BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780348|ref|YP_003064761.1|
5-amino-6-(5-phosphoribosylamino)uracil
reductase/diaminohydroxyphosphoribosylaminopyrimidine [Candidatus
Liberibacter asiaticus str. psy62]
         (364 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780348|ref|YP_003064761.1| 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidine
           [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040025|gb|ACT56821.1| 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidine
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 364

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/364 (100%), Positives = 364/364 (100%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL
Sbjct: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS
Sbjct: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK
Sbjct: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
           NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA
Sbjct: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
           LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH
Sbjct: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
           SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC
Sbjct: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360

Query: 361 LQEL 364
           LQEL
Sbjct: 361 LQEL 364


>gi|315122228|ref|YP_004062717.1| 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidine
           [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495630|gb|ADR52229.1| 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidine
           [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 367

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 268/363 (73%), Positives = 313/363 (86%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M +SS D RFMS ALRFS W  GLT TNPSVACLIVKDGI++GRGVTAYGG PHAE QAL
Sbjct: 1   MSLSSLDERFMSVALRFSCWGTGLTGTNPSVACLIVKDGIIVGRGVTAYGGRPHAETQAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           EEAGE ARGATAYVTLEPCSHYG++PPCA+FI+E GI RVVVCV DPDVRVSGRGLQWLS
Sbjct: 61  EEAGERARGATAYVTLEPCSHYGQAPPCAKFIVEAGISRVVVCVIDPDVRVSGRGLQWLS 120

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           QKGI+VD+++E EG+  L AYLTRQV+ RSH+ LK+A+SQDNMIG+ GCG+V ITG IS+
Sbjct: 121 QKGIVVDKVLEREGERVLGAYLTRQVKNRSHVILKLALSQDNMIGIVGCGNVSITGLISR 180

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            QVHLLRAQSDAILVGIGTV++D+PELTCRL+GL++ SP+RIILDPH K+SL S+I++TA
Sbjct: 181 KQVHLLRAQSDAILVGIGTVISDNPELTCRLDGLKDRSPIRIILDPHLKISLSSRIMQTA 240

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
            LAPVIIVTE +D  LAL+ +KKN++I++C+CRDLKKLL IL  RG+TSLLVEGGA VA 
Sbjct: 241 SLAPVIIVTEKNDCNLALSIKKKNVDIVHCNCRDLKKLLAILADRGITSLLVEGGARVAR 300

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
           SF+ S  VDSIILY+SQ +IG  GI SPLEE ++E NFMCVRRD FGSDVC EY+ KN C
Sbjct: 301 SFMMSGFVDSIILYKSQKIIGTSGIASPLEEEFIENNFMCVRRDGFGSDVCFEYVRKNFC 360

Query: 361 LQE 363
           LQE
Sbjct: 361 LQE 363


>gi|222085509|ref|YP_002544039.1| 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidine
           deaminase protein [Agrobacterium radiobacter K84]
 gi|221722957|gb|ACM26113.1| 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidine
           deaminase protein [Agrobacterium radiobacter K84]
          Length = 371

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/359 (53%), Positives = 248/359 (69%), Gaps = 11/359 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM+AA+R SRWH+GLTSTNPSV C+IVKDG VIGRGVTA GG PHAE QAL +AGE 
Sbjct: 9   DERFMAAAIRLSRWHLGLTSTNPSVGCVIVKDGAVIGRGVTAVGGRPHAETQALADAGEA 68

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSHYG++PPC++ +I  G+ RVV+ V DPD RVSGRG+  L   GI V
Sbjct: 69  ARGATAYVTLEPCSHYGKTPPCSEALIAYGVARVVISVTDPDQRVSGRGIAMLRDAGIEV 128

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  ++E EG+  L  YL RQ   R ++TLK+AVS D MIG  G G V ITG +++ QV +
Sbjct: 129 DIGILEEEGRHSLAGYLMRQTRNRPYVTLKLAVSTDGMIGKTGTGQVRITGDVARAQVQV 188

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +RA+SDAILVGIGT +ADDPELTCRL GL++ +P+RI++D   +L L SK++KTA   PV
Sbjct: 189 VRAESDAILVGIGTAIADDPELTCRLPGLEDRTPLRIVIDDQLQLPLGSKLVKTARQYPV 248

Query: 246 IIVT-------ENDDPVLA---LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
           I V        EN D  L     A     + ++  +  +  +LL  L  RG++SLLVEGG
Sbjct: 249 ITVAGHPPPFDENTDKALMARRAALDDAGVEVLQSNSNEPGELLEALGTRGISSLLVEGG 308

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           A VA  F+++ LVD I+L++    IGEGGI SP+ +  +  +F  +R   FG D C E+
Sbjct: 309 ARVAQRFLDADLVDRILLFQGPDAIGEGGIESPVTKTNIPPSFRHIRASQFGDDRCDEF 367


>gi|227821532|ref|YP_002825502.1| riboflavin biosynthesis protein RibD [Sinorhizobium fredii NGR234]
 gi|227340531|gb|ACP24749.1| riboflavin biosynthesis protein RibD [Sinorhizobium fredii NGR234]
          Length = 367

 Score =  346 bits (887), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 181/359 (50%), Positives = 237/359 (66%), Gaps = 3/359 (0%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM+AALR +R ++GLTSTNPSV C+IVKD  ++GR VTA GG PHAE QAL +AGE+
Sbjct: 8   DERFMAAALRLARRNLGLTSTNPSVGCVIVKDDTIVGRAVTAPGGRPHAETQALADAGEQ 67

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPC   +I  GI RVVVC+ DPD RV+GRG+  L   GI V
Sbjct: 68  ARGATAYVTLEPCSHHGRTPPCVDALIASGIARVVVCLLDPDERVAGRGVVMLRDAGIDV 127

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  ++  EG+  L AYL RQ  KR H+TLK+AVS D MIG  G G V ITG +S+ QV +
Sbjct: 128 DLGVLRDEGERVLEAYLMRQRMKRPHVTLKLAVSADGMIGRKGEGQVRITGAVSRAQVQV 187

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRA++DAILVG+GT  ADDPELT RL GL+  SP+RI+LD    L+++SK++++A     
Sbjct: 188 LRAETDAILVGVGTANADDPELTVRLPGLEARSPIRIVLDRRLDLAVESKLVRSARAVLS 247

Query: 246 IIVTEN--DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
             V ++  D P +      +   +   +   +  LL  L  RG++SLLVEGGA  A  F+
Sbjct: 248 FAVADSVLDAPAMTRRSTLEEAGVEVLNADTIYDLLIALASRGISSLLVEGGARAARQFL 307

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362
           ++ LVD I+LY     IGE GI SP +   +   F   R   +G+D+  +Y   + C Q
Sbjct: 308 DAGLVDRILLYTGPATIGEDGIRSPFDRMTVPAGFSLKRTARYGNDIFDDYERDSGCSQ 366


>gi|15964963|ref|NP_385316.1| riboflavin biosynthesis protein [Sinorhizobium meliloti 1021]
 gi|307301034|ref|ZP_07580803.1| riboflavin biosynthesis protein RibD [Sinorhizobium meliloti
           BL225C]
 gi|307317768|ref|ZP_07597206.1| riboflavin biosynthesis protein RibD [Sinorhizobium meliloti AK83]
 gi|15074142|emb|CAC45789.1| Probable riboflavin biosynthesis protein (deaminase/reductase)
           [Sinorhizobium meliloti 1021]
 gi|20385601|gb|AAM21351.1| riboflavin-specific deaminase/reductase [Sinorhizobium meliloti]
 gi|306896530|gb|EFN27278.1| riboflavin biosynthesis protein RibD [Sinorhizobium meliloti AK83]
 gi|306903989|gb|EFN34575.1| riboflavin biosynthesis protein RibD [Sinorhizobium meliloti
           BL225C]
          Length = 401

 Score =  342 bits (878), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 185/392 (47%), Positives = 240/392 (61%), Gaps = 46/392 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM+AALR +R ++GLTSTNPSV C+IV  G ++GR VTA GG PHAE QAL EAGE+
Sbjct: 8   DERFMAAALRLARRNLGLTSTNPSVGCIIVNKGTIVGRAVTAPGGRPHAETQALAEAGEK 67

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYV LEPCSH+G++PPCA  +I  G+ RVVV + DPD RV+GRG+  L   GI V
Sbjct: 68  ARGATAYVALEPCSHHGKTPPCADALIASGVGRVVVSILDPDERVAGRGVVMLRGAGIDV 127

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D   +  EG   L AYL RQ +KR H+TLK+AVS D MIG  G G V I+G +S+ QV +
Sbjct: 128 DIGTLHEEGGRVLEAYLMRQRKKRPHVTLKLAVSADGMIGRRGEGQVRISGAVSRAQVQV 187

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRA++DAILVGIGT +ADDPELT R+ GL+E SP+RI+LD    L L+SK+++TA   P+
Sbjct: 188 LRAETDAILVGIGTAIADDPELTVRMPGLEERSPVRIVLDRRLDLPLESKLVRTARDVPL 247

Query: 246 IIVT------------------------------ENDDPVLAL-------------AFRK 262
           I+VT                                 +PVL+              A   
Sbjct: 248 IVVTGDAGYPSSHEQGAGARRADEGQSSLPLSSGSTREPVLSPLAEAGTDYDARRGALEA 307

Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
               ++  D   +  LL  L  RG++SLLVEGGA  A SF+++ LVD I+L+     IGE
Sbjct: 308 AGAELLSADT--IPDLLAALASRGISSLLVEGGARAARSFLDADLVDRILLFTGPAAIGE 365

Query: 323 GGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           GGI SP +   + + F   R   +G D+  +Y
Sbjct: 366 GGISSPFQRTSVPEGFTLRRTARYGDDIFEDY 397


>gi|218463058|ref|ZP_03503149.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
           [Rhizobium etli Kim 5]
          Length = 412

 Score =  337 bits (863), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 186/408 (45%), Positives = 238/408 (58%), Gaps = 54/408 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M ++  D  FM+AA+R SR H+G T+TNPSV CLIVKDG+V+G+ VTA GG PHAE QAL
Sbjct: 1   MSITPHDESFMAAAIRLSRRHLGRTATNPSVGCLIVKDGVVVGQAVTALGGRPHAEPQAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAGE ARG T YVTLEPCSH+G++PPCA+ +I  G+ RVV+ V DPD RVSGRG+  L 
Sbjct: 61  AEAGEAARGGTVYVTLEPCSHHGKTPPCAEALIAYGVARVVISVTDPDPRVSGRGISMLR 120

Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI VD  ++E+EG+  L  YLTRQ + R ++TLK+AVS D MIG AG G V ITG  +
Sbjct: 121 DAGIEVDAGVLEAEGRRSLAGYLTRQTKSRPYVTLKLAVSADGMIGRAGEGQVAITGPEA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           + +V  LRA++D IL GIGT ++DDP LT R  GL+  SP+RI+LDP   L L SK++ T
Sbjct: 181 RAEVQALRAETDTILGGIGTAISDDPLLTVRTPGLEAQSPIRIVLDPSLALPLTSKLVAT 240

Query: 240 ALLAPVIIVTEND--------------------------DPVLALAFRKK---------- 263
           A   PVI+V                              DP      R +          
Sbjct: 241 ARDVPVILVASEQVWPLSADAEGLPPSVLADYRGRATGLDPSFEPPTRGEMTGRAEGGTA 300

Query: 264 -----------------NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
                             + I+YC+    + LL  L  RG++SLLVEGGA  A  F+ + 
Sbjct: 301 PADATDLDSRRAALEAAGVEIVYCNPYHPEILLPALATRGISSLLVEGGAKTARLFLEAG 360

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           LVD I LY++ +VIGEGGI SPL    +   F  +    FG D   EY
Sbjct: 361 LVDRIQLYQAPVVIGEGGIESPLARTDIPSGFAHMGTQIFGQDRLDEY 408


>gi|150396042|ref|YP_001326509.1| riboflavin biosynthesis protein RibD [Sinorhizobium medicae WSM419]
 gi|150027557|gb|ABR59674.1| riboflavin biosynthesis protein RibD [Sinorhizobium medicae WSM419]
          Length = 398

 Score =  335 bits (860), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 181/389 (46%), Positives = 246/389 (63%), Gaps = 43/389 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM+AALR SR ++G T TNPSV C+IV +G+++GR VTA GG PHAE QAL EAGE+
Sbjct: 8   DERFMAAALRLSRRNLGRTGTNPSVGCVIVNEGMIVGRAVTASGGRPHAETQALAEAGEK 67

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+G++PPC   +I  G+ RVVV + DPD RV+GRG+  L + GI V
Sbjct: 68  ARGATAYVTLEPCSHHGKTPPCTDALIASGVARVVVAILDPDERVAGRGIVLLREAGIAV 127

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  ++  EG+  L AYL RQ +KR H+TLK+AVS D MIG  G G V ITG +S+ QV +
Sbjct: 128 DIGVLREEGERALQAYLMRQCKKRPHVTLKLAVSNDGMIGRRGEGQVRITGAVSRAQVQI 187

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRA++DAILVGIGT  ADDPELT R+ GL++ SP+RI+LD   +L ++SK++++A    +
Sbjct: 188 LRAETDAILVGIGTASADDPELTVRMQGLEDRSPVRIVLDRRLELPIESKLVRSAGEVSL 247

Query: 246 IIVTEN----------------DD-----------PVLA-LAFR------------KKNI 265
           I+V  +                D+           P L+ +A R               +
Sbjct: 248 IVVAGDAGSPSPRMRVEGERRADEGQVSGVSLPLTPTLSPVAGRGGDYEARRDVLVSAGV 307

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
            I+  D  ++  LL  L  RG++SLLVEGG++ A +F++  LVD I+L+     IG+GGI
Sbjct: 308 EILNAD--NIPDLLAALASRGISSLLVEGGSSAARAFLDVELVDRILLFTGPSPIGKGGI 365

Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           PSP +   +   F   R   +G D+  EY
Sbjct: 366 PSPFQRRSVPAGFTLQRTARYGDDIFEEY 394


>gi|294852128|ref|ZP_06792801.1| riboflavin biosynthesis protein RibD [Brucella sp. NVSL 07-0026]
 gi|294820717|gb|EFG37716.1| riboflavin biosynthesis protein RibD [Brucella sp. NVSL 07-0026]
          Length = 373

 Score =  329 bits (843), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 169/356 (47%), Positives = 229/356 (64%), Gaps = 7/356 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM A +R++R H GLT TNPSV  +IVKDG+++GRGVTA GG PHAE QAL E GE 
Sbjct: 15  DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPC+H+GR+PPCA+ ++  G+ RVVV   DPD RVSG+G   L + GI +
Sbjct: 75  ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++  +    L  YL R   KR  + LK+A+S D MIG  G G V ITG +S+ Q H+
Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD   +L L S+++++A   P+
Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254

Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
            +    + P     A       I+  +  D    L +LL  L  +G+ S+LVEGGA VA 
Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314

Query: 301 SFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           SF++ +LVD +I++RS +VIG   G+     E Y+   F  +RR  +  D C EY+
Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETYIASEFKILRRMRYADDACAEYV 370


>gi|256369199|ref|YP_003106707.1| riboflavin biosynthesis protein RibD [Brucella microti CCM 4915]
 gi|255999359|gb|ACU47758.1| riboflavin biosynthesis protein RibD [Brucella microti CCM 4915]
          Length = 373

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 168/356 (47%), Positives = 229/356 (64%), Gaps = 7/356 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM A +R++R H GLT TNPSV  +IVKDG+++GRGVTA GG PHAE QAL E GE 
Sbjct: 15  DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPC+H+GR+PPCA+ ++  G+ RVVV   DPD RVSG+G   L + GI +
Sbjct: 75  ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++  +    L  YL R   KR  + LK+A+S D MIG  G G V ITG +S+ Q H+
Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD   +L L S+++++A   P+
Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254

Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
            +    + P     A       I+  +  D    L +LL  L  +G+ S+LVEGGA VA 
Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314

Query: 301 SFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           SF++ +LVD +I++RS +VIG   G+     E ++   F  +RR  +  D C EY+
Sbjct: 315 SFLDKKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYV 370


>gi|254701540|ref|ZP_05163368.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 5 str. 513]
 gi|261752090|ref|ZP_05995799.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 5 str. 513]
 gi|261741843|gb|EEY29769.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 5 str. 513]
          Length = 373

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 168/356 (47%), Positives = 229/356 (64%), Gaps = 7/356 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM A +R++R H GLT TNPSV  +IVKDG+++GRGVTA GG PHAE QAL E GE 
Sbjct: 15  DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPC+H+GR+PPCA+ ++  G+ RVVV   DPD RVSG+G   L + GI +
Sbjct: 75  ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++  +    L  YL R   KR  + LK+A+S D MIG  G G V ITG +S+ Q H+
Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD   +L L S+++++A   P+
Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254

Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
            +    + P     A       I+  +  D    L +LL  L  +G+ S+LVEGGA VA 
Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314

Query: 301 SFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           SF++ +LVD +I++RS +VIG   G+     E ++   F  +RR  +  D C EY+
Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYV 370


>gi|256060883|ref|ZP_05451043.1| riboflavin biosynthesis protein RibD [Brucella neotomae 5K33]
 gi|261324881|ref|ZP_05964078.1| riboflavin biosynthesis protein RibD [Brucella neotomae 5K33]
 gi|261300861|gb|EEY04358.1| riboflavin biosynthesis protein RibD [Brucella neotomae 5K33]
          Length = 373

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 168/356 (47%), Positives = 229/356 (64%), Gaps = 7/356 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM A +R++R H GLT TNPSV  +IVKDG+++GRGVTA GG PHAE QAL E GE 
Sbjct: 15  DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPC+H+GR+PPCA+ ++  G+ RVVV   DPD RVSG+G   L + GI +
Sbjct: 75  ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++  +    L  YL R   KR  + LK+A+S D MIG  G G V ITG +S+ Q H+
Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD   +L L S+++++A   P+
Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254

Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
            +    + P     A       I+  +  D    L +LL  L  +G+ S+LVEGGA VA 
Sbjct: 255 WVACGEEAPDERRAAMGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314

Query: 301 SFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           SF++ +LVD +I++RS +VIG   G+     E ++   F  +RR  +  D C EY+
Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYV 370


>gi|23501654|ref|NP_697781.1| riboflavin biosynthesis protein RibD [Brucella suis 1330]
 gi|62289719|ref|YP_221512.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 1 str.
           9-941]
 gi|82699648|ref|YP_414222.1| cytidine/deoxycytidylate deaminase zinc-binding subunit [Brucella
           melitensis biovar Abortus 2308]
 gi|148559719|ref|YP_001258746.1| riboflavin biosynthesis protein RibD [Brucella ovis ATCC 25840]
 gi|161618734|ref|YP_001592621.1| riboflavin biosynthesis protein RibD [Brucella canis ATCC 23365]
 gi|163843038|ref|YP_001627442.1| riboflavin biosynthesis protein RibD [Brucella suis ATCC 23445]
 gi|189023968|ref|YP_001934736.1| riboflavin biosynthesis protein RibD [Brucella abortus S19]
 gi|225627265|ref|ZP_03785302.1| riboflavin biosynthesis protein RibD [Brucella ceti str. Cudo]
 gi|225852283|ref|YP_002732516.1| riboflavin biosynthesis protein RibD [Brucella melitensis ATCC
           23457]
 gi|237815207|ref|ZP_04594205.1| riboflavin biosynthesis protein RibD [Brucella abortus str. 2308 A]
 gi|254689028|ref|ZP_05152282.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 6 str.
           870]
 gi|254693511|ref|ZP_05155339.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697163|ref|ZP_05158991.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254704089|ref|ZP_05165917.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 3 str. 686]
 gi|254707010|ref|ZP_05168838.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis
           M163/99/10]
 gi|254709881|ref|ZP_05171692.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis B2/94]
 gi|254713882|ref|ZP_05175693.1| riboflavin biosynthesis protein RibD [Brucella ceti M644/93/1]
 gi|254717061|ref|ZP_05178872.1| riboflavin biosynthesis protein RibD [Brucella ceti M13/05/1]
 gi|254730059|ref|ZP_05188637.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 4 str.
           292]
 gi|256031374|ref|ZP_05444988.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis
           M292/94/1]
 gi|256257278|ref|ZP_05462814.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 9 str.
           C68]
 gi|256264212|ref|ZP_05466744.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 2
           str. 63/9]
 gi|260168507|ref|ZP_05755318.1| riboflavin biosynthesis protein RibD [Brucella sp. F5/99]
 gi|260545528|ref|ZP_05821269.1| riboflavin biosynthesis protein RibD [Brucella abortus NCTC 8038]
 gi|260566663|ref|ZP_05837133.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 4 str. 40]
 gi|260754523|ref|ZP_05866871.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 6 str.
           870]
 gi|260757744|ref|ZP_05870092.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 4 str.
           292]
 gi|260761569|ref|ZP_05873912.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260883551|ref|ZP_05895165.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 9 str.
           C68]
 gi|261213771|ref|ZP_05928052.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 3 str.
           Tulya]
 gi|261218871|ref|ZP_05933152.1| riboflavin biosynthesis protein RibD [Brucella ceti M13/05/1]
 gi|261314477|ref|ZP_05953674.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis
           M163/99/10]
 gi|261317423|ref|ZP_05956620.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis B2/94]
 gi|261321630|ref|ZP_05960827.1| riboflavin biosynthesis protein RibD [Brucella ceti M644/93/1]
 gi|261754749|ref|ZP_05998458.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 3 str. 686]
 gi|261757977|ref|ZP_06001686.1| riboflavin biosynthesis protein RibD [Brucella sp. F5/99]
 gi|265988460|ref|ZP_06101017.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis
           M292/94/1]
 gi|297248124|ref|ZP_06931842.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 5 str.
           B3196]
 gi|23347574|gb|AAN29696.1| riboflavin biosynthesis protein RibD [Brucella suis 1330]
 gi|62195851|gb|AAX74151.1| RibD, riboflavin biosynthesis protein RibD [Brucella abortus bv. 1
           str. 9-941]
 gi|82615749|emb|CAJ10745.1| Cytidine/deoxycytidylate deaminase, zinc-binding region:Bacterial
           bifunctional deaminase-reductase, C-terminal:Riboflavin
           bio [Brucella melitensis biovar Abortus 2308]
 gi|148370976|gb|ABQ60955.1| riboflavin biosynthesis protein RibD [Brucella ovis ATCC 25840]
 gi|161335545|gb|ABX61850.1| riboflavin biosynthesis protein RibD [Brucella canis ATCC 23365]
 gi|163673761|gb|ABY37872.1| riboflavin biosynthesis protein RibD [Brucella suis ATCC 23445]
 gi|189019540|gb|ACD72262.1| riboflavin biosynthesis protein RibD [Brucella abortus S19]
 gi|225617270|gb|EEH14315.1| riboflavin biosynthesis protein RibD [Brucella ceti str. Cudo]
 gi|225640648|gb|ACO00562.1| riboflavin biosynthesis protein RibD [Brucella melitensis ATCC
           23457]
 gi|237790044|gb|EEP64254.1| riboflavin biosynthesis protein RibD [Brucella abortus str. 2308 A]
 gi|260096935|gb|EEW80810.1| riboflavin biosynthesis protein RibD [Brucella abortus NCTC 8038]
 gi|260156181|gb|EEW91261.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 4 str. 40]
 gi|260668062|gb|EEX55002.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 4 str.
           292]
 gi|260672001|gb|EEX58822.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260674631|gb|EEX61452.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 6 str.
           870]
 gi|260873079|gb|EEX80148.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 9 str.
           C68]
 gi|260915378|gb|EEX82239.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 3 str.
           Tulya]
 gi|260923960|gb|EEX90528.1| riboflavin biosynthesis protein RibD [Brucella ceti M13/05/1]
 gi|261294320|gb|EEX97816.1| riboflavin biosynthesis protein RibD [Brucella ceti M644/93/1]
 gi|261296646|gb|EEY00143.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis B2/94]
 gi|261303503|gb|EEY07000.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis
           M163/99/10]
 gi|261737961|gb|EEY25957.1| riboflavin biosynthesis protein RibD [Brucella sp. F5/99]
 gi|261744502|gb|EEY32428.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 3 str. 686]
 gi|263094456|gb|EEZ18278.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 2
           str. 63/9]
 gi|264660657|gb|EEZ30918.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis
           M292/94/1]
 gi|297175293|gb|EFH34640.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 5 str.
           B3196]
 gi|326408787|gb|ADZ65852.1| riboflavin biosynthesis protein RibD [Brucella melitensis M28]
          Length = 373

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 168/356 (47%), Positives = 229/356 (64%), Gaps = 7/356 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM A +R++R H GLT TNPSV  +IVKDG+++GRGVTA GG PHAE QAL E GE 
Sbjct: 15  DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPC+H+GR+PPCA+ ++  G+ RVVV   DPD RVSG+G   L + GI +
Sbjct: 75  ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++  +    L  YL R   KR  + LK+A+S D MIG  G G V ITG +S+ Q H+
Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD   +L L S+++++A   P+
Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254

Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
            +    + P     A       I+  +  D    L +LL  L  +G+ S+LVEGGA VA 
Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314

Query: 301 SFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           SF++ +LVD +I++RS +VIG   G+     E ++   F  +RR  +  D C EY+
Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYV 370


>gi|17987472|ref|NP_540106.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Brucella melitensis bv. 1 str. 16M]
 gi|256044453|ref|ZP_05447357.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|260563804|ref|ZP_05834290.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 1
           str. 16M]
 gi|265990874|ref|ZP_06103431.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 1
           str. Rev.1]
 gi|17983168|gb|AAL52370.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Brucella melitensis bv. 1 str. 16M]
 gi|260153820|gb|EEW88912.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 1
           str. 16M]
 gi|263001658|gb|EEZ14233.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 1
           str. Rev.1]
          Length = 373

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 168/356 (47%), Positives = 229/356 (64%), Gaps = 7/356 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM A +R++R H GLT TNPSV  +IVKDG+++GRGVTA GG PHAE QAL E GE 
Sbjct: 15  DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPC+H+GR+PPCA+ ++  G+ RVVV   DPD RVSG+G   L + GI +
Sbjct: 75  ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++  +    L  YL R   KR  + LK+A+S D MIG  G G V ITG +S+ Q H+
Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD   +L L S+++++A   P+
Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254

Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
            +    + P     A       I+  +  D    L +LL  L  +G+ S+LVEGGA VA 
Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314

Query: 301 SFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           SF++ +LVD +I++RS +VIG   G+     E ++   F  +RR  +  D C EY+
Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETHITSEFKILRRMRYADDACAEYV 370


>gi|326538505|gb|ADZ86720.1| riboflavin biosynthesis protein RibD [Brucella melitensis M5-90]
          Length = 373

 Score =  325 bits (834), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 167/354 (47%), Positives = 228/354 (64%), Gaps = 7/354 (1%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           RFM A +R++R H GLT TNPSV  +IVKDG+++GRGVTA GG PHAE QAL E GE AR
Sbjct: 17  RFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEAAR 76

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GATAYVTLEPC+H+GR+PPCA+ ++  G+ RVVV   DPD RVSG+G   L + GI +V 
Sbjct: 77  GATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEVVP 136

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++  +    L  YL R   KR  + LK+A+S D MIG  G G V ITG +S+ Q H+LR
Sbjct: 137 GILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHILR 196

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           AQ+D IL+GI T LADDP L CRL GL++ SP+R++LD   +L L S+++++A   P+ +
Sbjct: 197 AQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPLWV 256

Query: 248 VTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSF 302
               + P     A       I+  +  D    L +LL  L  +G+ S+LVEGGA VA SF
Sbjct: 257 ACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAKSF 316

Query: 303 INSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           ++ +LVD +I++RS +VIG   G+     E ++   F  +RR  +  D C EY+
Sbjct: 317 LDEKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYV 370


>gi|209548782|ref|YP_002280699.1| riboflavin biosynthesis protein RibD [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534538|gb|ACI54473.1| riboflavin biosynthesis protein RibD [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 404

 Score =  325 bits (832), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 188/400 (47%), Positives = 243/400 (60%), Gaps = 46/400 (11%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M V+  D  FM+AA+R SR H+G T+TNPSV CLIV+DG+V+G+ VTA GG PHAE QAL
Sbjct: 1   MSVTPHDESFMAAAIRLSRRHLGRTATNPSVGCLIVRDGVVVGQAVTAVGGRPHAEPQAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAG  ARGATAYVTLEPCSH+G++PPCA+ +I  G+ RVV+ V DPD RVSGRG+  L 
Sbjct: 61  AEAGAAARGATAYVTLEPCSHHGKTPPCAEALIAYGVARVVISVTDPDPRVSGRGIAMLR 120

Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI VD  ++E++G+  L  YLTRQ + R ++TLK+AVS D MIG  G G V ITG  +
Sbjct: 121 EAGIEVDAGVLEADGRRSLAGYLTRQTKNRPYVTLKLAVSADGMIGREGAGQVAITGPEA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           + +V  LRA++DAILVGIGT ++DDP LT R  GL+  SP+RI+LDP   L L SK+++T
Sbjct: 181 RAEVQALRAETDAILVGIGTAISDDPLLTVRTPGLEAQSPIRIVLDPSLALPLTSKLVQT 240

Query: 240 ALLAPVIIVTE-------------------NDDPVLAL---------------------- 258
           A   PVI+V                     N  P+  L                      
Sbjct: 241 ARDVPVIVVASEEISPSGSEEGLSPSALGANPQPISPLVGEMSGRTEGGATLPAAAMDLD 300

Query: 259 ----AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
               A     + I+YC+    + LL  L  RG++SLLVEGGA  A  F+ + LVD I LY
Sbjct: 301 SRRTALEAAGVEIVYCNPYHPEILLPALATRGISSLLVEGGAKTARLFLEAGLVDRIQLY 360

Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           ++ +VIGEGGI SPL+   +   F       FG D   EY
Sbjct: 361 QAPVVIGEGGIESPLDATDIPPGFAQTGTQMFGEDRLDEY 400


>gi|256113297|ref|ZP_05454165.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 3
           str. Ether]
 gi|265994710|ref|ZP_06107267.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 3
           str. Ether]
 gi|262765823|gb|EEZ11612.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 3
           str. Ether]
          Length = 373

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 167/356 (46%), Positives = 228/356 (64%), Gaps = 7/356 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM A +R++R H GLT TNPSV  +IVKDG+++GRGVTA GG PHAE QAL E GE 
Sbjct: 15  DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPC+H+GR+PPCA+ ++  G+ RVVV   DPD RVSG+G   L + GI +
Sbjct: 75  ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++  +    L  YL R   KR  + LK+A+S D MIG  G G V ITG +S+ Q H+
Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD   +L L S+++++A   P+
Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLKQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254

Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
            +    + P     A       I+  +  D    L +LL  L  +G+ S+LVEGGA VA 
Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314

Query: 301 SFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           SF++ +LVD +I++ S +VIG   G+     E ++   F  +RR  +  D C EY+
Sbjct: 315 SFLDEKLVDRLIIFLSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYV 370


>gi|256159495|ref|ZP_05457263.1| riboflavin biosynthesis protein RibD [Brucella ceti M490/95/1]
 gi|256254781|ref|ZP_05460317.1| riboflavin biosynthesis protein RibD [Brucella ceti B1/94]
 gi|261221961|ref|ZP_05936242.1| riboflavin biosynthesis protein RibD [Brucella ceti B1/94]
 gi|265997924|ref|ZP_06110481.1| riboflavin biosynthesis protein RibD [Brucella ceti M490/95/1]
 gi|260920545|gb|EEX87198.1| riboflavin biosynthesis protein RibD [Brucella ceti B1/94]
 gi|262552392|gb|EEZ08382.1| riboflavin biosynthesis protein RibD [Brucella ceti M490/95/1]
          Length = 373

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 167/356 (46%), Positives = 228/356 (64%), Gaps = 7/356 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM A +R++R H GLT TNPSV  +IVKDG+++GRGVTA GG PHAE QAL E GE 
Sbjct: 15  DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPC+H+GR+PPCA+ ++  G+ RVVV   DPD RVS +G   L + GI +
Sbjct: 75  ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSRKGFAILREAGIEV 134

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++  +    L  YL R   KR  + LK+A+S D MIG  G G V ITG +S+ Q H+
Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD   +L L S+++++A   P+
Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254

Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
            +    + P     A       I+  +  D    L +LL  L  +G+ S+LVEGGA VA 
Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314

Query: 301 SFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           SF++ +LVD +I++RS +VIG   G+     E ++   F  +RR  +  D C EY+
Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYV 370


>gi|110633489|ref|YP_673697.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Mesorhizobium sp. BNC1]
 gi|110284473|gb|ABG62532.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chelativorans
           sp. BNC1]
          Length = 370

 Score =  319 bits (818), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 172/364 (47%), Positives = 232/364 (63%), Gaps = 10/364 (2%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEV 57
           P+S+ D RFM+AA+R SR H+GLT  NPSV CLIV+D      ++GR VTA GG PHAE 
Sbjct: 5   PISAHDRRFMAAAVRLSRRHLGLTGANPSVGCLIVRDDGEGPYIVGRAVTAIGGRPHAES 64

Query: 58  QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           QALEEAGE ARGATAYVTLEPC+H+GR+PPC+  +I  G+ RVV    DPD+RVSG+G  
Sbjct: 65  QALEEAGELARGATAYVTLEPCAHHGRTPPCSLALIAAGVARVVGAASDPDLRVSGKGYS 124

Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
            L   GI +V+ ++ +E    L  YLTR  +KR  +TLK+A+S D  IG  G G V IT 
Sbjct: 125 MLRAAGIEVVEGLLAAEAADLLAGYLTRSTKKRPEVTLKVALSADMKIGREGQGQVRITE 184

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
            I++ QVH++RA++DAIL+G GT LADDP LT RL GL+  SP RI+LD H +L  DS +
Sbjct: 185 AIARRQVHMMRAEADAILIGNGTALADDPLLTSRLPGLEARSPARIVLDRHLRLPPDSVL 244

Query: 237 IKTALLAPVIIVTEND-DPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLL 291
           + TA   P+++    D D     A     + +I  +  D    L + L  L  RG+++L+
Sbjct: 245 VSTAREVPLLVTAAQDVDSERRAALAAAGVELIGVEAFDGHIALPEFLEDLAARGISTLM 304

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           VEGGA  A  F++  LVD + L+  +  IG+ GI SP++  ++   F   R   FG D+ 
Sbjct: 305 VEGGAFTAREFLSEDLVDRLCLFVGRGKIGDEGIASPVDLDHIPSGFAKRREARFGEDLY 364

Query: 352 LEYI 355
            EY+
Sbjct: 365 FEYV 368


>gi|163759204|ref|ZP_02166290.1| riboflavin-specific deaminase / reductase [Hoeflea phototrophica
           DFL-43]
 gi|162283608|gb|EDQ33893.1| riboflavin-specific deaminase / reductase [Hoeflea phototrophica
           DFL-43]
          Length = 379

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 171/363 (47%), Positives = 228/363 (62%), Gaps = 12/363 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPHAEVQ 58
           V + D RFM+AA+R +RWH G T +NPSVA LIV++     +++GRGVTA GG PHAE Q
Sbjct: 15  VDALDRRFMAAAIRLARWHQGRTGSNPSVATLIVREINDEPVIVGRGVTAVGGRPHAEPQ 74

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           AL EAG+ ARGATAYVTLEPC+H+GR+PPCA+ ++  G+ RVV    DPD RVSGRG Q 
Sbjct: 75  ALAEAGDLARGATAYVTLEPCAHHGRTPPCAEALVSAGVSRVVAAASDPDDRVSGRGYQI 134

Query: 119 LSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L    I V+  ++  E    L  YLTR+++ R H+TLK+A+S++  IG    G V ITG 
Sbjct: 135 LRDARIEVEENVLAEEAARDLAGYLTRRMKNRVHVTLKLALSRNGKIGRRDGGQVLITGE 194

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
           +S  QVH LRAQ+D IL+GIGT L DDP LTCR+ GL++ SP+R++LD   KL + SK++
Sbjct: 195 VSNRQVHALRAQADVILIGIGTALNDDPSLTCRIEGLEDRSPIRLVLDTQLKLPVASKLV 254

Query: 238 KTALLAPVIIVTE--NDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLL 291
           +TA   P+ I T    D P  A        + I C+  D    L +LL  L  RG++S+L
Sbjct: 255 RTAREVPLWIATSAAQDHPARAGLA-AAGADFIACETHDGQIALPELLEDLAARGLSSVL 313

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           VEGG  VA +F+   LVD +IL   QI I    + +P   G +   F       FG+D  
Sbjct: 314 VEGGEQVAEAFLAEGLVDRLILLTGQIDIEGDAVDAPFAPGIVPPGFRKTSSMTFGADHM 373

Query: 352 LEY 354
            E+
Sbjct: 374 DEF 376


>gi|13476938|ref|NP_108508.1| riboflavin-specific deaminase / reductase [Mesorhizobium loti
           MAFF303099]
 gi|14027701|dbj|BAB54294.1| riboflavin-specific deaminase / reductase [Mesorhizobium loti
           MAFF303099]
          Length = 376

 Score =  315 bits (806), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 168/362 (46%), Positives = 226/362 (62%), Gaps = 10/362 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQA 59
           ++ D RFM+AALR SR + G TSTNPSV  +IV+D     +++G GVTA GG PHAE +A
Sbjct: 12  TALDRRFMAAALRLSRRNAGRTSTNPSVGTIIVRDDGAGPMIVGTGVTAVGGRPHAETEA 71

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           L EAGE ARGATAYVTLEPC+H+GR+PPCA  ++  GI RVV    DPD RVSG+G   L
Sbjct: 72  LAEAGELARGATAYVTLEPCAHHGRTPPCANALVNAGIARVVGAASDPDPRVSGKGYAIL 131

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +V++++ +E    +  YL R + KR  +TLK+A+S D  IG  G G V ITG I
Sbjct: 132 RAAGIVVVEKVLATEAAEQMAGYLIRSLRKRPEVTLKLALSSDGKIGRKGAGQVAITGEI 191

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++  V+L+RA+SDAIL+GIGT L DDP LT RL GL+  SP RIILD   +L   SK++ 
Sbjct: 192 ARRDVYLMRAESDAILIGIGTALEDDPALTVRLPGLENRSPARIILDRQIRLPEASKLVS 251

Query: 239 TALLAPVIIVT-ENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVE 293
                P+ +      DP    A  +  +  I  +  D    L +LL  L   G+ S+LVE
Sbjct: 252 GVDRVPLYVAACLEADPHRRSALERAGVRFIGTETHDGVVALPELLEDLAALGMASVLVE 311

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           GGA VA +F++  LVD I+L++    IGE GI SP++  ++   F  +R   FG D   E
Sbjct: 312 GGAQVAKAFLDEDLVDRIVLFQGPEAIGEDGIASPVDADHIPAGFRKLREMRFGEDSYAE 371

Query: 354 YI 355
           ++
Sbjct: 372 WV 373


>gi|114704832|ref|ZP_01437740.1| riboflavin-specific deaminase / reductase [Fulvimarina pelagi
           HTCC2506]
 gi|114539617|gb|EAU42737.1| riboflavin-specific deaminase / reductase [Fulvimarina pelagi
           HTCC2506]
          Length = 381

 Score =  313 bits (802), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 168/364 (46%), Positives = 223/364 (61%), Gaps = 12/364 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQ 58
           +S+ + RFM+AA+RF   H GLT TNPSVA LIV+D      ++GRG+TA GG PHAE Q
Sbjct: 14  LSAANERFMAAAIRFGFRHAGLTGTNPSVATLIVRDDGAGPRIVGRGITARGGRPHAEAQ 73

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           AL EAG  ARGA AYVTLEPC+H+GR+PPCA+ ++  G+ RVV    DPD RV G+G   
Sbjct: 74  ALGEAGTLARGAVAYVTLEPCAHHGRTPPCAEALVASGVSRVVSAAADPDPRVDGKGHAI 133

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L + G+ +  R+M  E    L AYLTR    R  ITLK+AVS D MIG  G G V ITG 
Sbjct: 134 LEKGGLSVTPRVMAKEAASDLSAYLTRHARNRPQITLKMAVSPDGMIGRKGHGQVFITGP 193

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
           I+  Q HL+RA+ DAILVG+GTV  DDP L CRL GL+  SP RI+LDP   +  ++ ++
Sbjct: 194 IANRQTHLVRARHDAILVGMGTVREDDPGLDCRLPGLENRSPRRIVLDPDLTIEPETGLV 253

Query: 238 KTALLAPVIIVTEND-DPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSL 290
           ++A   P+ IV   D D     +      + + CD         L +L+  L   G+ ++
Sbjct: 254 RSARQTPLTIVARGDTDADKRQSLMAAGADFVACDVVPGTGRVALPELMEDLGATGIQNI 313

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
           LVEGGA V  SF+ + LVD +IL   + ++GEGGI SP++    ++ F    R  FG D 
Sbjct: 314 LVEGGATVGESFLEADLVDRLILVEGETMVGEGGIVSPIDVASGKQRFKLTERLRFGPDQ 373

Query: 351 CLEY 354
             E+
Sbjct: 374 WFEF 377


>gi|260466843|ref|ZP_05813027.1| riboflavin biosynthesis protein RibD [Mesorhizobium opportunistum
           WSM2075]
 gi|259029345|gb|EEW30637.1| riboflavin biosynthesis protein RibD [Mesorhizobium opportunistum
           WSM2075]
          Length = 376

 Score =  310 bits (793), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 165/362 (45%), Positives = 227/362 (62%), Gaps = 10/362 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQA 59
           ++ D RFM+AALR SR + G TSTNPSV  LIV+D     +++G GVTA GG PHAE +A
Sbjct: 12  AALDHRFMAAALRLSRRNAGRTSTNPSVGTLIVRDDGAGPMIVGTGVTAVGGRPHAETEA 71

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           L EAGE ARGATAYVTLEPC+H+GR+PPCA  ++  G+ RVV    DPD RVSG+G   L
Sbjct: 72  LAEAGELARGATAYVTLEPCAHHGRTPPCANALVNAGVARVVGASSDPDPRVSGKGYAIL 131

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +V++++ ++    +  YL R ++KR  + LK+A+S D  IG  G G V ITG +
Sbjct: 132 RAAGIEVVEKVLAAQAAEQMAGYLIRSLKKRPEVILKLALSSDGKIGREGAGQVAITGDM 191

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++ +V+L+RA++DAILVGIGT L DDP LT RL GL+  SP RI+LD   +L   SK++ 
Sbjct: 192 ARREVYLMRAEADAILVGIGTALEDDPALTVRLPGLENRSPARIVLDRQIRLPEASKLVS 251

Query: 239 TALLAPVIIVT-ENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVE 293
                P+ +      DP    A  +  +  I  +  +    L +LL  L   G+ S+LVE
Sbjct: 252 GVDRVPLYVAACLQADPQRRAALERAGVRFIGTETHEGGVALPELLEDLAALGMASVLVE 311

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           GGA VA +F+   LVD I+L++    IGEGGI SP++  ++   F  +R   FG D   E
Sbjct: 312 GGARVASAFLADGLVDRIVLFQGPEAIGEGGIASPIDGDHIPAGFRKLREMRFGEDGYAE 371

Query: 354 YI 355
           +I
Sbjct: 372 WI 373


>gi|306841987|ref|ZP_07474661.1| riboflavin biosynthesis protein RibD [Brucella sp. BO2]
 gi|306843711|ref|ZP_07476311.1| riboflavin biosynthesis protein RibD [Brucella sp. BO1]
 gi|306276021|gb|EFM57730.1| riboflavin biosynthesis protein RibD [Brucella sp. BO1]
 gi|306287915|gb|EFM59332.1| riboflavin biosynthesis protein RibD [Brucella sp. BO2]
          Length = 373

 Score =  308 bits (790), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 170/357 (47%), Positives = 232/357 (64%), Gaps = 9/357 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM A +R++R H GLT TNPSV  +IVKDG+++GRGVTA GG PHAE QAL EAGE 
Sbjct: 15  DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEAGEA 74

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPC+H+GR+PPCAQ ++  G+ RVVV   DPD RVSG+G   L + GI +
Sbjct: 75  ARGATAYVTLEPCAHHGRTPPCAQALVRAGVTRVVVAATDPDERVSGKGFAILREAGIEV 134

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++  +    L  YL R  +KR  + LK+A+S D MIG  G G V ITG +S+ Q H+
Sbjct: 135 VPGILPEQAADDLAGYLNRSAKKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ+D IL+GI T LADDP L CRL GL+  SP+R++LD   +L L S+++++A   P+
Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLESRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254

Query: 246 IIV--TENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVA 299
            +    E  D   A A    +  I+  +  D    L +LL  L  +G+ S+LVEGGA VA
Sbjct: 255 WVACREEASDERRA-ALGAASCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVA 313

Query: 300 HSFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
            SF++ +LVD ++++RS +VIG   G+     E ++   F  +R+  +  D C EY+
Sbjct: 314 KSFLDEKLVDRLVIFRSPLVIGAADGVAVEELETHIASEFKILRQVRYADDACAEYV 370


>gi|222148205|ref|YP_002549162.1| bifunctional riboflavin deaminase-reductase [Agrobacterium vitis
           S4]
 gi|221735193|gb|ACM36156.1| bifunctional riboflavin deaminase-reductase [Agrobacterium vitis
           S4]
          Length = 366

 Score =  308 bits (789), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 182/358 (50%), Positives = 238/358 (66%), Gaps = 13/358 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM+AA+R  R H+G T TNPSV C+IV DG ++G  VTA GG PHAE QA+  AGE+
Sbjct: 8   DQRFMAAAIRLGRSHLGQTLTNPSVGCVIVADGTIVGSAVTAIGGRPHAERQAIAVAGEK 67

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSH+G++PPCA  ++E G+ RVVV V DPD RVSGRGL  L+  GI +
Sbjct: 68  ARGATAYVTLEPCSHHGKTPPCADALVEAGVARVVVAVTDPDPRVSGRGLSILTDAGIEV 127

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++E E +  L AYLTRQ ++R H+TLK+A+S+D MIG AG G V ITG +++ QV L
Sbjct: 128 VTGVLEREARYGLAAYLTRQTKQRPHVTLKLALSRDGMIGRAGEGQVAITGPLARTQVQL 187

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRA+SDAILVGIGT  ADDP+LT RL G    SP+RI+LD   +L + SK+++TA   P 
Sbjct: 188 LRAESDAILVGIGTAKADDPDLTVRLAGQTHLSPLRIVLDRRLELPIGSKLVQTAGHVPT 247

Query: 246 IIV---------TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
           +           TE+ +     A +   +++      DL  LL  L  +G++SLLVEGGA
Sbjct: 248 VCACGEPSTFTCTESFE-ASRTALQAAGVDV--WPVADLDDLLRQLAVQGMSSLLVEGGA 304

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           A A +F+N+ LVD I LY+    IG  G+ SPL    + +NF  +R   FG+D   EY
Sbjct: 305 AAAKAFLNAGLVDRIHLYQGPDEIGGSGLASPLTPANIPENFRHLRSVNFGADRFDEY 362


>gi|153009855|ref|YP_001371070.1| riboflavin biosynthesis protein RibD [Ochrobactrum anthropi ATCC
           49188]
 gi|151561743|gb|ABS15241.1| riboflavin biosynthesis protein RibD [Ochrobactrum anthropi ATCC
           49188]
          Length = 373

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 171/367 (46%), Positives = 236/367 (64%), Gaps = 15/367 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            ++ D RFM A +R++R H GLT TNPSV  +IVKDG+++GRGVTA GG PHAE QAL +
Sbjct: 11  ATADDVRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTAIGGRPHAEPQALAD 70

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPC+H+GR+PPCA+ ++  G+ RVVV   DPD RVSGRG   L + 
Sbjct: 71  AGEVARGATAYVTLEPCAHHGRTPPCAEALVRAGVARVVVAATDPDERVSGRGFAILREA 130

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +V  ++  +    L  YL R  +KR  + LK+A+S D MIG  G G + ITG +++ 
Sbjct: 131 GIEVVPGILAEQAADDLAGYLNRSAKKRPEVILKLALSADGMIGRRGEGQLAITGPVARA 190

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           Q H+LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD   +L L SK+++TA 
Sbjct: 191 QSHILRAQTDIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDSGLRLPLSSKLVQTAD 250

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC--------DCR-DLKKLLTILVGRGVTSLLV 292
             P+ I    +    AL  R+  +    C        DCR  L +L+  L  +G++S+LV
Sbjct: 251 AQPLWIACGEE----ALPERRYELQAAGCRILATEAYDCRIALPELMDDLAAQGISSVLV 306

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           EGGA VA SF++  LVD + ++RS + IG E G+     E ++   F  +R+  +G D  
Sbjct: 307 EGGAGVAKSFLDEGLVDRLAIFRSPVEIGSELGVAVDGLETHIADKFKILRQARYGDDAY 366

Query: 352 LEYIGKN 358
            EY+ K 
Sbjct: 367 TEYVRKT 373


>gi|325292542|ref|YP_004278406.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-5-phosphoribosylamino uracil reductase
           [Agrobacterium sp. H13-3]
 gi|325060395|gb|ADY64086.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-5-phosphoribosylamino uracil reductase
           [Agrobacterium sp. H13-3]
          Length = 413

 Score =  306 bits (785), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 180/403 (44%), Positives = 240/403 (59%), Gaps = 55/403 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D +FM+ A+  S  H G T TNPSV C++VKD  +I   VTA GG PHAE QALE AGE 
Sbjct: 7   DEKFMARAIEVSLRHQGQTETNPSVGCVLVKDRKIIAEAVTAIGGRPHAERQALEIAGEA 66

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+G++PPCA  ++E G+ RVVV VDDPD RVSGRG   L + GI+V
Sbjct: 67  ARGATAYVTLEPCSHWGKTPPCANALVEYGVARVVVAVDDPDERVSGRGYSILREAGIVV 126

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  ++  +GK  L  YLTRQV+KR H+ LK+A+S D MIG  G G V ITG  +++ VH 
Sbjct: 127 ETGLLREQGKRALAGYLTRQVKKRPHVILKLAISSDGMIGRQGEGQVAITGPQARHAVHE 186

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRA+ D ILVGI T +ADDPELT R+ GL++ SP+RI+LD  F+L L SK++KTA   PV
Sbjct: 187 LRARCDCILVGIRTAIADDPELTVRIAGLEDRSPVRIVLDRKFELPLTSKLVKTARDLPV 246

Query: 246 IIVT--------------ENDDP----------------------VLALAFRKKNI---- 265
           ++                E D P                       L+++ R+  +    
Sbjct: 247 VVAALPPSALPGISPSRGEIDSPRPTRSDLVSVTHSPTFGVGKNAALSISPREGEVPGRA 306

Query: 266 --------------NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311
                          +   +   L+ LL IL  RG++ LLVEGGA  A SF+ + LVD I
Sbjct: 307 EGGSHDRRQPLIDAGVEILEAPTLENLLHILAERGMSELLVEGGAFAAKSFLEADLVDRI 366

Query: 312 ILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           +L+ S +V+GEGGI +PL    +  +++ V    +G D C +Y
Sbjct: 367 MLFESPVVVGEGGIETPLSRADIPGDYVLVSETAYGPDRCFDY 409


>gi|239831592|ref|ZP_04679921.1| riboflavin biosynthesis protein RibD [Ochrobactrum intermedium LMG
           3301]
 gi|239823859|gb|EEQ95427.1| riboflavin biosynthesis protein RibD [Ochrobactrum intermedium LMG
           3301]
          Length = 375

 Score =  306 bits (784), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 170/362 (46%), Positives = 231/362 (63%), Gaps = 7/362 (1%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           V+S D RFM A +R++R H GLT TNPSV  +IVKDG+++GRGVTA GG PHAE QAL E
Sbjct: 13  VTSDDVRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAE 72

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ ARGATAYVTLEPC+H+GR+PPCA+ ++  G+ RVV    DPD RVSG+G   L + 
Sbjct: 73  AGDAARGATAYVTLEPCAHHGRTPPCAETLVRAGVARVVAAATDPDERVSGKGFAILREA 132

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +V  ++  +    L  YL R  +KR  + LK+A+S D MIG  G G V ITG I++ 
Sbjct: 133 GIEVVPGILADQAADDLAGYLNRSAKKRPEVILKLALSADGMIGRRGEGQVAITGPIARA 192

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           Q H+LRAQ+D IL+GI T LADDP L CRL GL + SP+R++LD   +L L S++++T  
Sbjct: 193 QSHILRAQTDVILIGIETALADDPVLNCRLRGLGQRSPVRVVLDGGLRLPLSSRLVQTTD 252

Query: 242 LAPVIIV-TENDDPVLALAFRKKNINIIYC---DCR-DLKKLLTILVGRGVTSLLVEGGA 296
             P+ I   E   P            I+     DCR  L +L+  L  +G++S+LVEGGA
Sbjct: 253 AQPLWIACGEEASPERRYELTAAGCRILATEADDCRIALPELMDDLAAQGISSVLVEGGA 312

Query: 297 AVAHSFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
            VA SF++  LVD + ++RS + IG E G+     E ++   F  +R+  +G D   EY+
Sbjct: 313 GVAKSFLDEGLVDRLAIFRSPVEIGSEHGVAVDGLETHIADEFKILRQARYGDDAYAEYV 372

Query: 356 GK 357
            K
Sbjct: 373 RK 374


>gi|319784162|ref|YP_004143638.1| riboflavin biosynthesis protein RibD [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170050|gb|ADV13588.1| riboflavin biosynthesis protein RibD [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 371

 Score =  305 bits (781), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 163/362 (45%), Positives = 226/362 (62%), Gaps = 10/362 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQA 59
           ++ D RFM+AALR SR + G T+TNPSV  LIV+D     +++G GVTA GG PHAE +A
Sbjct: 7   AALDRRFMAAALRLSRKNAGRTATNPSVGTLIVRDDGNGPMIVGTGVTAVGGRPHAETEA 66

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           L EAG+ ARGATAYVTLEPC+H+GR+PPCA  ++  G+ RVV    DPD RVSG+G   L
Sbjct: 67  LAEAGDLARGATAYVTLEPCAHHGRTPPCANALVNAGVARVVGAASDPDSRVSGKGYAIL 126

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              G+ +V++++ +E    +  YL R + KR  + LK+A+S D  IG  G G V ITG I
Sbjct: 127 RAAGVEVVEKVLAAEAAEQMAGYLIRSLRKRPEVILKLALSSDGKIGREGDGQVSITGDI 186

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++ +V+L+RA++DAILVGIGT L DDP LT RL GL+  SP RI+LD   +L   SK++ 
Sbjct: 187 ARREVYLMRAEADAILVGIGTALEDDPALTVRLPGLENRSPARIVLDRQIRLPEASKLVS 246

Query: 239 TALLAPVIIVT-ENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVE 293
                P+ I      DP+   A  +  +  I  +  +    L +LL  L   G+ S+LVE
Sbjct: 247 GVDRVPLYIAACLEADPLRRAALERAGVRFIGTETHEGGVALPELLEDLAALGMASVLVE 306

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           GGA VA +F+   LVD I+L++    IG+ GI SP++  ++   F  +R   FG D   E
Sbjct: 307 GGARVASAFLADGLVDRIVLFQGPDAIGDDGIASPVDADHIPAGFRKLRDMRFGEDSYAE 366

Query: 354 YI 355
           +I
Sbjct: 367 WI 368


>gi|241204003|ref|YP_002975099.1| riboflavin biosynthesis protein RibD [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857893|gb|ACS55560.1| riboflavin biosynthesis protein RibD [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 438

 Score =  305 bits (781), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 148/253 (58%), Positives = 188/253 (74%), Gaps = 1/253 (0%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M ++  D RFM+AA+R SRWH+G T+TNPSV CLIV+ G+++GR VTA GG PHAE QAL
Sbjct: 1   MRITPHDERFMAAAIRLSRWHLGRTATNPSVGCLIVRGGVIVGRAVTALGGRPHAETQAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAG  ARGATAYVTLEPCSH+G++PPC+Q +I  G+ RVV+ V DPD RVSGRG+  L 
Sbjct: 61  AEAGALARGATAYVTLEPCSHHGKTPPCSQALIAYGVARVVISVTDPDPRVSGRGIAMLR 120

Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI VD  ++E+EG+  L AYLTRQ + R ++TLK+AVS D MIG  G G V ITG  +
Sbjct: 121 EAGIEVDTGVLEAEGRHSLAAYLTRQTKNRPYVTLKLAVSADGMIGREGAGQVAITGPEA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           + QV  LRA++DAILVGIGT +ADDP LT R  GL+  SP+RI+LDP   L L SK+++T
Sbjct: 181 RAQVQALRAETDAILVGIGTAIADDPLLTVRSPGLESQSPIRIVLDPSLALPLTSKLVET 240

Query: 240 ALLAPVIIVTEND 252
           A   PVI+V   +
Sbjct: 241 AREVPVIVVASEE 253



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 54/96 (56%)

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
           A     + +++C+    + LL  L  RG++SLLVEGGA  A  F+ + LVD I LY++ +
Sbjct: 339 ALEAAGVEVVHCNPYHPEVLLPALATRGISSLLVEGGAKTARLFLEAGLVDRIQLYQAPV 398

Query: 319 VIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           VIGEGGI SPL+   +   F       FG D   EY
Sbjct: 399 VIGEGGIESPLDATDIPSGFAHTGTLMFGGDRLDEY 434


>gi|254718884|ref|ZP_05180695.1| riboflavin biosynthesis protein RibD [Brucella sp. 83/13]
 gi|265983870|ref|ZP_06096605.1| riboflavin biosynthesis protein RibD [Brucella sp. 83/13]
 gi|264662462|gb|EEZ32723.1| riboflavin biosynthesis protein RibD [Brucella sp. 83/13]
          Length = 373

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 168/356 (47%), Positives = 228/356 (64%), Gaps = 7/356 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM A +R++R H GLT TNPSV  +IVKDG+++GRGVTA GG PHAE QAL EAGE 
Sbjct: 15  DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEAGEA 74

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPC+H+GR+PPCA+ ++  G+ RVVV   DPD RVSG+G   L + GI +
Sbjct: 75  ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++  +    L  YL R   K   + LK+A+S D MIG  G G V ITG +S+ Q H+
Sbjct: 135 VPGILSEQAADDLAGYLNRSARKCPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD   +L   SK++++A   P+
Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPPSSKLVRSADTQPL 254

Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
            +    + P     A       I+  +  D    L +LL  L  +G+ S+LVEGGA VA 
Sbjct: 255 WVACGEEAPDERRAALSAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314

Query: 301 SFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           SF++ +LVD +I++RS +VIG   G+     E ++   F  +RR  +  D C EY+
Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYV 370


>gi|90419410|ref|ZP_01227320.1| riboflavin biosynthesis protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336347|gb|EAS50088.1| riboflavin biosynthesis protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 383

 Score =  301 bits (772), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 168/365 (46%), Positives = 221/365 (60%), Gaps = 12/365 (3%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEV 57
           P +  D RFM+AA+R+++ HVG T+TNPSVA LIV+D      ++GRGVTA GG PHAE 
Sbjct: 14  PATDADRRFMAAAIRYAQRHVGRTATNPSVATLIVRDDGTGPRIVGRGVTAIGGRPHAET 73

Query: 58  QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            AL EAGE ARGATAYVTLEPC+H+GR+PPCA+ ++  GI RVV    DPD RV GRG  
Sbjct: 74  GALAEAGELARGATAYVTLEPCAHHGRTPPCAEALVTAGIARVVSAAADPDPRVDGRGHA 133

Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
            L   G+ +  R+M +E    +  YLTR    R  I LK+A+S+D  IG+ G G V ITG
Sbjct: 134 ILRAGGLSVTPRVMAAEAAAPISGYLTRHGAGRPEILLKMALSRDGRIGIRGGGQVKITG 193

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
            ++  Q HL+RA+ D IL+G GT   DDP L CRL G+ + SP RI+LDP  +   D  I
Sbjct: 194 AVADAQTHLVRARHDTILIGAGTAQEDDPRLDCRLPGMADRSPNRIVLDPRLRTPPDLTI 253

Query: 237 IKTALLAPVIIVT-ENDDPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTS 289
            +TA   P +I T  + DP    A  ++ +  I C+         L +LL  L   GV S
Sbjct: 254 ARTAAETPTLIATLASADPERRAALARQGVQFIACEADPETGRIALPELLEDLAATGVAS 313

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           +LVEGGA    SF++S LVD +IL +  + IGE G+ +P++       F  VR   FG D
Sbjct: 314 VLVEGGAETGASFLDSDLVDRLILVQGPVEIGEEGVRAPIDVATARCRFRLVREYRFGDD 373

Query: 350 VCLEY 354
              E+
Sbjct: 374 HWYEF 378


>gi|86357148|ref|YP_469040.1| 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidinedea
           minase protein [Rhizobium etli CFN 42]
 gi|86281250|gb|ABC90313.1| 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidinedea
           minase protein [Rhizobium etli CFN 42]
          Length = 435

 Score =  298 bits (763), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 147/253 (58%), Positives = 188/253 (74%), Gaps = 1/253 (0%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M V+  D  FM+AA+R SR H+G T+TNPSV C+IVKDG+V+G+ VTA GG PHAE QAL
Sbjct: 1   MSVTPDDEGFMAAAIRLSRRHLGRTATNPSVGCVIVKDGVVVGQAVTALGGRPHAEPQAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAG+ ARGATAYVTLEPCSH+G++PPCA+ +I CG+ RVV+ V DPD RVSGRG+  L 
Sbjct: 61  AEAGDLARGATAYVTLEPCSHHGKTPPCAEALIACGVARVVISVTDPDPRVSGRGISMLR 120

Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI VD  ++E+EG+  L AYLTRQ + R ++TLK+AVS D MIG  G G V ITG  +
Sbjct: 121 EAGIAVDAGVLEAEGRRSLAAYLTRQTKNRPYVTLKLAVSADGMIGRQGEGQVAITGPEA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           + +V  LRA++DAILVGIGT ++DDP LT R  GL+  SP+RI+LDP   L L SK++ T
Sbjct: 181 RAEVQTLRAETDAILVGIGTAISDDPLLTVRTPGLEAQSPIRIVLDPLLSLPLTSKLVAT 240

Query: 240 ALLAPVIIVTEND 252
           A   PVI+V   +
Sbjct: 241 ARDVPVILVASEE 253



 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 58/101 (57%)

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
           +A     + I+YC+    + LL  L  RG++SLL+EGGA  A  F+ + L+D I LY++ 
Sbjct: 335 VALEAAGVEIVYCNPYHPEVLLPALATRGISSLLIEGGAKTAKLFLEAGLLDRIQLYQAP 394

Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           +VIGEGGI SP++   +   F  +    FG D   EY  +N
Sbjct: 395 VVIGEGGIESPVQATDIPSGFTHMGTQLFGVDRLDEYEREN 435


>gi|15888505|ref|NP_354186.1| bifunctional riboflavin deaminase-reductase [Agrobacterium
           tumefaciens str. C58]
 gi|15156207|gb|AAK86971.1| bifunctional riboflavin deaminase-reductase [Agrobacterium
           tumefaciens str. C58]
          Length = 414

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 180/404 (44%), Positives = 235/404 (58%), Gaps = 56/404 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D +FM+ A+  S  H G T TNPSV C++VKDG +I   VTA GG PHAE QALE AGE 
Sbjct: 7   DEKFMARAIEVSLRHQGQTLTNPSVGCVLVKDGQIIAEAVTAIGGRPHAERQALEIAGEA 66

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+G++PPCA  ++E G+ RVVV VDDPD RVSGRG   L   GI+V
Sbjct: 67  ARGATAYVTLEPCSHWGKTPPCANALVEYGVARVVVAVDDPDERVSGRGYTILRDAGIVV 126

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  ++  EGK  L  YLTRQ++KR H+ LK+AVS D MIG  G G V ITG  S+  VH 
Sbjct: 127 ETGLLRDEGKRALAGYLTRQMKKRPHVILKLAVSADGMIGREGEGQVAITGAESRRVVHE 186

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT------ 239
           LRA+ D ILVGI T +ADDPELT R+ G++  SP+RI+LD  F+L L SK++++      
Sbjct: 187 LRARCDGILVGIRTAIADDPELTVRIAGMERRSPVRIVLDRQFELPLMSKLVRSAREVPV 246

Query: 240 ----------------------ALLA----------PVIIVTENDDPVLA-----LAFRK 262
                                 AL A          P + V ++  P +      +  R 
Sbjct: 247 IVAALPPSALPGISPSRGEIGEALSARSNFEPVSHSPAVDVGQDSAPSIPPLEGEMPGRA 306

Query: 263 KNIN------------IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
           +  N            +   +   L+ LL IL   G++ LLVEGGA  A SF+ + LVD 
Sbjct: 307 EGGNPNLRRQLLTDAGVQILEASTLENLLHILAESGISELLVEGGAFAAKSFLEAGLVDR 366

Query: 311 IILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           I+L+ S +VIGEGGI +PL    +  ++  V    +G D C +Y
Sbjct: 367 IMLFESPVVIGEGGIETPLRRADITGDYALVSETAYGPDRCFDY 410


>gi|190891194|ref|YP_001977736.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhizobium etli
           CIAT 652]
 gi|190696473|gb|ACE90558.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
           [Rhizobium etli CIAT 652]
          Length = 455

 Score =  293 bits (750), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 147/253 (58%), Positives = 187/253 (73%), Gaps = 2/253 (0%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M V+  D  FM+AA+R SR H+G T+TNPSV CLIVKDG+++G+ VTA GG PHAE QAL
Sbjct: 1   MSVTPDDEGFMAAAIRLSRQHLGRTATNPSVGCLIVKDGVIVGQAVTALGGRPHAEPQAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAG+ ARGATAYVTLEPCSH+G++PPCA+ +I  G+ RVV+ V DPD RVSGRG+  L 
Sbjct: 61  AEAGQLARGATAYVTLEPCSHHGKTPPCAEALIAYGVARVVISVTDPDPRVSGRGITMLR 120

Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI VD  ++E+EG+  L  YLTRQ + R ++TLK+AVS D MIG  G G V ITG  +
Sbjct: 121 DAGIEVDAGVLEAEGRRSLAGYLTRQTKNRPYVTLKLAVSADGMIGRQGEGQVAITGPEA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           + +V  LRA++DAILVGIGT ++DDP LT R  GL+  SP+RI+LDP   L L SK++ T
Sbjct: 181 RAEVQALRAETDAILVGIGTAISDDPLLTVRTPGLEAQSPIRIVLDPSLALPLTSKLVAT 240

Query: 240 ALLAPVIIV-TEN 251
           A   PVI+V +EN
Sbjct: 241 AREVPVILVASEN 253



 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 54/91 (59%)

Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            + I+YC+    + LL  L  RG++SLLVEGGA  A  F+ + LVD I LY++ +VIGEG
Sbjct: 361 GVEIVYCNPYHPEVLLPALATRGISSLLVEGGAKTARLFLEAGLVDRIELYQAPVVIGEG 420

Query: 324 GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           GI SPL+   +   F  +    FG D   EY
Sbjct: 421 GIESPLDATDIPSGFTHMGTQMFGVDRLDEY 451


>gi|116251387|ref|YP_767225.1| riboflavin biosynthesis protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115256035|emb|CAK07116.1| putative riboflavin biosynthesis protein [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 448

 Score =  288 bits (738), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 146/253 (57%), Positives = 187/253 (73%), Gaps = 1/253 (0%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M ++  D RFM+AA+R SRWH+G T+TNPSV CLIVKDG+++GR VTA  G PHAE QAL
Sbjct: 1   MSITPHDERFMAAAIRLSRWHLGRTATNPSVGCLIVKDGVIVGRAVTALSGRPHAETQAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EA   ARGATAYVTLEPCSH+G++PPC++ +I  G+ RVV+ V DPD RVSGRG+  L 
Sbjct: 61  AEASALARGATAYVTLEPCSHHGKTPPCSEALIAYGVARVVISVTDPDPRVSGRGIAMLR 120

Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI VD  ++E+EG+  L AYLTRQ + R ++TLK+AVS D MIG  G G V ITG ++
Sbjct: 121 EAGIEVDAGVLEAEGRHSLAAYLTRQTKNRPYVTLKLAVSADGMIGREGEGQVAITGPLA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           + Q   LRA++DAILVGIGT +ADDP LT R  GL+  SP+RI+LDP   L L SK+++T
Sbjct: 181 RAQAQALRAETDAILVGIGTAIADDPLLTVRSPGLESQSPIRIVLDPFLALPLTSKLVET 240

Query: 240 ALLAPVIIVTEND 252
           A   PVI+V   +
Sbjct: 241 ARQVPVIVVASEE 253



 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 52/96 (54%)

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
           A     + +++C+    + LL  L  RG++SLLVEGGA  A  F+ + LVD + LY++  
Sbjct: 349 ALEAAGVEVVHCNPYHPEVLLPALATRGISSLLVEGGAKTARLFLKAGLVDRVQLYQAPA 408

Query: 319 VIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           VIGE GI SPL+   +   F       FG D   EY
Sbjct: 409 VIGERGIESPLDATDIPSGFAHTGTLLFGEDRLDEY 444


>gi|118587985|ref|ZP_01545395.1| riboflavin biosynthesis protein [Stappia aggregata IAM 12614]
 gi|118439607|gb|EAV46238.1| riboflavin biosynthesis protein [Stappia aggregata IAM 12614]
          Length = 374

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 162/335 (48%), Positives = 226/335 (67%), Gaps = 10/335 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DG--IVIGRGVTAYGGCPHAEVQ 58
           +S+ DARFM+AA R +R  +G    NPSVA LIV+  DG  +V GRGVT+  G  HAEV 
Sbjct: 4   LSNLDARFMAAAERLTRRGLGRVWPNPSVAALIVRFEDGAAVVAGRGVTSRPGMAHAEVN 63

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           AL +AGE+A+GAT YVTLEPCSHYGR+PPCA+ +IE G++RVVV + DP+ RV+GRG+  
Sbjct: 64  ALNQAGEKAQGATCYVTLEPCSHYGRTPPCAKALIEAGVKRVVVGMLDPNPRVAGRGVGM 123

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L + GI +V  + E   +     +  RQ+++R  + LK+AVS+D  IG AG G V I+G 
Sbjct: 124 LREAGIEVVVGVREKAMQALYRGFTYRQLKQRPVVFLKLAVSRDGFIGRAGEGQVKISGP 183

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
           +S  +VH  RA+ DAILVG GT LADDP+LTCRL GL + SP+R+I+D   +LSL SK++
Sbjct: 184 LSMRKVHGYRAECDAILVGSGTALADDPQLTCRLPGLADRSPVRVIIDRCARLSLTSKLV 243

Query: 238 KTALLAPVIIV---TENDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLLV 292
           +T +  PV +V   T + D +  LA    N+  +  +   +K   +L+ L  RG+T ++V
Sbjct: 244 QTCVDVPVWLVCSNTADADKIADLAAAGVNVIRVPAEETGIKPSVILSALATRGITRVMV 303

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           EGG+ +A SF+ + LVD + +    IVIGEGGIP+
Sbjct: 304 EGGSRLASSFLAADLVDDLCVVTGDIVIGEGGIPA 338


>gi|319898992|ref|YP_004159085.1| Riboflavin biosynthesis protein ribD [Bartonella clarridgeiae 73]
 gi|319402956|emb|CBI76507.1| Riboflavin biosynthesis protein ribD [Bartonella clarridgeiae 73]
          Length = 374

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 160/378 (42%), Positives = 228/378 (60%), Gaps = 22/378 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK----DGIVIGRGVTAYGGCPHAE 56
           M   + D RFM+AA+R +  H+ LT  NPSV  LIVK    D  ++G GVTA  G PHAE
Sbjct: 1   MSREAQDKRFMAAAIRLAERHINLTGKNPSVGALIVKNNETDASIVGYGVTAVQGRPHAE 60

Query: 57  VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           VQAL  AG  A GATAY+TLEPCSHYG++PPC   +I+ GI RVV+ + DPD RV GRG+
Sbjct: 61  VQALLMAGPLAYGATAYITLEPCSHYGKTPPCVNALIDAGIARVVIALPDPDQRVYGRGI 120

Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
             L   GI +V+ ++  E    L AYL  +  +R  +TLK+A+S DN +G  G  ++ I+
Sbjct: 121 ALLRSAGIEVVEGVLAEEAFETLSAYLCVKKLQRCEVTLKMAISADNGVGKKGQSNLKIS 180

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
           G IS +Q H+LRAQ+D I+VGIGT+LADDP+L CRL GL+  SP+R+ILD + ++ LD+K
Sbjct: 181 GEISHSQTHILRAQNDVIMVGIGTILADDPKLDCRLPGLEMRSPIRVILDKNLRIPLDAK 240

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNI-----NIIYCDCRDLKKL------LTILVG 284
           +++TA   P  ++         L+ ++K I      +  C       L      L +L  
Sbjct: 241 VVQTAANIPTWVICGT-----VLSKKRKKIALEQYGVTVCSVEANNNLIPPLAILRLLYQ 295

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           R + S+L+EGGA     F+N+  VD +I + + I++G+  I +P  E YL + F  +   
Sbjct: 296 RKINSVLLEGGAKTGEIFLNASCVDRLICFYAPIILGKDRIEAPHFESYLSE-FNKIEMR 354

Query: 345 YFGSDVCLEYIGKNLCLQ 362
             G+D   ++  K LC Q
Sbjct: 355 MLGNDRLYKWRRKILCSQ 372


>gi|254500590|ref|ZP_05112741.1| riboflavin biosynthesis protein RibD [Labrenzia alexandrii DFL-11]
 gi|222436661|gb|EEE43340.1| riboflavin biosynthesis protein RibD [Labrenzia alexandrii DFL-11]
          Length = 375

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 165/364 (45%), Positives = 221/364 (60%), Gaps = 19/364 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-----IVIGRGVTAYGGCPHAEV 57
           ++  D RFM+AA R +R  +G    NP+VA LIV++      +++GRGVT+  G  HAEV
Sbjct: 4   ITETDNRFMAAAERLARRGLGRVWPNPAVAALIVQENSEGVPVLVGRGVTSRPGMAHAEV 63

Query: 58  QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            AL +AGE A+GAT YVTLEPCSHYGR+PPC+  +IE G+ RVVV + DP+ RVSGRG+ 
Sbjct: 64  NALTQAGELAKGATCYVTLEPCSHYGRTPPCSLALIEAGVSRVVVGMMDPNPRVSGRGVG 123

Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
            L   GI +V  + E   K     +  RQ   R  + LK+AVS+D  IG  G G + I+G
Sbjct: 124 MLQDAGIELVTGVRERALKDLYRGFTYRQRRHRPSVFLKLAVSKDGFIGREGEGQIKISG 183

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
            IS   VH  RA SDAILVGIGT LADDP+LTCRL GL   SP+R+++D   +L L SK+
Sbjct: 184 PISMRMVHGFRAASDAILVGIGTALADDPQLTCRLPGLHARSPVRVVVDRQARLPLMSKL 243

Query: 237 IKTALLAPVIIVTEN---DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTS 289
           ++T +  PV +V  N    D V ALA     +NII         D   +L+ L  RG+T 
Sbjct: 244 VRTCVDVPVWLVCGNAADADKVNALA--AAGVNIIRVPATQTGIDPDVILSALATRGITR 301

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDY 345
           L+VEGGA +A SF+N+ L+D + +    + IGEGGIP+     L     +  F  +   Y
Sbjct: 302 LMVEGGARLASSFLNAGLIDDLCVVTGDMEIGEGGIPALHDLDLANVLTDPQFARIGAGY 361

Query: 346 FGSD 349
            G+D
Sbjct: 362 LGAD 365


>gi|316934111|ref|YP_004109093.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris
           DX-1]
 gi|315601825|gb|ADU44360.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris
           DX-1]
          Length = 389

 Score =  279 bits (713), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 161/360 (44%), Positives = 214/360 (59%), Gaps = 12/360 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM  AL   R   G T TNP+V  ++VKDG+++GRG T  GG PHAEV+AL  AGE 
Sbjct: 27  DQRFMQLALALGRRGQGRTGTNPAVGAVLVKDGVIVGRGWTQDGGRPHAEVEALRRAGEA 86

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGAT YVTLEPCSH+GRSPPCA  I+  GI RVV  ++DP+  V+G+G   L   GI V
Sbjct: 87  ARGATLYVTLEPCSHHGRSPPCADAIVAAGIARVVSAIEDPNPLVAGQGHAKLRAAGIAV 146

Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  + ++     HA +L R   +R H+TLK+AVS D  I  AG   V ITG  +  + HL
Sbjct: 147 EIGICADEATHDHAGHLCRISARRPHVTLKLAVSADGKIAAAGHKQVAITGEAANARTHL 206

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRA+SDA+LVGIGTVLADDPELTCRL G+   SP+R++LD   ++   SK++ +A    +
Sbjct: 207 LRARSDAVLVGIGTVLADDPELTCRLPGMAAQSPIRVVLDRSLRIPSASKLVHSARTTSL 266

Query: 246 -IIVTENDDPVLALAFRKKNINIIY-CDCR-----DLKKLLTILVGRGVTSLLVEGGAAV 298
            ++ +E  D   A         +++  DC      DL  +L  L  +GVT LLVEGGA V
Sbjct: 267 WLMASEIADAATAARLGAAGAEVVHVADCAAAPGLDLPAVLHALSDKGVTRLLVEGGARV 326

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           A +F+  R  D I L+RS+  IG  G+ +    PL       ++     +  GSD    Y
Sbjct: 327 AAAFVTQRRADEIRLWRSETTIGPDGVDALAGLPLAAITDSPHWRVRSSERVGSDTLTIY 386


>gi|27380142|ref|NP_771671.1| riboflavin biosynthesis protein [Bradyrhizobium japonicum USDA 110]
 gi|27353296|dbj|BAC50296.1| riboflavin biosynthesis protein [Bradyrhizobium japonicum USDA 110]
          Length = 382

 Score =  278 bits (712), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 158/359 (44%), Positives = 214/359 (59%), Gaps = 11/359 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM  AL   R   G T  NP+V  +IVKDG+++GRG T  GG PH E +AL  AGE 
Sbjct: 21  DRRFMQLALALGRRGQGRTWPNPAVGAVIVKDGVIVGRGWTQPGGRPHGEPEALRRAGEA 80

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGAT YVTLEPCSH+G+SPPCA  +I  GI+RVV  ++DP+  V+G+G   L   GI V
Sbjct: 81  ARGATLYVTLEPCSHFGKSPPCADAVIAAGIKRVVAAIEDPNPEVAGQGHARLRAAGITV 140

Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  + +    F HA +  R  ++R H+ LK+AVS D  IG AG   V ITG   +N+VHL
Sbjct: 141 DVGLCAAEAAFDHAGHFRRIRDRRPHVILKLAVSPDGKIGAAGGKPVAITGEAVRNRVHL 200

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQSDAILVGIGTVLADDP LTCRL G+   SP+R++LD   ++S  S+++++A   P+
Sbjct: 201 LRAQSDAILVGIGTVLADDPLLTCRLPGMAARSPVRVVLDQSLRMSAASQLVRSARETPL 260

Query: 246 IIV-TENDDPVLALAFRKKNINIIY-----CDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
            +V +E  +   A         II          DL  +L +L  +G++ L+VEGG+ VA
Sbjct: 261 WVVGSELAEAAAATRLGAAGAQIIRVPPGNASGLDLPAVLHVLAEKGISRLMVEGGSRVA 320

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
            SF+ + LVD I L+R    +G  G+ +    PL +    + +     + F  D    Y
Sbjct: 321 ASFVAADLVDEIWLFRGAEEVGSSGVDALDALPLSKITQSQAYKVHASETFDKDTLTIY 379


>gi|218662593|ref|ZP_03518523.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
           [Rhizobium etli IE4771]
          Length = 287

 Score =  278 bits (711), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 147/252 (58%), Positives = 186/252 (73%), Gaps = 1/252 (0%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M ++  D  FM+AA+R SR H+G T+TNPSV CLIVKDG+V+G+ VTA GG PHAE QAL
Sbjct: 1   MSITPHDESFMAAAIRLSRRHLGRTATNPSVGCLIVKDGVVVGQAVTALGGRPHAEPQAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAGE ARGATAYVTLEPCSH+G++PPCA+ +I  G+ RVV+ V DPD RVSGRG+  L 
Sbjct: 61  AEAGEAARGATAYVTLEPCSHHGKTPPCAEALIAHGVARVVISVTDPDPRVSGRGIAMLR 120

Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI VD  ++E+EG+  L  YLTRQ + R ++TLK+AVS D MIG AG G V ITG  +
Sbjct: 121 EAGIEVDAGVLEAEGRRSLAGYLTRQTKSRPYVTLKLAVSADGMIGRAGEGQVAITGPEA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           + +V  LRA++DAILVGIGT ++DDP LT R  GL+  SP+RI+LDP   L L SK++ T
Sbjct: 181 RAEVQALRAETDAILVGIGTAISDDPLLTVRTPGLEAQSPIRIVLDPSLALPLTSKLVAT 240

Query: 240 ALLAPVIIVTEN 251
           A   PVI+V   
Sbjct: 241 ARDVPVILVASE 252


>gi|319408448|emb|CBI82103.1| Riboflavin biosynthesis protein ribD [Bartonella schoenbuchensis
           R1]
          Length = 375

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 159/380 (41%), Positives = 225/380 (59%), Gaps = 22/380 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPHAE 56
           M   + D RFM+AA+R ++ H+GLT  NPSV  LIV+D      ++G GVTA  G PHAE
Sbjct: 2   MNKEAQDNRFMAAAIRLAQRHIGLTGQNPSVGALIVRDDDGKASIVGYGVTAIHGRPHAE 61

Query: 57  VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           VQAL  AG  + GATAYVTLEPCSHYG + PC   +I+ GI RVV+ + DPD RV GRG+
Sbjct: 62  VQALLMAGPLSHGATAYVTLEPCSHYGETSPCVNALIDSGISRVVIALTDPDKRVCGRGI 121

Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
             L   GI +V+ ++  E    L AYL  +  +R  +TLK+A+S DN IG+   G V I+
Sbjct: 122 ALLRAAGIEVVEGVLAREAFETLSAYLCIKKLQRCEVTLKMAISADNGIGIKKKGRVEIS 181

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
           G  +    H+LRAQ+DAI+VGIGT+LAD+P+L+CRL GL+  SP+RIILD + ++  D+K
Sbjct: 182 GAQAHTYTHILRAQNDAIMVGIGTILADNPQLSCRLPGLEMRSPVRIILDANLRIPFDAK 241

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC-----------DCRDLKKLLTILVG 284
           +I+TA   P  ++          A + K I +  C                  +L +L  
Sbjct: 242 VIQTATKIPTWVICNA-----TFAEKSKKIALEQCGVCIFPIEMSAHLMQPFAILQLLCQ 296

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           RG+ S+L+EGGA     F+N+  VD +I + + +++G   I +P    YL + F  +   
Sbjct: 297 RGINSILLEGGAKTGEIFLNAGCVDQLICFHAPVILGADRIDAPHFATYLSE-FNEIETK 355

Query: 345 YFGSDVCLEYIGKNLCLQEL 364
             G+D   ++  K LCLQ L
Sbjct: 356 MLGNDRLCKWRRKTLCLQGL 375


>gi|163868466|ref|YP_001609675.1| riboflavin biosynthesis protein ribD [Bartonella tribocorum CIP
           105476]
 gi|161018122|emb|CAK01680.1| Riboflavin biosynthesis protein ribD [Bartonella tribocorum CIP
           105476]
          Length = 375

 Score =  276 bits (706), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 156/373 (41%), Positives = 224/373 (60%), Gaps = 19/373 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-----IVIGRGVTAYGGCPHAEVQALE 61
           D RFM+AA+R +  HVGLT  NPSV  LIV++       ++G GVTA+ G PHAEVQAL 
Sbjct: 7   DERFMAAAIRLAERHVGLTGENPSVGALIVQNDDCAGPFIVGYGVTAFHGRPHAEVQALR 66

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG  A+GATAYVTLEPC+HYG++ PC   +I+ GI R+VV + D D RV GRGL  L +
Sbjct: 67  MAGPLAQGATAYVTLEPCAHYGKTSPCVNALIDSGISRIVVALTDCDKRVDGRGLALLRE 126

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +V+ ++  E    L  +   +  +R  +T K+AVS DN +G    G + I+G +S 
Sbjct: 127 AGIKVVEGILAEEAFESLWTHWCIKKMQRCAVTFKMAVSADNSVGKRDEGEIRISGALSH 186

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              H+LRAQ++AILVGIGT+LADDP+L CRL G++  SP+RIILD    + L++K+++TA
Sbjct: 187 THTHILRAQNNAILVGIGTILADDPQLNCRLPGMEMRSPIRIILDADLSIPLEAKVVQTA 246

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK---------KLLTILVGRGVTSLL 291
           +  P  ++ + D   L+   +K  +         ++          LL IL   G+ S+L
Sbjct: 247 IKIPTWVICDVD---LSKKSKKNTLEQYGVSVYSVEMNNGYVEPFALLQILYKHGINSVL 303

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           +EGG      F+N+  VD +I + S +V+G+  I +P    YL + F  V    FG+D  
Sbjct: 304 LEGGVKTGEKFLNAGCVDHLICFYSPVVLGKKRIEAPHFGNYLSQ-FHEVETKMFGNDRF 362

Query: 352 LEYIGKNLCLQEL 364
            ++  K LC QEL
Sbjct: 363 YKWRRKTLCSQEL 375


>gi|240850690|ref|YP_002972090.1| riboflavin biosynthesis protein ribD [Bartonella grahamii as4aup]
 gi|240267813|gb|ACS51401.1| riboflavin biosynthesis protein ribD [Bartonella grahamii as4aup]
          Length = 375

 Score =  275 bits (704), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 154/370 (41%), Positives = 224/370 (60%), Gaps = 13/370 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-----GIVIGRGVTAYGGCPHAEVQALE 61
           D RFM+AA+R +  HVGLT  NPSV  LIV++       ++G GVTA  G PHAEVQAL 
Sbjct: 7   DERFMAAAIRLAERHVGLTGENPSVGTLIVRNDNSAGAFIVGYGVTAIHGSPHAEVQALH 66

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG  A+GATAYVTLEPC+HYG++ PC   +I+ GI RVVV + D D RV G G+  L  
Sbjct: 67  MAGSLAQGATAYVTLEPCAHYGKTSPCVNALIDSGISRVVVALTDCDKRVDGHGIALLRA 126

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +V+ ++  E    L  +   +  +R  +T K+A+S DN +G    GSV I+G +S 
Sbjct: 127 AGIEVVEGILAEEAFESLWTHWCIRKIQRCAVTFKMAISADNGVGKREKGSVKISGTLSH 186

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              H+LRAQ++AILVGIGT+LADDP+L CRL G++  SP+RIILD    + LD+K+++TA
Sbjct: 187 AHTHILRAQNNAILVGIGTILADDPQLNCRLPGMEVRSPIRIILDTDLSIPLDAKVVQTA 246

Query: 241 LLAPVIIVTEND--DPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEG 294
           +  P  ++ + D        A  +  +++   +    C +   LL +L   G+ S+L+EG
Sbjct: 247 MKIPTWVICDVDLSKKSKKNALEQYGVSVYSVEMNNGCVEPFALLQMLYKYGINSVLLEG 306

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           G     +F+N+  VD +I + + +++GEG + +P    YL + F  V    FG+D   ++
Sbjct: 307 GVKTGETFLNAGCVDHLICFYAPVILGEGRVEAPHFGNYLSQ-FRKVESRMFGNDRFYKW 365

Query: 355 IGKNLCLQEL 364
             K LC Q L
Sbjct: 366 RRKALCSQGL 375


>gi|192291382|ref|YP_001991987.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris
           TIE-1]
 gi|192285131|gb|ACF01512.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris
           TIE-1]
          Length = 389

 Score =  275 bits (703), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 160/362 (44%), Positives = 216/362 (59%), Gaps = 12/362 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           S D RFM  AL   R   G T+ NP+V  ++VKDG+++GRG T  GG PHAEV+AL  AG
Sbjct: 25  SADRRFMQLALALGRRGQGRTAPNPAVGAVLVKDGVIVGRGWTQDGGRPHAEVEALRRAG 84

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           + ARGAT YVTLEPCSH+GR+PPCA  +I  GI RVV  ++DP+  V+G+G   L   GI
Sbjct: 85  DAARGATLYVTLEPCSHHGRTPPCADAVIAAGIARVVSAIEDPNPLVAGQGHARLRAAGI 144

Query: 125 IVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V+  + +E     HA   R++ ++R H+TLK+AVS D  I  AG   V ITG  +  + 
Sbjct: 145 AVEIGVCAEEAARDHAGHIRRIRDRRPHVTLKLAVSADGKIAAAGHKPVAITGEAANART 204

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           HLLRA+SDA+LVGIGTVLADDPELTCRL G+   SP+R++LD   ++   SK++ +A  +
Sbjct: 205 HLLRARSDAVLVGIGTVLADDPELTCRLPGMAAQSPIRVVLDRALRIPAASKLLHSARTS 264

Query: 244 PV-IIVTENDDPVLALAFRKKNINIIY-CDCR-----DLKKLLTILVGRGVTSLLVEGGA 296
           P+ ++ +E  +   A         +I+  DC      DL  +L  L  +GVT LLVEGGA
Sbjct: 265 PLWLMASEIAEAATAARLGAAGAEVIHVADCADTPGLDLPAVLHALADKGVTRLLVEGGA 324

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
            VA S +   L D I L+RS   IG  GI +    PL       ++     +  G+D   
Sbjct: 325 RVAASLVTGELADEIWLWRSDNPIGADGIDALHDLPLTAMTDSPHWRVRTTERVGADTLT 384

Query: 353 EY 354
            Y
Sbjct: 385 IY 386


>gi|218673496|ref|ZP_03523165.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
           [Rhizobium etli GR56]
          Length = 419

 Score =  274 bits (701), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 135/233 (57%), Positives = 171/233 (73%), Gaps = 1/233 (0%)

Query: 21  HVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCS 80
           H+G T+TNPSV CLIVKDG+ +G+ VTA GG PHAE QAL EAG+ ARGATAYVTLEPCS
Sbjct: 2   HLGRTATNPSVGCLIVKDGVTVGQAVTALGGRPHAEPQALAEAGQLARGATAYVTLEPCS 61

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLH 139
           H+G++PPCA+ +I  G+ RVV+ V DPD RVSGRG+  L   GI VD  ++++EG+  L 
Sbjct: 62  HHGKTPPCAEALIASGVARVVISVTDPDPRVSGRGVSMLRDAGIEVDAGVLQAEGRRSLA 121

Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199
            YLTRQ + R ++TLK+AVS D MIG  G G V ITG  ++ +V  LRA++DAILVGIGT
Sbjct: 122 GYLTRQTKNRPYVTLKLAVSADGMIGRKGEGQVAITGPEARAEVQALRAETDAILVGIGT 181

Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252
            ++DDP LT R  GL+  SP+RI+LDP   L L SK++ TA   PVI+V   D
Sbjct: 182 AISDDPLLTVRTPGLEAQSPVRIVLDPSLALPLTSKLVATARDVPVIVVASED 234



 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 54/96 (56%)

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
           A     + I+YC+    + LL  L  RG++SLLVEGGA  A  F+ + LVD I LY++ +
Sbjct: 320 ALEAAGVEIVYCNPYHPEILLPALATRGISSLLVEGGAKTARLFLEAGLVDRIQLYQAPV 379

Query: 319 VIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           +IG  GI SPL+   +   F  +    FG+D   EY
Sbjct: 380 IIGADGIESPLDATDIPSGFAHMGTRIFGADRLDEY 415


>gi|39935793|ref|NP_948069.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris
           CGA009]
 gi|39649646|emb|CAE28168.1| putative riboflavin-specific deaminase / reductase
           [Rhodopseudomonas palustris CGA009]
          Length = 389

 Score =  273 bits (698), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 158/362 (43%), Positives = 214/362 (59%), Gaps = 12/362 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           S D RFM  AL   R   G T+ NP+V  ++VKDG+++GRG T  GG PHAEV+AL  AG
Sbjct: 25  SADRRFMQLALALGRRGQGRTAPNPAVGAVLVKDGVIVGRGWTQDGGRPHAEVEALRRAG 84

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           + ARGAT YVTLEPCSH+GR+PPCA  +I  GI RVV  ++DP+  V+G+G   L   GI
Sbjct: 85  DAARGATLYVTLEPCSHHGRTPPCADAVIAAGIARVVSAIEDPNPLVAGQGHARLRTAGI 144

Query: 125 IVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V+  + +E     HA   R++ ++R H+TLK+AVS D  I  AG   V ITG  +  + 
Sbjct: 145 AVEIGVCAEEAARDHAGHIRRIRDRRPHVTLKLAVSADGKIAAAGHKPVAITGEAANART 204

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           HLLRA+SDA+L+GIGTVLADDPELTCRL G+   SP+R++LD   ++   SK++ +A   
Sbjct: 205 HLLRARSDAVLIGIGTVLADDPELTCRLPGMAAQSPIRVVLDRSLRIPAASKLLHSARTT 264

Query: 244 PV-IIVTENDDPVLALAFRKKNINIIY-CDCR-----DLKKLLTILVGRGVTSLLVEGGA 296
           P+ ++ +E  +   A         +I+  DC      DL  +L  L  +GVT L VEGGA
Sbjct: 265 PLWLMASEIAEAATAARLGAAGAEVIHVADCADTPGLDLPAVLHALADKGVTRLFVEGGA 324

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
            VA S +   L D I L+RS   IG  GI +    PL       ++     +  G+D   
Sbjct: 325 RVAASLVAGELADEIWLWRSDNAIGADGIDALHDLPLTAMTDSPHWRVRTTERVGADTLT 384

Query: 353 EY 354
            Y
Sbjct: 385 IY 386


>gi|328543537|ref|YP_004303646.1| Bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
           reductase [polymorphum gilvum SL003B-26A1]
 gi|326413281|gb|ADZ70344.1| Bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Polymorphum gilvum SL003B-26A1]
          Length = 388

 Score =  272 bits (696), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 158/366 (43%), Positives = 217/366 (59%), Gaps = 14/366 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQ 58
           V   D R+M+AA+  +R  +G    NPSV  LIV D     +V+GRGVT+  G PHAEV 
Sbjct: 18  VCDIDRRYMAAAVALARRGLGRVWPNPSVGALIVADTGGAPVVVGRGVTSPPGGPHAEVN 77

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           AL +AG+ ARGAT YVTLEPCSH+GR+PPC+  ++  G+RRVV+ + DP+ RVSGRG+  
Sbjct: 78  ALRQAGDRARGATCYVTLEPCSHHGRTPPCSAALVSAGVRRVVIGIADPNRRVSGRGIGM 137

Query: 119 LSQKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L   GI V   +E+     LH  +  R + +R  +TLK+A+S D  IG  G G + ITG 
Sbjct: 138 LRDAGIAVTVGVEAVACRDLHLGHSLRVLAQRPAVTLKLALSADGFIGRLGAGQIAITGS 197

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
           +SK   H +RA+SD ILVG+GTVLADDP+LTCRL GL+  SP+R++LDP+ +L L S+++
Sbjct: 198 LSKRFAHGIRARSDGILVGVGTVLADDPQLTCRLPGLEGRSPVRVVLDPNARLPLGSRLV 257

Query: 238 KTALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLV 292
           ++A   PV  V  N  DP    A  +  + II         D    LT L  RG+T ++V
Sbjct: 258 RSAAEVPVWAVVANAADPDRLGALARAGVLIIRVPAGPEGIDPLVALTALSARGITRVMV 317

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGS 348
           EGG+ VA +F+ + +VD   L      +G GG+     EG         F  V    +G 
Sbjct: 318 EGGSRVAAAFLRADMVDEAWLVHGPASLGAGGVLPFGAEGADALAGTGRFHVVETGIWGE 377

Query: 349 DVCLEY 354
           D  + Y
Sbjct: 378 DHYVRY 383


>gi|319404317|emb|CBI77910.1| Riboflavin biosynthesis protein ribD [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 374

 Score =  271 bits (694), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 160/377 (42%), Positives = 224/377 (59%), Gaps = 20/377 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPHAE 56
           M  +  D RFM+ A+R +  H+GLT  NPSV  LIV++      ++G GVTA  G PHAE
Sbjct: 1   MNKAEQDKRFMAVAIRLAERHIGLTGENPSVGALIVQNKGAGASIVGYGVTAIQGRPHAE 60

Query: 57  VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           VQAL  AG  A GATAYVTLEPCSHYG + PC   +I  GI RVV+ + DPD RV G G+
Sbjct: 61  VQALLMAGPLACGATAYVTLEPCSHYGETSPCVNALINSGITRVVIALSDPDQRVYGCGI 120

Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
             L   GI +V+ ++  E    L AYL  +  +R  +TLK+A+S DN IG  G GSV ++
Sbjct: 121 ALLRAAGIEVVEGVLAEEAFETLSAYLCVKKLQRCEVTLKMAISADNGIGKKGQGSVRVS 180

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
           G IS+ Q H+LRAQ++ I+VGIGT+LADDP+L CRL GL+  SP+R+ILD   ++ LD+K
Sbjct: 181 GEISRTQTHILRAQNNVIMVGIGTILADDPQLDCRLPGLEMRSPIRVILDKDLRIPLDAK 240

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKK----NINIIYCDCRDLKKLLT------ILVGR 285
           +++TA   P  ++        +L  RKK       I  C       LL+      +L  R
Sbjct: 241 VVQTAANIPTWVICSTG----SLKKRKKIALEQCGITICSVDTNNNLLSPFAILQLLYQR 296

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
            + S+L+EGGA     F+++  VD +I + + I++G+  I +P  + YL + F  V    
Sbjct: 297 KINSVLLEGGAKTGKIFLDAGCVDCLICFYAPIILGKDRIKAPHFQSYLSE-FNKVEIRM 355

Query: 346 FGSDVCLEYIGKNLCLQ 362
            G+D   ++  K LC Q
Sbjct: 356 LGNDRLYKWRRKILCSQ 372


>gi|319407322|emb|CBI80963.1| Riboflavin biosynthesis protein ribD [Bartonella sp. 1-1C]
          Length = 374

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 161/375 (42%), Positives = 225/375 (60%), Gaps = 16/375 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPHAE 56
           M  +  D RFM+AA+R +  H+GLT  NPSV  LIV++      ++G GVTA  G PHAE
Sbjct: 1   MDKAEQDKRFMAAAIRLAERHIGLTGENPSVGALIVQNKGAGASIVGYGVTALQGRPHAE 60

Query: 57  VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           VQAL  AG  A GATAYVTLEPCSHYG + PC   +I  GI RVV+ + DPD RV G G+
Sbjct: 61  VQALLMAGPLAYGATAYVTLEPCSHYGETSPCVNALINSGITRVVIALSDPDQRVYGCGI 120

Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
             L   GI +V+ ++  E    L AYL  +  +R  +TLK+A+S DN IG  G GSV I+
Sbjct: 121 ALLRAAGIEVVEGVLADEAFETLSAYLCVKKLQRCEVTLKMAISADNGIGKKGKGSVRIS 180

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
           G IS+ Q H+LRAQ++ I+VGIGT+LADDP+L CRL GL+  SP+R+ILD   ++ L +K
Sbjct: 181 GEISRTQTHILRAQNNVIMVGIGTILADDPQLDCRLPGLEIRSPIRVILDKDLRIPLCAK 240

Query: 236 IIKTALLAP--VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT------ILVGRGV 287
           +++TA   P  VI  T +      +A  +  + I  C       LL+      +L  R +
Sbjct: 241 VVQTAANIPTWVICSTASSKKRKKIALEQCGVTI--CSVNTNNNLLSPFAILQLLYQRKI 298

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
            S+L+EGGA     F+++  VD +I + + I++G+  I +P  + YL + F  V     G
Sbjct: 299 NSVLLEGGAKTGKIFLDAGCVDCLICFYAPILLGKDRIKAPHFQSYLSE-FNEVEMRMLG 357

Query: 348 SDVCLEYIGKNLCLQ 362
           +D   ++  K LC Q
Sbjct: 358 NDRLYKWRRKILCSQ 372


>gi|49475527|ref|YP_033568.1| riboflavin biosynthesis protein ribD [Bartonella henselae str.
           Houston-1]
 gi|49238333|emb|CAF27557.1| Riboflavin biosynthesis protein ribD [Bartonella henselae str.
           Houston-1]
          Length = 365

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 148/366 (40%), Positives = 225/366 (61%), Gaps = 13/366 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDG-----IVIGRGVTAYGGCPHAEVQALEEAGE 65
           M+AA+R +  HVGLT  NPSV  +I ++       ++G GVTA  G PHAEVQAL+ AG 
Sbjct: 1   MAAAIRLAERHVGLTGENPSVGTIIARNDENVGVYIVGYGVTAIQGRPHAEVQALQMAGS 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            A GATAYVTLEPCSHYG++ PC   +++ GI RVV+ + D D RV+GRG+  L   GI 
Sbjct: 61  LAHGATAYVTLEPCSHYGKTSPCVNTLLKSGISRVVIALTDLDKRVNGRGIALLRAAGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +++ ++  E    L  Y   + ++R  +TLK+A+S DN +G  G G + I+G  S  Q H
Sbjct: 121 VIEGVLAKEAFESLCNYWCIRKQQRCAVTLKMAISADNGVGKKGQGGIKISGTTSHAQTH 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
           +LRAQ++AILVGIGT+LADDP+L CRL G++ HSP+RIILD +  + L++K+++TA + P
Sbjct: 181 ILRAQNNAILVGIGTILADDPQLNCRLPGMEMHSPIRIILDANLCIPLNAKVVQTAKIIP 240

Query: 245 VIIVTEND--DPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAV 298
             ++ + +       +A  +  +++   +  +       +L +L  RG+ S+L+EGG   
Sbjct: 241 TWVICDVNFSKKSKKIALEQYGVSVYSVEVSNGYMPPLTILQLLYQRGINSVLLEGGVKT 300

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
              F+N+  VD +I + + +++G+  I +P    YL + F  V    FG D   ++  K 
Sbjct: 301 GEIFLNAGCVDHLICFYAPVILGKDRIKAPHFGNYLSQ-FHEVETRMFGKDRFYKWRRKT 359

Query: 359 LCLQEL 364
           LC QEL
Sbjct: 360 LCSQEL 365


>gi|144897824|emb|CAM74688.1| Riboflavin biosynthesis protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 370

 Score =  269 bits (688), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 149/362 (41%), Positives = 217/362 (59%), Gaps = 10/362 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S  D   M AAL  ++  +G    NP+V C+IV DG V+GRG T  GG PHAE +AL  
Sbjct: 6   ISDGDRAHMRAALALAKRGLGNVWPNPAVGCVIVADGRVVGRGWTQPGGRPHAETEALAM 65

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  ARG TAYVTLEPCSH+G++PPCA+ ++  GIRRVVV + DPD RV+GRG+  L   
Sbjct: 66  AGALARGGTAYVTLEPCSHHGKTPPCAEALVAAGIRRVVVAIQDPDPRVAGRGIALLQAA 125

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +V  +M  E       +L++    R  +T+K+A + D  I   G  S  ITG  ++ 
Sbjct: 126 GLSVVTGVMAEEAAELNAGFLSKVTRGRPLVTVKLATTLDGRIATHGGESRWITGAAARQ 185

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
             HLLRA++DAI+VG GTVLADDPELTCRL GL E SP+RI++D   +L L SK++ TA 
Sbjct: 186 AGHLLRAETDAIMVGSGTVLADDPELTCRLPGLSERSPVRIVVDGRLRLPLTSKLVSTAN 245

Query: 242 -LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
            +A  ++  E  +     A+ +  ++++         DL + + +L   G+T +LVEGGA
Sbjct: 246 DVATWVLTQEGAEQDRREAYEESGVDVVELPANDQGLDLDQAMRVLAESGITRVLVEGGA 305

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG--YLEK--NFMCVRRDYFGSDVCL 352
            +  + +   LVD ++ +R+  V+G  G+P+ +  G  +L +   F CV     G+D+  
Sbjct: 306 HLTATLLRQGLVDRLVWFRAARVMGGDGLPAAVSFGVDHLSQMPGFECVDVRRIGADLVE 365

Query: 353 EY 354
            Y
Sbjct: 366 NY 367


>gi|319405760|emb|CBI79383.1| Riboflavin biosynthesis protein ribD [Bartonella sp. AR 15-3]
          Length = 374

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 154/368 (41%), Positives = 223/368 (60%), Gaps = 12/368 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPHAEVQALEE 62
           D RFM+AA+R +  H+GLT  NPSV  LIV++      ++G GVTA  G PHAEV+AL  
Sbjct: 7   DKRFMAAAIRLAERHIGLTGENPSVGALIVQNKETGSSIVGYGVTALRGRPHAEVKALLM 66

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  A GATAYVTLEPCSHYG++ PC   +I  GI RVV+ + DPD RV G G+  L   
Sbjct: 67  AGPLAYGATAYVTLEPCSHYGKTSPCVNALINAGITRVVIALSDPDQRVYGCGITLLRAA 126

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI + + ++  E    L AYL  +  +R  +TLK+A+S DN IG  G  SV I+G IS+ 
Sbjct: 127 GIEVTEGVLAEEAFETLSAYLCVKKLQRCEVTLKMAISADNGIGKKGKSSVGISGEISRA 186

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           Q H+LRAQ++ I+VGIGT+LADDP+L CRL GL   SP+R+ILD   ++ LD+K+++TA 
Sbjct: 187 QTHILRAQNNVIMVGIGTILADDPQLDCRLPGLGMRSPIRVILDKDLRIPLDAKVVQTAA 246

Query: 242 LAPVIIV--TENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGG 295
             P  ++  T        +A  +  ++I   D  +       +L +L  R + S+L+EGG
Sbjct: 247 NIPTWVICGTVLSKKRKKIALEQYGVSICSVDTNNNVISPFTILQLLYQRKINSVLLEGG 306

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           A     F+++  VD +I + + I++G+  I +P  + YL + F  +     G+D   ++ 
Sbjct: 307 AKTGEIFLDAGCVDCLICFYAPIILGKDRIKAPHFQSYLSE-FNEIEMRMLGNDRLCKWR 365

Query: 356 GKNLCLQE 363
            K LC +E
Sbjct: 366 RKILCSRE 373


>gi|6572106|emb|CAB63090.1| riboflavin-specific deaminase / reductase [Bartonella henselae str.
           Houston-1]
          Length = 363

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 147/364 (40%), Positives = 223/364 (61%), Gaps = 13/364 (3%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIVKDG-----IVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           AA+R +  HVGLT  NPSV  +I ++       ++G GVTA  G PHAEVQAL+ AG  A
Sbjct: 1   AAIRLAERHVGLTGENPSVGTIIARNDENVGVYIVGYGVTAIQGRPHAEVQALQMAGSLA 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
            GATAYVTLEPCSHYG++ PC   +++ GI RVV+ + D D RV+GRG+  L   GI ++
Sbjct: 61  HGATAYVTLEPCSHYGKTSPCVNTLLKSGISRVVIALTDLDKRVNGRGIALLRAAGIEVI 120

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
           + ++  E    L  Y   + ++R  +TLK+A+S DN +G  G G + I+G  S  Q H+L
Sbjct: 121 EGVLAKEAFESLCNYWCIRKQQRCAVTLKMAISADNGVGKKGQGGIKISGTTSHAQTHIL 180

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RAQ++AILVGIGT+LADDP+L CRL G++ HSP+RIILD +  + L++K+++TA + P  
Sbjct: 181 RAQNNAILVGIGTILADDPQLNCRLPGMEMHSPIRIILDANLCIPLNAKVVQTAKIIPTW 240

Query: 247 IVTEND--DPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAH 300
           ++ + +       +A  +  +++   +  +       +L +L  RG+ S+L+EGG     
Sbjct: 241 VICDVNFSKKSKKIALEQYGVSVYSVEVSNGYMPPLTILQLLYQRGINSVLLEGGVKTGE 300

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
            F+N+  VD +I + + +++G+  I +P    YL + F  V    FG D   ++  K LC
Sbjct: 301 IFLNAGCVDHLICFYAPVILGKDRIKAPHFGNYLSQ-FHEVETRMFGKDRFYKWRRKTLC 359

Query: 361 LQEL 364
            QEL
Sbjct: 360 SQEL 363


>gi|121602090|ref|YP_988935.1| riboflavin biosynthesis protein RibD [Bartonella bacilliformis
           KC583]
 gi|120614267|gb|ABM44868.1| riboflavin biosynthesis protein RibD [Bartonella bacilliformis
           KC583]
          Length = 374

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 156/375 (41%), Positives = 224/375 (59%), Gaps = 12/375 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAE 56
           M   + D RFM+AA+R +  HVGLT+ NPSV  LIV++      ++G GVTA  G PHAE
Sbjct: 1   MNKKAQDCRFMAAAIRLAERHVGLTNENPSVGALIVRNDSTGPFIVGYGVTALRGRPHAE 60

Query: 57  VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           VQAL+ AG  ++GATAY+TLEPC HYG++ PC   +I+ GI RVV+ + DPD RV GR +
Sbjct: 61  VQALQMAGPLSKGATAYITLEPCVHYGKTSPCVDSLIDAGIARVVIALIDPDERVCGRSI 120

Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
             L    I +V  ++E E    L AYL  +  KR  +TLK+A+S DN +G  G G V I+
Sbjct: 121 ALLQAADIEVVKGVLEKESSEMLSAYLCTKKLKRCEVTLKMAISADNGVGKKGQGGVKIS 180

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
           G  S    H+LRAQ +AI+VGI T+LADDP+LTCRL GL+  SP+R+ILD   ++ +D+K
Sbjct: 181 GATSHTYTHILRAQHNAIMVGIRTILADDPQLTCRLQGLEMRSPIRVILDKDLRIPMDAK 240

Query: 236 IIKTALLAPVIIVTE----NDDPVLALAFRKKNINIIYCDCRDLKKL--LTILVGRGVTS 289
           +I+TA   P  ++ +    N    + L      ++ I      ++ L  L +L   G+ S
Sbjct: 241 VIQTATQVPTWVICDATLSNQSKKMKLEQYGVCVHSIEISNNFMQPLAILQLLCQLGINS 300

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           +L+EGGA     F+N+  VD +I + + +++GE  I +P  E YL + F  +      +D
Sbjct: 301 VLLEGGAETGEKFLNAGCVDHLICFYASVILGENRIKAPYFETYLSE-FNEIETKMLEND 359

Query: 350 VCLEYIGKNLCLQEL 364
               +  K LC Q L
Sbjct: 360 RLRRWRRKILCSQGL 374


>gi|86749753|ref|YP_486249.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris
           HaA2]
 gi|86572781|gb|ABD07338.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Rhodopseudomonas palustris HaA2]
          Length = 389

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 160/327 (48%), Positives = 207/327 (63%), Gaps = 8/327 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM  AL   R  +G T TNP+V  ++VKDG+++GRG T  GG PHAEV+AL  AGE 
Sbjct: 27  DRRFMQLALTLGRRGLGRTGTNPAVGAVLVKDGVIVGRGWTQDGGRPHAEVEALARAGEA 86

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGAT YVTLEPCSH+GRSPPCA  II  G+ RVV  ++DP+  V G+G   L   GI V
Sbjct: 87  ARGATLYVTLEPCSHHGRSPPCADAIIAAGVARVVSAIEDPNPLVGGQGHGKLRAAGIAV 146

Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  +  E     HA +L R  E+R H+ LK+AVS D+ I   G   V ITG  ++ +VHL
Sbjct: 147 ELGVCVEEAARDHAGHLLRVREQRPHVVLKLAVSTDDKIAADGRKPVAITGEAARARVHL 206

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQSDAILVGIGTVLADDPELT RL G+ + SP+R++LD   ++  DSK++ +A   P+
Sbjct: 207 LRAQSDAILVGIGTVLADDPELTVRLPGMAKQSPIRVVLDRALRIPGDSKLVHSARATPL 266

Query: 246 -IIVTENDDPVLALAFRKKNINIIYC-DCR-----DLKKLLTILVGRGVTSLLVEGGAAV 298
            ++ +E  +P  A         +I   DC+     D+  +L  L  +GVT LLVEGGA  
Sbjct: 267 WLMASEIAEPAAAARLGAAGAEVIRAPDCQRTPGLDIAAVLAALSEKGVTRLLVEGGARA 326

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGI 325
           A +F+ S LVD I L R    IGE G+
Sbjct: 327 ARAFVESGLVDEIWLLRGDKAIGEDGV 353


>gi|49474161|ref|YP_032203.1| riboflavin biosynthesis protein ribD [Bartonella quintana str.
           Toulouse]
 gi|49239665|emb|CAF26036.1| Riboflavin biosynthesis protein ribD [Bartonella quintana str.
           Toulouse]
          Length = 365

 Score =  266 bits (679), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 151/373 (40%), Positives = 217/373 (58%), Gaps = 27/373 (7%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDG-----IVIGRGVTAYGGCPHAEVQALEEAGE 65
           M+AA+R +  H+GLT  NPSV  +I ++       ++G GVTA  G PHAEVQAL  AG 
Sbjct: 1   MAAAIRLAERHIGLTGENPSVGTIIARNDDSRGRCIVGYGVTAIHGRPHAEVQALHMAGP 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            ARGATAYVTLEPCSHYG++ PC   +I  GI RVVV + D D RV GRG+  L   GI 
Sbjct: 61  LARGATAYVTLEPCSHYGKTLPCVNALINSGISRVVVALTDLDKRVDGRGIALLRAAGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V+ ++  E    L  Y   +  +R  +T K+A+S DN +G  G G++ I+G  S    H
Sbjct: 121 VVEGVLAEEAFEALCTYWCIRKLQRCAVTFKMAISADNGVGKKGQGAIKISGMTSHTHTH 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
           +LRAQ++AILVG+GT+L DDP+L+CRL G++  SP+RIILD    + LD+K+++TA   P
Sbjct: 181 ILRAQNNAILVGVGTILVDDPQLSCRLPGMERRSPIRIILDADLCIPLDAKVVQTAKTIP 240

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDC-------------RDLKKLLTILVGRGVTSLL 291
             ++ +       + F KK+       C                  +L +L  RG+ S+L
Sbjct: 241 TWVICD-------VNFSKKSKKSALEQCGVSVYSVEMSNGYMQPLAILRLLYQRGINSVL 293

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           +EGG      F+N+  VD +I + + +++G+  I +P    YL + F  V    FG+D C
Sbjct: 294 LEGGVKTGEKFLNAGCVDHLICFYAPVILGKDRIEAPHFGNYLSQ-FYEVETRMFGNDRC 352

Query: 352 LEYIGKNLCLQEL 364
            ++  K LC QEL
Sbjct: 353 YKWRRKTLCSQEL 365


>gi|209884995|ref|YP_002288852.1| riboflavin biosynthesis protein RibD [Oligotropha carboxidovorans
           OM5]
 gi|209873191|gb|ACI92987.1| riboflavin biosynthesis protein RibD [Oligotropha carboxidovorans
           OM5]
          Length = 380

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 151/329 (45%), Positives = 196/329 (59%), Gaps = 8/329 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM  AL   R   G T  NP+V  ++VKDG+++GRG T  GG PHAE QAL+ AGE 
Sbjct: 15  DHRFMQLALALGRRGQGATWPNPAVGAVVVKDGVILGRGWTQPGGRPHAEPQALQRAGEA 74

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGAT YVTLEPCSHYG+SPPC   II  GI RVV  ++DP+ +V+G+G   L   GI V
Sbjct: 75  ARGATLYVTLEPCSHYGKSPPCVDAIIVSGIARVVSAIEDPNPQVAGQGHVRLRDAGITV 134

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  +   E       +  R  E R H+TLK+AVS D  I  AG   V ITG  +  +VHL
Sbjct: 135 DVGLCRDEAAQAHSGHFLRVREGRPHVTLKLAVSADGKIAAAGGKPVRITGEAANARVHL 194

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRA+SDAIL+GIGT LADDP LTCRL G++  SP+R++LD   +L   S+++ +A   P+
Sbjct: 195 LRAESDAILIGIGTALADDPLLTCRLPGMEHRSPVRVVLDRALRLPGASRLVHSARQTPL 254

Query: 246 IIVTENDDPVLALAFRKKNINIIY-------CDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
            I+        A A        ++           DL  +L  L  + +T LLVEGGA V
Sbjct: 255 WIIAAETAEAAAAARLGVAGAHLFRLPVEDRAAGLDLNAVLRTLSEQDITRLLVEGGAKV 314

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           A SF+ +RLVD   L +    IG+ G+P+
Sbjct: 315 ASSFLAARLVDEFWLLQGAKSIGDDGLPA 343


>gi|90424160|ref|YP_532530.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris
           BisB18]
 gi|90106174|gb|ABD88211.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Rhodopseudomonas palustris BisB18]
          Length = 383

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 148/329 (44%), Positives = 202/329 (61%), Gaps = 8/329 (2%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D RFM  AL   R   G T+ NP+V  +IVKDG+++GRG T  GG PHAE++AL  AG
Sbjct: 19  AADLRFMQLALSLGRRGQGRTAPNPAVGAVIVKDGVIVGRGWTQPGGRPHAEIEALNRAG 78

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
             ARGAT YVTLEPCSH+G++PPCA  +I  G+ RVV  ++DP+ +V+G+G   L   GI
Sbjct: 79  LAARGATLYVTLEPCSHHGKTPPCADAVIAAGLARVVSAIEDPNPQVAGQGHARLRAAGI 138

Query: 125 IVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            VD  + +      HA   R+V + R H+ LK+AVS D+ I         ITG  ++ +V
Sbjct: 139 RVDVGLGAAEAAHDHAGHFRRVRDGRPHVILKLAVSSDDKIAATPGQPTAITGEAARARV 198

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           HLLRAQ DAIL+GI T LADDP LTCRL G+++ SP+R++LD   +L  DS+++ +A   
Sbjct: 199 HLLRAQCDAILIGIRTALADDPLLTCRLPGMEKRSPVRVVLDRALRLPGDSRLVHSARST 258

Query: 244 PVIIVTENDDPVLALAFRKKN----INIIYCDCR---DLKKLLTILVGRGVTSLLVEGGA 296
           P+ ++        A A         I++  CD     DL  +L  L G G+T LLVEGGA
Sbjct: 259 PLWLLASEIAEAAAAAKLGAAGAQIIHVADCDAMPGLDLPAVLQALAGNGITRLLVEGGA 318

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGI 325
            VA S + + LVD + L R  + IGEGG+
Sbjct: 319 RVASSLVAADLVDEVWLLRGAMTIGEGGV 347


>gi|146341344|ref|YP_001206392.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Bradyrhizobium sp. ORS278]
 gi|146194150|emb|CAL78171.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Bradyrhizobium sp. ORS278]
          Length = 383

 Score =  263 bits (672), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 147/327 (44%), Positives = 199/327 (60%), Gaps = 8/327 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM  AL   R   G T  NP+V  ++VKDG+++GRG T  GG PHAE +AL  AGE 
Sbjct: 21  DRRFMQLALTLGRRGQGRTWPNPAVGAVVVKDGVIVGRGWTQPGGRPHAEPEALRRAGEA 80

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YVTLEPCSH+G+SPPCA  +I  GI RVV  V+DP+  V+ +G   L   GI V
Sbjct: 81  AKGATLYVTLEPCSHFGKSPPCADAVIAAGISRVVSAVEDPNPEVAAQGHAKLRAAGIQV 140

Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  + S      HA +  R  + R  + LK+AVS D+ I  AG   V ITG  ++ +VHL
Sbjct: 141 EVGLCSADAKRDHAGHFRRIRDGRPQVILKLAVSADDKIAAAGSKPVAITGEAARTRVHL 200

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQSDAIL+G+ T +ADDP LTCRL G++  SP+R++LDP  +L   S++I++A   P+
Sbjct: 201 LRAQSDAILIGVRTAIADDPLLTCRLPGMEPRSPVRVVLDPMLRLPSASRLIQSARTTPL 260

Query: 246 -IIVTENDDPVLALAFRKKNINII----YCDCRDLKK--LLTILVGRGVTSLLVEGGAAV 298
            ++ +E  +P  A         +I      D   L+   +L  L  +G+T L++EGG+ V
Sbjct: 261 WLVASEVAEPATATRLGAAGAQVIRVPPQADPSALEPPAVLKALAEKGITRLMIEGGSRV 320

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGI 325
           A SF+ S LVD I L R    IG  GI
Sbjct: 321 ASSFMQSGLVDEIWLLRGPREIGADGI 347


>gi|92117361|ref|YP_577090.1| riboflavin biosynthesis protein RibD [Nitrobacter hamburgensis X14]
 gi|91800255|gb|ABE62630.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Nitrobacter hamburgensis X14]
          Length = 383

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 149/330 (45%), Positives = 203/330 (61%), Gaps = 10/330 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D RFM  AL   R  +G ++ NP+V  +IVKD +++GRG T  GG PHAE +AL  AG
Sbjct: 19  AVDLRFMQLALALGRRSLGASAPNPAVGAVIVKDDVIVGRGWTQPGGRPHAEAEALRRAG 78

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGAT YVTLEPCSH G++PPCA  +I  GI RVV  ++DP   V+G+G   L   GI
Sbjct: 79  EAARGATLYVTLEPCSHVGKTPPCADAVIAAGITRVVSAIEDPTPEVAGQGHARLRAAGI 138

Query: 125 IVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            VD  + +      HA   R++ +KR H+ LK+AVS D  I  AG   V ITG  +K +V
Sbjct: 139 SVDVGLCAAEAAHHHAGHFRRIRDKRPHVILKLAVSSDGRIAAAGGVPVAITGEAAKARV 198

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           HLLRAQ +AILVGIGTVLAD+P LTCRL G++  SP+R++LD   ++  DS+++++A   
Sbjct: 199 HLLRAQCNAILVGIGTVLADNPLLTCRLPGMEARSPLRVVLDHALRIPHDSRLVRSARET 258

Query: 244 PVIIVTEN--DDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGG 295
           P+ ++  +    PV A+      + ++           DL  +L  L  RGVT L+VEGG
Sbjct: 259 PLWVMASDLAQAPV-AMKLGAAGVQVLRVPVAAGAPGLDLAAILRALSERGVTRLVVEGG 317

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           A VA SF+ + LVD   L R    IG+ G+
Sbjct: 318 ARVASSFVAAGLVDEAWLLRGPDPIGDDGV 347


>gi|307945264|ref|ZP_07660600.1| riboflavin biosynthesis protein RibD [Roseibium sp. TrichSKD4]
 gi|307771137|gb|EFO30362.1| riboflavin biosynthesis protein RibD [Roseibium sp. TrichSKD4]
          Length = 376

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 154/358 (43%), Positives = 219/358 (61%), Gaps = 15/358 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-----IVIGRGVTAYGGCPHAEVQALE 61
           D RFM+AA R++R  +G    NP VA LIV++      +V+GRG T+  G PHAEV AL 
Sbjct: 9   DLRFMAAAERYARRGLGEVWPNPPVAALIVRENENGQHVVVGRGRTSKPGGPHAEVNALT 68

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG  A+GAT YVTLEPCSHYGR+PPC+  ++E GI+RVV+ + DP+ RV+GRG++ L +
Sbjct: 69  MAGTAAKGATCYVTLEPCSHYGRTPPCSVALVEAGIKRVVIGMRDPNPRVAGRGIKMLEE 128

Query: 122 KGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            G+ V+  +       L++ ++ R  + R  + LK+A+S+D  IG  G G V I+  +S 
Sbjct: 129 AGVEVEVGVHEVACQELYSGFIMRITQHRPKVLLKLAISKDGFIGKKGEGQVRISNPLSM 188

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             VH  R+  DAI+VGIGT LADDP+LTCRL G+ E SP+R+I+D   +L L SK++ TA
Sbjct: 189 RHVHGFRSTYDAIMVGIGTALADDPQLTCRLPGMAERSPVRVIIDSDARLPLASKLVMTA 248

Query: 241 LLAPVIIVTENDDPVLAL-AFRKKNINII---YCDCRDLKKLLT-ILVGRGVTSLLVEGG 295
              PV +V  +  P   + A  K  + II     DC     ++T  L  RG+T L+VEGG
Sbjct: 249 AEVPVWLVCSSTAPAERIEALSKAGVLIIRVPTTDCGIEPSVVTSALSTRGITRLMVEGG 308

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
           + +A +F+ + LVD + +    I +GEGGIP      LE+   + +F  V     GSD
Sbjct: 309 SRIASAFLKAGLVDDMCIVTGDIEVGEGGIPVLHDLRLEDVVADPSFAKVEAGVIGSD 366


>gi|85715452|ref|ZP_01046433.1| Riboflavin biosynthesis protein RibD [Nitrobacter sp. Nb-311A]
 gi|85697647|gb|EAQ35523.1| Riboflavin biosynthesis protein RibD [Nitrobacter sp. Nb-311A]
          Length = 383

 Score =  259 bits (662), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 147/329 (44%), Positives = 201/329 (61%), Gaps = 8/329 (2%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D  FM  AL   R  +G ++ NP+V  +IVK+G+++GRG T  GG PHAE +AL  AG
Sbjct: 19  AADLHFMQLALALGRRSLGASAPNPAVGAVIVKNGVIVGRGWTQPGGRPHAEAEALRRAG 78

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGAT YVTLEPCSH G++PPCA  +I  GI RVV  ++DP   V+G+G   L   GI
Sbjct: 79  EAARGATLYVTLEPCSHVGKTPPCADAVIAAGITRVVSAIEDPTPEVAGKGHARLRAAGI 138

Query: 125 IVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V+  + ++     HA +L R  + R HI LK+A+S D MI  AG   V ITG  +K +V
Sbjct: 139 SVEVGLCADEAAHHHAGHLRRVRDGRPHIILKLAMSSDGMIAAAGGIPVAITGEAAKARV 198

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           HLLRAQ  AILVGIGTVLADDP LTCRL G++  SP R++LD   ++   S+++++A   
Sbjct: 199 HLLRAQCSAILVGIGTVLADDPMLTCRLPGMETRSPPRVVLDHALRIPESSRLVQSAHET 258

Query: 244 PVIIVT-ENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGGA 296
           P+ I+T E  +   A+      + ++           DL ++L  L  RGVT L+VEGGA
Sbjct: 259 PLWIMTSEFAEASRAMKLGAAGVQVMRVPVAAEAPGLDLLEVLRALSERGVTRLIVEGGA 318

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGI 325
            +A SF+ + LVD   L      IG+ G+
Sbjct: 319 RIAASFVAAALVDEAWLLSGPDPIGDDGV 347


>gi|298291639|ref|YP_003693578.1| riboflavin biosynthesis protein RibD [Starkeya novella DSM 506]
 gi|296928150|gb|ADH88959.1| riboflavin biosynthesis protein RibD [Starkeya novella DSM 506]
          Length = 370

 Score =  258 bits (659), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 148/369 (40%), Positives = 215/369 (58%), Gaps = 18/369 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAE 56
           M  +  D   M+AAL   R  +G T  NP+V  L+V++     +V+GRG T+ GG PHAE
Sbjct: 1   MTKTIHDEALMAAALSVGRRELGHTWPNPAVGALVVRETGGAPVVLGRGWTSKGGRPHAE 60

Query: 57  VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            QAL +AGE ARGAT YVTLEPCSH+G +PPC   +   G+ RVV  ++DPD RV+GRG 
Sbjct: 61  PQALAQAGEGARGATLYVTLEPCSHHGLTPPCVDAVRASGVARVVAAIEDPDFRVAGRGF 120

Query: 117 QWLSQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
             L + GI V+  + +      HA ++ R  E R H+ LK+AVS D  +G+AG     IT
Sbjct: 121 SLLREAGIDVEVGVGAPEARLAHAGHIRRVTEGRPHVMLKLAVSADGKVGLAGRRPAAIT 180

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
           G +++ +VHL+R+  DA+L GIGTVLADDP LTCRL G+++ SP+RI+LD   +L   S 
Sbjct: 181 GEVARGRVHLMRSIYDAVLTGIGTVLADDPLLTCRLPGMEDRSPLRIVLDADLRLPSTSA 240

Query: 236 IIKTALLAPVIIVTENDDPV------LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
           + ++   AP+ I+   D PV      +A+      +        DL + L +L  RG+T 
Sbjct: 241 LARSLGTAPLWIIAAEDAPVAPEEMLVAMGVEVMRVRRRPDGGIDLNEALKLLALRGITR 300

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           L+VE G  V+ + +   LVD   ++ + + +GEG + +      LE   +    DY  SD
Sbjct: 301 LMVEAGPRVSTAVLREGLVDEANIFLAPVQLGEGALDA------LEGLPLSALDDYL-SD 353

Query: 350 VCLEYIGKN 358
             LE+ G++
Sbjct: 354 AELEWHGED 362


>gi|91977144|ref|YP_569803.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris
           BisB5]
 gi|91683600|gb|ABE39902.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Rhodopseudomonas palustris BisB5]
          Length = 396

 Score =  258 bits (658), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 158/333 (47%), Positives = 207/333 (62%), Gaps = 14/333 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM  AL   R  +G T+TNP+V  +IVKDG+++GRG T  GG PHAEV+AL  AGE 
Sbjct: 28  DLRFMQLALTLGRRGLGRTATNPAVGAVIVKDGVILGRGWTEVGGRPHAEVEALARAGEA 87

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGAT YVTLEPCSH GRSPPCA  +I  GI RVV  ++DP+  V+G+G   L   GI V
Sbjct: 88  ARGATLYVTLEPCSHVGRSPPCADAVIAAGISRVVSAIEDPNPLVAGQGHDKLRAAGIAV 147

Query: 127 DRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  + +      HA   R+V ++R H+ LK+AVS D+ I  AG   V ITG  ++ +VHL
Sbjct: 148 DVGLCAAEAARDHAGHFRRVRDRRPHVVLKLAVSTDDKIARAGHKPVAITGEETRARVHL 207

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQSDAILVGIGTVLADDPELT RL G+ + SP+R++LDP  ++   SK++ +A   P+
Sbjct: 208 LRAQSDAILVGIGTVLADDPELTVRLPGMAKQSPIRVVLDPSLRIPGGSKLVHSARQTPL 267

Query: 246 -IIVTENDDPVLALAFRKKNINIIYCDCR------------DLKKLLTILVGRGVTSLLV 292
            +I +E  +   A        ++I+   R            DL  +L  L  +GVT LLV
Sbjct: 268 WLIASEVAEAAAATRLGAAGAHVIHVADRPSVTDGQSRPGLDLAAVLATLSEKGVTRLLV 327

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           EGGA VA + ++  L D I L R +  IG  G+
Sbjct: 328 EGGARVASALVSENLADEIWLLRGETTIGADGV 360


>gi|304391942|ref|ZP_07373884.1| riboflavin biosynthesis protein RibD [Ahrensia sp. R2A130]
 gi|303296171|gb|EFL90529.1| riboflavin biosynthesis protein RibD [Ahrensia sp. R2A130]
          Length = 367

 Score =  256 bits (654), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 149/347 (42%), Positives = 203/347 (58%), Gaps = 8/347 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           A +M A LR +R H GLT TNPSV  L+VKDG V+GRG+TA GG PHAE  AL++AG  A
Sbjct: 16  AEWMGACLRLARRHRGLTGTNPSVGTLLVKDGRVVGRGITAKGGRPHAERVALDQAGPNA 75

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            G+ AYVTLEPC+H+G +PPCAQ +I  G+  V     DPD RV G+G   L +  I V 
Sbjct: 76  VGSIAYVTLEPCAHHGATPPCAQALINAGVAEVHTAYIDPDHRVDGKGHAMLREAEIAVH 135

Query: 128 RMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
               SE     +  YLTR+   R  +TLK+AVS+D M+G  G   V ITG +++  VH +
Sbjct: 136 AGQGSEIAGSDMRGYLTRKRLGRPMVTLKLAVSRDGMLGRTGE-EVSITGPLARAMVHRM 194

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA+ DAI VG GTV ADDP+LTCRL+GL+  SP R I D    L+  S+++ +A   PV 
Sbjct: 195 RAEHDAIAVGRGTVEADDPDLTCRLSGLEARSPERFIFDSAGVLTETSRLVASARTVPVH 254

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           +++    P L        +     +  +    L ++L  L  RG++SL++EGGA +A SF
Sbjct: 255 LISTL--PGLPEHLLASGVRHFAAEAENGHIALPEVLDDLGARGISSLMLEGGAQLASSF 312

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           +N+ LVD I  +     +G  GI SP+    +   F   R    G +
Sbjct: 313 LNAGLVDEIAFFVGAKDVGPDGIASPITLATIPAEFNAGRTLQLGPN 359


>gi|148255996|ref|YP_001240581.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Bradyrhizobium sp. BTAi1]
 gi|146408169|gb|ABQ36675.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bradyrhizobium
           sp. BTAi1]
          Length = 383

 Score =  256 bits (654), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 143/327 (43%), Positives = 199/327 (60%), Gaps = 8/327 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM  AL   R   G T  NP+V  ++VKDG+++GRG T  GG PHAE +AL  AG  
Sbjct: 21  DRRFMQLALALGRRGQGRTWPNPAVGAVVVKDGVIVGRGWTQPGGRPHAEPEALRRAGAA 80

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            +GAT YV+LEPCSH+G+SPPCA  +I  GI RVV  ++DP+  VSG+G   L   GI V
Sbjct: 81  TKGATLYVSLEPCSHFGKSPPCADAVIAAGISRVVSAIEDPNPEVSGQGHARLRAAGIQV 140

Query: 127 DRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  + S      HA   R++ + R H+ LK+AVS D+ I  AG   V ITG  ++ +VHL
Sbjct: 141 EVGLCSADAKRDHAGFFRRIRDSRPHVILKLAVSADDKIAAAGNKPVAITGEAARTRVHL 200

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQSDAIL+G+ T +ADDP LTCRL G++  SP+R++LDP  +L + S+++++A   P+
Sbjct: 201 LRAQSDAILIGVRTAIADDPLLTCRLPGMEARSPVRVVLDPMLRLPMTSRLVQSARTTPL 260

Query: 246 -IIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGGAAV 298
            +I +   +P  A         +I    +      +   +L  L  +G+T L++EGG+ V
Sbjct: 261 WMIASAVAEPAAATKLGAAGAQVIRVPPQVEPSVLEPPAVLKALADKGITRLMIEGGSRV 320

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGI 325
           A SF+ S LVD I L R    IG  GI
Sbjct: 321 ASSFMQSGLVDEIWLLRGAGEIGADGI 347


>gi|182678211|ref|YP_001832357.1| riboflavin biosynthesis protein RibD [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634094|gb|ACB94868.1| riboflavin biosynthesis protein RibD [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 401

 Score =  255 bits (652), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 144/345 (41%), Positives = 199/345 (57%), Gaps = 23/345 (6%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P S  D  +M+ AL  S+  +G T+ NPSV  +IVKDG ++GRG T  GG PHAE +AL 
Sbjct: 19  PDSETDTHYMAEALALSQQGLGRTAPNPSVGAIIVKDGKIVGRGWTQPGGRPHAETEALA 78

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           EAG+ ARGAT YVTLEPCSH+G +PPCA  II  G+ RVV  ++DPD RVSGRG + L +
Sbjct: 79  EAGDAARGATLYVTLEPCSHFGVTPPCASAIIAAGVARVVCALEDPDPRVSGRGYRMLRE 138

Query: 122 KGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC--GSVP---IT 175
            GI V   ++E+E +     ++ R   +R  +TLK+A++ D  +       G  P   IT
Sbjct: 139 AGIAVTHGVLEAEARRANLGHIRRVQAQRPMVTLKLAMTADGFVASTAPREGQAPRLKIT 198

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----------PMRIILD 225
           G  +   VH +RAQ DAI++GIGT LADDP LT RL+G +E            P RI+LD
Sbjct: 199 GAAANEHVHRMRAQHDAIMIGIGTALADDPMLTVRLSGQEEMGKAEMGKVAARPRRIVLD 258

Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA-FRKKNINIIYCDCR------DLKKL 278
            H +L L S +++TA   P +++T +D    A+A  R+ ++ +   +        DL   
Sbjct: 259 SHLRLPLQSHLVQTAADYPTLVLTRDDASAEAMARLREASVVVETLESAQSTPSLDLSAA 318

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           L  L   G+T +  EGG  VA S I     D +IL  S  ++G G
Sbjct: 319 LQRLASLGLTRIFSEGGPRVAESLIGQHAADEVILLESPAILGAG 363


>gi|154248198|ref|YP_001419156.1| riboflavin biosynthesis protein RibD [Xanthobacter autotrophicus
           Py2]
 gi|154162283|gb|ABS69499.1| riboflavin biosynthesis protein RibD [Xanthobacter autotrophicus
           Py2]
          Length = 383

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 149/366 (40%), Positives = 217/366 (59%), Gaps = 18/366 (4%)

Query: 2   PVSSF--DARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGI--VIGRGVTAYGGCPHA 55
           PV+S   D RFM+ AL+  +  +G T  NPSV  ++V+  DG   ++G   TA  G PHA
Sbjct: 10  PVTSPEDDERFMAEALKVGQSGLGRTWPNPSVGAVVVQHVDGRPHIVGAAATAPTGRPHA 69

Query: 56  EVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           E  AL +AGE ARG+T YVTLEPCSH+GR+PPCA  +I  G+RRVV  ++DPD RV GRG
Sbjct: 70  EPIALAQAGEAARGSTLYVTLEPCSHHGRTPPCAGAVIAAGVRRVVAAIEDPDHRVKGRG 129

Query: 116 LQWLSQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           +  L   GI V   + +E  +  HA ++ R  E R H+ LK+AVS D    +AG     +
Sbjct: 130 VARLRAAGIWVTVGVGAEQALADHAGHIRRVTEGRPHVLLKMAVSADGKAALAGPRPAVV 189

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           TG  ++ + HL+RA +DAILVG+GTV ADDP LTCRL G ++ SP+R++LD    + L+S
Sbjct: 190 TGPEARARAHLMRAHADAILVGLGTVTADDPMLTCRLEGHEDRSPVRLVLDSGLDIPLES 249

Query: 235 KIIKTALLAPVIIVTENDDPV-LALAFRKKNINIIYC-----DCR-DLKKLLTILVGRGV 287
            +++TA   PV ++   D P   A A  ++ + ++       + R  L  +L +L   G+
Sbjct: 250 ALVRTASDVPVWVIAAEDAPAERAAALMERGVEVLRAPRGGIEGRLHLPAVLKLLGLLGI 309

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRR 343
           T L+VEGG A A +F+ + LVD + ++ S +++G     +    PL   +    F  V R
Sbjct: 310 TRLMVEGGPATAAAFLEAGLVDEVAVFHSPVLLGPDAYHALAGRPLGRLFAPVGFAEVER 369

Query: 344 DYFGSD 349
              G+D
Sbjct: 370 AELGAD 375


>gi|75675917|ref|YP_318338.1| riboflavin biosynthesis protein RibD [Nitrobacter winogradskyi
           Nb-255]
 gi|74420787|gb|ABA04986.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Nitrobacter
           winogradskyi Nb-255]
          Length = 387

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 148/329 (44%), Positives = 198/329 (60%), Gaps = 8/329 (2%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D  FM  AL   R  +G ++ NP+V  +IVKDG+++GRG T  GG PHAE +AL  AG
Sbjct: 19  TVDLHFMQLALALGRRSLGASAPNPAVGAVIVKDGVIVGRGWTQPGGRPHAEAEALRRAG 78

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGAT YVTLEPCSH G++PPCA  +I  GI RVV  ++DP   VSG+G   L   G+
Sbjct: 79  EAARGATLYVTLEPCSHVGKTPPCADAVIAAGITRVVSAIEDPTPEVSGQGHARLRAAGV 138

Query: 125 IVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V+  + +      HA   R+V ++R HI LK+AVS D  I  AG   V ITG  ++ + 
Sbjct: 139 AVEIGLCAAEAAHHHAGHFRRVRDRRPHIILKLAVSSDGKIAAAGGVPVAITGEAARARA 198

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           HLLRAQ  AILVGIGTVLADDP LTCRL G++  SP+R++LD   ++   S+++++A   
Sbjct: 199 HLLRAQCSAILVGIGTVLADDPLLTCRLPGMETRSPLRVVLDQALRIPESSRLVQSARET 258

Query: 244 PVIIVT-ENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGGA 296
           P+ I+T E  +   A+        ++           DL  +L  L   GVT L+VEGGA
Sbjct: 259 PLWIMTSEFAEASRAMKLGAAGARVMRVPGAAGAPGLDLVAVLRALSESGVTRLVVEGGA 318

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGI 325
            VA SFI + LVD   L R    IG+ G+
Sbjct: 319 RVAASFIAAALVDEAWLLRGPDPIGDDGV 347


>gi|299135084|ref|ZP_07028275.1| riboflavin biosynthesis protein RibD [Afipia sp. 1NLS2]
 gi|298590061|gb|EFI50265.1| riboflavin biosynthesis protein RibD [Afipia sp. 1NLS2]
          Length = 377

 Score =  252 bits (644), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 155/366 (42%), Positives = 212/366 (57%), Gaps = 25/366 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM  AL   R   G T  NP+V  ++VKDG+++GRG T  GG PHAE  AL+ AG+ 
Sbjct: 13  DHRFMQLALALGRRGQGRTWPNPAVGAVVVKDGVILGRGWTQPGGRPHAEPVALQRAGKA 72

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YVTLEPCSH+G+SPPCA  II  GI RV+  ++DP+  V+G+G   L   GI V
Sbjct: 73  AKGATLYVTLEPCSHHGKSPPCADAIIAAGIARVMSAIEDPNPEVAGQGHARLRDAGIQV 132

Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  +  +     HA +  R  E+R H+TLK+AVS D  I  AG   V ITG  +  +VHL
Sbjct: 133 DVGLYRDEAARAHAGHFLRVREQRPHVTLKLAVSADGRIAAAGHKPVQITGEAANARVHL 192

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ+DAIL+GIGT +ADDP LTCRL G++  SP+R++LD   +LS +S++I +A   P+
Sbjct: 193 LRAQNDAILIGIGTAMADDPMLTCRLPGMEACSPVRVVLDRALRLSGNSRLIHSARATPL 252

Query: 246 IIVTENDDP-------------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
            ++                   V  LA     + +      DL+ +L  L  +G+T LLV
Sbjct: 253 WLIASETAEAAAATKLGAAGAHVFHLAVDDHQVGL------DLEAVLHTLSAQGITRLLV 306

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGS 348
           EGGA VA SF+ + LVD   L++    IG  G+ + L+   LE      ++    + FG 
Sbjct: 307 EGGAKVASSFLKAGLVDEFWLFQGMKNIGSDGL-AALDGQQLETAIASGWLADETERFGD 365

Query: 349 DVCLEY 354
           D    Y
Sbjct: 366 DRLTVY 371


>gi|209964642|ref|YP_002297557.1| riboflavin biosynthesis protein RibD [Rhodospirillum centenum SW]
 gi|209958108|gb|ACI98744.1| riboflavin biosynthesis protein RibD [Rhodospirillum centenum SW]
          Length = 379

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 142/332 (42%), Positives = 202/332 (60%), Gaps = 8/332 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M AAL  +   +G    NPSV C++V++G V+GRGVT  GG PH E +AL +A
Sbjct: 13  SDQDRAHMRAALTLAARGLGRVWPNPSVGCVLVREGRVVGRGVTGAGGRPHGETEALRQA 72

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE+ARGATAYV+LEPC+H+GR+PPC + ++  G+ RVVV  +DPD RVSG GL  L   G
Sbjct: 73  GEQARGATAYVSLEPCNHHGRTPPCTEALMAAGVARVVVACEDPDPRVSGGGLARLRAAG 132

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + +   ++E+E +     +  R  E R  +TLK+A S D  I      S  ITG +++  
Sbjct: 133 LEVASGLLEAEAQELNAGFFLRIREGRPLVTLKLATSLDGRIATRTGESRWITGPVARAW 192

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H LRA  DAILVGIGT LADDPELTCRL G+ + SP+RI+LD   +L L S++++TA  
Sbjct: 193 GHGLRASHDAILVGIGTALADDPELTCRLPGMADRSPVRIVLDSRLRLPLTSRLVRTADR 252

Query: 243 APVIIVTEND--DPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGG 295
            PV ++T  D  +P    AF    +++I  +        L + L  L  RG+T +L EGG
Sbjct: 253 TPVWLITRPDAAEPARMAAFADCGVDLIPVEPGPGGEIPLPQALRTLAARGITRVLAEGG 312

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           A +A S +   L D +  +R+ +++G   +P+
Sbjct: 313 ARLAASLLRDGLADRLEWFRAGLLLGGDALPA 344


>gi|158422887|ref|YP_001524179.1| riboflavin biosynthesis protein [Azorhizobium caulinodans ORS 571]
 gi|158329776|dbj|BAF87261.1| riboflavin biosynthesis protein [Azorhizobium caulinodans ORS 571]
          Length = 384

 Score =  245 bits (625), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 148/365 (40%), Positives = 205/365 (56%), Gaps = 29/365 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI----VIGRGVTAYGGCPHAEVQALEE 62
           D   M+ AL   +  +G T  NPSV  ++V+       ++GR  TA  G PHAE  AL +
Sbjct: 19  DEALMAEALAVGQLGLGRTWPNPSVGAVVVRPTSAGPQILGRAGTAPAGRPHAEPLALAQ 78

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ ARGAT YVTLEPCSH+GR+PPCA  +I  GI RVV  V+DPD RV GRG+  +   
Sbjct: 79  AGDAARGATLYVTLEPCSHFGRTPPCADAVIAAGITRVVAAVEDPDPRVRGRGVARMRAA 138

Query: 123 GIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ V   + +E  +  HA +++R    R H+ LK+AVS D   G+ G     ITG  ++ 
Sbjct: 139 GLWVTVGVGAERALEDHAGHISRVTRGRPHVLLKMAVSADGKAGLEGPRPAAITGEEARA 198

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +VHL+RA +DAI+VGIGTVLADDP+LT RL G++  SP+RI+LD   +L     +++TA 
Sbjct: 199 RVHLMRAHADAIMVGIGTVLADDPQLTVRLPGMEGRSPVRIVLDGDLRLPTTCGLVRTAE 258

Query: 242 LAPVIIVTENDDPVLALAFRKK-----NINIIYC--------DCRDLKKLLTILVGRGVT 288
             PV  +   D P    A R+K      + ++          D   + KLL +L   GVT
Sbjct: 259 QVPVWAIAAEDAP----AEREKALVDAGVQVLRAPRAASGRLDLPAVMKLLGLL---GVT 311

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRD 344
            L+VEGG  VA + ++  LVD + + RS   +G GG+ +    PL        F  V R 
Sbjct: 312 RLMVEGGPQVAAALLDEGLVDEVAVLRSPDALGAGGLDALAGRPLARLTEPVGFAVVERT 371

Query: 345 YFGSD 349
             G D
Sbjct: 372 ELGRD 376


>gi|115524816|ref|YP_781727.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris
           BisA53]
 gi|115518763|gb|ABJ06747.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Rhodopseudomonas palustris BisA53]
          Length = 383

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 149/329 (45%), Positives = 197/329 (59%), Gaps = 8/329 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D R+M  AL   R  +G T  NP+V  +IVKDG+++GRG T   G PHAEV+AL  AGE 
Sbjct: 21  DLRYMQLALALGRRGLGNTWPNPAVGAVIVKDGVIVGRGWTQPRGRPHAEVEALARAGEA 80

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGAT YVTLEPCSH+G++PPC   +IE G+ RVV  ++DP+  V+G+G   L   GI V
Sbjct: 81  ARGATLYVTLEPCSHHGKTPPCCDAVIEAGLARVVAAIEDPNPEVAGQGHAKLRAAGIKV 140

Query: 127 DRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D    +      HA   R++ + R H+ LK+A+S D+ I  AG   V ITG  +  QV L
Sbjct: 141 DVGCGAVDAARDHAGHFRKIRDGRPHVILKLALSSDDKIAAAGRKRVAITGAAANAQVQL 200

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ DAILVGIGTVLADDPELTCRL G+   SP+R++LD   ++   SK++ +A   P+
Sbjct: 201 LRAQCDAILVGIGTVLADDPELTCRLPGMAARSPVRVVLDRALRIPGASKLVLSARQTPL 260

Query: 246 IIVTENDDPVLALAFRKKNINIIY-------CDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
            ++        A A        +            DL  +L +L  RGVT L+VEGGA V
Sbjct: 261 WLIAAETAEAAAAARLGAAGAQVLRLPVEPTARGLDLNAVLKLLAERGVTRLMVEGGAQV 320

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           A +F+    VD I L+R    IG+ GIP+
Sbjct: 321 ASTFVAQNFVDEIWLFRGSQPIGDDGIPA 349


>gi|83589766|ref|YP_429775.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Moorella thermoacetica ATCC 39073]
 gi|83572680|gb|ABC19232.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Moorella
           thermoacetica ATCC 39073]
          Length = 376

 Score =  243 bits (619), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 136/329 (41%), Positives = 193/329 (58%), Gaps = 6/329 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DA FM+ AL  +R  +G TS NP+V  +IV+DG V+G G     G PHAE+ AL  AGE+
Sbjct: 5   DAIFMARALELARQGLGRTSPNPTVGAVIVRDGQVVGEGYHQKAGTPHAEIHALRAAGEK 64

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGAT YVTLEPC HYGR+PPC + II  GI+RVV  + DP+ RV+G G + LSQ GI V
Sbjct: 65  ARGATLYVTLEPCCHYGRTPPCTEAIIAAGIKRVVAAMADPNPRVAGGGFRALSQAGIEV 124

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  ++  E +    A++      R  +TLK+A++ D  I      +  ITG  ++ + H 
Sbjct: 125 ETGLLADEARRLNEAFIKYITTGRPWVTLKMALTLDGKIATRTGAARWITGPAARQRAHE 184

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR   DAILVGIGTVLADDPELT RL   +    +R+ILD H +L L ++++     AP 
Sbjct: 185 LRDIHDAILVGIGTVLADDPELTTRLPDGRGRDAIRVILDSHLRLPLSARVVNLQSEAPT 244

Query: 246 IIVTENDDPVLALA-FRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
           ++VT    P  A      + + ++     D     + LL  L  R VTS+LVEGGA V  
Sbjct: 245 LVVTTPSAPAAARENLAARGVEVLVLPEEDGRVAWQPLLAELARRQVTSILVEGGAEVNA 304

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPL 329
           + + + +VD ++ + +  + G    P+P+
Sbjct: 305 TALAAGIVDKVVAFIAPKIFGGREAPAPV 333


>gi|217978262|ref|YP_002362409.1| riboflavin biosynthesis protein RibD [Methylocella silvestris BL2]
 gi|217503638|gb|ACK51047.1| riboflavin biosynthesis protein RibD [Methylocella silvestris BL2]
          Length = 370

 Score =  242 bits (618), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 132/329 (40%), Positives = 198/329 (60%), Gaps = 12/329 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM+AA+  +R  +G+ + NP+V  LIVKDG+V+ RG T  GG PHAE +AL +AG++
Sbjct: 7   DERFMAAAIALARRGLGVCAPNPAVGALIVKDGVVLARGWTQAGGRPHAEAEALRQAGDK 66

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           +RG+T YVTLEPCSH+G++PPCA+ +I  GI RV   ++DPD RV+GRG + L   G+IV
Sbjct: 67  SRGSTLYVTLEPCSHHGKTPPCAEAVIASGIARVASAIEDPDPRVAGRGHELLRAAGLIV 126

Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP---ITGFISKNQ 182
              + ++  +  +  ++ R  + R  ITLK+A++ D  +  AG  + P   ITG  +   
Sbjct: 127 RTGVCAQAALRANLGHVLRVTQNRPLITLKLAMTADGFV--AGGPNEPRLSITGEAANGA 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VHL+RA  DAIL+G+GT LADDP LT RL GL++  P+RI+LD   ++S  S+++ TA  
Sbjct: 185 VHLMRAMYDAILIGVGTALADDPLLTVRLPGLEQRRPLRIVLDSALRISPASRLVATARS 244

Query: 243 APVIIVTENDDPVLALA-FRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296
            P +I+     P    A    +N+ +           DL+  L +L  RG+T +  E G 
Sbjct: 245 HPTLIIAGEAAPAANEARLVAENVAVARVPTDGGGRLDLRAALGLLASRGLTRIFCEAGP 304

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGI 325
            +A + +     D II+  SQ  +   G+
Sbjct: 305 TLAEALLREDAADDIIMLTSQKRLARPGL 333


>gi|218531424|ref|YP_002422240.1| riboflavin biosynthesis protein RibD [Methylobacterium
           chloromethanicum CM4]
 gi|218523727|gb|ACK84312.1| riboflavin biosynthesis protein RibD [Methylobacterium
           chloromethanicum CM4]
          Length = 376

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 142/361 (39%), Positives = 196/361 (54%), Gaps = 11/361 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D R M  AL   R ++G T  NPSV  ++V +G ++G+ VTA GG PHAE  AL  AG
Sbjct: 13  ALDRRAMRLALALGRRNLGRTWPNPSVGAVVVAEGRIVGQAVTAVGGRPHAEPLALAMAG 72

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGAT YVTLEPCSH+GR+PPC    I  GI RVV  ++DPD RV+GRG   L   GI
Sbjct: 73  EAARGATLYVTLEPCSHHGRTPPCTDATIAAGIARVVTAIEDPDPRVAGRGHAGLRAAGI 132

Query: 125 IVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V+  ++  E       + +R    R  + LK+A ++D     +    + ITG ++   V
Sbjct: 133 TVETGLLREEAARDHRGHFSRVTRGRPSLHLKLARTRDGFAAPSTGERLKITGSVADGAV 192

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           HL RA +DAI+VGIGT  ADDP LT RL GL E SP+RI+LD   +L+  S +++ A   
Sbjct: 193 HLWRAHADAIMVGIGTARADDPSLTVRLPGLAERSPLRIVLDSTLRLNPASHLVRGARDL 252

Query: 244 PVIIVTENDDPVLA---LAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAA 297
           P +++T    P  A   LA     I  +  D     DL   L  L  RG+T +  EGG A
Sbjct: 253 PTLVLTGRGAPAHARRMLASFGVEIAFVPTDAEGRIDLPAALKALAERGLTRICSEGGPA 312

Query: 298 VAHSFINSRLVDSIILYRSQIVIGE-GGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           +A +     L+D+  L    + +GE GG+P   + L     + +   V    +G D  + 
Sbjct: 313 LADTLAAHDLIDACTLITGSVTLGEAGGLPALGANLARRLADGSLSVVETRDYGPDTAVT 372

Query: 354 Y 354
           Y
Sbjct: 373 Y 373


>gi|83311440|ref|YP_421704.1| riboflavin biosynthesis protein ribD [Magnetospirillum magneticum
           AMB-1]
 gi|82946281|dbj|BAE51145.1| Riboflavin biosynthesis protein ribD [Magnetospirillum magneticum
           AMB-1]
          Length = 375

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 143/361 (39%), Positives = 209/361 (57%), Gaps = 11/361 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D   M AAL  +R  +G    NP+V C+IVKDG V+GRG T  GG PHAE +AL  AG 
Sbjct: 13  IDLGHMRAALALARRGLGTVWPNPAVGCVIVKDGRVVGRGWTQPGGRPHAETEALAMAGS 72

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            A GAT YVTLEPC+H+G++ PCA  ++  G+ RVVV V DPD RV+G+G+  L   GI 
Sbjct: 73  AALGATVYVTLEPCAHHGKTAPCADALVAAGVSRVVVAVQDPDSRVAGKGVDRLRVAGIP 132

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           + + ++ +E       +  R    R  +TLK+A + D  I      S  ITG  +++  H
Sbjct: 133 VTEGVLHAEAAELNAGFFLRINTGRPLVTLKLATTLDGRIATHTGESRWITGDQARSAAH 192

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
           LLRA++DAI+VG GT L DDP+LTCRL GL E SP+R+++D   +L L S+++ TA   P
Sbjct: 193 LLRAETDAIMVGSGTALHDDPDLTCRLPGLVERSPVRVVVDGRLRLPLTSRLVATANDVP 252

Query: 245 VIIVTEND-DPVLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAV 298
             ++T  D D     A+    ++++          DL+  L  L   GVT +LVEGGA +
Sbjct: 253 TWLLTLEDCDVNRREAYEDAGVDVVEVSPGADGAIDLELALQALGESGVTRVLVEGGAHL 312

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG--YLEK--NFMCVRRDYFGSDVCLEY 354
           + + + + LVD ++ +R+  ++G  G+P+ +  G  +L +  +F  V     G DV   Y
Sbjct: 313 SAALLRAGLVDRMVWFRAPRLMGGDGLPAAVSFGIDHLAQTPHFERVEIRPVGDDVMETY 372

Query: 355 I 355
           I
Sbjct: 373 I 373


>gi|218680684|ref|ZP_03528581.1| 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidinedea
           [Rhizobium etli CIAT 894]
          Length = 307

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 129/223 (57%), Positives = 164/223 (73%), Gaps = 1/223 (0%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQ 90
           V CLIVKD +V+G+ VTA GG PHAE QAL EAGE ARGATAYVTLEPCSH+G++PPCA+
Sbjct: 1   VGCLIVKDSVVVGQAVTAVGGRPHAEPQALAEAGEAARGATAYVTLEPCSHHGKTPPCAE 60

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKR 149
            +I  G+ RVV+ V DPD RVSGRG+  L + GI VD  ++E+EG+  L AYLTRQ + R
Sbjct: 61  ALIAYGVARVVISVTDPDPRVSGRGIAMLREAGIEVDAGVLEAEGRRSLAAYLTRQTKNR 120

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++TLK+AVS D MIG  G G V ITG  ++ +V  LRA++DAILVGIGT ++DDP LT 
Sbjct: 121 PYVTLKLAVSADGMIGREGEGQVAITGPEARAEVQALRAETDAILVGIGTAISDDPLLTV 180

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252
           R  GL+  SP+RI+LDP   L L S+++ TA   PVI+V   +
Sbjct: 181 RTPGLEAQSPIRIVLDPSLALPLTSRLVATAREVPVILVASEE 223


>gi|58578775|ref|YP_196987.1| riboflavin biosynthesis protein ribD [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417401|emb|CAI26605.1| Riboflavin biosynthesis protein ribD [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 370

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 139/353 (39%), Positives = 205/353 (58%), Gaps = 15/353 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D +FMS ALR +R  +G    NP+V C+IV DG+V+GRG T  GG PHAE+ AL+     
Sbjct: 10  DKKFMSLALRLARRGLGNVFPNPAVGCIIVNDGVVVGRGWTQVGGRPHAEIVALDNVKHL 69

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSHYG++ PC   +I  GI+RVV+  +DPD+RVSG G++ L    + V
Sbjct: 70  AKGATAYVTLEPCSHYGKTGPCVLNLINAGIKRVVIATNDPDMRVSGNGIKLLRDANVEV 129

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M++E +     +   +++ R  IT+KIA + D  I +    S  IT  +++  VH 
Sbjct: 130 RCGVMDNEARALNIGFFYSKIKNRPFITVKIASTLDGKIALNSGESKWITSELTRTWVHK 189

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R+  DA++VG  T++ D+P L  R+ GL+ +SP+RI++D + K+S    IIKTA + P 
Sbjct: 190 QRSMYDAVMVGSNTIMQDNPMLNTRIPGLECYSPVRIVIDRYGKVSNYHNIIKTADVIPT 249

Query: 246 IIVTEN-DDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGR-GVTSLLVEGGAAVAHS 301
            I+T + ++  L  A      N +  D  D  L + + +LV + G+T L VEGG+ +   
Sbjct: 250 YILTNSIEETKLGAA------NYLCIDSEDNFLSESMKVLVKKVGITRLFVEGGSILITE 303

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
            + + LVD II  RS  + G   IP+     + E     NF  V   YF  DV
Sbjct: 304 LLKNNLVDQIIWCRSNKIFGNDSIPAIGGLNIRELQSSYNFKRVDTLYFDGDV 356


>gi|58616834|ref|YP_196033.1| riboflavin biosynthesis protein ribD [Ehrlichia ruminantium str.
           Gardel]
 gi|58416446|emb|CAI27559.1| Riboflavin biosynthesis protein ribD [Ehrlichia ruminantium str.
           Gardel]
          Length = 370

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 139/353 (39%), Positives = 205/353 (58%), Gaps = 15/353 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D +FMS ALR +R  +G    NP+V C+IV DG+V+GRG T  GG PHAE+ AL+     
Sbjct: 10  DKKFMSLALRLARRGLGNVFPNPAVGCIIVNDGVVVGRGWTQVGGRPHAEIVALDNVKHL 69

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSHYG++ PC   +I  GI+RVV+ ++DPD+RVSG G++ L    + V
Sbjct: 70  AKGATAYVTLEPCSHYGKTGPCVLNLINAGIKRVVIAINDPDMRVSGNGIKLLRDANVEV 129

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M++E +     +   +++ R  IT+KIA + D  I +    S  IT  +++  VH 
Sbjct: 130 RCGVMDNEARALNIGFFYSKIKNRPFITVKIASTLDGKIALNSGESKWITSELTRTWVHK 189

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R+  DA++VG  T++ D+P L  R+ GL+ +SP+RI++D + K+S    IIKTA + P 
Sbjct: 190 QRSMYDAVMVGSNTIMQDNPMLNTRIPGLECYSPVRIVIDRYGKVSNYHNIIKTADVIPT 249

Query: 246 IIVTEN-DDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGR-GVTSLLVEGGAAVAHS 301
            I+T +  +  L  A      N +  D  D  L + + +LV + G+T L VEGG+ +   
Sbjct: 250 YILTNSIKETKLGAA------NYLCIDSEDNFLSESMKVLVKKVGITRLFVEGGSILITE 303

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
            + + LVD II  RS  + G   IP+     + E     NF  V   YF  DV
Sbjct: 304 LLKNNLVDQIIWCRSNKIFGNDSIPAIGGLNIRELQCSYNFKRVDTLYFDGDV 356


>gi|57238845|ref|YP_179981.1| riboflavin biosynthesis protein ribD [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57160924|emb|CAH57829.1| riboflavin biosynthesis protein RibD [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 365

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 139/353 (39%), Positives = 205/353 (58%), Gaps = 15/353 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D +FMS ALR +R  +G    NP+V C+IV DG+V+GRG T  GG PHAE+ AL+     
Sbjct: 5   DKKFMSLALRLARRGLGNVFPNPAVGCIIVNDGVVVGRGWTQVGGRPHAEIVALDNVKHL 64

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSHYG++ PC   +I  GI+RVV+  +DPD+RVSG G++ L    + V
Sbjct: 65  AKGATAYVTLEPCSHYGKTGPCVLNLINAGIKRVVIATNDPDMRVSGNGIKLLRDANVEV 124

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M++E +     +   +++ R  IT+KIA + D  I +    S  IT  +++  VH 
Sbjct: 125 RCGVMDNEARALNIGFFYSKIKNRPFITVKIASTLDGKIALNSGESKWITSELTRTWVHK 184

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R+  DA++VG  T++ D+P L  R+ GL+ +SP+RI++D + K+S    IIKTA + P 
Sbjct: 185 QRSMYDAVMVGSNTIMQDNPMLNTRIPGLECYSPVRIVIDRYGKVSNYHNIIKTADVIPT 244

Query: 246 IIVTEN-DDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGR-GVTSLLVEGGAAVAHS 301
            I+T + ++  L  A      N +  D  D  L + + +LV + G+T L VEGG+ +   
Sbjct: 245 YILTNSIEETKLGAA------NYLCIDSEDNFLSESMKVLVKKVGITRLFVEGGSILITE 298

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
            + + LVD II  RS  + G   IP+     + E     NF  V   YF  DV
Sbjct: 299 LLKNNLVDQIIWCRSNKIFGNDSIPAIGGLNIRELQSSYNFKRVDTLYFDGDV 351


>gi|68171296|ref|ZP_00544696.1| Riboflavin biosynthesis protein RibD [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88658608|ref|YP_506994.1| riboflavin biosynthesis protein RibD [Ehrlichia chaffeensis str.
           Arkansas]
 gi|67999277|gb|EAM85926.1| Riboflavin biosynthesis protein RibD [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88600065|gb|ABD45534.1| riboflavin biosynthesis protein RibD [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 360

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 142/356 (39%), Positives = 205/356 (57%), Gaps = 19/356 (5%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           +D +FMS ALR +R  +G    NP+V C++V  G+V+GRG T  GG PHAEV AL  AG 
Sbjct: 4   YDKKFMSLALRIARRGLGNVFPNPAVGCIVVNHGMVVGRGYTQVGGRPHAEVIALNNAGH 63

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            A+G+T YVTLEPCSHYG++ PCA  +I+ G++R+V+   DPDVRVSG G++ L   GI 
Sbjct: 64  LAKGSTVYVTLEPCSHYGQTGPCALKLIDAGVKRMVIAAKDPDVRVSGNGIELLRNAGID 123

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   +M  E +     +   +++ R  IT+K+A + D  I +    S  IT  +++N VH
Sbjct: 124 VKCGVMYEEARELNIGFFYSKIKNRPFITVKLASTLDGKIALKDGNSRWITNELTRNWVH 183

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             R+  DAI+VG  T++ D+P L  RL GL+ +SP+RI++D   K+     IIKT+ + P
Sbjct: 184 KQRSMYDAIMVGSNTIVQDNPMLNTRLPGLECYSPVRIVIDRFGKVCDYHNIIKTSDVIP 243

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTIL-VGRGVTSLLVEGGAAVAHS 301
             I+T ND P   L       + +  D +D  L+  + +L V  G+T L VEGG  +   
Sbjct: 244 TYILT-NDVPQTKLG----KASCLVVDDKDNFLRSAMKMLSVKIGITRLFVEGGGVLITE 298

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS-------PLEEGYLEKNFMCVRRDYFGSDV 350
            + ++L+D II  RS  + G   IPS        L+ GY   NF  V   YF  D+
Sbjct: 299 LLKNQLIDRIIWCRSNKIFGNDAIPSIGDLDILTLQCGY---NFRAVDTLYFKDDI 351


>gi|254469111|ref|ZP_05082516.1| riboflavin biosynthesis protein RibD [Pseudovibrio sp. JE062]
 gi|211960946|gb|EEA96141.1| riboflavin biosynthesis protein RibD [Pseudovibrio sp. JE062]
          Length = 381

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 137/368 (37%), Positives = 216/368 (58%), Gaps = 23/368 (6%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPHAEVQALEEAG 64
           RFM+AAL +     G T  NP V  ++ KD     +++G+G T   G  HAEV A+++AG
Sbjct: 17  RFMAAALSYGIRAKGRTWPNPPVGAILTKDFGDGPVIVGQGATLPPGGSHAEVLAIKDAG 76

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E A+GATAYVTLEPC+HYGR+ PCA+ ++  G+ RVV    DP+  V+GRG + L + G+
Sbjct: 77  EHAKGATAYVTLEPCAHYGRTGPCARALVAAGVSRVVYGTADPNPAVAGRGKKILEEGGV 136

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            ++  ++E E +  +  +++R + +R  + LK+AVS+D  IG  G G V I+  +S+  V
Sbjct: 137 EVLIGVLEKECREAVRGHISRILNERPFVQLKMAVSKDGYIGKRGAGQVAISSPLSRQLV 196

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H +RAQ DAI+VGIGTVL DDPEL+ RL G+   SP  ++ D   ++ L SK+++ A   
Sbjct: 197 HAMRAQMDAIVVGIGTVLEDDPELSVRLPGMAHRSPQPVVFDSQARIPLSSKLVQNAESN 256

Query: 244 PVIIVTENDDPVLAL-AFRKKNINIIYCDC-RD----LKKLLTILVGRGVTSLLVEGGAA 297
            + +V  ++ P   + A  ++ + +I  DC R+    L K L  L   G++ ++VEGGA 
Sbjct: 257 SLWVVIGDNAPDHRVSALEREGVTVIVNDCLRNGKVCLDKALDALYMHGLSQIMVEGGAE 316

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGG-IP------SPLEEGYLEKNFMCVRRDYFGSDV 350
           +AH  +   LVD +++++    +G  G +P        L++GY   N   +R  + G D+
Sbjct: 317 LAHGLLQQDLVDELLIFQGTSTVGSDGLLPFGFEGLESLQDGY---NKQMLR--HVGEDL 371

Query: 351 CLEYIGKN 358
              Y  K 
Sbjct: 372 LWRYTPKE 379


>gi|296133286|ref|YP_003640533.1| riboflavin biosynthesis protein RibD [Thermincola sp. JR]
 gi|296031864|gb|ADG82632.1| riboflavin biosynthesis protein RibD [Thermincola potens JR]
          Length = 385

 Score =  236 bits (601), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 153/364 (42%), Positives = 209/364 (57%), Gaps = 19/364 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M  AL  +    G TS NP V  +IVKDG VIG+G     G PHAEV AL EAGE 
Sbjct: 5   DVKYMRMALELAAKARGNTSPNPMVGAVIVKDGRVIGKGYHMKAGTPHAEVHALREAGEL 64

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           +RGAT YVTLEPCSHYGR+PPC++ +I  G+ RVVV ++DP+  VSG+G+Q + + GI V
Sbjct: 65  SRGATMYVTLEPCSHYGRTPPCSKAVIAAGVARVVVAMEDPNPLVSGQGIQQMREAGIQV 124

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  +ME E +     ++     +R  + +K A++ D  I  A   S  ITG  ++  VHL
Sbjct: 125 EVGLMEKEARELNEVFIKYIKTRRPFVVMKSAMTLDGKIATATGHSRWITGEEARRLVHL 184

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R+  DAILVGIGTVL D+P LTCRL   Q  +P+RIILD   +L +D  ++KT   APV
Sbjct: 185 WRSWYDAILVGIGTVLTDNPLLTCRLEDRQAQNPVRIILDSLGRLPVDVNVLKTIEQAPV 244

Query: 246 IIVTENDDPVLALA-FRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300
           I+V+    P    A   K    ++    R    DL  LL  L  R +TSL VEGGA V  
Sbjct: 245 IVVSTEKIPRERKAVLEKLGAEVLVLPEREGRPDLAALLDELGRREITSLFVEGGATVNA 304

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
           SF+ +RL D  + + +  ++G    P P+  G +   FM         D CL    KN+ 
Sbjct: 305 SFLKNRLADKTVWFVAPKIVGGPQAPGPV--GDMGIQFM---------DECLNI--KNMS 351

Query: 361 LQEL 364
           +Q++
Sbjct: 352 VQDI 355


>gi|300022486|ref|YP_003755097.1| riboflavin biosynthesis protein RibD [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524307|gb|ADJ22776.1| riboflavin biosynthesis protein RibD [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 368

 Score =  235 bits (600), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 137/320 (42%), Positives = 185/320 (57%), Gaps = 9/320 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYGGCPHAEVQALE 61
           S+FD   M+ ALR +   +G T  NPSV  +I  +  G ++ RGVTA GG PHAE QA+ 
Sbjct: 7   SAFDEEMMAIALRMAERGLGATMPNPSVGAVIADETTGEILARGVTAPGGRPHAETQAIA 66

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG+  RGAT YVTLEPCSH+GR+ PCA+ I+  G++R VV ++DPD RVSGRGL  L  
Sbjct: 67  AAGDRVRGATIYVTLEPCSHHGRTGPCAEAIVAAGLKRAVVAIEDPDPRVSGRGLDKLRD 126

Query: 122 KGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA-GCGSVPITGFIS 179
            G+ V R +  +E +     ++ R  E+R   T+K+A+     I    G   + +T  ++
Sbjct: 127 AGLEVVRGVGAAEARRITRGHIVRITERRPFTTVKLALDGSGEIARGNGVSPIWVTAEMA 186

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +    LLRA  DAILVG  TV  DDPELTCRL GL + SP RIIL     +   +K++++
Sbjct: 187 RAHGMLLRAHYDAILVGSATVRDDDPELTCRLPGLIDRSPARIILSRSLDIPAGAKLVRS 246

Query: 240 ALLAPVIIVTEND-DPVLALAFRKKNINI----IYCDCRDLKKLLTILVGRGVTSLLVEG 294
           A   P  ++T  D DP          + I    I      L  ++  LVGRGVT LLVEG
Sbjct: 247 ASGVPTWMMTAPDSDPQKREQLTSHGVEIHDIPIVGQSLWLPAIMEALVGRGVTRLLVEG 306

Query: 295 GAAVAHSFINSRLVDSIILY 314
           G  +  SF  + LVD +ILY
Sbjct: 307 GPRIWRSFAEASLVDEVILY 326


>gi|163793213|ref|ZP_02187189.1| hypothetical protein BAL199_25529 [alpha proteobacterium BAL199]
 gi|159181859|gb|EDP66371.1| hypothetical protein BAL199_25529 [alpha proteobacterium BAL199]
          Length = 369

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 144/328 (43%), Positives = 196/328 (59%), Gaps = 7/328 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D R+M+ ALR +   VG T+ NP V C++V+DG ++GRG T  GG PHAE  AL +AG  
Sbjct: 7   DDRWMALALRLAHSAVGDTAENPPVGCVLVRDGRIVGRGRTGSGGRPHAEAVALAQAGNA 66

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATA+VTLEPC+H+GR+PPCA  ++  G+ RVV  + DPD RV G G   L + G+ V
Sbjct: 67  ARGATAFVTLEPCAHHGRTPPCADALVAAGVVRVVAAIGDPDPRVDGGGFATLRRAGVSV 126

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +   +       +L+R  + R  +TLKIA S D  I  A   S  ITG  ++   H+
Sbjct: 127 SVGVAAQQAATATTGFLSRVQDARPFVTLKIATSLDGRIATASGASRWITGTAARRHAHV 186

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +RA+ DAILVGIGT LADDP LTCR  GL+E SP+R++LD   +L +DS + +TA   P 
Sbjct: 187 VRARQDAILVGIGTALADDPALTCRTPGLEERSPVRVVLDSGLRLPVDSDLARTARWVPT 246

Query: 246 IIVTE---NDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVTSLLVEGGAAVA 299
            ++T          AL      +  +  D     D+  +L  L GRG+  +LVEGGA VA
Sbjct: 247 WVITSVGAGSGHARALTDLGVEVFGVARDAGGRPDVPAVLATLAGRGIGRVLVEGGATVA 306

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS 327
            SF+ +  VD I  YR+ I+IG  G P+
Sbjct: 307 RSFVAADAVDEIQWYRAPILIGGDGRPA 334


>gi|240139918|ref|YP_002964395.1| fused diaminohydroxyphosphoribosylaminopyrimidine
           deaminase;5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Methylobacterium extorquens AM1]
 gi|240009892|gb|ACS41118.1| fused diaminohydroxyphosphoribosylaminopyrimidine
           deaminase;5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Methylobacterium extorquens AM1]
          Length = 376

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 142/361 (39%), Positives = 196/361 (54%), Gaps = 11/361 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D R M  AL   R ++G T  NPSV  ++V +G ++G+ VTA GG PHAE  AL  AG
Sbjct: 13  ALDRRAMRLALALGRRNLGRTWPNPSVGAVVVAEGRIVGQAVTAVGGRPHAEPLALAMAG 72

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGAT YVTLEPCSH+GR+PPC    I  GI RVV  ++DPD RV+GRG   L   GI
Sbjct: 73  EAARGATLYVTLEPCSHHGRTPPCTDATIAAGIARVVTAIEDPDPRVAGRGHAGLRAAGI 132

Query: 125 IVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V+  ++  E       + +R    R  + LK+A ++D     +    + ITG ++   V
Sbjct: 133 TVETGLLREEAARDHRGHFSRVTRGRPSLHLKLARTRDGFAAPSTGERLKITGSVADGAV 192

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           HL RA +DAI+VGIGT  ADDP LT RL GL E SP+RI+LD   +L+  S +++ A   
Sbjct: 193 HLWRAHADAIMVGIGTARADDPSLTVRLPGLAERSPLRIVLDSTLRLNPASHLVRGARDL 252

Query: 244 PVIIVTENDDPVLA---LAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAA 297
           P +++T    P  A   LA     I  +  D     DL   L  L  RG+T +  EGG A
Sbjct: 253 PTLVLTGRGAPAHARRMLASFGVEIAFVPTDAEGRIDLPAALKALAERGLTRICSEGGPA 312

Query: 298 VAHSFINSRLVDSIILYRSQIVIGE-GGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           +A +     L+D+  L    + +GE GG+P   + L     + +   V    +G D  + 
Sbjct: 313 LADALAAHDLIDACTLITGSVTLGEAGGLPVLGANLARRLADGSLSVVETRDYGPDTAVT 372

Query: 354 Y 354
           Y
Sbjct: 373 Y 373


>gi|84502762|ref|ZP_01000881.1| riboflavin biosynthesis protein RibD [Oceanicola batsensis
           HTCC2597]
 gi|84389157|gb|EAQ01955.1| riboflavin biosynthesis protein RibD [Oceanicola batsensis
           HTCC2597]
          Length = 367

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 138/330 (41%), Positives = 189/330 (57%), Gaps = 7/330 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D RF+S AL   R  +G T  NPSV C+IV+DG ++GRG TA GG PHAE QAL +A
Sbjct: 3   AAADRRFLSLALALGRRGLGRTWPNPSVGCVIVRDGRIVGRGWTAPGGRPHAEPQALAQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYV+LEPC+H+G++PPC + +I  GI RVV  + D D RV+G+G + L   G
Sbjct: 63  GEAARGATAYVSLEPCAHHGKTPPCTEALIAAGIARVVAPLADTDPRVAGQGFERLRWAG 122

Query: 124 IIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   +  E     HA +  R    R  +TLK+A S D  I  A   S  ITG  ++  
Sbjct: 123 IEVSTGLLGEEAARDHAGFFLRNELGRPLVTLKLASSFDGRIATATGDSRWITGAEARRA 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH +R + DA++VG GT  ADDP LT R  G     P+RI++     L L S++ +TA  
Sbjct: 183 VHAMRMRHDAVMVGAGTARADDPSLTVRDMGATRQ-PVRIVVSRRLDLPLMSRLARTAKE 241

Query: 243 APVIIVTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
            PV +    D DP L   +      +  CD      D + +L  L   G+T +  EGG A
Sbjct: 242 VPVWLCHGPDADPALHRTWADLGARLFACDVAGGHLDPRSVLGALGEAGLTRVFCEGGGA 301

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           +A S +N+ LVD++I   + + IG  G P+
Sbjct: 302 LAASLLNADLVDTLIGMTAGVAIGAEGQPA 331


>gi|254562342|ref|YP_003069437.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Methylobacterium extorquens DM4]
 gi|254269620|emb|CAX25591.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Methylobacterium extorquens DM4]
          Length = 376

 Score =  232 bits (592), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 141/361 (39%), Positives = 196/361 (54%), Gaps = 11/361 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D R M  AL   R ++G T  NPSV  ++V +G ++G+ VTA GG PHAE  AL  AG
Sbjct: 13  ALDRRAMRLALALGRRNLGRTWPNPSVGAVVVAEGRIVGQAVTAVGGRPHAEPLALAMAG 72

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGAT YVTLEPCSH+GR+PPC    I  GI RVV  ++DPD RV+GRG   L   GI
Sbjct: 73  EAARGATLYVTLEPCSHHGRTPPCTDATIAAGIARVVTAIEDPDPRVAGRGHAGLRAAGI 132

Query: 125 IVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V+  ++  E       + +R    R  + LK+A ++D     +    + ITG ++   V
Sbjct: 133 TVETGLLREEAARDHRGHFSRVTRGRPSLHLKLARTRDGFAAPSTGERLKITGSVADGAV 192

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           HL RA +DAI+VGIGT  ADDP LT RL GL E SP+RI+LD   +L+  S +++ A   
Sbjct: 193 HLWRAHADAIMVGIGTARADDPSLTVRLPGLAERSPLRIVLDSTLRLNPASHLVRGARDL 252

Query: 244 PVIIVTENDDPVLA---LAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAA 297
           P +++T    P  A   LA     I  +  D     DL   L  L  RG+T +  EGG A
Sbjct: 253 PTLVLTGRGAPAHARRMLASFGVEIAFVPTDAEGRIDLPAALKALAERGLTRICSEGGPA 312

Query: 298 VAHSFINSRLVDSIILYRSQIVIGE-GGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           +A +     L+D+  L    + +G+ GG+P   + L     + +   V    +G D  + 
Sbjct: 313 LADALAAHDLIDACTLITGSVTLGDAGGLPALGANLARRLADGSLSVVETRDYGPDTAVT 372

Query: 354 Y 354
           Y
Sbjct: 373 Y 373


>gi|73666745|ref|YP_302761.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Ehrlichia canis str. Jake]
 gi|72393886|gb|AAZ68163.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Ehrlichia canis str. Jake]
          Length = 361

 Score =  232 bits (592), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 197/349 (56%), Gaps = 7/349 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D +FMS ALR +R  +G    NP+V C++V  GI++GRG T  GG PHAEV AL  AG  
Sbjct: 5   DKKFMSLALRIARRGLGNVFPNPAVGCIVVNRGIIVGRGWTQVGGRPHAEVVALNNAGYL 64

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YVTLEPCSHYG++ PCA  +I+ GI+R+V+   DPDVRVSG G++ L    I V
Sbjct: 65  AKGATVYVTLEPCSHYGKTGPCALKLIDAGIKRMVIAARDPDVRVSGNGIKLLRDANIDV 124

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M  E +     +   +++ R  IT+K+A + D  I ++   S  IT  +++N VH 
Sbjct: 125 KCDLMYKEAQELNVGFFFTKIKGRPFITVKLASTLDGKIALSNGNSKWITNQLTRNWVHK 184

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R+  DA++VG  TV+ DDP L  R+ GL+ +SP+RI++D   K+     I+KTA + P 
Sbjct: 185 QRSMYDAVMVGSNTVVHDDPMLNTRIPGLECYSPVRIVIDRFGKICTYHNIVKTADIIPT 244

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
            I+T  DD       + K + +   D      +  I +  G+T L VEGG+ +    + S
Sbjct: 245 YILT--DDTSKTKLGKAKYLIVTGTDNFLKNAMKVISMKIGITRLFVEGGSILITELLKS 302

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDV 350
           +LVD II  RS  + G   + S  +   L      NF  +   YF  DV
Sbjct: 303 QLVDRIIWCRSNKIFGANAVSSVGDLNILTLQNLYNFRKIDTLYFDDDV 351


>gi|85706317|ref|ZP_01037411.1| riboflavin biosynthesis protein RibD [Roseovarius sp. 217]
 gi|85669090|gb|EAQ23957.1| riboflavin biosynthesis protein RibD [Roseovarius sp. 217]
          Length = 364

 Score =  232 bits (591), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 147/363 (40%), Positives = 202/363 (55%), Gaps = 13/363 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S  DARFM+ AL   R  +G  + NP+V C+IV+   ++GRG TA GG PHAE QAL +
Sbjct: 1   MSGADARFMALALSLGRRGMGQCAPNPAVGCVIVQGRHIVGRGWTAPGGRPHAETQALAQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ ARGATAYV+LEPC+H+G++PPCA  +I  GI RVV   DD D RV+GRG   L   
Sbjct: 61  AGDLARGATAYVSLEPCAHHGKTPPCADALIAAGITRVVAPFDDNDPRVAGRGFARLRAA 120

Query: 123 GIIVDR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           GI V    + +  G+  L  +L R    R  +TLK+A S D  I  A   S  ITG  ++
Sbjct: 121 GIEVRTGVLADVAGR-DLAGFLMRNEIGRPLVTLKLASSFDGRIATATGHSQWITGPEAR 179

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             VH LRA+ DA++VG GT  ADDP LT R  G +   P+R+++     L L S + +TA
Sbjct: 180 RVVHTLRARHDAVMVGAGTARADDPMLTVRDMGARRQ-PVRVVVSRRLDLPLLSNLARTA 238

Query: 241 LLAPVIIV-TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295
              P+ +    N DP L  A+R     ++ C+ R    D   +L  L   G+T +  EGG
Sbjct: 239 KDVPLWLCHGPNVDPALVAAWRGIGARLVSCEVRLGQVDPASVLKALGAEGLTRVFCEGG 298

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCVRRDYFGSDVC 351
            A+A S +++ LVD +I + +   IG  G+P    L    LE+   F  V     G DV 
Sbjct: 299 GALAASLLSAGLVDELIGFTAGFAIGAEGLPGIGALGLARLEEAARFRLVETRSLGGDVM 358

Query: 352 LEY 354
             +
Sbjct: 359 HRW 361


>gi|255003850|ref|ZP_05278651.1| riboflavin biosynthesis protein (ribD) [Anaplasma marginale str.
           Virginia]
          Length = 360

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 142/360 (39%), Positives = 196/360 (54%), Gaps = 19/360 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D RFMS ALR +   +G T  NP+V C++    G ++GRG TA GG PHAEV AL++AGE
Sbjct: 4   DERFMSIALRLAHRGLGNTYPNPTVGCVVTNSAGSIVGRGWTAMGGRPHAEVVALKQAGE 63

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            A G+T YVTLEPC H+G++ PC   +I  G+RRVV+   DPD RVSG+G + L+  G+ 
Sbjct: 64  AAAGSTVYVTLEPCCHHGQTGPCTAALISAGVRRVVIAALDPDKRVSGKGARSLADSGVE 123

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   +++ + +     +   + ++R  IT+K+A + D  I +       IT  +++  VH
Sbjct: 124 VKLGVLQQQAEELNVGFFYSKTKRRPFITVKLATTLDGKISLPNGSDRWITNELTRKWVH 183

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             RA  D I+VG  TV+ADDP L CRL GL+EHSP+RI++D   KL    K++ T+ + P
Sbjct: 184 KQRAMHDGIMVGSNTVVADDPMLDCRLPGLEEHSPIRIVIDRSGKLCSHHKVVATSDVVP 243

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGR-GVTSLLVEGGAAVAHSF 302
             I T+NDD     A R   I    C+  D L   +  L    G+T L VEGG  +    
Sbjct: 244 TYIATDNDDHKALHAVRYLRI----CERGDFLAGTMNALAEELGITRLFVEGGGVLVTEL 299

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----------NFMCVRRDYFGSDVC 351
           +   LVD  I  R+  V GE G+ S L    L              FM    D F S VC
Sbjct: 300 LKRGLVDQFIWCRANRVCGEQGVESILNLNELPSGHCHFSRVKTLTFMEDTVDIFSSFVC 359


>gi|56416383|ref|YP_153457.1| riboflavin biosynthesis protein [Anaplasma marginale str. St.
           Maries]
 gi|222474753|ref|YP_002563168.1| riboflavin biosynthesis protein (ribD) [Anaplasma marginale str.
           Florida]
 gi|254994610|ref|ZP_05276800.1| riboflavin biosynthesis protein (ribD) [Anaplasma marginale str.
           Mississippi]
 gi|56387615|gb|AAV86202.1| riboflavin biosynthesis protein [Anaplasma marginale str. St.
           Maries]
 gi|222418889|gb|ACM48912.1| riboflavin biosynthesis protein (ribD) [Anaplasma marginale str.
           Florida]
          Length = 371

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 134/328 (40%), Positives = 188/328 (57%), Gaps = 8/328 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D RFMS ALR +   +G T  NP+V C++    G ++GRG TA GG PHAEV AL++AGE
Sbjct: 4   DERFMSIALRLAHRGLGNTYPNPTVGCVVTNSAGSIVGRGWTAMGGRPHAEVVALKQAGE 63

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            A G+T YVTLEPC H+G++ PC   +I  G+RRVV+   DPD RVSG+G + L+  G+ 
Sbjct: 64  AAAGSTVYVTLEPCCHHGQTGPCTAALISAGVRRVVIAALDPDKRVSGKGARSLADSGVE 123

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   +++ + +     +   + ++R  IT+K+A + D  I +       IT  +++  VH
Sbjct: 124 VKLGVLQQQAEELNVGFFYSKTKRRPFITVKLATTLDGKISLPNGSDRWITNELTRKWVH 183

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             RA  D I+VG  TV+ADDP L CRL GL+EHSP+RI++D   KL    K++ T+ + P
Sbjct: 184 KQRAMHDGIMVGSNTVVADDPMLDCRLPGLEEHSPIRIVIDRSGKLCSHHKVVATSDVVP 243

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGR-GVTSLLVEGGAAVAHSF 302
             I T+NDD     A R   I    C+  D L   +  L    G+T L VEGG  +    
Sbjct: 244 TYIATDNDDHKALHAVRYLRI----CERGDFLAGTMNALAEELGITRLFVEGGGVLVTEL 299

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLE 330
           +   LVD  I  R+  V GE G+ S L 
Sbjct: 300 LKRGLVDQFIWCRANRVCGEQGVESILN 327


>gi|294083733|ref|YP_003550490.1| bifunctional deaminase-reductase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663305|gb|ADE38406.1| bifunctional deaminase-reductase [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 366

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 142/359 (39%), Positives = 193/359 (53%), Gaps = 23/359 (6%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  A+  +R  VG  + NP V C+I+   G +IG G TA  G PHAE  AL  AG+ A G
Sbjct: 1   MRYAISEARKAVGRAAENPPVGCVIIAASGQLIGAGHTARTGRPHAETVALAMAGQRAHG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
            TAYVTLEPC+H+G++PPCA  +IE GIRRVV+   DPD RV+G+G+  L   GI ++  
Sbjct: 61  GTAYVTLEPCAHHGQTPPCATALIEAGIRRVVIACQDPDRRVNGKGVTMLRAAGIDVITD 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +        +  +L R V KR  +T+K A S D  I +     V +T    +  VH+LR+
Sbjct: 121 IGSDMAYSVMQGFLHRMVHKRPLVTIKTATSLDGGIALGDGRKVWLTSPPMRRYVHVLRS 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP-VII 247
           +SDAIL GIGT+LADDPE+TCRL GL+  SP R ILD   +    +KI++     P VI 
Sbjct: 181 KSDAILTGIGTILADDPEMTCRLPGLEHDSPSRFILDSQLRCPPGAKILQNNNAVPTVIF 240

Query: 248 VTENDDPVLALAFRKKNINIIYCDCR-----------DLKKLLTILVGRGVTSLLVEGGA 296
             E   P   +A  K    I+                DL+K+L  L   GV +LLVE G+
Sbjct: 241 CAETASPDARIALEKSGAVIVPMAVDKAQDDGLQKRLDLQKILRYLGDAGVNNLLVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS---------PLEEGYLEKNFMCVRRDYF 346
           ++  S I   LVD I   +SQ ++G   IP+         P +  Y E +   + RD  
Sbjct: 301 SIVTSIIADDLVDVIHWTQSQHLLGSDAIPAISPLKLVALPEQTRYTETHHQQIGRDRL 359


>gi|269958267|ref|YP_003328054.1| riboflavin biosynthesis protein [Anaplasma centrale str. Israel]
 gi|269848096|gb|ACZ48740.1| riboflavin biosynthesis protein [Anaplasma centrale str. Israel]
          Length = 365

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 133/326 (40%), Positives = 184/326 (56%), Gaps = 6/326 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D RFMS ALR +R  +G T  NP+V C+I    G ++GRG TA GG PHAEV AL  AGE
Sbjct: 4   DERFMSIALRLARRGLGNTYPNPTVGCVITNGAGSIVGRGWTAMGGRPHAEVVALRHAGE 63

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            A G+TAYVTLEPC H G++ PC   +I  G+RRVV+   DPD RVSG+G + LS+ G+ 
Sbjct: 64  AAAGSTAYVTLEPCCHRGQTGPCTAALINAGVRRVVIAALDPDERVSGKGAKSLSEAGVE 123

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   +++ + +     +   +   R  +T+K+A + D  I +       IT  +++  VH
Sbjct: 124 VKLGVLQQQAEELNAGFFYSKTRSRPFVTVKLATTLDGKISLPSGDERWITNELTRKWVH 183

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             RA  D I+VG  TV+ADDP L CRL GL+EHSP+RI++D   KL    K++ T+ + P
Sbjct: 184 KQRAMHDGIMVGSNTVVADDPMLDCRLPGLEEHSPIRIVIDRSGKLRAHHKVVATSDVVP 243

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFI 303
             I T+ND+     A R   +         L + ++ L    G+T L VEGG  +    +
Sbjct: 244 TYIATDNDNHETLCAARYLKVG---GKGDFLARTMSALTEELGITRLFVEGGGVLVTELL 300

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPL 329
             RLVD  I  R+  V G G   S L
Sbjct: 301 KRRLVDQFIWCRAAKVCGTGAAESIL 326


>gi|163852584|ref|YP_001640627.1| riboflavin biosynthesis protein RibD [Methylobacterium extorquens
           PA1]
 gi|163664189|gb|ABY31556.1| riboflavin biosynthesis protein RibD [Methylobacterium extorquens
           PA1]
          Length = 371

 Score =  229 bits (584), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 145/365 (39%), Positives = 198/365 (54%), Gaps = 19/365 (5%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D R M  AL   R ++G T  NPSV  ++V +G ++G+ VTA GG PHAE  AL  AG
Sbjct: 8   ALDRRAMRLALALGRRNLGRTWPNPSVGAVVVAEGRIVGQAVTAVGGRPHAEPLALAMAG 67

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E A GAT YVTLEPCSH+GR+PPC    I  GI RVV  ++DPD RV+GRG   L   GI
Sbjct: 68  EAAHGATLYVTLEPCSHHGRTPPCTDATIAAGIARVVTAIEDPDPRVAGRGHAGLRAAGI 127

Query: 125 IVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V+  ++  E       + +R    R  + LK+A ++D     +    + ITG ++   V
Sbjct: 128 TVETGLLREEAARDHRGHFSRVTRGRPSLHLKLARTRDGFAAPSTGERLKITGSVADGAV 187

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           HL RA +DAI+VGIGT  ADDP LT RL GL E SP+RI+LD   +L+  S +++ A   
Sbjct: 188 HLWRAHADAIMVGIGTARADDPSLTVRLPGLAERSPLRIVLDSTLRLNPASHLVRGARDL 247

Query: 244 PVIIVTENDDPVLA---LAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAA 297
           P +++T    P  A   LA     I  +  D     DL   L  L  RG+T +  EGG A
Sbjct: 248 PTLVLTGRGAPAHARRMLASFGVEIAFVPIDAAGRIDLPAALKALAERGLTRICSEGGPA 307

Query: 298 VAHSFINSRLVDSIILYRSQIVIGE-GGIPS-------PLEEGYLEKNFMCVRRDYFGSD 349
           +A +     L+D+  L    + +GE GG+P+        L +G L    +   RDY G D
Sbjct: 308 LADALAAHDLIDACTLITGSVTLGEAGGLPALGANLARRLADGLLS---VVETRDY-GPD 363

Query: 350 VCLEY 354
             + Y
Sbjct: 364 TAVTY 368


>gi|149202273|ref|ZP_01879246.1| riboflavin biosynthesis protein RibD [Roseovarius sp. TM1035]
 gi|149144371|gb|EDM32402.1| riboflavin biosynthesis protein RibD [Roseovarius sp. TM1035]
          Length = 364

 Score =  229 bits (583), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 137/332 (41%), Positives = 194/332 (58%), Gaps = 9/332 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++  DARFM+ AL   R  +G  + NP+V C+IV+ G ++GRG T+ GG PHAE QAL +
Sbjct: 1   MTGADARFMALALSLGRRGMGQCAPNPAVGCVIVQGGRIVGRGWTSPGGRPHAEPQALAQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYV+LEPC+H+G++PPCA+ +I  GI RVV   DD D RV+GRG   L   
Sbjct: 61  AGELARGATAYVSLEPCAHHGQTPPCAEALIAAGIARVVAPFDDNDPRVAGRGFAMLRAA 120

Query: 123 GIIVDR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           GI V    M E  G+  L  +L R    R  +TLK+A S D  I  A   S  ITG  ++
Sbjct: 121 GIEVRTGVMAEQAGR-DLAGFLMRNEIGRPLVTLKLASSFDGRIATATGHSQWITGPEAR 179

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             VH LRA+ DA++VG GT  ADDP+LT R  G +   P+R+++     L L S + +TA
Sbjct: 180 RVVHGLRARHDAVMVGAGTARADDPQLTVRDMGARRQ-PVRVVVSRRLDLPLLSNLARTA 238

Query: 241 LLAPVIIV-TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295
              P+ +    + DP L  A++     ++ C+      D   +L  L   G+T +  EGG
Sbjct: 239 RDVPLWLCHGPHVDPALVKAWQGIGARLLPCEVTQGQVDPASVLHALGAEGLTRVFCEGG 298

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
            A+A S +++ LVD ++ + +   IG  G+P 
Sbjct: 299 GALAASLLSAGLVDELVGFTAGFAIGAEGLPG 330


>gi|163747444|ref|ZP_02154796.1| riboflavin biosynthesis protein ribD [Oceanibulbus indolifex
           HEL-45]
 gi|161379297|gb|EDQ03714.1| riboflavin biosynthesis protein ribD [Oceanibulbus indolifex
           HEL-45]
          Length = 370

 Score =  228 bits (582), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 134/326 (41%), Positives = 183/326 (56%), Gaps = 7/326 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DARFM+ AL   R   G    NP+V C+IV+   +IGRG T  GG PHAE QAL +AGE 
Sbjct: 8   DARFMALALSLGRRGQGNVWPNPAVGCVIVQGTRIIGRGWTHPGGRPHAEPQALAQAGEA 67

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGAT YVTLEPCSH+G++PPCAQ +I  G+ RVV+   D D RV+GRG+  L   GI V
Sbjct: 68  ARGATVYVTLEPCSHHGKTPPCAQALINAGVARVVIATQDDDARVNGRGIAMLRAAGIDV 127

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
                E+E +     +  R    R  +TLK+A S D  I      S  IT   ++   H 
Sbjct: 128 SVGEREAEARADHAGFFCRTDLGRPMLTLKLANSFDGRIATGTGESQWITDAPARRLTHA 187

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +RA+ DA++VG GT   DDP LT R  G+  H P R+++     L L  ++ +TA   P+
Sbjct: 188 MRARHDAVMVGAGTARKDDPSLTVRDLGV-AHQPARVVVSRRLDLPLMGQLARTAADIPL 246

Query: 246 IIVTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300
           I+    D DP L   +      ++ C  R    D   +L  L G G+T +  EGG+A+A 
Sbjct: 247 ILCHGTDADPALVRTWSDLGATLLLCAARGAQLDPTDVLRQLAGHGLTRIFCEGGSALAA 306

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIP 326
           S I + LVD ++ + + +VIG  G+P
Sbjct: 307 SLIEADLVDRLVGFTAGLVIGAEGLP 332


>gi|304437387|ref|ZP_07397346.1| riboflavin biosynthesis protein RibD [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304369643|gb|EFM23309.1| riboflavin biosynthesis protein RibD [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 367

 Score =  228 bits (582), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 138/330 (41%), Positives = 188/330 (56%), Gaps = 3/330 (0%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++  D  +M  AL  + +  G TS NP V  LIV+DGIV   G     G PHAE+ AL  
Sbjct: 1   MNETDESYMREALHLAEFARGRTSPNPLVGALIVRDGIVAASGWHRAAGEPHAEIHALRM 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGAT YVTLEPC+H GR+ PCA+ +I  GI RVVV + DP+  V+GRG+  L   
Sbjct: 61  AGELARGATLYVTLEPCAHQGRTGPCAKAVIAAGITRVVVALRDPNPLVAGRGIAMLEAA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +V  +  +E +    A+LT    KR  +TLK A++ D  I      S  ITG  ++ 
Sbjct: 121 GIEVVTGVCAAEARRQNAAFLTWVTTKRPLVTLKTAMTLDGKIASHTGASRWITGEEARL 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +VH +R  SDAILVGIGTVLADDP LT RL      +P+R++LD   +   D++++    
Sbjct: 181 RVHEMRDASDAILVGIGTVLADDPSLTTRLPHRAGKNPLRVVLDSAARTPHDARLVTDGA 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVA 299
              VI V+E  DP      R     ++       +L +LL  L     TSLLVEGGAAV 
Sbjct: 241 APTVIAVSERADPQRVDRLRACGAEVVTLGAERVELPRLLDWLGAHDCTSLLVEGGAAVN 300

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
            SF++   VD I  + + +++G G  P+P+
Sbjct: 301 WSFLSGGYVDRICAFIAPMLMGGGEAPTPV 330


>gi|46201728|ref|ZP_00208227.1| COG1985: Pyrimidine reductase, riboflavin biosynthesis
           [Magnetospirillum magnetotacticum MS-1]
          Length = 358

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 142/356 (39%), Positives = 207/356 (58%), Gaps = 11/356 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M AAL  +R  +G    NP+V C+IV+DG V+GRG T  GG PHAE +AL  AG  A GA
Sbjct: 1   MRAALALARRGLGTVWPNPAVGCVIVRDGRVVGRGWTQPGGRPHAETEALAMAGRAANGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPC+H+G++ PCA  +I  G+ RVVV V DPD RV+G+G+  L   GI + + +
Sbjct: 61  TVYVTLEPCAHHGKTAPCADALIAAGVSRVVVAVQDPDSRVAGKGIDRLRVAGIPVTEGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           + +E       +  R    R  +TLK+A + D  I      S  ITG  ++   HLLRA+
Sbjct: 121 LHAEASELNAGFFLRINTGRPLVTLKLATTLDGRIATHTGESRWITGEQARAAAHLLRAE 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           +DAI+VG GT L DDP+LTCRL GL E SP+R+++D   +L L S+++ TA   P  ++T
Sbjct: 181 TDAIMVGSGTALHDDPDLTCRLPGLVERSPVRVVVDGRLRLPLTSRLVSTANEVPTWLLT 240

Query: 250 END-DPVLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
             D D     A+    ++++          DL+  L  L   GVT +LVEGGA ++ + +
Sbjct: 241 LEDCDSDRREAYEDAGVDVVEVSPGPDGAVDLELALQALGESGVTRVLVEGGAHLSAALL 300

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEG--YLEK--NFMCVRRDYFGSDVCLEYI 355
            + LVD ++ +R+  ++G  G+P+ +  G  +L +  +F  V     G DV   YI
Sbjct: 301 RAGLVDRMVWFRAPRLMGGDGLPAAVSFGIDHLAQTPHFERVEIRALGDDVMETYI 356


>gi|196248758|ref|ZP_03147458.1| riboflavin biosynthesis protein RibD [Geobacillus sp. G11MC16]
 gi|196211634|gb|EDY06393.1| riboflavin biosynthesis protein RibD [Geobacillus sp. G11MC16]
          Length = 366

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 129/330 (39%), Positives = 190/330 (57%), Gaps = 12/330 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  ++  VG TS NP+V  ++V DG ++G G     G PHAEV A+  AGE+
Sbjct: 4   DEHYMRLALDVAKAGVGQTSPNPAVGAVVVNDGTIVGIGAHLKAGEPHAEVHAIRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-- 124
           ARGAT YVTLEPCSHYG++PPCA  +IE G+RRVVV   DP+  V+G+G+  L + GI  
Sbjct: 64  ARGATVYVTLEPCSHYGKTPPCADLLIEAGVRRVVVATTDPNPLVAGKGINKLRRAGIDV 123

Query: 125 ---IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
              I+    +   ++F H   T    K   +T+K A S D  I  A   S  IT   ++ 
Sbjct: 124 EVGILKEEADELNRMFFHYIAT----KTPFVTIKYACSLDGKIATATGESKWITSSAARE 179

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH LRAQ DAILVG+ TV+AD+P+LT R+ G Q  +P+R+ILD +    LD+ ++    
Sbjct: 180 DVHRLRAQHDAILVGVNTVMADNPKLTVRI-GQQRKNPLRVILDTNLHTPLDAHVVVDKE 238

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVA 299
               II         A  + +  + I+       D++++L +L  + +TSL VEGG+ + 
Sbjct: 239 AETWIITGSGVSREKAKMYERLGVRIVPMTSAHIDVREVLRLLGEQRITSLFVEGGSRIH 298

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
            SF+ S +V+ ++ Y +  +IG    P+P+
Sbjct: 299 DSFLRSGMVNEVVAYMAPKLIGGREAPTPV 328


>gi|147678096|ref|YP_001212311.1| pyrimidine reductase and pyrimidine deaminase [Pelotomaculum
           thermopropionicum SI]
 gi|146274193|dbj|BAF59942.1| pyrimidine reductase and Pyrimidine deaminase [Pelotomaculum
           thermopropionicum SI]
          Length = 376

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 140/359 (38%), Positives = 199/359 (55%), Gaps = 14/359 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL  +    G TS NP V  ++VK+G+V+G+G     G PHAE+ AL+EAG E
Sbjct: 3   DRYYMNMALELAARARGRTSPNPMVGAVLVKNGVVVGQGYHMKAGTPHAEIIALKEAGNE 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGAT YV LEPC HYGR+ PCA  +IE G+ RVV  + DP+  V+G GL+ + + G+ V
Sbjct: 63  ARGATLYVNLEPCCHYGRTGPCADAVIEAGVARVVAAMADPNPLVAGGGLKKIKEAGLEV 122

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +ME E +    A++     +R  +  K A+S D  I      S  ITG  ++  VH 
Sbjct: 123 TLGVMEDEARELNEAFIKYVTTRRPFVLAKAALSLDGKIAARTGRSKWITGPAARAYVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP- 244
           LR   DAILVGIGT+LADDP LT RL G     P+R+ILD   +  L++++IK    AP 
Sbjct: 183 LRDWYDAILVGIGTILADDPSLTARLPGGGGRDPVRVILDSLARTPLNARVIKQKSKAPT 242

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           VI VT    P    A ++    ++  +     DL +L+ IL  + +TS+L+EGGA V  S
Sbjct: 243 VIAVTAGAPPGRVKALQEAGAQVVVVNSGPRVDLPELMRILAEKEITSVLIEGGAEVHGS 302

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPL-------EEGYLEKNFMCVRRDYFGSDVCLE 353
              + +VD +  + +  +IG    P P+         G LE   + V R     D+C+E
Sbjct: 303 AFAAGIVDKVAWFIAPKIIGGRDAPGPVGGEGVDDPGGALELERIKVSR--LDQDICIE 359


>gi|117923484|ref|YP_864101.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Magnetococcus sp. MC-1]
 gi|117607240|gb|ABK42695.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Magnetococcus sp. MC-1]
          Length = 376

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 137/328 (41%), Positives = 192/328 (58%), Gaps = 10/328 (3%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P +  D  +M  ALR +   +G T  NP+V C+IVK+  +IGRG     G PHAEV+AL 
Sbjct: 4   PDAGKDRAYMDHALRLAARGLGRTRPNPTVGCVIVKEDRIIGRGWHRKAGGPHAEVEALR 63

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AGE ARGATAYVTLEPCSH+GR+PPC + +I+ GIRRVV  ++DP+  VSG+G Q L Q
Sbjct: 64  MAGEAARGATAYVTLEPCSHHGRTPPCCEGLIKAGIRRVVAAMEDPNPLVSGQGFQRLKQ 123

Query: 122 KGIIVDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            G++V   +  E  ++ +  ++TR +  R  +TLK A S D         S  ITG  ++
Sbjct: 124 AGVVVQVGVREEAAQMLIRPFITRILHNRPMVTLKSAASLDGKTATRERHSQWITGEAAR 183

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            + H LR   D IL GI TVLADDP LTCRL G ++  P+R+++D   KLS ++ +I   
Sbjct: 184 KRGHRLRDTHDVILTGIQTVLADDPRLTCRLKGGRD--PIRVVVDSSLKLSENAGVINPD 241

Query: 241 LLAPVIIVTENDDP--VLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVE 293
             APV + T    P    AL      + +I C        DL  L+  L  R +TS+L E
Sbjct: 242 STAPVWVATTLRAPEEKRALFALLPGVEVIMCAEDDTGRVDLYDLMEKLAKREITSVLAE 301

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG 321
            G  ++ + ++ RLVD I L+ + ++IG
Sbjct: 302 AGGVLSGALLDKRLVDRIALFMAPMLIG 329


>gi|126733197|ref|ZP_01748944.1| riboflavin biosynthesis protein RibD [Roseobacter sp. CCS2]
 gi|126716063|gb|EBA12927.1| riboflavin biosynthesis protein RibD [Roseobacter sp. CCS2]
          Length = 369

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 129/325 (39%), Positives = 190/325 (58%), Gaps = 8/325 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DARFM+ AL   R  +G    NP+V C+IV D  ++GRG TA GG PHAE  AL +AG  
Sbjct: 6   DARFMALALMLGRRGMGRVWPNPAVGCVIVNDCNIVGRGWTADGGRPHAEAIALAQAGSA 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GAT YVTLEPC+H+G++PPC+  +I+  + RVV+  DDPD RV+GRG+  L   G+ V
Sbjct: 66  ADGATVYVTLEPCAHHGKTPPCSNALIKANVARVVIAADDPDERVNGRGIAMLRDAGVQV 125

Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  + ++     HA +L+R  + R  +TLK+A + D  I  A   S  ITG  ++  VH+
Sbjct: 126 DCGVGNKAAARDHAGFLSRITQGRPFVTLKLAGTLDGRIATATGESQWITGPEARRMVHM 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +RA+ DA++VG GTV ADDP LT R  G+  H P+R+++    K+ + S++ +TA   PV
Sbjct: 186 MRARHDAVMVGAGTVRADDPSLTVRGLGIV-HQPVRVVVSRALKIPVTSQLAQTARDTPV 244

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            +    +  V    +  K    + C       D   ++T L  +G+T +  EGG   A S
Sbjct: 245 WLCHGPEADV--AGWTAKGAVSLPCATAANQVDPHAIMTTLADQGITRVFCEGGGMFAAS 302

Query: 302 FINSRLVDSIILYRSQIVIGEGGIP 326
            +N+ LVD ++++ +   IG  G P
Sbjct: 303 LLNAGLVDQLVVFSAGAAIGAEGTP 327


>gi|332982092|ref|YP_004463533.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Mahella australiensis 50-1 BON]
 gi|332699770|gb|AEE96711.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Mahella australiensis 50-1 BON]
          Length = 363

 Score =  226 bits (577), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 127/321 (39%), Positives = 183/321 (57%), Gaps = 5/321 (1%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  AL  +R   G T+ NP V  +IVK G +IG G     G PHAE+ AL EAGE ARG
Sbjct: 6   FMQRALELARMGWGTTNPNPMVGAVIVKGGRIIGEGYHKKAGEPHAEINALREAGEGARG 65

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           +T YVTLEPCSH+GR+PPCA  +++ G++ VV+ ++DP+ RV+GRG+  L Q GI ++  
Sbjct: 66  STVYVTLEPCSHFGRTPPCADALVKAGVKEVVIAMEDPNPRVAGRGINALRQAGIKVITG 125

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +ME E +     ++         +  K A++ D  I  A   S  IT  +S+  VH  R 
Sbjct: 126 IMEQEARRLNEVFIKYITSDMPFVIWKCAMTLDGKIATANGDSKWITNELSRQYVHWWRY 185

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           +  A+L GIGTVLADDP LT RL  +  E  P+RII D   K  LDS ++       ++ 
Sbjct: 186 RVSAVLTGIGTVLADDPMLTVRLPHINIEKQPVRIIADSLAKTPLDSNVLNIEQAPTIMA 245

Query: 248 VTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
            + + DP     F+ K  ++I  D +   DL +L+  L  R + S+L+EGG  +A S I 
Sbjct: 246 TSWSADPSKIETFKSKGADVIITDGKDKVDLVQLMRELHKREIDSVLIEGGPTLAASAIE 305

Query: 305 SRLVDSIILYRSQIVIGEGGI 325
             LVD  +++ +  +IG  G+
Sbjct: 306 EGLVDKAMVFIAPKLIGGKGL 326


>gi|313902290|ref|ZP_07835695.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           ;5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467441|gb|EFR62950.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           ;5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Thermaerobacter subterraneus DSM 13965]
          Length = 443

 Score =  226 bits (576), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 135/332 (40%), Positives = 190/332 (57%), Gaps = 10/332 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  AL  +    G T  NP V  +IV+DG+V+G G     G PHAEV+AL  A ++
Sbjct: 40  DRHFMRRALDLAARAGGRTHPNPMVGAVIVRDGVVVGEGYHRRAGEPHAEVEALRSARDQ 99

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGAT YVTLEPC H+GR+PPC + I+  G+RRVVV + DPD RV+GRGL  L+Q G+ V
Sbjct: 100 ARGATLYVTLEPCCHHGRTPPCTEAILAAGLRRVVVAMVDPDPRVAGRGLSVLAQAGVEV 159

Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +E++  + L+ AY+  +V  R  +T K A++ D  I  A   S  ITG  ++  VH 
Sbjct: 160 AVGVEADRALRLNEAYVVHRVLGRPMVTAKYAMTLDGRIATARGESRWITGPRARRWVHR 219

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR + DAILVG+GTVLADDP LT R +      P+R+ILD H +   D+++I+ A  +P 
Sbjct: 220 LRDRVDAILVGVGTVLADDPSLTVRWH-PGGRDPVRVILDSHARTPPDAQVIRAARHSPA 278

Query: 246 ---IIVTENDDPVLALAFRKKNINIIYCDCRDLKK-----LLTILVGRGVTSLLVEGGAA 297
              + VT     V         + ++        +     LL  L  RG+  LLVEGGA+
Sbjct: 279 PTWVAVTPQAPAVRTARLEAAGVQVLRVPADPHGRVSILHLLRELASRGIVHLLVEGGAS 338

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
           V  SF  + LVD ++ + +  ++G    P P+
Sbjct: 339 VHGSFFAAGLVDRVVAFIAPKLVGGRAAPGPI 370


>gi|126738756|ref|ZP_01754452.1| riboflavin biosynthesis protein RibD [Roseobacter sp. SK209-2-6]
 gi|126719937|gb|EBA16644.1| riboflavin biosynthesis protein RibD [Roseobacter sp. SK209-2-6]
          Length = 370

 Score =  225 bits (574), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 134/327 (40%), Positives = 188/327 (57%), Gaps = 7/327 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DAR+M+ AL   R   G    NP+V C+IVK+G ++GRG T  GG PHAE QAL +AGE 
Sbjct: 10  DARYMALALSLGRRGQGKCWPNPAVGCVIVKEGRIVGRGWTQPGGRPHAEPQALAQAGEA 69

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+G +PPCAQ +I+ G+  VV  ++D D RVSG+G + L   GI V
Sbjct: 70  ARGATAYVTLEPCSHFGETPPCAQALIDAGVSHVVAAIEDSDPRVSGQGFEMLRMAGITV 129

Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              + +E     HA +  +  + R  +TLK+A S D  I      S  ITG  ++ +VH 
Sbjct: 130 RTGVLAEEAGLDHAGFFYKTEQGRPWVTLKLASSFDGRIATGSGQSKWITGPEARRRVHA 189

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +RA  DA++VG GT  ADDP LT R  G+ E  P+R+++  H  L L  ++ +TA   PV
Sbjct: 190 MRACHDAVMVGGGTARADDPSLTVRDLGVAEQ-PVRVVISRHLDLPLMGQLARTAKEVPV 248

Query: 246 IIVTENDDPVLAL-AFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300
            +       V  + A+      ++ C       D   +L  L   G+T +  EGG+A+A 
Sbjct: 249 WLCHGAGADVERIQAWEGLGARLLPCAAHGVQLDPNDILQQLGAAGLTRVFCEGGSALAA 308

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS 327
           S +   LVD +I + + + IG  G+PS
Sbjct: 309 SLLAFDLVDELIGFTAGLGIGAEGLPS 335


>gi|238927494|ref|ZP_04659254.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Selenomonas
           flueggei ATCC 43531]
 gi|238884776|gb|EEQ48414.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Selenomonas
           flueggei ATCC 43531]
          Length = 386

 Score =  225 bits (573), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 137/330 (41%), Positives = 187/330 (56%), Gaps = 3/330 (0%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++  D  +M  AL  + +  G TS NP V  LIV+DGIV   G     G PHAE+ AL  
Sbjct: 20  MNETDESYMREALHLAEFARGRTSPNPLVGALIVRDGIVAASGWHRAAGEPHAEIHALRM 79

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGAT YVTLEPC+H GR+ PCA+ +I  GI RVVV + DP+  V+GRG+  L   
Sbjct: 80  AGELARGATLYVTLEPCAHQGRTGPCAKAVIAAGITRVVVALRDPNPLVAGRGIAMLEAA 139

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +V  +  +E +    A+LT    KR  +TLK A++ D  I      S  ITG  ++ 
Sbjct: 140 GIEVVTGVCAAEARRQNAAFLTWVTTKRPLVTLKTAMTLDGKIASHTGASRWITGEEARL 199

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +VH +R  SDAILVGIGTVLADDP LT RL      +P+R++LD   +   D++++    
Sbjct: 200 RVHEMRDASDAILVGIGTVLADDPSLTTRLPHRAGKNPLRVVLDSAARTPHDARLVTDGA 259

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVA 299
              VI V+E  D       R     ++       +L ++L  L  R  TSLLVEGGAAV 
Sbjct: 260 APTVIAVSERADQRRVDRLRACGAEVVTLGAERVELPRVLDWLGARDCTSLLVEGGAAVN 319

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
            SF+    VD I  + + +++G G  P+P+
Sbjct: 320 WSFLAGGYVDRICAFIAPMLMGGGEAPTPV 349


>gi|302390233|ref|YP_003826054.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           ;5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200861|gb|ADL08431.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           ;5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Thermosediminibacter oceani DSM 16646]
          Length = 373

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 131/326 (40%), Positives = 196/326 (60%), Gaps = 6/326 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  AL  ++   G TS NP V  ++VKDG ++G G     G PHAEV+AL +A E 
Sbjct: 4   DVFFMRRALDLAKKGRGTTSPNPMVGAVVVKDGEIVGEGYHRKAGEPHAEVEALAQAAER 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGA  YV LEPC HYGR+PPCA  II  G++RVV  + DP+  V+G+G++ L + GI +
Sbjct: 64  ARGAELYVNLEPCCHYGRTPPCADTIIRAGVKRVVAAMADPNPLVAGKGIKRLKEAGIEV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++E E K     ++   +  +  +  KIA S D  I MA   S  ITG  ++ + H 
Sbjct: 124 VVGVLEEEAKKLNEVFIKYIITGKPFVVAKIAQSFDGKIAMASGESRWITGEPARVKAHE 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR+  DAI+VG+GTV+ADDP LTCRL   +  +P+RI++D   ++  D+++++      +
Sbjct: 184 LRSWYDAIMVGVGTVMADDPLLTCRLP-EKRKNPVRIVVDSGARMPPDARMLRCEGGRVI 242

Query: 246 IIVTENDDPVLALAFRKKNINIIY---CDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           +  TE  D     A +++ + +I     + R DL +L+ IL G G+TS+LVEGG+ +  S
Sbjct: 243 LATTERADSERVSALKERGVEVIKVPPAEGRVDLSRLMEILGGMGITSVLVEGGSTLTSS 302

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS 327
            I   LVD ++++ + +VIG  GI S
Sbjct: 303 LIKGNLVDKLLVFVAPVVIGGEGIDS 328


>gi|188582604|ref|YP_001926049.1| riboflavin biosynthesis protein RibD [Methylobacterium populi
           BJ001]
 gi|179346102|gb|ACB81514.1| riboflavin biosynthesis protein RibD [Methylobacterium populi
           BJ001]
          Length = 359

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 142/356 (39%), Positives = 195/356 (54%), Gaps = 12/356 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  AL   R ++G T  NPSV  ++V  DG ++G+ VTA GG PHAE  AL  AGE ARG
Sbjct: 1   MRLALALGRRNLGRTWPNPSVGAVVVTPDGRIVGQAVTAPGGRPHAEPLALAMAGEAARG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128
           AT YVTLEPCSH+GR+PPC +  I  G+ RVV  ++DPD RV+GRG   L   GI V+  
Sbjct: 61  ATLYVTLEPCSHHGRTPPCTEATIRSGVARVVTAIEDPDPRVAGRGHAGLRAAGIAVETG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++  E       + +R  + R  + LK+A ++D     +    + ITG I+   VHL RA
Sbjct: 121 LLREEAARDHRGHFSRVTKGRPSLHLKLARTRDGFAAPSTGERLKITGAIADGAVHLWRA 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
            +DAI+VGIGT  ADDP LT RL GL E SP+RI+LD   +L+  S +++ A   P +++
Sbjct: 181 HADAIMVGIGTARADDPSLTVRLPGLTERSPLRIVLDSTLRLNPASHLVRGARDLPTLVL 240

Query: 249 TENDDPVLA---LAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           T    P  A   LA     I  +  D +   DL   L  L  RG+T +  EGG A+A + 
Sbjct: 241 TGRGAPAHARRMLASFGVEIAFVPTDAQGRIDLPAALAALAERGLTRICSEGGPALADAL 300

Query: 303 INSRLVDSIILYRSQIVIGE-GGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
               L+D+  L    + +GE GG+P+    L     + +F  V     G D    Y
Sbjct: 301 AAHDLIDACTLITGAVALGEAGGLPALGPNLARRLADGSFATVETRDLGPDTATTY 356


>gi|88607630|ref|YP_504671.1| riboflavin biosynthesis protein RibD [Anaplasma phagocytophilum HZ]
 gi|88598693|gb|ABD44163.1| riboflavin biosynthesis protein RibD [Anaplasma phagocytophilum HZ]
          Length = 364

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 132/326 (40%), Positives = 186/326 (57%), Gaps = 11/326 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM+ AL  +R  +G    NP+V C++++DG+V+GRG T  GG PHAE+ AL+ AG  
Sbjct: 4   DERFMAMALTLARRGLGNVYPNPAVGCVVIRDGVVVGRGWTVAGGRPHAEIVALQNAGNR 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GAT YVTLEPC H G + PC   +I  G+ RVV+ V DPD RVSG+G+  L   GI V
Sbjct: 64  AIGATVYVTLEPCCHDGVTGPCTSALINAGVSRVVIGVQDPDYRVSGKGISSLEAAGIEV 123

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM-AGCGSVPITGFISKNQVH 184
              +++ + +     +   +V  R  IT K+A + D  I    GC    IT  +++  VH
Sbjct: 124 KYGVLQQQAEALNAGFFYSKVLHRPLITAKLATTLDGKISFDEGCDRW-ITNDLTRKWVH 182

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             RA  DAILVG  TV+ADDP L CRL GL++HSP+R+++D   KL    KI+ TA   P
Sbjct: 183 KQRAMYDAILVGSNTVVADDPMLDCRLPGLEKHSPIRVVVDRSGKLLAHHKIVCTAGTIP 242

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGR-GVTSLLVEGGAAVAHS 301
             IVT+ND   +      +N+  I  D     L+ ++  L  + G+T L VEGG  +   
Sbjct: 243 TYIVTDNDPQCVF-----ENVKYIKVDGGTEFLENMVRALTAQLGITRLFVEGGGILITE 297

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS 327
            +  +L+D  I  R+  + G  G+ S
Sbjct: 298 LLKKKLIDRFIWTRANKISGSKGLNS 323


>gi|220931842|ref|YP_002508750.1| riboflavin biosynthesis protein RibD [Halothermothrix orenii H 168]
 gi|219993152|gb|ACL69755.1| riboflavin biosynthesis protein RibD [Halothermothrix orenii H 168]
          Length = 366

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 127/323 (39%), Positives = 191/323 (59%), Gaps = 8/323 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  +R  VG TS NP V  ++V+D  ++G G   Y G PHAEV ALEEAGE+
Sbjct: 4   DIYYMEKALTLARKGVGYTSPNPMVGAVVVRDDKIVGEGHHRYYGGPHAEVYALEEAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A G+T YV LEPCSHYG++PPC   IIE G++RVV+ + DP+ RVSG+G++ L + GI V
Sbjct: 64  AFGSTLYVNLEPCSHYGKTPPCVFKIIESGVKRVVISMVDPNPRVSGKGIEMLKKAGIEV 123

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E + +     ++     +   + LK+A + D  +  +   S  +TG  ++  VH 
Sbjct: 124 TVGVLEEKARNLNEVFIKNITNRMPFVYLKMAQTLDGYLATSSGDSRWVTGKKARQYVHR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR + DAILVGIGTVL DDP LT RL+  +    ++I+LD   K+ L + I+     APV
Sbjct: 184 LRHRVDAILVGIGTVLKDDPRLTTRLSDGKGKDSIKIVLDSKLKIPLTANILNQENDAPV 243

Query: 246 IIVTEN--DDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAV 298
           IIV  +  D        + K++ ++  D  +     +K+LL  L  +G++SLLVEGG  V
Sbjct: 244 IIVCGHRVDSHKKKSLKQLKSVEVLSLDLNEYGQIPIKELLINLNKKGISSLLVEGGGRV 303

Query: 299 AHSFINSRLVDSIILYRSQIVIG 321
            +SF+    VD ++ + +  ++G
Sbjct: 304 NYSFLKEGFVDKMLFFIAPKLLG 326


>gi|15605717|ref|NP_213094.1| riboflavin specific deaminase [Aquifex aeolicus VF5]
 gi|6225948|sp|O66534|RIBD_AQUAE RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
           RecName:
           Full=Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase; Includes: RecName:
           Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|2982867|gb|AAC06487.1| riboflavin specific deaminase [Aquifex aeolicus VF5]
          Length = 356

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 122/322 (37%), Positives = 186/322 (57%), Gaps = 4/322 (1%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   D  +M  AL  ++   G T  NP+V  ++VK+G ++G G     G PHAEV AL +
Sbjct: 2   IREIDKNYMKLALSLAKKRKGYTHPNPTVGAVVVKEGKIVGLGYHEKAGKPHAEVMALGQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE+A+GAT YVTLEPC+H+GR+PPC   II  GI+RVVV   DP+  +SG+G++ L   
Sbjct: 62  AGEKAKGATLYVTLEPCTHFGRTPPCTDAIIRSGIKRVVVATLDPNPLMSGKGVEKLRNA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI VD  + E E +     + T   ++R +ITLK A + D  +      S  IT   S+ 
Sbjct: 122 GIEVDVGVCEEEARELNEDFFTYITQERPYITLKWAQTLDGKLATLTGSSKWITSKESRK 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
             H+LR ++ A+LVG+ TV+ DDP LT R     E  P+RIILDP  ++ L +K++ T  
Sbjct: 182 VAHILRREATAVLVGVNTVIKDDPHLTVRFVP-TEKQPVRIILDPELEVPLSAKVLNTE- 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            AP I++T+ ++   A   ++K + ++     +LK +L  L    +  L+VEGG     S
Sbjct: 240 EAPTIVITKKENEK-AEKLKEKGVQVLILKGFNLKNILKKLKELEIMHLMVEGGPRTLTS 298

Query: 302 FINSRLVDSIILYRSQIVIGEG 323
           F+     D I+++ +  ++GEG
Sbjct: 299 FLKEGFFDRIVVFIAPKIMGEG 320


>gi|138895866|ref|YP_001126319.1| riboflavin biosynthesis protein RibD [Geobacillus
           thermodenitrificans NG80-2]
 gi|134267379|gb|ABO67574.1| Riboflavin biosynthesis protein RibD [Geobacillus
           thermodenitrificans NG80-2]
          Length = 359

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 128/326 (39%), Positives = 188/326 (57%), Gaps = 12/326 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  ++  VG TS NP+V  ++V DG ++G G     G PHAEV A+  AGE+ARGA
Sbjct: 1   MRLALDVAKAGVGQTSPNPAVGAVVVNDGTIVGIGAHLKAGEPHAEVHAIRMAGEKARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----I 125
           T YVTLEPCSHYG++PPCA  +IE G+RRVVV   DP+  V+G+G+  L + GI     I
Sbjct: 61  TVYVTLEPCSHYGKTPPCADLLIEAGVRRVVVATTDPNPLVAGKGINKLRRAGIDVEVGI 120

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +    +   ++F H   T    K   +T+K A S D  I  A   S  IT   ++  VH 
Sbjct: 121 LKEEADELNRMFFHYIAT----KTPFVTIKYACSLDGKIATATGESKWITSSAAREDVHR 176

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ DAILVG+ TV+AD+P+LT R+ G Q  +P+R+ILD +    LD+ ++        
Sbjct: 177 LRAQHDAILVGVNTVMADNPKLTVRI-GQQRKNPLRVILDTNLHTPLDAHVVVDKEAETW 235

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           II         A  + +  + I+       D++++L +L  + +TSL VEGG+ +  SF+
Sbjct: 236 IITGSGVSREKAKMYERLGVRIVPMTSAHIDVREVLRLLGEQRITSLFVEGGSRIHDSFL 295

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPL 329
            S +V+ ++ Y +  +IG    P+P+
Sbjct: 296 RSGMVNEVVAYMAPKLIGGREAPTPV 321


>gi|289523035|ref|ZP_06439889.1| riboflavin biosynthesis protein RibD [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503578|gb|EFD24742.1| riboflavin biosynthesis protein RibD [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 365

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 126/318 (39%), Positives = 184/318 (57%), Gaps = 6/318 (1%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M   L  +R   G TS NP V C++VKD  ++G G     G PHAEV AL  A + +RG
Sbjct: 14  YMRIVLSLARRGTGRTSPNPRVGCVVVKDDKIVGTGFHRCPGSPHAEVMALSMAKDMSRG 73

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           AT YV LEPC HYGR+PPCA  I+E GI+RV +  +DP  +V GRG+++L   G+ +V  
Sbjct: 74  ATLYVNLEPCIHYGRTPPCAPLIVERGIKRVFISTEDPFPKVRGRGVEYLRSHGVEVVSG 133

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++  E +     +L    E R  ITLK A+S D  + ++   S  ITG  S  + HLLRA
Sbjct: 134 VLSDEARWLNRGFLKVFEEGRPWITLKAAMSLDGDVALSDGSSRWITGRSSLKRSHLLRA 193

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           ++DA+LVGIGT+L DDPELT R   ++   P++IILD H ++ +++K+ K   +  V   
Sbjct: 194 EADAVLVGIGTILKDDPELTVRY--VEGEHPLKIILDTHLRIPINAKVFKEGDVLVVTSK 251

Query: 249 TENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
             +   V  +  R   +  I  D R   D+K+++  L    V  LLVEGG  V  SF ++
Sbjct: 252 GSSPQKVEEIISRGAGVMQIPTDSRGFLDIKEMVCKLPSMDVHYLLVEGGPNVLSSFFDA 311

Query: 306 RLVDSIILYRSQIVIGEG 323
           +L D + L+ +  ++G G
Sbjct: 312 KLFDEMALFYAPKIMGRG 329


>gi|251796359|ref|YP_003011090.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. JDR-2]
 gi|247543985|gb|ACT01004.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. JDR-2]
          Length = 368

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 132/363 (36%), Positives = 200/363 (55%), Gaps = 17/363 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+ +MS AL  +    G T  NP V C++VKDG +IG G     G  HAEV AL+ AG+E
Sbjct: 6   DSYYMSLALELAAKASGQTGINPVVGCVVVKDGRIIGVGTHLKRGTGHAEVHALQMAGDE 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GAT YVTLEPCSHYG++PPC + II     RVVV   DP+ +V+GRG+  L ++GI V
Sbjct: 66  AEGATVYVTLEPCSHYGKTPPCCERIINAKAARVVVATTDPNPQVAGRGIARLREEGIEV 125

Query: 127 DRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  +  E    ++    + +  R  ++TLK A + D  I      S  ITG  ++ QVH 
Sbjct: 126 EVGLLEEQSRSMNEKFNKYITSRLPYVTLKTASTLDGKIASHTGDSRWITGSTAREQVHT 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR Q +AI+VGIGT+LADDP+LT R      H P+RII+D   +L LD++++   L   +
Sbjct: 186 LRHQHEAIMVGIGTLLADDPQLTTRAAVPAIH-PVRIIVDSQLRLPLDARVVTDGLARTI 244

Query: 246 IIVTENDDPVLALAFRKKNINIIYCD-------CRDLKKLLTILVGRGVTSLLVEGGAAV 298
           ++ +   DP    A  +  + +I C           ++KL  + +G    S+L+EGG  +
Sbjct: 245 VLASAKADPSREQALTEAGVEVIRCGDGEQVVLAEAMRKLGELEIG----SILLEGGGKL 300

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
             + + + L+D I++Y +  +IG    P        EK    +  D+    V +E  G++
Sbjct: 301 NGAMLEAGLIDKIMIYMAVKIIGGLDSPGTFTFAGFEKMSEAIELDH----VKVEMAGED 356

Query: 359 LCL 361
           +C+
Sbjct: 357 ICI 359


>gi|289549140|ref|YP_003474128.1| riboflavin biosynthesis protein RibD [Thermocrinis albus DSM 14484]
 gi|289182757|gb|ADC90001.1| riboflavin biosynthesis protein RibD [Thermocrinis albus DSM 14484]
          Length = 353

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 133/352 (37%), Positives = 197/352 (55%), Gaps = 11/352 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  +R   GLT  NP+V C++VKDG +I  G     G PHAEV AL +AG+ A+ +
Sbjct: 1   MGRALELARLRKGLTHPNPTVGCVVVKDGKIISEGYHERAGAPHAEVVALSKAGQNAKDS 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129
           T YVTLEPCSHYGR+PPC   IIE G++RVVV   DP+ +V G G++ L   GI VD  +
Sbjct: 61  TLYVTLEPCSHYGRTPPCTNAIIEAGVKRVVVATLDPNPKVMGSGIERLRAAGIQVDVGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E E +     +     + R +ITLK A S D  +      S  IT   S+   H LRA+
Sbjct: 121 LEEEARQLNEDFFVYITQNRPYITLKWAQSIDGSLATKTGDSKWITSRESREFAHRLRAE 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-IKTALLAPVIIV 248
           + AILVG+ TV+ DDP LT R   L E  P+R++LDP+ +  L + + + T+    ++  
Sbjct: 181 ATAILVGVNTVVKDDPLLTVRAF-LWERQPIRVVLDPYLRTPLQANLMVDTSAKTILVTC 239

Query: 249 TENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           ++ +D V  L      ++++  +C     DL+ L+  +  + +  L+VEGGA     FI 
Sbjct: 240 SQKEDKVKKL--EDMGVSVVKAECVKGRVDLRWLMRWMHQQEIMHLMVEGGARTLEGFIE 297

Query: 305 SRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDY-FGSDVCLEY 354
             L D I+++   ++IG G  + SP  E  ++   +  RR +  G DV +EY
Sbjct: 298 EGLWDRIVVFLGPLLIGNGIRVRSPGAEKLMDAIPLRKRRLWQLGEDVAIEY 349


>gi|255002722|ref|ZP_05277686.1| riboflavin biosynthesis protein (ribD) [Anaplasma marginale str.
           Puerto Rico]
          Length = 364

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 131/324 (40%), Positives = 185/324 (57%), Gaps = 8/324 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           MS ALR +   +G T  NP+V C++    G ++GRG TA GG PHAEV AL++AGE A G
Sbjct: 1   MSIALRLAHRGLGNTYPNPTVGCVVTNSAGSIVGRGWTAMGGRPHAEVVALKQAGEAAAG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           +T YVTLEPC H+G++ PC   +I  G+RRVV+   DPD RVSG+G + L+  G+ V   
Sbjct: 61  STVYVTLEPCCHHGQTGPCTAALISAGVRRVVIAALDPDKRVSGKGARSLADSGVEVKLG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +++ + +     +   + ++R  IT+K+A + D  I +       IT  +++  VH  RA
Sbjct: 121 VLQQQAEELNVGFFYSKTKRRPFITVKLATTLDGKISLPNGSDRWITNELTRKWVHKQRA 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
             D I+VG  TV+ADDP L CRL GL+EHSP+RI++D   KL    K++ T+ + P  I 
Sbjct: 181 MHDGIMVGSNTVVADDPMLDCRLPGLEEHSPIRIVIDRSGKLCSHHKVVATSDVVPTYIA 240

Query: 249 TENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGR-GVTSLLVEGGAAVAHSFINSR 306
           T+NDD     A R   I    C+  D L   +  L    G+T L VEGG  +    +   
Sbjct: 241 TDNDDHKALHAVRYLRI----CERGDFLAGTMNALAEELGITRLFVEGGGVLVTELLKRG 296

Query: 307 LVDSIILYRSQIVIGEGGIPSPLE 330
           LVD  I  R+  V GE G+ S L 
Sbjct: 297 LVDQFIWCRANRVCGEQGVESILN 320


>gi|309378405|emb|CBX22958.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 369

 Score =  223 bits (568), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 129/327 (39%), Positives = 186/327 (56%), Gaps = 9/327 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL+ +      TS NP V C+I + G V+G+G     G PHAEV AL +A
Sbjct: 3   SETDISMMQNALKLAALGRFSTSPNPRVGCVIAQGGQVVGQGFHVKAGEPHAEVHALRQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   G
Sbjct: 63  GEMAKGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  ++ESE +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  
Sbjct: 123 IKTECGLLESEARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V +LRA+S A+L GIGTVLAD+P L  R    L++  P RI+LD   +L LDS ++    
Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296
               I   E ++  L       ++ I+      D + DL +L+ +L G G   ++VE GA
Sbjct: 241 SPTYIATLERNEDRLHPYREHAHVRILMPSETADGKIDLHRLMRLLAGEGYGEVMVEAGA 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +  +F+   L D I+LYRS  ++G G
Sbjct: 301 KLTSAFLAEDLADEIVLYRSPKILGSG 327


>gi|221632527|ref|YP_002521748.1| riboflavin biosynthesis protein RibD [Thermomicrobium roseum DSM
           5159]
 gi|221155601|gb|ACM04728.1| riboflavin biosynthesis protein RibD [Thermomicrobium roseum DSM
           5159]
          Length = 382

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 139/363 (38%), Positives = 196/363 (53%), Gaps = 16/363 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  +R   G  + NP+V  +IV++G V+G G T   G PHAE+ AL+ AGE 
Sbjct: 8   DRYWMQRAIALARRAQGRVAPNPAVGAVIVREGEVVGEGCTQPPGGPHAEIVALQRAGER 67

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGAT YVTLEPC+HYGR+PPC + I++ GIRRVV  + DP   V+GRG   L Q G+ V
Sbjct: 68  ARGATLYVTLEPCAHYGRTPPCVEAIVQAGIRRVVAAILDPFPAVAGRGFTLLRQAGVDV 127

Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +E+E    ++A YL R  E    +TLK A++ D  I      S  ITG  ++   H 
Sbjct: 128 TVGIEAEAAAEVNAGYLKRLRESLPEVTLKYAMTLDGHIATRTGHSKWITGQEARRYAHQ 187

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQ-----EHSPMRIILDPHFKLSLDSKIIKTA 240
           LR Q DAILVG+ TVL DDPELT RL+         HSP+R+++D   +    ++++ + 
Sbjct: 188 LRDQHDAILVGVETVLTDDPELTTRLDPRDAGDGGPHSPLRVVIDTRARTPPSARLLDSR 247

Query: 241 LLA-PVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295
           L A  ++I TE   P    A  K    + +   R    DL   L +L  RG+  +LVEGG
Sbjct: 248 LPARTLVITTEAAPPERVAALWKAGAELAFVPLRCGHVDLAAALRVLAERGINRVLVEGG 307

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGYLE----KNFMCVRRDYFGSDV 350
             V  S     L D+++ + + +++G    P PL  EG            VR    G D+
Sbjct: 308 GRVLGSLFEQGLADAVVAFIAPVLVGGTAAPVPLAGEGVARMEDAPRLTGVRVRQVGDDL 367

Query: 351 CLE 353
            +E
Sbjct: 368 VIE 370


>gi|260425443|ref|ZP_05779423.1| riboflavin biosynthesis protein RibD [Citreicella sp. SE45]
 gi|260423383|gb|EEX16633.1| riboflavin biosynthesis protein RibD [Citreicella sp. SE45]
          Length = 363

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 135/327 (41%), Positives = 190/327 (58%), Gaps = 7/327 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D R M+ ALR  R  +G    NP+V C+IVKDG VIGRG TA GG PHAE QAL +AG  
Sbjct: 4   DIRHMAHALRLGRRRMGQCWPNPAVGCVIVKDGRVIGRGATAPGGRPHAEPQALAQAGVA 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGAT YVTLEPC+H+G++PPCA+ +++ G+ RVV  + D D RVSG+G + L + GI V
Sbjct: 64  ARGATVYVTLEPCAHHGKTPPCAEALVKAGVARVVAPLADSDPRVSGKGFEHLRRHGIEV 123

Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              + +E     HA +  +  E R  +TLK+A S D  I  A   S  ITG  ++  VH 
Sbjct: 124 TTGVLAEEAARDHAGFFLKVGEGRPLVTLKLANSFDGRIATATGESQWITGPEARRVVHG 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRA  DA++VG GT  +DDP LT R  G +   P+R+++     + L SK+  TA   PV
Sbjct: 184 LRAAHDAVMVGAGTARSDDPALTVRGWG-EVRQPVRVVVSRLIDVPLMSKLASTARQVPV 242

Query: 246 IIVTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300
            +   +D  P    A++     +I C+ R    D   LL  L  +G+T +  EGG  +A 
Sbjct: 243 WLAHGSDAAPATRKAWQSCGAKLIPCEIRAGRVDPHGLLRELGEQGLTRVFCEGGGQLAA 302

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS 327
           S +++ LVD ++ + + + +G  G P 
Sbjct: 303 SLLSADLVDELVGFTAGLALGAEGRPG 329


>gi|154253350|ref|YP_001414174.1| riboflavin biosynthesis protein RibD [Parvibaculum lavamentivorans
           DS-1]
 gi|154157300|gb|ABS64517.1| riboflavin biosynthesis protein RibD [Parvibaculum lavamentivorans
           DS-1]
          Length = 372

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 139/333 (41%), Positives = 194/333 (58%), Gaps = 11/333 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQALE 61
           +DA+FM  AL  +   +G  + NP+V C++V+D      V+GRG T  GG PHAE +AL 
Sbjct: 5   YDAQFMKMALTLAERGLGRVAPNPAVGCVVVRDDGDGPRVVGRGWTQPGGRPHAETEALA 64

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG  ARGAT YV+LEPCSH+G++ PCA+ +I+ G+ RVV  + DP+  V+GRG   L  
Sbjct: 65  RAGALARGATVYVSLEPCSHHGKTGPCAEALIKAGVARVVGAIADPNPAVAGRGFAALEA 124

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI + + +  ++       +     EKR  +TLKIA S D  I      S  ITG  ++
Sbjct: 125 NGIEVTENVCAADAHHLNEGFFLTMSEKRPLVTLKIASSLDGYIATHEGHSQWITGDRAR 184

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            + HLLRA  DAI+VG  T + DDPELTCRL GL + SP+RII D   +L L SK+++ A
Sbjct: 185 ERGHLLRATHDAIMVGSATAIVDDPELTCRLPGLGDRSPIRIIADGRLRLPLTSKLVRDA 244

Query: 241 LLAPVIIVT-ENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEG 294
              PV I+T    D     AF    + +I  +       +++  L  +  RGVT LLVEG
Sbjct: 245 SKTPVWILTLPGGDGQRRKAFEDCGVTLIEVEAGEGGIMNMRAALEQIAARGVTRLLVEG 304

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           G+ +A S + SRLVD I  +R+  +IG  G P+
Sbjct: 305 GSRLAASLVLSRLVDRIEWFRAPKLIGGDGYPA 337


>gi|163783070|ref|ZP_02178065.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881750|gb|EDP75259.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 362

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 125/352 (35%), Positives = 199/352 (56%), Gaps = 5/352 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +MS AL  ++   GLT  NP+V C++V +G ++G G     G PHAEV ALE+AGE+
Sbjct: 3   DVGYMSLALSLAKRRKGLTHPNPTVGCVVVNEGEIVGLGYHEGAGHPHAEVVALEQAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+G+T YVTLEPC+H+GR+PPC   +I  GIR+ VV V DP+  V G+G++ L + G+ V
Sbjct: 63  AKGSTLYVTLEPCTHFGRTPPCTDALIRAGIRKAVVAVKDPNPVVGGKGIERLREAGLDV 122

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  ++E E +     + T    KR ++TLK+A + D  +      S  I+   S+   H 
Sbjct: 123 EVGVLEEEARELNEDFFTFITMKRPYVTLKLAQTLDGKVATPSGDSKWISSPESRRFAHR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR+++ A+LVG+ T L D+P LT R        P+RI++DP  ++ +DS ++    +A  
Sbjct: 183 LRSEATAVLVGLNTFLRDNPSLTIRHIPFGRQ-PLRIVIDPELEIPMDSNLVSDG-MAQT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           ++V    DP          + ++Y +  +L +LL  L  R V  LLVEGGA     F+  
Sbjct: 241 LVVFSRRDPAKESELLGAGVQLLYMEKIELGELLKELASRDVLHLLVEGGAYTVSQFLKE 300

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF-MCVRRDY-FGSDVCLEYI 355
            L D ++++++  V+G+G   S L    +     + +RR++  G D   EY+
Sbjct: 301 GLWDRLVVFQAPRVMGDGISLSGLGVDRVNDCLKLKIRREHALGEDRVFEYV 352


>gi|328952293|ref|YP_004369627.1| riboflavin biosynthesis protein RibD [Desulfobacca acetoxidans DSM
           11109]
 gi|328452617|gb|AEB08446.1| riboflavin biosynthesis protein RibD [Desulfobacca acetoxidans DSM
           11109]
          Length = 362

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 128/317 (40%), Positives = 181/317 (57%), Gaps = 6/317 (1%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ +   VG TS NP V  ++V+DG ++GRG     G PHAEV+AL +AG +A GA
Sbjct: 1   MALALKLAARGVGCTSPNPMVGAVVVRDGYIVGRGYHRRYGGPHAEVEALRQAGSQADGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
           T YVTLEPC+HYG++PPC + I+  GIRRVV+   DP+  V+G G  +L  KG++V   +
Sbjct: 61  TLYVTLEPCNHYGQTPPCTEAILAAGIRRVVIANSDPNPHVAGGGAAYLQSKGLLVQSGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +   G     A+       +  +  K A S D  I      S  ITG  ++  VH LR Q
Sbjct: 121 LAKAGSRLNEAFFKAMTIGQPFVIAKAAASLDGKIATRTNDSQWITGAPARTWVHRLRHQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DAILVG+GTV+ADDP+LT RL   Q   P+R++LD   +L L++K++     AP  +V 
Sbjct: 181 VDAILVGVGTVMADDPQLTTRLPRGQGKDPIRLVLDSRLRLPLNAKVLTQISAAPTWMVC 240

Query: 250 ENDDPVLAL-AFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
               P   + A ++    +I         +L+ LL IL  R + SLLVEGGA V  +F +
Sbjct: 241 TPSAPSEKITAIQELGAEVIITPAIENRVELRTLLKILGERRIQSLLVEGGAEVQGAFFD 300

Query: 305 SRLVDSIILYRSQIVIG 321
           + LVD   L+ +   IG
Sbjct: 301 AGLVDKFHLFLAPKFIG 317


>gi|42520555|ref|NP_966470.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410294|gb|AAS14404.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 360

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 128/327 (39%), Positives = 184/327 (56%), Gaps = 12/327 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FMS ALR +  ++G  + NP+V C+IVKDG ++  G T  GG PHAEV AL+ A + 
Sbjct: 3   DDHFMSIALRLAEKNLGNVAPNPAVGCIIVKDGTIVSEGYTGIGGRPHAEVVALQNAKDS 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GAT Y+TLEPC H+G + PC   II+  I+RVV+   DPD RVSGRG++ L + GI V
Sbjct: 63  THGATIYITLEPCCHHGVTGPCTAKIIKASIKRVVIATIDPDSRVSGRGMKALKEAGIEV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           ++ +M+ E K     + T +   R  I  K+A + D  I      S  IT   ++N VH 
Sbjct: 123 EQGIMQKEAKELNVGFFTTKELHRPFIACKVATTLDGKIATFTGDSKWITSENTRNWVHE 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR + DAI++G  T++ DDP LTCRL GL   SP+R+I+D   +L  +  I KTA     
Sbjct: 183 LRTKYDAIMIGSNTLINDDPLLTCRLPGLGSRSPIRLIIDSQGRLKEEHNIAKTADKVIT 242

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGR-GVTSLLVEGGAAVA 299
            ++T  +     +  + KNIN +  +  +     LK +   LV   G+T LLVEGG  + 
Sbjct: 243 WVITNKE-----VEKKIKNINYLVVNSSNAGKVCLKDMALKLVSEIGITRLLVEGGGVLI 297

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP 326
              +   L+D +I+ RS  ++G    P
Sbjct: 298 TELLKCNLIDRLIICRSGKILGNDATP 324


>gi|309389474|gb|ADO77354.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Halanaerobium praevalens DSM 2228]
          Length = 379

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 129/330 (39%), Positives = 192/330 (58%), Gaps = 15/330 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M  AL+ +   VG TS NP V  +IVK+G +IG G     G  HAEV AL +AG +
Sbjct: 8   DQKYMDRALKLAALAVGKTSPNPLVGAVIVKNGEIIGEGYHQKYGAQHAEVNALAKAGFK 67

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GA  +V LEPCSH+G++PPC Q II  G++RVVV + DP+ +V+GRG++ L + GI V
Sbjct: 68  AEGAELFVNLEPCSHFGKTPPCTQAIIASGLKRVVVALVDPNPQVAGRGIKQLRKAGIKV 127

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  ++ ++ K     +L     +   + LK A + D  I  +   S  IT   ++ + H 
Sbjct: 128 EIGLLAAKAKKLNEIFLKYITSELPFVYLKKAQTLDGYIATSSSDSKWITNEQARKEGHK 187

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR + DAILVGIGT+LADDP LT RL   +   P+RIILDP  ++ +D++II+    A  
Sbjct: 188 LRQKVDAILVGIGTILADDPALTTRLEKTETKDPLRIILDPLLEIPIDAQIIEQKSEAET 247

Query: 246 IIVTEND-DPVLALAFRKK--------NINIIYC-----DCRDLKKLLTILVGRGVTSLL 291
           +I+T  +  P  A+A  KK         + II       +  DLKK+L  L  + + S+L
Sbjct: 248 LIITATEFPPAQAVAKFKKKEKILKKGGVQIISFAVDANNYFDLKKILKYLHQQKIASIL 307

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           VEGGA ++HSF+  +L+D    + +  + G
Sbjct: 308 VEGGAKLSHSFLAQKLIDKFYYFIAPKIYG 337


>gi|261401666|ref|ZP_05987791.1| riboflavin biosynthesis protein RibD [Neisseria lactamica ATCC
           23970]
 gi|269208249|gb|EEZ74704.1| riboflavin biosynthesis protein RibD [Neisseria lactamica ATCC
           23970]
          Length = 369

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 126/326 (38%), Positives = 184/326 (56%), Gaps = 7/326 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL+ +      TS NP V C+I + G V+G+G     G PHAEV AL +A
Sbjct: 3   SETDISMMQNALKLAALGRFSTSPNPRVGCVIAQGGQVVGQGFHVKAGEPHAEVHALRQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   G
Sbjct: 63  GEMAKGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  ++ESE +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  
Sbjct: 123 IKTECGLLESEARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           V +LRA+S A+L GIGTVLAD+P L  R        P RI+LD   +L  +S ++     
Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRTFATLRQ-PARIVLDSRLRLPQNSHLLTDGQS 241

Query: 243 APVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGAA 297
             +I   E D+  L+   +  ++ I+      D + DL +L+ +L   G   ++VE GA 
Sbjct: 242 PTLIATLERDEGRLSPYRKHAHVRILMPSETADGKIDLHRLMRLLADEGYGEVMVEAGAK 301

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323
           +  +F+   L D I+LYRS  ++G G
Sbjct: 302 LTSAFLAEDLADEIVLYRSPKILGSG 327


>gi|58699421|ref|ZP_00374173.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225630417|ref|YP_002727208.1| riboflavin biosynthesis protein RibD [Wolbachia sp. wRi]
 gi|58534061|gb|EAL58308.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225592398|gb|ACN95417.1| riboflavin biosynthesis protein RibD [Wolbachia sp. wRi]
          Length = 360

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 128/327 (39%), Positives = 184/327 (56%), Gaps = 12/327 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FMS ALR +  ++G  + NP+V C+IVKDG ++  G T  GG PHAEV AL+ A + 
Sbjct: 3   DDHFMSIALRLAEKNLGNVAPNPAVGCVIVKDGTIVSEGYTGIGGRPHAEVVALQNAKDS 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GAT Y+TLEPC H+G + PC   II+  I+RVV+   DPD RVSGRG++ L + GI V
Sbjct: 63  THGATIYITLEPCCHHGVTGPCTAKIIKASIKRVVIATIDPDSRVSGRGMKALKEAGIEV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           ++ +M+ E K     + T +   R  I  K+A + D  I      S  IT   ++N VH 
Sbjct: 123 EQGIMQKEAKELNVGFFTTKELHRPFIACKVATTLDGKIATFTGDSKWITSENTRNWVHE 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR + DAI++G  T++ DDP LTCRL GL   SP+R+I+D   +L  +  I KTA     
Sbjct: 183 LRTKYDAIMIGSNTLINDDPLLTCRLPGLGSRSPIRLIIDSQGRLKEEHNIAKTADKVIT 242

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGR-GVTSLLVEGGAAVA 299
            ++T  +     +  + KNIN +  +  +     LK +   LV   G+T LLVEGG  + 
Sbjct: 243 WVITNKE-----VEKKIKNINYLVVNSSNAGKVCLKDMALKLVSEIGITRLLVEGGGVLI 297

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP 326
              +   L+D +I+ RS  ++G    P
Sbjct: 298 TELLKCNLIDRLIICRSGKILGNDATP 324


>gi|114771641|ref|ZP_01449045.1| riboflavin biosynthesis protein RibD [alpha proteobacterium
           HTCC2255]
 gi|114547713|gb|EAU50603.1| riboflavin biosynthesis protein RibD [alpha proteobacterium
           HTCC2255]
          Length = 365

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 131/327 (40%), Positives = 184/327 (56%), Gaps = 15/327 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D R+M  AL       G T  NP V C+IVK+ +VIGRG T  GG PHAE  AL++A  +
Sbjct: 7   DERWMRLALSLGARGAGRTWPNPFVGCVIVKNSLVIGRGYTQQGGRPHAETVALQQASND 66

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A  +T YVTLEPC+H G++PPC   +I+ GI+RVV+   DPD RVSG+G+Q L   GI V
Sbjct: 67  AENSTVYVTLEPCAHTGKTPPCVNNLIKAGIKRVVIAAIDPDHRVSGKGIQILKNAGIEV 126

Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +  E     HA + +   +KR  ++LKIA S D  I      S  +TG  S+  VH 
Sbjct: 127 SVGILKEEAEKAHAGFFSILNKKRPFLSLKIATSIDGRIATQTGNSKWLTGAESRQFVHY 186

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRA  DA+LVG GTV AD+P L  R  G   + P+RI++D + K+   S +I +A   P+
Sbjct: 187 LRATHDAVLVGRGTVEADNPSLNVRGFGRAVNQPVRIVMDSNLKIDTKSNLINSAKEIPL 246

Query: 246 IIVTENDDP--------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
            I    +           +++A + KN  I      DL+  +  L   G+T +L EGG  
Sbjct: 247 WICHAKESEFSKLSKTGAMSIACKHKNGGI------DLQDAMENLAKNGLTRILCEGGGK 300

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGG 324
           +A S +N  LVD +I+ ++ +VIG+ G
Sbjct: 301 LAASLLNENLVDELIVMQAGLVIGKEG 327


>gi|302392186|ref|YP_003828006.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           ;5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Acetohalobium arabaticum DSM 5501]
 gi|302204263|gb|ADL12941.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           ;5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Acetohalobium arabaticum DSM 5501]
          Length = 371

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 126/321 (39%), Positives = 182/321 (56%), Gaps = 6/321 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  +    G TS NP V  +IVKDG ++G+G     G PHAEV AL++A ++
Sbjct: 7   DIDYMRLALDLAAKGRGRTSPNPMVGAVIVKDGEIVGQGYHHAAGKPHAEVNALQDAADK 66

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
              AT YVTLEPCSHYG++PPC + +I  G+ RVV  + DP+ +V+GRGLQ L+  GI V
Sbjct: 67  TEDATVYVTLEPCSHYGKTPPCTKALIGAGVSRVVAAMKDPNPKVAGRGLQKLADAGIEV 126

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  ++E E K    A++     +R  + LK A++ D  I      S  I+G  S+  VH 
Sbjct: 127 ESGLLEEEAKELNEAFIKYITTERPFVILKNAMTLDGKIATKTGDSKWISGEESRRYVHR 186

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR + D ILVGIGTVL+D+P LT RL       P+RI+LD   ++ LDS ++     A  
Sbjct: 187 LRDEVDGILVGIGTVLSDNPRLTTRLPEQDGQDPIRIVLDSRLEIPLDSNLVTQESEAKT 246

Query: 246 II-VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300
           ++   E  D   A    +  + +I+   +    DL  LL  L    + SLLVEGG+ +  
Sbjct: 247 VVAAAETADEEKAAKLEEAGVEVIFLPDKQGRIDLDSLLAELGRMEIMSLLVEGGSRINT 306

Query: 301 SFINSRLVDSIILYRSQIVIG 321
           SF+ + LVD I+ + +  +IG
Sbjct: 307 SFLFTELVDKILYFIAPKLIG 327


>gi|58584287|ref|YP_197860.1| pyrimidine deaminase and reductase [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
 gi|58418603|gb|AAW70618.1| Pyrimidine deaminase and reductase [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
          Length = 378

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/342 (40%), Positives = 184/342 (53%), Gaps = 22/342 (6%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  FMS AL  +   +G  + NP+V C+IVKDG+V+G G T  GG PHAEV AL+ A  
Sbjct: 2   IDNHFMSIALSLAEKTLGNVAPNPAVGCIIVKDGVVVGEGHTGIGGRPHAEVAALQSAKG 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
              GAT YVTLEPC HYG + PC   II  GI++VVV   DPD RVSG G++ L + GI 
Sbjct: 62  STHGATMYVTLEPCCHYGVTEPCIIEIIRSGIKKVVVAAIDPDKRVSGGGIKALEEAGIT 121

Query: 126 VDR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
           V++  M E   K+ +  + TR++  R  I  KIA + D  I      S  IT   ++N V
Sbjct: 122 VEQGIMQEEAEKLNIGFFTTRKLH-RPFIACKIATTLDGKIATFKGDSKWITSGSTRNWV 180

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA--- 240
           H LRA+ DAI++G  T++ DDP LTCRL GL+  SP+R+I+D   KL     ++KTA   
Sbjct: 181 HELRAKYDAIMIGSNTLINDDPLLTCRLPGLESRSPIRLIIDSQEKLKEKHNVVKTADKV 240

Query: 241 --------------LLAPVIIVTENDDPVLAL-AFRKKNINIIYCDCRDLKKLLTILVGR 285
                              +IV  ND P+ A       N      D   LK +   LV  
Sbjct: 241 TTWVIINKKIEKKIKNINYLIVNSNDKPIPASHTGMTSNQGEYSTDKVCLKDMALKLVSE 300

Query: 286 -GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            G+T LLVEGG  +    +   L+D +I+ RS  ++G   IP
Sbjct: 301 IGITRLLVEGGRVLTTELLKHDLIDRLIICRSGKILGNDAIP 342


>gi|313200621|ref|YP_004039279.1| riboflavin biosynthesis protein ribd [Methylovorus sp. MP688]
 gi|312439937|gb|ADQ84043.1| riboflavin biosynthesis protein RibD [Methylovorus sp. MP688]
          Length = 368

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 122/325 (37%), Positives = 193/325 (59%), Gaps = 10/325 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D + M+ ALR +   +  T+ NP V C+IVKDG ++G G     G PHAEV AL +A
Sbjct: 3   SALDHQMMARALRLAEQGLYTTTPNPRVGCVIVKDGQIVGEGAHLKAGEPHAEVHALRQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G+ A+GA AYVTLEPCSH+GR+PPCA  +I+ G++RVV  + DP+ +V+G GLQ L  +G
Sbjct: 63  GDLAQGADAYVTLEPCSHHGRTPPCADALIKAGVKRVVAAMQDPNPQVAGSGLQRLQAQG 122

Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++E++ +     +++R   +R  +  KIA S D    +    S  ITG  ++  
Sbjct: 123 IAVQSGLLEAQARSLNAGFISRMTRRRPFVRSKIAASLDGATALQNGISQWITGPEARKD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTA 240
           V   RAQS  +L GIGTVLADDP+L+ R     LQ   P+R+I+D H ++S  ++I++  
Sbjct: 183 VQHWRAQSCVMLTGIGTVLADDPQLSVRDEAGELQGRQPLRVIVDSHLQISPQARILQGG 242

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGA 296
             A ++  + + D + AL   +  + +++         L  LL +L  RG+  ++VE GA
Sbjct: 243 -NALIVYGSASADRIAALC--QHGVELMHLPDHQSRVSLDSLLELLASRGINEVMVEAGA 299

Query: 297 AVAHSFINSRLVDSIILYRSQIVIG 321
            +  + ++  L+D +ILY +  ++G
Sbjct: 300 TLNGALLHGGLIDQLILYYAPKLLG 324


>gi|15614117|ref|NP_242420.1| riboflavin specific deaminase [Bacillus halodurans C-125]
 gi|10174171|dbj|BAB05273.1| riboflavin specific
           deaminase(diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase) [Bacillus halodurans C-125]
          Length = 368

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 130/330 (39%), Positives = 182/330 (55%), Gaps = 14/330 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M  AL  +    G TS NP V  ++VKDG ++G G     G PHAEV A+  AGE+
Sbjct: 3   DEQYMKLALALAESARGQTSPNPLVGAVVVKDGQIVGMGAHLKAGEPHAEVHAIRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSHYG++PPCA  +IE G+ RVV+  +DP  +VSGRG++ L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHYGKTPPCADLLIEAGVARVVIATEDPFPKVSGRGIRKLQQAGIEV 122

Query: 127 DRMMESE-----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           +  +  +      +IF H   T    KR ++T+K A + D         S  IT   ++ 
Sbjct: 123 EVGICKQEALDLNRIFFHFVRT----KRPYVTIKSATTLDGKTATVQGNSKWITSEQARE 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKT 239
            VH  R + DAILVG+GTVLAD+P LT RL   GL   +P+R+ILD   +  LD  +I  
Sbjct: 179 DVHRYRHEHDAILVGVGTVLADNPSLTTRLAAGGL---NPVRVILDRRLRTPLDRNVITD 235

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
                 I   E  D     A  +K + +       ++ +L  L  + + S+ VEGGA V 
Sbjct: 236 GKAPTWIFTEERADKAKKKALEEKGVQVFSLPNVSVEAVLETLREKNILSVFVEGGATVN 295

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
            SF+ +  VD +I Y +  V G    P+ +
Sbjct: 296 GSFVKAGTVDQVITYLAPKVFGGAAAPTAI 325


>gi|167630209|ref|YP_001680708.1| riboflavin biosynthesis protein ribd [Heliobacterium modesticaldum
           Ice1]
 gi|167592949|gb|ABZ84697.1| riboflavin biosynthesis protein ribd [Heliobacterium modesticaldum
           Ice1]
          Length = 374

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 135/329 (41%), Positives = 186/329 (56%), Gaps = 7/329 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  AL  +   +G TS NP V  ++VKDG VIG G     G PHAEV AL +AGE 
Sbjct: 5   DFSFMDRALELAALALGRTSPNPVVGAVVVKDGRVIGEGYHRKAGTPHAEVHALRQAGEA 64

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A G T YVTLEPC+H+GR+PPC + II   I RVV  V DP+ +V+G+G   L + GI V
Sbjct: 65  ACGGTLYVTLEPCNHHGRTPPCTEAIIAAKISRVVAAVADPNPQVAGQGFARLREAGIEV 124

Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  + ++  I ++  + T    KR  + LK A++ D  I  A   S  ++   S+ +VH 
Sbjct: 125 DVGVMADAAITINQPFFTWVTRKRPWVLLKWAMTADGKIATASGDSRWVSSPASRRKVHQ 184

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R + DAILVGIGTVLADDP+LT RL      +P+RII+D   +  L +K++ +A    +
Sbjct: 185 WRNRLDAILVGIGTVLADDPQLTVRLAEKDCRNPIRIIVDSKARTPLTAKVL-SAEAKTI 243

Query: 246 IIVTENDDPVLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
           I VTE        A  +    ++ C      C DL  LL  L    VTSLLVEGGA +  
Sbjct: 244 IAVTEAAPAEQVAALEQAGATVLRCPADAGGCVDLSYLLHRLACDNVTSLLVEGGARIHG 303

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPL 329
           +F++  L D   ++ +  ++G  G PSP+
Sbjct: 304 AFLDGNLADRAAIFLAPKIVGGEGAPSPV 332


>gi|253998546|ref|YP_003050609.1| riboflavin biosynthesis protein RibD [Methylovorus sp. SIP3-4]
 gi|253985225|gb|ACT50082.1| riboflavin biosynthesis protein RibD [Methylovorus sp. SIP3-4]
          Length = 368

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 122/325 (37%), Positives = 192/325 (59%), Gaps = 10/325 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D + M+ ALR +   +  T+ NP V C+IVKDG ++G G     G PHAEV AL +A
Sbjct: 3   SALDHQMMARALRLAEQGLYTTTPNPRVGCVIVKDGQIVGEGAHLKAGEPHAEVHALRQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G  A+GA AYVTLEPCSH+GR+PPCA  +I+ G++RVV  + DP+ +V+G GLQ L  +G
Sbjct: 63  GNLAQGADAYVTLEPCSHHGRTPPCADALIKAGVKRVVAAMQDPNPQVAGSGLQRLQAQG 122

Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++E++ +     +++R   +R  +  KIA S D    +    S  ITG  ++  
Sbjct: 123 IAVQSGLLEAQARSLNAGFISRMTRRRPFVRSKIAASLDGATALQNGISQWITGPEARKD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTA 240
           V   RAQS  +L GIGTVLADDP+L+ R     LQ   P+R+I+D H ++S  ++I++  
Sbjct: 183 VQHWRAQSCVMLTGIGTVLADDPQLSVRDEAGELQGRQPLRVIVDSHLQISPQARILQGG 242

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGA 296
             A ++  + + D + AL   +  + +++         L  LL +L  RG+  ++VE GA
Sbjct: 243 -NALIVYGSASADRIAALC--QHGVELMHLPDHQSRVSLDSLLELLASRGINEVMVEAGA 299

Query: 297 AVAHSFINSRLVDSIILYRSQIVIG 321
            +  + ++  L+D +ILY +  ++G
Sbjct: 300 TLNGALLHGGLIDQLILYYAPKLLG 324


>gi|255261262|ref|ZP_05340604.1| riboflavin biosynthesis protein RibD [Thalassiobium sp. R2A62]
 gi|255103597|gb|EET46271.1| riboflavin biosynthesis protein RibD [Thalassiobium sp. R2A62]
          Length = 363

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 140/332 (42%), Positives = 183/332 (55%), Gaps = 16/332 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DAR+M+ AL   R  +G    NPSV C+IVKDG V+GRG T  GG PHAE  AL  AG  
Sbjct: 3   DARWMALALELGRRGLGRVWPNPSVGCVIVKDGRVVGRGWTQDGGRPHAETHALAAAGTA 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARG+  YVTLEPCSHYG +PPCAQ +I+ G+ RV+V   D D RVSGRG   L   GI V
Sbjct: 63  ARGSDVYVTLEPCSHYGHTPPCAQALIDAGVSRVIVAAGDSDPRVSGRGYAMLRDAGICV 122

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  + ESE +  L  +  R    R  +TLK+A S D  I  A   S  ITG  ++  VH+
Sbjct: 123 DIGLCESEARNDLAGFFKRIETGRPWVTLKLANSFDGRIATASGDSQWITGADARRYVHM 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            RA+ DA++VG GTV AD+P L  R  G+    P+R++L     L  D K+  TA   PV
Sbjct: 183 SRARHDAVMVGAGTVRADNPSLNVRDLGVARQ-PIRVVLSRKLDLPTDCKLAVTAGDPPV 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDC----------RDLKKLLTILVGRGVTSLLVEGG 295
            I+  +D    A   R ++      +C           D    L  L  +G+T +  EGG
Sbjct: 242 WILHSDD----ASQSRIEDWTGHGANCLAAGPEAHRQLDPSACLQTLGAQGLTRVYCEGG 297

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
            A+A S + + L+D +I Y + + IG  G PS
Sbjct: 298 GALAASLLGAGLIDEVIGYTAGVAIGAEGTPS 329


>gi|169830807|ref|YP_001716789.1| riboflavin biosynthesis protein RibD [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637651|gb|ACA59157.1| riboflavin biosynthesis protein RibD [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 372

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 133/364 (36%), Positives = 198/364 (54%), Gaps = 23/364 (6%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M  AL  +    G TS NP V  ++V+DG ++GRG  A  G PHAE+ AL +AGE
Sbjct: 1   MDQEYMRMALDLAVRARGRTSPNPLVGAVVVRDGEIVGRGYHARAGLPHAEIVALAQAGE 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            ARG+T YV+LEPC H+GR+ PC + +I  G+RRVV  + DP+ +V+GRG+  L + G+ 
Sbjct: 61  AARGSTLYVSLEPCCHFGRTGPCTEAVIAAGVRRVVTAMRDPNPKVAGRGIARLREAGVE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           + + ++  E       ++      R  + LK+AVS D  I      S  ITG  ++   H
Sbjct: 121 VTEDVLRDEAARLNEIFIKYITTGRPFVALKVAVSLDGKIATRTGDSRWITGGPAREYAH 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR   DA+LVG GTV+ DDP LT RL G     P+RI+LD   ++   S+++     AP
Sbjct: 181 RLRDTYDALLVGRGTVVKDDPSLTTRLPG-GGRDPVRIVLDSLARIPESSRVLSGESTAP 239

Query: 245 VIIVTENDDPVLALA-FRKKNINIIYCD---CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
           VI+      P   +A    + + ++ C      DL+ LL  L  R +TS++VEGGA V  
Sbjct: 240 VIVAVTGQAPRTRVAGLESRGVQVVRCGPGPAVDLEVLLRELAAREITSVMVEGGATVHA 299

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSP-----------LEEGYLEKNFMCVRRDYFGSD 349
           SF+ +R VD +  + +  ++  GG+ +P            E   LE+    VRR   G+D
Sbjct: 300 SFLEARFVDKLHWFVAPKIV--GGVEAPGAVAGRGVGRISEAVGLER----VRRIELGND 353

Query: 350 VCLE 353
           +C+E
Sbjct: 354 LCIE 357


>gi|260575298|ref|ZP_05843298.1| riboflavin biosynthesis protein RibD [Rhodobacter sp. SW2]
 gi|259022558|gb|EEW25854.1| riboflavin biosynthesis protein RibD [Rhodobacter sp. SW2]
          Length = 357

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 131/322 (40%), Positives = 181/322 (56%), Gaps = 8/322 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL  +   +G    NP+V C+IV  G V+GRG T  GG PHAEV AL +AG  ARGA
Sbjct: 1   MAHALALAARGLGRAWPNPAVGCVIVAGGRVVGRGHTQPGGRPHAEVMALHQAGALARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DRM 129
           TAYVTLEPC+H+G +PPCA+ +I  G+ RVV  + DPD RVSG+G   L   GI V + +
Sbjct: 61  TAYVTLEPCAHHGHTPPCAEALIAAGVARVVTALTDPDPRVSGKGHALLRAAGIAVTEGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           + +E       +L R  +    +TLK+A S D  I      S  ITG +S+   H LR  
Sbjct: 121 LPAEATAANAGFLKRVTQGLPFVTLKLATSLDGRIATETGESRWITGALSRRAGHALRLS 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DA++VG GT LAD+P+LT R  G   H P+RI++D   + S  S++ +T   APV +  
Sbjct: 181 HDAVMVGAGTALADNPDLTARGLG-ANHQPVRIVIDSRLRHSPQSRLGQTTRTAPVWLCH 239

Query: 250 ENDDPVLA-LAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
               PV A  A+      +I+C         L + L  L   G+T +L EGGA +A S I
Sbjct: 240 TEAAPVDARQAWEATGARLIFCPATPEGHVALPEALRNLADLGLTRILCEGGAQLAASLI 299

Query: 304 NSRLVDSIILYRSQIVIGEGGI 325
             RL D + L+ +  ++G  G+
Sbjct: 300 RDRLADELALFGAGSLLGAEGL 321


>gi|327440271|dbj|BAK16636.1| pyrimidine deaminase [Solibacillus silvestris StLB046]
          Length = 371

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 121/321 (37%), Positives = 181/321 (56%), Gaps = 6/321 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  +    G T+ NP V  +IVKDG+++G G+    G PHAEV A+  AGE 
Sbjct: 4   DQDYMQLALELAASARGNTNPNPLVGAVIVKDGVIVGTGLHRKAGEPHAEVHAVNMAGEH 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            + AT YVTLEPCSHYG++PPCA+ + E G +RVVV  +DP+  V+GRG++ L   GI V
Sbjct: 64  TKDATIYVTLEPCSHYGKTPPCAKLLKESGFKRVVVATEDPNPEVAGRGIRLLRDAGIEV 123

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  +++ E +     ++   + +R  +  K A++ D  I      S  ITG  ++  VH 
Sbjct: 124 EVGVLQEEAQKLNERFIHNMLTERPFVVAKFAMTLDGKIATYNGHSQWITGEEARADVHE 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
           LR + D ILVG+ TVL D+P+LT RLN   Q  +P+R++LD   K  +D+ I  T     
Sbjct: 184 LRHEVDGILVGVQTVLNDNPKLTTRLNDDRQGRNPIRVVLDSTLKTPVDAHIADTTDART 243

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
           +I+ + + D   A    +  + II  D       ++ +L  L  +G+T LLVEGG  V  
Sbjct: 244 IIVTSLDSDEEKAQQLERNGVEIIRVDKEKTGLHIEDMLKALYKKGITHLLVEGGGNVNA 303

Query: 301 SFINSRLVDSIILYRSQIVIG 321
           SF+    +D  I+Y +  V+G
Sbjct: 304 SFLRGGFIDQYIVYIAPKVLG 324


>gi|288818291|ref|YP_003432639.1| riboflavin biosynthesis protein [Hydrogenobacter thermophilus TK-6]
 gi|288787691|dbj|BAI69438.1| riboflavin biosynthesis protein [Hydrogenobacter thermophilus TK-6]
 gi|308751888|gb|ADO45371.1| riboflavin biosynthesis protein RibD [Hydrogenobacter thermophilus
           TK-6]
          Length = 361

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 141/355 (39%), Positives = 196/355 (55%), Gaps = 9/355 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  AL  ++   GLT  NP+V C+IVKDG +I  G     G PHAE  ALE+AG +
Sbjct: 6   DHHFMRRALELAKLRKGLTHPNPTVGCVIVKDGKIIAEGYHEKVGMPHAEAVALEKAGTQ 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A G+T YVTLEPC+HYGR+PPC   II   ++RVV+   DP+  VSGRG+Q L   GI V
Sbjct: 66  AEGSTLYVTLEPCTHYGRTPPCTDAIIRAKVKRVVIATLDPNPLVSGRGVQKLRDAGIDV 125

Query: 127 -DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E +     + T   +KR +ITLK+A S D  I      S  IT   S+   H 
Sbjct: 126 CVGVLEDEARELNEDFFTYITQKRPYITLKLAQSIDGRIATKHGESQWITNQESRTFAHR 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ+ A+LVGI TVL DDP LT R +   E  P+R++LDP+ ++ + SK+++    A  
Sbjct: 186 LRAQATAVLVGINTVLRDDPSLTVR-HIPWESQPIRVVLDPNLRIPITSKLVREK-TAKT 243

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHS 301
           +I+T +++         + I ++     +    L+++L  L    +  LLVEGGA    S
Sbjct: 244 LIITASENREKMKILEDEGIKVLLAPAEEGKLILREVLRELYFMEIMHLLVEGGAQTITS 303

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL--EKNFMCVRRDYFGSDVCLEY 354
           FI   L D + ++ + I+IGEG     +    L   K  M      FG DV LEY
Sbjct: 304 FIKEDLYDRLFIFLAPILIGEGIGIGDIGTSKLLDAKRHMLKSIYRFGDDVGLEY 358


>gi|295399034|ref|ZP_06809016.1| riboflavin biosynthesis protein RibD [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312110361|ref|YP_003988677.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y4.1MC1]
 gi|294978500|gb|EFG54096.1| riboflavin biosynthesis protein RibD [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215462|gb|ADP74066.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y4.1MC1]
          Length = 361

 Score =  219 bits (558), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 124/330 (37%), Positives = 186/330 (56%), Gaps = 12/330 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M  A+  ++  +G TS NP V  ++V  G ++G G     G PHAEV A+  AGE+
Sbjct: 4   DEQYMRLAIEMAKAGIGQTSPNPIVGAVVVNSGEIVGFGAHLKAGEPHAEVHAIRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-- 124
           A+GAT YVTLEPCSHYG++PPCA  +I+ G+RRVV+   DP+  V+G+G++ L   GI  
Sbjct: 64  AKGATVYVTLEPCSHYGKTPPCADLLIDAGVRRVVIATTDPNPLVAGKGIEKLRNAGIDV 123

Query: 125 ---IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
              ++    +   ++F H   T    K   +TLK A S D  I  A   S  IT   ++ 
Sbjct: 124 KLGVLKEEADELNRVFFHYIAT----KTPFVTLKYASSLDGKIATATGESKWITSEAARE 179

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH  RA  DAILVG+ TV+AD+P LT RL G  + +P+RI+LD H +  L++ I++   
Sbjct: 180 DVHRYRAVHDAILVGVDTVIADNPSLTVRLPGSGK-NPIRIVLDTHLRTPLEANILQDGQ 238

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVA 299
               +I            +  KN+ +I       ++ +LL +L  R +TSL VEGG+ V 
Sbjct: 239 AETWLIAGSGVSGEKKKRYESKNVQVISMSTPHINIDELLHVLGERRITSLFVEGGSRVH 298

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
            SF+ +  V+ I+ Y +  +IG    P+P+
Sbjct: 299 DSFVRAGAVNEIVAYFAPKLIGGKQAPTPI 328


>gi|254511482|ref|ZP_05123549.1| riboflavin biosynthesis protein RibD [Rhodobacteraceae bacterium
           KLH11]
 gi|221535193|gb|EEE38181.1| riboflavin biosynthesis protein RibD [Rhodobacteraceae bacterium
           KLH11]
          Length = 358

 Score =  219 bits (558), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 129/323 (39%), Positives = 185/323 (57%), Gaps = 7/323 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL   R   G    NP+V C+IV+DG ++GRG T  GG PHAE QAL +AGE A+GA
Sbjct: 1   MALALSLGRRGQGNCWPNPAVGCVIVRDGRIVGRGWTQPGGRPHAEPQALAQAGEAAKGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           TAYV+LEPCSHYG++PPCAQ +I  G+ RVV  ++D D RV+G+G   L   GI V   +
Sbjct: 61  TAYVSLEPCSHYGKTPPCAQVLIGAGVARVVSAIEDSDPRVAGQGFDMLRAAGIEVTSGV 120

Query: 131 ESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            +E     HA +  +  + R  +TLK+A S D  I      S  ITG +++  VH +RA+
Sbjct: 121 LAEQAAQDHAGFFLKTEQGRPFVTLKLASSFDGRIATETGHSQWITGPMARRAVHAMRAR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV- 248
            DA++VG GT  ADDP LT R  G+  H P+R+++  H  + L   + +TA   PV +  
Sbjct: 181 HDAVMVGAGTARADDPSLTVRDLGV-THQPVRVVVSRHLDVPLMGHLARTATQMPVWLCH 239

Query: 249 TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
             + D   A A+      +I C       +   LL  L   G+T +  EGG+A+A S + 
Sbjct: 240 GPHPDAERARAWEGLGARLIPCALDGHHVEAADLLQQLGQAGLTRVFCEGGSALAASLLA 299

Query: 305 SRLVDSIILYRSQIVIGEGGIPS 327
             LVD ++ + + + IG  G+P+
Sbjct: 300 GDLVDELVGFTAGLAIGAEGLPA 322


>gi|261365730|ref|ZP_05978613.1| riboflavin biosynthesis protein RibD [Neisseria mucosa ATCC 25996]
 gi|288565756|gb|EFC87316.1| riboflavin biosynthesis protein RibD [Neisseria mucosa ATCC 25996]
          Length = 365

 Score =  219 bits (558), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 132/326 (40%), Positives = 183/326 (56%), Gaps = 11/326 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D + M  AL  +R     TS NP V C+I   G ++G+G     G PHAEV AL +AGE
Sbjct: 5   IDTQMMQNALALARLGRFSTSPNPRVGCVIAHGGQIVGQGFHVKAGEPHAEVHALRQAGE 64

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            ARGATAYVTLEPCSHYGR+PPCA+ +I  G+ RVV  + DP+  V+G+GL  L   GI 
Sbjct: 65  MARGATAYVTLEPCSHYGRTPPCAEALISSGVSRVVAAMTDPNPLVAGKGLAMLEAAGIR 124

Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
            +  ++E+E +     +L+R    R  + +K A S D    +A   S  ITG  ++  V 
Sbjct: 125 TESGLLEAEARELNRGFLSRIERGRPFVRIKCAASLDGKTALADGRSYWITGEAARADVQ 184

Query: 185 LLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
            LRA+S A+L GIGTVLAD+P L  R    L++  P RI+LD   +  L S ++    L+
Sbjct: 185 TLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSKLQTPLGSHMVSDD-LS 241

Query: 244 PVIIVTENDDPVLALAFRK-KNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAA 297
           P +IVT  DD      +R   +I I+          DL  LL  L   G   ++VE GA 
Sbjct: 242 PTVIVTAVDDEERLKPYRAFHHIRILRSSENAAGRIDLAALLPQLAELGYGEIMVEAGAT 301

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323
           +  +FI + L D I+LY++  ++GEG
Sbjct: 302 LTSAFIEAGLADEIVLYQAPKILGEG 327


>gi|125972628|ref|YP_001036538.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Clostridium thermocellum ATCC 27405]
 gi|125712853|gb|ABN51345.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Clostridium
           thermocellum ATCC 27405]
          Length = 365

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 135/358 (37%), Positives = 199/358 (55%), Gaps = 17/358 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FMS A++ ++   G T+ NP V  ++VKDG +I  G     G PHAEV+A   A E+  G
Sbjct: 7   FMSRAIKLAKLGWGKTNPNPLVGAVVVKDGKIIAEGYHKQLGGPHAEVEAFNNAKEDVAG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            T YV LEPCSHYGR+PPCAQ II+ GI++VV  + DP+ +VSGRG + L   GI V+  
Sbjct: 67  GTLYVNLEPCSHYGRTPPCAQKIIDVGIKKVVAAIKDPNPKVSGRGFEMLKNAGIEVEVG 126

Query: 130 MESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +  E  I L+  ++T  V+K+  + LK A++ D  I  A   S  +TG  ++N VH++R 
Sbjct: 127 VLEEEAIRLNEIFITYIVKKKPFVILKTAMTLDGKIATASGDSKWVTGEKARNHVHVIRD 186

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           +  A++VGI TVL D+P LT RL   +   P+RI++D    + LDS +I +   A VI+ 
Sbjct: 187 RVAAVMVGINTVLKDNPYLTTRLPDKEGSDPVRIVVDSKGSIPLDSNVINSNSKAGVILA 246

Query: 249 TEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           T +  D         K + II  D      DLK L+  L    + S+L+EGG  +  S I
Sbjct: 247 TTSRIDKEKEKMLIDKGVKIIKADGSDGRVDLKLLMDELYKLEIDSVLLEGGGTLNSSAI 306

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLE--------EGYLEKNFMCVRRDYFGSDVCLE 353
           ++ +VD ++ + S  ++G    P+ +E        E    KN   V+   FG D+ LE
Sbjct: 307 SAGIVDKVMCFISPKIVGGENAPTSVEGIGALRMCEAIGVKNISVVK---FGEDILLE 361


>gi|256004715|ref|ZP_05429691.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum DSM
           2360]
 gi|281416820|ref|ZP_06247840.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum
           JW20]
 gi|255991308|gb|EEU01414.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum DSM
           2360]
 gi|281408222|gb|EFB38480.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum
           JW20]
 gi|316941134|gb|ADU75168.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum DSM
           1313]
          Length = 368

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 135/358 (37%), Positives = 199/358 (55%), Gaps = 17/358 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FMS A++ ++   G T+ NP V  ++VKDG +I  G     G PHAEV+A   A E+  G
Sbjct: 10  FMSRAIKLAKLGWGKTNPNPLVGAVVVKDGKIIAEGYHKQLGGPHAEVEAFNNAKEDVAG 69

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            T YV LEPCSHYGR+PPCAQ II+ GI++VV  + DP+ +VSGRG + L   GI V+  
Sbjct: 70  GTLYVNLEPCSHYGRTPPCAQKIIDVGIKKVVAAIKDPNPKVSGRGFEMLKNAGIEVEVG 129

Query: 130 MESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +  E  I L+  ++T  V+K+  + LK A++ D  I  A   S  +TG  ++N VH++R 
Sbjct: 130 VLEEEAIRLNEIFITYIVKKKPFVILKTAMTLDGKIATASGDSKWVTGEKARNHVHVIRD 189

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           +  A++VGI TVL D+P LT RL   +   P+RI++D    + LDS +I +   A VI+ 
Sbjct: 190 RVAAVMVGINTVLKDNPYLTTRLPDKEGSDPVRIVVDSKGSIPLDSNVINSNSKAGVILA 249

Query: 249 TEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           T +  D         K + II  D      DLK L+  L    + S+L+EGG  +  S I
Sbjct: 250 TTSRIDKEKEKMLIDKGVKIIKADGSDGRVDLKLLMDELYKLEIDSVLLEGGGTLNSSAI 309

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLE--------EGYLEKNFMCVRRDYFGSDVCLE 353
           ++ +VD ++ + S  ++G    P+ +E        E    KN   V+   FG D+ LE
Sbjct: 310 SAGIVDKVMCFISPKIVGGENAPTSVEGIGALRMCEAIGVKNISVVK---FGEDILLE 364


>gi|313669033|ref|YP_004049317.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/phosphoribosylaminouracil reductase [Neisseria
           lactamica ST-640]
 gi|313006495|emb|CBN87958.1| putative diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/phosphoribosylaminouracil reductase [Neisseria
           lactamica 020-06]
          Length = 369

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 127/327 (38%), Positives = 186/327 (56%), Gaps = 9/327 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL+ +      TS NP V C+I + G ++G+G     G PHAEV AL +A
Sbjct: 3   SETDISMMQNALKLAALGRFSTSPNPRVGCVIAQGGQIVGQGFHVKAGEPHAEVHALRQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVVV + DP+  V+G+GL  L   G
Sbjct: 63  GEMAKGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVVAMRDPNPLVAGKGLALLEAAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  ++ESE +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  
Sbjct: 123 IKTECGLLESEARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V +LRA+S A+L GIGTVLAD+P L  R    L++  P RI+LD   +L  +S ++    
Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPNSHLVTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296
               I   E ++  L       ++ I+      D + DL +L+ +L   G   ++VE GA
Sbjct: 241 SPTYIATLERNEDKLRPYREHAHVRILMPSETADGKIDLHRLMRLLADEGYGEVMVEAGA 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +A +F+   L D I+LYRS  ++G G
Sbjct: 301 KLASAFLAEDLADEIVLYRSPKILGSG 327


>gi|315634417|ref|ZP_07889704.1| riboflavin biosynthesis protein RibD [Aggregatibacter segnis ATCC
           33393]
 gi|315477007|gb|EFU67752.1| riboflavin biosynthesis protein RibD [Aggregatibacter segnis ATCC
           33393]
          Length = 374

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 134/337 (39%), Positives = 188/337 (55%), Gaps = 21/337 (6%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P S  DA FM  AL  ++     T+ NPSV C++VKDG V+G+G  A  G PHAEV AL 
Sbjct: 4   PFSPQDAAFMQLALDLAKQGEFTTTPNPSVGCVLVKDGEVVGKGFHAKAGEPHAEVMALR 63

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           EAGE+ARGATAYVTLEPCSH+GR+PPCA+ ++E G+ +V+  + DP+ +V+G+GLQ LS 
Sbjct: 64  EAGEKARGATAYVTLEPCSHFGRTPPCAKGLVEAGVSKVIAAMCDPNPQVAGKGLQILSD 123

Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI     ++E   +     +L R    +  + LK+A+S D    MA   S  ITG  ++
Sbjct: 124 AGIQSAVGLLEENAEQLNKGFLKRMRTGKPFVQLKLAMSIDGKTAMASGESKWITGAQAR 183

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL---------QE--HSPMRIILDPHFK 229
             V   RA++ AIL    TVLADDP L  R   L         QE    P+R+ILD   K
Sbjct: 184 ADVQQYRAKASAILSTSQTVLADDPSLNVRWEELPLDVKASYAQEKLRQPVRVILDSSHK 243

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGR 285
           +  D K+  T   +PV +V E D    +L       + +  D       L+ L+  L  R
Sbjct: 244 VRSDFKVFSTE--SPVWLVGEED---YSLTDFPPFTDYLKLDRNQGETRLQSLMAELGKR 298

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
            + +L VE GA +A + I   LVD +I+Y +  ++G+
Sbjct: 299 QINTLWVEAGATLAGALIAENLVDELIIYMAPKLLGD 335


>gi|148264237|ref|YP_001230943.1| riboflavin biosynthesis protein RibD [Geobacter uraniireducens Rf4]
 gi|146397737|gb|ABQ26370.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Geobacter uraniireducens Rf4]
          Length = 368

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 133/366 (36%), Positives = 200/366 (54%), Gaps = 11/366 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           F  + M  A+  ++  +G T+ NP+V C+IVKDG V+G G     G PHAEV AL +AGE
Sbjct: 4   FHEKMMKRAIVLAKRGIGRTAPNPTVGCVIVKDGAVVGEGWHKKAGTPHAEVHALRQAGE 63

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            ARGA  YVTLEPC+H+G++PPCA  +I   + RV + + DP+ RV G G+  L   GI 
Sbjct: 64  MARGADVYVTLEPCAHFGKTPPCADALIAAKVCRVHIGMVDPNPRVCGEGISMLRSAGIE 123

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V  ++E   +     ++         + LK A++ D     AG  S  IT   S+  VH
Sbjct: 124 VVVSVLEDNCRSLNEPFIKHMTTGLPFVILKSAMTLDGKTATAGKDSKWITSDKSRQYVH 183

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LRA+ DAI+VG+GTV+ADDP LT R+   ++  P+R+I+D   ++ L S+++     A 
Sbjct: 184 KLRAKLDAIMVGVGTVMADDPLLTSRIPAGRD--PLRVIVDSTLRIPLSSQVLHVDSPAK 241

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300
            +I T +DD   A        +++ C  +    DL  L   L G GV SLL+EGG A+A 
Sbjct: 242 TVIATISDDEAQAARITASGADVLRCRQKNGRVDLHDLFVKLGGLGVQSLLLEGGGALAG 301

Query: 301 SFINSRLVDS-IILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR---DYFGSDVCLEYIG 356
             +   L+D  +  Y  ++V GEG  P   +   L  + + ++       GSD+ ++   
Sbjct: 302 EALRCGLIDKCMFFYAPKLVGGEGLGPFSGKGVELMADAITLKNISITKIGSDILVQGYP 361

Query: 357 KNLCLQ 362
           +N CLQ
Sbjct: 362 ENACLQ 367


>gi|212634188|ref|YP_002310713.1| riboflavin biosynthesis protein RibD [Shewanella piezotolerans WP3]
 gi|212555672|gb|ACJ28126.1| Riboflavin biosynthesis protein RibD [Shewanella piezotolerans WP3]
          Length = 373

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 131/336 (38%), Positives = 198/336 (58%), Gaps = 18/336 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D + MS A+  ++  +  T  NP V  +IVKD +++G G     G PHAEV AL  A
Sbjct: 3   STEDNQMMSLAIELAQKGLYTTRPNPCVGSVIVKDSVIVGEGYHIRAGGPHAEVYALNMA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G +A+GATAYVTLEPCSHYGR+PPCA+ +IE G+ RVVV V DP+ +VSGRG+  L   G
Sbjct: 63  GNDAKGATAYVTLEPCSHYGRTPPCAKALIEAGVSRVVVAVTDPNPQVSGRGIAMLQDAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I VD  ++    K     +L R  +    +T+K+A S D    ++   S  ITG  ++  
Sbjct: 123 IQVDVGLLTDAAKQVNLGFLKRMQQGLPWVTVKLAASLDGKTALSNGESKWITGPEARRD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSL 232
           V  +RA+  A++ G+ TVLAD+P L  R + L          + H P+R+ILD   +  L
Sbjct: 183 VQRIRARHCALITGVETVLADNPSLNVRHSELGSLSNEIAPAEVHQPLRVILDSQAR--L 240

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN---IIYCDCR-DLKKLLTILVGRGVT 288
           D+++   ++ +PV++V+  D P    +    +++   +   D R +L+ LLT+L G+   
Sbjct: 241 DAELAIFSVTSPVLLVSTRDYPESVKSAWPAHVSHQVLPATDNRVELQALLTLL-GKTCN 299

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           S+LVE GA +A +F+ S  VD IILY++  ++G GG
Sbjct: 300 SVLVEAGATLAGAFVASHCVDEIILYQAMKILGAGG 335


>gi|313889107|ref|ZP_07822763.1| riboflavin biosynthesis protein RibD [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312844847|gb|EFR32252.1| riboflavin biosynthesis protein RibD [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 371

 Score =  218 bits (556), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 133/331 (40%), Positives = 186/331 (56%), Gaps = 11/331 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D  +M  AL  +R   G T TNP V C+IVKD  +IG+G     G  HAEV A+ +A   
Sbjct: 8   DIFYMERALEIAREGTGKTKTNPLVGCVIVKDDKIIGQGAHLKFGENHAEVNAILDAKSR 67

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE+ RGAT YV LEPCSHYG++PPCA+ I++ GIRRVV+   DP  +VSGRG++ L   G
Sbjct: 68  GEDIRGATLYVNLEPCSHYGKTPPCAERIVKEGIRRVVIGTADPFEKVSGRGIKILEDAG 127

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I + + + E E       + T    KR  + LK  +S D  I      S  IT   S+  
Sbjct: 128 ISVTEGLCEEECLNLNERFFTYLKNKRPFVVLKSGMSLDGKIATESGESKWITSEFSRAH 187

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H LR Q DAI+VGIGTVLADDP L  R +   +++P+RII D   ++ LD+K+++  L 
Sbjct: 188 GHELRGQLDAIMVGIGTVLADDPSLNTR-HCKYKNNPIRIITDSSLRIPLDAKVLRDDLD 246

Query: 243 APVIIVTEN--DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
           +  II T    D   L      KN+ +I C  +    DLK L+  L    ++S+L+EGG 
Sbjct: 247 SIAIIATTESCDKDKLEKLKAMKNVEVIICKEKDKRVDLKDLMEKLKDYDISSILLEGGR 306

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
            +    + + LVD    + + I++G  GIP+
Sbjct: 307 TLNAEMLKNNLVDKFYFFIAPILLGSKGIPA 337


>gi|320529850|ref|ZP_08030927.1| riboflavin biosynthesis protein RibD [Selenomonas artemidis F0399]
 gi|320137868|gb|EFW29773.1| riboflavin biosynthesis protein RibD [Selenomonas artemidis F0399]
          Length = 369

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 131/358 (36%), Positives = 193/358 (53%), Gaps = 7/358 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  AL  + +  G TS NP V  +IV+DGIV+G G     G PHAE+ AL  AGE 
Sbjct: 8   DEHFMWEALHLAEFARGRTSPNPLVGAVIVRDGIVVGSGWHRVAGEPHAEIHALRMAGEL 67

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGAT YVTLEPCSH+GR+ PCA+ +I  GI RVV  + DP+  V+G G++ L   GI +
Sbjct: 68  ARGATLYVTLEPCSHHGRTGPCAEAVIAAGIARVVTALSDPNPVVAGHGIERLRAAGIEV 127

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++  E +     +L   V KR  +TLK A++ D         S  ITG  ++ +VH 
Sbjct: 128 TTGVLSEEARRQNEVFLKWVVTKRPFVTLKTAMTLDGKTASRTGASQWITGAEARTRVHE 187

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVGIGTVLADDP LT RL      +P+R++LD   +   D+K++       +
Sbjct: 188 WRDAHDAILVGIGTVLADDPSLTVRLPHRTGKNPVRVVLDSTARTPHDAKLLTDGAARTI 247

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           I V+E   P      +     ++       D+  L+  L    +TS+ VEGGA+V  SF+
Sbjct: 248 IAVSERAAPKRTALLQACGAEVVTFGRERVDIPALMDFLGREELTSVFVEGGASVHWSFL 307

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           ++ LVD +  + + +++G    P+ +     E     +R     +D  +E +G ++ +
Sbjct: 308 SAGLVDKVCAFIAPMLMGGADAPTAVGGAGFESPQTALRL----TDTTVEQVGADILM 361


>gi|84687686|ref|ZP_01015559.1| riboflavin biosynthesis protein RibD [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84664269|gb|EAQ10760.1| riboflavin biosynthesis protein RibD [Rhodobacterales bacterium
           HTCC2654]
          Length = 367

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 138/328 (42%), Positives = 186/328 (56%), Gaps = 9/328 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM  AL   R  +G    NP+V C+IV    ++GRG T  GG PHAEV AL +AGE 
Sbjct: 3   DERFMDLALSLGRRGLGSVWPNPAVGCVIVNGARIVGRGWTQPGGRPHAEVVALAQAGEA 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSH+G++PPCA  +I  GI RVVV + DPD RV+GRG+  L   GI +
Sbjct: 63  ARGATAYVTLEPCSHHGQTPPCAVALISAGIARVVVALGDPDNRVNGRGIAMLRAAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  + E+E +     +L+R    R  +TLK+A S D  I  A   S  ITG  ++ QVH 
Sbjct: 123 VTGLGEAEARADQVGFLSRVERGRPMVTLKLAASLDGRIATATGESQWITGPEARRQVHA 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DA++VG GT  ADDP LT R  G +   P+R++L  H  + LDS + +TA   PV
Sbjct: 183 ERMIHDAVMVGAGTARADDPSLTVRGLGARRQ-PVRVVLSRHLDIPLDSVLARTAKEVPV 241

Query: 246 IIVTENDDP--VLA----LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
            ++  +  P  V+A    L  R   + ++     D+   L  L   G+T +  EGG  +A
Sbjct: 242 WLIHGDRAPDGVVAAWEGLGARCIAVPVVLGRI-DVAAALAALGAAGLTRVFCEGGGGLA 300

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS 327
            S +   LVD  + + + I +G  G PS
Sbjct: 301 ASLLAEGLVDEYVGFTAGIALGAEGWPS 328


>gi|254467350|ref|ZP_05080761.1| riboflavin biosynthesis protein RibD [Rhodobacterales bacterium
           Y4I]
 gi|206688258|gb|EDZ48740.1| riboflavin biosynthesis protein RibD [Rhodobacterales bacterium
           Y4I]
          Length = 365

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 140/358 (39%), Positives = 194/358 (54%), Gaps = 11/358 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D R+M+ AL   R   G    NP+V C+IVK   ++GRG T  GG PHAE +AL +AGE 
Sbjct: 4   DHRYMALALSLGRRGQGNCWPNPAVGCVIVKGRRIVGRGWTKPGGRPHAETEALAQAGEA 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPC+H G +PPCAQ +I+ G+ RVV  + D D RVSG+G++ L   GI V
Sbjct: 64  ARGATAYVTLEPCAHQGATPPCAQALIKAGVARVVAAIGDSDPRVSGQGIRMLRDAGIRV 123

Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  +        HA +  +  + R  +TLK+A S D  I      S  ITG  ++  VH 
Sbjct: 124 DTGVWGAQAARDHAGFFLKTEQGRPLVTLKLASSFDGRIATGSGKSKWITGPEARRAVHA 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +RA+ DA++VG GT  ADDP LT R  G+ E  P+R+++  H  L L  ++ +TA   PV
Sbjct: 184 MRARHDAVMVGGGTARADDPSLTVRDLGV-ERQPVRVVISRHLDLPLMGQLARTAKKVPV 242

Query: 246 IIV-TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300
            +      D     A+      +I C       D   +L  L   G+T +  EGG+A+A 
Sbjct: 243 WLCHGHGADQERIQAWEGLGAKLIPCASHGVQLDAVDVLQQLGQAGLTRVFCEGGSALAA 302

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS--PLEEGYLEK--NFMCVRRDYFGSDVCLEY 354
           S +   LVD +I + + + IG  G+PS   L  G LE+   F  V     G D+   +
Sbjct: 303 SLLAFDLVDELIGFTAGLGIGAEGLPSIGALGIGRLEEAPRFELVETRPLGGDILHRW 360


>gi|86137887|ref|ZP_01056463.1| riboflavin biosynthesis protein RibD [Roseobacter sp. MED193]
 gi|85825479|gb|EAQ45678.1| riboflavin biosynthesis protein RibD [Roseobacter sp. MED193]
          Length = 357

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 131/323 (40%), Positives = 188/323 (58%), Gaps = 7/323 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL   R   G    NP+V C++V++G ++GRG T  GG PHAEV AL +AG+ ARGA
Sbjct: 1   MALALSLGRRGQGNCWPNPAVGCVLVREGRIVGRGWTQPGGRPHAEVAALAQAGKLARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           TA+VTLEPCSH+G++PPCAQ +I+ GI R+V  V D D RVSG+G + L Q GI V+  +
Sbjct: 61  TAFVTLEPCSHHGKTPPCAQALIDAGIARLVAAVGDSDPRVSGQGFEMLRQAGIEVEVGV 120

Query: 131 ESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            SE     HA +  +  + R  +TLK+A S D  I      S  ITG  ++  VH +RA+
Sbjct: 121 LSEEAARDHAGFFYKTEQGRPFVTLKMASSFDGRIATGTGQSKWITGPEARRAVHAMRAR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV- 248
            DA++VG GT  ADDP LT R  G+  H P+R+++  H  L L S++  +A   P+ +  
Sbjct: 181 HDAVVVGAGTARADDPSLTVRDLGV-AHQPVRVVISRHLDLPLISQLATSASKVPLWLCH 239

Query: 249 TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
            +  D     A+      ++ C  R    D   +L  L   G+T +  EGG+A+A S + 
Sbjct: 240 GQGADVERKQAWEGLGARLLPCASRGVQLDPHDVLQQLGAAGLTRVFCEGGSALAASLLA 299

Query: 305 SRLVDSIILYRSQIVIGEGGIPS 327
             LVD +I + + + IG  G+PS
Sbjct: 300 FDLVDELIGFTAGLGIGAEGLPS 322


>gi|39996788|ref|NP_952739.1| riboflavin biosynthesis protein RibD [Geobacter sulfurreducens PCA]
 gi|39983676|gb|AAR35066.1| riboflavin biosynthesis protein RibD [Geobacter sulfurreducens PCA]
 gi|307634902|gb|ADI84522.2| 2,5-diamino-6-(5'-phosphoribosylamino)-4-(3H)-pyrimidinone
           deaminase and 5-amino-6-(5'-phosphoribosylamino)uracil
           reductase [Geobacter sulfurreducens KN400]
          Length = 369

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 199/368 (54%), Gaps = 12/368 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++SF    M  AL  +R  +G TS NP V C+IV++G+V+G G     G PHAEV AL E
Sbjct: 1   MTSFHENMMRRALSLARKGIGKTSPNPVVGCVIVREGVVVGEGWHRKAGTPHAEVHALRE 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  ARGA  YVTLEPCSH+GR+PPCA  ++  G+ RV V + DP+  V G+G+  L   
Sbjct: 61  AGPLARGADVYVTLEPCSHFGRTPPCADALVAAGVARVFVGMVDPNPTVCGKGITRLEAV 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI ++  ++  E ++    ++         +TLK A++ D     A   S  IT   S+ 
Sbjct: 121 GIQVITGVLGKECRLINEPFVKHVSTGLPFLTLKSALTLDGKTATALGDSRWITNDKSRR 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH LRA+ DA++VG+GT+LAD+PELT R   ++  +P+RII+D   K+  +S+++   L
Sbjct: 181 YVHQLRAEVDAVMVGVGTLLADNPELTVRH--VKGKNPLRIIVDSSLKIPNESRVLGDDL 238

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
               II T +DD         +   +I C       DL+ L+  L  +G+ S+L+EGG+ 
Sbjct: 239 ARGTIIATTSDDQERIGFLETRGAQVIRCASDKGRVDLRDLMQRLGAKGIQSILLEGGSE 298

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
           +A + +   L+D  IL+ + IV+G            +E+          R   FG DV +
Sbjct: 299 LAGAALRQGLIDKFILFYAPIVLGGAAGIGLFGGKSVERMGRAFRLETARVRRFGGDVMI 358

Query: 353 EYIGKNLC 360
           E   +  C
Sbjct: 359 EAYPEEAC 366


>gi|118580019|ref|YP_901269.1| riboflavin biosynthesis protein RibD [Pelobacter propionicus DSM
           2379]
 gi|118502729|gb|ABK99211.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pelobacter
           propionicus DSM 2379]
          Length = 367

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 121/328 (36%), Positives = 187/328 (57%), Gaps = 8/328 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D R M  AL  +R  +G TS NP+V C+IVKDG+++G G     G  HAE+ ALE AGE 
Sbjct: 4   DIRQMKRALALARRGIGKTSPNPAVGCVIVKDGVIVGTGWHRKAGTSHAEIHALEMAGES 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGA  +VTLEPC H G++PPC+Q +I  G+RRVV  + DP+ RVSG GL  L   GI +
Sbjct: 64  ARGADVFVTLEPCCHTGKTPPCSQALIRAGVRRVVAGMSDPNPRVSGGGLAELETAGIQV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++E E +     ++ +      H+T K A++ D  I      S  I+   S+  VH 
Sbjct: 124 VCGVLEKECRDLNRPFIKQVTTGMPHVTYKCAMTLDGKIATVSGASRWISCQESRTLVHR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +RA+ DAI+VG+ T++ADDP+LT R   ++  +P+R+++D   +     +++        
Sbjct: 184 MRARMDAIMVGVDTIIADDPQLTVRH--VRGRNPLRVVVDTRLRTPESVRVLGDGNAVNT 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHS 301
           +I T   +P + L ++ +   I+ CD  +    +K L+  L  RGV S+L+EGG  +A S
Sbjct: 242 LIATAETNPRVHLRYQNQGATILVCDQENGRVSMKDLMFKLGKRGVQSILLEGGGRLAGS 301

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPL 329
            +   L+D  + + +  ++G  G  SP 
Sbjct: 302 MLEQGLIDEFVFFLAPKILGSDGF-SPF 328


>gi|163742965|ref|ZP_02150348.1| riboflavin biosynthesis protein RibD [Phaeobacter gallaeciensis
           2.10]
 gi|161383648|gb|EDQ08034.1| riboflavin biosynthesis protein RibD [Phaeobacter gallaeciensis
           2.10]
          Length = 372

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 133/327 (40%), Positives = 186/327 (56%), Gaps = 7/327 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DARFMS AL   R  +G    NP+V C+IV+DG ++GRG T  GG PHAE QAL++AG+ 
Sbjct: 11  DARFMSLALSLGRRGLGNCWPNPAVGCVIVRDGRIVGRGWTQPGGRPHAEPQALQQAGDL 70

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGAT YV+LEPCSH G++PPCAQ +I  G  RVV  ++D D RVSG G   L   GI V
Sbjct: 71  ARGATVYVSLEPCSHTGKTPPCAQALINAGAARVVAAIEDSDPRVSGHGFAMLRDAGIPV 130

Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              + S+   + HA +  +  + R  +TLK+A S D  I  A   S  ITG  ++  VH 
Sbjct: 131 TTGVCSDVAAWDHAGFFLKTEQGRPFVTLKLASSFDGRIATAAGESKWITGSEARRAVHA 190

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +RA+ DA++VG GT  ADDP LT R  G+    P+R+++  H  L L  ++ ++A   PV
Sbjct: 191 MRARHDAVMVGGGTARADDPSLTVRDLGVARQ-PVRVVISRHLDLPLMGQLARSARDIPV 249

Query: 246 IIV-TENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAH 300
            I      D     A+      ++ C    L+     +L  L   G+T +  EGG+A+A 
Sbjct: 250 WICHGAGADAERLRAWEGLGAVLLPCAADGLQLDAGDVLQQLGQAGLTRVFCEGGSALAA 309

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS 327
           S +   LVD +I + + + IG  G+ S
Sbjct: 310 SLLAQDLVDELIGFTAGLGIGGDGLSS 336


>gi|319645199|ref|ZP_07999432.1| RibD protein [Bacillus sp. BT1B_CT2]
 gi|317393008|gb|EFV73802.1| RibD protein [Bacillus sp. BT1B_CT2]
          Length = 362

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/329 (39%), Positives = 175/329 (53%), Gaps = 14/329 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DA +M+ AL  +R   G T  NP V  ++VKDG V+G G     G  HAEV A++ AG  
Sbjct: 3   DAHYMNLALELARQGEGQTGANPLVGAVVVKDGEVVGMGAHLKYGEAHAEVHAIQMAGRH 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-- 124
           A GA  YVTLEPCSHYG++PPCA+ II  G++RVVV  +DP+  VSGRG++ L   GI  
Sbjct: 63  AEGAVIYVTLEPCSHYGKTPPCAELIIRSGLKRVVVAAEDPNPLVSGRGIEMLRSAGIEV 122

Query: 125 ---IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
              ++    E   + F+H   T       ++TLK A S D     A   S  IT   ++ 
Sbjct: 123 ETGVLKEQAEELNEKFMHFMRT----GLPYVTLKAAASLDGKTATATGDSKWITSEEARM 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
             H  R     ILVG GT+ ADDP LTCRL G   + P+R++LD    + L SK+I+   
Sbjct: 179 DAHQYRKNHQCILVGSGTIKADDPSLTCRLPGAV-NQPVRVVLDTTLSIPLQSKVIQDKE 237

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLVEGGAAVA 299
               I  T   DP       K+ + +   D  +L  + +L  L  RG+ S+ VEGGA V 
Sbjct: 238 APTWIYTTSKADPEKVRNVEKEGVQVTVLDADELQVRDVLLHLADRGIASVFVEGGATVH 297

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP 328
            SF+   L   II Y +  +I  GG+ SP
Sbjct: 298 ASFVKEGLYQQIIFYLAPKLI--GGLQSP 324


>gi|52080843|ref|YP_079634.1| riboflavin-specific deaminase [Bacillus licheniformis ATCC 14580]
 gi|52786214|ref|YP_092043.1| hypothetical protein BLi02475 [Bacillus licheniformis ATCC 14580]
 gi|52004054|gb|AAU23996.1| riboflavin-specific deaminase [Bacillus licheniformis ATCC 14580]
 gi|52348716|gb|AAU41350.1| RibD [Bacillus licheniformis ATCC 14580]
          Length = 362

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/329 (39%), Positives = 175/329 (53%), Gaps = 14/329 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DA +M+ AL  +R   G T  NP V  ++VKDG V+G G     G  HAEV A++ AG  
Sbjct: 3   DAHYMNLALELARQGEGQTGANPLVGAVVVKDGEVVGMGAHLKYGEAHAEVHAIQMAGRH 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-- 124
           A GA  YVTLEPCSHYG++PPCA+ II  G++RVVV  +DP+  VSGRG++ L   GI  
Sbjct: 63  AEGAVIYVTLEPCSHYGKTPPCAELIIRSGLKRVVVAAEDPNPLVSGRGIEMLRSAGIEV 122

Query: 125 ---IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
              ++    E   + F+H   T       ++TLK A S D     A   S  IT   ++ 
Sbjct: 123 ETGVLKEQAEELNEKFMHFMRT----GLPYVTLKAAASLDGKTATATGDSKWITSEEARM 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
             H  R     ILVG GT+ ADDP LTCRL G   + P+R++LD    + L SK+I+   
Sbjct: 179 DAHQYRKNHQCILVGSGTIKADDPSLTCRLPGAV-NQPVRVVLDTTLSIPLQSKVIQDKE 237

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLVEGGAAVA 299
               I  T   DP       K+ + +   D  +L  + +L  L  RG+ S+ VEGGA V 
Sbjct: 238 APTWIYTTSKADPEKVRNVEKEGVQVTVLDADELQVRDVLLHLADRGIASVFVEGGATVH 297

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP 328
            SF+   L   II Y +  +I  GG+ SP
Sbjct: 298 ASFVKEGLYQQIIFYLAPKLI--GGLQSP 324


>gi|239827589|ref|YP_002950213.1| riboflavin biosynthesis protein RibD [Geobacillus sp. WCH70]
 gi|239807882|gb|ACS24947.1| riboflavin biosynthesis protein RibD [Geobacillus sp. WCH70]
          Length = 361

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 124/330 (37%), Positives = 188/330 (56%), Gaps = 12/330 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M  A+  ++  +G TS NP V  ++VKDG ++G G     G  HAEV A+  AGE+
Sbjct: 4   DEQYMRLAIEIAKAGIGQTSPNPVVGAVVVKDGEIVGFGAHLKAGELHAEVHAIRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-- 124
           A+G+T YVTLEPCSHYG++PPCA  ++E G++RVV+   DP+  V+G+G++ L   GI  
Sbjct: 64  AKGSTVYVTLEPCSHYGKTPPCADLLVETGVQRVVIATTDPNPLVAGKGIEKLRSAGIDV 123

Query: 125 ---IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
              ++    +   ++F H Y+     K   +TLK A S D  I      S  IT   ++ 
Sbjct: 124 KLGVLKEEADELNRVFFH-YIA---AKTPFVTLKYASSLDGKIATTTGESKWITSEAARE 179

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH  RA  DAILVG+ TV+AD+P LT RL    + +P+RI+LD H +  LD+ I+    
Sbjct: 180 DVHRYRAVHDAILVGVNTVIADNPSLTVRLPEGGK-NPIRIVLDTHLRTPLDANILNDGQ 238

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVA 299
               I+V           + K+N+ II       D+ +LL +L  + +TSL VEGG+ V 
Sbjct: 239 AETWIVVGSEISVEKRKRYEKENVQIISMKKPHIDIDELLRVLGEKRITSLFVEGGSHVH 298

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
            SF+ ++ V+ I+ Y +  +IG    P+P+
Sbjct: 299 DSFVRAKAVNEIVAYFAPKIIGGKQAPTPI 328


>gi|157960990|ref|YP_001501024.1| riboflavin biosynthesis protein RibD [Shewanella pealeana ATCC
           700345]
 gi|157845990|gb|ABV86489.1| riboflavin biosynthesis protein RibD [Shewanella pealeana ATCC
           700345]
          Length = 373

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/333 (39%), Positives = 191/333 (57%), Gaps = 18/333 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D++ MS A+  ++  +  T  NPSV  +IVKDG ++G G     G PHAEV AL  AG +
Sbjct: 6   DSQMMSLAIELAQKGMYTTRPNPSVGSVIVKDGEIVGEGYHIRAGGPHAEVYALNMAGSD 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSHYGR+PPCA+ +IE G+ RVV+ V DP+  VSGRG+  L   GI V
Sbjct: 66  AKGATAYVTLEPCSHYGRTPPCAKALIEHGVSRVVIAVTDPNPEVSGRGIAMLRDAGIRV 125

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  +M  E K     +L R  +    +T+K+A S D    ++   S  ITG  ++  V  
Sbjct: 126 DVGLMTEEAKQVNLGFLKRMEKGLPWVTVKLAASLDGKTALSNGVSKWITGPEARRDVQR 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSLDSK 235
           LRA+  A++ G+ T+LADDP L  R + L          + H P+R++LD   +L  +  
Sbjct: 186 LRARHCALVTGVETILADDPSLNVRHSELGSLASQLAPAEIHQPLRVVLDSQARLGHELN 245

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNIN---IIYCDCR-DLKKLLTILVGRGVTSLL 291
           + K  + +P+++V+    P    A    ++    +   D R DL  LL++L G    S+L
Sbjct: 246 LFK--IDSPILLVSTQAYPESVQAAWPPHVQSQVLAAVDSRIDLNALLSLL-GESCNSVL 302

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           VE GA +A +F+N  L D I+LY++  ++G  G
Sbjct: 303 VEAGATLAGAFVNQGLADEIVLYQAMKILGSQG 335


>gi|150388845|ref|YP_001318894.1| riboflavin biosynthesis protein RibD [Alkaliphilus metalliredigens
           QYMF]
 gi|149948707|gb|ABR47235.1| riboflavin biosynthesis protein RibD [Alkaliphilus metalliredigens
           QYMF]
          Length = 366

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 129/363 (35%), Positives = 205/363 (56%), Gaps = 16/363 (4%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           ++M  A+  ++   G T+ NP V  +IVK+  VIG G   Y G PHAEV A   A E+ +
Sbjct: 4   QYMRKAIELAKKGTGHTNPNPLVGAVIVKNNKVIGEGYHHYYGGPHAEVDAFNNATEDVK 63

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GAT YVTLEPCSHYG++PPCA+ I+E GI +VV+ + DP+  V+G G+  L + GI ++ 
Sbjct: 64  GATMYVTLEPCSHYGKTPPCAKAIVEKGIAQVVIAMRDPNPLVAGNGIGILRESGIEVIS 123

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++ESE K     ++     +     LK A++ D  I  A   S  IT   S+  VH +R
Sbjct: 124 EVLESEAKNLNEIFVKYITTEMPFCILKTAMTLDGKIATATGDSKWITNEESRQYVHEIR 183

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK-TALLAPVI 246
            Q  +I+VGIGTVL DDP+LT RL+  +   P+R+I+D   K  L +++++ ++ +  +I
Sbjct: 184 HQVSSIMVGIGTVLVDDPQLTTRLHNQEGSDPIRVIVDTEAKTPLWAQVLQLSSKVRTII 243

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             TE  DP    A  +K   +I    +    DLK L+  L  +G+ S+L+EGGA +  S 
Sbjct: 244 ATTEKADPNKIKALEEKGAEVIIIPLKNNQVDLKCLIQQLGAKGIDSVLIEGGATLNDSA 303

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLE-------EGYLEKNFMCVRRDYFGSDVCLE-Y 354
           +   +VD ++ + +  ++G     +P+        +  ++   + VR+  FG D+ +E Y
Sbjct: 304 LQEGIVDKVVSFIAPKIVGGAKAKTPVGGDGIKYMKDAIQLTDIQVRK--FGQDIMIEGY 361

Query: 355 IGK 357
           +GK
Sbjct: 362 LGK 364


>gi|255067329|ref|ZP_05319184.1| riboflavin biosynthesis protein RibD [Neisseria sicca ATCC 29256]
 gi|255048480|gb|EET43944.1| riboflavin biosynthesis protein RibD [Neisseria sicca ATCC 29256]
          Length = 365

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 136/326 (41%), Positives = 184/326 (56%), Gaps = 11/326 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D + M  AL  +R     TS NP V C+I     ++G+G     G PHAEV AL +AGE
Sbjct: 5   IDTQMMQNALALARLGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQAGE 64

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            ARGATAYVTLEPCSHYGR+PPCA+ +I  G+ RVV  + DP+  V+G+GL  L   GI 
Sbjct: 65  MARGATAYVTLEPCSHYGRTPPCAEALIGSGVSRVVAAMTDPNPLVAGKGLAMLEAAGIR 124

Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
            +  ++E+E +     +L+R    R  + +K A S D    +A   S  ITG  ++  V 
Sbjct: 125 TESGLLETEARELNRGFLSRIERGRPFVRIKCAASLDGKTALADGRSYWITGEAARADVQ 184

Query: 185 LLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
            LRA+S A+L GIGTVLAD+P L  R    L++  P RI+LD   +  L S II    L+
Sbjct: 185 TLRAESCAVLTGIGTVLADNPCLNVRAFPTLRQ--PARIVLDSKLQTPLGSHIISDD-LS 241

Query: 244 PVIIVTENDD-----PVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAA 297
           P IIVT  DD     P  A +  +   +    + R DL  LL  L   G   ++VE GA 
Sbjct: 242 PTIIVTAVDDEERLKPYHAFSHIRILRSSENANGRIDLAALLPQLAELGYGEIMVEAGAT 301

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323
           +A +FI S L D I+LY++  ++GEG
Sbjct: 302 LASAFIESGLADEIVLYQAPKILGEG 327


>gi|229916731|ref|YP_002885377.1| riboflavin biosynthesis protein RibD [Exiguobacterium sp. AT1b]
 gi|229468160|gb|ACQ69932.1| riboflavin biosynthesis protein RibD [Exiguobacterium sp. AT1b]
          Length = 354

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/346 (36%), Positives = 190/346 (54%), Gaps = 7/346 (2%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           ++M  A++ ++   G T  NP V  ++VKDG ++G G     G PHAEV A+  AG  A 
Sbjct: 3   QYMEQAIQLAKSADGQTGVNPLVGAVLVKDGRIVGMGAHLKAGEPHAEVHAIRMAGAAAY 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127
           GAT YVTLEPCSH+G++PPCA  I+E GI+RVV+ + DP+  V+G G+  L   G+ VD 
Sbjct: 63  GATLYVTLEPCSHHGKTPPCADLIVESGIKRVVIAMKDPNPLVAGNGIMRLQAAGVEVDV 122

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++E+E +    A+L     KR ++ LK A S D  + +    S  +T   ++  VH LR
Sbjct: 123 GLLEAEARALNPAFLRSLETKRPYVILKTATSLDGKVALETGESQWVTSSEARRDVHELR 182

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           A  DAIL GIGTVLADDP LT RL+ +    P R++LD   +L   S + +TA   PV++
Sbjct: 183 ATVDAILTGIGTVLADDPSLTVRLDRVTRQ-PKRVVLDRDLRLPFASTLARTAEDVPVLL 241

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            T +D+       R K   I   D   L  +L  L   G+  +L+E G  +  S ++   
Sbjct: 242 FTSSDEA--ERRERAKAAGIELFDYTSLGTVLETLYANGIGRVLIEAGPTLVTSLLDGGY 299

Query: 308 VDSIILYRSQIVI-GEGGIPSPLEEGYLE--KNFMCVRRDYFGSDV 350
           VD  + Y+S  V  G+ G+    +EG ++    F   + +  G D+
Sbjct: 300 VDEWVAYQSPRVFGGKHGVYRSQQEGTIDGISRFTIHQVETIGPDL 345


>gi|254804368|ref|YP_003082589.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           phosphoribosylamino uracil reductase [Neisseria
           meningitidis alpha14]
 gi|254667910|emb|CBA04065.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           phosphoribosylamino uracil reductase [Neisseria
           meningitidis alpha14]
          Length = 369

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 126/327 (38%), Positives = 181/327 (55%), Gaps = 9/327 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  ALR +      TS NP V C+I     V+G+G     G PHAEV AL +A
Sbjct: 3   SDTDISMMETALRLAALGRFSTSPNPRVGCVIAHGSQVVGQGFHVKAGEPHAEVHALHQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   G
Sbjct: 63  GEMAQGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  
Sbjct: 123 IKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V +LRA+S A+L GIGTVLAD+P L  R    L++  P RI+LD   +L LDS ++    
Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296
               I   E D+  L    +  ++ I+          DL  L+ +L   G+  L+VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYRKHAHVRILMPSETAGGKIDLNSLMRLLADEGIGELIVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +  +F+   L D I+LYRS  ++G G
Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGSG 327


>gi|170750355|ref|YP_001756615.1| riboflavin biosynthesis protein RibD [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656877|gb|ACB25932.1| riboflavin biosynthesis protein RibD [Methylobacterium
           radiotolerans JCM 2831]
          Length = 369

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 143/363 (39%), Positives = 191/363 (52%), Gaps = 13/363 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI--VIGRGVTAYGGCPHAEVQALEE 62
           S DA FM  AL   R  +G T  NPSV  ++V+ G   ++G   TA GG PH E  AL  
Sbjct: 2   SGDANFMRLALALGRRGLGTTWPNPSVGAVVVEPGTGRILGTAATAQGGRPHGEPVALAA 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGAT YVTLEPCSH+GR+PPC   I+  GI RVV  ++DPD RV+GRG   L + 
Sbjct: 62  AGEAARGATLYVTLEPCSHHGRTPPCTDAILAAGIARVVSALEDPDPRVAGRGHDLLRRG 121

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ V+  +M  E       ++TR    R  + LK+A ++D     AG   + ITG ++  
Sbjct: 122 GVAVETGLMRDEAARDHVGHVTRVTRGRPALHLKLARTRDGFCAAAGPERLRITGPVADG 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VHL RA +DAIL+GIGT  ADDP LT RL GL   SP+R++LD H +LS  S + +TA 
Sbjct: 182 AVHLWRAHADAILIGIGTARADDPSLTVRLPGLGARSPLRVVLDTHLRLSPASVLARTAR 241

Query: 242 LAPVIIVTENDDP------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
             P +++T    P      + AL      +        DL   LT L  RG+T L  EGG
Sbjct: 242 DTPTLVLTTRSAPAHARRALEALGVAVATVPADPAGGIDLPAALTHLGERGLTRLCSEGG 301

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVC 351
             +A +   + L+D+  L    + +G  G    +   L E      F    R   G D  
Sbjct: 302 PRLAEALARADLIDACTLVTGPMALGPAGGLRALGPALAEALSGDRFREAERLQLGPDAA 361

Query: 352 LEY 354
           + Y
Sbjct: 362 VTY 364


>gi|325133593|gb|EGC56254.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
           M13399]
          Length = 369

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 126/327 (38%), Positives = 181/327 (55%), Gaps = 9/327 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  ALR +      TS NP V C+I     V+G+G     G PHAEV AL +A
Sbjct: 3   SDTDISMMETALRLAALGRFSTSPNPRVGCVIAHGSQVVGQGFHVKAGEPHAEVHALHQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   G
Sbjct: 63  GEMAQGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  
Sbjct: 123 IKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V +LRA+S A+L GIGTVLAD+P L  R    L++  P RI+LD   +L LDS ++    
Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296
               I   E D+  L    +  ++ I+          DL  L+ +L   G+  L+VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYRKHAHVRILMPSETAGGKIDLNSLMRLLADEGIGELIVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +  +F+   L D I+LYRS  ++G G
Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGSG 327


>gi|269792620|ref|YP_003317524.1| riboflavin biosynthesis protein RibD [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100255|gb|ACZ19242.1| riboflavin biosynthesis protein RibD [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 377

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 133/320 (41%), Positives = 186/320 (58%), Gaps = 11/320 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  AL  +       S NP V C+IVKDG V+G G     G PHAEV+AL  AG+ A+G
Sbjct: 21  FMRMALSLAIRGGTAVSPNPKVGCVIVKDGQVVGWGYHKRYGGPHAEVEALTMAGDRAQG 80

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           ATAYVTLEPCSH+G++PPCA  ++E GIRRVV  + DP+ +V+GRGL+ L+  G+ +V  
Sbjct: 81  ATAYVTLEPCSHHGKTPPCAPRLVEAGIRRVVYGMMDPNPKVNGRGLEILASGGVEVVGP 140

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +ME   +     ++ R    R  +TLK A+S D    +    S  ITG +++ + HLLRA
Sbjct: 141 VMEDRCRWENRGFIRRMTLGRPWVTLKGALSVDGTTCLENGKSKWITGPLARQKAHLLRA 200

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DAILVGI TV+ DDP L  R   +   SP ++ILD   ++ LD+K +K       I+ 
Sbjct: 201 EHDAILVGINTVINDDPALNVR--SVDGDSPKKVILDGGLRVPLDAKALKD---GERIVF 255

Query: 249 TENDDPVLAL-AFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           T  D P   + A R   + +     +    DL  +L+ L G GV SLLVEGG  V  +F+
Sbjct: 256 TSTDAPKDRVEALRDMGVQVCPVPSQGGLLDLASVLSALGGMGVNSLLVEGGPRVLGAFV 315

Query: 304 NSRLVDSIILYRSQIVIGEG 323
           +  L D + L+ S  ++G G
Sbjct: 316 DRCLGDMVSLFISPSILGRG 335


>gi|218514099|ref|ZP_03510939.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
           [Rhizobium etli 8C-3]
          Length = 179

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 107/177 (60%), Positives = 133/177 (75%), Gaps = 1/177 (0%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M V+  D  FM+AA+R SR H+G T+TNPSV CLIVKDG+++G+ VTA GG PHAE QAL
Sbjct: 1   MSVTPDDEGFMAAAIRLSRQHLGRTATNPSVGCLIVKDGVIVGQAVTALGGRPHAEPQAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAG+ ARGATAYVTLEPCSH+G++PPCA+ +I  G+ RVV+ V DPD RVSGRG+  L 
Sbjct: 61  AEAGQLARGATAYVTLEPCSHHGKTPPCAEALIAYGVARVVISVTDPDPRVSGRGITMLR 120

Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
             GI VD  ++E+EG+  L  YLTRQ + R ++TLK+AVS D MIG  G G V ITG
Sbjct: 121 DAGIEVDAGVLEAEGRRSLAGYLTRQTKNRPYVTLKLAVSADGMIGRQGEGQVAITG 177


>gi|212638856|ref|YP_002315376.1| riboflavin-specific pyrimidine reductase/deaminase [Anoxybacillus
           flavithermus WK1]
 gi|212560336|gb|ACJ33391.1| Riboflavin-specific pyrimidine reductase/deaminase [Anoxybacillus
           flavithermus WK1]
          Length = 358

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 128/331 (38%), Positives = 185/331 (55%), Gaps = 12/331 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D ++M  AL+ ++   G TS NP V  ++VK G ++G G     G PHAEV AL  AGE
Sbjct: 1   MDEQYMRFALQLAQSARGQTSPNPLVGAVVVKHGEIVGFGAHLKAGEPHAEVHALRMAGE 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A GAT YVTLEPCSHYGR+PPCA  +IE  ++RVVV   DP+  V+G+G++ L + GI 
Sbjct: 61  KAEGATVYVTLEPCSHYGRTPPCADLLIEKKVKRVVVATTDPNPLVAGKGIEKLKRAGID 120

Query: 125 ----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
               ++    ++  ++F H   T    K  ++TLK A+S D  I      S  IT   ++
Sbjct: 121 VTVGVLKEEADALNEMFFHYIST----KTPYVTLKYAMSLDGKIATKTGESKWITSEDAR 176

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             VH  R   DAI+VG+GT+LADDP LT R  G +   P+RI+LD H +  L + ++   
Sbjct: 177 RDVHRERRMHDAIVVGVGTILADDPSLTVRF-GYEGKQPIRIVLDTHLRTPLHANVVTDQ 235

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAV 298
                I+V ++        +    ++II  +    D+  LL  L  R V S+ VEGGA V
Sbjct: 236 KAPTWIVVGQHVTEEQIKPYEHAGVHIIRMNENKIDIPFLLHELGKRNVMSIFVEGGAHV 295

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
             SF++SR V  +I Y + ++IG    PS +
Sbjct: 296 HGSFLHSRSVQQVIAYIAPMLIGGNEAPSAI 326


>gi|23008993|ref|ZP_00050209.1| COG1985: Pyrimidine reductase, riboflavin biosynthesis
           [Magnetospirillum magnetotacticum MS-1]
          Length = 284

 Score =  216 bits (550), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 114/254 (44%), Positives = 154/254 (60%), Gaps = 1/254 (0%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D R M  AL   R ++G T  NPSV  ++V +G ++G+ VTA GG PHAE  AL  AG
Sbjct: 13  ALDRRAMRLALALGRRNLGRTWPNPSVGAVVVAEGRIVGQAVTAPGGRPHAEPLALAMAG 72

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGAT YVTLEPCSHYGR+PPC +  I  GIRRVV  ++DPD RV+GRG   L   G+
Sbjct: 73  EAARGATLYVTLEPCSHYGRTPPCTEATIASGIRRVVTAIEDPDPRVAGRGHAQLRAAGL 132

Query: 125 IVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V+  ++  E       + +R    R  + LK+A ++D     +    + ITG I+   V
Sbjct: 133 TVETGLLREEAARDHRGHFSRVTRGRPSLHLKLARTRDGFAAPSTGERLKITGPIADGAV 192

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           HL RA +DAI+VGIGT  ADDP LT RL GL + SP+RI+LD   +L+  S +++ A   
Sbjct: 193 HLWRAHADAIMVGIGTARADDPSLTVRLPGLADRSPVRIVLDSTLRLNPASHLVRGARDL 252

Query: 244 PVIIVTENDDPVLA 257
           P +++T    P  A
Sbjct: 253 PTLVLTGRGAPAHA 266


>gi|260893814|ref|YP_003239911.1| riboflavin biosynthesis protein RibD [Ammonifex degensii KC4]
 gi|260865955|gb|ACX53061.1| riboflavin biosynthesis protein RibD [Ammonifex degensii KC4]
          Length = 370

 Score =  216 bits (550), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 136/361 (37%), Positives = 196/361 (54%), Gaps = 11/361 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  AL  +    G TS NP V  ++VK+G VI  G     G PHAE++AL  AGEE
Sbjct: 7   DEFFMRRALELALKARGRTSPNPMVGAVLVKEGRVIAEGYHRRAGMPHAEIEALRAAGEE 66

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGAT YV LEPC H GR+ PC + II  GI+RVVV ++DP+  V+G+G++ L + G+ V
Sbjct: 67  ARGATLYVNLEPCCHVGRTGPCTEAIIAAGIKRVVVAMEDPNPLVAGKGIKILREAGLEV 126

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E +     ++     +   + LK+A++ D  I  +   +  ITG  ++  VH 
Sbjct: 127 TVGVLEQEARRLNEVFVKFITTREPFVVLKVAMTLDGKIATSTGEARWITGPEARAYVHE 186

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR   DAILVG GTVL DDP LT RL G ++  P+R+IL     L L ++++     AP 
Sbjct: 187 LRDTYDAILVGKGTVLKDDPSLTARLPGARD--PVRVILSSLADLPLSARVLNLNSSAPT 244

Query: 246 -IIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            + VTE   P    A + K   ++ C      DLK LL  L  R +T +LVEGG  V  S
Sbjct: 245 WVAVTEQAPPSRIKALQGKGAEVLVCGPGPQVDLKLLLKELGRREITGVLVEGGGTVNAS 304

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           F+ +RLVD +I   +  + G    P P+    +E     +R      D+ ++ +G + C 
Sbjct: 305 FLANRLVDKVIWMVAPKIFGGTKAPGPVGGEGVEHPDRALRL----KDLTVKKLGADFCF 360

Query: 362 Q 362
           +
Sbjct: 361 E 361


>gi|167623139|ref|YP_001673433.1| riboflavin biosynthesis protein RibD [Shewanella halifaxensis
           HAW-EB4]
 gi|167353161|gb|ABZ75774.1| riboflavin biosynthesis protein RibD [Shewanella halifaxensis
           HAW-EB4]
          Length = 373

 Score =  216 bits (550), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 130/333 (39%), Positives = 195/333 (58%), Gaps = 18/333 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D++ MS A+  ++  +  T  NPSV  +IVKDG ++G G     G PHAEV AL  AG +
Sbjct: 6   DSQMMSLAIELAQKGMYTTRPNPSVGSVIVKDGEIVGEGYHIRAGGPHAEVYALNMAGAD 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSHYGR+PPCA+ +IE G+ RVV+ V DP+  VSGRG+  L   GI V
Sbjct: 66  AKGATAYVTLEPCSHYGRTPPCAKALIEHGVSRVVIAVTDPNPEVSGRGIAMLRDAGIRV 125

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  +M  E K     +L R  +    +T+K+A S D    ++   S  ITG  +++ V  
Sbjct: 126 DVGLMTEEAKQVNLGFLKRMEKGLPWVTVKLAASLDGKTALSNGVSKWITGPEARSDVQR 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSLDSK 235
           LRA+  A++ G+ T+LADDP L  R + L          + H P+R++LD   +L  +  
Sbjct: 186 LRARHCALVTGVETILADDPCLNVRHSELGSLAGQLAPAEIHQPLRVVLDSQARLGTELN 245

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNIN---IIYCDCR-DLKKLLTILVGRGVTSLL 291
           +  +A  +P+++V+    P    A    ++    +   D R DL+ LL++L G+   ++L
Sbjct: 246 LFNSA--SPILLVSTIAYPESIQAAWPAHVQSQVLPAVDARIDLQALLSLL-GKSCNTVL 302

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           VE GA +A +F+N  LVD I+LY++  ++G  G
Sbjct: 303 VEAGATLAGAFVNQGLVDEIVLYQAMKILGGQG 335


>gi|295704047|ref|YP_003597122.1| riboflavin biosynthesis protein RibD [Bacillus megaterium DSM 319]
 gi|294801706|gb|ADF38772.1| riboflavin biosynthesis protein RibD [Bacillus megaterium DSM 319]
          Length = 363

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 122/336 (36%), Positives = 194/336 (57%), Gaps = 6/336 (1%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M+ AL+ +R   G T  NP V  +IV D  ++G G     G PHAE+ AL  AGE+A+G
Sbjct: 7   YMNIALQNARSTKGQTEPNPLVGSVIVNDNRIVGIGTHLKAGEPHAEIHALRMAGEQAKG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           ATAYVTLEPCSH+GR+ PCA+ ++E G+++VV+   DP+  V+G G++ L   GI ++  
Sbjct: 67  ATAYVTLEPCSHHGRTGPCAEALVEAGVKKVVIATLDPNPLVAGNGVEILKNAGIEVITG 126

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + E E +     +    V K+  ++LK A++ D  I  A   S  IT   ++  VH LR 
Sbjct: 127 VCEEESRQMNEVFNKYIVTKKPFVSLKSAITLDGKIATASSHSKWITSEEARLDVHQLRH 186

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           ++  ILVG+ TV+ D+PELT R+ G +  SP+RI++D   ++ L+SK+   +L    I  
Sbjct: 187 ETAGILVGVNTVIKDNPELTTRIEGGR--SPIRIVMDSKLRMPLESKLATDSLAPTWIFT 244

Query: 249 TENDDPVLALAFRKKNINIIYCDCRD---LKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           ++           K+ + +      D   L+ +L+IL  + V+SLL+EGG  V  +F+ +
Sbjct: 245 SQGYSKEKKEQLEKQGVEVFVTSGEDKVNLEDMLSILGEKFVSSLLIEGGGEVNAAFLEN 304

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341
           RL+D ++LY +  + G    P+ LE   +EK +  V
Sbjct: 305 RLIDKLVLYMAPKLSGGKEAPTFLEGKGVEKMWDAV 340


>gi|169827319|ref|YP_001697477.1| riboflavin biosynthesis protein ribD [Lysinibacillus sphaericus
           C3-41]
 gi|168991807|gb|ACA39347.1| Riboflavin biosynthesis protein ribD [Lysinibacillus sphaericus
           C3-41]
          Length = 375

 Score =  216 bits (549), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 130/364 (35%), Positives = 200/364 (54%), Gaps = 18/364 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ D ++M  AL  +    G T+ NP V  +IVK+ I++G G+    G PHAEV A   
Sbjct: 6   MTTKDEKYMQLALDLAASAKGNTNPNPLVGAVIVKNDIIVGTGLHRKAGEPHAEVHAFRM 65

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+ AT YVTLEPCSH+G++PPCA  + + G+ RVVV + DP+  V+GRG+Q L   
Sbjct: 66  AGEHAQNATLYVTLEPCSHFGKTPPCANLVKDSGVSRVVVAMQDPNPTVAGRGIQLLRDA 125

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V+  ++E + +     ++   + KR  I  K A++ D  I      S  +TG  ++ 
Sbjct: 126 GITVEVGVLEQQARRLNERFIHNMLTKRPFIISKFAMTVDGKIATHTGHSKWVTGKAARE 185

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH +R + D ILVG+GTV+AD+P LT RL+     +P RII+D   +  LD+ ++ T  
Sbjct: 186 DVHRIRHEVDGILVGVGTVIADNPSLTTRLSEGYGKNPTRIIMDSLLRTPLDANVLNTE- 244

Query: 242 LAPVIIVTEND---DPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGA 296
            AP I+V  ND   + +  L  +   +  I  D R L   ++L  L   G+T +L+EGG+
Sbjct: 245 EAPTILVCSNDVSQEKIDLLINKGLTVLPIEKDERGLNIDEMLARLYEHGITDILLEGGS 304

Query: 297 AVAHSFINSRLVDSIILYRSQIVIG--------EGGIPSPLEEGYLEKNFMCVRRDYFGS 348
            V  SF+    +D  ++Y +  V+G         G  PS + E + +  F     D  G 
Sbjct: 305 KVNASFLQQGAIDKYVIYIAPKVLGGNLSLTPFAGSNPSLMNEAW-QVEFASF--DKIGE 361

Query: 349 DVCL 352
           D+C+
Sbjct: 362 DLCI 365


>gi|224824436|ref|ZP_03697543.1| riboflavin biosynthesis protein RibD [Lutiella nitroferrum 2002]
 gi|224602929|gb|EEG09105.1| riboflavin biosynthesis protein RibD [Lutiella nitroferrum 2002]
          Length = 364

 Score =  216 bits (549), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 143/362 (39%), Positives = 196/362 (54%), Gaps = 13/362 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S+ D   M+ ALR +   +  T+ NP V C++V+DG V+G G     G PHAEV AL
Sbjct: 1   MTFSAVDHAMMAQALRLAEQGLYTTTPNPRVGCVVVRDGEVVGEGWHIAAGTPHAEVHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE ARGATAYVTLEPCSHYGR+PPCA+ +IE G+ RVV  + DP   V+GRGL  L 
Sbjct: 61  RMAGELARGATAYVTLEPCSHYGRTPPCAKGLIEAGVGRVVAAMQDPYHEVAGRGLDMLR 120

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++E+E +     +L+R    R  +TLK A S D    +    S  ITG  +
Sbjct: 121 AAGIEVAVGLLEAEARRLNKGFLSRAERGRPWVTLKAAASLDGKTALLNGASQWITGPDA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  VH LRA+S AIL G GTVLADDP+LT R        P R+++D   + S  ++I + 
Sbjct: 181 RRDVHRLRARSCAILTGSGTVLADDPQLTVR-EVFTPRQPRRVVVDSRLQTSPGARIYRD 239

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINI-IYCDCR---DLKKLLTILVGRGVTSLLVEGG 295
                 I+ T   D      + ++ + + +  D     DL  LL  L   GV  L+VE G
Sbjct: 240 ---GETILATAVADAARHQPYLEQGVTVWVLGDTAGRVDLAALLARLAQEGVGELMVEAG 296

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIG---EGGIPSPLEEGYLEKNFMCVRR-DYFGSDVC 351
           A +  + + + LVD I+LY +  ++G   +G    P+ E    K  + VR     G DV 
Sbjct: 297 AGLNGALLQAGLVDEIMLYLAPTLLGDAAQGLFGWPVLESLAGKRNVVVRDLRMVGQDVR 356

Query: 352 LE 353
           LE
Sbjct: 357 LE 358


>gi|220931696|ref|YP_002508604.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase;5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Halothermothrix orenii H 168]
 gi|219993006|gb|ACL69609.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase;5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Halothermothrix orenii H 168]
          Length = 371

 Score =  216 bits (549), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 121/320 (37%), Positives = 183/320 (57%), Gaps = 8/320 (2%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M   L  +R   G T+ NP V  +IV++G ++G+G   Y G PHAE+ ALEEAGE ARG
Sbjct: 12  YMQKVLELARKGEGYTAPNPLVGAIIVREGEIVGQGFHQYYGGPHAEILALEEAGERARG 71

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           AT YV LEPC HYG++PPC + II+ G++RV+  + DP+  V+G+G++ L + GI V+  
Sbjct: 72  ATLYVNLEPCCHYGKTPPCTKKIIDSGVKRVLAAMFDPNPLVAGKGVKELQENGIEVEVG 131

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++  E +     Y+      R  + LK A++ D  I      S  I+   ++   H LR 
Sbjct: 132 LLRKEAERLNEVYIRYISSDRPFVYLKSALTLDGFIATVTGDSRWISNEKARLFAHTLRH 191

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA+LVGIGT+L DD  LT RL   +    +RIILDP   +  D+++I        I+V
Sbjct: 192 KVDAVLVGIGTILKDDSALTTRLPDGRGEDSIRIILDPELSIPPDARVINQKSRKRTILV 251

Query: 249 --TENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAHS 301
              + D+       RK+N+ I+     +     LK LL IL  +G++S+LVEGG  V +S
Sbjct: 252 CGEDYDNKKYQGLLRKENLEILSVQLNEEGKIPLKALLRILHKQGISSILVEGGGRVNYS 311

Query: 302 FINSRLVDSIILYRSQIVIG 321
           F+   LVD +  + + I++G
Sbjct: 312 FLKEGLVDKVYFFIAPIILG 331


>gi|325201538|gb|ADY96992.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
           M01-240149]
          Length = 369

 Score =  215 bits (548), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 126/327 (38%), Positives = 183/327 (55%), Gaps = 9/327 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL+ +      TS NP V C+I +   ++G+G     G PHAEV AL +A
Sbjct: 3   SETDISMMQNALKLAALGRFSTSPNPRVGCVIAQGSQIVGQGFHVKAGEPHAEVHALRQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   G
Sbjct: 63  GEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  
Sbjct: 123 IKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V +LRA+S A+L GIGTVLAD+P L  R    L++  P RI+LD   +L LDS ++    
Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296
               I   E D+  L       +I I+      D + DL +L+ +L   G   ++VE GA
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHRLMRLLADEGYGEVMVEAGA 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +  +F+   L D I+LYRS  ++G G
Sbjct: 301 KLTSAFLAEDLADEIVLYRSPKILGSG 327


>gi|110835035|ref|YP_693894.1| (S)-2-hydroxy-fatty-acid dehydrogenase [Alcanivorax borkumensis
           SK2]
 gi|110648146|emb|CAL17622.1| (S)-2-hydroxy-fatty-acid dehydrogenase [Alcanivorax borkumensis
           SK2]
          Length = 377

 Score =  215 bits (548), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 127/344 (36%), Positives = 188/344 (54%), Gaps = 20/344 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S+ D ++M+ AL+ +R  +  T  NP V C++V+DG V+G G  A  G PHAE  AL
Sbjct: 1   MSFSAADHQYMARALQLARRGLYTTDPNPRVGCVLVRDGAVVGEGFHARAGTPHAERHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AGE ARGATAYVTLEPCSH GR+ PCA  +I+ G+ RVV  ++DP+  V+G+GLQ L+
Sbjct: 61  AQAGERARGATAYVTLEPCSHTGRTGPCADALIDAGVTRVVAAMEDPNPLVAGQGLQRLA 120

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI     ++E+E +     +++R   +R +I +KIA S D    MA   S  ITG  +
Sbjct: 121 DAGIATAVGLLEAEARALNPGFVSRMTRQRPYIRIKIAASVDGRTAMANGESQWITGPAA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTC-----RLNGLQEHS--------PMRIILDP 226
           +  V  LRA+S A++ G+GTVLAD P  T      RL   ++H+        P+R+ILD 
Sbjct: 181 REDVQRLRARSSAVITGVGTVLADRPSYTVRPRQWRLAEYRQHAADDDWVRQPLRVILDR 240

Query: 227 HFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTIL 282
             +   D  ++    L   ++V     P    A       ++         DL++LL  L
Sbjct: 241 TLRTPPDVPVVSA--LGHCLLVAGEQHPGRQNALESAGAEVMLLPASGSGIDLQQLLIEL 298

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
             R    +LVE GA +A +F+   L D I++Y +  ++G    P
Sbjct: 299 NRRECNEVLVECGATLAGAFVREGLFDEILVYMAPTLLGSSARP 342


>gi|308389915|gb|ADO32235.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
           alpha710]
 gi|325135601|gb|EGC58218.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis M0579]
 gi|325207519|gb|ADZ02971.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
           NZ-05/33]
          Length = 369

 Score =  215 bits (547), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 124/327 (37%), Positives = 182/327 (55%), Gaps = 9/327 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL+ +      TS NP V C+I +   ++G+G     G PHAEV AL +A
Sbjct: 3   SETDISMMQNALKLAALGRFSTSPNPRVGCVIAQGSQIVGQGFHVKAGEPHAEVHALRQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   G
Sbjct: 63  GEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  
Sbjct: 123 IKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V +LRA+S A+L GIGTVLAD+P L  R    L++  P RI+LD   +L LDS ++    
Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296
               I   E D+  L    +  ++ I+          DL  L+ +L   G+  L+VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYRKHAHVRILMPSETAGGKIDLNSLMRLLADEGIGELIVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +  +F+   L D I+LYRS  ++G G
Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGSG 327


>gi|78222833|ref|YP_384580.1| 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidine
           deaminase [Geobacter metallireducens GS-15]
 gi|78194088|gb|ABB31855.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Geobacter
           metallireducens GS-15]
          Length = 370

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 130/363 (35%), Positives = 199/363 (54%), Gaps = 12/363 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           + M  AL  +R   G TS NP+V C+IV+DG ++G G     G PHAEV AL +AGE AR
Sbjct: 7   KIMKRALALARRGKGKTSPNPAVGCVIVRDGAIVGEGWHRKAGTPHAEVHALRQAGELAR 66

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GA  YVTLEPCSH+G++PPCA  ++E G+ RV V + DP+ +VSGRG++ L   GI +V 
Sbjct: 67  GADVYVTLEPCSHFGKTPPCADALVEAGVGRVFVGMVDPNPKVSGRGIERLRVAGIEVVT 126

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + E+E +     ++         + LK A++ D     A   S  IT   S+  VH LR
Sbjct: 127 GIREAECRRLNEPFVKHVTTGLPFVILKSAMTMDGKTATASGDSRWITNEKSRRYVHKLR 186

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           +  DAI+VG+GTVLADDP+LT R+   +   P+R+++D   ++   ++++     A  ++
Sbjct: 187 SMVDAIMVGVGTVLADDPQLTARIP--RGKDPVRVVVDSSLRIPSGARMLHQESPATTVV 244

Query: 248 VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            T ++D    +        ++ C       DL+ LL  L  RGV S+L+EGG+ +A   +
Sbjct: 245 ATVSEDRNRIVKLESAGAEVLRCHAVMGRIDLRDLLARLGARGVQSILLEGGSELAGEAL 304

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-RD----YFGSDVCLEYIGKN 358
            + L+D  +L+ +   +G             E+   C R +D     FG DV +E   ++
Sbjct: 305 RAGLIDKCVLFYAPKFLGGAAGLGLFGGPSAERMDGCCRLKDVSVRRFGDDVMIEAYPED 364

Query: 359 LCL 361
           LCL
Sbjct: 365 LCL 367


>gi|307293539|ref|ZP_07573383.1| riboflavin biosynthesis protein RibD [Sphingobium chlorophenolicum
           L-1]
 gi|306879690|gb|EFN10907.1| riboflavin biosynthesis protein RibD [Sphingobium chlorophenolicum
           L-1]
          Length = 317

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 132/315 (41%), Positives = 174/315 (55%), Gaps = 41/315 (13%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+AA+  S    GL++ NP+V CLIVK+G V+GRG T  GG PHAE QAL+EA E ARGA
Sbjct: 1   MAAAIALSERGRGLSTPNPNVGCLIVKEGHVVGRGWTQKGGRPHAEAQALDEAMERARGA 60

Query: 71  TAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128
           TAYVTLEPC H   R P CA  +   G+RRVV+ + DPD R  G+G  WL Q+GI VD  
Sbjct: 61  TAYVTLEPCFHLSSRGPRCADLMARAGVRRVVIALRDPDPRTDGQGADWLRQRGIAVDMG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +M  E    +  ++ RQ   R  +TLK+ +S D  I +A   S  ITG  ++   H+ RA
Sbjct: 121 LMAQEAAAAMRGFVLRQTLGRPAVTLKLGLSLDGRIALADGSSRWITGPDARAHAHVERA 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DAILVG GT+ AD P L  RL GL++ SP R++L                        
Sbjct: 181 RHDAILVGGGTLRADAPRLDVRLPGLEDRSPRRVLL------------------------ 216

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           +  D P            +I     D+  L        V  LLVEGGA  A +F+ + LV
Sbjct: 217 SHGDAP--------DGWEVIAA-PEDIAALPQ------VDHLLVEGGAQAAAAFLRADLV 261

Query: 309 DSIILYRSQIVIGEG 323
           D ++LYR+ I+IG+G
Sbjct: 262 DRLLLYRAPILIGDG 276


>gi|325141619|gb|EGC64081.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
           961-5945]
 gi|325141652|gb|EGC64113.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
           961-5945]
 gi|325141685|gb|EGC64145.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
           961-5945]
          Length = 369

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 126/327 (38%), Positives = 181/327 (55%), Gaps = 9/327 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +A
Sbjct: 3   SDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALHQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   G
Sbjct: 63  GEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLAMLEAAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  
Sbjct: 123 IKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V +LRA+S A+L GIGTVLAD+P L  R    L++  P RI+LD   +L LDS ++    
Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296
               I   E D+  L       +I I+      D + DL  L+ +L   G   ++VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +  +F+   L D I+LYRS  ++G G
Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGSG 327


>gi|332967791|gb|EGK06895.1| riboflavin biosynthesis protein RibD [Kingella kingae ATCC 23330]
          Length = 360

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 131/351 (37%), Positives = 191/351 (54%), Gaps = 12/351 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D + M  AL  +      TS NP V C+I     +IG+G     G PHAEV A+ +AGE 
Sbjct: 8   DTQHMQRALELAWQGRFSTSPNPRVGCVIAHGSQIIGQGFHVQAGSPHAEVHAIRQAGEL 67

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSHYGR+PPCA+ +I  G+ RVV  + DP+  V+G+GL  L   GI+V
Sbjct: 68  ARGATAYVTLEPCSHYGRTPPCAEGLIAAGVSRVVAAMTDPNPLVAGKGLAMLQAAGIMV 127

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           ++ ++E E +     +L+R    R  ++LKIA S D    ++   S  ITG  ++  V +
Sbjct: 128 EQGLLEHEARQLNRGFLSRIERNRPFVSLKIAASLDGKTALSNGQSQWITGAAARADVQI 187

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            RAQS A+L GIGTVLAD+P L  R +      P+R++LD   +    S II+      +
Sbjct: 188 QRAQSCAVLTGIGTVLADNPRLNVR-DFPTVRQPLRVVLDSQLRTPKSSHIIQDGQRT-L 245

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           II T  D    A      N+ I        L ++L  L  RG+  L++E G+ +A +F+ 
Sbjct: 246 IITTSPDTQKFAT---YANVEISKQPAPISLPEVLHELAQRGIGELMIEAGSHLASAFLQ 302

Query: 305 SRLVDSIILYRSQIVIGE---GGIPSPLEEGYLEKN--FMCVRRDYFGSDV 350
             L+D I+ Y++  ++G+   G    P  +  L +N  +  V  D  G D+
Sbjct: 303 QDLLDEIVYYQAPKLLGDTARGAFLLPENDDMLRQNPAWQTVSLDRVGDDI 353


>gi|313895132|ref|ZP_07828689.1| riboflavin biosynthesis protein RibD [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312976027|gb|EFR41485.1| riboflavin biosynthesis protein RibD [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 386

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 130/358 (36%), Positives = 194/358 (54%), Gaps = 7/358 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  AL  + +  G TS NP V  +IV+DGIV+G G     G PHAE+ AL  AGE 
Sbjct: 25  DEHFMWEALHLAEFARGRTSPNPLVGAVIVRDGIVVGSGWHRAAGEPHAEIHALRMAGEL 84

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGAT YVTLEPCSH+GR+ PCA+ +I  GI RVV  + DP+  V+G G++ L   GI +
Sbjct: 85  ARGATLYVTLEPCSHHGRTGPCAEAVIAAGIARVVTALSDPNPVVAGHGIERLRAAGIEV 144

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++  E +     +L   V KR  +TLK A++ D         S  ITG  ++ +VH 
Sbjct: 145 TTGVLSEEARRQNEVFLKWVVTKRPFVTLKTAMTLDGKTASRTGASQWITGAEARMRVHE 204

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVGIGTVLAD+P LT RL      +P+R++LD   +   D+K++       +
Sbjct: 205 WRDAHDAILVGIGTVLADNPSLTVRLPHRTGKNPVRVVLDSTARTPHDAKLLTDGAARTI 264

Query: 246 IIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           I V+E   P      +     ++    +  D+  L+  L    +TS+ VEGGA+V  SF+
Sbjct: 265 IAVSERAAPKRTALLQACGAEVVTFGRERVDIPALMDFLGREELTSVFVEGGASVHWSFL 324

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           ++ LVD +  + + +++G    P+ +     E     +R     +D  +E +G ++ +
Sbjct: 325 SAGLVDKVRAFIAPMLMGGADAPTAVGGAGFESPQAALRL----TDTTVERVGADILM 378


>gi|114566748|ref|YP_753902.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114337683|gb|ABI68531.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 367

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 130/330 (39%), Positives = 184/330 (55%), Gaps = 7/330 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM  AL  +    G TS NP V  ++VKDG ++G G     G PHAE+ AL  AG E
Sbjct: 6   DQRFMQRALELAARARGRTSPNPLVGAVLVKDGQILGEGYHQRAGTPHAEINALNTAGRE 65

Query: 67  -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            A+GA+ YV LEPCSHYGR+ PCA  ++E G+  VV+   DP+ +VSGRG+Q L + GI 
Sbjct: 66  RAKGASIYVNLEPCSHYGRTAPCALALVEAGVAEVVIATLDPNPQVSGRGVQILQEAGIK 125

Query: 126 VDRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
               + +     L+ +  + ++  R  ++LK+A++ D  I  +   S  ITG  S+  VH
Sbjct: 126 TRVGVLTAEARELNEFFFKYIQGGRPFVSLKVAMTLDGKIASSNGDSRWITGTASREYVH 185

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR   D I+VGIGTVL DDP L  RL    +  P+RII+D    + LDS I +T     
Sbjct: 186 QLRNIYDGIMVGIGTVLKDDPRLNTRLELEGKRDPVRIIIDGRLDMPLDSNIARTGHEQR 245

Query: 245 VIIVT-ENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
            ++ T EN D   A + R+  + II      D  ++++ L IL    + SLL+EGGA + 
Sbjct: 246 TLVFTAENADQEKANSLRECGLEIIKLGGNPDRLNIEEALDILGKMEIMSLLLEGGAEIN 305

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
              I  +LVD +  + +  +IG    PSPL
Sbjct: 306 SYMIEKQLVDKLYWFIAPKIIGGRSSPSPL 335


>gi|300855387|ref|YP_003780371.1| riboflavin biosynthesis protein RibD [Clostridium ljungdahlii DSM
           13528]
 gi|300435502|gb|ADK15269.1| riboflavin biosynthesis protein RibD [Clostridium ljungdahlii DSM
           13528]
          Length = 372

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 136/370 (36%), Positives = 208/370 (56%), Gaps = 14/370 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M   + D ++M  AL+ +    G  + NP V  +IVK+G +IG+G   + G  HAEV AL
Sbjct: 1   MEKENTDEKYMKEALKLALLGKGFVNPNPLVGAVIVKNGKIIGKGYHRFFGGAHAEVYAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAG+ A+GA  YVTLEPCSHYG++PPCA+ I+E GI++VV+   DP+  VSGRG++ L 
Sbjct: 61  REAGDNAQGADLYVTLEPCSHYGKTPPCAKAIVEAGIKKVVIGSVDPNPLVSGRGVKILR 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
            + I +V  +ME E       +++    K   + LK  V+ D  I      S  ITG  S
Sbjct: 121 DENIEVVTGVMEREAVKINEIFMSYIKSKLPFVILKSGVTLDGKIATVSGESKWITGEKS 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           + +VH +R +  AI+VG+GTV+ DDP LT RL   +  SP  +I+D   ++ ++S+I KT
Sbjct: 181 RLKVHKMRNRVMAIMVGVGTVILDDPLLTTRLEE-KCKSPKAVIVDSKLRVPVESQIFKT 239

Query: 240 ALLAPVIIV-TENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVE 293
           +    +II  TE  D V A + +   +NI+ C        DLK L   L   G+ S+LVE
Sbjct: 240 SREREIIIACTEKFDKVKAESLKAMGVNIVVCTENKEGRVDLKYLTKKLGEMGIDSVLVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG-SDVCL 352
           GG+ +  S + S +V+ +I + +  ++G     + + EGY   N      D     D+C 
Sbjct: 300 GGSELNFSALKSGIVNKVIYFIAPKILGGKNAKTSV-EGYGIGNL----SDSIKLKDICA 354

Query: 353 EYIGKNLCLQ 362
           E +G+++ +Q
Sbjct: 355 ENVGEDIMIQ 364


>gi|288957859|ref|YP_003448200.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Azospirillum sp.
           B510]
 gi|288910167|dbj|BAI71656.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Azospirillum sp.
           B510]
          Length = 376

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 151/337 (44%), Positives = 196/337 (58%), Gaps = 10/337 (2%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           +P    D R M AAL  +   +G T  NP+V C++V+DG VIGRG T  GG PHAE +AL
Sbjct: 4   LPDPETDLRHMRAALALAGRGLGRTWPNPAVGCVLVRDGAVIGRGWTQPGGRPHAETEAL 63

Query: 61  EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
             A      A GATAYVTLEPC+HYGR+PPCA  ++E  + RVVV   DPD RV+G GL 
Sbjct: 64  ARARACSGGAEGATAYVTLEPCNHYGRTPPCALALVEARVARVVVACQDPDPRVAGGGLA 123

Query: 118 WLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
            L   GI V   + E+E       +  R    R  +T KIA + D  I  A   S  ITG
Sbjct: 124 RLRDAGIAVTTGLCEAEALALNEGFFNRITRNRPLVTCKIASTLDGRIATATGESQWITG 183

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
             ++   H LRA  DAILVGIGT LADDPELTCRL GL++ SP+R+++D   +L   +K+
Sbjct: 184 PTARAWGHRLRAGHDAILVGIGTALADDPELTCRLPGLEDRSPVRVVMDSGLRLPATAKL 243

Query: 237 IKTALLAPVIIVT-ENDDPVLALAFRKKNINIIYC----DCR-DLKKLLTILVGRGVTSL 290
              A   P  +VT  + DP+ A A     + I+      D R D    LT L  RG+T L
Sbjct: 244 ATGARRIPTWVVTGPSPDPMRAGALAALGVEIVPAAADGDGRVDPAAALTALAARGITRL 303

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           LVEGGAAVA + + + LVD +  +R+  +IG  G+P+
Sbjct: 304 LVEGGAAVAGALLGAGLVDRLEWFRAASLIGGDGLPA 340


>gi|260434096|ref|ZP_05788067.1| riboflavin biosynthesis protein RibD [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417924|gb|EEX11183.1| riboflavin biosynthesis protein RibD [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 366

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 135/358 (37%), Positives = 203/358 (56%), Gaps = 11/358 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++  D R+M+ AL   R   G+   NP+V C++VK+G ++GRG T  GG PHAE  AL +
Sbjct: 1   MTDTDKRYMALALSLGRRGQGMCWPNPAVGCVVVKNGRIVGRGWTQPGGRPHAETVALAQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  ARG+TAYV+LEPC+H+G++PPCAQ +I+ G+ RVV  ++D D RV+G G + L   
Sbjct: 61  AGLLARGSTAYVSLEPCAHHGKTPPCAQALIDAGVARVVSAIEDSDPRVAGLGFEMLRAA 120

Query: 123 GIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ V   + ++     HA +LTR  + R  +TLK+A S D  I  +   S  IT   S+ 
Sbjct: 121 GVDVTTGVLADQAARDHAGFLTRTEQGRPFVTLKLACSFDGRIATSTGQSKWITSPQSRR 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH +RA+ DA++VG GT  ADDP LT R  G+ +  P+R+++  H  + L  ++ ++A 
Sbjct: 181 VVHAMRARHDAVMVGAGTARADDPSLTVRDLGVAQQ-PVRVVVSRHLDVPLLGQLARSAS 239

Query: 242 LAPVIIV-TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
             PV +    + DP  A A+R     +I C  +    D   LL  L   G+T +  EGG+
Sbjct: 240 EVPVWLCHGPSPDPERARAWRGLGAKLIPCALQDHHIDPADLLQQLGQEGLTRVFCEGGS 299

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDV 350
           A+A S + + LVD ++ + + + IG  G+P+    G  E      F  V     G DV
Sbjct: 300 ALAASLLAADLVDELVGFTAGMAIGAEGLPAIGAMGLSELADAPRFDLVETKIVGPDV 357


>gi|307718159|ref|YP_003873691.1| hypothetical protein STHERM_c04460 [Spirochaeta thermophila DSM
           6192]
 gi|306531884|gb|ADN01418.1| hypothetical protein STHERM_c04460 [Spirochaeta thermophila DSM
           6192]
          Length = 362

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 122/337 (36%), Positives = 190/337 (56%), Gaps = 10/337 (2%)

Query: 23  GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
           G TS NP V  ++VKDG V+G G     G PHAEV AL EAGEEARGA  YVTLEPC H+
Sbjct: 21  GRTSPNPMVGAVVVKDGRVVGEGFHERAGLPHAEVAALSEAGEEARGAEMYVTLEPCCHW 80

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAY 141
           GR+PPC   I++ G+RRVVV   DP+ +V+G+GL  L++ G+ V+  ++  E +     +
Sbjct: 81  GRTPPCTDAILKAGVRRVVVACRDPNPQVAGKGLSILAEAGVEVEVGVLSREARWLNRGF 140

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
           ++R    R  +  K+A S D  I +    S  ITG  ++ +VH LRA SD ++ GIGTVL
Sbjct: 141 ISRMERGRPWVVAKVAASLDGRIALPDGRSKWITGEEARWEVHRLRAGSDVLVTGIGTVL 200

Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
           ADDP  T R+ G +   P  ++LD   +L + +++++      V++V    D        
Sbjct: 201 ADDPAFTVRVPGGEGRDPGVVVLDTRGRLPVGARVVREGT---VVMVGPGVDAGWRGEVE 257

Query: 262 KKNINIIYCDCRDLK---KLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
           ++ + ++    RD K   + ++  +G  GV   +VE GA V  +F+ + +VD ++++ + 
Sbjct: 258 RRGVRVVEVGIRDGKVDVQAVSRWLGEEGVNVAMVEAGAGVTGAFLEAGMVDELVVFVAP 317

Query: 318 IVIGE--GGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            V+GE  G +   + EG  E+ +        G DV +
Sbjct: 318 RVLGEGRGWVEGRVVEGLGEREWEVREVRRVGEDVMV 354


>gi|322420507|ref|YP_004199730.1| riboflavin biosynthesis protein RibD [Geobacter sp. M18]
 gi|320126894|gb|ADW14454.1| riboflavin biosynthesis protein RibD [Geobacter sp. M18]
          Length = 374

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 126/328 (38%), Positives = 195/328 (59%), Gaps = 7/328 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S+   + M  AL  +R  VG T+ NP+V C+IV+DG V+G+G     G PHAEV AL  
Sbjct: 1   MSADHLKMMRLALSEARKGVGKTAPNPAVGCVIVRDGEVVGKGWHKKAGTPHAEVHALRA 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A GA AYVTLEPCSH+G++PPCA+ +IE  + RV V + DP+  VSGRG++ L   
Sbjct: 61  AGELAAGADAYVTLEPCSHFGKTPPCARALIEARVGRVFVAMVDPNPLVSGRGIKMLQDA 120

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V+  ++E+E       ++   + KR ++ LK A++ D     A   S  +T   S+ 
Sbjct: 121 GIEVEVGLLEAESLEINRPFVKWILTKRPYVVLKSALTLDGKSATATGDSKWVTCDRSRR 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +VH LR + DAI+VG+GTV+ DDP LTCR+ G ++  P+R+I+D   ++   + +     
Sbjct: 181 EVHRLRGRLDAIMVGVGTVIKDDPLLTCRVPGGKD--PLRVIVDSTLRIPRHAALFSLRS 238

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAA 297
            A  +I T   D     A     + ++ C+ +D +     LLT L  RGV S+L+EGG+ 
Sbjct: 239 EAKTVIATCCADLARIDAVAAHGVEVLVCNEKDGRVDPDDLLTKLGERGVQSILLEGGSH 298

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGI 325
           +A +F+ + L+D  +L+ +  ++G  G+
Sbjct: 299 LAGAFLRAGLIDRCMLFLAPKLVGGAGM 326


>gi|294498727|ref|YP_003562427.1| riboflavin biosynthesis protein RibD [Bacillus megaterium QM B1551]
 gi|294348664|gb|ADE68993.1| riboflavin biosynthesis protein RibD [Bacillus megaterium QM B1551]
          Length = 363

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 120/336 (35%), Positives = 194/336 (57%), Gaps = 6/336 (1%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M+ AL+ ++   G T  NP V  +IV D  ++G G     G PHAE+ AL  AGE+A+G
Sbjct: 7   YMNIALQNAKATKGQTDPNPLVGSVIVNDNRIVGIGTHLKAGEPHAEIHALRMAGEQAKG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           ATAYVTLEPCSH+GR+ PCA+ ++E G+++VV+   DP+  V+G G++ L   GI ++  
Sbjct: 67  ATAYVTLEPCSHHGRTGPCAEALVEAGVKKVVIATLDPNPLVAGNGVKILENAGIEVITG 126

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + E E +     +    V K+  ++LK A++ D  I  A   S  IT   ++  VH LR 
Sbjct: 127 VCEEESRQMNEVFNKYIVTKKPFVSLKSAITLDGKIATASSHSKWITSEEARLDVHQLRH 186

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           ++  ILVG+ TV+ D+PELT R+ G +  SP+RI++D   ++ L+SK+   +L    +  
Sbjct: 187 ETAGILVGVNTVIKDNPELTTRIEGGR--SPIRIVMDSKLRMPLESKLATDSLAPTWVFT 244

Query: 249 TENDDPVLALAFRKKNINIIYCDCRD---LKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           ++           K+ + +      D   L+ +L+IL  + V+SLL+EGG  V  +F+ +
Sbjct: 245 SQGYSKEKKEQLEKQGVEVFVTSGEDKVNLEDMLSILGEKFVSSLLIEGGGEVNAAFLEN 304

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341
           RL+D ++LY +  + G    P+ LE   +EK +  V
Sbjct: 305 RLIDKLVLYMAPKLSGGKEAPTFLEGKGVEKMWDAV 340


>gi|254459689|ref|ZP_05073105.1| riboflavin biosynthesis protein RibD [Rhodobacterales bacterium
           HTCC2083]
 gi|206676278|gb|EDZ40765.1| riboflavin biosynthesis protein RibD [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 364

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 131/339 (38%), Positives = 190/339 (56%), Gaps = 19/339 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  +R  +G T  NP+V C+IV  G ++GRG T  GG PHAEV AL +AG+ 
Sbjct: 5   DQAYMKMALSLARRGLGRTWPNPAVGCVIVNAGRIVGRGWTQVGGRPHAEVVALVQAGKR 64

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GATAYVTLEPC+H+G++PPC++ +IE GI RVV  ++D D RVSGRG   L   G++V
Sbjct: 65  ANGATAYVTLEPCAHHGQTPPCSEALIEAGIARVVAAMEDSDPRVSGRGFAQLRGAGVVV 124

Query: 127 DR------MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           +         ES    FL   + R       +TLK+A+S D  I      S  ITG  ++
Sbjct: 125 ETGICAKDAAESNAGFFLKTEVGRPF-----VTLKLALSLDGRIATLTGDSQWITGSEAR 179

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             VH +RA  DA+L+G GT   DDP LT R  G+  H P+R++     K+ L+S + KTA
Sbjct: 180 RAVHAMRATHDAVLIGAGTARGDDPSLTVRGLGIG-HQPVRVVAAQSLKIDLESSLAKTA 238

Query: 241 LLAPVIIVTEND--DPVLALAFRKKNINIIYC--DCRDLK--KLLTILVGRGVTSLLVEG 294
              PV +   +D  D   A A+      +I C  D   L+  +++  L  +G+T +  EG
Sbjct: 239 RDVPVWLCHGSDVKDEDRA-AWIDLGAELIACETDASGLEPHQMMQALGHKGLTRVFCEG 297

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           G  +A S + + LVD ++++ + + IG  G+      G+
Sbjct: 298 GGHLAASLLRADLVDRLVIHSAGVAIGGDGLAGLASMGH 336


>gi|312143490|ref|YP_003994936.1| riboflavin biosynthesis protein RibD [Halanaerobium sp.
           'sapolanicus']
 gi|311904141|gb|ADQ14582.1| riboflavin biosynthesis protein RibD [Halanaerobium sp.
           'sapolanicus']
          Length = 381

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 133/370 (35%), Positives = 200/370 (54%), Gaps = 28/370 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D R+M+ AL  ++   G  S NP V  ++VK+G +IG G   + G PHAEV AL+EAG+ 
Sbjct: 9   DIRYMARALEIAKKGEGSASPNPMVGAVLVKNGEIIGEGYHKFYGGPHAEVYALKEAGQN 68

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A  A  Y+TLEPCSHYG++PPCA  +I+ GI+R V+ + DP+  VSGRG++ L + GI V
Sbjct: 69  ANNADIYLTLEPCSHYGKTPPCADKLIKSGIKRAVIAMVDPNPEVSGRGIELLKEAGIEV 128

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  +M  + K     +L        ++ LK A + D  I  +   S  IT   ++ + H 
Sbjct: 129 ELGLMAEKAKDLNEVFLKYITSDYPYVYLKKAQTLDGFIASSTGHSKWITNEKARLEGHK 188

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR + DAI+VGIGTVLADDP LT RL        +R+ILDP   + LD+KII     A  
Sbjct: 189 LRHKVDAIMVGIGTVLADDPSLTTRLEEQGGIDSLRVILDPELDMPLDAKIINQESTAST 248

Query: 246 IIVT-------------ENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGV 287
           +++              E  + +LA    K N++II     +     L  +L  L    +
Sbjct: 249 LLIASEASLESNSAALMEKKEKLLA----KNNVDIIAVPLEEEGFLNLDFILRQLHDLNI 304

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILY-RSQIVIGEGGIPSPLEEG----YLEKNFMCVR 342
           +S+L+EGGA +++SF+N  L+D    +   +I  G+ GI S   +G       K+   + 
Sbjct: 305 SSILLEGGAKLSYSFLNKGLIDKFYYFIAPKIYGGDDGISSFCGQGPKLMSDSKDIKILD 364

Query: 343 RDYFGSDVCL 352
           R + G ++ L
Sbjct: 365 RRFLGDNILL 374


>gi|331270609|ref|YP_004397101.1| riboflavin biosynthesis protein RibD [Clostridium botulinum
           BKT015925]
 gi|329127159|gb|AEB77104.1| riboflavin biosynthesis protein RibD [Clostridium botulinum
           BKT015925]
          Length = 372

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 140/381 (36%), Positives = 205/381 (53%), Gaps = 32/381 (8%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D R+M  A+  S+  +G T  NP V  +IVKD  +IG G   Y G  HAE+ AL+   E
Sbjct: 1   MDLRYMKRAINLSKLGIGHTYPNPLVGAVIVKDNKIIGEGYHQYFGENHAEINALKNVKE 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +  GAT YVTLEPCSHYG++PPCA  I++ GI++V++ + DP+  V+GRG++ L   GI 
Sbjct: 61  DVNGATMYVTLEPCSHYGKTPPCANAIVKSGIKKVIIGMRDPNSLVAGRGIRILKNNGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           ++  ++E E K     ++     K     LK A++ D  I      S  I+  IS+  VH
Sbjct: 121 VIQGVLEEEIKKVNEIFIKYITTKLPFCILKTAMTLDGKIATRDGDSKWISNEISRQYVH 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            +R +   I+VGIGT+L D+P LT RLN  +     RII+D   ++ ++SK++     A 
Sbjct: 181 EIRHKVAGIMVGIGTILKDNPSLTTRLNNKKGRDSTRIIIDSKGRIPVESKVLNLESEAN 240

Query: 245 VIIVTENDDPVLALAFRKKNINII-----------YCDCR-DLKKLLTILVGRGVTSLLV 292
            IIVT        LA R+K I +I            CD R DLK L+  L  R + S+L+
Sbjct: 241 TIIVT------TELASREK-IEVIRSKGAEVIITPLCDDRVDLKYLMRELGERNIDSVLL 293

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-------NFMCVRRDY 345
           EGGA + +S +N  +VD +I + S  +IG     +P+  G + K       N   ++   
Sbjct: 294 EGGAELNYSALNEGIVDKVISFISPKIIGGKEAKTPV--GGVGKSAISECVNLENIKVSQ 351

Query: 346 FGSDVCLE-YIG--KNLCLQE 363
           F  D+ +E YI   K LC QE
Sbjct: 352 FEEDIVIEGYIKGEKKLCSQE 372


>gi|295696432|ref|YP_003589670.1| riboflavin biosynthesis protein RibD [Bacillus tusciae DSM 2912]
 gi|295412034|gb|ADG06526.1| riboflavin biosynthesis protein RibD [Bacillus tusciae DSM 2912]
          Length = 371

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 132/366 (36%), Positives = 205/366 (56%), Gaps = 13/366 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  +IVKDG ++G+G     G PHAEV AL  AGE+
Sbjct: 3   DEDWMRWALQLAASARGQTSPNPMVGAVIVKDGELVGQGAHLKAGGPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGAT YVTLEPC H+GR+PPC++ +IE G+ RVVV + DP+  V+G G++ L Q G+ V
Sbjct: 63  ARGATVYVTLEPCDHHGRTPPCSRALIEHGVARVVVAMVDPNPLVAGGGIRRLRQAGVKV 122

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  ++E + +     ++ R    R  +  KIA++ D  I      S  ITG  ++ +VH 
Sbjct: 123 EVGLLEKDARALNRGFIQRMTRGRPWVIAKIAMTLDAQIATRTGESRWITGEKAREKVHE 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
           LR++ DA++ G+GTV+ADDP LT R   G     P+R++LD   ++  D++I+ T     
Sbjct: 183 LRSRVDAVVTGVGTVIADDPRLTARPPGGGLPRQPLRVVLDSRLRIPADAQILSTVSAPT 242

Query: 245 VIIVTENDDP---VLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAV 298
           V+       P   V  LA R  ++ +I  D +   DL+++   L   GV + LVE G  +
Sbjct: 243 VVCAGRGLAPAERVAELAARGVDVWLIDPDSQGGLDLRQVFGRLGEAGVNTALVEAGGRL 302

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
             S   S LVD ++ + +  ++   GIP+   EG +E+     + +  G    +E +G++
Sbjct: 303 QGSVFRSGLVDEVVFFLAPKLLMGSGIPALAGEG-VERLAQSAQLEITG----VETVGED 357

Query: 359 LCLQEL 364
           L +  L
Sbjct: 358 LKVTAL 363


>gi|218437502|ref|YP_002375831.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7424]
 gi|218170230|gb|ACK68963.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7424]
          Length = 362

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 120/335 (35%), Positives = 187/335 (55%), Gaps = 3/335 (0%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            SSFD   M   +  +R   G TS NP V  +IVKDG VIG G     G PHAEV AL++
Sbjct: 2   TSSFDREMMQHCINLARQAAGKTSPNPMVGAVIVKDGQVIGEGFHPKAGQPHAEVFALKQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A E+A+GAT Y++LEPC+HYGR+PPC + +IE  + +VV+ + DPD RVSG G++ L + 
Sbjct: 62  AAEQAKGATIYISLEPCNHYGRTPPCTEALIEAQVNKVVIGMIDPDPRVSGSGVKRLQEA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +V  + E   +     ++ R + K+    LK A++ D  I      S  ITG  S+ 
Sbjct: 122 GIEVVVGVEEDACRRLNEGFIHRVLSKKPFGILKYAMTLDGKIATTSGHSAWITGEASRR 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH LRA  DA+++G  TV  D+P LT   +G+  H+P+R+++     L L++ + +T+ 
Sbjct: 182 LVHHLRASCDAVIIGGNTVRQDNPHLTS--HGVSSHNPLRVVMSRSLNLPLEAHLWETSQ 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           +  ++   E  +P L     K+ + +I        +++  L  RG +S+L E G  +A  
Sbjct: 240 VPTLVFTQEGMNPALQKQLLKRQVEVIELKSLSPSEVMHHLYERGFSSVLWECGGILAAR 299

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
            I   +V  ++ + +  +IG    PSP+ +  LEK
Sbjct: 300 AIAEGMVQKVMAFIAPKIIGGNTAPSPVGDLGLEK 334


>gi|121634268|ref|YP_974513.1| putative diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/phosphoribosylamino)uracil reductase
           [Neisseria meningitidis FAM18]
 gi|120865974|emb|CAM09711.1| putative diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/phosphoribosylamino)uracil reductase
           [Neisseria meningitidis FAM18]
 gi|254670038|emb|CBA04840.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Neisseria meningitidis alpha153]
 gi|325131464|gb|EGC54171.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis M6190]
 gi|325137571|gb|EGC60152.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
           ES14902]
          Length = 369

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 125/327 (38%), Positives = 179/327 (54%), Gaps = 9/327 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +A
Sbjct: 3   SDTDISMMETALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   G
Sbjct: 63  GEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  
Sbjct: 123 IKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V +LRA+S A+L GIGTVLAD+P L  R    L++  P RI+LD   +L LDS ++    
Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296
               I   E D+  L       +I I+          DL  L+ +L   G   ++VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +  +F+   L D I+LYRS  ++G G
Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGSG 327


>gi|225181336|ref|ZP_03734780.1| riboflavin biosynthesis protein RibD [Dethiobacter alkaliphilus AHT
           1]
 gi|225167917|gb|EEG76724.1| riboflavin biosynthesis protein RibD [Dethiobacter alkaliphilus AHT
           1]
          Length = 367

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 126/329 (38%), Positives = 188/329 (57%), Gaps = 7/329 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D R+M  AL  +    G TS NP V  ++VKDG  +G G     G PHAE+ ALEEAGE 
Sbjct: 4   DERYMWLALDLAAQGQGTTSPNPMVGAVLVKDGETVGTGYHQKAGGPHAEIIALEEAGEA 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGAT YVTLEPCSH G++PPC   II  G+R+VVV + DP+  V+G GL+ L + GI V
Sbjct: 64  ARGATLYVTLEPCSHTGKTPPCVDRIIAAGVRKVVVAMQDPNELVNGLGLKKLQEAGIKV 123

Query: 127 DRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +  E  + L+    + +  +R  +T+K A++ D  I      S  I+G  S+   H 
Sbjct: 124 KSGVLEEKALRLNEVFVKYITSRRPFVTMKAAMTMDGKIATRTKASRWISGERSREFGHR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR  +DAI+VGIGT+LAD+P LT RL    ++ P+RI++D      LDSK++       +
Sbjct: 184 LRHHTDAIMVGIGTLLADNPSLTTRLPEGGKN-PLRIVVDSKANTPLDSKVVAENPEKTL 242

Query: 246 IIVTE--NDDPVLALAFRKKNINIIYCDCRD---LKKLLTILVGRGVTSLLVEGGAAVAH 300
           I VT+  + + + AL  +   + ++  D      L  L+  L    ++S+LVEGG+ + +
Sbjct: 243 IFVTDLADQERISALQAKGVGVEVLPADPEGRVPLDLLMDNLGKHEISSVLVEGGSVLNY 302

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPL 329
           S + S LVD +  + + ++ G    P+P+
Sbjct: 303 SLLASGLVDKVYFFMAPLIFGGDTAPTPV 331


>gi|91763228|ref|ZP_01265192.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|91717641|gb|EAS84292.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 366

 Score =  213 bits (541), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 125/359 (34%), Positives = 193/359 (53%), Gaps = 16/359 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  AL  ++   GLT  NPSV C+IVK+  ++  G T + G PHAE  A++ + E 
Sbjct: 12  DKIFMELALNLAKARHGLTGINPSVGCVIVKNNKILSIGQTGFKGTPHAEFNAIKNSHEN 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             G+  YVTLEPCSHYG++PPC   II+  I+ VV  V+D D +V G+ L+ L  K I+V
Sbjct: 72  IEGSKMYVTLEPCSHYGKTPPCTNIIIKNKIKEVVYGVEDIDKKVKGKTLKILKSKNILV 131

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
            + +++ +   F   Y   + +   ++T KIA+S++N+I      +  I+   +    H 
Sbjct: 132 KKDLLKKQINKFYAPYFFNRKKNLPYVTGKIAISKNNLI--YSKDTKRISDIHTDKFTHF 189

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR ++D++++   T+  DDP+L CR+ GL + SP RIILD + ++  +S I KTA     
Sbjct: 190 LRYKNDSLMISSKTLNKDDPKLNCRIKGLSKFSPKRIILDRNLEIKKNSYIFKTANKDNT 249

Query: 246 IIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           II   N    + L  +KK I +I      +  D+K +L  L   G  +LLVEGG  ++  
Sbjct: 250 IIFYHNAKAEVKLMLKKKGITLIKSKLNKNSFDIKSILMKLYVLGCRNLLVEGGNDLSKH 309

Query: 302 FINSRLVDSIILYR-----SQIVI-GEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
            I  +L +   LY+     S++V   E G    L++ Y  K F   ++   G DV   Y
Sbjct: 310 IIKKKLFNEFYLYKCSKSLSKLVNHKEFGFLKELKKNYKNK-FKINKK--LGKDVITLY 365


>gi|217972396|ref|YP_002357147.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS223]
 gi|217497531|gb|ACK45724.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS223]
          Length = 384

 Score =  213 bits (541), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 130/336 (38%), Positives = 192/336 (57%), Gaps = 18/336 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D + MS A++ +R     T  NPSV C+IVKD  ++G G     G PHAEV AL  A
Sbjct: 8   SVLDTQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHALRMA 67

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPCSHYGR+PPCA  +I  G++RVVV V+DP+ +V+GRG+Q L   G
Sbjct: 68  GEHARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVAGRGIQMLRDAG 127

Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I VD  +  +    L+  ++ R       +T+K+A S D    ++   S  ITG  S+  
Sbjct: 128 IEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESRRD 187

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR---LNGLQEH-------SPMRIILDPHFKLSL 232
           V  LR +S A++ GI T+LADDP L  R   L G+++         P+R+ILD   +L L
Sbjct: 188 VQRLRLRSCALVTGIETILADDPSLNVRYQELGGIKDSVTEAQLLQPLRVILDSRARLPL 247

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVT 288
            +  +  A+++P+I+V+    P    A    +++ +          L +LL+ L G+   
Sbjct: 248 SAACL--AIVSPIILVSTVAYPAEFQAQLPSHVSCLVLPAIAGRVSLPELLSYL-GQSCN 304

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            +LVE GA +A +F+   L D ++LY++  ++G  G
Sbjct: 305 HVLVEAGATLAGAFLAQGLADELVLYQAMKILGGQG 340


>gi|218767600|ref|YP_002342112.1| putative diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/phosphoribosylamino)uracil reductase
           [Neisseria meningitidis Z2491]
 gi|121051608|emb|CAM07908.1| putative diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/phosphoribosylamino)uracil reductase
           [Neisseria meningitidis Z2491]
          Length = 369

 Score =  213 bits (541), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 126/327 (38%), Positives = 181/327 (55%), Gaps = 9/327 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +A
Sbjct: 3   SDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   G
Sbjct: 63  GEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLAMLEAAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  
Sbjct: 123 IKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V +LRA+S A+L GIGTVLAD+P L  R    L++  P RI+LD   +L LDS ++    
Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296
               I   E D+  L       +I I+      D + DL  L+ +L   G   ++VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +  +F+   L D I+LYRS  ++G G
Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGGG 327


>gi|298369934|ref|ZP_06981250.1| riboflavin biosynthesis protein RibD [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298281394|gb|EFI22883.1| riboflavin biosynthesis protein RibD [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 367

 Score =  213 bits (541), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 127/321 (39%), Positives = 184/321 (57%), Gaps = 8/321 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D R M  AL  +R     TS NP V C+I   G ++G+G     G PHAEV AL +AGE 
Sbjct: 6   DVRMMQNALALARLGRFSTSPNPRVGCVIAHGGQIVGQGFHVKAGEPHAEVHALRQAGEM 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSHYGR+PPCA+ +I  G+ RVV  + DP+  V+G+GL  L    I  
Sbjct: 66  ARGATAYVTLEPCSHYGRTPPCAEALIRSGVARVVAAMTDPNPLVAGKGLAMLEAADIRT 125

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  ++E+E +     +L+R    R  + +K A S D    ++   S  ITG  ++  V +
Sbjct: 126 ESGLLETEARELNRGFLSRIERGRPFVRIKCAASLDGKTALSDGLSKWITGEAAREDVQI 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRA+S A++ G+GTVLAD+P+L  R        P+R+I D   +   D +II+    +PV
Sbjct: 186 LRAESCAVVTGVGTVLADNPQLNVRAFPTVRQ-PVRVIADSRLQTPPDCRIIRDG-GSPV 243

Query: 246 IIVTENDDPVLALAF-RKKNINIIYC---DCR-DLKKLLTILVGRGVTSLLVEGGAAVAH 300
           +I T + D     AF R  ++ II     D R DL  LL IL  +G   ++VE GA ++ 
Sbjct: 244 LIATLSQDADRLNAFSRFPHVEIIRPSEKDGRIDLADLLKILAAKGCGEVMVEAGAVLSS 303

Query: 301 SFINSRLVDSIILYRSQIVIG 321
           +F+   L D ++LY++  ++G
Sbjct: 304 AFLAEDLADELVLYQAPKILG 324


>gi|258515514|ref|YP_003191736.1| riboflavin biosynthesis protein RibD [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257779219|gb|ACV63113.1| riboflavin biosynthesis protein RibD [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 367

 Score =  213 bits (541), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 137/366 (37%), Positives = 195/366 (53%), Gaps = 22/366 (6%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D ++M  AL  +    G TS NP V  +IVK+G V+GRG     G PHAE+ AL+EAGE
Sbjct: 1   MDEQYMKMALDLAARARGRTSPNPMVGSVIVKNGAVVGRGYHKKAGTPHAEIHALKEAGE 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            ARGAT YVTLEPC H+GR+ PC + I+  GI+R VV + DP+  V+G+GL  L + G+ 
Sbjct: 61  AARGATIYVTLEPCCHHGRTGPCTEAILSAGIKRAVVAMTDPNPLVAGKGLDILRKAGVE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V  ++  E       ++         + LK A+S D  I      S  ITG  S+  VH
Sbjct: 121 VVSGLLAEEAAKLNEVFIKYVSTGMPFVLLKTAMSLDGKIAAYTGHSRWITGSASRAYVH 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL----NGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            LR   DAIL+GIGT++AD+P LT RL    +G++   P+R+I+D   +   ++K++   
Sbjct: 181 HLRDSYDAILIGIGTLMADNPSLTARLSCPEDGVKGKDPVRVIVDSLARTPPEAKVLTQI 240

Query: 241 LLAPVIIVTENDDP---VLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGA 296
             AP II      P   V  L      I I     + DL  L   L    +TS+L+EGGA
Sbjct: 241 SAAPTIIAITAAAPEERVQKLVAAGAQIIIAGNGPKIDLPYLFKSLTAIDITSILIEGGA 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL---------EEGYLEKNFMCVRRDYFG 347
           AV  S +  +L D ++ + +  +IG    P P+         E   LE+  + V+R  F 
Sbjct: 301 AVNASVLEQKLADKLLWFIAPKIIGGKEAPGPVGGRGVAAVSEALLLER--ISVQR--FE 356

Query: 348 SDVCLE 353
            D+CLE
Sbjct: 357 EDICLE 362


>gi|323141090|ref|ZP_08075995.1| riboflavin biosynthesis protein RibD [Phascolarctobacterium sp. YIT
           12067]
 gi|322414466|gb|EFY05280.1| riboflavin biosynthesis protein RibD [Phascolarctobacterium sp. YIT
           12067]
          Length = 388

 Score =  212 bits (540), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 147/374 (39%), Positives = 207/374 (55%), Gaps = 23/374 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D  +M  AL  +    G TS NP V C+IV  +G ++G G     G PHAEV AL EA +
Sbjct: 17  DEAYMQRALELALQAEGNTSPNPMVGCVIVDAEGNIVGEGYHHKAGEPHAEVNALAEAKQ 76

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            A+GATAYVTLEPC+HYGR+ PC   +   GI +VVV   DP+ +V+G+GL++L  +GI 
Sbjct: 77  MAQGATAYVTLEPCAHYGRTGPCCVALARAGIGKVVVACLDPNPKVAGQGLEYLRLQGIE 136

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V  + E E K     + T   ++R  ITLK A++ D  I  A   S  ITG  ++   H
Sbjct: 137 VVTGVCEKEAKRLNERFFTWITKQRPFITLKYAMTLDGKIATATGDSKWITGEEARTFAH 196

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR Q DA+LVGIGTVL DDPELT RL  ++  +P+R++LD   K+SL + ++    LA 
Sbjct: 197 RLRKQHDAVLVGIGTVLEDDPELTTRL--VRGKNPVRVVLDSSLKISLMAAVLNP--LAD 252

Query: 245 VIIVTEND-DPVLALAFRK-KNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAV 298
            II T  D D V A A     N+ ++     D    + +++  L  RG+ SLLVEGG+A+
Sbjct: 253 TIIFTGLDSDIVKAEALAALPNVEVVRLPLADGVLPVAQVVQALAERGIASLLVEGGSAI 312

Query: 299 AHSFINSRLVDSIILYRSQIVIGE-------GGIPSPL-EEGYLEKNFMCVRRDYFGSDV 350
             +  ++ L D +  + +  +IG        GG  S L E G+       V  +  GSDV
Sbjct: 313 HGALFDAGLADRVCAFVAPKLIGGAAALPPVGGAGSSLVETGW---QLTEVEMEKLGSDV 369

Query: 351 CLEYIGKNLCLQEL 364
            +  +   L  QEL
Sbjct: 370 LITGLVPELDKQEL 383


>gi|319409860|emb|CBY90173.1| riboflavin biosynthesis protein RibD [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (riboflavin-specific deaminase) and
           5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
           reductase) [Neisseria meningitidis WUE 2594]
          Length = 369

 Score =  212 bits (540), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 126/327 (38%), Positives = 180/327 (55%), Gaps = 9/327 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  ALR +      TS NP V C+I     V+G+G     G PHAEV AL +A
Sbjct: 3   SDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQVVGQGFHVKAGEPHAEVHALHQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+G   L   G
Sbjct: 63  GEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGFAMLEAAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  
Sbjct: 123 IKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V +LRA+S A+L GIGTVLAD+P L  R    L++  P RI+LD   +L LDS ++    
Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296
               I   E D+  L       +I I+      D + DL  L+ +L   G   ++VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +  +F+   L D I+LYRS  ++G G
Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGGG 327


>gi|15602614|ref|NP_245686.1| hypothetical protein PM0749 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721046|gb|AAK02833.1| RibD [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 376

 Score =  212 bits (540), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 127/336 (37%), Positives = 188/336 (55%), Gaps = 15/336 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  ++ D  +M  AL  +      T+ NPSV C++VKDGI++GRG     G  HAEV AL
Sbjct: 2   MTFTAQDVVYMQMALELAEKGQFTTTPNPSVGCVLVKDGIIVGRGFHVKAGEAHAEVMAL 61

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAGE ARGATAYVTLEPCSH+GR+PPCAQ +I+ G+ +VV  + DP+ +V+GRGL  LS
Sbjct: 62  REAGENARGATAYVTLEPCSHFGRTPPCAQGLIDAGVVKVVSAMCDPNPQVAGRGLSMLS 121

Query: 121 QKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI     + +E   +L+  +L R    R ++ LK+A+S D    MA   S  ITG ++
Sbjct: 122 DAGIESAVGLLAEKAEWLNRGFLKRMRTGRPYVQLKMAMSLDGRTAMANGESKWITGELA 181

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHF 228
           +  V   RA++ AIL    TVLADDP L  R   L           Q   P+R+ILD   
Sbjct: 182 RADVQAERAKASAILSTSATVLADDPLLNVRWQQLPDKVKADYTQAQLRQPVRVILDSQH 241

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           ++    ++   +L +PV +V++    +L      + I  +      L  L+  L  R + 
Sbjct: 242 RVQPSHRLF--SLSSPVWLVSQTARSLLEFPAHCEQIQ-LSASTNALADLMAELGQRQIN 298

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           +L +E GA +A + I ++LVD +I+Y +  ++G+  
Sbjct: 299 TLWIEAGATLAGALIEAKLVDELIIYIAPKLLGDAA 334


>gi|304410191|ref|ZP_07391810.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS183]
 gi|307302098|ref|ZP_07581856.1| riboflavin biosynthesis protein RibD [Shewanella baltica BA175]
 gi|304351600|gb|EFM15999.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS183]
 gi|306914136|gb|EFN44557.1| riboflavin biosynthesis protein RibD [Shewanella baltica BA175]
          Length = 384

 Score =  212 bits (539), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 130/339 (38%), Positives = 194/339 (57%), Gaps = 24/339 (7%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D + MS A++ +R     T  NPSV C+IVKD  ++G G     G PHAEV AL  A
Sbjct: 8   SVLDTQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHALRMA 67

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPCSHYGR+PPCA  +I  G++RVVV V+DP+ +V+GRG+Q L   G
Sbjct: 68  GEHARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVAGRGIQMLRDAG 127

Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I VD  +  +    L+  ++ R       +T+K+A S D    ++   S  ITG  S+  
Sbjct: 128 IEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESRRD 187

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR---LNGLQEH-------SPMRIILDPHFKLSL 232
           V  LR +S A++ GI T+LADDP L  R   L G+++         P+R+ILD   +L L
Sbjct: 188 VQRLRLRSCALVTGIETILADDPSLNVRYQELGGIKDSVTEAQLLQPLRVILDSRARLPL 247

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-------DLKKLLTILVGR 285
            +  +  A+++P+++V+    P     F+ + ++ + C           L +LL+ L G+
Sbjct: 248 SAACL--AIVSPILLVSTVAYPA---EFQAQLLSHVSCLVLPAIAGRVSLPELLSYL-GQ 301

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
               +LVE GA +A +F+   L D ++LY++  ++G  G
Sbjct: 302 SCNHVLVEAGATLAGAFLAEGLADELMLYQAMKILGGQG 340


>gi|114046668|ref|YP_737218.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Shewanella sp. MR-7]
 gi|113888110|gb|ABI42161.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Shewanella sp. MR-7]
          Length = 381

 Score =  212 bits (539), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 141/346 (40%), Positives = 194/346 (56%), Gaps = 32/346 (9%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S  D + MS A++ +R     T  NPSV C+IVKD  ++G G     G PHAEV AL
Sbjct: 1   MNWSELDNQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE ARGATAYVTLEPCSHYGR+PPCA  +I  G++RVVV V+DP+ +V GRG+Q L 
Sbjct: 61  RMAGELARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLR 120

Query: 121 QKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI VD  +  +    L+  ++ R       +T+K+A S D    ++   S  ITG  +
Sbjct: 121 DAGIQVDVGLHRDEAYALNLGFMKRMESGLPWVTVKLAASLDGKTALSNGVSKWITGPEA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR------LNGL----QEHSPMRIILDPHFK 229
           +  V  LR ++ A++ GI TVLADDP L  R      LN L    Q   P+R+ILD   +
Sbjct: 181 RRDVQRLRIRACALVTGIDTVLADDPSLNVRYSELGSLNSLLSEAQILQPLRVILDSRCR 240

Query: 230 LSLDSKIIKTALLA---PVIIV-TENDDPVLALAFRKKNINIIYC------DCR-DLKKL 278
           +      IK ALLA   P+++V TE   P    AF  +  + + C      D R  L  L
Sbjct: 241 MP-----IKAALLAIESPILLVSTEPYSP----AFMAQLPSHVTCLQLPAIDGRISLPTL 291

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           L+ L G+    +L+E GA +A +FI + L D ++LY++  V+G  G
Sbjct: 292 LSYL-GKSCNQVLIEAGATLAGAFIGAGLADELVLYQAMKVLGAQG 336


>gi|126650091|ref|ZP_01722324.1| riboflavin specific deaminase [Bacillus sp. B14905]
 gi|126593263|gb|EAZ87225.1| riboflavin specific deaminase [Bacillus sp. B14905]
          Length = 375

 Score =  212 bits (539), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 118/325 (36%), Positives = 186/325 (57%), Gaps = 7/325 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ D ++M  AL  +    G T+ NP V  +IVK+ I++G G+    G PHAEV A   
Sbjct: 6   MTNKDEKYMQLALDLAASAKGNTNPNPLVGAVIVKNDIIVGTGLHRKAGEPHAEVHAFRM 65

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+ AT YVTLEPCSH+G++PPCA  + E G+ RVVV + DP+  V+GRG+Q L   
Sbjct: 66  AGEHAKNATLYVTLEPCSHFGKTPPCANLVKESGVSRVVVAMQDPNPTVAGRGIQLLRDA 125

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V+  ++E + +     ++   + KR  +  K A++ D  I      S  +TG  ++ 
Sbjct: 126 GIAVEVGVLEQQARRLNERFIHNMLTKRPFVISKFAMTVDGKIATHTGHSKWVTGDAARE 185

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH +R + D ILVG+GTV+AD+P LT RL+     +P RII+D   +  LD+ +  T  
Sbjct: 186 DVHHIRHEVDGILVGVGTVIADNPSLTTRLSEGYGKNPTRIIMDSLLRSPLDANVFNTE- 244

Query: 242 LAPVIIVTENDDPVLAL-AFRKKNINIIYCDCRDL----KKLLTILVGRGVTSLLVEGGA 296
            AP I+V  N+     + +F  K + ++  +  +L     ++L  L   G+T +L+EGG+
Sbjct: 245 EAPTILVCSNEVSQEKVDSFTDKGLTVLPIEKNELGLNIDEMLARLYEHGITDILLEGGS 304

Query: 297 AVAHSFINSRLVDSIILYRSQIVIG 321
            V  SF+    +D  ++Y +  V+G
Sbjct: 305 KVNASFLQQGAIDKYVIYVAPKVLG 329


>gi|229031753|ref|ZP_04187746.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1271]
 gi|228729637|gb|EEL80624.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1271]
          Length = 379

 Score =  212 bits (539), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 120/324 (37%), Positives = 182/324 (56%), Gaps = 4/324 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE+
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +IE  ++RVV+   D +  VSG G + L + GI +
Sbjct: 72  AKGATVYVTLEPCSHFGKTPPCCELLIEKEVKRVVIATLDCNPLVSGNGKKRLEEAGIDV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEATLLNRFFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+    +H P+R+ILD H +    S +IK  L+   
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVILDTHLRTPPSSHVIKDGLVPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           I V ++ +     ++  +N+ I     +  +++ LL  L  + + SL VEGG ++  SF+
Sbjct: 251 IFVGKDVNKEKIASYESENVTIFQMKTKQIEIEDLLFFLGEKQILSLFVEGGQSIHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327
            ++  + II Y S I+IG    P+
Sbjct: 311 QTKHFNEIITYISPILIGGKDAPT 334


>gi|225023912|ref|ZP_03713104.1| hypothetical protein EIKCOROL_00778 [Eikenella corrodens ATCC
           23834]
 gi|224943386|gb|EEG24595.1| hypothetical protein EIKCOROL_00778 [Eikenella corrodens ATCC
           23834]
          Length = 364

 Score =  212 bits (539), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 132/361 (36%), Positives = 194/361 (53%), Gaps = 8/361 (2%)

Query: 1   MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP  S  D   M  A+  +      TS NP V C+I + G ++G+G     G PHAEV A
Sbjct: 1   MPQFSHADHALMQQAIALAWQGRFSTSPNPRVGCVIAQGGQIVGQGFHLKAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           L +AG  A+GATAYVTLEPC+H+GR+PPCA+ +I  G+RRVV  + DP+  V G+GL  L
Sbjct: 61  LRQAGSAAQGATAYVTLEPCAHHGRTPPCAEALIRAGVRRVVAAMQDPNPLVVGKGLAIL 120

Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI V   +ME E +     +L+R    R  + LK A S D    +A   S  ITG  
Sbjct: 121 EAAGIQVACGLMEREARQLNRGFLSRIERGRPFVKLKTAASLDGKTALANGQSQWITGEA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           +++ V + RA+S A+L GIGTVLAD+P LT R +      P+R++LD   +L   S ++ 
Sbjct: 181 ARHDVQIQRAESCAVLTGIGTVLADNPRLTVR-DFPTLRPPLRVLLDSRLRLPAGSHLLD 239

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
            +  AP +I T +D P  A A     +         L  +L  L  RG+  L++E GA +
Sbjct: 240 GS--APTLIYTLSDRPAPAGAAEICRLEADAQGRLSLNAVLADLAARGIGELMLEAGATL 297

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
             +F+   LVD I+ Y++  ++G    P+      L +N   + R+     V +E +G +
Sbjct: 298 GSAFLAQDLVDEIVCYQAPKLLGGAQSPTLFR---LPENPAALSREPDWHTVGIEQLGDD 354

Query: 359 L 359
           +
Sbjct: 355 I 355


>gi|325206734|gb|ADZ02187.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
           M04-240196]
          Length = 369

 Score =  212 bits (539), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 123/327 (37%), Positives = 180/327 (55%), Gaps = 9/327 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +A
Sbjct: 3   SDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+G   L   G
Sbjct: 63  GEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGFAMLEAAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  
Sbjct: 123 IKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V +LRA+S A+L GIGTVLAD+P L  R    L++  P RI+LD   +L LDS ++    
Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296
               I   E ++  L       ++ I+      D + DL  L+ +L   G   ++VE G+
Sbjct: 241 SPTYIATLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +  +F+   L D I+LYRS  ++G G
Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGSG 327


>gi|220934731|ref|YP_002513630.1| riboflavin biosynthesis protein RibD [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219996041|gb|ACL72643.1| riboflavin biosynthesis protein RibD [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 369

 Score =  212 bits (539), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 121/331 (36%), Positives = 186/331 (56%), Gaps = 15/331 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            +  D R M+ AL+ +R  +  T  NP V C++V+DG V+G G     G PHAE+ AL +
Sbjct: 2   TTETDTRHMARALQLARRGLYTTDPNPRVGCVMVRDGQVLGEGFHVRAGEPHAEILALRQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGAT YVTLEPC+H+GR+PPCA  +I  G+ RVV  + DP+ RV+G+GL  L+  
Sbjct: 62  AGEAARGATVYVTLEPCAHFGRTPPCADALIHAGVARVVAAMVDPNPRVAGQGLARLTAA 121

Query: 123 GIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI     ++E+E +     +++R  + R ++ +K+A+S D    MA   S  ITG  ++ 
Sbjct: 122 GITTASGVLEAEARALNPGFISRMEQGRPYVRVKLAMSLDGRTAMASGESRWITGEAARR 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-------HSPMRIILDPHFKLSLDS 234
            V  LRA++ AIL G GTVLAD+P L  RL+  QE         P+R++LD     + ++
Sbjct: 182 DVQRLRARAGAILTGSGTVLADNPGLDVRLSA-QELGIEGPVRQPLRVVLDTRLACTPEA 240

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRK--KNINIIYCDCR--DLKKLLTILVGRGVTSL 290
           K+  T    P +++T   D       +     +  +    R  DL  +L +L  RG+  L
Sbjct: 241 KLFTTG--GPALVLTAEQDTARYTQLQACGAEVEAVASAPRGLDLHAVLELLARRGINEL 298

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            VE G  +  S + + LVD +++Y +  ++G
Sbjct: 299 HVEAGPILCGSLMQAGLVDELVIYMAPHLMG 329


>gi|330812014|ref|YP_004356476.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; riboflavin
           biosynthesis protein RibD [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327380122|gb|AEA71472.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; riboflavin
           biosynthesis protein RibD [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 377

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/339 (37%), Positives = 181/339 (53%), Gaps = 28/339 (8%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            DA +M+ AL  +R     T  NP V C+IV+DG ++G G     G PHAEV AL  AGE
Sbjct: 10  LDAHYMARALELARRGHYTTHPNPRVGCVIVRDGQIVGEGWHIRAGEPHAEVHALRAAGE 69

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGLQ L+Q GI 
Sbjct: 70  QARGATAYVTLEPCSHHGRTPPCADALVNAGVARVVAAMQDPNPEVAGRGLQRLAQAGIA 129

Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
            +  ++E E +     +L R  +    + +K+A+S D    M    S  ITG  +++ V 
Sbjct: 130 TESGVLEGEARKLNEGFLKRMEQGLPFVRVKLAMSLDGRTAMESGESQWITGPAARSAVQ 189

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSLDS 234
            LRAQ+  +L G  TVLAD+  LT R + L              P+R+++D   ++ LD+
Sbjct: 190 RLRAQASVVLTGADTVLADNARLTVRADELGLDAEQTASVMSRPPLRVLVDGRLRVPLDA 249

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC------DCR-DLKKLLTILVGRGV 287
              K     P ++ T        +A  ++  N   C      D + DL +LL  L GRGV
Sbjct: 250 AFFKA---GPALVAT-------CMAVEEQYANGPECMIVAGDDGQVDLHRLLVELAGRGV 299

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
             +LVE G  +A +F    LVD   ++ +   +G    P
Sbjct: 300 NEVLVEAGPRLAGAFARQGLVDEFQIFIAGKFLGSSARP 338


>gi|319427244|gb|ADV55318.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase, RibD [Shewanella putrefaciens 200]
          Length = 384

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 130/336 (38%), Positives = 190/336 (56%), Gaps = 18/336 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D + MS A++ +R     T  NPSV C+IVKD  +IG G     G PHAEV AL  A
Sbjct: 8   SALDIQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIIGEGYHQKAGEPHAEVHALRMA 67

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPCSHYGR+PPCA  +I  G++RVVV V+DP+ +V GRG+Q L   G
Sbjct: 68  GERARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLRDAG 127

Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I VD  +  +    L+  ++ R       +T+K+A S D    ++   S  ITG  S+  
Sbjct: 128 IEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESRRD 187

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSL 232
           V  LR +S A++ GI T+LADDP L  R   L          Q   P+R+ILD   +L L
Sbjct: 188 VQRLRLRSCALVTGIETILADDPSLNVRYQELGSLKDRVTEAQLLQPLRVILDSRARLPL 247

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVT 288
            +  +  A+++P+++V+    P    A    +++ +     +    L +LL+ L G+   
Sbjct: 248 SAACL--AIVSPILLVSTVAYPADFQAQLPSHVSCLLLPAIEGRVSLPELLSYL-GQSCN 304

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            +LVE GA +A +F+   L D ++LY++  ++G  G
Sbjct: 305 HVLVEAGATLAGAFLAEGLADELVLYQAMKILGGHG 340


>gi|296314604|ref|ZP_06864545.1| riboflavin biosynthesis protein RibD [Neisseria polysaccharea ATCC
           43768]
 gi|296838643|gb|EFH22581.1| riboflavin biosynthesis protein RibD [Neisseria polysaccharea ATCC
           43768]
          Length = 369

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 127/327 (38%), Positives = 182/327 (55%), Gaps = 9/327 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +      TS NP V C+I + G V+G+G     G PHAEV AL +A
Sbjct: 3   SETDISMMQNALDLAALGRFSTSPNPRVGCVIAQGGQVVGQGFHIKAGEPHAEVHALRQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G+ A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   G
Sbjct: 63  GKMAKGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I ++  ++ESE K     +L+R   +R  + LK AVS D    ++   S  ITG  ++  
Sbjct: 123 IKMECGLLESEAKELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V +LRA+S A+L GIGTVLAD+P L  R    L++  P RI+LD   +L   S ++    
Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPYSHLVTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296
               I   E D+  L       +I I+      D + DL  L+ +L   G   ++VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +  +F+   L D I+LYRS  ++G G
Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGGG 327


>gi|134299939|ref|YP_001113435.1| riboflavin biosynthesis protein RibD [Desulfotomaculum reducens
           MI-1]
 gi|134052639|gb|ABO50610.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Desulfotomaculum reducens MI-1]
          Length = 376

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 127/329 (38%), Positives = 181/329 (55%), Gaps = 6/329 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL  +    G TS NP V  ++VKDG V+G+G  A  G  HAEV AL +AG+ 
Sbjct: 4   DRHYMNMALELAAKARGRTSPNPMVGAVLVKDGEVVGKGFHAKAGGAHAEVVALADAGDR 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPC H+G++ PC + + + G++RVV  + DP+  V+G+GL  L   GI +
Sbjct: 64  AKGATVYVTLEPCCHHGKTGPCTEALKKAGVKRVVAAMTDPNPLVAGKGLNILKDAGIEV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++E E K     ++     K   I LK A S D  I  A   S  ITG  ++N  H 
Sbjct: 124 VSGLLEEEAKELNEVFIKYITTKIPFIVLKAATSLDGKIATASGESKWITGDTARNYGHR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR   DAILVG+ TVLADDP LT RL   +   P+RII+D   +    +KI+     A  
Sbjct: 184 LRDAYDAILVGVNTVLADDPSLTARLPEGRGKDPLRIIVDSMSRTPTSAKILTQESAAHT 243

Query: 246 IIVTENDDPVLALA-FRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300
           II T    PV   A        +I         DLKKL+ +L  + ++S+L+EGG  ++ 
Sbjct: 244 IIATTQAAPVERRASLMAAGAEVIVVPGEGPGVDLKKLMVLLGEKQISSVLIEGGGKISG 303

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPL 329
           S +N+ +VD +  + +  +IG    P P+
Sbjct: 304 SALNAGIVDKVAWFIAPKIIGGDLAPGPV 332


>gi|212709165|ref|ZP_03317293.1| hypothetical protein PROVALCAL_00198 [Providencia alcalifaciens DSM
           30120]
 gi|212688077|gb|EEB47605.1| hypothetical protein PROVALCAL_00198 [Providencia alcalifaciens DSM
           30120]
          Length = 371

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 129/331 (38%), Positives = 181/331 (54%), Gaps = 15/331 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   ++     TS NP+V C+IV+DG ++G G     G PHAEV AL  AG++
Sbjct: 5   DRIYMARAFELAKEGRFTTSPNPNVGCVIVRDGEIVGEGYHQKAGEPHAEVHALRMAGDK 64

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GATAYVTLEPCSH+GR+PPCA+ +I  GI RVV  + DP+ +V+GRGL  L+Q GI  
Sbjct: 65  AKGATAYVTLEPCSHHGRTPPCAEALINAGISRVVAAMQDPNPQVAGRGLYMLNQAGIET 124

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++  E +     +L R      +I LK+A S D    +A   S  IT   ++  V +
Sbjct: 125 ASNILLEEAEALNRGFLKRMRTAFPYIQLKLAASLDGKTALANGESKWITSPAARKDVQV 184

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
           LRAQ+ AIL    TVLADDP LT R N L E             P+RI+LD H +++ D 
Sbjct: 185 LRAQASAILSTSNTVLADDPALTVRWNELPEDIQAKYPEETLRQPIRIVLDRHNRITPDH 244

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVE 293
           K+  T L     +V    D  +      + + I   D   DL  L+  L  R V S+ VE
Sbjct: 245 KV--TQLEGECWLVRPTPDTAVTWQGDVEQLAIPADDNGIDLVILMMQLAKRNVNSIWVE 302

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            GA +A S +   LVD +I+Y +  ++G+  
Sbjct: 303 AGAKLAGSLLKLGLVDELIVYIAPKLLGDAA 333


>gi|325129557|gb|EGC52381.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
           OX99.30304]
          Length = 369

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 124/327 (37%), Positives = 179/327 (54%), Gaps = 9/327 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +A
Sbjct: 3   SDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   G
Sbjct: 63  GEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLESAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  
Sbjct: 123 IKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V +LRA+S A+L GIGTVLAD+P L  R    L++  P RI+LD   +L LDS ++    
Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296
               I   E ++  L       +I I+          DL  L+ +L   G   ++VE G+
Sbjct: 241 SPTYIATLERNEDRLHPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +  +F+   L D I+LYRS  ++G G
Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGSG 327


>gi|288555991|ref|YP_003427926.1| riboflavin specific deaminase [Bacillus pseudofirmus OF4]
 gi|288547151|gb|ADC51034.1| riboflavin specific deaminase [Bacillus pseudofirmus OF4]
          Length = 360

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 135/327 (41%), Positives = 180/327 (55%), Gaps = 12/327 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AGE+
Sbjct: 3   DIDYMKLALTLAEQTRGQTSPNPMVGSVVVKDGAIVGMGAHLKAGEGHAEVNALKMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GAT YVTLEPCSHYG++PPCA  IIE  ++RVVV   DP+  VSGRG++ L   GI V
Sbjct: 63  AEGATIYVTLEPCSHYGKTPPCADLIIEKQLKRVVVATVDPNPEVSGRGIKRLRDSGITV 122

Query: 127 D-RMMESEG----KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           D  + E+E     ++F H   T    KR  +T+K A + D         S  ITG  ++ 
Sbjct: 123 DVGVCEAEAIELNRMFFHFIQT----KRPFVTMKTASTLDGKTATVTGESKWITGEEARL 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            VH  R   DAILVGIGTVL+D+P LT RL NG +  +P+RIILD H +L   S++    
Sbjct: 179 DVHRDRHIHDAILVGIGTVLSDNPALTTRLPNGGR--NPIRIILDRHLRLPESSQVACDQ 236

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
                +  TE+       A R   +++I      +  +L  L  R V +L VEGG  V  
Sbjct: 237 AAKTWVFTTEHASSEKEEALRMLGVDVIRLRDYSIPSILKELGKRRVMTLYVEGGQEVNG 296

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS 327
           SFI  R V+ +I Y +  +IG    P+
Sbjct: 297 SFIKERAVNQVITYVAPKMIGGKNAPT 323


>gi|301064689|ref|ZP_07205078.1| riboflavin biosynthesis protein RibD [delta proteobacterium NaphS2]
 gi|300441231|gb|EFK05607.1| riboflavin biosynthesis protein RibD [delta proteobacterium NaphS2]
          Length = 369

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 130/361 (36%), Positives = 196/361 (54%), Gaps = 18/361 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  A++ +R  +G TS NP+V  +IVK+G V+  G     G PHAEV+A  + G  
Sbjct: 5   DTHFMKLAVKEARKGLGRTSPNPAVGAVIVKEGRVVASGFHKQAGMPHAEVEAFRKVGNR 64

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GAT YVTLEPC+H+G++PPC + I++ G++RVVV + DP+  V+G G  +L +KG+ +
Sbjct: 65  APGATLYVTLEPCNHHGKTPPCTELILKSGVKRVVVGMRDPNPLVTGGGCDYLEKKGLEV 124

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++E E      A+       R  +  K A++ D     +   S  IT   S++ VH 
Sbjct: 125 VTGILEDECIRLNEAFTKFITTGRPFVIAKSAITLDGWTATSAHHSQWITNEKSRHFVHR 184

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR + DA+L+GIGTVLADDP +T RL   +   P RI++D +F+    +K++K    AP 
Sbjct: 185 LRDRVDAVLMGIGTVLADDPAMTARLGAKKGKDPTRIVVDTNFRTPAGAKVMKHDSTAPT 244

Query: 246 IIVT--ENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           II T  E +          K +  + C    D  DL  L+  L    +TS+LVEGG+ + 
Sbjct: 245 IIATSVEGNRSRPDRGKHPKGVETLVCPKQGDKLDLNWLMDKLGEMSITSILVEGGSMIL 304

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF--------MCVRRDYFGSDVC 351
            + I ++L+D   ++ +  ++G GG   P+  G   K            VRR  FG DV 
Sbjct: 305 GAMIRAQLIDKFYVFIAPKILG-GGDGIPMAAGAGPKTMDDSLGLKDTSVRR--FGDDVL 361

Query: 352 L 352
           +
Sbjct: 362 I 362


>gi|260441248|ref|ZP_05795064.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Neisseria gonorrhoeae DGI2]
 gi|268600600|ref|ZP_06134767.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID18]
 gi|291044592|ref|ZP_06570301.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae DGI2]
 gi|268584731|gb|EEZ49407.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID18]
 gi|291011486|gb|EFE03482.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae DGI2]
          Length = 369

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 123/327 (37%), Positives = 183/327 (55%), Gaps = 9/327 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +      TS NP V C+I     ++G+G     G PHAEV AL +A
Sbjct: 3   SDTDISMMENALDLADLGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   G
Sbjct: 63  GEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  ++E++ +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  
Sbjct: 123 IKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V +LRA+S A+L GIGTVLAD+P L  R    L++  P RI+LD   +L  DS+++    
Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPDSRLLTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296
              +I   E ++  L    +  ++ I+          DL +L+ +L G G   ++VE GA
Sbjct: 241 SPTLIATLERNEDRLRPYRKHAHVRILMPSETAGGKIDLHRLMRLLAGEGYGEVMVEAGA 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +  +F+   L D I+LYRS  ++G G
Sbjct: 301 KLTSAFLAENLADEIVLYRSPKILGIG 327


>gi|229098580|ref|ZP_04229521.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-29]
 gi|228684902|gb|EEL38839.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-29]
          Length = 379

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 129/369 (34%), Positives = 195/369 (52%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE+
Sbjct: 12  DQEYMRIALQLAKGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++R+V+   D +  VSG G + L + GI +
Sbjct: 72  AKNATVYVTLEPCSHFGKTPPCCELLIEKGVKRIVIATLDCNPLVSGNGKKKLEEAGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLETEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGAEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+    +HS +R+ILD H +    S +I  AL    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKHS-IRVILDTHLRTPPSSHVITDALAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +     ++  KNI I     +  +++ +L +L  + + SL +EGG  V  SF+
Sbjct: 251 IIVGKDVNKEKIASYESKNIAIFQMKTKQIEIQDVLDLLGEKQILSLFIEGGQTVHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG  G P+        K     +         G D+ +    +N
Sbjct: 311 QTNNFNEIVTYISPKLIGGKGAPTLFGGNGFSKLQDSLSLKIQEMKQIGDDIKIVATARN 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTKCLQEL 379


>gi|290968502|ref|ZP_06560041.1| riboflavin biosynthesis protein RibD [Megasphaera genomosp. type_1
           str. 28L]
 gi|290781498|gb|EFD94087.1| riboflavin biosynthesis protein RibD [Megasphaera genomosp. type_1
           str. 28L]
          Length = 378

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 121/323 (37%), Positives = 180/323 (55%), Gaps = 9/323 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           A +M  AL  ++  +G TS NP V C+IVKDG ++G G     G PHAEV AL+EAG+ A
Sbjct: 4   AEYMKKALALAKIALGYTSPNPVVGCVIVKDGEIVGTGYHHQAGAPHAEVLALQEAGDRA 63

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            GAT YVTLEPC+HYGR+PPCA+ +++  I++VV+ + DP+  V+G+G   L Q GI+V+
Sbjct: 64  TGATVYVTLEPCAHYGRTPPCARTLVQHKIKKVVIAMLDPNPLVAGKGAAILRQAGIVVE 123

Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++ +E       ++   +     I +K+A S D  I      S  IT   S+     L
Sbjct: 124 VGLLSAEAVKLNEVFIKNMLSNIPFIAIKLAQSLDGCIATRTGHSQWITNAWSRQYGQYL 183

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQE---HSPMRIILDPHFKLSLDSKIIKTALLA 243
           R+  D ILVGI T+L D+P LTCR+    +   H P+RI+LD + +  L S+++      
Sbjct: 184 RSIYDGILVGINTILEDNPLLTCRVRREGQAVPHQPIRIVLDTYGRTPLSSQVVNDKTAR 243

Query: 244 PVIIVT-----ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
            +I+ T     E  + +LA              C DL   L +L   G+ S+LVEGG+ +
Sbjct: 244 TIIMTTAQCPQEKKEALLAAGVTVLTAPTANTGCVDLHAALQLLRQEGIGSILVEGGSTI 303

Query: 299 AHSFINSRLVDSIILYRSQIVIG 321
             SF +++LVD I  +    +IG
Sbjct: 304 HGSFFDAKLVDKIYAFLGNSIIG 326


>gi|307265418|ref|ZP_07546974.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919532|gb|EFN49750.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 360

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 124/330 (37%), Positives = 188/330 (56%), Gaps = 15/330 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL  +    G T+ NP V  +IVK+G +IG G   Y G PHAEV AL+ A E+ +G
Sbjct: 4   YMKRALTLAEKGWGYTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVEDVKG 63

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           +T +VTLEPCSHYG++PPC + II+ GI+RV + ++DP+ +VSG G++ L + GI V   
Sbjct: 64  STMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVHVG 123

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           MME + +     ++     K   + LK A+S D  I      S  IT   S+   H +R 
Sbjct: 124 MMEKDARKLNEIFVKYITTKFPFVILKSAMSIDGKIACYNGNSKWITNEKSRKFAHKIRG 183

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           +  AI+VG+ TV+ D+P LT RL G +  +P+RII+D   ++ LDS +I+      +I  
Sbjct: 184 RVSAIMVGVNTVINDNPMLTTRLEGYK--NPVRIIVDSRGRIPLDSNVIRDKTAKTIIAT 241

Query: 249 TENDDPVLALAFRKK------NINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAH 300
           TE    ++    RKK       + I+  D R   LK+L+  L  RG+ S+L+EGG  +  
Sbjct: 242 TE----LMPNNVRKKLEDMDIEVIILKNDNRKVPLKELMIKLGERGIDSVLIEGGGTLNW 297

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           S +  R+VD ++ + S  +IG     +P+E
Sbjct: 298 SALKERIVDKVMFFISPRIIGGKNALTPVE 327


>gi|153954787|ref|YP_001395552.1| hypothetical protein CKL_2169 [Clostridium kluyveri DSM 555]
 gi|219855247|ref|YP_002472369.1| hypothetical protein CKR_1904 [Clostridium kluyveri NBRC 12016]
 gi|146347645|gb|EDK34181.1| RibD [Clostridium kluyveri DSM 555]
 gi|219568971|dbj|BAH06955.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 369

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 126/328 (38%), Positives = 186/328 (56%), Gaps = 8/328 (2%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M   + D  +M  AL  +    G  + NP V  L+VK+G ++GRG   + G PHAEV AL
Sbjct: 1   MNYDNKDEHYMEIALELASKGEGFVNPNPQVGALVVKEGNIVGRGYHKFYGGPHAEVYAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           +EAG++A G   YVTLEPCSHYG++PPC + I+  GI++VVV + DP+  VSGRG+++L 
Sbjct: 61  KEAGDKAAGGQIYVTLEPCSHYGKTPPCVEAIVRAGIKKVVVALKDPNPLVSGRGIEFLR 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
            KGI +V  ++E E       ++    +K   + LK AV+ D  I      S  IT   S
Sbjct: 121 NKGIEVVTGVLEKEALNINEIFIKYISDKLPFVILKSAVTLDGKIATVTGQSKWITCEES 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +N VH +R +  AI VGIGT+L+D+P LT RL   +  SP+ ++LD   ++ LD KI  T
Sbjct: 181 RNFVHHIRNRVMAIAVGIGTILSDNPLLTTRLEK-KCKSPIAVVLDSKLRIPLDCKIFDT 239

Query: 240 ALLAPVIIV-TENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVE 293
                +II  TE  D        K  +++I C   +     LK L+  L   G+ SL +E
Sbjct: 240 LKYRKIIIACTEGYDEDKKYEIEKMGVDVIICPKDESGHVNLKILIEKLGNIGIDSLFIE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG 321
           GG ++  S ++S +VD +I + +  +IG
Sbjct: 300 GGGSLNFSALSSGIVDKVIYFIAPKIIG 327


>gi|229104716|ref|ZP_04235378.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-28]
 gi|228678780|gb|EEL32995.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-28]
          Length = 379

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 130/369 (35%), Positives = 194/369 (52%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE+
Sbjct: 12  DQEYMRIALQLAKGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+ AT YVTLEPCSH+G++PPC + +IE G++R+V+   D +  VSG G + L + GI V
Sbjct: 72  AKNATVYVTLEPCSHFGKTPPCCELLIEKGVKRIVIATLDCNPLVSGNGKKKLEEAGIKV 131

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLETEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+    +HS +R+ILD H +    S II   L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKHS-IRVILDTHLRTPPSSHIITNTLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +     ++  KNI I     +  +++ +L +L  + + SL +EGG  V  SF+
Sbjct: 251 IIVGKDVNKEKIASYESKNIAIFQMKTKQIEIQDVLDLLGEKQILSLFIEGGQTVHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG  G P+        K     +         G D+ +    +N
Sbjct: 311 QTNNFNEIVTYISPKLIGGKGAPTLFGGNGFSKLQDSLSLKIQEMKQIGDDIKIVATARN 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTKCLQEL 379


>gi|163738649|ref|ZP_02146063.1| riboflavin biosynthesis protein RibD [Phaeobacter gallaeciensis
           BS107]
 gi|161387977|gb|EDQ12332.1| riboflavin biosynthesis protein RibD [Phaeobacter gallaeciensis
           BS107]
          Length = 358

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 129/323 (39%), Positives = 182/323 (56%), Gaps = 7/323 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           MS AL   R   G    NP+V C+IV+DG ++GRG T  GG PHAE QAL++AG+ ARGA
Sbjct: 1   MSLALSLGRRGQGNCWPNPAVGCVIVRDGRIVGRGWTQPGGRPHAEPQALQQAGDLARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           T YV+LEPCSH G++PPCAQ +I  G+ RVV  ++D D RVSG G   L   GI V   +
Sbjct: 61  TVYVSLEPCSHTGKTPPCAQALINAGVARVVAAIEDSDPRVSGHGFAMLRDAGIPVTTGV 120

Query: 131 ESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            S+   + HA +  +  + R  +TLK+A S D  I  A   S  ITG  ++  VH +RA+
Sbjct: 121 CSDAAAWDHAGFFLKTEQGRPFVTLKLASSFDGRIATAAGESKWITGSEARRAVHAMRAR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV- 248
            DA++VG GT  ADDP LT R  G+    P+R+++  H  L L  ++ ++A   PV I  
Sbjct: 181 HDAVMVGGGTARADDPSLTVRDLGVARQ-PVRVVISRHLDLPLMGQLARSARDIPVWICH 239

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHSFIN 304
               D     A+      ++ C    L+     +L  L   G+T +  EGG+A+A S + 
Sbjct: 240 GAGADAERLRAWEGLGAVLLPCAADGLQLDAGDVLQQLGQAGLTRVFCEGGSALAASLLA 299

Query: 305 SRLVDSIILYRSQIVIGEGGIPS 327
             LVD +I + + + IG  G+ S
Sbjct: 300 QDLVDELIGFTAGLGIGGDGLSS 322


>gi|229146686|ref|ZP_04275053.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST24]
 gi|228636856|gb|EEK93319.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST24]
          Length = 379

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 122/325 (37%), Positives = 182/325 (56%), Gaps = 6/325 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE+
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC   +++ G++RVV+   D +  VSG G + L + GI +
Sbjct: 72  AKGATVYVTLEPCSHFGKTPPCCDLLLKKGVKRVVIATLDCNPLVSGNGKRRLEEAGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            R   DAILVG+ TV+AD+P LT R+ NG Q  +P+R+ILD H +    S +I   L   
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDGLAPT 249

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHSF 302
            IIV ++ +P    ++  +NI I     + +K   +L +L  + + SL VEGG  V  SF
Sbjct: 250 WIIVGKDVNPEKIASYESENIAIFQIKTKQIKIQDVLHLLGEKQILSLFVEGGQTVHASF 309

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327
           + ++  + I+ Y S  +IG    P+
Sbjct: 310 LQTKHFNEIVTYISPKLIGGSNAPT 334


>gi|187778552|ref|ZP_02995025.1| hypothetical protein CLOSPO_02147 [Clostridium sporogenes ATCC
           15579]
 gi|187772177|gb|EDU35979.1| hypothetical protein CLOSPO_02147 [Clostridium sporogenes ATCC
           15579]
          Length = 364

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 117/320 (36%), Positives = 181/320 (56%), Gaps = 10/320 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL+ ++   G  + NP V  +++KD  +IG G   Y G PHAEV AL EAGE+A+G
Sbjct: 7   YMEKALKLAKKGEGKVNPNPKVGAIVIKDNKIIGEGYHKYFGGPHAEVYALREAGEKAKG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           AT YVTLEPCSHYG++PPCA+ I++ GI + V+ + DP+  V GRG+  L Q GI +V  
Sbjct: 67  ATIYVTLEPCSHYGKTPPCAKAIVKAGIAKAVIAMKDPNSLVQGRGIDILKQNGIEVVTD 126

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +ME E K     ++    +K   + LK A + D  I      S  ITG  S+ +VH +R 
Sbjct: 127 IMEKESKELNEVFIKYITKKEPFVVLKTASTLDGKIATKKGESKWITGEESRYRVHQIRN 186

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
               I+VGIGT++ D+P LT R+   +  SP  II+D + ++ L+SKI++T     + I 
Sbjct: 187 DLSGIMVGIGTIIKDNPLLTTRIE--EGRSPKAIIVDSNLRIPLESKILETINARSIYIA 244

Query: 249 TENDDPVLALAFRKKNINIIYCDCRD-------LKKLLTILVGRGVTSLLVEGGAAVAHS 301
           T      L+     +N+ +   +  +       LKKL+  L    + S+L+EGG+ +  S
Sbjct: 245 TTKKHKDLSKKNDLENLGVKILEFEENEEGKVPLKKLMQYLGEEEIDSILLEGGSTLNFS 304

Query: 302 FINSRLVDSIILYRSQIVIG 321
            +   +VD ++ + +  +IG
Sbjct: 305 ALKEGIVDKVMCFIAPKIIG 324


>gi|78485744|ref|YP_391669.1| riboflavin biosynthesis protein RibD [Thiomicrospira crunogena
           XCL-2]
 gi|78364030|gb|ABB41995.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Thiomicrospira crunogena XCL-2]
          Length = 391

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 125/342 (36%), Positives = 191/342 (55%), Gaps = 21/342 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S FD + M  A+  +R  +  T  NP+V C+I +   +I  G     G PHAE  AL  A
Sbjct: 10  SDFDVQMMQRAIDLARKGLYSTKPNPAVGCVITQQENIIAEGWHQKAGEPHAERVALANA 69

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            E  +GAT YVTLEPCSH+G++PPCA  +++ G+ RVV+ + DP+  V+G G++ L Q G
Sbjct: 70  TESVKGATVYVTLEPCSHHGKTPPCADALVDSGVARVVIAMQDPNPLVAGNGIKRLEQAG 129

Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I+VD  ++  E       +++     R  + LK+A S D    MA   S  ITG  +++Q
Sbjct: 130 IVVDSGILSEEAAALNKGFVSVMTSNRPFVRLKVANSLDGRTAMANGESQWITGPEARHQ 189

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN-------GLQEHS--PMRIILDPHFKLSLD 233
           VHL+RAQ  AI+ G+GTVLADDP L  RL+       GL   +  P+R++LD +    LD
Sbjct: 190 VHLMRAQHGAIVTGVGTVLADDPSLNVRLSESVLTELGLTSENCHPLRVVLDANLSTPLD 249

Query: 234 SKII----KTALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILV-G 284
           +K++    +T L+     V +N D  L   F +K   +I      D  D+  +L+ LV  
Sbjct: 250 AKMLSLPGRTLLMTSKETVDQNLD--LIERFYQKGAEVIAVESDGDKLDIPSVLSYLVES 307

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
             +  ++VE GA VA +FI + +V+ + ++ + I++GE   P
Sbjct: 308 ENIYDVMVEAGAIVAGAFIQADVVNELHVFTAPILMGEMAKP 349


>gi|153001671|ref|YP_001367352.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS185]
 gi|151366289|gb|ABS09289.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS185]
          Length = 384

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 129/336 (38%), Positives = 189/336 (56%), Gaps = 18/336 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D + MS A++ +R     T  NPSV C+IVKD  ++G G     G PHAEV AL  A
Sbjct: 8   SVLDTQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHALRMA 67

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPCSHYGR+PPCA  +I  G++RVVV V+DP+ +V+GRG+Q L   G
Sbjct: 68  GEHARGATAYVTLEPCSHYGRTPPCAFALINIGVKRVVVAVEDPNPQVAGRGIQMLRDAG 127

Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I VD  +  +    L+  ++ R       +T+K+A S D    ++   S  ITG  S+  
Sbjct: 128 IEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESRRD 187

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSL 232
           V  LR +S A++ GI T+LADDP L  R   L          Q   P+R+ILD   +L L
Sbjct: 188 VQRLRLRSCALVTGIETILADDPSLNVRYQELGGIKDCVTEAQLLQPLRVILDSRARLPL 247

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVT 288
            +  +  A+++P+++V+    P    A    +++ +          L +LL+ L G+   
Sbjct: 248 SAACL--AVVSPILLVSTVAYPAKFQAQLPSHVSCLVLPAIAGRVSLPELLSYL-GQSCN 304

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            +LVE GA +A +F+   L D ++LY++  ++G  G
Sbjct: 305 HVLVEAGATLAGAFLAEGLADELVLYQAMKILGGQG 340


>gi|226314399|ref|YP_002774295.1| riboflavin biosynthesis protein RibD [Brevibacillus brevis NBRC
           100599]
 gi|226097349|dbj|BAH45791.1| riboflavin biosynthesis protein RibD [Brevibacillus brevis NBRC
           100599]
          Length = 368

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 139/359 (38%), Positives = 199/359 (55%), Gaps = 15/359 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  AL  +R   G TS NP V  +IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 4   DSKYMDLALELARSARGQTSPNPMVGAVIVKDGTIVGMGAHLRAGEPHAEVHALRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YVTLEPCSHYG++PPCA+ +I   +RRVVV   DP+  V+GRG++ L   G+ V
Sbjct: 64  AQGATVYVTLEPCSHYGKTPPCAEALIAAAVRRVVVATLDPNPLVAGRGMEMLRAAGVEV 123

Query: 127 D-RMMESEGK----IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
              + E E K    +F H   TR    R  +T+K A + D  I      S  ITG  ++ 
Sbjct: 124 AVGVREEEAKALNEVFFHYIQTR----RPFVTVKTASTLDGKIASFTGHSRWITGAEARA 179

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-PMRIILDPHFKLSLDSKIIKTA 240
           +VH LR Q DAILVG+GT+LADDP LT R    +  S P+R+ILD   +  LD+ +++ A
Sbjct: 180 EVHELRRQHDAILVGVGTILADDPLLTARQEEQRFGSQPVRVILDSQLRTPLDAHVVQNA 239

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVA 299
                I  T+            + + +I       ++K+L  L   G+TSLLVEGG  V 
Sbjct: 240 DAKTWIFATDTAPKEKQELLAARGVKVITTAGPIRVEKVLDTLGELGITSLLVEGGQEVN 299

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
            SF+ +R +  ++ + +  +IG    PSP    +  + F  +      ++V +  IGK+
Sbjct: 300 GSFLQARAIQKVVSHIALKLIGGSSAPSP----FGGQGFSTMGEAVQLANVTITPIGKS 354


>gi|325197682|gb|ADY93138.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis G2136]
          Length = 369

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 123/327 (37%), Positives = 180/327 (55%), Gaps = 9/327 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +A
Sbjct: 3   SDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALHQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   G
Sbjct: 63  GEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLESAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  ++E++ +     +L+    +R  + LK AVS D    ++   S  ITG  ++  
Sbjct: 123 IKTECGLLENKARELNRGFLSSIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V +LRA+S A+L GIGTVLAD+P+L  R    L++  P RI+LD   +L LDS ++    
Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPQLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296
               I   E ++  L       +I I+          DL  L+ +L   G   ++VE G+
Sbjct: 241 SPTYIATLERNEDRLHPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +  +F+   L D I+LYRS  ++G G
Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGSG 327


>gi|127512119|ref|YP_001093316.1| riboflavin biosynthesis protein RibD [Shewanella loihica PV-4]
 gi|126637414|gb|ABO23057.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Shewanella loihica PV-4]
          Length = 386

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 206/374 (55%), Gaps = 24/374 (6%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S FD++ M+ A++ +R     TS NP+V C+IV+   ++G G     G PHAEV AL
Sbjct: 5   MAWSKFDSQMMARAIKLARKGQYTTSPNPNVGCVIVQGETLVGEGFHIAAGGPHAEVHAL 64

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AG++A+GATAYVTLEPCSHYGR+PPCA+ +I+  + RVVV V DP+ +VSGRG++ L 
Sbjct: 65  RMAGDKAKGATAYVTLEPCSHYGRTPPCAEALIKAEVSRVVVAVTDPNPQVSGRGIKMLQ 124

Query: 121 QKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI+V+  +  E    L+  ++ R       + +K+A S D    ++   S  ITG  +
Sbjct: 125 DAGILVEVGLHQEEAAALNPGFMKRMRSGLPWVGIKLATSLDGKTALSNGVSKWITGPEA 184

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR---LNGLQEH-------SPMRIILDPHFK 229
           +  V  +RA+ DA++ GI TVLADDP L  R   L  L E         P+R++LD   +
Sbjct: 185 RRDVQRMRARFDAVVTGIETVLADDPSLNVRHLELGSLSEQLTEADIRQPLRVVLDSRAR 244

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGR 285
           L   +K+ +T   +PV++V+    P    +   + ++ +     +    LK LL  L G 
Sbjct: 245 LGAKAKLFETQ--SPVLLVSCQPYPEAVASAWPEQVSQLQLPSDNGQVPLKALLEHL-GS 301

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMC 340
            + S++VE GA +A +F+   L D ++LY++  ++G  G     +P   E   L    +C
Sbjct: 302 QLNSVMVEAGATLAGAFMAQGLADELVLYQAPKILGGHGRNLLALPDYTEMTQLPALKLC 361

Query: 341 VRRDYFGSDVCLEY 354
             R   G+D  L +
Sbjct: 362 DER-AIGADRRLTF 374


>gi|299538422|ref|ZP_07051705.1| riboflavin biosynthesis protein ribD [Lysinibacillus fusiformis
           ZC1]
 gi|298726009|gb|EFI66601.1| riboflavin biosynthesis protein ribD [Lysinibacillus fusiformis
           ZC1]
          Length = 370

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 123/360 (34%), Positives = 195/360 (54%), Gaps = 18/360 (5%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D ++M  AL  +    G T+ NP V  +IVK+G+++G G+    G PHAEV A   AG
Sbjct: 3   NVDEKYMQLALDLAASAKGNTNPNPLVGAVIVKNGVIVGTGLHRKAGEPHAEVHAFRMAG 62

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E A GAT YVTLEPCSHYG++PPCA  + E G+ RVVV + DP+  V+GRG+Q L   GI
Sbjct: 63  EHAMGATLYVTLEPCSHYGKTPPCANLVKESGVSRVVVAMQDPNPAVAGRGIQLLQDAGI 122

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
           +V+  ++E + +     ++   +  R  +  K A++ D  I      S  +TG  ++  V
Sbjct: 123 VVEVGVLEQQARRLNERFIHNMLTHRPFVISKFAMTLDGKIATHTGHSKWVTGEAAREDV 182

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H +R + D ILVG+GTV+AD+P LT RL      +P RII+D   +   ++ ++ T   A
Sbjct: 183 HNIRHEIDGILVGVGTVIADNPSLTTRLKQGYGKNPTRIIMDSSLRTPDNANVLNTE-DA 241

Query: 244 PVIIVTENDDPVLALA-FRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAV 298
           P I+V  +D     +  F +K + ++     +    + ++L  L   G+T +L+EGG+ +
Sbjct: 242 PTILVCSDDVSQEKIHLFTEKGVTVLPVQKNEYGLQIDEMLEKLYMHGITDILLEGGSKI 301

Query: 299 AHSFINSRLVDSIILYRSQIVIG--------EGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
             SF+    +D  ++Y +  V+G         G  PS ++E +   N      D  G D+
Sbjct: 302 NASFLQQGAIDKYVVYIAPKVLGGKLSLTPFAGYNPSLMDEAW---NVEFASFDKIGEDL 358


>gi|120598057|ref|YP_962631.1| riboflavin biosynthesis protein RibD [Shewanella sp. W3-18-1]
 gi|120558150|gb|ABM24077.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Shewanella sp. W3-18-1]
          Length = 384

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 130/336 (38%), Positives = 190/336 (56%), Gaps = 18/336 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D + MS A++ +R     T  NPSV C+IVKD  +IG G     G PHAEV AL  A
Sbjct: 8   SALDIQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIIGEGYHQKAGEPHAEVHALRMA 67

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPCSHYGR+PPCA  +I  G++RVVV V+DP+ +V GRG+Q L   G
Sbjct: 68  GERARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLRDAG 127

Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I VD  +  +    L+  ++ R       +T+K+A S D    ++   S  ITG  S+  
Sbjct: 128 IEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESRRD 187

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSL 232
           V  LR +S A++ GI T+LADDP L  R   L          Q   P+R+ILD   +L L
Sbjct: 188 VQRLRLRSCALVTGIETILADDPLLNVRYQELGSLKDRVTEAQLLQPLRVILDSRARLPL 247

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVT 288
            +  +  A+++P+++V+    P    A    +++ +     +    L +LL+ L G+   
Sbjct: 248 SAACL--AIVSPILLVSTVAYPADFQAQLPSHVSCLLLPAIEGRVSLPELLSYL-GQSCN 304

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            +LVE GA +A +F+   L D ++LY++  ++G  G
Sbjct: 305 HVLVEAGATLAGAFLAEGLADELVLYQAMKILGGHG 340


>gi|229157695|ref|ZP_04285770.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus ATCC 4342]
 gi|228625652|gb|EEK82404.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus ATCC 4342]
          Length = 379

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 122/325 (37%), Positives = 184/325 (56%), Gaps = 6/325 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE+
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YVTLEPCSH+G++PPC   +++ G++RVV+   D +  VSG G + L + GI V
Sbjct: 72  AKGATLYVTLEPCSHFGKTPPCCDLLLKKGVKRVVIATLDCNPLVSGNGKRRLEEAGIEV 131

Query: 127 DRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
             ++     + L+ Y    ++ KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTVVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEDARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            R   DAILVG+ TV+AD+P LT R+ NG Q  +P+R+ILD H +    S +I   L   
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDGLAPT 249

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            IIV ++ +P    ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF
Sbjct: 250 WIIVGKDVNPEKIASYESENITIFQIKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 309

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327
           + ++  + I+ Y S  +IG    P+
Sbjct: 310 LQTKHFNEIVTYISPKLIGGSNAPT 334


>gi|228987304|ref|ZP_04147425.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228772533|gb|EEM20978.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 379

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 121/325 (37%), Positives = 183/325 (56%), Gaps = 6/325 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE+
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC   +++ G++RVV+   D +  VSG G + L + GI +
Sbjct: 72  AKGATVYVTLEPCSHFGKTPPCCDLLLKKGVKRVVIATLDCNPLVSGNGKRRLEEAGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            R   DAILVG+ TV+AD+P LT R+ NG Q  +P+R+ILD H +    S +I   L   
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDGLAPT 249

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            IIV ++ +P    ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF
Sbjct: 250 WIIVGKDVNPEKIASYESENIAIFQIKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 309

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327
           + ++  + I+ Y S  +IG    P+
Sbjct: 310 LQTKHFNEIVTYISPKLIGGSNAPT 334


>gi|261417867|ref|YP_003251549.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y412MC61]
 gi|319767321|ref|YP_004132822.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y412MC52]
 gi|261374324|gb|ACX77067.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y412MC61]
 gi|317112187|gb|ADU94679.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y412MC52]
          Length = 380

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 133/326 (40%), Positives = 187/326 (57%), Gaps = 5/326 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  ++  VG TS NP+V  ++V  G V+G G     G PHAEV A+  AGE+
Sbjct: 4   DEHYMRLALDVAKAGVGQTSPNPAVGAVVVNGGTVVGLGAHLKAGEPHAEVYAIRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGAT YVTLEPCSHYG++PPCA  +I+ G+RRVVV   DP+  V+G+G+  L Q GI V
Sbjct: 64  ARGATVYVTLEPCSHYGKTPPCADLLIQAGVRRVVVATTDPNPLVAGKGIAKLRQAGIDV 123

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  +++ E       +      K   +TLK A S D  I  A   S  IT   ++  VH 
Sbjct: 124 DVGVLKDEADELNRMFFHYIAAKTPFVTLKFACSLDGKIATATGESKWITSSAAREDVHR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ DAILVG+ TVL D+P+LT R  G +  +P+RIILD   +  LD+ ++     A  
Sbjct: 184 LRAQHDAILVGVNTVLTDNPKLTVRF-GEKRKNPLRIILDTKLRTPLDAHVVADK-EAET 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            I+T       A A+ +  + +        D++ +L +L  +GV SL VEGG+ V  SF+
Sbjct: 242 WIITGGVSREQAAAYERLGVRVFSMPTAQTDVRDVLRLLGEQGVMSLFVEGGSRVHDSFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPL 329
            +  V+ +I Y +  +IG  G P+P+
Sbjct: 302 RAGAVNEVIAYIAPKLIGGRGAPTPV 327


>gi|240114937|ref|ZP_04728999.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Neisseria gonorrhoeae PID18]
          Length = 361

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 118/306 (38%), Positives = 177/306 (57%), Gaps = 9/306 (2%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGR 84
           TS NP V C+I     ++G+G     G PHAEV AL +AGE A+GATA+VTLEPCSHYGR
Sbjct: 16  TSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQAGEMAKGATAFVTLEPCSHYGR 75

Query: 85  SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLT 143
           +PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   GI  +  ++E++ +     +L+
Sbjct: 76  TPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAGIKTECGLLENKARELNRGFLS 135

Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203
           R   +R  + LK AVS D    ++   S  ITG  ++  V +LRA+S A+L GIGTVLAD
Sbjct: 136 RIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVLRAESCAVLTGIGTVLAD 195

Query: 204 DPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
           +P L  R    L++  P RI+LD   +L  DS+++       +I   E ++  L    + 
Sbjct: 196 NPRLNVRAFPTLRQ--PARIVLDSRLRLPPDSRLLTDGQSPTLIATLERNEDRLRPYRKH 253

Query: 263 KNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
            ++ I+          DL +L+ +L G G   ++VE GA +  +F+   L D I+LYRS 
Sbjct: 254 AHVRILMPSETAGGKIDLHRLMRLLAGEGYGEVMVEAGAKLTSAFLAENLADEIVLYRSP 313

Query: 318 IVIGEG 323
            ++G G
Sbjct: 314 KILGIG 319


>gi|47568170|ref|ZP_00238874.1| riboflavin biosynthesis protein RibD [Bacillus cereus G9241]
 gi|47555160|gb|EAL13507.1| riboflavin biosynthesis protein RibD [Bacillus cereus G9241]
          Length = 370

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 121/325 (37%), Positives = 183/325 (56%), Gaps = 6/325 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE+
Sbjct: 3   DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC   +++ G++RVV+   D +  VSG G + L + GI +
Sbjct: 63  AKGATVYVTLEPCSHFGKTPPCCDLLLKKGVKRVVIATLDCNPLVSGNGKRRLEEAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            R   DAILVG+ TV+AD+P LT R+ NG Q  +P+R+ILD H +    S +I   L   
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDGLAPT 240

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            IIV ++ +P    ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF
Sbjct: 241 WIIVGKDVNPEKIASYESENIAIFQIKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 300

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327
           + ++  + I+ Y S  +IG    P+
Sbjct: 301 LQTKHFNEIVTYISPKLIGGSNAPT 325


>gi|229075817|ref|ZP_04208794.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock4-18]
 gi|228707369|gb|EEL59565.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock4-18]
          Length = 379

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 194/369 (52%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE+
Sbjct: 12  DQEYMRIALQLAKGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++R+V+   D +  VSG G + L + GI +
Sbjct: 72  AKNATVYVTLEPCSHFGKTPPCCELLIEKGVKRIVIATLDCNPLVSGNGKKKLEEAGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLETEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGAEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+    +HS +R+ILD H +    S +I   L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKHS-IRVILDTHLRTPPSSHVITDTLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +     ++  KNI I     +  +++ +L +L  + + SL +EGG  V  SF+
Sbjct: 251 IIVGKDVNKEKIASYESKNIAIFQMKTKQIEIQDVLDLLGEKQILSLFIEGGQTVHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG  G P+        K     +         G D+ +    +N
Sbjct: 311 QTNNFNEIVTYISPKLIGGKGAPTLFGGNGFSKLQDSLSLKIQEMKQIGDDIKIVATARN 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTKCLQEL 379


>gi|146293872|ref|YP_001184296.1| riboflavin biosynthesis protein RibD [Shewanella putrefaciens
           CN-32]
 gi|145565562|gb|ABP76497.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Shewanella putrefaciens CN-32]
          Length = 384

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 130/336 (38%), Positives = 188/336 (55%), Gaps = 18/336 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D + MS A++ +R     T  NPSV C+IVKD  +IG G     G PHAEV AL  A
Sbjct: 8   SALDIQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIIGEGYHQKAGEPHAEVHALRMA 67

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPCSHYGR+PPCA  +I  G++RVVV V+DP+ +V GRG+Q L   G
Sbjct: 68  GERARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLRDAG 127

Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I VD  +  +    L+  ++ R       +T+K+A S D    ++   S  ITG  S+  
Sbjct: 128 IEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESRRD 187

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSL 232
           V  LR +S A++ GI T+LADDP L  R   L          Q   P+R+ILD   +L L
Sbjct: 188 VQRLRLRSCALVTGIETILADDPSLNVRYQELGSLKDRVTEAQLLQPLRVILDSRARLPL 247

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVT 288
               +  A+++P+++V+    P    A    +++ +          L +LL+ L G+   
Sbjct: 248 SVACL--AIVSPILLVSTVAYPAEFQAQLPSHVSCLLLPAIAGRVSLPELLSYL-GQSCN 304

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            +LVE GA +A +F+   L D ++LY++  ++G  G
Sbjct: 305 HVLVEAGATLAGAFLAEGLADELVLYQAMKILGGHG 340


>gi|297529535|ref|YP_003670810.1| riboflavin biosynthesis protein RibD [Geobacillus sp. C56-T3]
 gi|297252787|gb|ADI26233.1| riboflavin biosynthesis protein RibD [Geobacillus sp. C56-T3]
          Length = 380

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 133/326 (40%), Positives = 187/326 (57%), Gaps = 5/326 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  ++  VG TS NP+V  ++V  G V+G G     G PHAEV A+  AGE+
Sbjct: 4   DEHYMRLALDVAKAGVGQTSPNPAVGAVVVNGGTVVGLGAHLKAGEPHAEVYAIRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGAT YVTLEPCSHYG++PPCA  +I+ G+RRVVV   DP+  V+G+G+  L Q GI V
Sbjct: 64  ARGATVYVTLEPCSHYGKTPPCADLLIQAGVRRVVVATTDPNPLVAGKGIAKLRQAGIDV 123

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  +++ E       +      K   +TLK A S D  I  A   S  IT   ++  VH 
Sbjct: 124 DVGVLKDEADELNRMFFHYIAAKTPFVTLKFACSLDGKIATATGESKWITSSAAREDVHR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ DAILVG+ TVL D+P+LT R  G +  +P+RIILD   +  LD+ ++     A  
Sbjct: 184 LRAQHDAILVGVNTVLTDNPKLTVRF-GEKRKNPLRIILDTKLRTPLDAHVVADK-EAET 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            I+T       A A+ +  + +        D++ +L +L  +GV SL VEGG+ V  SF+
Sbjct: 242 WIITGGVSREQAAAYERLGVRVFSMPTAQIDVRDVLRLLGEQGVMSLFVEGGSRVHDSFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPL 329
            +  V+ +I Y +  +IG  G P+P+
Sbjct: 302 RAGAVNEVIAYIAPKLIGGRGAPTPV 327


>gi|261393155|emb|CAX50767.1| riboflavin biosynthesis protein RibD [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (riboflavin-specific deaminase) and
           5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
           reductase)] [Neisseria meningitidis 8013]
          Length = 369

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 123/327 (37%), Positives = 179/327 (54%), Gaps = 9/327 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL+ +      TS NP V C+I     ++G+G     G PHAEV AL +A
Sbjct: 3   SETDISMMQNALKLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   G
Sbjct: 63  GEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  
Sbjct: 123 IKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V +LRA+S A+L GIGTVLAD+P L  R    L++  P RI+LD   +L LDS ++    
Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296
               I   E ++  L       +I I+          DL  L+ +L   G   ++VE G+
Sbjct: 241 SPTYIATLERNEDRLHPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +  +F+   L D I+LYRS  ++G G
Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGSG 327


>gi|253581821|ref|ZP_04859045.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium varium ATCC 27725]
 gi|251836170|gb|EES64707.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium varium ATCC 27725]
          Length = 358

 Score =  209 bits (533), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 127/362 (35%), Positives = 207/362 (57%), Gaps = 21/362 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M  AL  +    G  + NP V  ++VKDG ++G G     G PHAEV ALEEAGE+
Sbjct: 2   DKKYMERALELAALGEGYVNPNPMVGAVVVKDGKIVGEGYHKKYGGPHAEVFALEEAGEK 61

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GAT YVTLEPCSHYG++PPCA+ II+ GI+R ++   DP+  VSGRG++ ++  GI +
Sbjct: 62  AEGATIYVTLEPCSHYGKTPPCAKKIIDMGIKRCIIASLDPNPLVSGRGIKMMTDAGIEV 121

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  +ME E       ++     K  ++ LK  ++ D  I      S  IT  +++ +V  
Sbjct: 122 VTGIMEKEALELNRVFMKYISTKVPYLFLKCGITLDGKIASRTGNSKWITNELAREKVQK 181

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
           LR +   I+VGI TVLADDP LT R+ NG    +P R+++DP   + +DSK +       
Sbjct: 182 LRNKYMGIMVGINTVLADDPSLTARIENG---RNPYRVVIDPFLDIPIDSKFVNFEDGKS 238

Query: 245 VIIVTENDDPVLALAF-RKKNINIIYCDCRDLKKLLTIL--VGR-GVTSLLVEGGAAVAH 300
           ++I + N+     ++F +KKN+N+I+ +  D  KL  IL  +G  G+  +L+EGG+ +  
Sbjct: 239 ILITSYNNVEKERISFLKKKNVNVIFLEGIDF-KLYDILKKIGEIGIDGVLLEGGSFLIS 297

Query: 301 SFINSRLVDSIILYRSQIVIGEG-GIP-------SPLEEGYLEKNFMCVRRDYFGSDVCL 352
              +  ++D   ++ +  ++G+   IP         + +G+  +N   V+ + +G++V +
Sbjct: 298 KAFSEDVIDGGEIFIAPKILGDDKAIPFIKGFNFENISDGFQLRN---VKINNYGNNVSM 354

Query: 353 EY 354
           E+
Sbjct: 355 EF 356


>gi|285019600|ref|YP_003377311.1| riboflavin biosynthesis RibD oxidoreductase [Xanthomonas
           albilineans GPE PC73]
 gi|283474818|emb|CBA17317.1| probable riboflavin biosynthesis ribd oxidoreductase protein
           [Xanthomonas albilineans]
          Length = 369

 Score =  209 bits (533), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 123/325 (37%), Positives = 178/325 (54%), Gaps = 4/325 (1%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D R+M+ ALR +      T  NP V C+IV+D   +G G     G PHAEV AL  A
Sbjct: 5   SAADHRWMAQALRLAERGAYTTRPNPMVGCVIVRDDEQVGEGFHQRAGGPHAEVFALRAA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPC+HYGR+PPCA  +IE G+ RVVV + DP  +V+G G   L + G
Sbjct: 65  GEYARGATAYVTLEPCAHYGRTPPCALALIEAGVARVVVAMADPFPQVNGGGFALLREAG 124

Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   +ME + +     +L+R    R  + +K+  S D    +A   S  ITG  ++  
Sbjct: 125 IAVQSGLMEEQARALNRGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITGAAARQD 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTAL 241
           V   RA++ AIL G GTVLADDP LT RL    E   P+R++LD   +    SK+   A 
Sbjct: 185 VQRWRARAGAILSGAGTVLADDPVLTVRLGEATEVLPPLRVVLDAQLRTLARSKVRDGA- 243

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            AP + +         L   +     ++    DL  +L +L  RG+  + VE GA +  +
Sbjct: 244 -APTLYLHAPASVPPTLPNAEFAAVALHEGRLDLDAVLRLLAARGINEVQVEAGATLGGA 302

Query: 302 FINSRLVDSIILYRSQIVIGEGGIP 326
            + + +VD +++Y + +++G+   P
Sbjct: 303 LLRAGMVDEVLVYLAPVLLGDAARP 327


>gi|126175361|ref|YP_001051510.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS155]
 gi|125998566|gb|ABN62641.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Shewanella baltica OS155]
          Length = 384

 Score =  209 bits (533), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 128/336 (38%), Positives = 191/336 (56%), Gaps = 18/336 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D + MS A++ +R     T  NPSV C+IVKD  ++G G     G PHAEV AL  A
Sbjct: 8   SVLDTQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHALRMA 67

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPCSHYGR+PPCA  +I  G++RVVV V+DP+ +V+GRG+Q L   G
Sbjct: 68  GEHARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVAGRGIQMLRDAG 127

Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I VD  +  +    L+  ++ R       +T+K+A S D    ++   S  ITG  S+  
Sbjct: 128 IEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESRRD 187

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR---LNGLQEH-------SPMRIILDPHFKLSL 232
           V  LR +S A++ GI T+L DDP L  R   L G+++         P+R+ILD   +L L
Sbjct: 188 VQRLRLRSCALVTGIETILVDDPSLNVRYQELGGIKDSVTEAQLLQPLRVILDSRARLPL 247

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVT 288
            +  +  A+++P+++V+    P    A    +++ +          L +LL+ L G+   
Sbjct: 248 SAACL--AVVSPILLVSTVAYPAKFQAQLPSHVSCLVLPAIAGRVSLPELLSYL-GQSCN 304

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            +LVE GA +A +F+   L D ++LY++  ++G  G
Sbjct: 305 HVLVEAGATLAGAFLAQGLADELVLYQAMKILGGQG 340


>gi|89093485|ref|ZP_01166433.1| riboflavin biosynthesis protein RibD [Oceanospirillum sp. MED92]
 gi|89082175|gb|EAR61399.1| riboflavin biosynthesis protein RibD [Oceanospirillum sp. MED92]
          Length = 379

 Score =  209 bits (533), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 121/335 (36%), Positives = 188/335 (56%), Gaps = 16/335 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D R+M+ A+  ++  +  T+ NP V C++VKD +++G G     G  HAEV A+ +AG+ 
Sbjct: 9   DHRYMARAIVLAKQGLYTTNPNPRVGCVLVKDEVIVGEGFHFRAGEGHAEVNAMAQAGDL 68

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RVV  + DP+ +V+GRG+Q L   GI  
Sbjct: 69  AKGATAYVTLEPCSHYGRTPPCAEGLIKAGVNRVVCAMVDPNPQVAGRGIQMLESAGISA 128

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  ++E+E +     ++ R       ++LKIA S D    MA   S  ITG  +++ V  
Sbjct: 129 ESGLLEAEARALNPGFIKRMETGLPFVSLKIATSLDGRTAMASGESKWITGAAARSDVQK 188

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQ--------EHSPMRIILDPHFKLSLDSKII 237
           LRA+S AIL G+ ++L D+  LT R   L         +  P+R++LD + +  +D+ I+
Sbjct: 189 LRARSSAILTGVESILTDNSALTVRAEQLGLAQAEEIVKQQPLRVVLDSNLRTPIDASIL 248

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVG-RGVTSLLV 292
                   +I T + D V+    +     +I         DL  LL  L G      LLV
Sbjct: 249 SQP--GRTLIATISKDAVVIEKLQAAGAEVIQMPANQGRVDLVALLKHLAGEEQCNELLV 306

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           E GA +A +FI+++LVD + LY +  ++G    P+
Sbjct: 307 ETGATLAGAFIDAKLVDQLHLYMAMTLMGSSARPA 341


>gi|325127564|gb|EGC50487.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis N1568]
          Length = 369

 Score =  209 bits (533), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 122/327 (37%), Positives = 180/327 (55%), Gaps = 9/327 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +A
Sbjct: 3   SDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   G
Sbjct: 63  GEMAQGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  
Sbjct: 123 IKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V +LRA+S A+L GIGTVLAD+P L  R    L++  P RI+LD   +L  +S ++    
Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPNSHLVTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296
               I   E ++  L       ++ I+      D + DL  L+ +L   G   ++VE G+
Sbjct: 241 SPTYIATLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +  +F+   L D I+LYRS  ++G G
Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGSG 327


>gi|15677653|ref|NP_274814.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis MC58]
 gi|7227070|gb|AAF42152.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis MC58]
 gi|325139638|gb|EGC62177.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis CU385]
          Length = 369

 Score =  209 bits (533), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 122/327 (37%), Positives = 180/327 (55%), Gaps = 9/327 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +A
Sbjct: 3   SDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   G
Sbjct: 63  GEMAQGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  
Sbjct: 123 IKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V +LRA+S A+L GIGTVLAD+P L  R    L++  P RI+LD   +L  +S ++    
Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPNSHLVTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296
               I   E ++  L       ++ I+      D + DL  L+ +L   G   ++VE G+
Sbjct: 241 SPTYIATLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +  +F+   L D I+LYRS  ++G G
Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGSG 327


>gi|56420832|ref|YP_148150.1| riboflavin-specific deaminase [Geobacillus kaustophilus HTA426]
 gi|56380674|dbj|BAD76582.1| riboflavin-specific deaminase
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
           5-amino-6-(5-phosphoribosylamino)uracil reductase )
           [Geobacillus kaustophilus HTA426]
          Length = 380

 Score =  209 bits (533), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 133/326 (40%), Positives = 187/326 (57%), Gaps = 5/326 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  ++  VG TS NP+V  ++V  G V+G G     G PHAEV A+  AGE+
Sbjct: 4   DEHYMRLALDVAKAGVGQTSPNPAVGAVVVNGGTVVGLGGHLKAGEPHAEVYAIRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGAT YVTLEPCSHYG++PPCA  +I+ G+RRVVV   DP+  V+G+G+  L Q GI V
Sbjct: 64  ARGATVYVTLEPCSHYGKTPPCADLLIQAGVRRVVVATTDPNPLVAGKGIAKLRQAGIDV 123

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  +++ E       +      K   +TLK A S D  I  A   S  IT   ++  VH 
Sbjct: 124 DVGVLKDEADELNRMFFHYIAAKTPFVTLKFACSLDGKIATATGESKWITSSAAREDVHR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ DAILVG+ TVL D+P+LT R  G +  +P+RIILD   +  LD+ ++     A  
Sbjct: 184 LRAQHDAILVGVNTVLTDNPKLTVRF-GEKRKNPLRIILDTKLRTPLDAHVVADK-EAET 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            I+T       A A+ +  + +        D++ +L +L  +GV SL VEGG+ V  SF+
Sbjct: 242 WIITGGVSREQAAAYERLGVRVFSMPTAQIDVRDVLRLLGEQGVMSLFVEGGSRVHDSFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPL 329
            +  V+ +I Y +  +IG  G P+P+
Sbjct: 302 RAGAVNEVIAYIAPKLIGGRGAPTPV 327


>gi|160876409|ref|YP_001555725.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS195]
 gi|160861931|gb|ABX50465.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS195]
 gi|315268599|gb|ADT95452.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS678]
          Length = 384

 Score =  209 bits (533), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 129/336 (38%), Positives = 190/336 (56%), Gaps = 18/336 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D + MS A++ +R     T  NP V C+IVKD  ++G G     G PHAEV AL  A
Sbjct: 8   SVLDTQMMSRAIQLARKGFYTTRPNPCVGCVIVKDNQIVGEGYHQKAGEPHAEVHALRMA 67

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPCSHYGR+PPCA  +I  G++RVVV V+DP+ +V GRG+Q L   G
Sbjct: 68  GEHARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLRDAG 127

Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I VD  +  +    L+  ++ R       +T+K+A S D    ++   S  ITG  S+  
Sbjct: 128 IEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESRRD 187

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR---LNGLQEH-------SPMRIILDPHFKLSL 232
           V  LR +S A++ GI T+LADDP L  R   L GL++         P+R+ILD   +L L
Sbjct: 188 VQRLRLRSCALVTGIETILADDPSLNVRYQELGGLKDSVTEAQLLQPLRVILDSRARLPL 247

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVT 288
            +  +  A+++P+++V+    P    A    +++ +          L +LL+ L G+   
Sbjct: 248 SAACL--AIVSPILLVSTVAYPAEFQAQLPSHVSCLVLPAIAGRVSLPELLSYL-GQSCN 304

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            +LVE GA +A +F+   L D ++LY++  ++G  G
Sbjct: 305 HVLVEAGATLAGAFLAEGLADELVLYQAMKILGGQG 340


>gi|168181552|ref|ZP_02616216.1| riboflavin biosynthesis protein RibD [Clostridium botulinum Bf]
 gi|237796324|ref|YP_002863876.1| riboflavin biosynthesis protein RibD [Clostridium botulinum Ba4
           str. 657]
 gi|182674971|gb|EDT86932.1| riboflavin biosynthesis protein RibD [Clostridium botulinum Bf]
 gi|229264059|gb|ACQ55092.1| riboflavin biosynthesis protein RibD [Clostridium botulinum Ba4
           str. 657]
          Length = 365

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 126/361 (34%), Positives = 198/361 (54%), Gaps = 23/361 (6%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M   L+ +    G  + NP V  ++VK+  +IG G   Y G PHAEV AL EAGE+A+G
Sbjct: 7   YMEKTLKLAERGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGPHAEVYALREAGEKAKG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           AT YVTLEPCSHYG++PPCA++I++ GI + ++ + DP+  V GRG+  L Q GI +V  
Sbjct: 67  ATIYVTLEPCSHYGKTPPCAEYIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVTE 126

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +ME E K     ++    +K+  + LK A + D  I      S  ITG  ++++V  +R 
Sbjct: 127 IMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATRTGESKWITGEEARHKVQQIRN 186

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
               I+VGI TV+ DDP LT R+ G +  SP  II+D + ++ L+SKI++T     + I 
Sbjct: 187 DLSGIMVGIDTVIKDDPLLTTRIEGGR--SPKAIIVDSNLRIPLESKILETLSKRAIYIA 244

Query: 249 T--ENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAHS 301
           T  ++ +P    A       ++  +        L KL+  L   GV S+L+EGG+ +  S
Sbjct: 245 TTKKHKNPSKKNALENLGAKVLEFEENQEGKVPLNKLMEYLGTEGVDSILLEGGSTLNFS 304

Query: 302 FINSRLVDSIILY---------RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +   +VD I+ +          S+ +IG  GI S L++ +   N   ++ +  G D+ +
Sbjct: 305 ALKEGIVDKIMCFIAPKIMGGQDSKTMIGGTGIES-LKDIF---NLQNLKFEKIGQDILI 360

Query: 353 E 353
           E
Sbjct: 361 E 361


>gi|259416594|ref|ZP_05740514.1| riboflavin biosynthesis protein RibD [Silicibacter sp. TrichCH4B]
 gi|259348033|gb|EEW59810.1| riboflavin biosynthesis protein RibD [Silicibacter sp. TrichCH4B]
          Length = 366

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 140/362 (38%), Positives = 200/362 (55%), Gaps = 11/362 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S  D RFM  AL   R   G T  NP+V C+IVK G V+GRG T  GG PHAE  AL +
Sbjct: 1   MSKSDHRFMGLALSLGRRGQGRTWPNPAVGCVIVKQGRVVGRGWTQPGGRPHAEPMALAQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  A GATAYV+LEPCSH+G++PPCAQ +I+ GI RVV  ++D D RVSG+G + L   
Sbjct: 61  AGAAAHGATAYVSLEPCSHHGKTPPCAQALIDAGIARVVAAIEDSDPRVSGQGFEMLRAA 120

Query: 123 GIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V   + +E   F H  +  R  + R  +TLK+A S D  I      S  ITG  ++ 
Sbjct: 121 GIKVTTGIRTEEAGFDHEGFFLRTEQGRPFVTLKLASSFDGRIATGSGQSQWITGPEARR 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH +RA+ DA++VG GT  ADDP LT R  G+ +H P R+++  H  L L S++ ++A 
Sbjct: 181 MVHAMRARHDAVMVGAGTARADDPSLTVRDLGI-DHQPARVVVSRHLDLPLMSQLARSAK 239

Query: 242 LAPVIIV-TENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGA 296
             P+ +      D     A+      ++ C+      D   +L  L   G+T +  EGG 
Sbjct: 240 DIPLYLCHGTGADTERLRAWEGLGAQLLSCNALGTQLDPHDVLEQLGSAGLTRVFCEGGG 299

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS--PLEEGYLEK--NFMCVRRDYFGSDVCL 352
           A+A + +   LVD +I + + + IG  G+PS   L  G+L++   F  +     G+D+  
Sbjct: 300 ALAATLLAHDLVDELIGFSAGLAIGAEGLPSIGALGIGHLKEAPRFELIETRPVGADILH 359

Query: 353 EY 354
            +
Sbjct: 360 RW 361


>gi|229117606|ref|ZP_04246978.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock1-3]
 gi|228665926|gb|EEL21396.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock1-3]
          Length = 379

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 194/369 (52%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE+
Sbjct: 12  DQEYMRIALQLAKGTSGQTSPNPMVGAVVVKDGNIVGMGAHLCAGEEHAEVHALHMAGEK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++R+V+   D +  VSG G + L + GI +
Sbjct: 72  AKNATVYVTLEPCSHFGKTPPCCELLIEKGVKRIVIATLDCNPLVSGNGKKKLEEAGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLETEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGAEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+    +HS +R+ILD H +    S +I   L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKHS-IRVILDTHLRTPPSSHVITDTLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +     ++  KNI I     +  +++ +L +L  + + SL +EGG  V  SF+
Sbjct: 251 IIVGKDVNKEKIASYESKNIAIFQMKTKQIEIQDVLDLLGEKQILSLFIEGGQTVHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG  G P+        K     +         G D+ +    +N
Sbjct: 311 QTNNFNEIVTYISPKLIGGKGAPTLFGGNGFSKLQDSLSLKIQEMKQIGDDIKIVATARN 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTKCLQEL 379


>gi|294010277|ref|YP_003543737.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sphingobium
           japonicum UT26S]
 gi|292673607|dbj|BAI95125.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sphingobium
           japonicum UT26S]
          Length = 317

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 131/315 (41%), Positives = 172/315 (54%), Gaps = 41/315 (13%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+AA+  S+   GL++ NP+V CLIVKDG V+GRG T  GG PHAE QAL+EA + ARGA
Sbjct: 1   MAAAIALSQRGRGLSTPNPNVGCLIVKDGHVVGRGWTQRGGRPHAEAQALDEALDRARGA 60

Query: 71  TAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128
           TAYVTLEPC H   R P CA  +   G+RRVV+ + DPD R  G+G  WL Q G+ VD  
Sbjct: 61  TAYVTLEPCFHLSPRGPRCADRMARAGVRRVVIALRDPDPRTDGQGAAWLRQHGVAVDMG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +M  E    +  ++ RQ   R  +TLK+ +S D  I +A   S  ITG  ++   H+ RA
Sbjct: 121 LMAGEAAAAMRGFVLRQTLGRPAVTLKLGLSLDGRIALADGSSRWITGPEARAHAHMERA 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DAILVG GT+ AD P L  RL GL++ SP R++L                        
Sbjct: 181 RHDAILVGGGTLRADAPRLDVRLLGLEDRSPRRVLL------------------------ 216

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           +  D P             I     D+  L        V  LLVEGGA  A +F+ + LV
Sbjct: 217 SHGDAP--------GGWETIAA-PEDIAALPQ------VDHLLVEGGAQAAAAFLRADLV 261

Query: 309 DSIILYRSQIVIGEG 323
           D ++LYR+ I+IG G
Sbjct: 262 DRLLLYRAPILIGAG 276


>gi|170760325|ref|YP_001788192.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169407314|gb|ACA55725.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 365

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 125/361 (34%), Positives = 198/361 (54%), Gaps = 23/361 (6%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL+ +    G  + NP V  ++VK+  +IG G   Y G PHAEV AL EA E+A+G
Sbjct: 7   YMEKALKLAERGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGPHAEVYALREASEKAKG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           AT Y+TLEPCSHYG++PPCA++I++ GI + ++ + DP+  V GRG+  L Q GI +V  
Sbjct: 67  ATMYITLEPCSHYGKTPPCAEYIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVTE 126

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +ME E K     ++    +K+  + LK A + D  I      S  ITG  ++++V  +R 
Sbjct: 127 IMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATRTGESKWITGEEARHKVQQIRN 186

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
               I+VGI TV+ DDP LT R+ G +  SP  II+D + ++ L+SKI++T     + I 
Sbjct: 187 DLSGIMVGIDTVIKDDPLLTTRIEGGR--SPKAIIVDSNLRIPLESKILETLSKRAIYIA 244

Query: 249 T--ENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAHS 301
           T  ++ +P    A       ++  +        L KL+  L   GV S+L+EGG+ +  S
Sbjct: 245 TTKKHKNPSKKNALENLGAKVLEFEENQEGKVPLNKLMQYLGSEGVDSILLEGGSTLNFS 304

Query: 302 FINSRLVDSIILY---------RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +   +VD I+ +          S+ +IG  GI S L++ +   N   ++ +  G D+ +
Sbjct: 305 ALKEGIVDKIMCFIAPKIMGGQDSKTMIGGTGIES-LKDIF---NLQNLKFEKIGQDILI 360

Query: 353 E 353
           E
Sbjct: 361 E 361


>gi|315186245|gb|EFU20006.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           ;5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Spirochaeta thermophila DSM 6578]
          Length = 362

 Score =  209 bits (532), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 114/306 (37%), Positives = 176/306 (57%), Gaps = 8/306 (2%)

Query: 23  GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
           G TS NP V  ++VKDG V+G G     G PHAEV AL EAG EARGA  YVTLEPC H+
Sbjct: 21  GRTSPNPMVGAVVVKDGRVVGEGFHERAGLPHAEVTALSEAGGEARGAEMYVTLEPCCHW 80

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAY 141
           GR+PPC   I++ G+RRVVV   DP+ +V+G+GL  L++ G+ V+  ++  E +     +
Sbjct: 81  GRTPPCTDAILKAGVRRVVVACRDPNPQVAGKGLSILAEAGVEVEVGVLSREARWLNRGF 140

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
           ++R    R  +  K+A S D  I +    S  ITG  S+ +VH LRA SD ++ GIGTVL
Sbjct: 141 ISRMERGRPWVVAKVAASLDGRIALPDGRSKWITGEASRREVHRLRAGSDVLVTGIGTVL 200

Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
           ADDP  T R+   +   P  ++LD   +L + +++++      V++V    D        
Sbjct: 201 ADDPAFTVRVPVGEGRDPGVVVLDTRGRLPVGARVVREGT---VVMVGPGVDEGWRGEME 257

Query: 262 KKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
           ++ + ++    R    D++ +   L   GV  ++VE GA V  +F+ + +VD ++++ + 
Sbjct: 258 RRGVRVVEMGVRGERVDVEAVCAWLGQEGVNVVMVEAGAGVTGAFLEAGVVDELVVFVAP 317

Query: 318 IVIGEG 323
            V+GEG
Sbjct: 318 RVLGEG 323


>gi|330959948|gb|EGH60208.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 381

 Score =  209 bits (532), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 129/345 (37%), Positives = 186/345 (53%), Gaps = 33/345 (9%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D  +M+ AL  +R  +  T  NP V C+IV+DG ++G G  A  G PHAEV AL +A
Sbjct: 9   AALDVHYMARALELARKGLYSTHPNPRVGCVIVRDGQIVGEGWHARAGEPHAEVHALRQA 68

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPCSH GR+PPCA  +++ G+ RVV  + DP+  VSGRGL  L   G
Sbjct: 69  GELARGATAYVTLEPCSHQGRTPPCADALVDAGLARVVAAMQDPNPEVSGRGLLRLMNAG 128

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++ESE +     +L R    R ++ +K+A+S D    MA   S  ITG  +++ 
Sbjct: 129 IGVQCGVLESEARALNKGFLKRMETGRPYVRVKLAMSLDGRTAMASGESQWITGPEARSA 188

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----------PMRIILDPHFKLSL 232
           V  LRAQS  +L G  TVLAD+  LT R + L  ++          P+R+++D   ++ L
Sbjct: 189 VQRLRAQSSVVLTGADTVLADNARLTVRPDELGLNAEMSALAATSPPLRVLIDGRLRVPL 248

Query: 233 DSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
           D+   +       ++VT           E    +LALA    ++        DL+KL+  
Sbjct: 249 DAPFFQA---GSALVVTCAAASARGRYQEEGHEMLALADSAGHV--------DLRKLMGE 297

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           L  RGV  +LVE G  +A +F    LVD   ++ +   +G    P
Sbjct: 298 LANRGVNEVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARP 342


>gi|261867792|ref|YP_003255714.1| riboflavin biosynthesis protein RibD [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413124|gb|ACX82495.1| riboflavin biosynthesis protein RibD [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 374

 Score =  209 bits (531), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 127/333 (38%), Positives = 189/333 (56%), Gaps = 17/333 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D  FM  AL  ++     T+ NPSV C++VK+G ++G+G     G PHAEV AL EA
Sbjct: 6   SPQDVAFMQLALDLAKQGEFTTTPNPSVGCVLVKNGKIVGKGFHFKAGEPHAEVMALREA 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPCSH+GR+PPCA+ ++E G+ +V+  + DP+ +V+G+GLQ L+  G
Sbjct: 66  GENARGATAYVTLEPCSHFGRTPPCAKGLVEAGVSKVIAAMCDPNPQVAGKGLQILADAG 125

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I     ++E + +     +L R    +  + LK+A+S D    MA   S  ITG  ++  
Sbjct: 126 IQSAVGLLEEKAEQLNKGFLKRMRTGKPFVQLKLAMSIDGKTAMASGESKWITGAQARMD 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLS 231
           V   RA++ A+L    TVLADDP L  R   L         QE+   P+R+ILD   K+ 
Sbjct: 186 VQQYRAKASAMLSTSQTVLADDPSLNVRWAELPNETQARYVQENLRQPVRVILDSTHKVR 245

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI--IYCDCRDLKKLLTILVGRGVTS 289
            D K+  T   APV +  E+D  +       + + +   + + R L+ L+T L  R + +
Sbjct: 246 SDFKVFLTD--APVWLAGEDDFQLTGFPTSTEYLKLDRSHGESR-LQALMTELGKRQINT 302

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
           L VE GA +A + I   LVD +I+Y +  ++G+
Sbjct: 303 LWVEAGATLAGALIAENLVDELIIYMAPKLLGD 335


>gi|196038826|ref|ZP_03106134.1| riboflavin biosynthesis protein RibD [Bacillus cereus NVH0597-99]
 gi|196030549|gb|EDX69148.1| riboflavin biosynthesis protein RibD [Bacillus cereus NVH0597-99]
          Length = 370

 Score =  209 bits (531), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 124/325 (38%), Positives = 180/325 (55%), Gaps = 6/325 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 3   DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC   +I+ GI RVV+   D +  VSG G + L + GI +
Sbjct: 63  AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            R   DAILVG+ TV+AD+P LT R+ NG Q  +P+R+ILD H K    S +I   L   
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLKTPPSSHVITDGLAPT 240

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            IIV  + +     ++  KNI I     +  +++ +L +L  + + SL VEGG  V  SF
Sbjct: 241 WIIVGTDVNQEKIASYESKNITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 300

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327
           + ++  + II Y S  +IG    P+
Sbjct: 301 LQTKYFNEIITYISPKLIGGSKAPT 325


>gi|83941150|ref|ZP_00953612.1| riboflavin biosynthesis protein RibD [Sulfitobacter sp. EE-36]
 gi|83846970|gb|EAP84845.1| riboflavin biosynthesis protein RibD [Sulfitobacter sp. EE-36]
          Length = 367

 Score =  209 bits (531), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 130/356 (36%), Positives = 187/356 (52%), Gaps = 11/356 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           S DARFM+ AL   R   G    NP+V C+IV+ G ++GRG T  GG PHAE QAL +AG
Sbjct: 2   SDDARFMALALSLGRRGQGAVWPNPAVGCVIVQQGRIVGRGWTQPGGRPHAEPQALRQAG 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
             A+GAT YVTLEPC+H G++PPCA  ++     RVV+   D D RVSG+G+  L   GI
Sbjct: 62  PAAQGATVYVTLEPCAHTGKTPPCADALVAAKPARVVIACTDSDTRVSGKGIAILRAAGI 121

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
           IVD  ++E E +     +  R  E R  +TLK+A S D  I  A   S  IT   ++  V
Sbjct: 122 IVDVGVLEDEARADHLGFFLRVDEGRPMVTLKLASSFDGRIATASGESQWITAPPARRVV 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H +R++ DA++VG GT   DDP LT R  G     P RI++     + L+  + +TA   
Sbjct: 182 HAMRSRHDAVMVGGGTARQDDPSLTVRDLGTTRQ-PTRIVVSNGLDIPLNGTLARTANDI 240

Query: 244 PVIIVTENDDPV-LALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298
           P+I+      P  L   +      +I C  +    D   +L  L   G+T +  EGG  +
Sbjct: 241 PLILCHGPKAPAELIGTWESLGATLISCAPKMGQIDADDMLQQLGRHGLTRIFCEGGGGL 300

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCVRRDYFGSDV 350
           A + +   LVD ++ + + + +G  G+P  +PL+   L +   F        G D+
Sbjct: 301 AATLLKENLVDQLVGFTAGLALGADGLPAIAPLQLPRLAQAPRFTLTETSRIGPDL 356


>gi|113969440|ref|YP_733233.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Shewanella sp. MR-4]
 gi|113884124|gb|ABI38176.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Shewanella sp. MR-4]
          Length = 381

 Score =  209 bits (531), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 131/339 (38%), Positives = 190/339 (56%), Gaps = 18/339 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S  D + MS A++ +R     T  NPSV C+IVKD  ++G G     G PHAEV AL
Sbjct: 1   MNWSELDNQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE ARGATAYVTLEPCSHYGR+PPCA  +I  G++RVVV V+DP+ +V GRG+Q L 
Sbjct: 61  RMAGELARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLR 120

Query: 121 QKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI VD  +  +    L+  ++ R       +T+K+A S D    ++   S  ITG  +
Sbjct: 121 DAGIQVDVGLHRDEAYALNLGFMKRMESGLPWVTVKLAASLDGKTALSNGVSKWITGPEA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFK 229
           +  V  LR ++ A++ GI TVLADDP L  R + L          Q   P+R+ILD   +
Sbjct: 181 RRDVQRLRLRACALVTGIDTVLADDPSLNVRYSELGSLSSQLSEAQILQPLRVILDSRCR 240

Query: 230 LSLDSKIIKTALLAPVIIV-TENDDPVL--ALAFRKKNINIIYCDCR-DLKKLLTILVGR 285
           + + + ++  A+ +P+++V TE   P     L      + +   D R  L  LL+ L G+
Sbjct: 241 MPITAALL--AIESPMLLVSTEPYSPAFMAQLPAHVTCLQLPAIDGRISLPALLSYL-GK 297

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
               +L+E GA +A +FI   L D ++LY++  ++G  G
Sbjct: 298 SCNQVLIEAGATLAGAFIGDGLADELVLYQAMKILGAQG 336


>gi|262376969|ref|ZP_06070195.1| riboflavin biosynthesis protein RibD [Acinetobacter lwoffii SH145]
 gi|262308007|gb|EEY89144.1| riboflavin biosynthesis protein RibD [Acinetobacter lwoffii SH145]
          Length = 362

 Score =  209 bits (531), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 130/325 (40%), Positives = 188/325 (57%), Gaps = 20/325 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  +R     T  NP+V C+IVKDGIVIG G     G PHAEV AL +AGE+
Sbjct: 7   DQVWMRRAIELARQGQYSTKPNPNVGCVIVKDGIVIGEGFHPQAGQPHAEVFALRQAGEQ 66

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPC+HYGR+PPCA+ ++E G+ +VVV   DP+  V+G+G+Q L    I V
Sbjct: 67  ARGATAYVTLEPCAHYGRTPPCAKGLVEAGVAKVVVACPDPNPLVAGKGVQILKDAEIEV 126

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  + E E       +L        ++ LKIA S D    MA   S  ITG  ++  V  
Sbjct: 127 EIGICEDEAHQLNQGFLKAMATGMPYMRLKIASSLDGRTAMASGESKWITGLAARQDVQH 186

Query: 186 LRAQSDAILVGIGTVLADDPELTCR-LNGLQE----HSPMRIILDPHFKLSLDSKIIKTA 240
            RA S A++ GI TVLADD EL  R L+GL++      P RIILD   +L L++KI    
Sbjct: 187 WRAISGAVITGIDTVLADDCELNVRQLDGLEDIKTVVQPKRIILDRQGRLPLNAKI---- 242

Query: 241 LLAPVIIVTENDDPVLALAFRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAA 297
           L+ P  ++           FR++  ++ +++   + L +LL  LV +  +  +LVE GA 
Sbjct: 243 LVQPETVMVMG-------PFRQELADLGVLHLPVQPLAELLKQLVQQHQIYDVLVEAGAT 295

Query: 298 VAHSFINSRLVDSIILYRSQIVIGE 322
           ++ +F+  +LVD +I Y +  ++G+
Sbjct: 296 LSTAFLQQKLVDELISYVAPTLLGQ 320


>gi|325204773|gb|ADZ00227.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
           M01-240355]
          Length = 361

 Score =  209 bits (531), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 122/321 (38%), Positives = 177/321 (55%), Gaps = 9/321 (2%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
            M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +AGE A+G
Sbjct: 1   MMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQAGEMAQG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           ATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   GI  +  
Sbjct: 61  ATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAAGIKTECG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  V +LRA
Sbjct: 121 LLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTTLSDGSSFWITGEDARADVQVLRA 180

Query: 189 QSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           +S A+L GIGTVLAD+P L  R    L++  P RI+LD   +L LDS ++        I 
Sbjct: 181 ESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQSPTYIA 238

Query: 248 VTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             E ++  L       +I I+          DL  L+ +L   G   ++VE G+ +  +F
Sbjct: 239 TLERNEDRLHPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAGSELTSAF 298

Query: 303 INSRLVDSIILYRSQIVIGEG 323
           +   L D I+LYRS  ++G G
Sbjct: 299 LAEDLADEIVLYRSPKILGSG 319


>gi|42783225|ref|NP_980472.1| riboflavin biosynthesis protein RibD [Bacillus cereus ATCC 10987]
 gi|42739153|gb|AAS43080.1| riboflavin biosynthesis protein RibD [Bacillus cereus ATCC 10987]
          Length = 370

 Score =  209 bits (531), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 122/325 (37%), Positives = 180/325 (55%), Gaps = 6/325 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE+
Sbjct: 3   DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVYALHMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +I+ G++RVV+   D +  VSG G + L + GI +
Sbjct: 63  AKGATVYVTLEPCSHFGKTPPCCELLIKKGVKRVVIATLDCNPLVSGNGKRKLEEAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  S+  VH 
Sbjct: 123 TTGVLEAEAILLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEESRADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            R   DAILVG+ TV+AD+P LT R+ NG Q  +P+R+ILD H +    S +I   L   
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDGLAPT 240

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            I V    D     ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF
Sbjct: 241 WIFVGNGVDKKKIASYESENIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 300

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327
           + ++  + I+ Y S  +IG    P+
Sbjct: 301 LQTKYFNEIVTYISPKLIGGKNAPT 325


>gi|326941086|gb|AEA16982.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 365

 Score =  208 bits (530), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 121/323 (37%), Positives = 182/323 (56%), Gaps = 8/323 (2%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL  ++   G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARG
Sbjct: 7   YMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           AT YVTLEPCSHYGR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  
Sbjct: 67  ATIYVTLEPCSHYGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVG 126

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + E E K     +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R 
Sbjct: 127 VCEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRN 186

Query: 189 QSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           ++ AILVG  TV  D+P LT R+ NG    +P+RIILD   ++ +++ ++        I 
Sbjct: 187 ENAAILVGANTVQKDNPSLTTRIPNG---RNPIRIILDSTLRIPMEANVVTDGEAPTWIF 243

Query: 248 VTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
            T N       A     + +         +L ++L +L  +GV+SLL+EGG  V  SFI 
Sbjct: 244 TTSNHAAKKKKALENAGVKVFVTSGEKHINLHEILDVLGQKGVSSLLIEGGGEVNASFIE 303

Query: 305 SRLVDSIILYRSQIVIGEGGIPS 327
           ++L++ +ILY +  +IG    PS
Sbjct: 304 NKLMNKLILYVAPKIIGGRLAPS 326


>gi|260914242|ref|ZP_05920715.1| riboflavin biosynthesis protein RibD [Pasteurella dagmatis ATCC
           43325]
 gi|260631875|gb|EEX50053.1| riboflavin biosynthesis protein RibD [Pasteurella dagmatis ATCC
           43325]
          Length = 377

 Score =  208 bits (530), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 120/331 (36%), Positives = 190/331 (57%), Gaps = 15/331 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ DA FM  AL  ++     T+ NPSV C++VKDG ++G+G     G PHAEV AL +A
Sbjct: 5   SAQDAVFMQMALDLAQQGQFTTTPNPSVGCVLVKDGSIVGKGFHFKAGEPHAEVMALRDA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE+A+GATAYVTLEPCSH+GR+PPCA+ +IE G+ RVV  + DP+ +V+G+GLQ L+++G
Sbjct: 65  GEQAKGATAYVTLEPCSHFGRTPPCAKGLIEAGVARVVSAMRDPNPQVAGKGLQMLAEQG 124

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I     ++E + +     +L R    +  + LK+A+S D    +A   S  IT  +S+  
Sbjct: 125 IESAVGLLEEKAEWLNRGFLKRMRTGKPFVQLKMAMSLDGRTALANGESKWITSELSRQD 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231
           V + RA++ AIL    TV+ADDP L  R   L +             P+R+ILD   ++ 
Sbjct: 185 VQVERAKASAILSASSTVIADDPLLNVRWEQLPKQVQQQYKHENLRQPIRVILDSQNQVQ 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
              ++ +    +PV  V++++  +       + I I+      L  L+  L  R + +L 
Sbjct: 245 PTQRLFQVD--SPVWFVSKSERDLSGYPQSCEQI-ILEDKAEYLHNLMLELGKRQINTLW 301

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
           +E GA +A + I + LVD +I+Y +  ++G+
Sbjct: 302 IEAGATLAGALIEANLVDELIIYTAPKLLGD 332


>gi|83593160|ref|YP_426912.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Rhodospirillum rubrum ATCC 11170]
 gi|83576074|gb|ABC22625.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Rhodospirillum rubrum ATCC 11170]
          Length = 367

 Score =  208 bits (530), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 136/323 (42%), Positives = 191/323 (59%), Gaps = 8/323 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  AL  +   +G    NP+V C++V   G V+GRG T  GG PHAE +AL+ AG  ARG
Sbjct: 1   MRTALGLAARGLGRVWPNPAVGCVLVDAQGRVVGRGWTQPGGRPHAEREALDRAGAAARG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128
           ATAYVTLEPCSH+G++PPCA  +I+ G+ RVV  + DPD RVSGRG   L   G++V+  
Sbjct: 61  ATAYVTLEPCSHHGKTPPCADALIDAGVVRVVAALGDPDPRVSGRGFAQLRAAGVVVETG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++  E +     +L  ++  R  +TLK A + D  I  AG  S  ITG  ++   HLLRA
Sbjct: 121 LLVDEARALNLGFLLHRLRGRPLVTLKAATTLDGRIATAGGDSQWITGPQARRYGHLLRA 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
             DAI +G+GT LADDP L+CRL GL++ SP+R++ D    L L   ++++A   P+ I+
Sbjct: 181 DHDAIAIGLGTALADDPLLSCRLAGLEDRSPLRVVFDSALALPLGGALVRSADRLPLWII 240

Query: 249 TENDDPVL---ALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           T          AL  R   I  +  D R    +   L+ L G+GVT LLVEGG  +A +F
Sbjct: 241 TTAAATAARRQALVERGAEILEVEADPRGRPTIAGALSALAGQGVTRLLVEGGGHLAAAF 300

Query: 303 INSRLVDSIILYRSQIVIGEGGI 325
           + + LVD +  +R+  +IG  G+
Sbjct: 301 LAADLVDRLAWFRAARLIGGDGL 323


>gi|317122797|ref|YP_004102800.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Thermaerobacter marianensis DSM 12885]
 gi|315592777|gb|ADU52073.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Thermaerobacter marianensis DSM 12885]
          Length = 427

 Score =  208 bits (530), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 143/357 (40%), Positives = 195/357 (54%), Gaps = 15/357 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  ALR +    G T  NP V  +IV+DG V+G G     G PHAE++AL  AGE 
Sbjct: 35  DRAFMRRALRLASRARGRTHPNPMVGAVIVRDGEVVGEGFHRRAGEPHAEIEALRMAGER 94

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGAT YVTLEPC HYGR+PPC   II  G+RRVVV + DPD RV+GRG+  L+  GI V
Sbjct: 95  ARGATLYVTLEPCCHYGRTPPCTGAIISAGLRRVVVAMVDPDPRVAGRGIAALAAAGIEV 154

Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +E E    L+ AY+  +   R  +T K A++ D  I  A   S  +TG  ++   H 
Sbjct: 155 AVGLEEEAARRLNEAYIVHRRLGRPMVTAKYAMTLDGRIATARGDSRWVTGIRARRWAHR 214

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR + DAILVG+GTVLADDP LT RL+      P+RI+LD H +    +++++ A  +P 
Sbjct: 215 LRDRVDAILVGVGTVLADDPLLTVRLH-PGGRDPLRIVLDSHARTPPTARVVQVARQSPA 273

Query: 246 ---IIVTENDDPVLALAFRKKNINIIYC----DCR-DLKKLLTILVGRGVTSLLVEGGAA 297
              + VT            +    ++      D R  L  LL +L   GV  LLVEGGA+
Sbjct: 274 PTWVAVTPGAPAARVRGLEEAGARVVTLPAGPDGRVSLPHLLRLLAAEGVVHLLVEGGAS 333

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK--NFMCVRRDY---FGSD 349
           V  +F  +RLVD ++   +  + G    P P+    +E+  +   +RR +    GSD
Sbjct: 334 VHGAFFGARLVDRVVALVAPKLAGGAEAPGPIAGPGVERMADAPVLRRVFARRLGSD 390


>gi|304388339|ref|ZP_07370452.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis ATCC
           13091]
 gi|304337656|gb|EFM03812.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis ATCC
           13091]
          Length = 369

 Score =  208 bits (530), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 122/327 (37%), Positives = 179/327 (54%), Gaps = 9/327 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  ALR +      TS NP V C+I     V+G+G     G PHAEV AL +A
Sbjct: 3   SDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQVVGQGFHVKAGEPHAEVHALHQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+G   L   G
Sbjct: 63  GEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGFAMLEAAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  
Sbjct: 123 IKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V +LRA+S A+L GIGTVLAD+P L  R    L++  P RI+LD   +L  +S ++    
Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPNSHLVTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296
               I   E ++  L       ++ I+      D + DL  L+ +L   G   ++VE G+
Sbjct: 241 SPTYIATLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +  +F+   L D I+LYRS  ++G G
Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGSG 327


>gi|296503905|ref|YP_003665605.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
           thuringiensis BMB171]
 gi|296324957|gb|ADH07885.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
           thuringiensis BMB171]
          Length = 365

 Score =  208 bits (530), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 121/323 (37%), Positives = 182/323 (56%), Gaps = 8/323 (2%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL  ++   G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARG
Sbjct: 7   YMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           AT YVTLEPCSH+GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  
Sbjct: 67  ATIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVG 126

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + E E K     +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R 
Sbjct: 127 VCEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRN 186

Query: 189 QSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           ++ AILVG  TV  D+P LT R+ NG    +P+RIILD   ++ +++ ++        I 
Sbjct: 187 ENAAILVGANTVQKDNPSLTTRIPNG---RNPIRIILDSTLRIPMEANVVTDGEAPTWIF 243

Query: 248 VTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
            T N       A     + +         +L ++L +L  +GV+SLL+EGG  V  SFI 
Sbjct: 244 TTSNHAAKKKKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIE 303

Query: 305 SRLVDSIILYRSQIVIGEGGIPS 327
           ++L+D +ILY +  +IG    PS
Sbjct: 304 NKLMDKLILYVAPKIIGGRLAPS 326


>gi|240079985|ref|ZP_04724528.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Neisseria gonorrhoeae FA19]
 gi|268596126|ref|ZP_06130293.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae FA19]
 gi|268549914|gb|EEZ44933.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae FA19]
          Length = 369

 Score =  208 bits (530), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 122/327 (37%), Positives = 184/327 (56%), Gaps = 9/327 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  +   M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +A
Sbjct: 3   SDTNISMMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   G
Sbjct: 63  GEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  ++E++ +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  
Sbjct: 123 IKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V +LRA+S A+L GIGTVLAD+P L  R    L++  P RI+LD   +L  DS+++    
Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPDSRLLTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296
              +I   E ++  L    +  ++ I+      D + DL  L+ +L   G   ++VE G+
Sbjct: 241 SPTLIATLERNEDRLRPYRKHAHVRILMPSETADGKIDLHHLIRLLADEGFGEIMVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +  +F+   L D I+LYRS  ++G G
Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGGG 327


>gi|329929844|ref|ZP_08283520.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. HGF5]
 gi|328935822|gb|EGG32283.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. HGF5]
          Length = 366

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 129/338 (38%), Positives = 187/338 (55%), Gaps = 10/338 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +MS AL  +    G T  NP V C++VKDG + G G     G PHAEV AL  AG +
Sbjct: 6   DEFYMSLALDLAERAQGQTGINPVVGCVVVKDGALAGVGTHLERGTPHAEVHALNMAGPK 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A G+T YVTLEPCSHYG +PPC++ +I  G+RRVVV  +DP+  V+GRG+Q L   GI V
Sbjct: 66  AAGSTVYVTLEPCSHYGATPPCSERLIAKGVRRVVVACEDPNPLVAGRGIQMLRAAGIEV 125

Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  +  +  + L+ A++      R  +TLK A + D  I      S  I+   S+  VH 
Sbjct: 126 ETGILKDRALRLNEAFVKFITTGRPFVTLKTASTLDGKIASKTGDSKWISNEKSRELVHT 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR +   I+VG+ TV+AD+P LT RL G++   P+RII+D   ++ LDS ++   L    
Sbjct: 186 LRHRHQGIMVGVSTVIADNPSLTTRL-GVKGLHPVRIIVDSSLRIPLDSHVVLDGLAPTW 244

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           I+ TE  D        +  + +I C      DLK  L  L  +G+ S+L+EGG  +  S 
Sbjct: 245 ILTTEQADDTKRTELEELGVQVIPCGPGPRVDLKGALLQLGQKGIASILLEGGGTLNGSM 304

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKN 337
           +  +LVD +I + +  +I  GG  +P   +  GY + N
Sbjct: 305 LEQKLVDRLIQFIAPKII--GGYDAPGNYMFSGYEQMN 340


>gi|59800550|ref|YP_207262.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Neisseria gonorrhoeae FA 1090]
 gi|293397713|ref|ZP_06641919.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae F62]
 gi|59717445|gb|AAW88850.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Neisseria gonorrhoeae FA 1090]
 gi|291611659|gb|EFF40728.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae F62]
          Length = 369

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 123/327 (37%), Positives = 181/327 (55%), Gaps = 9/327 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  +   M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +A
Sbjct: 3   SDTNISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   G
Sbjct: 63  GEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  ++E++ +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  
Sbjct: 123 IKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V +LRA+S A+L GIGTVLAD+P L  R    L++  P RI+LD   +L  +S ++    
Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPNSHLVTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296
               I   E D+  L       +I I+      D + DL  L+ +L   G   ++VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +  +F+   L D I+LYRS  ++G G
Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGGG 327


>gi|206976286|ref|ZP_03237194.1| riboflavin biosynthesis protein RibD [Bacillus cereus H3081.97]
 gi|206745482|gb|EDZ56881.1| riboflavin biosynthesis protein RibD [Bacillus cereus H3081.97]
          Length = 370

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 121/325 (37%), Positives = 184/325 (56%), Gaps = 6/325 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 3   DQEYMRIALQLAEGTFGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YVTLEPCSH+G++PPC + +I+  ++RVV+   D +  VSG G + L + GI V
Sbjct: 63  AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKKRLEEAGIEV 122

Query: 127 DRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +  E  + L+ Y    ++ KR  +T+K A+S D         S  IT   ++  VH 
Sbjct: 123 TTGVLEEEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITSEDARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            R   DAILVG+ TV+AD+P LT R+ NG Q  +P+R+ILD H +    S +I  +L   
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDSLAPT 240

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            IIV ++ +P    ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF
Sbjct: 241 WIIVGKDVNPEKIASYESENIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 300

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327
           + ++  + I+ Y S  +IG    P+
Sbjct: 301 LQTKYFNEIVTYISPKLIGGKNAPT 325


>gi|228959585|ref|ZP_04121266.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800077|gb|EEM47013.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 358

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 127/350 (36%), Positives = 191/350 (54%), Gaps = 18/350 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  ++   G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARG 
Sbjct: 1   MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGG 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPCSH+GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  +
Sbjct: 61  TIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            E E K     +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R +
Sbjct: 121 CEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTGARQEVHQIRNE 180

Query: 190 SDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + AILVG  TV  D+P LT R+ NG    +P+RIILD   ++ +++ ++        I  
Sbjct: 181 NAAILVGANTVQKDNPSLTTRIPNG---RNPIRIILDSTLRIPMEANVVTDGEAPTWIFT 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           T N      +A     + +         +L ++L +L  +GV+SLLVEGG  V  SFI +
Sbjct: 238 TSNHAAKKKIALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLVEGGGEVNASFIEN 297

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----------NFMCVRRDY 345
           +L+D +ILY +  +IG    PS +E   + K          +F  V +DY
Sbjct: 298 KLMDKLILYVAPKIIGGRLAPSFVEGTGITKMQDAIEFKDVSFTQVGKDY 347


>gi|329118503|ref|ZP_08247207.1| riboflavin biosynthesis protein RibD [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327465238|gb|EGF11519.1| riboflavin biosynthesis protein RibD [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 374

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 130/324 (40%), Positives = 189/324 (58%), Gaps = 8/324 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D R M  AL  +R     TS NP V C+I + G ++G+G     G PHAEV AL +A
Sbjct: 9   SDTDRRHMRTALALAREGRFTTSPNPRVGCVIARGGQIVGQGFHLRAGEPHAEVHALRQA 68

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPC+H+GR+PPCAQ +I  G+ RVV  V DP+ +V+G+GL  L+  G
Sbjct: 69  GELARGATAYVTLEPCAHHGRTPPCAQALIAAGVSRVVAAVSDPNPQVAGKGLAMLAAAG 128

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  + E+E +   H +L+R    R  + LK A S D    ++   S  IT   ++  
Sbjct: 129 IAAECGLFEAEARELNHGFLSRIERGRPFLRLKCAASLDGKTALSDGQSQWITDEATRAD 188

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH+LRA+S A+L GIGTVLADDP LT R   +   +P R++LD   +L   +K++     
Sbjct: 189 VHILRAESCAVLTGIGTVLADDPLLTVRGFPVVR-APARVVLDSRLRLPQTAKLLADP-S 246

Query: 243 APVIIVTENDDPVLALAF-RKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297
           APV+++T   DP    AF R  ++++      D    L   L +L   G+  +L E GA 
Sbjct: 247 APVLLLTGEADPAKHAAFARFAHVSVHTVPLSDGLISLPAALALLAREGIGEVLAETGAT 306

Query: 298 VAHSFINSRLVDSIILYRSQIVIG 321
           ++ + + + LVD I+LY++  ++G
Sbjct: 307 LSGALLRADLVDEIVLYQAAKILG 330


>gi|257468833|ref|ZP_05632927.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium
           ulcerans ATCC 49185]
 gi|317063083|ref|ZP_07927568.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium ulcerans ATCC 49185]
 gi|313688759|gb|EFS25594.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium ulcerans ATCC 49185]
          Length = 358

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 122/359 (33%), Positives = 203/359 (56%), Gaps = 15/359 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M  AL  +    G  + NP V  ++VKDG ++G G     G PHAEV ALEEAGE+
Sbjct: 2   DKKYMERALELAALGEGNVNPNPMVGAVVVKDGKILGEGYHRKYGGPHAEVFALEEAGEK 61

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSHYG++PPCA+ II+ GI+R V+   DP+  VSGRG++ ++  GI +
Sbjct: 62  AKGATIYVTLEPCSHYGKTPPCAKKIIDMGIKRCVIASLDPNPLVSGRGIKMMTDAGIEV 121

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  +ME E       ++     K  ++ LK  ++ D  I      S  IT  +++ +V  
Sbjct: 122 ITGIMEKEALELNRVFMKYISTKTPYLFLKCGITLDGKIASRTGNSKWITNELAREKVQR 181

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
           LR +   I+VGI TVLADDP LT R+ NG    +P RI++DP   + LDSK +       
Sbjct: 182 LRNKYMGIMVGINTVLADDPSLTARIENG---RNPYRIVIDPFLDIPLDSKFVNFEDGKS 238

Query: 245 VIIVTENDDPVLALA-FRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHS 301
           +++ + N+     ++  + KN+N+I+ +  + K   +L  +   G+ ++L+EGG+ +   
Sbjct: 239 ILVTSYNNVEKEKISLLKNKNVNVIFLEGTNFKICDILKKVGETGIDAVLLEGGSFLISR 298

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN------FMCVRRDYFGSDVCLEY 354
               + +D   ++ +  ++G+G    P  +G+  +N         V+ + +G++V +E+
Sbjct: 299 AFAEKAIDGGEIFIAPKILGDGE-AVPFIKGFTCENISDGFQLENVKINNYGNNVSMEF 356


>gi|307244664|ref|ZP_07526768.1| riboflavin biosynthesis protein RibD [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492045|gb|EFM64094.1| riboflavin biosynthesis protein RibD [Peptostreptococcus stomatis
           DSM 17678]
          Length = 372

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 139/380 (36%), Positives = 207/380 (54%), Gaps = 30/380 (7%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63
            + ++MS A+  ++   G T+ NP V  +IVKDG V+G+G   + GC HAE +AL++   
Sbjct: 1   MEEKYMSMAIELAKKACGYTNPNPMVGAVIVKDGQVLGKGYHTWCGCLHAEREALKDCQS 60

Query: 64  -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
            G    GAT YVTLEPC HYG++PPC + IIE GI +VVV   DP+ +V+G+G+Q L   
Sbjct: 61  RGVTVTGATMYVTLEPCCHYGKTPPCTEAIIENGIAKVVVGSLDPNPKVAGKGIQILKDH 120

Query: 123 GI-IVDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           GI +V  +ME E     ++F+H Y+     K+  + +K A++ D  I      S  ITG 
Sbjct: 121 GINVVTGVMEKECDDLNEVFMH-YIKN---KKPFVVMKYAMTADGKIATRTGKSQWITGP 176

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKI 236
            ++ QVH  R +   I+VGIGTVLADDP L CRL +GL   SP RII D   ++ +DS I
Sbjct: 177 EARGQVHKDRHRYAGIMVGIGTVLADDPTLNCRLEDGL---SPTRIICDTSLRIPMDSNI 233

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLV 292
           ++TA     II T + D       ++ +  I+  D +    DL  L+  +   G+ S+L+
Sbjct: 234 VRTAKTYDTIIATRSKDNEKIRKLKEASCQILVQDGQADRIDLVDLMDKVGSMGLDSVLL 293

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY------LEKNFMCVRRDYF 346
           EGG  +  S + + +V+ + +Y    + G     SP+  GY        K       + F
Sbjct: 294 EGGGQLNWSALEAGIVNKVQVYIGNKIFGGNDAKSPV-GGYGVDLPDQAKRLKLTGLEKF 352

Query: 347 GSDVCLEYIGKN---LCLQE 363
           G D+ +EY  +N    C QE
Sbjct: 353 GPDLLIEYRVENEVVECSQE 372


>gi|24374975|ref|NP_719018.1| riboflavin biosynthesis protein RibD [Shewanella oneidensis MR-1]
 gi|24349701|gb|AAN56462.1|AE015783_5 riboflavin biosynthesis protein RibD [Shewanella oneidensis MR-1]
          Length = 381

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 128/339 (37%), Positives = 191/339 (56%), Gaps = 18/339 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S  D + MS A++ +R     T  NPSV C+IV D  ++G G     G PHAEV AL
Sbjct: 1   MNWSVLDNQMMSRAIQLARKGFYTTRPNPSVGCVIVNDNQIVGEGYHQKAGEPHAEVHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE ARGATAYVTLEPCSHYGR+PPCA  +I  G++RVVV V+DP+ +V GRG+Q L 
Sbjct: 61  RMAGELARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLR 120

Query: 121 QKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI VD  +  +    L+  ++ R       +T+K+A S D    ++   S  ITG  +
Sbjct: 121 DAGIQVDVGLHRDEAYALNLGFMKRMESGLPWVTVKLAASLDGKTALSNGVSKWITGPEA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFK 229
           +  V  LR +S A++ GI TVLADDP L  R + L          Q   P+R++LD   +
Sbjct: 181 RRDVQRLRLRSCALITGIETVLADDPSLNVRYSELGSLRAQLSESQVLQPLRVVLDSRAR 240

Query: 230 LSLDSKIIKTALLAPVIIVTE---NDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGR 285
           + + + +   A+ +P+++V+    + D ++ L      + +   + R  L  LL+ L G+
Sbjct: 241 MPITAALF--AIESPILLVSTVSYSSDFMVQLPAHVTCLQLPAIEGRISLSALLSYL-GK 297

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
               +L+E GA +A +FI S L D ++LY++  ++G  G
Sbjct: 298 SCNQVLIEAGATLAGAFIGSGLADELVLYQAMKILGGQG 336


>gi|126727883|ref|ZP_01743711.1| riboflavin biosynthesis protein RibD [Rhodobacterales bacterium
           HTCC2150]
 gi|126702824|gb|EBA01929.1| riboflavin biosynthesis protein RibD [Rhodobacterales bacterium
           HTCC2150]
          Length = 364

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 120/326 (36%), Positives = 181/326 (55%), Gaps = 9/326 (2%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D R+M  A+      +G T  NP+V C+IVKDG V+ R  TA GG PHAE QAL+  G
Sbjct: 4   ATDERWMRLAISLGAQRLGQTWPNPAVGCVIVKDGRVLARAATAPGGRPHAETQALD--G 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
             A+G+T YV+LEPC+H G++PPCAQ +I+  + RVV  + DPD RV G+G   LS  GI
Sbjct: 62  INAKGSTVYVSLEPCAHTGKTPPCAQALIDARVARVVYGMRDPDCRVDGKGTSMLSAAGI 121

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V   ++E +       ++T   + R  +TLK+A S D  I  A   S  ITG  ++  V
Sbjct: 122 AVTGPVLEKQALAANQGFITAITKGRPALTLKLATSFDGRIATASGQSQWITGPNARRAV 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H++RA  DAI+VG GT  ADDP LT R+ G+  H P+R+I      + +D  ++     A
Sbjct: 182 HMMRANHDAIMVGAGTARADDPTLTQRVGGI-AHQPIRVICTSDLNIPMDGALVGAIKHA 240

Query: 244 PVIIVTENDDPVLAL-AFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298
           P+ ++   D    A  A+ +K   +I         D+   +  L  +G+T +  EGG  +
Sbjct: 241 PLWLIHGQDAKASARDAWLQKGAKLIQVPSSPNGLDMTVAMQKLCEKGITRVFCEGGGQL 300

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGG 324
           A   + ++LVD ++ + + + +G  G
Sbjct: 301 AAGLLKAKLVDRLVGFTAGMALGGDG 326


>gi|308272935|emb|CBX29539.1| Riboflavin biosynthesis protein ribD [uncultured Desulfobacterium
           sp.]
          Length = 380

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 133/369 (36%), Positives = 198/369 (53%), Gaps = 30/369 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  +    G TS NP V  ++VKDG V G+G     G  HAEV A+++A ++
Sbjct: 17  DLFYMKMAIDLAEKGRGFTSPNPMVGAVVVKDGKVAGKGYHEAYGKAHAEVNAIDDAKKD 76

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           + GAT YVTLEPC+H+G++PPC + IIE GI+RVV  + DP+  V G G ++L   GI V
Sbjct: 77  SFGATLYVTLEPCNHFGKTPPCTKKIIESGIKRVVAAIRDPNPDVKGNGSEYLKNNGIDV 136

Query: 127 -----DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
                 +  E + +IF+    T    KR  + +K A + D  I      S  +TG  S+ 
Sbjct: 137 IFGVCGKEAEKQNEIFIKYTKT----KRPFVMVKCASTLDGNIATKTGDSKWVTGEESRQ 192

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH LR  SDAI+VGI TV  D+PELT R++G+   SP+R+ILD    +S D+ ++    
Sbjct: 193 FVHRLRHYSDAIMVGIDTVKRDNPELTTRIDGMNGLSPVRVILDSRLSISEDALVLNKNS 252

Query: 242 LAPVIIVTENDDPVLALAFRK-----KNINIIYCDCR----DLKKLLTILVGRGVTSLLV 292
            +  I+V  N  P  A+  +K     K I II         +L  L+  L   G+TSLL+
Sbjct: 253 DSDTIMVMSNHAPDKAVLQKKNRLEEKGIKIIESPAENNLINLDILMDTLGLMGITSLLI 312

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI-----PSPLEEGYLEKNFMCVRR---D 344
           EGG+ V  S  + ++VD I  + +  ++G  G+     P P     L ++ + V+     
Sbjct: 313 EGGSRVIASAFSQKIVDKIFFFYAPKILGGDGVSICRGPGPA----LMRDCLPVKEVGIQ 368

Query: 345 YFGSDVCLE 353
            FG D+ +E
Sbjct: 369 KFGDDILIE 377


>gi|149378281|ref|ZP_01895992.1| riboflavin biosynthesis protein RibD [Marinobacter algicola DG893]
 gi|149357446|gb|EDM45957.1| riboflavin biosynthesis protein RibD [Marinobacter algicola DG893]
          Length = 371

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 132/370 (35%), Positives = 193/370 (52%), Gaps = 31/370 (8%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + D  FM+ A++ +      T  NP V C+I +   V+G G     G  HAE +AL +
Sbjct: 2   IDAQDTAFMARAVQLAWRGRYSTHPNPRVGCVIARGSKVLGEGWHERAGEAHAETRALSQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG +ARGATAYVTLEPCSH+GR+PPCA+ +IE GI  V     DP+  VSGRGL  L + 
Sbjct: 62  AGPDARGATAYVTLEPCSHFGRTPPCAKALIEAGIAHVFAATKDPNPSVSGRGLDMLREA 121

Query: 123 GIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V   + +E  + L+  ++ R    R ++ LK+A S D    MA   S  ITG  S+ 
Sbjct: 122 GIRVTEGLLAEEAVRLNPGFMKRMNVGRPYVRLKMAASLDGRTAMASGESQWITGSESRR 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--------HSPMRIILDPHFKLSLD 233
            V  LRA SDA+L G+GTVLAD+P LT R   L +          P+R+I D   +    
Sbjct: 182 DVQRLRAISDAVLTGVGTVLADNPSLTVRRTELGDIGDATEPSRQPLRVIADRDARTPPG 241

Query: 234 SKIIKTALL-----APVIIVTENDD------PVLALAFRKKNINIIYCDCRDLKKLLTIL 282
           + I++   +     +P +      D       +  +A++   I        D+++LL  L
Sbjct: 242 ATILQGGNVQVYCASPTLATAPAQDLAALGVGLTGVAWKDNGI--------DVRELLDSL 293

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFM 339
              G+  LLVE G  +A +FI+ RLVD + LY++ + +G  G P+   PLE    +  + 
Sbjct: 294 GELGINELLVEAGPTLAGTFISERLVDELWLYQAPVFLGSTGRPTANLPLESMADKVQWK 353

Query: 340 CVRRDYFGSD 349
            + R   G D
Sbjct: 354 VLDRRQLGED 363


>gi|217961603|ref|YP_002340173.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH187]
 gi|222097559|ref|YP_002531616.1| riboflavin biosynthesis protein ribd [Bacillus cereus Q1]
 gi|217063616|gb|ACJ77866.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH187]
 gi|221241617|gb|ACM14327.1| riboflavin biosynthesis protein RibD [Bacillus cereus Q1]
          Length = 370

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 121/325 (37%), Positives = 184/325 (56%), Gaps = 6/325 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 3   DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YVTLEPCSH+G++PPC + +I+  ++RVV+   D +  VSG G + L + GI V
Sbjct: 63  AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKKRLEEAGIEV 122

Query: 127 DRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +  E  + L+ Y    ++ KR  +T+K A+S D         S  IT   ++  VH 
Sbjct: 123 TTGVLEEEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITSEDARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            R   DAILVG+ TV+AD+P LT R+ NG Q  +P+R+ILD H +    S +I  +L   
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDSLAPT 240

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            IIV ++ +P    ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF
Sbjct: 241 WIIVGKDVNPEKIASYESENIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 300

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327
           + ++  + I+ Y S  +IG    P+
Sbjct: 301 LQTKYFNEIVTYISPKLIGGKNAPT 325


>gi|167038695|ref|YP_001661680.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X514]
 gi|300913745|ref|ZP_07131062.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X561]
 gi|307723238|ref|YP_003902989.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X513]
 gi|166852935|gb|ABY91344.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X514]
 gi|300890430|gb|EFK85575.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X561]
 gi|307580299|gb|ADN53698.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X513]
          Length = 360

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 123/330 (37%), Positives = 186/330 (56%), Gaps = 15/330 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL  ++   G T+ NP V  +IVK+G +IG G   Y G PHAEV AL+ A E   G
Sbjct: 4   YMKRALTLAKKGWGYTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVENVEG 63

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           +T +VTLEPCSHYG++PPC + II+ GI+RV + ++DP+ +VSG G++ L + GI V   
Sbjct: 64  STMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVHVG 123

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           MME E +     ++     K   + LK A+S D  I      S  IT   S+   H +R 
Sbjct: 124 MMEKEARKLNEIFVKYITTKFPFVILKSAMSIDGKIACYNGNSKWITNEKSRKFAHKIRG 183

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           +  AI+VG+ TV+ D+P LT RL G +  +P+RII+D   ++ LDS +I+      +I  
Sbjct: 184 RVSAIMVGVNTVIKDNPMLTTRLEGYK--NPVRIIVDSRGRIPLDSNVIRDKTAKTIIAT 241

Query: 249 TENDDPVLALAFRKK----NINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
           TE    ++    RKK    +I +I     +    LK+L+  L  RG+ S+L+EGG  +  
Sbjct: 242 TE----LMPNNVRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNW 297

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           S +   +VD ++ + S  +IG     +P+E
Sbjct: 298 SALKEGIVDKVMFFISPRIIGGKNALTPVE 327


>gi|229140846|ref|ZP_04269391.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST26]
 gi|228642636|gb|EEK98922.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST26]
          Length = 379

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 121/325 (37%), Positives = 184/325 (56%), Gaps = 6/325 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YVTLEPCSH+G++PPC + +I+  ++RVV+   D +  VSG G + L + GI V
Sbjct: 72  AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKKRLEEAGIEV 131

Query: 127 DRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +  E  + L+ Y    ++ KR  +T+K A+S D         S  IT   ++  VH 
Sbjct: 132 TTGVLEEEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITSEDARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            R   DAILVG+ TV+AD+P LT R+ NG Q  +P+R+ILD H +    S +I  +L   
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDSLAPT 249

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            IIV ++ +P    ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF
Sbjct: 250 WIIVGKDVNPEKIASYESENIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 309

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327
           + ++  + I+ Y S  +IG    P+
Sbjct: 310 LQTKYFNEIVTYISPKLIGGKNAPT 334


>gi|316984420|gb|EFV63393.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
           H44/76]
 gi|325200879|gb|ADY96334.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
           H44/76]
          Length = 361

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 120/321 (37%), Positives = 178/321 (55%), Gaps = 9/321 (2%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
            M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +AGE A+G
Sbjct: 1   MMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQAGEMAQG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           ATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   GI  +  
Sbjct: 61  ATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAGIKTECG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  V +LRA
Sbjct: 121 LLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVLRA 180

Query: 189 QSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           +S A+L GIGTVLAD+P L  R    L++  P RI+LD   +L  +S ++        I 
Sbjct: 181 ESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPNSHLVTDGQSPTYIA 238

Query: 248 VTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             E ++  L       ++ I+      D + DL  L+ +L   G   ++VE G+ +  +F
Sbjct: 239 TLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 298

Query: 303 INSRLVDSIILYRSQIVIGEG 323
           +   L D I+LYRS  ++G G
Sbjct: 299 LAENLADEIVLYRSPKILGSG 319


>gi|323702710|ref|ZP_08114371.1| riboflavin biosynthesis protein RibD [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532373|gb|EGB22251.1| riboflavin biosynthesis protein RibD [Desulfotomaculum nigrificans
           DSM 574]
          Length = 375

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 127/365 (34%), Positives = 194/365 (53%), Gaps = 18/365 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  AL  +R   G TS NP V  ++VKDG V+G+G  A  G  HAEV AL +AGE+
Sbjct: 4   DKHFMQMALELARKARGRTSPNPMVGAVVVKDGQVVGQGWHAKAGTAHAEVVALADAGEQ 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGAT YVTLEPC H+GR+ PC + +++ G++RVV  + DP+  V+G+GL  L   G+ V
Sbjct: 64  ARGATVYVTLEPCCHHGRTGPCTEALLKAGVKRVVAAMTDPNPLVAGKGLAILRDAGVEV 123

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++ESE +     ++      R  + LK A S D  I  A   S  ITG  ++ + H 
Sbjct: 124 QVGVLESEARQLNEIFIKYITTGRPFVVLKAATSLDGKIATATGESKWITGAAARTEGHR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR   DAILVG+ T+LADDP LT RL   +   P+R+++D   +    ++++     A  
Sbjct: 184 LRDIYDAILVGVNTILADDPALTTRLPEGRGKDPIRVVVDSTARTPTSARVLIQQSAAHT 243

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR---------DLKKLLTILVGRGVTSLLVEGGA 296
           II T    P    A R+ ++     +           DL KL+ +L  R +TS+L+EGG 
Sbjct: 244 IIATTEAAP----AERRASLMAAGAEVLVVPGQGPRVDLVKLMELLGQRQITSVLIEGGG 299

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
            +  S + + +VD +  + +  +IG    P P+         M +       +V L+ +G
Sbjct: 300 KINGSALAAGIVDKVAWFLAPKIIGGDAAPGPVRGA----GIMSLNDATKLYNVSLQRVG 355

Query: 357 KNLCL 361
           +++ +
Sbjct: 356 EDILI 360


>gi|292669813|ref|ZP_06603239.1| riboflavin biosynthesis protein RibD [Selenomonas noxia ATCC 43541]
 gi|292648610|gb|EFF66582.1| riboflavin biosynthesis protein RibD [Selenomonas noxia ATCC 43541]
          Length = 370

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 135/358 (37%), Positives = 191/358 (53%), Gaps = 7/358 (1%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D  +M  ALR + +  G TS NP V  LIV+DG+V+  G     G PHAE+ AL  AG
Sbjct: 6   ALDESYMREALRLAEFARGRTSPNPLVGALIVRDGVVVANGWHRAAGEPHAEIHALRMAG 65

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           + ARGA  YVTLEPC+H+GR+ PCA+ +I  G+ RVVV + DP+  V+GRG+  L   GI
Sbjct: 66  DLARGAALYVTLEPCAHHGRTGPCAEAVIAAGVARVVVALCDPNPLVAGRGIAMLEAAGI 125

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +V  ++E E +     +L     KR  +TLK A++ D  I      S  ITG  ++ +V
Sbjct: 126 EVVTGVLEDEARRQNETFLKWITTKRPFVTLKTAMTLDGKIASRTGASAWITGESARMRV 185

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  R   DAIL+GIGT+LADDP LT RL     H P+RI+LD   +  + +K++      
Sbjct: 186 HEYRDAYDAILIGIGTLLADDPSLTARLPDRPGHHPLRIVLDSEARTPISAKLVTDGAAP 245

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            VI V+E  DP      R     ++       D+  LL  L  R  TSL VEGGA    S
Sbjct: 246 TVIAVSERADPKRMNLLRACGAEVVTLGAERVDIGCLLDWLGERECTSLFVEGGAEANWS 305

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
           F+     D +  + + +++G    P+P+     +     +R      DV +E IG +L
Sbjct: 306 FLAGGHADKVHAFIAPMLMGGAAAPTPVGGAGFDSPQTALRL----GDVTVEQIGMDL 359


>gi|294788324|ref|ZP_06753567.1| riboflavin biosynthesis protein RibD [Simonsiella muelleri ATCC
           29453]
 gi|294483755|gb|EFG31439.1| riboflavin biosynthesis protein RibD [Simonsiella muelleri ATCC
           29453]
          Length = 363

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/324 (37%), Positives = 188/324 (58%), Gaps = 12/324 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +      TS NP V C+I     ++G+G     G PHAEV AL +A
Sbjct: 6   SDLDHAHMHRALELAWQGRFSTSPNPRVGCVIAHGEQIVGQGFHVKAGEPHAEVHALRQA 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G  A+GATAYVTLEPC+HYGR+PPCA+ + E G+ RVV  + DP+  V+G+GL  L+  G
Sbjct: 66  GSLAQGATAYVTLEPCAHYGRTPPCAESLRESGVARVVAAMRDPNPLVAGKGLAILTAAG 125

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           ++V+  ++E + +     +L+R   KR  I+LK+A S D    ++   S  ITG ++++ 
Sbjct: 126 VLVECGLLEHKARELNRGFLSRIERKRPFISLKMAASFDGKTALSDGCSKWITGELARSD 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V  LRAQS AIL GIGT+LAD+P+L  R  N L++  P+R+ILD +F+L   S++++   
Sbjct: 186 VQQLRAQSCAILTGIGTILADNPQLNVRQFNTLRQ--PIRVILDSYFRLPEKSQVVQDD- 242

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
                + T  D P     +  +N+ +     +    +L  +  IL   GV  +L+E G  
Sbjct: 243 -GETWLFTLTDTPSWVAKY--ENLRVFRQPEKIAQLNLHWVSEILAQNGVGEVLLEAGQT 299

Query: 298 VAHSFINSRLVDSIILYRSQIVIG 321
           +A +F+ + LVD I+ ++S  ++G
Sbjct: 300 LATAFLQADLVDEIVYFQSPKILG 323


>gi|229047052|ref|ZP_04192675.1| Riboflavin biosynthesis protein [Bacillus cereus AH676]
 gi|228724291|gb|EEL75625.1| Riboflavin biosynthesis protein [Bacillus cereus AH676]
          Length = 358

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/350 (36%), Positives = 191/350 (54%), Gaps = 18/350 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  ++   G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ RGA
Sbjct: 1   MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQVRGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPCSH+GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  +
Sbjct: 61  TIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            E E K     +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R +
Sbjct: 121 CEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRNE 180

Query: 190 SDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + AILVG  TV  D+P LT R+ NG    +P+RIILD   ++ +++ ++        I  
Sbjct: 181 NAAILVGANTVQKDNPSLTTRIPNG---RNPIRIILDSTLRIPMEANVVTDGEAPTWIFT 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           T N      +A     + +         +L ++L +L  +GV+SLL+EGG  V  SFI +
Sbjct: 238 TSNHAAKKKIALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIEN 297

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----------NFMCVRRDY 345
           +L+D +ILY +  +IG    PS +E   + K          +F  V +DY
Sbjct: 298 KLMDKLILYVAPKIIGGRLAPSFVEGTGITKMQDAIEFKDVSFTQVGKDY 347


>gi|194097710|ref|YP_002000751.1| Riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae
           NCCP11945]
 gi|240013403|ref|ZP_04720316.1| Riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae DGI18]
 gi|240112192|ref|ZP_04726682.1| Riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae MS11]
 gi|193933000|gb|ACF28824.1| Riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae
           NCCP11945]
          Length = 361

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/321 (38%), Positives = 179/321 (55%), Gaps = 9/321 (2%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
            M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +AGE A+G
Sbjct: 1   MMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQAGEMAKG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           ATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   GI  +  
Sbjct: 61  ATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAGIKTECG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++E++ +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  V +LRA
Sbjct: 121 LLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVLRA 180

Query: 189 QSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           +S A+L GIGTVLAD+P L  R    L++  P RI+LD   +L  +S ++        I 
Sbjct: 181 ESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPNSHLVTDGQSPTYIA 238

Query: 248 VTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             E D+  L       +I I+      D + DL  L+ +L   G   ++VE G+ +  +F
Sbjct: 239 TLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 298

Query: 303 INSRLVDSIILYRSQIVIGEG 323
           +   L D I+LYRS  ++G G
Sbjct: 299 LAENLADEIVLYRSPKILGGG 319


>gi|149186473|ref|ZP_01864786.1| riboflavin-specific deaminase/reductase [Erythrobacter sp. SD-21]
 gi|148830062|gb|EDL48500.1| riboflavin-specific deaminase/reductase [Erythrobacter sp. SD-21]
          Length = 329

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 136/324 (41%), Positives = 171/324 (52%), Gaps = 41/324 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           +P +S DAR++ AA R +     L   NP+V CL+V  G VI RG T  GG PHAE  AL
Sbjct: 2   IPTAS-DARWLDAAARLASRGRPLARPNPAVGCLLVNKGRVIARGWTREGGRPHAEAVAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           E+AG  ARGATAYVTLEPC+H   R P C+  +++ G+ RVVV   DPD R SG GL+ L
Sbjct: 61  EQAGSAARGATAYVTLEPCAHRSTRGPACSDLLVKAGVARVVVGALDPDPRTSGEGLERL 120

Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
            + GI V +      K  L  YL R    R H+TLK+A+S D  I MA   S  ITG  +
Sbjct: 121 RRSGIEVSQDYTEAVKASLAGYLIRAHRGRPHVTLKLALSLDGCIAMADGSSQWITGEEA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  VH  RA SDAILVG GT   D P L  RL GL++ SP R++L         S+ +  
Sbjct: 181 RAHVHSRRAMSDAILVGGGTWRQDKPHLDVRLPGLEDRSPARVLL---------SRGV-- 229

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
               P   V   +DP                          I    GV  L VEGGA  A
Sbjct: 230 ----PPDGVKVINDPA------------------------QIAQLEGVHYLYVEGGAGAA 261

Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323
            SF+ + LVD + +YR+ I+IG G
Sbjct: 262 ASFVRADLVDRLEIYRAPILIGNG 285


>gi|240015845|ref|ZP_04722385.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Neisseria gonorrhoeae FA6140]
 gi|240117225|ref|ZP_04731287.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Neisseria gonorrhoeae PID1]
 gi|240120474|ref|ZP_04733436.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Neisseria gonorrhoeae PID24-1]
 gi|240122774|ref|ZP_04735730.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Neisseria gonorrhoeae PID332]
 gi|254492997|ref|ZP_05106168.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae 1291]
 gi|268598251|ref|ZP_06132418.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae MS11]
 gi|268602915|ref|ZP_06137082.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID1]
 gi|268681384|ref|ZP_06148246.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID332]
 gi|226512037|gb|EEH61382.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae 1291]
 gi|268582382|gb|EEZ47058.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae MS11]
 gi|268587046|gb|EEZ51722.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID1]
 gi|268621668|gb|EEZ54068.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID332]
          Length = 369

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 123/327 (37%), Positives = 181/327 (55%), Gaps = 9/327 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  +   M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +A
Sbjct: 3   SDTNISMMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   G
Sbjct: 63  GEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  ++E++ +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  
Sbjct: 123 IKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V +LRA+S A+L GIGTVLAD+P L  R    L++  P RI+LD   +L  +S ++    
Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPNSHLVTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296
               I   E D+  L       +I I+      D + DL  L+ +L   G   ++VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +  +F+   L D I+LYRS  ++G G
Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGGG 327


>gi|239998220|ref|ZP_04718144.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Neisseria gonorrhoeae 35/02]
 gi|268594076|ref|ZP_06128243.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae 35/02]
 gi|268547465|gb|EEZ42883.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae 35/02]
          Length = 369

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 123/327 (37%), Positives = 181/327 (55%), Gaps = 9/327 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  +   M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +A
Sbjct: 3   SDTNISMMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALHQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   G
Sbjct: 63  GEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  ++E++ +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  
Sbjct: 123 IKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V +LRA+S A+L GIGTVLAD+P L  R    L++  P RI+LD   +L  +S ++    
Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPNSHLVTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296
               I   E D+  L       +I I+      D + DL  L+ +L   G   ++VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +  +F+   L D I+LYRS  ++G G
Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGGG 327


>gi|317163508|gb|ADV07049.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 361

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/321 (38%), Positives = 179/321 (55%), Gaps = 9/321 (2%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
            M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +AGE A+G
Sbjct: 1   MMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALHQAGEMAKG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           ATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   GI  +  
Sbjct: 61  ATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAGIKTECG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++E++ +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  V +LRA
Sbjct: 121 LLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVLRA 180

Query: 189 QSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           +S A+L GIGTVLAD+P L  R    L++  P RI+LD   +L  +S ++        I 
Sbjct: 181 ESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPNSHLVTDGQSPTYIA 238

Query: 248 VTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             E D+  L       +I I+      D + DL  L+ +L   G   ++VE G+ +  +F
Sbjct: 239 TLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 298

Query: 303 INSRLVDSIILYRSQIVIGEG 323
           +   L D I+LYRS  ++G G
Sbjct: 299 LAENLADEIVLYRSPKILGGG 319


>gi|297543534|ref|YP_003675836.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296841309|gb|ADH59825.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 360

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 123/330 (37%), Positives = 185/330 (56%), Gaps = 15/330 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL  ++   G T+ NP V  +IVK+G +IG G   Y G PHAEV AL+ A E   G
Sbjct: 4   YMKRALTLAKKGWGYTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVENVEG 63

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           +T +VTLEPCSHYG++PPC + II+ GI+RV + ++DP+ +VSG G++ L + GI V   
Sbjct: 64  STMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVHVG 123

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           MME E +     ++     K   + LK A+S D  I      S  IT   S+   H +R 
Sbjct: 124 MMEKEARKLNEIFVKYITTKFPFVILKSAMSIDGKIACYNGNSKWITNGKSREFAHKIRG 183

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           +  AI+VG+ TV+ D+P LT RL G +  +P+RII+D   ++ LDS +I+      +I  
Sbjct: 184 RVSAIMVGVNTVIKDNPMLTTRLEGYK--NPVRIIVDSRGRIPLDSNVIRDKTAKTIIAT 241

Query: 249 TENDDPVLALAFRKK----NINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
           TE    ++    RKK    +I +I     +    LK+L+  L  RG+ S+L+EGG  +  
Sbjct: 242 TE----LMPNNVRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNW 297

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           S     +VD ++ + S  +IG     +P+E
Sbjct: 298 SAFKEGIVDKVMFFISPRIIGGKNALTPVE 327


>gi|229025568|ref|ZP_04181976.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1272]
 gi|228735750|gb|EEL86337.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1272]
          Length = 370

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 118/324 (36%), Positives = 180/324 (55%), Gaps = 4/324 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++   G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE 
Sbjct: 3   DQEYMALALQLAQGTSGQTSPNPMVGAVVVKDGKIVGMGAHMCAGEEHAEVHALHMAGER 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L + GI +
Sbjct: 63  AKGATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPLVSGNGKRRLEETGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 123 TTGVLEAEATLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESQWITGEEARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TVL D+P LT R+    +H P+R+ILD H +    S +I   L    
Sbjct: 183 YRHMHDAILVGVNTVLTDNPHLTTRIPNGGKH-PIRVILDTHLRTPPSSHVITDGLAPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +     ++   NI +     +  +++ +L++L  + + SL VEGG  V  +F+
Sbjct: 242 IIVGKDVNKEKIASYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFVEGGQTVHANFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327
            +   + I+ Y S  +IG    P+
Sbjct: 302 KTNSFNEIVTYISPKLIGGKDAPT 325


>gi|196047192|ref|ZP_03114408.1| riboflavin biosynthesis protein RibD [Bacillus cereus 03BB108]
 gi|225866095|ref|YP_002751473.1| riboflavin biosynthesis protein RibD [Bacillus cereus 03BB102]
 gi|196021941|gb|EDX60632.1| riboflavin biosynthesis protein RibD [Bacillus cereus 03BB108]
 gi|225786227|gb|ACO26444.1| riboflavin biosynthesis protein RibD [Bacillus cereus 03BB102]
          Length = 370

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/325 (37%), Positives = 181/325 (55%), Gaps = 6/325 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 3   DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC   +I+ GI RVV+   D +  VSG G + L + GI +
Sbjct: 63  AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            R   DAILVG+ TV+AD+P LT R+ NG Q  +P+R+ILD H +    S +I  +L   
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDSLAPT 240

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            IIV  + +     ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF
Sbjct: 241 WIIVGTDVNKEKIASYESENITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 300

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327
           + ++  + II Y S  +IG    P+
Sbjct: 301 LQTKYFNEIITYISPKLIGGSKAPT 325


>gi|228986473|ref|ZP_04146609.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228773294|gb|EEM21724.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 358

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/350 (36%), Positives = 191/350 (54%), Gaps = 18/350 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  ++   G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARG 
Sbjct: 1   MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARGG 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPCSH+GR+ PCA+ I++ GI+RVVV   DP+  VSGRG+Q L   GI ++  +
Sbjct: 61  TIYVTLEPCSHHGRTGPCAEAIVQAGIKRVVVATLDPNPLVSGRGIQILQDAGIDVLVGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            E E K     +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R +
Sbjct: 121 CEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNE 180

Query: 190 SDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + AILVG+ TV  D+P LT R+ NG    +P+R+ILD   ++ +++ ++        I  
Sbjct: 181 NAAILVGVNTVQKDNPSLTTRIPNG---RNPIRVILDSTLRIPMEANVVTDGEAPTWIFT 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           T N       A     + +         +L ++L +L  +G++SLL+EGG  V  SFI +
Sbjct: 238 TNNHAAEKKKALENAGVKVFVTSGEKHINLYEMLDVLGQKGISSLLIEGGGEVNASFIEN 297

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----------NFMCVRRDY 345
           +L+D +ILY +  +IG    PS +E   + K          +F  V +DY
Sbjct: 298 KLMDKLILYVAPKIIGGRLAPSFVEGTGITKMQDAIEFKDISFTQVGKDY 347


>gi|183601038|ref|ZP_02962531.1| hypothetical protein PROSTU_04659 [Providencia stuartii ATCC 25827]
 gi|188019376|gb|EDU57416.1| hypothetical protein PROSTU_04659 [Providencia stuartii ATCC 25827]
          Length = 371

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/329 (38%), Positives = 181/329 (55%), Gaps = 15/329 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL  ++     TS NP+V C+IV+DG ++G G     G PHAEV AL  AGE+
Sbjct: 5   DRIYMARALELAQKGRFTTSPNPNVGCVIVRDGEIVGEGYHQKAGEPHAEVHALRMAGEK 64

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GATAYVTLEPCSH+GR+PPCA+ +I  G+RRVV  + DP+ +V+GRGL  LSQ GI  
Sbjct: 65  AKGATAYVTLEPCSHHGRTPPCAEALINAGVRRVVAAMQDPNPQVAGRGLYMLSQAGIET 124

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++  E +     +L R      ++ LK+A S D    +    S  IT   ++  V +
Sbjct: 125 ASGVLMEEAESLNRGFLKRMRTAFPYVQLKLAASLDGKTALESGESKWITSAAARQDVQV 184

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLSLDS 234
           LRAQ+ AIL    TVLAD+P LT R N L               P+RI+LD H +++ + 
Sbjct: 185 LRAQASAILSTSSTVLADNPSLTVRWNELPAEIHAVYPQSTLRQPIRIVLDNHNRVTAEY 244

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVE 293
           K+  T L     +V    +P      + + + I   D   DL  L+  L  R V S+ VE
Sbjct: 245 KV--TQLAGECWLVRSQPEPDAVWQGQVEQLAIPSDDNGIDLVILMMQLAKRNVNSIWVE 302

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGE 322
            G  +A S +   LVD +I+Y +  ++G+
Sbjct: 303 AGPILAGSLLKLGLVDELIVYIAPKLLGD 331


>gi|229174787|ref|ZP_04302310.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus MM3]
 gi|228608695|gb|EEK65994.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus MM3]
          Length = 379

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 120/324 (37%), Positives = 181/324 (55%), Gaps = 4/324 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VK+G ++G G     G  HAEV AL  AGE+
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKEGNIVGIGAHLRAGEEHAEVHALHMAGEK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +I+ G++RVV+   D +  VSG G + L + GI +
Sbjct: 72  AKGATVYVTLEPCSHFGKTPPCCELLIKKGVKRVVIATLDCNPLVSGTGKRRLEEAGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 ATGVLETEATLLNRFFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+    +H P+R+ILD H +    S +I   L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVILDTHLRTPPSSHVITDGLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +     ++  +NI I     +  ++K LL  L  + + SL VEGG  V  SF+
Sbjct: 251 IIVGKDVNKEKIASYESENIAIFQMKTKHIEIKDLLFFLGEKQILSLFVEGGQTVHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327
            ++ ++ I+ Y S  +IG    P+
Sbjct: 311 QTKHLNEIVTYISPKLIGGKDAPT 334


>gi|83955709|ref|ZP_00964289.1| riboflavin biosynthesis protein RibD [Sulfitobacter sp. NAS-14.1]
 gi|83840003|gb|EAP79179.1| riboflavin biosynthesis protein RibD [Sulfitobacter sp. NAS-14.1]
          Length = 367

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 130/356 (36%), Positives = 188/356 (52%), Gaps = 11/356 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           S DARFM+ AL   R   G    NP+V C+IV+ G ++GRG T  GG PHAE QAL +AG
Sbjct: 2   SDDARFMALALSLGRRGQGAVWPNPAVGCVIVQQGRIVGRGWTQPGGRPHAEPQALRQAG 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
             A+GAT YVTLEPC+H G++PPCA  ++     RVV+   D D RVSG+G+  L   GI
Sbjct: 62  PAAQGATVYVTLEPCAHTGKTPPCADALVAAKPARVVIACTDRDPRVSGKGIAILRAAGI 121

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
           IVD  ++E E +     +  R  E R  +TLK+A S D  I  A   S  IT   ++  V
Sbjct: 122 IVDVGVLEDEARADHLGFFLRVDEGRPMVTLKLANSFDGRIATASGESQWITAPPARRVV 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H +R++ DA++VG GT   DDP LT R  G     P RI++     + L+  + +TA   
Sbjct: 182 HAMRSRHDAVMVGGGTARQDDPSLTVRDLGTTRQ-PTRIVVSNGLDIPLNGALARTANDI 240

Query: 244 PVIIVTENDDPV-LALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298
           P+I+      P  L   +      +I C  +    D   +L  L   G+T +  EGG  +
Sbjct: 241 PLILCHGPKAPAELIGTWESLGATLISCAPKMGQIDADDMLQQLGRHGLTRIFCEGGGGL 300

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCVRRDYFGSDV 350
           A + + + LVD ++ + + + +G  G+P  +PL+   L +   F        G D+
Sbjct: 301 AATLLKADLVDQLVGFTAGLALGADGLPAIAPLQLQRLAQAPRFTLTETSRIGPDL 356


>gi|323705867|ref|ZP_08117439.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534863|gb|EGB24642.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 360

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 111/327 (33%), Positives = 187/327 (57%), Gaps = 7/327 (2%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           ++M  AL+ ++  VG T+ NP V  +I+KDG +IG G   Y G PHAE+ AL+ A E+  
Sbjct: 3   KYMKRALQLAKLGVGHTNPNPLVGAVIIKDGRIIGEGYHEYYGGPHAEINALKNAKEDVN 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GAT YVTLEPC H+G++PPC   +I+ GI+ V + ++DP+  V+GRG++ L + G+ +  
Sbjct: 63  GATLYVTLEPCCHHGKTPPCVDAVIKSGIKNVFIAMEDPNELVAGRGIKKLEEAGLNVYT 122

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            +++ E +     ++     +  ++ LK A++ D  I      S  IT   S+  VH +R
Sbjct: 123 GLLKDEAEKLNEVFIKYITSREPYVILKSAMTIDGKISTFTGDSKWITNEKSREYVHKVR 182

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
               AI+VGI TV+ D+P LT RL G +  +P+R+I+D H ++ LD+ +I       +I 
Sbjct: 183 GSVMAIMVGINTVIKDNPHLTVRLQGYK--NPLRVIVDSHGRIPLDANVIIDKSAKTLIA 240

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            T+        A +   ++++  + +D    L KL+  L  RG+ S+L+EGG  + +S +
Sbjct: 241 TTDMMPHDKVKALKDLGVDVVTIEKKDNKVHLNKLIYTLGERGIDSILIEGGGTLNYSAL 300

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLE 330
              +VD ++ Y +  +IG     +P+E
Sbjct: 301 KEGIVDKVMFYIAPKIIGGSNSLTPVE 327


>gi|293390135|ref|ZP_06634469.1| riboflavin biosynthesis protein RibD [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950669|gb|EFE00788.1| riboflavin biosynthesis protein RibD [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 374

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 127/333 (38%), Positives = 187/333 (56%), Gaps = 17/333 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D  FM  AL  ++     T+ NPSV C++VK+G ++G+G     G PHAEV AL EA
Sbjct: 6   SPQDVAFMQLALDLAKQGEFTTTPNPSVGCVLVKNGKIVGKGFHFKAGEPHAEVMALREA 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPC H+GR+PPCA+ + E G+ +V+  + DP+ +V+G+GLQ L+  G
Sbjct: 66  GENARGATAYVTLEPCFHFGRTPPCAKGLAEAGVSKVIAAMYDPNPQVAGKGLQILADAG 125

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I     ++E + +     +L R    +  + LK+A+S D    MA   S  ITG  ++  
Sbjct: 126 IQSAVGLLEEKAEQLNKGFLKRMRTGKPFVQLKLAMSIDGKTAMASGESKWITGAQARMD 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLS 231
           V   RA++ AIL    TVLADDP L  R   L         QE+   P+R+ILD   K+ 
Sbjct: 186 VQQYRAKASAILSTSQTVLADDPSLNVRWAELPNETQARYAQENLRQPVRVILDSTHKVR 245

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI--IYCDCRDLKKLLTILVGRGVTS 289
            D K+  T   APV +  E+D  +       + + +   + + R L+ L+T L  R + +
Sbjct: 246 SDFKVFLTD--APVWLAGEDDFQLTGFPASTEYLKLDRSHGESR-LQALMTELGKRQINT 302

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
           L VE GA +A + I   LVD +I+Y +  ++G+
Sbjct: 303 LWVEAGATLAGALIAENLVDELIIYMAPKLLGD 335


>gi|229019323|ref|ZP_04176149.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1273]
 gi|228742008|gb|EEL92182.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1273]
          Length = 379

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 118/324 (36%), Positives = 180/324 (55%), Gaps = 4/324 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++   G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE 
Sbjct: 12  DQEYMALALQLAQGTSGQTSPNPMVGAVVVKDGKIVGMGAHMCAGEEHAEVHALHMAGER 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L + GI +
Sbjct: 72  AKGATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPLVSGNGKRRLEETGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEATLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESQWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TVL D+P LT R+    +H P+R+ILD H +    S +I   L    
Sbjct: 192 YRHMHDAILVGVNTVLTDNPHLTTRIPNGGKH-PIRVILDTHLRTPPSSHVITDGLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +     ++   NI +     +  +++ +L++L  + + SL VEGG  V  +F+
Sbjct: 251 IIVGKDVNKEKIASYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFVEGGQTVHANFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327
            +   + I+ Y S  +IG    P+
Sbjct: 311 KTNSFNEIVTYISPKLIGGKDAPT 334


>gi|229093172|ref|ZP_04224290.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-42]
 gi|228690146|gb|EEL43940.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-42]
          Length = 379

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/325 (37%), Positives = 181/325 (55%), Gaps = 6/325 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 12  DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC   +I+ GI RVV+   D +  VSG G + L + GI +
Sbjct: 72  AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            R   DAILVG+ TV+AD+P LT R+ NG Q  +P+R+ILD H +    S +I  +L   
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDSLAPT 249

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            IIV  + +     ++  KNI I     +  +++ +L +L  + + SL VEGG  V  SF
Sbjct: 250 WIIVGTDVNQEKIASYESKNIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 309

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327
           + ++  + I+ Y S  +IG    P+
Sbjct: 310 LQTKYFNEIVTYISPKLIGGSKAPT 334


>gi|118479310|ref|YP_896461.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Bacillus thuringiensis str. Al Hakam]
 gi|229186356|ref|ZP_04313521.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BGSC 6E1]
 gi|118418535|gb|ABK86954.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Bacillus thuringiensis str. Al Hakam]
 gi|228597150|gb|EEK54805.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BGSC 6E1]
          Length = 379

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 122/325 (37%), Positives = 181/325 (55%), Gaps = 6/325 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC   +I+ GI RVV+   D +  VSG G + L + GI +
Sbjct: 72  AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            R   DAILVG+ TV+AD+P LT R+ NG Q  +P+R+ILD H +    S +I  +L   
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDSLAPT 249

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            IIV  + +     ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF
Sbjct: 250 WIIVGTDVNKEKIASYESENITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 309

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327
           + ++  + II Y S  +IG    P+
Sbjct: 310 LQTKYFNEIITYISPKLIGGSKAPT 334


>gi|52141386|ref|YP_085445.1| riboflavin biosynthesis protein [Bacillus cereus E33L]
 gi|51974855|gb|AAU16405.1| riboflavin biosynthesis protein [Bacillus cereus E33L]
          Length = 370

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 122/325 (37%), Positives = 180/325 (55%), Gaps = 6/325 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 3   DQEYMRIALQLAEGTCGQTSPNPMVGAIVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC   +I+ GI RVV+   D +  VSG G + L + GI +
Sbjct: 63  AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            R   DAILVG+ TV+AD+P LT R+ NG Q  +P+R+ILD H +    S +I   L   
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDGLAPT 240

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            IIV  + +     ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF
Sbjct: 241 WIIVGRDVNKEKIASYESENITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 300

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327
           + ++  + II Y S  +IG    P+
Sbjct: 301 LQTKYFNEIITYISPKLIGGSKAPT 325


>gi|325577912|ref|ZP_08148145.1| riboflavin biosynthesis protein RibD [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160342|gb|EGC72469.1| riboflavin biosynthesis protein RibD [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 376

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 124/331 (37%), Positives = 180/331 (54%), Gaps = 16/331 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D +FM  AL  +      T+ NPSV C++VK+G ++G+G     G PHAE  AL +A
Sbjct: 6   SPDDVKFMQLALELAAKGQYTTTPNPSVGCVLVKNGEIVGKGFHFKAGQPHAERMALADA 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE+A+GATAYVTLEPCSHYGR+PPCA  +IE G+ RVV  + DP+ +V+G+GL+ L+  G
Sbjct: 66  GEKAKGATAYVTLEPCSHYGRTPPCALGLIEAGVSRVVAAMADPNPQVAGKGLKMLADAG 125

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I     ++  + +     +L R    + ++ LK+A+S D    MA   S  ITG  ++  
Sbjct: 126 IPTAVNLLNEQAEALNKGFLKRMRTGKPYVQLKLAMSLDGRTAMASGESKWITGEAARAD 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLS 231
           V  +RA+S A+L    TVLADDP L  R N   +             P+R+ILD   ++ 
Sbjct: 186 VQKMRAKSTALLSTSATVLADDPSLNVRWNQFPDDLKTEYAEETVRQPIRVILDSKNRVQ 245

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
              ++  T   +PV +V     P     F      I+  +  D   L+T L  R V S+ 
Sbjct: 246 SSHQLFHTH--SPVWLV--GSIPRDMSVFPDFCEQILLSENYDFDMLMTELGKRQVNSVW 301

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
           VE GA +A S I    VD +I+Y S  ++G+
Sbjct: 302 VEAGANLAGSLIEQHAVDELIIYVSPKLLGD 332


>gi|304407004|ref|ZP_07388658.1| riboflavin biosynthesis protein RibD [Paenibacillus curdlanolyticus
           YK9]
 gi|304343991|gb|EFM09831.1| riboflavin biosynthesis protein RibD [Paenibacillus curdlanolyticus
           YK9]
          Length = 373

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 135/361 (37%), Positives = 196/361 (54%), Gaps = 20/361 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DA +M  AL+ ++   G TS NP V C+IVK+G +IG G     G  HAEV AL  AG+E
Sbjct: 7   DAFYMRLALQMAQGATGQTSINPVVGCVIVKEGRIIGMGAHLKRGEGHAEVNALRMAGDE 66

Query: 67  ARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           A GATAYVTLEPCSHY  ++PPC   +IE  I RVVV   DP+ +V+G G++ L   GI 
Sbjct: 67  AEGATAYVTLEPCSHYRKKTPPCCDRLIEARIARVVVAAQDPNPQVAGTGVEKLRAAGIA 126

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   ++  E       Y    + +   +TLK A + D  I      S  ITG  S+  VH
Sbjct: 127 VSVGLLAEESHAMNERYNKYILSRLPFVTLKTASTLDGRIAAKTGDSRWITGPASREAVH 186

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            +R Q D I+VGIGT+LADDP+LT RL     H P RII+D   ++ LD++++   +   
Sbjct: 187 TMRHQHDGIMVGIGTLLADDPQLTTRLEVPALH-PARIIVDSALRIPLDARVVTDGMART 245

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVA 299
           +++ T   +P    + +   + I+  DC D     L + + +L    + S+L+EGG  + 
Sbjct: 246 IVLTTTAANPEKRSSLQAAGVEIV--DCGDGPHVNLTEAMRLLGDMEIGSILLEGGGQLN 303

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLE---EGYLEK-----NFMCVRRDYFGSDVC 351
            + + + LVD I L+ +  +IG GG  SP     EG+ EK          R + +G D+ 
Sbjct: 304 GAMLAAGLVDKISLFFAPKLIG-GGEASPAAFVFEGF-EKMADAITLESTRYEQYGDDIA 361

Query: 352 L 352
           +
Sbjct: 362 V 362


>gi|77919046|ref|YP_356861.1| riboflavin biosynthesis protein RibD [Pelobacter carbinolicus DSM
           2380]
 gi|77545129|gb|ABA88691.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Pelobacter carbinolicus DSM 2380]
          Length = 371

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 133/355 (37%), Positives = 190/355 (53%), Gaps = 11/355 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  A+  +R   G T  NP+V  LIVKDG ++GRG     G PHAE+ AL EAG+ ARG
Sbjct: 8   FMRQAIDLARRGEGRTRPNPAVGALIVKDGEIVGRGFHPKAGQPHAEIYALREAGDRARG 67

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           A  YVTLEPCSH+GR+ PCA  IIE G+ RV V   DP+ +V+G G++ L   GI V   
Sbjct: 68  ADMYVTLEPCSHHGRTGPCADAIIEAGLARVYVGTLDPNPQVAGGGIRKLQGAGIEVHCG 127

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++E+  +  +  +    +  +  + LK A++ D     A   S  +T   S+++VH LR 
Sbjct: 128 VLENLCRRIIAPFAKHILTAKPFVVLKSAMTLDGKTATASGHSQWVTSAASRHEVHKLRD 187

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK-TALLAPVII 247
           + D I+VGIGTVL DDP+LT RL       P RI+LD   ++  D+ I+   +  A +I 
Sbjct: 188 RMDGIMVGIGTVLQDDPQLTTRLPDEGGRDPERIVLDSSLRIPEDAAILNLQSSAATLIA 247

Query: 248 VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            T         A R     ++         DL  L+T L  RG+ S+L+EGGA +  +F 
Sbjct: 248 TTARASKAKIEAIRAAGAEVLVLPESGGRVDLHALMTALGARGLQSILLEGGAELNGAFW 307

Query: 304 NSRLVDSIILY-RSQIVIGEGGIPSPLEEGYLEKNFMCVRRD----YFGSDVCLE 353
            + LVD ++++   +IV G+GG       G L      V  D    +FG D  +E
Sbjct: 308 RAGLVDRVMMFIAPKIVGGDGGKGVFKGPGVLTMTEATVLEDVRVTHFGDDTLIE 362


>gi|228973365|ref|ZP_04133953.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228786345|gb|EEM34336.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
          Length = 358

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 121/322 (37%), Positives = 181/322 (56%), Gaps = 8/322 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  ++   G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARGA
Sbjct: 1   MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPCSHYGR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  +
Sbjct: 61  TIYVTLEPCSHYGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            E E K     +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R +
Sbjct: 121 CEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRNE 180

Query: 190 SDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + AILVG  TV  D+P LT R+ NG    +P+RIILD   ++ +++ ++        I  
Sbjct: 181 NAAILVGANTVQKDNPSLTTRIPNG---RNPIRIILDSTLRIPMEANVVTDGEAPTWIFT 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           T N       A     + +         +L ++L +L  +GV+SLL+EGG  V  SFI +
Sbjct: 238 TSNHAAKKKKALENAGVKVFVTSGEKHINLHEILDVLGQKGVSSLLIEGGGEVNASFIEN 297

Query: 306 RLVDSIILYRSQIVIGEGGIPS 327
           +L++ +ILY +  +IG    PS
Sbjct: 298 KLMNKLILYVAPKIIGGRLAPS 319


>gi|190571227|ref|YP_001975585.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|190357499|emb|CAQ54935.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
          Length = 405

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 134/366 (36%), Positives = 190/366 (51%), Gaps = 48/366 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FMS AL+ +   +G  + NP+V C+IVK+G+VIG G T  GG PHAEV AL+ A + 
Sbjct: 3   DDYFMSIALKLAEKSLGSVAPNPAVGCIIVKNGMVIGEGYTGIGGRPHAEVVALQNAKDL 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
              AT YVTLEPC H+G + PC   II+ GI+RVV+   DPD RVSG G++ L + GI V
Sbjct: 63  THSATMYVTLEPCCHFGVTEPCTAEIIKSGIKRVVIAAIDPDSRVSGGGIKALKEAGIEV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           ++ +M+ E ++    + T +   R  I  KIA + D  I      S  IT   ++N VH 
Sbjct: 123 EQGIMQKEAEVLNVGFFTTKEFHRPFIACKIATTLDGKIATFTGDSKWITSEDTRNWVHE 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRA+ DAI++G  T++ DDP LTCRL GL++ SP+R+I+D   KL  +  I KTA     
Sbjct: 183 LRAKYDAIMIGSSTLINDDPLLTCRLPGLEDRSPIRLIIDSQGKLKEEHNIAKTADTLYN 242

Query: 246 IIVTENDDPVLALAF-------RKK----------------------------------- 263
             +++     L+++F       RKK                                   
Sbjct: 243 HDLSKEPTAYLSMSFQRVTLESRKKEEEWIPVSRTGMTGGSTWVITNNKVKKKIKNINYL 302

Query: 264 --NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
             N N     C  LK + + LV   G+T LLVEGG  +    +   L+D +I+ RS  ++
Sbjct: 303 VVNSNNAGKVC--LKDMASKLVSEIGITRLLVEGGGILITELLKHNLIDRLIICRSGKIL 360

Query: 321 GEGGIP 326
           G    P
Sbjct: 361 GNDATP 366


>gi|300813870|ref|ZP_07094175.1| riboflavin biosynthesis protein RibD [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300512057|gb|EFK39252.1| riboflavin biosynthesis protein RibD [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 372

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 122/332 (36%), Positives = 186/332 (56%), Gaps = 10/332 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
           +MS A+  +    G T TNP V C+IV D  +IGRG     G  HAE  A+E+A   GE 
Sbjct: 10  YMSLAMELAEKGKGFTLTNPMVGCVIVNDDRIIGRGYHKKFGDLHAETMAIEDAKKNGES 69

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             G+T YV LEPC HYG+ PPC + IIE  I++VV+   DP+ +VSG+G++ L   GI +
Sbjct: 70  LEGSTLYVNLEPCCHYGKQPPCTKAIIENKIKKVVIANVDPNKKVSGKGIKTLEDAGIEV 129

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V+ +ME EG      +      +R  +T+K A++ D  I      S  I+  IS++ VH 
Sbjct: 130 VEGIMEEEGLKLNEEFFHFIKTQRPFVTMKSAMTLDGKIASVTGDSKWISSQISRDYVHK 189

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRA+++AI+VGIGTVL DDP L  R+ G    +P +I++D   ++ LD+K++ ++    +
Sbjct: 190 LRAENNAIMVGIGTVLKDDPSLNVRIYG-NYKNPTKILVDSKLRIPLDAKLLSSSDAPTI 248

Query: 246 IIVTENDDPVLALAFRK-KNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300
           I  TE  D       ++  N++I+ C  +    DL  L + L    + S+L+EGG  + +
Sbjct: 249 IACTEGYDTEKYNKLKEMANVHILVCKKKDGRVDLLDLFSKLKDFDICSVLLEGGGNLNY 308

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
           S +   LVD +I +    +IG  G+     EG
Sbjct: 309 SMLRENLVDRLIFFIGPKIIGGSGLSPVAGEG 340


>gi|240124968|ref|ZP_04737854.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Neisseria gonorrhoeae SK-92-679]
 gi|268683551|ref|ZP_06150413.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae
           SK-92-679]
 gi|268623835|gb|EEZ56235.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae
           SK-92-679]
          Length = 369

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 123/327 (37%), Positives = 181/327 (55%), Gaps = 9/327 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  +   M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +A
Sbjct: 3   SDTNISMMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   G
Sbjct: 63  GEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  ++E++ +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  
Sbjct: 123 IKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V +LRA+S A+L GIGTVLAD+P L  R    L++  P RI+LD   +L  +S ++    
Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPNSHLVTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296
               I   E D+  L       +I I+      D + DL  L+ +L   G   ++VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +  +F+   L D I+LYRS  ++G G
Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGIG 327


>gi|71083736|ref|YP_266456.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|71062849|gb|AAZ21852.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 351

 Score =  206 bits (524), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 112/310 (36%), Positives = 172/310 (55%), Gaps = 7/310 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  ++   GLT  NPSV C+IVK+  ++  G T + G PHAE  A++ + E   G+
Sbjct: 1   MELALNLAKARHGLTGINPSVGCVIVKNNKILSIGQTGFKGTPHAEFNAIKNSHENIEGS 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
             YVTLEPCSHYG++PPC   II+  I+ VV  V+D D +V G+ L  L  K I+V + +
Sbjct: 61  KMYVTLEPCSHYGKTPPCTNIIIKNKIKEVVYGVEDIDKKVKGKTLNILKSKNILVKKDL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           ++ +   F   Y   + +   ++T KIA+S++N+I      +  I+   +    H LR +
Sbjct: 121 LKKQINKFYAPYFFNRKKNLPYVTGKIAISKNNLI--YSKDTKRISDIHTDRFTHFLRYK 178

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           +D++++   T+  DDP+L CRL GL + SP RIILD + ++  +S I KTA     II  
Sbjct: 179 NDSLMISSKTLNKDDPKLNCRLEGLSKFSPKRIILDRNLEIKKNSYIFKTANKDNTIIFY 238

Query: 250 ENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
            N    + L  +KK I +I      +  D+K +L  L   G  +LLVEGG  ++   I  
Sbjct: 239 YNAKAEVKLMLKKKGITLIKSKLNKNSFDIKSILMKLYVLGCRNLLVEGGNDLSKHIIKK 298

Query: 306 RLVDSIILYR 315
           +L +   LY+
Sbjct: 299 KLFNEFYLYK 308


>gi|229123633|ref|ZP_04252828.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus 95/8201]
 gi|228659768|gb|EEL15413.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus 95/8201]
          Length = 379

 Score =  206 bits (524), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 121/325 (37%), Positives = 181/325 (55%), Gaps = 6/325 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 12  DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC   +I+ GI RVV+   D +  VSG G + L + GI +
Sbjct: 72  AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            R   DAILVG+ TV+AD+P LT R+ NG Q  +P+R+ILD H +    S +I  +L   
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDSLAPT 249

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            IIV  + +     ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF
Sbjct: 250 WIIVGTDVNQEKIASYESENITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 309

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327
           + ++  + I+ Y S  +IG    P+
Sbjct: 310 LQTKYFNEIVTYISPKLIGGSKAPT 334


>gi|238023203|ref|ZP_04603629.1| hypothetical protein GCWU000324_03130 [Kingella oralis ATCC 51147]
 gi|237865586|gb|EEP66726.1| hypothetical protein GCWU000324_03130 [Kingella oralis ATCC 51147]
          Length = 359

 Score =  206 bits (524), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 126/356 (35%), Positives = 191/356 (53%), Gaps = 14/356 (3%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P +  D + M  AL  +      TS NP V C+I     ++G+G     G PHAEV AL 
Sbjct: 3   PFTHQDTQHMQLALALAWQGRFSTSPNPRVGCVIAHGSQIVGQGYHVQAGAPHAEVHALA 62

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +AG  ARGATAYVTLEPC+H+GR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L Q
Sbjct: 63  QAGALARGATAYVTLEPCAHHGRTPPCAEALVRAGVSRVVAAMQDPNPLVAGKGLAILRQ 122

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            G      + E+E +     +L+R   +R  + LKIA S D    +A   S  ITG  ++
Sbjct: 123 AGTQTASGLCEAEARALNRGFLSRIERQRPFVKLKIAASLDGKTALANGASQWITGEAAR 182

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             V + RA+S A+L GIGT+LAD+P+L  R+  +++  P+RI+LD   +    S+II+  
Sbjct: 183 ADVQIQRAESCAVLTGIGTILADNPQLNVRIPTIRQ--PLRIVLDRQLRTPARSRIIQDG 240

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVEGGAAVA 299
                +I T++     A      N++I      DL  LL  L     +  L+VE G+ +A
Sbjct: 241 --GETLICTQSPANPFA---DYPNVHIYRQPENDLSSLLAHLAREHQIGELMVEAGSTLA 295

Query: 300 HSFINSRLVDSIILYRSQIVIGE---GGIPSPLEEGYLEK--NFMCVRRDYFGSDV 350
            +FI + L D I+ Y++  ++G+   G    P  E  L +   +  V  +  G D+
Sbjct: 296 TAFIQADLADEIVYYQAPKILGDSARGLFRLPENENTLTRPSKWQTVSVEALGDDI 351


>gi|325143820|gb|EGC66136.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
           M01-240013]
          Length = 370

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 122/324 (37%), Positives = 177/324 (54%), Gaps = 9/324 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +A
Sbjct: 3   SDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALHQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   G
Sbjct: 63  GEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEVAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  
Sbjct: 123 IKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDTRAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V +LRA+S A+L GIGTVLAD+P L  R    L++  P RI+LD   +L LDS ++    
Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296
               I   E ++  L       +I I+          DL  L+ +L   G   ++VE G+
Sbjct: 241 SPTYIATLERNEDRLHPYREHAHIRILMPSETAGGKIDLHHLMRLLADEGFGEIMVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVI 320
            +  +F+   L D I+LYRS  ++
Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKIL 324


>gi|229198234|ref|ZP_04324942.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus m1293]
 gi|228585253|gb|EEK43363.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus m1293]
          Length = 373

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 119/325 (36%), Positives = 182/325 (56%), Gaps = 6/325 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 6   DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +I+  ++RVV+   D +  VSG G + L + GI +
Sbjct: 66  AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKKRLEEAGIEV 125

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  IT   ++  VH 
Sbjct: 126 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITSEDARADVHQ 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            R   DAILVG+ TV+AD+P LT R+ NG Q  +P+R+ILD H +    S +I   L   
Sbjct: 186 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDGLAPT 243

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            IIV ++ +P    ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF
Sbjct: 244 WIIVGKDVNPEKIASYESENIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 303

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327
           + ++  + I+ Y S  +IG    P+
Sbjct: 304 LQTKYFNEIVTYISPKLIGGKNAPT 328


>gi|117919545|ref|YP_868737.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Shewanella sp. ANA-3]
 gi|117611877|gb|ABK47331.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Shewanella sp. ANA-3]
          Length = 381

 Score =  206 bits (523), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 130/339 (38%), Positives = 189/339 (55%), Gaps = 18/339 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S  D + MS A++ +R     T  NPSV C+IVKD  ++G G     G PHAEV AL
Sbjct: 1   MNWSELDNQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE ARGATAYVTLEPCSHYGR+PPCA  +I  G++RVVV V+DP+ +V GRG+Q L 
Sbjct: 61  RMAGELARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLR 120

Query: 121 QKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI VD  +  +    L+  ++ R       +T+K+A S D    ++   S  ITG  +
Sbjct: 121 DAGIEVDVGLHRDEAYALNLGFMKRMESGLPWVTVKLAASLDGKTALSNGVSKWITGPEA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFK 229
           +  V  LR ++ A++ GI TVLAD P L  R + L          Q   P+R+ILD   +
Sbjct: 181 RRDVQRLRLRACALVTGIETVLADAPSLNVRYSELGSLNLQLSEAQILQPLRVILDSRCR 240

Query: 230 LSLDSKIIKTALLAPVIIV-TENDDPVL--ALAFRKKNINIIYCDCR-DLKKLLTILVGR 285
           + + + ++  A+ +P+++V TE   P     L      + +   D R  L  LL+ L G+
Sbjct: 241 MPITAALL--AIESPILLVSTEPYSPAFMAQLPAHVTCLQLPAIDGRISLPALLSYL-GK 297

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
               +L+E GA +A +FI   L D ++LY++  ++G  G
Sbjct: 298 SCNQVLIEAGATLAGAFIGDGLADELVLYQAMKILGAQG 336


>gi|229592849|ref|YP_002874968.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens
           SBW25]
 gi|229364715|emb|CAY52681.1| riboflavin biosynthesis protein RibD [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase]
           [Pseudomonas fluorescens SBW25]
          Length = 369

 Score =  206 bits (523), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 125/338 (36%), Positives = 182/338 (53%), Gaps = 26/338 (7%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            DA +M+ AL  +R  +  T  NP V C+IV+DG V+G G     G PHAEV AL  AG+
Sbjct: 2   LDAHYMARALELARKGLYTTHPNPRVGCVIVRDGQVVGEGWHVRTGEPHAEVHALRAAGD 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +ARGATAYVTLEPCSHYG +PPCA  ++  G+ RVV  + DP+  V+GRG+Q L+Q GI 
Sbjct: 62  KARGATAYVTLEPCSHYGHTPPCADALVSAGLARVVAAMQDPNPEVAGRGMQRLAQAGID 121

Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   ++ESE +     +L R  +    + +K+A+S D    MA   S  ITG  ++  V 
Sbjct: 122 VRSGVLESEARALNRGFLKRMEQGLPFVRVKLAMSLDGRTAMASGESQWITGPAARAAVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHS--------PMRIILDPHFKLSLDS 234
            LRA++  +L G  TVLAD   LT R    GL + +        P+R+++D   ++ L++
Sbjct: 182 RLRAEASVVLTGADTVLADGARLTVRAAELGLDDATTALAMSRPPLRVLIDGRLRVPLNA 241

Query: 235 KIIKTALLAPVIIVT----ENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVT 288
              K     P +++T    EN  P      R     ++       DL+  L  L  RGV 
Sbjct: 242 PFFKA---GPALVITCVTAENQFP------RGPECLVVPGVEGQVDLRSALVALAARGVN 292

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            +LVE G ++A +F    LVD  +++ +   +G    P
Sbjct: 293 DVLVEAGPSLAGAFAQQGLVDEYVIFVAGKFLGSAARP 330


>gi|145638234|ref|ZP_01793844.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae PittII]
 gi|145272563|gb|EDK12470.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae PittII]
 gi|309751389|gb|ADO81373.1| Riboflavin biosynthesis protein RibD [Haemophilus influenzae R2866]
          Length = 372

 Score =  206 bits (523), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 124/333 (37%), Positives = 185/333 (55%), Gaps = 16/333 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           SS D  FM  AL  +      T+ NPSV C++VK+G ++G G     G PHAE  AL +A
Sbjct: 5   SSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATAYVTLEPCSHYGR+PPCA  +IE G+ +V+  + DP+ +V+G+GL+ LS  G
Sbjct: 65  GENAKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAG 124

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I     ++  + +     +L R  +    + LK+A+S D    MA   S  ITG  +++ 
Sbjct: 125 IESAANLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGSDARSD 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231
           V  +RA+S A+L    TVL DDP L  R +   E+            P+R+ILD   ++ 
Sbjct: 185 VQKMRAKSSALLSTSATVLTDDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHRIQ 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
              K+  T   +PV +V+  ++P     F      II      LK+L+  L  R + +L 
Sbjct: 245 PTHKLFLTH--SPVWLVS--NEPRDLTGFPDFCEQIILPKENLLKELMQELGRRQINTLW 300

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           VE GA +A S I+++LVD +I+Y +  ++G+  
Sbjct: 301 VEAGANLAGSLIDAKLVDELIIYVAPKLLGDNA 333


>gi|282883344|ref|ZP_06291938.1| riboflavin biosynthesis protein RibD [Peptoniphilus lacrimalis
           315-B]
 gi|281296848|gb|EFA89350.1| riboflavin biosynthesis protein RibD [Peptoniphilus lacrimalis
           315-B]
          Length = 372

 Score =  206 bits (523), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 122/332 (36%), Positives = 186/332 (56%), Gaps = 10/332 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
           +MS A+  +    G T TNP V C+IV D  +IGRG     G  HAE  A+E+A   GE 
Sbjct: 10  YMSLAMDLAEKGKGFTLTNPMVGCVIVNDDRIIGRGYHKKFGDLHAETMAIEDAQKNGES 69

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             G+T YV LEPC HYG+ PPC + IIE  I++VV+   DP+ +VSG+G++ L   GI +
Sbjct: 70  LEGSTLYVNLEPCCHYGKQPPCTKAIIENKIKKVVIANVDPNKKVSGKGIKTLEDAGIEV 129

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V+ +ME EG      +      +R  +T+K A++ D  I      S  I+  IS++ VH 
Sbjct: 130 VEGIMEEEGLKLNEEFFHFIKTQRPFVTMKSAMTLDGKIASVTGDSKWISSQISRDYVHK 189

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRA+++AI+VGIGTVL DDP L  R+ G    +P +I++D   ++ LD+K++ ++    +
Sbjct: 190 LRAENNAIMVGIGTVLKDDPSLNVRIYG-NYKNPTKILVDSKLRIPLDAKLLSSSDAPTI 248

Query: 246 IIVTENDDPVLALAFRK-KNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300
           I  TE  D       ++  N++I+ C  +    DL  L + L    + S+L+EGG  + +
Sbjct: 249 IACTEGYDTEKYNKLKEMANVHILLCKKKDGRVDLLDLFSKLKDFDICSVLLEGGGNLNY 308

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
           S +   LVD +I +    +IG  G+     EG
Sbjct: 309 SMLRENLVDRLIFFIGPKIIGGSGLSPVAGEG 340


>gi|228929160|ref|ZP_04092187.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228947830|ref|ZP_04110117.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228811817|gb|EEM58151.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228830450|gb|EEM76060.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 379

 Score =  206 bits (523), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 120/325 (36%), Positives = 182/325 (56%), Gaps = 6/325 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 12  DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +I+  ++RVV+   D +  VSG G + L + GI +
Sbjct: 72  AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            R   DAILVG+ TV+AD+P LT R+ NG Q  +P+R+ILD H +    S +I  +L   
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDSLAPT 249

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            IIV  + +     ++  KNI I     +  +++ +L +L  + + SL VEGG  V  SF
Sbjct: 250 WIIVGTDVNQEKIASYESKNIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 309

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327
           + ++  + I+ Y S  +IG    P+
Sbjct: 310 LQTKYFNEIVTYISPKLIGGSKAPT 334


>gi|52142146|ref|YP_084683.1| riboflavin biosynthesis protein;
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Bacillus cereus E33L]
 gi|51975615|gb|AAU17165.1| riboflavin biosynthesis protein;
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Bacillus cereus E33L]
          Length = 367

 Score =  206 bits (523), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 127/351 (36%), Positives = 191/351 (54%), Gaps = 18/351 (5%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL  ++   G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+A G
Sbjct: 7   YMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQACG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
            T YVTLEPCSH+GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  
Sbjct: 67  GTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVG 126

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + E E K     +    + KR  IT+K  V+ D  I  +   S  IT   ++ +VH +R 
Sbjct: 127 VCEEESKKMNEVFNKYILTKRPFITIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRN 186

Query: 189 QSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           ++ AILVG  TV  D+P LT R+ NG    +P+R+ILD   ++ +++ ++        I 
Sbjct: 187 ENAAILVGANTVQKDNPSLTTRIPNG---RNPIRVILDSTLRIPMEANVVTDGEAPTWIF 243

Query: 248 VTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
            T N       A     + I         +L ++L +L G+GV+SLL+EGG  V  SFI 
Sbjct: 244 TTSNHAAEKKKALENAGVKIFVTSGEKHINLYEMLDVLGGKGVSSLLIEGGGEVNASFIE 303

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----------NFMCVRRDY 345
           ++L+D +ILY +  +IG    PS +E   + K          +F  V +DY
Sbjct: 304 NKLIDKLILYIAPKMIGGRMAPSFVEGAGITKMQDAIEFKDISFTQVGKDY 354


>gi|228916750|ref|ZP_04080315.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228842937|gb|EEM88020.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 379

 Score =  206 bits (523), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 121/325 (37%), Positives = 181/325 (55%), Gaps = 6/325 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 12  DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC   +I+ GI RVV+   D +  VSG G + L + GI +
Sbjct: 72  AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            R   DAILVG+ TV+AD+P LT R+ NG Q  +P+R+ILD H +    S +I  +L   
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDSLAPT 249

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            I+V  + +     ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF
Sbjct: 250 WIMVGRDVNKEKIASYESENITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 309

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327
           + ++  + II Y S  +IG    P+
Sbjct: 310 LQAKYFNEIITYISPKLIGGSKAPT 334


>gi|49480339|ref|YP_038170.1| riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49331895|gb|AAT62541.1| riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 370

 Score =  206 bits (523), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 120/325 (36%), Positives = 181/325 (55%), Gaps = 6/325 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 3   DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC   +I+ GI RVV+   D +  VSG G + L + GI +
Sbjct: 63  AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            R   DAILVG+ TV+AD+P LT R+ NG Q  +P+R+ILD H +    S +I  +L   
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDSLAPT 240

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            I+V  + +     ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF
Sbjct: 241 WIMVGRDVNKEKIASYESENITIFQMKTKQIEIQDILDLLGEKQILSLFVEGGQTVHASF 300

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327
           + ++  + I+ Y S  +IG    P+
Sbjct: 301 LQTKYFNEIVTYISPKLIGGSKAPT 325


>gi|260581778|ref|ZP_05849575.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae NT127]
 gi|260095371|gb|EEW79262.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae NT127]
          Length = 372

 Score =  206 bits (523), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 124/333 (37%), Positives = 186/333 (55%), Gaps = 16/333 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           SS D  FM  AL  +      T+ NPSV C++VK+G ++G G     G PHAE  AL +A
Sbjct: 5   SSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ++GATAYVTLEPCSHYGR+PPCA  +IE G+ +V+  + DP+ +V+G+GL+ LS  G
Sbjct: 65  GENSKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAG 124

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I     ++  + +     +L R  +    + LK+A+S D    MA   S  ITG  +++ 
Sbjct: 125 IESAVNLLSDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGSDARSD 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231
           V  +RA+S A+L    TVLADDP L  R +   E+            P+R+ILD   ++ 
Sbjct: 185 VQKMRAKSSALLSTSATVLADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHRIQ 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
              K+  T   +PV +V+  ++P     F      II      LK+L+  L  R + +L 
Sbjct: 245 PTHKLFLT--YSPVWLVS--NEPRDLTGFPDFCEQIILPKENLLKELMQELGRRQINTLW 300

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           VE GA +A S I+++LVD +I+Y +  ++G+  
Sbjct: 301 VEAGANLAGSLIDAKLVDELIIYVAPKLLGDNA 333


>gi|30264187|ref|NP_846564.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. Ames]
 gi|47529628|ref|YP_020977.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187016|ref|YP_030268.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           Sterne]
 gi|165871134|ref|ZP_02215784.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           A0488]
 gi|167633706|ref|ZP_02392030.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           A0442]
 gi|167639402|ref|ZP_02397673.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           A0193]
 gi|170687109|ref|ZP_02878327.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           A0465]
 gi|170705665|ref|ZP_02896128.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           A0389]
 gi|177652658|ref|ZP_02935074.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           A0174]
 gi|190566211|ref|ZP_03019130.1| riboflavin biosynthesis protein RibD [Bacillus anthracis
           Tsiankovskii-I]
 gi|196035025|ref|ZP_03102432.1| riboflavin biosynthesis protein RibD [Bacillus cereus W]
 gi|218905249|ref|YP_002453083.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH820]
 gi|227816888|ref|YP_002816897.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. CDC
           684]
 gi|229603428|ref|YP_002868410.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           A0248]
 gi|254683878|ref|ZP_05147738.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721713|ref|ZP_05183502.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           A1055]
 gi|254736225|ref|ZP_05193931.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           Western North America USA6153]
 gi|254744115|ref|ZP_05201798.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           Kruger B]
 gi|254754105|ref|ZP_05206140.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           Vollum]
 gi|254758204|ref|ZP_05210231.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           Australia 94]
 gi|30258832|gb|AAP28050.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. Ames]
 gi|47504776|gb|AAT33452.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49180943|gb|AAT56319.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           Sterne]
 gi|164713053|gb|EDR18580.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           A0488]
 gi|167512461|gb|EDR87836.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           A0193]
 gi|167531112|gb|EDR93799.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           A0442]
 gi|170129205|gb|EDS98069.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           A0389]
 gi|170668726|gb|EDT19471.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           A0465]
 gi|172081993|gb|EDT67061.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           A0174]
 gi|190563130|gb|EDV17096.1| riboflavin biosynthesis protein RibD [Bacillus anthracis
           Tsiankovskii-I]
 gi|195992564|gb|EDX56525.1| riboflavin biosynthesis protein RibD [Bacillus cereus W]
 gi|218537200|gb|ACK89598.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH820]
 gi|227005412|gb|ACP15155.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. CDC
           684]
 gi|229267836|gb|ACQ49473.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           A0248]
          Length = 370

 Score =  206 bits (523), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 120/325 (36%), Positives = 182/325 (56%), Gaps = 6/325 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 3   DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +I+  ++RVV+   D +  VSG G + L + GI +
Sbjct: 63  AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            R   DAILVG+ TV+AD+P LT R+ NG Q  +P+R+ILD H +    S +I  +L   
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDSLAPT 240

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            IIV  + +     ++  KNI I     +  +++ +L +L  + + SL VEGG  V  SF
Sbjct: 241 WIIVGTDVNQEKIASYESKNIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 300

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327
           + ++  + I+ Y S  +IG    P+
Sbjct: 301 LQTKYFNEIVTYISPKLIGGSKAPT 325


>gi|228922861|ref|ZP_04086159.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228836916|gb|EEM82259.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 379

 Score =  206 bits (523), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 118/324 (36%), Positives = 180/324 (55%), Gaps = 4/324 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AG+ 
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 72  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D  I      S  ITG  ++  VH 
Sbjct: 132 TTGILEAEALLLNRYFFHYMKTKRPFVTIKTAMSLDGKIATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+    +H P+R++LD H +    S +I   L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVVLDTHLRTPPSSHVITDGLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 251 IIVGKDVKKAKISSYESKNIAIFQMETKYIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327
            +   + I+ Y S  +IG    P+
Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPT 334


>gi|115377134|ref|ZP_01464348.1| riboflavin biosynthesis protein RibD [Stigmatella aurantiaca
           DW4/3-1]
 gi|310822848|ref|YP_003955206.1| Riboflavin biosynthesis protein RibD [Stigmatella aurantiaca
           DW4/3-1]
 gi|115365843|gb|EAU64864.1| riboflavin biosynthesis protein RibD [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395920|gb|ADO73379.1| Riboflavin biosynthesis protein RibD [Stigmatella aurantiaca
           DW4/3-1]
          Length = 387

 Score =  206 bits (523), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 126/360 (35%), Positives = 191/360 (53%), Gaps = 13/360 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  AL  +   +G TS NP+V  ++VK G +I RG     G  HAEV ALE AG  ARG
Sbjct: 31  FMRIALEEAAKGLGRTSPNPAVGAVLVKGGRIIARGYHKKAGTAHAEVVALEAAGPRARG 90

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           A  Y TLEPC HYGR+ PC+Q II+ G+RRV+    DP+ +V+G+G+  L + G+ ++  
Sbjct: 91  ADLYTTLEPCDHYGRTGPCSQAIIDAGVRRVICGSSDPNPKVNGKGVARLKKAGVEVLTG 150

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +++ +       +         ++TLK AV+ D  +  A   S  +TG  +++ VH LR 
Sbjct: 151 VLQKDADQLNQPFFKVMTTGLPYVTLKAAVTLDGKLATATGDSRWVTGEAARHWVHQLRD 210

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + D ILVG  TV  D+P+LT RL G     P+R+++D H +L     +      A VI+ 
Sbjct: 211 KVDVILVGANTVRRDNPQLTTRLPGGGGKDPVRVVVDSHLRLKSTHTVFTQRSPARVILA 270

Query: 249 T-ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR----GVTSLLVEGGAAVAHSFI 303
           T E+     A  F +  + +     R  +  L  L+GR    G   +LVEGGA +  SF+
Sbjct: 271 TLEDPQGAKARRFTRLGVEVWQMPSRQGQVALKALLGRVAQEGFNHVLVEGGAEIYGSFL 330

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEG-YLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362
             RL DS+ L+ +  +IG  G+    + G  L  N   ++      D+  + +G++L LQ
Sbjct: 331 RERLADSLALFLAPKLIGSQGLSWSGDLGVKLMANAFSLK------DLTFQQLGEDLLLQ 384


>gi|65321502|ref|ZP_00394461.1| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Bacillus
           anthracis str. A2012]
          Length = 370

 Score =  206 bits (523), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 120/325 (36%), Positives = 182/325 (56%), Gaps = 6/325 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 3   DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +I+  ++RVV+   D +  VSG G + L + GI +
Sbjct: 63  AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            R   DAILVG+ TV+AD+P LT R+ NG Q  +P+R+ILD H +    S +I  +L   
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDSLAPT 240

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            IIV  + +     ++  KNI I     +  +++ +L +L  + + SL VEGG  V  SF
Sbjct: 241 WIIVGTDVNQEKIASYESKNIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 300

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327
           + ++  + I+ Y S  +IG    P+
Sbjct: 301 LQTKYFNEIVTYISPKLIGGSKAPT 325


>gi|22124907|ref|NP_668330.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia pestis KIM 10]
 gi|45440597|ref|NP_992136.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia pestis biovar Microtus str. 91001]
 gi|51595284|ref|YP_069475.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia pseudotuberculosis IP 32953]
 gi|108808668|ref|YP_652584.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia pestis Antiqua]
 gi|108811070|ref|YP_646837.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia pestis Nepal516]
 gi|145600077|ref|YP_001164153.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia pestis Pestoides F]
 gi|149364971|ref|ZP_01887006.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia pestis CA88-4125]
 gi|162418167|ref|YP_001607523.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia pestis Angola]
 gi|165926574|ref|ZP_02222406.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165935961|ref|ZP_02224531.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011096|ref|ZP_02231994.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213091|ref|ZP_02239126.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398606|ref|ZP_02304130.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421644|ref|ZP_02313397.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423702|ref|ZP_02315455.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167470057|ref|ZP_02334761.1| riboflavin biosynthesis protein RibD [Yersinia pestis FV-1]
 gi|170025475|ref|YP_001721980.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia pseudotuberculosis YPIII]
 gi|186894301|ref|YP_001871413.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia pseudotuberculosis PB1/+]
 gi|218930213|ref|YP_002348088.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia pestis CO92]
 gi|229838788|ref|ZP_04458947.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229896058|ref|ZP_04511228.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Yersinia pestis Pestoides A]
 gi|229899356|ref|ZP_04514499.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229901297|ref|ZP_04516419.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Yersinia pestis Nepal516]
 gi|270489486|ref|ZP_06206560.1| riboflavin biosynthesis protein RibD [Yersinia pestis KIM D27]
 gi|294504911|ref|YP_003568973.1| riboflavin biosynthesis protein RibD (includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase)
           [Yersinia pestis Z176003]
 gi|21957743|gb|AAM84581.1|AE013703_11 bifunctional pyrimidine deaminase/reductase [Yersinia pestis KIM
           10]
 gi|45435454|gb|AAS61013.1| riboflavin biosynthesis protein RibD [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Yersinia pestis biovar Microtus str. 91001]
 gi|51588566|emb|CAH20174.1| bifunctional pyrimidine deaminase/reductase in pathway of
           riboflavin synthesis [Yersinia pseudotuberculosis IP
           32953]
 gi|108774718|gb|ABG17237.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Yersinia pestis Nepal516]
 gi|108780581|gb|ABG14639.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Yersinia pestis Antiqua]
 gi|115348824|emb|CAL21778.1| riboflavin biosynthesis protein RibD [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Yersinia pestis CO92]
 gi|145211773|gb|ABP41180.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Yersinia pestis Pestoides F]
 gi|149291384|gb|EDM41458.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia pestis CA88-4125]
 gi|162350982|gb|ABX84930.1| riboflavin biosynthesis protein RibD [Yersinia pestis Angola]
 gi|165916106|gb|EDR34713.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921502|gb|EDR38699.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990096|gb|EDR42397.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205878|gb|EDR50358.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960563|gb|EDR56584.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051110|gb|EDR62518.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167057872|gb|EDR67618.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752009|gb|ACA69527.1| riboflavin biosynthesis protein RibD [Yersinia pseudotuberculosis
           YPIII]
 gi|186697327|gb|ACC87956.1| riboflavin biosynthesis protein RibD [Yersinia pseudotuberculosis
           PB1/+]
 gi|229681226|gb|EEO77320.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Yersinia pestis Nepal516]
 gi|229687758|gb|EEO79831.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229695154|gb|EEO85201.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229700981|gb|EEO89010.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Yersinia pestis Pestoides A]
 gi|262362977|gb|ACY59698.1| riboflavin biosynthesis protein RibD (includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase)
           [Yersinia pestis D106004]
 gi|262366897|gb|ACY63454.1| riboflavin biosynthesis protein RibD (includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase)
           [Yersinia pestis D182038]
 gi|270337990|gb|EFA48767.1| riboflavin biosynthesis protein RibD [Yersinia pestis KIM D27]
 gi|294355370|gb|ADE65711.1| riboflavin biosynthesis protein RibD (includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase)
           [Yersinia pestis Z176003]
          Length = 369

 Score =  206 bits (523), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 127/331 (38%), Positives = 178/331 (53%), Gaps = 22/331 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     TS NP+V C++V+DG ++G G     G PHAEV AL  AGE+
Sbjct: 4   DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSHYGR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q GI V
Sbjct: 64  ARGATAYVTLEPCSHYGRTPPCADALVAAGVIRVVAAMQDPNPEVAGRGLYKLKQAGIAV 123

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
            RA+S AIL    TVLADDP LT R   L   +           P++IILD H +++   
Sbjct: 184 FRAESSAILSTSATVLADDPSLTVRWQDLDAETQVLYPHDSVRQPVKIILDSHNRVTPRH 243

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSL 290
           K+I+      +  V  +D P         NI  +    Y +  DL  L+  L  R + S+
Sbjct: 244 KVIQQDGPCWLARVDADDQPW------PGNIEQLLLPRYGNGVDLVVLMMQLGKRNINSV 297

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            VE G  +A + + + +VD +ILY +  ++G
Sbjct: 298 WVEAGPQLAGALLQAGVVDELILYIAPKLLG 328


>gi|146308871|ref|YP_001189336.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Pseudomonas mendocina ymp]
 gi|145577072|gb|ABP86604.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas
           mendocina ymp]
          Length = 371

 Score =  206 bits (523), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 129/341 (37%), Positives = 183/341 (53%), Gaps = 23/341 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S  D  FM+ ALR +R  +  T  NP V C+IV+DG ++G G  A  G PHAEV AL +
Sbjct: 1   MSERDHLFMARALRLARKGLYSTHPNPRVGCVIVRDGEIVGEGWHARAGEPHAEVHALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+ +V+GRGL  L+  
Sbjct: 61  AGERARGATAYVTLEPCSHHGRTPPCADALVAAGVGRVVAAMQDPNPQVAGRGLLRLANA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI ++  ++E+E +     ++ R       + +K A+S D    MA   S  ITG  ++ 
Sbjct: 121 GIEVLSGVLEAEARALNVGFIKRMESGLPFVRVKSAMSLDGRTAMASGESQWITGPAARA 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
           +V  LRAQS  +L G  TVLADD  LT R + L              P+R+++D   ++ 
Sbjct: 181 EVQRLRAQSSVVLSGADTVLADDARLTVRPDELGLGAEATFMAASRPPLRVLIDGRLRVP 240

Query: 232 LDSKIIKTA-LLAPVIIVTENDDPVLA-----LAFRKKNINIIYCDCRDLKKLLTILVGR 285
           L     +    L          D  LA     LA    N ++      DL+KLL  L GR
Sbjct: 241 LSKAFFQVGPALVATCAAAAARDRYLADDHELLAVPGSNGHV------DLRKLLQELAGR 294

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           GV  +LVE G  +A +F  + LVD   ++ +  ++G    P
Sbjct: 295 GVNEVLVEAGPRLAGAFARAGLVDEYRIFVAPKLLGSSARP 335


>gi|153947163|ref|YP_001402077.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia pseudotuberculosis IP 31758]
 gi|152958658|gb|ABS46119.1| riboflavin biosynthesis protein RibD [Yersinia pseudotuberculosis
           IP 31758]
          Length = 369

 Score =  205 bits (522), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 127/331 (38%), Positives = 178/331 (53%), Gaps = 22/331 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     TS NP+V C++V+DG ++G G     G PHAEV AL  AGE+
Sbjct: 4   DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSHYGR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q GI V
Sbjct: 64  ARGATAYVTLEPCSHYGRTPPCADALVAAGVIRVVAAMQDPNPEVAGRGLYKLKQAGIAV 123

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
            RA+S AIL    TVLADDP LT R   L   +           P++IILD H +++   
Sbjct: 184 FRAESSAILSTSATVLADDPSLTVRWQDLDTETQVLYPHNSIRQPVKIILDSHNRVTPRH 243

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSL 290
           K+I+      +  V  +D P         NI  +    Y +  DL  L+  L  R + S+
Sbjct: 244 KVIQQDGPCWLARVDADDQPW------PGNIEQLLLPRYGNGVDLVVLMMQLGKRNINSV 297

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            VE G  +A + + + +VD +ILY +  ++G
Sbjct: 298 WVEAGPQLAGALLQAGVVDELILYIAPKLLG 328


>gi|237797512|ref|ZP_04585973.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331020362|gb|EGI00419.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 381

 Score =  205 bits (522), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 129/345 (37%), Positives = 182/345 (52%), Gaps = 33/345 (9%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D  +M+ AL  +R  +  T  NP V C+IV+DG ++G G  A  G PHAEV AL +A
Sbjct: 9   AALDVHYMAHALELARKGLYSTHPNPRVGCVIVRDGQIVGEGWHARAGEPHAEVHALRQA 68

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPCSH GR+PPCA  ++E G+ RVV  + DP+  VSGRGL  L   G
Sbjct: 69  GELARGATAYVTLEPCSHQGRTPPCADALVEAGLSRVVAAMQDPNPEVSGRGLLRLMNAG 128

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++E+E +     +L R    R +I +K+A+S D    MA   S  ITG  +++ 
Sbjct: 129 IGVQCGVLENEARALNKGFLKRMETGRPYIRVKLAMSLDGRTAMASGESQWITGPEARSA 188

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSL 232
           V  LRAQS  +L G  TVL D   LT R   L              P+R+++D   ++ L
Sbjct: 189 VQRLRAQSSVVLTGADTVLVDSARLTVRPEELGLSAELTALAAARPPLRVLIDGRLRVPL 248

Query: 233 DSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
           D+   +       ++VT           E+   +LALA    ++        DL+KL+  
Sbjct: 249 DAPFFQA---GNALVVTCAAASARGRYQEDGHEMLALADSAGHV--------DLRKLMGE 297

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           L  RGV  +LVE G  +A +F    LVD   ++ +   +G    P
Sbjct: 298 LGARGVNEVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARP 342


>gi|311693383|gb|ADP96256.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [marine bacterium HP15]
          Length = 371

 Score =  205 bits (522), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 131/370 (35%), Positives = 188/370 (50%), Gaps = 31/370 (8%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + D   M+ A++ +      T  NP V C+I +  +V+G G     G  HAE +AL +
Sbjct: 2   IENRDRAMMARAVQLAWRGRYSTHPNPRVGCVIARGDLVLGEGWHERAGEAHAETRALSQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG +ARGATAYVTLEPCSH+GR+PPCA+ +I+ G+  V     DP+  VSGRGL  L + 
Sbjct: 62  AGPDARGATAYVTLEPCSHFGRTPPCARALIDAGVAHVYAATKDPNPSVSGRGLDMLREA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI + + ++  E       ++ R    R  + LK+A S D    MA   S  ITG  ++ 
Sbjct: 122 GIRVTEGLLAEEAARLNPGFMKRMNTGRPWVRLKMAASLDGRTAMASGESQWITGPEARR 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--------HSPMRIILDPHFKLSLD 233
            V  LRA SDAIL G+GTVLADDP LT R   L +          P+R+I D   +    
Sbjct: 182 DVQRLRAISDAILTGVGTVLADDPSLTVRREELGDIGDATEPSRQPLRVIADRDARTPSS 241

Query: 234 SKIIK-----------TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282
           +KI++           T   AP   +      +  +A++   I        DL +LL  L
Sbjct: 242 AKILQGGNVQVFCASSTLATAPAQDLAALGISLTGVAWKDNGI--------DLAELLDSL 293

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFM 339
              G+  LLVE G  +A +FIN  LVD + LY++ + +G  G P+   PLE    +  + 
Sbjct: 294 GELGINELLVEAGPTLAGTFINENLVDELWLYQAPVFLGSTGRPTAHLPLETMADKVQWK 353

Query: 340 CVRRDYFGSD 349
            + R   G D
Sbjct: 354 VLDRRQVGED 363


>gi|229163049|ref|ZP_04291005.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus R309803]
 gi|228620455|gb|EEK77325.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus R309803]
          Length = 379

 Score =  205 bits (522), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 119/324 (36%), Positives = 180/324 (55%), Gaps = 4/324 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE+
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +I+ G++RVV+   D +  VSG G + L + GI +
Sbjct: 72  AKGATVYVTLEPCSHFGKTPPCCELLIKKGVQRVVIATLDCNPLVSGNGKRRLEEAGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGILEAEATLLNRFFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+    +H P+R+ILD H +    S +I   L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVILDTHLRTPSSSHVITDGLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +     ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF+
Sbjct: 251 IIVGKDVNKEKIASYEFENIAIFQMKTKQIEVQDILDLLGEKQILSLFVEGGQTVHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327
            +   + I+ Y S  +IG    P+
Sbjct: 311 QTNNFNEIVTYISPKLIGGKDAPT 334


>gi|170717790|ref|YP_001784854.1| riboflavin biosynthesis protein RibD [Haemophilus somnus 2336]
 gi|168825919|gb|ACA31290.1| riboflavin biosynthesis protein RibD [Haemophilus somnus 2336]
          Length = 376

 Score =  205 bits (522), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 123/331 (37%), Positives = 189/331 (57%), Gaps = 15/331 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D  FM  AL  ++  +  T+ NP+V C++VK+G ++GRG     G PHAEV AL +A
Sbjct: 6   SAQDEYFMQIALDLAKKGIFTTTPNPAVGCVLVKNGEIVGRGFHFKAGQPHAEVMALRDA 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G+ A+GATAYVTLEPCSH+GR+PPCAQ +IE GIR V+V + DP+ +V+G+GL  L   G
Sbjct: 66  GDRAKGATAYVTLEPCSHFGRTPPCAQGLIEAGIRNVIVAMKDPNPQVAGKGLAMLQAAG 125

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I     +++ + ++    +LTR   ++  + LK+A+S D    MA   S  I+G  ++  
Sbjct: 126 IESAVGLLQEKAELLNKGFLTRMRTQKPFVILKMAISLDGRTAMANGESKWISGEQARQD 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRL----NGLQEH-------SPMRIILDPHFKLS 231
           V   RA+  AIL    TVLADDP L  R     + LQ++        P+RIILD    ++
Sbjct: 186 VQQERAKVSAILSTAKTVLADDPLLNLRWEQFPSELQQNYKVEDVRQPVRIILDRQHLVT 245

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTSL 290
              K+ +    +PV +V + +  + A     + I +   +    L+ LL  L  R + SL
Sbjct: 246 PRHKLFQCQ--SPVWLVGDKERDMSAFPDYCQYIKLFPSNEHSYLENLLIELAKRQINSL 303

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            +E G  +A +FI   LV+ +I+Y +  ++G
Sbjct: 304 WLEAGETLAGAFIEENLVNELIIYMAPKLLG 334


>gi|313114897|ref|ZP_07800395.1| riboflavin biosynthesis protein RibD [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622774|gb|EFQ06231.1| riboflavin biosynthesis protein RibD [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 374

 Score =  205 bits (522), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 133/375 (35%), Positives = 203/375 (54%), Gaps = 28/375 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++VK+G +IG+G     G  HAE  AL    E+
Sbjct: 3   DKEYMRLALQLAKKGCGWTSPNPMVGAVVVKEGRIIGQGWHQRYGQAHAERNALASCTED 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            +GAT YVTLEPC HYG+ PPC   I++ GI RVVV   DP+  V+G+G+  L   GI +
Sbjct: 63  PQGATLYVTLEPCCHYGKQPPCVDAILDAGIHRVVVGSADPNPLVAGKGIAILRAHGIDV 122

Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
            + +++ E     K+F H Y+T    KR ++++K A++ D  I      S  ITG I++N
Sbjct: 123 TENVLQEECDALNKVFFH-YIT---TKRPYVSMKYAMTMDGKIATYTGASKWITGEIARN 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V   R +   I+VG+GT+LADDP LTCR+ G ++  P+RII D H +  L S+++ TA 
Sbjct: 179 HVQRQRHRFRGIMVGVGTILADDPLLTCRIEGGRD--PVRIICDTHLRTPLQSQVVMTAK 236

Query: 242 LAPVIIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
             P I+ T   DP    A+++    ++    +C   +L +L+  L    + S+L+EGG  
Sbjct: 237 QVPTILATCCGDPEKQAAYQQAGCRVLCLEAHCGHVNLLQLMEQLGQEQIDSILLEGGGT 296

Query: 298 VAHSFINSRLVDSIILYRSQIVIG--------EG-GIPSPLEEGYLEKNFMCVRRDYFGS 348
           +  S + S +V  +  Y +  + G        EG G+P P +  +  KN    R +  G 
Sbjct: 297 LNWSALESGIVQQVQAYIAPKLFGGRDAKAPIEGAGVPLP-DAAFRLKN---SRLEQLGK 352

Query: 349 DVCLEYIGKNLCLQE 363
           D  +E   +  CL E
Sbjct: 353 DFLIESEVEYPCLPE 367


>gi|308185884|ref|YP_003930015.1| bifunctional pyrimidine deaminase/reductase in pathway of
           riboflavin synthesis [Pantoea vagans C9-1]
 gi|308056394|gb|ADO08566.1| bifunctional pyrimidine deaminase/reductase in pathway of
           riboflavin synthesis [Pantoea vagans C9-1]
          Length = 366

 Score =  205 bits (522), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 129/337 (38%), Positives = 182/337 (54%), Gaps = 26/337 (7%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D R+M+ AL  +R     T  NP+V C+IV+DG V+G G     G PHAEV AL  AGE
Sbjct: 1   MDERYMARALELARRGRFTTMPNPNVGCVIVRDGEVVGEGWHQRAGEPHAEVHALRMAGE 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +ARGATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 61  KARGATAYVTLEPCSHHGRTPPCCDALIAAGVIRVVAAMQDPNPQVAGRGLHRLHQAGID 120

Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   +M  E +     +L R       I LK+  S D    MA   S  IT   ++  V 
Sbjct: 121 VSHGLMMPEAEALNRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSEAARRDVQ 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R + L           Q   P+R+I+D   +++  
Sbjct: 181 RLRAQSAAILSSSATVLADDPSLTVRWSELNTDSQALVDEQQLRQPVRVIIDSQNRVTPQ 240

Query: 234 SKII----KTALL--APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
            ++I    +T L+   P   +   D   +A+  R++ +        DL  ++ +L  R +
Sbjct: 241 HRLISQPGETWLMRHQPDQQLWPADVTQIAVPLREQQL--------DLVAMMMLLGQRQI 292

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            S+ VE GA +A + + + LVD +I+Y +  ++G  G
Sbjct: 293 NSVWVEAGATLAGALLQAGLVDELIVYLAPKLLGHEG 329


>gi|58583479|ref|YP_202495.1| riboflavin-specific deaminase; 5-amino-6-uracil reductase
           [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625292|ref|YP_452664.1| riboflavin-specific deaminase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188575264|ref|YP_001912193.1| riboflavin biosynthesis protein RibD [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|58428073|gb|AAW77110.1| riboflavin-specific deaminase; 5-amino-6-uracil reductase
           [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369232|dbj|BAE70390.1| riboflavin-specific deaminase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188519716|gb|ACD57661.1| riboflavin biosynthesis protein RibD [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 369

 Score =  205 bits (522), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 131/362 (36%), Positives = 197/362 (54%), Gaps = 16/362 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S+ D R+M+ ALR +      T  NP V C+IV+DG+ +G G     G PHAEV AL  
Sbjct: 8   ASADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRA 67

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPC+HYGR+PPCA  +IE G+ RVV  + DP  +V+G G   L   
Sbjct: 68  AGELARGATAYVTLEPCAHYGRTPPCALALIEAGVTRVVAAMADPFPQVNGGGFALLRDA 127

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI ++  +M ++ +     +L+R    R  + +K+  S D    +A   S  ITG  ++ 
Sbjct: 128 GIEVLSGVMHAQARTLNQGFLSRVERGRPWLRVKLGASLDGRTALASGQSKWITGADARA 187

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            V   RA++ AIL G GTVLADDP +T RL + +    P+R++LD   + +L  K I+  
Sbjct: 188 DVQRWRARAGAILTGAGTVLADDPSMTVRLGDDIACVPPLRVVLDAGLR-TLACKNIRNG 246

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINI--IYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
             AP + +  + D V A A          ++    DL  +L +L  RG+  + VE GA +
Sbjct: 247 -DAPTLYL--HGDAVAATALDGAECAALPLHVGRFDLSAVLALLAERGINEVHVEAGATL 303

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY----LEKNFMCVRRD--YFGSDVCL 352
           + + + + LVD +++Y + +++G+     PL  G     + + +    RD    G D+ L
Sbjct: 304 SGALLQAGLVDELLVYMAPVLLGD--TARPLLAGLGIETMAQRYELQLRDVRQLGQDLRL 361

Query: 353 EY 354
            Y
Sbjct: 362 RY 363


>gi|326390344|ref|ZP_08211903.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993621|gb|EGD52054.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 360

 Score =  205 bits (522), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 122/330 (36%), Positives = 186/330 (56%), Gaps = 15/330 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL+ +    G T+ NP V  +IVK+G +IG G   Y G PHAEV AL+ A E+ +G
Sbjct: 4   YMKRALKLAEKGWGYTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVEDVKG 63

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           +T +VTLEPCSHYG++PPC + II+ GI+RV + ++DP+ +VSG  ++ L + GI V   
Sbjct: 64  STMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNSIKRLKEAGIEVQVG 123

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           MME E +     ++     K   + LK A+S D  I      S  IT   S+   H +R 
Sbjct: 124 MMEKEARKLNEIFVKYITTKIPFVILKSAMSIDGKIACYNGNSKWITNEKSRKFAHKIRG 183

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           +  AI+VG+ TV+ D+P LT RL G +  SP+RII+D   +  L S +I+      +I  
Sbjct: 184 RVSAIMVGVNTVIKDNPMLTTRLEGYK--SPVRIIVDSRGRTPLASNVIRDKAAKTIIAT 241

Query: 249 TENDDPVLALAFRKK----NINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
           TE    ++  + RKK    +I +I     +    LK+L+  L  RG+ S+L+EGG  +  
Sbjct: 242 TE----LMPNSVRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNW 297

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           S +   +VD ++ + S  +IG     +P+E
Sbjct: 298 SALKEGIVDKVMFFISPRIIGGKNALTPVE 327


>gi|229080603|ref|ZP_04213123.1| Riboflavin biosynthesis protein [Bacillus cereus Rock4-2]
 gi|228702704|gb|EEL55170.1| Riboflavin biosynthesis protein [Bacillus cereus Rock4-2]
          Length = 360

 Score =  205 bits (522), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 126/354 (35%), Positives = 192/354 (54%), Gaps = 14/354 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  ++   G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARG 
Sbjct: 1   MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGG 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPCSH+GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  +
Sbjct: 61  TIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            E E K     +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R +
Sbjct: 121 CEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNE 180

Query: 190 SDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + AILVG  TV  D+P LT R+ NG    +P+R+ILD   ++ +++ ++        I  
Sbjct: 181 NAAILVGANTVQKDNPSLTTRIPNG---RNPIRVILDSTLRIPMEANVVTDREAPTWIFT 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           T N       A     + +         +L ++L +L  +GV+SLL+EGG  V  SFI +
Sbjct: 238 TSNHAEEKKKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIEN 297

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG-SDVCLEYIGKN 358
           +L+D IILY +  +IG    PS     ++E   +   +D     D+    IGK+
Sbjct: 298 KLMDKIILYFAPKIIGGRLAPS-----FVEGTGITKMKDAIEFKDISFTQIGKD 346


>gi|194016547|ref|ZP_03055161.1| riboflavin biosynthesis protein RibD [Bacillus pumilus ATCC 7061]
 gi|194012020|gb|EDW21588.1| riboflavin biosynthesis protein RibD [Bacillus pumilus ATCC 7061]
          Length = 356

 Score =  205 bits (522), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 117/316 (37%), Positives = 179/316 (56%), Gaps = 8/316 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ +L  +R   G TS NP V  +IV+D  ++G G     G PHAE+ AL+ AG++A+GA
Sbjct: 1   MNLSLENARAMKGQTSPNPLVGAVIVRDNEIVGVGAHMKAGEPHAEIHALKMAGDKAKGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPCSH+GR+ PCA+ +++ G+  VVV   DP+  V+GRG+  L   GI ++  +
Sbjct: 61  TIYVTLEPCSHHGRTGPCAEALVKAGVETVVVAALDPNPLVAGRGIAILQDAGIQVITGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E E  +    +     +K   +TLK  ++ D  I  A   S  IT   S+   H +R+ 
Sbjct: 121 LEQESILMNEVFNHFITKKTPFVTLKAGITLDGKIASATSDSKWITSETSRYDAHHIRSI 180

Query: 190 SDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           +DAILVG  TV+ DDP LT R+ NG   H P+RI+LD      L +KI+   +    I  
Sbjct: 181 NDAILVGAQTVIHDDPSLTARIPNG---HHPIRIVLDSRLSTPLTAKIVTDQMAPTWIFT 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCRD---LKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           T+  D     A     +++   D      L+++L +L  R V+SL++EGG  +  SF+  
Sbjct: 238 TKQADEEKRAALEAAGVSVFVTDSETRVPLQEVLQMLGERNVSSLMIEGGGQINASFLEQ 297

Query: 306 RLVDSIILYRSQIVIG 321
           +LVD +++Y +  +IG
Sbjct: 298 QLVDKLVIYMAPKLIG 313


>gi|327392953|dbj|BAK10375.1| riboflavin biosynthesis protein ribD [Pantoea ananatis AJ13355]
          Length = 367

 Score =  205 bits (522), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 128/328 (39%), Positives = 179/328 (54%), Gaps = 16/328 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D R+M+ AL  +R     T+ NP+V C+IV+DG ++G G     G PHAEV AL  AG+ 
Sbjct: 3   DERYMARALELARRGRFTTTPNPNVGCVIVRDGQIVGEGWHQRAGEPHAEVHALRMAGDR 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  ARGATAYVTLEPCSHHGRTPPCCDALIAAGVTRVVAAMQDPNPQVAGRGLHRLHQAGIEV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M  E +     +L R       I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMQEAEALNRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSPAARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLAD+P LT R + L   S           P+R+I+D   +++ D 
Sbjct: 183 LRAQSSAILSSSATVLADNPSLTVRWSELDSESQRLVDEAELRQPVRVIVDSQNRVTPDH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVE 293
           K+I+  L    ++  + DD           I +   D + DL  L+ +L  R + S+ VE
Sbjct: 243 KLIEQ-LGETWLMRQQVDDRHWPETV--TQIPVPLRDSQLDLVALMMVLGQRQINSVWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG 321
            GA +A + I + LVD +I+Y +  ++G
Sbjct: 300 AGATLAGALIQAGLVDELIVYVAPKLLG 327


>gi|291616522|ref|YP_003519264.1| RibD [Pantoea ananatis LMG 20103]
 gi|291151552|gb|ADD76136.1| RibD [Pantoea ananatis LMG 20103]
          Length = 367

 Score =  205 bits (522), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 128/328 (39%), Positives = 179/328 (54%), Gaps = 16/328 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D R+M+ AL  +R     T+ NP+V C+IV+DG ++G G     G PHAEV AL  AG+ 
Sbjct: 3   DERYMARALELARRGRFTTTPNPNVGCVIVRDGQIVGEGWHQRAGEPHAEVHALRMAGDR 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  ARGATAYVTLEPCSHHGRTPPCCDALIAAGVTRVVAAMQDPNPQVAGRGLHRLHQAGIEV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M  E +     +L R       I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMQEAEALNRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSPAARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLAD+P LT R + L   S           P+R+I+D   +++ D 
Sbjct: 183 LRAQSSAILSSSATVLADNPSLTVRWSELDSESQRLVDEAELRQPVRVIVDSQNRVTPDH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVE 293
           K+I+  L    ++  + DD           I +   D + DL  L+ +L  R + S+ VE
Sbjct: 243 KLIEQ-LGETWLMRQQVDDRHWPETV--TQIPVPLRDSQLDLVALMMVLGQRQINSVWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG 321
            GA +A + I + LVD +I+Y +  ++G
Sbjct: 300 AGATLAGALIQAGLVDELIVYVAPKLLG 327


>gi|255658129|ref|ZP_05403538.1| riboflavin biosynthesis protein RibD [Mitsuokella multacida DSM
           20544]
 gi|260849436|gb|EEX69443.1| riboflavin biosynthesis protein RibD [Mitsuokella multacida DSM
           20544]
          Length = 363

 Score =  205 bits (522), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 124/332 (37%), Positives = 179/332 (53%), Gaps = 5/332 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  AL  +R   G TS NP V  +IV+ G ++  G     G PHAE+ AL  AGE 
Sbjct: 3   DEEFMREALELARNAEGRTSPNPMVGAVIVQGGRIVAAGWHRKAGTPHAEIHALRMAGEL 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSHYGR+ PCA+ ++E GI+R V+ + DP+  V+GRG++ L   G+  
Sbjct: 63  AKGATLYVTLEPCSHYGRTGPCAKAVVEAGIKRCVIAMKDPNPLVAGRGIKILEDAGVET 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++E E +     +L    EK   + LK A++ D  I      S  IT   S+ +VH 
Sbjct: 123 VCGVLEEEARRLNEVFLKWVPEKIPFVALKTAMTLDGKIATRTGESQWITNETSRRRVHE 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R + D I VGIGTVL DDP LT RL      +P+RII+D   +  L +K++       +
Sbjct: 183 YRDRYDGIFVGIGTVLHDDPSLTTRLPDGTGKNPVRIIVDSQARTPLTAKVVCDGQAKTI 242

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           + VTE        A     + ++        DL+ L+ +L  R + S+ VEGG  V  S 
Sbjct: 243 VAVTEQAPAERCEALEAAGVEVVRAGKGAHVDLRALMQMLGQREICSVFVEGGGRVNFSL 302

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLE-EGY 333
           + + LVD +  + +  +IG     +P+E EG+
Sbjct: 303 LRAGLVDKVYAFIAPKLIGGSEALTPVEGEGF 334


>gi|307153764|ref|YP_003889148.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7822]
 gi|306983992|gb|ADN15873.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7822]
          Length = 369

 Score =  205 bits (522), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 116/334 (34%), Positives = 187/334 (55%), Gaps = 3/334 (0%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+FD   M   +  +R  +G TS NP V  +IV++  ++G G     G PHAEV AL  A
Sbjct: 10  SAFDREMMQRCITLARKALGATSPNPMVGAVIVREQEIVGEGFHPGAGQPHAEVFALSVA 69

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            E+A+GAT Y+ LEPC+HYGR+PPC + +I+ GI +V+V + DPD RVSG+G++ L++ G
Sbjct: 70  AEKAKGATIYINLEPCNHYGRTPPCTEALIKAGIAKVMVGMIDPDPRVSGKGIERLTEAG 129

Query: 124 IIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   +E E  +     ++ R + +R    LK A++ D  I      S  +TG  S+  
Sbjct: 130 IEVVAGIEEEACRRLNEGFIHRVLYQRPFGILKYAMTLDGKIAATSGHSAWVTGEASRRI 189

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LRA  DA+++G  TV  D+P LT   +G+  H+P+R+++     L L++ + +T  +
Sbjct: 190 VHQLRAACDAVIIGGNTVRQDNPHLTT--HGVSSHNPLRVVMSRSLNLPLEANLWETDKV 247

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             V+   E  +P L     K+ + +I  +     +++  L  RG  S+L E G  +A S 
Sbjct: 248 PTVVFTEEGINPPLQKQLLKRKVEVIELEVLTPTQVMQHLYQRGFCSVLWECGGTLAASA 307

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
           I   +V  ++ + +  +IG    PSP+ +  L+K
Sbjct: 308 ITEGMVQKVMAFIAPKIIGGESAPSPVGDLGLDK 341


>gi|261405997|ref|YP_003242238.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. Y412MC10]
 gi|261282460|gb|ACX64431.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. Y412MC10]
          Length = 369

 Score =  205 bits (521), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 128/338 (37%), Positives = 185/338 (54%), Gaps = 10/338 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +MS AL  +    G T  NP V C++VKDG + G G     G PHAEV AL  AG +
Sbjct: 9   DEFYMSLALDLAERAQGQTGINPVVGCVVVKDGALAGVGTHLERGTPHAEVHALNMAGPK 68

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A G+T YVTLEPCSHYG +PPC++ +I  G+RRVVV  +DP+  V+GRG+Q L   GI V
Sbjct: 69  AAGSTVYVTLEPCSHYGATPPCSERLIAEGVRRVVVACEDPNPLVAGRGIQMLRAAGIEV 128

Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  +  +  + L+ A++      R  +TLK A + D  I      S  I+   S+  VH 
Sbjct: 129 ETGILKDRALRLNEAFVKFITTGRPFVTLKTASTLDGKIASKTGDSKWISNEKSRELVHT 188

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR +   I+VG+ TV+AD+P LT RL G++   P+RII+D   ++ LDS ++   L    
Sbjct: 189 LRHRHQGIMVGVSTVIADNPSLTTRL-GVEGLHPVRIIVDSSLRIPLDSHVVSDGLAPTW 247

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           I+ TE  D        +    +  C      DLK  L  L  +G+ S+L+EGG  +  S 
Sbjct: 248 ILATEQADDTKRSELEELGAQVFPCGPGPRVDLKVALLQLGQKGIASILLEGGGTLNGSM 307

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKN 337
           +  +LVD +I + +  +I  GG  +P   +  GY + N
Sbjct: 308 LEQKLVDRLIQFIAPKII--GGYDAPGNYMFSGYEQMN 343


>gi|77461240|ref|YP_350747.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Pseudomonas fluorescens Pf0-1]
 gi|77385243|gb|ABA76756.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas
           fluorescens Pf0-1]
          Length = 376

 Score =  205 bits (521), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 127/335 (37%), Positives = 181/335 (54%), Gaps = 20/335 (5%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            DA FM+ AL  +R     T  NP V C+IV+DG ++G G     G PHAEV AL  AGE
Sbjct: 9   LDAHFMARALELARKGHYTTHPNPRVGCVIVRDGQIVGEGWHERAGEPHAEVHALRAAGE 68

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            ARGATAYVTLEPCSH+GR+PPCA  ++  GI RVV  + DP+ +V+GRGLQ L+  GI 
Sbjct: 69  RARGATAYVTLEPCSHHGRTPPCADALVNAGIGRVVAAMRDPNPQVAGRGLQRLTDAGIA 128

Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
            +  ++E+E +     +L R       + +K+A+S D    M    S  ITG  +++ V 
Sbjct: 129 TESGVLEAEARKLNQGFLKRMEHGLPFVRVKLAMSLDGRTAMESGESQWITGPAARSAVQ 188

Query: 185 LLRAQSDAILVGIGTVLADDPELTCR-----LNGLQ-----EHSPMRIILDPHFKLSLDS 234
            LRAQ+  +L G  TVLAD   LT R     L+  Q        P+R+++D   ++ LD+
Sbjct: 189 RLRAQASVVLTGADTVLADGARLTVRGEELGLDAAQTALALSRPPLRVLIDGRLRVPLDA 248

Query: 235 KIIKT--ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLL 291
              K   AL+A  + + E        A   + + +   D + DL +LL  L  RGV  +L
Sbjct: 249 PFFKAGPALVATCVAIEEQ------YAHGPECLIVPGDDGQVDLHQLLIELANRGVNEVL 302

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           VE G  +A +F    LVD  +++ +   +G    P
Sbjct: 303 VEAGPRLAGAFAQFGLVDEFVIFIAGKFLGSTARP 337


>gi|330877574|gb|EGH11723.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 378

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 128/345 (37%), Positives = 186/345 (53%), Gaps = 33/345 (9%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D  +M+ AL  +R  +  T  NP V C+IV+DG ++G+G  A  G PHAEV AL EA
Sbjct: 6   AALDVHYMAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALREA 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPCSH GR+PPCA  +I  G+ RVV  + DP+ +V+G GL  L   G
Sbjct: 66  GELARGATAYVTLEPCSHQGRTPPCADALISAGLGRVVAAMQDPNPQVAGSGLLRLMTAG 125

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++ESE +     ++ R    R ++ +K+A+S D    MA   S  ITG  +++ 
Sbjct: 126 ISVQCGVLESEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARSA 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----------PMRIILDPHFKLSL 232
           V  LRAQS  +L G  TVLAD   LT R + L  ++          P+R+++D   ++ L
Sbjct: 186 VQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVPL 245

Query: 233 DSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
           D+   +       ++VT           E+   +LALA    ++        DL++L+  
Sbjct: 246 DTPFFQA---GSALVVTCAAASARGRYQEDGHEMLALADSAGHV--------DLRRLMGE 294

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           L  RGV  +LVE G  +A +F    LVD   L+ +   +G    P
Sbjct: 295 LGARGVNEVLVEAGPRLAGAFTRLGLVDEFQLFTAGKFLGSSARP 339


>gi|268685855|ref|ZP_06152717.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268626139|gb|EEZ58539.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 369

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 122/327 (37%), Positives = 178/327 (54%), Gaps = 9/327 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  +   M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +A
Sbjct: 3   SDTNISMMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   G
Sbjct: 63  GEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  ++E++ +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  
Sbjct: 123 IKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V +LRA+S A+L GIGTVLAD+P L  R    L++  P RI+LD   +L  +S ++    
Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPNSHLVTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296
               I   E D+  L       +I I+          DL  L+ +L   G   ++VE G 
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETAGGKIDLHHLIRLLADEGFGEIMVEAGC 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +  +F+   L D I+LYRS  ++G G
Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGGG 327


>gi|332652827|ref|ZP_08418572.1| riboflavin biosynthesis protein RibD [Ruminococcaceae bacterium
           D16]
 gi|332517973|gb|EGJ47576.1| riboflavin biosynthesis protein RibD [Ruminococcaceae bacterium
           D16]
          Length = 368

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/333 (36%), Positives = 180/333 (54%), Gaps = 15/333 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL  +R  +G TS NP V  ++VKDG +IG+G     G  HAE +AL+     
Sbjct: 3   DTDYMNLALELARRGMGWTSPNPMVGAVLVKDGEIIGQGWHTRYGELHAEREALKNCTGS 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             G T YVTLEPC H GR PPC Q I++ GI RVVV  DDP+  V+G+GL+ L + GI V
Sbjct: 63  PAGTTLYVTLEPCCHQGRQPPCTQAILDAGITRVVVGSDDPNPLVAGKGLELLREHGIQV 122

Query: 127 D-----RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           +     +  ++  ++F H   TR    R ++ LK A++ D  I      S  +TG  ++ 
Sbjct: 123 ETGVCKQACDALNQVFFHFITTR----RPYVVLKYAMTMDGKIATRTGASKWVTGETARK 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +VH  R +  AIL G+GTVLADDP LTCR+ G +  +P+R+I D H +  L+S+I++TA 
Sbjct: 179 RVHEDRHRYRAILAGVGTVLADDPLLTCRMEGGR--NPIRVICDTHLRTPLESQIVRTAQ 236

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
             P I+ T   +      +      +     R    DL  L+  L    + S+L+EGG  
Sbjct: 237 EVPTILATACPEEARRFPYEAAGCRVWVLPERKGHVDLAALMDRLGAENIDSVLLEGGGT 296

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           +  S +   LV  +  Y +  + G G   SP+E
Sbjct: 297 LNWSALEQGLVQKVQAYIAPKLFGGGAAKSPVE 329


>gi|206969393|ref|ZP_03230348.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH1134]
 gi|206736434|gb|EDZ53592.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH1134]
          Length = 367

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 126/355 (35%), Positives = 192/355 (54%), Gaps = 14/355 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL  ++   G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARG
Sbjct: 7   YMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
            T YVTLEPCSH+GR+ PCA  I++ GI++VVV   DP+  VSGRG++ L   GI ++  
Sbjct: 67  GTIYVTLEPCSHHGRTGPCAGAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVG 126

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + E E K     +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R 
Sbjct: 127 VCEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRN 186

Query: 189 QSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           ++ AILVG  TV  D+P LT R+ NG    +P+R+ILD   ++ +++ ++        I 
Sbjct: 187 ENAAILVGANTVQKDNPSLTTRIPNG---RNPIRVILDSTLRIPMEANVVTDREAPTWIF 243

Query: 248 VTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
            T N       A     + +         +L ++L +L  +GV+SLL+EGG  V  SFI 
Sbjct: 244 TTSNHAEEKKKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIE 303

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG-SDVCLEYIGKN 358
           ++L+D IILY +  +IG    PS     ++E   +   +D     D+    IGK+
Sbjct: 304 NKLMDKIILYFAPKIIGGRLAPS-----FVEGTGITKMKDAIEFKDISFTQIGKD 353


>gi|229128665|ref|ZP_04257643.1| Riboflavin biosynthesis protein [Bacillus cereus BDRD-Cer4]
 gi|228654858|gb|EEL10718.1| Riboflavin biosynthesis protein [Bacillus cereus BDRD-Cer4]
          Length = 348

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 124/338 (36%), Positives = 186/338 (55%), Gaps = 18/338 (5%)

Query: 23  GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
           G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ RGAT YVTLEPCSH+
Sbjct: 3   GQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQVRGATIYVTLEPCSHH 62

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAY 141
           GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  + E E K     +
Sbjct: 63  GRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEVF 122

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
               + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R ++ AILVG  TV 
Sbjct: 123 NKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRNENAAILVGANTVQ 182

Query: 202 ADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
            D+P LT R+ NG    +P+RIILD   ++ +++ ++        I  T N      +A 
Sbjct: 183 KDNPSLTTRIPNG---RNPIRIILDSTLRIPMEANVVTDGEAPTWIFTTSNHAAKKKIAL 239

Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
               + +         +L ++L +L  +GV+SLLVEGG  V  SFI ++L+D +ILY + 
Sbjct: 240 ENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLVEGGGEVNASFIENKLMDKLILYVAP 299

Query: 318 IVIGEGGIPSPLEEGYLEK----------NFMCVRRDY 345
            +IG    PS +E   + K          +F  V +DY
Sbjct: 300 KIIGGRLAPSFVEGTGITKMQDAIEFKDVSFTQVGKDY 337


>gi|113461193|ref|YP_719262.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Haemophilus somnus 129PT]
 gi|112823236|gb|ABI25325.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haemophilus
           somnus 129PT]
          Length = 376

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/331 (37%), Positives = 189/331 (57%), Gaps = 15/331 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D  FM  AL  ++  +  T+ NP+V C++VK+G ++GRG     G PHAEV AL +A
Sbjct: 6   SAQDEYFMQIALELAKKGIFTTTPNPAVGCVLVKNGEIVGRGFHFKAGQPHAEVMALRDA 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G+ A+GATAYVTLEPCSH+GR+PPCAQ +IE GIR V+V + DP+ +V+G+GL  L   G
Sbjct: 66  GDRAKGATAYVTLEPCSHFGRTPPCAQGLIEAGIRNVIVAMKDPNPQVAGKGLAMLQAAG 125

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I     +++ + ++    +LTR   ++  + LK+A+S D    MA   S  I+G  ++  
Sbjct: 126 IESAVGLLQEKAELLNKGFLTRMRTQKPFVILKMAISLDGRTAMANGESKWISGEQARQD 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRL----NGLQEH-------SPMRIILDPHFKLS 231
           V   RA+  AIL    TVLADDP L  R     + LQ++        P+RIILD    ++
Sbjct: 186 VQQERAKVSAILSTAKTVLADDPLLNLRWEQFPSELQQNYKVEEVRQPVRIILDRLHLVT 245

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTSL 290
              K+ +    +PV +V + +  + A     + I +   +    L+ LL  L  R + SL
Sbjct: 246 PRHKLFQCQ--SPVWLVGDKERDMSAFPDYCQYIKLFPSNEHSYLENLLIELAKRQINSL 303

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            +E G  +A +FI   LV+ +I+Y +  ++G
Sbjct: 304 WLEAGETLAGAFIEENLVNELIIYMAPKLLG 334


>gi|302879548|ref|YP_003848112.1| riboflavin biosynthesis protein RibD [Gallionella capsiferriformans
           ES-2]
 gi|302582337|gb|ADL56348.1| riboflavin biosynthesis protein RibD [Gallionella capsiferriformans
           ES-2]
          Length = 366

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 121/322 (37%), Positives = 185/322 (57%), Gaps = 6/322 (1%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           VS+ D+R+M+ AL+ +   +  TS NP V C++V+DG ++G G     G PHAEV AL +
Sbjct: 2   VSAEDSRWMAQALQLAERGLYSTSPNPRVGCVLVRDGNLLGAGWHKKAGEPHAEVYALLD 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ A GATAYVTLEPCSHYGR+PPC   +I  G+ RVVV + DP+ +V+GRG+  L   
Sbjct: 62  AGDAAHGATAYVTLEPCSHYGRTPPCCDALIHAGVARVVVAMQDPNPQVAGRGIAKLRAA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI VD  +ME+  +     +  R       +  K+ +S D    ++   S  ITG  ++ 
Sbjct: 122 GISVDCGLMEAAARELNAGFCARMTRGLPQVRSKVGMSLDGRTALSNGVSQWITGADARL 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V   RA+S A+L GI T+LADD +L  R   + E  P R++LD H ++ LD++I++  +
Sbjct: 182 DVQHWRARSCAVLTGINTILADDAQLNVREIDV-ERQPKRVVLDSHLRMPLDARILQGGV 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINII-YCDCR-DLKKLLTILVGRGVTSLLVEGGAAVA 299
           L  +     +D  +  L      + ++   D R DL  ++  L  RG   +LVE GA + 
Sbjct: 241 L--IYAALRDDHKIERLQQAGAEVVLLPGTDGRVDLPAVMRDLASRGCNEILVEAGAVLN 298

Query: 300 HSFINSRLVDSIILYRSQIVIG 321
            + + + LVD ++LY S  ++G
Sbjct: 299 GALLRAELVDEMLLYISPQLLG 320


>gi|301381786|ref|ZP_07230204.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           tomato Max13]
 gi|302061014|ref|ZP_07252555.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           tomato K40]
 gi|302130534|ref|ZP_07256524.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           tomato NCPPB 1108]
          Length = 378

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 128/345 (37%), Positives = 186/345 (53%), Gaps = 33/345 (9%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D  +M+ AL  +R  +  T  NP V C+IV+DG ++G+G  A  G PHAEV AL EA
Sbjct: 6   AALDVHYMAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALREA 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPCSH GR+PPCA  +I  G+ RVV  + DP+ +V+G GL  L   G
Sbjct: 66  GELARGATAYVTLEPCSHQGRTPPCADALISAGLARVVAAMQDPNPQVAGSGLLRLMTAG 125

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++ESE +     ++ R    R ++ +K+A+S D    MA   S  ITG  +++ 
Sbjct: 126 ISVQCGVLESEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARSA 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----------PMRIILDPHFKLSL 232
           V  LRAQS  +L G  TVLAD   LT R + L  ++          P+R+++D   ++ L
Sbjct: 186 VQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVPL 245

Query: 233 DSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
           D+   +       ++VT           E+   +LALA    ++        DL++L+  
Sbjct: 246 DTPFFQA---GSALVVTCAAASARGRYQEDGHEMLALADSAGHV--------DLRRLMGE 294

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           L  RGV  +LVE G  +A +F    LVD   L+ +   +G    P
Sbjct: 295 LGARGVNEVLVEAGPRLAGAFTRLGLVDEFQLFIAGKFLGSSARP 339


>gi|260886861|ref|ZP_05898124.1| riboflavin biosynthesis protein RibD [Selenomonas sputigena ATCC
           35185]
 gi|330839340|ref|YP_004413920.1| riboflavin biosynthesis protein RibD [Selenomonas sputigena ATCC
           35185]
 gi|260863460|gb|EEX77960.1| riboflavin biosynthesis protein RibD [Selenomonas sputigena ATCC
           35185]
 gi|329747104|gb|AEC00461.1| riboflavin biosynthesis protein RibD [Selenomonas sputigena ATCC
           35185]
          Length = 367

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 128/362 (35%), Positives = 194/362 (53%), Gaps = 10/362 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  AL  +    G T+ NP V  +IV++G ++G G     G PHAEV AL  AG+ 
Sbjct: 4   DEDFMREALLLAANARGRTAPNPLVGAVIVREGRIVGAGWHRKAGTPHAEVHALAMAGDL 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GAT YVTLEPCSH+GR+ PCA+ +++ G++RVV  + DP+  V+G+G   L   G+ V
Sbjct: 64  AHGATVYVTLEPCSHHGRTGPCAEALVKAGVKRVVTAMLDPNPLVAGKGKAMLEAAGVEV 123

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++  E +    AYL    EK   +TLK A++ D  I  A   S  ITG  ++ +VH 
Sbjct: 124 TVGVLAEEARRLNEAYLKWVTEKLPFVTLKTAMTLDGKIATAAGKSQWITGEAARRRVHE 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +R  +DAI+VGIGTVLADDP LT RL      +P+R+I+D   +  L + +++      +
Sbjct: 184 MRDVADAIVVGIGTVLADDPSLTTRLVDGTGRNPVRVIVDSRARTPLAATVVQDGAAKTL 243

Query: 246 IIVTENDDPVLALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           + VT         A     + ++     +  DL  L+ +L  R +TS+ VEGG  +  S 
Sbjct: 244 VAVTCAAPEERCAALEAAGVEVVRAGEGERVDLATLMRLLAARDMTSVFVEGGGTLNFSL 303

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLE-EGYLEKNFMCV----RRDYFGSDVCLE-YIG 356
           + + LVD I  + +  ++G     +P+E  G+ E     V      +  G+D+ L  Y+ 
Sbjct: 304 LAAGLVDKIHAFIAPKIVGGKAALTPVEGAGFAELADAAVLTRLTAEQVGADILLTGYVA 363

Query: 357 KN 358
           K 
Sbjct: 364 KE 365


>gi|253681051|ref|ZP_04861854.1| riboflavin biosynthesis protein RibD [Clostridium botulinum D str.
           1873]
 gi|253562900|gb|EES92346.1| riboflavin biosynthesis protein RibD [Clostridium botulinum D str.
           1873]
          Length = 372

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 132/377 (35%), Positives = 202/377 (53%), Gaps = 24/377 (6%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M  A+  S+  +G T  NP V  +IVKD  +IG G     G  HAE+ AL+ A E
Sbjct: 1   MDLSYMKRAIELSKLGIGYTYPNPLVGAIIVKDNKIIGEGYHKRFGENHAEINALKNAKE 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +  GAT YVTLEPCSHYG++PPC   II+ GI++V++ + DP+  V+GRG + L   GI 
Sbjct: 61  DVSGATMYVTLEPCSHYGKTPPCVNAIIKSGIKKVIIGMSDPNPLVAGRGTRILKDNGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V+ +++ E K     ++     K     LK A++ D  I      S  I+  +S+  VH
Sbjct: 121 VVEGILKEEVKKVNEIFIKYITTKLPFCILKTAMTLDGKIATRDGDSKWISNEVSRQYVH 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            +R +   I+VGIGT++ D+P LT R+   +     RII+D   ++ +++K++     A 
Sbjct: 181 EIRHKVAGIMVGIGTIIKDNPSLTTRIINKKGRDSTRIIVDSKGRIPIEAKVLNLESQAK 240

Query: 245 VIIVTE---NDDPVLALAFRKKNINII---YCDCR-DLKKLLTILVGRGVTSLLVEGGAA 297
            IIVT    N + +  +  R K   +I    CD R DLK L+  L  R + S+L+EGGA 
Sbjct: 241 TIIVTTELANREKIEVI--RDKGAEVIITPLCDNRVDLKYLMEELGKRNIDSILLEGGAE 298

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE--------EGYLEKNFMCVRRDYFGSD 349
           + +S +N  +VD +I + S  +IG     +P+E        EG    N   ++   F  D
Sbjct: 299 LNYSVLNKGIVDKVISFISPKIIGGKEAKTPVEGLGKSTISEGI---NLENIKVSRFQED 355

Query: 350 VCLE-YIG--KNLCLQE 363
           + +E YI   + LC QE
Sbjct: 356 IVIEGYIKGEEKLCSQE 372


>gi|240127481|ref|ZP_04740142.1| Riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 361

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 121/321 (37%), Positives = 176/321 (54%), Gaps = 9/321 (2%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
            M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +AGE A+G
Sbjct: 1   MMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQAGEMAKG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           ATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   GI  +  
Sbjct: 61  ATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAGIKTECG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++E++ +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  V +LRA
Sbjct: 121 LLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVLRA 180

Query: 189 QSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           +S A+L GIGTVLAD+P L  R    L++  P RI+LD   +L  +S ++        I 
Sbjct: 181 ESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPNSHLVTDGQSPTYIA 238

Query: 248 VTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             E D+  L       +I I+          DL  L+ +L   G   ++VE G  +  +F
Sbjct: 239 TLERDEDKLRPYREHAHIRILMPSETAGGKIDLHHLIRLLADEGFGEIMVEAGCELTSAF 298

Query: 303 INSRLVDSIILYRSQIVIGEG 323
           +   L D I+LYRS  ++G G
Sbjct: 299 LAENLADEIVLYRSPKILGGG 319


>gi|269213784|ref|ZP_05982845.2| riboflavin biosynthesis protein RibD [Neisseria cinerea ATCC 14685]
 gi|269145361|gb|EEZ71779.1| riboflavin biosynthesis protein RibD [Neisseria cinerea ATCC 14685]
          Length = 361

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 122/320 (38%), Positives = 180/320 (56%), Gaps = 15/320 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           ++A  RFS      TS NP V C+I     ++G+G     G PHAEV AL +AGE A+GA
Sbjct: 8   LAALGRFS------TSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQAGEMAQGA 61

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129
           TA+VTLEPCSHYGR+PPCA+ +I+ G+ RVV  + DP+  V+G+GL  L   GI  +  +
Sbjct: 62  TAFVTLEPCSHYGRTPPCAKALIQAGVSRVVAAMRDPNPLVAGKGLALLEAAGIKTECGL 121

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E++ +     +L+R   +R  + LK AVS D    ++   S  IT   ++  V +LRA+
Sbjct: 122 LENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITSEEARADVQVLRAE 181

Query: 190 SDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           S A+L GIGTVLAD+P+L  R    L++  P RI+LD   +L   S ++        I  
Sbjct: 182 SCAVLTGIGTVLADNPQLNVRDFPTLRQ--PARIVLDSRLRLPPYSHLVTDGQSPTYIAT 239

Query: 249 TENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            E D+  L       +I I+      D + DL  L+ +L   G   ++VE G+ +  +F+
Sbjct: 240 LERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTSAFL 299

Query: 304 NSRLVDSIILYRSQIVIGEG 323
              L D I+LYRS  ++G G
Sbjct: 300 AEDLADEIVLYRSPKILGSG 319


>gi|229086682|ref|ZP_04218850.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-44]
 gi|228696629|gb|EEL49446.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-44]
          Length = 379

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 119/324 (36%), Positives = 181/324 (55%), Gaps = 4/324 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV A+  AG++
Sbjct: 12  DQEYMNIALQLAESTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHAIHMAGDK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A G+T YVTLEPCSH+G++PPC   +IE  ++RVV+   D +  VSG G + L + GI V
Sbjct: 72  AYGSTVYVTLEPCSHFGKTPPCCDLLIEKRVKRVVIATLDCNPLVSGSGARRLQEAGISV 131

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E       +      K   +T+K A+S D  I  +   S  ITG  +++ VH 
Sbjct: 132 TTGVLEEEATTLNRYFFHYMKTKLPFVTIKTAMSLDGKIATSTGESKWITGEDARDDVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT RL    +H P+RIILD H +  L S II   +    
Sbjct: 192 YRHTHDAILVGVNTVIADNPSLTTRLPNGGKH-PIRIILDTHLRTPLSSHIITDGIAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ D      +  + I++     +  ++++ L++L  + + SL VEGG +V  SF+
Sbjct: 251 IIVGKDVDKGKITTYESQGISVFQMKTKQIEIREFLSLLGEKQILSLFVEGGQSVHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327
            ++  + I+ Y S  +IG    P+
Sbjct: 311 EAKCFNEIVTYISPKLIGGKDAPT 334


>gi|325983451|ref|YP_004295853.1| riboflavin biosynthesis protein RibD [Nitrosomonas sp. AL212]
 gi|325532970|gb|ADZ27691.1| riboflavin biosynthesis protein RibD [Nitrosomonas sp. AL212]
          Length = 366

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 119/325 (36%), Positives = 182/325 (56%), Gaps = 9/325 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           SS D  FMS ALR +   +  T+ NP V C++  D  +IG G     G PHAE+ AL   
Sbjct: 3   SSVDYAFMSYALRLAEKGLYSTTPNPRVGCVLTLDDRIIGSGWHEKAGQPHAEINALAST 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            E A GATAY+TLEPCSHYGR+PPC   +I+ GI +V++ ++DP+  VSGRG   L Q G
Sbjct: 63  SEAACGATAYITLEPCSHYGRTPPCVYALIDAGITKVIIAMEDPNPMVSGRGCMLLEQAG 122

Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   +++ + +     ++ R + K+  I LK A S D    +    S  ITG  ++  
Sbjct: 123 ITVQTGLLQVQAQALNIGFIMRMMHKKPWIRLKTAASLDGKTALNNGISQWITGEAARQD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H  RA+S AI+ GIGTV +D+P+L+ R +      P +II+D H  + L++K++++   
Sbjct: 183 GHRWRARSCAIMTGIGTVKSDNPQLSVR-HAETARQPKKIIVDSHLNIPLNAKLLQSD-- 239

Query: 243 APVIIVTENDDPV-LALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
             V+I T +D+ V    A  +    +I         DLKK++T+L    +  +LVE G  
Sbjct: 240 GEVLIFTAHDESVEKKEALSRMGAQVIVMPNEKGAIDLKKMMTVLAAMEINEVLVEAGRE 299

Query: 298 VAHSFINSRLVDSIILYRSQIVIGE 322
           +  + I + LVD +I Y +  ++G+
Sbjct: 300 LNGALIEAGLVDEMIFYLAPHLLGD 324


>gi|157694276|ref|YP_001488738.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Bacillus pumilus SAFR-032]
 gi|157683034|gb|ABV64178.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Bacillus pumilus SAFR-032]
          Length = 363

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 119/322 (36%), Positives = 186/322 (57%), Gaps = 16/322 (4%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           R+M+ AL  +R   G TS NP V  +IV++  ++G G     G PHAE+ AL+ AG++A+
Sbjct: 6   RYMNLALENARAMKGQTSPNPLVGAVIVRENEIVGVGAHMKAGEPHAEIHALKMAGDKAK 65

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GAT YVTLEPCSH+GR+ PCA+ +++ G+  VVV   DP+  V+GRG+  L   GI ++ 
Sbjct: 66  GATIYVTLEPCSHHGRTGPCAEALVKAGVETVVVAALDPNPLVAGRGIAILQDAGIQVIT 125

Query: 128 RMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            ++E E     ++F H ++T+   K   +TLK  ++ D  I  A   S  IT   S+   
Sbjct: 126 GVLEQESILMNEVFNH-FITK---KTPFVTLKAGITLDGKIASATSDSKWITSETSRYDA 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           H +R+ +DAILVG  TV+ DDP LT R+ NG   + P+RI+LD      L +KI+   + 
Sbjct: 182 HHIRSINDAILVGAQTVIHDDPSLTARIPNG---NHPIRIVLDSKLSTPLTAKIVTDQMA 238

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRD---LKKLLTILVGRGVTSLLVEGGAAVA 299
              I  T+  D     A     +++   D      L+++L +L  + V+SL++EGG  + 
Sbjct: 239 PTWIFTTKQADEEKRAALEAAGVSVFVTDSETRVPLQEVLQMLGEKNVSSLMIEGGGQIN 298

Query: 300 HSFINSRLVDSIILYRSQIVIG 321
            SF+  +LVD +++Y +  +IG
Sbjct: 299 ASFLEQQLVDKLVIYMAPKLIG 320


>gi|21230168|ref|NP_636085.1| riboflavin-specific deaminase/5-amino-6-uracil reductase
           [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66769842|ref|YP_244604.1| riboflavin-specific deaminase/5-amino-6-uracil reductase
           [Xanthomonas campestris pv. campestris str. 8004]
 gi|188993059|ref|YP_001905069.1| Riboflavin biosynthesis protein RibD
           (Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-[5-phosphoribosylamino]uracil
           reductase) [Xanthomonas campestris pv. campestris str.
           B100]
 gi|21111703|gb|AAM40009.1| riboflavin-specific deaminase/5-amino-6-uracil reductase
           [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66575174|gb|AAY50584.1| riboflavin-specific deaminase/5-amino-6-uracil reductase
           [Xanthomonas campestris pv. campestris str. 8004]
 gi|167734819|emb|CAP53029.1| Riboflavin biosynthesis protein RibD
           (Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-[5-phosphoribosylamino]uracil
           reductase) [Xanthomonas campestris pv. campestris]
          Length = 364

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 137/369 (37%), Positives = 198/369 (53%), Gaps = 19/369 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M VS+ + R+M+ ALR +      T  NP V C+IV+DG  +G G     G PHAEV AL
Sbjct: 1   MSVSADNHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGACVGEGFHQRAGGPHAEVFAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE+ARGATAYVTLEPC+HYGR+PPCA  +I  G+ RVV  + DP  +V+G G   L 
Sbjct: 61  RAAGEQARGATAYVTLEPCAHYGRTPPCALALIAAGVTRVVAAMADPFPQVNGGGFTLLR 120

Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   +ME++ +     +L+R    R  + +K+  S D    MA   S  ITG  +
Sbjct: 121 DAGIQVHSGVMEAQARALNQGFLSRVERGRPWVRVKLGASLDGRTAMASGESKWITGADA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----PMRIILDPHFKLSLDSK 235
           +  V   RA++  IL G GTVLADDP +T RL    E +    P+R++LD   +    + 
Sbjct: 181 RADVQRWRARAGVILTGAGTVLADDPSMTVRLG---EDTPCVPPLRVVLDAGLRTLACAN 237

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINI--IYCDCRDLKKLLTILVGRGVTSLLVE 293
           I +    AP + +   D  V A AF         ++    DL  +L  L  RG+  + VE
Sbjct: 238 IRQGD--APTLYLHGAD--VTAPAFDGAEFAAMPLHAGRFDLAAVLASLAERGINEVHVE 293

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
            GA ++ + + + LVD +++Y + +++GE     PL  G L  + M  R      DV   
Sbjct: 294 AGATLSGALLQAGLVDELLVYMAPVLLGE--TARPLLAG-LGIDTMAQRHALQLLDV--R 348

Query: 354 YIGKNLCLQ 362
           +IG++L L+
Sbjct: 349 HIGQDLRLR 357


>gi|160944654|ref|ZP_02091881.1| hypothetical protein FAEPRAM212_02168 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443838|gb|EDP20842.1| hypothetical protein FAEPRAM212_02168 [Faecalibacterium prausnitzii
           M21/2]
          Length = 374

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 133/375 (35%), Positives = 202/375 (53%), Gaps = 28/375 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++VK+G +IG+G     G  HAE  AL    E+
Sbjct: 3   DKEYMRLALQLAKKGCGWTSPNPMVGAVVVKEGRIIGQGWHQRYGQAHAERNALASCTED 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            +GAT YVTLEPC HYG+ PPC   I++ GI RVVV   DP+  V+G+G+  L   GI +
Sbjct: 63  PQGATLYVTLEPCCHYGKQPPCVDAILDAGIHRVVVGSADPNPLVAGKGIAILRAHGIDV 122

Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
            + +++ E     K+F H Y+T    KR  +++K A++ D  I      S  ITG I++N
Sbjct: 123 TENVLQEECDALNKVFFH-YIT---TKRPFVSMKYAMTMDGKIATYTGASKWITGEIARN 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V   R +   I+VG+GT+LADDP LTCR+ G ++  P+RII D H +  L S+++ TA 
Sbjct: 179 HVQRQRHRFRGIMVGVGTILADDPLLTCRIEGGRD--PVRIICDTHLRTPLQSQVVMTAK 236

Query: 242 LAPVIIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
             P I+ T   DP    A+++    ++    +C   +L +L+  L    + S+L+EGG  
Sbjct: 237 QVPTILATCCGDPEKQAAYQQAGCRVLCLEAHCGHVNLLQLMEQLGQEQIDSILLEGGGT 296

Query: 298 VAHSFINSRLVDSIILYRSQIVIG--------EG-GIPSPLEEGYLEKNFMCVRRDYFGS 348
           +  S + S +V  +  Y +  + G        EG G+P P +  +  KN    R +  G 
Sbjct: 297 LNWSALESGIVQQVQAYIAPKLFGGRDAKAPIEGAGVPLP-DAAFRLKN---SRLEQLGK 352

Query: 349 DVCLEYIGKNLCLQE 363
           D  +E   +  CL E
Sbjct: 353 DFLIESEVEYPCLPE 367


>gi|289577285|ref|YP_003475912.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter italicus
           Ab9]
 gi|289526998|gb|ADD01350.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter italicus
           Ab9]
          Length = 360

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/330 (36%), Positives = 185/330 (56%), Gaps = 15/330 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL  +    G T+ NP V  +IVK+G +IG G   Y G PHAEV AL+ A E+ +G
Sbjct: 4   YMKRALTLAEKGWGYTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVEDVKG 63

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           +T +VTLEPCSHYG++PPC + II+ GI++V + ++DP+ +VSG G++ L + GI V   
Sbjct: 64  STMFVTLEPCSHYGKTPPCVEEIIKSGIKKVYIAMEDPNPKVSGNGIKRLKEAGIEVHVG 123

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           MME E +     +      K   + LK A+S D  I      S  IT   S+   H +R 
Sbjct: 124 MMEKEARKLNEIFFKYITTKFPFVILKSAMSIDGKIACYNGNSKWITNEKSRKFAHKIRG 183

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           +  AI+VG+ TV+ D+P LT RL G +  +P+RII+D   ++ L+S +I+      +I  
Sbjct: 184 RVSAIMVGVNTVIKDNPMLTTRLEGYK--NPVRIIVDSRGRIPLNSNVIRDKTAKTIIAT 241

Query: 249 TENDDPVLALAFRKK----NINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
           TE    ++    RKK    +I +I     +    LK+L+  L  RG+ S+L+EGG  +  
Sbjct: 242 TE----LMPNNKRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNW 297

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           S     +VD ++ + S  +IG     +P+E
Sbjct: 298 SAFKEGIVDKVMFFISPRIIGGKNALTPVE 327


>gi|312880086|ref|ZP_07739886.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           ;5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Aminomonas paucivorans DSM 12260]
 gi|310783377|gb|EFQ23775.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           ;5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Aminomonas paucivorans DSM 12260]
          Length = 378

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/325 (37%), Positives = 178/325 (54%), Gaps = 20/325 (6%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  AL  +    G  S NP V C++V++G V+G G     G PHAEV+AL  AG  A G
Sbjct: 21  FMHMALSLALRGTGFVSPNPRVGCVVVREGKVVGWGYHRRYGGPHAEVEALRRAGTLAEG 80

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           +T YV LEPCSH G++PPCA  ++E  + R VV + DP+ RV GRG+  L   GI +++ 
Sbjct: 81  STVYVNLEPCSHQGKTPPCAPQLVEARVARAVVGMRDPNPRVDGRGIDLLRDAGIEVLES 140

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++  E +     ++ R    R  +TLK A+S D    +    S  ITG +++++ HLLR 
Sbjct: 141 VLPEEARWINRGFIRRMTRGRPWVTLKGALSLDGTTALESGESRWITGPLARDKAHLLRG 200

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DAILVG+GTVL DDPELT R   ++   P R++LD   +    +K++ +         
Sbjct: 201 EHDAILVGVGTVLLDDPELTVR--SVEGVCPRRVVLDGALRTPQTAKVLAS---GGCTFF 255

Query: 249 TENDDPVLA-LAFRKKNINIIYCDCR---------DLKKLLTILVGRGVTSLLVEGGAAV 298
           TE D P  A     ++   I    CR          L  +L  L   G+ +LLVEGGA V
Sbjct: 256 TEQDMPQGAGQRLEERGAEI----CRVPRGPEGGLSLVPVLEHLASAGINTLLVEGGARV 311

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323
           A SF+  +LVD + L+ +  ++G G
Sbjct: 312 AGSFLREKLVDEVSLFLAPKLLGRG 336


>gi|292492824|ref|YP_003528263.1| riboflavin biosynthesis protein RibD [Nitrosococcus halophilus Nc4]
 gi|291581419|gb|ADE15876.1| riboflavin biosynthesis protein RibD [Nitrosococcus halophilus Nc4]
          Length = 373

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 118/331 (35%), Positives = 184/331 (55%), Gaps = 14/331 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ +   +  T  NP V C++V+ G ++G G   + G  HAEV AL +A   
Sbjct: 6   DRAYMARALKLAWRGLFTTDPNPRVGCVLVRAGEIVGEGWHQWAGDAHAEVNALRQADVR 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGAT YVTLEPC H GR+PPC + +IE G+ RVV  + DP+ +V+G+GL  L + G+ V
Sbjct: 66  ARGATCYVTLEPCCHRGRTPPCTEALIEAGVVRVVAAMRDPNPKVAGQGLAQLREAGLQV 125

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  +++ E +     ++ R V+ R  +  K+A+S D    +A   S  IT   ++  V  
Sbjct: 126 EYGLLQEEAQALNPGFVQRLVQGRPWVRCKLAMSLDGATALASGESRWITAPPARRDVQR 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQ-------EHSPMRIILDPHFKLSLDSKIIK 238
            RA+S AIL GIGTV+ DDP L  R   LQ       +  P R+ILD    +S  ++++ 
Sbjct: 186 WRARSSAILTGIGTVIGDDPALNVRYEELQNEVPPGFDRQPWRVILDRKLAISEKARLL- 244

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSLLVEG 294
            +L  PV+I   + +   A + R K   +I      +  DLK L+ +L  R +  L VE 
Sbjct: 245 -SLPGPVLIACADGEQPKAESLRSKGAEVISLPVASEGLDLKALMAVLAAREINELHVEC 303

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           GA +A S + + L+D ++LY +  ++GE  +
Sbjct: 304 GARLAGSLLQAGLMDELVLYIAPKLMGEASL 334


>gi|89894408|ref|YP_517895.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Desulfitobacterium hafniense Y51]
 gi|89333856|dbj|BAE83451.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Desulfitobacterium hafniense Y51]
          Length = 372

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 130/331 (39%), Positives = 191/331 (57%), Gaps = 11/331 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +MS AL  +   +G TS NP V C+IVKDG+++G G     G PHAEV AL+ AGE
Sbjct: 10  LDNHYMSRALELAALAMGRTSPNPLVGCVIVKDGVIVGEGYHQKAGTPHAEVHALQAAGE 69

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            ARGATAYVTLEPCSH+G++PPCA  +I+ GI+RVVV + DP+  VSG+G+  L   GI 
Sbjct: 70  HARGATAYVTLEPCSHFGKTPPCADALIKAGIQRVVVAMVDPNPLVSGQGITRLRAAGIQ 129

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           VD  + E E +     +L         +  K A++ D  I      S  ++   S+  VH
Sbjct: 130 VDVGLKEKEARTLNKGFLKAMQTGLPFVLYKSALTLDGKIATESGDSKWVSNEASRAYVH 189

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR   D I+VG  TV  D+P L CR++  +   P+R+++D   ++ L + ++ ++  AP
Sbjct: 190 RLRDHFDVIMVGSETVRQDNPALNCRID--EGRDPVRLLVDGALQIPLQAAVLASSCTAP 247

Query: 245 VIIVTENDDPVLAL-AFRK-KNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVA 299
            +I T    P+  L A R  +N+ +   D      LK LL  LV RG  S+L+EGG  +A
Sbjct: 248 CLIATTASAPLDKLKALRALENVEVWQYDSPRYVPLKDLLGDLVKRGWNSVLLEGGGGLA 307

Query: 300 HSFINSRLVDSI-ILYRSQIVIGEGGIPSPL 329
            S + ++L+D +  +Y  +++ G+G  PSPL
Sbjct: 308 GSLLRAQLIDEVEFIYAPKLIGGKG--PSPL 336


>gi|295398347|ref|ZP_06808389.1| riboflavin biosynthesis protein RibD [Aerococcus viridans ATCC
           11563]
 gi|294973486|gb|EFG49271.1| riboflavin biosynthesis protein RibD [Aerococcus viridans ATCC
           11563]
          Length = 364

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/328 (36%), Positives = 183/328 (55%), Gaps = 8/328 (2%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67
           +M  AL  +    G T +NP V  +IVK+  +IGRG     G  HAE +AL++A E+   
Sbjct: 4   YMQEALDLAELGQGWTRSNPMVGAVIVKNSQIIGRGYHQQYGGLHAEREALKDANEQGHD 63

Query: 68  -RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            +GAT YVTLEPC H+G++PPC Q IIE GI +VVV   DP+  V+G+G+Q L    I V
Sbjct: 64  VKGATMYVTLEPCCHFGKTPPCTQAIIEGGIEKVVVAAIDPNPLVAGKGIQELRNHHIEV 123

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  ++  E +     +      +R ++T+K A++ D         S  IT  I++  VH 
Sbjct: 124 ETGLLAEESEDLNRKFNYFMTHQRPYVTMKYAMTLDGRTAAYTGDSQWITDKIAREHVHY 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R ++ +I+VGIGTVLADDP LT R++  +  +P+RI+ D   KL L+S+++ TA   P 
Sbjct: 184 QRHRNQSIMVGIGTVLADDPALTVRIDDFEGINPIRIVCDTSLKLPLNSQLVATAKETPT 243

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHS 301
           II T N +P    A++     ++    +D K     L+T L  +G+ S+ VEGG+ +  S
Sbjct: 244 IIATINQNPEDHQAYQAAGCQLLVVKEKDNKVDLLDLITQLGQQGIQSIYVEGGSKLNAS 303

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPL 329
            + + L+  I  Y    VIG     SP+
Sbjct: 304 LLEAGLIQEIHTYIGPKVIGGFDQYSPI 331


>gi|320016370|gb|ADV99941.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 369

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/331 (38%), Positives = 177/331 (53%), Gaps = 22/331 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A    R     TS NP+V C++V+DG ++G G     G PHAEV AL  AGE+
Sbjct: 4   DEFYMARAFELVRLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSHYGR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q GI V
Sbjct: 64  ARGATAYVTLEPCSHYGRTPPCADALVAAGVIRVVAAMQDPNPEVAGRGLYKLKQAGIAV 123

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
            RA+S AIL    TVLADDP LT R   L   +           P++IILD H +++   
Sbjct: 184 FRAESSAILSTSATVLADDPSLTVRWQDLDAETQVLYPHDSVRQPVKIILDSHNRVTPRH 243

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSL 290
           K+I+      +  V  +D P         NI  +    Y +  DL  L+  L  R + S+
Sbjct: 244 KVIQQDGPCWLARVDADDQPW------PGNIEQLLLPRYGNGVDLVVLMMQLGKRNINSV 297

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            VE G  +A + + + +VD +ILY +  ++G
Sbjct: 298 WVEAGPQLAGALLQAGVVDELILYIAPKLLG 328


>gi|120553775|ref|YP_958126.1| riboflavin biosynthesis protein RibD [Marinobacter aquaeolei VT8]
 gi|120323624|gb|ABM17939.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Marinobacter aquaeolei VT8]
          Length = 363

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/342 (37%), Positives = 179/342 (52%), Gaps = 19/342 (5%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGR 84
           T  NP V C+I K  +++G G     G  HAEV+AL +AG EARGATAYVTLEPCSHYGR
Sbjct: 16  THPNPRVGCVIAKGDLIVGEGWHERAGEAHAEVRALSQAGHEARGATAYVTLEPCSHYGR 75

Query: 85  SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLT 143
           +PPCA+ +I+ G+  V     DP+  VSGRGL  L + GI + + +M  E       ++ 
Sbjct: 76  TPPCARALIDAGVAHVFAATKDPNPSVSGRGLDMLREAGIRVTEGVMADEAARLNPGFMK 135

Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203
           R    R  + LK+A S D    MA   S  ITG  ++  V  LRA SDAIL G+GTVLAD
Sbjct: 136 RMNTGRPWVRLKMAASLDGRTAMASGESQWITGPEARADVQRLRAISDAILTGVGTVLAD 195

Query: 204 DPELTCRLNGLQE--------HSPMRIILDPHFKLSLDSKIIKTA----LLAPVIIVTEN 251
           DP LT R + + +          P+R+I D   +    ++I++        A   + +  
Sbjct: 196 DPSLTVRRDEMGDIGDATDPSRQPLRVIADRDARTPATARILQGGNVQVFCASSTLASGP 255

Query: 252 DDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
              + AL        + + D   D+ +LL  L   G+  LLVE G  +A +FI   LVD 
Sbjct: 256 AQDLAALGV--SLTGVAWKDNGVDVAELLDALGELGINELLVEAGPTLAGTFIGENLVDE 313

Query: 311 IILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSD 349
           + LY++ + +G  G P+   PLE    +  +  + R   G D
Sbjct: 314 LWLYQAPVFLGSTGRPTAHLPLETMADKVQWKVLDRRQVGED 355


>gi|145634121|ref|ZP_01789832.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
           PittAA]
 gi|145268565|gb|EDK08558.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
           PittAA]
          Length = 372

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 122/333 (36%), Positives = 185/333 (55%), Gaps = 16/333 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           SS D  FM  AL  +      T+ NPSV C++VK+G ++G G     G PHAE  AL +A
Sbjct: 5   SSQDHVFMQRALDLATKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+G TAYVTLEPCSHYGR+PPCA  +IE G+ +V+  + DP+ +V+G+GL+ LS  G
Sbjct: 65  GENAKGTTAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAG 124

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I     ++  + +     +L R  +    + LK+A+S D    MA   S  ITG  +++ 
Sbjct: 125 IESAVNLLSDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGSDARSD 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231
           V  +RA+S A+L    T++ADDP L  R +   E+            P+R+ILD   ++ 
Sbjct: 185 VQKMRAKSSALLSTSATIIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHRIQ 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
              K+  T   +PV +V+  ++P     F      II      LK+L+  L  R + +L 
Sbjct: 245 PTHKLFLT--YSPVWLVS--NEPRDLTGFPDFCEQIILPKENLLKELMQELGRRQINTLW 300

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           VE GA +A S I+++LVD +I+Y +  ++G+  
Sbjct: 301 VEAGANLAGSLIDAKLVDELIIYVAPKLLGDNA 333


>gi|319786233|ref|YP_004145708.1| riboflavin biosynthesis protein RibD [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464745|gb|ADV26477.1| riboflavin biosynthesis protein RibD [Pseudoxanthomonas suwonensis
           11-1]
          Length = 365

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 124/325 (38%), Positives = 179/325 (55%), Gaps = 6/325 (1%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           +FD   M+ AL+ +   +     NP V C++ KDG V+G G     G PHAEV AL EAG
Sbjct: 7   AFDHACMARALQLAARGLYTARPNPVVGCVVAKDGAVVGEGWHPRAGEPHAEVFALREAG 66

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGATAYVTLEPC+H+GR+PPCA+ +++ G+ RVV  + DP  RV G G   L   GI
Sbjct: 67  ERARGATAYVTLEPCAHHGRTPPCAEALVQAGVARVVAAMRDPFPRVDGAGFARLQAAGI 126

Query: 125 IVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V   +ME + +     +L+R    R  + +K+A S D    MA   S  ITG  ++  V
Sbjct: 127 AVAAGLMEGQARDLNRGFLSRFTRGRPWLRVKLAASLDGRTAMASGESKWITGEAARADV 186

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
              RA+S AIL G  TVLADDP LT RL +      P+R++LD   + SL    ++    
Sbjct: 187 QRWRARSGAILTGADTVLADDPALTVRLGDATPFQPPLRVVLDSRLR-SLAMPRVRDG-S 244

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           AP + +    D V       +   +   D   DL+  L +L GR +  + VE G A+  +
Sbjct: 245 APTLYL-HGPDAVPPPGLDAEFAVVPTRDGHLDLESALRLLAGRDINEVQVEAGPALCGA 303

Query: 302 FINSRLVDSIILYRSQIVIGEGGIP 326
            +++ LVD ++LY++ +V+G+   P
Sbjct: 304 LLHAGLVDELLLYQAPLVLGDTARP 328


>gi|294783803|ref|ZP_06749125.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 1_1_41FAA]
 gi|294479615|gb|EFG27394.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 1_1_41FAA]
          Length = 369

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 124/368 (33%), Positives = 203/368 (55%), Gaps = 14/368 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
            + D +FM+ A+  +   +G  + NP V  ++VKDG +IG G     G PHAEV AL EA
Sbjct: 3   KTVDEKFMARAIELAFRGLGGVNPNPLVGAVVVKDGKIIGEGWHKKYGGPHAEVWALNEA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GEEA+GAT YVTLEPCSH G++PPCA+ I+E GI+R V+   DP+  V+G+G++ +   G
Sbjct: 63  GEEAKGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVIACVDPNPLVAGKGIKIIEDAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I VD  ++E E K     +L     K  ++ LK  ++ D  I      S  IT  +++ +
Sbjct: 123 IKVDFGILEKEAKEVNKVFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNELAREK 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIK 238
           V  LR +  AI+VGI TVL D+P L  RL+    G+++ +P R+++DP+ +  +DSK + 
Sbjct: 183 VQFLRTKFSAIMVGINTVLKDNPSLDSRLDEEKFGIEKRNPFRVVVDPNLESPIDSKFLH 242

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNIN--IIYCDCR--DLKKLLTILVGRGVTSLLVEG 294
                  IIVT ND+  L      +N+   +IY + +   ++ +L  L    + S+L+EG
Sbjct: 243 FN-DNKAIIVTSNDNRNLEKVKEYENLGTRLIYLEGKIFKMEDILKELGKLNIDSVLLEG 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           G+ +  +     ++D+  ++ +  +IG+     P   G+   NF  +   +  S+     
Sbjct: 302 GSGLISTAFKENVIDAGEIFIAPKIIGDNS-SIPFISGF---NFNSMEEVFKLSNPKFNI 357

Query: 355 IGKNLCLQ 362
            G N+ ++
Sbjct: 358 YGDNISIE 365


>gi|229191491|ref|ZP_04318474.1| Riboflavin biosynthesis protein [Bacillus cereus ATCC 10876]
 gi|228591971|gb|EEK49807.1| Riboflavin biosynthesis protein [Bacillus cereus ATCC 10876]
          Length = 350

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 124/342 (36%), Positives = 188/342 (54%), Gaps = 14/342 (4%)

Query: 23  GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
           G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARG T YVTLEPCSH+
Sbjct: 3   GQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGGTIYVTLEPCSHH 62

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAY 141
           GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  + E E K     +
Sbjct: 63  GRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEVF 122

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
               + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R ++ AILVG  TV 
Sbjct: 123 NKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTVQ 182

Query: 202 ADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
            D+P LT R+ NG    +P+R+ILD   ++ +++ ++        I  T N       A 
Sbjct: 183 KDNPSLTTRIPNG---RNPIRVILDSTLRIPMEANVVTDREAPTWIFTTSNHAEEKKKAL 239

Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
               + +         +L ++L +L  +GV+SLL+EGG  V  SFI ++L+D IILY + 
Sbjct: 240 ENAGVKVFVTSGEKHINLHEMLDVLGEKGVSSLLIEGGGEVNASFIENKLMDKIILYFAP 299

Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFG-SDVCLEYIGKN 358
            +IG    PS     ++E N +   +D     D+    IGK+
Sbjct: 300 KIIGGRLAPS-----FVEGNGITKMKDAIEFKDISFTQIGKD 336


>gi|84515381|ref|ZP_01002743.1| riboflavin biosynthesis protein RibD [Loktanella vestfoldensis
           SKA53]
 gi|84510664|gb|EAQ07119.1| riboflavin biosynthesis protein RibD [Loktanella vestfoldensis
           SKA53]
          Length = 359

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 133/329 (40%), Positives = 192/329 (58%), Gaps = 14/329 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DAR+M+ AL+  R  +G    NP+V C+IV  G ++GRG T  GG PHAE  AL +AG +
Sbjct: 3   DARYMALALQLGRRGMGRVWPNPAVGCVIVNHGRIVGRGWTQDGGRPHAETVALAQAGPD 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GAT YVTLEPC+H+G++PPCA  +I  G+ RVVV + DPD RV+GRG+  L Q GI V
Sbjct: 63  ACGATVYVTLEPCAHHGQTPPCAAALIAAGVARVVVALGDPDARVAGRGIALLEQAGIAV 122

Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  + ++     HA +L+R    R  +TLK+A + D  I  A   S  ITG  ++  VH+
Sbjct: 123 ETGLLADQARADHAGFLSRITAARPFVTLKLAGTLDGRIATASGESQWITGTEARRAVHM 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +RA+ DA+LVG GTV ADDP L+ R  G+    P+RI++    KL L S++ +TA  +PV
Sbjct: 183 MRARHDAVLVGAGTVRADDPALSVRGLGIPRQ-PVRIVVSRAVKLPLTSQLAQTARQSPV 241

Query: 246 IIVTENDDPV---LALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298
            I    +  V   LAL         + C  R    + + ++  L   G+T +  EGG  +
Sbjct: 242 WICHGAEADVADWLALGAVS-----LPCAVRAGQVEPEAMMQALASAGITRVFCEGGGML 296

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           A S + + LVD +++  +   IG  G P+
Sbjct: 297 AASLLGAGLVDDLVVMTAGCAIGAEGTPA 325


>gi|237739215|ref|ZP_04569696.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium sp. 2_1_31]
 gi|229423815|gb|EEO38862.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium sp. 2_1_31]
          Length = 369

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 203/368 (55%), Gaps = 14/368 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
            + D +FM+ A+  +   +G  + NP V  ++VKDG +IG G     G PHAEV AL EA
Sbjct: 3   KTVDKKFMARAIELAFRGLGGVNPNPLVGAVVVKDGKIIGEGWHKKYGGPHAEVWALNEA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GEEA+GAT YVTLEPCSH G++PPCA+ I+E GI+R V+   DP+  V+G+G++ +   G
Sbjct: 63  GEEAKGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVIACIDPNPLVAGKGIKIIEDAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I VD  ++E E K     +L     K  ++ LK  ++ D  I      S  IT  +++ +
Sbjct: 123 IKVDLGILEKEAKEVNKVFLKYIENKIPYLFLKCGITLDGKIATRRGKSKWITNELAREK 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIK 238
           V  LR +  AI+VGI TVL D+P L  RL+    G+++ +P R+++DP+ +  +DSK + 
Sbjct: 183 VQFLRTKFSAIMVGINTVLKDNPSLDSRLDEEKFGIEKRNPFRVVVDPNLESPIDSKFLH 242

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNIN--IIYCDCR--DLKKLLTILVGRGVTSLLVEG 294
                  IIVT ND+  L      +N+   +IY + +   +K +L  L    + S+L+EG
Sbjct: 243 FN-DNKAIIVTSNDNRNLEKVKEYENLGTRLIYLEGKIFKMKDILKELGKLNIDSVLLEG 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           G+ +  +     ++D+  ++ +  +IG+     P   G+   NF  +   +  S+     
Sbjct: 302 GSGLISTAFKENVIDAGEIFIAPKIIGDNS-SIPFINGF---NFDSMEEVFKLSNPKFNI 357

Query: 355 IGKNLCLQ 362
            G N+ ++
Sbjct: 358 YGDNISVE 365


>gi|228998898|ref|ZP_04158483.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides Rock3-17]
 gi|228760914|gb|EEM09875.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides Rock3-17]
          Length = 370

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 116/324 (35%), Positives = 179/324 (55%), Gaps = 4/324 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 3   DQEYMRIALQLAQSTAGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALRMAGDK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A G+T YVTLEPCSH+G++PPC   +IE  ++RVV+   D +  VSG G + L + GI +
Sbjct: 63  ANGSTVYVTLEPCSHFGKTPPCCDLLIEKKVKRVVIATLDCNPLVSGSGAKRLQKAGISV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E       +      K   +T+K A+S D  I      S  ITG +++  VH 
Sbjct: 123 TTSVLEEEATALNRYFFHYMKTKLPFVTIKTAMSLDGKIATTTGESKWITGEVARTDVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAIL+G+ TV+AD+P LT RL    +H P+RIILD H +  L S +I   +    
Sbjct: 183 YRHTHDAILIGVNTVIADNPSLTTRLPNGGKH-PIRIILDTHLRTPLSSHVITDEMAPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +      +  + ++++       +++ LL +L  + + SL VEGG +V  SF+
Sbjct: 242 IIVGKDVNKEKIAGYESQAVSVLQMKTSQIEIRDLLLLLGEKQILSLFVEGGQSVHASFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327
            ++  + I+ Y S  +IG    P+
Sbjct: 302 ETKCFNEIVTYISPKLIGGKDAPT 325


>gi|114765495|ref|ZP_01444605.1| riboflavin biosynthesis protein RibD [Pelagibaca bermudensis
           HTCC2601]
 gi|114542205|gb|EAU45236.1| riboflavin biosynthesis protein RibD [Roseovarius sp. HTCC2601]
          Length = 350

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/305 (41%), Positives = 176/305 (57%), Gaps = 7/305 (2%)

Query: 28  NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87
           NP+V C+IVKDG V+GRG TA GG PHAE QAL +AGE ARGATAYVTLEPCSH+G++PP
Sbjct: 7   NPAVGCVIVKDGRVVGRGATAPGGRPHAEPQALAQAGEAARGATAYVTLEPCSHHGKTPP 66

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA-YLTRQV 146
           CA+ +++ G+ RVV  + D D RVSG+G   L + GI V   + +E     HA +  R  
Sbjct: 67  CAEALVKSGVARVVAPLADNDARVSGQGFAHLRKHGIEVTTGVLAEDAARDHAGFFLRND 126

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             R  +TLK+A S D  I  A   S  ITG  ++  VH LRA  DA++VG GT  ADDP 
Sbjct: 127 HGRPLVTLKLANSFDGRIATATGESQWITGPEARRYVHGLRASHDAVMVGAGTARADDPA 186

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA-LAFRKKNI 265
           LT R  G +   P+R+I+     + L S +  +A   PV +   +D   +   A++    
Sbjct: 187 LTVRGWG-EVQQPVRVIVSRLIDVPLMSTLASSAREVPVWLAHGSDAASMTKRAWQSCGA 245

Query: 266 NIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            ++ C       D   LL+ L   G+T +  EGG  +A S + + LVD ++ + + I +G
Sbjct: 246 KLLQCKVSGGRIDPHALLSALGKEGLTRVFCEGGGQLAASLLAADLVDELVGFTAGIAVG 305

Query: 322 EGGIP 326
             G P
Sbjct: 306 AEGRP 310


>gi|221639820|ref|YP_002526082.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5- phosphoribosylamino)uracil reductase
           [Rhodobacter sphaeroides KD131]
 gi|221160601|gb|ACM01581.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5- phosphoribosylamino)uracil reductase
           [Rhodobacter sphaeroides KD131]
          Length = 362

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 132/324 (40%), Positives = 190/324 (58%), Gaps = 7/324 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DA  M+ ALR     +G T  NP+V C+IVK G V+GRG T  GG PHAE  AL +AG  
Sbjct: 3   DADHMAHALRLGARGLGRTWPNPAVGCVIVKAGRVVGRGWTCPGGRPHAEPVALAQAGAA 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GATAYVTLEPCSH+GR+PPCA+ +I  G+ RVV    DPD RVSGRG   L + GI +
Sbjct: 63  ALGATAYVTLEPCSHHGRTPPCAEALIAAGLARVVTATGDPDPRVSGRGHAMLREAGIAV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
            +R++E+E +     +L R  E    +TLK+A + D  I  A   S  ITG +++  VH 
Sbjct: 123 TERVLEAEARTAHAGFLKRVTEGLPFVTLKLAATVDGRIATASGESRWITGSLARRAVHA 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +R + DA++VG+GT +ADDP+L+ R  G   H P+RI++D   + + DS++ +TA   PV
Sbjct: 183 MRMRHDAVMVGVGTAIADDPDLSVRDLG-SGHQPVRIVVDSLLRHAPDSRLGRTARQVPV 241

Query: 246 IIVTENDDPVLALAFRKKNINIIY-C----DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
            +      P  A A    +  I+  C    D  + + +L  L   G+T +  EGGA +  
Sbjct: 242 WLCHGPAAPEAARAAWAASGAILLECPAGPDGLEAEAVLRRLAAEGLTRIFCEGGARLGA 301

Query: 301 SFINSRLVDSIILYRSQIVIGEGG 324
           + + + L D ++ + +  +IGE G
Sbjct: 302 ALVRAGLCDELVTFTAGKLIGEEG 325


>gi|83648598|ref|YP_437033.1| riboflavin biosynthesis protein RibD [Hahella chejuensis KCTC 2396]
 gi|83636641|gb|ABC32608.1| riboflavin biosynthesis protein RibD [Hahella chejuensis KCTC 2396]
          Length = 362

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 120/327 (36%), Positives = 180/327 (55%), Gaps = 16/327 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ ALR +   +  T  NP V C++VK+G+++G G     G  HAEV AL  AGE ARGA
Sbjct: 1   MARALRLAERGLYTTDPNPRVGCVLVKEGVIVGEGWHERAGEGHAEVNALRAAGESARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129
             YVTLEPCSHYGR+PPCA+ +++ G+RRV+  ++DP+  V+G+GL  L   G+  +   
Sbjct: 61  DCYVTLEPCSHYGRTPPCAEALVKAGVRRVIAAMEDPNPSVAGKGLALLRGAGVESEVGC 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M +E       +  R  + R  + +K+A S D    +    S  ITG  ++  V  LRA+
Sbjct: 121 MAAEAYELNLGFFKRMSDGRPWVRVKVASSLDGRSALHNGVSKWITGAAAREDVQKLRAR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE------HSPMRIILDPHFKLSLDSKIIKTALLA 243
           S A++ GIGT++AD+P L  R   L++        PMR+ LD   +   DS ++K  L  
Sbjct: 181 SSAVITGIGTIIADNPSLNVRGPELEQACNGKLRQPMRVALDSQLRFPADSNMLK--LPG 238

Query: 244 PVIIVTENDDPVLALAFRKKN------INIIYCDCR-DLKKLLTILVGRGVTSLLVEGGA 296
            +++V   D     LA R+ +      + +   + R DLK LL+ L  R    +LVE GA
Sbjct: 239 KILLVACTDPSEGWLAQRQSSGADLEVLKLAGENGRIDLKALLSTLAARECNEVLVEAGA 298

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +A +F+   L D I  Y +  ++GEG
Sbjct: 299 NLAGAFVAQGLADEIWTYTAPKLMGEG 325


>gi|229110810|ref|ZP_04240373.1| Riboflavin biosynthesis protein [Bacillus cereus Rock1-15]
 gi|228672689|gb|EEL27970.1| Riboflavin biosynthesis protein [Bacillus cereus Rock1-15]
          Length = 348

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 123/338 (36%), Positives = 186/338 (55%), Gaps = 18/338 (5%)

Query: 23  GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
           G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ RGAT YVTLEPCSH+
Sbjct: 3   GQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQVRGATIYVTLEPCSHH 62

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAY 141
           GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  + E E K     +
Sbjct: 63  GRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKVNEVF 122

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
               + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R ++ AILVG  TV 
Sbjct: 123 NKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRNENAAILVGANTVQ 182

Query: 202 ADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
            D+P LT R+ NG    +P+RIILD   ++ +++ ++        I  T N      +A 
Sbjct: 183 KDNPSLTTRIPNG---RNPIRIILDSTLRIPMEANVVTDGEAPTWIFTTSNHAAKKKIAL 239

Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
               + +         +L ++L +L  +GV+SLL+EGG  V  SFI ++L+D +ILY + 
Sbjct: 240 ENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIENKLMDKLILYVAP 299

Query: 318 IVIGEGGIPSPLEEGYLEK----------NFMCVRRDY 345
            +IG    PS +E   + K          +F  V +DY
Sbjct: 300 KIIGGRLAPSFVEGTGITKMQDAIEFKDVSFTQVGKDY 337


>gi|326793810|ref|YP_004311630.1| riboflavin biosynthesis protein RibD [Marinomonas mediterranea
           MMB-1]
 gi|326544574|gb|ADZ89794.1| riboflavin biosynthesis protein RibD [Marinomonas mediterranea
           MMB-1]
          Length = 383

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 122/331 (36%), Positives = 188/331 (56%), Gaps = 13/331 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
            +MS A++ ++  +  T  NP V C+IVKD  +IG G  A  G  HAEV AL  A E   
Sbjct: 10  EYMSQAVQLAKKGLYTTHPNPRVGCVIVKDDRIIGEGFHARAGEGHAEVNALASAMESVE 69

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GATAYVTLEPCSH G++PPCA  +I+ GI  VV  + DP+ +V+GRGL  L + G+ ++ 
Sbjct: 70  GATAYVTLEPCSHQGKTPPCADALIKAGIAVVVYGMQDPNPQVAGRGLAKLEKAGVQVIG 129

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++E+E +     +  R  E   +I LK+A+S D    M    S  ITG  ++  V  LR
Sbjct: 130 PVLENECERLNLGFNKRMREGLPYIRLKMAMSLDGRTAMESGESQWITGSAARLDVQRLR 189

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEH-------SPMRIILDPHFKLSLDSKIIKTA 240
           AQSDAI+ GIG+V+ D+P +T R++   +         P+R+I+D    +  ++KI+K  
Sbjct: 190 AQSDAIVTGIGSVILDNPSMTVRIDSDDQEVDSKSVRQPLRVIMDTALSIPPEAKILKPG 249

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYC----DCR-DLKKLLTILVGRGVTSLLVEGG 295
             A +  V E+ +     A +K  +NI +     D R DL + + +L  +G+  +LVE G
Sbjct: 250 KEALMFCVEEDIEQEHFDALKKTGVNIEFAPVGEDGRMDLIECMGLLADQGINEVLVETG 309

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           A +A +F+   LVD +++Y +  ++G    P
Sbjct: 310 AELAGAFLREGLVDELVVYVAPKLLGSDARP 340


>gi|188584764|ref|YP_001916309.1| riboflavin biosynthesis protein RibD [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349451|gb|ACB83721.1| riboflavin biosynthesis protein RibD [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 380

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 129/372 (34%), Positives = 200/372 (53%), Gaps = 24/372 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M  AL  +    G T+ NP V  ++VK+  ++ +G     G PHAE  ALE+AG E
Sbjct: 8   DRQYMDRALDLAWKGWGKTNPNPLVGAVLVKNDDIVAQGYHGRLGGPHAEAVALEKAGRE 67

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A G T YVTLEPC HYG++PPC   IIE G++RVV+   DP  +++G+G++ L Q GI V
Sbjct: 68  ASGTTMYVTLEPCCHYGKTPPCTDKIIEAGVKRVVIASLDPHEKMAGKGVKKLRQAGIKV 127

Query: 127 DRMM-----ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           +  +     E + +IF    +T       ++  K  +S D  I      S  IT   ++ 
Sbjct: 128 EVGLKKAEAEKQNEIFRKYIVT----GLPYMIGKWGMSLDGKIATHTGDSRWITSEKARF 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
             H LRA+  AI+VGIGTV ADDP LTCR        P+RI++D H +LSL SK+++   
Sbjct: 184 DTHRLRARVAAIMVGIGTVKADDPLLTCRHPNYPGQHPVRIVVDSHLRLSLQSKVLEKIS 243

Query: 242 LAPVIIVT----ENDDPVLALAFRKKNI--NIIYCDCR-----DLKKLLTILVGRGVTSL 290
             P II T    ++    + +A + +N+   ++Y         D+ +L+ +L  RG+ S+
Sbjct: 244 ETPTIIATSEEIKHKSKEMEIAKQIENLGGEVLYLPQTSTGKVDIFELVKLLGQRGLDSV 303

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
           LVEGG  +  S I +   D  I+Y   +VIG    P+P+      K F  ++     +++
Sbjct: 304 LVEGGETLHGSLIEANYYDKYIVYLGNLVIGGTNSPTPVG----GKGFQALKDSVMLNNM 359

Query: 351 CLEYIGKNLCLQ 362
             EY G ++ ++
Sbjct: 360 EYEYFGDSIRIE 371


>gi|195952880|ref|YP_002121170.1| riboflavin biosynthesis protein RibD [Hydrogenobaculum sp. Y04AAS1]
 gi|195932492|gb|ACG57192.1| riboflavin biosynthesis protein RibD [Hydrogenobaculum sp. Y04AAS1]
          Length = 357

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 111/318 (34%), Positives = 172/318 (54%), Gaps = 2/318 (0%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  +  + G T  NP+V  LIVKD  ++  G     G  HAE+ AL+ A E+
Sbjct: 5   DKYYMKLALEEAYKYKGQTHPNPAVGVLIVKDDKILSIGAHKKAGTDHAEIVALKNAQED 64

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            +GAT YVTLEPCS +G++PPC   II  GI++VV+   DP+ +VSG+G++WL   GI V
Sbjct: 65  VKGATMYVTLEPCSFHGKTPPCCPAIISSGIKKVVIGSVDPNPKVSGKGIEWLKSAGIEV 124

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  +++ E       +     +KR  ITLK A+S D  +      S  I+   ++   H+
Sbjct: 125 EVGVLKEECDKLNEDFFVYITQKRPFITLKCAMSLDGKLAKENKDSKWISSEKARKISHI 184

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R  S AILVGI T+L D+P+LT RL G  E+ P  +++DP+  +  D+ I K      +
Sbjct: 185 YRKYSSAILVGINTILKDNPKLTVRLEG-NEYQPYSVVIDPNLDIPYDANIFKKGYENII 243

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           IIV+   D       +   + ++  +  D+K +L  L    +  + VEGGA     F+  
Sbjct: 244 IIVSTKTDDKKKEYLKSLGVRLLELESFDIKSILKALYEIDIMHIFVEGGAYTISRFLEE 303

Query: 306 RLVDSIILYRSQIVIGEG 323
            + D ++++R    IG+G
Sbjct: 304 NMWDKMLIFRGYKFIGKG 321


>gi|228992853|ref|ZP_04152778.1| RibD (Riboflavin-specific deaminase) [Bacillus pseudomycoides DSM
           12442]
 gi|228766902|gb|EEM15540.1| RibD (Riboflavin-specific deaminase) [Bacillus pseudomycoides DSM
           12442]
          Length = 373

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 117/324 (36%), Positives = 179/324 (55%), Gaps = 4/324 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 6   DQEYMRIALQLAQSTAGQTSPNPMVGAVVVKDGNIVGMGAHLLAGEEHAEVHALRMAGDK 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A G+T YVTLEPCSH+G++PPC   +IE  ++RVV+   D +  VSG G + L + GI V
Sbjct: 66  ANGSTVYVTLEPCSHFGKTPPCCDLLIEKKVKRVVIATLDCNPLVSGSGAKRLQKAGISV 125

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E       +      K   +T+K A+S D  I      S  ITG +++  VH 
Sbjct: 126 TTGVLEEEATALNRYFFHYMKTKLPFVTIKTAMSLDGKIATTTGESKWITGEVARTDVHQ 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAIL+G+ TV+AD+P LT RL    +H P+RIILD H +  L S +I   +    
Sbjct: 186 YRHTHDAILIGVNTVIADNPSLTTRLPNGGKH-PIRIILDTHLRTPLSSHVITDEMAPTW 244

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +      +  + ++++       +++ LL +L  + + SL VEGG +V  SF+
Sbjct: 245 IIVGKDVNKEKIAGYESQAVSVLQMKTSQIEIRDLLLLLGEKQILSLFVEGGQSVHASFL 304

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327
            ++  + I+ Y S  +IG    P+
Sbjct: 305 ETKCFNEIVTYISPKLIGGKDAPT 328


>gi|67078030|ref|YP_245650.1| riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (riboflavin-specific deaminase) and
           5-amino-6-(5-phosphoribosylamino)uracil reductase)
           [Bacillus cereus E33L]
 gi|66970336|gb|AAY60312.1| riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (riboflavin-specific deaminase) and
           5-amino-6-(5-phosphoribosylamino)uracil reductase)
           [Bacillus cereus E33L]
          Length = 367

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 127/356 (35%), Positives = 197/356 (55%), Gaps = 16/356 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL  ++   G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARG
Sbjct: 7   YMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
            T YVTLEPCSH+GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  
Sbjct: 67  GTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVG 126

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + E + K     +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R 
Sbjct: 127 VCEEKSKKMNEVFNKYIMTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRN 186

Query: 189 QSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV-I 246
           ++ AILVG  TV  D+P LT R+ NG    +P+R+ILD   ++ +++ ++ T + AP  I
Sbjct: 187 ENAAILVGANTVQKDNPSLTTRIPNG---RNPIRVILDSTLRIPMEANVV-TDVEAPTWI 242

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
             T N       A     + +         +L ++L +L  +GV+SLL+EGG  V  SFI
Sbjct: 243 FTTSNHAAEKRKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFI 302

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG-SDVCLEYIGKN 358
            ++L+D +ILY +  +IG    PS     ++E   +   +D     D+    IGK+
Sbjct: 303 ENKLMDKLILYFAPKIIGGRLAPS-----FVEGTGITKMQDAIEFKDISFTQIGKD 353


>gi|71735090|ref|YP_276623.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555643|gb|AAZ34854.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320322801|gb|EFW78894.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330413|gb|EFW86392.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330874037|gb|EGH08186.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 378

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 128/346 (36%), Positives = 182/346 (52%), Gaps = 33/346 (9%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ D  +M+ AL  +R  +  T  NP V C+IV+DG ++G G     G PHAEV AL +
Sbjct: 5   LAALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQ 64

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH GR+PPCA  ++  G+ RVV  + DP+  VSGRGL  L   
Sbjct: 65  AGELARGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPEVSGRGLLRLMNA 124

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V   ++ESE +     +L R    + +I +K+A+S D    MA   S  ITG  +++
Sbjct: 125 GIGVQCGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARS 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRAQS  +L G  TVLAD   LT R + L              P+R+++D   ++ 
Sbjct: 185 AVQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLRVP 244

Query: 232 LDSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
           LD+   +       ++VT           E    +LALA    ++        DL+KL+ 
Sbjct: 245 LDAPFFQA---GSALVVTCAAASARGRYQEEGHEMLALADSAGHV--------DLRKLMG 293

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            L  RGV  +LVE G  +A +F    LVD   ++ +   +G    P
Sbjct: 294 ELATRGVNEVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARP 339


>gi|332977386|gb|EGK14164.1| riboflavin biosynthesis protein RibD [Desmospora sp. 8437]
          Length = 368

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 125/361 (34%), Positives = 194/361 (53%), Gaps = 16/361 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D R+M  ALR +    G TS NP V  ++VKDG ++G G     G PHAEV ALE+AG+ 
Sbjct: 8   DERWMELALRLAEAARGQTSPNPLVGAVVVKDGQLLGSGAHLKAGTPHAEVHALEQAGKS 67

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+G+T YVTLEPC+HYGR+PPC +  I  G+RRVVV   DPD  VSG+G+Q L + G+ V
Sbjct: 68  AKGSTLYVTLEPCNHYGRTPPCTERTISSGVRRVVVGSTDPDPLVSGKGVQRLREAGLSV 127

Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              + ++    L+ AY   +      +TLK AV+ D     +   S  +TG  ++ +VH 
Sbjct: 128 KTGVLADRCTRLNEAYFHHRRTGFPFVTLKAAVTLDGKTATSDGDSRWVTGEAAREEVHR 187

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR Q DA+LVG GT L D P+LT RL G  ++ P+R+++D   ++ L+S +      +  
Sbjct: 188 LRHQYDAVLVGSGTALHDRPQLTVRLPGGGKN-PLRVVVDSRLRMPLNSPLADVESASTW 246

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL--VGR-GVTSLLVEGGAAVAHSF 302
           +  T+  D     A   + + +         KL ++   +GR G+ S+L E G  +  S 
Sbjct: 247 VFCTDEADSGREAALTARGVRVYRTGAGPRVKLESVFRRLGREGIVSVLTESGGELNASL 306

Query: 303 INSRLVDSIILYRSQIVIG--------EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           +    V+ ++ + +  ++G         G     +++  L ++   V  D FG D+C+  
Sbjct: 307 LREGWVNKVMFFIAPKILGGRDSLTAVGGTTVDQMKDALLLED---VSVDLFGRDICVTG 363

Query: 355 I 355
           I
Sbjct: 364 I 364


>gi|229145969|ref|ZP_04274348.1| Riboflavin biosynthesis protein [Bacillus cereus BDRD-ST24]
 gi|228637577|gb|EEK94028.1| Riboflavin biosynthesis protein [Bacillus cereus BDRD-ST24]
          Length = 348

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 118/310 (38%), Positives = 176/310 (56%), Gaps = 8/310 (2%)

Query: 23  GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
           G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARGAT YVTLEPCSH+
Sbjct: 3   GQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGATIYVTLEPCSHH 62

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAY 141
           GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  + E E K     +
Sbjct: 63  GRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEVF 122

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
               + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R ++ AILVG  TV 
Sbjct: 123 NKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRNENAAILVGANTVQ 182

Query: 202 ADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
            D+P LT R+ NG    +P+RIILD   ++ +++ ++        I  T N       A 
Sbjct: 183 KDNPSLTTRIPNG---RNPIRIILDSTLRIPMEANVVTDGEAPTWIFTTSNHAAKKKKAL 239

Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
               + +         +L ++L +L  +GV+SLL+EGG  V  SFI ++L+D +ILY + 
Sbjct: 240 ENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIENKLMDKLILYVAP 299

Query: 318 IVIGEGGIPS 327
            +IG    PS
Sbjct: 300 KIIGGRLAPS 309


>gi|218232159|ref|YP_002368101.1| riboflavin biosynthesis protein RibD [Bacillus cereus B4264]
 gi|218160116|gb|ACK60108.1| riboflavin biosynthesis protein RibD [Bacillus cereus B4264]
          Length = 367

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 125/355 (35%), Positives = 192/355 (54%), Gaps = 14/355 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL  ++   G T+ NP V  +IV D  ++G G     G  HAE+ A+  AGE+ARG
Sbjct: 7   YMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGESHAEIHAIRMAGEQARG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
            T YVTLEPCSH+GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  
Sbjct: 67  GTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVG 126

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + E E K     +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R 
Sbjct: 127 VCEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRN 186

Query: 189 QSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           ++ AILVG  TV  D+P LT R+ NG    +P+R+ILD   ++ +++ ++        I 
Sbjct: 187 ENAAILVGANTVQKDNPSLTTRIPNG---RNPIRVILDSTLRIPMEANVVTDREAPTWIF 243

Query: 248 VTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
            T N       A     + +         +L ++L +L  +GV+SLL+EGG  V  SFI 
Sbjct: 244 TTSNHAEEKKKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIE 303

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG-SDVCLEYIGKN 358
           ++L+D IILY +  +IG    PS     ++E   +   +D     D+    IGK+
Sbjct: 304 NKLMDKIILYFAPKIIGGRLAPS-----FVEGTGITKMKDAIEFKDISFTQIGKD 353


>gi|322807186|emb|CBZ04760.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Clostridium
           botulinum H04402 065]
          Length = 365

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 122/361 (33%), Positives = 196/361 (54%), Gaps = 23/361 (6%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL+ +    G  + NP V  ++VK+  +IG G   Y G PHAEV AL EAGE A+G
Sbjct: 7   YMEKALKLAERGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGPHAEVYALREAGERAKG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           AT YVTLEPCSHYG++PPCA+ I++ GI + ++ + DP+  V GRG+  L Q GI +V  
Sbjct: 67  ATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVTG 126

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +ME E K     ++    +K+  + LK A + D  I      S  ITG  ++ +VH +R 
Sbjct: 127 IMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATKTGESKWITGEEARYKVHQIRN 186

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
               I+VGIGT++ D+P L  R+   +  SP  II+D   ++ L+SKI++T     + I 
Sbjct: 187 DLSGIMVGIGTIIKDNPLLNTRIE--RGRSPKAIIVDSSLRIPLESKILETLNERTIYIA 244

Query: 249 T--ENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAHS 301
           T  ++ +P    A       ++  +  +     L +L+  L   GV S+L+EGG+ +  S
Sbjct: 245 TTKKHKNPSKKNALENLGAKVLEFEENEEGKVPLNELMQYLGSEGVDSILLEGGSTLNFS 304

Query: 302 FINSRLVDSIILY---------RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +   +VD ++ +          S+ +IG  G+ S L++ +   N   ++ +  G D+ +
Sbjct: 305 ALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVES-LKDIF---NLQNLKFEKIGQDILI 360

Query: 353 E 353
           E
Sbjct: 361 E 361


>gi|319775121|ref|YP_004137609.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae F3047]
 gi|329122965|ref|ZP_08251536.1| riboflavin biosynthesis protein RibD [Haemophilus aegyptius ATCC
           11116]
 gi|317449712|emb|CBY85919.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae F3047]
 gi|327471896|gb|EGF17336.1| riboflavin biosynthesis protein RibD [Haemophilus aegyptius ATCC
           11116]
          Length = 372

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 124/333 (37%), Positives = 185/333 (55%), Gaps = 16/333 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           SS D  FM  AL  +      T+ NPSV C++VK+G ++G G     G PHAE  AL +A
Sbjct: 5   SSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATAYVTLEPCSHYGR+PPCA  +IE G+ +V+  + DP+ +V+G+GL+ LS  G
Sbjct: 65  GENAKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAG 124

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I     ++  + +     +L R  +    + LK+A+S D    MA   S  ITG  +++ 
Sbjct: 125 IESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDARSD 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231
           V  +RA+S A+L    TV+ADDP L  R +   E+            P+R+ILD   ++ 
Sbjct: 185 VQKMRAKSSALLSTSTTVIADDPSLNIRWDEFPENLKTEYKKEGLRQPVRVILDSQHRIQ 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
              K+  T   +PV +V+   +P     F      II      LK+L+  L  R + +L 
Sbjct: 245 PTHKLFLTH--SPVWLVS--SEPRDLTGFPDFCEQIILPKENLLKELMRELGKRQINTLW 300

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           VE GA +A S I+++LVD +I+Y +  ++G+  
Sbjct: 301 VEAGANLAGSLIDAKLVDELIIYIAPKLLGDNA 333


>gi|152976519|ref|YP_001376036.1| riboflavin biosynthesis protein RibD [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025271|gb|ABS23041.1| riboflavin biosynthesis protein RibD [Bacillus cytotoxicus NVH
           391-98]
          Length = 370

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 118/325 (36%), Positives = 183/325 (56%), Gaps = 6/325 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++VK+G ++G G     G  HAEV AL  AG  
Sbjct: 3   DQEYMKIALQLAQSTAGQTSPNPMVGAVVVKNGKIVGMGAHLRAGEEHAEVHALRMAGAH 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YVTLEPCSH+G++PPC   +I+  ++RVV+   D +  V+G G + L + GI V
Sbjct: 63  AKGATVYVTLEPCSHFGKTPPCCNLLIQKKVKRVVIATLDSNPLVAGNGKKKLEEAGIYV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E +     +      KR  +TLK A+S D  I      S  ITG  +++ VH 
Sbjct: 123 TTGILEEEARSLNRYFFHYMKTKRPFVTLKTAMSLDGKIATTTGESKWITGDAARDDVHH 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            R   DAILVG+ T++AD+P LT RL NG +  +P+RIILD H +  L S ++   +   
Sbjct: 183 YRHTHDAILVGVNTIIADNPSLTTRLPNGGK--NPIRIILDTHLRTPLLSHVVTDRVAPT 240

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            IIV +N      L +  +++++   +    +++ LL++L  + + SL VEGG ++  SF
Sbjct: 241 WIIVGKNVQKDQILQYESEHVSVFQMNRGRIEIQDLLSLLGEKQILSLFVEGGQSIHASF 300

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327
           + +   + I+ Y S  +IG    P+
Sbjct: 301 LEANGFNEIVTYISPKLIGGKDAPT 325


>gi|296504605|ref|YP_003666305.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
           thuringiensis BMB171]
 gi|296325657|gb|ADH08585.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
           thuringiensis BMB171]
          Length = 370

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 127/369 (34%), Positives = 195/369 (52%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AG+ 
Sbjct: 3   DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 63  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+    +H P+R++LD H +    S +I   L    
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVVLDTHLRTPPSSHVITDGLAPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 242 IIVGKDVKEEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK--NFMCVR---RDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG    P+        K  N + ++       G D+ +    +N
Sbjct: 302 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQNALSLKIQEMKQIGDDIKIVANARN 361

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 362 EVTKCLQEL 370


>gi|16272881|ref|NP_439104.1| riboflavin biosynthesis protein [Haemophilus influenzae Rd KW20]
 gi|260580033|ref|ZP_05847863.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae RdAW]
 gi|1172932|sp|P44326|RIBD_HAEIN RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
           RecName:
           Full=Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase; Includes: RecName:
           Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|1573964|gb|AAC22598.1| riboflavin biosynthesis protein (ribD) [Haemophilus influenzae Rd
           KW20]
 gi|260093317|gb|EEW77250.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae RdAW]
          Length = 372

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 122/333 (36%), Positives = 186/333 (55%), Gaps = 16/333 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           SS D  FM  AL  +      T+ NPSV C++VK+G ++G G     G PHAE  AL +A
Sbjct: 5   SSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATAYVTLEPC+HYGR+PPCA  +IE G+ +V+  + DP+ +V+G+GL+ LS  G
Sbjct: 65  GENAKGATAYVTLEPCAHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAG 124

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I     ++  + +     +L R  +    + LK+A+S D    MA   S  ITG  +++ 
Sbjct: 125 IESTVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDARSD 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231
           V  +RA+S A+L    TV+ADDP L  R +   E+            P+R+ILD   ++ 
Sbjct: 185 VQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPENLKTEYKKEWLRQPVRVILDSQHRIQ 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
              K+  T   +PV +V+   +P     F      II+     LK+L+  L  R + +L 
Sbjct: 245 PTHKLFLTH--SPVWLVS--SEPRDLTGFPDFCEQIIFPKENLLKELMRELGKRQINTLW 300

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           VE GA ++ S I+++LVD +I+Y +  ++G+  
Sbjct: 301 VEAGANLSGSLIDAKLVDELIIYIAPKLLGDNA 333


>gi|330505155|ref|YP_004382024.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pseudomonas
           mendocina NK-01]
 gi|328919441|gb|AEB60272.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pseudomonas
           mendocina NK-01]
          Length = 371

 Score =  203 bits (516), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 129/341 (37%), Positives = 182/341 (53%), Gaps = 23/341 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S  D  FM+ ALR +R  +  T  NP V C+IV+DG ++G G  A  G PHAEV AL +
Sbjct: 1   MSEHDQLFMARALRLARKGLYSTHPNPRVGCVIVRDGEIVGEGWHARAGEPHAEVHALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG++ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+ +V+G GL  L   
Sbjct: 61  AGDKARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPQVAGNGLLRLMNA 120

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V   ++ESE +     ++ R       + +K A+S D    MA   S  ITG  ++ 
Sbjct: 121 GIEVRSGVLESEARALNAGFIKRMETGLPFVRVKSAMSLDGRTAMASGESQWITGPAARA 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
           +V  LRAQS  +L G  TVLADD  LT R + L          Q   P+R+++D   ++ 
Sbjct: 181 EVQRLRAQSSVVLSGADTVLADDARLTVRPDELGLGAELTALAQRRPPLRVLVDGRLRVP 240

Query: 232 LDSKIIKTA-LLAPVIIVTENDDPVLA-----LAFRKKNINIIYCDCRDLKKLLTILVGR 285
           +     +    L          D  LA     LA    N ++      DL+KLL  L GR
Sbjct: 241 VSKAFFQVGPALVATCAAAAARDRYLADGHELLAVPGSNGHV------DLRKLLLELAGR 294

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           GV  +LVE G  +A +F  + LVD   ++ +  ++G    P
Sbjct: 295 GVNEVLVEAGPRLAGAFARAGLVDEYRIFVAPKLLGSHARP 335


>gi|228940450|ref|ZP_04103019.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228979928|ref|ZP_04140248.1| Riboflavin biosynthesis protein [Bacillus thuringiensis Bt407]
 gi|228779807|gb|EEM28054.1| Riboflavin biosynthesis protein [Bacillus thuringiensis Bt407]
 gi|228819215|gb|EEM65271.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 348

 Score =  203 bits (516), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 118/310 (38%), Positives = 176/310 (56%), Gaps = 8/310 (2%)

Query: 23  GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
           G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARGAT YVTLEPCSHY
Sbjct: 3   GQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGATIYVTLEPCSHY 62

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAY 141
           GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  + E E K     +
Sbjct: 63  GRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEVF 122

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
               + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R ++ AILVG  TV 
Sbjct: 123 NKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRNENAAILVGANTVQ 182

Query: 202 ADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
            D+P LT R+ NG    +P+RIILD   ++ +++ ++        I  T N       A 
Sbjct: 183 KDNPSLTTRIPNG---RNPIRIILDSTLRIPMEANVVTDGEAPTWIFTTSNHAAKKKKAL 239

Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
               + +         +L ++L +L  +GV+SLL+EGG  V  SFI ++L++ +ILY + 
Sbjct: 240 ENAGVKVFVTSGEKHINLHEILDVLGQKGVSSLLIEGGGEVNASFIENKLMNKLILYVAP 299

Query: 318 IVIGEGGIPS 327
            +IG    PS
Sbjct: 300 KIIGGRLAPS 309


>gi|330988221|gb|EGH86324.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 378

 Score =  203 bits (516), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 128/345 (37%), Positives = 181/345 (52%), Gaps = 33/345 (9%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D  +M+ AL  +R  +  T  NP V C+IV+DG ++G G     G PHAEV AL +A
Sbjct: 6   AALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQA 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPCSH GR+PPCA  ++  G+ RVV  + DP+  VSGRGL  L   G
Sbjct: 66  GELARGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPEVSGRGLLRLMNAG 125

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++ESE +     +L R    + +I +K+A+S D    MA   S  ITG  +++ 
Sbjct: 126 IGVQCGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARSA 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSL 232
           V  LRAQS  +L G  TVLAD   LT R + L              P+R+++D   ++ L
Sbjct: 186 VQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLRVPL 245

Query: 233 DSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
           D+   +       ++VT           E    +LALA    ++        DL+KL+  
Sbjct: 246 DAPFFQA---GSALVVTCAAASARGRYQEEGHEMLALADSAGHV--------DLRKLMGE 294

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           L  RGV  +LVE G  +A +F    LVD   ++ +   +G    P
Sbjct: 295 LATRGVNEVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARP 339


>gi|68249531|ref|YP_248643.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
           86-028NP]
 gi|68057730|gb|AAX87983.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
           86-028NP]
          Length = 372

 Score =  203 bits (516), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 124/333 (37%), Positives = 184/333 (55%), Gaps = 16/333 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           SS D  FM  AL  +      T+ NPSV C++VK+G ++G G     G PHAE  AL +A
Sbjct: 5   SSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATAYVTLEPCSHYGR+PPCA  +IE G+ +V+  + DP+ +V+G+GL+ LS  G
Sbjct: 65  GENAKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAG 124

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I     ++  + +     +L R  +    + LK+A+S D    MA   S  ITG  +++ 
Sbjct: 125 IESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDARSD 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231
           V  +RA+S A+L    TVLADDP L  R +   E+            P+R+ILD   ++ 
Sbjct: 185 VQKMRAKSSALLSTSATVLADDPSLNVRWDEFPENLKTEYKKEWLRQPVRVILDSQHRIQ 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
              K+  T   +PV +V+     +    F      II      LK+L+  L  R + +L 
Sbjct: 245 PTHKLFLTH--SPVWLVSSETRDL--TGFPDFCEQIILPKENLLKELMRELGKRQINTLW 300

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           VE GA +A S I+++LVD +I+Y +  ++G+  
Sbjct: 301 VEAGANLAGSLIDAKLVDELIIYIAPKLLGDNA 333


>gi|258592177|emb|CBE68486.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
           reductase [NC10 bacterium 'Dutch sediment']
          Length = 372

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 127/328 (38%), Positives = 182/328 (55%), Gaps = 9/328 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM  AL  +    G TS NP V  ++V+ G ++G G  A  G PHAEV ALE AG  
Sbjct: 6   DERFMRHALVLAEKGRGRTSPNPMVGAVVVQHGRIVGEGYHAQAGKPHAEVVALEYAGGA 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           AR A  YVTLEPC HYGR+PPC   II+ GIRRVVV   DP+  VSGRG+Q L   G+IV
Sbjct: 66  ARNADLYVTLEPCGHYGRTPPCTDRIIQAGIRRVVVPTIDPNPLVSGRGVQSLRDAGVIV 125

Query: 127 DRMMESEGKIFLHAYLTRQVEKRS-HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  + S     L+    + ++ R+  + LK AVS D  I      S  ++G  S+  +H 
Sbjct: 126 DLGLRSADATALNEAFIKFMKHRTPFVVLKAAVSLDGKIATRTGDSRWVSGERSREHIHT 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
           LR Q DA++VGIGTV  D+P LT RL  G ++  P+R+++D       D++I++    + 
Sbjct: 186 LRDQIDAVIVGIGTVRRDNPRLTTRLPEGGRD--PIRVVVDGLGPFPDDAQILQAEAASR 243

Query: 245 VIIVTENDDPVLAL-AFRKKNINII----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
             +    D P   + A  ++ + ++    +     L+ LL  L  R VTS+++EGG  + 
Sbjct: 244 TWVAVAADAPAKRIRALERRGLTVLEAGGFRGRVSLEHLLKRLGEREVTSVMIEGGEGIF 303

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS 327
            S I   +VD  +L+ + I++G    PS
Sbjct: 304 TSAIEEGIVDKFLLFVAPILLGGKTAPS 331


>gi|228954395|ref|ZP_04116421.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228805327|gb|EEM51920.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 373

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 117/324 (36%), Positives = 179/324 (55%), Gaps = 4/324 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AG+ 
Sbjct: 6   DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 66  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 125

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 126 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTALSLDGKTATVTGESKWITGEEARADVHQ 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+    +H P+R++LD H +    S +I   L    
Sbjct: 186 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVVLDTHLRTPPSSHVITDGLAPTW 244

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 245 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 304

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327
            +   + I+ Y S  +IG    P+
Sbjct: 305 KTNNFNEIVTYISPKLIGGKDAPT 328


>gi|229081368|ref|ZP_04213871.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock4-2]
 gi|228701990|gb|EEL54473.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock4-2]
          Length = 373

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 117/324 (36%), Positives = 179/324 (55%), Gaps = 4/324 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AG+ 
Sbjct: 6   DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 66  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 125

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 126 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+    +H P+R++LD H +    S +I   L    
Sbjct: 186 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVVLDTHLRTPPSSHVITDGLAPTW 244

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 245 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 304

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327
            +   + I+ Y S  +IG    P+
Sbjct: 305 KTNNFNEIVTYISPKLIGGKDAPT 328


>gi|294101991|ref|YP_003553849.1| riboflavin biosynthesis protein RibD [Aminobacterium colombiense
           DSM 12261]
 gi|293616971|gb|ADE57125.1| riboflavin biosynthesis protein RibD [Aminobacterium colombiense
           DSM 12261]
          Length = 369

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 120/325 (36%), Positives = 183/325 (56%), Gaps = 14/325 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  +R   G TS NP V C+IVK+  ++  G     G PHAEV+AL+ AG+ 
Sbjct: 9   DEYYMRRAISLARRGTGQTSPNPLVGCVIVKEDTIVAEGYHRSYGMPHAEVEALQRAGDG 68

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YV LEPC+H+G++PPCA  +    + RVV+ + DP+  V+G+G++ L    +I 
Sbjct: 69  AKGATVYVNLEPCAHFGKTPPCAPQLARSKVSRVVIGMVDPNAVVNGKGVEILRSNQLIT 128

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  ++E E K     ++ R  ++R   TLK A + D  I +    S  IT   S+N+ HL
Sbjct: 129 ETGVLEDECKWVNRGFIRRVRDQRPWFTLKSASTIDGQIALPNGESQWITSEESRNKAHL 188

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK---TALL 242
           LRA+ D I+VG+GTVL DDP LT R       SP+RI++D   +   D+ I++     +L
Sbjct: 189 LRAEHDGIMVGVGTVLRDDPSLTVRHT--VGRSPIRIVVDTMLRTPADAAILRGDGAIIL 246

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298
           A +          L+    K    I Y   +    DL+    IL  RG+ S+LVEGGA +
Sbjct: 247 AGISAQKMGKHDQLS----KAGAEIYYLPEKNNRVDLRSAAIILGERGLNSVLVEGGATL 302

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323
           A +FI  +L+D + L+ +  ++G+G
Sbjct: 303 ASAFIQEKLIDGLSLFIAPTIMGQG 327


>gi|28867918|ref|NP_790537.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28851154|gb|AAO54232.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 381

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 127/345 (36%), Positives = 185/345 (53%), Gaps = 33/345 (9%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D  +M+ AL  +R  +  T  NP V C+IV+DG ++G+G  A  G PHAEV AL EA
Sbjct: 9   AALDVHYMAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALREA 68

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPCSH GR+PPCA  +I  G+ RVV  + DP+ +V+G GL  L   G
Sbjct: 69  GELARGATAYVTLEPCSHQGRTPPCADALISAGLARVVAAMQDPNPQVAGSGLLRLMTAG 128

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++E E +     ++ R    R ++ +K+A+S D    MA   S  ITG  +++ 
Sbjct: 129 ISVQCGVLEGEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARSA 188

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----------PMRIILDPHFKLSL 232
           V  LRAQS  +L G  TVLAD   LT R + L  ++          P+R+++D   ++ L
Sbjct: 189 VQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVPL 248

Query: 233 DSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
           D+   +       ++VT           E+   +LALA    ++        DL++L+  
Sbjct: 249 DTPFFQA---GSALVVTCAAASARGRYQEDGHEMLALADSAGHV--------DLRRLMGE 297

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           L  RGV  +LVE G  +A +F    LVD   L+ +   +G    P
Sbjct: 298 LGARGVNEVLVEAGPRLAGAFTRLGLVDEFQLFIAGKFLGSSARP 342


>gi|325498303|gb|EGC96162.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia fergusonii ECD227]
          Length = 367

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 195/371 (52%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++           E+     + V +L   + N ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRSLLIPEHNGHL------DLVLLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+     +F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPHFKFNEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|301054889|ref|YP_003793100.1| riboflavin biosynthesis protein ribD [Bacillus anthracis CI]
 gi|300377058|gb|ADK05962.1| riboflavin biosynthesis protein ribD [Bacillus cereus biovar
           anthracis str. CI]
          Length = 367

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 125/351 (35%), Positives = 189/351 (53%), Gaps = 18/351 (5%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL  ++   G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARG
Sbjct: 7   YMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
            T YVTLEPCSH+GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  
Sbjct: 67  GTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVG 126

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + E E K     +    + KR  IT+K  V+ D  I  +   S  IT   ++ +VH +R 
Sbjct: 127 VCEEESKKMNEVFNKYILTKRPFITIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRN 186

Query: 189 QSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           ++ AILVG  TV  D+P LT R+ NG    +P+R+ILD   ++ +++ ++        I 
Sbjct: 187 ENAAILVGANTVQKDNPSLTTRIPNG---RNPIRVILDSTLRIPMEANVVTDGEAPTWIF 243

Query: 248 VTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
            T N       A     + +         +L ++L +L  +G+ SLL+EGG  V  SFI 
Sbjct: 244 TTNNHAAEKKKALENAGVKVFVTSGEKHINLYEMLDVLGQKGICSLLIEGGGEVNASFIE 303

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----------NFMCVRRDY 345
           + L+D +ILY +  +IG    PS +E   + K          +F  V +DY
Sbjct: 304 NELMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDAIEFKDISFTQVGKDY 354


>gi|229152312|ref|ZP_04280505.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus m1550]
 gi|228631274|gb|EEK87910.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus m1550]
          Length = 379

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 127/369 (34%), Positives = 195/369 (52%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AG+ 
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 72  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+    +H P+R++LD H +    S +I   L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVVLDTHLRTPPSSHVITDGLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 251 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK--NFMCVR---RDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG    P+        K  N + ++       G D+ +    +N
Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQNALSLKIQEMKQIGDDIKIVANARN 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTKCLQEL 379


>gi|332341777|gb|AEE55111.1| riboflavin biosynthesis protein RibD [Escherichia coli UMNK88]
          Length = 367

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 194/371 (52%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++           E+     + V +L   + N ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRSLLIPEHNGHL------DLVLLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCSLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|149914282|ref|ZP_01902813.1| riboflavin synthase subunit alpha [Roseobacter sp. AzwK-3b]
 gi|149811801|gb|EDM71634.1| riboflavin synthase subunit alpha [Roseobacter sp. AzwK-3b]
          Length = 365

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 138/331 (41%), Positives = 193/331 (58%), Gaps = 6/331 (1%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S  DARFM+ AL   R   G    NP+V C++V++G V+GRG T  GG PHAE QAL  
Sbjct: 1   MSRDDARFMALALSLGRRGQGRCWPNPAVGCVVVREGRVVGRGWTGVGGRPHAEPQALAR 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  ARGAT YV+LEPC+H+GR+PPC++ +I  G+ RVV  V D D RVSG+G   L   
Sbjct: 61  AGAAARGATVYVSLEPCAHHGRTPPCSEALIAAGVARVVAPVSDSDPRVSGKGFARLRSA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++  E    L  +L R    R H+TLK+A S D  I  A   S  ITG  +++
Sbjct: 121 GIEVTTGVLAEEAMRDLGGFLRRAGGGRPHLTLKLATSLDGRIATASGHSQWITGPQARH 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH +RA+ DA++VG GT  ADDP LT R  G     P+RI++     L L S++ +TA 
Sbjct: 181 AVHAMRARHDAVMVGAGTARADDPMLTVRGQGDVARQPVRIVVSRRLDLPLMSQLAQTAR 240

Query: 242 LAPVIIVTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
             PV +    D D  LA A+       I CD      D++ +L  L  +G+T +  EGG 
Sbjct: 241 EVPVWLCHGPDPDAALADAWDGIGAERIACDLTGRQLDMEAVLLALGQKGLTRIFCEGGG 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           ++A S + + LVD ++L+ + ++IG  G+PS
Sbjct: 301 SLAASLLGAGLVDELVLFSAGLMIGAEGLPS 331


>gi|331018226|gb|EGH98282.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 378

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 127/345 (36%), Positives = 185/345 (53%), Gaps = 33/345 (9%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D  +M+ AL  +R  +  T  NP V C+IV+DG ++G+G  A  G PHAEV AL EA
Sbjct: 6   AALDVHYMAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALREA 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPCSH GR+PPCA  +I  G+ RVV  + DP+ +V+G GL  L   G
Sbjct: 66  GELARGATAYVTLEPCSHQGRTPPCADALISAGLARVVAAMQDPNPQVAGSGLLRLMTAG 125

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++E E +     ++ R    R ++ +K+A+S D    MA   S  ITG  +++ 
Sbjct: 126 ISVQCGVLEGEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARSA 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----------PMRIILDPHFKLSL 232
           V  LRAQS  +L G  TVLAD   LT R + L  ++          P+R+++D   ++ L
Sbjct: 186 VQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVPL 245

Query: 233 DSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
           D+   +       ++VT           E+   +LALA    ++        DL++L+  
Sbjct: 246 DTPFFQA---GSALVVTCAAASARGRYQEDGHEMLALADSAGHV--------DLRRLMGE 294

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           L  RGV  +LVE G  +A +F    LVD   L+ +   +G    P
Sbjct: 295 LGARGVNEVLVEAGPRLAGAFTRLGLVDEFQLFIAGKFLGSSARP 339


>gi|253576364|ref|ZP_04853694.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251844257|gb|EES72275.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 373

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 129/364 (35%), Positives = 201/364 (55%), Gaps = 17/364 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL  +    G T TNP V  ++VKDG ++G G     G PHAEV AL  AG +
Sbjct: 6   DEYYMALALDMAERAQGQTGTNPVVGAVVVKDGALVGLGTHLKRGTPHAEVHALNMAGSQ 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A G+T YVTLEPCSH+G +PPCA+ +I   ++RVVV  +DP+  V+G+G++ L   GI V
Sbjct: 66  AEGSTVYVTLEPCSHHGLTPPCAERLIHEKVQRVVVACEDPNPLVAGKGIELLRAAGIEV 125

Query: 127 DRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  +  E  + L+    + +     ++T+K A + D  +      S  I+   ++  VH 
Sbjct: 126 EVGVLRERALKLNRRFIKFITTGMPYVTIKSASTLDGKLASRTGDSKWISNEGAREIVHT 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           +R +  AI+VG  T+LADDP+LT RL+  GL   SP+RII D   ++   +++++     
Sbjct: 186 MRHRHQAIMVGASTILADDPQLTTRLSVPGL---SPIRIIADSTLRIPETAQVLRDGQAP 242

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAH 300
             I+ TE  DP  A         ++ C      DL+  L  L  RG++S+LVEGG  +  
Sbjct: 243 TWIVTTEQADPDKAARLIHLGAEVLRCGSGPQVDLRNALVQLGQRGISSVLVEGGGRLNG 302

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGY-LEKNFMCVRRDYFGSDVCLEYIGKN 358
           S +  +LVD I+L+ +  +IG    PS     GY L ++ + +R      D+ +E IG N
Sbjct: 303 SLLEQQLVDEIVLFLAPKLIGGAEAPSSFSFAGYDLMRDAVTLR------DMEVEQIGDN 356

Query: 359 LCLQ 362
           +C++
Sbjct: 357 VCIR 360


>gi|261346387|ref|ZP_05974031.1| riboflavin biosynthesis protein RibD [Providencia rustigianii DSM
           4541]
 gi|282565705|gb|EFB71240.1| riboflavin biosynthesis protein RibD [Providencia rustigianii DSM
           4541]
          Length = 371

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 124/329 (37%), Positives = 184/329 (55%), Gaps = 15/329 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     TS NP+V C+IV+DG V+G G     G PHAEV AL  AG++
Sbjct: 5   DRIYMARAFELARKGRFTTSPNPNVGCVIVRDGEVVGEGYHQKAGEPHAEVHALRMAGDK 64

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSH+GR+PPCA+ +I+ G+ RVV  + DP+ +V+GRGL  LSQ GI  
Sbjct: 65  ARGATAYVTLEPCSHHGRTPPCAEALIKAGVSRVVASMQDPNPQVAGRGLYMLSQAGIET 124

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++  + +     +L R      +I LK+A S D    +    S  IT   ++  V +
Sbjct: 125 SSNILLEQAEALNRGFLKRMRTAFPYIQLKLAASLDGKTALESGESKWITSPAARKDVQV 184

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL-----QEH------SPMRIILDPHFKLSLDS 234
           LRAQ+ AIL    TV+ADDP LT R + L     QE+       P+RI+LD H K++ + 
Sbjct: 185 LRAQASAILSTSNTVIADDPALTVRWSELPSDIQQEYPEDQLRQPIRIVLDRHNKVTPEH 244

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVE 293
           ++  T L     ++    D  +    + + + I+  +   DL  L+  L  R + S+ VE
Sbjct: 245 QV--TQLAGECWLIRPTPDNEVTWQGQVEQVPILADENGIDLVILMMQLAKRNINSIWVE 302

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGE 322
            G  +A S +   LVD +I+Y +  ++G+
Sbjct: 303 AGPTLAGSLLKLGLVDELIVYIAPKLLGD 331


>gi|253578467|ref|ZP_04855739.1| riboflavin biosynthesis protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850785|gb|EES78743.1| riboflavin biosynthesis protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 375

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 116/330 (35%), Positives = 180/330 (54%), Gaps = 9/330 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M  AL  ++  +G T+ NP V  +IVK G VIG+G     G PHAE +AL    E+
Sbjct: 10  DRQYMKMALELAQKGMGFTAPNPMVGAVIVKRGKVIGQGYHRKYGEPHAEREALASCTEQ 69

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GA+ YVTLEPC HYG+ PPC   I+E GIRRV++   DP+  VSG+G++ L + GI +
Sbjct: 70  PEGASIYVTLEPCCHYGKQPPCVNAILESGIRRVIIGSSDPNPLVSGKGIRILKEHGIEV 129

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
            + +++ E      A+      ++ ++ +K A++ D  I      S  +TG  ++  V  
Sbjct: 130 TENVLKEECDKLNEAFFYYIQNQKPYVVMKYAMTMDGKIATYTGASRWVTGEAARMHVQK 189

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            R +   I+ G+GTVLADDP LTCRL NG    +P+RII D H +  L+S+I+KTA   P
Sbjct: 190 QRLKYTGIMAGVGTVLADDPMLTCRLENG---RNPVRIICDSHLRTPLNSRIVKTASTIP 246

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300
            I  T + D      +      ++    +    DL +L+ +L    + S+L+EGG  +  
Sbjct: 247 TIFATSSKDQQKIKNYEDMGCKVLDVPEKNGHIDLNRLMELLGAAKIDSILLEGGGTLNW 306

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           S + S +V  +  Y +  + G     +P+E
Sbjct: 307 SALESGIVQKVQTYIAPKLFGGESAKTPIE 336


>gi|256751435|ref|ZP_05492313.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256749654|gb|EEU62680.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 360

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 120/330 (36%), Positives = 185/330 (56%), Gaps = 15/330 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL  +    G T+ NP V  +IVK+G +IG G   Y G PHAEV AL+ A E+ +G
Sbjct: 4   YMKRALTLAEKGWGHTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVEDVKG 63

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           +T +VTLEPCSHYG++PPC + II+ GI+RV + ++DP+ +VSG G++ L + GI V   
Sbjct: 64  STMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVHVG 123

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +ME + +     ++     K   + +K A+S D  I      S  IT   S+   H +R 
Sbjct: 124 IMEKKARKLNEIFVKYITTKFPFVIVKSAMSIDGKIACYNGNSKWITNEKSRKFAHKIRG 183

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           +  AI+VG+ TV+ D+P LT RL G +  SP+RII+D   ++  DS +I+      +I  
Sbjct: 184 RVSAIMVGVNTVIKDNPMLTTRLEGYK--SPVRIIVDSRGRIPFDSNVIRDKTAKTIIAT 241

Query: 249 TENDDPVLALAFRKK----NINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
           TE    ++    RKK    +I +I     +    LK+L+  L  RG+ S+L+EGG  +  
Sbjct: 242 TE----LMPNNVRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNW 297

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           S     +VD ++ + S  +IG     +P+E
Sbjct: 298 SLFKEGIVDKVMFFISPRIIGGKNALTPVE 327


>gi|229047804|ref|ZP_04193384.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH676]
 gi|228723596|gb|EEL74961.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH676]
          Length = 379

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 117/324 (36%), Positives = 179/324 (55%), Gaps = 4/324 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AG+ 
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 72  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRTLEEARIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+    +H P+R++LD H +    S +I   L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVVLDTHLRTPPSSHVITDGLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 251 IIVGKDVKEEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327
            +   + I+ Y S  +IG    P+
Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPT 334


>gi|332799789|ref|YP_004461288.1| riboflavin biosynthesis protein RibD [Tepidanaerobacter sp. Re1]
 gi|332697524|gb|AEE91981.1| riboflavin biosynthesis protein RibD [Tepidanaerobacter sp. Re1]
          Length = 361

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 123/343 (35%), Positives = 187/343 (54%), Gaps = 11/343 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  AL  +      T  NP V  +IVKDG ++G G     G PHAE++AL+EAG  
Sbjct: 4   DEYFMQRALELAEKGRKTTGENPMVGAVIVKDGKIVGEGYHKKAGGPHAEIEALKEAGLN 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YV LEPC HYG++PPC + +I+  I RVV  ++DP+ +V+G+G   L   GI V
Sbjct: 64  AKGATIYVNLEPCCHYGKTPPCTEALIKAQIARVVAAIEDPNSKVAGKGFSQLQNAGIEV 123

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +++++       ++    E+   +  KIA S D  I ++   S  IT   ++ + H 
Sbjct: 124 SVGVLKNKASKLNEVFIKNISEQTPFVIAKIAQSVDGKIALSSGKSKWITCDAARKKGHE 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +R+  DAILVGIGTVLADDP L CRL      +P++I+LD    + ++SK+++      +
Sbjct: 184 IRSMYDAILVGIGTVLADDPILDCRLAN-NAANPVKIVLDSSAVIPIESKLLQGKGKV-I 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           +  T   D        +   +II       +L +LL  L   G+ S+LVEGGA V  SF+
Sbjct: 242 LATTAQADKGRLQKLEEMGADIIMTSQNKVNLNELLKALYNSGIYSILVEGGAKVFTSFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
              L+D +I++ S  +IG  G      + Y+E  F+   +D +
Sbjct: 302 IEGLLDKLIVFLSPKIIGGDG------KDYVENLFLREMKDVY 338


>gi|255528573|ref|ZP_05395347.1| riboflavin biosynthesis protein RibD [Clostridium carboxidivorans
           P7]
 gi|296188130|ref|ZP_06856522.1| riboflavin biosynthesis protein RibD [Clostridium carboxidivorans
           P7]
 gi|255507738|gb|EET84204.1| riboflavin biosynthesis protein RibD [Clostridium carboxidivorans
           P7]
 gi|296047256|gb|EFG86698.1| riboflavin biosynthesis protein RibD [Clostridium carboxidivorans
           P7]
          Length = 370

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 123/362 (33%), Positives = 199/362 (54%), Gaps = 14/362 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
            + D  +M  AL  +    G  + NP V  +IV +G ++G+G   + G PHAEV AL+EA
Sbjct: 6   KNLDEYYMKMALNLALKGQGNVNPNPLVGAVIVNNGNIVGQGYHKFYGGPHAEVYALKEA 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+G   YV+LEPCSHYG++PPCA+ +++ GI++VV+ + DP+  V+G G++ L + G
Sbjct: 66  GESAKGGELYVSLEPCSHYGKTPPCAEAVLKAGIKKVVIAMKDPNSLVAGNGIKLLEKNG 125

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + ++  ++E E K     ++    EK   + LK A++ D  I      S  ITG  S+  
Sbjct: 126 VEVIVGVLEEEAKKVNEIFIKYITEKTPFVILKTAMTLDGKIATKTGESQWITGEESRKY 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTAL 241
           VH +R +   I+ GIGT+  D+P LT R   +++  SP  II+D    + ++SKI  T  
Sbjct: 186 VHTIRNRVMGIMAGIGTIKKDNPLLTTRF--IEDGKSPTAIIVDSKLSIPVESKIFTTLN 243

Query: 242 LAPVIIV-TENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGA 296
              +II  TE  D        +K I II      +  DLK L+  L   G+ S+L+EGG 
Sbjct: 244 ERKIIIACTEEFDAKKKEELEQKGIKIIITPKDNNRVDLKYLMKELGKEGIDSILLEGGG 303

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE--KNFMCVRR---DYFGSDVC 351
            +  S ++S++VD I+ + +  ++G     +P+E   +E  KN + + +      G D+ 
Sbjct: 304 ELNFSALDSKIVDKILCFIAPKILGGASAKTPVEGSGIEILKNAVLINKMNCKNVGEDLL 363

Query: 352 LE 353
           +E
Sbjct: 364 IE 365


>gi|228909942|ref|ZP_04073763.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis IBL
           200]
 gi|228849777|gb|EEM94610.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis IBL
           200]
          Length = 379

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 117/324 (36%), Positives = 179/324 (55%), Gaps = 4/324 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AG+ 
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 72  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+    +H P+R++LD H +    S +I   L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVVLDTHLRTPPSSHVITDGLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 251 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327
            +   + I+ Y S  +IG    P+
Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPT 334


>gi|206971231|ref|ZP_03232182.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH1134]
 gi|206734003|gb|EDZ51174.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH1134]
          Length = 370

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 117/324 (36%), Positives = 179/324 (55%), Gaps = 4/324 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AG+ 
Sbjct: 3   DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 63  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+    +H P+R++LD H +    S +I   L    
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVVLDTHLRTPPSSHVITDGLAPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 242 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327
            +   + I+ Y S  +IG    P+
Sbjct: 302 KTNNFNEIVTYISPKLIGGKDAPT 325


>gi|295104352|emb|CBL01896.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Faecalibacterium prausnitzii SL3/3]
          Length = 374

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 133/375 (35%), Positives = 201/375 (53%), Gaps = 28/375 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++VK+G +IG+G     G  HAE  AL    E+
Sbjct: 3   DKEYMRLALQLAKKGCGWTSPNPMVGAVVVKEGRIIGQGWHQRYGQAHAERNALASCTED 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            +GAT YVTLEPC HYG+ PPC   I++ GI RVVV   DP+  V+G+G+  L   GI +
Sbjct: 63  PQGATLYVTLEPCCHYGKQPPCVDAILDAGIHRVVVGSADPNPLVAGKGIAILRAHGIDV 122

Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
            + +++ E     K+F H Y+T    KR  +++K A++ D  I      S  ITG I +N
Sbjct: 123 TENVLQEECDALNKVFFH-YIT---TKRPFVSMKYAMTMDGKIATYTGASKWITGEIVRN 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V   R +   I+VG+GT+LADDP LTCR+ G ++  P+RII D H +  L S+++ TA 
Sbjct: 179 HVQRQRHRFRGIMVGVGTILADDPLLTCRIEGGRD--PVRIICDTHLRTPLQSQVVMTAK 236

Query: 242 LAPVIIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
             P I+ T   DP    A+++    ++    +C   +L +L+  L    + S+L+EGG  
Sbjct: 237 QVPTILATCCGDPEKQAAYQQAGCRVLCLEAHCGHVNLLQLMEQLGQEQIDSILLEGGGT 296

Query: 298 VAHSFINSRLVDSIILYRSQIVIG--------EG-GIPSPLEEGYLEKNFMCVRRDYFGS 348
           +  S + S +V  +  Y +  + G        EG G+P P +  +  KN    R +  G 
Sbjct: 297 LNWSALESGIVQQVQAYIAPKLFGGRDAKAPIEGAGVPLP-DAAFRLKN---SRLEQLGK 352

Query: 349 DVCLEYIGKNLCLQE 363
           D  +E   +  CL E
Sbjct: 353 DFLIESEVEYPCLPE 367


>gi|30022196|ref|NP_833827.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
           cereus ATCC 14579]
 gi|228960377|ref|ZP_04122030.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229111585|ref|ZP_04241136.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock1-15]
 gi|229129391|ref|ZP_04258362.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-Cer4]
 gi|29897753|gb|AAP11028.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
           cereus ATCC 14579]
 gi|228653996|gb|EEL09863.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-Cer4]
 gi|228671967|gb|EEL27260.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock1-15]
 gi|228799401|gb|EEM46365.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 379

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 127/369 (34%), Positives = 195/369 (52%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AG+ 
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 72  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+    +H P+R++LD H +    S +I   L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVVLDTHLRTPPSSHVITDGLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 251 IIVGKDVKEEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK--NFMCVR---RDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG    P+        K  N + ++       G D+ +    +N
Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQNALSLKIQEMKQIGDDIKIVANARN 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTKCLQEL 379


>gi|218549926|ref|YP_002383717.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia fergusonii ATCC 35469]
 gi|218357467|emb|CAQ90106.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia fergusonii ATCC 35469]
          Length = 367

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 195/371 (52%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIATGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++           E+     + V +L   + N ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRSLLIPEHNGHL------DLVLLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+     +F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPHFKFNEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|294678596|ref|YP_003579211.1| riboflavin biosynthesis protein RibD [Rhodobacter capsulatus SB
           1003]
 gi|294477416|gb|ADE86804.1| riboflavin biosynthesis protein RibD [Rhodobacter capsulatus SB
           1003]
          Length = 367

 Score =  202 bits (515), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 128/329 (38%), Positives = 184/329 (55%), Gaps = 12/329 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S  D RFM  AL  +   +G    NP+V C+IV  G ++GRG T  GG PHAE +AL++
Sbjct: 1   MSEADGRFMRLALGLAGRGLGNVWPNPAVGCVIVNGGRIVGRGWTQPGGRPHAERRALDQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  ARGATAYVTLEPC+H+G++PPCA+ +I  G+ RVV  ++DPD RVSGRG   L   
Sbjct: 61  AGPAARGATAYVTLEPCAHHGKTPPCAEALIAAGVVRVVSALEDPDPRVSGRGHAMLRAA 120

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V+  ++ +E +     +L+R    R  + LK+  S D  I +A   S  ITG  ++ 
Sbjct: 121 GIAVETGVLAAEARAAQAGFLSRIERGRPWLALKLGASFDGRIALANGESQWITGPQARA 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           QV  LRA+ DA+LVG GT  ADDP LT R +     +P+R++      L    ++  +  
Sbjct: 181 QVQALRARFDAVLVGGGTARADDPLLTLR-HFKPLRAPVRVVASRRLDLP-RGRLAGSLG 238

Query: 242 LAPVIIVTENDDPVLALAFRKK-NINIIYCDCRDLKK--------LLTILVGRGVTSLLV 292
            AP+ ++   + P  A AF       +I    RD  +        LL  L  RG+T +  
Sbjct: 239 QAPLWLLHGAEAPGEARAFWAGLGAELIEVAGRDTGRDTGLDPVALLAALGARGLTRVFC 298

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           EGG   A S + + LVD +I + + +V+G
Sbjct: 299 EGGGQFAASLMAAGLVDELIGFTAGVVLG 327


>gi|194364355|ref|YP_002026965.1| riboflavin biosynthesis protein RibD [Stenotrophomonas maltophilia
           R551-3]
 gi|194347159|gb|ACF50282.1| riboflavin biosynthesis protein RibD [Stenotrophomonas maltophilia
           R551-3]
          Length = 361

 Score =  202 bits (515), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 123/327 (37%), Positives = 176/327 (53%), Gaps = 5/327 (1%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P S  D   M+ ALR +      T  NP V C+I     V+G+G     G PHAEV AL 
Sbjct: 4   PFSVLDHLHMANALRLAERAAYTTRPNPMVGCVIAHGERVVGQGWHQRAGGPHAEVFALR 63

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           EAG EARGATAYVTLEPC+HYGR+PPCA  +IE G+ RVV  + DP  +V G G   L  
Sbjct: 64  EAGSEARGATAYVTLEPCAHYGRTPPCALALIEAGVSRVVAAMRDPFPKVDGGGFDLLRN 123

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI + + +M ++ +     +L+R    R  + +K+A S D    MA   S  ITG  ++
Sbjct: 124 AGIEVAEGLMAAQARELNKGFLSRVERNRPWLRVKLAASLDGRTAMADGSSKWITGPAAR 183

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             V   RA++ AIL G  TVLADDP LT RL   +   P+R++LD   + SL+   ++  
Sbjct: 184 EDVQHWRARAGAILTGADTVLADDPMLTVRLADTEVMPPLRVVLDSRLR-SLECSRVREG 242

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVA 299
             AP + +          A   +  ++   D R DL  +L +L  RG+  +  E GA +A
Sbjct: 243 -GAPTLYL-HAAAVSAPDAADAEFASVPSADGRLDLGAVLALLAERGINEVHTEAGATLA 300

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP 326
            + +    VD ++LY++  ++G+ G P
Sbjct: 301 GALLRGGWVDELLLYQAPTLLGDNGRP 327


>gi|330964923|gb|EGH65183.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 378

 Score =  202 bits (515), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 127/345 (36%), Positives = 185/345 (53%), Gaps = 33/345 (9%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D  +M+ AL  +R  +  T  NP V C+IV+DG ++G+G  A  G PHAEV AL EA
Sbjct: 6   AALDVHYMAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALREA 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPCSH GR+PPCA  +I  G+ RVV  + DP+ +V+G GL  L   G
Sbjct: 66  GELARGATAYVTLEPCSHQGRTPPCADALISAGLGRVVAAMQDPNPQVAGSGLLRLMTAG 125

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++E E +     ++ R    R ++ +K+A+S D    MA   S  ITG  +++ 
Sbjct: 126 ISVQCGVLEGEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARSA 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----------PMRIILDPHFKLSL 232
           V  LRAQS  +L G  TVLAD   LT R + L  ++          P+R+++D   ++ L
Sbjct: 186 VQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVPL 245

Query: 233 DSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
           D+   +       ++VT           E+   +LALA    ++        DL++L+  
Sbjct: 246 DTPFFQA---GSALVVTCAAASARGRYQEDGHEMLALADSAGHV--------DLRRLMGE 294

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           L  RGV  +LVE G  +A +F    LVD   L+ +   +G    P
Sbjct: 295 LGARGVNEVLVEAGPRLAGAFTRLGLVDEFQLFIAGKFLGSSARP 339


>gi|153940820|ref|YP_001392147.1| riboflavin biosynthesis protein RibD [Clostridium botulinum F str.
           Langeland]
 gi|152936716|gb|ABS42214.1| riboflavin biosynthesis protein RibD [Clostridium botulinum F str.
           Langeland]
 gi|295320152|gb|ADG00530.1| riboflavin biosynthesis protein RibD [Clostridium botulinum F str.
           230613]
          Length = 365

 Score =  202 bits (515), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 114/320 (35%), Positives = 181/320 (56%), Gaps = 10/320 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL+ +    G  + NP V  ++VK+  +IG G   Y G PHAEV AL EAGE+A+G
Sbjct: 7   YMEKALKLAERGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGPHAEVYALREAGEKAKG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           AT YVTLEPCSHYG++PPCA+ I++ GI + ++ + DP+  V GRG+  L Q GI +V  
Sbjct: 67  ATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVTG 126

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +ME E K     ++    +K+  + LK A + D  I      S  ITG  ++ +V  +R 
Sbjct: 127 IMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATRTGESKWITGEEARYKVQQIRN 186

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII- 247
               I+VGI TV+ D+P LT R+ G +  SP  II+D + ++ L+SKI++T     + I 
Sbjct: 187 DLSGIMVGIDTVIKDNPLLTTRIEGGR--SPKAIIVDSNLRIPLESKILETFNKRAIYIA 244

Query: 248 -VTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAHS 301
              ++ +P    A       ++  +  +     L +L+  LV  GV S+L+EGG+ +  S
Sbjct: 245 ATKKHKNPSKKNALENLGAKVLEFEENEEGKVPLNELMQYLVSEGVDSILLEGGSTLNFS 304

Query: 302 FINSRLVDSIILYRSQIVIG 321
            +   +VD ++ + +  ++G
Sbjct: 305 ALKEGIVDKVMCFIAPKIMG 324


>gi|219668833|ref|YP_002459268.1| riboflavin biosynthesis protein RibD [Desulfitobacterium hafniense
           DCB-2]
 gi|219539093|gb|ACL20832.1| riboflavin biosynthesis protein RibD [Desulfitobacterium hafniense
           DCB-2]
          Length = 365

 Score =  202 bits (515), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 131/331 (39%), Positives = 188/331 (56%), Gaps = 11/331 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +MS AL  +   +G TS NP V C+IVKDG ++G G     G PHAEV AL+ AGE
Sbjct: 3   LDNHYMSRALELAALAMGRTSPNPLVGCVIVKDGAIVGEGYHQKAGTPHAEVHALQAAGE 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            ARGATAYVTLEPCSH+G++PPCA  +I+ GI+RVVV + DP+  V G+G+  L   GI 
Sbjct: 63  HARGATAYVTLEPCSHFGKTPPCADALIKAGIQRVVVAMVDPNPLVGGQGITRLRAAGIQ 122

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           VD  + E E +     +L         +  K A++ D  I      S  +T   S+  VH
Sbjct: 123 VDVGLKEKEARTLNKGFLKAMQTGLPFVLYKSALTLDGKIATESGDSKWVTNEASRAYVH 182

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR   D I+VG  TV  D+P L CR++  +   P+R+I+D   ++ L + ++ ++  AP
Sbjct: 183 RLRDHFDVIMVGSETVRQDNPALNCRID--EGRDPVRLIVDGTLQIPLQAAVLASSCTAP 240

Query: 245 VIIVTENDDPVLAL-AFRK-KNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVA 299
            +I T    P+  L A R  +N+ +   D      LK LL  LV RG  S+L+EGG  +A
Sbjct: 241 CLIATTASAPLDKLKALRALENVEVWQYDSPRYVPLKDLLGDLVKRGWNSVLLEGGGGLA 300

Query: 300 HSFINSRLVDSI-ILYRSQIVIGEGGIPSPL 329
            S +  +L+D +  +Y  +++ G+G  PSPL
Sbjct: 301 GSLLREQLIDEVEFIYAPKLIGGKG--PSPL 329


>gi|164687268|ref|ZP_02211296.1| hypothetical protein CLOBAR_00909 [Clostridium bartlettii DSM
           16795]
 gi|164603692|gb|EDQ97157.1| hypothetical protein CLOBAR_00909 [Clostridium bartlettii DSM
           16795]
          Length = 370

 Score =  202 bits (515), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 116/338 (34%), Positives = 184/338 (54%), Gaps = 20/338 (5%)

Query: 5   SFDARF------MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
            FD+R+      M  AL  ++  +G  + NP V C+IVKDG VIG G     G PHAEV 
Sbjct: 2   KFDSRYQEDNYYMKKALELAKLGIGAVNPNPLVGCIIVKDGKVIGEGYHMKFGEPHAEVN 61

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           A+  A E+  GAT YVTLEPCSH+G++PPCA  ++   ++RVV+C +DP+  V+G G++ 
Sbjct: 62  AINSAKEDIEGATVYVTLEPCSHFGKTPPCADNLVRHKVKRVVICNNDPNPLVAGNGIKK 121

Query: 119 LSQKGI-IVDRMMESEG----KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP 173
           L   GI +   ++E EG    ++F H Y+      +  +  K A+S D  I      S  
Sbjct: 122 LQNAGIEVTTGILEEEGLKLNEVFFH-YIKNN---KPLVISKTAISMDGKIATKHMESQW 177

Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233
           I+    +   H  R +  AI+VGI TVL D+P LT R+   +  +P+RI++D + K+ ++
Sbjct: 178 ISNESCREMTHEYRNKYMAIMVGINTVLKDNPSLTSRIKNKKTRNPIRIVIDTNLKIPMN 237

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTS 289
           S ++       +I    ND   + L  ++K++++  C  +    DL  ++  L    + S
Sbjct: 238 SNLVNDNKSKTIIFTCNNDLKKINL-LKEKDVDVHICPKKEEGVDLNFVIEKLGELKIDS 296

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           +LVEGGA +  S   + LVD + ++ +  +IG    PS
Sbjct: 297 VLVEGGATLNDSLFRNNLVDKVKIFMAPKIIGGKDAPS 334


>gi|213018626|ref|ZP_03334434.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|212995577|gb|EEB56217.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 399

 Score =  202 bits (515), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 132/362 (36%), Positives = 188/362 (51%), Gaps = 48/362 (13%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           MS AL+ +   +G  + NP+V C+IVK+G+VIG G T  GG PHAEV AL+ A +    A
Sbjct: 1   MSIALKLAEKSLGSVAPNPAVGCIIVKNGMVIGEGYTGIGGRPHAEVVALQNAKDLTHSA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
           T YVTLEPC H+G + PC   II+ GI+RVV+   DPD RVSG G++ L + GI V++ +
Sbjct: 61  TMYVTLEPCCHFGVTEPCTAEIIKSGIKRVVIAAIDPDSRVSGGGIKALKEAGIEVEQGI 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M+ E ++    + T +   R  I  KIA + D  I      S  IT   ++N VH LRA+
Sbjct: 121 MQKEAEVLNVGFFTTKEFHRPFIACKIATTLDGKIATFTGDSKWITSEDTRNWVHELRAK 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DAI++G  T++ DDP LTCRL GL++ SP+R+I+D   KL  +  I KTA       ++
Sbjct: 181 YDAIMIGSSTLINDDPLLTCRLPGLEDRSPIRLIIDSQGKLKEEHNIAKTADTLYNHDLS 240

Query: 250 ENDDPVLALAF-------RKK-------------------------------------NI 265
           +     L+++F       RKK                                     N 
Sbjct: 241 KEPTAYLSMSFQRVTLESRKKEEEWIPVSRTGMTGGSTWVITNNKVKKKIKNINYLVVNS 300

Query: 266 NIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           N     C  LK + + LV   G+T LLVEGG  +    +   L+D +I+ RS  ++G   
Sbjct: 301 NNAGKVC--LKDMASKLVSEIGITRLLVEGGGILITELLKHNLIDRLIICRSGKILGNDA 358

Query: 325 IP 326
            P
Sbjct: 359 TP 360


>gi|227824644|ref|ZP_03989476.1| riboflavin biosynthesis protein ribD [Acidaminococcus sp. D21]
 gi|226905143|gb|EEH91061.1| riboflavin biosynthesis protein ribD [Acidaminococcus sp. D21]
          Length = 366

 Score =  202 bits (515), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 125/327 (38%), Positives = 181/327 (55%), Gaps = 19/327 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D  +M  AL  +    G TS NP V C+IV  DG V+G+G     G PHAE+ A+++AGE
Sbjct: 3   DEEYMQMALDLAEKARGATSPNPLVGCVIVSPDGHVVGKGYHHKAGEPHAEINAMDDAGE 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ---- 121
           +  GATAYVTLEPCSHYGR+ PC + +I+ GI++VV    DP+ RVSGRG + L +    
Sbjct: 63  KTAGATAYVTLEPCSHYGRTGPCCEALIKAGIKKVVAAATDPNPRVSGRGFRRLEEAGVE 122

Query: 122 --KGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
              G++ D+    + +IF+H   T     R  + LK A++ D  I      S  ITG  +
Sbjct: 123 VVSGVLADKAYR-QNEIFMHYMKT----GRPFVALKYAMTLDGKIATVSGDSKWITGVKA 177

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H LR+  DAILVG  TV  DDP LT RL  ++  +P+RIILD    L L+ K+   
Sbjct: 178 RTYAHRLRSWYDAILVGRETVAQDDPSLTVRL--VEGKNPLRIILDSKASLPLERKVFTD 235

Query: 240 ALLAPVIIVTENDDPVLALAFRK-KNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294
                +++VT         AF     ++++    R    DL  LL  L  + VTS+LVEG
Sbjct: 236 GAADTLLVVTPQALQEKVRAFADLPGVSVLTAAERDGHVDLSDLLQQLAKKDVTSVLVEG 295

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321
           G+ +  +F ++ LV+ +  + +  +IG
Sbjct: 296 GSDIHGAFFDAGLVERVYAFIAPSLIG 322


>gi|330953126|gb|EGH53386.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae Cit 7]
          Length = 378

 Score =  202 bits (515), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 128/345 (37%), Positives = 181/345 (52%), Gaps = 33/345 (9%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D  +M+ AL  +R  +  T  NP V C+IV++G ++G G     G PHAEV AL +A
Sbjct: 6   AALDVHYMARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHVRAGEPHAEVHALRQA 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPCSH GR+PPCA  +IE G+ RVV  + DP+  VSGRGL  L   G
Sbjct: 66  GELARGATAYVTLEPCSHQGRTPPCADALIEAGVTRVVAAMQDPNPEVSGRGLLRLMNAG 125

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++ESE +     +L R      ++ +K+A+S D    MA   S  ITG  +++ 
Sbjct: 126 IGVQCGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSA 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSL 232
           V  LRAQS  +L G  TVLAD   LT R + L              P+R+++D   ++ L
Sbjct: 186 VQRLRAQSSVVLSGADTVLADKARLTVRPDELGLDAELTSLAAARPPLRVLIDGRLRVPL 245

Query: 233 DSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
           D+   +       ++VT           E    +LALA    ++        DL++L+  
Sbjct: 246 DAPFFQA---GSALVVTCAAASARGRYQEEGHEMLALADSAGHV--------DLRRLMGE 294

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           L  RGV  +LVE G  +A +F    LVD   L+ +   +G    P
Sbjct: 295 LAARGVNEVLVEAGPRLAGAFARLGLVDEFQLFIAGKFLGSSARP 339


>gi|119774153|ref|YP_926893.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase.,
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Shewanella amazonensis SB2B]
 gi|119766653|gb|ABL99223.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Shewanella amazonensis SB2B]
          Length = 378

 Score =  202 bits (515), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 124/344 (36%), Positives = 194/344 (56%), Gaps = 33/344 (9%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE 62
           S+ D   M+ A+  ++     T  NP+V C+IV D G ++G G     G PHAEV AL+ 
Sbjct: 8   SALDRAMMARAIMLAKRGQYTTRPNPNVGCVIVNDAGDIVGEGWHIRAGGPHAEVHALKA 67

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A ++ARGATAYVTLEPCSHYGR+PPCA+ +I+ G++RVVV + DP+ +V+GRG++ L   
Sbjct: 68  AADKARGATAYVTLEPCSHYGRTPPCAKALIDNGLKRVVVAMTDPNPQVAGRGIKLLQDA 127

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   +ME+E +     +L+R   KR  +T+K+  S D    ++   S  ITG  ++ 
Sbjct: 128 GIEVAHGLMEAEARALNPGFLSRMERKRPFVTVKVGASLDGKTALSSGESKWITGPEARR 187

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR----------LNGLQEHSPMRIILDPHFKLS 231
            V  LRA+S A++ GI TVL DDP L  R          L   +   P+R++LD   ++S
Sbjct: 188 DVQRLRAKSCALITGIDTVLLDDPSLNVRHGELGSLGASLTEPELIQPIRVVLDSQRRMS 247

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII--YCDCR---------DLKKLLT 280
            D+K+    +  P+++V+       A  + +K ++ +  +  C          DL  LL+
Sbjct: 248 TDAKLF--GITGPILLVS-------AEPYDEKFLHSLPDFVTCLILPGSHGRIDLAALLS 298

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            L G     +LVE G  +A +FI + L D ++LY++  ++G  G
Sbjct: 299 HL-GENCNRVLVEAGGTLAGAFIAAGLCDELVLYQAPKLLGSHG 341


>gi|261211387|ref|ZP_05925675.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio sp. RC341]
 gi|260839342|gb|EEX65968.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio sp. RC341]
          Length = 367

 Score =  202 bits (515), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 123/339 (36%), Positives = 184/339 (54%), Gaps = 27/339 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +AGE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+GRG+Q L
Sbjct: 61  MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIQAGVAKVICAMQDPNPQVAGRGVQML 120

Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI V+  ++E++ +     +L R      ++ LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSSA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R + L               P+R+ILD  
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPPSVQAQYAEADLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGR- 285
            +L             P + + +   PVL +A    ++ I   + + DL++LLT L  + 
Sbjct: 241 HQLY------------PELALYQTPSPVLRVASENADLRISAENGKLDLRELLTQLAQQH 288

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            V  + VE G+ +A S I  +LVD IILY +  ++G  G
Sbjct: 289 NVNQVWVEAGSQLAQSLIEQQLVDEIILYLAPKLMGSDG 327


>gi|268592074|ref|ZP_06126295.1| riboflavin biosynthesis protein RibD [Providencia rettgeri DSM
           1131]
 gi|291312469|gb|EFE52922.1| riboflavin biosynthesis protein RibD [Providencia rettgeri DSM
           1131]
          Length = 371

 Score =  202 bits (514), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 124/328 (37%), Positives = 180/328 (54%), Gaps = 15/328 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     TS NP+V C+IV+DG ++G G     G PHAEV AL  AG++
Sbjct: 5   DNMYMARAFELARKGRFTTSPNPNVGCVIVRDGTIVGEGYHQKAGEPHAEVHALRMAGDK 64

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPCA+ +I+ G+ RVV  + DP+ +V+GRGL  LSQ GI  
Sbjct: 65  AQGATAYVTLEPCSHHGRTPPCAEALIKAGVSRVVAAMQDPNPQVAGRGLYMLSQAGIET 124

Query: 127 -DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++ ++ +     +L R      +I LK+A S D    +    S  IT   ++  V  
Sbjct: 125 RSNVLLNDAEAANRGFLKRMRTGFPYIQLKLAASLDGKTALESGESKWITSSAARKDVQA 184

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLSLDS 234
           LRA++ AIL    TV+ADDP LT R N L           Q   P+RI+LD H +++   
Sbjct: 185 LRAEASAILSTSSTVVADDPSLTVRWNELPSDIQQVYPENQVRQPIRIVLDNHNRVTSGH 244

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC-RDLKKLLTILVGRGVTSLLVE 293
           K+  T L     +V  N D       + + + +   +   DL  L+  L  R V S+ VE
Sbjct: 245 KV--TQLDGECWLVRSNPDENAVWQGQVEQLAVPADENGTDLVILMMQLAKRNVNSIWVE 302

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG 321
            GA +A S +   LVD +I+Y +  ++G
Sbjct: 303 AGAKLAGSLLKLGLVDELIVYIAPKLLG 330


>gi|229071616|ref|ZP_04204834.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus F65185]
 gi|228711552|gb|EEL63509.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus F65185]
          Length = 379

 Score =  202 bits (514), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 119/324 (36%), Positives = 179/324 (55%), Gaps = 4/324 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AG+ 
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I V
Sbjct: 72  AKDATVYVTLEPCSHFGKTPPCCELLIERGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131

Query: 127 DRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +     + L+ Y    ++ KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEADAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+    +H P+R+ILD H +    S +I   L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVILDTHLRTPPSSHVITDGLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 251 IIVGKDVKKEKISSYESKNIAIFQMETKYIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327
            +   + I+ Y S  +IG    P+
Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPT 334


>gi|50120065|ref|YP_049232.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Pectobacterium atrosepticum SCRI1043]
 gi|49610591|emb|CAG74036.1| riboflavin biosynthesis protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 369

 Score =  202 bits (514), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 127/334 (38%), Positives = 183/334 (54%), Gaps = 22/334 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL  +R     T+ NP+V C+IV+DG ++G G     G PHAEV AL  AGE 
Sbjct: 4   DELYMARALELARRGRFTTAPNPNVGCVIVRDGEIVGEGYHFRAGEPHAEVHALRMAGER 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPCA  +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 64  ARGATAYVTLEPCSHHGRTPPCADALITAGVSRVVAAMQDPNPQVAGRGLHRLQQAGITV 123

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 124 SHGLMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL----QEH-------SPMRIILDPHFKLSLDS 234
            RA+S AIL    TVLADDP LT R + L    Q+H        P+R+I+D   +++   
Sbjct: 184 FRAESAAILSSSTTVLADDPSLTVRWSELDADVQKHYSEADLRQPVRVIVDSQQRVTPQH 243

Query: 235 KIIKTALLAPVIIVTENDDP----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +II       +  V  ++      V  L   + N  +      DL  L+ +L  R + S+
Sbjct: 244 RIISQPGETWLARVQADEQAWPQNVEHLMLPQHNGGV------DLVALMMVLGRRQINSV 297

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            VE GA++A + +N+ +VD +I+Y +  ++GE  
Sbjct: 298 WVEAGASLAGALLNACVVDELIVYLAPKLLGENA 331


>gi|229843994|ref|ZP_04464135.1| hypothetical protein CGSHi6P18H1_06131 [Haemophilus influenzae
           6P18H1]
 gi|229812988|gb|EEP48676.1| hypothetical protein CGSHi6P18H1_06131 [Haemophilus influenzae
           6P18H1]
          Length = 372

 Score =  202 bits (514), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 122/333 (36%), Positives = 185/333 (55%), Gaps = 16/333 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           SS D  FM  AL  +      T+ NPSV C++VK+G ++G G     G PHAE  AL +A
Sbjct: 5   SSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GA AYVTLEPCSHYGR+PPCA  +IE G+ +V+  + DP+ +V+G+GL+ LS  G
Sbjct: 65  GENAKGAIAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAG 124

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I     ++  + +     +L R  +    + LK+A+S D    MA   S  ITG  +++ 
Sbjct: 125 IESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGSDARSD 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231
           V  +RA+S A+L    T++ADDP L  R +   E+            P+R+ILD   ++ 
Sbjct: 185 VQKMRAKSSALLSTSATIIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHRIQ 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
              K+  T   +PV +V+  ++P     F      II      LK+L+  L  R + +L 
Sbjct: 245 PTHKLFLTH--SPVWLVS--NEPRDLTGFPDFCEQIILPKENLLKELMQELGRRQINTLW 300

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           VE GA +A S I+++LVD +I+Y +  ++G+  
Sbjct: 301 VEAGANLAGSLIDAKLVDELIIYIAPKLLGDNA 333


>gi|228902621|ref|ZP_04066772.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis IBL
           4222]
 gi|228967148|ref|ZP_04128184.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228792517|gb|EEM40083.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228857062|gb|EEN01571.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis IBL
           4222]
          Length = 379

 Score =  202 bits (514), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 117/324 (36%), Positives = 179/324 (55%), Gaps = 4/324 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ A + 
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMASQN 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 72  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D  I      S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKIATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+    +H P+R++LD H +    S +I   L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVVLDTHLRTPPSSHVITDGLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 251 IIVGKDVKKEKISSYNSKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327
            +   + I+ Y S  +IG    P+
Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPT 334


>gi|218230924|ref|YP_002368914.1| riboflavin biosynthesis protein RibD [Bacillus cereus B4264]
 gi|218158881|gb|ACK58873.1| riboflavin biosynthesis protein RibD [Bacillus cereus B4264]
          Length = 370

 Score =  202 bits (514), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 116/324 (35%), Positives = 179/324 (55%), Gaps = 4/324 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AG+ 
Sbjct: 3   DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 63  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEETRIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+    +H P+R++LD H +    S +I   L    
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVVLDTHLRTPPSSHVITDGLAPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 242 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327
            +   + ++ Y S  +IG    P+
Sbjct: 302 KTNNFNEVVTYISPKLIGGKDAPT 325


>gi|324114633|gb|EGC08601.1| riboflavin biosynthesis protein RibD [Escherichia fergusonii B253]
          Length = 367

 Score =  202 bits (514), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 195/371 (52%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVYALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++           E+     + V +L   + N ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRSLLIPEHNGHL------DLVLLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+     +F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPHFKFNEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|167036452|ref|YP_001664030.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320114877|ref|YP_004185036.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166855286|gb|ABY93694.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319927968|gb|ADV78653.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 360

 Score =  202 bits (514), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 120/330 (36%), Positives = 186/330 (56%), Gaps = 15/330 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL  +    G T+ NP V  +IVK+G +IG G   Y G PHAEV AL+ A E+ +G
Sbjct: 4   YMKRALTLAEKGWGHTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVEDVKG 63

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           +T +VTLEPCSHYG++PPC + II+ GI+RV + ++DP+ +VSG G++ L + GI V   
Sbjct: 64  STMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVHVG 123

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +ME + +     ++     K   + +K A+S D  I      S  IT   S+   H +R 
Sbjct: 124 IMEKKARKLNEIFVKYITTKFPFVIVKSAMSIDGKIACYNGNSKWITNEKSRKFAHKIRG 183

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           +  AI+VG+ TV+ D+P LT RL G +  SP+RII+D   ++  DS +I+      +I  
Sbjct: 184 RVSAIMVGVNTVIKDNPMLTTRLEGYK--SPVRIIVDSRGRIPFDSNVIRDKTAKTIIAT 241

Query: 249 TENDDPVLALAFRKK----NINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
           TE    ++    RKK    +I +I     +    LK+L+  L  RG+ S+L+EGG  +  
Sbjct: 242 TE----LMPNNVRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNW 297

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           S +   +VD ++ + S  +IG     +P+E
Sbjct: 298 SALKEGIVDKVMFFISPRIIGGKNALTPVE 327


>gi|289647764|ref|ZP_06479107.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 378

 Score =  202 bits (514), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 128/345 (37%), Positives = 183/345 (53%), Gaps = 33/345 (9%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D  +M+ AL  +R  +  T  NP V C+IV+DG ++G G     G PHAEV AL +A
Sbjct: 6   AALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQA 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPCSH GR+PPCA  ++  G+ RVV  + DP+  VSGRGL  L   G
Sbjct: 66  GELARGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPDVSGRGLLRLMNAG 125

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++ESE +     +L R    + +I +K+A+S D    MA   S  ITG  +++ 
Sbjct: 126 IGVQCGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARSA 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----------PMRIILDPHFKLSL 232
           V  LRAQS  +L G  TVLAD   LT R + L  ++          P+R+++D   ++ L
Sbjct: 186 VQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAAPPPLRVLIDGRLRVPL 245

Query: 233 DSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
           D+   +       ++VT           E    +LALA    ++        DL+KL+  
Sbjct: 246 DAPFFQA---GSALVVTCAAASARGRYQEEGHEMLALADSAGHV--------DLRKLMGE 294

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           L  RGV  +LVE G  +A +F    LVD   ++ +   +G    P
Sbjct: 295 LATRGVNEVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARP 339


>gi|19704838|ref|NP_602333.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|296327621|ref|ZP_06870165.1| riboflavin biosynthesis protein RibD [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|19712714|gb|AAL93632.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|296155267|gb|EFG96040.1| riboflavin biosynthesis protein RibD [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 369

 Score =  202 bits (514), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 117/325 (36%), Positives = 184/325 (56%), Gaps = 10/325 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M+ A+  ++   G  + NP V  +IVKDG +IG G     G PHAEV AL EAGE 
Sbjct: 6   DEKYMARAIELAKRGTGGVNPNPLVGAVIVKDGKIIGEGWHKKFGGPHAEVWALNEAGEN 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YVTLEPCSH G++PPCA+ IIE GI+R VV   DP+  V+G+G++ +   GI V
Sbjct: 66  AKGATVYVTLEPCSHQGKTPPCAKRIIEAGIKRCVVACIDPNPLVAGKGMKIIENAGIEV 125

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  ++E E K     +      K  ++ LK  ++ D  I      S  IT  I++ +V  
Sbjct: 126 ELGVLEKEAKEINKIFFKYIENKIPYLFLKCGITLDGKIATRNGKSKWITNEIAREKVQF 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           LR +  AI+VGI TVL D+P L  RL+    G+++ +P R+++DP+ +  ++ K +    
Sbjct: 186 LRTKFMAIMVGINTVLKDNPSLDSRLDEKKFGIEKRNPFRVVIDPNLESPIEGKFLNFN- 244

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAA 297
               IIVT ND+  L    + KN+  I+         ++ +L  L   G+ S+L+EGG+ 
Sbjct: 245 DGKAIIVTSNDNKGLEKLEKYKNLGTIFIFLEGKIFKIQDILKELGKLGIDSVLLEGGSG 304

Query: 298 VAHSFINSRLVDSIILYRSQIVIGE 322
           +  +     +VD+  ++ +  +IG+
Sbjct: 305 LISTAFKENIVDAGEIFIAPKIIGD 329


>gi|301169668|emb|CBW29269.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Haemophilus influenzae 10810]
          Length = 372

 Score =  202 bits (514), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 123/333 (36%), Positives = 185/333 (55%), Gaps = 16/333 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           SS D  FM  AL  +      T+ NPSV C++VK+G ++G G     G PHAE  AL +A
Sbjct: 5   SSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATAYVTLEPC+HYGR+PPCA  +IE G+ +V+  + DP+ +V+G+GL+ LS  G
Sbjct: 65  GENAKGATAYVTLEPCAHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAG 124

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I     ++  + +     +L R  +    + LK+A+S D    MA   S  ITG  +++ 
Sbjct: 125 IESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDARSD 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231
           V  +RA+S A+L    TV+ADDP L  R +   E+            P+R+ILD   ++ 
Sbjct: 185 VQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPENLKTGYKKEWLRQPVRVILDSQHRIQ 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
              K+  T   +PV +V+   +P     F      II      LK+L+  L  R + +L 
Sbjct: 245 PTHKLFLTH--SPVWLVS--SEPRDLTGFPDFCEKIILPKENLLKELMRELGKRQINTLW 300

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           VE GA +A S I+++LVD +I+Y +  ++G+  
Sbjct: 301 VEAGANLAGSLIDAKLVDELIIYVAPKLLGDNA 333


>gi|168179301|ref|ZP_02613965.1| riboflavin biosynthesis protein RibD [Clostridium botulinum NCTC
           2916]
 gi|182669874|gb|EDT81850.1| riboflavin biosynthesis protein RibD [Clostridium botulinum NCTC
           2916]
          Length = 365

 Score =  202 bits (514), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 121/361 (33%), Positives = 196/361 (54%), Gaps = 23/361 (6%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL+ ++   G  + NP V  ++VK+  +IG G   Y G PHAEV AL EAGE+A+G
Sbjct: 7   YMEKALKLAKRGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGPHAEVYALREAGEKAKG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           AT YVTLEPCSHYG++PPCA+ I++ GI + ++ + DP+  V GRG+  L Q GI +V  
Sbjct: 67  ATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVTG 126

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +ME E K     ++    +K+  + LK A + D  I      S  ITG  ++ +VH +R 
Sbjct: 127 IMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATKTGESKWITGEEARYKVHQIRN 186

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII- 247
               I+VGIGT++ D+P LT R+   +  SP  II+D   ++ L+SKI++T     + I 
Sbjct: 187 DLSGIMVGIGTIIKDNPLLTTRIE--RGRSPKAIIVDSSLRIPLESKILETLNERTIYIA 244

Query: 248 -VTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAHS 301
              ++  P            ++  +  +     L +L+  L   GV S+L+EGG+ +  S
Sbjct: 245 ATKKHKSPSKKNVLENLGAKVLEFEENEEGKVPLNELMQYLGSEGVDSILLEGGSTLNFS 304

Query: 302 FINSRLVDSIILY---------RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +   +VD ++ +          S+ +IG  G+ S L++ +   N   ++ +  G D+ +
Sbjct: 305 ALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVES-LKDIF---NLQNLKFEKIGQDILI 360

Query: 353 E 353
           E
Sbjct: 361 E 361


>gi|218899272|ref|YP_002447683.1| riboflavin biosynthesis protein RibD [Bacillus cereus G9842]
 gi|218541932|gb|ACK94326.1| riboflavin biosynthesis protein RibD [Bacillus cereus G9842]
          Length = 370

 Score =  202 bits (514), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 117/324 (36%), Positives = 179/324 (55%), Gaps = 4/324 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ A + 
Sbjct: 3   DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMASQN 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 63  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D  I      S  ITG  ++  VH 
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKIATVTGESKWITGEEARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+    +H P+R++LD H +    S +I   L    
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVVLDTHLRTPPSSHVITDGLAPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 242 IIVGKDVKKEKISSYNSKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327
            +   + I+ Y S  +IG    P+
Sbjct: 302 KTNNFNEIVTYISPKLIGGKDAPT 325


>gi|228922109|ref|ZP_04085419.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837525|gb|EEM82856.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 360

 Score =  202 bits (513), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 125/350 (35%), Positives = 189/350 (54%), Gaps = 18/350 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  ++   G T+ NP V  +IV D  ++G G     G PHAE+ A+  A E+ARG 
Sbjct: 1   MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAEEQARGG 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPCSH+GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  +
Sbjct: 61  TIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            E E K     +    + KR  + +K  V+ D  I  +   S  IT   ++ +VH +R +
Sbjct: 121 CEEESKKMNEVFNKYILTKRPFVAIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNE 180

Query: 190 SDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + AILVG  TV  D+P LT R+ NG    +P+R+ILD   ++ +++K+I        I  
Sbjct: 181 NAAILVGANTVQEDNPSLTTRIPNG---RNPIRVILDSTLRIPMEAKVITDGEAPTWIFT 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           T N       A     + +         +L ++L +L  +GV+SLL+EGG  V  SFI +
Sbjct: 238 TSNHAAEKKKALENAGVKVFVTSGEKHINLYEMLDVLGEKGVSSLLIEGGGEVNASFIEN 297

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----------NFMCVRRDY 345
           +L+D +ILY +  +IG    PS +E   + K          +F  V +DY
Sbjct: 298 KLIDKLILYIAPKMIGGRMAPSFVEGAGITKMQDAIEFKDISFTQVGKDY 347


>gi|229192323|ref|ZP_04319287.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus ATCC 10876]
 gi|228591103|gb|EEK48958.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus ATCC 10876]
          Length = 379

 Score =  202 bits (513), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 117/324 (36%), Positives = 179/324 (55%), Gaps = 4/324 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AG+ 
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGIGAHLRAGEEHAEVHALQMAGQN 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 72  AKDATVYVTLEPCSHFGKTPPCCELLIERGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEQARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAIL+G+ TV+AD+P LT R+    +H P+R+ILD H +    S +I   L    
Sbjct: 192 YRHTHDAILIGVNTVIADNPHLTTRIPNGGKH-PIRVILDTHLRTPPSSHVITDGLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 251 IIVGKDVKKEKISSYESKNIAIFQMETKYIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327
            +   + I+ Y S  +IG    P+
Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPT 334


>gi|254428944|ref|ZP_05042651.1| riboflavin biosynthesis protein RibD [Alcanivorax sp. DG881]
 gi|196195113|gb|EDX90072.1| riboflavin biosynthesis protein RibD [Alcanivorax sp. DG881]
          Length = 387

 Score =  202 bits (513), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 126/351 (35%), Positives = 186/351 (52%), Gaps = 29/351 (8%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S+ D +FMS AL+ +R  +  T  NP V C++V+ G V+G G  A  G  HAE  AL
Sbjct: 1   MSFSAADHQFMSRALQLARHGLYTTDPNPRVGCVLVRGGAVVGEGFHARAGELHAERHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AG+ A+GATAYVTLEPCSH GR+ PCA  ++E G+ RVV  ++DP+ +V+G+GLQ L+
Sbjct: 61  AAAGDRAQGATAYVTLEPCSHTGRTGPCADALVEAGVARVVAAMEDPNPQVAGQGLQRLA 120

Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++E++ +     ++ R   +R +I +KIA S D    MA   S  ITG  +
Sbjct: 121 DAGIAVASGLLETQARDLNPGFIARMTRQRPYIRIKIAASVDGRTAMASGESQWITGPAA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ---------EHS---------PMR 221
           +  V  LRA+S A++ G+GTVLAD P  T R              EH+         P+R
Sbjct: 181 REDVQRLRARSSAVVTGVGTVLADRPSYTVRPAQWTLADYHGSPGEHNQAGRDWVRQPLR 240

Query: 222 IILDPHFKLSLDSKIIKTALLAP--VIIVTENDDPVLALAFRKKNINIIYCDCR----DL 275
           +ILD   +   D  ++     AP   ++V     P    A       +++        DL
Sbjct: 241 VILDRTLRTPPDVPVVS----APGHCLLVAGEQHPGRQNALESAGAEVMHLPASGSGIDL 296

Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           ++LL  L  R    +LVE GA +A +F+   L D I++Y +  ++G    P
Sbjct: 297 QQLLIELNRRECNEVLVECGATLAGAFVREGLFDEILVYMAPALLGSSARP 347


>gi|166710620|ref|ZP_02241827.1| riboflavin-specific deaminase; 5-amino-6-uracil reductase
           [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 369

 Score =  202 bits (513), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 128/360 (35%), Positives = 193/360 (53%), Gaps = 12/360 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S+ D R+M+ ALR +      T  NP V C+IV+DG+ +G G     G PHAEV AL  
Sbjct: 8   ASADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRA 67

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPC+HYGR+PPCA  +IE G+ RVV  + DP  +V+G G   L   
Sbjct: 68  AGELARGATAYVTLEPCAHYGRTPPCALALIEAGVTRVVAAMADPFPQVNGGGFALLRDA 127

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI ++  +M ++ +     +L+R    R  + +K+  S D    +A   S  ITG  ++ 
Sbjct: 128 GIEVLSGVMHAQARTLNQGFLSRVERGRPWLRVKLGASLDGRTALASGQSKWITGADARA 187

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            V   RA++ AIL G GTVLADDP +T RL +      P+R++LD   + +L  K I+  
Sbjct: 188 DVQRWRARAGAILTGAGTVLADDPSMTVRLGDDTACVPPLRVVLDAGLR-TLACKNIRNG 246

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
             AP + +  +     AL         ++    DL  +L +L  R +  + VE GA ++ 
Sbjct: 247 -DAPTLYLHGDAVAATALDGAAYAALPLHVGRFDLSAVLALLAERDINEVHVEAGATLSG 305

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY----LEKNFMCVRRD--YFGSDVCLEY 354
           + + + LVD +++Y + +++G+     PL  G     + + +    RD    G D+ L Y
Sbjct: 306 ALLQAGLVDELLVYMAPVLLGD--TARPLLAGLGIETMAQRYELQLRDVRQLGQDLRLHY 363


>gi|126666704|ref|ZP_01737681.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
           C-terminal [Marinobacter sp. ELB17]
 gi|126628749|gb|EAZ99369.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
           C-terminal [Marinobacter sp. ELB17]
          Length = 371

 Score =  202 bits (513), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 129/363 (35%), Positives = 190/363 (52%), Gaps = 17/363 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ D  FM+ A++ +      T  NP V C+I +   ++G       G  HAEV+AL +
Sbjct: 2   ITTRDRAFMARAVQLAWRGRYSTHPNPRVGCVIARGDRILGESWHERAGEAHAEVRALSQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  ARG+TAYVTLEPCSH+GR+PPCA+ +IE G+ RV     DP+  VSGRGL+ L   
Sbjct: 62  AGTSARGSTAYVTLEPCSHFGRTPPCAKALIEAGVARVFAATLDPNPNVSGRGLEMLRAA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V   ++  E       ++ R    R  + LK+A S D    MA   S  ITG  S++
Sbjct: 122 GIRVHVGLLAGEAAKLNPGFMKRMTSGRPWVRLKMAASLDGRTAMASGESQWITGPESRS 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--------HSPMRIILDPHFKLSLD 233
            V  LRA SDAIL G+GTVLADDP LT R   + +          P+R+I D   +    
Sbjct: 182 DVQRLRAMSDAILTGVGTVLADDPSLTVRREEMGDIGSATEPGRQPLRVIADRDTRTPAS 241

Query: 234 SKIIKTALL----APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
           +KI +   +    A   + T     + AL  R + +   +    ++ ++L  L   G+  
Sbjct: 242 AKIFRGGKVQVFCATASLATSAAQDLAALGIRLRGV-AWHDKGVNVAEMLDTLGDIGINE 300

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYF 346
           +LVE G  +A SFI+  LVD + LY++ + +G  G P+   PLE    +  +  + R   
Sbjct: 301 VLVEAGPTLAGSFISENLVDELWLYQAPVFLGSTGRPTANLPLESMADKIQWQVLDRRQL 360

Query: 347 GSD 349
           G+D
Sbjct: 361 GAD 363


>gi|320540315|ref|ZP_08039967.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Serratia symbiotica str. Tucson]
 gi|320029635|gb|EFW11662.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Serratia symbiotica str. Tucson]
          Length = 371

 Score =  202 bits (513), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 129/336 (38%), Positives = 183/336 (54%), Gaps = 26/336 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A + +R     T+ NP+V C+IV+DG ++G G     G PHAEV AL  AGE+
Sbjct: 4   DVFYMARAFKLARLGRFTTAPNPNVGCVIVRDGEIVGEGYHLRAGEPHAEVHALCMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+ +V+GRGL  L Q GI +
Sbjct: 64  ARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVTAMQDPNPQVAGRGLYQLQQAGIEV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R      ++ LK+AVS D    MA   S  IT   ++  V  
Sbjct: 124 CHGLMLAEAEAVNPGFLKRMRTGFPYVQLKLAVSLDGRTAMASGESQWITSSQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L         QE+   P RIILD   +++   
Sbjct: 184 LRAQSAAILSTSATVLADDPALTVRWDELDAETQSLYPQENLRQPWRIILDSQNRVTPQH 243

Query: 235 KIIKT------ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           ++++       A L P       D  V  L F      +      DL  ++  L  R V 
Sbjct: 244 RVVQQPGATWLARLQPDKQAWPQD--VEQLIFPAHGGGV------DLVVMMMHLAKRQVN 295

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           S+ VE GA ++ + + + LVD ++LY +  ++G+ G
Sbjct: 296 SIWVEAGAQLSGALLQAVLVDELVLYLAPKLLGDDG 331


>gi|109897636|ref|YP_660891.1| riboflavin biosynthesis protein RibD [Pseudoalteromonas atlantica
           T6c]
 gi|109699917|gb|ABG39837.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Pseudoalteromonas atlantica T6c]
          Length = 372

 Score =  202 bits (513), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 122/338 (36%), Positives = 190/338 (56%), Gaps = 24/338 (7%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62
           S+ DA+ M+ A+R +      TS NP+V C+I    G ++G+G     G PHAE+ A+ +
Sbjct: 5   SALDAKMMALAIRLAEKGQYTTSPNPNVGCVITDAQGNIVGQGWHQKAGTPHAEIHAIAQ 64

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE  +GATAYVTLEPC+H+GR+ PC++ +++ G++RVV  + DP+  V+G GLQ LS  
Sbjct: 65  AGERTKGATAYVTLEPCNHHGRTGPCSEALLDAGVKRVVAAMVDPNPLVAGSGLQKLSDA 124

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ V   ++ESE K     ++ R    +  +T+K+A S D    +    S  ITG +++ 
Sbjct: 125 GVQVSSGLLESEAKALNRGFIKRMQTGKPWVTVKLASSLDGKTALNNGESQWITGPLARE 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-------NGLQE---HSPMRIILDPHFKLS 231
            V   RAQS AIL G GTVLAD+P L  R        N L E     P+R++LD   ++ 
Sbjct: 185 DVQRHRAQSCAILSGSGTVLADNPSLNVRYSELGFARNALAEVNLRQPVRVLLDGRNQMR 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLA-----LAFRKKNINIIYCDCRDLKKLLTILVGRG 286
            D  +   AL +P++I+  N  P  A     +   +   N    D +D+ K L     RG
Sbjct: 245 PDLHLF--ALSSPIVII--NSQPNTAEFPDHVEQYQAQSNGAQLDLQDVMKHLG---QRG 297

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
              + VE GA +A + + ++L+D +ILY++  ++G+ G
Sbjct: 298 FNHIWVEAGAKLAGALLQNKLIDELILYQAPKLLGDKG 335


>gi|228935432|ref|ZP_04098250.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228824184|gb|EEM69998.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 379

 Score =  202 bits (513), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 118/325 (36%), Positives = 182/325 (56%), Gaps = 6/325 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 12  DQEYMRIALQLAEETCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +I+  ++RVV+   D +  VSG G + L + GI +
Sbjct: 72  AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            R   DAILVG+ TV+AD+P LT R+ NG Q  +P+R+ILD + +    S +I  +L   
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTNLRTPPSSHVITDSLAPT 249

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            I+V  + +     ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF
Sbjct: 250 WIMVGRDVNKEKIASYESENITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 309

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327
           + ++  + II Y S  +IG    P+
Sbjct: 310 LQTKYFNEIITYISPKLIGGSKAPT 334


>gi|228953669|ref|ZP_04115709.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229070840|ref|ZP_04204068.1| Riboflavin biosynthesis protein [Bacillus cereus F65185]
 gi|229179672|ref|ZP_04307022.1| Riboflavin biosynthesis protein [Bacillus cereus 172560W]
 gi|228603778|gb|EEK61249.1| Riboflavin biosynthesis protein [Bacillus cereus 172560W]
 gi|228712230|gb|EEL64177.1| Riboflavin biosynthesis protein [Bacillus cereus F65185]
 gi|228805903|gb|EEM52482.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 350

 Score =  202 bits (513), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 123/342 (35%), Positives = 187/342 (54%), Gaps = 14/342 (4%)

Query: 23  GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
           G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARG T YVTLEPCSH+
Sbjct: 3   GQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGGTIYVTLEPCSHH 62

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAY 141
           GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  + E E K     +
Sbjct: 63  GRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEVF 122

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
               + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R ++ AILVG  TV 
Sbjct: 123 NKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTVQ 182

Query: 202 ADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
            D+P LT R+ NG    +P+R+ILD   ++ +++ ++        I  T N       A 
Sbjct: 183 KDNPSLTTRIPNG---RNPIRVILDSTLRIPMEANVVTDREAPTWIFTTSNHAEEKKKAL 239

Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
               + +         +L ++L +L  +GV+SLL+EGG  V  SFI ++L+D IILY + 
Sbjct: 240 ENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIENKLMDKIILYFAP 299

Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFG-SDVCLEYIGKN 358
            +IG    PS     ++E   +   +D     D+    IGK+
Sbjct: 300 KIIGGRLAPS-----FVEGTGITKMKDAIEFKDISFTQIGKD 336


>gi|91776267|ref|YP_546023.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Methylobacillus flagellatus KT]
 gi|91710254|gb|ABE50182.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Methylobacillus flagellatus KT]
          Length = 377

 Score =  202 bits (513), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 133/329 (40%), Positives = 182/329 (55%), Gaps = 12/329 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D  +M+ ALR +   +  TS NP V C+IVKDG V+GRG     G PHAEV AL  A
Sbjct: 13  SASDHHYMNLALREAARGLYSTSPNPRVGCVIVKDGKVVGRGAHLRAGEPHAEVHALRMA 72

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G +A GA AYVTLEPCSH+GR+PPCA  +++ G+RRVV  + DP+  VSG GL+ LS  G
Sbjct: 73  GGQAAGADAYVTLEPCSHFGRTPPCADALVKAGVRRVVAAMQDPNPLVSGSGLKRLSTHG 132

Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++E E +     +++R   +R  +  KIA S D   G+    S  ITG  ++  
Sbjct: 133 IEVAYGLLEHEARELNAGFISRMTRQRPWVRSKIAASLDGKTGLNNGQSKWITGPSARQH 192

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL--QEH--SPMRIILDPHFKLSLDSKIIK 238
           V   RAQS AIL G+GTVLADDP LT R   L  Q H   P R+I+D   +    +  ++
Sbjct: 193 VQQWRAQSCAILTGVGTVLADDPMLTVRDVTLLQQRHGVQPWRVIVDSQLRTPPAAATLQ 252

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294
                 V+I      PV   A R     +I         DL+ LL  L  R +  ++VE 
Sbjct: 253 AGR---VLIAHAASLPVQEKALRDAGAELIAMPGPSGRVDLEALLHALAQRQINDVMVEA 309

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GA +  S +   LVD ++LY + +++G G
Sbjct: 310 GARLNGSLLYGGLVDELLLYYAPVLLGGG 338


>gi|148828121|ref|YP_001292874.1| hypothetical protein CGSHiGG_08285 [Haemophilus influenzae PittGG]
 gi|148719363|gb|ABR00491.1| hypothetical protein CGSHiGG_08285 [Haemophilus influenzae PittGG]
          Length = 372

 Score =  202 bits (513), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 123/333 (36%), Positives = 184/333 (55%), Gaps = 16/333 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           SS D  FM  AL  +      T+ NPSV C++VK+G ++G G     G PHAE  AL +A
Sbjct: 5   SSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATAYVTLEPC+HYGR+PPCA  +IE G+ +V+  + DP+ +V+G+GL+ LS  G
Sbjct: 65  GENAKGATAYVTLEPCAHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAG 124

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I     ++  + +     +L R  +    + LK+A+S D    MA   S  ITG  +++ 
Sbjct: 125 IESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDARSD 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLS 231
           V  +RA+S A+L    TV+ADDP L  R +   E             P+R+ILD   ++ 
Sbjct: 185 VQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPETLKTEYKKEDLRQPVRVILDSQHRIQ 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
              K+  T   +PV +V+   +P     F      II      LK+L+  L  R + +L 
Sbjct: 245 PTHKLFLTH--SPVWLVSS--EPRDLTGFPDFCEQIILPKENLLKELMRELGKRQINTLW 300

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           VE GA +A S I+++LVD +I+Y +  ++G+  
Sbjct: 301 VEAGANLAGSLIDAKLVDELIIYIAPKLLGDNA 333


>gi|238783633|ref|ZP_04627654.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
           bercovieri ATCC 43970]
 gi|238715511|gb|EEQ07502.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
           bercovieri ATCC 43970]
          Length = 369

 Score =  202 bits (513), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 124/327 (37%), Positives = 179/327 (54%), Gaps = 14/327 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     T  NP+V C++V+DG ++G G     G PHAEV AL  AGE+
Sbjct: 4   DEFYMARAFELARMGRFTTPPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 64  ARGATAYVTLEPCSHHGRTPPCADALVAAGVIRVVAAMQDPNPQVAGRGLYKLKQAGIAV 123

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
            RA+S AIL    TVLADDP LT R + L   +           P+RIILD H +++   
Sbjct: 184 FRAESAAILSTSATVLADDPSLTVRWDELDSETQGWYPQARLRQPIRIILDSHNRVTPHH 243

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           K+I+     P  +     D  L  A  ++ +   + +  DL  L+  L  R + S+ VE 
Sbjct: 244 KVIQQD--GPCWLARVEADEQLWPANVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321
           G  +A + + + +VD +ILY +  ++G
Sbjct: 302 GPQLAGALLQAGVVDELILYIAPKLLG 328


>gi|317047149|ref|YP_004114797.1| riboflavin biosynthesis protein RibD [Pantoea sp. At-9b]
 gi|316948766|gb|ADU68241.1| riboflavin biosynthesis protein RibD [Pantoea sp. At-9b]
          Length = 370

 Score =  202 bits (513), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 125/334 (37%), Positives = 180/334 (53%), Gaps = 26/334 (7%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D R+M+ AL  +R     T+ NP+V C+IV+DG ++G G     G PHAEV AL  AGE
Sbjct: 2   IDERYMARALELARRGCFTTTPNPNVGCVIVRDGEIVGEGWHHRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +ARGATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KARGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIA 121

Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   +M +  +     +L R       I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMNAAEAINRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSAAARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLSLD 233
             RAQS AIL    TVLAD+P LT R N L           Q   P+R+++D   +++  
Sbjct: 182 RFRAQSSAILTTSATVLADNPSLTVRWNELNDEVRQQLDEQQLRQPVRVVIDSQQRVTPQ 241

Query: 234 SKII----KTALL--APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
            ++I    +T L+  AP   V       +A+  R+  +        DL  ++ +L  R +
Sbjct: 242 HRLIDQPGETWLMRSAPDQHVWPESVTQIAVPQRESQL--------DLVAMMMLLGQRQI 293

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            S+ VE GA +A + + + LVD +I+Y +  ++G
Sbjct: 294 NSVWVEAGAKLAGALLQAGLVDELIVYLAPKLLG 327


>gi|325266968|ref|ZP_08133639.1| riboflavin biosynthesis protein RibD [Kingella denitrificans ATCC
           33394]
 gi|324981709|gb|EGC17350.1| riboflavin biosynthesis protein RibD [Kingella denitrificans ATCC
           33394]
          Length = 369

 Score =  202 bits (513), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 125/343 (36%), Positives = 182/343 (53%), Gaps = 14/343 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  DA  M  A+  +      TS NP V C+I   G ++G+G     G PHAEV AL +A
Sbjct: 9   SELDAAHMRRAIELAWLGRFSTSPNPRVGCVIAHGGQIVGQGFHVQAGFPHAEVHALRQA 68

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G+ ARGATAYVTLEPCSH+GR+PPCA+ +I  G+ RVV+ + DP+  V+G+G+  L   G
Sbjct: 69  GDLARGATAYVTLEPCSHHGRTPPCAEGLIAAGVARVVIAMGDPNPLVAGKGIALLQAAG 128

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++  E +     +L+R   +R  ++LKIA S D   G++   S  ITG  ++  
Sbjct: 129 ISVQCGLLADEARALNRGFLSRIERRRPFVSLKIAASLDGKTGLSDGRSQWITGEEARAD 188

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           V   RAQS A+L G+GTVL D+P L  R   +    P+R+ILD   +    S +I+    
Sbjct: 189 VQRQRAQSCAVLTGVGTVLHDNPRLNVRQFPIVRQ-PLRVILDSRLRTPESSHMIQDG-- 245

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYC----DCR-DLKKLLTILVGRGVTSLLVEGGAA 297
               I T    P L  A+   N+++  C    D R  L  +L  L   G+  L+VE G  
Sbjct: 246 QATQIFTLQKQPALFAAY--PNVSVRQCAANADGRIALPDVLARLAEDGIGELMVEAGCT 303

Query: 298 VAHSFINSRLVDSIILYRSQIVIG---EGGIPSPLEEGYLEKN 337
           +  +F+   L D I+ Y+S  ++G   +     P     L++N
Sbjct: 304 LNSAFLQQNLADEIVYYQSAKILGSNAQAAFSLPENPAVLQQN 346


>gi|300818262|ref|ZP_07098473.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 107-1]
 gi|300529153|gb|EFK50215.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 107-1]
          Length = 367

 Score =  202 bits (513), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 192/371 (51%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V L
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQL 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
            I++           E+     + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 HIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|315616646|gb|EFU97263.1| riboflavin biosynthesis protein RibD [Escherichia coli 3431]
          Length = 367

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 193/371 (52%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I+ G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIDAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V L
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQL 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++   
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++           E+     + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|51246637|ref|YP_066521.1| riboflavin biosynthesis protein (RibD) [Desulfotalea psychrophila
           LSv54]
 gi|50877674|emb|CAG37514.1| probable riboflavin biosynthesis protein (RibD) [Desulfotalea
           psychrophila LSv54]
          Length = 401

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 129/358 (36%), Positives = 190/358 (53%), Gaps = 10/358 (2%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D ++M  AL  +R   G TS NP V  +IV DG V+GRG     G PHAEV AL +AGE
Sbjct: 38  LDQKYMLLALAEARRGQGRTSPNPCVGAIIVGDGSVVGRGYHKKAGTPHAEVHALRDAGE 97

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +A GATAYVTLEPCSH GR+PPC   + + G+ RVVV + DP+  V+GRG+Q+L   GI 
Sbjct: 98  KAAGATAYVTLEPCSHTGRTPPCCVALAKAGVLRVVVGMTDPNPLVNGRGVQYLRDHGIE 157

Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   + E++ +     ++ +       + +K  +S D  +         ITG  S   VH
Sbjct: 158 VSTGICEADCREINRPFIKKITTGTPWMIMKAGISLDGRMNYKEGEPGWITGPESGALVH 217

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR   DAI+VG GTV+ D+P LT RL G     P+ +ILD   K   D+ +   A    
Sbjct: 218 QLRDSVDAIMVGSGTVMIDNPSLTTRLPGGGGRDPVAVILDSQLKTDPDAHVYSAASGRS 277

Query: 245 VIIVTEND-DPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           V++  ++D D      F ++ + ++      +  DL +++ +L  R + S+LVEGGA + 
Sbjct: 278 VLVFCQHDVDEGRKEVFAERGVIVLPVSSLPEGLDLGEIVAVLGERDICSVLVEGGAQLH 337

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLE 353
              +  RL D + L+++ +  G+GG+      PL           VRR   G+ + LE
Sbjct: 338 GQLLQKRLYDYLYLFQAPLFAGDGGVSLVTGCPLAGREDAIALRGVRRSVLGAHLLLE 395


>gi|317128514|ref|YP_004094796.1| riboflavin biosynthesis protein RibD [Bacillus cellulosilyticus DSM
           2522]
 gi|315473462|gb|ADU30065.1| riboflavin biosynthesis protein RibD [Bacillus cellulosilyticus DSM
           2522]
          Length = 362

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 125/324 (38%), Positives = 182/324 (56%), Gaps = 14/324 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D ++M  A+  ++   G T+ NP V  +IV +  ++G G     G  HAE  A+E A +
Sbjct: 1   MDNKYMKMAIELAKVTEGHTTPNPVVGAVIVNNNQIVGFGAHLKAGEHHAEKHAIEMAKD 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +  GAT YVTLEPCSHYGR+PPCA  +IE GI++V++   DP+ +VSGRG++ L   GI 
Sbjct: 61  KTEGATIYVTLEPCSHYGRTPPCADAVIEAGIKKVIIGSVDPNPKVSGRGIKKLEDAGIE 120

Query: 126 VDR--MMESEGK---IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           V+   M E   K   +F H   T    K+  +TLK A S D  I      S  IT   S+
Sbjct: 121 VEVGCMKEETDKLNDVFFHFVNT----KKPFVTLKSATSLDGKIATRTGESQWITSEESR 176

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKT 239
             VH LR ++DAILVGI TV+ DDP LT RL +G +  +P+R+ILD   ++ + +K+I  
Sbjct: 177 KDVHQLRHKNDAILVGINTVIKDDPALTTRLPDGGK--NPIRVILDRELRIPMTAKLIND 234

Query: 240 ALLAPVIIVTE--NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                 +I T   N + +  L  +   + I+  D  ++  LL +L    +TSLLVEGG  
Sbjct: 235 HASLTWVITTRLANKEKIDLLRDKGTKVLILDDDKIEISSLLYLLGEHNITSLLVEGGGT 294

Query: 298 VAHSFINSRLVDSIILYRSQIVIG 321
           V  SF+ S     +I+Y + ++IG
Sbjct: 295 VNDSFLKSGEFQQVIVYIAPLLIG 318


>gi|326406537|gb|ADZ63608.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-5-phosphoribosylamino uracil reductase
           [Lactococcus lactis subsp. lactis CV56]
          Length = 362

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 125/362 (34%), Positives = 198/362 (54%), Gaps = 22/362 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++   G  + NP V  LIVK+G +IG+G     G  HAE+ A ++  E 
Sbjct: 4   DEYYMDLAIVLAKKGGGNVNPNPQVGALIVKEGRIIGQGYHEKYGKAHAEINAFKDCNES 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-- 124
             GA  YVTLEPC+H G+ PPC + II+ GI+RVV+   DP+  VSG+G++ + + GI  
Sbjct: 64  PEGAMLYVTLEPCAHQGKQPPCFEAIIKNGIKRVVIGHLDPNPLVSGKGIKAMREAGIEV 123

Query: 125 ---IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
              ++++  E   KIF + Y+++ +    ++ +K A++ D  I  +   S  ITG I++ 
Sbjct: 124 SLNVLEKECEELNKIFFY-YVSQGL---PYVMMKYAMTLDGKIATSAGQSKWITGEIARQ 179

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
           +VH  R++  AI++G+ T++ DDP+L+ RL NG    +P+RII D H +  L SKI+ TA
Sbjct: 180 KVHQDRSRFMAIMIGVETLILDDPQLSVRLENG---KNPIRIICDTHLRSPLASKIVSTA 236

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGA 296
              P II T   DP     F K    II   C +    LK+L   L  +G+ S+++EGG 
Sbjct: 237 TEIPTIIATAESDPEKQAPFLKAGCEIILVSCLEGRLNLKELTKKLGEKGIDSIILEGGG 296

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC-----VRRDYFGSDVC 351
            +  S + + +V  +  Y +  + G    PSP+E   +E+          +  Y G D+ 
Sbjct: 297 TLNASALKAGIVQKVQTYIALKIFGGKEAPSPVEGHGIEQPNQAYLLEGAQITYLGEDIL 356

Query: 352 LE 353
           LE
Sbjct: 357 LE 358


>gi|301156580|emb|CBW16051.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Haemophilus parainfluenzae T3T1]
          Length = 376

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/333 (36%), Positives = 180/333 (54%), Gaps = 16/333 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D +FM  AL  +      T+ NPSV C++VK+G ++G+G     G PHAE  AL +A
Sbjct: 6   SPDDVKFMQLALELAAKGQYTTTPNPSVGCVLVKNGEIVGKGFHFKTGQPHAERVALADA 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE+A+GATAYVTLEPCSHYGR+PPCA  +IE G+ RVV  + DP+ +V+G+GL+ L+  G
Sbjct: 66  GEKAKGATAYVTLEPCSHYGRTPPCALGLIEAGVSRVVAAMADPNPQVAGKGLKMLADAG 125

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I     ++  + +     +L R    + ++ LK+A+S D    MA   S  ITG  ++  
Sbjct: 126 IPSAVNLLNEQAEALNKGFLKRMRTGKPYVQLKLAMSLDGRTAMASGESKWITGEAARAD 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLS 231
           V  +RA++ A+L    TVLADDP L  R N   +             P+RIILD   ++ 
Sbjct: 186 VQKMRAKATALLSTSATVLADDPSLNVRWNQFPDDLKAEYAEDTVRQPIRIILDSKNRVQ 245

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
              ++  T   +PV +V     P     F      I+  +  D   L+T L  R V S+ 
Sbjct: 246 PSHQLFHTH--SPVWLV--GSIPRDMSVFPDFCEQILLPENYDFDLLMTELGKRQVNSVW 301

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           VE GA +A S I    VD +I+Y +  ++G+  
Sbjct: 302 VEAGANLAGSLIEQHAVDELIIYVAPKLLGDNA 334


>gi|163941852|ref|YP_001646736.1| riboflavin biosynthesis protein RibD [Bacillus weihenstephanensis
           KBAB4]
 gi|163864049|gb|ABY45108.1| riboflavin biosynthesis protein RibD [Bacillus weihenstephanensis
           KBAB4]
          Length = 370

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 117/324 (36%), Positives = 178/324 (54%), Gaps = 4/324 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE 
Sbjct: 3   DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKDGKIVGMGAHMRAGEEHAEVHALHMAGER 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L + GI +
Sbjct: 63  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPLVSGNGKRRLEEVGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 123 TTGVLEAEATLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATITGESKWITGEEARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TVL D+P LT R+    +H P+R+ILD H +    S +I   L    
Sbjct: 183 YRHIHDAILVGVNTVLTDNPHLTTRIPNGGKH-PIRVILDTHLRTPPSSHVITDGLTPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +     ++   NI +     +  +++ +L++L  + + SL VEGG  V  +F+
Sbjct: 242 IIVGKDVNKEKIASYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFVEGGQTVHANFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327
            +   + I+ Y S  +IG    P+
Sbjct: 302 KTNSFNEIVTYISPKLIGGKDAPT 325


>gi|229134920|ref|ZP_04263727.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST196]
 gi|228648595|gb|EEL04623.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST196]
          Length = 379

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 117/324 (36%), Positives = 177/324 (54%), Gaps = 4/324 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE 
Sbjct: 12  DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKDGKIVGMGAHMRAGEEHAEVHALHMAGER 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L + GI +
Sbjct: 72  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPLVSGNGKRKLEEVGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEATLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TVL D+P LT R+    +H P+R+ILD H +    S +I   L    
Sbjct: 192 YRHIHDAILVGVNTVLTDNPHLTTRIPNGGKH-PIRVILDTHLRTPPSSHVITDGLTPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +      +   NI +     +  +++ +L++L  + + SL VEGG  V  +F+
Sbjct: 251 IIVGKDVNKEKIAPYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFVEGGQTVHANFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327
            +   + I+ Y S  +IG    P+
Sbjct: 311 KTNSFNEIVTYISPKLIGGKDAPT 334


>gi|258510931|ref|YP_003184365.1| riboflavin biosynthesis protein RibD [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477657|gb|ACV57976.1| riboflavin biosynthesis protein RibD [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 371

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 125/363 (34%), Positives = 191/363 (52%), Gaps = 22/363 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D R+M  AL  +R   G TS NP V  ++V  G V+G+G     G PHAEV AL  AG+ 
Sbjct: 4   DERYMRMALEVARLGEGQTSPNPMVGAIVVNGGRVVGQGAHLMAGTPHAEVHALRMAGDA 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YVTLEPC+H+GR+PPC   I+  G+RRVVV   D D R +G G++ L + GI V
Sbjct: 64  AQGATLYVTLEPCNHHGRTPPCTDAILATGVRRVVVAALDVDPRTAGLGVKRLQEAGIEV 123

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E +     +  R    R ++  K+A++    +  +   S  +TG  ++  VH 
Sbjct: 124 TVGVLEAEARELNRHFFHRVTTGRPYVVYKVAMTLSGHVAASSGHSQYVTGLAAREDVHW 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCR---LNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           LR    AI VG+GTVL DDPELT R       ++  P+R++ D   +    +++    L 
Sbjct: 184 LRQIIPAIGVGVGTVLTDDPELTARDLAAGTRRDRQPLRVVFDTRLRTPPTARL----LA 239

Query: 243 AP---VIIVTEN--DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVE 293
           AP   +++ +E     P       + ++ I     R    DL   L+ +   G  +LLVE
Sbjct: 240 APGRTLLLTSERMASAPAARRLAEQGDVRIAPVAERDGHLDLHAALSAIAAEGANALLVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEK-NFMCVRRDYFGSD 349
           GG  +A + + SRL+D I +Y +  ++  GG+P+      +G  E      VR D+ G D
Sbjct: 300 GGPTLASALLKSRLIDEIRVYLAPKLLA-GGLPAFAGAFTQGMAEAVELHGVRSDWVGDD 358

Query: 350 VCL 352
           + +
Sbjct: 359 LVV 361


>gi|229180391|ref|ZP_04307734.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus 172560W]
 gi|228603138|gb|EEK60616.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus 172560W]
          Length = 379

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 117/324 (36%), Positives = 178/324 (54%), Gaps = 4/324 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AG+ 
Sbjct: 12  DQEYMRIALLLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 72  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+    +H P+R++LD H +    S +I   L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVVLDTHLRTPPSSHVITDGLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 251 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327
            +   + I+ Y S  +IG    P+
Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPT 334


>gi|237730390|ref|ZP_04560871.1| riboflavin bifunctional biosynthesis protein ribD [Citrobacter sp.
           30_2]
 gi|226905929|gb|EEH91847.1| riboflavin bifunctional biosynthesis protein ribD [Citrobacter sp.
           30_2]
          Length = 367

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 136/369 (36%), Positives = 193/369 (52%), Gaps = 32/369 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ +      T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DELYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AQGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEVEQLNKGFLKRMRTGFPYLQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP+LT R + L E +           P+RI+LD   +++   
Sbjct: 183 LRAQSHAILTSSATVLADDPQLTVRWSELGESTQASYPQEELRQPIRIVLDSQNQVTPAH 242

Query: 235 KIIKTALLAPVIIVTENDDP------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           +I++        IV   DDP      V +L   + N ++      DL  L+  L  + + 
Sbjct: 243 RIVQQP--GETWIVRTEDDPRSWPETVRSLKVPEHNGHL------DLVVLMMQLGKQQIN 294

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRR 343
           S+ VE G  +A + + + LVD +I+Y +  ++G        +P  LE+     +F     
Sbjct: 295 SIWVEAGPTLAGALLQAGLVDELIVYVAPKLLGSDARGLCVLPG-LEKLADAPHFKFNEI 353

Query: 344 DYFGSDVCL 352
              G DVCL
Sbjct: 354 RQVGPDVCL 362


>gi|332558836|ref|ZP_08413158.1| riboflavin biosynthesis protein RibD [Rhodobacter sphaeroides WS8N]
 gi|332276548|gb|EGJ21863.1| riboflavin biosynthesis protein RibD [Rhodobacter sphaeroides WS8N]
          Length = 356

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 131/320 (40%), Positives = 189/320 (59%), Gaps = 7/320 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ ALR     +G T  NP+V C+IVK G V+GRG T  GG PHAE  AL +AG  A GA
Sbjct: 1   MAHALRLGARGLGRTWPNPAVGCVIVKAGRVVGRGWTRPGGRPHAEPVALAQAGAAALGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DRM 129
           TAYVTLEPCSH+GR+PPCA+ +I  G+ RVV    DPD RVSGRG   L + GI V +R+
Sbjct: 61  TAYVTLEPCSHHGRTPPCAEALIAVGLARVVTATGDPDPRVSGRGHAMLREAGIAVTERV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E+E ++    +L R  E    +TLK+A + D  I  A   S  ITG +++  VH +R +
Sbjct: 121 LEAEARVAHAGFLKRVTEGLPFVTLKLAATLDGRIATASGESRWITGSLARRAVHAMRMR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DA++VG+GT +ADDP+L+ R  G   H P+RI++D   + + DS++ +TA   PV +  
Sbjct: 181 HDAVMVGVGTAIADDPDLSVRDLG-SGHQPVRIVVDSLLRHAPDSRLGRTARQVPVWLCH 239

Query: 250 ENDDPVLALAFRKKNINIIY-C----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
               P  A A    +  I+  C    D  + + +L  L   G+T +  EGGA +  + + 
Sbjct: 240 GPAAPEAARAAWAASGAILLECPAGPDGLEAEAVLRRLAAEGLTRIFCEGGARLGAALVR 299

Query: 305 SRLVDSIILYRSQIVIGEGG 324
           + L D ++ + +  +IGE G
Sbjct: 300 AGLCDELVTFTAGKLIGEEG 319


>gi|295102179|emb|CBK99724.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Faecalibacterium prausnitzii L2-6]
          Length = 374

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 132/375 (35%), Positives = 200/375 (53%), Gaps = 28/375 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++ K+G +IG+G     G  HAE  AL    E+
Sbjct: 3   DKEYMRLALQLAKKGCGWTSPNPMVGAVVAKEGRIIGQGWHQRYGQAHAERNALASCTED 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            +GAT YVTLEPC HYG+ PPC   I+  GI RVVV   DP+  V+G+G+  L   GI +
Sbjct: 63  PQGATLYVTLEPCCHYGKQPPCVDAILGAGIHRVVVGSADPNPLVAGKGITILRAHGIDV 122

Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
            + +++ E     K+F H Y+T    KR  +++K A++ D  I      S  ITG I++N
Sbjct: 123 TENVLQEECDALNKVFFH-YIT---TKRPFVSMKYAMTMDGKIATYTGASKWITGEIARN 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V   R +   I+VG+GT+LADDP LTCR+ G ++  P+RII D H +  L S+++ TA 
Sbjct: 179 HVQRQRHRFRGIMVGVGTILADDPLLTCRIEGGRD--PVRIICDTHLRTPLQSQVVMTAK 236

Query: 242 LAPVIIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
             P I+ T   DP    A+++    ++    +C   +L +L+  L    + S+L+EGG  
Sbjct: 237 QVPTILATCCGDPEKQAAYQQDGCRVLCLEAHCGHVNLLQLMEQLGQEQIDSILLEGGGT 296

Query: 298 VAHSFINSRLVDSIILYRSQIVIG--------EG-GIPSPLEEGYLEKNFMCVRRDYFGS 348
           +  S + S +V  +  Y +  + G        EG G+P P +  +  KN    R +  G 
Sbjct: 297 LNWSALESGIVQQVQAYIAPKLFGGRDAKAPIEGAGVPLP-DAAFRLKN---SRLEQLGK 352

Query: 349 DVCLEYIGKNLCLQE 363
           D  +E   +  CL E
Sbjct: 353 DFLIESEVEYPCLPE 367


>gi|254486598|ref|ZP_05099803.1| riboflavin biosynthesis protein RibD [Roseobacter sp. GAI101]
 gi|214043467|gb|EEB84105.1| riboflavin biosynthesis protein RibD [Roseobacter sp. GAI101]
          Length = 356

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 131/334 (39%), Positives = 186/334 (55%), Gaps = 9/334 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL   R   G    NP+V C+IV+   ++GRG T  GG PHAE +AL +AG +A GA
Sbjct: 1   MALALSLGRRGQGTVWPNPAVGCVIVQGDRIVGRGWTQPGGRPHAEPEALAQAGAQAVGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
           T YVTLEPC+H G++PPCAQ +I+  + RVV+   D D RVSG+G+  L   GI VD  +
Sbjct: 61  TVYVTLEPCAHTGKTPPCAQALIDAQVARVVIACADSDPRVSGKGIAMLQAAGIAVDTGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E E +     +L+R    R  +TLK+A S D  I  A   S  IT   ++  VH +RA+
Sbjct: 121 LEDEARKDHIGFLSRIDIARPMVTLKLASSFDGRIATATGESQWITAGPARRLVHAMRAR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV- 248
            DA++VG GT   DDP LT R  G+    P RI++     L L  K+ +TA L PVI+  
Sbjct: 181 HDAVMVGGGTARQDDPSLTVRDIGITRQ-PARIVVSSRLDLPLSGKLAQTAALIPVILCH 239

Query: 249 TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
             + DP L   +++    +I C  R    D   +L  L   G+T +  EGG  +A S + 
Sbjct: 240 ATSADPHLVTTWQQLGATLIPCATRAGQLDPADILRKLADHGLTRIFCEGGGGLAASLLQ 299

Query: 305 SRLVDSIILYRSQIVIGEGGIPS--PLEEGYLEK 336
           + LVD ++ + + + IG  G+P+  PL    L K
Sbjct: 300 ADLVDHLVGFTAGLAIGADGLPAIGPLGLSQLGK 333


>gi|170021214|ref|YP_001726168.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli ATCC 8739]
 gi|188492525|ref|ZP_02999795.1| riboflavin biosynthesis protein RibD [Escherichia coli 53638]
 gi|194438906|ref|ZP_03070991.1| riboflavin biosynthesis protein RibD [Escherichia coli 101-1]
 gi|253774601|ref|YP_003037432.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254160480|ref|YP_003043588.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli B str. REL606]
 gi|300930291|ref|ZP_07145704.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 187-1]
 gi|312970509|ref|ZP_07784690.1| riboflavin biosynthesis protein RibD [Escherichia coli 1827-70]
 gi|169756142|gb|ACA78841.1| riboflavin biosynthesis protein RibD [Escherichia coli ATCC 8739]
 gi|188487724|gb|EDU62827.1| riboflavin biosynthesis protein RibD [Escherichia coli 53638]
 gi|194422200|gb|EDX38202.1| riboflavin biosynthesis protein RibD [Escherichia coli 101-1]
 gi|242376192|emb|CAQ30883.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Escherichia coli BL21(DE3)]
 gi|253325645|gb|ACT30247.1| riboflavin biosynthesis protein RibD [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972381|gb|ACT38052.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli B str. REL606]
 gi|253976591|gb|ACT42261.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli BL21(DE3)]
 gi|300461863|gb|EFK25356.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 187-1]
 gi|310337158|gb|EFQ02296.1| riboflavin biosynthesis protein RibD [Escherichia coli 1827-70]
 gi|323963400|gb|EGB58962.1| riboflavin biosynthesis protein RibD [Escherichia coli H489]
 gi|323972264|gb|EGB67474.1| riboflavin biosynthesis protein RibD [Escherichia coli TA007]
          Length = 367

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 134/367 (36%), Positives = 190/367 (51%), Gaps = 20/367 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V L
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQL 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++   
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           +I++          T+ D        R   I   +    DL  L+  L  + + S+ VE 
Sbjct: 243 RIVQQPGET-WFARTQEDSREWPETVRTLLIP-AHKGHLDLVVLMMQLGKQQINSIWVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349
           G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      + G D
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCSLPG-LEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|323138569|ref|ZP_08073637.1| riboflavin biosynthesis protein RibD [Methylocystis sp. ATCC 49242]
 gi|322396203|gb|EFX98736.1| riboflavin biosynthesis protein RibD [Methylocystis sp. ATCC 49242]
          Length = 376

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 146/368 (39%), Positives = 201/368 (54%), Gaps = 16/368 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           +P  + D  FM+AAL   R ++G T+ NP+V  L+V+DGI+I RG TA GG PHAE  AL
Sbjct: 7   IPYVATDEAFMAAALALGRRNMGRTAPNPAVGALVVRDGIIIARGWTAKGGRPHAEAIAL 66

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE ARGAT YVTLEPCSH+G +PPC   II  GI RVV  ++DPD RV+GRG Q L 
Sbjct: 67  AAAGEAARGATLYVTLEPCSHHGSTPPCVDAIIASGIARVVTAMEDPDPRVAGRGHQILR 126

Query: 121 QKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP---ITG 176
             GI V    E+      H  ++ R  + R  +TLK+A + D     AG    P   ITG
Sbjct: 127 DAGIDVFIGPEAAAARADHLGHILRVTKHRPMVTLKLAQTPDGY--AAGAAHDPRLRITG 184

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
            I+    H+ RA  DAI+VG GT   DDP +T RL GL+  +P+R++LD    LS  S++
Sbjct: 185 PIADAFTHVHRALHDAIMVGAGTAREDDPLMTVRLPGLEGVTPLRVVLDEKLALSPRSRV 244

Query: 237 IKTALLAPVIIVTENDDPVLAL-----AFRKKNINI-IYCDCRDLKKLLTILVGRGVTSL 290
             T+   P++++T  D P   +     A   + + + +Y    DL   L +L  RG+T +
Sbjct: 245 ASTSRETPLLVITALDVPDADVHRFMDATGAEVVKVPMYEGKLDLLAALRLLAERGITRV 304

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCVRRDYF 346
             EGG  VA S + + L D +IL+     +G  G P  +P     LE    +  +     
Sbjct: 305 FSEGGPRVAESLLTAGLADEVILHMGVKPLGRPGQPALTPKARTALENVSRYRLIESRML 364

Query: 347 GSDVCLEY 354
           G+D    Y
Sbjct: 365 GADQMTRY 372


>gi|304312168|ref|YP_003811766.1| Riboflavin biosynthesis bifunctional RIBD:
           diaminohydroxyphosphoribosylaminopyrimid ine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           oxidoreductase protein [gamma proteobacterium HdN1]
 gi|301797901|emb|CBL46123.1| Riboflavin biosynthesis bifunctional RIBD:
           diaminohydroxyphosphoribosylaminopyrimid ine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           oxidoreductase protein [gamma proteobacterium HdN1]
          Length = 389

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/347 (35%), Positives = 185/347 (53%), Gaps = 20/347 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++FD + MS AL+ +   +  T  NP V C+IV++G ++G G     G  HAEV ALE+A
Sbjct: 7   NAFDHQMMSRALQLAPRGLYTTHPNPRVGCVIVQNGAIVGEGWHQLAGQGHAEVLALEQA 66

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATAYVTLEPC+HYGR+PPCA  +I+ GI RVV  + DP+ RVSG G   L   G
Sbjct: 67  GERAKGATAYVTLEPCAHYGRTPPCANALIKAGIARVVGAMSDPNPRVSGGGYGLLRAAG 126

Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  D  +++ + +     ++ R       + +K  +SQD    MA   S  IT   ++  
Sbjct: 127 IKTDNGLLKQQAEALNPGFIKRMRGGLPWVRVKSGISQDARTAMACGESQWITSSPARAD 186

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-------------LNGLQEHSPMRIILDPHFK 229
           V  LRA+S+A++ G+ TVL+DDP LT R              +G     P+R+ILD   +
Sbjct: 187 VQRLRARSEAVITGVDTVLSDDPALTVRPASWPADDAPWGWPDGFTPIQPLRVILDSQLR 246

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGR 285
               +++++       +      +P    A R      I    R    DL  +L  L  +
Sbjct: 247 TPTSARLLREP--GQNVFAHIGSNPEREEALRACGATCISFPGRDGRVDLVPVLQWLAAQ 304

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
            V  +L+E GA+VA SFI + LVD  ++Y++  ++G    P+ + EG
Sbjct: 305 EVNEVLIEAGASVAGSFIEAGLVDEWVVYQAPCLLGSEARPALILEG 351


>gi|170756114|ref|YP_001782503.1| riboflavin biosynthesis protein RibD [Clostridium botulinum B1 str.
           Okra]
 gi|169121326|gb|ACA45162.1| riboflavin biosynthesis protein RibD [Clostridium botulinum B1 str.
           Okra]
          Length = 365

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/324 (35%), Positives = 182/324 (56%), Gaps = 11/324 (3%)

Query: 7   DARF-MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D  F M  AL+ +    G  + NP V  ++VK+  +IG G   Y G PHAEV AL EAGE
Sbjct: 3   DYNFHMEKALKLAERGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGPHAEVYALREAGE 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GAT YVTLEPCSHYG++PPCA+ I++ GI + ++ + DP+  V GRG+  L Q GI 
Sbjct: 63  KAKGATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIE 122

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V  +ME E K     ++    +K+  + LK A + D  I      S  ITG  ++ +V 
Sbjct: 123 VVTGIMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATRTGESKWITGEEARYKVQ 182

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            +R     I+VGI TV+ D+P LT R+ G +  SP  II+D + ++ L+SKI++T     
Sbjct: 183 QIRNDLSGIMVGIDTVIKDNPLLTTRIEGGR--SPKAIIVDSNLRIPLESKILETFNKRA 240

Query: 245 VII--VTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAA 297
           + I    ++ +P    A       ++  +  +     L +L+  LV  GV S+L+EGG+ 
Sbjct: 241 IYIAATKKHKNPSKKNALENLGAKVLEFEENEEGKVPLNELMQYLVSEGVDSILLEGGST 300

Query: 298 VAHSFINSRLVDSIILYRSQIVIG 321
           +  S +   +VD ++ + +  ++G
Sbjct: 301 LNFSALKEGIVDKVMCFIAPKIMG 324


>gi|225851435|ref|YP_002731669.1| riboflavin biosynthesis protein RibD [Persephonella marina EX-H1]
 gi|225645583|gb|ACO03769.1| riboflavin biosynthesis protein RibD [Persephonella marina EX-H1]
          Length = 365

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/329 (37%), Positives = 172/329 (52%), Gaps = 10/329 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D  FM  ALR +    GLT  NP+V  +IVKDG +IG+G     G PHAE +A+ +A   
Sbjct: 6   DEIFMKEALRLAELRKGLTHPNPTVGAVIVKDGKIIGKGFHKKAGMPHAEREAINDAIKK 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G    G+T YVTLEPC HYGR+PPC + II+  I+RVV+   DP+ +VSG+G++ L + G
Sbjct: 66  GFNLEGSTMYVTLEPCCHYGRTPPCTEAIIDRRIKRVVIATVDPNPQVSGKGVEILKKHG 125

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  V  +++ E +     +     EKR  I LKIA S D  I      S  IT   S+  
Sbjct: 126 IETVVGVLQDEARKLNEDFFVYIKEKRPFIHLKIAQSLDGKIATGTGSSKWITSEESRRY 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LR +S AI+VG  TVL D+P LT R     E  P+R++LD   K+  D  +      
Sbjct: 186 VHKLRRESTAIMVGTNTVLKDNPNLTVRYTE-TERQPLRVVLDKDLKIPEDYNVFNNE-A 243

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298
             V+  ++  D         K + I+    +    DL  +L  L    V  L +EGG  +
Sbjct: 244 KTVLFTSDIADRNKIKRLEDKGVQIVRLPLKNRRFDLNDILKNLYSLDVVHLFIEGGRDL 303

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS 327
              F+  +L D I ++ +  +IGE GI S
Sbjct: 304 ITQFLKEKLFDRISVFIAPKIIGEDGISS 332


>gi|108757223|ref|YP_632926.1| riboflavin biosynthesis protein RibD [Myxococcus xanthus DK 1622]
 gi|108461103|gb|ABF86288.1| riboflavin biosynthesis protein RibD [Myxococcus xanthus DK 1622]
          Length = 387

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 131/362 (36%), Positives = 189/362 (52%), Gaps = 13/362 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  AL  +   +G TS NP V  ++VK G +I RG     G  HAEV ALE AG  A+G
Sbjct: 31  FMRIALEEAAKGLGRTSPNPVVGAVLVKGGRIIARGYHKKAGSAHAEVVALEAAGARAKG 90

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           A  Y TLEPC HYGR+PPC+  IIE G+RRV+    DP+ +VSG+G+  + + G+ V   
Sbjct: 91  ADLYTTLEPCDHYGRTPPCSMAIIEAGVRRVICASADPNPKVSGKGVSRMRRAGLKVLTG 150

Query: 130 MESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + +E    L+    + +      +TLK AV+ D  +  A   S  +TG  ++  VH LR 
Sbjct: 151 VLAEDADRLNRPFFKMIRTGLPWVTLKAAVTLDGKLATATGDSRWVTGAPARAWVHRLRD 210

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
             D ILVG  TV  DDP+LT RL G     P+R+++D H +LS    I      A  ++ 
Sbjct: 211 SVDVILVGANTVRKDDPKLTTRLPGGGGKDPLRVVVDSHLRLSPGYTIFTQRSAARTVVA 270

Query: 249 T-ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           T E+ +   A  F  + +++     +    DLK LL  L   G   ++VEGGA +  SF+
Sbjct: 271 TLEDPEGRKARRFLAQGVDVWQLREKAGQVDLKALLRRLAKGGHNHVMVEGGAEMYGSFL 330

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-KNFMCVRRDYFGSDVCLEYIGKNLCLQ 362
             RL DS+ L+ +  +IG  G+    + G  E    + V+      D+  E  G ++ LQ
Sbjct: 331 RGRLADSLALFLAPKLIGSPGLSWAGDLGVKEMAQALAVK------DLAFERHGDDILLQ 384

Query: 363 EL 364
            L
Sbjct: 385 AL 386


>gi|220925141|ref|YP_002500443.1| riboflavin biosynthesis protein RibD [Methylobacterium nodulans ORS
           2060]
 gi|219949748|gb|ACL60140.1| riboflavin biosynthesis protein RibD [Methylobacterium nodulans ORS
           2060]
          Length = 388

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 135/335 (40%), Positives = 189/335 (56%), Gaps = 12/335 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI----VIGRGVTAYGGCPHAEVQA 59
           S+ D R+M  AL   R H+G T  NPSV  ++V        ++ +GVT  GG PHAE  A
Sbjct: 9   SALDRRYMRLALALGRRHLGETWPNPSVGAVLVAGPPGAERILAQGVTQPGGRPHAERIA 68

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           L  AGE ARGAT YVTLEPCSH+GR+ PCA  ++E GI RVV  + DPD RV+GRG   L
Sbjct: 69  LAAAGEAARGATLYVTLEPCSHHGRTSPCADAVVEAGIARVVSAMADPDPRVAGRGHGRL 128

Query: 120 SQKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
           S  GI V      +     H  ++TR    R  I LK+A + D      G G + ITG +
Sbjct: 129 SAAGIAVTVGTLGQEAARDHLGHVTRVTAGRPAIDLKLARTPDG-FAAGGTGRLIITGPL 187

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           +  ++HL+RA SDAI+VG+ TVLADDPELT RL GL + SP+R++LDP  +    S++++
Sbjct: 188 ANARIHLMRAHSDAIMVGVETVLADDPELTVRLPGLGDRSPVRVVLDPALRTPPQSRLLR 247

Query: 239 TALLAPVIIVTENDDPVLA-LAFRKKNINI----IYCDCR-DLKKLLTILVGRGVTSLLV 292
           T+   P +I+     P  A  A R    ++    +  D R  L+  L  L  RG T +  
Sbjct: 248 TSDRVPTLILCGPAAPPEAERAIRAAGADVARMPVDPDGRLQLRAALHGLGERGFTRVFC 307

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           EGG  +A++     L+D+ ++      +   G+P+
Sbjct: 308 EGGPTLANALARHGLIDTCLIVTGARPLDRAGLPA 342


>gi|228916001|ref|ZP_04079574.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228843596|gb|EEM88672.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 350

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 125/338 (36%), Positives = 184/338 (54%), Gaps = 18/338 (5%)

Query: 23  GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
           G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARG T YVTLEPCSH+
Sbjct: 3   GQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARGGTIYVTLEPCSHH 62

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAY 141
           GR+ PCA+ I++ GI++VVV   DP+  VSGRG+Q L   GI ++  + E E K     +
Sbjct: 63  GRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIQILQDAGIEVLVGVCEEESKKMNEVF 122

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
               + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R ++ AILVG  TV 
Sbjct: 123 NKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTVQ 182

Query: 202 ADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
            D+P LT R+ NG    +P+RIILD   ++ +++ I+        I  T N       A 
Sbjct: 183 KDNPSLTTRIPNG---RNPIRIILDSTLRIPMEANIVTDGEAPTWIFTTSNHAGEKKKAL 239

Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
               + +         +L ++L +L  +GV+SLL+EGG  V  SFI + L+D +ILY + 
Sbjct: 240 ENAGVKVFVTSGEKHINLYEMLDVLGEKGVSSLLIEGGGEVNASFIENELMDKLILYFAP 299

Query: 318 IVIGEGGIPSPLEEGYLEK----------NFMCVRRDY 345
            +IG    PS +E   + K          +F  V +DY
Sbjct: 300 KIIGGRLAPSFVEGTGITKMQDAIEFKDISFTPVGKDY 337


>gi|283834269|ref|ZP_06354010.1| riboflavin biosynthesis protein RibD [Citrobacter youngae ATCC
           29220]
 gi|291069791|gb|EFE07900.1| riboflavin biosynthesis protein RibD [Citrobacter youngae ATCC
           29220]
          Length = 367

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 136/372 (36%), Positives = 194/372 (52%), Gaps = 32/372 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ +      T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DELYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGYHYRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AQGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEVEQLNKGFLKRMRTGFPYLQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP+LT R   L E +           P+RI+LD H +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPQLTVRWPELGESTQASYPQENLRQPIRIVLDSHNQVTPEH 242

Query: 235 KIIKTALLAPVIIVTENDD------PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           +I++        IV   DD       V ++   + N ++      DL  L+  L  + + 
Sbjct: 243 RIVQQP--GETWIVRTQDDTRHWPESVRSIKVPEHNGHL------DLVVLMMQLGKQQIN 294

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRR 343
           S+ VE G  +A + + + LVD +I+Y +  ++G        +P  LE+     +F     
Sbjct: 295 SIWVEAGPTLAGALLQAGLVDELIVYVAPKLLGSDARGLCVLPG-LEKLADAPHFKFNEI 353

Query: 344 DYFGSDVCLEYI 355
              G DVCL  I
Sbjct: 354 RQVGPDVCLHLI 365


>gi|323976105|gb|EGB71198.1| riboflavin biosynthesis protein RibD [Escherichia coli TW10509]
          Length = 367

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 193/371 (52%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVTRVVAAMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TV+ADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVMADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++ +         E+     + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQSGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|284920223|emb|CBG33282.1| riboflavin biosynthesis protein [Escherichia coli 042]
          Length = 367

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 192/371 (51%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++           E+     + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|312963303|ref|ZP_07777786.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens WH6]
 gi|311282383|gb|EFQ60981.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens WH6]
          Length = 378

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 123/345 (35%), Positives = 179/345 (51%), Gaps = 22/345 (6%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            DA +M+ AL  +R  +  T  NP V C+IV+DG ++G G     G PHAEV AL  AG+
Sbjct: 11  LDAHYMARALELARNGLYTTHPNPRVGCVIVRDGQIVGEGWHERTGQPHAEVHALRAAGD 70

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +ARGATAYVTLEPCSHYG +PPCA  ++  G+ RVV  + DP+  V+GRG+Q L+Q GI 
Sbjct: 71  KARGATAYVTLEPCSHYGHTPPCADALVSAGLARVVAAMQDPNPEVAGRGMQRLAQAGIE 130

Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   ++E E +     +L R       + +K+A+S D    MA   S  ITG  ++  V 
Sbjct: 131 VRSGVLEGEARALNRGFLKRMEHGLPFVRVKMAMSLDGRTAMASGESQWITGPAARAAVQ 190

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSLDS 234
            LRA++  +L G  TVLAD   LT R   L              P+R+++D   ++ L++
Sbjct: 191 RLRAEASVVLTGADTVLADGARLTVRAAELGLDAETTALVMSRPPLRVLIDGRLRVPLNA 250

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLL 291
              K      +  VT  +       F +    ++        DL+  L  L  RGV  +L
Sbjct: 251 PFFKAGPALVITCVTAQNQ------FPRGPECLVVPGVEGQVDLRSALVALAARGVNEVL 304

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
           VE G ++A +F    LVD  +++ +   +G      PL +  LEK
Sbjct: 305 VEAGPSLAGAFAQQGLVDEYVIFVAGKFLGCAA--RPLLDWPLEK 347


>gi|16128399|ref|NP_414948.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89107284|ref|AP_001064.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli str. K-12 substr. W3110]
 gi|170080000|ref|YP_001729320.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238899702|ref|YP_002925498.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli BW2952]
 gi|256023969|ref|ZP_05437834.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia sp. 4_1_40B]
 gi|300947935|ref|ZP_07162083.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 116-1]
 gi|300957979|ref|ZP_07170144.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 175-1]
 gi|301025699|ref|ZP_07189215.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 196-1]
 gi|301647336|ref|ZP_07247148.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 146-1]
 gi|331640931|ref|ZP_08342066.1| riboflavin biosynthesis protein RibD [Escherichia coli H736]
 gi|140252|sp|P25539|RIBD_ECOLI RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
           RecName:
           Full=Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase; Includes: RecName:
           Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|581147|emb|CAA45735.1| unnamed protein product [Escherichia coli K-12]
 gi|1773098|gb|AAB40170.1| riboflavin biosynthesis protein RibG [Escherichia coli]
 gi|1786616|gb|AAC73517.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|73853031|emb|CAJ28593.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Escherichia coli]
 gi|85674554|dbj|BAE76194.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli str. K12 substr. W3110]
 gi|169887835|gb|ACB01542.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238861183|gb|ACR63181.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli BW2952]
 gi|260450399|gb|ACX40821.1| riboflavin biosynthesis protein RibD [Escherichia coli DH1]
 gi|299880011|gb|EFI88222.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 196-1]
 gi|300315315|gb|EFJ65099.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 175-1]
 gi|300452535|gb|EFK16155.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 116-1]
 gi|301074481|gb|EFK89287.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 146-1]
 gi|309700676|emb|CBI99972.1| riboflavin biosynthesis protein [Escherichia coli ETEC H10407]
 gi|315135096|dbj|BAJ42255.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
           / 5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli DH1]
 gi|323938599|gb|EGB34848.1| riboflavin biosynthesis protein RibD [Escherichia coli E1520]
 gi|323943220|gb|EGB39376.1| riboflavin biosynthesis protein RibD [Escherichia coli E482]
 gi|331037729|gb|EGI09949.1| riboflavin biosynthesis protein RibD [Escherichia coli H736]
          Length = 367

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 192/371 (51%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V L
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQL 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++   
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++           E+     + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|15672975|ref|NP_267149.1| riboflavin-specific deaminase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723937|gb|AAK05091.1|AE006333_8 riboflavin-specific deaminase [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 362

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 125/362 (34%), Positives = 197/362 (54%), Gaps = 22/362 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  +    G  + NP V  LIVK+G +IG+G     G  HAE+ A ++  E 
Sbjct: 4   DEYYMDLAIVLANKGGGNVNPNPQVGALIVKEGRIIGQGYHEKYGKAHAEINAFKDCNES 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-- 124
             GAT YVTLEPC+H G+ PPC + II+ GI+RVV+   DP+  VSG+G++ + + GI  
Sbjct: 64  PEGATLYVTLEPCAHQGKQPPCFEAIIKNGIKRVVIGHLDPNPLVSGKGIKAMREAGIEV 123

Query: 125 ---IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
              ++++  E   KIF + Y+++ +    ++ +K  ++ D  I  +   S  ITG I++ 
Sbjct: 124 SLNVLEKECEELNKIFFY-YVSQGL---PYVMMKYVMTLDGKIATSAGQSKWITGEIARQ 179

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
           +VH  R++  AI++G+ T++ DDP+L+ RL NG    +P+RII D H +  L SKI+ TA
Sbjct: 180 KVHQDRSRFMAIMIGVETLILDDPQLSVRLENG---KNPIRIICDTHLRSPLASKIVSTA 236

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGA 296
              P II T   DP     F K    II   C +    LK+L   L  +G+ S+++EGG 
Sbjct: 237 TEIPTIIATAESDPEKQAPFLKAGCEIILVSCLEGRLNLKELTKKLGEKGIDSIILEGGG 296

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC-----VRRDYFGSDVC 351
            +  S + + +V  +  Y +  + G    PSP+E   +E+          +  Y G D+ 
Sbjct: 297 TLNASALKAGIVQKVQTYIALKIFGGKEAPSPVEGHGIEQPNQAYLLEGAQITYLGEDIL 356

Query: 352 LE 353
           LE
Sbjct: 357 LE 358


>gi|56460970|ref|YP_156251.1| riboflavin-specific deaminase/reductase [Idiomarina loihiensis
           L2TR]
 gi|56179980|gb|AAV82702.1| Riboflavin-specific deaminase/reductase [Idiomarina loihiensis
           L2TR]
          Length = 375

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 123/331 (37%), Positives = 180/331 (54%), Gaps = 16/331 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           FD + M  AL  +R  +  T  NP+V C+I     V+G G     G PHAEV AL  AG+
Sbjct: 9   FDHQMMHRALMLARRGLMTTRPNPAVGCVITLGTEVVGEGWHHQAGEPHAEVHALRAAGQ 68

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           + RGATAYVTLEPCSH GR+PPC   +IE G++RVVV + DP+ RVSG G+Q L   GI 
Sbjct: 69  KVRGATAYVTLEPCSHIGRTPPCCDALIEAGVKRVVVAMQDPNPRVSGNGIQRLKAAGIS 128

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           VD  +++   +     +++R   +R  +TLK+A S D    ++   S  IT   S++ V 
Sbjct: 129 VDVGVLQLAAESLNPGFISRMTRQRPWVTLKMATSLDAKTALSDGRSQWITSSDSRSDVQ 188

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM--------RIILDPHFKLSLDSKI 236
             RAQ+DAIL G  T+LADDP+LT R++   +  P+        RII+D   +++ ++++
Sbjct: 189 FFRAQADAILSGAATILADDPKLTVRVDQWPKSRPLPEPLKQPVRIIIDSQHRVNDEARV 248

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVE 293
             +   APV +V     P         +  II  D      L  L+  L  R +  L  E
Sbjct: 249 FDSP--APVWLVRTT--PGKPSCHPHCHELIIAADPNGKVSLPALMVELANREINQLWTE 304

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            GA +A + I  +L D +++Y S  ++G  G
Sbjct: 305 CGANLAGALIQQQLCDRLMIYSSGQLLGHHG 335


>gi|323488255|ref|ZP_08093505.1| riboflavin biosynthesis protein RibD [Planococcus donghaensis
           MPA1U2]
 gi|323398113|gb|EGA90909.1| riboflavin biosynthesis protein RibD [Planococcus donghaensis
           MPA1U2]
          Length = 367

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/326 (36%), Positives = 187/326 (57%), Gaps = 8/326 (2%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M+ AL  ++   G T  NP V  +IV D  ++G G     G PHAE+ AL  AG+ ++G
Sbjct: 7   YMNLALTNAQTLKGQTDPNPLVGSVIVNDNRIVGIGTHLKAGEPHAEIHALRMAGDMSQG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           AT YVTLEPCSH+GR+ PCAQ II+ GI +VV+   DP+  V+G G++ L + GI V   
Sbjct: 67  ATIYVTLEPCSHFGRTGPCAQAIIDAGIEKVVIATLDPNPIVAGNGVRMLKEAGIEVIVG 126

Query: 130 MESEGKIFLHAYLTRQ-VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +  E  I ++    +  V K   +TLK A + D  I      S  IT   ++  VHL+R+
Sbjct: 127 VREEEAIKMNEVFNKFIVTKTPFVTLKAASTLDGKIATHSLDSKWITAEEARLDVHLMRS 186

Query: 189 QSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           Q  AILVG+GTV+ DDPELT R+ NG    +P+RI+LD   ++ LDSK++   ++   I 
Sbjct: 187 QHMAILVGVGTVIEDDPELTARISNG---RNPIRIVLDSTLRIPLDSKLVTDGIVDTWIF 243

Query: 248 VTENDDPVLALAFRKKNINIIYC--DCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
            ++N D     A  +  + I     D + D+  ++  L  +G++SL +EGG  +  +F+ 
Sbjct: 244 TSQNYDAEKRQALEELGVLIFETSHDTQVDVIDVVRTLGEKGISSLFIEGGGTINAAFLE 303

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLE 330
           + L+D ++ Y +  ++G    P+ +E
Sbjct: 304 NDLIDKVVFYFAPKLVGGKLAPTFIE 329


>gi|293392571|ref|ZP_06636891.1| riboflavin biosynthesis protein RibD [Serratia odorifera DSM 4582]
 gi|291424973|gb|EFE98182.1| riboflavin biosynthesis protein RibD [Serratia odorifera DSM 4582]
          Length = 370

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 129/336 (38%), Positives = 181/336 (53%), Gaps = 26/336 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     T+ NP+V C+IV+DG ++G G     G PHAEV AL  AG+ 
Sbjct: 4   DELYMARAFELARLGRFTTAPNPNVGCVIVRDGQIVGEGYHLRAGEPHAEVHALRMAGKR 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPCA  +I+ G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 64  ARGATAYVTLEPCSHHGRTPPCADALIDAGVSRVVAAMQDPNPQVAGRGLYKLQQAGIEV 123

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R      ++ LK+  S D    MA   S  IT   ++  V  
Sbjct: 124 RHGLMLAEAEAVNLGFLKRMRTGFPYVQLKLGASLDGCTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRA+S AIL    TVLADDP LT R + L   +           P+RIILD H +++   
Sbjct: 184 LRAESAAILSTSATVLADDPSLTVRWDELDAETQRSYPRENLRQPLRIILDGHNRVTPQH 243

Query: 235 KIIKT------ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           K+I+       A L P   +   +  V  L F      I      DL  ++  L  R V 
Sbjct: 244 KLIQQPGTTWLARLQPDQGLWPQN--VEQLQFPAHGGGI------DLVVMMMQLAKRQVN 295

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           S+ VE GA ++ + + + LVD +ILY +  ++G+ G
Sbjct: 296 SIWVEAGARLSGALLQAGLVDELILYIAPKLLGDNG 331


>gi|229103925|ref|ZP_04234603.1| Riboflavin biosynthesis protein [Bacillus cereus Rock3-28]
 gi|228679493|gb|EEL33692.1| Riboflavin biosynthesis protein [Bacillus cereus Rock3-28]
          Length = 360

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 125/350 (35%), Positives = 187/350 (53%), Gaps = 18/350 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  +    G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARG 
Sbjct: 1   MKLALENANAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARGG 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPCSH+GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  +
Sbjct: 61  TIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKVLQDAGIEVLVGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            E E K     +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R +
Sbjct: 121 CEEESKKMNEVFNKYIMTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNE 180

Query: 190 SDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + AILVG  TV  D+P LT R+ NG    +P+R+ILD   ++ + + ++        I  
Sbjct: 181 NAAILVGANTVQKDNPSLTTRIPNG---RNPIRVILDSTLRIPMKANVVTDEEAPTWIFT 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           T N       A     + +         +L ++L +L  +GV+SLL+EGG  V  SFI +
Sbjct: 238 TSNHAEEKKKALENAGVKVFVTSGEKHINLYEMLDVLGQKGVSSLLIEGGGEVNASFIEN 297

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----------NFMCVRRDY 345
            L+D +ILY +  +IG    PS +E   + K          +F  V +DY
Sbjct: 298 ELMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDAIEFKDISFTQVGKDY 347


>gi|148380824|ref|YP_001255365.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A str.
           ATCC 3502]
 gi|153933315|ref|YP_001385131.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A str.
           ATCC 19397]
 gi|153935215|ref|YP_001388600.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A str.
           Hall]
 gi|148290308|emb|CAL84432.1| riboflavin biosynthesis protein ribd [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           and 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Clostridium botulinum A str. ATCC 3502]
 gi|152929359|gb|ABS34859.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A str.
           ATCC 19397]
 gi|152931129|gb|ABS36628.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A str.
           Hall]
          Length = 365

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 119/361 (32%), Positives = 194/361 (53%), Gaps = 23/361 (6%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL+ +    G  + NP V  ++V +  +IG G   Y G PHAEV AL+EAGE+A+G
Sbjct: 7   YMEKALKLAERGEGKVNPNPKVGAIVVNNNKIIGEGYHKYFGGPHAEVYALKEAGEKAKG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           AT YVTLEPCSHYG++PPCA+ I++ GI + ++ + DP+  V GRG+  L Q GI ++  
Sbjct: 67  ATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVITG 126

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +ME E K     ++    +K+  + LK A + D  I      S  ITG  ++ +VH +R 
Sbjct: 127 IMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATKTGESKWITGEEARYKVHQIRN 186

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
               I+VGIGT++ D+P L  R+   +  SP  II+D   ++ L+SKI++T     + I 
Sbjct: 187 DLSGIMVGIGTIIKDNPLLNTRIE--RGRSPKAIIVDSSLRIPLESKILETLNERTIYIA 244

Query: 249 TENDDPVLALAFRKKNINIIYCDCRD-------LKKLLTILVGRGVTSLLVEGGAAVAHS 301
           T       +     +N+     +  +       L +L+  L   GV S+L+EGG+ +  S
Sbjct: 245 TTKKHNNFSKKNALENLGAKVLEFEENEEGKVPLNELMQYLGSEGVDSILLEGGSTLNFS 304

Query: 302 FINSRLVDSIILY---------RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +   +VD ++ +          S+ +IG  G+ S L++ +   N   ++ +  G D+ +
Sbjct: 305 ALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVES-LKDIF---NLQNLKFEKIGQDILI 360

Query: 353 E 353
           E
Sbjct: 361 E 361


>gi|126462807|ref|YP_001043921.1| riboflavin biosynthesis protein RibD [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104471|gb|ABN77149.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 356

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 131/320 (40%), Positives = 188/320 (58%), Gaps = 7/320 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ ALR     +G T  NP+V C+IVK G V+GRG T  GG PHAE  AL +AG  A GA
Sbjct: 1   MAHALRLGARGLGRTWPNPAVGCVIVKAGRVVGRGWTRPGGRPHAEPVALAQAGAAALGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DRM 129
           TAYVTLEPCSH+GR+PPCA+ +I  G+ RVV    DPD RVSGRG   L + GI V +R+
Sbjct: 61  TAYVTLEPCSHHGRTPPCAEALIAAGLARVVTATGDPDPRVSGRGHAMLREAGIAVTERV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E+E +     +L R  E    +TLK+A + D  I  A   S  ITG +++  VH +R +
Sbjct: 121 LEAEARAAHAGFLKRVTEGLPFVTLKLAATVDGRIATASGESRWITGSLARRAVHAMRMR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DA++VG+GT +ADDP+L+ R  G   H P+RI++D   + + DS++ +TA   PV +  
Sbjct: 181 HDAVMVGVGTAIADDPDLSVRDLG-SGHQPVRIVVDSLLRHAPDSRLGRTARQVPVWLCH 239

Query: 250 ENDDPVLALAFRKKNINIIY-C----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
               P  A A    +  I+  C    D  + + +L  L   G+T +  EGGA +  + + 
Sbjct: 240 GPAAPEAARAAWAASGAILLECPAGPDGLEAEAVLRRLAAEGLTRIFCEGGARLGAALVR 299

Query: 305 SRLVDSIILYRSQIVIGEGG 324
           + L D ++ + +  +IGE G
Sbjct: 300 AGLCDELVTFTAGKLIGEEG 319


>gi|153005591|ref|YP_001379916.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter sp. Fw109-5]
 gi|152029164|gb|ABS26932.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter sp. Fw109-5]
          Length = 401

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 130/325 (40%), Positives = 179/325 (55%), Gaps = 15/325 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM AA+R +   +G TS NP+V  ++VK G V+ RG  A  G PHAEV AL  AG  ARG
Sbjct: 34  FMRAAVREATKGLGRTSPNPAVGAVLVKGGRVVARGHHARAGGPHAEVVALRAAGARARG 93

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG--IIVD 127
           A  Y TLEPC H+GR+PPC+  ++E G+RRV V   DP+  V+GRG+  L + G  ++  
Sbjct: 94  ADLYTTLEPCDHFGRTPPCSVAVLEAGVRRVFVGSADPNPLVNGRGVARLREGGVEVVTG 153

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + E+  ++  H + T   E+R H+TLK AV+ D  I      +  +TG  ++  VH LR
Sbjct: 154 VLRETCDELNAH-WFTFITERRPHVTLKAAVTLDGRIATRTGDARWVTGEPARRWVHRLR 212

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DA+LVG GT  ADDP LT RL G +   P+R++LD    L  D  + +    AP ++
Sbjct: 213 DRVDAVLVGSGTARADDPRLTTRLPGGRGRDPIRVVLDTDLSLPRDLNLFRQRSAAPTLV 272

Query: 248 VTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
              +         R     I    CR      DL+ LL  L  RGVT LLVEGGA V   
Sbjct: 273 AHAS------ARARDLGPRIELLRCRRGPGGVDLRDLLARLAARGVTHLLVEGGARVHAR 326

Query: 302 FINSRLVDSIILYRSQIVIGEGGIP 326
           F+   LVD + ++ +  + G  GIP
Sbjct: 327 FLQEGLVDRVAIFVAPKIAGGDGIP 351


>gi|326941884|gb|AEA17780.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 370

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 117/324 (36%), Positives = 178/324 (54%), Gaps = 4/324 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AG+ 
Sbjct: 3   DQEYMRIALLLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 63  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+    +H P+R++LD H +    S +I   L    
Sbjct: 183 YRHIHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVVLDTHLRTPPSSHVITDGLAPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 242 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327
            +   + I+ Y S  +IG    P+
Sbjct: 302 KTNNFNEIVTYISPKLIGGKDAPT 325


>gi|104779848|ref|YP_606346.1| riboflavin biosynthesis protein RibD [Pseudomonas entomophila L48]
 gi|95108835|emb|CAK13531.1| Riboflavin biosynthesis protein RibD [Pseudomonas entomophila L48]
          Length = 375

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 123/334 (36%), Positives = 181/334 (54%), Gaps = 17/334 (5%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            DA +M+ A+  +R  +  T  NP V C+IV+DG V+G G     G PHAEV AL +AGE
Sbjct: 7   LDAHYMARAVELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQAGE 66

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            ARGA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV  + DP+ +V+G GL+ L + GI 
Sbjct: 67  LARGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGNGLRRLREAGIE 126

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   ++E+E +     +L R       +  K+A+S D    MA   S  ITG  ++  V 
Sbjct: 127 VASGVLEAEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARAAVQ 186

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----------PMRIILDPHFKLSLDS 234
            LRA+S  +L    +VL D+  +T R   L   S          P+R+++D   +L LD+
Sbjct: 187 RLRARSSVVLTSAQSVLQDNARMTVRGEELGLDSALTTLALSRPPLRVLVDGRLRLPLDA 246

Query: 235 KIIKTALLAPVIIVT-ENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292
              +     P ++VT   DDP  A A  +  +N+   D + DL  LL  L  RGV  +L+
Sbjct: 247 PFFQA---GPALVVTAAGDDPRYAAAGHEL-LNLPGDDDQVDLPALLRCLAERGVNEILL 302

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           E GA +  +F    LVD   L+ +   +G    P
Sbjct: 303 EAGAGLVGAFARQGLVDEFQLFVAGTFLGSEARP 336


>gi|254456442|ref|ZP_05069871.1| riboflavin biosynthesis protein RibD [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083444|gb|EDZ60870.1| riboflavin biosynthesis protein RibD [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 353

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 110/311 (35%), Positives = 172/311 (55%), Gaps = 8/311 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  +R + GLT TNPSV C+IVK   +I  G T+Y G PHAEV A++ + E    A
Sbjct: 1   MDLALDLARSNEGLTGTNPSVGCIIVKHDKIISIGQTSYNGRPHAEVNAIKNSIENLNDA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
           T YVTLEPCSH+G +PPC   II+  ++ V+  + D D RV G+  + L  K I V   +
Sbjct: 61  TMYVTLEPCSHHGVTPPCTSSIIKSKLKEVIYSIIDIDQRVKGKTYKILKSKKIKVRTGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           ++ + K F   Y   + +K  +++ KIA+S++N+I      +  IT   S    H LR +
Sbjct: 121 LKKKVKQFYTPYFFNRQKKLPYVSGKIAISKNNLI--FSKKNRKITNIKSDKFTHFLRYK 178

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           +D+IL+   T+  D+P+L CRL GL++ SP RIILD   K + +S + KTA     I   
Sbjct: 179 NDSILISYRTLNKDNPKLNCRLKGLEKFSPKRIILDNKLKTNTNSYLFKTANKENTIFFY 238

Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKK-----LLTILVGRGVTSLLVEGGAAVAHSFIN 304
                   L F+K  I ++  +  + K+     +   L   G  ++LVEGG  +  +F++
Sbjct: 239 NEAIKSKILEFKKNKITVLKLNIDNNKRFNPSIIFKKLYTLGCRNVLVEGGDELTKNFVS 298

Query: 305 SRLVDSIILYR 315
           +++ +   L++
Sbjct: 299 NKIFNQFFLFK 309


>gi|256027507|ref|ZP_05441341.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium
           sp. D11]
 gi|289765470|ref|ZP_06524848.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium sp. D11]
 gi|289717025|gb|EFD81037.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium sp. D11]
          Length = 370

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 200/363 (55%), Gaps = 17/363 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M+ A+  ++   G  + NP V  ++VKDG +IG G     G PHAEV AL EAGE 
Sbjct: 6   DEKYMARAIELAKRGTGSVNPNPLVGAVVVKDGKIIGEGWHKKYGGPHAEVWALNEAGEN 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YVTLEPCSH G++PPCA+ IIE GI++ VV   DP+  V+G+G++ +   GI V
Sbjct: 66  AKGATIYVTLEPCSHQGKTPPCAKRIIEAGIKKCVVACIDPNPLVAGKGIKIIEDAGIEV 125

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E K     +L     K  ++ LK  ++ D  I      S  IT  I++ +V  
Sbjct: 126 KLGILEKEAKDVNKIFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKVQF 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           LR +  AI+VGI TVL D+P L  RL+    G+++ +P R+++DP+ +  +++K +    
Sbjct: 186 LRTKFMAIMVGINTVLKDNPSLDSRLDEKKFGIEKRNPFRVVIDPNLESPIEAKFLNFN- 244

Query: 242 LAPVIIVTENDDPVLALAFRKKNIN--IIYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297
               IIVT ND+  L      KN+    I+ + +   +K +L  L   G+ S+L+EGG+ 
Sbjct: 245 DGKAIIVTSNDNRELEKIKEYKNLGTRFIFLEGKIFKMKDILKELGKLGIDSVLLEGGSG 304

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV------RRDYFGSDVC 351
           +  +     ++D+  ++ +  +IG+     P   G+   N   V      + + +G ++ 
Sbjct: 305 LISTAFKENIIDAGEIFIAPKIIGDNS-AIPFINGFNFDNMEDVFKLPNSKFNIYGDNIS 363

Query: 352 LEY 354
           +E+
Sbjct: 364 IEF 366


>gi|229168856|ref|ZP_04296574.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH621]
 gi|228614586|gb|EEK71693.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH621]
          Length = 379

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 116/324 (35%), Positives = 178/324 (54%), Gaps = 4/324 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE 
Sbjct: 12  DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKDGKIVGMGAHMRAGEEHAEVHALHMAGER 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L + GI +
Sbjct: 72  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPLVSGNGKRRLEEVGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++++E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLDAEATLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TVL D+P LT R+    +H P+R+ILD H +    S +I   L    
Sbjct: 192 YRHIHDAILVGVNTVLTDNPHLTTRIPNGGKH-PIRVILDTHLRTPPSSHVITDGLTPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +     ++   NI +     +  +++ +L++L  + + SL VEGG  V  +F+
Sbjct: 251 IIVGKDVNKEKIASYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFVEGGQTVHANFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327
            +   + I+ Y S  +IG    P+
Sbjct: 311 KTNSFNEIVTYISPKLIGGKDAPT 334


>gi|260588249|ref|ZP_05854162.1| riboflavin biosynthesis protein RibD [Blautia hansenii DSM 20583]
 gi|260541387|gb|EEX21956.1| riboflavin biosynthesis protein RibD [Blautia hansenii DSM 20583]
          Length = 362

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 118/329 (35%), Positives = 181/329 (55%), Gaps = 15/329 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL+ ++   G TS NP V  +IVK+G +IG+G     G  HAE  AL    E  +GA
Sbjct: 1   MKIALQLAKKGCGFTSPNPMVGAVIVKEGRIIGQGWHEKYGEAHAERNALAACTENPKGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           T YVTLEPC HYG+ PPC   I+E GI RVV+   DP+  VSG+G+Q L ++GI+V   +
Sbjct: 61  TMYVTLEPCCHYGKQPPCINAIMEAGIERVVIGSGDPNPLVSGKGIQILKKQGILVTEHI 120

Query: 131 ESE-----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
             E      ++F H   T    KR  + +K A++ D  I      S  +TG  ++  V  
Sbjct: 121 LQEDCERLNEVFFHYIQT----KRPFVVMKYAMTMDGKISTKTGASKWVTGETARRHVAQ 176

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R +  AI+ GIGT+L DDP+LTCR+ G +  +P+RII D   ++ L + ++ TA   P 
Sbjct: 177 QRHRYAAIMAGIGTILTDDPQLTCRIEGGK--NPIRIICDTTLRIPLSANVVSTAKQIPT 234

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           II T   D      + KK  +++  + R    DL++L+ +L  + + S+L+EGG  +  +
Sbjct: 235 IIATCCRDAERCALYEKKGCHVLLVEERNGHVDLEQLMYLLGEKQIDSILLEGGGTLNWA 294

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLE 330
            ++S +V  +  Y +  + G     +P+E
Sbjct: 295 ALSSGIVQKVQAYIAPKLFGGQAAKTPIE 323


>gi|300924134|ref|ZP_07140126.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 182-1]
 gi|301330725|ref|ZP_07223327.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 78-1]
 gi|300419587|gb|EFK02898.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 182-1]
 gi|300843386|gb|EFK71146.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 78-1]
          Length = 367

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 192/371 (51%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GA AYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGAIAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V L
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQL 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L E +           P+RI++D   ++  + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVMPEH 242

Query: 235 KIIK----TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++    T         +E  + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWFARTQEDSSEWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|324328017|gb|ADY23277.1| riboflavin biosynthesis protein RibD [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 370

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 117/324 (36%), Positives = 178/324 (54%), Gaps = 4/324 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE+
Sbjct: 3   DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +I+  ++RVV+   D +  VSG G + L + GI +
Sbjct: 63  AKGATVYVTLEPCSHFGKTPPCCESLIKKEVKRVVIATLDCNPLVSGNGKRRLEEAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+    +H P+R+ILD H +    S +I   L    
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVILDTHLRTPPSSHVITDGLAPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           I V ++ +     ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF+
Sbjct: 242 IFVGKDVNKEKIASYESENIVIFQMKTKQIEIQDILDLLGEKQILSLFVEGGQTVHASFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327
            +   + I+ Y S  +IG    P+
Sbjct: 302 QTNNFNEIVTYISPKLIGGKDAPT 325


>gi|148826406|ref|YP_001291159.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae PittEE]
 gi|229846003|ref|ZP_04466115.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae 7P49H1]
 gi|148716566|gb|ABQ98776.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae PittEE]
 gi|229811007|gb|EEP46724.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae 7P49H1]
 gi|309973554|gb|ADO96755.1| Riboflavin biosynthesis protein RibD [Haemophilus influenzae R2846]
          Length = 372

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 122/333 (36%), Positives = 184/333 (55%), Gaps = 16/333 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           SS D  FM  AL  +      T+ NPSV C++VK+G ++G G     G PHAE  AL +A
Sbjct: 5   SSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ++GATAYVTLEPCSHYGR+PPCA  +IE G+ +V+  + DP+ +V+G+GL+ LS  G
Sbjct: 65  GENSKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAG 124

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I     ++  + +     +L R  +    + LK+A+S D    MA   S  ITG  +++ 
Sbjct: 125 IESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDARSD 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231
           V  +RA+S A+L    TV+ADDP L  R +   E+            P+R+ILD   ++ 
Sbjct: 185 VQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHRIQ 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
              K+  T   +PV +V+     +    F      II      LK+L+  L  R + +L 
Sbjct: 245 PTHKLFLTH--SPVWLVSSETRDL--TGFPDFCEQIILPKENLLKELMRELGKRQINTLW 300

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           VE GA +A S I+++LVD +I+Y +  ++G+  
Sbjct: 301 VEAGANLAGSLIDAKLVDELIIYIAPKLLGDNA 333


>gi|226950300|ref|YP_002805391.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A2 str.
           Kyoto]
 gi|226842626|gb|ACO85292.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A2 str.
           Kyoto]
          Length = 365

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 121/361 (33%), Positives = 195/361 (54%), Gaps = 23/361 (6%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL+ +    G  + NP V  ++VK+  +IG G   Y G  HAEV AL EAGE+A+G
Sbjct: 7   YMEKALKLAERGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGSHAEVYALREAGEKAKG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           AT YVTLEPCSHYG++PPCA+ I++ GI + ++ + DP+  V GRG+  L Q GI +V  
Sbjct: 67  ATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVTG 126

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +ME E K     ++    +K+  + LK A + D  I      S  ITG  ++ +V  +R 
Sbjct: 127 IMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATRTGESKWITGEDARYKVQQIRN 186

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
               I+VGIGT++ D+P LT R+ G +  SP  II+D + ++ L+SKI++T     + I 
Sbjct: 187 DLSGIMVGIGTIIKDNPLLTTRIEGGR--SPRAIIVDSNLRIPLESKILETLNKRAIYIA 244

Query: 249 TENDDPVLALAFRKKNINIIYCDCRD-------LKKLLTILVGRGVTSLLVEGGAAVAHS 301
           T       +     +N+     +  +       L +L+  L   GV S+L+EGG+ +  S
Sbjct: 245 TTKKHNNFSKKNALENLGAKVLEFEENEEGKVPLNELMQYLGSEGVDSILLEGGSTLNFS 304

Query: 302 FINSRLVDSIILY---------RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +   +VD ++ +          S+ +IG  G+ S L++ +   N   ++ +  G D+ +
Sbjct: 305 ALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVES-LKDIF---NLQNLKFEKIGQDILI 360

Query: 353 E 353
           E
Sbjct: 361 E 361


>gi|228941263|ref|ZP_04103816.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974195|ref|ZP_04134765.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228980786|ref|ZP_04141091.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis Bt407]
 gi|228778955|gb|EEM27217.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis Bt407]
 gi|228785535|gb|EEM33544.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818422|gb|EEM64494.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 379

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 117/324 (36%), Positives = 178/324 (54%), Gaps = 4/324 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AG+ 
Sbjct: 12  DQEYMRIALLLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 72  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+    +H P+R++LD H +    S +I   L    
Sbjct: 192 YRHIHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVVLDTHLRTPPSSHVITDGLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 251 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327
            +   + I+ Y S  +IG    P+
Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPT 334


>gi|89055912|ref|YP_511363.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Jannaschia sp. CCS1]
 gi|88865461|gb|ABD56338.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Jannaschia sp. CCS1]
          Length = 365

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 130/328 (39%), Positives = 182/328 (55%), Gaps = 8/328 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DAR+M+ AL      +G    NP+V C++V++G V+GRG TA GG PHAEV AL +AG  
Sbjct: 3   DARWMALALSLGARGMGQVWPNPAVGCVLVREGRVVGRGWTARGGRPHAEVVALGQAGAL 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGA AYV+LEPC+H G++ PCA  +I+ G+ RVVV  +DPD RV+G G+  L   G+ V
Sbjct: 63  ARGACAYVSLEPCNHVGQTGPCASALIDAGVARVVVACEDPDPRVAGGGIARLRAAGVEV 122

Query: 127 DRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              + +      H    R+V E R  +TLK+A S D  I  A   S  ITG  ++ +VH 
Sbjct: 123 VVGVGAAEAERAHTGFFRRVREGRPMLTLKVATSLDGRIATASGESQWITGPDARRRVHG 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +RA+ DA+LVG GT  ADDP LT R  G     P+R+++     + +D  + +TA   PV
Sbjct: 183 MRARHDAVLVGAGTARADDPSLTVRGFG-DVPQPVRVVVSRRLDVPVDLALGRTARDVPV 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDC------RDLKKLLTILVGRGVTSLLVEGGAAVA 299
            +V   D P  A A        +           D+   L  L   G+T +  EGG A+A
Sbjct: 242 WLVHGPDVPSAARAAWVAAGATLIESALGAGGQLDVGAALQRLGEAGLTRVFCEGGGALA 301

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS 327
            S + + LVD + ++   +VIG  G PS
Sbjct: 302 ASLLTADLVDELAVFSGGLVIGAEGTPS 329


>gi|167464708|ref|ZP_02329797.1| riboflavin specific deaminase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 341

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 117/320 (36%), Positives = 182/320 (56%), Gaps = 6/320 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  ++   G T  NP V C++VKDG +IG G   + G  HAEV AL+ AG E
Sbjct: 6   DEMYMRLALDMAKGAKGQTGVNPVVGCVLVKDGRIIGMGAHLHRGQGHAEVHALQMAGAE 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A G+TAYVTLEPCSH+G++PPC+  +I+ G++RVV+   DP+ +V+G G++ L   GI V
Sbjct: 66  AEGSTAYVTLEPCSHFGKTPPCSGRLIDHGVKRVVIAAVDPNPQVAGAGIERLRSAGIEV 125

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  ++  E      A+    V     +T+K A + D  I      S  ITG +S+  VH 
Sbjct: 126 DVGLLAEEASAMNEAFNKYIVTGMPFVTMKTASTLDGKIAAKTGDSKWITGDLSRAYVHT 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +R Q   ILV + TV+ADDP+L+ RL  +    P+RI+ D   +L L++++++     P 
Sbjct: 186 MRHQHQGILVSVDTVIADDPQLSTRLT-VPALQPVRIVADSRLRLPLEAQVLQDLDRQPT 244

Query: 246 IIV-TENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           I++ TE   P    A  + + +++ C      DL+  +  L  R + S+L+EGG  +  +
Sbjct: 245 IVLTTELSSPERRRALEELSASVLTCGSGPQVDLRLAMKQLGEREIGSILLEGGGRLNGA 304

Query: 302 FINSRLVDSIILYRSQIVIG 321
            +   LVD I+L+ +  +IG
Sbjct: 305 MLEQGLVDKIMLFVAPKIIG 324


>gi|190572771|ref|YP_001970616.1| putative deaminase [Stenotrophomonas maltophilia K279a]
 gi|190010693|emb|CAQ44302.1| putative deaminase [Stenotrophomonas maltophilia K279a]
          Length = 361

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 123/326 (37%), Positives = 179/326 (54%), Gaps = 7/326 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M+ ALR +      T  NP V C+I     V+G+G     G PHAEV AL EA
Sbjct: 6   SVLDHLHMANALRLAERAAYTTRPNPMVGCVIAHGERVVGQGWHQRAGGPHAEVFALREA 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G EARGATAYVTLEPC+HYGR+PPCA  +IE G+ RVV  + DP  +V G G   L   G
Sbjct: 66  GSEARGATAYVTLEPCAHYGRTPPCALALIEAGVSRVVAAMRDPFPKVDGGGFDLLRNAG 125

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I + + +M ++ +     +L+R    R  + +K+A S D    MA   S  ITG  ++  
Sbjct: 126 IEVAEGLMAAQARELNKGFLSRVERNRPWLRVKLAASLDGRTAMADGSSKWITGPAARED 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           V   RA++ AIL G  TVLADDP LT RL   +   P+R++LD   + SL+   ++    
Sbjct: 186 VQHWRARAGAILTGADTVLADDPMLTVRLADTEVMPPLRVVLDSRLR-SLECGRVREG-G 243

Query: 243 APVIIVTENDDPVLAL-AFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAH 300
           AP + +  +D  V A  A   +  ++   + R DL  +L +L  RG+  +  E GA +A 
Sbjct: 244 APTLYM--HDAAVSAPDAADAEFASVPSAEGRLDLGAVLALLAERGINEVHTEAGATLAG 301

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIP 326
           + +    +D ++LY++  ++G+ G P
Sbjct: 302 ALLRGGWMDELLLYQAPTLLGDNGRP 327


>gi|262038723|ref|ZP_06012083.1| riboflavin biosynthesis protein RibD [Leptotrichia goodfellowii
           F0264]
 gi|261747275|gb|EEY34754.1| riboflavin biosynthesis protein RibD [Leptotrichia goodfellowii
           F0264]
          Length = 382

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 114/328 (34%), Positives = 183/328 (55%), Gaps = 12/328 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S  DA +M  AL  ++  +G  + NP V  +IVK+G +IG G     G  HAEV A+E 
Sbjct: 14  ISKEDAEYMKMALELAKKGIGRVNPNPLVGAVIVKNGKIIGEGYHKMFGEAHAEVHAIEN 73

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGEE + AT YVTLEPCSHYG++PPCA+ II+ GI+R V+   DP+  V+G+G++ L   
Sbjct: 74  AGEETKNATIYVTLEPCSHYGKTPPCAEKIIKAGIKRCVIGSGDPNPEVAGKGIEMLKNS 133

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI + + +++ E       +      K  ++ LK  ++ D  I ++   S  IT   ++ 
Sbjct: 134 GIEVTENVLKKECDELNQVFFKYIKSKIPYLFLKCGITLDGKIALSNGESKWITNEKARE 193

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
           +V   R +   I+VGI TVL D+P LT R+ NG+    P RII+DP+ +++ D  IIK  
Sbjct: 194 KVQYYRNKFMGIMVGINTVLYDNPSLTARIENGVD---PFRIIIDPNLRITEDYNIIKNN 250

Query: 241 LLAPVIIVT----ENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEG 294
                +IVT    +N D V     RKK +  I+   ++  ++ +L  +   G+ S+L+EG
Sbjct: 251 SDGKTVIVTSVINKNSDKVEIFKERKK-LKFIFLKGKNFLMRDILEEIGKEGIDSVLLEG 309

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGE 322
           G  +     + +++D   ++ S  + G+
Sbjct: 310 GEKLISKAFSEKVIDGGEIFISNKIFGD 337


>gi|145298017|ref|YP_001140858.1| pyrimidine deaminase/reductase RibD [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850789|gb|ABO89110.1| pyrimidine deaminase/reductase RibD [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 369

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 122/337 (36%), Positives = 183/337 (54%), Gaps = 23/337 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D ++M+ AL  +R     T+ NP V  ++VK G+V+G G     G PHAE+ AL EA
Sbjct: 3   SQDDYQWMNRALELARRGRYTTAPNPCVGAVLVKAGVVVGEGWHKRAGEPHAEIYALHEA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G+EARGATAYVTLEPCSH+GR+PPCA+ +I+ G+ RVV  + DP+  V GRGL+ LS+ G
Sbjct: 63  GDEARGATAYVTLEPCSHHGRTPPCAEALIKAGVTRVVAAMVDPNPEVGGRGLRMLSEAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  D  ++ SE +     +  R       +T+K+  S D    MA   S  ITG +++  
Sbjct: 123 IKTDFGLLSSEAEALNPGFFKRMRTAFPLVTVKLGASLDGRTAMASGESQWITGPLARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLS 231
           V  LRA  DA+L    TVLAD   LT R + L               P+R+I+D   +L+
Sbjct: 183 VQRLRAGHDAVLSSAETVLADGASLTVRWDELPPSLKATYAKETLRQPLRVIVDSRNRLT 242

Query: 232 LDSKIIKTALLAPVIIVTEN---DDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGV 287
            D  + ++    PV++       D P        + + +   D + DL  L  +L  R +
Sbjct: 243 PDLPLFQST--GPVLLARHKAAGDWPEWV-----QQLELPLLDGKLDLVSLFMLLAKRNI 295

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            S+LVE G  +  + ++  LVD ++LY++  ++G+ G
Sbjct: 296 NSVLVEAGPRLCGALLDKGLVDELVLYQAPKLMGDEG 332


>gi|218703696|ref|YP_002411215.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli UMN026]
 gi|293403533|ref|ZP_06647624.1| ribD [Escherichia coli FVEC1412]
 gi|298379145|ref|ZP_06989026.1| ribD [Escherichia coli FVEC1302]
 gi|300900480|ref|ZP_07118647.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 198-1]
 gi|218430793|emb|CAR11667.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli UMN026]
 gi|291429386|gb|EFF02406.1| ribD [Escherichia coli FVEC1412]
 gi|298280258|gb|EFI21762.1| ribD [Escherichia coli FVEC1302]
 gi|300355961|gb|EFJ71831.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 198-1]
          Length = 367

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 195/372 (52%), Gaps = 30/372 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++           E+     + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEE--GYLEKNFMCVRRD 344
            VE G  +A + + + LVD +I+Y +  ++G       I   LE+    L+  F  +R  
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCILPGLEKLADALQFKFKEIR-- 354

Query: 345 YFGSDVCLEYIG 356
           + G DVCL  +G
Sbjct: 355 HVGPDVCLHLVG 366


>gi|261822528|ref|YP_003260634.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Pectobacterium wasabiae WPP163]
 gi|261606541|gb|ACX89027.1| riboflavin biosynthesis protein RibD [Pectobacterium wasabiae
           WPP163]
          Length = 369

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 123/332 (37%), Positives = 180/332 (54%), Gaps = 22/332 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DA +M+ AL  +R     T+ NP+V C+IV+DG ++G G     G PHAEV AL  AGE 
Sbjct: 4   DAFYMARALELARRGRFTTAPNPNVGCVIVRDGEIVGEGYHFRAGEPHAEVHALRMAGER 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPCA  +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 64  ARGATAYVTLEPCSHHGRTPPCADALIAAGVSRVVAAMQDPNPQVAGRGLHRLQQSGITV 123

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 124 SHGVMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
            RA+S AIL    TVLADDP LT R   L               P+R+I+D   +++   
Sbjct: 184 FRAESAAILSSSATVLADDPSLTVRWLELDADVQKRYSEADLRQPVRVIVDSQQRVTPQH 243

Query: 235 KIIKTALLAPVIIVTENDDP----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +++       +  V  ++      V  +   + N  +      DL  L+ +L  R + S+
Sbjct: 244 RVVSQPGETWLARVQADEQAWPQGVEQVMLPQHNGGV------DLVALMMVLGRRQINSV 297

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
            VE GA++A + +N+ +VD +I+Y +  ++GE
Sbjct: 298 WVEAGASLAGALLNAGVVDELIVYLAPKLLGE 329


>gi|294784869|ref|ZP_06750157.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_27]
 gi|294486583|gb|EFG33945.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_27]
          Length = 369

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 124/368 (33%), Positives = 204/368 (55%), Gaps = 19/368 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M+ A+  ++   G  + NP V  +IVKDG +IG G     G PHAEV AL EAGE 
Sbjct: 6   DEKYMARAIELAKRGTGGVNPNPLVGAVIVKDGKIIGEGWHKKFGGPHAEVWALNEAGEN 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YVTLEPCSH G++PPCA+ IIE GI+R VV   DP+  V+G+G++ +   GI V
Sbjct: 66  AKGATVYVTLEPCSHQGKTPPCAKRIIEAGIKRCVVACIDPNPLVAGKGMKIIENAGIEV 125

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  ++E E K     +L     K  ++ LK  ++ D  I      S  IT  I++ +V  
Sbjct: 126 ELGVLEKEAKDVNKIFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKVQF 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           LR +  AI+VGI TVL D+P L  RL+    G+++ +P R+++DP+ +  +++K +    
Sbjct: 186 LRTKFMAIMVGINTVLKDNPSLDSRLDEEKSGIEKRNPFRVVIDPNLESPIEAKFLNFN- 244

Query: 242 LAPVIIVTENDDPVLALAFRKKNIN--IIYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297
               II+T ND+  L    + KN+    I+ + +   ++ +L  L    + S+L+EGG+ 
Sbjct: 245 DGKAIIITSNDNKGLEKIEKYKNLGTRFIFLEGKIFKMEDILKELGKLEIDSVLLEGGSG 304

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV------RRDYFGSDVC 351
           +  +     ++D+  ++ +  +IG+     P   G+   N   V      + + +G ++ 
Sbjct: 305 LISTAFKENIIDAGEIFIAPKIIGDNS-AIPFINGFNFDNMEEVFKLPNPKFNIYGDNIS 363

Query: 352 LEYIGKNL 359
           +E+  KNL
Sbjct: 364 IEF--KNL 369


>gi|227113442|ref|ZP_03827098.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 378

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 123/332 (37%), Positives = 180/332 (54%), Gaps = 22/332 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL  +R     T+ NP+V C+IV+DG ++G G     G PHAEV AL  AGE 
Sbjct: 13  DELYMARALELARRGCFTTAPNPNVGCVIVRDGEIVGEGYHFRAGEPHAEVHALRMAGER 72

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPCA  +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 73  ARGATAYVTLEPCSHHGRTPPCADALITAGVSRVVAAMQDPNPQVAGRGLHRLQQAGIAV 132

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 133 SHGLMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQR 192

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
            RA+S AIL    TVLADDP LT R + L               P+R+I+D   +++   
Sbjct: 193 FRAESAAILSSSATVLADDPSLTVRWSELGADIQKRYSEADLRQPVRVIVDSQQRVTPQH 252

Query: 235 KIIKTALLAPVIIVTENDDP----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I+       +  V  ++      V  +   + N  +      DL  L+ +L  R + S+
Sbjct: 253 RIVSQPGETWLARVQADEQAWPQGVEQVMLPQHNGGV------DLVALMMVLGRRQINSV 306

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
            VE GA++A + +N+ +VD +I+Y +  ++GE
Sbjct: 307 WVEAGASLAGALLNAGVVDELIVYLAPKLLGE 338


>gi|262066887|ref|ZP_06026499.1| riboflavin biosynthesis protein RibD [Fusobacterium periodonticum
           ATCC 33693]
 gi|291379396|gb|EFE86914.1| riboflavin biosynthesis protein RibD [Fusobacterium periodonticum
           ATCC 33693]
          Length = 369

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 124/368 (33%), Positives = 201/368 (54%), Gaps = 14/368 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
            + D +FM+ A+  +   +G  + NP V  ++VKDG +IG G     G PHAEV AL EA
Sbjct: 3   KTVDEKFMARAIELAFKGLGGVNPNPLVGAVVVKDGKIIGEGWHKKYGGPHAEVWALNEA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GEEA+GAT YVTLEPCSH G++PPCA+ I+E GI+R V+   DP+  V+G+G++ +   G
Sbjct: 63  GEEAKGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVIACIDPNPLVAGKGIKIIEDAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I VD  ++E E K     +L     K  ++ LK  ++ D  I      S  IT   ++ +
Sbjct: 123 IKVDFGILEKEAKEVNKVFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEAAREK 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIK 238
           V  LR +  AI+VGI TVL D+P L  RLN    G+++ +P R+++DP+ +  ++SK + 
Sbjct: 183 VQFLRTKFTAIMVGINTVLKDNPSLDSRLNEEKYGIEKRNPFRVVVDPNLESPIESKFLH 242

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNIN--IIYCDCR--DLKKLLTILVGRGVTSLLVEG 294
                  IIVT +D+  L      +NI   +IY + +   ++ +L  L    + S+L+EG
Sbjct: 243 FD-DKKAIIVTSSDNRNLEKVKEYENIGTRLIYLEGKVFKMEDILKELGKLNIDSVLLEG 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           G+ +  +      +D+  ++ +  +IG+     P   G+   NF  +   +  S+     
Sbjct: 302 GSGLISTAFKENAIDAGEIFIAPKIIGDNS-SIPFISGF---NFDSMEDVFKLSNPKFNI 357

Query: 355 IGKNLCLQ 362
            G N+ ++
Sbjct: 358 YGDNISIE 365


>gi|205374673|ref|ZP_03227467.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           [Bacillus coahuilensis m4-4]
          Length = 377

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 120/325 (36%), Positives = 178/325 (54%), Gaps = 4/325 (1%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M+ A++ ++   G TS NP V  +IV+DG ++G G     G PHAE+ AL  AG++A+G
Sbjct: 10  YMNMAIQNAKVMSGQTSPNPLVGAVIVRDGEIVGFGAHMKAGEPHAEIHALRMAGDKAKG 69

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           AT YVTLEPCSHYGR+ PCA  +IE GI  VVV   DP+  V+G G++ L   GI ++  
Sbjct: 70  ATIYVTLEPCSHYGRTGPCAVALIEAGITNVVVATLDPNPIVAGNGVRILEDAGIKVITG 129

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +ME+E K     +    V  R  ITLK A S D  I      S  IT   ++  VH +R 
Sbjct: 130 VMEAEAKRMNEVFNHFIVTGRPFITLKTASSLDGKIATHTHNSKWITCEGAREDVHKMRN 189

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
             DAILVG  T+L D+P LT RL      +P+RII+D   K+ L+SK++        I  
Sbjct: 190 VYDAILVGANTILEDNPSLTTRLENTHGKNPIRIIIDSALKIPLNSKVLTDKEAPTWIFT 249

Query: 249 TENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           ++  +     +  +   ++I        +L  ++  L    V+SL++EGG  +  SF+  
Sbjct: 250 SKMVEETRVQSVERLGASVIKTSGTHQVNLHDVVNYLGKMNVSSLIIEGGGTINSSFVEE 309

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLE 330
           +LV   ++Y +  +IG    P+ LE
Sbjct: 310 KLVQKAVIYFAPKLIGGKEAPTFLE 334


>gi|318604604|emb|CBY26102.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 369

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 122/327 (37%), Positives = 177/327 (54%), Gaps = 14/327 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     TS NP+V C++V+DG ++G G     G PHAEV AL  AGE+
Sbjct: 4   DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPCA  ++  G++RVV  + DP+ +V+GRGL  L Q G+ V
Sbjct: 64  ARGATAYVTLEPCSHHGRTPPCADALLTAGVKRVVAAMQDPNPQVAGRGLYKLKQAGVEV 123

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP LT R   L   +           P+RII+D H +++   
Sbjct: 184 FRAQSSAILSTSATVLADDPALTVRWQELDAQTQALYPQDALRQPVRIIVDSHNRVTPQH 243

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           K+I+     P  +     D        ++ +   + +  DL  L+  L  R + S+ VE 
Sbjct: 244 KVIQQD--GPCWLARVETDEQSWPNNVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321
           G   A + + + +VD +ILY +  ++G
Sbjct: 302 GPQFAGALLQAGVVDELILYIAPKLLG 328


>gi|256846007|ref|ZP_05551465.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_36A2]
 gi|256719566|gb|EEU33121.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_36A2]
          Length = 369

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 124/368 (33%), Positives = 206/368 (55%), Gaps = 17/368 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D ++M+ A+  ++  +G  + NP V  +IVKDG +IG G     G PHAEV AL EAGE
Sbjct: 5   LDEKYMARAIELAKRGIGGVNPNPLVGAVIVKDGKIIGEGWHKKFGGPHAEVWALNEAGE 64

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            A GAT YVTLEPCSH G++PPCA+ I+E GI+R VV   DP+  V+G+G++ +   GI 
Sbjct: 65  NAEGATIYVTLEPCSHQGKTPPCAKRIVEVGIKRCVVACIDPNPLVAGKGIKIMEDAGIE 124

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V+  ++E E K     +L     K  ++ LK  ++ D  I      S  IT  I++ +V 
Sbjct: 125 VELGVLEKEAKDVNKIFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKVQ 184

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            LR +  AI+VGI TVL D+P L  RL+    G+++ +P R+++DP+ +  +++K +   
Sbjct: 185 FLRTKFMAIMVGINTVLKDNPSLDSRLDEEKSGIEKRNPFRVVIDPNLESPIEAKFLNFN 244

Query: 241 LLAPVIIVTENDDPVLALAFRKKNIN--IIYCDCR--DLKKLLTILVGRGVTSLLVEGGA 296
                II+T ND+  L    + KN+    I+ + +   ++ +L  L    + S+L+EGG+
Sbjct: 245 -DGKAIIITSNDNKGLEKIEKYKNLGTRFIFLEGKIFKMEDILKELGKLEIDSVLLEGGS 303

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG-GIP--SPLEEGYLEKNFMCVRRDY--FGSDVC 351
            +  +     ++D+  ++ +  +IG+   IP  +    G +E+ F      +  +G ++ 
Sbjct: 304 GLISTAFKENIIDAGEIFIAPKIIGDNSAIPFINGFNFGNMEEVFKLPNPKFNIYGDNIS 363

Query: 352 LEYIGKNL 359
           +E+  KNL
Sbjct: 364 IEF--KNL 369


>gi|256020381|ref|ZP_05434246.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Shigella sp. D9]
 gi|332281560|ref|ZP_08393973.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Shigella sp. D9]
 gi|332103912|gb|EGJ07258.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Shigella sp. D9]
          Length = 367

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GA AYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGAIAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V L
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQL 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
            I++           E+     + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 HIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|213969282|ref|ZP_03397420.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|213925960|gb|EEB59517.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
          Length = 366

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 127/338 (37%), Positives = 182/338 (53%), Gaps = 33/338 (9%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL  +R  +  T  NP V C+IV+DG ++G+G  A  G PHAEV AL EAGE ARGA
Sbjct: 1   MAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALREAGELARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129
           TAYVTLEPCSH GR+PPCA  +I  G+ RVV  + DP+ +V+G GL  L   GI V   +
Sbjct: 61  TAYVTLEPCSHQGRTPPCADALISAGLARVVAAMQDPNPQVAGSGLLRLMTAGISVQCGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +ESE +     ++ R    R ++ +K+A+S D    MA   S  ITG  +++ V  LRAQ
Sbjct: 121 LESEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARSAVQRLRAQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHS----------PMRIILDPHFKLSLDSKIIKT 239
           S  +L G  TVLAD   LT R + L  ++          P+R+++D   ++ LD+   + 
Sbjct: 181 SSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVPLDTPFFQA 240

Query: 240 ALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
                 ++VT           E+   +LALA    ++        DL++L+  L  RGV 
Sbjct: 241 ---GSALVVTCAAASARGRYQEDGHEMLALADSAGHV--------DLRRLMGELGARGVN 289

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            +LVE G  +A +F    LVD   L+ +   +G    P
Sbjct: 290 EVLVEAGPRLAGAFTRLGLVDEFQLFIAGKFLGSSARP 327


>gi|187734040|ref|YP_001879123.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Shigella boydii CDC 3083-94]
 gi|187431032|gb|ACD10306.1| riboflavin biosynthesis protein RibD [Shigella boydii CDC 3083-94]
          Length = 367

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
            I++           E+     + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 HIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|312898694|ref|ZP_07758084.1| riboflavin biosynthesis protein RibD [Megasphaera micronuciformis
           F0359]
 gi|310620613|gb|EFQ04183.1| riboflavin biosynthesis protein RibD [Megasphaera micronuciformis
           F0359]
          Length = 371

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 115/319 (36%), Positives = 173/319 (54%), Gaps = 9/319 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  +R  +G TS NP+V C+IVKDG ++GRG     G PHAEV AL EA E+A+GA
Sbjct: 1   MEEALNLARMGLGYTSPNPTVGCVIVKDGEIVGRGYHHQAGTPHAEVWALREAKEKAKGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPC+HYG++PPCA+ +++ G+ +VV  + DP+  V+G+G   L   GI ++  +
Sbjct: 61  TVYVTLEPCAHYGKTPPCARALVKAGVAKVVCAMLDPNPLVAGKGAAILRNAGIPVIVGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M  E       ++   +  +  I +K+A S D         S  IT   ++ + H LR+ 
Sbjct: 121 MSKEAVKMNEVFIKNMIVHKPFIAVKLAQSLDGCTASRTGKSKWITNDTARQEGHYLRSL 180

Query: 190 SDAILVGIGTVLADDPELTCRLN---GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
            DAILVGI TV +D+P LT R       +   P RIILD   ++ L + ++       +I
Sbjct: 181 YDAILVGINTVESDNPLLTSRTTRPGHERPKQPTRIILDSTGRIDLQALLVTDKQSPTII 240

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           + TE        A     + +I          DL  L+  L  +G+ S+L+EGG+ V  S
Sbjct: 241 VTTERCPESKRQALNTAGVEVIVAAADDEGRIDLNGLMDTLYKKGICSILIEGGSTVIGS 300

Query: 302 FINSRLVDSIILYRSQIVI 320
           F +  LVD + ++   I++
Sbjct: 301 FFDENLVDKLYVFTGHIIM 319


>gi|332160725|ref|YP_004297302.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325664955|gb|ADZ41599.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 369

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 122/327 (37%), Positives = 177/327 (54%), Gaps = 14/327 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     TS NP+V C++V+DG ++G G     G PHAEV AL  AGE+
Sbjct: 4   DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPCA  ++  G++RVV  + DP+ +V+GRGL  L Q G+ V
Sbjct: 64  ARGATAYVTLEPCSHHGRTPPCADALLTAGVKRVVAAMQDPNPQVAGRGLYKLKQAGVEV 123

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP LT R   L   +           P+RII+D H +++   
Sbjct: 184 FRAQSSAILSTSATVLADDPALTVRWQELDAQTQALYPQDALRQPVRIIVDSHNRVTPQH 243

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           K+I+     P  +     D        ++ +   + +  DL  L+  L  R + S+ VE 
Sbjct: 244 KVIQQD--GPCWLARVETDEQSWPNNVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321
           G   A + + + +VD +ILY +  ++G
Sbjct: 302 GPQFAGALLQAGVVDELILYIAPKLLG 328


>gi|157159935|ref|YP_001457253.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli HS]
 gi|157065615|gb|ABV04870.1| riboflavin biosynthesis protein RibD [Escherichia coli HS]
          Length = 367

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 129/367 (35%), Positives = 188/367 (51%), Gaps = 20/367 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 QRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           +I++             +D        +  +   +    DL  L+  L  + + S+ VE 
Sbjct: 243 RIVQQP--GETWFARTQEDSSEWPETVRTLLTPEHKGHLDLVVLMMQLGKQQINSIWVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349
           G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      + G D
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|323965096|gb|EGB60555.1| riboflavin biosynthesis protein RibD [Escherichia coli M863]
 gi|327254735|gb|EGE66351.1| riboflavin biosynthesis protein RibD [Escherichia coli STEC_7v]
          Length = 367

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 193/371 (52%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVTRVVAAMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TV+ADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVMADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDNQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++ +         E+     + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQSGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADVPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|332187003|ref|ZP_08388744.1| riboflavin biosynthesis protein RibD [Sphingomonas sp. S17]
 gi|332013013|gb|EGI55077.1| riboflavin biosynthesis protein RibD [Sphingomonas sp. S17]
          Length = 313

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 123/315 (39%), Positives = 165/315 (52%), Gaps = 42/315 (13%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M AAL  +   +G T+ NP+V C++V+DG VIGRG T  GG PHAE  AL EAGE A GA
Sbjct: 1   MGAALALAGRGIGRTAPNPNVGCILVRDGRVIGRGWTQPGGRPHAEAMALAEAGESACGA 60

Query: 71  TAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           TAYVTLEPC+H   R P C   +I  G+  +V  + DPD R +G+G       GI V   
Sbjct: 61  TAYVTLEPCAHVSTRGPACTDLLIAAGVAHIVAAMGDPDPRTNGQGFDRARAAGIAVTTG 120

Query: 130 M-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + ESE +  +  +LTR+ ++R  +TLK+A S D  I      S  ITG  ++   HL R+
Sbjct: 121 ICESEARAMIAGFLTRRAKERPFVTLKLATSLDGRIARPDGTSRWITGPQARAHTHLERS 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + +AILVG GT+ AD P L  RL GL+  SP RI+L                        
Sbjct: 181 RHEAILVGRGTLQADSPRLDVRLPGLETRSPRRILL------------------------ 216

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           +   +P          I  +                 GV  L+VEGGA  A +F+ + LV
Sbjct: 217 SRTSEPGWETISSPHAITHLA----------------GVDRLMVEGGAQTASAFLAADLV 260

Query: 309 DSIILYRSQIVIGEG 323
           D ++LYR+ I+IGEG
Sbjct: 261 DRLLLYRAPILIGEG 275


>gi|238765182|ref|ZP_04626114.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
           kristensenii ATCC 33638]
 gi|238696616|gb|EEP89401.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
           kristensenii ATCC 33638]
          Length = 369

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 121/327 (37%), Positives = 178/327 (54%), Gaps = 14/327 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     TS NP+V C++V+DG ++G G     G PHAEV AL  AGE+
Sbjct: 4   DEFYMARAFELARLGRFTTSPNPNVGCVVVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPCA  ++  G++RVV  + DP+ +V+GRGL  L Q G+ V
Sbjct: 64  ARGATAYVTLEPCSHHGRTPPCADALLTAGVKRVVAAMQDPNPQVAGRGLYKLKQAGVEV 123

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP LT R   L   +           P+R+I+D H +++ + 
Sbjct: 184 FRAQSSAILSTSATVLADDPSLTVRWQELDADTQARYPQDTLRQPVRVIVDSHNRVTPEH 243

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           K+I+     P  +     D        ++ +   + +  DL  L+  L  R + S+ VE 
Sbjct: 244 KVIQQD--GPCWLARVEADEQSWPNNVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321
           G   A + + + +VD +ILY +  ++G
Sbjct: 302 GPQFAGALLQAGVVDELILYIAPKLLG 328


>gi|123443368|ref|YP_001007342.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122090329|emb|CAL13195.1| riboflavin biosynthesis protein RibD [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 369

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 122/327 (37%), Positives = 177/327 (54%), Gaps = 14/327 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     TS NP+V C++V+DG ++G G     G PHAEV AL  AGE+
Sbjct: 4   DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPCA  ++  G++RVV  + DP+ +V+GRGL  L Q G+ V
Sbjct: 64  ARGATAYVTLEPCSHHGRTPPCADALLTAGVKRVVAAMQDPNPQVAGRGLYKLKQAGVEV 123

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP LT R   L   +           P+RII+D H +++   
Sbjct: 184 FRAQSSAILSTSATVLADDPALTVRWQELDAQTQALYPQDALRQPVRIIVDSHNRVTPQH 243

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           K+I+     P  +     D        ++ +   + +  DL  L+  L  R + S+ VE 
Sbjct: 244 KVIQQD--GPCWLARVEADEQSWPNNVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321
           G   A + + + +VD +ILY +  ++G
Sbjct: 302 GPQFAGALLQAGVVDELILYIAPKLLG 328


>gi|253699856|ref|YP_003021045.1| riboflavin biosynthesis protein RibD [Geobacter sp. M21]
 gi|251774706|gb|ACT17287.1| riboflavin biosynthesis protein RibD [Geobacter sp. M21]
          Length = 369

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 126/328 (38%), Positives = 192/328 (58%), Gaps = 7/328 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S    + M  AL  +R  VG T+ NP+V C+IV+DG V+G G     G PHAEV AL+ 
Sbjct: 1   MSDLHLKMMRLALCEARKGVGKTAPNPAVGCVIVRDGEVVGTGWHKKAGTPHAEVHALKA 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE+A GA AYVTLEPCSH+G++PPCA+ +IE  + RV V + DP+  VSG+G+Q L   
Sbjct: 61  AGEKAAGADAYVTLEPCSHFGKTPPCAKALIEAKVARVFVAMVDPNPLVSGKGIQMLKDA 120

Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V+  +  E    L+    + ++ R   + LK A++ D     A   S  +T   ++ 
Sbjct: 121 GIAVEVGLLEEESRELNLPFIKWIQTRLPFVVLKSALTLDGKSATASGDSKWVTSDRARR 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +VH LR + DAI+VG+GTV  DDP LTCR+ G ++  P+R+I+D   ++ L + ++    
Sbjct: 181 EVHRLRGRLDAIMVGVGTVAKDDPLLTCRVPGGKD--PLRVIVDSTLRIPLHAAVLGVPS 238

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC---DCR-DLKKLLTILVGRGVTSLLVEGGAA 297
            A  II T + D     A +   + I+ C   D R DL  L   L  RGV S+L+EGG+ 
Sbjct: 239 KAQTIIATCSGDEAKMQALKAHGVEILTCCESDGRVDLADLFVKLGARGVQSVLLEGGSH 298

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGI 325
           +A + + + L+D  +++ +  ++G  G+
Sbjct: 299 LAGAALRAGLIDKCMIFLAPKLVGGAGM 326


>gi|262404604|ref|ZP_06081159.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio sp. RC586]
 gi|262349636|gb|EEY98774.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio sp. RC586]
          Length = 367

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 121/339 (35%), Positives = 184/339 (54%), Gaps = 27/339 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +AGE  RGATAYVTLEPCSHYGR+PPCA+ +++ G+ +V+  + DP+ +V+GRG+Q L
Sbjct: 61  MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLVKAGVAKVICAMQDPNPQVAGRGVQML 120

Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI V+  ++E++ +     +L R      ++ LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R + L +             P+R+ILD  
Sbjct: 181 ARKDVQCFRAQASAILSTSQTVLADNASLAVRWHDLPKSVQAQYAETDLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGR- 285
            +L             P + + +   PVL +A    ++ I   + + DL++LL  L  + 
Sbjct: 241 HQLH------------PELALYQTPSPVLRVASENADLCISTENGKLDLRELLAQLAQQH 288

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            V  + VE G+ +A S I  +LVD IILY +  ++G  G
Sbjct: 289 NVNQVWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDG 327


>gi|56965745|ref|YP_177479.1| riboflavin biosynthesis protein RibD [Bacillus clausii KSM-K16]
 gi|56911991|dbj|BAD66518.1| riboflavin biosynthesis protein RibD [Bacillus clausii KSM-K16]
          Length = 367

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 121/336 (36%), Positives = 188/336 (55%), Gaps = 12/336 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           R+M  AL  ++   G T  NP V C++VK+G +IG G     G  HAE+ AL  AG EA+
Sbjct: 4   RYMRLALDNAKAMKGQTDPNPLVGCVLVKEGRIIGVGAHLKAGEAHAEINALRMAGSEAK 63

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           G+TAYVTLEPCSH GR+ PCA  ++E G++ V++   DP+  VSG G++ L + G+ V  
Sbjct: 64  GSTAYVTLEPCSHTGRTGPCAVELVEAGVKEVIIATLDPNPLVSGNGVRILEEGGVHVQT 123

Query: 129 -MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++E E       +    V +  ++TLK AVS D  I      S  IT   ++  VH LR
Sbjct: 124 GILEKEAVQLNDVFNYSIVNRMPYVTLKAAVSLDGKIAAKSGDSKWITSSEARQDVHRLR 183

Query: 188 AQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           +++ AI+VG+ TVL D+P LT R+ NG    +P+R+I+D H +  +D+ I+ T  LAP  
Sbjct: 184 SENQAIIVGVDTVLKDNPSLTARIANG---RNPIRVIVDSHLRTPVDA-IVTTDGLAPTW 239

Query: 247 IVTENDD---PVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAH 300
           I T  +    P       K  + ++        DLK+++  L    ++S L+E G  +  
Sbjct: 240 IFTAAEPRHLPEKQERLEKAGVRLVQTSGTTKVDLKEMMAYLYKESISSALLEAGGTLNA 299

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
           +F+ ++LV  +I+Y +  +IG    P+ LE   ++K
Sbjct: 300 AFLEAQLVQKLIVYVAPKLIGGALAPTFLEGSGIDK 335


>gi|330969741|gb|EGH69807.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 378

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 129/345 (37%), Positives = 183/345 (53%), Gaps = 33/345 (9%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D  +M+ AL  +R  +  T  NP V C+IV++G ++G G  A  G PHAEV AL +A
Sbjct: 6   AALDVHYMARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQA 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPCSH GR+PPCA  +IE G+ RVV  + DP+  VSGRGL  L   G
Sbjct: 66  GELARGATAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNAG 125

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++ESE +     +L R      ++ +K+A+S D    MA   S  ITG  +++ 
Sbjct: 126 IGVQCGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSA 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSL 232
           V  LRAQS  +L G  TVLAD   LT R + L             +P+R+++D   ++ L
Sbjct: 186 VQRLRAQSSVVLSGADTVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLRVPL 245

Query: 233 DSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
           D+   +       ++VT           E    +LALA    ++        DL++L+  
Sbjct: 246 DAPFFQA---GSALVVTCAAASARGRYQEEGHEMLALADSAGHV--------DLRRLMGE 294

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           L  RGV  +LVE G  +A +F    LVD   L+ +   +G    P
Sbjct: 295 LAARGVNEVLVEAGPRLAGAFARLGLVDEFQLFIAGKFLGSSARP 339


>gi|262166346|ref|ZP_06034083.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio mimicus VM223]
 gi|262026062|gb|EEY44730.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio mimicus VM223]
          Length = 367

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 124/339 (36%), Positives = 186/339 (54%), Gaps = 27/339 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +AGE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+GRG+Q L
Sbjct: 61  MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGRGVQML 120

Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI V   ++E++ +     +L R      ++ LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVQIGLLEADARALNSGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R + L +             P+R+ILD  
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPQSVQTQYAETDLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVI-IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR- 285
            +L  +  + +T   +PV+ + +EN D    L    +N  +      DL++LL  L  + 
Sbjct: 241 HQLHPELSLYQTP--SPVLRVASENAD----LCISAENGKL------DLRELLAQLAQQH 288

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            V  + VE G+ +A S I  +LVD IILY +  ++G  G
Sbjct: 289 NVNQVWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDG 327


>gi|222055764|ref|YP_002538126.1| riboflavin biosynthesis protein RibD [Geobacter sp. FRC-32]
 gi|221565053|gb|ACM21025.1| riboflavin biosynthesis protein RibD [Geobacter sp. FRC-32]
          Length = 368

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 121/371 (32%), Positives = 197/371 (53%), Gaps = 15/371 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++ F    M  A+  +R  VG T+ NP+V C+IVKDG ++G G     G PHAE+ AL +
Sbjct: 1   MTDFAENMMKRAVSLARKGVGKTAPNPAVGCVIVKDGAIVGEGWHRKAGTPHAEIHALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  A GA  +VTLEPCSH+G++PPCA  +I   + RV V + DP+ RV G+G+  L   
Sbjct: 61  AGALAEGADVFVTLEPCSHFGKTPPCADALIAAKVARVYVGMVDPNPRVCGKGISKLRAA 120

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V+  ++E + +     ++         + LK A++ D  I  AG  S  +T   S+ 
Sbjct: 121 GIQVEAPLLEEKCRALNEPFIKHVTTGLPFVILKTAMTMDGKIATAGMDSKWVTSEKSRR 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH LR++ D I+VG+GT++ DDP LT R+ G    +P+R+++D   ++  D+ ++    
Sbjct: 181 YVHKLRSELDVIMVGVGTIIKDDPLLTSRIPG--GRNPLRVVVDSKLRIPPDAHVLHCDS 238

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAA 297
            A  ++ T + D             ++ C    D  DL  L+  L  RGV S+L+EGGA 
Sbjct: 239 TAKTVVATISSDEAQVSRLAGLGAEVLSCGEDGDRVDLCCLMAKLGKRGVQSVLLEGGAE 298

Query: 298 VAHSFINSRLVDS-IILYRSQIVIGEG-----GIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           +A   +   ++D  +  Y  ++V G+G     G  +      L+  ++ V +   G D+ 
Sbjct: 299 LAGEALRKGIIDKCMFFYAPKLVAGDGLGPFAGNGAGKMADALKLQWVTVTK--IGVDIL 356

Query: 352 LEYIGKNLCLQ 362
           ++   + +CLQ
Sbjct: 357 VQGYPEKICLQ 367


>gi|297538271|ref|YP_003674040.1| riboflavin biosynthesis protein RibD [Methylotenera sp. 301]
 gi|297257618|gb|ADI29463.1| riboflavin biosynthesis protein RibD [Methylotenera sp. 301]
          Length = 370

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 116/322 (36%), Positives = 175/322 (54%), Gaps = 8/322 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ ALR +   +  T  NP V C+IVK+  ++G+G     G PHAEV AL EAG  
Sbjct: 6   DHTYMTLALRLAERGLYTTQPNPRVGCVIVKNNQIVGQGAHLKAGEPHAEVFALREAGAN 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GA AYVTLEPC+H+GR+PPC   +I   ++RVVV + DP+  V+G G++ L   GI V
Sbjct: 66  AEGADAYVTLEPCNHHGRTPPCVDALINARVKRVVVAMQDPNPLVAGNGIKRLQAHGIEV 125

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  +ME+E K     +++R      ++  K+A S D    +    S+ ITG  ++  V  
Sbjct: 126 EVGLMEAESKSLNLGFISRMTSALPYVRCKVAASLDGRTALNNGKSLWITGEPARLDVQH 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL--LA 243
            RAQS AI+ GIGTVL D+P +  RL       P+R+I+D + +   D K++   L  L+
Sbjct: 186 WRAQSCAIVTGIGTVLTDNPSMNVRLENTGRQ-PLRVIVDSNLQTPTDCKMLNPELLSLS 244

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299
           PV++    D    A A       +++        +L  LL  L  R V  +L+E G  + 
Sbjct: 245 PVLVAYAQDAHHKASALTATGAQLLHLPDESGRVNLHALLKNLASRDVNEVLLEAGQGLN 304

Query: 300 HSFINSRLVDSIILYRSQIVIG 321
            +F+ + LVD  I Y +  ++G
Sbjct: 305 GAFLQAGLVDEFIFYYAPKLMG 326


>gi|258620986|ref|ZP_05716020.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
           mimicus VM573]
 gi|258586374|gb|EEW11089.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
           mimicus VM573]
          Length = 367

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 183/339 (53%), Gaps = 27/339 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +AGE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+GRG+Q L
Sbjct: 61  MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGRGVQML 120

Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI V   ++E++ +     +L R      ++ LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVQIGLLEADARALNSGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R + L +             P+R+ILD  
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPQSVQTQYAETDLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGR- 285
            +L             P + + +   PVL +A    ++ I   + + DL++LL  L  + 
Sbjct: 241 HQLH------------PELALYQTPSPVLRVASENADLCISAENGKLDLRELLAQLAQQH 288

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            V  + VE G+ +A S I  +LVD IILY +  ++G  G
Sbjct: 289 NVNQVWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDG 327


>gi|325928452|ref|ZP_08189643.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas
           perforans 91-118]
 gi|325541169|gb|EGD12720.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas
           perforans 91-118]
          Length = 369

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 118/333 (35%), Positives = 182/333 (54%), Gaps = 18/333 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S+ D R+M+ ALR +      T  NP V C+IV+DG+ +G G     G PHAEV AL  
Sbjct: 8   ASADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRA 67

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPC+HYGR+PPCA  +I+ G+ RVV  + DP  +V+G G   L + 
Sbjct: 68  AGELARGATAYVTLEPCAHYGRTPPCALALIDAGVARVVAAMADPFPQVNGGGFALLREA 127

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI ++  +M ++ +     +L+R    R  + +K+  S D    +A   S  ITG  ++ 
Sbjct: 128 GIEVLSGVMHAQARTLNQGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITGSRARA 187

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTA 240
                RA++ AIL G GTV+ADDP +T RL   +    P+R++LD   + +L  + I+  
Sbjct: 188 DGQRWRARAGAILTGAGTVMADDPSMTVRLGEDMPVVPPLRVVLDAGLR-TLACRNIRQG 246

Query: 241 LLAPVIIVTEN-------DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
               + +  EN       D   LA+  +            DL  +L +L  RG+  + VE
Sbjct: 247 SAPTLYLHGENVAAPSLDDAQFLAVPLQAGRF--------DLPAVLALLAERGINEVHVE 298

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            GA ++ + + + LVD +++Y + +++G+   P
Sbjct: 299 AGAMLSGALLQAGLVDELLVYMAPVLLGDTARP 331


>gi|310644100|ref|YP_003948858.1| riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (riboflavin-specific deaminase) and
           5-amino-6-(5-phosphoribosylamino)uracil reductase)
           [Paenibacillus polymyxa SC2]
 gi|309249050|gb|ADO58617.1| Riboflavin biosynthesis protein
           (Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (Riboflavin-specific deaminase) and
           5-amino-6-(5-phosphoribosylamino)uracil reductase)
           [Paenibacillus polymyxa SC2]
          Length = 366

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 123/324 (37%), Positives = 176/324 (54%), Gaps = 8/324 (2%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           ++M  AL  +R   G T  NP V  +IV +G ++G G     G PHAE+ AL  AGE A+
Sbjct: 6   KYMRLALENARSAKGQTEPNPLVGSVIVNNGRIVGIGAHLKPGEPHAEIHALRMAGEHAQ 65

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GAT YVTLEPCSH+GR+ PCA+ I++ GIRRVV+   DP+  VSGRG+Q L   GI ++ 
Sbjct: 66  GATIYVTLEPCSHHGRTGPCAEAIVKAGIRRVVIAALDPNPLVSGRGVQILKDAGIEVIV 125

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + E E       +    V KR  IT+K AV+ D  I      S  IT   ++  VH LR
Sbjct: 126 GVCEQESIRMNEVFNQYIVNKRPFITIKSAVTLDGKIATRTSESKWITSEAAREDVHRLR 185

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            +   ILVG+ TV+ D+P+LT RL   +  +P+RIILD   ++ LD+++I        I 
Sbjct: 186 HEHVGILVGVQTVIHDNPQLTTRLP--EGRNPIRIILDSKLRIPLDARVITDGEAPTWIF 243

Query: 248 VTENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
                D        +  + +      Y +  +L ++L IL    V+S+ VEGGA V  SF
Sbjct: 244 TGRTYDKGKRSQLEQLGVKVYPTQDEYSERVNLPQMLDILGAAEVSSVFVEGGAEVNASF 303

Query: 303 INSRLVDSIILYRSQIVIGEGGIP 326
           +   L D ++LY +  ++G    P
Sbjct: 304 VQQGLADKLVLYIAPKLVGGRSAP 327


>gi|330976721|gb|EGH76762.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 378

 Score =  199 bits (505), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 129/345 (37%), Positives = 183/345 (53%), Gaps = 33/345 (9%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D  +M+ AL  +R  +  T  NP V C+IV++G ++G G  A  G PHAEV AL +A
Sbjct: 6   AALDVHYMARALEMARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQA 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPCSH GR+PPCA  +IE G+ RVV  + DP+  VSGRGL  L   G
Sbjct: 66  GELARGATAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNAG 125

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++ESE +     +L R      ++ +K+A+S D    MA   S  ITG  +++ 
Sbjct: 126 IGVQCGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSA 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSL 232
           V  LRAQS  +L G  TVLAD   LT R + L             +P+R+++D   ++ L
Sbjct: 186 VQRLRAQSSVVLSGADTVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLRVPL 245

Query: 233 DSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
           D+   +       ++VT           E    +LALA    ++        DL++L+  
Sbjct: 246 DAPFFQA---GSALVVTCAAASARGRYQEEGHEMLALADSAGHV--------DLRRLMGE 294

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           L  RGV  +LVE G  +A +F    LVD   L+ +   +G    P
Sbjct: 295 LAARGVNEVLVEAGPRLAGAFARLGLVDEFQLFIAGKFLGSSARP 339


>gi|225848913|ref|YP_002729077.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644745|gb|ACN99795.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 366

 Score =  199 bits (505), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 117/327 (35%), Positives = 179/327 (54%), Gaps = 11/327 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
           +M+ AL  ++   G T  NP+V  +IVKDG +IG+G     G PHAE +A+++A   G +
Sbjct: 7   YMNIALDLAKERKGYTHPNPTVGAVIVKDGKIIGKGFHYKAGMPHAEREAIKDAKSKGFD 66

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            RG+T +V+LEPC HYG++PPC + I+E GI +VVV   DP+  V+G+G++ L QKG+ +
Sbjct: 67  LRGSTIFVSLEPCCHYGKTPPCTEAILEEGISKVVVATLDPNPLVAGKGVEILKQKGVEV 126

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++E + +     +     +KR  + +K+A + D  I      S  IT   S+   H+
Sbjct: 127 VLGVLEKQAQKINEDFFIYITQKRPFVHIKVAQTIDGKIATKTGSSKWITSQESRKYAHI 186

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAP 244
           LR Q+ A+LVG  T   D+P LT R   +Q E  P+R++LD   K+ L+  I        
Sbjct: 187 LRNQATAVLVGSNTAQLDNPSLTVRY--IQTERQPIRVLLDSKLKVPLNYNIYSKEADTI 244

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
           VI   E D     +  ++ N+ +   D  +    +K +L IL    +  LLVEGG  V  
Sbjct: 245 VITSKEADPYKKEILSKQSNVKLYTLDTYNGKFKIKDILEILYQNQIVHLLVEGGKEVIT 304

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS 327
           SFI     D I L+ +  ++GE GI S
Sbjct: 305 SFIKEDFWDKISLFTAPKIVGEDGISS 331


>gi|193068693|ref|ZP_03049654.1| riboflavin biosynthesis protein RibD [Escherichia coli E110019]
 gi|209917627|ref|YP_002291711.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli SE11]
 gi|218552977|ref|YP_002385890.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli IAI1]
 gi|260853634|ref|YP_003227525.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli O26:H11 str. 11368]
 gi|260866572|ref|YP_003232974.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli O111:H- str. 11128]
 gi|293418481|ref|ZP_06660916.1| riboflavin biosynthesis protein RibD [Escherichia coli B088]
 gi|300820347|ref|ZP_07100499.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 119-7]
 gi|300903321|ref|ZP_07121249.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 84-1]
 gi|301301562|ref|ZP_07207697.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 124-1]
 gi|331666763|ref|ZP_08367637.1| riboflavin biosynthesis protein RibD [Escherichia coli TA271]
 gi|192958056|gb|EDV88498.1| riboflavin biosynthesis protein RibD [Escherichia coli E110019]
 gi|209910886|dbj|BAG75960.1| pyrimidine deaminase/reductase [Escherichia coli SE11]
 gi|218359745|emb|CAQ97286.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli IAI1]
 gi|257752283|dbj|BAI23785.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli O26:H11 str. 11368]
 gi|257762928|dbj|BAI34423.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli O111:H- str. 11128]
 gi|291325009|gb|EFE64424.1| riboflavin biosynthesis protein RibD [Escherichia coli B088]
 gi|300404616|gb|EFJ88154.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 84-1]
 gi|300527132|gb|EFK48201.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 119-7]
 gi|300843059|gb|EFK70819.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 124-1]
 gi|315256239|gb|EFU36207.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 85-1]
 gi|323152118|gb|EFZ38411.1| riboflavin biosynthesis protein RibD [Escherichia coli EPECa14]
 gi|323184760|gb|EFZ70131.1| riboflavin biosynthesis protein RibD [Escherichia coli 1357]
 gi|323945315|gb|EGB41371.1| riboflavin biosynthesis protein RibD [Escherichia coli H120]
 gi|324016680|gb|EGB85899.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 117-3]
 gi|331065987|gb|EGI37871.1| riboflavin biosynthesis protein RibD [Escherichia coli TA271]
          Length = 367

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 192/371 (51%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 QRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEH 242

Query: 235 KIIK----TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++    T         +E  + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWFARTQEDSSEWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|331681807|ref|ZP_08382440.1| riboflavin biosynthesis protein RibD [Escherichia coli H299]
 gi|331081009|gb|EGI52174.1| riboflavin biosynthesis protein RibD [Escherichia coli H299]
          Length = 367

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 192/371 (51%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARLDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++           E+     + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTMPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|253687420|ref|YP_003016610.1| riboflavin biosynthesis protein RibD [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753998|gb|ACT12074.1| riboflavin biosynthesis protein RibD [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 378

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 122/332 (36%), Positives = 179/332 (53%), Gaps = 22/332 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL  +R     T+ NP+V C+IV+DG ++G G     G PHAEV AL  AGE 
Sbjct: 13  DELYMARALELARRGRFTTAPNPNVGCVIVRDGDIVGEGYHFRAGEPHAEVHALRMAGER 72

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 73  ARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPQVAGRGLHRLQQAGIAV 132

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
               M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 133 SHGFMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQR 192

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
            RA+S AIL    TVLADDP LT R + L               P+R+I+D   +++   
Sbjct: 193 FRAESAAILSSSATVLADDPSLTVRWSELGADVQTRYSEADLRQPVRVIVDSQRRVTPQH 252

Query: 235 KIIKTALLAPVIIVTENDDP----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I+       +  V  ++      V  +   + N  +      DL  L+ +L  R + S+
Sbjct: 253 RIVSQPGETWLARVQADEQAWPQGVEQVTLPQHNGGV------DLVALMMVLGRRQINSV 306

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
            VE GA++A + +N+ +VD +I+Y +  ++GE
Sbjct: 307 WVEAGASLAGALLNAGVVDELIVYLAPKLLGE 338


>gi|191166718|ref|ZP_03028545.1| riboflavin biosynthesis protein RibD [Escherichia coli B7A]
 gi|309794861|ref|ZP_07689282.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 145-7]
 gi|190903229|gb|EDV62951.1| riboflavin biosynthesis protein RibD [Escherichia coli B7A]
 gi|308121514|gb|EFO58776.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 145-7]
 gi|320201655|gb|EFW76231.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-5-phosphoribosylaminouracil
           reductase [Escherichia coli EC4100B]
          Length = 367

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 192/371 (51%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 QRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEH 242

Query: 235 KIIK----TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++    T         +E  + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWFARTQEDSSEWPETVRTLLIPEHKGHL------DLVILMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|145630038|ref|ZP_01785820.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae R3021]
 gi|144984319|gb|EDJ91742.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae R3021]
          Length = 372

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 120/333 (36%), Positives = 183/333 (54%), Gaps = 16/333 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           SS D  FM  AL  +      T+ NPSV C++VK+G ++G G     G PHAE  AL +A
Sbjct: 5   SSQDHVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERIALAQA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+G TAYVTLEPCSHYGR+PPCA  +IE G+ +V+  + DP+ +V+G+GL+ LS  G
Sbjct: 65  GENAKGTTAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAG 124

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I     ++  + +     +L R  +    + LK+A+S D    M    S  ITG  +++ 
Sbjct: 125 IESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMESGESKWITGSDARSD 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231
           V  +RA+S A+L    T++ADDP L  R +   E+            P+R+ILD   ++ 
Sbjct: 185 VQKMRAKSSALLSTSATIIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHRIQ 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
              K+  T   +PV +V+   +P     F      II      LK+++  L  R + +L 
Sbjct: 245 PTHKLFLTH--SPVWLVS--SEPRDLTGFPDFCEQIILPKENLLKEVMRELGKRQINTLW 300

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           VE GA +A S I+++LVD +I+Y +  ++G+  
Sbjct: 301 VEAGANLAGSLIDAKLVDELIIYIAPKLLGDNA 333


>gi|283784233|ref|YP_003364098.1| riboflavin biosynthesis protein [Citrobacter rodentium ICC168]
 gi|282947687|emb|CBG87242.1| riboflavin biosynthesis protein [Citrobacter rodentium ICC168]
          Length = 367

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 135/367 (36%), Positives = 192/367 (52%), Gaps = 22/367 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ +      T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DELYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGYHYRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGMARVVAAMQDPNPQVAGRGLYRLQQAGIEV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP+LT R + L E             P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSETVLADDPQLTVRWSELGEATQAAYPQENLRQPVRIVIDSRNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVE 293
           +I+           T+ DD V   + R   I +   +      LL +L+G+  + SL VE
Sbjct: 243 RIVSQPGET-WFARTKEDDRVWPESVR--TIQVPEHNGHLDLVLLLMLLGKQQINSLWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGS 348
            G  +A + + + +VD +I+Y +  ++G        +P  LE+      F      Y G 
Sbjct: 300 AGPTLAGALLQAGVVDELIMYVAPKLLGSDARGLCVLPG-LEKLADAPQFQFKEIRYTGP 358

Query: 349 DVCLEYI 355
           DVCL  I
Sbjct: 359 DVCLHLI 365


>gi|323191332|gb|EFZ76595.1| riboflavin biosynthesis protein RibD [Escherichia coli RN587/1]
          Length = 367

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    M    S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMTSGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++           E+     + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|229013322|ref|ZP_04170462.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides DSM 2048]
 gi|228747915|gb|EEL97780.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides DSM 2048]
          Length = 379

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 117/324 (36%), Positives = 176/324 (54%), Gaps = 4/324 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE 
Sbjct: 12  DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKDGKIVGMGAHMRAGEEHAEVHALHMAGER 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L + GI V
Sbjct: 72  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPLVSGNGKRILEEAGIKV 131

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++ +E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLGAEATLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TVL D+P LT R+    +H P+R+ILD H +    S +I   L    
Sbjct: 192 YRHIHDAILVGVNTVLTDNPHLTTRIPNGGKH-PIRVILDTHLRTPPSSHVITDGLTPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++   NI +     +  +++ +L++L  + + SL VEGG  V  +F+
Sbjct: 251 IIVGKDVSKEKIASYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFVEGGQTVHANFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327
            +   + I+ Y S  +IG    P+
Sbjct: 311 KTNSFNEIVTYISPKLIGGKDAPT 334


>gi|261856455|ref|YP_003263738.1| riboflavin biosynthesis protein RibD [Halothiobacillus neapolitanus
           c2]
 gi|261836924|gb|ACX96691.1| riboflavin biosynthesis protein RibD [Halothiobacillus neapolitanus
           c2]
          Length = 386

 Score =  199 bits (505), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 122/335 (36%), Positives = 182/335 (54%), Gaps = 14/335 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D R+M  AL  +   +  T  NP V C+IV  G V+GRG  A  G PHAEV AL+EA
Sbjct: 11  SPDDTRWMREALALAERGLTTTQPNPRVGCVIVNAGEVVGRGFHALAGGPHAEVFALQEA 70

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATAYVTLEPC+H GR+P CA  + + G+RRVV  + DPD RV+G G   L   G
Sbjct: 71  GERAKGATAYVTLEPCAHVGRTPACAPQLADAGVRRVVTAMTDPDPRVAGEGHAILRTAG 130

Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + V+  ++E+E +     +L+R    R  +T+KIA S D    +A   S  ITG  +++ 
Sbjct: 131 VQVESGLLEAEARWLNRGFLSRIERGRPWVTVKIAQSLDGRTALANGESRWITGEAARHD 190

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL------QEHSPMRIILDPHFKLSLDSKI 236
           V  LRA+  A+L G+ TVL DD  L  RL+            P+R++LD   +L   + I
Sbjct: 191 VQFLRARHAAVLTGVDTVLTDDARLNVRLSPEALAIDGAVRQPLRVVLDSGLRLPPFAPI 250

Query: 237 IKTALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291
               +   V I T + D  +       + + ++         DL  +L  L  +G++ +L
Sbjct: 251 FD--VQGEVRIYTRDVDAGIHHDGLTARGVQLVAAPQAEFGLDLGFILRDLALQGISEVL 308

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           VE G  +A +F++   VD +I+Y++ +++G    P
Sbjct: 309 VESGPKLAGAFVDQGWVDELIIYQAPVLLGHKAQP 343


>gi|196037929|ref|ZP_03105239.1| riboflavin biosynthesis protein RibD [Bacillus cereus NVH0597-99]
 gi|196031199|gb|EDX69796.1| riboflavin biosynthesis protein RibD [Bacillus cereus NVH0597-99]
          Length = 367

 Score =  199 bits (505), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 122/351 (34%), Positives = 189/351 (53%), Gaps = 18/351 (5%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL  ++   G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARG
Sbjct: 7   YMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
            T YVTLEPCSH+GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  
Sbjct: 67  GTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVG 126

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + E + K     +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R 
Sbjct: 127 VCEEKSKKMNEVFNKYIMTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHKIRN 186

Query: 189 QSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           ++ AILVG  TV  D+P LT R+ NG    +P+R+ILD   ++ +++ ++        I 
Sbjct: 187 ENAAILVGANTVQKDNPSLTTRIPNG---RNPIRVILDSTLRIPMEANVVTDGEAPTWIF 243

Query: 248 VTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
            T N             + +         +L ++L +L  +G++SLL+EGG  V  SFI 
Sbjct: 244 TTSNHAAEKRKVLESAGVKVFVTSGEKHINLYEMLDVLGRKGISSLLIEGGGEVNASFIE 303

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----------NFMCVRRDY 345
           + L+D +ILY +  +IG    PS +E   + K          +F  V +DY
Sbjct: 304 NELMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDAIEFKDISFTPVGKDY 354


>gi|304395476|ref|ZP_07377359.1| riboflavin biosynthesis protein RibD [Pantoea sp. aB]
 gi|304356770|gb|EFM21134.1| riboflavin biosynthesis protein RibD [Pantoea sp. aB]
          Length = 366

 Score =  199 bits (505), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 126/337 (37%), Positives = 180/337 (53%), Gaps = 26/337 (7%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL  +R     T  NP+V C+IV+DG V G G     G PHAEV AL  AGE
Sbjct: 1   MDELYMARALELARRGRFTTMPNPNVGCVIVRDGEVAGEGWHQRAGEPHAEVHALRMAGE 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +ARGATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 61  KARGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLHRLHQSGIA 120

Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   +M  E +     +L R       I LK+  S D    MA   S  IT   ++  V 
Sbjct: 121 VSHGLMMPEAEALNRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSAAARRDVQ 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R + L   S           P+R+I+D   +++  
Sbjct: 181 RLRAQSAAILSSSATVLADDPSLTVRWSELDPESQSLLDEQQLRQPVRVIVDSQNRVTPQ 240

Query: 234 SKII----KTALL--APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
            ++I    +T L+   P       +   +A+  R++ +        DL  ++ +L  + +
Sbjct: 241 HRLISQPGETWLMRHQPDQQHWPAEVTQIAVPLREQQL--------DLVAMMMLLGQKQI 292

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            S+ VE GA++A + + + LVD +I+Y +  ++G  G
Sbjct: 293 NSVWVEAGASLAGALLQAGLVDELIVYLAPKLLGHEG 329


>gi|227327505|ref|ZP_03831529.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 378

 Score =  199 bits (505), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 122/332 (36%), Positives = 180/332 (54%), Gaps = 22/332 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL  +R     T+ NP+V C+IV+DG ++G G     G PHAEV AL  AGE 
Sbjct: 13  DELYMARALELARRGCFTTAPNPNVGCVIVRDGEIVGEGYHFRAGEPHAEVHALRMAGER 72

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPCA  +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 73  ARGATAYVTLEPCSHHGRTPPCADALITAGVSRVVAAMQDPNPQVAGRGLHRLQQAGIAV 132

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 133 SHGLMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQR 192

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
            RA+S AIL    TVLADDP LT R + L               P+R+++D   +++   
Sbjct: 193 FRAESAAILSTSATVLADDPSLTVRWSELGADVQKRYSESDLRQPVRVVVDSQQRVTPQH 252

Query: 235 KIIKTALLAPVIIVTENDDP----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I+       +  V  ++      V  +   + N  +      DL  L+ +L  R + S+
Sbjct: 253 RIVNQPGETWLARVQADEQAWPQGVEQVMLPQHNGGV------DLVALMMVLGRRQINSV 306

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
            VE GA++A + +N+ +VD +I+Y +  ++GE
Sbjct: 307 WVEAGASLAGALLNAGVVDELIVYLAPKLLGE 338


>gi|284047735|ref|YP_003398074.1| riboflavin biosynthesis protein RibD [Acidaminococcus fermentans
           DSM 20731]
 gi|283951956|gb|ADB46759.1| riboflavin biosynthesis protein RibD [Acidaminococcus fermentans
           DSM 20731]
          Length = 371

 Score =  199 bits (505), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 120/326 (36%), Positives = 176/326 (53%), Gaps = 17/326 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D  +M  AL  +    G TS NP V C+IV  +G ++G+G     G PHAE+ A+ +AG 
Sbjct: 9   DEEYMQMALDLAEKARGCTSPNPLVGCVIVNPEGQIVGKGYHHKAGQPHAEIMAMADAGN 68

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +  G TAYVTLEPCSHYGR+ PC + +I  GI++VV   DDP+ +V+GRG   L + G+ 
Sbjct: 69  QVEGCTAYVTLEPCSHYGRTGPCCEALIRAGIKKVVAAADDPNPKVAGRGFARLQEAGVE 128

Query: 126 VDR-----MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           V R         + ++F+H   T     R  + LK A++ D  I  A   S  I+   S+
Sbjct: 129 VVRGVLADKANRQNEVFMHWMKT----GRPFVALKYAMTLDGKIATASGDSKWISNEQSR 184

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              H LR+  D ILVG  TVL DDP LTCRL  ++  +P+RI+LD H +L +D K+    
Sbjct: 185 TYAHKLRSIYDCILVGKNTVLNDDPSLTCRL--VEGKNPLRIVLDSHCQLPMDRKVFTDG 242

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIY-----CDCRDLKKLLTILVGRGVTSLLVEGG 295
               +++ +   D   A AF+  +   ++         DL  LL  L  +  TS+LVEGG
Sbjct: 243 EARTLLVTSLKADRDKAAAFQALDQVTVWQIPEKNGALDLGILLDRLGQQEKTSVLVEGG 302

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIG 321
           + V  +F + RL   +  + +  +IG
Sbjct: 303 SQVHGAFFDGRLAQRVYAFIAPCLIG 328


>gi|320173768|gb|EFW48951.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-5-phosphoribosylaminouracil
           reductase [Shigella dysenteriae CDC 74-1112]
          Length = 367

 Score =  198 bits (504), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
            I++           E+     + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 HIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            V+ G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVDAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIHH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|145632331|ref|ZP_01788066.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae 3655]
 gi|144987238|gb|EDJ93768.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae 3655]
          Length = 372

 Score =  198 bits (504), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 122/333 (36%), Positives = 184/333 (55%), Gaps = 16/333 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           SS D  FM  AL  +      T+ NPSV C++VK+G ++G G     G PHAE  AL +A
Sbjct: 5   SSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ++GATAYVTLEPCSHYGR+PPCA  +IE G+ +V+  + DP+ +V+G+GL+ LS  G
Sbjct: 65  GENSKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAG 124

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I     ++  + +     +L R  +    + LK+A+S D    MA   S  ITG  +++ 
Sbjct: 125 IESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDARSD 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231
           V  +RA+S A+L    TV+ADDP L  R +   E+            P+R+ILD   ++ 
Sbjct: 185 VQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSLHRIQ 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
              K+  T   +PV +V+     +    F      II      LK+L+  L  R + +L 
Sbjct: 245 PTHKLFLTH--SPVWLVSSETRDL--TGFPDFCEQIILPKENLLKELMRELGKRQINTLW 300

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           VE GA +A S I+++LVD +I+Y +  ++G+  
Sbjct: 301 VEAGANLAGSLIDAKLVDELIIYIAPKLLGDNA 333


>gi|77463964|ref|YP_353468.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Rhodobacter sphaeroides 2.4.1]
 gi|77388382|gb|ABA79567.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Rhodobacter sphaeroides 2.4.1]
          Length = 356

 Score =  198 bits (504), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 129/320 (40%), Positives = 187/320 (58%), Gaps = 7/320 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ ALR     +G T  NP+V C+IVK G V+GRG T  GG PHAE  AL +AG  A GA
Sbjct: 1   MAHALRLGARGLGRTWPNPAVGCVIVKAGRVVGRGWTCPGGRPHAEPVALAQAGAAALGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPCSH+GR+PPCA+ +I  G+ RVV    DPD RVSGRG   L + GI + +R+
Sbjct: 61  TAYVTLEPCSHHGRTPPCAEALIAAGLARVVTATGDPDPRVSGRGHAMLREAGIAVTERV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E+E +     +  R  E    +TLK+A + D  I  A   S  ITG +++  VH +R +
Sbjct: 121 LEAEARTAHAGFQKRVTEGLPFVTLKLAATLDGRIATASGESRWITGSLARRAVHAMRMR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DA++VG+GT +ADDP+L+ R  G   H P+RI++D   + + DS++ +TA   PV +  
Sbjct: 181 HDAVMVGVGTAIADDPDLSVRDLG-SGHQPVRIVVDSLLRHAPDSRLGRTARQVPVWLCH 239

Query: 250 ENDDPVLALAFRKKNINIIY-C----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
               P  A A    +  I+  C    D  + + +L  L   G+T +  EGGA +  + + 
Sbjct: 240 GPAAPEAARAAWAASGAILLECPAGPDGLEAEAVLRRLAAEGLTRIFCEGGARLGAALVR 299

Query: 305 SRLVDSIILYRSQIVIGEGG 324
           + L D ++ + +  +IGE G
Sbjct: 300 AGLCDELVTFTAGKLIGEEG 319


>gi|30248797|ref|NP_840867.1| riboflavin biosynthesis bifunctional RibD [Nitrosomonas europaea
           ATCC 19718]
 gi|30180392|emb|CAD84704.1| Riboflavin biosynthesis bifunctional RibD [Nitrosomonas europaea
           ATCC 19718]
          Length = 363

 Score =  198 bits (504), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 112/321 (34%), Positives = 178/321 (55%), Gaps = 4/321 (1%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D  +MS ALR +   +  TS NP V C+IV  G V+G G     G PHAE+ AL +A
Sbjct: 3   TALDYEYMSHALRLAERGLFTTSPNPRVGCVIVNGGKVVGTGWHERAGEPHAEIHALRKA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G+ A+GAT YVTLEPCSH+GR+PPC + +I+ G+ +VV+ ++DP+  V+G+G +WL + G
Sbjct: 63  GDLAKGATVYVTLEPCSHHGRTPPCVEALIQAGVCKVVMAMNDPNPHVNGQGKEWLQKAG 122

Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +   ++  + +     ++TR    R  +  KIA S D    +    S  IT   ++  
Sbjct: 123 IAIQAGLLADQAERLNIGFVTRMRHDRPWVRTKIAASFDGRTALKNGKSQWITSEPARRD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H  RA+S AIL GI +V  DDP+LT R   +    PMRI++D + +  L +K+++ A  
Sbjct: 183 GHKWRARSCAILTGISSVRKDDPQLTVRYITVSRQ-PMRIVVDSNLETPLQAKLLQNADT 241

Query: 243 APVIIVTENDDPVLALAFRKKNINII--YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
             +     + + +  L     +I ++       DLK ++  L   G+  LLVE G  +  
Sbjct: 242 TWIFTAQTSKEKIHRLEDTGAHIVVLPDLAGKVDLKAMMVKLAELGINELLVEAGPVLNG 301

Query: 301 SFINSRLVDSIILYRSQIVIG 321
           + + + LVD II Y +  ++G
Sbjct: 302 ALVTAGLVDEIIFYFAPSLLG 322


>gi|322381771|ref|ZP_08055725.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase-like
           protein/5-amino-6-(5-phosphoribosylamino) uracil
           reductase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321154159|gb|EFX46481.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase-like
           protein/5-amino-6-(5-phosphoribosylamino) uracil
           reductase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 362

 Score =  198 bits (504), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 121/344 (35%), Positives = 192/344 (55%), Gaps = 10/344 (2%)

Query: 23  GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
           G T  NP V C++VKDG +IG G   + G  HAEV AL+ AG EA G+TAYVTLEPCSH+
Sbjct: 7   GQTGVNPVVGCVLVKDGRIIGMGAHLHRGQGHAEVHALQMAGAEAEGSTAYVTLEPCSHF 66

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAY 141
           G++PPC+  +I+ G++RVV+   DP+ +V+G G++ L   GI VD  ++  E      A+
Sbjct: 67  GKTPPCSGRLIDHGVKRVVIAAVDPNPQVAGAGIERLRSAGIEVDVGLLAEEASAMNEAF 126

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
               V     +T+K A + D  I      S  ITG +S+  VH +R Q   ILV + TV+
Sbjct: 127 NKYIVTGMPFVTMKTASTLDGKIAAKTGDSKWITGDLSRAYVHTMRHQHQGILVSVDTVI 186

Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV-TENDDPVLALAF 260
           ADDP+L+ RL  +    P+RI+ D   +L L++++++     P I++ TE   P    A 
Sbjct: 187 ADDPQLSTRLT-VPALQPVRIVADSRLRLPLEAQVLQDLDRQPTIVLTTELSSPERRRAL 245

Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
            + + +++ C      DL+  +  L  R + S+L+EGG  +  + +   LVD I+L+ + 
Sbjct: 246 EELSASVLTCGSGPQVDLRLAMKQLGEREIGSILLEGGGRLNGAMLEQGLVDKIMLFVAP 305

Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
            +IG    P  +     E+    +R + F +    E +G+++CL
Sbjct: 306 KIIGGKLSPQAISMEGWERMKDALRLERFQA----EPVGEDICL 345


>gi|254796854|ref|YP_003081691.1| riboflavin biosynthesis protein RibD [Neorickettsia risticii str.
           Illinois]
 gi|254590091|gb|ACT69453.1| riboflavin biosynthesis protein RibD [Neorickettsia risticii str.
           Illinois]
          Length = 359

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 122/320 (38%), Positives = 175/320 (54%), Gaps = 22/320 (6%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M AA+  S +  G T+ NPSV C+IVKD  V+G+GVT   G PHAE  AL+ AG +ARGA
Sbjct: 1   MEAAVNASLFGQGFTADNPSVGCIIVKDDEVVGKGVTGINGSPHAEAVALKVAGIKARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
             Y TLEPC+H+GR+ PC   II  GI+ V +   DPD RV+G+G+Q L + GI+V   +
Sbjct: 61  DLYTTLEPCAHHGRTAPCTDLIIGSGIKNVFIGTRDPDTRVNGKGIQKLRESGIVVTTGI 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           ++ E  I    Y  RQV  +  +TLK A + D  I      S  IT    +  VH+LR  
Sbjct: 121 LKRECCISNIGYFYRQVFGKPFVTLKTATTLDGKIACFNGKSTWITSPALRRTVHMLRRI 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           S ++++   T+  DDP+L+CRL G+++ S ++++LD   ++S           +P   + 
Sbjct: 181 SSSVMISYSTLKHDDPQLSCRLPGVKKES-IKVVLDTRGEIS-----------SPNFKIF 228

Query: 250 ENDDPVLALA----FRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            ND  V +      F+ KN      +      DL  +L  L   G+ S+LVE G  +  S
Sbjct: 229 -NDGIVWSFGKKNTFKHKNFFNFEANLNGEKLDLGDILQQLGTMGINSVLVECGGKLFSS 287

Query: 302 FINSRLVDSIILYRSQIVIG 321
           F+N  L D II +RS  V G
Sbjct: 288 FVNGNLFDQIIWFRSNKVAG 307


>gi|295112158|emb|CBL28908.1| riboflavin biosynthesis protein RibD [Synergistetes bacterium SGP1]
          Length = 371

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 131/364 (35%), Positives = 191/364 (52%), Gaps = 20/364 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D  +M  AL  +   +G TS NP V C++V+DG ++G G     G  HAEV AL++A   
Sbjct: 11  DEYYMRRALSLALRGMGRTSPNPMVGCVLVRDGRILGEGWHRRCGEDHAEVAALKDAERR 70

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGA  YVTLEPC H+GR+PPCAQ ++  G+ RVV    DP+ RV+  GL  L + G
Sbjct: 71  GETARGAEVYVTLEPCCHFGRTPPCAQRLVREGVSRVVAGTADPNPRVNSGGLAVLREAG 130

Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + V    +E E +     ++  Q   R  +TLK A   D  + +    S  ITG  ++  
Sbjct: 131 VEVSAPCLEEEARRVNKGFIRVQTLGRPWVTLKAASGLDGRMALTDGDSRWITGPEARQW 190

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H +RA  DAILVG+ TVL DDPELT R    +  SP+R+ILD H +    ++ ++   L
Sbjct: 191 AHGMRASHDAILVGVSTVLKDDPELTVRHT--EGKSPLRVILDSHLRTPTSARALRGGCL 248

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298
               I+T + +   A A +     ++    R    DL+  L  L   GV +L+VEGG  V
Sbjct: 249 ----ILTISQEAERARALQAAGARVVPLPSREGRVDLEVALAFLAREGVLTLMVEGGPRV 304

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
             + +   L DS+ L+ +  V+GEG     + EG+   +   V   +   DV    +G N
Sbjct: 305 LTALMEGHLADSLSLFVAPRVLGEG---IGMGEGF---SPASVAESFNLKDVTSRPVGDN 358

Query: 359 LCLQ 362
           L ++
Sbjct: 359 LLVE 362


>gi|325289915|ref|YP_004266096.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965316|gb|ADY56095.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 398

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 118/332 (35%), Positives = 179/332 (53%), Gaps = 9/332 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D  +M  AL  +    G TS NP V CLIVKDG++IG G     G PHAEV AL  A
Sbjct: 36  SDQDKFYMQRALDLAEMAEGRTSPNPMVGCLIVKDGLIIGEGYHQKAGTPHAEVHALTAA 95

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G+ A GA  YVTLEPCSH+GR+PPC   +I+ G++RV V + DP+  V G+G+Q +   G
Sbjct: 96  GKRASGADVYVTLEPCSHFGRTPPCCDALIQAGVKRVFVALVDPNPLVRGKGIQKMRAAG 155

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +   ++E+E       ++         +  K A + D         S  IT  +S+  
Sbjct: 156 IEVFTGLLENEAAKLNEPFVKAMKTNLPFVLYKSASTADGKTASCTGDSRWITNDLSRKY 215

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LR   D I+VG  T+L D+P+LTCR+ G +   P+R+I+D    +  +++++  +  
Sbjct: 216 VHELRNSYDVIMVGSKTILQDNPQLTCRIAGGRH--PVRLIVDGTLSIPEEARLLSLSEG 273

Query: 243 APVIIVTENDDPVLALAFRKKNINI---IYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297
           + +I  T    P      +K   NI   +Y + R   LK L+  ++ +G  S+L+EGG  
Sbjct: 274 STIIATTRAASPKKIDKLKKIRNNIEVWVYSEERYVPLKTLMQDILEKGYQSVLLEGGGT 333

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
           +A   I  +LVD + L+ +  +IG+    SP+
Sbjct: 334 LAGQMIAEKLVDKVNLFIAPKIIGQSSF-SPI 364


>gi|297517703|ref|ZP_06936089.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli OP50]
          Length = 361

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 133/363 (36%), Positives = 188/363 (51%), Gaps = 20/363 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+A+GA
Sbjct: 1   MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
           TAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V   +
Sbjct: 61  TAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVSHGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V LLRAQ
Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLLRAQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDSKIIK 238
           S AIL    TVLADDP LT R + L E +           P+RI++D   +++   +I++
Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHRIVQ 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
                     T+ D        R   I   +    DL  L+  L  + + S+ VE G  +
Sbjct: 241 QPGET-WFARTQEDSREWPETVRTLLIP-AHKGHLDLVVLMMQLGKQQINSIWVEAGPTL 298

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           A + + + LVD +I+Y +  ++G        +P  LE+      F      + G DVCL 
Sbjct: 299 AGALLQAGLVDELIVYIAPKLLGSDARGLCSLPG-LEKLADAPQFKFKEIRHVGPDVCLH 357

Query: 354 YIG 356
            +G
Sbjct: 358 LVG 360


>gi|88801234|ref|ZP_01116773.1| riboflavin biosynthesis protein [Reinekea sp. MED297]
 gi|88776020|gb|EAR07256.1| riboflavin biosynthesis protein [Reinekea sp. MED297]
          Length = 366

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 129/369 (34%), Positives = 200/369 (54%), Gaps = 14/369 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M ++S DA +M+ AL+ +      T+ NP+V C+IV+DG ++G G     G PHAEV AL
Sbjct: 3   MSMTSHDA-WMAQALKLAARGRRTTTPNPNVGCVIVRDGELVGSGYHRKAGTPHAEVHAL 61

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAG +ARGATAYVTLEPCSHYG++PPCA  +I+ G+  VV  + DP+ +V+G+GL+ L 
Sbjct: 62  AEAGSKARGATAYVTLEPCSHYGKTPPCADALIKAGVANVVCAMTDPNPQVAGQGLEKLR 121

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI ++  ++ +E +     +L R    R  +  K+A S D    +A   S  ITG  +
Sbjct: 122 NAGIEVISGVLNAEAERLNRGFLKRMRTGRPWLVAKMAASLDGGTALANGDSQWITGPEA 181

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  V   RA S A++ G+ TV+AD+P L  RL+G  +  P+RIILD   +  + S I+ T
Sbjct: 182 RQDVQSGRADSCAVVTGVETVVADNPSLNVRLDG-ADRQPVRIILDTQARTPVPSTIV-T 239

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGG 295
                VII     +P+     +     ++      D  DL   L+    +    + +E G
Sbjct: 240 LPGRTVIIHGAQANPLSLERLQAAGFELVEMATANDHIDLPAFLSWCGQQAFNRVWLEAG 299

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           A +  +F    L+D + LY++ I++  GG   P+ +  L+      R D    DV   ++
Sbjct: 300 ATLTGAFAEQGLLDELWLYQAPIML--GGATRPVADFRLDSLKQAHRFDV--DDV--RFV 353

Query: 356 GKNLCLQEL 364
           GK++  Q L
Sbjct: 354 GKDIRWQLL 362


>gi|325276595|ref|ZP_08142337.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. TJI-51]
 gi|324098274|gb|EGB96378.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. TJI-51]
          Length = 376

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 125/339 (36%), Positives = 186/339 (54%), Gaps = 27/339 (7%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            DA +M+ AL  +R  +  T  NP V C+IV+DG V+G G     G PHAEV AL +AGE
Sbjct: 8   LDAHYMARALELARKGLFTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQAGE 67

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            ARGA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV  + DP+ +V+GRGL+ L++ GI 
Sbjct: 68  RARGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGRGLRRLAEAGIE 127

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   ++E+E +     +L R      ++  K+A+S D    MA   S  ITG  +++ V 
Sbjct: 128 VASGVLEAEARALNPGFLKRMEHGVPYVRAKLAMSLDGRTAMASGESQWITGPAARSAVQ 187

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHS--------PMRIILDPHFKLSLDS 234
            LRA+S  +L    +VLAD+  +T R +  GL   +        P+R+++D   +L LD+
Sbjct: 188 RLRARSSVVLTSAASVLADNARMTVRGSELGLDAETTALALSRPPLRVLVDGRLRLPLDA 247

Query: 235 KIIKTALLAPVIIVTE-NDDPVLALAFRK------KNINIIYCDCRDLKKLLTILVGRGV 287
              +     P ++VT   DDP  A A  +       N  +      DL  LL  L  RGV
Sbjct: 248 PFFQA---GPALVVTAVADDPGYAAAGHELLCLPGDNGQV------DLAALLHALGARGV 298

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
             +L+E GA++  +F    LVD   L+ +   +G    P
Sbjct: 299 NEVLLEAGASLVGAFARLGLVDEYQLFVAGTFLGSHARP 337


>gi|21241517|ref|NP_641099.1| 5-amino-6-uracil reductase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21106864|gb|AAM35635.1| riboflavin-specific deaminase [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 369

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 122/336 (36%), Positives = 185/336 (55%), Gaps = 24/336 (7%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S+ D R+M+ ALR +      T  NP V C+IV+DG+ +G G     G PHAEV AL  
Sbjct: 8   ASADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRA 67

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPC+HYGR+PPCA  +IE G+RRVV  + DP  +V+G G   L + 
Sbjct: 68  AGELARGATAYVTLEPCAHYGRTPPCALALIEAGVRRVVAAMADPFPQVNGGGFALLREA 127

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI ++  +M+++ +     +L+R    R  + +K+  S D    +A   S  IT   ++ 
Sbjct: 128 GIEVLSGVMQAQARTLNRGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITSADARA 187

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----PMRIILDPHFKLSLDSKII 237
            V   RA++ AIL G GTV+ADDP +T RL    E +    P+R++LD   + +L  + I
Sbjct: 188 DVQRWRARAGAILTGAGTVMADDPSMTVRLG---EDTPVVPPLRVVLDARLR-TLACRNI 243

Query: 238 KTALLAPVIIVTEN-------DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +      + +  EN       D   LA+               DL  +L +L  RG+  +
Sbjct: 244 RQGDAPTLYLHGENVAAQSLDDAQFLAMPLHAGRF--------DLAAVLALLAERGINEV 295

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            VEGGA ++ + + + LVD +++Y + +++G+   P
Sbjct: 296 HVEGGATLSGALLQAGLVDELLVYMAPVLLGDTAKP 331


>gi|269103255|ref|ZP_06155952.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163153|gb|EEZ41649.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 378

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 125/334 (37%), Positives = 185/334 (55%), Gaps = 20/334 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+FD + MS A+  ++     T+ NP+V C+IV +G ++G G     G PHAEV AL  A
Sbjct: 3   SAFDHKMMSRAIALAKKGRFTTAPNPNVGCVIVNNGQIVGEGFHYRAGLPHAEVFALRAA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G++ARGATAYVTLEPCSHYGR+PPCA  +IE GI RVV  + DP+ +V+G G+  L   G
Sbjct: 63  GDKARGATAYVTLEPCSHYGRTPPCALALIEAGISRVVCAMVDPNPKVAGNGVTLLQNAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + V+  ++E + K     ++        ++ LK+A S D    +A   S  ITG  ++  
Sbjct: 123 VTVEVGLLEQDAKALNLGFIKAMQTGMPYVQLKMASSLDGRTALANGESKWITGPQARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----QEHS------PMRIILDPHFKLS 231
           V   RAQ+ AIL    TV+ADDP +  R   L     Q++       P+R+I+D   +LS
Sbjct: 183 VQHFRAQAGAILSTSATVIADDPSMNIRWQELPFYIQQQYPKSELRLPIRVIIDSQNRLS 242

Query: 232 LDSKIIK---TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGV 287
            D ++       LLA      E  D V   +  +  I+      + DL +LL  LV  G+
Sbjct: 243 PDYQLFHLPGKTLLA----RCEQGDEVWPDSVTQLIISRTPDSSQLDLHELLQQLVKLGI 298

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
             + VE GA +A + + ++LVDS ILY++  ++G
Sbjct: 299 YHIWVEAGAGLAGALVQNQLVDSFILYQAPKLMG 332


>gi|228934673|ref|ZP_04097506.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824925|gb|EEM70724.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 360

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 123/350 (35%), Positives = 188/350 (53%), Gaps = 18/350 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  ++   G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARG 
Sbjct: 1   MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARGG 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPCSH+GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  +
Sbjct: 61  TIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            E + K     +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R +
Sbjct: 121 CEEKSKKMNEVFNKYIMTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHKIRNE 180

Query: 190 SDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + AILVG  TV  D+P LT R+ NG    +P+R+ILD   ++ +++ ++        I  
Sbjct: 181 NAAILVGANTVQKDNPSLTTRIPNG---RNPIRVILDSTLRIPMEANVVTDGEAPTWIFT 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           T N             + +         +L ++L +L  +GV+SLL+EGG  V  SFI +
Sbjct: 238 TSNHAAEKRKVLESAGVKVFVTSGEKHINLYEMLDVLGQKGVSSLLIEGGGEVNASFIEN 297

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----------NFMCVRRDY 345
            L+D +ILY +  +IG    PS +E   + K          +F  V +DY
Sbjct: 298 ELMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDAIEFKDISFTPVGKDY 347


>gi|332290249|ref|YP_004421101.1| hypothetical protein UMN179_02191 [Gallibacterium anatis UMN179]
 gi|330433145|gb|AEC18204.1| conserved hypothetical protein [Gallibacterium anatis UMN179]
          Length = 372

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 117/340 (34%), Positives = 184/340 (54%), Gaps = 33/340 (9%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D +FM+ A+  ++      + NP+V C++VK+G ++G+G     G PHAEV A+ EA
Sbjct: 7   SQQDHQFMALAIELAKKGRFTCTPNPAVGCVLVKNGEIVGKGYHEKAGEPHAEVMAMREA 66

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE+A GATAYVTLEPCSHYGR+PPCA+ +IE G++RVV  + DP+ +V+GRGL+ L+  G
Sbjct: 67  GEKANGATAYVTLEPCSHYGRTPPCAKGLIEAGVKRVVAAMQDPNPQVAGRGLKMLADAG 126

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I     +++ + +     +L R      ++ LK+A+S D    MA   S  ITG  ++  
Sbjct: 127 IETAVGLLQQQAEQLNKGFLKRMRTGFPYVQLKMAISIDGRTAMANGESQWITGEAARQD 186

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL---------QE--HSPMRIILDPHFKLS 231
           V   RA + AIL    TVL D+  L  R   L         QE    P+R+ILD   ++ 
Sbjct: 187 VQQYRAMASAILSSSKTVLTDNAALNVRWQQLPLEVQSIYPQEKLRQPLRVILDSQHQIE 246

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD---------LKKLLTIL 282
              ++             E++ P+L ++   +N+      C+          L  LL +L
Sbjct: 247 PKGRLF------------ESESPILLVSPSARNMAHFPAFCQQQQLVESPYYLTDLLNLL 294

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
             + + S+ VE GA +A + I + LVD +I+Y +  ++G+
Sbjct: 295 GKQQINSVWVEAGATLAGALIEAGLVDELIVYIAPKLLGD 334


>gi|297584480|ref|YP_003700260.1| riboflavin biosynthesis protein RibD [Bacillus selenitireducens
           MLS10]
 gi|297142937|gb|ADH99694.1| riboflavin biosynthesis protein RibD [Bacillus selenitireducens
           MLS10]
          Length = 361

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 133/365 (36%), Positives = 194/365 (53%), Gaps = 21/365 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  +    G TS NP V C+IVK   + G G     G  HAE QAL  A EE
Sbjct: 3   DDHYMKLAIEIAEATKGQTSPNPQVGCVIVKHNQIKGIGAHLKAGEWHAERQALHMAKEE 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GATAYVTLEPCSH+G++PPC+  +IE GI RVV    DP+  VSGRG++ L   GI V
Sbjct: 63  ANGATAYVTLEPCSHHGKTPPCSDALIEAGISRVVTASSDPNPDVSGRGIRRLRDAGIEV 122

Query: 127 DRMMESE-----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
              ++ E      + F HA +T+Q     ++TLK A S D  I  A   S  I+   S+ 
Sbjct: 123 VEGVQKERADRMNRWFFHA-ITKQT---PYVTLKFATSLDGKIATATGESQWISNEKSRA 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH +R Q D ILVG  TV+ D+P LT RL    + +P+RII+D   +   DS ++    
Sbjct: 179 DVHRIRHQVDGILVGRETVVQDNPSLTTRLPAGGK-NPIRIIMDRTLRTPPDSIMLNDG- 236

Query: 242 LAPVIIVTE----NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
            +PV IVT      +   + +A   + I I   D R ++++L +L  +G+++LLVEGG  
Sbjct: 237 QSPVWIVTNAGASQERKEMLIASGAEIIEITDKD-RFIEEMLEVLGRQGISTLLVEGGGT 295

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
           +   F+   L   +I Y++ ++IG     S      +++       +  + ++F  DV  
Sbjct: 296 INDQFLTRGLFHEVIHYQAPVIIGGKDAQSSFSGAGVQQLANAPRLLLDQEEWFDDDVKR 355

Query: 353 EYIGK 357
            Y+ K
Sbjct: 356 TYVYK 360


>gi|294141969|ref|YP_003557947.1| riboflavin biosynthesis protein RibD [Shewanella violacea DSS12]
 gi|293328438|dbj|BAJ03169.1| riboflavin biosynthesis protein RibD [Shewanella violacea DSS12]
          Length = 379

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 126/338 (37%), Positives = 189/338 (55%), Gaps = 22/338 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FMS A++ +R  +  T  NP V C+I  D  ++G G     G PHAEV AL  A + 
Sbjct: 6   DTEFMSRAIKLARRGLYTTRPNPCVGCVITLDDQILGEGFHIQAGGPHAEVHALAMATKR 65

Query: 67  A-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           A     +GATAYVTLEPCSHYGR+PPCA+ +I+ GI RVVV V+DP+ +VSGRG++ L  
Sbjct: 66  ASQAALKGATAYVTLEPCSHYGRTPPCAEALIKHGISRVVVAVEDPNPQVSGRGIKMLRD 125

Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI VD  ++  E       ++ R       +T+K+A S D    ++   S  ITG  S+
Sbjct: 126 AGIEVDVGLLSDEAAGINPGFMKRMERGLPWVTVKLASSLDGKTALSNGASKWITGPESR 185

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCR---LNGLQE-------HSPMRIILDPHFKL 230
             V  LRA+++A++ GI TVL DDP L  R   L  L E       H P+R++LD   +L
Sbjct: 186 RDVQRLRARNEALVTGIETVLLDDPCLNVRHSELGLLSEQVDADSLHQPLRVVLDSRARL 245

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN-IIYCDCRDLKKLLTIL---VGRG 286
           +  +K+    + +P+++V+  D P        ++++ +I     D +  LT L   +G+ 
Sbjct: 246 TSTAKLF--TVTSPILLVSCIDYPQAEKDTWPQHVSGLILASDNDGRVELTALFAHLGKT 303

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
             S+L+E GA +A S I+    D +ILY++  ++G  G
Sbjct: 304 YNSVLIEAGATLAGSVISQNHADELILYQAMKILGSNG 341


>gi|229513912|ref|ZP_04403374.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae TMA 21]
 gi|229349093|gb|EEO14050.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae TMA 21]
          Length = 367

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 123/339 (36%), Positives = 180/339 (53%), Gaps = 27/339 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +AGE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+G+G+Q L
Sbjct: 61  MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120

Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI V+  ++E + +     +L R       + LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLEEDARALNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R   L               P+R+ILD  
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGR- 285
            +L             P + + +   PVL +A     + I   + + DL++LL  L  + 
Sbjct: 241 HQLH------------PELALYQTPSPVLRVASENAELCISAENGKLDLRELLAQLAQQH 288

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            V  LLVE G+ +A S I  +LVD IILY +  ++G  G
Sbjct: 289 NVNQLLVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDG 327


>gi|308048548|ref|YP_003912114.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           ;5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Ferrimonas balearica DSM 9799]
 gi|307630738|gb|ADN75040.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           ;5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Ferrimonas balearica DSM 9799]
          Length = 373

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 127/333 (38%), Positives = 187/333 (56%), Gaps = 20/333 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ DAR M+ AL  +R     T  NP V C++V+DG V+G G     G PHAEV AL  A
Sbjct: 3   STDDARHMARALELARRGQLTTRPNPRVGCVLVRDGEVVGEGFHIRAGGPHAEVHALRAA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G++ARGATAYVTLEPCSHYGR+PPC+Q +I+ G+ RVV  + DP+ +V+GRGL  L   G
Sbjct: 63  GDKARGATAYVTLEPCSHYGRTPPCSQALIDAGVARVVAAMVDPNPQVAGRGLAMLEAAG 122

Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I     +M +E +     ++ R    R  + +K+A S D    +A   S  ITG  ++  
Sbjct: 123 IETQHGLMANEAEAVNPGFMKRMRTGRPFVRVKLAASLDGRTALANGQSKWITGPEARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII---LDPHFKLSLDSKIIKT 239
           V  LRA SDA++ G  +VLAD+P +  R   L  H   RI    L    ++ +D K    
Sbjct: 183 VQRLRAISDAVITGADSVLADNPSMNVRHAELG-HWQSRISEADLQQPLRVVVDGK---- 237

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNIN-------IIYCDCRDLKKLLTIL---VGR-GVT 288
           A LAP + + ++D P++  + R  + +           D  + K  LT L   +GR  + 
Sbjct: 238 ARLAPPLKLLDSDGPLMLASLRGYDCHWPASVSVWPAADNGEGKVALTALLDELGRQQIN 297

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            +LVE G+A+A +FI++ L D + LY++  ++G
Sbjct: 298 EVLVEAGSALAGAFISAGLWDELWLYQAPKLMG 330


>gi|301022597|ref|ZP_07186469.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 69-1]
 gi|300397478|gb|EFJ81016.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 69-1]
          Length = 367

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 QRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++           E+     + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|311030745|ref|ZP_07708835.1| riboflavin biosynthesis protein RibD [Bacillus sp. m3-13]
          Length = 367

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 126/328 (38%), Positives = 189/328 (57%), Gaps = 10/328 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG-E 65
           D  +M  A+  ++   G TS NP V  ++VK+G ++G G     G  HAEV A++ AG +
Sbjct: 3   DQYYMKFAIDLAKRATGQTSPNPVVGSVVVKNGEIVGFGAHLRAGEAHAEVNAIQMAGVD 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +A G+T YVTLEPCSH+G++PPC+  +I+  + RVV+   DP+  V+GRG++ L + GI 
Sbjct: 63  KANGSTVYVTLEPCSHFGKTPPCSDLLIQSQVSRVVIASTDPNPLVAGRGIEKLRKAGIE 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V+  +  E  + L+      ++  +  +TLK A S D         S  ITG  S+  VH
Sbjct: 123 VELGVCEEEALALNQVFFHHIKTGKPFVTLKTAASLDGKTATHRNESKWITGPDSRLDVH 182

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
             R Q DAILVG+GTVLADDP L  RL NG +  +P+RIILD H +  LDSK++ T   A
Sbjct: 183 QYRHQHDAILVGVGTVLADDPSLDTRLPNGGK--NPIRIILDSHLRTPLDSKVL-TDGKA 239

Query: 244 PVIIVTENDDPVLALAFRKKNINI----IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           P  IVT +   +  +AF +    +    +  +  ++ +LL++L    +TSL VEGGA V 
Sbjct: 240 PTWIVTGSKPDLEKMAFLEGQEGVRVFTLPMEKVEVNELLSLLGEEEITSLFVEGGATVN 299

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS 327
            SF+  + +  +I Y +  +IG    P+
Sbjct: 300 GSFLKEKAIQQLITYIAPKLIGGKAAPT 327


>gi|307137057|ref|ZP_07496413.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli H736]
          Length = 361

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 132/367 (35%), Positives = 190/367 (51%), Gaps = 28/367 (7%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+A+GA
Sbjct: 1   MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
           TAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V   +
Sbjct: 61  TAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVSHGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V LLRAQ
Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLLRAQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDSKIIK 238
           S AIL    TVLADDP LT R + L E +           P+RI++D   +++   +I++
Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHRIVQ 240

Query: 239 TALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
                      E+     + V  L   +   ++      DL  L+  L  + + S+ VE 
Sbjct: 241 QPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSIWVEA 294

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349
           G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      + G D
Sbjct: 295 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRHVGPD 353

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 354 VCLHLVG 360


>gi|218693874|ref|YP_002401541.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli 55989]
 gi|218350606|emb|CAU96298.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli 55989]
          Length = 367

 Score =  197 bits (502), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP LT R + L E +           P+RI++D   ++  + 
Sbjct: 183 QRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVMPEH 242

Query: 235 KIIK----TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++    T         +E  + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWFARTQEDSSEWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|153826812|ref|ZP_01979479.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MZO-2]
 gi|149739399|gb|EDM53641.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MZO-2]
          Length = 367

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 181/339 (53%), Gaps = 27/339 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +AGE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+G+G+Q L
Sbjct: 61  MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120

Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI V+  ++E++ +     +L R       + LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R + L               P+R+ILD  
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGR- 285
            +L             P + + +   PVL +A     + I   + + DL++LL  L  + 
Sbjct: 241 HQLH------------PELALYQTPSPVLRVASENAELCISAENGKLDLRELLAQLAQKH 288

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            V  L VE G+ +A S I  +LVD IILY +  ++G  G
Sbjct: 289 NVNQLWVEAGSQLAKSLIEQKLVDEIILYLAPKLMGSDG 327


>gi|71906245|ref|YP_283832.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Dechloromonas aromatica RCB]
 gi|71845866|gb|AAZ45362.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Dechloromonas aromatica RCB]
          Length = 367

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 119/326 (36%), Positives = 181/326 (55%), Gaps = 9/326 (2%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S+ D   M+ AL+ +   +  TS NP V C++V+DG ++G G     G PHAEV AL
Sbjct: 1   MSFSAVDHGMMARALQLAERGLWTTSPNPRVGCVLVRDGEIVGEGWHEKAGEPHAEVHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE A+G TAYVTLEPCSH+GR+PPCA+ +I  G+ RVV  + DP+  VSG+GL  L 
Sbjct: 61  RSAGERAKGTTAYVTLEPCSHHGRTPPCAEALIAAGVSRVVAAMTDPNPLVSGKGLALLR 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI     ++E+E +     +++R    R  + LK+A S D    +    S  ITG  +
Sbjct: 121 AAGIETASGLLENEARELNIGFVSRMTRGRPWLRLKVAASLDGKTALNNGVSQWITGPDA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H  RA++ AIL GIGTV  DDP+L+ R +      P+R+++D   +  ++++I++ 
Sbjct: 181 RRDGHAWRARACAILTGIGTVRDDDPQLSVR-DVATTRQPLRVVVDSKLETPVNARILQG 239

Query: 240 ALLAPVII--VTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGG 295
               PV+I    EN+  + +L     ++ I+       DL  LL  L  RG+  +  E G
Sbjct: 240 ---GPVLIAGAVENNARIESLRSLGADVLILPNPSGKVDLIALLVALGQRGINEVHAEAG 296

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIG 321
             +  S +   LVD ++LY +  +IG
Sbjct: 297 FKLNGSLLREGLVDELLLYLAPCLIG 322


>gi|330830923|ref|YP_004393875.1| pyrimidine deaminase/reductase RibD [Aeromonas veronii B565]
 gi|328806059|gb|AEB51258.1| Pyrimidine deaminase/reductase RibD [Aeromonas veronii B565]
          Length = 369

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 125/343 (36%), Positives = 182/343 (53%), Gaps = 35/343 (10%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D ++MS AL  +R     T+ NP V  ++VKDG+V+G G     G PHAEV AL  A
Sbjct: 3   SQDDYQWMSRALELARRGRYTTAPNPCVGAVLVKDGVVVGEGWHQKAGEPHAEVYALRAA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G+ ARGATAYVTLEPCSH+GR+PPCA+ +I  G+ RVV  + DP+ +V GRGL+ LS+ G
Sbjct: 63  GDNARGATAYVTLEPCSHHGRTPPCAEALINAGVARVVAAMVDPNPQVGGRGLRMLSEAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  D  ++ SE +     +  R       +T+K+  S D    MA   S  IT   ++  
Sbjct: 123 IKTDFGLLASEAEALNPGFFKRMRTAFPRVTVKLGASLDGRTAMASGESQWITSPDARRD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLS 231
           V  LRA+ DA+L    TVLAD   LT R + L               P+R+I+D   +L+
Sbjct: 183 VQRLRARHDAVLSSAETVLADGASLTVRWDELPPSVKVSYPKETLRQPLRVIVDSQNRLT 242

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRK---------KNINIIYCDCR-DLKKLLTI 281
                       P + + +N+ PVL LA  K         + + +   D + DL  L  +
Sbjct: 243 ------------PELPLFQNESPVL-LARHKASGEWPEWVQQLELPLLDGKLDLVSLFML 289

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           L  + V S+LVE G  +  + +   LVD ++LY++  ++G+ G
Sbjct: 290 LAKQNVNSVLVEAGPRLCGALLEKGLVDELVLYQAPKLMGDEG 332


>gi|59711307|ref|YP_204083.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Vibrio fischeri ES114]
 gi|59479408|gb|AAW85195.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Vibrio fischeri ES114]
          Length = 372

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 124/341 (36%), Positives = 184/341 (53%), Gaps = 24/341 (7%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  ++ D   M  A+  ++  +  T+ NP+V C++VK+G +IG G     G PHAEV AL
Sbjct: 1   MTFTTQDHLMMQKAILLAKQGIYTTAPNPNVGCVLVKNGKIIGEGAHLKAGEPHAEVHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AG+EA+GATAYVTLEPCSHYGR+PPCA+ +I+ G+++V+  + DP+ +V+GRGL  L 
Sbjct: 61  RQAGKEAQGATAYVTLEPCSHYGRTPPCAEGLIKAGVKKVICAMVDPNPQVAGRGLAMLD 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI     ++E++ +     +LTR    +  + LK+A S D    +    S  IT   +
Sbjct: 121 EAGIETASGLLEADARALNPHFLTRMETGKPFVQLKMAASLDGKTALKNGVSQWITSKEA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----QE-------HSPMRIILDPHF 228
           +  V   RAQS AIL    TV+ DD  L  R + L    QE         PMR ILD   
Sbjct: 181 RQDVQRYRAQSGAILSTAKTVIDDDASLNVRWSDLPPSIQESYQQASIRQPMRFILDRQH 240

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR--- 285
            L+ D K+ + A    V I ++N  P+        + N + C   D +  L  +V +   
Sbjct: 241 SLTSDLKLFQ-ASDEVVTISSQNTHPI------GTSENHMQCRVDDGQLDLKEVVNKISR 293

Query: 286 --GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
              V  + VE GA +A S IN  LVD +I+Y +  ++G  G
Sbjct: 294 DFNVNHIWVEAGATLAASMINDNLVDELIIYLAPKLMGADG 334


>gi|260495221|ref|ZP_05815349.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_33]
 gi|260197278|gb|EEW94797.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_33]
          Length = 369

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/363 (33%), Positives = 199/363 (54%), Gaps = 17/363 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M+ A+  ++   G  + NP V  ++VKDG +IG G     G PHAEV AL EAGE 
Sbjct: 6   DEKYMARAIELAKRGTGSVNPNPLVGAVVVKDGKIIGEGWHKKYGGPHAEVWALNEAGEN 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YVTLEPCSH G++PPCA+ I+E GI+R VV   DP+  V+G+G++ +   GI V
Sbjct: 66  AKGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVVACIDPNPLVAGKGIKIIEDAGIEV 125

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E K     +L     K  ++ LK  ++ D  I      S  IT  I++ +V  
Sbjct: 126 KLGVLEKEAKDVNKIFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKVQF 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           LR +  AI+VGI TVL D+P L  RL+    G+++ +P R+++DP+ +  +++K +    
Sbjct: 186 LRTKFMAIMVGINTVLKDNPSLDSRLDEKKFGIEKRNPFRVVIDPNLESPIEAKFLNFN- 244

Query: 242 LAPVIIVTENDDPVLALAFRKKNI--NIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297
               II+T ND+  L      KN+    I+ + +   +K +L  L    + S+L+EGG+ 
Sbjct: 245 DGKAIIITSNDNRELEKIKEYKNLGTRFIFLEGKIFKMKDILKELGKLEIDSVLLEGGSG 304

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV------RRDYFGSDVC 351
           +  +     ++D+  ++ +  +IG+     P   G+   N   V      + + +G ++ 
Sbjct: 305 LISTAFKENIIDAAEIFIAPKIIGDNS-AIPFINGFNFDNMEDVFKLPNPKFNIYGDNIS 363

Query: 352 LEY 354
           +E+
Sbjct: 364 IEF 366


>gi|241759512|ref|ZP_04757616.1| riboflavin biosynthesis protein RibD [Neisseria flavescens SK114]
 gi|241320294|gb|EER56627.1| riboflavin biosynthesis protein RibD [Neisseria flavescens SK114]
          Length = 367

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 135/364 (37%), Positives = 204/364 (56%), Gaps = 16/364 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D + M  AL  ++     TS NP V C+I     ++G+G     G PHAEV AL +A
Sbjct: 3   SALDTQMMQTALELAKLGRFSTSPNPRVGCVIAHGAQIVGQGFHVKAGEPHAEVHALRQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G  A+GATAYVTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   G
Sbjct: 63  GAAAKGATAYVTLEPCSHYGRTPPCAEALVHSGVTRVVAAMTDPNPLVAGKGLSMLEAAG 122

Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  ++E++ +     +L+R    R  + LK A S D    ++   S  ITG  ++  
Sbjct: 123 IRTESGLLEAQARELNRGFLSRIERGRPFVRLKCAASLDGKTALSDGRSFWITGEAARED 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V +LRA+S A+L GIGTVLAD+P+L  R    L++  P RI+LD   ++ LD  ++ T  
Sbjct: 183 VQILRAESCAVLTGIGTVLADNPKLNVRSFPTLRQ--PARIVLDSRLQIPLDCHLV-TDT 239

Query: 242 LAPVIIVTENDDPVLALAFRK-KNINII----YCDCR-DLKKLLTILVGRGVTSLLVEGG 295
            +P +IVT + D     A R  ++I II    + + R +L  L+  L   G   +LVE G
Sbjct: 240 ESPTVIVTLSSDEQRLQALRTFEHIRIIRPSEHINGRINLLSLMPQLAEFGFGEVLVEAG 299

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           + +A +F+   LVD I+LY++  ++G G    PL    L +N   +  D       +E I
Sbjct: 300 STLASAFLKDDLVDEIVLYQAPKLLGAG---KPLFS--LSENPAVLLSDSPWQSQSVEII 354

Query: 356 GKNL 359
           G+++
Sbjct: 355 GQDI 358


>gi|88608126|ref|YP_506383.1| riboflavin biosynthesis protein RibD [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600295|gb|ABD45763.1| riboflavin biosynthesis protein RibD [Neorickettsia sennetsu str.
           Miyayama]
          Length = 372

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/321 (37%), Positives = 175/321 (54%), Gaps = 22/321 (6%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M AA+  S +  G T+ NPSV C+IVKD  V+G+GVT   G PHAE  AL+ AG +ARG
Sbjct: 13  YMEAAVNASLFGQGFTADNPSVGCIIVKDDEVVGKGVTGINGSPHAEAVALKVAGIKARG 72

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128
           A  Y TLEPC+H+GR+ PC   IIE GI+ V +   DPD RV+G+G+Q L + GI+V   
Sbjct: 73  ADLYTTLEPCAHHGRTAPCTDLIIESGIKNVFIGTRDPDTRVNGKGIQKLQESGIVVTTG 132

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +++ E  +    Y  RQV  +  + LK A + D  I      S  IT    +   H+LR 
Sbjct: 133 ILKRECCVSNIGYFYRQVLGKPFVILKTATTLDGKIACFNGKSAWITSPAMRRTAHMLRR 192

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
            S ++++   T+  DDP+L+CRL G+++ S ++++LD   ++S           +P   +
Sbjct: 193 MSSSVMISYSTLKHDDPQLSCRLPGVKKES-IKVVLDTRGEIS-----------SPNFKI 240

Query: 249 TENDDPVLALA----FRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300
             ND  V +      F+ KN      +      DL+ +L  L   G+ S+LVE G  +  
Sbjct: 241 F-NDGIVWSFGKRNIFKHKNFFNFEANLNGEMLDLEDVLQQLGTMGINSVLVECGGKLFS 299

Query: 301 SFINSRLVDSIILYRSQIVIG 321
           SFI   L D II +RS  V G
Sbjct: 300 SFITGDLFDQIIWFRSNKVAG 320


>gi|95929567|ref|ZP_01312309.1| riboflavin biosynthesis protein RibD [Desulfuromonas acetoxidans
           DSM 684]
 gi|95134264|gb|EAT15921.1| riboflavin biosynthesis protein RibD [Desulfuromonas acetoxidans
           DSM 684]
          Length = 364

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 127/356 (35%), Positives = 192/356 (53%), Gaps = 14/356 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  +R  +G T+ NP V  +IV+DG V+GRG     G PHAEV AL +A ++ARGA
Sbjct: 1   MQIALDLARKALGRTTPNPPVGAVIVRDGQVVGRGFHPKAGEPHAEVFALRDAADQARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129
            AYVTLEPCSH+GR+PPC + +I  G+ RV V + DP+ +VSG+G++ L   G+ V+  +
Sbjct: 61  DAYVTLEPCSHHGRTPPCCEALIAAGVSRVFVGLIDPNPQVSGQGVERLRAAGVEVEVGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E++ +  +  ++   +  R    LK A++ D         S  IT   S+  VH LR Q
Sbjct: 121 LETQCRRLIAPFIKHMISGRPLFILKSALTLDGRTATRTGHSQWITSARSREHVHRLRDQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DAI+VG GT L D+P LT RL     H P+RI++D   +L   S +I     +P  +VT
Sbjct: 181 VDAIMVGSGTALRDNPRLTTRLTP-PGHDPIRIVVDSRLQLPETSHLINHQSASPTWVVT 239

Query: 250 -ENDDPVLALAFR-KKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
               DP    A +    + ++          DL  L  +L  R + S+LVEGG+ +  S 
Sbjct: 240 VAQADPAKIKALQVHAGVEVMTVAATSAGQVDLPALADMLGQRDIQSVLVEGGSVLNQSL 299

Query: 303 INSRLVDSIILYRS-QIVIGEGGIPSPLEEGYLEKNFMCVRRDY----FGSDVCLE 353
            ++ L+D +++Y + +++ G  G      +G    +     RD+     G DV LE
Sbjct: 300 FSAGLIDRVMVYMAPKLLGGNDGFGLFTGQGVDHLDDALQLRDFRVTCLGDDVLLE 355


>gi|320354106|ref|YP_004195445.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Desulfobulbus propionicus DSM 2032]
 gi|320122608|gb|ADW18154.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Desulfobulbus propionicus DSM 2032]
          Length = 368

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 126/365 (34%), Positives = 199/365 (54%), Gaps = 17/365 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL  +R  +G TS NP+V  ++VKDG V+GRG     G PHAEV AL +AG +ARG
Sbjct: 8   YMELALAEARKGLGRTSPNPAVGAVVVKDGKVVGRGYHHRAGTPHAEVHALADAGPQARG 67

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           AT YVTLEPC+H GR+PPC + I+  GI  VV+ + DP+ RV+G G  +L Q+G+ +V  
Sbjct: 68  ATIYVTLEPCNHTGRTPPCTEAILAAGIAMVVIGMADPNPRVAGGGAAYLRQRGLEVVSG 127

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++E   +   + ++         + +K  +S D  I         +TG  S   VH LR 
Sbjct: 128 VLEQPCRALNYPFIKHSTTGLPWVMMKAGLSLDGKITFRSRQGAALTGEESWRFVHRLRN 187

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           Q+DAIL+G+ T + DDP LT RL G+ +   P+R++LD   +L   ++++     A   +
Sbjct: 188 QTDAILIGVETAIIDDPSLTTRLEGVADTRDPVRVVLDSCLRLPPQARMLHQRSTAETWV 247

Query: 248 V------TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           V      ++ ++ ++    R   + +      DL  +L +L  R +TS+LVEGGA +  +
Sbjct: 248 VCGSEASSDREEQLVRAGARVLRLALGADGRVDLPAMLRLLGARNLTSVLVEGGAGIHGA 307

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG--SDVCLEYIGKNL 359
               RLVD ++L+ +  ++G+ G P       L   +   RRD     +DV L+ +G + 
Sbjct: 308 MYGQRLVDELLLFYAPFIVGDQGTP-------LVSGYSLARRDQAPRLADVALQPLGNDF 360

Query: 360 CLQEL 364
             + L
Sbjct: 361 LFRAL 365


>gi|218289836|ref|ZP_03494036.1| riboflavin biosynthesis protein RibD [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240127|gb|EED07312.1| riboflavin biosynthesis protein RibD [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 371

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 121/362 (33%), Positives = 192/362 (53%), Gaps = 20/362 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D R+M  AL  +R   G TS NP V  ++V  G+V+G+G     G PHAEV AL  AG+ 
Sbjct: 4   DERYMRMALEVARLGEGQTSPNPMVGAIVVNGGLVVGQGAHLMAGTPHAEVHALRMAGDA 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YVTLEPC+H+GR+PPC   I+  G+RRVVV   D D R +G G++ L   G+ V
Sbjct: 64  AKGATLYVTLEPCNHHGRTPPCTDAILASGVRRVVVAALDVDPRTAGLGVKRLQDAGLEV 123

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E +     +  R    R ++  K+A++    +  +   S  +TG  ++  VH 
Sbjct: 124 SVGVLEVEARELNRHFFHRVETGRPYVVYKVAMTLSGHVAASSGHSQYVTGLAAREDVHR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCR---LNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           LR    AI VG+GTVL DDPELT R       ++  P+R++ D   +    ++++ TA  
Sbjct: 184 LRQIIPAIGVGVGTVLTDDPELTARDLATGTRRDRQPLRVVFDTRLRTPPTARLL-TAPG 242

Query: 243 APVIIVTEND--DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
             +++ +E     P  +    + ++ I+    R    DL   L+ +   G  +LLVEGG 
Sbjct: 243 RTLLLTSERMAFSPAASRLAAQGDVRIVPVPERDGHLDLHAALSAIAAEGANALLVEGGP 302

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC------VRRDYFGSDV 350
            +A + + SRL+D + +Y +  ++  GG+P+    G   ++         VR ++ G D+
Sbjct: 303 TLASALLQSRLIDEVRVYLAPKLLA-GGLPA--FAGAFTQSMSASVELHGVRSEWVGDDL 359

Query: 351 CL 352
            L
Sbjct: 360 VL 361


>gi|298488889|ref|ZP_07006913.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298156564|gb|EFH97660.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 366

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 127/338 (37%), Positives = 177/338 (52%), Gaps = 33/338 (9%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL  +R  +  T  NP V C+IV+DG ++G G     G PHAEV AL +AGE ARGA
Sbjct: 1   MARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQAGELARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129
           TAYVTLEPCSH GR+PPCA  ++  G+ RVV  + DP+  VSGRGL  L   GI V   +
Sbjct: 61  TAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPDVSGRGLLRLMNAGIGVQCGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +ESE +     +L R    + +I +K+A+S D    MA   S  ITG  +++ V  LRAQ
Sbjct: 121 LESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARSAVQRLRAQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSLDSKIIKT 239
           S  +L G  TVLAD   LT R + L              P+R+++D   ++ LD+   + 
Sbjct: 181 SSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLRVPLDAPFFQA 240

Query: 240 ALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
                 ++VT           E    +LALA    ++        DL+KL+  L  RGV 
Sbjct: 241 ---GSALVVTCAAASARGRYQEEGHEMLALADSAGHV--------DLRKLMGELATRGVN 289

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            +LVE G  +A +F    LVD   ++ +   +G    P
Sbjct: 290 EVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARP 327


>gi|94498080|ref|ZP_01304643.1| riboflavin biosynthesis protein RibD [Sphingomonas sp. SKA58]
 gi|94422515|gb|EAT07553.1| riboflavin biosynthesis protein RibD [Sphingomonas sp. SKA58]
          Length = 317

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 126/315 (40%), Positives = 174/315 (55%), Gaps = 41/315 (13%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+AA+  SR   GL++ NP+V CLIV+DG V+GRG T  GG PHAE QAL++A E+AR A
Sbjct: 1   MAAAIALSRRGRGLSTPNPNVGCLIVRDGRVVGRGWTQKGGRPHAEAQALDQAMEQARDA 60

Query: 71  TAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128
           TAYVTLEPC H   R P CA  +   G+ RVV+ + DPD R +G+G  WL  +G+ V+  
Sbjct: 61  TAYVTLEPCFHLSPRGPRCADLLARAGVARVVIALRDPDPRTNGQGAAWLRDRGVAVEMG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++  E    +  ++ RQ   R H+TLK+ +S D  I +A   S  ITG  ++   HL RA
Sbjct: 121 LLADEAAAAMAGFVLRQTLGRPHVTLKLGLSLDGRIALANGSSRWITGPQARAHAHLERA 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DAILVG GT+ AD P L  RL GL++ +P R++L          +I      AP  I 
Sbjct: 181 RHDAILVGGGTLRADAPRLDVRLPGLEDRAPRRLLLTRGPAPGNWERIG-----APEEIA 235

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           T +                                   V  LLVEGGA  A +F+ + L+
Sbjct: 236 TLDR----------------------------------VDHLLVEGGAGAAAAFLRADLI 261

Query: 309 DSIILYRSQIVIGEG 323
           D ++LYR+ I+IG+G
Sbjct: 262 DRLLLYRAPILIGDG 276


>gi|329122085|ref|ZP_08250693.1| riboflavin biosynthesis protein RibD [Dialister micraerophilus DSM
           19965]
 gi|327466892|gb|EGF12408.1| riboflavin biosynthesis protein RibD [Dialister micraerophilus DSM
           19965]
          Length = 378

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/338 (34%), Positives = 179/338 (52%), Gaps = 18/338 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++MS AL  ++     T TNP V  ++VK+G V+G G     G  HAEV A +   E 
Sbjct: 6   DEKWMSHALDLAKHGYWYTETNPLVGAVLVKNGKVVGEGWHKKYGDVHAEVNAFKNCKEN 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
              AT YVTLEPC HYG++PPC   +++  ++RVV+ + DP+  VSG+ ++ L + GI +
Sbjct: 66  TEHATLYVTLEPCCHYGKTPPCLNLVLQKKVKRVVIAMKDPNPLVSGKSIKILKENGIQV 125

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  ++E+E       ++    E +  +  K A+S D  I      S  I+   S+N VH 
Sbjct: 126 IVGVLENEAVKLNEIFIKYITEHKPFVLYKAAMSIDGKISCYTGDSKWISSETSRNDVHY 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL------NGLQE-----HSPMRIILDPHFKLSLDS 234
           LR +  AI+VG GT+  D+P LT R       NG +E      +P+RII+D      +DS
Sbjct: 186 LRNKYKAIMVGAGTIKKDNPSLTSRFYIINKKNGEKELMKNQRNPIRIIVDGKLSSPIDS 245

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTS 289
           K+ +      V++ T   D      F+ K I +IY +       DL K L IL  +G+ S
Sbjct: 246 KVFQDG-GKTVVLTTSYADKKNVEKFKNKGIELIYSNLGNDGKVDLNKSLEILARKGINS 304

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           +L+EGGA  A    N ++VD + +Y + I+IG    PS
Sbjct: 305 ILLEGGAETAAEAFNQKIVDKLRIYIAPIIIGGKTSPS 342


>gi|260438155|ref|ZP_05791971.1| riboflavin biosynthesis protein RibD [Butyrivibrio crossotus DSM
           2876]
 gi|292809343|gb|EFF68548.1| riboflavin biosynthesis protein RibD [Butyrivibrio crossotus DSM
           2876]
          Length = 360

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 130/362 (35%), Positives = 191/362 (52%), Gaps = 20/362 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++   G TS NP V  +IVKDG +IG G  A  G  HAE  A++    +
Sbjct: 3   DRDYMLRAISLAKKGTGYTSPNPLVGAVIVKDGRIIGEGYHAIYGDLHAERNAIKNLTVD 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPC HYG+ PPC + I+  GI +VV+   DP+  VSGRG  +L   GI +
Sbjct: 63  AKGATIYVTLEPCCHYGKQPPCTEAILAAGITKVVIGSRDPNPLVSGRGADFLRSHGIEV 122

Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           ++  M  E      IF H Y+T   EK  ++ +K A+S D  I      S  +T   S+N
Sbjct: 123 IEDFMREECDELNPIFFH-YIT---EKTPYVVMKYAMSMDGKIATRTGSSRYVTNEFSRN 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +V  +R +   I+ GIGTVLADDP L  R+ GL+  SP+RII D   ++ L+S+I +TA 
Sbjct: 179 EVQKMRHKYRGIMAGIGTVLADDPMLNTRIEGLR--SPVRIICDSELRIPLNSRICQTAG 236

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
               II   N       A     I ++         +L +L+ +L    + S+L+EGG  
Sbjct: 237 EYETIIACGNAPQNRISALEALGITVLQVPDETGKVNLTELMYVLHDMKIDSILLEGGGT 296

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
           +  S + + LV+ I ++ +  VIG     SP+E   ++       F  +  + F  D+ L
Sbjct: 297 LNESMLQADLVNEIKVFIAPKVIGGALAKSPVEGLGIDDIKDAVVFKLINVEKFDDDILL 356

Query: 353 EY 354
           EY
Sbjct: 357 EY 358


>gi|307312211|ref|ZP_07591847.1| riboflavin biosynthesis protein RibD [Escherichia coli W]
 gi|306907713|gb|EFN38215.1| riboflavin biosynthesis protein RibD [Escherichia coli W]
 gi|315059691|gb|ADT74018.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli W]
 gi|323379743|gb|ADX52011.1| riboflavin biosynthesis protein RibD [Escherichia coli KO11]
 gi|324116898|gb|EGC10811.1| riboflavin biosynthesis protein RibD [Escherichia coli E1167]
          Length = 367

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP LT R + L E +           P+RI++D   ++  + 
Sbjct: 183 QRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVLPEH 242

Query: 235 KIIK----TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++    T         +E  + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWFARTQEDSSEWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|302189350|ref|ZP_07266023.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           syringae 642]
          Length = 378

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/345 (37%), Positives = 183/345 (53%), Gaps = 33/345 (9%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D  +M+ A+  +R  +  T  NP V C+IV++G ++G G  A  G PHAEV AL +A
Sbjct: 6   AALDVHYMARAIELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQA 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPCSH GR+PPCA  +IE G+ RVV  + DP+  VSGRGL  L   G
Sbjct: 66  GELARGATAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNAG 125

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++ESE +     +L R      ++ +K+A+S D    MA   S  ITG  +++ 
Sbjct: 126 IGVQCGVLESESRALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSA 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSL 232
           V  LRAQS  +L G  TVLAD   LT R + L             +P+R+++D   ++ L
Sbjct: 186 VQRLRAQSSVVLSGADTVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLRVPL 245

Query: 233 DSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
           D+   +       ++VT           E    +LALA    ++        DL++L+  
Sbjct: 246 DAPFFQA---GSALVVTCAAASARGRYQEEGHEMLALADSAGHV--------DLRRLMGE 294

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           L  RGV  +LVE G  +A +F    LVD   L+ +   +G    P
Sbjct: 295 LAARGVNEVLVEAGPRLAGAFARLGLVDEFQLFIAGKFLGSSARP 339


>gi|297580914|ref|ZP_06942839.1| riboflavin biosynthesis protein RibD [Vibrio cholerae RC385]
 gi|297534740|gb|EFH73576.1| riboflavin biosynthesis protein RibD [Vibrio cholerae RC385]
          Length = 367

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 181/339 (53%), Gaps = 27/339 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +AGE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+G+G+Q L
Sbjct: 61  MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120

Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI V+  ++E++ +     +L R      ++ LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R + L               P+R+ILD  
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGR- 285
            +L             P + + +   PVL +A     + I     + DL++LL  L  + 
Sbjct: 241 HQLH------------PELALYQTPSPVLRVASENAELCISAEHGKLDLRELLAQLAQQH 288

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            V  L VE G+ +A S I  +LVD IILY +  ++G  G
Sbjct: 289 NVNQLWVEAGSQLAKSLIEQKLVDEIILYLAPKLMGSDG 327


>gi|331661791|ref|ZP_08362714.1| riboflavin biosynthesis protein RibD [Escherichia coli TA143]
 gi|331060213|gb|EGI32177.1| riboflavin biosynthesis protein RibD [Escherichia coli TA143]
          Length = 367

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    M    S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMESGESQWITSPQARLDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++           E+     + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|251792829|ref|YP_003007555.1| riboflavin biosynthesis protein RibD [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534222|gb|ACS97468.1| riboflavin biosynthesis protein RibD [Aggregatibacter aphrophilus
           NJ8700]
          Length = 374

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 121/329 (36%), Positives = 182/329 (55%), Gaps = 15/329 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DA FM  AL  ++      + NP+V C++VK+G +IG+G  A  G PHAEV AL EAGE 
Sbjct: 9   DAEFMQLALDLAKQGEFTATPNPAVGCVLVKNGQIIGKGFHAKAGEPHAEVMALREAGEN 68

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPC+HYGR+PPCA+ +++ G+R V+  + DP+  V+G+GL  L+  GI  
Sbjct: 69  ARGATAYVTLEPCAHYGRTPPCAKGLVDAGVRIVIAAMCDPNPLVAGKGLGILADAGIES 128

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +++   +     +L R    R  + LK+A+S D    MA   S  ITG  ++  V  
Sbjct: 129 AVGLLKENAEELNKGFLKRMRTGRPFVQLKLAMSIDGKTAMANGESKWITGAQARADVQQ 188

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234
            RA++ AIL    TVLAD+P L  R   L         ++H   P+R+ILD   K+  D 
Sbjct: 189 YRAKASAILSTSQTVLADNPSLNVRWAELPQEVQSRYAEQHLRQPVRVILDSAHKVRSDF 248

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTSLLVE 293
            +  T   +PV +  ++   +       + + +I       L+ L+T L  R + +L VE
Sbjct: 249 NLFLTD--SPVWLAGKDKFQLNGFPASTEYLQLIPNQGESHLQTLMTELGRRQINTLWVE 306

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGE 322
            GA +A + I   LVD +I+Y +  ++G+
Sbjct: 307 AGATLAGALIAENLVDELIIYMAPKLLGD 335


>gi|238755138|ref|ZP_04616485.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia ruckeri
           ATCC 29473]
 gi|238706698|gb|EEP99068.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia ruckeri
           ATCC 29473]
          Length = 369

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/332 (38%), Positives = 178/332 (53%), Gaps = 22/332 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     TS NP+V C+IV+DG ++G G     G PHAEV AL  AG+ 
Sbjct: 4   DEIYMARAFELARLGRFTTSPNPNVGCVIVRDGKIVGEGYHLRAGEPHAEVHALRMAGDA 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPCA  ++  GIRRVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 64  ARGATAYVTLEPCSHHGRTPPCADALVAAGIRRVVTAMQDPNPQVAGRGLYQLKQAGITV 123

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 124 EHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMATSLDGRTAMASGESKWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP L  R   L   +           P RIILD   +++   
Sbjct: 184 FRAQSSAILSTSATVLADDPSLIVRWTELDADTQRIYPELALRQPTRIILDSQNRVTPAH 243

Query: 235 KIIKTA---LLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           ++I+      LA V    ++  D V  L   +      Y +  DL  LL  L  R + S+
Sbjct: 244 QVIRQPGDCWLARVDADQQHWPDNVDQLLLPR------YGNGVDLVLLLMQLGKRQINSV 297

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
            VE G  +A + + + +VD +ILY +  ++G+
Sbjct: 298 WVEAGPQLAGALLQAGVVDELILYVAPKLLGD 329


>gi|315646375|ref|ZP_07899493.1| riboflavin biosynthesis protein RibD [Paenibacillus vortex V453]
 gi|315278018|gb|EFU41338.1| riboflavin biosynthesis protein RibD [Paenibacillus vortex V453]
          Length = 366

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 122/338 (36%), Positives = 183/338 (54%), Gaps = 10/338 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +MS AL  +    G T  NP V C+IVK+G + G G     G PHAE+ AL  AG +
Sbjct: 6   DEFYMSLALDLAERAQGQTGINPVVGCVIVKNGALAGVGTHLERGTPHAEIHALNMAGTK 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A G+T YVTLEPCSHYG +PPC++ +I  G++RVVV  +DP+  V+G+G+Q L   GI +
Sbjct: 66  AAGSTVYVTLEPCSHYGATPPCSERLIAEGVKRVVVACEDPNPLVAGKGIQMLRAAGIEV 125

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++         A++      +  +TLK A + D  I      S  I+   S+  VH 
Sbjct: 126 VTGILRERALRLNEAFIKFITTGQPFVTLKTASTLDGKIASKTGDSKWISSEESRELVHT 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR +   I+VG+ TV+AD+P LT RL+    H P+RII+D   ++ LDS ++        
Sbjct: 186 LRHRHQGIMVGVSTVIADNPSLTTRLSVGGLH-PVRIIVDSSLRMPLDSHVVSDGTAPTW 244

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           I+ TE  D        ++ I +I C      DLK  +  L   G++S+L+EGG  +  + 
Sbjct: 245 ILTTEQADEGKRTLLEERGIQVIPCGEGPRVDLKAAIAKLGQMGISSILLEGGGTLNGAM 304

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKN 337
           +  +LVD +I + +  +I  GG  +P   +  GY + N
Sbjct: 305 LEQKLVDRLIQFIAPKII--GGYDAPGNFMFSGYEQMN 340


>gi|218781151|ref|YP_002432469.1| riboflavin biosynthesis protein RibD [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762535|gb|ACL05001.1| riboflavin biosynthesis protein RibD [Desulfatibacillum
           alkenivorans AK-01]
          Length = 372

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/329 (36%), Positives = 179/329 (54%), Gaps = 12/329 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M  AL  +    G TS NP V  +IVKDG VIG+G     G PHAE+ ALEEAG +
Sbjct: 5   DTQYMRQALALAEKGTGNTSPNPMVGAVIVKDGKVIGQGWHKKAGGPHAEIFALEEAGAD 64

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YVTLEPC+H+G++PPC+  +++ GI +V+  + DP+ +  G GL++L + G+  
Sbjct: 65  AKGATMYVTLEPCNHHGKTPPCSHAVLKAGIAKVIAAIKDPNPKAQG-GLKYLQENGVET 123

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              + E+E +     ++      R  +  K A + D  I      S  ITG  S+  VH 
Sbjct: 124 QWGVCEAEARKQNEFFIKHVTTGRPFVVCKCAATLDGRIATRIGDSKWITGEESRAYVHK 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +R   DAILVGI TV  DDP LT RL   Q + P+R+ILD    +   +K+++    +  
Sbjct: 184 MRHAMDAILVGINTVRMDDPSLTARLEDGQGNDPLRVILDSRLSMDPSAKMLRQDSDSGT 243

Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRDLKKLLTI------LVGRGVTSLLVEGGAAV 298
           +I      P V   A  K    I+  +  ++   L +      L  RG+ SLL+EGG  V
Sbjct: 244 LIFCGPQAPEVKRDALEKAGAEIV--EAPEMSGFLNLDFICRNLGERGLNSLLIEGGGHV 301

Query: 299 AHSFINSRLVDSI-ILYRSQIVIGEGGIP 326
             S + S +VD + + Y  +I+ G+ G+P
Sbjct: 302 HSSALKSGVVDKVCLFYAPKILCGDDGVP 330


>gi|117619328|ref|YP_857822.1| riboflavin biosynthesis protein RibD [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560735|gb|ABK37683.1| riboflavin biosynthesis protein RibD [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 369

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/333 (35%), Positives = 181/333 (54%), Gaps = 15/333 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D ++MS AL  +R     T+ NP V  ++VK G+V+G G     G PHAEV AL  A
Sbjct: 3   SQDDYQWMSRALELARRGRYTTAPNPCVGAVLVKAGVVVGEGWHQRAGEPHAEVYALHAA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G+ ARGATAYVTLEPCSH+GR+PPCA+ +I+ G+ RVV  + DP+ +V GRGL+ LS+ G
Sbjct: 63  GDNARGATAYVTLEPCSHHGRTPPCAEALIKAGVTRVVAAMVDPNPQVGGRGLRMLSEAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  D  ++ SE +     +  R       +T+K+  S D    MA   S  IT   ++  
Sbjct: 123 IKTDFGLLASEAEALNPGFFKRMRTAFPQVTVKLGASLDGRTAMASGESQWITSPEARRD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLS 231
           V  LRA+ DA+L    TVLAD+  LT R + L               P+R+I+D   +L+
Sbjct: 183 VQRLRARHDAVLSSAETVLADNASLTVRWDELPASVKASYPKETLRQPLRVIVDSQNRLT 242

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
            D  ++++    PV++             ++  + ++     DL  L  +L  + V S+L
Sbjct: 243 PDLPLLQSE--GPVLLARHKASGEWPAWVQQLEVPLLDGKL-DLVSLFMLLAKQNVNSVL 299

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           VE G  +  + ++  LVD ++LY++  ++G+ G
Sbjct: 300 VEAGPRLCGALLDKGLVDDLVLYQAPKLMGDEG 332


>gi|296387387|ref|ZP_06876886.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
           PAb1]
          Length = 373

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/346 (35%), Positives = 180/346 (52%), Gaps = 33/346 (9%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ D  +M+ AL  +R  +  T  NP V C++VKDG V+G G     G PHAEV AL +
Sbjct: 1   MNAADPLYMARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q 
Sbjct: 61  AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V   ++E+E +     ++ R       + +K+A+S D    MA   S  ITG  +++
Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPAARS 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRA+S  +L G  T+LADD  L  R + L              P+R+++D   ++ 
Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRVP 240

Query: 232 LDSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
           L+S   +     P ++ T           +    +LAL   + ++        DL KLL 
Sbjct: 241 LESAFYQA---GPALVATCAAASARERFQDAGHELLALPSAEGHV--------DLHKLLV 289

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            L  RG   +LVE G  +A +F    LVD   L+ +   +G    P
Sbjct: 290 ELAARGANEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARP 335


>gi|291613122|ref|YP_003523279.1| riboflavin biosynthesis protein RibD [Sideroxydans lithotrophicus
           ES-1]
 gi|291583234|gb|ADE10892.1| riboflavin biosynthesis protein RibD [Sideroxydans lithotrophicus
           ES-1]
          Length = 363

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 118/323 (36%), Positives = 185/323 (57%), Gaps = 5/323 (1%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ D+++M+ ALR +   +  TS NP V C++VK   V+G G     G PHAEV AL  
Sbjct: 1   MNAADSQWMALALRLAEQGLYTTSPNPRVGCVLVKQHEVVGTGWHERAGEPHAEVHALRA 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ A+GATAYVTLEPCSH+GR+PPCA  ++  GI+RVV  + DP+ +V+G+G+  L   
Sbjct: 61  AGKSAKGATAYVTLEPCSHHGRTPPCADALVAAGIKRVVAAMQDPNPQVAGQGIARLRAA 120

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V+  +ME   +     +++R       +  K+A S D    +A   S  ITG  ++ 
Sbjct: 121 GIGVECGLMEVAARELNIGFVSRMTRGIPWVRSKVAASLDGRTALANGSSKWITGEAARC 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V   RA+S A+L GIGTVLADDP+L  R        P+R++LD   ++S  ++I++   
Sbjct: 181 DVQHWRARSCAVLTGIGTVLADDPQLNVR-EMPAARQPLRVVLDSELRISSQAEILRNG- 238

Query: 242 LAPVIIVTENDDPVLALAFRKKN-INIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVA 299
            A V      D  + AL+ R    + +   D + DL  ++  L  RG+  +LVE G  + 
Sbjct: 239 HALVYTACTVDAKLKALSARGAEVVTLAGLDGKVDLFAVMRDLARRGINEVLVEAGRELN 298

Query: 300 HSFINSRLVDSIILYRSQIVIGE 322
            + + + LVD ++LY +  ++G+
Sbjct: 299 GALLKAGLVDEMVLYLAPQLLGD 321


>gi|293408560|ref|ZP_06652399.1| riboflavin biosynthesis protein RibD [Escherichia coli B354]
 gi|291471738|gb|EFF14221.1| riboflavin biosynthesis protein RibD [Escherichia coli B354]
          Length = 367

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 133/372 (35%), Positives = 194/372 (52%), Gaps = 30/372 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    M    S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMESGESQWITSPQARLDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++           E+     + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEE--GYLEKNFMCVRRD 344
            VE G  +A + + + LVD +I+Y +  ++G       I   LE+    L+  F  +R  
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCILPGLEKLADALQFKFKEIR-- 354

Query: 345 YFGSDVCLEYIG 356
           + G DVCL  +G
Sbjct: 355 HVGPDVCLHLVG 366


>gi|192359452|ref|YP_001983157.1| riboflavin biosynthesis protein RibD [Cellvibrio japonicus Ueda107]
 gi|190685617|gb|ACE83295.1| riboflavin biosynthesis protein RibD [Cellvibrio japonicus Ueda107]
          Length = 383

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 123/346 (35%), Positives = 187/346 (54%), Gaps = 20/346 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M ++  D RFM+ ALR +   +  T  NP V C++VK+  +I  G     G  HAEV AL
Sbjct: 1   MALTRDDHRFMARALRLAERGLYTTMPNPRVGCVLVKNQQIIAEGWHVRAGEGHAEVNAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             A E+ARGATAYVTLEPC+H G++ PC+Q +I+ G+ RVV  ++DP+  VSGRGL+ L+
Sbjct: 61  RIAAEQARGATAYVTLEPCNHTGKTGPCSQALIDAGVARVVYAMEDPNPLVSGRGLERLA 120

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI VD  + E + +     ++TR   KR  +  K+A+S D    MA   S  IT   +
Sbjct: 121 AAGIEVDGPLFEEQARALNPGFITRMERKRPLLRCKMAMSLDGRTAMASGESKWITSPKA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL--------QEHSPMRIILDPHFKLS 231
           +  V  LRA S AI+ GIG+VL D+ +LT R   L            P+R+ILD   +L 
Sbjct: 181 RADVQRLRAASCAIVTGIGSVLQDNSQLTLRARELGLPRAEDIARRQPLRVILDSRLQLP 240

Query: 232 LDSKIIKTA-------LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLT 280
            D+ I++TA       +  P+++V         L     ++ ++    R    DL+ L+ 
Sbjct: 241 RDALIMQTADPNSPELVPGPILLVHNGTADGAQLDGWPAHVELLALPGRDGRIDLEALVR 300

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            L  R    +L+E GA +A +F+   L+D +++Y +  ++G    P
Sbjct: 301 ELAQRQCNEVLIEAGATLAGAFLRRGLLDEVVVYMAPKLLGSQARP 346


>gi|319897565|ref|YP_004135762.1| riboflavin biosynthesis protein ribd [Haemophilus influenzae F3031]
 gi|317433071|emb|CBY81445.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae F3031]
          Length = 372

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 121/333 (36%), Positives = 183/333 (54%), Gaps = 16/333 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           SS D  FM  AL  +      T+ NPSV C++VK+G ++G G     G PHAE  AL +A
Sbjct: 5   SSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+GATAYVTLEPC+HYGR+ PCA  +IE G+ +V+  + DP+ +V+G+GL+ LS  G
Sbjct: 65  GENAKGATAYVTLEPCAHYGRTSPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAG 124

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I     ++  + +     +L R  +    + LK+A+S D    MA   S  IT   +++ 
Sbjct: 125 IESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITSPDARSD 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231
           V  +RA+S A+L    TV+ADDP L  R +   E+            P+R+ILD   ++ 
Sbjct: 185 VQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHRIQ 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
              K+  T   +PV +V+   +P     F      II      LK+L+  L  R + +L 
Sbjct: 245 PTHKLFLTH--SPVWLVSS--EPRDLTGFPDFCEQIILPKENLLKELMRELGKRQINTLW 300

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           VE GA +A S I+++LVD +I+Y +  ++G+  
Sbjct: 301 VEAGANLAGSLIDAKLVDELIIYVAPKLLGDNA 333


>gi|197119395|ref|YP_002139822.1| bifunctional
           2,
           5-diamino-6-(5'-phosphoribosylamino)-4-(3H)-pyrimidinone
           deaminase/5-amino-6-(5'-phosphoribosylamino)uracil
           reductase [Geobacter bemidjiensis Bem]
 gi|197088755|gb|ACH40026.1| 2,5-diamino-6-(5'-phosphoribosylamino)-4-(3H)-pyrimidinone
           deaminase and 5-amino-6-(5'-phosphoribosylamino)uracil
           reductase [Geobacter bemidjiensis Bem]
          Length = 369

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 122/322 (37%), Positives = 192/322 (59%), Gaps = 7/322 (2%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           + M  AL  +R  +G T+ NP+V C+IV++G V+G G     G PHAEV AL+ AG++A 
Sbjct: 7   KMMRLALAEARKGIGKTAPNPAVGCVIVRNGEVVGTGWHKKAGTPHAEVHALKAAGDKAA 66

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127
           GA AYVTLEPCSH+G++PPCA+ +IE  + RV V + DP+  VSGRG+Q L   GI V+ 
Sbjct: 67  GADAYVTLEPCSHFGKTPPCAKALIEARVARVFVAMVDPNPLVSGRGIQMLKDAGIAVEV 126

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            +++ E +     ++     K  ++ LK A++ D     A   S  +T   ++ +VH LR
Sbjct: 127 GLLKEESRELNLPFIKWIQTKLPYVVLKSALTLDGKSATASGDSKWVTSDRARREVHRLR 186

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DAI+VG+GTV+ DDP LTCR+ G ++  P+R+I+D   ++ L + I+     A  +I
Sbjct: 187 GRLDAIMVGVGTVVKDDPLLTCRVPGGKD--PLRVIVDSTLRIPLHAAILGVKSKAETVI 244

Query: 248 VTENDDPVLALAFRKKNINIIYC---DCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            T + D     A +   + I+ C   D R DL  L   L  RGV S+L+EGG+ +A + +
Sbjct: 245 ATCSCDHAKMEALKAHGVEILTCCESDGRVDLADLFEKLGARGVQSVLLEGGSHLAGAAL 304

Query: 304 NSRLVDSIILYRSQIVIGEGGI 325
            + L+D  +++ +  ++G  G+
Sbjct: 305 RAGLIDKCMIFLAPKLVGGAGM 326


>gi|262190240|ref|ZP_06048514.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae CT 5369-93]
 gi|262033885|gb|EEY52351.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae CT 5369-93]
          Length = 365

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 120/335 (35%), Positives = 178/335 (53%), Gaps = 26/335 (7%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A+ +A
Sbjct: 3   TSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+G+G+Q L   G
Sbjct: 63  GELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V+  ++E++ +     +L R       + LK+A S D    +A   S  IT   ++  
Sbjct: 123 IEVEVGLLEADARALNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPAARKD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLS 231
           V   RAQ+ AIL    TVLAD+  L  R + L               P+R+ILD   +L 
Sbjct: 183 VQRFRAQASAILSTSQTVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQHQLH 242

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGR-GVTS 289
                       P + + +   PVL +A     + I   + + DL++LL  L  +  V  
Sbjct: 243 ------------PELALYQTPSPVLRVASENAELCISAENGKLDLRELLAQLAQQHNVNQ 290

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           L VE G+ +A S I  +LVD IILY +  ++G  G
Sbjct: 291 LWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDG 325


>gi|229092353|ref|ZP_04223525.1| Riboflavin biosynthesis protein [Bacillus cereus Rock3-42]
 gi|228691055|gb|EEL44822.1| Riboflavin biosynthesis protein [Bacillus cereus Rock3-42]
          Length = 350

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 122/338 (36%), Positives = 183/338 (54%), Gaps = 18/338 (5%)

Query: 23  GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
           G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARG T YVTLEPCSH+
Sbjct: 3   GQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARGGTIYVTLEPCSHH 62

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAY 141
           GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  + E E K     +
Sbjct: 63  GRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEVF 122

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
               + KR  +T+K  V+ D  I      S  IT   ++ +VH +R ++ AILVG  TV 
Sbjct: 123 NKYIMTKRPFVTIKSGVTLDGKIATFLSDSKWITSTEARQEVHQIRNENAAILVGANTVQ 182

Query: 202 ADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
            D+P LT R+ NG    +P+R+ILD   ++ +++ ++        I  T N       A 
Sbjct: 183 KDNPSLTTRIPNG---RNPIRVILDSTLRIPMEANVVTDEEAPTWIFTTSNHAAEKRKAL 239

Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
               + +         +L ++L +L  +GV+SLL+EGG  V  SFI + L+D +ILY + 
Sbjct: 240 ESAGVKVFVISGEKHINLYEMLDVLGQKGVSSLLIEGGGEVNASFIENELMDKLILYFAP 299

Query: 318 IVIGEGGIPSPLEEGYLEK----------NFMCVRRDY 345
            +IG    PS +E   + K          +F  V +DY
Sbjct: 300 KIIGGRLAPSFVEGTGITKMQDAIEFKDISFTQVGKDY 337


>gi|262274779|ref|ZP_06052590.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Grimontia hollisae CIP 101886]
 gi|262221342|gb|EEY72656.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Grimontia hollisae CIP 101886]
          Length = 373

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 121/335 (36%), Positives = 186/335 (55%), Gaps = 24/335 (7%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S FD++ M  A+  ++  +  T+ NP+V C+I +   ++G G     G PHAEV AL  A
Sbjct: 3   SIFDSQMMLRAIELAKRGIYTTAPNPNVGCVITQGDDIVGEGFHFRAGEPHAEVYALRAA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE+A GATAYVTLEPCSH+GR+PPCA  +I  G+ RVV  + DP+ +V+GRG+Q +   G
Sbjct: 63  GEKACGATAYVTLEPCSHHGRTPPCADALIAAGVSRVVCAMVDPNPKVAGRGIQRMRDAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I VD  +M+++ +     ++         + LK+A S D    +A   S  ITG  ++  
Sbjct: 123 IQVDVGLMQAQAEALNPGFIKVMKTGLPFVQLKLASSIDGRTALANGQSQWITGAEARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLS 231
           V + RAQ+ AIL    TVL D+P L  R   L E             P+R+ILD H K+S
Sbjct: 183 VQVFRAQAGAILSTSQTVLDDNPSLNVRWAQLPETVKSVYQQDDVRQPVRVILDTHRKVS 242

Query: 232 LDSKIIKTALLAPVIIVTENDD-PVLALAFRKKNINIIYCDCRD----LKKLLTILVGRG 286
             + +   +L   +IIVT  DD P +      +++ ++  + +D    L   L  L  +G
Sbjct: 243 DSATLF--SLDGDIIIVTAKDDKPSV-----NESVTVLTVEQQDGHLNLNSTLRALAAKG 295

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           +  + VE GA +A S +N+ LVD +I+Y++  ++G
Sbjct: 296 IHHIWVEAGATLAGSLLNAGLVDEVIVYQAPKLMG 330


>gi|312171548|emb|CBX79806.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Erwinia amylovora ATCC BAA-2158]
          Length = 367

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 123/334 (36%), Positives = 178/334 (53%), Gaps = 22/334 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL  +R     T+ NP+V C++V+D  ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEAYMARALELARRGRFTTTPNPNVGCVLVRDDQIVGEGYHMRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           +RGATAYVTLEPCSH+GR+PPC + +I  G++RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  SRGATAYVTLEPCSHHGRTPPCCEALIAAGVKRVVTAMQDPNPQVAGRGLYRLQQAGIEV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              MM  E +     +L R       + LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGMMMPEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPEARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLAD+P LT R + L   S           P+R+I+D   +++   
Sbjct: 183 LRAQSSAILSTSATVLADNPALTVRHDELDRASLADYPVDLLRQPVRVIVDSQNRVTPRH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           ++I       +     +D    D V  L   +      Y D  DL  +L +L  + + SL
Sbjct: 243 RLISQPGETWLARTAGDDLDWPDNVSQLTVPR------YQDRLDLVAMLMLLGRKQINSL 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            VE GA  A + + + +VD +I+Y +  ++G+ G
Sbjct: 297 WVEAGAQFAGALLQAGVVDELIVYLAPKLLGDAG 330


>gi|82542902|ref|YP_406849.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Shigella boydii Sb227]
 gi|81244313|gb|ABB65021.1| bifunctional pyrimidine deaminase/reductase in pathway of
           riboflavin synthesis [Shigella boydii Sb227]
 gi|320186043|gb|EFW60788.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-5-phosphoribosylaminouracil
           reductase [Shigella flexneri CDC 796-83]
 gi|332098511|gb|EGJ03477.1| riboflavin biosynthesis protein RibD [Shigella boydii 3594-74]
          Length = 367

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 190/371 (51%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
            I++           E+     + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 HIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
             E G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WGEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|262170762|ref|ZP_06038440.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio mimicus MB-451]
 gi|261891838|gb|EEY37824.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio mimicus MB-451]
          Length = 367

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 121/339 (35%), Positives = 182/339 (53%), Gaps = 27/339 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +AGE   GATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+GRG+Q L
Sbjct: 61  MRQAGELTHGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGRGVQML 120

Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI V+  ++E++ +     +L R      ++ LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R + L +             P+R+ILD  
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPQSGQAQYAETDLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGR- 285
            +L             P + + +   PVL +A    ++ I   + + DL +LL  L  + 
Sbjct: 241 HQLH------------PELALYQTPSPVLRVASENADLCISAENGKLDLHELLAQLAQQH 288

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            V  + VE G+ +A S I  +LVD IILY +  ++G  G
Sbjct: 289 NVNQVWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDG 327


>gi|157156281|ref|YP_001461596.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli E24377A]
 gi|157078311|gb|ABV18019.1| riboflavin biosynthesis protein RibD [Escherichia coli E24377A]
          Length = 367

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP LT R + L E +           P+RI++D   ++  + 
Sbjct: 183 QRAQSYAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVLPEH 242

Query: 235 KIIK----TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++    T         +E  + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWFARTQEDSSEWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|87121732|ref|ZP_01077619.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
           C-terminal [Marinomonas sp. MED121]
 gi|86162983|gb|EAQ64261.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
           C-terminal [Marinomonas sp. MED121]
          Length = 383

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 119/359 (33%), Positives = 186/359 (51%), Gaps = 16/359 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M+ A++ +R  +  T  NP V C++V+D  ++  G     G  HAEV A+  A  + +G
Sbjct: 12  WMAQAIQLARKGLYTTHPNPRVGCVLVRDNSLVAEGYHKVAGEGHAEVNAIANANGDTQG 71

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
            TAYVTLEPCSH G++ PCA+ +I+  + R+V  + DP+  V+GRGL  L + GI ++  
Sbjct: 72  CTAYVTLEPCSHQGKTGPCAKALIKANVSRLVYGMQDPNPDVAGRGLAMLKEAGIEVIGP 131

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +ME+E       ++ R  E   ++ LK+A+S D    M    S  ITG  ++  V  LRA
Sbjct: 132 VMETEALALNPGFIKRMTEGLPYVRLKLAMSLDGRTAMESGESQWITGPDARLDVQKLRA 191

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQE-------HSPMRIILDPHFKLSLDSKIIKTAL 241
           QSDAI+ GIG+V+ADDP +T R++             P RII+D    +  +SKI+    
Sbjct: 192 QSDAIVTGIGSVMADDPSMTVRIDSDNHPVKSKSVRQPKRIIMDTALSIPPESKILYPCN 251

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296
              +  + E  +     A   K +N+ Y         DL   +  L  +G+  +LVE GA
Sbjct: 252 QVQIFCLEELAEAEHHKALTDKGVNVTYTQAAEEGGIDLVVSMETLADQGINEVLVETGA 311

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +A +F+   LVD ++LY +  ++G    P    PL+      +F  V     G D+ L
Sbjct: 312 VLAGAFLQEGLVDEVVLYMAPKLLGSNARPLMQLPLDSMAQAVDFEMVNLSQLGKDIKL 370


>gi|15599251|ref|NP_252745.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
           PAO1]
 gi|9950253|gb|AAG07443.1|AE004822_3 riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
           PAO1]
          Length = 373

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 123/346 (35%), Positives = 180/346 (52%), Gaps = 33/346 (9%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ D  +M+ AL  +R  +  T  NP V C++VKDG V+G G     G PHAEV AL +
Sbjct: 1   MNAADPLYMARALELARQGLYSTQPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q 
Sbjct: 61  AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V   ++E+E +     ++ R       + +K+A+S D    MA   S  ITG  +++
Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARS 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRA+S  +L G  T+LADD  L  R + L              P+R+++D   ++ 
Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRVP 240

Query: 232 LDSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
           L+S   +     P ++ T           +    +LAL   + ++        DL KLL 
Sbjct: 241 LESAFYQA---GPALVATCAAASARERFQDAGHELLALPSAEGHV--------DLHKLLL 289

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            L  RG   +LVE G  +A +F    LVD   L+ +   +G    P
Sbjct: 290 ELAARGANEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARP 335


>gi|313891665|ref|ZP_07825272.1| riboflavin biosynthesis protein RibD [Dialister microaerophilus
           UPII 345-E]
 gi|313119943|gb|EFR43128.1| riboflavin biosynthesis protein RibD [Dialister microaerophilus
           UPII 345-E]
          Length = 378

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 118/338 (34%), Positives = 178/338 (52%), Gaps = 18/338 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++MS AL  ++     T TNP V  ++VK+G VIG G     G  HAEV A +   E 
Sbjct: 6   DEKWMSHALDLAKHGYWYTETNPLVGAVLVKNGKVIGEGWHKKYGDVHAEVNAFKNCKEN 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
              AT YVTLEPC HYG++PPC   +++  ++RVV+ + DP+  VSG+ ++ L + GI +
Sbjct: 66  TEHATLYVTLEPCCHYGKTPPCLNLVLQKKVKRVVIAMKDPNPLVSGKSIKILKENGIQV 125

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  ++E+E       ++    E +  +  K A+S D         S  I+   S+N VH 
Sbjct: 126 IVGVLENEAVKLNEIFIKYITEHKPFVLYKAAMSIDGKTSCYTGDSKWISSETSRNDVHY 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL------NGLQE-----HSPMRIILDPHFKLSLDS 234
           LR +  AI+VG GT+  D+P LT R       NG +E      +P+RII+D      +DS
Sbjct: 186 LRNKYKAIMVGAGTIKKDNPSLTSRFYIINKKNGEKELMKNQRNPIRIIVDGKLSSPIDS 245

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTS 289
           K+ +      V++ T   D      F+ K I +IY +       DL K L IL  +G+ S
Sbjct: 246 KVFQDG-GKTVVLTTSYADKKNVEKFKNKGIELIYSNLGNDGKVDLNKSLEILARKGINS 304

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           +L+EGGA  A    N ++VD + +Y + I+IG    PS
Sbjct: 305 ILLEGGAETAAEAFNQKIVDKLRIYIAPIIIGGKTSPS 342


>gi|284006397|emb|CBA71633.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Arsenophonus nasoniae]
          Length = 369

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 128/336 (38%), Positives = 185/336 (55%), Gaps = 18/336 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++FD +FMS AL  ++     TS NP+V C+IV+DG V+G G     G  HAE+ AL+ 
Sbjct: 1   MTTFDKQFMSRALSLAKQGRFTTSPNPNVGCVIVRDGEVVGEGFHCKTGEAHAEIYALQM 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE+A GATAYVTLEPCSHYG++PPCA  +I  GI+RVVV + DP+ +V+GRGL  L Q 
Sbjct: 61  AGEKANGATAYVTLEPCSHYGKTPPCADALISAGIQRVVVAMQDPNPQVAGRGLLKLQQA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI ++  ++  E +     +L R      ++ LK+A S D    +A   S  IT   ++ 
Sbjct: 121 GIEVIHGLLIDEAEQLNQGFLKRMRTGFPYVQLKLAASLDGRTALASGESKWITSPAARQ 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL--------NGLQEHS---PMRIILDPHFKL 230
            V   RAQ+ AIL    TVLAD+P L  R         N   E S   P+RI+LD + ++
Sbjct: 181 DVQSFRAQASAILTTSATVLADNPALNVRWKDFAPELQNIYPEESLRQPIRIVLDRNNQV 240

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRK-KNINI-IYCDCRDLKKLLTILVGRGVT 288
             +  + K+A    +I      +P+    F   K I I  Y    DL  L+  L  R + 
Sbjct: 241 KPEHFVTKSAGECWLI----RSNPIAQNWFGDVKQITIPTYGKGIDLVLLMMQLAKRNIN 296

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           S+ VE G  +A + +   LVD +I+Y +  ++GE  
Sbjct: 297 SIWVESGPTLAGTLLTLGLVDELIVYVAPKILGESA 332


>gi|116052093|ref|YP_789063.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115587314|gb|ABJ13329.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 373

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 123/346 (35%), Positives = 180/346 (52%), Gaps = 33/346 (9%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ D  +M+ AL  +R  +  T  NP V C++VKDG V+G G     G PHAEV AL +
Sbjct: 1   MNAADPLYMARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q 
Sbjct: 61  AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V   ++E+E +     ++ R       + +K+A+S D    MA   S  ITG  +++
Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARS 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRA+S  +L G  T+LADD  L  R + L              P+R+++D   ++ 
Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRVP 240

Query: 232 LDSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
           L+S   +     P ++ T           +    +LAL   + ++        DL KLL 
Sbjct: 241 LESAFYQA---GPALVATCAAASARERFQDAGHELLALPSAEGHV--------DLHKLLV 289

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            L  RG   +LVE G  +A +F    LVD   L+ +   +G    P
Sbjct: 290 ELAARGANEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARP 335


>gi|229061784|ref|ZP_04199117.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH603]
 gi|228717530|gb|EEL69194.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH603]
          Length = 379

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 114/324 (35%), Positives = 176/324 (54%), Gaps = 4/324 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++VKD  ++G G     G  HAEV AL  AGE 
Sbjct: 12  DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKDSNIVGMGAHMRAGEEHAEVHALHMAGER 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +IE  ++RVV+   D +  VSG G + L +  I +
Sbjct: 72  AKGATVYVTLEPCSHFGKTPPCCELLIEKEVQRVVIATLDCNPLVSGNGKRKLEEAAIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      K+  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEATLLNRYFFHYMKTKQPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TVL D+P LT R+    +H P+R+ILD H +    S +I   L    
Sbjct: 192 YRHIHDAILVGVNTVLTDNPHLTTRIPNGGKH-PIRVILDTHLRTPPSSHVITDGLTPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +     ++   NI +     +  +++ +L++L  + + SL VEGG  V  +F+
Sbjct: 251 IIVGKDVNKEKIASYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFVEGGQTVHANFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327
            +   + I+ Y S  +IG    P+
Sbjct: 311 KTNSFNEIVTYISPKLIGGKDAPT 334


>gi|119945176|ref|YP_942856.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
           and 5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Psychromonas ingrahamii 37]
 gi|119863780|gb|ABM03257.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Psychromonas ingrahamii 37]
          Length = 387

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 121/339 (35%), Positives = 182/339 (53%), Gaps = 23/339 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D  +M+ A+  ++     +S NP+V C+IV + I++G G     G  HAEV AL  A
Sbjct: 7   SDLDKYYMAHAILLAKKGRFTSSPNPNVGCVIVANNIIVGEGYHQKAGLGHAEVNALAIA 66

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            ++A GAT YVTLEPCSH+GR+PPCA  + + GI+RV++ + DP+ +V+G G++ L + G
Sbjct: 67  KDKAMGATCYVTLEPCSHFGRTPPCALALTKAGIKRVIIAMVDPNPKVAGDGIKILEKAG 126

Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I VD  ++++E       ++ R   K   +T+K+A S D    +    S  ITG  ++  
Sbjct: 127 IKVDLGLLKNEAMDLNRGFIKRMQVKEPRVTVKLASSLDGKTALKNGQSQWITGPAARCD 186

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-------------SPMRIILDPHFK 229
           V   RA   A+L G  TV+AD+P L  R   L+ H              P+RIILD H K
Sbjct: 187 VQYFRALQSAVLTGSATVIADNPSLNVRYESLKNHLDFDLTLRPAEIRQPIRIILDSHNK 246

Query: 230 LSLDSKIIKTALLAPVIIVT---ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTIL 282
           ++L  K+   +L   V++V+    +D P     F      +I  D      +LK LLT L
Sbjct: 247 ITLKEKLF--SLEGKVLLVSLLPRDDLPKNKNQFSADIEQLIGTDDGHGRINLKVLLTQL 304

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
               +  L VE GA +A  F N +LVD  ILY++  ++G
Sbjct: 305 SDYEINDLWVEAGATLAGEFFNHQLVDQFILYQAPKLMG 343


>gi|331676081|ref|ZP_08376793.1| riboflavin biosynthesis protein RibD [Escherichia coli H591]
 gi|331076139|gb|EGI47421.1| riboflavin biosynthesis protein RibD [Escherichia coli H591]
          Length = 367

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 QRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEH 242

Query: 235 KIIK----TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++    T         +E  + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWFARTQEDSSEWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++         +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLDSDARGLCTLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|107103570|ref|ZP_01367488.1| hypothetical protein PaerPA_01004640 [Pseudomonas aeruginosa PACS2]
 gi|218889663|ref|YP_002438527.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
           LESB58]
 gi|218769886|emb|CAW25647.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
           LESB58]
          Length = 373

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 123/346 (35%), Positives = 180/346 (52%), Gaps = 33/346 (9%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ D  +M+ AL  +R  +  T  NP V C++VKDG V+G G     G PHAEV AL +
Sbjct: 1   MNAADPLYMARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q 
Sbjct: 61  AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V   ++E+E +     ++ R       + +K+A+S D    MA   S  ITG  +++
Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARS 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRA+S  +L G  T+LADD  L  R + L              P+R+++D   ++ 
Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRVP 240

Query: 232 LDSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
           L+S   +     P ++ T           +    +LAL   + ++        DL KLL 
Sbjct: 241 LESAFYQA---GPALVATCAAASARERFQDAGHELLALPSAEGHV--------DLHKLLL 289

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            L  RG   +LVE G  +A +F    LVD   L+ +   +G    P
Sbjct: 290 ELAARGANEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARP 335


>gi|23097878|ref|NP_691344.1| riboflavin specific deaminase [Oceanobacillus iheyensis HTE831]
 gi|22776102|dbj|BAC12379.1| riboflavin specific deaminase
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase :
           5-amino-6-(5-phosphoribosylamino) uracil reductase)
           [Oceanobacillus iheyensis HTE831]
          Length = 367

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 122/360 (33%), Positives = 192/360 (53%), Gaps = 15/360 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++   G T  NP V  +IV    ++G G     G PHAE+ AL+ AGE 
Sbjct: 4   DKHYMKLAIENAKAMKGQTDPNPLVGAVIVNHNRIVGVGSHLKAGEPHAEIHALQMAGEN 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YVTLEPCSH GR+ PCA  ++E G+RRVV+   DP+  V+G G++ L   GI V
Sbjct: 64  AKGATIYVTLEPCSHQGRTGPCALALVEAGVRRVVIATLDPNPLVAGNGVKILEDAGIEV 123

Query: 127 DRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  +  +  I ++    + +  K+  IT+K A + D  +      S  IT   ++  VH 
Sbjct: 124 EVGVLEDESISMNEVFNKFITHKQPFITMKAASTLDGKVATKTNHSKWITSEAAREDVHH 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
           LR +  AILVGI T++ DDP LT R+ NG    +P+RI+LD   ++ LD++II+      
Sbjct: 184 LRNEHAAILVGIQTIIHDDPALTTRIPNG---RNPIRIVLDSSLRIPLDAQIIQDKRAPT 240

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           +I   E  D           + II    +   D++ ++  L  + ++SLL+EGG  +  S
Sbjct: 241 MIFTKEEVDQKKKDKLESVGVEIINTSGKEQTDIQDVVNHLGNQQISSLLLEGGGNIHAS 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356
           F+ + LVD ++LY +  + G    P+  E   +E+     + + ++ D  G D    +IG
Sbjct: 301 FLAAGLVDKVVLYMAPKLSGGKNAPTFFEGAGIEQMDDSIDLLNLKIDQIGPD--FRFIG 358


>gi|251771354|gb|EES51935.1| riboflavin biosynthesis protein RibD [Leptospirillum
           ferrodiazotrophum]
          Length = 397

 Score =  196 bits (498), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 141/382 (36%), Positives = 194/382 (50%), Gaps = 34/382 (8%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P    D R+M  AL  +       + NP V  ++V+DG V+G G     G  HAEV AL 
Sbjct: 5   PGEPADRRWMQRALVLAEKGRDTVAPNPMVGAVVVRDGKVVGEGYHREAGQEHAEVLALR 64

Query: 62  EAGEEARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            AG+ ARGAT YV LEPC H   R+PPC + I++ G+ RVVV + DP+ RV GRGL+ L+
Sbjct: 65  AAGDRARGATLYVNLEPCCHVEKRTPPCTEAIVQAGVARVVVAMRDPNPRVFGRGLERLA 124

Query: 121 QKGIIVDRMMESEGKIFLHAY--------LTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172
            +     R+  SEG     A+        L RQ   R ++TLK A+S D  I  +   S 
Sbjct: 125 GQ-----RLDVSEGLFAARAFEQNRGFSSLIRQ--GRPYVTLKGAMSLDGKIATSTGDSQ 177

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
            I+G  S    H LR   DAILVGI T + DDP LT RL G + H P R+ILD   +L  
Sbjct: 178 WISGSRSLAYAHRLRRDHDAILVGISTAMKDDPRLTNRLPGSRSHQPARVILDSTGRLPP 237

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN--IIYCDCR----DLKKLLTILVGRG 286
           DS++       PV +V     P  +L   +K+    ++  + R    DL+ LL +L   G
Sbjct: 238 DSRLFGEEGGGPVFLVAGPRAPERSLRQLEKSGARILVLPEVRTGEIDLRALLAVLAEEG 297

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG--------EGGIPSPLEEGYLEKNF 338
           + ++LVEGG+ V  SF+ + LVD I +  + ++IG         G  P  L        F
Sbjct: 298 LLTVLVEGGSRVNASFLAAGLVDRIRVVLAPLLIGGTDAIGWLGGASPPTLARARRLPGF 357

Query: 339 MCVRRDYFGSD--VCLEYIGKN 358
             +RR   G D  V  ++ G N
Sbjct: 358 SVIRR--LGDDLLVGADFWGPN 377


>gi|303252625|ref|ZP_07338788.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302648593|gb|EFL78786.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
          Length = 379

 Score =  196 bits (498), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 123/373 (32%), Positives = 202/373 (54%), Gaps = 24/373 (6%)

Query: 1   MPVSSF----DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAE 56
           +P +SF    D  +M  A+  ++  +G T+ NP V C+IVK+G ++  G     G  HAE
Sbjct: 8   LPSNSFKTMTDLDYMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAE 67

Query: 57  VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
             A+    E+  GATAYVTLEPC H+GR+PPC+  +IE GI++V +   DP+  V+GRG 
Sbjct: 68  RNAVLHCKEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGA 127

Query: 117 QWLSQKGI-IVDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS 171
             L Q G+ +V+ +++ E      IF H   T    KR ++ +K A++ D  I      S
Sbjct: 128 NQLRQAGVEVVEGLLKEECDALNPIFFHYIQT----KRPYVLMKYAMTADGKIATGSGES 183

Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231
             ITG  ++ +V   R Q  AI+VG+ TVLAD+P L  R+   ++  P+RI+ D   +  
Sbjct: 184 KWITGESARARVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQ--PVRIVCDSQLRTP 241

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGV 287
           LD ++++TA     +I T +DD      FR   ++++ C  R    DL+ LL  L    +
Sbjct: 242 LDCQLVQTAKEYRTVIATVSDDLQKIEQFRPLGVDVLVCKARNKRVDLQDLLQKLGEMQI 301

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR----- 342
            SLL+EGG+++  S + S +V+ +  Y +  ++G     +P+    +++    V+     
Sbjct: 302 DSLLLEGGSSLNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKS 361

Query: 343 RDYFGSDVCLEYI 355
            +  G D+ L+Y+
Sbjct: 362 TELIGEDILLDYV 374


>gi|291527733|emb|CBK93319.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Eubacterium rectale M104/1]
          Length = 388

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 127/358 (35%), Positives = 188/358 (52%), Gaps = 40/358 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M  A+  ++  +G TS NP V  +IVKDG +IG G     G  HAE  AL+   E 
Sbjct: 3   DEQYMRRAIELAKRGMGYTSPNPMVGAVIVKDGRIIGEGWHERYGELHAERNALKHCKES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            +GA  YVTLEPC H+G+ PPC + +IE GI+RV V  DDP+  V+G G++ L + GI +
Sbjct: 63  PQGAEMYVTLEPCCHHGKQPPCVEAVIEAGIKRVYVGSDDPNPLVAGGGIKILKEHGIEV 122

Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           V ++++ E     ++F +   TR    R ++ +K A++ D  I      S  ITG  ++ 
Sbjct: 123 VTQVLKDECDRLNEVFFYFIQTR----RPYVAMKYAMTMDGKIATYSGLSKWITGEKARE 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V  LR +  AI+ GIGTVLADDP LTCR+ G    +P+RII D H KL L+S+I+ TA 
Sbjct: 179 HVQNLRHRYKAIMAGIGTVLADDPLLTCRIEGGV--NPIRIICDTHLKLPLESQIVNTAK 236

Query: 242 LAPVIIV----------------TENDDPVLALAFRK---------KNINIIYCDCR--- 273
             P I+                 TE D       ++K           I I+Y   +   
Sbjct: 237 EVPTIVAVSERYRETAHSEALPDTEKDSIEENNNYQKNRKITRLEENGIEILYVAEKNGH 296

Query: 274 -DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
            DL  L+  L  R + S+L+EGG  +  S + S +V+ +  Y +  + G     +P+E
Sbjct: 297 IDLNDLMQKLGERSIDSILLEGGGILNWSALKSGIVNKVYAYIAPKLFGGADAKTPIE 354


>gi|282850242|ref|ZP_06259621.1| riboflavin biosynthesis protein RibD [Veillonella parvula ATCC
           17745]
 gi|282579735|gb|EFB85139.1| riboflavin biosynthesis protein RibD [Veillonella parvula ATCC
           17745]
          Length = 403

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 130/349 (37%), Positives = 181/349 (51%), Gaps = 34/349 (9%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++   G TS NP V  ++VKD  +IG G     G  HAEV AL +AG+ 
Sbjct: 3   DVVYMKRAIELAKLATGHTSPNPLVGAVVVKDNTIIGEGYHHKAGTAHAEVHALNQAGDN 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSHYG++PPCA  IIE GI +V+V   DP+  VSG+G++ L + GI +
Sbjct: 63  AKGATLYVTLEPCSHYGKTPPCALRIIEAGIAKVIVGSTDPNPLVSGKGMELLREAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  +   E       + T     +  +TLK A+S D  I  +   S  IT   S+   H+
Sbjct: 123 VCPVCSDECAELNEHFFTYIQTGKPFVTLKSAMSLDGKIATSTGQSQWITNESSRRDGHV 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNG------------LQE----HSPMRIILDPHFK 229
           LRA  DA+LVGIGT+LAD+P+L CRL              L E    H P  IILD   +
Sbjct: 183 LRATHDAMLVGIGTILADNPQLNCRLTDSELSDALLDKSILDEPITIHQPDVIILDSLGR 242

Query: 230 LSLDSKIIKTALLAPVIIVTEN--DDPVLAL-------------AFRKKNINIIYCDCRD 274
               S++ +       I V++    D + AL             + RK     I  D + 
Sbjct: 243 TPTTSRVFEINNRKIHIFVSKGCPKDRIQALEQVGAQVTVVESISTRKSKSTDIVIDIKK 302

Query: 275 LK--KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           L    +LT L   G TS+LVEGG+A+  SF+ ++  D ++ Y    +IG
Sbjct: 303 LSIDDILTKLGELGYTSILVEGGSAIISSFVETKNFDKVVTYIGNTIIG 351


>gi|8039802|sp|P50853|RIBD_ACTPL RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
           RecName:
           Full=Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase; Includes: RecName:
           Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
          Length = 376

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 123/373 (32%), Positives = 202/373 (54%), Gaps = 24/373 (6%)

Query: 1   MPVSSF----DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAE 56
           +P +SF    D  +M  A+  ++  +G T+ NP V C+IVK+G ++  G     G  HAE
Sbjct: 5   LPSNSFKTMTDLDYMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAE 64

Query: 57  VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
             A+    E+  GATAYVTLEPC H+GR+PPC+  +IE GI++V +   DP+  V+GRG 
Sbjct: 65  RNAVLHCKEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGA 124

Query: 117 QWLSQKGI-IVDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS 171
             L Q G+ +V+ +++ E      IF H   T    KR ++ +K A++ D  I      S
Sbjct: 125 NQLRQAGVEVVEGLLKEECDALNPIFFHYIQT----KRPYVLMKYAMTADGKIATGSGES 180

Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231
             ITG  ++ +V   R Q  AI+VG+ TVLAD+P L  R+   ++  P+RI+ D   +  
Sbjct: 181 KWITGESARARVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQ--PVRIVCDSQLRTP 238

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGV 287
           LD ++++TA     +I T +DD      FR   ++++ C  R    DL+ LL  L    +
Sbjct: 239 LDCQLVQTAKEYRTVIATVSDDLQKIEQFRPLGVDVLVCKARNKRVDLQDLLQKLGEMQI 298

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR----- 342
            SLL+EGG+++  S + S +V+ +  Y +  ++G     +P+    +++    V+     
Sbjct: 299 DSLLLEGGSSLNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKS 358

Query: 343 RDYFGSDVCLEYI 355
            +  G D+ L+Y+
Sbjct: 359 TELIGEDILLDYV 371


>gi|323178323|gb|EFZ63901.1| riboflavin biosynthesis protein RibD [Escherichia coli 1180]
          Length = 361

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 131/367 (35%), Positives = 190/367 (51%), Gaps = 28/367 (7%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+A+GA
Sbjct: 1   MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
           TAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V   +
Sbjct: 61  TAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVSHGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V   RAQ
Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQRAQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDSKIIK 238
           S AIL    TVLADDP LT R + L E +           P+RI++D   +++ + +I++
Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHRIVQ 240

Query: 239 ----TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
               T         +E  + V  L   +   ++      DL  L+  L  + + S+ VE 
Sbjct: 241 QPGETWFARTQEDSSEWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSIWVEA 294

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349
           G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      + G D
Sbjct: 295 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRHVGPD 353

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 354 VCLHLVG 360


>gi|307825581|ref|ZP_07655799.1| riboflavin biosynthesis protein RibD [Methylobacter tundripaludum
           SV96]
 gi|307733467|gb|EFO04326.1| riboflavin biosynthesis protein RibD [Methylobacter tundripaludum
           SV96]
          Length = 361

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 116/325 (35%), Positives = 184/325 (56%), Gaps = 13/325 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DA +M+ A+  ++     T  NP V C++V+DG VIG+G     G  HAEV+AL+    +
Sbjct: 6   DAFYMAQAISLAKKGRYTTDPNPRVGCVLVRDGEVIGQGWHVKAGQGHAEVEALKNV-PD 64

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GATAYVTLEPCSH GR+PPC   +I+ G+ RVV  + DP+ +VSG GL+ L   GI +
Sbjct: 65  AKGATAYVTLEPCSHQGRTPPCCDALIKAGVSRVVAAMQDPNPQVSGSGLKKLKVAGIEV 124

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  +++ +       ++ R  + R  +  K+A+S D    MA   S  IT   ++  VH 
Sbjct: 125 ICGVLQEDALALNRGFIKRMTDSRPFVRSKLAMSLDGRTAMASGESKWITSNEARADVHR 184

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           LRA+S AIL GI TVLADDP L  R++G  LQ   P+R++LD H  + + +++ K  L  
Sbjct: 185 LRAESSAILTGINTVLADDPALNARVDGDVLQ---PVRVVLDTHLNMPVTAQMAK--LPG 239

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299
             +I+T   D     A ++    +    C+    DL+ ++  L  + +  LLVE G+ + 
Sbjct: 240 RSLILTCAQDEQKQGALQQVGFEVYQLPCKNGRLDLQAVMDFLGQQQINELLVEAGSVLN 299

Query: 300 HSFINSRLVDSIILYRSQIVIGEGG 324
            + ++   VD  ++Y +  ++G+ G
Sbjct: 300 GALLDEDWVDEYVIYMAPCILGDQG 324


>gi|163750014|ref|ZP_02157258.1| riboflavin biosynthesis protein RibD [Shewanella benthica KT99]
 gi|161330288|gb|EDQ01269.1| riboflavin biosynthesis protein RibD [Shewanella benthica KT99]
          Length = 380

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 127/339 (37%), Positives = 186/339 (54%), Gaps = 23/339 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FMS A++ +R  +  T  NP V C+I  D  ++G G     G PHAEV AL  A + 
Sbjct: 6   DTEFMSRAIKLARRGLYTTRPNPCVGCVITLDDQILGEGFHIRAGGPHAEVHALAMATQR 65

Query: 67  A------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           A      +GATAYVTLEPCSHYGR+PPCA+ +I+ GI RVVV V+DP+ RVSGRG+  L 
Sbjct: 66  ADGLADLKGATAYVTLEPCSHYGRTPPCAEALIKHGISRVVVAVEDPNPRVSGRGINMLK 125

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI VD  ++  E       ++ R       +T+K+A S D    ++   S  ITG  S
Sbjct: 126 DAGIKVDVGLLGDEAAQINPGFMKRMQSALPWVTVKLAASLDGKTALSNGASKWITGPES 185

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR---LNGLQEH-------SPMRIILDPHFK 229
           +  V  LRA+S A++ GI TVL DDP L  R   L  L +         P+R+ILD   +
Sbjct: 186 RRDVQRLRARSCALVTGIETVLLDDPSLNVRHSELGLLAQQVDADSLLQPLRVILDSRAR 245

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN-IIYCDCRDLKKLLTIL---VGR 285
           L+  +K+   A+ +P+++V+  D P        ++++ +      D +  LT L   +G+
Sbjct: 246 LTSSAKLF--AITSPILLVSCVDYPQAEQDTWPEHVSGLTLASDNDGRVELTALFSHLGK 303

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
              S+L+E GA +A S I+    D +ILY++  ++G  G
Sbjct: 304 TCNSVLIEAGATLAGSVISHNHADELILYQAMKLLGANG 342


>gi|313109499|ref|ZP_07795455.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
           39016]
 gi|310881957|gb|EFQ40551.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
           39016]
          Length = 373

 Score =  196 bits (497), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 123/346 (35%), Positives = 179/346 (51%), Gaps = 33/346 (9%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ D  +M+ AL  +R  +  T  NP V C++VKDG V+G G     G PHAEV AL +
Sbjct: 1   MNAADPLYMARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V GRGL  L Q 
Sbjct: 61  AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVGGRGLLRLMQA 120

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V   ++E+E +     ++ R       + +K+A+S D    MA   S  ITG  +++
Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPAARS 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRA+S  +L G  T+LADD  L  R + L              P+R+++D   ++ 
Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRVP 240

Query: 232 LDSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
           L+S   +     P ++ T           +    +LAL   + ++        DL KLL 
Sbjct: 241 LESAFYQA---GPALVATCAAASARERFQDAGHELLALPSAEGHV--------DLHKLLL 289

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            L  RG   +LVE G  +A +F    LVD   L+ +   +G    P
Sbjct: 290 ELAARGANEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARP 335


>gi|152998046|ref|YP_001342881.1| riboflavin biosynthesis protein RibD [Marinomonas sp. MWYL1]
 gi|150838970|gb|ABR72946.1| riboflavin biosynthesis protein RibD [Marinomonas sp. MWYL1]
          Length = 384

 Score =  196 bits (497), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 201/368 (54%), Gaps = 20/368 (5%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M+ A++ ++     T  NP V C++VKD  +IG+G     G  HAEV AL +A  +A G
Sbjct: 9   WMAKAIQLAKKGRYTTHPNPRVGCVLVKDQQIIGQGFHVKAGEGHAEVNALADAKHDAVG 68

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           ATAYVTLEPCSH G++PPCA  +I+ G+ RVV  + DP+  VSG GL  + + GI I+  
Sbjct: 69  ATAYVTLEPCSHQGKTPPCADALIKAGVARVVYGMQDPNPEVSGNGLAKIKKAGIEIIGP 128

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++ES+ +     ++ R  E   ++ +K+A+S D    M    S  IT   ++  V  LRA
Sbjct: 129 ILESDCEALNPGFIKRMREGLPYVRVKLAMSMDGRTAMESGESQWITDSAARLDVQRLRA 188

Query: 189 QSDAILVGIGTVLADDPELTCRL-NGLQE------HSPMRIILDPHFKLSLDSKIIKTAL 241
           QSDAI+ GIG+VLAD+P +T R+ N  QE        P+R+++D    +  ++KI+  A 
Sbjct: 189 QSDAIVTGIGSVLADNPSMTVRIDNDDQEADPKSVRQPIRVVMDTALSILPEAKILYPAN 248

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC----DCR-DLKKLLTILVGRGVTSLLVEGGA 296
            A V  V E  +        KK + + +     D R DL   +  L   G+  +L+E GA
Sbjct: 249 QAWVFSVEEEVEAEHLELLTKKGVTVRFAPRGEDGRLDLLDAMEQLADAGINEVLLEAGA 308

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLE--EGYLEKNFMCVRRDYFGSDVC 351
            +A  F+ + L+D II+Y +  ++G    P    PL+  +  ++     VR+   G DV 
Sbjct: 309 ELAGGFLEAGLIDEIIVYMAPKLLGSSARPLFKLPLDVMDEAVDLTLKSVRQ--VGQDVR 366

Query: 352 LEYIGKNL 359
           L YI K L
Sbjct: 367 LVYIPKYL 374


>gi|152986432|ref|YP_001346431.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
           PA7]
 gi|150961590|gb|ABR83615.1| riboflavin biosynthesis protein RibD [Pseudomonas aeruginosa PA7]
          Length = 373

 Score =  196 bits (497), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 122/346 (35%), Positives = 181/346 (52%), Gaps = 33/346 (9%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ D  +M+ AL  +R  +  T  NP V C++V+DG V+G G     G PHAEV AL +
Sbjct: 1   MNAADPLYMARALELARQGLYSTHPNPRVGCVLVRDGQVVGEGWHVRAGEPHAEVHALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE+ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q 
Sbjct: 61  AGEKARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V   ++E+E +     ++ R       + +K+A+S D    MA   S  ITG  +++
Sbjct: 121 GIAVHSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPAARS 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRA+S  +L G  T+LADD  L  R + L              P+R+++D   ++ 
Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLDAELTALAAARQPLRVLVDGRLRVP 240

Query: 232 LDSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
           L+S   +     P ++ T           +    +LAL   + ++        DL KLL 
Sbjct: 241 LESAFYQA---GPALVATCAAASARERFQDAGHELLALPSAEGHV--------DLHKLLL 289

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            L  RG   +LVE G  +A +F    LVD   L+ +   +G    P
Sbjct: 290 ELAARGANEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARP 335


>gi|294791895|ref|ZP_06757043.1| riboflavin biosynthesis protein RibD [Veillonella sp. 6_1_27]
 gi|294457125|gb|EFG25487.1| riboflavin biosynthesis protein RibD [Veillonella sp. 6_1_27]
          Length = 404

 Score =  196 bits (497), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 130/349 (37%), Positives = 181/349 (51%), Gaps = 34/349 (9%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++   G TS NP V  ++VKD  +IG G     G  HAEV AL +AG+ 
Sbjct: 4   DVVYMKRAIELAKLATGHTSPNPLVGAVVVKDNTIIGEGYHHKAGTAHAEVHALNQAGDN 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSHYG++PPCA  IIE GI +V+V   DP+  VSG+G++ L + GI +
Sbjct: 64  AKGATLYVTLEPCSHYGKTPPCALRIIEAGIAKVIVGSTDPNPLVSGKGMELLREAGIEV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  +   E       + T     +  +TLK A+S D  I  +   S  IT   S+   H+
Sbjct: 124 VCPVCSDECAELNEHFFTYIQTGKPFVTLKSAMSLDGKIATSTGQSQWITNESSRRDGHV 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNG------------LQE----HSPMRIILDPHFK 229
           LRA  DA+LVGIGT+LAD+P+L CRL              L E    H P  IILD   +
Sbjct: 184 LRATHDAMLVGIGTILADNPQLNCRLTDSELSDALLDKSILDEPITIHQPDVIILDSLGR 243

Query: 230 LSLDSKIIKTALLAPVIIVTEN--DDPVLAL-------------AFRKKNINIIYCDCRD 274
               S++ +       I V++    D + AL             + RK     I  D + 
Sbjct: 244 TPTTSRVFEINNCKIHIFVSKGCPKDRIQALEQVGAQVTVVESISTRKSKSTDIVIDIKK 303

Query: 275 LK--KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           L    +LT L   G TS+LVEGG+A+  SF+ ++  D ++ Y    +IG
Sbjct: 304 LSIDDILTKLGELGYTSILVEGGSAIISSFVETKNFDKVVTYIGNTIIG 352


>gi|294627697|ref|ZP_06706279.1| 5-amino-6-uracil reductase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292598049|gb|EFF42204.1| 5-amino-6-uracil reductase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 369

 Score =  196 bits (497), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 120/328 (36%), Positives = 186/328 (56%), Gaps = 10/328 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D R+M+ ALR +      T  NP V C+IV+DG+ +G G     G PHAEV AL  A
Sbjct: 9   SADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRAA 68

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPC+HYGR+PPCA  +IE G+ RVV  + DP  +V+G G   L + G
Sbjct: 69  GELARGATAYVTLEPCAHYGRTPPCALALIEAGVMRVVAAMADPFPQVNGGGFALLREAG 128

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I ++  +M+++ +     +L+R    R  + +K+  S D    +A   S  IT   ++  
Sbjct: 129 IDVLSGVMQAQARTLNRGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITSADARAD 188

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----PMRIILDPHFKLSLDSKIIK 238
           V   RA++ AIL G GTV+ADDP +T R+    E S    P+R++LD   + +L  + I+
Sbjct: 189 VQRWRARAGAILTGAGTVMADDPSMTVRMG---EDSPVVPPLRVVLDAGLR-TLACRNIR 244

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
               AP + +   D    +L   +     ++    DL  +L +L  RG+  + VEGGA +
Sbjct: 245 QG-DAPTLYLHGEDVSAPSLDDAQFLAMPLHAGRFDLAAVLALLAERGINEVHVEGGATL 303

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP 326
           + + + + LVD +++Y + +++G+   P
Sbjct: 304 SGALLQAGLVDELLVYVAPVLLGDSAKP 331


>gi|99081975|ref|YP_614129.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Ruegeria sp. TM1040]
 gi|99038255|gb|ABF64867.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Ruegeria sp. TM1040]
          Length = 358

 Score =  196 bits (497), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 128/323 (39%), Positives = 183/323 (56%), Gaps = 7/323 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL   R   G T  NP+V C+IV+ G V+GRG T  GG PHAE  AL +AG  ARGA
Sbjct: 1   MGLALSLGRRGQGRTWPNPAVGCVIVQKGRVVGRGWTQPGGRPHAEPMALAQAGAAARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           TAYV+LEPC+H+G++PPCAQ +IE G+ RVV  ++D D RVSG+G + L   GI V   +
Sbjct: 61  TAYVSLEPCAHHGKTPPCAQALIEAGVARVVAAIEDSDPRVSGQGFEMLRAAGISVTTGV 120

Query: 131 ESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            +E   F H  +  +  + R  +TLK+A S D  I      S  ITG  ++  VH +RA+
Sbjct: 121 RAEEAGFDHEGFFLKTEQGRPFVTLKLAASFDGRIATGSGQSQWITGPEARRVVHAMRAR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV- 248
            DA++VG GT  ADDP LT R  G+ +  P R+++  H  L L SK+ ++A   P+ +  
Sbjct: 181 HDAVMVGAGTARADDPSLTVRDLGIDQQ-PARVVVSRHLDLPLISKLARSAAEVPLYLCH 239

Query: 249 TENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
               D     A+     +++ C+      D   +L  L   G+T +  EGG A+A S + 
Sbjct: 240 GTGADTERLRAWDGLGAHLLPCNALGTQLDPHDVLQQLGSVGLTRVFCEGGGALAASLLA 299

Query: 305 SRLVDSIILYRSQIVIGEGGIPS 327
             LVD ++ + + + IG  G+PS
Sbjct: 300 HDLVDELVGFSAGLTIGAEGLPS 322


>gi|110679096|ref|YP_682103.1| riboflavin biosynthesis protein ribD [Roseobacter denitrificans OCh
           114]
 gi|109455212|gb|ABG31417.1| riboflavin biosynthesis protein ribD [Roseobacter denitrificans OCh
           114]
          Length = 365

 Score =  196 bits (497), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 128/326 (39%), Positives = 181/326 (55%), Gaps = 7/326 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           +R+M+ AL   R   G    NP+V C+IVKDG +IGRG T  GG PHAE QAL +A  +A
Sbjct: 5   SRYMALALSLGRRGFGRVWPNPAVGCVIVKDGRIIGRGWTQPGGRPHAETQALAQAAAQA 64

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           RGA  YVTLEPC+H+G++PPCA+ ++  G+ RV     DPD RV G G + L Q GI V 
Sbjct: 65  RGADVYVTLEPCAHHGKTPPCAEALVRAGVARVFAATGDPDPRVHGAGFRALEQAGIHVQ 124

Query: 128 R-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++E++ +     +  R    R  +TLK+A S D  I      S  ITG  ++  VH L
Sbjct: 125 SGILEAQARRDNAGFFARVELDRPFMTLKLAGSFDGRIATGTGESKWITGPQARRVVHAL 184

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA+ DA++VG GT   DDP LT R  G     P R+++     + L   + +TA   PVI
Sbjct: 185 RARHDAVMVGAGTARKDDPALTVRDLG-TAWQPARVVISRRLDVPLMGVLARTATEVPVI 243

Query: 247 IVTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           +    D DP L   ++     ++ C  R    D   ++  L G G+T +  EGG+A+A S
Sbjct: 244 LCHGKDADPQLIRTWQDLGAVLLPCAARGGQLDPADVMRQLAGHGLTRIFCEGGSALAAS 303

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS 327
              + LVD +I + + + IG  G+PS
Sbjct: 304 LFEADLVDELIGFTAGLAIGAEGLPS 329


>gi|325918412|ref|ZP_08180540.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325535374|gb|EGD07242.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 364

 Score =  196 bits (497), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 135/367 (36%), Positives = 208/367 (56%), Gaps = 11/367 (2%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M V+++D R+M+ ALR +      T  NP V C+IV+DG+ +G G     G PHAEV AL
Sbjct: 1   MNVTAYDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AG  ARGATAYVTLEPC+HYGR+PPCA  +IE G+ RVV  + DP  +V+G G   L 
Sbjct: 61  RAAGALARGATAYVTLEPCAHYGRTPPCALALIEAGVARVVAAMADPFPQVNGGGFALLR 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI +V  +++++ +     +L+R    R  + +K+  S D    +A   S  ITG  +
Sbjct: 121 EAGIEVVSGVLQAQARQLNQGFLSRVERGRPWLRVKLGASLDGRTALASGQSKWITGADA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-SPMRIILDPHFKLSLDSKIIK 238
           +  V   RA++ AIL G GTVLADDP +T RL        P+R++LD   + +L+ + I+
Sbjct: 181 RADVQRWRARAGAILTGAGTVLADDPAMTVRLGDDTPFVPPLRVVLDARLR-TLECEHIR 239

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAA 297
               AP + +  N  PV +L    + + +   + R DL  +L +L  RG+  +  E GA 
Sbjct: 240 QG-DAPTLYLHGNAVPVPSLQ-NAEFVGMPLHEGRFDLGSVLALLSERGINEVHAEAGAT 297

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           ++ + + + LVD +++Y + +V+G+     PL  G L  + M  RR    +DV    +G+
Sbjct: 298 LSGALLQAGLVDELLVYFAPVVLGDAA--RPLLAG-LGIDTMAQRRTLHLADV--RQLGQ 352

Query: 358 NLCLQEL 364
           +L L+ L
Sbjct: 353 DLRLRYL 359


>gi|325295467|ref|YP_004281981.1| riboflavin biosynthesis protein RibD [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065915|gb|ADY73922.1| riboflavin biosynthesis protein RibD [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 362

 Score =  196 bits (497), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 123/324 (37%), Positives = 185/324 (57%), Gaps = 7/324 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D +FM  A+  +    G T  NP+V  +IVKDG VI  G     G PHAE  A+ +AGE+
Sbjct: 4   DEKFMKLAISEAYKAKGRTLPNPAVGAVIVKDGKVIATGYHERAGLPHAESVAISKAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YVTLEPC+HYG++PPC++ II+ GI+RVVV + DP+    G G++ L   GI V
Sbjct: 64  AKGATLYVTLEPCNHYGKTPPCSEKIIKAGIKRVVVGIRDPNPVARG-GVEKLKNAGIEV 122

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E    +  ++    EKR  ++LK+A + D  I      S  IT   S+  VH+
Sbjct: 123 KVGVLEKECFELIDDFIVNLKEKRPFVSLKLAATLDGKIADYKGNSKWITSEESRKLVHI 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR+  +A++VGIGTVL DDP L  R     +  P  I++DPH K+ L  ++IK+     +
Sbjct: 183 LRSYHNAVMVGIGTVLKDDPLLNVR-KVPADVQPKAIVVDPHLKIPLSCRLIKSRSEDLI 241

Query: 246 IIVT-ENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGR-GVTSLLVEGGAAVAHS 301
           II T E+     AL  + K + ++    +  +LK  L  L G  G+ S++ EGG+ +A S
Sbjct: 242 IITTRESMLSDKALILKGKGVKLLEAGENSIELKIALEKLKGEFGIYSVMCEGGSKLAWS 301

Query: 302 FINSRLVDSIILYRSQIVIGEGGI 325
            +   L+D   L+ +  ++G  G+
Sbjct: 302 LLEGNLIDKFYLFYAPKILGGKGM 325


>gi|308070849|ref|YP_003872454.1| riboflavin biosynthesis protein ribD [Paenibacillus polymyxa E681]
 gi|305860128|gb|ADM71916.1| Riboflavin biosynthesis protein ribD [Paenibacillus polymyxa E681]
          Length = 366

 Score =  196 bits (497), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 128/325 (39%), Positives = 179/325 (55%), Gaps = 10/325 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           ++M  AL  +R   G T  NP V  +IV +G ++G G     G PHAE+ AL  AGE A+
Sbjct: 6   KYMRLALENARSAKGQTEPNPLVGSVIVNNGRIVGIGAHLKPGEPHAEIHALRMAGEHAQ 65

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GAT YVTLEPCSH+GR+ PCA+ I++ GIRRVV+   DP+  VSGRG+Q L   GI ++ 
Sbjct: 66  GATIYVTLEPCSHHGRTGPCAEAIVKAGIRRVVIAALDPNPLVSGRGVQILKDAGIEVIV 125

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + E E       +    V KR  IT+K AV+ D  I      S  IT   ++  VH LR
Sbjct: 126 GVCEQESIRMNEVFNQYIVSKRPFITIKSAVTLDGKIATRTSESKWITSEAAREDVHRLR 185

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            +   ILVG+ TV+ D+P+LT RL   +  +P+RIILD   ++ LD+++I T   AP  I
Sbjct: 186 NEHVGILVGVQTVIHDNPQLTTRLP--EGRNPIRIILDSKLRIPLDARVI-TDGEAPTWI 242

Query: 248 VT-----ENDDPVL-ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            T     E     L  L  +         +  +L ++L IL    V+S+ VEGGA V  S
Sbjct: 243 FTGRVYDEGKRSQLEQLGVKVYTTQDENSERVNLPQMLDILGAAEVSSVFVEGGAEVNAS 302

Query: 302 FINSRLVDSIILYRSQIVIGEGGIP 326
           F+   L D ++LY +  ++G    P
Sbjct: 303 FVQQGLADRLVLYIAPKLVGGRAAP 327


>gi|291484757|dbj|BAI85832.1| riboflavin-specific deaminase [Bacillus subtilis subsp. natto
           BEST195]
          Length = 361

 Score =  196 bits (497), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 121/325 (37%), Positives = 169/325 (52%), Gaps = 12/325 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL  ++   G T +NP V  ++VKDG ++G G     G  HAEV A+  AG  A G
Sbjct: 5   YMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAEG 64

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI----- 124
           A  YVTLEPCSHYG++PPCA+ II  GI+RV V + DP+  V+GRG+  + + GI     
Sbjct: 65  ADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMIKEAGIEVREG 124

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           I+    ES  + FLH   T       ++TLK A S D  I  +   S  IT   ++    
Sbjct: 125 ILADQAESLNEKFLHFMRT----GLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQ 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             R    +ILVG+GTV AD+P LTCRL  + +  P+R+ILD    +  D+K+I   +   
Sbjct: 181 QYRKTHQSILVGVGTVKADNPSLTCRLPNVTKQ-PVRVILDTVLSIPEDAKVICDQIAPT 239

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHSF 302
            I  T   D           +NI   +   ++   +L IL   G+ S+ VEGG+AV  SF
Sbjct: 240 WIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVHGSF 299

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327
           +       II Y +  +IG    PS
Sbjct: 300 VKEGCFQEIIFYFAPKLIGGTHAPS 324


>gi|261381200|ref|ZP_05985773.1| riboflavin biosynthesis protein RibD [Neisseria subflava NJ9703]
 gi|284795821|gb|EFC51168.1| riboflavin biosynthesis protein RibD [Neisseria subflava NJ9703]
          Length = 372

 Score =  196 bits (497), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 14/363 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D + M  AL  ++     TS NP V C+I     ++G+G     G PHAEV AL +A
Sbjct: 3   SALDTQMMQTALELAKLGRFSTSPNPRVGCVIAHGAQIVGQGFHVKAGEPHAEVHALRQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G  A+GATAYVTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  VSG+GL  L   G
Sbjct: 63  GAAAKGATAYVTLEPCSHYGRTPPCAEALVHSGVTRVVAAMTDPNPLVSGKGLSMLEAAG 122

Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  ++E++ +     +L+R    R  + LK A S D    ++   S  ITG  ++  
Sbjct: 123 IRTESGLLEAQARELNRGFLSRIERGRPFVRLKCAASLDGKTALSDGRSFWITGEAARED 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V +LRA+S A+L GIGTVLAD+P+L  R    L++  P RI+LD   ++ LD  ++    
Sbjct: 183 VQILRAESCAVLTGIGTVLADNPKLNVRSFPTLRQ--PARIVLDSRLQIPLDCHLVTDTD 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINII----YCDCR-DLKKLLTILVGRGVTSLLVEGGA 296
              VI+   +D+  L    + ++I II    + + R +L  L+  L   G   +LVE G+
Sbjct: 241 SPTVIVTLSSDEQRLQALGKFEHIRIIRPSEHINGRINLLSLMPQLAELGFGEVLVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
            +  +F+   LVD I+LY++  ++G G    PL    L +N   +  D       +E IG
Sbjct: 301 TLTSAFLKDDLVDEIVLYQAPKLLGAG---KPLFS--LPENPAALLSDGPWQSQSVEIIG 355

Query: 357 KNL 359
           +++
Sbjct: 356 QDI 358


>gi|153803015|ref|ZP_01957601.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MZO-3]
 gi|124121458|gb|EAY40201.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MZO-3]
          Length = 367

 Score =  196 bits (497), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 121/339 (35%), Positives = 181/339 (53%), Gaps = 27/339 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +AGE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+G+G+Q L
Sbjct: 61  MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120

Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI V+  ++E++ +     +L R       + LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPFVQLKMAASLDGQTALANGQSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R + L               P+R+ILD  
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPLSVQAQYAEADLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGR- 285
            +L             P + + +   PVL +A     + I   + + DL++LL  L  + 
Sbjct: 241 HQLH------------PELALYQTPSPVLRVASENAELCISAKNGKLDLRELLAQLAQQH 288

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            V  + VE G+ +A S I  +LVD IILY +  ++G  G
Sbjct: 289 NVNQVWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDG 327


>gi|126207866|ref|YP_001053091.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
           L20]
 gi|1173516|gb|AAA86522.1| riboflavin-specific deaminase [Actinobacillus pleuropneumoniae]
 gi|126096658|gb|ABN73486.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 410

 Score =  195 bits (496), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 123/373 (32%), Positives = 202/373 (54%), Gaps = 24/373 (6%)

Query: 1   MPVSSF----DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAE 56
           +P +SF    D  +M  A+  ++  +G T+ NP V C+IVK+G ++  G     G  HAE
Sbjct: 39  LPSNSFKTMTDLDYMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAE 98

Query: 57  VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
             A+    E+  GATAYVTLEPC H+GR+PPC+  +IE GI++V +   DP+  V+GRG 
Sbjct: 99  RNAVLHCKEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGA 158

Query: 117 QWLSQKGI-IVDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS 171
             L Q G+ +V+ +++ E      IF H   T    KR ++ +K A++ D  I      S
Sbjct: 159 NQLRQAGVEVVEGLLKEECDALNPIFFHYIQT----KRPYVLMKYAMTADGKIATGSGES 214

Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231
             ITG  ++ +V   R Q  AI+VG+ TVLAD+P L  R+   ++  P+RI+ D   +  
Sbjct: 215 KWITGESARARVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQ--PVRIVCDSQLRTP 272

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGV 287
           LD ++++TA     +I T +DD      FR   ++++ C  R    DL+ LL  L    +
Sbjct: 273 LDCQLVQTAKEYRTVIATVSDDLQKIEQFRPLGVDVLVCKARNKRVDLQDLLQKLGEMQI 332

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR----- 342
            SLL+EGG+++  S + S +V+ +  Y +  ++G     +P+    +++    V+     
Sbjct: 333 DSLLLEGGSSLNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKS 392

Query: 343 RDYFGSDVCLEYI 355
            +  G D+ L+Y+
Sbjct: 393 TELIGEDILLDYV 405


>gi|229174066|ref|ZP_04301602.1| Riboflavin biosynthesis protein [Bacillus cereus MM3]
 gi|228609398|gb|EEK66684.1| Riboflavin biosynthesis protein [Bacillus cereus MM3]
          Length = 350

 Score =  195 bits (496), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 121/338 (35%), Positives = 184/338 (54%), Gaps = 18/338 (5%)

Query: 23  GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
           G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARG T YVTLEPCSH+
Sbjct: 3   GQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARGGTIYVTLEPCSHH 62

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAY 141
           GR+ PCA+ I++ GI++VVV   DP+  VSG G++ L   GI ++  + E E K     +
Sbjct: 63  GRTGPCAEAIVQAGIKKVVVATLDPNPLVSGSGIKILQDAGIEVLVGVCEEESKKMNEVF 122

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
               + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R ++ AILVG  TV 
Sbjct: 123 NKYIMTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTVQ 182

Query: 202 ADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
            D+P LT R+ NG    +P+R+ILD   ++ +++ ++        I  T N       A 
Sbjct: 183 KDNPSLTTRIPNG---RNPIRVILDSTLRIPMEANVVADREAPTWIFTTSNYAAEKRKAL 239

Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
               + +         +L ++L +L  +GV+SLL+EGG  V  SFI ++L+D +ILY + 
Sbjct: 240 ENAGVKVFVTSGEKHINLYEMLDVLGRKGVSSLLIEGGGEVNASFIENKLMDKLILYFAP 299

Query: 318 IVIGEGGIPSPLEEGYLEK----------NFMCVRRDY 345
            +IG    PS +E   + K          +F  V +DY
Sbjct: 300 KIIGGRLAPSFVEGTGITKMQDAIEFKDISFTQVGKDY 337


>gi|304315557|ref|YP_003850702.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777059|gb|ADL67618.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 356

 Score =  195 bits (496), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 105/325 (32%), Positives = 185/325 (56%), Gaps = 7/325 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL+ ++  +G T+ NP V  +IVK+G +IG G   Y G PHAE+ AL+   E+  GA
Sbjct: 1   MKRALQLAKLGLGHTNPNPLVGAVIVKNGRIIGEGYHEYYGGPHAEINALKSVKEDVIGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
             YVTLEPC HYG++PPC   I++ GI+ V + ++DP+  VSG+G++ L + G+ +   +
Sbjct: 61  QLYVTLEPCCHYGKTPPCVDAIVKSGIKDVFIAMEDPNKLVSGKGIKHLKEAGLNVYTGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           ++ E +     ++     K+ ++ LK A++ D  I      S  IT   S+  VH++R  
Sbjct: 121 LKEEAEKINEIFIKYITTKKPYVILKSAMTIDGKIATYTGDSKWITNEKSREHVHIMRGC 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
             AI+VG+ TV+ D+P LT R++G +  +P+R+++D   ++ L++ ++       ++  T
Sbjct: 181 VMAIMVGVNTVIKDNPYLTARIDGFK--NPLRVVVDSRGRIPLEANVVIDKSAKTIVATT 238

Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           +        A R   +++   D      DLKKL+ +L  RG+ S+++EGG  + +S +  
Sbjct: 239 DMMPYKKVKALRDLGVDVFVLDKLNGEVDLKKLMDMLGERGIDSVIIEGGGTLNYSALKE 298

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLE 330
            +VD ++ Y +  +IG     +P+E
Sbjct: 299 GIVDKVMFYIAPKIIGGSNSLTPVE 323


>gi|254286058|ref|ZP_04961019.1| riboflavin biosynthesis protein RibD [Vibrio cholerae AM-19226]
 gi|150423968|gb|EDN15908.1| riboflavin biosynthesis protein RibD [Vibrio cholerae AM-19226]
          Length = 367

 Score =  195 bits (496), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 180/339 (53%), Gaps = 27/339 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +AGE   GATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+GRG+Q L
Sbjct: 61  MRQAGELTHGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGRGVQML 120

Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI V+  ++E++ +     +L R      ++ LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R   L               P+R+ILD  
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGR- 285
            +L             P + + +   PVL +A     + I   + + DL++LL  L  + 
Sbjct: 241 HQLH------------PELALYQTPSPVLRVASENAELCISAENGKLDLRELLAQLAQQH 288

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            V  L VE G+ +A S I  +LVD IILY +  ++G  G
Sbjct: 289 NVHQLWVEAGSQLAKSLIEQKLVDEIILYLAPKLMGSDG 327


>gi|313496881|gb|ADR58247.1| RibD [Pseudomonas putida BIRD-1]
          Length = 376

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 124/339 (36%), Positives = 182/339 (53%), Gaps = 27/339 (7%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            DA +M+ AL  +R  +  T  NP V C+IV+DG V+G G     G PHAEV AL +AGE
Sbjct: 8   LDAHYMARALELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQAGE 67

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            ARGA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV  + DP+ +V+G+GL+ L++ GI 
Sbjct: 68  LARGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGLRRLAEAGIE 127

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   ++E+E +     +L R       +  K+A+S D    MA   S  ITG  +++ V 
Sbjct: 128 VASGVLEAEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARSAVQ 187

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDS 234
            LRA+S  +L    +VLAD+  +T R   L             +P+R+++D   +LSL S
Sbjct: 188 RLRARSSVVLTSAASVLADNARMTVRGAELGLDAETTALALSRTPLRVLVDGRLRLSLAS 247

Query: 235 KIIKTALLAPVIIVTE-NDDPVLA------LAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
              +     P ++VT   DDP  A      L+    N  +      DL  LL  L  RGV
Sbjct: 248 PFFQA---GPALVVTAVADDPRYAAAGHELLSLPGDNGQV------DLGALLHALAARGV 298

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
             +L+E GA +  +F    LVD   L+ +   +G    P
Sbjct: 299 NEILLEAGAGLVGAFARQGLVDEYQLFVAGTFLGSQARP 337


>gi|18309548|ref|NP_561482.1| riboflavin biosynthesis protein RibD [Clostridium perfringens str.
           13]
 gi|18144225|dbj|BAB80272.1| riboflavin biosynthesis protein [Clostridium perfringens str. 13]
          Length = 366

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 121/336 (36%), Positives = 184/336 (54%), Gaps = 16/336 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  AL  +R   G  + NP V  +IVKDG +IG+G   + G  HAE+ A+  + + 
Sbjct: 2   DEFFMKKALELARKGEGYVNPNPLVGAVIVKDGEIIGQGYHEFFGGNHAEINAINSSIKS 61

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GAT YVTLEPC HYG++PPC + II+   +RVVV   DP+  VSG+G++ L + GI V
Sbjct: 62  TEGATIYVTLEPCCHYGKTPPCVEAIIKNKFKRVVVGTLDPNPLVSGKGIKILRESGIEV 121

Query: 127 D-RMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
              ++E E     +IF + Y+    E R  I LK A++ D  I      S  IT   S+ 
Sbjct: 122 KVGVLEKECIRLNEIF-NFYIK---ENRPFIALKWAMTLDGKIATKEFKSKWITNRKSRE 177

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKT 239
            VH LR +  +I+VGI TVL D+P+L CRLN  +  E    RI+LD   ++ LDS+I+K 
Sbjct: 178 FVHSLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKN 237

Query: 240 ALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294
              +  +I T N  D +     + K I +I  +      ++ ++L  L  + + S+L+EG
Sbjct: 238 QSESKTLIFTTNKKDKIKNEKLKDKGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEG 297

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           G  +  +F+ ++ V+ I  + +  V G     +P+E
Sbjct: 298 GGNLNFTFLENKKVNKIYAFVAPKVFGGKNAITPVE 333


>gi|317131626|ref|YP_004090940.1| riboflavin biosynthesis protein RibD [Ethanoligenens harbinense
           YUAN-3]
 gi|315469605|gb|ADU26209.1| riboflavin biosynthesis protein RibD [Ethanoligenens harbinense
           YUAN-3]
          Length = 367

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 120/332 (36%), Positives = 179/332 (53%), Gaps = 15/332 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL ++    G  + NP V  ++VKDG VIG G     G  HAE  AL    E 
Sbjct: 3   DETYMKLALEYAEKGCGWVNPNPMVGAVVVKDGRVIGTGWHRRYGELHAERNALASCTEP 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            +GAT YVTLEPC HYG++PPC   I+E GI RVVV   DP+  V+G+G++ L Q+GI V
Sbjct: 63  PQGATLYVTLEPCCHYGKTPPCTDAILESGIHRVVVGSVDPNPLVAGKGIRILRQRGIEV 122

Query: 127 DRMMESEG-----KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
              +  +      ++F H   TR      ++ +K A++ D  I      S  ITG  ++ 
Sbjct: 123 AEGVLGDACTGINEVFFHFIRTRM----PYVVMKYAMTMDGKIATCSGQSKWITGETARR 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +    R +   I+VGIGTVL DDP LTCRL      +P+RI+ D   +  L+++I++   
Sbjct: 179 RTQEDRHRYSGIMVGIGTVLTDDPLLTCRLP--DGRNPVRIVCDSRLRTPLNAQIVRITG 236

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
            AP I+VT + D  LA  +R     ++    +    DL+ L+T L  +G+ S+L+EGG A
Sbjct: 237 EAPTILVTCSRDEALAYPYRDAGCEVLTLPAKDGHVDLRALMTALGKKGIDSVLLEGGGA 296

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
           +  S + S +V+ +  Y +  + G     SP+
Sbjct: 297 LNWSALQSGIVNKVQAYVAPKLFGGINAKSPV 328


>gi|121533690|ref|ZP_01665517.1| riboflavin biosynthesis protein RibD [Thermosinus carboxydivorans
           Nor1]
 gi|121307681|gb|EAX48596.1| riboflavin biosynthesis protein RibD [Thermosinus carboxydivorans
           Nor1]
          Length = 379

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 118/314 (37%), Positives = 177/314 (56%), Gaps = 10/314 (3%)

Query: 23  GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
           G TS NP V  +IVKDG ++G G     G PHAE+ A+ +AG+ A+ AT YVTLEPCSHY
Sbjct: 19  GQTSPNPMVGAVIVKDGTIVGEGWHHRAGTPHAEIHAINQAGDLAKDATLYVTLEPCSHY 78

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAY 141
           GR+ PC Q I++ GI RVV  + DP+  V+G+G ++L + G+ +++ ++ +E       +
Sbjct: 79  GRTGPCVQAIVQAGITRVVAAMTDPNPLVAGQGFKFLRENGVEVIEGVLATEAAQLNEVF 138

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
           +     K     LK A+S D  I      S  ITG  ++ +VH  R++ DAILVG+GTV+
Sbjct: 139 IKWITTKMPFGILKTAMSLDGKIATYTGHSRWITGLPARTRVHEWRSKYDAILVGVGTVV 198

Query: 202 ADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
           AD+PELT RL  NG    +P+RI+ D   +  L++KI+       +I VT         A
Sbjct: 199 ADNPELTARLIPNG---KNPLRIVADSLARTPLNAKIVTDGKAPTIIAVTPEAPSDRIAA 255

Query: 260 FRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
            +     +I      D  DL+ L   L  R VTS+++EGG A+  S + + +VD +  + 
Sbjct: 256 LKASGAEVIQVARGPDGIDLRSLFAYLGSRSVTSVMIEGGGALGASALAANVVDKVYWFI 315

Query: 316 SQIVIGEGGIPSPL 329
           +  +IG    P P+
Sbjct: 316 APKIIGGRSAPGPI 329


>gi|156935037|ref|YP_001438953.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Cronobacter sakazakii ATCC BAA-894]
 gi|156533291|gb|ABU78117.1| hypothetical protein ESA_02888 [Cronobacter sakazakii ATCC BAA-894]
          Length = 367

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 122/327 (37%), Positives = 173/327 (52%), Gaps = 14/327 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ +      T  NP V C+IVK+G+++G G     G PHAEV AL  AG++
Sbjct: 3   DEFYMARALKLAGQGRFTTHPNPRVGCVIVKEGVIVGEGFHLRAGGPHAEVHALRMAGDK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  ARGATAYVTLEPCSHHGRTPPCCDALINAGVARVVAAMQDPNPQVAGRGLYRLQQAGIEV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R       I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPFIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRA+S AIL    TVLADDP +T R + L E +           P+RI+LD   +++   
Sbjct: 183 LRAESHAILTTSATVLADDPSMTVRWDELGEETQAVYPRENLRQPLRIVLDRQNQVTPAH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           KI+         +     D  +     ++    ++    DL  L+  L  R V SL VE 
Sbjct: 243 KIVNQP--GETWLARACPDDTVWPEGVEQLPTPVHNGKLDLVLLMMQLGKRQVNSLWVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321
           G  +A + + + LVD +I+Y +  ++G
Sbjct: 301 GPQLAGALLQAGLVDELIVYMAPKLLG 327


>gi|294667125|ref|ZP_06732350.1| 5-amino-6-uracil reductase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292603135|gb|EFF46561.1| 5-amino-6-uracil reductase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 369

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 120/328 (36%), Positives = 185/328 (56%), Gaps = 10/328 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D R+M+ ALR +      T  NP V C+IV+DG  +G G     G PHAEV AL  A
Sbjct: 9   SADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGACVGEGFHQRAGGPHAEVFALRAA 68

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPC+HYGR+PPCA  +IE G+ RVV  + DP  +V+G G   L + G
Sbjct: 69  GELARGATAYVTLEPCAHYGRTPPCALALIEAGVMRVVAAMADPFPQVNGGGFALLREAG 128

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I ++  +M+++ +     +L+R    R  + +K+  S D    +A   S  IT   ++  
Sbjct: 129 IDVLSGVMQAQARTLNRGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITSADARAD 188

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----PMRIILDPHFKLSLDSKIIK 238
           V   RA++ AIL G GTV+ADDP +T R+    E S    P+R++LD   + +L  + I+
Sbjct: 189 VQRWRARAGAILTGAGTVMADDPSMTVRMG---EDSPVVPPLRVVLDAGLR-TLACRNIR 244

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
               AP + +   D    +L   +     ++    DL  +L +L  RG+  + VEGGA +
Sbjct: 245 QG-DAPTLYLHGEDVSAPSLDDAQFLAMPLHAGRFDLAAVLALLAERGINEVHVEGGATL 303

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP 326
           + + + + LVD +++Y + +++G+   P
Sbjct: 304 SGALLQAGLVDELLVYMAPVLLGDSAKP 331


>gi|291524228|emb|CBK89815.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Eubacterium rectale DSM 17629]
          Length = 386

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 127/358 (35%), Positives = 187/358 (52%), Gaps = 40/358 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M  A+  ++  +G TS NP V  +IVKDG +IG G     G  HAE  AL+   E 
Sbjct: 3   DEQYMRRAIELAKRGMGYTSPNPMVGAVIVKDGRIIGEGWHERYGELHAERNALKHCKES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            +GA  YVTLEPC H+G+ PPC + +IE GI+RV V  DDP+  V+G G++ L + GI +
Sbjct: 63  PQGADMYVTLEPCCHHGKQPPCVEAVIEAGIKRVYVGSDDPNPLVAGGGIKILKEHGIEV 122

Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           V ++++ E      +F +   TR    R ++ +K A++ D  I      S  ITG  ++ 
Sbjct: 123 VTQVLKDECDRLNDVFFYFIQTR----RPYVAMKYAMTMDGKIATYSGLSKWITGEKARE 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V  LR +  AI+ GIGTVLADDP LTCR+ G    +P+RII D H KL L+S+I+ TA 
Sbjct: 179 HVQNLRHRYKAIMAGIGTVLADDPLLTCRIEGGV--NPIRIICDTHLKLPLESQIVNTAK 236

Query: 242 LAPVIIV----------------TENDDPVLALAFRK---------KNINIIYCDCR--- 273
             P I+                 TE D       ++K           I I+Y   +   
Sbjct: 237 EVPTIVAVSERYRETAHSEALPDTEKDSIEENNNYQKNRKITRLEENGIEILYVAEKNGH 296

Query: 274 -DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
            DL  L+  L  R + S+L+EGG  +  S + S +V+ +  Y +  + G     +P+E
Sbjct: 297 IDLNDLMQKLGERNIDSILLEGGGILNWSALKSGIVNKVYAYIAPKLFGGADAKTPIE 354


>gi|73748880|ref|YP_308119.1| riboflavin biosynthesis protein RibD [Dehalococcoides sp. CBDB1]
 gi|147669641|ref|YP_001214459.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Dehalococcoides sp. BAV1]
 gi|73660596|emb|CAI83203.1| riboflavin biosynthesis protein RibD [Dehalococcoides sp. CBDB1]
 gi|146270589|gb|ABQ17581.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Dehalococcoides sp. BAV1]
          Length = 365

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 121/322 (37%), Positives = 174/322 (54%), Gaps = 10/322 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           ++MS AL  ++  +G  S NPSV  +IVK+G V+G+G T   G  HAE+ AL++A E+A+
Sbjct: 2   KYMSQALSLAKLAIGQVSPNPSVGAVIVKNGEVVGQGFTQPPGGDHAEIVALKQAAEKAK 61

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127
           GAT YVTLEPC H GR+PPC   +I  GI+ V +   D +  VSG+G + L   GI V  
Sbjct: 62  GATLYVTLEPCCHQGRTPPCTGSVIASGIKEVYIATLDDNPLVSGKGKKELEDAGIKVHL 121

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            MME E +    AY          +T K A+S D   G     S  I+   S++  H +R
Sbjct: 122 GMMEREARQMNEAYFKHVTTGMPFVTAKYAMSLDGKTGTRTGDSKWISNEESRHFAHYIR 181

Query: 188 AQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
             SD I+ G+ T+L DDP LT R+N    G     P R+I+D + +  L S +       
Sbjct: 182 HISDVIMAGLNTILKDDPHLTARVNCGRGGTSHSQPTRVIIDDNGRAPLSSNVFHVP-GN 240

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYC-DCR---DLKKLLTILVGRGVTSLLVEGGAAVA 299
            ++ V +   P    A+ +    ++   D R   DLK LL  L   GVTS+LVEGG  V 
Sbjct: 241 TIVAVAKGLTPEEKQAYDEVGAKVVELPDERGLVDLKALLRYLGQNGVTSVLVEGGGIVL 300

Query: 300 HSFINSRLVDSIILYRSQIVIG 321
            S  + +LVD ++++ + I+IG
Sbjct: 301 GSLFDLKLVDKVLVFVAPIIIG 322


>gi|89097868|ref|ZP_01170755.1| riboflavin specific deaminase [Bacillus sp. NRRL B-14911]
 gi|89087370|gb|EAR66484.1| riboflavin specific deaminase [Bacillus sp. NRRL B-14911]
          Length = 371

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 128/323 (39%), Positives = 175/323 (54%), Gaps = 14/323 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  +R  +G TS NP V  ++VKDG + G G     G  HAEV A+  A   
Sbjct: 3   DEDYMDLALSLARKTIGQTSPNPCVGAVVVKDGQIAGMGAHLKAGTQHAEVHAIRMADGL 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGA  YVTLEPCSH+G++PPCA  IIE GI+RVV+   DP+  V+GRG+  L   GI V
Sbjct: 63  ARGAEIYVTLEPCSHHGKTPPCADLIIESGIKRVVIASIDPNPIVAGRGIAKLEAAGIEV 122

Query: 127 D---RMMESE--GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           +   R  E+E     F H   T     R ++T+K A S D         S  IT   S+ 
Sbjct: 123 EVGIRREEAEEINSAFFHFMRT----SRPYVTIKAAASFDGKTAANTGDSQWITSPESRE 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH LR + DAIL G+ TV+ D+P+LT RL    + +P+R+ILD   ++  D+ I+    
Sbjct: 179 DVHRLRHEHDAILTGVNTVIHDNPQLTARLPRGGK-NPIRVILDSTLRIPGDAAILHDQ- 236

Query: 242 LAPVIIVT-ENDDPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAV 298
            APVII T  N D   A   +     +++    ++   K+L  L  R + S+ VEGG+ +
Sbjct: 237 KAPVIIFTGSNYDNSKAEQIKALGTELVHFPEEEVPAGKVLEELGTRQILSVFVEGGSEI 296

Query: 299 AHSFINSRLVDSIILYRSQIVIG 321
             SFI   L   IILY +  +IG
Sbjct: 297 HASFIKEGLFQQIILYAAPKIIG 319


>gi|167031576|ref|YP_001666807.1| riboflavin biosynthesis protein RibD [Pseudomonas putida GB-1]
 gi|166858064|gb|ABY96471.1| riboflavin biosynthesis protein RibD [Pseudomonas putida GB-1]
          Length = 376

 Score =  195 bits (495), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 180/339 (53%), Gaps = 27/339 (7%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            DA +M+ AL  +R  +  T  NP V C+IV+DG V+G G     G PHAEV AL +AGE
Sbjct: 8   LDAHYMARALELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQAGE 67

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            A GA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV  + DP+ +V+G+GLQ L++ GI 
Sbjct: 68  RAIGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGLQRLAEAGIE 127

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   ++E+E +     +L R       +  K+A+S D    MA   S  ITG  +++ V 
Sbjct: 128 VASGVLETEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARSAVQ 187

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDS 234
            LRA+S  +L    +VLAD+  +T R   L             +P+R+++D   +L LD+
Sbjct: 188 RLRARSSVVLTSAASVLADNARMTVRGTELGLDAETTALALSRTPLRVLVDSRLRLPLDA 247

Query: 235 KIIKTALLAPVIIVTE-NDDPVLA------LAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
              +     P ++V    DDP  A      L+    N  +      DL  LL  L  RGV
Sbjct: 248 AFFQA---GPALVVAAVADDPRYAAAGHELLSLPGDNGQV------DLPALLQALAARGV 298

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
             +L+E GA +  +F    LVD   L+ +   +G    P
Sbjct: 299 NEILLEAGAGLVGAFAQQGLVDEYQLFVAGTFLGSQARP 337


>gi|70732823|ref|YP_262590.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens Pf-5]
 gi|68347122|gb|AAY94728.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens Pf-5]
          Length = 377

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 128/339 (37%), Positives = 178/339 (52%), Gaps = 28/339 (8%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            DA +M+ AL  +R     T  NP V C+IV+DG V+G G     G PHAEV AL  AGE
Sbjct: 10  LDAHYMARALELARKGRYSTHPNPRVGCVIVRDGQVVGEGWHVRAGEPHAEVHALRAAGE 69

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGLQ L+Q GI 
Sbjct: 70  LARGATAYVTLEPCSHHGRTPPCADALVNAGVARVVAAMQDPNPEVAGRGLQRLAQAGID 129

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
               ++E E +     +L R      ++ +K+A+S D    MA   S  ITG  +++ V 
Sbjct: 130 THGGVLEGEARAINKGFLKRMEHGLPYVRVKLAMSLDGRTAMASGESQWITGPAARSAVQ 189

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSLDS 234
            LRA+S  +L G  TVLADD  LT R   L              P+R+++D   ++ LD+
Sbjct: 190 RLRAESSVVLTGADTVLADDARLTVRAAELGLDAEQTALAMSRPPLRVLIDGRLRVPLDA 249

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC------DCR-DLKKLLTILVGRGV 287
              K     P ++ T         A  ++  N   C      D + DL++LL  L  RGV
Sbjct: 250 PFFKA---GPALVAT-------CAAVEEQYANGPECLIVPGPDGQVDLRRLLLELAARGV 299

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
             +LVE G  +A +F    LVD   ++ +   +G    P
Sbjct: 300 NEVLVEAGPRLAGAFAQQGLVDEYQIFVAGKFLGSSARP 338


>gi|83754218|pdb|2B3Z|A Chain A, Crystal Structure Of A Bifunctional Deaminase And
           Reductase Involved In Riboflavin Biosynthesis
 gi|83754219|pdb|2B3Z|B Chain B, Crystal Structure Of A Bifunctional Deaminase And
           Reductase Involved In Riboflavin Biosynthesis
 gi|83754220|pdb|2B3Z|C Chain C, Crystal Structure Of A Bifunctional Deaminase And
           Reductase Involved In Riboflavin Biosynthesis
 gi|83754221|pdb|2B3Z|D Chain D, Crystal Structure Of A Bifunctional Deaminase And
           Reductase Involved In Riboflavin Biosynthesis
 gi|83754933|pdb|2D5N|A Chain A, Crystal Structure Of A Bifunctional Deaminase And
           Reductase Involved In Riboflavin Biosynthesis
 gi|83754934|pdb|2D5N|B Chain B, Crystal Structure Of A Bifunctional Deaminase And
           Reductase Involved In Riboflavin Biosynthesis
 gi|83754935|pdb|2D5N|C Chain C, Crystal Structure Of A Bifunctional Deaminase And
           Reductase Involved In Riboflavin Biosynthesis
 gi|83754936|pdb|2D5N|D Chain D, Crystal Structure Of A Bifunctional Deaminase And
           Reductase Involved In Riboflavin Biosynthesis
 gi|211939446|pdb|3EX8|A Chain A, Complex Structure Of Bacillus Subtilis Ribg Reduction
           Mechanism In Riboflavin Biosynthesis
 gi|211939447|pdb|3EX8|B Chain B, Complex Structure Of Bacillus Subtilis Ribg Reduction
           Mechanism In Riboflavin Biosynthesis
 gi|211939448|pdb|3EX8|C Chain C, Complex Structure Of Bacillus Subtilis Ribg Reduction
           Mechanism In Riboflavin Biosynthesis
 gi|211939449|pdb|3EX8|D Chain D, Complex Structure Of Bacillus Subtilis Ribg Reduction
           Mechanism In Riboflavin Biosynthesis
          Length = 373

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 121/330 (36%), Positives = 170/330 (51%), Gaps = 12/330 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           S +  +M  AL  ++   G T +NP V  ++VKDG ++G G     G  HAEV A+  AG
Sbjct: 12  SMEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAG 71

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
             A GA  YVTLEPCSHYG++PPCA+ II  GI+RV V + DP+  V+GRG+  + + GI
Sbjct: 72  AHAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGI 131

Query: 125 -----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
                I+    E   + FLH   T       ++TLK A S D  I  +   S  IT   +
Sbjct: 132 EVREGILADQAERLNEKFLHFMRT----GLPYVTLKAAASLDGKIATSTGDSKWITSEAA 187

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +      R    +ILVG+GTV AD+P LTCRL  + +  P+R+ILD    +  D+K+I  
Sbjct: 188 RQDAQQYRKTHQSILVGVGTVKADNPSLTCRLPNVTKQ-PVRVILDTVLSIPEDAKVICD 246

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAA 297
            +    I  T   D           +NI   +   ++   +L IL   G+ S+ VEGG+A
Sbjct: 247 QIAPTWIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSA 306

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           V  SF+       II Y +  +IG    PS
Sbjct: 307 VHGSFVKEGCFQEIIFYFAPKLIGGTHAPS 336


>gi|26522770|dbj|BAC44857.1| pyrimidine deaminase/ pyrimidine reductase [Vibrio fischeri]
          Length = 372

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/341 (36%), Positives = 186/341 (54%), Gaps = 24/341 (7%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  ++ D   M  A+  ++  +  T+ NP+V C++VKDG ++G G     G PHAEV AL
Sbjct: 1   MTFTTQDHLMMQKAILLAKQGIYTTAPNPNVGCVLVKDGKIVGEGAHLKAGEPHAEVHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AG+EA+GATAYVTLEPCSHYGR+PPCA+ +I+ G+++V+  + DP+ +V+GRGL  L+
Sbjct: 61  RQAGKEAQGATAYVTLEPCSHYGRTPPCAEGLIKAGVKKVICAMVDPNPQVAGRGLAMLN 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI     ++E++ +     +LTR    +  + LK+A S D    +    S  IT   +
Sbjct: 121 EAGIETASGLLEADARALNPHFLTRMETGKPFVQLKMAASLDGKTALKNGVSQWITSKEA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----QE-------HSPMRIILDPHF 228
           +  V   RAQS AI     TV+ D+  L  R + L    QE         PMR ILD   
Sbjct: 181 RQDVQRYRAQSGAIFSTAKTVIDDNASLNVRWSDLPPSIQESYQQAAIRQPMRFILDRQH 240

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLT-ILV 283
            L+ D K+ + A    V I ++N  P++       + N I C    D  +LK+++  I  
Sbjct: 241 ALTSDLKLFQ-ASGEVVTISSQNTHPIVT------SENHIQCCVDDDQLNLKEVVNKISR 293

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
              V  + VE GA +A S I   LVD +I+Y +  ++G  G
Sbjct: 294 DFNVNHIWVEAGATLAASMIKENLVDELIIYLAPKLMGADG 334


>gi|238925477|ref|YP_002938994.1| riboflavin biosynthesis protein [Eubacterium rectale ATCC 33656]
 gi|238877153|gb|ACR76860.1| riboflavin biosynthesis protein [Eubacterium rectale ATCC 33656]
          Length = 394

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 127/358 (35%), Positives = 187/358 (52%), Gaps = 40/358 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M  A+  ++  +G TS NP V  +IVKDG +IG G     G  HAE  AL+   E 
Sbjct: 9   DEQYMRRAIELAKRGMGYTSPNPMVGAVIVKDGRIIGEGWHERYGELHAERNALKHCKES 68

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            +GA  YVTLEPC H+G+ PPC + +IE GI+RV V  DDP+  V+G G++ L + GI +
Sbjct: 69  PQGADMYVTLEPCCHHGKQPPCVEAVIEAGIKRVYVGSDDPNPLVAGGGIKILKEHGIEV 128

Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           V ++++ E      +F +   TR    R ++ +K A++ D  I      S  ITG  ++ 
Sbjct: 129 VTQVLKDECDRLNDVFFYFIQTR----RPYVAMKYAMTMDGKIATYSGLSKWITGEKARE 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V  LR +  AI+ GIGTVLADDP LTCR+ G    +P+RII D H KL L+S+I+ TA 
Sbjct: 185 HVQNLRHRYKAIMAGIGTVLADDPLLTCRIEGGV--NPIRIICDTHLKLPLESQIVNTAK 242

Query: 242 LAPVIIV----------------TENDDPVLALAFRK---------KNINIIYCDCR--- 273
             P I+                 TE D       ++K           I I+Y   +   
Sbjct: 243 EVPTIVAVSERYHETAQSEALPDTEKDSIEENNNYQKNRKITRLEENGIEILYVAEKNGH 302

Query: 274 -DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
            DL  L+  L  R + S+L+EGG  +  S + S +V+ +  Y +  + G     +P+E
Sbjct: 303 IDLNDLMQKLGERSIDSILLEGGGILNWSALKSGIVNKVYAYIAPKLFGGADAKTPIE 360


>gi|170725743|ref|YP_001759769.1| riboflavin biosynthesis protein RibD [Shewanella woodyi ATCC 51908]
 gi|169811090|gb|ACA85674.1| riboflavin biosynthesis protein RibD [Shewanella woodyi ATCC 51908]
          Length = 379

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/344 (34%), Positives = 186/344 (54%), Gaps = 23/344 (6%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S  D   MS A++ +R  +  T  NP V C++ KDG ++G G     G PHAEV AL
Sbjct: 1   MNWSVEDIEMMSRAIKLARQGLYTTQPNPCVGCVVTKDGQILGEGFHIKAGGPHAEVHAL 60

Query: 61  EEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
             A  +    A+GATAYVTLEPCSHYGR+PPCA+ +I   + RVVV V+DP+ +V GRG+
Sbjct: 61  AMANSDSNLGAKGATAYVTLEPCSHYGRTPPCAEALIHNKLARVVVAVEDPNPQVCGRGI 120

Query: 117 QWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
             L   GI VD  +++ E       ++ R       +T+K+A S D    +A   S  IT
Sbjct: 121 AMLRDAGIQVDVGLLQDEAYKINPGFMKRMETGLPWVTVKLASSLDGKTALANGASKWIT 180

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILD 225
           G  ++  V  LRA+  A++ G+ T+LAD+P L  R + L            H P+R++LD
Sbjct: 181 GPEARRDVQRLRARHCALVTGVETILADNPSLNVRHSELGSLADRHSESDLHQPLRVVLD 240

Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLT 280
              +++ D  +   A+ +P+++V+ +D P +       ++  +  +C      DL +L  
Sbjct: 241 SRARVTSDLALF--AIESPILLVSCDDYPAIEQQSWPSHVKQVKLNCDESGRVDLNELFK 298

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            L G+   S+L+E GA +A S I     D ++LY++  ++G  G
Sbjct: 299 YL-GKQCNSVLIEAGATLAGSVIAKGHGDELVLYQALKMLGSSG 341


>gi|292487445|ref|YP_003530317.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Erwinia amylovora CFBP1430]
 gi|292898687|ref|YP_003538056.1| riboflavin biosynthesis protein RibD [Erwinia amylovora ATCC 49946]
 gi|291198535|emb|CBJ45643.1| riboflavin biosynthesis protein RibD [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase]
           [Erwinia amylovora ATCC 49946]
 gi|291552864|emb|CBA19909.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Erwinia amylovora CFBP1430]
          Length = 367

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/333 (36%), Positives = 179/333 (53%), Gaps = 20/333 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL  +R     T+ NP+V C++V+D  ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEAYMARALELARRGRFTTTPNPNVGCVLVRDDQIVGEGYHMRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           +RGATAYVTLEPCSH+GR+PPC + +I  G++RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  SRGATAYVTLEPCSHHGRTPPCCEALIAAGVKRVVTAMQDPNPQVAGRGLYRLQQAGIEV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M  E +     +L R       + LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMPEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPEARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLAD+P LT R + L   S           P+R+I+D   +++   
Sbjct: 183 LRAQSSAILSTSATVLADNPALTVRHDELDRASLADYPVDLLRQPVRVIVDSQNRVTPRH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINII---YCDCRDLKKLLTILVGRGVTSLL 291
           ++I        +  T  DD    L +      ++   Y D  DL  +L +L  + + SL 
Sbjct: 243 RLISQPGET-WLARTAGDD----LDWPDNVSQLMVPRYQDRLDLVAMLMLLGRKQINSLW 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           VE GA  A + + + +VD +I+Y +  ++G+ G
Sbjct: 298 VEAGAQFAGALLQAGVVDELIVYLAPKLLGDAG 330


>gi|225077298|ref|ZP_03720497.1| hypothetical protein NEIFLAOT_02357 [Neisseria flavescens
           NRL30031/H210]
 gi|224951442|gb|EEG32651.1| hypothetical protein NEIFLAOT_02357 [Neisseria flavescens
           NRL30031/H210]
          Length = 370

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/327 (37%), Positives = 186/327 (56%), Gaps = 9/327 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D + M  AL  ++     TS NP V C+I     ++G+G     G PHAEV AL +A
Sbjct: 3   SALDTQMMQTALELAKLGRFSTSPNPRVGCVIAHGAQIVGQGFHVKAGEPHAEVHALRQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G  A+GATAYVTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   G
Sbjct: 63  GAAAKGATAYVTLEPCSHYGRTPPCAEALVHSGVTRVVAAMTDPNPLVAGKGLSMLEAAG 122

Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  ++E++ +     +L+R    R  + LK A S D    ++   S  ITG  ++  
Sbjct: 123 IRTESGLLEAQARELNRGFLSRIERGRPFVRLKCAASLDGKTALSDGRSFWITGEAARKD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V +LRA+S A+L GIGTVLAD+P+L  R    L++  P RI+LD   ++ LD  ++    
Sbjct: 183 VQILRAESCAVLTGIGTVLADNPKLNVRSFPTLRQ--PARIVLDSRLQIPLDCHLVTDTE 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINII----YCDCR-DLKKLLTILVGRGVTSLLVEGGA 296
              VI+   +D+  L      ++I II    + + R +L  L+  L   G   +LVE G+
Sbjct: 241 SPTVIVTLSSDEQRLQALSAFEHIRIIRPSEHINGRINLLSLMPQLAELGFGEVLVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +A +F+   LVD I+LY++  ++G G
Sbjct: 301 TLASAFLKDDLVDEIVLYQAPKLLGAG 327


>gi|238918989|ref|YP_002932503.1| riboflavin biosynthesis protein RibD, [Edwardsiella ictaluri
           93-146]
 gi|238868557|gb|ACR68268.1| riboflavin biosynthesis protein RibD, putative [Edwardsiella
           ictaluri 93-146]
          Length = 373

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/334 (36%), Positives = 179/334 (53%), Gaps = 22/334 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     T+ NP+V C++V+D  ++G G     G PHAEV AL  AGE+
Sbjct: 9   DEFYMARAFELARRGRFTTTPNPNVGCVLVRDDRIVGEGFHLRAGEPHAEVLALRMAGEQ 68

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q GI V
Sbjct: 69  ARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPHVAGRGLYRLQQAGIAV 128

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R      ++ LK+  S D    MA   S  IT   ++  V  
Sbjct: 129 QHGLMLAEAEAINKGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSAAARADVQR 188

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP LT R + L E +           P+R+I+D H +++   
Sbjct: 189 YRAQSSAILSSSATVLADDPALTVRWDSLDEDTQRLYPREHLRQPLRVIVDSHNRVTPQH 248

Query: 235 KIIKT---ALLAPVIIVTENDDP-VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
            ++      LLA +   T++  P V  LA  +    +      DL  L+  L    + S+
Sbjct: 249 GLVAQPGETLLARIDPDTQDWPPSVSQLAVPRHGEGL------DLVLLMMQLGKMQLNSV 302

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            VE G  +A + + + LVD +I+Y + +++G+  
Sbjct: 303 WVEAGPRLAGALLQAGLVDELIVYLAPMLLGDAA 336


>gi|269837993|ref|YP_003320221.1| riboflavin biosynthesis protein RibD [Sphaerobacter thermophilus
           DSM 20745]
 gi|269787256|gb|ACZ39399.1| riboflavin biosynthesis protein RibD [Sphaerobacter thermophilus
           DSM 20745]
          Length = 387

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 126/372 (33%), Positives = 196/372 (52%), Gaps = 17/372 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           V + D  +M  AL  +    G  + NP+V  ++V+DG ++G G T      HAE+ AL +
Sbjct: 9   VPATDLHWMRRALDLAASARGRVAPNPAVGAVLVRDGRLVGEGATEPPPGAHAEIVALRQ 68

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  ARGAT YVTLEPC+HYGR+PPC   +I  GI R VV + DP   V+GRGL+ L++ 
Sbjct: 69  AGALARGATLYVTLEPCAHYGRTPPCVDALIAAGIARAVVALRDPYPAVNGRGLRLLAEA 128

Query: 123 GIIVDRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ V+  + +     ++A   ++V      +T K AVS D  I      +  ITG  ++ 
Sbjct: 129 GVRVELGLAAGAAAAINAGFLKRVHCGLPEVTAKFAVSLDGKIATHTGHARWITGAEARR 188

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-----NGLQEHSPMRIILDPHFKLSLDSKI 236
           + H LR   DAI+VGIGT+LADDP LT RL          H P+R+++D   +    + +
Sbjct: 189 EGHRLRDTHDAIMVGIGTLLADDPLLTTRLPPEDCGAGGPHHPLRVVVDSQARTPPGAAM 248

Query: 237 IKTALLAPVIIVTENDDPVLAL-AFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291
           ++  +    ++ T +  P   + A R    +++         DL  LL  L  RGV S+L
Sbjct: 249 LQPHMPGRTLLATTSSAPPERIAALRAVGADVVTLPDHGGRVDLHALLRCLAARGVNSVL 308

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL-EEGYLEKNFMCVRRDYFGSDV 350
           VEGG  +  +  ++ L+D  + + + +++G    P PL  EG    +  C  R+    +V
Sbjct: 309 VEGGGTLLGALFDAGLIDRAVAFIAPVMVGGRDAPGPLGGEGVATMDAACRLREV---EV 365

Query: 351 CLEYIGKNLCLQ 362
           C   +G +L +Q
Sbjct: 366 C--QVGSDLMVQ 375


>gi|281491487|ref|YP_003353467.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Lactococcus lactis subsp. lactis KF147]
 gi|281375205|gb|ADA64718.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase/
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Lactococcus lactis subsp. lactis KF147]
          Length = 362

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 124/365 (33%), Positives = 197/365 (53%), Gaps = 28/365 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++   G  + NP V  LIVK+G +IG+G     G  HAE+ A ++  E 
Sbjct: 4   DEYYMDLAIVLAKKGGGNVNPNPQVGALIVKEGRIIGQGYHEKYGEAHAEINAFKDCNES 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-- 124
             GAT YVTLEPC+H G+ PPC + II+  I+RVV+   DP+  VSG+G++ + + GI  
Sbjct: 64  PEGATLYVTLEPCAHQGKQPPCFEAIIKNRIKRVVIGHLDPNPLVSGKGIKAMKEAGIEV 123

Query: 125 ---IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
              ++++  E   KIF + Y+++ +    ++ +K A++ D  I  +   S  ITG I++ 
Sbjct: 124 SINVLEKECEELNKIFFY-YVSQGL---PYVMMKYAMTLDGKIATSAGQSKWITGEIARQ 179

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
           +VH  R++  AI++G+ T++ DDP+L+ RL NG    +P+RII D H +  L SKI+ TA
Sbjct: 180 KVHQDRSRFMAIMIGVETLILDDPQLSVRLENG---KNPIRIICDTHLRSPLASKIVSTA 236

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGA 296
                II T   DP     F K    II   C +    LK+L   L  +G+ S+++EGG 
Sbjct: 237 SEISTIIATAESDPEKQAPFLKVGCEIILVSCLEGRLNLKELTKKLGEKGIDSIILEGGG 296

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE--------EGYLEKNFMCVRRDYFGS 348
            +  S + + ++  +  Y +  + G    PSP+E        + YL       +  Y G 
Sbjct: 297 TLNASALKAGIIQKVQTYIAPKIFGGKEAPSPVEGHGIEHPNQAYL---LEGAQITYLGE 353

Query: 349 DVCLE 353
           D+ LE
Sbjct: 354 DILLE 358


>gi|289432876|ref|YP_003462749.1| riboflavin biosynthesis protein RibD [Dehalococcoides sp. GT]
 gi|288946596|gb|ADC74293.1| riboflavin biosynthesis protein RibD [Dehalococcoides sp. GT]
          Length = 365

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 121/322 (37%), Positives = 174/322 (54%), Gaps = 10/322 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           ++MS AL  ++  +G  S NPSV  +IVK+G V+G+G T   G  HAE+ AL++A E+A+
Sbjct: 2   KYMSQALSLAKLAIGQVSPNPSVGAVIVKNGEVVGQGFTQPPGGDHAEIVALKQAAEKAK 61

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127
           GAT YVTLEPC H GR+PPC   +I  GI+ V +   D +  VSG+G + L   GI V  
Sbjct: 62  GATLYVTLEPCCHQGRTPPCTGSVIASGIKEVYIATLDDNPLVSGKGKKELEAAGIKVHL 121

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            MME E +    AY          +T K A+S D   G     S  I+   S++  H +R
Sbjct: 122 GMMEREARQMNEAYFKHVTTGMPFVTAKYAMSLDGKTGTRTGDSKWISNEESRHFAHYIR 181

Query: 188 AQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
             SD I+ G+ T+L DDP LT R+N    G     P R+I+D + +  L S +       
Sbjct: 182 HISDVIMAGLNTILKDDPHLTARVNCGRGGTSHSQPTRVIIDDNGRAPLSSNVFHVP-GN 240

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYC-DCR---DLKKLLTILVGRGVTSLLVEGGAAVA 299
            ++ V +   P    A+ +    ++   D R   DLK LL  L   GVTS+LVEGG  V 
Sbjct: 241 TIVAVAKGLTPEEKQAYDEVGAKVVELPDERGLVDLKALLRYLGQNGVTSVLVEGGGIVL 300

Query: 300 HSFINSRLVDSIILYRSQIVIG 321
            S  + +LVD ++++ + I+IG
Sbjct: 301 GSLFDLKLVDKVLVFVAPIIIG 322


>gi|239627638|ref|ZP_04670669.1| riboflavin synthase subunit alpha [Clostridiales bacterium
           1_7_47_FAA]
 gi|239517784|gb|EEQ57650.1| riboflavin synthase subunit alpha [Clostridiales bacterium
           1_7_47FAA]
          Length = 370

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 121/329 (36%), Positives = 180/329 (54%), Gaps = 16/329 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  +    G  + NP V  +IV+DG VIG+G   + G PHAE  AL+     
Sbjct: 6   DNIYMGRALALAAKGEGRVNPNPLVGAVIVRDGAVIGQGYHGFYGGPHAERAALDSLTAP 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GA  YVTLEPC HYG++PPC   II+ GIRRVV+   DP+  V+G+G+  L   GI +
Sbjct: 66  AKGAVLYVTLEPCCHYGKTPPCTDAIIKSGIRRVVIGAMDPNPLVAGKGIAALKSHGIEV 125

Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           +  ++E E     ++F H   TRQ     ++ +K A++ D     +G  S  ITG  ++ 
Sbjct: 126 IQGVLEEECIRQNEVFFHFIRTRQ----PYVVMKYAMTMDGRTATSGRLSRWITGEQARE 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH  R +  A++ G+GT+LADDP+LTCR+ G    +P+RII D      L S +++TA 
Sbjct: 182 HVHKTRNRLSAVMTGLGTILADDPQLTCRIPG--GRNPVRIICDTRLMTPLTSNVVRTAP 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
               I+ T   DP     F+     I+    R    DL+ L+  L G  + S+L+EGG+A
Sbjct: 240 HVRTILATCCQDPAAMAPFKDAGCEILILPERDGHTDLRFLMERLGGMDIDSVLLEGGSA 299

Query: 298 VAHSFINSRLVDSIILY-RSQIVIGEGGI 325
           +  S ++  +V  +  Y   +I  GE G+
Sbjct: 300 LNWSALDQGIVHKLQAYIAPKIFGGEKGL 328


>gi|307546181|ref|YP_003898660.1| riboflavin biosynthesis protein RibD [Halomonas elongata DSM 2581]
 gi|307218205|emb|CBV43475.1| riboflavin biosynthesis protein RibD [Halomonas elongata DSM 2581]
          Length = 384

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/338 (35%), Positives = 184/338 (54%), Gaps = 18/338 (5%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           R+M+ ALR +R  +  T+ NP V C++VK+G VIG G     G PHAE+ AL  AGE AR
Sbjct: 9   RWMARALRLARHGLYTTAPNPRVGCVLVKEGRVIGEGWHERAGEPHAEIHALRNAGEAAR 68

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           GATAYVTLEPCSH GR+ PCA  ++E G+ RVVV + DP+ +V+GRG++ L Q GI V+ 
Sbjct: 69  GATAYVTLEPCSHQGRTGPCAVALVEAGVARVVVAMRDPNPQVAGRGIERLRQAGIEVEE 128

Query: 129 -MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++E+E       ++ R    R  + +K+A+S D    M    S  ITG  ++ +V  LR
Sbjct: 129 GVLEAEAHALNSGFIARMARGRPFVRMKMAMSLDGRTAMRSGESQWITGPCARREVQRLR 188

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQ--------EHSPMRIILDPHFKLSLDSKIIKT 239
           A+S  ++ G+ +V+ D+  LT R   L+           PMR+++D   +L L +  ++ 
Sbjct: 189 ARSSVVMTGVESVIFDNSRLTVRAEQLELDNAEAIASRQPMRVVVDSRLRLPLAAACLRE 248

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVG-RGVTSLLVE 293
                V  V  +DD        +    ++          DL+ LL+ L        +L+E
Sbjct: 249 PGRTLVATVDGHDDEHRE-KLEQAGAEVVVLPAEEGGRVDLEALLSYLASHEEANEVLLE 307

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
            GA +A + +++ LVD + L+ +  ++  GG   PL E
Sbjct: 308 TGATLAGAMLDAGLVDEMQLFVAPTLL--GGEARPLFE 343


>gi|116748817|ref|YP_845504.1| riboflavin biosynthesis protein RibD [Syntrophobacter fumaroxidans
           MPOB]
 gi|116697881|gb|ABK17069.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 363

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 126/363 (34%), Positives = 190/363 (52%), Gaps = 30/363 (8%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  ALR +    G TS NP V  ++V+    +  G   + G PHAEV AL +AG++ARGA
Sbjct: 1   MKRALRLAAKGAGRTSPNPMVGAVVVRGETTVAEGFHEFVGGPHAEVNALRQAGDKARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
           T YVTLEPC+H GR+PPC + +++ G+  VV+ ++DP+  V G G  +L   G+ V   +
Sbjct: 61  TLYVTLEPCNHQGRTPPCTRAVLDSGVATVVIGMEDPNPGVRGGGASFLRSHGLRVHAGI 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E E +     ++        ++TLK AV+ D  I  +   S  I+   S+   H LR  
Sbjct: 121 LEKECRALNQPFIKHVTTGLPYVTLKAAVTLDGAIASSSGDSKWISNERSRKFAHHLRCI 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           SD +L+GIGT LADDP L+ R+        P+RI+LD   +L L+S +++TA   P+++V
Sbjct: 181 SDGVLIGIGTALADDPLLSARIKRRPACRQPVRIVLDSRLRLPLESALVRTAAEFPLMVV 240

Query: 249 TENDDP-------------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
              D P             V+ L+  K  I+        L +LL  L  +G+ SLLVEGG
Sbjct: 241 CGRDAPPTREKALVDAGAEVMRLSSGKGGIH--------LPELLRALGSKGLCSLLVEGG 292

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF------MCVRRDYFGSD 349
           A V  +F+++ L D    + +  V+G+    +P+  G   +          VR   FG D
Sbjct: 293 ATVLGAFLDNGLADDFHFFYAPKVLGDPA-GTPMVRGRGRERMADAVPVFDVRVRRFGED 351

Query: 350 VCL 352
           V L
Sbjct: 352 VML 354


>gi|194336939|ref|YP_002018733.1| riboflavin biosynthesis protein RibD [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309416|gb|ACF44116.1| riboflavin biosynthesis protein RibD [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 366

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 128/361 (35%), Positives = 198/361 (54%), Gaps = 19/361 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  AL  +    G  S NP V  +IV DG +IG G     G PHAEV A+    +E
Sbjct: 6   DLFFMRRALELAVLGAGSVSPNPMVGAVIVCDGEIIGEGYHQQFGGPHAEVHAIASVEDE 65

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           A    +T YVTLEPCSH+G++PPC+  I+E GI RVV+   DP V+V+G+G+  L   GI
Sbjct: 66  ALLHHSTLYVTLEPCSHFGKTPPCSDLIVEKGIPRVVIGCRDPHVKVAGKGIAKLQAAGI 125

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            + + ++E+E      A++         + LK+A + D  I  +   S  ITG  S+++V
Sbjct: 126 RVTEGVLEAECIGCNEAFIKSHTTGLPFVCLKLAQTLDGKIATSLGASRWITGEESRSEV 185

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H LR+  DA++VG  TV ADD +LT R       +P R++LD   +L L+SKI  +   A
Sbjct: 186 HRLRSIYDAVMVGEATVRADDAQLTVR--NCSGRNPQRVVLDSQLRLPLESKIFGSE--A 241

Query: 244 PVIIVTEND---DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
           P I+V        P +A   R++ + +++ D      DL++ L  L  RG+ S+LVEGG+
Sbjct: 242 PTIVVASTSFSASPKVA-QLRERGVTVLFVDEHVGKLDLRQALVELHKRGILSVLVEGGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCVRRDYFGSDVCL 352
            ++ +F+  +LVD I+++ +  + G   +   +PL     ++  +    R  +FG D+ L
Sbjct: 301 RLSAAFVREKLVDKILIFVAPKLFGGDALSAFAPLGVSMPDQAVDLRFGRPHFFGHDLLL 360

Query: 353 E 353
           E
Sbjct: 361 E 361


>gi|260596783|ref|YP_003209354.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Cronobacter turicensis z3032]
 gi|260215960|emb|CBA28583.1| Riboflavin biosynthesis protein ribD [Cronobacter turicensis z3032]
          Length = 367

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/327 (37%), Positives = 171/327 (52%), Gaps = 14/327 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ +      T  NP V C+IV DG+++G G     G PHAEV AL  AG++
Sbjct: 3   DEFYMARALKLASQGRFTTHPNPRVGCVIVNDGVIVGEGFHLRAGEPHAEVHALRMAGDK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q G+ V
Sbjct: 63  ARGATAYVTLEPCSHHGRTPPCCDALINAGVARVVAAMQDPNPQVAGRGLYRLQQAGVEV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R       I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPFIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
           LRA+S AIL    TVLADDP +T R + L E             P+RI+LD   +++   
Sbjct: 183 LRAESHAILTTSATVLADDPSMTVRWDELGEATQAVYPRENLRQPLRIVLDRQNQVTPAH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           KI+         +     D  +     ++    ++    DL  L+  L  R V SL VE 
Sbjct: 243 KIVNQP--GETWLARACPDDAVWPEGVEQLPTPVHNGKLDLVLLMMQLGKRQVNSLWVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321
           G  +A + + + LVD +I+Y +  ++G
Sbjct: 301 GPQLAGALLQAGLVDELIVYMAPKLLG 327


>gi|307256427|ref|ZP_07538209.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306865057|gb|EFM96958.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 364

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/363 (33%), Positives = 198/363 (54%), Gaps = 20/363 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++  +G T+ NP V C+IVK+G ++  G     G  HAE  A+    E+
Sbjct: 3   DLDYMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLHCKED 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GATAYVTLEPC H+GR+PPC+  +IE GI++V +   DP+  V+GRG   L Q G+ +
Sbjct: 63  LSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGAGQLRQAGVEV 122

Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           V+ +++ E      IF H   T    KR ++ +K A++ D  I      S  ITG +++ 
Sbjct: 123 VEGLLKEECDALNPIFFHYIQT----KRPYVLMKYAMTADGKIATGTGESKWITGELARA 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +V   R Q  AI+VG+ TVLAD+P L  R+   ++  P+RI+ D   +  LD ++++TA 
Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQ--PVRIVCDSQLRTPLDCQLVQTAK 236

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
               +I T +DD      FR   ++++ C  R    DL+ LL  L    + SLL+EGG++
Sbjct: 237 EYRTVIATVSDDLQKIEQFRPLGVDVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352
           +  S + S +V+ +  Y +  ++G     +P+    +++    V+      +  G D+ L
Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356

Query: 353 EYI 355
           +Y+
Sbjct: 357 DYV 359


>gi|238897276|ref|YP_002922953.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
           reductase (C-terminal) [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229465031|gb|ACQ66805.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
           reductase (C-terminal) [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 392

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 118/330 (35%), Positives = 178/330 (53%), Gaps = 15/330 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +MS ALR +      T+ NP+V C++V+ G V+G G     G PHAE+ AL++AG  
Sbjct: 14  DEFYMSYALRLASLGRFTTTPNPNVGCVLVRHGQVVGEGYHLRLGEPHAEIHALQKAGRL 73

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+G+ AY+TLEPC HYG++PPC + +I+ G+RRVVV ++DP+  ++GRGL  L Q GI +
Sbjct: 74  AKGSVAYITLEPCCHYGKTPPCVEALIKAGVRRVVVAIEDPNPEIAGRGLYQLKQAGIEV 133

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++ +E +     +L R      +I LK+A S D    MA   S  IT   S+  V  
Sbjct: 134 TSGILSTEAQDLNPGFLKRMRTGLPYIQLKMACSLDGRTAMASGESQWITSEQSRQDVQF 193

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
            RAQS AIL    TV AD+P LT R   L + +           P+RIILD H K++   
Sbjct: 194 FRAQSSAILSTGVTVSADNPALTVRWESLPKKTQALYPQESLRQPVRIILDRHHKVTPQH 253

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLL 291
           ++++      +I    +         +    +I + D +   DL  L+T L  R +  + 
Sbjct: 254 QVVQQPGTCWLIRTKTDHQDWPNQVEQWIFSSIQWPDKKNAIDLGSLMTALAKREMNLIW 313

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           VE GA +A   + + LVD +ILY +  ++G
Sbjct: 314 VEAGAELAGGLLEAGLVDELILYMAPKLLG 343


>gi|66047689|ref|YP_237530.1| riboflavin biosynthesis protein RibD:riboflavin-specific deaminase,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63258396|gb|AAY39492.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
          Length = 366

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 128/338 (37%), Positives = 179/338 (52%), Gaps = 33/338 (9%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL  +R  +  T  NP V C+IV++G ++G G  A  G PHAEV AL +AGE ARGA
Sbjct: 1   MARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQAGELARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129
           TAYVTLEPCSH GR+PPCA  +IE G+ RVV  + DP+  VSGRGL  L   GI V   +
Sbjct: 61  TAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNAGIGVQCGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +ESE +     +L R      ++ +K+A+S D    MA   S  ITG  +++ V  LRAQ
Sbjct: 121 LESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSAVQRLRAQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSLDSKIIKT 239
           S  +L G  TVLAD   LT R + L             +P+R+++D   ++ LD+   + 
Sbjct: 181 SSVVLSGADTVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLRVPLDAPFFQA 240

Query: 240 ALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
                 ++VT           E    +LALA    ++        DL++L+  L  RGV 
Sbjct: 241 ---GSALVVTCAAASARGRYQEEGHEMLALADSAGHV--------DLRRLMDELAARGVN 289

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            +LVE G  +A +F    LVD   L+ +   +G    P
Sbjct: 290 EVLVEAGPRLAGAFARLGLVDEFQLFIAGKFLGSSARP 327


>gi|320538258|ref|ZP_08038144.1| riboflavin biosynthesis protein RibD [Treponema phagedenis F0421]
 gi|320144885|gb|EFW36615.1| riboflavin biosynthesis protein RibD [Treponema phagedenis F0421]
          Length = 362

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/336 (36%), Positives = 177/336 (52%), Gaps = 29/336 (8%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL+F++   G TS NP V  +IVK+G +IG G     G PHAE  AL    E   GA
Sbjct: 1   MRTALQFAKKGAGWTSPNPMVGAVIVKNGKIIGSGFHERYGEPHAERNALRACTETPAGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           T YVTLEPC H+G+ PPC   ++E GI RVV+   DP+  V G+G++ L + GI V   +
Sbjct: 61  TLYVTLEPCCHHGKQPPCVDAVLESGITRVVIGSADPNPLVGGKGVRRLKESGIEVSENI 120

Query: 131 ESE-----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
             E      ++F H   T    KR  + +K A++ D  I      S  IT   ++  VHL
Sbjct: 121 LKEECDRLNEVFFHYIQT----KRPFVVMKYAMTMDGKIAAVTGNSKWITEEKAREHVHL 176

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R +  AI+VG+GTVLADDP LTCR+   +  +P+RII D + +  L ++II+TA   P 
Sbjct: 177 QRHRYTAIMVGVGTVLADDPLLTCRIKDGK--NPIRIICDTNLRTPLSAQIIRTAKKVPT 234

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR-----------DLKKLLTILVGRGVTSLLVEG 294
           II T           ++K    ++  CR           DL+ L+ +L    + SLL+EG
Sbjct: 235 IIAT-------CCTEKEKQFAYLHAGCRILTVPEKNGRVDLQNLMPMLGEEKIDSLLLEG 287

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           G  +  + + S +V  +  Y +  ++G     +P+E
Sbjct: 288 GGTLNWAALESGIVQKVHAYIAPKLLGGQSAKTPVE 323


>gi|167855405|ref|ZP_02478171.1| formyltetrahydrofolate deformylase [Haemophilus parasuis 29755]
 gi|167853471|gb|EDS24719.1| formyltetrahydrofolate deformylase [Haemophilus parasuis 29755]
          Length = 363

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 116/329 (35%), Positives = 186/329 (56%), Gaps = 15/329 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM+ A+  +    G T+ NP V C+IVKDG ++  G     G  HAE +A+    E+  G
Sbjct: 6   FMARAIELAELGRGWTNPNPLVGCVIVKDGNIVAEGYHQRYGEWHAERKAILHCQEDLSG 65

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           ATAYVTLEPC H+GR+PPC+  +IE GI+ VV+   DP+  V+G+G+  L Q GI +++ 
Sbjct: 66  ATAYVTLEPCCHHGRTPPCSDLLIERGIKTVVIGSSDPNPLVAGKGVAQLRQAGIEVIEN 125

Query: 129 MMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +M++E      IF H   T    KR ++ +K A++ D  I  A   +  ITG  ++  V 
Sbjct: 126 VMKAECDALNPIFFHYIQT----KRPYVLMKYAMTADGKIATATGEAKWITGEQARANVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             R Q  AI+VG+ TVLAD+P L  R+   ++  P+RI+ D   +  L+ ++++TA    
Sbjct: 182 CTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQ--PVRIVCDSRLRTPLECQLVQTAKTYR 239

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300
            II T +DD      F+   + ++ C  +    DL  LL  L  +G+ SLL+EGG+++  
Sbjct: 240 TIIATVSDDLQKIAQFQPLGVEVLVCKAKDKRIDLADLLQKLGDQGIDSLLLEGGSSLNF 299

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPL 329
           S +N+ +V+ +  Y +  ++G     +P+
Sbjct: 300 SALNAGIVNRVHCYIAPKLVGGVTAKTPI 328


>gi|190149675|ref|YP_001968200.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|189914806|gb|ACE61058.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
          Length = 379

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 123/373 (32%), Positives = 200/373 (53%), Gaps = 24/373 (6%)

Query: 1   MPVSSF----DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAE 56
           +P +SF    D  +M  A+  ++  +G T+ NP V C+IVK+G ++  G     G  HAE
Sbjct: 8   LPSNSFKTMTDLDYMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAE 67

Query: 57  VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
             A+    E+  GATAYVTLEPC H+GR+PPC+  +IE GI++V +   DP+  V+GRG 
Sbjct: 68  RNAVLHCKEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGA 127

Query: 117 QWLSQKGI-IVDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS 171
             L Q G+ +V+ +++ E      IF H   T    KR ++ +K A++ D  I      S
Sbjct: 128 NQLRQAGVEVVEGLLKEECDALNPIFFHYIQT----KRPYVLMKYAMTADGKIATGSGES 183

Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231
             ITG  ++ +V   R Q  AI+VG+ TVLAD+P L  R+   ++  P+RI+ D   +  
Sbjct: 184 KWITGESARARVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQ--PVRIVCDSQLRTP 241

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGV 287
           LD ++++TA     +I T  DD      FR   + ++ C  R    DL+ LL  L    +
Sbjct: 242 LDCQLVQTAKEYRTVIATVCDDLQKVEQFRPLGVEVLVCKARNKRVDLQDLLQKLGEMQI 301

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR----- 342
            SLL+EGG+++  S + S +V+ +  Y +  ++G     +P+    +++    V+     
Sbjct: 302 DSLLLEGGSSLNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKS 361

Query: 343 RDYFGSDVCLEYI 355
            +  G D+ L+Y+
Sbjct: 362 TELIGEDILLDYV 374


>gi|197335179|ref|YP_002155463.1| riboflavin biosynthesis protein RibD [Vibrio fischeri MJ11]
 gi|197316669|gb|ACH66116.1| riboflavin biosynthesis protein RibD [Vibrio fischeri MJ11]
          Length = 363

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/332 (36%), Positives = 181/332 (54%), Gaps = 24/332 (7%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
            M  A+  ++  +  T+ NP+V C++VKDG ++G G     G PHAEV AL +AG+EA+G
Sbjct: 1   MMQKAILLAKQGIYTTAPNPNVGCVLVKDGKIVGEGAHLKAGEPHAEVHALRQAGKEAQG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           ATAYVTLEPCSHYGR+PPCA+ +I+ G+++V+  + DP+ +V+GRGL  L++ GI     
Sbjct: 61  ATAYVTLEPCSHYGRTPPCAEGLIKAGVKKVICAMVDPNPQVAGRGLAMLNEAGIETASG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++E++ +     +LTR    +  + LK+A S D    +    S  IT   ++  V   RA
Sbjct: 121 LLEADARALNPHFLTRMETGKPFVQLKMAASLDGKTALKNGVSQWITSKEARQDVQRYRA 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGL----QE-------HSPMRIILDPHFKLSLDSKII 237
           QS AIL    TV+ D+  L  R + L    QE         PMR ILD    L+ D K+ 
Sbjct: 181 QSGAILSTAKTVIDDNASLNVRWSDLPPSIQESYQQAAIRQPMRFILDRQHALTSDLKLF 240

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-----GVTSLLV 292
           + A    V I ++N  P++       + N I C   D +  L  +V +      V  + V
Sbjct: 241 Q-ASGEVVTISSQNTHPIVT------SENHIQCCVDDEQLNLKEVVNKISRDFNVNHIWV 293

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           E GA +A S I   LVD +I+Y +  ++G  G
Sbjct: 294 EAGATLAASMIKENLVDELIIYLAPKLMGADG 325


>gi|163733978|ref|ZP_02141419.1| riboflavin biosynthesis protein ribD [Roseobacter litoralis Och
           149]
 gi|161392514|gb|EDQ16842.1| riboflavin biosynthesis protein ribD [Roseobacter litoralis Och
           149]
          Length = 366

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/326 (38%), Positives = 182/326 (55%), Gaps = 7/326 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           +R+M+ AL   R  +G    NP+V C+IVK+  V+GRG T  GG PHAE QAL +AG +A
Sbjct: 5   SRYMALALSLGRRGLGRVWPNPAVGCVIVKEDRVVGRGWTQPGGRPHAETQALAQAGAQA 64

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           RGA  YVTLEPC+H+G++PPCA  +++ G+ RV     DPD RV G G + L Q GI V 
Sbjct: 65  RGADVYVTLEPCAHHGKTPPCAAALVKAGVARVFAATGDPDPRVHGAGFRALEQAGIHVQ 124

Query: 128 R-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++E++ +     +  R    R  +TLK+A S D  I      S  ITG  ++  VH L
Sbjct: 125 SGILEAQARRDNAGFFARVELDRPFMTLKLAGSFDGRIATGTGESKWITGRQARRVVHAL 184

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA+ DA++VG GT   DDP LT R  G     P R+++     + L   + +TA   PVI
Sbjct: 185 RARHDAVMVGAGTARKDDPALTVRDLG-TAWQPARVVISRRLDVPLMGVLARTATEVPVI 243

Query: 247 IVTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           +    D DP L   ++     ++ C  +    D   ++  L G G+T +  EGG+A+A S
Sbjct: 244 LCHGKDADPQLIRTWQDLGAVLLPCAAKGGQLDPADVMRQLAGHGLTRIFCEGGSALAAS 303

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS 327
              + LVD +I + + + IG  G+PS
Sbjct: 304 LFEADLVDELIGFTAGLAIGAEGLPS 329


>gi|157374412|ref|YP_001473012.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella
           sediminis HAW-EB3]
 gi|157316786|gb|ABV35884.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella
           sediminis HAW-EB3]
          Length = 374

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/333 (36%), Positives = 185/333 (55%), Gaps = 17/333 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D   MS A++ +R  +  T  NP V  ++ K G VIG G     G PHAEV AL  A + 
Sbjct: 6   DIEMMSRAIKLARKGLYTTRPNPCVGSVVTKAGQVIGEGFHIRAGGPHAEVYALAMASDN 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPCA+ +I+ G+ RVVV ++DP+ +VSGRG++ L+  GI V
Sbjct: 66  AKGATAYVTLEPCSHHGRTPPCAEALIKAGVARVVVAIEDPNPQVSGRGIKMLTDAGIQV 125

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  ++  E       ++ R       IT+K+A S D    +    S  ITG  ++  V  
Sbjct: 126 DVGLLNVEAGDINPGFMKRMQSGLPKITVKLASSLDGKTALNNGVSKWITGSEARRDVQR 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSLDSK 235
           LRA+  A++ GI TVL DDP L  R + L          + H P+R+ILD   +L+   K
Sbjct: 186 LRARHCALVTGIETVLIDDPSLNVRHSELGVLANELAPSEIHQPLRVILDSRARLTKGFK 245

Query: 236 IIKTALLAPVIIVTENDDPV---LALAFRKKNINIIYCDC-RDLKKLLTILVGRGVTSLL 291
           +   ++ +P+++V+  D P+    A      ++ +   DC R +  LL   +G+   S+L
Sbjct: 246 LF--SVNSPILLVSCTDYPLEEQTAWPEHVSHLKLPADDCGRVVLSLLFKHLGQSCNSVL 303

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           +E GA +A S I     D ++LY++  ++G  G
Sbjct: 304 IEAGATLAGSVIEQGHGDELVLYQAMKILGSAG 336


>gi|218668008|ref|YP_002424804.1| riboflavin biosynthesis protein RibD [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|218520221|gb|ACK80807.1| riboflavin biosynthesis protein RibD [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 366

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 125/321 (38%), Positives = 179/321 (55%), Gaps = 8/321 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FMS AL  +   +     NP V  ++VKDG VIGRG     G PHAEV AL+EAG  
Sbjct: 6   DLAFMSEALVLAEQGLYSAHPNPCVGAVLVKDGRVIGRGAHLQAGEPHAEVLALKEAGAA 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSHYGR+PPCA  +I  GI RVV+ + DP+  V+GRG++ L   G++ 
Sbjct: 66  ARGATAYVTLEPCSHYGRTPPCADALIAAGIARVVIAMRDPNPLVAGRGVERLRAAGVVA 125

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +   +E+  +     +L R    R  + LK A+S D  + +A   S  +TG  ++  V  
Sbjct: 126 EEGCLEAAAEALNPGFLRRMRHGRPWLRLKQAMSLDGRVALANGRSQWLTGEAARADVQQ 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            RA++ AILVGIGTVLAD+P L  RL       P+++I+D H +   D+ +  T     V
Sbjct: 186 ERARASAILVGIGTVLADNPRLAPRLEAPLRRYPVKVIMDSHLRTPPDAALFGTP--GAV 243

Query: 246 IIVTENDDPV-LALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
            I    D PV    A       +++C       D ++++ +L  R +  +LVE G  VA 
Sbjct: 244 WIFHGQDAPVAARAALCAAGAELLFCRGTVQGLDWQEVMGMLAERQINEVLVEAGPGVAA 303

Query: 301 SFINSRLVDSIILYRSQIVIG 321
           S   + L+D  +LY + +++G
Sbjct: 304 SLFAAGLIDEWLLYVAPLLLG 324


>gi|209517119|ref|ZP_03265966.1| riboflavin biosynthesis protein RibD [Burkholderia sp. H160]
 gi|209502512|gb|EEA02521.1| riboflavin biosynthesis protein RibD [Burkholderia sp. H160]
          Length = 383

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/357 (35%), Positives = 192/357 (53%), Gaps = 21/357 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  ++  +  T  NP V C++V++G VIG G T   G  HAE++AL++A
Sbjct: 3   SQTDFVHMERALALAKRGMYTTDPNPRVGCVLVRNGEVIGEGYTQPAGQDHAEIRALKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G + RGATAYVTLEPCSH+GR+PPCA  +IE  I RV+  ++DP+ +VSGRGL  L 
Sbjct: 63  RSRGHDLRGATAYVTLEPCSHFGRTPPCANALIEAQIGRVIAAMEDPNPQVSGRGLAMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI V   ++ +E +     +++R    R  + +K+A S D   G+    S  IT   +
Sbjct: 123 EAGIEVRCGLLANEARELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGESQWITSAAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H  RA++ AIL GIGTV  D+P +T R        P R+++D    + LD++I+  
Sbjct: 183 RADGHAWRARASAILTGIGTVREDNPRMTVRAVDTPRQ-PRRVLIDSQLDVPLDAQILAG 241

Query: 240 ALLAPVIIVTENDDPVL---ALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLV 292
              AP +I   + D  L   A A R++   I+         DL ++L++L  R V  L V
Sbjct: 242 ---APTLIFCGHLDARLEERASALRERGAEIVALPNAAGKVDLPRMLSVLGERNVNELHV 298

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEG-----GIPSP-LEEGYLEKNFMCVRR 343
           E G  +  S +    VD +++Y +  ++G        +PSP L E  ++ NF  + R
Sbjct: 299 EAGYKLNGSLLREGCVDELLVYLAPSLLGMDSMSMFNLPSPDLLEDRVKLNFHTIER 355


>gi|319639397|ref|ZP_07994147.1| riboflavin biosynthesis protein RibD [Neisseria mucosa C102]
 gi|317399292|gb|EFV79963.1| riboflavin biosynthesis protein RibD [Neisseria mucosa C102]
          Length = 367

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/327 (37%), Positives = 184/327 (56%), Gaps = 9/327 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D + M  AL  ++     TS NP V C+I     ++G+G     G PHAEV AL +A
Sbjct: 3   SALDTQMMQTALELAKLGRFSTSPNPRVGCVIAHGAQIVGQGFHVKAGEPHAEVHALRQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
              A+GATAYVTLEPCSHYGR+PPCA+ +I  G+ RVV  + DP+  V+G+GL  L   G
Sbjct: 63  QAAAKGATAYVTLEPCSHYGRTPPCAEALIHSGVARVVASMTDPNPLVAGKGLSMLEAAG 122

Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  ++E++ +     +L+R    R  I LK A S D    ++   S  ITG  ++  
Sbjct: 123 IRTESGLLEAQARELNRGFLSRIERGRPFIRLKCAASLDGKTALSDGRSFWITGEAARED 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V +LRA+S A+L GIGTVLAD+P+L  R    L++  P RI+LD   ++ LD  ++    
Sbjct: 183 VQILRAESCAVLTGIGTVLADNPKLNVRSFPTLRQ--PARIVLDSRLQIPLDCHLVTDTD 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINII----YCDCR-DLKKLLTILVGRGVTSLLVEGGA 296
              VI+   +D+  L    + ++I II    + + R +L  L+  L   G   +L E G+
Sbjct: 241 SPTVIVTLSSDEKRLQALGKFEHIRIIRPSEHINGRINLPSLMPQLAELGFGEVLAEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +  +F+   LVD I+LY++  ++G G
Sbjct: 301 TLVSAFLKDDLVDEIVLYQAPKLLGAG 327


>gi|304440657|ref|ZP_07400541.1| riboflavin biosynthesis protein RibD [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304370844|gb|EFM24466.1| riboflavin biosynthesis protein RibD [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 368

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 123/331 (37%), Positives = 177/331 (53%), Gaps = 11/331 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D  FMS A+  ++  +G T TNP V C+IV++  +IG G     G  HAEV A+ +A   
Sbjct: 6   DRYFMSRAIELAKNGIGATKTNPLVGCVIVRNEKIIGEGYHKVFGSCHAEVNAINDAKAK 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE   GAT YV LEPCSHYG++PPCA  IIE  I RVV+   DP  +VSGRG++ L   G
Sbjct: 66  GENLDGATLYVNLEPCSHYGKTPPCADRIIEERITRVVIGNCDPFEKVSGRGIERLKNAG 125

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V+  +++ E +     Y T     R  + LK  ++ D  I      S  IT   S+  
Sbjct: 126 IEVEVGVLKEECEKLNERYFTYIKNNRPFVVLKSGMTIDGKIATKTYESQWITSEESRKF 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H LR   D I+VGI TVL DDP L  R  G   HSP RII+D   ++   +K++   L 
Sbjct: 186 SHELRGMCDGIMVGINTVLKDDPTLNVRA-GRYPHSPARIIVDSKLRIFPSAKVLSKDLE 244

Query: 243 APVII-VTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
              II  TEN D     +  + +N+N++    +    DL+ L+  L    ++S+L+EGG 
Sbjct: 245 NIAIIATTENCDKEKFEILSKMENVNVVIVKEKDKMVDLRDLMEKLKTFNISSILLEGGG 304

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           ++  S +  +LVD    + +  +IG  G+ +
Sbjct: 305 SLNASMLREKLVDKFYFFIAPKIIGSDGVSA 335


>gi|225874950|ref|YP_002756409.1| riboflavin biosynthesis protein RibD [Acidobacterium capsulatum
           ATCC 51196]
 gi|225792610|gb|ACO32700.1| riboflavin biosynthesis protein RibD [Acidobacterium capsulatum
           ATCC 51196]
          Length = 380

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/336 (36%), Positives = 187/336 (55%), Gaps = 14/336 (4%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P  + D R+M  AL  +R    ++S NP+V C++V++G ++G G   Y    HAE+ AL+
Sbjct: 10  PQGNEDQRWMQRALALARLSKAVSSPNPAVGCVLVREGALVGEGYHDYSRKDHAEIVALK 69

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +AG++ARGATAYVTLEPC H GR+ PC + +I  G+RRVV    DP+ +VSG+GL+ L Q
Sbjct: 70  QAGDQARGATAYVTLEPCCHTGRTGPCTEALIAAGVRRVVAATVDPNPKVSGQGLERLRQ 129

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP------I 174
            GI     + ESE +    A+          +TLK  VS D  I     GSV       +
Sbjct: 130 AGIETTAGIGESEARALNDAFACSMRNGHPFVTLKAGVSLDGRIA-PRPGSVETGKPYFL 188

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP-MRIILDPHFKLSLD 233
           TG  +  QV ++R + DA+L GI TVL DDP+L+ R  GL    P +R++LD   +L LD
Sbjct: 189 TGPQALAQVQVMRHEHDALLTGINTVLTDDPQLSDR-TGLPRRRPLLRVVLDSALRLPLD 247

Query: 234 SKIIKTALLAPVIIVT----ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
           SK+++TA    ++  +         + ++  R + +         L ++L  L    + S
Sbjct: 248 SKLVRTAQQDVLVFCSFAPIARRQALESMGVRVEELPGKTRGRISLDEVLGRLHEMQILS 307

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           +++E G  V  S +   L+D ++LY + +++G GGI
Sbjct: 308 VMLEAGGMVNASALADGLIDKLVLYYAPVLLGTGGI 343


>gi|254449430|ref|ZP_05062867.1| riboflavin biosynthesis protein RibD [Octadecabacter antarcticus
           238]
 gi|198263836|gb|EDY88106.1| riboflavin biosynthesis protein RibD [Octadecabacter antarcticus
           238]
          Length = 359

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/326 (38%), Positives = 180/326 (55%), Gaps = 15/326 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK----DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           M  AL   R  +G    NP+V C+IV+     G VIGRG TA GG PHAE +AL+    +
Sbjct: 1   MGMALSLGRRGLGRVWPNPNVGCVIVRPCENGGRVIGRGWTADGGRPHAETRALDSI--D 58

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GATAYVTLEPC+H+ ++PPC   +I   + RVV+   DPD RV+G+G+  L   GI +
Sbjct: 59  AAGATAYVTLEPCAHHAKTPPCVDALIAANVSRVVIATGDPDPRVAGKGIAILRAAGIDV 118

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  + E E ++ +  +L R  E R  +TLK+A S D  I  A   S  ITG  ++ +VH 
Sbjct: 119 MIGVREDEARVDMAGFLLRITENRPLVTLKLASSFDGRIAAATGESKWITGPDARRKVHA 178

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +RA  DA+LVG GTV ADDP LT R  G     P+RI+      +   + ++ T   AP+
Sbjct: 179 MRAAHDAVLVGAGTVRADDPTLTVREMGAVRQ-PVRIVASGRLDMGA-ANLLATINYAPL 236

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            +    +  V A  +  +    + CD +    D   ++  L   G+T +  EGG ++A S
Sbjct: 237 WLCHGAN--VDAQKWVDQGAKSLPCDLQGREIDPVDMMHKLAAAGLTRVFCEGGGSLAAS 294

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS 327
            + + LVD I+ + + IV+G  G PS
Sbjct: 295 LLGAGLVDEIVGFTAGIVLGAEGTPS 320


>gi|46143613|ref|ZP_00134868.2| COG1985: Pyrimidine reductase, riboflavin biosynthesis
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307247384|ref|ZP_07529431.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307260857|ref|ZP_07542543.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306856081|gb|EFM88237.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306869424|gb|EFN01215.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 364

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/363 (33%), Positives = 197/363 (54%), Gaps = 20/363 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++  +G T+ NP V C+IVK+G ++  G     G  HAE  A+    E+
Sbjct: 3   DLDYMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLHCKED 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GATAYVTLEPC H+GR+PPC+  +IE GI++V +   DP+  V+GRG   L Q G+ +
Sbjct: 63  LSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGANQLRQAGVEV 122

Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           V+ +++ E      IF H   T    KR ++ +K A++ D  I      S  ITG  ++ 
Sbjct: 123 VEGLLKEECDALNPIFFHYIQT----KRPYVLMKYAMTADGKIATGSGESKWITGESARA 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +V   R Q  AI+VG+ TVLAD+P L  R+   ++  P+RI+ D   +  LD ++++TA 
Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQ--PVRIVCDSQLRTPLDCQLVQTAK 236

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
               +I T +DD      FR   ++++ C  R    DL+ LL  L    + SLL+EGG++
Sbjct: 237 EYRTVIATVSDDLQKIEQFRPLGVDVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352
           +  S + S +V+ +  Y +  ++G     +P+    +++    V+      +  G D+ L
Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356

Query: 353 EYI 355
           +Y+
Sbjct: 357 DYV 359


>gi|90406961|ref|ZP_01215152.1| Putative pyrimidine deaminase/pyrimidine reductase [Psychromonas
           sp. CNPT3]
 gi|90312003|gb|EAS40097.1| Putative pyrimidine deaminase/pyrimidine reductase [Psychromonas
           sp. CNPT3]
          Length = 381

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/337 (36%), Positives = 179/337 (53%), Gaps = 21/337 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D  +MS AL  ++     ++ NP+V C+IV D IV+G G     G  HAEV AL  A
Sbjct: 7   SEQDKEYMSRALELAKKGRFTSAPNPNVGCVIVLDDIVVGTGFHFKAGQGHAEVYALAMA 66

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G +A+ +T YVTLEPCSH+GR+PPCA  +I+ G++RV V + DP+ +V+G+G++ L   G
Sbjct: 67  GSKAQSSTCYVTLEPCSHFGRTPPCALALIKAGVKRVCVAMRDPNPQVAGQGIKLLQDAG 126

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++E + K     ++ R + KR+ +TLK+  S D    +    S  ITG  S+  
Sbjct: 127 IEVSVGLLEPQAKQLNLGFINRMLHKRARVTLKLGASLDGKTALKNGKSQWITGSQSRCD 186

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-------------HSPMRIILDPHFK 229
           V   RAQ  AIL    TVLADDP L  R   LQ+               P+RIILD   K
Sbjct: 187 VQHFRAQQSAILSSASTVLADDPSLNVRFEELQQSMYFKGEISAEQLRQPLRIILDSRNK 246

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVG 284
           L+   KI   +L   +I+V       L+       +  + C        DL+ LL +L  
Sbjct: 247 LTGQEKIF--SLPGDIILVALQLRHDLSDFKGVAQVQSVVCPADEAGNIDLRSLLKLLNR 304

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
             +  + +E GA +A +F  ++LVD  ILY++  ++G
Sbjct: 305 YELNDIWLEVGATLAGAFFKAQLVDQFILYQAPKLMG 341


>gi|254441291|ref|ZP_05054784.1| riboflavin biosynthesis protein RibD [Octadecabacter antarcticus
           307]
 gi|198251369|gb|EDY75684.1| riboflavin biosynthesis protein RibD [Octadecabacter antarcticus
           307]
          Length = 370

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 123/326 (37%), Positives = 179/326 (54%), Gaps = 15/326 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK----DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           M  AL   R  +G    NP+V C+IV+     G VIGRG TA GG PHAE +AL+  G +
Sbjct: 1   MGMALSLGRRGLGRVWPNPNVGCVIVRPNENGGRVIGRGWTADGGRPHAETRALD--GID 58

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GAT+YVTLEPC+H+G++PPC   +I   + RVV+   DPD RV+G+G+  L   GI +
Sbjct: 59  ADGATSYVTLEPCAHHGKTPPCVDALIGANVGRVVIATGDPDPRVAGKGVAMLRAAGIDV 118

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  + E E +  +  +L R  E R  +TLK+A S D  I  A   S  ITG  ++ +VH 
Sbjct: 119 ITGVREHEAREDMAGFLLRVTENRPFVTLKLASSFDGRIATATGQSKWITGPDARRKVHA 178

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +RA  DA+LVG GTV ADDP LT R  G     P+R++      +   + ++ T   AP+
Sbjct: 179 MRAGHDAVLVGAGTVRADDPTLTVRNTGAVRQ-PVRVVASRRLDIGA-ANLLATLGDAPL 236

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            +    +  V A  +       + CD +    D   ++  L   G+T +  EGG ++A S
Sbjct: 237 WLCHGAN--VDAQKWADLGAKTLACDLQGRQIDPVDMMHKLAASGLTRVFCEGGGSLAAS 294

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS 327
            + + LVD I+ + + I +G  G PS
Sbjct: 295 LLGAGLVDEIVGFTAGIALGAEGTPS 320


>gi|16079385|ref|NP_390209.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310245|ref|ZP_03592092.1| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221314569|ref|ZP_03596374.1| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221319491|ref|ZP_03600785.1| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221323767|ref|ZP_03605061.1| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|132565|sp|P17618|RIBD_BACSU RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
           RecName:
           Full=Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase; Includes: RecName:
           Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|40085|emb|CAA35878.1| unnamed protein product [Bacillus subtilis]
 gi|410125|gb|AAA67481.1| ribG [Bacillus subtilis subsp. subtilis str. 168]
 gi|2634763|emb|CAB14260.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|34873545|gb|AAQ83285.1| RibG [Cloning vector pRFN4]
          Length = 361

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/325 (36%), Positives = 168/325 (51%), Gaps = 12/325 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL  ++   G T +NP V  ++VKDG ++G G     G  HAEV A+  AG  A G
Sbjct: 5   YMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAEG 64

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI----- 124
           A  YVTLEPCSHYG++PPCA+ II  GI+RV V + DP+  V+GRG+  + + GI     
Sbjct: 65  ADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVREG 124

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           I+    E   + FLH   T       ++TLK A S D  I  +   S  IT   ++    
Sbjct: 125 ILADQAERLNEKFLHFMRT----GLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQ 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             R    +ILVG+GTV AD+P LTCRL  + +  P+R+ILD    +  D+K+I   +   
Sbjct: 181 QYRKTHQSILVGVGTVKADNPSLTCRLPNVTKQ-PVRVILDTVLSIPEDAKVICDQIAPT 239

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHSF 302
            I  T   D           +NI   +   ++   +L IL   G+ S+ VEGG+AV  SF
Sbjct: 240 WIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVHGSF 299

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327
           +       II Y +  +IG    PS
Sbjct: 300 VKEGCFQEIIFYFAPKLIGGTHAPS 324


>gi|254303903|ref|ZP_04971261.1| diaminohydroxyphosphoribosylaminopyrimidine/5-amino-6-(5-
           phosphoribosylamino)uracil reductase [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148324095|gb|EDK89345.1| diaminohydroxyphosphoribosylaminopyrimidine/5-amino-6-(5-
           phosphoribosylamino)uracil reductase [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 369

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/365 (32%), Positives = 198/365 (54%), Gaps = 14/365 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M+ A+  ++  +G  + NP V  ++VKDG +IG G     G PHAEV AL EAGE 
Sbjct: 6   DEKYMARAIELAQKGIGGVNPNPLVGAVVVKDGKIIGEGWHKKFGGPHAEVWALNEAGEN 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GAT YVTLEPCSH G++PPCA+ I+E GI+R VV   DP+  V+G+G++ + + GI +
Sbjct: 66  AEGATIYVTLEPCSHQGKTPPCARRIVEAGIKRCVVACIDPNPLVAGKGMKIIEEAGIDI 125

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E K     +L     K  ++ LK  ++ D  I      S  IT  I++ +V  
Sbjct: 126 KLGVLEKEAKDVNKIFLKYIENKVPYLFLKCGITLDGKIATRSGKSKWITNEIAREKVQF 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           LR +  AI+VGI TVL D+P L  RL+    G+++ +P R+++DP+ +  +++K +    
Sbjct: 186 LRTKFMAIMVGINTVLKDNPSLDSRLDEEKFGIEKRNPFRVVIDPNLESPIEAKFLNFN- 244

Query: 242 LAPVIIVTENDDPVLA--LAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAA 297
               IIVT +D+  L     + K     I+ + +  K   +L  L    + S+L+EGG+ 
Sbjct: 245 DNKAIIVTSSDNKNLEKIKVYEKLGTKFIFLEGKTFKMEDILKELGKLEIDSVLLEGGSE 304

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           +  +     ++D+  ++ +  +IG+     P   G+   NF  +   +  S+      G 
Sbjct: 305 LISTAFKENIIDAGEIFIAPKIIGDNS-AVPFINGF---NFDSMEDVFKFSNPKFNIYGD 360

Query: 358 NLCLQ 362
           N+ ++
Sbjct: 361 NISIE 365


>gi|303228926|ref|ZP_07315736.1| riboflavin biosynthesis protein RibD [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516340|gb|EFL58272.1| riboflavin biosynthesis protein RibD [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 406

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 128/352 (36%), Positives = 184/352 (52%), Gaps = 38/352 (10%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++   G TS NP V  ++VK+  ++G G     G  HAEV AL+ AG+ 
Sbjct: 4   DELYMKRAISLAKMATGHTSPNPLVGAVVVKNNTIVGEGYHHKAGEAHAEVHALDAAGDN 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGAT YVTLEPC+HYG++PPCA+ ++E GI RVV+   DP+  V+G+G+Q L++ GI V
Sbjct: 64  ARGATLYVTLEPCAHYGKTPPCAKRVVESGIARVVIGSTDPNPLVAGKGIQILTEAGIEV 123

Query: 127 --DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
             D  ++   ++  H +   Q  K   +T+K A+S D  I      S  IT   S+   H
Sbjct: 124 TTDVCVDECIQLNEHFFTFIQTHK-PFVTIKSAMSLDGKIATFTGQSQWITNESSRKDGH 182

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL------------------NGLQEHSPMRIILDP 226
           +LRA  DA+LVGIGT+LADDP L CRL                  N L+ H P  IILD 
Sbjct: 183 ILRASHDAMLVGIGTILADDPLLNCRLTRDELYEALINRHDVSIDNTLEVHQPDIIILDS 242

Query: 227 HFKLSLDSKIIKTALLAPVIIVTEN--DDPVLALA-------------FRKKNINIIYCD 271
             +   D+K+        +I V +   +   +ALA              R+     +  D
Sbjct: 243 QGRTPTDAKVFTIPNRKVIIYVAKGCPEQRRIALANVGAIVEELPTKSVRQGRTTDVAID 302

Query: 272 CR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            +  D++  L  L  +  TS+LVEGG+ +  SF+ S   D I+ Y   +VIG
Sbjct: 303 IKKIDIQACLEHLGEQEYTSVLVEGGSTIISSFVESLAFDKIVTYIGNLVIG 354


>gi|219849511|ref|YP_002463944.1| riboflavin biosynthesis protein RibD [Chloroflexus aggregans DSM
           9485]
 gi|219543770|gb|ACL25508.1| riboflavin biosynthesis protein RibD [Chloroflexus aggregans DSM
           9485]
          Length = 409

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 122/330 (36%), Positives = 174/330 (52%), Gaps = 10/330 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL  ++   G TS NP V  +IVKDG ++G G     G PHAEV+AL  AGE ARG
Sbjct: 10  YMRRALVLAQQAAGRTSPNPMVGAVIVKDGRIVGEGYHRRAGEPHAEVEALRVAGEAARG 69

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           AT YVTLEPC+H GR+PPC   II  GI  V   + DP+  VSG+G   L+  GI V   
Sbjct: 70  ATMYVTLEPCAHVGRTPPCTDAIIAAGITEVYYAIADPNPLVSGKGHAQLAAAGIRVQCG 129

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + E+E       +       R  +T K A+S D  I      S  I+   ++ +VH LR 
Sbjct: 130 VCEAEAFELNRPFFKHITTGRPFVTAKFAMSLDGKIATVIGQSRWISNAAARRRVHHLRN 189

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHS---PMRIILDPHFKLSLDSKIIKTALLAPV 245
           ++DA+LVG GTV+ADDP LT RL  L   S   P+RI+ D   ++ L +K+    L    
Sbjct: 190 RTDAVLVGAGTVIADDPSLTTRLPDLSPDSIRHPLRIVADSRGRVPLSAKVFDPDLPGQT 249

Query: 246 IIVTENDDPV-LALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVA 299
           ++ T    P     A  ++ +++      D     L  L   L  RG+ S+LVEGG+ + 
Sbjct: 250 VVATTELIPADHRRALVERGVDVWLLPASDDGRVRLSALFDELGRRGMLSVLVEGGSELL 309

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
            +    RL+D + ++ + ++IG    P P+
Sbjct: 310 GACFCERLIDRVWVFMAPLIIGGQHAPGPV 339


>gi|78043574|ref|YP_360307.1| riboflavin biosynthesis protein RibD [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995689|gb|ABB14588.1| riboflavin biosynthesis protein RibD [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 361

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 133/367 (36%), Positives = 196/367 (53%), Gaps = 34/367 (9%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D + M  AL+ ++  +G TS NP V  +IV KDG ++G G     G PHAE +AL+ AGE
Sbjct: 3   DQQLMKRALKLAKRALGRTSPNPVVGAVIVDKDGNIVGEGYHKKAGLPHAEREALKVAGE 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +ARG T YVTLEPC HYGR+PPC   II  GI++VVV V DP+ +VSG+G++ L   GI 
Sbjct: 63  KARGGTMYVTLEPCCHYGRTPPCTDAIIAAGIKKVVVAVRDPNPKVSGKGIEILRNAGIE 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   + +E   +L+    + ++     I+LK A++ D  I      S  ++G  S++ VH
Sbjct: 123 VVEGVLAEEAFYLNEKFFKFIKTGLPFISLKWAMTVDGKIATETYDSRWVSGEKSRSFVH 182

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILD-----PH----FKLSLDSK 235
            LR + DA+LVG  T++ D+P LTCR+   Q  +P RI+L      P     F+L  +  
Sbjct: 183 RLRNEYDAVLVGAKTLIIDNPLLTCRIP--QGRNPYRIVLSGSGNLPEGLNIFQLEKEKN 240

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
           I+ TA       V+     ++     +  INI        K+    L   G+ S+LVEGG
Sbjct: 241 ILITASKKLPKHVSNGFGHIITTPLGENRINI--------KEAFLELSRLGIISILVEGG 292

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM---------CVRRDYF 346
           A V  S + +RL D   ++ +  ++G    P P+  G L+ + M          +RR  F
Sbjct: 293 AVVHASLLQNRLADKAYIFIAPKIVGGKNAPGPI--GDLKISLMKDALPLAIHKLRR--F 348

Query: 347 GSDVCLE 353
           G DV +E
Sbjct: 349 GEDVFIE 355


>gi|258627340|ref|ZP_05722124.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
           mimicus VM603]
 gi|258580378|gb|EEW05343.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
           mimicus VM603]
          Length = 367

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 121/338 (35%), Positives = 182/338 (53%), Gaps = 25/338 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +AGE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+GRG+Q L
Sbjct: 61  MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGRGVQML 120

Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI V+  ++E++ +     +L R      ++ LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227
           ++  V   RAQ+  IL    TVLAD+  L  R + L +             P R+ILD  
Sbjct: 181 ARKDVQRFRAQASTILSTSQTVLADNASLAVRWHDLPQSVQAQYAETDLRQPFRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-G 286
            +L  +  + +T+  + + + +EN D    L    +N  +      DL +LL  L  +  
Sbjct: 241 HQLHPELALYQTS-SSVLRVASENAD----LCISAENGKL------DLHELLAQLAQQHN 289

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           V  + VE G  +A S I  +LVD IILY +  ++G  G
Sbjct: 290 VNQVWVEAGGQLAQSLIEQKLVDEIILYLAPKLMGSDG 327


>gi|15893879|ref|NP_347228.1| riboflavin biosynthesis protein RIBD (pirimidine deaminase and
           pirimidine reductase) [Clostridium acetobutylicum ATCC
           824]
 gi|15023459|gb|AAK78568.1|AE007574_6 Riboflavin biosynthesis protein RIBD (pirimidine deaminase and
           pirimidine reductase) [Clostridium acetobutylicum ATCC
           824]
          Length = 383

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 113/325 (34%), Positives = 179/325 (55%), Gaps = 6/325 (1%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           V   +  FM  AL  +    G  + NP V  +IVKD  ++G G     G  HAEV AL  
Sbjct: 16  VFKLNEAFMKRALEIAEKGSGYVNPNPMVGAVIVKDNKIVGEGYHEKFGGNHAEVNALNM 75

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG++A G+  YVTLEPCSHYG++PPCA  +++ GI+RV++ ++DP+  VS +G++ L + 
Sbjct: 76  AGKDAEGSELYVTLEPCSHYGKTPPCALAVVKAGIKRVIIAMEDPNPLVSTKGIKILKEN 135

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI ++  +M+ E +     ++     KR  IT+K+A + D  I      S  I+G  S+ 
Sbjct: 136 GIEVITGVMKKESEKLNEVFIKYITTKRPFITMKMASTLDGKICTVSGESRWISGQTSRK 195

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH LR++  +I+VG+GT + D+P LT R+ G    SP+ II+D   ++  D +I  T  
Sbjct: 196 YVHHLRSKYMSIMVGVGTAINDNPLLTTRIEGENVRSPIAIIVDSKLRVPKDLRIFNTLQ 255

Query: 242 LAPVII-VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
              +II  TE  D           ++II    +    +L  LL  L   G+ S+L+EGG+
Sbjct: 256 ERKIIIATTEYADKNKENELINMGVSIIKTPNKNGRVNLDYLLDELGKIGIDSVLLEGGS 315

Query: 297 AVAHSFINSRLVDSIILYRSQIVIG 321
            +  SFI    +D I+ + + +++G
Sbjct: 316 ELNFSFIKEENIDKIMCFIAPMIVG 340


>gi|153216165|ref|ZP_01950304.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 1587]
 gi|124114423|gb|EAY33243.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 1587]
          Length = 367

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 120/339 (35%), Positives = 180/339 (53%), Gaps = 27/339 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +A E  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+G+G+Q L
Sbjct: 61  MRQASELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120

Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI V+  ++E++ +     +L R       + LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R + L +             P+R+ILD  
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPQSVQAQYAEADLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGR- 285
            +L             P + + +   PVL +A     + I   + + DL++LL  L  + 
Sbjct: 241 HQLH------------PELALYQTPSPVLRVASENAELCISAENEKLDLRELLAQLAQQH 288

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            V  + VE G  +A S I  +LVD IILY +  ++G  G
Sbjct: 289 NVNQVWVEAGGQLAKSLIEQKLVDEIILYLAPKLMGSDG 327


>gi|330006909|ref|ZP_08305781.1| riboflavin biosynthesis protein RibD [Klebsiella sp. MS 92-3]
 gi|328535663|gb|EGF62112.1| riboflavin biosynthesis protein RibD [Klebsiella sp. MS 92-3]
          Length = 367

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 132/366 (36%), Positives = 190/366 (51%), Gaps = 26/366 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ +      T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEMYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  ARGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIEV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R       + LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMNEAEALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R   L   +           P+R+++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPEH 242

Query: 235 KIIKTA--LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLL 291
           +I++ A   L   +   E   P  A     + + +   +      LL +L+G+  + S+ 
Sbjct: 243 RIVQQAGETLFARLRADERQWPESA-----RTLLVPEHNGHLDLVLLMMLLGKQQINSVW 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-----GIPSPLEEGYLEKNFMCVRRDYF 346
           VE GA +A + + + LVD +I+Y +  ++G        +P  LEE     +F        
Sbjct: 298 VEAGATLAGALLQAGLVDELIVYIAPKLLGNAARGLCALPG-LEELNQAPHFKFNEIRQV 356

Query: 347 GSDVCL 352
           G DVCL
Sbjct: 357 GPDVCL 362


>gi|238893351|ref|YP_002918085.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Klebsiella pneumoniae NTUH-K2044]
 gi|262042437|ref|ZP_06015597.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|238545667|dbj|BAH62018.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|259040212|gb|EEW41323.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 367

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 132/366 (36%), Positives = 190/366 (51%), Gaps = 26/366 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ +      T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEMYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  ARGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIEV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R       + LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMNEAEALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R   L   +           P+R+++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPEH 242

Query: 235 KIIKTA--LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLL 291
           +I++ A   L   +   E   P  A     + + +   +      LL +L+G+  + S+ 
Sbjct: 243 RIVQQAGETLFARLRADERQWPESA-----RTLLVPEHNGHLDLVLLMMLLGKQQINSVW 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-----GIPSPLEEGYLEKNFMCVRRDYF 346
           VE GA +A + + + LVD +I+Y +  ++G        +P  LEE     +F        
Sbjct: 298 VEAGATLAGALLQAGLVDELIVYIAPKLLGNAARGLCALPG-LEELSQAPHFKFNEIRQV 356

Query: 347 GSDVCL 352
           G DVCL
Sbjct: 357 GPDVCL 362


>gi|49088842|gb|AAT51612.1| PA4056 [synthetic construct]
          Length = 374

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 176/342 (51%), Gaps = 33/342 (9%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL  +R  +  T  NP V C++VKDG V+G G     G PHAEV AL +AGE 
Sbjct: 5   DPLYMARALELARQGLYSTQPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQAGEN 64

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q GI V
Sbjct: 65  ARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQAGIAV 124

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E +     ++ R       + +K+A+S D    MA   S  ITG  +++ V  
Sbjct: 125 QSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARSAVQR 184

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSLDSK 235
           L A+S  +L G  T+LADD  L  R + L              P+R+++D   ++ L+S 
Sbjct: 185 LSARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRVPLESA 244

Query: 236 IIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
             +     P ++ T           +    +LAL   + ++        DL KLL  L  
Sbjct: 245 FYQA---GPALVATCAAASARERFQDAGHELLALPSAEGHV--------DLHKLLLELAA 293

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           RG   +LVE G  +A +F    LVD   L+ +   +G    P
Sbjct: 294 RGANEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARP 335


>gi|321311800|ref|YP_004204087.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Bacillus subtilis BSn5]
 gi|320018074|gb|ADV93060.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Bacillus subtilis BSn5]
          Length = 361

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 120/325 (36%), Positives = 168/325 (51%), Gaps = 12/325 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL  ++   G T +NP V  ++VKDG ++G G     G  HAEV A+  AG  A G
Sbjct: 5   YMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAEG 64

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI----- 124
           A  YVTLEPCSHYG++PPCA+ II  GI+RV V + DP+  V+GRG+  + + GI     
Sbjct: 65  ADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMIKEAGIEVREG 124

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           I+    E   + FLH   T       ++TLK A S D  I  +   S  IT   ++    
Sbjct: 125 ILADQAERLNEKFLHFMRT----GLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQ 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             R    +ILVG+GTV AD+P LTCRL  + +  P+R+ILD    +  D+K+I   +   
Sbjct: 181 QYRKTHQSILVGVGTVKADNPSLTCRLPNVTKQ-PVRVILDTVLSIPEDAKVICDQIAPT 239

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHSF 302
            I  T   D           +NI   +   ++   +L IL   G+ S+ VEGG+AV  SF
Sbjct: 240 WIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVHGSF 299

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327
           +       II Y +  +IG    PS
Sbjct: 300 VKEGCFQEIIFYFAPKLIGGTHAPS 324


>gi|163789730|ref|ZP_02184167.1| Riboflavin biosynthesis protein RIBD (pirimidine deaminase and
           pirimidine reductase) [Carnobacterium sp. AT7]
 gi|159874952|gb|EDP69019.1| Riboflavin biosynthesis protein RIBD (pirimidine deaminase and
           pirimidine reductase) [Carnobacterium sp. AT7]
          Length = 351

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 114/311 (36%), Positives = 176/311 (56%), Gaps = 8/311 (2%)

Query: 17  FSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTL 76
            +R   G T+ NP V  +IVK G VIG+G     G PHAEV A+  A E+  GAT YVTL
Sbjct: 1   MARKGKGWTTPNPLVGAIIVKGGRVIGQGYHQKYGQPHAEVNAIASAKEDVTGATLYVTL 60

Query: 77  EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGK 135
           EPCSH+G++PPC+  +I+  I+RVVV   DP+  V+G+G++ L   GI +V  ++E E +
Sbjct: 61  EPCSHFGKTPPCSDLLIDKNIKRVVVGTLDPNPLVAGKGIERLRSNGIEVVTGVLEEESQ 120

Query: 136 IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195
                ++   V K   + +K A+S D  I      S  I+G  S+ QVH LR +   I+V
Sbjct: 121 KLNEIFIKYIVTKEPFVVMKNAMSLDGKIATVTGESQWISGESSRKQVHSLRHELAGIMV 180

Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
           GI T++ DDP+LT R   L   +P+RI++D   ++ + SK++     A  I+ T      
Sbjct: 181 GIETIIKDDPQLTSRT--LNSRNPIRIVVDSQLRIPIASKVLTQQDKAKTIVATTRRANK 238

Query: 256 LAL-AFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
             L   ++ +I ++    +    DLK+L+ +L  +G+ S+L+EGGA +  S +   +VD 
Sbjct: 239 EKLDTLKQMDIEVLVTKEKGGRVDLKELMKLLGAKGIDSILLEGGANLNFSALEEGIVDK 298

Query: 311 IILYRSQIVIG 321
           I  Y +  +IG
Sbjct: 299 IQSYIAPKIIG 309


>gi|125624336|ref|YP_001032819.1| riboflavin biosynthesis protein RibD [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|44662840|gb|AAS47500.1| riboflavin-specific deaminase/reductase [Lactococcus lactis subsp.
           cremoris NZ9000]
 gi|124493144|emb|CAL98108.1| riboflavin biosynthesis protein RibD [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071120|gb|ADJ60520.1| riboflavin biosynthesis protein RibD [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 362

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 127/362 (35%), Positives = 196/362 (54%), Gaps = 22/362 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM+ A+  +R   G  + NP V  +IV DG +IG+G     G  HAE+ A +   E 
Sbjct: 4   DEHFMNLAILLARKGGGNVNPNPQVGAIIVNDGRIIGQGYHEKYGEAHAEINAFKSCIES 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             G+T YVTLEPC+H G+ PPC + II+  ++RVV+   DP+  V+G+G++ + + GI V
Sbjct: 64  PEGSTIYVTLEPCAHQGKQPPCFEAIIKNKVKRVVIGSLDPNPLVAGKGIEAMKKAGIDV 123

Query: 127 D-RMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
             +++E E     KIF H Y+T   ++  ++ +K A++ D  I      S  ITG  ++ 
Sbjct: 124 SLKVLEKECKDLNKIFFH-YVT---QRTPYVMMKYAMTLDGKIATYKGQSKWITGEKARQ 179

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
           +VH  R++  AI++G+ T+L DDP+LT R+ NG+   +P+RII D   +  L SKI+ TA
Sbjct: 180 KVHEDRSRFMAIMIGVETLLKDDPQLTARIKNGI---NPIRIICDTQLRTPLTSKIVSTA 236

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGA 296
              P II T N++     AF +    I+         DLK L+T L  R + SL++EGGA
Sbjct: 237 FEIPTIIATSNENIQKHQAFIEAGCEILLVSSISKHLDLKDLITKLGEREIDSLILEGGA 296

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVC 351
            +  S + + +V  +  Y +  + G    PS +E   +E        D     Y G D+ 
Sbjct: 297 RLNASALKAGIVQKVQAYIAPKIFGGKEAPSSVEGLGVEHPDQAYLLDRPQVAYLGEDIL 356

Query: 352 LE 353
           LE
Sbjct: 357 LE 358


>gi|237749273|ref|ZP_04579753.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Oxalobacter
           formigenes OXCC13]
 gi|229380635|gb|EEO30726.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Oxalobacter
           formigenes OXCC13]
          Length = 363

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 111/323 (34%), Positives = 175/323 (54%), Gaps = 11/323 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GE 65
           +FM  AL  +R    LTS NP V C+IV+DG +IG G T   G  HAEV+AL +    G+
Sbjct: 6   KFMRRALELARKCSVLTSPNPRVGCVIVRDGEIIGEGFTQPVGGNHAEVEALNDVAKRGQ 65

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           + RGAT YVTLEPCSH GR+PPCA  +I   ++RVV  ++DP+V+V+G+GL  L   GI 
Sbjct: 66  DCRGATVYVTLEPCSHRGRTPPCADALIRANVKRVVAAIEDPNVQVAGKGLAKLKAAGIE 125

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           ++  ++  E +     +L+R    R  + +K+A S D    +    S  IT   ++   H
Sbjct: 126 VLCGVLPDEARELNRGFLSRFEHGRPWVRMKVAASLDGKTALTNGESQWITSEAARRDGH 185

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             R ++DAI+ GIGTV+ D+P L  RL       P RI++D   K  +D+++++      
Sbjct: 186 EWRMRADAIMTGIGTVIKDNPRLNVRLPDTIRQ-PKRIVVDSQLKTPIDARVLENG--GD 242

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300
             I + N  P    A ++K + +          DL  ++ +L  + +  + VE GA +  
Sbjct: 243 TWIFSANASPYKIEAMQEKGVQVFSAINDTGRVDLADMMKVLAEKEINEVHVEAGATLNG 302

Query: 301 SFINSRLVDSIILYRSQIVIGEG 323
           + I +  VD +++Y +   +G G
Sbjct: 303 ALIQAGFVDEMLIYLAPCFLGSG 325


>gi|224476858|ref|YP_002634464.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421465|emb|CAL28279.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 349

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 123/320 (38%), Positives = 169/320 (52%), Gaps = 15/320 (4%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           RF+  A++ ++   G T  NP+V  ++V  G ++G G     G  HAEVQAL+ AG++AR
Sbjct: 3   RFLENAIQLAKMAEGQTGVNPAVGSVVVNHGRIVGLGAHLKQGERHAEVQALDMAGDQAR 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           G T YV+LEPC+HYG +PPC   IIE GI +VV  +   D+ +   G + L   GI V  
Sbjct: 63  GGTIYVSLEPCTHYGSTPPCVNKIIEAGISKVVYAMK--DITLDSPGDEILKSAGIEVVY 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
             E E +     +   +V K   +TLK++VS D         S  IT    K  V   RA
Sbjct: 121 QHEVEAEKMYKDFFAAKVSKIPEVTLKVSVSLDGKQATDSGQSQWITNPGVKQDVLKNRA 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DAIL G GTV AD+P LT R+ G  E  P+R+ILD    LS    I     L PV + 
Sbjct: 181 RHDAILTGAGTVEADNPSLTVRIEG--ERQPIRVILDKSGSLSFQENIFHDQ-LTPVWLY 237

Query: 249 TENDDPVLALAFRKK----NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           TEN+      A + K    NINII  +   +  +L  L  +G+ SL VE G  V+  F+ 
Sbjct: 238 TENN------AVQNKEHLDNINIIQLEECSVHNILRDLYNKGIGSLYVEAGPNVSSQFLQ 291

Query: 305 SRLVDSIILYRSQIVIGEGG 324
           S  V ++I+Y +  VIG  G
Sbjct: 292 SECVQTLIIYYAPKVIGGSG 311


>gi|169342987|ref|ZP_02864015.1| riboflavin biosynthesis protein RibD [Clostridium perfringens C
           str. JGS1495]
 gi|169298896|gb|EDS80970.1| riboflavin biosynthesis protein RibD [Clostridium perfringens C
           str. JGS1495]
          Length = 365

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 120/336 (35%), Positives = 183/336 (54%), Gaps = 16/336 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  AL  +R   G  + NP V  +IVKDG +IG+G   + G  HAE+ A+  + + 
Sbjct: 2   DEFFMKKALELARKGEGYVNPNPLVGAVIVKDGEIIGQGYHEFFGGNHAEINAINSSIKS 61

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GAT YVTLEPC HYG++PPC + II+   +RVVV   DP+  VSG+ ++ L + GI V
Sbjct: 62  TEGATIYVTLEPCCHYGKTPPCVEAIIKNKFKRVVVGTLDPNPLVSGKSIKILRESGIEV 121

Query: 127 D-RMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
              ++E E     +IF + Y+    E R  I LK A++ D  I      S  IT   S+ 
Sbjct: 122 KVGVLEKECIRLNEIF-NFYIK---ENRPFIALKWAMTLDGKIATKDFKSKWITNKKSRE 177

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKT 239
            VH LR +  +I+VGI TVL D+P+L CRLN  +  E    RI+LD   ++ LDS+I+K 
Sbjct: 178 FVHSLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKN 237

Query: 240 ALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294
              +  +I T N  D +     + K I +I  +      ++ ++L  L  + + S+L+EG
Sbjct: 238 QSESKTLIFTTNKKDKIKNEKLKDKGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEG 297

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           G  +  +F+ ++ V+ I  + +  V G     +P+E
Sbjct: 298 GGNLNFTFLENKKVNKIYAFVAPKVFGGKNAITPVE 333


>gi|237743881|ref|ZP_04574362.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium sp. 7_1]
 gi|229432912|gb|EEO43124.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium sp. 7_1]
          Length = 370

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/363 (33%), Positives = 198/363 (54%), Gaps = 17/363 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M+ A+  ++   G  + NP V  ++VKDG +IG G     G PHAEV AL EAGE 
Sbjct: 6   DEKYMARAIELAKRGTGSVNPNPLVGAVVVKDGKIIGEGWHKKYGGPHAEVWALNEAGEN 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YVTLE CSH G++PPCA+ I+E GI+R VV   DP+  V+G+G++ +   GI V
Sbjct: 66  AKGATIYVTLESCSHQGKTPPCAKRIVEAGIKRCVVACIDPNPLVAGKGMKIIEDAGIEV 125

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E K     +L     K  ++ LK  ++ D  I      S  IT  I++ +V  
Sbjct: 126 KFGVLEKEAKDVNKIFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKVQF 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           LR +  AI+VGI TVL D+P L  RL+    G+++ +P RI++DP+ +  +++K +    
Sbjct: 186 LRTKFMAIMVGINTVLKDNPSLDSRLDEKKFGIEKRNPFRIVVDPNLESPIEAKFLNFN- 244

Query: 242 LAPVIIVTENDDPVLALAFRKKNIN--IIYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297
               IIVT ND+  L      KN+    I+ + +   +K +L  L    + S+L+EGG+ 
Sbjct: 245 DGKAIIVTSNDNRELEKIKEYKNLGTRFIFLEGKIFKMKDILKELGKLEIDSVLLEGGSG 304

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV------RRDYFGSDVC 351
           +  +     ++++  ++ +  +IG+     P   G+   N   V      + + +G ++ 
Sbjct: 305 LISTAFKENIINAGEIFIAPKIIGDNS-AIPFINGFNFDNMEDVFKLPNPKFNIYGDNIS 363

Query: 352 LEY 354
           +E+
Sbjct: 364 IEF 366


>gi|332307440|ref|YP_004435291.1| riboflavin biosynthesis protein RibD [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174769|gb|AEE24023.1| riboflavin biosynthesis protein RibD [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 372

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 116/333 (34%), Positives = 185/333 (55%), Gaps = 14/333 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62
           S+ DA+ M+ A+R +      TS NP+V C++    G ++G+G     G PHAE+ A+ +
Sbjct: 5   SALDAKMMALAIRLAEKGQYTTSPNPNVGCVLTDPKGNIVGQGWHQKAGTPHAEIHAIAQ 64

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE  +GATAYVTLEPC+H+GR+ PC++ +I+ G+ RVV  + DP+  V+G GLQ LS  
Sbjct: 65  AGERTKGATAYVTLEPCNHHGRTGPCSEALIKAGVSRVVAAMVDPNPLVAGSGLQKLSDA 124

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ V   ++E E K     ++ R       +T+K+A S D    +    S  ITG +++ 
Sbjct: 125 GVAVSSGLLEREAKALNLGFIKRMKTGMPWVTVKLASSLDGKTALNNGESQWITGPLARE 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-------NGLQEHS---PMRIILDPHFKLS 231
            V   RA+S AIL G GTVLAD+P L  R        + L E S   P RI+LD   ++ 
Sbjct: 185 DVQRHRAKSCAILSGSGTVLADNPSLNVRYSELGFAKSELTEESLRQPGRILLDGRNQMR 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
            D  +   +L +P++I+    +     A  ++   +      DL  ++  L  RG   + 
Sbjct: 245 PDLHLF--SLSSPIVIINSQPNTADFPAHVEQYQALSNGAQLDLHDVMKHLGQRGFNQIW 302

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           VE GA +A + + ++L+D +ILY++  ++G+ G
Sbjct: 303 VEAGAKLAGALLQNKLIDELILYQAPKLLGDKG 335


>gi|294793755|ref|ZP_06758892.1| riboflavin biosynthesis protein RibD [Veillonella sp. 3_1_44]
 gi|294455325|gb|EFG23697.1| riboflavin biosynthesis protein RibD [Veillonella sp. 3_1_44]
          Length = 403

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 127/349 (36%), Positives = 180/349 (51%), Gaps = 34/349 (9%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++   G TS NP V  ++VKD  +IG G     G  HAEV AL +AG+ 
Sbjct: 3   DVVYMKRAIELAKLATGHTSPNPLVGAVVVKDNTIIGEGYHHKAGTAHAEVHALNQAGDN 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSHYG++PPCA  IIE GI +V+V   DP+  VSG+G++ L + GI +
Sbjct: 63  AKGATLYVTLEPCSHYGKTPPCALRIIEAGIAKVIVGSTDPNPLVSGKGMELLREAGIKV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  +   E       + T     +  +T+K A+S D  I  +   S  IT   S+   H+
Sbjct: 123 VCPVCSDECAELNEHFFTYIQTGKPFVTIKSAMSLDGKIATSTGQSQWITNESSRRDGHV 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNG------------LQE----HSPMRIILDPHFK 229
           LRA  DA+LVGIGT+LAD+P+L CRL              L E    H P  IILD   +
Sbjct: 183 LRATHDAMLVGIGTILADNPQLNCRLTDSELSDALLDKSILDEPITIHQPDVIILDSLGR 242

Query: 230 LSLDSKIIKTALLAPVIIVTE---------------NDDPVLALAFRKKNINIIYCDCRD 274
               S++ +       I V++                   V +++ RK     I  D + 
Sbjct: 243 TPTTSRVFEINNRKIHIFVSKGCPKDRIQVLEQVGAQVTVVESISTRKSKSTDIVIDIKK 302

Query: 275 LK--KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           L    +LT L   G TS+LVEGG+A+  SF+ ++  D ++ Y    +IG
Sbjct: 303 LSIDDILTKLGELGYTSILVEGGSAIISSFVETKNFDKVVTYIGNTIIG 351


>gi|188534657|ref|YP_001908454.1| Riboflavin biosynthesis protein RibD [Erwinia tasmaniensis Et1/99]
 gi|188029699|emb|CAO97578.1| Riboflavin biosynthesis protein RibD [Erwinia tasmaniensis Et1/99]
          Length = 367

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/330 (36%), Positives = 176/330 (53%), Gaps = 14/330 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL  +R     T+ NP+V C++V+D  ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEVYMARALELARRGRFTTTPNPNVGCVLVRDDQIVGEGYHLRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           +RGAT YVTLEPCSH+GR+PPC   +I  G++RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  SRGATVYVTLEPCSHHGRTPPCCDALIAAGVKRVVTAMQDPNPQVAGRGLYRLQQAGIEV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M  E +     +L R       + LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMQEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPEARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL   GTVLAD+P LT R + L   S           P+R+I+D   +++   
Sbjct: 183 LRAQSSAILSTSGTVLADNPALTVRHDELDSASLADYPVNLLRQPIRVIVDGQNRITPQH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           ++I  A      +   +  P        + I   + D  DL  +L +L  + + SL VE 
Sbjct: 243 RLI--AQPGETWLARTSSCPQQWPENVSQLIVPRHQDRLDLVSMLMLLGKKQINSLWVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           GA  A + + + +VD +I+Y +  ++G+ G
Sbjct: 301 GAQFAGALLQAGVVDELIVYMAPKLLGDAG 330


>gi|238795566|ref|ZP_04639081.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
           mollaretii ATCC 43969]
 gi|238720685|gb|EEQ12486.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
           mollaretii ATCC 43969]
          Length = 369

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 121/331 (36%), Positives = 178/331 (53%), Gaps = 22/331 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     T  NP+V C++V+DG ++G G     G PHAEV AL  AGE+
Sbjct: 4   DEFYMARAFELARMGCFTTPPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 64  AHGATAYVTLEPCSHHGRTPPCADALVAAGVIRVVAAMQDPNPQVAGRGLYKLKQAGIAV 123

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
            RA+S AIL    TVLAD+P LT R + L   +           P+RIILD   +++   
Sbjct: 184 FRAESAAILSTSATVLADNPSLTVRWDELDAETQTLYPRAALRQPIRIILDSQNRVTPQH 243

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSL 290
           K+I+      +  V  ++ P        +NI  +    + +  DL  L+  L  R + S+
Sbjct: 244 KVIQQDGPCWLARVDADEQPW------PENIEQLLLPRHGNGVDLVLLMMQLGKRQINSV 297

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            VE G  +A + + + +VD +ILY +  ++G
Sbjct: 298 WVEAGPQLAGALLEAGVVDELILYIAPKLLG 328


>gi|146310543|ref|YP_001175617.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Enterobacter sp. 638]
 gi|145317419|gb|ABP59566.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Enterobacter sp.
           638]
          Length = 367

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 121/328 (36%), Positives = 183/328 (55%), Gaps = 16/328 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG+++G G     G PHAEV AL  AGE+
Sbjct: 3   DEIYMARALKLAQRGRFTTHPNPNVGCVIVKDGVIVGEGFHYRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPC + +I+ G+ RVV  + DP+ +V+GRGL  L Q+GI V
Sbjct: 63  ARGATAYVTLEPCSHHGRTPPCCEALIDAGVARVVAAMQDPNPQVAGRGLYRLQQEGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M ++ +     +L R      +I LK+  S D    MA   S  +T   S+  V  
Sbjct: 123 SHGLMMADTEALNKGFLKRMRTGFPYIQLKLGASLDGRTAMANGESQWVTSPQSRRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP +T R + L + +           P+RI++D   +++   
Sbjct: 183 LRAQSHAILTSSETVLADDPAMTVRWDELNQDTQALYPQENLRQPLRIVIDSQNRVTPAH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVE 293
           +I++      +   T+ DD       R  +I +          +L +L+G+  V S+ VE
Sbjct: 243 RIVQQPGET-LFARTKEDDRQWPEHVR--SIMVPEHKGHLDLVVLMMLLGKQQVNSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG 321
            G  +A + + + LVD +I+Y +  ++G
Sbjct: 300 AGPTLAGALLQAGLVDELIVYVAPKLLG 327


>gi|269798015|ref|YP_003311915.1| riboflavin biosynthesis protein RibD [Veillonella parvula DSM 2008]
 gi|269094644|gb|ACZ24635.1| riboflavin biosynthesis protein RibD [Veillonella parvula DSM 2008]
          Length = 404

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 127/349 (36%), Positives = 181/349 (51%), Gaps = 34/349 (9%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++   G TS NP V  ++VKD  +IG G     G  HAEV AL +AG+ 
Sbjct: 4   DVVYMKRAIELAKLATGHTSPNPLVGAVVVKDNTIIGEGYHHKAGTAHAEVHALNQAGDN 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSHYG++PPCA  IIE GI +V+V   DP+  VSG+G++ L + GI +
Sbjct: 64  AKGATLYVTLEPCSHYGKTPPCALRIIEAGIAKVIVGSTDPNPLVSGKGMELLREAGIEV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  +   E       + T     +  +T+K A+S D  I  +   S  IT   S+   H+
Sbjct: 124 VCPVCSDECAELNEHFFTYIQTGKPFVTIKSAMSLDGKIATSTGQSQWITNESSRRDGHV 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNG------------LQE----HSPMRIILDPHFK 229
           LRA  DA+LVGIGT+LAD+P+L CRL              L E    H P  IILD   +
Sbjct: 184 LRATHDAMLVGIGTILADNPQLNCRLTDSELSDALLDKSILDEPITIHQPDVIILDSLGR 243

Query: 230 LSLDSKIIKTALLAPVIIVT-----------ENDDPVL----ALAFRKKNINIIYCDCRD 274
               S++         I+V+           EN   ++    +++ RK     +  D + 
Sbjct: 244 TPTTSQVFDVENRKVHILVSKGCPKERIQALENVGTIVTVVESISTRKSKSTDVVIDIKK 303

Query: 275 LK--KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           L    +LT L   G TS+LVEGG+A+  SF+ +   D ++ Y    +IG
Sbjct: 304 LSIDDILTKLGELGYTSILVEGGSAIISSFVETMNFDKVVTYIGNTIIG 352


>gi|261493709|ref|ZP_05990228.1| riboflavin biosynthesis protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261494376|ref|ZP_05990870.1| riboflavin biosynthesis protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310025|gb|EEY11234.1| riboflavin biosynthesis protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310709|gb|EEY11893.1| riboflavin biosynthesis protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 403

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 125/362 (34%), Positives = 188/362 (51%), Gaps = 20/362 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M+ A+  +    G TS NP V C+IVK+G +I  G     G  HAE  A+    E+
Sbjct: 41  DVQYMAYAITLAEKARGWTSPNPLVGCVIVKNGNIIAEGYHQKAGSWHAERNAILNCEED 100

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GATAYVTLEPC H+GR+PPC++ +IE GI++V +   DP+  VSG+G   L   GI +
Sbjct: 101 LTGATAYVTLEPCCHHGRTPPCSELLIERGIKKVFIGSRDPNPLVSGKGAAQLRAAGIEV 160

Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           V+  M +E      IF H   T    KR ++ LK  ++ D  I      S  ITG  ++ 
Sbjct: 161 VEDFMRTECDALNPIFFHYIQT----KRPYVLLKYGMTADGKIATYTGNSKWITGEAARA 216

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V   R +  AI+VG+ TVLADDP L  R+   ++  P+RI+ D   +  LDS++++TA 
Sbjct: 217 NVQKSRHEYSAIMVGVETVLADDPMLNSRMENAKQ--PVRIVCDSQLRTPLDSQLVQTAR 274

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
               II T N+D      +    + I+    R    DL  LL  L   G+ SLL+EGG+ 
Sbjct: 275 QYRTIIATLNNDAKKQAEYTACGVEILVTGERDKRVDLADLLQKLGELGIDSLLIEGGSQ 334

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352
           +  S +   LV+ +  Y +  +IG     +P+    + +    V+      +  G D+ L
Sbjct: 335 LNFSVLEQGLVNRVHCYIAPKLIGGKAAKTPIGGKGIGELAQAVKLRLKSTELLGEDILL 394

Query: 353 EY 354
           +Y
Sbjct: 395 DY 396


>gi|254226773|ref|ZP_04920347.1| riboflavin biosynthesis protein RibD [Vibrio cholerae V51]
 gi|125620711|gb|EAZ49071.1| riboflavin biosynthesis protein RibD [Vibrio cholerae V51]
          Length = 367

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/338 (35%), Positives = 184/338 (54%), Gaps = 25/338 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +AGE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+G+G+Q L
Sbjct: 61  MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120

Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI V+  +++++ +     +L R      ++ LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLDADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R + L               P+R+ILD  
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRG 286
            +L  +  + +T   + + + +EN +    L    KN  +      DL++LL  L   + 
Sbjct: 241 HQLHPELALYQTP-SSVLRVASENAE----LCISAKNGKL------DLRELLAQLAQQQN 289

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           V  + VE G+ +A S I  +LVD IILY +  ++G  G
Sbjct: 290 VNQVWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDG 327


>gi|171463092|ref|YP_001797205.1| riboflavin biosynthesis protein RibD [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171192630|gb|ACB43591.1| riboflavin biosynthesis protein RibD [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 372

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 197/368 (53%), Gaps = 17/368 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D +FMS AL  ++  + L++ NP V C+I K+G +IGRG T   G  HAEVQAL +A
Sbjct: 3   SAVDHQFMSEALSEAQKALYLSNPNPRVGCVIAKEGKIIGRGFTQAAGKAHAEVQALADA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G +A G+T YVTLEPCSH G++PPC   +I     +V+V + DP+  V+G+GL+ L 
Sbjct: 63  KARGNDATGSTIYVTLEPCSHTGKTPPCVDALIAAKPSKVIVAMSDPNPLVAGQGLEKLK 122

Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   +MESE ++    +++R       + +KIA S D    +    S  ITG ++
Sbjct: 123 LAGIEVQYGLMESEAQLLNRGFVSRMTRGLPWVRMKIAASLDGKTALPDGRSQWITGPLA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H  RAQ+ AI+ G+GTV  DDP L  R        P+R I+D   +  +++KI+K 
Sbjct: 183 RADGHHWRAQACAIVTGVGTVKEDDPSLNVR-EVETRRQPVRTIIDSKLETPINAKILKN 241

Query: 240 ALLAPVIIVTENDDP----VLALAFRKKNINIIYCDCR----DLKKLLTILVG-RGVTSL 290
             L+ ++IV  N D       A AF  + I +I         DL  L + L   R +  +
Sbjct: 242 PELSDILIVCANLDKSEMQAKAKAFEARGIQVIAMANAFGKVDLPCLFSYLAKEREMNEI 301

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-GIP--SPLEEGYLEKNFMCVRRDYFG 347
            +E G  +  S +    +D ++LY +  ++G+G G+   S L +    +N+  + +   G
Sbjct: 302 HIEAGFKLNDSMLREDCIDELLLYYAPFLMGDGIGMANVSLLNDLGQRQNWQIIDQALLG 361

Query: 348 SDVCLEYI 355
           SD+ L  I
Sbjct: 362 SDLRLRLI 369


>gi|26987252|ref|NP_742677.1| riboflavin biosynthesis protein RibD [Pseudomonas putida KT2440]
 gi|24981894|gb|AAN66141.1|AE016242_9 riboflavin biosynthesis protein RibD [Pseudomonas putida KT2440]
          Length = 378

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 181/339 (53%), Gaps = 27/339 (7%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            DA +M+ AL  +R  +  T  NP V C+IV+DG V+G G     G PHAEV AL +AGE
Sbjct: 10  LDAHYMARALELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQAGE 69

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            ARGA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV  + DP+ +V+G+GL+ L++ GI 
Sbjct: 70  LARGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGLRRLAEAGIE 129

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   ++E+E +     +L R       +  K+A+S D    MA   S  ITG  +++ V 
Sbjct: 130 VASGVLEAEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARSAVQ 189

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDS 234
            LRA+S  +L    +VLAD+  +T R   L             +P+R+++D   +L L +
Sbjct: 190 RLRARSSVVLTSAASVLADNARMTVRGAELGLDAETTALALSRTPLRVLVDGRLRLPLAA 249

Query: 235 KIIKTALLAPVIIVTE-NDDPVLA------LAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
              +     P ++VT   DDP  A      L+    N  +      DL  LL  L  RGV
Sbjct: 250 PFFQA---GPALVVTAVADDPRYAAAGHELLSLPGDNGQV------DLGALLHALAARGV 300

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
             +L+E GA +  +F    LVD   L+ +   +G    P
Sbjct: 301 NEILLEAGAGLVGAFARQGLVDEYQLFVAGTFLGSQARP 339


>gi|254242738|ref|ZP_04936060.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
           2192]
 gi|126196116|gb|EAZ60179.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
           2192]
          Length = 373

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 122/346 (35%), Positives = 179/346 (51%), Gaps = 33/346 (9%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ D  +M+ AL  +R  +  T  NP V C++VKDG V+G G     G PHAEV AL +
Sbjct: 1   MNAADPLYMARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q 
Sbjct: 61  AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V   ++E+E +     ++ R       + +K+A+S D    MA   S  ITG  +++
Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARS 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRA+S  +L G  T+LADD  L  R + L               +R+++D   ++ 
Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQSLRVLVDGRLRVP 240

Query: 232 LDSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
           L+S   +     P ++ T           +    +LAL   + ++        DL KLL 
Sbjct: 241 LESAFYQA---GPALVATCAAASARERFQDAGHELLALPSAEGHV--------DLHKLLL 289

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            L  RG   +LVE G  +A +F    LVD   L+ +   +G    P
Sbjct: 290 ELAARGANEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARP 335


>gi|328956808|ref|YP_004374194.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Carnobacterium sp. 17-4]
 gi|328673132|gb|AEB29178.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Carnobacterium sp. 17-4]
          Length = 355

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 115/316 (36%), Positives = 181/316 (57%), Gaps = 12/316 (3%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAY 73
           AL  +R   G T+ NP V  +IVK G VIG+G     G PHAEV A+  A ++  GAT Y
Sbjct: 2   ALDLARKGKGWTTPNPLVGAVIVKGGRVIGQGYHQKYGQPHAEVNAIVSAKKDVTGATLY 61

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMES 132
           VTLEPCSH+G++PPC+  +I+  I+RVVV   DP+  V+G+G++ L   GI +V  ++E 
Sbjct: 62  VTLEPCSHFGKTPPCSDLLIDKNIKRVVVGTLDPNPLVAGKGIERLRSNGIEVVTGVLEE 121

Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
           E +     ++   V K   + +K A+S D  I      S  I+G  S+ QVH LR +   
Sbjct: 122 ESQKLNEIFIKYIVTKEPFVVMKNAMSLDGKIATVTGESQWISGESSRKQVHSLRHELAG 181

Query: 193 ILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE-- 250
           I+VGI T++ DDP+LT R   L   +P+RI++D   ++ + SK++     A  I+ T   
Sbjct: 182 IMVGIETIIKDDPQLTSRT--LNSRNPIRIVVDSQLRIPIASKVLTQQDKAKTIVATTKR 239

Query: 251 -NDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
            N++ +  L  ++  I +I    +    DL++L+ ++  +G+ S+L+EGGA +  S +  
Sbjct: 240 ANNEKLETL--KQMGIEVIVTKEKYGRVDLQELMKVVGAKGIDSILLEGGATLNFSALEE 297

Query: 306 RLVDSIILYRSQIVIG 321
            +VD I  Y +  +IG
Sbjct: 298 GIVDKIQSYIAPKIIG 313


>gi|302036973|ref|YP_003797295.1| bifunctional daminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Candidatus Nitrospira defluvii]
 gi|300605037|emb|CBK41370.1| fused Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Candidatus Nitrospira defluvii]
          Length = 373

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 122/330 (36%), Positives = 179/330 (54%), Gaps = 11/330 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +SS D  +M+ ALR +    G TS NP V  L+V  G ++G+G     G PHAEV AL +
Sbjct: 1   MSSRDREYMTLALRLAAKGRGSTSPNPMVGALVVTRGRIVGQGSHRKAGGPHAEVIALSQ 60

Query: 63  AGEEARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           AG  A+G T YVTLEPCSH   R+PPC   ++  G+RRVVV + DP+ +V G G+  L++
Sbjct: 61  AGSRAKGGTLYVTLEPCSHLKKRTPPCVPLVMASGVRRVVVAMVDPNPQVKGNGVAQLTR 120

Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI VD    E+E      AYL      R    LK  ++ D  I  A   S  IT  +S+
Sbjct: 121 AGIRVDVGCCEAEATQLNQAYLHWVKTGRPFTILKAGMTLDGQIATASGESQWITDEVSR 180

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNG----LQEHSPMRIILDPHFKLSLDSKI 236
            Q H LRA  DAILVGIGTVL D+P+LT R+           P+RI++D   ++ L +K+
Sbjct: 181 QQAHRLRADVDAILVGIGTVLRDNPQLTARVTDDPPRTTGRQPLRIVVDSRLRIPLKAKV 240

Query: 237 IKTALLAPVIIVTENDDPVLALA-FRKKNINIIYCDCRDLKKLLTILVGR----GVTSLL 291
           ++    A  +I T        +   RK+ I+++          L +L  R    GVT++L
Sbjct: 241 LEHQQTAHTLIATTAAASARKVERLRKRGIDVLVLPKAGGHVNLPVLWARLGQLGVTTVL 300

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           VEGG+ +  + + + L   ++ Y + +++G
Sbjct: 301 VEGGSDLNAAVLQAGLPQRLMCYVAPLLLG 330


>gi|210621234|ref|ZP_03292540.1| hypothetical protein CLOHIR_00483 [Clostridium hiranonis DSM 13275]
 gi|210154845|gb|EEA85851.1| hypothetical protein CLOHIR_00483 [Clostridium hiranonis DSM 13275]
          Length = 384

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 125/367 (34%), Positives = 193/367 (52%), Gaps = 13/367 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + ++M  AL  ++  VG  + NP V  +IVK+G +IG G     G  HAE  AL    E 
Sbjct: 21  ECKYMQLALENAKKGVGFVNPNPMVGAVIVKNGKIIGEGYHKKYGGLHAERNALNNCSEN 80

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            + AT YVTLEPC HYG++PPC   IIE  I++VV+   DP+ ++SG+ L  L ++GI V
Sbjct: 81  PKDATMYVTLEPCCHYGKTPPCTDAIIENKIKKVVIASLDPNPKMSGKSLDILKKRGIKV 140

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           ++ ++E+EG      +      K+  +  K A++ D  I      S  ITG  ++  V  
Sbjct: 141 EKGLLENEGDKLNETFRKFITTKKPFVLFKYAMTMDGKIATKINESKWITGEEARLNVQK 200

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            R +   I+VG+ TV+ D+P L C++ NGL   +P+RII D + +  + SKI+ TA   P
Sbjct: 201 TRHKYSGIMVGVDTVIIDNPMLNCKIENGL---NPIRIICDTNLRTPIGSKIVSTAKEIP 257

Query: 245 VIIVTENDDPVLALAFRKKNINIIY----CDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
            II T +DD +    + +K   I+         DL+ L++ L  + + S+L+EGGA +A 
Sbjct: 258 TIIATCSDDEIKKEQYIEKGCEILQIKIKKKKIDLQDLMSKLGEKKIDSILLEGGATLAW 317

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-LEKNFMCVRRD---YFGSDVCLEYIG 356
           S     +VD I  Y +  + G  G  + L EG    K+ + ++      FG D  +E   
Sbjct: 318 SAFERGIVDKIQAYIAPKIFGGNGKTAVLGEGIDFPKDAIMLKNSEIFRFGDDFMIESDV 377

Query: 357 KNLCLQE 363
              C QE
Sbjct: 378 TYKCSQE 384


>gi|317492964|ref|ZP_07951388.1| riboflavin biosynthesis protein RibD [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919086|gb|EFV40421.1| riboflavin biosynthesis protein RibD [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 373

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 127/334 (38%), Positives = 179/334 (53%), Gaps = 22/334 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     T+ NP+V C+IV +  ++G G     G PHAEV AL  AG++
Sbjct: 8   DEFYMARAFELARRGRFTTTPNPNVGCVIVLNDEIVGEGYHLRAGEPHAEVHALHMAGDK 67

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q GI V
Sbjct: 68  ARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPNVAGRGLFKLQQAGIDV 127

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R       + LK+A S D    MA   S  IT   S+  V  
Sbjct: 128 SHGLMMNEAEAVNRGFLKRMRTGFPFVQLKMAASLDGRTAMASGESQWITSAASRQDVQR 187

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL----QE-------HSPMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP LT R + L    Q+         P+R+I+D   +++ + 
Sbjct: 188 YRAQSSAILSSSATVLADDPSLTVRWDELDVTTQQAYPRENLRQPLRVIIDSQNRITTEH 247

Query: 235 KIIKTA---LLAPVIIVTENDDPVLALAFRKKNINII-YCDCRDLKKLLTILVGRGVTSL 290
           K+I  A   LLA +      DD  L      K + I  Y    DL  L+  L    + S+
Sbjct: 248 KLISQAGETLLARI----HPDD--LHWPENVKQLAIPQYGQGIDLVVLMMQLGKLQINSV 301

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            VE GA++A + + + LVD +I+Y +  ++G+  
Sbjct: 302 WVEAGASLAGALLQAGLVDELIIYLAPKLLGDAA 335


>gi|57234067|ref|YP_181903.1| riboflavin biosynthesis protein RibD [Dehalococcoides ethenogenes
           195]
 gi|57224515|gb|AAW39572.1| riboflavin biosynthesis protein RibD [Dehalococcoides ethenogenes
           195]
          Length = 365

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 121/322 (37%), Positives = 174/322 (54%), Gaps = 10/322 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           ++MS AL  ++  +G  S NP+V  +IVK+G V+G+G T   G  HAE+ AL++A E+A+
Sbjct: 2   KYMSQALSLAKLAIGQVSPNPAVGAVIVKNGEVVGQGFTQPPGGDHAEIVALKQAAEKAK 61

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127
           GA  YVTLEPC H GR+PPC   IIE GI+ V +   D +  VSG+G + L   GI V  
Sbjct: 62  GAALYVTLEPCCHQGRTPPCTVAIIESGIKEVYIATLDDNPLVSGKGKKELEDAGIKVHL 121

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            MME E +    AY          +T K A+S D   G     S  I+   S++  H +R
Sbjct: 122 GMMEREARQMNEAYFKYITTGMPFVTAKYAMSLDGKTGTRTGDSKWISNEESRHFAHYIR 181

Query: 188 AQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
             SD I+ G+ T+L DDP LT R+N    G     P R+I+D + +  L S +       
Sbjct: 182 HISDVIMAGLNTILKDDPHLTARVNCGRGGTSHCQPTRVIIDDNGRAPLSSNVFHVP-GN 240

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYC-DCR---DLKKLLTILVGRGVTSLLVEGGAAVA 299
            ++ V +   P    A+ +    ++   D R   DLK LL  L   GVTS+LVEGG  V 
Sbjct: 241 TIVAVAKGLTPEEKQAYDEVGAKVVEMPDERGLVDLKSLLRYLGQNGVTSVLVEGGGIVL 300

Query: 300 HSFINSRLVDSIILYRSQIVIG 321
            S  + +LVD ++++ + I+IG
Sbjct: 301 GSLFDLKLVDKVLVFVAPIIIG 322


>gi|300715569|ref|YP_003740372.1| riboflavin biosynthesis protein RibD [Erwinia billingiae Eb661]
 gi|299061405|emb|CAX58515.1| Riboflavin biosynthesis protein RibD [Erwinia billingiae Eb661]
          Length = 368

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 114/328 (34%), Positives = 178/328 (54%), Gaps = 14/328 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL  +R     T+ NP+V C+IV+DG+++G G     G PHAEV AL  AG++
Sbjct: 3   DEIWMARALELARRGRFTTTPNPNVGCVIVRDGVMVGEGYHFRAGEPHAEVHALRMAGDK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RV+  + DP+  V+GRGL  L Q GI V
Sbjct: 63  AQGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVIAAMQDPNPEVAGRGLYRLQQAGIEV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M  E +     +L R       + LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMQEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMANGESQWITSAEARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLAD+P LT R   L   +           P+R+++D   +++ + 
Sbjct: 183 LRAQSSAILSTSATVLADNPSLTVRWQDLAADTQAAYAEADLRQPVRVVIDSQNQVTPEH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           ++I  +      +  +  D +      ++ +   + D  DL  L+ +L  R + ++ VE 
Sbjct: 243 RLISQS--GETWLARQQADNLNWPENVEQFLVPRHNDHTDLVSLMMLLGRRQINTVWVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGE 322
           GA +A + + + +VD +I+Y +  ++G+
Sbjct: 301 GAKLAGALLTAGVVDELIVYMAPKLLGD 328


>gi|296332262|ref|ZP_06874724.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674964|ref|YP_003866636.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296150576|gb|EFG91463.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413208|gb|ADM38327.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 361

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 119/325 (36%), Positives = 168/325 (51%), Gaps = 12/325 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL  ++   G T +NP V  ++VKDG ++G G     G  HAEV A+  AG  A+G
Sbjct: 5   YMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGSHAKG 64

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI----- 124
           A  YVTLEPCSHYG++PPCA+ II  GI+RV V + DP+  V+GRG+  + + GI     
Sbjct: 65  ADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMIEKAGIEVKEG 124

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           I+    E   + FLH   T       ++TLK A S D     +   S  IT   ++    
Sbjct: 125 ILADQAEKLNEKFLHFMRT----GLPYVTLKAAASLDGKTATSTGDSKWITSEAARQDAQ 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             R    +ILVG+GTV+AD+P LTCRL  + +  P+R+ILD    +  D+++I       
Sbjct: 181 QYRKTHQSILVGVGTVIADNPSLTCRLPDVTKQ-PVRVILDTALSIPEDTQVICDQAAPT 239

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHSF 302
            I  T   D           +NI   +   ++   +L IL   GV S+ VEGG+AV  SF
Sbjct: 240 WIFTTARADEEKKKRLSAFGVNIFTLETERIQVPDVLKILAEEGVMSVYVEGGSAVHGSF 299

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327
           +       II Y +  +IG    PS
Sbjct: 300 VKEGCFQEIIFYFAPKLIGGTHSPS 324


>gi|238791408|ref|ZP_04635046.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
           intermedia ATCC 29909]
 gi|238729024|gb|EEQ20540.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
           intermedia ATCC 29909]
          Length = 369

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 121/331 (36%), Positives = 177/331 (53%), Gaps = 22/331 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     T  NP+V C++V+DG ++G G     G PHAEV AL  AGE+
Sbjct: 4   DEFYMARAFELARLGRFTTPPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+G +PPCA  ++  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 64  ARGATAYVTLEPCSHHGCTPPCADALVAAGVIRVVAAMQDPNPQVAGRGLYKLKQAGIAV 123

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  +M ++ +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 124 DHGLMLAQAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
            RA+S AIL    TVLADDP LT R + L   +           P+RIILD H +++ + 
Sbjct: 184 FRAESSAILSTSATVLADDPSLTVRWSELDAQTQALYPQDSLRQPVRIILDSHNRVTPEH 243

Query: 235 KIIKTALLAPVIIVTENDDP----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           ++ +   L  +  V  +  P    V  L   +    +      DL  L+  L  R + S+
Sbjct: 244 QVTQQNGLCWLARVEADQQPWPDNVEQLLLPRHGGGV------DLVLLMMQLGKRQINSV 297

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            VE G  +A + + + +VD +ILY +  ++G
Sbjct: 298 WVEAGPQLAGALLQAGVVDELILYIAPKLLG 328


>gi|325508006|gb|ADZ19642.1| Riboflavin biosynthesis protein RIBD (pirimidine deaminase and
           pirimidine reductase) [Clostridium acetobutylicum EA
           2018]
          Length = 365

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 112/322 (34%), Positives = 178/322 (55%), Gaps = 6/322 (1%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            +  FM  AL  +    G  + NP V  +IVKD  ++G G     G  HAEV AL  AG+
Sbjct: 1   MNEAFMKRALEIAEKGSGYVNPNPMVGAVIVKDNKIVGEGYHEKFGGNHAEVNALNMAGK 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A G+  YVTLEPCSHYG++PPCA  +++ GI+RV++ ++DP+  VS +G++ L + GI 
Sbjct: 61  DAEGSELYVTLEPCSHYGKTPPCALAVVKAGIKRVIIAMEDPNPLVSTKGIKILKENGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           ++  +M+ E +     ++     KR  IT+K+A + D  I      S  I+G  S+  VH
Sbjct: 121 VITGVMKKESEKLNEVFIKYITTKRPFITMKMASTLDGKICTVSGESRWISGQTSRKYVH 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR++  +I+VG+GT + D+P LT R+ G    SP+ II+D   ++  D +I  T     
Sbjct: 181 HLRSKYMSIMVGVGTAINDNPLLTTRIEGENVRSPIAIIVDSKLRVPKDLRIFNTLQERK 240

Query: 245 VII-VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299
           +II  TE  D           ++II    +    +L  LL  L   G+ S+L+EGG+ + 
Sbjct: 241 IIIATTEYADKNKENELINMGVSIIKTPNKNGRVNLDYLLDELGKIGIDSVLLEGGSELN 300

Query: 300 HSFINSRLVDSIILYRSQIVIG 321
            SFI    +D I+ + + +++G
Sbjct: 301 FSFIKEENIDKIMCFIAPMIVG 322


>gi|237809265|ref|YP_002893705.1| riboflavin biosynthesis protein RibD [Tolumonas auensis DSM 9187]
 gi|237501526|gb|ACQ94119.1| riboflavin biosynthesis protein RibD [Tolumonas auensis DSM 9187]
          Length = 370

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 110/330 (33%), Positives = 179/330 (54%), Gaps = 14/330 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D  +MS AL+ +      TS NP+V C+IV DG ++G G     G PHAEV AL  A
Sbjct: 3   SAEDHLYMSRALQLAEQGRFTTSPNPNVGCVIVADGRIVGEGFHLRAGEPHAEVHALRMA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G++ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  ++DP+ +VSGRG++ L+  G
Sbjct: 63  GDKARGATAYVTLEPCSHFGRTPPCADALVNAGVARVVAAMEDPNPQVSGRGMRRLADAG 122

Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + +   +++++ +     ++ R      ++ LK+A S D    +A   S  IT   ++  
Sbjct: 123 VTIQTGLLQAQAEALNPGFIKRMRHGLPYVRLKLAASLDGRTALANGQSQWITSPAARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLS 231
           V   RAQS AIL G  TVL DDP L  R   L               P+RII+D   ++ 
Sbjct: 183 VQRWRAQSSAILTGADTVLTDDPSLNVRWEQLPLSVQQCYAKDNVRQPIRIIIDSRQRIV 242

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
             + +   ++   + +    +        ++ +  +      DL +L+  L  R +  + 
Sbjct: 243 PSAHLF--SIPGEIWLARHKEQGQWPEQVQQLSTPLADSGKLDLVQLMQTLAQRHINDIW 300

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           VE GA++A + +++ LVD +++Y +  ++G
Sbjct: 301 VEAGASLAGALMSAGLVDELMVYLAPKLMG 330


>gi|237742612|ref|ZP_04573093.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium sp. 4_1_13]
 gi|229430260|gb|EEO40472.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium sp. 4_1_13]
          Length = 369

 Score =  192 bits (488), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 119/367 (32%), Positives = 202/367 (55%), Gaps = 16/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D ++M+ A+  ++  +G  + NP V  +IVKDG +IG G     G PHAEV AL EA E
Sbjct: 5   LDEKYMARAIELAKRGIGGVNPNPLVGAVIVKDGKIIGEGWHKKFGGPHAEVWALNEAEE 64

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            A GAT YVTLEPCSH G++PPCA+ I+E GI+R VV   DP+  V+G+G++ +   GI 
Sbjct: 65  NAEGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVVACIDPNPLVAGKGIKIIENAGIT 124

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
           V   ++E E K  ++    + +E R  ++ LK  ++ D  I      S  IT  I++ +V
Sbjct: 125 VKLGVLEKEAKE-INKIFFKYIENRIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKV 183

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKT 239
             LR +  AI+VGI T+L D+P L  RL+    G+++ +P R+++DP+ +  +++K +  
Sbjct: 184 QFLRTKFMAIMVGINTILKDNPSLDSRLDEKKFGIEKRNPFRVVIDPNLESPIEAKFLNF 243

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNIN--IIYCDCR--DLKKLLTILVGRGVTSLLVEGG 295
                 II+T ND+  L    + KN+    I+ + +   ++ +L  L    + S+L+EGG
Sbjct: 244 N-DGKAIIITSNDNKGLEKIEKYKNLGTRFIFLEGKIFKMEDILKELGKLEIDSVLLEGG 302

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           + +  +     ++D+  ++ +  +IG+     P   G+   NF  +   +  S+      
Sbjct: 303 SGLISTAFKENIIDAGEIFIAPKIIGDSS-AVPFINGF---NFDSMEDVFKLSNPKFNIY 358

Query: 356 GKNLCLQ 362
           G N+ ++
Sbjct: 359 GDNISIE 365


>gi|148545799|ref|YP_001265901.1| riboflavin biosynthesis protein RibD [Pseudomonas putida F1]
 gi|148509857|gb|ABQ76717.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Pseudomonas putida F1]
          Length = 376

 Score =  192 bits (488), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 181/339 (53%), Gaps = 27/339 (7%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            DA +M+ AL  +R  +  T  NP V C+IV+DG V+G G     G PHAEV AL +AGE
Sbjct: 8   LDAHYMARALELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQAGE 67

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            ARGA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV  + DP+ +V+G+GL+ L++ GI 
Sbjct: 68  LARGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGLRRLAEAGIE 127

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   ++E+E +     +L R       +  K+A+S D    MA   S  ITG  +++ V 
Sbjct: 128 VASGVLEAEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARSAVQ 187

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDS 234
            LRA+S  +L    +VLAD+  +T R   L             +P+R+++D   +L L +
Sbjct: 188 RLRARSSVVLTSAASVLADNARMTVRGAELGLDAETAALALSRTPLRVLVDGRLRLPLAA 247

Query: 235 KIIKTALLAPVIIVTE-NDDPVLA------LAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
              +     P ++VT   DDP  A      L+    N  +      DL  LL  L  RGV
Sbjct: 248 PFFQA---GPTLVVTAVADDPRYAAAGHELLSLPGDNGQV------DLGALLHALAARGV 298

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
             +L+E GA +  +F    LVD   L+ +   +G    P
Sbjct: 299 NEVLLEAGAGLVGAFARQGLVDEYQLFVAGTFLGSQARP 337


>gi|237747123|ref|ZP_04577603.1| riboflavin biosynthesis protein RibD [Oxalobacter formigenes
           HOxBLS]
 gi|229378474|gb|EEO28565.1| riboflavin biosynthesis protein RibD [Oxalobacter formigenes
           HOxBLS]
          Length = 374

 Score =  192 bits (488), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 108/322 (33%), Positives = 176/322 (54%), Gaps = 12/322 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
           FM  AL  +R    L S NP V C+IV++G ++G G T   G  HAE++AL EA   GE+
Sbjct: 19  FMKRALELARNCSVLVSPNPKVGCVIVRNGHILGEGYTRPAGKNHAEIEALNEAVSRGED 78

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            RGAT YVTLEPC+H+GR+PPCA  ++  G+ RV+  ++DP+  V+G+GL+ L   GI +
Sbjct: 79  CRGATVYVTLEPCAHFGRTPPCADALVRAGVSRVIAAMEDPNPLVAGKGLEKLKAAGIHV 138

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  ++  E +     +L+R    R  + +K+A S D    ++   S  IT   ++   H 
Sbjct: 139 ICGILADEAREMNRGFLSRVERGRPWVRMKVAASLDGKTALSNGESQWITSEKAREDGHR 198

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R ++DAI+ GIGTV+ D+P L  RL       P+RI++D   K  LD+++++       
Sbjct: 199 WRMRADAIMTGIGTVIQDNPRLNVRLPDAVRQ-PVRIVVDSQLKTPLDARVLEE---GKT 254

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I + N  P    A ++K + +          DL +++  L  + +  + VE GA +  +
Sbjct: 255 WIFSANASPYKIGAMQEKGVRVFSTINNTGRVDLAEMMETLAKQEINEIHVEAGATLNGA 314

Query: 302 FINSRLVDSIILYRSQIVIGEG 323
            +   LVD +++Y +   +G G
Sbjct: 315 LMQESLVDEMLIYLAPCFLGSG 336


>gi|307262983|ref|ZP_07544605.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306871609|gb|EFN03331.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 364

 Score =  192 bits (488), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 120/363 (33%), Positives = 195/363 (53%), Gaps = 20/363 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++  +G T+ NP V C+IVK+G ++  G     G  HAE  A+    E+
Sbjct: 3   DLDYMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLHCKED 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GATAYVTLEPC H+GR+PPC+  +IE GI++V +   DP+  V+GRG   L Q G+ +
Sbjct: 63  LSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGANQLRQAGVEV 122

Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           V+ +++ E      IF H   T    KR ++ +K A++ D  I      S  ITG  ++ 
Sbjct: 123 VEGLLKEECDALNPIFFHYIQT----KRPYVLMKYAMTADGKIATGSGESKWITGESARA 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +V   R Q  AI+VG+ TVLAD+P L  R+   ++  P+RI+ D   +  LD ++++TA 
Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQ--PVRIVCDSQLRTPLDCQLVQTAK 236

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
               +I T  DD      FR   + ++ C  R    DL+ LL  L    + SLL+EGG++
Sbjct: 237 EYRTVIATVCDDLQKVEQFRPLGVEVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352
           +  S + S +V+ +  Y +  ++G     +P+    +++    V+      +  G D+ L
Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356

Query: 353 EYI 355
           +Y+
Sbjct: 357 DYV 359


>gi|227358137|ref|ZP_03842478.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Proteus mirabilis ATCC 29906]
 gi|227161473|gb|EEI46510.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Proteus mirabilis ATCC 29906]
          Length = 385

 Score =  192 bits (488), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 125/335 (37%), Positives = 176/335 (52%), Gaps = 26/335 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  +      TS NP+V C+IVK+G +IG G   + G PHAEV AL  AGE 
Sbjct: 18  DETYMRRAIELAALGRFTTSPNPNVGCVIVKEGKIIGEGYHHHAGGPHAEVNALNMAGEN 77

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YVTLEPCSH+G++PPCA  +I  G++RVV  + DP+ +V+GRGL  L   GI V
Sbjct: 78  AKGATVYVTLEPCSHFGKTPPCADALINAGVKRVVAAMQDPNPQVAGRGLHKLVAAGIDV 137

Query: 127 DR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
               +M+   K+ +  +  R      +I LK+A S D    +A   S  IT   S+  V 
Sbjct: 138 SHGVLMQEAEKLNI-GFFKRMRTGFPYIQLKLAASLDGKTALASGESQWITSNASRQDVQ 196

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLSLD 233
             RAQ+ AIL    TVLADDP +  R   L +             P+RII D   +++ D
Sbjct: 197 NFRAQASAILTTSATVLADDPAMNVRWEVLSDEIKAIYPLESLRQPIRIITDSQNRVTPD 256

Query: 234 SKIIKTA---LLAPVIIVTEN---DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
            KI + A   LLA      E+   D   + L    KN ++      DL  L+  L  R +
Sbjct: 257 YKITQLAGECLLARTHSQQEDWQGDVSEILLPTNGKNSSV------DLVLLMMQLGKRNI 310

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
            S+ VE GA  A + +   LVD +I+Y +  ++G+
Sbjct: 311 NSIWVESGAHFAGALLELGLVDELIIYIAPKILGD 345


>gi|319942892|ref|ZP_08017175.1| riboflavin biosynthesis protein RibD [Lautropia mirabilis ATCC
           51599]
 gi|319743434|gb|EFV95838.1| riboflavin biosynthesis protein RibD [Lautropia mirabilis ATCC
           51599]
          Length = 385

 Score =  192 bits (488), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 121/329 (36%), Positives = 178/329 (54%), Gaps = 18/329 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D R M  A+  +   V  T  NP V C+IV+DG V+G G     G PHAEV AL++AGE 
Sbjct: 6   DRRAMQRAIDLAWQGVNTTMPNPRVGCVIVRDGEVVGEGWHRRAGEPHAEVLALQQAGER 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+ PCA  ++E G+ RVV  ++DP+  V+G+GL  L   GI V
Sbjct: 66  ARGATAYVTLEPCSHHGRTGPCADRLVEAGVARVVAAMEDPNPLVNGQGLGRLRAAGIDV 125

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E +     +++R    R  + LK A S D  I +    S  ITG  ++   H 
Sbjct: 126 RCGLLEEEARALNEGFISRMQRGRPWVRLKAATSLDGFIALPDGESQWITGEAARTDGHA 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA--LLA 243
            RA++ AIL G GTV AD+P LT R +   E  P+R+++D   ++S  + I       +A
Sbjct: 186 WRARASAILTGSGTVQADNPALTVR-HVATERQPVRVLVDARLQVSEHAAIFGPGETWVA 244

Query: 244 PVIIVTENDDPVLALAFRK----KNINIIY---CDCR--DLKKLLTILVGRGVTSLLVEG 294
             +     DD       R+    + + ++Y    D R  DL  L+  +   G   + VE 
Sbjct: 245 HAMPPDWPDD-----GHRQRLLDRGVRLLYLPAADGRHVDLPALMRAMGEAGFNEVHVEA 299

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GA +  + I +  VD ++LY +  ++G+G
Sbjct: 300 GAGLNAALIQAGCVDELLLYVAPALLGQG 328


>gi|168187451|ref|ZP_02622086.1| riboflavin biosynthesis protein RibD [Clostridium botulinum C str.
           Eklund]
 gi|169294672|gb|EDS76805.1| riboflavin biosynthesis protein RibD [Clostridium botulinum C str.
           Eklund]
          Length = 372

 Score =  192 bits (488), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 136/374 (36%), Positives = 193/374 (51%), Gaps = 18/374 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            + +FM  A+  S+   G T  NP V  +IVKD  +IG+G     G  HAEV AL+ A E
Sbjct: 1   MELKFMKKAIELSKLGAGYTYPNPLVGAVIVKDNKIIGQGYHERFGGLHAEVNALKNATE 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +  GAT YVTLEPCSHYG++PPCA  I++ GI+ V+V + DP+  V+GRG+  L + GI 
Sbjct: 61  DVTGATMYVTLEPCSHYGKTPPCANTIVKSGIKEVIVGMRDPNELVAGRGINILKENGIK 120

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   + E E K     ++     K+    LK A++ D  I      S  I+  IS+  VH
Sbjct: 121 VTVGIFEEEIKKINEIFIKYITTKKPFCILKTAMTLDGKIATVTGDSKWISNEISRQYVH 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            +R +   I+VGIGTVL DDP LT RL         RII+D   ++ L+SK++       
Sbjct: 181 KIRHRVAGIMVGIGTVLKDDPSLTTRLKEKAGRDATRIIVDSKGRIPLNSKVLNLDSKEK 240

Query: 245 VIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299
            II T    D       +KK   +I    +    DL+ L+  L    + S+L+EGG  + 
Sbjct: 241 TIIATTKLADKEKIDEIKKKGAEVIITPIKNGKVDLRFLMNELGKINIDSILLEGGGTLN 300

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGYLEKN------FMCVRRDYFGSDVCL 352
           +S +N  +VD +I + S  +IG     +P+  EG   KN      F  +    F  DV +
Sbjct: 301 YSALNEGIVDKVISFISPKIIGGQDAKTPVAGEGI--KNISDAVTFHNIEISRFEEDVVI 358

Query: 353 E-YIGK--NLCLQE 363
           E YI K   +C QE
Sbjct: 359 EGYIKKENKVCSQE 372


>gi|294648973|ref|ZP_06726421.1| riboflavin biosynthesis protein RibD [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292825108|gb|EFF83863.1| riboflavin biosynthesis protein RibD [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 366

 Score =  192 bits (488), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 125/358 (34%), Positives = 195/358 (54%), Gaps = 24/358 (6%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  A+  +R     T  NP+V C+IVKDG ++G G     G PHAEV AL +AGE A+ 
Sbjct: 15  WMQRAIDLARLGQYSTKPNPNVGCVIVKDGQILGEGFHPKAGQPHAEVFALRQAGENAKD 74

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           AT YVTLEPC+HYGR+PPCA+ +++  +++VV+   DP+  V+G+G++ L   GI V+  
Sbjct: 75  ATVYVTLEPCAHYGRTPPCAEALVKAQVKKVVIACSDPNPLVAGKGVKILQDAGIEVETG 134

Query: 130 MESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + +E    L+  +L        ++ LKIA S D    MA   S  ITG +++  V   RA
Sbjct: 135 VCTENAKGLNLGFLKAMSTGLPYVRLKIASSLDGRTAMASGESKWITGTLARQDVQHWRA 194

Query: 189 QSDAILVGIGTVLADDPELTCR-LNGLQEHS---PMRIILDPHFKLSLDSKIIKTALLAP 244
            S A++ GI TVLADD EL  R L G+  ++   P RIILD   +L L +KI+K      
Sbjct: 195 ISGAVITGIQTVLADDCELNVRVLEGVDLYTVVQPKRIILDRQGQLPLTAKILK------ 248

Query: 245 VIIVTENDDPVLALA-FRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAH 300
                 N + V+ +  FR++  ++ +I    + L +LL  L  +  +  +LVE GA ++ 
Sbjct: 249 ------NPETVMVMTPFRQELADLGVIQLSLQPLNQLLQTLSQQYQIYDVLVEAGATLST 302

Query: 301 SFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           +F+   LVD +I Y +  ++G+       +   +   ++ F  V     G D+ L  +
Sbjct: 303 AFLQQGLVDEMISYVAPTLLGQSARAMFNAEFSKMAEQRRFELVDVTQLGQDIRLRLL 360


>gi|126699306|ref|YP_001088203.1| riboflavin biosynthesis protein [Clostridium difficile 630]
 gi|255100831|ref|ZP_05329808.1| riboflavin biosynthesis protein [Clostridium difficile QCD-63q42]
 gi|255306720|ref|ZP_05350891.1| riboflavin biosynthesis protein [Clostridium difficile ATCC 43255]
 gi|115250743|emb|CAJ68567.1| Riboflavin biosynthesis protein ribD [Includes:
           Diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
           5-amino-6-(5-phosphoribosylamino)uracil reductase]
           [Clostridium difficile]
          Length = 370

 Score =  192 bits (488), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 114/326 (34%), Positives = 171/326 (52%), Gaps = 6/326 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++   G  + NP V C+IVKD  +IG+G     G  HAEV A+  A + 
Sbjct: 10  DIYYMKKAIELAKNGEGFVNPNPLVGCVIVKDSNIIGKGYHEKFGSNHAEVNAINSAKQS 69

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            + +T YV LEPCSHYG++PPC   II+  I+RVV+   DP+  V G G++ L    I V
Sbjct: 70  LKDSTLYVNLEPCSHYGKTPPCVDKIIQNKIKRVVISTLDPNPLVCGNGVKKLKDNNIDV 129

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E +    A+      KR    +K AVS D  I      S  I+   S+   H 
Sbjct: 130 TVGILEDEARDLNEAFFYHIKNKRPLCIVKSAVSLDGKIATKSLESKWISNESSRYLTHK 189

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R +  +I+VGI TVL D+P LTCRLN  +   P RI++D H KL L+S ++K    +  
Sbjct: 190 YRNKYQSIMVGINTVLNDNPLLTCRLNQEKVSHPTRIVIDTHLKLPLNSNLVKDK-TSKT 248

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           I+ T   + +     ++ N+  I    +    DL+ ++  L    + S+LVEGGA +  S
Sbjct: 249 IVFTCCKESIKLSMLKENNVETIISPSKNNLVDLEFVMYKLGELNIDSVLVEGGATLNDS 308

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS 327
              ++LVD + L+ S  +IG    P+
Sbjct: 309 LFRNKLVDKVKLFLSPKIIGGKDAPT 334


>gi|269121379|ref|YP_003309556.1| riboflavin biosynthesis protein RibD [Sebaldella termitidis ATCC
           33386]
 gi|268615257|gb|ACZ09625.1| riboflavin biosynthesis protein RibD [Sebaldella termitidis ATCC
           33386]
          Length = 363

 Score =  192 bits (488), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 116/323 (35%), Positives = 181/323 (56%), Gaps = 10/323 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M  AL  +   +G  + NP V  ++VKDG V+G+G     G PHAEV AL+EAG+ 
Sbjct: 2   DKKYMEMALEIAEKGLGHVNPNPLVGAVVVKDGTVVGKGYHGVYGGPHAEVYALDEAGKS 61

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GA  YVTLEPCSHYG++PPCA+ IIE GI+R  V   DP+  VSG+G++ L +  I V
Sbjct: 62  AEGADIYVTLEPCSHYGKTPPCAKKIIESGIKRCFVGSIDPNPLVSGKGIEMLKENDIEV 121

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +++ E      A+     EK  ++ LK A++ D  I      S  I+   ++ +V  
Sbjct: 122 HTGVLKEECDNINKAFFKYIKEKIPYLFLKCAITLDGKIASRNGDSKWISNETAREKVQF 181

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            R +   I+VGIGTVL D+P LT R+ NG+   +P+RII+DPH K++ +  II       
Sbjct: 182 YRNKFMGIMVGIGTVLNDNPRLTARIENGV---NPLRIIVDPHLKVNTELNIISNNYDKK 238

Query: 245 VIIVT-ENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL---VGRG-VTSLLVEGGAAVA 299
            II+T EN+      +  +    I +    D +  ++ +   +GR  + S+L+EGG  + 
Sbjct: 239 TIIITSENNTGTAKYSELENEFGIKFITLPDYEFSVSDILRELGRAKIDSVLLEGGEKMI 298

Query: 300 HSFINSRLVDSIILYRSQIVIGE 322
               + +L+D   ++ S  ++G+
Sbjct: 299 SKAFSEKLIDGGEIFISDKILGD 321


>gi|159029666|emb|CAO87744.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 386

 Score =  192 bits (488), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 126/359 (35%), Positives = 189/359 (52%), Gaps = 14/359 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           + FD + M   L  +R  +G TS NP V  +IV++GI+IG G     G PHAEV AL +A
Sbjct: 26  TEFDRKMMQRCLTLARQALGRTSPNPLVGSVIVQEGIIIGEGFHPGAGQPHAEVLALRQA 85

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            E+ARGAT YV LEPC+HYGR+PPC++ I+  GI++VVV + DP+  V+G+G+Q L+  G
Sbjct: 86  AEKARGATLYVNLEPCNHYGRTPPCSEAIVRAGIKKVVVGMIDPNPLVAGKGIQRLASAG 145

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  + ESE +     ++ R   K+    LK A++ D  I      S  IT   S+  
Sbjct: 146 IETLVGVEESECRQVNQGFIHRITAKKPFGILKYAMTLDGKIAATSGHSTWITSPASRQI 205

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LR+  DAI+VG  TV  D+P LT   +GL  H+P+R+++     L   + +  T+  
Sbjct: 206 VHQLRSACDAIIVGGSTVRQDNPHLTT--HGLCNHNPLRVVMTRSLDLPPSAHLWDTSQF 263

Query: 243 APVIIVTENDDPV-LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            P ++ T+ D  V L      K + +I         ++  L  RG   +L E G  ++ +
Sbjct: 264 -PTLVYTQIDSNVKLKQQLLTKGVEVIELTEVTPTLVMENLYQRGFCQVLWECGGGLSAA 322

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC-------VRRDYFGSDVCLE 353
            I   +V  II + +  +I  GGI +P   G L    M        V  +Y   D+ +E
Sbjct: 323 AIAEGMVQKIIAFIAPKII--GGINAPTAVGDLGFQLMSQALQLENVTVNYLNPDILIE 379


>gi|255020757|ref|ZP_05292816.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Acidithiobacillus caldus ATCC 51756]
 gi|254969819|gb|EET27322.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Acidithiobacillus caldus ATCC 51756]
          Length = 369

 Score =  192 bits (488), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 130/367 (35%), Positives = 189/367 (51%), Gaps = 16/367 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL  +R  +  T  NP V  ++V+DG ++GRG     G  HAEV AL +AGE ARGA
Sbjct: 1   MAEALTLARRGLYSTHPNPRVGAVVVRDGQIVGRGAHLRAGDAHAEVFALAQAGERARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           T YVTLEPC H+GR+PPC   I+  G+ RVV+ + DP+ RV G G+  L Q+G+ V+   
Sbjct: 61  TLYVTLEPCCHHGRTPPCTDAILTAGVARVVIAIADPNPRVRGGGIALLQQQGLQVELGC 120

Query: 131 ESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            +E    L+  ++ R    R  I LK A S D  + +A   S  +TG  ++  V   RA 
Sbjct: 121 LAEEATALNIGFVRRMRSGRPWIRLKQAQSLDGCVALASGESQWLTGSAARADVQRERAA 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           + AI+VG+GTVLAD+P L  R++      P +IILD H +   D+ +  T     + I  
Sbjct: 181 ASAIVVGVGTVLADNPRLAPRVDFPLCRFPHKIILDSHLRTPADAALFDTP--GEIWIFH 238

Query: 250 END-DPV--LALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             D DP   + L  R  ++  +    +    DL  L T L  R    +LVE G  +A S 
Sbjct: 239 GQDADPERRIRLIQRGAHLQGLPMGPKGVGLDLAALWTALAQRECNEVLVEAGPELATSL 298

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYIGK- 357
           +    VD  +LY +  ++GEG  P+     Y +     ++   R +    DV L+ +   
Sbjct: 299 LRGGWVDEWLLYLAPKILGEGAQPAARLGPYAQLDAVPSWRLWRAETIAGDVKLQLLSAE 358

Query: 358 -NLCLQE 363
              CLQE
Sbjct: 359 GQSCLQE 365


>gi|77165491|ref|YP_344016.1| riboflavin biosynthesis protein RibD [Nitrosococcus oceani ATCC
           19707]
 gi|254433444|ref|ZP_05046952.1| riboflavin biosynthesis protein RibD [Nitrosococcus oceani AFC27]
 gi|76883805|gb|ABA58486.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Nitrosococcus
           oceani ATCC 19707]
 gi|207089777|gb|EDZ67048.1| riboflavin biosynthesis protein RibD [Nitrosococcus oceani AFC27]
          Length = 365

 Score =  192 bits (487), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 111/327 (33%), Positives = 180/327 (55%), Gaps = 14/327 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ ++  +  T  NP V C++V+ G ++G G     G  HAE+ AL +AG  A+G+
Sbjct: 1   MARALKLAQRGLFTTDPNPRVGCVLVRGGEIVGEGWHQQAGDSHAEINALRQAGIRAQGS 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
           T YVTLEPC H GR+PPC + +IE G+ RVV  + DP  +V+ +GL  L + G+ V+  +
Sbjct: 61  TCYVTLEPCCHRGRTPPCTEALIEAGVVRVVAAMGDPHPKVASQGLAQLREAGLQVEHGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           ++ E +     ++ R V+ R  +  K+A+S D    +A   S  IT   ++  V   RA+
Sbjct: 121 LQEEAQALNVGFVQRLVQGRPWVRCKLAMSLDGATALASGESRWITASPARRDVQRWRAR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEH-------SPMRIILDPHFKLSLDSKIIKTALL 242
           S AIL GIGTV+ DDP L  R   LQ+         P+R++LD    +   ++++  +L 
Sbjct: 181 SSAILTGIGTVVRDDPSLNVRYEELQDEVPPGFSRQPLRVVLDRRLAIMAQARLL--SLR 238

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298
            PV+IV  +     A + R + + +I         DL  L+ +L  R +  L VE GA +
Sbjct: 239 GPVMIVCADATSPKAESLRGRGVEVISLPVTPQGLDLMALMAVLAAREINELHVECGARL 298

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGI 325
           A S + + L+D ++LY +  ++GE  +
Sbjct: 299 AGSLLQAGLMDELVLYIAPKLMGEAAL 325


>gi|254975336|ref|ZP_05271808.1| riboflavin biosynthesis protein [Clostridium difficile QCD-66c26]
 gi|255092726|ref|ZP_05322204.1| riboflavin biosynthesis protein [Clostridium difficile CIP 107932]
 gi|255314465|ref|ZP_05356048.1| riboflavin biosynthesis protein [Clostridium difficile QCD-76w55]
 gi|255517142|ref|ZP_05384818.1| riboflavin biosynthesis protein [Clostridium difficile QCD-97b34]
 gi|255650247|ref|ZP_05397149.1| riboflavin biosynthesis protein [Clostridium difficile QCD-37x79]
 gi|260683365|ref|YP_003214650.1| riboflavin biosynthesis protein [Clostridium difficile CD196]
 gi|260686960|ref|YP_003218093.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Clostridium difficile R20291]
 gi|306520226|ref|ZP_07406573.1| riboflavin biosynthesis protein [Clostridium difficile QCD-32g58]
 gi|260209528|emb|CBA63111.1| riboflavin biosynthesis protein [Clostridium difficile CD196]
 gi|260212976|emb|CBE04276.1| riboflavin biosynthesis protein [Clostridium difficile R20291]
          Length = 367

 Score =  192 bits (487), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 114/326 (34%), Positives = 171/326 (52%), Gaps = 6/326 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++   G  + NP V C+IVKD  +IG+G     G  HAEV A+  A + 
Sbjct: 7   DIYYMKKAIELAKNGEGFVNPNPLVGCVIVKDSNIIGKGYHEKFGSNHAEVNAINSAKQS 66

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            + +T YV LEPCSHYG++PPC   II+  I+RVV+   DP+  V G G++ L    I V
Sbjct: 67  LKDSTLYVNLEPCSHYGKTPPCVDKIIQNKIKRVVISTLDPNPLVCGNGVKKLKDNNIDV 126

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E +    A+      KR    +K AVS D  I      S  I+   S+   H 
Sbjct: 127 TVGILEDEARDLNEAFFYHIKNKRPLCIVKSAVSLDGKIATKSLESKWISNESSRYLTHK 186

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R +  +I+VGI TVL D+P LTCRLN  +   P RI++D H KL L+S ++K    +  
Sbjct: 187 YRNKYQSIMVGINTVLNDNPLLTCRLNQEKVSHPTRIVIDTHLKLPLNSNLVKDK-TSKT 245

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           I+ T   + +     ++ N+  I    +    DL+ ++  L    + S+LVEGGA +  S
Sbjct: 246 IVFTCCKESIKLSMLKENNVETIISPSKNNLVDLEFVMYKLGELNIDSVLVEGGATLNDS 305

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS 327
              ++LVD + L+ S  +IG    P+
Sbjct: 306 LFRNKLVDKVKLFLSPKIIGGKDAPT 331


>gi|296101536|ref|YP_003611682.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295055995|gb|ADF60733.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 367

 Score =  192 bits (487), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 123/328 (37%), Positives = 183/328 (55%), Gaps = 16/328 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A++ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEMYMARAMKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPC + +I  G+ RVV  + DP+ +V+GRGL  L Q+GI V
Sbjct: 63  ARGATAYVTLEPCSHHGRTPPCCEALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQEGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M  + +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMQDAEAINKGFLKRMRTGFPYIQLKLGASLDGRTAMANGESQWITSPQARRDVQH 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP +T R N L         QE+   P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSETVLADDPAMTVRWNELNADTQALYPQENLRQPLRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVE 293
           +I++       I  T+ D      + R  +I +   +      +L +L+G+  V S+ VE
Sbjct: 243 RIVQQPGET-WIARTKEDSRDWPESVR--SIMVPEHNGHLDLVVLMMLLGKQQVNSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG 321
            G  +A + + + LVD +I+Y +  ++G
Sbjct: 300 AGPTLAGALLQAGLVDELIVYVAPKLLG 327


>gi|303231427|ref|ZP_07318158.1| riboflavin biosynthesis protein RibD [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513864|gb|EFL55875.1| riboflavin biosynthesis protein RibD [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 406

 Score =  192 bits (487), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 128/352 (36%), Positives = 183/352 (51%), Gaps = 38/352 (10%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++   G TS NP V  ++VK+  ++G G     G  HAEV AL+ AG  
Sbjct: 4   DELYMKRAISLAKMATGHTSPNPLVGAVVVKNNTIVGEGYHHKAGEAHAEVHALDAAGYN 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGAT YVTLEPC+HYG++PPCA+ ++E GI RVV+   DP+  V+G+G+Q L++ GI V
Sbjct: 64  ARGATLYVTLEPCAHYGKTPPCAKRVVESGIARVVIGSTDPNPLVAGKGIQILTEAGIEV 123

Query: 127 --DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
             D  ++   ++  H +   Q  K   +T+K A+S D  I      S  IT   S+   H
Sbjct: 124 TTDVCVDECIQLNEHFFTFIQTHK-PFVTIKSAMSLDGKIATFTGQSQWITNESSRKDGH 182

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL------------------NGLQEHSPMRIILDP 226
           +LRA  DA+LVGIGT+LADDP L CRL                  N L+ H P  IILD 
Sbjct: 183 VLRATHDAMLVGIGTILADDPLLNCRLTRDELYEALINRHDVSIDNTLEVHQPDIIILDS 242

Query: 227 HFKLSLDSKIIKTALLAPVIIVTEN--DDPVLALA-------------FRKKNINIIYCD 271
             +   D+K+        +I V +   +   +ALA              R+     +  D
Sbjct: 243 QGRTPTDAKVFTIPNRKVIIYVAKGCPEQRRIALANVGAIVKELPTKSVRQGRTTDVAID 302

Query: 272 CR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            +  D++  L  L  +  TS+LVEGG+ +  SF+ S   D I+ Y   +VIG
Sbjct: 303 IKKIDIQACLEHLGEQEYTSVLVEGGSTIISSFVESLAFDKIVTYIGNLVIG 354


>gi|320102303|ref|YP_004177894.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Isosphaera
           pallida ATCC 43644]
 gi|319749585|gb|ADV61345.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Isosphaera
           pallida ATCC 43644]
          Length = 387

 Score =  192 bits (487), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 125/325 (38%), Positives = 177/325 (54%), Gaps = 16/325 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--R 68
           M  AL  +    G    NP V  LIV+ G V+GRG     G PHAEV+AL    + A  R
Sbjct: 1   MRLALALAERGRGHVEPNPMVGALIVRGGEVVGRGWHRRFGGPHAEVEALRSLSDPALAR 60

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-D 127
           GAT +VTLEPC H G++PPC Q I+E GI RVV  + DP  +V+G GL  L   G+ V  
Sbjct: 61  GATLFVTLEPCCHVGKTPPCTQAILEAGITRVVAAMADPFPKVAGGGLAALRAAGVEVCH 120

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + E+  +    AYL + +  R ++T K A++ D     A   S  I+   S+ +VH LR
Sbjct: 121 GLEETAARRLNAAYLKQVLIGRPYVTAKWAMTLDGKTAAATGDSRWISNERSRARVHELR 180

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DAI+VGIGT LADDP LT R  G    +P RI+LD   +L L S++++T   AP+ +
Sbjct: 181 GRMDAIVVGIGTALADDPLLTVRPPG--PRTPTRIVLDSQARLPLSSRLVRTIDQAPLWL 238

Query: 248 VTENDDPVLAL-AFRKKNINIIYCDCRDLKK----------LLTILVGRGVTSLLVEGGA 296
           V   D P   L A  +  + +      D+++          LL  L   G+T LLVEGG 
Sbjct: 239 VHRPDAPADRLSALERAGVKLFAPQVEDMERHRTSGVPIVPLLDELGREGMTHLLVEGGG 298

Query: 297 AVAHSFINSRLVDSIILYRSQIVIG 321
            VA +F ++  +D++ ++ +  VIG
Sbjct: 299 RVAGAFFDAGAIDALEVFIAPRVIG 323


>gi|253996924|ref|YP_003048988.1| riboflavin biosynthesis protein RibD [Methylotenera mobilis JLW8]
 gi|253983603|gb|ACT48461.1| riboflavin biosynthesis protein RibD [Methylotenera mobilis JLW8]
          Length = 372

 Score =  192 bits (487), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 118/329 (35%), Positives = 181/329 (55%), Gaps = 8/329 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S+ D  +M+ ALR +   +  T  NP V C+IV+D  ++G+G     G PHAEV AL +
Sbjct: 4   LSTSDHTYMNLALRLAAQGLYTTQPNPRVGCVIVRDQQIVGQGAHHKAGEPHAEVFALRQ 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  A GA  YVTLEPCSH+GR+PPC Q +I    +RVV+ + DP+  V+GRG+  L  +
Sbjct: 64  AGALAEGADVYVTLEPCSHFGRTPPCVQAVIAAKPKRVVIAMQDPNPLVAGRGVTALRAQ 123

Query: 123 GIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ V   +  +  + L+  ++ R      ++  KIA S D    ++   S  ITG  ++ 
Sbjct: 124 GVEVVVGVLEQEAVALNVGFIARMTRGFPYVRSKIAASLDGRTALSNGKSQWITGEAARQ 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V   RAQS AIL GIGTVLAD+P +T R        P+R+I+D   +L L+S +++  +
Sbjct: 184 DVQHWRAQSCAILTGIGTVLADNPSMTVRFP-TATRQPLRVIVDSKLQLPLNSNMLEPTM 242

Query: 242 LA--PVII--VTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGG 295
           LA  PV++  V + +     LA     +  I    +  DL +LL +L  R V  +LVE G
Sbjct: 243 LAQSPVLVAYVVDTEQRAAVLAATGAELLCIPNQTQQVDLAQLLQVLAQRDVNEVLVEAG 302

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGG 324
             +    +++ L+D  I Y +  ++G   
Sbjct: 303 QGLNGGLLHAGLIDEFIFYYAPKLMGSAA 331


>gi|197283994|ref|YP_002149866.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Proteus mirabilis HI4320]
 gi|194681481|emb|CAR40325.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Proteus mirabilis HI4320]
          Length = 385

 Score =  192 bits (487), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 125/334 (37%), Positives = 174/334 (52%), Gaps = 26/334 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  +      TS NP+V C+IVK+G +IG G   + G PHAEV AL  AGE 
Sbjct: 18  DETYMRRAIELAALGRFTTSPNPNVGCVIVKEGKIIGEGYHHHAGGPHAEVNALNMAGEN 77

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YVTLEPCSH+G++PPCA  +I  G++RVV  + DP+ +V+GRGL  L   GI V
Sbjct: 78  AKGATVYVTLEPCSHFGKTPPCADALINAGVKRVVAAMQDPNPQVAGRGLHKLVAAGIDV 137

Query: 127 DR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
               +M+   K+ +  +  R      +I LK+A S D    +A   S  IT   S+  V 
Sbjct: 138 SHGVLMQEAEKLNI-GFFKRMRTGFPYIQLKLAASLDGKTALASGESQWITSNASRQDVQ 196

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLSLD 233
             RAQ+ AIL    TVLADDP +  R   L +             P+RII D   +++ D
Sbjct: 197 NFRAQASAILTTSATVLADDPAMNVRWEALSDEIKAIYPLESLRQPIRIITDSQNRVTPD 256

Query: 234 SKIIKTA---LLAPVIIVTE---NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
            KI + A   LLA      E    D   + L    KN ++      DL  L+  L  R +
Sbjct: 257 YKITQLAGECLLARTHSQQEAWQGDVSEILLPTNGKNSSV------DLVLLMMQLGKRNI 310

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            S+ VE GA  A + +   LVD +I+Y +  ++G
Sbjct: 311 NSVWVESGAHFAGALLELGLVDELIIYIAPKILG 344


>gi|269138330|ref|YP_003295030.1| riboflavin biosynthesis protein RibD [Edwardsiella tarda EIB202]
 gi|267983990|gb|ACY83819.1| riboflavin biosynthesis protein RibD [Edwardsiella tarda EIB202]
 gi|304558362|gb|ADM41026.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Edwardsiella tarda FL6-60]
          Length = 373

 Score =  192 bits (487), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 126/340 (37%), Positives = 178/340 (52%), Gaps = 22/340 (6%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  +  D  +M+ A   +R     T+ NP+V C++V+D  ++G G     G PHAEV AL
Sbjct: 3   MSAAHSDEFYMARAFELARRGRFTTTPNPNVGCVLVRDDRIVGEGFHLRAGEPHAEVHAL 62

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L 
Sbjct: 63  RMAGELARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPHVAGRGLYRLQ 122

Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           Q GI V   +M +E +     +L R      ++ LK+  S D    MA   S  IT   +
Sbjct: 123 QAGISVRHGVMLAEAEAINKGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSAAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHF 228
           +  V   RAQS AIL    TVLADDP LT R   L         QEH   P+R+I+D H 
Sbjct: 183 RADVQRYRAQSSAILSSSATVLADDPALTVRWASLDEATQRLYPQEHLRQPLRVIVDSHN 242

Query: 229 KLSLDSKIIKT---ALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
           +++   ++I      LLA V   T+     V  LA  +    +      DL  L+  L  
Sbjct: 243 RVTPQHRLITQPGETLLARVDPDTQAWPSSVSQLAVPRHGEGL------DLVLLMMQLGK 296

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
             + S+ VE G  +A + + + LVD +I+Y +  ++G+  
Sbjct: 297 MQLNSVWVEAGPRLAGALLQAGLVDELIVYLAPTLLGDAA 336


>gi|320108304|ref|YP_004183894.1| riboflavin biosynthesis protein RibD [Terriglobus saanensis SP1PR4]
 gi|319926825|gb|ADV83900.1| riboflavin biosynthesis protein RibD [Terriglobus saanensis SP1PR4]
          Length = 397

 Score =  192 bits (487), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 128/376 (34%), Positives = 202/376 (53%), Gaps = 31/376 (8%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           +  D R M  AL  +R   GL S NP V C++     ++G+G   Y    HAE+ AL++A
Sbjct: 6   TEIDRRHMEQALTLARATSGLASPNPQVGCVLAHGEEIVGQGAHRYVARDHAEIVALKQA 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
             +A+GATAYVTLEPCSH+GR+ PCA  +IE G+ RVV    DP+ +VSG G+  + Q G
Sbjct: 66  DGKAKGATAYVTLEPCSHHGRTGPCANALIEAGVARVVAATLDPNPKVSGSGMARIEQAG 125

Query: 124 IIVDR-MMESEGK----IFLHAYLTRQVEKRSHITLKIAVSQDNMIG---MAGCGSVP-- 173
           I+    ++E + +     F H  LTRQ      +TLK A+S D  +        G+ P  
Sbjct: 126 IVAQHGLLEEQARAMNDAFAHYILTRQ----PLVTLKSALSVDGKLAPLPANRIGNSPFW 181

Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233
           +TG  ++ +VH LR  +DAIL G+GT++ADDP LT R N  +     RI+LD H +L L 
Sbjct: 182 LTGTAAREEVHRLRHSNDAILTGVGTLIADDPLLTDRSNLPRRRPLQRIVLDTHLRLPLT 241

Query: 234 SKIIKTALLAPVIIVT-----ENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVG 284
           ++I+ T     +I+ +     E    +  L  R ++++ I         D+   L +L  
Sbjct: 242 ARILDTINDDLIILCSARAPDETQKHLRTLGVRVEHVSEILTKRGTHELDIPGTLKLLGT 301

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP------SPLE-EGYLEKN 337
             + S+L+E G ++  +F+++ +VD  +L+ ++  +G   +P      SP     +L+K 
Sbjct: 302 FDLLSVLLEAGPSLNTAFLDADMVDKAVLFFAETELGNDALPFAYGNHSPFRLVEHLQKV 361

Query: 338 FMCVRRDYFGS-DVCL 352
             C  ++  GS D C+
Sbjct: 362 ARCDFQNESGSLDACI 377


>gi|323144123|ref|ZP_08078762.1| riboflavin biosynthesis protein RibD [Succinatimonas hippei YIT
           12066]
 gi|322416100|gb|EFY06795.1| riboflavin biosynthesis protein RibD [Succinatimonas hippei YIT
           12066]
          Length = 366

 Score =  192 bits (487), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 114/328 (34%), Positives = 180/328 (54%), Gaps = 19/328 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL+ +      TS NP+V C+IV++G++IG G     G PHAE+ A+  AG    GA
Sbjct: 1   MKRALKLAARGKFTTSPNPAVGCVIVRNGMIIGEGYHHKAGEPHAEIMAMRSAGSSVAGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129
           T YVTLEPCSHYGR+PPCA+ +++ G++RVV+   DP+ +V+GRG++ L   GI VD  +
Sbjct: 61  TCYVTLEPCSHYGRTPPCAKALVKAGVKRVVIACGDPNPQVAGRGVKILKDAGIEVDVGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            E++      A+    V+   ++T+KI +S D  I ++   S  IT   S+  V  +RA 
Sbjct: 121 YENKALKLNRAFFKSIVKNIPYVTVKIGMSLDAKIALSDGRSKWITSEKSRQTVQKMRAA 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLSLDSKIIK 238
           SDAI+ G GTV+AD+P L  R + L           +E  P+R++LD   +++ D  ++ 
Sbjct: 181 SDAIITGSGTVIADNPLLNVRYDELSAKVFEKYDINKEKQPLRVVLDSRQRINPDDYVMF 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVE 293
           +     V++V  + D         +++ I Y  C       +  +L+ L  R    +LVE
Sbjct: 241 SQ--GKVLLVRPSLDSKNISEQINEHLEIFYAPCDFAGRICISAVLSELSKRQCRKVLVE 298

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG 321
            G  +  SF+  RL D + L+ +  V+G
Sbjct: 299 AGPTLVASFLQERLADELALFVAPKVLG 326


>gi|28199619|ref|NP_779933.1| riboflavin-specific deaminase [Xylella fastidiosa Temecula1]
 gi|182682363|ref|YP_001830523.1| riboflavin biosynthesis protein RibD [Xylella fastidiosa M23]
 gi|28057734|gb|AAO29582.1| riboflavin-specific deaminase [Xylella fastidiosa Temecula1]
 gi|182632473|gb|ACB93249.1| riboflavin biosynthesis protein RibD [Xylella fastidiosa M23]
 gi|307578645|gb|ADN62614.1| riboflavin biosynthesis protein RibD [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 364

 Score =  192 bits (487), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 123/332 (37%), Positives = 184/332 (55%), Gaps = 17/332 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D R M  AL  +      T  NP V C+IV+DG V+G G     G PHAEV AL  A
Sbjct: 5   SADDHRHMERALCLAERGAYTTRPNPMVGCVIVRDGEVVGEGWHQRAGDPHAEVFALCAA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G+ ARGATAYVTLEPC+H GR+PPCA  +I+ G+RRVV  + DP   V+G G+  L   G
Sbjct: 65  GDRARGATAYVTLEPCAHSGRTPPCAMALIDAGVRRVVAAMVDPFPLVNGGGVTLLRAAG 124

Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + V+  +ME++ +     +L+R    R  + +K+  S D    +A   S  ITG  ++  
Sbjct: 125 VTVEHGLMEAQARALNRGFLSRVERGRPWVRIKLGSSLDGRTALASGESKWITGEAARAD 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKTA 240
           V   RA++ AIL G GTVLADDP LT RL G +     P+R++LD   + SL    ++  
Sbjct: 185 VQRWRARASAILTGAGTVLADDPALTVRLGGEEGAFLPPLRVVLDSSLR-SLSCVKVRDG 243

Query: 241 LLAPVIIVTEN--DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294
             AP + +       PVL      ++++      R    DL+ +L +L  RG+  + VE 
Sbjct: 244 -TAPTLYLHGFGVTSPVL------QHVDFSEVQQRDAGLDLEAVLRLLGERGINEVQVEA 296

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           GA +  + +++ LVD +++Y + +++G+   P
Sbjct: 297 GATLCGALLHAGLVDELLIYIAPLLLGDTARP 328


>gi|258645658|ref|ZP_05733127.1| riboflavin biosynthesis protein RibD [Dialister invisus DSM 15470]
 gi|260403024|gb|EEW96571.1| riboflavin biosynthesis protein RibD [Dialister invisus DSM 15470]
          Length = 434

 Score =  192 bits (487), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 119/326 (36%), Positives = 178/326 (54%), Gaps = 9/326 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D +FM+ AL  +   +G T  NP V  ++VKDG +IG G   + G PHAEV A  +   +
Sbjct: 6   DKKFMARALELAANGMGHTRPNPMVGAVLVKDGEIIGEGWHEFYGGPHAEVNAFADCRAD 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GAT YVTLEPC HYG++PPCA  I+   + RVVV + DP+  VSG+G++ L   GI V
Sbjct: 66  PAGATLYVTLEPCCHYGKTPPCADLIVSKNLERVVVAMQDPNPLVSGKGIRKLKDAGIFV 125

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +ME E ++    ++    EK+  +  K AVS D         S  I+   S+ +V  
Sbjct: 126 TTGVMEKEAQVLNEVFMKFITEKKPFVLYKSAVSMDGKTACHTGKSQWISSEESREEVRT 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    A++ G GT+ ADDP LT R  GL++  P+RII+D    +S++S++        +
Sbjct: 186 LRGLYAAVMAGAGTIAADDPLLTARTEGLED--PVRIIVDGKLSVSMESRVFGGESRV-I 242

Query: 246 IIVTENDDPVLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
           ++ T +       AF+ K I +I+ D     C DL+  +  L  +G+ S+L+EGGA  A 
Sbjct: 243 VLTTSSAASEKVKAFQSKGIEVIFADSDTEGCVDLEAAMIGLAVKGIDSILLEGGAETAA 302

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIP 326
           +   + +VD I  Y + I+IG    P
Sbjct: 303 AAFEAGIVDKIRFYMAPILIGGKDAP 328


>gi|17227578|ref|NP_484126.1| riboflavin biosynthesis protein [Nostoc sp. PCC 7120]
 gi|17135060|dbj|BAB77606.1| riboflavin biosynthesis protein [Nostoc sp. PCC 7120]
          Length = 396

 Score =  192 bits (487), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 125/359 (34%), Positives = 190/359 (52%), Gaps = 14/359 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           + FD R M   L  +R  +G TS NP V  ++VKDG ++G G     G PHAEV AL  A
Sbjct: 35  NDFDVRMMQRCLELARRALGRTSPNPLVGAVVVKDGEIVGEGFHPRAGEPHAEVFALRAA 94

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGAT YV LEPC+HYGR+PPC++ +I  G+ +VVV + DP+  V G G+  L   G
Sbjct: 95  GELARGATVYVNLEPCNHYGRTPPCSEALIAAGVAKVVVGMVDPNPLVGGGGIARLRGAG 154

Query: 124 IIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + V   +E    +     ++ R V K+    LK A++ D  I      S  +T   ++ +
Sbjct: 155 VEVLVGVEMAACQQLNEGFVHRIVHKKPLGILKYAMTLDGKIATTSGHSAWVTNPSARGE 214

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LRA  DA++VG  TV  D+P LT    G+  H+P+R+++     L LD+ + +T + 
Sbjct: 215 VHQLRAACDAVIVGGNTVRRDNPYLTSHQEGV--HNPLRVVMSRQMDLPLDAHLWET-VE 271

Query: 243 APVIIVTE-NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           AP +++T+   +P      ++K + I+       + +++ L  RG  S+L E G  +A S
Sbjct: 272 APTLVLTQVGANPDFQKLLQQKGVEIVELASLTPETVMSYLYDRGFCSVLWECGGTLAAS 331

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC-------VRRDYFGSDVCLE 353
            I    V  I+ + +  +IG    P+P+  G L  + M        VR    GSD  +E
Sbjct: 332 AIAQGAVQKILAFIAPKIIGGSHAPTPV--GDLGFDTMTEALILERVRWRVVGSDCLVE 388


>gi|254474397|ref|ZP_05087783.1| riboflavin biosynthesis protein RibD [Ruegeria sp. R11]
 gi|214028640|gb|EEB69475.1| riboflavin biosynthesis protein RibD [Ruegeria sp. R11]
          Length = 358

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 125/315 (39%), Positives = 178/315 (56%), Gaps = 7/315 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           MS AL   R   G    NP+V C+IVKDG ++GRG T  GG PHAE +AL  AG  ARGA
Sbjct: 1   MSLALSLGRRGQGQCWPNPAVGCVIVKDGRIVGRGWTQPGGRPHAEPEALARAGALARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           TAYV+LEPC+H+G++PPCAQ +I+ G++RVV  ++D D RVSG G   L   GI V   +
Sbjct: 61  TAYVSLEPCAHFGKTPPCAQALIDAGVKRVVAAIEDSDPRVSGHGFAMLRDAGIEVTTGI 120

Query: 131 ESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            ++     HA +  +  + R  +TLK+A S D  I  A   S  ITG  ++  VH +RA+
Sbjct: 121 CADEAARDHAGFFLKTEQGRPFVTLKLANSFDGRIATATGESKWITGPDARRAVHAMRAR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV- 248
            DA++VG GT  ADDP LT R  G+    P+R+++  H  L L  ++ +TA   P+ I  
Sbjct: 181 HDAVMVGGGTARADDPSLTVRDMGISRQ-PVRVVISRHLDLPLMGQLARTAKDVPLWICH 239

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHSFIN 304
               D     A+      +I+C    L+     +L  L   G+T +  EGG+ +A S + 
Sbjct: 240 GSGADADRLRAWEGVGATLIHCASDGLQLEAADVLQQLGQAGLTRVFCEGGSGLAASLLK 299

Query: 305 SRLVDSIILYRSQIV 319
             LVD +I + + +V
Sbjct: 300 QDLVDELIGFTAGVV 314


>gi|34496745|ref|NP_900960.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Chromobacterium violaceum ATCC 12472]
 gi|34102600|gb|AAQ58965.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Chromobacterium violaceum ATCC 12472]
          Length = 368

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 125/328 (38%), Positives = 178/328 (54%), Gaps = 14/328 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE- 62
           S+ D  +M  ALR +       + NP V C++V  G V+G G T   G  HAEVQA+++ 
Sbjct: 5   SADDYLYMQRALRLAEGATRRAAPNPGVGCVLVNHGRVVGEGATLALGSDHAEVQAIKDC 64

Query: 63  --AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              GE  RGATAYVTLEPCSH+GR+PPCA+ +++ G+ RVV  + DP   VSGRG+  L 
Sbjct: 65  LARGESPRGATAYVTLEPCSHHGRTPPCAERLVKEGVARVVAAMVDPYHEVSGRGIAMLR 124

Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             G+     +ME++ +     +L+R    R  +TLK A + D    +    S  ITG  +
Sbjct: 125 AAGVEASAGLMEAQARRAHRGFLSRVERGRPWVTLKAAATLDGKTALLNGRSKWITGPEA 184

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-PMRIILDPHFKLSLDSKIIK 238
           +  V  LRA   AIL G GTVLADDP+LT R   LQ  S P R++LD   +    +++ +
Sbjct: 185 RMDVQRLRAAHCAILTGSGTVLADDPQLTVRE--LQVASQPWRVVLDGDLRTDPAARVYQ 242

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEG 294
                  +     D   LA AFR + + ++         DL  LL  L GRGV  L+VE 
Sbjct: 243 GG--GAWLASCAADAGRLA-AFRGRGVEVLTLARLGGKADLADLLAQLAGRGVNELMVEA 299

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGE 322
           GA +  + + + LVD I+LY +  + G+
Sbjct: 300 GAGLNGAMLRAGLVDEIVLYLAPSLAGD 327


>gi|326791794|ref|YP_004309615.1| riboflavin biosynthesis protein RibD [Clostridium lentocellum DSM
           5427]
 gi|326542558|gb|ADZ84417.1| riboflavin biosynthesis protein RibD [Clostridium lentocellum DSM
           5427]
          Length = 363

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 132/364 (36%), Positives = 199/364 (54%), Gaps = 31/364 (8%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL  ++   G  S NP V  ++VK+G +IG G     G  HAEV A++ A +++ G
Sbjct: 5   YMRYALNLAKQGGGKVSPNPLVGAVLVKEGRIIGEGYHEVYGANHAEVNAIKSASQKSEG 64

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           AT YVTLEPC+HYG++PPC + II+  I RVVV + DP+  V+G G++ L   GI ++  
Sbjct: 65  ATLYVTLEPCNHYGKTPPCTETIIQNKIMRVVVGMRDPNPLVAGSGIKRLEDAGIEVIVG 124

Query: 129 MMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           ++E E     +IF+  Y+T+Q      + LK A++ D  I      S  ITG  S+  VH
Sbjct: 125 ILEEECRKLNEIFIK-YITKQ---EPFVLLKAAMTLDGKIATVAGQSKWITGEASREMVH 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR     ILVGIGTV+ DDP LTCRL  +   +P+ I++D   ++ + SKII     + 
Sbjct: 181 QLRNAYSGILVGIGTVIKDDPLLTCRL--VSGRNPVIIVVDSTLRIPMSSKIIGGT--SK 236

Query: 245 VIIVTENDDPVLALAFRKK----NINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
           VII    +   +A+   KK     + +++ +      +LK+L+  L   G+ S+L+EGGA
Sbjct: 237 VIIAAVKEIEEMAVDKVKKLEELGVKVLFIEAYKHRVNLKELMIQLGKLGIDSILIEGGA 296

Query: 297 AVAHSFINSRLVDSIILYRS-QIVIGEGGIP------SPLEEGYLEKNFMCVRRDYFGSD 349
            V  S + + +VD +  Y + QIV G+   P      + LEE    +N    R    G D
Sbjct: 297 EVNASALEAGIVDKVQFYIAPQIVGGQAKTPVAGRGIADLEESIKVENLQIKR---IGED 353

Query: 350 VCLE 353
           + LE
Sbjct: 354 ILLE 357


>gi|254236945|ref|ZP_04930268.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
           C3719]
 gi|126168876|gb|EAZ54387.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
           C3719]
          Length = 373

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/346 (35%), Positives = 179/346 (51%), Gaps = 33/346 (9%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ D  +M+ AL  +R  +  T  NP V C++VKDG V+G G     G PHAEV AL +
Sbjct: 1   MNAADPLYMARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q 
Sbjct: 61  AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V   ++E+E +     ++ R       + +K+A+S D    MA   S  ITG  +++
Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARS 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPEL--TCRLNG--------LQEHSPMRIILDPHFKLS 231
            V  LRA+S  +L    T+LADD  L  T R  G             P+R+++D   ++ 
Sbjct: 181 AVQRLRARSSVVLSRADTLLADDARLKRTARRTGPNAELTALAAARQPLRVLVDGRLRVP 240

Query: 232 LDSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
           L+S   +     P ++ T           +    +LAL   + ++        DL KLL 
Sbjct: 241 LESAFYQA---GPALVATCAAASARERFQDAGHELLALPSAEGHV--------DLHKLLL 289

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            L  RG   +LVE G  +A +F    LVD   L+ +   +G    P
Sbjct: 290 ELAARGANEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARP 335


>gi|322434629|ref|YP_004216841.1| riboflavin biosynthesis protein RibD [Acidobacterium sp. MP5ACTX9]
 gi|321162356|gb|ADW68061.1| riboflavin biosynthesis protein RibD [Acidobacterium sp. MP5ACTX9]
          Length = 373

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 133/370 (35%), Positives = 192/370 (51%), Gaps = 17/370 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
           S D +FM  AL  +     L S NP V C+ V+DG +I  G   Y    HAE+ AL++A 
Sbjct: 2   SQDQQFMQRALELAESTTALASPNPQVGCVFVRDGKIIAEGFHLYEARDHAEIAALKQAE 61

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
             G +  G TAYVTLEPCSH+GR+ PCA  +I  GI R V+   D +  V G G+  L  
Sbjct: 62  ANGIDVAGDTAYVTLEPCSHHGRTGPCADVLIAAGISRCVIATLDANPVVRGNGVAKLEA 121

Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP-----IT 175
            GI V   ++E + +    A+          +TLK A+S D  +              +T
Sbjct: 122 AGIAVTVGVLEQKARTLNDAFAWSIRHNLPMVTLKAALSVDGKLAPPPSQRQRPEPHWLT 181

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM-RIILDPHFKLSLDS 234
           G  S+ +V  LR  SDAIL GIGTVLADDP LT R  GL    P+ RIILD H ++ + S
Sbjct: 182 GPESRAEVQRLRHASDAILTGIGTVLADDPTLTDR-TGLPRRRPLQRIILDAHLRIPVAS 240

Query: 235 KIIKTALLAPVIIVTEN--DDPVLALAFRKKNINIIY-CDCRDLKKLLTILVGRGVTSLL 291
           K++++A    +I   +N   D + AL      I+ +   D  DL+ +L+ L  R + S+L
Sbjct: 241 KLVESAADDLLIFCNQNAPQDRLTALEAAGAEIHQVPGTDRLDLRAILSTLHERKLLSVL 300

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE---EGYLEKNFMCVRRDYFGS 348
           +E G ++  +F+ + LV   IL+ +   +GEG +P   +      LE+    V R  FG 
Sbjct: 301 LEAGPSLNGAFLAAHLVQRAILFYADTELGEGALPFAEDLTNPHLLEQTMTHVTRTTFGP 360

Query: 349 DVCLEYIGKN 358
           D C+  + +N
Sbjct: 361 DGCVSGLLQN 370


>gi|118445111|ref|YP_879181.1| riboflavin biosynthesis protein RibD [Clostridium novyi NT]
 gi|118135567|gb|ABK62611.1| riboflavin biosynthesis protein RibD [Clostridium novyi NT]
          Length = 377

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 132/369 (35%), Positives = 195/369 (52%), Gaps = 14/369 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +FM  A+  S+  VG T  NP V  +IVKD  +IG+G     G  HAEV AL+ A E+  
Sbjct: 9   KFMKKAIELSKLGVGYTYPNPLVGAVIVKDNKIIGQGYHERFGGAHAEVNALKNATEDVT 68

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GAT YVTLEPCSHYG++PPCA  I++ GI+ V+V + DP+  V+GRG+  L + GI ++ 
Sbjct: 69  GATMYVTLEPCSHYGKTPPCANTIVKSGIKEVIVGMRDPNELVAGRGINILKENGIKVIV 128

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + E E K     ++     K     LK A++ D  I      S  I+  +S+  VH +R
Sbjct: 129 GVFEEEIKKINEIFIKYITTKEPFCILKTAMTLDGKIATVMGDSKWISNELSREYVHEIR 188

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            +   I+VGIGTVL DDP LT RL         RII+D   ++ L+SK++        II
Sbjct: 189 HRVAGIMVGIGTVLKDDPSLTTRLKEKTGRDATRIIVDSKGRIPLNSKVLNLDSKEKTII 248

Query: 248 VTEN-DDPVLALAFRKKNINIIYCDCRDLK---KLLTILVGR-GVTSLLVEGGAAVAHSF 302
            T    D +     +KK   +I    ++ K   K L I +G+  + S+L+EGG  + +S 
Sbjct: 249 ATTKLADKLKIEEIKKKGAEVIITPIKNGKVDLKFLVIELGKMNIDSILLEGGGTLNYSA 308

Query: 303 INSRLVDSIILYRS-QIVIGEGGIPSPLEEGYLEKNFMCVRRDY----FGSDVCLE-YIG 356
           +N  +VD +I + + +I+ G+    S   EG  + +      D     F  DV +E Y+ 
Sbjct: 309 LNEGIVDKVISFIAPKIIGGQDAKTSVAGEGIKKISDAVTLHDIEISNFQEDVVIEGYVK 368

Query: 357 K--NLCLQE 363
           K   +C QE
Sbjct: 369 KENKVCSQE 377


>gi|270308361|ref|YP_003330419.1| riboflavin biosynthesis protein,
           5-amino-6-(5-phosphoribosylamino)uracil reductase,
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Dehalococcoides sp. VS]
 gi|270154253|gb|ACZ62091.1| riboflavin biosynthesis protein,
           5-amino-6-(5-phosphoribosylamino)uracil reductase,
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Dehalococcoides sp. VS]
          Length = 365

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/322 (37%), Positives = 173/322 (53%), Gaps = 10/322 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           ++MS AL  ++  +G  S NPSV  +IVK+G V+G+G T   G  HAE+ AL++A E+A+
Sbjct: 2   KYMSQALSLAKLAIGQVSPNPSVGAVIVKNGEVVGQGFTQPPGGDHAEIVALKQAAEKAK 61

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127
           GA  YVTLEPC H GR+PPC   IIE GI+ V +   D +  VSG+G + L   GI V  
Sbjct: 62  GAALYVTLEPCCHQGRTPPCTGSIIESGIKEVYIATLDDNPLVSGKGKKELENAGIKVHL 121

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            MME E +    AY          +T K A+S D   G     S  I+   S++  H +R
Sbjct: 122 GMMEREARQMNEAYFKHITTGMPFVTAKYAMSLDGKTGTRTGDSKWISNEESRHFAHYIR 181

Query: 188 AQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
             SD I+ G+ T+L DDP LT R+N    G     P R+I+D + +  L S +       
Sbjct: 182 HISDVIMAGLNTILKDDPHLTARVNCGRGGTSHSQPTRVIIDDNGRAPLSSNVFHVP-GN 240

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYC-DCR---DLKKLLTILVGRGVTSLLVEGGAAVA 299
            ++ V +        A+ +    ++   D R   DLK LL  L   GVTS+LVEGG  V 
Sbjct: 241 TIVAVAKGLTLEEKQAYDEVGAKVVELPDERGLVDLKALLRYLGQNGVTSVLVEGGGIVL 300

Query: 300 HSFINSRLVDSIILYRSQIVIG 321
            S  + +LVD ++++ + I+IG
Sbjct: 301 GSLFDLKLVDKVLVFVAPIIIG 322


>gi|313898762|ref|ZP_07832296.1| riboflavin biosynthesis protein RibD [Clostridium sp. HGF2]
 gi|319935115|ref|ZP_08009555.1| riboflavin biosynthesis protein RibD [Coprobacillus sp. 29_1]
 gi|312956344|gb|EFR37978.1| riboflavin biosynthesis protein RibD [Clostridium sp. HGF2]
 gi|319809940|gb|EFW06323.1| riboflavin biosynthesis protein RibD [Coprobacillus sp. 29_1]
          Length = 366

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 135/372 (36%), Positives = 199/372 (53%), Gaps = 23/372 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A++ ++   G  + NP V  +IVKD  +IG+G     G  HAE  AL+   E 
Sbjct: 3   DTEYMKLAIKLAKKGAGYVNPNPMVGAVIVKDNRIIGQGYHEIFGGLHAERNALKNCRES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GAT YVTLEPC HYG++PPC + II+ GI RVVV   D +  VSG+G++ L +  I +
Sbjct: 63  PVGATLYVTLEPCCHYGKTPPCTEAIIKSGITRVVVGTLDCNPIVSGKGVKVLEENNIQV 122

Query: 126 VDRMMESEG----KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           V  ++E E     K+F   Y+TR +    ++ +K A++ D  I      S  I+G  ++ 
Sbjct: 123 VIGILEMECQQLIKVF-RKYVTRHI---PYVFMKYAMTMDGKIATYTNQSKWISGEKARK 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
           QVH  R +  AI+VG+ TV+ DDP LTCRL NG    +P+RI+ D   +  + SKIIKTA
Sbjct: 179 QVHQFRHKVTAIMVGVNTVIQDDPLLTCRLENG---ENPIRIVCDTDLRTPITSKIIKTA 235

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
                 I T + D      +RK    IIY   +    DL  L+  L    + SLL+EGG+
Sbjct: 236 NDIKTYIATSSIDESKIALYRKCGCEIIYTKKKGNHIDLMNLMQCLGNMQIDSLLLEGGS 295

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGYLEKNFMCVRRDYFGSDVCLEYI 355
           A+  S +  ++VD + +Y +  + G G   SP+  +G    N   + + Y  S V  +Y 
Sbjct: 296 AMNWSALEQQIVDEVQIYIAPKIFG-GSAKSPVSGQGVAFPNDAIMLKPYAFSQVGNDYF 354

Query: 356 GKNL----CLQE 363
            ++     CLQE
Sbjct: 355 IESEVIYPCLQE 366


>gi|307245212|ref|ZP_07527303.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254158|ref|ZP_07536003.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258621|ref|ZP_07540356.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306853856|gb|EFM86070.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862858|gb|EFM94807.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867278|gb|EFM99131.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 361

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/362 (33%), Positives = 196/362 (54%), Gaps = 20/362 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++  +G T+ NP V C+IVK+G ++  G     G  HAE  A+    E+
Sbjct: 3   DLDYMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAILHCKED 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GATAYVTLEPC H+GR+PPC+  +IE GI++V +   DP+  V+GRG   L Q G+ +
Sbjct: 63  LFGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGAGQLRQAGVEV 122

Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           V+ +++ E      IF H   T    KR ++ +K A++ D  I  +   S  ITG +++ 
Sbjct: 123 VEGLLKEECDALNPIFFHYIQT----KRPYVLMKYAMTADGKIATSTGESKWITGELARA 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +V   R Q  AI+VG+ TVLAD+P L  R+   ++  P+RI+ D   +  LD ++++TA 
Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQ--PVRIVCDSQLRTPLDCQLVQTAK 236

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
               +I T  DD      FR   + ++ C  R    DL+ LL  L    + SLL+EGG++
Sbjct: 237 EYRTVIATVCDDLQKVEQFRPLGVEVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352
           +  S + S +V+ +  Y +  ++G     +P+    +++    V+      +  G D+ L
Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356

Query: 353 EY 354
           +Y
Sbjct: 357 DY 358


>gi|15837552|ref|NP_298240.1| riboflavin-specific deaminase [Xylella fastidiosa 9a5c]
 gi|9105878|gb|AAF83760.1|AE003934_2 riboflavin-specific deaminase [Xylella fastidiosa 9a5c]
          Length = 364

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/329 (37%), Positives = 182/329 (55%), Gaps = 17/329 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D R M  AL  +      T  NP V C+IV+DG V+G G     G PHAEV AL  AG+ 
Sbjct: 8   DYRHMERALCLAERGAYTTRPNPMVGCVIVRDGEVVGEGWHQRAGDPHAEVFALCAAGDR 67

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPC+H GR+PPCA  +I+ G+RRVV  + DP   V+G G+  L   G+ V
Sbjct: 68  ARGATAYVTLEPCAHLGRTPPCAMALIDAGVRRVVAAMVDPFPLVNGGGVTLLRAAGVTV 127

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  +ME++ +     +L+R    R  + +K+  S D    +A   S  ITG  ++  V  
Sbjct: 128 EHGLMEAQARALNRGFLSRVERGRPWVRIKLGSSLDGRTALASGESKWITGEAARADVQR 187

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKTALLA 243
            RA++ AIL G GTVLADDP LT RL G +     P+R++LD   + SL    ++    A
Sbjct: 188 WRARASAILTGAGTVLADDPALTVRLGGEEGAFLPPLRVVLDSRLR-SLSCVKVRDG-TA 245

Query: 244 PVIIVTEN--DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
           P + +       PVL      ++++      R    DL+ +L +L  RG+  + VE GA 
Sbjct: 246 PTLYLHGFGVTSPVL------QHVDFSEVQQRDAGLDLEAVLRLLGERGINEVQVEAGAT 299

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           +  + +++ LVD +++Y + +++G+   P
Sbjct: 300 LCGALLHAGLVDELLIYIAPLLLGDTARP 328


>gi|165975842|ref|YP_001651435.1| riboflavin-specific deaminase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165875943|gb|ABY68991.1| riboflavin-specific deaminase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 364

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/363 (33%), Positives = 196/363 (53%), Gaps = 20/363 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++  +G T+ NP V C+IVK+G ++  G     G  HAE  A+    E+
Sbjct: 3   DLDYMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLHCKED 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GATAYVTLEPC H+GR+PPC+  +IE GI++V +   DP+  V+GRG   L Q G+ +
Sbjct: 63  LFGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGAGQLRQAGVEV 122

Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           V+ +++ E      IF H   T    KR ++ +K A++ D  I      S  ITG +++ 
Sbjct: 123 VEGLLKEECDALNPIFFHYIQT----KRPYVLMKYAMTADGKIATGTGESKWITGELARA 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +V   R Q  AI+VG+ TVLAD+P L  R+   ++  P+RI+ D   +  LD ++++TA 
Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQ--PVRIVCDSQLRTPLDCQLVQTAK 236

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
               +I T  DD      FR   + ++ C  R    DL+ LL  L    + SLL+EGG++
Sbjct: 237 EYRTVIATVCDDLQKVEQFRPLGVEVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352
           +  S + S +V+ +  Y +  ++G     +P+    +++    V+      +  G D+ L
Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356

Query: 353 EYI 355
           +Y+
Sbjct: 357 DYV 359


>gi|226939661|ref|YP_002794734.1| RibD [Laribacter hongkongensis HLHK9]
 gi|226714587|gb|ACO73725.1| RibD [Laribacter hongkongensis HLHK9]
          Length = 383

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/340 (35%), Positives = 178/340 (52%), Gaps = 24/340 (7%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D R+M+ AL+ +R  +  T+ NP V C++V DG V G G     G PHAE  AL  A
Sbjct: 3   SADDHRYMARALQLARLGMTSTAPNPRVGCVVVSDGQVAGEGWHVRAGTPHAERHALAMA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPCSH+GR+PPCA  +++ G+ RVV  + DP+  V+G+G+  L+  G
Sbjct: 63  GERARGATAYVTLEPCSHFGRTPPCADALLQAGVGRVVAAMVDPNPLVAGQGMTRLAAAG 122

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I     ++E+E       +++R    R  +T+K+ +S D    +A   S  ITG  ++  
Sbjct: 123 IECASGLLEAEACELNRGFVSRMTRGRPWLTVKLGISLDGKTALADGQSQWITGAQARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-------LNGLQE------------HSPMRII 223
           V   RA  D IL G GTV AD+P+LT R          LQ+              P+R+I
Sbjct: 183 VMRQRACHDVILTGSGTVRADNPQLTVRNLVPDVLPPALQDTPAGRLQAAAPVRQPLRVI 242

Query: 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTIL 282
           +D    L  D+ I      APV + T    P          +++   D R DL  LL  L
Sbjct: 243 VDGAGTLDPDAAIFCG---APVRMYTAATTPATGRLHGHTVVSLPGADGRVDLAALLADL 299

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
              GV  +  E G  +A + +++ LVD ++ Y + +V+G 
Sbjct: 300 GRLGVNDVWCEAGMGLAGALLHAGLVDELVCYMAPVVLGH 339


>gi|114331089|ref|YP_747311.1| riboflavin biosynthesis protein RibD [Nitrosomonas eutropha C91]
 gi|114308103|gb|ABI59346.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Nitrosomonas eutropha C91]
          Length = 367

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/321 (36%), Positives = 177/321 (55%), Gaps = 4/321 (1%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D   MS AL+ +   +  TS NP V C+IV DG V+G G     G  HAE+ AL EA
Sbjct: 7   TASDYMHMSHALQLAERGLFTTSPNPRVGCVIVNDGKVVGTGWHERVGESHAEINALREA 66

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G+ ARGAT YVTLEPCSH+GR+PPC + +I   + RV++ +DDP+  V+G+G + L + G
Sbjct: 67  GDLARGATVYVTLEPCSHHGRTPPCVEALICAEVCRVIMAMDDPNPHVNGQGKEKLQKAG 126

Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + V   ++E E +     ++TR    R  I  KIA S D  I +    S  ITG  ++  
Sbjct: 127 VEVQTGLLEDEAQQLNIGFITRMHHSRPWIRTKIAASLDGRIALKNGKSQWITGEPARQD 186

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H  RA+S AIL G+ +V  DDP LT R        P+RI+LD + ++ L +K+++ A  
Sbjct: 187 GHRWRARSCAILTGVNSVKVDDPLLTVRYIETSRQ-PIRIVLDSNLEIPLQAKLLENADT 245

Query: 243 APVIIVTENDDPVLALAFRKKNINII--YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
             +  V  +   +  L     ++ ++       DLK ++T L   G+  LLVE G  +  
Sbjct: 246 TWIFTVQADRGKIHLLEDAGAHVVVLPDLAGKVDLKAMITKLAELGINELLVEAGPVLNG 305

Query: 301 SFINSRLVDSIILYRSQIVIG 321
           + + + L+D II Y +  ++G
Sbjct: 306 ALVAAELIDEIIFYFAPNLLG 326


>gi|313894496|ref|ZP_07828060.1| riboflavin biosynthesis protein RibD [Veillonella sp. oral taxon
           158 str. F0412]
 gi|313440892|gb|EFR59320.1| riboflavin biosynthesis protein RibD [Veillonella sp. oral taxon
           158 str. F0412]
          Length = 404

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 126/349 (36%), Positives = 181/349 (51%), Gaps = 34/349 (9%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++   G TS NP V  ++VKD  +IG G     G  HAEV AL +AG+ 
Sbjct: 4   DVAYMKRAIALAKLATGHTSPNPLVGAVVVKDNTIIGEGYHHKAGTAHAEVHALNQAGDN 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YVTLEPCSHYG++PPCA  IIE GI +VVV   DP+  VSG+G+  L +  I V
Sbjct: 64  AKGATLYVTLEPCSHYGKTPPCALRIIEAGIAKVVVGSTDPNPLVSGKGMDLLREASIEV 123

Query: 127 DRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              + SE  + L+ +    ++  +  +T+K A+S D  I      S  IT   S+   H+
Sbjct: 124 VCPVCSEECVELNEHFFTYIQTGKPFVTIKSAMSLDGKIATFTGQSQWITNESSRRDGHV 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNG----------------LQEHSPMRIILDPHFK 229
           LRA  DA+L+GIGT+LAD+P+L CRL                  +  H P  IILD   +
Sbjct: 184 LRATHDAMLIGIGTILADNPQLNCRLTDTELSEALLDTSILDEPIHVHQPDVIILDSLGR 243

Query: 230 LSLDSKIIKTALLAPVIIVT-----------ENDDPVL----ALAFRKKNINIIYCDCRD 274
               S++ +       I V+           EN   ++    +++ RK     I  D + 
Sbjct: 244 TPTTSRVFEVENRKVHIFVSTGCPKDRIQALENAGAIVTVVESISTRKSKSTDIVIDIKK 303

Query: 275 LK--KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           L    +LT L   G TS+LVEGG+A+  SF+ +   D ++ Y    +IG
Sbjct: 304 LSIDDILTKLGEIGYTSVLVEGGSAIISSFVETMNFDKVVTYIGNTIIG 352


>gi|254523112|ref|ZP_05135167.1| riboflavin biosynthesis protein RibD [Stenotrophomonas sp. SKA14]
 gi|219720703|gb|EED39228.1| riboflavin biosynthesis protein RibD [Stenotrophomonas sp. SKA14]
          Length = 396

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/331 (36%), Positives = 176/331 (53%), Gaps = 13/331 (3%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P S  D + M+ ALR +      T  NP V C+I     V+G+G     G PHAEV AL 
Sbjct: 39  PFSVLDHQHMANALRLAERGAYTTRPNPMVGCVIAHGERVVGQGWHQRAGGPHAEVFALR 98

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           EAG EARGATAYVTLEPC+HYGR+PPCA  +IE G+ RVV  + DP  +V G G   L +
Sbjct: 99  EAGSEARGATAYVTLEPCAHYGRTPPCALALIEAGVSRVVAAMRDPFPKVDGGGFDLLRE 158

Query: 122 KGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI V   +M ++ +     +L+R    R  + +K+A S D    MA   S  ITG  ++
Sbjct: 159 AGIDVSEGLMAAQARELNKGFLSRVERNRPWLRVKLAASLDGRTAMADGTSKWITGAAAR 218

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK-- 238
             V   RA++ AIL G  TVLADDP LT RL   +   P+R++LD   + SL+   ++  
Sbjct: 219 EDVQHWRARAGAILTGADTVLADDPMLTVRLADAEVMPPLRVVLDSRLR-SLECSRVREG 277

Query: 239 ---TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
              T  L   I+   +       +   ++ ++      DL  +L +L  RG+  +  E G
Sbjct: 278 GTPTLYLHNAIVSPPDAADAAFASVALRHGHL------DLGAVLALLADRGINEVHTEAG 331

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           A +A + +    VD ++LY +  ++G+ G P
Sbjct: 332 ATLAGALLRGGWVDELLLYLAPTLLGDSGRP 362


>gi|238760662|ref|ZP_04621787.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia aldovae
           ATCC 35236]
 gi|238701127|gb|EEP93719.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia aldovae
           ATCC 35236]
          Length = 369

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 126/331 (38%), Positives = 180/331 (54%), Gaps = 22/331 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     TS NP+V C++V++G ++G G     G PHAEV AL  AGE+
Sbjct: 4   DEFYMARAFELARLGRFTTSPNPNVGCVLVREGEIVGEGYHLRAGEPHAEVHALRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 64  ARGATAYVTLEPCSHHGRTPPCADALVAAGVVRVVAAMQDPNPQVAGRGLYLLKQAGIAV 123

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 124 DHGVMLAEAEAVNRGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP LT R   L   +           P+RIILD H +++ + 
Sbjct: 184 FRAQSAAILSTSATVLADDPSLTVRWQELDAQTQALYPQDRLRQPVRIILDSHNRVTPEH 243

Query: 235 KIIKTALLAPVIIVTENDDP----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           K+I+      +  V  ++ P    V  L   + N  +      DL  L+  L  R + S+
Sbjct: 244 KVIQQDGPCWLARVDADEQPWPDNVEQLLLPRHNNGV------DLVLLMMQLARRQINSI 297

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            VE G  +A + + + +VD +ILY +  ++G
Sbjct: 298 WVEAGPQLAGALLQAGVVDELILYIAPKLLG 328


>gi|255655719|ref|ZP_05401128.1| riboflavin biosynthesis protein [Clostridium difficile QCD-23m63]
 gi|296451726|ref|ZP_06893457.1| riboflavin biosynthesis protein RibD [Clostridium difficile NAP08]
 gi|296878970|ref|ZP_06902968.1| riboflavin biosynthesis protein RibD [Clostridium difficile NAP07]
 gi|296259427|gb|EFH06291.1| riboflavin biosynthesis protein RibD [Clostridium difficile NAP08]
 gi|296429997|gb|EFH15846.1| riboflavin biosynthesis protein RibD [Clostridium difficile NAP07]
          Length = 370

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 113/326 (34%), Positives = 169/326 (51%), Gaps = 6/326 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++   G  + NP V C+IVKD  +IG+G     G  HAEV A+  A + 
Sbjct: 10  DIYYMKKAIELAKNGEGFVNPNPLVGCVIVKDDYIIGKGYHEKFGSNHAEVNAINSAKQS 69

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            + +T YV LEPCSHYG++PPC   II+  I+RVV+   DP+  V G G++ L    I V
Sbjct: 70  LKDSTLYVNLEPCSHYGKTPPCVDKIIQNKIKRVVISTLDPNPLVCGNGVKKLRDNNIDV 129

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
               +E E +     +      KR    +K AVS D  I      S  I+   S+   H 
Sbjct: 130 TVGTLEEEARDLNEVFFYYIKNKRPLCIVKSAVSLDGKIATKSLESKWISNESSRYLTHK 189

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R +  +I+VGI TVL D+P LTCRLN  +   P RI++D H KL L+S ++K      +
Sbjct: 190 YRNKYQSIMVGINTVLNDNPLLTCRLNQEKVSHPTRIVIDTHLKLPLNSNLVKDKTSKTI 249

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           +     +   L++  ++ N+  I    +    DL+ ++  L    + S+LVEGGA +  S
Sbjct: 250 VFTCCKESKKLSM-LKENNVETIISPSKNNLVDLEFVMYKLGELNIDSVLVEGGATLNDS 308

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS 327
              +RLVD + L+ S  +IG    P+
Sbjct: 309 LFRNRLVDKVKLFLSPKIIGGKDAPT 334


>gi|260889069|ref|ZP_05900332.1| riboflavin biosynthesis protein RibD [Leptotrichia hofstadii F0254]
 gi|260861129|gb|EEX75629.1| riboflavin biosynthesis protein RibD [Leptotrichia hofstadii F0254]
          Length = 371

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/370 (31%), Positives = 201/370 (54%), Gaps = 20/370 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
            + D ++M  A+  ++   G  + NP V  ++V+ G VIG G   Y G PHAEV AL+EA
Sbjct: 3   ENIDEKYMRMAIELAKKGAGPVNPNPMVGAVVVQGGKVIGTGYHKYFGEPHAEVYALDEA 62

Query: 64  GEEARG---ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            + ++    AT YVTLEPCSHYG++PPCA+ I++ G++R V+   DP+ +V+G+G+Q L 
Sbjct: 63  SKNSKDLSDATIYVTLEPCSHYGKTPPCAEKIVKLGLKRCVIGSSDPNPKVAGKGIQILK 122

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI + + +++ E       +    + K  ++ LK A++ D  I      S  IT   +
Sbjct: 123 NAGIEVTENILKEECDKINQVFFKYIMTKLPYLFLKCAITLDGKIATKTGNSKWITNEAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIK 238
           + +V   R +   I+VGI TVLAD+P LT R+ NG+   +P RII+DPH K   D  +IK
Sbjct: 183 REKVQFYRNKFMGIMVGINTVLADNPSLTARIENGI---NPYRIIIDPHLKTEKDYTVIK 239

Query: 239 TALLAPVIIVT--ENDDPVLALAFRKKN-INIIYCDCR--DLKKLLTILVGRGVTSLLVE 293
             +    II+T  EN +      F + + +  ++ +      K++L  +   G+ S+L+E
Sbjct: 240 ENIDEKTIIITSEENKNSEKQFDFSENSKVKFVFLNGTKFSFKEILEKIGMLGIDSILLE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN------FMCVRRDYFG 347
           GG ++        ++D+  ++ +  ++G+    S +  G+ +KN         ++ + +G
Sbjct: 300 GGQSLISQAFEEDVIDAGEIFIANKILGDTEGKSFI-AGFDKKNMNEAIVLKNIKYNVYG 358

Query: 348 SDVCLEYIGK 357
            +V  E++ K
Sbjct: 359 ENVGTEFLQK 368


>gi|188996871|ref|YP_001931122.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931938|gb|ACD66568.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 371

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 118/325 (36%), Positives = 169/325 (52%), Gaps = 10/325 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67
           +M  AL  ++   GLT  NP+V  +IVKDG +IG+G     G PHAE +A+++A E+   
Sbjct: 10  YMKIALDLAKIRKGLTHPNPTVGAVIVKDGKIIGKGYHTKAGMPHAEREAIKDAKEKGYD 69

Query: 68  -RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            +G+T +VTLEPC HYGR+PPC   IIE GI  +V+ V D +  V G+G+  L   GI +
Sbjct: 70  LKGSTMFVTLEPCCHYGRTPPCTNAIIEEGISEIVIGVLDQNPVVKGQGVNILKSHGIKV 129

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  ++E E +     + T   EKR  + LK+A S D  I      S  IT   S+   H 
Sbjct: 130 ITGVLEKECEKINEDFFTYIKEKRPFVHLKVAQSFDGKIATKTGDSKWITSEKSRQFAHQ 189

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR ++ AILVG  T L D+P LT R +   E  P+RI++D   K+     I        V
Sbjct: 190 LRKEASAILVGTNTALKDNPALTVR-HVETEKQPVRILIDKRLKVPPTYNIYNNEAKTIV 248

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAH 300
           I         L     K+N+ I++ D  +     +  +L  L  R +  LLVEGG  V  
Sbjct: 249 ITSKLASQENLKRLSEKENVEIVFLDLDENENFKIDDILKTLYAREIVHLLVEGGRGVIT 308

Query: 301 SFINSRLVDSIILYRSQIVIGEGGI 325
             I  R  D I ++ + I+IG+ GI
Sbjct: 309 DLIKERKFDKISIFTAPILIGDDGI 333


>gi|219871320|ref|YP_002475695.1| riboflavin biosynthesis protein RibD [Haemophilus parasuis SH0165]
 gi|219691524|gb|ACL32747.1| riboflavin biosynthesis protein RibD [Haemophilus parasuis SH0165]
          Length = 363

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/329 (35%), Positives = 184/329 (55%), Gaps = 15/329 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM+ A+  +    G T+ NP V C+IVKDG +I  G     G  HAE  A+    E+  G
Sbjct: 6   FMARAIELAELGRGWTNPNPLVGCVIVKDGKIIAEGYHQRYGEWHAERNAILHCQEDLSG 65

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           ATAYVTLEPC H+G +PPC+  +IE GI+ VV+   DP+  V+G+G+  L Q GI +++ 
Sbjct: 66  ATAYVTLEPCCHHGWTPPCSDLLIERGIKTVVIGSSDPNPLVAGKGVAQLRQAGIEVIEN 125

Query: 129 MMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +M++E      IF H   T    KR ++ +K A++ D  I  A   +  ITG  ++  V 
Sbjct: 126 VMKAECDALNPIFFHYIQT----KRPYVLMKYAMTADGKIATATGEAKWITGEQARANVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             R Q  AI+VG+ TVLAD+P L  R+   ++  P+RI+ D   +  L+ ++++TA    
Sbjct: 182 CTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQ--PVRIVCDSRLRTPLECQLVQTAKTYR 239

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300
            II T +DD      F+   + ++ C  +    DL  LL  L  +G+ SLL+EGG+++  
Sbjct: 240 TIIATVSDDLQKIAQFQPLGVEVLVCKAKDKRIDLADLLQKLGDQGIDSLLLEGGSSLNF 299

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPL 329
           S +N+ +V+ +  Y +  ++G     +P+
Sbjct: 300 SALNAGIVNRVHCYIAPKLVGGVTAKTPI 328


>gi|260899221|ref|ZP_05907616.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           AQ4037]
 gi|308106651|gb|EFO44191.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           AQ4037]
          Length = 374

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/335 (37%), Positives = 177/335 (52%), Gaps = 22/335 (6%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P S  D   MS AL+ +R  +  T+ NP+V C+IV+DG++IG G     G PHAEV A+ 
Sbjct: 9   PFSPQDFSMMSRALKLARRGIYTTAPNPNVGCVIVRDGVIIGEGYHHRAGEPHAEVYAMR 68

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG++A GATAYVTLEPCSHYGR+PPCA+ +I+  + RVV  ++DP+ +V+GRG+Q L +
Sbjct: 69  MAGDKAEGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMEDPNPKVAGRGIQMLRE 128

Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            G+ V   ++E++       ++         I LK+A S D    ++   S  IT   ++
Sbjct: 129 AGVEVQVGLLENDAIELNRGFIKFMQTGMPFIQLKMAASLDGQSALSNGKSQWITSPQAR 188

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----QEH-------SPMRIILDPHFK 229
             V   RAQS  IL    TVL D+  L  R + L    Q H        P R+ILD   K
Sbjct: 189 QDVQRYRAQSGGILSTSKTVLDDNASLNVRWDDLPQSVQAHYELTEVRQPARVILDRQQK 248

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
           LS D K+  T      IIV+   D    L    K I++          L  ++    +  
Sbjct: 249 LSDDLKLFSTE--GERIIVSSEGDVCPQLDQSGK-IDVTAT-------LKAVVTQHNINH 298

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           L VE GA +A S I + LVD +I+Y +  ++G  G
Sbjct: 299 LWVEAGATLASSLIKANLVDELIVYLAPKLMGSDG 333


>gi|291086763|ref|ZP_06344381.2| riboflavin biosynthesis protein RibD [Clostridium sp. M62/1]
 gi|291076874|gb|EFE14238.1| riboflavin biosynthesis protein RibD [Clostridium sp. M62/1]
          Length = 383

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 135/372 (36%), Positives = 199/372 (53%), Gaps = 23/372 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A++ ++   G  + NP V  +IVKD  +IG+G     G  HAE  AL+   E 
Sbjct: 20  DTEYMKLAIKLAKKGAGYVNPNPMVGAVIVKDNRIIGQGYHEIFGGLHAERNALKNCRES 79

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GAT YVTLEPC HYG++PPC + II+ GI RVVV   D +  VSG+G++ L +  I +
Sbjct: 80  PVGATLYVTLEPCCHYGKTPPCTEAIIKSGITRVVVGTLDCNPIVSGKGVKVLEENNIQV 139

Query: 126 VDRMMESEG----KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           V  ++E E     K+F   Y+TR +    ++ +K A++ D  I      S  I+G  ++ 
Sbjct: 140 VIGILEMECQQLIKVF-RKYVTRHI---PYVFMKYAMTMDGKIATYTNQSKWISGEKARK 195

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
           QVH  R +  AI+VG+ TV+ DDP LTCRL NG    +P+RI+ D   +  + SKIIKTA
Sbjct: 196 QVHQFRHKVTAIMVGVNTVIQDDPLLTCRLENG---ENPIRIVCDTDLRTPITSKIIKTA 252

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
                 I T + D      +RK    IIY   +    DL  L+  L    + SLL+EGG+
Sbjct: 253 NDIKTYIATSSIDESKIALYRKCGCEIIYTKKKGNHIDLMNLMQCLGNMQIDSLLLEGGS 312

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGYLEKNFMCVRRDYFGSDVCLEYI 355
           A+  S +  ++VD + +Y +  + G G   SP+  +G    N   + + Y  S V  +Y 
Sbjct: 313 AMNWSALEQQIVDEVQIYIAPKIFG-GSAKSPVSGQGVAFPNDAIMLKPYAFSQVGNDYF 371

Query: 356 GKNL----CLQE 363
            ++     CLQE
Sbjct: 372 IESEVIYPCLQE 383


>gi|168214536|ref|ZP_02640161.1| riboflavin biosynthesis protein RibD [Clostridium perfringens CPE
           str. F4969]
 gi|170714018|gb|EDT26200.1| riboflavin biosynthesis protein RibD [Clostridium perfringens CPE
           str. F4969]
          Length = 366

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/332 (35%), Positives = 179/332 (53%), Gaps = 8/332 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  AL  +R   G  + NP V  +IVK G +IG+G   + G  HAE+ A+  + + 
Sbjct: 2   DEFFMKKALELARKGEGYVNPNPLVGAVIVKGGEIIGQGYHEFFGGNHAEINAINSSIKS 61

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GAT YVTLEPC HYG++PPC + II+   +RVVV   DP+  VSG+G++ L + GI V
Sbjct: 62  IEGATIYVTLEPCCHYGKTPPCVEAIIKNKFKRVVVGTLDPNPLVSGKGIRILRESGIEV 121

Query: 127 DRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  +  +  I L+      + E R  I LK A++ D  I      S   T   S+  VH 
Sbjct: 122 NVGVLEKECIRLNEIFNFYIKENRPFIALKWAMTLDGKIATKDFKSKWTTNKKSREFVHS 181

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALLA 243
           LR +  +I+VGI TVL D+P+L CRLN  +  E    RI+LD   ++ LDS+I+K    +
Sbjct: 182 LRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKNQSES 241

Query: 244 PVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298
             +I T N  D +     + K I +I  +      ++ ++L  L  + + S+L+EGG  +
Sbjct: 242 KTLIFTTNKKDKMKNEKLKDKGIEVIEVNLDEGKININQVLACLKEKNIDSVLIEGGGNL 301

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
             SF+ ++ V+ I  + +  V G     +P+E
Sbjct: 302 NFSFLENKKVNKIYAFVAPKVFGGKNAITPVE 333


>gi|78046354|ref|YP_362529.1| riboflavin biosynthesis protein RibD
           (diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-[5-phosphoribosylamino]uracil
           reductase) [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78034784|emb|CAJ22429.1| riboflavin biosynthesis protein RibD
           (Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-[5-phosphoribosylamino]uracil
           reductase) [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 369

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/333 (35%), Positives = 182/333 (54%), Gaps = 18/333 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S+ D R+M+ ALR +      T  NP V C+IV+DG+ +G G     G PHAEV AL  
Sbjct: 8   ASADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRA 67

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPC+HYGR+PPCA  +I+ G+ RVV  + DP  +V+G G   L + 
Sbjct: 68  AGELARGATAYVTLEPCAHYGRTPPCALALIDAGVARVVAAMADPFPQVNGGGFALLREA 127

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI ++  +M ++ +     +L+R    R  + +K+  S D    +A   S  ITG  ++ 
Sbjct: 128 GIEVLSGVMHAQARTLNQGFLSRVERGRPWLRVKLGTSLDGRTALASGESKWITGSHARA 187

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTA 240
                RA++ AIL G GTV+ADDP +T RL   +    P+R++LD   + +L  + I+  
Sbjct: 188 DGQRWRARAGAILTGAGTVMADDPSMTVRLGEDMPVVPPLRVVLDAGLR-TLACRNIRQG 246

Query: 241 LLAPVIIVTEN-------DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
               + +  EN       D   LA+  +            DL  +L +L  RG+  + VE
Sbjct: 247 NAPTLYLHGENVAAPSLDDAQFLAMPLQAGRF--------DLAAVLALLAERGINEVHVE 298

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            GA ++ + + + LVD +++Y + +++G+   P
Sbjct: 299 AGAMLSGALLQAGLVDELLVYMAPVLLGDTARP 331


>gi|28897453|ref|NP_797058.1| riboflavin-specific deaminase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260366283|ref|ZP_05778739.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           K5030]
 gi|260876413|ref|ZP_05888768.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           AN-5034]
 gi|260898684|ref|ZP_05907180.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           Peru-466]
 gi|28805665|dbj|BAC58942.1| riboflavin-specific deaminase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308086936|gb|EFO36631.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           Peru-466]
 gi|308092982|gb|EFO42677.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           AN-5034]
 gi|308112701|gb|EFO50241.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           K5030]
          Length = 374

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/335 (37%), Positives = 177/335 (52%), Gaps = 22/335 (6%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P S  D   MS AL+ +R  +  T+ NP+V C+IV+DG++IG G     G PHAEV A+ 
Sbjct: 9   PFSPQDFSMMSRALKLARRGIYTTAPNPNVGCVIVRDGVIIGEGYHHRAGEPHAEVYAMR 68

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG++A GATAYVTLEPCSHYGR+PPCA+ +I+  + RVV  ++DP+ +V+GRG+Q L +
Sbjct: 69  MAGDKAEGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMEDPNPKVAGRGIQMLRE 128

Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            G+ V   ++E++       ++         I LK+A S D    ++   S  IT   ++
Sbjct: 129 AGVEVQVGLLENDAIELNRGFIKFMQTGMPFIQLKMAASLDGQSALSNGKSQWITSPQAR 188

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----QEH-------SPMRIILDPHFK 229
             V   RAQS  IL    TVL D+  L  R + L    Q H        P R+ILD   K
Sbjct: 189 QDVQRYRAQSGGILSTSKTVLDDNASLNVRWDDLPQSVQAHYELTEVRQPARVILDRQQK 248

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
           LS D K+  T      IIV+   D    L    K I++          L  ++    +  
Sbjct: 249 LSDDLKLFSTE--GERIIVSSEGDVCPQLDQSGK-IDLTAT-------LKAVVTQHNINH 298

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           L VE GA +A S I + LVD +I+Y +  ++G  G
Sbjct: 299 LWVEAGATLASSLIKANLVDELIVYLAPKLMGSDG 333


>gi|269469107|gb|EEZ80655.1| pyrimidine deaminase [uncultured SUP05 cluster bacterium]
          Length = 350

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/322 (34%), Positives = 177/322 (54%), Gaps = 21/322 (6%)

Query: 4   SSFDARFMSAALRFS---RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           S  D+ +M+ AL+ +   R+ VG    NP V C+IVKD  +I +G     G  H E+ AL
Sbjct: 6   SKNDSHYMAIALKLANEGRYGVG---ANPMVGCVIVKDDQIIAKGYHQTFGEAHGEINAL 62

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           ++   +A GAT YVTLEPCSH G++PPCAQ II+ G ++V++ + DP+  VSG+G+  L 
Sbjct: 63  KQIDHQAHGATFYVTLEPCSHQGKTPPCAQAIIDSGAKKVIIALLDPNPLVSGKGMAMLE 122

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI ++  +ME++       ++ R       +T KIA+S D    M    S  ITG  +
Sbjct: 123 NSGIEVITGLMENKALELNRGFVKRMQTGLPFVTCKIAMSLDGKTSMTSGESKWITGEPA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  V  LRA   AI+ G GT++ D+P +T RLN +   SP+R+++D        ++I  T
Sbjct: 183 RQDVQKLRANHQAIITGSGTIITDNPSMTVRLNNINS-SPLRVVIDSK------NQIQDT 235

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           AL      +  ND P L L     N+ ++     DL   L  L  +G+ + L+E G  + 
Sbjct: 236 AL-----NIFSNDAPTLIL--NTNNVQVLESGKLDLNDALKHLGDQGINNALLEAGPGLI 288

Query: 300 HSFINSRLVDSIILYRSQIVIG 321
            + + ++L+D  I+Y + I++G
Sbjct: 289 GAMLEAKLIDEFIIYTAPILMG 310


>gi|296448857|ref|ZP_06890691.1| riboflavin biosynthesis protein RibD [Methylosinus trichosporium
           OB3b]
 gi|296253636|gb|EFH00829.1| riboflavin biosynthesis protein RibD [Methylosinus trichosporium
           OB3b]
          Length = 375

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 144/370 (38%), Positives = 186/370 (50%), Gaps = 21/370 (5%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P +  D  FM+AAL F R ++G T  NP+V  LIVKDG+VI RG TA GG PHAE  A+ 
Sbjct: 6   PFAQQDDAFMAAALAFGRRNMGRTGPNPAVGALIVKDGVVIARGATAVGGRPHAEAVAVA 65

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AGE ARGAT Y TLEPCSH+G +PPC   II  GI RVV  ++DPD RV+GRG   L +
Sbjct: 66  AAGEAARGATLYATLEPCSHHGATPPCVDAIIGAGIARVVSALEDPDARVAGRGHARLRE 125

Query: 122 KGIIVD---RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP---IT 175
            GI V    R  E+      H  + R  + R  +TLK+A + D     AG    P   IT
Sbjct: 126 AGIEVAVGVRAREARADHLGH--ILRVTQGRPLVTLKLAQTADGY--AAGAEHDPRLFIT 181

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
           G ++    H+ RA   AI++G GT   DDP LT RL GL+   P+R++LD   +LS  S+
Sbjct: 182 GAVADAATHIERALHGAIMIGAGTASVDDPLLTVRLPGLEGVKPLRVVLDAGLRLSRRSR 241

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-------LKKLLTILVGRGVT 288
           +  TA   P +++        A A       I              L   L  L  RGVT
Sbjct: 242 LAATARETPTLVIAGEKVAEAAAAEFFDATAIEVARVAQEASGRLVLSAALAELAARGVT 301

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG--IPSPLEEGYLEKN--FMCVRRD 344
            +  EGG  VA S +   L D ++L+  +  +G  G    SP     LE    +      
Sbjct: 302 RVFSEGGPRVAESLLLGALADEVVLHTGRKPLGRPGRLALSPAARARLEDRAAYRLADEA 361

Query: 345 YFGSDVCLEY 354
             GSD    Y
Sbjct: 362 MLGSDHMTRY 371


>gi|91209482|ref|YP_539468.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli UTI89]
 gi|117622675|ref|YP_851588.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli APEC O1]
 gi|218557323|ref|YP_002390236.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli S88]
 gi|237707592|ref|ZP_04538073.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia
           sp. 3_2_53FAA]
 gi|91071056|gb|ABE05937.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Escherichia coli UTI89]
 gi|115511799|gb|ABI99873.1| bifunctional pyrimidine deaminase/reductase [Escherichia coli APEC
           O1]
 gi|218364092|emb|CAR01757.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli S88]
 gi|226898802|gb|EEH85061.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia
           sp. 3_2_53FAA]
 gi|294490690|gb|ADE89446.1| riboflavin biosynthesis protein RibD [Escherichia coli IHE3034]
 gi|315289871|gb|EFU49261.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 110-3]
 gi|323952974|gb|EGB48842.1| riboflavin biosynthesis protein RibD [Escherichia coli H252]
 gi|323958607|gb|EGB54310.1| riboflavin biosynthesis protein RibD [Escherichia coli H263]
          Length = 367

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 193/371 (52%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEVQAL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVQALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++           E+     + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|291534448|emb|CBL07560.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Roseburia intestinalis M50/1]
          Length = 366

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/333 (36%), Positives = 181/333 (54%), Gaps = 18/333 (5%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GE 65
           R+M  A+  +    G T TNP V  ++VK+  +IG G     G  HAE +AL +    GE
Sbjct: 5   RYMRRAMELAELGRGWTKTNPVVGAVLVKEDRIIGEGYHKKFGGLHAEREALADCRSRGE 64

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +  GA  YVTLEPC HYG++PPC Q +IE GI  V V  +D +  V+G G++ L ++GI+
Sbjct: 65  DPAGADLYVTLEPCCHYGKTPPCTQAVIEAGISHVFVGAEDINPLVAGAGIRQLREQGIL 124

Query: 126 VDRMM-----ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           V   +     E + ++F H   T    K  ++ +K A++ D  I  A   S  ITG  ++
Sbjct: 125 VTEGVLQEECEYQNRVFFHYIQT----KLPYVRMKYAMTLDGKIASASGKSQWITGEAAR 180

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            QVH +R +   I+VG GTV+ADDP L CRL   Q   P+RI+ D   ++ L S+I++TA
Sbjct: 181 EQVHRMRHEMTGIMVGAGTVIADDPMLNCRLP--QTKDPVRIVCDTTLRIPLKSRIVQTA 238

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINII---YCDCR-DLKKLLTILVGRGVTSLLVEGGA 296
                II T   D      ++K    II   + D + DLK+L+  L   G+ S+L+EGGA
Sbjct: 239 EEQNTIIATCCQDEAKIREYQKYGCRIIVTEHADGKVDLKELMRQLGADGIESVLLEGGA 298

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
            +  S + + +V+ +  Y +  + G     SP+
Sbjct: 299 MLNWSALEAGIVNEVYAYVAPKLFGGADAKSPV 331


>gi|322514846|ref|ZP_08067864.1| riboflavin biosynthesis protein RibD [Actinobacillus ureae ATCC
           25976]
 gi|322119150|gb|EFX91295.1| riboflavin biosynthesis protein RibD [Actinobacillus ureae ATCC
           25976]
          Length = 361

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 119/362 (32%), Positives = 196/362 (54%), Gaps = 20/362 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++  +G T+ NP V C+IVK+G ++  G     G  HAE  A+    E+
Sbjct: 3   DLDYMRRAIVLAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAILHCKED 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
              ATAYVTLEPC H+GR+PPC+  +IE GI++V +   DP+  V+GRG   L Q G+ +
Sbjct: 63  LSEATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGASQLRQAGVEV 122

Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           V+ +++ E      IF H   T    KR ++ +K A++ D  I  +   S  ITG  ++ 
Sbjct: 123 VEGLLKDECDALNPIFFHYIQT----KRPYVLMKYAMTADGKIATSTGESKWITGESARA 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +V   R Q  AI+VG+ TVLAD+P L  R+  +++  P+RI+ D   +  LD ++++TA 
Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNVKQ--PVRIVCDSQLRTPLDCQLVQTAK 236

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
               +I T +DD      FR   + ++ C  R    DL+ LL  L    + SLL+EGG++
Sbjct: 237 EYRTVIATVSDDLQKIEQFRPPGVEVLVCKARNKRVDLQDLLQKLGDMQIDSLLLEGGSS 296

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352
           +  S + S +V+ +  Y +  ++G     +P+    +++    V+      +  G D+ L
Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356

Query: 353 EY 354
           +Y
Sbjct: 357 DY 358


>gi|238019274|ref|ZP_04599700.1| hypothetical protein VEIDISOL_01138 [Veillonella dispar ATCC 17748]
 gi|237863973|gb|EEP65263.1| hypothetical protein VEIDISOL_01138 [Veillonella dispar ATCC 17748]
          Length = 404

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 129/349 (36%), Positives = 179/349 (51%), Gaps = 34/349 (9%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++   G TS NP V  ++VKD  +IG G     G  HAEV AL +AG+ 
Sbjct: 4   DVAYMKRAIALAKLATGHTSPNPLVGAVVVKDNTIIGEGYHHKAGTAHAEVHALNQAGDN 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YVTLEPCSHYG++PPCA  IIE GI +VVV   DP+  VSG+G+  L + GI V
Sbjct: 64  AKGATLYVTLEPCSHYGKTPPCALRIIEAGIAKVVVGSTDPNPLVSGKGMDLLREAGIEV 123

Query: 127 DRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              + SE    L+ +    ++  +  +T+K A+S D  I      S  IT   S+   H+
Sbjct: 124 VCPVCSEECAELNEHFFTYIQTGKPFVTIKSAMSLDGKIATFTGQSQWITNDSSRRDGHI 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNG----------------LQEHSPMRIILDPHFK 229
           LRA  DA+LVGIGT+LAD+P+L CRL                  +  H P  IILD   +
Sbjct: 184 LRATHDAMLVGIGTILADNPQLNCRLTDTELSEALLDTSILDETIHVHQPDVIILDSLGR 243

Query: 230 LSLDSKIIKTALLAPVIIVTEN--DDPVLAL-------------AFRKKNINIIYCDCRD 274
               S + +       I V++    + + AL             A RK     I  D + 
Sbjct: 244 TPTTSHVFEVDNRKVHIFVSKGCPKERIQALEQVGALVTVVESVATRKSKSTDIVIDIKK 303

Query: 275 LK--KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           L    +LT L   G TS+LVEGG+A+  SF+ +   D ++ Y    +IG
Sbjct: 304 LSIDDILTKLGDFGYTSVLVEGGSAIISSFVETLNFDKVVTYIGNTIIG 352


>gi|170719753|ref|YP_001747441.1| riboflavin biosynthesis protein RibD [Pseudomonas putida W619]
 gi|169757756|gb|ACA71072.1| riboflavin biosynthesis protein RibD [Pseudomonas putida W619]
          Length = 376

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 114/333 (34%), Positives = 180/333 (54%), Gaps = 15/333 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            DA +M+ AL  +R  +  T  NP V C+IV+DG V+G G     G PHAEV AL +AGE
Sbjct: 8   LDAHYMARALELARKGIYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQAGE 67

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            ARGA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV  + DP+ +V+G+GL+ L++ GI 
Sbjct: 68  RARGACAYVTLEPCSHHGRTPPCAEALVQAGVARVVAAMQDPNPQVAGQGLRRLAEAGIE 127

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   ++E++ +     +L R       +  K+A+S D    MA   S  ITG  +++ V 
Sbjct: 128 VASGVLEAQARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARSAVQ 187

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDS 234
            LRA +  +L    +VLAD+  +T R   L             +P+R+++D   +L LD+
Sbjct: 188 RLRASASVVLTSAASVLADNARMTVRGAELGLDPDATALALSRTPLRVLIDGRLRLPLDA 247

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVE 293
              +     P ++VT   D         + +++   + + DL  L+  L  RGV  +L+E
Sbjct: 248 PFFQA---GPALVVTAMGDDTRYGQAGHELLSLPGSNGQVDLLALMQALAARGVNDILLE 304

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            GA +  +F    L+D   L+ +   +G    P
Sbjct: 305 AGAGLVGAFAQLGLIDEYQLFVAGTFLGSQARP 337


>gi|295677354|ref|YP_003605878.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1002]
 gi|295437197|gb|ADG16367.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1002]
          Length = 383

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 126/357 (35%), Positives = 191/357 (53%), Gaps = 21/357 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  ++  +  T  NP V C++V++G VIG G T   G  HAE++AL++A
Sbjct: 3   SQTDFVHMERALALAKRGMYTTDPNPRVGCVLVRNGEVIGEGYTQPAGQDHAEIRALKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G + RGATAYVTLEPCSH+GR+PPCA  +IE  I RV+  ++DP+ +VSGRGL  L 
Sbjct: 63  RSRGHDLRGATAYVTLEPCSHFGRTPPCANALIEAQIGRVIAAMEDPNPQVSGRGLAMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI V   ++ +E +     +++R    R  + +K+A S D   G+    S  IT   +
Sbjct: 123 EAGIEVRCGLLANEARELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGESQWITSAAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H  RA++ AIL GIGTV  D+P +T R        P R+++D    + LD++I+  
Sbjct: 183 RADGHAWRARASAILTGIGTVREDNPRMTVRAVDTPRQ-PHRVLIDSQLDVPLDAQILAG 241

Query: 240 ALLAPVIIVTENDDPVL---ALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLV 292
              AP +I     D  L   A+A R++   I+         DL ++L++L  R V  L V
Sbjct: 242 ---APTLIFCGELDARLEERAVALRERGAEIVPLPNAFGKVDLPRMLSVLGERNVNELHV 298

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEG-----GIPSP-LEEGYLEKNFMCVRR 343
           E G  +  S +    VD +++Y +  ++G        + SP L E  ++ NF  V R
Sbjct: 299 EAGYKLNGSLLREGCVDELLVYLAPSLLGMDSMSMFNLDSPDLLEDRVKLNFHMVER 355


>gi|327479375|gb|AEA82685.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri DSM
           4166]
          Length = 366

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/338 (34%), Positives = 178/338 (52%), Gaps = 24/338 (7%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D  +M+ AL+ +R  +  T  NP V C+IV DG ++G G     G PHAEV AL +AG
Sbjct: 2   TTDHAWMARALQLARKGLYSTHPNPRVGCVIVADGELVGEGWHVRAGEPHAEVHALRQAG 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGATAYVTLEPCSHYGR+PPCA+ +++ G+ RVV  + DP+ +V+G GL+ L   GI
Sbjct: 62  ERARGATAYVTLEPCSHYGRTPPCAEALVKAGVGRVVAAMQDPNPQVAGNGLERLRSAGI 121

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++E E +     +  R      ++  K+A+S D    MA   S  ITG  ++ +V
Sbjct: 122 EVASGVLEGEARELNAGFTKRMESGLPYVRAKLAMSLDGRTAMASGESQWITGPAARAEV 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLD 233
             LRA+S  +L G  TVL D   LT R   L           +  P+R+++D   ++ LD
Sbjct: 182 QRLRARSSVVLTGADTVLMDAARLTVRGAELGLDAETTALALQRPPLRVLVDGRLRVPLD 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLA---LAFRKKNIN--IIYCDCRDLKKLLTILVGRGVT 288
           +   +     P ++VT     V+A     +R+      ++  +  DL  LL  L  RG  
Sbjct: 242 APFFQA---GPALVVT-----VVAGCEETYRRAGHEALVLGQERVDLTSLLRELAARGAN 293

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            +LVE G  +  +F +  L+D   L+ +   +G    P
Sbjct: 294 EVLVEAGPRLVGAFASLGLIDEYQLFMAAKFLGSSARP 331


>gi|306820099|ref|ZP_07453747.1| riboflavin biosynthesis protein RibD [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551877|gb|EFM39820.1| riboflavin biosynthesis protein RibD [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 365

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 116/337 (34%), Positives = 176/337 (52%), Gaps = 17/337 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   D ++M  A+  ++  +G TS NP V  +IVKD  +IGRG     G  HAEV AL+ 
Sbjct: 2   LKDIDKKYMKLAIDLAKNGIGRTSPNPIVGAVIVKDNQIIGRGWHEKYGEAHAEVNALDN 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                 GAT YVTLEPC H+G+ PPC   IIE GI  VV+   DP+ +VSG+G Q L   
Sbjct: 62  CQVSPNGATMYVTLEPCCHFGKQPPCTSKIIESGISHVVIGSFDPNPQVSGKGSQILKNS 121

Query: 123 GI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
            I     ++ R  +    +F H   T     R ++ LK A++ D  I      S  ITG 
Sbjct: 122 EIKVTQSVLQRECDELNTVFFHYIKTN----RPYVILKYAMTADGKIATYTGESKWITGE 177

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKI 236
            ++ QVH  R +  AI+VG+GTVL D+P L CR+ NG   ++P+R+I D   +    S +
Sbjct: 178 KARKQVHRDRDRYSAIMVGVGTVLKDNPMLNCRIENG---NNPLRVICDTKLRTPFTSNV 234

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLV 292
           +KTA   P +I T ++D      +      +I      +  DL +L+ +L    + S++V
Sbjct: 235 VKTASEIPTLIATASEDNARWRQYEAYGCKLIKIPKDGESIDLVELIKVLGENKIDSVIV 294

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
           EGGA +  S + + L++ + +Y    + G     +P+
Sbjct: 295 EGGAKLNWSILKASLMNKVQVYVGAKLFGGANAKTPI 331


>gi|209527094|ref|ZP_03275608.1| riboflavin biosynthesis protein RibD [Arthrospira maxima CS-328]
 gi|209492434|gb|EDZ92775.1| riboflavin biosynthesis protein RibD [Arthrospira maxima CS-328]
          Length = 388

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 114/328 (34%), Positives = 177/328 (53%), Gaps = 3/328 (0%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           VS FD + M   L  ++  +G T+ NP V C+IV+D  +IG G     G PHAE+ AL  
Sbjct: 9   VSEFDRQMMRNCLNLAKEGLGKTAPNPLVGCVIVRDDQIIGEGFHPGPGQPHAEIFALRS 68

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGAT YV LEPC+HYGR+PPC++ +I+ G+ +VV  + DP+  V G+G+  L Q 
Sbjct: 69  AGELARGATVYVNLEPCNHYGRTPPCSEALIKAGVAKVVAGMVDPNPLVGGQGIAKLRQA 128

Query: 123 GIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V   +E    + L+ A++ R + K++   LK A++ D  I      S  +TG I++ 
Sbjct: 129 GIEVIVGVEESACLKLNEAFVHRIIYKQTFGILKYAMTLDGKIATDTGHSAWVTGAIARQ 188

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +VH LR   DA++VG  TV  D+P LT   +G  E +P+R+++     L   +++  T+ 
Sbjct: 189 EVHRLRVACDAVIVGGNTVRRDNPHLTT--HGQGEPNPLRVVMSRSLDLPSSARLWDTSE 246

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            A ++       P      RKK + ++        K+++    R   S+L E G  +A  
Sbjct: 247 AATIVFTEVGSRPDFQEHLRKKGVEVLEFAPLTPAKVMSYFYERQFLSVLWECGGRLASE 306

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPL 329
            I    V  I+ + +  +IG    PSP+
Sbjct: 307 AITQGCVHKILAFIAPKIIGGQAAPSPV 334


>gi|256821696|ref|YP_003145659.1| riboflavin biosynthesis protein RibD [Kangiella koreensis DSM
           16069]
 gi|256795235|gb|ACV25891.1| riboflavin biosynthesis protein RibD [Kangiella koreensis DSM
           16069]
          Length = 372

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 119/375 (31%), Positives = 197/375 (52%), Gaps = 23/375 (6%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  ++ D+ +M+ A++ +      T TNP V C++VKD I+IG G     G  HAE+ AL
Sbjct: 1   MSFTAQDSSYMARAIQLAPRGWFTTRTNPRVGCVLVKDNIIIGEGWHEKPGFAHAEINAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE A+GATAYVTLEPC+H+G++ PCA+ ++E G+ RVV  + DP+  V+G+G++ L 
Sbjct: 61  NHAGESAKGATAYVTLEPCAHHGKTGPCAEALVEAGVARVVAAMLDPNPLVAGKGMKILE 120

Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI  +  +M+++ +     ++ R  +    +  K+ +S D    MA   S  ITG  +
Sbjct: 121 KAGIKTEYGLMQAQAETLNPGFIKRMTKGLPRVIAKVGMSLDGRTAMAIGESQWITGASA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH----SPMRIILDPHFKLSLDSK 235
           +  V  LRA+S AI+ G GTV+ D+P +  R      +     P+R+I+D    +  D+K
Sbjct: 181 RRDVQRLRAESGAIITGSGTVVIDNPSMNVREQAFTANPHFTQPVRVIIDSQNIVEPDAK 240

Query: 236 IIK--------TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
           I          +  L+        +   +AL   K  ++       DLK LL +L   G+
Sbjct: 241 IFSHEGHCWLVSGHLSEKGYPANVEQKTVALLPGKDEVS---HQKVDLKALLIMLAEAGI 297

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRD 344
             +L+E G+ +  +F+   LVD +++Y +  ++G    P    PLE   +++N      D
Sbjct: 298 NDVLIEAGSGLVGAFVAQELVDELVVYMAPKLMGSAARPMFQLPLET--MQQNIELTLND 355

Query: 345 --YFGSDVCLEYIGK 357
               G+D+ L Y  K
Sbjct: 356 IRQIGNDLRLNYYFK 370


>gi|209694491|ref|YP_002262419.1| pyrimidine deaminase/pyrimidine reductase (riboflavin biosynthesis
           protein RibD) [Aliivibrio salmonicida LFI1238]
 gi|208008442|emb|CAQ78607.1| pyrimidine deaminase/pyrimidine reductase (riboflavin biosynthesis
           protein RibD) [Aliivibrio salmonicida LFI1238]
          Length = 373

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/342 (34%), Positives = 182/342 (53%), Gaps = 25/342 (7%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  +  D   M  A++ ++  +  T+ NP+V C++VK+G+++G G     G PHAEV AL
Sbjct: 1   MKFTPQDHLMMQRAIQLAKRGIYTTAPNPNVGCVLVKNGLIVGEGAHLKAGEPHAEVHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +A E A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+GRGL  L 
Sbjct: 61  RQASENAKGATAYVTLEPCSHYGRTPPCAEGLIKAGVVKVICAMVDPNPQVAGRGLAMLE 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI     ++E+E +    ++LTR    +  + LK+A S D    +    S  IT   +
Sbjct: 121 AAGIETASGLLETESRALNPSFLTRMETGKPFVQLKMAASLDGKTALKNGVSQWITSKEA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL----NGLQE-------HSPMRIILDPHF 228
           +  V   RAQ+  IL    TV+ D+  L  R     N +QE         P+R+ILD   
Sbjct: 181 RQDVQRYRAQAGVILSTAKTVIEDNASLNVRWSDLPNSIQESYLEAEVRQPLRVILDRQH 240

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL------TIL 282
           +L+ +  +  T       +VT +  P   L+  + +   +YCD  + K+L+       I 
Sbjct: 241 QLTSELALFNTT----GNVVTVSHQPSHPLSHPESH---LYCDLDNNKQLVLSDVIQKIA 293

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
               V  L VE GA +A S I   LVD +I+Y +  ++G  G
Sbjct: 294 QEHNVNHLWVEAGATLAASMICEGLVDELIIYLAPKLMGADG 335


>gi|319941823|ref|ZP_08016145.1| AMP deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Sutterella wadsworthensis 3_1_45B]
 gi|319804756|gb|EFW01623.1| AMP deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Sutterella wadsworthensis 3_1_45B]
          Length = 415

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/343 (35%), Positives = 179/343 (52%), Gaps = 16/343 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D  +M  AL  +R    ++  NPSV  +IV++G ++G G T   G PHAEV AL  A
Sbjct: 52  SAADDAWMDLALAQARKAWRISPPNPSVGAVIVRNGRLVGAGHTQRTGGPHAEVMALRSA 111

Query: 64  GEEA---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            E      GAT YVTLEPCSHYGR+PPCA  +I+  + RVV  V DP+ +V GRG++ L 
Sbjct: 112 FERGLSVEGATVYVTLEPCSHYGRTPPCALALIQSKVGRVVAAVGDPNPKVHGRGIRMLL 171

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI  +  + E+E +    A+LTR       + +K AV+ D         S  ITG  +
Sbjct: 172 EAGIPAELGVREAEAREVNIAFLTRMTRGTPWVRMKTAVTLDGRTAFPDGRSQWITGEAA 231

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  V   R ++ A+L GIGTVLADDP++  RL   QE  P+RI++DP  +     K++ T
Sbjct: 232 RADVQFWRGRAGAVLTGIGTVLADDPQMNVRLPD-QERQPLRIVIDPRMETPPAGKLL-T 289

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINI-IYCDCR-----DLKKLLTILVGRGVTSLLVE 293
           +    V I    + P    A       + +  D       DL++L+  L  R V  + VE
Sbjct: 290 SKGGKVFIAAAAEYPTRRAALEAAGAEVWVLPDAAVPGRVDLRELMRELAKREVNEVHVE 349

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEG 332
            G  ++ +   + L+D ++ Y +  + G G     +P P E G
Sbjct: 350 AGPRLSGALFAAGLIDEMLFYYAPCLFGAGMGPAAVPLPAEPG 392


>gi|288574956|ref|ZP_06393313.1| riboflavin biosynthesis protein RibD [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570697|gb|EFC92254.1| riboflavin biosynthesis protein RibD [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 356

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/327 (37%), Positives = 182/327 (55%), Gaps = 22/327 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  +    G TS NP V C+I +DG ++G G     G PHAE +AL  A   
Sbjct: 7   DVTYMRRALSLAMRGTGYTSPNPMVGCVIARDGEILGEGYHRRCGAPHAEREALMSAVGG 66

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GATAYVTLEPCSH+G++PPCA  ++E GI R VV   DPD RVSGRG++ L   G+ V
Sbjct: 67  VAGATAYVTLEPCSHHGKTPPCAPALVEAGIGRCVVATVDPDPRVSGRGIEILRSAGVDV 126

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E +     ++   +     +T+K A+S D  + +    S  IT   S+ + HL
Sbjct: 127 SVGVLEEECRWLNRGFIKGALAGLPWVTVKAAISLDGDMSLPDGKSKWITNGTSRVKAHL 186

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII---LDPHFKLSLDSK-IIKTAL 241
           LR++SDA++VG GTV ADDP LT R   +   SP+ ++   +D + ++ LD + II T  
Sbjct: 187 LRSESDAVMVGRGTVTADDPALTVR--DVPGKSPIPVVIGGIDENRRVFLDDRCIIYTKR 244

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            A +     N + V+     +KN  +      DL+ +L  L G GV  LLVEGG  +  S
Sbjct: 245 FAGL-----NGERVIP----EKNGQV------DLETVLRDLYGSGVRRLLVEGGGRIISS 289

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSP 328
            ++  LVD + L+ +  ++G+G   +P
Sbjct: 290 LLSDGLVDEVSLFVAPKIMGQGQTMTP 316


>gi|110802102|ref|YP_697858.1| riboflavin biosynthesis protein RibD [Clostridium perfringens
           SM101]
 gi|110682603|gb|ABG85973.1| riboflavin biosynthesis protein RibD [Clostridium perfringens
           SM101]
          Length = 365

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/332 (35%), Positives = 176/332 (53%), Gaps = 8/332 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  AL  +R   G  + NP V  +IVK G +IG G   + G  HAE+ A+  + + 
Sbjct: 2   DEFFMKKALELARKGEGYVNPNPLVGAVIVKGGEIIGEGYHEFFGGDHAEINAINSSVKS 61

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GAT YVTLEPC HYG++PPC + II+   + VVV   DP+  VSG G++ L + GI V
Sbjct: 62  TEGATIYVTLEPCCHYGKTPPCVEAIIKNKFKTVVVGTLDPNPLVSGNGIKILREAGIEV 121

Query: 127 DRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +  +  I L+      + E R  I LK A++ D  I      S  IT   S+  VH 
Sbjct: 122 KVGVLEKECIRLNEIFNFYIKENRPFIALKWAMTLDGKIATKDFKSKWITNKKSREFVHS 181

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALLA 243
           LR +  +I+VGI TVL D+P+L CRLN  +  E    RI+LD   K+ LDS+I+K    +
Sbjct: 182 LRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLKIPLDSEILKNQSES 241

Query: 244 PVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298
             +I T N  D +     + K I +I  +      ++ ++L  L  + + S+L+EGG  +
Sbjct: 242 KTLIFTTNKKDKIKNEKLKDKGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEGGGNL 301

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
             SF+ ++ V+ I  + +  V G     +P+E
Sbjct: 302 NFSFLENKKVNKIYAFVAPKVFGGKNAITPVE 333


>gi|309778325|ref|ZP_07673252.1| riboflavin biosynthesis protein RibD [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308913921|gb|EFP59734.1| riboflavin biosynthesis protein RibD [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 366

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 135/372 (36%), Positives = 198/372 (53%), Gaps = 23/372 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A++ ++   G  + NP V  +IVKD  +IG+G     G  HAE  AL+   E 
Sbjct: 3   DTEYMKLAIKLAKKGAGYVNPNPMVGAVIVKDNRIIGQGYHEIFGGLHAERNALKNCRES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GAT YVTLEPC HYG++PPC + II+ GI RVVV   D +  VSG+G++ L +  I +
Sbjct: 63  PVGATLYVTLEPCCHYGKTPPCTEAIIKSGITRVVVGTLDCNPIVSGKGVKVLEENNIQV 122

Query: 126 VDRMMESEG----KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           V  ++E E     K+F   Y+TR +    ++ +K A++ D  I      S  I+G  ++ 
Sbjct: 123 VIGILEMECQQLIKVF-RKYVTRHI---PYVFMKYAMTMDGKIATYTNQSKWISGEKARK 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
           QVH  R +  AI+VG+ TV+ DDP LTCRL NG    +P+RI+ D   +  + SKIIKTA
Sbjct: 179 QVHQFRHKVTAIMVGVNTVIQDDPLLTCRLENG---ENPIRIVCDTDLRTPITSKIIKTA 235

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
                 I T + D      +RK    IIY   +    DL  L+  L    + SLL+EGG 
Sbjct: 236 NDIKTYIATSSIDESKIALYRKCGCEIIYTKKKGNHIDLMNLMQCLGNMQIDSLLLEGGN 295

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGYLEKNFMCVRRDYFGSDVCLEYI 355
           A+  S +  ++VD + +Y +  + G G   SP+  +G    N   + + Y  S V  +Y 
Sbjct: 296 AMNWSALEQQIVDEVQIYIAPKIFG-GSAKSPVSGQGVAFPNDAIMLKPYAFSQVGNDYF 354

Query: 356 GKNL----CLQE 363
            ++     CLQE
Sbjct: 355 IESEVIYPCLQE 366


>gi|261341007|ref|ZP_05968865.1| riboflavin biosynthesis protein RibD [Enterobacter cancerogenus
           ATCC 35316]
 gi|288316872|gb|EFC55810.1| riboflavin biosynthesis protein RibD [Enterobacter cancerogenus
           ATCC 35316]
          Length = 367

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/328 (36%), Positives = 183/328 (55%), Gaps = 16/328 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A++ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEIYMARAMKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPC + +I  G+ RVV  + DP+ +V+GRGL  L Q+GI V
Sbjct: 63  ARGATAYVTLEPCSHHGRTPPCCEALIAAGVSRVVASMQDPNPQVAGRGLYRLQQEGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M  + +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMQDAEALNKGFLKRMRTGFPYIQLKLGASLDGRTAMANGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP +T R + L         QE+   P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSETVLADDPAMTVRWDELNADTQALYPQENLRQPLRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVE 293
           +I+       +   T++D        R  +I +   +      +L +L+G+  V S+ VE
Sbjct: 243 RIVHQPGET-LFARTKDDSRQWPEGVR--SIMVPEHNGHLDLVVLMMLLGKQQVNSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG 321
            G  +A + + + LVD +I+Y + +++G
Sbjct: 300 AGPTLAGALLQAGLVDELIVYVAPVLLG 327


>gi|82775681|ref|YP_402028.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Shigella dysenteriae Sd197]
 gi|309787001|ref|ZP_07681613.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 1617]
 gi|81239829|gb|ABB60539.1| bifunctional pyrimidine deaminase/reductase [Shigella dysenteriae
           Sd197]
 gi|308924579|gb|EFP70074.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 1617]
          Length = 367

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L E           H P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLHQPVRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
            I++           E+     + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 HIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|146281221|ref|YP_001171374.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri A1501]
 gi|145569426|gb|ABP78532.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri A1501]
          Length = 359

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/332 (35%), Positives = 176/332 (53%), Gaps = 24/332 (7%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ +R  +  T  NP V C+IV DG ++G G     G PHAEV AL +AGE ARGA
Sbjct: 1   MARALQLARKGLYSTHPNPRVGCVIVADGELVGEGWHVRAGEPHAEVHALRQAGERARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPCSHYGR+PPCA+ +++ G+ RVV  + DP+ +V+G GL+ L   GI +   +
Sbjct: 61  TAYVTLEPCSHYGRTPPCAEALVKAGVGRVVAAMQDPNPQVAGNGLERLRSAGIEVASGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E E +     ++ R      ++  K+A+S D    MA   S  ITG  ++ +V  LRA+
Sbjct: 121 LEGEARELNAGFIKRMESGLPYVRAKLAMSLDGRTAMASGESQWITGPAARAEVQRLRAR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDSKIIKT 239
           S  +L G  TVL D   LT R   L           +  P+R+++D   ++ LD+   + 
Sbjct: 181 SSVVLTGADTVLMDAARLTVRGAELGLDAETTALALQRPPLRVLVDGRLRVPLDAPFFQA 240

Query: 240 ALLAPVIIVTENDDPVLA---LAFRKKNIN--IIYCDCRDLKKLLTILVGRGVTSLLVEG 294
               P ++VT     V+A     +R+      ++  +  DL  LL  L  RG   +LVE 
Sbjct: 241 ---GPALVVT-----VVAGCEETYRRAGHEALVLGQERVDLTSLLRELAARGANEVLVEA 292

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           G  +  +F +  L+D   L+ +   +G    P
Sbjct: 293 GPRLVSAFASLGLIDEYQLFMAAKFLGSSARP 324


>gi|215485495|ref|YP_002327926.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli O127:H6 str. E2348/69]
 gi|312964564|ref|ZP_07778820.1| riboflavin biosynthesis protein RibD [Escherichia coli 2362-75]
 gi|215263567|emb|CAS07897.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|312290798|gb|EFR18675.1| riboflavin biosynthesis protein RibD [Escherichia coli 2362-75]
          Length = 367

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 131/367 (35%), Positives = 190/367 (51%), Gaps = 20/367 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +   + +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNNGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           +I++             DD        +  +   +    DL  L+  L  + + S+ VE 
Sbjct: 243 RIVQQP--GETWFARTQDDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349
           G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      + G D
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCLLPG-LEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|297617055|ref|YP_003702214.1| riboflavin biosynthesis protein RibD [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144892|gb|ADI01649.1| riboflavin biosynthesis protein RibD [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 364

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 126/334 (37%), Positives = 186/334 (55%), Gaps = 12/334 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           S D ++M  A+  +   +G TS NP V  ++V +G V+G G     G PHAE+ AL +AG
Sbjct: 2   SIDEKYMGRAVELAVQALGRTSPNPVVGAVVVLEGEVVGEGYHQLAGTPHAEIHALNQAG 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGAT YVTLEPC HYG++PPC   II  GI+RVVV + DP+ +VSG+G+  L   GI
Sbjct: 62  ERARGATLYVTLEPCCHYGKTPPCVDAIIGSGIKRVVVAIQDPNPQVSGQGIARLKAAGI 121

Query: 125 IVDRMMES----EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            V+  +          F   ++T  +     + LK A++ D  I      S  +TG  ++
Sbjct: 122 EVEVGVLEEEARRANEFFFKFITTGM---PFVALKTAMTMDGKIATRTGDSRWVTGEKAR 178

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             VH LR   DA+LVG+GTVL D+P L  RL+   +  PMR+ILD   ++ LDS+I+ T+
Sbjct: 179 RFVHELRNIYDAVLVGVGTVLKDNPMLNTRLDVAGKRDPMRVILDGRLEIPLDSQIVLTS 238

Query: 241 LLAPVIIVTENDDPVLALA-FRKKNINIIYC-DCRDLKKLLTIL--VGR-GVTSLLVEGG 295
                ++VT     +  +A      + ++   D  D   L+ +L  + R GVTS+LVEGG
Sbjct: 239 NQQCTLVVTSRKADIGKIAVLEDAGVEVLQLGDKPDFIPLVPVLEELARLGVTSILVEGG 298

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
             V  SF+ + LVD +  + +  + G    P+P+
Sbjct: 299 GQVNASFLEAGLVDKVYWFIAPKICGGESAPTPV 332


>gi|238026457|ref|YP_002910688.1| Pyrimidine reductase, riboflavin biosynthesis [Burkholderia glumae
           BGR1]
 gi|237875651|gb|ACR27984.1| Pyrimidine reductase, riboflavin biosynthesis [Burkholderia glumae
           BGR1]
          Length = 372

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/329 (37%), Positives = 176/329 (53%), Gaps = 15/329 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  S   +  T+ NP V C+IVKDG+VIG G T   G  HAEVQA+++A
Sbjct: 3   SDTDFAHMQRALDLSSRGMYTTTPNPRVGCVIVKDGVVIGEGYTQPAGQDHAEVQAMKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G + RGAT YVTLEPCSH+GR+PPCAQ +I+  + RV+  ++DP+  VSGRGL  L 
Sbjct: 63  RSRGHDLRGATVYVTLEPCSHFGRTPPCAQGLIDARVARVIAAMEDPNPAVSGRGLAMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++  E       +++R    R  + +KIA S D    +    S  ITG  +
Sbjct: 123 DAGIEVRCGLLAQEAHEMNIGFVSRMTRGRPWLRMKIAASLDGRTALPTGESQWITGEAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H  RA++ AIL GIGTVL DDP LT R +      P+R+++D    L LD+K++  
Sbjct: 183 RRDGHAWRARACAILTGIGTVLEDDPRLTVR-DIDTPRQPLRVLVDSRLDLPLDAKLLAG 241

Query: 240 ALLAPVIIVTENDD---PVLALAFRKKNINII-YCDCR---DLKKLLTILVGRGVTSLLV 292
              AP+++     D      A A R +   +I   D     DL  +L  L   G+  L V
Sbjct: 242 ---APILVFCGRLDAASEARAAALRDRGAEVIPLADANGKVDLPAMLAALGRHGINELHV 298

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           E G  +  S +    VD +++Y +  ++G
Sbjct: 299 EAGHKLNGSLLREGCVDELLVYLAPTLLG 327


>gi|206578559|ref|YP_002240118.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae 342]
 gi|206567617|gb|ACI09393.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae 342]
          Length = 367

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 189/366 (51%), Gaps = 26/366 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ +      T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEMYMARALKLATRGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AQGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R       + LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMNEAEALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R   L   +           P+R+++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPEH 242

Query: 235 KIIKTA--LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLL 291
           +I++ A   L   +   E   P        + + +   +      LL +L+G+  V S+ 
Sbjct: 243 RIVQQAGETLFARLRADERQWPESV-----RTLLVPEYNGHLDLVLLMMLLGKQQVNSVW 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-----GIPSPLEEGYLEKNFMCVRRDYF 346
           VE GA +A + + + LVD +I+Y +  ++G        +P  LEE     +F        
Sbjct: 298 VEAGATLAGALLQAGLVDELIVYIAPKLLGNAARGLCALPG-LEELSQAPHFKFNEIRQV 356

Query: 347 GSDVCL 352
           G DVCL
Sbjct: 357 GPDVCL 362


>gi|119384301|ref|YP_915357.1| riboflavin biosynthesis protein RibD [Paracoccus denitrificans
           PD1222]
 gi|119374068|gb|ABL69661.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Paracoccus denitrificans PD1222]
          Length = 325

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/350 (35%), Positives = 178/350 (50%), Gaps = 32/350 (9%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  +R  +G    NP+V C++V+DG+V+GRG T  GG PHAE  AL +AGE ARGA
Sbjct: 1   MRHALALARRGLGNVWPNPAVGCVLVRDGVVVGRGWTQPGGRPHAEAMALAQAGEAARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPC+H+G++PPCA+ ++  G+ RVV  + DPD RV+GRG   L   GI + + +
Sbjct: 61  TAYVTLEPCAHHGKTPPCAEALVRSGMARVVTALTDPDPRVTGRGHAILRAAGIEVAEGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            E+E +     +L+R    R  +TLK+A S D  I  A   S  ITG  ++  VH LR  
Sbjct: 121 CEAEAREVQRGFLSRIQRGRPMLTLKLAASFDGRIATASGESQWITGAQARRHVHALRLG 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DA++VG  T  AD P L  R  G     P+RI++       L  +              
Sbjct: 181 HDAVMVGAETARADRPGLNVRGFG-PVRQPVRIVVSSRRLPDLPGE-------------G 226

Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
               P+  +A              + +  +  L  RG+T +L EGG  +A S + + +VD
Sbjct: 227 PEHGPLWQVAG-------------EPEAFMAELGTRGLTRVLCEGGGVLAASLLRAGMVD 273

Query: 310 SIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
            +I Y + +V+G  G        LE       F  V     GSD+   ++
Sbjct: 274 QLIGYGAGVVLGGDGRAGIGALELEHLADAPRFRLVETRRIGSDIMHRWL 323


>gi|288936867|ref|YP_003440926.1| riboflavin biosynthesis protein RibD [Klebsiella variicola At-22]
 gi|290510077|ref|ZP_06549447.1| riboflavin biosynthesis protein RibD [Klebsiella sp. 1_1_55]
 gi|288891576|gb|ADC59894.1| riboflavin biosynthesis protein RibD [Klebsiella variicola At-22]
 gi|289776793|gb|EFD84791.1| riboflavin biosynthesis protein RibD [Klebsiella sp. 1_1_55]
          Length = 367

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 189/366 (51%), Gaps = 26/366 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ +      T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEMYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AQGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R       + LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMNEAEALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R   L   +           P+R+++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPEH 242

Query: 235 KIIKTA--LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLL 291
           +I++ A   L   +   E   P        + + +   +      LL +L+G+  V S+ 
Sbjct: 243 RIVQQAGETLFARLRADERQWPESV-----RTLLVPEYNGHLDLVLLMMLLGKQQVNSVW 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-----GIPSPLEEGYLEKNFMCVRRDYF 346
           VE GA +A + + + LVD +I+Y +  ++G        +P  LEE     +F        
Sbjct: 298 VEAGATLAGALLQAGLVDELIVYIAPKLLGNAARGLCALPG-LEELSQAPHFKFNEIRQV 356

Query: 347 GSDVCL 352
           G DVCL
Sbjct: 357 GPDVCL 362


>gi|260772212|ref|ZP_05881128.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio metschnikovii CIP 69.14]
 gi|260611351|gb|EEX36554.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio metschnikovii CIP 69.14]
          Length = 369

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 115/333 (34%), Positives = 180/333 (54%), Gaps = 21/333 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D + M+ A++ ++     T+ NP V C+I + G ++G G     G PHAEV AL  A
Sbjct: 6   SAVDYQMMARAIQLAQRGRFTTAPNPKVGCVITQQGRIVGEGFHYRAGQPHAEVHALRMA 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            E ARGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +VSGRG+  L + G
Sbjct: 66  KEYARGATAYVTLEPCSHYGRTPPCAEGLIQAGVAKVICAMQDPNPQVSGRGIAMLREAG 125

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V+  ++E++ K+   A++ R      ++ LK+A S D    +A   S  IT   ++  
Sbjct: 126 IEVEVGLLEADAKVLNPAFIKRMQTGMPYVQLKLAASLDGQTALANGESQWITSAQARQD 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----QEH------SPMRIILDPHFKLS 231
           V + RAQ+ A+L    TV+AD+  L  R + L     Q++       P R+ILD   +L 
Sbjct: 186 VQVYRAQAGAVLSTSQTVIADNASLAVRWSELPADVQQQYPHAELRQPTRVILDRQHQLH 245

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
               +  T   +P+I V E D  +       + +     D RD   L ++     +  L 
Sbjct: 246 QSLALYATT--SPIIRVAEQDAELCVPLNEHQQL-----DLRD--TLASLAEQYQINHLW 296

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           VE G  +A S +  +LVD +I+Y +  ++G  G
Sbjct: 297 VEAGPTLAKSLLEQQLVDELIIYLAPKIMGSDG 329


>gi|198282613|ref|YP_002218934.1| riboflavin biosynthesis protein RibD [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|198247134|gb|ACH82727.1| riboflavin biosynthesis protein RibD [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 357

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/317 (38%), Positives = 177/317 (55%), Gaps = 8/317 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           MS AL  +   +     NP V  ++VKDG VIGRG     G PHAEV AL+EAG  ARGA
Sbjct: 1   MSEALVLAEQGLYSAHPNPCVGAVLVKDGRVIGRGAHLQAGEPHAEVLALKEAGAAARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
           TAYVTLEPCSHYGR+PPCA  +I  GI RVV+ + DP+  V+GRG++ L   G++ +   
Sbjct: 61  TAYVTLEPCSHYGRTPPCADALIAAGIARVVIAMRDPNPLVAGRGVERLRAAGVVAEEGC 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E+  +     +L R    R  + LK A+S D  + +A   S  +TG  ++  V   RA+
Sbjct: 121 LEAAAEALNPGFLRRMRHGRPWLRLKQAMSLDGRVALANGRSQWLTGEAARADVQQERAR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           + AILVGIGTVLAD+P L  RL       P+++I+D H +   D+ +  T     V I  
Sbjct: 181 ASAILVGIGTVLADNPRLAPRLEAPLRRYPVKVIMDSHLRTPPDAALFGTP--GAVWIFH 238

Query: 250 ENDDPV-LALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
             D PV    A       +++C       D ++++ +L  R +  +LVE G  VA S   
Sbjct: 239 GQDAPVAARAALCAAGAELLFCRGTVQGLDWQEVMGMLAERQINEVLVEAGPGVAASLFA 298

Query: 305 SRLVDSIILYRSQIVIG 321
           + L+D  +LY + +++G
Sbjct: 299 AGLIDEWLLYVAPLLLG 315


>gi|152968939|ref|YP_001334048.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150953788|gb|ABR75818.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 367

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 189/366 (51%), Gaps = 26/366 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ +      T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEMYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  ARGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIEV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R       + LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMNEAEALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R   L   +           P+R+++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPEH 242

Query: 235 KIIKTA--LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLL 291
           +I++ A   L   +       P  A     + + +   +      LL +L+G+  + S+ 
Sbjct: 243 RIVQQAGETLFARLRADARQWPESA-----RTLLVPEHNGHLDLVLLMMLLGKQQINSVW 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-----GIPSPLEEGYLEKNFMCVRRDYF 346
           VE GA +A + + + LVD +I+Y +  ++G        +P  LEE     +F        
Sbjct: 298 VEAGATLAGALLQAGLVDELIVYIAPKLLGNTARGLCALPG-LEELSQAPHFKFNEIRQV 356

Query: 347 GSDVCL 352
           G DVCL
Sbjct: 357 GPDVCL 362


>gi|282857766|ref|ZP_06266975.1| riboflavin biosynthesis protein RibD [Pyramidobacter piscolens
           W5455]
 gi|282584436|gb|EFB89795.1| riboflavin biosynthesis protein RibD [Pyramidobacter piscolens
           W5455]
          Length = 364

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/323 (38%), Positives = 173/323 (53%), Gaps = 16/323 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D   M  AL  +   +G T+ NP V C+IVKDG V+GRG   + G  HAE  AL +AG++
Sbjct: 7   DEHHMRQALDLALRGLGKTTPNPMVGCVIVKDGEVVGRGWHDHLGGLHAEAAALRDAGDK 66

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGAT YVTLEPCSH GR PPCA  +++ G+ R V  V DP+ +VSGRGL+ LS  G+  
Sbjct: 67  ARGATVYVTLEPCSHQGRQPPCAPALVKSGVTRCVCAVGDPNPKVSGRGLKILSDAGVET 126

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++E E       + + Q  +R  +TLK A+S D  + +A   S  ITG  ++ + H 
Sbjct: 127 VCGVLEKEASWLNRGFFSLQTRRRPWVTLKAALSLDGSMALADGTSRWITGEAARAESHR 186

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK---TALL 242
           LR ++DAIL+G GT+  DDP LT R   ++  SP  +IL        D+ ++K    AL 
Sbjct: 187 LRGENDAILIGSGTLRHDDPALTVR--AVEGPSPRPVIL------CSDAAVLKGNYKALR 238

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAH 300
              I+       V     R   +  +       DLK  L  L   G+  +LVE G  +  
Sbjct: 239 RDAIVFVPEGTAVPP--ERSGRVYAVSSSAGRPDLKAALEKLAELGLARVLVEAGPTICS 296

Query: 301 SFINSRLVDSIILYRSQIVIGEG 323
           +FI + L D   L+ + +  GEG
Sbjct: 297 AFIAAGLADEYQLFVAPVFTGEG 319


>gi|15642269|ref|NP_231902.1| riboflavin-specific deaminase [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121586201|ref|ZP_01675992.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 2740-80]
 gi|153820478|ref|ZP_01973145.1| riboflavin biosynthesis protein RibD [Vibrio cholerae NCTC 8457]
 gi|153823263|ref|ZP_01975930.1| riboflavin biosynthesis protein RibD [Vibrio cholerae B33]
 gi|227082395|ref|YP_002810946.1| riboflavin biosynthesis protein RibD [Vibrio cholerae M66-2]
 gi|229507656|ref|ZP_04397161.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae BX 330286]
 gi|229512149|ref|ZP_04401628.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae B33]
 gi|229519284|ref|ZP_04408727.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae RC9]
 gi|229607160|ref|YP_002877808.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae MJ-1236]
 gi|254849400|ref|ZP_05238750.1| riboflavin-specific deaminase [Vibrio cholerae MO10]
 gi|298500355|ref|ZP_07010160.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MAK 757]
 gi|9656833|gb|AAF95415.1| riboflavin-specific deaminase [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121549613|gb|EAX59637.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 2740-80]
 gi|126508979|gb|EAZ71573.1| riboflavin biosynthesis protein RibD [Vibrio cholerae NCTC 8457]
 gi|126519224|gb|EAZ76447.1| riboflavin biosynthesis protein RibD [Vibrio cholerae B33]
 gi|227010283|gb|ACP06495.1| riboflavin biosynthesis protein RibD [Vibrio cholerae M66-2]
 gi|229343973|gb|EEO08948.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae RC9]
 gi|229352114|gb|EEO17055.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae B33]
 gi|229355161|gb|EEO20082.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae BX 330286]
 gi|229369815|gb|ACQ60238.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae MJ-1236]
 gi|254845105|gb|EET23519.1| riboflavin-specific deaminase [Vibrio cholerae MO10]
 gi|297541048|gb|EFH77102.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MAK 757]
          Length = 367

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 119/339 (35%), Positives = 178/339 (52%), Gaps = 27/339 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +AGE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+G+G+Q L
Sbjct: 61  MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120

Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI V+  ++E++ ++    +L R       + LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLEADARVLNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R   L               P+R+ILD  
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-- 285
            +L             P + + +   PVL +A     + I   + +   + L  L+ +  
Sbjct: 241 HQLH------------PELALYQTPSPVLRVASENAELCISAENGKLDLRELLALLAQQH 288

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            V  L VE G+ +A S I  +LVD IILY +  ++G  G
Sbjct: 289 NVNQLWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDG 327


>gi|226951731|ref|ZP_03822195.1| riboflavin biosynthesis protein RibD [Acinetobacter sp. ATCC 27244]
 gi|226837521|gb|EEH69904.1| riboflavin biosynthesis protein RibD [Acinetobacter sp. ATCC 27244]
          Length = 366

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 125/358 (34%), Positives = 194/358 (54%), Gaps = 24/358 (6%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  A+  +R     T  NP+V C+IVKDG ++G G     G PHAEV AL +AGE A+ 
Sbjct: 15  WMQRAIDLARLGQYSTKPNPNVGCVIVKDGKILGEGFHPKAGQPHAEVFALRQAGENAKD 74

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           ATAYVTLEPC+HYGR+PPCA+ +++  +++VV+   DP+  V+G+G++ L   GI V+  
Sbjct: 75  ATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVIACSDPNPLVAGKGVKILLDAGIEVETG 134

Query: 130 MESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + +E  K     +L        ++ LK+A S D    MA   S  ITG I++  V   RA
Sbjct: 135 VCTEIAKGLNLGFLKAMSAGLPYVRLKVASSLDGRTAMASGESKWITGAIARQDVQHWRA 194

Query: 189 QSDAILVGIGTVLADDPELTCR-LNGLQEHS---PMRIILDPHFKLSLDSKIIKTALLAP 244
            S A++ GI TVLADD EL  R L G+   +   P RIILD   +L L +KI+       
Sbjct: 195 ISGAVITGIQTVLADDCELNVRELEGVNLSTVVQPKRIILDRQGQLPLTAKIL------- 247

Query: 245 VIIVTENDDPVLALA-FRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAH 300
                +N + V+ +  FR++  ++ +I    + L +LL  L  +  +  +LVE GA ++ 
Sbjct: 248 -----QNPETVMVMTPFRQELADLGVIQLSLQPLNQLLQTLSQQYQIYDVLVEAGATLST 302

Query: 301 SFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           +F+   LVD +I Y +  ++G+       +   +   ++ F  V     G D+ L  +
Sbjct: 303 AFLQQGLVDEMISYVAPTLLGQSARAMFNAEFSKMAEQRRFELVDVTQLGQDIRLRLL 360


>gi|320197148|gb|EFW71765.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-5-phosphoribosylaminouracil
           reductase [Escherichia coli WV_060327]
          Length = 367

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 131/367 (35%), Positives = 189/367 (51%), Gaps = 20/367 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           +I++             DD        +  +   +    DL  L+  L  + + S+ VE 
Sbjct: 243 RIVQQP--GETWFARTQDDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349
           G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      + G D
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPG-LEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|50083525|ref|YP_045035.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Acinetobacter sp. ADP1]
 gi|49529501|emb|CAG67213.1| bifunctional protein [Includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (Riboflavin-specific deaminase);
           5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
           reductase) ] [Acinetobacter sp. ADP1]
          Length = 362

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 122/324 (37%), Positives = 181/324 (55%), Gaps = 20/324 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +MS AL  ++     T  NP+V C+IVKD  ++GRG TA  G PHAEV AL EAG +
Sbjct: 7   DHYWMSQALALAKTAQFRTRPNPAVGCVIVKDQHIVGRGSTAPVGGPHAEVFALREAGVQ 66

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+ ATAYVTLEPCSHYGR+PPCA  +IE G+ RVV+   DP+  V+G+G   L+Q GI  
Sbjct: 67  AQNATAYVTLEPCSHYGRTPPCANALIEAGVSRVVIATLDPNPLVAGKGQTMLNQAGITT 126

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E + +     +L        ++ LK+A S D    MA   S  ITG  ++  V  
Sbjct: 127 QVGVLEEQAQELNRGFLKVMAGGLPYVRLKVASSLDGRTAMASGESKWITGVDARLDVQY 186

Query: 186 LRAQSDAILVGIGTVLADDPELTCR----LNGLQE-HSPMRIILDPHFKLSLDSKIIKTA 240
            RA+S AI+ G+ TVLADD +L  R    ++ L E   P RIILD   +L L +K+++  
Sbjct: 187 WRARSGAIITGVDTVLADDCQLNVRALPDVDDLSEIVQPKRIILDRQGRLPLTAKLLQH- 245

Query: 241 LLAPVIIVTENDDPVLALAFRKK--NINIIYCDCRDLKKLLT-ILVGRGVTSLLVEGGAA 297
              P  +V           FR++  ++ ++      L++LL  I     +  +++E GA 
Sbjct: 246 ---PETVVVMG-------PFRQELADLGVVQFPVLPLQQLLEHIAKEHHIYDVMIEAGAT 295

Query: 298 VAHSFINSRLVDSIILYRSQIVIG 321
           ++ +F+   LVD +I Y +  ++G
Sbjct: 296 LSTAFLQEDLVDEVISYVAPTLLG 319


>gi|172058721|ref|YP_001815181.1| riboflavin biosynthesis protein RibD [Exiguobacterium sibiricum
           255-15]
 gi|171991242|gb|ACB62164.1| riboflavin biosynthesis protein RibD [Exiguobacterium sibiricum
           255-15]
          Length = 348

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 125/358 (34%), Positives = 190/358 (53%), Gaps = 19/358 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A++ +R   G TS NPSV C+I K G V G G   + G PHAEV+AL  AGE ARGA
Sbjct: 5   MHQAMQLARMLDGQTSPNPSVGCVITKHGKVFGFGAHRFAGGPHAEVEALNMAGEAARGA 64

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129
             YVTLEPC+H+G++PPC + I+  GI+RV V  +D    V+G+G++ L   G+ V+  +
Sbjct: 65  DLYVTLEPCNHHGKTPPCTEAILAAGIKRVFVATEDRHAIVAGQGIKRLRDAGLTVEVGL 124

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP-ITGFISKNQVHLLRA 188
           +E E   F   +       R ++T+K+A S   + G+   G    IT   ++     LRA
Sbjct: 125 LEDEAVRFYTPFWQSLKRNRPNVTVKVAQS---LNGIVTTGEQRFITSLAAREAGRELRA 181

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
             DAILVG  TVL DDP LT R     E  P+RI++D   +L   ++I +  L     + 
Sbjct: 182 THDAILVGSETVLVDDPALTLRTEAGPE--PIRIVVDRRGRLPETAQIFRDGLNTTYWL- 238

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
              + P ++    + N+  +       +++L  L  +G+ S+L+EGG  +  +F+ + LV
Sbjct: 239 --TEQPRVSA---QSNVTALVGTYATPEQILETLYAQGIHSVLIEGGPTIQSAFLEADLV 293

Query: 309 DSIILYRSQIVI-GEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI--GKNLCLQE 363
           D + +Y++  V+ G  G+ S +E   +E  F        G DV L Y   G   C Q+
Sbjct: 294 DRLEVYQAPSVLKGMPGLASAVE---IEDRFDLTAVAPIGQDVHLRYARKGDGSCSQD 348


>gi|121729759|ref|ZP_01682198.1| riboflavin biosynthesis protein RibD [Vibrio cholerae V52]
 gi|147673692|ref|YP_001217785.1| riboflavin biosynthesis protein RibD [Vibrio cholerae O395]
 gi|121628510|gb|EAX60996.1| riboflavin biosynthesis protein RibD [Vibrio cholerae V52]
 gi|146315575|gb|ABQ20114.1| riboflavin biosynthesis protein RibD [Vibrio cholerae O395]
 gi|227014167|gb|ACP10377.1| riboflavin biosynthesis protein RibD [Vibrio cholerae O395]
          Length = 367

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 121/340 (35%), Positives = 180/340 (52%), Gaps = 29/340 (8%)

Query: 1   MPV-SSFDARFMSAALRFS-RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
           MP+ +SFD + MS A+  + R H   TS NP+V C+I +   ++G G     G PHAEV 
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGHF-TTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVH 59

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           A+ +AGE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+G+G+Q 
Sbjct: 60  AMRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQM 119

Query: 119 LSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L   GI V+  ++E++ ++    +L R       + LK+A S D    +A   S  IT  
Sbjct: 120 LRDAGIEVEVGLLEADARVLNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSP 179

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDP 226
            ++  V   RAQ+ AIL    TVLAD+  L  R   L               P+R+ILD 
Sbjct: 180 AARKDVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDR 239

Query: 227 HFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR- 285
             +L             P + + +   PVL +A     + I   + +   + L  L+ + 
Sbjct: 240 QHQLH------------PELALYQTPSPVLRVASENAELCISAENGKLDLRELLALLAQQ 287

Query: 286 -GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
             V  L VE G+ +A S I  +LVD IILY +  ++G  G
Sbjct: 288 HNVNQLWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDG 327


>gi|238787980|ref|ZP_04631776.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
           frederiksenii ATCC 33641]
 gi|238723928|gb|EEQ15572.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
           frederiksenii ATCC 33641]
          Length = 369

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 125/331 (37%), Positives = 180/331 (54%), Gaps = 22/331 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     TS NP+V C++V+DG ++G G     G PHAEV AL  AGE+
Sbjct: 4   DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 64  ARGATAYVTLEPCSHHGRTPPCADALVAAGVVRVVAAMQDPNPQVAGRGLYKLKQAGIAV 123

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
            RA+S AIL    TVLADDP LT R   L   +           P RIILD H +++ + 
Sbjct: 184 FRAESSAILSTSATVLADDPSLTVRWQELDTETQARYPQDTLRQPTRIILDSHNRVTPEH 243

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSL 290
           K+I+      +  V  ++ P  A      N+  +    + +  DL  L+  L  R + S+
Sbjct: 244 KVIQQEGTCWLARVEADEQPWPA------NVEQLLLPRHGNGVDLVLLMMQLGKRQINSV 297

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            VE G  +A + + + +VD +ILY +  ++G
Sbjct: 298 WVEAGPQLAGALLQAGVVDELILYIAPKLLG 328


>gi|262370188|ref|ZP_06063515.1| pyrimidine deaminase [Acinetobacter johnsonii SH046]
 gi|262315227|gb|EEY96267.1| pyrimidine deaminase [Acinetobacter johnsonii SH046]
          Length = 367

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 115/326 (35%), Positives = 183/326 (56%), Gaps = 22/326 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  +      T  NP+V C+IVKDG+++G G     G  HAEV A+ EAGE+
Sbjct: 12  DQAWMKQAIALALQGQYSTKPNPNVGCVIVKDGLLLGTGYHPQAGQLHAEVFAMREAGEQ 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            +GATAYVTLEPC+HYGR+PPCA+ ++E G+ RVV+   DP+  V+G+G+Q L + GI V
Sbjct: 72  TQGATAYVTLEPCAHYGRTPPCAKGLVEAGVARVVIACPDPNPLVAGKGVQILKEAGIEV 131

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  + ++E       +L        ++ LK+A S D    MA   S  ITG  ++  V  
Sbjct: 132 DVGICQTEAHQLNAGFLKAMATGMPYVRLKVASSLDGRTAMASGESKWITGPAARLDVQH 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCR-LNGLQEHS----PMRIILDPHFKLSLDSKIIKTA 240
            RA S  ++ GI TVLADDP+L  R L  + + +    P R++LD   +L L ++I+   
Sbjct: 192 FRAISGVVITGIETVLADDPQLNVRQLQSVADLTTVVQPKRLVLDRQGRLPLTAQIL--- 248

Query: 241 LLAPVIIVTENDDPVLALA-FRK--KNINIIYCDCRDLKKLLTILV-GRGVTSLLVEGGA 296
                    +  D V+ +  +R+   ++ ++    + L +LL  LV    +  ++VE GA
Sbjct: 249 ---------QQPDTVMVMGPYRQALADVGVLQFAVQPLDQLLKQLVQSHQIYDVMVEAGA 299

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGE 322
            ++ +F+  +LVD +I Y +  ++G+
Sbjct: 300 TLSTAFLQEKLVDEMISYVAPTLLGQ 325


>gi|71898908|ref|ZP_00681075.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|71731320|gb|EAO33384.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
           C-terminal [Xylella fastidiosa Ann-1]
          Length = 364

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/332 (37%), Positives = 184/332 (55%), Gaps = 17/332 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D R M  AL  +      T  NP V C+IV+DG V+G G     G PHAEV AL  A
Sbjct: 5   SADDHRHMERALCLAERGAYTTRPNPMVGCVIVRDGEVVGEGWHQRAGDPHAEVFALCAA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G+ ARGATAYVTLEPC+H GR+PPCA  +I+ G+RRVV  + DP   V+G G+  L   G
Sbjct: 65  GDLARGATAYVTLEPCAHSGRTPPCAMALIDAGVRRVVAAMVDPFPLVNGGGVTLLRAAG 124

Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + V+  +ME++ +     +L+R    R  + +K+  S D    +A   S  ITG  ++  
Sbjct: 125 VTVEHGLMEAQARALNRGFLSRVERGRPWVRIKLGSSLDGRTALASGESKWITGEAARVD 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKTA 240
           V   RA++ AIL G GTVLADDP LT RL G +     P+R++LD   + SL    ++  
Sbjct: 185 VQRWRARASAILTGAGTVLADDPALTVRLGGEEGAFLPPLRVVLDSSLR-SLSCVKVRDG 243

Query: 241 LLAPVIIVTEN--DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294
             AP + +       PVL      ++++      R    DL+ +L +L  RG+  + VE 
Sbjct: 244 -TAPTLYLHGFGVTSPVL------QHVDFSEVQQRDAGLDLEAVLRLLGERGINEVQVEA 296

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           GA +  + +++ LVD +++Y + +++G+   P
Sbjct: 297 GATLCGALLHAGLVDELLIYIAPLLLGDTARP 328


>gi|257126309|ref|YP_003164423.1| riboflavin biosynthesis protein RibD [Leptotrichia buccalis
           C-1013-b]
 gi|257050248|gb|ACV39432.1| riboflavin biosynthesis protein RibD [Leptotrichia buccalis
           C-1013-b]
          Length = 371

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 118/372 (31%), Positives = 200/372 (53%), Gaps = 24/372 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
            + D ++M  A+  ++      + NP V  ++V+ G VIG G   Y G PHAEV AL+EA
Sbjct: 3   ENIDEKYMRMAIELAKKGARAVNPNPMVGAVVVQAGKVIGTGYHKYFGGPHAEVYALDEA 62

Query: 64  GEEAR---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            + ++    AT YVTLEPCSHYG++PPCA+ I++ G++R V+   DP+ +V+G+G+Q L 
Sbjct: 63  SKNSKDLSNATIYVTLEPCSHYGKTPPCAEKIVKLGLKRCVIGSSDPNPKVAGKGVQILK 122

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI + + +++ E       +    + K  ++ LK A++ D  I      S  IT   +
Sbjct: 123 NAGIGVAENVLKEECDKLNQVFFKYILTKLPYLFLKCAITLDGKIATKTGNSKWITNEAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIK 238
           + +V   R +   I+VGI TVLAD+P LT R+ NG+   +P RII+DPH K      IIK
Sbjct: 183 REKVQFYRNKFMGIMVGINTVLADNPSLTARIENGV---NPYRIIIDPHLKTEKIHNIIK 239

Query: 239 TALLAPVIIVT--ENDDPVLALAFRKKN-INIIYCDCR--DLKKLLTILVGRGVTSLLVE 293
             +    IIVT  +N +    L F + N +  ++ +      K++L  +   G+ S+L+E
Sbjct: 240 ENIDEKTIIVTSEKNKNSEKQLDFSENNKVKFVFLNGTKFSFKEILEKIGTLGIDSILLE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGE--------GGIPSPLEEGYLEKNFMCVRRDY 345
           GG  +        ++D+  ++ +  ++G+        G     ++E  + KN   V+ + 
Sbjct: 300 GGQLLISQAFEEDVIDAGEIFIANKILGDTEGKSFIAGFDKKNMDESIILKN---VKYNI 356

Query: 346 FGSDVCLEYIGK 357
           +G +V +E++ K
Sbjct: 357 YGENVGMEFLQK 368


>gi|163815505|ref|ZP_02206878.1| hypothetical protein COPEUT_01670 [Coprococcus eutactus ATCC 27759]
 gi|158449142|gb|EDP26137.1| hypothetical protein COPEUT_01670 [Coprococcus eutactus ATCC 27759]
          Length = 382

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 120/342 (35%), Positives = 179/342 (52%), Gaps = 16/342 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
             F+  +M  A+  ++   G  + NP V  +IVK G +IG G     G  HAE  A    
Sbjct: 8   DEFNLAYMRRAIELAKKGTGAVNPNPLVGAVIVKAGRIIGEGYHVRYGELHAERAAFASL 67

Query: 64  GE--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            +  EA GA  YVTLEPC H+G+ PPC   IIE  IR+V    DDP+  V+G+G + L  
Sbjct: 68  ADPAEAEGAVMYVTLEPCCHFGKQPPCVDAIIEHKIRKVYCGSDDPNAMVAGKGFRRLRD 127

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +    ++ E       +    + K+ ++T+K A++ D  I      S  ITG  S+
Sbjct: 128 AGIEVYTHCLKDECDALNDIFFKYIIAKKPYVTMKYAMTMDGRIATHIGASKWITGEASR 187

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQE-----HSPMRIILDPHFKLSLDS 234
             V  LR +   I+ GIGTVLADDP LTCR+ NG+        +P+RII D   ++  DS
Sbjct: 188 AYVMELRNRHKGIMAGIGTVLADDPMLTCRIENGIDRDTDNVRNPIRIICDSKLRIPEDS 247

Query: 235 KIIKTALLAPVIIVTEND---DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGV 287
            I++TA+    I+ T  D   D       R+K+++II  D      DL +L+ IL G+G+
Sbjct: 248 NIVQTAVEIETIVATTPDGAADTAKCDRLREKSVSIIETDSTDGNVDLGQLMDILGGKGI 307

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
             +L+EGG  + +S ++  LVD   ++ +  + G  G  SP+
Sbjct: 308 DGILLEGGGELNYSMVSEGLVDEACVFIAPKIFGGEGKYSPV 349


>gi|170078074|ref|YP_001734712.1| riboflavin biosynthesis protein RibD [Synechococcus sp. PCC 7002]
 gi|169885743|gb|ACA99456.1| riboflavin biosynthesis protein RibD [Synechococcus sp. PCC 7002]
          Length = 371

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 110/327 (33%), Positives = 180/327 (55%), Gaps = 3/327 (0%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           + FD   M   +  ++   G T+ NP V  ++V+D  +IG G     G PHAEV AL EA
Sbjct: 10  TDFDRAMMQRCITLAKQAAGKTAPNPMVGAVVVQDQKIIGEGFHPGAGQPHAEVFALREA 69

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G  A+GAT YV+LEPC+H+GR+PPC+Q +++ GI +VVV + DP+  V+G GL+ L+  G
Sbjct: 70  GAAAQGATLYVSLEPCNHHGRTPPCSQAVVKAGISKVVVGMVDPNPLVAGGGLKTLTDAG 129

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +V  + E+  +     ++ R V +R    LK A++ D  I      S  IT   ++NQ
Sbjct: 130 IEVVTGVEEAACRALNAGFVWRMVHQRPLGILKYAMTLDGKIATTTGHSAWITHQETRNQ 189

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           V+ LR+Q DA++VG  TV  DDP LT   +G  +H+P+RI++     L  D  +      
Sbjct: 190 VYDLRSQCDAVVVGGNTVRLDDPYLTT--HGTADHNPLRIVVSQTLTLPRDRHLWDVTAA 247

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             V++     +P +    R++ + +++ D    + ++  L  RG   +L E G  +A + 
Sbjct: 248 PTVVLTQATANPEMQAFLRQQGVEVVHLDPVSPEGVMQYLYDRGCLQVLWECGGTLAAAA 307

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPL 329
           I S  +  ++ + +  +IG  G P+P+
Sbjct: 308 IASGSIQKVMAFIAPKIIGGQGAPTPV 334


>gi|218698677|ref|YP_002406306.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli IAI39]
 gi|218368663|emb|CAR16402.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli IAI39]
          Length = 367

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 131/367 (35%), Positives = 189/367 (51%), Gaps = 20/367 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           +I++             DD        +  +   +    DL  L+  L  + + S+ VE 
Sbjct: 243 RIVQQP--GETWFARTQDDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349
           G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      + G D
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCSLPG-LEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|303249744|ref|ZP_07335948.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307251932|ref|ZP_07533833.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302651311|gb|EFL81463.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860624|gb|EFM92636.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 364

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 119/363 (32%), Positives = 195/363 (53%), Gaps = 20/363 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++  +G T+ NP V C+IVK+G ++  G     G  HAE  A+    E+
Sbjct: 3   DLDYMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLHCKED 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GATAYVTLEPC H+GR+PPC+  +IE GI++V +   DP+  V+GRG   L Q G+ +
Sbjct: 63  LSGATAYVTLEPCCHHGRTPPCSNLLIERGIKKVFIGSSDPNPLVAGRGANQLRQAGVEV 122

Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           V+ +++ E      IF H   T    K  ++ +K A++ D  I      S  ITG  ++ 
Sbjct: 123 VEGLLKEECDALNPIFFHYIQT----KCPYVLMKYAMTADGKIATGSGESKWITGESARA 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +V   R Q  AI+VG+ TVLAD+P L  R+   ++  P+RI+ D   +  LD ++++TA 
Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQ--PVRIVCDSQLRTPLDCQLVQTAK 236

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
               +I T  DD      FR   + ++ C  R    DL+ LL  L    + SLL+EGG++
Sbjct: 237 EYRTVIATVCDDLQKVEQFRPLGVEVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352
           ++ S + S +V+ +  Y +  ++G     +P+    +++    V+      +  G D+ L
Sbjct: 297 LSFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356

Query: 353 EYI 355
           +Y+
Sbjct: 357 DYV 359


>gi|224370210|ref|YP_002604374.1| RibD [Desulfobacterium autotrophicum HRM2]
 gi|223692927|gb|ACN16210.1| RibD [Desulfobacterium autotrophicum HRM2]
          Length = 381

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 116/328 (35%), Positives = 181/328 (55%), Gaps = 14/328 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  A+  +    G T+ NP V  ++VK+  V+G+G     G  HAEV A+++AG+ ARG
Sbjct: 20  FMEQAICLAEQGRGYTAPNPMVGAVVVKNNQVVGQGWHKGPGLAHAEVNAIDDAGDLARG 79

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-- 127
           +  YVTLEPC+H GR+PPC + I+  GIRRV V  +DP+  V+G G+++L ++G+ V   
Sbjct: 80  SDLYVTLEPCNHTGRTPPCTEKILRAGIRRVFVGTEDPNPFVAGGGIKFLKERGVAVKVG 139

Query: 128 ---RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
              R  E+  + F+  Y+    +K+  + LK A + D  +      S  IT   S+  VH
Sbjct: 140 ICRRASETLIEDFIW-YVKN--DKQPFVVLKCAATLDGQLATRTGDSKWITNEASRKYVH 196

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR   DAI+VG GT+ AD+P LT R+       P+R+ILD    +  DS++      A 
Sbjct: 197 RLRHWVDAIVVGAGTIRADNPSLTTRIENFDGRDPLRVILDAQLSIDPDSQVFTQQSSAK 256

Query: 245 VII-VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299
            ++ ++   DP     F+ + I ++    +    DL  L   L  RGV SLL+EGG  V 
Sbjct: 257 TMVAISRRADPERCALFKHRGIELLVLPEKEGIIDLACLGEALGQRGVVSLLIEGGGRVV 316

Query: 300 HSFINSRLVDSIILYRS-QIVIGEGGIP 326
           HS + + +V+ I L+ + +++ G  G+P
Sbjct: 317 HSALAAGVVNKIYLFFAPKLLGGNDGVP 344


>gi|300865185|ref|ZP_07110005.1| riboflavin biosynthesis protein [Oscillatoria sp. PCC 6506]
 gi|300336816|emb|CBN55155.1| riboflavin biosynthesis protein [Oscillatoria sp. PCC 6506]
          Length = 388

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 115/329 (34%), Positives = 177/329 (53%), Gaps = 3/329 (0%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P   FDA  M   +  +R  +G T+ NP V   IV+DG+V+G G     G PHAEV AL 
Sbjct: 26  PRQDFDAAMMRRCIELARCALGKTAPNPLVGSAIVRDGLVVGEGFHPGAGMPHAEVFALR 85

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           EAGE+A GAT YV LEPC+HYGR+PPC++ +I  G+ +VVV + DP+  VSG G+  L +
Sbjct: 86  EAGEKALGATVYVNLEPCNHYGRTPPCSEALIAAGVAKVVVGMVDPNPLVSGGGIARLRE 145

Query: 122 KGIIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI V   +E E  +    A++ R + +R    LK A++ D  I  +   S  +TG  ++
Sbjct: 146 AGIEVVVGVEEEACRKLNEAFIHRILYRRPFGILKYAMTLDGKIATSSGHSAWVTGEEAR 205

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
           +QVH LR   DA++VG  TV  D+P+LT    G   H+P+R+++     L   S++ +T 
Sbjct: 206 SQVHGLRIACDAVIVGGNTVRLDNPQLTSHQEG--RHNPLRVVMSRTLDLPKSSRLWETG 263

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
             + +++  E  +P        + + ++          +  L  R   S+L E G  +A 
Sbjct: 264 DASTLVLTQEGTNPEFREFLGSRGVEVVDLSPLTPASAMAYLYDRSFLSVLWECGGILAA 323

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPL 329
           S I    V  I+ + +  ++G  G PSP+
Sbjct: 324 SAIADGSVQKILAFIAPKIVGGQGSPSPV 352


>gi|189424808|ref|YP_001951985.1| riboflavin biosynthesis protein RibD [Geobacter lovleyi SZ]
 gi|189421067|gb|ACD95465.1| riboflavin biosynthesis protein RibD [Geobacter lovleyi SZ]
          Length = 367

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 117/333 (35%), Positives = 186/333 (55%), Gaps = 7/333 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S+ D  +M  A+  +R  +G T+ NP+V C+IV DG+++G G     G PHAEV AL  
Sbjct: 1   MSTSDIAYMKRAISLARKGLGRTAPNPAVGCVIVCDGVIVGEGWHKKAGTPHAEVHALAM 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  A+GA  YVTLEPC H+G++PPC   +I  G+RRVV  + DP ++V+G+GLQ L Q 
Sbjct: 61  AGAAAKGADVYVTLEPCCHHGKTPPCCDALIAAGVRRVVAGMVDPFLQVAGKGLQTLRQA 120

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ V+  ++E + K     ++        ++  K A++ D  I      S  +TG  S+ 
Sbjct: 121 GVRVEVGLLEQQCKELNKGFIKSVTTGMPYLLYKTAMTMDGNIATVTGHSRWVTGEESRR 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH LRA  DA++VG+ TV+AD+P+LT R   ++   P+R+I+D   +      ++    
Sbjct: 181 LVHRLRAHCDAVMVGVDTVIADNPQLTVR--HVRGRDPLRVIVDTRLRTPESVNVLNGTD 238

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC---DCR-DLKKLLTILVGRGVTSLLVEGGAA 297
               +I T   +P +   +  +  +I+ C   D R ++  LL  L  RGV S+LVEGG+ 
Sbjct: 239 AGRTVIATCETNPDIHQRYLSQGADILVCREYDGRVEMTDLLRKLAVRGVQSILVEGGSR 298

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           +A   +   L+D  I + +  V+G G  P  ++
Sbjct: 299 LAGDLLQRNLIDECIFFYAPKVVGNGFAPFAIQ 331


>gi|328472537|gb|EGF43400.1| riboflavin-specific deaminase [Vibrio parahaemolyticus 10329]
          Length = 374

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 123/335 (36%), Positives = 176/335 (52%), Gaps = 22/335 (6%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P S  D   MS AL+ +R  +  T+ NP+V C+IV+DG++IG G     G PHAEV A+ 
Sbjct: 9   PFSPQDFSMMSRALKLARRGIYTTAPNPNVGCVIVRDGVIIGEGYHHRAGEPHAEVHAMR 68

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG++A GATAYVTLEPCSHYGR+PPCA+ +I+  + RVV  ++DP+ +V+GRG+Q L +
Sbjct: 69  MAGDKAEGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMEDPNPKVAGRGIQMLRE 128

Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            G+ V   ++E++       ++         I LK+A S D    ++   S  IT   ++
Sbjct: 129 AGVEVQVGLLENDAIELNRGFIKFMQTGMPFIQLKMAASLDGQSALSNGKSQWITSPQAR 188

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----QEH-------SPMRIILDPHFK 229
             V   RAQS  IL    TV+ D+  L  R + L    Q H        P R+ILD   K
Sbjct: 189 QDVQCYRAQSGGILSTSKTVMDDNASLNVRWDDLPQSVQAHYELTEVRQPARVILDRQQK 248

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
           LS D K+  T      IIV+   D    L    K I++          L  +     +  
Sbjct: 249 LSDDLKLFSTE--GERIIVSSEGDVCPQLDQSGK-IDLAAT-------LKAVATQHNINH 298

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           L VE GA +A S I + LVD +I+Y +  ++G  G
Sbjct: 299 LWVEAGATLASSLIKANLVDELIVYLAPKLMGSDG 333


>gi|289663675|ref|ZP_06485256.1| riboflavin biosynthesis protein RibD [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 369

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 119/328 (36%), Positives = 181/328 (55%), Gaps = 8/328 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S+ D R+M+ ALR +      T  NP V C+IV+DG+ +G G     G PHAEV AL  
Sbjct: 8   ASADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRA 67

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPC+HYGR+PPCA  +I+ G+ RVV  + DP  +V+G G   L   
Sbjct: 68  AGELARGATAYVTLEPCAHYGRTPPCALALIDAGVTRVVAAMADPFPQVNGGGFALLRDA 127

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI ++  +M ++ +     +L+R       + +K+  S D    +A   S  ITG  ++ 
Sbjct: 128 GIEVLSGVMHAQARTLNRGFLSRVERGWPWVRIKLGASLDGRTALASGQSKWITGADARA 187

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-PMRIILDPHFKLSLDSKIIKTA 240
            V   RA++ AIL G GTVLAD+P +T RL      + P+R++LD   + +L    I+  
Sbjct: 188 DVQRWRARACAILTGAGTVLADNPSMTVRLGDDTAFAPPLRVVLDSGLR-TLACANIRDG 246

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAV 298
             AP + +  + D V A A        +       DL  +L +L  RG+  + VE GA +
Sbjct: 247 -DAPTLYL--HGDAVAATALNGAEFAALPLSAGRFDLAAVLALLAKRGINEVHVEAGATL 303

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP 326
           + + + + LVD +++Y + +++G+   P
Sbjct: 304 SGALLQAGLVDELLIYMAPVLLGDTARP 331


>gi|166366741|ref|YP_001659014.1| riboflavin biosynthesis protein [Microcystis aeruginosa NIES-843]
 gi|166089114|dbj|BAG03822.1| riboflavin biosynthesis protein [Microcystis aeruginosa NIES-843]
          Length = 365

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 125/359 (34%), Positives = 187/359 (52%), Gaps = 14/359 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           + FD   M   L  +R  +G TS NP V  +IV++G +IG G     G PHAEV AL +A
Sbjct: 5   TEFDRTMMQRCLTLARQALGRTSPNPLVGAVIVQEGTIIGEGFHPGAGQPHAEVFALRQA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            E+ARGAT YV LEPC+HYGR+PPC++ I++ GI++VVV + DP+  V+G+G+Q L   G
Sbjct: 65  AEKARGATLYVNLEPCNHYGRTPPCSEAIVQAGIKKVVVGMIDPNPLVAGKGIQRLESAG 124

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I  +  + ESE       ++ R   K+    LK A++ D  I      S  IT   S+  
Sbjct: 125 IETLVGVEESECLQLNQGFIHRITAKKPFGILKYAMTLDGKIAATSGHSTWITSPASRQI 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LR+  DAI+VG  TV  D+P LT   +GL +H+P+R+++     L   + +  T+  
Sbjct: 185 VHQLRSACDAIIVGGSTVRQDNPHLTT--HGLSDHNPLRVVMTRSLDLPSSAHLWDTSQF 242

Query: 243 APVIIVTENDDPV-LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            P ++ T+ D  V L      K + +I         ++  L  RG   +L E G  ++ +
Sbjct: 243 -PTLLYTQIDSNVKLQQQLLTKGVEVIELTEVTPTLVMENLYQRGFCQVLWECGGGLSAA 301

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC-------VRRDYFGSDVCLE 353
            I   +V  II + +  +I  GGI +P   G L    M        V  +Y   D+ +E
Sbjct: 302 AIAEGMVQKIIAFIAPKII--GGIQAPTAVGDLGFQLMSQALQLKNVTVNYLNPDILIE 358


>gi|75907679|ref|YP_321975.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Anabaena variabilis ATCC 29413]
 gi|75701404|gb|ABA21080.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Anabaena variabilis ATCC 29413]
          Length = 396

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 124/359 (34%), Positives = 191/359 (53%), Gaps = 14/359 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           + FD R M   L  +R  +G TS NP V  ++VKDG ++G G     G PHAEV AL  A
Sbjct: 35  NDFDVRMMQRCLELARRALGRTSPNPLVGAVVVKDGEIVGEGFHPRAGEPHAEVFALRAA 94

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGAT YV LEPC+HYGR+PPC++ +I  G+ +VVV + DP+  V G G++ L   G
Sbjct: 95  GELARGATVYVNLEPCNHYGRTPPCSEGLIAAGVAKVVVGMVDPNPLVGGGGIERLRGAG 154

Query: 124 IIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + V   +E    +     ++ R + K+    LK A++ D  I      S  +T   ++ +
Sbjct: 155 VEVLVGVEMAACQQLNEGFVHRILHKKPLGILKYAMTLDGKIATVSGHSAWVTNPSARGE 214

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LRA  DA++VG  TV  D+P LT    G+  H+P+R+++     L +D+ + +TA  
Sbjct: 215 VHQLRAACDAVIVGGNTVRRDNPYLTSHQEGV--HNPLRVVMSRQLDLPVDAHLWETA-E 271

Query: 243 APVIIVTE-NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           AP +++T+   +P      ++K + I+       + +++ L  RG  S+L E G  +A S
Sbjct: 272 APTLVLTQVGANPDFQKLLQQKGVEIVELASLTPEFVMSHLYDRGFCSVLWECGGTLAAS 331

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC-------VRRDYFGSDVCLE 353
            I    V  I+ + +  +IG    P+P+  G L  + M        VR    GSD  +E
Sbjct: 332 AIAQGAVQKILAFIAPKIIGGSHAPTPV--GDLGFDTMTEALILERVRWRVVGSDCLVE 388


>gi|254281521|ref|ZP_04956489.1| riboflavin biosynthesis protein RibD [gamma proteobacterium
           NOR51-B]
 gi|219677724|gb|EED34073.1| riboflavin biosynthesis protein RibD [gamma proteobacterium
           NOR51-B]
          Length = 371

 Score =  189 bits (481), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 131/365 (35%), Positives = 186/365 (50%), Gaps = 28/365 (7%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           +S D  +M+ AL  +       + NP V C++V +G VIG G T   G  HAE++ALE A
Sbjct: 3   TSADEIYMARALALAGEARFWATPNPHVGCVLVHEGKVIGEGFTQPAGGNHAEIEALEHA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
             +  GATAYVTLEPC+H GR+ PCA  +I+ G+ RVVV V DP   V GRG+  L   G
Sbjct: 63  TADPSGATAYVTLEPCAHTGRTGPCADALIDAGLTRVVVAVGDPYPAVDGRGIDRLRAAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++  +    +  +L R       + LK+A S D    MA   S  ITG  +++ 
Sbjct: 123 IEVSVGVLAVQASDLMAGFLMRMQRGWGRVRLKMAASLDGRTAMASGESQWITGVEARSD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSL 232
           V  LRA+S AI+ GIGTVLADD  LT R   L              P+R++LD   +   
Sbjct: 183 VQRLRAESCAIVTGIGTVLADDCALTVRSESLSLDEDARRRAVVKPPLRVVLDSAGRTPG 242

Query: 233 DSKIIKTALLAPVIIVT--ENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTS 289
           D++I  T   AP +I+T  + D P  A      + N    D R DL  +L  L  RG+  
Sbjct: 243 DARITSTG--APTLIITAPDVDAPDYAGEVEVAS-NATGHDGRLDLSAVLMQLGARGINE 299

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           +L+E G  +A +F+ + LVD ++LY++  ++G+   P              +  D     
Sbjct: 300 VLLEVGPTLAAAFLKAGLVDEVVLYQAPKLLGDTARP-----------LAALSIDRLAEA 348

Query: 350 VCLEY 354
           V LEY
Sbjct: 349 VALEY 353


>gi|218283800|ref|ZP_03489723.1| hypothetical protein EUBIFOR_02317 [Eubacterium biforme DSM 3989]
 gi|218215606|gb|EEC89144.1| hypothetical protein EUBIFOR_02317 [Eubacterium biforme DSM 3989]
          Length = 389

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 117/336 (34%), Positives = 184/336 (54%), Gaps = 19/336 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A++ ++   G T+ NP V  +IVKDG +IG G     G  HAE  A+    E 
Sbjct: 17  DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGRIIGEGYHKKYGELHAERNAIASLTES 76

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GA  YVTLEPC H+G++PPC + IIE  I++VV+   DP+ +V+G+G+Q L + G+ +
Sbjct: 77  AEGAVIYVTLEPCCHHGKTPPCTEAIIEQKIKKVVIGSRDPNPKVAGKGVQMLRKAGVTV 136

Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           V+  M  E      +F H Y+T    K  ++ +K A++ D  I      S  IT   S+ 
Sbjct: 137 VEDFMGEECDRLNPVFFH-YITM---KTPYVVMKYAMTLDGKIATKTGASKWITSLASRK 192

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +V  +R Q   I+VGIGTVL DDP L  R+ G +  SP+RI+ D   ++ LDS+I+K+A 
Sbjct: 193 EVQHMRHQYMGIMVGIGTVLEDDPMLNVRVEGWK--SPVRIVCDSKLRIQLDSQIVKSAK 250

Query: 242 LAPVIIV---TENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEG 294
               I+     +N    + +    + +  IYC    +  DLK+L+  L  RG+ S+L+EG
Sbjct: 251 KYRTIVAYADQKNTGEKIKI-LHTRGVETIYCPDEKNQIDLKRLMIDLGNRGIDSILLEG 309

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           G  +  S + + +V  +  + +  + G     +P+E
Sbjct: 310 GGTLNDSALRAGIVKEVQAFVAPKLFGGVAGKTPVE 345


>gi|168210245|ref|ZP_02635870.1| riboflavin biosynthesis protein RibD [Clostridium perfringens B
           str. ATCC 3626]
 gi|170711633|gb|EDT23815.1| riboflavin biosynthesis protein RibD [Clostridium perfringens B
           str. ATCC 3626]
          Length = 365

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 118/336 (35%), Positives = 183/336 (54%), Gaps = 16/336 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  AL  +R   G  + NP V  +IVK G +IG+G   + G  HAE+ ++  + + 
Sbjct: 2   DEFFMKKALELARKGEGYVNPNPLVGAVIVKGGEIIGQGYHEFFGGNHAEINSINSSIKS 61

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GAT YVTLEPC HYG++PPC + II+  ++RVVV   DP+  VSG+ ++ L + GI V
Sbjct: 62  TEGATIYVTLEPCCHYGKTPPCVEAIIKNKLKRVVVGTLDPNPLVSGKSIKILRESGIEV 121

Query: 127 D-RMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
              ++E E     +IF + Y+    E R  I LK A++ D  I      S  IT   S+ 
Sbjct: 122 KVGVLEKECIRLNEIF-NFYIK---ENRPFIALKWAMTLDGKIATKEFKSKWITNRKSRE 177

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKT 239
            VH LR +  +I+VGI TVL D+P+L CRLN  +  E    RI+LD   ++ LDS+I+K 
Sbjct: 178 FVHSLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKN 237

Query: 240 ALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294
              +  +I T N  D +     + K I +I  +      ++ ++L  L  + + S+L+EG
Sbjct: 238 QSESKTLIFTTNKKDKIKNEKLKDKGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEG 297

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           G  +  +F+ ++ V+ I  + +  V G     +P+E
Sbjct: 298 GGNLNFTFLENKKVNKIYAFVAPKVFGGKNAITPVE 333


>gi|254361993|ref|ZP_04978124.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Mannheimia haemolytica PHL213]
 gi|153093540|gb|EDN74520.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Mannheimia haemolytica PHL213]
          Length = 359

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 124/358 (34%), Positives = 185/358 (51%), Gaps = 20/358 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ A+  +    G TS NP V C+IVK+G +I  G     G  HAE  A+    E+  GA
Sbjct: 1   MAYAITLAEKARGWTSPNPLVGCVIVKNGNIIAEGYHQKAGSWHAERNAILNCEEDLTGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPC H+GR+PPC++ +IE GI++V +   DP+  VSG+G   L   GI +V+  
Sbjct: 61  TAYVTLEPCCHHGRTPPCSELLIERGIKKVFIGSRDPNPLVSGKGAAQLRAAGIEVVEDF 120

Query: 130 MESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           M +E      IF H   T    KR ++ LK  ++ D  I      S  ITG  ++  V  
Sbjct: 121 MRTECDALNPIFFHYIQT----KRPYVLLKYGMTADGKIATYTGNSKWITGEAARANVQK 176

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R +  AI+VG+ TVLADDP L  R+   ++  P+RI+ D   +  LDS++++TA     
Sbjct: 177 SRHEYSAIMVGVETVLADDPMLNSRMENAKQ--PVRIVCDSQLRTPLDSQLVQTARQYRT 234

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           II T N+D      +    + I+    R    DL  LL  L   G+ SLL+EGG+ +  S
Sbjct: 235 IIATLNNDAKKQAEYTACGVEILVTGERDKRVDLADLLQKLGELGIDSLLIEGGSQLNFS 294

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLEY 354
            +   LV+ +  Y +  +IG     +P+    + +    V+      +  G D+ L+Y
Sbjct: 295 VLEQGLVNRVHCYIAPKLIGGKAAKTPIGGKGIGELAQAVKLRLKSTELLGEDILLDY 352


>gi|158522090|ref|YP_001529960.1| riboflavin biosynthesis protein RibD [Desulfococcus oleovorans
           Hxd3]
 gi|158510916|gb|ABW67883.1| riboflavin biosynthesis protein RibD [Desulfococcus oleovorans
           Hxd3]
          Length = 363

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 132/364 (36%), Positives = 192/364 (52%), Gaps = 24/364 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM+ AL  +    G TS NP V  ++V+DG V+G+G  A  G PHAEV A+++AGE 
Sbjct: 3   DTYFMNMALGLAERGTGFTSPNPVVGAVVVRDGRVVGQGFHAAAGKPHAEVVAIDDAGEL 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGA  YVTLEPC+H GR+PPC + I + GI RVVV   D +  V+G G+Q+L  +GI V
Sbjct: 63  ARGADLYVTLEPCNHTGRTPPCTRKICDAGIARVVVATIDSNPHVAGGGIQYLESRGIAV 122

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              + E+E K  +  +       R  +T+K A++ D  I      S  +TG  ++  VH 
Sbjct: 123 TVGVCEAEAKKQIEWFAKYVTTGRPFVTVKCAMTLDGRIATRTGDSKWVTGEAARAFVHR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +R  SDAILVG+GT  AD+P LT R+ G++   PMRI+LD    +  D+ +      A  
Sbjct: 183 MRHASDAILVGVGTANADNPRLTARVEGMRTRDPMRIVLDTKLSIREDAAMFDLDSSAET 242

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR-----------DLKKLLTILVGRGVTSLLVEG 294
           +IV       +     KK  + +    R           D+  L+  L   G+TSLL+EG
Sbjct: 243 LIV-------VGPGHDKKKRDRLKGKARFFDAALAIGRIDMAGLMDGLGKMGITSLLIEG 295

Query: 295 GAAVAHSFINSRLVDSI-ILYRSQIVIGEGGIPSPLEEGYLE-KNFMCVRR---DYFGSD 349
           G  V  +   + +VD +   Y  +I+ G+ G+P     G  + KN + VR      F  D
Sbjct: 296 GGQVIGAAFAAGIVDKVCFFYAPKILGGDDGVPVCAGAGQEQMKNALPVRNVSVTRFDDD 355

Query: 350 VCLE 353
           + +E
Sbjct: 356 ILIE 359


>gi|302533295|ref|ZP_07285637.1| riboflavin biosynthesis protein RibD [Streptomyces sp. C]
 gi|302442190|gb|EFL14006.1| riboflavin biosynthesis protein RibD [Streptomyces sp. C]
          Length = 376

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 125/311 (40%), Positives = 169/311 (54%), Gaps = 16/311 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  A+  +   +G TS NP V C+I    G V+G G     G PHAEV AL  AGE ARG
Sbjct: 23  MRRAIELASRGLGSTSPNPVVGCVITDPAGAVVGEGWHERAGGPHAEVHALRAAGEAARG 82

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128
            TAYVTLEPC+H GR+ PCAQ +++ GI RVV  V DP+ + SG G   L   GI  +  
Sbjct: 83  GTAYVTLEPCNHTGRTGPCAQALVDAGIARVVYAVSDPNPQASGGGAT-LRAAGIDTEAG 141

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++  E +    A+LT     R H+T K A + D         S  IT   S+  VH LRA
Sbjct: 142 LLADEAEQGNTAWLTSVRLGRPHVTWKYAATLDGRSAAEDGSSRWITSPESRADVHRLRA 201

Query: 189 QSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           ++DA+LVG GT+ ADDP L  R ++G  +  P+R+ LD    L   ++I+  A  AP +I
Sbjct: 202 EADAVLVGGGTLRADDPHLAVRGVDGAVQ--PLRVALDTRAGLPATARILDDA--APTLI 257

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           VT  D     L       +++    RD    L  LL  L GRGV S+L+EGG  +A +F+
Sbjct: 258 VTGEDADTAHL----PGTDVLRLPLRDGRLPLGPLLAELYGRGVRSVLLEGGPTLAGAFL 313

Query: 304 NSRLVDSIILY 314
            +  VD ++ Y
Sbjct: 314 EAGAVDRVVGY 324


>gi|170680144|ref|YP_001742551.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli SMS-3-5]
 gi|300937023|ref|ZP_07151889.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 21-1]
 gi|170517862|gb|ACB16040.1| riboflavin biosynthesis protein RibD [Escherichia coli SMS-3-5]
 gi|300457854|gb|EFK21347.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 21-1]
          Length = 367

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 131/367 (35%), Positives = 188/367 (51%), Gaps = 20/367 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG  +G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGETVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           +I++             DD        +  +   +    DL  L+  L  + + S+ VE 
Sbjct: 243 RIVQQP--GETWFARTQDDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349
           G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      + G D
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCSLPG-LEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|26246419|ref|NP_752458.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli CFT073]
 gi|191173514|ref|ZP_03035041.1| riboflavin biosynthesis protein RibD [Escherichia coli F11]
 gi|218688277|ref|YP_002396489.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli ED1a]
 gi|227884578|ref|ZP_04002383.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli 83972]
 gi|300988034|ref|ZP_07178514.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 45-1]
 gi|300997399|ref|ZP_07181739.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 200-1]
 gi|331645587|ref|ZP_08346691.1| riboflavin biosynthesis protein RibD [Escherichia coli M605]
 gi|26106817|gb|AAN79002.1|AE016756_185 Riboflavin biosynthesis protein ribD [Escherichia coli CFT073]
 gi|190906223|gb|EDV65835.1| riboflavin biosynthesis protein RibD [Escherichia coli F11]
 gi|218425841|emb|CAR06647.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli ED1a]
 gi|222032209|emb|CAP74948.1| riboflavin biosynthesis protein ribD [Escherichia coli LF82]
 gi|227838664|gb|EEJ49130.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli 83972]
 gi|281177584|dbj|BAI53914.1| pyrimidine deaminase/reductase [Escherichia coli SE15]
 gi|300304218|gb|EFJ58738.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 200-1]
 gi|300407586|gb|EFJ91124.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 45-1]
 gi|312944991|gb|ADR25818.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315294207|gb|EFU53558.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 153-1]
 gi|324010091|gb|EGB79310.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 57-2]
 gi|324010674|gb|EGB79893.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 60-1]
 gi|330910208|gb|EGH38718.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia
           coli AA86]
 gi|331045749|gb|EGI17875.1| riboflavin biosynthesis protein RibD [Escherichia coli M605]
          Length = 367

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 192/371 (51%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++           E+     + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|289671055|ref|ZP_06492130.1| riboflavin biosynthesis protein RibD [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 369

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 118/328 (35%), Positives = 181/328 (55%), Gaps = 8/328 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S+ D R+M+ ALR +      T  NP V C+IV+DG+ +G G     G PHAEV AL  
Sbjct: 8   ASADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRA 67

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPC+HYGR+PPCA  +I+ G+ RVV  + DP  +V+G G   L   
Sbjct: 68  AGELARGATAYVTLEPCAHYGRTPPCALALIDAGVTRVVAAMADPFPQVNGGGFALLRDA 127

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI ++  +M ++ +     +L+R       + +K+  S D    +A   S  ITG  ++ 
Sbjct: 128 GIEVLSGVMHAQARTLNRGFLSRVERGWPWVRIKLGASLDGRTALASGQSKWITGADARA 187

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-PMRIILDPHFKLSLDSKIIKTA 240
            V   RA++ AIL G GTVLAD+P +T RL      + P+R++LD   + +L    I+  
Sbjct: 188 DVQRWRARACAILTGAGTVLADNPSMTVRLGDDTAFAPPLRVVLDSGLR-TLACANIRDG 246

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAV 298
             AP + +  + D + A A        +       DL  +L +L  RG+  + VE GA +
Sbjct: 247 -DAPTLYL--HGDAIAATALNGAEFAALPLSAGRFDLAAVLALLAKRGINEVHVEAGATL 303

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP 326
           + + + + LVD +++Y + +++G+   P
Sbjct: 304 SGALLQAGLVDELLIYMAPVLLGDTARP 331


>gi|255747035|ref|ZP_05420980.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholera CIRS 101]
 gi|262161421|ref|ZP_06030531.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae INDRE 91/1]
 gi|255735437|gb|EET90837.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholera CIRS 101]
 gi|262028732|gb|EEY47386.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae INDRE 91/1]
          Length = 365

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 175/335 (52%), Gaps = 26/335 (7%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A+ +A
Sbjct: 3   TSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+G+G+Q L   G
Sbjct: 63  GELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V+  ++E++ ++    +L R       + LK+A S D    +A   S  IT   ++  
Sbjct: 123 IEVEVGLLEADARVLNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPAARKD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLS 231
           V   RAQ+ AIL    TVLAD+  L  R   L               P+R+ILD   +L 
Sbjct: 183 VQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQHQLH 242

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR--GVTS 289
                       P + + +   PVL +A     + I   + +   + L  L+ +   V  
Sbjct: 243 ------------PELALYQTPSPVLRVASENAELCISAENGKLDLRELLALLAQQHNVNQ 290

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           L VE G+ +A S I  +LVD IILY +  ++G  G
Sbjct: 291 LWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDG 325


>gi|162447960|ref|YP_001621092.1| riboflavin biosynthesis protein [Acholeplasma laidlawii PG-8A]
 gi|161986067|gb|ABX81716.1| riboflavin biosynthesis protein [Acholeplasma laidlawii PG-8A]
          Length = 357

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 116/327 (35%), Positives = 174/327 (53%), Gaps = 14/327 (4%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            ++M  A   +    G  + NP V  +I+KDG VIG+G     G  HAEV A+  A E+ 
Sbjct: 7   TKYMKQAFNLAIKGEGFVNPNPLVGAVIIKDGKVIGKGYHKAFGQVHAEVDAINHATEDV 66

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI--- 124
            GAT +VTLEPCSH+G+ PPCA  +IE GI+ V +   DP+  V  +G++ L   GI   
Sbjct: 67  AGATMFVTLEPCSHHGKQPPCAFKLIEKGIKEVYIANLDPNPLVYKQGVKVLEDAGIKVH 126

Query: 125 --IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
             I+D +      IF H Y+T    KR  + +K A++ D  +      S  IT   S+  
Sbjct: 127 YGILDDLGLKVNDIFFH-YITT---KRPFVAMKYAMTLDGKLATKDFDSKWITNKKSRKY 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LR +  AILVG+ T++ DD +L  R +  +  +P+RIILDP  +    + ++KTA  
Sbjct: 183 VHDLRNKYSAILVGVNTIIKDDAKLDVRRSK-KSKNPVRIILDPKLQTPKSTYVVKTAKT 241

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            P  IV+E  D     ++    + II     DL KL+TIL    + S+ +EGGA    SF
Sbjct: 242 QPTWIVSETYDQ----SYVDLGVKIIQMPTIDLDKLMTILGEAKIDSIFIEGGAYTHASF 297

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPL 329
           + + LV+ +  + +  +IG     +P+
Sbjct: 298 LEANLVNKVYAFIAPKIIGGKNALTPI 324


>gi|241662321|ref|YP_002980681.1| riboflavin biosynthesis protein RibD [Ralstonia pickettii 12D]
 gi|240864348|gb|ACS62009.1| riboflavin biosynthesis protein RibD [Ralstonia pickettii 12D]
          Length = 370

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 121/330 (36%), Positives = 176/330 (53%), Gaps = 12/330 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S FD   M  AL  +   +  T+ NP V C+IV+D  VIG G T   G  HAEVQA+++A
Sbjct: 3   SDFDHAMMQRALALAEKGLFTTTPNPRVGCVIVRDDTVIGEGYTQPAGQDHAEVQAIKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G++ RGATAYVTLEPCSH+GR+PPCA  ++E GI RVV  ++DP+  VSGRGLQ L 
Sbjct: 63  QSRGQDVRGATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPAVSGRGLQKLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             G+ V   ++E E +     +++R       + +K+  S D    +    S  IT   +
Sbjct: 123 DAGVDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITEAEA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           +N  H  RA++ AIL GIGTV  D+P LT R +N  ++  P R+++D    + LD+ I+ 
Sbjct: 183 RNDGHRWRARACAILTGIGTVREDNPRLTVRAINTPRQ--PRRVLIDSALDVPLDAHILT 240

Query: 239 T-ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVE 293
                 P +I     +     A  ++   +I         DL  +L  L  R +  L VE
Sbjct: 241 ADGHHEPTLIFAAQPEAGRMRALSERGAEVILLPNAAGKVDLAAVLRELGRREINELHVE 300

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            G  +  S +   LVD I++Y +  V+G G
Sbjct: 301 AGFKLNGSLLREGLVDEILVYLAPKVLGSG 330


>gi|295093779|emb|CBK82870.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Coprococcus sp. ART55/1]
          Length = 382

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 118/342 (34%), Positives = 178/342 (52%), Gaps = 16/342 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
             FD  +M  A+  +R   G  + NP V  +IVKDG +IG G     G  HAE  A    
Sbjct: 8   DEFDPSYMRRAIELARRGTGAVNPNPLVGAVIVKDGRIIGEGYHVRYGELHAERAAFASL 67

Query: 64  GEEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            ++A   GA  YVTLEPC H+G+ PPC   IIE  IR+V    DDP+  V+G+G + L  
Sbjct: 68  KDQADAEGAVMYVTLEPCCHFGKQPPCVDAIIEHKIRKVYCGSDDPNAMVAGKGFKRLRD 127

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +    +++E       +    V K+ ++T+K A++ D  I      S  ITG  S+
Sbjct: 128 AGIEVYTHCLKAECDAINGIFFKYIVNKQPYVTMKYAMTMDGRIATHTGASKWITGEASR 187

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE------HSPMRIILDPHFKLSLDS 234
             V  LR +   I+ GIGTVLADDP LTCR+    +       +P+RI+ D   ++  DS
Sbjct: 188 AYVMELRNRHKGIMAGIGTVLADDPMLTCRIEKSTDRDTDNVRNPIRIVCDSKLRIPEDS 247

Query: 235 KIIKTALLAPVIIVTE---NDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGV 287
           +I++TA     I+ T      D       + K ++II  +      DL++L+TIL G+G+
Sbjct: 248 QIVQTAGEIETIVATTAAGASDSAKCERLKDKGVSIIETEDVDGQVDLRQLMTILGGKGI 307

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
             +L+EGG  + +S ++  LVD   ++ +  + G  G  SP+
Sbjct: 308 DGILLEGGGELNYSMVSEGLVDEACVFIAPKIFGGEGKYSPV 349


>gi|262168270|ref|ZP_06035967.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae RC27]
 gi|262023162|gb|EEY41866.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae RC27]
          Length = 365

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 119/336 (35%), Positives = 177/336 (52%), Gaps = 28/336 (8%)

Query: 4   SSFDARFMSAALRFS-RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +SFD + MS A+  + R H   TS NP+V C+I +   ++G G     G PHAEV A+ +
Sbjct: 3   TSFDHQMMSRAIELAWRGHF-TTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+G+G+Q L   
Sbjct: 62  AGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V+  ++E++ ++    +L R       + LK+A S D    +A   S  IT   ++ 
Sbjct: 122 GIEVEVGLLEADARVLNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPAARK 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V   RAQ+ AIL    TVLAD+  L  R   L               P+R+ILD   +L
Sbjct: 182 DVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQHQL 241

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR--GVT 288
                        P + + +   PVL +A     + I   + +   + L  L+ +   V 
Sbjct: 242 H------------PELALYQTPSPVLRVASENAELCISAENGKLDLRELLALLAQQHNVN 289

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            L VE G+ +A S I  +LVD IILY +  ++G  G
Sbjct: 290 QLWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDG 325


>gi|33152274|ref|NP_873627.1| riboflavin biosynthesis protein RibD [Haemophilus ducreyi 35000HP]
 gi|33148497|gb|AAP96016.1| riboflavin-specific deaminase [Haemophilus ducreyi 35000HP]
          Length = 368

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 123/362 (33%), Positives = 187/362 (51%), Gaps = 20/362 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A+  +    G T+ NP V C+IVK+  +I  G     G  HAE  A+    ++
Sbjct: 3   DVDYMARAIALAEQARGWTNPNPLVGCVIVKNDQIIAEGYHQKVGEWHAERNAILNCQQD 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-- 124
             GATAYVTLEPC H+GR+PPC   +IE GI +V V   DP+  V+G+G++ L   GI  
Sbjct: 63  LTGATAYVTLEPCCHHGRTPPCTDLLIERGINKVFVGSRDPNPLVTGKGIKQLQAAGIEV 122

Query: 125 IVDRMMESEGK---IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           I D M E+  +   IF H   T       ++ LK A++ D  I  A   S  I+G +++ 
Sbjct: 123 ITDFMREACDQLNPIFFHYMQT----TSPYVLLKYAMTADGKIATATGESKWISGELARQ 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V + R Q  AI+VG+GTVLAD+P L  R+   ++  P+R++ D H +  L  ++++TA 
Sbjct: 179 NVQITRHQYSAIMVGVGTVLADNPMLNSRMPNAKQ--PIRVVCDSHLRTPLACQLVQTAR 236

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
             P II T + D       +   + II C       DL  LL  L    + S+L+EGG+ 
Sbjct: 237 QYPTIIATASTDSTKIAQLKAFGVQIIQCKVANKQVDLVDLLAKLGAMQIDSVLLEGGST 296

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPL-EEGYLE----KNFMCVRRDYFGSDVCL 352
           +  S + + +V+ I  Y +  ++G     SP+   G L+     N       Y G D+ L
Sbjct: 297 LNFSALKAGVVNRIHCYIAPKLLGGSTAKSPIGGAGILQLAEAVNLTLKSTQYIGDDILL 356

Query: 353 EY 354
           +Y
Sbjct: 357 DY 358


>gi|52425429|ref|YP_088566.1| RibD protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307481|gb|AAU37981.1| RibD protein [Mannheimia succiniciproducens MBEL55E]
          Length = 373

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 113/339 (33%), Positives = 178/339 (52%), Gaps = 35/339 (10%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  A+  +      T+ NPSV C++VK G ++G+G     G PHAEV A+ EAG+ 
Sbjct: 8   DRAFMQLAIELAEKGQFTTTPNPSVGCVLVKQGEIVGKGFHFKAGEPHAEVMAMREAGKN 67

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GATAYVTLEPCSH+GR+PPCA+ +IE G+ +V+  ++DP+  V+G+GL+ L Q GI  
Sbjct: 68  AKGATAYVTLEPCSHFGRTPPCAKGLIEAGVVKVIAAMEDPNPSVAGQGLKMLQQAGIET 127

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +++ + +     +L R      ++ LK+A++ D     +   S  ITG  ++  V  
Sbjct: 128 AVGLLQEQAERLNRGFLKRMRTGLPYVQLKMAMTIDGRTATSTGESQWITGESARIDVQQ 187

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLSLDS 234
            RA++ AIL   GTVLAD+P L  R     E             P+R+I+D   ++S   
Sbjct: 188 ERAKASAILSASGTVLADNPSLNVRWEQFPEQLKADYKKETVRQPVRVIIDSKQQISSQL 247

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----------RDLKKLLTILVG 284
            + K             D PV     + +++     +C          + L + L I +G
Sbjct: 248 NLFKI------------DSPVWLAGIQPRDLTDFPANCEIICLMPEKEQSLLQALMIELG 295

Query: 285 -RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
            R + S+ VE GA +A + I   LVD ++LY +  ++G+
Sbjct: 296 KRQINSVWVEAGAKLAGALIEQNLVDELVLYIAPKLLGD 334


>gi|307249603|ref|ZP_07531590.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306858458|gb|EFM90527.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 364

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 119/363 (32%), Positives = 194/363 (53%), Gaps = 20/363 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++  +G T+ NP V C+IVK+G ++  G     G  HAE  A+    E+
Sbjct: 3   DLDYMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLHCKED 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GATAYVTLEPC H+GR+PPC+  +IE GI++V +   DP+  V+GRG   L Q G+ +
Sbjct: 63  LSGATAYVTLEPCCHHGRTPPCSNLLIERGIKKVFIGSSDPNPLVAGRGANQLRQAGVEV 122

Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           V+ +++ E      IF H   T    K  ++ +K A++ D  I      S  ITG  ++ 
Sbjct: 123 VEGLLKEECDALNPIFFHYIQT----KCPYVLMKYAMTADGKIATGSGESKWITGESARA 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +V   R Q  AI+VG+ TVLAD+P L  R+   ++  P+RI+ D   +  LD ++++TA 
Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQ--PVRIVCDSQLRTPLDCQLVQTAK 236

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
               +I T  DD      FR   + ++ C  R    DL+ LL  L    + SLL+EGG++
Sbjct: 237 EYRTVIATVCDDLQKVEQFRPLGVEVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352
           +  S + S +V+ +  Y +  ++G     +P+    +++    V+      +  G D+ L
Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356

Query: 353 EYI 355
           +Y+
Sbjct: 357 DYV 359


>gi|294341030|emb|CAZ89425.1| Riboflavin biosynthesis protein ribD [Includes:
           Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (Riboflavin-specific deaminase);
           5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
           reductase)] [Thiomonas sp. 3As]
          Length = 387

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 121/340 (35%), Positives = 183/340 (53%), Gaps = 23/340 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D RFM  AL  +   +  TS NP V C++V+DG V+G G T   G  HAEVQA+++A
Sbjct: 9   SEQDQRFMRRALDLAHSAMYRTSPNPRVGCVLVRDGQVLGEGATLAAGQDHAEVQAVKQA 68

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G E RGATAYVTLEPC+H+GR+PPCA  +   G+ RVV  + DP+  V+G+GLQ L 
Sbjct: 69  WERGHEVRGATAYVTLEPCAHHGRTPPCADLLATQGVARVVAALVDPNPLVAGQGLQRLR 128

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI VD  +   E +     +++R V     + LK+A S D +  +    S  IT   +
Sbjct: 129 DAGIQVDVGLFADEAREINLGFISRMVRGTPWVRLKVAASLDGVTALPNGTSQWITSEAA 188

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIK 238
           +   H  RA++ A+L G+GTV ADDP+L  R   +Q    P+RI++D   +     ++++
Sbjct: 189 RADGHHWRARACAVLTGLGTVRADDPQLNVR--AVQTPRQPIRIVVDSRLECPATVRLLQ 246

Query: 239 TALLAPVIIV----TENDDPVLALAFRKKNINIIYCDC-----------RDLKKLLTILV 283
           +A  +P+ IV     E   P LA        ++   D             DL+ L+ +L 
Sbjct: 247 SA-DSPLWIVHALPPEQAAPRLAALRSAATASLDLQDIALPVDPDKPGKTDLRALMQVLG 305

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            RG+  L  E G  +  S + + +VD +++Y +  ++GEG
Sbjct: 306 QRGINELHCEAGEKLNGSLLRAGVVDELLMYLAPQLLGEG 345


>gi|300692257|ref|YP_003753252.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
           deaminase (N-terminal);
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Ralstonia solanacearum PSI07]
 gi|299079317|emb|CBJ51989.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
           deaminase (N-terminal);
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Ralstonia solanacearum PSI07]
          Length = 370

 Score =  189 bits (479), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 121/329 (36%), Positives = 174/329 (52%), Gaps = 10/329 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S FD   M  AL  +   +  T+ NP V C++V+D  +IG G T   G  HAE+QA+++A
Sbjct: 3   SDFDHAMMQRALALAENGLFTTTPNPRVGCVLVRDDTIIGEGFTQPAGQDHAEIQAIKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G + RGATAYVTLEPCSH+GR+PPCA  ++E G+ RVV  ++DP+  VSGRGLQ L 
Sbjct: 63  QARGHDVRGATAYVTLEPCSHFGRTPPCADRLVEAGVARVVAAMEDPNPAVSGRGLQKLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI V   ++E E +     +++R       + +K+  S D    +    S  IT   +
Sbjct: 123 EAGIDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITETEA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +N  H  RA++ AIL GIGTV  D+P LT R        P RI++D    + LD+ I+  
Sbjct: 183 RNDGHRWRARACAILTGIGTVREDNPRLTVRAIPTPRQ-PRRILVDSGLDVPLDAHILTA 241

Query: 240 -ALLAPVIIVTENDDPVLALAFRKKNINIIY---CDCR-DLKKLLTILVGRGVTSLLVEG 294
               AP +I     +     A  K    +I     D + DL  +L  L  R +  L VE 
Sbjct: 242 DDHHAPTLIFAARPEAGRMRALAKHGAEVILLPNADGKVDLPAMLRELGRREINELHVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           G  +  S +   LVD I++Y +  V+G G
Sbjct: 302 GYKLNGSLLREGLVDEILVYLAPKVLGSG 330


>gi|291541288|emb|CBL14399.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Roseburia intestinalis XB6B4]
          Length = 396

 Score =  189 bits (479), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 119/333 (35%), Positives = 178/333 (53%), Gaps = 18/333 (5%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GE 65
           R+M  A+  +    G T TNP V  ++VK+  +IG G     G  HAE +AL +    GE
Sbjct: 35  RYMRRAMELAELGRGWTKTNPVVGAVLVKEDRIIGEGYHKKFGGLHAEREALADCRSRGE 94

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +  GA  YVTLEPC HYG++PPC Q +IE GI  V V   D +  V+G G++ L ++GI+
Sbjct: 95  DPAGADLYVTLEPCCHYGKTPPCTQAVIEAGISHVFVGAKDINPLVAGGGIRQLREQGIL 154

Query: 126 VDRMM-----ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           V   +     E + ++F H   T    K  ++ +K A++ D  I  A   S  ITG  ++
Sbjct: 155 VTEGVLQEECEYQNRVFFHYIQT----KLPYVRMKYAMTLDGKIASASGKSKWITGEAAR 210

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            QVH +R +   I+VG GTV+ADDP L CRL   Q   P+RI+ D   ++ L S+I++TA
Sbjct: 211 EQVHRMRHEMTGIMVGAGTVIADDPMLNCRLP--QTKDPVRIVCDTTLRIPLKSRIVQTA 268

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
                II T   D      ++K    II  +      DLK+L+  L   G+ S+L+EGGA
Sbjct: 269 EEQKTIIATCCQDEARIREYQKYACRIIVTEQADGKVDLKELMRQLGADGIESVLLEGGA 328

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
            +  S + + +V+ +  Y +  + G     SP+
Sbjct: 329 MLNWSALEAGIVNEVYAYVAPKLFGGADAKSPV 361


>gi|94311620|ref|YP_584830.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Cupriavidus metallidurans CH34]
 gi|93355472|gb|ABF09561.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Cupriavidus metallidurans CH34]
          Length = 373

 Score =  189 bits (479), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 114/330 (34%), Positives = 178/330 (53%), Gaps = 12/330 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D   M  AL  +   +  T+ NP V C+++KDG+VIG G T   G  HAE+QA+++A
Sbjct: 3   SAADYTAMEQALALAARGMFTTTPNPRVGCVLMKDGVVIGEGYTQPAGQDHAEIQAMKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G +  GATAYVTLEPCSH+GR+PPCA  ++  GI RVV  ++DP+  VSGRGLQ L 
Sbjct: 63  ISRGHDPAGATAYVTLEPCSHFGRTPPCADALVRAGIARVVAAMEDPNPTVSGRGLQRLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++E E +     +++R       + +K+A S D    +    S  ITG  +
Sbjct: 123 DAGIDVRCGLLEKEARDLNIGFISRMTRGLPWVRVKVAASLDGGTALHDGTSQWITGQPA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           ++  H  RA++ AIL GIGTV  D+P LT R        P R+++D   ++ LD++I+  
Sbjct: 183 RDDGHAWRARACAILTGIGTVRDDNPALTVRAIPTPRQ-PQRVLVDSRLEVPLDAQILNR 241

Query: 240 ---ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLV 292
                  PV++    +D     A   + + ++         +L+++L  L  RG+  L V
Sbjct: 242 DTGDFAKPVLVFCAIEDKARQRALEARGVEVVVLPNPHGKVELRRMLEELARRGINELHV 301

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
           E G  +  S I     D +++Y +  ++G+
Sbjct: 302 EAGFKLNGSLIREGCADELLVYLAPKLLGD 331


>gi|170693630|ref|ZP_02884788.1| riboflavin biosynthesis protein RibD [Burkholderia graminis C4D1M]
 gi|170141412|gb|EDT09582.1| riboflavin biosynthesis protein RibD [Burkholderia graminis C4D1M]
          Length = 385

 Score =  189 bits (479), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 130/358 (36%), Positives = 186/358 (51%), Gaps = 23/358 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +R  +  T  NP V C+IVK+G VIG G T   G  HAE++A+++A
Sbjct: 3   SQTDFVHMERALALARRGMYTTDPNPRVGCVIVKNGEVIGEGFTQPAGQDHAEIRAMKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G + RGATAYVTLEPCSH+GR+PPCA  +IE  + RVV  ++DP+ +VSGRGL  L 
Sbjct: 63  RSRGHDLRGATAYVTLEPCSHFGRTPPCANALIEAQVARVVAAMEDPNPQVSGRGLAILR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++ +E       +++R    R  + +K+A S D   G+    S  ITG  +
Sbjct: 123 DAGIEVRCGLLANEAHELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGVSQWITGEAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H  RA++ AIL GIGTV  DDP +T R        P R+++D   ++S  ++I+  
Sbjct: 183 RADGHAWRARASAILTGIGTVREDDPRMTVRAVDTPRQ-PQRVLIDSQLEVSPHAQILAG 241

Query: 240 ALLAPVIIVTENDDP---VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLV 292
              AP +I   N D      A A R++   I+         DL  LL +L  R V  L V
Sbjct: 242 ---APTLIFCGNLDERHRERAEALRERGAEIVQMANAAGKVDLPGLLKVLGERQVNELHV 298

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIG-------EGGIPSPLEEGYLEKNFMCVRR 343
           E G  +  S +    VD +++Y +  ++G         G P  L EG ++  F  V R
Sbjct: 299 EAGYKLNGSLLREGCVDELLVYLAPSLLGIDSMSMFNLGAPETL-EGRVKLAFHNVER 355


>gi|146329385|ref|YP_001209386.1| riboflavin biosynthesis protein RibD [Dichelobacter nodosus
           VCS1703A]
 gi|146232855|gb|ABQ13833.1| riboflavin biosynthesis protein RibD [Dichelobacter nodosus
           VCS1703A]
          Length = 368

 Score =  188 bits (478), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 110/323 (34%), Positives = 171/323 (52%), Gaps = 5/323 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  +R  +   + NP V C+IVK+  +IG G     G  HAE+ AL  AG +
Sbjct: 12  DLFYMHRALELARNSIFSAAPNPRVGCVIVKNHTIIGEGWHQRAGEAHAEINALNAAGTQ 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           AR AT YVTLEPC+H+GR+PPC   +I  G++RVV+   DP+  V+G+G+  L   GI V
Sbjct: 72  ARDATVYVTLEPCAHFGRTPPCTHALIAAGVKRVVIACSDPNPLVAGKGIAALRAAGISV 131

Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           ++ + ++  + L+  +  R    R  +TLKIA S D    +A   S  ITG +++  VH 
Sbjct: 132 EQGICAQEALQLNRPFFHRMRWGRPWVTLKIAASMDGRTALANGESQWITGELARKDVHF 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            R  +DA+L G G+V+ D+  LT R    L  + P+R+++D   K   ++ +      +P
Sbjct: 192 HRLAADAVLAGTGSVIGDNARLTARFPTDLPANPPLRVVIDSQLKTPANAALFCDP--SP 249

Query: 245 VIIVTENDDP-VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           +++VT    P          ++         L  LL  L  R +  L VE G  +A +F+
Sbjct: 250 ILMVTTQPPPQSFPQMVEYLSLPATEQGKVPLSALLDELGRRQINHLFVEAGMQLAGAFL 309

Query: 304 NSRLVDSIILYRSQIVIGEGGIP 326
             +LVD I+LY +   +G+   P
Sbjct: 310 TEQLVDEILLYLAPTFLGDSARP 332


>gi|302875673|ref|YP_003844306.1| riboflavin biosynthesis protein RibD [Clostridium cellulovorans
           743B]
 gi|307688111|ref|ZP_07630557.1| riboflavin biosynthesis protein RibD [Clostridium cellulovorans
           743B]
 gi|302578530|gb|ADL52542.1| riboflavin biosynthesis protein RibD [Clostridium cellulovorans
           743B]
          Length = 364

 Score =  188 bits (478), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 125/366 (34%), Positives = 191/366 (52%), Gaps = 16/366 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            +  +M  AL  ++   G  S NP V  +IVK+G +IG G     G PHAEV A+    +
Sbjct: 1   MNESYMRRALELAKLGAGRVSPNPMVGAVIVKNGEIIGEGYHKQYGGPHAEVNAIASVSD 60

Query: 66  --EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
             E  G+T YVTLEPC HYG++PPC + II+  I+ VV+   DP+  V+G+G++ L  +G
Sbjct: 61  NGELEGSTIYVTLEPCCHYGKTPPCTKAIIDNKIKTVVIGTLDPNPLVAGKGVEILRAEG 120

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I ++  ++E E      +++     K   + +K A++ D  I  +   S  IT   S+  
Sbjct: 121 IEVIVGVLEEECLKINESFMKYIKTKTPFVIMKAAMTLDGKIATSTGDSKWITNEESRIN 180

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LR +   I+VGI TVL DDPELTCRL G    SP RII+D   K+ L++K++     
Sbjct: 181 VHKLRNKVSGIMVGINTVLKDDPELTCRLEG--GASPKRIIVDSGLKIPLNAKVLNAKDK 238

Query: 243 APVII-VTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297
             VI+  T   D        ++ + +I    ++    LKKL+  L    V S+L+EGG  
Sbjct: 239 VEVIVATTRKADESKVEVLERQGVKVIIVPEKEQKVNLKKLMEELGNLKVDSVLLEGGGT 298

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
           +  S +   ++D +  Y +  +IG     +P+E   + K     N   +R   FG D+ +
Sbjct: 299 LCFSALEEGIIDKVQFYIAPKIIGGENSKTPVEGVGINKIKDAINVKDLRVSTFGGDILI 358

Query: 353 E-YIGK 357
           E YI K
Sbjct: 359 EGYIRK 364


>gi|182626736|ref|ZP_02954476.1| riboflavin biosynthesis protein RibD [Clostridium perfringens D
           str. JGS1721]
 gi|177907904|gb|EDT70496.1| riboflavin biosynthesis protein RibD [Clostridium perfringens D
           str. JGS1721]
          Length = 366

 Score =  188 bits (478), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 119/336 (35%), Positives = 182/336 (54%), Gaps = 16/336 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  AL  +R   G  + NP V  +IVKDG +IG+G   + G  HAE+ A+  + + 
Sbjct: 2   DEFFMKKALELARKGEGYVNPNPLVGAVIVKDGEIIGQGYHEFFGGNHAEINAINSSIKS 61

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GAT YVTLEPC HYG++PPC + II+   +RVVV   DP+  VSG+ ++ L + GI V
Sbjct: 62  TEGATIYVTLEPCCHYGKTPPCVEAIIKNRFKRVVVGNLDPNPLVSGKSIKILRESGIEV 121

Query: 127 D-RMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
              ++E E     +IF + Y+    E R  I LK A++ D  I      S  IT   S+ 
Sbjct: 122 KVGVLEKECIRLNEIF-NFYIK---ENRPFIALKWAMTLDGKIATKDFKSKWITNKKSRE 177

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKT 239
            VH LR +  +I+VGI TVL D+P+L CRLN  +  E    RI+LD   ++ LDS+I+K 
Sbjct: 178 FVHSLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKN 237

Query: 240 ALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294
              +  +I T N  D +     +   I +I  +      ++ ++L  L  + + S+L+EG
Sbjct: 238 QNESKTLIFTTNKKDKIKNEKLKDIGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEG 297

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           G  +  +F+ ++ V+ I  + +  V G     +P+E
Sbjct: 298 GGNLNFTFLENKKVNKIYAFVAPKVFGGKNAITPVE 333


>gi|187927760|ref|YP_001898247.1| riboflavin biosynthesis protein RibD [Ralstonia pickettii 12J]
 gi|187724650|gb|ACD25815.1| riboflavin biosynthesis protein RibD [Ralstonia pickettii 12J]
          Length = 370

 Score =  188 bits (478), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 120/330 (36%), Positives = 176/330 (53%), Gaps = 12/330 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S FD   M  AL  +   +  T+ NP V C+IV+D  VIG G T   G  HAE+QA+++A
Sbjct: 3   SDFDHAMMQRALALAEKGLFTTTPNPRVGCVIVRDDTVIGEGYTQPAGQDHAEIQAIKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G++ RGATAYVTLEPCSH+GR+PPCA  ++E GI RVV  ++DP+  VSGRGLQ L 
Sbjct: 63  QSRGQDVRGATAYVTLEPCSHFGRTPPCADRLVEAGITRVVAAMEDPNPAVSGRGLQKLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             G+ V   ++E E +     +++R       + +K+  S D    +    S  IT   +
Sbjct: 123 DAGVDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGISQWITETEA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           +N  H  RA++ AIL GIGTV  D+P LT R +N  ++  P R+++D    + LD+ I+ 
Sbjct: 183 RNDGHRWRARACAILTGIGTVREDNPRLTVRAINTPRQ--PRRVLIDSALDVPLDAHILT 240

Query: 239 T-ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVE 293
                 P +I     +     A  ++   +I         DL  +L  L  R +  L VE
Sbjct: 241 ADGHHEPTLIFAAQPEAGRMRALSERGAEVILLPNAAGKVDLAAVLRELGRREINELHVE 300

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            G  +  S +   LVD I++Y +  V+G G
Sbjct: 301 AGFKLNGSLLREGLVDEILVYLAPKVLGSG 330


>gi|152979034|ref|YP_001344663.1| riboflavin biosynthesis protein RibD [Actinobacillus succinogenes
           130Z]
 gi|150840757|gb|ABR74728.1| riboflavin biosynthesis protein RibD [Actinobacillus succinogenes
           130Z]
          Length = 375

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 116/329 (35%), Positives = 176/329 (53%), Gaps = 17/329 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  +R     T+ NP+V C++VK   ++G G     G PHAEV A+ +AG+ 
Sbjct: 8   DQAYMQLALDLARRGRFTTTPNPNVGCVLVKHNKIVGTGFHFRAGEPHAEVMAIRDAGDN 67

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-- 124
            +GATAYVTLEPCSHYGR+PPCAQ +I  G+ +V++   DP+ +V+GRGL+ L   GI  
Sbjct: 68  TQGATAYVTLEPCSHYGRTPPCAQGLINAGVTKVIIATQDPNPQVAGRGLKMLQDAGIES 127

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
            V  + E    + L  +L R       + LK+A+S D    MA   S  ITG  ++  V 
Sbjct: 128 AVGLLAEKAEAVNL-GFLKRMRTGMPFVQLKLAMSLDGRTAMASGESKWITGEAARADVQ 186

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
             RAQ+ AIL    TVLADDP+L  R   L +             P+R+ILD   ++   
Sbjct: 187 EGRAQASAILSTAETVLADDPQLNVRWEQLPQAVQIEYSLTDLRQPIRVILDRRHRVQPH 246

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC-RDLKKLLTILVGRGVTSLLV 292
            ++ +  + +PV +V+E    + A     ++I +   +    L  L+  L  R + ++ V
Sbjct: 247 HRLFR--IESPVWLVSEKPRDMSAFPAFCEHIQLKTTENPTALYALMQELGKRQINTIWV 304

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           E GA +A + I   L D +I+Y +  ++G
Sbjct: 305 EAGATLAGALIEQNLADELIIYMAPKLLG 333


>gi|301049614|ref|ZP_07196565.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 185-1]
 gi|300298607|gb|EFJ54992.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 185-1]
          Length = 367

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQPQGLSPQQNLRQPVRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++           E+     + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|153855732|ref|ZP_01996746.1| hypothetical protein DORLON_02764 [Dorea longicatena DSM 13814]
 gi|149751955|gb|EDM61886.1| hypothetical protein DORLON_02764 [Dorea longicatena DSM 13814]
          Length = 378

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/338 (34%), Positives = 184/338 (54%), Gaps = 20/338 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A++ ++   G T+ NP V  +IVKDG +IG G     G  HAE  A+    E 
Sbjct: 3   DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGRIIGEGYHKKCGELHAERNAIASLTES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GAT YVTLEPC HYG++PPC + IIE  I++VV+   DP+ +V+G+G Q L + GI +
Sbjct: 63  AEGATIYVTLEPCCHYGKTPPCTEAIIEQKIKKVVIGSRDPNPKVAGKGAQILRESGITV 122

Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           V   M  E      +F H Y+T    K  ++ +K A++ D  I      S  ITG  ++ 
Sbjct: 123 VQDFMREECDCLNPVFFH-YITT---KTPYVVMKYAMTLDGKIATKTGASKWITGEPARQ 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +V  +R +   I+ GIGTVLADDP L  R+ G +  SP+RI+ D   ++ LDS+I+++A 
Sbjct: 179 EVQHMRHRYMGIMAGIGTVLADDPMLNVRVEGWK--SPVRIVCDSSLRIPLDSQIVRSAK 236

Query: 242 LAPVIIV----TENDDPVLALA-FRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLV 292
               I+      EN++    +     K ++ + C       DLKKL+T L   G+ S+L+
Sbjct: 237 EYRTIVAYAGREENEEITEKIERLHAKGVDTVCCPDEKGQIDLKKLMTYLGNEGIDSILL 296

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           EGG  +  S + + +V  +  + +  + G     +P++
Sbjct: 297 EGGGTLNDSALRAGIVKEVHCFIAPKLFGGKNSKTPVQ 334


>gi|322377269|ref|ZP_08051761.1| riboflavin biosynthesis protein RibD [Streptococcus sp. M334]
 gi|321281982|gb|EFX58990.1| riboflavin biosynthesis protein RibD [Streptococcus sp. M334]
          Length = 366

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 112/320 (35%), Positives = 176/320 (55%), Gaps = 7/320 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G PHAE  AL+   E 
Sbjct: 3   DSKYMQLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + V
Sbjct: 63  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A++ D  I      S  ITG  ++  VH 
Sbjct: 123 TVGVLENECLNLIKSFRKYITQHVPYVFMKYAMTMDGKIATKTNHSKWITGEEARKHVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR Q  AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 183 LRHQVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SLL+EGG+ +  S
Sbjct: 241 YIATSSEDKNKMKLYKNHGCEILSIKKKGNHIDLSDLMQHLGNMQIDSLLLEGGSLMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIG 321
            +  ++VD + +Y +  + G
Sbjct: 301 ALEQQIVDELKIYIAPKIFG 320


>gi|257063444|ref|YP_003143116.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Slackia heliotrinireducens DSM 20476]
 gi|256791097|gb|ACV21767.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Slackia heliotrinireducens DSM 20476]
          Length = 371

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 179/339 (52%), Gaps = 19/339 (5%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D + M  A+  +R   G T+ NP V  +IVKDG VIG G     G  HAE  AL    
Sbjct: 2   TADEKMMRRAIELARTAAGWTNPNPLVGAVIVKDGRVIGEGCHERYGDLHAERNALASCT 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E  +GAT YVTLEPCSH G+ PPCA  ++E GI RVVV   DP+  VSGRG+  L   GI
Sbjct: 62  ESPQGATMYVTLEPCSHTGKQPPCADALVEAGIARVVVGSRDPNPLVSGRGIARLRAAGI 121

Query: 125 IVDR---MMESEG--KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
            V+      E +G   +F H   T    K  ++  K A++ D  I  A   +  ++   S
Sbjct: 122 QVEEDFLRQECDGINPVFFHFITT----KTPYVVAKWAMTADGKIATATRDARWVSCEAS 177

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H LR +   I+VG+ TVLADDP L  R  G+  + P+RI+ D   ++ LDS ++++
Sbjct: 178 RADTHELRHRLAGIMVGVNTVLADDPMLNAR-RGVPSNQPLRIVCDSSLRIPLDSALVRS 236

Query: 240 ALLAPVII-----VTENDDPVLALAFRKKNINIIY---CDCR-DLKKLLTILVGRGVTSL 290
           A   PV++     + + +    A+  R   ++++     D + DL  L+  L   GV S+
Sbjct: 237 ATEVPVLVACACNIDQGERLDKAIRLRAAGVDVVSLPGADGKVDLAALMAHLGESGVDSV 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
           LVEGG  +  +   S LVD +++Y +  V G    P+P+
Sbjct: 297 LVEGGGTLHANMFKSGLVDEVVVYLAPKVCGGTSAPTPV 335


>gi|310827884|ref|YP_003960241.1| riboflavin biosynthesis protein RibD [Eubacterium limosum KIST612]
 gi|308739618|gb|ADO37278.1| riboflavin biosynthesis protein RibD [Eubacterium limosum KIST612]
          Length = 367

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 125/372 (33%), Positives = 193/372 (51%), Gaps = 21/372 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  +    G  + NP V  +IVK+G VIGRG     G PHAE  A+    E+
Sbjct: 3   DQDYMRLALEEAWKGCGFVNPNPMVGAVIVKNGCVIGRGAHERYGGPHAERNAIAHCTED 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            + AT YVTL PC H+G++PPC   ++E GIRRVV+   DP+  V+ + ++ L Q G+ +
Sbjct: 63  LQDATLYVTLTPCCHFGKTPPCTDVVLENGIRRVVIGSHDPNPLVAEKSIEILRQHGVEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +++ E      A+       R ++ +K A++ D  +  A   S  ITG +++ +VHL
Sbjct: 123 TTGILQQECDALNDAFFHFIRIHRPYVVMKYAMTMDGKVATASGKSKWITGELARERVHL 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R +  AIL GIGTVLADDP LTCR+ G ++  P+RI+ D   ++ L ++I+KTA     
Sbjct: 183 DRKRYAAILTGIGTVLADDPLLTCRIPGGRD--PVRIVCDTKLRIPLTAQIVKTAAKTRT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           II T + D       ++K   ++         DLK L+  L    + S+L+EGG  +  +
Sbjct: 241 IIATGSGDNKKQSLLKQKGCEVLKMTVENGRIDLKALMRRLGEMAIDSILMEGGPQMNSA 300

Query: 302 FINSRLVDSIILY---------RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            + S +V+ I  Y         +++  +G  G+ SP     L    +       G D+ L
Sbjct: 301 ALESGIVNKIQAYVAPKLFGGQQAKTPVGGTGVGSPEAAWRLSAPVIT----KLGQDILL 356

Query: 353 EYIGKNLCLQEL 364
           E    + CLQEL
Sbjct: 357 ESEVVS-CLQEL 367


>gi|134105070|pdb|2O7P|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In
           Complex With The Oxidised Nadp+ Cofactor In The Active
           Site Of The Reductase Domain
 gi|134105071|pdb|2O7P|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli In
           Complex With The Oxidised Nadp+ Cofactor In The Active
           Site Of The Reductase Domain
          Length = 380

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 129/374 (34%), Positives = 187/374 (50%), Gaps = 22/374 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   D  + + AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  
Sbjct: 4   IQGQDEYYXARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRX 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE+A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV    DP+ +V+GRGL  L Q 
Sbjct: 64  AGEKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASXQDPNPQVAGRGLYRLQQA 123

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V   +  SE +     +L R      +I LK+  S D     A   S  IT   ++ 
Sbjct: 124 GIDVSHGLXXSEAEQLNKGFLKRXRTGFPYIQLKLGASLDGRTAXASGESQWITSPQARR 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKL 230
            V LLRAQS AIL    TVLADDP LT R + L E +           P+RI++D   ++
Sbjct: 184 DVQLLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRV 243

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTS 289
           +   +I++          T+ D        R   + I          +L   +G+  + S
Sbjct: 244 TPVHRIVQQPGET-WFARTQEDSREWPETVR--TLLIPEHKGHLDLVVLXXQLGKQQINS 300

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRD 344
           + VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      
Sbjct: 301 IWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIR 359

Query: 345 YFGSDVCLEYIGKN 358
           + G DVCL  +G +
Sbjct: 360 HVGPDVCLHLVGAS 373


>gi|193065186|ref|ZP_03046259.1| riboflavin biosynthesis protein RibD [Escherichia coli E22]
 gi|194428808|ref|ZP_03061343.1| riboflavin biosynthesis protein RibD [Escherichia coli B171]
 gi|260842612|ref|YP_003220390.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli O103:H2 str. 12009]
 gi|192927160|gb|EDV81781.1| riboflavin biosynthesis protein RibD [Escherichia coli E22]
 gi|194413111|gb|EDX29398.1| riboflavin biosynthesis protein RibD [Escherichia coli B171]
 gi|257757759|dbj|BAI29256.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli O103:H2 str. 12009]
 gi|323160479|gb|EFZ46427.1| riboflavin biosynthesis protein RibD [Escherichia coli E128010]
          Length = 367

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSTQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQVLYPQQNLRQPVRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++           E+     + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + +   LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQVGLVDELIVYIAPKLLGSDARGLCSLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|293413668|ref|ZP_06656317.1| riboflavin biosynthesis protein RibD [Escherichia coli B185]
 gi|291433726|gb|EFF06699.1| riboflavin biosynthesis protein RibD [Escherichia coli B185]
          Length = 367

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQHNLRQPVRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
            I++           E+     + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 HIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|325282059|ref|YP_004254601.1| riboflavin biosynthesis protein RibD [Odoribacter splanchnicus DSM
           20712]
 gi|324313868|gb|ADY34421.1| riboflavin biosynthesis protein RibD [Odoribacter splanchnicus DSM
           20712]
          Length = 397

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 125/370 (33%), Positives = 197/370 (53%), Gaps = 19/370 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + D  +M+ A   +    G  + NP V  +IVKDG +IG G     G  HAE  A ++
Sbjct: 21  METKDREYMNRARILADRGRGWVNPNPLVGAVIVKDGRIIGEGWHERYGGLHAERNAFKQ 80

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
             E+  GAT YVTLEPC HYG++PPC + +IE  I RVVV + DP+  V+G+G++ L + 
Sbjct: 81  CTEDPAGATLYVTLEPCCHYGKTPPCTEAVIENRIARVVVGLLDPNPLVAGKGIEMLRKA 140

Query: 123 GIIVDRMMESE-----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           GI+V+  +E E      ++FL    TR    R  I +K A++ D  I      S  +TG 
Sbjct: 141 GIVVETGVEEEKLREQNRVFLKYITTR----RPWIVMKTAMTLDGKIAAYTGDSHWVTGE 196

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            S+ +V  +R+    I+VG GTV ADDP L CRL G +   P+RII+D    ++ DS+++
Sbjct: 197 ESRKKVQEMRSVLMGIMVGSGTVKADDPLLNCRLKG-EVRQPVRIIVDSTAAIATDSQLV 255

Query: 238 KTALLAPVIIV-TENDDPVLALAFRKKNINIIY---CDCR-DLKKLLTILVGRGVTSLLV 292
           +TA     ++  T   D    +  ++K +  I    CD R DL+ L T L   G+ S+L+
Sbjct: 256 RTADRYRTLVAHTSRADAGKLVQLQQKGVETILCPGCDNRVDLQALTTKLGQAGIDSVLL 315

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           EGG  +  +F+   LVD +  + +  +IG     +P+E     K    ++       V +
Sbjct: 316 EGGGELNEAFLRQGLVDEVYAFIAPKLIGGKDAKTPVE----GKGIAWMKEAIALQSVSI 371

Query: 353 EYIGKNLCLQ 362
           E +G++  ++
Sbjct: 372 EKVGEDFLIK 381


>gi|307628117|gb|ADN72421.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli UM146]
          Length = 361

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 132/367 (35%), Positives = 191/367 (52%), Gaps = 28/367 (7%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEVQAL  AGE+A+GA
Sbjct: 1   MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVQALRMAGEKAKGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
           TAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V   +
Sbjct: 61  TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  LRAQ
Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDSKIIK 238
           S AIL    TVLADDP LT R + L E +           P+RI++D   +++ + +I++
Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPEHRIVQ 240

Query: 239 TALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
                      E+     + V  L   +   ++      DL  L+  L  + + S+ VE 
Sbjct: 241 QPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSIWVEA 294

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349
           G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      + G D
Sbjct: 295 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPG-LEKLADAPQFKFKEIRHVGPD 353

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 354 VCLHLVG 360


>gi|254410513|ref|ZP_05024292.1| riboflavin biosynthesis protein RibD [Microcoleus chthonoplastes
           PCC 7420]
 gi|196182719|gb|EDX77704.1| riboflavin biosynthesis protein RibD [Microcoleus chthonoplastes
           PCC 7420]
          Length = 380

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 112/328 (34%), Positives = 182/328 (55%), Gaps = 5/328 (1%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           + FD   M   +  +R  +G TS NP V  +IV+DG ++G G     G PHAE+ AL +A
Sbjct: 23  TPFDRTMMQRCIELARRALGRTSPNPLVGAVIVRDGAMVGEGFHPGAGQPHAEIFALRQA 82

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G++++GAT YV LEPC+HYGR+PPC + +I  G+ +VVV + DP+  V+G G++ L + G
Sbjct: 83  GDKSQGATIYVNLEPCNHYGRTPPCTEALIAAGVAKVVVGMVDPNPLVAGGGIERLKKAG 142

Query: 124 IIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   +E+E  +    A++ R + KR    LK A++ D  I  A   S  +TG  ++  
Sbjct: 143 IEVVVGVETEACRQLNEAFIHRILHKRPWGMLKYAMTLDGKIATASGHSAWVTGQEARRY 202

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LR   DA++VG  TV  D+P LT   +    H+P+R+++     L +D+++ +TA  
Sbjct: 203 VHQLRTACDAVIVGGNTVRLDNPHLTS--HDTDTHNPLRVVMSRTLDLPIDARLWETA-D 259

Query: 243 APVIIVTE-NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           AP +++TE   +P L      K + +I        K +  L  R ++++L E G  +A  
Sbjct: 260 APTLVLTEIGANPDLQHQLVNKGVEVIEMTPLTPAKAMAYLYDRQLSTVLWECGGTLAAR 319

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPL 329
            I    V  ++ + +  ++G    PSP+
Sbjct: 320 AIADGTVQKVLAFIAPKIVGGITAPSPV 347


>gi|126030525|pdb|2G6V|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli
 gi|126030526|pdb|2G6V|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli
 gi|134105114|pdb|2OBC|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In
           Complex With A Substrate Analogue, Ribose 5-Phosphate
           (Beta Form), Bound To The Active Site Of The Reductase
           Domain
 gi|134105115|pdb|2OBC|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli In
           Complex With A Substrate Analogue, Ribose 5-Phosphate
           (Beta Form), Bound To The Active Site Of The Reductase
           Domain
          Length = 402

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 129/372 (34%), Positives = 186/372 (50%), Gaps = 22/372 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   D  + + AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  
Sbjct: 26  IQGQDEYYXARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRX 85

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE+A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV    DP+ +V+GRGL  L Q 
Sbjct: 86  AGEKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASXQDPNPQVAGRGLYRLQQA 145

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V   +  SE +     +L R      +I LK+  S D     A   S  IT   ++ 
Sbjct: 146 GIDVSHGLXXSEAEQLNKGFLKRXRTGFPYIQLKLGASLDGRTAXASGESQWITSPQARR 205

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKL 230
            V LLRAQS AIL    TVLADDP LT R + L E +           P+RI++D   ++
Sbjct: 206 DVQLLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRV 265

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTS 289
           +   +I++          T+ D        R   + I          +L   +G+  + S
Sbjct: 266 TPVHRIVQQPGET-WFARTQEDSREWPETVR--TLLIPEHKGHLDLVVLXXQLGKQQINS 322

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRD 344
           + VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      
Sbjct: 323 IWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIR 381

Query: 345 YFGSDVCLEYIG 356
           + G DVCL  +G
Sbjct: 382 HVGPDVCLHLVG 393


>gi|153828188|ref|ZP_01980855.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 623-39]
 gi|229522216|ref|ZP_04411633.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae TM 11079-80]
 gi|148876277|gb|EDL74412.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 623-39]
 gi|229341141|gb|EEO06146.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae TM 11079-80]
          Length = 367

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/339 (34%), Positives = 178/339 (52%), Gaps = 27/339 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +AGE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+G+G+Q L
Sbjct: 61  MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120

Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI V+  ++E++ +     +L R      ++ LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R + L               P+R+ILD  
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-- 285
            +L             P + + +   PVL +A     + I     +   + L  L+ +  
Sbjct: 241 HQLH------------PELALYQTPSPVLRVASENAELCISAEHGKLDLRELLALLAQQH 288

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            V  + VE G+ +A S I  +LVD IILY +  ++G  G
Sbjct: 289 NVNQVWVEAGSQLAKSLIEQKLVDEIILYLAPKLMGSDG 327


>gi|309780821|ref|ZP_07675562.1| riboflavin biosynthesis protein RibD [Ralstonia sp. 5_7_47FAA]
 gi|308920503|gb|EFP66159.1| riboflavin biosynthesis protein RibD [Ralstonia sp. 5_7_47FAA]
          Length = 370

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/329 (35%), Positives = 172/329 (52%), Gaps = 10/329 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S FD   M  AL  +   +  T+ NP V C+IV+D  VIG G T   G  HAE+QA+++A
Sbjct: 3   SDFDHAMMQRALALAEKGLFTTTPNPRVGCVIVRDDTVIGEGYTQPAGQDHAEIQAIKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G++ RGATAYVTLEPCSH+GR+PPCA  ++E GI RVV  ++DP+  VSGRGLQ L 
Sbjct: 63  QSRGQDVRGATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPAVSGRGLQKLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             G+ V   ++E E +     +++R       + +K+  S D    +    S  IT   +
Sbjct: 123 DAGVDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITEAEA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +N  H  RA++ AIL GIGTV  D+P LT R        P R+++D    + LD+ I+  
Sbjct: 183 RNDGHRWRARACAILTGIGTVREDNPRLTVRAVNTPRQ-PRRVLIDSALDVPLDAHILTA 241

Query: 240 -ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294
                P +I     +     A  ++   +I         DL  +L  L  R +  L VE 
Sbjct: 242 DGHHEPTLIFAAQPEAGRMRALSERGAEVILLPNAAGKVDLAAVLRELGRREINELHVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           G  +  S +   LVD +++Y +  V+G G
Sbjct: 302 GFKLNGSLLREGLVDEVLVYLAPKVLGSG 330


>gi|159903849|ref|YP_001551193.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. MIT 9211]
 gi|159889025|gb|ABX09239.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. MIT 9211]
          Length = 365

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/320 (34%), Positives = 183/320 (57%), Gaps = 7/320 (2%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +M  A + ++   G T+ NP V  +++  D ++IG G  +  G PHAEV+AL +AG+ A+
Sbjct: 14  WMQRAFQLAQLADGETNPNPLVGAVVLDPDKLLIGEGFHSKAGSPHAEVEALRQAGDAAK 73

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           G T  VTLEPC HYG +PPC + IIE G+ RVVV + DPD RVSG G++ L + GI ++ 
Sbjct: 74  GGTLLVTLEPCCHYGLTPPCTKTIIESGVSRVVVGLQDPDPRVSGNGIRLLKEAGIEVIT 133

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            +++ E      A++ R    R    LK+A+S D   G++   S  IT   ++ +VH LR
Sbjct: 134 GILKEEISFQNRAFIFRIKTGRPWGILKLAMSFDGRTGLSNGKSKWITSQEAREKVHALR 193

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           A+ DA+++G GT+ ADDP LT R  GL+   P+R++      L + ++I +T   A  ++
Sbjct: 194 AKCDAVIIGGGTLRADDPLLTSR--GLRNPEPLRVVFSQSLSLPIGAQIWRTE-SAKTLV 250

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
              N++ +  +    +N+  +     + ++LL  L  +G   +L E G ++A S I    
Sbjct: 251 AFSNENALPLIQELPENVEKLKLHESNPRELLEELAKKGCNRILWECGPSLATSAIKQNC 310

Query: 308 VDSIILYRSQIVIGEGGIPS 327
           V  I+++ +  ++  GG+P+
Sbjct: 311 VQEIVIFMAPKLL--GGLPA 328


>gi|74310983|ref|YP_309402.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Shigella sonnei Ss046]
 gi|73854460|gb|AAZ87167.1| bifunctional pyrimidine deaminase/reductase in pathway of
           riboflavin synthesis [Shigella sonnei Ss046]
          Length = 367

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 192/371 (51%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 QRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEH 242

Query: 235 KIIK----TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++    T         +E  + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWFARTQEDSSEWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|327484786|gb|AEA79193.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
           cholerae LMA3894-4]
          Length = 365

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 175/335 (52%), Gaps = 26/335 (7%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A+ +A
Sbjct: 3   TSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+G+G+Q L   G
Sbjct: 63  GELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V+  ++E++ ++    +L R      ++ LK+A S D    +A   S  IT   ++  
Sbjct: 123 IEVEVGLLEADARVLNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPAARKD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLS 231
           V   RAQ+ AIL    TVLAD+  L  R   L               P+R+ILD   +L 
Sbjct: 183 VQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQHQLH 242

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR--GVTS 289
                       P + + +   PVL +A     + I     +   + L  L+ +   V  
Sbjct: 243 ------------PELALYQTPSPVLRVASENAELCISAEHGKLDLRELLALLAQQHNVNQ 290

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           + VE G+ +A S I  +LVD IILY +  ++G  G
Sbjct: 291 VWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDG 325


>gi|56751317|ref|YP_172018.1| riboflavin biosynthesis protein RibD [Synechococcus elongatus PCC
           6301]
 gi|56686276|dbj|BAD79498.1| riboflavin biosynthesis protein RibD [Synechococcus elongatus PCC
           6301]
          Length = 368

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 105/320 (32%), Positives = 175/320 (54%), Gaps = 3/320 (0%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S  D ++M   L  +    G T+ NP V C+IV+   ++G G     G PHAEV AL +
Sbjct: 1   MSDRDRQYMQRCLELAAQAAGQTAPNPMVGCIIVQGEEIVGEGFHPAAGQPHAEVFALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ ARGAT YV LEPC+HYGR+PPC++ ++  G++RVVV + DPD RV+G G+  L Q 
Sbjct: 61  AGDRARGATLYVNLEPCNHYGRTPPCSEAVVAAGLKRVVVGMVDPDPRVTGGGIARLQQA 120

Query: 123 GIIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V   +E    +    A++ R  ++R    LK A++ D  I  +   S  ++   S+ 
Sbjct: 121 GIEVTVGVEQAACEQMNEAFVWRVTQRRPFGILKYAMTLDGRIAASTGHSAWVSSPESRR 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           QVH LR+Q DA++VG  TV  D+P LTC  + + +  P+R+++     L L++ + +T +
Sbjct: 181 QVHSLRSQVDAVIVGGNTVRLDNPRLTC--HDISDRHPLRVVMSRRLDLPLEANLWQTDI 238

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
              ++   E  D         + + ++        ++   L  RG+++LL E G  +A +
Sbjct: 239 APTLVFTEETADRDRWRKLEDQGVEVVVRSPLTPSEVSAELFNRGLSTLLWECGGTLAAA 298

Query: 302 FINSRLVDSIILYRSQIVIG 321
            +   L+  ++ + +  +IG
Sbjct: 299 ALREGLIQKLLAFIAPKLIG 318


>gi|89070868|ref|ZP_01158107.1| riboflavin biosynthesis protein RibD [Oceanicola granulosus
           HTCC2516]
 gi|89043556|gb|EAR49766.1| riboflavin biosynthesis protein RibD [Oceanicola granulosus
           HTCC2516]
          Length = 362

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/330 (37%), Positives = 182/330 (55%), Gaps = 9/330 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++  D RFM+ AL   R  +G T  NPSV C++V+DG ++ R  TA GG PHAE++AL  
Sbjct: 1   MNEADGRFMALALGLGRQGLGRTWPNPSVGCVLVRDGRILARARTADGGRPHAEMRALAA 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A  + RGATAYVTLEPC+H G +P CA  +   G+ RVV+   D D R +G+G+  L   
Sbjct: 61  A--DPRGATAYVTLEPCAHVGETPACASELARAGVARVVIGCADADARTAGQGVAILRAA 118

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ V   + E+E +     +L+R    R  +TLK+A S D  I  A   S  ITG  ++ 
Sbjct: 119 GVAVTTGVREAEARALHAGFLSRVERGRPALTLKLAASLDGRIATATGESQWITGTEARR 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH LRA+ DA++VG GT  ADDP LT R  G+    P+R+++     L  D ++  TA 
Sbjct: 179 HVHALRARHDAVMVGAGTARADDPALTVRGLGIARQ-PVRVVVSRRLDLPRDGRLAATAR 237

Query: 242 LAPVIIVTEND-DPVLALAFRKKNINIIYC--DCRDL--KKLLTILVGRGVTSLLVEGGA 296
             P+ +    D       A+      ++ C  D   L  + +L  L   G+TS+  EGG 
Sbjct: 238 DVPLWLCHGPDAAAASRAAWEAAGARLLPCAVDHGQLAPESVLAALGAAGLTSVFCEGGG 297

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            +A S + + LVD ++ Y + +V+G  G+P
Sbjct: 298 GLAASLLAADLVDELVAYSAGLVLGAEGLP 327


>gi|317497909|ref|ZP_07956219.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316894890|gb|EFV17062.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 366

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 126/359 (35%), Positives = 188/359 (52%), Gaps = 20/359 (5%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
            +M  A+  ++   G T+ NP V  +IVKD  VIG G     G  HAE  AL+   E+ +
Sbjct: 4   EYMRRAIELAKKGCGYTNPNPLVGAVIVKDQKVIGEGYHEKIGGLHAERNALKNCIEDPK 63

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           GA  YVTLEPC HYG++PPC + +IE GI++V V   DP+ +V+G G++ L+  GI  + 
Sbjct: 64  GAEIYVTLEPCCHYGKTPPCTEALIEAGIKKVYVGNLDPNPKVAGGGIKILNDHGIETET 123

Query: 129 -MMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            ++E E      IF H Y+   +    +  LK A++ D  I  A   S  ITG  ++  V
Sbjct: 124 GILEEECRQLNDIFFH-YIQNDI---PYTALKYAMTLDGKIATATGESKWITGEEARRHV 179

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H LR Q  AI+ GIGTVLADDP L  R+     + P+R+I D + ++S  S I+KTA   
Sbjct: 180 HTLRHQYAAIMAGIGTVLADDPMLNARIE--HGNDPIRVICDSNLRISEGSNIVKTAREI 237

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVA 299
           P II T + D        +K   I+    +D    +K++L  L    + S+LVEGG  + 
Sbjct: 238 PTIIATISKDQEKIAKLEQKGCKILKTSEQDGKVNVKEVLKQLRNMEIDSVLVEGGGILN 297

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
            S I +  V  +  Y +  + G     +P+E   +E+      F  ++    G+D+ LE
Sbjct: 298 ESLIKNDCVHKVYAYIAPKLFGGEKAKTPVEGKGIERIQEALVFDELKATPLGNDILLE 356


>gi|296123695|ref|YP_003631473.1| riboflavin biosynthesis protein RibD [Planctomyces limnophilus DSM
           3776]
 gi|296016035|gb|ADG69274.1| riboflavin biosynthesis protein RibD [Planctomyces limnophilus DSM
           3776]
          Length = 401

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 128/375 (34%), Positives = 186/375 (49%), Gaps = 41/375 (10%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  AL  +R  VG    NP+V  ++V + + ++G G     G PHAEV AL +AGE+ARG
Sbjct: 10  MEYALMLARRGVGFVEPNPAVGAVVVDEHLQLLGEGWHEKFGGPHAEVHALAKAGEKARG 69

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           AT Y TLEPCSH+G++PPCA  +I  GIR V   V DP   VSG+G++ L Q GI V+  
Sbjct: 70  ATIYTTLEPCSHFGKTPPCADALIAAGIRHVETAVIDPAAHVSGQGIEKLRQAGITVNVG 129

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
               + +  L  ++  Q   R  +  K A++ D  I      S  I+   S+  VH LR 
Sbjct: 130 RCADKARELLAPFVAFQCANRPWVHAKWAMTLDGKISTKTGHSHWISSEASRRTVHELRG 189

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQE---HSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           + DAI+VGIGTVL DDP+L  RL    +    +P RI+LD    +S  S++++TA   P 
Sbjct: 190 RVDAIVVGIGTVLVDDPQLNVRLPEDWKGPRRTPARIVLDSRLSISPHSQLVQTARKIPT 249

Query: 246 IIVTENDD-----------------------PVLALAFRKKNINIIYCDCRDLKKLLTIL 282
           I+ T   +                        V +L     +I + +  C  L  LL  +
Sbjct: 250 IVATIGPEHLQMAEREADWQQRRQVLEAAGCQVWSLPCGSTDIGLAHHPC--LIHLLDKM 307

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE----------EG 332
              G+  LLVEGGA +  SF++  L+D +  Y +  ++G     SP+           E 
Sbjct: 308 RAAGMAHLLVEGGARILGSFLDLDLIDEVHAYIAPKLVGGSAAASPIAGKGRMTIFDGEE 367

Query: 333 YLEKNFMCVRRD-YF 346
           +    F  + +D YF
Sbjct: 368 FASGEFTTIDKDAYF 382


>gi|148261112|ref|YP_001235239.1| riboflavin biosynthesis protein RibD [Acidiphilium cryptum JF-5]
 gi|146402793|gb|ABQ31320.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Acidiphilium
           cryptum JF-5]
          Length = 363

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 141/358 (39%), Positives = 200/358 (55%), Gaps = 10/358 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D   M  AL  +R  +G T+ NP+V C+IV+ G V+GRG TA GG PHAE +AL  AG+ 
Sbjct: 3   DLAHMRTALALARRGLGETAPNPTVGCVIVRGGRVVGRGRTAQGGRPHAETEALAAAGDA 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPC+H+GR+PPCA  ++  GI RVVV + DPD R +G GL  L + G+ +
Sbjct: 63  ARGATAYVTLEPCAHHGRTPPCADALVAAGIARVVVAMTDPDERTNGAGLSRLREAGLEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V+ +  +E       +  R  E R  +TLK+A S D  I      S  ITG  ++   H 
Sbjct: 123 VEGIGGAEAAEINAGFCKRIREGRPLVTLKLATSLDGQIATRTGASQWITGAAARQAAHA 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR   DA++VG+GTVLADDPELTCRL G +    +R+I+D H ++ LD ++++ A   P+
Sbjct: 183 LRGTHDAVMVGVGTVLADDPELTCRLEGFRSTPVIRLIVDSHLRIPLDGRLVRGAADHPL 242

Query: 246 IIV-TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300
            IV  +  DP    A       +          DL   L ++   G+T +L EGG  +A 
Sbjct: 243 WIVHRDGADPARRAALLDLGARLFEVPAAPVGIDLAAALAVVGAAGLTRVLAEGGGTLAA 302

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           + I + LVD +  + + +VIG+ GI +     +EE      F  +     G D+   Y
Sbjct: 303 ALIRADLVDRLEWFTAPVVIGDDGIGAVAGFGVEELGRAARFTRIDASVCGGDIRTRY 360


>gi|212212876|ref|YP_002303812.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Coxiella
           burnetii CbuG_Q212]
 gi|212011286|gb|ACJ18667.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Coxiella
           burnetii CbuG_Q212]
          Length = 354

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/332 (34%), Positives = 175/332 (52%), Gaps = 10/332 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  SS D  ++  AL  +    G  + NPSV  ++VKD  +I  G     G PHAEV+A+
Sbjct: 1   MNDSSLD--YLKKALSLAEIRRGFCAPNPSVGAVVVKDDKIISTGFHKRSGLPHAEVEAI 58

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           +  G++ARGA  YVTLEPC H+G++PPC   II+ GI+ V   + DP++ V G+G++ L 
Sbjct: 59  KSLGDKARGAALYVTLEPCCHFGKTPPCTDLIIQSGIKAVYYGLHDPNLAVCGKGIEQLQ 118

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           + G+    +   E   F  +Y      KR  +T K+A+S D  I       V +TG   +
Sbjct: 119 RAGVNCFLIELPEINAFYESYRYWIKHKRPWVTAKLALSLDGKIAGNEGKPVRLTGEGLR 178

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              H  R +SDA+L  I T+L DDP+L  RL G +   P+  ILD H +L L++ I +TA
Sbjct: 179 QYTHEWRKKSDALLTTINTILTDDPKLNVRLQGEEIKKPI-YILDTHLRLPLNALIHQTA 237

Query: 241 LLAPVIIVTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295
               +I+   N+ D        +KNI  I    R    DL ++L ++   G+  L +E G
Sbjct: 238 --ESIIVFHGNEADKKQQQRLMQKNIRCIEIARRSEGLDLNEVLDVIGNDGIHDLWIEAG 295

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
                SF+   L++  ++Y +  ++G   +P+
Sbjct: 296 GTCFQSFLKENLINRALIYIAPKILGSTAMPA 327


>gi|229528728|ref|ZP_04418118.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae 12129(1)]
 gi|229332502|gb|EEN97988.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae 12129(1)]
          Length = 367

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/339 (34%), Positives = 177/339 (52%), Gaps = 27/339 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +AGE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+G+G+Q L
Sbjct: 61  MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120

Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI V+  ++E++ +     +L R      ++ LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R   L               P+R+ILD  
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-- 285
            +L             P + + +   PVL +A     + I     +   + L  L+ +  
Sbjct: 241 HQLH------------PELALYQTPSPVLRVASENAELCISAEHGKLDLRELLALLAQQH 288

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            V  + VE G+ +A S I  +LVD IILY +  ++G  G
Sbjct: 289 NVNQVWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDG 327


>gi|157369315|ref|YP_001477304.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Serratia proteamaculans 568]
 gi|157321079|gb|ABV40176.1| riboflavin biosynthesis protein RibD [Serratia proteamaculans 568]
          Length = 369

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/336 (37%), Positives = 179/336 (53%), Gaps = 26/336 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     T+ NP+V C+IV+DG ++G G     G PHAEV AL  AGE+
Sbjct: 4   DEFYMARAFELARLGRFTTAPNPNVGCVIVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q G+ V
Sbjct: 64  ARGATAYVTLEPCSHHGRTPPCADALVAAGVARVVAAMQDPNPEVAGRGLYKLQQAGLDV 123

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R      ++ LK+  S D    MA   S  IT   ++  V  
Sbjct: 124 RHGLMLAEAESVNLGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L   +           P+RIILD   +++   
Sbjct: 184 LRAQSAAILSTSATVLADDPSLTVRWDELDAETQSIYPRENLRQPLRIILDSQNRVTPQH 243

Query: 235 KIIKT------ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           ++++       A L P   +   D  V  L F      +      DL  ++  L  R V 
Sbjct: 244 RVVQQPGQTWLARLQPDEQIWPQD--VEQLTFPAHGGGV------DLVVMMMQLAKRQVN 295

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           S+ VE GA +A + + + LVD +ILY +  ++G+ G
Sbjct: 296 SIWVEAGAQLAGALLQAGLVDELILYIAPKLLGDNG 331


>gi|30021491|ref|NP_833122.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
           cereus ATCC 14579]
 gi|29897046|gb|AAP10323.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
           cereus ATCC 14579]
          Length = 302

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 108/292 (36%), Positives = 163/292 (55%), Gaps = 8/292 (2%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL  ++   G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ RG
Sbjct: 7   YMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQVRG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           AT YVTLEPCSH+GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  
Sbjct: 67  ATIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVG 126

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + E E K     +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R 
Sbjct: 127 VCEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRN 186

Query: 189 QSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           ++ AILVG  TV  D+P LT R+ NG    +P+RIILD   ++ +++ ++        I 
Sbjct: 187 ENAAILVGANTVQKDNPSLTTRIPNG---RNPIRIILDSTLRIPMEANVVTDGEAPTWIF 243

Query: 248 VTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGA 296
            T N      +A     + +         +L ++L +L  +GV+SLLVEGG 
Sbjct: 244 TTSNHAAKKKIALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLVEGGG 295


>gi|296283379|ref|ZP_06861377.1| riboflavin-specific deaminase/reductase [Citromicrobium
           bathyomarinum JL354]
          Length = 323

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 128/320 (40%), Positives = 166/320 (51%), Gaps = 46/320 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DAR++SAA R S      ++ NP+V C+IV+ G V+GRG T  GG PHAE  ALE AG+ 
Sbjct: 8   DARWLSAAARLSLRGRPASAPNPAVGCVIVQAGRVVGRGWTQAGGRPHAEAMALEMAGDA 67

Query: 67  ARGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           A GA  Y TLEPC+H   R P C   +IE    RVV+   DPD R +G+G++ L   GI 
Sbjct: 68  ATGADVYATLEPCAHQSPRGPACTDRLIEARPARVVIGQIDPDPRTAGQGIERLHAAGID 127

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +        L  YLTR    R H+TLK+A+S D  I +A   S  ITG  ++  VH 
Sbjct: 128 AVLLDCPHSAASLAGYLTRAALGRPHVTLKLAMSLDGCIALADGTSQWITGEAARAHVHS 187

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA--LLA 243
            RA +DAILVG GT  AD P L  R+ GL++ SP R +        L S+ I+ A  + A
Sbjct: 188 RRALADAILVGGGTWRADSPRLDVRVPGLEDRSPARWV--------LTSQPIEGAQTIAA 239

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           PV I T               I   Y                    L VEGGA  A SF+
Sbjct: 240 PVDIAT---------------IPAQY--------------------LYVEGGAQTAASFL 264

Query: 304 NSRLVDSIILYRSQIVIGEG 323
            + LVD + +YR+ I+IG+G
Sbjct: 265 EADLVDRLEIYRAPILIGDG 284


>gi|83746190|ref|ZP_00943244.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Ralstonia solanacearum UW551]
 gi|207744096|ref|YP_002260488.1| riboflavin biosynthesis bifunctional protein ribd :
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Ralstonia solanacearum IPO1609]
 gi|83727156|gb|EAP74280.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Ralstonia solanacearum UW551]
 gi|206595500|emb|CAQ62427.1| riboflavin biosynthesis bifunctional protein ribd :
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Ralstonia solanacearum IPO1609]
          Length = 370

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 121/329 (36%), Positives = 173/329 (52%), Gaps = 10/329 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S FD   M  AL  +   +  T+ NP V C++V+D  +IG G T   G  HAE+QA+++A
Sbjct: 3   SDFDHAMMQRALALAENGLFTTTPNPRVGCVLVRDDTIIGEGFTQPPGQDHAEIQAIKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G + RGATAYVTLEPCSH+GR+PPCA  ++E GI RVV  ++DP+  VSGRGLQ L 
Sbjct: 63  QARGHDVRGATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPAVSGRGLQKLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI V   ++E E +     +++R       + +K+  S D    +    S  IT   +
Sbjct: 123 EAGIDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITEAEA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +N  H  RA++ AIL GIGTV  D+P LT R        P RI++D    + LD+ I+  
Sbjct: 183 RNDGHRWRARACAILTGIGTVREDNPRLTVRAIPTPRQ-PRRILIDSALDVPLDAHILTA 241

Query: 240 -ALLAPVIIVTENDDPVLALAFRKKNINIIY---CDCR-DLKKLLTILVGRGVTSLLVEG 294
                P +I     +     A  K    +I     D + DL  +L  L  R +  L VE 
Sbjct: 242 DDHREPTLIFAARPEAGRMRALAKHGAEVILLPNADGKVDLPAMLRELGRREINELHVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           G  +  S +   LVD I++Y +  V+G G
Sbjct: 302 GYKLNGSLLREGLVDEILVYLAPKVLGSG 330


>gi|323693355|ref|ZP_08107571.1| riboflavin biosynthesis protein [Clostridium symbiosum WAL-14673]
 gi|323502599|gb|EGB18445.1| riboflavin biosynthesis protein [Clostridium symbiosum WAL-14673]
          Length = 370

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 121/365 (33%), Positives = 194/365 (53%), Gaps = 27/365 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M  AL  +R   GL + NP V  +IVK+G VIGRG     G PHAE  AL    E 
Sbjct: 4   DEKYMRMALSLARKGCGLAAPNPMVGAVIVKEGRVIGRGYHQKYGGPHAEQNALSSCTEP 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            +GA  YVTLEPC H G+ PPC + I+  GI RVVV   DP+  V G+G++ L + G+ +
Sbjct: 64  PQGAVMYVTLEPCCHSGKQPPCVKAILRAGISRVVVGSADPNPLVGGKGIRILREHGVSV 123

Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
            + ++  E     ++F H   T    +   + +K A++ D  I      S  ITG  +++
Sbjct: 124 TEDILREECAKLNEVFFHYIRT----EHPFVVMKYAMTMDGKIAAVTGESKWITGEAARH 179

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTA 240
            V  LR +  AI+ G+GTV++DDP LTCR  G++   +P+RII D   +    ++++ TA
Sbjct: 180 HVQKLRHRYTAIMAGVGTVISDDPLLTCR--GVRGGKNPVRIICDTRLRTPPAARVVATA 237

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
             AP +I T  DDP   + +++   +++    +    DL++L+  L  +G+ S+L+EGG 
Sbjct: 238 GQAPTVIATCCDDPERHMVYQEAGCSVLTVKEKNGHVDLRELMRKLGKQGIDSILLEGGG 297

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE--------EGYLEKNFMCVRRDYFGS 348
            +  + + S +V     Y +  ++G     +P+E        +G + KN   +R    G 
Sbjct: 298 TLNWAALESGIVQKTEAYIAPKLLGGETSKTPVEGAGFLSPGDGIVLKNSRIIR---LGE 354

Query: 349 DVCLE 353
           D  +E
Sbjct: 355 DFLIE 359


>gi|186475387|ref|YP_001856857.1| riboflavin biosynthesis protein RibD [Burkholderia phymatum STM815]
 gi|184191846|gb|ACC69811.1| riboflavin biosynthesis protein RibD [Burkholderia phymatum STM815]
          Length = 373

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 126/365 (34%), Positives = 188/365 (51%), Gaps = 25/365 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +   +  T  NP V C++VK+G VIG G T   G  HAE+QAL++A
Sbjct: 3   SQTDFVHMERALALAWRGLYTTDPNPRVGCVLVKNGEVIGEGFTQPAGRDHAEIQALKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G + +GATAYVTLEPCSH+GR+PPCA  +IE  + RVV  ++DP+ RVSGRGL  L 
Sbjct: 63  RKRGHDLQGATAYVTLEPCSHFGRTPPCANALIEAKLARVVAAMEDPNPRVSGRGLSMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI V   ++E++ +     +++R    R  + +K+A S D   G+    S  IT   +
Sbjct: 123 EAGIEVRCGLLENDARELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGESQWITSEAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +N  H  RA++ AIL GIGTV  D+P +T R        P R+++D   ++  D++I+  
Sbjct: 183 RNDGHAWRARASAILTGIGTVKEDNPRMTVRAVDTPRQ-PHRVLIDSQLEVPPDAQILAG 241

Query: 240 ALLAPVIIVTENDDPVL---ALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLV 292
              AP ++      P+L   A     +   I+         DL ++L  L  R V  L V
Sbjct: 242 ---APTLVFCSTLSPLLTERAAVLHDRGAEIVPLANENGKVDLPRMLEELGKREVNELHV 298

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI-------PSPLEEGYLEKNFMCVRRDY 345
           E G  +  S +    VD +++Y +  ++G   +       P  L +   +  F  V  D 
Sbjct: 299 EAGYKLNGSLLREGCVDELLVYVAPSLLGNDSMSMFNLAAPGSL-DARTQLEFHAV--DR 355

Query: 346 FGSDV 350
            GSDV
Sbjct: 356 IGSDV 360


>gi|311280696|ref|YP_003942927.1| riboflavin biosynthesis protein RibD [Enterobacter cloacae SCF1]
 gi|308749891|gb|ADO49643.1| riboflavin biosynthesis protein RibD [Enterobacter cloacae SCF1]
          Length = 368

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 122/331 (36%), Positives = 174/331 (52%), Gaps = 22/331 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP V C+IV+DG ++G G     G PHAEV AL  AG++
Sbjct: 3   DEVYMARALKLAQRGRFTTHPNPRVGCVIVRDGDIVGEGFHLRAGEPHAEVHALRMAGDK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q G+ V
Sbjct: 63  ARGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGVEV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R       + LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPWLQLKLGASLDGGTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R   L         QE+   P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWEELDADTQASYPQENLRQPVRIVIDSRNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I+            E+     D V  L     N  +      DL  L+  L  R + S+
Sbjct: 243 RIVHQPGETWFARTDEDSRQWPDGVSTLNIPAHNGQL------DLVLLMMQLGRRQINSV 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            VE G  +A + + + +VD +I+Y +  ++G
Sbjct: 297 WVEAGPRLAGALLQAGVVDELIVYVAPKLLG 327


>gi|237755714|ref|ZP_04584322.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692135|gb|EEP61135.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 371

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/325 (36%), Positives = 168/325 (51%), Gaps = 10/325 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
           +M  AL  ++   GLT  NP+V  +IVKDG +IG+G     G PHAE +A+++A   G +
Sbjct: 10  YMKIALDLAKIRKGLTHPNPTVGAVIVKDGKIIGKGYHTKAGMPHAEREAIKDAKEKGHD 69

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            +G+T +VTLEPC HYGR+PPC   IIE GI  VV+   D +  V G+G+  L   GI +
Sbjct: 70  LKGSTMFVTLEPCCHYGRTPPCTSAIIEEGISEVVIGALDQNPIVKGQGVNILKSHGIKV 129

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  ++E E +     + T   EKR  + LK+A S D  I      S  IT   S+   H 
Sbjct: 130 ITGVLEKECEKINEDFFTYIKEKRPFVHLKVAQSFDGKIATKIGDSKWITSEKSRQFAHQ 189

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR ++ AILVG  T L D+P LT R +   E  P R+++D   K+     I        V
Sbjct: 190 LRKEASAILVGTNTALKDNPALTVR-HVETEKQPARVLIDKKLKVPPTYNIYNNEAKTIV 248

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKK-----LLTILVGRGVTSLLVEGGAAVAH 300
           I     +   L     K+N+ I++ D  + +K     +L  L  R +  LLVEGG  V  
Sbjct: 249 ITSKLANQENLKRLSEKENVEIVFLDLDENEKFKIDDILNTLYEREIVHLLVEGGRGVIT 308

Query: 301 SFINSRLVDSIILYRSQIVIGEGGI 325
             I  R  D I ++ + ++IG  GI
Sbjct: 309 DLIKERKFDKISIFTAPLLIGNDGI 333


>gi|229524273|ref|ZP_04413678.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae bv. albensis VL426]
 gi|229337854|gb|EEO02871.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae bv. albensis VL426]
          Length = 367

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 117/339 (34%), Positives = 178/339 (52%), Gaps = 27/339 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +A E  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+G+G+Q L
Sbjct: 61  MRQAAELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120

Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI V+  ++E++ +     +L R      ++ LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R + L               P+R+ILD  
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-- 285
            +L             P + + +   PVL +A     + I   + +   + L  L+ +  
Sbjct: 241 HQLH------------PELALYQTPSPVLRVASENAELCISAENGKLDLRELLALLAQQH 288

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            V  + VE G+ +A S I  +LVD IILY +  ++G  G
Sbjct: 289 NVNQVWVEAGSQLAKSLIEQKLVDEIILYLAPKLMGSDG 327


>gi|86605105|ref|YP_473868.1| riboflavin biosynthesis protein RibD [Synechococcus sp. JA-3-3Ab]
 gi|86553647|gb|ABC98605.1| riboflavin biosynthesis protein RibD [Synechococcus sp. JA-3-3Ab]
          Length = 371

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 112/325 (34%), Positives = 176/325 (54%), Gaps = 3/325 (0%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M   L  +R      S NP VAC+IV+   V+G GV    G PHAEV AL++AG  
Sbjct: 6   DRQWMERCLSLARSTPQRPSPNPRVACVIVRGDQVVGEGVHLGAGQPHAEVLALQQAGSL 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YV LEPC+HYGR+PPC + I+  GIRRVVV + DP+  V+G+G++ L + G+ V
Sbjct: 66  AKGATLYVNLEPCNHYGRTPPCTEAILAAGIRRVVVGMQDPNPLVAGKGIRRLQEAGVEV 125

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E +     +    V+KR    LK A++ D     A   S  I+  +++  VH 
Sbjct: 126 TVGVLEQECQELNEGFAFAIVQKRCFGLLKYAMTLDGKSAAATGHSRWISNPLAREWVHR 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            RA  DA++VG GTV  D+P LTCRL       P+R++L     L   + + + A  AP 
Sbjct: 186 QRAWHDAVIVGSGTVWHDNPHLTCRLPDFHGSQPLRVVLSRSLNLPPLAHLWR-AEEAPT 244

Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           +++TE  +   L  +  K+ + +++ D     +   +L  RG  S L E G  +A + + 
Sbjct: 245 LVITEATEAHPLWGSLAKQGVELLHLDQVTPAQAAQVLFERGCLSALWECGGTLAWAALK 304

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPL 329
              +  +  + +  ++G    P+P+
Sbjct: 305 DGAIQKVAAFIAPKILGGADAPTPV 329


>gi|288941493|ref|YP_003443733.1| riboflavin biosynthesis protein RibD [Allochromatium vinosum DSM
           180]
 gi|288896865|gb|ADC62701.1| riboflavin biosynthesis protein RibD [Allochromatium vinosum DSM
           180]
          Length = 381

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 112/310 (36%), Positives = 170/310 (54%), Gaps = 12/310 (3%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGR 84
           T  NP V C++V+DG V+G G     G PHAE  AL +AGE AR AT YVTLEPCSH+GR
Sbjct: 32  TDPNPRVGCVLVRDGQVVGEGWHRRAGEPHAEPLALAQAGERARDATVYVTLEPCSHHGR 91

Query: 85  SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLT 143
           +PPCA+ +I  G+ RVV  + DP+ RV+GRG++ L Q GI VD   +ESE +     ++ 
Sbjct: 92  TPPCAEALIAAGVARVVCAMVDPNPRVAGRGVERLRQAGISVDVGCLESEARALNPGFVK 151

Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203
           R  + R ++  K+A S D    +A   S  IT   ++  V   RA S AI+ G+GTVL D
Sbjct: 152 RYEQGRPYVRCKLAASLDGRTALATGESKWITSEAARRDVQRWRAGSSAIVTGLGTVLGD 211

Query: 204 DPELTCRLNGLQ---------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD- 253
           DP L  RL   +            P R+++D H++    ++++       ++ +   D  
Sbjct: 212 DPSLNVRLTAAELSGMAADDPVRQPCRVVVDSHWRTPPTARLLGLPGRTLIVGIGPRDTA 271

Query: 254 PVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
                A   + I +     R DL  L+  L  R V  +L+E G+ ++ + + + LVD I+
Sbjct: 272 AAALEAAGAELIRLPEQAGRVDLAALMAELARREVNEVLLEAGSTLSGAAVRAGLVDEIL 331

Query: 313 LYRSQIVIGE 322
           LY++  ++G+
Sbjct: 332 LYQAPCLMGQ 341


>gi|331656468|ref|ZP_08357430.1| riboflavin biosynthesis protein RibD [Escherichia coli TA206]
 gi|315299580|gb|EFU58828.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 16-3]
 gi|331054716|gb|EGI26725.1| riboflavin biosynthesis protein RibD [Escherichia coli TA206]
          Length = 367

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATVYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++           E+     + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|332094564|gb|EGI99610.1| riboflavin biosynthesis protein RibD [Shigella boydii 5216-82]
          Length = 367

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 129/367 (35%), Positives = 188/367 (51%), Gaps = 20/367 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LR+QS AIL    TVLADDP LT R + L E +           P+RI++D   +++   
Sbjct: 183 LRSQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPGH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           +I++             +D        +  +   +    DL  L+  L  + + S+ VE 
Sbjct: 243 RIVQQP--GETWFARTQEDSREWPETERTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349
           G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      + G D
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|255038066|ref|YP_003088687.1| riboflavin biosynthesis protein RibD [Dyadobacter fermentans DSM
           18053]
 gi|254950822|gb|ACT95522.1| riboflavin biosynthesis protein RibD [Dyadobacter fermentans DSM
           18053]
          Length = 354

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 125/336 (37%), Positives = 183/336 (54%), Gaps = 20/336 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALEEAGE 65
           D ++M  AL+ + +  G  S NP V C+IV DG +IG G   AYGG PHAEV+A+E+   
Sbjct: 4   DNQWMERALQLAGYGRGAVSPNPMVGCVIVHDGRIIGEGWHRAYGG-PHAEVRAIEDT-- 60

Query: 66  EARG-------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           +ARG       ATAYVTLEPCSH G++PPCA  ++   ++RVV+C +DP+  VSGRG++ 
Sbjct: 61  DARGNSHLLPQATAYVTLEPCSHTGKTPPCADLLVSRRLKRVVICNNDPNPLVSGRGIRR 120

Query: 119 LSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L + GI V+  + E+ G      + T    +R ++ LK A + D  +G      + I+G 
Sbjct: 121 LREAGIEVECGVAEAAGTELNKRFFTAMTLQRPYVILKWAETADGFLGYQAGSPLQISGT 180

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
           +S  +VH  R + DAI+VG  T L D+P L  R       +P+RI+ D H +L     + 
Sbjct: 181 LSNMRVHQWRTEEDAIMVGYKTALMDNPRLNVR--HWAGRNPVRIVTDRHLQLPPQLHLF 238

Query: 238 KTALLAPVIIVT-ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG---RGVTSLLVE 293
             +    V+    E D P     +       +  + + ++++L IL G   R V SLLVE
Sbjct: 239 DQSQSTVVVSYDLETDIPSDPERYLAPTTAYMKIEPK-VEEILQILQGLHRRKVQSLLVE 297

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG-GIPSP 328
           GGAAV ++F    L D I   +  I IG G   P+P
Sbjct: 298 GGAAVINAFFECGLWDEIRRCQGGITIGNGVAAPAP 333


>gi|153209016|ref|ZP_01947210.1| riboflavin biosynthesis protein RibD [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165920291|ref|ZP_02219563.1| riboflavin biosynthesis protein RibD [Coxiella burnetii RSA 334]
 gi|212219122|ref|YP_002305909.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Coxiella
           burnetii CbuK_Q154]
 gi|120575553|gb|EAX32177.1| riboflavin biosynthesis protein RibD [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165916847|gb|EDR35451.1| riboflavin biosynthesis protein RibD [Coxiella burnetii RSA 334]
 gi|212013384|gb|ACJ20764.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Coxiella
           burnetii CbuK_Q154]
          Length = 354

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 113/332 (34%), Positives = 175/332 (52%), Gaps = 10/332 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  SS D  ++  AL  +    G  + NPSV  ++VKD  +I  G     G PHAEV+A+
Sbjct: 1   MNDSSLD--YLKKALSLAEIRRGFCAPNPSVGAVVVKDDKIISTGFHKRSGLPHAEVEAI 58

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           +  G++ARGA  YVTLEPC H+G++PPC   II+ GI+ V   + DP++ V G+G++ L 
Sbjct: 59  KSLGDKARGAALYVTLEPCCHFGKTPPCTDLIIQSGIKAVYYGLHDPNLAVCGKGIEQLQ 118

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           + G+    +   E   F  +Y      KR  +T K+A+S D  I       V +TG   +
Sbjct: 119 RAGVNCFLIELPEINAFYESYRYWIKHKRPWVTAKLALSLDGKIAGNEGKPVRLTGEGLR 178

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              H  R +SDA+L  I T+L DDP+L  RL G +   P+  ILD H +L L++ I +TA
Sbjct: 179 QYTHERRKKSDALLTTINTILTDDPKLNVRLQGEEIKKPI-YILDTHLRLPLNALIHQTA 237

Query: 241 LLAPVIIVTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295
               +I+   N+ D        +KNI  I    R    DL ++L ++   G+  L +E G
Sbjct: 238 --ESIIVFHGNEADKKQQQRLMQKNIRCIEIARRSEGLDLNEVLDVIGNDGIHDLWIEAG 295

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
                SF+   L++  ++Y +  ++G   +P+
Sbjct: 296 GTCFQSFLKENLINRALIYIAPKILGSTAMPA 327


>gi|330815405|ref|YP_004359110.1| Putative deaminase [Burkholderia gladioli BSR3]
 gi|327367798|gb|AEA59154.1| Putative deaminase [Burkholderia gladioli BSR3]
          Length = 384

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 119/336 (35%), Positives = 184/336 (54%), Gaps = 31/336 (9%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
           + D  +M+ AL  +   +  T+ NP V C+IVK GI+IG G T   G  HAEV+A+++A 
Sbjct: 18  ALDRAWMARALELAARGLYTTTPNPRVGCVIVKHGILIGEGYTQPAGHDHAEVRAMKDAR 77

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
             G E RGATAYVTLEPCSHYGR+PPCA+ ++E GI  VV  ++DP+ +VSGRG   L +
Sbjct: 78  ARGHELRGATAYVTLEPCSHYGRTPPCAKGLVEAGIATVVAAMEDPNPQVSGRGYAMLRE 137

Query: 122 KGIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI V   ++E E +     +++R    R  + +K+A S D    + G  S  ITG  ++
Sbjct: 138 AGIEVRGGVLEEEARELNIGFVSRMTRARPWVRMKMAASLDGRSALPGGASQWITGAAAR 197

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKT 239
              H  RA++ +IL GIGTV  DDP+L  R  G+     P R+++D    L  +++++  
Sbjct: 198 ADGHAWRARACSILTGIGTVRGDDPQLNVR--GIDTPRQPRRVLIDGRLDLPHEARLMAG 255

Query: 240 ALLAPVIIVTEND--------------DPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285
           A   P++   E D                V++LA  + ++        DL  +L  L  R
Sbjct: 256 A--PPLVFCGELDAPARARADALRARGAEVVSLANARGSV--------DLAAVLAELGCR 305

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           G   L VE G  ++ + + + LVD +++Y +  ++G
Sbjct: 306 GDNELHVEAGRTLSGALLRAGLVDELLVYVAPSLLG 341


>gi|319651135|ref|ZP_08005268.1| riboflavin specific deaminase [Bacillus sp. 2_A_57_CT2]
 gi|317397189|gb|EFV77894.1| riboflavin specific deaminase [Bacillus sp. 2_A_57_CT2]
          Length = 365

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 114/316 (36%), Positives = 172/316 (54%), Gaps = 4/316 (1%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
            +M  A+  +    G TS NP V  ++VK+G ++G G     G PHAEV A+  AGE+A+
Sbjct: 5   EYMELAISLAAATKGQTSPNPQVGAVVVKNGEILGMGAHLKAGTPHAEVHAIAAAGEKAK 64

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GA  YVTLEPCSH+GR+PPCA  II  GI RV +   DP+  VSG+G++ +   GI +V 
Sbjct: 65  GADIYVTLEPCSHFGRTPPCADLIINSGINRVFIASADPNPLVSGKGIERMQDAGIEVVT 124

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            +++ E       +      K  ++T+K A S D         S  IT   S+  VH LR
Sbjct: 125 GLLKEEADALNEPFFHFIKTKTPYVTIKAASSFDGKTAAKTGDSKWITSPESRQDVHRLR 184

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DAIL G+ T++ D+P LT RL    + +P+R++LD + ++  D+ +I+   +  +I 
Sbjct: 185 HEHDAILTGVNTIIHDNPLLTARLPQGGK-NPIRVVLDTNLRIPADANVIRDQSVKTIIF 243

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
                D   A   +K N  +      +  +K++L  L  R + +L VEGG+ +  SFINS
Sbjct: 244 TGCEIDRSKAEELKKYNTEVFSFSANEVPIKEVLRNLGERNIMTLFVEGGSEIHASFINS 303

Query: 306 RLVDSIILYRSQIVIG 321
                IILY +  +IG
Sbjct: 304 GFFQQIILYMAPKIIG 319


>gi|299138351|ref|ZP_07031530.1| riboflavin biosynthesis protein RibD [Acidobacterium sp. MP5ACTX8]
 gi|298599597|gb|EFI55756.1| riboflavin biosynthesis protein RibD [Acidobacterium sp. MP5ACTX8]
          Length = 387

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 122/343 (35%), Positives = 182/343 (53%), Gaps = 17/343 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M +   D R +  AL  ++  VGL S NP+V C++V+DG+V+G G   Y    HAE+ AL
Sbjct: 1   MSLLPHDERHLQRALDLAQEAVGLASPNPTVGCVLVRDGVVLGEGAHHYDERDHAEIAAL 60

Query: 61  EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           ++A   G   +GATAYVTLEPCSH GR+ PCA  +I  GI R VV   DP+  VSG GL 
Sbjct: 61  KQAASLGHTPQGATAYVTLEPCSHQGRTGPCADALIAAGIARCVVATVDPNPLVSGGGLA 120

Query: 118 WLSQKGIIV-----DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG---C 169
            L   GI V        +    +    A+      +R  +TLK AVS D  +  A     
Sbjct: 121 KLQAAGIEVVVADPASALAQRTRRLNDAFAHWIQHRRPFVTLKAAVSVDGKLAPAPSVRT 180

Query: 170 GSVP--ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPH 227
            + P  +TG  ++  VH LR + DAIL GIGTVLADDP LT R    +  S +R++LD  
Sbjct: 181 ANQPHWLTGEAARADVHRLRHEVDAILTGIGTVLADDPSLTDRSGLPRRRSLLRVVLDSD 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILV 283
            +  L+S+++++A    +++ +         A     + ++         +L+  L  L 
Sbjct: 241 LRTPLNSQLVRSAGSDLLLLCSRTAPADREAALSDCGVEVLRLSGSGGHLNLRAALDTLA 300

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            R + S+L+EGG+++  S ++  LVD + LY ++  +G   IP
Sbjct: 301 QRNIISVLIEGGSSLNGSLLHEGLVDKLTLYYAECELGLDAIP 343


>gi|320120555|gb|EFE28957.2| riboflavin biosynthesis protein RibD [Filifactor alocis ATCC 35896]
          Length = 364

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 130/369 (35%), Positives = 182/369 (49%), Gaps = 31/369 (8%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALEEAG 64
           F   +M  A+  ++   G  S NP V  +IVKD I+IG G  T YGG  HAE +AL+   
Sbjct: 3   FHETYMKTAIELAKKGEGYVSPNPLVGAVIVKDDIIIGSGYHTKYGGL-HAEREALKNCR 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
              +GA+ YVTLEPCSHYG+ PPCA  IIE GI  V +   DP+  V+G+G+Q L    I
Sbjct: 62  TSPKGASMYVTLEPCSHYGKQPPCALAIIESGIDTVYIGSSDPNPEVNGKGIQVLRDANI 121

Query: 125 -IVDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
            +V  +++ E       F H   T     R ++TLK A++ D  I      S  ITG  +
Sbjct: 122 KVVTGLLKEECDSLNTFFFHYIATN----RPYVTLKFAMTIDGKIASHSGKSQWITGESA 177

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           + QVH  R +  AI+VG+GTV  D+P L CR       SP+RII D   +  ++SKI++T
Sbjct: 178 RAQVHRDRKRYQAIMVGVGTVFQDNPVLNCRTKE-NPVSPIRIICDTKLRTPMNSKIVQT 236

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295
           +   P  + T   D      +     +I+    +    DL  L+  L   G+ SL VEGG
Sbjct: 237 SKEIPTYLATCCTDKSKHSPYEMYGCSILVTKQQNGHIDLNDLMQQLGKIGIDSLFVEGG 296

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIG---------EGGIPSPLEE-GYLEKNFMCVRRDY 345
             +  S +   LV+ I  Y    V+G           G  +P +   +   N MC     
Sbjct: 297 GTLNWSLLQENLVNHIQCYIGNKVLGGQSAKTAILGTGFDTPNDSPAFKLSNIMC----- 351

Query: 346 FGSDVCLEY 354
           F  D+ LEY
Sbjct: 352 FDEDILLEY 360


>gi|303258272|ref|ZP_07344279.1| riboflavin biosynthesis protein RibD [Burkholderiales bacterium
           1_1_47]
 gi|302859025|gb|EFL82109.1| riboflavin biosynthesis protein RibD [Burkholderiales bacterium
           1_1_47]
          Length = 363

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 114/329 (34%), Positives = 176/329 (53%), Gaps = 12/329 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S  D  +M  AL  ++        NP+V C+IVKD  +IG G T   G  HAEV AL +
Sbjct: 1   MSFSDCSYMRRALELAKKARFNCPPNPAVGCVIVKDRRIIGEGFTQKTGEAHAEVMALRD 60

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   GE   GAT YVTLEPCSHYGR+PPCA  +    + RVV  + DP+  V+G+GL+ L
Sbjct: 61  AASRGESVEGATVYVTLEPCSHYGRTPPCALALKNAKVARVVAALKDPNPLVAGKGLKML 120

Query: 120 SQKGIIVDRMMES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            + G+ V+  +E+ E +     +L RQ E    +  K+A+S D    +A   S  IT   
Sbjct: 121 EEAGVKVECGLEAEEAEEINRGFLKRQREGMPWVRTKMAMSVDGNTALANGKSQWITSEE 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H  R  S A+L G+GTVLAD+P++T R  G+    P+++++D +  L+ D KI +
Sbjct: 181 ARADGHFWRGISGAVLTGLGTVLADNPQMTARFEGVTRQ-PLKVVVDSNLSLNPDLKIFQ 239

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294
                  ++V    D V A  F  + + +I    +    DL+ L+  L  R +  + VE 
Sbjct: 240 G---GKTLLVCARYDIVRAENFESQGVEVIELPGKDGKVDLRALMRELAKREINDVHVEA 296

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GA +  +     L+D  ++Y + + +G+G
Sbjct: 297 GARLNGALAMEGLIDEYLIYVAPVFLGDG 325


>gi|300918206|ref|ZP_07134813.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 115-1]
 gi|300414657|gb|EFJ97967.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 115-1]
          Length = 367

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP LT R + L E +           P+RI++D   ++  + 
Sbjct: 183 QRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVMPEH 242

Query: 235 KIIK----TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++    T         +E  + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWFARTQEDSSEWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|331651348|ref|ZP_08352373.1| riboflavin biosynthesis protein RibD [Escherichia coli M718]
 gi|331051089|gb|EGI23141.1| riboflavin biosynthesis protein RibD [Escherichia coli M718]
          Length = 367

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 131/368 (35%), Positives = 190/368 (51%), Gaps = 28/368 (7%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+A+G
Sbjct: 6   YMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKG 65

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128
           ATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V   
Sbjct: 66  ATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHG 125

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  LRA
Sbjct: 126 LMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRA 185

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDSKII 237
           QS AIL    TVLADDP LT R + L E +           P+RI++D   +++ +  I+
Sbjct: 186 QSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHHIV 245

Query: 238 KTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
           +           E+     + V  L   +   ++      DL  L+  L  + + S+ VE
Sbjct: 246 QQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGS 348
            G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      + G 
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRHVGP 358

Query: 349 DVCLEYIG 356
           DVCL  +G
Sbjct: 359 DVCLHLVG 366


>gi|153811505|ref|ZP_01964173.1| hypothetical protein RUMOBE_01897 [Ruminococcus obeum ATCC 29174]
 gi|317501334|ref|ZP_07959537.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|149832246|gb|EDM87331.1| hypothetical protein RUMOBE_01897 [Ruminococcus obeum ATCC 29174]
 gi|316897298|gb|EFV19366.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 395

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 122/357 (34%), Positives = 190/357 (53%), Gaps = 21/357 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A++ ++   G T+ NP V  +IVKDG +IG G     G  HAE  A+    E 
Sbjct: 23  DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGKIIGEGYHKKYGELHAERNAIASLTES 82

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GA  YVTLEPC H+G++PPC + IIE  IR+VV+   DP+ +V+G+G+Q L + G+ +
Sbjct: 83  AEGAVIYVTLEPCCHHGKTPPCTEAIIEQKIRKVVIGSRDPNPKVAGKGVQMLREAGVTV 142

Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           V+  M  E      +F H Y+T    K  ++ +K A++ D  I      S  ITG  ++ 
Sbjct: 143 VEDFMREECDQLNPVFFH-YITT---KTPYVVMKYAMTLDGKIATKTGASKWITGESARK 198

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +V  +R Q   I+ GIGTVLADDP L  R+ G +  SP+RI+ D   ++   S+I+K+A 
Sbjct: 199 EVQHMRHQYMGIMAGIGTVLADDPMLNVRVEGWK--SPVRIVCDSKLRIPPGSQIVKSAE 256

Query: 242 LAPVIIV---TENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEG 294
               I+     +N    + +      +  IYC    +  DLKKL+  L  RG+ S+L+EG
Sbjct: 257 KYRTIVAYAEQKNAKEKIKI-LHTMGVETIYCPDEKNQIDLKKLMADLGNRGIDSILLEG 315

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           G  +  S + + +V  +  + +  + G     +P+E   +E     V   Y  +D+C
Sbjct: 316 GGTLNDSALRAGIVKEVQAFVAPKLFGGVAGKTPVEGIGVELPSEAVELKY--TDIC 370


>gi|331671959|ref|ZP_08372755.1| riboflavin biosynthesis protein RibD [Escherichia coli TA280]
 gi|331070948|gb|EGI42307.1| riboflavin biosynthesis protein RibD [Escherichia coli TA280]
          Length = 367

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 QRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++           E+     + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWFARTHEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|326404513|ref|YP_004284595.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Acidiphilium multivorum AIU301]
 gi|325051375|dbj|BAJ81713.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Acidiphilium multivorum AIU301]
          Length = 363

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 140/358 (39%), Positives = 198/358 (55%), Gaps = 10/358 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D   M  AL  +R  +G T+ NP+V C+IV+ G V+GRG TA GG PHAE +AL  AG+ 
Sbjct: 3   DLAHMRTALALARRGLGETAPNPTVGCVIVRGGRVVGRGRTAQGGRPHAETEALAAAGDA 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPC+H+GR+PPCA  ++  GI RVVV + DPD R +G GL  L + G+ +
Sbjct: 63  ARGATAYVTLEPCAHHGRTPPCADALVAAGIARVVVAMTDPDERTNGAGLSRLREAGLEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V+ +  +E       +     E R  +TLK+A S D  I      S  ITG  ++   H 
Sbjct: 123 VEGIGGAEAAEINAGFCKCIREGRPLVTLKLATSLDGQIATRTGASQWITGAAARQAAHA 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR   DA++VG+GTVLADDPELTCRL G +    +R+I+D H ++ LD ++++ A   P+
Sbjct: 183 LRGTHDAVMVGVGTVLADDPELTCRLEGFRSTPVIRLIVDSHLRIPLDGRLVRGAADHPL 242

Query: 246 IIV-TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300
            IV  +  DP    A       +          DL   L  +   G+T +L EGG  +A 
Sbjct: 243 WIVHRDGADPARRAALLDLGARLFEVPAAPVGIDLAAALAAVGEAGLTRVLAEGGGTLAA 302

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           + I + LVD +  + + +VIG+ GI +     +EE      F  +     G D+   Y
Sbjct: 303 ALIRADLVDRLEWFTAPVVIGDDGIGAVAGFGVEELGRAARFTRIDASVCGGDIRTRY 360


>gi|92114703|ref|YP_574631.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Chromohalobacter salexigens DSM 3043]
 gi|91797793|gb|ABE59932.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Chromohalobacter salexigens DSM 3043]
          Length = 380

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 112/329 (34%), Positives = 181/329 (55%), Gaps = 13/329 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ +R     T  NP V C++V  G ++G G  AY G PHAEV AL EAG+ A GA
Sbjct: 10  MARALQLARHGCYTTHPNPRVGCVVVNAGRIVGEGYHAYAGGPHAEVHALREAGDAAAGA 69

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129
           T YVTLEPCSH+GR+PPCAQ +I+ G+RRVVV + DP+ +V+GRG+  L + GI VD  +
Sbjct: 70  TVYVTLEPCSHHGRTPPCAQALIDAGVRRVVVAMVDPNPQVAGRGVAMLREAGIEVDVGL 129

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           + ++ +     ++ R  +    + LK+A+S D    MA   S  ITG  ++ +V  LRA+
Sbjct: 130 LATDAEALNVGFVKRMRDGLPFVRLKMAMSLDGRTAMASGESQWITGASARTEVQRLRAR 189

Query: 190 SDAILVGIGTVLADDPELTCRLNGL--------QEHSPMRIILDPHFKLSLDSKIIKTAL 241
           + A++ G+ +V+ D+  LT R + L            P+R+++D   +L L +  ++   
Sbjct: 190 ASAVMTGVDSVIFDNSRLTVRADQLALEDGETIARRQPLRVVVDSRLRLPLAAACLREPG 249

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILV-GRGVTSLLVEGGAA 297
              V   T ++    AL+     + ++  D     DL+ LL  L        +L+E GA 
Sbjct: 250 RTLVATCTPDEARREALSRAGAEVLMLPADEGGRVDLRALLAYLARDEQCNEVLLETGAT 309

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           +A + ++   +D + L+ +  ++G    P
Sbjct: 310 LAGAMLDLEAIDEMHLFVAPTLLGGEARP 338


>gi|300113757|ref|YP_003760332.1| riboflavin biosynthesis protein RibD [Nitrosococcus watsonii C-113]
 gi|299539694|gb|ADJ28011.1| riboflavin biosynthesis protein RibD [Nitrosococcus watsonii C-113]
          Length = 371

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 114/331 (34%), Positives = 182/331 (54%), Gaps = 14/331 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++  +  T  NP V C++V+ G ++G G     G  HAE+ AL +AG  
Sbjct: 3   DRAYMVRALKLAQRGLFTTDPNPRVGCVLVRGGEIVGEGWHQQAGDSHAEINALRQAGIR 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+G+T YVTLEPC H GR+PPC + +IE G+ RVV  + DP  +V+ +GL  L + G+ V
Sbjct: 63  AQGSTCYVTLEPCCHRGRTPPCTEALIEAGVARVVAAMGDPHPKVASQGLAQLREAGLQV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  +++ E +     ++ R V+ R  +  K+A+S D    +A   S  IT   ++  V  
Sbjct: 123 EHGLLQEEAEALNVGFVQRLVQGRPWVRCKLAMSLDGATALASGESRWITASPARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-------PMRIILDPHFKLSLDSKIIK 238
            RA+S AIL GIGTVL DDP L  R   L + +       P+R+ILD    +S+ ++++ 
Sbjct: 183 WRARSSAILTGIGTVLEDDPSLNVRYEELGDEAPLGFNRQPLRVILDRQLAISVQARLL- 241

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294
            +L  PV+IV  +     A + R + + +I         DL  L+  L  R +  L VE 
Sbjct: 242 -SLPGPVMIVCADAASSKAESLRCRGVEVISLPVTPQGLDLMALMAALAAREINELHVEC 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           GA +A S + + L+D ++LY +  ++GE  +
Sbjct: 301 GARLAGSLLQAGLMDELVLYIAPKLMGEAAL 331


>gi|146276894|ref|YP_001167053.1| riboflavin biosynthesis protein RibD [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555135|gb|ABP69748.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 356

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 130/320 (40%), Positives = 183/320 (57%), Gaps = 7/320 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ ALR     +G T  NP+V C+IVK G V+GRG T  GG PHAE  AL EAG  A GA
Sbjct: 1   MAHALRLGARGLGRTWPNPAVGCVIVKAGRVVGRGWTRPGGRPHAEPVALAEAGAAALGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DRM 129
           TAYVTLEPC+H+GR+PPCA+ +   G+ RVV    DPD RV+GRG   L   GI V + +
Sbjct: 61  TAYVTLEPCAHHGRTPPCAEALAAAGVARVVTATGDPDPRVAGRGHALLHAAGIAVTEGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E+E +     +L R       +TLK+A S D  I  A   S  ITG  ++  VH +R +
Sbjct: 121 LEAEARAANAGFLKRVTLGLPFVTLKLAASVDGRIATASGESRWITGAHARRAVHAMRMR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DA++VG+GT LADDP+L+ R  G   H P+RI++D   + S DS++ +TA   PV +  
Sbjct: 181 HDAVMVGVGTALADDPDLSVRDLG-AAHQPVRIVVDSLLRHSCDSRLGRTARHVPVWLCH 239

Query: 250 ENDDPVLALAFRKKNINIIY-C----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
             D P  A A  +    ++  C    D  D   ++  L   G+T +  EGGA +  + + 
Sbjct: 240 GPDAPEAARAGWRAAGALLLECEAGPDGLDPAAVMRRLASEGLTRIFCEGGARLGAALVR 299

Query: 305 SRLVDSIILYRSQIVIGEGG 324
           + L D ++ + +  +IGE G
Sbjct: 300 AGLCDELVSFTAGKLIGEEG 319


>gi|15800143|ref|NP_286155.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli O157:H7 EDL933]
 gi|15829721|ref|NP_308494.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli O157:H7 str. Sakai]
 gi|168749873|ref|ZP_02774895.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756953|ref|ZP_02781960.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4401]
 gi|168761617|ref|ZP_02786624.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768362|ref|ZP_02793369.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776283|ref|ZP_02801290.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783277|ref|ZP_02808284.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4076]
 gi|168786258|ref|ZP_02811265.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC869]
 gi|168800294|ref|ZP_02825301.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC508]
 gi|195938521|ref|ZP_03083903.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli O157:H7 str. EC4024]
 gi|208806179|ref|ZP_03248516.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815640|ref|ZP_03256819.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4045]
 gi|208822832|ref|ZP_03263150.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4042]
 gi|209395713|ref|YP_002269058.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4115]
 gi|217325532|ref|ZP_03441616.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           TW14588]
 gi|254791597|ref|YP_003076434.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli O157:H7 str. TW14359]
 gi|261223893|ref|ZP_05938174.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256393|ref|ZP_05948926.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291281320|ref|YP_003498138.1| Bifunctional deaminase-reductase, C-terminal:Riboflavin
           biosynthesis protein RibD [Escherichia coli O55:H7 str.
           CB9615]
 gi|12513266|gb|AAG54763.1|AE005220_12 bifunctional pyrimidine deaminase/reductase in pathway of
           riboflavin synthesis [Escherichia coli O157:H7 str.
           EDL933]
 gi|13359924|dbj|BAB33890.1| bifunctional pyrimidine deaminase/reductase in pathway of
           riboflavin synthesis [Escherichia coli O157:H7 str.
           Sakai]
 gi|187768260|gb|EDU32104.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015886|gb|EDU54008.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999379|gb|EDU68365.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355992|gb|EDU74411.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362505|gb|EDU80924.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368039|gb|EDU86455.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373620|gb|EDU92036.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC869]
 gi|189377412|gb|EDU95828.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC508]
 gi|208725980|gb|EDZ75581.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4206]
 gi|208732288|gb|EDZ80976.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737025|gb|EDZ84709.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157113|gb|ACI34546.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4115]
 gi|209744084|gb|ACI70349.1| bifunctional pyrimidine deaminase/reductase in pathway of
           riboflavin synthesis [Escherichia coli]
 gi|209744086|gb|ACI70350.1| bifunctional pyrimidine deaminase/reductase in pathway of
           riboflavin synthesis [Escherichia coli]
 gi|209744088|gb|ACI70351.1| bifunctional pyrimidine deaminase/reductase in pathway of
           riboflavin synthesis [Escherichia coli]
 gi|209744090|gb|ACI70352.1| bifunctional pyrimidine deaminase/reductase in pathway of
           riboflavin synthesis [Escherichia coli]
 gi|209744092|gb|ACI70353.1| bifunctional pyrimidine deaminase/reductase in pathway of
           riboflavin synthesis [Escherichia coli]
 gi|217321753|gb|EEC30177.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           TW14588]
 gi|254590997|gb|ACT70358.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Escherichia coli O157:H7 str. TW14359]
 gi|290761193|gb|ADD55154.1| Bifunctional deaminase-reductase, C-terminal:Riboflavin
           biosynthesis protein RibD [Escherichia coli O55:H7 str.
           CB9615]
 gi|320192827|gb|EFW67467.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-5-phosphoribosylaminouracil
           reductase [Escherichia coli O157:H7 str. EC1212]
 gi|320638406|gb|EFX08120.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli O157:H7 str. G5101]
 gi|320643786|gb|EFX12909.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli O157:H- str. 493-89]
 gi|320649137|gb|EFX17715.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli O157:H- str. H 2687]
 gi|326341175|gb|EGD64967.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           1044]
 gi|326346050|gb|EGD69789.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-5-phosphoribosylaminouracil
           reductase [Escherichia coli O157:H7 str. 1125]
          Length = 367

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L         Q H   P+RI++D   +++ + 
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDVQTQALYPQHHLRQPVRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
            I++           E+     + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 HIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|157691490|ref|YP_001485952.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidine
           deaminase [Bacillus pumilus SAFR-032]
 gi|157680248|gb|ABV61392.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidine
           deaminase [Bacillus pumilus SAFR-032]
          Length = 361

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 117/359 (32%), Positives = 195/359 (54%), Gaps = 10/359 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++   G TS NP V  +IV+ G ++G G     G PHAE+ AL+ A E+
Sbjct: 4   DVFYMELAIANAKAMKGQTSPNPLVGAVIVQQGEIVGMGAHMKAGEPHAEIHALQMAREK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GA  YVTLEPCSHYG++ PC + II+ G++RVV+   DP+  V+G+G+  L Q GI V
Sbjct: 64  AKGAHLYVTLEPCSHYGKTGPCTEAIIKSGVKRVVIATQDPNPLVAGKGMTMLKQAGIEV 123

Query: 127 DRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  +  +    L+      ++    ++ LK A+S D  I  A   S  ITG  ++ +V  
Sbjct: 124 DEGICKQEADRLNVPFFHFIQSDFPYVILKSAISLDGKIATADLESKWITGTEARKEVQQ 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR ++DA++ G+ T++ DD  L  + + + +  P+R+ILD   ++ L +K +       +
Sbjct: 184 LRQEADAVITGVETIIQDDAGLIVKDSNMTQ--PIRVILDSTLRIPLHAKCLTDRRAETI 241

Query: 246 IIVTE-NDDPVLALAFRK-KNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           I ++   D     L   K   + I   + R D+  +L +L  R V S+LVE G +V+ SF
Sbjct: 242 ICISRMYDQKKYELLIEKGHQVYITSGEERTDIHDVLRMLKERSVMSVLVEAGGSVSASF 301

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           + + LV+  ++Y + ++IG    P+  E   ++K    +R     +DV    +GK+  +
Sbjct: 302 LEASLVNEAVIYMAPLLIGGKNAPTFFEGDGVKKLKEAIRP----ADVEYSMVGKDFKM 356


>gi|299067739|emb|CBJ38948.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
           deaminase (N-terminal);
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Ralstonia solanacearum CMR15]
          Length = 370

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 122/329 (37%), Positives = 172/329 (52%), Gaps = 10/329 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S FD   M  AL  +   +  T+ NP V C++V+D  VIG G T   G  HAE+QA+++A
Sbjct: 3   SDFDHAMMQRALALAENGLFTTTPNPRVGCVLVRDDTVIGEGFTQPAGHDHAEIQAIKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G + RGATAYVTLEPCSH+GR+PPCA  +IE GI RVV  ++DP+  VSGRGLQ L 
Sbjct: 63  QARGHDVRGATAYVTLEPCSHFGRTPPCADRLIEAGIARVVTAMEDPNPTVSGRGLQRLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           Q GI V   ++E E +     +++R       + +K+  S D    +    S  IT   +
Sbjct: 123 QAGIDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALNNGISQWITEAEA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H  RA++ AIL GIGTV  D+P LT R        P RI++D    + LD+ I+  
Sbjct: 183 RADGHRWRARACAILTGIGTVREDNPRLTVRAIPTPRQ-PRRILIDSGLDVPLDAHILTA 241

Query: 240 -ALLAPVIIVTENDDPVLALAFRKKNINIIY---CDCR-DLKKLLTILVGRGVTSLLVEG 294
                P +I     +     A  +    +I     D + DL  +L  L  R +  L VE 
Sbjct: 242 DGHHEPTLIFAARPEAGRMRALAEHGAEVILLPNADGKVDLPAMLRELGRREINELHVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           G  +  S +   LVD I++Y +  V+G G
Sbjct: 302 GYKLNGSLLREGLVDEILVYLAPKVLGSG 330


>gi|119356772|ref|YP_911416.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Chlorobium phaeobacteroides DSM 266]
 gi|119354121|gb|ABL64992.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Chlorobium phaeobacteroides DSM 266]
          Length = 366

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 123/355 (34%), Positives = 188/355 (52%), Gaps = 13/355 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG--EEA 67
           +M+     +    G+ S NP V  +IV +G ++G G     G PHAEV A+   G  E  
Sbjct: 9   YMNRCFELALQGSGMVSPNPMVGSVIVHNGEIVGEGYHERFGGPHAEVHAIASVGNAEVL 68

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           + +T YV LEPCSH+G++PPCA  I+   I RVV+   DP  +V+G+G++ L+  G+ + 
Sbjct: 69  QNSTLYVNLEPCSHFGKTPPCADLILAKRIPRVVIGCRDPHEKVAGKGIERLTAAGVQVT 128

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
           + ++  E      A++         +TLK+A + D  I  AG  S  ITG  S+ QVH L
Sbjct: 129 EGVLMPEALKLNEAFIKSCTVGLPFVTLKLAQTLDGKIATAGGASRWITGEESRTQVHRL 188

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R   DA++VG  TV ADD ELT R       +P+R++LD    L  D++I  T     V 
Sbjct: 189 RCNCDAVVVGEATVQADDSELTVR--HCAGRNPLRVLLDRRLSLFADARIFSTEAATLVF 246

Query: 247 IVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
               +   V A   RK+ + +I  D      DLK++L  L  RG+ SLLVEGG+ ++ SF
Sbjct: 247 TTRASSCSVKAEQLRKRGVEVIGVDEDATGLDLKRILQELHRRGIISLLVEGGSRLSASF 306

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGY-LEKNFMCVRRD---YFGSDVCLE 353
           + + LVD ++++ +  + G  G+ +    G  L    + +R     +FG D+ LE
Sbjct: 307 LGAALVDKLLVFIAPRLFGGDGLSAFAPLGVELPDQAVQLRFQPPVFFGRDLLLE 361


>gi|71276434|ref|ZP_00652710.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
           C-terminal [Xylella fastidiosa Dixon]
 gi|170730982|ref|YP_001776415.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase,
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Xylella fastidiosa M12]
 gi|71162750|gb|EAO12476.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
           C-terminal [Xylella fastidiosa Dixon]
 gi|167965775|gb|ACA12785.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase,
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Xylella fastidiosa M12]
          Length = 364

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 122/332 (36%), Positives = 181/332 (54%), Gaps = 17/332 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D   M  AL  +      T  NP V C+IV DG V+G G     G PHAEV AL  A
Sbjct: 5   SADDHCHMERALCLAERGAYTTRPNPMVGCVIVHDGEVVGEGWHQRAGDPHAEVFALRAA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G+ ARGATAYVTLEPC+H GR+PPCA  +I+ G+RRVV  + DP   V+G G+  L   G
Sbjct: 65  GDCARGATAYVTLEPCAHSGRTPPCAMALIDAGVRRVVAAMVDPFPLVNGGGVTLLRAAG 124

Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + V+  +ME++ +     +L+R    R  + +K+  S D    +A   S  ITG  ++  
Sbjct: 125 VTVEHGLMEAQARALNRGFLSRVERGRPWVRIKLGSSLDGRTALASGESKWITGEAARAD 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKTA 240
           V   RA++ AIL G GTVLADDP LT RL G +     P+R++LD   + SL    ++  
Sbjct: 185 VQRWRARASAILTGAGTVLADDPALTVRLGGEEGAFLPPLRVVLDSRLR-SLSCVKVRDG 243

Query: 241 LLAPVIIVTEN--DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294
             AP + +       PVL      ++++      R    DL  +L +L  RG+  + VE 
Sbjct: 244 -TAPTLYLHGFGVTSPVL------QHVDFSEVQQRDAGLDLGAVLRLLGERGINEVQVEA 296

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           GA +  + +++ LVD +++Y + +++G+   P
Sbjct: 297 GATLCGALLHAGLVDELLIYIAPLLLGDTARP 328


>gi|284051945|ref|ZP_06382155.1| riboflavin biosynthesis protein [Arthrospira platensis str. Paraca]
 gi|291567830|dbj|BAI90102.1| riboflavin biosynthesis protein RibD [Arthrospira platensis
           NIES-39]
          Length = 387

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 111/328 (33%), Positives = 176/328 (53%), Gaps = 3/328 (0%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           VS FD + M   L  ++  +G T+ NP V C+IV+D  +IG G     G PHAE+ AL  
Sbjct: 9   VSEFDRQMMRYCLNLAKEGLGKTAPNPLVGCVIVRDQKIIGEGYHPGPGQPHAEIFALRS 68

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGAT YV LEPC+HYGR+PPC++ +I+ G+ +VV  + DP+  V G+G+  L + 
Sbjct: 69  AGELARGATVYVNLEPCNHYGRTPPCSEALIKAGVAKVVAGMVDPNPLVGGQGIAKLCEA 128

Query: 123 GIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V   +E    + L+ A++ R + K++    K A++ D  I      S  +TG I++ 
Sbjct: 129 GIEVIVGVEESACLKLNEAFVHRIIYKQTFGIFKYAMTLDGKIATDIGDSAWVTGAIARQ 188

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +VH LR   DA++VG  TV  D+P LT   +G  E +P+R+++     L   +++  T+ 
Sbjct: 189 EVHRLRVACDAVIVGGNTVRRDNPHLTT--HGQGEPNPLRVVMSRSLDLPSSARLWDTSE 246

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            A ++       P      RK+ + ++        K+++    R   S+L E G  +A  
Sbjct: 247 AATIVFTKVGSRPDFQEHLRKRGVEVVEFAPLTPTKVMSYFYERQFLSVLWECGGRLASE 306

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPL 329
            I    V  I+ + +  +IG    PSP+
Sbjct: 307 AITQGCVHKILAFIAPKIIGGQAAPSPV 334


>gi|295108673|emb|CBL22626.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Ruminococcus obeum A2-162]
          Length = 375

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 122/357 (34%), Positives = 190/357 (53%), Gaps = 21/357 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A++ ++   G T+ NP V  +IVKDG +IG G     G  HAE  A+    E 
Sbjct: 3   DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGKIIGEGYHKKYGELHAERNAIASLTES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GA  YVTLEPC H+G++PPC + IIE  IR+VV+   DP+ +V+G+G+Q L + G+ +
Sbjct: 63  AEGAVIYVTLEPCCHHGKTPPCTEAIIEQKIRKVVIGSRDPNPKVAGKGVQMLREAGVTV 122

Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           V+  M  E      +F H Y+T    K  ++ +K A++ D  I      S  ITG  ++ 
Sbjct: 123 VEDFMREECDQLNPVFFH-YITT---KTPYVVMKYAMTLDGKIATKTGASKWITGESARK 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +V  +R Q   I+ GIGTVLADDP L  R+ G +  SP+RI+ D   ++   S+I+K+A 
Sbjct: 179 EVQHMRHQYMGIMAGIGTVLADDPMLNVRVEGWK--SPVRIVCDSKLRIPPGSQIVKSAE 236

Query: 242 LAPVIIV---TENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEG 294
               I+     +N    + +      +  IYC    +  DLKKL+  L  RG+ S+L+EG
Sbjct: 237 KYRTIVAYAEQKNAKEKIKI-LHTMGVETIYCPDEKNQIDLKKLMADLGNRGIDSILLEG 295

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           G  +  S + + +V  +  + +  + G     +P+E   +E     V   Y  +D+C
Sbjct: 296 GGTLNDSALRAGIVKEVQAFVAPKLFGGVAGKTPVEGIGVELPSEAVELKY--TDIC 350


>gi|332709146|ref|ZP_08429113.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Lyngbya
           majuscula 3L]
 gi|332352057|gb|EGJ31630.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Lyngbya
           majuscula 3L]
          Length = 372

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 113/334 (33%), Positives = 184/334 (55%), Gaps = 8/334 (2%)

Query: 2   PVSSFDARFMSAAL-----RFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAE 56
           PV+SF    ++ A+     + +R  +G T+ NP V C+IV++G ++G G     G PHAE
Sbjct: 5   PVTSFPETPLAQAMIQRCIQLARQALGRTTPNPLVGCVIVRNGEIVGEGFHPAAGQPHAE 64

Query: 57  VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           V AL EAGE A+GAT YV LEPC+HYGR+PPC + +I+ G+ +VVV + DPD RVSG+G+
Sbjct: 65  VFALSEAGENAQGATVYVNLEPCNHYGRTPPCTEALIKAGVAKVVVGMVDPDPRVSGKGI 124

Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
           + L   GI +V  + ES  +     ++ R + +R    LK A++ D  I      S  IT
Sbjct: 125 ERLRAAGIEVVVGVEESACRQLNEGFIHRILYQRPLGILKYAMTLDGKIAATSGHSKWIT 184

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
           G  S++ VH LR+  DA++VG  TV  D+P LT   +     +P+R+I+     L  D++
Sbjct: 185 GEKSRSWVHQLRSACDAVIVGGNTVRQDNPNLTS--HNPNAPNPLRVIMSRTLDLPRDAR 242

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
           + +T  +  ++      +  L      + + ++  +     +++  L  R ++ +L E G
Sbjct: 243 VWQTDDVPTLVFTEVGTEGDLYQHLVNQGVEVVVLNPLTPSRVMAYLYDRQLSRVLWECG 302

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
             +A + I    V  I+ + +  +IG  G PSP+
Sbjct: 303 GILAANAIADGAVQKILAFIAPKIIGGHGGPSPV 336


>gi|91792502|ref|YP_562153.1| riboflavin biosynthesis protein RibD [Shewanella denitrificans
           OS217]
 gi|91714504|gb|ABE54430.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Shewanella denitrificans OS217]
          Length = 378

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 121/343 (35%), Positives = 181/343 (52%), Gaps = 30/343 (8%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL--- 60
           S FD   MS A++ +      T  NP V C+IVKDGI +  G     G  HAEV AL   
Sbjct: 5   SKFDIEMMSRAIQLAERGRYTTRPNPCVGCVIVKDGIKLAEGYHQKAGFGHAEVNALAAL 64

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           + A   A GATAYVTLEPCSH+GR+PPCAQ ++E G+ +VVV + D + +V+G+G+  L 
Sbjct: 65  KSANLSAIGATAYVTLEPCSHFGRTPPCAQTLVESGVAKVVVAITDANPQVAGKGIAMLR 124

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI V+  +++++       ++ R       +T+K+A S D    ++   S  ITG  S
Sbjct: 125 EAGIAVEVGLLQAQALELNLGFMKRMRTGLPWVTVKLAASLDGKTALSNGVSKWITGDAS 184

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFK 229
           +N V  LRA+S A++ GI TVLADDP L  R   L          + H P+RI+LD   +
Sbjct: 185 RNDVQKLRARSCALITGIETVLADDPSLNVRYQSLGSLKDELDVTELHQPVRIVLDSKAR 244

Query: 230 LSLDSKIIKTALLAPVIIVTENDDP--------VLALAFRKKNINIIYCDCRDLKKLLTI 281
           L+ D ++   ++ +P+I+V+    P        V  L F   N      D R     L  
Sbjct: 245 LTADKRLF--SITSPIILVSTQAYPETVIFPAHVQCLQFAPDN------DGRVPLISLFH 296

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            +G+    +L+E GA +A   +   L D + LY++  ++G  G
Sbjct: 297 HLGKSYNQVLIEAGATLAGKVLELGLGDELYLYQAMKILGSHG 339


>gi|26522745|dbj|BAC44849.1| pyrimidine deaminase/pyrimidine reductase [Photobacterium
           phosphoreum]
          Length = 388

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 181/335 (54%), Gaps = 20/335 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++  D + MS A+  ++     T+ NP+V C+IV DG ++G G     G PHAEV AL +
Sbjct: 1   MTHTDQQMMSRAIALAKHGCYTTAPNPNVGCVIVNDGDIVGEGYHYQAGQPHAEVFALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A + A+GAT YVTLEPCSHYGR+PPCA+ +I   + RVV  + DP+  V+GRG+  L   
Sbjct: 61  AQQRAQGATVYVTLEPCSHYGRTPPCAEALINAKVARVVCAMVDPNPAVAGRGIALLRAA 120

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI VD  ++ S+ +     ++ +   +  ++ LK+A S D    +A   S  ITG  ++ 
Sbjct: 121 GIEVDVGVLASQAQALNPGFIKQMSHQMPYVELKLAASLDGRTALANGVSKWITGPKARA 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V   RAQ+ AIL    TV+ADDP L  R + L+E             P+R+I+D   +L
Sbjct: 181 DVQHFRAQAGAILSTSATVIADDPSLNVRWSELEESVQQAYPQSALRQPIRVIIDSQNRL 240

Query: 231 SLDSKIIK---TALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286
           + + ++       +LA   I TE   D V       +  +       DL  L++ L   G
Sbjct: 241 TPEYQLFHLPGETILARTEIGTEAWPDSVQQWQIPTQTDS----HQLDLVVLMSRLANYG 296

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           +  + VE GA +A + +  +LVDS+ILY++  ++G
Sbjct: 297 INHIWVEAGARLAGALLQQQLVDSLILYQAPKLMG 331


>gi|187925073|ref|YP_001896715.1| riboflavin biosynthesis protein RibD [Burkholderia phytofirmans
           PsJN]
 gi|187716267|gb|ACD17491.1| riboflavin biosynthesis protein RibD [Burkholderia phytofirmans
           PsJN]
          Length = 383

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 129/365 (35%), Positives = 186/365 (50%), Gaps = 25/365 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  ++  +  T  NP V C++VK+G VIG G T   G  HAE++AL++A
Sbjct: 3   SQTDFVHMERALALAKRGMYTTDPNPRVGCVLVKNGEVIGEGFTQPAGQDHAEIRALKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G + RGATAYVTLEPCSH+GR+PPCA  +IE  + RVV  ++DP+ +VSGRGL  L 
Sbjct: 63  RSRGHDLRGATAYVTLEPCSHFGRTPPCANALIEAQVARVVAAMEDPNPQVSGRGLAMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++  E       +++R    R  + +K+A S D   G+    S  ITG  +
Sbjct: 123 DAGIEVRCGLLAHEAHELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGDSQWITGEAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H  RA++ AIL GIGTV  D+P +T R        P R+++D    +  D++I+  
Sbjct: 183 RADGHAWRARASAILTGIGTVREDNPRMTVRAVDTPRQ-PQRVLIDSQLDVPPDAQILAG 241

Query: 240 ALLAPVIIVTENDD---PVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLV 292
              A  +I   N D      A A R +   I+         DL  +L +L  R V  L V
Sbjct: 242 ---ASTLIFCGNLDGRHTDRAAALRDRGAEIVQLANPAGKVDLPAVLKVLGQRNVNELHV 298

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI-------PSPLEEGYLEKNFMCVRRDY 345
           E G  +  S +    VD +++Y +  ++G   +       P  L EG ++ NF  V  D 
Sbjct: 299 EAGYKLNGSLLREGCVDELLVYLAPSLLGMDSMSMFNLSAPETL-EGRVKLNFHAV--DR 355

Query: 346 FGSDV 350
            G DV
Sbjct: 356 IGEDV 360


>gi|328948002|ref|YP_004365339.1| riboflavin biosynthesis protein RibD [Treponema succinifaciens DSM
           2489]
 gi|328448326|gb|AEB14042.1| riboflavin biosynthesis protein RibD [Treponema succinifaciens DSM
           2489]
          Length = 390

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 127/374 (33%), Positives = 189/374 (50%), Gaps = 21/374 (5%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--- 66
           FM  A+  ++   G    NP V  +I KDG +I  G     G  HAE  AL+ A E+   
Sbjct: 18  FMQRAIELAKRGGGKVHPNPLVGAVIEKDGKIIAEGFHHEYGNLHAERDALKNAAEKNAC 77

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            RGA  YVTLEPC H G+ PPC Q II+ GI+ VV+   DP+  V+G+G+  L   GI +
Sbjct: 78  VRGANLYVTLEPCCHTGKQPPCTQAIIDAGIKNVVIGSRDPNSLVNGKGVAQLENAGIKI 137

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
            R  M++E       +      KR  + +K A S D    ++   S  IT   S+  VH 
Sbjct: 138 FRDFMKAECDSLNEIFFYYITAKRPFVIVKYAQSADGKTSLSSGESKWITNESSREYVHY 197

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR  + A++ GI TVL DDP LTCR+ G + + P+RI+LD   K+ L+S ++KTA   P+
Sbjct: 198 LRGTTAAVMCGIQTVLKDDPLLTCRIKGEELNQPVRIVLDTELKIPLESNLVKTANEVPL 257

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           II T +D    + A  +K   +I  + +    D+ ++L  L    + S+LVE G ++  S
Sbjct: 258 IIFTCSDSAKKS-ALEEKGAKVIQIEKKDSHIDILQVLKKLGEFSIDSVLVESGGSLNSS 316

Query: 302 FI-----NSRLVDSIILYRSQIVIG--EGGIPSPLEEGYLEKNFMCVRR-----DYFGSD 349
                     LV+ ++ + +  ++G   G + SP++         CV         F  D
Sbjct: 317 LFFYGKEKKCLVNKVLCFVAPKILGGINGTVHSPVQGIECSSLLSCVNLALKNVKTFSGD 376

Query: 350 VCLEYIGKNLCLQE 363
           + LEY  K  CL+E
Sbjct: 377 LLLEYDFKEPCLEE 390


>gi|323484047|ref|ZP_08089417.1| hypothetical protein HMPREF9474_01166 [Clostridium symbiosum
           WAL-14163]
 gi|323402489|gb|EGA94817.1| hypothetical protein HMPREF9474_01166 [Clostridium symbiosum
           WAL-14163]
          Length = 370

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 121/365 (33%), Positives = 194/365 (53%), Gaps = 27/365 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M  AL  +R   GL + NP V  +IVK+G VIGRG     G PHAE  AL    E 
Sbjct: 4   DEKYMRMALSLARKGCGLAAPNPMVGAVIVKEGRVIGRGYHQKYGGPHAEQNALSSCTEP 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            +GA  YVTLEPC H G+ PPC + I++  I RVVV   DP+  V G+G++ L + G+ +
Sbjct: 64  PQGAVMYVTLEPCCHSGKQPPCVKAILQAEISRVVVGSADPNPLVGGKGIRILREHGVSV 123

Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
            + ++  E     ++F H   T    +   + +K A++ D  I      S  ITG  +++
Sbjct: 124 TEDILREECAKLNEVFFHYIRT----EHPFVVMKYAMTMDGKIAAVTGESKWITGEAARH 179

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTA 240
            V  LR +  AI+ G+GTV++DDP LTCR  G++   +P+RII D   +    ++++ TA
Sbjct: 180 HVQKLRHRYTAIMAGVGTVISDDPLLTCR--GVRGGKNPVRIICDTRLRTPPAARVVATA 237

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
             AP +I T  DDP   + ++K   +++    +    DL++L+  L  +G+ S+L+EGG 
Sbjct: 238 GQAPTVIATCCDDPERHMVYQKAGCSVLTVREKNGHVDLRELMRKLGKQGIDSILLEGGG 297

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE--------EGYLEKNFMCVRRDYFGS 348
            +  + + S +V     Y +  ++G     +P+E        +G + KN   +R    G 
Sbjct: 298 TLNWAALESGIVQKTEAYIAPKLLGGETSKTPVEGAGFLSPGDGIVLKNSRIIR---LGE 354

Query: 349 DVCLE 353
           D  +E
Sbjct: 355 DFLIE 359


>gi|119472108|ref|ZP_01614339.1| Riboflavin biosynthesis protein [Alteromonadales bacterium TW-7]
 gi|119445128|gb|EAW26421.1| Riboflavin biosynthesis protein [Alteromonadales bacterium TW-7]
          Length = 383

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 114/328 (34%), Positives = 174/328 (53%), Gaps = 12/328 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           +  D  +M+ A+  ++     T+ NP+V C++VKD  +IG G     G  HAEV AL  A
Sbjct: 8   TEHDKLYMARAIELAKKGRFTTTPNPNVGCVLVKDNQIIGEGFHQLAGQGHAEVNALAVA 67

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE+A+GATAYVTLEPCSHYGR+PPCA+ +   GI++V+  + D + +V+G+GL+ LS  G
Sbjct: 68  GEKAQGATAYVTLEPCSHYGRTPPCAEGLKAAGIKKVIAAMVDTNPQVAGKGLKILSDAG 127

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +   ++E E +     +  R  +   ++T K+A S D    +    S  ITG  ++  
Sbjct: 128 IEVAHGLLEQEARALNFGFFKRMEQGLPYVTCKLAASIDGKTALKNGKSKWITGPDARKD 187

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN--------GLQEHSPMRIILDPHFKLSLDS 234
           V L RAQS AIL G  TVL D+ +L  R +         L    P+R+I+D   +L+ D 
Sbjct: 188 VQLYRAQSCAILTGADTVLVDNAKLNVRPSELPYSLPTNLPLRQPVRVIIDSQNRLTPDL 247

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVE 293
            + K A   PVII T   D  +      K+I +     + DL  +L  L      ++ +E
Sbjct: 248 ALFKIA--HPVIIFTTKVDNSMQWPHFVKHIAVREQQGKVDLTDVLQTLAKHQFNNIWLE 305

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG 321
            GA +A       L+D  + Y +  ++G
Sbjct: 306 AGATLAGKMTELDLIDEYVFYIAPKLMG 333


>gi|333010856|gb|EGK30282.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-272]
 gi|333021355|gb|EGK40608.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-227]
          Length = 367

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 QRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++    +      E+     + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGESWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A   + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGVLLQAGLVDELIVYIAPKLLGSDARGLCSLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|126660826|ref|ZP_01731920.1| riboflavin biosynthesis protein [Cyanothece sp. CCY0110]
 gi|126617877|gb|EAZ88652.1| riboflavin biosynthesis protein [Cyanothece sp. CCY0110]
          Length = 364

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 117/334 (35%), Positives = 182/334 (54%), Gaps = 5/334 (1%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D + M   L  +R  +G TS NP V  +IVKDG +IG G     G PHAEV AL EAG
Sbjct: 6   NVDQQMMQRCLTLARQGLGYTSPNPLVGAVIVKDGKIIGEGFHPKAGEPHAEVFALREAG 65

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E+A G T YV LEPC+HYGR+PPC + +I   + RVVV + DP+  VSG+G+  L + GI
Sbjct: 66  EKAVGGTVYVNLEPCNHYGRTPPCTEALISAKVARVVVGMVDPNPLVSGKGIARLQEAGI 125

Query: 125 IVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V   +E    + L+ A+  R +  +    LK A++ D  I  +   S  +TG  S+  V
Sbjct: 126 EVTVGVEEAACLRLNEAFCHRILNNQPFGILKYAMTLDGKISSSTGHSAWVTGTKSRQLV 185

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H +RA  DA++VG  TV  D+P LT  ++ +   +P+R+++  +  L  ++ +     +A
Sbjct: 186 HQIRAGCDAVIVGGNTVRRDNPHLT--IHQVTGVNPLRVVMSRNLHLPEEANLWNVD-IA 242

Query: 244 PVIIVTE-NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           P I+ TE  ++P L    R K + +I        +++ IL  R + S+L E G  +    
Sbjct: 243 PTIVFTEWGNNPSLQTKLRDKGVEVIELSPLTPSQVMDILYERQLCSVLWECGGVLGAEA 302

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
           I  R++  I+ + +  +IG     SP+ +  L+K
Sbjct: 303 ITQRVIQKIMAFIAPKIIGGFSAASPVGDLGLDK 336


>gi|323491728|ref|ZP_08096906.1| riboflavin-specific deaminase [Vibrio brasiliensis LMG 20546]
 gi|323314090|gb|EGA67176.1| riboflavin-specific deaminase [Vibrio brasiliensis LMG 20546]
          Length = 368

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 119/331 (35%), Positives = 176/331 (53%), Gaps = 24/331 (7%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           +S D + MS A+  ++  +  T+ NP+V C+I +DG ++G G     G PHAEV AL  A
Sbjct: 5   TSQDFKMMSRAIELAKGGIYTTAPNPNVGCVITRDGEIVGEGFHYRAGEPHAEVHALRMA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE++ GATAYVTLEPCSHYGR+PPCA+ +I+  + +V+  + DP+ +V+GRG+Q L   G
Sbjct: 65  GEKSVGATAYVTLEPCSHYGRTPPCAEGLIKAKVAKVICAMQDPNPQVAGRGIQMLRDAG 124

Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V+  +  +  I L+ A++ R       + LK+A S D    +A   S  IT   ++  
Sbjct: 125 IEVEVGLLEQDAINLNPAFIKRMKTAMPFVQLKMAASLDGQTALANGQSQWITSSKARQD 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----QEH-------SPMRIILDPHFKLS 231
           V   RAQS AIL    TV+ D+  L  R + L    Q H        P+R+ILD    L+
Sbjct: 185 VQKYRAQSGAILSTSKTVIDDNASLNVRWDDLPQSVQSHYPEQQLRQPVRVILDRQGLLT 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSL 290
            + K+  T      +IV E  D  L L    +          DL+     L  +  +  L
Sbjct: 245 PELKLFNTE--GGRLIVAEQGDVELQLNTEHQ---------VDLRATFADLANKHNINHL 293

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            VE GA +A S I + LVD ++LY +  ++G
Sbjct: 294 WVEAGATLASSLIKADLVDELVLYLAPKIMG 324


>gi|255994555|ref|ZP_05427690.1| riboflavin biosynthesis protein RibD [Eubacterium saphenum ATCC
           49989]
 gi|255993268|gb|EEU03357.1| riboflavin biosynthesis protein RibD [Eubacterium saphenum ATCC
           49989]
          Length = 368

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 120/326 (36%), Positives = 180/326 (55%), Gaps = 21/326 (6%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE--- 65
           ++MS AL  +   +G TS NP V  +IVK+G +IG+G     G  HAEV+A+++A     
Sbjct: 11  KYMSMALELAEKGLGTTSPNPMVGAVIVKNGEIIGKGFHKKAGSAHAEVEAVQDAHSKDY 70

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS----- 120
           +  GA  YVTLEPCSH GR+P C+  +I+  I RV + + DP+  V+G G++ L      
Sbjct: 71  DIEGADMYVTLEPCSHKGRTPACSDLLIKEKIGRVFIGMRDPNPLVNGGGIEKLEGALIK 130

Query: 121 -QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
            + GI+ +R  +   K+FL  Y+T   EK  ++  K  ++ D  I      S  IT   S
Sbjct: 131 CEVGILEERCRQL-NKVFLK-YVT---EKMPYVIFKSGITLDGKIATGTGKSKWITSEES 185

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  VHLLR++  AI+VGIGTVLADDP LT R  G   + P++II+D   +L L++K++  
Sbjct: 186 RKDVHLLRSRCSAIMVGIGTVLADDPRLTARFEGA--YDPVKIIVDSKLRLPLEAKVVGE 243

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAA 297
                ++   EN           K + II    +  DL+K +  L    + S+L+EGGA 
Sbjct: 244 DC---IVGCCENVSREKIEELTNKGVKIIKAGKNKVDLRKFMAELAKLEIDSVLLEGGAT 300

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323
           +A S    +LVD I LY + ++ G G
Sbjct: 301 LAASMFKEQLVDEIRLYMAPMIFGSG 326


>gi|313675594|ref|YP_004053590.1| riboflavin biosynthesis protein ribd [Marivirga tractuosa DSM 4126]
 gi|312942292|gb|ADR21482.1| riboflavin biosynthesis protein RibD [Marivirga tractuosa DSM 4126]
          Length = 359

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 117/328 (35%), Positives = 173/328 (52%), Gaps = 14/328 (4%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           +PV S  D  FM  AL+ + +     S NP V C+IV DG VIG G     G PHAEV A
Sbjct: 7   LPVMSKQDELFMQRALQLAGYGKATASPNPMVGCVIVLDGKVIGEGWHKKAGEPHAEVMA 66

Query: 60  LE--EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           +   E  E  + +TAYVTLEPC+HYG++PPCA+ ++E  +++VV+   DP+  V+G+G+Q
Sbjct: 67  IRSVENPELLKSSTAYVTLEPCAHYGKTPPCAELLVEKQLKKVVIGAVDPNPLVAGKGIQ 126

Query: 118 WLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
            L + GI V+  ++E E      A+ T   +KR +I LK A + D  I      S  I+ 
Sbjct: 127 ILKKAGIEVESAVLEQECLEVNKAFFTYMQKKRPYIILKWAQTSDGFIARENFDSKWISN 186

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
            +S+  VH  R ++DAIL+G  T   DDP+LT R       +P+R+++D    L  D KI
Sbjct: 187 PLSRQIVHKWRTETDAILIGKNTAKYDDPQLTAR--DWSGKNPIRLVIDHDLTLGNDLKI 244

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTSLLVEGG 295
                    I     D  +      +K I  I     D L+ +L  L    + S+L+EGG
Sbjct: 245 FDGE--QKTIFFHSQDQKI-----ERKGIAAIKLSKEDFLRDMLNYLHQEKIQSVLIEGG 297

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG 323
           A    SFI++ L D   ++ + +   +G
Sbjct: 298 AQTVQSFIDAGLWDEARIFTASVSFEKG 325


>gi|110640675|ref|YP_668403.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli 536]
 gi|306813120|ref|ZP_07447313.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli NC101]
 gi|110342267|gb|ABG68504.1| riboflavin biosynthesis protein RibD [Escherichia coli 536]
 gi|305853883|gb|EFM54322.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli NC101]
 gi|307552319|gb|ADN45094.1| riboflavin biosynthesis protein RibD [Escherichia coli ABU 83972]
          Length = 361

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 131/367 (35%), Positives = 190/367 (51%), Gaps = 28/367 (7%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+A+GA
Sbjct: 1   MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
           TAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V   +
Sbjct: 61  TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  LRAQ
Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDSKIIK 238
           S AIL    TVLADDP LT R + L E +           P+RI++D   +++ + +I++
Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPEHRIVQ 240

Query: 239 TALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
                      E+     + V  L   +   ++      DL  L+  L  + + S+ VE 
Sbjct: 241 QPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSIWVEA 294

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349
           G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      + G D
Sbjct: 295 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPG-LEKLADAPQFKFKEIRHVGPD 353

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 354 VCLHLVG 360


>gi|167768613|ref|ZP_02440666.1| hypothetical protein CLOSS21_03172 [Clostridium sp. SS2/1]
 gi|167710137|gb|EDS20716.1| hypothetical protein CLOSS21_03172 [Clostridium sp. SS2/1]
          Length = 361

 Score =  186 bits (471), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 126/357 (35%), Positives = 187/357 (52%), Gaps = 20/357 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A+  ++   G T+ NP V  +IVKD  VIG G     G  HAE  AL+   E+ +GA
Sbjct: 1   MRRAIELAKKGCGYTNPNPLVGAVIVKDQKVIGEGYHEKIGGLHAERNALKNCIEDPKGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
             YVTLEPC HYG++PPC + +IE GI++V V   DP+ +V+G G++ L+  GI  +  +
Sbjct: 61  EIYVTLEPCCHYGKTPPCTEALIEAGIKKVYVGNLDPNPKVAGGGIKILNDHGIETETGI 120

Query: 130 MESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +E E      IF H Y+   +    +  LK A++ D  I  A   S  ITG  ++  VH 
Sbjct: 121 LEEECRQLNDIFFH-YIQNDI---PYTALKYAMTLDGKIATATGESKWITGEEARRHVHT 176

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR Q  AI+ GIGTVLADDP L  R+     + P+R+I D + ++S  S I+KTA   P 
Sbjct: 177 LRHQYAAIMAGIGTVLADDPMLNARIE--HGNDPIRVICDSNLRISEGSNIVKTAREIPT 234

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHS 301
           II T + D        +K   I+    +D    +K++L  L    + S+LVEGG  +  S
Sbjct: 235 IIATISKDQEKIAKLEQKGCKILKTSEQDGKVNVKEVLKQLRNMEIDSVLVEGGGILNES 294

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
            I +  V  +  Y +  + G     +P+E   +E+      F  ++    G+D+ LE
Sbjct: 295 LIKNDCVHKVYAYIAPKLFGGEKAKTPVEGKGIERIQEALVFDELKATPLGNDILLE 351


>gi|187932958|ref|YP_001885493.1| riboflavin biosynthesis protein RibD [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721111|gb|ACD22332.1| riboflavin biosynthesis protein RibD [Clostridium botulinum B str.
           Eklund 17B]
          Length = 378

 Score =  186 bits (471), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 111/325 (34%), Positives = 177/325 (54%), Gaps = 9/325 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           VS  +  +M  AL  ++  +G  + NP V  +IVKD  +IG G   Y G  HAEV A+  
Sbjct: 13  VSLVNEEYMDLALELAKKGIGKVNPNPLVGAVIVKDNEIIGTGYHEYYGGAHAEVDAINN 72

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
             +   G+T Y+TLEPC+HYG++PPC   IIE  I++VV+ + DP+  VSG+ ++ L + 
Sbjct: 73  TTKSLEGSTIYITLEPCAHYGKTPPCVNLIIEKKIKKVVIGMLDPNPMVSGKSVKKLKEN 132

Query: 123 GIIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
            I V   +E E  K    +++         + LK A+S D  I  +   S  IT   ++ 
Sbjct: 133 DIEVIVGVEEEKCKKLNESFIKYITSNLPFVILKSAISLDGKIATSIGESKWITSKEARI 192

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             HLLR +  AI+VG+ T++ D+PELTCR+ NG    +P+RI++D   ++ L SK+IK  
Sbjct: 193 DGHLLRNKLSAIMVGVNTIIKDNPELTCRIENG---RNPIRIVVDSTLRIPLSSKVIKNY 249

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
               +I  T+  D +       +N+N+I    +    DLK+L+  L    + S+L+EGG 
Sbjct: 250 DGLTIIATTKYADKLKKEKLVGRNVNVIEIIDKNKKVDLKELMRYLGTLKIDSILIEGGG 309

Query: 297 AVAHSFINSRLVDSIILYRSQIVIG 321
            +  S +   +VD +  Y +  ++G
Sbjct: 310 TLNFSALEENIVDKVRFYIAPKILG 334


>gi|207728168|ref|YP_002256562.1| riboflavin biosynthesis bifunctional protein ribd :
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Ralstonia solanacearum MolK2]
 gi|206591413|emb|CAQ57025.1| riboflavin biosynthesis bifunctional protein ribd :
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Ralstonia solanacearum MolK2]
          Length = 370

 Score =  186 bits (471), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 120/329 (36%), Positives = 173/329 (52%), Gaps = 10/329 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S FD   M  AL  +   +  T+ NP V C++V+D  +IG G T   G  HAE+QA+++A
Sbjct: 3   SDFDHAMMQRALALAENGLFTTTPNPRVGCVLVRDDTIIGEGFTQPPGQDHAEIQAIKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G + RGATAYVTLEPCSH+GR+PPCA  ++E GI RVV  ++DP+  VSGRGLQ L 
Sbjct: 63  QARGHDVRGATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPAVSGRGLQKLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI V   ++E E +     +++R       + +K+  S D    +    S  IT   +
Sbjct: 123 EAGIDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITEAEA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +N  H  RA++ AIL GIGTV  D+P LT R        P RI++D    + LD+ I+  
Sbjct: 183 RNDGHRWRARACAILTGIGTVREDNPRLTVRAIPTPRQ-PRRILIDSGLDVPLDAHILTA 241

Query: 240 -ALLAPVIIVTENDDPVLALAFRKKNINIIY---CDCR-DLKKLLTILVGRGVTSLLVEG 294
                P +I     +     A  +    +I     D + DL  +L  L  R +  L VE 
Sbjct: 242 DDHREPTLIFAARPEAGRMRALAEHGAEVILLPNADGKVDLPAMLRELGRREINELHVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           G  +  S +   LVD I++Y +  V+G G
Sbjct: 302 GYKLNGSLLREGLVDEILVYLAPKVLGSG 330


>gi|94500359|ref|ZP_01306891.1| riboflavin-specific deaminase/reductase [Oceanobacter sp. RED65]
 gi|94427394|gb|EAT12372.1| riboflavin-specific deaminase/reductase [Oceanobacter sp. RED65]
          Length = 370

 Score =  186 bits (471), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 123/333 (36%), Positives = 180/333 (54%), Gaps = 24/333 (7%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM+ A++ ++  +  T  NP V C++VK+G +IG G     G  HAEV AL +AG  A+G
Sbjct: 7   FMARAIQLAKQGLYSTDPNPRVGCVLVKEGNIIGEGYHVRAGEGHAEVNALAQAGSAAQG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           ATAYVTLEPCSH+GR+PPC+  +I+ GIR +V  + DP+  VSGRG + +   GI I+  
Sbjct: 67  ATAYVTLEPCSHFGRTPPCSDTLIKAGIRTLVCAMQDPNPEVSGRGFEKMRAAGIEIISG 126

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++ESE K     ++ R      ++ +KIA S D    MA   S  ITG  ++  V  LRA
Sbjct: 127 VLESEAKKLNPGFIKRMSGGLPYVRVKIASSLDGRTAMASGESQWITGGNARADVQRLRA 186

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQ-----------EHSPMRIILDPHFKLSLDSKII 237
           +S AI+ GI ++LADD  LT R + L            E  P+R+ILD H ++  D K++
Sbjct: 187 RSSAIISGIDSILADDSSLTVREDELALADAELAKRAIEKQPLRVILDSHGRIRPDHKVV 246

Query: 238 KTALLAPVIIVTENDDP----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
             +    V +      P     LAL   +  +N        L++LL  L  R    +LVE
Sbjct: 247 NQSGQTLVCVRHGVQLPNFVESLALNHGESGLN--------LRELLKALADRQCNEVLVE 298

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            G+ +A  FI   LVD ++ Y +  ++G    P
Sbjct: 299 TGSTLAGQFIQQGLVDEVVHYMAPCLMGSEARP 331


>gi|114319537|ref|YP_741220.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225931|gb|ABI55730.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 369

 Score =  186 bits (471), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 123/336 (36%), Positives = 178/336 (52%), Gaps = 22/336 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D  FM  ALR +R        NP+V C++V+DG+++G G     G PHAE  AL  A
Sbjct: 5   SPADNLFMGRALRLARRPQQPPHPNPAVGCVLVRDGLIVGEGWHERAGEPHAEAMALHRA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE+A GATAYVTLEPCSH+GR+PPC++ ++  G+ RVV  + DP+ +V+GRGL+ L   G
Sbjct: 65  GEQASGATAYVTLEPCSHHGRTPPCSEALLAAGVVRVVAAMTDPNPQVAGRGLRRLRAAG 124

Query: 124 IIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + V   + +E    L+   T+++   R  + LK A S D    MA   S  IT   ++  
Sbjct: 125 LEVATGLMAEQAAALNPGFTQRMRTGRPWLRLKSAASLDGRTAMASGESRWITSPQARAD 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIK--- 238
           VH  RA+SDA+L GIGTVLADDP L  R  G++    P R +LD   +   D+ +++   
Sbjct: 185 VHRWRARSDAMLTGIGTVLADDPRLDVRDAGIEAPRQPRRCVLDRDLRTPADAVLLRGEG 244

Query: 239 -TALLAPVIIVTENDDPVLALAFRKKNINIIYC------DCR-DLKKLLTILVGRGVTSL 290
            T    P +   +          R+      +C      D R DL   L  L G+G   +
Sbjct: 245 ATLFHGPDVAAGQ---------IRRLTDAGAHCVALPLADGRLDLGAALDWLGGQGCNEV 295

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           LVE G  +  +   + LVD  +LY +  ++G+   P
Sbjct: 296 LVEAGPTLGGALSRAGLVDEWLLYLAPHLMGDAARP 331


>gi|310766817|gb|ADP11767.1| Riboflavin biosynthesis protein RibD [Erwinia sp. Ejp617]
          Length = 367

 Score =  185 bits (470), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 121/330 (36%), Positives = 179/330 (54%), Gaps = 14/330 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL  +R     T+ NP+V C++V+DG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEIYMARALELARRGRFTTTPNPNVGCVLVRDGQIVGEGYHMRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           + GATAYVTLEPCSH+GR+PPC + +I  GI+RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  SLGATAYVTLEPCSHHGRTPPCCEALIAAGIKRVVTAMQDPNPQVAGRGLYRLQQAGIEV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M  E +     +L R       + LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMQEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPEARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLAD+P LT R + L   S           P+R+I+D   +++ + 
Sbjct: 183 LRAQSSAILSTSATVLADNPALTVRHDELDSASLADYPVDLLRQPVRVIVDAQNRVTPEY 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           ++I  A      +   + D         + I  +Y +  DL  LL +L  + + S+ VE 
Sbjct: 243 RLI--AQPGETWLARSSGDRQQWPENVSQLIVPLYQNRLDLVSLLMLLGKKQINSVWVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           GA  A + + + +VD +I+Y +  ++G+ G
Sbjct: 301 GAQFAGALLQAGVVDELIVYLAPKLLGDAG 330


>gi|154491828|ref|ZP_02031454.1| hypothetical protein PARMER_01449 [Parabacteroides merdae ATCC
           43184]
 gi|154088069|gb|EDN87114.1| hypothetical protein PARMER_01449 [Parabacteroides merdae ATCC
           43184]
          Length = 395

 Score =  185 bits (470), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 121/337 (35%), Positives = 184/337 (54%), Gaps = 20/337 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + ++M+  +  +R   G T+ NP V  +IV  G +IG G     G  HAEV A+    +E
Sbjct: 52  EEKYMARCIELARGGEGNTAPNPMVGAVIVHKGKIIGEGFHRKCGEAHAEVNAVASVRDE 111

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           A  R +T YV+LEPCSHYG++PPCA+ II  GI RVVV   DP   VSGRG++ L + GI
Sbjct: 112 ALLRDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGTLDPFPEVSGRGVRMLREAGI 171

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM----AGCGSVPITGFIS 179
            +V  ++E E +    A++T Q+ KR ++ LK A S D  I +    A   SV ++   +
Sbjct: 172 EVVTGVLEEEARALNPAFMTFQIRKRPYVYLKWAQSADGFIDIRREDASVPSVLLSSAET 231

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
             +VH LR++  AI+VG  T L D+P LT R       SP+R++LD   KL + S ++  
Sbjct: 232 LRRVHRLRSEVAAIMVGTRTALLDNPSLTVR--HWAGRSPVRVVLDRTLKLPVGSHLLDG 289

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAA 297
           A+   V    E +         + N+  +  D     L ++L  L G+ + SL+VEGGA 
Sbjct: 290 AVPTLVFTAVEVES--------RPNVEYVQIDFGQEVLSQVLQYLYGQNLNSLMVEGGAE 341

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
           +  SF+++ L D   +  + +V+G  G+ +P   G L
Sbjct: 342 LLESFLDAGLWDEAWVETAPVVLG-AGVKAPAVPGVL 377


>gi|225620931|ref|YP_002722189.1| riboflavin biosynthesis protein RibD [Brachyspira hyodysenteriae
           WA1]
 gi|225215751|gb|ACN84485.1| riboflavin biosynthesis protein RibD [Brachyspira hyodysenteriae
           WA1]
          Length = 360

 Score =  185 bits (470), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 117/320 (36%), Positives = 169/320 (52%), Gaps = 11/320 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL---EEAGEEA 67
           M  A+  ++   G TS NP V  +IVKDG VIG G     G  HAE+ A    +E GE  
Sbjct: 1   MKMAIEEAKKGEGFTSPNPLVGAVIVKDGKVIGIGYHKKCGENHAEINAFLDAKEKGENV 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
             A  YVTLEPCSHYG++PPCA  II+  ++RV++   D + +V+G G++ L   GI ++
Sbjct: 61  EDADIYVTLEPCSHYGKTPPCADAIIKNKLKRVIIGCVDSNPKVAGNGIKKLKDAGIEVI 120

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++E E +     +      KR  I +K A++ D  I      S  IT   ++   H  
Sbjct: 121 VNVLEEECRKLNEVFFYYIANKRPFIVMKYAMTIDGKIATVSGKSKWITSEKTREHSHRF 180

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R +  AI+VGI TV+ D+P L CRL   +  +P+RIILD   K+ LDS I KTA      
Sbjct: 181 RNKYSAIMVGINTVIEDNPTLNCRLPNTR--NPIRIILDSSLKMGLDSNICKTAKEIKTF 238

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTIL-VGRGVTSLLVEGGAAVAHS 301
           I T +DD           I II  +  +    LK L+ IL   + + S+ VEGGAA+  S
Sbjct: 239 IATISDDDKKIKELENVGIEIIKTENDNGKVSLKDLMRILGEEKDIDSVYVEGGAALHAS 298

Query: 302 FINSRLVDSIILYRSQIVIG 321
            +  +LV+  ++Y +  + G
Sbjct: 299 LLKEKLVNKALIYIAPKIFG 318


>gi|161830583|ref|YP_001596568.1| riboflavin biosynthesis protein RibD [Coxiella burnetii RSA 331]
 gi|161762450|gb|ABX78092.1| riboflavin biosynthesis protein RibD [Coxiella burnetii RSA 331]
          Length = 354

 Score =  185 bits (470), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 113/332 (34%), Positives = 175/332 (52%), Gaps = 10/332 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  SS D  ++  AL  +    G  + NPSV  ++VKD  +I  G     G PHAEV+A+
Sbjct: 1   MNDSSLD--YLKKALSLAEIRRGFCAPNPSVGAVVVKDDKIISTGFHKRSGLPHAEVEAI 58

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           +  G++ARGA  YVTLEPC H+G++PPC   II+ GI+ V   + DP++ V G+G++ L 
Sbjct: 59  KSLGDKARGAALYVTLEPCCHFGKTPPCTDLIIQSGIKDVYYGLHDPNLAVCGKGIEQLQ 118

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           + G+    +   E   F  +Y      KR  +T K+A+S D  I       V +TG   +
Sbjct: 119 RAGVNCFLIELPEINAFYESYRYWIKHKRPWVTAKLALSLDGKIVGNEGKPVRLTGEGLR 178

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              H  R +SDA+L  I T+L DDP+L  RL G +   P+  ILD H +L L++ I +TA
Sbjct: 179 QYTHERRKKSDALLTTINTILTDDPKLNVRLQGEEIKKPI-YILDTHLRLPLNALIHQTA 237

Query: 241 LLAPVIIVTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295
               +I+   N+ D        +KNI  I    R    DL ++L ++   G+  L +E G
Sbjct: 238 --ESIIVFHGNEADKKQQQRLMQKNIRCIEIARRSEGLDLNEVLDVIGNDGIHDLWIEAG 295

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
                SF+   L++  ++Y +  ++G   +P+
Sbjct: 296 GTCFQSFLKENLINRALIYIAPKILGSTAMPA 327


>gi|153814754|ref|ZP_01967422.1| hypothetical protein RUMTOR_00969 [Ruminococcus torques ATCC 27756]
 gi|145847785|gb|EDK24703.1| hypothetical protein RUMTOR_00969 [Ruminococcus torques ATCC 27756]
          Length = 395

 Score =  185 bits (470), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 122/357 (34%), Positives = 189/357 (52%), Gaps = 21/357 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A++ ++   G T+ NP V  +IVKDG +IG G     G  HAE  A+    E 
Sbjct: 23  DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGKIIGEGYHKKYGELHAERNAIASLTES 82

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GA  YVTLEPC H+G++PPC + IIE  IR+VV+   DP+ +V+G+G+Q L + G+ +
Sbjct: 83  AEGAVIYVTLEPCCHHGKTPPCTEAIIEQKIRKVVIGSRDPNPKVAGKGVQMLREAGVTV 142

Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           V+  M  E      +F H Y+T    K  ++ +K A++ D  I      S  ITG  ++ 
Sbjct: 143 VEDFMREECDQLNPVFFH-YITT---KTPYVVMKYAMTLDGKIATKTGASKWITGESARK 198

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +V  +R Q   I+ GIGTVLADDP L  R+ G +  SP+RI+ D   ++   S+I+K+A 
Sbjct: 199 EVQHMRHQYMGIMAGIGTVLADDPMLNVRVEGWK--SPVRIVCDSKLRIPPGSQIVKSAE 256

Query: 242 LAPVIIV---TENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEG 294
               I+     +N    + +      +  IYC    +  DLKKL+  L  RG+ S+L+EG
Sbjct: 257 KYRTIVAYAEQKNAKEKIKI-LHTMGVETIYCPDEKNQIDLKKLMADLGNRGIDSILLEG 315

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           G  +  S +   +V  +  + +  + G     +P+E   +E     V   Y  +D+C
Sbjct: 316 GGTLNDSALRVGIVKEVQAFVAPKLFGGVAGKTPVEGIGVELPSEAVELKY--TDIC 370


>gi|29653981|ref|NP_819673.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Coxiella
           burnetii RSA 493]
 gi|29541244|gb|AAO90187.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Coxiella
           burnetii RSA 493]
          Length = 354

 Score =  185 bits (470), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 113/332 (34%), Positives = 175/332 (52%), Gaps = 10/332 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  SS D  ++  AL  +    G  + NPSV  ++VKD  +I  G     G PHAEV+A+
Sbjct: 1   MNDSSLD--YLKKALSLAEIRRGFCAPNPSVGAVVVKDDKIISTGFHKRSGLPHAEVEAI 58

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           +  G++ARGA  YVTLEPC H+G++PPC   II+ GI+ V   + DP++ V G+G++ L 
Sbjct: 59  KSLGDKARGAALYVTLEPCCHFGKTPPCTDLIIQSGIKAVYYGLHDPNLAVCGKGIEQLQ 118

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           + G+    +   E   F  +Y      KR  +T K+A+S D  I       V +TG   +
Sbjct: 119 RAGVNCFLIELPEINAFYESYRYWIKHKRPWVTAKLALSLDGKIVGNEGKPVRLTGEGLR 178

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              H  R +SDA+L  I T+L DDP+L  RL G +   P+  ILD H +L L++ I +TA
Sbjct: 179 QYTHERRKKSDALLTTINTILTDDPKLNVRLQGEEIKKPI-YILDTHLRLPLNALIHQTA 237

Query: 241 LLAPVIIVTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295
               +I+   N+ D        +KNI  I    R    DL ++L ++   G+  L +E G
Sbjct: 238 --ESIIVFHGNEADKKQQQRLMQKNIRCIEIARRSEGLDLNEVLDVIGNDGIHDLWIEAG 295

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
                SF+   L++  ++Y +  ++G   +P+
Sbjct: 296 GTCFQSFLKENLINRALIYIAPKILGSTAMPA 327


>gi|24111792|ref|NP_706302.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Shigella flexneri 2a str. 301]
 gi|30061909|ref|NP_836080.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Shigella flexneri 2a str. 2457T]
 gi|24050580|gb|AAN42009.1| bifunctional pyrimidine deaminase/reductase [Shigella flexneri 2a
           str. 301]
 gi|30040153|gb|AAP15886.1| bifunctional pyrimidine deaminase/reductase [Shigella flexneri 2a
           str. 2457T]
 gi|281599746|gb|ADA72730.1| putative Pyrimidine reductase, riboflavin biosynthesis [Shigella
           flexneri 2002017]
 gi|313646969|gb|EFS11426.1| riboflavin biosynthesis protein RibD [Shigella flexneri 2a str.
           2457T]
 gi|332761693|gb|EGJ91972.1| riboflavin biosynthesis protein RibD [Shigella flexneri 2747-71]
 gi|332764291|gb|EGJ94527.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-671]
 gi|332768519|gb|EGJ98702.1| riboflavin biosynthesis protein RibD [Shigella flexneri 2930-71]
 gi|333007890|gb|EGK27366.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-218]
 gi|333022021|gb|EGK41266.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-304]
          Length = 367

 Score =  185 bits (470), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 190/371 (51%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 QRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++           E+     + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A   + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGVLLQAGLVDELIVYIAPKLLGSDARGLCSLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|218246081|ref|YP_002371452.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 8801]
 gi|218166559|gb|ACK65296.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 8801]
          Length = 360

 Score =  185 bits (470), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 111/338 (32%), Positives = 184/338 (54%), Gaps = 5/338 (1%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M    FD + M   L+ +R  +G TS NP V  +IV++G ++G G     G PHAE+ AL
Sbjct: 1   MNSPDFDQQMMQRCLQLARQALGQTSPNPLVGSVIVQNGEIVGEGFHPKAGEPHAEIFAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +A E A+GAT YV+LEPC+HYGR+PPC   +I  G+ +VVV + DP+  VSG+G++ L 
Sbjct: 61  RQAQERAKGATVYVSLEPCNHYGRTPPCTDALIAAGVSKVVVGMVDPNPLVSGKGVEKLQ 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI +V  + ES  +    A++ R +  +    LK A++ D  I      S  ITG  S
Sbjct: 121 ESGIEVVVGVEESACRQLNEAFIHRILHHQPLGILKYAMTLDGKIAATTGHSAWITGTAS 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           +  VH +RA  DA++VG  T+  D+P LT   + G+   +P+R+++     L  ++ + +
Sbjct: 181 RQLVHQVRAACDAVIVGGNTLRKDNPNLTTHEVAGV---NPLRVVMSKTLDLPSEANLWQ 237

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
           T + + ++I     +  L    R + + +I         ++ +L  RG++S+L E G  +
Sbjct: 238 TDIASTLVITERTRNSKLQAQLRNRGVEVIELASVTPSGVMQLLYERGLSSVLWECGGTL 297

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
           A   I   ++  I+ + +  +IG    P P+ +  LEK
Sbjct: 298 AAQAIADGVIQKIMAFIAPKIIGGTIAPCPIGDLGLEK 335


>gi|81299014|ref|YP_399222.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Synechococcus elongatus PCC 7942]
 gi|81167895|gb|ABB56235.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Synechococcus elongatus PCC 7942]
          Length = 368

 Score =  185 bits (470), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 174/320 (54%), Gaps = 3/320 (0%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S  D ++M   L  +    G T+ NP V C+IV+   ++G G     G PHAEV AL +
Sbjct: 1   MSDRDRQYMQRCLELAAQAAGQTAPNPMVGCIIVQGEEIVGEGFHPAAGQPHAEVFALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ ARGAT YV LEPC+HYGR+PPC++ ++  G++RVVV + DPD RV+G G+  L Q 
Sbjct: 61  AGDRARGATLYVNLEPCNHYGRTPPCSEAVVAAGLKRVVVGMVDPDPRVAGGGIARLQQA 120

Query: 123 GIIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V   +E    +    A++ R  ++R    LK A++ D  I  +   S  ++   S+ 
Sbjct: 121 GIEVTVGVEQAACEQMNEAFVWRVTQRRPFGILKYAMTLDGRIAASTGHSAWVSSPESRR 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           QVH LR+Q DA++VG  TV  D+P LTC  + + +  P+R+++     L L++ + +T +
Sbjct: 181 QVHSLRSQVDAVIVGGNTVRLDNPRLTC--HDISDRHPLRVVMSRRLDLPLEANLWQTDI 238

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
              ++   E  D         + + ++        ++   L  RG+++LL E G  +A +
Sbjct: 239 APTLVFTEETADRDRWRKLEDQGVEVVVRSPLTPSEVSAELFNRGLSTLLWECGGTLAAA 298

Query: 302 FINSRLVDSIILYRSQIVIG 321
            +    +  ++ + +  +IG
Sbjct: 299 ALREGQIQKLLAFIAPKLIG 318


>gi|325924396|ref|ZP_08185931.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas
           gardneri ATCC 19865]
 gi|325545120|gb|EGD16439.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas
           gardneri ATCC 19865]
          Length = 364

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/328 (36%), Positives = 185/328 (56%), Gaps = 4/328 (1%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  ++ D R M+ ALR +      T  NP V C+IV+DG+ +G G     G  HAEV AL
Sbjct: 1   MSATADDHRCMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGAHAEVFAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AG  ARGATAYVTLEPC+HYGR+PPCA  +IE G+RRVV  + DP  +V+G G   L 
Sbjct: 61  RAAGALARGATAYVTLEPCAHYGRTPPCALALIEAGVRRVVAAMADPFPQVNGGGFALLR 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI ++  +M+++ ++    +L+R    R  + +K+  S D    +A   S  ITG  +
Sbjct: 121 EAGIEVLSGVMQAQARVLNQGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITGADA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-SPMRIILDPHFKLSLDSKIIK 238
           +  V   RA++ AIL G GTVLADDP +T RL        P+R++LD   + +L  + I+
Sbjct: 181 RADVQRWRARAGAILTGAGTVLADDPSMTVRLGDDTPFVPPLRVVLDAGLR-TLACENIR 239

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
               AP + V  +D    +L   +     ++    DL  +L  L  RG+  + VE GA +
Sbjct: 240 QG-NAPTLYVHGDDVLPRSLDVAQFVAMPLHAGRFDLSAVLASLAERGINEVHVEAGATL 298

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP 326
           + + +++ LVD +++Y + +++G+   P
Sbjct: 299 SGALLHAGLVDELLVYMAPVLLGDTARP 326


>gi|319760369|ref|YP_004124307.1| riboflavin biosynthesis protein RibD [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039083|gb|ADV33633.1| riboflavin biosynthesis protein RibD [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 383

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/349 (35%), Positives = 175/349 (50%), Gaps = 41/349 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  ++S A + +R     T  NP+V C+IVKD  VIG G     G  HAE+ AL  AG  
Sbjct: 9   DIGYLSRAFQLARKGRFTTMPNPNVGCVIVKDNHVIGEGYHMRAGENHAEINALSVAGNF 68

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSHYGR+PPC   +I+ GI+RVVV + DP   ++GRG+Q L Q GI+V
Sbjct: 69  AKGATAYVTLEPCSHYGRTPPCTTALIKSGIKRVVVSMLDPHPDLTGRGIQLLKQSGILV 128

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     ++ R       I LK+A S D  + M+   S  IT   S+  V  
Sbjct: 129 SHSIMLSEAESINKGFIKRIRTGMPWIKLKLASSLDGRVAMSSGESKWITSVQSRQDVQC 188

Query: 186 LRAQSDAILVGIGTVLADDPELTCR------------LNGLQEHSPMRIILDPHFKLSLD 233
            RA+SD IL    TVL D+P L  R            +NG Q   P+R+I+D        
Sbjct: 189 FRAESDVILSTASTVLMDNPRLNVRWSCFSKEMKNIYINGNQIRHPLRVIID-------- 240

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC---------------DCRDLKKL 278
                T  + P     +N+  V+ +  +K N+N                   +  +LKKL
Sbjct: 241 ----STNRILPTHRFIQNEGGVILVRIKKDNLNWPKSVEQLLVSPIVNKSGLNQINLKKL 296

Query: 279 LTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           +  L     + S+ VE G  ++ + ++  LVD +ILY++   +G    P
Sbjct: 297 MQYLACYLKINSVWVESGPTLSGALLDIGLVDEVILYQAIKFLGSNAKP 345


>gi|300704870|ref|YP_003746473.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
           deaminase (N-terminal);
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Ralstonia solanacearum CFBP2957]
 gi|299072534|emb|CBJ43884.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
           deaminase (N-terminal);
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Ralstonia solanacearum CFBP2957]
          Length = 370

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/329 (36%), Positives = 173/329 (52%), Gaps = 10/329 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S FD   M  AL  +   +  T+ NP V C++V+D  +IG G T   G  HAE+QA+++A
Sbjct: 3   SDFDHVMMQRALALAENGLFTTTPNPRVGCVLVRDDTIIGEGFTQPPGQDHAEIQAIKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G + RGATAYVTLEPCSH+GR+PPCA  ++E GI RVV  ++DP+  VSGRGLQ L 
Sbjct: 63  QARGHDVRGATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPAVSGRGLQKLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI V   ++E E +     +++R       + +K+  S D    +    S  IT   +
Sbjct: 123 EAGIDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITEAEA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +N  H  RA++ AIL GIGTV  D+P LT R        P RI++D    + LD+ I+  
Sbjct: 183 RNDGHRWRARACAILTGIGTVREDNPRLTVRAIPTPRQ-PRRILIDSGLDVPLDAHILSA 241

Query: 240 -ALLAPVIIVTENDDPVLALAFRKKNINIIY---CDCR-DLKKLLTILVGRGVTSLLVEG 294
                P +I     +     A  +    +I     D + DL  +L  L  R +  L VE 
Sbjct: 242 DDHREPTLIFAARPEAGRMRALAEHGAEVILLPNADGKVDLPAMLRELGRREINELHVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           G  +  S +   LVD I++Y +  V+G G
Sbjct: 302 GYKLNGSLLREGLVDEILVYLAPKVLGSG 330


>gi|218962081|ref|YP_001741856.1| riboflavin biosynthesis protein RibD [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730738|emb|CAO81650.1| riboflavin biosynthesis protein RibD [Candidatus Cloacamonas
           acidaminovorans]
          Length = 368

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/329 (35%), Positives = 189/329 (57%), Gaps = 12/329 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           ++M  A++ +    G  S NP V  +IVK+  VI  G T   G  H+E+QAL++AG++A+
Sbjct: 8   QYMQRAIKVAEKARGKCSPNPFVGSVIVKNNQVISEGWTLEYGSDHSEIQALKKAGKKAK 67

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
            AT +VTLEPCSHYG++PPCAQ II+ GI+ V + + DP+  V G+G+  L + GI V  
Sbjct: 68  DATLFVTLEPCSHYGKTPPCAQAIIDAGIKEVYIGIYDPNPLVKGKGIAMLKEAGIDVHY 127

Query: 129 -MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
             +E + +  L  YL    ++R  +TLK A++ D         +  ITG  ++   H LR
Sbjct: 128 GFLEEKIRTQLECYLCYIQKERPFVTLKTALTLDGKYAAEDGTAHWITGKKAREYAHQLR 187

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           +++D +L GI T+L DDP L  RL G     P+R++LDP+ K+ + S  +  +   P ++
Sbjct: 188 SENDVVLTGIMTILFDDPRLNVRLPG-NYKQPLRVVLDPYLKIPVLSYFVSISAKFPGMV 246

Query: 248 VTENDDPVLALA--FRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHS 301
           +T  D+     A   R+K + I   + +D    L ++L +L      S+L+E G+ +A +
Sbjct: 247 ITSPDNLQTDKADILRQKGVKIEALETKDGHFNLHEVLNLLYKMNYYSVLLETGSGIAEA 306

Query: 302 FINSRLVDSII-LYRSQIVIGEGGIPSPL 329
           F+   L+D II +Y ++I+   GG  SPL
Sbjct: 307 FLKEELIDKIIFIYGAKIL---GGTKSPL 332


>gi|166030622|ref|ZP_02233451.1| hypothetical protein DORFOR_00288 [Dorea formicigenerans ATCC
           27755]
 gi|166029624|gb|EDR48381.1| hypothetical protein DORFOR_00288 [Dorea formicigenerans ATCC
           27755]
          Length = 377

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 184/335 (54%), Gaps = 17/335 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++   G T+ NP V  +IVKDG +IG G  A  G  HAE  A+    E 
Sbjct: 5   DQDYMKRAIELAKKGEGWTNPNPMVGAVIVKDGRIIGEGYHARCGELHAERNAIASLTES 64

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GAT YVTLEPC HYG++PPC + I+E  I++VV+   DP+ +V+G+G + L   G+ +
Sbjct: 65  AEGATLYVTLEPCCHYGKTPPCTEAILEQKIKKVVIGSRDPNPKVAGKGAKILRDAGVAV 124

Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           V+  M  +      IF H Y+T    K  ++ +K A++ D  I      S  IT   ++ 
Sbjct: 125 VEDFMRDKCDELNPIFFH-YITT---KTPYVVMKYAMTLDGKIATKTGASKWITQEAARR 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +V  +R +   I+VGIGTVLADDP L  R+ GL+  SP+RII D   ++ LDS+I+K+A 
Sbjct: 181 EVQYMRHRYMGIMVGIGTVLADDPMLNVRVEGLK--SPVRIICDSKLRIPLDSQIVKSAR 238

Query: 242 LAPVIIVTENDDPVLALA--FRKKNINIIYC-DCR---DLKKLLTILVGRGVTSLLVEGG 295
               I+   + + V       +   + I++C D +   +LK L+  L    + S+L+EGG
Sbjct: 239 EYRTIVAYADLENVEKKKEILQTMGVEIVFCPDMKKHVNLKHLMEYLGKENIDSILLEGG 298

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
             +  S + + +V  +  + +  + G  G  +P++
Sbjct: 299 GTLNDSALRAGVVQEVQAFIAPKIFGGAGSRTPVD 333


>gi|331088370|ref|ZP_08337289.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330408614|gb|EGG88080.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 375

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 122/357 (34%), Positives = 189/357 (52%), Gaps = 21/357 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A++ ++   G T+ NP V  +IVKDG +IG G     G  HAE  A+    E 
Sbjct: 3   DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGKIIGEGYHKKYGELHAERNAIASLTES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GA  YVTLEPC H+G++PPC + IIE  IR+VV+   DP+ +V+G+G+Q L + G+ +
Sbjct: 63  AEGAVIYVTLEPCCHHGKTPPCTEAIIEQKIRKVVIGSRDPNPKVAGKGVQMLREAGVTV 122

Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           V+  M  E      +F H Y+T    K  ++ +K A++ D  I      S  ITG  ++ 
Sbjct: 123 VEDFMREECDQLNPVFFH-YITT---KTPYVVMKYAMTLDGKIATKTGASKWITGESARK 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +V  +R Q   I+ GIGTVLADDP L  R+ G +  SP+RI+ D   ++   S+I+K+A 
Sbjct: 179 EVQHMRHQYMGIMAGIGTVLADDPMLNVRVEGWK--SPVRIVCDSKLRIPPGSQIVKSAE 236

Query: 242 LAPVIIV---TENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEG 294
               I+     +N    + +      +  IYC    +  DLKKL+  L  RG+ S+L+EG
Sbjct: 237 KYRTIVAYAEQKNAKEKIKI-LHTMGVETIYCPDEKNQIDLKKLMADLGNRGIDSILLEG 295

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           G  +  S +   +V  +  + +  + G     +P+E   +E     V   Y  +D+C
Sbjct: 296 GGTLNDSALRVGIVKEVQAFVAPKLFGGVAGKTPVEGIGVELPSEAVELKY--TDIC 350


>gi|297621291|ref|YP_003709428.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Waddlia chondrophila WSU 86-1044]
 gi|297376592|gb|ADI38422.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Waddlia chondrophila WSU 86-1044]
          Length = 339

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/301 (39%), Positives = 169/301 (56%), Gaps = 24/301 (7%)

Query: 28  NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87
           NP V C++VK+G ++G G     G PHAEV AL EAG+ ARGATAYVTLEPC H GR+ P
Sbjct: 24  NPWVGCILVKNGQIVGLGHHPECGLPHAEVYALREAGQNARGATAYVTLEPCVHTGRTLP 83

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG-KIFLHAYLTRQV 146
           C   +IE G+ RVVV V+DPD +VSG G+  L   GI V   +E E  ++ L  YL  + 
Sbjct: 84  CIHALIEAGVARVVVGVEDPDPKVSGSGIAALKIAGIKVTVGVEREAVELSLAPYLHHRR 143

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             R  +  K A+S D     +   S  I+   ++   H +RA+S AIL+G GT + D P+
Sbjct: 144 TGRPFVIAKTALSIDGRAAASDKTSQWISCEAARRDAHEMRAESQAILIGAGTAVKDSPQ 203

Query: 207 LTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
           LT R +N L +  P+R++LDP+ K+  DS +     LAP ++ +E  +P           
Sbjct: 204 LTVRQVNKLPKKQPLRVLLDPNGKVPHDSPLYDLD-LAPTLVFSEKMEP----------- 251

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
                     +K+L+IL  +GV  LL+EGG      F+   L+D +I+Y    ++G  G+
Sbjct: 252 ----------EKILSILGEKGVIQLLIEGGPTTITQFLQQHLIDRLIVYTGPCLLGSDGL 301

Query: 326 P 326
           P
Sbjct: 302 P 302


>gi|193212377|ref|YP_001998330.1| riboflavin biosynthesis protein RibD [Chlorobaculum parvum NCIB
           8327]
 gi|193085854|gb|ACF11130.1| riboflavin biosynthesis protein RibD [Chlorobaculum parvum NCIB
           8327]
          Length = 371

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 121/358 (33%), Positives = 186/358 (51%), Gaps = 13/358 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D   M   L  +    G  S NP V  +IV DG VIG G     G PHAE  A+    +E
Sbjct: 11  DEGHMRRCLELAERGAGSVSPNPMVGSVIVHDGRVIGEGWHQKYGGPHAEPHAIASVEDE 70

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           A  R +T YV LEPCSH+G++PPCA  I+E  I RVVV   DP  +V+G+G+  L + G+
Sbjct: 71  ALLRQSTLYVNLEPCSHHGKTPPCADLIVEKCIPRVVVGCLDPHKKVAGKGIARLREAGV 130

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V   ++E+E +    A++T   + R  + LK A + D  I  +   S  ITG  S+ +V
Sbjct: 131 EVTVGVLEAESERLNEAFMTSHRKGRPFVALKTAQTLDGRIATSLGASKWITGEASRCEV 190

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H LR   DA+L G  T LADD ELT R    ++  P+R++LDP  ++  + +I   A   
Sbjct: 191 HRLRCAYDAVLCGASTALADDAELTVRFCAGRQ--PLRVLLDPRLQVPHEFRIFNDAAKT 248

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
            V  + +  +PVL      + + ++         DL ++   L  R V S++VEGG+ ++
Sbjct: 249 LVFALRDEAEPVLVSQLEARGVEVVLIGQSEGTLDLAQVFAELHRRRVLSVMVEGGSRLS 308

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS--PLE--EGYLEKNFMCVRRDYFGSDVCLE 353
            + + S +VD   ++ +  + G+ G+PS  PL+     +       R + FG D+ +E
Sbjct: 309 AAMVRSGIVDKYYVFIAPKLFGDDGLPSFGPLDVIRPDMATKLSFTRVERFGEDLLVE 366


>gi|238024083|ref|YP_002908315.1| putative deaminase [Burkholderia glumae BGR1]
 gi|55509025|gb|AAV52810.1| putative deaminase [Burkholderia glumae BGR1]
 gi|148562469|gb|ABQ88346.1| putative deaminase [Burkholderia glumae]
 gi|237878748|gb|ACR31080.1| Putative deaminase [Burkholderia glumae BGR1]
          Length = 384

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/336 (35%), Positives = 184/336 (54%), Gaps = 31/336 (9%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
           + D  +M+ AL  +   +  T+ NP V C+IVK G++IG G T   G  HAEV+A+++A 
Sbjct: 18  ALDRAWMAKALELAARGLYTTTPNPRVGCVIVKHGMLIGEGYTQPAGHDHAEVRAMKDAR 77

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
             G E RGATAYVTLEPCSHYGR+PPCA+ ++E GI  VV  ++DP+ +VSGRG   L +
Sbjct: 78  SRGHELRGATAYVTLEPCSHYGRTPPCAKGLVEAGIATVVAAMEDPNPQVSGRGYAMLRE 137

Query: 122 KGIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI V   ++E E +     +++R    R  + +K+A S D    +    S  ITG  ++
Sbjct: 138 AGIEVRGGVLEDEARELNIGFVSRMTRARPWVRMKMAASLDGRSALPDGASQWITGSAAR 197

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKT 239
              H  RA++ +IL GIGTV  DDP+L  R  G+     P R+++D    L  +++++  
Sbjct: 198 ADGHAWRARACSILTGIGTVRRDDPQLNVR--GIDTPRQPRRVLIDARLDLPHEARLM-- 253

Query: 240 ALLAPVIIVTEND--------------DPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285
           A   P++   E D                V++LA  + ++        DL  +L  L GR
Sbjct: 254 AGPPPLVFCGELDASARARADALRARGAEVVSLASARGSV--------DLAAVLAELGGR 305

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           G   L VE G  ++ + + + LVD +++Y +  ++G
Sbjct: 306 GDNELHVEAGRTLSGALLRAGLVDELLVYVAPSLLG 341


>gi|313673619|ref|YP_004051730.1| riboflavin biosynthesis protein ribd [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940375|gb|ADR19567.1| riboflavin biosynthesis protein RibD [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 385

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 121/321 (37%), Positives = 170/321 (52%), Gaps = 7/321 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A++ +    G   TNP V  ++VK+G VIGRG     G PHAE++AL++  E   G 
Sbjct: 8   MDEAIQLALMGKGYNYTNPIVGAVVVKNGKVIGRGYHTGFGMPHAEIEALKDCEESPEGG 67

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
             YVTLEPCS  G++PPC   II+ GI+RV + V DP+   SG+ ++ L+  GI V    
Sbjct: 68  DLYVTLEPCSTTGKTPPCTDAIIKSGIKRVFIGVVDPNPNHSGKAIKILNDAGIEVFLGF 127

Query: 131 ESEGKIFLHAYLTRQVEKRS-HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
                  +    T+ + KR  + TLK A S D MI  +   S  I+G  S+  VH LR+ 
Sbjct: 128 NEHVCAEIIEDFTKFILKRQPYFTLKAASSIDGMIATSTGDSKWISGESSRIYVHYLRSV 187

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           SD I+VGI TV  DDP L  R N  +E  P++IILD    +S +SK++K      +I  T
Sbjct: 188 SDGIIVGINTVKNDDPLLNVR-NFNREKEPLKIILDSKLSISPESKVVKDFGKYLIIATT 246

Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
             DD  +    ++  + ++ C  +    DL  L   LV   + ++ VEGG  V  SFI  
Sbjct: 247 VRDDSKMD-NLKRYGVRVLICKEKNGFVDLMDLSDKLVSLNLLNIFVEGGGKVFASFIKE 305

Query: 306 RLVDSIILYRSQIVIGEGGIP 326
            LVD    + S  VIG  G+P
Sbjct: 306 GLVDRFYHFISPKVIGGDGVP 326


>gi|238921881|ref|YP_002935395.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Eubacterium
           eligens ATCC 27750]
 gi|238873553|gb|ACR73261.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Eubacterium
           eligens ATCC 27750]
          Length = 373

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 124/368 (33%), Positives = 192/368 (52%), Gaps = 25/368 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D  +M  A+  ++   G  + NP V  +IVKD  +IG G     G  HAE  AL   
Sbjct: 10  SKQDEFYMRRAIELAKNGTGWVNPNPLVGAVIVKDDRIIGEGWHRKYGELHAERDALSRC 69

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            E+  GAT YVTLEPC H+G+ PPC + +++ GI RVV+   DP+  VSG+G+++L + G
Sbjct: 70  MEDTSGATIYVTLEPCCHHGKQPPCTEALVQAGISRVVIGSMDPNPLVSGKGVKYLEEHG 129

Query: 124 IIVDRMMESE-----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
           I V+  + +E       +F H Y+     K  ++ +K A + D  I      S  ITG  
Sbjct: 130 IKVEGCVCNEECLAMNYVFFH-YIRN---KEPYVVMKTAQTLDGKIATYKGLSKWITGEQ 185

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKII 237
           ++  VH  R +  AI+VG+GTV+AD+P L CR   +   H+P+RII D   +  LDS+I+
Sbjct: 186 ARENVHADRHRYAAIMVGVGTVIADNPMLDCRSTAISNPHNPVRIICDSRLRTPLDSRIV 245

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVE 293
           K+A   P II T + D      +      +I         DLK+L+ IL  +G+ S+++E
Sbjct: 246 KSAGQIPTIIATCSTDSDRKSLYENAGCEVIITKESEQHVDLKELMNILGEKGIDSVILE 305

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG--------EGGIPSPLEEGYLEKNFMCVRRDY 345
           GG  +  S + + +V+ +  Y +  + G        EG   + ++E Y  +N   VR   
Sbjct: 306 GGGTLNFSALQAGIVNRVQTYIAPKIFGGVDSKTAVEGQGIANVDEAYRLRN-KTVR--L 362

Query: 346 FGSDVCLE 353
            G D+ +E
Sbjct: 363 LGDDILIE 370


>gi|303241094|ref|ZP_07327603.1| riboflavin biosynthesis protein RibD [Acetivibrio cellulolyticus
           CD2]
 gi|302591354|gb|EFL61093.1| riboflavin biosynthesis protein RibD [Acetivibrio cellulolyticus
           CD2]
          Length = 362

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/328 (35%), Positives = 180/328 (54%), Gaps = 10/328 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           MS A+  ++   G T+ NP V  +IVKD  +I  G     G  HAEV A + A E+  G 
Sbjct: 1   MSRAIELAKKGWGRTNPNPLVGAVIVKDERIIAEGFHEVIGGAHAEVSAFKNAVEDVAGG 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129
           T YV LEPCSHYGR+PPCA+ IIE  I++VVV + DP+ +VSGRG+Q L   GI V+  +
Sbjct: 61  TLYVNLEPCSHYGRTPPCAKAIIEAKIKKVVVAMIDPNPKVSGRGVQMLRDAGIEVEVGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E E K     ++   V K+  + LK A++ D  I      S  +T   S+  VH++R +
Sbjct: 121 LEDEAKKLNEIFINYVVNKKPFVILKTAMTIDGKIASVSGDSKWVTSEASRGYVHIIRDR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
             +I+VGI T++ D+P LT RLN      P+RI++D    +  DS+++ +   A V++ T
Sbjct: 181 VASIMVGINTIVKDNPMLTTRLNDKVGTDPIRIVVDSKGIIPEDSRVLNSDSKAVVVLAT 240

Query: 250 ENDDPVLA---LAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            ++  +L    +    K + II  D      DL KL   L    + S+L+EGG  +  + 
Sbjct: 241 TSN--ILKEKEMYLIDKGVKIIKADGADGRVDLVKLTEELYKLEIDSILLEGGGNLNAAA 298

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLE 330
           + + +VD  + + +  ++G     +P+E
Sbjct: 299 LEAGIVDKAMFFIAPKILGGKEAVTPVE 326


>gi|257059130|ref|YP_003137018.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 8802]
 gi|256589296|gb|ACV00183.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 8802]
          Length = 360

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/339 (33%), Positives = 187/339 (55%), Gaps = 7/339 (2%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M    FD + M   L+ +R  +G TS NP V  +IV++G ++G G     G PHAE+ AL
Sbjct: 1   MNSPDFDQQMMQRCLQLARQALGQTSPNPLVGSVIVQNGEIVGEGFHPKAGEPHAEIFAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +A E A+GAT YV+LEPC+HYGR+PPC   +I  G+ +VVV + DP+  VSG+G++ L 
Sbjct: 61  RQAQERAKGATVYVSLEPCNHYGRTPPCTDALIAAGVSKVVVGMVDPNPLVSGKGVEKLQ 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI +V  + ES  +    A++ R +  +    LK A++ D  I      S  ITG  S
Sbjct: 121 ESGIEVVVGVEESACRQLNEAFIHRILHHQPLGILKYAMTLDGKIAATTGHSAWITGTAS 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           +  VH +RA  DA++VG  T+  D+P LT   + G+   +P+R+++     L  ++ + +
Sbjct: 181 RQLVHQVRAACDAVIVGGNTLRKDNPNLTTHEVAGV---NPLRVVMSKTLDLPSEANLWQ 237

Query: 239 TALLAPVIIVTEND-DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
           T  +AP +++TE   +  L    R + + +I         ++ +L  RG++S+L E G  
Sbjct: 238 TD-IAPTLVITERGRNSKLQAQLRDRGVEVIELASVTPSGVMQLLYERGLSSVLWECGGT 296

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
           +A   I   ++  I+ + +  +IG    P P+ +  LEK
Sbjct: 297 LAAQAIADGVIQKIMAFIAPKIIGGTIAPCPIGDLGLEK 335


>gi|85372857|ref|YP_456919.1| riboflavin-specific deaminase/reductase [Erythrobacter litoralis
           HTCC2594]
 gi|84785940|gb|ABC62122.1| riboflavin-specific deaminase/reductase [Erythrobacter litoralis
           HTCC2594]
          Length = 325

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 130/336 (38%), Positives = 172/336 (51%), Gaps = 47/336 (13%)

Query: 24  LTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYG 83
           +++ NP+V C+IVK   VIGRG T  GG PHAE  ALE+AG++ARGAT YVTLEPC+H  
Sbjct: 24  VSAPNPAVGCIIVKQDRVIGRGWTRVGGRPHAEAAALEQAGQDARGATIYVTLEPCAHES 83

Query: 84  -RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
            R P CA  ++    +RVV+   DPD R  G G+  L + GI V+ +        L  +L
Sbjct: 84  DRGPSCADLLVAARPQRVVLAEVDPDRRTHGAGIARLRRSGITVETLPSPAAAASLAGFL 143

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
           TR+   R H+TLK+A+S D  I +A   S  ITG  ++   H  RA SDAILVG GT  A
Sbjct: 144 TRERLGRPHVTLKLALSLDGCIALASGESQWITGEEARAHCHSRRAMSDAILVGGGTWRA 203

Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
           D P L  RL GL++ SP R++L             +   +  V I+ E      A   R 
Sbjct: 204 DKPRLDVRLPGLEDRSPQRVVL------------TRGVPIDGVRIINEP-----AQIDRL 246

Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
           +    +Y                      VEGGA  A SF+   LVD + +YR+ IVIG 
Sbjct: 247 EAAQYLY----------------------VEGGAGAAASFLAENLVDRLDIYRAPIVIG- 283

Query: 323 GGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLE 353
           GG P+    G  +      ++  V R   GSD C E
Sbjct: 284 GGKPAFGNIGLADLTSAHGSWKLVERRQLGSD-CYE 318


>gi|323164205|gb|EFZ50012.1| riboflavin biosynthesis protein RibD [Shigella sonnei 53G]
 gi|323170496|gb|EFZ56146.1| riboflavin biosynthesis protein RibD [Escherichia coli LT-68]
          Length = 361

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 131/367 (35%), Positives = 190/367 (51%), Gaps = 28/367 (7%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+A+GA
Sbjct: 1   MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
           TAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V   +
Sbjct: 61  TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V   RAQ
Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQRAQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDSKIIK 238
           S AIL    TVLADDP LT R + L E +           P+RI++D   +++ + +I++
Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHRIVQ 240

Query: 239 ----TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
               T         +E  + V  L   +   ++      DL  L+  L  + + S+ VE 
Sbjct: 241 QPGETWFARTQEDSSEWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSIWVEA 294

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349
           G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      + G D
Sbjct: 295 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRHVGPD 353

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 354 VCLHLVG 360


>gi|206890490|ref|YP_002249110.1| riboflavin biosynthesis protein RibD [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742428|gb|ACI21485.1| riboflavin biosynthesis protein RibD [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 370

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 119/341 (34%), Positives = 185/341 (54%), Gaps = 17/341 (4%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYG- 83
           TS NP V  +IVK+G +I  G     G PHAE +A+  A E  +GAT YVTLEPC H   
Sbjct: 26  TSPNPMVGAVIVKNGKIISEGYHKKAGLPHAEAEAIRNANESLKGATLYVTLEPCCHKDK 85

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYL 142
           ++PPC   II  GI RVV+ + DP+ +VSG+G++ L+  GI +++ ++E E K     Y+
Sbjct: 86  KTPPCTDAIINSGINRVVIGMRDPNPKVSGKGVEILNNHGIKVIEGVLEEEVKKLNEFYI 145

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
                 R  + LKIA++ D  I      S  IT   S+  VHL+R++ DA+L   GTVL 
Sbjct: 146 KYITTSRPFVILKIAMTLDGKIATPLGESKWITSEKSRKFVHLIRSRVDALLSAYGTVLK 205

Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA--LLAPVIIVTENDDPVLALAF 260
           D+P  T R+ G +  +P+R+I+DP  K+ L+  +       +A V     ND  +  L  
Sbjct: 206 DNPMFTSRIKGGK--NPLRVIIDPELKIPLNYHVYNPPPNTIAVVHEKKLNDKNIKHLIH 263

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
           R   I     +  DL+ L+  L  R +TSL++EGG+++    + S +VD ++++ +  +I
Sbjct: 264 RGIEIVSFSSEKVDLQWLMEELGKRQITSLMIEGGSSLNSYALWSGIVDKLMIFIAPKII 323

Query: 321 G--------EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           G         G I   L+E +  K+   ++   FG D+ +E
Sbjct: 324 GGAQSYPSIGGNIYKNLDEAFEIKD---LKIRMFGGDIFIE 361


>gi|186680558|ref|YP_001863754.1| riboflavin biosynthesis protein RibD [Nostoc punctiforme PCC 73102]
 gi|186463010|gb|ACC78811.1| riboflavin biosynthesis protein RibD [Nostoc punctiforme PCC 73102]
          Length = 407

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/335 (34%), Positives = 177/335 (52%), Gaps = 11/335 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           + FD+R M   L  +R  +G TS NP V  +IVKDG ++G G     G PHAEV AL+ A
Sbjct: 36  TDFDSRMMLRCLELARRALGRTSPNPLVGAVIVKDGEIVGEGFHPRAGEPHAEVFALQAA 95

Query: 64  G--------EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           G          ARGAT YV LEPC+HYGR+PPC++ +I+ G+ +VVV + DP+  V+G G
Sbjct: 96  GVGAASPQENRARGATIYVNLEPCNHYGRTPPCSEGLIQAGVAKVVVGMVDPNPLVAGGG 155

Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           +  L   GI ++  + ES       A++ R + KR    LK A++ D  I      S  +
Sbjct: 156 IARLRAAGIEVLVGVEESACHQLNEAFVHRILYKRPLGILKYAMTLDGKIATTSGHSAWV 215

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           T   ++++VH LRA  DAI+VG  TV  D+P LT   + L+ H+P+R+++  H  L   +
Sbjct: 216 TSQEARSEVHQLRAACDAIIVGGNTVRQDNPYLTS--HHLEAHNPLRVVMSRHLNLPESA 273

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
            + KTA    +++  +  +P        + + I+          +  L  RG  S+L E 
Sbjct: 274 HLWKTADAPTLVLTQKGANPDFQELLLNQGVEIVELTSLTPDNAMAYLYERGFCSVLWEC 333

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
           G  +A S I    V  ++ + +  +IG    P+P+
Sbjct: 334 GGTLAASAIAQGAVQKVLAFIAPKIIGGSIAPTPV 368


>gi|213962287|ref|ZP_03390550.1| riboflavin biosynthesis protein RibD [Capnocytophaga sputigena
           Capno]
 gi|213954953|gb|EEB66272.1| riboflavin biosynthesis protein RibD [Capnocytophaga sputigena
           Capno]
          Length = 323

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/318 (35%), Positives = 170/318 (53%), Gaps = 30/318 (9%)

Query: 22  VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--RGATAYVTLEPC 79
           +G T  NP V C+IV DG +IG G     G PHAEV+A+    +++    +T YV+LEPC
Sbjct: 13  LGTTYPNPLVGCVIVHDGKIIGEGWHQKAGEPHAEVRAIASVKDKSLLAESTLYVSLEPC 72

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFL 138
           +HYG++PPCA  II   I RVV+   DP  +V+GRG++ L   G  V   +ME E +   
Sbjct: 73  NHYGKTPPCADLIITHRIPRVVIGTTDPFAKVAGRGIEKLRDAGCEVTVGVMEKECRELN 132

Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMIGMA---GCGSVPITGFISKNQVHLLRAQSDAILV 195
             + T   +KR +I LK A + D  I  A       V IT   ++ +VH +R++  AILV
Sbjct: 133 KRFFTFHEKKRPYIFLKWAETADGFIAPAHKDTLAPVWITDVYTRQEVHKMRSEEQAILV 192

Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD-- 253
           G+GTVLAD+P L  R       +P+R+I+DPH +   + K+     L P + +T  +   
Sbjct: 193 GVGTVLADNPSLDTR--DWYGKNPLRVIIDPHLRSPKEFKVWND--LQPTLFITNKEKVS 248

Query: 254 --------PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
                    ++ + F   N+    CD         +L  R + SL+VEGGA     FIN+
Sbjct: 249 DKNYGVQTEIIGIDF-THNVPQQICD---------LLYQRNIQSLIVEGGAYTLQQFINA 298

Query: 306 RLVDSIILYRSQIVIGEG 323
            L D + +Y+S++  G+G
Sbjct: 299 GLYDEMRIYKSEVSFGKG 316


>gi|110598480|ref|ZP_01386751.1| riboflavin biosynthesis protein RibD:Riboflavin-specific
           deaminase-like [Chlorobium ferrooxidans DSM 13031]
 gi|110339930|gb|EAT58434.1| riboflavin biosynthesis protein RibD:Riboflavin-specific
           deaminase-like [Chlorobium ferrooxidans DSM 13031]
          Length = 369

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 126/366 (34%), Positives = 195/366 (53%), Gaps = 17/366 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+  +  +    G  S NP V  +IV DG++IG G     G PHAEV A+    ++
Sbjct: 8   DTVYMNRCIELALKGGGTVSPNPMVGSVIVCDGVIIGEGFHERYGAPHAEVNAIASVADQ 67

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
              R +T YV LEPCSH+G++PPC+  IIE GI RVVV   DP V V+G+G+  L   GI
Sbjct: 68  ELLRRSTLYVNLEPCSHFGKTPPCSDLIIEKGIPRVVVGCRDPFVSVAGKGIAKLLGAGI 127

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            + + ++E+       A++         ++LK+A + D  I  +   S  ITG  ++ +V
Sbjct: 128 AVTEGVLEAACVKLNEAFIKSHTTGLPFVSLKLAETLDGKIATSLGASKWITGEAARMEV 187

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H LRA+ DA++VG  TV  DD ELT R       +P+R++LD    L ++SKI  T   A
Sbjct: 188 HRLRARYDAVVVGEATVRCDDAELTVR--HCSGRNPLRVVLDRRLSLPVESKIFNTE--A 243

Query: 244 PVIIVTENDDPVLALA--FRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
           P I+   +    L  A   R++ + +++        DL+++L  L   G+ S+LVEGG+ 
Sbjct: 244 PTILFASSAWEGLEKAGLLRERGVTVLFVREHAGELDLRQVLEELHKHGILSILVEGGSR 303

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR----DYFGSDVCLE 353
           ++ SFI  RLVD I ++ +  + G   + S    G    +   V +     +FGSD+ LE
Sbjct: 304 LSASFIRERLVDKIYMFIAPKLFGGDALSSFAPLGISIPDDAVVLKFETPRFFGSDLLLE 363

Query: 354 YIGKNL 359
              ++L
Sbjct: 364 AYVQSL 369


>gi|73540480|ref|YP_295000.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Ralstonia eutropha JMP134]
 gi|72117893|gb|AAZ60156.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Ralstonia eutropha JMP134]
          Length = 371

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 110/309 (35%), Positives = 171/309 (55%), Gaps = 12/309 (3%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSH 81
           T+ NP V C++ K+G +IG+G T   G  HAE+QAL++A   G +  GATAYVTLEPCSH
Sbjct: 24  TTPNPRVGCVLSKNGQIIGQGFTQPAGQDHAEIQALKDAQTRGIDPAGATAYVTLEPCSH 83

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHA 140
           +GR+PPCA  ++  GI RVV  ++DP+  VSGRGLQ L   GI V   ++E E +     
Sbjct: 84  FGRTPPCADALVRAGIARVVAAMEDPNPSVSGRGLQRLRDAGIDVRCGLLEKEARDLNIG 143

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +++R       + +K+A S D    +    S  ITG  +++  H  RA++ AIL GIGTV
Sbjct: 144 FVSRMTRGLPWVRVKVAASMDGGTALHDGTSQWITGQAARDDGHAWRARACAILTGIGTV 203

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT---ALLAPVIIVTENDDPVLA 257
             D+P++T R        P R+++D   ++ LD++I+      L  PV++ +  DD    
Sbjct: 204 RDDNPQMTVRAIPTPRQ-PQRVLVDSRLEVPLDARILTPDSGDLAKPVLVFSAVDDRERR 262

Query: 258 LAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
            A   +   ++         +L+K+L  L  RG+  L VE G  +  S I     D +++
Sbjct: 263 HALEARGAEVVVLPNPHGKVELRKMLEELGRRGINELHVEAGFKLNGSLIREHCADELLI 322

Query: 314 YRSQIVIGE 322
           Y +  ++G+
Sbjct: 323 YLAPKLLGD 331


>gi|223041905|ref|ZP_03612090.1| riboflavin biosynthesis protein [Actinobacillus minor 202]
 gi|223017259|gb|EEF15686.1| riboflavin biosynthesis protein [Actinobacillus minor 202]
          Length = 364

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/367 (32%), Positives = 196/367 (53%), Gaps = 22/367 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++ FD  +M+ A+  +    G T+ NP V C+IVK+  ++  G     G  HAE  A+  
Sbjct: 1   MTDFD--YMARAIALAEKARGWTNPNPLVGCVIVKNDEILAEGYHERIGGWHAERNAILN 58

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           +  + RGATAYVTLEPC H+GR+PPC+  +IE GI +V +   DP+  VSG+G++ L   
Sbjct: 59  SSADLRGATAYVTLEPCCHHGRTPPCSDLLIERGISKVFIGSRDPNPLVSGKGVKQLQDA 118

Query: 123 GI-IVDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           GI +V   M  E      IF H   T    KR ++ LK A++ D  I  +   S  ITG 
Sbjct: 119 GIEVVTDFMREECDRLNPIFFHYIQT----KRPYVLLKYAMTADGKIATSTGESKWITGE 174

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
           +++ +V   R Q  AI+VG+ TVLAD+P L  R+   ++  P+RI+ D   +  LD +++
Sbjct: 175 LARAKVQETRHQYSAIMVGVETVLADNPMLNSRMPNAKQ--PVRIVCDSSLRTPLDCQLV 232

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVE 293
           +TA     II T +DD      F+   ++++ C  +    DL+ LL  L    + SLL+E
Sbjct: 233 QTAKEYRTIIATVSDDLQKIAQFQPLGVDVLVCKAKDKRVDLQDLLQKLGEMQIDSLLLE 292

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE---GYLEK--NFMCVRRDYFGS 348
           GG+++  S + + +V+ +  Y +  ++G     +P+     G L +         +  G 
Sbjct: 293 GGSSLNFSALQAGVVNRVHCYIAPKLVGGETAKTPIGGEGIGVLSQAVKLQLQSTELIGE 352

Query: 349 DVCLEYI 355
           D+ L+Y+
Sbjct: 353 DILLDYV 359


>gi|330815804|ref|YP_004359509.1| Pyrimidine reductase, riboflavin biosynthesis [Burkholderia
           gladioli BSR3]
 gi|327368197|gb|AEA59553.1| Pyrimidine reductase, riboflavin biosynthesis [Burkholderia
           gladioli BSR3]
          Length = 372

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/331 (36%), Positives = 179/331 (54%), Gaps = 17/331 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  S   +  TS NP V C+IVKD +VIG G T   G  HAEVQA+++A
Sbjct: 3   SESDFAHMQRALDLSSRGMYTTSPNPRVGCVIVKDEVVIGEGYTQPAGQDHAEVQAMKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G + RGAT YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+  VSG+GL  L 
Sbjct: 63  RSRGHDLRGATVYVTLEPCSHFGRTPPCALGLIDARVAKVVAAMEDPNPLVSGKGLGMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++  E +     +++R    +  + +K A+S D    +    S  ITG  +
Sbjct: 123 DAGIEVRCGLLAQEAREMNIGFVSRMTRGQPWVRMKSAISLDGRTALPDGQSQWITGEAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238
           +   H  RA++ AIL GIGTV  DDP+LT R  G+     P+R+++D   ++SL++K++ 
Sbjct: 183 RADGHAWRARACAILTGIGTVREDDPQLTVR--GIDTPRQPLRVLVDSRLEVSLEAKLLS 240

Query: 239 TALLAPVIIVTENDDPV---LALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291
               AP++I     D      A A R +   ++         DL  LL  L  RG+  L 
Sbjct: 241 G---APILIFCGELDAAGEGRAAALRDRGAEVVPLAGPNGKVDLPALLQALGKRGINELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
           VE G  +  S +    VD +++Y +  ++G+
Sbjct: 298 VEAGHKLNGSLLREGCVDELLIYVAPTLLGD 328


>gi|154706505|ref|YP_001424060.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Coxiella
           burnetii Dugway 5J108-111]
 gi|154355791|gb|ABS77253.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Coxiella
           burnetii Dugway 5J108-111]
          Length = 354

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/332 (33%), Positives = 174/332 (52%), Gaps = 10/332 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  SS D  ++  AL  +    G  + NPSV  ++VKD  +I  G     G PHAEV+A+
Sbjct: 1   MNDSSLD--YLKKALSLAEIRRGFCAPNPSVGAVVVKDDKIISTGFHKRSGLPHAEVEAI 58

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           +   ++ARGA  YVTLEPC H+G++PPC   II+ GI+ V   + DP++ V G+G++ L 
Sbjct: 59  KSLDDKARGAALYVTLEPCCHFGKTPPCTDLIIQSGIKAVYYGLHDPNLAVCGKGIEQLQ 118

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           + G+    +   E   F  +Y      KR  +T K+A+S D  I       V +TG   +
Sbjct: 119 RAGVNCFLIELPEINAFYESYRYWIKHKRPWVTAKLALSLDGKIAGNEGKPVRLTGEGLR 178

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              H  R +SDA+L  I T+L DDP+L  RL G +   P+  ILD H +L L++ I +TA
Sbjct: 179 QYTHERRKKSDALLTTINTILTDDPKLNVRLQGEEIKKPI-YILDTHLRLPLNALIHQTA 237

Query: 241 LLAPVIIVTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295
               +I+   N+ D        +KNI  I    R    DL ++L ++   G+  L +E G
Sbjct: 238 --ESIIVFHGNEADKKQQQRLMQKNIRCIEIARRSEGLDLNEVLDVIGNDGIHDLWIEAG 295

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
                SF+   L++  ++Y +  ++G   +P+
Sbjct: 296 GTCFQSFLKENLINRALIYIAPKILGSTAMPA 327


>gi|317470714|ref|ZP_07930099.1| riboflavin biosynthesis protein RibD [Anaerostipes sp. 3_2_56FAA]
 gi|316901849|gb|EFV23778.1| riboflavin biosynthesis protein RibD [Anaerostipes sp. 3_2_56FAA]
          Length = 359

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 130/367 (35%), Positives = 196/367 (53%), Gaps = 35/367 (9%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALEEAGEEA 67
           ++M  A+  ++   G T+ NP V  +IVKDG VIG G   AYGG  HAE  AL+   ++ 
Sbjct: 4   QYMRRAIELAKKGTGYTNPNPLVGAVIVKDGEVIGEGFHEAYGGL-HAERNALKSCTKDP 62

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI--- 124
            GA  YVTLEPC HYGR+PPC + +I+ GIR+V V   DP+ +V+G G++ L + GI   
Sbjct: 63  NGAELYVTLEPCCHYGRTPPCTEAVIKSGIRKVYVGNVDPNPKVAGMGIKILREHGIEAE 122

Query: 125 --IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
             I+D        IF + Y+T       ++ LK A++ D  I +    S  ITG  ++  
Sbjct: 123 TGILDEECRGLNDIFFY-YITHDT---PYVVLKYAMTLDGKIAVRTGESKWITGGEAREH 178

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           V  LR +  AIL GI TV++DDP L  R+ G   ++P+R+I D   ++ + SKI+++A +
Sbjct: 179 VQFLRHRYAAILTGIHTVISDDPMLNARIEG--GNNPVRVICDSRLRIPISSKIVQSAKV 236

Query: 243 APVIIV----TENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEG 294
            P II      E    + AL  R     ++ C  +D K    +L+ IL    + S+LVEG
Sbjct: 237 IPTIIAACERNEKAQRLEALGCR-----VLICPGKDGKTDLLELMRILRKEKIDSVLVEG 291

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-------NFMCVRRDYFG 347
           GA +  S I +  V+ +  + +  + G     SP+E   ++K       N   + R  FG
Sbjct: 292 GADINDSVIQAGAVNKVYAFIAPKIFGGRQARSPVEGEGVDKISDALLLNGPEITR--FG 349

Query: 348 SDVCLEY 354
            D+ LEY
Sbjct: 350 EDLLLEY 356


>gi|312113516|ref|YP_004011112.1| riboflavin biosynthesis protein RibD [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218645|gb|ADP70013.1| riboflavin biosynthesis protein RibD [Rhodomicrobium vannielii ATCC
           17100]
          Length = 398

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/324 (36%), Positives = 181/324 (55%), Gaps = 13/324 (4%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGAT 71
           AL  ++ ++G TS NPSV  ++   + G +I    TA GG PHAEV AL EAG+ A+GA 
Sbjct: 37  ALFVAQTNIGATSPNPSVGAVVADARTGEIIASAATARGGRPHAEVLALREAGDRAKGAL 96

Query: 72  AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
              TLEPCSH+G +PPCA  I+  GI  ++    DPD RV GRGL +++Q G+   R   
Sbjct: 97  IITTLEPCSHFGATPPCAHSIVNAGISHLIYGSLDPDTRVGGRGLTYVAQHGVRATRGTP 156

Query: 132 SEGK--IFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +  +   +LH  +  R  E+R  + +K+AV     + +     V ITG +++   HLLRA
Sbjct: 157 AFVRDCDWLHLGHSLRVTERRPFVQVKLAVDAAGFVPLGNGKPVFITGDVARAAAHLLRA 216

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           ++DAILVG  TV ADDPELTCRL GL + SP+R++L     +   +K+       P + +
Sbjct: 217 RADAILVGRKTVEADDPELTCRLPGLADRSPVRVVLASRCNVPPAAKLFANER--PPVWI 274

Query: 249 TENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
              D    A  F +  + ++          +L+  +  +   G+T LLVEGG + A  FI
Sbjct: 275 VCGDSTEGAAFFGRPGVRVLDIGASLTGRLNLRLAMMRVAAEGITRLLVEGGPSTARGFI 334

Query: 304 NSRLVDSIILYR-SQIVIGEGGIP 326
           ++ L D +I+ + +Q +  + G+P
Sbjct: 335 DAGLADEVIIMQGTQTLDPQAGMP 358


>gi|297567806|ref|YP_003686777.1| hypothetical protein Mesil_3462 [Meiothermus silvanus DSM 9946]
 gi|296852255|gb|ADH65269.1| hypothetical protein Mesil_3462 [Meiothermus silvanus DSM 9946]
          Length = 383

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 203/374 (54%), Gaps = 35/374 (9%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  AL  +   +G TS NP V C++V+   V+GRG     G PHAEV AL +AGE 
Sbjct: 6   DVAFMRQALELAAQGIGRTSPNPPVGCVLVRGAEVVGRGFHPRAGEPHAEVLALRQAGER 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAY+TLEPC+HYGR+PPCAQ +IE G+ RVVV   DP+ +VSGRGL+ L++ G+ V
Sbjct: 66  AQGATAYITLEPCAHYGRTPPCAQALIEAGVARVVVATTDPNPQVSGRGLEQLARAGVAV 125

Query: 127 DRMM-----ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
              +     E + ++F H    R+      +  K A+S D         +  ++G  ++ 
Sbjct: 126 TTGLLRDEAERQQEVFRHWIAHRE----PFVVFKTALSLDGKTATVAGDARWVSGEAARE 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI---IK 238
           +V LLR + DA++VG+GTVL DDP LTCRL   +   P R+  DP  K+  D+      +
Sbjct: 182 RVQLLRDELDAVVVGVGTVLTDDPWLTCRLR--EPAVPHRVPRDP-VKVVFDTHARTPPR 238

Query: 239 TALLAP---------VIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVG 284
             L AP         ++++ E  DP      R+    ++  +        L+  L  L  
Sbjct: 239 ARLFAPGPRGEAARVLLLIAEGADPARVEELRQAGAEVVRLEAGPDGRPRLEAALQALEA 298

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFM 339
           RG+T LL+EGG+ +A SF ++  V  ++ + +  ++G  G P+PL    +      ++  
Sbjct: 299 RGLTGLLLEGGSVLAGSFFDAGKVHKVVAFVAPKLVGGRG-PTPLAGNGVARMSQARHLE 357

Query: 340 CVRRDYFGSDVCLE 353
            VR +  G+DV +E
Sbjct: 358 RVRVEPLGTDVLVE 371


>gi|255320997|ref|ZP_05362170.1| riboflavin biosynthesis protein RibD [Acinetobacter radioresistens
           SK82]
 gi|262379913|ref|ZP_06073068.1| riboflavin biosynthesis protein RibD [Acinetobacter radioresistens
           SH164]
 gi|255301961|gb|EET81205.1| riboflavin biosynthesis protein RibD [Acinetobacter radioresistens
           SK82]
 gi|262298107|gb|EEY86021.1| riboflavin biosynthesis protein RibD [Acinetobacter radioresistens
           SH164]
          Length = 362

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/324 (35%), Positives = 180/324 (55%), Gaps = 19/324 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  +R     T  NP+V C+IVKDG +IG G     G PHAEV AL +AGE+
Sbjct: 8   DYFYMRRAIELARLGQYSTKPNPNVGCVIVKDGQIIGEGYHPRAGQPHAEVFALRQAGEQ 67

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+ ATAYVTLEPC+HYGR+PPCA+ +++  +++VV+   DP+  V+G+G+  L Q GI V
Sbjct: 68  AQDATAYVTLEPCAHYGRTPPCAEALVKHQLKKVVIACPDPNPLVAGKGIAILKQAGIEV 127

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  + E+E       +L        ++ LK+A S D    MA   S  ITG  ++  V  
Sbjct: 128 ESGICENEAAQLNCGFLKAMAVGMPYVRLKVASSLDGRTAMASGESKWITGKAARQDVQH 187

Query: 186 LRAQSDAILVGIGTVLADDPELTCR-LNGLQEHS---PMRIILDPHFKLSLDSKIIKTAL 241
            RA S  ++ GI TVL DD +L  R L+G    +   P R++LD   +L L ++I+ +  
Sbjct: 188 WRAISGVVITGIQTVLTDDCQLNVRCLSGTDLQTVVQPKRLVLDRQGQLPLTARILASP- 246

Query: 242 LAPVIIVTENDDPVLALAFRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAV 298
                     +  ++   FR++  ++ +I    + LK LL  L  +  +  +LVE GA +
Sbjct: 247 ----------EQLMVMGPFRQELADLGVIQLPLQPLKGLLQTLCNQYQIFDVLVEAGATL 296

Query: 299 AHSFINSRLVDSIILYRSQIVIGE 322
           + +F+  +LVD +I Y +   +G+
Sbjct: 297 SSAFLQEKLVDEMISYVAPTFLGQ 320


>gi|284045160|ref|YP_003395500.1| riboflavin biosynthesis protein RibD [Conexibacter woesei DSM
           14684]
 gi|283949381|gb|ADB52125.1| riboflavin biosynthesis protein RibD [Conexibacter woesei DSM
           14684]
          Length = 374

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/338 (33%), Positives = 175/338 (51%), Gaps = 10/338 (2%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P +  D   ++ AL  +    G  S NP V  +I +DG V+  G  +  G PHAEV+A+ 
Sbjct: 4   PTTDTDRLHLARALELAAQGRGRVSPNPMVGAVITRDGEVVAEGWHSEYGAPHAEVEAIA 63

Query: 62  EAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            AG+ +  GAT YV+LEPC H G+ PPC   I+  GIRRVVV  DDP  + SGRGL  L 
Sbjct: 64  AAGDADLSGATLYVSLEPCCHTGKQPPCTDAILAAGIRRVVVASDDPTEKASGRGLGILR 123

Query: 121 QKGI---IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
            +G+   +    + +  ++    +  +    R  +  K A++ D  +      S  I+  
Sbjct: 124 DEGVDVAVAGGELAARARLLNQPFRKQARTGRPWVLFKSAMTLDGKVATRAGDSKWISST 183

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            S+ + H  RA+ DA+ VGIGT LADDP+LT R+ G+    P R++ D   ++ LDS+++
Sbjct: 184 QSRERAHHWRAECDAVAVGIGTALADDPQLTARIPGVARQ-PRRVVFDSLARVPLDSQLV 242

Query: 238 KTALLAPVIIVTENDDPVLAL-AFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLV 292
           + A   P+ +V     P  A  A       +I     +    +   L  L   GV S+L+
Sbjct: 243 QAAADIPLTVVVSRAAPRTATDALETHGAEVIVATGANEPARVVSALDQLGAVGVASILL 302

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           EGG  +A +F+++  +D + L+ + IV+G      PLE
Sbjct: 303 EGGPRLAGAFLDAGEIDELRLFLAPIVLGGRTARDPLE 340


>gi|295096804|emb|CBK85894.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 367

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 122/328 (37%), Positives = 178/328 (54%), Gaps = 16/328 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A++ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEMYMARAMKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPC + +I  G+ RVV  + DP+ +V GRGL  L Q+GI V
Sbjct: 63  ARGATAYVTLEPCSHHGRTPPCCEALIAAGVSRVVAAMQDPNPQVVGRGLYRLQQEGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M  + +     +L R       I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMQDAENINKGFLKRMRTGFPFIQLKLGASLDGRTAMANGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP +T R   L         QE+   P+RII+D   +++ + 
Sbjct: 183 LRAQSHAILTSSETVLADDPAMTVRWEELNADTQALYPQENLRQPLRIIVDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVE 293
           +I++       I  T+ D        R  +I +   +      +L +L+G+  V S+ VE
Sbjct: 243 RIVQQPGET-WIARTKEDTREWPEGVR--SIMVPEHNGHLDLVVLMMLLGKQQVNSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG 321
            G  +A + + + LVD  ++Y +  ++G
Sbjct: 300 AGPMLAGALLQAGLVDEFLVYVAPKLLG 327


>gi|320181604|gb|EFW56519.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-5-phosphoribosylaminouracil
           reductase [Shigella boydii ATCC 9905]
          Length = 367

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 131/370 (35%), Positives = 192/370 (51%), Gaps = 26/370 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LR+QS AIL    TVLADDP LT R + L E +           P+RI++D   +++   
Sbjct: 183 LRSQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPGH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++           E+     + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG--GIPS--PLEEGYLEKNFMCVRRDYF 346
            VE G  +A + + + LVD +I+Y +  ++G    G+ +   LE+      F      + 
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLLGLEKLADAPQFKFKEIRHV 356

Query: 347 GSDVCLEYIG 356
           G DVCL  +G
Sbjct: 357 GPDVCLHLVG 366


>gi|291562115|emb|CBL40931.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [butyrate-producing bacterium SS3/4]
          Length = 369

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 122/341 (35%), Positives = 184/341 (53%), Gaps = 25/341 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++  +G TS NP V  +IVKDG +IG G     G  HAE  A+    E 
Sbjct: 3   DRDYMLRAIELAKGGLGWTSPNPLVGAVIVKDGRIIGEGYHERCGELHAERNAIASLTES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GAT YVTLEPC HYG++PPC + I+E  I RVV+   DP+  V+G+G   L   G+ V
Sbjct: 63  AEGATLYVTLEPCCHYGKTPPCTEAILEQKIARVVIGSRDPNPLVAGKGAAILRAAGVRV 122

Query: 127 DR-MMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           +   M  E      +F H Y+T+   K  ++ +K A++ D  I      S  ITG  ++ 
Sbjct: 123 EEDFMREECDALNPVFFH-YITK---KTPYVVMKYAMTADGKIAARTGDSKWITGESARK 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +V  LR Q   I+ GIGTVLADDP L  R+ GL+  SP+RII D   ++ +DS+I+KTA 
Sbjct: 179 KVQELRHQYMGIMAGIGTVLADDPMLNVRIPGLK--SPVRIICDSGLRIPMDSQIVKTAK 236

Query: 242 LAPVIIV------------TENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVT 288
               I+              E  +  L  A   + +++   D R DL+KL+  L  +G+ 
Sbjct: 237 EYRTIVAYAGEHSGEGCKEAEEKEEQLHTAG-VETVSVPDADGRVDLRKLMEYLGKQGID 295

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
           S+L+EGG  +  + +++ +V+ I  + +  + G  G  +P+
Sbjct: 296 SVLLEGGGTLNDAALSAGIVNEICAFIAPKIFGGAGAKTPV 336


>gi|259909281|ref|YP_002649637.1| Riboflavin biosynthesis protein RibD [Erwinia pyrifoliae Ep1/96]
 gi|224964903|emb|CAX56426.1| Riboflavin biosynthesis protein RibD [Erwinia pyrifoliae Ep1/96]
 gi|283479336|emb|CAY75252.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Erwinia pyrifoliae DSM 12163]
          Length = 367

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/330 (36%), Positives = 179/330 (54%), Gaps = 14/330 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL  +R     T+ NP+V C++V+DG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEIYMARALELARRGRFTTTPNPNVGCVLVRDGQIVGEGYHMLAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           + GATAYVTLEPCSH+GR+PPC + +I  GI+RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  SLGATAYVTLEPCSHHGRTPPCCEALIAAGIKRVVTAMQDPNPQVAGRGLYRLQQAGIEV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M  E +     +L R       + LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMQEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPEARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLAD+P LT R + L   S           P+R+I+D   +++ + 
Sbjct: 183 LRAQSSAILSTSATVLADNPALTVRHDELDSASLADYPVDLLRQPVRVIVDGQNRVTPEY 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           +++  A      +   + D         + I  +Y +  DL  LL +L  + + S+ VE 
Sbjct: 243 RLV--AQPGETWLARTSGDRQQWPENVSQLIVPLYQNRLDLVSLLMLLGKKQINSVWVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           GA  A + + + +VD +I+Y +  ++G+ G
Sbjct: 301 GAQFAGALLQAGVVDELIVYLAPKLLGDAG 330


>gi|46446676|ref|YP_008041.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Candidatus Protochlamydia amoebophila UWE25]
 gi|46400317|emb|CAF23766.1| probable diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 368

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/340 (35%), Positives = 176/340 (51%), Gaps = 21/340 (6%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTST-NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           M  S     FM  A+  S W   L +  NP V C+IVKD  +IG+G T   G  HAE+ A
Sbjct: 1   MKNSEIHHTFMLEAIAES-WKARLHAPPNPWVGCVIVKDQKIIGKGYTYPSGQAHAEINA 59

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           L+ A E A+GA+ YVTLEPCSH+G++PPC + II  GI  V V + DPD RV G+G+Q L
Sbjct: 60  LKSASENAKGASLYVTLEPCSHHGKTPPCTEAIIRAGILNVYVALKDPDSRVRGQGIQKL 119

Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            + GI V   + E E K+ L  YL ++  +  +  LKIA S D         S  +T   
Sbjct: 120 REAGIHVKVGIGEKEAKVVLTPYLYQRESQIPYTVLKIATSVDGRTAAVDGTSQWLTSSE 179

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILD-----PHFKLSL 232
           ++   HL RA S A+++G GT   D P+LT R   +     P RI++D     P   L  
Sbjct: 180 ARLDAHLQRAYSQAVVIGSGTATIDSPQLTVRHPTIHLFQQPQRILIDSSGKTPATGLLF 239

Query: 233 DSKIIKTALLAPVIIVTENDDPVLAL-AFRKKNINIIYCDCR-----DLKKLLTILVGRG 286
           D K      LAP +++T     +     + K    +I          +L++   +L  RG
Sbjct: 240 DQK------LAPTLVLTTKASSITRQNEWLKTGAEVIVISATKNGHVNLREAWQLLAKRG 293

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           +  +LVEGG+ +  + +   LV+ + +Y   ++IG+ G+P
Sbjct: 294 IIQVLVEGGSTLQSALLEIGLVNCLSVYTGPLLIGKSGLP 333


>gi|310779807|ref|YP_003968139.1| riboflavin biosynthesis protein RibD [Ilyobacter polytropus DSM
           2926]
 gi|309749130|gb|ADO83791.1| riboflavin biosynthesis protein RibD [Ilyobacter polytropus DSM
           2926]
          Length = 359

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/360 (31%), Positives = 189/360 (52%), Gaps = 17/360 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M  AL+ +    G  + NP V  ++VK+G ++G G     G PHAEV AL EAG E
Sbjct: 2   DKKYMETALKLALKGEGNVNPNPMVGAVVVKNGTIVGEGYHKQYGGPHAEVYALNEAGSE 61

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            RGAT YVTLEPCSHYG++PPCA+ IIE GI++ V+   DP+  V+GRG++ L + GI V
Sbjct: 62  CRGATIYVTLEPCSHYGKTPPCAEKIIEMGIKKCVIACLDPNPLVAGRGVKILERAGIEV 121

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  +ME E       ++     ++  + LK A++ D  I      S  IT  +S+ +V  
Sbjct: 122 EVGLMEKEALELNRVFMKYITTEKPFVFLKCAITLDGKIAARTGSSKWITNEVSREKVQR 181

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR +   I+VG  T++ D+P L  R+ G   + P RI++DP   +  DS          +
Sbjct: 182 LRHRFMGIMVGANTLVMDNPRLNARIEG--GNDPFRIVIDPELIVPSDSNFASMKDGKSI 239

Query: 246 IIVTEND---DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           I+ +E +   + V  L  R      +  D   +  +L  +    + S+L+EGG+ +    
Sbjct: 240 IVTSEKNKDSEKVSLLEARGVRFAWLPGDEFKISDILKKVGELKIDSVLLEGGSYLISKA 299

Query: 303 INSRLVDSIILYRSQIVIG-EGGIP-------SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
                +D   ++ +  ++G + GIP         +EE +  KN   V+ + +G+++ +E+
Sbjct: 300 FEENAIDGGEIFIAPKILGDQKGIPFIKGFSFDSIEEAFELKN---VKFNQYGNNISVEF 356


>gi|194432577|ref|ZP_03064863.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 1012]
 gi|194419138|gb|EDX35221.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 1012]
 gi|332086036|gb|EGI91200.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 155-74]
          Length = 367

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 130/371 (35%), Positives = 190/371 (51%), Gaps = 28/371 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
           LR+QS AIL    TVLADDP L  R + L E +           P+RI++D   +++   
Sbjct: 183 LRSQSHAILTSSATVLADDPALIVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPGH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++           E+     + V  L   +   ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355

Query: 346 FGSDVCLEYIG 356
            G DVCL  +G
Sbjct: 356 VGPDVCLHLVG 366


>gi|300721779|ref|YP_003711057.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Xenorhabdus nematophila ATCC 19061]
 gi|297628274|emb|CBJ88835.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Xenorhabdus nematophila ATCC 19061]
          Length = 369

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/333 (36%), Positives = 174/333 (52%), Gaps = 22/333 (6%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D  +MS AL  +      TS NP+V C+IVKD  ++G G     G PHAEV AL  AG
Sbjct: 3   TLDEIYMSRALELAYQGRFTTSPNPNVGCVIVKDEEIVGEGFHLRAGEPHAEVHALRMAG 62

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E+A+GATAYVTLEPCSH+G++PPCA  +I  G+ RVVV + DP+ +V+GRGL  L Q GI
Sbjct: 63  EKAKGATAYVTLEPCSHHGKTPPCADALIAAGLSRVVVAMQDPNPQVAGRGLYKLQQAGI 122

Query: 125 IVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V+  +M  + +     +L R      ++ LK+  S D    ++   S  IT   ++  V
Sbjct: 123 AVEHGLMMDQAESLNKGFLKRMRTGFPYLQLKLGSSLDGRTALSSGESQWITSPQARQDV 182

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSL 232
             LRAQ  AIL    TVLADDP +T R N L   +           P+RII D   +++ 
Sbjct: 183 QTLRAQCSAILSSSATVLADDPSMTVRWNELDAETQSVYPEERLRQPIRIITDSQNRVTP 242

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVT 288
             ++I+      +    +N+           N+  I         DL  L+  L  R + 
Sbjct: 243 QHQVIQQTGQCWLAYTNKNEQ------HWPDNVKQILLPAHGGGVDLVLLMMQLGKRQIN 296

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           S+  E G A+A + ++  LVD +ILY +  V+G
Sbjct: 297 SVWAECGPALAGALLSLGLVDELILYIAPKVLG 329


>gi|83951487|ref|ZP_00960219.1| riboflavin biosynthesis protein RibD [Roseovarius nubinhibens ISM]
 gi|83836493|gb|EAP75790.1| riboflavin biosynthesis protein RibD [Roseovarius nubinhibens ISM]
          Length = 364

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 136/332 (40%), Positives = 192/332 (57%), Gaps = 9/332 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S  D   M  ALR  R  +G    NP+V C+IV    ++GRG TA GG PHAE QAL E
Sbjct: 1   MSEQDIHHMREALRLGRSAMGSAWPNPAVGCVIVAGDQIVGRGATAPGGRPHAEPQALAE 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  ARGATAYVTLEPC+H+G++PPCA+ +I+ G+ RVVV V D D RVSGRG++ L + 
Sbjct: 61  AGAAARGATAYVTLEPCAHHGKTPPCAEVLIKAGVARVVVAVGDSDPRVSGRGIEMLRKA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +V  ++E E +  L  +  R  E R  +TLK+A S D  I  A   S  ITG  ++ 
Sbjct: 121 GIEVVQGVLEDEARTDLAGFFLRIEEGRPWVTLKLASSFDGRIATASGHSQWITGPEARQ 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDP-HFKLSLDSKIIKTA 240
           +VH  RA+ DA++VG GT  AD+P LT R  GL        ++      + L S++ +TA
Sbjct: 181 RVHEFRARHDAVMVGAGTARADNPMLTVR--GLDVPRQPVRVVVSRRLDVPLMSELARTA 238

Query: 241 LLAPVIIVTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295
              PV +    D D  L  A++     ++ C       ++  +L  L  RG+T +  EGG
Sbjct: 239 GEVPVWMCHGPDADKSLREAWQGLGAELVECRLHGRQLEIGSVLQALGERGLTRVFCEGG 298

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
            A+A S +++ LVD +I + + +VIG  G+P 
Sbjct: 299 GALAASLLSAGLVDELIGFTAGVVIGAEGLPG 330


>gi|262373927|ref|ZP_06067204.1| riboflavin biosynthesis protein RibD [Acinetobacter junii SH205]
 gi|262310938|gb|EEY92025.1| riboflavin biosynthesis protein RibD [Acinetobacter junii SH205]
          Length = 366

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/331 (37%), Positives = 186/331 (56%), Gaps = 21/331 (6%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           S +  +M  A+  +R     T  NP+V C+IVKDG +IG G     G PHAEV AL +AG
Sbjct: 10  SENQYWMQQAIDLARRGQYSTKPNPNVGCVIVKDGKIIGEGFHPKAGQPHAEVFALRQAG 69

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E A+ ATAYVTLEPC+H+GR+PPCA+ +++  +++VVV   DP+  V+G+G++ L   GI
Sbjct: 70  ENAKDATAYVTLEPCAHFGRTPPCAEALVKAQVKKVVVACSDPNPLVAGKGVKILQDAGI 129

Query: 125 IVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V+  + + E K     +L        ++ LKIA S D    MA   S  ITG  ++  V
Sbjct: 130 EVETGICDEEAKTLNFGFLKAMSTGLPYVRLKIASSLDGRTAMASGESKWITGTAARQDV 189

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHS---PMRIILDPHFKLSLDSKIIKT 239
              RA S A++ GI TVLADD EL  R L+G+   S   P RIILD   +L L +KI+  
Sbjct: 190 QHWRAISAAVITGIQTVLADDCELNVRSLDGVDLSSVVQPKRIILDRQGQLPLSAKIL-- 247

Query: 240 ALLAPVIIVTENDDPVLALA-FRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGG 295
                     +N + V+ +  FR++  ++ +I    + L +LL  L  +  +  +LVE G
Sbjct: 248 ----------QNPETVMVMTPFRQELADLGVIQLAPQPLNQLLQTLTQQYQIYDVLVEAG 297

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           A ++ +F+   LVD +I Y +  ++G+   P
Sbjct: 298 ATLSTAFLEQGLVDEMISYVAPTLLGQSARP 328


>gi|17545434|ref|NP_518836.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Ralstonia solanacearum GMI1000]
 gi|17427726|emb|CAD14245.1| probable riboflavin biosynthesis bifunctional ribd :
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           oxidoreductase protein [Ralstonia solanacearum GMI1000]
          Length = 370

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/329 (36%), Positives = 172/329 (52%), Gaps = 10/329 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S FD   M  AL  +   +  T+ NP V C++V+D  VIG G T   G  HAE+QA+++A
Sbjct: 3   SDFDHAMMQRALALAENGLFTTTPNPRVGCVLVRDDTVIGEGFTQPAGQDHAEIQAIKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G + RGATAYVTLEPCSH+GR+PPCA  ++E GI RVV  ++DP+  VSGRGLQ L 
Sbjct: 63  QARGHDVRGATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPTVSGRGLQRLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI V   ++E E +     +++R       + +K+  S D    +    S  IT   +
Sbjct: 123 EAGIDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGISQWITEAEA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H  RA++ AIL GIGTV  D+P LT R        P RI++D    + LD+ I+  
Sbjct: 183 RADGHRWRARACAILTGIGTVREDNPRLTVRAIPTPRQ-PRRILIDSGLDVPLDAHILTA 241

Query: 240 -ALLAPVIIVTENDDPVLALAFRKKNINIIY---CDCR-DLKKLLTILVGRGVTSLLVEG 294
                P +I     +     A  +    +I     D + DL  +L  L  R +  L VE 
Sbjct: 242 DGHHEPTLIFAARPEAGRMRALAEHGAEVILLPNADGKVDLPAMLRELGRREINELHVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           G  +  S +   LVD I++Y +  V+G G
Sbjct: 302 GYKLNGSLLREGLVDEILVYLAPKVLGSG 330


>gi|308174118|ref|YP_003920823.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Bacillus amyloliquefaciens DSM 7]
 gi|307606982|emb|CBI43353.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Bacillus amyloliquefaciens DSM 7]
 gi|328552752|gb|AEB23244.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Bacillus amyloliquefaciens TA208]
 gi|328912449|gb|AEB64045.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Bacillus amyloliquefaciens LL3]
          Length = 371

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/329 (35%), Positives = 173/329 (52%), Gaps = 20/329 (6%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M+ A+  +R   G T  NP V  ++VK+G ++G G     G  HAEV A+  AG  A+G
Sbjct: 5   YMNTAIELARRGEGQTQPNPLVGAVVVKNGQIVGMGAHLQYGEAHAEVHAINMAGSHAKG 64

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI----- 124
           A  YVTLEPCSHYG++PPCA+ I++ GI+RV + V+DP+  V+G+G+  L   GI     
Sbjct: 65  ADLYVTLEPCSHYGKTPPCAELIMKSGIKRVFIAVEDPNPLVAGKGITMLEAAGIEVKTG 124

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           ++ +  E   K+FLH   T       ++TLK A S D         S  IT   ++    
Sbjct: 125 LLRQQAEELNKMFLHFMRT----GLPYVTLKAAASLDGKTATETGDSKWITSEAARLDAQ 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             R    +ILVG GTV AD+P LTCRL    +  P+R+ILD    +   + ++ T   AP
Sbjct: 181 QYRKSHQSILVGAGTVKADNPSLTCRLPDAVKQ-PVRVILDTKLTVPETANVL-TDGAAP 238

Query: 245 VIIVT------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
             I T         D + AL  +   +  +  D   + ++L+IL   G+ S+ VEGGA+V
Sbjct: 239 TWIFTAAGSDVRKKDRLTALGIK---VFTLETDRIHIPEVLSILAENGIMSVYVEGGASV 295

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS 327
             SF+ +   D +  Y +  +IG    PS
Sbjct: 296 HGSFVKAGCFDELHFYFAPTLIGGTLAPS 324


>gi|149179738|ref|ZP_01858243.1| riboflavin biosynthesis protein RibD [Bacillus sp. SG-1]
 gi|148851930|gb|EDL66075.1| riboflavin biosynthesis protein RibD [Bacillus sp. SG-1]
          Length = 363

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 111/320 (34%), Positives = 176/320 (55%), Gaps = 8/320 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           +  +M  AL  ++   G T+ NP+V  ++VKDG ++G G     G PHAEV A+ +AG +
Sbjct: 3   EQEYMKLALSLAKAGKGQTAPNPAVGAVVVKDGEIVGMGAHLKAGDPHAEVHAIRQAGSK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GA  YVTLEPC+H G++PPCA  I+E  ++RV +   DP+  V+G+G+  L + GI +
Sbjct: 63  AEGADIYVTLEPCAHTGKTPPCANLIVENKLKRVFIASVDPNPLVAGKGIDILERAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRS-HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V  + E E  + L+A+    ++ ++ ++TLK AV+ D         S  IT   S+  VH
Sbjct: 123 VTGICEKEA-LELNAHFFHFIQTKTPYVTLKSAVTLDGKTAAYTGDSKWITSEESRLDVH 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
             R   DAILVG+ TV+ D+P LT RL  G +  +P+R++LD H ++ L+S I+      
Sbjct: 182 KYRHHHDAILVGVNTVINDNPLLTTRLPRGGK--NPIRVVLDSHLRIPLESDILNIEHAK 239

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLVEGGAAVAHS 301
            +I                K + +   +   L  K +L  L    VTSL VEGG+A+  S
Sbjct: 240 TIIFCGSEASEEKKGMLLNKGVRVEQLESPKLPVKMVLQRLGELNVTSLFVEGGSAIHFS 299

Query: 302 FINSRLVDSIILYRSQIVIG 321
           F+  +    +++Y +  ++G
Sbjct: 300 FLKEKAYQEVVIYMAPKLVG 319


>gi|22536910|ref|NP_687761.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
           2603V/R]
 gi|76788660|ref|YP_329494.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
           A909]
 gi|77406006|ref|ZP_00783084.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
           H36B]
 gi|22533761|gb|AAM99633.1|AE014225_16 riboflavin biosynthesis protein RibD [Streptococcus agalactiae
           2603V/R]
 gi|76563717|gb|ABA46301.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
           A909]
 gi|77175401|gb|EAO78192.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
           H36B]
          Length = 369

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 111/317 (35%), Positives = 180/317 (56%), Gaps = 7/317 (2%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M+ AL+ +   +G  + NP V  +IVKD  +I +G     G  HAE QA++ A E+  G
Sbjct: 7   YMALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDISG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           +T YVTLEPC H G+ PPC + +I+ GI++VVV   DP+  VSG+G+  L ++G+ V+  
Sbjct: 67  STLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVEVG 126

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++  E       ++     K+  + LK A++ D  I      S  I+   S+  V  LR 
Sbjct: 127 ILREECDALNERFIFHMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKLRQ 186

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           +  AI+VGI TVLAD+P LTCR+   +  + +RI+ D   K+ LDS ++K+A   P  I 
Sbjct: 187 KCSAIMVGINTVLADNPRLTCRIP--KGEALVRIVCDSQLKIPLDSYLVKSAKTIPTWIA 244

Query: 249 TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           T +D+       ++    +I    +    DLK L+TIL   G+ SLL+EGG+++  S + 
Sbjct: 245 TCSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQEGIDSLLIEGGSSLHFSALK 304

Query: 305 SRLVDSIILYRSQIVIG 321
           + +V+ +I++ +  +IG
Sbjct: 305 AGIVNRLIVFIAPKIIG 321


>gi|172038173|ref|YP_001804674.1| riboflavin biosynthesis protein [Cyanothece sp. ATCC 51142]
 gi|171699627|gb|ACB52608.1| riboflavin biosynthesis protein [Cyanothece sp. ATCC 51142]
          Length = 364

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/338 (34%), Positives = 181/338 (53%), Gaps = 5/338 (1%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M   + D + M   L  +R  +G TS NP V  +IVK+G +IG G     G PHAEV AL
Sbjct: 2   MTPDNVDQQMMQRCLTLARRGLGYTSPNPLVGAVIVKEGKIIGEGFHLKAGEPHAEVFAL 61

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAGE+A G T YV LEPC+HYGR+PPC + +I   + RVVV + DP+  VSG+G+  L 
Sbjct: 62  REAGEKAVGGTVYVNLEPCNHYGRTPPCTEALISAKVARVVVGMVDPNPLVSGKGIARLQ 121

Query: 121 QKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI V   +E    + L+ A+  R +  +    LK A++ D  I  +   S  +TG  S
Sbjct: 122 EAGIEVTVGVEEAACLRLNEAFCHRILHNQPFGILKYAMTLDGKISSSTGHSAWVTGTKS 181

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  VH +RA  DA++VG  TV  D+P LT  ++     +P+R+++  +  L  D+ +   
Sbjct: 182 RQLVHEMRAGCDAVIVGGNTVRRDNPHLT--IHQATGRNPLRVVMSRNLHLPQDANLWNV 239

Query: 240 ALLAPVIIVTE-NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
             +AP I+ TE   +P L    R+K + +I        +++ +L  R ++S+L E G  +
Sbjct: 240 E-IAPTIVFTEWGKNPSLQTQLRRKGVEVIELSPLIPSQVMDVLCERQLSSILWECGGVL 298

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
           A   I    +  I+ + +  +IG     SP+    LEK
Sbjct: 299 AAEAIAQGGIQKIMAFIAPKIIGGFSAASPVGNLGLEK 336


>gi|221201163|ref|ZP_03574203.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans
           CGD2M]
 gi|221206384|ref|ZP_03579397.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans
           CGD2]
 gi|221213661|ref|ZP_03586635.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans
           CGD1]
 gi|221166450|gb|EED98922.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans
           CGD1]
 gi|221173693|gb|EEE06127.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans
           CGD2]
 gi|221179013|gb|EEE11420.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans
           CGD2M]
          Length = 373

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 119/327 (36%), Positives = 173/327 (52%), Gaps = 11/327 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +   +  T+ NP V C+IVK G VIG G T   G  HAEVQAL++A
Sbjct: 3   SDIDFAHMQRALALAARGMYTTTPNPRVGCVIVKHGEVIGEGHTQPPGQDHAEVQALKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G +  G+T YVTLEPCSH+GR+PPCA  +IE  + +VV  ++DP+  VSGRGL  L 
Sbjct: 63  RARGHDVAGSTVYVTLEPCSHFGRTPPCANALIEARVAKVVAAMEDPNPLVSGRGLGMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++  E       +++R    R  + +K A S D    +    S  ITG  +
Sbjct: 123 DAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKAAASLDGRTALPSGESQWITGEAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238
           +   H  RA++ AIL GIGTV  DDP+LT R  G+     P R+++D   +L LD+++++
Sbjct: 183 RADGHAWRARACAILTGIGTVREDDPQLTVR--GIDTPRQPQRVLVDSRLELPLDARLLE 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294
            A L       + D    A A + +   I+         DL  +L+ L  RG+  L VE 
Sbjct: 241 GAPLLIFCGRLDADGEARASALKARGAEIVSLANAHGKVDLGAMLSALGARGINELHVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321
           G  +  S +  R VD +++Y +  ++G
Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLG 327


>gi|226329108|ref|ZP_03804626.1| hypothetical protein PROPEN_03011 [Proteus penneri ATCC 35198]
 gi|225202294|gb|EEG84648.1| hypothetical protein PROPEN_03011 [Proteus penneri ATCC 35198]
          Length = 384

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 125/372 (33%), Positives = 188/372 (50%), Gaps = 32/372 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  +      TS NP+V C+IVK+G ++G G   + G PHAEV AL+ AG++
Sbjct: 17  DEHYMRRAIELAALGRFTTSPNPNVGCVIVKEGEIVGEGYHHHAGGPHAEVNALKMAGDK 76

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+G++PPCA  +I  G++RVV  + DP+ +V+GRGL  L   GI V
Sbjct: 77  AKGATAYVTLEPCSHFGKTPPCADALINAGVKRVVAAMQDPNPQVAGRGLHKLLSAGIDV 136

Query: 127 DR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
               +M+   K+ +  +  R      +I LK+  S D    +A   S  IT   S+  V 
Sbjct: 137 SHGILMQEAEKLNV-GFFKRMRTGFPYIQLKLGASLDGKTALASGESQWITSKASRRDVQ 195

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLSLD 233
             RAQ+ AIL    TVLAD+P +  R + L +             P+RI+ D   +++ +
Sbjct: 196 NFRAQASAILTTSATVLADNPSMNVRWDELSDEIKALYPEETLRQPIRIVADSQNRVTEN 255

Query: 234 SKIIKTA---LLAPVIIVT---ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
            KI +      LA   +     + +   + L    KN  +      DL  L+  L  R +
Sbjct: 256 HKITQIEGECWLARTKLQPSDWQGNVSEILLPTNGKNSGV------DLVLLMMQLGKRNI 309

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRR 343
            ++ VE GA  A + + + LVD +I+Y +  ++G+        SPL        F     
Sbjct: 310 NTVWVESGAHFAGALLEAGLVDELIIYIAPKILGDDARGLFALSPLSSLSEAPEFTVDSL 369

Query: 344 DYFGSD--VCLE 353
              GSD  VCL+
Sbjct: 370 QQIGSDIRVCLK 381


>gi|323527043|ref|YP_004229196.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1001]
 gi|323384045|gb|ADX56136.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1001]
          Length = 385

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 124/358 (34%), Positives = 186/358 (51%), Gaps = 23/358 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  ++  +  T  NP V C+IV++G VIG G T   G  HAE++A+++A
Sbjct: 3   SQTDFVHMERALALAKRGMYTTDPNPRVGCVIVQNGEVIGEGFTQPAGQDHAEIRAMKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G + RGAT YVTLEPCSH+GR+PPCA  +IE  + RVV  ++DP+ +VSGRGL  L 
Sbjct: 63  RSRGHDLRGATVYVTLEPCSHFGRTPPCANALIEAQVARVVAAMEDPNPQVSGRGLAMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++ +E +     +++R    R  + +K+A S D   G+    S  ITG  +
Sbjct: 123 DAGIEVRCGLLANEAQELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGVSQWITGEAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H  RA++ AIL GIGTV  DDP +T R        P R+++D   ++S  ++I+  
Sbjct: 183 RADGHAWRARASAILTGIGTVREDDPRMTVRAVDTPRQ-PQRVLIDSQLEVSPQAQILAG 241

Query: 240 ALLAPVIIVTENDDPVLA---LAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLV 292
              AP +I   N D   +    A R +   I+         DL  +L +L  R V  L V
Sbjct: 242 ---APTLIFCGNLDERHSERVQALRNRGAEIVEMANAAGKVDLPGMLKVLGERQVNELHV 298

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI-------PSPLEEGYLEKNFMCVRR 343
           E G  +  S +    VD +++Y +  ++G   +       P+ L EG ++  F  V R
Sbjct: 299 EAGYKLNGSLLREGCVDELLVYLAPSLLGNDSMSMFNLSAPATL-EGRVKLAFHNVER 355


>gi|221231089|ref|YP_002510241.1| riboflavin biosynthesis protein [Streptococcus pneumoniae ATCC
           700669]
 gi|220673549|emb|CAR68035.1| riboflavin biosynthesis protein [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           and 5-amino-6-(5-phosphoribosylamino)uracil reductase]
           [Streptococcus pneumoniae ATCC 700669]
          Length = 366

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 110/320 (34%), Positives = 174/320 (54%), Gaps = 7/320 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G PHAE  AL+   E 
Sbjct: 3   DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + V
Sbjct: 63  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A+S D  I      S  IT   ++  VH 
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--ERKNPIRIICDTHLRTPLTSKIVKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIG 321
            +  ++VD + +Y +  + G
Sbjct: 301 ALEQQIVDELKIYIAPKIFG 320


>gi|167580933|ref|ZP_02373807.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
           TXDOH]
          Length = 378

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 117/327 (35%), Positives = 173/327 (52%), Gaps = 11/327 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +   +  T+ NP V C+IVKD +VIG G T   G  HAEVQAL++A
Sbjct: 3   SENDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G + R AT YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L 
Sbjct: 63  RARGNDLRDATVYVTLEPCSHFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++  E       +++R    R  + +K A S D    +A   S  ITG  +
Sbjct: 123 DAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238
           ++  H  RA++ AIL GIGTV  DDP+L  R  G+     P R+++D    + L +++++
Sbjct: 183 RDDGHKWRARACAILTGIGTVREDDPQLNVR--GVDTPRQPRRVLIDSRLDIPLTARLLE 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINII-YCDCR---DLKKLLTILVGRGVTSLLVEG 294
              L       +      A A R +   I+   + R   DL  +L  L  RG+  L VE 
Sbjct: 241 GGSLLIFCGALDAQSEARAQALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321
           G  +  S +  R VD +++Y +  ++G
Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLG 327


>gi|254480859|ref|ZP_05094105.1| riboflavin biosynthesis protein RibD [marine gamma proteobacterium
           HTCC2148]
 gi|214038654|gb|EEB79315.1| riboflavin biosynthesis protein RibD [marine gamma proteobacterium
           HTCC2148]
          Length = 371

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 121/345 (35%), Positives = 179/345 (51%), Gaps = 31/345 (8%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            +  + R M+ AL+ +R        NP V C++ +DG VIG G T   G  HAEVQAL E
Sbjct: 2   ATELNTRMMARALQLARRGQYSCMPNPHVGCVLERDGAVIGEGFTQPAGGNHAEVQALAE 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ A GATAYVTLEPCSH G++ PCA  +I  G+ RV   ++DP+  V+G GL  L   
Sbjct: 62  AGD-ASGATAYVTLEPCSHIGKTGPCADALITAGVSRVFAAIEDPNPLVAGNGLDKLRAA 120

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V+  ++E++ +  +  +++R    R  +  K+A+S D    MA   S  ITG  ++ 
Sbjct: 121 GIEVEVGLLEADARKVIPGFISRMTGGRGRVRAKLAMSLDGRTAMASGESQWITGPAARA 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRA S A++ GIGTVL+DD  LT R   L            + P+R++LD + +  
Sbjct: 181 DVQRLRAMSCAVITGIGTVLSDDCSLTVRAAELGLPVAEAELASLNQPLRVVLDSNLQTP 240

Query: 232 LDSKIIKTA----------LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
             + I+  A          L A   IV    D  LAL   +  +N        L +L+  
Sbjct: 241 ASAAILDGAAPTLICHDEKLDASTAIVASGVD-RLALGGDENGLN--------LAQLIDY 291

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           L  R    +LVE G  +A +F+   L+D +I+Y + +++G    P
Sbjct: 292 LSARQSNEILVECGPRLAGAFVREGLLDELIVYMAPVLMGSAARP 336


>gi|291533443|emb|CBL06556.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Megamonas hypermegale ART12/1]
          Length = 360

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 114/332 (34%), Positives = 186/332 (56%), Gaps = 22/332 (6%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A++ +   +G TS NP V  +IVKD  V+G G     G PHAEV AL +AGE A+GA
Sbjct: 1   MRLAMQLAGNAIGRTSPNPLVGAVIVKDNRVVGCGWHREAGTPHAEVHALNQAGELAQGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
             YVTLEPC+HYG++PPC++ ++E  ++ V   + D + +V+G+G + L   GI V+   
Sbjct: 61  DVYVTLEPCAHYGKTPPCSKALVEAKVKNVYGGLLDVNPKVAGKGFKILEDAGIHVEYG- 119

Query: 131 ESEGKIFLHAYLTRQVE--------KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
                 FL   L +Q E        K+  I LK A++ D  I  A   S  IT   S+  
Sbjct: 120 ------FLQDELRKQNEVFFKWIEHKKPFIVLKAAMTLDGKIATATGQSKWITNETSRAY 173

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            + LR   D I+VGI TV+ D+P LT R++G +  +P+RI++D   K+ +++ + +    
Sbjct: 174 GYKLRDIYDGIMVGINTVIEDNPMLTARVDGGK--NPIRIVVDSSLKIDINANVAQDKSA 231

Query: 243 APVIIVTE--NDDPVLALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGAA 297
             ++  T+  + D +L L  +  ++ ++     D  D++KLL IL  + + S+LVEGGA 
Sbjct: 232 KTIVATTDKADKDKILKLQAQDVDVIVVDKDENDKVDIEKLLDILGQQNICSILVEGGAT 291

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
           ++ SF+  +LVD +  + +  ++G     +P+
Sbjct: 292 LSGSFVAKKLVDKVYFFIAPKIVGGKEAKTPV 323


>gi|331001110|ref|ZP_08324741.1| riboflavin biosynthesis protein RibD [Parasutterella
           excrementihominis YIT 11859]
 gi|329569415|gb|EGG51193.1| riboflavin biosynthesis protein RibD [Parasutterella
           excrementihominis YIT 11859]
          Length = 355

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 168/304 (55%), Gaps = 12/304 (3%)

Query: 28  NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGR 84
           NP+V C+IVKD  +IG G T   G  HAEV AL +A   GE   GAT YVTLEPCSHYGR
Sbjct: 18  NPAVGCVIVKDRRIIGEGFTQKTGEAHAEVMALRDAASRGESVAGATVYVTLEPCSHYGR 77

Query: 85  SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES-EGKIFLHAYLT 143
           +PPCA  +    + RVV  + DP+  V+G+GL+ L + G+ V+  +E+ E +     +L 
Sbjct: 78  TPPCALALKNAKVARVVAALKDPNPLVAGKGLKMLEEAGVKVECGLEAEEAEEINRGFLK 137

Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203
           RQ E    +  K+A+S D    +A   S  IT   ++   H  R  S A+L G+GTVLAD
Sbjct: 138 RQREGMPWVRTKMAMSVDGNTALANGKSQWITSEEARADGHFWRGISGAVLTGLGTVLAD 197

Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
           +P++T R  G+    P+++++D +  L+ D KI +       ++V  + D V A  F  +
Sbjct: 198 NPQMTARFEGVTRQ-PLKVVVDSNLSLNPDLKIFQG---GKTLLVCAHYDIVRAENFESQ 253

Query: 264 NINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
            + +I    +    DL+ L+  L  R +  + VE GA +  +     L+D  ++Y + + 
Sbjct: 254 GVEVIELPGKDGKVDLRALMRELAKREINDVHVEAGARLNGALAMEGLIDEYLIYVAPVF 313

Query: 320 IGEG 323
           +G+G
Sbjct: 314 LGDG 317


>gi|320157206|ref|YP_004189585.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio vulnificus MO6-24/O]
 gi|319932518|gb|ADV87382.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Vibrio vulnificus MO6-24/O]
          Length = 368

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/334 (34%), Positives = 182/334 (54%), Gaps = 24/334 (7%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D + M  A+  ++  +  T+ NP+V C++++DG ++G G     G PHAEV A+  A
Sbjct: 5   TAIDRQMMLRAIALAKRGLYTTAPNPNVGCVLLRDGEIVGEGFHFRAGEPHAEVHAMRMA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G++A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RVV  ++DP+ +V+GRG   L + G
Sbjct: 65  GDKAKGATAYVTLEPCSHYGRTPPCAEGLIKAGVSRVVCAMEDPNPQVAGRGFAMLREAG 124

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++++E +    A++ R       + LK+A S D    +A   S  IT   ++  
Sbjct: 125 IEVSVGLLQTEAEALNPAFIKRMKTGMPFVQLKMAASLDGQTALANGKSQWITSPQARRD 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLS 231
           V   RAQS AIL    TVLAD+  L  R + L           Q   P R++LD   +LS
Sbjct: 185 VQRFRAQSGAILSTSKTVLADNASLNVRWSELPSSVQLALPQEQLRQPTRVVLDRQAELS 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSL 290
            + K+ +T     +I+  + D P    A   ++  I      DL +L   L   + +  L
Sbjct: 245 PELKLYQTE-GERLIVGPKGDLP----APLDEHGQI------DLPQLFAQLSQTQSINHL 293

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            +E GA +A   I  +LVD +I+Y +  ++G  G
Sbjct: 294 WIEAGATLAAKLIKHQLVDELIVYLAPKLMGSDG 327


>gi|149187995|ref|ZP_01866290.1| pyrimidine reductase [Vibrio shilonii AK1]
 gi|148837983|gb|EDL54925.1| pyrimidine reductase [Vibrio shilonii AK1]
          Length = 369

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/334 (34%), Positives = 173/334 (51%), Gaps = 23/334 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D + MS AL  ++     T+ NP+V C+I  +  V+G G     G PHAEV AL  A
Sbjct: 5   SAIDYQMMSRALELAKRGRFTTAPNPNVGCVITLNNEVVGEGYHKKAGEPHAEVHALRMA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            E A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+GRG   L + G
Sbjct: 65  AERAKGATAYVTLEPCSHYGRTPPCAEGLIKAGVSKVICAMSDPNPQVAGRGFNMLREAG 124

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++E + +     +L +       + LK+A S D    +A   S  ITG  ++  
Sbjct: 125 IEVSVGLLEQDARALNPGFLKKMETGMPFVQLKMAASLDGQTALANGISQWITGPEARRD 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231
           V   RAQS AIL    TV+ D+  L  R + L  H            P R+ILD    LS
Sbjct: 185 VQAYRAQSGAILSTSQTVVEDNASLNVRWDELPSHVTDVIKPDELRQPTRVILDRQNALS 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSL 290
            + K+ +          +E D   +A A    N+ +   +  DL + L  L   + +  +
Sbjct: 245 RELKLFQ----------SEGDIIRVAQAGGDLNVTMNSANQLDLAETLQGLAKDQQINHV 294

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            +E GA +A S I  +LVD +I+Y +  ++G  G
Sbjct: 295 WIEAGATLAGSMIQQQLVDELIVYLAPKLMGADG 328


>gi|77410804|ref|ZP_00787162.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
           CJB111]
 gi|77163183|gb|EAO74136.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
           CJB111]
          Length = 369

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 111/317 (35%), Positives = 180/317 (56%), Gaps = 7/317 (2%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M+ AL+ +   +G  + NP V  +IVKD  +I +G     G  HAE QA++ A E+  G
Sbjct: 7   YMALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDISG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           +T YVTLEPC H G+ PPC + +I+ GI++VVV   DP+  VSG+G+  L ++G+ V+  
Sbjct: 67  STLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVEVG 126

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++  E       ++     K+  + LK A++ D  I      S  I+   S+  V  LR 
Sbjct: 127 ILREECDALNERFIFYMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKLRQ 186

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           +  AI+VGI TVLAD+P LTCR+   +  + +RI+ D   K+ LDS ++K+A   P  I 
Sbjct: 187 KCSAIMVGINTVLADNPRLTCRIP--KGEALVRIVCDSQLKIPLDSYLVKSAKTIPTWIA 244

Query: 249 TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           T +D+       ++    +I    +    DLK L+TIL   G+ SLL+EGG+++  S + 
Sbjct: 245 TCSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQEGIDSLLIEGGSSLHFSALK 304

Query: 305 SRLVDSIILYRSQIVIG 321
           + +V+ +I++ +  +IG
Sbjct: 305 AGIVNRLIVFIAPKIIG 321


>gi|284037818|ref|YP_003387748.1| riboflavin biosynthesis protein RibD [Spirosoma linguale DSM 74]
 gi|283817111|gb|ADB38949.1| riboflavin biosynthesis protein RibD [Spirosoma linguale DSM 74]
          Length = 352

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 125/361 (34%), Positives = 182/361 (50%), Gaps = 27/361 (7%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQA- 59
           S D RFM  AL  +    G  S NP V C+I         +IG G     G  HAEV A 
Sbjct: 7   SVDERFMRRALELATLGRGHVSPNPMVGCVITHGSGSQERIIGEGWHKRYGDWHAEVNAV 66

Query: 60  ---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
              L E  +    AT YVTLEPCSH+G++PPCA  +IE  ++RVV C DDP+  VSG+G 
Sbjct: 67  NSVLPEHQQLLSEATVYVTLEPCSHWGKTPPCADLLIERHVKRVVCCNDDPNPLVSGQGF 126

Query: 117 QWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
             L   GI V+  ++  +G++    + T   +KR +I LK A + D  I  AG   V I+
Sbjct: 127 AKLRAAGIQVETGVLAEQGRLLNARFFTFFEQKRPYILLKWAETADGFIAGAGGQPVKIS 186

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
           G ++   VH  R + DAILVG  T   D+P L  RL   +   P R++LD +  L+ D  
Sbjct: 187 GDLAHRLVHRWRGEEDAILVGANTARLDNPRLNTRL--WEGKDPTRVVLDRNLTLTTDLH 244

Query: 236 IIKTALLAPVIIVTENDD-PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           +   +    V   ++ D  P L         N+ Y     L ++++ L  R V S+LVEG
Sbjct: 245 LFDGSQPTLVYHASQTDALPDLP--------NVQYVVAESLYQVMSDLYQRKVQSVLVEG 296

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           GA V ++F+ + L D + ++RS+ ++G  G+ +P   G +        R+  G D    Y
Sbjct: 297 GAVVLNAFMEAGLWDEMRVFRSRTMLGN-GVKAPTVRGIIHS------REKVGDDELTSY 349

Query: 355 I 355
           +
Sbjct: 350 M 350


>gi|161525607|ref|YP_001580619.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans ATCC
           17616]
 gi|189349664|ref|YP_001945292.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Burkholderia
           multivorans ATCC 17616]
 gi|160343036|gb|ABX16122.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans ATCC
           17616]
 gi|189333686|dbj|BAG42756.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Burkholderia
           multivorans ATCC 17616]
          Length = 373

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 119/327 (36%), Positives = 173/327 (52%), Gaps = 11/327 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +   +  T+ NP V C+IVK G VIG G T   G  HAEVQAL++A
Sbjct: 3   SDIDFAHMQRALALAARGMYTTTPNPRVGCVIVKHGEVIGEGHTQPPGQDHAEVQALKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G +  G+T YVTLEPCSH+GR+PPCA  +IE  + +VV  ++DP+  VSGRGL  L 
Sbjct: 63  RARGHDVAGSTVYVTLEPCSHFGRTPPCANALIEARVAKVVAAMEDPNPLVSGRGLGMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++  E       +++R    R  + +K A S D    +    S  ITG  +
Sbjct: 123 DAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKAAASLDGRTALPSGESQWITGEAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238
           +   H  RA++ AIL GIGTV  DDP+LT R  G+     P R+++D   +L LD+++++
Sbjct: 183 RADGHAWRARACAILTGIGTVREDDPQLTVR--GVDTPRQPQRVLVDSRLELPLDARLLE 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294
            A L       + D    A A + +   I+         DL  +L+ L  RG+  L VE 
Sbjct: 241 GAPLLIFCGRLDADGEARASALKARGAEIVSLANAHGKVDLGAMLSALGARGINELHVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321
           G  +  S +  R VD +++Y +  ++G
Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLG 327


>gi|15805190|ref|NP_293877.1| riboflavin-specific deaminase [Deinococcus radiodurans R1]
 gi|6457821|gb|AAF09742.1|AE001878_1 riboflavin-specific deaminase [Deinococcus radiodurans R1]
          Length = 357

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 123/354 (34%), Positives = 189/354 (53%), Gaps = 18/354 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIV----IGRGVTAYGGCPHAEVQALEE 62
           DA +M  AL  +   +G TS NP V C+IV+DG +    +GRG     G PHAEV AL E
Sbjct: 8   DAEYMQLALNEAAKGLGRTSPNPPVGCVIVRDGEIASEIVGRGFHPKAGEPHAEVFALRE 67

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH GR+PPCA  +I  G+ RVVV   DP+ +V+GRGL+ L   
Sbjct: 68  AGERARGATAYVTLEPCSHDGRTPPCADALIAAGVARVVVAAGDPNPQVNGRGLEKLRAA 127

Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V   +     +   A     V + R H+  K A++ D  +     G+ P++G  ++ 
Sbjct: 128 GIEVATGVLEAAAVRQQAGFRSLVTRGRPHVIYKYAMTLDGKVAALNEGNGPVSGPEARA 187

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
           +V   R + DA+ VG  T L D+P+L  R L+G ++  P  ++ DP   L   ++ ++  
Sbjct: 188 RVMAWRNEVDAVAVGARTALLDNPQLNVRGLDGGRD--PRAVLFDPEGHLPASARAVREG 245

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
               V+++ E     L     +++  +       L+  L  L G GV +LL+EGG  +A 
Sbjct: 246 T---VLVLREGRSTPL-----ERDPRVTVLHAHSLQGALEQLAGLGVATLLLEGGPTLAS 297

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEKNFMCVRRDYFGSDVCL 352
           +F  + L+D + ++ +  ++G G  P  +P+   +        R +  G+DV +
Sbjct: 298 AFFEAGLIDELRVFVAPKLLGAGLSPLLAPVRSMHAATELAVERVEVVGNDVLV 351


>gi|225858039|ref|YP_002739549.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           70585]
 gi|225721875|gb|ACO17729.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           70585]
          Length = 366

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 113/326 (34%), Positives = 176/326 (53%), Gaps = 8/326 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G PHAE  AL+   E 
Sbjct: 3   DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + V
Sbjct: 63  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A+S D  I      S  IT   ++  VH 
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300

Query: 302 FINSRLVDSIILY-RSQIVIGEGGIP 326
            +  ++VD + +Y  S+I  G    P
Sbjct: 301 ALEQQIVDELKIYIASKIFGGSAKFP 326


>gi|167746303|ref|ZP_02418430.1| hypothetical protein ANACAC_01012 [Anaerostipes caccae DSM 14662]
 gi|167654296|gb|EDR98425.1| hypothetical protein ANACAC_01012 [Anaerostipes caccae DSM 14662]
          Length = 354

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 130/365 (35%), Positives = 194/365 (53%), Gaps = 35/365 (9%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALEEAGEEARG 69
           M  A+  ++   G T+ NP V  +IVKDG VIG G   AYGG  HAE  AL+   E+ +G
Sbjct: 1   MRRAIELAQKGTGHTNPNPLVGAVIVKDGQVIGEGFHEAYGGL-HAERNALKSCTEDPKG 59

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI----- 124
           A  YVTLEPC HYG++PPC + +I+ GIR+V V   DP+ +V+G G++ L + GI     
Sbjct: 60  AELYVTLEPCCHYGKTPPCTEAVIKSGIRKVYVGNVDPNPKVAGMGIKILREHGIKVETG 119

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           I+D        IF + Y+T       ++ LK A++ D  I +    S  ITG  ++  V 
Sbjct: 120 ILDEECRELNDIFFY-YITHDT---PYVALKYAMTLDGKIAVKTGESKWITGGEAREHVQ 175

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR +  AIL GI TV+ DDP L  R+ G   ++P+R+I D   ++ + SKI+++A + P
Sbjct: 176 FLRHRYAAILTGIHTVIGDDPMLNARIEG--GNNPVRVICDSRLRIPISSKIVQSAKVIP 233

Query: 245 VIIV----TENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGA 296
            II      E    + AL  R     ++ C  +D K    +L+ IL    + S+LVEGGA
Sbjct: 234 TIIAACERNEKAQRLEALGCR-----VLICPGKDGKTDLLELMRILRKEKIDSVLVEGGA 288

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-------NFMCVRRDYFGSD 349
            +  S I +  V+ +  + +  + G     SP+E   ++K       N   + R  FG D
Sbjct: 289 DINDSVIQAGAVNKVYAFIAPKIFGGRQARSPVEGEGVDKISDALLLNGPEITR--FGED 346

Query: 350 VCLEY 354
           + LEY
Sbjct: 347 LLLEY 351


>gi|320656030|gb|EFX23946.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320665156|gb|EFX32249.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli O157:H7 str. LSU-61]
          Length = 361

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 132/367 (35%), Positives = 189/367 (51%), Gaps = 28/367 (7%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+A+GA
Sbjct: 1   MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
           TAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V   +
Sbjct: 61  TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  LRAQ
Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDSKIIK 238
           S AIL    TVLADDP LT R + L         Q H   P+RI++D   +++ +  I++
Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDVQTQALYPQHHLRQPVRIVIDSQNRVTPEHHIVQ 240

Query: 239 TALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
                      E+     + V  L   +   ++      DL  L+  L  + + S+ VE 
Sbjct: 241 QPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSIWVEA 294

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349
           G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      + G D
Sbjct: 295 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRHVGPD 353

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 354 VCLHLVG 360


>gi|15900115|ref|NP_344719.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           TIGR4]
 gi|14971645|gb|AAK74359.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           TIGR4]
          Length = 366

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 111/320 (34%), Positives = 174/320 (54%), Gaps = 7/320 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G PHAE  AL+   E 
Sbjct: 3   DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + V
Sbjct: 63  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A+S D  I      S  IT   ++  VH 
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIG 321
            +  ++VD + +Y +  V G
Sbjct: 301 ALEQQIVDELKIYIAPKVFG 320


>gi|284107199|ref|ZP_06386340.1| riboflavin biosynthesis protein RibD [Candidatus Poribacteria sp.
           WGA-A3]
 gi|283829946|gb|EFC34225.1| riboflavin biosynthesis protein RibD [Candidatus Poribacteria sp.
           WGA-A3]
          Length = 362

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 115/316 (36%), Positives = 170/316 (53%), Gaps = 18/316 (5%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYG-RSPPCA 89
           V  +IV DG V+G G     G PHAE+ AL +A   +RGAT Y TLEPC H   R+PPC 
Sbjct: 2   VGAVIVADGAVVGAGYHRRAGGPHAEIVALRQARTRSRGATLYTTLEPCCHTNKRTPPCV 61

Query: 90  QFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEK 148
             I+  G+RR+V+ + DP+V+V+GRG++ L + G+ VD   +  E       YL     K
Sbjct: 62  PAILASGVRRIVLAMRDPNVQVAGRGIRQLRRAGLSVDVGCLGKEAAQLNEVYLHWMKTK 121

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R  + LK A++ D  I  A   S  ITG  ++  VH LR+Q D I VG+ TVL DDP+LT
Sbjct: 122 RPFVVLKAAMTLDGKIATASGESQWITGAKARAHVHQLRSQVDVIAVGVETVLKDDPQLT 181

Query: 209 CRLNGLQEHS-----PMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN-DDPVLALAFRK 262
            RL+G Q  +     P+R+I+D   +    +++++    AP +I T     P      RK
Sbjct: 182 VRLSGGQRSATGVRQPVRLIVDSRLRTPYKARVLQGIEQAPTVIATTKLAGPRKVERLRK 241

Query: 263 KNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS-- 316
             + ++    +     L K L  L   G+ S+L+EGG+ +  +F+ + LV+ + LY +  
Sbjct: 242 MGVQVLVLPRKGNRVSLDKCLQALGNMGIVSMLLEGGSELNAAFLRAGLVNRVALYVAPS 301

Query: 317 ----QIVIGEGGIPSP 328
               Q+  G  G PSP
Sbjct: 302 LLGGQLTKGLLGGPSP 317


>gi|261876153|ref|YP_695000.2| riboflavin biosynthesis protein RibD [Clostridium perfringens ATCC
           13124]
 gi|255529887|gb|ABG83871.2| riboflavin biosynthesis protein RibD [Clostridium perfringens ATCC
           13124]
          Length = 371

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 117/339 (34%), Positives = 181/339 (53%), Gaps = 16/339 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
            + D  FM  AL  +R   G  + NP V  +IVK G +IG+G   + G  HAE+ A+  +
Sbjct: 5   DNLDEFFMKKALELARKGEGYVNPNPLVGAVIVKGGEIIGQGYHEFFGGNHAEINAINSS 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            +   GAT YVTLEPC HYG++PPC + II+   +RVVV   D +  VSG+ ++ L + G
Sbjct: 65  IKSTEGATIYVTLEPCCHYGKTPPCIEAIIKNKFKRVVVGTLDQNPLVSGKSIKILRESG 124

Query: 124 IIVD-RMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
           I V   ++E E     +IF + Y+    E R  I LK A++ D  I      S  IT   
Sbjct: 125 IEVKVGVLEKECIRLNEIF-NFYIK---ENRPFIALKWAMTLDGKIATKEFKSKWITNRK 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKI 236
           S+  VH LR +  +I+VGI TVL D+P+L CRLN  +  E    RI+LD   ++ LDS+I
Sbjct: 181 SREFVHSLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEI 240

Query: 237 IKTALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291
           +K    +  +I T N  D +     +   I +I  +      ++ ++L  L  + + S+L
Sbjct: 241 LKNQNESKTLIFTTNKKDKIKNEKLKDIGIEVIEVNLDEGKININQVLECLKEKNIDSVL 300

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           +EGG  +  +F+ ++ V+ I  + +  V G     +P+E
Sbjct: 301 IEGGGNLNFTFLENKKVNKIYAFVAPKVFGGKNAITPVE 339


>gi|83718892|ref|YP_442086.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
           E264]
 gi|83652717|gb|ABC36780.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
           E264]
          Length = 378

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 117/327 (35%), Positives = 173/327 (52%), Gaps = 11/327 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +   +  T+ NP V C+IVKD +VIG G T   G  HAEVQAL++A
Sbjct: 3   SENDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G + R AT YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L 
Sbjct: 63  RARGNDLRDATVYVTLEPCSHFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++  E       +++R    R  + +K A S D    +A   S  ITG  +
Sbjct: 123 DAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238
           ++  H  RA++ AIL GIGTV  DDP+L  R  G+     P R+++D    + L +++++
Sbjct: 183 RDDGHKWRARACAILTGIGTVREDDPQLNVR--GVDTPRQPRRVLIDSRLDIPLTARLLE 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINII-YCDCR---DLKKLLTILVGRGVTSLLVEG 294
              L       +      A A R +   I+   + R   DL  +L  L  RG+  L VE 
Sbjct: 241 GGSLLIFCGALDAQSEARAQALRARGAEIVPLANVRGKVDLPAMLAALGERGINELHVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321
           G  +  S +  R VD +++Y +  ++G
Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLG 327


>gi|148987916|ref|ZP_01819379.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
           SP6-BS73]
 gi|147926380|gb|EDK77453.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
           SP6-BS73]
          Length = 366

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 110/320 (34%), Positives = 174/320 (54%), Gaps = 7/320 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G PHAE  AL+   E 
Sbjct: 3   DSKYMKLAIKLAQKGAGYVNPNPMVGAIIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + V
Sbjct: 63  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A+S D  I      S  IT   ++  VH 
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIG 321
            +  ++VD + +Y +  + G
Sbjct: 301 ALEQQIVDELKIYIAPKIFG 320


>gi|77413098|ref|ZP_00789299.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae 515]
 gi|77160891|gb|EAO72001.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae 515]
          Length = 369

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 111/317 (35%), Positives = 180/317 (56%), Gaps = 7/317 (2%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M+ AL+ +   +G  + NP V  +IVKD  +I +G     G  HAE QA++ A E+  G
Sbjct: 7   YMALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDISG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           +T YVTLEPC H G+ PPC + +I+ GI++VVV   DP+  VSG+G+  L ++G+ V+  
Sbjct: 67  STLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVEVG 126

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++  E       ++     K+  + LK A++ D  I      S  I+   S+  V  LR 
Sbjct: 127 ILREECDALNERFIFHMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKLRQ 186

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           +  AI+VGI TVLAD+P LTCR+   +  + +RI+ D   K+ LDS ++K+A   P  I 
Sbjct: 187 KCSAIMVGINTVLADNPRLTCRIP--KGEALVRIVCDSQLKIPLDSYLVKSAKTIPTWIA 244

Query: 249 TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           T +D+       ++    +I    +    DLK L+TIL   G+ SLL+EGG+++  S + 
Sbjct: 245 TCSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQDGIDSLLIEGGSSLHFSALK 304

Query: 305 SRLVDSIILYRSQIVIG 321
           + +V+ +I++ +  +IG
Sbjct: 305 AGIVNRLIVFIAPKIIG 321


>gi|194290427|ref|YP_002006334.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (n-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Cupriavidus taiwanensis LMG 19424]
 gi|193224262|emb|CAQ70271.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Cupriavidus taiwanensis LMG 19424]
          Length = 371

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 107/309 (34%), Positives = 169/309 (54%), Gaps = 12/309 (3%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSH 81
           T+ NP V C+++KDG VIG+G T   G  HAE+QA+++A   G +  GATAYVTLEPCSH
Sbjct: 24  TTPNPRVGCVLIKDGQVIGQGFTQPAGQDHAEIQAMKDALSRGLDPAGATAYVTLEPCSH 83

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHA 140
           +GR+PPCA  ++  G+ RVV  ++DP+  VSGRGLQ L   GI V   ++E E +     
Sbjct: 84  FGRTPPCADALVRAGVARVVAAMEDPNPSVSGRGLQRLRDAGIDVRCGLLEKEARDLNIG 143

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +++R       + +K+A S D    +    S  ITG  +++  H  RA++ AIL GIGTV
Sbjct: 144 FVSRMTRGLPWVRVKVAASMDGGTALHDGTSQWITGQAARDDGHAWRARACAILTGIGTV 203

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT---ALLAPVIIVTENDDPVLA 257
             D+P LT R        P R+++D   ++ LD++I+         PV++    +D    
Sbjct: 204 RDDNPALTVRAFATPRQ-PQRVLVDSRLEVPLDARILTPDSGEFARPVLVFCAVEDRQRQ 262

Query: 258 LAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
            A   +   ++         +L+++L  L  RG+  L VE G  +  S +     D +++
Sbjct: 263 RALEARGAEVVVLPNPHGKVELRRMLEELGRRGINELHVEAGFKLNGSLVREHCADELLI 322

Query: 314 YRSQIVIGE 322
           Y +  ++G+
Sbjct: 323 YLAPKLLGD 331


>gi|71066695|ref|YP_265422.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Psychrobacter arcticus 273-4]
 gi|71039680|gb|AAZ19988.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Psychrobacter arcticus 273-4]
          Length = 351

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 128/357 (35%), Positives = 191/357 (53%), Gaps = 33/357 (9%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  A+  ++  +  T  NP+V C+IV+   V+G+G     G PHAEV AL++AG  
Sbjct: 12  DRYFMMLAIEQAKLGLYSTRPNPAVGCVIVQAEEVVGQGFHPKVGQPHAEVFALKDAGIR 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GATAYVTLEPCSH GR+PPCA+ +IE G+ RVVV   DP+ +V+GRG++ L Q GI V
Sbjct: 72  AVGATAYVTLEPCSHTGRTPPCAKALIESGVIRVVVAGLDPNPQVAGRGVRLLEQAGIEV 131

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++ ++ ++    +L     +  ++ LKIA S D    MA   S  ITG  ++  V  
Sbjct: 132 TVGILTAQAEVLNKGFLKAMRTQMPYVRLKIATSLDGRTAMATGESKWITGPAAREDVQK 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL-----QEHSPMRIILDPHFKLSLDSKIIKTA 240
           LRAQS AI+ G  TV+ D+P+L  R + L     Q   P  +ILD   +L  + +     
Sbjct: 192 LRAQSGAIITGSETVIVDNPQLNVRSSQLGIAPEQVPHPKVVILDRRERLQYNLQ----- 246

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVA 299
                       D  L      +  +I+Y    +L +LL +LV       +L+E GA+VA
Sbjct: 247 -----------SDYQLC-----RRTDILYWRDDNLTELLKVLVSEYQCYDVLIEAGASVA 290

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCL 352
            SF+  +LVD +I+Y++  ++G+        +PL     +  F   R +  GSD+ L
Sbjct: 291 GSFLQQQLVDELIVYQAPCLLGQQARSMVDINPLSLAQ-QLRFDIKRYEQLGSDMKL 346


>gi|168486049|ref|ZP_02710557.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           CDC1087-00]
 gi|183570882|gb|EDT91410.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           CDC1087-00]
          Length = 366

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 110/320 (34%), Positives = 174/320 (54%), Gaps = 7/320 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G PHAE  AL+   E 
Sbjct: 3   DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + V
Sbjct: 63  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A+S D  I      S  IT   ++  VH 
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIG 321
            +  ++VD + +Y +  + G
Sbjct: 301 ALEQQIVDELKIYIAPKIFG 320


>gi|331012488|gb|EGH92544.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 249

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 102/242 (42%), Positives = 140/242 (57%), Gaps = 11/242 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D  +M+ AL  +R  +  T  NP V C+IV+DG ++G G     G PHAEV AL +A
Sbjct: 6   AALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQA 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPCSH GR+PPCA  ++  G+ RVV  + DP+  VSGRGL  L   G
Sbjct: 66  GELARGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPEVSGRGLLRLMNAG 125

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++ESE +     +L R    + +I +K+A+S D    MA   S  ITG  +++ 
Sbjct: 126 IGVQCGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARSA 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSL 232
           V  LRAQS  +L G  TVLAD   LT R + L              P+R+++D   ++ L
Sbjct: 186 VQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLRVPL 245

Query: 233 DS 234
           D+
Sbjct: 246 DA 247


>gi|319744810|gb|EFV97150.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae ATCC
           13813]
          Length = 369

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 111/317 (35%), Positives = 180/317 (56%), Gaps = 7/317 (2%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M+ AL+ +   +G  + NP V  +IVKD  +I +G     G  HAE QA++ A E+  G
Sbjct: 7   YMALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDISG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           +T YVTLEPC H G+ PPC + +I+ GI++VVV   DP+  VSG+G+  L ++G+ V+  
Sbjct: 67  STLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVEVG 126

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++  E       ++     K+  + LK A++ D  I      S  I+   S+  V  LR 
Sbjct: 127 ILREECDALNERFIFHMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKLRQ 186

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           +  AI+VGI TVLAD+P LTCR+   +  + +RI+ D   K+ LDS ++K+A   P  I 
Sbjct: 187 KCSAIMVGINTVLADNPRLTCRIP--KGEALVRIVCDSQLKIPLDSYLVKSAKTIPTWIA 244

Query: 249 TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           T +D+       ++    +I    +    DLK L+TIL   G+ SLL+EGG+++  S + 
Sbjct: 245 TCSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQDGIDSLLIEGGSSLHFSALE 304

Query: 305 SRLVDSIILYRSQIVIG 321
           + +V+ +I++ +  +IG
Sbjct: 305 AGIVNRLIVFIAPKIIG 321


>gi|242240315|ref|YP_002988496.1| riboflavin biosynthesis protein RibD [Dickeya dadantii Ech703]
 gi|242132372|gb|ACS86674.1| riboflavin biosynthesis protein RibD [Dickeya dadantii Ech703]
          Length = 370

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 123/337 (36%), Positives = 182/337 (54%), Gaps = 24/337 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL  +R  +  TS NP+V C+IV+DG V+G G     G PHAEV AL  AG++
Sbjct: 6   DEFYMARALELARRGIFTTSPNPNVGCVIVRDGEVVGEGFHQKAGEPHAEVHALRMAGDK 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+GR+PPCA  +I  G+ RVV  + DP+ +V+GRGL  L Q GI +
Sbjct: 66  AQGATVYVTLEPCSHHGRTPPCADALIAAGVARVVAAMQDPNPQVAGRGLHRLHQAGIEV 125

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M    +     +L R      ++ LK+  S D    MA   S  IT   ++  V  
Sbjct: 126 CHGVMADAAENINRGFLKRMRTGFPYVQLKMGASVDGRTAMASGESQWITSPQARQDVQR 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QE--HSPMRIILDPHFKLSLDS 234
            RA+S AIL    TVLADDP L  R   L         QE    P+RII+D   +++ + 
Sbjct: 186 FRARSSAILSSSATVLADDPSLAVRWQELDADTQRIYPQESLRQPVRIIVDSQSRVTPEH 245

Query: 235 KII----KTALLAPVIIVTENDDPVLALAFRKKNINI-IYCDCRDLKKLLTILVGRGVTS 289
           +++     T L  P     + D   LA     + I++ +Y +  DL  L+ +L  R + S
Sbjct: 246 RLVSQPGSTWLARP-----QRDG--LAWPSSVEQIDVPLYGEGLDLVALMMLLGKRQINS 298

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           + VE G  +A + + + +VD +I+Y +  ++G+   P
Sbjct: 299 VWVEAGPRLAGALLQANVVDELIVYIAPRLLGDAARP 335


>gi|149011050|ref|ZP_01832355.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
           SP19-BS75]
 gi|149017852|ref|ZP_01834311.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
           SP23-BS72]
 gi|168492136|ref|ZP_02716279.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           CDC0288-04]
 gi|225853791|ref|YP_002735303.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae JJA]
 gi|237649748|ref|ZP_04524000.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CCRI
           1974]
 gi|237821446|ref|ZP_04597291.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CCRI
           1974M2]
 gi|147764686|gb|EDK71616.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
           SP19-BS75]
 gi|147931416|gb|EDK82394.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
           SP23-BS72]
 gi|183573645|gb|EDT94173.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           CDC0288-04]
 gi|225723048|gb|ACO18901.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae JJA]
 gi|301793457|emb|CBW35830.1| riboflavin biosynthesis protein [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           and 5-amino-6-(5-phosphoribosylamino)uracil reductase]
           [Streptococcus pneumoniae INV104]
 gi|332077484|gb|EGI87945.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           GA41301]
 gi|332204191|gb|EGJ18256.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           GA47901]
          Length = 366

 Score =  183 bits (464), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 110/320 (34%), Positives = 174/320 (54%), Gaps = 7/320 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G PHAE  AL+   E 
Sbjct: 3   DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + V
Sbjct: 63  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A+S D  I      S  IT   ++  VH 
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIG 321
            +  ++VD + +Y +  + G
Sbjct: 301 ALEQQIVDELKIYIAPKIFG 320


>gi|307730708|ref|YP_003907932.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1003]
 gi|307585243|gb|ADN58641.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1003]
          Length = 384

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 119/329 (36%), Positives = 173/329 (52%), Gaps = 15/329 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +R  +  T  NP V C+IV++G VIG G T   G  HAE++A+++A
Sbjct: 3   SQTDFVHMERALALARRGMYTTDPNPRVGCVIVQNGEVIGEGFTQPAGQDHAEIRAMKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G + RGATAYVTLEPCSH+GR+PPCA  +IE  + RVV  ++DP+ +VSGRGL  L 
Sbjct: 63  RSRGHDLRGATAYVTLEPCSHFGRTPPCASALIEAQVGRVVAAMEDPNPQVSGRGLAMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++ +E       +++R    R  + +K+A S D   G+    S  ITG  +
Sbjct: 123 DAGIEVRCGLLANEAHELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGVSQWITGEAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H  RA++ AIL GIGTV  DDP +T R        P R+++D   ++   ++I+  
Sbjct: 183 RADGHAWRARASAILTGIGTVREDDPRMTVRAVETPRQ-PQRVLIDSQLEVPPQAQILAG 241

Query: 240 ALLAPVIIVTENDDP---VLALAFRKKNINIIY----CDCRDLKKLLTILVGRGVTSLLV 292
              AP +I   N D      A A R +   I+         DL  +L  L  R V  L V
Sbjct: 242 ---APTLIFCGNLDERHRERAQALRDRGAEIVEMANGAGKVDLPGMLKALGERQVNELHV 298

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           E G  +  S +    VD +++Y +  ++G
Sbjct: 299 EAGYKLNGSLLREGCVDELLVYLAPSLLG 327


>gi|113868804|ref|YP_727293.1| pyrimidine deaminase/reductase [Ralstonia eutropha H16]
 gi|113527580|emb|CAJ93925.1| pyrimidine deaminase/reductase [Ralstonia eutropha H16]
          Length = 371

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 108/310 (34%), Positives = 173/310 (55%), Gaps = 12/310 (3%)

Query: 24  LTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCS 80
           +T+ NP V C++VKDG VIG+G T   G  HAE+QA+++A   G +  G+TAYVTLEPCS
Sbjct: 23  ITTPNPRVGCVLVKDGQVIGQGFTQPAGQDHAEIQAMKDALARGLDPAGSTAYVTLEPCS 82

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLH 139
           H+GR+PPCA  ++  G+ RVV  ++DP+  VSGRGLQ L + G+ V   ++E E +    
Sbjct: 83  HFGRTPPCADALVRAGVARVVAAMEDPNPSVSGRGLQRLREAGVDVRCGLLEKEARDLNI 142

Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199
            +++R       + +K+A S D    +    S  ITG  +++  H  RA++ AIL GIGT
Sbjct: 143 GFVSRMTRGLPWVRIKVAASMDGGTALHDGTSQWITGQAARDDGHAWRARACAILTGIGT 202

Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII--KTALLA-PVIIVTENDDPVL 256
           V  D+P LT R        P R+++D   ++ LD++I+   T   A PV++    +D   
Sbjct: 203 VRDDNPALTVRAIATPRQ-PQRVLVDSRLEVPLDAQILTPDTGQFAKPVLVFCAVEDRER 261

Query: 257 ALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
             A   +   ++         +L+++L  L  RG+  L VE G  +  S +     D ++
Sbjct: 262 QRALEGRGAEVVVLSNPHGKVELRRMLEELGRRGINELHVEAGFKLNGSLVREHCADELL 321

Query: 313 LYRSQIVIGE 322
           +Y +  ++G+
Sbjct: 322 IYLAPKLLGD 331


>gi|329298304|ref|ZP_08255640.1| riboflavin biosynthesis protein RibD [Plautia stali symbiont]
          Length = 367

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 122/324 (37%), Positives = 175/324 (54%), Gaps = 22/324 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DA +M+ AL  +R     T+ NP+V C+IV+DG ++G G     G PHAEV AL  AG+ 
Sbjct: 3   DAHYMARALELARRGQYTTTPNPNVGCVIVRDGEIVGEGWHQRAGEPHAEVHALRMAGDH 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  ACGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIEV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R       I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMNEAEALNRGFLKRMRTSFPWIQLKLGASLDGRTAMASGESQWITSAAARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
           LRA+S AIL    TVLAD+P LT R N L E             P+R+++D   +++   
Sbjct: 183 LRARSSAILTTSATVLADNPSLTVRWNELSETVRQQLDESQLRQPVRVVIDSQQRVTPQH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSL 290
           ++I        ++ TE D    A ++    ++ I    R    DL  ++ +L  R + S+
Sbjct: 243 RLIAQP-GETWLMRTEAD----AQSW-PSGVSQIEVPPRGEQLDLVAMMMLLCQRQINSV 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILY 314
            VE GA +A + + + LVD +I+Y
Sbjct: 297 WVEAGAGLAGALLQAGLVDELIVY 320


>gi|37679045|ref|NP_933654.1| pyrimidine reductase [Vibrio vulnificus YJ016]
 gi|37197787|dbj|BAC93625.1| pyrimidine reductase [Vibrio vulnificus YJ016]
          Length = 368

 Score =  182 bits (463), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 111/333 (33%), Positives = 177/333 (53%), Gaps = 22/333 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D + M  A+  ++  +  T+ NP+V C++++DG ++G G     G PHAEV A+  A
Sbjct: 5   TAIDRQMMLRAIALAKRGLYTTAPNPNVGCVLLRDGEIVGEGFHFRAGEPHAEVHAMRMA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            ++A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RVV  ++DP+ +V+GRG   L + G
Sbjct: 65  ADKAKGATAYVTLEPCSHYGRTPPCAEGLIKAGVSRVVCAMEDPNPQVAGRGFAMLREAG 124

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++++E +    A++ R       + LK+A S D    +A   S  IT   ++  
Sbjct: 125 IEVSVGLLQAEAEALNPAFIKRMKTGMPFVQLKMAASLDGQTALANGKSQWITSPQARRD 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLS 231
           V   RAQS AIL    TVLAD+  L  R + L           Q   P R++LD   +LS
Sbjct: 185 VQRFRAQSGAILSTSKTVLADNASLNVRWSELPSSVQRALPQEQLRQPTRVVLDRQAELS 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
            + K+ +T     +I+  + D P       + N+  ++      +          +  L 
Sbjct: 245 PELKLYQTE-GERLIVGPKGDLPAPLDEHGQINLPQLFTQLSQTQS---------INHLW 294

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           VE GA +A   I  +LVD +I+Y +  ++G  G
Sbjct: 295 VEAGATLAAGLIKHQLVDELIVYLAPKLMGSDG 327


>gi|226942824|ref|YP_002797897.1| riboflavin biosynthesis protein RibD [Azotobacter vinelandii DJ]
 gi|226717751|gb|ACO76922.1| riboflavin biosynthesis protein RibD [Azotobacter vinelandii DJ]
          Length = 361

 Score =  182 bits (463), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 124/333 (37%), Positives = 173/333 (51%), Gaps = 24/333 (7%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL  +R  +  T  NP V C+IV  G ++G G     G PHAEV AL +AGE ARGA
Sbjct: 1   MARALELARQGLYSTHPNPRVGCVIVAAGRIVGEGWHVRAGEPHAEVHALRQAGETARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129
           TAYVTLEPCSH+GR+PPCA+ ++  G+ RVV  + DP+ +VSGRGL  L Q GI V+  +
Sbjct: 61  TAYVTLEPCSHHGRTPPCAEALVAAGVGRVVAAMQDPNPQVSGRGLARLRQAGIEVEVGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E+E +     ++ R       + +K+A+S D    MA   S  ITG  ++  V  LRA+
Sbjct: 121 LEAEARALNAGFVKRMEHGLPLVRVKLAMSLDGRTAMASGESQWITGAPARAAVQRLRAR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDSKIIKT 239
           S  +L G  TVL D   LT R   L           +  P+R+++D   ++ LD    + 
Sbjct: 181 SSVVLTGADTVLVDHARLTVRGEELGLAPEQVALALQRPPLRVLVDGRLRVPLDVPFFQA 240

Query: 240 --ALLAPVIIVTENDDPVLALAFRKKNINIIYC---DCR-DLKKLLTILVGRGVTSLLVE 293
             AL+A V    E D       +R     ++     D R DL  LL  L  RG   +LVE
Sbjct: 241 GPALVATVSAEREVD-------YRAAGHELLAVPGEDGRVDLPALLAELAARGANEVLVE 293

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            G  +A +F    LVD   L+ +   +G    P
Sbjct: 294 AGPRLAGAFARQGLVDEYRLFVAPKFLGSTARP 326


>gi|87308856|ref|ZP_01090995.1| riboflavin bifunctional biosynthesis protein RibG [Blastopirellula
           marina DSM 3645]
 gi|87288567|gb|EAQ80462.1| riboflavin bifunctional biosynthesis protein RibG [Blastopirellula
           marina DSM 3645]
          Length = 373

 Score =  182 bits (463), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 125/372 (33%), Positives = 191/372 (51%), Gaps = 15/372 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S+ D R M  AL+ +    G    NP V C++V+ G VIGRG  A  G PHAE  AL
Sbjct: 1   MQFSADDERHMREALQLAALGQGAAEPNPMVGCVLVQHGQVIGRGYHAKYGGPHAERAAL 60

Query: 61  EEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
            + G+ +  GATAYVTLEPC H+G++PPC   +I   + RVV+   DP   V G G+  L
Sbjct: 61  SDCGDKQVNGATAYVTLEPCCHHGKTPPCTDALIAAKVARVVIAQQDPFGLVDGGGIDQL 120

Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI V   ++E+E +     Y       R  +  K A++ D  +      S  I+  +
Sbjct: 121 KAAGISVQVGLLEAEAQRLNAPYRKLLATGRPWVIAKWAMTLDGKLATHTGHSRWISNEL 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++ +VH LR + DAI+VG  T   DDP LT R  GL+  +P+R+++D    LS   ++++
Sbjct: 181 ARERVHQLRGRMDAIVVGSRTAQLDDPLLTVRPAGLR--TPLRVVVDGDATLSPTHQLVQ 238

Query: 239 TALLAPVIIVTEND-DPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVE 293
           TA   PV++  + + DP    A ++    I      D    L  LL  L  R +T++LVE
Sbjct: 239 TAREVPVLVAVKAEADPARCAALQQAGCEIFAGGGADHGQRLDALLIELGQRRLTNILVE 298

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL-EEGYLEKNFMCVRRDYFGSDVCL 352
           GGA +   F+    +D +  + +  +IG    PSP+  +G+ + +          SDV +
Sbjct: 299 GGAGLLGQFLALGQIDEVFAFIAPKLIGGAQAPSPIGGDGWSDMSEALAL-----SDVSI 353

Query: 353 EYIGKNLCLQEL 364
           E +G N+ +  L
Sbjct: 354 ESLGDNVLMHGL 365


>gi|189500554|ref|YP_001960024.1| riboflavin biosynthesis protein RibD [Chlorobium phaeobacteroides
           BS1]
 gi|189495995|gb|ACE04543.1| riboflavin biosynthesis protein RibD [Chlorobium phaeobacteroides
           BS1]
          Length = 371

 Score =  182 bits (463), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 123/360 (34%), Positives = 187/360 (51%), Gaps = 21/360 (5%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAGEE 66
           R+MS  L  +    G  S NP V  L+V DG +IG G     G PHAEV A+   +  E+
Sbjct: 14  RYMSRCLELAGKGAGYVSPNPMVGSLLVLDGQIIGEGYHERYGGPHAEVNAIASVKDSEQ 73

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            R +T YV LEPCSH+G++PPC+  II+  I RVVV   DP   V+GRG+Q L   G+ +
Sbjct: 74  LRESTLYVNLEPCSHHGKTPPCSDLIIQKNIPRVVVACRDPHRMVAGRGIQKLLDAGVEV 133

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           ++ ++E        A++   V+    ++LK+  + D  I      S  ITG  +++ VH 
Sbjct: 134 IEGVLEERSLKLNEAFMKSHVKNIPFVSLKLGQTLDGKIATVNGLSKWITGQPARDHVHF 193

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR++ DA++ G GT++ADDP LT R   L   +P+R++LD   +L     +      A  
Sbjct: 194 LRSRYDAVMTGSGTIVADDPLLTVR--HLPGRNPLRVVLDRRLQLPETMNVYNGE--AAT 249

Query: 246 IIVTENDDPVLALAFR--KKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299
           I+ T +         R   K + ++    R    DL ++L +L   GV S+ VE G+ ++
Sbjct: 250 IVFTSDAGETTGRRERLQDKGVEVVSVTERNGRLDLDEVLHVLHANGVLSVFVEAGSRLS 309

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS--PL----EEGYLEKNFMCVRRDYFGSDVCLE 353
            S + S LVD I LY +  + G  G+ S  PL     +G +   F      +FG+D+ LE
Sbjct: 310 GSLLQSGLVDKIYLYVAPKIFGGDGLDSFAPLGVDSPQGAISLRFESPV--FFGNDLLLE 367


>gi|332992366|gb|AEF02421.1| riboflavin biosynthesis protein RibD [Alteromonas sp. SN2]
          Length = 404

 Score =  182 bits (462), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 118/367 (32%), Positives = 193/367 (52%), Gaps = 24/367 (6%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCPHAEVQALEEAG 64
            D  +M+ A+R ++     TS NP V C+IV +    IG+G     G PHAE+ AL EAG
Sbjct: 37  IDYYWMAKAIRLAQKGQFTTSPNPRVGCVIVNNNNDSIGQGFHVQAGTPHAEIHALREAG 96

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           ++A+GATAYVTLEPCSHYGR+PPCA+ +I+  + RVV+ + DP+  VSG G++ L   GI
Sbjct: 97  KKAKGATAYVTLEPCSHYGRTPPCAEALIKAQVSRVVIAMTDPNPNVSGNGIRMLQDAGI 156

Query: 125 IVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V   +M +E       ++ R +  + ++ +K+ +S D  I +    S  ITG  ++  V
Sbjct: 157 EVSSDIMSAESAALNPGFIKRMLTGKPYVRVKLGISVDGKIALQNGNSQWITGPEARRDV 216

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCR----------LNGLQEHSPMRIILDPHFKLSLD 233
              RAQS A+L G GTV AD+P L  R          L  +++  P+RII++    LS D
Sbjct: 217 QHYRAQSCAVLTGSGTVKADNPSLLVRPDEAKFAHYPLEAIRQ--PVRIIVNSADDLSRD 274

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292
            + +      P  +V+  +    A    ++++ +   + + D+ KL+  L       + V
Sbjct: 275 YRCMNDG--HPTFVVSTQNS---ADTDNRQHLTVDAMNGKVDISKLMLQLGDMQFNEVWV 329

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGS 348
           E G  +A + + +  VD +I Y++  ++G+ G+       + E N       +     G+
Sbjct: 330 EAGPGLAGALLIAGEVDELICYQAPKLLGDKGVSMVSLPTFTELNQAIELSLIESRQIGN 389

Query: 349 DVCLEYI 355
           D+ L Y+
Sbjct: 390 DIKLRYL 396


>gi|317056285|ref|YP_004104752.1| riboflavin biosynthesis protein RibD [Ruminococcus albus 7]
 gi|315448554|gb|ADU22118.1| riboflavin biosynthesis protein RibD [Ruminococcus albus 7]
          Length = 369

 Score =  182 bits (462), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 113/328 (34%), Positives = 169/328 (51%), Gaps = 10/328 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE---E 66
           FM  AL  +   +G  S NP V  +IV+DG +I  G     G  HAE  A  E      +
Sbjct: 6   FMREALALAEKGMGHVSPNPMVGAVIVRDGNIIASGYHKRYGDLHAERSAFAECDAKDID 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            RGA  YVTLEPC H+G+ PPC   +IE GI+RV V   DP+  V+G+G   L + GI +
Sbjct: 66  CRGADMYVTLEPCCHHGKQPPCTDAVIEHGIKRVFVGSSDPNPLVAGKGTAILREHGIEV 125

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
            + +++ E       +          +TLK A++ D  I      S  ITG  ++  VH 
Sbjct: 126 TEGVLKDECDRLNEIFFKFITTGLPFVTLKYAMTLDGKIACYTGKSQWITGETARKHVHR 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R    AI+VG+GTVLADDP LTCR+  +++  P+RII D H +  LDS I++T+   P 
Sbjct: 186 ERLHHAAIMVGVGTVLADDPMLTCRIKNVRD--PLRIICDTHLRTPLDSNIVRTSEKVPT 243

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           +IV  + D      + K+   ++    +    DL  L+  L    + S+L+EGG  +  S
Sbjct: 244 LIVCGDADSGRIGEYEKRGCKVLSLPDKNGSTDLSALMAYLGKEKIDSVLIEGGGMLGWS 303

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPL 329
            + S +VD ++ Y +  + G     +P+
Sbjct: 304 ALESGIVDKVMAYVAPKIFGGSNAKTPV 331


>gi|78186602|ref|YP_374645.1| riboflavin biosynthesis protein RibD [Chlorobium luteolum DSM 273]
 gi|78166504|gb|ABB23602.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chlorobium
           luteolum DSM 273]
          Length = 366

 Score =  182 bits (462), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 123/360 (34%), Positives = 187/360 (51%), Gaps = 17/360 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DA  M+  +  +    G  S NP V  LIV DG VIG G     G PHAEV A+    + 
Sbjct: 6   DACHMARCIELALQGAGSVSPNPMVGSLIVCDGSVIGEGYHMQCGGPHAEVNAIAAVSDP 65

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +    +T YV LEPCSH+GR+PPC+  IIE  I RVVV   DP+ +V+GRG+  L   G+
Sbjct: 66  SLLSRSTLYVNLEPCSHFGRTPPCSDLIIEKMIPRVVVGCRDPNPKVAGRGIMRLRDSGV 125

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            + + ++E+E      A++T   + R  + LKIA + D  I  A   S  ITG  ++ +V
Sbjct: 126 DVYEGVLEAECLRLNEAFITSHTKGRPFVALKIAETLDGRIATADGASKWITGSEARREV 185

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H LR+  DA+L G  TVL D  +LT R   ++  +P+R++LD   ++  D+ +  +    
Sbjct: 186 HRLRSTYDAVLAGAATVLLDRAQLTVR--DVEGRNPLRVVLDSGLRVPFDAPVFSSDAPT 243

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
            V           A A  KK I +++        DL ++L  L  R V SLLVE G+ ++
Sbjct: 244 LVFAAGRMQGTTEASAAEKKGIEVVFVREVPGGLDLSQVLRELHRRDVLSLLVESGSRLS 303

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS--PLE----EGYLEKNFMCVRRDYFGSDVCLE 353
            +F+ + L D ++++ +  + G   +PS  PL      G ++  F   +   FG D+ LE
Sbjct: 304 AAFVRAGLADKLLMFIAPKLFGADALPSFAPLAVEAPSGAVQLEFG--QSKAFGRDILLE 361


>gi|168216370|ref|ZP_02641995.1| riboflavin biosynthesis protein RibD [Clostridium perfringens NCTC
           8239]
 gi|182381291|gb|EDT78770.1| riboflavin biosynthesis protein RibD [Clostridium perfringens NCTC
           8239]
          Length = 365

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 117/336 (34%), Positives = 180/336 (53%), Gaps = 16/336 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  AL  +R   G  + NP V  +IVK G +IG+G   + G  HAE+ A+  + + 
Sbjct: 2   DEFFMKKALELARKGEGYVNPNPLVGAVIVKGGEIIGQGYHEFFGGNHAEINAINSSIKS 61

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GAT YVTLEPC HYG++PPC + II+   +RVVV   D +  VSG+ ++ L + GI V
Sbjct: 62  TEGATIYVTLEPCCHYGKTPPCIEAIIKNKFKRVVVGTLDQNPLVSGKSIKILRESGIEV 121

Query: 127 D-RMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
              ++E E     +IF + Y+    E R  I LK A++ D  I      S  IT   S+ 
Sbjct: 122 KVGVLEKECIRLNEIF-NFYIK---ENRPFIALKWAMTLDGKIATKEFKSKWITNRKSRE 177

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKT 239
            VH LR +  +I+VGI TVL D+P+L CRLN  +  E    RI+LD   ++ LDS+I+K 
Sbjct: 178 FVHSLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKN 237

Query: 240 ALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294
              +  +I T N  D +     +   I +I  +      ++ ++L  L  + + S+L+EG
Sbjct: 238 QNESKTLIFTTNKKDKIKNEKLKDIGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEG 297

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           G  +  +F+ ++ V+ I  + +  V G     +P+E
Sbjct: 298 GGNLNFTFLENKKVNKIYAFVAPKVFGGKNAITPVE 333


>gi|126440570|ref|YP_001060025.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           668]
 gi|167912128|ref|ZP_02499219.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           112]
 gi|217420854|ref|ZP_03452359.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           576]
 gi|254180983|ref|ZP_04887581.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1655]
 gi|254191828|ref|ZP_04898331.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           Pasteur 52237]
 gi|126220063|gb|ABN83569.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           668]
 gi|157939499|gb|EDO95169.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           Pasteur 52237]
 gi|184211522|gb|EDU08565.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1655]
 gi|217396266|gb|EEC36283.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           576]
          Length = 380

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 117/327 (35%), Positives = 173/327 (52%), Gaps = 11/327 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +   +  T+ NP V C+IVKD +VIG G T   G  HAEVQAL++A
Sbjct: 3   SESDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G + R AT YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L 
Sbjct: 63  RARGNDLRDATVYVTLEPCSHFGRTPPCAHTLIDARVGKVVAAMEDPNPQVSGRGLAMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++  E       +++R    R  + +K A S D    +A   S  ITG  +
Sbjct: 123 DAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238
           ++  H  RA++ AIL GIGTV  DDP+L  R  G+     P R+++D    + L +++++
Sbjct: 183 RDDGHKWRARACAILTGIGTVREDDPQLNVR--GVDTPRQPRRVLIDSRLDIPLAARLLE 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINII-YCDCR---DLKKLLTILVGRGVTSLLVEG 294
              L       +      A A R +   I+   + R   DL  +L  L  RG+  L VE 
Sbjct: 241 GGSLLVFCGALDAQSEPRADALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321
           G  +  S +  R VD +++Y +  ++G
Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLG 327


>gi|110804436|ref|YP_687956.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Shigella flexneri 5 str. 8401]
 gi|110613984|gb|ABF02651.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Shigella
           flexneri 5 str. 8401]
 gi|332760694|gb|EGJ90982.1| riboflavin biosynthesis protein RibD [Shigella flexneri 4343-70]
 gi|333008609|gb|EGK28077.1| riboflavin biosynthesis protein RibD [Shigella flexneri VA-6]
          Length = 361

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 130/367 (35%), Positives = 188/367 (51%), Gaps = 28/367 (7%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+A+GA
Sbjct: 1   MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
           TAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V   +
Sbjct: 61  TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V   RAQ
Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQRAQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDSKIIK 238
           S AIL    TVLADDP LT R + L E +           P+RI++D   +++ + +I++
Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHRIVQ 240

Query: 239 TALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
                      E+     + V  L   +   ++      DL  L+  L  + + S+ VE 
Sbjct: 241 QPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSIWVEA 294

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349
           G  +A   + + LVD +I+Y +  ++G        +P  LE+      F      + G D
Sbjct: 295 GPTLAGVLLQAGLVDELIVYIAPKLLGSDARGLCSLPG-LEKLADAPQFKFKEIRHVGPD 353

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 354 VCLHLVG 360


>gi|167895478|ref|ZP_02482880.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           7894]
 gi|167920101|ref|ZP_02507192.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           BCC215]
 gi|237813427|ref|YP_002897878.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           MSHR346]
 gi|237504754|gb|ACQ97072.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           MSHR346]
          Length = 378

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 117/327 (35%), Positives = 173/327 (52%), Gaps = 11/327 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +   +  T+ NP V C+IVKD +VIG G T   G  HAEVQAL++A
Sbjct: 3   SESDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G + R AT YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L 
Sbjct: 63  RARGNDLRDATVYVTLEPCSHFGRTPPCAHTLIDARVGKVVAAMEDPNPQVSGRGLAMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++  E       +++R    R  + +K A S D    +A   S  ITG  +
Sbjct: 123 DAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238
           ++  H  RA++ AIL GIGTV  DDP+L  R  G+     P R+++D    + L +++++
Sbjct: 183 RDDGHKWRARACAILTGIGTVREDDPQLNVR--GVDTPRQPRRVLIDSRLDIPLAARLLE 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINII-YCDCR---DLKKLLTILVGRGVTSLLVEG 294
              L       +      A A R +   I+   + R   DL  +L  L  RG+  L VE 
Sbjct: 241 GGSLLVFCGALDAQSEPRADALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321
           G  +  S +  R VD +++Y +  ++G
Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLG 327


>gi|311068845|ref|YP_003973768.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Bacillus atrophaeus 1942]
 gi|310869362|gb|ADP32837.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Bacillus atrophaeus 1942]
          Length = 363

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 118/335 (35%), Positives = 172/335 (51%), Gaps = 24/335 (7%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            +  +M+ AL  ++   G T +NP V  ++VK+G ++G G     G  HAEV A++ AG+
Sbjct: 1   MEEYYMNTALELAKQGEGQTGSNPLVGAVVVKNGEIVGMGAHLKYGEAHAEVHAIKMAGK 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
             + A  YVTLEPCSHYG++PPCA+ II  GI+RV V + DP+  V+G+G+  +   GI 
Sbjct: 61  HVKDADIYVTLEPCSHYGKTPPCAELIITSGIKRVFVAMRDPNPLVAGKGISMIKAAGIE 120

Query: 125 ----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
               I+    E   + FLH   T       ++TLK A S D     +   S  IT   ++
Sbjct: 121 VKEGILTDQAEKLNEKFLHYMRT----GLPYVTLKAAASLDGKTATSTGDSKWITSEAAR 176

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKT 239
                 R    +ILVG+GTV AD+P LTCRL N +++  P+R+ILD    +  ++K+I  
Sbjct: 177 QDAQQYRKTHQSILVGVGTVKADNPSLTCRLPNTVKQ--PVRVILDTSLTIPEEAKVILD 234

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK-------LLTILVGRGVTSLLV 292
                 I  T   D     A +KK ++        L+        +L IL   G+ S+ V
Sbjct: 235 QAAPTWIFTTSQAD-----AEKKKRLSDFGVKIFTLENGHIHIPDVLKILAEEGIMSVYV 289

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           EGGAAV  SF+       II Y +  +IG    PS
Sbjct: 290 EGGAAVHGSFVKEGCYQEIIFYIAPKLIGGTHAPS 324


>gi|53725938|ref|YP_103713.1| riboflavin biosynthesis protein RibD [Burkholderia mallei ATCC
           23344]
 gi|67643977|ref|ZP_00442720.1| riboflavin biosynthesis protein RibD [Burkholderia mallei GB8 horse
           4]
 gi|121598467|ref|YP_992112.1| riboflavin biosynthesis protein RibD [Burkholderia mallei SAVP1]
 gi|124385806|ref|YP_001028557.1| riboflavin biosynthesis protein RibD [Burkholderia mallei NCTC
           10229]
 gi|126449378|ref|YP_001081545.1| riboflavin biosynthesis protein RibD [Burkholderia mallei NCTC
           10247]
 gi|166998345|ref|ZP_02264205.1| riboflavin biosynthesis protein RibD [Burkholderia mallei PRL-20]
 gi|254175573|ref|ZP_04882233.1| riboflavin biosynthesis protein RibD [Burkholderia mallei ATCC
           10399]
 gi|254202412|ref|ZP_04908775.1| riboflavin biosynthesis protein RibD [Burkholderia mallei FMH]
 gi|254207743|ref|ZP_04914093.1| riboflavin biosynthesis protein RibD [Burkholderia mallei JHU]
 gi|254356356|ref|ZP_04972632.1| riboflavin biosynthesis protein RibD [Burkholderia mallei
           2002721280]
 gi|52429361|gb|AAU49954.1| riboflavin biosynthesis protein RibD [Burkholderia mallei ATCC
           23344]
 gi|121227277|gb|ABM49795.1| riboflavin biosynthesis protein RibD [Burkholderia mallei SAVP1]
 gi|124293826|gb|ABN03095.1| riboflavin biosynthesis protein RibD [Burkholderia mallei NCTC
           10229]
 gi|126242248|gb|ABO05341.1| riboflavin biosynthesis protein RibD [Burkholderia mallei NCTC
           10247]
 gi|147746659|gb|EDK53736.1| riboflavin biosynthesis protein RibD [Burkholderia mallei FMH]
 gi|147751637|gb|EDK58704.1| riboflavin biosynthesis protein RibD [Burkholderia mallei JHU]
 gi|148025353|gb|EDK83507.1| riboflavin biosynthesis protein RibD [Burkholderia mallei
           2002721280]
 gi|160696617|gb|EDP86587.1| riboflavin biosynthesis protein RibD [Burkholderia mallei ATCC
           10399]
 gi|238525453|gb|EEP88881.1| riboflavin biosynthesis protein RibD [Burkholderia mallei GB8 horse
           4]
 gi|243065414|gb|EES47600.1| riboflavin biosynthesis protein RibD [Burkholderia mallei PRL-20]
          Length = 380

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 117/327 (35%), Positives = 173/327 (52%), Gaps = 11/327 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +   +  T+ NP V C+IVKD +VIG G T   G  HAEVQAL++A
Sbjct: 3   SESDFTHMQRALALAARGMYTTAPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G + R AT YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L 
Sbjct: 63  RARGNDLRDATVYVTLEPCSHFGRTPPCAHTLIDARVGKVVAAMEDPNPQVSGRGLAMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++  E       +++R    R  + +K A S D    +A   S  ITG  +
Sbjct: 123 DAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238
           ++  H  RA++ AIL GIGTV  DDP+L  R  G+     P R+++D    + L +++++
Sbjct: 183 RDDGHKWRARACAILTGIGTVREDDPQLNVR--GVDTPRQPRRVLIDSRLDIPLAARLLE 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINII-YCDCR---DLKKLLTILVGRGVTSLLVEG 294
              L       +      A A R +   I+   + R   DL  +L  L  RG+  L VE 
Sbjct: 241 GGSLLVFCGALDAQSEPRADALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321
           G  +  S +  R VD +++Y +  ++G
Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLG 327


>gi|282889950|ref|ZP_06298485.1| hypothetical protein pah_c008o037 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500143|gb|EFB42427.1| hypothetical protein pah_c008o037 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 359

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 115/325 (35%), Positives = 174/325 (53%), Gaps = 9/325 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  +     L+  NP V  +IVK G ++G G T   G  HAE+ AL +A  +A  +
Sbjct: 1   MDRALALATQARLLSPPNPWVGAVIVKQGKIVGEGFTQAPGEAHAEIMALRQALHQAENS 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           T YVTLEPCSH+G++PPC   II+  I  VV+ ++DPD +VSGRG+Q L + GI V   +
Sbjct: 61  TLYVTLEPCSHFGKTPPCVNAIIQAKIAHVVIALEDPDPQVSGRGIQKLKEAGISVTVGV 120

Query: 131 ESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           E +     L  YL ++   R     K A+S D  +  +   S  IT  +S+     LRA+
Sbjct: 121 EQQRATELLEPYLFQRKTGRPFCVAKAAISLDGRVAASDHTSKWITNELSRQDAQRLRAE 180

Query: 190 SDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLS-LDSKIIKTALLAPVII 247
           S AIL+G GT   D P LT R  + L   +P+R++LD    L+ L S +  T L    I+
Sbjct: 181 SQAILIGSGTAKYDHPRLTVRSFSPLPYQAPLRVVLDSRGTLTDLSSPLFNTNLAPTCIL 240

Query: 248 VTENDDPVLALAFRKKNI-NIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            T+     +   ++   I +II    +     DL +++  L  +G+  +L+EGGA +   
Sbjct: 241 TTDRCSTEIRDMWQSHGIESIILSQAKNGEGVDLNEVMKTLGKKGILQVLIEGGATLLGQ 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIP 326
           F++ +L+ ++ LY    V+G  GIP
Sbjct: 301 FMHEQLIQTLHLYIGPKVLGCDGIP 325


>gi|315179335|gb|ADT86249.1| riboflavin biosynthesis protein RibD [Vibrio furnissii NCTC 11218]
          Length = 369

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 116/338 (34%), Positives = 177/338 (52%), Gaps = 24/338 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP  +SFD + MS A++ ++     T+ NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPTFTSFDYQMMSRAIKLAQRGRFTTAPNPNVGCVITQGESIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           L  AGE++ GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RV+  + DP+ +V+GRG+  L
Sbjct: 61  LRMAGEQSVGATAYVTLEPCSHYGRTPPCAEGLIKAGVARVICAMQDPNPQVAGRGIDML 120

Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            + GI V   ++E++      A++ R       + LK+A S D    +A   S  IT   
Sbjct: 121 REAGIEVQVGLLEADALALNPAFIKRMKTGMPWVQLKMAASLDGQTALANGRSQWITSPQ 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPH 227
           ++  V   RAQ+ A+L    TVLAD+  LT R   L  H            P+R ILD  
Sbjct: 181 ARQDVQAYRAQAGAVLSTSQTVLADNASLTVRWQDLPAHVQATYAEQHLRQPVRAILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-RG 286
            +L  +  +  T   + V+ V   D  V      +  +N        L+++L  L     
Sbjct: 241 HQLHRELTLYATD--SAVLRVANQDADVCVALDEQGQLN--------LREVLGALAKHHN 290

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           +  + VE GA +A S +   LVD +++Y +  ++G  G
Sbjct: 291 INHIWVEAGATLAKSLLEQDLVDELVVYLAPKIMGSDG 328


>gi|88859176|ref|ZP_01133817.1| Riboflavin biosynthesis protein [Pseudoalteromonas tunicata D2]
 gi|88819402|gb|EAR29216.1| Riboflavin biosynthesis protein [Pseudoalteromonas tunicata D2]
          Length = 373

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 113/334 (33%), Positives = 177/334 (52%), Gaps = 12/334 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  ++ D ++M+ A+  ++     TS NP+V C++VKDG ++G+G     G  HAEV AL
Sbjct: 1   MSFTALDYQYMALAIELAKKGRYTTSPNPNVGCVLVKDGQIVGQGYHQKAGEGHAEVHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +A E+A GATAYVTLEPCSH GR+ PCA  ++  G+ +V+  + DP+  VSGRGL  L 
Sbjct: 61  AQAKEQALGATAYVTLEPCSHTGRTGPCALALVNAGVIKVIAAMVDPNPAVSGRGLAILE 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI     +M+ E +     +L R       +  K+A S D    +A   S  ITG ++
Sbjct: 121 KAGIQTAHGLMQVEAEALNVGFLKRMRNAMPFVQCKLAASLDGKTALANGLSKWITGPLA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL--------QEHSPMRIILDPHFKLS 231
           + QV   RAQS A+L G  TVL D+ ++  R + L        Q   P+R+++D   +L+
Sbjct: 181 RAQVQDYRAQSCAVLTGADTVLVDNAKMNVRYDELINPPFSLAQLRQPIRVVIDSKHRLT 240

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSL 290
            D    +  + +PVII+T   D          ++ +   + + DL + + +L  RG+  +
Sbjct: 241 PDLAFFQ--IESPVIILTTKLDISERWPHFVSHLLVPELNGQVDLSQAMQLLGARGINHI 298

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            +E G  +A       LVD  I Y +  +IG  G
Sbjct: 299 WLEAGHTLAGQMAQQGLVDQFIFYLAPKLIGHSG 332


>gi|15902208|ref|NP_357758.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae R6]
 gi|116515773|ref|YP_815688.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae D39]
 gi|148996604|ref|ZP_01824322.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
           SP11-BS70]
 gi|168576390|ref|ZP_02722273.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           MLV-016]
 gi|182683162|ref|YP_001834909.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           CGSP14]
 gi|303255119|ref|ZP_07341195.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           BS455]
 gi|307066860|ref|YP_003875826.1| pyrimidine reductase, riboflavin biosynthesis [Streptococcus
           pneumoniae AP200]
 gi|15457706|gb|AAK98968.1| Riboflavin biosynthese; a deaminase [Streptococcus pneumoniae R6]
 gi|116076349|gb|ABJ54069.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae D39]
 gi|147757179|gb|EDK64218.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
           SP11-BS70]
 gi|182628496|gb|ACB89444.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           CGSP14]
 gi|183577789|gb|EDT98317.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           MLV-016]
 gi|301801129|emb|CBW33802.1| riboflavin biosynthesis protein [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           and 5-amino-6-(5-phosphoribosylamino)uracil reductase]
           [Streptococcus pneumoniae INV200]
 gi|302597949|gb|EFL65019.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           BS455]
 gi|306408397|gb|ADM83824.1| Pyrimidine reductase, riboflavin biosynthesis [Streptococcus
           pneumoniae AP200]
          Length = 366

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 110/320 (34%), Positives = 174/320 (54%), Gaps = 7/320 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G PHAE  AL+   E 
Sbjct: 3   DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + V
Sbjct: 63  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A+S D  I      S  IT   ++  VH 
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 183 LRHYVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIG 321
            +  ++VD + +Y +  + G
Sbjct: 301 ALEQQIVDELKIYIAPKIFG 320


>gi|229542331|ref|ZP_04431391.1| riboflavin biosynthesis protein RibD [Bacillus coagulans 36D1]
 gi|229326751|gb|EEN92426.1| riboflavin biosynthesis protein RibD [Bacillus coagulans 36D1]
          Length = 370

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 116/324 (35%), Positives = 178/324 (54%), Gaps = 7/324 (2%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL  +    G TS NP V  ++VK+G + G       G  HAE  A+E+AG  A G
Sbjct: 6   YMQLALHLAESVAGQTSPNPPVGSVVVKNGTIAGMAAHLKAGEKHAERLAVEQAGPLAEG 65

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128
           A  +VTLEPC+HYG++PPCA F+IE GI+ V +   DP+  V+G+G++ L Q G+ V+  
Sbjct: 66  AEVFVTLEPCAHYGKTPPCADFLIEKGIKTVYIAALDPNPLVAGKGIEKLRQAGVKVETG 125

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +++ + +     +      K   +T+K A++ D  I      S  IT   ++     LR+
Sbjct: 126 ILKEQAEKLYRPFFHFIQTKTPFVTVKTAMTADGKIASETRDSKWITSEEARRDARRLRS 185

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DAILVGI TVL D+P LT RL   ++ +P+RI+LD H ++  ++K++     AP II 
Sbjct: 186 RHDAILVGIQTVLHDNPLLTTRLPHSRK-NPIRIVLDTHLRIPPEAKVLSGD--APTIIF 242

Query: 249 TENDDPV-LALAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
             +D P       ++ ++ ++      L  + +L  L  +G+ +LLVEGGAAV  SF+  
Sbjct: 243 CGSDAPKEKEQCLKQLDVEVVRMPHARLLIRDVLAALGEKGIMTLLVEGGAAVNGSFLKE 302

Query: 306 RLVDSIILYRSQIVIGEGGIPSPL 329
             V   I Y +  VIG    PSP 
Sbjct: 303 GAVQQYIFYIAPKVIGGKNAPSPF 326


>gi|53720234|ref|YP_109220.1| multifunctional riboflavin biosynthetic protein [deaminase,
           reductase [Burkholderia pseudomallei K96243]
 gi|76810186|ref|YP_334473.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1710b]
 gi|126453712|ref|YP_001067304.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1106a]
 gi|134280288|ref|ZP_01766999.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           305]
 gi|167720794|ref|ZP_02404030.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           DM98]
 gi|167739778|ref|ZP_02412552.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 14]
 gi|167825410|ref|ZP_02456881.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 9]
 gi|167846901|ref|ZP_02472409.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           B7210]
 gi|167903861|ref|ZP_02491066.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           NCTC 13177]
 gi|226193754|ref|ZP_03789356.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           Pakistan 9]
 gi|242314762|ref|ZP_04813778.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1106b]
 gi|254196130|ref|ZP_04902555.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           S13]
 gi|254259958|ref|ZP_04951012.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1710a]
 gi|254298894|ref|ZP_04966344.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           406e]
 gi|52210648|emb|CAH36632.1| multifunctional riboflavin biosynthetic protein [deaminase,
           reductase [Burkholderia pseudomallei K96243]
 gi|76579639|gb|ABA49114.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1710b]
 gi|126227354|gb|ABN90894.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1106a]
 gi|134248295|gb|EBA48378.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           305]
 gi|157808908|gb|EDO86078.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           406e]
 gi|169652874|gb|EDS85567.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           S13]
 gi|225934059|gb|EEH30044.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           Pakistan 9]
 gi|242138001|gb|EES24403.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1106b]
 gi|254218647|gb|EET08031.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1710a]
          Length = 378

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 117/327 (35%), Positives = 173/327 (52%), Gaps = 11/327 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +   +  T+ NP V C+IVKD +VIG G T   G  HAEVQAL++A
Sbjct: 3   SESDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G + R AT YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L 
Sbjct: 63  RARGNDLRDATVYVTLEPCSHFGRTPPCAHTLIDARVGKVVAAMEDPNPQVSGRGLAMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++  E       +++R    R  + +K A S D    +A   S  ITG  +
Sbjct: 123 DAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238
           ++  H  RA++ AIL GIGTV  DDP+L  R  G+     P R+++D    + L +++++
Sbjct: 183 RDDGHKWRARACAILTGIGTVREDDPQLNVR--GVDTPRQPRRVLIDSRLDIPLAARLLE 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINII-YCDCR---DLKKLLTILVGRGVTSLLVEG 294
              L       +      A A R +   I+   + R   DL  +L  L  RG+  L VE 
Sbjct: 241 GGSLLVFCGALDAQSEPRADALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321
           G  +  S +  R VD +++Y +  ++G
Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLG 327


>gi|148976617|ref|ZP_01813304.1| riboflavin-specific deaminase [Vibrionales bacterium SWAT-3]
 gi|145963968|gb|EDK29226.1| riboflavin-specific deaminase [Vibrionales bacterium SWAT-3]
          Length = 367

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 115/336 (34%), Positives = 180/336 (53%), Gaps = 27/336 (8%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62
           S  D + MS A+  ++  +  T+ NP+V C+IV+ DG ++G G  A  G PHAEV A+  
Sbjct: 5   SPLDFQMMSRAIHLAKRGIYTTAPNPNVGCVIVQTDGQIVGEGFHAKAGEPHAEVHAMRM 64

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG++A+GAT YVTLEPCSHYGR+PPCA+ +I+  + +V+  + DP+ +V+GRG++ L   
Sbjct: 65  AGDKAKGATVYVTLEPCSHYGRTPPCAEGLIKAQVAKVICAMQDPNPKVAGRGIKMLRDA 124

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V+  ++E +      A++ R       + LK+A S D    +A   S  IT   ++ 
Sbjct: 125 GIEVEIGLLEQDALDLNPAFIKRMQTGMPFVQLKMAASLDGQTALANGQSQWITSPAARR 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----QEH-------SPMRIILDPHFKL 230
            V   RA++ A+L    TV+ D+  L  R   L    Q H        P+R+ILD   +L
Sbjct: 185 DVQNYRAKAGAVLSTSQTVIDDNASLNVRWAELPSSAQAHYAEANVRQPVRVILDRQNQL 244

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVT 288
                        P + + ++  PVL +A    +I I   +    DL +L+  L    + 
Sbjct: 245 R------------PELKLYQSPTPVLRVAEASADIEIGTTETGQLDLHELMCQLPANHID 292

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            + VE GA +A S I ++LVD +ILY +  ++G  G
Sbjct: 293 HIWVEAGATLAKSLIEAQLVDELILYLAPKLMGSDG 328


>gi|85860188|ref|YP_462390.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Syntrophus aciditrophicus SB]
 gi|85723279|gb|ABC78222.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Syntrophus aciditrophicus SB]
          Length = 380

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 117/324 (36%), Positives = 176/324 (54%), Gaps = 9/324 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +R   G  S NP V  +IVK+  +IG G     G  HAE+ AL  A E 
Sbjct: 3   DEFYMKRALQLARKGEGWVSPNPMVGSVIVKNDRIIGEGYHRKFGEAHAEINALNGAKES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A G+T YV+LEPCSHYG++PPC + ++ C  +RVV+   DP+  V+GRG+  L + GI V
Sbjct: 63  AEGSTIYVSLEPCSHYGKTPPCVERLVACRPKRVVIGTTDPNPLVAGRGIGILKRNGIEV 122

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E   +    ++L     +   +TLK A + D  I  +   S  I+   S+   H 
Sbjct: 123 TVGVLEEVCREINESFLKFIQFRIPFVTLKYAQTLDGRIATSTGHSRWISSPPSRRFAHR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR   DAILVGIGTVL+DDPELT RL  ++  +P+RI+LD   ++ L ++I++    A  
Sbjct: 183 LRHAHDAILVGIGTVLSDDPELTVRL--VRGKNPLRIVLDSRLRIPLTARILQEQDQAKT 240

Query: 246 IIVTENDDPVLALA-FRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVA 299
           ++VT +      L+    + I  +          DL +LL  L  RG+ S+LVEGG+ + 
Sbjct: 241 LMVTTDHADRKKLSQLNDRGIETLILPVESSGRIDLNRLLRELGSRGIASVLVEGGSGIL 300

Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323
            + +   L D +I   +  + G G
Sbjct: 301 TALMAQDLADRLIAIIAPKISGRG 324


>gi|167837547|ref|ZP_02464430.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
           MSMB43]
          Length = 374

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 115/327 (35%), Positives = 173/327 (52%), Gaps = 11/327 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +   +  T+ NP V C+IVKD +VIG G T   G  HAEVQAL++A
Sbjct: 3   SESDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G + R AT YVTLEPCSH+GR+PPC+  +I+  + +VV  ++DP+ +VSGRGL  L 
Sbjct: 63  RARGNDLRDATVYVTLEPCSHFGRTPPCSHALIDARVGKVVAAMEDPNPQVSGRGLAMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++  E       +++R    R  + +K A S D    +A   S  ITG  +
Sbjct: 123 DAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238
           +   H  RA++ A+L GIGTV  DDP+L  R  G+     P R+++D    + L +++++
Sbjct: 183 REDGHKWRARACAVLTGIGTVREDDPQLNVR--GVDTPRQPRRVLIDSRLDIPLAARLLE 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINII-YCDCR---DLKKLLTILVGRGVTSLLVEG 294
              L       ++     A A R +   I+   + R   DL  +L  L  RG+  L VE 
Sbjct: 241 GGSLLIFCGALDSQSEARAQALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321
           G  +  S +  R VD +++Y +  ++G
Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLG 327


>gi|297155739|gb|ADI05451.1| putative riboflavin/cytosine deaminase [Streptomyces
           bingchenggensis BCW-1]
          Length = 378

 Score =  182 bits (461), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 118/334 (35%), Positives = 175/334 (52%), Gaps = 17/334 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE 61
            ++ +A  M  A+  +   +G TS NP V C+I+  DG   G G     G PHAEV AL 
Sbjct: 2   ATTAEAEAMRRAIALAARGLGHTSPNPVVGCVILDADGRTAGEGWHQRAGGPHAEVHALR 61

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AGE ARG TA VTLEPC+H GR+ PCAQ +++ GI RVV  V DP+ + +G      + 
Sbjct: 62  AAGERARGGTAVVTLEPCNHTGRTGPCAQALLDAGIVRVVYAVADPNAKAAGGAATLAAA 121

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
              +   ++  +      A+LT     R  +  K A + D     A   S  IT   S+ 
Sbjct: 122 GTAVESGLLADQAAAVNEAWLTSMRFGRPFVLWKYAATLDGRSAAADGTSRWITSAESRA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR----------LNGLQEHSPMRIILDPHFKLS 231
            VH LRA+SDA++VG GT+ ADDP L  R           NG ++  P+R++LD    ++
Sbjct: 182 DVHRLRAESDAVVVGSGTLRADDPHLAVRGASGSNGASGSNGARQ--PLRVVLDSKATIA 239

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRK--KNINIIYCDCRDLKKLLTILVGRGVTS 289
            D++++     AP +I    D P + LA  +  +    I     D+  LL  L GRG+ S
Sbjct: 240 PDARVLDG--TAPTLIAVAEDAPAVRLAGAETVRLPRAISGPGLDIPALLGELHGRGIRS 297

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           +L+EGG  +A +F+ +R VD ++ Y +  ++G G
Sbjct: 298 VLLEGGPTLAGAFLAARAVDKVVGYLAPALLGAG 331


>gi|145628121|ref|ZP_01783922.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae
           22.1-21]
 gi|144979896|gb|EDJ89555.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae
           22.1-21]
          Length = 339

 Score =  182 bits (461), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 111/302 (36%), Positives = 168/302 (55%), Gaps = 16/302 (5%)

Query: 35  IVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
           I K+G ++G G     G PHAE  AL +AGE A+GATAYVTLEPCSHYGR+PPCA  +IE
Sbjct: 3   IGKNGEIVGEGFHFKAGQPHAERVALAQAGENAKGATAYVTLEPCSHYGRTPPCALGLIE 62

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHIT 153
            G+ +V+  + DP+ +V+G+GL+ LS  GI     ++  + +     +L R  +    + 
Sbjct: 63  AGVVKVIAAMQDPNPQVAGKGLKMLSDAGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQ 122

Query: 154 LKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213
           LK+A+S D    MA   S  ITG  +++ V  +RA+S A+L    TV+ADDP L  R + 
Sbjct: 123 LKLAMSLDGRTAMASGESKWITGPDARSDVQKMRAKSSALLSTSTTVIADDPSLNVRWDE 182

Query: 214 LQEH-----------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
             E+            P+R+ILD   ++    K+  T   +PV +V+   +P     F  
Sbjct: 183 FPENLKTEYKEEDLRQPVRVILDSQHRIQPTHKLFLTH--SPVWLVS--SEPRDLTGFPD 238

Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
               II      LK+L+  L  R + +L VE GA +A S I+++LVD +I+Y +  ++G+
Sbjct: 239 FCEQIILPKENLLKELMRELGKRQINTLWVEAGANLAGSLIDAKLVDELIIYIAPKLLGD 298

Query: 323 GG 324
             
Sbjct: 299 NA 300


>gi|119474644|ref|ZP_01614997.1| riboflavin-specific deaminase/reductase [marine gamma
           proteobacterium HTCC2143]
 gi|119450847|gb|EAW32080.1| riboflavin-specific deaminase/reductase [marine gamma
           proteobacterium HTCC2143]
          Length = 370

 Score =  182 bits (461), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 113/335 (33%), Positives = 178/335 (53%), Gaps = 18/335 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DA +M  A+  +   +   S NP V C+IV++G +IGRG     G  HAEV A+ +AG  
Sbjct: 3   DADYMQLAIDLAEKGLYTASPNPRVGCIIVRNGQIIGRGYHVRTGQAHAEVNAIADAGN- 61

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
              AT YVTLEPCSH GR+PPC+  +I   + RVVV + DP+  V+G G+  L Q GI+V
Sbjct: 62  VEDATVYVTLEPCSHTGRTPPCSDALITANVARVVVAMADPNPLVAGSGIAKLEQAGIVV 121

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  ++ S+ +     Y+ R       + +K+A+S D    MA   S  ITG  +++ V  
Sbjct: 122 ELGLLASQARQLNPGYIKRMELGLPWVRVKLAMSLDGRTAMASGESQWITGKRARSDVQQ 181

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN--GLQ--------EHSPMRIILDPHFKLSLDSK 235
           LRA+S  ++ G+ T++ADD  LT R +  GL+        E  P+R++LD + +L   +K
Sbjct: 182 LRARSCVVMSGVNTIIADDASLTVRADELGLEAGLAKEAAEQQPVRVVLDSNLRLPTTAK 241

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291
           I+       +II+T  ++ V   A       +++C  +    DL  +L  L    V  +L
Sbjct: 242 ILSQP--GRLIIMTAVENSVAEQALVAMGAEVVHCGNKNGQVDLDNVLQFLAEMSVNEIL 299

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           VE GA ++ +   + LVD   +Y +  ++G    P
Sbjct: 300 VEAGATLSGALAEAGLVDHYTVYMAPTLLGNTARP 334


>gi|118595047|ref|ZP_01552394.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
           C-terminal [Methylophilales bacterium HTCC2181]
 gi|118440825|gb|EAV47452.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
           C-terminal [Methylophilales bacterium HTCC2181]
          Length = 363

 Score =  182 bits (461), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 108/323 (33%), Positives = 170/323 (52%), Gaps = 9/323 (2%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
            FM+ A+  ++  +G T  NP V  + VKD +VIG G  A  G  HAEV AL+EAG  A+
Sbjct: 8   EFMALAISLAKQGLGKTQPNPVVGAIAVKDSVVIGSGFHAKAGKDHAEVLALKEAGAGAK 67

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           G+T Y+TLEPC H G++PPC   I+  G+ +VVV   DP+  V+G+GL  L   GI +V+
Sbjct: 68  GSTLYITLEPCGHVGKTPPCVDLILSSGVTKVVVASSDPNPLVNGKGLAVLRSHGIEVVE 127

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++  + +     + +R  +   ++  KIA S D    +A   S  IT   S+  V   R
Sbjct: 128 DVLRLQAEALNTGFFSRMTKNLPYVRSKIASSIDGRTALANGDSQWITSEASRQDVQQWR 187

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           A++ AIL G+GT+  D+P L  R N  +   P R+I D H  +  +++I+K      +I+
Sbjct: 188 ARACAILTGVGTIHKDNPRLNVR-NLDESDQPFRVIADTHLSIDPEAQILKQ---KNIIL 243

Query: 248 VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           +  ND    A     + + +I    +    DL+ L+  L       +LVE G  +    +
Sbjct: 244 MFCNDPHNKASQLEAQGVRLIPITSKDNRIDLEVLMQQLASLAFNEVLVESGPTLNGQLL 303

Query: 304 NSRLVDSIILYRSQIVIGEGGIP 326
              LVD +I+Y++ I++G    P
Sbjct: 304 ELGLVDELIIYQAPIIMGGNANP 326


>gi|116623314|ref|YP_825470.1| 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidine
           deaminase [Candidatus Solibacter usitatus Ellin6076]
 gi|116226476|gb|ABJ85185.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 369

 Score =  182 bits (461), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 117/322 (36%), Positives = 165/322 (51%), Gaps = 14/322 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL  +R    L S NP V  +IV+DG V+GRG   Y G  HAE+ AL +AGE+ARG
Sbjct: 5   YMREALDLARKGRSLASPNPLVGAVIVRDGKVVGRGFHTYAGLHHAEIIALAQAGEQARG 64

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI---IV 126
           A  Y+ LEPCSH GR+PPC   +I  GI RVV  + DP+  V+G+G   L + GI   + 
Sbjct: 65  AEIYLNLEPCSHQGRTPPCVDALIRAGIARVVAPLSDPNPLVAGQGFARLREAGIEVVMA 124

Query: 127 DRMMESEGKI---FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
           D      GK+   FLH  LT     R  +TLK A++ D  I         IT   ++  V
Sbjct: 125 DEFAAEAGKLNEPFLHFMLT----GRPLVTLKTAITLDGKISAPDDNRGWITSERARAHV 180

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
             LR   DAIL GIGTVLADD  L+ R    +    +RI++D   +L LDSK+ ++A   
Sbjct: 181 QELRHDHDAILTGIGTVLADDCLLSDRTGHPRCRPLLRIVMDSQLRLPLDSKMARSANGD 240

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVA 299
            + I T             + I ++  D      DL+ ++  L      SL++E G+ + 
Sbjct: 241 VLAITTSAASSERRKMLESRGIQVLVFDGPGGRADLRSIVEWLGRHRYLSLMIEAGSKLN 300

Query: 300 HSFINSRLVDSIILYRSQIVIG 321
            S +   +VD +  Y    ++G
Sbjct: 301 WSALEGNVVDRVFFYYGPKILG 322


>gi|254253006|ref|ZP_04946324.1| Pyrimidine reductase [Burkholderia dolosa AUO158]
 gi|124895615|gb|EAY69495.1| Pyrimidine reductase [Burkholderia dolosa AUO158]
          Length = 373

 Score =  182 bits (461), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 119/330 (36%), Positives = 175/330 (53%), Gaps = 17/330 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +   +  T+ NP V C+IVKDG VIG G T   G  HAEVQAL++A
Sbjct: 3   SDIDFAHMQRALALAARGMYTTAPNPRVGCVIVKDGSVIGEGFTQPAGQDHAEVQALKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G +  GAT YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L 
Sbjct: 63  RARGHDVAGATVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLTMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++  E       +++R    R  + +K A S D    +    S  ITG  +
Sbjct: 123 DAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238
           +   H  RA++ AIL GIGTV  D+P LT R  G+     P R+++D   +L LD+++++
Sbjct: 183 RADGHAWRARACAILTGIGTVREDNPLLTVR--GIDTPRQPQRVLIDSRLELPLDARLLE 240

Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291
               AP++I     D      A A   +   I+         DL  +L+ L  RG+  L 
Sbjct: 241 G---APLLIFCGRLDAGSEARANALEARGAEIVSLANAHGKVDLPAMLSALGARGINELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           VE G  +  S +  + VD +++Y +  ++G
Sbjct: 298 VEAGHKLNGSLLREQCVDELLVYLAPSLLG 327


>gi|27363797|ref|NP_759325.1| riboflavin biosynthesis protein RibD [Vibrio vulnificus CMCP6]
 gi|27359914|gb|AAO08852.1| riboflavin biosynthesis protein RibD [Vibrio vulnificus CMCP6]
          Length = 368

 Score =  182 bits (461), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 117/334 (35%), Positives = 182/334 (54%), Gaps = 24/334 (7%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D + M  A+  ++  +  T+ NP+V C++++DG ++G G     G PHAEV A+  A
Sbjct: 5   TAIDRQMMLRAIALAKRGLYTTAPNPNVGCVLLRDGEIVGEGFHFRAGEPHAEVHAMRMA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G++A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RVV  ++DP+ +V+GRG   L + G
Sbjct: 65  GDKAKGATAYVTLEPCSHYGRTPPCAEGLIKAGVSRVVCAMEDPNPQVAGRGFAMLREAG 124

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++++E +    A++ R       + LK+A S D    +A   S  IT   ++  
Sbjct: 125 IEVSVGLLQAEAEALNPAFIKRMKMGMPFVQLKMAASLDGQTALANGKSQWITSPQARRD 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLS 231
           V   RAQS AIL    TVLAD+  L  R + L           Q   P R++LD   +LS
Sbjct: 185 VQRFRAQSGAILSTSKTVLADNASLNVRWSELPSSVQRALPQEQLRQPTRVVLDRQAELS 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSL 290
            + K+ +T     +I+  + D P    A   ++  I      DL +L   L   + +  L
Sbjct: 245 PELKLYQTE-GERLIVGPKGDLP----APLDEHGQI------DLPQLFAQLSQTQLINHL 293

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            VE GA +A   I  +LVD +I+Y +  ++G  G
Sbjct: 294 WVEAGATLAAGLIKHQLVDELIVYLAPKLMGSDG 327


>gi|145219912|ref|YP_001130621.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Prosthecochloris vibrioformis DSM 265]
 gi|145206076|gb|ABP37119.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chlorobium
           phaeovibrioides DSM 265]
          Length = 357

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/314 (35%), Positives = 168/314 (53%), Gaps = 9/314 (2%)

Query: 15  LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--RGATA 72
           L  +R   G  S NP V  +IV DG V+G G     G PHAEV A+   G+ A  R +T 
Sbjct: 5   LELARQGAGAVSPNPMVGSVIVCDGEVVGEGYHEAFGGPHAEVNAIASVGDGAVLRRSTL 64

Query: 73  YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMME 131
           YV LEPCSH+G++PPCA  IIE GIRRVV+   DP+ +V+GRG+  L   G+ +++ ++E
Sbjct: 65  YVNLEPCSHHGKTPPCADLIIEKGIRRVVIGCGDPNPQVAGRGVAKLRSAGVEVLEGVLE 124

Query: 132 SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191
           +E K    A++T   E R  + LK+A + D  I  A   S  ITG  ++ +VH LR   D
Sbjct: 125 AESKRLNEAFMTSHAEGRPFVALKLAETLDGRIATADGQSKWITGDAARLEVHRLRCSYD 184

Query: 192 AILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251
           A+L G  T+ AD   LT R       +P+R++LDP   LS D+ +        +      
Sbjct: 185 AVLSGAATIRADGSRLTVRH--CAGRNPLRVVLDPSLSLSPDAPVFGDEAKTLLFASQSM 242

Query: 252 DDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
           +    AL +    + +++ +      DL+ +L  L  R V S+LVE G  ++ S    RL
Sbjct: 243 EGSPSALRYAAIGVEMVFVEEGTGGLDLRAVLDELHRRQVLSVLVESGGRLSASLARERL 302

Query: 308 VDSIILYRSQIVIG 321
           +D + ++ +  + G
Sbjct: 303 LDKLYMFIAPKLFG 316


>gi|77409347|ref|ZP_00786049.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
           COH1]
 gi|77172049|gb|EAO75216.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
           COH1]
          Length = 362

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/316 (35%), Positives = 179/316 (56%), Gaps = 7/316 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ +   +G  + NP V  +IVKD  +I +G     G  HAE QA++ A E+  G+
Sbjct: 1   MALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDISGS 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129
           T YVTLEPC H G+ PPC + +I+ GI++VVV   DP+  VSG+G+  L ++G+ V+  +
Sbjct: 61  TLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVEVGI 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +  E       ++     K+  + LK A++ D  I      S  I+   S+  V  LR +
Sbjct: 121 LREECDALNERFIFHMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKLRQK 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
             AI+VGI TVLAD+P LTCR+   +  + +RI+ D   K+ LDS ++K+A   P  I T
Sbjct: 181 CSAIMVGINTVLADNPRLTCRIP--KGEALVRIVCDSQLKIPLDSYLVKSAKTIPTWIAT 238

Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
            +D+       ++    +I    +    DLK L+TIL   G+ SLL+EGG+++  S + +
Sbjct: 239 CSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQEGIDSLLIEGGSSLHFSALEA 298

Query: 306 RLVDSIILYRSQIVIG 321
            +V+ +I++ +  +IG
Sbjct: 299 GIVNRLIVFIAPKIIG 314


>gi|261253738|ref|ZP_05946311.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio orientalis CIP 102891]
 gi|260937129|gb|EEX93118.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio orientalis CIP 102891]
          Length = 368

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/337 (35%), Positives = 182/337 (54%), Gaps = 29/337 (8%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +  D   MS A+  ++  +  T+ NP+V C+IV+   ++G G     G PHAEV A
Sbjct: 1   MPLFTPQDFTMMSRAIELAKGGIYTTAPNPNVGCVIVQGDEIVGEGFHYRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           L  AG+ A GATAYVTLEPCSHYGR+PPCA+ +I+  + +V+  ++DP+ +V+GRG+Q L
Sbjct: 61  LRMAGDRAVGATAYVTLEPCSHYGRTPPCAEGLIKAKVAKVICAMEDPNPKVAGRGIQML 120

Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI V+  ++E + +    A++ +       + LK+A S D    +A   S  IT   
Sbjct: 121 RDAGITVEVGLLEQQAESLNPAFIKQMKTGMPFVQLKMAASIDGQTALANGQSQWITSPQ 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN----GLQE-------HSPMRIILDPH 227
           ++  V   RA+S AIL    TV+ D+  L  R +     LQE         P+R+ILD +
Sbjct: 181 ARQDVQKYRAKSGAILSTSKTVIEDNASLNVRWDDLPLSLQEAYSQQELRQPVRVILDRN 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDD--PVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285
            +L+ D K++ T      IIV E  D  P+L       +  +I     DL    + L  +
Sbjct: 241 HQLTSDLKLMSTE--GERIIVAEGQDLEPIL------NDEQLI-----DLAATFSALAKQ 287

Query: 286 -GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
             +  L VE GA +A S I + LVD +ILY +  ++G
Sbjct: 288 HHINHLWVEAGATLASSLIKANLVDELILYLAPKIMG 324


>gi|257138273|ref|ZP_05586535.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
           E264]
          Length = 369

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/320 (35%), Positives = 171/320 (53%), Gaps = 11/320 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
           M  AL  +   +  T+ NP V C+IVKD +VIG G T   G  HAEVQAL++A   G + 
Sbjct: 1   MQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDARARGNDL 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           R AT YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L   GI V 
Sbjct: 61  RDATVYVTLEPCSHFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAMLRDAGIDVR 120

Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++  E       +++R    R  + +K A S D    +A   S  ITG  +++  H  
Sbjct: 121 CGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAARDDGHKW 180

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           RA++ AIL GIGTV  DDP+L  R  G+     P R+++D    + L +++++   L   
Sbjct: 181 RARACAILTGIGTVREDDPQLNVR--GVDTPRQPRRVLIDSRLDIPLTARLLEGGSLLIF 238

Query: 246 IIVTENDDPVLALAFRKKNINII-YCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
               +      A A R +   I+   + R   DL  +L  L  RG+  L VE G  +  S
Sbjct: 239 CGALDAQSEARAQALRARGAEIVPLANVRGKVDLPAMLAALGERGINELHVEAGHKLNGS 298

Query: 302 FINSRLVDSIILYRSQIVIG 321
            +  R VD +++Y +  ++G
Sbjct: 299 LLRERCVDELLVYLAPSLLG 318


>gi|76798747|ref|ZP_00780965.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
           18RS21]
 gi|76585902|gb|EAO62442.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
           18RS21]
          Length = 362

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/316 (35%), Positives = 179/316 (56%), Gaps = 7/316 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ +   +G  + NP V  +IVKD  +I +G     G  HAE QA++ A E+  G+
Sbjct: 1   MALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDISGS 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129
           T YVTLEPC H G+ PPC + +I+ GI++VVV   DP+  VSG+G+  L ++G+ V+  +
Sbjct: 61  TLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVEVGI 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +  E       ++     K+  + LK A++ D  I      S  I+   S+  V  LR +
Sbjct: 121 LREECDALNERFIFHMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKLRQK 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
             AI+VGI TVLAD+P LTCR+   +  + +RI+ D   K+ LDS ++K+A   P  I T
Sbjct: 181 CSAIMVGINTVLADNPRLTCRIP--KGEALVRIVCDSQLKIPLDSYLVKSAKTIPTWIAT 238

Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
            +D+       ++    +I    +    DLK L+TIL   G+ SLL+EGG+++  S + +
Sbjct: 239 CSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQEGIDSLLIEGGSSLHFSALKA 298

Query: 306 RLVDSIILYRSQIVIG 321
            +V+ +I++ +  +IG
Sbjct: 299 GIVNRLIVFIAPKIIG 314


>gi|323497966|ref|ZP_08102975.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           [Vibrio sinaloensis DSM 21326]
 gi|323317011|gb|EGA70013.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           [Vibrio sinaloensis DSM 21326]
          Length = 368

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/331 (34%), Positives = 178/331 (53%), Gaps = 24/331 (7%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           SS D + MS A+  ++  V  T+ NP+V C+I ++  V+G G     G PHAEV AL  A
Sbjct: 5   SSIDFQMMSRAIDLAKGGVYTTAPNPNVGCVITRNEEVVGEGFHYRAGEPHAEVHALRMA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE++ GATAYVTLEPCSHYGR+PPCA+ +I+  + +V+    DP+ +V+GRG++ L   G
Sbjct: 65  GEQSVGATAYVTLEPCSHYGRTPPCAEGLIKAKVAKVICASQDPNPQVAGRGIKMLRDAG 124

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V+  ++E E       ++ R      ++ LK+A S D    +A   S  IT   ++  
Sbjct: 125 IEVEVGLLEQEALALNPGFIKRMKTGLPYVQLKMAASLDGQTALANGQSQWITSPQARQD 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLS 231
           V   RA+S AIL    TV+ D+  L  R + L E             P R+ILD   KL+
Sbjct: 185 VQQWRARSGAILSTSKTVIEDNASLNVRWSELPESIQQRYSQTDLRQPTRVILDRQNKLT 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSL 290
            D K+  +      ++V+E+ +  ++L  +++          DL+  L  L  +  +  +
Sbjct: 245 PDLKLFHSP--GERLVVSEHGEVAMSLNEQQQ---------IDLEATLACLAQQHNINHV 293

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            VE GA +A S I  +LVD +ILY +  ++G
Sbjct: 294 WVEAGATLASSLIREQLVDELILYFAPKLMG 324


>gi|182417348|ref|ZP_02948682.1| riboflavin biosynthesis protein RibD [Clostridium butyricum 5521]
 gi|237668576|ref|ZP_04528560.1| riboflavin biosynthesis protein RibD [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182378778|gb|EDT76300.1| riboflavin biosynthesis protein RibD [Clostridium butyricum 5521]
 gi|237656924|gb|EEP54480.1| riboflavin biosynthesis protein RibD [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 360

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/324 (34%), Positives = 170/324 (52%), Gaps = 12/324 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M  AL  +   VG+ + NP V  +IVKD  VIG G     G  HAE  A++ A E
Sbjct: 1   MDEFYMKRALELAIKGVGMVNPNPMVGAVIVKDNKVIGEGFHEKYGHAHAERNAVKNAVE 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +  GAT YVTLEPC+HYG++PPC   +IE  +R+VV+ + DP+  V+G+ ++ L +  I 
Sbjct: 61  DIEGATVYVTLEPCAHYGKTPPCVDLLIEKKVRKVVIGMLDPNPLVAGKSIKKLKENNIE 120

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   + E E +     ++     K+  + +K  +S D  I  +G  S  IT   S+   H
Sbjct: 121 VKVGVKEKECRKLNEVFIKYITTKKPFVIMKAGISIDGKIATSGGESKWITSERSRLHSH 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS---PMRIILDPHFKLSLDSKIIKTAL 241
            LR +   I+VGI TVL+DDP LT R     EH    P+RII+D   K+  +SK+IK   
Sbjct: 181 ELRNRMSGIMVGINTVLSDDPSLTYR----GEHKGKDPLRIIIDSTLKVPFESKVIKYNN 236

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
              ++   EN D +      K  + +I    +    DL++++  L    + S+L+EGG  
Sbjct: 237 NNTIVACVENADLIKKEKLEKMGVKVIETKSKKGKVDLQEVVERLGKDKIDSILLEGGGT 296

Query: 298 VAHSFINSRLVDSIILYRSQIVIG 321
           +  S +   +VD +  Y +  +IG
Sbjct: 297 LNFSALKEGIVDKVRFYIAPKIIG 320


>gi|282866177|ref|ZP_06275224.1| riboflavin biosynthesis protein RibD [Streptomyces sp. ACTE]
 gi|282558961|gb|EFB64516.1| riboflavin biosynthesis protein RibD [Streptomyces sp. ACTE]
          Length = 366

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/332 (35%), Positives = 182/332 (54%), Gaps = 23/332 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++ D   M  A+  +   +G TS NP V C+++   G   G G     G PHAE+ AL E
Sbjct: 3   TTADITAMRRAIALAARGLGATSPNPVVGCVVLDAAGQPAGEGFHRRAGGPHAEIHALRE 62

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARG TAYVTLEPC+H GR+ PCAQ +++ GIRRVV  V DP+ + +G G   L  +
Sbjct: 63  AGERARGGTAYVTLEPCNHTGRTGPCAQALLDAGIRRVVYAVGDPNPQATG-GADTLRAE 121

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ V++ ++  E +    A+LT     R ++  K A + D  +  A   S  IT   S+ 
Sbjct: 122 GVQVEQGLLADEAETGNTAWLTSVRLGRPYVLWKYAATLDGRVAAADATSRWITSAESRA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDP-HFKLSLDSKIIKT 239
            VH LRA++DA++VG GT  ADDP+L  R ++G  +  P+R+++D     +   ++++  
Sbjct: 182 DVHRLRAEADAVVVGSGTARADDPQLGVRGIDGAVQ--PLRVVVDTGATAVKPGARVLDG 239

Query: 240 ALLAPVIIVTEND--------DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
           +  AP ++    D        D VL L        +      D+  LL  L  RGV S+L
Sbjct: 240 S--APTLVAVAEDADASHLPKDAVLRLPRAADGRGL------DVPALLAALHARGVRSVL 291

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           +EGG  +A SF+ +  VD+++ Y + +++G G
Sbjct: 292 LEGGPVLAGSFVAAGTVDTVVGYLAPVLLGAG 323


>gi|194016088|ref|ZP_03054703.1| riboflavin biosynthesis protein RibD [Bacillus pumilus ATCC 7061]
 gi|194012443|gb|EDW22010.1| riboflavin biosynthesis protein RibD [Bacillus pumilus ATCC 7061]
          Length = 361

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/360 (32%), Positives = 195/360 (54%), Gaps = 12/360 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++   G TS NP V  +IV+ G ++G G     G PHAE+ AL  AGE+
Sbjct: 4   DVFYMKLAIANAKAMKGQTSPNPLVGAVIVQQGEIVGMGAHMKAGEPHAEIHALHMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GA  YVTLEPCSH+G++ PC + II+ G++RVV+   DP+  V+G+G+  L Q GI V
Sbjct: 64  AEGAHLYVTLEPCSHHGKTGPCTEAIIKSGVKRVVIATQDPNPLVAGKGITVLKQAGIEV 123

Query: 127 DRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  +  +    L+      ++    ++ LK A+S D  I  A   S  ITG  ++ +V  
Sbjct: 124 DEGICKQEADRLNVPFFHFIQSDLPYVILKSAISLDGKIATAQLESKWITGTEARQEVQQ 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR ++DA++ G+ T++ DD  L  + +   +  P+R+ILD   ++ L +K + T   A  
Sbjct: 184 LRQEADAVITGVETIIQDDAGLIVKDSIASQ--PIRVILDSTLRIPLHAKCL-TDRRAET 240

Query: 246 IIVTE---NDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           II T    +      L  +  ++ +   + R D+  +L +L  R V S+LVE G  V+ S
Sbjct: 241 IICTSHMYDQKKYEQLIEKGHHVYVTSGEQRTDIHDVLRMLKERSVMSVLVEAGGNVSAS 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           F+ + LV+  ++Y + ++IG    P+  E   ++K    +R     +DV    +GK++ +
Sbjct: 301 FLEASLVNEAVIYMAPLLIGGKQAPTFFEGAGVKKLKEAIRP----ADVEYSMVGKDIKM 356


>gi|320661180|gb|EFX28611.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli O55:H7 str. USDA 5905]
          Length = 361

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 131/367 (35%), Positives = 188/367 (51%), Gaps = 28/367 (7%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+A+GA
Sbjct: 1   MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
           TAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V   +
Sbjct: 61  TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M SE +     +L R      +I LK+  S D    M    S  IT   ++  V  LRAQ
Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMVSGESQWITSPQARRDVQRLRAQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDSKIIK 238
           S AIL    TVLADDP LT R + L         Q H   P+RI++D   +++ +  I++
Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDVQTQALYPQHHLRQPVRIVIDSQNRVTPEHHIVQ 240

Query: 239 TALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
                      E+     + V  L   +   ++      DL  L+  L  + + S+ VE 
Sbjct: 241 QPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSIWVEA 294

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349
           G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      + G D
Sbjct: 295 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRHVGPD 353

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 354 VCLHLVG 360


>gi|260767835|ref|ZP_05876770.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio furnissii CIP 102972]
 gi|260617344|gb|EEX42528.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio furnissii CIP 102972]
          Length = 369

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/338 (34%), Positives = 176/338 (52%), Gaps = 24/338 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP  +SFD + MS A++ ++     T+ NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPTFTSFDYQMMSRAIKLAQRGRFTTAPNPNVGCVITQGESIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           L  AGE++ GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RV+  + DP+ +V+GRG+  L
Sbjct: 61  LRMAGEQSVGATAYVTLEPCSHYGRTPPCAEGLIKAGVARVICAMQDPNPQVAGRGIDML 120

Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            + GI V   ++E++      A++ R       + LK+A S D    +A   S  IT   
Sbjct: 121 REAGIEVQVGLLEADALALNPAFIKRMKTGMPWVQLKMAASLDGQTALANGRSQWITSPQ 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPH 227
           ++  V   RAQ+ A+L    TVLAD+  LT R   L  H            P+R ILD  
Sbjct: 181 ARQDVQAYRAQAGAVLSTSQTVLADNASLTVRWQDLPAHVQATYAEQHLRQPVRAILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-RG 286
            +L  +  +  T   + V+ V   D  V         +N        L+++L  L     
Sbjct: 241 HQLHRELALYATD--SAVLRVANQDADVCVALDEHGQLN--------LREVLGALAKHHN 290

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           +  + VE GA +A S +   LVD +++Y +  ++G  G
Sbjct: 291 INHIWVEAGATLAKSLLEQDLVDELVVYLAPKIMGSDG 328


>gi|93007294|ref|YP_581731.1| riboflavin biosynthesis protein RibD [Psychrobacter cryohalolentis
           K5]
 gi|92394972|gb|ABE76247.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Psychrobacter cryohalolentis K5]
          Length = 370

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/323 (36%), Positives = 175/323 (54%), Gaps = 28/323 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  A+  ++  +     NP+V C+IV+   V+G+G     G PHAEV AL++AG  
Sbjct: 31  DHYFMMLAIEQAKLGLYTARPNPAVGCVIVQAEEVVGQGFHPKAGQPHAEVFALKDAGIR 90

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GATAYVTLEPCSH GR+PPCA+ +IE G+ RVVV   DP+ +V+GRG++ L Q GI V
Sbjct: 91  TVGATAYVTLEPCSHTGRTPPCAKALIESGVIRVVVAGLDPNPQVAGRGVKLLEQAGIAV 150

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +++++ +     +L     +  ++ LKIA S D    MA   S  ITG  ++  V  
Sbjct: 151 SVGVLKTQAEALNKGFLKAMRNQMPYVRLKIATSLDGRTAMATGESKWITGPAAREDVQK 210

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL-----QEHSPMRIILDPHFKLSLDSKIIKTA 240
           LRAQS AI+ G  TV+ D+P+L  R N L     +   P  +ILD   +L  D +     
Sbjct: 211 LRAQSGAIITGSETVIVDNPQLNVRSNQLGIAIEEVPHPKVVILDRRGRLKHDLQSDYQL 270

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVA 299
              P                     + +Y    +L++LL +LV       +L+E GA+VA
Sbjct: 271 CRRP---------------------DTLYWREDNLRELLKVLVTEYQCYDVLIEAGASVA 309

Query: 300 HSFINSRLVDSIILYRSQIVIGE 322
            SF+  +LVD +I+Y++  ++G+
Sbjct: 310 GSFLQQQLVDELIVYQAPCLLGQ 332


>gi|238752768|ref|ZP_04614237.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia rohdei
           ATCC 43380]
 gi|238709026|gb|EEQ01275.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia rohdei
           ATCC 43380]
          Length = 369

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/327 (36%), Positives = 177/327 (54%), Gaps = 14/327 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     TS NP+V C++V+DG ++G G     G PHAEV AL  AGE+
Sbjct: 4   DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHQRAGEPHAEVHALRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATA+VTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q GI V
Sbjct: 64  AQGATAFVTLEPCSHHGRTPPCADALVAAGVVRVVAAMQDPNPEVAGRGLYKLKQAGIDV 123

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 124 NHGLMLAEAEAANLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
            RA+S AIL    TVLADDP LT R   L   +           P+RIILD H +++ + 
Sbjct: 184 FRAESSAILSTSATVLADDPALTVRWQALDAETQALYPEDKLRQPIRIILDSHNRVTPEH 243

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           K+ +     P  +     D     A  ++ +   + +  DL  L+  L  R + S+ VE 
Sbjct: 244 KVTQQD--GPCWLARVEADTQPWPANVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321
           G  +A + + + +VD +ILY +  ++G
Sbjct: 302 GPQLAGALLQAGVVDELILYIAPKLLG 328


>gi|228475866|ref|ZP_04060576.1| riboflavin biosynthesis protein RibD [Staphylococcus hominis SK119]
 gi|314936136|ref|ZP_07843483.1| riboflavin biosynthesis protein RibD [Staphylococcus hominis subsp.
           hominis C80]
 gi|228270021|gb|EEK11491.1| riboflavin biosynthesis protein RibD [Staphylococcus hominis SK119]
 gi|313654755|gb|EFS18500.1| riboflavin biosynthesis protein RibD [Staphylococcus hominis subsp.
           hominis C80]
          Length = 347

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 109/314 (34%), Positives = 164/314 (52%), Gaps = 9/314 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           + FM  A++ ++   G T  NP V  ++VKDG ++G G     G  HAEVQAL+ A ++A
Sbjct: 2   SEFMKYAIQLAQMVEGQTGVNPPVGSVVVKDGRIVGLGAHLKQGEKHAEVQALDMAQDKA 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           +G T Y++LEPC+HYG +PPC   IIE G+ +V+  V   D  +S  G   L + GI V+
Sbjct: 62  KGGTIYISLEPCTHYGSTPPCVNKIIEHGLSKVIYAV--KDTTLSSEGDIILEKAGIEVE 119

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
                E       +   +  K   IT+K++ S D         S  IT    K  V+ LR
Sbjct: 120 YQYSEEAFALYEDFFKAKQHKIPEITVKVSTSLDGKQATDSGQSQWITNKAVKQDVYRLR 179

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
              DA+L G GT+ AD+P+ T R+   +   P+RIIL    ++    +I     L+ + I
Sbjct: 180 HTHDAVLTGNGTIEADNPQYTTRIQ--EGKHPIRIILSKRGQIDYSKQIFHDQ-LSEIWI 236

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            TEN +    L     +I IIY +  +LK +L+ +  RGV  LLVE G  +   F+ S  
Sbjct: 237 YTENHE----LKSPSHHIKIIYLETCNLKSILSDIYQRGVGRLLVEAGPQITSEFLQSNY 292

Query: 308 VDSIILYRSQIVIG 321
           +D +I+Y +  +IG
Sbjct: 293 LDHLIIYYAPKIIG 306


>gi|149005931|ref|ZP_01829660.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
           SP18-BS74]
 gi|168483819|ref|ZP_02708771.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           CDC1873-00]
 gi|225855949|ref|YP_002737460.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           P1031]
 gi|307126404|ref|YP_003878435.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           670-6B]
 gi|147762287|gb|EDK69248.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
           SP18-BS74]
 gi|172042835|gb|EDT50881.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           CDC1873-00]
 gi|225725798|gb|ACO21650.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           P1031]
 gi|306483466|gb|ADM90335.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           670-6B]
 gi|332076629|gb|EGI87091.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           GA17545]
 gi|332203340|gb|EGJ17407.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           GA47368]
          Length = 366

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 109/320 (34%), Positives = 174/320 (54%), Gaps = 7/320 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G PHAE  AL+   + 
Sbjct: 3   DSKYMKLAIKLAQKGAGYVNPNPMVGAIIVKDNHIIGQGYHEFFGGPHAERNALKNCRKS 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + V
Sbjct: 63  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A+S D  I      S  IT   ++  VH 
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIG 321
            +  ++VD + +Y +  + G
Sbjct: 301 ALEQQIVDELKIYIAPKIFG 320


>gi|223043509|ref|ZP_03613554.1| riboflavin biosynthesis protein RibD [Staphylococcus capitis SK14]
 gi|222442997|gb|EEE49097.1| riboflavin biosynthesis protein RibD [Staphylococcus capitis SK14]
          Length = 349

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/317 (35%), Positives = 168/317 (52%), Gaps = 7/317 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           +RFM+ A++ ++   G T  NP V  ++VKDG ++G G     G  HAEVQAL+ AGE+A
Sbjct: 2   SRFMNYAIQLAKMVDGQTGINPPVGSVVVKDGRIVGLGAHLKKGDKHAEVQALDMAGEDA 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           + AT YV+LEPC+H+G +PPC   IIE GIR+V+  V   D  ++ +G + L + GI V+
Sbjct: 62  KDATIYVSLEPCTHHGSTPPCVNKIIEFGIRKVIYAV--KDTTLASKGDEILKEAGIEVE 119

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
                        + T +      +T+K++ S D         S  IT    K  V+ LR
Sbjct: 120 FQFNENAAELYKDFFTAKRNSIPELTVKVSSSLDGKQATDSDESKWITNKEVKEDVYKLR 179

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DA+L G  T+ ADDP  T R+   +   P+R+IL    ++  + ++      +P+ I
Sbjct: 180 HEHDAVLTGRKTIDADDPLYTTRVQDGKH--PIRVILSKSGQIDFEQQLFADT-ASPIWI 236

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            TEN++  L      K+I II  +  D   +L  L  RG+  LLVE G  V   F+ S  
Sbjct: 237 YTENEN--LKNQSNDKHIEIICLEKCDSTAILKDLYQRGIGKLLVEAGPNVTSQFLQSHH 294

Query: 308 VDSIILYRSQIVIGEGG 324
           +D +ILY +  +IG  G
Sbjct: 295 LDELILYLAPKLIGGSG 311


>gi|220909715|ref|YP_002485026.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7425]
 gi|219866326|gb|ACL46665.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7425]
          Length = 392

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/325 (34%), Positives = 170/325 (52%), Gaps = 3/325 (0%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D   M   L  +R   G T+ NP V C+IVKDG ++G G     G PHAEV AL  AG+
Sbjct: 24  LDQIMMQRCLTLARQAQGQTAPNPLVGCVIVKDGEIVGEGFHPKAGEPHAEVFALRAAGD 83

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            A GAT YV LEPC+HYGR+PPC++ +++ GI RVVV + DPD RVSG G+  L   GI 
Sbjct: 84  RAVGATLYVNLEPCNHYGRTPPCSEAVVKAGIGRVVVGMVDPDPRVSGGGIARLRAAGIE 143

Query: 126 VDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   +E    +    A++ R    R    LK A++ D  I  A   S  IT   ++ +VH
Sbjct: 144 VTVGVEEMACRDLNEAFIHRITYHRPFGILKYAMTLDGKIATAKGHSAWITDAAARTEVH 203

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LRA  D ++VG  TV  D+P+LT  L+ ++  +P+RI++     L   + + +T   A 
Sbjct: 204 RLRAGCDGVIVGGNTVRRDNPQLT--LHEVEGRNPLRIVMSRSLDLPSQAHLWQTQAAAT 261

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           +++        +  A + + + ++  D      ++  L  RG+ ++L E G  +A   I 
Sbjct: 262 LVLTQPGHSLQIKSALQAQGVEVVVLDVLTPATVMDYLYDRGLLAVLWECGGRLAARAIA 321

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPL 329
              V  +  + +  +IG    PSP+
Sbjct: 322 EGAVQKVWAFIAPKIIGGDQAPSPV 346


>gi|257453179|ref|ZP_05618478.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium
           sp. 3_1_5R]
 gi|317059713|ref|ZP_07924198.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium sp. 3_1_5R]
 gi|313685389|gb|EFS22224.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium sp. 3_1_5R]
          Length = 359

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/326 (34%), Positives = 179/326 (54%), Gaps = 18/326 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  ++   G  + NP V  ++VK+G +IG+G     G PHAEV AL+EAGEE
Sbjct: 3   DLEYMHLALELAKHGEGRVNPNPLVGAVVVKNGKIIGKGYHHEYGGPHAEVFALQEAGEE 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YVTLEPCSHYG++PPCA+ II+ GI+R V+ + DP+  V+G+G+  +   GI V
Sbjct: 63  AKGATIYVTLEPCSHYGKTPPCAKKIIDSGIKRCVISMGDPNPLVAGKGISMMRDAGIEV 122

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  + E+E +     +L     K   + LK  ++ D  +      S  IT  I++ +V  
Sbjct: 123 EIGLCETEARALNRVFLKYISTKLPFLFLKCGITLDGKLATRNFQSKWITNEIAREKVQK 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
           LR +   I+VG+ TV+ D+P L  R+ NG     P RII+DP+ ++ L SK++       
Sbjct: 183 LRNKYTGIMVGVHTVIEDNPSLDARIENG---RDPYRIIVDPYLEIPLSSKLLHRHDKKT 239

Query: 245 VIIVTENDDPVLALAFRKKN------INIIYCDCRDLK-KLLTILVGR-GVTSLLVEGGA 296
           VII +      L    +KK          I+ + R      + I +G+ G+ S+L+EGG 
Sbjct: 240 VIITS-----FLEKETQKKKELDDLETRFIFLEDRIFSWPQMLIEIGKLGIDSVLLEGGG 294

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGE 322
            +  S     ++D   ++ +  ++G+
Sbjct: 295 QLISSAFREDVIDGGEIFIAPKILGD 320


>gi|113475344|ref|YP_721405.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Trichodesmium erythraeum IMS101]
 gi|110166392|gb|ABG50932.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Trichodesmium erythraeum IMS101]
          Length = 374

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/327 (33%), Positives = 175/327 (53%), Gaps = 3/327 (0%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           +  D   M+  L  +R  +G T+ NP V C+I+K+G +IG G     G PHAEV AL EA
Sbjct: 11  NQLDPLIMAHCLELARRALGNTAPNPLVGCVIIKNGQIIGEGFHPGAGYPHAEVFALTEA 70

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE+ARGATAYV LEPC+HYGR+PPC   +I  G+ RVV+ + DP+  V+G G+  L   G
Sbjct: 71  GEKARGATAYVNLEPCNHYGRTPPCTDALIAAGVARVVIGMIDPNPLVAGAGVAKLQDAG 130

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +V  ++E+E +    A++ R +       LK A++ D  I      S  +T   ++++
Sbjct: 131 IEVVVGVLEAECRELNEAFIHRMLYHCPFGILKYAMTLDGKIATTTGHSAWVTSQEARSE 190

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LRA SDA+++G  TV  D+P LT R    Q ++P+R+++     L  ++ +   +  
Sbjct: 191 VHKLRAISDAVIIGGNTVRRDNPFLTSR--STQANNPLRVVMSRSLDLPTEANLWDVSEA 248

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             ++    + +       R+K + ++         +++ L  RG  S+L E G  +A   
Sbjct: 249 QTLVFTEIDSNQEFKEYLRQKGVEVLETSTLTPAVVMSNLYDRGFLSVLWECGGTLAARA 308

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPL 329
           +    V  I  + +  +IG    P+P+
Sbjct: 309 MADGAVQKIWAFIAPKIIGGEIAPTPV 335


>gi|170741291|ref|YP_001769946.1| riboflavin biosynthesis protein RibD [Methylobacterium sp. 4-46]
 gi|168195565|gb|ACA17512.1| riboflavin biosynthesis protein RibD [Methylobacterium sp. 4-46]
          Length = 398

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 143/364 (39%), Positives = 194/364 (53%), Gaps = 14/364 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI----VIGRGVTAYGGCPHAEVQA 59
           +S D R+M  AL   R H+G T  NPSV  ++V        ++ +GVT  GG PHAE  A
Sbjct: 20  ASLDRRYMRLALALGRRHLGRTWPNPSVGAVLVAGPPGAERILAQGVTQPGGRPHAERVA 79

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           L EAGE ARGAT YVTLEPCSH+GR+ PCA  ++  G+ RVV  ++DPD RV+GRG   L
Sbjct: 80  LAEAGEAARGATLYVTLEPCSHHGRTSPCADAVLAAGVARVVSAMNDPDPRVAGRGHGRL 139

Query: 120 SQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              G+ V     +E     HA ++ R    R  + LK+A + D      G G + ITG +
Sbjct: 140 RAGGVAVTVGPCAEEAARDHAGHVMRVTTGRPALCLKLARTADGFA-AGGAGRLLITGAL 198

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           +  +VH LRA SDAILVGIGT LADDP LT RL GL + SP+ ++LDP  +L   +++++
Sbjct: 199 ANAEVHRLRAHSDAILVGIGTALADDPALTVRLPGLGDRSPLPVVLDPQLQLPPGARLLR 258

Query: 239 TALLAPVIIVTENDDPVLA-LAFRKKNINIIYC----DCR-DLKKLLTILVGRGVTSLLV 292
               A  +I+     P  A  A R+    ++      D R DL   L  L  RG+T +  
Sbjct: 259 PGGRAQTLILAGAAAPPAAERALREAGAEVLRLPAGPDGRPDLAASLRALGARGITRVFC 318

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS--PLEEGYLEKNFMCVRRDYFGSDV 350
           EGG  +A +   + LVDS +L      +G+ G P+  P     L      V     G D 
Sbjct: 319 EGGPTLADALAAADLVDSCLLLTGAAPLGQPGKPAIGPALAARLAGGLRRVAERPLGPDR 378

Query: 351 CLEY 354
              Y
Sbjct: 379 LTTY 382


>gi|167816999|ref|ZP_02448679.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 91]
          Length = 369

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/320 (35%), Positives = 171/320 (53%), Gaps = 11/320 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
           M  AL  +   +  T+ NP V C+IVKD +VIG G T   G  HAEVQAL++A   G + 
Sbjct: 1   MQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDARARGNDL 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           R AT YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L   GI V 
Sbjct: 61  RDATVYVTLEPCSHFGRTPPCAHTLIDARVGKVVAAMEDPNPQVSGRGLAMLRDAGIDVR 120

Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++  E       +++R    R  + +K A S D    +A   S  ITG  +++  H  
Sbjct: 121 CGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAARDDGHKW 180

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           RA++ AIL GIGTV  DDP+L  R  G+     P R+++D    + L +++++   L   
Sbjct: 181 RARACAILTGIGTVREDDPQLNVR--GVDTPRQPRRVLIDSRLDIPLAARLLEGGSLLVF 238

Query: 246 IIVTENDDPVLALAFRKKNINII-YCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
               +      A A R +   I+   + R   DL  +L  L  RG+  L VE G  +  S
Sbjct: 239 CGALDAQSEPRADALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEAGHKLNGS 298

Query: 302 FINSRLVDSIILYRSQIVIG 321
            +  R VD +++Y +  ++G
Sbjct: 299 LLRERCVDELLVYLAPSLLG 318


>gi|310657724|ref|YP_003935445.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Clostridium sticklandii DSM 519]
 gi|308824502|emb|CBH20540.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Clostridium sticklandii]
          Length = 382

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/333 (35%), Positives = 174/333 (52%), Gaps = 14/333 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D +FM  AL  +    G  + NP V  +IVKDG VIG G     G  HAE++A+  A E+
Sbjct: 21  DEKFMKLALSLAEKGRGYVNPNPLVGAVIVKDGKVIGEGYHTAFGKSHAEIEAINSATED 80

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-- 124
            + AT YVTLEPC H G++PPC + II+  + RVVV   DP+  VSG G++ L Q  I  
Sbjct: 81  IKSATMYVTLEPCCHQGKTPPCTEAIIKNQLARVVVATTDPNPLVSGSGIEKLKQSNIEI 140

Query: 125 ---IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
              +++ M + + ++F+H Y+T  +       LK A+S D  I      S  IT   S+ 
Sbjct: 141 TVGVLEEMAKIQNEVFIH-YMTTNL---PFTILKYAMSLDGKIACHTGDSKWITSEKSRT 196

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH LR+   A++ GIGT+L+DD  L  RL   +   P RI++D   ++SLD+KII    
Sbjct: 197 DVHRLRSSVSAVVTGIGTILSDDASLNVRLIDSKGREPHRIVVDSAARISLDAKIINLDS 256

Query: 242 LAPVII-VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
            +   I VTE                II    +    DL++L   L   G+ S+L+E G 
Sbjct: 257 KSDTYIAVTEAASDGKLRKLEDYGAKIIMTKSKDGKVDLEELWKELGFLGMDSILIEAGE 316

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
            ++ + + ++LV+ I  Y +  +IG     SP+
Sbjct: 317 QLSAALLEAKLVNKIRAYIAPKIIGGTNAKSPI 349


>gi|302387516|ref|YP_003823338.1| riboflavin biosynthesis protein RibD [Clostridium saccharolyticum
           WM1]
 gi|302198144|gb|ADL05715.1| riboflavin biosynthesis protein RibD [Clostridium saccharolyticum
           WM1]
          Length = 368

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/359 (34%), Positives = 191/359 (53%), Gaps = 29/359 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+R ++   GL + NP V  ++VK+G +IG G     G  HAE  A+    E 
Sbjct: 3   DMEYMGMAVRLAQKGCGLVNPNPMVGAVLVKEGRIIGEGYYERYGALHAERNAILNCRES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             G T YVTLEPC H+G++PPC + I++ GIRRVV+   DP+  V G+G++ L ++GI +
Sbjct: 63  PEGTTLYVTLEPCCHHGKTPPCTEAILQSGIRRVVIGSHDPNPLVKGKGIKQLREQGIEV 122

Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           V+ +++ E     ++F H   T     + ++ +K A++ D         S  ITG  ++ 
Sbjct: 123 VEDVLKEECDKLNEVFFHFIQT----GKPYVVMKYAMTMDGKTAAYTGASKWITGEDARR 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
           +VH  R +  A++VGIGTVLADDP LTCRL NG    +P+RII D      LDS+I+ TA
Sbjct: 179 RVHEDRRRYSAVMVGIGTVLADDPLLTCRLENG---RNPLRIICDTQLHTPLDSRIVLTA 235

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
              P +I T + +      + K    I+    +    DL +L+  L    + S+L+EGG 
Sbjct: 236 SKVPTVIATSSMEREAHQPYIKAGCRILPVSQKDGHLDLARLMAKLGEEKIDSVLLEGGG 295

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG---------GIPSPLEEGYLEKN--FMCVRRD 344
            +  S + + +V+ +  Y +  ++G           G+PSP E GY   N    C+  D
Sbjct: 296 ILNWSALQAGIVNKVQAYLAPKLLGGAAGKTPVAGIGVPSP-EAGYFLTNSTITCLGED 353


>gi|240949069|ref|ZP_04753420.1| riboflavin biosynthesis protein [Actinobacillus minor NM305]
 gi|240296542|gb|EER47167.1| riboflavin biosynthesis protein [Actinobacillus minor NM305]
          Length = 355

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/328 (35%), Positives = 178/328 (54%), Gaps = 15/328 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ A+  +    G T+ NP V C+IVK+  ++  G     G  HAE  A+  +  + RGA
Sbjct: 1   MARAIALAEKARGWTNPNPLVGCVIVKNDEILAEGYHERIGGWHAERNAILNSNADLRGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPC H+GR+PPC+  +IE GI +V +   DP+  VSG+G++ L   GI +V   
Sbjct: 61  TAYVTLEPCCHHGRTPPCSDLLIERGISKVFIGSRDPNPLVSGKGVKQLQAAGIEVVTDF 120

Query: 130 MESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           M  E      IF H   T    KR ++ LK A++ D  I  +   S  ITG +++ +V  
Sbjct: 121 MREECDRLNPIFFHYIQT----KRPYVLLKYAMTADGKIATSSGESKWITGELARAKVQE 176

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R Q  AI+VGI TVLAD+P L  R+   ++  P+RI+ D   +  LD ++++TA     
Sbjct: 177 TRHQYSAIMVGIETVLADNPMLNSRMPNAKQ--PVRIVCDSSLRTPLDCQLVQTAKEYRT 234

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           II T +DD      F+   + I+ C  +    DL+ LL  L    + SLL+EGG+++  S
Sbjct: 235 IIATVSDDLQKIAQFQPLGVEILVCKVKDKRVDLQDLLQKLGEMQIDSLLLEGGSSLNFS 294

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPL 329
            +   +V+ +  Y +  ++G     +P+
Sbjct: 295 ALQVGIVNRVHCYIAPKLVGGATAKTPI 322


>gi|149174623|ref|ZP_01853249.1| riboflavin biosynthesis protein RibD [Planctomyces maris DSM 8797]
 gi|148846733|gb|EDL61070.1| riboflavin biosynthesis protein RibD [Planctomyces maris DSM 8797]
          Length = 377

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 187/347 (53%), Gaps = 15/347 (4%)

Query: 2   PVSSFDA--RFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCPHAEVQ 58
           P+  F +    M  AL  +R   G    NP+V  +IV   + +IG G     G PHAE+ 
Sbjct: 3   PIRVFSSPEEVMHRALELARRGTGSVEPNPAVGSIIVDHSLKLIGEGYHQQCGGPHAEIH 62

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           AL  AGE+++G T YVTLEPC H G++ PC+Q +I  GI++VV+ + DP   V G G++ 
Sbjct: 63  ALNMAGEQSQGKTIYVTLEPCCHQGKTGPCSQALIRAGIKKVVIAMRDPAPHVDGGGIEE 122

Query: 119 LSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L Q GI V+  ++ESE +  +  ++ R  +    I  K A++ D  I      S  I+  
Sbjct: 123 LKQAGIEVEVGLLESEAQALVRPFVKRVTQGLPWIHAKWAMTLDGKIATRTGHSQWISNP 182

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            S+ +VH LR + DAI+VG  T  ADDP LT R  G  +  P RI++D   +LS+ S+++
Sbjct: 183 RSRERVHELRGRMDAIMVGQRTATADDPLLTARPPG--KRIPARIVIDSQARLSVQSQLV 240

Query: 238 KTALLAPVIIVTE-NDDPVLALAFRKKNINII-YCDCR-------DLKKLLTILVGRGVT 288
           +T   APVI+V   +      L   +  + ++ + +C        +L+  +  L  R +T
Sbjct: 241 QTVAEAPVIVVAHPSASQKKILQLEQAGVEVLQFSNCTSENESQPNLRLCMQELARRDMT 300

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
           ++LVEGG ++  S  + RL+D + ++ +  +IG     +P+    LE
Sbjct: 301 NILVEGGGSLLGSCFDQRLIDEVHVFIAPKIIGGAEAVTPIAGKGLE 347


>gi|91202314|emb|CAJ75374.1| strongly similar to riboflavin biosynthesis protein RibD
           [Candidatus Kuenenia stuttgartiensis]
          Length = 367

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 135/367 (36%), Positives = 196/367 (53%), Gaps = 18/367 (4%)

Query: 1   MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP +   D  +M+ AL  +    G+   NP V  +IVK+  ++G+G     G  HAE+ A
Sbjct: 1   MPLMKEHDEEYMTLALELAEKGRGMVEPNPMVGAVIVKNNEIVGKGYHKNYGGAHAEIHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + E G   +GAT YVT+EPC+HYG++ PCA  II  GI +VV    DP+   SG+G++ L
Sbjct: 61  INEGGVNCKGATLYVTMEPCAHYGKTAPCAAAIILAGIAKVVTTCVDPNPVTSGKGVKQL 120

Query: 120 SQKGIIVDRM--MESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITG 176
              GI V RM  ME + K  L+A   + ++K   +I +K A+S D  I      S  IT 
Sbjct: 121 QAAGITV-RMGVMEDQAK-KLNAPFFKLIQKGMPYIIVKWAMSIDGKIATVTGDSKWITS 178

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
             S+  VH LR+Q D ++VGI TVL DDP LTCR NG +  +P RII+D    L L S +
Sbjct: 179 EESRRYVHTLRSQVDGVMVGINTVLKDDPLLTCRFNGGR--NPKRIIIDSRASLPLTSAL 236

Query: 237 IKTALLAPVIIVTENDDPVLALA-FRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291
           I+T   + +II    + P   +   R+    +I      D  DLK+L   L    +T+++
Sbjct: 237 IRTVQQSEIIIAVSKNAPQKKVEILRQSGCRVIETNGDYDHVDLKELFLKLGSMRLTNIM 296

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYF 346
           VEGG+ +  S +  RL D II++ + I+IG  G  SP+    +E          VR   F
Sbjct: 297 VEGGSKIITSLLKERLADKIIVFIAPIIIGGCGDTSPVLGKGVENVCDALKIREVRHYRF 356

Query: 347 GSDVCLE 353
             D+ +E
Sbjct: 357 SDDIVVE 363


>gi|154686573|ref|YP_001421734.1| hypothetical protein RBAM_021420 [Bacillus amyloliquefaciens FZB42]
 gi|154352424|gb|ABS74503.1| RibD [Bacillus amyloliquefaciens FZB42]
          Length = 371

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/329 (35%), Positives = 172/329 (52%), Gaps = 20/329 (6%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M+ A+  +R   G T +NP V  ++VK+G ++G G     G  HAEV A+  AG  A+G
Sbjct: 5   YMNTAIELARRGEGQTQSNPLVGAVVVKNGQIVGMGAHLQYGEAHAEVHAIHMAGRHAKG 64

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI----- 124
           A  YVTLEPCSHYG++PPCA+ II+ GI+RV + V DP+  V+G+G+  L   GI     
Sbjct: 65  ADLYVTLEPCSHYGKTPPCAELIIKSGIKRVFIAVKDPNPLVAGKGIGMLEAAGIEVKTG 124

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           ++ +  E   K+FLH   T       ++TLK A S D         S  IT   ++    
Sbjct: 125 LLRQQAEELNKMFLHFMRT----GLPYVTLKAAASLDGKTATETGDSKWITSEAARLDAQ 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             R    +ILVG GTV AD+P LTCRL    +  P+R+ILD    +   + ++ T   AP
Sbjct: 181 QYRKSHQSILVGAGTVKADNPSLTCRLPDAVKQ-PVRVILDTKLTIPETANVL-TDGAAP 238

Query: 245 VIIVT------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
             I T      +  D + AL  +   +  +  D   + ++L+IL   G+ S+ VEGGA+V
Sbjct: 239 TWIFTAKGADVQKKDRLTALGIK---VIPLETDRIHVPEVLSILAENGIMSVYVEGGASV 295

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS 327
             SF+       +  Y +  +IG    PS
Sbjct: 296 HGSFVKEDCFQELHFYFAPKLIGGTLAPS 324


>gi|119502840|ref|ZP_01624925.1| Riboflavin biosynthesis protein RibD [marine gamma proteobacterium
           HTCC2080]
 gi|119461186|gb|EAW42276.1| Riboflavin biosynthesis protein RibD [marine gamma proteobacterium
           HTCC2080]
          Length = 359

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/327 (35%), Positives = 177/327 (54%), Gaps = 16/327 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  +R      + NP V C+IV D  ++G+G T   G  HAE+ AL  A    +GA
Sbjct: 1   MEQALAEARKGRFWATPNPHVGCVIVSDNKILGKGFTQPVGGAHAEIMALG-ACASPQGA 59

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           TAYVTLEPC+H GR+ PC + +I  GI RVV  ++DP+  VSG+G   L   GI V + +
Sbjct: 60  TAYVTLEPCAHQGRTGPCVEALISAGIGRVVGALEDPNPSVSGKGYDRLRAAGIAVTQGV 119

Query: 131 ESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            SE  ++ L  +L R       + LK+A S D    MA   S  ITG +++  V   RA 
Sbjct: 120 YSEAARVELAGFLLRMERGWGRVRLKLACSLDGRTAMASGESQWITGALARQDVQRQRAA 179

Query: 190 SDAILVGIGTVLADDPELTCRLN--GLQ--------EHSPMRIILDPHFKLSLDSKIIKT 239
           S  I+ GIGTVLADD  LT R +  GL+           P R++LD + +   +++++ +
Sbjct: 180 SSVIITGIGTVLADDCSLTVRSDELGLRGEELTRALHRPPTRVVLDSNARTPGEARVLSS 239

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
              AP ++VT N+  V A A  K     +     DL  +L  L  +G   +L+E G ++A
Sbjct: 240 N--APTLVVTANEKQVPAGALHK--TAPVTEAGLDLGDVLESLGSQGANEILIESGPSLA 295

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP 326
            +F+ + LVD +++Y++ +++G    P
Sbjct: 296 AAFLKADLVDELLIYQAPVLLGSSARP 322


>gi|87200870|ref|YP_498127.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87136551|gb|ABD27293.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 323

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 97/222 (43%), Positives = 133/222 (59%), Gaps = 1/222 (0%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D R++ AA         L+  NP+V  +IV DG+V+GRG T  GG PHAE  AL  A
Sbjct: 3   AADDLRWLDAAASLGARGRPLSRPNPAVGAVIVNDGVVVGRGWTQAGGRPHAEAGALMAA 62

Query: 64  GEEARGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           G+ A+GAT YVTLEPC+H   R P C   +++ G+ RVV+ ++DPD R +G G+  L   
Sbjct: 63  GDAAQGATLYVTLEPCAHASERGPSCTSLVLKSGLARVVIGIEDPDPRTAGGGIAALRSA 122

Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           GI  D +  +  +  L  YL R    R H+TLK+A S D  I +A   S  ITG  ++  
Sbjct: 123 GIAADVVPSAAARASLVGYLVRTATGRPHVTLKLATSLDGRIALADGTSKWITGPEARAH 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIIL 224
            H+ RA++DAILVG GT+ AD P L  RL GL+  SP R++L
Sbjct: 183 CHVERARADAILVGGGTLRADAPRLDVRLPGLEARSPKRMVL 224


>gi|269962351|ref|ZP_06176701.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
           harveyi 1DA3]
 gi|269832847|gb|EEZ86956.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
           harveyi 1DA3]
          Length = 374

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/331 (35%), Positives = 174/331 (52%), Gaps = 24/331 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D   MS AL+ ++  +  T+ NP+V C+IV+DG ++G G     G PHAEV A+  AG++
Sbjct: 14  DFEMMSRALKLAKRGIYTTAPNPNVGCVIVRDGEIVGEGHHHRAGEPHAEVHAMRMAGDK 73

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GATAYVTLEPCSHYGR+PPCA+ +I+  + RVV  ++DP+ +V+GRG Q L   G+ V
Sbjct: 74  AEGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMEDPNPKVAGRGFQMLRDAGVEV 133

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E       ++        ++ LK+A S D    ++   S  IT   ++  V  
Sbjct: 134 QVGLLENEAIELNKGFIKFMQTGMPYVQLKMAASLDGQSALSNGQSQWITSPKARQDVQR 193

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL----NGLQEHSPM-------RIILDPHFKLSLDS 234
            RA S  IL    TV+ D+  L  R     N ++ H P        R+ILD   +LS D 
Sbjct: 194 YRALSGGILSTSKTVIDDNASLNVRWDDLPNSVKAHYPQDEVRQPPRVILDRQSQLSDDL 253

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL-TILVGRGVTSLLVE 293
           K+  T      IIV++  D    L    KN  +      DL   L  +  G  +  L VE
Sbjct: 254 KLFNTD--GERIIVSQGGDIAPEL---DKNGQV------DLAATLQAVASGTHINHLWVE 302

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            GA +A S I + LVD +I+Y +  ++G  G
Sbjct: 303 AGATLASSLIKANLVDELIVYLAPKLMGSDG 333


>gi|225028184|ref|ZP_03717376.1| hypothetical protein EUBHAL_02456 [Eubacterium hallii DSM 3353]
 gi|224954496|gb|EEG35705.1| hypothetical protein EUBHAL_02456 [Eubacterium hallii DSM 3353]
          Length = 411

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/405 (30%), Positives = 192/405 (47%), Gaps = 59/405 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           + ++M  A+  ++   G  + NP V  +IVKDG +IG G     G  HAE  A+  A   
Sbjct: 3   EEKYMRRAIELAKKGSGHVNPNPLVGAVIVKDGEIIGEGYHECYGQLHAERNAIANARKR 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G    G+T YVTLEPC HYG++PPC + IIE  I RVVV  DDP+  VSG+G + L +KG
Sbjct: 63  GNNIEGSTIYVTLEPCCHYGKTPPCTEAIIEEKIARVVVGSDDPNPLVSGKGFKLLREKG 122

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I ++   ++ E     H +         ++ +K A++ D  I      S  +TG  S+  
Sbjct: 123 IEVIPHFLKEECDAMNHVFFHYISTGTPYVAMKYAMTMDGKIACYTGDSKWVTGEESRAH 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           V  LR     I+ GIGTVLADDP L+CR+ G ++  P+RII D H ++ +DS++++TA  
Sbjct: 183 VQTLRNHYKGIMAGIGTVLADDPMLSCRIEGGRD--PVRIIADSHLRIPMDSQLVRTAKQ 240

Query: 243 APVIIVTEND-DPVLALAFRKKNINII--------------------YCD---------- 271
            P+I+    D D   A+   +K + ++                    Y D          
Sbjct: 241 QPLIVACLPDADETKAVQLEEKGVEVLRIPGIAVNDFSGSSSDSVLKYKDRLLADNLADN 300

Query: 272 --CRD---------------LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
              R+               L  L+  L  R +  +L+EGG  +  S + + +V  +  Y
Sbjct: 301 NISREVDSDIIEEKQKEVISLPVLMKELGSRKIDGILLEGGGQLNESALQAGIVQRVYCY 360

Query: 315 RSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354
            +  + G     +P+E   L K     +F  +    FG D+ LEY
Sbjct: 361 IAPKIFGGAQAKTPVEGQGLAKAADAWHFTRIGMQEFGQDILLEY 405


>gi|77361290|ref|YP_340865.1| riboflavin biosynthesis protein [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876201|emb|CAI87423.1| Riboflavin biosynthesis protein [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 382

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/328 (33%), Positives = 175/328 (53%), Gaps = 12/328 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           + +D  +M+ A+  ++     T+ NP+V C++VK+  ++G G     G  HAEV AL  A
Sbjct: 8   NQYDEMYMARAIELAKKGRFTTTPNPNVGCVLVKNNEIVGEGFHQLAGQGHAEVNALAMA 67

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G +A+GATAYVTLEPCSHYGR+PPCA+ +   G+ +V+  + D + +V+G+GL+ LS  G
Sbjct: 68  GSKAKGATAYVTLEPCSHYGRTPPCAEGLKAAGVVKVIAAMVDSNPQVAGKGLKILSDAG 127

Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++E++ +     +  R      ++T K+A S D    +    S  ITG  ++  
Sbjct: 128 IEVAYGLLEAQARALNLGFFKRMEHGLPYVTCKMAASIDGKTALNNGQSKWITGAAARQD 187

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--------HSPMRIILDPHFKLSLDS 234
           V L RAQS AIL G  TVL DD +L  R N L +          P+R+I+D   +L+ + 
Sbjct: 188 VQLYRAQSCAILTGADTVLVDDAKLNVRKNELPQALPTQLPLRQPVRVIIDSQNRLTPNL 247

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVE 293
            +   A+ + +II T   D         K+I +   + + DL  +L  L      ++ +E
Sbjct: 248 ALF--AIESEIIIFTTKVDKSQHWPHFVKHIVVTASNSKVDLTAVLKKLAKLQFNTVWLE 305

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG 321
            GA +A   +   L+D  I Y +  +IG
Sbjct: 306 AGATLAGKMVELDLIDEFIFYLAPKLIG 333


>gi|156973476|ref|YP_001444383.1| pyrimidine deaminase [Vibrio harveyi ATCC BAA-1116]
 gi|156525070|gb|ABU70156.1| hypothetical protein VIBHAR_01166 [Vibrio harveyi ATCC BAA-1116]
          Length = 374

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 122/334 (36%), Positives = 175/334 (52%), Gaps = 24/334 (7%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           +S D   MS AL+ ++  +  T+ NP+V C+IV+DG ++G G     G PHAEV A+  A
Sbjct: 11  TSQDFEMMSRALKLAKRGIYTTAPNPNVGCVIVRDGEIVGEGHHHRAGEPHAEVHAMRMA 70

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G++ +GATAYVTLEPCSHYGR+PPCA+ +I+  + RVV  ++DP+ +V+GRG Q L   G
Sbjct: 71  GDKTQGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMEDPNPKVAGRGFQMLRDAG 130

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + V   ++ESE       ++        +I LK+A S D    ++   S  IT   ++  
Sbjct: 131 VEVQVGLLESEAIELNKGFIKFMQTGMPYIQLKMAASLDGQSALSNGQSQWITSPKARQD 190

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL---------QE--HSPMRIILDPHFKLS 231
           V   RA S  IL    TV+ D+  L  R   L         QE    P R+I D   +LS
Sbjct: 191 VQRYRALSCGILSTSKTVIDDNASLNVRWEDLPKSVQTQYPQEDVRQPPRVIFDRQSQLS 250

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL-TILVGRGVTSL 290
            D K+  T      IIV++  D V  L    +N  I      DL   L  +  G  +  L
Sbjct: 251 DDLKLFNTD--GERIIVSQGSDMVPELG---ENGQI------DLAATLRNVASGYHINHL 299

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            VE GA +A S I + LVD +I+Y +  ++G  G
Sbjct: 300 WVEAGATLASSLIKANLVDELIVYLAPKLMGSDG 333


>gi|168493876|ref|ZP_02718019.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           CDC3059-06]
 gi|169833009|ref|YP_001693699.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           Hungary19A-6]
 gi|168995511|gb|ACA36123.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           Hungary19A-6]
 gi|183576084|gb|EDT96612.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           CDC3059-06]
          Length = 366

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/320 (34%), Positives = 174/320 (54%), Gaps = 7/320 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G PHAE  AL+   + 
Sbjct: 3   DSKYMKLAIKLAQKGAGYVNPNPMVGAIIVKDNHIIGQGYHEFFGGPHAERNALKNCRKS 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + V
Sbjct: 63  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A+S D  I      S  IT   ++  VH 
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 183 LRHYVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIG 321
            +  ++VD + +Y +  + G
Sbjct: 301 ALEQQIVDELKIYIAPKIFG 320


>gi|301799334|emb|CBW31869.1| riboflavin biosynthesis protein [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           and 5-amino-6-(5-phosphoribosylamino)uracil reductase]
           [Streptococcus pneumoniae OXC141]
          Length = 366

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/320 (34%), Positives = 174/320 (54%), Gaps = 7/320 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G PHAE  AL+   + 
Sbjct: 3   DSKYMKLAIKLAQKGAGYVNPNPMVGAIIVKDNHIIGQGYHEFFGGPHAERNALKNCRKS 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + V
Sbjct: 63  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A+S D  I      S  IT   ++  VH 
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 183 LRHYVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIG 321
            +  ++VD + +Y +  + G
Sbjct: 301 ALEQQIVDELKIYIAPKIFG 320


>gi|254491989|ref|ZP_05105167.1| riboflavin biosynthesis protein RibD [Methylophaga thiooxidans
           DMS010]
 gi|224462804|gb|EEF79075.1| riboflavin biosynthesis protein RibD [Methylophaga thiooxydans
           DMS010]
          Length = 368

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/330 (33%), Positives = 173/330 (52%), Gaps = 29/330 (8%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM+ A++ +   +  T  NP V C+IVK+  +IG G     G  HAEV A++ AG  A G
Sbjct: 7   FMARAIQLAERGLYTTDPNPRVGCVIVKNDEIIGEGWHMRAGEGHAEVNAIQAAGHAAEG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128
           A  YVTLEPCSH+GR+PPC   +I   ++RV V + DP+  VSG G+  L Q G+ V   
Sbjct: 67  ADCYVTLEPCSHFGRTPPCVDALITAKVKRVFVAMTDPNPVVSGSGITRLRQAGVEVHTD 126

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++ ++ +     +  R    +  I  K+A+S D    MA   S  ITG  ++  V  LRA
Sbjct: 127 ILAAQSEKLNPGFCQRMRIGKPFIRSKLAMSLDGRTAMASGESKWITGPEARADVQKLRA 186

Query: 189 QSDAILVGIGTVLADDPELTCR---------LNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +S AI+ GIGTVLADDP L  R           G +   P+R+++D   ++  +++I++ 
Sbjct: 187 RSSAIMTGIGTVLADDPLLNVRPEQSDNTWYPQGQKVRQPLRVVVDSKMRMPENARILQE 246

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYC-------DCRDLKKLLTILVGRGVTSLLV 292
             +            +LA A  KK  N           D  DL  L+++L  R V  L+V
Sbjct: 247 KRV------------LLATAQDKKAPNGAESIVLPEDGDIIDLTALMSVLAQREVNELMV 294

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
           E G  +  + + +RL+D +++Y +  ++G+
Sbjct: 295 EAGGVLNGAMLKARLIDELVIYMAPKIMGD 324


>gi|330888055|gb|EGH20716.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 276

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/247 (40%), Positives = 140/247 (56%), Gaps = 11/247 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D  +M+ AL  +R  +  T  NP V C+IV+DG ++G G     G PHAEV AL +A
Sbjct: 6   AALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQA 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            E ARGATAYVTLEPCSH GR+PPCA  ++  G+ RVV  + DP+  VSGRGL  L   G
Sbjct: 66  SELARGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPEVSGRGLLRLMNAG 125

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++ESE +     +L R    + +I +K+A+S D    MA   S  ITG  +++ 
Sbjct: 126 IGVQCGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARSA 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSL 232
           V  LRAQS  +L G  TVLAD   LT R + L              P+R+++D   ++ L
Sbjct: 186 VQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLRVPL 245

Query: 233 DSKIIKT 239
           D+   + 
Sbjct: 246 DAPFFQA 252


>gi|37527755|ref|NP_931100.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36787191|emb|CAE16271.1| riboflavin biosynthesis protein [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (riboflavin-specific deaminase);
           5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
           reductase)] [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 369

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 123/335 (36%), Positives = 180/335 (53%), Gaps = 28/335 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M+ AL  +R     TS NP+V C+IV DG ++G G     G PHAEV AL+ AG++
Sbjct: 4   DKKYMARALELARQGRFTTSPNPNVGCVIVHDGQIVGEGFHLRSGEPHAEVYALQIAGDK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YVTLEPCSH+G++PPCA  +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 64  AKGATVYVTLEPCSHHGKTPPCADALIAAGVSRVVAAMQDPNPQVAGRGLYKLQQAGIAV 123

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  +M  E +     +L R      +I LK+A S D    +A   S  IT   ++  V  
Sbjct: 124 EHGLMMEEAESLNRGFLKRMRTGFPYIQLKMATSLDGRTALASGESKWITSPQARCDVQK 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLSLDS 234
            RAQ  AIL    TVLADDP LT R + L               P+R+I+D   ++S   
Sbjct: 184 FRAQCSAILSSSSTVLADDPHLTVRWSELDAEIQAVYPEENLCQPVRVIVDSQNRVSPQH 243

Query: 235 KIIKTA---LLAPVII----VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
           ++I+      LA   +    ++EN + +L  A     I +      DL  L+  L  R +
Sbjct: 244 QVIQQPGYCWLARTKVDEHDLSENVEQILLPAH---GIGV------DLVSLMMQLGKRQI 294

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
            ++  E GA +A + +   LVD ++LY +  V+G+
Sbjct: 295 NTVWTECGALLAGALLTLGLVDELVLYVAPKVLGD 329


>gi|257467357|ref|ZP_05631668.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315918487|ref|ZP_07914727.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|313692362|gb|EFS29197.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 359

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 113/326 (34%), Positives = 178/326 (54%), Gaps = 18/326 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  ++   G  + NP V  ++VK+G +IG+G     G PHAEV AL+EAGEE
Sbjct: 3   DLEYMHLALELAKHGEGRVNPNPLVGAVVVKNGKIIGKGYHHEYGGPHAEVFALQEAGEE 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YVTLEPCSHYG++PPCA+ II+ GI+R V+ + DP+  V G+G+  +   GI V
Sbjct: 63  AKGATIYVTLEPCSHYGKTPPCAKKIIDSGIKRCVISMGDPNPLVGGKGISMMRDAGIEV 122

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  + E+E +     +L     K   + LK  ++ D  +      S  IT  I++ +V  
Sbjct: 123 EIGLCETEARALNRVFLKYISTKLPFLFLKCGITLDGKLATRDFQSKWITNEIAREKVQQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
           LR +   I+VG+ TV+ D+P L  R+ NG     P RII+DP+ ++ L SK++       
Sbjct: 183 LRNKYTGIMVGVHTVIEDNPSLDARIENG---RDPYRIIVDPYLEIPLSSKLLHRHDKKT 239

Query: 245 VIIVTENDDPVLALAFRKKN------INIIYCDCRDLK-KLLTILVGR-GVTSLLVEGGA 296
           VII +      L    +KK          I+ + R      + I +G+ G+ S+L+EGG 
Sbjct: 240 VIITS-----FLEKETQKKKELDDLETRFIFLEDRIFSWPQMLIEIGKLGIDSVLLEGGG 294

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGE 322
            +  S     ++D   ++ +  ++G+
Sbjct: 295 QLISSAFREDVIDGGEIFIAPKILGD 320


>gi|293610032|ref|ZP_06692333.1| hypothetical protein HMPREF0013_02182 [Acinetobacter sp. SH024]
 gi|292827264|gb|EFF85628.1| hypothetical protein HMPREF0013_02182 [Acinetobacter sp. SH024]
          Length = 361

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 119/327 (36%), Positives = 184/327 (56%), Gaps = 21/327 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++  +  T  NP+V C+IVKD  +IG+G     G PHAEV AL EAGE 
Sbjct: 7   DQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGQGFHPKAGQPHAEVFALREAGEH 66

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPC+HYGR+PPCA+ +++  +++VVV   DP+  V+G+G+Q L   GI V
Sbjct: 67  AQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILENAGIEV 126

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  + E         +L        ++ LK+A S D    MA   S  ITG  ++  V  
Sbjct: 127 EVGICEDLASKLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAARQDVQH 186

Query: 186 LRAQSDAILVGIGTVLADDPELTCR-LNGLQEHS---PMRIILDPHFKLSLDSKIIKTAL 241
            RA S A++ GI TV+ADD +L  R LN     +   P R++LD   +L L++KI+    
Sbjct: 187 WRAISGAVITGIETVIADDCQLNVRSLNNFDIETVAQPKRVVLDRQGRLPLNAKIL---- 242

Query: 242 LAPVIIVTENDDPVLALA-FRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAA 297
                   EN + V+ +  +R++  ++ +I  + + LK LL  L  +  +  +LVE GA 
Sbjct: 243 --------ENPETVMVMGPYRQELADLGVIQLEIQPLKMLLQTLSKQHQIYDVLVEAGAT 294

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGG 324
           ++ +F+   LVD +I Y +  ++G+  
Sbjct: 295 LSTAFLQEGLVDELISYIASTLLGKSA 321


>gi|296453532|ref|YP_003660675.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296182963|gb|ADG99844.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 366

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/328 (35%), Positives = 174/328 (53%), Gaps = 8/328 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DAR+M  A+  ++   G  + NP V  +IVKD  +IG+G     G  HAE  AL    + 
Sbjct: 3   DARYMGLAIELAKRGAGYVNPNPMVGAVIVKDDRIIGQGYHEMFGGLHAERNALRHCTQS 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GAT YVTLEPC HYG++PPC + I+E GI RVVV   D +  VSG+G++ L   GI V
Sbjct: 63  PAGATLYVTLEPCCHYGKTPPCTEAIVESGIARVVVGTLDCNPVVSGKGVRMLEDHGIRV 122

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  ++  E +  +  +         ++ +K A++ D  I      S  I+G  S+ +VH 
Sbjct: 123 DVGVLADECRHLIRVFSKYITTHTPYVIMKYAMTMDGKIATHTNQSRWISGEESRRRVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    A++VG+ TV+ DDP LTCR+      +P+R++ D   +  L S+I++TA     
Sbjct: 183 LRRSVAAVMVGVNTVIEDDPLLTCRM--AHGRNPVRVVCDTRLRTPLTSRIVQTANDVRT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T  DD   A  +R+    I+      D  DL  ++  L    + S+L+EGG+A+  S
Sbjct: 241 YIATACDDERKAEDYRRHGCEILAVGRKGDHVDLADVVRRLGDMQMDSVLLEGGSAMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPL 329
            +  R+VD   +Y +  + G G   SP+
Sbjct: 301 ALEQRIVDEAHVYIAPKIFG-GTAKSPV 327


>gi|2493562|sp|P70814|RIBD_BACAM RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
           RecName:
           Full=Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase; Includes: RecName:
           Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|1592688|emb|CAA65189.1| deaminase [Bacillus amyloliquefaciens]
          Length = 371

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 117/329 (35%), Positives = 172/329 (52%), Gaps = 20/329 (6%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M+ A+  +R   G T  NP V  ++VK   ++G G     G  HAEV A+  AG  A+G
Sbjct: 5   YMNTAIELARRGEGQTQPNPLVGAVVVKKRQIVGMGAHLQYGEAHAEVHAINMAGSLAKG 64

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI----- 124
           A  YVTLEPCSHYG++PPCA+ I++ GI+RV + V+DP+  V+G+G+  L + GI     
Sbjct: 65  ADLYVTLEPCSHYGKTPPCAELIMKSGIKRVFIAVEDPNPLVAGKGITMLEEAGIEVKTG 124

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           ++ +  E   K+FLH   T       ++TLK A S D         S  IT   ++    
Sbjct: 125 LLRQQAEELNKMFLHFMRT----GLPYVTLKAAASLDGKTATETGDSKWITSEAARLDAQ 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             R     ILVG GTV AD+P LTCRL    +  P+R+ILD    +   + ++ T   AP
Sbjct: 181 QYRKSHQRILVGAGTVKADNPSLTCRLPDAVKQ-PVRVILDTKLTVPETANVL-TDGAAP 238

Query: 245 VIIVT------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
             I T         D + AL  +   +  +  D   + ++L+IL   G+ S+ VEGGA+V
Sbjct: 239 TWIFTAAGSDVRKKDRLTALGIK---VFTLETDRIHIPEVLSILAENGIMSVYVEGGASV 295

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS 327
             SF+ +   D +  Y + I+IG    PS
Sbjct: 296 HGSFVKAGCFDELHFYFAPILIGGTLAPS 324


>gi|189346359|ref|YP_001942888.1| riboflavin biosynthesis protein RibD [Chlorobium limicola DSM 245]
 gi|189340506|gb|ACD89909.1| riboflavin biosynthesis protein RibD [Chlorobium limicola DSM 245]
          Length = 372

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 174/343 (50%), Gaps = 17/343 (4%)

Query: 23  GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG--EEARGATAYVTLEPCS 80
           G  S NP V C+IV  G VIG G     G PHAEV A+      E  R AT YV LEPCS
Sbjct: 28  GAVSPNPMVGCVIVSGGQVIGEGFHRQYGGPHAEVNAVASVADRERLRNATLYVNLEPCS 87

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLH 139
           H+G++PPC+  I+E GI RVV+   DP ++V+G+G+  L   G+ +++ ++E+E +    
Sbjct: 88  HFGKTPPCSDMIVEMGIPRVVIGCRDPHLKVAGKGIAKLLAGGVEVIEGVLETESERLNE 147

Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199
           A++T   + R  + LK+A S D  I      S  ITG  ++ +VH LR   DA+L G  T
Sbjct: 148 AFITVHRKGRPFVALKLAQSLDGKIATVSGASKWITGEEARTEVHRLRCSFDAVLTGAAT 207

Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
           V+ADD  LT R       +P+R++LD    + + + I  T     V       D   A  
Sbjct: 208 VIADDSRLTVR--HCAGRNPIRVVLDSRLSIPIGAGIFDTEAETVVFTALSMQDSQKARQ 265

Query: 260 FRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
             KK + +     R    DL  +L  L  R + S+LVEGG  +  SF+   L D + ++ 
Sbjct: 266 LAKKGVAVFGVAERECGLDLAAVLERLHERRILSVLVEGGGRLGSSFVRMELFDKLYMFI 325

Query: 316 SQIVIGEGGIPS------PLEEGYLEKNFMCVRRDYFGSDVCL 352
           + ++ G  G+ +       L E  +  +F    R  FG D+ L
Sbjct: 326 APVLFGGDGLSAFAPIGITLPEQAIRLDFEPPSR--FGRDLLL 366


>gi|183603379|ref|ZP_02714555.2| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           SP195]
 gi|183571310|gb|EDT91838.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           SP195]
          Length = 384

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 109/320 (34%), Positives = 173/320 (54%), Gaps = 7/320 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G PHAE  AL+   E 
Sbjct: 21  DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 80

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + V
Sbjct: 81  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 140

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A+S D  I      S  IT   ++  V  
Sbjct: 141 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVQQ 200

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 201 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 258

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S
Sbjct: 259 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 318

Query: 302 FINSRLVDSIILYRSQIVIG 321
            +  ++VD + +Y +  + G
Sbjct: 319 ALEQQIVDELKIYIAPKIFG 338


>gi|163803478|ref|ZP_02197350.1| hypothetical protein 1103602000439_AND4_19771 [Vibrio sp. AND4]
 gi|159172738|gb|EDP57587.1| hypothetical protein AND4_19771 [Vibrio sp. AND4]
          Length = 375

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 119/334 (35%), Positives = 173/334 (51%), Gaps = 24/334 (7%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           +S D   MS AL+ ++  +  T+ NP+V C+IV+DG ++G G     G PHAEV A+  A
Sbjct: 12  TSQDFEMMSRALKLAKRGIYTTAPNPNVGCVIVRDGEIVGEGHHHRAGEPHAEVHAMRMA 71

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G++ +GATAYVTLEPCSHYGR+PPCA+ +I+  + RVV   +DP+ +V+GRG Q L   G
Sbjct: 72  GDKTQGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCATEDPNPKVAGRGFQMLRDAG 131

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + V   +++SE       ++        +I LK+A S D    ++   S  IT   ++  
Sbjct: 132 VDVQVGLLQSEAIELNKGFIKFMQTGMPYIQLKMAASLDGQSALSNGQSQWITSPKARQD 191

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLS 231
           V   RA S  IL    TVLAD+  L  R + L +             P R+I D   +LS
Sbjct: 192 VQRYRALSGGILSSSKTVLADNASLNVRWDDLPKSVQTQYLKQDVRQPSRVIFDRQSQLS 251

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSL 290
            D K+  T      IIV +  D    L    +N  I      DL   L ++     +  L
Sbjct: 252 DDLKLFNTD--GERIIVRQGGDICPEL---DENGQI------DLAATLKVVASECHINHL 300

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            VE GA +A S I + LVD +I+Y +  ++G  G
Sbjct: 301 WVEAGATLASSLIKANLVDELIVYLAPKLMGSDG 334


>gi|25010822|ref|NP_735217.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
           NEM316]
 gi|23095201|emb|CAD46411.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 369

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/317 (34%), Positives = 179/317 (56%), Gaps = 7/317 (2%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M+ AL+ +   +G  + NP V  +IVKD  +I +G     G  HAE QA++ A E+  G
Sbjct: 7   YMALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDISG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           +T YVTLEPC H G+ PPC + +I+ GI++VVV   DP+  VSG+G+  L ++ + V+  
Sbjct: 67  STLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKECLNVEVG 126

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++  E       ++     K+  + LK A++ D  I      S  I+   S+  V  LR 
Sbjct: 127 ILREECDALNERFIFHMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKLRQ 186

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           +  AI+VGI TVLAD+P LTCR+   +  + +RI+ D   K+ LDS ++K+A   P  I 
Sbjct: 187 KCSAIMVGINTVLADNPRLTCRIP--KGEALVRIVCDSQLKIPLDSYLVKSAKTIPTWIA 244

Query: 249 TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           T +D+       ++    +I    +    DLK L+TIL   G+ SLL+EGG+++  S + 
Sbjct: 245 TCSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQEGIDSLLIEGGSSLHFSALK 304

Query: 305 SRLVDSIILYRSQIVIG 321
           + +V+ +I++ +  +IG
Sbjct: 305 AGIVNRLIVFIAPKIIG 321


>gi|188994131|ref|YP_001928383.1| putative riboflavin biosynthesis protein [Porphyromonas gingivalis
           ATCC 33277]
 gi|188593811|dbj|BAG32786.1| putative riboflavin biosynthesis protein [Porphyromonas gingivalis
           ATCC 33277]
          Length = 330

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/326 (35%), Positives = 173/326 (53%), Gaps = 17/326 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++   G TS NP V  ++V  G +IG G     G PHAEV A+    + 
Sbjct: 4   DPLYMRRAIELAQNAEGFTSPNPLVGAVLVAHGRIIGEGYHHCAGMPHAEVIAINSVRDR 63

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           A  R +T YV+LEPCSHYG++PPCA+ I+  GI  VVV + DP   VSGRG++ L    +
Sbjct: 64  ALLRESTLYVSLEPCSHYGKTPPCAELILREGIPHVVVAMLDPFPSVSGRGIKMLRDASV 123

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM----AGCGSVPITGFIS 179
            V   ++  E +     +LT Q + R ++TLK A S D  I      A    V ++  ++
Sbjct: 124 SVQVGLLAEEAEELNRHFLTAQRQHRPYVTLKWAESSDGFIDALRDDASTPPVRLSTPLT 183

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
              VH  R   DAILVG  T L D+P LT R       +P+R++ D H  L     +   
Sbjct: 184 TRFVHHRRMIHDAILVGFRTALLDNPSLTVR--HWYGRNPLRVVTDRHLALPRHLTLFDG 241

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297
           ++  P ++ TE + P    +    +++ +  D     ++++L  L  RG+ SLLVEGGA 
Sbjct: 242 SV--PTLVFTEKEQP----SGYPSSVSFVRIDPSRPPVEQMLAELHARGIQSLLVEGGAC 295

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323
           +  SFI+S L D + + RS I++ EG
Sbjct: 296 ILRSFIDSGLYDDVRIERSTIILNEG 321


>gi|56475984|ref|YP_157573.1| riboflavin biosynthesis bifunctional RIBD:
           diaminohydroxyphosphoribosylaminopyrimid ine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           oxidoreductase protein [Aromatoleum aromaticum EbN1]
 gi|56312027|emb|CAI06672.1| riboflavin biosynthesis bifunctional RIBD:
           diaminohydroxyphosphoribosylaminopyrimid ine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           oxidoreductase protein [Aromatoleum aromaticum EbN1]
          Length = 366

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 113/328 (34%), Positives = 179/328 (54%), Gaps = 11/328 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S  D   M+ AL+ +   +  T+ NP V C+++K+G ++G G     G PHAEV AL
Sbjct: 1   MTYSEADHVAMARALQLAERGLETTTPNPRVGCVLMKEGSIVGEGWHRRAGEPHAEVIAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AG+ ARGATAYVTLEPC+H+GR+PPCA  +I  G+ RVV  ++DP+  V+G G+  L 
Sbjct: 61  RAAGDTARGATAYVTLEPCTHHGRTPPCADALIAAGVTRVVAAMEDPNPLVAGTGVGRLR 120

Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             G+ V   ++ S+       +++R    R  + LK A + D    +    S  IT   +
Sbjct: 121 AAGLAVTTGLLASDAHELNIGFVSRMTRGRPWVRLKTASTLDGKTALNNGVSQWITADAA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H  RA++ A+L GIGTV  DDP+LT R     E  P+R+++D    + L +K+++ 
Sbjct: 181 RRDGHRWRARACAVLTGIGTVREDDPQLTVRAVPC-ERQPLRVLVDARLDIPLSAKLLQG 239

Query: 240 A--LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEG 294
              L+A  I   E+ +   ALA     + ++  + R   DL  L+  L  RG+  + VE 
Sbjct: 240 GGCLIATAI---EDCEKSAALAALGAEV-VVLPNGRGKVDLPSLMRELGDRGINEVHVEA 295

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGE 322
           G  +  S +    VD ++LY + +++G+
Sbjct: 296 GLKLNGSLLRENCVDELLLYVAPMLVGD 323


>gi|298490230|ref|YP_003720407.1| riboflavin biosynthesis protein RibD ['Nostoc azollae' 0708]
 gi|298232148|gb|ADI63284.1| riboflavin biosynthesis protein RibD ['Nostoc azollae' 0708]
          Length = 375

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 120/362 (33%), Positives = 188/362 (51%), Gaps = 10/362 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S FD+  M   L+ +R  +G TS NP V  ++V+D  ++G G     G PHAEV AL  A
Sbjct: 14  SEFDSLMMQWCLQLARRALGRTSPNPLVGAVVVQDREIVGEGFHPRAGEPHAEVFALRAA 73

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE+A GAT YV+LEPC+HYGR+PPC++ +I  GI +VVV + DP+  V+G G+  L   G
Sbjct: 74  GEKAHGATIYVSLEPCNHYGRTPPCSEGLIAAGISKVVVGMVDPNPLVAGGGIARLRAAG 133

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I ++  + E+  +     ++ R V K+    LK A++ D  I  +   S  IT   ++++
Sbjct: 134 IEVLVGVEEAACRQLNEGFIHRIVHKQPLGILKYAMTLDGKIATSSGHSAWITNPDARSE 193

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LRA  DA++VG  TV  D+P LTC  +    ++P+R+++     L  D+++   A  
Sbjct: 194 VHQLRAACDAVIVGGNTVRQDNPFLTC--HQWDGNNPLRVVMSRSLNLPEDARLWNVA-E 250

Query: 243 APVIIVTE-NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           AP +++TE    P        K + +I         ++  L   G  S+L E G  +A S
Sbjct: 251 APTLVLTEVGSSPDFQKMLHGKGVEVIELPLLTPDHVMAHLYELGFCSVLWECGGTLAAS 310

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
            I    V  I+ + +  +IG    P+P+     +  F  +        VC   +G + CL
Sbjct: 311 AIAQGAVQKILAFIAPKIIGGSHAPTPVG----DLGFTTMTEALRLEKVCWRVVGSD-CL 365

Query: 362 QE 363
            E
Sbjct: 366 VE 367


>gi|226226877|ref|YP_002760983.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Gemmatimonas aurantiaca T-27]
 gi|226090068|dbj|BAH38513.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Gemmatimonas aurantiaca T-27]
          Length = 384

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 128/361 (35%), Positives = 186/361 (51%), Gaps = 19/361 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM  A+  +    G  + NP V  ++V+DG V+G G     G PHAEV AL  A   
Sbjct: 25  DVRFMRRAIALAERGAGQVAPNPKVGAVLVRDGQVVGEGWHQQYGGPHAEVHALAAAHAV 84

Query: 67  ARGATA----YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A  A      YV+LEPC+H+G++PPC + +I  G+ RVV    DP+ + +G G++ L   
Sbjct: 85  AANAARGATAYVSLEPCNHHGKTPPCTEALIAAGVARVVCATRDPNPKAAG-GIERLEAA 143

Query: 123 GIIVD-RMMESEGKI----FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           GI V   + E E  +    F HA    +   R  +TLK+AVS D  I  A      +TG 
Sbjct: 144 GIRVTVGVCEHEALVQNAPFFHAA---RGTDRPFVTLKLAVSIDGAIVDASRQRGWLTGP 200

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            +   VH LRA +DA+ VGIGT LADDP LT RL      +P RI+ D   +L LDS ++
Sbjct: 201 AAHAAVHALRADADAVAVGIGTALADDPALTVRLVEAPRVAPRRIVFDRQGRLPLDSALV 260

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
           +TA   PV ++T    PV A A     + ++  +   L   L  L   GV  LLVEGGA 
Sbjct: 261 RTAGEIPVSVITHAPRPVAANALADAGVQVL--EAAGLADALRTLWAEGVRHLLVEGGAE 318

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLE 353
           +  + +++ LV  +I++++ +++G G + +    P            + R  FG D+   
Sbjct: 319 LGSALLHAGLVHHLIIFQAPVILGAGAVSAFATFPAAVADTAPRLRVLERRVFGDDLMTR 378

Query: 354 Y 354
           Y
Sbjct: 379 Y 379


>gi|32491211|ref|NP_871465.1| hypothetical protein WGLp462 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166418|dbj|BAC24608.1| ribD [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 384

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 189/368 (51%), Gaps = 32/368 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +++ A   +      T  NP+V C+IV +  ++G G     G  HAE+ AL+ AG+ 
Sbjct: 6   DLTYLNRAFNLAELGKFTTHPNPNVGCVIVLNKSIVGEGYHKIPGSDHAEICALKLAGKY 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+G+T YVTLEPCSH+G++P CAQ +I   ++ V+    DP+  VSG+G   L   GI V
Sbjct: 66  AKGSTVYVTLEPCSHHGKTPSCAQALINAKVKEVIASAVDPNPLVSGKGFSMLKNAGIKV 125

Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              + SE  I L+  +  R       ITLK+  S D         S  IT   S+  V +
Sbjct: 126 KYNIMSEKSIKLNLGFFKRMKYGIPWITLKLGSSIDGRTATKKGISKWITSVESRKDVQV 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLSLDS 234
           LRA+S AIL    TV+ D+ +LT R N L           +E  P+RII+D   K+    
Sbjct: 186 LRAKSGAILSSAKTVIEDNSKLTVRWNDLPNNVKLKYSLKEERQPIRIIIDNSNKILNSH 245

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----------DLKKLLTILVG 284
            IIK   +   ++ + ND+    L + +    II   C+          DL KL+ +L  
Sbjct: 246 DIIKHKGII-FLVRSLNDN----LTWPRHVKQIICSTCKKFSKTKTIRTDLFKLMILLGK 300

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF-MCVRR 343
             + S+L+E GA ++ SF+ S L+D IILY+S  ++GE G+P      +L K+F + +  
Sbjct: 301 NEINSVLIESGANLSGSFLLSGLLDEIILYQSPKILGEKGLPL----FFLHKSFKLNLSP 356

Query: 344 DYFGSDVC 351
            +  SDVC
Sbjct: 357 KFVISDVC 364


>gi|148992759|ref|ZP_01822402.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
           SP9-BS68]
 gi|147928485|gb|EDK79500.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
           SP9-BS68]
 gi|332075850|gb|EGI86317.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           GA17570]
          Length = 366

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 109/320 (34%), Positives = 173/320 (54%), Gaps = 7/320 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G PHAE  AL+   E 
Sbjct: 3   DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + V
Sbjct: 63  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A+S D  I      S  IT   ++  V  
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVQQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIG 321
            +  ++VD + +Y +  + G
Sbjct: 301 ALEQQIVDELKIYIAPKIFG 320


>gi|314933920|ref|ZP_07841285.1| riboflavin biosynthesis protein RibD [Staphylococcus caprae C87]
 gi|313654070|gb|EFS17827.1| riboflavin biosynthesis protein RibD [Staphylococcus caprae C87]
          Length = 349

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 111/317 (35%), Positives = 167/317 (52%), Gaps = 7/317 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           +RFM+ A++ ++   G T  NP V  ++VKDG ++G G     G  HAEVQAL+ AGE A
Sbjct: 2   SRFMNYAIQLAQMVDGQTGINPPVGSVVVKDGRIVGLGAHLKKGDKHAEVQALDMAGENA 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           + AT YV+LEPC+H+G +PPC   IIE GIR+V+  V   D  ++ +G + L + GI V+
Sbjct: 62  KDATIYVSLEPCTHHGSTPPCVNKIIEFGIRKVIYAV--KDTTLASKGDEILKEAGIEVE 119

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
                        + T +      +T+K++ S D         S  IT    K  V+ LR
Sbjct: 120 FQFNENAAELYKDFFTAKRNSIPELTVKVSSSLDGKQATDSDESKWITNKEVKEDVYKLR 179

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DA+L G  T+ ADDP  T R+   +   P+R+IL    ++  + ++      +P+ I
Sbjct: 180 HEHDAVLTGRKTIDADDPLYTTRVQDGKH--PIRVILSKSGQIDFEQQLFADT-ASPIWI 236

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            TEN++  L      K+I II  +  D   +L  L  RG+  LLVE G  V   F+ S  
Sbjct: 237 YTENEN--LKNQSNDKHIEIICLEKCDSTAILKDLYQRGIGKLLVEAGPNVTSQFLQSHH 294

Query: 308 VDSIILYRSQIVIGEGG 324
           +D +ILY +  +IG  G
Sbjct: 295 LDELILYLAPKLIGGSG 311


>gi|50843212|ref|YP_056439.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           KPA171202]
 gi|50840814|gb|AAT83481.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           KPA171202]
 gi|315106176|gb|EFT78152.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL030PA1]
          Length = 331

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 110/297 (37%), Positives = 160/297 (53%), Gaps = 28/297 (9%)

Query: 28  NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87
           NP V C+IV +  VIG+G     G PHAEV+AL +AG++ARGATA VTLEPC H GR+ P
Sbjct: 25  NPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDARGATAVVTLEPCHHTGRTGP 84

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT-RQV 146
           C+  +++ GI RVV+   DP+   SG G QWL   G+ V   + SE    L+A  T  Q+
Sbjct: 85  CSHALVDAGIARVVIAQSDPNPVASG-GEQWLRTHGVEVVTGVLSEEATALNADWTFSQI 143

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
            +R  +  K A S D         S  ITG  +++QV L RA+  AI+VG GT LAD+P 
Sbjct: 144 HRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNPR 203

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
           LT RL G+  H P+R+++                            +P      R  + +
Sbjct: 204 LTVRLPGVT-HQPLRVVVG-------------------------MREPPAGCHLRDDSAS 237

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            ++    D  ++L +L  RGV  + +EGG  +A +F+ + LVD +I + +  V+G+G
Sbjct: 238 TLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLVDEVIAHMAPTVLGDG 294


>gi|257093103|ref|YP_003166744.1| riboflavin biosynthesis protein RibD [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045627|gb|ACV34815.1| riboflavin biosynthesis protein RibD [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 365

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 117/327 (35%), Positives = 183/327 (55%), Gaps = 11/327 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D  FM+ ALR +   +  T+ NP V C+IV DG V+G G     G  HAEV AL+ A
Sbjct: 3   SAADHDFMARALRLAERGLYTTTPNPRVGCVIVADGEVVGEGWHVRAGGRHAEVHALQAA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE+A GATAYVTLEPCSH+GR+PPC + ++  G+ RVV  + DP+ +V+G GL  L   G
Sbjct: 63  GEKAAGATAYVTLEPCSHHGRTPPCVEALLAAGVARVVAAMQDPNPQVAGSGLASLQAAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           +  +  ++ +E       ++ R    R  + LK+A S D    +    S  +TG  ++  
Sbjct: 123 VRAECGLLAAEAGEINIGFVARMTRCRPWLRLKLAASLDGKTALRNGASQWLTGPAARQD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGL--QEHSPMRIILDPHFKLSLDSKIIKT 239
            H  RA++ AIL GIGTV  DDP+L  R + G   +   P+++++D   +LS D+++++ 
Sbjct: 183 GHRWRARACAILTGIGTVRHDDPQLNVRGVEGFAGELRQPLKVVVDSRLELSPDARLLRD 242

Query: 240 A--LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGG 295
              L+A  ++     D   ALA R   + ++       DL  LL  L  RG+  +  E G
Sbjct: 243 GQVLVAAALVDRAKVD---ALAQRGAEVLLLPGPAGRVDLAALLDELARRGINEVHGEAG 299

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGE 322
            A+  S +++ LVD ++LY +  ++G+
Sbjct: 300 FALGGSLLDAGLVDELLLYLAPCLVGD 326


>gi|150016108|ref|YP_001308362.1| riboflavin biosynthesis protein RibD [Clostridium beijerinckii
           NCIMB 8052]
 gi|149902573|gb|ABR33406.1| riboflavin biosynthesis protein RibD [Clostridium beijerinckii
           NCIMB 8052]
          Length = 361

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 109/321 (33%), Positives = 173/321 (53%), Gaps = 7/321 (2%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D ++M  AL  ++  +G  + NP V  +IVKD  +IG G     G  HAE  A++ A +
Sbjct: 1   MDEKYMEIALELAKRGIGKVNPNPLVGAVIVKDNEIIGEGYHECYGEAHAERNAVKNATK 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
               +T YVTLEPC+HYG++PPC   IIE   +RVV+ + DP+  VSG+ ++ L Q GI 
Sbjct: 61  SVEESTIYVTLEPCAHYGKTPPCVDLIIEKKFKRVVIGMLDPNELVSGKSVEKLKQHGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V  + E E K     ++     K   + LK  +S D  I      S  IT   S+    
Sbjct: 121 VVVGIKEKECKELNEIFIKYITSKIPFVILKSGMSIDGKIATYSGQSKWITSKESREDSQ 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR +  +I+VG+ TV+ D+PELTCR+N  ++   +RII+D + ++ L+SK++  +  A 
Sbjct: 181 HLRNRFHSIMVGVNTVIEDNPELTCRINDGKK--LIRIIVDSNLRIPLESKVLTNSDKAA 238

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
           +++ T   D       R   I +I    +D    LK+L+  +   G+ S+L+EGG  +  
Sbjct: 239 IVVTTLKSDKEKKKKLRSMGIKVIEVADKDNRVNLKELVKRVGEEGIDSILIEGGGTLNF 298

Query: 301 SFINSRLVDSIILYRSQIVIG 321
           S +  R+VD +  Y +  +IG
Sbjct: 299 SALEERIVDKVRFYIAPKIIG 319


>gi|91784896|ref|YP_560102.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Burkholderia xenovorans LB400]
 gi|91688850|gb|ABE32050.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Burkholderia xenovorans LB400]
          Length = 389

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 118/329 (35%), Positives = 171/329 (51%), Gaps = 15/329 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +R  +  T  NP V C++VK+G VIG G T   G  HAE++AL++A
Sbjct: 3   SQTDFVHMERALALARRGMYTTDPNPRVGCVLVKNGAVIGEGFTQPAGQDHAEIRALKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G + RGATAYVTLEPCSH+GR+PPC   +IE  +  VV  ++DP+  VSGRGL  L 
Sbjct: 63  RSRGHDLRGATAYVTLEPCSHFGRTPPCVNALIEAQVALVVAAMEDPNPLVSGRGLAILR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++ +E       +++R    R  + +K+A S D   G+    S  ITG  +
Sbjct: 123 DAGIEVRCGLLANEAHELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGVSQWITGEAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H  RA++ AIL GIGTV  DDP +T R        P R+++D    +  +++I+  
Sbjct: 183 RADGHAWRARASAILTGIGTVREDDPRMTVRAVDTPRQ-PQRVLIDSQLDVPPEAQILAG 241

Query: 240 ALLAPVIIVTENDDPV---LALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLV 292
              AP +I   N D      A A R +   I+         DL  +L +L  R V  L V
Sbjct: 242 ---APTLIFCGNLDQRHTDRANALRDRGAEIVQLANPAGKVDLPAVLKVLGERNVNELHV 298

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           E G  +  S +    VD +++Y +  ++G
Sbjct: 299 EAGYKLNGSLLREGCVDELLVYLAPSLLG 327


>gi|297622519|ref|YP_003703953.1| riboflavin biosynthesis protein RibD [Truepera radiovictrix DSM
           17093]
 gi|297163699|gb|ADI13410.1| riboflavin biosynthesis protein RibD [Truepera radiovictrix DSM
           17093]
          Length = 393

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 112/318 (35%), Positives = 168/318 (52%), Gaps = 14/318 (4%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GE 65
           R+MS AL  +    G T+ NP V C+IV+D  +IG G     G  HAEV+AL++A   G 
Sbjct: 14  RYMSRALELAERGRGSTAPNPMVGCVIVRDDEIIGEGWHERAGEAHAEVRALQDARSRGA 73

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
             RGAT YVTLEPC+H GR+PPC + I+E G+RRVV+   DPD RV G G+  L   G+ 
Sbjct: 74  RVRGATLYVTLEPCNHTGRTPPCTEAILEAGVRRVVIAALDPDPRVDGSGVARLQAAGVE 133

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V  ++ +E +     + T  +  R  +  K A++ D  I      S  ITG  ++ +V 
Sbjct: 134 VVTGVLAAEAEAQNEVFRTVHLRGRPWVLYKTAMTLDGKIATRTGRSRWITGPAARERVQ 193

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII----KTA 240
             RA   A+ VG+ TVL DDP LTCR+ G   H+P +++ D   +    +++     +  
Sbjct: 194 RWRAHLSAVAVGVNTVLLDDPLLTCRVPG--GHTPHKVVFDTVARTPPTAQLFHPDPQGE 251

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYC-DCR---DLKKLLTILVGRGVTSLLVEGGA 296
                + VTE        A R +   ++   + R   D++  L  L   GV +LL+EGG 
Sbjct: 252 AARVTLFVTERAPAARVAALRYRGAEVVVLPETRGRADVRSALAHLKEVGVQTLLLEGGG 311

Query: 297 AVAHSFINSRLVDSIILY 314
            +A SF   + VD + ++
Sbjct: 312 TLAWSFFEVQAVDRVAVF 329


>gi|256787680|ref|ZP_05526111.1| riboflavin-specific deaminase [Streptomyces lividans TK24]
          Length = 405

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 129/376 (34%), Positives = 186/376 (49%), Gaps = 39/376 (10%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  AL  +   VG T +NP+V C+++  +G  +  GV    G PHAEV AL  A    RG
Sbjct: 25  MRRALELAGAEVGSTGSNPAVGCVLLDAEGTTVATGVHRGPGTPHAEVDALRRARGRHRG 84

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            TA VTLEPC H GR+ PC++ +IE G+RRV+  V DP+   +G   +       +V  +
Sbjct: 85  TTAVVTLEPCDHQGRTGPCSKALIEAGVRRVLYAVADPNRVAAGGARRLADAGVEVVGGV 144

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           + +E +  L  +LT     R  +T K A + D     A   +  I+   S+   H LRA+
Sbjct: 145 LGAEAEAVLEMWLTAVRAGRPFVTWKFAATLDGRSAAADGSARWISSAESRADAHELRAR 204

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DA+LVG GT  +DDP L  R +G+  H P+RI LD   +L  DS+++  A  AP ++VT
Sbjct: 205 HDAVLVGSGTWRSDDPRLDLR-HGVVGHPPLRIALDARGELPPDSRLLDGA--APTLVVT 261

Query: 250 ENDDPVLALA-------FRKKNINI------------------IYCDCRD---LKKLLTI 281
              DP    A            IN                   +  D R       LL  
Sbjct: 262 ---DPATGTADHGESESNNNSGINTSTNTSTSRGANSGPDVLRLKTDARGHFPPLDLLAA 318

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS--PLEEGYLEK--N 337
           L GRGV S+LVEGG A+A SF+ + LVD ++ Y + +++G  G+ +  PL  G + +   
Sbjct: 319 LDGRGVRSVLVEGGPALAASFVRAGLVDRVVAYVAPLLLGSEGVSATGPLGIGSIREAHR 378

Query: 338 FMCVRRDYFGSDVCLE 353
           F     D  G D+ +E
Sbjct: 379 FRITSVDRIGPDLRIE 394


>gi|257462874|ref|ZP_05627280.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium
           sp. D12]
 gi|317060498|ref|ZP_07924983.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium sp. D12]
 gi|313686174|gb|EFS23009.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium sp. D12]
          Length = 359

 Score =  179 bits (455), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 105/319 (32%), Positives = 176/319 (55%), Gaps = 8/319 (2%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
            +M  AL+ ++   G  + NP V  ++VK+G +IG+G     G PHAEV AL+EAG EA+
Sbjct: 5   EYMHFALKLAKKGEGKVNPNPLVGAVVVKNGNIIGQGYHHQYGGPHAEVYALQEAGTEAK 64

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127
            AT YVTLEPCSHYG++PPCA+ II+ GI+R ++ ++DP+  V+G+G+  + + GI V+ 
Sbjct: 65  DATIYVTLEPCSHYGKTPPCAKKIIDSGIKRCIIAMEDPNPLVAGKGIAMMKEAGIQVEV 124

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + E+E ++    +L     K   + LK  ++ D  +      S  IT   ++ +V  LR
Sbjct: 125 GLCETEARVLNRVFLKYISTKTPFLFLKCGITLDGKLATRSFQSKWITNETARERVQYLR 184

Query: 188 AQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
            +   I+VGI TV+ D+P L  R+ NG     P RII+DP+ ++ L SK++       +I
Sbjct: 185 NKYMGIMVGIHTVIEDNPSLDARIENG---RDPYRIIVDPYLEIPLSSKLLHKKDKKVII 241

Query: 247 IVTENDDPV-LALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           I + ++          K  +  I+   R      +L  +   GV S+L+EGG  +  +  
Sbjct: 242 ITSLSEKETDKRKELEKLELRFIFLKERIFSFSNMLEEIGKLGVDSVLLEGGGQLISAAF 301

Query: 304 NSRLVDSIILYRSQIVIGE 322
              ++D   ++ +  ++G+
Sbjct: 302 QENVIDGGEIFIAPKILGD 320


>gi|21673577|ref|NP_661642.1| riboflavin biosynthesis protein RibD [Chlorobium tepidum TLS]
 gi|21646689|gb|AAM71984.1| riboflavin biosynthesis protein RibD [Chlorobium tepidum TLS]
          Length = 373

 Score =  179 bits (455), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 126/360 (35%), Positives = 182/360 (50%), Gaps = 17/360 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M   L  +    G  S NP V  +IV  G VIG G     G PHAEV A+    +E
Sbjct: 13  DETYMWRCLELAERGAGSVSPNPMVGSVIVCAGRVIGEGWHRQYGGPHAEVDAIASVEDE 72

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +  R +T YV LEPCSHYG++PPCA  I+E  I RVVV   DP  +V+G+G+  L + GI
Sbjct: 73  SLLRQSTLYVNLEPCSHYGKTPPCADLIVEKRIPRVVVGCLDPHEKVAGKGIARLREAGI 132

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V   ++E+E +    A++T   + R  + LK A + D  I  +   S  ITG  S+ QV
Sbjct: 133 EVTVGVLEAESERLNEAFMTSHRKGRPFVALKTAQTLDGRIATSLGASKWITGEESRCQV 192

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H LR   DA+L G  TVLAD+ ELT R    ++  P+R++LDP  ++  + +I   A   
Sbjct: 193 HRLRCIYDAVLCGASTVLADNTELTVRFCAGRQ--PLRVLLDPRLQVPHEFRIFNDAAKT 250

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
            V  + E  DP L      + I +          D  ++   L  R + S+LVEGG+ +A
Sbjct: 251 LVFALREEADPDLVRQLEARGIEVATVGEAEGSLDFAEVFAELHKRRLLSVLVEGGSRLA 310

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN------FMCVRRDYFGSDVCLE 353
            + + S  VD   ++ +  + G  G+ S    G    +      F  +RR  FG D+ LE
Sbjct: 311 SAMVRSGFVDKYYVFIAPKLFGGDGLASFGALGVTHPDYAVKLSFSGIRR--FGEDLLLE 368


>gi|206561395|ref|YP_002232160.1| multifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Burkholderia cenocepacia J2315]
 gi|198037437|emb|CAR53372.1| multifunctional riboflavin biosynthetic protein [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase]
           [Burkholderia cenocepacia J2315]
          Length = 373

 Score =  179 bits (455), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 121/330 (36%), Positives = 174/330 (52%), Gaps = 17/330 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +   +  T+ NP V C+IVKDG VIG G T   G  HAEVQAL++A
Sbjct: 3   SDTDFAHMQRALALAARGMYTTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G +  G+T YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L 
Sbjct: 63  RSRGYDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++  E       +++R    R  + +K A S D    +    S  ITG  +
Sbjct: 123 DAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIK 238
           +   H  RA++ AIL GIGTV  D+P LT R  G+     P RI++D    L LD+++++
Sbjct: 183 RLDGHAWRARACAILTGIGTVREDNPLLTVR--GIDTPRQPQRILVDSRLDLPLDARLLE 240

Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291
               AP++I     D    V A   + +   I+         DL  +L  L  RGV  L 
Sbjct: 241 G---APLLIFCGRLDAAGEVRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           VE G  +  S +  R VD +++Y +  ++G
Sbjct: 298 VEAGHKLNGSLLRERCVDELLVYLAPSLLG 327


>gi|194397666|ref|YP_002036884.1| riboflavin biosynthesis protein [Streptococcus pneumoniae G54]
 gi|194357333|gb|ACF55781.1| riboflavin biosynthesis protein [Streptococcus pneumoniae G54]
          Length = 366

 Score =  179 bits (455), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 109/320 (34%), Positives = 173/320 (54%), Gaps = 7/320 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G  HAE  AL+   E 
Sbjct: 3   DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGSHAERNALKNCRES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + V
Sbjct: 63  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A+S D  I      S  IT   ++  VH 
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIG 321
            +  ++VD + +Y +  + G
Sbjct: 301 ALEQQIVDELKIYIAPKIFG 320


>gi|21221143|ref|NP_626922.1| riboflavin-specific deaminase [Streptomyces coelicolor A3(2)]
 gi|289771571|ref|ZP_06530949.1| riboflavin biosynthesis protein RibD [Streptomyces lividans TK24]
 gi|8052397|emb|CAB92254.1| riboflavin-specific deaminase [Streptomyces coelicolor A3(2)]
 gi|289701770|gb|EFD69199.1| riboflavin biosynthesis protein RibD [Streptomyces lividans TK24]
          Length = 381

 Score =  179 bits (454), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 129/376 (34%), Positives = 186/376 (49%), Gaps = 39/376 (10%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  AL  +   VG T +NP+V C+++  +G  +  GV    G PHAEV AL  A    RG
Sbjct: 1   MRRALELAGAEVGSTGSNPAVGCVLLDAEGTTVATGVHRGPGTPHAEVDALRRARGRHRG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            TA VTLEPC H GR+ PC++ +IE G+RRV+  V DP+   +G   +       +V  +
Sbjct: 61  TTAVVTLEPCDHQGRTGPCSKALIEAGVRRVLYAVADPNRVAAGGARRLADAGVEVVGGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           + +E +  L  +LT     R  +T K A + D     A   +  I+   S+   H LRA+
Sbjct: 121 LGAEAEAVLEMWLTAVRAGRPFVTWKFAATLDGRSAAADGSARWISSAESRADAHELRAR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DA+LVG GT  +DDP L  R +G+  H P+RI LD   +L  DS+++  A  AP ++VT
Sbjct: 181 HDAVLVGSGTWRSDDPRLDLR-HGVVGHPPLRIALDARGELPPDSRLLDGA--APTLVVT 237

Query: 250 ENDDPVLALA-------FRKKNINI------------------IYCDCRD---LKKLLTI 281
              DP    A            IN                   +  D R       LL  
Sbjct: 238 ---DPATGTADHGESESNNNSGINTSTNTSTSRGANSGPDVLRLKTDARGHFPPLDLLAA 294

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS--PLEEGYLEK--N 337
           L GRGV S+LVEGG A+A SF+ + LVD ++ Y + +++G  G+ +  PL  G + +   
Sbjct: 295 LDGRGVRSVLVEGGPALAASFVRAGLVDRVVAYVAPLLLGSEGVSATGPLGIGSIREAHR 354

Query: 338 FMCVRRDYFGSDVCLE 353
           F     D  G D+ +E
Sbjct: 355 FRITSVDRIGPDLRIE 370


>gi|262280656|ref|ZP_06058439.1| pyrimidine deaminase [Acinetobacter calcoaceticus RUH2202]
 gi|262257556|gb|EEY76291.1| pyrimidine deaminase [Acinetobacter calcoaceticus RUH2202]
          Length = 361

 Score =  179 bits (454), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 121/331 (36%), Positives = 185/331 (55%), Gaps = 29/331 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++  +  T  NP+V C+IVKD  +IG G     G PHAEV AL +A E+
Sbjct: 7   DQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGEGFHPKAGQPHAEVFALRQAAEQ 66

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-- 124
           A+GATAYVTLEPC+HYGR+PPCA+ +++  +++VVV   DP+  V+G+G+Q L   GI  
Sbjct: 67  AQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILKNAGIEV 126

Query: 125 ---IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
              I + + E   + FL A  T       ++ LK+A S D    MA   S  ITG +++ 
Sbjct: 127 EVGICEDLAEKLNQGFLKAMST----GMPYVRLKVASSLDGRTAMASGESKWITGAVARQ 182

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----HSPMRIILDPHFKLSLDSKII 237
            V   RA S A++ GI TV+ADD +L  R  G  +      P RIILD   +L L +KI+
Sbjct: 183 DVQHWRAISGAVITGIDTVIADDCQLNVRTLGSVDIETIAQPKRIILDRQGRLPLAAKIL 242

Query: 238 KTALLAPVIIVTENDDPVLALA-FRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVE 293
                       EN + V+ +  +R++  ++ +I  + + LK LL  L  +  +  +LVE
Sbjct: 243 ------------ENPETVMVMGPYRQELADLGVIQLETQPLKVLLQTLSKQYQIYDVLVE 290

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            GA ++ +F+   LVD +I Y +  ++G+  
Sbjct: 291 AGATLSTAFLQEGLVDELISYIAPTLLGKSA 321


>gi|325124197|gb|ADY83720.1| bifunctional protein ribD [Acinetobacter calcoaceticus PHEA-2]
          Length = 361

 Score =  179 bits (454), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 119/327 (36%), Positives = 184/327 (56%), Gaps = 21/327 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++  +  T  NP+V C+IVKD  +IG+G     G PHAEV AL EAGE 
Sbjct: 7   DQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGQGFHPKAGQPHAEVFALREAGEH 66

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPC+HYGR+PPCA+ +++  +++VVV   DP+  V+G+G+Q L   GI V
Sbjct: 67  AQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILKNAGIEV 126

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  + E         +L        ++ LK+A S D    MA   S  ITG  ++  V  
Sbjct: 127 EVGICEDLASKLNQGFLKAMSTGIPYVRLKVASSLDGRTAMASGESKWITGSAARQDVQH 186

Query: 186 LRAQSDAILVGIGTVLADDPELTCR-LNGLQEHS---PMRIILDPHFKLSLDSKIIKTAL 241
            RA S A++ GI TV+ADD +L  R LN     +   P R++LD   +L L++KI+    
Sbjct: 187 WRAISGAVITGIETVIADDCQLNVRSLNNFDIETVAQPKRVVLDRQGRLPLNAKIL---- 242

Query: 242 LAPVIIVTENDDPVLALA-FRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAA 297
                   EN + V+ +  +R++  ++ +I  + + LK LL  L  +  +  +LVE GA 
Sbjct: 243 --------ENPETVMVMGPYRQELADLGVIQLEIQPLKMLLQTLSKQHQIYDVLVEAGAT 294

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGG 324
           ++ +F+   LVD +I Y +  ++G+  
Sbjct: 295 LSTAFLQEGLVDELISYIAPTLLGKSA 321


>gi|296160058|ref|ZP_06842878.1| riboflavin biosynthesis protein RibD [Burkholderia sp. Ch1-1]
 gi|295889804|gb|EFG69602.1| riboflavin biosynthesis protein RibD [Burkholderia sp. Ch1-1]
          Length = 391

 Score =  179 bits (454), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 118/329 (35%), Positives = 171/329 (51%), Gaps = 15/329 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +R  +  T  NP V C++VK+G VIG G T   G  HAE++AL++A
Sbjct: 3   SQTDFVHMERALALARRGMYTTDPNPRVGCVLVKNGEVIGEGFTQPAGQDHAEIRALKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G + RGATAYVTLEPCSH+GR+PPC   +IE  +  VV  ++DP+  VSGRGL  L 
Sbjct: 63  RSRGHDLRGATAYVTLEPCSHFGRTPPCVNALIEAQVALVVAAMEDPNPLVSGRGLAILR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++ +E       +++R    R  + +K+A S D   G+    S  ITG  +
Sbjct: 123 DAGIEVRCGLLANEAHELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGVSQWITGEAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H  RA++ AIL GIGTV  DDP +T R        P R+++D    +  +++I+  
Sbjct: 183 RADGHAWRARASAILTGIGTVRGDDPRMTVRAVDTPRQ-PQRVLIDSQLDVPPEAQILAG 241

Query: 240 ALLAPVIIVTENDDPV---LALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLV 292
              AP +I   N D      A A R +   I+         DL  +L +L  R V  L V
Sbjct: 242 ---APTLIFCGNLDQRHTDRANALRDRGAEIVQLANPAGKVDLPAVLKVLGERNVNELHV 298

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           E G  +  S +    VD +++Y +  ++G
Sbjct: 299 EAGYKLNGSLLREGCVDELLVYLAPSLLG 327


>gi|157146970|ref|YP_001454289.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Citrobacter koseri ATCC BAA-895]
 gi|157084175|gb|ABV13853.1| hypothetical protein CKO_02747 [Citrobacter koseri ATCC BAA-895]
          Length = 367

 Score =  179 bits (454), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 195/368 (52%), Gaps = 22/368 (5%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AG+
Sbjct: 2   LDEFYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGD 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121

Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSETEQLNKGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R   L         QE+   P+RI+LD   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWPELDASTQTLYPQENLRQPIRIVLDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLV 292
            +I++          T++D  +     R  ++ +   +      +L +L+G+  + S+ V
Sbjct: 242 HRIVQQPGDT-WFARTQDDSRIWPETVR--SLRVPEHNGHLDLVVLMMLLGKQQINSIWV 298

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFG 347
           E G  +A + + + +VD +I+Y +  ++G        +P  LE+     +F      + G
Sbjct: 299 EAGPVLAGALLQAGVVDELIVYVAPKLLGSDARGLCVLPG-LEKLSEAPHFKFNEIRHVG 357

Query: 348 SDVCLEYI 355
            DVCL  I
Sbjct: 358 PDVCLHLI 365


>gi|53804252|ref|YP_114101.1| riboflavin biosynthesis protein RibD [Methylococcus capsulatus str.
           Bath]
 gi|53758013|gb|AAU92304.1| riboflavin biosynthesis protein RibD [Methylococcus capsulatus str.
           Bath]
          Length = 378

 Score =  179 bits (454), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 108/320 (33%), Positives = 171/320 (53%), Gaps = 9/320 (2%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM+ ALR +   +  T  NP V  ++V+   V+G G     G PHAE+ AL +A   A G
Sbjct: 21  FMAHALRLAEKGMYTTDPNPRVGSVVVQGNEVVGAGWHQRAGGPHAEIAALRDARGRAAG 80

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           AT YVTLEPCSH+GR+PPCA  +IE G+ RVV  + DP+ RV+G+GL+ L + GI V   
Sbjct: 81  ATVYVTLEPCSHHGRTPPCADALIEAGVHRVVAAMQDPNPRVAGQGLERLRRAGIEVSCG 140

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++  E +     ++ R       +  K+A+S D    +A   S  ITG  ++  VH LRA
Sbjct: 141 LLAREAERLNQGFVKRMRLGLPFVRSKLAMSLDGRTALASGDSKWITGDAARRDVHRLRA 200

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           +S  I+ GIGT+ ADDP LT R N   E   P R+ILD   +   ++++ +       ++
Sbjct: 201 RSSVIVTGIGTLRADDPFLTARPNDATELEQPARVILDSRLRSPPNARVFQQP--GRTLV 258

Query: 248 VTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           +T   DP    A       ++  +       D+  ++ +L       +L E GA++  + 
Sbjct: 259 LTTASDPRARQALLDVGAEVLEVEPDGAGRPDVAAVVRLLGRLEFNEVLFEAGASLNGAL 318

Query: 303 INSRLVDSIILYRSQIVIGE 322
           +++ +VD  ++Y +  V+G+
Sbjct: 319 LSAGVVDEWVVYLAPCVLGD 338


>gi|304413736|ref|ZP_07395180.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (N-terminal) and 5-amino-6-(5-phosphoribosylamino)
           uracil reductase (C-terminal) [Candidatus Regiella
           insecticola LSR1]
 gi|304283827|gb|EFL92221.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (N-terminal) and 5-amino-6-(5-phosphoribosylamino)
           uracil reductase (C-terminal) [Candidatus Regiella
           insecticola LSR1]
          Length = 381

 Score =  179 bits (454), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 177/343 (51%), Gaps = 33/343 (9%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG-- 64
           D ++M+ AL  +      T+ NP+V C+IV++G ++G G     G PHAE+ AL +A   
Sbjct: 9   DKKYMARALELALLGRFTTAPNPNVGCVIVREGKIVGEGYHVRAGEPHAEINALNKAKAK 68

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +EAR AT YVTLEPC H GR+PPC   +I  GI+RVVV + DP+ +VSGRG+  L Q GI
Sbjct: 69  DEARNATVYVTLEPCCHTGRTPPCTDALIAAGIKRVVVAMPDPNPQVSGRGIYQLQQAGI 128

Query: 125 IVDRM----MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           +VD +    ++++ +     +L R   +  ++ LK+A S D    MA   S  IT   ++
Sbjct: 129 VVDYIGSTTIKAKAEDINRGFLKRMRTRFPYLQLKMAASLDGRTAMASGESQWITSKEAR 188

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDP--- 226
             V   RAQSDAIL    T+LAD+P LT R   L               P RII+D    
Sbjct: 189 QDVQNFRAQSDAILSTSATILADNPALTVRHGALATSVQKIYPKHGLRQPTRIIIDSCNR 248

Query: 227 ----HFKLSLDSKIIKTALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
               H  ++     +   + A   I  +N +   L  +  +K I        DL+  +  
Sbjct: 249 VMPCHRVITEPGACLLARMTADQQIWPDNIEQLFLPPSEEEKRI--------DLRLFMME 300

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           L  R + S+ VE GA +A + +   +VD +ILY +  ++G+  
Sbjct: 301 LSRRQINSIWVEAGATLAGALLQIGVVDELILYLAPKLLGDNA 343


>gi|86609303|ref|YP_478065.1| riboflavin biosynthesis protein RibD [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557845|gb|ABD02802.1| riboflavin biosynthesis protein RibD [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 370

 Score =  179 bits (454), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 117/356 (32%), Positives = 185/356 (51%), Gaps = 11/356 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M   L  +R      S NP V+C+IV+   V+G GV    G PHAEV AL++AG  
Sbjct: 4   DQQWMERCLSLARSTPQRPSPNPRVSCVIVQGDRVVGEGVHPGAGQPHAEVLALQQAGSL 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGAT YV LEPC+HYGR+PPC + I+  GIRRVVV + DP+  V+G+G++ L + GI V
Sbjct: 64  ARGATLYVNLEPCNHYGRTPPCTEAILAAGIRRVVVGMQDPNPLVAGKGIRRLQEAGIDV 123

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E +     +    V ++    LK A++ D     A   S  I+   ++  VH 
Sbjct: 124 TVGVLERECQELNEGFAFAIVRQQCFGLLKYAMTLDGKSAAATGHSRWISNSPARQWVHQ 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            RA  DA++VG  TV  D+P LTCRL  LQ   P+R++L     L   + + +    AP 
Sbjct: 184 QRAWHDAVIVGSRTVWQDNPRLTCRLAELQGSQPLRVVLSRSLNLPPVAHLWQVE-EAPT 242

Query: 246 IIVTE--NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           +++TE     P+   +  K+ + +++       +   +L  RG  S L E G  +A + +
Sbjct: 243 LVITEAVATHPLWG-SLAKQGVELLHLPQVTPSRAAQVLFQRGCLSALWECGGTLAWAAL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLE-EGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
               +  +  + +  ++G    P+P+  EG  + N     + +   +  LE +G N
Sbjct: 302 KDGAIQKVAAFIAPKILGGAAAPTPVAGEGIPDVN-----QSWQLVEPRLETLGDN 352


>gi|330863855|emb|CBX73948.1| riboflavin biosynthesis protein ribD [Yersinia enterocolitica
           W22703]
          Length = 337

 Score =  179 bits (454), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 111/298 (37%), Positives = 161/298 (54%), Gaps = 14/298 (4%)

Query: 36  VKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
           ++DG ++G G     G PHAEV AL  AGE+ARGATAYVTLEPCSH+GR+PPCA  ++  
Sbjct: 1   MRDGEIVGEGYHLRAGEPHAEVHALRMAGEKARGATAYVTLEPCSHHGRTPPCADALLTA 60

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITL 154
           G++RVV  + DP+ +V+GRGL  L Q G+ VD  +M +E +     +L R      ++ L
Sbjct: 61  GVKRVVAAMQDPNPQVAGRGLYKLKQAGVEVDHGLMLAEAEAVNLGFLKRMRTGFPYLQL 120

Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214
           K+A S D    MA   S  IT   ++  V   RAQS AIL    TVLADDP LT R   L
Sbjct: 121 KMAASLDGRTAMASGESQWITSPQARQDVQRFRAQSSAILSTSATVLADDPALTVRWQEL 180

Query: 215 QEHS-----------PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
              +           P+RII+D H +++   K+I+     P  +     D        ++
Sbjct: 181 DAQTQALYPQDALRQPVRIIVDSHNRVTPQHKVIQQD--GPCWLARVETDEQSWPNNVEQ 238

Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            +   + +  DL  L+  L  R + S+ VE G   A + + + +VD +ILY +  ++G
Sbjct: 239 LLLPRHGNGVDLVLLMMQLGKRQINSVWVEAGPQFAGALLQAGVVDELILYIAPKLLG 296


>gi|332286796|ref|YP_004418707.1| putative riboflavin-specific deaminase [Pusillimonas sp. T7-7]
 gi|330430749|gb|AEC22083.1| putative riboflavin-specific deaminase [Pusillimonas sp. T7-7]
          Length = 374

 Score =  179 bits (453), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 185/357 (51%), Gaps = 15/357 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE- 65
           D  +M  AL  +   + +T+ NP VACLIV+DG ++  G T   G PHAE+ AL +A E 
Sbjct: 3   DEGWMRQALHLAESVLYITAPNPRVACLIVRDGRLLAEGATRQAGGPHAEIVALRQAAER 62

Query: 66  --EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
             +  GAT YVTLEPCSHYGR+PPC   +I     RVV+ + DP+  V G+G+  L   G
Sbjct: 63  GIDTAGATVYVTLEPCSHYGRTPPCVDALIAARPARVVIAMGDPNPLVHGQGIAKLRATG 122

Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   + +E  + ++  ++ R   K   + LK+A S D  I +A   S  ITG  ++  
Sbjct: 123 IAVTTDICTEEALAINPGFVARMTRKTPWLWLKLASSLDGRIALANGQSQWITGTAARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H  RA+S  +L G+GTVLADDP++  R +      P++ I+D  F++   ++I      
Sbjct: 183 GHHWRARSCVVLSGVGTVLADDPQMNVR-HVETARPPIKAIVDTRFQVMEQARIFDG--- 238

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298
            P  + T   DP        +N+ ++         DL  L+  L    +  + VE GA +
Sbjct: 239 TPTWVFTCVSDPEKVHRLADRNVQVVELPAAAGRVDLHALMRWLGEHDINEVHVEAGARL 298

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG-GIP--SPLEEGYLEKNFMCVRRDYFGSDVCL 352
           + + + ++  D +++Y + +++GEG G+    PL++    + F  +       DV L
Sbjct: 299 SGALLQAQCTDELLVYMAPVLLGEGIGMARMEPLQQLAQAQRFEFIHTACVAPDVRL 355


>gi|296269350|ref|YP_003651982.1| riboflavin biosynthesis protein RibD [Thermobispora bispora DSM
           43833]
 gi|296092137|gb|ADG88089.1| riboflavin biosynthesis protein RibD [Thermobispora bispora DSM
           43833]
          Length = 362

 Score =  179 bits (453), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 124/326 (38%), Positives = 181/326 (55%), Gaps = 11/326 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALE 61
           ++S D  +M  A+  +    G TS NP V C++V   G ++G G  AY G PHAE+ AL 
Sbjct: 1   MTSRDDHYMRRAIELAARGHGGTSPNPVVGCVVVDPTGEIVGEGFHAYAGGPHAEIVALR 60

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +AGE ARGATAYVTLEPC H GR+ PC   +++ G+ RVVV V DP+   +G G + L +
Sbjct: 61  QAGERARGATAYVTLEPCDHTGRTGPCTAALLQAGVARVVVAVPDPNPVAAG-GAETLLR 119

Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            G+ VD  ++ +E +     +LT    +R  +T K A + D     A   S  IT   ++
Sbjct: 120 HGVTVDVGVLAAEAERVNEEWLTYMRARRPFVTWKFAATIDGRSAAADGTSKWITSPEAR 179

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP-MRIILDPHFKLSLDSKIIKT 239
             VH LRA SDAI+ GIGTVLADDP LT R    +   P +R+++D   +    ++++  
Sbjct: 180 ADVHRLRAASDAIVAGIGTVLADDPRLTVRTPEPRRTRPVLRVVVDSGARTPAGARVLDG 239

Query: 240 ALLAPVIIVTEND-DPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAA 297
              AP ++   +D DP   L      + +   D   DL+ LL  L  R V S+L+EGG  
Sbjct: 240 E--APTLVAVADDADPPPHLG---DAVRLPRADGGLDLRALLAELHRRQVVSVLLEGGPT 294

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323
           +A SF+   LVD ++ Y +  ++G G
Sbjct: 295 LAGSFLREGLVDRVVGYLAPALLGAG 320


>gi|291287235|ref|YP_003504051.1| riboflavin biosynthesis protein RibD [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884395|gb|ADD68095.1| riboflavin biosynthesis protein RibD [Denitrovibrio acetiphilus DSM
           12809]
          Length = 387

 Score =  179 bits (453), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 167/304 (54%), Gaps = 9/304 (2%)

Query: 23  GLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G T TNP V  ++     ++ RG   AYGG PHAEV A++       G   YVTLEPCSH
Sbjct: 24  GYTKTNPVVGAIVANQSEILSRGWHMAYGG-PHAEVNAIDSCPVSTEGLDLYVTLEPCSH 82

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140
            G++PPC + I++ GIRRV + V DP+  V+G+G+++L   G+ +    ME      +  
Sbjct: 83  SGKTPPCVEKIVKSGIRRVFIGVVDPNPLVAGKGVEYLKNHGVEVYVGYMEDLCASIIED 142

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           ++    EK+ + T K A + D  I  +   S  I+   S+   H +RA SDAILVG+ TV
Sbjct: 143 FVKFITEKKPYYTFKTAQTLDGKIASSTGDSKWISSEASRTYTHYMRAVSDAILVGVNTV 202

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
           +ADDPEL  R+    +  P +I+LDP  ++ LD K+++ +  A  +I     +  +  A 
Sbjct: 203 IADDPELNVRMVK-SDRDPFKIVLDPKGRMPLDRKLVENS--ADKLIYVTCAESRITEAL 259

Query: 261 RKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
           R K  ++I        DL  L   LV R + ++++EGG   A  F ++ LVD + ++ + 
Sbjct: 260 RNKGADVITLGGDGSLDLNVLSDELVERSILNVMIEGGGTTAGKFFDAGLVDKVNIFIAM 319

Query: 318 IVIG 321
           +++G
Sbjct: 320 MIMG 323


>gi|34540017|ref|NP_904496.1| riboflavin biosynthesis protein RibD [Porphyromonas gingivalis W83]
 gi|34396328|gb|AAQ65395.1| riboflavin biosynthesis protein RibD [Porphyromonas gingivalis W83]
          Length = 330

 Score =  179 bits (453), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 116/326 (35%), Positives = 172/326 (52%), Gaps = 17/326 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++   G TS NP V  ++V  G +IG G     G PHAEV A+    + 
Sbjct: 4   DPLYMRRAIELAQNAEGFTSPNPLVGAVLVAHGRIIGEGYHHCAGMPHAEVIAINSVRDR 63

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           A  R +T YV+LEPCSHYG++PPCA+ I+  GI  VVV + DP   VSGRG++ L   G+
Sbjct: 64  ALLRESTLYVSLEPCSHYGKTPPCAELILREGIPHVVVAMLDPFPSVSGRGIKMLRDAGV 123

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM----AGCGSVPITGFIS 179
            V   ++  E +     +LT Q + R ++TLK A S D  I      A    V ++  ++
Sbjct: 124 SVQVGLLAEEAEELNRHFLTAQRQHRPYVTLKWAESSDGFIDALRDDASTPPVRLSTPLT 183

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
              VH  R   DAILVG  T L D+P LT R       +P+R++ D H  L     +   
Sbjct: 184 TRFVHHRRMIHDAILVGFRTALLDNPSLTVR--HWYGRNPLRVVTDRHLALPRHLTLFDG 241

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297
           ++  P ++ TE + P    +     ++ +  D     ++++L  L  RG+ SLLVEGGA 
Sbjct: 242 SV--PTLVFTEKEQP----SGYPSAVSFVRIDPSRPPVEQMLAELHARGIQSLLVEGGAC 295

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323
           +  SFI+S L D + +  S I++ EG
Sbjct: 296 ILRSFIDSGLYDDVRIEHSTIILNEG 321


>gi|148654182|ref|YP_001281275.1| riboflavin biosynthesis protein RibD [Psychrobacter sp. PRwf-1]
 gi|148573266|gb|ABQ95325.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Psychrobacter sp. PRwf-1]
          Length = 368

 Score =  179 bits (453), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 127/363 (34%), Positives = 188/363 (51%), Gaps = 34/363 (9%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P    D  +M+ A+  ++  +  T  NP+V C+IV + +++G G     G PHAEV AL 
Sbjct: 25  PPKKQDIYYMNLAIEEAKKGLFTTRPNPAVGCVIVNNNLIVGTGYHPQAGQPHAEVFALR 84

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           EA + A+GATAYVTLEPCSH GR+PPCAQ +I  G+ RVVV   DP+ +V+GRG+  L  
Sbjct: 85  EAKDNAKGATAYVTLEPCSHTGRTPPCAQALINSGVSRVVVAGLDPNPKVAGRGIAMLKA 144

Query: 122 KGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI V   + ++    L+  +L     +  ++ LKIA S D    MA   S  ITG  ++
Sbjct: 145 AGIEVTVGVSTQQAEQLNLGFLKAMRTQMPYVRLKIASSLDGRTAMASGESKWITGPAAR 204

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----QEHSPMRIILDPHFKLSLDSK 235
             V  LRA S AI+ G  T++ D+P L  R + L     +   P  ++LD   +  LD  
Sbjct: 205 EDVQKLRALSGAIITGSQTIIDDNPSLNVRSSQLGVALDKVPQPKIVVLD--RRQRLDQA 262

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEG 294
             K         V E+ D             +++ +  DL  LL  LV +  V  +LVE 
Sbjct: 263 HYK---------VFESPD------------TLLWAE-HDLTALLHQLVTQYQVQDVLVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVC 351
           G+ V+ SFI + LVD +I+Y++  ++G    P     ++  +L+  F  V     GSD+ 
Sbjct: 301 GSQVSGSFIEAGLVDELIVYQAPCLLGHSAKPMLNLTVDNLFLQHRFERVSVSEVGSDLK 360

Query: 352 LEY 354
           L Y
Sbjct: 361 LVY 363


>gi|254787586|ref|YP_003075015.1| riboflavin biosynthesis protein RibD [Teredinibacter turnerae
           T7901]
 gi|237683563|gb|ACR10827.1| riboflavin biosynthesis protein RibD [Teredinibacter turnerae
           T7901]
          Length = 363

 Score =  179 bits (453), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 117/332 (35%), Positives = 181/332 (54%), Gaps = 12/332 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S+ D  FM  ALR +   +  T+ NP V C++VKDG+VIG G     G PHAEV AL
Sbjct: 1   MDFSTADTVFMQQALRLAEEGLNTTTPNPRVGCVLVKDGVVIGEGYHHRAGEPHAEVNAL 60

Query: 61  EEA--GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           +     ++  GATAYVTLEPCSH G++ PCA  +++ GI R+V  ++DP+  V+GRGL  
Sbjct: 61  KSVIDRQQLAGATAYVTLEPCSHTGKTGPCADALVDAGIGRLVYAMEDPNPLVAGRGLDK 120

Query: 119 LSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L + G++VD  ++E E       ++ R       +  K+A+S D    M    S  ITG 
Sbjct: 121 LQRAGVVVDGPLLEEEALSLNLGFVKRMRTGLPLVRCKLAMSLDGRTAMRSGESKWITGP 180

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            ++  V  LRA+S AI+ G+ +VL DDP LT RL    E  P+R+I+D   ++   +++ 
Sbjct: 181 SARADVQKLRARSCAIITGVESVLLDDPLLTVRLPEC-ERQPIRVIVDSQLRVDPSAEVF 239

Query: 238 K---TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           +   T L+A        +  +      +K   + + D R+L  LL +        +L+E 
Sbjct: 240 RQPGTTLVATCDAAKALNSELDTWPLPEK---MGHVDLREL--LLGLAEHYQCNEVLLET 294

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           GA +A +F+ + LVD +I+Y +  ++G    P
Sbjct: 295 GAKLAGAFVAAGLVDELIVYVAAKLMGSDARP 326


>gi|167563753|ref|ZP_02356669.1| riboflavin biosynthesis protein RibD [Burkholderia oklahomensis
           EO147]
          Length = 369

 Score =  179 bits (453), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 113/320 (35%), Positives = 172/320 (53%), Gaps = 11/320 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
           M  AL  +   +  T+ NP V C+IV++ +VIG G T   G  HAEVQAL++A   G + 
Sbjct: 1   MQRALALAARGMYTTTPNPRVGCVIVQNDVVIGEGFTQPAGQDHAEVQALKDARTRGGDL 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           R AT YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L   GI V 
Sbjct: 61  RDATVYVTLEPCSHFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAMLRDAGIDVR 120

Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++  E       +++R    R  + +K A S D    +A   S  ITG  +++  H  
Sbjct: 121 CGLLTHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAARDDGHKW 180

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           RA++ AIL GIGTV  DDP+L  R  G+     P R+++D    + L +++++   L   
Sbjct: 181 RARACAILTGIGTVREDDPQLNVR--GVDTPRQPRRVLIDSRLDIPLSARLLEGGSLLIF 238

Query: 246 IIVTENDDPVLALAFRKKNINII-YCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
               +      A A R +   I+   + R   DL  +L +L  RG+  L VE G  +  S
Sbjct: 239 CGALDPQSEARADALRARGAEIVPLANARGKVDLPAMLAMLGERGINELHVEAGHKLNGS 298

Query: 302 FINSRLVDSIILYRSQIVIG 321
            +  R VD +++Y +  ++G
Sbjct: 299 LLRERCVDELLVYLAPSLLG 318


>gi|172059887|ref|YP_001807539.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria
           MC40-6]
 gi|171992404|gb|ACB63323.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria
           MC40-6]
          Length = 373

 Score =  179 bits (453), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 119/330 (36%), Positives = 175/330 (53%), Gaps = 17/330 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +   +  T+ NP V C+IVKDG VIG G T   G  HAEVQAL++A
Sbjct: 3   SDTDFAHMQRALTLAARGMYTTAPNPRVGCVIVKDGNVIGEGFTQPAGQDHAEVQALKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G +  G+T YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L 
Sbjct: 63  RARGHDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++ +E       +++R    R  + +K A S D    +    S  ITG  +
Sbjct: 123 DSGIDVRCGLLANEAGELNIGFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238
           +   H  RA++ AIL GIGTV  D+P LT R  G+     P R+++D    L LD+++++
Sbjct: 183 RLDGHAWRARACAILTGIGTVREDNPLLTVR--GIDTPRQPQRVLVDSRLDLPLDARLLE 240

Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291
               AP++I     D    V A   + +   I+         DL  +L  L  RGV  L 
Sbjct: 241 G---APLLIFCGRLDAAGEVRAKVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           VE G  +  S +  + VD +++Y +  ++G
Sbjct: 298 VEAGHKLNGSLLREQCVDELLVYLAPSLLG 327


>gi|296136861|ref|YP_003644103.1| riboflavin biosynthesis protein RibD [Thiomonas intermedia K12]
 gi|295796983|gb|ADG31773.1| riboflavin biosynthesis protein RibD [Thiomonas intermedia K12]
          Length = 366

 Score =  179 bits (453), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 118/327 (36%), Positives = 175/327 (53%), Gaps = 25/327 (7%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D RFM  AL  +   +  TS NP V C++V+DG V+G G T   G  HAEVQA+++A
Sbjct: 9   SEQDQRFMRRALDLAHSAMYRTSPNPRVGCVLVRDGQVLGEGATLAAGQDHAEVQAVKQA 68

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G E RGAT YVTLEPC+H+GR+PPCA  +   G+ RVV  + DP+  V+G+GLQ L 
Sbjct: 69  WERGHEVRGATTYVTLEPCAHHGRTPPCADLLATQGVARVVAALVDPNPLVAGQGLQRLR 128

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI VD  +   E +     +++R V     + LK+A S D +  +    S  IT   +
Sbjct: 129 DAGIQVDVGLFADEAREINLGFISRMVRGTPWVRLKVAASLDGVTALPNGASQWITSEAA 188

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIK 238
           +   H  RA++ A+L G+GTV ADDP+L  R   +Q    P+RI++D   +    +++++
Sbjct: 189 RADGHHWRARACAVLTGLGTVRADDPQLNVR--AVQTPRQPIRIVIDSRLECPPTARLLQ 246

Query: 239 TALLAPVIIV----TENDDPVLALAFRKKNINIIYCD------------CRDLKKLLTIL 282
           +A  +P+ IV     E   P LA A R   I ++                 DL+ L+ +L
Sbjct: 247 SA-DSPLWIVHALSPEQAAPRLA-ALRSAAIALLDLQDIALPADPDKPGKTDLRALMQVL 304

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVD 309
             RG+  L  E G  +  S + + +VD
Sbjct: 305 GQRGINELHCEAGEKLNGSLLRAGVVD 331


>gi|289423250|ref|ZP_06425061.1| riboflavin biosynthesis protein RibD [Peptostreptococcus anaerobius
           653-L]
 gi|289156350|gb|EFD05004.1| riboflavin biosynthesis protein RibD [Peptostreptococcus anaerobius
           653-L]
          Length = 433

 Score =  179 bits (453), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 133/422 (31%), Positives = 205/422 (48%), Gaps = 82/422 (19%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  ++  +   S NP V  +IVKD  +IG+G     G  HAE  A+++    
Sbjct: 10  DQHYMKIALDLAKRGIARVSPNPLVGAVIVKDDQIIGKGYHEKYGGLHAERNAIKDYKNR 69

Query: 67  A--------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           A         GAT YVTLEPC HYG++PPC + IIE  I+RVVV   DP+  V+G+G++ 
Sbjct: 70  AINDPNLTIEGATMYVTLEPCCHYGKTPPCTEAIIENKIKRVVVASLDPNPLVAGKGVKI 129

Query: 119 LSQKGIIVD-----RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP 173
           L + GI VD        + + +IF H Y+   + KR  +T+K A++ D  +      S  
Sbjct: 130 LEEVGIEVDIGVLKDEADRQNRIFRH-YI---INKRPLVTMKYAMTMDGKLATHTGKSKW 185

Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL---NGLQE----------HSPM 220
           ITG  ++ +VHL R ++ AI+VG+GTVLADDP L CRL   +G  +           +P+
Sbjct: 186 ITGHDARRRVHLDRLRNMAIMVGVGTVLADDPSLNCRLEDFDGFDKIKKDYSIEGLRNPI 245

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR------------------K 262
           R+++D   +   +SKI+ +A     II T ++D     A+                   K
Sbjct: 246 RVVVDSSLRTPFNSKIVTSAKDIKTIIFTISEDMEKIRAYEDRDCIVIKTKKKLYRSIGK 305

Query: 263 KNINI-----------------IYCDCR------DLKKLLTILVGRGVTSLLVEGGAAVA 299
           K + I                 +Y + +      DL+ L+ IL   G+ S+L+EGG+ + 
Sbjct: 306 KQVQIGQEIQMDQDGHKYQEYQVYQERQGERFVVDLEDLVEILGQMGIDSILLEGGSQLN 365

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPL--------EEGYLEKNFMCVRRDYFGSDVC 351
            S + S +VD +  Y    + G     SP+        E+ Y+ +N   +  D  G D+ 
Sbjct: 366 FSALESGIVDRVQAYIGPKIFGGEKAKSPIGGIGVDLPEDAYMLEN---IEFDSVGKDIL 422

Query: 352 LE 353
           LE
Sbjct: 423 LE 424


>gi|282896327|ref|ZP_06304349.1| Riboflavin biosynthesis protein RibD [Raphidiopsis brookii D9]
 gi|281198823|gb|EFA73702.1| Riboflavin biosynthesis protein RibD [Raphidiopsis brookii D9]
          Length = 376

 Score =  179 bits (453), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 111/335 (33%), Positives = 174/335 (51%), Gaps = 5/335 (1%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           FDA  M   L+ +R  +G TS NP V  ++VKDG ++G G     G PH EV AL  AGE
Sbjct: 16  FDALMMQRCLQLARLALGRTSPNPLVGAVVVKDGEIVGEGFHPRAGEPHGEVFALRAAGE 75

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            ARGAT YV+LEPC+HYGR+PPC+  +I  G+ +VVV + DP+  V+G G+  L   GI 
Sbjct: 76  RARGATIYVSLEPCNHYGRTPPCSLSLINAGVAKVVVGMVDPNPLVAGAGIARLRAAGIE 135

Query: 126 VDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   +E E  +     ++ R + ++    LK A++ D  I      S  IT   ++++VH
Sbjct: 136 VIVGVEEEACQKLNEGFVYRILHQKPLGILKYAMTLDGKIASNSGHSTWITNNQARSEVH 195

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LRA  DA++VG  TV  D+P+LT        ++P+R+++     L  ++ +  T +   
Sbjct: 196 QLRAACDAVIVGGNTVRRDNPQLTTHQQA--GYNPLRVVMSASLNLPENAHLWDTGVAPT 253

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           +++  E   P       +K + ++         ++  L  RG  ++L E G  +A   I 
Sbjct: 254 LVLTQEGSSPNFQQMLLQKGVEVLELPLLTPGLVMAHLYERGFCTVLWECGGTLAARAIA 313

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
              V  ++ + +  +I  GGI +P   G L  N M
Sbjct: 314 ENAVQKVLAFIAPKII--GGIYAPTPVGDLGLNSM 346


>gi|169797510|ref|YP_001715303.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Acinetobacter baumannii AYE]
 gi|213155676|ref|YP_002317721.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
           AB0057]
 gi|215484945|ref|YP_002327186.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
           AB307-0294]
 gi|301346214|ref|ZP_07226955.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
           AB056]
 gi|301512963|ref|ZP_07238200.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
           AB058]
 gi|301595094|ref|ZP_07240102.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
           AB059]
 gi|332851510|ref|ZP_08433507.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
           6013150]
 gi|332866790|ref|ZP_08437194.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
           6013113]
 gi|169150437|emb|CAM88334.1| bifunctional protein [Includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (Riboflavin-specific deaminase);
           5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
           reductase) ] [Acinetobacter baumannii AYE]
 gi|213054836|gb|ACJ39738.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
           AB0057]
 gi|213986529|gb|ACJ56828.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
           AB307-0294]
 gi|332729963|gb|EGJ61294.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
           6013150]
 gi|332734398|gb|EGJ65518.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
           6013113]
          Length = 361

 Score =  179 bits (453), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 118/329 (35%), Positives = 183/329 (55%), Gaps = 29/329 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++  +  T  NP+V C+IVKD  VIG G     G PHAEV AL +AGE+
Sbjct: 7   DQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDNQVIGEGFHPKAGQPHAEVFALRQAGEQ 66

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPC+HYGR+PPCA+ +++  +++VVV   DP+  V+G+G+Q L   GI V
Sbjct: 67  AQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILKNAGIEV 126

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  + E         +L        ++ LK+A S D    MA   S  ITG  ++  V  
Sbjct: 127 EIGICEDLAAQLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAARQDVQH 186

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS--------PMRIILDPHFKLSLDSKII 237
            RA S A++ GI TV+ADD    C+LN    H+        P R+ILD   +L L +KI+
Sbjct: 187 WRAISGAVITGIDTVIADD----CQLNVRSLHNIDIETVVQPKRVILDRRGRLPLTAKIL 242

Query: 238 KTALLAPVIIVTENDDPVLALA-FRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVE 293
                       EN + V+ +  +R++  ++ +I  + + LK LL  L  +  +  +L+E
Sbjct: 243 ------------ENPETVMVMGPYRQELADLGVIQLEIQPLKTLLQTLSKQYQIYDVLIE 290

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGE 322
            GA ++ +F+   L+D +I Y +  ++G+
Sbjct: 291 AGATLSSAFLQEGLIDEMISYVAPTLLGQ 319


>gi|239637909|ref|ZP_04678870.1| riboflavin biosynthesis protein RibD [Staphylococcus warneri
           L37603]
 gi|239596472|gb|EEQ79008.1| riboflavin biosynthesis protein RibD [Staphylococcus warneri
           L37603]
          Length = 347

 Score =  178 bits (452), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 110/317 (34%), Positives = 163/317 (51%), Gaps = 9/317 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           ++FM+ A++ ++   G T  NP V  ++VKDG ++G G     G  HAEVQAL+ A  EA
Sbjct: 2   SKFMNYAIQLAQMVDGQTGVNPPVGSVVVKDGRIVGIGAHLRKGDKHAEVQALDMAQSEA 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            GAT YV+LEPC+H+G +PPC   IIE GI +V+  V   D  +  +G   L   GI V+
Sbjct: 62  NGATIYVSLEPCTHHGSTPPCVDKIIEAGIHKVIYAV--KDTTLISKGDDILKNAGIEVE 119

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
               +        + T +      +T+K++ S D         S  IT    K  V+ LR
Sbjct: 120 FQYNAVAAQLYQDFFTAKRNGIPELTVKVSASLDGKQATDDGESKWITNKEVKKDVYQLR 179

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
              DA+L G  TV ADDP  T R+   +   P+R+IL    KL  + ++      +P+ I
Sbjct: 180 HSHDAVLTGRKTVEADDPLYTTRIADGKH--PIRVILSKSGKLDFNQQLFHD-YASPIWI 236

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            TEN +    L     N+ IIY +  D+K +L  L  +G+  LLVE G  +   F+ S  
Sbjct: 237 YTENKN----LKVDNSNVTIIYMEQCDIKSILKDLYQKGIGKLLVEAGPEITSEFLQSDH 292

Query: 308 VDSIILYRSQIVIGEGG 324
           +D ++LY +  +IG  G
Sbjct: 293 LDHLVLYFAPKIIGGSG 309


>gi|239502078|ref|ZP_04661388.1| pyrimidine deaminase [Acinetobacter baumannii AB900]
          Length = 361

 Score =  178 bits (452), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 118/331 (35%), Positives = 183/331 (55%), Gaps = 29/331 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++  +  T  NP+V C+IVKD  +IG G     G PHAEV AL EAGE+
Sbjct: 7   DQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDNQLIGEGFHPKAGQPHAEVFALREAGEQ 66

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPC+HYGR+PPCA+ +++  +++VVV   DP+  V+G+G+Q L   GI V
Sbjct: 67  AQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILENAGIEV 126

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  + E         +L        ++ LK+A S D    MA   S  ITG  ++  V  
Sbjct: 127 EIGICEDLAAQLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAARQDVQH 186

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS--------PMRIILDPHFKLSLDSKII 237
            RA S A++ GI TV+ADD    C+LN    H+        P R+ILD   +L L +KI+
Sbjct: 187 WRAISGAVITGIETVIADD----CQLNVRSLHNVDIETVAQPKRVILDRRGRLPLTAKIL 242

Query: 238 KTALLAPVIIVTENDDPVLALA-FRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVE 293
                       EN + V+ +  +R++  ++ +I  + + LK LL  L  +  +  +L+E
Sbjct: 243 ------------ENPETVMVMGPYRQELADLGVIQLEIQPLKTLLQTLSKQYQIYDVLIE 290

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            GA ++ +F+   L+D +I Y +  ++G+  
Sbjct: 291 AGATLSSAFLQEGLIDEMISYVAPTLLGQSA 321


>gi|237737703|ref|ZP_04568184.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium mortiferum ATCC 9817]
 gi|229419583|gb|EEO34630.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium mortiferum ATCC 9817]
          Length = 358

 Score =  178 bits (452), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 124/362 (34%), Positives = 200/362 (55%), Gaps = 19/362 (5%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D ++M+ AL  +    G  + NP V  ++VKDG+V+G G     G PHAEV ALE AGE
Sbjct: 1   MDKKYMARALELAALGEGSVNPNPLVGAVVVKDGVVVGEGYHKKYGGPHAEVFALEMAGE 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A GA  YVTLEPCSHYG++PPCA+ IIE GI+R +V   DP+  VSGRG++ L   GI 
Sbjct: 61  KAYGADIYVTLEPCSHYGKTPPCAKKIIEMGIKRCIVASLDPNPLVSGRGIKMLQDAGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V  +ME E K     ++    EK+S++ LK  ++ D  I      S  IT  +++ +V 
Sbjct: 121 VVTGVMEREAKELNRVFMKYISEKKSYLFLKCGITLDGKIATKTGNSKWITNELAREKVQ 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
            LR +   I+VGI TVL DDP LT R+ NG     P RI++DP  ++ L+SKI+      
Sbjct: 181 RLRNRYMGIMVGINTVLKDDPSLTARIENG---RDPYRIVIDPKLEIPLESKIVNFEDGK 237

Query: 244 PVIIVTEND---DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
            VII ++ +   + +  L  ++  +  +  D  ++ ++L      G+  +++EGG+ +  
Sbjct: 238 SVIITSQENRESEKIKILEEKRVRVEYLEGDEFEVSEILKKTGELGIDGIILEGGSYLIS 297

Query: 301 SFINSRLVDSIILYRSQIVIGE--------GGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
                  +D   ++ +  ++G+        G     + +G+  KN   V+ + +G++V +
Sbjct: 298 KAFKENAIDGGEIFIAPKILGDSEAISFVRGFSVENIADGFELKN---VKINSYGNNVSM 354

Query: 353 EY 354
           E+
Sbjct: 355 EF 356


>gi|78065536|ref|YP_368305.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Burkholderia sp. 383]
 gi|77966281|gb|ABB07661.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Burkholderia sp.
           383]
          Length = 373

 Score =  178 bits (452), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 120/330 (36%), Positives = 173/330 (52%), Gaps = 17/330 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +   +  T+ NP V C+IVKDG VIG G T   G  HAEVQAL++A
Sbjct: 3   SDIDFAHMQRALTLAARGMYTTAPNPRVGCVIVKDGEVIGEGFTQPAGQDHAEVQALKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G +  G+T YVTLEPCSH+GR+PPCA  +IE  + +VV  ++DP+ +VSGRGL  L 
Sbjct: 63  RARGYDVAGSTVYVTLEPCSHFGRTPPCANALIEARVAKVVAAMEDPNPQVSGRGLGMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++  E       +++R    R  + +K A S D    +    S  ITG  +
Sbjct: 123 DAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238
           +   H  RA++ AIL GIGTV  D+P LT R  G+     P RI++D    L LD+++++
Sbjct: 183 RLDGHAWRARACAILTGIGTVREDNPLLTVR--GIDTPRQPQRILVDSRLDLPLDARLLE 240

Query: 239 TALLAPVIIVTENDDPVLAL---AFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291
               AP++I     D    L     + +   I+         DL  +L  L  RGV  L 
Sbjct: 241 G---APLLIFCGRLDAASELRANVLKARGAEIVPIANAQGKVDLPAMLAALGARGVNELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           VE G  +  S +  + VD +++Y +  ++G
Sbjct: 298 VEAGHKLNGSLLREQCVDELLVYLAPSLLG 327


>gi|213691299|ref|YP_002321885.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213522760|gb|ACJ51507.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457366|dbj|BAJ67987.1| riboflavin biosynthesis protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 366

 Score =  178 bits (452), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 114/328 (34%), Positives = 174/328 (53%), Gaps = 8/328 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DA++M  A+  ++   G  + NP V  +IVKD  +IG+G     G  HAE  AL    + 
Sbjct: 3   DAQYMGLAIELAKRGAGYVNPNPMVGAVIVKDDRIIGQGYHEMFGGLHAERNALRHCTQS 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GAT YVTLEPC HYG++PPC + I+E GI RVVV   D +  VSG+G++ L   GI V
Sbjct: 63  PAGATLYVTLEPCCHYGKTPPCTEAIVESGIARVVVGTLDCNPVVSGKGVRMLEDHGIRV 122

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  ++  E +  +  +         ++ +K A++ D  I      S  I+G  S+ +VH 
Sbjct: 123 DVGVLADECRHLIRVFSKYITTHTPYVIMKYAMTMDGKIATHTNQSRWISGEESRRRVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    A++VG+ TV+ DDP LTCR+      +P+R++ D   +  L S+I++TA     
Sbjct: 183 LRRSVAAVMVGVNTVIEDDPLLTCRM--AHGRNPVRVVCDTRLRTPLTSRIVQTANDVRT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T  DD   A  +R+    I+      D  DL  ++  L    + S+L+EGG+A+  S
Sbjct: 241 YIATACDDERKAEDYRRHGCEILAVGRKGDHVDLADVVRRLGDMQMDSVLLEGGSAMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPL 329
            +  R+VD   +Y +  + G G   SP+
Sbjct: 301 ALEQRIVDEAHVYIAPKIFG-GTAKSPV 327


>gi|169634649|ref|YP_001708385.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Acinetobacter baumannii SDF]
 gi|169153441|emb|CAP02583.1| bifunctional protein [Includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (Riboflavin-specific deaminase);
           5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
           reductase) ] [Acinetobacter baumannii]
          Length = 361

 Score =  178 bits (452), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 118/331 (35%), Positives = 183/331 (55%), Gaps = 29/331 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++  +  T  NP+V C+IVKD  VIG G     G PHAEV AL +AGE+
Sbjct: 7   DQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDNQVIGEGFHPRAGQPHAEVFALRQAGEQ 66

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPC+HYGR+PPCA+ +++  +++VVV   DP+  V+G+G+Q L   GI V
Sbjct: 67  AQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILKNAGIEV 126

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  + E         +L        ++ LK+A S D    MA   S  ITG  ++  V  
Sbjct: 127 EIGICEDLAAQLNQGFLKAMSSGMPYVRLKVASSLDGRTAMASGESKWITGSAARQDVQH 186

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS--------PMRIILDPHFKLSLDSKII 237
            RA S A++ GI TV+ADD    C+LN    H+        P R+ILD   +L L +KI+
Sbjct: 187 WRAISGAVITGIETVIADD----CQLNVRPLHNVDIETVAQPKRVILDRRGRLPLTAKIL 242

Query: 238 KTALLAPVIIVTENDDPVLALA-FRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVE 293
                       EN + V+ +  +R++  ++ +I  + + LK LL  L  +  +  +L+E
Sbjct: 243 ------------ENPETVMVMGPYRQELADLGVIQLEIQPLKTLLQTLSKQYQIYDVLIE 290

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            GA ++ +F+   L+D +I Y +  ++G+  
Sbjct: 291 AGATLSSAFLQEGLIDEMISYVAPTLLGQSA 321


>gi|282900583|ref|ZP_06308525.1| Riboflavin biosynthesis protein RibD [Cylindrospermopsis
           raciborskii CS-505]
 gi|281194383|gb|EFA69338.1| Riboflavin biosynthesis protein RibD [Cylindrospermopsis
           raciborskii CS-505]
          Length = 385

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/327 (33%), Positives = 170/327 (51%), Gaps = 3/327 (0%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S FDA  M   L  +R  +G TS NP V  ++VKDG ++G G     G PHAEV AL  A
Sbjct: 14  SEFDALMMQRCLELARLALGRTSPNPLVGAVVVKDGEIVGEGFHPRAGEPHAEVFALRAA 73

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGAT YV+LEPC+HYGR+PPC+  +I  G+ +VVV + DP+  V+G G+  L   G
Sbjct: 74  GERARGATIYVSLEPCNHYGRTPPCSLSLINAGVAKVVVGMVDPNPLVAGAGIARLRAAG 133

Query: 124 IIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   +E E  +     ++ R + ++    LK A++ D  I      S  IT   ++++
Sbjct: 134 IEVIIGVEEEACQKLNEGFVYRVLHQKPLGILKYAMTLDGKIASNSGHSTWITNSQARSE 193

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LRA  DA++VG  TV  D+P LT        ++P+R+++     L  ++ +  T + 
Sbjct: 194 VHQLRAACDAVIVGGNTVRRDNPHLTTHQQ--TGYNPLRVVMSASLNLPENAHLWDTRVA 251

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             +++  E   P       +K + ++         ++  L  RG  ++L E G  +A   
Sbjct: 252 PTLVLTQEGSSPDFQQMLLQKGVEVLELPLLTPGLVMAHLYERGFCTVLWECGGTLAARA 311

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPL 329
           I    V  ++ + +  +IG    P+P+
Sbjct: 312 IAENAVQKVLAFIAPKIIGGIDAPTPV 338


>gi|268611447|ref|ZP_06145174.1| riboflavin biosynthesis protein [Ruminococcus flavefaciens FD-1]
          Length = 373

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 133/372 (35%), Positives = 190/372 (51%), Gaps = 38/372 (10%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL---EEAGEE 66
           +M  AL  ++  +G TS NP V  +IV+DG +IG G     G  HAE  A    +E G +
Sbjct: 6   YMRRALELAQRGMGFTSPNPMVGAVIVRDGKIIGEGWHKKYGELHAERTAFAYCDENGID 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GA  YVTLEPC H+G+ PPC   +IE GI+RV +   DP+  VSG+G++ L + GI +
Sbjct: 66  CTGADMYVTLEPCCHHGKQPPCTDAVIEHGIKRVFIGSADPNPMVSGKGVKILREHGIEV 125

Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
            + ++  E      IF H ++T        +T+K A++ D  I      S  ITG  ++ 
Sbjct: 126 TEDVLREECDAINGIFFH-WITHNW---PFVTVKYAMTLDGKIATHTGESKWITGEEARL 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V   R +  AI+VGIGTVLADDP LTCRL   ++  P+RII D   ++ LDS I+KTA 
Sbjct: 182 DVQRERLRHSAIMVGIGTVLADDPMLTCRLENGRD--PIRIICDSRLRIPLDSNIVKTAK 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----------DLKKLLTILVGRGVTSL 290
             P II   N +        +K   +    CR           DL  L+  L    + S+
Sbjct: 240 DVPTIIAMTNFNKKDDREKCEKRHILEEMGCRIISTKANCGHVDLYTLMLKLREMKIDSI 299

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG--------EG-GIPSPLEEGYLEKNFMCV 341
           LVEGG  +  S    +LV  +  Y +  + G        EG GIP+P  + Y+ +N   +
Sbjct: 300 LVEGGGELNDSLFRHKLVQRVKAYIAPKIFGGKDAKSPVEGWGIPTP-NDAYMIENTQ-I 357

Query: 342 RRDYFGSDVCLE 353
           RR   G D+ +E
Sbjct: 358 RR--IGEDILIE 367


>gi|307129900|ref|YP_003881916.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Dickeya dadantii 3937]
 gi|306527429|gb|ADM97359.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Dickeya dadantii 3937]
          Length = 370

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 121/339 (35%), Positives = 175/339 (51%), Gaps = 28/339 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL  +R     TS NP+V C+IV+D  ++G G     G PHAEV AL  AG++
Sbjct: 6   DEFYMARALELARRGRFTTSPNPNVGCVIVRDDEIVGEGYHQKAGEPHAEVHALRMAGDK 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 66  ARGATAYVTLEPCSHHGRTPPCADALLAAGVARVVAAMQDPNPQVAGRGLHRLQQAGIEV 125

Query: 127 DR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
               +ME   KI    +L R      ++ LK+  S D    MA   S  IT   S+  V 
Sbjct: 126 RHSVLMEQAEKIN-RGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSQQSRQDVQ 184

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLD 233
             RAQS AIL    TVLADDP LT R + L   +           P+R+I+D   +++  
Sbjct: 185 RFRAQSSAILSSSATVLADDPSLTVRWSELDADTQRFYPESAVRQPVRVIVDSQSRVTPQ 244

Query: 234 SKIIKTALLAPVIIVTENDDPV------LALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
            ++I       +    ++  P       L +      I        DL  L+  L  R +
Sbjct: 245 HRLISQPGQTWLARSRQDGQPWPDGVEQLDMPLHGGGI--------DLVALMMTLGKRQI 296

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            ++ VE G  +A + + + +VD +I+Y +  ++G+   P
Sbjct: 297 NTVWVEAGPRLAGALLQAGVVDELIVYLAPKLLGDAARP 335


>gi|115350875|ref|YP_772714.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria AMMD]
 gi|115280863|gb|ABI86380.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Burkholderia
           ambifaria AMMD]
          Length = 373

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 119/330 (36%), Positives = 175/330 (53%), Gaps = 17/330 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +   +  T+ NP V C+IVKDG VIG G T   G  HAEVQAL++A
Sbjct: 3   SDTDFAHMQRALTLAARGMYTTAPNPRVGCVIVKDGNVIGEGFTQPAGQDHAEVQALKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G +  G+T YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L 
Sbjct: 63  RARGHDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++ +E       +++R    R  + +K A S D    +    S  ITG  +
Sbjct: 123 DAGIDVRCGLLANEAGELNIGFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238
           +   H  RA++ AIL GIGTV  D+P LT R  G+     P R+++D    L LD+++++
Sbjct: 183 RLDGHAWRARACAILTGIGTVREDNPLLTVR--GIDTPRQPQRVLVDSRLDLPLDARLLE 240

Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291
               AP++I     D    V A   + +   I+         DL  +L  L  RGV  L 
Sbjct: 241 G---APLLIFCGRLDAAGEVRAKVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           VE G  +  S +  + VD +++Y +  ++G
Sbjct: 298 VEAGHKLNGSLLREQCVDELLVYLAPSLLG 327


>gi|332202099|gb|EGJ16168.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           GA41317]
          Length = 366

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/320 (33%), Positives = 173/320 (54%), Gaps = 7/320 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G  HAE  AL+   E 
Sbjct: 3   DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGSHAERNALKNCRES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + V
Sbjct: 63  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A++ D  I      S  IT   ++  VH 
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMTMDGKIATKTNQSKWITEEEARKHVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIG 321
            +  ++VD + +Y +  + G
Sbjct: 301 ALEQQIVDELKIYIAPKIFG 320


>gi|85712650|ref|ZP_01043696.1| Riboflavin-specific deaminase/reductase [Idiomarina baltica OS145]
 gi|85693500|gb|EAQ31452.1| Riboflavin-specific deaminase/reductase [Idiomarina baltica OS145]
          Length = 373

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/327 (34%), Positives = 174/327 (53%), Gaps = 16/327 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  +R     T  NP+V C+IVKD  ++G G     G PHAEV AL +AG +
Sbjct: 10  DHLYMHRALELARKGRFTTGPNPAVGCVIVKDASIVGEGWHQKAGEPHAEVFALRQAGTQ 69

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+ ATAYVTLEPCSH GR+PPC   +I   + RVV+ + DP+  VSGRG+  L    I V
Sbjct: 70  AKHATAYVTLEPCSHQGRTPPCVDALINAEVARVVIAMQDPNPVVSGRGIHKLHDADIEV 129

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              + E+  +     ++ R   +  ++ +K+A S D    ++   S  ITG  ++  V +
Sbjct: 130 RVGLFETAARALNPGFIHRMQTQLPYVRVKLASSLDGRTALSNGVSQWITGAAARADVQV 189

Query: 186 LRAQSDAILVGIGTVLADDPELTCR----LNGLQE----HSPMRIILDPHFKLSLDSKII 237
            RAQ+DAIL G  TVL D+P L  R     NG+++      P+R+I+D   ++  D ++ 
Sbjct: 190 WRAQADAILTGADTVLVDNPRLNVRPEQWPNGIEKPLFFKQPVRVIIDGKNRIHDDLRLF 249

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEG 294
           +     PV +V   + P  A   R  +  I   D +   DL   L  L  R +  +  E 
Sbjct: 250 EVE--TPVFVVRTTEAP--ASRHRHCHEIIAKADSQGRVDLHDALKELALREINLVWTEC 305

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321
           GA +A +  N+++V+ ++ Y++  V+G
Sbjct: 306 GAQLAGALFNAQVVNELVYYQANKVLG 332


>gi|289424953|ref|ZP_06426732.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           SK187]
 gi|289154652|gb|EFD03338.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           SK187]
 gi|313763122|gb|EFS34486.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL013PA1]
 gi|313793372|gb|EFS41430.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL110PA1]
 gi|313800984|gb|EFS42252.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL110PA2]
 gi|313812185|gb|EFS49899.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL025PA1]
 gi|313814722|gb|EFS52436.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL059PA1]
 gi|313828278|gb|EFS65992.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL063PA2]
 gi|313838062|gb|EFS75776.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL086PA1]
 gi|314914448|gb|EFS78279.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL005PA4]
 gi|314917772|gb|EFS81603.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL050PA1]
 gi|314919502|gb|EFS83333.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL050PA3]
 gi|314930094|gb|EFS93925.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL067PA1]
 gi|314957061|gb|EFT01166.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL027PA1]
 gi|314957695|gb|EFT01798.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL002PA1]
 gi|314963428|gb|EFT07528.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL082PA1]
 gi|314968931|gb|EFT13029.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL037PA1]
 gi|315077277|gb|EFT49339.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL053PA2]
 gi|315079956|gb|EFT51932.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL078PA1]
 gi|315097872|gb|EFT69848.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL059PA2]
 gi|315100736|gb|EFT72712.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL046PA1]
 gi|315109263|gb|EFT81239.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL030PA2]
 gi|327451322|gb|EGE97976.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL087PA3]
 gi|327451701|gb|EGE98355.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL092PA1]
 gi|327452164|gb|EGE98818.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL083PA2]
 gi|328752420|gb|EGF66036.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL087PA1]
 gi|328755093|gb|EGF68709.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL025PA2]
          Length = 331

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/297 (37%), Positives = 159/297 (53%), Gaps = 28/297 (9%)

Query: 28  NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87
           NP V C+IV +  VIG+G     G PHAEV+AL +AG++ARGATA VTLEPC H GR+ P
Sbjct: 25  NPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDARGATAVVTLEPCHHTGRTGP 84

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT-RQV 146
           C+  +++ GI RVV+   DP+   SG G QWL   G+ V   + SE    L+A  T  Q+
Sbjct: 85  CSHALVDAGIARVVIAQSDPNPVASG-GEQWLRTHGVEVVTGVLSEEATALNADWTFSQI 143

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
            +R  +  K A S D         S  ITG  +++QV L RA+  AI+VG GT LAD+P 
Sbjct: 144 HRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNPR 203

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
           LT RL G+  H P+R+++                            +P      R  + +
Sbjct: 204 LTVRLPGV-THQPLRVVVG-------------------------MREPPAGCHLRDDSAS 237

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            ++    D  ++L +L  RGV  + +EGG  +A +F+ + LVD +I + +  V+G G
Sbjct: 238 TLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLVDEVIAHMAPTVLGGG 294


>gi|86147437|ref|ZP_01065749.1| Pyrimidine reductase, riboflavin biosynthesis [Vibrio sp. MED222]
 gi|85834730|gb|EAQ52876.1| Pyrimidine reductase, riboflavin biosynthesis [Vibrio sp. MED222]
          Length = 364

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/330 (33%), Positives = 178/330 (53%), Gaps = 27/330 (8%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
            MS A++ ++  +  T+ NP+V C+IV+ DG ++G G  A  G PHAEV A+  AG++A+
Sbjct: 1   MMSRAIQLAKRGIYTTAPNPNVGCVIVQTDGQIVGEGFHAKAGEPHAEVHAMRMAGDKAK 60

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127
           GATAYVTLEPCSHYGR+PPCA+ +I+  + +V+  + DP+ +V+GRG++ L   GI V+ 
Sbjct: 61  GATAYVTLEPCSHYGRTPPCAEGLIKAQVAKVICAMQDPNPKVAGRGIKMLRDAGIDVEI 120

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++E +      A++ R       + LK+A S D    +    S  IT   ++  V   R
Sbjct: 121 GLLEQDALDLNPAFIKRMQTGMPFVQLKMAASLDGQTALENGQSQWITSPEARRDVQNYR 180

Query: 188 AQSDAILVGIGTVLADDPELTCRL----NGLQEH-------SPMRIILDPHFKLSLDSKI 236
           A+S A+L    TV+ D+  L  R     + +++H        P+R+ILD   +L  + K+
Sbjct: 181 AKSGAVLSTSQTVIDDNASLNVRWAELPSSIKDHYAEDELRQPIRVILDRQNQLRPELKL 240

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEG 294
            +T               VL +A    +I +   +    DL  L+  L    +  + VE 
Sbjct: 241 FQTPT------------SVLRVAEASADIEVGTTEVGQLDLHDLMRQLPANHIDHIWVEA 288

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           GA +A S I +RLVD +ILY +  ++G  G
Sbjct: 289 GATLAKSLIEARLVDELILYLAPKLMGSDG 318


>gi|271499575|ref|YP_003332600.1| riboflavin biosynthesis protein RibD [Dickeya dadantii Ech586]
 gi|270343130|gb|ACZ75895.1| riboflavin biosynthesis protein RibD [Dickeya dadantii Ech586]
          Length = 370

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 122/333 (36%), Positives = 176/333 (52%), Gaps = 24/333 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL  +R     T+ NP+V C+IV+DG ++G G     G PHAEV AL  AG++
Sbjct: 6   DEFYMARALELARRGRFTTAPNPNVGCVIVRDGEIVGEGYHQKAGEPHAEVHALRMAGDK 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 66  ARGATAYVTLEPCSHHGRTPPCADALVAAGVARVVAAMQDPNPQVAGRGLHRLQQAGIAV 125

Query: 127 DR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
               +M+   KI    +L R      ++ LK+  S D    MA   S  IT   S+  V 
Sbjct: 126 QHGVLMDQAEKIN-RGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQSRQDVQ 184

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLD 233
             RAQS AIL    TVLADDP LT R + L   +           P+R+I+D   +++  
Sbjct: 185 RFRAQSAAILSSSATVLADDPSLTVRWSELDADTQRLYPQSAVRQPVRVIVDSQSRVTPQ 244

Query: 234 SKII----KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
            +++    +T L           D V  L        I      DL  L+  L  R + +
Sbjct: 245 HRLVSQPGQTWLARASQDAQSWPDGVEQLTMPLHGGGI------DLVALMMTLGKRQINT 298

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
           + VE GA +A + + + +VD +I+Y +  ++G+
Sbjct: 299 VWVEAGAHLAGALLQAGVVDELIVYLAPTLLGD 331


>gi|170732274|ref|YP_001764221.1| riboflavin biosynthesis protein RibD [Burkholderia cenocepacia
           MC0-3]
 gi|169815516|gb|ACA90099.1| riboflavin biosynthesis protein RibD [Burkholderia cenocepacia
           MC0-3]
          Length = 373

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/330 (36%), Positives = 174/330 (52%), Gaps = 17/330 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +   +  T+ NP V C+IVKDG VIG G T   G  HAEVQAL++A
Sbjct: 3   SDTDFAHMQRALALAARGMYTTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G +  G+T YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L 
Sbjct: 63  RSRGYDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++  E       +++R    R  + +K A S D    +    S  ITG  +
Sbjct: 123 DAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238
           +   H  RA++ AIL GIGTV  D+P LT R  G+     P RI++D    L LD+++++
Sbjct: 183 RLDGHAWRARACAILTGIGTVREDNPLLTVR--GIDTPRQPQRILVDSRLDLPLDARLLE 240

Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291
               AP++I     D    + A   + +   I+         DL  +L  L  RGV  L 
Sbjct: 241 G---APLLIFCGRLDAAGELRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           VE G  +  S +  R VD +++Y +  ++G
Sbjct: 298 VEAGHKLNGSLLRERCVDELLVYLAPSLLG 327


>gi|107022039|ref|YP_620366.1| riboflavin biosynthesis protein RibD [Burkholderia cenocepacia AU
           1054]
 gi|116688983|ref|YP_834606.1| riboflavin biosynthesis protein RibD [Burkholderia cenocepacia
           HI2424]
 gi|105892228|gb|ABF75393.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Burkholderia
           cenocepacia AU 1054]
 gi|116647072|gb|ABK07713.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Burkholderia cenocepacia HI2424]
          Length = 373

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/330 (36%), Positives = 174/330 (52%), Gaps = 17/330 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +   +  T+ NP V C+IVKDG VIG G T   G  HAEVQAL++A
Sbjct: 3   SDTDFAHMQRALALAARGMYTTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G +  G+T YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L 
Sbjct: 63  RSRGYDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++  E       +++R    R  + +K A S D    +    S  ITG  +
Sbjct: 123 DAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238
           +   H  RA++ AIL GIGTV  D+P LT R  G+     P RI++D    L LD+++++
Sbjct: 183 RLDGHAWRARACAILTGIGTVREDNPLLTVR--GIDTPRQPQRILVDSRLDLPLDARLLE 240

Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291
               AP++I     D    + A   + +   I+         DL  +L  L  RGV  L 
Sbjct: 241 G---APLLIFCGRLDAAGELRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           VE G  +  S +  R VD +++Y +  ++G
Sbjct: 298 VEAGHKLNGSLLRERCVDELLVYLAPSLLG 327


>gi|170703035|ref|ZP_02893863.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria
           IOP40-10]
 gi|170132059|gb|EDT00559.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria
           IOP40-10]
          Length = 373

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 119/330 (36%), Positives = 175/330 (53%), Gaps = 17/330 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +   +  T+ NP V C+IVKDG VIG G T   G  HAEVQAL++A
Sbjct: 3   SDTDFAHMQRALTLAARGMYTTAPNPRVGCVIVKDGNVIGEGFTQPAGQDHAEVQALKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G +  G+T YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L 
Sbjct: 63  RARGHDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++ +E       +++R    R  + +K A S D    +    S  ITG  +
Sbjct: 123 DAGIDVRCGLLANEAGELNIGFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238
           +   H  RA++ AIL GIGTV  D+P LT R  G+     P R+++D    L LD+++++
Sbjct: 183 RLDGHAWRARACAILTGIGTVREDNPLLTVR--GIDTPRQPQRVLVDSRLDLPLDARLLE 240

Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291
               AP++I     D    V A   + +   I+         DL  +L  L  RGV  L 
Sbjct: 241 G---APLLIFCGRLDASGEVRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           VE G  +  S +  + VD +++Y +  ++G
Sbjct: 298 VEAGHKLNGSLLREQCVDELLVYLAPSLLG 327


>gi|299771887|ref|YP_003733913.1| pyrimidine deaminase [Acinetobacter sp. DR1]
 gi|298701975|gb|ADI92540.1| pyrimidine deaminase [Acinetobacter sp. DR1]
          Length = 361

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/331 (36%), Positives = 185/331 (55%), Gaps = 29/331 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++  +  T  NP+V C+IVKD  +IG G     G PHAEV AL +A E+
Sbjct: 7   DQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGEGFHPKAGQPHAEVFALRQAAEQ 66

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-- 124
           A+GATAYVTLEPC+HYGR+PPCA+ +++  +++VVV   DP+  V+G+G+Q L   GI  
Sbjct: 67  AQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILKNAGIEV 126

Query: 125 ---IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
              I + + E   + FL A  T       ++ LK+A S D    MA   S  ITG +++ 
Sbjct: 127 EVGICENLAEKLNQGFLKAMST----GMPYVRLKVASSLDGRTAMASGESKWITGAVARQ 182

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----HSPMRIILDPHFKLSLDSKII 237
            V   RA S A++ GI TV+ADD +L  R  G  +      P R++LD   +L L++KI+
Sbjct: 183 DVQHWRAISGAVITGIETVIADDCQLNVRSLGHIDIETVAQPKRVVLDRQGRLPLNAKIL 242

Query: 238 KTALLAPVIIVTENDDPVLALA-FRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVE 293
                       EN + VL +  +R++  ++ +I  + + LK LL  L  +  +  +LVE
Sbjct: 243 ------------ENPETVLVMGPYRQELADLGVIQLEIQPLKILLQTLSKQHQIYDVLVE 290

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            GA ++ +F+   LVD +I Y +   +G+  
Sbjct: 291 AGATLSTAFLQEGLVDELISYIAPTFLGKSA 321


>gi|27904888|ref|NP_778014.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
 gi|46396884|sp|Q89AB0|RIBD_BUCBP RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
           RecName:
           Full=Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase; Includes: RecName:
           Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|27904286|gb|AAO27119.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
          Length = 372

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/345 (32%), Positives = 185/345 (53%), Gaps = 24/345 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A++ ++     TS NP+V C+IV + I++G G     G  HAE+ AL+ +GE+
Sbjct: 3   DIFYMKKAIKLAKKGSLTTSPNPNVGCIIVNNNIIVGSGWHKKTGMKHAEIYALKTSGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAY+TLEPCSH+G++PPC   + + GI RVV+   DP+ +VSG G++WL + GI+V
Sbjct: 63  AKGATAYITLEPCSHFGKTPPCCVALTKYGISRVVIATLDPNPKVSGNGVKWLKKHGILV 122

Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
                S+  I ++  +  R       I LK+A S D    +    S  IT   +++ V  
Sbjct: 123 TIGTLSKESIKINKGFFQRMTTGIPWIKLKLASSIDGRTALNNGKSKWITSDKARHDVQH 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCR-------LNGLQEHS------PMRIILDPHFKLSL 232
           +R +SDAI+    T+L D+P LT R          L +HS      P+R+I+D   +++ 
Sbjct: 183 VREKSDAIISSSETILFDNPLLTVRNTNNNDNNQKLLKHSKTFLKQPIRVIIDSKNRITP 242

Query: 233 DSKIIKT-ALLAPVIIVTEND---DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
             K IK   LL  + I ++N+     +  +    K+  I      DL  L+ +L    + 
Sbjct: 243 SHKCIKQPGLLFLIRIHSDNNIWPSHIKQIILNNKSKKI------DLIDLVKMLAKYQIN 296

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           ++L+E G +++ SF+   +++ +I+Y +  ++G    P    E Y
Sbjct: 297 NILIEAGPSLSSSFLKLNIINELIIYIAPKILGNYAKPLFFLENY 341


>gi|327332327|gb|EGE74063.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL097PA1]
          Length = 331

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/297 (37%), Positives = 159/297 (53%), Gaps = 28/297 (9%)

Query: 28  NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87
           NP V C+IV +  VIG+G     G PHAEV+AL +AG++ARGATA VTLEPC H GR+ P
Sbjct: 25  NPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDARGATAVVTLEPCHHTGRTGP 84

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT-RQV 146
           C+  +++ GI RVV+   DP+   SG G QWL   G+ V   + SE    L+A  T  Q+
Sbjct: 85  CSHALVDAGIARVVIAQSDPNPVASG-GEQWLRTHGVEVVTGVLSEEATALNADWTFSQI 143

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
            +R  +  K A S D         S  ITG  +++QV L RA+  AI+VG GT LAD+P 
Sbjct: 144 HRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNPR 203

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
           LT RL G+  H P+R+++                            +P      R  + +
Sbjct: 204 LTVRLPGV-THQPLRVVVG-------------------------MREPPAGCHLRDDSAS 237

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            ++    D  ++L +L  RGV  + +EGG  +A +F+ + LVD +I + +  V+G G
Sbjct: 238 TLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLVDEVIAHMAPTVLGGG 294


>gi|226355049|ref|YP_002784789.1| riboflavin biosynthesis protein [Deinococcus deserti VCD115]
 gi|226317039|gb|ACO45035.1| putative Riboflavin biosynthesis protein ribD [Deinococcus deserti
           VCD115]
          Length = 368

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/371 (33%), Positives = 190/371 (51%), Gaps = 36/371 (9%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  +   +G TS NP V C+IV+DG V+GRG     G PHAEV AL EAGE 
Sbjct: 8   DTEYMRLALNEAARGMGRTSPNPPVGCVIVRDGQVVGRGFHPRAGEPHAEVFALREAGEY 67

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSH+GR+PPCA  ++  G+ +VV+   DP+ RV G+G   L + GI +
Sbjct: 68  ARGATAYVTLEPCSHFGRTPPCADALVAAGVSQVVIAALDPNPRVGGQGASRLREAGIEV 127

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG---MAGCGSVP--ITGFISK 180
           +  + E E       + +  +  R  +  K A++ D  +     +G G     +TG  S+
Sbjct: 128 IVGVAEEEALRQQAGFRSLVMRARPWVIYKYAMTLDGKVAALDASGRGEANGLVTGLASR 187

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
            +V   R + D I VG GTV+ DDP LT R + G ++  P  ++ D   + S  +++I+ 
Sbjct: 188 ARVMAWRNEVDGIAVGSGTVITDDPLLTTRGVEGGRDPRP--VVFDGQGRTSASARVIRP 245

Query: 240 ALLAPVIIVTENDDPVLALA-FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
                 ++VT    P + ++        +IY       + L  L     ++L VEGG  +
Sbjct: 246 G----AVVVTA---PGMDMSRHEAAGAQVIYAT--QPSEALAELGRLNFSTLFVEGGPTL 296

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP-----SPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           A S +++ LVD +  + +  ++G G  P      P+ E  + +            DV  E
Sbjct: 297 AGSLLDAGLVDEVRAFVAPKLLGAGLNPLTAPVRPMHEAQVLR------------DVTFE 344

Query: 354 YIGKNLCLQEL 364
            +G +L ++ L
Sbjct: 345 SLGPDLLIRGL 355


>gi|254516856|ref|ZP_05128914.1| riboflavin biosynthesis protein RibD [gamma proteobacterium NOR5-3]
 gi|219674361|gb|EED30729.1| riboflavin biosynthesis protein RibD [gamma proteobacterium NOR5-3]
          Length = 365

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/325 (35%), Positives = 176/325 (54%), Gaps = 11/325 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ ALR +         NP V C++V+D  ++G G T   G  HAEV AL+ AG+ AR  
Sbjct: 1   MARALRLAERGKYWARPNPHVGCVLVRDSGIVGEGFTQPAGGDHAEVVALKSAGDAARDC 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
           TAYVTLEPC+H GR+PPC+Q +IE G+ RVVV + DP+ +V G GL+ L+  GI V   +
Sbjct: 61  TAYVTLEPCAHVGRTPPCSQALIEAGVARVVVGLKDPNPKVDGGGLRDLAAAGIEVSEGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M ++ ++ L  +L RQ   R  + +K+A+S D    MA   S  ITG  ++  V  LRA+
Sbjct: 121 MAAQVELQLAGFLARQRRGRPRLRIKLAMSLDGRTAMASGESQWITGADARRDVQKLRAE 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEH-------SPMRIILDPHFKLSLDSKIIKTALL 242
           S AIL GIGTVLADD  LT R     E          +R++ D   +   D+ +++ A  
Sbjct: 181 SCAILTGIGTVLADDCALTVRDAFFDEELLPPPQRRAIRVVADTRLRTPPDAAVLQGA-- 238

Query: 243 APVIIVTENDDPVLALAFRKKNINIIY-CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            P +++  ND            + +    +  D  ++L+ L  R    +L+E G  +A +
Sbjct: 239 QPSLLLHANDAVCPGSLTGAARLALPSPAEGLDPAQILSALADRECNEILLESGPTLAGA 298

Query: 302 FINSRLVDSIILYRSQIVIGEGGIP 326
            + S L D +I+Y + +++G    P
Sbjct: 299 MLQSGLADQLIVYMAPVLLGSRARP 323


>gi|111657939|ref|ZP_01408648.1| hypothetical protein SpneT_02000888 [Streptococcus pneumoniae
           TIGR4]
          Length = 360

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/316 (34%), Positives = 170/316 (53%), Gaps = 7/316 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A++ ++   G  + NP V  +IVKD  +IG+G   + G PHAE  AL+   E   GA
Sbjct: 1   MKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRESPVGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129
           T YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + V   +
Sbjct: 61  TLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQVTVGI 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E+E    + ++     +   ++ +K A+S D  I      S  IT   ++  VH LR  
Sbjct: 121 LENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQLRHH 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
             AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA      I T
Sbjct: 181 VSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKTYIAT 238

Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
            ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S +  
Sbjct: 239 SSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWSALEQ 298

Query: 306 RLVDSIILYRSQIVIG 321
           ++VD + +Y +  V G
Sbjct: 299 QIVDELKIYIAPKVFG 314


>gi|170288788|ref|YP_001739026.1| riboflavin biosynthesis protein RibD [Thermotoga sp. RQ2]
 gi|170176291|gb|ACB09343.1| riboflavin biosynthesis protein RibD [Thermotoga sp. RQ2]
          Length = 348

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/319 (36%), Positives = 176/319 (55%), Gaps = 19/319 (5%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
           FM  A+  ++  +G  + NP V  ++VKDG +I  G   Y G PHAE  A+E A   GE+
Sbjct: 5   FMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARKKGED 64

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            RGAT  VTLEPC H+G++PPC   IIE GI+ VV+   DP+  VSG G++     GI +
Sbjct: 65  LRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNP-VSGNGVEKFRNHGIEV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           ++ ++E E K     ++T   +KR  + LK A + D  I      S  IT  + + +VH 
Sbjct: 124 IEGVLEEEVKKLCEFFITYVTKKRPFVALKYASTLDGKIADHRGDSKWITDKL-RFKVHE 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT-ALLAP 244
           +R    A+LVG GTVL DDP+LTCRL   +  +P+R+ILD   K  L  K+ +     A 
Sbjct: 183 MRNIYSAVLVGAGTVLKDDPQLTCRLK--EGRNPVRVILDR--KGVLSGKVFRVFEENAR 238

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           VI+ TE+++     A    ++     DC  ++ +L  L  R + S+LVEGG+ V   F++
Sbjct: 239 VIVFTESEE-----AEYPPHVEKALSDC-SVESILRNLYERDIDSVLVEGGSKVFSEFLD 292

Query: 305 SRLVDSIILYRSQIVIGEG 323
               D +  + S  + G+G
Sbjct: 293 H--ADVVFGFYSTKIFGKG 309


>gi|159037490|ref|YP_001536743.1| riboflavin biosynthesis protein RibD [Salinispora arenicola
           CNS-205]
 gi|157916325|gb|ABV97752.1| riboflavin biosynthesis protein RibD [Salinispora arenicola
           CNS-205]
          Length = 353

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/328 (37%), Positives = 171/328 (52%), Gaps = 26/328 (7%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  A+  +   +G TS NP V C+++   G V+G G  AY G PHAE+ AL +AGE ARG
Sbjct: 10  MRRAVELAARGLGTTSPNPVVGCVLLDPGGRVVGEGFHAYAGGPHAEIVALAQAGERARG 69

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-- 127
            TA VTLEPC H GR+ PC+  +++ GI RVV+ V DP+   SG G   L   GI VD  
Sbjct: 70  GTAVVTLEPCDHTGRTGPCSTALVQAGIARVVIAVPDPNRAASG-GAATLRAAGIRVDLG 128

Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
            R  E+E      A+LT       ++  K A + D     A   S+ IT  +++  VH L
Sbjct: 129 VRAAEAEAGNV--AWLTSTRRGWPYVIWKYAATLDGRSAAADGTSMWITSEVARMDVHAL 186

Query: 187 RAQSDAILVGIGTVLADDPELTCRL---NGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           R   DA+L G+GTVLADDP LT R      L    P+R+++D   +    +++   A  A
Sbjct: 187 RGTVDAVLAGVGTVLADDPRLTVRNLRDGSLAIRQPLRVVVDSTGRTPPGARVRDDA--A 244

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P  I T             + + +      +L  LL  L  RGV + LVEGG  +A +F+
Sbjct: 245 PTWIAT------------AEEVGVDPEGRVELAGLLAALHQRGVRAALVEGGPRLAGAFL 292

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEE 331
            + LVD I+ Y +  ++G G  P+ L E
Sbjct: 293 AAGLVDKIVGYVAPRLLGAG--PAALTE 318


>gi|171315490|ref|ZP_02904726.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria MEX-5]
 gi|171099327|gb|EDT44065.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria MEX-5]
          Length = 373

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/330 (36%), Positives = 174/330 (52%), Gaps = 17/330 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +   +  T+ NP V C+IVKDG VIG G T   G  HAEVQAL+ A
Sbjct: 3   SDTDFAHMQRALTLAARGMYTTAPNPRVGCVIVKDGNVIGEGFTQPAGQDHAEVQALKNA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G +  G+T YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L 
Sbjct: 63  RTRGHDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++ +E       +++R    R  + +K A S D    +    S  ITG  +
Sbjct: 123 DAGIDVRCGLLANEAGELNIGFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238
           +   H  RA++ AIL GIGTV  D+P LT R  G+     P R+++D    L LD+++++
Sbjct: 183 RLDGHAWRARACAILTGIGTVREDNPLLTVR--GIDTPRQPQRVLVDSRLDLPLDARLLE 240

Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291
               AP++I     D    V A   + +   I+         DL  +L  L  RGV  L 
Sbjct: 241 G---APLLIFCGRLDAAGEVRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           VE G  +  S +  + VD +++Y +  ++G
Sbjct: 298 VEAGHKLNGSLLREQCVDELLVYLAPSLLG 327


>gi|253732422|ref|ZP_04866587.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253723812|gb|EES92541.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 357

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/317 (34%), Positives = 162/317 (51%), Gaps = 9/317 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           ++FM  A++ +    G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A
Sbjct: 12  SQFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNA 71

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            GAT Y+TLEPCSH+G +PPC   II+C I +VV    D  +   G   + L  +GI V+
Sbjct: 72  EGATIYITLEPCSHFGSTPPCVNKIIDCKITKVVYATKDNSLDTHGD--ETLRAQGIEVE 129

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + +         +   + ++   IT+K++ S D         S  IT    K  V+ LR
Sbjct: 130 CVDDERALQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLR 189

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DA+L G  TV  DDP+ T R+   +  +P+++IL     +  + +I +     P+ I
Sbjct: 190 HRHDAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWI 246

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            TEN +    L   + NI IIY    DL  +L  L  RGV +LLVE G      F+ S  
Sbjct: 247 YTENPN----LTTNQTNIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNY 302

Query: 308 VDSIILYRSQIVIGEGG 324
           +D  ILY +  +IG  G
Sbjct: 303 IDEFILYYAPKLIGGSG 319


>gi|223939370|ref|ZP_03631249.1| riboflavin biosynthesis protein RibD [bacterium Ellin514]
 gi|223891974|gb|EEF58456.1| riboflavin biosynthesis protein RibD [bacterium Ellin514]
          Length = 365

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/322 (36%), Positives = 166/322 (51%), Gaps = 11/322 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
           M  AL  +R   G TS NP V  ++VK G VIGRG     G PHAEV+AL++A   G + 
Sbjct: 1   MQNALALARRAYGNTSPNPLVGAVLVKHGKVIGRGWHHRAGQPHAEVEALKDAASKGNDP 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           +GAT YVTLEPC  +GR+PPC + I    I++VVV   DP+   +GR    L + GI +V
Sbjct: 61  KGATLYVTLEPCCTHGRTPPCTEAIKAAKIKKVVVAATDPNPAHAGRAFPLLERAGIKVV 120

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++  E      ++    V     + +K A++ D  I  AG  S  ITG  ++     L
Sbjct: 121 SGILAEEAGELNESFNHWIVHGTPLVIVKAAMTLDGKIATAGGESKWITGEKARAYGMKL 180

Query: 187 RAQSDAILVGIGTVLADDPELTCRL---NGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           R  +DAILVG+ TVLADDP LT R+   N  +E    RIILD   +  L +K++      
Sbjct: 181 RQGADAILVGVNTVLADDPSLTVRVQSRNKSEEKKFRRIILDSQARTPLKAKVVSDEFRE 240

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299
              IV     P   +    +  N++    +    DL+ L+  L G  V SLLVEGG  V 
Sbjct: 241 FTTIVVLKSAPERRVTALARQANVLVAPEKQGKIDLRWLVKKLGGENVMSLLVEGGGEVN 300

Query: 300 HSFINSRLVDSIILYRSQIVIG 321
            SF+  RL   +  + +  ++G
Sbjct: 301 ASFLLGRLAHRVAFFYAPKILG 322


>gi|325680426|ref|ZP_08159976.1| riboflavin biosynthesis protein RibD [Ruminococcus albus 8]
 gi|324107864|gb|EGC02130.1| riboflavin biosynthesis protein RibD [Ruminococcus albus 8]
          Length = 369

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/320 (34%), Positives = 166/320 (51%), Gaps = 10/320 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67
           FM AAL  +   +G  + NP V  +IV+DG +I  G     G  HAE  A  +  ++   
Sbjct: 6   FMQAALDSAENGMGFVNPNPMVGAVIVRDGKIIASGFHERYGSLHAERSAFAQCNKKGIN 65

Query: 68  -RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GA  YVTLEPC H+G+ PPC + I   GIR V +   DP+  VSG+G  +L  +GI +
Sbjct: 66  CAGADMYVTLEPCCHHGKQPPCTEAIAAHGIRHVYIGSSDPNPLVSGKGAAFLRSRGIGV 125

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
            + +++ +       +          +TLK A++ D         S  ITG  ++  VH 
Sbjct: 126 TEGVLKEKCDKLNEIFFKFITTGLPFVTLKYAMTLDGKTACYTGESKWITGETARRHVHR 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R +  AI+ GIGTVLADDP LTCR+   ++  P+R+I D H ++ LDS I++TA   P 
Sbjct: 186 ERLRHAAIMAGIGTVLADDPLLTCRIENGRD--PLRMICDTHLRIPLDSNIVRTAEKVPT 243

Query: 246 IIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           +IV   +D   A A +     I+         DL  L+ +L  + + S+L+EGG  +A S
Sbjct: 244 MIVCGEEDAQKADALKNAGCQIVCLPNGNGGTDLSALMKMLGEKKIDSVLIEGGGTLAWS 303

Query: 302 FINSRLVDSIILYRSQIVIG 321
            +   +VD ++ Y +  + G
Sbjct: 304 ALECSIVDKVMAYTAPKIFG 323


>gi|282855094|ref|ZP_06264426.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes J139]
 gi|282581682|gb|EFB87067.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes J139]
          Length = 331

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/297 (36%), Positives = 159/297 (53%), Gaps = 28/297 (9%)

Query: 28  NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87
           NP V C+IV +  VIG+G     G PHAEV+AL +AG++ARGATA VTLEPC H GR+ P
Sbjct: 25  NPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDARGATAVVTLEPCHHTGRTGP 84

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT-RQV 146
           C+  +++ GI RVV+   DP+   SG G QWL   G+ V   + SE    L+A  T  Q+
Sbjct: 85  CSHALVDAGIARVVIAQSDPNPVASG-GEQWLRTHGVEVVTGVLSEEATALNADWTFSQI 143

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
            +R  +  K A S D         S  ITG  +++QV L RA+  AI+VG GT LAD+P 
Sbjct: 144 HRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNPR 203

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
           LT RL G+  H P+R+++                            +P      R  + +
Sbjct: 204 LTVRLPGV-THQPLRVVVG-------------------------MREPPAGCHLRDDSAS 237

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            ++    D  ++L +L  RGV  + +EGG  +A +F+ + L+D +I + +  V+G G
Sbjct: 238 TLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLIDEVIAHMAPTVLGGG 294


>gi|145588458|ref|YP_001155055.1| riboflavin biosynthesis protein RibD [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046864|gb|ABP33491.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 371

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/333 (36%), Positives = 180/333 (54%), Gaps = 14/333 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D ++M  AL  ++  + L + NP V C+IVKDG VIGRG T   G  HAE+QA+ +A
Sbjct: 3   SAVDHQWMGEALGEAQKALYLANPNPRVGCVIVKDGQVIGRGHTQRVGGAHAEIQAIADA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G++  G+T YVTLEPCSH GR+PPC   ++     +V+V + DP+  VSG GL  L+
Sbjct: 63  KANGKDIAGSTIYVTLEPCSHTGRTPPCVNALVVARPAKVIVSMLDPNPLVSGGGLARLT 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++ESE +     +++R       + +KIA S D    +    S  ITG ++
Sbjct: 123 DAGIEVQCGLLESEAQAINRGFISRMTRGLPWVRMKIAASLDGKTALPNGQSQWITGPLA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H  RAQ+ AI+ G+GTV  DDP L  R        P RII+D   +   +++I+  
Sbjct: 183 RADGHHWRAQACAIVTGVGTVKEDDPSLNVREVSTHRQ-PWRIIVDSKLETPPNAQILND 241

Query: 240 ALLAPVIIVTENDDPVLALA----FRKKNINII-YCDCR---DLKKLLTILVG-RGVTSL 290
              + VIIV    D V  +A    F+K+ I +I + + +   DL KL T L   R +  +
Sbjct: 242 LQDSGVIIVCAALDDVDKVAKAKQFQKRGIEVIAFANPQGKVDLPKLFTYLAQEREMNEI 301

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            +E G  +  S +    VD ++LY +   +GEG
Sbjct: 302 HIESGFKLNGSMLREGCVDELLLYYAPFFMGEG 334


>gi|314982172|gb|EFT26265.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL110PA3]
 gi|315090403|gb|EFT62379.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL110PA4]
          Length = 331

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/297 (36%), Positives = 159/297 (53%), Gaps = 28/297 (9%)

Query: 28  NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87
           NP V C+IV +  VIG+G     G PHAEV+AL +AG++ARGATA VTLEPC H GR+ P
Sbjct: 25  NPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDARGATAVVTLEPCHHTGRTGP 84

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT-RQV 146
           C+  +++ GI RVV+   DP+   SG G QWL   G+ V   + SE    L+A  T  Q+
Sbjct: 85  CSHALVDAGIARVVIAQSDPNPVASG-GEQWLRTHGVEVVTGVLSEEATALNADWTFSQI 143

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
            +R  +  K A S D         S  ITG  +++QV L RA+  AI+VG GT LAD+P 
Sbjct: 144 HRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNPR 203

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
           LT RL G+  H P+R+++                            +P      R  + +
Sbjct: 204 LTVRLPGV-THQPLRVVVG-------------------------MREPPAGCHLRDDSAS 237

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            ++    D  ++L +L  RGV  + +EGG  +A +F+ + L+D +I + +  V+G G
Sbjct: 238 TLHIPSHDPAEVLDLLCCRGVHRVWLEGGPQLAGAFLAANLIDEVIAHMAPTVLGGG 294


>gi|225860210|ref|YP_002741719.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298230114|ref|ZP_06963795.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255023|ref|ZP_06978609.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298501980|ref|YP_003723920.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|225726901|gb|ACO22752.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298237575|gb|ADI68706.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|327390586|gb|EGE88926.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           GA04375]
          Length = 366

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 108/320 (33%), Positives = 173/320 (54%), Gaps = 7/320 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G  HAE  AL+   E 
Sbjct: 3   DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGSHAERNALKNCRES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + V
Sbjct: 63  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A++ D  I      S  IT   ++  VH 
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMTIDGKIATKTNQSKWITEEEARKHVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIG 321
            +  ++VD + +Y +  + G
Sbjct: 301 ALEQQIVDELKIYIAPKIFG 320


>gi|90410896|ref|ZP_01218910.1| Putative pyrimidine deaminase/pyrimidine reductase [Photobacterium
           profundum 3TCK]
 gi|90328109|gb|EAS44420.1| Putative pyrimidine deaminase/pyrimidine reductase [Photobacterium
           profundum 3TCK]
          Length = 371

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/334 (33%), Positives = 176/334 (52%), Gaps = 20/334 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           SS D   M  A+  ++     T+ NP+V C+I +   ++G G     G PHAEV AL  A
Sbjct: 3   SSIDHSMMLRAIELAKRGRFTTAPNPNVGCVIAQGSTIVGEGFHYQAGQPHAEVFALRAA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE+ +GATAYVTLEPCSH+GR+PPCAQ +I   + RVV  + DP+ +V GRG++ L   G
Sbjct: 63  GEQTKGATAYVTLEPCSHFGRTPPCAQALINANVSRVVCAMVDPNPKVGGRGIEMLQIAG 122

Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++ ++ +     ++ R      ++ LK+A S D    ++   S  ITG  ++  
Sbjct: 123 IEVQTGLLAADAQALNPGFIKRMKTGLPYVQLKLAASLDGRTALSNGDSKWITGPEARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLS 231
           V   RA++ AIL    TV+ADDP L  R + L E             P R+I+D   +++
Sbjct: 183 VQRFRARAGAILSTSSTVIADDPSLNVRWSELGEPVHAEYPEVALRQPTRVIIDSKNRVT 242

Query: 232 LDSKIIKTA---LLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
            D K+   A   LLA   +  E   D V  +   K++ +    +  +L  L+  L  + +
Sbjct: 243 PDFKLFSLAGKTLLARAEMGQETWSDSVSQVIIPKEDDS----EQLNLTSLMLELAKQDI 298

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
             + VE GA +A   + S LVD +I+Y++  ++G
Sbjct: 299 NHIWVEAGAELAGGLLASGLVDELIIYQAPKLMG 332


>gi|217969969|ref|YP_002355203.1| riboflavin biosynthesis protein RibD [Thauera sp. MZ1T]
 gi|217507296|gb|ACK54307.1| riboflavin biosynthesis protein RibD [Thauera sp. MZ1T]
          Length = 365

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/303 (37%), Positives = 170/303 (56%), Gaps = 9/303 (2%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGR 84
           TS NP V C+IV+DG  +G G  A  G  HAEV AL +AG  ARGATAYVTLEPCSH+GR
Sbjct: 25  TSPNPRVGCVIVRDGTTVGEGWHARAGEAHAEVHALRQAGAAARGATAYVTLEPCSHFGR 84

Query: 85  SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH-AYLT 143
           +PPCA  +IE G+ RV+  ++DP+  V+GRGL  L   GI     + +E    L+  +++
Sbjct: 85  TPPCADALIEAGVARVIAAMEDPNPLVAGRGLARLRASGIAAAHGLLAEAAQELNIGFVS 144

Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203
           R    R  + LK+A + D    +    S  ITG  ++   H  RA++ AIL GIGTV  D
Sbjct: 145 RMTRGRPWVRLKVAGTLDGKSALDNGVSQWITGPAARRDGHRWRARACAILTGIGTVRED 204

Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
           DP+L  R +   E  P+RI++D   ++S  ++I++     P++I T + D       R  
Sbjct: 205 DPQLGVR-DVPCERQPLRILVDARLEVSPQARILQG---EPILIATGSTDQARIDMLRAA 260

Query: 264 NINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
              I++        DL  LL +L  RG+  L VE G  +  S +    VD +++Y + ++
Sbjct: 261 GHEIVFVPNAAGKVDLGALLRLLGERGINELHVEAGFKLNGSLLREGCVDELLIYLAPML 320

Query: 320 IGE 322
           +G+
Sbjct: 321 VGD 323


>gi|315125800|ref|YP_004067803.1| riboflavin biosynthesis protein [Pseudoalteromonas sp. SM9913]
 gi|315014314|gb|ADT67652.1| riboflavin biosynthesis protein [Pseudoalteromonas sp. SM9913]
          Length = 375

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/331 (33%), Positives = 174/331 (52%), Gaps = 15/331 (4%)

Query: 4   SSF---DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           SSF   D R+M+ A+  ++     T+ NP+V C++VK+  +IG G     G  HAEV AL
Sbjct: 5   SSFSEDDKRYMARAIELAKKGRFTTTPNPNVGCVLVKNNKIIGEGFHRLAGQGHAEVNAL 64

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE A+GATAYVTLEPCSHYGR+PPCA+ +   G+++V+  + D + +V+G+GL+ L+
Sbjct: 65  TMAGENAKGATAYVTLEPCSHYGRTPPCAEGLKAAGVKKVIAAMVDSNPQVAGKGLKILA 124

Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++E++ +     +  R  +    +T K+A S D    +    S  ITG  +
Sbjct: 125 DAGIEVAYGLLEAQARALNFGFFKRMEQGLPFVTCKMAASIDGKTALKNGQSKWITGPAA 184

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--------HSPMRIILDPHFKLS 231
           +  V L RAQS AIL G  TVL DD +L  R   L            P+R+++D   +L+
Sbjct: 185 RQDVQLYRAQSCAILTGADTVLMDDAKLNVRPEELPYSLPTDLPLRQPVRVVIDSQNRLT 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSL 290
            D  +   ++ + VII T   D         K I +   + + DL  +L  L      ++
Sbjct: 245 PDLALF--SIQSEVIIFTTKVDKSHQWPHFVKQIEVPENNNKVDLLAVLHTLAQLQFNNV 302

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            +E GA +A       L+D  + Y +  ++G
Sbjct: 303 WLEAGATLAGKMTELDLIDEFVFYIAPKLMG 333


>gi|153834818|ref|ZP_01987485.1| riboflavin biosynthesis protein RibD [Vibrio harveyi HY01]
 gi|148868746|gb|EDL67820.1| riboflavin biosynthesis protein RibD [Vibrio harveyi HY01]
          Length = 374

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 121/334 (36%), Positives = 172/334 (51%), Gaps = 24/334 (7%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           +S D   MS AL  ++  +  T+ NP+V C+IV+DG ++G G     G PHAEV A+  A
Sbjct: 11  TSQDFEMMSRALMLAKRGIYTTAPNPNVGCVIVRDGEIVGEGHHHRAGEPHAEVHAMRMA 70

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G++ +GATAYVTLEPCSHYGR+PPCA+ +IE  + RVV  ++DP+ +V+GRG Q L   G
Sbjct: 71  GDKTQGATAYVTLEPCSHYGRTPPCAEGLIEAKVARVVCAMEDPNPKVAGRGFQMLRDAG 130

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + V   ++ESE       ++        +I LK+A S D    ++   S  IT   ++  
Sbjct: 131 VEVQVGLLESEAIELNKGFIKFMQTGMPYIQLKMAASLDGQSALSNGQSQWITSPKARQD 190

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL---------QE--HSPMRIILDPHFKLS 231
           V   RA S  IL    TV+ D+  L  R   L         QE    P R+I D   +LS
Sbjct: 191 VQRYRALSGGILSTSKTVIDDNASLNVRWEDLPKSVQTQYPQEDVRQPPRVIFDRQSQLS 250

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSL 290
            D K+  T      IIV++  D    L    +N  I      DL   L  +     +  L
Sbjct: 251 DDLKLFNTD--GERIIVSQGGDMAPEL---DENGQI------DLAATLRNVASEYHINHL 299

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            VE GA +A S I + LVD +I+Y +  ++G  G
Sbjct: 300 WVEAGATLASSLIKANLVDELIVYLAPKLMGSDG 333


>gi|254431289|ref|ZP_05044992.1| riboflavin biosynthesis protein RibD [Cyanobium sp. PCC 7001]
 gi|197625742|gb|EDY38301.1| riboflavin biosynthesis protein RibD [Cyanobium sp. PCC 7001]
          Length = 371

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/355 (32%), Positives = 183/355 (51%), Gaps = 10/355 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  AL+ +    G TS NP V C+++  +G ++G G  +  G  HAEV AL +AGE ARG
Sbjct: 1   MQRALQLANLGCGRTSPNPMVGCVVLDAEGRLVGEGYHSQAGEAHAEVGALRQAGERARG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
            TA VTLEPC H+GR+PPC+  ++  GIRRVVV + DPD +V+G G+  L   G+ +++ 
Sbjct: 61  GTAVVTLEPCCHHGRTPPCSDALLAAGIRRVVVAMADPDPQVAGGGIAQLRSAGVEVIEG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +   E +    A+L R   +R    LK A+  D    +    S  I+G  ++N VH LRA
Sbjct: 121 VAAEEARALNRAFLHRIAHRRPFGILKWAMGVDGRTALPNGASQWISGPEARNWVHALRA 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA++VG GTV ADDP LT R  G +   P+R++L     L   +++  TA  AP ++ 
Sbjct: 181 RCDAVVVGGGTVRADDPLLTSR--GRRHSEPLRVVLSRSLALPERARLWDTA-QAPTLVA 237

Query: 249 TENDDPV-LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
              + P        ++ I  +  +  +   L+  L  RG   +L E GA +A + +    
Sbjct: 238 HGYEAPARRRFQLDQRGIERLVLEACEPWALMQELARRGCNQVLWECGAELATAALRQSC 297

Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362
           V  +    +  V+G     +P+     +  F  +++       C + +G +L  Q
Sbjct: 298 VQEVAAVIAPKVMGGTLARTPVG----DLGFTGMQQVPAWQTTCPQQLGDDLLWQ 348


>gi|260556402|ref|ZP_05828621.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii ATCC
           19606]
 gi|260410457|gb|EEX03756.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii ATCC
           19606]
          Length = 361

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 117/331 (35%), Positives = 183/331 (55%), Gaps = 29/331 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++  +  T  NP+V C+IVKD  +IG G     G PHAEV AL +AGE+
Sbjct: 7   DQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGEGFHPKAGQPHAEVFALRQAGEQ 66

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPC+HYGR+PPCA+ +++  +++VVV   DP+  V+G+G+Q L   GI V
Sbjct: 67  AQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILKNAGIEV 126

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  + E         +L        ++ LK+A S D    MA   S  ITG  ++  V  
Sbjct: 127 EIGICEDLAAKLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAARQDVQH 186

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS--------PMRIILDPHFKLSLDSKII 237
            RA S A++ GI TV+ADD    C+LN    H+        P R+ILD   +L L +KI+
Sbjct: 187 WRAISGAVITGIDTVIADD----CQLNVRSLHNIDIETVAQPKRVILDRRGRLPLTAKIL 242

Query: 238 KTALLAPVIIVTENDDPVLALA-FRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVE 293
                       EN + V+ +  +R++  ++ +I  + + LK LL  L  +  +  +L+E
Sbjct: 243 ------------ENPETVMVMGPYRQELADLGVIQLEIQPLKTLLQTLSKQYQIYDVLIE 290

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            GA ++ +F+   L+D +I Y +  ++G+  
Sbjct: 291 AGATLSSAFLQEGLIDEMISYVAPTLLGQSA 321


>gi|88704437|ref|ZP_01102151.1| Riboflavin biosynthesis protein ribD [Congregibacter litoralis
           KT71]
 gi|88701488|gb|EAQ98593.1| Riboflavin biosynthesis protein ribD [Congregibacter litoralis
           KT71]
          Length = 377

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/379 (31%), Positives = 191/379 (50%), Gaps = 25/379 (6%)

Query: 1   MPVSSFDA---RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEV 57
           MP  + DA   +FM+ ALR +         NP V C++V+D  V+G G T   G  HAE+
Sbjct: 5   MPSDTPDAGDRQFMARALRLAERGKYWARPNPHVGCVLVRDSTVVGEGFTQPAGGDHAEI 64

Query: 58  QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            AL+ AG+ ARG+TAYVTLEPC+H GR+PPC   +I  G+ RV V + DP+ +V G G+ 
Sbjct: 65  MALKAAGDAARGSTAYVTLEPCAHTGRTPPCCNALIAAGVARVFVGLRDPNPKVDGGGIH 124

Query: 118 WLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
            L  +G+ V + +M  + +  L  +L RQ   R  + +K+A+S D    MA   S  ITG
Sbjct: 125 RLQAEGLAVHQGLMADQVEAQLAGFLQRQRLGRPRLRIKLAMSLDGRTAMASGESQWITG 184

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-------EHSPMRIILDPHFK 229
             ++  V  LRA+S AIL G+GTVL DD  LT R +          +   +R++ D H +
Sbjct: 185 PQARLDVQKLRAESCAILTGVGTVLEDDCALTVRDSAFDDELLPAPQRRALRVVADRHLR 244

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLA-----LAFRKKNINIIYCDCRDLKKLLTILVG 284
               + +++    + ++  +  D   L      LA   +   +   +      ++  L  
Sbjct: 245 TPAHAAVLQGEQPSLILHGSGADASHLPETLEHLALPGEAGGVAPAE------IMAALAA 298

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCV 341
           R    +L+E G  +A + + S + D++I+Y + +++G    P    PL+E         V
Sbjct: 299 RECNEILLESGPTLAGAMLRSGMADALIVYIAPVLLGSRARPLLELPLDEMAEALRLQLV 358

Query: 342 RRDYFGSDVCLEYIGKNLC 360
            R   G D    ++ +++ 
Sbjct: 359 DRRQIGDDHRFVFVPQSVA 377


>gi|84394363|ref|ZP_00993084.1| Pyrimidine reductase, riboflavin biosynthesis [Vibrio splendidus
           12B01]
 gi|84375022|gb|EAP91948.1| Pyrimidine reductase, riboflavin biosynthesis [Vibrio splendidus
           12B01]
          Length = 364

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/330 (33%), Positives = 178/330 (53%), Gaps = 27/330 (8%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
            MS A++ ++  +  T+ NP+V C+IV+ DG ++G G  A  G PHAEV A+  AG++A+
Sbjct: 1   MMSRAIQLAKRGIYTTAPNPNVGCVIVQTDGQIVGEGFHAKAGEPHAEVHAMRMAGDKAK 60

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127
           GATAYVTLEPCSHYGR+PPCA+ +I+  + +V+  + DP+ +V+GRG++ L   GI V+ 
Sbjct: 61  GATAYVTLEPCSHYGRTPPCAEGLIKAQVAKVICAMQDPNPKVAGRGIKMLRDAGIEVEI 120

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++E +      A++ R       + LK+A S D    +    S  IT   ++  V   R
Sbjct: 121 GLLEQDALDLNPAFIKRMQTGMPFVQLKMAASLDGQTALENGQSQWITSPEARRDVQNYR 180

Query: 188 AQSDAILVGIGTVLADDPELTCRL----NGLQEH-------SPMRIILDPHFKLSLDSKI 236
           A+S A+L    TV+ D+  L  R     + +++H        P+R+ILD   +L  + K+
Sbjct: 181 AKSGAVLSTSQTVIDDNASLNVRWAELPSSIKDHYAEDELRQPIRVILDRQNQLRPELKL 240

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEG 294
            +T               VL +A    +I +   +    DL  L+  L    +  + VE 
Sbjct: 241 FQTPT------------SVLRVAEASADIEVGTTEAGQLDLHDLMRQLPANHIDHIWVEA 288

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           GA +A S I ++LVD +ILY +  ++G  G
Sbjct: 289 GATLAKSLIEAQLVDELILYLAPKLMGSDG 318


>gi|226324277|ref|ZP_03799795.1| hypothetical protein COPCOM_02056 [Coprococcus comes ATCC 27758]
 gi|225206725|gb|EEG89079.1| hypothetical protein COPCOM_02056 [Coprococcus comes ATCC 27758]
          Length = 370

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 124/376 (32%), Positives = 187/376 (49%), Gaps = 42/376 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++   G T+ NP V  +IVKDG +IG G     G  HAE  A+    E 
Sbjct: 3   DEFYMRRAIELAKKGRGWTNPNPMVGAVIVKDGSIIGEGYHEKCGELHAERNAIASLTES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GAT YVTLEPC HYG++PPC + I+E  I RVV+   DP+ +VSG+G + L + G+ V
Sbjct: 63  AEGATLYVTLEPCCHYGKTPPCTEAILEQKIARVVIGSRDPNPKVSGKGAKILREAGVRV 122

Query: 127 DRMMESE-----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           +     E       +F H Y+T  +    ++ +K A++ D  I      S  I+G  +++
Sbjct: 123 EEDFLREECDALNPVFFH-YITTGL---PYVVMKYAMTADGKIATKTGASKWISGEEARS 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH +R    AI+ GIGTVLADDP L  RL G  + SP+RII D   ++ LDS+I +TA 
Sbjct: 179 LVHEMRHDYMAIMAGIGTVLADDPMLNVRLEG--KKSPVRIICDSMLRIPLDSQICQTAG 236

Query: 242 LAPVIIVTENDDP------------------VLALAFRKKNINIIYCDCRDLKKLLTILV 283
               I+    +                    +L++   K  IN        L+ L+  L 
Sbjct: 237 RYRTIVAYAGEKGNAICLEEKKHSLEKLGVVLLSVPSEKGEIN--------LQLLMRKLG 288

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NF 338
             G+ S+L+EGG  +    + S +V+ +  + +  + G  G  +P+E   +EK       
Sbjct: 289 ELGIDSVLIEGGGTLNEDALQSGIVNEVKAFIAPKIFGGRGGKTPVEGFGVEKVDDAIKL 348

Query: 339 MCVRRDYFGSDVCLEY 354
             +R    G D+  EY
Sbjct: 349 QLMRISQVGEDILAEY 364


>gi|33519699|ref|NP_878531.1| bifunctional pyrimidine deaminase/reductase in pathway of
           riboflavin synthesis [Candidatus Blochmannia floridanus]
 gi|33517362|emb|CAD83747.1| bifunctional pyrimidine deaminase/reductase in pathway of
           riboflavin synthesis [Candidatus Blochmannia floridanus]
          Length = 378

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/337 (35%), Positives = 172/337 (51%), Gaps = 19/337 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  ++S A R +R     T  NP+V C+IVK+  VIG G     G  HAE+ AL  AG+ 
Sbjct: 10  DLIYLSRAFRLARKGRFTTMPNPNVGCVIVKENKVIGEGYHIRAGEDHAEIHALRIAGDS 69

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGAT YVTLEPCSHYGR+PPC   +I  GI+ VV+ + DPD  + GRG++ L + GI+V
Sbjct: 70  ARGATVYVTLEPCSHYGRTPPCTTALINSGIKCVVISMLDPDPEIKGRGVRLLQESGILV 129

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     ++ R       I +K+A S D    M    S  IT   S+  V  
Sbjct: 130 RHSLMLSEAEHINKGFIKRIRTGMPWIKVKLAASLDGRTAMKTGESKWITSVQSRQDVQC 189

Query: 186 LRAQSDAILVGIGTVLADDPELTCR---------LNGLQEH--SPMRIILDPHFKLSLDS 234
            RA+SD IL    T+L D+P L  R         L   +EH   P+R+I+D   ++    
Sbjct: 190 FRAESDVILSTATTILIDNPHLNVRWSFFPKNIQLKYCREHIRQPLRVIIDSANRVLPTH 249

Query: 235 KIIKTALLAPVIIVTENDD----PVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGVTS 289
           + I+ +    VI+V    D    P          IN++     +L+ L+  L   R + +
Sbjct: 250 RFIQNS--GKVILVRLKKDNLNWPESVEQLLAPEINLVGSYQINLEALMKYLGYVRKINN 307

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           + VE G  ++ S ++  LVD +ILY+S   +G    P
Sbjct: 308 VWVEAGPTLSGSLLDIGLVDELILYQSIKFLGSNAKP 344


>gi|193076093|gb|ABO10696.2| hypothetical protein A1S_0221 [Acinetobacter baumannii ATCC 17978]
          Length = 361

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/331 (35%), Positives = 181/331 (54%), Gaps = 29/331 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++  +  T  NP+V C+IVKD  +IG G     G PHAEV AL EAGE 
Sbjct: 7   DQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDNQLIGEGFHPKAGQPHAEVFALREAGEH 66

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPC+HYGR+PPCA+ +++  +++VVV   DP+  V+G+G+Q L   GI V
Sbjct: 67  AQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILKNAGIEV 126

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  + E         +L        ++ LK+A S D    MA   S  ITG  ++  V  
Sbjct: 127 EIGICEDLAAQLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAARQDVQH 186

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS--------PMRIILDPHFKLSLDSKII 237
            RA S A++ GI TV+ DD    C+LN    H+        P R+ILD   +L L +KI+
Sbjct: 187 WRAISGAVITGIDTVIVDD----CQLNVRSLHNIDIETVAQPKRVILDRRGRLPLTAKIL 242

Query: 238 KTALLAPVIIVTENDDPVLALA-FRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVE 293
                       EN + V+ +  +R++  ++ +I  + + LK LL  L  +  +  +LVE
Sbjct: 243 ------------ENPETVMVMGPYRQELADLGVIQLEIQPLKTLLQTLSKQYQIYDVLVE 290

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            GA ++ +F+   LVD +I Y +  ++G+  
Sbjct: 291 AGATLSTAFLQEGLVDEMISYVAPTLLGQSA 321


>gi|327399584|ref|YP_004340453.1| riboflavin biosynthesis protein RibD [Hippea maritima DSM 10411]
 gi|327182213|gb|AEA34394.1| riboflavin biosynthesis protein RibD [Hippea maritima DSM 10411]
          Length = 375

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/329 (32%), Positives = 174/329 (52%), Gaps = 10/329 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           V + D  FM  A+  ++     T  NP V  +IVK+G +IG+G     G PHAEV+A+  
Sbjct: 12  VMNKDELFMKKAIELAKKAKNKTCPNPLVGAVIVKEGKIIGQGYHKKAGLPHAEVEAINS 71

Query: 63  AGE--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             +  + + AT YV LEPC+HYGR+PPC+  II  GI+RVV+ + D + + SG G++ L 
Sbjct: 72  VKDRNQLKDATIYVNLEPCNHYGRTPPCSLAIINSGIKRVVIGMRDINKKASG-GIERLK 130

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++E E K     ++   + ++    +K A+  +  I + G  S  IT   +
Sbjct: 131 GAGIDVKVGVLEDEAKKLNEVFIENTLNRKPFFIMKAAMLLNGCIAVKGGVSQWITSEKA 190

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H LR  + A+LVGI T++ DDP LTCR+ G ++  P R++LD + K+ + +KI   
Sbjct: 191 RRFSHRLRGTNSAVLVGINTIIMDDPLLTCRIKGYRQ--PKRVVLDMNLKIPISAKIFSE 248

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGG 295
                 II ++N D       R  ++NI+ CD  + +     L   L+   + S +VEGG
Sbjct: 249 YPNNIYIITSKNSDDAKKRILRAMDVNIVECDTENGEFNPADLSEKLLENEICSCIVEGG 308

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           +     F+ ++L +   L  +  + G  G
Sbjct: 309 SRTHGYFLKNKLYNKAYLLYAPKITGSYG 337


>gi|184156566|ref|YP_001844905.1| pyrimidine deaminase [Acinetobacter baumannii ACICU]
 gi|332874950|ref|ZP_08442801.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
           6014059]
 gi|183208160|gb|ACC55558.1| Pyrimidine deaminase [Acinetobacter baumannii ACICU]
 gi|322506453|gb|ADX01907.1| ribD [Acinetobacter baumannii 1656-2]
 gi|323516332|gb|ADX90713.1| pyrimidine deaminase [Acinetobacter baumannii TCDC-AB0715]
 gi|332736893|gb|EGJ67869.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
           6014059]
          Length = 361

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 117/331 (35%), Positives = 183/331 (55%), Gaps = 29/331 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++  +  T  NP+V C+IVKD  +IG G     G PHAEV AL +AGE+
Sbjct: 7   DQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGEGFHPKAGQPHAEVFALRQAGEQ 66

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPC+HYGR+PPCA+ +++  +++VVV   DP+  V+G+G+Q L   GI V
Sbjct: 67  AQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILKNAGIEV 126

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  + E         +L        ++ LK+A S D    MA   S  ITG  ++  V  
Sbjct: 127 EIGICEDLAAQLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAARQDVQH 186

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS--------PMRIILDPHFKLSLDSKII 237
            RA S A++ GI TV+ADD    C+LN    H+        P R+ILD   +L L +KI+
Sbjct: 187 WRAISGAVITGIETVIADD----CQLNVRSLHNVDIETVAQPKRVILDRRGRLPLTAKIL 242

Query: 238 KTALLAPVIIVTENDDPVLALA-FRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVE 293
                       EN + V+ +  +R++  ++ +I  + + LK LL  L  +  +  +L+E
Sbjct: 243 ------------ENPETVMVMGPYRQELADLGVIQLEIQPLKTLLQTLSKQYQIYDVLIE 290

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            GA ++ +F+   L+D +I Y +  ++G+  
Sbjct: 291 AGATLSSAFLQEGLIDEMISYVAPTLLGQSA 321


>gi|312883784|ref|ZP_07743503.1| riboflavin-specific deaminase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368533|gb|EFP96066.1| riboflavin-specific deaminase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 365

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 117/327 (35%), Positives = 165/327 (50%), Gaps = 22/327 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D   MS AL+ +      T+ NP V C+IVKDG+V+G G     G PHAEV AL+ A E 
Sbjct: 6   DHTHMSRALKLAELGKYTTAPNPRVGCVIVKDGLVVGEGFHYRAGEPHAEVHALQAAKER 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GAT YVTLEPCSHYGR+PPCA+ +I+  + RVV  + DP+  VSGRG+Q L   GI V
Sbjct: 66  AIGATVYVTLEPCSHYGRTPPCAEALIKAKVGRVVCAMQDPNTLVSGRGIQMLRSAGIEV 125

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  ++E +      A++         + LK+A S D    +    S  IT   ++  V  
Sbjct: 126 DVGLLEQDALDLNRAFIKTMRSGLPFVQLKLAGSLDGQTALKNGQSQWITSSQARQDVQA 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
            RAQS AIL    TV+ D+  LT R + L               P R+ILD    L+ D 
Sbjct: 186 FRAQSGAILSTSKTVIEDNASLTVRWSELPASIQAIYPEKALRQPPRVILDRKQTLTSDL 245

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           +  ++   +  II+  +++    L + K+           L    T+     +  L VE 
Sbjct: 246 RFFQSQ--SESIIIAPSNEHFDELDWSKQ--------LELLPIFKTLAKTYSINHLWVEA 295

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321
           GA ++ S I   LVD +ILY +  ++G
Sbjct: 296 GATLSRSLIREGLVDELILYIAPKLMG 322


>gi|254246078|ref|ZP_04939399.1| Pyrimidine reductase [Burkholderia cenocepacia PC184]
 gi|124870854|gb|EAY62570.1| Pyrimidine reductase [Burkholderia cenocepacia PC184]
          Length = 373

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/330 (36%), Positives = 174/330 (52%), Gaps = 17/330 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +   +  T+ NP V C+IVKDG VIG G T   G  HAEVQAL++A
Sbjct: 3   SDTDFAHMQRALALAARGMYTTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G +  G+T YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L 
Sbjct: 63  RSRGYDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++ +E       +++R    R  + +K A S D    +    S  ITG  +
Sbjct: 123 DAGIDVRCGLLANEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238
           +   H  RA++ AIL GIGTV  D+P LT R  G+     P RI++D    L LD+++++
Sbjct: 183 RLDGHAWRARACAILTGIGTVREDNPLLTVR--GIDTPRQPQRILVDSRLDLPLDARLLE 240

Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291
               AP++I     D    + A   + +   I+         DL  +L  L  RGV  L 
Sbjct: 241 G---APLLIFCGRLDAAGELRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           VE G  +  S +    VD +++Y +  ++G
Sbjct: 298 VEAGHKLNGSLLREHCVDELLVYLAPSLLG 327


>gi|170767910|ref|ZP_02902363.1| riboflavin biosynthesis protein RibD [Escherichia albertii TW07627]
 gi|170123398|gb|EDS92329.1| riboflavin biosynthesis protein RibD [Escherichia albertii TW07627]
          Length = 361

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 130/367 (35%), Positives = 190/367 (51%), Gaps = 28/367 (7%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  A E+A+GA
Sbjct: 1   MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGDGYHHRAGEPHAEVHALRMAEEKAKGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
           TAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V   +
Sbjct: 61  TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V  LRAQ
Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDSKIIK 238
           S AIL    TVLADDP LT R + L E +           P+RI++D   +++ + +I++
Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQTLYPQENLRQPVRIVIDSQNRVTPEHRIVQ 240

Query: 239 TALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
                      E+     + V  L   + N ++      DL  L+  L  + + S+ VE 
Sbjct: 241 QPGETWFARTQEDSRHWPETVRTLLIPEYNGHL------DLVMLMMQLGKQQINSIWVEA 294

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349
           G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      + G D
Sbjct: 295 GPTLAGALLLAGLVDELIVYIAPKLLGSEARGLCTLPG-LEKLADAPQFKFKEIRHVGPD 353

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 354 VCLHLVG 360


>gi|322834072|ref|YP_004214099.1| riboflavin biosynthesis protein RibD [Rahnella sp. Y9602]
 gi|321169273|gb|ADW74972.1| riboflavin biosynthesis protein RibD [Rahnella sp. Y9602]
          Length = 378

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/332 (35%), Positives = 175/332 (52%), Gaps = 18/332 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     T+ NP+V C+IV +G ++G G     G PHAEV AL  AGE+
Sbjct: 13  DEHYMARAFELARRGRFTTTPNPNVGCVIVLNGEIVGEGYHLRAGEPHAEVHALRMAGEK 72

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q G+ V
Sbjct: 73  AKGATAYVTLEPCSHHGRTPPCADALLAAGVARVVAAMQDPNPEVAGRGLYRLKQNGVDV 132

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M  + +     +L R      ++ LK+  S D    MA   S  IT   ++  V  
Sbjct: 133 SHGLMHPQAEAVNLGFLKRMRTGFPYVQLKMGASLDGRTAMASGESQWITSAAARADVQR 192

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLSLDS 234
            RA+S AIL    TVLAD+P L  R + L               P+R+ILD   +++   
Sbjct: 193 FRAESSAILSTSATVLADNPSLNVRWSELGSEVQAIYPEENLRQPLRVILDSQNRVTPQH 252

Query: 235 KIIKTALLAPVIIVT-ENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292
           +++   L   V +   E D  V   +  +    +   D R DL  L+  L  R + S+ V
Sbjct: 253 QVVN--LPGEVWLARLEADTQVWPGSVEQ--WRVAGRDNRIDLVLLMMQLAKRQINSIWV 308

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           E GA +A + + + LVD +I+Y +  ++G+ G
Sbjct: 309 EAGAQLAGALLQAGLVDELIVYMAPKLLGDNG 340


>gi|218264485|ref|ZP_03478318.1| hypothetical protein PRABACTJOHN_04018 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221978|gb|EEC94628.1| hypothetical protein PRABACTJOHN_04018 [Parabacteroides johnsonii
           DSM 18315]
          Length = 354

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 117/337 (34%), Positives = 181/337 (53%), Gaps = 20/337 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + ++M+  +  +R   G T+ NP V  +IV  G +IG G     G  HAEV A+    +E
Sbjct: 11  EEKYMARCIELARGGEGNTAPNPMVGAVIVHKGKIIGEGFHRKCGEAHAEVNAVASVRDE 70

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           A  R +T YV+LEPCSHYG++PPCA+ II+ GI RVVV   DP   VSGRG++ L + G+
Sbjct: 71  ALLRDSTIYVSLEPCSHYGKTPPCAELIIKKGIPRVVVGTLDPFPEVSGRGVRMLREAGV 130

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM----AGCGSVPITGFIS 179
            +V  ++E E +    A++T Q+ KR ++ LK A S D  + +    A    V ++   +
Sbjct: 131 EVVTGVLEEEARTLNPAFMTFQIRKRPYVYLKWAQSADGFMDVRREDATESPVLLSSAET 190

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
             +VH LR++  AI+VG  T L D+P LT R    Q  SP+R++LD   KL   S ++  
Sbjct: 191 LRRVHRLRSEVAAIMVGTRTALLDNPSLTVRHWAGQ--SPVRVVLDRTLKLPAGSHLLDG 248

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAA 297
            +   V    E +         + N+  +  D     L ++L  L  + + SL+VEGGA 
Sbjct: 249 MVRTLVFTAAEVES--------RPNVEYVRIDFEQEVLPQVLQYLYEQNLNSLMVEGGAG 300

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
           +  SF+++ L D   +  +  V+G  G+ +P   G L
Sbjct: 301 LLESFLDAGLWDEAWVETAPAVLG-AGVKAPAVPGVL 336


>gi|82701141|ref|YP_410707.1| riboflavin biosynthesis protein RibD [Nitrosospira multiformis ATCC
           25196]
 gi|82409206|gb|ABB73315.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Nitrosospira
           multiformis ATCC 25196]
          Length = 366

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 116/324 (35%), Positives = 175/324 (54%), Gaps = 9/324 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D RFM+ ALR +   +  TS NP V C++V+DG V+G G     G  HAE+ AL  A
Sbjct: 3   SPTDYRFMAQALRLAEKGLYSTSPNPRVGCVLVRDGQVVGTGWHERAGEAHAEINALAAA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G  ARGA AY+TLEPCSHYGR+PPCA  +++ G+ +V+  + DP+  V+GRG   L + G
Sbjct: 63  GPAARGALAYLTLEPCSHYGRTPPCADALVQAGVAKVITAMQDPNPLVAGRGCALLEEAG 122

Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   +ME+E K     +++R    R  + +KIA S D    +    S  IT   ++  
Sbjct: 123 IEVKTGLMEAEAKALNIGFVSRMTRGRPWVRVKIAASLDGKTALNNGSSQWITSAAARRD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H  RA+S A++ GIGTVLADDP+LT R +      PM +++D    + LD+ +++    
Sbjct: 183 GHRWRARSCAVMTGIGTVLADDPQLTVR-HIHTSRQPMPVVVDRGLDIPLDAGLLRG--- 238

Query: 243 APVIIVTENDDPVLALAFRKKNINIIY----CDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
           A  ++ T        +A R    ++I         DL  ++  L    +  +LVE G+ +
Sbjct: 239 AGELVFTAAASEGKIVALRDVGAHVILLPDSAGNVDLAAMMRRLADLEINEVLVEAGSGL 298

Query: 299 AHSFINSRLVDSIILYRSQIVIGE 322
               I + LVD  ++Y +  +IG 
Sbjct: 299 NGGLIQADLVDEFVIYLAPCLIGN 322


>gi|118496729|ref|YP_897779.1| pyrimidine reductase/pyrimidine deaminase [Francisella tularensis
           subsp. novicida U112]
 gi|194324036|ref|ZP_03057811.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp.
           novicida FTE]
 gi|208780000|ref|ZP_03247343.1| riboflavin biosynthesis protein RibD [Francisella novicida FTG]
 gi|118422635|gb|ABK89025.1| pyrimidine reductase/pyrimidine deaminase [Francisella novicida
           U112]
 gi|194321933|gb|EDX19416.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp.
           novicida FTE]
 gi|208744004|gb|EDZ90305.1| riboflavin biosynthesis protein RibD [Francisella novicida FTG]
          Length = 355

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 117/351 (33%), Positives = 175/351 (49%), Gaps = 18/351 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + D  +M  AL  +       S NP V C+IVK+G +I  G     G  HAEV AL +
Sbjct: 1   MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALIK 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
            G++A+GATAYVTLEPC H+GR+PPC   II+ GI++V++   DP+ +V+G+G++ L   
Sbjct: 61  VGDKAKGATAYVTLEPCCHHGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120

Query: 123 GIIV-----DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           GI V     ++  +   KIF H     Q  K+  +  K A+S D  I +    S  I+  
Sbjct: 121 GITVEVGLLEKQAQELNKIFFH----YQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSH 176

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            +    H LR   DAIL+G  T++ D+P L  R+N  +   P R IL  H      +  +
Sbjct: 177 QAFVNTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHPTRFILANHLTTINHNWRV 236

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR----GVTSLLVE 293
                A  I V       +A    +  I          +  L  L+ +    G+TSLLVE
Sbjct: 237 LDQRHAKTIFVCSKISAQVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGKIGITSLLVE 296

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           GG    +SFIN +LV+    Y + ++I +    +P ++  L  N + VR D
Sbjct: 297 GGNKTLNSFINQKLVNEFYTYLAPVIIADY---NPKQQ--LSFNQISVRED 342


>gi|254372095|ref|ZP_04987588.1| hypothetical protein FTCG_01236 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151569826|gb|EDN35480.1| hypothetical protein FTCG_01236 [Francisella novicida GA99-3549]
          Length = 355

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 118/351 (33%), Positives = 174/351 (49%), Gaps = 18/351 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + D  +M  AL  +       S NP V C+IVK+G +I  G     G  HAEV AL +
Sbjct: 1   MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALIK 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
            G++A+GATAYVTLEPC H+GR+PPC   II+ GI++V++   DP+ +V+G+G++ L   
Sbjct: 61  VGDKAKGATAYVTLEPCCHHGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120

Query: 123 GIIV-----DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           GI V     ++  +   KIF H     Q  K+  +  K A+S D  I +    S  I+  
Sbjct: 121 GITVEVGLLEKQAQELNKIFFH----YQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSH 176

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            +    H LR   DAIL+G  T++ D+P L  R+N  +   P R IL  H      +  +
Sbjct: 177 QAFVNTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHPTRFILANHMTTIDHNWRV 236

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVE 293
                A  I V       +A    +  I             L  LL  +   G+TSLLVE
Sbjct: 237 LDQRHAKTIFVCSKISAQVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGNIGITSLLVE 296

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           GG    +SFIN +LV+    Y + ++I +    +P ++  L  N + VR D
Sbjct: 297 GGNKTLNSFINQKLVNEFYTYLAPVIIADY---NPKQQ--LSFNQISVRED 342


>gi|258424182|ref|ZP_05687064.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9635]
 gi|257845803|gb|EEV69835.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9635]
          Length = 347

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 108/317 (34%), Positives = 161/317 (50%), Gaps = 9/317 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           ++FM  A++ +    G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A
Sbjct: 2   SQFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNA 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            GAT Y+TLEPCSH+G +PPC   II+C I +VV    D  +   G   + L   GI V+
Sbjct: 62  EGATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLNTHGD--ETLRDHGIEVE 119

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + +         +   + ++   IT+K++ S D         S  IT    K  V+ LR
Sbjct: 120 CVDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLR 179

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DA+L G  TV  DDP+ T R+   +  +P+++IL     +  + +I +     P+ I
Sbjct: 180 HRHDAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWI 236

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            TEN +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  
Sbjct: 237 YTENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNY 292

Query: 308 VDSIILYRSQIVIGEGG 324
           +D  ILY +  +IG  G
Sbjct: 293 IDEFILYYAPKLIGGSG 309


>gi|254375242|ref|ZP_04990722.1| hypothetical protein FTDG_01434 [Francisella novicida GA99-3548]
 gi|151572960|gb|EDN38614.1| hypothetical protein FTDG_01434 [Francisella novicida GA99-3548]
          Length = 355

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 118/351 (33%), Positives = 177/351 (50%), Gaps = 18/351 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + D  +M  AL  +       S NP V C+IVK+G +I  G     G  HAEV AL +
Sbjct: 1   MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALTK 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A ++A+GATAYVTLEPC H+GR+PPC   II+ GI++V++   DP+ +V+G+G++ L   
Sbjct: 61  AVDKAKGATAYVTLEPCCHHGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120

Query: 123 GIIV-----DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           GI V     ++  +   KIF H     Q  K+  +  K A+S D  I +    S  I+  
Sbjct: 121 GITVEVGLLEKQAQELNKIFFH----YQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSH 176

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            +    H LR   DAIL+G  T++ D+P L  R+N  +   P R IL  H      +  +
Sbjct: 177 QAFVNTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHPTRFILANHMTTIDHNWRV 236

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINI-IYCDCRD---LKKLLTILVGRGVTSLLVE 293
                A  I V       +A    +  I   ++   +    L  LL  +   G+TSLLVE
Sbjct: 237 LDQRHAKTIFVCSKISAQVATKLNQLGIEYWLFPQSQHQVCLDTLLEKMGNIGITSLLVE 296

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           GG    +SFIN +LV+    Y + ++I +    +P ++  L  N + VR D
Sbjct: 297 GGNKTLNSFINQKLVNEFYTYLAPVIIADY---NPKQQ--LSFNQISVRED 342


>gi|220929424|ref|YP_002506333.1| riboflavin biosynthesis protein RibD [Clostridium cellulolyticum
           H10]
 gi|219999752|gb|ACL76353.1| riboflavin biosynthesis protein RibD [Clostridium cellulolyticum
           H10]
          Length = 367

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 117/361 (32%), Positives = 195/361 (54%), Gaps = 23/361 (6%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M   L  ++   G T+ NP V  +I K+G +I  G     GC HAEV A   A  +  G
Sbjct: 7   YMKRTLEIAKEGWGRTNPNPLVGAVIAKNGKIISEGFHEALGCAHAEVCAFSNAPTDISG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           AT YV LEPCSHYGR+PPC + II+ GI+ VVV + DP+ +VSG+G+Q L    I ++  
Sbjct: 67  ATLYVNLEPCSHYGRTPPCVKAIIDSGIKEVVVAMVDPNPKVSGKGIQMLKDANINVIVG 126

Query: 129 MMESEGK----IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           ++E E K    IF+H Y+T+++     + +K A++ D  I      S  I+G  S+  VH
Sbjct: 127 VLEEEAKKLNEIFIH-YITKRL---PFVIMKTAMTLDGKIASVTGDSKWISGEYSREYVH 182

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            +R +  +I+VG+ TV+ D+P LT R    +   P+RI++D   ++ ++S++I++   A 
Sbjct: 183 AIRNRVSSIMVGVNTVINDNPSLTARPISGKGIDPVRIVVDSSGRIPIESRVIQSDSEAG 242

Query: 245 VIIVTE---NDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
           +I+ T    + D    L  R   + II    +    +L++L+  L    + S+L+EGG  
Sbjct: 243 LILATTEKIHKDKETQLLSR--GVRIIKTAPKNGKVNLRELMEELYKLEIDSVLLEGGGT 300

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
           +  S + + +V+ ++ + S  +IG     +P+    +EK         +R + F  DV +
Sbjct: 301 LNFSALEAGIVNKVMTFISPKIIGGSSAVTPVGGKGIEKMKDAIALSDIRVERFDRDVLI 360

Query: 353 E 353
           E
Sbjct: 361 E 361


>gi|85058629|ref|YP_454331.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Sodalis glossinidius str. 'morsitans']
 gi|84779149|dbj|BAE73926.1| riboflavin biosynthesis protein RibD [Sodalis glossinidius str.
           'morsitans']
          Length = 375

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 125/338 (36%), Positives = 174/338 (51%), Gaps = 22/338 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +++ A   +R     T+ NP+V C+IV+DG ++G G     G  HAEV AL +AG  
Sbjct: 4   DEVYLARAFELARRGRFTTAPNPNVGCVIVRDGRIVGEGYHQRAGYAHAEVHALRQAGNA 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           AR ATAYVTLEPCSH+GR+PPCA  +I+ G+ RVV  + DP+ +V+GRG   L Q GI V
Sbjct: 64  ARCATAYVTLEPCSHHGRTPPCADALIDAGVARVVAAMPDPNPQVAGRGFYRLQQAGIEV 123

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M  E +     +L R       + LK+A S D    MA   S  IT   ++  V  
Sbjct: 124 RHGLMLPEAEAVNPGFLKRMRTGFPWVRLKLAASLDGRTAMASGESQWITSTEARRDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILD------PHF 228
            RA+SDAIL    TVLADDP LT R   L E             P+R+I+D      P  
Sbjct: 184 WRAESDAILSTATTVLADDPALTVRWASLPEDVQALYPEERLRQPVRVIIDRANSVTPSH 243

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
            ++    +   A LAP  +   +    L L    +  N  +    DL  L+  L  R + 
Sbjct: 244 WVAQGVGLTWLARLAPDDLTWPSSVEQLLLPA-GEGANAAHL---DLVALMMQLGRRQIN 299

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           SL VE GA +A + + + LVD +ILY++  ++G    P
Sbjct: 300 SLWVEAGAGLAGALLGAGLVDELILYQAPKLLGADARP 337


>gi|262405149|ref|ZP_06081699.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 2_1_22]
 gi|262356024|gb|EEZ05114.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 2_1_22]
          Length = 351

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 124/353 (35%), Positives = 182/353 (51%), Gaps = 27/353 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + ++M   +  ++  +   S NP V  +IV DG +IG G     G  HAEV A+    +E
Sbjct: 9   EEKYMRRCIELAKNGLCNVSPNPMVGAVIVCDGRIIGEGYHIRCGEAHAEVNAIHSVKDE 68

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +  + +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP   V+GRG+Q L   G 
Sbjct: 69  SLLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGR 128

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181
            V   ++E E K  +  ++T     R  ITLK A S D+ I +      PI  +  ++  
Sbjct: 129 EVSVGVLEEECKSLIRRFITFNTLHRPFITLKWAESADHFIDIERTDGKPIVLSSPLTSM 188

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH  RA++DAI+VG  T L D+P LT R      H+P+R++LD    L  DS+I    +
Sbjct: 189 LVHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDSQIFDGNV 246

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVA 299
             P +I TE   P       KKNI  I  +     LK+++  L  R + SLLVEGG  + 
Sbjct: 247 --PTLIFTEKQQP------EKKNITYITINFSHNPLKQIMEALYQRKIQSLLVEGGRQLL 298

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP---------LEEGYLEKNFMCVRR 343
            SFI++ L D   + +    +   GI +P         +EE +  + +  VRR
Sbjct: 299 QSFIDNELWDEAYIEKCPSRL-HSGIKAPQMDDNFSYSIEEHFERQIWHYVRR 350


>gi|298248927|ref|ZP_06972731.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM
           44963]
 gi|297546931|gb|EFH80798.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM
           44963]
          Length = 383

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 117/339 (34%), Positives = 175/339 (51%), Gaps = 17/339 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  A+  +    G TS  P+V  +IV+D  VIGRG T+    PHAE+ AL EAG  
Sbjct: 3   DLEFMQQAIACAHSVEGHTSPRPAVGAVIVRDNRVIGRGATSPPYGPHAEIHALNEAGAT 62

Query: 67  A-RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           A  GA  Y TLEPC     +PPC + II  GIRRV++   DP+ RVSGRG+  L + GI 
Sbjct: 63  AASGADLYTTLEPCCIAIHTPPCTKAIIAAGIRRVIIGALDPNPRVSGRGVAQLREAGIN 122

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V  + + E    +  + T   + R ++T K A++ D  +      +  I+G  ++  VH
Sbjct: 123 VVTGIAQQETSALIRPFATYITQGRPYVTAKWAMTLDGKLATHTGDAHWISGPAARTWVH 182

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ-------EHSPMRIILDPHFKLSLDSKII 237
            LR + DAI++G GT  AD+P LT RL   Q          P+RI+L  + KL     ++
Sbjct: 183 QLRDRVDAIMIGAGTAHADNPLLTVRLTEAQRVHKRTPRQDPLRIVLSSYGKLGSHLHLL 242

Query: 238 KTALLAP--VIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSL 290
           +   LAP   ++V+E          R++ + +I          DL   L IL  +G+  L
Sbjct: 243 QEQ-LAPGTCVMVSETSSLQQREDLRQRGVQVIEVPANKTGQVDLVAALNILAQKGIMHL 301

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
           L+EGG+ +  +     L+D +  + +  +IG  G PSP+
Sbjct: 302 LLEGGSNLLGTAFGHNLIDHVAAFIAPKLIGGAGSPSPI 340


>gi|158336980|ref|YP_001518155.1| riboflavin biosynthesis protein RibD [Acaryochloris marina
           MBIC11017]
 gi|158307221|gb|ABW28838.1| riboflavin biosynthesis protein RibD [Acaryochloris marina
           MBIC11017]
          Length = 387

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 115/368 (31%), Positives = 194/368 (52%), Gaps = 16/368 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +     + M   L+ ++   G T+ NP V C+I +DG ++G G     G PHAEV AL  
Sbjct: 19  IDPHHQQMMQRCLQLAQKAAGFTTPNPLVGCVIERDGEIVGEGYHPKAGEPHAEVFALRA 78

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG++A+GATAYV+LEPC+H+GR+PPC++ +++ G+  VVV + DPD RVSG+G++ L   
Sbjct: 79  AGDKAKGATAYVSLEPCNHFGRTPPCSEALVKAGVATVVVGMVDPDPRVSGKGIERLRAA 138

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI ++  + E++ +    A++ R + +R    LK A++ D  I      S  IT  +++ 
Sbjct: 139 GIQVITGVEEADCQRVNEAFVHRILYQRPFGILKYAMTLDGKIATTAGHSAWITKEVARA 198

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNG---LQEHSPMRIILDPHFKLSLDSKIIK 238
            VH LRA  DA++VG  TV  D+P LT           ++P+R++L     L   + + +
Sbjct: 199 HVHRLRATCDAVIVGGNTVRRDNPHLTTHHKADANQPPNNPLRVVLSRTLDLPPTAHLWE 258

Query: 239 TALLAPVIIVTENDDPVLALAF-RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
           T  +AP I++T+        A+  ++ + ++  D      ++  L  + + S+L E G  
Sbjct: 259 TD-IAPTIVLTQGHPNGEGQAYLEQQGVEVVNLDELTPATVMAYLGKKELLSVLWECGGT 317

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC-------VRRDYFGSDV 350
           ++   I    V  ++ + +  ++G    PSP+  G L  N M        VR    G D 
Sbjct: 318 LSARAIADGSVQKVLAFIAPKIVGGQNAPSPV--GDLGFNKMTEALQLERVRWHIVGEDC 375

Query: 351 CLE-YIGK 357
            +E Y+ K
Sbjct: 376 LVEGYLPK 383


>gi|55981033|ref|YP_144330.1| diaminohydroxyphosphoriboxylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase RibD [Thermus thermophilus HB8]
 gi|55772446|dbj|BAD70887.1| diaminohydroxyphosphoriboxylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase (RibD)
           [Thermus thermophilus HB8]
          Length = 377

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 113/376 (30%), Positives = 188/376 (50%), Gaps = 29/376 (7%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   D RF+  AL+ +    G TS NP V  ++V++G ++G G     G PHAEV AL++
Sbjct: 1   MRDLDERFLRRALQLAERARGHTSPNPLVGAVLVREGRIVGEGFHPRAGEPHAEVFALQQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPC H+GR+PPC+  +++ G+ RVVV   + +    G GL+ L   
Sbjct: 61  AGELARGATAYVTLEPCDHFGRTPPCSLALLQAGVSRVVVAAREENPVAKG-GLERLRAG 119

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ V+  ++E+E +     +   Q +    + LK A++ D  +      +  I+   S+ 
Sbjct: 120 GVQVEAGLLEAEARAQNEVFFAVQKKGLPFVLLKAALTLDGKVAAPSGDARWISSEASRR 179

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFKLS 231
             H  R    A++VG+GTVL DDP LT R    +             P++++LD   +  
Sbjct: 180 VAHAYRQWLPAVMVGVGTVLKDDPALTVREPDFRPFPLMVEPPPLRDPLKVVLDTEARTP 239

Query: 232 LDSKIIKTALLAP----VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILV 283
             +++ +          ++ V E        A  +    ++         D ++ L  L+
Sbjct: 240 PTARLFRKGPRGEPARVLVFVGEGAPGARVSALEEAGARVVALPREGGRVDPERALAFLL 299

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-LEK-----N 337
             GV  +L+EGG  +A +F+   LVD + L+ +  ++GEG     L EG+ +E+      
Sbjct: 300 EEGVDGVLLEGGPRLAGAFLERGLVDKLALFLAPRILGEG---RGLAEGFRVERVAEALR 356

Query: 338 FMCVRRDYFGSDVCLE 353
               RR++ G ++ LE
Sbjct: 357 LRLARREWLGENLWLE 372


>gi|291522092|emb|CBK80385.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Coprococcus catus GD/7]
          Length = 371

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 125/362 (34%), Positives = 198/362 (54%), Gaps = 13/362 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG-E 65
           D R+M  AL  ++   G T+ NP V  +IVKDG VI +G     G  HAEV+A ++AG +
Sbjct: 8   DLRYMQMALDMAKLGRGYTNPNPMVGAVIVKDGQVIAKGYHHCCGQGHAEVEAFKDAGNQ 67

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +  GAT YVTLEPCSHYG++PPCA  IIE  I RVVV   DP+  V+GRG++ +   GI 
Sbjct: 68  DVTGATIYVTLEPCSHYGKTPPCADKIIEKKIGRVVVGALDPNPLVAGRGIEKIRNAGIE 127

Query: 126 VDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   + +E  I L+  ++   V K   +  K A+S D  I      S  I+   S+ +VH
Sbjct: 128 VTTGVLAEESIKLNEIFMKYIVNKEPFVLYKSAMSLDGKIATVSGESQWISCEASRKEVH 187

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL-LA 243
            LR Q  AI+VG  TVL DDP L CRL  ++   P+R+++D   ++ + ++++KTA  + 
Sbjct: 188 ELRHQYMAIMVGSQTVLDDDPMLNCRL--IEGKDPIRVVVDSSLRIPMTARLVKTARDIR 245

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299
            ++  T + D       +   + ++  + +    DLKKL   L    + S+L+EGGAA+A
Sbjct: 246 TIVACTPSADEKKIKDLQNAGVEVLSIEAKDGHVDLKKLTEELGRMQIDSILLEGGAALA 305

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
            +   + ++D + +Y +  +IG     +P+    +E     +   +   D+    IG ++
Sbjct: 306 AAAFGAGIIDKVQMYIAPKIIGGKTSRTPVGGKGVEH----LSDAWQLKDITARNIGNDI 361

Query: 360 CL 361
           C+
Sbjct: 362 CI 363


>gi|293371696|ref|ZP_06618107.1| riboflavin biosynthesis protein RibD [Bacteroides ovatus SD CMC 3f]
 gi|292633393|gb|EFF51963.1| riboflavin biosynthesis protein RibD [Bacteroides ovatus SD CMC 3f]
          Length = 351

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 120/351 (34%), Positives = 181/351 (51%), Gaps = 22/351 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + ++M   +  ++  +   S NP V  +IV DG +IG G     G  HAEV A+    +E
Sbjct: 9   EEKYMKRCIELAKNGLCNVSPNPMVGAVIVCDGRIIGEGYHIRCGEAHAEVNAIRSVKDE 68

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +  + +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP   V+GRG+Q L   G 
Sbjct: 69  SLLKHSTIYVSLEPCSHYGKTPPCANLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGR 128

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181
            V   ++E E K  +  ++T     R  ITLK A S D+ I +      P+  +  ++  
Sbjct: 129 EVTVGVLEEECKSLIRRFITFNTLHRPFITLKWAESADHFIDIERTDGKPVSLSSPLTSM 188

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH  RA++DAI+VG  T L D+P LT R      H+P+R++LD    L  DS+I    +
Sbjct: 189 LVHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDSQIFDGNV 246

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVA 299
             P +I TE   P       KKNI  I  +     LK+++  L  R + SLLVEGG  + 
Sbjct: 247 --PTLIFTEKQQP------EKKNITYITINFNHNPLKQIMEALYQRKIQSLLVEGGRQLL 298

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
            SFI++ L D   + +       G + S ++   ++ NF     ++F   +
Sbjct: 299 QSFIDNELWDEAYIEKC-----PGRLHSGVKAPQMDDNFSYSIEEHFERQI 344


>gi|237715308|ref|ZP_04545789.1| riboflavin biosynthesis protein ribD [Bacteroides sp. D1]
 gi|294643551|ref|ZP_06721357.1| riboflavin biosynthesis protein RibD [Bacteroides ovatus SD CC 2a]
 gi|294807058|ref|ZP_06765877.1| riboflavin biosynthesis protein RibD [Bacteroides xylanisolvens SD
           CC 1b]
 gi|229444617|gb|EEO50408.1| riboflavin biosynthesis protein ribD [Bacteroides sp. D1]
 gi|292641126|gb|EFF59338.1| riboflavin biosynthesis protein RibD [Bacteroides ovatus SD CC 2a]
 gi|294445757|gb|EFG14405.1| riboflavin biosynthesis protein RibD [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 345

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 124/353 (35%), Positives = 182/353 (51%), Gaps = 27/353 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + ++M   +  ++  +   S NP V  +IV DG +IG G     G  HAEV A+    +E
Sbjct: 3   EEKYMRRCIELAKNGLCNVSPNPMVGAVIVCDGRIIGEGYHIRCGEAHAEVNAIHSVKDE 62

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +  + +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP   V+GRG+Q L   G 
Sbjct: 63  SLLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGR 122

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181
            V   ++E E K  +  ++T     R  ITLK A S D+ I +      PI  +  ++  
Sbjct: 123 EVSVGVLEEECKSLIRRFITFNTLHRPFITLKWAESADHFIDIERTDGKPIVLSSPLTSM 182

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH  RA++DAI+VG  T L D+P LT R      H+P+R++LD    L  DS+I    +
Sbjct: 183 LVHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDSQIFDGNV 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVA 299
             P +I TE   P       KKNI  I  +     LK+++  L  R + SLLVEGG  + 
Sbjct: 241 --PTLIFTEKQQP------EKKNITYITINFSHNPLKQIMEALYQRKIQSLLVEGGRQLL 292

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP---------LEEGYLEKNFMCVRR 343
            SFI++ L D   + +    +   GI +P         +EE +  + +  VRR
Sbjct: 293 QSFIDNELWDEAYIEKCPSRL-HSGIKAPQMDDNFSYSIEEHFERQIWHYVRR 344


>gi|311739500|ref|ZP_07713335.1| riboflavin biosynthesis protein RibD [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305316|gb|EFQ81384.1| riboflavin biosynthesis protein RibD [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 340

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 123/340 (36%), Positives = 177/340 (52%), Gaps = 33/340 (9%)

Query: 23  GLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G TS NP V  +IV   G ++G G T   G  HAEV AL EAG++ARGATA VTLEPC+H
Sbjct: 26  GTTSPNPPVGAVIVSPAGEIVGVGATQPVGGAHAEVMALREAGDKARGATAVVTLEPCAH 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME-SEGKIFLHA 140
            GR+ PCAQ +I+ G+ RV     DP  + +G G + L++ G+ V ++ +    +  L  
Sbjct: 86  TGRTGPCAQALIDAGVARVYYLHADPTPQAAG-GAEVLARAGVDVAKLEKPPHAEDALVP 144

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +L     +R H+TLK A + D     A   S  ITG  +++ VH  RA  DAI+VG GT 
Sbjct: 145 WLFAVRTQRPHVTLKFAQTLDGFTAAADGTSQWITGEAARDWVHADRAHRDAIVVGTGTA 204

Query: 201 LADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           LAD+P LT RL+   L+ H P R+++    K  L+S     + L                
Sbjct: 205 LADNPSLTARLSDGSLRAHQPRRVVIG---KRDLESAGDAASHLR--------------- 246

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
                   + Y     +++ L  L   G   +LVEGGA +A SF+ + LVD+I  Y + +
Sbjct: 247 -------ELGYEQYDSIEEALYELYATGARDVLVEGGAGLASSFLKADLVDAISAYIAPL 299

Query: 319 VIGEGG--IPSPLEEGYLEKN-FMCVRRDYFGSDVCLEYI 355
           ++GEG   +  P+ +   E   F  V     G DV +EY+
Sbjct: 300 LLGEGRGVLAHPVTQTLAEATRFRRVGMKALGDDVLIEYV 339


>gi|330943560|gb|EGH45897.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 245

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 98/212 (46%), Positives = 129/212 (60%), Gaps = 1/212 (0%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D  +M+ AL  +R  +  T  NP V C+IV++G ++G G  A  G PHAEV AL +A
Sbjct: 6   AALDVHYMARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQA 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPCSH GR+PPCA  +IE G+ RVV  + DP+  VSGRGL  L   G
Sbjct: 66  GELARGATAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNAG 125

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++ESE +     +L R      ++ +K+A+S D    MA   S  ITG  +++ 
Sbjct: 126 IGVQCGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSA 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214
           V  LRAQS  +L G  TVLAD   LT R + L
Sbjct: 186 VQRLRAQSSVVLSGADTVLADKARLTVRPDEL 217


>gi|46199007|ref|YP_004674.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Thermus thermophilus HB27]
 gi|46196631|gb|AAS81047.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Thermus thermophilus HB27]
          Length = 377

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 114/376 (30%), Positives = 187/376 (49%), Gaps = 29/376 (7%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   D RF+  AL+ +    G TS NP V  ++V++G ++G G     G PHAEV AL E
Sbjct: 1   MRDLDERFLRRALQLAERARGHTSPNPLVGAVLVREGRIVGEGFHPRAGEPHAEVFALRE 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPC H+GR+PPC+  +++ G+ RVVV   + +    G GL+ L   
Sbjct: 61  AGELARGATAYVTLEPCDHFGRTPPCSLALLQAGVSRVVVAAREENPVAKG-GLERLRVG 119

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ V+  ++E+E +     +   Q +    + LK A++ D  +      +  I+   S+ 
Sbjct: 120 GVQVEAGLLEAEARAQNEVFFAVQKKGLPFVLLKAALTLDGKVAAPSGDARWISSEASRR 179

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFKLS 231
             H  R    A++VG+GTVL DDP LT R    +             P++++LD   +  
Sbjct: 180 VAHAYRQWLPAVMVGVGTVLKDDPALTVREPDFRPFPLMVEPPPLRDPLKVVLDTEARTP 239

Query: 232 LDSKIIKTALLAP----VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILV 283
             +++ +          ++ V E        A  +    ++         D ++ L  L+
Sbjct: 240 PTARLFRKGPRGEPARVLVFVGEGAPRARVSALEEAGARVVALPREGGRVDPERALAFLL 299

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-LEK-----N 337
             GV  +L+EGG  +A +F+   LVD + L+ +  ++GEG     L EG+ +E+      
Sbjct: 300 EEGVDGVLLEGGPRLAGAFLERGLVDKLALFLAPRILGEG---RGLAEGFRVERVAEALR 356

Query: 338 FMCVRRDYFGSDVCLE 353
               RR++ G ++ LE
Sbjct: 357 LRLARREWLGENLWLE 372


>gi|221140247|ref|ZP_03564740.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Staphylococcus aureus subsp. aureus str. JKD6009]
          Length = 347

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 109/317 (34%), Positives = 161/317 (50%), Gaps = 9/317 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           ++FM  A++ +    G T  NP V  +IVK+G ++G G     G  HAEVQAL+ A + A
Sbjct: 2   SQFMDYAIQLANMVQGQTGVNPPVGAVIVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNA 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            GAT Y+TLEPCSH+G +PPC   II+C I +VV    D  +   G   + L   GI V+
Sbjct: 62  EGATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGD--ETLRAHGIEVE 119

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + +         +   + ++   IT+K++ S D         S  IT    K  V+ LR
Sbjct: 120 CVDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLR 179

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DA+L G  TV  DDP+ T R+   +  +P+++IL     +  + +I +     P+ I
Sbjct: 180 HRHDAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWI 236

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            TEN +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  
Sbjct: 237 YTENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNY 292

Query: 308 VDSIILYRSQIVIGEGG 324
           +D  ILY +  +IG  G
Sbjct: 293 IDEFILYYAPKLIGGSG 309


>gi|15644572|ref|NP_229625.1| riboflavin-specific deaminase [Thermotoga maritima MSB8]
 gi|148270243|ref|YP_001244703.1| riboflavin biosynthesis protein RibD [Thermotoga petrophila RKU-1]
 gi|281412422|ref|YP_003346501.1| riboflavin biosynthesis protein RibD [Thermotoga naphthophila
           RKU-10]
 gi|4982410|gb|AAD36891.1|AE001819_14 riboflavin-specific deaminase [Thermotoga maritima MSB8]
 gi|147735787|gb|ABQ47127.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Thermotoga petrophila RKU-1]
 gi|281373525|gb|ADA67087.1| riboflavin biosynthesis protein RibD [Thermotoga naphthophila
           RKU-10]
          Length = 348

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 117/319 (36%), Positives = 176/319 (55%), Gaps = 19/319 (5%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
           FM  A+  ++  +G  + NP V  ++VKDG +I  G   Y G PHAE  A+E A   GE+
Sbjct: 5   FMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARKKGED 64

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            RGAT  VTLEPC H+G++PPC   IIE GI+ VV+   DP+  VSG G++     GI +
Sbjct: 65  LRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNP-VSGNGVEKFRNHGIEV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           ++ ++E E K     ++T   +KR  + LK A + D  I      S  IT  + + +VH 
Sbjct: 124 IEGVLEEEVKKLCEFFITYVTKKRPFVALKYASTLDGKIADHRGDSKWITDKL-RFKVHE 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT-ALLAP 244
           +R    A+LVG GTVL D+P+LTCRL   +  +P+R+ILD   K  L  K+ +     A 
Sbjct: 183 MRNIYSAVLVGAGTVLKDNPQLTCRLK--EGRNPVRVILDR--KGVLSGKVFRVFEENAR 238

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           VI+ TE+++     A    ++     DC  ++ +L  L  R + S+LVEGG+ V   F++
Sbjct: 239 VIVFTESEE-----AEYPPHVEKALSDC-SVESILRNLYERDIDSVLVEGGSKVFSEFLD 292

Query: 305 SRLVDSIILYRSQIVIGEG 323
               D +  + S  + G+G
Sbjct: 293 H--ADVVFGFYSTKIFGKG 309


>gi|289427738|ref|ZP_06429450.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes J165]
 gi|289159229|gb|EFD07421.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes J165]
 gi|313808724|gb|EFS47178.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL087PA2]
 gi|313817904|gb|EFS55618.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL046PA2]
 gi|313819816|gb|EFS57530.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL036PA1]
 gi|313823306|gb|EFS61020.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL036PA2]
 gi|313824948|gb|EFS62662.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL063PA1]
 gi|314925876|gb|EFS89707.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL036PA3]
 gi|314960753|gb|EFT04854.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL002PA2]
 gi|314979409|gb|EFT23503.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL072PA2]
 gi|314986170|gb|EFT30262.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL005PA2]
 gi|314988782|gb|EFT32873.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL005PA3]
 gi|315083284|gb|EFT55260.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL027PA2]
 gi|315086943|gb|EFT58919.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL002PA3]
 gi|315089869|gb|EFT61845.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL072PA1]
 gi|327325060|gb|EGE66866.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL096PA3]
 gi|327449258|gb|EGE95912.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL013PA2]
 gi|328756397|gb|EGF70013.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL020PA1]
          Length = 331

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 109/297 (36%), Positives = 158/297 (53%), Gaps = 28/297 (9%)

Query: 28  NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87
           NP V C+IV +  VIG+G     G PHAEV+AL +AG++ RGATA VTLEPC H GR+ P
Sbjct: 25  NPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDVRGATAVVTLEPCHHTGRTGP 84

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT-RQV 146
           C+  +++ GI RVV+   DP+   SG G QWL   G+ V   + SE    L+A  T  Q+
Sbjct: 85  CSHALVDAGIARVVIAQSDPNPVASG-GEQWLRTHGVEVVTGVLSEEATALNADWTFSQI 143

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
            +R  +  K A S D         S  ITG  +++QV L RA+  AI+VG GT LAD+P 
Sbjct: 144 HRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNPR 203

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
           LT RL G+  H P+R+++                            +P      R  + +
Sbjct: 204 LTVRLPGV-THQPLRVVVG-------------------------MREPPAGCHLRDDSAS 237

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            ++    D  ++L +L  RGV  + +EGG  +A +F+ + LVD +I + +  V+G G
Sbjct: 238 TLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLVDEVIAHMAPTVLGGG 294


>gi|260775295|ref|ZP_05884192.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608476|gb|EEX34641.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 368

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 116/331 (35%), Positives = 171/331 (51%), Gaps = 24/331 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D + MS A+  ++  +  T+ NP+V C+I  D  ++G G     G PHAEV AL  AG++
Sbjct: 8   DYQMMSRAIELAKGGIYTTAPNPNVGCVITLDDDIVGEGFHYRAGEPHAEVHALRMAGDK 67

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           + GATAYVTLEPCSHYGR+PPCA+ +I+  + +V+  ++DP+ +V+GRG++ L   GI V
Sbjct: 68  SVGATAYVTLEPCSHYGRTPPCAEGLIKAKVAKVICAMEDPNPQVAGRGIKMLCDAGIEV 127

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++ES+      A++ R       + LK+A S D    ++   S  IT   ++  V  
Sbjct: 128 QVGLLESDAMALNSAFIKRMKTGMPFVQLKMAASFDGQTALSNGQSQWITSPQARQDVQN 187

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
            RAQ+ AIL    TV+ D+  L  R   L E             P+R++LD   +LS + 
Sbjct: 188 YRAQAGAILSTSKTVIEDNASLNVRWYELPESVQAKLPESEVRQPVRVVLDRQQQLSSEL 247

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-RGVTSLLVE 293
           K   T      I+V+   D V  L    + I        DLK     LV    +  L VE
Sbjct: 248 KFYSTD--GERIVVSAQGD-VAPLLNDSEQI--------DLKSTFANLVSHHNINHLWVE 296

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            GA +A S I   LVD +ILY +  ++G  G
Sbjct: 297 AGATLASSLIKEGLVDELILYLAPKIMGSDG 327


>gi|221135084|ref|ZP_03561387.1| riboflavin biosynthesis protein RibD [Glaciecola sp. HTCC2999]
          Length = 381

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 119/344 (34%), Positives = 179/344 (52%), Gaps = 38/344 (11%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+FD   M+ ALR ++  +   + NP V C+I  DG +IG G     G  HAEV AL + 
Sbjct: 6   SAFDYAMMARALRLAKQGIYTAAPNPMVGCVITLDGEIIGEGHHQQAGTAHAEVNALWQV 65

Query: 64  GE----------EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            E          + + ATAYVTLEPCSH GR+ PCA  +I+  I RVV+ + DP  +VSG
Sbjct: 66  NELIAQGKLVATQLKEATAYVTLEPCSHTGRTGPCADALIDAYIGRVVIAMQDPYSQVSG 125

Query: 114 RGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172
           RG+  L +  I V+  ++ +E       +L+    +R  +T K+A S D  I +    S 
Sbjct: 126 RGIAKLQRANIQVEVGLLAAESNALNRHFLSLVERQRPFVTAKLATSLDGKIALDNGVSQ 185

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH--------------S 218
            ITG  ++  V   RAQ   IL G  TV+ADDP+L  RL  L E+               
Sbjct: 186 WITGPEARQDVQAHRAQHMCILTGSQTVIADDPQLNVRLAELPENVQQTLAANPLAQYTQ 245

Query: 219 PMRIILDPHFKLSLDSKIIKTA-LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277
           P+R I+D    +S   +I++ A   AP  + T ++ P+        N N     C DL  
Sbjct: 246 PLRAIIDSQRLISEQYQIVRDANTQAPTHVFTPDNIPL--------NGN---GKC-DLSA 293

Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           +L  L  +G+ S+ VE GA +  + +N+RL+D +I+Y++ +++G
Sbjct: 294 VLDALGQQGINSVWVEAGAGLVGAMLNARLLDELIIYQAPLLLG 337


>gi|328675280|gb|AEB27955.1| Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Francisella cf. novicida 3523]
          Length = 355

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 114/334 (34%), Positives = 170/334 (50%), Gaps = 23/334 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + D  +M  AL  +       S NP V C+IVK+G +I  G     G  HAEV AL +
Sbjct: 1   MKNIDKYYMQQALSLANRGRLTVSPNPMVGCIIVKNGTIISEGWHETVGKAHAEVHALTK 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
            G++A+GAT YVTLEPC H+GR+PPC   +I+ GI++VV+   DP+ +V+G+G++ L   
Sbjct: 61  VGDKAKGATVYVTLEPCCHHGRTPPCTDTLIKAGIKKVVIATLDPNPKVAGKGVKKLKDA 120

Query: 123 GIIV-----DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           GI V     ++  +   KIF H     Q  K+  +  K A+S D  + +    S  I+  
Sbjct: 121 GITVEVGLLEKQAQELNKIFFH----YQKTKKPFVYAKWAMSLDGKVAVNNDDSKKISSH 176

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL------S 231
            +    H LR   DAIL+G  T+  D+P L  R+N  +   P R IL  H          
Sbjct: 177 QAFINTHQLRNICDAILIGKQTLTDDNPSLDVRININKIKHPTRFILSNHLTTINHNWQV 236

Query: 232 LDSKIIKTALLAPVI---IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           LD    KT  +   I   I T+ +   +      ++ N + C    L  LL  +   G+T
Sbjct: 237 LDQSHAKTIFICSKISAQIATKLNQLGIEYWLLPQSQNQV-C----LNTLLEKMGNIGIT 291

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
           SLLVEGG+   +SFIN +LV+    Y + ++I +
Sbjct: 292 SLLVEGGSKTLNSFINQKLVNEFYTYLAPVIIAD 325


>gi|251790670|ref|YP_003005391.1| riboflavin biosynthesis protein RibD [Dickeya zeae Ech1591]
 gi|247539291|gb|ACT07912.1| riboflavin biosynthesis protein RibD [Dickeya zeae Ech1591]
          Length = 370

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 121/333 (36%), Positives = 175/333 (52%), Gaps = 24/333 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL  +R     T+ NP+V C+IV+DG ++G G     G PHAEV AL  AG++
Sbjct: 6   DEFYMARALELARRGRFTTAPNPNVGCVIVRDGEIVGEGYHQKAGEPHAEVHALRMAGDK 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 66  AHGATAYVTLEPCSHHGRTPPCADALVAAGVARVVAAMQDPNPQVAGRGLHRLQQAGIAV 125

Query: 127 DR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
               +ME   KI    +L R      ++ LK+  S D    MA   S  IT   S+  V 
Sbjct: 126 HHGVLMEQAEKIN-RGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQSRQDVQ 184

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLD 233
             RAQS AIL    TVLADDP LT R + L E +           P+R+I+D   +++  
Sbjct: 185 RFRAQSSAILSSSATVLADDPSLTVRWSELDEDTQRLYPESAMRQPVRVIVDSQSRVTPQ 244

Query: 234 SKIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
             ++       +    ++D    D V  L        I      DL  L+  L  R + +
Sbjct: 245 HCLVNQPGQTWLARARQDDQSWPDGVEQLEMPLHGGGI------DLVGLMMTLGKRQINT 298

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
           + VE G  +A + + + +VD +I+Y +  ++G+
Sbjct: 299 VWVEAGPRLAGALLQAGVVDELIVYLAPKLLGD 331


>gi|71892014|ref|YP_277744.1| pyrimidine deaminase/reductase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71796120|gb|AAZ40871.1| pyrimidine deaminase/reductase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 379

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 118/337 (35%), Positives = 170/337 (50%), Gaps = 20/337 (5%)

Query: 7   DARFMSAALRFSRWHVGLTST-NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D RF++ AL+ + W    T+  NP+V C+IV++  +IG G     G  HAE+ AL  AG 
Sbjct: 9   DKRFLTRALQLA-WKGRFTTMPNPNVGCVIVRNNKIIGEGYHIRAGEAHAEIHALRIAGN 67

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            A+GATAY+TLEPCSHYGR+PPC   +I  GI+RVVV + DP     GRGL  L Q GI 
Sbjct: 68  LAQGATAYITLEPCSHYGRTPPCTTALINAGIKRVVVAMLDPHFYARGRGLHLLQQAGIE 127

Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   +M  E +     +L R       + LK+A S D    M+   S  IT   ++  V 
Sbjct: 128 VQHSLMLPEAESINRGFLKRIRTGFPWVKLKLAASLDGRTAMSSGESKWITSIQARQDVP 187

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLSLD 233
             RA+SD IL   GTVLADDP+L  R               Q   P+R+I+D   ++   
Sbjct: 188 RFRAESDVILSTAGTVLADDPKLNVRWECFSDEMKRIYANNQIRQPLRVIIDSANRVLPT 247

Query: 234 SKIIKTALLAPVIIVTENDD----PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
            ++I+      +++V    D    P         +IN       +L +L+  L  R + +
Sbjct: 248 HRVIRYE--GKILLVRLKKDHRNWPSSVEQLLLSSINCHGHHRINLTELMQHLGYREINN 305

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           + VE GA  +   ++  LVD +ILY++   +G    P
Sbjct: 306 IWVEAGATFSGVLLDIGLVDELILYQAIKFLGSDARP 342


>gi|283471035|emb|CAQ50246.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 347

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 108/317 (34%), Positives = 161/317 (50%), Gaps = 9/317 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           ++FM  A++ +    G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A
Sbjct: 2   SQFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNA 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            GAT Y+TLEPCSH+G +PPC   II+C I +VV    D  +   G   + L   GI V+
Sbjct: 62  EGATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGD--ETLRDHGIEVE 119

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + +         +   + ++   IT+K++ S D         S  IT    K  V+ LR
Sbjct: 120 CVDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLR 179

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DA+L G  TV  DDP+ T R+   +  +P+++IL     +  + +I +     P+ I
Sbjct: 180 HRHDAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWI 236

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            TEN +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  
Sbjct: 237 YTENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNY 292

Query: 308 VDSIILYRSQIVIGEGG 324
           +D  ILY +  +IG  G
Sbjct: 293 IDEFILYYAPKLIGGSG 309


>gi|295131277|ref|YP_003581940.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           SK137]
 gi|291375861|gb|ADD99715.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           SK137]
 gi|313773159|gb|EFS39125.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL074PA1]
 gi|313810307|gb|EFS48023.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL083PA1]
 gi|313830202|gb|EFS67916.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL007PA1]
 gi|313833124|gb|EFS70838.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL056PA1]
 gi|314972940|gb|EFT17036.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL053PA1]
 gi|314975459|gb|EFT19554.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL045PA1]
 gi|314984254|gb|EFT28346.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL005PA1]
 gi|315096643|gb|EFT68619.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL038PA1]
 gi|327325313|gb|EGE67118.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL096PA2]
 gi|327443828|gb|EGE90482.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL043PA1]
 gi|327449140|gb|EGE95794.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL043PA2]
 gi|328761071|gb|EGF74621.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL099PA1]
          Length = 331

 Score =  176 bits (446), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 109/297 (36%), Positives = 158/297 (53%), Gaps = 28/297 (9%)

Query: 28  NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87
           NP V C+IV +  VIG+G     G PHAEV+AL +AG++ARGATA VTLEPC H GR+ P
Sbjct: 25  NPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDARGATAVVTLEPCHHTGRTGP 84

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT-RQV 146
           C+  +++ GI RVV+   DP+   SG G QWL   G+ V   + SE    L+A  T  Q+
Sbjct: 85  CSHALVDAGIARVVIAQSDPNPVASG-GEQWLRTHGVEVVTGVLSEEATALNADWTFSQI 143

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
            +R  +  K A S D         S  IT   +++QV L RA+  AI+VG GT LAD+P 
Sbjct: 144 HRRPRVCWKYAASLDGRSAAPDGTSQWITAEQARHQVQLGRARCGAIIVGTGTALADNPR 203

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
           LT RL G+  H P+R+++                            +P      R  + +
Sbjct: 204 LTVRLPGV-THQPLRVVVG-------------------------MREPPAGCHLRDDSAS 237

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            ++    D  ++L +L  RGV  + +EGG  +A +F+ + LVD +I + +  V+G G
Sbjct: 238 TLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLVDEVIAHMAPTVLGGG 294


>gi|330685448|gb|EGG97103.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
           VCU121]
          Length = 347

 Score =  176 bits (446), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 108/317 (34%), Positives = 164/317 (51%), Gaps = 9/317 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           ++FM+ A++ ++   G T  NP V  ++VKDG ++G G     G  HAEVQAL+ A  EA
Sbjct: 2   SKFMNYAIQLAQMVDGQTGVNPPVGSVVVKDGRIVGIGAHLRKGDKHAEVQALDMAQSEA 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           +GAT YV+LEPC+H+G +PPC   IIE GI++V+  V   D  +  +G   L   GI V+
Sbjct: 62  KGATIYVSLEPCTHHGSTPPCVDKIIEAGIQKVIYAV--KDTTLISKGDDILKNAGIEVE 119

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
               +        + T +      +T+K++ S D         S  IT    K  V+ LR
Sbjct: 120 FQYNAVAAQLYQDFFTAKRNGIPELTVKVSASLDGKQATDDGESKWITNKDVKKDVYQLR 179

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
              DA+L G  T+ ADDP  T R+   +   P+R+IL    KL    ++      +P+ I
Sbjct: 180 HSHDAVLTGRKTIEADDPLYTTRIADGKH--PIRVILSKSGKLDFGQQLFHDN-ASPIWI 236

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            TEN +    L     N+ IIY +  ++K +L  L  +G+  LLVE G  +   F+ S  
Sbjct: 237 YTENKN----LTVDNSNVTIIYMEQCEIKSILKDLYHKGIGKLLVEAGPEITSEFLQSDH 292

Query: 308 VDSIILYRSQIVIGEGG 324
           +D ++LY +  +IG  G
Sbjct: 293 LDHLVLYFAPKIIGGSG 309


>gi|332676151|gb|AEE72967.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes 266]
          Length = 323

 Score =  176 bits (445), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 109/297 (36%), Positives = 158/297 (53%), Gaps = 28/297 (9%)

Query: 28  NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87
           NP V C+IV +  VIG+G     G PHAEV+AL +AG++ RGATA VTLEPC H GR+ P
Sbjct: 17  NPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDVRGATAVVTLEPCHHTGRTGP 76

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT-RQV 146
           C+  +++ GI RVV+   DP+   SG G QWL   G+ V   + SE    L+A  T  Q+
Sbjct: 77  CSHALVDAGIARVVIAQSDPNPVASG-GEQWLRTHGVEVVTGVLSEEATALNADWTFSQI 135

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
            +R  +  K A S D         S  ITG  +++QV L RA+  AI+VG GT LAD+P 
Sbjct: 136 HRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNPR 195

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
           LT RL G+  H P+R+++                            +P      R  + +
Sbjct: 196 LTVRLPGVT-HQPLRVVVG-------------------------MREPPAGCHLRDDSAS 229

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            ++    D  ++L +L  RGV  + +EGG  +A +F+ + LVD +I + +  V+G G
Sbjct: 230 TLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLVDEVIAHMAPTVLGGG 286


>gi|326201832|ref|ZP_08191702.1| riboflavin biosynthesis protein RibD [Clostridium papyrosolvens DSM
           2782]
 gi|325987627|gb|EGD48453.1| riboflavin biosynthesis protein RibD [Clostridium papyrosolvens DSM
           2782]
          Length = 367

 Score =  176 bits (445), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 122/359 (33%), Positives = 193/359 (53%), Gaps = 19/359 (5%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  A   S+   G T+ NP V  +IVKDG +I  G     G  HAEV A + A  +  G
Sbjct: 7   YMKRAFEISKGGWGRTNPNPLVGAVIVKDGEIISEGFHEALGGAHAEVCAFQNATSDISG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           AT YV LEPCSHYGR+PPCA+ I E GI+ VVV + DP+ +VSG+G+Q L    I ++  
Sbjct: 67  ATIYVNLEPCSHYGRTPPCAKAIAESGIKEVVVAMVDPNPKVSGKGIQILKDANINVIVG 126

Query: 129 MMESEGK----IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           ++E E +    IF+H Y+T+Q+     + +K A++ D  I      S  I+   S+  VH
Sbjct: 127 VLEEEARRLNEIFIH-YITKQL---PFVIMKTAMTLDGKIASVTGDSRWISSEPSREYVH 182

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            +R +  +I+VG+ T++ D+P LT R +      P+RI++D   ++ +DS++I     A 
Sbjct: 183 KIRNRVSSIMVGVNTIIKDNPSLTARPSSGDGIDPVRIVVDSRGRIPMDSRVINGDSNAG 242

Query: 245 VIIVTE---NDDPVLALAFRKKNI--NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           +I+ T    N D    L  R   I   I      +L +L+  L    + S+L+EGG  + 
Sbjct: 243 LILATTDRINKDKETQLLSRGVRIIKTIEKSGKVNLGELMRELYKLEIDSVLLEGGGNLN 302

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPL-EEGYLE-KNFMC---VRRDYFGSDVCLE 353
            S + + +V+ ++ + S  +IG     +P+  EG  E K+ +    +R + F  DV +E
Sbjct: 303 FSALEAGIVNKVMTFVSPKIIGGSSAVTPVGGEGIEEMKDAIALSDIRVEGFDRDVLIE 361


>gi|328676184|gb|AEB27054.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Francisella cf. novicida Fx1]
          Length = 355

 Score =  176 bits (445), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 118/351 (33%), Positives = 173/351 (49%), Gaps = 18/351 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + D  +M  AL  +       S NP V C+IVK+G +I  G     G  HAEV AL +
Sbjct: 1   MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALTK 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A ++A+GATAYVTLEPC H+GR+PPC   II+ GI++V++   DP+ +V+G+G++ L   
Sbjct: 61  AVDKAKGATAYVTLEPCCHHGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120

Query: 123 GIIV-----DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           GI V     ++  +   KIF H     Q  K+  +  K A+S D  I +    S  I+  
Sbjct: 121 GITVEVGLLEKQAQELNKIFFH----YQTTKKPFVYGKWAMSLDGKIAVNDGDSKKISSH 176

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            +    H LR   DAIL+G  T++ D+P L  R+N  +   P R IL  H      +  +
Sbjct: 177 QAFVNTHELRNICDAILIGKQTLIDDNPSLNVRININKIKHPTRFILANHLTTINHNWRV 236

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVE 293
                A  I V       +A    +  I             L  LL  +   G+TSLLVE
Sbjct: 237 LDQRHAKTIFVCSKISAQVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGNIGITSLLVE 296

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           GG    +SFIN +LV+    Y + ++I +     P ++  L  N + VR D
Sbjct: 297 GGNKTLNSFINQKLVNEFYTYLAPVIIADY---KPKQQ--LSFNQISVRED 342


>gi|56696631|ref|YP_166992.1| riboflavin biosynthesis protein RibD [Ruegeria pomeroyi DSS-3]
 gi|56678368|gb|AAV95034.1| riboflavin biosynthesis protein RibD [Ruegeria pomeroyi DSS-3]
          Length = 364

 Score =  176 bits (445), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 134/362 (37%), Positives = 200/362 (55%), Gaps = 11/362 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S  DAR+M+ AL   R   G+   NP+V C+IV +G ++GRG T  GG PHAEV AL +
Sbjct: 1   MSMSDARYMALALSLGRRGQGVCWPNPAVGCVIVNEGRIVGRGWTQPGGRPHAEVVALAQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  ARGATAYVTLEPC+H+G++PPCA+ +I  G+ RVV  ++D D RV+G G + L + 
Sbjct: 61  AGGAARGATAYVTLEPCAHHGKTPPCAEALIAAGVARVVAAIEDCDPRVAGNGFEMLRRA 120

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V   + E      L  +  +    R  +TLK+A S D  I  A   S  ITG  ++ 
Sbjct: 121 GIEVSVGIGEDAAARDLAGFFLKTELGRPWVTLKLASSFDGRIATASGESQWITGPEARR 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH +RA+ DA+LVG GT  +DDP LT R  G+ +  P+R+++  +  L L S++ +TA 
Sbjct: 181 AVHAMRARHDAVLVGAGTARSDDPSLTVRDMGVAQQ-PVRVVVSRYLDLPLMSQLARTAR 239

Query: 242 LAPVIIV-TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
             PV +      D     A+      +I C           LL  L G+G+T +  EGGA
Sbjct: 240 QVPVWLCHGPGVDGDRVRAWEGTGARLIPCAVEAGQISATDLLRQLGGQGLTRVFCEGGA 299

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
           ++A S + + +VD ++ + + + IG  G+P+     LE+      F  +     G+D+  
Sbjct: 300 SLAASLLAADMVDELVGFTAGLAIGAEGLPAVGVLGLEQLSEAARFDLIETRAIGADILH 359

Query: 353 EY 354
            +
Sbjct: 360 RW 361


>gi|289209046|ref|YP_003461112.1| riboflavin biosynthesis protein RibD [Thioalkalivibrio sp. K90mix]
 gi|288944677|gb|ADC72376.1| riboflavin biosynthesis protein RibD [Thioalkalivibrio sp. K90mix]
          Length = 396

 Score =  176 bits (445), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 123/354 (34%), Positives = 180/354 (50%), Gaps = 43/354 (12%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D R M+ AL  +         NP V C++V++G V+G G+    G  HAEV AL  AGE 
Sbjct: 12  DRRHMARALELADLGRFSADPNPRVGCVLVREGEVVGEGLHWRAGESHAEVNALRAAGEA 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGAT YVTLEPCSH+GR+PPC + +I+ G+ RVV+ + DP+ +V G G++ L   GI V
Sbjct: 72  ARGATVYVTLEPCSHHGRTPPCTEALIQAGVARVVIAMQDPNPQVCGGGMEALRAAGIEV 131

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  ++E+E +     ++ R  + R  + +K+A S D    MA   S  ITG  ++  V L
Sbjct: 132 ETGVLEAEARALNPGFVQRMEQGRPWVRIKLAASLDGRTAMASGESRWITGEAARRDVQL 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-----------------NGLQEHSPMRIILDPHF 228
            RA++ AIL G GTV+ADDP LT RL                 + L    P+R+ILD   
Sbjct: 192 WRARAGAILTGSGTVVADDPRLTVRLKPHQLAAQAGFPDDPHYSDLSTRQPLRVILDARL 251

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY---CDCR------------ 273
           +    ++I+K+    PV I+T  D      A R    + +     D R            
Sbjct: 252 RTPPGAQILKS---GPVWILTGPD------AARSPAADTLRGHGADVRPIALASDSPDGG 302

Query: 274 -DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            DL ++L  L    V  L VE G  +A +      VD  +LY++ +++G    P
Sbjct: 303 LDLGEVLAELARAEVNELHVESGPGLAGALARGGWVDEWLLYQAPLLLGSSARP 356


>gi|21283440|ref|NP_646528.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486593|ref|YP_043814.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|297207517|ref|ZP_06923953.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300911601|ref|ZP_07129045.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|21204881|dbj|BAB95576.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49245036|emb|CAG43497.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|296887853|gb|EFH26750.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300887022|gb|EFK82223.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus TCH70]
          Length = 347

 Score =  176 bits (445), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 108/317 (34%), Positives = 161/317 (50%), Gaps = 9/317 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           ++FM  A++ +    G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A
Sbjct: 2   SQFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNA 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            GAT Y+TLEPCSH+G +PPC   II+C I +VV    D  +   G   + L   GI V+
Sbjct: 62  EGATIYITLEPCSHFGSTPPCVNKIIDCKITKVVYATKDNSLDTHGD--ETLRAHGIEVE 119

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + +         +   + ++   IT+K++ S D         S  IT    K  V+ LR
Sbjct: 120 CVDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLR 179

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DA+L G  TV  DDP+ T R+   +  +P+++IL     +  + +I +     P+ I
Sbjct: 180 HRHDAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWI 236

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            TEN +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  
Sbjct: 237 YTENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNY 292

Query: 308 VDSIILYRSQIVIGEGG 324
           +D  ILY +  +IG  G
Sbjct: 293 IDEFILYYAPKLIGGSG 309


>gi|57652067|ref|YP_186652.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus COL]
 gi|151221874|ref|YP_001332696.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161509986|ref|YP_001575645.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|258450849|ref|ZP_05698907.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A5948]
 gi|262050319|ref|ZP_06023164.1| riboflavin specific deaminase [Staphylococcus aureus D30]
 gi|262053078|ref|ZP_06025250.1| riboflavin specific deaminase [Staphylococcus aureus 930918-3]
 gi|284024817|ref|ZP_06379215.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Staphylococcus aureus subsp. aureus 132]
 gi|294849930|ref|ZP_06790669.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9754]
 gi|304380637|ref|ZP_07363309.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|57286253|gb|AAW38347.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus COL]
 gi|150374674|dbj|BAF67934.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368795|gb|ABX29766.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|257861473|gb|EEV84276.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A5948]
 gi|259159032|gb|EEW44104.1| riboflavin specific deaminase [Staphylococcus aureus 930918-3]
 gi|259161579|gb|EEW46176.1| riboflavin specific deaminase [Staphylococcus aureus D30]
 gi|269941247|emb|CBI49636.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus
           subsp. aureus TW20]
 gi|294823269|gb|EFG39699.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9754]
 gi|304340832|gb|EFM06760.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|315195936|gb|EFU26300.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Staphylococcus aureus subsp. aureus CGS01]
 gi|329314447|gb|AEB88860.1| Riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329727002|gb|EGG63459.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 347

 Score =  175 bits (444), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 108/317 (34%), Positives = 161/317 (50%), Gaps = 9/317 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           ++FM  A++ +    G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A
Sbjct: 2   SQFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNA 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            GAT Y+TLEPCSH+G +PPC   II+C I +VV    D  +   G   + L   GI V+
Sbjct: 62  EGATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGD--ETLRAHGIEVE 119

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + +         +   + ++   IT+K++ S D         S  IT    K  V+ LR
Sbjct: 120 CVDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLR 179

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DA+L G  TV  DDP+ T R+   +  +P+++IL     +  + +I +     P+ I
Sbjct: 180 HRHDAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWI 236

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            TEN +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  
Sbjct: 237 YTENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNY 292

Query: 308 VDSIILYRSQIVIGEGG 324
           +D  ILY +  +IG  G
Sbjct: 293 IDEFILYYAPKLIGGSG 309


>gi|149927761|ref|ZP_01916013.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
           C-terminal [Limnobacter sp. MED105]
 gi|149823587|gb|EDM82817.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
           C-terminal [Limnobacter sp. MED105]
          Length = 377

 Score =  175 bits (444), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 115/338 (34%), Positives = 177/338 (52%), Gaps = 23/338 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D  +M  AL  +      T+ NP V C+ V+DG+ I  G  A  G  HAEVQA+ ++
Sbjct: 5   SPTDEHWMQHALNLAWKGQYSTTPNPRVGCVFVRDGVAIAEGFHAKAGEGHAEVQAIADS 64

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G    G+TAYVTLEPC+H+GR+ PCA+ ++  G+ RVV  V DP+  VSG+G+  L 
Sbjct: 65  RARGVSLAGSTAYVTLEPCAHHGRTGPCAEALVATGVARVVAAVLDPNPLVSGKGMAILQ 124

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI     ++  + +     + +R   +R  + LK+A S D +  +    S  ITG  +
Sbjct: 125 AAGIETAHGVLIEQARWINRGFFSRMERQRPWVRLKVASSADGISALNNGASQWITGEAA 184

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIK 238
           +   H LRAQ+ A+L GIGTV AD+P+L  R  G+  E  P+++I+D   ++S D+++++
Sbjct: 185 RLHGHHLRAQACAVLSGIGTVKADNPQLNVR--GIDTERQPLKVIVDSKLEISPDARLLQ 242

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC-------------RDLKKLLTILVGR 285
           +  +  +I  TE   P   L       NI   +               DL +LL  L  R
Sbjct: 243 SGRV--LIAHTEPHRPGW-LTTHPNAANIEALNVAPVAAGLHAGKVKTDLLRLLQELAQR 299

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           G+  L +E G  +  SF+ + LVD I+ Y +   +G G
Sbjct: 300 GINELHLEAGFGLNGSFLQAGLVDEIVQYIAPRFLGPG 337


>gi|317969093|ref|ZP_07970483.1| riboflavin biosynthesis protein ribD
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           [Synechococcus sp. CB0205]
          Length = 371

 Score =  175 bits (444), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 109/300 (36%), Positives = 167/300 (55%), Gaps = 16/300 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEE 62
           SS    +M  AL+ +    G TS NP V C+++ + G ++G G     G PHAEV AL +
Sbjct: 14  SSAWRPWMQRALQLAALGAGRTSPNPLVGCVVLDRQGALVGEGFHRRAGTPHAEVHALSQ 73

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+G TA V+LEPC H+GR+PPC++ +I  G+RRVVV + DPD RV+G G+  L   
Sbjct: 74  AGERAQGGTAIVSLEPCCHHGRTPPCSEALIAAGVRRVVVAMRDPDPRVAGGGIAQLQAA 133

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI ++  + E+E +    +++ R    R    LK A+S D    +    S  I+G  ++ 
Sbjct: 134 GIEVISGVCEAEAQALNRSFIQRVQTGRPWGILKWAMSLDGRTALPNGASQWISGPPARA 193

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH LRAQ DA+LVG GTV AD+P LT R  G +   P+R++L     L  D+++   + 
Sbjct: 194 WVHQLRAQCDAVLVGGGTVRADNPLLTSR--GQRSPEPLRVVLSRSLDLPQDTQLWDQS- 250

Query: 242 LAPVIIVTENDDPVLALAFRKKNIN------IIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
           LA  +++  +  P    A R++ ++      +   +C+  +  L +L  RG   +L E G
Sbjct: 251 LAQTLVLHGSKAP----AERQQQLDRLGVEHLALPECQP-RAALELLAQRGCNQVLWECG 305


>gi|282927316|ref|ZP_06334937.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9765]
 gi|282592080|gb|EFB97105.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9765]
          Length = 347

 Score =  175 bits (444), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 108/317 (34%), Positives = 161/317 (50%), Gaps = 9/317 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           ++FM  A++ +    G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A
Sbjct: 2   SQFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNA 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            GAT Y+TLEPCSH+G +PPC   II+C I +VV    D  +   G   + L   GI V+
Sbjct: 62  EGATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGD--ETLRAHGIEVE 119

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + +         +   + ++   IT+K++ S D         S  IT    K  V+ LR
Sbjct: 120 CVDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLR 179

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DA+L G  TV  DDP+ T R+   ++  P+++IL     +  + +I +     P+ I
Sbjct: 180 HRHDAVLTGRRTVELDDPQYTTRIQDGKK--PIKVILSKSGNIHFNQQIYQDE-STPIWI 236

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            TEN +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  
Sbjct: 237 YTENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNY 292

Query: 308 VDSIILYRSQIVIGEGG 324
           +D  ILY +  +IG  G
Sbjct: 293 IDEFILYYAPKLIGGSG 309


>gi|167626935|ref|YP_001677435.1| pyrimidine reductase/pyrimidine deaminase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167596936|gb|ABZ86934.1| pyrimidine reductase/pyrimidine deaminase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 356

 Score =  175 bits (444), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 117/337 (34%), Positives = 171/337 (50%), Gaps = 31/337 (9%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + +  +M  AL  +       S NP V C+IVK+G +I  G     G  HAE+ AL++
Sbjct: 1   MKNIENYYMQQALTLANRGRLSVSPNPMVGCIIVKNGAIISEGWHEAVGEAHAEIYALKK 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG++A+GATAYVTLEPC H+GR+PPC   +I  GI++VVV   DP+  V+G+G+Q L   
Sbjct: 61  AGDKAKGATAYVTLEPCCHHGRTPPCTDALIRAGIQKVVVATLDPNPLVAGKGIQKLKDA 120

Query: 123 GI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           GI     I+ +  + + KIF H     Q  ++  +  K A+S D  I + G  S  I+  
Sbjct: 121 GIEVKVGILQKQAQEQNKIFFH----YQKTQKPFVYAKWAMSLDGKIAVNGNDSKKISSK 176

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIIL-------DPHFKL 230
            +    H LR   DAIL+G  T++ D+P L  R+   ++  P+R I+       D  +K+
Sbjct: 177 EAFVDTHQLRNICDAILIGKQTLIDDNPGLDVRIQLSKKKHPVRFIISNNLSEVDKSWKV 236

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK------KLLTILVG 284
            LD    KT  +   I           +A    NI I Y      K       LL  +  
Sbjct: 237 -LDQNHAKTIFVCSKISTQ--------VANELDNIGIEYWLLPTFKGQVCLDSLLNKMGQ 287

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            G+TSLLVEGG     +FIN +L++    Y S +VI 
Sbjct: 288 TGITSLLVEGGKKTLENFINQKLINEFATYLSPVVIA 324


>gi|148983580|ref|ZP_01816899.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
           SP3-BS71]
 gi|147923727|gb|EDK74839.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
           SP3-BS71]
          Length = 360

 Score =  175 bits (444), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 170/316 (53%), Gaps = 7/316 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A++ ++   G  + NP V  +IVKD  +IG+G   + G PHAE  AL+   +   GA
Sbjct: 1   MKLAIKLAQKGAGYVNPNPMVGAIIVKDNHIIGQGYHEFFGGPHAERNALKNCRKSPVGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129
           T YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + V   +
Sbjct: 61  TLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQVTVGI 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E+E    + ++     +   ++ +K A+S D  I      S  IT   ++  VH LR  
Sbjct: 121 LENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQLRHY 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
             AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA      I T
Sbjct: 181 VSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKTYIAT 238

Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
            ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S +  
Sbjct: 239 SSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWSALEQ 298

Query: 306 RLVDSIILYRSQIVIG 321
           ++VD + +Y +  + G
Sbjct: 299 QIVDELKIYIAPKIFG 314


>gi|74318186|ref|YP_315926.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Thiobacillus denitrificans ATCC 25259]
 gi|74057681|gb|AAZ98121.1| Riboflavin biosynthesis protein RibD
           diaminohydroxyphosphoribosylaminopyrimid ine deaminase +
           5-amino-6-(5- phosphoribosylamino)uracil reductase
           oxidoreductase protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 359

 Score =  175 bits (444), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 122/327 (37%), Positives = 184/327 (56%), Gaps = 12/327 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  ++ D+RFMS AL+ +   +  TS NP V C++VKD  ++G G     G PHAE+ AL
Sbjct: 1   MRFTAADSRFMSRALQLAARGLFTTSPNPRVGCVLVKDDRIVGEGWHERAGTPHAEIHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE ARGATAYVTLEPCSH+GR+PPCA+ +I+ G+ RVV  + DP+  V+G G+  L+
Sbjct: 61  RAAGEAARGATAYVTLEPCSHHGRTPPCAEALIDAGVSRVVAAMTDPNPLVAGGGISMLT 120

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI  +  +ME+E +     +++R   +R  + LK A + D    +A   S  ITG  +
Sbjct: 121 LAGIAAEVGLMEAEARALNPGFVSRMTRRRPWVRLKTASTLDGKTALANGASQWITGEAA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  V  LRA++ AIL G GTVLADDP +  R   +   +P+R+++D   +    + I+  
Sbjct: 181 RADVQRLRARACAILTGSGTVLADDPRMNVRDFDIG-RAPLRVVVDSTLRTPASAAIL-- 237

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIY---CDCR-DLKKLLTILVGRGVTSLLVEGG 295
               P ++   +  P    A       +I     D R DL  LL +L  RGV  + VE G
Sbjct: 238 ----PALVACRDASPATRTALEAAGAEVIEMPGVDGRVDLAALLALLAQRGVNEVHVEAG 293

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGE 322
           AA+  + + + LVD  + Y + + +G+
Sbjct: 294 AALNGALLAAGLVDEWVAYLAPLAVGD 320


>gi|145594417|ref|YP_001158714.1| riboflavin biosynthesis protein RibD [Salinispora tropica CNB-440]
 gi|145303754|gb|ABP54336.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Salinispora tropica CNB-440]
          Length = 353

 Score =  175 bits (444), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 121/329 (36%), Positives = 171/329 (51%), Gaps = 28/329 (8%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  A+  +   +G TS NP V C+++   G V+G G  AY G PHAE+ AL  AGE ARG
Sbjct: 10  MRRAVDLAARGLGTTSPNPVVGCVLLDPGGQVVGEGFHAYAGGPHAEIVALAHAGERARG 69

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-- 127
            TA VTLEPC H GR+ PC+  +++ G+ RVV+ V DP+   SG G   L   G+ VD  
Sbjct: 70  GTAVVTLEPCDHTGRTGPCSTALVQAGVARVVIAVPDPNQAASG-GAATLRAAGVRVDLG 128

Query: 128 -RMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
            R  E+E G I   A+LT       ++  K A + D     A   S+ IT   ++  VH 
Sbjct: 129 VRAAEAEAGNI---AWLTSTRRGWPYLLWKYAATLDGRSAAADGTSMWITSEAARMDVHA 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL---NGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           LR   DA+L G+GTVLADDP LT R      L    P+R+++D   +    +++   A  
Sbjct: 186 LRGTVDAVLAGVGTVLADDPRLTVRNLRDGSLAIRQPLRVVVDSAGQTPAGARVRDDA-- 243

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           AP  I T ++            +        DL  LL  L  RGV + L+EGG  +A +F
Sbjct: 244 APTWIATADE------------VGTDSAGRVDLPALLAALHQRGVRAALLEGGPRLAGAF 291

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           + + LVD I+ Y +  ++G G  P+ L +
Sbjct: 292 LAAGLVDKIVGYVAPRLLGAG--PTALAD 318


>gi|330899666|gb|EGH31085.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 301

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/247 (41%), Positives = 142/247 (57%), Gaps = 11/247 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D  +M+ AL  +R  +  T  NP V C+IV++G ++G G  A  G PHAEV AL +A
Sbjct: 6   AALDVHYMARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQA 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPCSH GR+PPCA  +IE G+  VV  + DP+  VSGRGL  L   G
Sbjct: 66  GELARGATAYVTLEPCSHQGRTPPCADALIEAGLTGVVAAMQDPNPEVSGRGLLRLMNAG 125

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++ESE +     +L R      ++ +K+A+S D    MA   S  ITG  +++ 
Sbjct: 126 IGVQCGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSA 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSL 232
           V  LRAQS  +L G  TVLAD   LT R + L             +P+R+++D   ++ L
Sbjct: 186 VQRLRAQSSVVLSGADTVLADKARLTVRADELGLDAELTALAAARAPLRVLIDGRLRVPL 245

Query: 233 DSKIIKT 239
           D+   + 
Sbjct: 246 DAPFFQA 252


>gi|241667512|ref|ZP_04755090.1| pyrimidine reductase/pyrimidine deaminase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876058|ref|ZP_05248768.1| pyrimidine reductase/pyrimidine deaminase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254842079|gb|EET20493.1| pyrimidine reductase/pyrimidine deaminase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 356

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/337 (34%), Positives = 171/337 (50%), Gaps = 31/337 (9%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + +  +M  AL  +       S NP V C+IVK+G +I  G     G  HAE+ AL++
Sbjct: 1   MKNIENYYMQQALTLANRGRLSVSPNPMVGCIIVKNGAIISEGWHEAVGEAHAEIYALKK 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG++A+GATAYVTLEPC H+GR+PPC   +I  GI++VVV   DP+  V+G+G+Q L   
Sbjct: 61  AGDKAKGATAYVTLEPCCHHGRTPPCTDALIRAGIQKVVVATLDPNPLVAGKGIQKLKDA 120

Query: 123 GI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           GI     I+ +  + + KIF H     Q  ++  +  K A+S D  I + G  S  I+  
Sbjct: 121 GIEVKVGILQKQAQEQNKIFFH----YQKTQKPFVYAKWAMSLDGKIAVNGNDSKKISSN 176

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIIL-------DPHFKL 230
            +    H LR   DAIL+G  T++ D+P L  R+   ++  P+R I+       D  +++
Sbjct: 177 EAFVDTHQLRNICDAILIGKQTLIDDNPSLDVRIQLSKKKHPVRFIISNNLSEVDKSWRV 236

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK------KLLTILVG 284
            LD    KT  +   I           +A    NI I Y      K       LL  +  
Sbjct: 237 -LDQNHAKTIFVCSKISAQ--------VANELDNIGIEYWLLPTFKGQVCLDSLLNKMGQ 287

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            G+TSLLVEGG     +FIN +L++    Y S +VI 
Sbjct: 288 TGITSLLVEGGKKTLENFINQKLINEFATYLSPVVIA 324


>gi|255325040|ref|ZP_05366146.1| riboflavin biosynthesis protein RibD [Corynebacterium
           tuberculostearicum SK141]
 gi|255297605|gb|EET76916.1| riboflavin biosynthesis protein RibD [Corynebacterium
           tuberculostearicum SK141]
          Length = 340

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 123/340 (36%), Positives = 176/340 (51%), Gaps = 33/340 (9%)

Query: 23  GLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G TS NP V  +IV   G ++G G T   G  HAEV AL EAG++ARGATA VTLEPC+H
Sbjct: 26  GTTSPNPPVGAVIVSPAGEIVGVGATQPVGGAHAEVMALREAGDKARGATAVVTLEPCAH 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME-SEGKIFLHA 140
            GR+ PCAQ +I+ G+ RV     DP  + +G G + L+  G+ V ++ +    +  L  
Sbjct: 86  TGRTGPCAQALIDAGVARVYYLHADPTPQAAG-GAEVLAGAGVDVAKLEKPPHAEDALVP 144

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +L     +R H+TLK A + D     A   S  ITG  +++ VH  RA  DAI+VG GT 
Sbjct: 145 WLFAVRTQRPHVTLKFAQTLDGFTAAADGTSQWITGEAARDWVHADRAHRDAIVVGTGTA 204

Query: 201 LADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           LAD+P LT RL+   L+ H P R+++    K  L+S     + L                
Sbjct: 205 LADNPSLTARLSDGSLRAHQPRRVVIG---KRDLESAGDAASHLR--------------- 246

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
                   + Y     +++ L  L   G   +LVEGGA +A SF+ + LVD+I  Y + +
Sbjct: 247 -------ELGYEQYDSIEEALYELYATGARDVLVEGGAGLASSFLKADLVDAISAYIAPL 299

Query: 319 VIGEGG--IPSPLEEGYLEKN-FMCVRRDYFGSDVCLEYI 355
           ++GEG   +  P+ +   E   F  V     G DV +EY+
Sbjct: 300 LLGEGRGVLAHPVTQTLAEATRFRRVGMKALGDDVLIEYV 339


>gi|320142810|gb|EFW34610.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 357

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 108/317 (34%), Positives = 161/317 (50%), Gaps = 9/317 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           ++FM  A++ +    G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A
Sbjct: 12  SQFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNA 71

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            GAT Y+TLEPCSH+G +PPC   II+C I +VV    D  +   G   + L   GI V+
Sbjct: 72  EGATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGD--ETLRAHGIEVE 129

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + +         +   + ++   IT+K++ S D         S  IT    K  V+ LR
Sbjct: 130 CVDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLR 189

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DA+L G  TV  DDP+ T R+   +  +P+++IL     +  + +I +     P+ I
Sbjct: 190 HRHDAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWI 246

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            TEN +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  
Sbjct: 247 YTENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNY 302

Query: 308 VDSIILYRSQIVIGEGG 324
           +D  ILY +  +IG  G
Sbjct: 303 IDEFILYYAPKLIGGSG 319


>gi|49484015|ref|YP_041239.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|257425881|ref|ZP_05602305.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257428548|ref|ZP_05604946.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257431182|ref|ZP_05607559.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257433863|ref|ZP_05610221.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436780|ref|ZP_05612824.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus M876]
 gi|282904343|ref|ZP_06312231.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906168|ref|ZP_06314023.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282909085|ref|ZP_06316903.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282911393|ref|ZP_06319195.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914562|ref|ZP_06322348.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus M899]
 gi|282919530|ref|ZP_06327265.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus C427]
 gi|282924908|ref|ZP_06332574.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus C101]
 gi|283958523|ref|ZP_06375974.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293503640|ref|ZP_06667487.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510656|ref|ZP_06669361.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus M809]
 gi|293537197|ref|ZP_06671877.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295428344|ref|ZP_06820973.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297590692|ref|ZP_06949330.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus MN8]
 gi|49242144|emb|CAG40844.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|257271575|gb|EEV03721.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257275389|gb|EEV06876.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257278130|gb|EEV08778.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257281956|gb|EEV12093.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284131|gb|EEV14254.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus M876]
 gi|282313274|gb|EFB43670.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317340|gb|EFB47714.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus C427]
 gi|282321743|gb|EFB52068.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325088|gb|EFB55398.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327349|gb|EFB57644.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331460|gb|EFB60974.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595961|gb|EFC00925.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790672|gb|EFC29489.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290920042|gb|EFD97110.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095306|gb|EFE25571.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466547|gb|EFF09068.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus M809]
 gi|295127744|gb|EFG57381.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297575578|gb|EFH94294.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus MN8]
 gi|312437774|gb|ADQ76845.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|315195682|gb|EFU26069.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus
           subsp. aureus CGS00]
          Length = 347

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/317 (33%), Positives = 161/317 (50%), Gaps = 9/317 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           ++FM  A++ +    G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A
Sbjct: 2   SQFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNA 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            GAT Y+TLEPCSH+G +PPC   II+C I +VV    D  +   G   + +   GI V+
Sbjct: 62  EGATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGD--ETIRDHGIEVE 119

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + +         +   + ++   IT+K++ S D         S  IT    K  V+ LR
Sbjct: 120 CVDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLR 179

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DA+L G  TV  DDP+ T R+   +  +P+++IL     +  + +I +     P+ I
Sbjct: 180 HRHDAVLTGRHTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWI 236

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            TEN +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  
Sbjct: 237 YTENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNY 292

Query: 308 VDSIILYRSQIVIGEGG 324
           +D  ILY +  +IG  G
Sbjct: 293 IDKFILYYAPKLIGGSG 309


>gi|253990958|ref|YP_003042314.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253782408|emb|CAQ85572.1| Riboflavin biosynthesis protein [Photorhabdus asymbiotica]
          Length = 362

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 119/328 (36%), Positives = 174/328 (53%), Gaps = 22/328 (6%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL  +R     TS NP+V C+IV+DG ++G G     G PHAEV AL  AG++A+G+
Sbjct: 1   MARALELARQGCFTTSPNPNVGCVIVRDGQIVGEGFHLRSGGPHAEVHALRMAGDKAKGS 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
           TAYVTLEPCSH+G++PPCA  +I  G+ RVV  + DP+ +V+GRGL  L Q GI V+  +
Sbjct: 61  TAYVTLEPCSHHGKTPPCADALIAAGVSRVVTAMQDPNPQVAGRGLYKLQQAGIEVEHGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M +E +     +L R      +I LK+A S D    +A   S  IT   S+  V  LRAQ
Sbjct: 121 MMAEAESLNRGFLKRMRTGFPYIQLKMASSLDGRTALASGESKWITSSQSRYDVQKLRAQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDSKIIK 238
             AIL    TVLADDP LT R + L   +           P+R+I+D   ++    ++I+
Sbjct: 181 CSAILSSSNTVLADDPYLTVRWSELDAETQAVYPEENLRQPVRVIVDSQNRVVQQHQVIQ 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294
                 +     + D         +N+  I         DL  L+  L  R + ++ VE 
Sbjct: 241 QPGHCWLARTKADGD------NWPENVEQILLPAHGVGVDLVLLMMQLGKRQINTVWVEC 294

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGE 322
           G  +A + +   LVD ++LY +  V+G+
Sbjct: 295 GPLLAGALLTLGLVDELVLYVAPKVLGD 322


>gi|94970364|ref|YP_592412.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Candidatus Koribacter versatilis Ellin345]
 gi|94552414|gb|ABF42338.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 399

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 129/382 (33%), Positives = 196/382 (51%), Gaps = 36/382 (9%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62
           +S D RF   AL  +   + + S NP V  ++V  DG VIG G   Y G  HAEV ALE+
Sbjct: 13  ASPDERFTLRALELASKGIAMASPNPRVGAVVVNADGEVIGEGFHMYDGLKHAEVLALEQ 72

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  ARGAT Y+ LEPCSH GR+ PCA  +I  GI+RVV  + DP+  V+GRG   L + 
Sbjct: 73  AGNAARGATLYLNLEPCSHEGRTGPCADAVIAAGIKRVVCSMPDPNPLVAGRGFAKLREA 132

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM----------IGMAGCGS 171
           G+ ++  +     +     +  R       +TLK A++ D            IG +  G 
Sbjct: 133 GVELLVGVFADYARKLNEGFSKRIRTGLPLVTLKAAMTLDGKIAPPPAEVTDIGFSQPGW 192

Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP-MRIILDPHFKL 230
             IT  I++  V  LR  +D+I++G+GTV++D+P LT R  GL    P +R++LD   +L
Sbjct: 193 --ITSEIARAHVQELRHAADSIMIGVGTVVSDNPLLTDR-TGLPRRRPLLRVVLDSQLRL 249

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI--------------IYCDCRDLK 276
            LDS+++KTA    ++  +  ++   A A  ++ I +              +     DL 
Sbjct: 250 PLDSRLVKTAHHDVLVFCSFAEEKKRA-ALEERGIQVEQVPLAKNEPGGVAVAGGRPDLN 308

Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLE 335
            ++  L  R + SL+VEGGAAV  + + + +VD + LY +  ++G G  +P  L  GY  
Sbjct: 309 AVVERLGARELNSLIVEGGAAVNWAALAAGIVDKVFLYYAPKILGGGNAVPFALGPGYAR 368

Query: 336 KNFMCVRRDY----FGSDVCLE 353
            +     R+     FG D  +E
Sbjct: 369 MDEAAYLRNLELHRFGEDFAVE 390


>gi|33240788|ref|NP_875730.1| pyrimidine reductase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238317|gb|AAQ00383.1| Pyrimidine reductase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 367

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/356 (33%), Positives = 185/356 (51%), Gaps = 10/356 (2%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +M  A+  +    G TS NP V  +I+ +   ++G G     G PHAE+ A+E+AG  A+
Sbjct: 13  WMFRAINLASLAEGQTSPNPLVGAVILDEKNRLVGEGFHLRSGEPHAEIGAIEQAGSLAK 72

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           G T  V LEPC H G++PPC   I+  GI+RVVV + DPD RVSG+G+ +L + GI +V 
Sbjct: 73  GGTLLVNLEPCCHRGKTPPCTDAILRSGIKRVVVAIQDPDQRVSGKGIAFLKESGIEVVT 132

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++E E      A++ R    R   TLK A+S D  IG++   S  I+G  S+ +VH LR
Sbjct: 133 GILEKEAAFLNRAFIFRNRTGRPWGTLKWAMSFDGRIGLSNGKSKWISGEKSRKRVHSLR 192

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           A++DA++VG GTV +D+P LT R  G+ +  P+R++      L  ++++  T L   +I 
Sbjct: 193 AKNDAVIVGGGTVRSDNPLLTTR--GIADIEPLRVVCSSTLDLPKEAQLWNTELAKTLIF 250

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
                D    L         +  +     K++  L  RG   +L E G+++A   I    
Sbjct: 251 YGPESD-ARCLENLPSGPERLCLEENTPIKVMEALAQRGCNQVLWECGSSLATKAIQQNC 309

Query: 308 VDSIILYRSQIVIGEGGIPSPLEE-GY--LEKNFMC--VRRDYFGSDVCLEYIGKN 358
           V  + L+ S  ++G     +PL + G+  +E+ F    V  +  G D  L  +  N
Sbjct: 310 VQELSLFLSPKLLGGVSAMTPLADFGFSSMEQVFKLKEVSSNKSGEDFVLNMLFDN 365


>gi|134294988|ref|YP_001118723.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Burkholderia vietnamiensis G4]
 gi|134138145|gb|ABO53888.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Burkholderia vietnamiensis G4]
          Length = 373

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/330 (35%), Positives = 174/330 (52%), Gaps = 17/330 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +   +  T+ NP V C+IVKDG VIG G T   G  HAEVQAL++A
Sbjct: 3   SDTDFAHMQRALALAARGMYTTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G +  GAT YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L 
Sbjct: 63  RARGCDVAGATVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++  E       +++R    R  + +K A S D    +    S  ITG  +
Sbjct: 123 DAGIDVRCGLLAYEAGELNIGFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238
           +   H  RA++ AIL GIGTV  D+P LT R  G+     P R+++D    L LD+++++
Sbjct: 183 RLDGHAWRARACAILTGIGTVREDNPLLTVR--GIDTPRQPQRVLVDSRLDLPLDARLLE 240

Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291
               AP++I     D    + A   + +   ++         DL  +L  L  RGV  L 
Sbjct: 241 G---APLLIFCGRLDAAGEIRANVLQSRGAEVVSLANMQGKVDLPGMLAALGARGVNELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           VE G  +  S +  + VD +++Y +  ++G
Sbjct: 298 VEAGHKLNGSLLREQCVDELLVYLAPSLLG 327


>gi|119486402|ref|ZP_01620460.1| riboflavin biosynthesis protein [Lyngbya sp. PCC 8106]
 gi|119456304|gb|EAW37435.1| riboflavin biosynthesis protein [Lyngbya sp. PCC 8106]
          Length = 368

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/356 (32%), Positives = 182/356 (51%), Gaps = 9/356 (2%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCPHAEVQALEEA 63
            FD + M   L  +R  +G T+ NP V  ++V+D   +IG G     G PHAEV AL +A
Sbjct: 12  EFDRQMMLRCLELARQALGKTAPNPLVGSVVVQDNYNIIGEGFHPGAGQPHAEVFALRDA 71

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE+A+GAT YV LEPC+HYGR+PPC + +I+  + +VVV + DP+  V+G+G++ L Q G
Sbjct: 72  GEQAKGATVYVNLEPCNHYGRTPPCTEALIKAKVAKVVVGMIDPNPLVAGQGVERLKQAG 131

Query: 124 IIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   +E E  +     ++ R +  +     K A++ D  I      S  IT   ++ Q
Sbjct: 132 IEVIVGVEQEACQQLNEGFIHRILHHQPLGIFKYAMTLDGKIATTTGHSAWITSPTARQQ 191

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LR   DA++VG  TV  D+P LT    G  E +P+R+++     L L + +      
Sbjct: 192 VHQLRVACDAVIVGGNTVRRDNPHLTTHNQG--EPNPLRVVMSRKLDLPLQANLWDITEA 249

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             ++  T++ DP      +KK + ++       K ++  L  R   S+L E G  +A   
Sbjct: 250 NTLVFTTKDADPDCQEQLQKKGVEVVVLSPLTPKTVMAHLYERQFLSVLWECGGTLAAQA 309

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEE-GYLEKN-FMCVRR---DYFGSDVCLE 353
           I    +  I+ + +  +IG     SP+ + G  + N  + ++R      GSD  +E
Sbjct: 310 IAEGAIQKILAFIAPKIIGGKTASSPVGDLGLTQMNEALTLKRVTLHSIGSDYLIE 365


>gi|319790138|ref|YP_004151771.1| riboflavin biosynthesis protein RibD [Thermovibrio ammonificans
           HB-1]
 gi|317114640|gb|ADU97130.1| riboflavin biosynthesis protein RibD [Thermovibrio ammonificans
           HB-1]
          Length = 371

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 130/377 (34%), Positives = 194/377 (51%), Gaps = 39/377 (10%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  AL  +    G T  NP+V  ++V++G V+  G     G PHAE  ALE AG++
Sbjct: 3   DCYFMELALAEAYKGKGKTLPNPAVGAVVVREGRVVATGYHEAPGRPHAEAVALERAGDK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YVTLEPC+HYGR+PPC + II  G++RVVV + DP+   SG G++ L   GI V
Sbjct: 63  AKGATLYVTLEPCNHYGRTPPCTEKIIASGVKRVVVGLRDPNPVASG-GIERLRGAGIEV 121

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +++      +  +LT     RS + LK+A + D         S  ITG  ++  VH 
Sbjct: 122 TVGVLKERCFELVEDFLTLVTCGRSFLHLKLASTLDGATADRDGRSKWITGGEARRLVHR 181

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR+  +A++VGIGTVLADDP LT R   + E  P+ +++DP  KL ++ +++K    A +
Sbjct: 182 LRSYHNAVMVGIGTVLADDPLLTVREFPV-EKQPIAVVVDPSLKLPVNCRLVKER-AAEL 239

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG----------------VTS 289
           ++VT  +  +   A   +++ +         +LL +  G G                V S
Sbjct: 240 VVVTAQESLLSYKASLLQDLGV---------RLLPVFGGEGRLDLEEALNGLKEEFSVYS 290

Query: 290 LLVEGGAAVAHSFINSRLVDSI-ILYRSQIVIGEGGIP------SPLEEGYLEKNFMCVR 342
           LL EGGA +A S +   LVD + + Y  + + G   +P        LEE +   NF    
Sbjct: 291 LLCEGGARLAGSLLVQGLVDRLSLFYAPKALGGRDFVPIFGCESRSLEEAF---NFWLFE 347

Query: 343 RDYFGSDVCLEYIGKNL 359
               GSD  L+   + L
Sbjct: 348 CGKVGSDALLKLYSREL 364


>gi|332670474|ref|YP_004453482.1| riboflavin biosynthesis protein RibD [Cellulomonas fimi ATCC 484]
 gi|332339512|gb|AEE46095.1| riboflavin biosynthesis protein RibD [Cellulomonas fimi ATCC 484]
          Length = 395

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/303 (37%), Positives = 154/303 (50%), Gaps = 33/303 (10%)

Query: 28  NPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYG 83
           NP V C L+  DG V+G G  A  G PHAEV AL +A   G    GATA VTLEPC H G
Sbjct: 43  NPRVGCVLLTPDGSVVGEGWHAGAGTPHAEVAALRDAASRGLPTDGATAVVTLEPCDHTG 102

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYL 142
           R+ PC Q ++  G+RRVVV V DP+   +G G + L   G+ +V  ++  +G+  L  +L
Sbjct: 103 RTGPCTQALLAAGVRRVVVSVPDPNPVAAG-GAERLRAAGVDVVTDVLAPDGRTLLGTWL 161

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
                 R  +TLK+A S D  +  A   S  IT  +S++  H LRA+ DAI VG GTVLA
Sbjct: 162 ASVERGRPFVTLKLATSLDGRVAAADGSSRWITSDVSRHHAHDLRAEVDAIAVGTGTVLA 221

Query: 203 DDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
           DDP LT R     L    P+R++                        V   D P  A   
Sbjct: 222 DDPSLTARNAAGELHRDQPLRVV------------------------VGHRDVPAGAR-L 256

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
                 +++    D   +L +L  R V  LLVEGG  +A +F+ +RLVD +  Y + +++
Sbjct: 257 HGPGGEVVHVRSHDPADVLRVLAEREVRHLLVEGGPTLAAAFLRARLVDEVHAYVAPVLL 316

Query: 321 GEG 323
           G G
Sbjct: 317 GAG 319


>gi|300871035|ref|YP_003785907.1| riboflavin biosynthesis protein RibD [Brachyspira pilosicoli
           95/1000]
 gi|300688735|gb|ADK31406.1| riboflavin biosynthesis protein, RibD [Brachyspira pilosicoli
           95/1000]
          Length = 365

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/334 (34%), Positives = 178/334 (53%), Gaps = 19/334 (5%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL---EEAGE 65
           ++M  A+  ++   G TS NP V  +IVKD  VIG G     G  HAE+ A    +E GE
Sbjct: 4   KYMRMAIEEAKKGEGFTSPNPLVGAVIVKDDRVIGIGYHKKYGENHAEINAFLNAKENGE 63

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +  GA+ YVTLEPCSHYG++PPCA  II+  +++V++   D + +V+G G++ L   GI 
Sbjct: 64  DVEGASIYVTLEPCSHYGKTPPCADAIIKNKLKKVIIGCVDSNPKVAGNGIKKLKDAGIE 123

Query: 126 VDRMMESE-----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           V   +  E      ++F + Y+  ++     + +K A++ D  I      S  IT   ++
Sbjct: 124 VVVNVLEEECRKLNEVFFY-YIANKI---PFVVMKYAMTMDGKIATVSGKSKWITSEKTR 179

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              H  R +  AI+VGI TV+ D+P L CRL   +  +P+RIILD   K+SLDS I KT+
Sbjct: 180 EHSHRFRNKYSAIMVGINTVIEDNPMLNCRLPNTR--NPIRIILDSSLKISLDSNICKTS 237

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTIL-VGRGVTSLLVEGG 295
                 I T + D           + II  +  +    LK+L+ IL   + + S+ VEGG
Sbjct: 238 KDIKTFIATVSGDEKKIKELEGLGVEIIKTESDNGRVSLKELMKILGEEKNIDSVYVEGG 297

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
           A++  S +  +LV+  ++Y +  + G     SP+
Sbjct: 298 ASLHASLLKEKLVNKALVYIAPKIFGGFEAKSPI 331


>gi|116493546|ref|YP_805281.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Pediococcus pentosaceus ATCC 25745]
 gi|116103696|gb|ABJ68839.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pediococcus
           pentosaceus ATCC 25745]
          Length = 353

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/350 (33%), Positives = 184/350 (52%), Gaps = 21/350 (6%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE--EA 67
           +M+ A   +      T TNP V  +IVK+ +V+ +G     G  HAE+ AL+   +  +A
Sbjct: 9   YMNLAFEMAEKGKYQTWTNPLVGAVIVKNNVVLAKGYHHQFGAAHAEIDALQHLDDLKQA 68

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           RGAT YV+LEPCSH+G++PPCA+ + E GI+ VVV   DP+  V+GRGLQ L   GI + 
Sbjct: 69  RGATMYVSLEPCSHFGKTPPCAKKLAEVGIKAVVVGQKDPNPLVAGRGLQILRDAGIEIK 128

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + ++ G    + +  +   +R ++ +K A++ D  I         ITG  +      LR
Sbjct: 129 VLNQTGGLNVKYNFFYQ--HQRPYVNVKYAMTLDGKINQQANQRSIITGKEAYQDSQQLR 186

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIIL--DPHFKLSLDSKIIKTALLAPV 245
           A+  AILVG  T+  D P+LT R   + +  P R++L  D       D    KTA   P+
Sbjct: 187 AEYQAILVGENTLKVDHPQLTVRQIAVYQQ-PWRMVLIRDVDQLKVEDYAFFKTA--DPI 243

Query: 246 IIVTENDDPVLALAFRK--KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           +++T       ++  R+   N+ +I  D     K+LT+L  RG+ S+LVEGG+ +   F+
Sbjct: 244 LLLTS------SVTRRQWPNNVEVI-SDRWTPNKILTLLAKRGIQSVLVEGGSQIHAEFL 296

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDV 350
            S LVD I +Y +  + G  G+P+   P +  Y    +  V +   G D+
Sbjct: 297 ASGLVDEINVYLAPRIYGATGLPAIFNPTQLPYQSNAYQLVEKMELGPDM 346


>gi|212223758|ref|YP_002306994.1| riboflavin biosynthesis protein RibD [Thermococcus onnurineus NA1]
 gi|212008715|gb|ACJ16097.1| riboflavin biosynthesis protein RibD [Thermococcus onnurineus NA1]
          Length = 361

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 123/337 (36%), Positives = 178/337 (52%), Gaps = 39/337 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D +FM  AL  ++   G  + NP V  +IVKDG VIG G     G  HAE+ A+E+A   
Sbjct: 5   DKKFMHLALELAKRGEGWVNPNPMVGAVIVKDGEVIGVGWHRKFGEKHAEINAIEDAKDR 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G + RGAT YVTLEPCSH+G+ PPCA  II  G +RVVV + DP   V+GRG++ + + G
Sbjct: 65  GHDTRGATLYVTLEPCSHWGKQPPCADRIIAEGFKRVVVAMKDPHSLVAGRGIEKMQRAG 124

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I VD  ++E E K     ++     K   +++K+A++ D  I      S  ITG  ++ +
Sbjct: 125 IEVDVGILEEEAKKLNEIFIKYITTKIPFVSIKLALTLDGFIATESFSSQWITGDKARQK 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP-MRIILDPH------------FK 229
           V  LR +  AI+VG GT+L D+P+L CR   L E  P  ++ILD H            F+
Sbjct: 185 VQELRRRHMAIMVGAGTILRDNPKLNCR---LPECPPKYKVILDRHGLIGEELSGGRRFR 241

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
           L  D           VII TEN +     AF + N  I+  +  D +++L  L   G+ S
Sbjct: 242 LFNDGN---------VIIFTENPE-----AFGEVNATIV--EETDPERILRKLGEMGIDS 285

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           +L+EGG  +A  F++    D   ++    + G G  P
Sbjct: 286 VLIEGG-RIACQFLS--YADKFYIFYGPKLFGRGIKP 319


>gi|269839638|ref|YP_003324330.1| riboflavin biosynthesis protein RibD [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269791368|gb|ACZ43508.1| riboflavin biosynthesis protein RibD [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 364

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 123/334 (36%), Positives = 177/334 (52%), Gaps = 19/334 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  +   +G T  NP+V  ++V+DG+VIG+G T   G PHAEV AL EAGE ARGA
Sbjct: 1   MRRALELAESALGRTWPNPAVGAVVVRDGLVIGKGATQPPGGPHAEVVALAEAGEAARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129
             YVTLEPCSH+GR+PPC + II  G+R V     DP+ +V GRG+  L + GI V   +
Sbjct: 61  ILYVTLEPCSHWGRTPPCTEAIIRAGVREVHAATLDPNPKVHGRGVAQLREAGIEVHLGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            E E       +  R       +TLK A++ D  I      S  ITG  ++   H LR +
Sbjct: 121 CEREATRINEGFFKRVRTGLPFVTLKYAMTLDGRIATRTGSSKWITGEEARTCAHRLRDR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGL-----QEHSPMRIILDPHFKLSLDSKIIK-----T 239
           +DAI+VG+GTVLADDP LT RL          H P+R+++D   +    + +++      
Sbjct: 181 ADAIMVGVGTVLADDPLLTTRLPPELCGYGGPHHPLRVVVDSRGRTPARAAMLRRDTPGR 240

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGG 295
            L+A   +  E+      LA++     +      D    L+ LL  L   GV + LVEGG
Sbjct: 241 TLVACTTLAPEDRR----LAWQDAGAEVAVFAPEDGRVPLEALLRYLGDTGVNTALVEGG 296

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
             +  + ++  L D I+ + +  +IG  G P+P+
Sbjct: 297 GTLHGALLDVGLADKIVAFVAPKLIGGEGAPAPV 330


>gi|218710376|ref|YP_002417997.1| riboflavin biosynthesis protein RibD [Vibrio splendidus LGP32]
 gi|218323395|emb|CAV19572.1| Riboflavin biosynthesis protein ribD [Vibrio splendidus LGP32]
          Length = 374

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/336 (33%), Positives = 177/336 (52%), Gaps = 27/336 (8%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62
           +  D + MS A++ ++  +  T+ NP+V C+IV+ DG ++G G  A  G  HAEV A+  
Sbjct: 5   TPLDFQMMSRAIKLAKRGIYTTAPNPNVGCVIVQTDGQIVGEGFHAKAGEAHAEVHAMRM 64

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG++A+GA AYVTLEPCSHYGR+PPCA+ +I+  + +V+  + DP+ +V+GRG++ L   
Sbjct: 65  AGDKAKGAIAYVTLEPCSHYGRTPPCAEGLIKAQVAKVICAMQDPNPKVAGRGIKMLRDA 124

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
            I V+  ++E +      A++ R       + LK+A S D    +    S  IT   ++ 
Sbjct: 125 CIEVEIGLLEQDALDLNPAFIKRMQTGMPFVQLKMAASLDGQTALENGQSQWITSPEARR 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----QEH-------SPMRIILDPHFKL 230
            V   RA+S A+L    TV+ D+  L  R   L    +EH        P+R+ILD   +L
Sbjct: 185 DVQNYRAKSGAVLSTSQTVIEDNASLNVRWTELPSSIKEHYAEDELRQPIRVILDRQNQL 244

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVT 288
             + K+ +T               VL +A    +I +   D    DL  L+  L    + 
Sbjct: 245 YPELKLFQTPT------------SVLRVAETSADIEVETTDAGQLDLHDLMRQLPANHID 292

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            + VE GA +A S I ++LVD +ILY +  ++G  G
Sbjct: 293 HIWVEAGATLAKSLIEAQLVDELILYLAPKLMGSDG 328


>gi|282917028|ref|ZP_06324786.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770846|ref|ZP_06343738.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus H19]
 gi|282319515|gb|EFB49867.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460993|gb|EFC08083.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus H19]
          Length = 347

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/317 (34%), Positives = 160/317 (50%), Gaps = 9/317 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           ++FM  A++ +    G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A
Sbjct: 2   SQFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNA 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            GAT Y+TLEPCSH+G +PPC   II+C I +VV    D  +   G   + L   GI V+
Sbjct: 62  EGATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGD--ETLRDHGIEVE 119

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + +         +   + ++   IT+K++ S D         S  IT    K  V+ LR
Sbjct: 120 CVDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLR 179

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DA+L G  TV  DDP+ T R+   +  +P+++IL     +  + +I +     P+ I
Sbjct: 180 HRHDAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWI 236

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            TEN +    L     +I IIY    DL  +L  L  RGV +LLVE G      F+ S  
Sbjct: 237 YTENPNLTTNLT----HIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNY 292

Query: 308 VDSIILYRSQIVIGEGG 324
           +D  ILY +  +IG  G
Sbjct: 293 IDEFILYYAPKLIGGSG 309


>gi|317052209|ref|YP_004113325.1| riboflavin biosynthesis protein RibD [Desulfurispirillum indicum
           S5]
 gi|316947293|gb|ADU66769.1| riboflavin biosynthesis protein RibD [Desulfurispirillum indicum
           S5]
          Length = 377

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/327 (37%), Positives = 177/327 (54%), Gaps = 13/327 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  AL  +R  +G TS NP V  +IV   G ++G G  A  G  HAEV AL++AGE+ARG
Sbjct: 11  MQMALNLARKGLGFTSPNPVVGSVIVDAAGAIVGMGYHAKAGMAHAEVVALKDAGEKARG 70

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128
           AT YVTLEPC   GR+PPC   II  GI++VV    DP+  V+GR    L   GI V+  
Sbjct: 71  ATLYVTLEPCCVQGRTPPCTDAIIRAGIQKVVYAAQDPNPAVAGRSRAILEAAGIAVESG 130

Query: 129 MMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
           ++E E + +L+ +  + + ++  +ITLK A++ D    +A   S  ITG  ++   H LR
Sbjct: 131 ILEPEAR-YLNRHFNKHITRQMPYITLKSAITLDGKTAVANGQSRWITGEEARQDGHFLR 189

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALLAP-V 245
              DAI VGIGT++ADDP LTCR  G      P  +I D   +   ++ +++ +     V
Sbjct: 190 GIHDAIAVGIGTIIADDPLLTCRHGGKTALPHPDVVIFDTFLRTPRNAAVLRPSEAERRV 249

Query: 246 IIVT-----ENDDPVLALAFRKKNINII-YCDCRDLKKLLTILVGR-GVTSLLVEGGAAV 298
           IIVT     E+D     L    + I +        L++    L  + G+TS+LVEGGA +
Sbjct: 250 IIVTSSTMMESDTATRLLGAGIQLIGLPPASQGLPLQQAFAALYEQYGITSVLVEGGAGL 309

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGI 325
             + I   L D  ++Y +  + G+ G+
Sbjct: 310 TSAIIKETLEDEHVIYMAPKLFGDEGM 336


>gi|329903444|ref|ZP_08273466.1| Diamino hydroxy phospho ribosyl amin opyrimidine deaminase
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327548371|gb|EGF33053.1| Diamino hydroxy phospho ribosyl amin opyrimidine deaminase
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 363

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/324 (34%), Positives = 172/324 (53%), Gaps = 12/324 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D + M+ AL ++   + +T+ NP V C++V+DG+V+G G T   G  HAE+QAL +A   
Sbjct: 6   DQQGMALALEWAAKGMFITAPNPRVGCVVVRDGVVLGAGHTQAAGQAHAEIQALADAQAR 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G    GAT YVTLEPCSH+GR+PPCA  II  G+ RVV  + DP+  V+G GL+ L   G
Sbjct: 66  GNSVTGATLYVTLEPCSHHGRTPPCADAIIRAGVVRVVSAIADPNPLVAGAGLERLRAAG 125

Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   +  +  + ++  + +R    +  + +K A S D    +    S  IT   +++ 
Sbjct: 126 IAVTTEVLRDAALEMNIGFFSRMQSGKPWVRMKAAASLDGKTALHNGASQWITAAPARDD 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H+ RA++ A+L GIGTV ADDP+LT R        P RI++D   ++ L ++I++    
Sbjct: 186 GHVWRARACAVLTGIGTVKADDPQLTVRAVATPRQ-PRRIVIDSRLEIDLQARILQD--- 241

Query: 243 APVIIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
           APV +V    D     A       +I         DL  L+  L  R +  L VE G  +
Sbjct: 242 APVWVVCAQADADKQAALESLGHEVICLPNAAGKVDLPGLMRELGRRQINELHVEAGFKL 301

Query: 299 AHSFINSRLVDSIILYRSQIVIGE 322
             S +    VD ++LY +  +IG+
Sbjct: 302 NGSLLREGCVDELLLYLAPSLIGD 325


>gi|62260407|gb|AAX77904.1| unknown protein [synthetic construct]
          Length = 390

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/353 (33%), Positives = 175/353 (49%), Gaps = 18/353 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           + + + D  +M  AL  +       S NP V C+IVK+G +I  G     G  HAEV AL
Sbjct: 25  LEMKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHAL 84

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +A ++A+GATAYVTLEPC H GR+PPC   II+ GI++V++   DP+ +V+G+G++ L 
Sbjct: 85  TKAVDKAKGATAYVTLEPCCHCGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLK 144

Query: 121 QKGIIV-----DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
             GI V     ++  +   KIF H     Q  K+  +  K A+S D  I +    S  I+
Sbjct: 145 NAGITVEVGLLEKQAQELNKIFFH----YQTTKKPFVYAKWAMSLDGKIAVNDGDSKKIS 200

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
              +    H LR   DAIL+G  T++ D+P L  R+N  +   P R IL  H      + 
Sbjct: 201 SHQAFVNTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHPTRFILANHLTTINHNW 260

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR----GVTSLL 291
            +     A  I V       +A    +  I          +  L  L+ +    G+TSLL
Sbjct: 261 RVLDQRHAKTIFVCSKISARVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGKIGITSLL 320

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           VEGG    +SFIN +LV+    Y + ++I +    +P ++  L  N + VR D
Sbjct: 321 VEGGNKTLNSFINQKLVNEFYTYLAPVIIADY---NPKQQ--LSFNQISVRED 368


>gi|330445267|ref|ZP_08308919.1| riboflavin biosynthesis protein RibD [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489458|dbj|GAA03416.1| riboflavin biosynthesis protein RibD [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 374

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/336 (33%), Positives = 180/336 (53%), Gaps = 24/336 (7%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           +  D R M  A++ ++     T+ NP+V C+I +   ++G G     G PHAEV AL++A
Sbjct: 3   THLDTRLMLRAIQLAKRGRFTTAPNPNVGCVIARGEEIVGEGFHYRAGEPHAEVFALKQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G  A+GATAYVTLEPCSHYGR+PPCA+ +I+ GI +V+  + DP+  V+GRG++ L + G
Sbjct: 63  GTLAKGATAYVTLEPCSHYGRTPPCAEALIKSGISKVICAMVDPNPMVAGRGVEMLQKAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++E E +     ++    +K   + LK+A S D    +A   S  ITG  ++  
Sbjct: 123 IDVQVGLLEEEAQALNLGFIKSMTKKMPFVELKLASSLDGKTALANGESKWITGPCARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231
           V   RA++ AIL    TV+ADDP L  R + L E             P+R+I+D   +L+
Sbjct: 183 VQRHRARAGAILSTSATVIADDPSLNVRWSELGEQVQAQYAQEDVRQPIRVIIDSQNRLT 242

Query: 232 LDSKIIKTALLAPVIIVTENDD------PVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285
              ++        +    E D+          +  R+ +  I      DL +L+  L   
Sbjct: 243 PAYQLFHLPGKTILARTEEGDEDWPESVSQWVVPTRQNSQQI------DLTELMRQLAEA 296

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           G+  + VE GA +A   ++++LVDS+ILY++  ++G
Sbjct: 297 GINHIWVEAGAGLAGGLLDAQLVDSLILYQAPKLMG 332


>gi|254507822|ref|ZP_05119952.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus 16]
 gi|219549195|gb|EED26190.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus 16]
          Length = 368

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 175/334 (52%), Gaps = 23/334 (6%)

Query: 1   MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP  +  D   MS A+  ++  +  T+ NP+V C+I ++G ++G G     G PHAEV A
Sbjct: 1   MPQFTETDFNMMSRAIWLAKGGIYTTAPNPNVGCVITQNGDIVGEGFHYRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           L  AG+++ GATAYVTLEPCSHYGR+PPCA+ +I+  + +V+  + DP+ +V+GRG+Q L
Sbjct: 61  LRMAGDKSVGATAYVTLEPCSHYGRTPPCAEGLIKAKVAKVICAMQDPNPQVAGRGIQML 120

Query: 120 SQKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI V+  +  +  I L+ +++ R       + LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLEQDAIALNPSFIKRMQTGLPFVQLKMAASLDGQTALANGKSQWITSEA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227
           ++  V   RAQS AIL    TV+ D+  L+ R + L E             P+R+ILD  
Sbjct: 181 ARRDVQRYRAQSGAILSTSKTVIEDNASLSVRWSDLPESVKAQYSESQLRQPVRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
            +L+ + K+ +       +IV    D  + L   ++   I   D        T+     +
Sbjct: 241 NQLTSELKLFQAG--GETLIVGPEGDVEMTLNADQQ---ISLQDT-----FATLASAHNI 290

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
             + VE GA +A S +   LVD +++Y +  ++G
Sbjct: 291 NHIWVEAGATLASSLLQQDLVDELVIYLAPKIMG 324


>gi|94677040|ref|YP_589028.1| riboflavin biosynthesis protein RibD [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
 gi|94220190|gb|ABF14349.1| riboflavin biosynthesis protein RibD [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 378

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/338 (35%), Positives = 177/338 (52%), Gaps = 22/338 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +++ A + +R     T+ NP+V C+I++D  V+G G     G PHAE+ AL  AG  
Sbjct: 4   DEFYLALAFKLARRGKLTTAPNPNVGCVIIRDHRVVGEGYHVRAGEPHAEIHALRMAGAM 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GATAY+TLEPC+HYG +PPC + +I  GI RVV  + DP+ +V+GRGL  L Q  I V
Sbjct: 64  AYGATAYITLEPCNHYGHTPPCTEALIAAGISRVVAAMLDPNPKVNGRGLYRLQQANIEV 123

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M  + ++    +L R       I +K+A S D    MA   S  IT   ++  V  
Sbjct: 124 RHSIMLQDAEMINKGFLKRMRTGLPWIRVKLATSLDGRTAMASGESSWITSNQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
            RA+SDAIL    TVLAD+P L  R   L               P+++I+D   +++   
Sbjct: 184 FRAESDAILSTSATVLADNPTLNVRWLSLPADIQCLCKEENIRQPIKVIIDSANRVNPFH 243

Query: 235 KIIK---TALLAPVIIVTENDDPVLALAFRKKNINIIYCD--CR-DLKKLLTILVGRGVT 288
           +IIK   T  LA +    + DD +      +  + ++      R DL  L+ +L  R + 
Sbjct: 244 RIIKSNGTTWLARI----QPDDKIWPRWVEQIQLPVLSRQDILRIDLMALMILLGKRHIN 299

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           S+ VE GA +A S + + LVD +ILY S  ++G+   P
Sbjct: 300 SVWVEAGANLAGSLLLAGLVDELILYMSPKLLGDKARP 337


>gi|260172134|ref|ZP_05758546.1| riboflavin biosynthesis protein ribD [Bacteroides sp. D2]
 gi|315920443|ref|ZP_07916683.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694318|gb|EFS31153.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 351

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/312 (35%), Positives = 167/312 (53%), Gaps = 19/312 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + ++M   +  ++  +     NP V  +IV +G +IG G     G  HAEV A+    +E
Sbjct: 9   EEKYMRRCIELAKNGLCNVPPNPMVGAVIVCNGRIIGEGYHIRCGEAHAEVNAIRSVKDE 68

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG- 123
           +  + +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP   V+GRG+Q L   G 
Sbjct: 69  SLLKHSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGR 128

Query: 124 -IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISK 180
            +IV  ++E E +  +  ++T     R  ITLK A S D+ I M     +P+  +  ++ 
Sbjct: 129 EVIVG-VLEEECQSLIRRFITFNTLHRPFITLKWAESADHFIDMERTSGMPVKLSSPLTS 187

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             VH  RA++DAI+VG  T L D+P LT R      H+P+R++LD    L  D +I    
Sbjct: 188 MLVHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDLQIFDEN 245

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAV 298
           +  P ++ TE   P       + NI  I  D     LK+++ +L  R + SLLVEGG+ +
Sbjct: 246 V--PTLVFTEKKQPA------RTNITYISIDFNHNTLKQIMEVLYQRKIQSLLVEGGSQL 297

Query: 299 AHSFINSRLVDS 310
             SFIN  L D 
Sbjct: 298 LQSFINDELWDE 309


>gi|254386271|ref|ZP_05001580.1| riboflavin biosynthesis protein RibD [Streptomyces sp. Mg1]
 gi|194345125|gb|EDX26091.1| riboflavin biosynthesis protein RibD [Streptomyces sp. Mg1]
          Length = 360

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 123/322 (38%), Positives = 175/322 (54%), Gaps = 17/322 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  A+  +   +G TS NP V C+I    G V+G G     G PHAEV AL  AG  ARG
Sbjct: 1   MRRAIELAARGLGSTSPNPVVGCVITDARGAVVGEGWHQRAGGPHAEVHALRAAGTAARG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128
            TAYVTLEPC+H GR+ PCAQ +IE G+ RVV  V DP+ + SG G   L   GI  +  
Sbjct: 61  GTAYVTLEPCNHTGRTGPCAQALIEAGVTRVVYAVSDPNPQASGGGAT-LRAAGIATEAG 119

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++E E +    A+LT     R H+  K A + D  I  A   S  I+   S+  VH LRA
Sbjct: 120 LLEQEAEEGNAAWLTSVRRGRPHVLWKYAATLDGRIAAADGTSRWISSPESRADVHRLRA 179

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHS--PMRIILDPHFKLSLDSKIIKTALLAPVI 246
           ++DA++VG GT+ ADDP L  R     + +  P+R++LD    +   ++++  A  AP +
Sbjct: 180 EADAVVVGSGTLRADDPHLAVRGRPGTDPADQPLRVVLDTRATVRPGARVLDDA--APTL 237

Query: 247 I-VTENDD----PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           I V E+ D    P + L     + N I      +  LL  L  RGV S+L+EGG  +A +
Sbjct: 238 IAVAEDADTGHLPGVDLVRLPADENGI-----SVHALLAELHRRGVRSVLLEGGPTLAGA 292

Query: 302 FINSRLVDSIILYRSQIVIGEG 323
           F+ +  VD ++ Y + +++G G
Sbjct: 293 FVAAGAVDKVVGYLAPVLLGAG 314


>gi|88856442|ref|ZP_01131100.1| riboflavin-specific deaminase [marine actinobacterium PHSC20C1]
 gi|88814309|gb|EAR24173.1| riboflavin-specific deaminase [marine actinobacterium PHSC20C1]
          Length = 345

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 171/340 (50%), Gaps = 41/340 (12%)

Query: 24  LTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
           +T  NP V C++V D G ++  G     G PHAEV AL + G  A G TA VTLEPC+H+
Sbjct: 26  ITGGNPQVGCVLVNDAGEIVAEGWHHGAGTPHAEVDALTKLGGNAAGLTAVVTLEPCNHH 85

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAY 141
           GR+ PC++ +I+ G+ RVV  V DP VR SG G Q L   G+ ++    +++ + FLH++
Sbjct: 86  GRTGPCSEALIDAGVSRVVYAVSDPGVR-SGGGSQRLRDAGVEVIGGASQADAEEFLHSW 144

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
           LT    +R H+T+K A + D     A   S  ITG  ++  VH  RA++DAI+VG GTVL
Sbjct: 145 LTATRLQRPHVTVKWASTLDGRAAAADGTSQWITGTAARQHVHEQRARADAIVVGTGTVL 204

Query: 202 ADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
           ADDP LT R +   L E  P  ++L                           + P  A  
Sbjct: 205 ADDPSLTARGDAGELLEWQPQPVVLG------------------------RREIPAAA-Q 239

Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS--- 316
            R     +   D  DL   L+ L   G+  + VEGG  +A +FI + L D +++Y +   
Sbjct: 240 LRHHPKQLRQFDGGDLNAALSALFEAGIRRVFVEGGPTIASAFIAAGLADELLIYLAPKL 299

Query: 317 ----QIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
               ++ +GE G+ +  E     K+         G+DV +
Sbjct: 300 LGGPKVALGELGVATMAE----AKDLSITELRPLGNDVLI 335


>gi|297569249|ref|YP_003690593.1| riboflavin biosynthesis protein RibD [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925164|gb|ADH85974.1| riboflavin biosynthesis protein RibD [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 368

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 130/341 (38%), Positives = 182/341 (53%), Gaps = 7/341 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           VS+ D  +M  AL  +R  VG TS NP V  ++VKDG V+GRG     G PHAE+ AL  
Sbjct: 2   VSATDQAYMKMALELARKGVGKTSPNPCVGAVLVKDGQVVGRGWHRRAGEPHAEINALAA 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ A GAT YVTLEPC+H GR+PPC++ I   GIRRVV  + DP+    G G     + 
Sbjct: 62  AGDLAGGATIYVTLEPCNHQGRTPPCSKAIEAAGIRRVVYGMSDPNPVAGGGGAYLAGRG 121

Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
             ++  ++  + +     +  R       + LK AVS D  I  A   S  ITG  ++ Q
Sbjct: 122 LEVLAGVLADDCRRLNLPFSKRVTTGYPWVQLKAAVSLDGRIAAATGRSKWITGEQARRQ 181

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LR  SDAILVG GTVLADDP LT RL G +   P+R+ILD        +K++     
Sbjct: 182 VHRLRCLSDAILVGSGTVLADDPSLTTRLPG-KGRDPLRVILDSKLATPPAAKVVAHDSA 240

Query: 243 APVIIVTENDDP-VLALAFRKKNINI--IYCDCRDLKKLLTIL--VGR-GVTSLLVEGGA 296
           A   I    D         R+  + +  +  +     +L+ +L  +GR GVT+LLVEGG 
Sbjct: 241 AATWIFCGPDAAESKERQLRRPGVEVHRVGLEADGTLRLVEVLEHLGRAGVTTLLVEGGG 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
            V  SF+   L D +I + + +++G  G+ +  E G  + +
Sbjct: 301 RVHGSFLRRGLADEVIFFIAPLLLGGDGMAAVSELGLADPS 341


>gi|152980375|ref|YP_001354124.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Janthinobacterium sp. Marseille]
 gi|151280452|gb|ABR88862.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Janthinobacterium sp. Marseille]
          Length = 363

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 122/356 (34%), Positives = 181/356 (50%), Gaps = 17/356 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D + +  AL  +   +  T+ NP V C+IVK+  VIG G T   G  HAEVQAL +A   
Sbjct: 6   DVQGIRLALELAAKGMFTTTPNPRVGCVIVKENKVIGSGYTQPVGHAHAEVQALNDAADR 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G +  G+T YVTLEPCSH+GR+PPCA  +I+  + RVV  + DP+  V+G+GL  L   G
Sbjct: 66  GFDVSGSTVYVTLEPCSHHGRTPPCADALIKARVARVVAAIADPNPLVAGQGLARLEAAG 125

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++E+E +     +L+R    +  + +K A S D M  +    S  ITG  ++  
Sbjct: 126 IQVSCGVLEAEAREMNIGFLSRMQHGKPWVRMKSAASLDGMTALHNGISQWITGDEARAD 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H  RA++ AIL GIGTV+ DDP+LT R        P RI++D H ++S  ++++     
Sbjct: 186 GHYWRARACAILTGIGTVMEDDPQLTVRAIDTPRQ-PQRIVIDSHLQISPHARVLSG--- 241

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298
              +IV    +P      R     II         DL  L+  L  R +  L VE G  +
Sbjct: 242 GGTLIVAAQANPEKEKPLRDLGHEIIVLPNAGGKVDLAALMQELGRRQINELHVEAGFKL 301

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDV 350
             S I    VD +++Y +  ++G+      +P PLE    +KN         G+D+
Sbjct: 302 NGSLIREGCVDELLVYLAPTLLGDAQRMFNLP-PLESLEHKKNLTFHEVKQIGADL 356


>gi|187930956|ref|YP_001890940.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187711865|gb|ACD30162.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 355

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 117/351 (33%), Positives = 174/351 (49%), Gaps = 18/351 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + D  +M  AL  +       S NP V C+IVK+G +I  G     G  HAEV AL +
Sbjct: 1   MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALTK 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A ++A+GATAYVTLEPC H GR+PPC   II+ GI++V++   DP+ +V+G+G++ L   
Sbjct: 61  AVDKAKGATAYVTLEPCCHCGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120

Query: 123 GIIV-----DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           GI V     ++  +   KIF H     Q  K+  +  K A+S D  I +    S  I+  
Sbjct: 121 GITVEVGLLEKQAQELNKIFFH----YQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSH 176

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            +    H LR   DAIL+G  T++ D+P L  R+N  +   P R IL  H      +  +
Sbjct: 177 QAFVNTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHPTRFILANHLTTINHNWQV 236

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR----GVTSLLVE 293
                A  I V       +A    +  I          +  L  L+ +    G+TSLLVE
Sbjct: 237 LDQRHAKTIFVCSKISARVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGKIGITSLLVE 296

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           GG    +SFIN +LV+    Y + ++I +    +P ++  L  N + VR D
Sbjct: 297 GGNKTLNSFINQKLVNEFYTYLAPVIIADY---NPKQQ--LSFNQISVRED 342


>gi|332534978|ref|ZP_08410796.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035596|gb|EGI72088.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 377

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 110/328 (33%), Positives = 174/328 (53%), Gaps = 12/328 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           +  D  +M+ A+  ++     T+ NP+V C++VK+  +IG G     G  HAEV AL  A
Sbjct: 8   TEHDEMYMARAIELAKKGRFTTTPNPNVGCVLVKNNQIIGEGFHQLAGQGHAEVNALAVA 67

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G+ A+GATAYVTLEPCSHYGR+PPCA+ +   G+ +V+  + D + +V+G+GL+ LS  G
Sbjct: 68  GKNAQGATAYVTLEPCSHYGRTPPCAEGLKAAGVVKVIAAMVDTNPQVAGKGLKILSDAG 127

Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++ES+ +     +  R  +   ++  K+A S D    +    S  IT   ++  
Sbjct: 128 IDVAYGLLESQARALNVGFFKRMEQGLPYVICKMAASIDGKTALKNGQSKWITSPAARQD 187

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN--------GLQEHSPMRIILDPHFKLSLDS 234
           V L RA+S AIL G  TVL DD +L  RL+         L    P+R+I+D   +L+ D 
Sbjct: 188 VQLYRAKSCAILTGADTVLVDDAKLNVRLSELPCTPPTDLPLRQPVRVIIDSQNRLTPDL 247

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVE 293
            + +  + + VII T   D  L      K+I +   + + DL+ +L  L      ++ +E
Sbjct: 248 ALFE--IQSDVIIFTTKVDKSLQWPHFVKHIEVSESNGKVDLQAVLEKLGQLQFNNVWLE 305

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG 321
            GA +A       LVD  + Y +  ++G
Sbjct: 306 AGATLAGKMTELNLVDEFVFYLAPKLMG 333


>gi|326563101|gb|EGE13374.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis
           12P80B1]
          Length = 350

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 125/361 (34%), Positives = 186/361 (51%), Gaps = 37/361 (10%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D  +M  A+  ++  +  T  NP+V C++VKD +VIG+G     G PHAE+ AL +A   
Sbjct: 10  DIYYMQLAIAEAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKAQ 69

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G + +GATAYVTLEPCSH GR+PPCA  +I   +RRVVV   DP+ +V+G G++ L   G
Sbjct: 70  GFDTKGATAYVTLEPCSHTGRTPPCADALIAANLRRVVVASLDPNPKVAGNGIKKLQNAG 129

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I ++  + + +       +L        ++ LK A S D    MA   S  ITG  ++  
Sbjct: 130 IEVLVGVCDQQAAALNLGFLKAMRMGLPYVRLKTASSLDGRTAMASGESKWITGIEARED 189

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEH---SPMRIILDPHFKLSLDSKII 237
           V  LRAQS AI+ G GT++AD+P LT R    G+  H    P  +I+D   +LS DS   
Sbjct: 190 VQRLRAQSAAIITGSGTIIADNPALTVRSKQLGVDLHMLPKPKVVIVDRRNRLS-DSDNY 248

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGA 296
           +         V   DD    L +R            DL  LL  LV +     +L+E G+
Sbjct: 249 Q---------VLNRDD---TLIWRN-----------DLMSLLKTLVSQYACYDVLIEAGS 285

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLE 353
            ++ +FI   LVD +I+Y++  ++G+   P     L++   +  F     D  G+D+ L 
Sbjct: 286 ELSGAFITEGLVDELIVYQAPCILGQDARPMFACQLDQLVQQYRFGLHSADIIGNDIRLI 345

Query: 354 Y 354
           Y
Sbjct: 346 Y 346


>gi|56708681|ref|YP_170577.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110671153|ref|YP_667710.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp.
           tularensis FSC198]
 gi|134302741|ref|YP_001122709.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|224457890|ref|ZP_03666363.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254371312|ref|ZP_04987314.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875556|ref|ZP_05248266.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56605173|emb|CAG46304.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321486|emb|CAL09687.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp.
           tularensis FSC198]
 gi|134050518|gb|ABO47589.1| Riboflavin biosynthesis protein RibD [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|151569552|gb|EDN35206.1| hypothetical protein FTBG_01094 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841555|gb|EET19991.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159932|gb|ADA79323.1| Riboflavin biosynthesis protein RibD [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 355

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 117/351 (33%), Positives = 174/351 (49%), Gaps = 18/351 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + D  +M  AL  +       S NP V C+IVK+G +I  G     G  HAEV AL +
Sbjct: 1   MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALTK 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A ++A+GATAYVTLEPC H GR+PPC   II+ GI++V++   DP+ +V+G+G++ L   
Sbjct: 61  AVDKAKGATAYVTLEPCCHCGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120

Query: 123 GIIV-----DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           GI V     ++  +   KIF H     Q  K+  +  K A+S D  I +    S  I+  
Sbjct: 121 GITVEVGLLEKQAQELNKIFFH----YQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSH 176

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            +    H LR   DAIL+G  T++ D+P L  R+N  +   P R IL  H      +  +
Sbjct: 177 QAFVNTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHPTRFILANHLTTINHNWRV 236

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR----GVTSLLVE 293
                A  I V       +A    +  I          +  L  L+ +    G+TSLLVE
Sbjct: 237 LDQRHAKTIFVCSKISARVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGKIGITSLLVE 296

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           GG    +SFIN +LV+    Y + ++I +    +P ++  L  N + VR D
Sbjct: 297 GGNKTLNSFINQKLVNEFYTYLAPVIIADY---NPKQQ--LSFNQISVRED 342


>gi|326318264|ref|YP_004235936.1| riboflavin biosynthesis protein RibD [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375100|gb|ADX47369.1| riboflavin biosynthesis protein RibD [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 377

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/329 (34%), Positives = 171/329 (51%), Gaps = 11/329 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62
           +S    FM  ALR +   +  TS NP V C++V     +IG+G T   G PHAEV AL +
Sbjct: 8   ASLPTDFMQLALRLAEEGLYRTSPNPRVGCVLVDARQQIIGQGSTQRAGGPHAEVMALRD 67

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G   +GA AYVTLEPCSH+GR+ PC   ++E GI RVV  + DP+ RV+G+G + L
Sbjct: 68  ARARGHATQGAIAYVTLEPCSHHGRTGPCCDALVEAGIARVVASLGDPNPRVAGQGFERL 127

Query: 120 SQKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              G+ V+    +E    L+  +L+R V +   + LK A S D +  +    S  IT   
Sbjct: 128 RAAGVEVEVGPGAEASRELNIGFLSRMVRRMPWVRLKSAASLDGITALPDGQSQWITSAA 187

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++  VH  RA++ A+L G+GTVLADDP L  R     E  P   +LD H +   D+ +++
Sbjct: 188 ARADVHAWRARACAVLTGVGTVLADDPRLDVR-EVPTERQPWVAVLDSHLRTPPDAALLR 246

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEG 294
            A    V+I     D     A       I++    D    L+ ++  L  R    + VE 
Sbjct: 247 -AQARDVVIYCAIRDESRERALCASGATIVHLPGPDGRVALRDVMADLAAREANEVHVEA 305

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GA  + +   + LVD ++LY +  ++G+G
Sbjct: 306 GAIASGALCAAGLVDEVLLYLAPKLLGQG 334


>gi|88809077|ref|ZP_01124586.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 7805]
 gi|88787019|gb|EAR18177.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 7805]
          Length = 372

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/304 (37%), Positives = 166/304 (54%), Gaps = 19/304 (6%)

Query: 3   VSSFDARF---MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQ 58
           V+  D R+   M  AL  +    G TS NP V  +++   G ++G G  A  G PHAEV 
Sbjct: 4   VADADQRWIPWMRRALELAALADGYTSPNPLVGAVVLDPSGTLVGEGFHARAGEPHAEVG 63

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           AL +AG+ ARG T  VTLEPC H+GR+PPC   +I+ GI RVVV + DPD RV+G GLQ 
Sbjct: 64  ALAQAGDAARGGTIIVTLEPCCHHGRTPPCTDALIKAGIARVVVALTDPDPRVAGGGLQR 123

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L   G+ ++  ++E+E     +A++ R    R    LK A+S D    +    S  I+G 
Sbjct: 124 LRDAGVEVISGVLEAEAAQQNYAFVHRVRTGRPWGLLKWAMSLDGRTALPNGASQWISGS 183

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            ++  VH LRAQ DA++VG GTV ADDP LT R  GL+   P+R++L     L   ++I 
Sbjct: 184 TARTWVHRLRAQCDAVIVGGGTVRADDPLLTSR--GLRSPEPLRVVLSRRLDLPDQAQIW 241

Query: 238 KTALLAPVIIVTENDDP------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
             + +AP ++V   D P      + AL  +++    +   C   + L+ +L  RG   +L
Sbjct: 242 DQS-VAPTLVVHGQDAPAEARDRLEALGLQRE----VLPAC-GPESLMAVLAQRGCNRVL 295

Query: 292 VEGG 295
            E G
Sbjct: 296 WECG 299


>gi|329733229|gb|EGG69566.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 347

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 107/317 (33%), Positives = 162/317 (51%), Gaps = 9/317 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           ++FM  A++ +    G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A
Sbjct: 2   SQFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNA 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            GAT Y+TLEPCSH+G +PPC   II+C I +VV    D  +   G   + L  +GI V+
Sbjct: 62  EGATIYITLEPCSHFGSTPPCVNKIIDCKITKVVYATKDNSLDTHGD--ETLRAQGIEVE 119

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + +         +   + ++   IT+K++ S D         S  IT    K  V+ LR
Sbjct: 120 CVDDERALQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLR 179

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DA+L G  TV  DDP+ T R+   +  +P+++IL     +  + +I +     P+ I
Sbjct: 180 HRHDAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWI 236

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            TEN +    L   + +I IIY    +L  +L  L  RGV +LLVE G      F+ S  
Sbjct: 237 YTENPN----LTTNQTHIEIIYLKSCELTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNY 292

Query: 308 VDSIILYRSQIVIGEGG 324
           +D  ILY +  +IG  G
Sbjct: 293 IDEFILYYAPKLIGGSG 309


>gi|222099734|ref|YP_002534302.1| Riboflavin biosynthesis protein RibD [Thermotoga neapolitana DSM
           4359]
 gi|221572124|gb|ACM22936.1| Riboflavin biosynthesis protein RibD [Thermotoga neapolitana DSM
           4359]
          Length = 348

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 123/320 (38%), Positives = 177/320 (55%), Gaps = 19/320 (5%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GE 65
           RFM  A+  ++  +G  + NP V  ++VK+G +I  G   Y G PHAE  A+E A   GE
Sbjct: 4   RFMKRAIELAKKGLGRVNPNPPVGAVVVKEGRIISEGFHPYFGGPHAERVAIESAKRKGE 63

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +  G T  VTLEPC H+G++PPC   IIE GI++VV+ + DP+  VSG G++ L + GI 
Sbjct: 64  DLTGTTLVVTLEPCDHHGKTPPCTDLIIESGIKKVVIGMRDPNP-VSGSGVEKLKKHGIE 122

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V+ ++E E K     ++T   E R  I LK A + D  I  A   S  IT  + +++ H
Sbjct: 123 VVEGVLEEEVKKLCEFFITYVTENRPFIALKYASTLDGKIADAEGNSKWITQDL-RHKAH 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS-KIIKTALLA 243
            +R    A+LVG  TVL DDP LTCRL G +  +P R+ILD    LS  S ++ +    A
Sbjct: 182 EMRNVYSAVLVGARTVLKDDPRLTCRLKGGR--NPTRVILDRRGILSGGSYRVFEDN--A 237

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            VI+ TEN +    +   K     +  DC  +  +L +L  +GV S+LVEGG+ V   F+
Sbjct: 238 RVIVFTENKEAKYPVHVEK-----VLNDC-SVGGILKVLYEKGVDSVLVEGGSEVLGEFL 291

Query: 304 NSRLVDSIILYRSQIVIGEG 323
                D +  + S  V GEG
Sbjct: 292 E--YADVVFAFYSTKVFGEG 309


>gi|15924761|ref|NP_372295.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927345|ref|NP_374878.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           N315]
 gi|148268246|ref|YP_001247189.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150394314|ref|YP_001316989.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156980087|ref|YP_001442346.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253315858|ref|ZP_04839071.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|255006556|ref|ZP_05145157.2| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257794151|ref|ZP_05643130.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9781]
 gi|258420684|ref|ZP_05683623.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9719]
 gi|258438334|ref|ZP_05689618.1| riboflavin specific deaminase [Staphylococcus aureus A9299]
 gi|258443792|ref|ZP_05692131.1| riboflavin specific deaminase [Staphylococcus aureus A8115]
 gi|258446003|ref|ZP_05694179.1| riboflavin specific deaminase [Staphylococcus aureus A6300]
 gi|258448269|ref|ZP_05696396.1| riboflavin specific deaminase [Staphylococcus aureus A6224]
 gi|258454203|ref|ZP_05702174.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A5937]
 gi|282893262|ref|ZP_06301496.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A8117]
 gi|282927897|ref|ZP_06335508.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A10102]
 gi|295406080|ref|ZP_06815888.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A8819]
 gi|296276038|ref|ZP_06858545.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297244995|ref|ZP_06928872.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A8796]
 gi|13701564|dbj|BAB42857.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247543|dbj|BAB57933.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|147741315|gb|ABQ49613.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946766|gb|ABR52702.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156722222|dbj|BAF78639.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257788123|gb|EEV26463.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9781]
 gi|257843288|gb|EEV67698.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9719]
 gi|257848378|gb|EEV72369.1| riboflavin specific deaminase [Staphylococcus aureus A9299]
 gi|257851198|gb|EEV75141.1| riboflavin specific deaminase [Staphylococcus aureus A8115]
 gi|257855245|gb|EEV78184.1| riboflavin specific deaminase [Staphylococcus aureus A6300]
 gi|257858508|gb|EEV81384.1| riboflavin specific deaminase [Staphylococcus aureus A6224]
 gi|257863655|gb|EEV86412.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A5937]
 gi|282590407|gb|EFB95486.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A10102]
 gi|282764580|gb|EFC04706.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A8117]
 gi|285817450|gb|ADC37937.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Staphylococcus aureus 04-02981]
 gi|294969077|gb|EFG45098.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A8819]
 gi|297178075|gb|EFH37323.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A8796]
 gi|315130592|gb|EFT86578.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329727599|gb|EGG64055.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 347

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 107/317 (33%), Positives = 160/317 (50%), Gaps = 9/317 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           ++FM  A++ +    G T  NP V  ++V +G ++G G     G  HAEVQAL+ A + A
Sbjct: 2   SQFMDYAIQLANMVQGQTGVNPPVGAVVVNEGRIVGIGAHLRKGDKHAEVQALDMAQQNA 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            GAT Y+TLEPCSH+G +PPC   II+C I +VV    D  +   G   + L   GI V+
Sbjct: 62  EGATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGD--ETLRAHGIEVE 119

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + +         +   + ++   IT+K++ S D         S  IT    K  V+ LR
Sbjct: 120 CVDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLR 179

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DA+L G  TV  DDP+ T R+   +  +P+++IL     +  + +I +     P+ I
Sbjct: 180 HRHDAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWI 236

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            TEN +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  
Sbjct: 237 YTENPN----LTSNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNY 292

Query: 308 VDSIILYRSQIVIGEGG 324
           +D  ILY +  +IG  G
Sbjct: 293 IDEFILYYAPKLIGGSG 309


>gi|258415855|ref|ZP_05682126.1| riboflavin specific deaminase [Staphylococcus aureus A9763]
 gi|257839448|gb|EEV63921.1| riboflavin specific deaminase [Staphylococcus aureus A9763]
          Length = 347

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 107/317 (33%), Positives = 160/317 (50%), Gaps = 9/317 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           ++FM  A++ +    G T  NP V  ++V +G ++G G     G  HAEVQAL+ A + A
Sbjct: 2   SQFMDYAIQLANMVQGQTGVNPPVGAVVVNEGRIVGIGAHLRKGDKHAEVQALDMAQQNA 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            GAT Y+TLEPCSH+G +PPC   II+C I +VV    D  +   G   + L   GI V+
Sbjct: 62  EGATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGD--EALRAHGIEVE 119

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + +         +   + ++   IT+K++ S D         S  IT    K  V+ LR
Sbjct: 120 CVDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLR 179

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DA+L G  TV  DDP+ T R+   +  +P+++IL     +  + +I +     P+ I
Sbjct: 180 HRHDAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWI 236

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            TEN +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  
Sbjct: 237 YTENPN----LTSNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNY 292

Query: 308 VDSIILYRSQIVIGEGG 324
           +D  ILY +  +IG  G
Sbjct: 293 IDEFILYYAPKLIGGSG 309


>gi|319442108|ref|ZP_07991264.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           [Corynebacterium variabile DSM 44702]
          Length = 353

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 117/315 (37%), Positives = 164/315 (52%), Gaps = 41/315 (13%)

Query: 23  GLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G TS NP V  +I+  DG V+G G T+  G PHAEV AL EAGE+ARG TA VTLEPC+H
Sbjct: 32  GTTSPNPPVGAVILSVDGDVVGTGGTSPVGGPHAEVNALAEAGEKARGGTAVVTLEPCNH 91

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-------DRMMESEG 134
            GR+ PCA  ++E GI RVV    DP     G G ++L   G+ V       D  ++   
Sbjct: 92  TGRTGPCALALLEAGIARVVYAFADPG-DAEGGGAEFLRSHGVPVTGPLVTGDTGLDGVP 150

Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
           +  +  +L  +   R H+TLK A + D         S  ITG  ++  VHL R++ DAI+
Sbjct: 151 QFSVEPWLASRRLGRPHVTLKYAGTLDGFAAATDGTSQWITGESARALVHLDRSRRDAII 210

Query: 195 VGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252
           VG GT+LADDP LT R    GL +H P R+++     + +D+ +                
Sbjct: 211 VGTGTILADDPRLTARRPEGGLYDHQPERVVVG-RTDVPVDAAVFP-------------- 255

Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
               AL +R             L ++L  L  RG+  +L+EGG  +A SFI   LVD++ 
Sbjct: 256 ----ALRYRGGA----------LAEVLADLGARGIVDVLIEGGPHIAASFIADGLVDAVD 301

Query: 313 LYRSQIVIGEGGIPS 327
            Y +  ++G  GIP+
Sbjct: 302 AYTAPALLGA-GIPT 315


>gi|119509555|ref|ZP_01628702.1| Riboflavin biosynthesis protein RibD [Nodularia spumigena CCY9414]
 gi|119465744|gb|EAW46634.1| Riboflavin biosynthesis protein RibD [Nodularia spumigena CCY9414]
          Length = 448

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 176/335 (52%), Gaps = 11/335 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S FD   M   L  +R  +G TS NP V  ++VKDG ++G G     G PHAEV AL+ A
Sbjct: 79  SDFDQAMMQRCLALARRALGRTSPNPLVGAVVVKDGEIVGEGFHPCAGEPHAEVFALKAA 138

Query: 64  G------EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           G      +E R  GAT YV LEPC+H+GR+PPC++ +I  G+ +VVV + DP+  V G G
Sbjct: 139 GVGADSTQENRACGATVYVNLEPCNHHGRTPPCSEALIAAGVAKVVVGIVDPNPLVGGGG 198

Query: 116 LQWLSQKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           +  L   G+ V   +E++    L+ A++ R V KR    LK A++ D  I      S  +
Sbjct: 199 IARLRAAGVEVVVGVEAQACYQLNEAFIHRIVHKRPLGILKYAMTLDGKIATTSGHSAWV 258

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           T   ++++VH LRA  DAI+VG  TV  D+P LT    G   H+P+R+++     L  D+
Sbjct: 259 TNQDARSEVHQLRAGCDAIIVGGNTVRKDNPYLTSHQVG--AHNPLRVVMSRQLNLPEDA 316

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           ++  TA    V+   E   P      R++ + ++       + ++T L  RG  S+L E 
Sbjct: 317 RLWDTAEAPTVVFTEEGSSPDFQSFLRQQGVEVVELTSLTPELVMTNLYDRGFCSVLWEC 376

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
           G  +A S I    V  I+ + +  +IG     +P+
Sbjct: 377 GGTLAASAIAQGAVQKILAFIAPKIIGGSHAATPV 411


>gi|320011955|gb|ADW06805.1| riboflavin biosynthesis protein RibD [Streptomyces flavogriseus
           ATCC 33331]
          Length = 366

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 120/346 (34%), Positives = 182/346 (52%), Gaps = 25/346 (7%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  A+  +   +G TS NP V C+I+   G   G G     G PHAEV AL  AGE ARG
Sbjct: 10  MRRAITLAARGLGATSPNPVVGCVILDAAGDPAGEGFHQRAGGPHAEVHALRAAGERARG 69

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
            TA VTLEPC+H GR+ PCAQ +IE G+RRVV  V DP+ + +G G   L   G+ +   
Sbjct: 70  GTAIVTLEPCNHTGRTGPCAQALIEAGVRRVVYAVSDPNPQATG-GADTLRGAGLEVAQG 128

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++  E +    A+LT     R ++  K A + D  I  A   S  IT   ++  VH LRA
Sbjct: 129 LLADEAEAGNTAWLTSVRLGRPYVLWKYAATLDGRIAAADATSRWITSPEARADVHRLRA 188

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEH-SPMRIILDP-HFKLSLDSKIIKTALLAPVI 246
           ++DA++VG GT  ADDP+L  R  G++    P+R+++D     +   ++++  +  AP +
Sbjct: 189 EADAVVVGSGTARADDPQLGVR--GIEGAVQPLRVVVDTGATAVRPGARVLDGS--APSL 244

Query: 247 IVTEND--------DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
           +   +D        + VL L        +      D+  LL  L  RGV S+L+EGG  +
Sbjct: 245 VAVADDAEAGHLPEEAVLRLPRAATGPGL------DIDALLAALHARGVRSVLLEGGPVL 298

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           A SF+ +  VD+++ Y + +++G G  P+ L +  +      +R D
Sbjct: 299 AGSFVAAGAVDTVVGYLAPVLLGAG--PAALADAGISTISQALRLD 342


>gi|145640611|ref|ZP_01796194.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae R3021]
 gi|145274537|gb|EDK14400.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
           22.4-21]
          Length = 250

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 96/246 (39%), Positives = 140/246 (56%), Gaps = 12/246 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           SS D  FM  AL  +      T+ NPSV C++VK+G ++G G     G PHAE  AL +A
Sbjct: 5   SSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ++GATAYVTLEPCSHYGR+PPCA  +IE G+ +V+  + DP+ +V+G+GL+ LS  G
Sbjct: 65  GENSKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAG 124

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I     ++  + +     +L R  +    + LK+A+S D    MA   S  ITG  +++ 
Sbjct: 125 IESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDARSD 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231
           V  +RA+S A+L    TV+ADDP L  R +   E+            P+R+ILD   ++ 
Sbjct: 185 VQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHRIQ 244

Query: 232 LDSKII 237
              K+ 
Sbjct: 245 PTHKLF 250


>gi|22299695|ref|NP_682942.1| riboflavin biosynthesis protein [Thermosynechococcus elongatus
           BP-1]
 gi|22295879|dbj|BAC09704.1| riboflavin biosynthesis protein [Thermosynechococcus elongatus
           BP-1]
          Length = 379

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 109/362 (30%), Positives = 190/362 (52%), Gaps = 13/362 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ DA++M   L  +    G T+ NP V C+IV +G VIG G     G PHAEV AL  
Sbjct: 10  IATIDAQYMGRCLELAARAKGRTAPNPLVGCVIVAEGRVIGEGFHPKAGEPHAEVFALRS 69

Query: 63  AGEEAR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
             E  R     AT YV LEPC+HYGR+PPC + I+  GI +VVV + DP+ +V+G G++ 
Sbjct: 70  VSESDRPLLSKATLYVNLEPCNHYGRTPPCTEAILAAGIPKVVVGMIDPNPQVAGAGVER 129

Query: 119 LSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L   GI V   + E++ +    A++ R   +R    LK A++ D  I      S+ ++G 
Sbjct: 130 LRSAGIEVTVGVREADCQRLNEAFVHRVRYQRPFGILKYAMTLDGKIASRAGHSLWVSGE 189

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            ++  VH LR++ DA++VG  TV  D+P LT R      H+P+R+++     L  D+ + 
Sbjct: 190 AARAMVHQLRSECDAVIVGGNTVRLDNPLLTSR----HGHNPLRVVMSRTLDLPPDASLW 245

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
            T   A +++ + +    L    + + + +++ +      ++ +L  RG+ + L E G +
Sbjct: 246 DTTAAATLVVTSASPQHPLIPQLQARGVEVVHREPLTPTAVMALLHQRGIMTALWECGGS 305

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           +A + I   +V  +  + +  +IG    P+P+ +  L K    +    +  DV  + +G+
Sbjct: 306 LAAAAIAEGMVQKVWAFIAPKIIGGFDAPTPVADLGLTK----MHEALYLEDVTWQTVGE 361

Query: 358 NL 359
           ++
Sbjct: 362 DI 363


>gi|153845346|ref|ZP_01993762.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           AQ3810]
 gi|149745121|gb|EDM56372.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           AQ3810]
          Length = 280

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 103/263 (39%), Positives = 147/263 (55%), Gaps = 13/263 (4%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P S  D   MS AL+ +R  +  T+ NP+V C+IV+DG+++G G     G PHAEV A+ 
Sbjct: 9   PFSPQDFSMMSRALKLARRGIYTTAPNPNVGCVIVRDGVIVGEGYHHRAGEPHAEVHAMR 68

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG++A GATAYVTLEPCSHYGR+PPCA+ +I+  + RVV  ++DP+ +V+GRG+Q L +
Sbjct: 69  MAGDKAEGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMEDPNPKVAGRGIQMLRE 128

Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            G+ V   ++E++       ++         I LK+A S D    ++   S  IT   ++
Sbjct: 129 AGVEVQVGLLENDAIELNRGFIKFMQTGMPFIQLKMAASLDGQSALSNGKSQWITSPQAR 188

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----QEH-------SPMRIILDPHFK 229
             V   RAQS  IL    TVL D+  L  R + L    Q H        P R+ILD   K
Sbjct: 189 QDVQCYRAQSGGILSTSKTVLDDNASLNVRWDDLPQSVQAHYELTEVRQPARVILDRQQK 248

Query: 230 LSLDSKIIKTALLAPVIIVTEND 252
           LS D K+  T     +I+ +E D
Sbjct: 249 LSDDLKLFSTE-GERIIVSSEGD 270


>gi|197123236|ref|YP_002135187.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter sp. K]
 gi|196173085|gb|ACG74058.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter sp. K]
          Length = 392

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 127/333 (38%), Positives = 182/333 (54%), Gaps = 14/333 (4%)

Query: 2   PVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           PV+  +A RFM  A+R +   +G TS NP+V  ++V+DG V+GRG  A  G PHAEV AL
Sbjct: 19  PVAGAEAERFMRLAVREAARGLGRTSPNPAVGAVVVRDGRVVGRGHHARAGGPHAEVVAL 78

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AG  ARGA  Y TLEPC H+G++PPC+  ++E G+RRV V   DP+  V+GRG+  L 
Sbjct: 79  RAAGALARGADVYTTLEPCDHFGKTPPCSVALLEAGVRRVFVGSSDPNPLVNGRGMARLR 138

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + G+ +V  ++ +E       + T   E R  +TLK AV+ D  I      +  ++G  +
Sbjct: 139 RHGVAVVKGVLRAECDRLNAPWFTFITEGRPFVTLKAAVTLDGRIATRTGDARWVSGEAA 198

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  VH LR + DA+LVG GT  ADDP LT RL       P+R++LD    L     + + 
Sbjct: 199 RAWVHRLRDRVDAVLVGAGTARADDPRLTTRLP-RGGRDPIRVVLDSDLSLPRTLALFRG 257

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVE 293
              AP ++   +  P      R+    +    CR      DL+ LL  L  RGV  LLVE
Sbjct: 258 GSPAPTLVAHASAAPA-----RRYGPGVELVRCRRGKGGVDLRDLLAKLAARGVAHLLVE 312

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           GGA V   F+ + LVD + ++ +  + G  G+P
Sbjct: 313 GGAHVHARFLEAGLVDRVAVFVAPKIAGGDGVP 345


>gi|237719659|ref|ZP_04550140.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 2_2_4]
 gi|229450928|gb|EEO56719.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 2_2_4]
          Length = 345

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 114/311 (36%), Positives = 165/311 (53%), Gaps = 17/311 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + ++M   +  ++  +   S NP V  +IV DG +IG G     G  HAEV A+    +E
Sbjct: 3   EEKYMRRCIELAKNGLCNVSPNPMVGAVIVCDGRIIGEGYHIRCGEAHAEVNAIRSVKDE 62

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +  + +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP   V+GRG+Q L   G 
Sbjct: 63  SLLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGR 122

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181
            V   ++E E K  +  ++T     R  ITLK A S D+ I +      P+  +  ++  
Sbjct: 123 EVTVGVLEEECKSLIRRFITFNTLHRPFITLKWAESADHFIDIERTDGKPVVLSSPLTSM 182

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH  RA++DAI+VG  T L D+P LT R      H+P+R++LD    L  D +I    +
Sbjct: 183 LVHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDLQIFDGNV 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVA 299
             P  I TE + P       KKNI  I  +     LK+++  L  R + SLLVEGG  + 
Sbjct: 241 --PTFIFTEKEQP------EKKNITYITINFNHNPLKQIMEALYQRKIQSLLVEGGRQLL 292

Query: 300 HSFINSRLVDS 310
            SFI++ L D 
Sbjct: 293 QSFIDNELWDE 303


>gi|329898131|ref|ZP_08272333.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [gamma
           proteobacterium IMCC3088]
 gi|328920911|gb|EGG28343.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [gamma
           proteobacterium IMCC3088]
          Length = 361

 Score =  173 bits (438), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 112/314 (35%), Positives = 163/314 (51%), Gaps = 30/314 (9%)

Query: 28  NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87
           NP V C+IVKDG ++G G T   G  HAEV AL +AGE+ARGATAYVTLEPC+H GR+ P
Sbjct: 18  NPHVGCVIVKDGQIVGEGYTQPPGQGHAEVMALAQAGEQARGATAYVTLEPCNHQGRTGP 77

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQV 146
           C+Q +I+ GI +VV  ++DP   V+G G + L   GI V   ++    K  L  +L R  
Sbjct: 78  CSQALIQAGISKVVAAIEDPYPEVAGSGFEALKHAGIEVRVGLLADTVKQQLQGFLLRLE 137

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
                + LK+A S D  I +A   S  ITG  ++  V  LRA++  ++ G+GTVL DD +
Sbjct: 138 RGYGRVRLKLACSLDGKIALANGESQWITGPSARRDVQRLRAEAGLVITGVGTVLEDDCQ 197

Query: 207 LTCRLNGL----------QEHSPMRIILDPHFKLSLDSKIIKTA---------LLAPVII 247
           L  R   L            H P+R + D   + +  +K++  A            P  I
Sbjct: 198 LNVREGDLPLDPNLAREATAHQPLRAVFDSTLRTTNGAKVLSGARTLFCAEPKTTRPDHI 257

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
             EN   V AL       N           LL ++       +L+E G  +A S++N+ L
Sbjct: 258 NPENIVEVAALKTPAGLKN----------ALLQLMAIAPANEILLECGPRLAGSWLNAGL 307

Query: 308 VDSIILYRSQIVIG 321
           +D +ILY++ +++G
Sbjct: 308 IDELILYQAPVILG 321


>gi|314924237|gb|EFS88068.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL001PA1]
 gi|314964911|gb|EFT09010.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL082PA2]
 gi|315103908|gb|EFT75884.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL050PA2]
 gi|327325608|gb|EGE67407.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL103PA1]
          Length = 331

 Score =  172 bits (437), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 107/297 (36%), Positives = 158/297 (53%), Gaps = 28/297 (9%)

Query: 28  NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87
           NP V C+IV +  VIG+G     G PHAEV+AL +AG++A+GATA VTLEPC H GR+ P
Sbjct: 25  NPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDAKGATAVVTLEPCHHTGRTGP 84

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT-RQV 146
           C+  +++ GI RVV+   DP+   SG G QWL   G+ V   + SE    L+A  T  Q+
Sbjct: 85  CSHALVDAGIARVVIAQSDPNPVASG-GEQWLRTHGVEVVTGVLSEEATALNADWTFSQI 143

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
            +R  +  K A S D         S  ITG  +++QV L RA+  AI+VG GT LAD+P 
Sbjct: 144 HRRPWVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNPR 203

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
           LT RL G+    P+R+++                            +P      R  + +
Sbjct: 204 LTVRLPGVTR-QPLRVVVG-------------------------MREPPAGCHLRDDSAS 237

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            ++    D  ++L +L  RGV  + +EGG  +A +F+ + L+D +I + +  V+G G
Sbjct: 238 TLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLIDEVIAHMAPTVLGGG 294


>gi|70728414|ref|YP_258163.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens Pf-5]
 gi|68342713|gb|AAY90319.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens Pf-5]
          Length = 368

 Score =  172 bits (437), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 117/333 (35%), Positives = 174/333 (52%), Gaps = 20/333 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D + M  AL  +      T  NP V C+I     V+G G     G PHAEV AL +A
Sbjct: 5   SEVDFQHMQHALSLAERGSHSTWPNPRVGCVIAHGSQVVGEGWHRRAGGPHAEVFALRQA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G  ARGATAYVT+EPCSH GR+  C Q +I+ G+  VVV   DP  +V+G+G+  L   G
Sbjct: 65  GGLARGATAYVTMEPCSHVGRTGACHQALIDSGVHSVVVAHQDPFEQVNGQGIAQLRNAG 124

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++ES  +     +L+    +R  + LK+ +S D    +    S  IT   ++  
Sbjct: 125 IEVRVGLLESAAQELNRGFLSTVRRQRPWVQLKMGMSLDGRTALDNGRSKWITSTRARAD 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V   RA+S AIL G GTVLADDP LT R L+  +  +P+R++LD   ++   +++     
Sbjct: 185 VQYWRARSSAILTGSGTVLADDPLLTVRQLSSPEALAPVRVVLDSQGRVPATARVFNDQ- 243

Query: 242 LAPVIIVTENDDP--------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            AP + V   + P        V+AL    + ++        L++LL  L  RG+  LLVE
Sbjct: 244 -APSLHVVHRECPLASSDSEQVMALPGDDQGLH--------LEQLLHNLSQRGLHDLLVE 294

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            G  +A + + + LVD ++LY +  ++G+   P
Sbjct: 295 AGPTLAGNLLKAHLVDELLLYVAPRLLGDLARP 327


>gi|332976011|gb|EGK12882.1| riboflavin biosynthesis protein RibD [Psychrobacter sp. 1501(2011)]
          Length = 374

 Score =  172 bits (437), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 118/362 (32%), Positives = 186/362 (51%), Gaps = 36/362 (9%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A+  ++  +  T  NP+V C++VKDG++IG G     G PHAEV AL  A + 
Sbjct: 36  DYYYMNLAIEAAKKGLYTTRPNPAVGCVLVKDGLIIGTGFHPKAGQPHAEVFALRNATQS 95

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
              ATAYVTLEPCSH G++PPCA+ +I+  + RVV+   DP+ +V+GRG++ L   GI V
Sbjct: 96  VAAATAYVTLEPCSHTGKTPPCAEALIKAQVSRVVIAGLDPNPKVAGRGVRLLLDAGIKV 155

Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              + +E    L+  +L     +  ++ LKIA S D    MA   S  ITG  ++  V  
Sbjct: 156 SVGVCTEQAEQLNLGFLKSMRTQMPYVRLKIASSLDGRTAMASGESKWITGSAAREDVQQ 215

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL-----QEHSPMRIILDPHFKLS-LDSKIIKT 239
           LRA S AI+ G  T++ D+P L  R   L     Q   P  ++LD   +L   D K++  
Sbjct: 216 LRALSGAIITGSQTIIKDNPSLNVRSTQLGVDIEQIPQPKVVVLDRRQRLKGSDYKVL-- 273

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL-TILVGRGVTSLLVEGGAAV 298
                     +N+              +++ D  DLK LL +++V   +  +L+E G+ V
Sbjct: 274 ----------QNEQ------------TLLWAD-NDLKTLLHSLVVEHDIHDVLIEAGSKV 310

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           + SFI + LVD +I+Y++  V+G    P     +     ++ F        G+D+ L ++
Sbjct: 311 SGSFIEAGLVDELIVYQAPCVLGHEAQPMLTMTVNRLSSQRRFKLAHCSQIGTDIKLNFV 370

Query: 356 GK 357
             
Sbjct: 371 AN 372


>gi|315093789|gb|EFT65765.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL060PA1]
          Length = 331

 Score =  172 bits (436), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 107/297 (36%), Positives = 158/297 (53%), Gaps = 28/297 (9%)

Query: 28  NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87
           NP V C+IV +  VIG+G     G PHAEV+AL +AG++A+GATA VTLEPC H GR+ P
Sbjct: 25  NPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDAKGATAVVTLEPCHHTGRTGP 84

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT-RQV 146
           C+  +++ GI RVV+   DP+   SG G QWL   G+ V   + SE    L+A  T  Q+
Sbjct: 85  CSHALVDAGIARVVIAQSDPNPVASG-GEQWLRTHGVEVVTGVLSEEATALNADWTFSQI 143

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
            +R  +  K A S D         S  ITG  +++QV L RA+  AI+VG GT LAD+P 
Sbjct: 144 HRRPWVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNPR 203

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
           LT RL G+    P+R+++                            +P      R  + +
Sbjct: 204 LTVRLPGVTR-QPLRVVVG-------------------------MREPPAECHLRDDSAS 237

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            ++    D  ++L +L  RGV  + +EGG  +A +F+ + L+D +I + +  V+G G
Sbjct: 238 TLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLIDEVIAHMAPTVLGGG 294


>gi|110636628|ref|YP_676835.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Cytophaga hutchinsonii ATCC 33406]
 gi|110279309|gb|ABG57495.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; 5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Cytophaga hutchinsonii ATCC 33406]
          Length = 352

 Score =  172 bits (436), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 105/332 (31%), Positives = 169/332 (50%), Gaps = 24/332 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D R+M  AL  +    G  S+NP V C++VKDG +IG G     G PHAEV A++   ++
Sbjct: 4   DERYMRRALELAMLGSGHVSSNPMVGCVVVKDGHIIGEGYHEKFGQPHAEVHAIQSVPDK 63

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +   G+T YV LEPCSHYG++PPC+  I++  I RVV    DP+  V+G G ++L   GI
Sbjct: 64  SLLEGSTLYVNLEPCSHYGKTPPCSHLIVDYKIARVVFANIDPNPLVAGAGFEYLMSNGI 123

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            ++  ++E EG+     + T    KR +I LK A + D  I      S  I+  +S+  V
Sbjct: 124 EVIQGVLEEEGRELNRRFFTYIENKRPYIILKWAETADGFIAKENFDSKWISNELSRKLV 183

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  R + D +L+G  T L D+P L  R       +P+R  +D   ++ + + ++      
Sbjct: 184 HKWRTEEDVVLIGTNTALYDNPRLNVR--DWTGRNPVRAFIDKQLQVPVGAHLL------ 235

Query: 244 PVIIVTENDDPVLALAFRKKNI-NII-YCDCRDLKKLLTILVG----RGVTSLLVEGGAA 297
                 +     +   + ++++ N++ Y     L  ++ ++      R   S+LVEGG  
Sbjct: 236 ------DGSQETICYNYHEQDVRNLVEYVKVDPLDDMIDVIAEDMYVRKHLSILVEGGTQ 289

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
           +  SF+   L D I ++RS    G  GI SP+
Sbjct: 290 LLKSFLKKGLWDEIRIFRSPNEFG-AGIESPI 320


>gi|167619029|ref|ZP_02387660.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
           Bt4]
          Length = 306

 Score =  172 bits (436), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 159/301 (52%), Gaps = 11/301 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +   +  T+ NP V C+IVKD +VIG G T   G  HAEVQAL++A
Sbjct: 3   SENDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G + R AT YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L 
Sbjct: 63  RARGNDLRDATVYVTLEPCSHFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++  E       +++R    R  + +K A S D    +A   S  ITG  +
Sbjct: 123 DAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238
           ++  H  RA++ AIL GIGTV  DDP+L  R  G+     P R+++D    + L +++++
Sbjct: 183 RDDGHKWRARACAILTGIGTVREDDPQLNVR--GVDTPRQPRRVLIDSRLDIPLTARLLE 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINII-YCDCR---DLKKLLTILVGRGVTSLLVEG 294
              L       +      A A R +   I+   + R   DL  +L  L  RG+  L VE 
Sbjct: 241 GGSLLIFCGALDAQSEARAQALRARGAEIVPLANVRGKVDLPAMLAALGERGINELHVEA 300

Query: 295 G 295
           G
Sbjct: 301 G 301


>gi|114794616|pdb|2HXV|A Chain A, Crystal Structure Of A
           Diaminohydroxyphosphoribosylaminopyrimidine Deaminase
           5-Amino-6-(5-Phosphoribosylamino)uracil Reductase
           (Tm1828) From Thermotoga Maritima At 1.80 A Resolution
          Length = 360

 Score =  172 bits (436), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 116/319 (36%), Positives = 174/319 (54%), Gaps = 19/319 (5%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
           F   A+  ++  +G  + NP V  ++VKDG +I  G   Y G PHAE  A+E A   GE+
Sbjct: 17  FXKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERXAIESARKKGED 76

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            RGAT  VTLEPC H+G++PPC   IIE GI+ VV+   DP+  VSG G++     GI +
Sbjct: 77  LRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNP-VSGNGVEKFRNHGIEV 135

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           ++ ++E E K     ++T   +KR  + LK A + D  I      S  IT  + + +VH 
Sbjct: 136 IEGVLEEEVKKLCEFFITYVTKKRPFVALKYASTLDGKIADHRGDSKWITDKL-RFKVHE 194

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT-ALLAP 244
            R    A+LVG GTVL D+P+LTCRL   +  +P+R+ILD   K  L  K+ +     A 
Sbjct: 195 XRNIYSAVLVGAGTVLKDNPQLTCRLK--EGRNPVRVILDR--KGVLSGKVFRVFEENAR 250

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           VI+ TE+++     A    ++     DC  ++ +L  L  R + S+LVEGG+ V   F++
Sbjct: 251 VIVFTESEE-----AEYPPHVEKALSDC-SVESILRNLYERDIDSVLVEGGSKVFSEFLD 304

Query: 305 SRLVDSIILYRSQIVIGEG 323
               D +  + S  + G+G
Sbjct: 305 H--ADVVFGFYSTKIFGKG 321


>gi|283779657|ref|YP_003370412.1| riboflavin biosynthesis protein RibD [Pirellula staleyi DSM 6068]
 gi|283438110|gb|ADB16552.1| riboflavin biosynthesis protein RibD [Pirellula staleyi DSM 6068]
          Length = 373

 Score =  172 bits (436), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 123/365 (33%), Positives = 191/365 (52%), Gaps = 26/365 (7%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE 62
           ++ D  FM  A+  +   +GL   NP V C+IV   G V+GRG     G PHAEV+AL++
Sbjct: 9   AASDEAFMREAIELAERGLGLVEPNPMVGCVIVSPRGEVVGRGWHGRFGGPHAEVEALQQ 68

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE+ARG+T YVTLEPCSH+G++PPCA  +I  G+ RVV  + DP  +V G G   L   
Sbjct: 69  AGEQARGSTLYVTLEPCSHFGKTPPCADAVIAAGVARVVAAMTDPFPKVQGGGFAKLRSA 128

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V+  + E+E +     YL         +  K A++ D  I      S  I+   S+ 
Sbjct: 129 GIAVESGVCEAEARALCAPYLKLVTRGMPWVIAKWAMTLDGKIATRSGYSQWISCSQSRE 188

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH +R + D I+VG  TV  DDP LT R  G  + +P RI+LD   +L   +++++TA 
Sbjct: 189 LVHGIRGRVDGIMVGRRTVELDDPLLTARPPG--KRTPARIVLDSQARLQNSTQLVRTAR 246

Query: 242 LAPVIIVT--ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG---------RGVTSL 290
            +PV++VT  E DD  +      + +++  C+                      R +T++
Sbjct: 247 QSPVLVVTGPEADDKEI------RRLSMAGCEVLPFLAATHFERLLELLSELGRRQMTNI 300

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDY 345
           LVEGGA +  S +++RLVD + ++ +  + G    P P+    +E+         ++ D 
Sbjct: 301 LVEGGAKLLGSLLDARLVDEVHVFIAPKLFGGERAPGPVAGAGVEQVASALELRNLKIDQ 360

Query: 346 FGSDV 350
            G+D+
Sbjct: 361 IGTDL 365


>gi|159898944|ref|YP_001545191.1| riboflavin biosynthesis protein RibD [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891983|gb|ABX05063.1| riboflavin biosynthesis protein RibD [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 371

 Score =  172 bits (436), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 126/349 (36%), Positives = 179/349 (51%), Gaps = 26/349 (7%)

Query: 23  GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
           G TS NP+V  ++V+ G ++GRG T   G  HAEV AL EAGE+ARGA+ YVTLEPC+ +
Sbjct: 22  GRTSPNPAVGAVVVQAGQIVGRGHTQPAGQAHAEVMALREAGEQARGASLYVTLEPCTIW 81

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
           GR+PPC   II  GI  V++   DP+ R        L   GI V    E E         
Sbjct: 82  GRTPPCTDAIIAAGIAEVIIASRDPNPRFEHDAATVLQAAGIRVGFAPEYEAAAIGQTEA 141

Query: 143 TRQ--VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
            R   V K+  +T+K A+S D  I      +  I+G  S+ +VH LR Q+DAILVGI TV
Sbjct: 142 FRHWIVTKQPFVTVKYAMSLDGKIATRTGDARWISGPASRQKVHELRDQTDAILVGINTV 201

Query: 201 LADDPELTCRLNGLQEH-----SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
           LADDP LT R   L++H      P+R++LD   ++   + ++  A+    II T      
Sbjct: 202 LADDPLLTTR---LEQHWRPVQHPVRVVLDARGRMPASAAMLADAVPGSTIIATTA---A 255

Query: 256 LALAFRK--KNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
            + A+R    N  I+           +  LL  L  RG++SL+VEGG     +F+ ++ V
Sbjct: 256 ASAAWRASLNNAEILELPSNLEGRVSIPALLNELGQRGISSLMVEGGGETIAAFLAAQAV 315

Query: 309 DSIILYRSQIVIGEGGIPSPLE----EGYLEKNFMCVR-RDYFGSDVCL 352
             + +  +  +IG G  PSP+         E     VR  +  G+D+ L
Sbjct: 316 QKVQVVIAPKIIG-GVAPSPVAGVGIARMSEAQLWQVRSSEQIGADIWL 363


>gi|269302657|gb|ACZ32757.1| riboflavin biosynthesis protein RibD [Chlamydophila pneumoniae
           LPCoLN]
          Length = 376

 Score =  172 bits (436), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 110/325 (33%), Positives = 166/325 (51%), Gaps = 10/325 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  A+            NP V C++V++  +IG G  AY G PHAE  A++ A     G
Sbjct: 11  FMRRAIEIGEKGRITAPPNPWVGCVVVQENRIIGEGFHAYAGGPHAEELAIQNASMPISG 70

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           +  YV+LEPCSH+G  PPCA  +I+  + RV V + DPD +V+G+G+  L Q GI V   
Sbjct: 71  SDVYVSLEPCSHFGSRPPCANLLIKYKVSRVFVALVDPDPKVAGQGIAMLRQAGIQVYVG 130

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + ESE +  L  YL ++        LK A S D  +  +   S  IT   +++ V  LRA
Sbjct: 131 IGESEAQASLQPYLYQRTHNFPWTILKSAASVDGQVADSQGKSQWITCPEARHDVGKLRA 190

Query: 189 QSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           +S AILVG  TVL+DDP LT R     L    P+R++LD    +   SK+      +P +
Sbjct: 191 ESQAILVGSRTVLSDDPWLTARQPQGMLYPKQPLRVVLDSRGSVPPTSKVFDKT--SPTL 248

Query: 247 IVTENDDPVLAL-AFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            VT    P   +      ++ ++  +      DL K+   L  + +  +LVEGG  +  S
Sbjct: 249 YVTTERCPKNYIKVLDSLDVPVLLTESTPSGVDLHKVYEYLAQKKILQVLVEGGTTLHTS 308

Query: 302 FINSRLVDSIILYRSQIVIGEGGIP 326
            +  R V+S++LY   +++G+   P
Sbjct: 309 LLKERFVNSLVLYSGPMILGDQKRP 333


>gi|313207146|ref|YP_004046323.1| riboflavin biosynthesis protein ribd [Riemerella anatipestifer DSM
           15868]
 gi|312446462|gb|ADQ82817.1| riboflavin biosynthesis protein RibD [Riemerella anatipestifer DSM
           15868]
 gi|315022456|gb|EFT35483.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Riemerella
           anatipestifer RA-YM]
 gi|325335416|gb|ADZ11690.1| Pyrimidine deaminase [Riemerella anatipestifer RA-GD]
          Length = 339

 Score =  172 bits (436), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 107/337 (31%), Positives = 178/337 (52%), Gaps = 23/337 (6%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA- 67
           +++S  +  +    G T  NP V  +IV +GI+IG G     G PHAE+ A+     +  
Sbjct: 5   KYISRCIALAEKARGNTYPNPLVGAVIVHNGIIIGEGYHHKAGEPHAEINAINSVENKGL 64

Query: 68  -RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            + +T YV+LEPCSH+GR+PPCA  I E G ++VV+   D + +VSG+G   + + GI +
Sbjct: 65  LKESTIYVSLEPCSHFGRTPPCATKITEIGFKKVVIGSADSNEKVSGKGKAMIEEAGIEV 124

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           VD+++E   +     + T   +KR +I LK A S D  I      + PI+  ++   VH 
Sbjct: 125 VDKVLEERCRWLNRRFFTFHEKKRPYIILKWAESNDGFIDRNFVPT-PISNTLASQYVHK 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +RA+  AILVG  T L D+P L  R   L   +P R+++D   K+     I  T   AP 
Sbjct: 184 MRAEEHAILVGTQTALNDNPTLDVR--HLDGRNPTRVLIDLELKVPQSFNIFNTN--APT 239

Query: 246 IIV----TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           II      +N D +  +   K+N          L++L+  L  + + S+++EGG+ + ++
Sbjct: 240 IIFNLHKNDNQDHLKWIKIDKENF---------LEELMYHLYEQQIQSIIIEGGSKMLNT 290

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPL--EEGYLEK 336
           FI ++L D  ++ ++  +    G  +P+  E+ Y +K
Sbjct: 291 FIEAQLWDEAVVIKAPNLTLNNGTKAPIFNEKPYRQK 327


>gi|185535483|gb|ACC77864.1| riboflavin biosynthesis protein [Staphylococcus xylosus]
          Length = 347

 Score =  172 bits (435), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 106/318 (33%), Positives = 168/318 (52%), Gaps = 11/318 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           + +++ A++ ++   G T  NP V  ++V DG ++G G     G  HAEVQAL+ A + A
Sbjct: 2   SHYLNYAIQLAKMVEGQTGLNPPVGSVVVNDGRIVGMGAHLQKGGKHAEVQALDMAQDNA 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           RG T Y++LEPC+HYG +PPC   IIE GI++VV  V D  +   G  +  L Q GI V 
Sbjct: 62  RGGTIYISLEPCTHYGSTPPCVNKIIEAGIKKVVYAVKDTTLPSEGDDI--LEQAGIEVI 119

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
              +S+ +     +   + E    +T+K++ S D         S  IT    KN V  LR
Sbjct: 120 FRSQSDAESLYRDFFMAKNESIPEVTVKVSCSLDGKQATDKGESKWITNKAVKNDVFHLR 179

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DA+L G GT+ AD+P+ T R+   +   P+++IL    ++  +  I +     P+ I
Sbjct: 180 HKHDAVLTGRGTIHADNPQYTTRIE--EGKHPIKVILSKTGEIDFNLDIFQLR-NEPIWI 236

Query: 248 VTENDDPVLALAFRKKNINII-YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
            T+N +    L    +++ II   DC  ++ +L  L  RG+ S+LVE G  V   F+ S+
Sbjct: 237 YTQNKN----LKTNIEHVEIIALTDC-SIENILKDLYQRGIGSVLVEAGPTVTSEFLESK 291

Query: 307 LVDSIILYRSQIVIGEGG 324
             + +ILY +  +IG  G
Sbjct: 292 FTNELILYYAPKIIGGSG 309


>gi|302751598|gb|ADL65775.1| bifunctional pyrimidine reductase / riboflavin biosynthesis protein
           [Staphylococcus aureus subsp. aureus str. JKD6008]
          Length = 343

 Score =  172 bits (435), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 108/314 (34%), Positives = 158/314 (50%), Gaps = 9/314 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A++ +    G T  NP V  +IVK+G ++G G     G  HAEVQAL+ A + A GA
Sbjct: 1   MDYAIQLANMVQGQTGVNPPVGAVIVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAEGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           T Y+TLEPCSH+G +PPC   II+C I +VV    D  +   G   + L   GI V+ + 
Sbjct: 61  TIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGD--ETLRAHGIEVECVD 118

Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
           +         +   + ++   IT+K++ S D         S  IT    K  V+ LR + 
Sbjct: 119 DERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRH 178

Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
           DA+L G  TV  DDP+ T R+   +  +P+++IL     +  + +I +     P+ I TE
Sbjct: 179 DAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWIYTE 235

Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
           N +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  +D 
Sbjct: 236 NPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDE 291

Query: 311 IILYRSQIVIGEGG 324
            ILY +  +IG  G
Sbjct: 292 FILYYAPKLIGGSG 305


>gi|326571732|gb|EGE21745.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis BC8]
 gi|326571813|gb|EGE21819.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis BC7]
 gi|326574353|gb|EGE24296.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis CO72]
          Length = 350

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 123/361 (34%), Positives = 186/361 (51%), Gaps = 37/361 (10%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D  +M  A+  ++  +  T  NP+V C++VKD +VIG+G     G PHAE+ AL +A   
Sbjct: 10  DIYYMQLAIAAAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKAQ 69

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G + +GATAYVTLEPCSH GR+PPCA  +I   ++RVV+   DP+ +V+G G++ L   G
Sbjct: 70  GFDTKGATAYVTLEPCSHTGRTPPCADALIAADLKRVVIASLDPNPKVAGNGIKKLQNAG 129

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I ++  + + +       +L        ++ LK A S D    MA   S  ITG  ++  
Sbjct: 130 IEVLVGVCDQQAAALNLGFLKAMRMGLPYVRLKTASSLDGRTAMASGESKWITGIEARED 189

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEH---SPMRIILDPHFKLSLDSKII 237
           V  LRAQS AI+ G GT++AD+P LT R    G+  H    P  +I+D   +LS DS   
Sbjct: 190 VQRLRAQSAAIITGSGTIIADNPALTVRSKQLGVDLHMLPKPKVVIVDRRNRLS-DSDNY 248

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGA 296
           +         V   DD    L +R            DL  LL  LV +     +L+E G+
Sbjct: 249 Q---------VLNRDD---TLIWRN-----------DLMSLLKTLVSQYACYDVLIEAGS 285

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLE 353
            ++ +FI   LVD +I+Y++  ++G+   P     L++   +  F     D  G+D+ L 
Sbjct: 286 ELSGAFITEGLVDELIVYQAPCILGQDARPMFACQLDQLVQQYRFGLHSADIIGNDIRLI 345

Query: 354 Y 354
           Y
Sbjct: 346 Y 346


>gi|121609770|ref|YP_997577.1| riboflavin biosynthesis protein RibD [Verminephrobacter eiseniae
           EF01-2]
 gi|121554410|gb|ABM58559.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Verminephrobacter eiseniae EF01-2]
          Length = 371

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/313 (36%), Positives = 163/313 (52%), Gaps = 12/313 (3%)

Query: 21  HVGL--TSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYV 74
           H GL  TS NP V C+I    G+VIGRG T   G  HAE+ AL  A   G   RGATAYV
Sbjct: 17  HQGLYRTSPNPRVGCVIADAAGVVIGRGSTGPAGGAHAEIMALRNAAAGGHSVRGATAYV 76

Query: 75  TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
           TLEPCSH+GR+ PC   ++  GI +VV  + DP+  V+G+G   L   G+ V     ++ 
Sbjct: 77  TLEPCSHHGRTGPCCDALVAAGIAKVVASLTDPNPLVAGQGFARLRAAGVAVQVGPGAQA 136

Query: 135 KIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAI 193
              L+  + +R +  R  + +K+A S D +  +A   S  ITG  ++   H  RA++ A+
Sbjct: 137 ARELNVGFFSRMLRHRPWVRMKLAASLDGVTALADGSSQWITGPAARADGHAWRARACAL 196

Query: 194 LVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD 253
           L GIGTVLADDP L  R     E  P  ++LD   ++ LD+ I        +    END 
Sbjct: 197 LTGIGTVLADDPRLDVRAL-HTERQPALVLLDSALRVPLDACIFAADRAVHLYAAAENDA 255

Query: 254 PVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
              AL  R   + ++  D +   DL  +L  L  R V  L VE G  +  + +   LVD 
Sbjct: 256 KRRALEQRGATLAVL-PDSQGRVDLAAMLHDLARRQVNELHVEAGQQLNGALLRQGLVDE 314

Query: 311 IILYRSQIVIGEG 323
           +++Y +  +IG G
Sbjct: 315 LLVYLAPKLIGPG 327


>gi|220918025|ref|YP_002493329.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955879|gb|ACL66263.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 392

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 128/333 (38%), Positives = 183/333 (54%), Gaps = 14/333 (4%)

Query: 2   PVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           PV+  +A RFM  A+R +   +G TS NP+V  ++V+DG V+GRG  A  G PHAEV AL
Sbjct: 19  PVAGAEAERFMRLAVREAARGLGRTSPNPAVGAVVVRDGRVVGRGHHARAGGPHAEVVAL 78

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AG  ARGA  Y TLEPC H+G++PPC+  ++E G+RRV V   DP+  V+GRG+  L 
Sbjct: 79  RAAGALARGADVYTTLEPCDHFGKTPPCSVALLEAGVRRVFVGSSDPNPLVNGRGMARLR 138

Query: 121 QKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + G+ V + +  +    L+A + T   E R  +TLK AV+ D  I      +  ++G  +
Sbjct: 139 RHGVAVVKGVLRDACDRLNAPWFTFITEGRPFVTLKAAVTLDGRIATRTGDARWVSGEAA 198

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  VH LR + DA+LVG GT  ADDP LT RL       P+R++LD    L     + + 
Sbjct: 199 RAWVHRLRDRVDAVLVGAGTARADDPRLTTRLP-RGGRDPIRVVLDSDLSLPRTLALFRG 257

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVE 293
              AP ++   +  P      R+    +    CR      DL+ LL  L  RGV  LLVE
Sbjct: 258 GSPAPTLVAHASAAPA-----RRYGPGVELVRCRRGKGGVDLRDLLAKLAARGVAHLLVE 312

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           GGA V   F+ + LVD + ++ +  + G  G+P
Sbjct: 313 GGAHVHARFLEAGLVDRVAVFVAPKIAGGDGVP 345


>gi|218506245|ref|ZP_03504123.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
           [Rhizobium etli Brasil 5]
          Length = 137

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 83/136 (61%), Positives = 105/136 (77%), Gaps = 1/136 (0%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M V+  D  FM+AA+R SR H+G T+TNPSV CLIV+DG+++G+ VTA GG PHAE QAL
Sbjct: 1   MSVTPDDEGFMAAAIRLSRRHLGRTATNPSVGCLIVRDGVIVGQAVTAIGGRPHAEPQAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAG+ ARGATAYVTLEPCSH+G++PPCA+ +I  G+ RVV+ V DPD RVSGRG+  L 
Sbjct: 61  AEAGQLARGATAYVTLEPCSHHGKTPPCAEALIAYGVARVVISVTDPDPRVSGRGITMLR 120

Query: 121 QKGIIVDR-MMESEGK 135
             GI VD   +E+EG+
Sbjct: 121 DAGIEVDTGALEAEGR 136


>gi|323439574|gb|EGA97294.1| riboflavin specific deaminase [Staphylococcus aureus O11]
 gi|323442021|gb|EGA99657.1| riboflavin specific deaminase [Staphylococcus aureus O46]
          Length = 343

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/314 (34%), Positives = 158/314 (50%), Gaps = 9/314 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A++ +    G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A GA
Sbjct: 1   MDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAEGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           T Y+TLEPCSH+G +PPC   II+C I +VV    D  +   G   + L   GI V+ + 
Sbjct: 61  TIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGD--ETLRDHGIEVECVD 118

Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
           +         +   + ++   IT+K++ S D         S  IT    K  V+ LR + 
Sbjct: 119 DERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRH 178

Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
           DA+L G  TV  DDP+ T R+   +  +P+++IL     +  + +I +     P+ I TE
Sbjct: 179 DAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWIYTE 235

Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
           N +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  +D 
Sbjct: 236 NPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDE 291

Query: 311 IILYRSQIVIGEGG 324
            ILY +  +IG  G
Sbjct: 292 FILYYAPKLIGGSG 305


>gi|317402603|gb|EFV83165.1| riboflavin biosynthesis protein ribd [Achromobacter xylosoxidans
           C54]
          Length = 386

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/330 (34%), Positives = 175/330 (53%), Gaps = 13/330 (3%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P  S D  +M  AL  ++  +  T+ NP V C+IV+DG V+G G T   G PHAEV AL 
Sbjct: 5   PSESDDLSWMRRALALAQTVMYSTAPNPRVGCVIVRDGRVLGEGATQPPGGPHAEVCALR 64

Query: 62  EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           +A   GE   GAT YVTLEPCSH+GR+PPC   ++     RVVV + DP+  V+G+GL  
Sbjct: 65  DAQARGESVAGATVYVTLEPCSHFGRTPPCVDALLAAAPARVVVAIGDPNPLVNGKGLAR 124

Query: 119 LSQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L Q GI V   +  E  + L+A +++R         LK+A S D    +    S  ITG 
Sbjct: 125 LRQAGIAVTTGICREEALALNAGFISRMSRGLPWTWLKMATSLDGRSALHNGLSQWITGP 184

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            ++   HL RA+S  +L GIGTVL DDP+LT R +      P R ++D  F++  D+++ 
Sbjct: 185 EARADGHLWRARSCVVLTGIGTVLKDDPQLTVR-SVQTPRQPRRAVVDGRFEIPEDARLF 243

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLV 292
                  VI+ T   D         +N+ ++       D  DL  ++  L  +    + V
Sbjct: 244 DG---GEVIVFTARVDAAKQARLEARNVRVVSMPAAEPDRVDLPAMMRWLAAQQFNEVHV 300

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
           E GA ++ + + +  VD +++Y + +++G+
Sbjct: 301 EAGAGLSGALVAAGCVDELLIYMAPMLLGD 330


>gi|312830146|emb|CBX34988.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus ECT-R 2]
          Length = 347

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/317 (33%), Positives = 159/317 (50%), Gaps = 9/317 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           ++FM  A++ +    G T  NP V  ++V +G ++G G     G  HAEVQAL+   + A
Sbjct: 2   SQFMDYAIQLANMVQGQTGVNPPVGAVVVNEGRIVGIGAHLRKGDKHAEVQALDMVQQNA 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            GAT Y+TLEPCSH+G +PPC   II+C I +VV    D  +   G   + L   GI V+
Sbjct: 62  EGATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGD--ETLRAHGIEVE 119

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + +         +   + ++   IT+K++ S D         S  IT    K  V+ LR
Sbjct: 120 CVDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLR 179

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DA+L G  TV  DDP+ T R+   +  +P+++IL     +  + +I +     P+ I
Sbjct: 180 HRHDAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWI 236

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            TEN +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  
Sbjct: 237 YTENPN----LTSNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNY 292

Query: 308 VDSIILYRSQIVIGEGG 324
           +D  ILY +  +IG  G
Sbjct: 293 IDEFILYYAPKLIGGSG 309


>gi|328951151|ref|YP_004368486.1| riboflavin biosynthesis protein RibD [Marinithermus hydrothermalis
           DSM 14884]
 gi|328451475|gb|AEB12376.1| riboflavin biosynthesis protein RibD [Marinithermus hydrothermalis
           DSM 14884]
          Length = 390

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/376 (31%), Positives = 184/376 (48%), Gaps = 29/376 (7%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S  D R+M  AL+ +    G T  NP V  ++VKDG ++G G     G PHAEV AL +
Sbjct: 1   MSHLDERYMRRALQLAERARGHTHPNPLVGAVVVKDGRIVGEGYHPRAGLPHAEVFALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGAT YVTLEPC+H+GR+PPC   ++E G+ RVVV   DP+ +  G GL+ L+Q 
Sbjct: 61  AGEAARGATVYVTLEPCNHHGRTPPCTTALLEAGVARVVVAARDPNPKAQG-GLERLAQA 119

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ V   ++E+E +     +     + R  +  K A + D  +      +  +TG  S+ 
Sbjct: 120 GVAVQWGVLEAEARAQNEVFFHGLEQNRPFVLWKAATTLDGRVATRTGHAQWVTGPQSRR 179

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----------PMRIILDPHFKLS 231
             H  R    AI VG+GTVLADDP LT R    + +           P++++ D   +  
Sbjct: 180 IAHAYRQSLAAIAVGVGTVLADDPALTVRDPEFRPYPWMLEPPPLRDPLKVVFDTQARTP 239

Query: 232 LDSKIIKTALL---APVIIVTENDDPV-LALAFRKKNINIIYCDCRD----LKKLLTILV 283
             +++         A V++      P+    A       ++     +    L+  L  L 
Sbjct: 240 PQARLFAPGPRGEPARVVVFVGAAAPLERTRALEAAGARVVPLPDEEGRPSLRAALEWLW 299

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF----- 338
             G+  LL+EGG  +A +F+ + LVD + L+ +  ++GEG    PL  G           
Sbjct: 300 NEGIDGLLLEGGPTLAGAFVRAGLVDKLALFLAPKLVGEG---RPLLAGLGAARMDEALG 356

Query: 339 -MCVRRDYFGSDVCLE 353
               RR++ G ++ LE
Sbjct: 357 VTLTRREWVGEELWLE 372


>gi|319794177|ref|YP_004155817.1| riboflavin biosynthesis protein ribd [Variovorax paradoxus EPS]
 gi|315596640|gb|ADU37706.1| riboflavin biosynthesis protein RibD [Variovorax paradoxus EPS]
          Length = 375

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/332 (35%), Positives = 168/332 (50%), Gaps = 12/332 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59
           MP    DA+ ++ ALR +   + LT  NP V C++   +G V+G+G T   G PHAEV A
Sbjct: 1   MPSHEQDAQHIATALRLASDALLLTDPNPRVGCVLCDAEGRVLGQGHTQKAGGPHAEVMA 60

Query: 60  LEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           L +A   G    GATAYVTLEPCSH+GR+ PC   +I  GI RVV  + DP+  V+G+G 
Sbjct: 61  LRDAAAQGHSVEGATAYVTLEPCSHHGRTGPCCDALIAAGIERVVASLADPNPLVAGQGF 120

Query: 117 QWLSQKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
           + L   G+ V+    ++    L+  + +R V K   + LK+A S D   G+    S  IT
Sbjct: 121 ERLRAAGVEVEVGPGADESRELNIGFFSRMVRKTPWVRLKVAASLDGKTGLENGMSQWIT 180

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
              ++   H  RA++ A+L G+GTVL D+P L  RL       P  +++D   +   D+ 
Sbjct: 181 SEPARADGHAWRARASAVLTGVGTVLEDNPRLDVRLVPTPRQ-PHLVVVDSRLQTPPDAH 239

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINII---YCDCR-DLKKLLTILVGRGVTSLL 291
           I       PV I     D   A A   +   +      D + DL  +L  L  RGV  L 
Sbjct: 240 IFIAGR--PVWIYAAVRDEAKAAALEARGATVTCLANADGKVDLGAMLKDLAARGVNELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           VE G  +  S I    VD +++Y +  +IG G
Sbjct: 298 VESGHKLNGSLIREGCVDELLVYLAPKLIGRG 329


>gi|15618780|ref|NP_225066.1| riboflavin deaminase [Chlamydophila pneumoniae CWL029]
 gi|15836404|ref|NP_300928.1| riboflavin deaminase [Chlamydophila pneumoniae J138]
 gi|16752168|ref|NP_445535.1| riboflavin-specific deaminase [Chlamydophila pneumoniae AR39]
 gi|33242231|ref|NP_877172.1| riboflavin-specific deaminase [Chlamydophila pneumoniae TW-183]
 gi|6225949|sp|Q9Z735|RIBD_CHLPN RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
           RecName:
           Full=Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase; Includes: RecName:
           Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|4377188|gb|AAD19009.1| Riboflavin Deaminase [Chlamydophila pneumoniae CWL029]
 gi|7189911|gb|AAF38776.1| riboflavin-specific deaminase [Chlamydophila pneumoniae AR39]
 gi|8979245|dbj|BAA99079.1| riboflavin deaminase [Chlamydophila pneumoniae J138]
 gi|33236742|gb|AAP98829.1| riboflavin-specific deaminase [Chlamydophila pneumoniae TW-183]
          Length = 376

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/333 (34%), Positives = 166/333 (49%), Gaps = 26/333 (7%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  A+            NP V C++V++  +IG G  AY G PHAE  A++ A     G
Sbjct: 11  FMRRAIEIGEKGRITAPPNPWVGCVVVQENRIIGEGFHAYAGGPHAEELAIQNASMPISG 70

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           +  YV+LEPCSH+G  PPCA  +I+  + RV V + DPD +V+G+G+  L Q GI V   
Sbjct: 71  SDVYVSLEPCSHFGSCPPCANLLIKHKVSRVFVALVDPDPKVAGQGIAMLRQAGIQVYVG 130

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + ESE +  L  YL ++        LK A S D  +  +   S  IT   +++ V  LRA
Sbjct: 131 IGESEAQASLQPYLYQRTHNFPWTILKSAASVDGQVADSQGKSQWITCPEARHDVGKLRA 190

Query: 189 QSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           +S AILVG  TVL+DDP LT R     L    P+R++LD    +   SK+      +P +
Sbjct: 191 ESQAILVGSRTVLSDDPWLTARQPQGMLYPKQPLRVVLDSRGSVPPTSKVFDKT--SPTL 248

Query: 247 IVT-----EN--------DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            VT     EN        D PVL        +        DL K+   L  + +  +LVE
Sbjct: 249 YVTTERCPENYIKVLDSLDVPVLLTESTPSGV--------DLHKVYEYLAQKKILQVLVE 300

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           GG  +  S +  R V+S++LY   +++G+   P
Sbjct: 301 GGTTLHTSLLKERFVNSLVLYSGPMILGDQKRP 333


>gi|300312948|ref|YP_003777040.1| bifunctional diaminohydroxyphosphoribosyl aminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Herbaspirillum seropedicae SmR1]
 gi|300075733|gb|ADJ65132.1| bifunctional enzyme: diaminohydroxyphosphoribosyl aminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase protein [Herbaspirillum seropedicae SmR1]
          Length = 354

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/307 (35%), Positives = 162/307 (52%), Gaps = 12/307 (3%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSH 81
           T+ NP V C+IVKD  +IG G T   G  HAE+QA+ +A   G + RGAT YVTLEPCSH
Sbjct: 15  TTPNPRVGCVIVKDQRIIGAGFTQPPGGNHAEIQAMADAAARGHDVRGATVYVTLEPCSH 74

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHA 140
           +GR+PPCA  +I  G+ RVV  + DP+  V+G+GL  L   GI V   ++E E +     
Sbjct: 75  FGRTPPCADALIRAGVARVVAAIADPNPMVAGQGLARLQAAGIEVSCGLLEEEARDINIG 134

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +L R    R  + +K A S D    +    S  ITG  +++  H+ RA++ AI+ GIGT+
Sbjct: 135 FLHRMRTGRPWVRMKSAASLDGKTALHNGVSQWITGQAARDDGHIWRARACAIMAGIGTI 194

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
             DD +LT R        P RI++D    +S ++++I+        + T  DD     A 
Sbjct: 195 QKDDAQLTVRAIETPRQ-PRRIVIDSKLIVSPEARVIQG---GNTWVFTATDDRDKRAAL 250

Query: 261 RKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
             +   +I         DL  L+  L  R +  L VE GA +  + +    VD +++Y +
Sbjct: 251 EAEGAEVILLANEQGKVDLPGLMRELGQRQINELHVEAGARLNGALLREGCVDELLVYLA 310

Query: 317 QIVIGEG 323
             +IG+G
Sbjct: 311 PSLIGDG 317


>gi|257055601|ref|YP_003133433.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Saccharomonospora viridis DSM 43017]
 gi|256585473|gb|ACU96606.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Saccharomonospora viridis DSM 43017]
          Length = 349

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/322 (36%), Positives = 157/322 (48%), Gaps = 39/322 (12%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  AL  S    G TS NP V  +I+  +G  +G G T     PHAEV AL EAGE ARG
Sbjct: 15  MEVALALSAGVRGNTSPNPPVGAVILDAEGRRVGTGATQPPPGPHAEVVALREAGERARG 74

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128
            TA VTLEPCSH+GR+PPC Q +++ G+  V   V DP    SG G + L   G+ V   
Sbjct: 75  GTAVVTLEPCSHHGRTPPCTQALLDAGVAAVRYAVADPHPAASG-GAERLRAAGVDVAGG 133

Query: 129 -MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + E      L A+L R+   R H+T K A S D  +  A   S  I+G  S+ +VH LR
Sbjct: 134 VLAEEVASGPLRAWLHRERTGRPHVTWKYAASLDGRVAAADGTSRWISGPTSRAEVHALR 193

Query: 188 AQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILD----PHFKLSLDSKIIKTAL 241
           A  DAI+VG GTVL DDP LT R     L    P+R+++     P     LDS       
Sbjct: 194 AAVDAIVVGTGTVLTDDPWLTVRTPDGELAPRQPLRVVVGTRGIPEGARVLDS------- 246

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
                                     +     D  ++L +L  RGV  +L+EGG  +A +
Sbjct: 247 ----------------------TAETVRIASHDPDEVLALLSERGVVDVLLEGGPTLAGA 284

Query: 302 FINSRLVDSIILYRSQIVIGEG 323
           F+ +  VD II Y +  ++G G
Sbjct: 285 FVAAGRVDRIIAYVAPTLLGAG 306


>gi|320139809|gb|EFW31673.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus MRSA131]
          Length = 343

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/314 (34%), Positives = 158/314 (50%), Gaps = 9/314 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A++ +    G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A GA
Sbjct: 1   MDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAEGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           T Y+TLEPCSH+G +PPC   II+C I +VV    D  +   G   + L   GI V+ + 
Sbjct: 61  TIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGD--ETLRAHGIEVECVD 118

Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
           +         +   + ++   IT+K++ S D         S  IT    K  V+ LR + 
Sbjct: 119 DERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRH 178

Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
           DA+L G  TV  DDP+ T R+   +  +P+++IL     +  + +I +     P+ I TE
Sbjct: 179 DAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWIYTE 235

Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
           N +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  +D 
Sbjct: 236 NPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDE 291

Query: 311 IILYRSQIVIGEGG 324
            ILY +  +IG  G
Sbjct: 292 FILYYAPKLIGGSG 305


>gi|160885546|ref|ZP_02066549.1| hypothetical protein BACOVA_03546 [Bacteroides ovatus ATCC 8483]
 gi|156109168|gb|EDO10913.1| hypothetical protein BACOVA_03546 [Bacteroides ovatus ATCC 8483]
          Length = 351

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/311 (35%), Positives = 166/311 (53%), Gaps = 17/311 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + ++M   +  ++  +     NP+V  +IV +G +IG G     G  HAEV A+    +E
Sbjct: 9   EEKYMRRCIELAKNGLCNVPPNPTVGAVIVCNGRIIGEGYHIRCGEAHAEVNAIRSVKDE 68

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +  + +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP   V+GRG+Q L   G 
Sbjct: 69  SLLKHSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGR 128

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP--ITGFISKN 181
            V   ++E E +  +  ++T     R +ITLK A S D  I +     +P  ++  ++  
Sbjct: 129 EVTVGILEEECQSLIRRFITFNTLHRPYITLKWAESADRFIDIERTSGMPLILSSPLTSM 188

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH  RA++DAI+VG  T L D+P LT R      H+P+R++LD    L  D +I    +
Sbjct: 189 LVHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDLQIFDGNV 246

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVA 299
             P ++ TE   P       + NI  I  D     L++++ +L  R + SLLVEGG+ + 
Sbjct: 247 --PTLVFTEKKQPA------RTNITYISIDFNHNPLEQIMEVLYQRKIQSLLVEGGSQLL 298

Query: 300 HSFINSRLVDS 310
            SFIN  L D 
Sbjct: 299 QSFINDELWDE 309


>gi|118602777|ref|YP_903992.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567716|gb|ABL02521.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 349

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/323 (32%), Positives = 171/323 (52%), Gaps = 17/323 (5%)

Query: 4   SSFDARFMSAALRF-SRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           S  D + M  AL+  S+   G+ S NP V C+IVK   +I +G     G  H E+ AL++
Sbjct: 6   SKNDTQNMVIALKLASQGKYGVKS-NPMVGCVIVKHTKIIAKGYHQTFGKAHGEINALQQ 64

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
              +A+GAT YVTLEPCSH G++P CAQ II  G+++V++ + DP+  V+G+G+  L   
Sbjct: 65  INHQAQGATFYVTLEPCSHQGKTPSCAQAIIHSGVKKVIIAMLDPNPLVNGKGVVMLENA 124

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V   ++E++       ++      +  +  KIA+S D    M+   S  IT  +++ 
Sbjct: 125 GIEVKIGLLENDALTLNQGFIKYMKTNKPFVRCKIAMSLDGKTSMSSGESKWITSEVTRL 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V  LRA   AI+ G GT++ D+P +T RL+ +   +P+R+++D   +++  S  I  A 
Sbjct: 185 DVQKLRANHQAIMTGSGTIINDNPLMTVRLDNI-NLTPLRVVIDSKNQITNTSLNIFNA- 242

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
                     D P L L     N   +     DL  +LT L  +G+ ++L+E G  +  S
Sbjct: 243 ----------DAPTLIL--NPTNTKTLSSGKLDLGNVLTQLGNQGINNVLLEAGPKLIGS 290

Query: 302 FINSRLVDSIILYRSQIVIGEGG 324
            I S L+D  I+Y + I++G   
Sbjct: 291 MIKSNLIDEFIIYMAPILMGSNA 313


>gi|302343809|ref|YP_003808338.1| riboflavin biosynthesis protein RibD [Desulfarculus baarsii DSM
           2075]
 gi|301640422|gb|ADK85744.1| riboflavin biosynthesis protein RibD [Desulfarculus baarsii DSM
           2075]
          Length = 377

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/334 (37%), Positives = 186/334 (55%), Gaps = 10/334 (2%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  FM+ AL  +R  +G +S NP+V  L+V +G ++GRG     G PHAE  AL +AG 
Sbjct: 9   LDRHFMARALALTRRGLGRSSPNPAVGALVVAEGRIVGRGWHVKKGQPHAEPLALAQAGA 68

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            ARGAT YVTLEPC+H G +PPC Q I+  G+ RVV    DP+  V+G G  +L+ +G+ 
Sbjct: 69  AARGATLYVTLEPCNHQGATPPCTQAILRAGVARVVYGAGDPNPTVAGGGGAFLAGRGLA 128

Query: 126 VDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V+  + +E   F H  +LT   + R H+ LK A + D     A   S  ITG  S+  VH
Sbjct: 129 VEAGVLAEQCAFEHRFFLTHITKGRPHVILKTAATLDGKTATASGDSRWITGPASRRFVH 188

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA---- 240
            LR   D + VG+GT L DDP+LTCRL G ++  P+R+I+D   ++   +K+   A    
Sbjct: 189 RLRGWCDCVCVGVGTALVDDPQLTCRLPGGRD--PLRVIVDSRLRIDHRAKVFDPAAGGG 246

Query: 241 -LLAPVIIVTEND-DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
            L+A   +    D + + A+      ++       DL +LL  L  RGV  +L+EGGA +
Sbjct: 247 CLVACGPLARPADMERLRAVGAEVLRLSPAAGGGLDLAELLDHLGRRGVIGMLLEGGATL 306

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
           A  F++  LVD ++ + +  ++G G   +P+  G
Sbjct: 307 AWGFLSQGLVDEVMYFFAPKLLG-GATAAPMLGG 339


>gi|294900049|ref|XP_002776874.1| riboflavin-specific deaminase, putative [Perkinsus marinus ATCC
           50983]
 gi|239884075|gb|EER08690.1| riboflavin-specific deaminase, putative [Perkinsus marinus ATCC
           50983]
          Length = 332

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 124/313 (39%), Positives = 171/313 (54%), Gaps = 11/313 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAYGGCPHAEVQALEEAGE 65
           D  FM  AL  S      T  NP V C++V+ G +V+G+G     G PHAEV AL +  +
Sbjct: 11  DEDFMRMALVESEEGRMTTPPNPWVGCILVQHGQVVVGKGHHVRKGGPHAEVNALRDMIQ 70

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
                TAYVTLEPCSHYG +PPC + +IE G+ RVVV V+DPD +VSGRG+Q + + G+ 
Sbjct: 71  SGSTLTAYVTLEPCSHYGSTPPCCEALIEVGVGRVVVGVEDPDPKVSGRGIQRMREAGVD 130

Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V    +  E +  L AYL ++      +  K A S + M+      S  ITG  ++   H
Sbjct: 131 VKTGCLTGEIRESLRAYLKQRAMGLPLVVGKAAASLNGMVCCENGSSQWITGREAREDSH 190

Query: 185 -LLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
             LRA S AI+VG+GTVLADD  LT R + GL E  P+R++LDP  ++   +KI+ T   
Sbjct: 191 RTLRALSQAIVVGVGTVLADDCSLTVRGVEGL-EKQPLRVVLDPSARILRTAKILNTEEA 249

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVA 299
             +++V    D        K  I  +  D     DL  +L  L  RGV  +LVEGGA   
Sbjct: 250 PTLVVVGRGAD---RSGLEKVEILEVELDQNGELDLGGVLRHLADRGVFQVLVEGGAKTL 306

Query: 300 HSFINSRLVDSII 312
             FI  ++VD ++
Sbjct: 307 TKFIEKKMVDELV 319


>gi|119899093|ref|YP_934306.1| AMP deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Azoarcus sp. BH72]
 gi|119671506|emb|CAL95419.1| AMP deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Azoarcus sp. BH72]
          Length = 363

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 171/304 (56%), Gaps = 11/304 (3%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGR 84
           T+ NP V C++V+DG ++G G     G  HAEV AL  AGE A GATAYVTLEPCSH+GR
Sbjct: 25  TTPNPRVGCVLVRDGEIVGEGWHQRAGEAHAEVHALRAAGERAAGATAYVTLEPCSHFGR 84

Query: 85  SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLT 143
           +PPC + ++  G+RRVV  ++DP+  V+G GL  L   GI     ++ESE +     +++
Sbjct: 85  TPPCCEALVAAGVRRVVAAMEDPNPLVAGSGLARLRAAGIDTAHGLLESEARELNIGFIS 144

Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203
           R    R  + LK A + D    +A   S  ITG  +++  H  RA++ AIL GIGTV  D
Sbjct: 145 RMTRGRPWVRLKAAATLDGKTALANGVSQWITGEAARSDGHRWRARACAILTGIGTVRED 204

Query: 204 DPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
           DP+LT R  G+  E  P+R+++D   ++  +++I++    APV+I T  ++   A   R 
Sbjct: 205 DPQLTVR--GVPCERQPLRVVVDARLEIGREARILQG---APVLIATAIEEGERAAELRA 259

Query: 263 KNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
               ++       K     LL  L  RG+  L VE G  +  S +    VD ++LY + +
Sbjct: 260 AGHEVLSLANEAGKVALPALLQALAARGINELHVEAGFKLNGSLLREGCVDELLLYMAPM 319

Query: 319 VIGE 322
           ++G+
Sbjct: 320 LVGD 323


>gi|94264512|ref|ZP_01288299.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific
           deaminase-like [delta proteobacterium MLMS-1]
 gi|93455071|gb|EAT05298.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific
           deaminase-like [delta proteobacterium MLMS-1]
          Length = 374

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 135/372 (36%), Positives = 188/372 (50%), Gaps = 22/372 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ D  +M  AL  +R  VG T+ NP V  ++VK+G V+G+G     G PHAE +AL  
Sbjct: 1   MTAADLTYMRLALAEARKGVGKTAPNPCVGAVVVKNGRVVGKGWHRKIGQPHAEAEALRA 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A GAT YVTLEPC+H GR+PPC++ II  GIRRVV  + DP     G G + L   
Sbjct: 61  AGEAAAGATIYVTLEPCNHLGRTPPCSEAIIAAGIRRVVYGLADPHEVARG-GAKRLESA 119

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ ++  ++  E +     ++ R    R  + LK AVS D  I  A   S  ITG  ++ 
Sbjct: 120 GLEVLGGVLADECRRLNLPFIKRVTCGRPWVLLKAAVSLDGRIAAATGHSQWITGPPARR 179

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSK-IIKT 239
             H LR QSDAILVG GTVLADDP LT RL  G +   P+R++LD   +    ++ +I+ 
Sbjct: 180 LAHRLRQQSDAILVGSGTVLADDPSLTTRLPGGRRGRDPLRVVLDSRLQTPPTARMLIQQ 239

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIY--------------CDCRDLKKLLTILVGR 285
           +  A  I          A A       ++               C   DL ++L  L   
Sbjct: 240 SPAATWIFCAPEAATERATALEAAGARVVRLEPTPGGQSGPEPNCSGLDLWQVLRELAAN 299

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCV 341
           GV  LLVEGG  V  SF+   L D  +   + ++IG  G+P  +PL    ++K      V
Sbjct: 300 GVNQLLVEGGGRVHGSFLRQNLADEAVFCIAPLLIGADGLPVVAPLNCKRVDKAPRLREV 359

Query: 342 RRDYFGSDVCLE 353
                G D+ L 
Sbjct: 360 SSRRLGDDIMLR 371


>gi|2766596|gb|AAB95439.1| homologue of Bacillus subtilis ribG [Shigella flexneri]
          Length = 245

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/243 (42%), Positives = 140/243 (57%), Gaps = 12/243 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEPEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP LT R + L E +           P+RI++D   +++ + 
Sbjct: 183 QRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEH 242

Query: 235 KII 237
           +I+
Sbjct: 243 RIV 245


>gi|326573500|gb|EGE23466.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis O35E]
          Length = 350

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 123/362 (33%), Positives = 185/362 (51%), Gaps = 39/362 (10%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D  +M  A+  ++  +  T  NP+V C++VKD +VIG+G     G PHAE+ AL +A   
Sbjct: 10  DIYYMQLAIAAAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKAQ 69

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G + +GATAYVTLEPCSH GR+PPCA  +I   ++RVV+   DP+ +V+G G++ L   G
Sbjct: 70  GFDTKGATAYVTLEPCSHTGRTPPCADALIAADLKRVVIASLDPNPKVAGNGIKKLQNAG 129

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I ++  + + +       +L        ++ LK A S D    MA   S  ITG  ++  
Sbjct: 130 IEVLVGVCDQQAAALNLGFLKAMRMGLPYVRLKTASSLDGRTAMASGESKWITGIEARED 189

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEH---SPMRIILDPHFKLS-LDSKI 236
           V  LRAQS AI+ G GT++AD+P LT R    G+  H    P  +I+D   +LS LD   
Sbjct: 190 VQRLRAQSAAIITGSGTIIADNPALTVRSKQLGVDLHMLPKPKVVIVDRRNRLSDLDD-- 247

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGG 295
                      V   DD    L +R            DL  LL  LV +     +L+E G
Sbjct: 248 ---------YQVLNRDD---TLIWRN-----------DLMSLLKTLVSQYACYDVLIEAG 284

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCL 352
           + ++ +FI   LVD +I+Y++  ++G+   P     L++   +  F     D  G+D+ L
Sbjct: 285 SELSGAFITEGLVDELIVYQAPCILGQDARPMFACQLDQLVQQYRFGLHSADIIGNDIRL 344

Query: 353 EY 354
            Y
Sbjct: 345 IY 346


>gi|89073130|ref|ZP_01159669.1| Putative pyrimidine deaminase/pyrimidine reductase [Photobacterium
           sp. SKA34]
 gi|89051083|gb|EAR56540.1| Putative pyrimidine deaminase/pyrimidine reductase [Photobacterium
           sp. SKA34]
          Length = 374

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/336 (34%), Positives = 184/336 (54%), Gaps = 24/336 (7%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D R M  A++ ++     T+ NP+V C+I     ++G G     G PHAEV AL++A
Sbjct: 3   TNLDTRLMLRAIQLAKRGCFTTAPNPNVGCVIAIGDEILGEGFHYRAGEPHAEVFALKQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G  A+GATAYVTLEPCSHYGR+PPCA+ +I+ GI RV+  + DP+  V+GRG++ L + G
Sbjct: 63  GTRAKGATAYVTLEPCSHYGRTPPCAEALIKSGISRVICAMVDPNPLVAGRGVEMLQKAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + V   +++ E +    A++ +   K  ++ LK+A S D    +A   S  ITG  ++  
Sbjct: 123 VDVQVGLLKEEAQAINKAFIKQMTTKMPYVELKLASSLDGKTALANGESKWITGPYARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----QEHS------PMRIILDPHFKLS 231
           V   RAQ+ AIL    TV+ADDP L  R + L      E++      P+R+I+D   +L+
Sbjct: 183 VQRHRAQAGAILSTSATVIADDPSLNVRWSELGTLIQDEYAQADVRQPIRVIIDSQNRLT 242

Query: 232 LDSKII----KTALLAPVIIVTENDDPV--LALAFRKKNINIIYCDCRDLKKLLTILVGR 285
              ++     KT L   +    +  D V    +  R+ N  +      DL  L+  L   
Sbjct: 243 PAYQVFHLPGKTILARTMSGNEDWPDSVSQWIIPTRENNQQL------DLTLLMRKLAEN 296

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           G+  + VE GA +A   + ++LVD +ILY++  ++G
Sbjct: 297 GINHIWVEAGAGLAGGLLEAQLVDCLILYQAPKLMG 332


>gi|295088113|emb|CBK69636.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bacteroides xylanisolvens XB1A]
          Length = 351

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/351 (33%), Positives = 181/351 (51%), Gaps = 22/351 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + ++M   +  ++  +   S NP V  +IV +G +IG G     G  HAEV A+    +E
Sbjct: 9   EEKYMRRCIELAKNGLCNVSPNPMVGAVIVCNGRIIGEGYHIRCGEAHAEVNAIRSVKDE 68

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +  + +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP   V+GRG+Q L   G 
Sbjct: 69  SLLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGR 128

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181
            V   ++E E K  +  ++T  +  R  ITLK A S D+ I +      P+  +  ++  
Sbjct: 129 EVTVGVLEEECKSLIRRFITFNMLHRPFITLKWAESADHFIDIERTDGKPVVLSSPLTSM 188

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH  RA++DAI+VG  T L D+P LT R      H+P+R++LD    L  D +I    +
Sbjct: 189 LVHKKRAEADAIMVGRRTALLDNPALTVR--NWYGHNPIRVVLDRTLSLPNDLQIFDGNV 246

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVA 299
             P +I TE   P       KKNI  I  +     LK+++  L  R + SLLVEGG  + 
Sbjct: 247 --PTLIFTEKQQP------EKKNITYITINFSHNPLKQIMEALYQRKIQSLLVEGGRQLL 298

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
            SFI++ L D   + +       G + S ++   ++ NF     ++F   +
Sbjct: 299 QSFIDNELWDEAYIEKC-----PGRLHSGVKAPQMDDNFSYSIEEHFERQI 344


>gi|290474698|ref|YP_003467578.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Xenorhabdus bovienii SS-2004]
 gi|289174011|emb|CBJ80798.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Xenorhabdus bovienii SS-2004]
          Length = 369

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/333 (35%), Positives = 172/333 (51%), Gaps = 22/333 (6%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D ++MS AL  +      TS NP+V C+IV+   ++G G     G PHAEV AL  AG
Sbjct: 2   TLDEKYMSRALELANQGRFTTSPNPNVGCVIVQGDHIVGEGFHVCAGEPHAEVHALRMAG 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            +A+GATAYVTLEPCSH+G++PPCA  +I  GI RVV  + DP+ +V+GRGL  L Q GI
Sbjct: 62  GKAKGATAYVTLEPCSHHGKTPPCADALIAAGISRVVAAMQDPNPQVAGRGLYKLQQAGI 121

Query: 125 IVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V+  ++ +E +     +L R      ++ LK+  S D    +A   S  IT   ++  V
Sbjct: 122 AVEHGVLMAEAEALNKGFLKRMRTGFPYLQLKMGASLDGRTALASGESKWITSPEARQDV 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLSL 232
              RAQ  AIL    TVLADDP LT R + L           Q   P+RII+D   +++ 
Sbjct: 182 QQFRAQCSAILSSSATVLADDPSLTVRWHELDAEIQAIYPQEQVRQPIRIIVDSQNRVTP 241

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVT 288
             ++++       +  T  D           N++ I         DL  L+  L  R + 
Sbjct: 242 QHQVVQQVGQC-WLARTHTDQQQW-----PDNVDHIVLPAHGGGVDLVLLMMQLGKRQIN 295

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           S+  E G  +A + ++  LVD +ILY +  V+G
Sbjct: 296 SVWAECGPVLAGALLSLGLVDELILYIAPKVLG 328


>gi|298695036|gb|ADI98258.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 343

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/314 (34%), Positives = 157/314 (50%), Gaps = 9/314 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A++ +    G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A GA
Sbjct: 1   MDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAEGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           T Y+TLEPCSH+G +PPC   II+C I +VV    D  +   G     L   GI V+ + 
Sbjct: 61  TIYITLEPCSHFGLTPPCVNKIIDCKIAKVVYATKDNSLDTHGDDT--LRDHGIEVECVD 118

Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
           +         +   + ++   IT+K++ S D         S  IT    K  V+ LR + 
Sbjct: 119 DERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRH 178

Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
           DA+L G  TV  DDP+ T R+   +  +P+++IL     +  + +I +     P+ I TE
Sbjct: 179 DAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWIYTE 235

Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
           N +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  +D 
Sbjct: 236 NPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDE 291

Query: 311 IILYRSQIVIGEGG 324
            ILY +  +IG  G
Sbjct: 292 FILYYAPKLIGGSG 305


>gi|298482442|ref|ZP_07000628.1| riboflavin biosynthesis protein RibD [Bacteroides sp. D22]
 gi|298271421|gb|EFI12996.1| riboflavin biosynthesis protein RibD [Bacteroides sp. D22]
          Length = 351

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 113/311 (36%), Positives = 166/311 (53%), Gaps = 17/311 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + ++M   +  ++  +   S NP V  +IV +G +IG G     G  HAEV A+    +E
Sbjct: 9   EEKYMRRCIELAKNGLCNVSPNPMVGAVIVCNGRIIGEGYHIRCGEAHAEVNAIRSVKDE 68

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +  + +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP   V+GRG+Q L   G 
Sbjct: 69  SLLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGR 128

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181
            V   ++E E K  +  ++T  +  R  ITLK A S D+ I +      P+  +  ++  
Sbjct: 129 EVTVGVLEEECKSLIRRFITFNMLHRPFITLKWAESADHFIDIERTDGKPVVLSSPLTSM 188

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH  RA++DAI+VG  T L D+P LT R      H+P+R++LD    L  D +I    +
Sbjct: 189 LVHKKRAEADAIMVGRRTALLDNPALTVR--NWYGHNPIRVVLDRTLSLPNDLQIFDGNV 246

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVA 299
             P +I TE   P       KKNI  I  +     LK+++  L  R + SLLVEGG  + 
Sbjct: 247 --PTLIFTEKQQP------EKKNITYITINFSHNPLKQIIEALYQRKIQSLLVEGGRQLL 298

Query: 300 HSFINSRLVDS 310
            SFI++ L D 
Sbjct: 299 QSFIDNELWDE 309


>gi|239617610|ref|YP_002940932.1| riboflavin biosynthesis protein RibD [Kosmotoga olearia TBF 19.5.1]
 gi|239506441|gb|ACR79928.1| riboflavin biosynthesis protein RibD [Kosmotoga olearia TBF 19.5.1]
          Length = 345

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 122/354 (34%), Positives = 180/354 (50%), Gaps = 20/354 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D +FM  A+  +R   GL + NP V  +IVK+G ++  G   Y G  HAE+ A+E A   
Sbjct: 2   DEKFMELAIEEARKGEGLVNPNPLVGAVIVKNGKILSTGYHEYFGGRHAEIVAIENAKKM 61

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G + +GA  YVTLEPC HYG++PPC   II  G   V +   DP+  V G+G + L   G
Sbjct: 62  GYDIKGAEIYVTLEPCVHYGKTPPCTDRIIREGFSAVYIGTLDPNPMVHGKGEEKLKNAG 121

Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++E + K  +  +      K   + LK+A+S D  I         IT   ++ +
Sbjct: 122 ICVKHGILEVKAKELIEVFAKYMKTKMPFVALKLAMSLDGFITSMRGKRERITSDRAREK 181

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS-LDSKIIKTAL 241
           VH LR    AI++G  T ++DDP LTCR +   + +P+RIILD   K + ++ K+   A 
Sbjct: 182 VHRLRNYYSAIMIGSKTAISDDPLLTCRYS-FCKRNPIRIILDRSGKTAKVNLKLF--AQ 238

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
               II T +++         +N+ +I  D    + +L  L   G+ S+LVEGGA VA  
Sbjct: 239 EGRTIIFTSSNERW------PENVEVIRKDDLSPEPILKALGKMGIDSVLVEGGANVASQ 292

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           FIN    D I L+ + I  G G   SP +  +  K F   R + +  D+  E I
Sbjct: 293 FIN--YADKIHLFYAPIAFGNG--LSPFDRKF--KGFTTKRVEVYHPDIYWELI 340


>gi|148244868|ref|YP_001219562.1| bifunctional riboflavin biosynthesis protein RibD [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326695|dbj|BAF61838.1| bifunctional riboflavin biosynthesis protein RibD [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 349

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 100/320 (31%), Positives = 173/320 (54%), Gaps = 15/320 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  + + M+ A++ +        +NP V C+IVK   +I +G     G  H E+ AL++ 
Sbjct: 6   SKNETQNMTIAIKLALQGRYGVKSNPMVGCVIVKHSKIIAKGYHESFGQAHGEINALQQI 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
             +A GAT YVTLEPCSH G++P CAQ II  G+++V++ + DP+  V+G+G+  L   G
Sbjct: 66  NYKAHGATLYVTLEPCSHQGKTPSCAQAIINSGVKKVIIAMLDPNPLVNGKGVVMLKYAG 125

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   +++++  I    ++ R    +  I  K+A+S D    M+   S  IT  +++  
Sbjct: 126 IEVKIGLLKNDASILNQGFIKRMQTNQPFIRCKVAMSIDGKTSMSSGESKWITSKVARLD 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           V  LRA   AI+ G GT++ D+P +T RL+G+    P+R+++D   +++ D+ +      
Sbjct: 186 VQKLRANHQAIITGSGTIINDNPLMTVRLDGVNS-KPLRVVIDSKNQIT-DTSLNIFNTD 243

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           AP +I+  ++  VLA                DL  +LT L  +G+ ++L+E G  +  + 
Sbjct: 244 APTLILNPDNTKVLA------------SGKLDLSNVLTQLGNQGINNVLLEAGPKLIGAM 291

Query: 303 INSRLVDSIILYRSQIVIGE 322
           I   L+D  I+Y + I++G 
Sbjct: 292 IKINLIDEFIIYMAPILMGS 311


>gi|18976434|ref|NP_577791.1| riboflavin-specific deaminase [Pyrococcus furiosus DSM 3638]
 gi|18891968|gb|AAL80186.1| riboflavin-specific deaminase [Pyrococcus furiosus DSM 3638]
          Length = 354

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 117/327 (35%), Positives = 172/327 (52%), Gaps = 20/327 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D +FM  ALR +R   GLT+ NP V  ++VKD  +IG G     G  HAEV A+E+A   
Sbjct: 3   DEKFMKLALRLARKGEGLTNPNPMVGAVLVKDNKIIGTGWHKRFGDKHAEVNAIEDAKRK 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G    GAT YVTLEPCSH+G+ PPCA  IIE GI RVV+ + DP+  VSGRG++ L + G
Sbjct: 63  GYTIEGATLYVTLEPCSHWGKQPPCADRIIEEGISRVVIAMVDPNPLVSGRGIKKLKEAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + V   ++E E K     ++     K   +++K+A++ D  I      S  IT   ++ +
Sbjct: 123 VEVKVGVLEEEAKKLNEIFVKYITTKIPFVSIKLALTLDGFIATQNFKSKWITDEKARGE 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           V  LR +  AI+VG  T++ D+P L CR+ G  E    ++ILD   K+   +  IK    
Sbjct: 183 VQKLRRRHMAIMVGANTIIQDNPRLDCRIKGCTEK--FKVILDSQGKV---ADFIKKGHK 237

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL--VGR-GVTSLLVEGGAAVA 299
             V      +  V+    R +    I C+   + +   IL  +G  G+ S+L+EGG  +A
Sbjct: 238 LRVF----ENGKVIVFTKRPEKFKGI-CEAYPITEPFEILKKLGEIGIDSVLIEGG-RIA 291

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP 326
             F+N    D + L+    + G G  P
Sbjct: 292 GEFLN--FADKLYLFYGPKIFGRGIKP 316


>gi|332827503|gb|EGK00249.1| riboflavin biosynthesis protein RibD [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 355

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 112/342 (32%), Positives = 177/342 (51%), Gaps = 23/342 (6%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + + ++M   L+ ++   G TS NP V  +IV  G +IG G     G  HAEV A+    
Sbjct: 2   TVEEKYMYRCLQLAQNGRGFTSPNPMVGAVIVHQGKIIGEGYHRQYGKAHAEVNAVNSVK 61

Query: 65  EEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           ++A  + +T YV+LEPCSH+G++PPCAQ II+  I +VVV   DP   VSGRG++ L  +
Sbjct: 62  DKALLKDSTIYVSLEPCSHHGKTPPCAQLIIDNQIPKVVVACLDPYPAVSGRGIKMLQDR 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS-----VPITG 176
           GI V   ++E E +     + T Q   R +I LK A +QD  I    C        PI+ 
Sbjct: 122 GIEVSVGVLEKEAQALNRVFFTAQTRNRPYIYLKWAQTQDGFIDKERCDGEKPQPTPISN 181

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
             S+  VH  RA++  I++G  T + D+P LT R       +P+RII+D   ++    ++
Sbjct: 182 EFSRMLVHKKRAETAGIMIGTNTAVNDNPSLTTRF--WYGKNPVRIIIDRQGRIPSGYQL 239

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIY--CDCRD--LKKLLTILVGRGVTSLLV 292
               +    II TE D       + K++ ++IY   D  +   + + +IL    + S+LV
Sbjct: 240 FDGKV--KTIIFTEKD------LYEKQSDSVIYIRTDFNESLFENIFSILKSHKIDSVLV 291

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
           EGG  +  S I+ ++ D   +  S    G+ G+ +P   GY+
Sbjct: 292 EGGRELLQSLIDIQMWDEAYIETSNACFGK-GVKAPDIRGYV 332


>gi|89255521|ref|YP_512882.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314040|ref|YP_762763.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Francisella tularensis subsp. holarctica OSU18]
 gi|156501455|ref|YP_001427520.1| riboflavin biosynthesis protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167010294|ref|ZP_02275225.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254366949|ref|ZP_04982986.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp.
           holarctica 257]
 gi|254368485|ref|ZP_04984502.1| hypothetical protein FTAG_01328 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290954250|ref|ZP_06558871.1| riboflavin biosynthesis protein [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312314|ref|ZP_06803101.1| riboflavin biosynthesis protein [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89143352|emb|CAJ78519.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp.
           holarctica LVS]
 gi|115128939|gb|ABI82126.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Francisella tularensis subsp. holarctica OSU18]
 gi|134252776|gb|EBA51870.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp.
           holarctica 257]
 gi|156252058|gb|ABU60564.1| riboflavin biosynthesis protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|157121379|gb|EDO65580.1| hypothetical protein FTAG_01328 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 355

 Score =  170 bits (430), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 116/351 (33%), Positives = 173/351 (49%), Gaps = 18/351 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + D  +M  AL  +       S NP V C+IVK+G +I  G     G  HAEV AL +
Sbjct: 1   MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALTK 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A ++A+GATAYVTLEPC H GR+PPC   II+ GI++V++   DP+ +V+G+G++ L   
Sbjct: 61  AVDKAKGATAYVTLEPCCHCGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120

Query: 123 GIIV-----DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           GI V     ++  +   KIF H     Q  K+  +  K A+S D  I +    S  I+  
Sbjct: 121 GITVEVGLLEKQAQELNKIFFH----YQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSH 176

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            +    H LR   DAIL+G  T++ D+P L  R+N  +     R IL  H      +  +
Sbjct: 177 QAFVNTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHSTRFILANHLTTINHNWRV 236

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR----GVTSLLVE 293
                A  I V       +A    +  I          +  L  L+ +    G+TSLLVE
Sbjct: 237 LDQRHAKTIFVCSKISARVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGKIGITSLLVE 296

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           GG    +SFIN +LV+    Y + ++I +    +P ++  L  N + VR D
Sbjct: 297 GGNKTLNSFINQKLVNEFYTYLAPVIIADY---NPKQQ--LSFNQISVRED 342


>gi|87301124|ref|ZP_01083965.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 5701]
 gi|87284092|gb|EAQ76045.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 5701]
          Length = 354

 Score =  170 bits (430), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 116/337 (34%), Positives = 180/337 (53%), Gaps = 14/337 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  AL  +    G TS NP V  L++  +G+++G G  A  G PHAEV AL +AGE ARG
Sbjct: 1   MERALGLAALAQGRTSPNPLVGALVLDANGLLVGEGFHAAAGRPHAEVGALAQAGERARG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
            T  VTLEPC H+GR+PPC++ +I  GIRRV+V ++DPD RV+G+G++ L Q G  ++  
Sbjct: 61  GTLVVTLEPCCHHGRTPPCSEAVIAAGIRRVIVAMEDPDPRVAGQGIEALRQAGAEVLVG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + +SE +    A+  R    R    LK A+S D    +    S  I+G  S+  VH LRA
Sbjct: 121 VRQSEARNLNAAFCHRLRSGRPLGILKWAMSVDGRTALPNGASQWISGPASREWVHRLRA 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA++VG GT+  DDP LT R  G +   P+R+++     L   +++   +  AP ++ 
Sbjct: 181 RCDAVIVGGGTLRTDDPLLTSR--GRRAIEPLRVVISRELGLPEQAQLWDQS-TAPTLVA 237

Query: 249 TENDDPV---LAL-AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
              + P    L L A   + + +  C+  +   L+  L  RG   +L E G ++A + + 
Sbjct: 238 HGPEAPEPDRLQLDALGVERLELAGCEPLE---LMEALAQRGCNQVLWECGPSLAAAALR 294

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341
              V  +    +  ++G     +PL  G L+ N M +
Sbjct: 295 QGCVQRVAAVMAPKLLGGTAARTPL--GDLQLNSMAM 329


>gi|239939894|ref|ZP_04691831.1| putative riboflavin/cytosine deaminase [Streptomyces roseosporus
           NRRL 15998]
 gi|239986380|ref|ZP_04707044.1| putative riboflavin/cytosine deaminase [Streptomyces roseosporus
           NRRL 11379]
 gi|291443327|ref|ZP_06582717.1| riboflavin biosynthesis protein RibD [Streptomyces roseosporus NRRL
           15998]
 gi|291346274|gb|EFE73178.1| riboflavin biosynthesis protein RibD [Streptomyces roseosporus NRRL
           15998]
          Length = 366

 Score =  170 bits (430), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 181/347 (52%), Gaps = 13/347 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++ D   M  A+  +   +G TS NP V C+I    G V G G     G PHAEV AL  
Sbjct: 3   TAADITAMRRAITLAARGLGSTSPNPVVGCVITDAAGAVAGEGFHQRAGGPHAEVHALRA 62

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A + ARG TAYVTLEPC+H GR+ PC Q ++  GI RVV  V DP+ + +G G   L   
Sbjct: 63  ADDRARGGTAYVTLEPCNHTGRTGPCVQALLAAGISRVVYAVGDPNPQATGGG-DTLRAA 121

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ V++ ++  E      A+LT     R ++  K A + D  I  A   S  IT   ++ 
Sbjct: 122 GVQVEQGLLAEEAGAGNAAWLTSVRLGRPYVLWKYAATLDGRIAAADATSRWITSPEARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPH-FKLSLDSKIIKT 239
            VH LRA++DA+LVG GT   DDP+L  R ++G  +  P+R+++D +   +   ++++  
Sbjct: 182 DVHRLRAEADAVLVGSGTARTDDPQLGVRGIDGATQ--PLRVVVDTNAAAVKPGARVLDA 239

Query: 240 ALLAPVIIVTENDDPV--LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
              AP +I   +D P   L  A   +          DL  LL  L  RGV S+L+EGG  
Sbjct: 240 --TAPTLIAVADDAPAGHLPEAAVLRLPRAATGPGLDLDALLESLHTRGVRSVLLEGGPT 297

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           +A +F+ +  VD ++ Y + +++G G  P+ L +  +      +R D
Sbjct: 298 LAGAFVAAGKVDKVVGYLAPVLLGAG--PAALADAGISTISQALRLD 342


>gi|238063934|ref|ZP_04608643.1| riboflavin biosynthesis protein ribD [Micromonospora sp. ATCC
           39149]
 gi|237885745|gb|EEP74573.1| riboflavin biosynthesis protein ribD [Micromonospora sp. ATCC
           39149]
          Length = 353

 Score =  170 bits (430), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 121/331 (36%), Positives = 170/331 (51%), Gaps = 32/331 (9%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  A+  +   +G TS NP V C+++  DG V+G G  AY G PHAE+ AL +AG  ARG
Sbjct: 10  MRRAIALATRGLGTTSPNPVVGCVLLDADGEVVGEGFHAYAGGPHAEIVALAQAGRRARG 69

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-- 127
            TA VTLEPC H GR  PC+  +I  G+ RVV+ V DP+   SG G   L   G+ V+  
Sbjct: 70  GTAVVTLEPCDHTGRPGPCSHALIAAGVARVVIAVPDPNPVASG-GAATLRAGGLDVEVG 128

Query: 128 -RMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
            R  E+E G +   A+LT       ++T K A + D     A   S+ IT   ++  VH 
Sbjct: 129 VRAAEAEAGNV---AWLTSMRRGWPYVTWKYAATLDGRSAAADGTSMWITSEAARIDVHA 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL---NGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           LR   DA++ G+GTVLADDP LT R      L    P+R+++D   +   D+++   A  
Sbjct: 186 LRGTVDAVIAGVGTVLADDPRLTARNLRDGTLAIRQPLRVVVDTFGRTPADARVRDGAAR 245

Query: 243 APVIIVTE-NDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAH 300
             V    E    P                D R DL  LL  L  RGV + L+EGG  +A 
Sbjct: 246 TWVATAAEVGAGP----------------DGRVDLPALLAELHHRGVRAALLEGGPKLAG 289

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           +F+ + LVD ++ Y +  ++G G  P+ L +
Sbjct: 290 AFLAAGLVDRVVGYVAPKLLGAG--PTALAD 318


>gi|90579822|ref|ZP_01235630.1| Putative pyrimidine deaminase/pyrimidine reductase [Vibrio angustum
           S14]
 gi|90438707|gb|EAS63890.1| Putative pyrimidine deaminase/pyrimidine reductase [Vibrio angustum
           S14]
          Length = 374

 Score =  170 bits (430), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 113/335 (33%), Positives = 181/335 (54%), Gaps = 22/335 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D R M  A++ ++     T+ NP+V C+I     ++G G     G PHAEV AL++A
Sbjct: 3   TNLDTRLMLRAIQLAKRGCFTTAPNPNVGCVIANGDEILGEGFHYRAGEPHAEVFALKQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G  A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RV+  + DP+  V+GRG++ L + G
Sbjct: 63  GVRAKGATAYVTLEPCSHYGRTPPCAEALIKSGVSRVICAMVDPNPLVAGRGVEMLQKAG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + V   +++ E +    A++ +   K  ++ LK+A S D    +A   S  ITG  ++  
Sbjct: 123 VDVQVGLLKEEAQAINKAFIKQMTTKMPYVELKLASSLDGKTALANGESKWITGPYARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231
           V   RAQ+ AIL    TV+ADDP L  R + L               P+R+I+D   +L+
Sbjct: 183 VQRHRAQAGAILSTSATVMADDPSLNVRWSELGTQIQDEYPQADVRQPIRVIIDSQNRLT 242

Query: 232 LDSKIIK---TALLAPVIIVTEN--DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286
              ++       +LA   I  E+  D     +   ++N   +     DL  L+  L   G
Sbjct: 243 PAYQLFHLPGETILARAEIGNEDWPDSVSQWIIPTRENSQQL-----DLTLLMRKLAENG 297

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           +  + VE GA +A   + ++LVD +ILY++  ++G
Sbjct: 298 INHIWVEAGAGLAGGLLEAQLVDCLILYQAPKLMG 332


>gi|326560692|gb|EGE11060.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis
           46P47B1]
          Length = 350

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 123/362 (33%), Positives = 185/362 (51%), Gaps = 39/362 (10%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D  +M  A+  ++  +  T  NP+V C++VKD +VIG+G     G PHAE+ AL +A   
Sbjct: 10  DIYYMQLAIAAAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKAQ 69

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G + +GATAYVTLEPCSH GR+PPCA  +I   ++RVV+   DP+ +V+G G++ L   G
Sbjct: 70  GFDTKGATAYVTLEPCSHTGRTPPCADALIAADLKRVVIASLDPNPKVAGNGIKKLQNAG 129

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I ++  + + +       +L        ++ LK A S D    MA   S  ITG  ++  
Sbjct: 130 IEVLVGVCDQQAAALNLGFLKAMRMGLPYVRLKTASSLDGRTAMASGESKWITGTEARED 189

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEH---SPMRIILDPHFKLS-LDSKI 236
           V  LRAQS AI+ G GT++AD+P LT R    G+  H    P  +I+D   +LS LD   
Sbjct: 190 VQRLRAQSAAIVTGSGTIIADNPALTVRSKQLGVDLHMLPKPKVVIVDRRNRLSDLDD-- 247

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGG 295
                      V   DD    L +R            DL  LL  LV +     +L+E G
Sbjct: 248 ---------YQVLNRDD---TLIWRN-----------DLMSLLKTLVSQYACYDVLIEAG 284

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCL 352
           + ++ +FI   LVD +I+Y++  ++G+   P     L++   +  F     D  G+D+ L
Sbjct: 285 SELSGAFITEGLVDELIVYQAPCILGQDARPMFACQLDQLVQQYRFGLHSADIIGNDIRL 344

Query: 353 EY 354
            Y
Sbjct: 345 IY 346


>gi|313680606|ref|YP_004058345.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Oceanithermus profundus DSM 14977]
 gi|313153321|gb|ADR37172.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Oceanithermus profundus DSM 14977]
          Length = 380

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 118/375 (31%), Positives = 181/375 (48%), Gaps = 23/375 (6%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S  D RFM  AL  +    G TS NP V  ++V  G ++G G     G PHAEV AL
Sbjct: 1   MSFSDPDRRFMQRALALAERARGHTSPNPIVGAVVVSGGRIVGEGFHPRAGEPHAEVFAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AGE ARGAT YVTLEPC+H+GR+PPC+  ++E G+ RVV    DP    SG G + L 
Sbjct: 61  RQAGEAARGATVYVTLEPCNHHGRTPPCSLALLEAGVSRVVYAAADPG-ETSGGGAERLR 119

Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + G+ V+  ++E E ++   A+       R  +  K A++ D  +   G G   ++  +S
Sbjct: 120 RAGVRVEAGLLEEEARVQNRAFFHAAAFGRPFVLWKAALTLDGRVAARGRGGEAVSNTLS 179

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----------PMRIILDPHFK 229
               H  R    A+ VG GTV ADDP LT R    +  +          P++++ D   K
Sbjct: 180 HRVAHGYRQACAAVAVGAGTVRADDPALTVRAPDFRAFAAMVEPPPLRDPLKVVFDSQAK 239

Query: 230 LSLDSKIIKTALLAP----VIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTI 281
               +++ +          ++ V E+ D     A       ++     +    ++  L  
Sbjct: 240 TPPSARLFEPGPRGEPARVLVFVGEDADADRVQALEAAGAEVVSLPAGEGGLSVEAALAE 299

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEK--NF 338
           L  RGV SLL+EGG  +A SF+ +  VD    + +  ++GEG G+      G +++   F
Sbjct: 300 LYRRGVDSLLLEGGPRLAGSFVRAGRVDRAAFFVAPRILGEGRGLIEGFSFGSMQRAMRF 359

Query: 339 MCVRRDYFGSDVCLE 353
           +  R +    D+ LE
Sbjct: 360 LPERSEVLEGDLWLE 374


>gi|257066652|ref|YP_003152908.1| riboflavin biosynthesis protein RibD [Anaerococcus prevotii DSM
           20548]
 gi|256798532|gb|ACV29187.1| riboflavin biosynthesis protein RibD [Anaerococcus prevotii DSM
           20548]
          Length = 357

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 109/316 (34%), Positives = 157/316 (49%), Gaps = 15/316 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
            M      +R   G   TNP V  +++K+G +I +G      C HAE+       E A G
Sbjct: 6   LMRECFDLARKGAGKVLTNPMVGAILIKNGEIIAKGYHKSNTCDHAEIDCFNNLKESAEG 65

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           AT  V LEPCSH+G+ PPC   +I+  ++RVV+   D + +V   GL  L + GI ++  
Sbjct: 66  ATLIVNLEPCSHFGKHPPCVDEVIKRKVKRVVIANLDTNPKVD--GLSKLKEAGIEVITG 123

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++E EG+     +       R  + LK A S D  I  A   S  IT   S+  VH LR+
Sbjct: 124 VLEDEGRKLNEKFFFNMENNRPLVALKYAQSLDGKIATASFDSKWITNEESRAYVHKLRS 183

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DAILVG  T+  D+P LT R+ G    +P RIIL     +  D ++ +        I 
Sbjct: 184 EYDAILVGANTLRQDNPRLTSRIEGGV--NPYRIILSDKLDIDKDREVFRENADKKTYIA 241

Query: 249 TENDDPVLALAFRKKNINIIYC---DCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           T +D  +        N  II C   D R DLK LL  L  R + S+LVEGG+ + +SF+ 
Sbjct: 242 TISDKDIDI------NAEIIRCKEKDGRVDLKDLLDKLYERNIGSVLVEGGSIINNSFLE 295

Query: 305 SRLVDSIILYRSQIVI 320
             LVD I  + + I++
Sbjct: 296 EDLVDKIYQFMAPIIV 311


>gi|149909347|ref|ZP_01898003.1| Putative pyrimidine deaminase/pyrimidine reductase [Moritella sp.
           PE36]
 gi|149807664|gb|EDM67612.1| Putative pyrimidine deaminase/pyrimidine reductase [Moritella sp.
           PE36]
          Length = 440

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 114/359 (31%), Positives = 175/359 (48%), Gaps = 41/359 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D   M  A+  ++     T+ NP+V C++VK   VIG G     G  HAEV AL  AG++
Sbjct: 44  DHLHMQRAIALAQKGRFTTAPNPNVGCVLVKADKVIGEGFHLRAGEAHAEVHALNSAGDD 103

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YVTLEPCSHYGR+PPCA  ++   +  VV+ + DP+ +V+G+G+  L   GI V
Sbjct: 104 AQGATCYVTLEPCSHYGRTPPCAAALVNANVHEVVIAMVDPNPQVAGKGIAILIAAGIKV 163

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++ ++       ++ R  E+R  + LK+A S D    +    S  ITG  +++ V +
Sbjct: 164 RVGLLSAQSHALNPGFILRMREQRPFVRLKMAASLDGRTALKNGESKWITGSAARSDVQV 223

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL----------------------QEHSPMRII 223
            RAQ+ AIL    TV+ DD  L  R + L                      Q   P+R++
Sbjct: 224 YRAQASAILSTASTVIMDDASLNVRYSELGTSQADYPLDYAEKSLIQAEQSQVRQPIRVV 283

Query: 224 LDPHFKLS--LDSKIIKTALLA-------------PVIIVTENDDPVLALAFRKKNINII 268
           LD H +L   L+    +  L A              V + T+N      L     +   I
Sbjct: 284 LDNHRRLDAHLEPSAKELKLFAQPGQILLVNGVKNTVNVATKNSSTEQLLVNESVSRIEI 343

Query: 269 YCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
             D     DL +L+T L  + +  L VE GA +A + + ++LVD II+Y +  ++G+  
Sbjct: 344 EQDSHHNIDLNQLMTTLAQQNINDLWVEAGATLAGALLENKLVDEIIIYLAPKLMGDSA 402


>gi|70726154|ref|YP_253068.1| riboflavin specific deaminase [Staphylococcus haemolyticus
           JCSC1435]
 gi|68446878|dbj|BAE04462.1| riboflavin specific deaminase [Staphylococcus haemolyticus
           JCSC1435]
          Length = 347

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 105/318 (33%), Positives = 164/318 (51%), Gaps = 11/318 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           + FM  A++ ++   G T  NP V  ++V +G ++G G     G  HAEVQAL+ AG+EA
Sbjct: 2   SNFMEYAIQLAQMVKGQTGINPPVGAVVVNNGRIVGLGAHLKQGEKHAEVQALDMAGKEA 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           +G   Y++LEPC+H+G +PPC   IIE G+ +V+  V D  +   G  +  L Q GI V+
Sbjct: 62  KGGIIYISLEPCTHFGSTPPCVNKIIEFGLSKVIYAVKDTTLPSEGDAI--LEQAGIDVE 119

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
                E       +   +  +   IT+K++VS D         S  IT    K  V+ LR
Sbjct: 120 YQYSEEAAALYKDFFKAKSGQIPEITMKVSVSLDGKQATDLGQSKWITNSEVKQDVYHLR 179

Query: 188 AQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
              DA+L G GT+ AD+P  T R+ NG    +P+RI+L     +    ++ + +  + V 
Sbjct: 180 HTHDAVLTGNGTINADNPLYTTRIPNG---KNPIRIVLAKSGNVDFTKQLFQDS-SSEVW 235

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           I TEN      L    +NI +I  D   LK +L  +  RG+ SLL+E G  +   F+ + 
Sbjct: 236 IYTENQ----TLESPNRNIKVICIDKCYLKDILKDIYKRGIGSLLIEAGPRITSKFLQTD 291

Query: 307 LVDSIILYRSQIVIGEGG 324
            ++ +I+Y +  +IG  G
Sbjct: 292 FINQLIIYYAPKIIGGSG 309


>gi|149372326|ref|ZP_01891514.1| riboflavin biosynthesis protein ribD [unidentified eubacterium
           SCB49]
 gi|149354716|gb|EDM43279.1| riboflavin biosynthesis protein ribD [unidentified eubacterium
           SCB49]
          Length = 340

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 107/324 (33%), Positives = 165/324 (50%), Gaps = 24/324 (7%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--R 68
           M   ++ ++  +G T  NP V  +IV D  +IG G     G PHAEV A+    +E    
Sbjct: 1   MFRCIQLAKKGLGYTYPNPLVGSVIVVDDKIIGEGWHLEAGKPHAEVNAINSVTDEKLLE 60

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127
            AT YV+LEPCSH+G++PPCA  I+  GI+ +V+   DP+ +V+G+G+  L Q G  V  
Sbjct: 61  KATIYVSLEPCSHFGKTPPCADLIVTKGIKNIVIGSTDPNPKVAGKGIIKLMQAGCKVKV 120

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG---CGSVPITGFISKNQVH 184
            +++ E       + T Q +KR +I LK A +QD  I          V IT   ++ +VH
Sbjct: 121 GVLQKECDALNKRFFTFQTKKRPYIFLKWAETQDGFIAPKTRNEQAPVWITNKYARQRVH 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            +RA   AIL+G  T LAD+P LT R   +   +P+R+++D   K+   + I      A 
Sbjct: 181 QMRAAEQAILIGTNTALADNPSLTTR--DVIGSNPIRVLIDRQLKVPKTAAIFDEQ--AK 236

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT-----ILVGRGVTSLLVEGGAAVA 299
            I++TE            +N   ++ +C D  K L      +L    + S++VEGGA   
Sbjct: 237 TIVITEKS---------AENTETVHFECVDFNKPLAHQICEVLFKHEIESVIVEGGAQTL 287

Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323
            +FI+  L D   +Y+  +   EG
Sbjct: 288 QTFISENLWDEAHIYKGAVSFTEG 311


>gi|296114110|ref|YP_003628048.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis RH4]
 gi|295921804|gb|ADG62155.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis RH4]
          Length = 350

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 127/366 (34%), Positives = 185/366 (50%), Gaps = 47/366 (12%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D  +M  A+  ++  +  T  NP+V C++VKD +VIG+G     G PHAE+ AL +A   
Sbjct: 10  DIYYMQLAIAAAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKAQ 69

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G + +GATAYVTLEPCSH GR+PPCA  +I   +RRVVV   DP+ +V+G G++ L   G
Sbjct: 70  GFDTKGATAYVTLEPCSHTGRTPPCADALIAANLRRVVVASLDPNPKVAGNGIKKLQNAG 129

Query: 124 I-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
           I     + D+   +    FL A  T       ++ LK A S D     A   S  ITG  
Sbjct: 130 IEVLVGVCDQQAAALNLGFLKAMRT----GLPYVRLKTASSLDGRTATASGESKWITGIE 185

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEH---SPMRIILDPHFKLS-L 232
           ++  V  LRA+S AI+ G GT++AD+P LT R    G+  H    P  +I+D   +LS L
Sbjct: 186 AREDVQRLRAKSAAIVTGSGTIIADNPALTVRSKQLGVDLHMLPKPKVVIVDRRNRLSDL 245

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLL 291
           D              V   DD    L +R            DL  LL  LV +     +L
Sbjct: 246 DD-----------YQVLNRDD---TLIWRN-----------DLMSLLKTLVSQYACYDVL 280

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGS 348
           +E G+ ++ +FI   LVD +I+Y++  ++G+   P     L++   +  F     D  G+
Sbjct: 281 IEAGSELSGAFITEGLVDELIVYQAPCILGQDARPMFACQLDQLVQQYRFGLHSADIIGN 340

Query: 349 DVCLEY 354
           D+ L Y
Sbjct: 341 DIRLIY 346


>gi|240103311|ref|YP_002959620.1| Riboflavin biosynthesis protein ribD (ribD) [Thermococcus
           gammatolerans EJ3]
 gi|239910865|gb|ACS33756.1| Riboflavin biosynthesis protein ribD (ribD) [Thermococcus
           gammatolerans EJ3]
          Length = 408

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 97/227 (42%), Positives = 137/227 (60%), Gaps = 6/227 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S+ D RFM  AL  ++   G  + NP V  +IVKDG VIG G     G  HAEV A+E+
Sbjct: 49  MSNEDERFMRLALELAKRGEGWVNPNPMVGAVIVKDGKVIGVGWHKRFGEKHAEVNAIED 108

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + RGAT YVTLEPCSH+G+ PPCA  II  G +RVVV + DP+  VSGRG++ +
Sbjct: 109 AKRKGHDVRGATMYVTLEPCSHWGKQPPCADRIIREGFKRVVVAMVDPNPLVSGRGIEKM 168

Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            + GI V+  ++E E +     ++    +K   +++K+A++ D  I      S  ITG  
Sbjct: 169 KKAGIEVEVGVLEDEARKLNEIFIKYVTKKMPFVSIKLALTLDGFIATETGSSQWITGEK 228

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILD 225
           ++ +V  LR +  AI+VG GTVLAD+P L CRL    E   +++ILD
Sbjct: 229 ARQKVQELRRRHMAIMVGSGTVLADNPRLNCRLENCPEK--IKVILD 273


>gi|198273955|ref|ZP_03206487.1| hypothetical protein BACPLE_00091 [Bacteroides plebeius DSM 17135]
 gi|198273033|gb|EDY97302.1| hypothetical protein BACPLE_00091 [Bacteroides plebeius DSM 17135]
          Length = 346

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 112/342 (32%), Positives = 180/342 (52%), Gaps = 18/342 (5%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D ++M   ++ +R  +   + NP V  +IV+DG +IG G     G  HAEV A+    
Sbjct: 2   TIDEKYMRRCIQLARNGICHAAPNPMVGAVIVRDGKIIGEGYHVRCGEGHAEVNAIASVK 61

Query: 65  EEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           +E+  + AT YV+LEPCSHYG++PPCA  II  GI RVVV   DP   V+GRG+Q L   
Sbjct: 62  DESLLKDATIYVSLEPCSHYGKTPPCADLIIRKGIPRVVVGCVDPFSLVAGRGIQKLRDA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM--AGCGSVPITGFIS 179
           GI V   ++E E +  + A++T  ++KR +ITLK A S D  + +      +V ++  +S
Sbjct: 122 GIEVTVGVLEKECRELIRAFVTFNLKKRPYITLKWAQSADGFLDIRREDGNAVRLSTPLS 181

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
              VH +RA+  AILVG  T   D+P LT R       +P+R+++D    L     +   
Sbjct: 182 TLAVHKMRAEQKAILVGRRTAQLDNPSLTVR--EWYGQNPLRLVIDRQLTLPPHLHLFDG 239

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAA 297
           +   P ++ TE +          +N+  +  D     L +++ +L  + + +LLVEGG+ 
Sbjct: 240 S--TPTLVFTEKEKAA------TQNLTYVTLDFGQNILPQIMQVLYEQKIQTLLVEGGSQ 291

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
              +F+   L D   +  +++ + + GIP+PL     E  F 
Sbjct: 292 TLQAFLEQGLWDEAFIEHARVTLHD-GIPAPLLPHGQESRFF 332


>gi|56551372|ref|YP_162211.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56542946|gb|AAV89100.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 323

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 114/320 (35%), Positives = 164/320 (51%), Gaps = 44/320 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D R+M AA+       GLT+ +PSV C+IV KD  +IGRG T  GG PHAE  AL +  +
Sbjct: 7   DIRWMQAAIALGERSKGLTAPSPSVGCIIVNKDNQIIGRGWTQSGGRPHAEAMALSQC-Q 65

Query: 66  EARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
             +GAT YVTLEPC+H   R P C+  ++     RVV+   DPD R +G+G+  +   GI
Sbjct: 66  SLKGATVYVTLEPCAHKSNRGPTCSDSLVAAQPERVVIACRDPDPRTNGQGISKMVAAGI 125

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V+  ++E +    +  + +RQ++ R ++TLK+A S D  I +    S  ITG  ++   
Sbjct: 126 KVECGLLEKQAAQSMSGFFSRQLKARPYVTLKMATSLDGCIALENGESQWITGERARAHA 185

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           HL R +S+ I+VG  T+  D P L  RL GL + SP + +L  H ++   S  I   L  
Sbjct: 186 HLERMRSELIVVGRKTLEFDKPSLNVRLQGLGDRSPKKAVLG-HGEIP--SGWI--GLRE 240

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P  I+    D V                                   L+EGGA  A +F+
Sbjct: 241 PTDIIKTTADHV-----------------------------------LIEGGAKTAAAFL 265

Query: 304 NSRLVDSIILYRSQIVIGEG 323
              LVD I+LYR+ I+IG+G
Sbjct: 266 KGDLVDRILLYRAPILIGKG 285


>gi|299147398|ref|ZP_07040463.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_1_23]
 gi|298514676|gb|EFI38560.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_1_23]
          Length = 351

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 108/311 (34%), Positives = 166/311 (53%), Gaps = 17/311 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + ++M   +  ++  +     NP+V  +IV +G +IG G     G  HAEV A+    +E
Sbjct: 9   EEKYMRRCIELAKNGLCNVPPNPTVGAVIVCNGRIIGEGYHIRCGEAHAEVNAIRSVKDE 68

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +  + +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP   V+GRG+Q L   G 
Sbjct: 69  SLLKHSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVTGRGIQKLRDAGR 128

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP--ITGFISKN 181
            V   ++E E +  +  ++T     R +ITLK A S D  I +     +P  ++  ++  
Sbjct: 129 EVTVGILEKECQSLIRRFITFNTLHRPYITLKWAESADRFIDIERTSGMPLILSSPLTSM 188

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH  RA++DAI+VG  T L D+P LT R      H+P+R++LD    L  D +I    +
Sbjct: 189 LVHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDLQIFDGNV 246

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVA 299
             P ++ TE   P       + NI  I  D     L++++ +L  R + SLLVEGG+ + 
Sbjct: 247 --PTLVFTEKKQPA------RTNITYISIDFNHNTLEQIMEVLYQRKIQSLLVEGGSQLL 298

Query: 300 HSFINSRLVDS 310
            SFI+  L D 
Sbjct: 299 QSFIDDELWDE 309


>gi|291295639|ref|YP_003507037.1| riboflavin biosynthesis protein RibD [Meiothermus ruber DSM 1279]
 gi|290470598|gb|ADD28017.1| riboflavin biosynthesis protein RibD [Meiothermus ruber DSM 1279]
          Length = 384

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 114/346 (32%), Positives = 179/346 (51%), Gaps = 36/346 (10%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D R++  AL+ +    G T  NP V  ++VK+G ++G G     G PHAEV AL +AG
Sbjct: 9   ALDERYLRRALQLAERGRGHTHPNPLVGAVLVKNGRIVGEGYHPRAGEPHAEVFALHQAG 68

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           EEA+GAT YV+LEPC H+GR+PPC+  ++E G+ RVVV   DP+ +  G GL+ L   G+
Sbjct: 69  EEAQGATLYVSLEPCDHHGRTPPCSLALLEAGVGRVVVAARDPNPKAQG-GLERLRSAGV 127

Query: 125 IVD-RMMESEGK----IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
            V+  ++E+E +    +F HA   R    R  +  K A+S D  +      +  ++  +S
Sbjct: 128 AVELGLLEAEARAQNEVFFHALRRR----RPFVLWKAALSLDGQVATRSGHAAWVSNALS 183

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR------LNGLQEHSPMRIILDPHFKLSLD 233
           +      R    A++VG+GTVLADDP+LT R         L E  P+R   DP  K+ LD
Sbjct: 184 RRVAQGYRQWLPAVMVGVGTVLADDPQLTVREPDFRAFPHLLEPPPLR---DP-LKVVLD 239

Query: 234 SKIIKTA---LLAP--------VIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKK 277
           ++        L AP        V ++     P   +   +++   +    R+     L+ 
Sbjct: 240 TEARTPPGARLFAPGPRGEPARVAVLVGAGAPAARIRVLERHGATVVELPREGGRVSLEA 299

Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            L  L  +GV  +L+EGG  +A + +    VD + L+ +  ++GEG
Sbjct: 300 ALAWLWEQGVDGVLLEGGPTLAGALLRKGWVDKVALFLAPKLVGEG 345


>gi|46575874|dbj|BAB88916.2| deaminase [Burkholderia glumae]
          Length = 360

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 116/331 (35%), Positives = 177/331 (53%), Gaps = 34/331 (10%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
           M+ AL  +   +  T+ NP V C+IVK G++IG G T   G  HAEV+A+++A   G E 
Sbjct: 1   MAKALELAARGLYTTTPNPRVGCVIVKHGMLIGEGYTQPAGHDHAEVRAMKDARSRGHEL 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD-DPDVRVSGRGLQWLSQKGIIV 126
           RGATAYVTLEPCSHYGR+PPCA+ ++E GI     C D  P+  VSGRG   L + GI V
Sbjct: 61  RGATAYVTLEPCSHYGRTPPCAKGLVEAGI--APWCGDGGPEPAVSGRGYAMLREAGIEV 118

Query: 127 -DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E +     +++R    R  + +K+A S D    +    S  ITG  ++   H 
Sbjct: 119 RGGVLEDEARELNIGFVSRMTRARPWVRMKMAASLDGRSALPDGASSWITGSAARADGHA 178

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            RA++ +IL GIGTV  DDP+L  R  G+     P R+++D    L  +++++  A   P
Sbjct: 179 WRARACSILTGIGTVRRDDPQLNVR--GIDTPRQPRRVLIDARLDLPHEARLM--AGPPP 234

Query: 245 VIIVTEND--------------DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           ++   E D                V++LA  + ++        DL  +L  L GRG   L
Sbjct: 235 LVFCGELDASARARADALRRRGAEVVSLASARGSV--------DLAAVLAELGGRGDNEL 286

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            VE G  ++ + + + LVD +++Y +  ++G
Sbjct: 287 HVEAGRTLSGALLRAGLVDELLVYVAPSLLG 317


>gi|241761018|ref|ZP_04759107.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374637|gb|EER64098.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 323

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 114/320 (35%), Positives = 165/320 (51%), Gaps = 44/320 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D R+M AA+       GLT+ +PSV C+IV KD  +IGRG T  GG PHAE  AL +  +
Sbjct: 7   DIRWMQAAIALGERSKGLTAPSPSVGCIIVNKDNQIIGRGWTQSGGRPHAEAMALSQC-Q 65

Query: 66  EARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
             +GAT YVTLEPC+H   R P C+  ++     RVV+   DPD R +G+G+  +   GI
Sbjct: 66  SLKGATVYVTLEPCAHKSNRGPTCSDSLVAALPERVVIACRDPDPRTNGQGISKMVAAGI 125

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V+  ++E +    +  + +RQ++ R ++TLK+A S D  I +    S  ITG  ++   
Sbjct: 126 KVECGLLEKQAAQSMSGFFSRQLKARPYVTLKMATSLDGCIALENGESQWITGERARAHA 185

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           HL R +S+ I+VG  T+  D P L  RL GL + SP + +L  H ++   S  I   L  
Sbjct: 186 HLERMRSELIVVGRKTLEFDKPSLNVRLQGLGDRSPKKAVLG-HGEIP--SGWI--GLRE 240

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P  I+    D V                                   L+EGGA  A +F+
Sbjct: 241 PTDIIKTTADHV-----------------------------------LIEGGAKTAAAFL 265

Query: 304 NSRLVDSIILYRSQIVIGEG 323
            + LVD I+LYR+ I+IG+G
Sbjct: 266 KADLVDRILLYRAPILIGKG 285


>gi|114562213|ref|YP_749726.1| riboflavin biosynthesis protein RibD [Shewanella frigidimarina
           NCIMB 400]
 gi|114333506|gb|ABI70888.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Shewanella frigidimarina NCIMB 400]
          Length = 381

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 118/339 (34%), Positives = 179/339 (52%), Gaps = 20/339 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE-- 61
           S+FD + MS A+  +      T  NP V C+IV    +IG G     G  HAEV AL+  
Sbjct: 5   STFDTQMMSRAIALAEKGRYTTRPNPCVGCVIVYQNKIIGEGYHQRAGQGHAEVNALKMV 64

Query: 62  -EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            + G  A GATAYVTLEPCSHYGR+PPCA  +I   + RVVV V D +  VSGRG+  L 
Sbjct: 65  HDNGLSAEGATAYVTLEPCSHYGRTPPCALGLINAKVARVVVAVTDANPEVSGRGITLLR 124

Query: 121 QKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + G+ VD  +  E    L+  ++ R       IT+KIA S D    ++   S  ITG  +
Sbjct: 125 EAGVEVDVGLLCEQAYDLNLGFMKRMKTGLPWITVKIAASLDGKTALSNGVSKWITGSAA 184

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFK 229
           +  V   RA   A++ G+ T+L DDP L  R   L E            P+R++LD   +
Sbjct: 185 RADVQKYRASHCALITGVETILVDDPSLNVRYETLGELTTRHTKDEFFQPLRVVLDSRAR 244

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY--CDCRDLKKLLTIL--VGR 285
           L+   ++   ++ +P+++V+    P    A   ++++ +   CD      LL +L  +G+
Sbjct: 245 LTATQQLF--SIQSPILLVSGCHYPESVKAEFPEHVSFLQLTCDSSGRIPLLALLTYLGQ 302

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
              S+L+E GA +A +F+   LVD ++LY++  ++G  G
Sbjct: 303 HANSVLIEAGATLAGAFVAQGLVDEVVLYQAPKILGSHG 341


>gi|326335510|ref|ZP_08201697.1| riboflavin biosynthesis protein RibD [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325692276|gb|EGD34228.1| riboflavin biosynthesis protein RibD [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 360

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 169/335 (50%), Gaps = 17/335 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M   L  +R  +G T  NP V  +IV  G +IG G     G PHAEV A+    ++
Sbjct: 6   DEKYMQRCLFLARKAMGYTYPNPLVGSVIVHQGKIIGEGWHTKAGEPHAEVNAITSVRDK 65

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG- 123
           +  + +T YV LEPC H+G++PPCA  IIE GI R+V+   D   +V+G+G+Q L Q G 
Sbjct: 66  SLLKESTLYVNLEPCVHFGKTPPCADLIIEKGIPRIVIGCTDIYSKVAGKGIQRLQQAGR 125

Query: 124 -IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG---MAGCGSVPITGFIS 179
            +++D ++E E +     + T   +KR +I LK A ++D  I          V IT   S
Sbjct: 126 EVVLD-VLEQESQALNIRFFTFHSQKRPYIILKWAQTRDGFIAPQQRKNKAPVWITNDFS 184

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   HL RAQ  AILVG  TV+ D+P LT R      ++P+RI++D    L  DS  +  
Sbjct: 185 QQLTHLWRAQEGAILVGKSTVVQDNPSLTTRY--WVGNTPLRIVIDASHSLP-DSLAVFQ 241

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
            +   V    E  D    ++F   N +         K++   L  + V SL+VEGG  V 
Sbjct: 242 KMPTVVFTSKEMTD-TFNVSFVPFNPSFSMP-----KQVCNYLYEKNVQSLIVEGGTQVL 295

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
             FIN RL D   ++       EG     L++G L
Sbjct: 296 QQFINERLWDEARIFIGNKRFSEGVKAPLLQDGNL 330


>gi|289550476|ref|YP_003471380.1| Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Staphylococcus lugdunensis HKU09-01]
 gi|289180008|gb|ADC87253.1| Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Staphylococcus lugdunensis HKU09-01]
          Length = 368

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 111/319 (34%), Positives = 167/319 (52%), Gaps = 17/319 (5%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           ++S A++ ++   G T  NP V  ++VK+G +IG G     G  HAEVQA++ AG+EA+G
Sbjct: 25  YLSKAIQLAKMVKGQTGVNPPVGAVVVKNGRIIGLGAHLKQGEKHAEVQAIDMAGDEAQG 84

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           AT YV+L+PC+HYG +PPC   II+ G+ +VV  V   D  +  +  + L+Q GI V + 
Sbjct: 85  ATIYVSLQPCTHYGSTPPCVNKIIDHGLDKVVYAV--KDTTLPSKSDEILTQAGIQVYQQ 142

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            + E       +   + EK   IT+K++ S D         S  IT    K  V+ LR  
Sbjct: 143 FDHEAYCLYEDFFKAKAEKIPEITVKVSTSIDGKQATDYGQSQWITNKTVKQDVYRLRHS 202

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIIL----DPHFKLSLDSKIIKTALLAPV 245
            DA+L G  TVLAD+P+ T R+   +   P+R+IL    D  F L +         L+ +
Sbjct: 203 HDAVLTGNKTVLADNPQYTTRVKDGKH--PIRVILSRSGDVDFSLDMFHD-----QLSDI 255

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
            I TE  D  L        IN +  +C+ +  +L  L  +GV  LLVE G  V   F+  
Sbjct: 256 WIYTE--DATLTTTLPNVFINYM-SNCK-IPDILQDLYKKGVGRLLVEAGPKVTSLFLQQ 311

Query: 306 RLVDSIILYRSQIVIGEGG 324
           +LV+ +I+Y +  +IG  G
Sbjct: 312 QLVNQLIIYFAPKLIGGSG 330


>gi|312134474|ref|YP_004001812.1| riboflavin biosynthesis protein ribd [Caldicellulosiruptor
           owensensis OL]
 gi|311774525|gb|ADQ04012.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor
           owensensis OL]
          Length = 371

 Score =  169 bits (428), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 105/313 (33%), Positives = 166/313 (53%), Gaps = 12/313 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
           + +M+ AL  ++    L   NP V C+IVK+G +IG+G     G  HAEV A+E+A   G
Sbjct: 7   SYYMNMALELAKKASYLVLPNPRVGCVIVKNGTIIGKGYHQKYGEKHAEVLAIEDAIKNG 66

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
              + AT YV+LEPCSH+G+ PPC + II+ GI++VVV   DP+  V+G+G+Q L Q GI
Sbjct: 67  YSLKNATMYVSLEPCSHFGKQPPCTEAIIKSGIKKVVVATRDPNPIVNGKGIQILKQHGI 126

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +V+ +++ E +I    +         +I +K+A S D  I                  V
Sbjct: 127 EVVEGVLQKEAEIVNKEFFKYMKTGIPYIAIKVAQSIDGKIATPSNKRFLFNTDDENVFV 186

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA-LL 242
           H LR +  A LV + TV++D+P L  R  G     P+R++LD   ++ L+  I+KT+   
Sbjct: 187 HSLRQKYMATLVSVNTVISDNPILNARY-GQIVRQPIRVVLDTKLRIPLECNIVKTSDEY 245

Query: 243 APVIIVTEN-DDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296
           +  I+ +EN +D        ++ I IIY         +L    + L  + + S+LVEGG+
Sbjct: 246 STYIVCSENVNDTQKIDLLSQRGIKIIYAKSSEDGHLELSDAFSKLAQQKIISVLVEGGS 305

Query: 297 AVAHSFINSRLVD 309
            +  S +  R+ D
Sbjct: 306 MLNFSLLKKRIAD 318


>gi|251777591|ref|ZP_04820511.1| riboflavin biosynthesis protein RibD [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243081906|gb|EES47796.1| riboflavin biosynthesis protein RibD [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 363

 Score =  169 bits (428), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 110/322 (34%), Positives = 175/322 (54%), Gaps = 9/322 (2%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            + ++M  AL  ++   G  + NP V  LIVKD  +IG G     G  HAEV A+  A +
Sbjct: 1   MNEKYMELALELAKKGEGKVNPNPLVGALIVKDNEIIGAGYHEKYGESHAEVNAINNATK 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
              G+T YVTLEPCSHYG++PPC   IIE  I++V++ + DP+  VSG+ ++ L    I 
Sbjct: 61  SLDGSTIYVTLEPCSHYGKTPPCVDLIIEKKIKKVIIGMLDPNPMVSGKSIKKLKDNDIE 120

Query: 126 VDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   +E E  K    +++         + LK A+S D  I  +   S  IT   S+   H
Sbjct: 121 VIVGVEEEKCKKINESFIKYITSNLPFVILKSAISLDGKIATSIGESKWITSEESRRDGH 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           LLR +  AI+VGI T++ DDPELTCR+ NG    +P+R+I+D + ++ L+SK++  +   
Sbjct: 181 LLRNKLSAIMVGINTIIEDDPELTCRIKNG---KNPIRVIVDSNLRIPLNSKVLNNSDKL 237

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299
            ++  T+  D +       K + +I  + +    DLK+L+  L    + S+L+EGG  + 
Sbjct: 238 TIVATTKYADKLKKQELINKGVRVIEINDKNKKVDLKELMRCLGTLKIDSILIEGGGTLN 297

Query: 300 HSFINSRLVDSIILYRSQIVIG 321
            S +   +VD +  Y +  ++G
Sbjct: 298 FSALEENIVDKVRFYIAPKILG 319


>gi|253735372|ref|ZP_04869537.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|269203407|ref|YP_003282676.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus ED98]
 gi|253726661|gb|EES95390.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|262075697|gb|ACY11670.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus ED98]
          Length = 343

 Score =  169 bits (428), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 106/314 (33%), Positives = 157/314 (50%), Gaps = 9/314 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A++ +    G T  NP V  ++V +G ++G G     G  HAEVQAL+ A + A GA
Sbjct: 1   MDYAIQLANMVQGQTGVNPPVGAVVVNEGRIVGIGAHLRKGDKHAEVQALDMAQQNAEGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           T Y+TLEPCSH+G +PPC   II+C I +VV    D  +   G   + L   GI V+ + 
Sbjct: 61  TIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGD--ETLRAHGIEVECVD 118

Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
           +         +   + ++   IT+K++ S D         S  IT    K  V+ LR + 
Sbjct: 119 DERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRH 178

Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
           DA+L G  TV  DDP+ T R+   +  +P+++IL     +  + +I +     P+ I TE
Sbjct: 179 DAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWIYTE 235

Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
           N +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  +D 
Sbjct: 236 NPN----LTSNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDE 291

Query: 311 IILYRSQIVIGEGG 324
            ILY +  +IG  G
Sbjct: 292 FILYYAPKLIGGSG 305


>gi|161869403|ref|YP_001598570.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/phosphoribosylamino)uracil reductase
           [Neisseria meningitidis 053442]
 gi|161594956|gb|ABX72616.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/phosphoribosylamino)uracil reductase
           [Neisseria meningitidis 053442]
          Length = 305

 Score =  169 bits (428), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 100/264 (37%), Positives = 149/264 (56%), Gaps = 9/264 (3%)

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   GI  
Sbjct: 2   AQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLAMLEAAGIKT 61

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  V +
Sbjct: 62  ECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQV 121

Query: 186 LRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
           LRA+S A+L GIGTVLAD+P L  R    L++  P RI+LD   +L LDS ++       
Sbjct: 122 LRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQSPT 179

Query: 245 VIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGAAVA 299
            I   E D+  L       +I I+      D + DL  L+ +L   G   ++VE G+ + 
Sbjct: 180 YIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELT 239

Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323
            +F+   L D I+LYRS  ++G G
Sbjct: 240 SAFLAEDLADEIVLYRSPKILGGG 263


>gi|325283811|ref|YP_004256352.1| riboflavin biosynthesis protein RibD [Deinococcus proteolyticus
           MRP]
 gi|324315620|gb|ADY26735.1| riboflavin biosynthesis protein RibD [Deinococcus proteolyticus
           MRP]
          Length = 376

 Score =  169 bits (428), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 117/327 (35%), Positives = 177/327 (54%), Gaps = 19/327 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPHAEVQALEE 62
           D  FM+ AL  +   +G TS NP V C++V+     G V+GRG     G PHAEV AL E
Sbjct: 8   DEDFMAQALAEAARGLGRTSPNPPVGCVLVQPNGSGGEVVGRGFHPRAGEPHAEVFALRE 67

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVVV   DP+ +V+GRGL+ L   
Sbjct: 68  AGERARGATAYVTLEPCSHFGRTPPCADALMAAGVARVVVAAGDPNPQVNGRGLERLRAA 127

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM--AGCGSV---PITG 176
           GI V   ++E++       +  R +  R  +  K A++ D  +     G GS     +TG
Sbjct: 128 GIAVQTGVLEAQAVRQQAGFRARMLLGRPFVIYKYAMTLDGKVAALEEGGGSEANGAVTG 187

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
             ++ +V   R ++DAI VG+ T+L DDP+LT R   +    P  +I D   +    ++ 
Sbjct: 188 PEARARVMGWRNEADAIAVGVDTLLTDDPQLTTR-GVVGGRDPRPVIFDRQGRTPPTARA 246

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
           ++   +  V+     + P LA      +   +      L++ L  L   GV++LL+EGG 
Sbjct: 247 LRPGAV--VVTAPGAEAPALA------DAGAVLLPAATLEEALRGLHDLGVSTLLLEGGP 298

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +A +F  S L+D +  + +  ++G G
Sbjct: 299 TLASAFAESDLIDEVRAFIAPKLLGAG 325


>gi|315657966|ref|ZP_07910840.1| riboflavin biosynthesis protein RibD [Staphylococcus lugdunensis
           M23590]
 gi|315497002|gb|EFU85323.1| riboflavin biosynthesis protein RibD [Staphylococcus lugdunensis
           M23590]
          Length = 383

 Score =  169 bits (428), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 110/319 (34%), Positives = 165/319 (51%), Gaps = 17/319 (5%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           ++S A++ ++   G T  NP V  ++VK+G +IG G     G  HAEVQA++ AG+EA+G
Sbjct: 40  YLSKAIQLAKMVKGQTGVNPPVGAVVVKNGRIIGLGAHLKQGEKHAEVQAIDMAGDEAQG 99

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           AT YV+L+PC+HYG +PPC   II+ G+ +VV  V   D  +  +  + L+Q GI V + 
Sbjct: 100 ATIYVSLQPCTHYGSTPPCVNKIIDHGLDKVVYAV--KDTTLPSKSDEILTQAGIQVYQQ 157

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            + E       +   + EK   IT+K++ S D         S  IT    K  V+ LR  
Sbjct: 158 FDHEAYCLYEDFFKAKAEKIPEITVKVSTSIDGKQATDYGQSQWITNKTVKQDVYRLRHS 217

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIIL----DPHFKLSLDSKIIKTALLAPV 245
            DA+L G  TVLAD+P+ T R+   +   P+R+IL    D  F L +         L+ +
Sbjct: 218 HDAVLTGNKTVLADNPQYTTRVKDGKH--PIRVILSRSGDVDFSLDMFHD-----QLSDI 270

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
            I TE+      L     N+ I Y     +  +L  L  +GV  LLVE G  V   F+  
Sbjct: 271 WIYTEDATLTTTLP----NVFINYMSNCKIPDILQDLYKKGVGRLLVEAGPKVTSLFLQQ 326

Query: 306 RLVDSIILYRSQIVIGEGG 324
           +LV+ +I+Y +  +IG  G
Sbjct: 327 QLVNQLIIYFAPKLIGGSG 345


>gi|262395034|ref|YP_003286888.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio sp. Ex25]
 gi|262338628|gb|ACY52423.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio sp. Ex25]
          Length = 375

 Score =  169 bits (428), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 116/336 (34%), Positives = 171/336 (50%), Gaps = 28/336 (8%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   MS A++ +R  +  T+ NP+V C+IV+D  ++G G     G PHAEV A+  A
Sbjct: 11  SDLDFAMMSRAIKLARRGIYTTAPNPNVGCVIVRDEEIVGEGYHHRAGEPHAEVHAMRMA 70

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE+A GATAYVTLEPCSHYGR+PPCA+ +I+  + RVV  + DP+ +V+GRG+Q L   G
Sbjct: 71  GEKAVGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMVDPNPKVAGRGIQMLRDAG 130

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++E +       ++         + LK+A S D    ++   S  IT  +++  
Sbjct: 131 IEVQIGLLEQDALALNPGFIKYMRTGMPFVQLKMAASLDGQSALSNGQSQWITSPVARQD 190

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLS 231
           V   RA S  IL    TV+ D+  L  R + L           +   P+R+ILD    L+
Sbjct: 191 VQRYRAMSGGILSTSKTVIDDNASLNVRWDDLPTSVQAQYLREELRQPVRVILDRQNHLT 250

Query: 232 LDSKIIKTALLAPVIIVTENDD--PVLALAFRKKNINIIYCDCRDLKKLLT-ILVGRGVT 288
              K+  T      +IV+ + D  P+L  A           D  DL   L  I     + 
Sbjct: 251 DALKLFHTD--GERVIVSPDGDCIPLLDSA-----------DQIDLSTTLKRISDEHHIN 297

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            L VE GA +A + I + LVD +I+Y +  ++G  G
Sbjct: 298 HLWVEAGATLASAMIKANLVDELIVYLAPKLMGSDG 333


>gi|57640359|ref|YP_182837.1| riboflavin biosynthesis protein RibD [Thermococcus kodakarensis
           KOD1]
 gi|57158683|dbj|BAD84613.1| riboflavin biosynthesis protein RibD [Thermococcus kodakarensis
           KOD1]
          Length = 353

 Score =  169 bits (428), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 121/331 (36%), Positives = 183/331 (55%), Gaps = 28/331 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D +FM  AL  ++   G T+ NP V  +IVKDG +IG G     G  HAE+ A+E+A   
Sbjct: 5   DEKFMRLALELAKRGEGWTNPNPMVGAVIVKDGKIIGVGWHRKFGEKHAEINAIEDAKAK 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G + RGAT YVTLEPCSH+G+ PPCA  II+ G +RVVV ++DP+  V+G+G++ + + G
Sbjct: 65  GYDVRGATMYVTLEPCSHWGKQPPCADRIIQEGFKRVVVAMEDPNPLVAGQGIEKMRKAG 124

Query: 124 IIVDRMMESE-----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
           I V+  +  E      +IFL  Y+T ++     +++K+A++ D  I      S  ITG  
Sbjct: 125 IEVEVGLLEEEARKLNEIFLK-YITTKL---PFVSIKLALTLDGFIATETGSSKWITGEK 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++ +V  LR +  AI+VG GTVLAD+P L CRL    E   +++ILD   +++ + +  +
Sbjct: 181 ARQRVQELRRKHMAIMVGSGTVLADNPRLNCRLENCPEK--VKVILDRSGRVADEMRKGR 238

Query: 239 TALL---APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
              L     VI  TE  +    +A        I    + LKKL  +    G+ S+LVEGG
Sbjct: 239 KFRLFEDGRVIFFTEKPEKFKGIA----EAYPITEPAKILKKLGEL----GIDSVLVEGG 290

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
             +A  F++  L D + L+    + G G  P
Sbjct: 291 -RIACQFLS--LADKLYLFYGPKLFGRGIKP 318


>gi|124268129|ref|YP_001022133.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Methylibium petroleiphilum PM1]
 gi|124260904|gb|ABM95898.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Methylibium petroleiphilum PM1]
          Length = 377

 Score =  169 bits (428), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 124/364 (34%), Positives = 192/364 (52%), Gaps = 33/364 (9%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQAL---EEAGEEARG 69
           ALR +   +GL+  NP V C+I   DG ++  G T   G  HAEV AL   + AG   RG
Sbjct: 12  ALRNANEAIGLSDPNPRVGCVITAPDGRLLASGHTQRAGSAHAEVSALRAAQAAGHTVRG 71

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            TA+VTLEPCSH+GR+PPC   ++E G+  V+V + DP+  V+G G+  L   GI V  +
Sbjct: 72  GTAWVTLEPCSHHGRTPPCCDALVEAGVAHVMVALQDPNPLVAGHGIGRLRAAGIDVTVL 131

Query: 130 MESE-----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
              +      +     +L+R + +R  + LKIA S D    +    S  ITG  ++   H
Sbjct: 132 APGDPVAIAARELNIGFLSRMLRQRPWVRLKIAASLDGRTALDNGLSQWITGDAARTDGH 191

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTA-- 240
             R ++ A+L GIGTV+ DDP L  RL    LQ   P R+++D    ++LD++I+     
Sbjct: 192 AYRKRAGAVLTGIGTVIDDDPRLDVRLVDTVLQ---PCRVVVDSKLDIALDARILSPPGE 248

Query: 241 -LLAPVIIVTENDDP-VLALAFRKKNINIIYC---DCR-DLKKLLTILVGRGVTSLLVEG 294
            L+     +  +  P V  LA  ++ ++++ C   D + DL  +L  L  R +  L VE 
Sbjct: 249 RLVYTASALARHAAPKVRELA--EQGVSVLACANADGKVDLGAMLDDLARREINELHVEA 306

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG------GIPSPLEEGYLEKNFMCVRRDYFGS 348
           G+ ++ SF+ + LVD  ++Y + +++G G      G  + L EG L   F+ V R   G+
Sbjct: 307 GSKLSGSFVRAGLVDEFLVYLAPLMLGAGREMARFGPLTALTEG-LALEFVSVER--VGA 363

Query: 349 DVCL 352
           D+ L
Sbjct: 364 DLRL 367


>gi|332157888|ref|YP_004423167.1| Riboflavin biosynthesis protein ribD (ribD) [Pyrococcus sp. NA2]
 gi|331033351|gb|AEC51163.1| Riboflavin biosynthesis protein ribD (ribD) [Pyrococcus sp. NA2]
          Length = 349

 Score =  169 bits (428), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 116/328 (35%), Positives = 172/328 (52%), Gaps = 21/328 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D ++M  AL  +R   G  + NP V  +IVK+G VIG+G   Y G  HAEV A+E+A   
Sbjct: 4   DEKYMKLALELARLGEGRVNPNPMVGAVIVKNGKVIGKGHHEYFGGKHAEVNAIEDAKRN 63

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G   RGAT YVTLEPC+H+G+ PPC   II+ GI RVVV   DP+  V+G G++ L + G
Sbjct: 64  GYSVRGATMYVTLEPCAHWGKQPPCVDRIIKEGISRVVVATLDPNPMVNGEGVKRLMEAG 123

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V+  +++ E +     Y          + +K+A++ D  I      S  IT   ++ +
Sbjct: 124 IEVEVGILKEEAEKLNEIYFKYIKTSMPFVAIKLALTLDGFIATKSFSSKWITNEKARLK 183

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           V  +R +  AI+VG  TV  D+P L CR+NG ++   +++ILD H   + + K +     
Sbjct: 184 VQEIRRRFMAIMVGANTVTIDNPRLNCRVNGCRDK--VKVILDRH-GTTANRKDLNVFKE 240

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             VI+ TE+D         K   N         K++L IL   G+ S+L+EGG  +A  F
Sbjct: 241 GKVIVFTESD---------KSWDNAKVIKETSPKRILEILGKMGIDSVLIEGG-RIACQF 290

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLE 330
           +     D + L+    +IG G   SP E
Sbjct: 291 LP--FADKLYLFYGNKLIGNG--ISPFE 314


>gi|85710330|ref|ZP_01041395.1| riboflavin-specific deaminase/reductase [Erythrobacter sp. NAP1]
 gi|85689040|gb|EAQ29044.1| riboflavin-specific deaminase/reductase [Erythrobacter sp. NAP1]
          Length = 315

 Score =  169 bits (428), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 117/298 (39%), Positives = 148/298 (49%), Gaps = 41/298 (13%)

Query: 28  NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE-ARGATAYVTLEPCSHYG-RS 85
           NP VA L+V+   VI RG T  GG PHAE  AL    E  A+GAT YVTLEPC+H   R 
Sbjct: 18  NPGVAALLVQGNCVIARGWTQGGGRPHAEAIALAGIAEGGAKGATLYVTLEPCAHQSQRG 77

Query: 86  PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQ 145
           P C   +I     RVV+   DPD R +G G + + + GI V  + +   +  L  YLTR 
Sbjct: 78  PACTDLVIAARPSRVVIGQLDPDPRTAGLGAKRIQRAGIAVTVLDDDVARASLAGYLTRA 137

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
              R H+TLK+A+S D  I +A   S  ITG  ++  VH  RAQ DAILVG GT  AD P
Sbjct: 138 ALGRPHVTLKLAMSLDGAIALASGASQWITGEAARAHVHSRRAQHDAILVGGGTWRADKP 197

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
            L  RL GL+  SP R++L              T  +AP  +   N+             
Sbjct: 198 RLDVRLPGLEARSPDRVLL--------------TRGVAPDGVTVINE-----------PA 232

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            I   D              GV  L VEGGA  A SF+   +VD + +YR+ I+IG G
Sbjct: 233 QIAALD--------------GVQYLYVEGGAGAAASFLAEDMVDELHIYRAPILIGSG 276


>gi|291518541|emb|CBK73762.1| riboflavin biosynthesis protein RibD [Butyrivibrio fibrisolvens
           16/4]
          Length = 257

 Score =  169 bits (428), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 98/251 (39%), Positives = 140/251 (55%), Gaps = 5/251 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE---EA 63
           D  +M  AL  ++   G  + NP V  +IVKDG++IG G     G  HAE  AL+   E 
Sbjct: 3   DKTYMLRALELAKLGAGFVNPNPMVGAVIVKDGVIIGEGYHEKYGQLHAERNALKDCRER 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G +  GAT YVTLEPC HYG++PPC + I+E  I RVV+   D +  V+G+G   L + G
Sbjct: 63  GNDPAGATMYVTLEPCCHYGKTPPCTEAIVESRINRVVIGTLDVNPVVAGKGADILREHG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V+  ++E E K     +    + KR ++ +K A++ D  I      S  IT   ++  
Sbjct: 123 IRVEVGLLEKECKKLNRVFNKYMLSKRPYVVMKYAMTADGKIATVTGESKWITSDEAREN 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LR     I+VG+ TV+ D+P L CRL+     +P+RII D H +  LDSK+++TA  
Sbjct: 183 VHRLRKNLSGIMVGVTTVITDNPSLDCRLDE-PAVNPVRIICDSHLRTPLDSKVVETAGG 241

Query: 243 APVIIVTENDD 253
              II T +DD
Sbjct: 242 IKTIIATSSDD 252


>gi|254173530|ref|ZP_04880202.1| riboflavin biosynthesis protein RibD [Thermococcus sp. AM4]
 gi|214032222|gb|EEB73052.1| riboflavin biosynthesis protein RibD [Thermococcus sp. AM4]
          Length = 360

 Score =  169 bits (427), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 121/331 (36%), Positives = 177/331 (53%), Gaps = 20/331 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +SS D RFM  AL  ++   G  + NP V  +IVKDG VIG G     G  HAEV A+E+
Sbjct: 1   MSSEDERFMRLALELAKRGEGWVNPNPMVGAVIVKDGEVIGVGWHRRFGEKHAEVNAIED 60

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + RGAT YVTLEPCSH+G+ PPCA  II+ G +RVVV + DP+  VSGRG++ +
Sbjct: 61  AKSRGHDVRGATMYVTLEPCSHWGKQPPCADRIIKEGFKRVVVAMVDPNPLVSGRGIEKM 120

Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            + GI V+  ++E E +     ++     K   +++K+A++ D  I      S  ITG  
Sbjct: 121 RKAGIEVEVGVLEDEARRLNEIFIKYVTTKMPFVSIKLALTLDGFIATETGSSQWITGEK 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++ +V  LR +  AI+VG GTVLAD+P L CRL    E   +++ILD   +++   +  +
Sbjct: 181 ARLKVQELRRRHMAIMVGAGTVLADNPRLNCRLENCPEK--VKVILDRSGRVAEAIRSGR 238

Query: 239 TALL---APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
              L     VI  TE  +    +A        I      L+KL  +    G+ S+L+EGG
Sbjct: 239 KFRLFEDGRVIFFTERPELFEGIA----EAYPITGPEEILRKLGEL----GIDSVLIEGG 290

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
             +A  F++    D   L+    + G G  P
Sbjct: 291 -RIACQFLS--YADKFYLFYGPKLFGRGIKP 318


>gi|90415720|ref|ZP_01223654.1| riboflavin biosynthesis protein [marine gamma proteobacterium
           HTCC2207]
 gi|90333043|gb|EAS48213.1| riboflavin biosynthesis protein [marine gamma proteobacterium
           HTCC2207]
          Length = 373

 Score =  169 bits (427), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 113/337 (33%), Positives = 173/337 (51%), Gaps = 12/337 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S  D  +MS AL  +      TS NPSV C++V DG ++G G T   G  HAEV+AL
Sbjct: 1   MAYSVDDREYMSRALELAAKGRFTTSPNPSVGCVLVVDGAIVGEGHTRPAGGNHAEVEAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             A      ATAYVTLEPCSH G++ PC + +I+ GI RVV+  +DP+ +V+G G++ L 
Sbjct: 61  NAAASAKG-ATAYVTLEPCSHSGKTGPCVEVLIDAGISRVVIACEDPNPKVAGEGIKLLQ 119

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   + E + +     ++ R  +    + +K+A S D    MA   S  IT   S
Sbjct: 120 DAGIEVACGLYEDQARELNKGFIKRHEQGLPWVVVKMAASLDGRTAMASGQSQWITTPAS 179

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLN----GLQE--HSPMRIILDPHFKLSLD 233
           +  V  LRA + AI+ GIGT L DDP LT R+     G+ +    P+R+++D   ++S +
Sbjct: 180 RKDVQRLRAANCAIITGIGTQLMDDPSLTVRITNDDLGVTDSLRQPLRVVVDSKLQMSPE 239

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTS 289
           +++        +  +   +    AL        +++   R    DL +LL  L  R   S
Sbjct: 240 ARMFAQPGDTLIATMDGPEQRERALPLEAAGAAVVFLPARDGHVDLHELLLELARRECNS 299

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           ++VE GA +A  F+   L+D ++ Y +  + G    P
Sbjct: 300 VMVEAGAGLAGGFVAEGLLDELVCYWAPKLFGSDARP 336


>gi|87161517|ref|YP_494408.1| riboflavin biosynthesis protein [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195585|ref|YP_500391.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|87127491|gb|ABD22005.1| riboflavin biosynthesis protein [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87203143|gb|ABD30953.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus NCTC 8325]
          Length = 334

 Score =  169 bits (427), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 105/302 (34%), Positives = 153/302 (50%), Gaps = 9/302 (2%)

Query: 23  GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
           G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A GAT Y+TLEPCSH+
Sbjct: 4   GQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAEGATIYITLEPCSHF 63

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
           G +PPC   II+C I +VV    D  +   G   + L   GI V+ + +         + 
Sbjct: 64  GSTPPCVNKIIDCKIAKVVYATKDNSLDTHGD--ETLRAHGIEVECVDDERASQLYQDFF 121

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
             + ++   IT+K++ S D         S  IT    K  V+ LR + DA+L G  TV  
Sbjct: 122 KAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRHDAVLTGRRTVEL 181

Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
           DDP+ T R+   +  +P+++IL     +  + +I +     P+ I TEN +    L   +
Sbjct: 182 DDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWIYTENPN----LTTNQ 234

Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
            +I IIY    DL  +L  L  RGV +LLVE G      F+ S  +D  ILY +  +IG 
Sbjct: 235 THIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDEFILYYAPKLIGG 294

Query: 323 GG 324
            G
Sbjct: 295 SG 296


>gi|94984408|ref|YP_603772.1| riboflavin biosynthesis protein RibD [Deinococcus geothermalis DSM
           11300]
 gi|94554689|gb|ABF44603.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Deinococcus
           geothermalis DSM 11300]
          Length = 383

 Score =  169 bits (427), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 117/325 (36%), Positives = 177/325 (54%), Gaps = 12/325 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           +P  + DA  M  AL  + + +G T+ NP V C+IV+ G V+GRG     G PHAEV AL
Sbjct: 20  VPGEAADAALMDQALAQAAYGLGRTAPNPPVGCVIVRGGEVVGRGFHPRAGEPHAEVFAL 79

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAGE ARGATAYVTLEPCSH+GR+PPCA  +I  G+ RVVV   DP+ +V+GRG++ L 
Sbjct: 80  REAGERARGATAYVTLEPCSHFGRTPPCADALIRAGVARVVVAALDPNPQVAGRGVERLR 139

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             G+ V   +  E  +   A     V + R  +  K A++ D  +   G G+  +T   +
Sbjct: 140 AAGLHVTVGVGEEAALRQQAGFRSLVARGRPWVVYKYAMTLDGKVAAPGEGNGAVTSAPA 199

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           + +V   R + DA+ VG GT+LADDP LT R + G ++  P  ++ D   +  + ++ ++
Sbjct: 200 RARVMRWRNELDAVAVGSGTLLADDPALTTRGVPGGRDPRP--VLFDRRARTPVAARALR 257

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
              +  V+   E +   L  A       I+  D   L + L  L    ++SLL+EGG  +
Sbjct: 258 PGTI--VVTAPETNTDHLEAA----GAVILRADS--LPEALHGLGELNISSLLLEGGPRL 309

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323
           A +F    L+D +    +  ++G G
Sbjct: 310 ASAFFADGLIDEVRALIAPRLLGAG 334


>gi|330443905|ref|YP_004376891.1| riboflavin biosynthesis protein RibD [Chlamydophila pecorum E58]
 gi|328807015|gb|AEB41188.1| riboflavin biosynthesis protein RibD [Chlamydophila pecorum E58]
          Length = 372

 Score =  169 bits (427), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 109/325 (33%), Positives = 166/325 (51%), Gaps = 10/325 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  A+         T  NP V C++VK+G ++  G   Y G PHAE  A+ +A     G
Sbjct: 11  FMRRAIEIGERGRITTPPNPWVGCVLVKNGKILSEGYHEYPGGPHAEEIAIRKAHVSLEG 70

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           A  Y++LEPCSHYG+ PPC   +I+  +  V + + DPD RVSG+G++ L   GI V   
Sbjct: 71  AQVYLSLEPCSHYGKQPPCTDLLIKHRVAEVFIALKDPDCRVSGKGIESLKNVGIRVHVG 130

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + E+  +  L  YL ++      + LK A S D  +      S  IT   +++ V  +RA
Sbjct: 131 LEEARARKSLQPYLYQRSSCSPWVVLKSAASIDGQVADRNSQSQWITCPEARHDVGFIRA 190

Query: 189 QSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
            S A++VG GTV+AD+P+LT R     L    P+RI+LD   ++  +S++    L   V+
Sbjct: 191 CSQAVIVGAGTVIADNPKLTARRASGELYARQPLRIVLDSSGRVPKESQVFH--LGGEVL 248

Query: 247 IVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            VT    P   L + +     I C        DL +++ +L  +    +LVEGGA V   
Sbjct: 249 YVTTKRCPSQHLQYLEALGVEIACVKASSSGVDLHEVMRLLANKHFLQVLVEGGATVHTE 308

Query: 302 FINSRLVDSIILYRSQIVIGEGGIP 326
           F+   L ++IILY    ++G+   P
Sbjct: 309 FLKHHLANAIILYYGPKILGDQKKP 333


>gi|320335323|ref|YP_004172034.1| riboflavin biosynthesis protein RibD [Deinococcus maricopensis DSM
           21211]
 gi|319756612|gb|ADV68369.1| riboflavin biosynthesis protein RibD [Deinococcus maricopensis DSM
           21211]
          Length = 353

 Score =  169 bits (427), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 123/348 (35%), Positives = 183/348 (52%), Gaps = 16/348 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  AL+ +   +G T+ NP V C+IV  G V+GRG     G  HAEV AL++AG  ARG
Sbjct: 3   FMHQALQQAALGLGRTAPNPPVGCVIVAGGEVVGRGFHPRAGQGHAEVFALQDAGVRARG 62

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           ATAYVTLEPCSH GR+PPCA  +I  G+ RVVV   DP+  V+GRG+  L   G+ V   
Sbjct: 63  ATAYVTLEPCSHTGRTPPCADALIRAGVARVVVAALDPNPVVAGRGVARLRTHGLDVHVG 122

Query: 130 MESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
             ++  +   A     + + R  +  K A + D  I       +P++G  ++  VH  R 
Sbjct: 123 PLADAAVRQQAGFRSLITRGRPWVVYKYAATLDGKISADDARPLPVSGPDARALVHTWRN 182

Query: 189 QSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           + DAI VG+GTVLADDP LT R + G ++  P  I+ D H +    ++ ++       ++
Sbjct: 183 EFDAIAVGVGTVLADDPHLTTRGVPGGRD--PRPIVFDRHARTPTTARALRPG----TVL 236

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
           VT  D      A      +++      L + L  L   GVTSLL+EGGA +A +   + L
Sbjct: 237 VTGPD--ARTDAHEAAGAHVLRAPT--LHEALQGLGALGVTSLLLEGGARLASALYAADL 292

Query: 308 VDSIILYRSQIVIGEG--GIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           +D +  + +  ++G G   + SP    +  +    V+    G+DV +E
Sbjct: 293 IDEVRAFIAPTLLGAGLPALTSP--AAHAPRALHDVQATRVGTDVLIE 338


>gi|88811147|ref|ZP_01126403.1| riboflavin biosynthesis protein RibD [Nitrococcus mobilis Nb-231]
 gi|88791686|gb|EAR22797.1| riboflavin biosynthesis protein RibD [Nitrococcus mobilis Nb-231]
          Length = 376

 Score =  169 bits (427), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 175/329 (53%), Gaps = 6/329 (1%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D ++M+ ALR ++  +  T  NP V C+IV++G ++G G     G PHAE+ AL  A
Sbjct: 11  TAADRQYMAHALRLAKRGLFSTGPNPRVGCVIVRNGQLVGEGWHRRAGEPHAEINALAAA 70

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G+ ARGA  YVTLEPC H+GR+PPC   ++  GI RV+    DP+ RV+G+GL+ L+  G
Sbjct: 71  GQAARGAILYVTLEPCCHHGRTPPCTTALLSAGITRVIAACKDPNPRVAGQGLEQLTAAG 130

Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I     +M  + +     +  R      ++  K+A+S D    MA   S  IT   ++  
Sbjct: 131 ITTRHGLMAEQAQTLNPGFFKRMRTGLPYVRCKLAMSLDGRTAMASGESRWITAAAARGD 190

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
           VH LRA+SD +L G GTVLADDP+LT R          P R++LD   ++   +++++  
Sbjct: 191 VHRLRARSDGLLTGHGTVLADDPQLTARDVDTSWDLVQPCRLVLDSRLRIPKQARMLQEP 250

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAA 297
               V+    +      L      +  I  D     +L++ LT +    +  LLVE G  
Sbjct: 251 GKVAVLYAHHDRRRAQDLTAAGAELWPIEPDSDGRVELRQALTAIGNAEINELLVEAGPT 310

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           ++ + + + L+D +++Y +  ++G+   P
Sbjct: 311 LSGALLQADLIDELVVYIAPHLMGDEARP 339


>gi|312797040|ref|YP_004029962.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Burkholderia rhizoxinica HKI 454]
 gi|312168815|emb|CBW75818.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26)
           / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC
           1.1.1.193) [Burkholderia rhizoxinica HKI 454]
          Length = 382

 Score =  169 bits (427), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 118/336 (35%), Positives = 172/336 (51%), Gaps = 29/336 (8%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S FD   M  AL  +   +  TS NP V C++VKDG VIG G T   G  HAE+ AL++A
Sbjct: 3   SDFDRLQMQRALVLAERGLYTTSPNPRVGCVLVKDGEVIGEGFTQPAGQDHAEICALKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G    GATAYVTLEPCSH+GR+PPCA  +IE GI RV+  ++DP+ +VSGRGL  L 
Sbjct: 63  RLRGHTPAGATAYVTLEPCSHFGRTPPCANTLIEAGITRVIAAMEDPNPQVSGRGLASLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             G+ V   ++  E +     +++R       + LKIA + D    +    S  IT   +
Sbjct: 123 DAGVDVRCGLLAHEAQELNVGFVSRMTRGVPWVRLKIAATLDGRTALPNGQSQWITSSAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H  RA++ A L GIGTV  DDP++T R        P+R+++D    + LD++I+  
Sbjct: 183 RTDGHAWRARACATLTGIGTVREDDPQMTVRAVSTPRQ-PLRVLVDSCLDVPLDARILTG 241

Query: 240 ALLAPVII--------------VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285
           A   P++I              +      V+AL  +   +        DL   L +L  R
Sbjct: 242 A--PPLVICARDDAAFAARAHALRAAGAEVIALPNQSGKV--------DLPAALRLLAAR 291

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           G+  L VE G  +  S +    VD ++LY +  ++G
Sbjct: 292 GINELHVEAGYKLNGSLLREGCVDELLLYIAPALLG 327


>gi|326561735|gb|EGE12070.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis 7169]
 gi|326569043|gb|EGE19112.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis BC1]
          Length = 350

 Score =  168 bits (426), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 126/366 (34%), Positives = 186/366 (50%), Gaps = 47/366 (12%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D  +M  A+  ++  +  T  NP+V C++VKD +VIG+G     G PHAE+ AL +A   
Sbjct: 10  DIYYMQLAIAAAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKAQ 69

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G + +GATAYVTLEPCSH GR+PPCA  +I   +RRVVV   DP+ +V+G G++ L   G
Sbjct: 70  GFDTKGATAYVTLEPCSHTGRTPPCADALIAANLRRVVVASLDPNPKVAGNGIKKLQNAG 129

Query: 124 I-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
           I     + D+   +    FL A  T       ++ LK A S D     A   S  ITG  
Sbjct: 130 IEVLVGVCDQQAAALNLGFLKAMRT----GLPYVRLKTASSLDGRTATASGESKWITGIE 185

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEH---SPMRIILDPHFKLS-L 232
           ++  V  LRA+S AI+ G GT++AD+P LT R    G+  H    P  +I+D   +LS L
Sbjct: 186 AREDVQRLRAKSAAIVTGSGTIIADNPALTVRSKQLGVDLHMIPKPKVVIVDRRNRLSDL 245

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLL 291
           D              V  +D+    L +R            DL  LL  LV +     +L
Sbjct: 246 DD-----------YQVLNHDN---TLIWRN-----------DLMSLLKTLVSQYACYDVL 280

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGS 348
           +E G+ ++ +FI   LVD +I+Y++  ++G+   P     L++   +  F     D  G+
Sbjct: 281 IEAGSELSGAFITEGLVDELIVYQAPCILGQDARPMFACQLDQLVQQYRFGLHSADIIGN 340

Query: 349 DVCLEY 354
           D+ L Y
Sbjct: 341 DIRLIY 346


>gi|270263547|ref|ZP_06191816.1| hypothetical protein SOD_e01710 [Serratia odorifera 4Rx13]
 gi|270042431|gb|EFA15526.1| hypothetical protein SOD_e01710 [Serratia odorifera 4Rx13]
          Length = 369

 Score =  168 bits (426), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 127/334 (38%), Positives = 178/334 (53%), Gaps = 22/334 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     T+ NP+V C+IV+DG ++G G     G PHAEV AL  AG  
Sbjct: 4   DEFYMARAFELARLGRFTTAPNPNVGCVIVRDGEIVGEGYHLRAGEPHAEVHALRMAGAR 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q GI V
Sbjct: 64  ARGATAYVTLEPCSHHGRTPPCADALVAAGVARVVAAMQDPNPEVAGRGLYKLQQAGIDV 123

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M S+ +     +L R      ++ LK+  S D    MA   S  IT   ++  V  
Sbjct: 124 RHGLMLSDAEAVNPGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L               P+RIILD   +++   
Sbjct: 184 LRAQSAAILSTSATVLADDPSLTVRWDELDTATQSLYPRENLRQPLRIILDSQNRVTPQH 243

Query: 235 KIIK---TALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           ++++   T  LA +    +N    V  L F      +      DL  ++  L  R V S+
Sbjct: 244 RVVQQPGTTWLARLQPDDQNWPQEVEQLTFPAHGGGV------DLVVMMMQLAKRQVNSI 297

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            VE GAA++ + + + LVD +ILY +  ++G+ G
Sbjct: 298 WVEAGAALSGALLQAGLVDELILYIAPKLMGDNG 331


>gi|291545679|emb|CBL18787.1| riboflavin biosynthesis protein RibD [Ruminococcus sp. SR1/5]
          Length = 253

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/239 (39%), Positives = 140/239 (58%), Gaps = 11/239 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A++ ++   G T+ NP V  +IVKDG +IG G     G  HAE  A+    E 
Sbjct: 3   DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGRIIGEGYHKKYGELHAERNAIASLTEP 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GA  YVTLEPC H+G++PPC + IIE  IR+VV+   DP+ +V+G+G+Q L + G+ +
Sbjct: 63  AEGAVIYVTLEPCCHHGKTPPCTETIIEQKIRKVVIGSRDPNPKVAGKGVQMLREAGVTV 122

Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           V+  M  E      +F H Y+T    K  ++ +K A++ D  I      S  ITG  ++ 
Sbjct: 123 VEDFMREECDQLNPVFFH-YIT---TKTPYVVMKYAMTLDGKIATKTGASKWITGEAARK 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
           +V  +R Q   I+ GIGTVLADDP L  R+ G +  SP+RI+ D   ++  DS+I+K+A
Sbjct: 179 EVQHMRHQYMGIMAGIGTVLADDPMLNVRVEGWK--SPVRIVCDSKLRIPPDSQIVKSA 235


>gi|325109372|ref|YP_004270440.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Planctomyces brasiliensis DSM 5305]
 gi|324969640|gb|ADY60418.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Planctomyces brasiliensis DSM 5305]
          Length = 377

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 106/320 (33%), Positives = 170/320 (53%), Gaps = 11/320 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  AL  +R   G    NP V  ++V + + +I  G     G PHAEVQAL  AG+ ARG
Sbjct: 12  MQRALELARQGEGFVEPNPCVGAVVVDENLQLIAEGYHEQYGGPHAEVQALRNAGDRARG 71

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           A  +VTLEPC+H+G++PPC++ +I+ GI RV +   DP      +G + L + G+ V+  
Sbjct: 72  AWIFVTLEPCNHHGKTPPCSEAVIQAGIERVFIGCLDPAAHEKRQGAERLREAGLQVEVG 131

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + + E +  L  +       + ++  K A++ D  I      S  I+G  S+  VH LR 
Sbjct: 132 LCQQEAERLLRPFTKLMTTGQPYVHAKWAMTLDGKIATRTGSSQWISGPESRAVVHKLRG 191

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT-ALLAPVII 247
           + DAIL G GTVLAD+P+LT R  G    +P+R+++D   +L L S++++T +   PV++
Sbjct: 192 RCDAILTGRGTVLADNPQLTARPPG--PRTPLRVVVDSQAQLPLTSQLVQTCSSDQPVLL 249

Query: 248 V-TENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
             T   D       ++  + +            L  LLT L  R VT+L +E G  +  S
Sbjct: 250 ACTARADAEKVRQLQQLGVEVQQFSASPEGRPQLAALLTELGKRKVTNLFLECGGELLGS 309

Query: 302 FINSRLVDSIILYRSQIVIG 321
           F++ RL+D + ++    ++G
Sbjct: 310 FLDQRLIDEVHVFLGPKLVG 329


>gi|188589601|ref|YP_001920640.1| riboflavin biosynthesis protein RibD [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188499882|gb|ACD53018.1| riboflavin biosynthesis protein RibD [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 366

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/322 (34%), Positives = 174/322 (54%), Gaps = 9/322 (2%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            + ++M  AL  ++   G  + NP V  LIVKD  +IG G     G  HAEV A+  A +
Sbjct: 4   LNEKYMELALELAKKGEGKVNPNPLVGALIVKDNEIIGSGYHEKYGEAHAEVNAINNATK 63

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
              G+T YVTLEPCSHYG++PPC   IIE  I++V++ + DP+  VSGR ++ L    I 
Sbjct: 64  SLDGSTIYVTLEPCSHYGKTPPCVDLIIEKKIKKVIIGMLDPNPMVSGRSIKKLKDNDIE 123

Query: 126 VDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   +E E  K    +++         + LK A+S D  I  +   S  IT   S+   H
Sbjct: 124 VIVGVEEEKCKKINESFIKYITSNLPFVILKSAISLDGKIATSIGESKWITSEESRRDGH 183

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           LLR +  AI+VGI T++ D+PELTCR+ NG    +P+R+I+D + ++ L SK++  +   
Sbjct: 184 LLRNKLSAIMVGINTIIEDNPELTCRIENG---KNPIRVIVDSNLRIPLKSKVVNNSDKL 240

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299
            ++  T+  D +       K + +I  + +    DLK+L+  L    + S+L+EGG  + 
Sbjct: 241 TIVATTKYADKLKKQELINKGVRVIEINDKNKKVDLKELMRCLGTLKIDSILIEGGGTLN 300

Query: 300 HSFINSRLVDSIILYRSQIVIG 321
            S +   +VD +  Y +  ++G
Sbjct: 301 FSALEENIVDKVRFYIAPKILG 322


>gi|332878860|ref|ZP_08446575.1| riboflavin biosynthesis protein RibD [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332683211|gb|EGJ56093.1| riboflavin biosynthesis protein RibD [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 350

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 109/323 (33%), Positives = 167/323 (51%), Gaps = 10/323 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D +++   ++ ++  +G T  NP V  +IV +  VIG G     G  HAEV+A+    ++
Sbjct: 3   DQQYIHRCIQLAQNGLGTTYPNPVVGSVIVYNDRVIGEGWHVRAGEAHAEVRAIASVKDK 62

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                +T YV+LEPCSHYG++PPCA  II   I RVV+   DP  +V+GRG+Q L + G 
Sbjct: 63  QLLSESTLYVSLEPCSHYGKTPPCADLIIAHRIPRVVIGCTDPFAKVAGRGIQKLREAGC 122

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP---ITGFISK 180
            +V  + + E +     + T   +KR +I LK A ++D +I       +    ITG  ++
Sbjct: 123 EVVVGVCQEECEALNKRFFTFHQKKRPYIFLKWAETRDGLIAPLHKQEIAPQWITGAYAR 182

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             VHLLR+   AILVG GTV AD+P L+ R       SP+R+I+DP      D  +    
Sbjct: 183 QYVHLLRSTEAAILVGAGTVWADNPSLSTR--SWYGKSPLRVIIDPRLSTRKDFNVWNDE 240

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
           +  P + + + D   +    ++  +  I      L +L  +L  R V SL+VEGGA    
Sbjct: 241 V--PTLFIADRDYKGVRHFGQRTEVACIDFGGEVLPQLCKVLYEREVQSLIVEGGAHTLQ 298

Query: 301 SFINSRLVDSIILYRSQIVIGEG 323
            FI + L D  +++R   V   G
Sbjct: 299 QFIKADLWDEALVFRGDTVFTNG 321


>gi|326562323|gb|EGE12649.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis
           103P14B1]
 gi|326575527|gb|EGE25452.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis
           101P30B1]
          Length = 350

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 127/366 (34%), Positives = 184/366 (50%), Gaps = 47/366 (12%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D  +M  A+  ++  +  T  NP+V C++VKD +VIG+G     G PHAE+ AL +A   
Sbjct: 10  DIYYMQLAIAEAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKAR 69

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G + +GATAYVTLEPCSH GR+PPCA  +I   +RRVVV   DP+ +V+G G++ L   G
Sbjct: 70  GFDTKGATAYVTLEPCSHTGRTPPCADALIAANLRRVVVASLDPNPKVAGNGIKKLQNAG 129

Query: 124 I-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
           I     + D+   +    FL A  T       ++ LK A S D     A   S  ITG  
Sbjct: 130 IEVLVGVCDQQAAALNLGFLKAMRT----GLPYVRLKTASSLDGRTATASGESKWITGIE 185

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEH---SPMRIILDPHFKLS-L 232
           ++  V  LRA+S AI+ G GT++AD+P LT R    G+  H    P  +I+D   +LS L
Sbjct: 186 AREDVQRLRAKSAAIVTGSGTIIADNPALTVRSKQLGVDLHMLPKPKVVIVDRRNRLSDL 245

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLL 291
           D              V   DD    L +R            DL  LL  LV +     +L
Sbjct: 246 DD-----------YQVLNRDD---TLIWRN-----------DLMSLLKTLVSQYACYDVL 280

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGS 348
           +E G+ ++ +FI   LVD +I+Y++  ++G+   P     L+    +  F     D  G+
Sbjct: 281 IEAGSELSGTFITEGLVDELIVYQAPCILGQDARPMFACQLDHLAKQYRFGLHSADIIGN 340

Query: 349 DVCLEY 354
           D+ L Y
Sbjct: 341 DIRLIY 346


>gi|301335276|ref|ZP_07223520.1| riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis L2tet1]
          Length = 375

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 109/322 (33%), Positives = 161/322 (50%), Gaps = 5/322 (1%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  A+            NP V C+IVK+G VIG G     G PHAEV A+++      G
Sbjct: 11  FMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQDQKCSLEG 70

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           A  YVTLEPC H+GR+PPC   +I+  +  V V + DPD RV  +G+  L   GI V   
Sbjct: 71  AEVYVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAAGIPVYVG 130

Query: 130 MES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + S E K  L  YL ++      + +K A S D      G  S  I+G +++  V  LRA
Sbjct: 131 VGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARADVGKLRA 190

Query: 189 QSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           +S AI+VG  TV  D+P L+ R     L E  P+R+++D    + L+S++   +  + + 
Sbjct: 191 ESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDLSSGSTLF 250

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
             T+          +   + +        DLK LL  LV RG   +LVEGGA +  +F  
Sbjct: 251 ATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLVERGCLQVLVEGGAQLHSAFWQ 310

Query: 305 SRLVDSIILYRSQIVIGEGGIP 326
            +LV++ ++Y     +G+ G P
Sbjct: 311 QKLVNAGVIYWGPKFLGDQGQP 332


>gi|227537349|ref|ZP_03967398.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242852|gb|EEI92867.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 350

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/351 (30%), Positives = 174/351 (49%), Gaps = 17/351 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           +   R+M   L  +    G  S NP V  +IV +  +IG G T+  G PHAEV A+++  
Sbjct: 2   NMQERYMQRCLELALLGAGTVSPNPMVGAVIVHENKIIGEGYTSPYGGPHAEVNAIQQVK 61

Query: 65  EEARGAT--------AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           ++   +          YV+LEPC+H+G++PPCA  I++  +R+V +   DP  +V+G+GL
Sbjct: 62  DQYPDSADRLLAESDMYVSLEPCAHFGKTPPCANLIVKHNLRKVYIACMDPFAQVNGKGL 121

Query: 117 QWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
             L Q GI V+  ++E E       + TR  + R ++ LK A + D  +         I+
Sbjct: 122 GILQQAGIEVEVGLLEKEALWLNRRFFTRVRQNRPYVILKWAETADGYMAKNTDEQAWIS 181

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
              SK  VH  R++ DAILVG  T L D+P LT R    + ++P R+++D    +   + 
Sbjct: 182 NEASKQLVHRWRSEEDAILVGTRTALIDNPSLTVR--EWEGNNPKRVLIDKQLSVPESAA 239

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
           I        V    + D        R K I +   D    + +L  L    + S+++EGG
Sbjct: 240 IFSEDADTIVFNAVKTD-----WQGRIKYIELENYDLYLPQNILYQLYLMDIQSIIIEGG 294

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
           A     FI++ L D   + RS+ V+ EGGI +P+ EG L++       D++
Sbjct: 295 AKTLQLFIDAGLWDEARVIRSK-VLWEGGIKAPVVEGELKEQQAVASDDFY 344


>gi|332141886|ref|YP_004427624.1| Riboflavin biosynthesis protein RibD [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327551908|gb|AEA98626.1| Riboflavin biosynthesis protein RibD [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 379

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/337 (32%), Positives = 171/337 (50%), Gaps = 26/337 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAG- 64
           D  +M+ A++ +      TS NP V C+IV +D  ++G+G     G PHAEV AL +A  
Sbjct: 9   DYYWMAKAIQLANKGRFTTSPNPRVGCVIVDEDSQLLGQGYHIQAGTPHAEVHALRQAAH 68

Query: 65  ---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
              E A+GATAYVTLEPCSH+GR+PPCA+ ++E  + RVV+ + DP+  V G G+  L +
Sbjct: 69  ARSEGAKGATAYVTLEPCSHFGRTPPCAKALVEAQVARVVIAMTDPNPNVCGNGISMLQE 128

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +V  +M +E       ++ R +  +  + +K+ +S D  I +    S  IT   ++
Sbjct: 129 AGIEVVSEVMAAEAAALNPGFIKRMLTGKPFVRVKLGISVDGKIALQNGVSQWITTPEAR 188

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ------EH--SPMRIILDPHFKLSL 232
             V   RAQS  +L G GTV AD+P L  R    Q      EH   P R+++D    LS 
Sbjct: 189 RDVQHYRAQSCVVLTGSGTVKADNPSLLVRGKEAQFDDYPLEHVRQPARVVVDSKSTLSR 248

Query: 233 DSKIIKTALLAPVIIVTENDDPVLA----LAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           D  +     +      T    P  A    L   +K+  +      DL  L+  L  +   
Sbjct: 249 DFALFNDGNM--TFTATSQAHPDTASQHYLQLDEKDGKL------DLHALMLALGDKQFN 300

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
            + VE G  +A + +   LVD +I Y++  ++G+ G+
Sbjct: 301 EVWVEAGPGLAGALLQEGLVDELICYQAPKLLGDKGV 337


>gi|319401074|gb|EFV89293.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
           FRI909]
          Length = 347

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/317 (34%), Positives = 165/317 (52%), Gaps = 9/317 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           +RFM  A++ ++   G T  NP V  ++VK+G ++G G     G  HAEVQA+E AG  A
Sbjct: 2   SRFMDDAIQLAQMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLNA 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           +GAT YV+LEPC+H+G +PPC   IIE GI +V+  V   D  +  +G + L + GI V+
Sbjct: 62  QGATIYVSLEPCTHHGSTPPCVDKIIEAGISKVIYAV--KDTTLVSKGDEILREAGIEVE 119

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
                        + T +  +   +T+K++ S D         S  IT    K  V+ LR
Sbjct: 120 FQYNENAATLYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLR 179

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DA++ G  T+ AD+P  T R+   +   P+R+IL    +L  + +I K    + + I
Sbjct: 180 HEHDAVITGRRTIEADNPLYTTRVPDGKH--PIRVILSKTGQLDFNQQIFKDT-ASEIWI 236

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            TEN+      +F K  INI  CD      +L  L  RG+  LLVE G  +   F+ S+ 
Sbjct: 237 YTENEKLKTDKSFIKI-INISNCDT---ATILQDLYQRGIGKLLVEAGPNITSQFLQSKH 292

Query: 308 VDSIILYRSQIVIGEGG 324
           ++ +ILY +  +IG  G
Sbjct: 293 LNELILYIAPKLIGGSG 309


>gi|329735920|gb|EGG72197.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
           VCU045]
          Length = 347

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/317 (33%), Positives = 164/317 (51%), Gaps = 9/317 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           +RFM  A++ ++   G T  NP V  ++VK+G ++G G     G  HAEVQA+E AG   
Sbjct: 2   SRFMDDAIQLAKMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLNT 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           +GAT YV+LEPC+H+G +PPC   IIE GI +V+  V   D  +  +G + L + GI V+
Sbjct: 62  QGATIYVSLEPCTHHGSTPPCVHKIIEAGISKVIYAV--KDTTLVSKGDEILREAGIEVE 119

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
                        + T +  +   +T+K++ S D         S  IT    K  V+ LR
Sbjct: 120 FQYNENAAALYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLR 179

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DA++ G  T+ AD+P  T R+   +   P+R+IL    +L  + +I K    + + I
Sbjct: 180 HEHDAVITGRRTIEADNPLYTTRVPDGKH--PIRVILSKKGQLDFNQQIFKDT-ASEIWI 236

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            TEN+      +F K  INI  CD      +L  L  RG+  LLVE G  +   F+ S+ 
Sbjct: 237 YTENEKLKTNKSFIKI-INISNCDTT---TILQDLYQRGIGKLLVEAGPNITSQFLQSKH 292

Query: 308 VDSIILYRSQIVIGEGG 324
           ++ +ILY +  +IG  G
Sbjct: 293 LNELILYIAPKLIGGSG 309


>gi|87125464|ref|ZP_01081309.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           and5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Synechococcus sp. RS9917]
 gi|86166764|gb|EAQ68026.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           and5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Synechococcus sp. RS9917]
          Length = 369

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 116/299 (38%), Positives = 159/299 (53%), Gaps = 20/299 (6%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +M  AL+ +    G TS NP V  +++   G ++G G  A  G PHAEV AL +AGE AR
Sbjct: 9   WMRRALQLAALVEGQTSPNPLVGAVVLDAHGTLVGEGYHARAGKPHAEVGALVQAGEAAR 68

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           G T  VTLEPC H+GR+PPC + +I  GIRRVVV + DPD R++G GLQ L   G+ ++ 
Sbjct: 69  GGTLVVTLEPCCHHGRTPPCVEAVIAAGIRRVVVALTDPDPRMAGGGLQRLRDAGLEVIP 128

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++E+E      A++ R    R    LK A+S D    +    S  I+G  ++  VH LR
Sbjct: 129 GVLEAEAAHQNRAFVHRVKTGRPWGLLKWAMSLDGRTALPNGASQWISGAAARAWVHRLR 188

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA----LLA 243
           A  DA++VG GTV ADDP LT R  GL+   P+R++L     L   ++I  TA    LLA
Sbjct: 189 AHCDAVIVGGGTVRADDPLLTSR--GLRTPEPLRVVLSRSLDLPAAARIWTTAEAPTLLA 246

Query: 244 --PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK-----LLTILVGRGVTSLLVEGG 295
             P +   + +   L  A     +      C  LK+     LL  L  RG   +L E G
Sbjct: 247 HGPAVEAADAESSPLLEALGAAGVI-----CTALKRCEPLALLEQLASRGCNRVLWECG 300


>gi|239993720|ref|ZP_04714244.1| Riboflavin biosynthesis protein RibD [Alteromonas macleodii ATCC
           27126]
          Length = 379

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/337 (32%), Positives = 172/337 (51%), Gaps = 26/337 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAG- 64
           D  +M+ A++ ++     TS NP V C+IV ++  ++G+G     G PHAEV AL  A  
Sbjct: 9   DYFWMAKAIQLAQQGRFTTSPNPRVGCVIVDENNQLLGQGYHIQAGTPHAEVHALRHASN 68

Query: 65  ---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
              + A+GATAYVTLEPCSH+GR+PPCA  ++E  + RVV+ + DP+  V G G+  L +
Sbjct: 69  ARPQGAKGATAYVTLEPCSHFGRTPPCAVALVEAKVARVVIAMTDPNPNVCGNGISILQE 128

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +V  +M +E       ++ R +     + +K+ +S D  I +    S  ITG  ++
Sbjct: 129 AGIEVVSEVMAAEAAALNPGFIKRMLTGEPFVRVKLGISLDGKIALQNGVSQWITGAEAR 188

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ------EH--SPMRIILDPHFKLSL 232
             V   RAQS  +L G GTV AD+P L  R    Q      EH   P R+++D   KL+ 
Sbjct: 189 RDVQQYRAQSCVVLTGSGTVKADNPSLLVREQEAQFTNYPLEHIRQPARVVVDSKSKLTR 248

Query: 233 DSKIIKTALLAPVIIVTENDDPVLA----LAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           D  +     +      T    P  A    L   +K+  +      DL  L++ L  +   
Sbjct: 249 DYTLFNDGNI--TFTATSQAHPDTATQHYLQLDEKDGKL------DLHALMSALGDKQYN 300

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
            + VE G  +A + +   LVD +I Y++  ++G+ G+
Sbjct: 301 EVWVEAGPGLAGALLQEGLVDELICYQAPKLLGDKGV 337


>gi|27468359|ref|NP_764996.1| riboflavin specific deaminase [Staphylococcus epidermidis ATCC
           12228]
 gi|27315905|gb|AAO05040.1|AE016748_274 riboflavin specific deaminase [Staphylococcus epidermidis ATCC
           12228]
          Length = 347

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 106/317 (33%), Positives = 162/317 (51%), Gaps = 9/317 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           +RFM  A++ ++   G T  NP V  ++VK+G ++G G     G  HAEVQA+E AG   
Sbjct: 2   SRFMDDAIQLAKMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLNT 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           +GAT YV+LEPC+H+G +PPC   IIE GI +V+  V   D  +  +G + L + GI V+
Sbjct: 62  QGATIYVSLEPCTHHGSTPPCVHKIIEAGISKVIYAV--KDTTLVSKGDEILREAGIEVE 119

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
                        + T +  +   +T+K++ S D         S  IT    K  V+ LR
Sbjct: 120 FQYNENAAALYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLR 179

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DA++ G  T+ AD+P  T R+   +   P+R+IL    +L  + +I K    + + I
Sbjct: 180 HEHDAVITGRRTIEADNPLYTTRVPDGKH--PIRVILSKKGQLDFNQQIFKDT-ASEIWI 236

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            TEN+     L   K  I II     D   +L  L  RG+  LLVE G  +   F+ S+ 
Sbjct: 237 YTENE----KLKTNKSFIKIISISNCDTTTILQDLYQRGIGKLLVEAGPNITSQFLQSKH 292

Query: 308 VDSIILYRSQIVIGEGG 324
           ++ +ILY +  +IG  G
Sbjct: 293 LNELILYIAPKLIGGSG 309


>gi|57867218|ref|YP_188900.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
           RP62A]
 gi|57637876|gb|AAW54664.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
           RP62A]
          Length = 347

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/317 (33%), Positives = 164/317 (51%), Gaps = 9/317 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           +RFM  A++ ++   G T  NP V  ++VK+G ++G G     G  HAEVQA+E AG   
Sbjct: 2   SRFMDDAIQLAKMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLNT 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           +GAT YV+LEPC+H+G +PPC   IIE GI +V+  V   D  +  +G + L + GI V+
Sbjct: 62  QGATIYVSLEPCTHHGSTPPCVDKIIEAGISKVIYAV--KDTTLVSKGDEILREAGIEVE 119

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
                        + T +  +   +T+K++ S D         S  IT    K  V+ LR
Sbjct: 120 FQYNENAAALYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLR 179

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DA++ G  T+ AD+P  T R+   +   P+R+IL    +L  + +I K    + + I
Sbjct: 180 HEHDAVITGRRTIEADNPLYTTRVPDGKH--PIRVILSKKGQLDFNQQIFKDT-ASEIWI 236

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            TEN+      +F K  INI  CD      +L  L  RG+  LLVE G  +   F+ S+ 
Sbjct: 237 YTENEKLKTNKSFIKI-INISNCDTT---TILQDLYQRGIGKLLVEAGPNITSQFLQSKH 292

Query: 308 VDSIILYRSQIVIGEGG 324
           ++ +ILY +  +IG  G
Sbjct: 293 LNELILYIAPKLIGGSG 309


>gi|206602767|gb|EDZ39248.1| Riboflavin biosynthesis protein RibD [Leptospirillum sp. Group II
           '5-way CG']
          Length = 388

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 129/322 (40%), Positives = 177/322 (54%), Gaps = 10/322 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM+ AL  +       + NP V  ++V+ G V+GRG     G PHAEV AL EAGE ARG
Sbjct: 8   FMAMALDLAMMARDDVAPNPRVGAVVVRKGRVVGRGYHERPGLPHAEVLALREAGERARG 67

Query: 70  ATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           AT YV LEPC H   R+PPC + I+  GI RVV+ + DP+  V+G+G+  L   GI V+ 
Sbjct: 68  ATLYVNLEPCCHLNKRTPPCTREILSSGIGRVVISLSDPNPHVNGKGILELRDGGIPVET 127

Query: 129 -MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++  +       +L+     R  +TLK A S D  I  A   S  I+G  S    H LR
Sbjct: 128 GLLAPQAFAVNRGFLSLMKNGRPFVTLKGAASLDGQIATATGDSQWISGAPSLKYAHQLR 187

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
            + DAI+VG+GTVL D+P LT RL GL++ H P+RIILD   +   DS++ +T   +PV 
Sbjct: 188 QEHDAIVVGVGTVLKDNPLLTTRLPGLRKVHHPVRIILDSLGRTPPDSRLFETLSESPVW 247

Query: 247 IVTENDDPVLALA-FRKKNINIIYCDCRDLKK------LLTILVGRGVTSLLVEGGAAVA 299
           I+   + P   +A   +K            +K      LL  L+   + +LLVEGGA V 
Sbjct: 248 IMAGENAPEDRIARLEEKGARTFRLPAGPGEKGLRLSSLLAELLENRLLTLLVEGGAQVN 307

Query: 300 HSFINSRLVDSIILYRSQIVIG 321
            SF+  RLVDSI L  + ++IG
Sbjct: 308 GSFLQERLVDSIRLVLAPLLIG 329


>gi|171059615|ref|YP_001791964.1| riboflavin biosynthesis protein RibD [Leptothrix cholodnii SP-6]
 gi|170777060|gb|ACB35199.1| riboflavin biosynthesis protein RibD [Leptothrix cholodnii SP-6]
          Length = 416

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 114/334 (34%), Positives = 168/334 (50%), Gaps = 39/334 (11%)

Query: 23  GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE---EAGEEARGATAYVTLEP 78
           GLT  NP V C+IV   G ++G G T   G PHAEV A+     AG    GATAYVTLEP
Sbjct: 41  GLTEPNPRVGCVIVDAQGRLLGSGHTQQAGGPHAEVMAMRTARAAGHSLIGATAYVTLEP 100

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138
           C+H+GR+PPCA  +IE G++RVV  + DP   V+G+GL  L+  GI V++ + +E    +
Sbjct: 101 CAHHGRTPPCADALIEAGLKRVVAAITDPFPLVAGQGLARLAAAGIQVEQGLMAEAATAI 160

Query: 139 H-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
           +  + +R + +R  + +K+A S D    +    S  ITG  ++   H  R ++ A+L GI
Sbjct: 161 NIGFFSRVLRQRPWVRMKVAASLDGRTALMNGQSQWITGAAARADGHAWRRRASAVLTGI 220

Query: 198 GTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP---VIIVTENDDP 254
           GTVL DDP L  R +      PMR+++D   +  + ++     LLAP   V++ T  D+ 
Sbjct: 221 GTVLDDDPRLDVR-HVPTPRQPMRVVVDAPLRTPVTAR-----LLAPPGEVLVYTSADET 274

Query: 255 V---------------LALAFRKKNINIIYCDC----------RDLKKLLTILVGRGVTS 289
                            AL     ++      C           DL  +L  L  RGV  
Sbjct: 275 AQAAWLAEVQAAHGARAALGPDGTDVAPPLVQCVSMPGGPAGKVDLAAMLADLARRGVNE 334

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           L VE G  +  S +   LVD  ++Y +  ++G G
Sbjct: 335 LHVEAGHRLNGSLLREGLVDEFLVYLAPKLLGLG 368


>gi|254421232|ref|ZP_05034950.1| riboflavin biosynthesis protein RibD [Synechococcus sp. PCC 7335]
 gi|196188721|gb|EDX83685.1| riboflavin biosynthesis protein RibD [Synechococcus sp. PCC 7335]
          Length = 363

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 106/326 (32%), Positives = 168/326 (51%), Gaps = 4/326 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D   M      +    G T+ NP V  +I++DG ++G G     G PHAE+ AL  A + 
Sbjct: 11  DTDLMRRCCELAAQAAGHTAPNPLVGSIILRDGEIVGEGFHPKAGEPHAEIFALRAASDR 70

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YV LEPC+H G +PPC++ +I+ GIRRVV+ + DP+ +  G G++ L Q GI V
Sbjct: 71  AQGATLYVNLEPCNHKGLTPPCSEAVIKAGIRRVVIGMRDPNPKAKG-GIEKLRQAGIEV 129

Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +E +    L+ A++ R         LK A++ D  I      S  I+G  S+ +VH 
Sbjct: 130 VVGIEVDRCHQLNEAFIHRVTHNSPFGILKYAMTLDGKIATTAGHSAWISGPSSRQRVHQ 189

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR++ DA++VG  TV  D+P LT    G +  +P+R+++  H  L  D  + KT +   +
Sbjct: 190 LRSRCDAVIVGGNTVRQDNPNLTSHGEGTR--NPLRVVMSRHLDLPSDRNLWKTEVAPTL 247

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           +    N +     A  ++ + I+  +      ++  L  RG  S+L E G  +A   I +
Sbjct: 248 VFTQTNANLETKAALVRQGVEIVALESLTPAAVMAHLYQRGAMSVLWECGGVLAAKAIAA 307

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEE 331
             V  I  + +  +IG    PSP+ E
Sbjct: 308 GSVQKIWAFIAPKLIGGQRAPSPIGE 333


>gi|251811149|ref|ZP_04825622.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875812|ref|ZP_06284679.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
           SK135]
 gi|251805369|gb|EES58026.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294837|gb|EFA87364.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
           SK135]
 gi|329730651|gb|EGG67035.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
           VCU144]
 gi|329737423|gb|EGG73677.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
           VCU028]
          Length = 347

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/317 (33%), Positives = 164/317 (51%), Gaps = 9/317 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           +RFM  A++ ++   G T  NP V  ++VK+G ++G G     G  HAEVQA+E AG   
Sbjct: 2   SRFMDDAIQLAKMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLNT 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           +GAT YV+LEPC+H+G +PPC   IIE GI +V+  V   D  +  +G + L + GI V+
Sbjct: 62  QGATIYVSLEPCTHHGSTPPCVDKIIEAGISKVIYAV--KDTTLVSKGDEILREAGIEVE 119

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
                        + T +  +   +T+K++ S D         S  IT    K  V+ LR
Sbjct: 120 FQYNENAAALYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLR 179

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DA++ G  T+ AD+P  T R+   +   P+R+IL    +L  + +I K    + + I
Sbjct: 180 HEHDAVITGRRTIEADNPLYTTRVPDGKH--PIRVILSKKGQLDFNQQIFKDT-ASEIWI 236

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            TEN+      +F K  INI  CD      +L  L  RG+  LLVE G  +   F+ S+ 
Sbjct: 237 YTENEKLKTDKSFIKI-INISNCDTT---TILQDLYQRGIGKLLVEAGPNITSQFLQSKH 292

Query: 308 VDSIILYRSQIVIGEGG 324
           ++ +ILY +  +IG  G
Sbjct: 293 LNELILYIAPKLIGGSG 309


>gi|332527289|ref|ZP_08403353.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Rubrivivax benzoatilyticus JA2]
 gi|332111705|gb|EGJ11686.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Rubrivivax benzoatilyticus JA2]
          Length = 370

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/334 (34%), Positives = 169/334 (50%), Gaps = 14/334 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
           MP++  D   +  AL  +   +GLT  NP V C+I   DG V+GRG T   G  HAEV A
Sbjct: 1   MPLAPLDRTRLLEALALAEGSIGLTDPNPRVGCVIGHDDGRVLGRGATQRAGQAHAEVMA 60

Query: 60  LEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           L +A   G + RGATA+VTLEPC+H+GR+PPC   ++  GI RVVV V DP  +V+G G+
Sbjct: 61  LRDAAAAGHDTRGATAWVTLEPCAHHGRTPPCCDALVAAGIARVVVAVGDPFPQVAGAGI 120

Query: 117 QWLSQKGIIV---DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP 173
             L   G+ V   D  + +  +     + +R    R  + +KIA S D    +    S  
Sbjct: 121 TRLRAAGVQVELGDEDIAAAARELNIGFFSRVERGRPWLRMKIAASLDGRTALPNGASQW 180

Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLS 231
           ITG  ++   H  R ++  +L GIGTVL DDP L  R     LQ   PMR ++D   +L 
Sbjct: 181 ITGEAARTDGHAWRRRAGCVLTGIGTVLDDDPRLDVRRVPTVLQ---PMRAVMDSGLRLP 237

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI-IYCDCR-DLKKLLTILVGRGVTS 289
             ++++       V           AL      ++     D R D   +L  L   GV  
Sbjct: 238 AGARVLAPPGRCLVFHAAPASPAAAALTAAGAELHARPGTDGRVDAPAVLADLAALGVNE 297

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           L VE GA +  + + + LVD +++Y + +++GEG
Sbjct: 298 LHVEAGARLNGALLAAGLVDELLVYTAPLLLGEG 331


>gi|116072381|ref|ZP_01469648.1| Riboflavin biosynthesis protein RibD [Synechococcus sp. BL107]
 gi|116064903|gb|EAU70662.1| Riboflavin biosynthesis protein RibD [Synechococcus sp. BL107]
          Length = 354

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 175/330 (53%), Gaps = 13/330 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           +DA +M  AL  +    G TS NP V  +++ + G ++G G  A  G PHAEV AL +AG
Sbjct: 2   WDA-WMRRALALAGLADGHTSPNPLVGAVVLDRHGRLVGEGFHARAGEPHAEVGALAQAG 60

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           + A+G T  VTLEPC H+GR+PPC++ ++  GI RVV+ ++DPD RV G G+  L   G+
Sbjct: 61  DRAKGGTLVVTLEPCCHHGRTPPCSEAVLRAGIARVVIALEDPDPRVDGGGMAQLRAAGL 120

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            ++  ++++E      A+L R    R   TLK A+  D    ++   S  I+G  ++  V
Sbjct: 121 DVISGVLQAEAAFQNRAFLHRVRTGRPWGTLKWAMGLDGRTALSNGESQWISGPTARRWV 180

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H LR++SDA++VG GTV ADDP LT R  G ++  P+R++L    +L + +++  T+L +
Sbjct: 181 HQLRSKSDAVIVGGGTVRADDPLLTSR--GRRKPEPLRVVLSRSMELPVTAQLWDTSLAS 238

Query: 244 PVII--VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            ++       + P             +     + K L+  L  RG   +L E G  +A +
Sbjct: 239 TLVAHGPEAQEQPF------PHGPQRLLLSASEPKPLMQELANRGCNRVLWECGPELAAA 292

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
            I    +  +    +  ++G     +PL E
Sbjct: 293 AIRQGCIQEVAAVVAPKLMGGVAARTPLGE 322


>gi|82751356|ref|YP_417097.1| riboflavin specific deaminase [Staphylococcus aureus RF122]
 gi|82656887|emb|CAI81317.1| riboflavin specific deaminase [Staphylococcus aureus RF122]
          Length = 347

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 106/317 (33%), Positives = 158/317 (49%), Gaps = 9/317 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           ++FM  A++ +    G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A
Sbjct: 2   SQFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNA 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            GAT Y+TLEPCSH+G +PPC   II+C I +VV    D  +   G     L   GI V+
Sbjct: 62  EGATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGDDT--LRDHGIEVE 119

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + +         +   + ++   IT+K++ S D         S  IT    K  V+ LR
Sbjct: 120 CVDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLR 179

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DA+L G  TV  DDP+ T  +   +  +P+++IL     +  + +I +     P+ I
Sbjct: 180 HRHDAVLTGRRTVELDDPQYTTLIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWI 236

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            TEN +    L   + +I II     DL  +L  L  RGV +LLVE G      F+ S  
Sbjct: 237 YTENPN----LTTNQTHIEIICLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNY 292

Query: 308 VDSIILYRSQIVIGEGG 324
           +D  ILY +  +IG  G
Sbjct: 293 IDEFILYYAPKLIGGSG 309


>gi|315503254|ref|YP_004082141.1| riboflavin biosynthesis protein ribd [Micromonospora sp. L5]
 gi|315409873|gb|ADU07990.1| riboflavin biosynthesis protein RibD [Micromonospora sp. L5]
          Length = 353

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 117/323 (36%), Positives = 164/323 (50%), Gaps = 30/323 (9%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  A+  +   +G TS NP V C+++  DG V+G G  AY G PHAE+ AL +AG  ARG
Sbjct: 10  MRRAIELAARGLGATSPNPVVGCVLLDTDGEVVGEGFHAYAGGPHAEIVALAQAGTRARG 69

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-- 127
            TA VTLEPC H GR+ PC+  +I  G+ RVV+ V DP+   SG G   L   G+ V   
Sbjct: 70  GTAVVTLEPCDHTGRTGPCSHALIAAGVSRVVIAVPDPNPVASG-GAATLRAAGVQVALG 128

Query: 128 -RMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
            R  E+E G +   A+LT       ++  K A + D     A   S+ IT   ++  VH 
Sbjct: 129 VRAQEAEAGNV---AWLTSMRRGWPYVIWKYAATLDGRSAAADGTSMWITSEAARIDVHA 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL---NGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           LR   DA+L G+GTVL DDP LT R      +    P+R+++D   +   D+++   A  
Sbjct: 186 LRGTVDAVLAGVGTVLTDDPRLTARNLRDGTMAIRQPLRVVVDSSGRTPADARVRDGAAR 245

Query: 243 APVIIVTE-NDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAH 300
             +    E    P                D R DL  LL  L  RGV + L+EGG  +A 
Sbjct: 246 TWIATAAEVGAGP----------------DGRVDLPALLAELHHRGVRAALLEGGPTLAG 289

Query: 301 SFINSRLVDSIILYRSQIVIGEG 323
           +F+ + LVD I+ Y +  ++G G
Sbjct: 290 AFLAAGLVDRIVGYVAPKLLGAG 312


>gi|237725969|ref|ZP_04556450.1| riboflavin biosynthesis protein ribD [Bacteroides sp. D4]
 gi|229435777|gb|EEO45854.1| riboflavin biosynthesis protein ribD [Bacteroides dorei 5_1_36/D4]
          Length = 355

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/356 (33%), Positives = 184/356 (51%), Gaps = 31/356 (8%)

Query: 7   DARFMSAALRFSRWHVGL--TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           D +++S  L+ +  H GL  T+ NP V  +IV    +IG G     G  HAEV A+    
Sbjct: 4   DEKYISRCLQLA--HNGLCNTAPNPMVGAVIVYHDTIIGEGYHIRCGEAHAEVNAIRSVK 61

Query: 65  EEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           +E   + +T YV+LEPCSHYG++PPCA  IIE  I +VV+   DP   V+GRG++ L + 
Sbjct: 62  DENLLKESTIYVSLEPCSHYGKTPPCADLIIEKKIPKVVIGCMDPFSLVAGRGIEKLRKA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFIS 179
           GI V   ++E E +  +  ++T    KR +ITLK A S D  I +   G  PI  +  ++
Sbjct: 122 GIEVTVGVLEEECRHLIRRFITFNTLKRPYITLKWAESTDGFIDINRTGGKPIKLSNPLT 181

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
              VH  RA+ DAILVG  T L D+P L+ R N   +H P+R+++D    L  D ++   
Sbjct: 182 SMLVHKKRAEHDAILVGRRTALLDNPSLSTR-NWYGKH-PVRLVIDKELTLPRDLELFSG 239

Query: 240 ALLAPVIIVTENDDP-----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
            +   V        P      ++L F K            L +++ +L  + + SLLVEG
Sbjct: 240 RIKTFVFTRKSPHQPNTLTEYISLDFSKD----------ILPQIMEVLYQKKIQSLLVEG 289

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
           G+ +  SFI+S L D   + +  + +  G     +E   ++K +  + + YFG ++
Sbjct: 290 GSILLQSFIDSSLWDEAFIEKVPLCLKNG-----IEAPSIQKKYFKLNKIYFGREI 340


>gi|212695385|ref|ZP_03303513.1| hypothetical protein BACDOR_04934 [Bacteroides dorei DSM 17855]
 gi|237711578|ref|ZP_04542059.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 9_1_42FAA]
 gi|265753006|ref|ZP_06088575.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_1_33FAA]
 gi|212662020|gb|EEB22594.1| hypothetical protein BACDOR_04934 [Bacteroides dorei DSM 17855]
 gi|229454273|gb|EEO59994.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 9_1_42FAA]
 gi|263236192|gb|EEZ21687.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_1_33FAA]
          Length = 355

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/356 (33%), Positives = 184/356 (51%), Gaps = 31/356 (8%)

Query: 7   DARFMSAALRFSRWHVGL--TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           D +++S  L+ +  H GL  T+ NP V  +IV    +IG G     G  HAEV A+    
Sbjct: 4   DEKYISRCLQLA--HNGLCNTAPNPMVGAVIVYHDTIIGEGYHIRCGEAHAEVNAIRSVK 61

Query: 65  EEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           +E   + +T YV+LEPCSHYG++PPCA  IIE  I +VV+   DP   V+GRG++ L + 
Sbjct: 62  DENLLKESTIYVSLEPCSHYGKTPPCADLIIEKKIPKVVIGCMDPFSLVAGRGIEKLRKA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFIS 179
           GI V   ++E E +  +  ++T    KR +ITLK A S D  I +   G  PI  +  ++
Sbjct: 122 GIEVTVGVLEEECRHLIRRFITFNTLKRPYITLKWAESTDGFIDINRTGGKPIKLSNPLT 181

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
              VH  RA+ DAILVG  T L D+P L+ R N   +H P+R+++D    L  D ++   
Sbjct: 182 SMLVHKKRAEHDAILVGRRTALLDNPSLSTR-NWYGKH-PVRLVIDKELTLPRDLELFSG 239

Query: 240 ALLAPVIIVTENDDP-----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
            +   V        P      ++L F K            L +++ +L  + + SLLVEG
Sbjct: 240 RIKTFVFTRKSPHQPNTLTEYISLDFSKD----------ILPQIMEVLYQKKIQSLLVEG 289

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
           G+ +  SFI+S L D   + +  + +  G     +E   ++K +  + + YFG ++
Sbjct: 290 GSILLQSFIDSSLWDEAFIEKVPLCLKNG-----IEAPSIQKKYFKLNKIYFGREI 340


>gi|258546002|ref|ZP_05706236.1| riboflavin biosynthesis protein RibD [Cardiobacterium hominis ATCC
           15826]
 gi|258518731|gb|EEV87590.1| riboflavin biosynthesis protein RibD [Cardiobacterium hominis ATCC
           15826]
          Length = 369

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 117/327 (35%), Positives = 172/327 (52%), Gaps = 5/327 (1%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  ++ D  +M AAL  +R  +  T+ NP V C+IVK G  +G+G     G PHAE  AL
Sbjct: 1   MTTAAQDIPWMQAALELARQGIFSTAPNPRVGCVIVKGGEAVGKGFHVRAGEPHAEAHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAG  ARGATAYV LEPC+H GR+PPCA  +I  G+ RVVV   DP+  V+G+G+  L 
Sbjct: 61  REAGAAARGATAYVNLEPCAHQGRTPPCADALIAAGVARVVVACRDPNPLVAGQGIARLQ 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI + + + E E +     +  R    R  +T+K+A S D    +A   S  IT   +
Sbjct: 121 AAGIDVTEGVCEEEAQALNSGFFRRITTGRPFVTVKLAASLDGKTALANGESQWITSEAA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIK 238
           +  VH  R  +DAI+ G G+++ D+  LT R    L    P+R+I+D   +   D+ +  
Sbjct: 181 RADVHYHRLAADAIIAGTGSIIRDNARLTARYPTELPNQPPLRVIIDSRLRTPRDAAVFD 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAA 297
               +P++IV   D          + + +     R  L  LL  L  RGV +  VE GA+
Sbjct: 241 DP--SPILIVCGMDARAPNYPAHVEWLRLPLVGGRVPLPALLDELGTRGVNNAFVEAGAS 298

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGG 324
           +A +F+   L D I+LY +  ++G G 
Sbjct: 299 LAGAFLEQNLADEILLYLAPCLLGSGA 325


>gi|260642492|ref|ZP_05859416.1| riboflavin biosynthesis protein RibD [Bacteroides finegoldii DSM
           17565]
 gi|260621884|gb|EEX44755.1| riboflavin biosynthesis protein RibD [Bacteroides finegoldii DSM
           17565]
          Length = 373

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 116/352 (32%), Positives = 184/352 (52%), Gaps = 24/352 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + ++M   +  ++  +   + NP V  +IV DG +IG G     G  HAEV A+    +E
Sbjct: 31  EEKYMRRCIELAKNGLCNVAPNPMVGAVIVCDGRIIGEGYHVRCGEAHAEVNAIRSVKDE 90

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG- 123
           +  + +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP  +V+GRG+Q L   G 
Sbjct: 91  SLLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCRDPFSKVAGRGIQKLQNAGR 150

Query: 124 -IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISK 180
            +IV  ++E E    +  ++T    +R  ITLK A S D  I +      P+  +  ++ 
Sbjct: 151 EVIVG-VLEEECLHLIRRFITFNTLRRPFITLKWAESADQFIDIERIDGNPVLLSSPLTS 209

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             VH  RA++ AI+VG  T L D+P LT R       +P+RI+LD +  L  D +I    
Sbjct: 210 MLVHKKRAENTAIMVGRRTALLDNPSLTVR--NWYGRNPIRIVLDRNLSLPNDLQIFNGE 267

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAV 298
           +  P ++ TE + P       +K+++ I  D     LK ++  L  R + SLLVEGG+ +
Sbjct: 268 V--PTLVFTEKEHP------EEKSVSYITIDFGHNPLKLIMEELYQRNIQSLLVEGGSQL 319

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
             SFI++ L D   + +    +   G+ SP     +  NF    +++FG  +
Sbjct: 320 LQSFIDNELWDEAYIEKCPKRL-YSGVKSP----EISNNFSYSTKEHFGRQI 366


>gi|121605806|ref|YP_983135.1| riboflavin biosynthesis protein RibD [Polaromonas naphthalenivorans
           CJ2]
 gi|120594775|gb|ABM38214.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Polaromonas
           naphthalenivorans CJ2]
          Length = 370

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 110/325 (33%), Positives = 165/325 (50%), Gaps = 11/325 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D   M  A+  +   + +TS NP V C++   G V+G+G T   G PHAE+ AL +A   
Sbjct: 7   DTEMMPRAVALALAAMRITSPNPRVGCVLTSSGDVLGQGHTQAAGHPHAEIMALRDAAAQ 66

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G    GATAYVTLEPCSH+GR+ PC   +I  GI+++V  + DP+  VSG+G + L   G
Sbjct: 67  GHSVVGATAYVTLEPCSHHGRTGPCCDALIAAGIKKIVASIADPNPLVSGQGFERLRAAG 126

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V+     +E +     + +R + K   + +K+A S D    +A   S  IT   ++  
Sbjct: 127 IEVEVGPGAAESRELNIGFFSRMIRKTPWVRMKMAASLDGTTALANGQSQWITSAEARAD 186

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H  RA++ A+L GIGTVL D+P L  RL       P  I++D   +  LD+ +      
Sbjct: 187 GHAWRARACAVLTGIGTVLQDNPRLDVRLVSTPRQ-PHLIVVDSRLETPLDAHLFIAGRA 245

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG----RGVTSLLVEGGAAV 298
             +    +N+    AL    K   +IY    + K  LT +V     R +  L VE G+ +
Sbjct: 246 LYIYAAVQNEAKKQAL--EAKGATVIYLPDANGKVDLTAMVQDLGRREINELHVEAGSKL 303

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323
             S I + LVD  +LY +  ++G G
Sbjct: 304 NGSLIRAGLVDEFLLYLAPKLLGPG 328


>gi|302333432|gb|ADL23625.1| bifunctional pyrimidine reductase / riboflavin biosynthesis protein
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 343

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 106/314 (33%), Positives = 156/314 (49%), Gaps = 9/314 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A++ +    G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A GA
Sbjct: 1   MDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGNKHAEVQALDMAQQNAEGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           T Y+TLEPCSH+G +PPC   II+C I +VV    D  +   G     L   GI V+ + 
Sbjct: 61  TIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGDDT--LRAHGIEVECVD 118

Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
           +         +   + ++   IT+K++ S D         S  IT    K  V+ LR + 
Sbjct: 119 DERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRH 178

Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
           DA+L G  TV  DDP+ T R+   +  +P+++IL     +  + +I +      + I TE
Sbjct: 179 DAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDESTL-IWIYTE 235

Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
           N +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  +D 
Sbjct: 236 NPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDE 291

Query: 311 IILYRSQIVIGEGG 324
            ILY +  +IG  G
Sbjct: 292 FILYYAPKLIGGSG 305


>gi|166154072|ref|YP_001654190.1| riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis 434/Bu]
 gi|166154947|ref|YP_001653202.1| riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|165930060|emb|CAP03543.1| Riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis 434/Bu]
 gi|165930935|emb|CAP06497.1| Riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 375

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 108/322 (33%), Positives = 160/322 (49%), Gaps = 5/322 (1%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  A+            NP V C+IVK+G VIG G     G PHAEV A+++      G
Sbjct: 11  FMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQDQKCSLEG 70

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           A  YVTLEPC H+GR+PPC   +I+  +  V V + DPD RV  +G+  L   GI V   
Sbjct: 71  AEVYVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAAGIPVYVG 130

Query: 130 MES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + S E K  L  YL ++      + +K A S D      G  S  I+G +++  V  LRA
Sbjct: 131 VGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARADVGKLRA 190

Query: 189 QSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           +S AI+VG  TV  D+P L+ R     L E  P+R+++D    + L+S++   +  + + 
Sbjct: 191 ESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDLSSGSTLF 250

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
             T+          +   + +        DLK LL  L  RG   +LVEGGA +  +F  
Sbjct: 251 ATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLAERGCLQVLVEGGAQLHSAFWQ 310

Query: 305 SRLVDSIILYRSQIVIGEGGIP 326
            +LV++ ++Y     +G+ G P
Sbjct: 311 QKLVNAGVIYWGPKFLGDQGQP 332


>gi|255349125|ref|ZP_05381132.1| riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis 70]
 gi|255503662|ref|ZP_05382052.1| riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis 70s]
 gi|255507341|ref|ZP_05382980.1| riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis D(s)2923]
 gi|289525774|emb|CBJ15255.1| Riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis Sweden2]
 gi|296435349|gb|ADH17527.1| riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis E/150]
 gi|296439066|gb|ADH21219.1| riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis E/11023]
          Length = 375

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 108/322 (33%), Positives = 160/322 (49%), Gaps = 5/322 (1%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  A+            NP V C+IVK+G VIG G     G PHAEV A+++      G
Sbjct: 11  FMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQDQKCSLEG 70

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           A  YVTLEPC H+GR+PPC   +I+  +  V V + DPD RV  +G+  L   GI V   
Sbjct: 71  AEVYVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAAGIPVYVG 130

Query: 130 MES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + S E K  L  YL ++      + +K A S D      G  S  I+G +++  V  LRA
Sbjct: 131 VGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARADVGKLRA 190

Query: 189 QSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           +S AI+VG  TV  D+P L+ R     L E  P+R+++D    + L+S++   +  + + 
Sbjct: 191 ESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDLSSGSTLF 250

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
             T+          +   + +        DLK LL  L  RG   +LVEGGA +  +F  
Sbjct: 251 ATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLAERGCLQVLVEGGAQLHSAFWQ 310

Query: 305 SRLVDSIILYRSQIVIGEGGIP 326
            +LV++ ++Y     +G+ G P
Sbjct: 311 QKLVNAGVIYWGPKFLGDQGQP 332


>gi|71282342|ref|YP_267480.1| riboflavin biosynthesis protein RibD [Colwellia psychrerythraea
           34H]
 gi|71148082|gb|AAZ28555.1| riboflavin biosynthesis protein RibD [Colwellia psychrerythraea
           34H]
          Length = 389

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 117/359 (32%), Positives = 180/359 (50%), Gaps = 55/359 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV--KDGI--VIGRGVTAYGGCPHAEVQALEEAGEE 66
           MS A+  ++     TS NP V C++V  K+G+  VIG G     G  HAEV AL EA   
Sbjct: 1   MSRAIDLAKKGHFTTSPNPRVGCVLVSYKEGVGKVIGEGYHQKAGQGHAEVNALAEAKVN 60

Query: 67  A----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                +GATAYVTLEPCSH+GR+PPCA+ +++ G+  V+  + DP+ +VSG GL  L + 
Sbjct: 61  NPALIKGATAYVTLEPCSHFGRTPPCAKALVDAGVSHVIAAMVDPNPQVSGNGLSLLEKA 120

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V   ++E   ++    ++ + V    ++  K+A S D    MA   S  IT   ++ 
Sbjct: 121 GITVQSGLLEQSARLLNVGFIHKMVNNLPYVRCKLAASLDGKTAMASGESKWITSADARQ 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFKLS 231
            V  LRAQS AI+ G  +VL D+ ++T R + L E            P+RI++D   +L+
Sbjct: 181 DVQRLRAQSCAIITGADSVLFDNAKMTVRWSELGELKSNYPKEALRQPLRIVIDSQNRLT 240

Query: 232 LDSKIIKTALLAPVIIVTENDD--------------------------PVLALAFRKKNI 265
            +  + +    +P++I+   D                           PV   +  K  I
Sbjct: 241 PNLALFEHQ--SPILIINGIDPDYVENKIESHLENLPKWPHFVEQVQLPVTENSQGKLKI 298

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           N        LK LL  L  RG+  +L+E GA ++ +FI   LV+ +ILY++  ++G  G
Sbjct: 299 N--------LKALLEYLAKRGLNDILIESGARLSGAFIEQNLVNELILYQAPKLMGGDG 349


>gi|260753016|ref|YP_003225909.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552379|gb|ACV75325.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 323

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 113/320 (35%), Positives = 163/320 (50%), Gaps = 44/320 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D R+M AA+       GLT+ +PSV C+IV KD  +IGRG T  GG PHAE  AL +  +
Sbjct: 7   DIRWMQAAIALGERSKGLTAPSPSVGCIIVNKDNQIIGRGWTQSGGRPHAEAMALSQC-Q 65

Query: 66  EARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
             +GAT YVTLEPC+H   R P C+  ++     RVV+   DPD R +G+G+  +   GI
Sbjct: 66  SLKGATVYVTLEPCAHKSNRGPTCSDSLVAAQPERVVIACRDPDHRTNGQGISKMVAAGI 125

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V+  ++E +    +  + +RQ++ R ++TLK+A S D  I +    S  ITG  ++   
Sbjct: 126 KVECGLLEKQAAQSMSGFFSRQLKARPYVTLKMATSLDGCIALENGESQWITGERARAHA 185

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           HL R +S+ I+VG  T+  D P L  RL  L + SP + +L  H ++   S  I   L  
Sbjct: 186 HLERMRSELIVVGRKTLEFDKPSLNVRLQSLGDRSPKKAVLG-HGEIP--SGWI--GLRE 240

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P  I+    D V                                   L+EGGA  A +F+
Sbjct: 241 PTDIIKTTADHV-----------------------------------LIEGGAKTAAAFL 265

Query: 304 NSRLVDSIILYRSQIVIGEG 323
              LVD I+LYR+ I+IG+G
Sbjct: 266 KGDLVDRILLYRAPILIGKG 285


>gi|257455158|ref|ZP_05620396.1| riboflavin biosynthesis protein RibD [Enhydrobacter aerosaccus
           SK60]
 gi|257447491|gb|EEV22496.1| riboflavin biosynthesis protein RibD [Enhydrobacter aerosaccus
           SK60]
          Length = 359

 Score =  166 bits (421), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 110/328 (33%), Positives = 161/328 (49%), Gaps = 30/328 (9%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEV----QALEEAGE 65
           +MS A+  ++     T  NPSV C+IVKD  +IG G     G PHAEV    QA E   +
Sbjct: 16  YMSRAIELAKKGRFTTRPNPSVGCVIVKDNQIIGEGFHYQAGQPHAEVFALRQAYERDAK 75

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
             +GA AYVTLEPCSH+GR+PPCA  +I+ GI RVV+ V DP+ +V G G+  L Q GI 
Sbjct: 76  HLQGAIAYVTLEPCSHHGRTPPCADALIQAGISRVVIAVVDPNPKVDGGGIAKLQQAGIE 135

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           ++  + E         +          + LKIA S D    MA   S  IT   S+  V 
Sbjct: 136 VITGICEQAAYQLNEGFFKVMRGGLPFVRLKIATSLDGRTAMANGESKWITSDQSREDVQ 195

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----SPMRIILDPHFKLSLDSKIIKT 239
            LRAQ+ AI+ G  T+L D P L  R   L  +      P+ ++LD   ++ +     ++
Sbjct: 196 RLRAQAGAIITGSETILQDHPALNIRSQQLGANLDDIPQPLLVVLDRRQRIQMTDAWYQS 255

Query: 240 ALLA-PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
            +   PV+++ ++   +  L                   L T+     +  +LVE GA V
Sbjct: 256 QITHRPVLLIQDSTMSLTTL-------------------LNTLKDNYQINDVLVEAGATV 296

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP 326
           A SF+   LVD +++Y++   +G    P
Sbjct: 297 AASFLQQGLVDELVVYQAPCFLGNSAKP 324


>gi|33598380|ref|NP_886023.1| putative riboflavin-specific deaminase [Bordetella parapertussis
           12822]
 gi|33574509|emb|CAE39154.1| putative riboflavin-specific deaminase [Bordetella parapertussis]
          Length = 386

 Score =  166 bits (421), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 112/326 (34%), Positives = 172/326 (52%), Gaps = 14/326 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D  +M  AL  +R  +  T+ NP V C+IV+DG V+G G T   G PHAEV AL EA   
Sbjct: 9   DVSWMRRALALARSVMYSTAPNPRVGCVIVRDGQVLGEGATQPPGGPHAEVCALREAAAR 68

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G    GAT YVTLEPCSH+GR+PPC   +      RVVV + DP+ RV+G+GL  L   G
Sbjct: 69  GASLAGATVYVTLEPCSHFGRTPPCVDALAAAAPARVVVAMGDPNPRVNGQGLARLRAAG 128

Query: 124 IIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   +  +  + L+A +  R       + LK+A S D    +    S  +TG  ++  
Sbjct: 129 IAVTEDVCRDEALELNAGFAARMSRGLPWVWLKLAASLDGRSALHNGVSQWMTGEAARAD 188

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTAL 241
            H  RA+S  +L G+GTVL DDP+L  R   +Q  H P + ++D  F++  D+++     
Sbjct: 189 GHHWRARSGVVLTGMGTVLKDDPQLNAR--AVQTSHPPRKAVIDGRFEIPEDARLFDDG- 245

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGA 296
            A V++ T   D   A     +N+ +I       D  DL  ++  L  + +  + VE GA
Sbjct: 246 -AQVLVFTARSDAAKARRMADRNVRVIELPGVRPDRVDLPAVMRWLASQEINEVHVEAGA 304

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGE 322
            ++ + +    VD +++Y + +++G+
Sbjct: 305 GLSGALLAEDCVDELLVYLAPVLLGD 330


>gi|328881089|emb|CCA54328.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase or
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Streptomyces venezuelae ATCC 10712]
          Length = 417

 Score =  166 bits (421), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 120/326 (36%), Positives = 174/326 (53%), Gaps = 22/326 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D   M  A+  +   +G TS NP V C++    G  +G G     G PHAEV AL EAG 
Sbjct: 66  DITAMRRAVELAARGLGATSPNPVVGCVVTDASGRPVGEGWHQRAGGPHAEVHALREAGA 125

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            ARG TAYVTLEPC+H GR+ PCAQ +IE GI RVV  V DP+ + +G G   L   G+ 
Sbjct: 126 LARGGTAYVTLEPCNHTGRTGPCAQALIEAGISRVVYAVGDPNPQATG-GADTLRAAGVD 184

Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V + ++E E +    A+LT     R  +  K A + D  I  A   S  IT   S+  VH
Sbjct: 185 VRQGLLEDEAEAVNLAWLTSVRRGRPFVRWKYAATLDGRIAAADGTSRWITSAESRADVH 244

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-SPMRIILDPH-FKLSLDSKIIKTALL 242
            LRA++DA++VG GT   DDP L  R  G+     P+R+++D     +   ++++  A  
Sbjct: 245 RLRAEADAVVVGSGTARTDDPHLAVR--GIDAAVQPLRVVVDTEATAVKAGARVLDDA-- 300

Query: 243 APVII-VTENDDPVLALAFR----KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
           AP +I V E+ D  L    R    ++ +++          LL  L  RGV S+L+EGG  
Sbjct: 301 APTLIAVAEDADTALTDVVRLPRAERGLSV--------PALLDALHARGVRSVLLEGGPT 352

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323
           +A +F+ +  VD ++ Y + +++G G
Sbjct: 353 LAGAFVAAGAVDQVVGYLAPVLLGAG 378


>gi|193215778|ref|YP_001996977.1| riboflavin biosynthesis protein RibD [Chloroherpeton thalassium
           ATCC 35110]
 gi|193089255|gb|ACF14530.1| riboflavin biosynthesis protein RibD [Chloroherpeton thalassium
           ATCC 35110]
          Length = 368

 Score =  166 bits (421), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 106/335 (31%), Positives = 167/335 (49%), Gaps = 11/335 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           S D  ++   L+ ++   G  S NP V  +IV +G +IG G     G PHAEV A+    
Sbjct: 6   SEDEFYIDRCLKLAKKGAGFVSPNPLVGSVIVHNGKIIGEGFHEVYGGPHAEVNAIGSVA 65

Query: 65  EEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           +    + +T YV LEPC+H+G++PPCA  II   I RVV+   DP   VSG+G + L   
Sbjct: 66  QPILLQESTLYVNLEPCAHFGKTPPCADLIIRHKIPRVVIGCLDPFEHVSGKGAEKLRHA 125

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ V   ++ESE      A++   ++KR  + LK A + D  I      S  IT   S+ 
Sbjct: 126 GVEVKVGVLESEALRLNEAFIHFHIQKRPFVALKFAQTLDGKIATTSGDSKWITNKASRT 185

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
             H LR+   AIL+G  T LADDPELT R   ++  +P+R++LD    + L +KI   A 
Sbjct: 186 LGHQLRSWHSAILIGTNTALADDPELTVR--HVEGKNPVRVLLDRRLSVPLTAKIFNAAA 243

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297
              V   ++N +        +KN+ + +    +      ++  +L  + + S+ VEGG+ 
Sbjct: 244 NTLVFTSSQNTNHPKVGKLNEKNVEVFFVTENEAGLSFSEIFQVLYEKKLLSVYVEGGSG 303

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS--PLE 330
           V    I     +    + +  ++G  G+ +  PLE
Sbjct: 304 VYSRLIQEGYCEKFYGFIAPKIVGGDGLATFRPLE 338


>gi|302866839|ref|YP_003835476.1| riboflavin biosynthesis protein RibD [Micromonospora aurantiaca
           ATCC 27029]
 gi|302569698|gb|ADL45900.1| riboflavin biosynthesis protein RibD [Micromonospora aurantiaca
           ATCC 27029]
          Length = 353

 Score =  166 bits (421), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 117/323 (36%), Positives = 164/323 (50%), Gaps = 30/323 (9%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  A+  +   +G TS NP V C+++  DG V+G G  AY G PHAE+ AL +AG  ARG
Sbjct: 10  MRRAIELAVRGLGATSPNPVVGCVLLDTDGEVVGEGFHAYAGGPHAEIVALAQAGTRARG 69

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-- 127
            TA VTLEPC H GR+ PC+  +I  G+ RVV+ V DP+   SG G   L   G+ V   
Sbjct: 70  GTAVVTLEPCDHTGRTGPCSHALIAAGVSRVVIAVPDPNPVASG-GAATLRAAGVQVALG 128

Query: 128 -RMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
            R  E+E G +   A+LT       ++  K A + D     A   S+ IT   ++  VH 
Sbjct: 129 VRAQEAEAGNV---AWLTSMRRGWPYVIWKYAATLDGRSAAADGTSMWITSEAARIDVHA 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL---NGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           LR   DA+L G+GTVL DDP LT R      +    P+R+++D   +   D+++   A  
Sbjct: 186 LRGTVDAVLAGVGTVLTDDPRLTARNLRDGTMAIRQPLRVVVDSSGRTPADARVRDGAAR 245

Query: 243 APVIIVTE-NDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAH 300
             +    E    P                D R DL  LL  L  RGV + L+EGG  +A 
Sbjct: 246 TWIATAAEVGAGP----------------DGRVDLPALLAELHHRGVRAALLEGGPTLAG 289

Query: 301 SFINSRLVDSIILYRSQIVIGEG 323
           +F+ + LVD I+ Y +  ++G G
Sbjct: 290 AFLAAGLVDRIVGYVAPKLLGAG 312


>gi|149001717|ref|ZP_01826690.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP14-BS69]
 gi|147760175|gb|EDK67164.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP14-BS69]
          Length = 341

 Score =  166 bits (421), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 104/296 (35%), Positives = 160/296 (54%), Gaps = 7/296 (2%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQ 90
           V  +IVKD  +IG+G   + G PHAE  AL+   E   GAT YVTLEPC H+G++PPC  
Sbjct: 2   VGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRESPVGATLYVTLEPCCHFGKTPPCID 61

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKR 149
            II+ GI RVV+   D +  VSG+G++ L +  + V   ++E+E    + ++     +  
Sbjct: 62  AIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQVTVGILENECLNLIKSFRKYITQHV 121

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++ +K A+S D  I      S  IT   ++  VH LR    AI+VG+ TV+ DDP LTC
Sbjct: 122 PYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQLRHHVSAIMVGVNTVIQDDPLLTC 181

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
           RL   +  +P+RII D H +  L SKI+KTA      I T ++D      ++     I+ 
Sbjct: 182 RLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKTYIATSSEDKNKMKLYQNHGCEILS 239

Query: 270 CDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
              +    DL  L+  L    + SL++EGG+ +  S +  ++VD + +Y +  + G
Sbjct: 240 IKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPKIFG 295


>gi|222528581|ref|YP_002572463.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222455428|gb|ACM59690.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 371

 Score =  166 bits (421), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 105/313 (33%), Positives = 163/313 (52%), Gaps = 12/313 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
           + +M+ AL  ++    L   NP V C+IVK+G VIG+G     G  HAEV A+E+A   G
Sbjct: 7   SYYMNMALELAKKASPLVLPNPRVGCVIVKNGTVIGKGYHQKYGEKHAEVLAIEDAIKNG 66

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
              + AT YVTLEPC H+G+ PPC   II+ GI++VVV   DP+  V+G+G+Q L Q GI
Sbjct: 67  YLLKNATMYVTLEPCCHFGKQPPCTDAIIKSGIKKVVVATKDPNPLVNGKGIQILKQHGI 126

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +++ +++ E +     +         +I +K+A S D  I                  V
Sbjct: 127 EVIEGVLQKEAESINKDFFKYMKTGIPYIAIKVAQSIDGKIATPSNKRFLFNTEEENVFV 186

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA-LL 242
           H LR +  AILV + TV++D+P L  R  G     P R++LD   ++ L+  I+KTA   
Sbjct: 187 HSLRQKYMAILVSVNTVISDNPILNARY-GQIVRQPTRVVLDSKLRIPLECNIVKTADKY 245

Query: 243 APVIIVTENDDPVLAL-AFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296
           +  I+ +EN + +  +    +K I II+         DL    + L  + + S+LVEGG+
Sbjct: 246 STYIVCSENVNDIQKIDLLSQKGIKIIFAKSSEDGHLDLSDAFSKLAQQKIVSVLVEGGS 305

Query: 297 AVAHSFINSRLVD 309
            +    +  R+ D
Sbjct: 306 LLNFFLLKQRIAD 318


>gi|284033021|ref|YP_003382952.1| riboflavin biosynthesis protein RibD [Kribbella flavida DSM 17836]
 gi|283812314|gb|ADB34153.1| riboflavin biosynthesis protein RibD [Kribbella flavida DSM 17836]
          Length = 344

 Score =  166 bits (421), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 113/325 (34%), Positives = 159/325 (48%), Gaps = 30/325 (9%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE 61
            S  D  +M  A+  +   +G T  NP V C+I  +DG   G G  A  G PHAEV AL 
Sbjct: 4   ASPIDVAWMRRAIELAARGLGSTHPNPVVGCVITGRDGHPAGEGFHAVAGGPHAEVAALR 63

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG+ ARG TAYVTLEPC+H GR+ PCA  +IE G+ RV+  V DP+ + +G G   L  
Sbjct: 64  MAGDRARGGTAYVTLEPCNHTGRTGPCADALIEAGVARVLYAVPDPNRQAAG-GADKLRS 122

Query: 122 KGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           K + V++ ++ +E +   H +L      R  +T K A + D         S  ITG  ++
Sbjct: 123 KNVHVEQGLLRAEAEAVNHVWLHSVRMGRPFVTWKFATTLDGRSAAPDRSSRWITGEQAR 182

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSKIIK 238
             VH  RA+ DAI VG  TVL DDPELT R    +     P+R+++        D +I  
Sbjct: 183 ADVHRQRAECDAIAVGTQTVLTDDPELTVRDAQDRPVGRQPLRVVVG-------DREIPA 235

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
           TA +                  R      +     D  ++L  L    +  L +EGG  +
Sbjct: 236 TARV------------------RNDRAETLLLPTHDPAEVLRQLDDHHIRHLWLEGGPTL 277

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323
           A +F+ S LVD I+ Y +  V+G G
Sbjct: 278 AAAFLRSGLVDQIVAYVAPAVLGSG 302


>gi|189462016|ref|ZP_03010801.1| hypothetical protein BACCOP_02688 [Bacteroides coprocola DSM 17136]
 gi|189431230|gb|EDV00215.1| hypothetical protein BACCOP_02688 [Bacteroides coprocola DSM 17136]
          Length = 344

 Score =  166 bits (421), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 112/323 (34%), Positives = 171/323 (52%), Gaps = 15/323 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D +++   ++ +R  +   + NP V  +IV +  +IG G     G  HAEV A+    +E
Sbjct: 4   DEKYIRRCIQLARNGMCNAAPNPMVGAVIVCNDRIIGEGYHVRCGEGHAEVNAIRSVKDE 63

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +  + +T YV+LEPCSHYG++PPCA  II  GI RVVV   DP   VSGRG+Q L   GI
Sbjct: 64  SLLKKSTIYVSLEPCSHYGKTPPCADLIISKGIPRVVVGCVDPFSLVSGRGIQKLRDAGI 123

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181
            V   ++E+E +  +  ++T  ++KR +ITLK A S D  I +      P+  +  I+  
Sbjct: 124 EVTVGVLENECRALIKRFVTFNIQKRPYITLKWAESADGFIDVNRESGQPVILSTPITSM 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH  RA+  AILVG  T L D+P LT R       +P+R+++D    L L+ K+     
Sbjct: 184 YVHKQRAEHQAILVGRKTALLDNPSLTTR--NWYGKNPIRLVIDKELTLPLNLKLFDGKT 241

Query: 242 LAPVIIVTENDDPVLALAFRKK-NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
              V    E +     + ++   N NI       L ++L IL    + SLLVEGG+ +  
Sbjct: 242 PTWVFTALEKESTTNIIYYKLDFNQNI-------LPQILQILYENKLQSLLVEGGSQLLQ 294

Query: 301 SFINSRLVDSIILYRSQIVIGEG 323
           SFI+  + D I +  S+ ++ +G
Sbjct: 295 SFIDEEIWDEIYIEYSEALLHKG 317


>gi|294635299|ref|ZP_06713797.1| riboflavin biosynthesis protein RibD [Edwardsiella tarda ATCC
           23685]
 gi|291091308|gb|EFE23869.1| riboflavin biosynthesis protein RibD [Edwardsiella tarda ATCC
           23685]
          Length = 319

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 106/290 (36%), Positives = 151/290 (52%), Gaps = 26/290 (8%)

Query: 53  PHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           PHAEV AL  AGE ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+
Sbjct: 1   PHAEVHALRMAGERARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPHVA 60

Query: 113 GRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS 171
           GRGL  L Q GI V   +M +E +     +L R      ++ LK+  S D    MA   S
Sbjct: 61  GRGLYRLQQAGIEVRHGLMLAEAEAVNKGFLKRMRTGFPYVQLKLGASLDGRTAMASGES 120

Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----QEH-------SPM 220
             IT   ++  V   RAQS AIL    TVLADDP LT R + L    Q H        P+
Sbjct: 121 QWITSAAARADVQRYRAQSSAILSSSATVLADDPSLTVRWDELDDETQRHYPREWLRQPL 180

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDD------PVLALAFRKKNINIIYCDCRD 274
           R+I+D H +++   ++I        ++  E  D       V  L+  +    +      D
Sbjct: 181 RVIVDSHNRVTPQHRLISQP--GETLLARETPDTQAWPSAVSQLSLPRNGAGL------D 232

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           L  L+  L  R + S+ VE G  +A + + + +VD +I+Y +  ++G+  
Sbjct: 233 LVLLMMQLGKRQINSVWVEAGPRLAGALLQAGVVDELIVYLAPKLLGDAA 282


>gi|294811515|ref|ZP_06770158.1| putative riboflavin/cytosine deaminase [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324114|gb|EFG05757.1| putative riboflavin/cytosine deaminase [Streptomyces clavuligerus
           ATCC 27064]
          Length = 449

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 116/318 (36%), Positives = 165/318 (51%), Gaps = 11/318 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE 61
            ++ D   M  A+  +   +G TS NP V C+I    G + G G     G PHAEV AL 
Sbjct: 63  ATAADIAAMRRAIELAARGLGSTSPNPVVGCVITDASGEIAGTGYHERAGGPHAEVHALR 122

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG  ARG TAYVTLEPC H GR+ PC+Q ++  GI RVV  V DP+ + SG G   L  
Sbjct: 123 AAGTRARGGTAYVTLEPCDHTGRTGPCSQALLAAGITRVVHAVADPNPQASG-GAGTLRA 181

Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            G+ V+  ++  E +    A+LT     R  +  K A + D  I      S  IT   ++
Sbjct: 182 AGVRVECGLLGPEAEAVNAAWLTSVRLGRPQVVWKYAATLDGRIAAEDRSSRWITSPEAR 241

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
             VH LRA +DA+++G GT+  DDP+L  R + G  +  P+R++LD    ++  ++++  
Sbjct: 242 ADVHRLRAGADAVVIGSGTLRTDDPQLAVRGIEGAVQ--PLRVVLDSRATVTPAARVLDD 299

Query: 240 ALLAPVII-VTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGA 296
           A  AP +I V E  D           +       R  DL  LL  L  RGV S+L+EGG 
Sbjct: 300 A--APTLIAVGEGADTGHLPGVDTVVLPAAPGPGRGLDLHALLAELSARGVRSVLLEGGP 357

Query: 297 AVAHSFINSRLVDSIILY 314
            +A +F+ +R VD +I Y
Sbjct: 358 TLAGAFVAARAVDKVIGY 375


>gi|326440097|ref|ZP_08214831.1| putative riboflavin/cytosine deaminase [Streptomyces clavuligerus
           ATCC 27064]
          Length = 388

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 116/317 (36%), Positives = 165/317 (52%), Gaps = 11/317 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++ D   M  A+  +   +G TS NP V C+I    G + G G     G PHAEV AL  
Sbjct: 3   TAADIAAMRRAIELAARGLGSTSPNPVVGCVITDASGEIAGTGYHERAGGPHAEVHALRA 62

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  ARG TAYVTLEPC H GR+ PC+Q ++  GI RVV  V DP+ + SG G   L   
Sbjct: 63  AGTRARGGTAYVTLEPCDHTGRTGPCSQALLAAGITRVVHAVADPNPQASG-GAGTLRAA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ V+  ++  E +    A+LT     R  +  K A + D  I      S  IT   ++ 
Sbjct: 122 GVRVECGLLGPEAEAVNAAWLTSVRLGRPQVVWKYAATLDGRIAAEDRSSRWITSPEARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            VH LRA +DA+++G GT+  DDP+L  R + G  +  P+R++LD    ++  ++++  A
Sbjct: 182 DVHRLRAGADAVVIGSGTLRTDDPQLAVRGIEGAVQ--PLRVVLDSRATVTPAARVLDDA 239

Query: 241 LLAPVII-VTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297
             AP +I V E  D           +       R  DL  LL  L  RGV S+L+EGG  
Sbjct: 240 --APTLIAVGEGADTGHLPGVDTVVLPAAPGPGRGLDLHALLAELSARGVRSVLLEGGPT 297

Query: 298 VAHSFINSRLVDSIILY 314
           +A +F+ +R VD +I Y
Sbjct: 298 LAGAFVAARAVDKVIGY 314


>gi|255009912|ref|ZP_05282038.1| putative riboflavin biosynthesis protein [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Bacteroides fragilis 3_1_12]
 gi|313147700|ref|ZP_07809893.1| riboflavin biosynthesis protein ribD [Bacteroides fragilis 3_1_12]
 gi|313136467|gb|EFR53827.1| riboflavin biosynthesis protein ribD [Bacteroides fragilis 3_1_12]
          Length = 346

 Score =  166 bits (420), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 121/356 (33%), Positives = 184/356 (51%), Gaps = 24/356 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + ++M   ++ +R  +   S NP V  +IV D  +IG G     G  HAEV A+    + 
Sbjct: 3   EEKYMRRCIQLARNGLCNVSPNPMVGAVIVCDEQIIGEGYHVRCGEAHAEVNAIRSVKDP 62

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG- 123
           +  + +T YV+LEPCSH+G++PPCA  IIE  I ++V+   DP  +V+G+G+Q L   G 
Sbjct: 63  SLLKRSTIYVSLEPCSHHGKTPPCADLIIEKQIPKIVIGCQDPFSKVAGKGIQKLRNAGR 122

Query: 124 -IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISK 180
            +IV  ++E E +  +  ++T     R +I LK A S D  I +      P+  +  ++ 
Sbjct: 123 EVIVG-VLEKECRELIQKFITFHTLHRPYIVLKWAESADGFIDLERTEGHPVLLSTPLTS 181

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             VH  RA+SDAI+VG  T L DDP LT R      H+P+RI LD +  L   S ++  +
Sbjct: 182 MLVHKKRAESDAIMVGTRTALLDDPALTVR--HWYGHNPVRIALDRNHSLPQTSHLLDGS 239

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAV 298
           +  P +I TE   P       KKN+  I  D +   L ++L  L  R + SL+VEGG  +
Sbjct: 240 V--PTLIFTECHRP------GKKNLEYIPLDYQTDILPQILATLYQRNLQSLMVEGGKIL 291

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDV 350
             SFI S + D II+ RS   +   G+ +P     +    EK+F    R Y   + 
Sbjct: 292 LESFICSGIWDEIIIERSDKRL-YSGVKAPEISDKISYSEEKHFATTFRHYLKRNT 346


>gi|296126557|ref|YP_003633809.1| riboflavin biosynthesis protein RibD [Brachyspira murdochii DSM
           12563]
 gi|296018373|gb|ADG71610.1| riboflavin biosynthesis protein RibD [Brachyspira murdochii DSM
           12563]
          Length = 368

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 115/330 (34%), Positives = 175/330 (53%), Gaps = 11/330 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL---EEAGE 65
           ++M  A+  ++   G TS NP V  +IVKD  +IG G     G  HAE+ A    ++ GE
Sbjct: 8   KYMRMAIEEAKKGEGFTSPNPLVGAVIVKDDKIIGIGYHQKYGENHAEINAFLDAQKKGE 67

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +  GA  YVTLEPCSHYG++PPCA  II+  I++V++   D + +V+G G++ L   GI 
Sbjct: 68  DVEGAAIYVTLEPCSHYGKTPPCADAIIKNKIKKVIIGCVDSNPKVAGNGIKKLKDAGIE 127

Query: 126 VDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   +  E  +     +      KR  + +K A++ D  I  +   S  IT   ++   H
Sbjct: 128 VVVNVLEEECRKLNEVFFYYIANKRPFVVMKYAMTIDGKIASSSGKSKWITSEKAREHSH 187

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             R +  AI+VGI TV+ D+P L CRL   +  +P+RIILD   K+ L+S I KTA    
Sbjct: 188 RFRNKYSAIMVGINTVIEDNPTLNCRLPNTR--NPIRIILDSSLKIDLNSNICKTAKEIK 245

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTIL-VGRGVTSLLVEGGAAVA 299
             I T ++D           I II  +      +LK+L+ IL   + + S+ VEGGA++ 
Sbjct: 246 TFIATISNDEKKIKEIESLGIEIIKTESDNGRVNLKELMKILGEDKNIDSVYVEGGASLH 305

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
            S I  RLV+ +++Y +  + G     SP+
Sbjct: 306 ASLIEERLVNKVLVYIAPKIFGGIKAKSPI 335


>gi|226306507|ref|YP_002766467.1| riboflavin biosynthesis bifunctional protein RibG [Rhodococcus
           erythropolis PR4]
 gi|226185624|dbj|BAH33728.1| riboflavin biosynthesis bifunctional protein RibG [Rhodococcus
           erythropolis PR4]
          Length = 350

 Score =  166 bits (419), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 119/307 (38%), Positives = 157/307 (51%), Gaps = 35/307 (11%)

Query: 23  GLTSTNPSV-ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G TS NP V A ++  DG + G G+T   G PHAEV AL+EAG+ ARG TA VTLEPC+H
Sbjct: 28  GFTSPNPPVGAVILAADGTIAGVGMTQPPGGPHAEVVALDEAGDAARGGTAVVTLEPCNH 87

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD---RMMESEGKIFL 138
            GR+ PC+Q +I+ G+  VV  V DP+   SG G   L + GI V    R  E E    L
Sbjct: 88  QGRTGPCSQALIDAGVSAVVYAVGDPNPEASG-GAATLMRAGISVTAGLRAPEVEAGP-L 145

Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIG 198
            A+L +Q   R HIT K A S D         S  ITG  ++ +VH  RAQ DAI+VG G
Sbjct: 146 RAWLHKQRTGRPHITWKYAASLDGRSAAEDGTSQWITGPQARARVHAQRAQIDAIVVGTG 205

Query: 199 TVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
           TV ADDP LT R     L  H P+R+++          +I  TA +         DD   
Sbjct: 206 TVFADDPWLTARQPTGELAAHQPVRVVVG-------KREIPSTASVL--------DDTAP 250

Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
            L     NI+ +     +             T +L+EGG  +A +F+ +  VD I  Y +
Sbjct: 251 TLVLNTDNIDEVVEALGEY------------TDVLLEGGPRLAGAFLAAGYVDVIEAYIA 298

Query: 317 QIVIGEG 323
            I++G G
Sbjct: 299 PILLGAG 305


>gi|326388321|ref|ZP_08209917.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207053|gb|EGD57874.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 321

 Score =  166 bits (419), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 117/318 (36%), Positives = 157/318 (49%), Gaps = 40/318 (12%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DA +M +A   +     L+  NP+V  ++V++  V+GRG T  GG PHAE +AL  AG+ 
Sbjct: 4   DADWMRSAAALAARGRPLSRPNPAVGAVLVRENRVVGRGFTRAGGRPHAEAEALAMAGDA 63

Query: 67  ARGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            RGAT YVTLEPC+H   R P CA  ++     RVVV   DPD R +G+G+  L   GI 
Sbjct: 64  TRGATLYVTLEPCAHVSPRGPACADLVVAARPARVVVGCTDPDPRTAGQGIARLRDAGIA 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           VD +     +  L  YL R  E R  +TLK+A S D  I +    S  ITG  ++   H 
Sbjct: 124 VDLIDCPAARASLAGYLRRTREGRPEVTLKLATSLDGRIALPSGESRWITGDAARAHAHA 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            RA++DAILVG GT+  D P L  RL GL E SP+R +L      + D     + + AP 
Sbjct: 184 ERARADAILVGGGTLRIDAPRLDVRLPGLAERSPLRWVL--TRGTAPDGWSAVSDITAPG 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
                 DD                                    L VEGGA  A  F+  
Sbjct: 242 AF----DD---------------------------------AQYLFVEGGAQAAAHFLAV 264

Query: 306 RLVDSIILYRSQIVIGEG 323
            +VD ++LYR+ I+IG+G
Sbjct: 265 DMVDRLLLYRAPILIGDG 282


>gi|28210395|ref|NP_781339.1| riboflavin biosynthesis protein [Clostridium tetani E88]
 gi|28202832|gb|AAO35276.1| riboflavin biosynthesis protein [Clostridium tetani E88]
          Length = 380

 Score =  166 bits (419), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 108/331 (32%), Positives = 177/331 (53%), Gaps = 6/331 (1%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D  +M  A+  +    G  + NP V  +IVKDG +IG G     G  HAE++A +   
Sbjct: 20  NLDEIYMKRAIELAHLGEGYVNPNPLVGAVIVKDGRIIGEGYHKKFGEAHAEIEAFKSCK 79

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E+ +G T YV LEPCSHYG++PPC   II+ GI++V++ + DP+  V+GRGL+ L +  I
Sbjct: 80  EDPKGGTLYVNLEPCSHYGKTPPCVDVIIKKGIKKVIIGMKDPNPLVAGRGLEILKKANI 139

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V    +E E +     ++     K+    LK A + D  I  +   S  ITG  S+  V
Sbjct: 140 EVRVGTLEDECRNLNEIFIKYITYKKPFCILKWASTLDGKICSSIGDSRWITGEDSREYV 199

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           HL+R +  +I+VG+ T+L D+P LT RL   +  +P RII+D   +  LD++I K     
Sbjct: 200 HLIRNKVSSIMVGVNTILRDNPSLTTRLKDRKGVNPTRIIVDSKGRTPLDARIFKEEGDT 259

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299
            +   ++ +D  +   F K    II    +    DL+ L+  L    + S+L+EGG  + 
Sbjct: 260 FIATTSQIEDKKIK-EFEKVGAKIIIIPEKGRKVDLQYLVNYLTKLNIDSILLEGGGTLN 318

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           +S +   +VD ++++ +  ++G     +P+E
Sbjct: 319 YSALKEGIVDKVLMFLAPKILGGENSKTPIE 349


>gi|229493689|ref|ZP_04387474.1| riboflavin biosynthesis protein RibD [Rhodococcus erythropolis
           SK121]
 gi|229319650|gb|EEN85486.1| riboflavin biosynthesis protein RibD [Rhodococcus erythropolis
           SK121]
          Length = 350

 Score =  165 bits (418), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 118/307 (38%), Positives = 157/307 (51%), Gaps = 35/307 (11%)

Query: 23  GLTSTNPSV-ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G TS NP V A ++  DG + G G+T   G PHAEV AL+EAG+ ARG TA VTLEPC+H
Sbjct: 28  GFTSPNPPVGAVILAADGTIAGVGMTQPPGGPHAEVVALDEAGDAARGGTAVVTLEPCNH 87

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD---RMMESEGKIFL 138
            GR+ PC+Q +I+ G+  VV  V DP+   SG G   L + GI V    R  E E    L
Sbjct: 88  QGRTGPCSQALIDAGVSAVVYAVGDPNPEASG-GAATLMRAGISVTAGLRAPEVEAGP-L 145

Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIG 198
            A+L +Q   R HIT K A S D         S  ITG  ++ +VH  RAQ DAI+VG G
Sbjct: 146 RAWLHKQRTGRPHITWKYAASLDGRSAAEDGTSQWITGPQARARVHAQRAQIDAIVVGTG 205

Query: 199 TVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
           TV ADDP LT R     L  H P+R+++          +I  TA +         DD   
Sbjct: 206 TVFADDPWLTARQPTGELAAHQPVRVVVG-------KREIPSTASIL--------DDTAP 250

Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
            L     N++ +     +             T +L+EGG  +A +F+ +  VD I  Y +
Sbjct: 251 TLVLNTDNVDEVVEALGEY------------TDVLLEGGPRLAGAFLAAGYVDVIEAYIA 298

Query: 317 QIVIGEG 323
            I++G G
Sbjct: 299 PILLGAG 305


>gi|91225069|ref|ZP_01260291.1| riboflavin-specific deaminase [Vibrio alginolyticus 12G01]
 gi|91190012|gb|EAS76283.1| riboflavin-specific deaminase [Vibrio alginolyticus 12G01]
          Length = 375

 Score =  165 bits (418), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 117/336 (34%), Positives = 170/336 (50%), Gaps = 28/336 (8%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   MS A++ ++  +  T+ NP+V C+IV+D  ++G G     G PHAEV A+  A
Sbjct: 11  SDLDFAMMSRAIKLAKRGIYTTAPNPNVGCVIVRDEEIVGEGYHHRAGEPHAEVHAMRMA 70

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE+A GATAYVTLEPCSHYGR+PPCA+ +I+  + RVV  + DP+ +V+GRG+Q L   G
Sbjct: 71  GEKAVGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMVDPNPKVAGRGIQMLRDAG 130

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++E +       ++         + LK+A S D    ++   S  IT   ++  
Sbjct: 131 IEVQIGLLEQDALALNPGFIKYMRTGMPFVQLKMAASLDGQSALSNGQSQWITSPAARQD 190

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNG---------LQEH--SPMRIILDPHFKLS 231
           V   RA S  IL    TV+ D+  L  R +          LQE    P+R+ILD    L+
Sbjct: 191 VQRYRAISGGILSTSKTVIDDNASLNVRWDDLPNSVQAQYLQEELRQPVRVILDRQNHLT 250

Query: 232 LDSKIIKTALLAPVIIVTENDD--PVLALAFRKKNINIIYCDCRDLKKLLT-ILVGRGVT 288
              K+  T      +IV  + D  P+L  A           D  DL   L  I     + 
Sbjct: 251 DALKLFHTD--GERVIVRSDGDCIPLLDSA-----------DQIDLSTTLKRISDEHHIN 297

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            L VE GA +A + I + LVD +I+Y +  ++G  G
Sbjct: 298 HLWVEAGATLASAMIKANLVDELIVYLAPKLMGSDG 333


>gi|54307992|ref|YP_129012.1| putative pyrimidine deaminase/pyrimidine reductase [Photobacterium
           profundum SS9]
 gi|46912418|emb|CAG19210.1| Putative pyrimidine deaminase/pyrimidine reductase [Photobacterium
           profundum SS9]
          Length = 371

 Score =  165 bits (418), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 113/334 (33%), Positives = 176/334 (52%), Gaps = 20/334 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           SS D   M  A+  ++     T+ NP+V C+I +   ++G G     G PHAEV AL  A
Sbjct: 3   SSIDHSMMLRAIELAKRGRFTTAPNPNVGCIIAQGATIVGEGFHYQAGQPHAEVFALRAA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE+A+GATAYVTLEPCSH+GR+PPCAQ +I   + RVV  + DP+ +V GRG++ L   G
Sbjct: 63  GEQAKGATAYVTLEPCSHFGRTPPCAQALINANVSRVVCAMVDPNPKVGGRGIEMLKIAG 122

Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++ ++ +     ++ R      ++ LK+A S D    ++   S  ITG  ++  
Sbjct: 123 IEVQTGLLAADAQALNFGFIKRMKTGLPYVQLKLAASLDGRTALSNGESKWITGPEARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLS 231
           V   RA++ AIL    TV+ADDP L  R + L E             P R+I+D   +++
Sbjct: 183 VQRFRARAGAILSTSSTVIADDPSLNVRWSELGEPVKAEYPETALRQPTRVIIDSKNRVT 242

Query: 232 LDSKIIK---TALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
            D K+       LLA   +  E   D V  +   K++ +    +  +L  L+  L  + +
Sbjct: 243 PDFKLFSLEGETLLARAEMGQETWPDSVTQVLIPKQDDS----EQLNLTSLMLELAKQDI 298

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
             + VE GA +A   + + LVD +ILY++  ++G
Sbjct: 299 NHIWVEAGAELAGGLLAAGLVDELILYQAPKLMG 332


>gi|15605463|ref|NP_220249.1| riboflavin deaminase [Chlamydia trachomatis D/UW-3/CX]
 gi|237805081|ref|YP_002889235.1| Riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311561|ref|ZP_05354131.1| Riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis 6276]
 gi|255317862|ref|ZP_05359108.1| Riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis 6276s]
 gi|13633735|sp|O84735|RIBD_CHLTR RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
           RecName:
           Full=Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase; Includes: RecName:
           Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|3329187|gb|AAC68325.1| Riboflavin Deaminase [Chlamydia trachomatis D/UW-3/CX]
 gi|231273381|emb|CAX10296.1| Riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|296436276|gb|ADH18450.1| Riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis G/9768]
 gi|296437205|gb|ADH19375.1| Riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis G/11222]
 gi|296438136|gb|ADH20297.1| Riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis G/11074]
 gi|297140637|gb|ADH97395.1| Riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis G/9301]
          Length = 375

 Score =  165 bits (418), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 107/322 (33%), Positives = 160/322 (49%), Gaps = 5/322 (1%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  A+            NP V C+IVK+G VIG G     G PHAEV A+++      G
Sbjct: 11  FMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQDQKCSLEG 70

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           A  +VTLEPC H+GR+PPC   +I+  +  V V + DPD RV  +G+  L   GI V   
Sbjct: 71  AEVFVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAAGIPVYVG 130

Query: 130 MES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + S E K  L  YL ++      + +K A S D      G  S  I+G +++  V  LRA
Sbjct: 131 VGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARADVGKLRA 190

Query: 189 QSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           +S AI+VG  TV  D+P L+ R     L E  P+R+++D    + L+S++   +  + + 
Sbjct: 191 ESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDLSSGSTLF 250

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
             T+          +   + +        DLK LL  L  RG   +LVEGGA +  +F  
Sbjct: 251 ATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLAERGCLQVLVEGGAQLHSAFWQ 310

Query: 305 SRLVDSIILYRSQIVIGEGGIP 326
            +LV++ ++Y     +G+ G P
Sbjct: 311 QKLVNAGVIYWGPKFLGDQGQP 332


>gi|325977849|ref|YP_004287565.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|325177777|emb|CBZ47821.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 351

 Score =  165 bits (418), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 124/357 (34%), Positives = 183/357 (51%), Gaps = 21/357 (5%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAGEEA 67
           +M+ A+  ++     T TNP V  +IVK+G VI RG     G  HAE  A+   EA EE 
Sbjct: 5   YMAQAIAEAKKGFRQTYTNPLVGAVIVKNGRVIARGAHLQYGHEHAEKNAILYCEAPEEL 64

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
             +T YVTLEPC H G+ PPC Q I+E GI++VVV   DP+  V+G+GL++L  +GI +V
Sbjct: 65  ANSTLYVTLEPCHHTGKQPPCTQAIVEAGIKKVVVGQLDPNPLVAGKGLEFLKSQGIEVV 124

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
            +++E+E +     Y      KR ++ LK AVS D  I + G  +  +T   +   VH  
Sbjct: 125 TQVLENEARALNPHYNFYHEHKRPYVVLKQAVSLDGKIAVLGKRTA-LTDDETNRFVHDE 183

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALLAP 244
           R    AILVG  TVL D+P+L     G   + P+R+ILD   ++    + +I K    AP
Sbjct: 184 RDDYQAILVGADTVLIDNPQLFGA--GTSLYPPVRVILDETGRIFDKRELQIFKNQ-SAP 240

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           V I +        +A    +I +I      +  +L  L  + + S+ VEGGA V  +F+ 
Sbjct: 241 VYIFSRRQ-----VANLPAHITVIALSNFSIANILQALYEKKIQSVYVEGGAQVHDAFLA 295

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           S L D +I Y +  VIG  G  +      +E+ +          D  ++ IG NL L
Sbjct: 296 SDLWDELISYVTPKVIGGNGRAAIASSRQVEQVYDL-------QDFSVQTIGTNLRL 345


>gi|86159164|ref|YP_465949.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775675|gb|ABC82512.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 392

 Score =  165 bits (418), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 122/323 (37%), Positives = 175/323 (54%), Gaps = 9/323 (2%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           RFM  ALR +   +G TS NP+V  ++V+DG V+GRG  A  G PHAEV AL  AG  AR
Sbjct: 27  RFMRLALREAARGLGRTSPNPAVGAVVVRDGRVVGRGHHARAGGPHAEVVALRAAGALAR 86

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GA  Y TLEPC H+G++PPC+  ++E G+RRV V   DP+  V+GRG+  L + G+ +V 
Sbjct: 87  GADVYTTLEPCDHFGKTPPCSVALLEAGVRRVFVGSSDPNPLVNGRGMARLRRSGVAVVK 146

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++  +       + T   E+R  +TLK AV+ D  I      +  ++G  ++  VH LR
Sbjct: 147 GVLRDDCDRLNAPWFTFITERRPFVTLKAAVTLDGRIATRTGDARWVSGEAARAWVHRLR 206

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DA+LVG GT  ADDP LT RL       P+R++LD    L     + +    AP ++
Sbjct: 207 DRVDAVLVGAGTARADDPRLTTRLP-RGGRDPIRVVLDSDLSLPRTLALFRGGSPAPTLV 265

Query: 248 VTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
                 P          + ++ C       DL+ LL  L  RGV  LLVEGGA V   F+
Sbjct: 266 AHAAPAPARPYG---PGVELLRCRRGKGGVDLRDLLAKLAARGVAHLLVEGGAHVHARFL 322

Query: 304 NSRLVDSIILYRSQIVIGEGGIP 326
            + LVD + ++ +  + G  G+P
Sbjct: 323 EAGLVDRVAVFVAPKIAGGDGVP 345


>gi|237803160|ref|YP_002888354.1| Riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis B/Jali20/OT]
 gi|231274394|emb|CAX11189.1| Riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis B/Jali20/OT]
          Length = 375

 Score =  165 bits (418), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 107/322 (33%), Positives = 160/322 (49%), Gaps = 5/322 (1%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  A+            NP V C+IVK+G VIG G     G PHAEV A+++      G
Sbjct: 11  FMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQDQKCSLEG 70

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           A  +VTLEPC H+GR+PPC   +I+  +  V V + DPD RV  +G+  L   GI V   
Sbjct: 71  AEVFVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAAGIPVYVG 130

Query: 130 MES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + S E K  L  YL ++      + +K A S D      G  S  I+G +++  V  LRA
Sbjct: 131 VGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARADVGKLRA 190

Query: 189 QSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           +S AI+VG  TV  D+P L+ R     L E  P+R+++D    + L+S++   +  + + 
Sbjct: 191 ESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDLSSGSTLF 250

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
             T+          +   + +        DLK LL  L  RG   +LVEGGA +  +F  
Sbjct: 251 ATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLAERGCLQVLVEGGAQLHSAFWQ 310

Query: 305 SRLVDSIILYRSQIVIGEGGIP 326
            +LV++ ++Y     +G+ G P
Sbjct: 311 QKLVNAGVIYWGPKFLGDQGQP 332


>gi|163847753|ref|YP_001635797.1| riboflavin biosynthesis protein RibD [Chloroflexus aurantiacus
           J-10-fl]
 gi|222525619|ref|YP_002570090.1| riboflavin biosynthesis protein RibD [Chloroflexus sp. Y-400-fl]
 gi|163669042|gb|ABY35408.1| riboflavin biosynthesis protein RibD [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449498|gb|ACM53764.1| riboflavin biosynthesis protein RibD [Chloroflexus sp. Y-400-fl]
          Length = 391

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/317 (35%), Positives = 159/317 (50%), Gaps = 9/317 (2%)

Query: 22  VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           VG TS NP V  ++V+DG V+G G T   G PHAE  AL  AGE ARGA  Y TLEPC+ 
Sbjct: 25  VGRTSPNPPVGAVVVRDGQVVGLGATQPAGGPHAERIALAAAGERARGADLYTTLEPCTF 84

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF--LH 139
           YGR+PPC + II  GIRRV     DPD R+       L   GI V R+      +   L 
Sbjct: 85  YGRTPPCTEAIIAAGIRRVFFIAHDPDPRMGDGAAAVLQPAGIEVYRITTGAATVAGQLA 144

Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199
            +  R    R  +T K A++ D  I  A   S  IT   ++ QVH LR Q D I+VG+GT
Sbjct: 145 PFRCRVQCGRPLVTAKYAMTLDGRIATASGDSRWITDPAARAQVHRLRDQVDVIMVGVGT 204

Query: 200 VLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
           +  DDP+LT RL+    +   P+R+I+D   +  L +++++  L    +I     +P   
Sbjct: 205 IRNDDPQLTTRLDQHWREPRHPLRVIVDSRGQTPLHARVVRGDLPGQTLIACVQPEPAWL 264

Query: 258 LAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
            A + + + ++           L  LL  L   G   LLVEGGA +  +     L+D I 
Sbjct: 265 AAMQSRGVRVVQFPPDATGRVALAPLLHYLAHEGYNHLLVEGGAMLLGALHAECLIDEIW 324

Query: 313 LYRSQIVIGEGGIPSPL 329
            +    V+ +   P P+
Sbjct: 325 AFIGARVVNDALAPGPM 341


>gi|294777680|ref|ZP_06743131.1| riboflavin biosynthesis protein RibD [Bacteroides vulgatus PC510]
 gi|319640266|ref|ZP_07994991.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 3_1_40A]
 gi|294448748|gb|EFG17297.1| riboflavin biosynthesis protein RibD [Bacteroides vulgatus PC510]
 gi|317388041|gb|EFV68895.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 3_1_40A]
          Length = 350

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 115/350 (32%), Positives = 184/350 (52%), Gaps = 19/350 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D +++S  L+ +   +  T+ NP V  +IV    +IG G     G  HAEV A+    +E
Sbjct: 4   DEKYISRCLQLAYNGLCNTAPNPMVGAVIVYHDTIIGEGYHIRCGEAHAEVNAIRSVKDE 63

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
              + +T YV+LEPCSHYG++PPCA  IIE  I +VV+   DP  +V+GRG++ L + GI
Sbjct: 64  NLLKESTIYVSLEPCSHYGKTPPCADLIIEKRIPKVVIGCIDPFSQVAGRGIEKLRKAGI 123

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181
            V   ++E E +  +  ++T    KR +ITLK A S D  I +   G  PI  +  ++  
Sbjct: 124 EVTVGVLEEECRHLIRRFITFNTLKRPYITLKWAESADGFIDINRTGGKPIILSNPLTSM 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH  RA+ DAILVG  T L D+P L+ R N   +H P+R+++D    L  D ++    +
Sbjct: 184 LVHKKRAEHDAILVGRHTALLDNPSLSTR-NWYGKH-PVRLVIDKELTLPRDLELFNGKI 241

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTSLLVEGGAAVAH 300
              V        P     +   + N      +D L +++ +L  + + SLLVEGG+ +  
Sbjct: 242 KTFVFTRESPCQPNALTEYISLDFN------KDILPQIMEVLYQKKIQSLLVEGGSILLQ 295

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
           SFI+S L D   + ++ + +   GI +P     ++K    + + YFG ++
Sbjct: 296 SFIDSGLWDEAFIEKAPLRLN-NGIQAP----SIQKKHFKLNKIYFGREI 340


>gi|313835935|gb|EFS73649.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL037PA2]
 gi|314970655|gb|EFT14753.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL037PA3]
 gi|328906122|gb|EGG25897.1| riboflavin biosynthesis protein RibD [Propionibacterium sp. P08]
          Length = 331

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/297 (35%), Positives = 155/297 (52%), Gaps = 28/297 (9%)

Query: 28  NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87
           NP V C+IV D  VIG+G     G PHAE++AL +AG+ ARGATA VTLEPC+H GR+ P
Sbjct: 25  NPRVGCVIVADERVIGQGWHRGAGTPHAEIEALRQAGDGARGATAVVTLEPCNHTGRTGP 84

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT-RQV 146
           C+  +++ GI RVV+   DP+   SG G QWL   G+     +  E    L+A  T  Q+
Sbjct: 85  CSHALLDAGITRVVIAQPDPNPAASG-GEQWLRAHGVEAVTGVLGEKATTLNADWTFSQI 143

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
            +R  +  K A S D         S  ITG  +++QV L R++  AI++G GT LADDP 
Sbjct: 144 HRRPRVCWKYAASLDGRSAAPDGTSQWITGKEARHQVQLGRSRCGAIVIGTGTALADDPR 203

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
           L  RL G+    P+R++                        V   D P      R  +  
Sbjct: 204 LVVRLPGVTR-QPLRVV------------------------VGLRDLPA-DCHLRDDSAP 237

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            ++    D  ++L  L  RG+  + +EGG  +A +F+ + LVD +I + + +V+G+G
Sbjct: 238 TLHIRSHDPVEVLDQLWHRGIHRVWLEGGPRLAGAFLAADLVDEVIAHLAPMVLGDG 294


>gi|148544108|ref|YP_001271478.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Lactobacillus reuteri DSM 20016]
 gi|184153479|ref|YP_001841820.1| riboflavin biosynthesis protein [Lactobacillus reuteri JCM 1112]
 gi|148531142|gb|ABQ83141.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Lactobacillus reuteri DSM 20016]
 gi|183224823|dbj|BAG25340.1| riboflavin biosynthesis protein [Lactobacillus reuteri JCM 1112]
          Length = 352

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/324 (35%), Positives = 164/324 (50%), Gaps = 10/324 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEE-AG 64
           DA FM  A+  +      T  NP V  ++VK+G V+ RG T  YGG  HAE  A+ +   
Sbjct: 3   DAYFMQMAIAEAAKAGNETWKNPRVGAVVVKNGQVLARGHTHEYGGI-HAERDAIGKLTP 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           ++ +GAT YVTLEPC+HYG+ PPC+Q II+ GIRRVV+   DP   V+G+G+  L Q+ I
Sbjct: 62  KQGQGATLYVTLEPCNHYGKQPPCSQAIIDAGIRRVVIAETDPHKLVTGKGIATLQQQNI 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
           IV   +  E    L+ Y       +R  +TLK AVS D  +         IT       V
Sbjct: 122 IVKTGVLKEAAQALNPYYDFFYRYQRPWVTLKQAVSLDYRVAAEKGQRTAITNSAVAKMV 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-IKTALL 242
           H  R     IL+G  T + D+P L        +  P+RI+LD   +L  +  + + T   
Sbjct: 182 HTERGNFQGILIGSQTAIIDNPTLLT--TSPTKFPPVRIVLDRRGRLKDNPTLHLLTDGQ 239

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           AP  I TEN       A   K+I + Y     +  +L  L  + + S+ VEGG  V  +F
Sbjct: 240 APTWIFTENSSLQDQFA---KSIQVFYRRTWSINDILHELGRQEIQSVYVEGGPTVHQAF 296

Query: 303 INSRLVDSIILYRSQIVIGEGGIP 326
           +   L + +I Y +  ++GE G+P
Sbjct: 297 LRKGLFEELITYLAPQMLGEKGVP 320


>gi|314927222|gb|EFS91053.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL044PA1]
          Length = 331

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/297 (35%), Positives = 155/297 (52%), Gaps = 28/297 (9%)

Query: 28  NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87
           NP V C+IV D  VIG+G     G PHAE++AL +AG+ ARGATA VTLEPC+H GR+ P
Sbjct: 25  NPRVGCVIVADERVIGQGWHRGAGTPHAEIEALRQAGDGARGATAVVTLEPCNHTGRTGP 84

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT-RQV 146
           C+  +++ GI RVV+   DP+   SG G QWL   G+     +  E    L+A  T  Q+
Sbjct: 85  CSHALLDAGITRVVIAQPDPNPAASG-GEQWLRAHGVEAVTGVLGEKATTLNADWTFSQI 143

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
            +R  +  K A S D         S  ITG  +++QV L R++  AI++G GT LADDP 
Sbjct: 144 HRRPRVCWKYAASLDGRSAAPDGTSQWITGKEARHQVQLGRSRCGAIVIGTGTALADDPR 203

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
           L  RL G+    P+R++                        V   D P      R  +  
Sbjct: 204 LVVRLPGVPR-QPLRVV------------------------VGLRDLPA-DCHLRDDSAP 237

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            ++    D  ++L  L  RG+  + +EGG  +A +F+ + LVD +I + + +V+G+G
Sbjct: 238 TLHIRSHDPVEVLDQLWHRGIHRVWLEGGPRLAGAFLAADLVDEVIAHLAPMVLGDG 294


>gi|297748861|gb|ADI51407.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Chlamydia
           trachomatis D-EC]
 gi|297749741|gb|ADI52419.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Chlamydia
           trachomatis D-LC]
          Length = 400

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/322 (33%), Positives = 160/322 (49%), Gaps = 5/322 (1%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  A+            NP V C+IVK+G VIG G     G PHAEV A+++      G
Sbjct: 36  FMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQDQKCSLEG 95

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           A  +VTLEPC H+GR+PPC   +I+  +  V V + DPD RV  +G+  L   GI V   
Sbjct: 96  AEVFVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAAGIPVYVG 155

Query: 130 MES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + S E K  L  YL ++      + +K A S D      G  S  I+G +++  V  LRA
Sbjct: 156 VGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARADVGKLRA 215

Query: 189 QSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           +S AI+VG  TV  D+P L+ R     L E  P+R+++D    + L+S++   +  + + 
Sbjct: 216 ESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDLSSGSTLF 275

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
             T+          +   + +        DLK LL  L  RG   +LVEGGA +  +F  
Sbjct: 276 ATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLAERGCLQVLVEGGAQLHSAFWQ 335

Query: 305 SRLVDSIILYRSQIVIGEGGIP 326
            +LV++ ++Y     +G+ G P
Sbjct: 336 QKLVNAGVIYWGPKFLGDQGQP 357


>gi|227364534|ref|ZP_03848595.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Lactobacillus reuteri MM2-3]
 gi|325682351|ref|ZP_08161868.1| riboflavin specific deaminase [Lactobacillus reuteri MM4-1A]
 gi|227070371|gb|EEI08733.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Lactobacillus reuteri MM2-3]
 gi|324978190|gb|EGC15140.1| riboflavin specific deaminase [Lactobacillus reuteri MM4-1A]
          Length = 355

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/324 (35%), Positives = 164/324 (50%), Gaps = 10/324 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEE-AG 64
           DA FM  A+  +      T  NP V  ++VK+G V+ RG T  YGG  HAE  A+ +   
Sbjct: 6   DAYFMQMAIAEAAKAGNETWKNPRVGAVVVKNGQVLARGHTHEYGGI-HAERDAIGKLTP 64

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           ++ +GAT YVTLEPC+HYG+ PPC+Q II+ GIRRVV+   DP   V+G+G+  L Q+ I
Sbjct: 65  KQGQGATLYVTLEPCNHYGKQPPCSQAIIDAGIRRVVIAETDPHKLVTGKGIATLQQQNI 124

Query: 125 IVDRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
           IV   +  E    L+ Y       +R  +TLK AVS D  +         IT       V
Sbjct: 125 IVKTGVLKEAAQALNPYYDFFYRYQRPWVTLKQAVSLDYRVAAEKGQRTAITNSAVAKMV 184

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-IKTALL 242
           H  R     IL+G  T + D+P L        +  P+RI+LD   +L  +  + + T   
Sbjct: 185 HTERGNFQGILIGSQTAIIDNPTLLT--TSPTKFPPVRIVLDRRGRLKDNPTLHLLTDGQ 242

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           AP  I TEN       A   K+I + Y     +  +L  L  + + S+ VEGG  V  +F
Sbjct: 243 APTWIFTENSSLQDQFA---KSIQVFYRRTWSINDILHELGRQEIQSVYVEGGPTVHQAF 299

Query: 303 INSRLVDSIILYRSQIVIGEGGIP 326
           +   L + +I Y +  ++GE G+P
Sbjct: 300 LRKGLFEELITYLAPQMLGEKGVP 323


>gi|222111713|ref|YP_002553977.1| riboflavin biosynthesis protein ribd [Acidovorax ebreus TPSY]
 gi|221731157|gb|ACM33977.1| riboflavin biosynthesis protein RibD [Acidovorax ebreus TPSY]
          Length = 370

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/323 (34%), Positives = 167/323 (51%), Gaps = 11/323 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA---GE 65
           F+S AL  +   + L++ NP V C+I  D G V+G+G T   G PHAEV AL +A   G 
Sbjct: 7   FISQALGLAAQALFLSNPNPRVGCVITSDAGAVLGQGFTQQAGGPHAEVMALRDAAARGN 66

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           + RGATAYVTLEPC+H GR+ PC   +I+ GI RVV  V DP+  V+G+G   L   G+ 
Sbjct: 67  DVRGATAYVTLEPCAHQGRTGPCCDALIQAGIARVVASVADPNPLVAGQGFARLRAAGVA 126

Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V+     +E +     + +R V     + +K A S D +  +    S  IT   ++   H
Sbjct: 127 VEAGPGAAETRELNIGFFSRMVRGMPWVRMKAAASLDGVTALGNGASQWITSPAARADGH 186

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             RA++ A+L GIGTVL DDP L  R        P  +I+D   +    +++   A    
Sbjct: 187 AWRARACAVLSGIGTVLEDDPLLNVR-EVATPRQPHLVIVDSRLQTPPGARLFDVADRQ- 244

Query: 245 VIIVTENDDPVLALAFRKKNINIIYC-DCR---DLKKLLTILVGRGVTSLLVEGGAAVAH 300
           V+I     +   A A R +   ++   + R   DL  +L  L  R V  L VE G  +  
Sbjct: 245 VLIYAAQGEAQAAEALRARGATVVVLPNARGKVDLPAMLRDLARRSVNELHVEAGHKLNG 304

Query: 301 SFINSRLVDSIILYRSQIVIGEG 323
           SF+   LVD ++LY++ +++G G
Sbjct: 305 SFLREGLVDEMLLYQAPLLLGSG 327


>gi|306830959|ref|ZP_07464121.1| riboflavin biosynthesis protein RibD [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|304426982|gb|EFM30092.1| riboflavin biosynthesis protein RibD [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
          Length = 351

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 124/357 (34%), Positives = 183/357 (51%), Gaps = 21/357 (5%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAGEEA 67
           +M+ A+  ++     T TNP V  +IVK+G VI RG     G  HAE  A+   EA EE 
Sbjct: 5   YMAQAIAEAKKGFRQTYTNPLVGAVIVKNGRVIARGAHLQYGHEHAEKNAILYCEAPEEL 64

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
             +T YVTLEPC H G+ PPC Q I+E GI++VVV   DP+  V+G+GL++L  +GI +V
Sbjct: 65  ANSTLYVTLEPCHHTGKQPPCTQAIVEAGIKKVVVGQLDPNPLVAGKGLEFLKSQGIEVV 124

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
            +++E+E +     Y      KR ++ LK AVS D  I + G  +  +T   +   VH  
Sbjct: 125 TQVLENEARALNPHYNFYHEHKRPYVVLKQAVSLDGKIAVLGKRTA-LTDDETNRFVHDE 183

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALLAP 244
           R    AILVG  TVL D+P+L     G   + P+R+ILD   ++    + +I K    AP
Sbjct: 184 RDDYQAILVGADTVLIDNPQLFGA--GTSLYPPVRVILDETGRIFGKRELQIFKNQ-SAP 240

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           V I +        +A    +I +I      +  +L  L  + + S+ VEGGA V  +F+ 
Sbjct: 241 VYIFSRRQ-----VANLPAHITVIALSNFSIANILQALYEKKIQSVYVEGGAQVHDAFLA 295

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           S L D +I Y +  VIG  G  +      +E+ +          D  ++ IG NL L
Sbjct: 296 SDLWDELISYVTPKVIGGNGRAAIASSRQVEQVYDL-------QDFSVQTIGTNLRL 345


>gi|254392899|ref|ZP_05008067.1| riboflavin biosynthesis protein RibD [Streptomyces clavuligerus
           ATCC 27064]
 gi|197706554|gb|EDY52366.1| riboflavin biosynthesis protein RibD [Streptomyces clavuligerus
           ATCC 27064]
          Length = 379

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 115/310 (37%), Positives = 162/310 (52%), Gaps = 11/310 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  A+  +   +G TS NP V C+I    G + G G     G PHAEV AL  AG  ARG
Sbjct: 1   MRRAIELAARGLGSTSPNPVVGCVITDASGEIAGTGYHERAGGPHAEVHALRAAGTRARG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
            TAYVTLEPC H GR+ PC+Q ++  GI RVV  V DP+ + SG G   L   G+ V+  
Sbjct: 61  GTAYVTLEPCDHTGRTGPCSQALLAAGITRVVHAVADPNPQASG-GAGTLRAAGVRVECG 119

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++  E +    A+LT     R  +  K A + D  I      S  IT   ++  VH LRA
Sbjct: 120 LLGPEAEAVNAAWLTSVRLGRPQVVWKYAATLDGRIAAEDRSSRWITSPEARADVHRLRA 179

Query: 189 QSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            +DA+++G GT+  DDP+L  R + G  +  P+R++LD    ++  ++++  A  AP +I
Sbjct: 180 GADAVVIGSGTLRTDDPQLAVRGIEGAVQ--PLRVVLDSRATVTPAARVLDDA--APTLI 235

Query: 248 -VTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
            V E  D           +       R  DL  LL  L  RGV S+L+EGG  +A +F+ 
Sbjct: 236 AVGEGADTGHLPGVDTVVLPAAPGPGRGLDLHALLAELSARGVRSVLLEGGPTLAGAFVA 295

Query: 305 SRLVDSIILY 314
           +R VD +I Y
Sbjct: 296 ARAVDKVIGY 305


>gi|33593884|ref|NP_881528.1| putative riboflavin-specific deaminase [Bordetella pertussis Tohama
           I]
 gi|33563958|emb|CAE43220.1| putative riboflavin-specific deaminase [Bordetella pertussis Tohama
           I]
 gi|332383303|gb|AEE68150.1| putative riboflavin-specific deaminase [Bordetella pertussis CS]
          Length = 386

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/326 (34%), Positives = 172/326 (52%), Gaps = 14/326 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D  ++  AL  +R  +  T+ NP V C+IV+DG V+G G T   G PHAEV AL EA   
Sbjct: 9   DVSWIRRALALARSVMYSTAPNPRVGCVIVRDGQVLGEGATQPPGGPHAEVCALREAAAR 68

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G    GAT YVTLEPCSH+GR+PPC   ++     RVVV + DP+ RV+G+GL  L   G
Sbjct: 69  GASLAGATVYVTLEPCSHFGRTPPCVDALVAAAPARVVVAMGDPNPRVNGQGLARLRAAG 128

Query: 124 IIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   +  +  + L+A +  R       + LK+A S D    +    S  ITG  ++  
Sbjct: 129 IAVTEDVCRDEALELNAGFAARMSRGLPWVWLKLATSLDGRSALHNGVSQWITGEAARAD 188

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTAL 241
            H  RA+S  +L G+GTVL DDP+L  R   +Q  H P + ++D  F++  D+++     
Sbjct: 189 GHHWRARSGVVLTGMGTVLKDDPQLNAR--AVQTSHPPRKAVIDGRFEIPEDARLFDDG- 245

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGA 296
            A V+I T   D   A     +N  +I       D  DL  ++  L  + +  + VE GA
Sbjct: 246 -AQVLIFTARSDAAKARRMADRNARVIELPGVRPDRVDLPAVMRWLASQEINEVHVEAGA 304

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGE 322
            ++ + +    VD +++Y + +++G+
Sbjct: 305 GLSGALLAEDCVDELLVYLAPVLLGD 330


>gi|262340928|ref|YP_003283783.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Blattabacterium sp. (Blattella germanica)
           str. Bge]
 gi|262272265|gb|ACY40173.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Blattabacterium sp. (Blattella germanica)
           str. Bge]
          Length = 343

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/319 (31%), Positives = 165/319 (51%), Gaps = 15/319 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR- 68
           FMS A++ ++  +G+TS NP V C+I ++G +I  G     G  HAE  A+     ++  
Sbjct: 7   FMSRAIQLAKNGLGMTSPNPMVGCVIERNGFIISEGWHYKKGMDHAEAIAINRIKNKSLF 66

Query: 69  -GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
             +T YVTLEPC H+G + PC   II+  I R+VV + DP  +V G G+Q L + GI ++
Sbjct: 67  LDSTLYVTLEPCVHFGETSPCVDLIIKNHIPRIVVGIQDPHDKVKGLGIQKLKEYGIEVI 126

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
           + +++++ +     + T   + R +I LK A S D  IG     ++ I+G  ++   H  
Sbjct: 127 ENVLKNKCRFLNKRFFTFHEKNRPYIILKWAQSHDGFIGSENKKNIWISGTYARQLNHKW 186

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA+ D+ILVG  TVL D+P+L  R       +P+RI +D   K+S DS  I       ++
Sbjct: 187 RAEEDSILVGRKTVLNDNPKLNVR--EWFGSNPIRIFIDKKLKIS-DSHFILDGTQKTIV 243

Query: 247 IVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
              +  +        +KNI  I    + + +  +L  L  + + SL+VEGG     SFI 
Sbjct: 244 FTEKKKE-------NQKNIEYIQISFEGKIINHILNFLYKKNILSLIVEGGKKTLESFIK 296

Query: 305 SRLVDSIILYRSQIVIGEG 323
             + D   ++   + + +G
Sbjct: 297 ENVWDECRIFVCDVTLKKG 315


>gi|194333661|ref|YP_002015521.1| riboflavin biosynthesis protein RibD [Prosthecochloris aestuarii
           DSM 271]
 gi|194311479|gb|ACF45874.1| riboflavin biosynthesis protein RibD [Prosthecochloris aestuarii
           DSM 271]
          Length = 373

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/361 (32%), Positives = 180/361 (49%), Gaps = 18/361 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M   L  +R   GL S NP V  +IV +  V+G G     G PHAEV AL    + 
Sbjct: 11  DEYYMHRCLELARKGAGLVSPNPMVGSVIVVEDRVVGEGFHERYGGPHAEVNALASVSDA 70

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +    +T YV LEPCSHYG++PPC+  II   IRRVVV   DP  +V+G+G++ L Q G+
Sbjct: 71  SLLPSSTLYVNLEPCSHYGKTPPCSDLIISKKIRRVVVGCLDPHEKVAGKGIEKLRQAGV 130

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V   +++ E +    A++         + LK A + D  I +A   S  +TG  S+ +V
Sbjct: 131 EVTIGVLQRESEALNEAFIKSHTISMPFVVLKTAQTIDGRIAVASGESKWVTGAESRREV 190

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H +R+  DA++    TV+AD+  LT R    +  +P+R++LD   ++ L S I      A
Sbjct: 191 HRMRSVHDAVMTTSSTVIADNSRLTVR--HCEGRNPVRVVLDRLLRVPLSSAIFDGE--A 246

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYC------DCRDLKKLLTILVG-RGVTSLLVEGGA 296
             I+ T N       A   K + +I C      D  DL  +L  L     + S++VE G 
Sbjct: 247 KTILYTSNALGSSEKARALKAMGVIVCAAGDDGDFLDLSAVLKSLHDEHALLSIMVEAGG 306

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR----DYFGSDVCL 352
            +A + I  RLVD I+ + +  + G  G+ +    G    +   V R     + G+D+C+
Sbjct: 307 TLAGALIRHRLVDRIVWFVAPKLFGADGLGAVGSLGLQSVDDAPVMRFSSSRFLGNDLCI 366

Query: 353 E 353
           E
Sbjct: 367 E 367


>gi|167586436|ref|ZP_02378824.1| riboflavin biosynthesis protein RibD [Burkholderia ubonensis Bu]
          Length = 257

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 99/244 (40%), Positives = 140/244 (57%), Gaps = 7/244 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +   +  T+ NP V C+IVKDG VIG G T   G  HAEVQAL++A
Sbjct: 3   SDTDFAHMQRALALAARGMYTTTPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G +  G+T YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L 
Sbjct: 63  RSRGHDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++  E       +++R    R  + +K A S D    +    S  ITG  +
Sbjct: 123 DAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGDDA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238
           +   H  RA++ AIL GIGTV  DDP+LT R  G+     P R+++D   +L LD+++++
Sbjct: 183 RLDGHAWRARACAILTGIGTVREDDPQLTVR--GIDTPRQPRRVLVDSRLELPLDARLLE 240

Query: 239 TALL 242
            A L
Sbjct: 241 GAPL 244


>gi|168025673|ref|XP_001765358.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683411|gb|EDQ69821.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 393

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 184/342 (53%), Gaps = 34/342 (9%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           +  DA +M   +  +R  VG TS NP V C+IVKDG ++GRG     G PHAEV AL EA
Sbjct: 25  TEVDAFYMRMCVDLARQAVGKTSPNPIVGCVIVKDGRIVGRGFHPKAGEPHAEVFALREA 84

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G  A+GATAYV+LEPC+HYGR+PPC+Q +++  ++RVVV V DP+ +V G+G++ L   G
Sbjct: 85  GPLAQGATAYVSLEPCNHYGRTPPCSQALVKAKLKRVVVGVVDPNPQVGGKGIKTLRNAG 144

Query: 124 IIVDRMMESEGKIFLHA---YLTRQVEKRSHITLKIAVSQD-NMIGMAGCGSVPITGFIS 179
           I V  ++  E  + L A   ++ R    R  +TL+ ++S D   +G  G  +    G  S
Sbjct: 145 IEV--VVGVEETLCLKANESFMHRMATGRPFVTLRYSMSMDGGFLGNMGLSNAQ-GGLYS 201

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           K     L  ++DA+++    VL DDP+L     G ++  P+R+IL     L ++SK+  T
Sbjct: 202 K-----LLQENDAVVITDAAVL-DDPDLLSSEPGAKQ--PLRVILARSLDLPVESKVFDT 253

Query: 240 ALLAPVIIVTEN-----------DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           +    +++  +            D   +    R   ++++  +   L+ +L++    G T
Sbjct: 254 SYAKTLVLADQKSCIDDIQRKSADGKSIEARLRAGGVDVVMMNDLTLENVLSVCYQLGAT 313

Query: 289 SLLVEGGAAVA---HSFINSRLVD-----SIILYRSQIVIGE 322
           S+L++    V+    +F+  + +D      +++  + I +GE
Sbjct: 314 SVLLDSRGPVSSGLENFLGQQALDEEAAQKVVVQVAPIFLGE 355


>gi|301336274|ref|ZP_07224476.1| riboflavin-specific deaminase [Chlamydia muridarum MopnTet14]
          Length = 368

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 105/322 (32%), Positives = 163/322 (50%), Gaps = 5/322 (1%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  A+            NP V C+IVK+G VIG G     G PHAEV A++++     G
Sbjct: 11  FMRKAVALGERGRLFAPPNPWVGCVIVKNGCVIGEGWHKGIGFPHAEVCAIQDSPCSLEG 70

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           A  YVTLEPC H+GR+PPC   +I+  +  V V + DPD RV  +G+  L + GI V   
Sbjct: 71  AEVYVTLEPCCHFGRTPPCVDLLIKSKVAAVYVALLDPDPRVCKKGIARLREAGIPVYVG 130

Query: 130 MES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + S E +  L  YL ++      + +K A S D         S  I+G +++  V  LRA
Sbjct: 131 IGSKEAQASLQPYLHQRETGLPWVVMKTAASLDGQTADREGRSQWISGELARADVGKLRA 190

Query: 189 QSDAILVGIGTVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           +S A++VG  TV  D+P L+ R  L  L E  P+R+++D   K+ LD+++  +     ++
Sbjct: 191 ESQAVIVGSRTVCLDNPRLSARQALGNLYERQPLRVVIDSLGKVPLDARVWNSDSGKSLL 250

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
             TE              + +     +  DL++LL  L  +G   +L+EGGA +  +F  
Sbjct: 251 ATTEQCSLEYMQRLEDLGVEVWQSSSQQVDLRELLQTLAAKGCLQVLIEGGAQLHSAFWK 310

Query: 305 SRLVDSIILYRSQIVIGEGGIP 326
             LV++ ++Y     +G+ G P
Sbjct: 311 EHLVNAGVIYWGPKFLGDQGSP 332


>gi|262196460|ref|YP_003267669.1| riboflavin biosynthesis protein RibD [Haliangium ochraceum DSM
           14365]
 gi|262079807|gb|ACY15776.1| riboflavin biosynthesis protein RibD [Haliangium ochraceum DSM
           14365]
          Length = 367

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 116/334 (34%), Positives = 172/334 (51%), Gaps = 14/334 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M+  L  +R   G T+ NP V C+IV   G VI  G     G PHAE +AL +    A G
Sbjct: 1   MARCLELARRAEGRTAPNPMVGCVIVAPSGEVIAEGYHRRAGAPHAEAEALAQLDGRAPG 60

Query: 70  ATAYVTLEPCSHYG--RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            T YV LEPC H    R+ PCA  + E GI R+VV + DP +R    G  WL+++G+ V 
Sbjct: 61  CTMYVNLEPCRHRRKRRTVPCAPAVAEAGIARLVVGMGDP-IRSHAGGAAWLARQGVSVT 119

Query: 128 R-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
           R ++ ++ +     ++TR  + R    LK A++ D  +      S  ITG  ++   H L
Sbjct: 120 RGVLRADCRDLNRGFITRARKGRPWFALKAAMTLDGKVATRTGDSQWITGPQARAHGHGL 179

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP-- 244
           R + DA+LVGIGTVLADDP LT R        P+R+++D   +  LD++++     +P  
Sbjct: 180 RDRLDAMLVGIGTVLADDPRLTAR-GARDARDPVRVVVDSRLRTPLDARLLPANTSSPAR 238

Query: 245 VIIVTENDDPVL---ALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAH 300
            II      P      LA     +  +    R DL+ L   L    + ++LVEGGA +  
Sbjct: 239 TIIAASERAPRTRERRLADAGAEVWRVGAGPRVDLEALAQRLAAAELNTVLVEGGAELHA 298

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
           +F+ + L D ++LY + +V+G  G  S L  G+L
Sbjct: 299 AFVAADLADELLLYVAPMVLGGRGRDSGL--GWL 330


>gi|288904903|ref|YP_003430125.1| riboflavin-specific deaminase [Streptococcus gallolyticus UCN34]
 gi|288731629|emb|CBI13184.1| riboflavin-specific deaminase [Streptococcus gallolyticus UCN34]
          Length = 351

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 122/360 (33%), Positives = 182/360 (50%), Gaps = 27/360 (7%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAGEEA 67
           +M+ A+  ++     T TNP V  +IVK+G VI RG     G  HAE  A+   EA EE 
Sbjct: 5   YMAQAIAEAKKGFRQTYTNPLVGAVIVKNGRVIARGAHLQYGHEHAEKNAILHCEAPEEL 64

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
             +T YVTLEPC H G+ PPC Q I+E GI++VVV   DP+  V+G+GL++L  +GI +V
Sbjct: 65  TNSTLYVTLEPCHHTGKQPPCTQAIVEAGIKKVVVGQLDPNPLVAGKGLEFLKSQGIEVV 124

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
            +++E+E +     Y      KR ++ LK AVS D  I + G  +  +T   +   VH  
Sbjct: 125 TQVLENEARALNPHYNFYHEHKRPYVVLKQAVSLDGKIAVLGKRTA-LTDDETNRFVHDE 183

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R    AILVG  TVL D+P+L     G   + P+R+ILD   ++  D + ++        
Sbjct: 184 RDDYQAILVGADTVLIDNPQLLGA--GTTLYPPVRVILDEIGRI-FDKRELQ-------- 232

Query: 247 IVTENDDPVLALAFRK-----KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           I      PV   + R+      +I +I      +  +L  L  + + S+ VEGGA V  +
Sbjct: 233 IFKNQSAPVYIFSRRQVTNLPAHITVIALSNFSIANILQALYEKKIQSVYVEGGAQVHDA 292

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           F+ S L D +I Y +  VIG  G  +      +E+ +          D  ++ IG NL L
Sbjct: 293 FLASDLWDELISYMTPKVIGGNGRAAIASSRQVEQVYDL-------QDFSVQTIGTNLRL 345


>gi|76789470|ref|YP_328556.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chlamydia
           trachomatis A/HAR-13]
 gi|76168000|gb|AAX51008.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Chlamydia
           trachomatis A/HAR-13]
          Length = 375

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/322 (33%), Positives = 160/322 (49%), Gaps = 5/322 (1%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  A+            NP V C+IVK+G VIG G     G PHAEV A+++      G
Sbjct: 11  FMRKAVALGEKGRIFAPPNPWVGCVIVKNGGVIGEGWHQGIGSPHAEVCAVQDQKCSLEG 70

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           A  +VTLEPC H+GR+PPC   +I+  +  V V + DPD RV  +G+  L   GI V   
Sbjct: 71  AEVFVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAAGIPVYVG 130

Query: 130 MES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + S E K  L  YL ++      + +K A S D      G  S  I+G +++  V  LRA
Sbjct: 131 VGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARADVGKLRA 190

Query: 189 QSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           +S AI+VG  TV  D+P L+ R     L E  P+R+++D    + L+S++   +  + + 
Sbjct: 191 ESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDLSSGSTLF 250

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
             T+          +   + +        DLK LL  L  RG   +LVEGGA +  +F  
Sbjct: 251 ATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLAERGCLQVLVEGGAQLHSAFWQ 310

Query: 305 SRLVDSIILYRSQIVIGEGGIP 326
            +LV++ ++Y     +G+ G P
Sbjct: 311 QKLVNAGVIYWGPKFLGDQGQP 332


>gi|302871184|ref|YP_003839820.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574043|gb|ADL41834.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 371

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/313 (31%), Positives = 167/313 (53%), Gaps = 12/313 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
           + +M+ AL  ++    L   NP V C+IVK+G +IG+G     G  HAEV A+E+A   G
Sbjct: 7   SYYMNMALELAKKASPLVLPNPRVGCVIVKNGTIIGKGYHQKYGEKHAEVLAIEDAIKNG 66

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
              + AT YV+LEPC H+G+ PPC + II+ GI++V++   DP+  V+G+G+Q L Q GI
Sbjct: 67  NSLKNATMYVSLEPCCHFGKQPPCTEAIIKSGIKKVIIATRDPNPLVNGKGIQILKQHGI 126

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +V+ +++ E +     +     +   +I +K+A S D  I                  V
Sbjct: 127 EVVEGVLQKEAESVNKEFFKYMKKGIPYIAIKVAQSIDGKIATPSNKRFLFNTDDENVFV 186

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA-LL 242
           H LR +  A LV + TV++D+P L  R  G     P+R+++D + ++ L+  I+KT+   
Sbjct: 187 HSLRQKYMATLVSVNTVISDNPILNVRY-GEIIRQPIRVVIDTNLRIPLECNIVKTSDEY 245

Query: 243 APVIIVTEN-DDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296
           +  I+ +EN +D        +K I II+         +L  + + L  + + S+LVEGG+
Sbjct: 246 STYIVCSENVNDTQKIKLLSQKGIKIIFAKQSEDGHLELSDVFSKLAQQKIISVLVEGGS 305

Query: 297 AVAHSFINSRLVD 309
            +  S +  R+ D
Sbjct: 306 MLNFSLLKKRIAD 318


>gi|153808975|ref|ZP_01961643.1| hypothetical protein BACCAC_03276 [Bacteroides caccae ATCC 43185]
 gi|149128308|gb|EDM19527.1| hypothetical protein BACCAC_03276 [Bacteroides caccae ATCC 43185]
          Length = 348

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/317 (34%), Positives = 168/317 (52%), Gaps = 19/317 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + ++M   +  ++  +   + NP V  +IV DG +IG G     G  HAEV A+    +E
Sbjct: 3   EEKYMRRCIELAKNGLCNAAPNPMVGAVIVCDGRIIGEGYHIRCGEAHAEVNAIRSVKDE 62

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG- 123
           +  + +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP  +V+GRG+Q L   G 
Sbjct: 63  SLLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSQVAGRGIQKLKDAGR 122

Query: 124 -IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISK 180
            +IV  ++ESE +  +  ++T     R +ITLK A S D+ I +      P+  +  ++ 
Sbjct: 123 EVIVG-VLESECRQLIRRFITFNTLHRPYITLKWAESADHFIDLERTDGQPVVLSSPLTS 181

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             VH  RA+S AI+VG  T L D+P LT R       +P+R++LD    L  D ++    
Sbjct: 182 MLVHKRRAESVAIMVGRRTALLDNPSLTVR--NWYGRNPIRVVLDRTLSLPNDLQLFDGN 239

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAV 298
           +  P ++ T N  P        KNI  I  D       +++  L  R + SLLVEGG+ +
Sbjct: 240 V--PTLVFTANKHP------EAKNITYITIDFNHNLFTQIMEELYQRKIQSLLVEGGSQL 291

Query: 299 AHSFINSRLVDSIILYR 315
             SFI + L D I + +
Sbjct: 292 LQSFIANELWDEIYIEK 308


>gi|312128288|ref|YP_003993162.1| riboflavin biosynthesis protein ribd [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778307|gb|ADQ07793.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 371

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/313 (32%), Positives = 164/313 (52%), Gaps = 12/313 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
           + +M+ AL  ++    L   NP V C+IVK+G +IG+G     G  HAEV A+E+A   G
Sbjct: 7   SYYMNMALELAKKASPLVLPNPRVGCVIVKNGTIIGKGYHQKYGEKHAEVLAIEDAIKNG 66

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
              + AT YV+LEPC H+G+ PPC + II+ GI++VV+   DP+  V+G+G+Q L Q GI
Sbjct: 67  YSLKNATMYVSLEPCCHFGKQPPCTEAIIKSGIKKVVIATRDPNPFVNGKGIQILKQHGI 126

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +V+ ++E E +     +         +I +K+A S D  I                  V
Sbjct: 127 EVVEGVLEKEAESINKDFFKYMKTGIPYIAIKVAHSIDGKIATPSNKRFLFNTEEENVFV 186

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA-LL 242
           H LR +  A LV + TV++D+P L  R  G     P+R++LD   ++  +  I+KT+   
Sbjct: 187 HSLRQKYMATLVSVNTVISDNPILNARY-GQIVRQPIRVVLDSKLRIPFECNIVKTSDEY 245

Query: 243 APVIIVTEN-DDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296
           +  I+ +EN +D        +K I II+         +L  + + L  + + S+LVEGG+
Sbjct: 246 STYIVCSENVNDTQKIDLLSQKGIKIIFAKSSEDGHLELSDVFSKLAQQKIVSVLVEGGS 305

Query: 297 AVAHSFINSRLVD 309
            +  S +  R+ D
Sbjct: 306 LLNFSLLKQRIAD 318


>gi|324999324|ref|ZP_08120436.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Pseudonocardia sp. P1]
          Length = 368

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/318 (35%), Positives = 165/318 (51%), Gaps = 28/318 (8%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  AL  S    G TS NP+V C+++ + G V+G G T   G PHAE  AL EAG+ A G
Sbjct: 32  MRRALAASDLVHGTTSPNPAVGCVVLDRAGAVVGTGATTPPGGPHAERVALAEAGDRAAG 91

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV--D 127
            TA VTLEPC+H GR+PPC   ++E GI RV   + DP+   +G GL  L   GI V   
Sbjct: 92  GTAVVTLEPCNHSGRTPPCVDGLLEAGIARVYAALADPNPVAAG-GLDRLRAAGIEVTLG 150

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            +    G+  L  +L RQ   R H+T K+A + D  +  A   S  ITG  ++ +VH LR
Sbjct: 151 TLAGEVGRGPLRGWLHRQHTGRPHVTWKVATTLDGRVAAADGTSRWITGPEARGEVHDLR 210

Query: 188 AQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            + DAI+ G GTVL DDP LT R     L +H P+R+++  H  +   +++   A     
Sbjct: 211 RRMDAIVAGTGTVLDDDPALTARRPDGTLFDHQPLRVVVG-HRDVPPGARLSNRA----- 264

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
                                +++   RD  ++L  LV R    +L+EGG  +A +F+ +
Sbjct: 265 ----------------AGEAEVVHLRTRDPGEVLAELVRRDTVDVLLEGGPTLAGAFVAA 308

Query: 306 RLVDSIILYRSQIVIGEG 323
             VD ++++ +  ++G G
Sbjct: 309 GAVDRVLVHLAPALLGAG 326


>gi|242374059|ref|ZP_04819633.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Staphylococcus epidermidis M23864:W1]
 gi|242348184|gb|EES39786.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Staphylococcus epidermidis M23864:W1]
          Length = 347

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/317 (32%), Positives = 167/317 (52%), Gaps = 9/317 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           +RFM+ A++ ++   G T  NP V  ++VKDG ++G G     G  HAEVQAL+ AG+ A
Sbjct: 2   SRFMNYAIQLAQMVDGQTGINPPVGSVVVKDGRIVGLGAHLKKGDKHAEVQALDMAGQAA 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           + AT YV+LEPC+H+G +PPC   IIE GI++V+  +   D  +  +G + L + GI V+
Sbjct: 62  KDATIYVSLEPCTHHGSTPPCVDKIIEFGIKKVIYAI--KDTTLVSKGDEILKEAGIEVE 119

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
                +       +   + +    +T+K++ S D         S  IT    K  V+ LR
Sbjct: 120 FQFNEDAAELYKDFFPAKRKGIPELTVKVSSSLDGKQATDLDESKWITNKEVKEDVYRLR 179

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DA++ G  T+ ADDP  T R+   +  +P+R+IL     ++ + ++ K    + + I
Sbjct: 180 HEHDAVVTGRKTIEADDPLYTTRVPDGK--NPIRVILSKTGDINFEHQLFKDT-TSQIWI 236

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            TEN+     L    K+I II     +  ++L  L  RG+  LLVE G  +   F+ S  
Sbjct: 237 YTENE----KLKNNDKHIEIINMQECETTEILKDLYRRGIGKLLVEAGPNITSQFLQSDH 292

Query: 308 VDSIILYRSQIVIGEGG 324
           ++ +ILY +  +IG  G
Sbjct: 293 LNELILYLAPKLIGGSG 309


>gi|204927242|ref|ZP_03218444.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204323907|gb|EDZ09102.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 367

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 130/366 (35%), Positives = 188/366 (51%), Gaps = 20/366 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG +
Sbjct: 3   DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHQRAGEPHAEVHALRMAGAK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R   L         QE+   P+RI++D   +++   
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWTELDASTQASYPQENLRQPVRIVIDSQNRVTPAH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           +I++       I  T+ D      A R  ++   +    DL  L+  L  + + S+ VE 
Sbjct: 243 RIVQQPGET-WIARTQEDSRAWPDAVRTISVP-AHNGHLDLVVLMMQLGRQQINSIWVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349
           G  +A + + + LVD +I+Y +  ++G        +P  LE       F      + G D
Sbjct: 301 GPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LERLADAPQFTFSEIRHVGPD 359

Query: 350 VCLEYI 355
           VCL  +
Sbjct: 360 VCLHMV 365


>gi|124514350|gb|EAY55863.1| riboflavin biosynthesis protein RibD [Leptospirillum rubarum]
          Length = 388

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 127/322 (39%), Positives = 175/322 (54%), Gaps = 10/322 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM+ AL  +       + NP V  ++V+ G V+GRG     G PHAEV AL EAGE ARG
Sbjct: 8   FMAMALDLAMMARDDVAPNPRVGAVVVRKGRVVGRGYHERPGLPHAEVLALREAGERARG 67

Query: 70  ATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           AT YV LEPC H   R+PPC + I+  GI RVV+ + DP+  V+G+G+  L + G+ V+ 
Sbjct: 68  ATLYVNLEPCCHLNKRTPPCTREILSSGIGRVVISLSDPNPHVNGKGILELREGGVSVET 127

Query: 129 -MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++  +       +L+     R  +TLK A S D  I  A   S  I+G  S    H LR
Sbjct: 128 GLLAPQAFAVNRGFLSLMKNGRPFVTLKGAASLDGQIATATGDSQWISGAPSLKYAHQLR 187

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
            + DAI+VG+GTVL D+P LT RL GL++ H P+R+ILD   +   DS++ +T   +PV 
Sbjct: 188 QEHDAIVVGVGTVLKDNPLLTTRLPGLRKVHHPVRVILDSLGRTPPDSRLFETISESPVW 247

Query: 247 IVTENDDPVLALA-FRKKNINIIYCDCRDLKK------LLTILVGRGVTSLLVEGGAAVA 299
           I+     P   +A    K             K      LL  L+   + +LLVEGGA V 
Sbjct: 248 IMAGEHAPEDRVARLEDKGARTFRLPAGSDGKGLRLSSLLAALLESRLLTLLVEGGAQVN 307

Query: 300 HSFINSRLVDSIILYRSQIVIG 321
            SF+  RLVDSI L  + ++IG
Sbjct: 308 GSFLQERLVDSIRLVLAPLLIG 329


>gi|37520819|ref|NP_924196.1| riboflavin biosynthesis protein [Gloeobacter violaceus PCC 7421]
 gi|35211814|dbj|BAC89191.1| riboflavin biosynthesis protein [Gloeobacter violaceus PCC 7421]
          Length = 366

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/338 (31%), Positives = 169/338 (50%), Gaps = 13/338 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           V+  D  +M   L  +    G T+ NP V  ++V DG+ +G G     G PHAE  AL  
Sbjct: 2   VAVSDEDWMERCLALAEQAWGRTTPNPLVGAVVVNDGLAVGEGFHPKAGAPHAEAFALRA 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ ARGAT YV LEPC+H+GR+PPC + I+  G++RVV+ + DP+  VSGRGL+ L   
Sbjct: 62  AGDLARGATLYVNLEPCNHHGRTPPCTEAIVAAGLQRVVIGMVDPNPIVSGRGLERLRTA 121

Query: 123 GI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           GI     ++    E   + F H   T     R    LK A++ D         S  I+G 
Sbjct: 122 GIEVSVGVLSDRCERLNEAFSHFMRT----GRPFGVLKYAMTLDGKTATRTGHSFWISGQ 177

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            ++ + H LRA +DA++VG  TV  DDP+LT RL   +  +P+R++L     L  ++++ 
Sbjct: 178 AARARTHRLRAFADAVIVGGNTVRLDDPQLTVRL--AEGRNPLRVVLSRTLALPAEARLW 235

Query: 238 KTALLAPVIIVT-ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
                +P ++ T    DP +     +  + +   D      +L  L      S+L E G 
Sbjct: 236 LDQTPSPTLVFTGAQGDPQMRSHLERLGVEVQVLDELTPAAVLEKLASYPCVSVLWECGG 295

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGY 333
            +A S +    V  +I + +  ++G     +P+  EG+
Sbjct: 296 TLAWSALTDGSVQKVICFVAPCLVGGAQAYTPVAGEGF 333


>gi|269965078|ref|ZP_06179243.1| riboflavin-specific deaminase [Vibrio alginolyticus 40B]
 gi|269830381|gb|EEZ84606.1| riboflavin-specific deaminase [Vibrio alginolyticus 40B]
          Length = 375

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/336 (33%), Positives = 168/336 (50%), Gaps = 28/336 (8%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   MS A++ ++  +  T+ NP+V C+IV+D  ++G G     G PHAEV A+  A
Sbjct: 11  SDLDFAMMSRAIKLAKRGIYTTAPNPNVGCVIVRDEEIVGEGYHHRAGEPHAEVHAMRMA 70

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE+A GATAYVTLEPCSHYGR+PPCA+ +I+  + RVV  + DP+ +V+GRG+Q L   G
Sbjct: 71  GEKAVGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMVDPNPKVAGRGIQMLRDAG 130

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++E +       ++         + LK+A S D    +    S  IT   ++  
Sbjct: 131 IEVQIGLLEQDALALNPGFIKYMRTGMPFVQLKMAASLDGQSALNNGQSQWITSPAARQD 190

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLS 231
           V   RA S  IL    TV+ D+  L  R + L           +   P+R+ILD    L+
Sbjct: 191 VQRYRAMSGGILSTSKTVIDDNASLNVRWDDLPTSVQAQYLREELRQPVRVILDRQNHLT 250

Query: 232 LDSKIIKTALLAPVIIVTENDD--PVLALAFRKKNINIIYCDCRDLKKLLT-ILVGRGVT 288
              K+  T      +I+  + D  P+L  A           D  DL   L  I     + 
Sbjct: 251 GALKLFHTD--GERVIIRSDGDCIPLLDSA-----------DQIDLSTTLKRISDEHHIN 297

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            L VE GA +A + I + LVD +I+Y +  ++G  G
Sbjct: 298 HLWVEAGATLASAMIKANLVDELIVYLAPKLMGSDG 333


>gi|330466988|ref|YP_004404731.1| riboflavin biosynthesis protein ribd [Verrucosispora maris
           AB-18-032]
 gi|328809959|gb|AEB44131.1| riboflavin biosynthesis protein ribd [Verrucosispora maris
           AB-18-032]
          Length = 353

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 115/321 (35%), Positives = 167/321 (52%), Gaps = 26/321 (8%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  A+  +   +G TS NP V C+++  DG V+G G  AY G PHAE+ AL +AG  A+G
Sbjct: 10  MRRAIELAARGLGTTSPNPVVGCVLLDADGEVVGEGFHAYAGGPHAEIVALAQAGHRAKG 69

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-- 127
            TA VTLEPC H GR+ PC+  +++  + RVV+ V DP   V+  G   L   GI VD  
Sbjct: 70  GTAVVTLEPCDHTGRTGPCSDALVQAQVARVVIAVPDP-TPVAAGGAATLRAAGIRVDLG 128

Query: 128 -RMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
            R  E+E G +   A+LT       ++  K A + D     A   S+ IT   ++  VH 
Sbjct: 129 VRATEAENGNV---AWLTAMRRGWPYVIWKYAATLDGRSAAADGTSMWITSEAARMDVHA 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL---NGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           LRA  DA++VG+GTVLADDP LT R      L    P+R+++D   +  LD++I   A  
Sbjct: 186 LRATVDAVIVGVGTVLADDPRLTVRNLRDGSLAIRQPLRVVVDSAGRTPLDAQIRDAAAR 245

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             +    E              +        DL  LL  L  +GV ++L+EGG  +A +F
Sbjct: 246 TWIATAAE--------------VGAGPDGGVDLPALLAALHAKGVRAVLLEGGPKLAGAF 291

Query: 303 INSRLVDSIILYRSQIVIGEG 323
           + + LVD ++ Y +  ++G G
Sbjct: 292 LAAGLVDRVVGYLAPRLLGAG 312


>gi|295135421|ref|YP_003586097.1| bifunctional riboflavin biosynthesis protein RibD [Zunongwangia
           profunda SM-A87]
 gi|294983436|gb|ADF53901.1| bifunctional riboflavin biosynthesis protein RibD [Zunongwangia
           profunda SM-A87]
          Length = 348

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/334 (32%), Positives = 178/334 (53%), Gaps = 18/334 (5%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA- 67
           +++   L+ +   +G T  NP V  +IV    +IG G     G PHAEV A+        
Sbjct: 8   KYIKRCLQLAENGLGSTYPNPMVGSVIVYKNQIIGEGWHQKAGEPHAEVNAVNSVKNRDL 67

Query: 68  -RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            + +T YV+LEPCSH+G++PPC+  II  GI++VVV   DP   V+GRG++ L + G  V
Sbjct: 68  LKKSTIYVSLEPCSHFGKTPPCSDLIIAKGIKKVVVATVDPFAEVAGRGIKKLMEAGCDV 127

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG---MAGCGSVPITGFISKNQ 182
              ++E E +     + T   +KR +I LK A S+D  I          V I+   SK  
Sbjct: 128 TLGVLEQEAQHLNKRFFTFHNKKRPYIILKWAQSEDGFIAPLQRKDRAPVWISNRYSKQL 187

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  RA+  AILVG  T + D+P+L  RL     ++P+R+++D   K+   S I   ++ 
Sbjct: 188 VHKWRAEEQAILVGTKTAIEDNPKLNTRL--YAGNNPVRVVIDRSGKIPAASAIFDGSI- 244

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCD-CRDL-KKLLTILVGRGVTSLLVEGGAAVAH 300
              II+TEN+  + +     KN+   + D  ++L +++ +IL    + S+++EGG     
Sbjct: 245 -KTIIITENNQKITS-----KNLEYRHADFSQNLPEQIGSILFQENLQSVIIEGGLQTLQ 298

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
           SFI+++L D   ++   + + + G+ +P  +G L
Sbjct: 299 SFIDAKLWDEARVFSGNVQL-KMGVSAPEFQGKL 331


>gi|146295833|ref|YP_001179604.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409409|gb|ABP66413.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 371

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/313 (32%), Positives = 163/313 (52%), Gaps = 12/313 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
           + +M  AL  ++    L   NP V  +IVK+G +IG+G     G  HAEV A+E+A   G
Sbjct: 7   SYYMHIALELAKKASPLVLPNPRVGSVIVKNGTIIGKGYHQKYGEKHAEVLAIEDAIKNG 66

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
              + +T YV+LEPC H+G+ PPC   II+ GI++VVV   DP+  V+G+G+Q L Q GI
Sbjct: 67  HSLKNSTMYVSLEPCCHFGKQPPCTDAIIKSGIKKVVVATKDPNPLVNGKGIQILKQHGI 126

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +V+ ++E E +     +         +I +K+A S D  I                  V
Sbjct: 127 KVVEGILEKEAESVNKEFFKYMKTGIPYIAIKVAQSIDGKIAKPSGERFIFNTEDENVFV 186

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA-LL 242
           H LR +  A +V + TV++D+P L  R  G     P+R++LD   ++ L+S I+KT+   
Sbjct: 187 HSLRQKYMATMVSVNTVISDNPILNARY-GQIVRQPIRVVLDSKLRIPLESNIVKTSDEY 245

Query: 243 APVIIVTENDDPVLALAF-RKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296
           +   + +EN +    + F  +K I II+         DL   L+ L  + + S+LVEGG+
Sbjct: 246 STYTVCSENVNDTQKIEFLSQKGIKIIFAKSSEDGHLDLLDALSKLAQQKIVSVLVEGGS 305

Query: 297 AVAHSFINSRLVD 309
            +  S +  R+ D
Sbjct: 306 FLNFSLLKQRIAD 318


>gi|297195567|ref|ZP_06912965.1| riboflavin biosynthesis protein RibD [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197721390|gb|EDY65298.1| riboflavin biosynthesis protein RibD [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 363

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 122/351 (34%), Positives = 183/351 (52%), Gaps = 21/351 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++ +A  M  A+  +   +G TS NP V C+I    G V+G G     G PHAE+ AL  
Sbjct: 3   TAAEADAMRRAITLAARGLGSTSPNPVVGCVITDASGHVVGEGFHQRAGGPHAEIHALRA 62

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  ARG TAYVTLEPC+H GR+ PCAQ ++E G+ RVV  V DP+   +G G   L   
Sbjct: 63  AGVLARGGTAYVTLEPCNHTGRTGPCAQALVEAGVARVVYAVADPNGEAAG-GADTLRAA 121

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V++ ++  E       +LT     R H+T K A + D  +  A   S  I+   S+ 
Sbjct: 122 GIEVEQGLLAEEAAAGNAGWLTSVRLGRPHVTWKYAATLDGRVAAADGTSRWISSPESRA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPH-FKLSLDSKIIKT 239
            VH LRA++DA++VG GT  ADDP L  R + G  +  P+R+++D     +   ++++  
Sbjct: 182 DVHRLRAEADAVVVGSGTARADDPHLAVRGVAGATQ--PLRVVIDTEAVAVKPGARVLDD 239

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVE 293
           A  AP  +    D     L     +I  ++   R      D+  LL  L  RGV S+L+E
Sbjct: 240 A--APTAVAVAED----VLPDATAHIADVWRLPRASGGGLDVAALLATLHTRGVRSVLLE 293

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           GG  +A +F+ +  VD +I Y + +++G G  P+ L +  +      +R D
Sbjct: 294 GGPTLAGAFVAAGAVDRVIGYLAPVLLGAG--PAALADAGITTITDALRLD 342


>gi|197248845|ref|YP_002145398.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197212548|gb|ACH49945.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 367

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 130/366 (35%), Positives = 189/366 (51%), Gaps = 20/366 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG +
Sbjct: 3   DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHQRAGDPHAEVHALRMAGAK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGTSVDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R   L         QE+   P+RI++D   +++   
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           +I++       I  T+ D      A R  ++   +    DL  L+  L  + + S+ VE 
Sbjct: 243 RIVQQPGET-WIARTQEDSRAWPDAVRTISVP-AHNGHLDLVVLMMQLGRQQINSIWVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349
           G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      + G D
Sbjct: 301 GPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRHVGPD 359

Query: 350 VCLEYI 355
           VCL  +
Sbjct: 360 VCLHMV 365


>gi|150003437|ref|YP_001298181.1| riboflavin biosynthesis protein ribD [Bacteroides vulgatus ATCC
           8482]
 gi|254881264|ref|ZP_05253974.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 4_3_47FAA]
 gi|149931861|gb|ABR38559.1| riboflavin biosynthesis protein ribD [Bacteroides vulgatus ATCC
           8482]
 gi|254834057|gb|EET14366.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 4_3_47FAA]
          Length = 350

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/350 (32%), Positives = 184/350 (52%), Gaps = 19/350 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D +++S  L+ +   +  T+ NP V  +IV    +IG G     G  HAEV A+    +E
Sbjct: 4   DEKYISRCLQLAYNGLCNTAPNPMVGAVIVYHDTIIGEGYHIRCGEAHAEVNAIRSVKDE 63

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
              + +T YV+LEPCSHYG++PPCA  IIE  I +VV+   DP  +V+G+G++ L + GI
Sbjct: 64  NLLKESTIYVSLEPCSHYGKTPPCADLIIEKRIPKVVIGCIDPYSQVAGKGIEKLRKAGI 123

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181
            V   ++E E +  +  ++T    KR +ITLK A S D  I +   G  PI  +  ++  
Sbjct: 124 EVTVGVLEEECRHLIRRFITFNTLKRPYITLKWAESADGFIDINRTGGKPIILSNPLTSM 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH  RA+ DAILVG  T L D+P L+ R N   +H P+R+++D    L  D ++    +
Sbjct: 184 LVHKKRAEHDAILVGRHTALLDNPSLSTR-NWYGKH-PVRLVIDKELTLPRDLELFNGKI 241

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTSLLVEGGAAVAH 300
              V        P     +   + N      +D L +++ +L  + + SLLVEGG+ +  
Sbjct: 242 KTFVFTRESPCQPNALTEYISLDFN------KDILPQIMEVLYQKKIQSLLVEGGSILLQ 295

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
           SFI+S L D   + ++ + +   GI +P     ++K    + + YFG ++
Sbjct: 296 SFIDSGLWDEAFIEKAPLRLN-NGIQAP----SIQKKHFKLNKIYFGREI 340


>gi|33603318|ref|NP_890878.1| riboflavin biosynthesis protein ribd [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Bordetella bronchiseptica RB50]
 gi|33577442|emb|CAE34707.1| riboflavin biosynthesis protein ribd [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Bordetella bronchiseptica RB50]
          Length = 374

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/322 (34%), Positives = 169/322 (52%), Gaps = 14/322 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
           M  AL  +R  +  T+ NP V C+IV+DG V+G G T   G PHAEV AL EA   G   
Sbjct: 1   MRRALALARSVMYSTAPNPRVGCVIVRDGQVLGEGATQPPGGPHAEVCALREAAARGASL 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            GAT YVTLEPCSH+GR+PPC   +      RVVV + DP+ RV+G+GL  L   GI V 
Sbjct: 61  AGATVYVTLEPCSHFGRTPPCVDALAAAAPARVVVAMGDPNPRVNGQGLARLRAAGIAVT 120

Query: 128 RMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +  +  + L+A +  R       + LK+A S D    +    S  ITG  ++   H  
Sbjct: 121 EDVCRDEALELNAGFAARMSRGLPWVWLKLAASLDGRSALHNGVSQWITGEAARADGHHW 180

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           RA+S  +L G+GTVL DDP+L  R   +Q  H P + ++D  F++  D+++      A V
Sbjct: 181 RARSGVVLTGMGTVLKDDPQLNAR--AVQTSHPPRKAVIDGRFEIPEDARLFDDG--AQV 236

Query: 246 IIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
           ++ T   D   A     +N  +I       D  DL  ++  L  + +  + VE GA ++ 
Sbjct: 237 LVFTARSDAAKARRMADRNARVIELPGVRPDRVDLPAVMRWLASQEINEVHVEAGAGLSG 296

Query: 301 SFINSRLVDSIILYRSQIVIGE 322
           + +    VD +++Y + +++G+
Sbjct: 297 ALLAEDCVDELLVYLAPVLLGD 318


>gi|301308353|ref|ZP_07214307.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 20_3]
 gi|300833823|gb|EFK64439.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 20_3]
          Length = 359

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 109/326 (33%), Positives = 175/326 (53%), Gaps = 19/326 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + ++M+  +  ++   G  S NP V  ++V  G +IG G     G  HAEV A+    +E
Sbjct: 5   EEKYMARCIELAKGGRGNVSPNPMVGAVVVHKGRIIGEGFHRKCGEAHAEVNAIASVKDE 64

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +  + +T YV+LEPCSHYG++PPCA+ II  GI RVVV   DP   VSGRG++ L + G+
Sbjct: 65  SLLKDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGCLDPFPEVSGRGVRMLREAGV 124

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG-SVPITGFISKNQ 182
            +V  +ME E +    A++T Q + R +I LK A S+D  I       S P+T   S   
Sbjct: 125 EVVTGVMEEEARALNKAFMTLQTKGRPYIILKWAQSEDGFIDRLRTDVSEPVTVLSSPET 184

Query: 183 ---VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
              VH LR++  AI+VG  T L D+P L  R      +SP+R++LD    +    +++  
Sbjct: 185 SRLVHKLRSEVAAIMVGTRTALLDNPSLNVR--HWSGNSPVRVVLDRRLVIPDSYRLLNG 242

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAA 297
              +  +I TE +         ++N+  I  D     ++++L  L  R + SLLVEGGA 
Sbjct: 243 --FSRTLIFTEKE------VENRENMEYIRIDFEGPVIRQVLDHLAARKLDSLLVEGGAQ 294

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323
           + +SF+ + + D + +  + + + +G
Sbjct: 295 LINSFVEADVWDEVRVETAPVRLYQG 320


>gi|242243028|ref|ZP_04797473.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Staphylococcus epidermidis W23144]
 gi|242233486|gb|EES35798.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Staphylococcus epidermidis W23144]
          Length = 343

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 106/314 (33%), Positives = 163/314 (51%), Gaps = 9/314 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A++ ++   G T  NP V  ++VK+G ++G G     G  HAEVQA+E AG +A+GA
Sbjct: 1   MDDAIQLAKMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLKAQGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           T YV+LEPC+H+G +PPC   IIE GI +V+  V   D  +  +G + L + GI V+   
Sbjct: 61  TIYVSLEPCTHHGSTPPCVDKIIEAGISKVIYAV--KDTTLVSKGDEILREAGIEVEFQY 118

Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
                     + T +  +   +T+K++ S D         S  IT    K  V+ LR + 
Sbjct: 119 NENAATLYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLRHEH 178

Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
           DA++ G  T+ AD+P  T R+   +   P+R+IL    +L  + +I K    + + I TE
Sbjct: 179 DAVITGRRTIEADNPLYTTRVPDGKH--PIRVILSKTGQLDFNQQIFKDT-ASEIWIYTE 235

Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
           N+      +F K  INI  CD      +L  L  RG+  LLVE G  +   F+ S+ ++ 
Sbjct: 236 NEKLKTDKSFIKI-INISKCDTT---TILQDLYQRGIGKLLVEAGPNITSQFLQSKHLNE 291

Query: 311 IILYRSQIVIGEGG 324
           +ILY +  +IG  G
Sbjct: 292 LILYIAPKLIGGSG 305


>gi|291279486|ref|YP_003496321.1| bifunctional riboflavin biosynthesis protein RibD [Deferribacter
           desulfuricans SSM1]
 gi|290754188|dbj|BAI80565.1| bifunctional riboflavin biosynthesis protein RibD [Deferribacter
           desulfuricans SSM1]
          Length = 384

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 109/320 (34%), Positives = 171/320 (53%), Gaps = 14/320 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M   ++ +    G T TNP V  +IVKDG +IGRG     G  HAE+ A+ +A E   GA
Sbjct: 8   MKECVQLALLGKGYTKTNPIVGAIIVKDGKIIGRGYHEEYGKSHAEINAMNDAVEPLEGA 67

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
             YVTLEPCS +G++PPC   IIE  I+RV + V DP+ +++G+G+  L + G+ V    
Sbjct: 68  DLYVTLEPCSIHGKTPPCVDAIIENKIKRVFIGVVDPNPKIAGQGIIKLIEAGVEVFVGF 127

Query: 131 ESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           + E    +    T+ V  +  + TLK+A S D  I      S  IT   S+  VH +R+ 
Sbjct: 128 DEELCASIIEDFTKGVLNQEPYYTLKLAQSLDGKIATKTGDSKWITSESSRVYVHYIRSV 187

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA-----LLAP 244
           SDAILVG+ TV  D+P L  RL    E +P +++LDP F++  +S + K       L   
Sbjct: 188 SDAILVGVNTVNRDNPRLDVRLIK-AEVNPYKVVLDPFFEIDTNSFLCKNYSNKLILFVK 246

Query: 245 VIIVTENDDPVLALA---FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I   E  D +++      + ++I  ++    DL  +   L  + + ++L+EGG+  A  
Sbjct: 247 DIKSKEKYDKLISEGVEIVKDESIGELF----DLNFISKYLYSKNILNVLIEGGSETAGR 302

Query: 302 FINSRLVDSIILYRSQIVIG 321
           FI++  VD ++ + +  +IG
Sbjct: 303 FIDAGKVDKVLFFIAPKIIG 322


>gi|160895274|ref|ZP_02076046.1| hypothetical protein CLOL250_02834 [Clostridium sp. L2-50]
 gi|156863153|gb|EDO56584.1| hypothetical protein CLOL250_02834 [Clostridium sp. L2-50]
          Length = 336

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 115/338 (34%), Positives = 166/338 (49%), Gaps = 22/338 (6%)

Query: 34  LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFII 93
           +IVKDG +IG G     G  HAE  A     E+A GA  YVTLEPC HYG+ PPC   II
Sbjct: 1   MIVKDGRIIGEGYHRRYGELHAERDAFAHLTEDAAGAEMYVTLEPCCHYGKQPPCVNAII 60

Query: 94  ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHI 152
           E  I RV V  DDP+  VSG+G Q L   GI ++  +++ E       +    V K  ++
Sbjct: 61  EHKISRVYVGSDDPNALVSGKGYQILRDAGIEVITHVLKEECDSLNPVFFHYIVNKTPYV 120

Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN 212
            +K A++ D  I      S  ITG  ++  V   R     I+VG  TV+ DDP LTCR  
Sbjct: 121 VMKYAMTMDGKIATYSGKSKWITGEEARAHVMEQRNALTGIMVGSETVIKDDPALTCRRA 180

Query: 213 GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT--ENDDPVLALAFRKKNINIIYC 270
           G +  +P+RII D   ++ +DS+I++TA   P I+ T    D            + II  
Sbjct: 181 GGR--NPVRIICDSRLRIPMDSQIVRTASEVPTILATIQSEDQTDKKQKLIGAGVEIIET 238

Query: 271 DC----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG--- 323
           +      DL++L+  L  R +  +L+EGG  +  S + + +V  + +Y +  + G     
Sbjct: 239 ENVDGHVDLQELMRQLGARNIDGILLEGGGTLNESALKAGIVKEVDVYIAPKIFGGSAGY 298

Query: 324 ------GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
                 G+ SP EE Y    F       FG+D+ L+Y 
Sbjct: 299 TPVGGMGVESP-EEAY---PFELGSVQRFGADIMLQYF 332


>gi|296117961|ref|ZP_06836544.1| riboflavin biosynthesis protein RibD [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969192|gb|EFG82434.1| riboflavin biosynthesis protein RibD [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 355

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 115/309 (37%), Positives = 158/309 (51%), Gaps = 31/309 (10%)

Query: 20  WHV-GLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLE 77
           W V G TS NP V  ++V   G ++G G T   G  HAEVQAL EA     GATA VTLE
Sbjct: 27  WEVRGTTSPNPPVGAVMVSTAGEIVGTGATQPAGGAHAEVQALAEAVGRTDGATAVVTLE 86

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG-KI 136
           PC H GR+ PC Q +IE GI+ V     DP+    G G + L + G+ V ++   EG   
Sbjct: 87  PCRHTGRTGPCTQALIEAGIQEVYYLHSDPNPEAGG-GAEALREAGVNVTQLSAPEGMPD 145

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
            L  +L      R H+TLK A + D     A   S  ITG +++  VH  RA  DAI++G
Sbjct: 146 ALIPWLKSVQLGRPHVTLKFAQTIDGFTAAADGTSQWITGEMARQYVHEDRAHRDAIIIG 205

Query: 197 IGTVLADDPELTCRL-NGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
            GT L D+P LT R  +G Q EH P R+++    +L+                V EN   
Sbjct: 206 TGTALTDNPSLTARFPDGSQREHQPRRVVIG-RRRLA---------------DVGENASN 249

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
           +  L F +      Y     + + L  L   G   +LVEGGA +A  F+N+ LVD + +Y
Sbjct: 250 LNRLGFEQ------YAK---IDEALQELYASGARDVLVEGGAGLASGFMNAGLVDWVQVY 300

Query: 315 RSQIVIGEG 323
           ++ +++GEG
Sbjct: 301 QAPLLLGEG 309


>gi|16763796|ref|NP_459411.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|161615396|ref|YP_001589361.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167992266|ref|ZP_02573364.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168240239|ref|ZP_02665171.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194442362|ref|YP_002039658.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194449088|ref|YP_002044451.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197264648|ref|ZP_03164722.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|224582254|ref|YP_002636052.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|16418920|gb|AAL19370.1| pyrimidine deaminase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|161364760|gb|ABX68528.1| hypothetical protein SPAB_03167 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401025|gb|ACF61247.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194407392|gb|ACF67611.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197242903|gb|EDY25523.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205329484|gb|EDZ16248.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205339872|gb|EDZ26636.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|224466781|gb|ACN44611.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261245699|emb|CBG23495.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267992127|gb|ACY87012.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301157027|emb|CBW16510.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312911449|dbj|BAJ35423.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321225143|gb|EFX50204.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323128735|gb|ADX16165.1| Riboflavin biosynthesis protein ribD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332987364|gb|AEF06347.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 367

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 130/366 (35%), Positives = 189/366 (51%), Gaps = 20/366 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG +
Sbjct: 3   DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGAK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R   L         QE+   P+RI++D   +++   
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           +I++       I  T+ D      A R  ++   +    DL  L+  L  + + S+ VE 
Sbjct: 243 RIVQQPGET-WIARTQEDSRAWPDAVRTISVP-AHNGHLDLVVLMMQLGRQQINSIWVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349
           G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      + G D
Sbjct: 301 GPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRHVGPD 359

Query: 350 VCLEYI 355
           VCL  +
Sbjct: 360 VCLHMV 365


>gi|148555358|ref|YP_001262940.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Sphingomonas wittichii RW1]
 gi|148500548|gb|ABQ68802.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Sphingomonas wittichii RW1]
          Length = 313

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/204 (47%), Positives = 127/204 (62%), Gaps = 3/204 (1%)

Query: 23  GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
           G T+ NP+V C+IV+DG VIGRG T  GG PHAE  A+E AG+ A GAT YVTLEPC+H 
Sbjct: 13  GRTAPNPNVGCVIVRDGRVIGRGWTGAGGRPHAEAIAIEAAGDLA-GATLYVTLEPCAHV 71

Query: 83  -GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG-KIFLHA 140
             R P CA  I+     RVV+ + DPD R  GRG+  ++  GI V   +E+E  +  +  
Sbjct: 72  SARGPACADLIVAAKPARVVIALRDPDPRTDGRGIARITAAGIAVATGVEAEAARASMAG 131

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +LTR+ + R H+TLK+A S D  I +    S  ITG  ++   HL RA+ + ILVG GT+
Sbjct: 132 FLTRRSKGRPHVTLKLATSLDGRIALPDRSSRWITGPAARAHAHLERARHEMILVGRGTL 191

Query: 201 LADDPELTCRLNGLQEHSPMRIIL 224
            AD P L  RL GL+E SP R +L
Sbjct: 192 EADSPGLDVRLPGLEERSPRRAVL 215


>gi|67924763|ref|ZP_00518165.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67853388|gb|EAM48745.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 348

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 101/313 (32%), Positives = 167/313 (53%), Gaps = 5/313 (1%)

Query: 26  STNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRS 85
           + NP V  ++VK+G +IG G     G PHAEV AL +AGE A G T YV LEPC+HYGR+
Sbjct: 8   NPNPMVGAVVVKNGQIIGEGFHPKPGDPHAEVFALRDAGENAAGGTVYVNLEPCNHYGRT 67

Query: 86  PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTR 144
           PPC + +I   + +VVV + DP+  VSG+GL  L   GI ++  + E+  +    A+  R
Sbjct: 68  PPCTEALIAARVAKVVVGMVDPNPLVSGKGLAKLEDAGIEVIVGVEETACRRLNEAFCHR 127

Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
            +  +    LK A++ D  I  +   S  +TG  S+  VH  RA  DA++VG  TV  D+
Sbjct: 128 ILHHQCFGILKYAMTLDGKIATSTGHSAWVTGTTSRQLVHQTRAGCDAVIVGGNTVRRDN 187

Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE-NDDPVLALAFRKK 263
           P LT  ++     +P+R+++  +  L  ++ +     +AP ++ TE   +P L    R K
Sbjct: 188 PHLT--IHQATGRNPLRVVMSRNLHLPQEANLWDVQ-VAPTLVFTEWGKNPSLQAELRSK 244

Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            + ++        +++ +L  R ++S+L E G  +    I   ++  ++ + +  +IG  
Sbjct: 245 GVEVLELSPLSPAQVMEVLYERQLSSILWECGGVLGAQAIREGVIQKVMAFMAPKIIGGV 304

Query: 324 GIPSPLEEGYLEK 336
              SP+ +  LEK
Sbjct: 305 SAASPVGDLGLEK 317


>gi|256827880|ref|YP_003156608.1| riboflavin biosynthesis protein RibD [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577056|gb|ACU88192.1| riboflavin biosynthesis protein RibD [Desulfomicrobium baculatum
           DSM 4028]
          Length = 374

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 113/335 (33%), Positives = 167/335 (49%), Gaps = 24/335 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D  FM  A+R +    G T+ NP V  ++ + G V+  G     G PHAEV+AL +A   
Sbjct: 4   DCAFMDQAIRLAEQGRGRTAPNPCVGAVLTRGGEVVAEGWHTACGQPHAEVEALRDAQAK 63

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G + RG T YVTLEPC+H G++PPC + I+E G+  VVV   DP+  V+G G  +L  +G
Sbjct: 64  GVDPRGCTLYVTLEPCNHQGKTPPCTRAILEAGVPEVVVGCADPNPTVAGGGADFLRGRG 123

Query: 124 IIVDRM--MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           + V RM   E E +  +  +L  Q   R +  LK+A + D  I      +  I+G  S+ 
Sbjct: 124 VTV-RMGVREQECRDLIADFLVWQTTARPYSILKLATTLDGKIATRDGQAAWISGEASRR 182

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIIL-----DPHFKLSLDSKI 236
           +VH LR    A++VG GT  AD+P LTCRL G     P+ +I+     DP    + DS +
Sbjct: 183 EVHRLRTWCQAVIVGGGTFRADNPSLTCRLPGYDGPQPLAVIVSRSLPDP----AQDSNL 238

Query: 237 IKTALLAPVIIVTE-NDDPVLALAFRKKNINIIYCDC-------RDLKKLLTIL-VGRGV 287
           + T     +   TE     + A    +  + +    C        DL   L +L   RG 
Sbjct: 239 LSTRPDQIIFWTTEAQSRSIRATRLTELGVTVWGLPCLKTPAETLDLNAGLQLLRKDRGC 298

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
              L EGG  +A S     LVD + ++++  V+G+
Sbjct: 299 HYTLTEGGGHLAGSMQRQGLVDELRIFQAMKVLGD 333


>gi|198244553|ref|YP_002214370.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205351727|ref|YP_002225528.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207855897|ref|YP_002242548.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|197939069|gb|ACH76402.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205271508|emb|CAR36326.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|206707700|emb|CAR31984.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|326622118|gb|EGE28463.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326626762|gb|EGE33105.1| Riboflavin biosynthesis protein ribD [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 367

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 129/370 (34%), Positives = 190/370 (51%), Gaps = 28/370 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG +
Sbjct: 3   DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHQRAGEPHAEVHALRMAGAK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R   L         QE+   P+RI++D   +++   
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++      +    E+     D V  ++    N ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWIARTQEDSRAWPDSVRTISVPAHNGHL------DLVVLMMQLGRQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRH 355

Query: 346 FGSDVCLEYI 355
            G DVCL  +
Sbjct: 356 VGPDVCLHMV 365


>gi|322614696|gb|EFY11625.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618802|gb|EFY15690.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322623509|gb|EFY20348.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322629193|gb|EFY25972.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322631913|gb|EFY28667.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322637350|gb|EFY34052.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322642035|gb|EFY38645.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322647854|gb|EFY44329.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322652532|gb|EFY48886.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322653306|gb|EFY49639.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322660545|gb|EFY56781.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322664697|gb|EFY60890.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322669250|gb|EFY65400.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322670795|gb|EFY66928.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322678966|gb|EFY75021.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322681994|gb|EFY78019.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322685177|gb|EFY81174.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323194475|gb|EFZ79670.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323196988|gb|EFZ82130.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323203973|gb|EFZ88990.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323206942|gb|EFZ91895.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323210840|gb|EFZ95712.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323214531|gb|EFZ99282.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323223088|gb|EGA07431.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323227037|gb|EGA11218.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323230145|gb|EGA14265.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323233883|gb|EGA17972.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323238423|gb|EGA22481.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323244111|gb|EGA28120.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323246271|gb|EGA30254.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323251897|gb|EGA35760.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323257894|gb|EGA41573.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323261093|gb|EGA44685.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323264977|gb|EGA48476.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323272540|gb|EGA55947.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 367

 Score =  163 bits (413), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 129/370 (34%), Positives = 190/370 (51%), Gaps = 28/370 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG +
Sbjct: 3   DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHQRAGEPHAEVHALRMAGAK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQSGIAV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R   L         QE+   P+RI++D   +++   
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++      +    E+     D V  ++    N ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWIARTQEDSRAWPDSVRTISVPAHNGHL------DLVVLMMQLGRQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRH 355

Query: 346 FGSDVCLEYI 355
            G DVCL  +
Sbjct: 356 VGPDVCLHMV 365


>gi|238911451|ref|ZP_04655288.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
          Length = 367

 Score =  163 bits (413), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 129/370 (34%), Positives = 190/370 (51%), Gaps = 28/370 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG +
Sbjct: 3   DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGAK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R   L         QE+   P+RI++D   +++   
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPTH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++      +    E+     D V  ++    N ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWIARTQEDSRAWPDSVRTISVPAHNGHL------DLVVLMMQLGRQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRH 355

Query: 346 FGSDVCLEYI 355
            G DVCL  +
Sbjct: 356 VGPDVCLHMV 365


>gi|94265528|ref|ZP_01289276.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific
           deaminase-like [delta proteobacterium MLMS-1]
 gi|93453969|gb|EAT04315.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific
           deaminase-like [delta proteobacterium MLMS-1]
          Length = 374

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 133/372 (35%), Positives = 189/372 (50%), Gaps = 22/372 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ D  +M  AL  +R  VG T+ NP V  ++VK+G V+G+G     G PHAE +AL  
Sbjct: 1   MTAADLTYMRLALAEARKGVGKTAPNPCVGAVVVKNGRVVGKGWHRKIGQPHAEAEALRA 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A GAT YVTLEPC+H+GR+PPC++ II  GIRRVV  + DP     G G + L   
Sbjct: 61  AGEAAAGATIYVTLEPCNHHGRTPPCSEAIIAAGIRRVVYGLADPHEVARG-GAKRLESA 119

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ ++  ++  E +     ++ R    R  + LK AVS D  I  A   S  ITG  ++ 
Sbjct: 120 GLEVLGGVLADECRRLNLPFIKRVTCGRPWVLLKAAVSLDGRIAAATGHSQWITGPPARR 179

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKII-KT 239
             H LR QSDAILVG GTVLADDP LT RL  G +   P+R++LD   +    ++++ + 
Sbjct: 180 LAHRLRQQSDAILVGSGTVLADDPSLTTRLPGGRRGRDPLRVVLDSRLQTPPTARMLSQQ 239

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--------------DLKKLLTILVGR 285
           +  A  I          A A       ++  +                DL ++L  L   
Sbjct: 240 SPAATWIFCAPEAATERAAALEAAGARVVRLEPTPGGQSGLEPNFSGLDLWQVLRELAAN 299

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCV 341
           GV  LLVEGG  V  SF+   L D  +   + ++IG  G+P  +PL    ++K      V
Sbjct: 300 GVNQLLVEGGGRVHGSFLRQNLADEAVFCIAPLLIGADGLPVVAPLNCKRVDKAPRLREV 359

Query: 342 RRDYFGSDVCLE 353
                G D+ L 
Sbjct: 360 SSRRLGDDIMLR 371


>gi|301165384|emb|CBW24955.1| riboflavin biosynthesis protein [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           and 5-amino-6-(5-phosphoribosylamino)uracil reductase]
           [Bacteriovorax marinus SJ]
          Length = 378

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 110/329 (33%), Positives = 164/329 (49%), Gaps = 12/329 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D +++      ++   G+TS NP V  +IV+D I+IG G     G PHAE  A+  A E 
Sbjct: 6   DEQYIRRCFALAKKATGMTSPNPLVGSVIVQDNIIIGEGYHQRYGEPHAEPNAINNAVEP 65

Query: 67  ARGATAYVTLEPCSHYGR-SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
             GAT Y  LEPC H  + +PPC   IIE  I+RVV+   DP+  V+G G++ L + GI 
Sbjct: 66  VEGATLYCNLEPCCHTNKQTPPCVNKIIESKIKRVVISNLDPNPYVAGNGVKKLREAGIA 125

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   ++E EG+     +      ++  + +K+A + D  I      S  I+  +++ +VH
Sbjct: 126 VSVGVLEEEGRELNEVFFKYITTQKPFVHIKLAQTLDGKIATDSGDSKWISSELARERVH 185

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALLA 243
             R + DA+L+G  T+  DDP L  R+    E   P RIIL    KLS + K+   +  A
Sbjct: 186 QWRKKYDAVLIGRNTLENDDPTLNIRMGVDAEGKHPFRIILCSVDKLSTEFKVFNDSASA 245

Query: 244 PVIIVTEND-----DPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEG 294
             II+T  +            F  K + II      D  DL  LL  L    ++S+LVEG
Sbjct: 246 KTIILTSANSLDKCSEEKIEFFENKGVRIITVEKKEDSFDLNDLLLKLGALKISSILVEG 305

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           G +V  +FI+    D + L+    +IG G
Sbjct: 306 GQSVITAFIDQVEYDKLSLFICPKIIGNG 334


>gi|168237529|ref|ZP_02662587.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194734520|ref|YP_002113449.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194710022|gb|ACF89243.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197289553|gb|EDY28916.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 367

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 129/370 (34%), Positives = 190/370 (51%), Gaps = 28/370 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG +
Sbjct: 3   DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGAK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQSGIAV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R   L         QE+   P+RI++D   +++   
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++      +    E+     D V  ++    N ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWIARTQEDSRAWPDSVRTISVPAHNGHL------DLVVLMMQLGRQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRH 355

Query: 346 FGSDVCLEYI 355
            G DVCL  +
Sbjct: 356 VGPDVCLHMV 365


>gi|319892826|ref|YP_004149701.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5- phosphoribosylamino)uracil reductase
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317162522|gb|ADV06065.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5- phosphoribosylamino)uracil reductase
           [Staphylococcus pseudintermedius HKU10-03]
 gi|323464142|gb|ADX76295.1| riboflavin specific deaminase [Staphylococcus pseudintermedius
           ED99]
          Length = 348

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 108/318 (33%), Positives = 163/318 (51%), Gaps = 10/318 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG-EEA 67
            ++  A++ +    G T TNP+V  +IVK G +IG G     G  HAE+QA++ AG +  
Sbjct: 3   HYLDYAIQLAEMTQGQTGTNPAVGAVIVKHGRIIGFGAHLKKGERHAEIQAIDMAGAKHV 62

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           +GAT YV+LEPCSHYG +PPCAQ II+ GI +VV    D  ++ +   +  + Q GI V+
Sbjct: 63  KGATIYVSLEPCSHYGSTPPCAQRIIDTGIAKVVYAAKDTTLQETSHDV--MVQHGIEVE 120

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
                  +    A+   +      +T+K++ S D         S  IT    K  V  LR
Sbjct: 121 YRPHPRAEQLYAAFYRSKEGAVPIVTVKVSASIDGKQATDHFESQWITSKQVKADVFQLR 180

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
              DAI+ G GT+  D+P LT R+     H P ++IL    K++ D+++ +   + P+ I
Sbjct: 181 HSHDAIITGNGTLTHDNPSLTTRVE--DGHHPAKVILSRSGKINWDAQLFQDH-VTPIYI 237

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            TEN     AL     ++ II      ++ +L  L  +G   +LVE G  V   F+ SRL
Sbjct: 238 YTENQ----ALTSSFDHVEIIQQTDIQIEDVLKDLYQKGYGHVLVEAGPNVTSQFLASRL 293

Query: 308 VDSIILYRSQIVIGEGGI 325
           V   ILY +  +IG  G+
Sbjct: 294 VTHFILYLAPKIIGGQGV 311


>gi|168261151|ref|ZP_02683124.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205350075|gb|EDZ36706.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 367

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 129/370 (34%), Positives = 190/370 (51%), Gaps = 28/370 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG +
Sbjct: 3   DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGAK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R   L         QE+   P+RI++D   +++   
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++      +    E+     D V  ++    N ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWIARTQEDSRAWPDSVRTISVPAHNGHL------DLVVLMMQLGRQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRH 355

Query: 346 FGSDVCLEYI 355
            G DVCL  +
Sbjct: 356 VGPDVCLHMV 365


>gi|16759393|ref|NP_455010.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29142835|ref|NP_806177.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213427850|ref|ZP_03360600.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|213650168|ref|ZP_03380221.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
 gi|213855380|ref|ZP_03383620.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
 gi|289825059|ref|ZP_06544411.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|25331497|pir||AH0553 riboflavin biosynthesis protein RibD [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16501684|emb|CAD08872.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138467|gb|AAO70037.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 367

 Score =  163 bits (412), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 129/370 (34%), Positives = 190/370 (51%), Gaps = 28/370 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG +
Sbjct: 3   DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGAK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R   L         QE+   P+RI++D   +++   
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++      +    E+     D V  ++    N ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWIARTQEDSHAWPDSVRTISVPAHNGHL------DLVVLMMQLGRQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRH 355

Query: 346 FGSDVCLEYI 355
            G DVCL  +
Sbjct: 356 VGPDVCLHMV 365


>gi|271964337|ref|YP_003338533.1| diaminohydroxyphosphoribosylaminopyrimidinedeami nase
           [Streptosporangium roseum DSM 43021]
 gi|270507512|gb|ACZ85790.1| Diaminohydroxyphosphoribosylaminopyrimidinedeami nase
           [Streptosporangium roseum DSM 43021]
          Length = 388

 Score =  163 bits (412), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 119/342 (34%), Positives = 167/342 (48%), Gaps = 41/342 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D   M  A+  +    G TS NP V C+++   G V+G G  AY G PHAEV AL  AGE
Sbjct: 3   DQAHMRRAIELAARGRGTTSPNPVVGCVVLDAAGQVVGEGFHAYAGGPHAEVVALRAAGE 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            ARG TAYVTLEPC H GR+ PCA  ++E GI RVVV V DP+   +G G   L++ G+ 
Sbjct: 63  RARGGTAYVTLEPCDHTGRTGPCALALLEAGIARVVVAVRDPNPAAAG-GADRLTRHGVA 121

Query: 126 VDR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
           V    + E  G+     +LT     R H+T K A + D     A   S  IT   S+  V
Sbjct: 122 VTTGVLAEEAGRGNAE-WLTSVRLGRPHVTWKYAATLDGRSAAADGTSQWITSPESRADV 180

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHS-------------- 218
           H LR ++DAI+ GIGTVLADD  LT R            +GL + +              
Sbjct: 181 HRLRGEADAIIAGIGTVLADDARLTVRRPAADGAPAGVDSGLPDGAATARPLAQGAPATR 240

Query: 219 -PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR---- 273
            P+R+++D   +  L ++++     AP ++   +               ++    R    
Sbjct: 241 PPLRVVVDSDARTPLTARVLDG--RAPTLVAVAD---DADADALAAGAEVVRLARRRPYG 295

Query: 274 -DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
            DL  LL  L  R +  +L+EGG  +A SF+   L+D ++ Y
Sbjct: 296 LDLAGLLAELHRRQIVGVLLEGGPTLAGSFLKEGLIDRVVGY 337


>gi|167551773|ref|ZP_02345526.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205323400|gb|EDZ11239.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 367

 Score =  163 bits (412), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 129/366 (35%), Positives = 189/366 (51%), Gaps = 20/366 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG +
Sbjct: 3   DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGAK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R   L         QE+   P+RI++D   +++   
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWTELDASTQASYPQENLRQPVRIVIDSQNRVTPAH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           +I++       I  T+ D      + R  ++   +    DL  L+  L  + + S+ VE 
Sbjct: 243 RIVQQPGET-WIARTQGDSRAWPDSVRTISVP-AHNGHLDLVVLMMQLGRQQINSIWVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349
           G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      + G D
Sbjct: 301 GPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRHVGPD 359

Query: 350 VCLEYI 355
           VCL  +
Sbjct: 360 VCLHMV 365


>gi|325299195|ref|YP_004259112.1| riboflavin biosynthesis protein RibD [Bacteroides salanitronis DSM
           18170]
 gi|324318748|gb|ADY36639.1| riboflavin biosynthesis protein RibD [Bacteroides salanitronis DSM
           18170]
          Length = 356

 Score =  163 bits (412), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 115/338 (34%), Positives = 173/338 (51%), Gaps = 21/338 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D +++S  ++ ++  +  T  NP V  +IV    +IG G     G  HAEV A+    +E
Sbjct: 4   DEKYISRCIQLAKNGLCNTPPNPMVGAVIVYQDRIIGEGYHIRCGEGHAEVNAIASVKDE 63

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +  R +T YV+LEPCSHYG++PPCA  II  GI RVVV   DP   VSGRG+Q L   G+
Sbjct: 64  SLLRQSTLYVSLEPCSHYGKTPPCADLIIRKGIPRVVVGCTDPFPLVSGRGIQKLRDAGV 123

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181
            V   ++E E K  +  ++T  +++R +ITLK A S D  I +      P+  +  ++  
Sbjct: 124 EVKVGVLEQECKDLIRRFVTFNLKQRPYITLKWAQSADGFIDVLRQEGTPVKLSSPLTSM 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH LRA+  AILVG  T L D+P LT R       +P+R+++D    L    ++   + 
Sbjct: 184 YVHKLRAEHQAILVGRKTALLDNPSLTVR--EWYGKNPLRLVIDRDLSLPASLRLFDGS- 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVA 299
             P  + T  +         + N+  +  D     L ++   L    V SLLVEGG+ + 
Sbjct: 241 -TPTWVFTSKE------KASRPNLTYVRLDFGQDILPQIAQALCENKVQSLLVEGGSTLL 293

Query: 300 HSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGY 333
            SFI+  + D I    +  V+G+G     IPS +  GY
Sbjct: 294 QSFIDRGMWDEIYAEHTSAVLGKGVPAPAIPSGIPVGY 331


>gi|56414429|ref|YP_151504.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|168818973|ref|ZP_02830973.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|197363349|ref|YP_002142986.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|200389971|ref|ZP_03216582.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|56128686|gb|AAV78192.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094826|emb|CAR60359.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|199602416|gb|EDZ00962.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205344221|gb|EDZ30985.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320084692|emb|CBY94483.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 367

 Score =  163 bits (412), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 129/370 (34%), Positives = 190/370 (51%), Gaps = 28/370 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG +
Sbjct: 3   DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGAK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R   L         QE+   P+RI++D   +++   
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++      +    E+     D V  ++    N ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWIARTQEDSRAWPDSVRTISVPAHNGHL------DLVVLMMQLGRQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRH 355

Query: 346 FGSDVCLEYI 355
            G DVCL  +
Sbjct: 356 VGPDVCLHMV 365


>gi|124010107|ref|ZP_01694767.1| riboflavin biosynthesis protein RibD [Microscilla marina ATCC
           23134]
 gi|123983875|gb|EAY24280.1| riboflavin biosynthesis protein RibD [Microscilla marina ATCC
           23134]
          Length = 355

 Score =  163 bits (412), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 167/332 (50%), Gaps = 14/332 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D +FM  AL  +    G  S NP V C+IV    +IG G   + G  HAEV A+     +
Sbjct: 14  DEKFMQRALDLAVLGAGKVSPNPMVGCVIVHQEQIIGEGWHQFYGKAHAEVNAVNAVENK 73

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           A    AT YVTLEPC+H G++PPCA  +I+  ++RVVVC  DP   V G+GL+ L   GI
Sbjct: 74  ALLSEATVYVTLEPCAHQGKTPPCADLLIKHQVKRVVVCNQDPHPLVGGKGLEKLRTAGI 133

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V   ++E++GK     + T  +++R ++  K A + D  I      S  I+  +S+  V
Sbjct: 134 EVTVGILEAQGKEVNKRFFTGLLKQRPYVIFKWAETADGFIARKNYESKWISNKMSRMLV 193

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  R + D+I+VG  T   D+P+L  RL   +  +P R+++D   KL  +  +     L 
Sbjct: 194 HKWRTEEDSIMVGSNTARYDNPQLNARL--WKGRNPARVVIDRRLKLPSNLHLYNQQQLT 251

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCD-CRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            +               +  N+  +  D  + L+++L  L  + + S++VEGG+ + +  
Sbjct: 252 FIYNQLSRS--------QASNLEFVKLDEDKFLEEVLLDLYEKKIRSVIVEGGSTLINLL 303

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
           I   + D   +++S   +   GI +P   G+L
Sbjct: 304 IEQNMWDEARVFKSTQTVFHEGIKAPKVHGHL 335


>gi|318042152|ref|ZP_07974108.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Synechococcus sp. CB0101]
          Length = 359

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 119/356 (33%), Positives = 188/356 (52%), Gaps = 19/356 (5%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +M  AL+ +    G TS NP V C+++ + G ++G G     G PHAEV AL +AGE AR
Sbjct: 8   WMQRALQLAALGNGRTSPNPLVGCVVLDRAGQLVGEGFHQRAGTPHAEVHALRQAGERAR 67

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           G TA VTLEPC H+GR+PPC++ ++  G+ RVVV + DPD RV+G+GL  L   G+ +++
Sbjct: 68  GGTAVVTLEPCCHHGRTPPCSEALLAAGVARVVVAMRDPDPRVAGKGLAQLRDAGVDVLE 127

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + E+E +I    +L R  + R    LK A+S D    +    S  I+G  ++  VH LR
Sbjct: 128 GVCEAEARILNRGFLHRVEQGRPLGLLKWAMSLDGRTALPNGSSQWISGPPARAWVHHLR 187

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           AQ DA++VG GTV AD+P LT R  G +   P+R+++     L   +++   +  A +++
Sbjct: 188 AQCDAVIVGGGTVRADNPLLTSR--GQRTPEPLRVVISRSLDLPKQAQLWNQSEAATLVV 245

Query: 248 VT-----ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            +     E  D +  L   +    ++   C  L +LL  L  RG   +L E G  +A + 
Sbjct: 246 HSSSAPAEQLDRLDGLGVER----LVLERCEPL-ELLEALGQRGCNQVLWECGPELAAAA 300

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEE-GYLEKN----FMCVRRDYFGSDVCLE 353
           +    V  +    +  ++G     +PL + G ++ N    +   R    G+D  LE
Sbjct: 301 LRQGCVQQVAAVLAPKLLGGTAARTPLGDLGLVDVNQAVAWSRSRLQQLGNDCLLE 356


>gi|312794193|ref|YP_004027116.1| riboflavin biosynthesis protein ribd [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181333|gb|ADQ41503.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 371

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 103/313 (32%), Positives = 164/313 (52%), Gaps = 12/313 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
           + +M+ AL  ++    L   NP V C+IVK+G +IG+G     G  HAEV A+E+A   G
Sbjct: 7   SYYMNMALELAKKASPLVLPNPRVGCVIVKNGTIIGKGYHQKYGEKHAEVLAIEDAIKNG 66

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
              + AT YV+LEPC H+G+ PPC + II+ GI++VVV   DP+  V+G G+Q L Q GI
Sbjct: 67  YLLKNATMYVSLEPCCHFGKQPPCTEAIIKSGIKKVVVATRDPNPLVNGNGIQILKQHGI 126

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +V+ +++ E +     +     +   +  +K+A S D  I          +       V
Sbjct: 127 EVVEGVLQKEAESINKDFFKYMKKGIPYTAIKVAQSIDGKIATPSNKRFLFSTEEENLFV 186

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA-LL 242
           H LR +  A LV + TV++D+P L  R  G     P+R++LD   ++ L+  I+KT+   
Sbjct: 187 HSLRQKYMATLVSVNTVISDNPILNARY-GEIVRQPIRVVLDTKLRIPLECNIVKTSDEY 245

Query: 243 APVIIVTEN-DDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296
           +  I+ +EN +D        +K I II+         DL    + L  + + S+LVEGG+
Sbjct: 246 STYIVCSENVNDTQKIDLLSQKGIKIIFAKSSEDGHLDLSDAFSKLAQQKIVSVLVEGGS 305

Query: 297 AVAHSFINSRLVD 309
            +  S +  R+ D
Sbjct: 306 LLNFSLLKQRIAD 318


>gi|168232389|ref|ZP_02657447.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194470692|ref|ZP_03076676.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194457056|gb|EDX45895.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205333401|gb|EDZ20165.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 367

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 129/370 (34%), Positives = 190/370 (51%), Gaps = 28/370 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG +
Sbjct: 3   DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGAK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R   L         QE+   P+RI++D   +++   
Sbjct: 183 LRAQSHAILTSGATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPTH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++      +    E+     D V  ++    N ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWIARTQEDSRAWPDSVRTISVPAHNGHL------DLVVLMMQLGRQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRH 355

Query: 346 FGSDVCLEYI 355
            G DVCL  +
Sbjct: 356 VGPDVCLHMV 365


>gi|270284895|ref|ZP_06194289.1| riboflavin-specific deaminase [Chlamydia muridarum Nigg]
 gi|270288923|ref|ZP_06195225.1| riboflavin-specific deaminase [Chlamydia muridarum Weiss]
 gi|13633863|sp|Q9PLJ6|RIBD_CHLMU RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
           RecName:
           Full=Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase; Includes: RecName:
           Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
          Length = 371

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 105/322 (32%), Positives = 159/322 (49%), Gaps = 5/322 (1%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  A+            NP V C+IVK+G +IGRG     G PHAEV A ++      G
Sbjct: 11  FMREAVALGERGRIFAPPNPWVGCVIVKNGCIIGRGWHKGIGSPHAEVCAFQDQTSSLVG 70

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           A  YVTLEPC H+GR+PPC   +I+  +  V + + DPD RV  RG+  L + GI V   
Sbjct: 71  ADVYVTLEPCCHFGRTPPCVDLLIKSKVSSVYIALLDPDPRVCKRGVARLKEAGISVYVG 130

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +   E K  L  YL ++      + +K A S D         S  I+G  ++  V  LRA
Sbjct: 131 IGHEEAKASLQPYLHQRETGLPWVVMKTAASLDGQTSDRRGISQWISGEQARLDVGRLRA 190

Query: 189 QSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           +S A++VG  TV  D+P L+ R+    L E  P+R+++D    + LD+++        ++
Sbjct: 191 ESQAVIVGSRTVCLDNPRLSARMPSGDLYERQPLRVVVDSRGSVPLDARVWNPDSGNVLL 250

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
             TE            + + +     +  DLK+LL  L  +G   +LVEGGA +  +F  
Sbjct: 251 ATTEQCSKEHIQKLEDRGVEVWKSSPQQVDLKRLLQYLAEKGCLQVLVEGGARLHSAFWR 310

Query: 305 SRLVDSIILYRSQIVIGEGGIP 326
             LV++ ++Y     +G+ G P
Sbjct: 311 EHLVNAGVIYWGPKFLGDQGSP 332


>gi|332299428|ref|YP_004441349.1| riboflavin biosynthesis protein RibD [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332176491|gb|AEE12181.1| riboflavin biosynthesis protein RibD [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 343

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 119/349 (34%), Positives = 175/349 (50%), Gaps = 31/349 (8%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D  +M   L+ +    G TS NP V  +IV    +IG G   Y G PHAEV A   
Sbjct: 8   TSPSDQIYMQRCLQLAALAQGRTSPNPMVGSVIVYKDKIIGEGYHHYAGAPHAEVMAWRS 67

Query: 63  AGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
             EE R     AT YV+LEPC+HYG++PPCA+ + +    RVV+ + DP  +V GRG+  
Sbjct: 68  VPEELRSVIGKATWYVSLEPCAHYGKTPPCAELLAKLRPARVVIAMLDPFAKVDGRGVAR 127

Query: 119 LSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM----AGCGSVP 173
           L + GI V    +E E       +L  Q   R ++TLK A S D+ I      A      
Sbjct: 128 LREAGIEVSIGCLEQEAIALNRHFLVAQTLGRPYVTLKWAESADHYIDRLRHDASEAPYT 187

Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIIL------DP 226
            +  + +  VH LR+  DAILVG  T   DDP LT R  +G Q   P+R++        P
Sbjct: 188 FSSPLRQRSVHRLRSLHDAILVGHHTAELDDPLLTNRSGSGGQ---PIRLLWCHSRLPRP 244

Query: 227 HFKLSLDSKIIKTALLAPVII--VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
             ++  D+      LL P ++  VT+   P         +++ +     +++ LLT+L  
Sbjct: 245 ELRMLQDASAPTILLLPPALLEQVTDGQYP--------PHVSCL-ATTGEVRDLLTLLHS 295

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           +G+ SLLVEGGA V   F+++ L D I +  + + + E G+P+P  E +
Sbjct: 296 QGIESLLVEGGAQVQQRFLDAGLYDEINVEHAPVELHE-GVPAPHLERW 343


>gi|329943233|ref|ZP_08292007.1| riboflavin biosynthesis protein RibD [Chlamydophila psittaci Cal10]
 gi|332287812|ref|YP_004422713.1| riboflavin biosynthesis protein [Chlamydophila psittaci 6BC]
 gi|313848384|emb|CBY17388.1| riboflavin biosynthesis protein RibD [Chlamydophila psittaci RD1]
 gi|325507267|gb|ADZ18905.1| riboflavin biosynthesis protein [Chlamydophila psittaci 6BC]
 gi|328814780|gb|EGF84770.1| riboflavin biosynthesis protein RibD [Chlamydophila psittaci Cal10]
 gi|328915072|gb|AEB55905.1| riboflavin biosynthesis protein RibD [Chlamydophila psittaci 6BC]
          Length = 368

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 106/328 (32%), Positives = 167/328 (50%), Gaps = 16/328 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  A+         +  NP V C+IVK+G +IG G     G PHAE +A+  A E   G
Sbjct: 11  FMRRAIELGEKGAFSSQPNPWVGCVIVKNGRIIGEGYHEKAGQPHAEEKAIRSASESIEG 70

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DR 128
           +  YVTLEPC HYG +PPC   +I+  +  V V + DPD RVSGRG+  L + GI V + 
Sbjct: 71  SEVYVTLEPCCHYGNTPPCVNLLIKYKVAAVYVALLDPDSRVSGRGIASLRKAGICVYEG 130

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + + E +  L +YL ++   +  + +K A + D  +      S  IT   ++  V  LRA
Sbjct: 131 LGKEEAERSLKSYLYQRTHGKPWVVIKSAATLDGQVADKDGQSQWITCPEARADVGKLRA 190

Query: 189 QSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
            S AI+VG  TVL D+P LT R     L    P+R+++D    +  ++ I  +   +  +
Sbjct: 191 CSQAIIVGSKTVLKDNPLLTARKPSGELYPCQPLRVVVDSKGVIPPEANIFHSTGKSLYV 250

Query: 247 IVTENDDPVLALAFRKK----NINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAV 298
              ++         RKK     ++++  + +D    L +L+T L       +LVEGGA +
Sbjct: 251 TTAQSSK-----DHRKKIEDLGVDLLVTESKDSKVNLHELMTYLSTTHTLQVLVEGGAVL 305

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP 326
             SF+  RL ++++LY    ++G+   P
Sbjct: 306 HTSFLKERLANTLVLYLGPKILGDQRKP 333


>gi|213163224|ref|ZP_03348934.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 367

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 129/370 (34%), Positives = 190/370 (51%), Gaps = 28/370 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG +
Sbjct: 3   DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGAK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R   L         QE+   P+RI++D   +++   
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAY 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++      +    E+     D V  ++    N ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWIARTQEDSHAWPDSVRTISVPAHNGHL------DLVVLMMQLGRQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRH 355

Query: 346 FGSDVCLEYI 355
            G DVCL  +
Sbjct: 356 VGPDVCLHMV 365


>gi|256839100|ref|ZP_05544610.1| riboflavin biosynthesis protein RibD [Parabacteroides sp. D13]
 gi|256740019|gb|EEU53343.1| riboflavin biosynthesis protein RibD [Parabacteroides sp. D13]
          Length = 359

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 108/312 (34%), Positives = 168/312 (53%), Gaps = 19/312 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + ++M+  +  ++   G  S NP V  ++V  G +IG G     G  HAEV A+    +E
Sbjct: 5   EEKYMARCIELAKGGRGNVSPNPMVGAVVVHKGRIIGEGFHRKCGEAHAEVNAIASVKDE 64

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +  + +T YV+LEPCSHYG++PPCA+ II  GI RVVV   DP   VSGRG++ L + G+
Sbjct: 65  SLLKDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGCLDPFPEVSGRGVRMLREAGV 124

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG-SVPITGFISKNQ 182
            +V  +ME E +    A++T Q + R +I LK A S+D  I       S P+T   S   
Sbjct: 125 EVVTGVMEEEARALNKAFMTLQTKGRPYIILKWAQSEDGFIDRLRTDVSEPVTVLSSPET 184

Query: 183 ---VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
              VH LR++  AI+VG  T L D+P L  R      +SP+R++LD    +    +++  
Sbjct: 185 SRLVHKLRSEVAAIMVGTRTALLDNPSLNVR--HWSGNSPVRVVLDRRLVIPDSYRLLNG 242

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAA 297
              +  +I TE +         ++N+  I  D     ++++L  L  R + SLLVEGGA 
Sbjct: 243 --FSRTLIFTEKE------VENRENMEYIRIDFEGPVIRQVLDHLAARKLDSLLVEGGAQ 294

Query: 298 VAHSFINSRLVD 309
           + +SF+ + + D
Sbjct: 295 LINSFVEADVWD 306


>gi|293366290|ref|ZP_06612971.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319592|gb|EFE59957.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 343

 Score =  162 bits (410), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 105/314 (33%), Positives = 161/314 (51%), Gaps = 9/314 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A++ ++   G T  NP V  ++VK+G ++G G     G  HAEVQA+E AG   +GA
Sbjct: 1   MDDAIQLAKMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLNTQGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           T YV+LEPC+H+G +PPC   IIE GI +V+  V   D  +  +G + L + GI V+   
Sbjct: 61  TIYVSLEPCTHHGSTPPCVHKIIEAGISKVIYAV--KDTTLVSKGDEILREAGIEVEFQY 118

Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
                     + T +  +   +T+K++ S D         S  IT    K  V+ LR + 
Sbjct: 119 NENAAALYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLRHEH 178

Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
           DA++ G  T+ AD+P  T R+   +   P+R+IL    +L  + +I K    + + I TE
Sbjct: 179 DAVITGRRTIEADNPLYTTRVPDGKH--PIRVILSKKGQLDFNQQIFKDT-ASEIWIYTE 235

Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
           N+      +F K  INI  CD      +L  L  RG+  LLVE G  +   F+ S+ ++ 
Sbjct: 236 NEKLKTNKSFIKI-INISNCDTT---TILQDLYQRGIGKLLVEAGPNITSQFLQSKHLNE 291

Query: 311 IILYRSQIVIGEGG 324
           +ILY +  +IG  G
Sbjct: 292 LILYIAPKLIGGSG 305


>gi|120403674|ref|YP_953503.1| riboflavin biosynthesis protein RibD [Mycobacterium vanbaalenii
           PYR-1]
 gi|119956492|gb|ABM13497.1| riboflavin biosynthesis protein RibD [Mycobacterium vanbaalenii
           PYR-1]
          Length = 333

 Score =  162 bits (410), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 112/316 (35%), Positives = 163/316 (51%), Gaps = 33/316 (10%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M+AA+  S    G T  NP V  +I+ +DG + G G TA  G PHAEV AL  AGE A G
Sbjct: 7   MAAAIEQSERVKGRTYPNPPVGAVILDRDGEIAGVGATAPPGGPHAEVVALRRAGERAVG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            TA VTLEPC+H+GR+PPC   +++ GI  V   V DPD   +G G   L++ G+ V   
Sbjct: 67  GTAVVTLEPCNHFGRTPPCVDALLDAGIAEVAFAVADPDPVAAG-GAARLAESGVRVSAG 125

Query: 130 MESEGKIF--LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
           + +       L  +L +Q     H+T K A S D     A   S  IT   ++  VH  R
Sbjct: 126 VLAADVTGGPLREWLHKQRTGMPHVTWKFATSVDGRSAAADGSSQWITSEAARADVHRRR 185

Query: 188 AQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           A +DAI+VG GTV  DDP LT RL    L +H P+R+++    ++S D+ ++        
Sbjct: 186 ATADAIIVGTGTVFVDDPALTARLPDGSLADHQPLRVVVGKR-EISPDATVL-------- 236

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
                NDD    +  R  N +          +++  L  R  T + VEGG  +A +F+ +
Sbjct: 237 -----NDD-SRTMVIRTHNPH----------EVIKALADR--TDVFVEGGPTLAGAFLRA 278

Query: 306 RLVDSIILYRSQIVIG 321
            ++D I+ Y + I++G
Sbjct: 279 GVIDRILAYVAPILLG 294


>gi|15834728|ref|NP_296487.1| riboflavin-specific deaminase [Chlamydia muridarum Nigg]
 gi|7190138|gb|AAF38983.1| riboflavin-specific deaminase [Chlamydia muridarum Nigg]
          Length = 396

 Score =  162 bits (410), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 105/322 (32%), Positives = 159/322 (49%), Gaps = 5/322 (1%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  A+            NP V C+IVK+G +IGRG     G PHAEV A ++      G
Sbjct: 36  FMREAVALGERGRIFAPPNPWVGCVIVKNGCIIGRGWHKGIGSPHAEVCAFQDQTSSLVG 95

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           A  YVTLEPC H+GR+PPC   +I+  +  V + + DPD RV  RG+  L + GI V   
Sbjct: 96  ADVYVTLEPCCHFGRTPPCVDLLIKSKVSSVYIALLDPDPRVCKRGVARLKEAGISVYVG 155

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +   E K  L  YL ++      + +K A S D         S  I+G  ++  V  LRA
Sbjct: 156 IGHEEAKASLQPYLHQRETGLPWVVMKTAASLDGQTSDRRGISQWISGEQARLDVGRLRA 215

Query: 189 QSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           +S A++VG  TV  D+P L+ R+    L E  P+R+++D    + LD+++        ++
Sbjct: 216 ESQAVIVGSRTVCLDNPRLSARMPSGDLYERQPLRVVVDSRGSVPLDARVWNPDSGNVLL 275

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
             TE            + + +     +  DLK+LL  L  +G   +LVEGGA +  +F  
Sbjct: 276 ATTEQCSKEHIQKLEDRGVEVWKSSPQQVDLKRLLQYLAEKGCLQVLVEGGARLHSAFWR 335

Query: 305 SRLVDSIILYRSQIVIGEGGIP 326
             LV++ ++Y     +G+ G P
Sbjct: 336 EHLVNAGVIYWGPKFLGDQGSP 357


>gi|111024118|ref|YP_707090.1| riboflavin biosynthesis protein RibD [Rhodococcus jostii RHA1]
 gi|110823648|gb|ABG98932.1| riboflavin biosynthesis protein RibD [Rhodococcus jostii RHA1]
          Length = 350

 Score =  162 bits (410), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 106/306 (34%), Positives = 162/306 (52%), Gaps = 33/306 (10%)

Query: 23  GLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G TS NP+V  +++   G + G G+T   G PHAEV AL EAG+ ARG TA VTLEPC+H
Sbjct: 26  GFTSPNPAVGAVVLDAAGRIAGVGMTQPPGGPHAEVVALREAGDAARGGTAVVTLEPCNH 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG--KIFLH 139
           +GR+ PC+Q +++ G+  V   V DP+   +G G + L   G+ V   + ++   +  L 
Sbjct: 86  HGRTGPCSQALLDAGVVAVHYAVGDPNPEAAG-GAETLISAGVEVTSGLRAQDVERGPLR 144

Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199
           A+L RQ   R H+T K A + D     A   S  ITG  ++ +VH  RA+ DAI+VG GT
Sbjct: 145 AWLHRQRTGRPHVTWKYAATLDGRSAAADGTSQWITGPEARERVHADRAKLDAIVVGTGT 204

Query: 200 VLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
           VLADDP LT R+    L  H P+R+++     +  D++++              DD    
Sbjct: 205 VLADDPRLTARMPDGSLAAHQPVRVVVG-LGDIPADARVL--------------DDSAPT 249

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
           L  R  +++ +     +             T +L+EGG  +A +F+ +  VD I  Y + 
Sbjct: 250 LLLRTHDVDEVLAALAEY------------TDVLLEGGPRLAGAFLAAGRVDRIQAYLAP 297

Query: 318 IVIGEG 323
           +++G G
Sbjct: 298 LILGAG 303


>gi|312869208|ref|ZP_07729380.1| riboflavin biosynthesis protein RibD [Lactobacillus oris
           PB013-T2-3]
 gi|311095229|gb|EFQ53501.1| riboflavin biosynthesis protein RibD [Lactobacillus oris
           PB013-T2-3]
          Length = 352

 Score =  162 bits (410), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 172/347 (49%), Gaps = 29/347 (8%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGEEARGATAYVTLEPCSHYG 83
           T  NP V  ++VK+G V+  G T   G PHAE  AL + A  +A GAT YVTLEPC+HYG
Sbjct: 21  TWRNPGVGAVVVKNGHVLATGHTQPYGGPHAERDALSQLAPGQAAGATLYVTLEPCNHYG 80

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYL 142
           + PPC Q II+ GI+RVV+   DP   V+G+G+  L   GI +V  +   +       Y 
Sbjct: 81  KQPPCTQLIIDSGIQRVVIAQLDPHALVTGKGVAALRHHGIEVVTGIGTQQAAQVNPHYN 140

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
                 R  +TLK AVS D  I         IT      +VH  RA    I++G  T + 
Sbjct: 141 FFYRHHRPWVTLKQAVSLDGRISAGPGQRTAITNQAVYQRVHQERAGFQGIVIGSTTAIV 200

Query: 203 DDPEL--TCRLNGLQEHSPMRIILDPHFKLS--LDSKIIKTALLAPVIIVTENDDPVLAL 258
           DDP L  T +L     H P+R++LD   +L+   D ++ +   LAP  + TE     L  
Sbjct: 201 DDPTLVPTPQLT----HLPIRVVLDRRGRLADYPDRQLFRDG-LAPTWVFTERKS--LPD 253

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
               +    +  DC  +  ++ +L   GV SL VEGG  + ++F  + LV+ ++ Y S +
Sbjct: 254 RLGPRAWVFVLPDC-SVPAVVQVLAEEGVQSLYVEGGPTIQNAFARAGLVEEVLTYLSPV 312

Query: 319 VIGEGGIP--SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQE 363
           ++G+ G+P  +P E    +             D  LE +G N+ + E
Sbjct: 313 MLGQEGVPGFAPPETWKFQ-------------DQQLELLGNNVRIAE 346


>gi|261749554|ref|YP_003257240.1| riboflavin biosynthesis protein RibD [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497647|gb|ACX84097.1| riboflavin biosynthesis protein RibD [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 347

 Score =  162 bits (410), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 109/344 (31%), Positives = 172/344 (50%), Gaps = 20/344 (5%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67
           FM  A++ ++  +GLTS NP V CLI ++G+++  G     G  HAEV A+      +  
Sbjct: 7   FMYRAIQLAKNGLGLTSPNPMVGCLIERNGLILSEGWHYKVGMDHAEVNAINRVENTSLL 66

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
             +T YVTLEPC H+G++PPC   II+  I RVV+ + DP  +V+G G+Q L + GI ++
Sbjct: 67  TDSTLYVTLEPCVHFGKTPPCVDLIIKSKIPRVVIGIQDPCHKVNGLGIQKLRENGIEVI 126

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP----ITGFISKNQ 182
           + ++  + +I    + T   +KR +I LK A S D  +             I+G  S+  
Sbjct: 127 ENVLRDQCRILNKRFFTFYEKKRPYIILKWAQSDDGFMDSLKRNEKKKPSWISGIYSRQL 186

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H  R++ D+ILVG  TV  D+P+L  R        P+RI +D   KLS+ +        
Sbjct: 187 SHKWRSEEDSILVGRKTVFNDNPKLDVR--EWFGSDPIRIFMDR--KLSISASYFILDGT 242

Query: 243 APVIIVTENDDPVLALAFRKKNINI--IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
              I+ TE           +KN     I  D   +K +   L  + + SL+VEGG     
Sbjct: 243 KKTIVFTEKKKE------NQKNTEFVQISFDKEIIKNIFNYLYQKNILSLIVEGGRMTLE 296

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           SFI + + D   ++   I + + G+ +P+ +G + KN     RD
Sbjct: 297 SFIKANIWDESRIFICNIFLKD-GLKAPVIDGRVIKNMYIGERD 339


>gi|226366358|ref|YP_002784141.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Rhodococcus opacus B4]
 gi|226244848|dbj|BAH55196.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Rhodococcus opacus B4]
          Length = 354

 Score =  162 bits (410), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 110/306 (35%), Positives = 161/306 (52%), Gaps = 33/306 (10%)

Query: 23  GLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G TS NP+V  +++   G + G G+T   G PHAEV AL EAG+ ARG TA VTLEPC+H
Sbjct: 30  GFTSPNPAVGAVVLDAAGRIAGVGMTQPPGGPHAEVVALREAGDAARGGTAVVTLEPCNH 89

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG--KIFLH 139
           +GR+ PC+Q +++ G+  V   V DP+   +G G + L   G+ V   + ++   +  L 
Sbjct: 90  HGRTGPCSQALLDAGVVAVHYAVGDPNPEAAG-GAEALVSAGVEVTSGLRADDVERGPLR 148

Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199
           A+L RQ   R H+T K A + D     A   S  ITG  ++ +VH  RA+ DAI+VG GT
Sbjct: 149 AWLHRQRTGRPHVTWKYAATLDGRSAAADGTSQWITGPEARERVHADRAKLDAIVVGTGT 208

Query: 200 VLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
           VLADDP LT R     L  H P+R+             ++    + P   V ++  P L 
Sbjct: 209 VLADDPRLTARTPDGSLAAHQPVRV-------------VVGLGDIPPGARVLDDSAPTLR 255

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
           L              RD+ ++L  L     T +L+EGG  +A +F+ +  VD I  Y + 
Sbjct: 256 L------------RTRDVDEVLAAL--SEYTDVLLEGGPRLAGAFLAAGRVDRIQAYLAP 301

Query: 318 IVIGEG 323
           +++G G
Sbjct: 302 LILGAG 307


>gi|168465506|ref|ZP_02699388.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195631795|gb|EDX50315.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 367

 Score =  162 bits (409), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 130/366 (35%), Positives = 189/366 (51%), Gaps = 20/366 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG +
Sbjct: 3   DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGAK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEVEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R   L         QE+   P+RI++D   +++   
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           +I++       I  T+ D      A R  ++   +    DL  L+  L  + + S+ VE 
Sbjct: 243 RIVQQPGET-WIARTQEDSRAWPDAVRTISVP-AHNGHLDLVVLMMQLGRQQINSIWVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349
           G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      + G D
Sbjct: 301 GPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRHVGPD 359

Query: 350 VCLEYI 355
           VCL  +
Sbjct: 360 VCLHMV 365


>gi|327538743|gb|EGF25393.1| riboflavin biosynthesis protein RibD [Rhodopirellula baltica WH47]
          Length = 394

 Score =  162 bits (409), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 128/384 (33%), Positives = 194/384 (50%), Gaps = 37/384 (9%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D R+M+ A+  +    G    NP V C++V+D + IG+G     G PHAEV+AL   
Sbjct: 13  SAVDVRWMTEAIELAYQGRGKVEPNPPVGCVLVRDSVCIGKGYHQRFGGPHAEVEALSSC 72

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            ++A GATAYV+LEPC H+G++PPCA  +I   + RVVV V DP  +V G G++ L   G
Sbjct: 73  -DDATGATAYVSLEPCCHHGKTPPCADALIRAKVARVVVSVVDPFDQVDGGGIEKLRAAG 131

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +V  + +  G+  L AYL R       +  K A+S D  I      S  ITG  S+  
Sbjct: 132 IEVVTGIAKEAGEELLAAYLKRVRTGMPWVIAKWAMSLDGRIATQTGESKWITGPASRGA 191

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP-------------MRIILDPHFK 229
           VH LRA  DAI VG+GTV+AD+P LT RL+ L + S              +R++      
Sbjct: 192 VHELRASVDAIAVGMGTVIADNPLLTVRLSELAKVSAAKSTNTEDRSNQLVRLVYSRSRL 251

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALA----FRKKNINIIYCDCRDLKKLLT---IL 282
             L S++++TA   P  ++     P +A A        ++    C+  D  +++    + 
Sbjct: 252 PDLQSQLVQTASQTPTWLIA---GPQIANADLARLADHDVETWQCESADPIEMVQQSLLW 308

Query: 283 VG-----RG--VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
           +G     RG  +T L+VEGG+ +  SF  +  +D +  + +   IG    P PL +  ++
Sbjct: 309 LGSKDNPRGLEMTHLMVEGGSQLLGSFAAADQIDEVHAFIAGSCIGGRSAPGPLGDPGIK 368

Query: 336 -----KNFMCVRRDYFGSDVCLEY 354
                 +    R D F +DV L Y
Sbjct: 369 ALSDATSLRMSRVDSFDNDVRLIY 392


>gi|300087628|ref|YP_003758150.1| riboflavin biosynthesis protein RibD [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527361|gb|ADJ25829.1| riboflavin biosynthesis protein RibD [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 362

 Score =  162 bits (409), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 111/329 (33%), Positives = 171/329 (51%), Gaps = 22/329 (6%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL+ +   +G  S NP+V  ++VKD  ++G+G T   G  HAEV AL +AG  ++GA
Sbjct: 1   MQQALKLAGLALGEVSPNPAVGAVVVKDDEIVGQGYTQPPGQEHAEVMALNQAGARSQGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
             YVTLEPC+H GR+PPC   II  GI+ V     D +  V G+G   L+  GI V    
Sbjct: 61  VMYVTLEPCAHQGRTPPCTDAIIAAGIKEVHFATLDDNPVVFGKGKAALTAAGIEVHVGE 120

Query: 131 ESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
             +    L+ AY          +T K A+S D  I      S  I+   S+   H LR +
Sbjct: 121 HRDAARELNEAYFKYINTGLPFVTAKFAMSLDGKIATRTGDSKWISNDESRAFAHSLRHE 180

Query: 190 SDAILVGIGTVLADDPELTCRL----NGLQEHSPMRIILDPHFKLSLDSKII-----KTA 240
           +DAI+ G+GTV+AD+P+LT R      G     P+RI++D H + + D+ ++     +T 
Sbjct: 181 ADAIMAGVGTVIADNPKLTARCCAGSGGTSHKQPLRIVVDSHGR-TPDTAVLFHEPGRTI 239

Query: 241 LLAPVIIVTENDDPVLAL-----AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
           L     +  E   P         +F   N  +      DL  L++ L  + +TS++VEGG
Sbjct: 240 LAFGGQVSEERRIPYTQAGAELESFPDGNGRV------DLPALMSFLGKQQITSVIVEGG 293

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           +++  S  ++ LVD +I++ + ++IG GG
Sbjct: 294 SSLLGSMFDAGLVDKVIVFIAPMIIGGGG 322


>gi|62179027|ref|YP_215444.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62126660|gb|AAX64363.1| pyrimidine deaminase/reductase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322713488|gb|EFZ05059.1| Riboflavin biosynthesis protein ribD [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 367

 Score =  162 bits (409), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 129/366 (35%), Positives = 189/366 (51%), Gaps = 20/366 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG +
Sbjct: 3   DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGAK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+G++PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGQTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R   L         QE+   P+RI++D   +++   
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           +I++       I  T+ D      A R  ++   +    DL  L+  L  + + S+ VE 
Sbjct: 243 RIVQQPGET-WIARTQEDSRAWPDAVRTISVP-AHNGHLDLVVLMMQLGRQQINSIWVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349
           G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      + G D
Sbjct: 301 GPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRHVGPD 359

Query: 350 VCLEYI 355
           VCL  +
Sbjct: 360 VCLHMV 365


>gi|331697233|ref|YP_004333472.1| riboflavin biosynthesis protein RibD [Pseudonocardia dioxanivorans
           CB1190]
 gi|326951922|gb|AEA25619.1| riboflavin biosynthesis protein RibD [Pseudonocardia dioxanivorans
           CB1190]
          Length = 385

 Score =  162 bits (409), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 108/309 (34%), Positives = 151/309 (48%), Gaps = 39/309 (12%)

Query: 23  GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G TS NP V C+++ +DG V G G TA  G PHAEV AL EAGE ARG TA VTLEPC+H
Sbjct: 37  GTTSPNPPVGCVVLDRDGRVAGTGATAPPGGPHAEVAALAEAGERARGGTAVVTLEPCAH 96

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG--IIVDRMMESEGKIFLH 139
           +GR+PPC   +   GI  V   V DP+   +G G   L   G  + V  +        L 
Sbjct: 97  HGRTPPCTDALRAAGIVAVHAGVADPNPVAAG-GAAVLRAAGVDVTVGTLGAEVAAGPLR 155

Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199
            +L      R H+T K A + D     A   S  ITG  ++ +VH LRA SDA++VG GT
Sbjct: 156 GWLHATRTGRPHVTWKFAATLDGRSAAADGSSRWITGPAARARVHALRATSDAVVVGTGT 215

Query: 200 VLADDPELTCR--LNGLQEHSPMRIILD---PHFKLSLDSKIIKTALLAPVIIVTENDDP 254
            LADDP LT R          P+R+++    P     LD+                    
Sbjct: 216 ALADDPALTARDAAGTPVPRQPLRVLVGLRHPRPGSHLDAP------------------- 256

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
                      ++++    D  ++L  L  RGV  +L+EGG  +A +F+ +  VD ++ +
Sbjct: 257 -----------DVLHLRTHDPDEVLAALHARGVVDVLLEGGPRLAGAFLAAGRVDRVLAH 305

Query: 315 RSQIVIGEG 323
            +  ++G G
Sbjct: 306 LAPALLGAG 314


>gi|306833066|ref|ZP_07466197.1| riboflavin biosynthesis protein RibD [Streptococcus bovis ATCC
           700338]
 gi|304424775|gb|EFM27910.1| riboflavin biosynthesis protein RibD [Streptococcus bovis ATCC
           700338]
          Length = 351

 Score =  162 bits (409), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 122/357 (34%), Positives = 181/357 (50%), Gaps = 21/357 (5%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAGEEA 67
           +M+ A+  ++       TNP V  +IVK+G VI RG     G  HAE  A+   E  EE 
Sbjct: 5   YMAQAIAAAKQGFRQIYTNPLVGAVIVKNGRVIARGAHLQYGHEHAEKNAILHCEVPEEL 64

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
             +T YVTLEPC H G+ PPC Q I+E GI++VVV   DP+  V+G+GL++L  +GI +V
Sbjct: 65  ANSTLYVTLEPCHHTGKQPPCTQAIVEAGIKKVVVGQLDPNPLVAGKGLEFLKSQGIEVV 124

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
            +++E+E +     Y      KR ++ LK AVS D  I + G  +  +T   +   VH  
Sbjct: 125 TQVLENEARALNPHYNFYHEYKRPYVVLKQAVSLDGKIAVLGKRTA-LTNDETNRFVHDE 183

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALLAP 244
           R    AILVG  TVL D+P+L     G   + P+R+ILD   ++    + +I K    AP
Sbjct: 184 RDDYQAILVGADTVLIDNPQLLGA--GTSLYPPVRVILDETGRIFDKRELQIFKNQ-SAP 240

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           V I +        +A    +I +I      +  +L  L  + + S+ VEGGA V  +F+ 
Sbjct: 241 VYIFSRRQ-----VANLPAHITVIALSNFSIANILQALYEKKIQSVYVEGGAQVHDAFLA 295

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           S L D +I Y +  VIG  G  +      +E+ +          D  ++ IG NL L
Sbjct: 296 SDLWDELISYVTPKVIGGNGRAAMASSRQVEQVYDL-------QDFSVQTIGTNLRL 345


>gi|184155252|ref|YP_001843592.1| riboflavin biosynthesis protein [Lactobacillus fermentum IFO 3956]
 gi|183226596|dbj|BAG27112.1| riboflavin biosynthesis protein [Lactobacillus fermentum IFO 3956]
          Length = 352

 Score =  162 bits (409), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 114/330 (34%), Positives = 160/330 (48%), Gaps = 19/330 (5%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-A 63
           S D +FM  AL  +      T  NP V  +IVKDG ++  G     G  HAE  A+ + +
Sbjct: 2   SSDEQFMQLALAEAAKGGSATWKNPQVGAVIVKDGQLLATGYHHQYGQAHAERDAISKLS 61

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            E+  GAT YVTLEPC HYG+ PPC+Q +I+    RVVV   DP   V G+G+  L   G
Sbjct: 62  NEQLAGATIYVTLEPCFHYGKQPPCSQLLIDSHFARVVVATIDPHQVVGGKGIAQLKAAG 121

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V+  +++ + +     Y     ++R  IT K A+S D  +  A   +  IT   ++  
Sbjct: 122 IDVEVGLLKDQAEALNRHYFYFYRQQRPWITAKQALSLDGKVAAAPGQATAITNQAARRL 181

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTAL 241
           VH  RA   AI+VG GTVLADDP L C    L    P+R+ILD   + L    + + T  
Sbjct: 182 VHQERADYHAIVVGAGTVLADDPRLLCETPQL--FPPVRVILDRAGRLLDYQDRFVFTDA 239

Query: 242 LAPVIIVTEN------DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
            AP  +VT N      D P         ++ +      D  +LL       + SL VEGG
Sbjct: 240 SAPTWLVTTNRAATKVDWPA--------HVTVKLLQNGDWPELLDYFKEAELQSLYVEGG 291

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
            AV      +  V+ +I Y    +IG+ G+
Sbjct: 292 PAVLTELFQAVPVNQLITYLDPQIIGDQGL 321


>gi|152964097|ref|YP_001359881.1| riboflavin biosynthesis protein RibD [Kineococcus radiotolerans
           SRS30216]
 gi|151358614|gb|ABS01617.1| riboflavin biosynthesis protein RibD [Kineococcus radiotolerans
           SRS30216]
          Length = 338

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/319 (34%), Positives = 154/319 (48%), Gaps = 25/319 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D   M+ A+  +   +G TS NP V C+++   G V G G     G PHAEV AL  AG+
Sbjct: 3   DREVMARAVALAARGLGTTSPNPVVGCVVLDAAGEVAGEGWHERAGGPHAEVNALAAAGD 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            ARG TAYVTLEPC+H GR+ PC Q ++  GI RVV  V DP   ++G G + L   G+ 
Sbjct: 63  RARGGTAYVTLEPCNHTGRTGPCVQALLRAGIARVVFAVADPGA-LAGGGARELRAAGVE 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V  ++  E +    A+LT     R H+  K A + D     A   S  I+   S+ QVH
Sbjct: 122 VVAGVLAEEAERVNEAWLTSARRHRPHVLWKFAATLDGRSAAADGTSRWISSAASRGQVH 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR + DA++ G GTVLADDP LT R              +P   LS    +        
Sbjct: 182 DLRRRVDAVVAGSGTVLADDPRLTAR--------------EPDGTLSARQPLRVVVDRRG 227

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
            +  T         A    +   +         LL  L  RGV S+L+EGG  +A +F+ 
Sbjct: 228 RVPATA--------AVLDGSAPTLVSTAATPADLLAELHERGVVSVLLEGGPTLAGAFLA 279

Query: 305 SRLVDSIILYRSQIVIGEG 323
           + LVD +  Y +  ++G G
Sbjct: 280 AGLVDRVTAYVAPTLLGAG 298


>gi|160888034|ref|ZP_02069037.1| hypothetical protein BACUNI_00442 [Bacteroides uniformis ATCC 8492]
 gi|317478584|ref|ZP_07937741.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 4_1_36]
 gi|156862533|gb|EDO55964.1| hypothetical protein BACUNI_00442 [Bacteroides uniformis ATCC 8492]
 gi|316905225|gb|EFV27022.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 4_1_36]
          Length = 351

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 120/360 (33%), Positives = 184/360 (51%), Gaps = 27/360 (7%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++S + ++M   ++ ++  +  T+ NP V  +IV DG +IG G     G  HAEV A+  
Sbjct: 1   MNSEEEKYMLRCIQLAQNGLCNTAPNPMVGAVIVCDGKIIGEGYHVRCGEAHAEVNAIRS 60

Query: 63  AGEEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             + +  + +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP  +V+GRG+Q L 
Sbjct: 61  VKDTSLLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCRDPFSKVAGRGIQKLK 120

Query: 121 QKG--IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TG 176
             G  +IV  ++E+E +  +  ++T    +R +ITLK A S D  I  +     P+  + 
Sbjct: 121 DAGREVIVG-VLETECRQLIRRFITFHTLRRPYITLKWAESSDRYIDYSRTDGKPVILSS 179

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
            ++   VH  RA+  AILVG  T   D+P L  R       SP+RI+LD   KLS    +
Sbjct: 180 PLTSMLVHKKRAEHSAILVGTRTAELDNPCLNVR--HWYGRSPVRIVLDRQQKLSPSLHL 237

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLL 291
              ++  P ++ TE     L         N+ Y    D     L +L+  L  RG+ SLL
Sbjct: 238 FDGSV--PTLVFTEAPHAPLP--------NVEYLPVSDYRRNILPELMETLYTRGLQSLL 287

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY---LEKNFMCVRRDYFGS 348
           VEGG+    SFI++ L D I +  +  ++  G     + +GY    E +F    R Y  S
Sbjct: 288 VEGGSQTLQSFIDAGLWDEIFVEEAPHLLHSGVKAPEISDGYPFATEYSFGRSFRHYTAS 347


>gi|86142849|ref|ZP_01061288.1| riboflavin biosynthesis protein RibD [Leeuwenhoekiella blandensis
           MED217]
 gi|85830881|gb|EAQ49339.1| riboflavin biosynthesis protein RibD [Leeuwenhoekiella blandensis
           MED217]
          Length = 343

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 109/326 (33%), Positives = 170/326 (52%), Gaps = 17/326 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--R 68
           MS  L+ ++  +G T  NP V  +IV +  +IG G     G PHAEV A+    +++   
Sbjct: 1   MSRCLQLAKNGLGNTYPNPMVGSVIVYEDRIIGEGWHQQAGQPHAEVNAVNSVNDQSLLD 60

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
            AT YV+LEPCSH+G++PPC+  II  GI++VV+   DP   V+GRG++ L   G  ++ 
Sbjct: 61  KATIYVSLEPCSHFGKTPPCSDLIIAKGIKKVVIGTVDPFAEVAGRGIKKLIDAGCEVLV 120

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG-----MAGCGSVPITGFISKNQ 182
            ++E E +     + T   +KR +I LK A S D  I       +    V IT   SK  
Sbjct: 121 GVLEQECQQLNKRFFTFHQKKRPYIILKWAESLDGFIAPEAKSRSSREPVWITNSYSKQL 180

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  RA+  +ILVG  TV AD+P LT R       SP RI+LD   K+S +S++   +  
Sbjct: 181 VHKWRAEEQSILVGTKTVEADNPSLTTR--DWSGKSPTRIVLDRELKISEESRVFDES-- 236

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           A  ++ TE      +     K I + + +   + ++L  L   G+ S+++EGG+    +F
Sbjct: 237 ATTLVFTEKTKESTS---STKYITVDF-NKNLITEVLQTLYKEGLQSVIIEGGSTTLQNF 292

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSP 328
           I+  L D   +++ +      GI +P
Sbjct: 293 IDQELWDEARVFKGKQNF-HNGISAP 317


>gi|331005895|ref|ZP_08329246.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [gamma
           proteobacterium IMCC1989]
 gi|330420291|gb|EGG94606.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [gamma
           proteobacterium IMCC1989]
          Length = 397

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/358 (32%), Positives = 186/358 (51%), Gaps = 37/358 (10%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S+ D RFMS A++ +      T  NP V C++VK+G VI  G     G  HAE+ AL
Sbjct: 1   MTFSADDHRFMSLAIQLAEKGRYTTRPNPCVGCVLVKNGQVISEGWHYRAGEAHAEIHAL 60

Query: 61  EEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIE---CGIRRVVVCVDDPDVRVSGRG 115
           ++   E  A   TAYVTLEPCSH GR+  CA  + +    GI RVV  ++DP+  V+G+G
Sbjct: 61  QQLPIEVKAENITAYVTLEPCSHQGRTGSCAMALADRTNTGIIRVVYGMEDPNPLVAGKG 120

Query: 116 LQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           L  L + G +V+  +ME +       +  R   +R  +  KIA S D    MA   S  I
Sbjct: 121 LAILRESGCVVEGPLMEQQAAALNQGFFRRMQSQRPWVMAKIATSIDGRTAMASGESQWI 180

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR--------LNGLQEHSPMRIILDP 226
           T   ++  V  LRAQS  I+ GI ++L D+  L+ R        ++ + +H P+R++LD 
Sbjct: 181 TSAPARRDVQRLRAQSCGIISGIDSILHDNSRLSVRREDSDLANIDDILQHPPLRVLLDT 240

Query: 227 HFKLS----LDSKIIKTALLAPVIIVTEND------DPVLALAFRKKNINIIYCDCRD-- 274
           H +++    L + I   +  A V++ T         + VL+L     +++++    +   
Sbjct: 241 HLRIADDDNLSANIFDPSSAAQVLVFTSTAVTDSKMEKVLSLNDSVGDVSVVSPMIKVEQ 300

Query: 275 ----------LKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
                     L+++LT+L  R    ++LVE GA +   FI++ LVD +I+Y++ +++G
Sbjct: 301 VATTETGHLCLEQVLTVLATRYECNTVLVETGATLLGGFIDAGLVDELIIYQAPVLLG 358


>gi|159044799|ref|YP_001533593.1| riboflavin biosynthesis protein [Dinoroseobacter shibae DFL 12]
 gi|157912559|gb|ABV93992.1| riboflavin biosynthesis protein [Dinoroseobacter shibae DFL 12]
          Length = 365

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 122/334 (36%), Positives = 181/334 (54%), Gaps = 15/334 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S D R+M  AL   R  +G +  NP+V C L+  +G V+GRG T  GG PHAEV AL +A
Sbjct: 2   SDDLRWMQVALTLGRRGLGQSWPNPAVGCVLVAPNGRVVGRGRTQSGGRPHAEVVALAQA 61

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G  ARGATAYVTLEPC+H+G++ PC   +I  G+ RVV  ++DPD RV+G+G   L   G
Sbjct: 62  GAAARGATAYVTLEPCAHHGQTGPCCDALIAAGVGRVVTALEDPDPRVAGQGHSRLRAAG 121

Query: 124 II----VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           +     V R    E ++    +L R    R  +TLK+A++ D  I  A   S  ITG  +
Sbjct: 122 VAVTEGVGRAAAREDQL---GFLNRVTLGRPMVTLKLALTLDGRIATARGESQWITGAEA 178

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H LRA+ DA+L+G GT   DDP LT R  G+    P+R++      + + S++ ++
Sbjct: 179 RRYGHALRARHDAVLIGAGTARTDDPTLTVRGVGVVRQ-PVRVVASRDLDVPIPSRLSQS 237

Query: 240 ALL-APVIIVTENDDPVLALAFRK----KNINIIY-CDCRDLKKLLTILVGRGVTSLLVE 293
               APV +    + P   +A  +    K + +    +   ++ LL  L  RG+T +  E
Sbjct: 238 VTADAPVWLCHGGEAPAERIARARAAGLKCVEVAAEAEGVSVESLLRTLAQRGLTRVYCE 297

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           GG A A   + +  VD + ++ +  VIG  G+P 
Sbjct: 298 GGGAFAAGLLRAGCVDRLAVFSAGCVIGADGLPG 331


>gi|270295600|ref|ZP_06201801.1| riboflavin biosynthesis protein RibD [Bacteroides sp. D20]
 gi|270274847|gb|EFA20708.1| riboflavin biosynthesis protein RibD [Bacteroides sp. D20]
          Length = 351

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 185/360 (51%), Gaps = 27/360 (7%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++S + ++M   ++ ++  +  T+ NP V  +IV DG +IG G     G  HAEV A+  
Sbjct: 1   MNSEEEKYMLRCIQLAQNGLCNTAPNPMVGAVIVCDGKIIGEGYHVRCGEAHAEVNAIRS 60

Query: 63  AGEEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             + +  + +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP  +V+GRG+Q L 
Sbjct: 61  VKDTSLLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCRDPFSKVAGRGIQKLK 120

Query: 121 QKG--IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TG 176
             G  +IV  ++E+E +  +  ++T    +R +ITLK A S D  I  +     P+  + 
Sbjct: 121 DAGREVIVG-VLETECRQLIRRFITFHTLRRPYITLKWAESSDRYIDYSRTDGKPVILSS 179

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
            ++   VH  RA+  AILVG  T   D+P L  R       SP+RI+LD   KLS    +
Sbjct: 180 PLTSMLVHKKRAEHSAILVGTRTAELDNPGLNVR--HWYGRSPVRIVLDRQQKLSPSLHL 237

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLL 291
              ++  P ++ TE     L         N+ Y    D     L +++ +L  RG+ SLL
Sbjct: 238 FDGSV--PTLVFTEIPHAPLP--------NVEYLPVSDYRQNILPEIMEMLYTRGLQSLL 287

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY---LEKNFMCVRRDYFGS 348
           VEGG+    SFI++ L D I +  +  ++  G     + +GY    E +F    R Y  S
Sbjct: 288 VEGGSQTLQSFIDAGLWDEIFVEEAPHLLHSGVKAPEISDGYPFATEYSFGRSFRHYTAS 347


>gi|313904567|ref|ZP_07837942.1| riboflavin biosynthesis protein RibD [Eubacterium cellulosolvens 6]
 gi|313470537|gb|EFR65864.1| riboflavin biosynthesis protein RibD [Eubacterium cellulosolvens 6]
          Length = 367

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 113/335 (33%), Positives = 171/335 (51%), Gaps = 22/335 (6%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A+  +R   G    NP V  +IV+DG +IG G     G  HAE  A +   E A GA
Sbjct: 1   MRRAIELARQGEGWCHPNPMVGAVIVRDGKIIGEGYHRKCGELHAERNAFQSLRESAEGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
             YVTLEPC H GR+PPC + II   IR+VV+   DP+ +V G+G + L + GI +V+  
Sbjct: 61  VLYVTLEPCCHVGRTPPCTEAIIGHKIRKVVIGSRDPNPKVHGKGAELLRRAGIEVVEDF 120

Query: 130 MESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  E      +F H Y+T+   +R ++ LK A++ D  I      S  ITG  ++ +V  
Sbjct: 121 LREECDALNDVFFH-YITK---RRPYVKLKYAMTADGKIATRTGASKWITGEEAREEVQR 176

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +R     I+VG GTV  DDP L CRL G ++  P+RII D    +  +S+I+++A     
Sbjct: 177 MRHACMGIMVGSGTVRKDDPMLNCRLPGGRD--PVRIICDSKLSIGENSQIMRSAEQQRT 234

Query: 246 IIVTENDDPVLALAFRKK----------NINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
           IIV    D       R++          N+     +  DL  L+  L    + S+L+EGG
Sbjct: 235 IIVAACRDVDAGFESRREILEKAGAEVWNLPKQAGEGVDLNLLMEKLGEIEIDSVLLEGG 294

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
             +A S + + +V  + ++ +  + G  G  SP+E
Sbjct: 295 GILADSALRAGIVSEVDVFTAPKIFGGRG-KSPVE 328


>gi|62185466|ref|YP_220251.1| riboflavin biosynthesis protein RibD [Chlamydophila abortus S26/3]
 gi|62148533|emb|CAH64304.1| riboflavin biosynthesis protein RibD [Chlamydophila abortus S26/3]
          Length = 368

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 171/329 (51%), Gaps = 16/329 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  A+         +  NP V C+IVK+G +IG G     G PHAE +A+  A E   G
Sbjct: 11  FMRRAIELGEKGAFSSQPNPWVGCVIVKNGRIIGEGYHEKAGQPHAEEKAIRSASESIEG 70

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DR 128
           +  YVTLEPC HYG +PPC   +I+  +  V + + DPD RVSGRG   L + GI V + 
Sbjct: 71  SEVYVTLEPCCHYGNTPPCVNLLIKYKVAAVYIALLDPDSRVSGRGAASLRKAGICVYEG 130

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + + E +  L +Y+ ++   +  + +K A + D  +      S  IT   ++  V  LRA
Sbjct: 131 LGKEEAERSLKSYIYQRTHGKPWVVIKSAATVDGQVADRDGQSQWITCPEARADVGKLRA 190

Query: 189 QSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           +S AI+VG  TVL D+P LT R     L    P+R+++D    +  ++K+  +A  +  +
Sbjct: 191 RSQAIIVGSKTVLQDNPLLTARQPSGELYPCQPLRVVVDSKGVVPPEAKVFHSAGKSLYV 250

Query: 247 IVTENDDPVLALAFRKK----NINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298
              ++ +       RKK     ++++  + +    +L +L+  L       +LVEGGAA+
Sbjct: 251 TTPQSSE-----DHRKKIEDLGVDLLVTEPQGAKVNLHELMAYLSTTPTLQVLVEGGAAL 305

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS 327
             +F+  RLV +++LY    ++G+   P+
Sbjct: 306 HTAFLKERLVHALVLYLGPKILGDQRNPT 334


>gi|332885428|gb|EGK05677.1| riboflavin biosynthesis protein RibD [Dysgonomonas mossii DSM
           22836]
          Length = 348

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 112/338 (33%), Positives = 168/338 (49%), Gaps = 16/338 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D ++M   L+ +    G  S NP V  ++V +  +IG G     G  HAEV A+    
Sbjct: 2   TVDEKYMYRCLQLALNGKGFVSPNPMVGAVVVHNDKIIGEGFHREYGKAHAEVNAIASVK 61

Query: 65  EEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           +++  + +T YV+LEPC+H G++PPCAQ II+  I  VV+   DP   VSGRG++ L   
Sbjct: 62  DKSLLKESTIYVSLEPCAHQGKTPPCAQLIIDNQIPHVVIACLDPYPAVSGRGIKMLQDA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG-----CGSVPITG 176
           GI VD  ++E E       + T Q + R +I LK A +QD  I  A          PI+ 
Sbjct: 122 GIKVDVGILEREAWELNKEFFTIQTKGRPYIYLKWAQTQDGFIDKARDEKDIPQPTPISN 181

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
             SK  VH  RA   AI++G  T + D+P LT R       +P+R+ILD   ++ LD  I
Sbjct: 182 EFSKMLVHKKRAVVPAIMIGTNTAIKDNPSLTTR--HWYGKNPVRVILDRQGRIPLDYTI 239

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
               +   V    E+   +  + F +     I  D   L+ + T L  R + S+LVEGG 
Sbjct: 240 FDGKVETIVFTEKESSPKLEKVTFIQ-----IPFDENILENIFTTLKKRKIISVLVEGGQ 294

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
            +  S I+ RL D   +  S I     G+ +P+  G++
Sbjct: 295 ELLQSIIDKRLWDEAFIEISGITFN-NGVRAPIIAGHV 331


>gi|32474082|ref|NP_867076.1| riboflavin bifunctional biosynthesis protein RibG [Rhodopirellula
           baltica SH 1]
 gi|32444619|emb|CAD74621.1| riboflavin bifunctional biosynthesis protein RibG [Rhodopirellula
           baltica SH 1]
          Length = 427

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 128/384 (33%), Positives = 191/384 (49%), Gaps = 37/384 (9%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D R+M+ A+  +    G    NP V C +V+D + IG+G     G PHAEV+AL   
Sbjct: 46  SAVDVRWMTEAIELAYQGRGKVEPNPPVGCALVRDSVCIGKGYHQRFGGPHAEVEALSSC 105

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            ++A GATAYV+LEPC H+G++PPCA  +I   + RVVV V DP  +V G G++ L   G
Sbjct: 106 -DDATGATAYVSLEPCCHHGKTPPCADALIRAKVARVVVSVVDPFDQVDGGGIEKLRAAG 164

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +V  + +  G+  L AYL R       +  K A+S D  I      S  ITG  S+  
Sbjct: 165 IEVVTGIAKEAGEELLAAYLKRVRTGMPWVIAKWAMSLDGRIATQTGESKWITGPASRGA 224

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP-------------MRIILDPHFK 229
           VH LRA  DAI VG+GTV+AD+P LT RL+ L + S              +R++      
Sbjct: 225 VHELRASVDAIAVGMGTVIADNPLLTVRLSELAKVSAAKSTHTEDRSNQLVRLVYSRSRL 284

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALA----FRKKNINIIYCDCRD----LKKLLTI 281
             L S++++TA   P  ++     P +A A        ++    C+  D    +++ L  
Sbjct: 285 PDLQSQLVQTASQTPTWLIA---GPQIANADLARLADHDVETWQCESADPIEMVQQSLLW 341

Query: 282 L------VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
           L       G  +T L+VEGG+ +  SF  +  +D +  + +   IG    P PL +  ++
Sbjct: 342 LGSKDNPRGLAMTHLMVEGGSQLLGSFAAADQIDEVHAFIAGKCIGGRSAPGPLGDPGIK 401

Query: 336 -----KNFMCVRRDYFGSDVCLEY 354
                 +    R D F +DV L Y
Sbjct: 402 ALSDATSLRMSRVDSFDNDVRLIY 425


>gi|213965573|ref|ZP_03393767.1| riboflavin biosynthesis protein RibD [Corynebacterium amycolatum
           SK46]
 gi|213951732|gb|EEB63120.1| riboflavin biosynthesis protein RibD [Corynebacterium amycolatum
           SK46]
          Length = 350

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/322 (34%), Positives = 163/322 (50%), Gaps = 33/322 (10%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGE 65
           DA+ M+ A+   +   G T  NP + C+I+   GI +G   T   G  HAE QALE AG 
Sbjct: 15  DAQAMALAIEAGQRVRGTTYPNPPIGCVILDTAGIAVGVAGTEPVGGRHAEPQALEMAGP 74

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            A+G TA VTLEPC+H GR+PPC + +   G+ RV+  V DP+   +G G +WL  KGI 
Sbjct: 75  RAQGGTAVVTLEPCNHIGRTPPCTEALAAAGVSRVIFAVADPNPVAAG-GSEWLRYKGIE 133

Query: 125 IVDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
           +V+     +    +L  +L  Q  +R HITLK A + D         S  ITG  ++ +V
Sbjct: 134 VVEEFQRDQVAAGYLRPWLHWQRTRRPHITLKTAGTLDGFAAATDRTSQWITGEQARARV 193

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS--PMRIILDPHFKLSLDSKIIKTAL 241
           H  RA+  AI+VG GTVLAD+P LT R    +E S  P+RI +    +++ D+ I     
Sbjct: 194 HADRARRQAIVVGTGTVLADNPRLTARTPDGEELSTQPLRIAIGTS-EVAADANI----- 247

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
                                +  N  +    D++  L  +   G+  +LVEGG  +A +
Sbjct: 248 ---------------------RGDNFRHIRTHDVEVALETMADMGLIDVLVEGGPRLASA 286

Query: 302 FINSRLVDSIILYRSQIVIGEG 323
           F+ +  VD+I  Y +   +G G
Sbjct: 287 FLEADAVDAIESYIAPAFLGAG 308


>gi|34764917|ref|ZP_00145265.1| DIAMINOHYDROXYPHOSPHORIBOSYLAMINOPYRIMIDINE DEAMINASE;
           5-AMINO-6-(5-PHOSPHORIBOSYLAMINO)URACIL REDUCTASE
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27885744|gb|EAA23138.1| DIAMINOHYDROXYPHOSPHORIBOSYLAMINOPYRIMIDINE DEAMINASE;
           5-AMINO-6-(5-PHOSPHORIBOSYLAMINO)URACIL REDUCTASE
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 223

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/207 (42%), Positives = 123/207 (59%), Gaps = 1/207 (0%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D ++M+ A+  ++  +G  + NP V  +IVKDG +IG G     G PHAEV AL EAGE
Sbjct: 5   LDEKYMARAIELAKRGIGGVNPNPLVGAVIVKDGKIIGEGWHKKFGGPHAEVWALNEAGE 64

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            A GAT YVTLEPCSH G++PPCA+ I+E GI+R VV   DP+  V+G+G++ +   GI 
Sbjct: 65  NAEGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVVACIDPNPLVAGKGIKIMEDAGIE 124

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V+  ++E E K     +L     K  ++ LK  ++ D  I      S  IT  I++ +V 
Sbjct: 125 VELGVLEKEAKDVNKIFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKVQ 184

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL 211
            LR +  AI+VGI TVL D+P L   L
Sbjct: 185 FLRTKFMAIMVGINTVLKDNPSLDSDL 211


>gi|196231665|ref|ZP_03130522.1| riboflavin biosynthesis protein RibD [Chthoniobacter flavus
           Ellin428]
 gi|196224137|gb|EDY18650.1| riboflavin biosynthesis protein RibD [Chthoniobacter flavus
           Ellin428]
          Length = 344

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/319 (34%), Positives = 165/319 (51%), Gaps = 28/319 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM AAL  +R  +G TS NP+V  +IV+ G +I RG     G PHAE++AL    + 
Sbjct: 3   DEEFMRAALAEARRGLGQTSPNPAVGAVIVRAGKIIARGYHHRAGLPHAEIEALRALPKP 62

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           A  RGAT YVTLEPCS +GR+PPC + II  G RRVV+   DP+   +GRG++ L   GI
Sbjct: 63  ALARGATIYVTLEPCSTHGRTPPCVEAIIAAGFRRVVIGTIDPNPSHAGRGVKLLRDTGI 122

Query: 125 IVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V   ++E+E +    A+    V K   +  K  +S D  I         +T  +++   
Sbjct: 123 AVTTDVLEAECRALNAAFNHWIVTKMPLVIAKAGMSLDGRITRPPGEGQWLTNAVARKDA 182

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           H LR+Q DAIL+G  T+  D+P LT R + G ++  P RI++    KL  ++ +      
Sbjct: 183 HRLRSQVDAILIGAETLRQDNPRLTVRGVRGARQ--PWRIVITRSGKLPKEAHLFT---- 236

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
                   ++     L +R+K++  +    RDL K       R +TS+++EGG  V    
Sbjct: 237 --------DEHRERTLVYREKSLRTV---LRDLGK-------RQITSVMIEGGGGVLGEA 278

Query: 303 INSRLVDSIILYRSQIVIG 321
            + RLV     Y + ++ G
Sbjct: 279 FDRRLVQRAHFYLAPLLCG 297


>gi|311745056|ref|ZP_07718841.1| riboflavin biosynthesis protein RibD [Algoriphagus sp. PR1]
 gi|311302325|gb|EAZ81787.2| riboflavin biosynthesis protein RibD [Algoriphagus sp. PR1]
          Length = 340

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 109/324 (33%), Positives = 169/324 (52%), Gaps = 15/324 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR- 68
           +M  AL  +    G  S NP V C+IVK+  +IG G     G  HAEV A+    ++   
Sbjct: 6   YMRRALELAELGRGKVSPNPVVGCVIVKEDKIIGEGYHQKYGEAHAEVNAVNSVEDQTDI 65

Query: 69  -GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            G+T YVTLEPC+H+G++PPCA  +++  + +VV+   D +  V G+G+Q L + GI V+
Sbjct: 66  VGSTVYVTLEPCAHFGKTPPCANLLVDKKVGKVVIAAFDSNPLVGGKGIQILEEAGIEVE 125

Query: 128 R-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +++ E +     + T+  +KR ++ LK A +QD  +  +   S  I+   S+  VH  
Sbjct: 126 TGLLQEEARWQNRRFFTQIEKKRPYVILKWAQTQDGFVARSDYSSKWISNSSSRRLVHQW 185

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA+ DAI+VG  T   DDP L  R       +P+R+++D   +LS   K+   A+  P I
Sbjct: 186 RAEEDAIMVGKNTAKYDDPALNVR--DWVGKNPLRLVIDSKLELSQSLKLFDQAV--PTI 241

Query: 247 IV-TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
              T+  +    L F K            L ++L  L  R + SLLVEGG+ + + FI  
Sbjct: 242 CYNTQKTEESGNLEFVKLKPGF------SLDQILEDLHNRNIQSLLVEGGSFLLNKFIEL 295

Query: 306 RLVDSIILYRSQIVIGEGGIPSPL 329
            L D   ++ S+   GE GI +PL
Sbjct: 296 GLWDEARIFTSRNKFGE-GIKAPL 318


>gi|218296564|ref|ZP_03497292.1| riboflavin biosynthesis protein RibD [Thermus aquaticus Y51MC23]
 gi|218243106|gb|EED09638.1| riboflavin biosynthesis protein RibD [Thermus aquaticus Y51MC23]
          Length = 377

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/380 (30%), Positives = 185/380 (48%), Gaps = 37/380 (9%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   D RF+  AL+ +    G T  NP V  ++V+DG ++G G     G PHAE  ALE 
Sbjct: 1   MRDLDERFLRRALQIAERARGHTHPNPLVGAVVVRDGEIVGEGYHPRAGAPHAEALALEA 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGAT YV+LEPC H+GR+PPC+  +I  G+ RVV+   DP+    G G+  L   
Sbjct: 61  AGERARGATVYVSLEPCDHHGRTPPCSLALIRAGVARVVLAARDPNPLAQG-GMARLLAA 119

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ V+  ++E E +    A+ T     R  + LK A++ D  +      +  ++   S+ 
Sbjct: 120 GVAVEAGLLEEEAQDQNEAFFTALRRGRPFVLLKAALTLDGRVATRLGDARYVSSEASRR 179

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFKLS 231
             H  R    A++VG+GTVL DDP LT R    +             P++++LD   +  
Sbjct: 180 VAHAYRQWLPAVMVGVGTVLQDDPALTVREPDFRPFPLMLEPPPLRDPLKVVLDTEARTP 239

Query: 232 LDSKIIKTALL---APVIIVTENDDPVLALAFRKKNINIIYCDCRDL---------KKLL 279
             +++ +       A V+I+     P      R K +        +L         ++ L
Sbjct: 240 PTARLFRPGPRGERARVLILAGEGAP----KERLKALEAAGARVEELPREGGRVSPERAL 295

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-LEK-- 336
            +L   G+  +L+EGG  +A +F+   LVD + L+ +  ++GEG     L EG+ +E+  
Sbjct: 296 ALLRAEGIDGVLLEGGPGLAGAFLARGLVDKLALFLAPKLLGEG---RGLLEGFGVERMA 352

Query: 337 ---NFMCVRRDYFGSDVCLE 353
                   RR++ G D+ LE
Sbjct: 353 EALRLRLHRREWLGDDLWLE 372


>gi|330996373|ref|ZP_08320256.1| riboflavin biosynthesis protein RibD [Paraprevotella xylaniphila
           YIT 11841]
 gi|329573231|gb|EGG54845.1| riboflavin biosynthesis protein RibD [Paraprevotella xylaniphila
           YIT 11841]
          Length = 358

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 122/336 (36%), Positives = 174/336 (51%), Gaps = 24/336 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG-- 64
           D ++MS  ++ +R      + NP V  +IV DG +IG G     G PHAEV A+   G  
Sbjct: 4   DEKYMSRCIQLARNGFYGAAPNPMVGAVIVHDGKIIGEGYHVRCGGPHAEVNAIRSVGNP 63

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E  + +T YV+LEPCSHYG++PPCA  I+E GI RVVV   DP  +V+GRG++ L + GI
Sbjct: 64  ELLKESTIYVSLEPCSHYGKTPPCADLIVEKGIPRVVVGCMDPFAKVAGRGIRKLQEAGI 123

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAG--------CGSVPI 174
            V   ++E+E       ++T    +R +ITLK A S D  M G+            S P 
Sbjct: 124 EVTVGVLEAECLALNRRFMTFHTHRRPYITLKWAESADGFMDGLRTDYEKEKPYAFSTPY 183

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           T  +    VH  RA   AILVG  T LAD+P L  RL      SP+R+++D +  L    
Sbjct: 184 TRML----VHRCRAGHQAILVGRQTALADNPLLNLRL--WPGKSPLRLVVDRNGSLPKHL 237

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD-CRD-LKKLLTILVGRGVTSLLV 292
            +        V +   +  P+      +  +  +  D  RD L ++L  L    V SLLV
Sbjct: 238 ALFNDGAETRVYLDALSVHPLYG---EQAGVTCVRLDFSRDILPQVLDDLYHLSVQSLLV 294

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
           EGG  +  SFI++ L D I + +S + + E G+PSP
Sbjct: 295 EGGRRLLESFISAGLWDEIRVEQSPVWLKE-GVPSP 329


>gi|300769800|ref|ZP_07079680.1| riboflavin biosynthesis protein RibD [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300763251|gb|EFK60067.1| riboflavin biosynthesis protein RibD [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 350

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/351 (30%), Positives = 170/351 (48%), Gaps = 17/351 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           +   R+M   L  +    G  S NP V  +IV +  +IG G T+  G PHAEV A+++  
Sbjct: 2   NMQERYMQRCLELALLGAGTVSPNPMVGAVIVHENKIIGEGYTSPYGGPHAEVNAIQQVK 61

Query: 65  EEA--------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           ++           +  YV+LEPC+H+G++PPCA  I++  +R+V +   DP  +V+G+GL
Sbjct: 62  DQYPDSADRLLEESDMYVSLEPCAHFGKTPPCANLIVKHNLRKVYIACMDPFAQVNGKGL 121

Query: 117 QWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
             L + GI V+  ++E E       + TR  + R +I LK A + D  +         I+
Sbjct: 122 GILQEAGIEVEVGLLEKEALWLNRRFFTRVRQNRPYIILKWAETADGYMAKNTDEQAWIS 181

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
              SK  VH  R++ DAILVG  T L D+P LT R    +  +P R+++D    +   + 
Sbjct: 182 NEASKQLVHKWRSEEDAILVGTRTALIDNPSLTVR--EWEGSNPKRVLVDKQLSVPETAA 239

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
           I        V    + D        R K I +   D    + +L  L    + S+++EGG
Sbjct: 240 IFSEDADTIVFNAVKTD-----WQGRIKYIELENYDLYLPQNILYQLYLMDIQSVIIEGG 294

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
           A     FI++ L D   + +S+ V  E GI +P+ EG L++       D +
Sbjct: 295 AKTLQHFIDAGLWDEARVIKSK-VFWEDGIKAPVIEGELKEQHTVASDDVY 344


>gi|312623117|ref|YP_004024730.1| riboflavin biosynthesis protein ribd [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203584|gb|ADQ46911.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 371

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/313 (32%), Positives = 162/313 (51%), Gaps = 12/313 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
           + +M+ AL  ++    L   NP V C+IVK+G VIG+G     G  HAEV A+E+A   G
Sbjct: 7   SYYMNMALELAKEASPLVLPNPRVGCVIVKNGTVIGKGYHQKYGEKHAEVLAIEDAIKNG 66

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
              + +T YVTLEPC HYG+  PC + II+ GI+RVV+   DP+  V+G+G+Q L Q G 
Sbjct: 67  YLLKNSTMYVTLEPCCHYGKQLPCTEAIIKSGIKRVVIATKDPNPLVNGKGIQILKQHGT 126

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +++ +++ E +     +         +I +K+A S D  I +                V
Sbjct: 127 EVIEGVLQKEAESINKDFFKYMKTGIPYIAIKVAQSIDGKIAIPSNKRFLFNTEEENVFV 186

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA-LL 242
           H LR +  A LV + TV++D+P L  R  G     P+R++LD   ++ L+  I+KT+   
Sbjct: 187 HSLRQKYMATLVSVNTVISDNPILNARY-GQIVRQPIRVVLDSKLRIPLECNIVKTSDKY 245

Query: 243 APVIIVTEN-DDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296
           +  I+ +EN +D        +K I II+         DL      L  + + S+LVEGG+
Sbjct: 246 STYIVCSENVNDTQKIELLSQKGIKIIFAKSSEDGHLDLLDTFLKLAQQKIVSVLVEGGS 305

Query: 297 AVAHSFINSRLVD 309
            +  S +  R+ D
Sbjct: 306 LLNFSLLKQRIAD 318


>gi|78188601|ref|YP_378939.1| riboflavin biosynthesis protein RibD [Chlorobium chlorochromatii
           CaD3]
 gi|78170800|gb|ABB27896.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Chlorobium chlorochromatii CaD3]
          Length = 366

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 118/358 (32%), Positives = 186/358 (51%), Gaps = 19/358 (5%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67
           +M  AL  +    G  S NP V  L+V++G +IG G     G  HAEV A+     EA  
Sbjct: 9   YMQRALELALRGAGRVSPNPMVGALLVQEGEIIGEGWHERYGEAHAEVNAIAAVTNEAWL 68

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           R AT YVTLEPCSH+G++PPC+  II   I RVVV   DP   V+GRG+  L   GI ++
Sbjct: 69  REATLYVTLEPCSHFGKTPPCSDLIIAKQIPRVVVGCRDPFPAVAGRGIAKLRAAGIEVI 128

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
           + ++E+E      A++         +TLK+A + D  +      S  ITG  ++ +VH L
Sbjct: 129 EGVLEAECLQSNEAFIKSHTVGLPFVTLKLAQTLDGKLATVTGASRWITGEEARAEVHRL 188

Query: 187 RAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           R+  DA+LVG  T LAD+ +LT R  NG    +P+R++LD   +L L+S I      AP 
Sbjct: 189 RSVYDAVLVGGATALADNSQLTVRQANG---RNPLRVVLDRSLQLPLESLIFNHE--APT 243

Query: 246 IIVT----ENDDPVLALAFRKKNINII--YCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           ++ T    ++   V AL     +++ +    +   L+++L  L  R + S+LVE G+ + 
Sbjct: 244 LLFTSLSQQHSPKVEALQKLGVSVHAVSESAEGLQLREVLEELHHRHILSVLVESGSRLG 303

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR----DYFGSDVCLE 353
            + + +  VD ++++ +  + G  G+ +    G    +     R     +FG D+ LE
Sbjct: 304 AALLQAGFVDKLLIFIAPKLFGGDGLSAFAPLGVTVPDEAIALRFELPRFFGKDLLLE 361


>gi|120612202|ref|YP_971880.1| riboflavin biosynthesis protein RibD [Acidovorax citrulli AAC00-1]
 gi|120590666|gb|ABM34106.1| riboflavin biosynthesis protein RibD [Acidovorax citrulli AAC00-1]
          Length = 377

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 113/333 (33%), Positives = 165/333 (49%), Gaps = 15/333 (4%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCPHAEVQAL 60
           P S  D   M  AL+ +   +  TS NP V C++V  G  +IG+G T   G PHAEV AL
Sbjct: 7   PASPAD--LMQLALQLAEDGLYRTSPNPRVGCVLVNAGQQIIGQGSTQRAGGPHAEVMAL 64

Query: 61  EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            +A   G    GATAYVTLEPCSH+GR+ PC   ++E GI RVV  + DP+  V+G+G +
Sbjct: 65  RDARARGHATHGATAYVTLEPCSHHGRTGPCCDALVEAGIARVVASLADPNPLVAGQGFE 124

Query: 118 WLSQKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
            L   G+ V+    +     L+  + +R       + +K A S D    +    S  IT 
Sbjct: 125 RLRGAGVQVEVGPGAAASRELNIGFFSRMQRGLPWVRMKAATSLDGFTALPDGTSQWITS 184

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
             ++   H  RA++ A+L GIGT+LADDP L  R        P   I+D H +    ++ 
Sbjct: 185 PEARADGHAWRARACAVLTGIGTILADDPRLDVR-EAETPRQPHLAIIDSHLQTPPGARF 243

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILV-GRGVTSL 290
            +      ++I T + D   A   + +   +I          DL  +L  L   R V  L
Sbjct: 244 FEVPQRQ-ILIYTASADSAKAAVLQDRGAQVIAAPMAGDGHIDLHWVLQDLARQRSVNEL 302

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            VE GA +  + + +RLVD I+LY +  ++G G
Sbjct: 303 HVEAGARLNGALVRARLVDEILLYMAPTLLGAG 335


>gi|262382448|ref|ZP_06075585.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 2_1_33B]
 gi|262295326|gb|EEY83257.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 2_1_33B]
          Length = 345

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 107/312 (34%), Positives = 169/312 (54%), Gaps = 19/312 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + ++M+  +  ++   G  S NP V  ++V  G +IG G     G  HAEV A+    +E
Sbjct: 5   EEKYMARCIELAKGGRGNVSPNPMVGAVVVHKGRIIGEGFHRKCGEAHAEVNAIASVKDE 64

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +  + +T YV+LEPCSHYG++PPCA+ II  GI RVVV   DP   VSGRG++ L + G+
Sbjct: 65  SLLKDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGCLDPFPEVSGRGVRMLREAGV 124

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG-SVPITGFISKNQ 182
            +V  +ME E ++   A++T Q + R +I LK A S+D  I       S P+T   S   
Sbjct: 125 EVVTGVMEEEARVLNKAFMTLQTKGRPYIILKWAQSEDGFIDRLRTDVSEPVTVLSSPET 184

Query: 183 ---VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
              VH LR++  AI+VG  T L D+P L  R      +SP+R++LD    +    +++  
Sbjct: 185 SRLVHKLRSEVAAIMVGTRTALLDNPSLNVR--HWSGNSPVRVVLDRRLVIPDSYRLLNG 242

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAA 297
           +  +  +I TE +         ++N+  I  D     ++++L  L  R + SLLVEGG  
Sbjct: 243 S--SRTLIFTEKE------VENRENVEYIRIDFEGPVIRQVLDHLAVRKLDSLLVEGGTQ 294

Query: 298 VAHSFINSRLVD 309
           + +SF+ + + D
Sbjct: 295 LINSFVEADVWD 306


>gi|157413823|ref|YP_001484689.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. MIT 9215]
 gi|157388398|gb|ABV51103.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. MIT 9215]
          Length = 364

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 174/357 (48%), Gaps = 9/357 (2%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           ++M  A+  +      TS NP V  +I+ K+G +I  G     G PHAE  A     ++A
Sbjct: 10  KWMKRAIFLASLGKNTTSPNPRVGAVILDKNGKLISEGFHFKAGMPHAEAMAFNNLKKDA 69

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           RG   YV LEPC H+GR+PPC   +I  GI+R  + ++DPDVRV+G+G++ L + GI V 
Sbjct: 70  RGGAIYVNLEPCCHHGRTPPCVDKVISSGIKRAYISIEDPDVRVAGKGIKKLEEAGIQVH 129

Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             + + E      A++ R   K++    K A+S D  I +    S  IT   S+  VH  
Sbjct: 130 LGLCKKESLDLNKAFIYRNTTKKAFGVFKWAMSIDGRIALKNGKSKWITNEESRALVHSF 189

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA+ DAI++G  T+  D+P LT R  GL+   P+R++      L   S +        ++
Sbjct: 190 RAEFDAIIIGGNTLRRDNPLLTTR--GLKNPEPLRVVFTKSLDLPTKSNLWDCNKAKTLV 247

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           I   +      L    K++ +      + + +  IL  RG  ++L E G  +A + I + 
Sbjct: 248 IYDSSTANENYLTRIPKSVEVEKVSSDNPELISKILAKRGCNNVLWECGPRLATAAIKTN 307

Query: 307 LVDSIILYRSQIVIGEGGIPSPL---EEGYLEKNFMCVRRD--YFGSDVCLEYIGKN 358
            +  II + +  ++G     +PL   E G + +     +      G D+C++ + KN
Sbjct: 308 CIQEIITFIAPKILGGENSMNPLGDFEFGEMHEIIKLSKSQLSLIGDDICVKSLFKN 364


>gi|73662304|ref|YP_301085.1| riboflavin specific deaminase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72494819|dbj|BAE18140.1| riboflavin specific deaminase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 347

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 165/317 (52%), Gaps = 9/317 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           +++++ A++ ++   G T  NP V  ++V  G ++G G     G  HAEVQAL+ A + A
Sbjct: 2   SQYLNYAIQLAQMVEGQTGLNPPVGAVVVNRGRIVGIGAHLKKGDKHAEVQALDMAKDNA 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           +G T Y++LEPC+H+G +PPC   IIE GI RVV  V D  +  +G  +  L + GI V+
Sbjct: 62  KGGTIYISLEPCTHFGSTPPCVNKIIEAGINRVVYAVKDTTLPSNGDSI--LQEAGIDVE 119

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
              + + +     +   + +    +T+K++ S D         S  IT  + K  V  LR
Sbjct: 120 FRHQPDAENLYKDFFITKRQSVPMVTVKVSCSLDGKQATDTGESKWITNKLVKKDVFKLR 179

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
              DA+L G GT+ AD+P+ T R+   +  +P+++IL  +  +  +  I K     P+ I
Sbjct: 180 HHHDAVLTGSGTLNADNPQYTTRIE--EGKNPIKVILAQNGNIDFNLDIFKNT-NTPIWI 236

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            T+N+    AL    +++ II      ++ ++  L  +G+  LLVE G  V   F+ S  
Sbjct: 237 YTQNE----ALVTDIEHVEIIQLTNCSVENIMKNLYEKGIGRLLVEAGPTVTSEFLQSNY 292

Query: 308 VDSIILYRSQIVIGEGG 324
            + +I+Y +  +IG  G
Sbjct: 293 TNKLIIYYAPKIIGGSG 309


>gi|317474402|ref|ZP_07933676.1| riboflavin biosynthesis protein RibD [Bacteroides eggerthii
           1_2_48FAA]
 gi|316909083|gb|EFV30763.1| riboflavin biosynthesis protein RibD [Bacteroides eggerthii
           1_2_48FAA]
          Length = 347

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 119/358 (33%), Positives = 179/358 (50%), Gaps = 48/358 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + ++M   ++ ++  +  T+ NP V  +IV DG +IG G     G  HAEV A+    E 
Sbjct: 3   EEKYMRRCIQLAQNGLCNTAPNPMVGAVIVCDGKIIGEGYHIRCGEAHAEVNAIRSVKEP 62

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG- 123
           +  + +T YV+LEPC+HYG++PPCA  IIE  I R+V+   DP  +V+GRG+Q L   G 
Sbjct: 63  SLLKRSTIYVSLEPCAHYGKTPPCADLIIEKQIPRIVIGCQDPFAKVAGRGIQKLKDAGR 122

Query: 124 -IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI------GMAGCGSVPITG 176
            +IV  ++E + K  +  ++T     R +ITLK A S D  I      G     S P+T 
Sbjct: 123 EVIVG-VLEEDCKNLIRRFVTFHSLHRPYITLKWAESADKHIDKCRKDGKPVILSTPLTS 181

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
            +    VH  RA+  AI+VG  T   D+P LT R    Q  SP+RI++D   +LS    +
Sbjct: 182 ML----VHKRRAEHSAIMVGTHTAELDNPSLTVR--NWQGQSPVRIVIDRQQRLSPSLHL 235

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKK------NINIIYCDCRD--LKKLLTILVGRGVT 288
                          DD +  L F  +      N   I  D +   L +++  L  +G+ 
Sbjct: 236 F--------------DDSIRTLVFTGQPHAAFPNTEYIVIDFQQNILPQIMQHLYAQGLQ 281

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP--------LEEGYLEKNF 338
           SLLVEGG+ +  SFIN+ L D I +  S + +   G+ +P        + E Y  +NF
Sbjct: 282 SLLVEGGSYLLQSFINAELWDEIFVEESPLKLF-SGVKAPEIGNKIPYVNEQYFGRNF 338


>gi|241763274|ref|ZP_04761331.1| riboflavin biosynthesis protein RibD [Acidovorax delafieldii 2AN]
 gi|241367549|gb|EER61836.1| riboflavin biosynthesis protein RibD [Acidovorax delafieldii 2AN]
          Length = 368

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/320 (33%), Positives = 164/320 (51%), Gaps = 14/320 (4%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARG 69
           ALR +   + +++ NP V C++V  DG ++G+G T   G PHAEV AL +A   G + RG
Sbjct: 11  ALRQAARALFISNPNPRVGCVLVDSDGTILGKGFTQQAGGPHAEVMALRDAATGGRDVRG 70

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           ATAYVTLEPC+H GR+ PC+  +I  GI RVV  ++DP+  V+G+G   L   G+ V+  
Sbjct: 71  ATAYVTLEPCAHQGRTGPCSDALISAGIGRVVASIEDPNPLVAGQGFARLRAAGVAVEVG 130

Query: 130 MES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
             + E +     + +R V     +  K A S D    ++   S  IT   ++   H  RA
Sbjct: 131 PGACESRELNIGFFSRMVRGVPWVRAKTAASLDGATALSNGASQWITSPAARADGHAWRA 190

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           ++ A+L GIGTVL D+P L  R   LQ    P  +++D   +   D+ +        +  
Sbjct: 191 RACAVLTGIGTVLDDNPRLDVR--ALQTPRQPHVVVVDSQLQTPPDAHLFIAERACYIYT 248

Query: 248 VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
             +ND  V   A + +   +I+        DL  +L  L  RG+  L VE G  +  S +
Sbjct: 249 AVQND--VKEAALQARGATVIHLPGPHGKVDLPAMLRDLAQRGMNELHVEAGHKLTGSLL 306

Query: 304 NSRLVDSIILYRSQIVIGEG 323
              LVD +++Y +  ++G G
Sbjct: 307 REGLVDEMLVYLAPTLLGPG 326


>gi|239816083|ref|YP_002944993.1| riboflavin biosynthesis protein RibD [Variovorax paradoxus S110]
 gi|239802660|gb|ACS19727.1| riboflavin biosynthesis protein RibD [Variovorax paradoxus S110]
          Length = 375

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/323 (35%), Positives = 162/323 (50%), Gaps = 12/323 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GE 65
           FM+ AL  +R     T  NP V C++V  +G VIG+G T   G PHAEV AL +A   G 
Sbjct: 10  FMAQALDLARQAGPETDPNPRVGCVLVDANGAVIGQGRTQQVGGPHAEVMALRDAAARGH 69

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
              GATA+VTLEPC+H+GR+ PC   +   GI RVV  + DP+  V+G+G + L   G+ 
Sbjct: 70  SVAGATAFVTLEPCAHHGRTGPCCDALAAAGIGRVVASLADPNPLVAGKGFERLRAAGVA 129

Query: 126 VDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V+    +E    L+  + +R V K   + LK A S D   G+    S  IT   ++   H
Sbjct: 130 VEVGPGAEEARELNIGFFSRMVRKTPWVRLKAAASLDGKTGLRNGVSQWITSEPARADGH 189

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             RA++ A+L G+GTVL DDP L  RL       P  +I+D   +    ++I       P
Sbjct: 190 AWRARASAVLTGVGTVLEDDPRLDVRLVETTRQ-PHVVIVDSQLQTPPGARIFMAGR--P 246

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300
           V I     D   A A + +   I Y        DL  +L  L  R V  L VE G  +  
Sbjct: 247 VWIYAAAQDEAKAAALQARGATIAYLPNAQGKVDLAAMLRDLARREVNELHVESGHKLNG 306

Query: 301 SFINSRLVDSIILYRSQIVIGEG 323
           S +   LVD +++Y +  +IG+G
Sbjct: 307 SLLREGLVDELLVYLAPKLIGDG 329


>gi|312877999|ref|ZP_07737939.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795234|gb|EFR11623.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 371

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/313 (32%), Positives = 164/313 (52%), Gaps = 12/313 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
           + +M+ AL  ++    L   NP V C+IVK+G +IG+G     G  HAEV A+E+A   G
Sbjct: 7   SYYMNMALDLAKKASPLVLPNPRVGCVIVKNGTIIGKGYHQKYGEKHAEVLAIEDAIKNG 66

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
              + AT YV+LEPC H+G+ PPC + II+ GI++VVV   DP+  V+G G+Q L Q GI
Sbjct: 67  YLLKNATMYVSLEPCCHFGKQPPCTEAIIKSGIKKVVVATRDPNPLVNGNGIQILKQHGI 126

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +V+ +++ E +     +     +   +  +K+A S D  I          +       V
Sbjct: 127 EVVEGVLQKEAESINKDFFKYIKKGIPYTAIKVAQSIDGKIAKPSNKRFLFSTEEENVFV 186

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA-LL 242
           H LR +  A LV + TV++D+P L  R  G     P+R++LD   ++ L+  I+KT+   
Sbjct: 187 HSLRQKYMATLVSVNTVISDNPILNARY-GEIVRQPIRVVLDTKLRIPLECNIVKTSDEY 245

Query: 243 APVIIVTEN-DDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296
           +  I+ +EN +D        +K I II+         DL    + L  + + S+LVEGG+
Sbjct: 246 STYIVCSENVNDTQKIDLLSQKGIKIIFAKSSEDGHLDLSDAFSKLAQQKIVSVLVEGGS 305

Query: 297 AVAHSFINSRLVD 309
            +  S +  R+ D
Sbjct: 306 LLNFSLLKQRIAD 318


>gi|261417115|ref|YP_003250798.1| riboflavin biosynthesis protein RibD [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373571|gb|ACX76316.1| riboflavin biosynthesis protein RibD [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302326859|gb|ADL26060.1| riboflavin biosynthesis protein RibD [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 421

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 125/416 (30%), Positives = 189/416 (45%), Gaps = 74/416 (17%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
            FM  AL  + + +G +  NP+V  ++VKDGIV+G+G T   G  HAEV AL +AGE AR
Sbjct: 7   NFMQFALEQAFFAIGESRPNPAVGAVVVKDGIVVGKGRTQRPGSAHAEVMALRDAGELAR 66

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           GA+ +VTLEPC HYGR+PPC + IIE GI++V     DP+  V G+  + L + G+ V  
Sbjct: 67  GASIFVTLEPCCHYGRTPPCTKAIIEAGIQKVYFAHSDPNPVVHGKSRKILEEAGVEVHE 126

Query: 129 MM------------------------------------ESEG-------KIFLHAYLTRQ 145
            +                                    E+EG       + +  AY    
Sbjct: 127 GVDACILACVEDCSNGESCTECRVFEFTSSLPLDKASREAEGLAVFAEVERYFEAYDYFV 186

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV----HLLRAQSDAILVGIGTVL 201
             KR+ + +K AVSQD  +G        +   I+K       H LRA SDA+LVG GT+L
Sbjct: 187 STKRTFVEVKSAVSQDGFMGCVDKAGNHLPLAITKQGANCWNHELRAMSDAVLVGAGTLL 246

Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS----KIIKTALLAPVIIVTENDDPVLA 257
           AD+P L  R      ++P++I+   H + + D     KI   +   P++        +L 
Sbjct: 247 ADNPGLDVRYAA--GNNPVKIVWAGHHEFTADEISRLKIFSASDAKPIVFSCVAQPKLLN 304

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV--------- 308
           +A     +N  + +  + + ++  L  RG+  L+VE GA +A    N   V         
Sbjct: 305 VAECVILLNDSFAE--NWRAMVDDLSARGMHRLMVEPGAGLARELFNGAAVAQSQNAQPL 362

Query: 309 -DSIILYRS---------QIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
            + + L+RS         + +I  G + + LE   L  N +       G DV   Y
Sbjct: 363 WNRLDLWRSTDSSVDIALENLIESGAVKAGLEYPELPANIVAKESAVIGPDVLTVY 418


>gi|89891631|ref|ZP_01203135.1| riboflavin biosynthesis protein RibD [Flavobacteria bacterium
           BBFL7]
 gi|89516178|gb|EAS18841.1| riboflavin biosynthesis protein RibD [Flavobacteria bacterium
           BBFL7]
          Length = 337

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 113/360 (31%), Positives = 173/360 (48%), Gaps = 39/360 (10%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCPHAEVQALEEA---- 63
           ++M   L+ ++  +G T  NP V  +IV +   +IG G     G PHAEV A+ +A    
Sbjct: 6   KYMQRCLQLAQNGLGTTYPNPLVGSVIVSENDEIIGEGWHLKSGEPHAEVNAVRDAEKKG 65

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
             G+    AT YV LEPCSH G++PPCA  I++ G ++VVV   DP  +V+G+G+  + +
Sbjct: 66  YDGDAFAKATIYVNLEPCSHTGKTPPCASMIVQKGFKKVVVGTLDPHDKVAGKGITIIEK 125

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS---VPITGF 177
            GI +V  ++E E       + T    +R ++ LK A + D  I  A       V IT  
Sbjct: 126 AGIEVVVGILEKECNELNKRFFTFHRRQRPYVILKWAETSDGFIAPATKNEQQPVWITNK 185

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            S+   H LRA+ DAILVG  TV+ D+P LTCR       +P R+ILD    ++ D +++
Sbjct: 186 YSRQLSHQLRAEEDAILVGAKTVIDDNPSLTCR--DWSGKNPTRVILDSRNSITSDYQVM 243

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
             A             P L L     N            ++L  L    V S+++EGG  
Sbjct: 244 DDAA------------PTLKLQLSSSNT----------LEILNSLYQNNVQSVIIEGGTT 281

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
              SFI++ L D    +    V+   G+ +P+ +G    ++  + R    +DV   Y  K
Sbjct: 282 TIQSFIDTGLWDEAYQFMGTEVLFHEGLQAPVLKG----DYSMLYRKMIANDVLKIYRKK 337


>gi|162452084|ref|YP_001614451.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Sorangium cellulosum 'So ce 56']
 gi|161162666|emb|CAN93971.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Sorangium cellulosum 'So ce 56']
          Length = 381

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 118/335 (35%), Positives = 175/335 (52%), Gaps = 12/335 (3%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQAL 60
           P    DA  M  A+  +  H  + S NP V  +++   G V+     A  G  HAE  AL
Sbjct: 8   PDPELDAAMMRLAIEEA--HKAMPSPNPPVGAVVLNAAGEVVAVAHHARAGEEHAEGLAL 65

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AG+ ARG T YVTLEPC+H GR+PPC   ++  GI+RVVV   DP+  V G G Q LS
Sbjct: 66  AAAGDAARGGTLYVTLEPCNHEGRTPPCVDAVLSAGIKRVVVGAPDPNPSVVGGGAQRLS 125

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             G+ VD  +  +E +  +  +         HI LK+A+S D  I      S  +TG  +
Sbjct: 126 DAGLAVDVGVAGAEARALIAPWTKFITTGIPHIALKLALSLDGRIATRTGASKWVTGPEA 185

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSKII 237
           + +V  LR++ DA+ +GIGT LADDP LT R + L     SP+R++ D   +L L +++ 
Sbjct: 186 RAKVQELRSRHDAVAIGIGTALADDPRLTLRESALAPGGRSPIRLVFDTRLRLPLHTRLA 245

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIY-----CDCR-DLKKLLTILVGRGVTSLL 291
           +TA   P  ++T  D P  A         ++       + R D+   + +   +G+ S+L
Sbjct: 246 QTAREVPTWVLTGADAPEEAEQVLVDAGCVVLRAPTSAEGRVDVTAAMRLCASQGIVSIL 305

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           VEGGA +A S + SRL D +  + + I++G  G P
Sbjct: 306 VEGGAELAGSLLASRLPDELHAFVAPILLGPRGRP 340


>gi|312139593|ref|YP_004006929.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase ribg [Rhodococcus equi 103S]
 gi|311888932|emb|CBH48245.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase RibG [Rhodococcus equi 103S]
          Length = 336

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 118/329 (35%), Positives = 162/329 (49%), Gaps = 40/329 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
           ++S DA  M  A+  S    G TS NP V  +I+   G V+G G T   G PHAEV AL 
Sbjct: 1   MTSLDA-AMRLAIDASEAARGSTSPNPPVGAVILDASGAVVGVGATRPPGGPHAEVVALA 59

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG-----RGL 116
            AGE ARG TA VTLEPC+H GR+ PC++ +I+ GI  V   V DP+   +G     R  
Sbjct: 60  AAGERARGGTAVVTLEPCNHQGRTGPCSRALIDAGIAAVHYSVADPNPAAAGGADTLRAA 119

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
           +     G++ D          L A+L RQ   R H+T K A + D     A   S  ITG
Sbjct: 120 RIEVTGGLLADDAERGP----LRAWLHRQRTGRPHVTWKFAATLDGRSAAADGTSQWITG 175

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDS 234
             ++ +VH  RA+ DAI+VG GTVLADDP LT RL    L  H P+R+++        + 
Sbjct: 176 PEARARVHADRARLDAIVVGTGTVLADDPWLTARLPDGSLAPHQPLRVVVG-------NR 228

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
            +  TA +         DD    L  R  ++  I     D               +LVEG
Sbjct: 229 PVPSTARVL--------DDAAPTLVLRTHDVGEILSALADQDD------------VLVEG 268

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           G  +A +F+ + +VD +  Y + +V+G G
Sbjct: 269 GPRLAGAFLAAGVVDRVQAYIAPVVLGAG 297


>gi|33862648|ref|NP_894208.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. MIT 9313]
 gi|33634564|emb|CAE20550.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. MIT 9313]
          Length = 368

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 110/326 (33%), Positives = 171/326 (52%), Gaps = 9/326 (2%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +M  AL+ +    G TS NP V  +++ K G ++G G  A  G PHAEV AL +AG++A 
Sbjct: 14  WMRRALQLAALADGRTSPNPLVGAVVLDKAGKLVGEGFHACAGEPHAEVGALAQAGKQAS 73

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           G T  VTLEPC H GR+PPC + +I  G+RRVVV + DPD RV+G G+  L   G+ ++ 
Sbjct: 74  GGTLLVTLEPCCHQGRTPPCTEAVIAAGLRRVVVAMQDPDPRVAGAGITRLRDAGLEVIT 133

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++E E      A++ R    R    LK A+S D    +    S  I+G  ++  VH LR
Sbjct: 134 AVLELEAAHQNRAFVHRVSTGRPWGILKWAMSLDGRTALPNGASQWISGGEARRWVHRLR 193

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            Q DA++VG GTV ADDP LT R  G  +  P R++L     L   +++  TA +A  ++
Sbjct: 194 GQCDAVIVGGGTVRADDPLLTSR--GHSDPEPKRVVLSRSLDLPQQAQLWNTA-VAQTLV 250

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
               +     LA   +   ++     +  +LL  L  +    +L E G  +A + +    
Sbjct: 251 AHGLEPGHEQLAHLPEGPELLALPVSEPLELLQALAQQDCNRVLWECGPGLAAAALQQGC 310

Query: 308 VDSIILYRSQIVIGEGGIP--SPLEE 331
           V  + +  +  ++  GG+P  +PL++
Sbjct: 311 VQELAVVVAPKLL--GGLPARTPLDD 334


>gi|258651000|ref|YP_003200156.1| riboflavin biosynthesis protein RibD [Nakamurella multipartita DSM
           44233]
 gi|258554225|gb|ACV77167.1| riboflavin biosynthesis protein RibD [Nakamurella multipartita DSM
           44233]
          Length = 366

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 120/348 (34%), Positives = 169/348 (48%), Gaps = 39/348 (11%)

Query: 28  NPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86
           NP V C L+   G  +G G     G PHAEV AL  AG  ARG TA V+LEPC+H GR+ 
Sbjct: 31  NPVVGCVLLAPGGWTVGEGYHRRPGGPHAEVAALTAAGPLARGGTAVVSLEPCNHTGRTG 90

Query: 87  PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGK------IFLHA 140
           PC+Q +I  G+ RV+V V DP    +G G+  L Q G+ V  +    G+         HA
Sbjct: 91  PCSQALIAAGVSRVIVAVRDPWPPAAG-GVDHLRQAGVQVVDLPSLAGQDPAAAAAVEHA 149

Query: 141 ------YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
                 +L      R  +T K+ ++ D  +  A   S  IT   S+  VH LRA+ D I+
Sbjct: 150 QDVNRVWLAAMRHGRPFVTWKVGMTIDGRVAAADATSRWITSPQSRADVHALRARVDTIM 209

Query: 195 VGIGTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252
           VG+GTVL DDP LT R +  +     P+R+++D   +    ++++  A  AP  + T   
Sbjct: 210 VGVGTVLDDDPALTVRDDQGEPVGRQPLRVVIDSSGRTPAQARVLDDA--APTWLATAES 267

Query: 253 DPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311
               A             D R DL  +L  L  RG   +L+EGG  +A SF+++ LVD +
Sbjct: 268 AGTGA-------------DGRVDLAAVLAELWRRGRRHVLLEGGPHLAASFLDAGLVDEV 314

Query: 312 ILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEY 354
           + Y +  ++G G  PS L  G +           V    FG DV L Y
Sbjct: 315 VAYVAPTLLGAG--PSALSGGAVGTLSDAHAAELVDLTRFGPDVRLRY 360


>gi|91788744|ref|YP_549696.1| 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidine
           deaminase [Polaromonas sp. JS666]
 gi|91697969|gb|ABE44798.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Polaromonas sp.
           JS666]
          Length = 373

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 111/339 (32%), Positives = 168/339 (49%), Gaps = 20/339 (5%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           F+  AL  +R  VG +  NP V C+I    D  V+G G T   G  HAE+ AL +A    
Sbjct: 7   FIDQALELARHAVGRSEPNPRVGCVIASADDQRVLGTGDTQAVGGAHAEIMALRDAAARR 66

Query: 68  R---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
               GATAYVTLEPCSH+GR+ PC   +I  GI++VV  + DP+  VSG+G + +   GI
Sbjct: 67  HVVAGATAYVTLEPCSHHGRTGPCCDALIAAGIKKVVASIADPNPLVSGQGFERMRAAGI 126

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +V     +E +     + +R + K   + +KIA S D    +    S  IT   ++   
Sbjct: 127 EVVVGPGAAESRELNIGFFSRMIRKTPWVRMKIAASLDGKTALDNGASQWITSEAARTDG 186

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  RA++ AIL GIGT+L D+P L  R +      P  +++D   +L L++ +       
Sbjct: 187 HAWRARASAILTGIGTILEDNPRLDVR-SVATPRQPHLVVVDSRLQLPLNANLFTGNRTI 245

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR--------DLKKLLTILVGRGVTSLLVEGG 295
            V     +D    AL   ++ + +IY   R        DL  +L  L  R V  + VE G
Sbjct: 246 YVYAAVPDDAKKTAL--EERGVTVIYLPGRQTGAPDKVDLTAMLRDLAQREVNEVHVEAG 303

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG-GIPS--PLEE 331
             +  S +   LVD  ++Y +  ++G G G+ S  PL++
Sbjct: 304 HKLNGSLLREELVDEFLVYLAPKLLGSGNGMASFGPLQQ 342


>gi|254556365|ref|YP_003062782.1| Pyrimidine reductase, riboflavin biosynthesis [Lactobacillus
           plantarum JDM1]
 gi|254045292|gb|ACT62085.1| Pyrimidine reductase, riboflavin biosynthesis [Lactobacillus
           plantarum JDM1]
          Length = 355

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 170/320 (53%), Gaps = 5/320 (1%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGEEAR 68
           FM  A+  ++     T  NP V  ++VKDG V+ +G   Y G  HAEV  L +   E+AR
Sbjct: 5   FMQMAIDQAKLAGVATYQNPQVGAVLVKDGHVLAQGYHHYFGGDHAEVDVLRQVTPEQAR 64

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GAT +VTLEPCSHYG++PPC+  I+  GIR+VV+   DP   V G+G Q+L   G+ +V 
Sbjct: 65  GATLFVTLEPCSHYGKTPPCSARIVAAGIRQVVIGQLDPHPIVGGKGRQYLLNHGVDVVT 124

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
             +  + +     Y    V++R  ITLK A++ D  I         ++   S      LR
Sbjct: 125 GCLTDKVRALNPHYNHFYVQQRPWITLKTAITLDGKINTETPTRTLVSNHASYIDSQCLR 184

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           +Q  AIL+G  T+  DDP+LT RL  + +  P+R+++     ++L+ ++++    AP  +
Sbjct: 185 SQFQAILIGERTLTIDDPQLTVRLTAMVQ-PPVRLVVLNTSTVALNHRLVQDG-QAPTWL 242

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
           +               N++++  +      +  + V +G  SLLVEGGA +   F+ + L
Sbjct: 243 LCRQAAASDDQLRNSPNVHVLIGNWTP-AAISQLCVEQGWQSLLVEGGAHLQAEFVAAEL 301

Query: 308 VDSIILYRSQIVIGEGGIPS 327
           +D  + Y + ++IG  G+P+
Sbjct: 302 IDEWVSYIAPMMIGGTGLPA 321


>gi|116073254|ref|ZP_01470516.1| Riboflavin biosynthesis protein RibD [Synechococcus sp. RS9916]
 gi|116068559|gb|EAU74311.1| Riboflavin biosynthesis protein RibD [Synechococcus sp. RS9916]
          Length = 386

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 119/365 (32%), Positives = 182/365 (49%), Gaps = 19/365 (5%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +M  AL+ +    G TS NP V  +++   G ++G G  A  G PHAEV AL +AG+ AR
Sbjct: 11  WMRRALQLAALADGHTSPNPLVGAVVLDAAGQLVGEGFHARAGEPHAEVGALAQAGDAAR 70

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           G T  VTLEPC H+GR+PPCA  +I  GI+RVVV + DPD RV+G GLQ L   G+ ++ 
Sbjct: 71  GGTIVVTLEPCCHHGRTPPCADAVIAAGIQRVVVALTDPDPRVAGGGLQRLRDAGLEVIS 130

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++E+E      A++ R    R    LK A+  D    ++   S  I+G  ++  VH LR
Sbjct: 131 GVLEAEAAYQNRAFVHRVQTGRPWGVLKWAMGLDGRTALSNGASQWISGPPARAWVHQLR 190

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI- 246
           A  DA++VG GTV ADDP LT R  G     P+R++L     L   +++     +AP + 
Sbjct: 191 AGCDAVIVGGGTVRADDPLLTSR--GRCASEPLRVVLSRSLDLPQSAQLWDQT-VAPTLV 247

Query: 247 ---------IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                       E    V   A +   + +   D  + + L   L  RG   +L E G +
Sbjct: 248 AHGPVAVAAAADEAPASVRLAALQGHGVAVQQLDRCEPEALFPELASRGCNRVLWECGPS 307

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           +A + ++   V  + +  +  V+G     +PL     +  F  + +    S    + +G+
Sbjct: 308 LAAAALHQGCVQELAVVIAPKVMGGELARTPLG----DLGFTAMDQVVPVSLAAAQNLGR 363

Query: 358 NLCLQ 362
           +L LQ
Sbjct: 364 DLLLQ 368


>gi|332295838|ref|YP_004437761.1| riboflavin biosynthesis protein RibD [Thermodesulfobium narugense
           DSM 14796]
 gi|332178941|gb|AEE14630.1| riboflavin biosynthesis protein RibD [Thermodesulfobium narugense
           DSM 14796]
          Length = 372

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/333 (31%), Positives = 165/333 (49%), Gaps = 24/333 (7%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  AL  +      TS NP V C++VKD  +I +G     G PHAE  AL+    +  G
Sbjct: 16  FMKKALDLALNGKYYTSPNPMVGCIVVKDKKIISQGYHRAYGEPHAEANALKPKYIDFSG 75

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           A  YVTLEPC HYG++P C   II  GI+RV +   DP+ +++G+ ++ L   GI +   
Sbjct: 76  ADLYVTLEPCLHYGKTPSCTSKIISSGIKRVFIATLDPNPKMNGKSVEILKYAGIEVYTG 135

Query: 129 MMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
           ++E E + F++ +  + +EK    +  K A++ D         S  I+   S+  VH LR
Sbjct: 136 ILEKEAR-FINRHFFKAMEKSMPWLIYKCAMTLDGKTADHNFKSKYISSVKSRKYVHELR 194

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           A+ DAI+VG  T + DDP L  RL G+Q+    R+I+DP   L  D  +  T      I+
Sbjct: 195 AECDAIIVGYRTAIFDDPLLNIRLKGVQKKVN-RVIIDPKAALPKDLMVFNTPNEGHTIL 253

Query: 248 VTEN-----------DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
           V +               V  L   +KN    Y D      L+  L  + +  +L+EGG 
Sbjct: 254 VIQKGFRNKVTDQIESQGVEVLEVEEKN---FYVD------LMKELFKKNLIKILLEGGG 304

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
           ++A   + +RL+D +  + +  ++G    P+P 
Sbjct: 305 SLACHMLKNRLIDELNFFIAPKILGGKNSPTPF 337


>gi|255535790|ref|YP_003096161.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Flavobacteriaceae bacterium 3519-10]
 gi|255341986|gb|ACU08099.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Flavobacteriaceae bacterium 3519-10]
          Length = 342

 Score =  159 bits (403), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 102/326 (31%), Positives = 166/326 (50%), Gaps = 15/326 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M   +  ++  +G T  NP V  +IV DG +IG G     G PHAE+ A+    + 
Sbjct: 3   DELYMKRCIELAKKALGQTYPNPMVGSVIVHDGRIIGEGFHQKAGSPHAEINAINSVKDP 62

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +  R +T YV+LEPC+H+G++PPCA  + E G ++VV+ + D   +V+G+G Q L   GI
Sbjct: 63  SLLRDSTIYVSLEPCAHFGKTPPCADKLAEIGFKKVVIGILDSHDKVNGKGKQILENAGI 122

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +V  ++ +E       +   Q +KR  I LK A S D  I     G   I   ++K  V
Sbjct: 123 EVVTDVLRNECFDLNKRFFAFQEKKRPFILLKWAESADRFID-KDFGPTQIGNALTKQYV 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H LR++  AILVG  T L D+P LT R   +   +P+RI++D   K+     I  +   A
Sbjct: 182 HTLRSEEHAILVGTNTALTDNPSLTVR--EISGRNPVRILVDFDLKVPTSFNIYNSE--A 237

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDL-KKLLTILVGRGVTSLLVEGGAAVAHSF 302
           P ++     + V      + +I+ I     +    L++ L  + + S++VEGG      F
Sbjct: 238 PTLVFNGVKNSV------EGHISFIKISKDNFPATLMSQLYEKQIQSVIVEGGRFTLQQF 291

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSP 328
           I++ L D  ++ R++ +    G  +P
Sbjct: 292 IDTDLWDETVIIRNENINLTNGTKAP 317


>gi|269956518|ref|YP_003326307.1| riboflavin biosynthesis protein RibD [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269305199|gb|ACZ30749.1| riboflavin biosynthesis protein RibD [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 350

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 109/303 (35%), Positives = 152/303 (50%), Gaps = 33/303 (10%)

Query: 28  NPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYG 83
           NP V C L+  DG VIG G     G PHAEV AL +A   G + RGATA VTLEPC+H G
Sbjct: 32  NPRVGCVLLAPDGTVIGEGWHRGAGTPHAEVAALHDAHTRGCDPRGATAVVTLEPCNHTG 91

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL-HAYL 142
           R+ PCAQ +++ GI  VV  +DDP  R SG G   L   GI V   + +   + L H + 
Sbjct: 92  RTGPCAQALVDAGITDVVHAIDDPGAR-SGGGADHLRAHGIRVTSEVRAAAALELVHHWH 150

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
                 R  +TLK A + D  +  +   S  ITG  ++   H +RAQ DAI V  GT LA
Sbjct: 151 HAVTAGRPWVTLKTATTLDGRVAASDGTSKWITGPEAREHAHSVRAQVDAIAVTTGTALA 210

Query: 203 DDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
           DDP LT R    GL  H P+R+++  H  L   +++                        
Sbjct: 211 DDPALTARTPDGGLAAHQPLRVVVG-HRDLPPGARL------------------------ 245

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
           R  +   ++    D+  +L  L  R +  LLVEGG A+A + + +  VD +  Y + +++
Sbjct: 246 RDDDAETLHLRTHDVHHVLAALHDREIRHLLVEGGPALATALLAADAVDELHAYIAPVIL 305

Query: 321 GEG 323
           G+G
Sbjct: 306 GDG 308


>gi|150010266|ref|YP_001305009.1| riboflavin biosynthesis protein ribD [Parabacteroides distasonis
           ATCC 8503]
 gi|149938690|gb|ABR45387.1| riboflavin biosynthesis protein ribD [Parabacteroides distasonis
           ATCC 8503]
          Length = 359

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 107/312 (34%), Positives = 168/312 (53%), Gaps = 19/312 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + ++M+  +  ++   G  S NP V  ++V  G +IG G     G  HAEV A+    +E
Sbjct: 5   EEKYMARCIELAKGGRGNVSPNPMVGAVVVHKGRIIGEGFHRKCGEAHAEVNAIASVKDE 64

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +  + +T YV+LEPCSHYG++PPCA+ II  GI RVVV   DP   VSGRG++ L + G+
Sbjct: 65  SLLKDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGCLDPFPEVSGRGVRMLREAGV 124

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG-SVPITGFISKNQ 182
            +V  +ME E +    A++T Q + R +I LK A S+D  I       S P+T   S   
Sbjct: 125 EVVTGVMEEEARALNKAFMTLQTKGRPYIILKWAQSEDGFIDRLRMDVSEPVTVLSSPET 184

Query: 183 ---VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
              VH LR++  AI+VG  T L D+P L  R      +SP+R++LD    +    +++  
Sbjct: 185 SRLVHKLRSEVAAIMVGTRTALLDNPSLNVR--HWSGNSPVRVVLDRRLVIPDSYRLLNG 242

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAA 297
           +  +  +I TE +         ++N+  I  D     ++++L  L  R + SLLVEGG  
Sbjct: 243 S--SRTLIFTEKE------VENRENVEYIRIDFEGPVIRQVLDHLAVRKLDSLLVEGGTQ 294

Query: 298 VAHSFINSRLVD 309
           + +SF+ + + D
Sbjct: 295 LINSFVEADVWD 306


>gi|255012465|ref|ZP_05284591.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 2_1_7]
          Length = 359

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 180/339 (53%), Gaps = 19/339 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + ++M+  +  ++   G  S NP V  ++V  G +IG G     G  HAEV A+    +E
Sbjct: 5   EEKYMARCIELAKGGRGNVSPNPMVGAVVVHKGRIIGEGFHRKCGEAHAEVNAIASVKDE 64

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +  + +T YV+LEPCSHYG++PPCA+ II  GI RVVV   DP   VSGRG++ L + G+
Sbjct: 65  SLLKDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGCLDPFPEVSGRGVRMLREAGV 124

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV-PITGFISKNQ 182
            +V  +ME E +    A++T Q + R +I LK A S+D  I       + P+T   S   
Sbjct: 125 EVVTGVMEEEARALNKAFMTLQTKGRPYIILKWAQSEDGFIDRLRMDVLEPVTVLSSPET 184

Query: 183 ---VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
              VH LR++  AI+VG  T L D+P L  R      +SP+R++LD    +    +++  
Sbjct: 185 SRLVHKLRSEVAAIMVGTRTALLDNPSLNVR--HWSGNSPVRVVLDRRLVIPDSYRLLDG 242

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAA 297
           +L    +I TE +         ++++  I  D     ++++L  L  R + SLLVEGG  
Sbjct: 243 SLRT--LIFTEKE------VENREDVEYIRIDFEGPVIRQVLDHLAVRKLDSLLVEGGTQ 294

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
           + +SF+ + + D   +  + + + +G     LE+G + +
Sbjct: 295 LINSFVEADVWDEARVETAPVRLYQGVHAPMLEKGVVRR 333


>gi|68536087|ref|YP_250792.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Corynebacterium jeikeium K411]
 gi|68263686|emb|CAI37174.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Corynebacterium jeikeium K411]
          Length = 354

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 117/352 (33%), Positives = 167/352 (47%), Gaps = 43/352 (12%)

Query: 20  WHVG-LTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLE 77
           W    L S NP V  +I    G V+GRG T   G  HAEV ALE+AGE+ARG  A VTLE
Sbjct: 14  WQAAQLASPNPPVGAVIEDPSGQVVGRGFTQAPGGAHAEVVALEQAGEKARGGRAIVTLE 73

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD---------- 127
           PC+H GR+ PCA+ +I  GIRRV     DP+    G G   L   G+ V           
Sbjct: 74  PCNHTGRTGPCAEALIRAGIRRVDFLFADPNPIAEG-GAATLRAAGVEVHGPYLPNPTTS 132

Query: 128 --RMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
               + +  +++ +  +L  + ++R H+ LK+A + D  +      S  ITG  ++  VH
Sbjct: 133 PAAKLPAWSQMYSVEPWLISEAQQRPHVCLKMASTLDGRVAAVDGTSQWITGEPARVAVH 192

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             R + DAILVG GT++AD+P LT R                      D +     L   
Sbjct: 193 EDRTRRDAILVGTGTIVADNPRLTAR--------------------DADGRPFPEELQPL 232

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
            +I+  +D P  A  F       ++   RD+ ++L  L  R V +LLVEGGA VA +F+ 
Sbjct: 233 RVIMGTSDIPAGAAVFATPG-RALHLQTRDVHEVLAELWKRDVRTLLVEGGAQVAAAFVK 291

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR------DYFGSDV 350
           + +VD +  Y +  V+G G       E  L +    +RR        FG D+
Sbjct: 292 ADVVDEVQYYAAPAVLGAGVASLSDSENNLGQTIGDIRRFVPRELQVFGQDL 343


>gi|218131999|ref|ZP_03460803.1| hypothetical protein BACEGG_03622 [Bacteroides eggerthii DSM 20697]
 gi|217985875|gb|EEC52215.1| hypothetical protein BACEGG_03622 [Bacteroides eggerthii DSM 20697]
          Length = 347

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 118/358 (32%), Positives = 178/358 (49%), Gaps = 48/358 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + ++M   ++ ++  +  T+ NP V  +IV DG +IG G     G  HAEV A+    E 
Sbjct: 3   EEKYMRRCIQLAQNGLCNTAPNPMVGAVIVCDGKIIGEGYHIRCGEAHAEVNAIRSVKEP 62

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG- 123
           +  + +T YV+LEPC+HYG++PPCA  IIE  I R+V+   DP  +V+GRG+Q L   G 
Sbjct: 63  SLLKRSTIYVSLEPCAHYGKTPPCADLIIEKQIPRIVIGCQDPFAKVAGRGIQKLKDAGR 122

Query: 124 -IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI------GMAGCGSVPITG 176
            +IV  ++E + K  +  ++T     R +ITLK A S D  I      G     S P+T 
Sbjct: 123 EVIVG-VLEEDCKNLIRRFVTFHSLHRPYITLKWAESADKHIDKCRKDGKPVILSTPLTS 181

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
            +    VH  RA+   I+VG  T   D+P LT R    Q  SP+RI++D   +LS    +
Sbjct: 182 ML----VHKRRAEHSTIMVGTHTAELDNPSLTVR--NWQGQSPVRIVIDRQQRLSPSLHL 235

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKK------NINIIYCDCRD--LKKLLTILVGRGVT 288
                          DD +  L F  +      N   I  D +   L +++  L  +G+ 
Sbjct: 236 F--------------DDSIRTLVFTGQPHAAFPNTEYIVIDFQQNILPQIMQHLYAQGLQ 281

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP--------LEEGYLEKNF 338
           SLLVEGG+ +  SFIN+ L D I +  S + +   G+ +P        + E Y  +NF
Sbjct: 282 SLLVEGGSYLLQSFINAELWDEIFVEESPLKLF-SGVKAPEIGNKIPYVNEQYFGRNF 338


>gi|268317615|ref|YP_003291334.1| riboflavin biosynthesis protein RibD [Rhodothermus marinus DSM
           4252]
 gi|262335149|gb|ACY48946.1| riboflavin biosynthesis protein RibD [Rhodothermus marinus DSM
           4252]
          Length = 368

 Score =  159 bits (402), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 121/324 (37%), Positives = 165/324 (50%), Gaps = 30/324 (9%)

Query: 23  GLTSTNPSV-ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA----GEEA-RGATAYVTL 76
           G  S NP V A L+  DG V+  G     G PHAE  A+EEA    G EA R AT YV L
Sbjct: 13  GRVSPNPMVGAVLVDTDGQVLAEGWHDRYGGPHAERVAIEEALRRHGPEALRRATLYVNL 72

Query: 77  EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGK 135
           EPC+HYG++PPCA FII  GI RVVV + DP  +V+GRG+  L   G+ V+  ++E+  +
Sbjct: 73  EPCAHYGKTPPCADFIITHGIPRVVVGMVDPFPQVAGRGIARLRAHGVQVEVGVLEAACR 132

Query: 136 IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195
            F  A++      R  +TLK+A + D  +      S  I+G  ++  VH  RA  D +LV
Sbjct: 133 RFNEAFVHHVETGRPLVTLKMAQTLDGFVATRTGQSRWISGERARKLVHCWRAVLDGVLV 192

Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILD------PHFKLSLDSKIIKTALLAPVIIVT 249
           G GT  ADDP LT R   ++   P+RI+LD      P  +L  D +  +T     + IV 
Sbjct: 193 GSGTAAADDPALTVRH--VEGRQPVRIVLDRTGGLPPTLRLFTDEQAART-----LAIVG 245

Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILV------GRGVTSLLVEGGAAVA 299
               P  A   ++    +     R    DL+ LL  L       GR + SLLVE G  +A
Sbjct: 246 PGARPAYAALLQQAGGRVWTLPLRDGHLDLEALLERLGREGGPDGRPLQSLLVEAGPRLA 305

Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323
            +     LVD   L+ +  + GEG
Sbjct: 306 TALFRQGLVDRFFLFIAPRLFGEG 329


>gi|329964682|ref|ZP_08301736.1| riboflavin biosynthesis protein RibD [Bacteroides fluxus YIT 12057]
 gi|328525082|gb|EGF52134.1| riboflavin biosynthesis protein RibD [Bacteroides fluxus YIT 12057]
          Length = 349

 Score =  159 bits (402), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 114/330 (34%), Positives = 174/330 (52%), Gaps = 20/330 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + ++M   ++ ++  +   + NP V  +IV DG +IG G     G  HAEV A+    E 
Sbjct: 4   EEKYMRRCIQLAQNGLCNAAPNPMVGAVIVCDGKIIGEGYHIRCGEAHAEVNAIRSVKEP 63

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG- 123
           A  + +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP  +V+GRG+Q L   G 
Sbjct: 64  ALLKKSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCRDPFSKVAGRGIQKLKDAGR 123

Query: 124 -IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISK 180
            +IV  ++E E K  +  ++T    +R +ITLK A S D  I +      P+  +  ++ 
Sbjct: 124 EVIVG-VLEEECKSLIRRFITFHTLQRPYITLKWAESADKYIDLNRTNGSPVVLSSPLTA 182

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             VH  RA+  AI+VG  T   D+P L  R       SP+RI+LD   K SL + +    
Sbjct: 183 MLVHKKRAEHKAIMVGTHTAWLDNPSLNIR--HWSGKSPVRIVLDK--KQSLPASLHLFD 238

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDC-RD-LKKLLTILVGRGVTSLLVEGGAAV 298
              P ++ TE     L       N+  +  D  RD L +++  L  RG+ SLLVEGG+ +
Sbjct: 239 GSVPTLVFTEMPHKPLP------NVEYLPIDYQRDILPQIMETLYKRGIQSLLVEGGSIL 292

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
             SFI++ + D I +  +  ++   G+ SP
Sbjct: 293 LQSFIDAGMWDEIFVEEAPNLL-HSGVKSP 321


>gi|296395033|ref|YP_003659917.1| riboflavin biosynthesis protein RibD [Segniliparus rotundus DSM
           44985]
 gi|296182180|gb|ADG99086.1| riboflavin biosynthesis protein RibD [Segniliparus rotundus DSM
           44985]
          Length = 343

 Score =  159 bits (402), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 121/330 (36%), Positives = 172/330 (52%), Gaps = 35/330 (10%)

Query: 1   MPVSSF--DARFMSAALRFSRWHVGLTSTNPSV-ACLIVKDGIVIGRGVTAYGGCPHAEV 57
           MPV     D  FM  A+  SR   G TS NP V A L+  DG ++GRG T   G  HAEV
Sbjct: 1   MPVRDLPVDEAFMREAIAVSRLARGRTSPNPPVGAVLVSPDGQIVGRGATRPPGQEHAEV 60

Query: 58  QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            AL +AGE ARGATAYVTLEPC+H GR+ PCA+ +++ G+  VV  V DP+ R SG G +
Sbjct: 61  VALAQAGERARGATAYVTLEPCNHVGRTGPCARALVDAGVAAVVCAVPDPNQR-SGGGAK 119

Query: 118 WLSQKGIIVD-RMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
            L   G+ V   ++  E +   L  +L  Q   R H+T K A + D         S  IT
Sbjct: 120 TLEAAGVGVRVGVLAHEARTGPLREWLHAQRTGRPHVTWKFAATLDGRSAARDGSSQWIT 179

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLD 233
           G   +  VH +RA+ DAI+VG GT LADDP LT RL    L    P R+++    +L   
Sbjct: 180 GPQIRKSVHAVRAELDAIIVGTGTALADDPWLTARLPDGSLAPRQPTRVVVG-MTELPRG 238

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
           ++++  +  AP ++  +  DP  ALA     +++                       L+E
Sbjct: 239 ARVLDGS--APTVLA-KTRDPAEALAMLGDAVHV-----------------------LLE 272

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GG  +A +F+ + LVD +  + + +++G G
Sbjct: 273 GGPTLAAAFLRAGLVDLVQAHIAPVLLGAG 302


>gi|313885967|ref|ZP_07819705.1| riboflavin biosynthesis protein RibD [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924497|gb|EFR35268.1| riboflavin biosynthesis protein RibD [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 343

 Score =  159 bits (402), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 119/349 (34%), Positives = 175/349 (50%), Gaps = 31/349 (8%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D  +M   L+ +    G TS NP V  +IV    +IG G   Y G PHAEV A   
Sbjct: 8   TSPSDQIYMQRCLQLAALAQGRTSPNPMVGSVIVYKDKIIGEGYHHYAGAPHAEVMAWRS 67

Query: 63  AGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
             EE R     AT YV+LEPC+HYG++PPCA+ +      RVV+ + DP  +V GRG+  
Sbjct: 68  VPEELRSVIGKATWYVSLEPCAHYGKTPPCAELLAGLRPARVVIAMLDPFAKVDGRGVAR 127

Query: 119 LSQKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGM----AGCGSVP 173
           L + GI V      +  I L+  +L  Q   R ++TLK A S D+ I      A      
Sbjct: 128 LREAGIEVSIGCLEQAAIALNRHFLVAQTLGRPYVTLKWAESADHYIDRLRHDASEAPYT 187

Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIIL------DP 226
            +  + +  VH LR+  DAILVG  T   DDP LT R  +G Q   P+R++        P
Sbjct: 188 FSSPLRQRSVHRLRSLHDAILVGHHTAELDDPLLTNRSGSGGQ---PIRLLWCHSRLPRP 244

Query: 227 HFKLSLDSKIIKTALLAPVII--VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
             ++  D+      LL P ++  VT+   P         +++ +     +++ LLT+L  
Sbjct: 245 ELRMLQDASAPTILLLPPALLEQVTDGQYPT--------HVSCL-ATTGEVRDLLTLLHS 295

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           +G+ SLLVEGGA V   F+++ L D I +  + + + E G+P+P  E +
Sbjct: 296 QGIESLLVEGGAQVLQRFLDAGLYDEINVEHAPVELRE-GVPAPHLEQW 343


>gi|308180337|ref|YP_003924465.1| Pyrimidine reductase, riboflavin biosynthesis [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|308045828|gb|ADN98371.1| Pyrimidine reductase, riboflavin biosynthesis [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 355

 Score =  159 bits (402), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 169/320 (52%), Gaps = 5/320 (1%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGEEAR 68
           FM  A+  ++     T  NP V  ++VKDG V+ +G   Y G  HAEV  L +   E+AR
Sbjct: 5   FMQMAIDQAKLAGVATYQNPQVGAVLVKDGHVLAQGYHHYFGGDHAEVDVLRQVTPEQAR 64

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GAT +VTLEPCSHYG++PPC+  I+  GIR+VV+   DP   V G+G Q+L   G+ +V 
Sbjct: 65  GATLFVTLEPCSHYGKTPPCSARIVAAGIRQVVIGQLDPHPIVGGKGRQYLLNHGVDVVT 124

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
             +  + +     Y    V++R  ITLK A++ D  I         ++   S      LR
Sbjct: 125 GCLTDKVRALNPHYNHFYVQQRPWITLKTAITLDGKINTETPTRTLVSNHASYIDSQCLR 184

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           +Q  AIL+G  T+  DDP+LT RL  +    P+R+++     ++L+ ++++    AP  +
Sbjct: 185 SQFQAILIGERTLTIDDPQLTVRLTAMVR-PPVRLVVLNTSTVALNHRLVQDG-QAPTWL 242

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
           +               N++++  +      +  + V +G  SLLVEGGA +   F+ + L
Sbjct: 243 LCRQAAASDDQLRNSPNVHVLIGNWTP-AAISQLCVEQGWQSLLVEGGAHLQAEFVAAEL 301

Query: 308 VDSIILYRSQIVIGEGGIPS 327
           +D  + Y + ++IG  G+P+
Sbjct: 302 IDEWVSYIAPMMIGGTGLPA 321


>gi|161504399|ref|YP_001571511.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160865746|gb|ABX22369.1| hypothetical protein SARI_02510 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 367

 Score =  159 bits (402), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 128/370 (34%), Positives = 188/370 (50%), Gaps = 28/370 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP V C+IV +G ++G G     G PHAEV AL  AG +
Sbjct: 3   DEFYMARALKLAQRGRFTTHPNPDVGCVIVNNGEIVGEGYHQRAGEPHAEVHALRMAGAK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+G GL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGCGLYRLQQAGIAV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R   L         QE+   P+RI++D   +++   
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAH 242

Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +I++      +    E+     D V  ++    N ++      DL  L+  L  + + S+
Sbjct: 243 RIVQQPGETWIARTQEDSRAWPDSVRTISVPAHNGHL------DLVVLMMQLGRQQINSI 296

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
            VE G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      +
Sbjct: 297 WVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRH 355

Query: 346 FGSDVCLEYI 355
            G DVCL  +
Sbjct: 356 VGPDVCLHMV 365


>gi|260662243|ref|ZP_05863139.1| riboflavin biosynthesis protein RibD [Lactobacillus fermentum
           28-3-CHN]
 gi|260553626|gb|EEX26518.1| riboflavin biosynthesis protein RibD [Lactobacillus fermentum
           28-3-CHN]
          Length = 352

 Score =  159 bits (402), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 113/330 (34%), Positives = 159/330 (48%), Gaps = 19/330 (5%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-A 63
           S D +FM  AL  +      T  NP V  +IVKDG ++  G     G  HAE  A+ + +
Sbjct: 2   SSDEQFMQLALAEAAKGGSATWKNPQVGAVIVKDGQLLATGYHHQYGQAHAERDAISKLS 61

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            E+  GAT YVTLEPC HYG+ PPC+Q +I+    RVVV   DP   V G+G+  L   G
Sbjct: 62  NEQLAGATIYVTLEPCFHYGKQPPCSQLLIDSHFARVVVATIDPHQVVGGKGIAQLKAAG 121

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V+  +++ + +     Y     ++   IT K A+S D  +  A   +  IT   ++  
Sbjct: 122 IDVEVGLLKDQAEALNRHYFYFYRQQWPWITAKQALSLDGKVAAAPGQATAITNQAARRL 181

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTAL 241
           VH  RA   AI+VG GTVLADDP L C    L    P+R+ILD   + L    + + T  
Sbjct: 182 VHQERADYHAIVVGAGTVLADDPRLLCETPQL--FPPVRVILDRAGRLLDYQDRFVFTDA 239

Query: 242 LAPVIIVTEN------DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
            AP  +VT N      D P         ++ +      D  +LL       + SL VEGG
Sbjct: 240 SAPTWLVTTNRAATKVDWPA--------HVTVKLLQNGDWPELLDYFKEAELQSLYVEGG 291

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
            AV      +  V+ +I Y    +IG+ G+
Sbjct: 292 PAVLTELFQAVPVNQLITYLDPQIIGDQGL 321


>gi|317508958|ref|ZP_07966591.1| riboflavin biosynthesis protein RibD [Segniliparus rugosus ATCC
           BAA-974]
 gi|316252723|gb|EFV12160.1| riboflavin biosynthesis protein RibD [Segniliparus rugosus ATCC
           BAA-974]
          Length = 363

 Score =  159 bits (401), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 109/299 (36%), Positives = 152/299 (50%), Gaps = 32/299 (10%)

Query: 29  PSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPC 88
           P  A L+   G ++GRGVT   G  HAEV A+ EAGE ARGATAYVTLEPC H GR+ PC
Sbjct: 46  PVGAVLVSPGGQIVGRGVTQPPGQAHAEVMAIAEAGERARGATAYVTLEPCDHVGRTGPC 105

Query: 89  AQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR--MMESEGKIFLHAYLTRQV 146
           ++ +I  GI  VV  V DP+ R SG G + L   G+ V    + +   K  L  +L  Q 
Sbjct: 106 SRALIAAGIAEVVYAVPDPNPRSSG-GARTLEAAGVRVRSGVLADEVRKGPLREWLHVQR 164

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             R H+T K A + D         S  ITG   +  VH  R + DAI+VG GT LADDP 
Sbjct: 165 TGRPHVTWKFAATLDGRAAAKDGTSQWITGPQIRESVHATRGELDAIIVGTGTALADDPW 224

Query: 207 LTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
           LT RL    L  H P R+++    +L   ++++  A  AP ++  +  DP  ALA     
Sbjct: 225 LTARLPDGSLAPHQPTRVVMG-TRELPEAARVLDDA--APTVLA-KTHDPAEALAMLGDK 280

Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           +++                       L+EGG  +A +F+ + LVD +  + +  ++G G
Sbjct: 281 VHV-----------------------LLEGGPKLAAAFLKAGLVDLVHAHLAPALLGAG 316


>gi|325953844|ref|YP_004237504.1| riboflavin biosynthesis protein RibD [Weeksella virosa DSM 16922]
 gi|323436462|gb|ADX66926.1| riboflavin biosynthesis protein RibD [Weeksella virosa DSM 16922]
          Length = 345

 Score =  159 bits (401), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 166/329 (50%), Gaps = 20/329 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAG 64
           D  +M+  L+ +   +G T  NP V  +IV +  +IG G T++ G PHAEV A+   E  
Sbjct: 7   DEFYMNRCLQLAANGLGNTYPNPFVGSVIVHNQNIIGEGFTSFYGGPHAEVNAIHSVEKK 66

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E    +T YVTLEPC+H+G++PPC+  IIE  I RVVV   DP   V+G G+  +   GI
Sbjct: 67  ELLPSSTLYVTLEPCAHFGKTPPCSDLIIEHKIPRVVVGCLDPFALVNGEGINRMRTHGI 126

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V   ++E E       + T   +KR ++ LK A + +            I+   SK  V
Sbjct: 127 EVSVGILEKECLELNRRFFTIHQKKRPYVILKWAQTANGYFAPKNHTQQWISNRFSKQLV 186

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  R Q  AILVG  T + D+P+L  RL  +Q  +P+R+++D  + LS  +         
Sbjct: 187 HWWRTQEQAILVGKNTAIVDNPQLNSRL--VQGRNPIRVLID--YDLSTPTTHYLFDQTL 242

Query: 244 PVIIVTE----NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           P II  +     ++ +  +  + K  N        L+++L IL  + + S+++EGG+   
Sbjct: 243 PTIIFNKVKGGKNELIEYIQLQSKENN--------LEEILRILYQKNIQSIIIEGGSRTL 294

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP 328
            +FI   L D   ++ S  V  E GI +P
Sbjct: 295 QTFIEQNLWDEARVFSSSTV-WEDGIFAP 322


>gi|304320114|ref|YP_003853757.1| diaminohydroxyphosphoriboxylaminopyrimidine deaminase
           +5-amino-6-(5-phosphoribosylamino)uracil reductase
           (RibD) [Parvularcula bermudensis HTCC2503]
 gi|303299017|gb|ADM08616.1| diaminohydroxyphosphoriboxylaminopyrimidine deaminase
           +5-amino-6-(5-phosphoribosylamino)uracil reductase
           (RibD) [Parvularcula bermudensis HTCC2503]
          Length = 366

 Score =  159 bits (401), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 109/319 (34%), Positives = 160/319 (50%), Gaps = 9/319 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A        G T+ NP V C++VK G ++G G     G  HAE+ AL+ AG EARGA
Sbjct: 9   MDRAAALGELGAGFTAPNPMVGCVLVKGGQIVGEGYHPRPGADHAEIAALKAAGAEARGA 68

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
            AYVTLEPC+HYG +PPC + +IE G+  VV  V DP+   SG G + L   GI V    
Sbjct: 69  VAYVTLEPCNHYGATPPCTKALIEAGVAEVVYAVADPNPLASG-GRETLQAAGIAVRAHP 127

Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
                    A+       R  +  K A + D  +   G  S  ITG  ++ + H LR +S
Sbjct: 128 TLAASRLTDAWRFSLTADRPWVAAKFAATLDGRVATRGGDSQWITGPAARARSHDLRQRS 187

Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
            AI+VG+GTVLAD+P L  R  G      +++I D   +    +  + +    PV+++T 
Sbjct: 188 GAIVVGVGTVLADNPALNPRPEGRAAAETLKVIFDSQARTPPHAACLSSP--GPVLLITA 245

Query: 251 NDDPVLAL-AFRKKNINIIYCDCRD----LKKLLTILVGR-GVTSLLVEGGAAVAHSFIN 304
            D P  A  A ++   +II     +    L+  L  L    G  S++VEGG  +  SF +
Sbjct: 246 EDAPGAAKSALKESGAHIISVQRENEGLCLRSALHCLRADFGCLSIMVEGGGRLLGSFAD 305

Query: 305 SRLVDSIILYRSQIVIGEG 323
           + L+D +  + +  ++G G
Sbjct: 306 AGLIDEVWAFLAPKILGGG 324


>gi|189485534|ref|YP_001956475.1| riboflavin biosynthesis protein RibD [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287493|dbj|BAG14014.1| riboflavin biosynthesis protein RibD [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 355

 Score =  159 bits (401), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 103/318 (32%), Positives = 172/318 (54%), Gaps = 13/318 (4%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           ++M  AL  ++   G   TNP V C+IVKD  ++GRG     G  HAEV A+ +AG+ A 
Sbjct: 5   KYMQLALDLAQKGKGRVYTNPLVGCVIVKDNKIVGRGWHQCFGGNHAEVNAIIDAGKNAE 64

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-D 127
           GA  YVTLEPC+ YG+  PC   II+ GI+RV   V  PD  VSG G + L +  I V +
Sbjct: 65  GADLYVTLEPCNSYGKRTPCTLTIIKAGIKRVYYAV--PDSNVSG-GREILERNNIKVHE 121

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            +++ + +I +  YL + ++ +  +++K A++ D  I      S  IT   S+N VH +R
Sbjct: 122 GLLKKQSRILIKDYL-KHLKNKPKVSIKAAMTLDGKIATYEYDSKWITSEKSRNFVHKMR 180

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           A+ DA+LVG+ T L D+P LT     L+  +P+R+++D   KL     +    +  P +I
Sbjct: 181 ARYDAVLVGMNTALKDNPILTTHSKNLK--NPIRVVIDSGLKLPKSHHLFDACV--PTVI 236

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR----GVTSLLVEGGAAVAHSFI 303
           V + +   +     ++ I +   +    KK  ++++ +     +  +L+EGG+ +  S +
Sbjct: 237 VYDLNITNIPKYLNREGIILSPVNIDAAKKDFSVIIKKLDSLSIKRILIEGGSEIIASAL 296

Query: 304 NSRLVDSIILYRSQIVIG 321
            S +VD I  + +  + G
Sbjct: 297 FSDVVDDIYFFIAPKITG 314


>gi|124023623|ref|YP_001017930.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. MIT 9303]
 gi|123963909|gb|ABM78665.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. MIT 9303]
          Length = 368

 Score =  159 bits (401), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 95/234 (40%), Positives = 133/234 (56%), Gaps = 4/234 (1%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +M  AL+ +    G TS NP V  +++ K G ++G G  A  G PHAEV AL +AGE+A 
Sbjct: 14  WMRRALQLAALADGRTSPNPLVGAVVLDKAGKLVGEGFHACAGEPHAEVGALAQAGEQAS 73

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           G T  VTLEPC H GR+PPC Q +I  G+RRVVV + DPD RV+G G+  L   G+ ++ 
Sbjct: 74  GGTLVVTLEPCCHQGRTPPCTQAVIAAGLRRVVVAMQDPDPRVAGAGITRLRDAGLEVIT 133

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++E E      A++ R    R    LK A+S D    +    S  I+G  +++ VH LR
Sbjct: 134 AVLEPEAAHQNRAFVHRVSTGRPWGILKWAMSLDGRTALPNGASQWISGGEARSWVHRLR 193

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            Q DA++VG GTV ADDP LT R  G  +  P R++L     L   +++   A+
Sbjct: 194 GQCDAVIVGGGTVRADDPLLTSR--GHSDPEPKRVVLSRSLDLPQQAQLWDIAV 245


>gi|224025262|ref|ZP_03643628.1| hypothetical protein BACCOPRO_01999 [Bacteroides coprophilus DSM
           18228]
 gi|224018498|gb|EEF76496.1| hypothetical protein BACCOPRO_01999 [Bacteroides coprophilus DSM
           18228]
          Length = 306

 Score =  159 bits (401), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 111/310 (35%), Positives = 164/310 (52%), Gaps = 25/310 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D +++   ++ +R  +   + NP V  ++V    +IG G  A  G  HAEV AL    +E
Sbjct: 4   DEKYIRRCIQLARNGLCNAAPNPMVGAVVVYRDRIIGEGYHARCGEGHAEVNALRSVRDE 63

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +  + AT YV+LEPCSHYG++PPCA  I+  GI RVVV   DP   V+GRG++ L + GI
Sbjct: 64  SLLKEATLYVSLEPCSHYGKTPPCADLIVSKGIPRVVVGCMDPFPLVAGRGIRKLEEAGI 123

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI------GMAGCGSVPITGF 177
            V   ++E E +  +  ++T  + KR +ITLK A S D  I      G     S P+T  
Sbjct: 124 DVTVGVLEEECRELIRRFVTLNIRKRPYITLKWAQSADGFIDRLRQEGSPAVLSTPLTSM 183

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
                VH +RA+  AILVG  T L D+P LT R       +P+R+++D    L  + K+ 
Sbjct: 184 Y----VHKMRAEYKAILVGRRTALLDNPSLTTR--NWYGPNPLRLVIDRKLTLPRELKLF 237

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGG 295
                AP ++ TE    V A   R+ N++    D     L +++ +L  R + SLLVEGG
Sbjct: 238 DGT--APTLVFTEE---VPAECLRQTNVDYQVLDFSQDILPQIMQVLYERKIQSLLVEGG 292

Query: 296 ---AAVAHSF 302
              A+V + F
Sbjct: 293 RLSASVVYRF 302


>gi|227504400|ref|ZP_03934449.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Corynebacterium striatum ATCC 6940]
 gi|227199048|gb|EEI79096.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Corynebacterium striatum ATCC 6940]
          Length = 344

 Score =  159 bits (401), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 117/343 (34%), Positives = 172/343 (50%), Gaps = 37/343 (10%)

Query: 23  GLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G TS NP V  +I+  +G ++G G T   G PHAEV AL+EAG  ARG  A VTLEPC+H
Sbjct: 21  GTTSPNPPVGAVILDAEGNLVGTGATQPVGGPHAEVMALQEAGSSARGGIAVVTLEPCNH 80

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI----F 137
            GR+ PCA+ +I   I +V     DP+   +G G Q L   GI V ++ E+  ++     
Sbjct: 81  TGRTGPCAEALIAADISQVYFLHPDPNGVAAG-GAQTLRAAGIEVAQI-EAPAELPVSDA 138

Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
           L  +LT     R H+TLK A + D     +   S  ITG  ++  VH+ RA+ DAI++G 
Sbjct: 139 LIPWLTSLRLGRPHVTLKFAQTLDGFTAASDGTSQWITGEHAREWVHVDRARRDAIIIGT 198

Query: 198 GTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
           GT LAD+P LT R     L+E  P R                       V+I   N +  
Sbjct: 199 GTALADNPSLTARFPDGTLREQQPRR-----------------------VVIGQRNLEDA 235

Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
            A +   + +   Y    ++   L  L   G   +LVEGGA +A +F+N+  VD++  Y 
Sbjct: 236 GAASSHLRELG--YDQFANIDDALISLYEAGARDVLVEGGAGLASAFLNAGYVDAVQAYI 293

Query: 316 SQIVIGEGG--IPSPLEEGYLE-KNFMCVRRDYFGSDVCLEYI 355
           + +++GEG   +  P+ +   + + F  V     G DV +EY+
Sbjct: 294 APLLLGEGRGVLAHPVAQTLQDARRFQRVGTTVLGDDVLIEYV 336


>gi|305667257|ref|YP_003863544.1| putative riboflavin biosynthesis protein [Maribacter sp. HTCC2170]
 gi|88709304|gb|EAR01537.1| putative riboflavin biosynthesis protein [Maribacter sp. HTCC2170]
          Length = 350

 Score =  159 bits (401), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 109/333 (32%), Positives = 169/333 (50%), Gaps = 25/333 (7%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           S D  +M  AL  ++  +G T+ NP V  ++V +  +I  G T+  G  HAEV A+    
Sbjct: 2   SLDHLYMQRALLLAKNGLGTTAPNPMVGAVLVCNEKIIAEGYTSPYGGAHAEVNAINSVE 61

Query: 65  EEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           +++    +T YVTLEPCSH+G++PPCA  II+  I RVV+   D   +V+G+G + L + 
Sbjct: 62  DKSILANSTLYVTLEPCSHHGKTPPCADLIIKHNIPRVVIGTLDSHEKVAGKGKRMLEES 121

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG------MAGCGSVPIT 175
           G  V   ++E+  K     +LT    KR +I LK A + D  I        A      IT
Sbjct: 122 GCKVTLGVLENACKEHHKRFLTFHQRKRPYIILKWAQTSDGFIAPDKNKRKAKAEPYWIT 181

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
              S+  VH  R++  AILVG  TVL D+P+L  R       SP+RI++D    +  +  
Sbjct: 182 NSYSRQIVHKWRSEEQAILVGTKTVLDDNPKLNTR--SWAGTSPIRIVMDKKLNIGSNHH 239

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT-----ILVGRGVTSL 290
           ++  +  +P I++T+N D        K+  NI Y +  D  K  T     +L  R + S+
Sbjct: 240 VLDVS--SPTIVITQNTDE------DKRAANIAY-EVIDFSKNQTTQICQVLYKRNIISV 290

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           L+EGGA    +FI+  L D   ++  +    +G
Sbjct: 291 LIEGGAKTLQTFIDENLWDEARVFTGKNNFKKG 323


>gi|146297767|ref|YP_001192358.1| riboflavin biosynthesis protein RibD [Flavobacterium johnsoniae
           UW101]
 gi|146152185|gb|ABQ03039.1| riboflavin biosynthesis protein RibD [Flavobacterium johnsoniae
           UW101]
          Length = 349

 Score =  159 bits (401), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 106/336 (31%), Positives = 167/336 (49%), Gaps = 20/336 (5%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA- 67
           +++   +  +R   G T  NP V  +IV +  +IG G     G PHAEV A+    +++ 
Sbjct: 6   KYIKRCIELARNGFGTTYPNPMVGSVIVYEDTIIGEGWHKKAGEPHAEVNAVRSVKDKSL 65

Query: 68  -RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            + AT YV+LEPCSH+G++PPC   II   I  VVV   DP+ +V+GRG++ L + G  +
Sbjct: 66  LKKATIYVSLEPCSHFGKTPPCCDLIIANKIPNVVVGTVDPNEKVAGRGIKKLIEAGANV 125

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG-----CGSVPITGFISK 180
           V  ++E E       + T   +KR +I LK A S D  +            V IT   S+
Sbjct: 126 VVGILEDECNELNKRFFTFHQKKRPYIILKWAESLDGFLAPEKEIDQERKPVWITNQYSR 185

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             VH  R++  AIL G  TV+ D+P+L  R      ++P+R+ILD + ++S DS +   +
Sbjct: 186 QLVHKWRSEEQAILAGTQTVVDDNPKLNVR--DWSGNNPVRVILDQNNRISKDSFVFDES 243

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
           +   V   +EN        F K     I  D   ++ +L +L    + S+++EGG     
Sbjct: 244 VKTIVFTKSENMISTENTIFEK-----IDFDKNSIENILAVLYQHQIQSIIIEGGRQTLE 298

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
           SFIN  + D      ++I IG+       +   L+K
Sbjct: 299 SFINENIWDE-----ARIFIGKNTFKKGTKAPELQK 329


>gi|88803651|ref|ZP_01119175.1| riboflavin biosynthesis protein ribD [Polaribacter irgensii 23-P]
 gi|88780384|gb|EAR11565.1| riboflavin biosynthesis protein ribD [Polaribacter irgensii 23-P]
          Length = 354

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/360 (30%), Positives = 190/360 (52%), Gaps = 28/360 (7%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAGEE 66
           +++   L+ ++  +G T  NPSV  +IV  G+++G G TA  G  HAEV A+   E  + 
Sbjct: 6   QYIQRCLQIAKNGIGTTRPNPSVGAVIVCKGVIVGEGFTAAYGGNHAEVNAVNSVEHKKL 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
              +T YVTLEPCSH+G++PPCA  II+  I+RVV+   D +  V+G+G++ L   G++V
Sbjct: 66  LVESTLYVTLEPCSHFGKTPPCADLIIKYNIKRVVIGCVDTNSLVAGQGIERLKSAGVVV 125

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP---ITGFISKNQ 182
              ++E+E +     +   Q +KR +I LK A ++D  +      +V    I+   S+  
Sbjct: 126 TVGVLEAECRKHHKRFFVVQEKKRPYIILKWAETKDGFVAPLSKDAVAPKFISNRYSQQL 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LR+Q  AILVG  TVL D+P+L  R      ++P+R++LD    +   + +   ++ 
Sbjct: 186 VHKLRSQEHAILVGKNTVLEDNPKLNVR--SWSGNNPIRVVLDSALGIPESAHVFDGSIT 243

Query: 243 APVI---IVTENDDPVLALAFRKKNINIIYCDCRDLKK-----LLTILVGRGVTSLLVEG 294
             VI   I    +      AF K   N+I+ +  D  K     +  +L+   V SL+VEG
Sbjct: 244 TIVITGKIHGHEEVKTKKYAFNK---NLIF-EPIDFSKNVAEQICVVLLKHQVQSLIVEG 299

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           G     +FI+  L D  +++     +G+    + ++   L+KN+   ++++   D+  +Y
Sbjct: 300 GTQTLATFISENLWDEALVF-----VGDHSFDAGVKAPRLDKNY---KKEHVLEDLIKKY 351


>gi|329956196|ref|ZP_08296876.1| riboflavin biosynthesis protein RibD [Bacteroides clarus YIT 12056]
 gi|328524670|gb|EGF51731.1| riboflavin biosynthesis protein RibD [Bacteroides clarus YIT 12056]
          Length = 347

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 112/330 (33%), Positives = 167/330 (50%), Gaps = 29/330 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + ++M   ++ ++  +   + NP V  ++V DG +IG G     G  HAEV A+    E 
Sbjct: 3   EEKYMRRCIQLAQNGLCNAAPNPMVGAVVVCDGKIIGEGYHVRCGEAHAEVNAIRSVKEP 62

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +  + +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP  +V+GRG+Q L   G 
Sbjct: 63  SLLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFAKVAGRGIQKLKDAGR 122

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181
            V   ++E E +  +  ++T     R +ITLK A S D  I     G  P+  +  ++  
Sbjct: 123 EVTVGVLEQECRNLIRRFITFHTLHRPYITLKWAESADRYIDNFREGGKPVILSNPLTSM 182

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH  RA+  AI+VG  T   D+P LT R    Q  SP+RI++D   KLS +  +     
Sbjct: 183 LVHKKRAEHSAIMVGTRTAELDNPGLTVR--NWQGRSPVRIVIDRKQKLSPELHLF---- 236

Query: 242 LAPVIIVTENDDPVLALAFRKK------NINIIYCDCRD--LKKLLTILVGRGVTSLLVE 293
                     D  V  L F +K      NI  I  D R   L +++  L  +G+ SLLVE
Sbjct: 237 ----------DGNVRTLVFTEKPHSPQSNIEYIPIDFRQNILPQIMEYLYAQGLQSLLVE 286

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GG  +  SFI++ L D   +  S  ++  G
Sbjct: 287 GGNILLQSFIDAELWDEAFVEESPSMLFSG 316


>gi|259502164|ref|ZP_05745066.1| ubiquinol-cytochrome c reductase [Lactobacillus antri DSM 16041]
 gi|259169782|gb|EEW54277.1| ubiquinol-cytochrome c reductase [Lactobacillus antri DSM 16041]
          Length = 352

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/348 (34%), Positives = 172/348 (49%), Gaps = 31/348 (8%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGEEARGATAYVTLEPCSHYG 83
           T  NP V  ++VK+G V+  G T   G  HAE  AL   A  +A GAT YVTLEPC+HYG
Sbjct: 21  TWRNPQVGAVVVKNGHVLATGHTQPYGGSHAERDALSRLAPGQAAGATLYVTLEPCNHYG 80

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYL 142
           + PPC Q II  GIRRVVV   DP   V+G+G+  L Q GI +V  +   +       Y 
Sbjct: 81  KQPPCTQLIINSGIRRVVVAQLDPHALVTGKGVANLRQHGIEVVTGVGAQQAAQVNPHYD 140

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
                 R  +TLK A+S D  +         IT      +VH  RA    I++G  T + 
Sbjct: 141 FFYRHHRPWVTLKQALSLDGRVSAGPGQRTAITNQAVYRRVHQERAGFQGIVIGSTTAIV 200

Query: 203 DDPELTCRLNGLQ-EHSPMRIILDPHFKLS--LDSKIIKTALLAPVIIVTENDDPVLALA 259
           DDP L   L  +Q  H P+RI+LD   +L+   D ++     LAP  + TEN     AL 
Sbjct: 201 DDPTL---LPSVQLAHLPIRIVLDRRGRLADYPDLRLFNDG-LAPTWVFTEN----AALP 252

Query: 260 FRKKNIN--IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
            R       ++  DC  +  ++ +L   GV SL VEGG  + ++F  + LV+ ++ Y S 
Sbjct: 253 DRLGPWARVLVLPDC-SVPAVVQVLAEEGVQSLYVEGGPTIQNAFARAGLVEEVLTYLSP 311

Query: 318 IVIGEGGIP--SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQE 363
           +++G+ G+P  +P E    +             D  LE +G N+ + E
Sbjct: 312 VMLGQEGVPGFAPPETWKFQ-------------DQQLELLGNNVRIAE 346


>gi|148242850|ref|YP_001228007.1| riboflavin biosynthesis protein ribD
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase)
           [Synechococcus sp. RCC307]
 gi|147851160|emb|CAK28654.1| Riboflavin biosynthesis protein ribD
           (Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase)
           [Synechococcus sp. RCC307]
          Length = 366

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 103/289 (35%), Positives = 154/289 (53%), Gaps = 12/289 (4%)

Query: 23  GLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G TS NP V C+++  +G ++G G     G PHAEV AL  AG+ A+G T YVTLEPC H
Sbjct: 25  GRTSPNPLVGCVVLDANGELVGEGYHRQAGEPHAEVMALRRAGDRAKGGTLYVTLEPCCH 84

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140
           +GR+PPC++ +I  G+RRVV+ + DPD RV+G G+  L   G+ ++  + ++E      A
Sbjct: 85  HGRTPPCSEAVIAAGLRRVVIALADPDPRVAGGGIAQLKAAGMEVISGVRQAEAAQQNRA 144

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +L R    R    LK A+S D    +    S  I+   +++ VH LRA  DA++VG GTV
Sbjct: 145 FLHRIRTGRPWGLLKWAMSLDGRTALPNGASQWISSPPARSWVHHLRAAVDAVIVGGGTV 204

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL-- 258
            AD+P LT R  G +   P+R++L     L  D+++      A  ++    + P  A   
Sbjct: 205 RADNPLLTSR--GQRSPEPLRVVLSRTLDLPSDAQLWDQT-SATTLVAHGPEAPAQARQQ 261

Query: 259 --AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
                 + I ++ C   +   LL  L  RG   +L E G  +A + I S
Sbjct: 262 LDQLGVERIELVAC---EPAALLEALAQRGCNRVLWECGPQLAAAAIAS 307


>gi|320546418|ref|ZP_08040733.1| riboflavin biosynthesis protein RibD [Streptococcus equinus ATCC
           9812]
 gi|320448803|gb|EFW89531.1| riboflavin biosynthesis protein RibD [Streptococcus equinus ATCC
           9812]
          Length = 351

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 115/327 (35%), Positives = 169/327 (51%), Gaps = 28/327 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAG 64
           D  +M  A+  ++     T TNP V  +IVKD  VI RG     G  HAE  A+   +  
Sbjct: 2   DKNYMLQAIEEAKRGFRQTYTNPLVGAVIVKDNHVIARGAHLQYGHEHAEKNAILHCQTP 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           EE   +T YVTLEPC H G+ PPC Q I+E GI++VV    DP+  V+G+G+ +L ++GI
Sbjct: 62  EELFNSTLYVTLEPCHHGGKQPPCTQAIVEVGIKKVVAGQFDPNPLVAGKGVAFLKEQGI 121

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +V  ++E E +     Y      KR ++ LK AVS D  I + G  +  +T   +   V
Sbjct: 122 EVVTHVLEEEARALNKHYNVYYERKRPYVVLKQAVSLDGKIAVLGKRTA-LTDDETSRFV 180

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKL--SLDSKIIKT 239
           H  R    AILVG  TVL D+P    RL G +     P+R+ILD   ++   LD +I + 
Sbjct: 181 HDERDDFHAILVGADTVLIDNP----RLLGSETSFCPPVRVILDEKGRVFDQLDLQIFE- 235

Query: 240 ALLAPVIIVTENDDPVLALAFRK-----KNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
                     +N  PV   + RK     K++ +I      ++ +L +L  + + S+ VEG
Sbjct: 236 ----------DNSAPVYIFSSRKVSDLPKHVTVIDLPEFSIENILQVLYEKKLQSVYVEG 285

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321
           GA+V  +F+ S L D II Y +  +IG
Sbjct: 286 GASVHDAFLESGLFDEIISYVTPKLIG 312


>gi|167570902|ref|ZP_02363776.1| riboflavin biosynthesis protein RibD [Burkholderia oklahomensis
           C6786]
          Length = 246

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 94/244 (38%), Positives = 138/244 (56%), Gaps = 7/244 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +   +  T+ NP V C+IV++ +VIG G T   G  HAEVQAL++A
Sbjct: 3   SESDFTHMQRALALAARGMYTTTPNPRVGCVIVQNDVVIGEGFTQPAGQDHAEVQALKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G + R AT YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L 
Sbjct: 63  RARGGDLRDATVYVTLEPCSHFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++  E       +++R    R  + +K A S D    +A   S  ITG  +
Sbjct: 123 DAGIDVRCGLLTHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238
           ++  H  RA++ AIL GIGTV  DDP+L  R  G+     P R+++D    + L +++++
Sbjct: 183 RDDGHKWRARACAILTGIGTVREDDPQLNVR--GVDTPRQPRRVLIDSRLDIPLSARLLE 240

Query: 239 TALL 242
              L
Sbjct: 241 GGSL 244


>gi|300767117|ref|ZP_07077029.1| riboflavin biosynthesis protein RibD [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|300494936|gb|EFK30092.1| riboflavin biosynthesis protein RibD [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
          Length = 355

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 103/320 (32%), Positives = 169/320 (52%), Gaps = 5/320 (1%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGEEAR 68
           FM  A+  ++     T  NP V  ++VKDG V+ +G   Y G  HAEV  L +   E+AR
Sbjct: 5   FMQMAIDQAKLAGVATYQNPQVGAVLVKDGHVLAQGYHHYFGGDHAEVDVLRQVTPEQAR 64

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GAT +VTLEPCSHYG++PPC+  I+  GIR+VV+   DP   V G+G Q+L   G+ +V 
Sbjct: 65  GATLFVTLEPCSHYGKTPPCSARIVAAGIRQVVIGQLDPHPIVGGKGRQYLLNHGVDVVT 124

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
             +  + +     Y    V++R  ITLK A++ D  I         ++   S      LR
Sbjct: 125 GCLTDKVRALNPHYNHFYVQQRPWITLKTAITLDGKINTETPTRTLVSNHASYIDSQCLR 184

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           +Q  AIL+G  T+  DDP+L  RL  + +  P+R+++     ++L+ ++++    AP  +
Sbjct: 185 SQFQAILIGERTLTIDDPQLAVRLTAMVQ-PPVRLVVLNTSTVALNHRLVQDG-QAPTWL 242

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
           +               N++++  +      +  + V +G  SLLVEGGA +   F+ + L
Sbjct: 243 LCRQAAASDDQLRNSPNVHVLIGNWTP-AAISQLCVEQGWQSLLVEGGAHLQAEFVAAEL 301

Query: 308 VDSIILYRSQIVIGEGGIPS 327
           +D  + Y + ++IG  G+P+
Sbjct: 302 IDEWVSYIAPMMIGGTGLPA 321


>gi|260665250|ref|ZP_05866099.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii
           SJ-7A-US]
 gi|313472797|ref|ZP_07813285.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 1153]
 gi|260560987|gb|EEX26962.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii
           SJ-7A-US]
 gi|313448878|gb|EEQ68026.2| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 1153]
          Length = 352

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/345 (32%), Positives = 170/345 (49%), Gaps = 19/345 (5%)

Query: 7   DARFMSAALRFS---RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE- 62
           D  FM  AL  +   R+H   T TNP V  ++VKD  V+  G     G  HAE  A+ + 
Sbjct: 5   DEDFMGLALTEASKGRYH---TWTNPMVGAVVVKDNQVLATGYHHRYGDVHAERDAISKL 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
             E+   +T YVTLEPC+H G+ PPC+  II   I+RVV+   DP   V+G+G++ L   
Sbjct: 62  TPEQLFNSTLYVTLEPCNHTGKQPPCSDLIIASKIKRVVISEIDPHSLVTGKGIKKLKAH 121

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
            I V   ++  E K     Y+        ++TLK A+S D+         + ITG  +  
Sbjct: 122 NISVTTGVLAQEAKKLNQHYVYFYEHNLPYVTLKQALSLDHKCSYPN-KRIQITGNAASQ 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +VH  RA   AI+VG  T L D+P L   +   Q+H P+R+++D   +L      + +  
Sbjct: 181 RVHQERADYQAIMVGSSTALIDNPTLLTSIK--QDHPPIRLVIDRRGRLLNQQLTLFSDN 238

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            AP  I T+N  P LA      ++ +   D   L ++L IL    V S+ VEGG A+  S
Sbjct: 239 RAPTWIFTQN--PELAKTSYPPHVKVFLLDQGTLTEVLQILAQNKVQSVYVEGGPALMKS 296

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-LEKNFMCVRRDY 345
           F+  +L   +I Y S   +G   +     +G+ + +N   ++ +Y
Sbjct: 297 FVEEKLAQELITYFSPTFLGSNAL-----DGFEITENLKLIQPNY 336


>gi|298374645|ref|ZP_06984603.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_1_19]
 gi|298269013|gb|EFI10668.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_1_19]
          Length = 359

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/312 (34%), Positives = 167/312 (53%), Gaps = 19/312 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + ++M+  +  ++   G  S NP V  ++V  G +IG G     G  HAEV A+    +E
Sbjct: 5   EEKYMARCIELAKGGRGNVSPNPMVGAVVVHKGRIIGEGFHRKCGEAHAEVNAIASVKDE 64

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +    +T YV+LEPCSHYG++PPCA+ II  GI RVVV   DP   VSGRG++ L + G+
Sbjct: 65  SLLTDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGCLDPFPEVSGRGVRMLREAGV 124

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG-SVPITGFISKNQ 182
            +V  +ME E +    A++T Q + R +I LK A S+D  I       S P+T   S   
Sbjct: 125 EVVTGVMEEEARALNKAFMTLQTKGRPYIILKWAQSEDGFIDRLRMDVSEPVTVLSSPET 184

Query: 183 ---VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
              VH LR++  AI+VG  T L D+P L  R      +SP+R++LD    +    +++  
Sbjct: 185 SRLVHKLRSEVAAIMVGTRTALLDNPSLNVR--HWSGNSPVRVVLDRRLVIPDSYRLLNG 242

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAA 297
           +  +  +I TE +         ++N+  I  D     ++++L  L  R + SLLVEGG  
Sbjct: 243 S--SRTLIFTEKE------VENRENVEYIRIDFEGPVIRQVLDHLAVRKLDSLLVEGGTQ 294

Query: 298 VAHSFINSRLVD 309
           + +SF+ + + D
Sbjct: 295 LINSFVEADVWD 306


>gi|255532071|ref|YP_003092443.1| riboflavin biosynthesis protein RibD [Pedobacter heparinus DSM
           2366]
 gi|255345055|gb|ACU04381.1| riboflavin biosynthesis protein RibD [Pedobacter heparinus DSM
           2366]
          Length = 353

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/333 (33%), Positives = 164/333 (49%), Gaps = 27/333 (8%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--- 66
           +M   L  +   +G  S NP V C+IV DG +IG G  A  G  HAEV A+         
Sbjct: 6   YMQRCLELAAMGMGNVSPNPMVGCVIVSDGKIIGEGYHARFGEAHAEVNAINSVVHNYGN 65

Query: 67  -----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                   ATAYV+LEPC+H+G++PPCA  +I+  I++VV+   DP   V+G+G++ L  
Sbjct: 66  TAETLLAAATAYVSLEPCAHFGKTPPCADLLIKHRIKKVVIGNTDPFDGVNGKGIEKLKN 125

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +V  ++E+E       + TR  ++  +I LK A S +            I+G  +K
Sbjct: 126 AGIEVVSGVLEAECSQLNRRFFTRIGQQHPYIILKWATSANGYFAPENTTQQWISGPEAK 185

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             VH  R + DA+LVG  T +AD+P LT R       +P+RI++D H ++     I    
Sbjct: 186 KLVHKWRTEEDAVLVGRLTAMADNPRLTVR--EWYGRNPVRIVVDRHLQVPSSHHIYNKE 243

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-----RGVTSLLVEGG 295
             A  II  E    V          NI +    D++  L   +        + S+++EGG
Sbjct: 244 --AKTIIFNEQKTDVQE--------NIHFIQMEDMQHYLPQKIAFQLYLMDIASVIIEGG 293

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
           A V + FI +RL D   ++RS  V    GIPSP
Sbjct: 294 AQVLNQFIQARLWDEARVFRS-AVSWPAGIPSP 325


>gi|148240028|ref|YP_001225415.1| riboflavin biosynthesis protein ribD
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase)
           [Synechococcus sp. WH 7803]
 gi|147848567|emb|CAK24118.1| Riboflavin biosynthesis protein ribD
           (Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase)
           [Synechococcus sp. WH 7803]
          Length = 372

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 115/314 (36%), Positives = 172/314 (54%), Gaps = 14/314 (4%)

Query: 23  GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G TS NP V  +++   G+++G G  A  G PHAEV AL +AG  ARG T  VTLEPC H
Sbjct: 27  GHTSPNPLVGAVVLDSSGVLVGEGFHARAGQPHAEVGALAQAGAAARGGTIIVTLEPCCH 86

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140
           +GR+PPCA  +I+ GI RVVV + DPD RV+G GLQ L   G+ ++  ++E+E      A
Sbjct: 87  HGRTPPCADAVIKAGIARVVVALTDPDPRVAGGGLQRLRDAGVEVISGVLEAEAAHQNLA 146

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           ++ R    R    LK A+S D    ++   S  I+G  +++ VH LRAQ DA++VG GTV
Sbjct: 147 FVYRVRTGRPWGVLKWAMSLDGRTALSNGASQWISGPSARSWVHRLRAQCDAVIVGGGTV 206

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
            ADDP LT R  GL+   P+R++L     L   +++   + +AP ++V   D P  A   
Sbjct: 207 RADDPLLTSR--GLRSPEPLRVVLSRSLDLPDQAQLWDQS-VAPTLVVHGLDAPAGA--- 260

Query: 261 RKKNINIIYCDCRDLK-----KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
            +  ++ +    ++L+      L+ +L  RG   +L E G  +A + I    V  I    
Sbjct: 261 -RSRLDAVGVQRQELQACEPEALMAVLAQRGCNRVLWECGPGLAAAAIQQGCVQDIAAVI 319

Query: 316 SQIVIGEGGIPSPL 329
           +  ++G     +PL
Sbjct: 320 APKLLGGEPARTPL 333


>gi|238855788|ref|ZP_04646080.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 269-3]
 gi|282934748|ref|ZP_06339990.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 208-1]
 gi|238831564|gb|EEQ23909.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 269-3]
 gi|281301189|gb|EFA93491.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 208-1]
          Length = 359

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/345 (32%), Positives = 170/345 (49%), Gaps = 19/345 (5%)

Query: 7   DARFMSAALRFS---RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE- 62
           D  FM  AL  +   R+H   T TNP V  ++VKD  V+  G     G  HAE  A+ + 
Sbjct: 12  DEDFMGLALTEASKGRYH---TWTNPMVGAVVVKDNQVLATGYHHRYGDVHAERDAISKL 68

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
             E+   +T YVTLEPC+H G+ PPC+  II   I+RVV+   DP   V+G+G++ L   
Sbjct: 69  TPEQLFNSTLYVTLEPCNHTGKQPPCSDLIIASKIKRVVISEIDPHSLVTGKGIKKLKAH 128

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
            I V   ++  E K     Y+        ++TLK A+S D+         + ITG  +  
Sbjct: 129 NISVTTGVLAQEAKKLNQHYVYFYEHNLPYVTLKQALSLDHKCSYPN-KRIQITGNAASQ 187

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +VH  RA   AI+VG  T L D+P L   +   Q+H P+R+++D   +L      + +  
Sbjct: 188 RVHQERADYQAIMVGSSTALIDNPTLLTSIK--QDHPPIRLVIDRRGRLLNQQLTLFSDN 245

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            AP  I T+N  P LA      ++ +   D   L ++L IL    V S+ VEGG A+  S
Sbjct: 246 RAPTWIFTQN--PELAKTSYPPHVKVFLLDQGTLTEVLQILAQNKVQSVYVEGGPALMKS 303

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-LEKNFMCVRRDY 345
           F+  +L   +I Y S   +G   +     +G+ + +N   ++ +Y
Sbjct: 304 FVEEKLAQELITYFSPTFLGSNAL-----DGFEITENLKLIQPNY 343


>gi|332881258|ref|ZP_08448908.1| riboflavin biosynthesis protein RibD [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332680634|gb|EGJ53581.1| riboflavin biosynthesis protein RibD [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 358

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 119/336 (35%), Positives = 171/336 (50%), Gaps = 24/336 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAG 64
           D ++MS  ++ +R      + NP V  +IV DG +IG G     G PHAEV A+      
Sbjct: 4   DEKYMSRCIQLARNGFYGAAPNPMVGAVIVHDGKIIGEGYHVRCGGPHAEVNAIRFVRNP 63

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E  + +T YV+LEPCSHYG++PPCA  I+E GI RVVV   DP  +V+GRG++ L + GI
Sbjct: 64  ELLKESTIYVSLEPCSHYGKTPPCADLIVEKGIPRVVVGCMDPFAKVAGRGIRKLQESGI 123

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG---------SVPI 174
            V   ++E+E       ++T     R +ITLK A S D  +               S P 
Sbjct: 124 EVTVGVLEAECLALNRRFITFHTHHRPYITLKWAESADGFMDSLRTDYEKEKPYAFSTPY 183

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           T  +    VH  RA+  AILVG  T LAD+P L  R+      SP+R+++D    L    
Sbjct: 184 TRML----VHRCRAEHQAILVGRQTALADNPSLNLRM--WPGKSPLRLVIDRRGDLPGHL 237

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD-CRD-LKKLLTILVGRGVTSLLV 292
            +        V +   +   VL    ++  +  +  D  RD L ++L  L    V SLLV
Sbjct: 238 ALFNDGAETRVYLDVLS---VLPPYGKQTGVTCVRLDFSRDILPQILDDLYRLSVQSLLV 294

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
           EGG  +  SFI++ L D I + +S + + E G+PSP
Sbjct: 295 EGGHRLLESFISAGLWDEIRVEQSPVFLKE-GVPSP 329


>gi|307326834|ref|ZP_07606026.1| riboflavin biosynthesis protein RibD [Streptomyces violaceusniger
           Tu 4113]
 gi|306887597|gb|EFN18591.1| riboflavin biosynthesis protein RibD [Streptomyces violaceusniger
           Tu 4113]
          Length = 369

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 112/327 (34%), Positives = 167/327 (51%), Gaps = 11/327 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE 61
            ++ +A+ M  A+  +   +G TS NP V C+I+   G V+G G     G PHAEV AL 
Sbjct: 2   ATAAEAQAMRHAVALAARGLGHTSPNPVVGCVILDAGGRVVGEGWHQRAGGPHAEVHALR 61

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG+ ARG TA VTLEPC H GR+ PC+Q +I  GI RV   V DP  +  G      + 
Sbjct: 62  AAGDRARGGTALVTLEPCDHTGRTGPCSQALIAAGIARVHYAVGDPTAQARGGAATLAAA 121

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
              +   ++  E +     +LT     R  +  K A + D     A   S  IT   S+ 
Sbjct: 122 GVEVEAGLLAEEAEAVNEPWLTAMRRGRPFVLWKFAATLDGRSAAADGTSRWITSPESRA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            VH LRA++DA++VG GT  ADDP L  R   G+ +  P+R+++D    +   ++I+  A
Sbjct: 182 DVHRLRAEADAVVVGSGTQRADDPHLAVRDREGVTQ--PLRVVVDTAATIKPGARILDDA 239

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGA 296
             AP ++    D     L  R+  +  +     D    +  LL  L GRGV S+L+EGG 
Sbjct: 240 --APTLLAVAEDASTAHLP-RRPGVETVRLPRADGGLAIPALLAELHGRGVRSVLLEGGP 296

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +A +F+ +  VD +I Y + +++G G
Sbjct: 297 TLAGAFLAAGAVDKVIGYLAPVLLGAG 323


>gi|253571299|ref|ZP_04848706.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 1_1_6]
 gi|251839252|gb|EES67336.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 1_1_6]
          Length = 345

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 175/342 (51%), Gaps = 20/342 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + ++M   +  ++  +   + NP V  +IV DG++IG G     G  HAEV A+    ++
Sbjct: 3   EEKYMRRCIELAKNGLCNVAPNPMVGAVIVCDGLIIGEGYHIRCGEAHAEVNAIRSVKDK 62

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +    +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP  +V+GRG+Q L   G 
Sbjct: 63  SLLSRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSQVAGRGIQKLRDAGR 122

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181
            V   ++E E +  +  ++T     R  ITLK A S D+ I +      P+  +  ++  
Sbjct: 123 EVTVGVLEKECRYLIRRFITFNTLHRPFITLKWAESADHFIDVERTDGNPVVLSSPLTSM 182

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH  RA++DAI+VG  T L D+P LT R       +P+RI+LD    L    ++    +
Sbjct: 183 LVHKKRAETDAIMVGRRTALLDNPSLTVR--NWYGRNPVRIVLDRALSLPHSLRLFDGEV 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVA 299
             P I+ T    P       KKN+     +     L +++ +L  + + SLLVEGG+ + 
Sbjct: 241 --PTIVFTAEKHP------DKKNVTYRTIEFTQDILPQIMKVLYQQKIQSLLVEGGSQLL 292

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY---LEKNF 338
            SFI++ L D + + +    +  G     + + +    EK+F
Sbjct: 293 QSFIDAELWDEVYIEKCPCKLNSGVKAPEISDNFSYSTEKHF 334


>gi|298386833|ref|ZP_06996388.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 1_1_14]
 gi|298260507|gb|EFI03376.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 1_1_14]
          Length = 345

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 175/342 (51%), Gaps = 20/342 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + ++M   +  ++  +   + NP V  +IV DG++IG G     G  HAEV A+    ++
Sbjct: 3   EEKYMRRCIELAKNGLCNVAPNPMVGAVIVCDGLIIGEGYHIRCGEAHAEVNAIRSVKDK 62

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +    +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP  +V+GRG+Q L   G 
Sbjct: 63  SLLSRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSQVAGRGIQKLRDAGR 122

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181
            V   ++E E +  +  ++T     R  ITLK A S D+ I +      P+  +  ++  
Sbjct: 123 EVTIGVLEKECRYLIRRFITFNTLHRPFITLKWAESADHFIDVERTDGNPVVLSSPLTSM 182

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH  RA++DAI+VG  T L D+P LT R       +P+RI+LD    L    ++    +
Sbjct: 183 LVHKKRAETDAIMVGRRTALLDNPSLTVR--NWYGRNPVRIVLDRALSLPHSLRLFDGEV 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVA 299
             P I+ T    P       KKN+     +     L +++ +L  + + SLLVEGG+ + 
Sbjct: 241 --PTIVFTAEKHP------DKKNVTYRTIEFTQDILPQIMKVLYQQKIQSLLVEGGSQLL 292

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY---LEKNF 338
            SFI++ L D + + +    +  G     + + +    EK+F
Sbjct: 293 QSFIDAELWDEVYIEKCPCKLNSGVKAPEISDNFSYSTEKHF 334


>gi|258405543|ref|YP_003198285.1| riboflavin biosynthesis protein RibD [Desulfohalobium retbaense DSM
           5692]
 gi|257797770|gb|ACV68707.1| riboflavin biosynthesis protein RibD [Desulfohalobium retbaense DSM
           5692]
          Length = 384

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/361 (30%), Positives = 177/361 (49%), Gaps = 19/361 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
           M  A+       G T+ NP V  +I ++G V+  G     G PHAEV+A+ +A   G + 
Sbjct: 1   MQHAVELGETGFGRTAPNPCVGAVITRNGAVMAEGYHTACGAPHAEVEAIAQARAAGVDL 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
              T +VTLEPC+H+GR+PPC + IIE GIR V +   DP+  V G G  +L  +G+ V+
Sbjct: 61  SECTLWVTLEPCNHHGRTPPCTKAIIEAGIRSVGIGTLDPNPHVGGGGTAFLRDQGVEVE 120

Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++E   +  +  +L  Q EKR  + LK+A + D  I      S  ++G  ++ +VH L
Sbjct: 121 VGILEPACRDLIADFLLWQQEKRPGVLLKLAATLDGKIATRSGHSAWVSGPEAREEVHGL 180

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R + D +LVG GT+ AD+P LTCR        P+ +++      + D   +        I
Sbjct: 181 RGRVDGVLVGGGTLRADNPRLTCRSERALNKQPLALVVTSRLPEAQDDLHLLRHRPQETI 240

Query: 247 IVTEND-------DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT-SLLVEGGAAV 298
             T +D       D + AL  R  ++ +      DL+  LT    +G+  ++L EGG  +
Sbjct: 241 FWTTDDQSRTPQADALRALGCRIWDLPLTASGMLDLRAGLTHFFDQGLGHTILCEGGGRL 300

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN------FMCVRRDYFGSDVCL 352
           A +     L D + LY +  ++G+    + L  G  E +      +   R    G+D+CL
Sbjct: 301 ALALAEQGLADRLRLYLAPKILGDATAIN-LFSGRDELDMGQALPWRFTRSRQVGADMCL 359

Query: 353 E 353
           E
Sbjct: 360 E 360


>gi|260063122|ref|YP_003196202.1| riboflavin biosynthesis protein RibD [Robiginitalea biformata
           HTCC2501]
 gi|88784691|gb|EAR15861.1| riboflavin biosynthesis protein RibD [Robiginitalea biformata
           HTCC2501]
          Length = 350

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/343 (32%), Positives = 169/343 (49%), Gaps = 26/343 (7%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           ++M   ++  R  +G ++ NP V  L+     +IG G T+  G PHAEV A+    +  +
Sbjct: 6   KYMLRCIQIGRNALGRSAPNPMVGALLTHGDTIIGSGYTSAFGGPHAEVNAIRSVADPGK 65

Query: 69  --GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
              +T YVTLEPC H+G++PPC   IIE GIRRVVV + DP  +V+G+G+  L + G  V
Sbjct: 66  LPDSTLYVTLEPCCHHGKTPPCTDRIIESGIRRVVVGLPDPHDKVAGQGIAQLREAGCQV 125

Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGM------AGCGSVPITGFIS 179
           +  + ++     H  +LT   + R +I LK A S D  +           G   ITG  S
Sbjct: 126 EVGVAADACREHHKRFLTLHEKGRPYIVLKWAQSPDGFLAPDPEVRGESTGPWWITGRES 185

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  VH  R Q  AILVG  T  ADDP+LT R        P+R++LDP  +     +++  
Sbjct: 186 RQLVHKWRTQESAILVGWRTAAADDPQLTSR--DWAGKDPLRVLLDPSGRAPEGLRLLDG 243

Query: 240 ALLAPVIIVTENDDPVLALA-----FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
            +  P + V          A     F +     +   CR+L++       RGV S+LVEG
Sbjct: 244 KV--PTLRVLHTGQQPTGSARVENIFLEPGPGFLRALCRELRE-------RGVLSILVEG 294

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
           GA    SF+++ L D   ++     +  GG+ +P   G L  N
Sbjct: 295 GAHTLGSFLSAGLWDEARVFTGPRPL-NGGLRAPALSGRLVAN 336


>gi|78185053|ref|YP_377488.1| riboflavin biosynthesis protein RibD [Synechococcus sp. CC9902]
 gi|78169347|gb|ABB26444.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Synechococcus sp. CC9902]
          Length = 349

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/345 (32%), Positives = 178/345 (51%), Gaps = 18/345 (5%)

Query: 23  GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G TS NP V  +++ + G ++G G  A  G PHAEV AL +AG+ A+G T  VTLEPC H
Sbjct: 13  GHTSPNPLVGAVVLDQHGCLVGEGFHARAGEPHAEVGALAQAGDRAKGGTLVVTLEPCCH 72

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140
           +G +PPCA  +++ GI RVV+ ++DPD RV+G G+  L   G+ ++  ++++E      A
Sbjct: 73  HGLTPPCADAVLKAGIHRVVIALEDPDPRVAGGGIARLRSAGLEVMSGVLQAEAVFQNRA 132

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +L R    R   TLK A+  D    +    S  I+G +++  VH LR++SDA++VG GTV
Sbjct: 133 FLHRVRTGRPWGTLKWAMGLDGRNALTNGESQWISGPMARQWVHQLRSKSDAVIVGGGTV 192

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV---TENDDPVLA 257
             DDP LT R  G +   P+R++L    +L   +++  T  LAP ++       D P  +
Sbjct: 193 RTDDPLLTSR--GRRMPEPLRVVLSRSMELPELAQLWDTT-LAPTLVAHGPESQDRPFPS 249

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
              R      +     + + L+  L  RG   +L E G  +A + I    +  +    + 
Sbjct: 250 GPQR------LLLSASEPEPLMQELANRGCNRVLWECGPELAAAAIRQGCIQDVAAVVAP 303

Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362
            ++  GG+P+    G L   F  + +   GS +    +G +   Q
Sbjct: 304 KLM--GGVPARTPLGDL--GFTAMDQVVAGSFLSPVPLGDDWLFQ 344


>gi|325846504|ref|ZP_08169419.1| riboflavin biosynthesis protein RibD [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481262|gb|EGC84303.1| riboflavin biosynthesis protein RibD [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 359

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 161/334 (48%), Gaps = 25/334 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M      ++   G T  NP V  ++VKDG +I  G     G  HAEV       E 
Sbjct: 3   DKYYMKKCFDLAKNARGKTLKNPLVGAVLVKDGKIISTGYHHEYGKVHAEVDCFNNLKEN 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GA  YV LEPCSHYG+  PC   II+  I++V++   D + +V   GL+ L +KGI V
Sbjct: 63  ADGAVLYVNLEPCSHYGKQGPCTLEIIKRNIKKVIISNIDTNPKVD--GLKVLREKGIEV 120

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E EGK     +       R  I LK A + D  I      S  I+   S+  VH 
Sbjct: 121 QTGLLEDEGKKLNEKFFFNIKYNRPLIALKYAQTLDGKISSNTNDSKWISNEFSREYVHR 180

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLS---LDSKIIKTAL 241
           LR   DAI+VG  T++ D+P L  R+ NG+    P+R+I+D + ++     D KI     
Sbjct: 181 LRNDYDAIIVGKNTLIHDNPSLNSRIENGI---DPVRVIVDTNLEIEKNYKDYKIFNLNS 237

Query: 242 LAPVIIVT--ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295
                I T  + D+P         ++N+I C  +    DL+ L+  L    + S+LVEGG
Sbjct: 238 DKKTYIATCKDTDNP---------DLNLIKCKMKNNHVDLEDLVNKLYEMNIGSILVEGG 288

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
           + + + F+   LVD I  + S  +IG     SP 
Sbjct: 289 SILNYDFLEEGLVDKIYEFISPQIIGGFNSKSPF 322


>gi|319955752|ref|YP_004167019.1| riboflavin biosynthesis protein ribd [Cellulophaga algicola DSM
           14237]
 gi|319424412|gb|ADV51521.1| riboflavin biosynthesis protein RibD [Cellulophaga algicola DSM
           14237]
          Length = 351

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/322 (34%), Positives = 167/322 (51%), Gaps = 26/322 (8%)

Query: 22  VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR--GATAYVTLEPC 79
           +G T+ NP V  +IV +  +IG G T+  G PHAEV A+    ++     AT YVTLEPC
Sbjct: 19  LGTTAPNPMVGAVIVHENKIIGEGYTSPYGGPHAEVNAINAVADKNLLVNATIYVTLEPC 78

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFL 138
           SH+G++PPCA  II+  I+ VVV + DP  +V+G+G+Q L   G  V   ++E+E +   
Sbjct: 79  SHHGKTPPCADLIIKHKIKNVVVGLLDPHEKVAGQGIQKLKDAGCTVTVGVLENECREHH 138

Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMI----GMAGCGSVP--ITGFISKNQVHLLRAQSDA 192
             +LT Q + R +I LK A + D  I     +      P  IT   S+  VH  RA+  A
Sbjct: 139 KRFLTFQEKNRPYIILKWAETADGFIAPELALRTKEKQPFWITNTYSRQLVHQWRAEEQA 198

Query: 193 ILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD----SKIIKTALLAPVIIV 248
           ILVG  TVLAD+P+L  R       +P RIILD + K++       K IKT +   ++  
Sbjct: 199 ILVGTHTVLADNPKLDVR--SWTGKNPTRIILDRNLKINTTFHVVDKSIKTIIFTEILEE 256

Query: 249 TENDDPVLALAFR-KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
           +     V+ +    KKNI    C         T L  + + S+++EGG     +FI   L
Sbjct: 257 SRYQSEVIYIPIDFKKNIASQIC---------TALYLQNIQSVIIEGGLQTLQTFIAENL 307

Query: 308 VDSIILYRSQIVIGEGGIPSPL 329
            D   +++   +  + G+ +P+
Sbjct: 308 WDEARIFKGNSLF-KRGVKAPI 328


>gi|126696788|ref|YP_001091674.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. MIT 9301]
 gi|126543831|gb|ABO18073.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. MIT 9301]
          Length = 364

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 177/360 (49%), Gaps = 13/360 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
            ++M  A+  +      TS NP V  +I+ K+G +I  G     G PHAE  A      +
Sbjct: 9   TKWMKRAIFLASLGKNTTSPNPRVGAVILDKNGSLISEGFHFKAGMPHAEAMAFNNLKND 68

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+G T YV LEPC H G++PPC   +I  G+++V + ++DPD RVSG+G++ L + GI V
Sbjct: 69  AKGGTMYVNLEPCCHQGKTPPCVDKVISSGLKKVYISMEDPDERVSGKGIKLLKEAGIQV 128

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  + + E      A++ R   K++   LK A+S D  I +    S  IT   S++ VH 
Sbjct: 129 NLGLCKKESLDLNKAFIHRNTTKKAFGVLKWAMSIDGRIALKNGKSKWITNDESRSLVHS 188

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            RA+ DAI++G  T+  D+P LT R  G +   P+R++      L   S +   +    +
Sbjct: 189 FRAEFDAIIIGGNTLRRDNPFLTTR--GSKNPEPLRVVFTKSLDLPSKSNLWDCSKAKTL 246

Query: 246 IIVTEN--DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           +I   +  ++  L+   +   +  +  D  +L  +  IL  RG   +L E G  +A + I
Sbjct: 247 VIYDSSTANESYLSRIPKCVEVEKVLSDNPEL--ISKILAKRGCNKVLWECGPNLATAAI 304

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR-----DYFGSDVCLEYIGKN 358
            S  +  II + +  ++G      P  +   E+    ++         G+D+C++ + KN
Sbjct: 305 QSNCIQEIITFIAPKILGGENSMHPFGDFEFEEMHEVIKLSNSQVSLIGNDICVKSLCKN 364


>gi|33861821|ref|NP_893382.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
 gi|33640189|emb|CAE19724.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
          Length = 362

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 163/319 (51%), Gaps = 8/319 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D ++M  A+  +    G TS NP V  +I+ K+G +I  G  +  G PHAE  A     +
Sbjct: 8   DIKWMKRAIYLASLGKGRTSPNPMVGAVILDKNGNLISEGFHSKSGMPHAEAMAFNNLKK 67

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +AR  T YV LEPC H G++PPC   II  GI+RV V ++DPD R+SG+G++ L   GI 
Sbjct: 68  DARDGTIYVNLEPCCHQGKTPPCVDKIISFGIKRVFVSIEDPDKRMSGKGIKLLKDAGIK 127

Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   + + E K    +++ + +   ++  +K A+S D  +G+    S  IT   S++ VH
Sbjct: 128 VHLGLCKKESKELNKSFIHKNITDNAYGVMKWAMSMDGRVGLKNGKSKWITNKDSRSLVH 187

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LRA  DAI++G  T+  DDP LT R  G++   P+R++      L + S +    L   
Sbjct: 188 SLRASFDAIVIGGNTLRKDDPFLTSR--GIRNPEPLRVVFTKTLNLPVKSNLWDCKLART 245

Query: 245 VII--VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           +++   +  D+  L        I  +  D   L  L  +L  +G  ++  E G  +A S 
Sbjct: 246 LVVYDASTADEKFLKRIPEGVEIEKLSSDNPIL--LSNLLAKKGCNNVFWECGPKLATSA 303

Query: 303 INSRLVDSIILYRSQIVIG 321
           + +  +  ++ + +  ++G
Sbjct: 304 MKAGCIQELMTFIAPKILG 322


>gi|108799353|ref|YP_639550.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. MCS]
 gi|119868469|ref|YP_938421.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. KMS]
 gi|126435011|ref|YP_001070702.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. JLS]
 gi|108769772|gb|ABG08494.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. MCS]
 gi|119694558|gb|ABL91631.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. KMS]
 gi|126234811|gb|ABN98211.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. JLS]
          Length = 333

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 156/304 (51%), Gaps = 33/304 (10%)

Query: 23  GLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G T  NP V  +I+  DG V G G T   G PHAEV AL  AG +A G TA VTLEPC+H
Sbjct: 19  GGTYPNPPVGAVILDADGEVAGVGATQPPGGPHAEVMALRRAGRKAAGGTAVVTLEPCNH 78

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR--MMESEGKIFLH 139
           +GR+PPC   ++   +  VV  V DP+   +G G   L + G+ V    + ++     L 
Sbjct: 79  HGRTPPCVDALLAAEVSAVVYAVPDPNPVAAG-GAARLGESGVTVTAGVLGDAVAGGVLR 137

Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199
            +L +Q   + H+T K A S D     A   S  IT   ++  VH  RA +DAI+VG GT
Sbjct: 138 EWLHKQRTGKPHVTWKFATSVDGRSAAADGSSQWITSEAARTDVHRRRAVADAIVVGTGT 197

Query: 200 VLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
           VL DDP LT RL    L E  P+R+++    ++S DS+++             NDD    
Sbjct: 198 VLVDDPVLTARLPDGSLAERQPLRVVVG-KREISSDSRVL-------------NDD---- 239

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
                     +    RD +++L  L  R  T +++EGG  +A +F+ +  +D I+ Y + 
Sbjct: 240 -------SRTMVIRTRDPQEVLRALSDR--TDVILEGGPTLAGAFLRAGAIDRIVAYVAP 290

Query: 318 IVIG 321
           I++G
Sbjct: 291 ILLG 294


>gi|227514654|ref|ZP_03944703.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Lactobacillus fermentum ATCC 14931]
 gi|227086963|gb|EEI22275.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Lactobacillus fermentum ATCC 14931]
          Length = 345

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/310 (34%), Positives = 152/310 (49%), Gaps = 19/310 (6%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGEEARGATAYVTLEPCSHYG 83
           T  NP V  +IVKDG ++  G     G  HAE  A+ + + E+  GAT YVTLEPC HYG
Sbjct: 15  TWKNPQVGAVIVKDGQLLATGYHHQYGQAHAERDAISKLSNEQLAGATIYVTLEPCFHYG 74

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYL 142
           + PPC+Q +I+    RVVV   DP   V G+G+  L   GI V+  +++ + +     Y 
Sbjct: 75  KQPPCSQLLIDSHFARVVVATIDPHQVVGGKGIAQLKAAGIDVEVGLLKDQAEALNRHYF 134

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
               ++R  IT K A+S D  +  A   +  IT   ++  VH  RA   AI+VG GTVLA
Sbjct: 135 YFYRQQRPWITAKQALSLDGKVAAAPGQATAITNQAARRLVHQERADYHAIVVGAGTVLA 194

Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTALLAPVIIVTEN------DDPV 255
           DDP L C    L    P+R+ILD   + L    + + T   AP  +VT N      D P 
Sbjct: 195 DDPRLLCETPQL--FPPVRVILDRAGRLLDYQDRFVFTDASAPTWLVTTNRAATKVDWPA 252

Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
                   ++ +      D  +LL       + SL VEGG AV      +  V+ +I Y 
Sbjct: 253 --------HVTVKLLQNGDWPELLDYFKEAELQSLYVEGGPAVLTELFQAVPVNQLITYL 304

Query: 316 SQIVIGEGGI 325
              +IG+ G+
Sbjct: 305 DPQIIGDQGL 314


>gi|53711798|ref|YP_097790.1| riboflavin biosynthesis protein RibD [Bacteroides fragilis YCH46]
 gi|52214663|dbj|BAD47256.1| riboflavin biosynthesis protein RibD [Bacteroides fragilis YCH46]
          Length = 340

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 176/342 (51%), Gaps = 34/342 (9%)

Query: 26  STNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--RGATAYVTLEPCSHYG 83
           S NP V  +IV +G +IG G     G  HAEV A+    + +  + +T YV+LEPCSH+G
Sbjct: 16  SPNPMVGAVIVCEGQIIGEGYHIRCGEAHAEVNAIRSVKDPSLLKHSTIYVSLEPCSHHG 75

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYL 142
           ++PPCA  IIE  I R+V+   DP  +V+G+G+Q L   G  ++  ++E+E +  +  ++
Sbjct: 76  KTPPCADLIIEKQIPRIVIGCQDPFSKVAGKGIQKLRDAGCEVIVGVLETECRELIRKFI 135

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQVHLLRAQSDAILVGIGTV 200
           T     R +I LK A S D  I +      P+  +  ++   VH  RA+SDAI+VG  T 
Sbjct: 136 TFHTLHRPYIVLKWAESADGFIDLERTEGQPVILSTPLTSMLVHKKRAESDAIMVGTRTA 195

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
           L D+P LT R      H+P+RI++D +  L   S +              +D+ V  L F
Sbjct: 196 LLDNPALTVR--NWHGHNPVRIVMDRNHSLPQTSHL--------------SDNSVSTLVF 239

Query: 261 R------KKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
                  K+N+  I  + +   L ++L+ L  R + SL++EGG  +  SFI S + D +I
Sbjct: 240 TEHPRAGKENLEYITLNYQTDILPQILSALYQRNLQSLMIEGGRILLESFIRSGIWDEVI 299

Query: 313 LYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDV 350
           + +S  ++   G+ +P     +    EK+F    R Y   + 
Sbjct: 300 IEKSDKLL-YSGVKAPEISDKISYSEEKHFCTTFRHYLKRNT 340


>gi|228469568|ref|ZP_04054561.1| riboflavin biosynthesis protein RibD [Porphyromonas uenonis 60-3]
 gi|228308918|gb|EEK17593.1| riboflavin biosynthesis protein RibD [Porphyromonas uenonis 60-3]
          Length = 338

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 117/341 (34%), Positives = 170/341 (49%), Gaps = 27/341 (7%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D  +M   L+ +    G TS NP V  +IV    +IG G   Y G PHAEV A    
Sbjct: 7   TTPDEIYMQRCLQLAALAQGRTSPNPMVGSVIVYKDKIIGEGYHHYAGAPHAEVMAWRSV 66

Query: 64  GEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
            EE RG    AT YV+LEPC+HYG++PPCA+ I      RVVV + DP  +V GRG+  L
Sbjct: 67  PEELRGLVGEATWYVSLEPCAHYGKTPPCAELIAGLRPARVVVAMLDPFAKVDGRGVARL 126

Query: 120 SQKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGM----AGCGSVPI 174
            + GI V      +  I L+  +L  Q   R ++TLK A S D+ I      A       
Sbjct: 127 REAGIEVSIGCLEQAAIALNRHFLVAQTLGRPYVTLKWAESADHYIDRLRHDASEAPYIF 186

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIIL------DPH 227
           +  + +  VH LR   DAILVG  T   DDP LT R   G Q   P+R++        P 
Sbjct: 187 SSPLRQRSVHRLRGLHDAILVGHHTAELDDPLLTNRSGCGGQ---PIRLLWCHSRLPRPE 243

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
            ++  D+      LL P ++    D           +++ +     +++ LLT+L  +G+
Sbjct: 244 LRMLQDATARTIILLPPTLMAQVPD------GQYPPHVSCL-ATTGEVRDLLTLLRSQGI 296

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
            SLLVEGGA V   F++S L D + +  + + + + G+P+P
Sbjct: 297 ESLLVEGGAQVLQRFLDSGLYDELNVEHAPVELHD-GVPAP 336


>gi|113954800|ref|YP_730035.1| riboflavin biosynthesis protein RibD [Synechococcus sp. CC9311]
 gi|113882151|gb|ABI47109.1| riboflavin biosynthesis protein RibD [Synechococcus sp. CC9311]
          Length = 365

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/359 (32%), Positives = 183/359 (50%), Gaps = 16/359 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +M  AL+ +    G TS NP V  +++   G ++G G  A  G  HAEV AL +AG  A+
Sbjct: 11  WMRRALQLAALAEGQTSPNPLVGAVVLDAQGALVGEGFHAKAGQAHAEVGALAQAGGRAK 70

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           G T  VTLEPC H GR+PPC++ +I+ GI+RVVV + DPD RV+G G+Q L   G+ ++ 
Sbjct: 71  GGTIIVTLEPCCHQGRTPPCSEAVIQAGIQRVVVALKDPDPRVAGGGIQRLRDAGLEVIT 130

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++E+E      A++ R    R    LK A+S D    +    S  I+   ++  VH LR
Sbjct: 131 GVLEAEAAHQNRAFIHRVQTGRPWGLLKWAMSLDGRTALPNGESQWISAPPARGWVHQLR 190

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           A  DA++VG GTV AD+P LT R  G++   P+R++L     L   +++  T L + ++ 
Sbjct: 191 AGCDAVIVGGGTVRADNPLLTSR--GVRAPEPLRVVLSRSLDLPPQAQLWDTTLASTLLA 248

Query: 248 VTEN--DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
                 D P   L    + + ++  +  D   LL  L  RG   +L E G ++A   +  
Sbjct: 249 HGPGCADRP---LPEGPERLELLASEPLD---LLHALAPRGCNRVLWECGPSLAAQAVKQ 302

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQEL 364
             V  + +  +  ++G     +PL     E  F  + +    S +  E++G +L L  L
Sbjct: 303 GCVQELAVVIAPKLLGGTLARTPLG----ELGFSAMDQVIPLSALTAEWLGCDLLLGAL 357


>gi|289675578|ref|ZP_06496468.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           syringae FF5]
          Length = 194

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 115/188 (61%), Gaps = 1/188 (0%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D  +M+ AL  +R  +  T  NP V C+IV++G ++G G  A  G PHAEV AL +A
Sbjct: 6   AALDVHYMARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQA 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPCSH GR+PPCA  +IE G+ RVV  + DP+  VSGRGL  L   G
Sbjct: 66  GELARGATAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNAG 125

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++ESE +     +L R      ++ +K+A+S D    MA   S  ITG  +++ 
Sbjct: 126 ISVQCGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSA 185

Query: 183 VHLLRAQS 190
           V  LRA S
Sbjct: 186 VQRLRAPS 193


>gi|60680029|ref|YP_210173.1| putative riboflavin biosynthesis protein [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Bacteroides fragilis NCTC 9343]
 gi|60491463|emb|CAH06213.1| putative riboflavin biosynthesis protein [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Bacteroides fragilis NCTC 9343]
          Length = 340

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 176/342 (51%), Gaps = 34/342 (9%)

Query: 26  STNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--RGATAYVTLEPCSHYG 83
           S NP V  +IV +G +IG G     G  HAEV A+    + +  + +T YV+LEPCSH+G
Sbjct: 16  SPNPMVGAVIVCEGQIIGEGYHIRCGEAHAEVNAIRSVKDPSLLKHSTIYVSLEPCSHHG 75

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYL 142
           ++PPCA  IIE  I R+V+   DP  +V+G+G+Q L   G  ++  ++E+E +  +  ++
Sbjct: 76  KTPPCADLIIEKQIPRIVIGCQDPFSKVAGKGIQKLRDAGCEVIVGVLETECRELIRKFI 135

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQVHLLRAQSDAILVGIGTV 200
           T     R +I LK A S D  I +      P+  +  ++   VH  RA+SDAI+VG  T 
Sbjct: 136 TFHTLHRPYIVLKWAESADGFIDLERTEGQPVILSTPLTSMLVHKKRAESDAIMVGTRTA 195

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
           L D+P LT R      H+P+RI++D +  L   S +              +D+ V  L F
Sbjct: 196 LLDNPALTVR--NWYGHNPVRIVMDRNHSLPQTSHL--------------SDNSVSTLVF 239

Query: 261 R------KKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
                  K+N+  I  + +   L ++L+ L  R + SL++EGG  +  SFI S + D +I
Sbjct: 240 TEHPRSGKENLEYITLNYQTDILPQILSALYQRNLQSLMIEGGRILLESFIRSGIWDEVI 299

Query: 313 LYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDV 350
           + +S  +I   G+ +P     +    EK+F    R Y   + 
Sbjct: 300 IEKSDKLI-YSGVKAPEISDKISYSEEKHFCTTFRHYLKRNT 340


>gi|16331497|ref|NP_442225.1| riboflavin biosynthesis protein [Synechocystis sp. PCC 6803]
 gi|2833460|sp|Q55158|RIBD_SYNY3 RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
           RecName:
           Full=Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase; Includes: RecName:
           Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|1001153|dbj|BAA10295.1| riboflavin biosynthesis protein [Synechocystis sp. PCC 6803]
          Length = 368

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 102/326 (31%), Positives = 167/326 (51%), Gaps = 3/326 (0%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D   M   L  ++  +G T+ NP V  +IV+   ++G+G     G PH E+ AL EAG+ 
Sbjct: 4   DQTHMRRCLTLAKTAIGKTAPNPLVGSVIVQGDEIVGQGFHPQAGQPHGEIFALWEAGDR 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YV LEPC+H GR+PPC + II+ GI +VVV + DP+  V+G+G+  L Q GI V
Sbjct: 64  AKGATLYVNLEPCNHQGRTPPCTEAIIQAGIAKVVVGMVDPNPLVAGKGISRLRQAGIEV 123

Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +E E    L+ A+  R   +R     K A++ D  I  A   S  +T   +++ VH 
Sbjct: 124 KVGVEEEACQRLNEAFCFRIKHQRPFGIFKYAMTLDGKIATAQAHSSWVTSSSARHWVHQ 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR+Q  A+++G  TV  D+P LT   +G+ E +P+R++L     L +++++    +   +
Sbjct: 184 LRSQCQAVIIGGNTVRRDNPLLTN--HGVGEVNPLRVVLSRSLDLPIEAQLWDQDVAKTL 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           +I  +  D        K  +  +  +      ++  L  R    +L E G  +A   I  
Sbjct: 242 VITEKTCDRNTLSHLEKLEVETLVLEQLTPLAVMEELYQRNCLQVLWECGGILAAEAIAM 301

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEE 331
             V  +  + +  +IG    P+P+ E
Sbjct: 302 GTVQKVHAFLAPKIIGGVAAPTPVGE 327


>gi|78779743|ref|YP_397855.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. MIT 9312]
 gi|78713242|gb|ABB50419.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. MIT 9312]
          Length = 364

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 104/356 (29%), Positives = 176/356 (49%), Gaps = 8/356 (2%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           ++M  A+  +    G TS NP V  +I+ K+G +I  G     G PHAEV A     +E 
Sbjct: 10  KWMKRAIFLASLGKGKTSPNPLVGAVILDKNGNLISEGFHYKAGEPHAEVMAFNNLKKEV 69

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           +    YV LEPC H+G++PPC   +I  GI+++ + + DPD RVSG+G++ L Q GI V 
Sbjct: 70  KDGYMYVNLEPCCHHGKTPPCVDKVISSGIKKIYISIQDPDKRVSGKGIKLLKQAGIKVH 129

Query: 128 R-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             + + E      A++ R + ++S   LK A+S D  IG+    S  IT   S++ VH  
Sbjct: 130 LGLCKKESLELNKAFIYRTITEKSFGVLKWAMSIDGRIGLKNGKSKWITNKDSRSLVHSF 189

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R + DAI++G  T+  D+P LT R  GL+   P+R++      L   S +        ++
Sbjct: 190 RTEFDAIIIGGNTLRQDNPLLTTR--GLKNPEPLRVVFTKTLDLPPKSNLWDCDEAKTLV 247

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           I   +      L    + + +      + + +  +L  RG   +L E G  +A S + S 
Sbjct: 248 IYDSSTANEKFLTNIPQCVEVEKVSSDNPELISKLLAKRGCNKVLWECGPKLATSAVKSD 307

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362
            ++ II + +  ++G     +PL +   E+    ++     SD  +  IG ++C++
Sbjct: 308 CINEIISFIAPKILGGQTNMNPLGDFQFEEMHEIIKL----SDSQVSLIGNDICVK 359


>gi|319763925|ref|YP_004127862.1| riboflavin biosynthesis protein ribd [Alicycliphilus denitrificans
           BC]
 gi|317118486|gb|ADV00975.1| riboflavin biosynthesis protein RibD [Alicycliphilus denitrificans
           BC]
          Length = 370

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 123/365 (33%), Positives = 185/365 (50%), Gaps = 20/365 (5%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA--- 63
           A F++ AL  +   + L++ NP V C+I    G V+G+G T   G PHAEV AL +A   
Sbjct: 5   APFITQALGLAAQALFLSNPNPRVGCVIASGAGAVLGQGFTQQAGGPHAEVVALRDAAAS 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G + RGATAYVTLEPC+H GR+ PC   +I+ GI RVV  ++DP+  V G+G   L   G
Sbjct: 65  GNDVRGATAYVTLEPCAHQGRTGPCCDALIQAGIGRVVASIEDPNPLVGGQGFARLRAAG 124

Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V     ++    L+  + +R V     + +K A S D +  +A   S  IT   ++  
Sbjct: 125 IDVQVGPGAQQSRELNIGFFSRMVRGMPWVRMKAAASLDGVTALANGTSQWITAPAARAD 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H  RA++ A+L GIGTVL DDP L  R        P  +++D   +  L +++      
Sbjct: 185 GHAWRARACAVLTGIGTVLEDDPLLNVR-EVATPRQPHLVVVDSRLQTPLGARLFDVPGR 243

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYC-DCR---DLKKLLTILVGRGVTSLLVEGGAAV 298
             V I   +  P  A A R +   +I   + R   DL  +L  L   GV  L +E G  +
Sbjct: 244 R-VFIYAADGPPDRAQALRARGATVIVLPNARGKVDLPAMLRDLGANGVNELHLEAGHKL 302

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG--GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
             SF+   LVD ++LY + +++G G  G+ S    G L+     VR ++ G    ++ +G
Sbjct: 303 NGSFLREGLVDELLLYLAPLLLGSGAHGLAS---WGPLQALADGVRMEFHG----MQQLG 355

Query: 357 KNLCL 361
            +L L
Sbjct: 356 PDLRL 360


>gi|330823811|ref|YP_004387114.1| riboflavin biosynthesis protein RibD [Alicycliphilus denitrificans
           K601]
 gi|329309183|gb|AEB83598.1| riboflavin biosynthesis protein RibD [Alicycliphilus denitrificans
           K601]
          Length = 370

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 123/365 (33%), Positives = 185/365 (50%), Gaps = 20/365 (5%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA--- 63
           A F++ AL  +   + L++ NP V C+I    G V+G+G T   G PHAEV AL +A   
Sbjct: 5   APFITQALGLAAQALFLSNPNPRVGCVIASGAGAVLGQGFTQQAGGPHAEVVALRDAAAS 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G + RGATAYVTLEPC+H GR+ PC   +I+ GI RVV  ++DP+  V G+G   L   G
Sbjct: 65  GNDVRGATAYVTLEPCAHQGRTGPCCDALIQAGIGRVVASIEDPNPLVGGQGFARLRAAG 124

Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V     ++    L+  + +R V     + +K A S D +  +A   S  IT   ++  
Sbjct: 125 IDVQVGPGAQQSRELNIGFFSRMVRGMPWVRMKAAASLDGVTALANGTSQWITAPAARAD 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H  RA++ A+L GIGTVL DDP L  R        P  +++D   +  L +++      
Sbjct: 185 GHAWRARACAVLTGIGTVLEDDPLLNVR-EVATPRQPHLVVVDSRLQTPLGARLFDVPGR 243

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYC-DCR---DLKKLLTILVGRGVTSLLVEGGAAV 298
             V I   +  P  A A R +   +I   + R   DL  +L  L   GV  L +E G  +
Sbjct: 244 R-VFIYAADGHPDRAQALRARGATVIVLPNARGKVDLPAMLRDLGANGVNELHLEAGHKL 302

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG--GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
             SF+   LVD ++LY + +++G G  G+ S    G L+     VR ++ G    ++ +G
Sbjct: 303 NGSFLREGLVDELLLYLAPLLLGSGAHGLAS---WGPLQALADGVRMEFHG----MQQLG 355

Query: 357 KNLCL 361
            +L L
Sbjct: 356 PDLRL 360


>gi|295698401|ref|YP_003603056.1| riboflavin biosynthesis protein RibD [Candidatus Riesia
           pediculicola USDA]
 gi|291157057|gb|ADD79502.1| riboflavin biosynthesis protein RibD [Candidatus Riesia
           pediculicola USDA]
          Length = 373

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 165/334 (49%), Gaps = 40/334 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D +FMS A+  ++     TS NP+V C+IV++  ++G    +  G  HAEV A+++AG  
Sbjct: 5   DRQFMSRAIFLAKKGKFTTSPNPNVGCVIVQNNRIVGESYHSKTGESHAEVLAMKKAGHF 64

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            +GAT YVTLEPC+HYG +PPC   +I   I ++ V + DP+ +VSG+ L  L + G+ +
Sbjct: 65  LKGATVYVTLEPCNHYGLTPPCVDELINAKISKIFVSMTDPNPKVSGKSLIKLKKSGVQV 124

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS-QDNMIGMAGCGSVPITGFISKNQVH 184
           +  +++ E +     ++ R  +   +IT+K+A S    +I +    +  I+ + S+  V 
Sbjct: 125 ISGLLKDESEKINLGFIKRMKQGLPYITIKMATSINSKVIPINFEKNKWISSYKSRQDVQ 184

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLSLD 233
            +RAQS A+L    T+++DD  L  R N   +             P+RI++D   K+  +
Sbjct: 185 EIRAQSSAVLTTGSTIVSDDSRLNVRWNDFSDELKNIYPEKEIRQPVRIVIDTKNKVHEN 244

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFR--------KKNINIIYCDCR-----DLKKLLT 280
            KI+ T              P     FR        KKN+             DL   + 
Sbjct: 245 HKIVNT--------------PGECWLFRSQFSKKRWKKNVKEFSTKLDSEGRIDLIYTMK 290

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
            +  R + S+L+E G   A S ++  L D IILY
Sbjct: 291 QIARRKINSILIESGPTFASSLLSLNLFDQIILY 324


>gi|327405290|ref|YP_004346128.1| riboflavin biosynthesis protein RibD [Fluviicola taffensis DSM
           16823]
 gi|327320798|gb|AEA45290.1| riboflavin biosynthesis protein RibD [Fluviicola taffensis DSM
           16823]
          Length = 347

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/345 (33%), Positives = 172/345 (49%), Gaps = 43/345 (12%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D ++M  AL+ ++      + NP V  +IV +  +IG G     G  HAEV A+    
Sbjct: 2   NLDEKYMLRALQLAKSGGISVAPNPLVGAVIVHNQQIIGEGYHQKYGEAHAEVNAVNSVK 61

Query: 65  EEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           +++    +T YVTLEPCSH+G++PPCA  ++    +RVV+   DP   V+GRG++ L   
Sbjct: 62  DKSLLSESTIYVTLEPCSHFGKTPPCADLLVHSQFKRVVIAQIDPFSEVAGRGIEKLKNA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAV----------SQDNMIGMAGCGS 171
           GI VD  ++ESE K     ++T   +KR  ITLK A           SQD  IG+    S
Sbjct: 122 GIQVDCGILESEAKELNKRFITFHTKKRPFITLKWAQTKDGFIDRDRSQDKEIGINWI-S 180

Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231
            P T  I+    H +R+   AILVG  T+  D+P LT R+      +P+RII+DP+ K  
Sbjct: 181 QPETQVIT----HQMRSTEQAILVGWKTIQNDNPSLTTRV--FTGPNPIRIIIDPNLKAP 234

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY---CDCRDLKKLLTILVGRGVT 288
            ++ I    L   V   TE           +K IN I     +  D K +L  L    + 
Sbjct: 235 KNATIFTDGLKTVVFNKTE-----------EKTINSIQYVRLESIDSKSILRKLHELQIN 283

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPL 329
           S+++EGGA     FI+S   D  +     I++GE     GI +P+
Sbjct: 284 SVIIEGGAFTLTQFIDSSNWDEAL-----IIVGENQFKTGIKAPI 323


>gi|299822452|ref|ZP_07054338.1| riboflavin biosynthesis protein RibD [Listeria grayi DSM 20601]
 gi|299815981|gb|EFI83219.1| riboflavin biosynthesis protein RibD [Listeria grayi DSM 20601]
          Length = 394

 Score =  157 bits (396), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 110/323 (34%), Positives = 171/323 (52%), Gaps = 10/323 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG--EE 66
           ++M+ A++ +R   G T  NP V  +IVK   +IG+G  A  G  HAEV A +     EE
Sbjct: 28  KWMAIAIKEARKGRGKTYKNPLVGAVIVKADRLIGKGYHASYGDVHAEVNAFQNVSNPEE 87

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            + ++ YVTLEPC+H+G+ PPC + I+E GI  V V   D +  V G+G+ +L   GI V
Sbjct: 88  TKHSSIYVTLEPCAHHGKQPPCCEKIVEMGIEHVYVAQLDSNPLVRGKGVAYLEAHGIKV 147

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E +    A+      +R  +TLK AV+ D     +      +T   +   V  
Sbjct: 148 TIGVLEKEAEQLNPAFHFFHRHRRPLVTLKQAVTIDGKTNSSAASRTYLTDEKTSEDVQQ 207

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-IKTALLAP 244
           LR  S AILVG  TVL DDP LT R N +  + P+RI+LD   + ++D K  +    LA 
Sbjct: 208 LRMGSQAILVGSETVLIDDPALTIRSN-VVPYPPVRIVLDRRGR-TVDQKFQLWRDGLAE 265

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
             + T N +P +  A   +++ +        +K++ IL   G+ SL +EGGAA+  +F+ 
Sbjct: 266 TWLFTGN-EPDINFA---EHVRVFVDPDWTTEKVIRILAEEGIQSLCIEGGAAIHDAFLA 321

Query: 305 SRLVDSIILYRSQIVIGEGGIPS 327
           +  VD I+ Y +  ++G    P+
Sbjct: 322 AGKVDRIVSYVAPYLLGGNARPA 344


>gi|189219671|ref|YP_001940312.1| Pyrimidine deaminase and pyrimidine reductase [Methylacidiphilum
           infernorum V4]
 gi|189186529|gb|ACD83714.1| Pyrimidine deaminase and pyrimidine reductase [Methylacidiphilum
           infernorum V4]
          Length = 376

 Score =  157 bits (396), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 109/342 (31%), Positives = 170/342 (49%), Gaps = 30/342 (8%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D  +M  AL+++    GLTS NP+V  ++VK+G +IGRG     G  HAE++A+E+A
Sbjct: 23  SPEDRYWMKEALKWALLGEGLTSPNPAVGAVLVKEGTLIGRGYHRKAGQAHAEIEAIEDA 82

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              GE   G+T YVTLEPCS +G++PPC + I++  I RVV    DP+ R   R ++ L 
Sbjct: 83  KKRGESVAGSTLYVTLEPCSSWGKTPPCTERIVKEKISRVVASSPDPNPRNKPRAVELLP 142

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP-ITGFIS 179
             G+     +  E       +  R +  +  +  KIA++ D  +  AG G    I+G  +
Sbjct: 143 SLGVDFSWEILEEALFLNRGFYHRILTGKPWVIGKIAMAIDGSLS-AGVGEERWISGIAA 201

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H LR  +DAIL+G  T   D+P LT RL            +DP  K+     I+  
Sbjct: 202 RTVAHRLRMIADAILIGAQTARTDNPRLTIRL------------VDPKGKIQPWRVIVSR 249

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           +   P  +    D      AF+++ +  +       +++L  L  R V  LLVEGGA V 
Sbjct: 250 SGNLPGDLFLFTD------AFKERTLLFVKMPW---ERVLGELGSRDVGILLVEGGAEVL 300

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341
           H  I    +  +  + S ++IG+     PLE+   + +F+ V
Sbjct: 301 HQLIKEGWIQEVSFFLSPLIIGK----QPLEDSSTDASFLSV 338


>gi|293603326|ref|ZP_06685754.1| riboflavin biosynthesis protein RibD [Achromobacter piechaudii ATCC
           43553]
 gi|292818236|gb|EFF77289.1| riboflavin biosynthesis protein RibD [Achromobacter piechaudii ATCC
           43553]
          Length = 383

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 105/318 (33%), Positives = 160/318 (50%), Gaps = 15/318 (4%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P  S D  +M  AL  +   +  T+ NP V C+IV+DG ++G G T   G PHAE++AL 
Sbjct: 4   PSESDDIFWMRRALALAESVLYTTAPNPRVGCVIVRDGRMLGEGATQPPGGPHAEIRALR 63

Query: 62  EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           +A    E   GAT YVTLEPCSH+GR+PPC   ++     RVVV + DP+  V+G+GL  
Sbjct: 64  DAESRQEAVEGATLYVTLEPCSHFGRTPPCVDAVLAARPARVVVAIGDPNPLVNGQGLAR 123

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L   GI +   + E E       +++R       + +K+A S D    +    S  ITG 
Sbjct: 124 LRAAGIQVTTGVCEQEALALNAGFISRMSRGLPWVWMKMAASLDGRSALHNGMSQWITGP 183

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKI 236
            ++   H  RA+S  +L G+GT+L DDP L  R  G+Q    P + ++D  F +  D+++
Sbjct: 184 EARADGHHWRARSCVVLTGMGTILKDDPLLNVR--GVQTPRQPRKAVVDGLFVIPEDARL 241

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLL 291
              A    VI+ T  +D   A    +KN  ++Y         DL  ++          + 
Sbjct: 242 FDGAQ---VIVFTAREDAEKAARLAEKNARVVYMPGSAPGRVDLAAMMRWFAEAEFNEVH 298

Query: 292 VEGGAAVAHSFINSRLVD 309
           VE GA ++ + + +  VD
Sbjct: 299 VEAGAGLSGALVAAGCVD 316


>gi|264677184|ref|YP_003277090.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni CNB-2]
 gi|262207696|gb|ACY31794.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni CNB-2]
          Length = 369

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 108/325 (33%), Positives = 166/325 (51%), Gaps = 8/325 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAYGGCPHAEVQALEEA--- 63
           A FM+ AL  +   + L+S NP V C+IV     +IG+G T   G PHAEV AL +A   
Sbjct: 5   AHFMNKALEQAAQALFLSSPNPRVGCVIVDASERIIGQGFTQQTGGPHAEVMALRDAAAK 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G + RGATAYVTLEPCSH+GR+ PC   +I  GI +VV  + DP+ +V+G+G + L   G
Sbjct: 65  GNDVRGATAYVTLEPCSHHGRTGPCCDALIAAGIGKVVGALTDPNPQVAGQGFERLRAAG 124

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + V+     +E +     + +R +     + +K A S D +  +    S  IT   ++  
Sbjct: 125 VDVEIGPGGAESRELNIGFFSRMIRGIPWVRMKAASSLDGITALHNGQSQWITSAAARAD 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H  RA++  IL GIGTVL D+P +  R +      P   ++D    + LD+ ++K    
Sbjct: 185 GHAWRARACTILTGIGTVLEDNPRMNVR-DVDTPRQPRIAVVDSKLDIPLDAHVLKAPSG 243

Query: 243 APVIIVTENDDPVLAL-AFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAH 300
             +   +     + AL A     I++     + DL  +L  L  RG   L VE G  +  
Sbjct: 244 CLIYTCSTKQSRIEALQALGATVIDMPNAAGKVDLAAMLRDLAQRGTNELHVEAGFKLNG 303

Query: 301 SFINSRLVDSIILYRSQIVIGEGGI 325
           S I   LVD ++ Y++  ++G G +
Sbjct: 304 SLIREGLVDELLFYQAPKLLGTGAM 328


>gi|6226765|sp|O24750|RIBD_CORAM RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
           RecName:
           Full=Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase; Includes: RecName:
           Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|21914864|dbj|BAA20053.1| ribG [Corynebacterium ammoniagenes]
          Length = 337

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 113/310 (36%), Positives = 156/310 (50%), Gaps = 33/310 (10%)

Query: 20  WHV-GLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLE 77
           W V G TS NP V  +I+   G ++G G T   G  HAEVQAL +A  +  GATA VTLE
Sbjct: 27  WEVRGTTSPNPPVGAVIISTSGEIVGTGATQPVGGVHAEVQALADAAGKTEGATAVVTLE 86

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG-KI 136
           PC H GR+ PC Q +IE GI+ V+    DP+    G G Q L   GI V ++   EG   
Sbjct: 87  PCRHTGRTGPCTQALIEAGIKDVLFLHSDPNPSAGG-GEQVLVDAGINVVQLPSPEGVPD 145

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
            L  +L     +R H+TLK A + D     A   S  ITG ++++ VH  R   DAI++G
Sbjct: 146 ALIPWLKSVQLRRPHVTLKFAQTIDGFTAAADGTSQWITGEMARDYVHADREHRDAIIIG 205

Query: 197 IGTVLADDPELTCRL-NGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
            GT L D+P LT R  +G Q EH P R++        +  + I  A  A           
Sbjct: 206 TGTALIDNPSLTARYPDGTQREHQPRRVV--------IGRRNIADAGDA----------- 246

Query: 255 VLALAFRKKNINII-YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
                    N+N + +     + + L  L   G   +LVEGGA +A  F N  LVD + +
Sbjct: 247 -------ASNLNRLGFEQYATIDEALAELYATGARDVLVEGGAGLASGFANQGLVDWLQV 299

Query: 314 YRSQIVIGEG 323
           Y++ +++GEG
Sbjct: 300 YQAPLLLGEG 309


>gi|134098691|ref|YP_001104352.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133911314|emb|CAM01427.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 345

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 107/307 (34%), Positives = 148/307 (48%), Gaps = 33/307 (10%)

Query: 23  GLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G TS NP V C+++     +     T   G PHAEV AL EAGE ARG TA VTLEPCSH
Sbjct: 26  GTTSPNPPVGCVVLDAAGAVAGIGATRPPGGPHAEVVALREAGERARGGTAVVTLEPCSH 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR--MMESEGKIFLH 139
            GR+PPC   ++  G+ RVV  V DP + V+  G   L   G+ V    + E      L 
Sbjct: 86  TGRTPPCTDALLAAGVARVVHAVSDP-MPVAAGGADILRAAGVEVHSGLLAEEAESGPLR 144

Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199
           A+L      R H+T K A + D     A   S  I+   ++ +VH LR + DA++ G GT
Sbjct: 145 AWLHFARTGRPHVTWKYAATLDGRSAAADGTSKWISSPEARAEVHELRRRMDAVVAGTGT 204

Query: 200 VLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
           VLADDP+LT R    GL EH P+R+++                           + PV A
Sbjct: 205 VLADDPQLTARTPEGGLHEHQPLRVVV--------------------------GNRPVPA 238

Query: 258 LA-FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
            A         +     D   +L  L GRG   +L+EGG  +A +F  +  +D ++ Y +
Sbjct: 239 GARVLDDTAETLLLPASDPDTVLAELAGRGAVDVLLEGGPVLAGAFAAAGRIDRVLGYIA 298

Query: 317 QIVIGEG 323
             ++G G
Sbjct: 299 PALLGSG 305


>gi|291003622|ref|ZP_06561595.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 348

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 107/307 (34%), Positives = 148/307 (48%), Gaps = 33/307 (10%)

Query: 23  GLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G TS NP V C+++     +     T   G PHAEV AL EAGE ARG TA VTLEPCSH
Sbjct: 29  GTTSPNPPVGCVVLDAAGAVAGIGATRPPGGPHAEVVALREAGERARGGTAVVTLEPCSH 88

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR--MMESEGKIFLH 139
            GR+PPC   ++  G+ RVV  V DP + V+  G   L   G+ V    + E      L 
Sbjct: 89  TGRTPPCTDALLAAGVARVVHAVSDP-MPVAAGGADILRAAGVEVHSGLLAEEAESGPLR 147

Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199
           A+L      R H+T K A + D     A   S  I+   ++ +VH LR + DA++ G GT
Sbjct: 148 AWLHFARTGRPHVTWKYAATLDGRSAAADGTSKWISSPEARAEVHELRRRMDAVVAGTGT 207

Query: 200 VLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
           VLADDP+LT R    GL EH P+R+++                           + PV A
Sbjct: 208 VLADDPQLTARTPEGGLHEHQPLRVVV--------------------------GNRPVPA 241

Query: 258 LA-FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
            A         +     D   +L  L GRG   +L+EGG  +A +F  +  +D ++ Y +
Sbjct: 242 GARVLDDTAETLLLPASDPDTVLAELAGRGAVDVLLEGGPVLAGAFAAAGRIDRVLGYIA 301

Query: 317 QIVIGEG 323
             ++G G
Sbjct: 302 PALLGSG 308


>gi|29349136|ref|NP_812639.1| riboflavin biosynthesis protein ribD [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29341044|gb|AAO78833.1| riboflavin biosynthesis protein ribD [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 339

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 107/323 (33%), Positives = 167/323 (51%), Gaps = 20/323 (6%)

Query: 26  STNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--RGATAYVTLEPCSHYG 83
           + NP V  +IV DG++IG G     G  HAEV A+    +++    +T YV+LEPCSHYG
Sbjct: 16  APNPMVGAVIVCDGLIIGEGYHIRCGEAHAEVNAIRSVKDKSLLSRSTIYVSLEPCSHYG 75

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYL 142
           ++PPCA  IIE  I R+V+   DP  +V+GRG+Q L   G  V   ++E E +  +  ++
Sbjct: 76  KTPPCADLIIEKQIPRIVIGCQDPFSQVAGRGIQKLRDAGREVTVGVLEKECRYLIRRFI 135

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQVHLLRAQSDAILVGIGTV 200
           T     R  ITLK A S D+ I +      P+  +  ++   VH  RA++DAI+VG  T 
Sbjct: 136 TFNTLHRPFITLKWAESADHFIDVERTDGNPVVLSSPLTSMLVHKKRAETDAIMVGRRTA 195

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
           L D+P LT R       +P+RI+LD    L    ++    +  P I+ T    P      
Sbjct: 196 LLDNPSLTVR--NWYGRNPVRIVLDRALSLPHSLRLFDGEV--PTIVFTAEKHP------ 245

Query: 261 RKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
            KKN+     +     L +++ +L  + + SLLVEGG+ +  SFI++ L D + + +   
Sbjct: 246 DKKNVTYRTIEFTQDILPQIMKVLYQQKIQSLLVEGGSQLLQSFIDAELWDEVYIEKCPC 305

Query: 319 VIGEGGIPSPLEEGY---LEKNF 338
            +  G     + + +    EK+F
Sbjct: 306 KLNSGVKAPEISDNFSYSTEKHF 328


>gi|298249165|ref|ZP_06972969.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM
           44963]
 gi|297547169|gb|EFH81036.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM
           44963]
          Length = 383

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 115/336 (34%), Positives = 175/336 (52%), Gaps = 17/336 (5%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR- 68
           FM  A+  +R   G TS  P V  ++V++  VIGRG T+    PHAE+ AL EA   A  
Sbjct: 6   FMQKAIACARSIEGRTSPRPPVGAVLVRENQVIGRGATSPPYGPHAEIHALREAETTAAV 65

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GA  Y TLEPC     +PPC   II  GI+RV++   DP+ +VSGRG+  L + GI ++ 
Sbjct: 66  GADLYTTLEPCCITVHTPPCTAAIIAAGIKRVIIGSLDPNPQVSGRGVAQLREAGIEVIT 125

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + E E    +  + T   + R ++T K A++ D  +      +  I+G  ++  VH LR
Sbjct: 126 TIAEPETAALIRPFATYITQGRPYVTAKWAMTLDGKLASHTGDASWISGSAARTWVHQLR 185

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSP-------MRIILDPHFKLSLDSKIIKTA 240
            + DAI++G+GT  ADDP LT RL   Q   P       +RI++    +L+   ++ +  
Sbjct: 186 DRVDAIMIGVGTAHADDPRLTIRLTEEQRVHPRTQRPNHLRIVVSSRGELNAQLQLFQKQ 245

Query: 241 LLAP--VIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVE 293
            LAP   +IV+E   P      R++ I +I          DL   L IL  R +  LL+E
Sbjct: 246 -LAPGTCVIVSETSAPDQRERLRERGIQVIEVPADQTGRVDLMAALHILGQREIMHLLLE 304

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
           GG+++  S    +L+D +  + +  +IG  G PSP+
Sbjct: 305 GGSSLLGSAFEHKLIDHVAAFVAPKLIGGEGAPSPI 340


>gi|227499806|ref|ZP_03929901.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Anaerococcus
           tetradius ATCC 35098]
 gi|227218110|gb|EEI83378.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Anaerococcus
           tetradius ATCC 35098]
          Length = 357

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 104/316 (32%), Positives = 155/316 (49%), Gaps = 15/316 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
            M      +R   G   TNP V  ++ KDG VIGRG        HAE+   +     A G
Sbjct: 6   LMRECFSLARKGRGKVLTNPMVGAIVYKDGEVIGRGYHKSFYDDHAEIDCFKNLKGSAEG 65

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           AT  V LEPCSH+G+ PPC   +I   I+RVV+   D + +V   G+  L   GI ++  
Sbjct: 66  ATLIVNLEPCSHFGKHPPCVDEVIRRKIKRVVISNIDTNPKVD--GISKLKACGIEVISG 123

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++E EGK     +      KR  + LK A S D  I      S  I+   S+  VH LR 
Sbjct: 124 VLEEEGKKLNEKFFFNMSHKRPLVALKYAQSLDGKIATGKFDSKWISNEKSREFVHQLRN 183

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
             DAI+VG  T+L D+P LT R++  +   P+RII+     L+ D ++ K        I 
Sbjct: 184 DYDAIIVGKNTLLTDNPRLTSRID--KGIDPVRIIVSDSLDLNPDLEVFKENSDGKTYIA 241

Query: 249 TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           + +D  +      K +  +I C  +    DL+ LL  L  + + S+LVEGG+ + +SF+ 
Sbjct: 242 SSSDKDI------KLDSGLIRCKSKNGHIDLEDLLKKLYEKNIGSVLVEGGSVLNNSFLE 295

Query: 305 SRLVDSIILYRSQIVI 320
             L+D I  + + I++
Sbjct: 296 EDLIDKIYQFMAPIIV 311


>gi|333028400|ref|ZP_08456464.1| putative riboflavin/cytosine deaminase [Streptomyces sp. Tu6071]
 gi|332748252|gb|EGJ78693.1| putative riboflavin/cytosine deaminase [Streptomyces sp. Tu6071]
          Length = 372

 Score =  156 bits (395), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 120/346 (34%), Positives = 176/346 (50%), Gaps = 11/346 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
            ++ +   M  A+  +   +G T  NP V C+++   G V GRG     G PHAE+ AL 
Sbjct: 10  ATAAETAAMREAIALAARGLGRTRPNPVVGCVVLDASGEVAGRGWHQRAGGPHAEIHALR 69

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AGE ARG TA VTLEPC H GR+ PC++ +IE G+RRVV  V DP  + +G G   L  
Sbjct: 70  AAGERARGGTALVTLEPCDHTGRTGPCSRALIEAGVRRVVHAVADPTDQATG-GADTLRA 128

Query: 122 KGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            G+ V+  ++E E      A+LT     R H+T K A S D     A   S  IT   ++
Sbjct: 129 AGVDVEHGLLEREAADVNAAWLTAARLGRPHVTWKYAASLDGRTAAADGTSRWITSPEAR 188

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPH-FKLSLDSKIIK 238
             VH LRA  DA+LVG GT   DDP L  R + G  +  P+R++LD     +   ++++ 
Sbjct: 189 ADVHRLRATCDAVLVGSGTARTDDPHLAVRGIPGAPQ--PLRVVLDTEGTAVRGGARVLD 246

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
            A  AP ++   +D P  A       +        DL  LL  L  R V  +L+EGGA +
Sbjct: 247 DA--APTLVALADDAPAPAHGAELLRLPRAARGGLDLTALLAALYARDVRGVLLEGGARL 304

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           A +F+ +   D ++ Y + +++G G  P+ L +  +      +R D
Sbjct: 305 AGAFVAAGYTDRVVGYLAPVLLGAG--PAALTDAGIPTLTAALRLD 348


>gi|265765179|ref|ZP_06093454.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 2_1_16]
 gi|263254563|gb|EEZ25997.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 2_1_16]
          Length = 340

 Score =  156 bits (395), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 176/342 (51%), Gaps = 34/342 (9%)

Query: 26  STNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--RGATAYVTLEPCSHYG 83
           S NP V  +IV +G +IG G     G  HAEV A+    + +  + +T YV+LEPCSH+G
Sbjct: 16  SPNPMVGAVIVCEGQIIGEGYHIRCGEAHAEVNAIRSVKDPSLLKHSTIYVSLEPCSHHG 75

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYL 142
           ++PPCA  IIE  I R+V+   DP  +V+G+G+Q L   G  ++  ++E+E +  +  ++
Sbjct: 76  KTPPCADLIIEKQIPRIVIGCQDPFSKVAGKGIQKLRDAGCEVIVGVLETECRELIRKFI 135

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQVHLLRAQSDAILVGIGTV 200
           T     R +I LK A S D  I +      P+  +  ++   VH  RA+SDAI+VG  T 
Sbjct: 136 TFHTLHRPYIVLKWAESADGFIDLERTEGQPVILSTPLTSMLVHKKRAESDAIMVGTRTA 195

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
           L D+P LT R      H+P+RI++D +  L   S +              +D+ V  L F
Sbjct: 196 LLDNPALTVR--NWYGHNPVRIVMDRNHSLPQTSHL--------------SDNSVSTLVF 239

Query: 261 R------KKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
                  K+N+  I  + +   L ++L+ L  R + SL++EGG  +  SFI S + D +I
Sbjct: 240 TEHPRAGKENLEYITLNYQTDILPQILSALYQRNLQSLMIEGGRILLESFIRSGIWDEVI 299

Query: 313 LYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDV 350
           + +S  ++   G+ +P     +    EK+F    R Y   + 
Sbjct: 300 IEKSDKLL-YSGVKAPEISDKISYSEEKHFCTTFRHYLKRNT 340


>gi|254495519|ref|ZP_05108443.1| riboflavin biosynthesis protein RibD [Polaribacter sp. MED152]
 gi|85819875|gb|EAQ41032.1| riboflavin biosynthesis protein RibD [Polaribacter sp. MED152]
          Length = 337

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 100/328 (30%), Positives = 176/328 (53%), Gaps = 16/328 (4%)

Query: 15  LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--RGATA 72
           ++ ++  +G+T  NPSV  +IV    +I  G T+  G  HAEV A+    +++  + AT 
Sbjct: 1   MQIAKNGIGVTRPNPSVGAVIVHQNKIIAEGFTSNYGGNHAEVNAIIAVKDKSLLKEATI 60

Query: 73  YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMME 131
           YVTLEPCSHYG++PPCA  II+  +++VV+   D +  V+G+G++ + + GI V   ++E
Sbjct: 61  YVTLEPCSHYGKTPPCADLIIKHKLKKVVIGTLDTNSLVAGKGVERIEKAGIDVKVGVLE 120

Query: 132 SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG---MAGCGSVPITGFISKNQVHLLRA 188
            + K     + T Q +KR ++ LK A SQD  I          + I+   S+  VH LR+
Sbjct: 121 EKCKKHHKRFFTSQNKKRPYVILKWATSQDGFIAPLKKEVQKPIWISNQYSQQLVHKLRS 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           +  AILVG  T +AD+P+L  R      ++P+R++LD   ++  +  I   ++    I +
Sbjct: 181 KEHAILVGTNTAIADNPKLNVR--SWSGNNPIRVVLDKSLRIENNLNIYDNSV--KTIFI 236

Query: 249 TENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           TE +   +     + NI     D +    +++L +L    + S+++EGG     +FI+  
Sbjct: 237 TEKE---VHNCGDESNIIFEKIDFKQKIAEQVLAVLQKHNIQSVIIEGGTQTLQTFIDEN 293

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYL 334
           L D   ++   + + + GI +P+  G +
Sbjct: 294 LWDEAFVFTGDVCLND-GIKAPVFGGQI 320


>gi|72382670|ref|YP_292025.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. NATL2A]
 gi|72002520|gb|AAZ58322.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. NATL2A]
          Length = 364

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 107/357 (29%), Positives = 180/357 (50%), Gaps = 18/357 (5%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +M  +++ +    G TS NP V  +++  +G ++G G  +  G PHAE++AL +AG++A 
Sbjct: 14  WMRRSIQLALLAEGRTSPNPLVGSIVLDSNGRLVGEGFHSGAGNPHAEIEALAQAGKKAL 73

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
             T  VTLEPC H G +PPC + II  G+++VVV + DPD RVSG G+  L   G+ +++
Sbjct: 74  DGTIVVTLEPCCHQGLTPPCTEAIIRAGLKKVVVGMVDPDPRVSGNGISRLKDSGLEVIE 133

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++  E +     +  R    R    LK A+S D  IG+    S  IT   +++ VH +R
Sbjct: 134 GVLSQECESINREFSFRVRHGRPWGILKWAMSLDGKIGLPNGCSKWITDIPARHSVHRIR 193

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           ++ DA++VG GTV AD+P LT R     +  P+R++      L   +K+  T +   +I 
Sbjct: 194 SKCDAVIVGGGTVRADNPLLTSREK--LDFEPLRVVFSKTLNLPQSAKLWDTKIARTIIA 251

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
                D     +        +  +  +  +LL+ L  +G   +L E G  +A S I +  
Sbjct: 252 YGPEGDESF-FSDLPNGPEKLRLNSNNPSELLSSLAKKGCNKILWECGPQLATSAIEANC 310

Query: 308 VDSIILYRSQIVIGEGGIPSPLEE-GY--------LEKNFMCVRRDYFGSDVCLEYI 355
           V  ++++ +  ++G     SPL   G+        L+ +F+    D  G D+C   I
Sbjct: 311 VQELVVFVAPKLLGGMSSMSPLNNFGFESISSSYKLQHSFL----DRKGEDICWRLI 363


>gi|31335381|emb|CAD89884.1| riboflavin biosynthesis protein ribD [Bacillus cereus]
          Length = 209

 Score =  156 bits (394), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 85/206 (41%), Positives = 121/206 (58%), Gaps = 1/206 (0%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 3   DQXYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YVTLEPCSH+G++PPC + +I+  ++RVV+   D +  VSG G + L + GI V
Sbjct: 63  AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKKRLEEAGIEV 122

Query: 127 DRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +  E  + L+ Y    ++ KR  +T+K A+S D         S  IT   ++  VH 
Sbjct: 123 TTGVLEEEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITSEDARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL 211
            R   DAILVG+ TV+AD+P LT R+
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRI 208


>gi|253564134|ref|ZP_04841591.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_2_5]
 gi|251947910|gb|EES88192.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_2_5]
 gi|301161570|emb|CBW21110.1| putative riboflavin biosynthesis protein [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Bacteroides fragilis 638R]
          Length = 340

 Score =  155 bits (393), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 175/342 (51%), Gaps = 34/342 (9%)

Query: 26  STNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--RGATAYVTLEPCSHYG 83
           S NP V  +IV +G +IG G     G  HAEV A+    + +  + +T YV+LEPCSH+G
Sbjct: 16  SPNPMVGAVIVCEGQIIGEGYHIRCGEAHAEVNAIRSVKDPSLLKHSTIYVSLEPCSHHG 75

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYL 142
           ++PPCA  IIE  I R+V+   DP  +V+G+G+Q L   G  ++  ++E E +  +  ++
Sbjct: 76  KTPPCADLIIEKQIPRIVIGCQDPFSKVAGKGIQKLRDAGCEVIVGVLEPECRELIRKFI 135

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQVHLLRAQSDAILVGIGTV 200
           T     R +I LK A S D  I +      P+  +  ++   VH  RA+SDAI+VG  T 
Sbjct: 136 TFHTLHRPYIVLKWAESADGFIDLERTEGQPVILSTPLTSMLVHKKRAESDAIMVGTRTA 195

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
           L D+P LT R      H+P+RI++D +  L   S +              +D+ V  L F
Sbjct: 196 LLDNPALTVR--NWYGHNPVRIVMDRNHSLPQTSHL--------------SDNSVSTLVF 239

Query: 261 R------KKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
                  K+N+  I  + +   L ++L+ L  R + SL+VEGG  +  SFI S + D +I
Sbjct: 240 TEHPRSGKENLEYITLNYQTDILPQILSALYQRNLQSLMVEGGRILLESFIRSGIWDEVI 299

Query: 313 LYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDV 350
           + +S  ++   G+ +P     +    EK+F    R Y   + 
Sbjct: 300 IEKSDKLL-YSGVKAPEISDKISYSEEKHFCTTFRHYLKRNT 340


>gi|260578782|ref|ZP_05846689.1| riboflavin biosynthesis protein RibD [Corynebacterium jeikeium ATCC
           43734]
 gi|258603080|gb|EEW16350.1| riboflavin biosynthesis protein RibD [Corynebacterium jeikeium ATCC
           43734]
          Length = 354

 Score =  155 bits (393), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 117/351 (33%), Positives = 168/351 (47%), Gaps = 50/351 (14%)

Query: 24  LTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
           L S NP V  +I    G V+GRG T   G  HAEV AL++AGE+ARG  A VTLEPC+H 
Sbjct: 19  LASPNPPVGAVIEDSSGQVVGRGFTQAPGGAHAEVVALQQAGEQARGGRAIVTLEPCNHT 78

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV------------DRMM 130
           GR+ PCA+ +I  GIRRV     D +    G G   L   G+ V            +  +
Sbjct: 79  GRTGPCAEALIRAGIRRVDFLFADLNPAAEG-GAATLRAAGVEVHGPYLPLPTAGDEAKL 137

Query: 131 ESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            +  K++ +  +L     +R H+ LK+A + D  +      S  ITG  ++  VH  R +
Sbjct: 138 PAWSKMYSVEPWLISMARQRPHVCLKMASTLDGRVAAVDGTSQWITGEPARVAVHEDRTR 197

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQ----EHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            DAILVG GT+ AD+P LT R    Q    E  P+R+I+                     
Sbjct: 198 RDAILVGTGTIAADNPRLTARDAEGQPFAEELQPLRVIMG-------------------- 237

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
                +D PV A  F     + ++   RD+ ++L  L  R V +LLVEGGA +A +F+ +
Sbjct: 238 ----TSDIPVDAAVFAAPG-HALHLPTRDVNEVLAELWKRDVRTLLVEGGAQIAAAFMEA 292

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR------DYFGSDV 350
            +VD +  Y +  V+G G       E  L +    +RR        FG+D+
Sbjct: 293 DVVDEVQFYAAPAVLGAGVASLSDSENILGQTIGDIRRFIPRELQVFGNDL 343


>gi|319900207|ref|YP_004159935.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bacteroides helcogenes P 36-108]
 gi|319415238|gb|ADV42349.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bacteroides helcogenes P 36-108]
          Length = 347

 Score =  155 bits (393), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 107/323 (33%), Positives = 168/323 (52%), Gaps = 19/323 (5%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA- 67
           ++M   ++ ++  +  T+ NP V  +IV DG +IG G   + G  HAEV A+    + + 
Sbjct: 4   KYMRRCIQLAQNGLCNTAPNPMVGAVIVCDGKIIGEGYHVHCGEAHAEVNAIRSVKDPSL 63

Query: 68  -RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG--I 124
            + AT YV+LEPCSHYG++PPCA  IIE  I R+++   DP  +V+GRG+Q L   G  +
Sbjct: 64  LQRATIYVSLEPCSHYGKTPPCADLIIEKQIPRIIIGCMDPFSKVAGRGIQKLKDAGREV 123

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQ 182
           IV  ++E E K  +  ++T    +R +ITLK A S D  I        P+  +   +   
Sbjct: 124 IVG-VLEEECKSLIRRFVTFHTLRRPYITLKWAESADGYIDSYRTNGNPVVLSSPFTSML 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  R +  AI+VG  T   D+P L  R      H P+RI+LD    L  D  +     L
Sbjct: 183 VHKQRTEHSAIMVGTHTAKLDNPRLNVR--HWYGHPPVRIVLDKDRALPTDLHLFDGDTL 240

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAH 300
              ++ TE    +L       N+  +  + +   L +++  L  RG+ SLLVEGG+ +  
Sbjct: 241 T--LVFTETPHDLLP------NVEYLPINYQQDILPQIMEELYTRGLQSLLVEGGSILLQ 292

Query: 301 SFINSRLVDSIILYRSQIVIGEG 323
           SFI++ + D I +  + I++  G
Sbjct: 293 SFIDTGIWDEIFVEEAPILLHSG 315


>gi|221068623|ref|ZP_03544728.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni KF-1]
 gi|220713646|gb|EED69014.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni KF-1]
          Length = 367

 Score =  155 bits (393), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 107/325 (32%), Positives = 162/325 (49%), Gaps = 12/325 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GE 65
           +M+ AL  +   + L+S NP V C+IV     +IG+G T   G PHAEV AL +A   G 
Sbjct: 5   YMNKALEQAAQALFLSSPNPRVGCVIVDASDRIIGQGFTQQAGGPHAEVMALRDAAAKGN 64

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           + RGATAYVTLEPCSH+GR+ PC   +I  GI +VV  + DP+ +V+G+G + L   G+ 
Sbjct: 65  DVRGATAYVTLEPCSHHGRTGPCCDALIAAGIAKVVGALTDPNPQVAGQGFERLRAAGVD 124

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V+     +E +     + +R +     + +K A S D +  +    S  IT   ++   H
Sbjct: 125 VEIGPGAAESRELNIGFFSRMIRGTPWVRMKAASSLDGVTALHNGQSQWITSAAARADGH 184

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             RA++  IL GIGTVL D+P L  R +      P   ++D    +  D+ ++K      
Sbjct: 185 AWRARACTILTGIGTVLEDNPRLNVR-DQPTPRQPRIAVVDSKLDIPPDAHVLKAPSGCF 243

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300
           +   + N   +  L  R     +I         DL  LL  L  RG   L VE G  +  
Sbjct: 244 IYTCSINQSKIEKL--RALGATVIAMPNAAGKVDLAALLRDLAQRGTNELHVEAGFKLNG 301

Query: 301 SFINSRLVDSIILYRSQIVIGEGGI 325
           S I   LVD ++ Y++  ++G G +
Sbjct: 302 SLIREGLVDELLFYQAPKLLGTGAM 326


>gi|212696303|ref|ZP_03304431.1| hypothetical protein ANHYDRO_00840 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676932|gb|EEB36539.1| hypothetical protein ANHYDRO_00840 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 359

 Score =  155 bits (393), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 109/333 (32%), Positives = 159/333 (47%), Gaps = 23/333 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M      ++   G T  NP V  ++VKDG +I  G     G  HAEV       E 
Sbjct: 3   DKYYMKKCFDLAKKARGKTLKNPLVGAVLVKDGKIISTGYHHEYGKVHAEVDCFNNLKEN 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GA  YV LEPCSHYG+  PC   II+  I++V++   D + +V   GL+ L +KGI V
Sbjct: 63  ADGAVLYVNLEPCSHYGKQGPCTLEIIKRNIKKVIISNIDTNPKVD--GLKVLREKGIEV 120

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E EGK     +       R  I LK A + D  I      S  I+   S+  VH 
Sbjct: 121 QTGLLEDEGKKLNEKFFFNIKYNRPLIALKYAQTLDGKISSNTNDSKWISNEFSREYVHR 180

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS---LDSKIIKTALL 242
           LR   DAI+VG  T++ D+P L  R+   +   P+R+I+D + ++     D KI      
Sbjct: 181 LRNDYDAIIVGKNTLIHDNPSLNSRIE--EGVDPVRVIVDTNLEIEKNYKDYKIFNLNSD 238

Query: 243 APVIIVT--ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
               I T  + D+P         ++N+I C  +    DL+ L+  L    + S+LVEGG+
Sbjct: 239 KKTYIATCKDTDNP---------DLNLIKCKMKNNHVDLEDLVNKLYEMNIGSILVEGGS 289

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
            + + F+   LVD I  + S  +IG     SP 
Sbjct: 290 ILNYDFLEEGLVDKIYEFISPKIIGGFNSKSPF 322


>gi|150019955|ref|YP_001305309.1| riboflavin biosynthesis protein RibD [Thermosipho melanesiensis
           BI429]
 gi|149792476|gb|ABR29924.1| riboflavin biosynthesis protein RibD [Thermosipho melanesiensis
           BI429]
          Length = 337

 Score =  155 bits (392), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 108/337 (32%), Positives = 162/337 (48%), Gaps = 47/337 (13%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           ++M  A+  S+  +G  S NP V  +IVK+G +IG G     G  HAE  A+  A E+ +
Sbjct: 3   KYMKLAIELSKKGIGKVSPNPLVGAVIVKNGKIIGMGYHERYGGFHAERNAILNAKEDVK 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127
           G++ +V LEPCSH+G++ PC   II  GI +V +   DP+  V+G+G++ L + GI VD 
Sbjct: 63  GSSLFVNLEPCSHHGKNLPCVDLIISSGISKVYIASVDPNPLVNGKGIEKLKKNGIEVDV 122

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++  E K     +     +K  ++ LK+A++ D  I  +   S  IT   + N  H LR
Sbjct: 123 GLLSDEAKYLNRVFFKYITKKLPYVALKVALTLDGFIADSNGNSKWITK-QNFNVSHSLR 181

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
               +ILVG  TVL D+P LTCR  G    +P+RI+LD                      
Sbjct: 182 NFFSSILVGANTVLKDNPRLTCRNGG---RNPVRIVLD---------------------- 216

Query: 248 VTENDDPVLALAFRKKN---INIIYCDC----------RDLKKLLTILVGRGVTSLLVEG 294
               D   L   F   N     I++  C           +   +L+ L   G+ S+L+EG
Sbjct: 217 ---RDGITLGRGFNVYNEEARTIVFSKCCQGTLECYPETEPFDILSRLYNLGIDSVLIEG 273

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           GA+V   F+N    D + L+ S  + G G   SP E 
Sbjct: 274 GASVLSQFLN--FADELHLFYSTKIFGRG--LSPFEN 306


>gi|254447932|ref|ZP_05061396.1| riboflavin biosynthesis protein RibD [gamma proteobacterium
           HTCC5015]
 gi|198262358|gb|EDY86639.1| riboflavin biosynthesis protein RibD [gamma proteobacterium
           HTCC5015]
          Length = 363

 Score =  155 bits (392), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 118/356 (33%), Positives = 174/356 (48%), Gaps = 19/356 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEV---QALEEAGEEA 67
           M+ AL+ +   +  T +NP V C+I +   V+  G     G  HAEV   QAL E+  + 
Sbjct: 1   MARALQLAAKGLYSTRSNPRVGCVIARGERVLAEGYHQRPGEGHAEVRALQALPESESDL 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
             ATAYVTLEPCSHYG++ PC++ +I+ GI RVV  + DP+  V+G GL  L Q G+ V 
Sbjct: 61  STATAYVTLEPCSHYGKTGPCSEALIKAGIGRVVAAMVDPNPDVAGSGLARLQQAGVEVG 120

Query: 128 R-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++ESE +     ++ R       + LK+A S D    +A   S  IT   ++   H  
Sbjct: 121 SGLLESEARSLNPGFIQRMESGFPWVRLKMAASLDGRTALASGESQWITEAPARLDGHRW 180

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQ-----EHSPMRIILDPHFKLSLDSKIIKTAL 241
           RA++DAI+ G+ TVLAD+  LT R +  Q        P+R++LD   +   D+ ++  A 
Sbjct: 181 RARADAIVTGVETVLADNARLTPRADLPQGCSSASEPPLRVVLDSQLRTPADAALLGEAG 240

Query: 242 LAPVIIVTENDDPVL-ALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAV 298
              ++     D P L AL         I    +  DL  +L  L   GV     E GA +
Sbjct: 241 RVLILHRDGADSPRLRALLDAGAECAAIESSEKGLDLPSVLRYLGAAGVNECHFECGARL 300

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSD 349
           A S +   LVD ++ Y + ++IG      P+ E  L+     K F  V     G D
Sbjct: 301 AGSLLEEGLVDELLYYLAPVLIGSEA--KPIAEFSLQALSEKKAFKVVEERRMGRD 354


>gi|149921258|ref|ZP_01909714.1| riboflavin-specific deaminase
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Plesiocystis pacifica SIR-1]
 gi|149817918|gb|EDM77380.1| riboflavin-specific deaminase
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Plesiocystis pacifica SIR-1]
          Length = 366

 Score =  155 bits (392), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 116/324 (35%), Positives = 177/324 (54%), Gaps = 11/324 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           A +M  ALR ++   G T  NP V  ++VK G+V+GRG +   G PHAEV+AL +AG  A
Sbjct: 9   AHWMGHALRLAKSGTGATYPNPCVGAVLVKKGVVVGRGRSDVTGGPHAEVRALRQAGAAA 68

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           RGA  YVTLEPCSH GR+PPC   IIE G+RRV + V+DP   V G+G++ L + G+ V+
Sbjct: 69  RGAAMYVTLEPCSHRGRTPPCVDAIIEAGVRRVCIGVEDPAPHVGGKGIRKLRRAGLEVE 128

Query: 128 RMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +  +    +HA YL      R  +TLK+A S D  +  A   S  ITG  ++   H L
Sbjct: 129 VGVCGDQARSIHAHYLHHVATGRPFVTLKVASSIDGRLATASGDSKWITGAAARKSAHRL 188

Query: 187 RAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           RA    I VG  TVL D+P L  R ++G+    P+ +I D   +++   +     + A V
Sbjct: 189 RALHHGIAVGSETVLRDNPGLDVRHVDGVD---PIPVIFDSRLRVTAAKRAELKLMRAGV 245

Query: 246 IIV-TENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGAAVA 299
           +++ T            +  +  +      + R D++  L +L  R + SL+VEGG  + 
Sbjct: 246 LVLYTARASKTAQARLARTPVEGVEVPGDAEGRVDIEAALELLGARELRSLMVEGGGKLL 305

Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323
            SF+ +   + + +YR+ +++GEG
Sbjct: 306 GSFVAADAFEELWVYRAPVILGEG 329


>gi|90023098|ref|YP_528925.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Saccharophagus degradans 2-40]
 gi|89952698|gb|ABD82713.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Saccharophagus degradans 2-40]
          Length = 365

 Score =  155 bits (392), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 112/333 (33%), Positives = 178/333 (53%), Gaps = 19/333 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCPHAEVQALEE 62
           S  D RFM+ A++ +R     T+ NP V C++V     ++G G     G  HAEV A+ +
Sbjct: 5   SVADQRFMTRAMQLAREGTYTTTPNPRVGCVLVDAANNIVGEGYHVRAGEGHAEVNAIAD 64

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  ARG TAYVTLEPCSH G++ PC + ++  G+ RVV  ++DP+ +V+GRGL  L   
Sbjct: 65  AGAAARGTTAYVTLEPCSHTGKTGPCCEALVAAGVSRVVYGMEDPNPKVAGRGLDHLEAA 124

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI VD  ++E +       ++ R  +    I +K+A+S D    MA   S  IT   +++
Sbjct: 125 GIQVDGPVLEYDAYELNPGFIKRMRQGLPLIRIKMAMSLDGRTAMADGTSKWITSPRARD 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK--- 238
            V  LRA+S A++ G+ +VL DDP LT RL+      P+R+I+D   +L  D+ I+    
Sbjct: 185 DVQRLRARSCALITGVDSVLLDDPSLTVRLSD-DARQPLRVIVDSKLRLPKDAAILSQPG 243

Query: 239 TALLAPVIIVTENDDP-----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
             ++A    V +   P     +  L  +   ++        L+ L   L  +    +LVE
Sbjct: 244 KTVIATCANVNQAQSPYGDTEIWTLPEKDGRVS--------LQALARKLAQQECNEVLVE 295

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            GA +A +F++S LVD +++Y +  ++G    P
Sbjct: 296 TGATLAGAFVSSGLVDELVIYMAGKLLGSTARP 328


>gi|83815727|ref|YP_446405.1| riboflavin biosynthesis protein RibD [Salinibacter ruber DSM 13855]
 gi|83757121|gb|ABC45234.1| riboflavin biosynthesis protein RibD [Salinibacter ruber DSM 13855]
          Length = 373

 Score =  155 bits (392), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 113/335 (33%), Positives = 160/335 (47%), Gaps = 24/335 (7%)

Query: 10  FMSAALRFSRWHVGLTSTNPSV-ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA- 67
           +M   L  +R   G  S NP V A L+  DG V+G G     G PHAE +AL+ A ++  
Sbjct: 3   WMKRCLDLARTGAGTVSPNPMVGAVLLAPDGTVLGEGAHRTYGGPHAEARALQAAEQQHS 62

Query: 68  ----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
               + AT YV LEPC H+G++PPC   I+E  + RVVV   DP  +  GRG++ L ++G
Sbjct: 63  PAALQNATLYVNLEPCRHHGKTPPCTDLIVEKNVPRVVVGTVDPFPQAQGRGIRQLREQG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + V+  + E   +    A+       R  +TLK A + D  I      S  ITG  ++  
Sbjct: 123 VEVEVGVHEHACRRLNEAFFHHVDTGRPLVTLKTAQTLDGRIATRTGDSQWITGEAARTL 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           VH  RA+ D ILVG GT   DDP LT R ++G Q   P+R++LD    LS D  +   A 
Sbjct: 183 VHQWRAELDGILVGRGTAAHDDPRLTVRHVDGPQ---PLRLVLDRKGTLSPDRTLFTDAH 239

Query: 242 LAPVIIVTENDDPVLALA----------FRKKNINIIYCDCRDLKKLLTILVGRG---VT 288
               + V  +D P    A           R    +  + D   L + L    GR    + 
Sbjct: 240 ADDTVAVVGDDRPRPDYAGPLTNRGGAILRVPETDDAHLDLHALLQRLGTDAGRDAEPLQ 299

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           SLLVE G  +A +     LVD    + +  V+G+G
Sbjct: 300 SLLVEAGPGLATALFRQDLVDRFFCFVAPKVLGDG 334


>gi|227877508|ref|ZP_03995573.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Lactobacillus crispatus JV-V01]
 gi|227862901|gb|EEJ70355.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Lactobacillus crispatus JV-V01]
          Length = 356

 Score =  155 bits (392), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 107/322 (33%), Positives = 164/322 (50%), Gaps = 9/322 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGE 65
           D  +M  A++ ++  +  T  NP V  +IVKDG ++  G     G  HAE  A+ +   E
Sbjct: 8   DEAYMQLAIQEAKKGLYQTWKNPMVGAVIVKDGNILATGHHIRYGYYHAERDAISKLTPE 67

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +   +T YVTLEPCSHYG+ PPC+  I+   I+RVV+   DP   V+G+G+  L Q  I 
Sbjct: 68  QLFNSTLYVTLEPCSHYGKQPPCSDLIVSSKIKRVVIAQVDPHQLVTGKGIAKLRQHNIQ 127

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   ++E + K     Y          ITLK AVS D  I  A      IT      +VH
Sbjct: 128 VTVGVLEDQAKKLNKFYTYFYQHNHPWITLKQAVSLDYRINEAKNIRTQITNETVYQRVH 187

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALL 242
             RA   AI++G  T + D+P L   +    +  P+RII+D   +L   L+ K++ T  L
Sbjct: 188 RERANYQAIMIGSNTAIIDNPSLLTTVTT--DFPPIRIIVDRRGRLLNHLNIKLL-TDKL 244

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           +P  I T+N    LA     +NI+I       + +++  L    + S+ VEGG  +A++ 
Sbjct: 245 SPTWIFTQNTS--LAKTPHNENISIFLMKNASITEVIKKLTNEEIQSVYVEGGPTLANAL 302

Query: 303 INSRLVDSIILYRSQIVIGEGG 324
           +    V+++I Y S I++G+ G
Sbjct: 303 LAEGQVNNLITYISPILLGQKG 324


>gi|294508343|ref|YP_003572401.1| riboflavin biosynthesis protein RibD [Salinibacter ruber M8]
 gi|294344671|emb|CBH25449.1| riboflavin biosynthesis protein RibD [Salinibacter ruber M8]
          Length = 397

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/335 (33%), Positives = 160/335 (47%), Gaps = 24/335 (7%)

Query: 10  FMSAALRFSRWHVGLTSTNPSV-ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA- 67
           +M   L  +R   G  S NP V A L+  DG V+G G     G PHAE +AL+ A ++  
Sbjct: 27  WMKRCLDLARTGAGTVSPNPMVGAVLLAPDGTVLGEGAHRTYGGPHAEARALQAAEQQHS 86

Query: 68  ----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
               + AT YV LEPC H+G++PPC   I+E  + RVVV   DP  +  GRG++ L ++G
Sbjct: 87  PAALQNATLYVNLEPCRHHGKTPPCTDLIVEKNVPRVVVGTVDPFPQAQGRGIRQLREQG 146

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + V+  + E   +    A+       R  +TLK A + D  I      S  ITG  ++  
Sbjct: 147 VEVEVGVHEHACRRLNEAFFHHVDTGRPLVTLKTAQTLDGRIATRTGDSQWITGEAARTL 206

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           VH  RA+ D ILVG GT   DDP LT R ++G Q   P+R++LD    LS D  +   A 
Sbjct: 207 VHQWRAELDGILVGRGTAAHDDPRLTVRHVDGPQ---PLRLVLDRKGTLSPDRTLFTDAH 263

Query: 242 LAPVIIVTENDDPVLALA----------FRKKNINIIYCDCRDLKKLLTILVGRG---VT 288
               + V  +D P    A           R    +  + D   L + L    GR    + 
Sbjct: 264 ADDTVAVVGDDRPRPDYAGPLTNRGGAILRVPETDDAHLDLHALLQRLGTDAGRDAEPLQ 323

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           SLLVE G  +A +     LVD    + +  V+G+G
Sbjct: 324 SLLVEAGPGLATALFRQDLVDRFFCFVAPKVLGDG 358


>gi|311103895|ref|YP_003976748.1| riboflavin biosynthesis protein RibD [Achromobacter xylosoxidans
           A8]
 gi|310758584|gb|ADP14033.1| riboflavin biosynthesis protein RibD [Achromobacter xylosoxidans
           A8]
          Length = 383

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/320 (33%), Positives = 163/320 (50%), Gaps = 15/320 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           +P  + D  +M  AL  ++  +  T+ NP V C+IV+DG V+G G T   G PHAEV AL
Sbjct: 3   IPSDNDDIFWMRRALALAQTVMYSTAPNPRVGCVIVRDGRVLGEGATQPPGGPHAEVCAL 62

Query: 61  EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            +    GE   GAT YVTLEPCSH+GR+PPC   ++     RVVV + DP+  V+G+GL 
Sbjct: 63  RDVQARGESVEGATLYVTLEPCSHFGRTPPCVDAVLAARPARVVVAIGDPNPLVNGQGLA 122

Query: 118 WLSQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
            L   GI V   +     + ++A +++R       + LK+A S D    +    S  ITG
Sbjct: 123 RLRLAGIEVTTGVCGAEALAVNAGFISRMSRGLPWVWLKMAASLDGRSALHNGVSQWITG 182

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSK 235
             ++   H  RA++  +L G+GTVL DDP+L  R  G+     P + ++D  F++  D++
Sbjct: 183 PEARADGHRWRARACVVLTGMGTVLKDDPQLNVR--GVDTPRQPRKAVVDGRFEIPEDAR 240

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSL 290
           +      A VII T  +D       + KN  ++          DL  ++  L       +
Sbjct: 241 LFDG---AEVIIFTAREDAAKTARLQAKNARVVLLPGEAAGRVDLPAMIRWLAQEQFNEV 297

Query: 291 LVEGGAAVAHSFINSRLVDS 310
            VE GA ++ + + +  VD 
Sbjct: 298 HVEAGAGLSGALVAAGCVDE 317


>gi|254525413|ref|ZP_05137465.1| riboflavin biosynthesis protein RibD [Prochlorococcus marinus str.
           MIT 9202]
 gi|221536837|gb|EEE39290.1| riboflavin biosynthesis protein RibD [Prochlorococcus marinus str.
           MIT 9202]
          Length = 364

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/357 (28%), Positives = 175/357 (49%), Gaps = 8/357 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
            ++M  A+  +      TS NP V  +I+ K+G ++  G     G PHAE  A     ++
Sbjct: 9   TKWMKRAIFLASLGKNTTSPNPKVGAVILDKNGKLVSEGFHFKSGLPHAEAMAFNNLKQD 68

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            +G T YV LEPC H G++PPC   +I  G+++V + ++DPD RVSG+G++ L + G+ V
Sbjct: 69  VKGGTMYVNLEPCCHQGKTPPCVDKVISSGLKKVYISIEDPDKRVSGKGIKLLKKAGVQV 128

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              + + E      A++ R   K++   LK A+S D  I +    S  IT   S++ VH 
Sbjct: 129 HLGLCKKESLELNKAFIHRNTTKKAFGVLKWAMSIDGRIALKNGKSKWITNKESRSLVHS 188

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR++ DAI++G  T+  D+P LT R  G +   P+R++      L   S +        +
Sbjct: 189 LRSEFDAIIIGGNTLRRDNPLLTTR--GSKNPEPLRVVFTKSLDLPSKSNLWDCGEAKTL 246

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           +I   +      L+   K + +      + + +  IL  RG   +L E G+ +A + I S
Sbjct: 247 VIYDSSTANESFLSRIPKCVEVEKVSSDNPELISKILAKRGCNKVLWECGSRLATAAIKS 306

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362
             +  II + +  ++G     +P  +   E+    ++     SD  +  IG ++C++
Sbjct: 307 NCIQEIITFIAPKILGGENNMNPFGDFEFEEMDEIIKL----SDSKISLIGNDICVK 359


>gi|256842978|ref|ZP_05548466.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus
           125-2-CHN]
 gi|256848647|ref|ZP_05554081.1| riboflavin biosynthesis protein [Lactobacillus crispatus MV-1A-US]
 gi|262045946|ref|ZP_06018910.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus
           MV-3A-US]
 gi|293381447|ref|ZP_06627444.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus
           214-1]
 gi|256614398|gb|EEU19599.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus
           125-2-CHN]
 gi|256714186|gb|EEU29173.1| riboflavin biosynthesis protein [Lactobacillus crispatus MV-1A-US]
 gi|260573905|gb|EEX30461.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus
           MV-3A-US]
 gi|290921994|gb|EFD98999.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus
           214-1]
          Length = 353

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 107/322 (33%), Positives = 164/322 (50%), Gaps = 9/322 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGE 65
           D  +M  A++ ++  +  T  NP V  +IVKDG ++  G     G  HAE  A+ +   E
Sbjct: 5   DEAYMQLAIQEAKKGLYQTWKNPMVGAVIVKDGNILATGHHIRYGYYHAERDAISKLTPE 64

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +   +T YVTLEPCSHYG+ PPC+  I+   I+RVV+   DP   V+G+G+  L Q  I 
Sbjct: 65  QLFNSTLYVTLEPCSHYGKQPPCSDLIVSSKIKRVVIAQVDPHQLVTGKGIAKLRQHNIQ 124

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   ++E + K     Y          ITLK AVS D  I  A      IT      +VH
Sbjct: 125 VTVGVLEDQAKKLNKFYTYFYQHNHPWITLKQAVSLDYRINEAKNIRTQITNETVYQRVH 184

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALL 242
             RA   AI++G  T + D+P L   +    +  P+RII+D   +L   L+ K++ T  L
Sbjct: 185 RERANYQAIMIGSNTAIIDNPSLLTTVTT--DFPPIRIIVDRRGRLLNHLNIKLL-TDKL 241

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           +P  I T+N    LA     +NI+I       + +++  L    + S+ VEGG  +A++ 
Sbjct: 242 SPTWIFTQNTS--LAKTPHNENISIFLMKNASITEVIKKLTNEEIQSVYVEGGPTLANAL 299

Query: 303 INSRLVDSIILYRSQIVIGEGG 324
           +    V+++I Y S I++G+ G
Sbjct: 300 LAEGQVNNLITYISPILLGQKG 321


>gi|84496639|ref|ZP_00995493.1| riboflavin biosynthesis protein RibD [Janibacter sp. HTCC2649]
 gi|84383407|gb|EAP99288.1| riboflavin biosynthesis protein RibD [Janibacter sp. HTCC2649]
          Length = 341

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/303 (33%), Positives = 157/303 (51%), Gaps = 30/303 (9%)

Query: 25  TSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYG 83
           +  NP V C++V  DG ++  G     G PHAE  AL  AGE A+G TAYVTLEPC+H G
Sbjct: 25  SDANPRVGCVLVDPDGALVAEGWHQGAGTPHAEAAALAAAGERAKGCTAYVTLEPCNHTG 84

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYL 142
           R+ PC+  +   G+ RVV  V DP+   +G G  WL+++G+  +  ++E+E      ++L
Sbjct: 85  RTEPCSHALAAAGVSRVVYAVSDPNASAAG-GAAWLAERGVATEGGLLEAEATALNRSWL 143

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
            R    R  +T K+A + D     A   S  ITG  S+  VH  RA+  AI+VG GT L 
Sbjct: 144 HRIRTGRPWVTWKLAATLDGRSAAADGTSQWITGPESRQDVHEQRARCGAIIVGTGTALT 203

Query: 203 DDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
           DDP LT R     L +H P+R+I+     L+ D+++               DD       
Sbjct: 204 DDPRLTARRADGTLHDHQPLRVIMGLR-DLAPDARVF--------------DD------- 241

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
              +   ++   R  ++++  L  R +  + +EGG  VA +F+   LVD I+ Y + +++
Sbjct: 242 ---SAQTVHLRTRQPREVVAYLAEREIHHVWLEGGPTVAAAFMADGLVDEIVAYIAPVLL 298

Query: 321 GEG 323
           G G
Sbjct: 299 GRG 301


>gi|124026389|ref|YP_001015504.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. NATL1A]
 gi|123961457|gb|ABM76240.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. NATL1A]
          Length = 350

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 177/345 (51%), Gaps = 20/345 (5%)

Query: 23  GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G TS NP V  +++  +G ++G G     G PHAE++AL +AG+++   T  VTLEPC H
Sbjct: 13  GRTSPNPLVGSVVLDSNGRLVGEGFHTGAGNPHAEIEALAQAGKKSLDGTIVVTLEPCCH 72

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140
            G +PPC + II+ G+++VVV + DPD RVSG G+  L   G+ +++ ++  E +     
Sbjct: 73  QGLTPPCTEAIIKAGLKKVVVGMVDPDPRVSGNGISRLKDSGLEVIEGVLSQECESINRE 132

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +  R    R    LK A+S D  IG+    S  IT   +++ VH +R++ DA++VG GTV
Sbjct: 133 FSFRVRHGRPWGILKWAMSLDGKIGLPNGCSKWITDIPARDSVHRIRSKCDAVIVGGGTV 192

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV-TENDDPVLALA 259
            AD+P LT R  G  +  P+R++      L   +K+  T +   ++    E D+   +  
Sbjct: 193 RADNPLLTSR--GKSDFEPLRVVFSRTLNLPQSAKLWDTKIARTLVAYGPEGDESFFSDL 250

Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
                   +  D  +  +LL+ L  +G   +L E G  +A S I +  V  ++++ +  +
Sbjct: 251 LDGPEKLRLNSD--NPSELLSSLAKKGCNKILWECGPQLATSAIEANCVQELVVFVAPKL 308

Query: 320 IGEGGIPSPLEE-GY--------LEKNFMCVRRDYFGSDVCLEYI 355
           +G     SPL   G+        L+ +F+    D  G D+C   I
Sbjct: 309 LGGMSSMSPLNNFGFESISSSYKLQHSFL----DRKGEDICWRLI 349


>gi|167762046|ref|ZP_02434173.1| hypothetical protein BACSTE_00394 [Bacteroides stercoris ATCC
           43183]
 gi|167700138|gb|EDS16717.1| hypothetical protein BACSTE_00394 [Bacteroides stercoris ATCC
           43183]
          Length = 347

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/360 (31%), Positives = 177/360 (49%), Gaps = 42/360 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + ++M   ++ ++  +   + NP V  +IV DG +IG G     G  HAEV A+    + 
Sbjct: 3   EEKYMRRCIQLAQNGLCNAAPNPMVGAVIVCDGKIIGEGYHVRCGEAHAEVNAIRSVKDP 62

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +  + +T YV+LEPC+HYG++PPCA  IIE  I R+V+   DP  +V+GRG++ L   G 
Sbjct: 63  SLLKRSTIYVSLEPCAHYGKTPPCADLIIEKEIPRIVIGCQDPFAKVAGRGIRKLKDAGR 122

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI------GMAGCGSVPITGF 177
            ++  ++E E +  +  ++T     R +ITLK A S D  I      G     S P+T  
Sbjct: 123 EVITGVLEDECRSLIRRFITFHTLHRPYITLKWAESADKYIDKNREDGQPVILSTPLTSM 182

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
           +    VH  RA+ +AI+VG  T   D+P LT R    Q  SP+RI+ D   +LS   ++ 
Sbjct: 183 L----VHKKRAEHNAIMVGTRTAELDNPSLTVR--NWQGRSPVRIVTDRQLRLSPKLRVF 236

Query: 238 KTALLAPVIIVTENDDPVLALAFRKK------NINIIYCDCRD--LKKLLTILVGRGVTS 289
                         D  V  L F +K      N+  I  D +   L +++  L  +G+ S
Sbjct: 237 --------------DGNVRTLVFTEKPCQPQPNVEYIPIDFQRNILPQIMEHLYMQGLQS 282

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           LLVEGG  +  SFI++ L D   +  S + +   GI +P     +     C    YFG +
Sbjct: 283 LLVEGGNILLQSFIDAELWDEAFVEESPLTL-LSGIKAP----EIGNKAPCTNEVYFGRN 337


>gi|254468535|ref|ZP_05081941.1| riboflavin biosynthesis protein RibD [beta proteobacterium KB13]
 gi|207087345|gb|EDZ64628.1| riboflavin biosynthesis protein RibD [beta proteobacterium KB13]
          Length = 363

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 162/328 (49%), Gaps = 15/328 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  +  D  FM+ A++ ++  +G  + NP V  +IV D  +I  G     G PHAEV A+
Sbjct: 1   MTFNKLDFFFMAQAIKLAKKGLGQCNPNPIVGAVIVVDDKIIATGYHQEFGGPHAEVVAI 60

Query: 61  EEAGEEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
               ++A  + +T +VTLEPC+H G++PPC   I++  I+RVV+   DP+ +V+G  ++ 
Sbjct: 61  HNCKDKALLKKSTLFVTLEPCAHEGKTPPCLDLILKHDIKRVVIASQDPNPKVNGISIKS 120

Query: 119 LSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L +KG+ VD  +ME +       +  R +     +  KIAVS D    +    S  I+  
Sbjct: 121 LIEKGVEVDVGLMEDQAFNLNKGFFKRILNNIPRVVSKIAVSSDGKTALNNFQSKWISNE 180

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            S++ V  LR  SD IL    T+ +D+P  T R +      P R I+D  F+ +LD+ I 
Sbjct: 181 FSRSDVQKLRRLSDGILTSYKTINSDNPRFTVR-DVDSSKQPYRFIIDASFQSNLDAHIF 239

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVE 293
           K   +         + P L           I   C D      +++  +    V +LLVE
Sbjct: 240 KQEKVVIFYSKEITNKPNLKAI-------CIPVSCVDGVLNFTEIMKHIASMEVNNLLVE 292

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG 321
            G  +    +  R++D +I+Y+SQ ++G
Sbjct: 293 AGPGLNGLLLQHRMIDELIIYQSQSLLG 320


>gi|134095549|ref|YP_001100624.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (N-terminal)/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Herminiimonas arsenicoxydans]
 gi|133739452|emb|CAL62503.1| bifunctional riboflavin biosynthesis protein ribD [Includes:
           Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (Riboflavin-specific deaminase);
           5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
           reductase)] [Herminiimonas arsenicoxydans]
          Length = 363

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/324 (35%), Positives = 168/324 (51%), Gaps = 12/324 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D + +  AL  +   +  T+ NP V C+IVK+  VIG G T   G  HAEVQAL +A   
Sbjct: 6   DVQGIRLALELAARGMFTTAPNPRVGCVIVKENQVIGSGYTQPAGHAHAEVQALNDAANK 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G +  G+T YVTLEPCSH+GR+PPCA  +I   + RVV  + DP+  V+G+GL  L   G
Sbjct: 66  GYDVAGSTVYVTLEPCSHHGRTPPCADALIRARVARVVAAIADPNPLVAGQGLARLEAAG 125

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   ++E+E +     +L+R    +  + +K A S D M  +    S  ITG  ++  
Sbjct: 126 IEVACGVLEAEAREINIGFLSRMQHGKPWVRMKSAASLDGMTALHNGISQWITGDEARAD 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H+ RA++ AIL GIGTV  DDP+LT R   +    P RI++D   ++S  ++++     
Sbjct: 186 GHVWRARACAILTGIGTVREDDPQLTVRAIDIPRQ-PQRIVIDSQLQISPHARVLSG--- 241

Query: 243 APVIIVTENDDPVLALAFRKKNINIIY---CDCR-DLKKLLTILVGRGVTSLLVEGGAAV 298
               IV     P      R     II     D + DL  L+  L  R +  L VE G  +
Sbjct: 242 GGTWIVAAQAHPAREKILRDLGNEIIVLPNADGKVDLPALMLELGRRQINELHVEAGFKL 301

Query: 299 AHSFINSRLVDSIILYRSQIVIGE 322
             S I    VD +++Y +  ++G+
Sbjct: 302 NGSLIREDCVDELLVYLAPTLLGD 325


>gi|116334232|ref|YP_795759.1| pyrimidine reductase, riboflavin biosynthesis [Lactobacillus brevis
           ATCC 367]
 gi|116099579|gb|ABJ64728.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Lactobacillus brevis ATCC 367]
          Length = 356

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/362 (30%), Positives = 175/362 (48%), Gaps = 11/362 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE--A 63
            +  FM  A+  +R   G T TNP V  + VK G ++  G     G  HAE+ AL +   
Sbjct: 2   LEQSFMQQAVIAARRGSGHTWTNPLVGAVFVKHGKILSVGYHHRYGQRHAEIDALAQLQR 61

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            ++A+GAT YVTLEPCSH+G++PPCA  +IE G+ RVV+   DP+  V+GRG+  L   G
Sbjct: 62  PQQAQGATLYVTLEPCSHFGKTPPCADRLIEVGVGRVVIGQRDPNPLVAGRGISKLRAAG 121

Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
           I V  +  +       AY       R  +T+K A+S D  +  A      +TG  +    
Sbjct: 122 IPVSVLDSTTA--LNPAYNFYYQHHRPQVTVKYAMSLDGKVNQAEAQRTYLTGAAAMADS 179

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
             LR Q  AIL+G  T+  D P LT R     E  P+R+++  H    +D+         
Sbjct: 180 QQLRRQQQAILIGERTLTIDHPRLTIRDAITDEPVPIRMVVL-HDIEHIDTSQPLFKAPG 238

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P+ ++T +     A     + + +          +  +   +G+ +LLVEGG+ +  +F+
Sbjct: 239 PIWLLTTHP----ATCQLPEQVRVFTRTTWSPAAITALCYQQGIQALLVEGGSHLQAAFV 294

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGY--LEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
              L D +++Y S ++IG  G+P+     +   ++ ++       G+DV L    +  C 
Sbjct: 295 RDDLADQLVIYLSPLLIGGAGLPAVYAPDWPSPKRAYIPPVTTLLGNDVKLTTRRQRKCS 354

Query: 362 QE 363
           QE
Sbjct: 355 QE 356


>gi|296140262|ref|YP_003647505.1| riboflavin biosynthesis protein RibD [Tsukamurella paurometabola
           DSM 20162]
 gi|296028396|gb|ADG79166.1| riboflavin biosynthesis protein RibD [Tsukamurella paurometabola
           DSM 20162]
          Length = 332

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 149/304 (49%), Gaps = 33/304 (10%)

Query: 23  GLTSTNPSV-ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G+++ NP V A ++  DG V GRG TA  G PHAEV AL EAG+ ARG TA VTLEPC H
Sbjct: 23  GVSTPNPPVGAVILAADGTVAGRGRTAPAGGPHAEVVALAEAGDAARGGTAVVTLEPCDH 82

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
            GR+ PC Q +I  GI RV     DP+   +G G   L   G+ V  +        L  +
Sbjct: 83  TGRTGPCTQALIAAGIARVAYAAADPNPVAAG-GAATLRSAGLDVTHLGVEPWP--LTEW 139

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
           L RQ   R  +T+K+A + D  I      S  ITG  ++ +VH  RAQ DAI+VG GTV 
Sbjct: 140 LFRQRHGRPMVTVKLAATVDGRIAAPDGTSQWITGPAARARVHAERAQLDAIIVGTGTVA 199

Query: 202 ADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
            DDP LT R     L  H P RI++    ++S  +KI                      A
Sbjct: 200 VDDPALTARRPDGSLYRHQPNRIVIG-DREVSSGAKI---------------------FA 237

Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
              K + +   D R         V      + VEGG+ V  +F+ + LVD +  Y + ++
Sbjct: 238 APGKVVRVHGHDPRAALAAAADAV-----HVQVEGGSTVIGAFLAAGLVDRVQAYIAPVL 292

Query: 320 IGEG 323
           +G G
Sbjct: 293 LGAG 296


>gi|326382172|ref|ZP_08203864.1| riboflavin biosynthesis protein RibD [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198902|gb|EGD56084.1| riboflavin biosynthesis protein RibD [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 339

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/318 (35%), Positives = 153/318 (48%), Gaps = 33/318 (10%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  A+  S    G T+ NP V  +++  DG + G G T   G PHAEV AL  AGE ARG
Sbjct: 10  MRRAIAESEAAQGFTTPNPPVGAVVLDADGEIAGVGRTQPPGGPHAEVMALRAAGERARG 69

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128
            TA VTLEPC H GR+ PC Q ++  GI  V   V DP+   +G G Q L   G+ V   
Sbjct: 70  GTAVVTLEPCDHTGRTGPCTQALLSAGIADVHFAVADPNPDAAG-GAQTLRAAGVDVHPG 128

Query: 129 MMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
           ++ESE +   L  +L RQ   R  +T KIA + D  I      S  ITG  ++   H +R
Sbjct: 129 VLESEARSGPLKYWLFRQKTGRPFVTAKIAATADGRIAAPDGSSQWITGPQAREHAHEVR 188

Query: 188 AQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            + DAI+VG GTVL DDP LT R     L +H P R++L                     
Sbjct: 189 GRLDAIVVGTGTVLVDDPSLTARRPDGRLLDHQPTRVVLG-------------------- 228

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
                 + P  A   R  +   ++   RD + ++  L       +LVEGG  V  +F+ +
Sbjct: 229 ----LREVPAAAR-VRDGSAPFVHVASRDPRAVVDALP--DALHVLVEGGPEVIGAFLAA 281

Query: 306 RLVDSIILYRSQIVIGEG 323
            LVD I  Y +  ++G G
Sbjct: 282 GLVDEIHAYLAPTILGAG 299


>gi|257868250|ref|ZP_05647903.1| riboflavin-specific deaminase [Enterococcus casseliflavus EC30]
 gi|257874477|ref|ZP_05654130.1| riboflavin biosynthesis protein RibD [Enterococcus casseliflavus
           EC10]
 gi|257802364|gb|EEV31236.1| riboflavin-specific deaminase [Enterococcus casseliflavus EC30]
 gi|257808641|gb|EEV37463.1| riboflavin biosynthesis protein RibD [Enterococcus casseliflavus
           EC10]
          Length = 358

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/353 (33%), Positives = 169/353 (47%), Gaps = 28/353 (7%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE--AGEEARGATAYVTLEPCSHY 82
           T TNP V  +IVK+  VI +G     G PHAE  A+E+  + E+   +T YVTLEPC+H 
Sbjct: 20  TFTNPLVGAVIVKEQRVIAKGAHLVYGQPHAERNAIEQCHSSEDLINSTLYVTLEPCNHQ 79

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG--KIFLHA 140
           G+ PPC Q II+ GI++VVV   DP+  V+G+G ++L ++GI V   +E     ++  H 
Sbjct: 80  GKQPPCTQLIIDSGIKKVVVGQLDPNPIVAGQGKRFLEEQGIDVLVGIEETAVRRLNPHY 139

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
               Q  +R ++ LK A++ D  I         ITG      VH  R     ILVG  TV
Sbjct: 140 NFYHQ-HQRPYVALKQAITLDGRIAHDALTRSAITGSAVWQNVHQERGDYQGILVGSQTV 198

Query: 201 LADDPELTCRLNGLQEHSPMRIILD--------PHFKLSLDSKIIKTALLAPVIIVTEND 252
           L DDP L   +       P+RI+LD        PH  L +D         APV I T+  
Sbjct: 199 LTDDPTLLTTVET--SFPPIRIVLDRRGRTLSQPHLALFVDDS-------APVWIFTQQ- 248

Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
                ++    ++++I  +   +  LL  L  R V SL VEGGAA+  +F+ S L    I
Sbjct: 249 ---TTVSDLPAHVSVIQLEELTIVSLLKELAARQVQSLYVEGGAAIHDAFLASGLWQESI 305

Query: 313 LYRSQIVIGEGGIPSPLEEGYLE--KNFMCVRRDYFGSDVCLEYIGKNLCLQE 363
            Y +   +G   + S   E   +  +    V     G DVC+       C Q+
Sbjct: 306 TYVAPKFLGGNSLASFTSERTPKQLQQLTEVTVTAVGEDVCIRGRRPEECSQD 358


>gi|187479427|ref|YP_787452.1| riboflavin biosynthesis protein [includes
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           and 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bordetella avium 197N]
 gi|115424014|emb|CAJ50567.1| riboflavin biosynthesis protein [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           and 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bordetella avium 197N]
          Length = 371

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/321 (32%), Positives = 163/321 (50%), Gaps = 13/321 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
           M  AL  +R  +  T+ NP V C+IV+DG ++G G T   G  HAEV AL  A   G + 
Sbjct: 1   MQRALGLAREVLYTTTPNPRVGCVIVRDGQILGEGATQPPGGGHAEVMALRAARAAGHDL 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            GAT YVTLEPCSH+GR+PPC   ++     RVVV + DP+ RVSG+G   L   G+ V 
Sbjct: 61  AGATVYVTLEPCSHFGRTPPCVDALVAAAPARVVVALGDPNPRVSGQGFARLRAAGVEVS 120

Query: 128 R-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             + E E       ++ R       + LK+A S D    +    S  ITG  ++   H  
Sbjct: 121 SGVCEEEALALNPGFVARMSRGTPWLWLKLAASLDGRSALHNGLSQWITGEAARADGHAW 180

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA++D +L G+GT++ DDP+L  R        P R ++D  F++  D+++       PV 
Sbjct: 181 RARADLVLTGLGTIVHDDPQLNVRAVSTPRQ-PRRGVVDGQFRVPEDARLFDG---EPVW 236

Query: 247 IVTENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           + T   D   A     +N+ ++       +  DL  ++  L       + VE GA ++ +
Sbjct: 237 VFTARQDHAKAERLASRNVEVVCLPDASGEHVDLPGMMRWLGAHECNEVHVEAGAGLSGA 296

Query: 302 FINSRLVDSIILYRSQIVIGE 322
            + +  VD +++Y + +++G+
Sbjct: 297 LLAADCVDELLVYLAPVLLGD 317


>gi|241888469|ref|ZP_04775779.1| riboflavin biosynthesis protein RibD [Gemella haemolysans ATCC
           10379]
 gi|241864861|gb|EER69233.1| riboflavin biosynthesis protein RibD [Gemella haemolysans ATCC
           10379]
          Length = 356

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/322 (34%), Positives = 161/322 (50%), Gaps = 12/322 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAGEEA 67
           FM  AL  ++     T TNP V  +IVKD  +I RG     GC HAE  A+   E  E+ 
Sbjct: 5   FMKLALLEAKRGTKYTHTNPIVGAIIVKDDEIIARGSHLRYGCEHAEKNAISTCETPEKL 64

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
             +T YVTLEPC+H G+ PPC   I+E GI +VVV   DP+  VSG+G+++L   GI ++
Sbjct: 65  FNSTLYVTLEPCNHKGKQPPCTDTIVEMGISKVVVAQLDPNPLVSGKGIKYLQDNGIEVI 124

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++E E     +AY     EKR ++ LK A S D  +         ITG    + V   
Sbjct: 125 TGVLEKEAYNLNYAYNLFHSEKRPYVVLKQATSLDGKLAFTN-KRTQITGKDVYDFVRNE 183

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL-SLDSKIIKTALLAPV 245
           R    AILVG  TVL D+P+LT     L    P RI+LD    +   ++  +    L+ V
Sbjct: 184 RDNYQAILVGARTVLTDNPKLTGANTSL--FPPKRIVLDADGDIFEHNNLNLFNNSLSEV 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           I+ T+     L       ++ II      +K++L+ +   G+ S+ VEGG  +   F+ S
Sbjct: 242 IVFTKQKCKNLP-----SHVTIITPKEFSIKEILSEVAKLGIQSVYVEGGPNIHDQFLAS 296

Query: 306 RLVDSIILYRSQIVIGEGGIPS 327
              D +I Y S I++G     S
Sbjct: 297 GYWDEVITYISPILLGGNNTSS 318


>gi|257877850|ref|ZP_05657503.1| riboflavin biosynthesis protein RibD [Enterococcus casseliflavus
           EC20]
 gi|257812016|gb|EEV40836.1| riboflavin biosynthesis protein RibD [Enterococcus casseliflavus
           EC20]
          Length = 358

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 118/353 (33%), Positives = 167/353 (47%), Gaps = 28/353 (7%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--GEEARGATAYVTLEPCSHY 82
           T TNP V  +IVK+  VI +G     G PHAE  A+E+    E+   +T YVTLEPC+H 
Sbjct: 20  TFTNPLVGAVIVKEQRVIAKGAHLVYGQPHAERNAIEQCHFSEDLINSTLYVTLEPCNHQ 79

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG--KIFLHA 140
           G+ PPC Q II+ GI++VV+   DP+  V+G+G Q+L ++GI V   +E     ++  H 
Sbjct: 80  GKQPPCTQLIIDSGIKKVVIGQLDPNPIVAGQGKQFLEEQGIDVLVGIEETAVRRLNPHY 139

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
               Q  +R ++ LK A++ D  I         ITG      VH  R     ILVG  TV
Sbjct: 140 NFYHQ-HQRPYVALKQAITLDGRIAHDALTRSAITGSAVWQNVHQERGDYQGILVGSQTV 198

Query: 201 LADDPELTCRLNGLQEHSPMRIILD--------PHFKLSLDSKIIKTALLAPVIIVTEND 252
           L DDP L   +       P+RI+LD        PH  L  D         APV I T+  
Sbjct: 199 LTDDPTLLTTVET--SFPPIRIVLDRRGRTLSQPHLALFADDS-------APVWIFTQQ- 248

Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
                ++    ++++I  +   +  LL  L  R V SL VEGGAA+  +F+ S L    I
Sbjct: 249 ---TTVSDLPAHVSVIQLEELTIVSLLKELAARQVQSLYVEGGAAIHDAFLASGLWQESI 305

Query: 313 LYRSQIVIGEGGIPSPLEEGYLE--KNFMCVRRDYFGSDVCLEYIGKNLCLQE 363
            Y +   +G   + S   E   +  +    V     G DVC+       C Q+
Sbjct: 306 TYVAPKFLGGNSLASFTSERTPKQLQQLTEVTVTAVGEDVCIRGRRPEECSQD 358


>gi|217076388|ref|YP_002334104.1| riboflavin biosynthesis protein RibD [Thermosipho africanus TCF52B]
 gi|217036241|gb|ACJ74763.1| riboflavin biosynthesis protein RibD [Thermosipho africanus TCF52B]
          Length = 343

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 107/336 (31%), Positives = 169/336 (50%), Gaps = 27/336 (8%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +FM  AL+ ++   G  S NP V  +IVKDG +I  G     G  HAE  A+  A     
Sbjct: 3   KFMKLALKLAKKGTGRVSPNPLVGAVIVKDGKIISTGYHKRYGDFHAERNAILNAKTSLE 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127
           G+T +V LEPC H+G++PPC   II+  I +V + + DP+  V+G+G+  L + GI V  
Sbjct: 63  GSTLFVNLEPCCHHGKTPPCTDLIIKSKISQVFISILDPNPLVNGKGVDILRKNGIEVHV 122

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV---H 184
            ++E E       ++    +K  ++ LK+A++ D  I    C ++  + +I+KN     H
Sbjct: 123 GLLEKEASYLNRVFIKFITKKTPYVALKVAMTLDGFI----CDNLGKSKWITKNNFNISH 178

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR    AI+VG  TVL D+P+LTCR  G    +P+RIILD   KL+             
Sbjct: 179 NLRNFFTAIMVGANTVLKDNPQLTCRNGG---RNPIRIILDYEGKLA-----------GK 224

Query: 245 VIIVTENDDPVLALAFR--KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
              V ++    +  + R  K N    Y + R  + +L  L    + S+L+EGGA+V   F
Sbjct: 225 NFSVFDDQSRTIVFSSRCEKYNGAECYPETRP-EDILERLYSLNIDSVLIEGGASVLSQF 283

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
            +    D + L+ +  + G+G       E Y+++ F
Sbjct: 284 YD--FSDELHLFYAPKIFGKGLSAFSGIEKYIDEEF 317


>gi|320449997|ref|YP_004202093.1| riboflavin biosynthesis protein RibD [Thermus scotoductus SA-01]
 gi|320150166|gb|ADW21544.1| riboflavin biosynthesis protein RibD [Thermus scotoductus SA-01]
          Length = 383

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 113/380 (29%), Positives = 184/380 (48%), Gaps = 37/380 (9%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   D RF+  AL+ +    G T  NP V  ++V++G V+G G     G  HAEV AL +
Sbjct: 7   LRELDERFLRRALQLAERARGHTHPNPLVGAVLVREGRVVGEGYHPRAGEAHAEVYALRQ 66

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGEEA+GAT YV+LEPC+H+GR+PPC+  +++ G+ RVV    DP+    G GL+ L   
Sbjct: 67  AGEEAQGATLYVSLEPCNHFGRTPPCSLALLQAGVARVVAAARDPNPLAQG-GLERLRAG 125

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ V+  ++E+E +     +   Q + R  + LK A++ D  +      +  ++   S+ 
Sbjct: 126 GVEVEAGLLEAEAQGQNEVFFHVQQKGRPFVLLKAALTLDGKVAALSGDARYVSSEESRR 185

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFKLS 231
                R     ++VG+GTVL DDP LT R    +             P++++LD   +  
Sbjct: 186 VAQAYRQWLPVVMVGVGTVLKDDPWLTVREPDFRPFPLMLEPPPLRDPVKVVLDTEGRTP 245

Query: 232 LDSKIIKTALL---APVIIVTENDDPVLAL-AFRKKNINIIYCDCR----DLKKLLTILV 283
             ++I +       A V ++     P   L A  +    ++          L   L +L+
Sbjct: 246 PTARIFQKGPRGEPARVYVLVGKGAPKDRLRALEEAGARVVELPREGGRVSLDGALHLLL 305

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-------- 335
             G+  +L+EGG  +A +F    LVD + L+ +  V+GEG        G+LE        
Sbjct: 306 EEGLDGILLEGGPRLAGAFWERGLVDKLALFVAPKVLGEG-------RGFLEGFALERMA 358

Query: 336 --KNFMCVRRDYFGSDVCLE 353
             K    VR+++ G D+ LE
Sbjct: 359 EAKRLRLVRKEWLGEDLWLE 378


>gi|318057036|ref|ZP_07975759.1| putative riboflavin/cytosine deaminase [Streptomyces sp. SA3_actG]
          Length = 364

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 117/327 (35%), Positives = 168/327 (51%), Gaps = 11/327 (3%)

Query: 22  VGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCS 80
           +G T  NP V C+++   G V G G     G PHAE+ AL  AGE ARG TA VTLEPC 
Sbjct: 21  LGRTRPNPVVGCVVLDASGEVAGSGWHQRAGGPHAEIHALRAAGERARGGTALVTLEPCD 80

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLH 139
           H GR+ PC++ +IE G+RRVV  V DP  + +G G   L   G+ V+  ++E E      
Sbjct: 81  HTGRTGPCSRALIEAGVRRVVHAVADPTDQATG-GADTLRAAGVDVEHGLLEREAADVNA 139

Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199
           A+LT     R H+T K A S D     A   S  IT   ++  VH LRA  DA+LVG GT
Sbjct: 140 AWLTAARLGRPHVTWKYAASLDGRTAAADGTSRWITSPEARADVHRLRATCDAVLVGSGT 199

Query: 200 VLADDPELTCR-LNGLQEHSPMRIILDPH-FKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
              DDP L  R + G  +  P+R++LD     +   ++++  A  AP ++   +D P  A
Sbjct: 200 ARTDDPHLAVRGIPGAPQ--PLRVVLDTEGTAVRGGARVLDDA--APTLVALADDAPAPA 255

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
                  +        DL  LL  L  R V  +L+EGGA +A +F+ +   D ++ Y + 
Sbjct: 256 HGAELLRLPRAAHGGLDLTALLAALYARDVRGILLEGGARLAGAFVAAGYTDRVVGYLAP 315

Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           +++G G  P+ L +  +      +R D
Sbjct: 316 VLLGAG--PAALTDAGIPTLTAALRLD 340


>gi|224536352|ref|ZP_03676891.1| hypothetical protein BACCELL_01226 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522049|gb|EEF91154.1| hypothetical protein BACCELL_01226 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 348

 Score =  153 bits (387), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 106/318 (33%), Positives = 168/318 (52%), Gaps = 19/318 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + ++M   ++ ++  +   + NP V  +IV DG +IG G     G  HAEV A+    E 
Sbjct: 6   EEKYMRRCIQLAQNGLCNAAPNPMVGAVIVCDGKIIGEGYHVRCGKAHAEVNAIRSVKET 65

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG- 123
           +  + +T YV+LEPCSH+G++PPCA  IIE  I R+V+   DP  +V+GRG+Q L   G 
Sbjct: 66  SLLKRSTIYVSLEPCSHHGKTPPCADLIIEKQIPRIVIGCQDPFSKVAGRGIQKLKDAGR 125

Query: 124 -IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISK 180
            +IV  ++E E +  +  ++T     R +ITLK A S D  I +      P+  +  ++ 
Sbjct: 126 EVIVG-VLEDECRHLIKRFITFHTLHRPYITLKWAESADGFIDLCRTEGNPVILSTPLTS 184

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             VH  RA+  AILVG  T   D+P L  R       SP+R+++D    LS    +   +
Sbjct: 185 MLVHKKRAEHSAILVGTRTAKLDNPSLNVR--NWYGRSPIRLVIDRKQSLSPTLHLFDGS 242

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAV 298
           +L   ++ TE+    L       N+  +  D +   L +++ IL  RG+ SLLVEGG+ +
Sbjct: 243 VLT--LVFTEHFHDALP------NVEYLPIDFQQDILPQIMQILYERGIQSLLVEGGSTL 294

Query: 299 AHSFINSRLVDSIILYRS 316
             SFI++ L D + +  S
Sbjct: 295 LQSFIDAGLWDEVYVEES 312


>gi|262182497|ref|ZP_06041918.1| riboflavin biosynthesis protein ribD [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 342

 Score =  153 bits (387), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 109/306 (35%), Positives = 147/306 (48%), Gaps = 34/306 (11%)

Query: 23  GLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G TS NP V  +I+   G V+G G T   G PHAEV AL +AG++ARG TA VTLEPC+H
Sbjct: 26  GTTSPNPPVGAVILDSAGQVVGVGATQPPGGPHAEVMALRDAGDKARGGTAVVTLEPCNH 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM-MESEGKIFLHA 140
            GR+ PCAQ +I+  +  V     DP  +  G G   L + GI V ++   +E    L  
Sbjct: 86  TGRTGPCAQALIDASVAAVYYLHPDPTPQAGG-GSTTLRRAGITVGQLSAPTERADALEP 144

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +L      R H+TLK A S D         S  ITG  ++  VH  R Q DAIL+G GT 
Sbjct: 145 WLGAVALGRPHVTLKFAQSLDGFTAAVDGSSQWITGEQAREHVHRDRTQRDAILIGTGTA 204

Query: 201 LADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           LAD+P LT R     L+   P R++        + S+ +                     
Sbjct: 205 LADNPSLTARFPDGSLRPQQPRRVV--------IGSRNVSHG------------------ 238

Query: 259 AFRKKNINII-YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
              K N+  + +      ++ L  L   G   +LVEGGA +A SF+    VD I  Y   
Sbjct: 239 --GKTNLERLGFEHYASPQEALAELYTTGARDILVEGGAGLATSFMELGFVDRIQAYIGN 296

Query: 318 IVIGEG 323
           +V+GEG
Sbjct: 297 VVLGEG 302


>gi|123968996|ref|YP_001009854.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. AS9601]
 gi|123199106|gb|ABM70747.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. AS9601]
          Length = 364

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 171/357 (47%), Gaps = 9/357 (2%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           ++M  A+  +      TS NP V  +I+ K+G +I  G     G PHAE  A     ++ 
Sbjct: 10  KWMKRAIFLASLGKNTTSPNPRVGAVIIDKNGKLIAEGFHYKAGMPHAEAMAFNNLKKDP 69

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           +G + YV LEPC H GR+PPC   +I  GI++  + ++DPD RV+G+G++ L + GI V 
Sbjct: 70  KGGSIYVNLEPCCHQGRTPPCVDKVISSGIKKAYISIEDPDARVAGKGIKLLEEAGIQVH 129

Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             + + E     +A++ R +  ++    K A+S D  I +    S  IT   S+  VH  
Sbjct: 130 LGLCKKESLDLNNAFIHRNITNKAFGVFKWAMSIDGRIALKNGKSKWITNEESRALVHSF 189

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R++ DAI++G  T+  D+P LT R  GL+   P+R++      L   S +        ++
Sbjct: 190 RSEFDAIIIGGNTLRRDNPLLTTR--GLKNPEPLRVVFTKSLDLPTKSNLWDCNKAKTLV 247

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           I   +      L    K++ I      + + +  IL  RG   +L E G  +A + I S 
Sbjct: 248 IYDSSTANESYLNRIPKSVEIEKVSSDNPELISKILAKRGCNKVLWECGPRLATAAIKSN 307

Query: 307 LVDSIILYRSQIVIGEGGIPSPL---EEGYLEK--NFMCVRRDYFGSDVCLEYIGKN 358
            +  II + +  ++G     +PL   E G + +       +    G D+C++   KN
Sbjct: 308 CIQEIITFIAPKILGGENSMNPLGDFEFGEMHEIIKLSESQHSLIGDDICVKGSLKN 364


>gi|260436195|ref|ZP_05790165.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 8109]
 gi|260414069|gb|EEX07365.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 8109]
          Length = 354

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 106/309 (34%), Positives = 166/309 (53%), Gaps = 8/309 (2%)

Query: 23  GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G TS NP V  +++ + G ++G G  A  G  HAEV AL +AG+ ARG T  VTLEPC H
Sbjct: 18  GHTSPNPLVGAVVLDRQGRLVGEGFHARAGDAHAEVGALRQAGDAARGGTLVVTLEPCCH 77

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140
           +GR+PPC++ ++  GI RVV+ ++DPD RV G G++ L + G+ ++  ++  E +    A
Sbjct: 78  HGRTPPCSEAVLSAGIGRVVIALEDPDPRVDGGGIRQLREAGLEVISGVLREEARQQNRA 137

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +L R    R    LK A+S D    +    S  I+G  +++ VH LR+  DA++VG GTV
Sbjct: 138 FLHRVRTGRPFGVLKWAMSLDGRTALPNGVSQWISGPSARDWVHRLRSGMDAVVVGGGTV 197

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
             DDP LT R  G +   P+R++L     L   +++  TA LAP ++    D  +  L  
Sbjct: 198 RGDDPLLTSR--GRRSPEPLRVVLSRSLDLPNQAQLWDTA-LAPTLVAHGPDADLRRLPS 254

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
             + + +  C+    ++L+  L  RG   +L E G  +A + I    V  I    +  ++
Sbjct: 255 GPEELGLSACEP---QQLMEALAKRGCNQVLWECGPELAAAAIRQGCVQEIAAVVAPKLM 311

Query: 321 GEGGIPSPL 329
           G     +PL
Sbjct: 312 GGMAARTPL 320


>gi|227833015|ref|YP_002834722.1| riboflavin biosynthesis protein ribD [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227454031|gb|ACP32784.1| riboflavin biosynthesis protein ribD [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 332

 Score =  153 bits (386), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 109/306 (35%), Positives = 147/306 (48%), Gaps = 34/306 (11%)

Query: 23  GLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G TS NP V  +I+   G V+G G T   G PHAEV AL +AG++ARG TA VTLEPC+H
Sbjct: 16  GTTSPNPPVGAVILDSAGQVVGVGATQPPGGPHAEVMALRDAGDKARGGTAVVTLEPCNH 75

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM-MESEGKIFLHA 140
            GR+ PCAQ +I+  +  V     DP  +  G G   L + GI V ++   +E    L  
Sbjct: 76  TGRTGPCAQALIDASVAAVYYLHPDPTPQAGG-GSTTLRRAGITVGQLSAPTERADALEP 134

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +L      R H+TLK A S D         S  ITG  ++  VH  R Q DAIL+G GT 
Sbjct: 135 WLGAVALGRPHVTLKFAQSLDGFTAAVDGSSQWITGEQAREHVHRDRTQRDAILIGTGTA 194

Query: 201 LADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           LAD+P LT R     L+   P R++        + S+ +                     
Sbjct: 195 LADNPSLTARFPDGSLRPQQPRRVV--------IGSRNVSHG------------------ 228

Query: 259 AFRKKNINII-YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
              K N+  + +      ++ L  L   G   +LVEGGA +A SF+    VD I  Y   
Sbjct: 229 --GKTNLERLGFEHYASPQEALAELYTTGARDILVEGGAGLATSFMELGFVDRIQAYIGN 286

Query: 318 IVIGEG 323
           +V+GEG
Sbjct: 287 VVLGEG 292


>gi|329768554|ref|ZP_08260041.1| riboflavin biosynthesis protein RibD [Gemella haemolysans M341]
 gi|328836595|gb|EGF86254.1| riboflavin biosynthesis protein RibD [Gemella haemolysans M341]
          Length = 356

 Score =  153 bits (386), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 111/324 (34%), Positives = 165/324 (50%), Gaps = 28/324 (8%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAGEEA 67
           FM+ AL  ++     T TNP V  +IVKD  ++ RG     GC HAE  A+   +  E+ 
Sbjct: 5   FMNLALLEAKRGAKYTHTNPLVGAIIVKDNKIVARGSHLRYGCEHAEKNAISTCKTPEKI 64

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
             +T YVTLEPC+H G+ PPC + I++ GI +VVV   DP+  VSG+G+++L   GI + 
Sbjct: 65  FNSTLYVTLEPCNHKGKQPPCTEAILKMGISKVVVAQLDPNPIVSGKGIKFLRDNGIEVT 124

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++E E     +AY     +KR ++ LK A S D  +         ITG    + V   
Sbjct: 125 TGILEKEAYNLNYAYNLFHTQKRPYVVLKQATSLDGKLAFTN-ERTQITGKEVYDFVRKE 183

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDP------HFKLSL---DSKII 237
           R    AILVG  TVL D+P+LT     L  + P RIILD       H +L+L   DS   
Sbjct: 184 RDNYQAILVGAKTVLIDNPKLTGASTSL--YPPKRIILDKEGTIFQHKELNLFKDDS--- 238

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                + VI+ ++  +  L       ++ II  +   +K++LT +   G+ S+ VEGG  
Sbjct: 239 -----SEVIVFSKYKNEDLP-----SHVTIITPNEFTIKEILTEIAKLGIQSVYVEGGPC 288

Query: 298 VAHSFINSRLVDSIILYRSQIVIG 321
           +   F+ S   D +I Y S  ++G
Sbjct: 289 IHDQFLASGYWDEVISYISPTLLG 312


>gi|239905200|ref|YP_002951939.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Desulfovibrio magneticus RS-1]
 gi|239795064|dbj|BAH74053.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Desulfovibrio magneticus RS-1]
          Length = 381

 Score =  153 bits (386), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 109/342 (31%), Positives = 170/342 (49%), Gaps = 37/342 (10%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE- 65
           DA FM+ AL  +    G  + NP V  ++V+DG ++  G     G PHAEV+ L EA E 
Sbjct: 6   DAVFMARALELAERGRGFVTPNPRVGAVLVRDGAIVAEGWHKVFGGPHAEVECLREAEER 65

Query: 66  --EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
             +  GAT YVTLEPC+H+G++PPC++ ++E G+ RVV+   DP+  V+G G + L Q G
Sbjct: 66  GIDPAGATMYVTLEPCNHFGKTPPCSRTVLEAGVSRVVIGCLDPNP-VAGGGAETLRQGG 124

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + VD  ++  E +  +  ++  +   R ++TLK+A++ D  I      S  ++G  S+ +
Sbjct: 125 VAVDVGILGQECRDAVADFVVYKTMGRPYVTLKLAMTLDGRIAARTGDSAWVSGPESRRR 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH +RA S A++VG GT  ADDP LT RL           ++DP         ++ T  L
Sbjct: 185 VHRMRAASQAVMVGGGTFRADDPRLTHRLE----------VVDPLSGNPQPLAVVVTRSL 234

Query: 243 APV----IIVTENDDPVLALA------------FRKKNINIIYCDCRDLKKL-----LTI 281
            P      +V E    ++ L               K+ + +     RD  +L     LT 
Sbjct: 235 PPADARFALVRERSPSLVFLTSEAEARAAAGLALAKRGVRVYGLPLRDEGELDLLPGLTR 294

Query: 282 LVGRG-VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
           L     V  LL EGG  +A   +   L D + L+ +  V+ +
Sbjct: 295 LRDEARVFRLLCEGGGGLAGQLVAQGLADELALFYAPKVLAD 336


>gi|313203842|ref|YP_004042499.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-aminO-6-(5-phosphoribosylamino)uracil reductase
           [Paludibacter propionicigenes WB4]
 gi|312443158|gb|ADQ79514.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Paludibacter propionicigenes WB4]
          Length = 360

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 103/322 (31%), Positives = 169/322 (52%), Gaps = 17/322 (5%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-EAR 68
           +M   L+ +   VG  + NP V  ++V +  +IG G     G  HAE  A+    E E  
Sbjct: 22  YMHRCLQLAELGVGYVAPNPMVGAVLVCNDKIIGEGYHHRYGEAHAEPNAINSVKEVELL 81

Query: 69  G-ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           G +T YV+LEPCSHYG++PPCA  I+  GI RVV+   DP+ +V+G+G+  L   G+ ++
Sbjct: 82  GQSTLYVSLEPCSHYGKTPPCADLIVSSGIPRVVIGTLDPNPKVAGKGVAKLRNAGVEVI 141

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG----SVPITGFISKNQ 182
             ++E E +     +   Q ++R ++ LK A ++D  +           + I+  I++  
Sbjct: 142 VGVLEEECRELNKRFFIFQEQRRPYVLLKWAQTRDGFMDRVRTDVSEPPLQISNNITRQL 201

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H +RA++ +ILVG  TVL D+P LT R       SP+RI +D   ++  +  ++  +L 
Sbjct: 202 THKMRAENQSILVGANTVLLDNPSLTVR--NWSGRSPVRIAIDRQRRIPDNFNLLDGSLQ 259

Query: 243 APVIIVTEND-DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
              I+ TE D +    + F K N      D   ++ +LT L  R + S+LVEGG  + +S
Sbjct: 260 T--IVFTEKDVENRPRIEFVKINF-----DSNSVETILTELYKRNIHSVLVEGGPTILNS 312

Query: 302 FINSRLVDSIILYRSQIVIGEG 323
           FI++   D   +  + + I EG
Sbjct: 313 FIDAGCWDEANIEIAPVRINEG 334


>gi|227503568|ref|ZP_03933617.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Corynebacterium accolens ATCC 49725]
 gi|227075604|gb|EEI13567.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Corynebacterium accolens ATCC 49725]
          Length = 344

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 124/343 (36%), Positives = 174/343 (50%), Gaps = 33/343 (9%)

Query: 23  GLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G TS NP V  +I+   G V+G G T   G  HAEV AL  AGE+ARG TA VTLEPC+H
Sbjct: 26  GTTSPNPPVGAVILSATGAVVGIGATQPVGGAHAEVMALRAAGEKARGGTAVVTLEPCAH 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG-KIFLHA 140
            GR+ PCA  +I+ GI RV     DP    +G G Q L+  G+ V R+   +G +  + A
Sbjct: 86  TGRTGPCATALIDAGIARVFYLHPDP-TPQAGGGAQALAAAGVEVGRLTAPDGVEDAVRA 144

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +L     +R H+TLK A + D     A   S  ITG  ++  VH  RA+ DAI++G GT 
Sbjct: 145 WLRAVKLQRPHVTLKFAQTLDGFTAAADGTSQWITGPKAREWVHADRARRDAIIIGTGTA 204

Query: 201 LADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           LAD+P LT R +   L+EH P R+++    K  L +   K + L               L
Sbjct: 205 LADNPSLTARFSDGSLREHQPRRVVIG---KRDLQAAGEKASHLQ-------------QL 248

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
            F + +          ++  L  L   G   +LVEGGA +A  FI +   D++  Y + I
Sbjct: 249 GFEQYDT---------IEGALKELYASGARDVLVEGGAGLAQGFIEAGAADALAAYIAPI 299

Query: 319 VIGEG-GIPSPLEEGYLEK--NFMCVRRDYFGSDVCLEYIGKN 358
           ++G+G G+ +      L    +F  VR    G DV +EY  +N
Sbjct: 300 LLGQGRGVLANAVAHTLADAPHFTTVRTTSLGPDVLIEYEARN 342


>gi|269795119|ref|YP_003314574.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Sanguibacter keddieii DSM 10542]
 gi|269097304|gb|ACZ21740.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Sanguibacter keddieii DSM 10542]
          Length = 393

 Score =  152 bits (385), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 102/288 (35%), Positives = 148/288 (51%), Gaps = 41/288 (14%)

Query: 51  GCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           G PHAE  AL  A   G + RGATA VTLEPC+H GR+ PCAQ +++ G+  VVV V DP
Sbjct: 91  GTPHAEADALARASASGVDVRGATAVVTLEPCNHTGRTGPCAQALLDAGVAEVVVSVGDP 150

Query: 108 DVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM 166
           +   SG G+  L   G+ V   ++  EG+  L  +LT     R  +TLK A S D  +  
Sbjct: 151 NPVASG-GMGHLRSHGVAVRTGLLADEGEELLRVWLTSVRAGRPFVTLKTATSLDGCVAA 209

Query: 167 AGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--------NGLQE-- 216
           A   S  ITG  S+   H +RA  DAILVG GT+LADDP LT R         +G+ E  
Sbjct: 210 ADGSSRWITGPQSRAHAHTVRATVDAILVGTGTLLADDPTLTARPPVPEGEVGDGVPEPA 269

Query: 217 -HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275
            H P+R+++     ++ D+++                        R  +   ++    D+
Sbjct: 270 VHQPLRVVVG-ERAVADDARV------------------------RGGDGRFVHLATHDV 304

Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            ++L  L    V  +LVEGG  VA +F+ + +VD I  Y + +++G+G
Sbjct: 305 HEVLARLAALEVRHVLVEGGPTVATAFVTAGVVDEIHSYVAPVLVGDG 352


>gi|89897925|ref|YP_515035.1| riboflavin biosynthesis protein [Chlamydophila felis Fe/C-56]
 gi|89331297|dbj|BAE80890.1| riboflavin biosynthesis protein [Chlamydophila felis Fe/C-56]
          Length = 377

 Score =  152 bits (385), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 155/306 (50%), Gaps = 8/306 (2%)

Query: 28  NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87
           NP V C+IVK+G +IG G     G PHAE +A+    E   G   YVTLEPC HYG +PP
Sbjct: 29  NPWVGCVIVKNGRIIGEGYHKKKGQPHAEEEAVNSTTESIEGCDVYVTLEPCCHYGSTPP 88

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQV 146
           C   +I+  +  V V + DPD RVSG+G+  L   GI +   + + E +  L +Y+ ++ 
Sbjct: 89  CVNLLIKHKVSTVYVALLDPDGRVSGKGIAALRNAGIRVYVGLGKEEAESSLKSYIYQRT 148

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             +  I +K A + D  +  +   S  IT   ++  V  +RA S AI++G  TVL DDP 
Sbjct: 149 YGKPWIVIKSAATLDGQVADSDGQSQWITCPEARADVGKIRASSQAIVIGSKTVLQDDPL 208

Query: 207 LTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
           LT R     L  + P+R+++D    +   +K+      +  +  T +    +        
Sbjct: 209 LTARKPSGELYSNQPLRVVVDSSGIVPPQAKVFHVPGKSLYVTTTRSSSEHIK-NIEDLG 267

Query: 265 INIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
           + ++    R    DL +L+  L  + V  +LVEGG+ +  SF+  RL ++++LY    + 
Sbjct: 268 VEVLVTQPRESKVDLHELVAYLSNKTVLQVLVEGGSILHTSFLKERLANALVLYLGPKIF 327

Query: 321 GEGGIP 326
           G+   P
Sbjct: 328 GDQRKP 333


>gi|29840652|ref|NP_829758.1| riboflavin biosynthesis protein RibD [Chlamydophila caviae GPIC]
 gi|29835002|gb|AAP05636.1| riboflavin biosynthesis protein RibD [Chlamydophila caviae GPIC]
          Length = 368

 Score =  152 bits (384), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 172/345 (49%), Gaps = 10/345 (2%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  A+            NP V C+IVK+G +IG G     G  HAE  A+        G
Sbjct: 11  FMRRAIELGEKGRFSAPPNPWVGCVIVKNGQIIGEGYHEKRGQLHAEENAINSTSVSVEG 70

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           +  YVTLEPC HYG +PPC   +I+  +  V V + DPD RV+G+G+  L + GI + + 
Sbjct: 71  SEVYVTLEPCCHYGNTPPCVNLLIKHKVSTVYVALLDPDSRVAGKGVASLKEAGIRVFEG 130

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + + E +  L +Y+ ++      + +K A + D     +   S  IT   ++  V  LRA
Sbjct: 131 LGKKEAEESLKSYIHQRTYGTPWVVIKSAATVDGQTADSHGKSQWITCPEARADVGKLRA 190

Query: 189 QSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
            S AI+VG  TVL D+P LT R     L  H P+R+++D    +   +KI  +   +  +
Sbjct: 191 SSQAIVVGSKTVLQDNPLLTAREPSGELYSHQPLRVVVDSLGNVGPQAKIFHSHGKSLYV 250

Query: 247 IVTE-NDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHS 301
             T+ + D + ++      ++I+  + RD    L KL++ L  + +  +LVEGG  +  +
Sbjct: 251 TTTQCSKDHIKSI--EDLGVDILVTEPRDSRVNLHKLMSYLATKQILQVLVEGGPVLHTA 308

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
           F+  RL +++++Y    + G+   P   + GY  ++   +   +F
Sbjct: 309 FLKERLANALVIYLGPKIFGDQRKPLFGDLGYQLQSAQKILPKFF 353


>gi|325478589|gb|EGC81701.1| riboflavin biosynthesis protein RibD [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 357

 Score =  152 bits (384), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 112/342 (32%), Positives = 165/342 (48%), Gaps = 22/342 (6%)

Query: 23  GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
           G   TNP V  ++ KDG +I RG        HAE+       E A GAT  V LEPCSH+
Sbjct: 19  GKVLTNPMVGAVLYKDGKIIARGYHKSYYDDHAEIDCFNNLNESAEGATLVVNLEPCSHF 78

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAY 141
           G+ PPC   +I   ++RVV+   D + +V   G+  L + GI ++  ++E EG+     +
Sbjct: 79  GKHPPCVDEVIRRKVKRVVISNTDTNPKVD--GISKLKEAGIEVITGVLEEEGEKLNEKF 136

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
                  R  + LK A S D  I      S  I+   S+  VH LR+  DAI+VG  T+ 
Sbjct: 137 FFNMKYNRPLVALKYAQSLDGKIATENFDSKWISNEESRLFVHKLRSDYDAIIVGRNTLE 196

Query: 202 ADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND----DPVL 256
            D+P LT R+ NG+    P R+I+    KL L  ++ K       II T +     + V 
Sbjct: 197 TDNPRLTSRITNGVD---PFRVIVTSKAKLDLGYEVFKENSDNKTIIATNSKIDLGEGVK 253

Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
            L  + KN ++      DL  LL  +    + S+LVEGG+ + +SF+ + LVD I  + +
Sbjct: 254 VLTLKDKNGSV------DLNDLLDRIYELNIGSVLVEGGSVLNNSFLEADLVDKIYQFMA 307

Query: 317 QIVI-GEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLE 353
            IV+ G+    + + +G       K F       FGSDV  E
Sbjct: 308 PIVVSGKNSRSAFVGKGAKLIKDAKRFRIDEIKRFGSDVMFE 349


>gi|325288196|ref|YP_004263986.1| riboflavin biosynthesis protein RibD [Cellulophaga lytica DSM 7489]
 gi|324323650|gb|ADY31115.1| riboflavin biosynthesis protein RibD [Cellulophaga lytica DSM 7489]
          Length = 350

 Score =  152 bits (384), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 107/341 (31%), Positives = 171/341 (50%), Gaps = 26/341 (7%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA- 67
           +++   ++ ++  +G T  NP V  LIV +  +IG G T+  G  HAEV A+    +++ 
Sbjct: 6   KYILRCIQIAKNGLGSTFPNPMVGALIVHNNAIIGEGFTSPYGGSHAEVNAINSIKDKSV 65

Query: 68  -RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            + +T YVTLEPCSHYG++PPCA  II+  I  +V+ + DP  +V+G G++ L   G  V
Sbjct: 66  LKESTIYVTLEPCSHYGKTPPCADLIIKHKIPNIVIGLKDPHEKVAGNGIKKLRAAGCNV 125

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG--MAGCGSVP----ITGFIS 179
              ++E E +   + +L    +KR +I LK A + D  I        + P    IT   +
Sbjct: 126 TIGVLEEECREHHNRFLCFYEKKRPYIILKWAETNDGFIAPLQEKRSATPEPFWITTKAA 185

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  VH  R++   ILVG  T++ D+P+L  R       SP RII+D + K+     I+ T
Sbjct: 186 RQLVHQWRSEEQGILVGTNTIIEDNPKLDVR--NWHGKSPTRIIIDQNLKIDASKNILNT 243

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL-----TILVGRGVTSLLVEG 294
           ++   VI    N +  L          IIY +  + KK L      IL    + S+++EG
Sbjct: 244 SVKTIVITKESNKNEQLQ--------GIIY-ESVNFKKPLAMQICNILHKHNILSVIIEG 294

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
           G+    +FIN  L D   ++       + GI +P   G L+
Sbjct: 295 GSKTLQTFINENLWDEARVFTGTTNFNK-GIAAPKFTGKLK 334


>gi|299530728|ref|ZP_07044143.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni S44]
 gi|298721244|gb|EFI62186.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni S44]
          Length = 362

 Score =  152 bits (384), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 105/322 (32%), Positives = 162/322 (50%), Gaps = 8/322 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
           M+ AL  +   + L+S NP V C+IV     +IG+G T   G PHAEV AL +A   G +
Sbjct: 1   MNKALEQAAQALFLSSPNPRVGCVIVDASDRIIGQGFTQQAGGPHAEVMALRDASAKGND 60

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            RGATAYVTLEPCSH+GR+ PC   +I  GI +VV  + DP+ +V+G+G + L   G+ V
Sbjct: 61  VRGATAYVTLEPCSHHGRTGPCCDALIAAGIGKVVGALTDPNPQVAGQGFERLRAAGVDV 120

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +     +E +     + +R +     + +K A S D +  +    S  IT   ++   H 
Sbjct: 121 EIGPGGAESRELNIGFFSRMIRGTPWVRMKAASSLDGVTALHNGQSQWITSAAARADGHA 180

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            RA++  IL GIGTVL D+P +  R +      P   ++D    + LD+ ++K      +
Sbjct: 181 WRARACTILTGIGTVLEDNPRMNVR-DVDTPRQPRIAVVDSKLDIPLDAHVLKAPSGCLI 239

Query: 246 IIVTENDDPVLAL-AFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
              +     +  L A     I +     + DL  +L  L  RG   L VE G  +  S I
Sbjct: 240 YTCSTKQSRIEELQALGATVIAMPNAAGKVDLAAMLRDLAARGTNELHVEAGFKLNGSLI 299

Query: 304 NSRLVDSIILYRSQIVIGEGGI 325
              LVD ++ Y++  ++G G +
Sbjct: 300 REGLVDELLFYQAPKLLGTGAM 321


>gi|315924110|ref|ZP_07920336.1| riboflavin biosynthesis protein RibD [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622512|gb|EFV02467.1| riboflavin biosynthesis protein RibD [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 374

 Score =  152 bits (384), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 108/326 (33%), Positives = 173/326 (53%), Gaps = 8/326 (2%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  AL  +R  +G TS NP V C++V++G+V+  G     G  HAE  AL    ++   
Sbjct: 16  FMRRALALARQGMGHTSPNPMVGCVVVQNGVVVAEGYHERVGGYHAERNALTHCEKDLSD 75

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           A  YVTLEPC HYG++PPC + IIE GI RV V   D + +V+GRG++ L   GI +V  
Sbjct: 76  ADLYVTLEPCCHYGKTPPCTEIIIERGIGRVFVGSLDVNPKVAGRGVKILEAAGIEVVTG 135

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++E++ +     +      +   +  K A++ D  I  A   +  ++G  S+ QV  +R 
Sbjct: 136 ILETKCRKLNEVFYHYMTMRTPFVVSKYAMTLDGKIACASGDAKWVSGEASRAQVQRMRK 195

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           Q   I+VGIGTV+ADDP L CR+    +  P+RI+ D +  + L S+I++TA   PVI+ 
Sbjct: 196 QYSGIMVGIGTVMADDPMLNCRIEAGVD--PVRIVCDSNLHIPLASRIVQTAGDIPVIVA 253

Query: 249 TENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
                   A A   +   +           DL  L+ +L  R + S+L+EGGA +  +  
Sbjct: 254 CTETAAASAKATALQAAGVTVLPAGDGTRVDLNILMRLLGRREIDSVLLEGGATLNAAAF 313

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPL 329
            + +V+ ++ + +  ++G    P P+
Sbjct: 314 EAGVVNKVVAFIAPKLVGGAAAPPPV 339


>gi|332662070|ref|YP_004444858.1| riboflavin biosynthesis protein RibD [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332330884|gb|AEE47985.1| riboflavin biosynthesis protein RibD [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 351

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 165/340 (48%), Gaps = 21/340 (6%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           R+++     +R   G  S NP V  ++V D  +IG G     G  HAEV AL       R
Sbjct: 7   RYITRCFDLARMGAGSVSPNPMVGAVLVYDNKIIGEGYHQKYGGAHAEVNALASVSLSNR 66

Query: 69  G----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                +T YV+LEPC  +G++PPC   II+  I RVV+   D    V GRG++ L   GI
Sbjct: 67  PLIPESTLYVSLEPCCIFGKTPPCTNLIIQEKIPRVVISCLDLTPEVKGRGVELLRAHGI 126

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++E EG+           ++R ++ LK+A++ +            IT  ++K  V
Sbjct: 127 EVTTGVLEKEGQALAATRNVSVSQQRPYVILKMAITSNGYFAPLDRSQFWITQTLTKRLV 186

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  R +SDAILVG  T L DDP+L  RL      SP+RI+LD   +L    K+       
Sbjct: 187 HRWRMESDAILVGTTTALMDDPQLDNRL--YYGKSPLRIVLDRRLQLPNSLKVFSDG--Q 242

Query: 244 PVIIVTENDDPVLALA-FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           P +I+TE +  + + +     ++N       DL  +L      GV  +LVEGG  V  S 
Sbjct: 243 PTLIITEREKSINSASHLHYLSMNFGETFWPDLLAILWREYKLGV--ILVEGGQKVLSSL 300

Query: 303 INSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNF 338
           I++ L D      ++++IG+     GIPSP   G  EKN 
Sbjct: 301 IDTGLWD-----EARVLIGQKSLTVGIPSPTLPGSPEKNL 335


>gi|145224309|ref|YP_001134987.1| riboflavin biosynthesis protein RibD [Mycobacterium gilvum PYR-GCK]
 gi|315444641|ref|YP_004077520.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. Spyr1]
 gi|145216795|gb|ABP46199.1| riboflavin biosynthesis protein RibD [Mycobacterium gilvum PYR-GCK]
 gi|315262944|gb|ADT99685.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. Spyr1]
          Length = 333

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/328 (34%), Positives = 161/328 (49%), Gaps = 57/328 (17%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M+AA+  S    G T  NP V  +I+  DG + G G TA  G PHAEV AL  AGE A G
Sbjct: 7   MAAAIVQSERVKGRTYPNPPVGAVILDSDGEIAGVGATAPTGGPHAEVVALRRAGERAAG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD--------------VRVSGRG 115
            TA VTLEPC+H+GR+PPC   +I+ G+  V   V DP+              VRVS   
Sbjct: 67  GTAVVTLEPCNHFGRTPPCVDALIDAGVAAVAFAVADPNPAAAGGAARLAAAGVRVS--- 123

Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
                  G++ D +     + +LH    +Q   + H+T K A S D     A   S  IT
Sbjct: 124 ------AGVVADAVTGGPLREWLH----KQRTGKPHVTWKFAASVDGRSAAADGTSQWIT 173

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLD 233
              S+  VH  RA +DAI+ G GTV ADDP LT RL    L +H P+R+++    ++S D
Sbjct: 174 SEASRADVHRRRAAADAIVAGTGTVFADDPALTARLPDGSLADHQPLRVVVG-MREISPD 232

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
           + ++             NDD              +    RD  +++  L  R  T +LVE
Sbjct: 233 ATVL-------------NDD-----------SRTMVIRTRDPHEVIQALTDR--TDVLVE 266

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG 321
           GG  +A +F+ +  +D I+ Y + I++G
Sbjct: 267 GGPTLAGAFLRAGAIDRILAYVAPILLG 294


>gi|332703475|ref|ZP_08423563.1| riboflavin biosynthesis protein RibD [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553624|gb|EGJ50668.1| riboflavin biosynthesis protein RibD [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 380

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/221 (39%), Positives = 129/221 (58%), Gaps = 7/221 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
           FM  AL  +    G T+ NP V  ++V+DG V+  G     G PHAE +A+ +A   G +
Sbjct: 7   FMRRALELAERCRGFTAPNPCVGAVLVRDGQVVAEGWHKIYGGPHAEREAIADARAKGVD 66

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
                 YVTLEPCSH+G++PPC + I+E GIRRV V   D +  V GRG ++L  KG+ V
Sbjct: 67  TSTCDMYVTLEPCSHHGKTPPCTEAILEAGIRRVFVGCKDLNPTVPGRGTEYLLSKGVQV 126

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  ++E E +  +  ++  + + R+  TLK+A++ D  IG        ++G  S  +V L
Sbjct: 127 ELGILEQECRDAIADFMLWKTQGRAWCTLKLAMTLDGRIGGPTGKPESVSGPESHRRVQL 186

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN---GLQEHSPMRII 223
           LRA+SDA+L+G GT+ ADDP LTCRL      Q   P+ I+
Sbjct: 187 LRARSDAVLIGGGTLRADDPRLTCRLQPEGNAQVKRPLAIV 227


>gi|306836172|ref|ZP_07469157.1| riboflavin biosynthesis protein RibD [Corynebacterium accolens ATCC
           49726]
 gi|304567955|gb|EFM43535.1| riboflavin biosynthesis protein RibD [Corynebacterium accolens ATCC
           49726]
          Length = 307

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/331 (35%), Positives = 168/331 (50%), Gaps = 32/331 (9%)

Query: 34  LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFII 93
           ++   G V+G G T   G  HAEV AL  AGE+ARG TA VTLEPC+H GR+ PCA  +I
Sbjct: 1   ILSATGAVVGIGATQPVGGAHAEVMALRAAGEKARGGTAVVTLEPCAHTGRTGPCATALI 60

Query: 94  ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG-KIFLHAYLTRQVEKRSHI 152
           + GI RV     D     +G G Q L+  G+ V R+   +G +  + A+L     +R H+
Sbjct: 61  DAGIARVFYLHPD-STPQAGGGAQALAAAGVEVGRLTAPDGVEDAVRAWLRAVKLQRPHV 119

Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN 212
           TLK A + D     A   S  ITG  ++  VH  RA+ DAI++G GT LAD+P LT R +
Sbjct: 120 TLKFAQTLDGFTAAADGTSQWITGPKAREWVHADRARRDAIIIGTGTALADNPSLTARFS 179

Query: 213 --GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270
              L+EH P R+++    K  L +   K + L               L F + +      
Sbjct: 180 DGSLREHQPRRVVIG---KRDLQAAGEKASHLQ-------------RLGFEQYDT----- 218

Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-GIPSPL 329
               ++  L  L   G   +LVEGGA +A SFI +  VD++  Y + I++G+G G+ +  
Sbjct: 219 ----IEGALKELYASGARDVLVEGGAGLAQSFIEAGAVDTLAAYIAPILLGQGRGVLANA 274

Query: 330 EEGYLEK--NFMCVRRDYFGSDVCLEYIGKN 358
               L    +F  VR    G DV +EY  +N
Sbjct: 275 VAHTLADAPHFTTVRTTSLGPDVLIEYEARN 305


>gi|312131512|ref|YP_003998852.1| riboflavin biosynthesis protein ribd [Leadbetterella byssophila DSM
           17132]
 gi|311908058|gb|ADQ18499.1| riboflavin biosynthesis protein RibD [Leadbetterella byssophila DSM
           17132]
          Length = 322

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 166/339 (48%), Gaps = 33/339 (9%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67
           +M  AL  +       S NP V C+IV +  +IG G     G PHAEV A++   +++  
Sbjct: 3   YMKRALELAALGREWVSPNPMVGCVIVHNDKIIGEGFHRKYGQPHAEVNAVDSVEDKSLL 62

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
             +T YVTLEPC+H+G++PPCA+ +I+  +++VVVC  DP  +V+G+G+  L   GI V+
Sbjct: 63  SESTVYVTLEPCAHFGKTPPCAELLIKHKVKKVVVCNLDPFPQVAGKGITMLKNAGIDVE 122

Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +++ EG+     +  R      ++ LK A S+D  I   G   + I+  I+  QVH  
Sbjct: 123 VGLLQEEGEELNKRFFKRHRTGLPYVILKWAESKDGFISAEGGKPIKISHPITDIQVHRW 182

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA+ DAIL+G  T   D+P+L  R    ++  P  IIL    +  L +K  K        
Sbjct: 183 RAEEDAILIGKNTADLDNPQLNVRY-WTEDKQPKPIILGQPTRQDLRAKGAK-------- 233

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
                                I+ + ++L ++L  L   G+ S+LVEGG  +  SFI   
Sbjct: 234 ---------------------IFPNGKNLTEILRQLAQDGIQSILVEGGTKIHTSFIEEG 272

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
           L D I + +  I I  G     L +G +  +    R D+
Sbjct: 273 LFDEIRVIQGDIEILNGVKAPQLPDGLILTDHHTYRNDH 311


>gi|260221154|emb|CBA29435.1| Riboflavin biosynthesis protein ribD [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 363

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/316 (33%), Positives = 156/316 (49%), Gaps = 19/316 (6%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR---GATAYVTLEPCSH 81
            + NP+V C++ KD   +G G T   G PHAEV AL +A E+     GATAYVTLEPCSH
Sbjct: 8   ANPNPNVYCVVFKDEYCLGLGHTQKAGGPHAEVMALRDAAEKGLSVVGATAYVTLEPCSH 67

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA- 140
           +GR+ PC   +I+ GI++VV    DP+  V+G G   L   G+ V+ ++ SE  + + + 
Sbjct: 68  HGRTGPCCDALIQAGIKKVVATNLDPNPLVAGNGFAKLRAAGVEVE-VLPSEHPLAIESR 126

Query: 141 -----YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195
                + +R + K   + +K+A S D    +    S  ITG  ++   H  RA+S AIL 
Sbjct: 127 ELNIGFFSRMIRKTPWVRMKVAASLDGTTALDNGVSQWITGPAARADGHAWRARSCAILT 186

Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
           GIGTVLAD P L  RL       P  +++D   +  LD+          +     ND   
Sbjct: 187 GIGTVLADRPRLDVRLVETPRQ-PHLVVVDSKLETPLDAPFFIAGRAVFIYAAAPNDAKR 245

Query: 256 LALAFRKKNINIIY-CDCR-------DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            AL      + I+   D         DL  ++  L  R +  L VE G  +  S +   L
Sbjct: 246 AALEAVGATVIIMPGIDANGQPTGKVDLAAMMQDLGRREINELHVEAGFKLNGSLVREGL 305

Query: 308 VDSIILYRSQIVIGEG 323
           VD  ++Y +  ++G+G
Sbjct: 306 VDEFVVYVAPRLLGQG 321


>gi|189464287|ref|ZP_03013072.1| hypothetical protein BACINT_00628 [Bacteroides intestinalis DSM
           17393]
 gi|189438077|gb|EDV07062.1| hypothetical protein BACINT_00628 [Bacteroides intestinalis DSM
           17393]
          Length = 345

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/351 (31%), Positives = 179/351 (50%), Gaps = 22/351 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + ++M   ++ ++      + NP V  +IV DG +IG G     G  HAEV A+    + 
Sbjct: 3   EEKYMRRCIQLAQNGFCNAAPNPMVGAVIVCDGKIIGEGYHVRCGEAHAEVNAIRSVKDT 62

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +  + +T YV+LEPCSH+G++PPCA  IIE  I R+V+   DP  +V+GRG+Q L   G 
Sbjct: 63  SLLKRSTIYVSLEPCSHHGKTPPCADLIIEKQIPRIVIGCQDPFSKVAGRGIQKLKDAGR 122

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181
            V   ++E+E +  +  ++T    +R +ITLK A S D  I +   G  P+  +  ++  
Sbjct: 123 EVTVGVLENECRHLIRRFITFHTLRRPYITLKWAESADGFIDLHRNGGSPVILSTPLTSM 182

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH  RA+  AILVG  T   D+P L  R       SP+R+++D    LS    +    +
Sbjct: 183 MVHKKRAEHAAILVGTRTAELDNPSLNVR--NWYGRSPVRLVIDRRLSLSPTLHLFDGNV 240

Query: 242 LAPVIIVTENDDPVL-ALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTSLLVEGGAAVA 299
             P ++ TE+    L  + +   N        +D L +++ +L  R + SLLVEGG+ + 
Sbjct: 241 --PTLVFTEHPHNSLPGVEYLPINFG------QDILPQIMQVLYERNLQSLLVEGGSTLL 292

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
            SFI++ L D   +  S I +   G+ +P      +KN   V   YFG  +
Sbjct: 293 QSFIDASLWDEAFVEESPIHL-TSGVNAPKMN---DKNSY-VNEQYFGRSI 338


>gi|163854921|ref|YP_001629219.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bordetella petrii DSM 12804]
 gi|163258649|emb|CAP40948.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bordetella petrii]
          Length = 380

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/322 (33%), Positives = 168/322 (52%), Gaps = 13/322 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
           +M  AL  +R  +  T+ NP V C+IV+DG V+G G T   G PHAE+ AL +A   GE 
Sbjct: 12  WMRRALALARTVMYTTTPNPRVGCVIVRDGRVLGEGATQPPGGPHAEICALRDAAARGES 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            +GAT YVTLEPCSHYGR+PPCA  +   G  RVVV + DP+ +V G+GL  L   GI V
Sbjct: 72  VQGATLYVTLEPCSHYGRTPPCADAVAAAGPARVVVAMGDPNPQVRGQGLARLRAAGIAV 131

Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +  +  + ++A ++ R         +K+A S D    +    S  ITG  ++   H 
Sbjct: 132 TSNVCLDEALEINAGFVARMSRGIPWAWVKMAASLDGRSALHNGVSQWITGEAARADGHA 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            RA+S  +L G+GTVL D+P L  R       +P + ++D  F +  D+++      A V
Sbjct: 192 WRARSCVVLTGMGTVLKDNPRLNVRAVE-TPRAPRKAVVDGDFAIPEDARLFDG---AEV 247

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAH 300
           II T   D   A     +N  ++    +     DL  ++  L       + VE GA +  
Sbjct: 248 IIFTARTDAGKAARLAARNARVVALPGQQAGRVDLPAMMRWLGEHEFNEVHVEAGAGLGG 307

Query: 301 SFINSRLVDSIILYRSQIVIGE 322
           + +++  +D +++Y + +++G+
Sbjct: 308 ALMSAGCIDELLVYLAPVLLGD 329


>gi|296129704|ref|YP_003636954.1| riboflavin biosynthesis protein RibD [Cellulomonas flavigena DSM
           20109]
 gi|296021519|gb|ADG74755.1| riboflavin biosynthesis protein RibD [Cellulomonas flavigena DSM
           20109]
          Length = 386

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 113/326 (34%), Positives = 163/326 (50%), Gaps = 35/326 (10%)

Query: 7   DARFMSAALR--FSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA 63
           DA    AA+R  F     G    NP V C+++ + G V+G G     G PHAEV AL +A
Sbjct: 32  DAAHELAAMRHAFGLAEQGPLGPNPRVGCVLLDRAGAVVGEGWHRGAGTPHAEVAALADA 91

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G + RGATA VTLEPC H GR+ PC+  +++ G+ RVVV V DP+   +G G Q L 
Sbjct: 92  RERGADVRGATAVVTLEPCDHTGRTGPCSVALLQAGVGRVVVSVQDPNPVAAG-GAQRLR 150

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             G+ +V  ++  EG   L A+L      R  +TLK+A S D     A   S  IT  ++
Sbjct: 151 AAGVDVVTGVLADEGTRTLGAWLPAVRRGRPFVTLKLAASLDGRAAAADGSSRWITSDVA 210

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKII 237
           +   H LRA+  AI+VG GT L DDP LT R     L EH P+R+++  H ++   +++ 
Sbjct: 211 RRHAHGLRAEVGAIVVGTGTALVDDPSLTARTGDGSLVEHQPLRVVVG-HREVPAGARL- 268

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                                  R     ++     D   +L  L  R V  +LVEGG  
Sbjct: 269 -----------------------RGPGGELVQVRTHDPAVVLAALHEREVRHVLVEGGPT 305

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323
           +A +F+ + LVD +  Y + +++G G
Sbjct: 306 LAAAFLAAGLVDEVHAYVAPVLLGAG 331


>gi|326331206|ref|ZP_08197500.1| riboflavin biosynthesis protein RibD [Nocardioidaceae bacterium
           Broad-1]
 gi|325950976|gb|EGD43022.1| riboflavin biosynthesis protein RibD [Nocardioidaceae bacterium
           Broad-1]
          Length = 352

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 150/305 (49%), Gaps = 34/305 (11%)

Query: 25  TSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYG 83
           T  NP V C+++  DG +I  G     G PHAEV AL +AGE ARGATA VTLEPC+H G
Sbjct: 28  TYPNPRVGCVLLGADGSMIAEGYHRGPGTPHAEVDALAKAGEAARGATAVVTLEPCNHTG 87

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT 143
           R+ PC+Q +IE G+ RVV    DP+   +G G   L Q G+ V++ + +     L+   T
Sbjct: 88  RTGPCSQALIEAGVARVVYAQSDPNPVAAG-GAATLKQAGVEVEQGLYAAEARELNRVWT 146

Query: 144 RQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
           R  E +R ++T K A + D     A   S  ++   ++   H LRA SD +LVG  TV  
Sbjct: 147 RAAELQRPYVTWKFATTLDGRSAAADGTSRWVSSRAARLDTHKLRALSDTMLVGTNTVAV 206

Query: 203 DDPELTCRLNGLQEH----SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           DDP LT R   L++      P+R+++     L  D +I                      
Sbjct: 207 DDPALTVR--DLEDRPVGVQPLRVVMG-ERDLPEDRRIFDA------------------- 244

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
                    ++   RD    L  L  R    + +EGG  +A +F+ + LVD I++Y +  
Sbjct: 245 -----QAPSLHLRTRDPHSALAALWERERRHVFLEGGPTLAAAFLEAGLVDEIVVYVAPF 299

Query: 319 VIGEG 323
           ++G G
Sbjct: 300 LLGAG 304


>gi|171779591|ref|ZP_02920547.1| hypothetical protein STRINF_01428 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281693|gb|EDT47127.1| hypothetical protein STRINF_01428 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 351

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/327 (34%), Positives = 168/327 (51%), Gaps = 20/327 (6%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EA 63
            D  +MS A+  ++     T TNP V  +IVKD  VI RG     G  HAE  A+   + 
Sbjct: 1   MDNYYMSQAIAEAKKGFRQTYTNPLVGAVIVKDNHVIARGAHLQYGHEHAEKNAILHCQT 60

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            EE   +T YVTLEPC H G+ PPC Q I+  GI++VVV   DP+  V+G+GL +L ++G
Sbjct: 61  PEELVDSTLYVTLEPCHHRGKQPPCTQAILAAGIKKVVVGQLDPNPLVAGKGLAFLKEEG 120

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +V  ++E E +     Y      +R ++ LK AVS D  I + G  +  +T   +   
Sbjct: 121 IEVVTGVLEEEARGLNSHYNFYYENQRPYVVLKQAVSLDGKIAVLGKRTA-LTDAETNRF 179

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  R    AILVG  TVL D+P L     G   +  +R+ILD   ++  + + ++    
Sbjct: 180 VHDERDDYQAILVGADTVLIDNPRLLGA--GTSLYPIVRVILDEAGRV-FERRDLQ---- 232

Query: 243 APVIIVTENDDPVLALAFRK-----KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
               I T++  P+L  +  K      ++ +I      +  +L +L    + S+ VEGGAA
Sbjct: 233 ----IFTDDSAPILIFSKHKVTDLPSHVKVIDLPEFSIANILRVLYDEKIQSVYVEGGAA 288

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGG 324
           V  +F++S L D II Y +  +IG  G
Sbjct: 289 VHDAFLDSGLWDEIISYVTPKLIGGNG 315


>gi|295424908|ref|ZP_06817620.1| riboflavin biosynthesis protein RibD [Lactobacillus amylolyticus
           DSM 11664]
 gi|295065347|gb|EFG56243.1| riboflavin biosynthesis protein RibD [Lactobacillus amylolyticus
           DSM 11664]
          Length = 347

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 175/339 (51%), Gaps = 10/339 (2%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGEEARGATAYVTLEPCSHYG 83
           T  NP V  +IVKD  V+  G   + G  HAE  A+ +   E+   +T YVTLEPC+H+G
Sbjct: 15  TWKNPLVGAVIVKDNHVLATGYHHHFGERHAERDAISKLTPEQLFNSTLYVTLEPCNHFG 74

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYL 142
           + PPC+Q I+   I+RVV+   DP   V+G+G+  L + GI +   ++ +E +     Y 
Sbjct: 75  KQPPCSQLIVNKHIKRVVIAQIDPHKLVTGKGIAALKENGIQVATGILANEARKLNEHYT 134

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
                 +  IT+K A+S D+ + +       IT  +   +VH  RA   AI++G  T + 
Sbjct: 135 YFYETNQPWITVKQAISLDHKVAVRTNQRTKITNDLVYQKVHSERADYQAIVIGSSTAII 194

Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALLAPVIIVTENDDPVLALAF 260
           D+P L   ++   ++SP+RI+LD   +L   LD K+  T   A   I TEN   + +  F
Sbjct: 195 DNPSLLTNVHT--DYSPIRIVLDRRGRLLKHLDLKLF-TDQKAQTWIFTENKS-LSSHPF 250

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
             K ++  +     +  ++  L  + + S+ VEGG  +  SF+++ LV+ +I Y +  ++
Sbjct: 251 NNKFVHCFFSKNDSIGAMINELKNQELQSIYVEGGPTLEKSFLDNYLVNELITYIAPDLL 310

Query: 321 GEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
           G  G+ +     +   +F  V+ D   ++V ++   +N+
Sbjct: 311 GANGVSAVSPSSF--HHFSDVKIDKLNNNVRIDERKQNV 347


>gi|323357080|ref|YP_004223476.1| pyrimidine reductase, riboflavin biosynthesis [Microbacterium
           testaceum StLB037]
 gi|323273451|dbj|BAJ73596.1| pyrimidine reductase, riboflavin biosynthesis [Microbacterium
           testaceum StLB037]
          Length = 343

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/322 (34%), Positives = 157/322 (48%), Gaps = 29/322 (9%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALE 61
            S+ +   M  AL+ +R   G    NP V  +I+   G ++  G     G  HAEV AL 
Sbjct: 2   ASAVEIDAMRRALQLARR--GPRGLNPQVGAVILSPAGEILAEGYHRGAGTAHAEVDALS 59

Query: 62  E-AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           + A   ARGATA VTLEPC+H GR+ PCA  +IE G+ RVV  +DDP    SG G + L 
Sbjct: 60  QLAPGAARGATAVVTLEPCNHTGRTGPCAVALIEAGVARVVFALDDPTDAASG-GAERLR 118

Query: 121 QKGIIVDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             G+ V++  E E  +  +H ++      R H+ +K A S D         S  ITG  +
Sbjct: 119 AAGVDVEQGPEEESAEALVHDWVALTRTGRPHVVVKWAQSLDGRAAADDGTSQWITGPAA 178

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  VH  RA +DAI+ G GTV ADDP LT R                      D  ++  
Sbjct: 179 RRDVHARRATADAIVAGTGTVRADDPALTAR--------------------DEDGSLLPA 218

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
             L PVII      P  A+  R+     ++    DL  +L  L  RG+  + VEGG  +A
Sbjct: 219 QPL-PVIIGESETAPDAAV--RRHPREPLFFATHDLSAVLADLGERGIQRVFVEGGPTLA 275

Query: 300 HSFINSRLVDSIILYRSQIVIG 321
            +F+ + L D +++Y + ++IG
Sbjct: 276 SAFVRADLADELLVYVAPVLIG 297


>gi|121595493|ref|YP_987389.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Acidovorax sp. JS42]
 gi|120607573|gb|ABM43313.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Acidovorax sp. JS42]
          Length = 366

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/309 (34%), Positives = 160/309 (51%), Gaps = 11/309 (3%)

Query: 24  LTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPC 79
           L++ NP V C+I   +G ++G+G T   G  HAEV AL +A   G + RGATAYVTLEPC
Sbjct: 17  LSNPNPRVGCVITDVNGNMLGQGFTQRAGASHAEVMALRDAAARGCDVRGATAYVTLEPC 76

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFL 138
           +H GR+ PC   +I+ GI  VV  + DP+  V+G+G   L   G+ V+     ++ +   
Sbjct: 77  AHQGRTGPCCDALIQAGIAHVVASIADPNPLVAGQGFARLRAAGVQVEVGPGGTQSRELN 136

Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIG 198
             + +R V     + +K A S D +  +A   S  IT   ++   H  RA++ A+L G+G
Sbjct: 137 IGFFSRMVRGIPWVRMKAAASLDGVTALANGTSQWITSPAARADGHAWRARACAVLTGVG 196

Query: 199 TVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           TVLADDP L  R        P  +I+D   +   ++++   A    V+I T   D   A 
Sbjct: 197 TVLADDPRLDVR-EIATPRQPHLVIVDSLLQTPANARLFDVADRR-VLIYTARPDAAGAA 254

Query: 259 AFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
           A R +   II         DL  LL  L   GV  L +E G  +  SF+   LVD ++LY
Sbjct: 255 ALRARGATIIELPNDQGKVDLPALLRNLAREGVNELHLEAGHKLNGSFLREGLVDELLLY 314

Query: 315 RSQIVIGEG 323
            + I++G+G
Sbjct: 315 LAPIMLGQG 323


>gi|126663421|ref|ZP_01734418.1| riboflavin biosynthesis protein RibD [Flavobacteria bacterium
           BAL38]
 gi|126624369|gb|EAZ95060.1| riboflavin biosynthesis protein RibD [Flavobacteria bacterium
           BAL38]
          Length = 346

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 167/329 (50%), Gaps = 14/329 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67
           ++   +  ++  +G T  NP V  +IV +  +IG G     G PHAEV A+    +++  
Sbjct: 7   YIKRCIELAKNGLGTTYPNPLVGSVIVYENKIIGEGWHKKAGEPHAEVNAVNSVKDKSLL 66

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           + AT YV+LEPCSH+G++PPC   II   I  VVV   DP  +V+G G++ L + G  V 
Sbjct: 67  KEATIYVSLEPCSHFGKTPPCCDLIIVNEIPNVVVGTVDPFAKVAGNGIKKLVESGKKVT 126

Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG---MAGCGSVPITGFISKNQV 183
             ++E E       + T   ++R +I LK A + +  I          + IT   S+  V
Sbjct: 127 VGILEDECNELNKRFFTFHQKQRPYIILKWAETANGFIAPISKEEKSPIWITNQYSRQLV 186

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  R +  AILVG  TVL D+P+L  R     E++P+R++LD   K+S +  +   +   
Sbjct: 187 HKWRTEEQAILVGTNTVLDDNPKLDAR--DFSENNPIRVVLDKSGKVSKNYHVKDNS--Q 242

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
             I +TE++    A        N I+ D   ++ +  IL    + S+++EGG     SFI
Sbjct: 243 KTIFITESEK--YASTENCNYENTIF-DVNLVRSICDILYKNNIQSIIIEGGTKTIQSFI 299

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
           ++ L D   ++R + +  + GI +P+  G
Sbjct: 300 DANLWDEAKVFRGKKIF-QNGIIAPIISG 327


>gi|50954248|ref|YP_061536.1| riboflavin-specific deaminase [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50950730|gb|AAT88431.1| riboflavin-specific deaminase [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 341

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/314 (35%), Positives = 159/314 (50%), Gaps = 28/314 (8%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE-AR 68
           M AALR +  +      NP V C+++  DG  I +G     G PHAE  AL +  E  AR
Sbjct: 7   MRAALRLAA-NGPAAGVNPRVGCVLLDADGRTIAKGFHRGAGTPHAEADALGKLPEGGAR 65

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           G TA VTLEPC+H+GR+ PC++ +++ G+ RVV  + DP  R  G G + L Q G+ +  
Sbjct: 66  GTTAVVTLEPCNHWGRTGPCSEALLDAGVARVVYGIADPGERSRG-GAERLRQGGVEVTG 124

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++ +E + FL  +LT     R HIT+K A S D     A   S  ITG  ++ +VH  R
Sbjct: 125 GVLAAEIEEFLDDWLTVARLGRPHITVKWASSLDGRTAAADGTSRWITGTAARQRVHEQR 184

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
             SDAI+VG GTVLADDP LT R                      D+  +      PV++
Sbjct: 185 EASDAIVVGTGTVLADDPSLTARG---------------------DAGELLPRQPTPVVV 223

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            T    P  A  FR     +I     DL +++  L  RG   + VEGG  ++ +F+ + L
Sbjct: 224 GTRAV-PGDAAVFRHPQ-PVIVEKTHDLVEVVADLHQRGFRRVYVEGGPTLSGAFVAAGL 281

Query: 308 VDSIILYRSQIVIG 321
           VD   +Y +  ++G
Sbjct: 282 VDEYAIYLAPSLLG 295


>gi|302517924|ref|ZP_07270266.1| riboflavin biosynthesis protein RibD [Streptomyces sp. SPB78]
 gi|302426819|gb|EFK98634.1| riboflavin biosynthesis protein RibD [Streptomyces sp. SPB78]
          Length = 364

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 115/327 (35%), Positives = 167/327 (51%), Gaps = 11/327 (3%)

Query: 22  VGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCS 80
           +G T  NP V C+++   G V G G     G PHAE+ AL  AGE ARG TA VTLEPC 
Sbjct: 21  LGRTRPNPVVGCVVLDASGEVAGSGWHQRAGGPHAEIHALRAAGERARGGTALVTLEPCD 80

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLH 139
           H GR+ PC++ +IE G+RRVV  V DP  + +G G       G+ ++  ++E E      
Sbjct: 81  HTGRTGPCSRALIEAGVRRVVHAVADPTDQATG-GADTQRAAGVDIEHGLLEREAADVNA 139

Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199
           A+LT     R H+T K A S D     A   S  IT   ++  VH LRA  DA+LVG GT
Sbjct: 140 AWLTAARLGRPHVTWKYAASLDGRTAAADGTSRWITSPEARADVHRLRATCDAVLVGSGT 199

Query: 200 VLADDPELTCR-LNGLQEHSPMRIILDPH-FKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
              DDP L  R + G  +  P+R++LD     +   ++++  A  AP ++   +D P  A
Sbjct: 200 ARTDDPHLAVRGIPGAPQ--PLRVVLDTEGTAVRGGARVLDDA--APTLVALADDAPAPA 255

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
                  +        DL  LL  L  R V  +L+EGGA +A +F+ +   D ++ Y + 
Sbjct: 256 HGAELLRLPRAARGGLDLTALLAALYARDVRGILLEGGARLAGAFVAAGYTDRVVGYLAP 315

Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           +++G G  P+ L +  +      +R D
Sbjct: 316 VLLGAG--PAALTDAGIPTLTAALRLD 340


>gi|319778563|ref|YP_004129476.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Taylorella
           equigenitalis MCE9]
 gi|317108587|gb|ADU91333.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Taylorella
           equigenitalis MCE9]
          Length = 379

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/328 (33%), Positives = 163/328 (49%), Gaps = 30/328 (9%)

Query: 24  LTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATA--YVTLEP 78
           L   NP V C+IV +  +IG G T   G  HAE+ AL++A   G E   A A  YVTLEP
Sbjct: 14  LPDPNPCVGCVIVHNDEIIGEGATQIAGSHHAEIMALKDARMRGHEDLIADAILYVTLEP 73

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD--RMMESEGKI 136
           CSH+GR+PPC   +I  GI+ VV+   DP+  V G G++ L   GI V+   M+E   ++
Sbjct: 74  CSHFGRTPPCTDALISNGIKHVVIASPDPNPIVGGNGIRILRSNGIKVEVGFMLEEVLEL 133

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
            L  + +R +     +  KIA S D  I +    S  IT   S+N  H  RA+S  +L G
Sbjct: 134 NL-GFFSRMIRGTPWVRTKIASSLDGRISLTNGQSKWITCEESRNDGHYWRARSSIVLTG 192

Query: 197 IGTVLADDPELTCR--------LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
            GTVLAD+P+L  R        L G+ +   + II  P   +  + K+     +A V   
Sbjct: 193 AGTVLADNPKLNVRHFNTPRAPLIGIVDRE-LNIITKPKLSIFSNPKVYVFGEMAKV--- 248

Query: 249 TENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
                  L L    +NI ++   C D     L +LL  L    V  + +E G+ +  SF 
Sbjct: 249 -----QDLGLVDLSENIELVGLGCLDDGKLNLSELLEFLNSLQVNEIHLEAGSGLNTSFY 303

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEE 331
            + L+D ++ Y++ +V+G    P  ++E
Sbjct: 304 EAGLIDELLWYQAPLVLGNCNSPFNIKE 331


>gi|123966659|ref|YP_001011740.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. MIT 9515]
 gi|123201025|gb|ABM72633.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. MIT 9515]
          Length = 368

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/323 (30%), Positives = 159/323 (49%), Gaps = 8/323 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE 61
           ++  D ++M  A+  +    G T+ NP V  +I+ K+G +I  G  +  G PHAE  A  
Sbjct: 4   INGIDIKWMKRAIYLASLGKGRTNPNPMVGAVILDKNGNLISEGFHSKSGMPHAEAMAFN 63

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
              + AR    YV LEPC H+G++PPC   II  GI++V V ++DPD RVSG+G++ L  
Sbjct: 64  NLKKNARDGILYVNLEPCCHHGKTPPCVDKIISFGIKKVFVSIEDPDKRVSGKGIKLLKD 123

Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI V   + E E      +++ R +   ++  LK A+S D  +G+    S  IT   S+
Sbjct: 124 SGIEVHLGLCEKESTELNKSFIHRNITNNAYGVLKWAMSMDGRVGLKNGKSKWITNKDSR 183

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
           + VH  RA  DAI++G  T+  DDP LT R  G +   P+R++      L   S      
Sbjct: 184 SLVHSHRACFDAIVIGGNTLRKDDPLLTSR--GRRNPEPLRVVFTKTLDLPEKSNFWDFN 241

Query: 241 LLAPVIIVTEN--DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
           L   +++   +  D   L        I  +  D   L  L  +L  +G  ++L E G  +
Sbjct: 242 LAKTLVVYDSSCADKNFLKRIPEGVEIEELSSDNPIL--LSNLLAKKGCNNVLWECGPKL 299

Query: 299 AHSFINSRLVDSIILYRSQIVIG 321
           A S I +  +  ++ + +  ++G
Sbjct: 300 ATSAIKAGCIQELMTFIAPKILG 322


>gi|257899304|ref|ZP_05678957.1| riboflavin specific deaminase [Enterococcus faecium Com15]
 gi|257837216|gb|EEV62290.1| riboflavin specific deaminase [Enterococcus faecium Com15]
          Length = 364

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 162/316 (51%), Gaps = 10/316 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE--AGEEA 67
           FM AA+  ++   G T TNP V   IVK+G +I  G   + G  HAEV A++   + EE 
Sbjct: 12  FMLAAIAEAKKGKGNTFTNPLVGAAIVKEGKLISLGAHLHYGESHAEVNAIQNCSSPEEL 71

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
             +T YVTLEPC+H G+ PPC Q I++ GI  VV+   DP+  V+G+G ++L + GI V 
Sbjct: 72  FNSTLYVTLEPCNHQGKQPPCTQAIVQSGITTVVIGQLDPNPLVAGKGREFLQKHGIKVI 131

Query: 128 RMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +E E    L+ +     E  R +ITLK AV+ D  I +       IT   + ++V   
Sbjct: 132 VGVEEEKCRALNPFYNHFFEMDRPYITLKQAVTLDGKISIKKGSRHSITSPKAISRVRKE 191

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-IKTALLAPV 245
           R +   I+VG  TVL D+P L      +    P+RI+LD   ++    ++ +     +PV
Sbjct: 192 RGEYQGIVVGSETVLVDNPHLLPDAENI--FPPVRIVLDRRGQILKSPELNLFQKTTSPV 249

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
            I TEN +  L   F   ++ I Y         +  +  +GV SL VEGGA +  +F+  
Sbjct: 250 WIFTENHE--LKEIF--PHVTIFYTPKFSFAFFIETMRKKGVQSLYVEGGAKIHDAFLAE 305

Query: 306 RLVDSIILYRSQIVIG 321
            L D +I Y +  + G
Sbjct: 306 SLWDEVISYIAPKLFG 321


>gi|227542162|ref|ZP_03972211.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227181991|gb|EEI62963.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 324

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 119/365 (32%), Positives = 163/365 (44%), Gaps = 52/365 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M AA+      VG    NP+V C +VK+G VI  G T   G PHAE+ AL  AGE+ARGA
Sbjct: 1   MDAAITAGEEAVGRARPNPAVGCALVKNGRVIATGSTQRVGGPHAEIMALRAAGEDARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           TAYVTLEPC+H GR+ PC+  ++E GI  VV    D     +  G  +L   G+ V+ + 
Sbjct: 61  TAYVTLEPCNHTGRTGPCSLALVEAGIATVVYLTPDTSTPEAAGGGDYLKSHGVEVEYLP 120

Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
            + G   L  +L  Q   R   T+K+A + D         S  ITG  ++   H  R++ 
Sbjct: 121 VAVGA--LTPWLFAQRNHRPMFTVKVAHTIDGYAAALDGTSQWITGETARAYAHRDRSRR 178

Query: 191 DAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILD----PHFKLSLDSKIIKTALLAP 244
           DAILVG GT LAD+P LT R     L E+ P +I+      P      ++  I+   L  
Sbjct: 179 DAILVGTGTALADNPSLTARREDGSLYENQPDKIVFGSRPVPRDYHLYETGFIQVDTLEE 238

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           ++ +  ND                                     +LVEGG  V  +   
Sbjct: 239 LVQLPYND-------------------------------------ILVEGGPGVLSTLFT 261

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIGKNL 359
           + LVD+I  Y +  V+G  GIP  +  G+       K F        G DV +       
Sbjct: 262 NDLVDTIHSYVASAVLG-AGIPL-ISTGWGTSIQDIKRFSRTDTINLGDDVLIVLERHGS 319

Query: 360 CLQEL 364
           CLQ L
Sbjct: 320 CLQGL 324


>gi|256851712|ref|ZP_05557100.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii
           27-2-CHN]
 gi|260661570|ref|ZP_05862482.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii
           115-3-CHN]
 gi|256615670|gb|EEU20859.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii
           27-2-CHN]
 gi|260547627|gb|EEX23605.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii
           115-3-CHN]
          Length = 352

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 109/345 (31%), Positives = 169/345 (48%), Gaps = 19/345 (5%)

Query: 7   DARFMSAALRFS---RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE- 62
           D +FM+ A+  +   R+H   T TNP V  ++VKDG V+  G     G  HAE  A+ + 
Sbjct: 5   DEQFMALAINSASKGRYH---TWTNPMVGAVVVKDGKVLATGYHHKYGDVHAERDAISKL 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
             E+   +T YVTLEPC+H G+ PPC+  II   I+RVV+   DP   V+G+G++ L   
Sbjct: 62  TPEQLFNSTLYVTLEPCNHTGKQPPCSDLIIASKIKRVVISEIDPHGLVTGKGIKKLRSH 121

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
            I V   ++  E K     Y      K  +I LK A+S D+         + ITG  +  
Sbjct: 122 NISVTTGVLTQEAKKLNKHYNFFYEHKMPYICLKQALSLDHKCSYPD-KRIQITGKAAYE 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           QVH  RA   AI++G  T L D+P L   +   Q+H P+RI+LD   +L   +  + +  
Sbjct: 181 QVHRERADYQAIMIGSSTALIDNPTLLTSVK--QDHPPIRIVLDRRGRLLNKNLALFSDK 238

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            A   + T+N    L       +I +       L+++L +L    V S+ VEGG  +  +
Sbjct: 239 HAQTWLFTQNTK--LTKFPYPPHIKVFLLHSGSLREVLQLLTQNNVQSIYVEGGPTLMKT 296

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-LEKNFMCVRRDY 345
           FI  +L   +I Y S   +G   +     +G+ + +N   ++ DY
Sbjct: 297 FIEEKLAQELITYFSPTFLGNNAL-----DGFEITENINLIKPDY 336


>gi|295692792|ref|YP_003601402.1| riboflavin biosynthesis protein ribd [Lactobacillus crispatus ST1]
 gi|295030898|emb|CBL50377.1| Riboflavin biosynthesis protein ribD [Lactobacillus crispatus ST1]
          Length = 352

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 106/321 (33%), Positives = 166/321 (51%), Gaps = 6/321 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGE 65
           D  +M+ AL  ++     T  NP V  +IVK+G V+  G   + G  HAE  A+ +   E
Sbjct: 4   DTFYMNLALEEAKKGRYQTWKNPMVGAVIVKNGQVLATGYHHHYGQNHAERDAISKLTPE 63

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +   +T YVTLEPC+HYG+ PPC+  II+ GI+RVVV   DP   V+G+G+  L + GI 
Sbjct: 64  QLFNSTLYVTLEPCNHYGKQPPCSDLIIKSGIKRVVVGQIDPHKLVTGKGIAQLQKNGIQ 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   + ++    L+ + +   +     IT+K A S DN + M G    PIT      QVH
Sbjct: 124 VTTGVLADDASKLNKFYSYFYQYGFPWITVKEATSLDNKVAMRGQ-RTPITNQAVYQQVH 182

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             RA   AI++G  T + DDP L  R N   ++ P+RII+D   +L    ++   +   P
Sbjct: 183 SERADYQAIMIGSSTAIIDDPIL--RTNVKSDYPPIRIIIDRRGRLLNHLRLRLLSDTNP 240

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
             I T+N   +    F    I II+     ++++   L  + + S+ VEGG  +  + +N
Sbjct: 241 TWIFTQNKQ-MSKNNFTNSKIKIIHLATNKIQEVFDYLSTKEIQSVYVEGGPTLEKAIMN 299

Query: 305 SRLVDSIILYRSQIVIGEGGI 325
              V+ +I Y + I +G+ G+
Sbjct: 300 EIFVNEVIKYTAPIFLGDEGV 320


>gi|282933540|ref|ZP_06338910.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 208-1]
 gi|297205330|ref|ZP_06922726.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii
           JV-V16]
 gi|281302283|gb|EFA94515.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 208-1]
 gi|297149908|gb|EFH30205.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii
           JV-V16]
          Length = 351

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 109/345 (31%), Positives = 169/345 (48%), Gaps = 19/345 (5%)

Query: 7   DARFMSAALRFS---RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE- 62
           D +FM+ A+  +   R+H   T TNP V  ++VKDG V+  G     G  HAE  A+ + 
Sbjct: 4   DEQFMALAINSASKGRYH---TWTNPMVGAVVVKDGKVLATGYHHKYGDVHAERDAISKL 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
             E+   +T YVTLEPC+H G+ PPC+  II   I+RVV+   DP   V+G+G++ L   
Sbjct: 61  TPEQLFNSTLYVTLEPCNHTGKQPPCSDLIIASKIKRVVISEIDPHGLVTGKGIKKLRSH 120

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
            I V   ++  E K     Y      K  +I LK A+S D+         + ITG  +  
Sbjct: 121 NISVTTGVLTQEAKKLNKHYNFFYEHKMPYICLKQALSLDHKCSYPD-KRIQITGKAAYE 179

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           QVH  RA   AI++G  T L D+P L   +   Q+H P+RI+LD   +L   +  + +  
Sbjct: 180 QVHRERADYQAIMIGSSTALIDNPTLLTSVK--QDHPPIRIVLDRRGRLLNKNLALFSDK 237

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            A   + T+N    L       +I +       L+++L +L    V S+ VEGG  +  +
Sbjct: 238 HAQTWLFTQNTK--LTKFPYPPHIKVFLLHSGSLREVLQLLTQNNVQSIYVEGGPTLMKT 295

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-LEKNFMCVRRDY 345
           FI  +L   +I Y S   +G   +     +G+ + +N   ++ DY
Sbjct: 296 FIEEKLAQELITYFSPTFLGNNAL-----DGFEITENINLIKPDY 335


>gi|332519663|ref|ZP_08396127.1| riboflavin biosynthesis protein RibD [Lacinutrix algicola 5H-3-7-4]
 gi|332044222|gb|EGI80416.1| riboflavin biosynthesis protein RibD [Lacinutrix algicola 5H-3-7-4]
          Length = 321

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 107/332 (32%), Positives = 162/332 (48%), Gaps = 35/332 (10%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--R 68
           M  A++ +   +G T  NP V  +IV + I+IG G T+  G  HAEV A+     +   +
Sbjct: 1   MQRAIQIANNGLGTTRPNPMVGAVIVHNNIIIGEGFTSAYGGNHAEVNAINAVKNKDLLK 60

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV-CVDDPDVRVSGRGLQWLSQKGIIVD 127
            +T YVTLEPCSHYG++PPC+  II   I  VV+ CVDD +  V+G+G++ L      V 
Sbjct: 61  KSTLYVTLEPCSHYGKTPPCSDLIIHHNIPNVVIGCVDD-NPEVAGKGIKKLMGANCKVT 119

Query: 128 R-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG---MAGCGSVPITGFISKNQV 183
             ++E++ K     + T   +KR +I LK A + +  I          V IT  IS+  V
Sbjct: 120 LGILENKCKEHHKRFFTFHNKKRPYIILKWAETSNGYIAPKTRTEQKPVWITNKISRQLV 179

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  RAQ  AILVG  TV+ D+P L  R      ++P RI+LD            K  LL+
Sbjct: 180 HKWRAQEQAILVGTTTVIKDNPTLNVR--DWSGNNPTRIVLD------------KNNLLS 225

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
               +  N+     +  +  N            ++ + L  + + S+++EGGA     FI
Sbjct: 226 KEYTIFNNEAETFTIKAQTAN------------EICSFLFKQTINSVIIEGGAKTLQLFI 273

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
           N  L D   +++  I   + GI +P   G L+
Sbjct: 274 NENLWDEARVFKGNITFTD-GIKAPNFSGELK 304


>gi|148272143|ref|YP_001221704.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
 gi|147830073|emb|CAN01002.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
          Length = 356

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 108/299 (36%), Positives = 145/299 (48%), Gaps = 31/299 (10%)

Query: 28  NPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE-AGEEARGATAYVTLEPCSHYGRS 85
           NP V C+I+   G VI  G     G  HAEV AL +     ARG+TA VTLEPC+H GR+
Sbjct: 41  NPRVGCVILDARGRVIAEGRHRGAGSAHAEVDALRQLPAGAARGSTAVVTLEPCNHTGRT 100

Query: 86  PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTR 144
            PCA  +IE G+ RV   V DP V  SG G   L   GI ++D ++  E   FL  +L  
Sbjct: 101 GPCAAALIEAGVARVAYAVADPGVESSG-GAARLRAAGIEVIDGVLADEAAAFLRVWLGS 159

Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
               R  +T K A S D  I  A   S  ITG  ++  VH  RA++DAILVG GTVLADD
Sbjct: 160 ARLGRPFVTAKWASSLDGRIAAADGTSRWITGPAAREDVHRRRAEADAILVGTGTVLADD 219

Query: 205 PELTCRL-NGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
           P LT R  +G+   H P  ++L        D  I   A                  A  +
Sbjct: 220 PALTARRPDGIPYPHQPAPVVLG-------DRAIPDDA------------------AVHR 254

Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
               +I     D    +  L  RG+  + VEGG  +  + + + LVD ++ Y + +++G
Sbjct: 255 HPRRLIRITGHDPAAAIAELGRRGIRHVFVEGGPTIVSALVAAGLVDEVVAYLAPVLLG 313


>gi|170783175|ref|YP_001711509.1| riboflavin biosynthesis protein RibD [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169157745|emb|CAQ02947.1| riboflavin biosynthesis protein RibD [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 355

 Score =  149 bits (377), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 107/299 (35%), Positives = 143/299 (47%), Gaps = 31/299 (10%)

Query: 28  NPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE-AGEEARGATAYVTLEPCSHYGRS 85
           NP V C+I+   G VI  G     G  HAEV AL +     ARGATA VTLEPC+H GR+
Sbjct: 40  NPRVGCVILDASGRVIAEGRHRGAGSAHAEVDALRQLPAGGARGATAVVTLEPCNHTGRT 99

Query: 86  PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTR 144
            PCA  ++E G+ RV   V DP    SG G   L   G+ +V  ++  E   FL  +L  
Sbjct: 100 GPCAAALVEAGVARVAYAVADPGAESSG-GAARLRAAGVEVVPGVLADEAAAFLQVWLGS 158

Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
               R  +T K A S D  I  A   S  ITG  ++  VH  RA++DAILVG GTVLADD
Sbjct: 159 ASLGRPFVTAKWASSLDGRIAAADGSSRWITGTAAREDVHRRRAEADAILVGTGTVLADD 218

Query: 205 PELTCRL-NGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
           P LT R  +G+   H P  ++L        D  I   A                  A  +
Sbjct: 219 PALTARRPDGIPYPHQPAPVVLG-------DRAIPDDA------------------AVHR 253

Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
               +I     D    L  L  RG+  + VEGG  +  + + + LVD ++ Y + +++G
Sbjct: 254 HPRRLIRLPGHDPAAALDELGNRGIRHVFVEGGPTIVSALLAAGLVDEVVAYLAPVLLG 312


>gi|154250091|ref|YP_001410916.1| riboflavin biosynthesis protein RibD [Fervidobacterium nodosum
           Rt17-B1]
 gi|154154027|gb|ABS61259.1| riboflavin biosynthesis protein RibD [Fervidobacterium nodosum
           Rt17-B1]
          Length = 365

 Score =  149 bits (377), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 105/319 (32%), Positives = 159/319 (49%), Gaps = 10/319 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE---EAGE 65
           RFM  A+  ++  +G  + NP V  +IVKDG ++  G   Y G  HAE  A+     AG 
Sbjct: 12  RFMKLAIVIAKKGIGFVNPNPPVGAVIVKDGKILSMGYHKYYGGYHAERDAILSALNAGI 71

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +  G+T YVTLEPC HYG++PPC   II+ GI+ V +   DP+  +SG G + L + G+ 
Sbjct: 72  DISGSTMYVTLEPCDHYGKTPPCTDLIIQSGIKEVYIACTDPN-PISGNGAEKLRKNGVD 130

Query: 126 VDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   +  E    L  +  + VE    ++TLK A + D  I      S  IT  + K  VH
Sbjct: 131 VHIGLLEEEARELAKFFFKSVETGIPYVTLKYAATLDGKIADVNGNSKWITDELRK-VVH 189

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR++  A+LVG GTV+ D+P L  R    ++ +P++++LD    +    K +       
Sbjct: 190 KLRSEHMAVLVGAGTVIKDNPTLNVRFLKSKKRNPIKVVLDKRGVIFEKIKDLNVFQGEK 249

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           VI+ TE    V A      N   I+     ++ L T+     V S+LVEGG+ +   F+ 
Sbjct: 250 VIVFTEKQ--VSAPELNGVNGVKIFNVLEPIEILKTLYKEERVDSVLVEGGSEIFSQFL- 306

Query: 305 SRLVDSIILYRSQIVIGEG 323
               D I  +     +G+G
Sbjct: 307 -PFADEIYGFYGLKALGKG 324


>gi|281357052|ref|ZP_06243542.1| riboflavin biosynthesis protein RibD [Victivallis vadensis ATCC
           BAA-548]
 gi|281316610|gb|EFB00634.1| riboflavin biosynthesis protein RibD [Victivallis vadensis ATCC
           BAA-548]
          Length = 346

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 122/358 (34%), Positives = 173/358 (48%), Gaps = 37/358 (10%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL---EEA 63
           D +FM  AL  +R   GLTS NP V  +IV+DG +IGRG     G PHAE+ AL   E+ 
Sbjct: 8   DQKFMLEALALARMGWGLTSPNPMVGAVIVRDGEIIGRGYHCKAGEPHAEINALIDVEKH 67

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G +A+GAT YVTLEPCS  GR+P C   I   GI RVV+   DP+ + +GRG+Q L + G
Sbjct: 68  GLDAKGATIYVTLEPCSTVGRTPACTDAIRAAGISRVVIGSLDPNPKHAGRGVQLLEEAG 127

Query: 124 IIVDRMMESE--GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           I V   +E    G+I    +       R  + LK+A++ D  I  A   S  ITG  ++ 
Sbjct: 128 IQVTVGVERAACGEIN-RPFFKWITTGRPFVILKMAMTLDGKIATADGESKWITGPDARR 186

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +V  LR  SDAI+VG  TV  D P LT R        P+R+I                  
Sbjct: 187 RVQQLRRLSDAIMVGGETVRQDRPLLTVREPDSWPCQPLRLIASRSM------------- 233

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC-RDLKKLLTILVGRGVTSLLVEGGAAVAH 300
                     D+  L   F   N  ++  +   D  +LL  L  R +T LL+EGG  +A 
Sbjct: 234 ----------DEEELEEYFPDGNAELVRLESEEDWGRLLDELGKREITCLLIEGGGELAA 283

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEG------YLEKNFMCVRRDYFGSDVCL 352
           S + +  VD +  + +  ++G G    P+  G       L +    V+  ++G D+ +
Sbjct: 284 SALQAWAVDYVEFHIAPKLLG-GRDSRPVLGGDNPDSMALAQQLHRVKVTHYGEDIAI 340


>gi|227893613|ref|ZP_04011418.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Lactobacillus ultunensis DSM 16047]
 gi|227864473|gb|EEJ71894.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Lactobacillus ultunensis DSM 16047]
          Length = 352

 Score =  149 bits (376), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 106/340 (31%), Positives = 167/340 (49%), Gaps = 23/340 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGE 65
           D  +M+ AL+ ++     T  NP V  +IVK+  V+  G   + G  HAE  A+ +   E
Sbjct: 4   DQYYMNLALQEAKKGRFQTWKNPMVGAVIVKNNQVLATGHHIHYGQNHAERDAISKLTPE 63

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +   +T YVTLEPC+HYG+ PPC+  I++  I+RVV+   DP   V+G+G+  L    I 
Sbjct: 64  QLFNSTLYVTLEPCNHYGKQPPCSDLIVKSKIKRVVIGQVDPHKLVTGKGIAKLKSHNIE 123

Query: 125 ----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
               ++   +E   K + + Y       +  IT+K A S D  +         IT     
Sbjct: 124 VKTGVLTSKIEELNKFYNYFYRN----NKPWITIKEATSLDYRVSQNKNTRTNITNQSVY 179

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIK 238
            +VH  RA   AI++G  T + DDP L   +    ++ P+R+I+D   +L   LD K++ 
Sbjct: 180 FRVHQERANYQAIMIGSSTAIIDDPSLLTSVKT--DYPPIRVIVDRRGRLLNHLDLKVL- 236

Query: 239 TALLAPVIIVTENDDPVLALAFRKK---NINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
           T   +   I T+N D +     RKK   NI ++     +L +++  L  R + S+ VEGG
Sbjct: 237 TDHQSLTWIFTQNKDLI-----RKKFNDNIQVLLMKSNELSEVVNKLAQREIQSIYVEGG 291

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
             +A SF+N  L + +I Y +   +G  G    L  G L 
Sbjct: 292 PTLARSFLNEDLANELIDYIAPTFLGSAGPAGVLPRGNLN 331


>gi|326780548|ref|ZP_08239813.1| riboflavin biosynthesis protein RibD [Streptomyces cf. griseus
           XylebKG-1]
 gi|326660881|gb|EGE45727.1| riboflavin biosynthesis protein RibD [Streptomyces cf. griseus
           XylebKG-1]
          Length = 366

 Score =  149 bits (376), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 178/347 (51%), Gaps = 13/347 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++ D   M  A+  +   +G TS NP V C+I    G V G G     G PHAEV AL  
Sbjct: 3   TAADITAMRRAITLAARGLGSTSPNPVVGCVITDAAGAVAGEGFHQRAGGPHAEVHALRA 62

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  ARG TAYVTLEPC H GR+ PC+Q ++  GI RVV  V DP+   +G G   L   
Sbjct: 63  AGGRARGGTAYVTLEPCDHTGRTGPCSQALLAAGISRVVYAVADPNPGAAGGG-DTLRHA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+  +  ++  E +    A+LT     R ++  K A + D  I  A   S  IT   ++ 
Sbjct: 122 GVRAEGGLLADEAEAGNAAWLTSVRRGRPYVMWKYAATLDGRIAAADATSRWITSPEARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPH-FKLSLDSKIIKT 239
            VH LRA++DA+LVG GT   DDP+L  R ++G  +  P+R+++D +   +   ++++  
Sbjct: 182 DVHRLRAEADAVLVGSGTARTDDPQLAVRGIDGATQ--PLRVVVDTNATAVKPGARVLDA 239

Query: 240 ALLAPVIIVTENDDPVLALAFRK--KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
              AP ++   +D P   L      +          DL  LL  L  RGV S+L+EGG  
Sbjct: 240 --TAPTLVAVADDAPAGHLPEPAVLRLPRAATGPGLDLDALLGALHERGVRSVLLEGGPT 297

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           +A +F+ +  VD ++ Y + +++G G  P+ L +  +      +R D
Sbjct: 298 LAGAFVAAGKVDKVVGYLAPVLLGAG--PAALADAGISTIAGALRLD 342


>gi|19552809|ref|NP_600811.1| pyrimidine reductase [Corynebacterium glutamicum ATCC 13032]
 gi|62390479|ref|YP_225881.1| bifunctional riboflavin-specific deaminase/reductase
           [Corynebacterium glutamicum ATCC 13032]
 gi|21324366|dbj|BAB98990.1| Pyrimidine reductase, riboflavin biosynthesis [Corynebacterium
           glutamicum ATCC 13032]
 gi|41325816|emb|CAF21605.1| PUTATIVE BIFUNCTIONAL RIBOFLAVIN-SPECIFIC DEAMINASE/REDUCTASE
           [Corynebacterium glutamicum ATCC 13032]
          Length = 328

 Score =  149 bits (375), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 114/342 (33%), Positives = 167/342 (48%), Gaps = 41/342 (11%)

Query: 23  GLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G TS NP V  +I+  DG V+G G TA  G PHAEV AL  AG  A G TA VTLEPC+H
Sbjct: 19  GTTSPNPPVGAVILDADGEVVGVGATAPPGGPHAEVVALAAAGVRANGGTAVVTLEPCNH 78

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
           YGR+ PC++ +++ GI  V     DP    +G G  +L++ G  VD     E    L  +
Sbjct: 79  YGRTGPCSKALLDAGIAHVFYANADPFPSAAGGG-AFLAEAG--VDTHFLDERIRALEPW 135

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
           L      R H+TLK A + D   G     S  ITG  ++  VH  R++ DAI+VG GT L
Sbjct: 136 LVATRLGRPHVTLKFASTVDGFAGATDGTSQWITGPDARAFVHEDRSKRDAIIVGTGTAL 195

Query: 202 ADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
            D+P LT R + GL E+ P R+++    ++  DS + +                      
Sbjct: 196 TDNPSLTARTDTGLYENQPRRVVIGSR-EVPADSNLAR---------------------- 232

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
                 + Y     + + L+ L  +G   +L+EGG  +A + +   +VD +  Y +  ++
Sbjct: 233 ------LGYEQYAGIPEALSALWDKGCRDILIEGGPTLAGAALRLGIVDQVQAYVAPALL 286

Query: 321 GEGG--IPSPLE---EGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           G G   I  P E   +  +  +   VR+   GSDV +E + K
Sbjct: 287 GAGRSVINWPQETTMDQIMRFDTTSVRQ--LGSDVLIEMMRK 326


>gi|121997691|ref|YP_001002478.1| riboflavin biosynthesis protein RibD [Halorhodospira halophila SL1]
 gi|121589096|gb|ABM61676.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Halorhodospira halophila SL1]
          Length = 371

 Score =  149 bits (375), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 106/308 (34%), Positives = 161/308 (52%), Gaps = 11/308 (3%)

Query: 28  NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87
           NP V C++V+DG V+        G PHAE  AL+ AG  A GATAYVTLEPC+HYGR+PP
Sbjct: 31  NPRVGCVLVRDGSVLAEAAHEQAGGPHAEAAALQAAGGAAHGATAYVTLEPCAHYGRTPP 90

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQV 146
           CA+ +I+ G+ RVVV   DP+ RV+G G+  L   G+ + + ++ ++ +     +L R  
Sbjct: 91  CARALIDAGVSRVVVGHRDPNPRVAGGGIAQLEAAGVAVTEGVLAADAEALNRGFLRRMA 150

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             R  + +K+A S D    MA   S  IT   ++  VH  RA++ A+L G+GTV ADDP 
Sbjct: 151 GGRPWVRVKLAASLDGRTAMASGESHWITSAAARRDVHRGRAEAAAVLTGVGTVRADDPR 210

Query: 207 LTCR---LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII-VTENDDPVLALAFRK 262
           L  R        E  P R++LDP       + + +     PV+I   E  +   A A R 
Sbjct: 211 LDARDVEPAVPAERQPQRVVLDPRLTTPPHAALFQAP--GPVLIGHAEYVNEARARALRS 268

Query: 263 KNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
               ++    ++    L  +L  L  R +  + VE G  +A S++     D +I+Y +  
Sbjct: 269 CGAELLPLPLQEGGLDLAAVLDALAAREINEVWVEAGPTLAGSWVRGGWADELIVYTAPH 328

Query: 319 VIGEGGIP 326
           ++G+   P
Sbjct: 329 LMGDAARP 336


>gi|300812786|ref|ZP_07093184.1| riboflavin biosynthesis protein RibD [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300496238|gb|EFK31362.1| riboflavin biosynthesis protein RibD [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 351

 Score =  149 bits (375), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 107/321 (33%), Positives = 159/321 (49%), Gaps = 10/321 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGE 65
           D  +M  A+  +R     T  NP V   +VKDG V+  G   + G  HAE   + +   E
Sbjct: 4   DEEYMRLAIAAARKAGNATWRNPRVGSCLVKDGKVLATGFHQHYGGFHAERDTISKLTPE 63

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +   +T YVTLEPC HYG+ PPC Q II+ GI+RVVV   DP   V+G+G+  L Q G+ 
Sbjct: 64  QLSNSTIYVTLEPCCHYGKQPPCTQLIIDSGIKRVVVGATDPHSLVTGKGIAALRQAGLE 123

Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   ++  E       Y         ++TLK A++ D+M+   G  +  ITG  +  +VH
Sbjct: 124 VSTGLLAKEASQLNDHYNYFYQTGLPYVTLKQAMTLDHMLAKKGERTA-ITGAEAWTRVH 182

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALL 242
             RA   A+L+G  T + DDP L    + +  H P+R++LD   +L   LD ++      
Sbjct: 183 QERAGYQAVLIGSETAIIDDPLLLTSEDLV--HPPVRVVLDRRGRLLEHLDLRLFSDK-R 239

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           A   I+TEN  P        K + I       +   + IL  +GV S+  EGGA +  S 
Sbjct: 240 AETWILTEN--PDFLEQDMPKQVKIFALPDGKISTSIKILADQGVQSVYAEGGAHLQESL 297

Query: 303 INSRLVDSIILYRSQIVIGEG 323
           + + LV+ +I Y +   +G G
Sbjct: 298 LAAGLVNDVISYVAPRFLGRG 318


>gi|160900631|ref|YP_001566213.1| riboflavin biosynthesis protein RibD [Delftia acidovorans SPH-1]
 gi|160366215|gb|ABX37828.1| riboflavin biosynthesis protein RibD [Delftia acidovorans SPH-1]
          Length = 369

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/324 (33%), Positives = 161/324 (49%), Gaps = 12/324 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
           M  AL  +   + L+S NP V C L+  DG V+G+G T   G PHAEV AL +A   GE+
Sbjct: 8   MHQALGLAAQALFLSSPNPRVGCVLVAPDGRVVGQGFTQQAGGPHAEVMALRDAVARGED 67

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            RGATAYVTLEPCSH GR+ PC   +I  G+ +VV  + DP+ +V+G+G   L   G+ +
Sbjct: 68  VRGATAYVTLEPCSHQGRTGPCCDALIAAGVAKVVGALTDPNPQVAGQGFARLRAAGVDV 127

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V      E +     + +R +     + +K A S D    +    S  IT   ++   H 
Sbjct: 128 VVGPGADESRELNIGFFSRMLRGIPWVRMKAASSLDGATALHNGTSQWITSPEARADGHA 187

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            RA++  +L GIGTVL DDP L  R +      P   ++D    + L ++ ++    A  
Sbjct: 188 WRARACTLLTGIGTVLEDDPRLNVR-DVATPRQPRIAVVDSRLDMPLTARALQGP--AEC 244

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           +I T + D     A +     +I         DL  +L  L  RG   L VE G  +  S
Sbjct: 245 LIYTSSRDASKTSALQDLGATVIPMPNAHGKVDLCAMLRDLAARGTNELHVEAGFKLNGS 304

Query: 302 FINSRLVDSIILYRSQIVIGEGGI 325
            +   LVD ++LY +  ++G GG+
Sbjct: 305 LVREGLVDELLLYLAPKLLGTGGM 328


>gi|298209105|ref|YP_003717284.1| riboflavin biosynthesis protein RibD [Croceibacter atlanticus
           HTCC2559]
 gi|83849032|gb|EAP86901.1| riboflavin biosynthesis protein RibD [Croceibacter atlanticus
           HTCC2559]
          Length = 333

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 161/336 (47%), Gaps = 41/336 (12%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67
           ++   L+ ++  +G T  NP V  +IV D  +IG G     G  HAEV A+    +++  
Sbjct: 7   YIKRCLQLAKKGLGTTYPNPMVGSVIVYDNKIIGEGWHQIAGLAHAEVNAINAVKDKSLL 66

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           + +T YV+LEPCSHYG++PPCA  II   I  VV+   DP  +V G+G++ L   G  I 
Sbjct: 67  KKSTIYVSLEPCSHYGKTPPCADLIIANNIPNVVIGTVDPFAKVKGQGIKKLLDAGCKIT 126

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG---MAGCGSVPITGFISKNQV 183
             ++E E +     + T    KR +I LK A S D  +          V IT  +S+  V
Sbjct: 127 VGVLEDECQELNKRFFTFHNSKRPYIILKWAESNDAFLAPKTKHKQQPVWITNLVSRQLV 186

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           H  RA+  AILVG  TV  D+P LT R  NG    +P R+++D   K  LD  +      
Sbjct: 187 HKWRAEEQAILVGTKTVKDDNPSLTTRDWNGP---NPTRLVIDR--KNVLDKSLSVLNDK 241

Query: 243 APVIIVTENDDPVLALAFRKKNINII------YCDCRDLKKLLTILVGRGVTSLLVEGGA 296
           A  ++ +EN            N N +      YC   +L+            S++VEGGA
Sbjct: 242 AETVVFSENTS----------NFNNLPQHICEYCHTNNLQ------------SIIVEGGA 279

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
                FIN+ L D   +++  ++  E G  +PL  G
Sbjct: 280 QTLQHFINANLWDEARVFKGDVMFYE-GTKAPLITG 314


>gi|242278131|ref|YP_002990260.1| riboflavin biosynthesis protein RibD [Desulfovibrio salexigens DSM
           2638]
 gi|242121025|gb|ACS78721.1| riboflavin biosynthesis protein RibD [Desulfovibrio salexigens DSM
           2638]
          Length = 377

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/330 (30%), Positives = 169/330 (51%), Gaps = 14/330 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
           S D RFM+ A+  +      T+ NP+V  ++V+DG ++  G   + G  HAE + + +A 
Sbjct: 6   SPDERFMARAVELAIRGRNRTAPNPTVGAVMVRDGQIVAEGYHMFCGGLHAERECIADAK 65

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
             G +    T YVTLEPC+H+G++PPC + I+E  I  +VV   DP+ + +G G+++L  
Sbjct: 66  AKGVDMSKCTMYVTLEPCNHHGKTPPCTEGILEASIPHIVVGTRDPNPKAAG-GIEYLES 124

Query: 122 KGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           KG+ VD+ ++E + K  +  +L  Q + R++  LK+A + D  I  A      ++   S 
Sbjct: 125 KGVRVDQGVLEEQCKDLISDFLCWQFKDRAYSILKLACTVDGKIAGATGAQEAVSCPESF 184

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSKIIK 238
           + V  LR+   A++VG  T+  D+P L CRL+ L E    P  +++  +   + D   + 
Sbjct: 185 HDVQHLRSMVGAVIVGGNTLREDNPSLNCRLDPLPEGFSQPKAVVVTNNLPQNHDEYTLT 244

Query: 239 TALLAPVIIVTENDDPVLALA--FRKKNINIIYCDCRD----LKKLLTILVGR-GVTSLL 291
           T   A  I  T  +      A   + K I ++     +    L+K  T+L  +  V   L
Sbjct: 245 TTRAADTIFWTSAEQAATKTASELKNKGIEVLPLPSNEKGLILEKGFTMLREKHNVLRTL 304

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            EGG  +A S     LVD  ++Y++  ++G
Sbjct: 305 CEGGGRLACSLAEQGLVDEFVMYQAPRILG 334


>gi|78212460|ref|YP_381239.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Synechococcus sp. CC9605]
 gi|78196919|gb|ABB34684.1| riboflavin biosynthesis protein RibD [Synechococcus sp. CC9605]
          Length = 349

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/319 (33%), Positives = 169/319 (52%), Gaps = 10/319 (3%)

Query: 23  GLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G TS NP V  +++  +G ++G G  A  G  HAEV AL +AG+ A+G T  VTLEPC H
Sbjct: 13  GHTSPNPLVGAVVLDCEGRLVGEGFHARAGDAHAEVGALRQAGDAAQGGTLVVTLEPCCH 72

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140
           +GR+PPC++ ++  GI RVV+ ++DPD RV G G++ L Q G+ ++  ++  E +    A
Sbjct: 73  HGRTPPCSEAVLRAGIGRVVIALEDPDPRVDGGGIRQLRQAGLEVISGVLREEARQQNRA 132

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +L R    R    LK A+S D    +    S  I+G  +++ VH LR+  DA++VG GTV
Sbjct: 133 FLHRVRTGRPFGILKWAMSLDGRTALPNGASQWISGPPARDWVHRLRSGMDAVVVGGGTV 192

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
             DDP LT R  G +   P+R++L     L   +++  TA +AP ++    +     L  
Sbjct: 193 RGDDPLLTSR--GRRSPEPLRVVLSRSLDLPDQAQLWDTA-VAPTLVAHGPEADPQRLPS 249

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
               + +  C+    ++L+  L  RG   +L E G  +A + I    V  I    +  ++
Sbjct: 250 GPDELVLSACEP---EQLMEALAQRGCNQVLWECGPELAAAVIRQGCVQEIAAVVAPKLM 306

Query: 321 GEGGIPSPLEEGYLEKNFM 339
             GG+P+    G L  + M
Sbjct: 307 --GGMPARTPLGDLHFSAM 323


>gi|325568121|ref|ZP_08144562.1| riboflavin biosynthesis protein RibD [Enterococcus casseliflavus
           ATCC 12755]
 gi|325158322|gb|EGC70473.1| riboflavin biosynthesis protein RibD [Enterococcus casseliflavus
           ATCC 12755]
          Length = 358

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/352 (32%), Positives = 167/352 (47%), Gaps = 26/352 (7%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE--AGEEARGATAYVTLEPCSHY 82
           T TNP V  +IVK+  VI +G     G PHAE  A+E+  + E+   +T YVTLEPC+H 
Sbjct: 20  TFTNPLVGAVIVKEQRVIAKGAHLVYGQPHAERNAIEQCHSSEDLINSTLYVTLEPCNHQ 79

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAY 141
           G+ PPC Q II+ GI++VV+   DP+  V+G+G ++L  +GI ++  + E+E +     Y
Sbjct: 80  GKQPPCTQLIIDSGIKKVVIGQLDPNPIVAGQGKRFLENQGIDVLVGIEETEVRRLNPHY 139

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
                 +  ++ LK A++ D  I         ITG      VH  R     ILVG  TVL
Sbjct: 140 NFYHQHQLPYVALKQAITLDGRIAHDAQTRSAITGSAVWQNVHQERGDYQGILVGSQTVL 199

Query: 202 ADDPELTCRLNGLQEHSPMRIILD--------PHFKLSLDSKIIKTALLAPVIIVTENDD 253
            DDP L   +       P+RI++D        P   L  D         APV I T+   
Sbjct: 200 TDDPTLLTTIET--SFPPIRIVVDRRGRTLSQPQLALFADDS-------APVWIFTQQ-- 248

Query: 254 PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
              A++    ++++I  +   +  LL  L  R V SL VEGGAA+  +F+ S L    I 
Sbjct: 249 --AAVSDLPAHVSVIQLEELTIAALLKELATRQVQSLYVEGGAAIHDAFLASGLWQESIT 306

Query: 314 YRSQIVIGEGGIPSPLEEGYLE--KNFMCVRRDYFGSDVCLEYIGKNLCLQE 363
           Y +   +G   + S   E   +  +    V     G DVC+       C Q+
Sbjct: 307 YVAPKFLGGNSLASFTSERTPKQLQQLTEVTVTAVGEDVCIRGRRPEECSQD 358


>gi|291006182|ref|ZP_06564155.1| riboflavin-specific deaminase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 385

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/319 (34%), Positives = 164/319 (51%), Gaps = 6/319 (1%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  A+R +      TS NP V C+++  DG   G G     G PHAEV+AL  AG  A G
Sbjct: 22  MRRAIRLTADPPRRTSPNPYVGCVVLDADGRFAGEGHHRGAGHPHAEVEALAAAGGRAAG 81

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
            TA VTLEPC+H GR+ PC + +   G+ RVV  V+DP    SG G + L+  G+ +V  
Sbjct: 82  GTAVVTLEPCAHRGRTGPCTEALSAAGVSRVVFAVEDPTRDASG-GAERLAAGGVEVVGG 140

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +   E +     +LT    +R  +T K A + D     A   S  IT   ++   H LRA
Sbjct: 141 LHREEAERHNEFWLTSVRRERPFVTWKFAGTIDGRSAAADGSSRWITAAQARRDAHALRA 200

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
             DA+LVG GT+ AD+P L  R +G+    P+R++LD   ++   ++++  +    V++ 
Sbjct: 201 VHDAVLVGGGTLRADNPHLGLR-HGVVGEPPLRVVLDSAGRIKPGARVLDGSAPTLVVVS 259

Query: 249 TENDDPVLALAFRKKNINIIYC-DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
               +P   L      + +    D  DL  L   L  RGV S+L+EGGA +A  F+   L
Sbjct: 260 DRAGEP-RGLGAAAGTLAVPSTEDGLDLAALSERLFARGVRSVLLEGGARLAAGFLAGGL 318

Query: 308 VDSIILYRSQIVIGEGGIP 326
           VD ++ Y + + +G  G+P
Sbjct: 319 VDRVVAYLAPMFLGGAGLP 337


>gi|312977170|ref|ZP_07788918.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus
           CTV-05]
 gi|310895601|gb|EFQ44667.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus
           CTV-05]
          Length = 355

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/321 (32%), Positives = 165/321 (51%), Gaps = 6/321 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGE 65
           D  +M+ AL  ++     T  NP V  +IVK+G V+  G   + G  HAE  A+ +   E
Sbjct: 7   DNFYMNLALEEAKKGRYQTWKNPMVGAVIVKNGQVLATGYHHHYGQNHAERDAISKLTPE 66

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +   +T YVTLEPC+HYG+ PPC+  II+ GI+RVVV   DP   V+G+G+  L + G+ 
Sbjct: 67  QLFNSTLYVTLEPCNHYGKQPPCSDLIIKSGIKRVVVGQIDPHKLVTGKGIAKLQENGVQ 126

Query: 126 VDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   + ++    L+ + +   +     IT+K A S DN + M G    PIT      QVH
Sbjct: 127 VTTGVLADDASKLNKFYSYFYQYGFPWITVKEATSLDNKVAMRGQ-RTPITNQAVYQQVH 185

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             RA   AI++G  T + DDP L  R N   ++ P+RII+D   +L    ++   +   P
Sbjct: 186 SERADYQAIMIGSSTAIIDDPIL--RTNVKSDYPPIRIIIDRRGRLLNHLRLRLLSDTNP 243

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
             I T N   +    F    I II+     ++++   L  + + S+ VEGG  +  + +N
Sbjct: 244 TWIFTPNKQ-MSKNNFTNSKIKIIHLATNKIQEVFDYLSTKEIQSVYVEGGPTLEKAIMN 302

Query: 305 SRLVDSIILYRSQIVIGEGGI 325
              V+ +I Y + I +G+ G+
Sbjct: 303 EIFVNEVIKYTAPIFLGDEGV 323


>gi|298250252|ref|ZP_06974056.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM
           44963]
 gi|297548256|gb|EFH82123.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM
           44963]
          Length = 372

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/328 (34%), Positives = 160/328 (48%), Gaps = 29/328 (8%)

Query: 49  YGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           YG  PHAEV AL +AGE ARGA  YVTLEPC     +PPC + I+  GIR V+V   DP+
Sbjct: 47  YG--PHAEVHALNDAGELARGADLYVTLEPCCVTIHTPPCTRAILAAGIRHVIVSSLDPN 104

Query: 109 VRVSGRGLQWLSQKGIIVD---RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG 165
             VSG+GL  L + G+ V       E++  I   A   RQ  +R ++T K A++ D  I 
Sbjct: 105 PLVSGQGLTQLREAGVEVTVGVGAEETDEIIRPFATFIRQ--QRPYVTAKWAMTLDGKIA 162

Query: 166 MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-------EHS 218
                +  I+G  ++  VH LR + DAILVG GTV ADDP LT RL   +          
Sbjct: 163 THSSDAYWISGSEARRWVHNLRDRVDAILVGSGTVRADDPMLTVRLTDEERLYARAPRQG 222

Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA-FRKKNINIIYCDCR---- 273
           P+R++L     L   SK+++  L +   I+   D PV      R   + +I         
Sbjct: 223 PLRVVLASQGALPAQSKLLQPDLASDTCIIVGEDCPVEQQQRLRDTGVEVIQVASNNTSQ 282

Query: 274 -DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
            DL   L+ L  +GV  +L+EGG +   S  + + +D +  + +  ++G     SPL  G
Sbjct: 283 LDLTSALSALAQKGVMHVLIEGGNSTLGSAFDQQRIDHVAAFIAPKLVGGEAALSPL--G 340

Query: 333 YLEKNFM-------CVRRDYFGSDVCLE 353
                FM        VR    G DV +E
Sbjct: 341 GKGLAFMREALQLQQVRIQIIGEDVLIE 368


>gi|134099429|ref|YP_001105090.1| riboflavin-specific deaminase [Saccharopolyspora erythraea NRRL
           2338]
 gi|133912052|emb|CAM02165.1| riboflavin-specific deaminase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 364

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/319 (34%), Positives = 164/319 (51%), Gaps = 6/319 (1%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  A+R +      TS NP V C+++  DG   G G     G PHAEV+AL  AG  A G
Sbjct: 1   MRRAIRLTADPPRRTSPNPYVGCVVLDADGRFAGEGHHRGAGHPHAEVEALAAAGGRAAG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
            TA VTLEPC+H GR+ PC + +   G+ RVV  V+DP    SG G + L+  G+ +V  
Sbjct: 61  GTAVVTLEPCAHRGRTGPCTEALSAAGVSRVVFAVEDPTRDASG-GAERLAAGGVEVVGG 119

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +   E +     +LT    +R  +T K A + D     A   S  IT   ++   H LRA
Sbjct: 120 LHREEAERHNEFWLTSVRRERPFVTWKFAGTIDGRSAAADGSSRWITAAQARRDAHALRA 179

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
             DA+LVG GT+ AD+P L  R +G+    P+R++LD   ++   ++++  +    V++ 
Sbjct: 180 VHDAVLVGGGTLRADNPHLGLR-HGVVGEPPLRVVLDSAGRIKPGARVLDGSAPTLVVVS 238

Query: 249 TENDDPVLALAFRKKNINIIYC-DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
               +P   L      + +    D  DL  L   L  RGV S+L+EGGA +A  F+   L
Sbjct: 239 DRAGEP-RGLGAAAGTLAVPSTEDGLDLAALSERLFARGVRSVLLEGGARLAAGFLAGGL 297

Query: 308 VDSIILYRSQIVIGEGGIP 326
           VD ++ Y + + +G  G+P
Sbjct: 298 VDRVVAYLAPMFLGGAGLP 316


>gi|120434994|ref|YP_860680.1| bifunctional riboflavin biosynthesis protein RibD [Gramella
           forsetii KT0803]
 gi|117577144|emb|CAL65613.1| bifunctional riboflavin biosynthesis protein RibD [Gramella
           forsetii KT0803]
          Length = 347

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/312 (31%), Positives = 157/312 (50%), Gaps = 22/312 (7%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA- 67
           +++   +  ++  +G T  NP V  +IV    +IG G     G PHAEV A+    +++ 
Sbjct: 6   KYIKRCIELAQNGLGTTYPNPMVGSVIVYKNKIIGEGWHKKAGEPHAEVNAINSVKDQSL 65

Query: 68  -RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            + A  YV+LEPCSH+G++PPC+  II  GI++V++   DP  +V+GRG++ L   G  V
Sbjct: 66  LKHAIIYVSLEPCSHFGKTPPCSDLIIAKGIKKVIIGTMDPFAKVAGRGIKKLMDAGCEV 125

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS---VPITGFISKNQ 182
           +  ++E E       + T Q ++R +I LK A +QD  I          V IT   S   
Sbjct: 126 NVGILEEECLELNKRFFTFQKKQRPYIILKWAQTQDGFIAPEKKDKKRPVWITNKYSGQL 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII----K 238
           VH  R++  AILVG  TV+ D+P L  R       +P+RII+D + K+S D  ++    K
Sbjct: 186 VHKWRSEETAILVGTNTVIEDNPSLNVR--KWTGSNPVRIIIDQNLKISKDHSVLDEKQK 243

Query: 239 TALLAPVIIVTENDDPVLALAFR-KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
           T +L         D  ++       +NI+   CD         +L    + S+++EGG+ 
Sbjct: 244 TVVLCKKKTTGSEDGNIIFEEIEFSENISQEICD---------VLHKYDLQSVIIEGGSN 294

Query: 298 VAHSFINSRLVD 309
               FI + L D
Sbjct: 295 TLQQFIKAGLWD 306


>gi|89901442|ref|YP_523913.1| riboflavin biosynthesis protein RibD [Rhodoferax ferrireducens
           T118]
 gi|89346179|gb|ABD70382.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Rhodoferax ferrireducens T118]
          Length = 377

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/314 (32%), Positives = 157/314 (50%), Gaps = 22/314 (7%)

Query: 28  NPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYG 83
           NP V C++       +G+G T   G  HAE+ AL +A   G    GATAYVTLEPCSH+G
Sbjct: 26  NPRVGCVMTDCRENTLGQGHTQRTGGAHAEIVALRDAKARGNSVVGATAYVTLEPCSHHG 85

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA--- 140
           R+ PC   +I  GI++VV  + DP+  VSG+G + L   G+ V+ +M ++  + + +   
Sbjct: 86  RTGPCCDALIAAGIKKVVASIADPNPLVSGQGFERLRAAGVEVE-VMPADDPLAIASREL 144

Query: 141 ---YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
              + +R + K   + LK+A S D    +    S  IT   ++   H  RA++ A+L GI
Sbjct: 145 NIGFFSRMIRKTPWVRLKMAASLDGKSALENGVSQWITSEAARTDGHAWRARACAVLTGI 204

Query: 198 GTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
           GTVL D+P L  RL       P  +I+D   +  LD+ +     +  +    +N+    A
Sbjct: 205 GTVLTDNPRLDVRLVDTPRQ-PHLVIVDSRLETPLDAALFTPGRVIYLYAAVQNEAKKAA 263

Query: 258 LAFRKKNINIIYC--------DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
           L  R     +IY         +  DL  +L  L  R +  L VE G  +  SFI   LVD
Sbjct: 264 LETR--GATVIYAPGLEPATRNKVDLAAMLRDLAAREINELHVEAGHKLNGSFIREGLVD 321

Query: 310 SIILYRSQIVIGEG 323
             ++Y + ++IG G
Sbjct: 322 EYLVYLAPMLIGLG 335


>gi|300727427|ref|ZP_07060836.1| riboflavin biosynthesis protein RibD [Prevotella bryantii B14]
 gi|299775307|gb|EFI71906.1| riboflavin biosynthesis protein RibD [Prevotella bryantii B14]
          Length = 320

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 115/337 (34%), Positives = 159/337 (47%), Gaps = 49/337 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59
           M   S D ++M   +  +R  +     NPSV  +IV  D  +IG G T+  G PHAEV A
Sbjct: 1   MNQKSIDEKYMRRCIAIARNGLNSAKPNPSVGAVIVSADNRIIGEGYTSSYGGPHAEVNA 60

Query: 60  LEEAGEEAR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
                 E       AT YV+LEPCSHYG++PPCA  ++  G++R V    DP   V GRG
Sbjct: 61  FASVKPEDEHLLADATLYVSLEPCSHYGKTPPCADLVVRKGVKRCVCGCIDPFSEVQGRG 120

Query: 116 LQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           ++ L   GI V   ++E E K     + T  +  R +I LK A + +  +G  G   + I
Sbjct: 121 IKKLRDAGIDVTVGVLEKECKASNKRFFTFNMLHRPYIILKWAQTINGFMG--GKDRLHI 178

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           +   ++  VH LRA+ DAIL+G GT+ +D P+L  R       SP RI+L          
Sbjct: 179 STPFTQMLVHQLRAECDAILIGRGTLESDHPQLNVR--DWYGPSPERIVL---------- 226

Query: 235 KIIKTALLAPVIIVTENDD--PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
                         + N D  P   LAF             D+  +LT L      SL+V
Sbjct: 227 --------------SHNTDGIPEGFLAF------------TDIDSVLTHLYQEKKQSLIV 260

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
           EGGA +  +FI + L D I +  S   I E GI SP+
Sbjct: 261 EGGAQILQAFIEAGLWDEIRIETSPFTITE-GIKSPI 296


>gi|326800779|ref|YP_004318598.1| riboflavin biosynthesis protein RibD [Sphingobacterium sp. 21]
 gi|326551543|gb|ADZ79928.1| riboflavin biosynthesis protein RibD [Sphingobacterium sp. 21]
          Length = 348

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/322 (31%), Positives = 154/322 (47%), Gaps = 15/322 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE------- 62
           +M   L  +    G  S NP V  L+V    +IG G     G  HAE  A+ +       
Sbjct: 7   YMRRCLELAELGQGSVSPNPIVGALVVHHDTIIGEGWHRKYGEAHAEPNAIADVFNRYPN 66

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A +  R +T YVTLEPCSH+G++PPCA  +I+  +++VVV  +DP  +V+GRG+  L + 
Sbjct: 67  AADLLRESTVYVTLEPCSHHGKTPPCADLLIKHQVKQVVVACNDPFEQVNGRGIAKLREA 126

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +++ ++E E K     + TR   +R ++ LK A + +      G     ITG  ++ 
Sbjct: 127 GIDVLEGVLEEEAKFVNRRFFTRVQHQRPYVILKWAETANGYFAPKGEKQQWITGSAAQV 186

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
             H  R++ DA+LVG  T L D+P+LT R       +P RI++D    L     +     
Sbjct: 187 VNHRWRSEEDAVLVGANTALIDNPQLTVR--HWFGRNPKRIVIDKELSLPPHLHLFDKEA 244

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
              V    +ND        R K I +   D    + +L  L    V SL+VEGG    + 
Sbjct: 245 ETIVFNAKKND-----WQDRLKLIALENFDWYLPQNILYQLHLMDVQSLIVEGGIKTLNL 299

Query: 302 FINSRLVDSIILYRSQIVIGEG 323
           FI + L D   + R Q    +G
Sbjct: 300 FIKAGLWDEARVLRGQAYWKDG 321


>gi|15827206|ref|NP_301469.1| bifunctional riboflavin-specific deaminase/reductase [Mycobacterium
           leprae TN]
 gi|221229684|ref|YP_002503100.1| putative bifunctional riboflavin-specific deaminase/reductase
           [Mycobacterium leprae Br4923]
 gi|13092754|emb|CAC30063.1| putative bifunctional riboflavin-specific deaminase/reductase
           [Mycobacterium leprae]
 gi|219932791|emb|CAR70648.1| putative bifunctional riboflavin-specific deaminase/reductase
           [Mycobacterium leprae Br4923]
          Length = 339

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 107/327 (32%), Positives = 163/327 (49%), Gaps = 40/327 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
           V S DA  M  A+  S    G T  NP V  +IV  DG V+G G T   G  HAEV AL 
Sbjct: 6   VDSLDA-AMRLAVEQSYLVKGATYPNPPVGAVIVDPDGRVVGVGATEPAGGDHAEVVALR 64

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS- 120
            AG  A GA A VTLEPC+HYG++PPC   ++E  + +V   + DP+    G   +  + 
Sbjct: 65  SAGVTAAGAIAVVTLEPCNHYGKTPPCVNALLEAKVDKVAYAIADPNASAGGGAARLTAA 124

Query: 121 ----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
               Q G++ D +     + +LH    +Q     H+T K A S D     A   S  ++ 
Sbjct: 125 GVHVQSGVLADLVTAGPLREWLH----KQRTGLPHVTWKYASSIDGRSAAADGSSRWLSS 180

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL-NG-LQEHSPMRIILDPHFKLSLDS 234
             S+  +H  RA +DAI+VG GTVLAD+P LT RL NG L +  P+R+++    ++ L++
Sbjct: 181 EASRADLHRRRATADAIVVGTGTVLADNPTLTARLANGALADRQPLRVVVG-MREIPLEA 239

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
            ++             +D P + +               D  ++L  L  R  T +L+EG
Sbjct: 240 NVLN------------DDSPTMVI------------RTHDPMEVLKALADR--TDVLLEG 273

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321
           G  +A +F+ +  ++ I+ Y + I++G
Sbjct: 274 GPTLAGAFLRAGTINRILAYVAPILLG 300


>gi|303245768|ref|ZP_07332051.1| riboflavin biosynthesis protein RibD [Desulfovibrio fructosovorans
           JJ]
 gi|302493031|gb|EFL52896.1| riboflavin biosynthesis protein RibD [Desulfovibrio fructosovorans
           JJ]
          Length = 380

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 108/340 (31%), Positives = 177/340 (52%), Gaps = 24/340 (7%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++  DA FM+ AL  +    G    NP V  ++V+DG ++  G     G PHAEV+ L +
Sbjct: 1   MAPVDADFMARALELAERGRGFVMPNPRVGAVLVRDGGIVAEGWHKVFGGPHAEVECLHD 60

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G    G T YVTLEPC+H+G++PPC++ +++ GI RVVV   DP+  V+G G   L
Sbjct: 61  AERKGVSPAGGTMYVTLEPCNHFGKTPPCSRTLLDAGIARVVVGCLDPNP-VAGGGAALL 119

Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            Q+G+ V   ++ES+ +  +  ++T Q   R ++T+K+A++ D  I      +  ++   
Sbjct: 120 RQEGVEVTVGVLESQCREAVADFITWQTMGRPYVTVKLAMTLDGRIATRTGDAAWVSCEA 179

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPM-------RIILDPHFK 229
           S+ +VH +RA S A+LVG GT+ AD+P L+ RL  N    H+P        R + D   +
Sbjct: 180 SRERVHAMRAASSAVLVGGGTLRADNPRLSHRLPENHPLAHNPQPLGVVVTRRLPDADAQ 239

Query: 230 LSLDSK------IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV 283
           L+L         I+  A  A   + T+ +   + +    +  N    +  DL   L  L 
Sbjct: 240 LALLKDRPTRLVILTDAKAAASPVATQLEKAGVRVWGLPRAAN---GEGLDLAAGLARLR 296

Query: 284 GRG-VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
               V +LL EGG  +A S +   L D ++++ +  V+G+
Sbjct: 297 QEARVFALLCEGGGELAASLLGQGLADELVIFYAPKVLGD 336


>gi|333029739|ref|ZP_08457800.1| riboflavin biosynthesis protein RibD [Bacteroides coprosuis DSM
           18011]
 gi|332740336|gb|EGJ70818.1| riboflavin biosynthesis protein RibD [Bacteroides coprosuis DSM
           18011]
          Length = 348

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 103/320 (32%), Positives = 163/320 (50%), Gaps = 12/320 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA- 67
           ++M   ++ + +     + NP V  +IV  GI+IG G     G  HAEV A+    +++ 
Sbjct: 5   KYMKRCIQLASYGKLHAAPNPLVGAVIVHKGIIIGEGFHIQSGKAHAEVNAINSVKDQSL 64

Query: 68  -RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
              +T +V+LEPCSH G++PPC   II   I  VV+   DP  +V+GRG+  L ++GI V
Sbjct: 65  LPESTIFVSLEPCSHTGKTPPCVDLIINKKIPHVVIGCQDPFSKVAGRGIAKLKEQGIKV 124

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM--AGCGSVPITGFISKNQV 183
           +  ++E+E K  +H +   Q EKR +I LK A S D  I    +      ++  +S    
Sbjct: 125 EIGILENECKELIHRFYIFQEEKRPYILLKWAESADGYIDQIRSSGTPTLLSSPLSSILT 184

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  RA+ ++ILVG  T L D+P LT R     +  P+R+I+D +  L     I   +   
Sbjct: 185 HKRRAEVESILVGRRTALLDNPSLTTR--HWYQKDPIRLIIDRYLSLPNTLHIFDGS--T 240

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P  I TE D       F+ +    +  +   L ++L  +  + + S+LVEGGA +  SFI
Sbjct: 241 PTFIFTEVDK---KSNFKNRTYIQLDFNADILTQILNWMYFQNIQSVLVEGGAQLHQSFI 297

Query: 304 NSRLVDSIILYRSQIVIGEG 323
           ++ L D   +  S   I +G
Sbjct: 298 DADLWDETHIEESPQSILKG 317


>gi|332530146|ref|ZP_08406095.1| riboflavin biosynthesis protein RibD [Hylemonella gracilis ATCC
           19624]
 gi|332040416|gb|EGI76793.1| riboflavin biosynthesis protein RibD [Hylemonella gracilis ATCC
           19624]
          Length = 377

 Score =  146 bits (368), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 107/335 (31%), Positives = 163/335 (48%), Gaps = 28/335 (8%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
           M  AL  +   + LTS NP V C+IV  +G ++G G T   G PHAEV AL +A   G +
Sbjct: 7   MQRALALAEQGLYLTSPNPRVGCVIVGVEGQLLGEGHTQRAGGPHAEVMALRDAQARGHD 66

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            RGATAYVTLEPC+H GR+ PC + +   GI +VV  ++DP+ +V+G+G   L   G++V
Sbjct: 67  VRGATAYVTLEPCAHQGRTGPCCEALAAAGIGKVVASLEDPNPKVAGQGFARLRAAGVVV 126

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +     ++ +     + +R       + +KIA S D    +    S  IT   ++   H 
Sbjct: 127 EVGPGAAQSRELNLGFFSRMQRGLPWVRMKIAASLDGQTALQNGLSQWITSPEARADGHA 186

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL------------NGLQEHSPMRIILDPHFKLSLD 233
            RA++ AIL G+GTV  D+P L  RL            +   E  P   + +PH     D
Sbjct: 187 WRARACAILTGMGTVREDNPRLDVRLVETPRQPRLVVVDSRLETPPTAALFEPHR----D 242

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTIL-VGRGVT 288
           +   + A   PV+I     D     A + +   +++        DL  LL  L   R + 
Sbjct: 243 TAPGREA--QPVLIYGAVTDAARQSALQARGATVVHLPNAQGKVDLAALLRDLATQREIN 300

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            L VE G  +  S +   LVD +++Y +  ++G G
Sbjct: 301 ELHVEAGHQLNGSLLREGLVDELLIYLAPKLLGAG 335


>gi|325522583|gb|EGD01124.1| pyrimidine deaminase [Burkholderia sp. TJI49]
          Length = 221

 Score =  146 bits (368), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 88/211 (41%), Positives = 119/211 (56%), Gaps = 4/211 (1%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M  AL  +   +  T+ NP V C+IVK G VIG G T   G  HAEVQAL++A
Sbjct: 3   SDIDFAHMQRALALAARGMYTTTPNPRVGCVIVKGGDVIGEGYTQPAGHDHAEVQALKDA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G +  G+T YVTLEPCSH+GR+PPCA  +IE  + +VV  ++DP+ +VSGRGL  L 
Sbjct: 63  RARGHDVAGSTVYVTLEPCSHFGRTPPCANALIEARVAKVVAAMEDPNPQVSGRGLGMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   ++  E       +++R    R  + +K A + D    +    S  ITG  +
Sbjct: 123 DAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKSAATLDGRTALPSGESQWITGDAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
           +   H  RA++ AIL GIGTV  D+P LT R
Sbjct: 183 RLDGHAWRARACAILTGIGTVREDNPLLTVR 213


>gi|257869314|ref|ZP_05648967.1| riboflavin-specific deaminase [Enterococcus gallinarum EG2]
 gi|257803478|gb|EEV32300.1| riboflavin-specific deaminase [Enterococcus gallinarum EG2]
          Length = 359

 Score =  146 bits (368), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 174/364 (47%), Gaps = 35/364 (9%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-- 62
           ++  R +S AL+      G T TNP V  +IVKD  ++  G     G PHAE  A++   
Sbjct: 4   TYMKRAISEALKGK----GQTFTNPLVGAVIVKDEEIVAVGSHMAYGQPHAEKNAIDSCS 59

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           + E+   +T YVTLEPC HYG+ PPC   I++ GI++VV+   DP+  VSG+G  +L  +
Sbjct: 60  SPEKLIDSTIYVTLEPCHHYGKQPPCTTAILQSGIKKVVIGQLDPNPLVSGKGKAFLESQ 119

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ ++  ++E E +     Y T   E+R  + LK A + D  I +AG     ITG  +  
Sbjct: 120 GVAVITGVLEKEVREINRHYNTYHEEQRPFVALKQATTLDGKIALAGQ-RARITGEAALR 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +V   R+   AIL+G  T L D+P L                  P +++ LD K     L
Sbjct: 179 RVRQERSDYQAILIGSRTALIDNPTLRTE------------AAFPTYRVVLDRK--GETL 224

Query: 242 LAPVIIVTENDDPVLALAFRK------KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
              + +  +   PVL    +K       ++NII      L  ++  L  R + S+ VEGG
Sbjct: 225 KQQLTLFEDTSSPVLVFTTKKVQSVFSNHVNIITTPSLTLSFVMKELYRRKIQSVYVEGG 284

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           +++  +F+     D +I Y S  +IG  G  S      + + F         ++V +E +
Sbjct: 285 SSIHDAFLADGYWDQVITYLSPKLIGGNGTASFASSREVNQMFAL-------TEVTVEPV 337

Query: 356 GKNL 359
           G+ L
Sbjct: 338 GEEL 341


>gi|163755421|ref|ZP_02162541.1| riboflavin biosynthesis protein RibD [Kordia algicida OT-1]
 gi|161324841|gb|EDP96170.1| riboflavin biosynthesis protein RibD [Kordia algicida OT-1]
          Length = 340

 Score =  146 bits (368), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 160/313 (51%), Gaps = 34/313 (10%)

Query: 28  NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--RGATAYVTLEPCSHYGRS 85
           NPSV  +IV + ++IG G T+  G  HAEV A+    +++  + AT YV+LEPCSH+G++
Sbjct: 18  NPSVGAIIVHNDMIIGEGYTSAYGGNHAEVNAVHSVKDKSLLKEATMYVSLEPCSHFGKT 77

Query: 86  PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG------IIVDRMMESEGKIFLH 139
           PPC+  II+  I +VV+   DP  +V+G+G++ L   G      ++ D  + S  + F  
Sbjct: 78  PPCSDLIIKHQIPKVVIGTIDPFAKVAGKGIEKLQNAGCEVILNVLKDECIASNKRFF-- 135

Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP-----ITGFISKNQVHLLRAQSDAIL 194
              T    KR ++ LK A +QD  I      + P     IT   S+  VH  R++  AIL
Sbjct: 136 ---TFHQHKRPYVILKWAETQDGFIDKIRQENDPVQPNWITNKFSRQLVHKWRSEETAIL 192

Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL----SLDSKIIKTALLAPVIIVTE 250
           VG  T + D+P+L  R       +P+RI+LD   ++    SL  + IKT +L  V   + 
Sbjct: 193 VGTNTAITDNPKLNTR--DWHGKNPVRIVLDRSLRIPENYSLFDQTIKTIVLTEVEKAST 250

Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
            +     + F  +N+    C+         +L    + S+++EGG     +F+++ L D 
Sbjct: 251 ENLIFETIDF-SENLAQQICN---------VLFQHELQSVIIEGGKQTLQTFMDANLWDE 300

Query: 311 IILYRSQIVIGEG 323
             +++  I+  +G
Sbjct: 301 ARVFKGNILFQQG 313


>gi|330718204|ref|ZP_08312804.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Leuconostoc fallax KCTC 3537]
          Length = 346

 Score =  145 bits (367), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 100/307 (32%), Positives = 155/307 (50%), Gaps = 14/307 (4%)

Query: 24  LTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR--GATAYVTLEPCSH 81
           LT  NP V  +IVKD +V+  G     G  HAE+    +  + A+   AT YVTLEPCS 
Sbjct: 21  LTFENPRVGAVIVKDNVVLATGYHHQFGQEHAEMNTFHQLKDPAQVIDATMYVTLEPCST 80

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
           +G+   CAQ + + G+RRVV+   DP+   +G G+  L Q GI VD ++ +E    L+  
Sbjct: 81  HGKVGSCAQSMAKWGLRRVVIGSIDPNPSTNGHGVAILKQAGIQVD-VLNTEHSRRLNPE 139

Query: 142 LTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
                E R  ++ LK+A S++ ++       + +T   +   VH  RA   AIL+G  T 
Sbjct: 140 FHYYFEHRLPYVQLKLATSKNGIVSDNAKTRIKLTNHKADIDVHQERASKSAILIGSQTF 199

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
           L D P LT R   L    P+RI+LD   +L    + IK       +I TEN       A+
Sbjct: 200 LTDWPSLTVRYLALHHPQPLRIVLDRRGRL----QNIKFDFSNRWLIYTENHAFAEKHAY 255

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
            K++ N +     DL +       + + S++VEGG ++  SFI   L +  ++YR+  ++
Sbjct: 256 VKESHNGLIGVLNDLAQ------QQQIQSIMVEGGPSLIQSFIAQDLWNEYLIYRTDKLL 309

Query: 321 GEGGIPS 327
            + G+ S
Sbjct: 310 LDSGLAS 316


>gi|302541057|ref|ZP_07293399.1| riboflavin biosynthesis protein RibD [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302458675|gb|EFL21768.1| riboflavin biosynthesis protein RibD [Streptomyces himastatinicus
           ATCC 53653]
          Length = 362

 Score =  145 bits (367), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 113/340 (33%), Positives = 169/340 (49%), Gaps = 12/340 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  A+  +   +G TS NP V C+I+  +G   G G     G PHAEV AL  AGE ARG
Sbjct: 1   MRRAVALAARGLGHTSPNPVVGCVILDAEGQPAGEGWHQRAGGPHAEVHALRAAGERARG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            TA VTLEPC+H GR+ PCA+ +++ GI RV   V DP  +  G      +    +    
Sbjct: 61  GTALVTLEPCNHTGRTGPCARALLDAGIARVRYAVADPTGQARGGAATLAAAGVDVAAGP 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +  E +    A+LT     R  +  K A + D     A   S  IT   ++  VH LRA+
Sbjct: 121 LTDEAEAVNEAWLTAMRRGRPFVLWKYAATLDGRSAAADGTSRWITSAAARADVHRLRAE 180

Query: 190 SDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPH-FKLSLDSKIIKTALLAPVII 247
           +DA++VG GT+ ADDP L  R  +G+ +  P+R+ +D     L  D++I+  A  AP ++
Sbjct: 181 ADAVVVGSGTLRADDPHLAVRDRDGVTQ--PLRVAVDTDATALKPDARILDDA--APTLV 236

Query: 248 VTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
               D     L        +         D+  LL  L  RGV S+L+EGG  +A +F+ 
Sbjct: 237 AVAEDADTGHLPAGTDTARLPRARAGRGLDIAALLAALHDRGVRSVLLEGGPTLAGAFLA 296

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           +  VD ++ Y + +++G G  P+ L +  +      +R D
Sbjct: 297 AGAVDKVVGYLAPVLLGAG--PAALADAGITTIAQALRMD 334


>gi|256545035|ref|ZP_05472403.1| riboflavin biosynthesis protein RibD [Anaerococcus vaginalis ATCC
           51170]
 gi|256399331|gb|EEU12940.1| riboflavin biosynthesis protein RibD [Anaerococcus vaginalis ATCC
           51170]
          Length = 359

 Score =  145 bits (367), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 105/325 (32%), Positives = 155/325 (47%), Gaps = 25/325 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M      ++   G T TNP V  ++VKD  +I  G     G  HAEV        +
Sbjct: 3   DKEYMRKCFELAKKARGKTLTNPLVGAVLVKDNKIISTGFHHEYGKTHAEVDCFNNLKSD 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GA  YV LEPCSH+G+  PC   II+  I++V++   D + +V   GL+ L    I +
Sbjct: 63  CDGAILYVNLEPCSHWGKQGPCTLEIIKRNIKKVIISNIDTNPKVD--GLKVLKDNNIEV 120

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++E EGK     +       R  I LK A + D  I      S  I+   S+  VH 
Sbjct: 121 VTGLLEDEGKKLNEKFFFNVKYNRPLIALKFAQTLDGKISSNINDSKWISNESSRAYVHE 180

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLD---SKIIKTAL 241
           LR+  DAI+VG  T++ D+P L  R+ NG+    P+RII+D + ++  D    KI     
Sbjct: 181 LRSDYDAIIVGKNTLIKDNPSLNSRIENGVD---PVRIIVDTNLEIEKDYMSYKIFNLKS 237

Query: 242 LAPVIIVT--ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295
                I T  + ++P         N+NII C  +    DL  L   L    + S+LVEGG
Sbjct: 238 DKKTYIATCKDTNNP---------NLNIIKCKMKNNHVDLNDLANKLYKMKIGSILVEGG 288

Query: 296 AAVAHSFINSRLVDSIILYRSQIVI 320
           +++ + F+   LVD I  + S  +I
Sbjct: 289 SSLNYGFLQEGLVDKIYEFISPKII 313


>gi|227549213|ref|ZP_03979262.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078667|gb|EEI16630.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 324

 Score =  145 bits (367), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 147/304 (48%), Gaps = 36/304 (11%)

Query: 23  GLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G TS NP V C L   +G +I  G T+  G  HAE+ AL  AG  ARGATA VTLEPC+H
Sbjct: 18  GATSPNPPVGCALFSPEGELIATGGTSPAGGAHAEINALRAAGSRARGATAVVTLEPCNH 77

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
            GR+ PCA+ + +  I R+V    DP+ + +G G  +L++ G+ V  + E      L  +
Sbjct: 78  TGRTGPCAKALADAQIARLVYLTTDPNPQAAG-GADYLARHGVEV--VFEPRRVDALVPW 134

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
           LT     R  +TLK A S D         S  ITG  ++  VH  RA  DAI++G GT +
Sbjct: 135 LTSIERGRPSVTLKYAASLDGFTAAPDGTSKWITGPAARRHVHADRAVRDAIIIGTGTAI 194

Query: 202 ADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
           AD+P LT R +   L    P R+++                       V E +  +  L 
Sbjct: 195 ADNPSLTARYDDGSLMATQPRRVVVG-------------------TRAVPEGN--LTRLG 233

Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
           F +      Y    D    L  L   G   +LVEGGA +A SF+   LVD +  Y + ++
Sbjct: 234 FEQ------YATPDD---ALEALWESGARDVLVEGGAGLAASFLEQGLVDRVQAYAAPLL 284

Query: 320 IGEG 323
           +G G
Sbjct: 285 LGAG 288


>gi|229495189|ref|ZP_04388924.1| riboflavin biosynthesis protein RibD [Porphyromonas endodontalis
           ATCC 35406]
 gi|229317632|gb|EEN83530.1| riboflavin biosynthesis protein RibD [Porphyromonas endodontalis
           ATCC 35406]
          Length = 342

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/344 (33%), Positives = 171/344 (49%), Gaps = 24/344 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ D  +M   L  +    G TS NP V  ++V    ++G G     G PHAEV     
Sbjct: 1   MTANDTLYMQRCLDLAALATGYTSPNPLVGAILVHQDRIVGEGYHHRAGEPHAEVNCFAS 60

Query: 63  AGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
              E       +T YV+LEPCSHYG++PPCA+ +++  + RVVV + DP   V+GRG+  
Sbjct: 61  VRPEDEKWIAQSTLYVSLEPCSHYGKTPPCAELVLQKRVPRVVVAMQDPFPEVAGRGIAL 120

Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGM----AGCGSVP 173
           L  KG+ V+  +  E   +L+ +    VEK R  +TLK A S+D  I      A      
Sbjct: 121 LRSKGVEVEVGVLEEEARWLNRFFLTAVEKNRPWVTLKWAQSRDGFIDRVREDASQRPEV 180

Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233
            +  I +  VH LR   DAILVG  T+  D+P LT R       SP  ++LD    L   
Sbjct: 181 FSSPIRQRYVHYLRHCHDAILVGRRTIQLDNPSLTNRF--WWGTSPQPVVLDSEGVLCHQ 238

Query: 234 S-KIIKTALLAPVIIVTENDDPVLALAFRKKNI--NIIYCDCRD--LKKLLTILVGRGVT 288
           + K+ + +   P  IV+ +       AFR + +  N I  +  +  +  LL  L  R + 
Sbjct: 239 AYKVNQNSTSKPWFIVSPS-------AFRSQPLPENCIAIERSEHFIASLLETLASRKIQ 291

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
           SLLVEGGA    +F++S L D++    S  ++ E G+ +P+  G
Sbjct: 292 SLLVEGGAQTLQAFLDSGLYDAVDREVSPRLLYE-GVAAPIFSG 334


>gi|297182203|gb|ADI18374.1| pyrimidine deaminase [uncultured actinobacterium HF4000_04C13]
          Length = 338

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 126/342 (36%), Positives = 164/342 (47%), Gaps = 40/342 (11%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGR 84
           TS NP V  ++V DG ++G G T   G  HAE  AL EAG  A GAT Y TLEPC H GR
Sbjct: 27  TSPNPRVGAVVVVDGRMVGSGATQPPGGAHAERVALAEAGPAAAGATLYTTLEPCDHEGR 86

Query: 85  SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLT 143
           + PC   II  G+ RVVV + DPD  VSGRG+  L + G+ VD  ++E E    L  YL 
Sbjct: 87  TAPCTDAIIGAGVARVVVGIGDPDPEVSGRGIGRLREAGLDVDVGVLEDEVSDTLAPYLH 146

Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203
            +   R ++ LK+A + D  I      S  ITG  ++  VH LRA  DAI VG GT+ AD
Sbjct: 147 HRRTGRPYVVLKLAATLDGRIAAPDGTSRWITGSEARLDVHRLRASCDAICVGAGTIRAD 206

Query: 204 DPELTCR-LNGLQE--HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
           DP L  R  +G  E    P R++L          +I   A + P            A  +
Sbjct: 207 DPRLDVRDADGEVEGGDPPRRVVL---------GEIPAGARVLP------------ADEY 245

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
                 ++     D           GV  LLVEGGA VA  F  + LVD  ++Y +  ++
Sbjct: 246 HGGLEGLLDGLGAD-----------GVLKLLVEGGADVAGRFHRAGLVDRYVVYLAPALL 294

Query: 321 GEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362
           G G    PL  G        +RR  F   V +E +G +L L 
Sbjct: 295 G-GEDGRPLMAGPGAPTMADLRRGRF---VAVEVLGDDLRLD 332


>gi|239978360|ref|ZP_04700884.1| putative riboflavin/cytosine deaminase [Streptomyces albus J1074]
 gi|291450256|ref|ZP_06589646.1| riboflavin biosynthesis protein RibD [Streptomyces albus J1074]
 gi|291353205|gb|EFE80107.1| riboflavin biosynthesis protein RibD [Streptomyces albus J1074]
          Length = 378

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 114/325 (35%), Positives = 165/325 (50%), Gaps = 16/325 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  AL  +   +G TS NP V C+++   G   G G     G PHAE+ AL EAG+ ARG
Sbjct: 14  MRRALELAARGLGTTSPNPVVGCVVLDAHGEQAGEGWHRRAGGPHAEIHALREAGDRARG 73

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128
            TA VTLEPC+H GR+ PCAQ +++ GI RVV  V DPD    G G   L   G    + 
Sbjct: 74  GTALVTLEPCNHTGRTGPCAQALLDAGISRVVYAVADPDPLAEG-GAATLRAAGAETSQG 132

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++ +E +    A+LT     R H+T K A + D     A   S  IT   ++  VH LRA
Sbjct: 133 LLAAEAEQVNAAWLTSVRRGRPHVTWKYAATLDGRTAAADSTSRWITSAEARADVHRLRA 192

Query: 189 QSDAILVGIGTVLADDPEL-----TCRLNGLQEHSPMRIILDPH-FKLSLDSKIIKTALL 242
           ++DA+LVG GT  ADDP L         +      P+RI+LD     +   ++++  A  
Sbjct: 193 EADAVLVGAGTARADDPHLAARLPAPAPDAPAPVQPLRIVLDSDATAVRPGARVLDDA-- 250

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAV 298
           AP ++    D     L     ++ ++     +    L  LL  L  R V S+L+EGGA +
Sbjct: 251 APTLVAVAGDADARHLEG-HPHVELLRLPRTNGGLDLTALLAALHARSVRSVLLEGGARL 309

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323
           A +F+ +  VD ++ Y +  ++G G
Sbjct: 310 AGAFVAAGAVDRVVGYLAPALLGAG 334


>gi|187735315|ref|YP_001877427.1| riboflavin biosynthesis protein RibD [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425367|gb|ACD04646.1| riboflavin biosynthesis protein RibD [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 356

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 114/364 (31%), Positives = 176/364 (48%), Gaps = 44/364 (12%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A++ +   +GLTS NP V  +IV +  VIG G     G PHAE +A+ +    
Sbjct: 12  DDCWMNMAIKLASNGIGLTSPNPCVGAVIVHENQVIGSGFHKKAGLPHAEREAIADGVAN 71

Query: 67  ARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                   +T YVTLEPCS  G++PPC   I++   +RVV   +DP+ +  G     L Q
Sbjct: 72  GNAPLFADSTLYVTLEPCSTSGKTPPCTDAILKYRFKRVVYGSEDPNPKHRGAAADILEQ 131

Query: 122 KGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI V R ++E E    +  +    +E R  +  K A+S D  I  +   S  +T   S+
Sbjct: 132 AGIKVTRGVLEKECDRLIRRFRVNMLEGRPWVIAKSAMSLDGRISRSPERSQWLTNEKSR 191

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCR-----LNGLQEHSPMRIILDPHFKLSLDSK 235
           + VH LRA+ DA+L G  TV  D+P LT R     ++ L+E  P RII      L+ D+ 
Sbjct: 192 SFVHTLRAECDAVLTGGNTVRLDNPSLTIRKPDRPVSPLKEQ-PWRII------LTHDAS 244

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINI--IYCDCRDLKKLLTILVGRGVTSLLVE 293
            I              D   L   FR + + +  ++     LKKL      + + ++L+E
Sbjct: 245 SIPA------------DSICLTDEFRDRTLVVENVFSYLELLKKLYN---DKKIGTILLE 289

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG---EGGIPSPL--EEGYLEKNFMCVRRDYFGS 348
            G  +   F+ + LVD  + + + I+IG   +G  P P    E +LE+  + +    FG 
Sbjct: 290 AGGCLVREFLKAGLVDEWVGFYAPIIIGGGADGVAPGPFLEHEAHLEQPVVNI----FGG 345

Query: 349 DVCL 352
           DVC+
Sbjct: 346 DVCI 349


>gi|282859870|ref|ZP_06268958.1| riboflavin biosynthesis protein RibD [Prevotella bivia JCVIHMP010]
 gi|282587273|gb|EFB92490.1| riboflavin biosynthesis protein RibD [Prevotella bivia JCVIHMP010]
          Length = 314

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/354 (30%), Positives = 169/354 (47%), Gaps = 54/354 (15%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
           M     D  +M   L+ +     L   NP V  +IV  +G +IG G     G  HAEV A
Sbjct: 1   MERQDIDEMYMRRCLQLATNGKLLAKPNPMVGAVIVSNEGRIIGEGYHVRCGEEHAEVNA 60

Query: 60  LEEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
                +E       +T YV+LEPCSH+G++PPCA  II+ G++RVV    DP  +V GRG
Sbjct: 61  FASVRKEDESLLSDSTIYVSLEPCSHFGKTPPCANLIIKKGVKRVVCGCVDPFSKVQGRG 120

Query: 116 LQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           +Q + + GI V   ++E+E  +  + ++T   ++R +I LK A +++  +G+ G G + I
Sbjct: 121 IQRIREAGIEVTVGVLEAECLVLNNRFITFNTQERPYIILKWAQTENGFMGVKG-GVLKI 179

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           +   +K  VH LR++ DAILVG  T   + P+L  R       +P +++L         S
Sbjct: 180 STPFTKMLVHKLRSECDAILVGRNTEEQESPQLNVR--DWSGRNPQKVVL---------S 228

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
             + TA+                                D+  LL  L      +L+VEG
Sbjct: 229 STLPTAI-------------------------------HDIPSLLQQLYHDKCQTLIVEG 257

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
           GA    +FI S + D I +  S   + E GI +P     L K+   +R++YFG+
Sbjct: 258 GATTLETFIRSGMYDEIRVEVSPTTVRE-GIKAP----QLPKDVSVIRKEYFGN 306


>gi|114777001|ref|ZP_01452021.1| RibD [Mariprofundus ferrooxydans PV-1]
 gi|114552522|gb|EAU54982.1| RibD [Mariprofundus ferrooxydans PV-1]
          Length = 379

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/320 (33%), Positives = 155/320 (48%), Gaps = 20/320 (6%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
            M  A+  ++   G T  NP V  ++V  G V+G G     G PHAE  AL+ AG+ ARG
Sbjct: 28  LMLQAIELAQRGGGTTHPNPRVGAVVVNRGEVVGVGWHKRAGGPHAEAVALQVAGKRARG 87

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI----- 124
            T YVTLEPCS +GR+P C + I   GI+ VV    DP+ ++SG G + L   GI     
Sbjct: 88  GTLYVTLEPCSAHGRTPACTEAIRRAGIKHVVYASPDPNPQMSG-GHKILEAAGISVTAG 146

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           ++    E+    F H   T     R ++  K A+S D  +      S  I+G  S+    
Sbjct: 147 VLREQAEALNIPFFHYLRT----GRPYVIAKAAISLDGKMATRTHHSQWISGEASRLHAQ 202

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIIL---DPHFKLSLDSKIIKTAL 241
            LRA SDAI+VG GT+  D+P LT R        P+R+++    P F    D K++    
Sbjct: 203 GLRAASDAIIVGAGTLKHDNPSLTVRGVPAVGDVPLRVVMCFETPKF--FADCKLLSAEA 260

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
                + + N        +R+  I +       L  +L  L   G   LL+EGG  +  S
Sbjct: 261 PTRFYVRSINTH---TEQWREAGIEV--EQVTSLAGVLKHLAEDGRLMLLLEGGGELHAS 315

Query: 302 FINSRLVDSIILYRSQIVIG 321
           F+ +R  D ++LY++ I+IG
Sbjct: 316 FLEARFTDELVLYQAPILIG 335


>gi|312887826|ref|ZP_07747413.1| riboflavin biosynthesis protein RibD [Mucilaginibacter paludis DSM
           18603]
 gi|311299645|gb|EFQ76727.1| riboflavin biosynthesis protein RibD [Mucilaginibacter paludis DSM
           18603]
          Length = 343

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/350 (31%), Positives = 169/350 (48%), Gaps = 26/350 (7%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA-------LEEA 63
           M   L  ++  +G  S NP V  +IV  G +IG G     G  HAEV A        ++A
Sbjct: 1   MLRCLELAKLGLGSVSPNPMVGAVIVHQGRIIGEGYHQRYGEAHAEVNAVNNVINRFDDA 60

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            +    +  YV+LEPC+HYG++PPCA  II+  I  VVV   DP  +V+G+G++ L   G
Sbjct: 61  AQLLSESVIYVSLEPCAHYGKTPPCADLIIKHQIPEVVVGCRDPFDQVNGKGIEKLQAAG 120

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + V   ++E E       + TR ++ R +I LK A ++D     A    + ITG  S+  
Sbjct: 121 VKVTVGVLEKECLDLNKRFFTRILKHRPYIILKWAQTEDCFFAPADQSQLWITGEESRKL 180

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  R + DAILVG  T   D+P+L  R    +  SP RI++D   +LS +  +    + 
Sbjct: 181 VHQWRGEEDAILVGKNTAAIDNPQLNVRYGPGK--SPKRIVIDRRLELSKELYLFDQTVE 238

Query: 243 APVI--IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
             V   + TE D  V  ++    N  +        + +L  L  + + S+++EGGA    
Sbjct: 239 TFVFNEVKTEFDGKVKYISLEDFNYYV-------PQYILYQLYLQDIQSVIIEGGATTLA 291

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
            FI   L D   ++   I + + GI +P  +G +      V  D  G+DV
Sbjct: 292 HFIKDGLWDEARIFTGAITL-KKGIQAPQIKGDV------VSEDRVGNDV 334


>gi|148909999|gb|ABR18084.1| unknown [Picea sitchensis]
          Length = 457

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/301 (32%), Positives = 161/301 (53%), Gaps = 22/301 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DA++M   +  ++  +G TS NP V C+IVKDG ++G+G     G PHAEV AL EAG +
Sbjct: 91  DAQYMRMCISLAKKALGCTSPNPMVGCVIVKDGHIVGQGFHPKAGEPHAEVFALREAGTK 150

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GATAYV+LEPC+HYGR+PPC Q +I+  + RVVV + DP+  V+ +G+  L   GI V
Sbjct: 151 AEGATAYVSLEPCNHYGRTPPCTQALIQARVGRVVVGMVDPNPIVASKGVATLRNSGIDV 210

Query: 127 DRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQD-NMIGMAGCGSVPITGFISKNQVH 184
              +E +  +    AY+ R +  +  IT++ ++S D  M+   G G+    G+ SK    
Sbjct: 211 TVGVEEKLCQTMNEAYIHRILTGKPFITMRFSMSLDGGMLDDLGDGAAEEGGYYSK---- 266

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            +  Q D ++V   T L D+  L     G ++  P+RI++     L +DS I  T L   
Sbjct: 267 -MLQQYDGVIVSDQT-LYDNLNLLSSEAGAKQ--PLRIVVTRTLVLPIDSLIFNTDLAPT 322

Query: 245 VIIVTEN------------DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
           +++  E             +   + +  R++ + ++     ++  +L I   RG+ S+ +
Sbjct: 323 LVLADEKAIVDNLQSAGKLNGQTMDMLLRQRGVEVVILKKLEIDSVLDICSQRGLCSVFI 382

Query: 293 E 293
           +
Sbjct: 383 D 383


>gi|332291081|ref|YP_004429690.1| riboflavin biosynthesis protein RibD [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169167|gb|AEE18422.1| riboflavin biosynthesis protein RibD [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 333

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 154/315 (48%), Gaps = 34/315 (10%)

Query: 28  NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ----ALEEAGEEARGATAYVTLEPCSHYG 83
           NPSV  ++V +  +I  G T+  G PHAEV     A     E    +T YV+LEPCSH+G
Sbjct: 25  NPSVGAVLVHNNKIIAEGYTSDYGGPHAEVNCIAFAKANTPELIAKSTLYVSLEPCSHWG 84

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYL 142
           ++PPCA  ++  GI++VV+   DP  +V+G G++ L Q G+ V   + E E +     + 
Sbjct: 85  KTPPCADLVVASGIKKVVIGTIDPFAKVAGAGIKRLIQAGVDVTVGVQEKECQEINKRFF 144

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMA---GCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199
           T   +KR ++ LK A + D  I          V IT   S+  VH  R++  AILVG  T
Sbjct: 145 TYHEKKRPYVILKWAETADGFIAPKTRDAQQPVWITNPYSRQLVHKWRSEEMAILVGGKT 204

Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
           VL D+P LT R    +  +P+R+++D   K +LD+ +      A  +++   D  +++  
Sbjct: 205 VLEDNPSLTTR--DWEGKNPIRVVIDT--KGNLDNNLTVFNQEAETLVIASTDSQLIS-- 258

Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
                                 L  +G+ S+++EGGA     FI++ L D   +++    
Sbjct: 259 --------------------ETLYDKGIQSVIIEGGAQTLQHFIDANLWDEARIFKGNTS 298

Query: 320 IGEGGIPSPLEEGYL 334
             +G     L + +L
Sbjct: 299 FSKGTKAPQLSQHFL 313


>gi|256819357|ref|YP_003140636.1| riboflavin biosynthesis protein RibD [Capnocytophaga ochracea DSM
           7271]
 gi|256580940|gb|ACU92075.1| riboflavin biosynthesis protein RibD [Capnocytophaga ochracea DSM
           7271]
          Length = 331

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 161/333 (48%), Gaps = 29/333 (8%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D  +M   ++ +   +G T  NP V  +IV +G +IG G     G  HAEV+A+    
Sbjct: 7   TIDEWYMRRCIQLAYNGLGSTYPNPMVGSVIVYEGRIIGEGWHQKAGEAHAEVRAITSVK 66

Query: 65  EEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           +++    +T YV+LEPC H+G++PPCA  II   I RVV+   DP  +V G+G++ L   
Sbjct: 67  DKSLLPKSTIYVSLEPCCHFGKTPPCADLIIAHKIGRVVIGTTDPFAKVHGKGIEKLRNA 126

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP---ITGFI 178
           G  ++  + E+E +     + T   + R +I LK A ++D  I       V    I+   
Sbjct: 127 GCEVIVGVCEAECRELNKRFFTFHEKHRPYIILKWAETRDGFIAPLHKEEVAPHWISDVY 186

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H +R +   I+VG+GTVLAD+P L  R       +P+RII+DP            
Sbjct: 187 ARQTAHQMRTEEQGIVVGVGTVLADNPSLDSR--SWYGRNPVRIIIDP------------ 232

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNI-NIIYCDC-------RDLKKLLTILVGRGVTSL 290
             L +P      ND         + ++  +I+ D        + L+++   L    + S+
Sbjct: 233 -KLRSPKEFAVWNDRTTTLFFTEETSVPEMIHTDFFTIDFKHKPLEQICAKLYEMNLQSM 291

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           +VEGGA     FI+  L D  +++   I  GEG
Sbjct: 292 IVEGGAYTLQQFIDEGLWDEAVVFTGDICFGEG 324


>gi|295395079|ref|ZP_06805288.1| riboflavin biosynthesis protein RibD [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294972027|gb|EFG47893.1| riboflavin biosynthesis protein RibD [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 336

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 157/348 (45%), Gaps = 47/348 (13%)

Query: 23  GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR-GATAYVTLEPCSH 81
           G+   NP V   ++ D      G     G PHAE  A+  A   +  GAT  VTLEPCSH
Sbjct: 18  GVRGANPLVGAAVLWDDGTFTTGYHQGAGTPHAEPDAIRNASPRSTTGATLVVTLEPCSH 77

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA- 140
            GR+ PC Q II+ GI RVV+   DP+ + SG G Q L++ G+ V   +   G+ + H  
Sbjct: 78  TGRTGPCTQAIIDAGITRVVIASRDPNPQASG-GAQTLTEAGVEV-LFLNDLGQSWAHEV 135

Query: 141 ----------YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
                     + T     R  IT KIA S D  +      S  ITG  S+   HL RA+ 
Sbjct: 136 ATQAHRLNARWFTAVTHDRPFITAKIAQSLDGCVAARDRTSQWITGAESRAHAHLTRARV 195

Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
           DAI VG GT  AD+P LT R  G   H P+ ++               TAL         
Sbjct: 196 DAIAVGTGTAHADNPRLTAR-TGDSPHQPIPVVFG------------TTALPG------- 235

Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
             D  L    R    + +    RDL++       RGV+ LL+EGG  +   F+   LVD 
Sbjct: 236 --DSHLGRNPRTLTYSEVGAGLRDLRR-------RGVSHLLLEGGPTLMAHFLQHDLVDE 286

Query: 311 IILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR---DYFGSDVCLEYI 355
           + +Y + +++G+ GI +PL    L +    V     +  GSD    ++
Sbjct: 287 LHVYTAPLLLGD-GIRAPLSVDTLAQGLRFVPDAPPEALGSDTFTRFM 333


>gi|168704914|ref|ZP_02737191.1| riboflavin biosynthesis protein RibD [Gemmata obscuriglobus UQM
           2246]
          Length = 355

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/243 (37%), Positives = 129/243 (53%), Gaps = 4/243 (1%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  AL  +    G    NP V  +++   G  +G G     G PHAEV AL+ AG  ARG
Sbjct: 1   MRHALALAARGRGAVEPNPMVGAVVLDPTGKPVGEGWHQKFGGPHAEVFALQAAGARARG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
            T  VTLEPC H+G++PPC   ++  G+ RVV  + DP  RV+G GL  L   G+ V   
Sbjct: 61  GTLLVTLEPCCHHGKTPPCTDAVLRAGVARVVAAMADPFPRVAGGGLALLRAAGVDVQVG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + E++ +     YL      R  +  K A++ D  +      S  I+G  S+ +VH LR 
Sbjct: 121 LCEADARALNAPYLKLLSTGRPWVHAKWAMTLDGKLAARTGDSKWISGAESRRRVHELRG 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DAILVG GTV+ADDP LT R  G++   P R++L    +L    ++  TA  APV++ 
Sbjct: 181 RLDAILVGRGTVVADDPLLTARPAGVR--VPARVVLTASGELPAACQLRATAREAPVLVY 238

Query: 249 TEN 251
           T N
Sbjct: 239 TAN 241


>gi|6572094|emb|CAB63087.1| riboflavin-specific deaminase [Bartonella clarridgeiae]
          Length = 227

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 131/226 (57%), Gaps = 17/226 (7%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           +R  +TLK+A+S DN +G  G  ++ I+G IS +Q H+LRAQ+D I+VGIGT+LADDP+L
Sbjct: 6   QRCEVTLKMAISADNGVGKKGQSNLKISGEISHSQTHILRAQNDVIMVGIGTILADDPKL 65

Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI-- 265
            CRL GL+  SP+R+ILD + ++ LD+K+++TA   P  ++         L+ ++K I  
Sbjct: 66  DCRLPGLEMRSPIRVILDKNLRIPLDAKVVQTAANIPTWVICGT-----VLSKKRKKIAL 120

Query: 266 ---NIIYCDCRDLKKL------LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
               +  C       L      L +L  R + S+L+EGGA     F+N+  VD +I + +
Sbjct: 121 EQYGVTVCSVEVTNNLIPPLAILRLLYQRKINSVLLEGGAKTGEIFLNASCVDRLICFYA 180

Query: 317 QIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362
            I++G+  I +P  E YL + F  +     G+D   ++  K LC Q
Sbjct: 181 PIILGKDRIEAPHFESYLSE-FNKIEMRMLGNDRLYKWRRKILCSQ 225


>gi|257483265|ref|ZP_05637306.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 167

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 74/159 (46%), Positives = 100/159 (62%), Gaps = 1/159 (0%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D  +M+ AL  +R  +  T  NP V C+IV+DG ++G G     G PHAEV AL +A
Sbjct: 6   AALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQA 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPCSH GR+PPCA  ++  G+ RVV  + DP+  VSGRGL  L   G
Sbjct: 66  GELARGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPEVSGRGLLRLMNAG 125

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           I V   ++ESE +     +L R    + +I +K+A+S D
Sbjct: 126 IGVQCGVLESEARALNKGFLKRMETGQPYIRVKMAMSLD 164


>gi|170017119|ref|YP_001728038.1| riboflavin biosynthesis protein RibD [Leuconostoc citreum KM20]
 gi|169803976|gb|ACA82594.1| Riboflavin biosynthesis protein RibD [Leuconostoc citreum KM20]
          Length = 347

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 104/346 (30%), Positives = 168/346 (48%), Gaps = 27/346 (7%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR--GATAYVTLEPCSHY 82
           T  NP V  +IVK+G ++  G     G  HAE+ A E   ++     +T YVTLEPC   
Sbjct: 22  TYENPRVGAIIVKNGQILATGYHHSFGAAHAEINAFENLRDQTDIVDSTMYVTLEPCFVT 81

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF---LH 139
           G+   CA  I + G++RVVV   DP+    GR + +L Q GI VD +   + +I     +
Sbjct: 82  GKVGACALAIAQWGVKRVVVGSFDPNPDTHGRSVTFLRQAGIRVDVLGTEDSQILNPGFY 141

Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199
            Y  R +    ++ LK+A S ++ +  +   S  IT  ++   VH  RA   AIL+G  T
Sbjct: 142 HYFERHL---PYVQLKLAESANHFVASSQGQSTKITDRLADIDVHKERASKSAILIGSET 198

Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
           +L D P LT R   +    P+R+++D   +L   +K+ +       +I T N D      
Sbjct: 199 MLIDQPNLTVRHVPINHPQPLRVVIDRRGRLQ--NKMDRAT--NNWLIFTTNTD------ 248

Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
           F K+  N++      L  +LT L  + + S++VEGG ++  +F+ + L    I+Y +  +
Sbjct: 249 FAKQYDNVLLM-SHGLLSVLTSLASKNIQSVMVEGGPSLITAFLKANLWQEFIVYTADSI 307

Query: 320 IGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN--LCLQE 363
           + E G+PS      ++  F  V     G+ +   Y+      CLQE
Sbjct: 308 LSEDGVPS------VQPLFNSVSSYRVGNTLKSRYLNDRSVSCLQE 347


>gi|323436092|ref|ZP_08088234.1| riboflavin biosynthesis protein RibD [Dokdonia donghaensis MED134]
 gi|321496407|gb|EAQ38739.2| riboflavin biosynthesis protein RibD [Dokdonia donghaensis MED134]
          Length = 346

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 152/309 (49%), Gaps = 35/309 (11%)

Query: 28  NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ----ALEEAGEEARGATAYVTLEPCSHYG 83
           NPSV  ++V +  +I  G T+  G PHAEV     A     E    +T YV+LEPCSH+G
Sbjct: 38  NPSVGAVLVHNNTIIAEGYTSAYGGPHAEVNCIAFAKANTPELIAKSTLYVSLEPCSHWG 97

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYL 142
           ++PPCA  +I+ GI+RVV+   DP  +V+G G++ L Q G+ V   ++E E +     + 
Sbjct: 98  KTPPCADLVIDSGIKRVVIGTIDPFAKVAGAGIKKLMQAGVDVTVGVLEKECQEVNKRFF 157

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGS---VPITGFISKNQVHLLRAQSDAILVGIGT 199
           T   EKR  I LK A + +  I  A       V IT   S+  VH LR++   ILVG  T
Sbjct: 158 TYHNEKRPFIILKWAETANGFIAPASRDKQEPVWITNSHSRQLVHKLRSKEMGILVGGKT 217

Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
           V+ D+P LT R       +P RI++D    L     I      AP I++ ++D   +   
Sbjct: 218 VIEDNPTLTTR--DWHGSNPTRIVIDTQGNLPKKLHIFNNE--APTIVLKDSDPKSI--- 270

Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
                       C++       L    + S++VEGGAA    FI++ L D   ++ + + 
Sbjct: 271 ------------CKE-------LFEHNIQSVIVEGGAATLQRFIDAALWDEASVF-TGLT 310

Query: 320 IGEGGIPSP 328
               GI +P
Sbjct: 311 NFNAGIKAP 319


>gi|325103646|ref|YP_004273300.1| riboflavin biosynthesis protein RibD [Pedobacter saltans DSM 12145]
 gi|324972494|gb|ADY51478.1| riboflavin biosynthesis protein RibD [Pedobacter saltans DSM 12145]
          Length = 347

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 113/361 (31%), Positives = 173/361 (47%), Gaps = 40/361 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+ FM  A+  +    G  S NP V  ++  DG +IG G     G  HAEV A++   + 
Sbjct: 4   DSIFMQRAIDLALLGAGSVSPNPMVGAVVAHDGQIIGEGYHKKYGESHAEVNAIQNVIDN 63

Query: 67  ARGA-------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
            + A       T YVTLEPC+HYG++PPCA  II+  I R+V+   DP   V+G+G++ L
Sbjct: 64  FKNADHLLKQSTIYVTLEPCAHYGKTPPCADLIIKHCIPRIVIGCRDPFDSVNGKGIEKL 123

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              G  ++  ++E+E       + T+  ++R ++ LK A + +            ITG  
Sbjct: 124 LIAGKEVITGVLETECLELNRRFFTQIQKQRPYVILKWAQTANGFFAPENHQQRWITGKE 183

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILD------PHFKLSL 232
           SK  VH  RA+ D ILVG  T + D+P+L  RL  ++  +P R ++D      PH  L L
Sbjct: 184 SKILVHQWRAEEDCILVGKNTAIIDNPQLNVRL--VKGKNPKRAVIDKNLALPPHLNL-L 240

Query: 233 DSK---IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
           D+K    I  A+ + ++              + K I+I   D    + +L  L  + V S
Sbjct: 241 DNKQETFIFNAIESKIV-------------GKNKYISIEDFDHFLPQYILYQLYLQDVQS 287

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           ++VEGG     SFI   L D   ++ S+    E GI +P  +G        +  D  GSD
Sbjct: 288 VIVEGGVTTLQSFIKHNLWDEARIFYSEDY-WENGINAPTIKG------NQISTDKVGSD 340

Query: 350 V 350
            
Sbjct: 341 T 341


>gi|160872316|ref|ZP_02062448.1| riboflavin biosynthesis protein RibD [Rickettsiella grylli]
 gi|159121115|gb|EDP46453.1| riboflavin biosynthesis protein RibD [Rickettsiella grylli]
          Length = 360

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 105/359 (29%), Positives = 161/359 (44%), Gaps = 23/359 (6%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-EA 67
           +++  AL  +    G  S NP V  ++VKD  VI +G     G PHAEV+A++       
Sbjct: 7   QYLELALSLAEIRRGFCSPNPCVGAILVKDNTVIAKGYHHASGLPHAEVEAIQSVNPVHV 66

Query: 68  RGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           +GAT YVTL+PC H   ++PPC   II+ GI +V+    DP+  VS      L   GI  
Sbjct: 67  KGATLYVTLQPCCHSAKKTPPCTDLIIKSGIVKVIYGFQDPNPAVSHHTDNLLKHAGIEC 126

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
            +        F  +Y+     KR   T K+A+S D  I       V +TG  ++   H  
Sbjct: 127 IQHALPAIDNFYASYVYWWTCKRPFTTAKLALSLDGKIAGKNGKRVQLTGEKAQQFTHHH 186

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R ++DAIL    T+  DDP L  RL+      P+  ILD H  LS  SKI ++A     +
Sbjct: 187 RKKADAILTTAKTISHDDPLLNSRLDHKIYKKPL-YILDTHLNLSTTSKIFESAA---SV 242

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL-----VG-RGVTSLLVEGGAAVAH 300
            +  +        F+++  +  +   +  K  L ++     +G  G   L VE G  +  
Sbjct: 243 TIFHHSSVCKVYQFKEQQPDTRFIPIKHDKNGLNLIAVFDHIGLDGKIDLWVEAGGHLFQ 302

Query: 301 SFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           + I + L+    +Y +   +GE        P+PL++G   K          G D C E+
Sbjct: 303 ALIQNNLLQHAFIYVAPRWLGENAQTAFHFPNPLKKGIPMKGIT------LGRDTCFEF 355


>gi|33866124|ref|NP_897683.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Synechococcus sp. WH 8102]
 gi|33639099|emb|CAE08105.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Synechococcus sp. WH 8102]
          Length = 354

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 106/311 (34%), Positives = 162/311 (52%), Gaps = 8/311 (2%)

Query: 23  GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G TS NP V  +++ ++G ++G G  A  G PHAEV AL +AG  A G T  VTLEPC H
Sbjct: 18  GRTSPNPLVGAVVLNREGRLVGEGFHARSGEPHAEVGALAQAGTAAAGGTLIVTLEPCCH 77

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DRMMESEGKIFLHA 140
           +GR+PPC++ +++ G+ RVVV ++DPD RV+G G+  L + G++V   ++  E      A
Sbjct: 78  HGRTPPCSRAVLQAGVARVVVALEDPDPRVAGGGIAQLRKAGVVVITGVLRQEAAEQNRA 137

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +L R    R    LK A+  D    +    S  I+G  S+  VH LRA  DA++VG GTV
Sbjct: 138 FLHRVRTGRPWGVLKWAMGLDGRTALPNGTSQWISGADSRRWVHQLRAGCDAVIVGGGTV 197

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
            ADDP LT R  G ++  P+R++L     L  ++++  TA  A ++       P  A   
Sbjct: 198 RADDPLLTSR--GRRDPEPLRVVLSRGLDLPAEAQLWDTASAATLVA----HGPEAAGKQ 251

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
                  +  +  +   L+  L  RG   +L E G+ +A + I    V  +    +  ++
Sbjct: 252 APNGPERLELEQCEPLPLMQHLAARGCNQVLWECGSELAAAAIRQGCVQEVAAVLAPKLM 311

Query: 321 GEGGIPSPLEE 331
           G     +PL E
Sbjct: 312 GGVAARTPLGE 322


>gi|256421260|ref|YP_003121913.1| riboflavin biosynthesis protein RibD [Chitinophaga pinensis DSM
           2588]
 gi|256036168|gb|ACU59712.1| riboflavin biosynthesis protein RibD [Chitinophaga pinensis DSM
           2588]
          Length = 352

 Score =  142 bits (359), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 168/352 (47%), Gaps = 27/352 (7%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           SSFD  +M   L+ ++   G  + NP V  ++V +G +IG G     G  HAEV  +   
Sbjct: 3   SSFDEFYMQRCLQLAKLGAGNVAPNPMVGAVLVYEGRIIGEGYHRQYGFAHAEVNCVHSV 62

Query: 64  GEEAR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
             E +     AT YV+LEPC+HYG++PPCA+ I+   I  VV+   D   +V+G+G+  L
Sbjct: 63  KPEDQHLIPAATMYVSLEPCAHYGKTPPCAELIVSQQISTVVIGCVDTFSQVAGKGIGIL 122

Query: 120 SQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI V   ++E+  +     + T   +KR +I LK A + D  +  A    V I+  +
Sbjct: 123 KAAGITVRTGVLEAAARELNSRFFTFHEQKRPYIILKWAQNADGFMAGADGRPVRISNPL 182

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           +   VH  R++   ILVG  T +AD+P L  RL       P+RI++D   K   +  +  
Sbjct: 183 TDRLVHRWRSEEMGILVGTNTAVADNPRLNNRL--WTGKDPVRIVIDRTLKTPREYHLWH 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGA 296
               A + I  E        A ++    ++  D     L +L+ IL  R + S+LVEGGA
Sbjct: 241 GP--ATLFITAEQ-------AEKQDTAEMVTADFSQPLLPQLMKILHDRRILSVLVEGGA 291

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRD 344
            V      + L D      ++++IG+     G+ +P+    L K    +  D
Sbjct: 292 HVLREMTEAGLWDE-----ARVIIGDNPFALGVKAPVLPHALLKETQILESD 338


>gi|25028272|ref|NP_738326.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Corynebacterium efficiens YS-314]
 gi|23493556|dbj|BAC18526.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Corynebacterium efficiens YS-314]
          Length = 328

 Score =  142 bits (358), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 108/313 (34%), Positives = 148/313 (47%), Gaps = 36/313 (11%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATA 72
           A+  S   VG TS NP V  +I+  DG + G G T   G  HAEV AL  AG  ARG TA
Sbjct: 10  AIEASEEVVGTTSPNPPVGAVILDADGELAGIGATQPPGGAHAEVMALAAAGPRARGGTA 69

Query: 73  YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
            VTLEPC+H GR+ PC+Q +I+ GI RV     DP  + +G G   L Q G  VD  +  
Sbjct: 70  VVTLEPCNHTGRTGPCSQALIDAGIARVFYANPDPFPQAAG-GADHLRQAG--VDTHLLG 126

Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
                L  +L      R HITLK A + D         S  ITG  ++  VH  R + DA
Sbjct: 127 LPVPTLSPWLRATKLGRPHITLKFAGTLDGFAAATDGTSQWITGETARAHVHADRTRRDA 186

Query: 193 ILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251
           I+VG GT L D+P LT R   GL +H P R+++                           
Sbjct: 187 IIVGTGTALTDNPSLTARGPAGLYDHQPRRVVI--------------------------G 220

Query: 252 DDPVLALAFRKKNINII-YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
             PV A      N++ + +     + + L  L   G   +L+EGG  +A + + + L+D+
Sbjct: 221 RRPVPA----GSNLDRLGFEQYPGIDEALAALWESGCRDVLLEGGPTLAGAMLRAGLIDA 276

Query: 311 IILYRSQIVIGEG 323
           I  Y +  ++G G
Sbjct: 277 IRAYVAPAILGAG 289


>gi|222151702|ref|YP_002560858.1| hypothetical protein MCCL_1455 [Macrococcus caseolyticus JCSC5402]
 gi|222120827|dbj|BAH18162.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 341

 Score =  142 bits (358), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 165/358 (46%), Gaps = 34/358 (9%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +++ A    +W  G T  NP+V C+IVKD  ++G G     G  HAEV A+  AG  A+G
Sbjct: 2   YINKAFELVKWTEGQTGMNPAVGCVIVKDDRIVGIGAHLTEGEAHAEVNAIHMAGSHAQG 61

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           AT Y TLEPCSH+G++PPC + I+  GI +VV      DV +S  G++++  + I V+++
Sbjct: 62  ATLYCTLEPCSHHGKTPPCTEKIVAAGISKVVYAA--SDVTLSS-GVKYMRSESIEVEKV 118

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
                  F   + T +     ++T+K+A + D         S  IT   S+   H +R +
Sbjct: 119 ECRAIDDFYAPFFTSKTSSLPYVTIKMATTVDGKTADDESISKWITNEKSRAHAHEVRYR 178

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DAI+VG  T   D P L  RL                +K     K+I T    P ++ T
Sbjct: 179 MDAIMVGYNTYKKDIPTLDARL----------------YKDKRIKKVIVTN--GPFVLNT 220

Query: 250 ENDDP--------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           ++D+         V A+    + + +I+      + +L  L    + +LL+EGG     +
Sbjct: 221 QDDNDYDRSRLIIVSAIEQHIEGVTVIHVPHLSPEHILKALYNERIRNLLIEGGMQTIRT 280

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354
           FI ++  + I  Y +  ++G       L    L       +F  V  + F  DV L Y
Sbjct: 281 FIEAKYYNEIHHYIAPKLLGGTSKHQFLTTDTLSSMRDMTHFNLVSVNQFDDDVLLIY 338


>gi|42524894|ref|NP_970274.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bdellovibrio bacteriovorus HD100]
 gi|39577104|emb|CAE78333.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bdellovibrio bacteriovorus HD100]
          Length = 394

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 178/338 (52%), Gaps = 26/338 (7%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE-AGEEAR 68
           MS A+  +       S NP V  +++   G  +  G   + G PHAEV AL+  + E+ +
Sbjct: 22  MSLAISEAYQGAARVSPNPLVGAVVLDAQGGFLSAGHHEFYGGPHAEVNALKNLSPEQLK 81

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI---- 124
           GA A+VTLEPC+H G++P CA+ + +  +++V   + DP+  V+G+G + L Q  I    
Sbjct: 82  GAHAFVTLEPCAHEGKTPSCAKMMAKLPLKKVTFGLIDPNPLVAGQGAEILRQARIEAEV 141

Query: 125 ------IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
                 ++D  +++E +    A+L    +K+  ++LK+A S D  + +    S  ITG  
Sbjct: 142 FSSANPVLDAKIKTELEEVCEAFLWNFRKKKVFVSLKMASSLDGQVALRSGESQWITGPE 201

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII-----LDPHF-KLSL 232
           S+  VH +RA  D ILVG GT+  D+P L  R   + + + + ++     L P+F KL L
Sbjct: 202 SREYVHYIRACHDGILVGKGTIDFDNPSLNIRHPQITKKNKVIVVDGEAELLPNFTKLKL 261

Query: 233 DSKIIKTALLAPVIIVTENDDPVLAL-AFRKKNINIIYCDCR-----DLKKLLTILVGRG 286
               +  +      +  E  + V  L     K+ +++Y   R     DL+ LL  L  +G
Sbjct: 262 SE--VHASEDVIWCVAEELREKVEKLRGTLVKSPDVVYVKTRVGGDLDLEDLLAQLYQKG 319

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           + S++VEGGA  A SF++  LV+ + ++++ I++G GG
Sbjct: 320 LRSVMVEGGAFTASSFVSYHLVNRLYMFQAPIIMGSGG 357


>gi|260904122|ref|ZP_05912444.1| riboflavin biosynthesis protein RibD [Brevibacterium linens BL2]
          Length = 359

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/328 (33%), Positives = 165/328 (50%), Gaps = 39/328 (11%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSV-ACLIVKDG-IVIGRGVTAYGGCPHAEVQALE 61
           +  +   MSAAL+ +R   G    NP V A ++ +D  IV+G    A  G PHAEV A+ 
Sbjct: 6   TELETTAMSAALQAARN--GHRGANPLVGAAILTRDSQIVVGH--HAGAGSPHAEVDAIT 61

Query: 62  EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            A   G +   +T +VTLEPC+H GR+ PC Q II+ GI  VV  + D +   +G G   
Sbjct: 62  TAIDLGVDLTASTLFVTLEPCNHIGRTGPCTQAIIDAGIPEVVFALSDSNGVAAGGGAT- 120

Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L++ G+ V   +  +    L+A  +R V+ +R  +T+KIA S D M+  +   S  IT  
Sbjct: 121 LAEAGVRVRSGLGHDESSALNARWSRAVDAERPFVTVKIAQSLDGMVAASDGTSQWITSA 180

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSK 235
            S+   H  R++ D ILVG GTVLADDP L  R  G    E  P+ I+L      SL S+
Sbjct: 181 ASRVHSHKYRSRVDGILVGTGTVLADDPRLNARGPGGDPLESQPVPIVLG---LTSLPSE 237

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
                                  +F   N + ++   RD+   L  L  RG+  +LVEGG
Sbjct: 238 -----------------------SFLALNPDTVHLRTRDITAALGELHARGMRHILVEGG 274

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG 323
            +V  +F  + +VD +  Y++ +++G G
Sbjct: 275 PSVLGAFFAAGVVDEVFCYQAPLLVGAG 302


>gi|182439882|ref|YP_001827601.1| putative riboflavin/cytosine deaminase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178468398|dbj|BAG22918.1| putative riboflavin/cytosine deaminase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 366

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 177/347 (51%), Gaps = 13/347 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE 62
           ++ D   M  A+  +   +G TS NP V C+I    G V G G     G PHAEV AL  
Sbjct: 3   TAADITAMRRAISLAARGLGSTSPNPVVGCVITDAAGAVAGEGFHQRAGGPHAEVHALRA 62

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  ARG TAYVTLEPC H GR+ PC+Q ++  GI RVV  V DP+   +G G   L   
Sbjct: 63  AGGRARGGTAYVTLEPCDHTGRTGPCSQALLAAGISRVVYAVADPNPGAAGGG-DTLRHA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+  +  ++  E +    A+LT     R ++  K A + D  I  A   S  IT   ++ 
Sbjct: 122 GVRAEGGLLADEAEAGNAAWLTSVRRGRPYVLWKYAATLDGRIAAADATSRWITSPEARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPH-FKLSLDSKIIKT 239
            VH LRA++DA+LVG GT   DDP+L  R ++G  +  P+R+++D +   +   ++++  
Sbjct: 182 DVHRLRAEADAVLVGSGTARTDDPQLAVRGIDGATQ--PLRVVVDTNATAVKPGARVLDA 239

Query: 240 ALLAPVIIVTENDDPV--LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                 ++   +D P   L  A   +          DL  LL  L  RGV S+L+EGG  
Sbjct: 240 TAA--TLVAVADDAPAGHLPEAAVLRLPRAATGPGLDLDALLGALHERGVRSVLLEGGPT 297

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           +A +F+ +  VD ++ Y + +++G G  P+ L +  +      +R D
Sbjct: 298 LAGAFVAAGKVDKVVGYLAPVLLGAG--PAALADAGISTIAGALRLD 342


>gi|228472970|ref|ZP_04057727.1| riboflavin biosynthesis protein RibD [Capnocytophaga gingivalis
           ATCC 33624]
 gi|228275552|gb|EEK14329.1| riboflavin biosynthesis protein RibD [Capnocytophaga gingivalis
           ATCC 33624]
          Length = 347

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 163/331 (49%), Gaps = 16/331 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D R+M   L  +   +G T  NP V  +IV  G +IG G     G PHAEV A+    
Sbjct: 2   TIDQRYMQRCLSLAGKALGYTYPNPLVGSVIVHQGKIIGEGWHTKAGEPHAEVNAIASVK 61

Query: 65  EEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           + +  + +  YV LEPC+H+G++PPCA  IIE  I +VV+   D   +V+G+G++ L + 
Sbjct: 62  DSSLLKESVLYVNLEPCAHFGKTPPCADLIIEKEIPKVVIGCMDIFSKVAGKGIERLQKA 121

Query: 123 G-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG---MAGCGSVPITGFI 178
           G  +V  ++E+E +     + T   + R +I LK A +++ +I          V I+   
Sbjct: 122 GREVVVGVLENECQALNTRFFTFHSKGRPYIILKWAQTRNGLIAPLHQEQQAPVWISNEF 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           S+   HL RA+  AILVG  TV  D+P LT R       +P+R++++    L LD+  + 
Sbjct: 182 SQQLTHLWRAEEGAILVGRTTVERDNPSLTVR--HWVGKNPLRLVIEGEHSL-LDTFNVF 238

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
                P ++ +    P         +   +  D     ++   L  R + SL+VEGGA V
Sbjct: 239 QG--EPTVVFSSKQSP----NTEHVSYQTLSSDLSMPNEVCNYLYDRQIQSLIVEGGAQV 292

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
              FI+  L D   ++  +    E GI +PL
Sbjct: 293 LQQFISEGLWDEARIFVGKSQFSE-GIKAPL 322


>gi|315224801|ref|ZP_07866622.1| riboflavin biosynthesis protein RibD [Capnocytophaga ochracea
           F0287]
 gi|314945204|gb|EFS97232.1| riboflavin biosynthesis protein RibD [Capnocytophaga ochracea
           F0287]
          Length = 331

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 159/333 (47%), Gaps = 29/333 (8%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D  +M   ++ +   +G T  NP V  +IV +G +IG G     G  HAEV+A+    
Sbjct: 7   TVDEWYMHRCIQLAYNGLGSTYPNPMVGSVIVYEGRIIGEGWHQKAGEAHAEVRAITSVK 66

Query: 65  EEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           +++    +T YV+LEPC H+G++PPCA  II   I RVV+   DP  +V G+G++ L   
Sbjct: 67  DKSLLPKSTIYVSLEPCCHFGKTPPCADLIIAHKIGRVVIGTTDPFAKVHGKGIEKLRNA 126

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP---ITGFI 178
           G  V   + E+E +     + T   + R +I LK A ++D  I       V    I+   
Sbjct: 127 GCEVTVGVCEAECRELNKRFFTFHEKHRPYIILKWAETRDGFIAPLHKEEVAPHWISDVY 186

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H +R +   I+VG+GTVLAD+P L  R       +P+RII+DP            
Sbjct: 187 ARQTAHQMRTEEQGIVVGVGTVLADNPSLDSR--SWYGRNPVRIIIDP------------ 232

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNI-NIIYCDC-------RDLKKLLTILVGRGVTSL 290
             L +P      ND         + ++  +I+ D        + L+++   L    + S+
Sbjct: 233 -KLRSPKEFAVWNDRTTTLFFTEETSVPEMIHTDFFTIDFKHKPLEQICAKLYEMNLQSM 291

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           +VEGG      FI+  L D  +++   I  GEG
Sbjct: 292 IVEGGGYTLQQFIDEGLWDEAVVFTGDICFGEG 324


>gi|262202280|ref|YP_003273488.1| riboflavin biosynthesis protein RibD [Gordonia bronchialis DSM
           43247]
 gi|262085627|gb|ACY21595.1| riboflavin biosynthesis protein RibD [Gordonia bronchialis DSM
           43247]
          Length = 333

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/319 (35%), Positives = 164/319 (51%), Gaps = 33/319 (10%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
            M  A+  S    G+++ NP V  +IV + G ++G G TA  G PHAE+ AL +AG  AR
Sbjct: 6   LMRQAITESAAAQGVSTPNPPVGAVIVDRAGTIVGVGHTAPPGGPHAEIVALTQAGAAAR 65

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           GATA VTLEPC+H GR+ PC+Q +I  G+  V   V DP+   +G G   L   G+ VD 
Sbjct: 66  GATAVVTLEPCNHTGRTGPCSQALIAAGVAHVCFGVADPNPTAAG-GADTLRAAGVSVDA 124

Query: 129 --MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             + +      L  +L RQ   R  +T+K+A S D  +  +   S  +TG  ++   H  
Sbjct: 125 GVLADEVAAGPLQPWLHRQTTGRPFVTVKLATSIDGRVAASDGTSQWVTGPAARAHAHER 184

Query: 187 RAQSDAILVGIGTVLADDPELTCRL-NGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAP 244
           R++ DAI+VG GT LADDP LT R  +G +  H P R+++  H  L  D+ +   A    
Sbjct: 185 RSRIDAIVVGTGTALADDPSLTARRPDGTRYPHQPTRVVVG-HRDLPADANLRDDAA--- 240

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
                    P+L +A R+            L  L   L       +LVEGG  +A +F+ 
Sbjct: 241 ---------PLLRVATREP--------AEVLDALDDAL------WVLVEGGPTLAGAFVA 277

Query: 305 SRLVDSIILYRSQIVIGEG 323
           + LVDS+  Y + +++G G
Sbjct: 278 AGLVDSVEAYVAPVLLGAG 296


>gi|330752436|emb|CBL87386.1| riboflavin biosynthesis protein [uncultured Flavobacteria
           bacterium]
          Length = 310

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/303 (33%), Positives = 150/303 (49%), Gaps = 33/303 (10%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--RGATAYVTLEPCSHYGRSPPC 88
           V CLIVKD  +IG G T   G  HAEV A++    +   + AT YVTLEPCSH+G++PPC
Sbjct: 2   VGCLIVKDDEIIGEGYTDPYGGSHAEVNAIKSVKNQELLKSATLYVTLEPCSHHGKTPPC 61

Query: 89  AQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVE 147
              I+   I RVV+   DP  +V G+G+  L   G  ++  + E+  K+    +LT   +
Sbjct: 62  CDLILSRQIPRVVIGCIDPHEKVCGQGIARLKASGCQVIVGVEEALCKLHHKRFLTYHTK 121

Query: 148 KRSHITLKIAVSQDNMIGMAGCGS---VPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
           KR +I LK A S++  +      S     I+G +S+  VH  RA+  AILVG  TV+ D+
Sbjct: 122 KRPYIILKWAQSKNGFVAPKNKNSNRAFWISGKLSRQLVHQWRAEEQAILVGANTVIKDN 181

Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN----DDPVLALAF 260
           P LT R   +   +P+RI++  + KLS    I      A  I++  +    D+P      
Sbjct: 182 PSLTTR--HVVGKNPIRIVVSNNKKLSRQLNIFNGD--AQTILLNTDKFKIDEP------ 231

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
               I    CD          L  + +TSL+VEGG      F++  L D   ++     I
Sbjct: 232 ----IGTQICD---------KLFSKKITSLIVEGGPKTLDYFLSENLWDEARIFEGNTDI 278

Query: 321 GEG 323
            EG
Sbjct: 279 KEG 281


>gi|118473539|ref|YP_887383.1| riboflavin biosynthesis protein RibD [Mycobacterium smegmatis str.
           MC2 155]
 gi|118174826|gb|ABK75722.1| riboflavin biosynthesis protein RibD [Mycobacterium smegmatis str.
           MC2 155]
          Length = 335

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 116/345 (33%), Positives = 168/345 (48%), Gaps = 44/345 (12%)

Query: 23  GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G T  NP V  +I+ +DG V G G T   G PHAEV AL  A E A G TA VTLEPC+H
Sbjct: 21  GATYPNPPVGAVILDRDGQVAGVGGTQPTGGPHAEVMALRAAAERAEGGTAVVTLEPCNH 80

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE--GKIFLH 139
           +GR+PPC   ++  GI RVV  V DP+   +G G   ++  GI V   + S+      L 
Sbjct: 81  HGRTPPCVDGLVAAGISRVVYAVADPNPVAAG-GSARMASSGIEVTSGVLSDEVAGGPLR 139

Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199
            +L +Q     H+T K A S D     A   S  IT   ++  VH  RA +DAI+VG GT
Sbjct: 140 EWLHKQRTGLPHVTWKFATSVDGRSAAADGSSQWITSAAARADVHRRRAAADAIVVGTGT 199

Query: 200 VLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
           V  DDP LT RL    L +  P+R+++    ++S D+ ++             NDD    
Sbjct: 200 VFVDDPSLTARLPDGTLADRQPLRVVVG-RREVSSDANVL-------------NDDS--- 242

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
                     +     D  ++L  L  R  T +++EGG  +A +F+ + +V+ I+ Y + 
Sbjct: 243 --------RTMVIRTHDPHEVLRALSDR--TDIMLEGGPTLAGAFLRAGVVNRILAYVAP 292

Query: 318 IVIG-------EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           I++G       + G+PS          F CV+    G DV +  +
Sbjct: 293 ILLGGPITAVDDVGVPSIAHAQRWR--FDCVQ--TIGPDVLMSLV 333


>gi|297627300|ref|YP_003689063.1| riboflavin-specific deaminase
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           (5-amino-6-(5-phosphoribosylamino)uracil reductase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296923065|emb|CBL57649.1| Riboflavin-specific deaminase
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           (5-amino-6-(5-phosphoribosylamino)uracil reductase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 406

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/310 (33%), Positives = 153/310 (49%), Gaps = 40/310 (12%)

Query: 28  NPSVAC-LIVKDGIVIGRGV---TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYG 83
           NP V C L+  DG VI  G            A + A    G + RGATA V+LEPC+H+G
Sbjct: 83  NPRVGCVLLAPDGGVIAEGWHRGAGTAHAEAAALAAARAVGSDVRGATAVVSLEPCAHWG 142

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYL 142
           R+ PCA  + + GI RVV  V DP+   +G G Q L ++G+ ++  + E+ G+  L  +L
Sbjct: 143 RTGPCAVALADAGITRVVFSVPDPNPVAAG-GTQVLRERGVEVIGGVAEASGREALGDWL 201

Query: 143 TRQVEK-------RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195
            RQV         R  + +K+A + D  +  A   S  ITG  +++  H  RA+  AI+V
Sbjct: 202 ARQVAPLPGEVGARPQVLVKMAATLDGRVAAADGTSRWITGPAARDHAHGTRARVGAIVV 261

Query: 196 GIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD 253
           G GT+LADDP LT RL    L +H P+R+++                   PV      DD
Sbjct: 262 GTGTLLADDPALTARLPDGSLADHQPLRVVMGTR----------------PV-----PDD 300

Query: 254 PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
                A R     ++     D  ++L  L  RGV  +L+EGG  +A +F+ + L D +  
Sbjct: 301 ----AAVRGPGGALLALRTHDPAEVLRELSSRGVREVLIEGGPTIASAFLAAGLADELHA 356

Query: 314 YRSQIVIGEG 323
           Y S  ++G G
Sbjct: 357 YISPALLGAG 366


>gi|163788599|ref|ZP_02183044.1| riboflavin biosynthesis protein RibD [Flavobacteriales bacterium
           ALC-1]
 gi|159875836|gb|EDP69895.1| riboflavin biosynthesis protein RibD [Flavobacteriales bacterium
           ALC-1]
          Length = 323

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 155/309 (50%), Gaps = 27/309 (8%)

Query: 22  VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--RGATAYVTLEPC 79
           +G T  NP V  +IV D  +I  G T+  G  HAEV A+    +++    +T YVTLEPC
Sbjct: 8   LGFTRPNPMVGAVIVHDKKIISEGFTSTYGGNHAEVNAINSIKDKSLLEKSTLYVTLEPC 67

Query: 80  SHYGRSPPCAQFIIECGIRRVVV-CVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIF 137
           SH+G++PPC+  I++  I  V++ CVDD +  V+G+G+  L   G  V   ++E+E K  
Sbjct: 68  SHHGKTPPCSDLILKHKIPEVIIGCVDD-NPEVAGKGIAKLKASGCKVTVGVLEAECKTH 126

Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS---VPITGFISKNQVHLLRAQSDAIL 194
              + T   +KR +I LK A ++D  I          V IT   S+  VH  RA+  AIL
Sbjct: 127 HKRFFTFHNKKRPYIILKWAETKDGFIAPETKNEKKPVWITNPYSRQLVHKWRAEEQAIL 186

Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
           VG  TVL D+P LT R       +P R+++D   KL+L+  +      A    +TE    
Sbjct: 187 VGTNTVLEDNPSLTVR--DWDGENPTRVVIDRTSKLNLNFNVFSDE--AKTTRLTE---- 238

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
            L + F K  I +         ++  +L    + S+++EGGA    +FI+  L D   ++
Sbjct: 239 -LNIDFNKP-IAV---------QVANMLYQSNINSIIIEGGAKTLQTFIDEGLWDEARVF 287

Query: 315 RSQIVIGEG 323
              I    G
Sbjct: 288 IGDIDFKNG 296


>gi|298373665|ref|ZP_06983654.1| riboflavin biosynthesis protein RibD [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298274717|gb|EFI16269.1| riboflavin biosynthesis protein RibD [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 349

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/362 (29%), Positives = 168/362 (46%), Gaps = 39/362 (10%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M   +  +R+  G  + NP V  +IV+DG +IG G     G  HAEV A+     +
Sbjct: 4   DEQYMRRCITLARYADGYAAPNPMVGAVIVRDGKIIGEGYHRRYGEAHAEVNAVNSVLNK 63

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
              R +T YV LEPCSHYG++PPC   I+  GI  VVV + D +  V G G++ L + G+
Sbjct: 64  DLLRRSTLYVNLEPCSHYGKTPPCVDLIVRSGIPNVVVGMRDVNPEVCGNGIRKLLEAGV 123

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI----GMAGCGSVPITGFIS 179
            +V+ ++E E +     ++T   +KR +I LK A + D  I           + I+   +
Sbjct: 124 GVVEGVLEDECRFLNRRFITFMQKKRPYIILKWAQTADGFIDELRDTPARKPLKISNPTT 183

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           K   H +R    +I+V   T + D+P LT  + NG    +P+RI++D    + ++  I  
Sbjct: 184 KTLNHCMRTHEMSIMVATRTAILDNPRLTASKWNG---RNPIRILIDRTLSVPIEYNIF- 239

Query: 239 TALLAPVIIVTENDDPVLALAFR------KKNINIIYCDCRD--LKKLLTILVGRGVTSL 290
                        DD    L F         NI  +  D     + ++L  L  R + S+
Sbjct: 240 -------------DDKAKTLVFNSIRNEINDNIEFVKLDFEQNIIPQILNELYVRNIQSV 286

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
           +VEGG  +  SFI   + D      S+ +I   G+P+P        +   V    FG ++
Sbjct: 287 IVEGGRRLLVSFIEYGVWDECHTEVSKQII-RNGVPAP-----SMIDLEPVAEQQFGENI 340

Query: 351 CL 352
           C 
Sbjct: 341 CF 342


>gi|295839977|ref|ZP_06826910.1| riboflavin biosynthesis protein RibD [Streptomyces sp. SPB74]
 gi|295827729|gb|EFG65559.1| riboflavin biosynthesis protein RibD [Streptomyces sp. SPB74]
          Length = 364

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 111/306 (36%), Positives = 159/306 (51%), Gaps = 9/306 (2%)

Query: 22  VGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCS 80
           +G T  NP V C+++   G V G G  +    PHAE+ AL  A E +   TA VTLEPC 
Sbjct: 21  LGRTRHNPVVGCVVLDASGEVAGSGWHSGAAVPHAEIHALARAEELSGVDTALVTLEPCD 80

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLH 139
           H GR+ PC++ +IE G+RRVV  V DP  + +G G   L   G+ V+  ++E+E      
Sbjct: 81  HTGRTGPCSRALIEAGVRRVVYAVADPTDQATG-GAGTLRAAGLDVEHGLLEAEAADVNA 139

Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199
           A+LT     R H+T K A S D     A   S  IT   ++  VH LRA  DA+LVG GT
Sbjct: 140 AWLTSARLGRPHVTWKYAASLDGRTAAADGTSRWITSPEARADVHRLRATCDAVLVGSGT 199

Query: 200 VLADDPELTCR-LNGLQEHSPMRIILDPH-FKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
             ADDP L  R + G  +  P+R++LD     +   ++++  A  AP +I   +D P  A
Sbjct: 200 ARADDPHLAVRGVPGAPQ--PLRVVLDTEGTAVRAGARVLDDA--APTLIALADDAPAPA 255

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
                  +        DL  LL  L  R V  +L+EGGA +A SF+ +   D ++ Y + 
Sbjct: 256 HGAELLRLPRAAHGGLDLTALLAALYARDVRGVLLEGGARLAGSFVAAGCADRVVGYLAP 315

Query: 318 IVIGEG 323
           +++G G
Sbjct: 316 VLLGAG 321


>gi|300775167|ref|ZP_07085029.1| riboflavin biosynthesis protein RibD [Chryseobacterium gleum ATCC
           35910]
 gi|300505907|gb|EFK37043.1| riboflavin biosynthesis protein RibD [Chryseobacterium gleum ATCC
           35910]
          Length = 341

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 107/359 (29%), Positives = 169/359 (47%), Gaps = 29/359 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  ++   +  ++  +G T  NP V  +IV +G +IG G     G  HAE+ A+     +
Sbjct: 4   DELYIKRCIELAQKALGKTYPNPLVGSVIVHNGEIIGEGYHHKAGENHAEINAINSVKNK 63

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                +T YV+LEPC+HYG++PPCA  I E G ++VV+   D   +V+G+G + + + GI
Sbjct: 64  DLIPESTIYVSLEPCAHYGKTPPCALKIRELGFKKVVIGAMDSHDKVNGKGKKIIQEAGI 123

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
             V  ++E E       + T   +KR +I LK A S D  +         ++  +    V
Sbjct: 124 EAVSGILEKECIELNKRFFTYHEKKRPYIILKWAESGDGFLD-KDFKPTAVSNTLVNQFV 182

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII----KT 239
           H LRA   AILVG  T L D+P LT R    +  +P+RI++D   K+     I     KT
Sbjct: 183 HQLRADEHAILVGTQTALNDNPSLTVR--NAEGVNPVRILIDFDLKVPAHFNIYNNDAKT 240

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTSLLVEGGAAV 298
            +L  V    EN            +I  I  +  D L +L+  L    + S+++EGG   
Sbjct: 241 LVLNSVKEGIEN------------HIQFIKINKDDFLPELMKALYKEQIQSIIIEGGRFT 288

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
              FI++ L D  I+ +++ +  E G  +P      E N+   R + F  +    Y  K
Sbjct: 289 LQQFIDANLWDEAIVIKNENLKLENGTKAP------EFNYTADRLENFRDNTVSFYRQK 341


>gi|307564973|ref|ZP_07627490.1| riboflavin biosynthesis protein RibD [Prevotella amnii CRIS 21A-A]
 gi|307346286|gb|EFN91606.1| riboflavin biosynthesis protein RibD [Prevotella amnii CRIS 21A-A]
          Length = 313

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 110/354 (31%), Positives = 167/354 (47%), Gaps = 54/354 (15%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQA 59
           M +   D  +M   L+ ++  + L   NP V  +IV D G +IG G     G  HAEV A
Sbjct: 1   MELKEIDEMYMRRCLQLAKNGMLLAKPNPMVGAVIVSDNGRIIGEGYHICYGKEHAEVNA 60

Query: 60  LEEAGEEAR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
                ++       +T YV LEPCSH+G++PPCA  II+ G+ RVV    DP   VSGRG
Sbjct: 61  FASVRKKDEHLLSKSTIYVNLEPCSHFGKTPPCADLIIKKGVGRVVCGCIDPFSVVSGRG 120

Query: 116 LQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           +Q + + GI V   ++E E       ++T   +KR +I LK A + +  IG+ G   + I
Sbjct: 121 VQRIREAGIPVSVGVLERECLALNKRFITFNTKKRPYIILKWAQTANGFIGIKG-DVLKI 179

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           +   +K  VH LRA++DAI+VG  T + + P+L  R       SP++++L         S
Sbjct: 180 STSFTKMLVHKLRAENDAIIVGRNTEMLEHPQLNVR--KWWGKSPLKVVL---------S 228

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
             +  A+                                D+  LL  L  R   S+++EG
Sbjct: 229 STLPEAI-------------------------------HDIPTLLNELHRRMCQSVIIEG 257

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
           GA    +FI + L D I +  S + I E GI +P     L  +   V+++YF +
Sbjct: 258 GAMTLENFIKNDLYDEIRVEESSLTIKE-GIKAP----QLPTDIRVVKKEYFDN 306


>gi|182415465|ref|YP_001820531.1| riboflavin biosynthesis protein RibD [Opitutus terrae PB90-1]
 gi|177842679|gb|ACB76931.1| riboflavin biosynthesis protein RibD [Opitutus terrae PB90-1]
          Length = 389

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 107/330 (32%), Positives = 159/330 (48%), Gaps = 24/330 (7%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR- 68
           FM  AL  +R   G T  NP V  LIV++G V+  G  A  G PHAE  AL   G+  R 
Sbjct: 12  FMRRALEVARKGWGDTHPNPMVGALIVEEGRVVAEGFHAQDGGPHAERLALLNRGKPPRA 71

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GAT YVTLEPCS  GR+  C   II  GI++VVV   DP+   SG+G + L   G+ ++ 
Sbjct: 72  GATMYVTLEPCSTSGRTGACTDAIISSGIKQVVVGATDPNPEHSGKGFEVLRAAGVEVIH 131

Query: 128 RMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            ++E E      IF H ++ R       I  K AV+ D  +      S  ITG  ++  V
Sbjct: 132 GVLERECTDLNLIFNH-WIHRATPL---IASKSAVTLDGRMACRTGESKWITGEPARANV 187

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK---TA 240
           H+ R    AI VG GTV  D+P LT R+ G  E  P+R + D   +  +D ++ K     
Sbjct: 188 HVWRRLFPAIAVGAGTVFKDNPRLTARVEGQPEWCPIRFVFDGLLRTVVDKQLPKLYTDE 247

Query: 241 LLAPVIIVTENDDPVLALAFRKK------NINIIYCDCR--DLKKLLTILVGRGVTSLLV 292
             +  ++VT    P   L + +K       + +I    +   + +     V   V  +L 
Sbjct: 248 FHSRTVVVT---TPHGGLGYVRKLREMGVQVWVIPSPTQRVPMSEFRKKCVEERVAGVLF 304

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
           EGGA +    +  + +D + +YR+ ++  +
Sbjct: 305 EGGAQLVSHLLQEKQLDYLFIYRAPVLFAD 334


>gi|116617932|ref|YP_818303.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|116096779|gb|ABJ61930.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 344

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 150/307 (48%), Gaps = 21/307 (6%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR--GATAYVTLEPCSHY 82
           T  NP V  +IVKDG VI  G     G  HAE+ A      +    GAT YVTLEPCS  
Sbjct: 22  TFENPRVGAVIVKDGQVITTGYHEKFGEAHAEINAFNRVKNKTEFLGATLYVTLEPCSTQ 81

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGK----IFL 138
           G+   CA  I   G++RVVV   DP+   +G+G++ L   GI VD +   E K     F 
Sbjct: 82  GKVGSCAVQIQNWGLKRVVVGSIDPNPSTNGKGIKMLRSAGITVDVLNTVENKEINPAFH 141

Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIG 198
           + Y TR      ++ LK+A+SQ+  +         +T  ++   VH  RA   AI++G  
Sbjct: 142 YFYTTR----LPYVQLKLAMSQNGFVAEKFGKRKKLTDELADTDVHRERATRSAIMIGSE 197

Query: 199 TVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           T++ D P LT R   +    P+R+++D   +L   +       L    I TEN      +
Sbjct: 198 TMITDQPMLTVRHINISHKQPLRVVIDRRGRLQNTNFDFSNNWL----IYTEN------V 247

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
            F K++ + +      LK +L  L  + + S++VEGG ++ HSF+   L   +++Y +  
Sbjct: 248 LFSKQH-SYVKLMSGALKDILIDLAKQNIQSVMVEGGPSLIHSFLKENLWQEMLIYTTDK 306

Query: 319 VIGEGGI 325
           V+ +  +
Sbjct: 307 VLSKDSL 313


>gi|284991537|ref|YP_003410091.1| riboflavin biosynthesis protein RibD [Geodermatophilus obscurus DSM
           43160]
 gi|284064782|gb|ADB75720.1| riboflavin biosynthesis protein RibD [Geodermatophilus obscurus DSM
           43160]
          Length = 358

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 116/330 (35%), Positives = 176/330 (53%), Gaps = 34/330 (10%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSV-ACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           M VS+ +   M+ A       +G TS NP+V A ++  DG  +G G TA  G PHAEV+A
Sbjct: 1   MTVSAAELSAMARARELGAGVLGTTSPNPAVGAVVLAADGTPVGEGATAPPGGPHAEVRA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           LE+AGE A G TA VTLEPC+H GR+ PCA  ++  G+ RVVV V +P  +++G G   L
Sbjct: 61  LEQAGERACGGTAVVTLEPCAHTGRTGPCADALLAAGVARVVVAVPEP-TQLAGGGAARL 119

Query: 120 SQKGIIVD----RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
              G+ V+    +    EG   L A+LT   E R  +  K+A + D  +  A   S  +T
Sbjct: 120 RAAGVEVELGVAQQAAEEGA--LGAWLTGVREGRPFVVWKVAGTLDGRVAAADGSSRWVT 177

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS--PMRIILDPHFKLSLD 233
           G  ++  VH LRA  DA+++G GT LADDP+LT R    ++ +  P+R++LD   +L   
Sbjct: 178 GPDARAAVHRLRATCDAVVIGSGTALADDPQLTVRDADGRDAARQPLRVVLDRRRRLPRT 237

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
           ++++  A  AP ++ T                          ++LL  L  R V  +L+E
Sbjct: 238 ARVLDDA--APTLVSTAASP----------------------RELLGELFARDVRRVLLE 273

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GG  +A +F+   LVD  +++ +  ++G G
Sbjct: 274 GGPTLAAAFLRDGLVDEAVVHLAPKLLGAG 303


>gi|117928481|ref|YP_873032.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Acidothermus cellulolyticus 11B]
 gi|117648944|gb|ABK53046.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Acidothermus cellulolyticus 11B]
          Length = 366

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 114/309 (36%), Positives = 150/309 (48%), Gaps = 39/309 (12%)

Query: 23  GLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G TS NP V C+++   G V+G G     G PHAEV AL  AG  ARG T  VTLEPC H
Sbjct: 30  GSTSPNPIVGCVVLDAAGRVVGEGFHLRAGGPHAEVVALAAAGPAARGGTLVVTLEPCRH 89

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
            GR+ PC   I   GIRRVV  V DP     G      +    +V  ++ +E      A+
Sbjct: 90  VGRTGPCVAEIRRAGIRRVVYAVADPTAAGGGGAELAAAGLD-VVGGVLAAEAAAANRAW 148

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
           L R    R  +T K A + D  +  A   S  IT   ++  VHLLRAQSDAI++G GT L
Sbjct: 149 LHRVATGRPFVTWKYAATLDGRVAAADGSSRWITSDEARRDVHLLRAQSDAIVIGTGTAL 208

Query: 202 ADDPELTCRLNGLQEH--SPMRII-----LDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
           ADDP LT R++        P+R++     L P  +L                     DD 
Sbjct: 209 ADDPALTVRVDDAAPDLTQPLRVVVGRRDLPPGARL--------------------RDDT 248

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
              +  RK           D   +L  L  RGV S+L+EGG  +A +F+ +RLVD I+ Y
Sbjct: 249 APTVQLRKH----------DPAAVLARLADRGVLSVLLEGGPTLAAAFLRARLVDRIVAY 298

Query: 315 RSQIVIGEG 323
            + I++G G
Sbjct: 299 VAPILLGSG 307


>gi|260655866|ref|ZP_05861335.1| riboflavin biosynthesis protein RibD [Jonquetella anthropi E3_33
           E1]
 gi|260629482|gb|EEX47676.1| riboflavin biosynthesis protein RibD [Jonquetella anthropi E3_33
           E1]
          Length = 358

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 125/361 (34%), Positives = 182/361 (50%), Gaps = 21/361 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  +    G TS NP V C+IV+DG VI  G     G PHAE  AL  AGE A GA
Sbjct: 1   MRMALSLAARGAGTTSPNPMVGCVIVRDGHVIATGWHRAPGAPHAEAAALAAAGERAEGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           T YV LEPC+H GR+PPCA  ++   + RVV  + DP  +V+G+G+  L + GI VD  +
Sbjct: 61  TVYVNLEPCAHQGRTPPCAPALVSAKVVRVVAGLVDPFPQVAGKGIGILREAGIEVDCPV 120

Query: 131 ESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            +E   +L+  +L+    KR  +TLKIA S D +  +    S  ITG  ++   HLLR++
Sbjct: 121 LAEESAWLNRGFLSAVKRKRPWVTLKIASSLDGITALPDGTSQWITGPTARKLGHLLRSE 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP----V 245
           +DA++VG  T   D P L  R   +   SP  +++         S+    A+L P     
Sbjct: 181 NDAVMVGGTTARRDKPRLDVR--DVDGPSPRPVVV---------SRDFSAAMLLPRSGDA 229

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           +    +  P+      +           DL  +L  L  RGV  LLVEGG  +A S +  
Sbjct: 230 LAYAADGCPIPDKLKGRAATVPTGPGGLDLSAVLADLCRRGVNRLLVEGGGTLASSLLQE 289

Query: 306 RLVDSIILYRSQIVIGEG-GIPSP-LEEGYLEK-NFMCVRRDYFGSDVCLEYIGKNLCLQ 362
            LVD + ++++  V+G+G G+    L E  L + NF+         D+ +E  G + C Q
Sbjct: 290 GLVDQLSVFQAPCVLGKGTGMAQELLTESLLARWNFVRTAERRVDDDLWIE--GVSPCSQ 347

Query: 363 E 363
           +
Sbjct: 348 D 348


>gi|326773583|ref|ZP_08232866.1| riboflavin biosynthesis protein RibD [Actinomyces viscosus C505]
 gi|326636813|gb|EGE37716.1| riboflavin biosynthesis protein RibD [Actinomyces viscosus C505]
          Length = 362

 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 103/322 (31%), Positives = 147/322 (45%), Gaps = 36/322 (11%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE---AGEE 66
           M  ALR +         NP V C+I+  DG V+  G     G  HAEV AL      G  
Sbjct: 12  MQRALRAAASPDTPPGPNPRVGCVILSSDGDVLAEGHHRGAGSAHAEVDALANLAATGAS 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGAT  VTLEPC+H GR+ PC Q +++ G+  V+   DDP  +  G G   L   G+ V
Sbjct: 72  ARGATVLVTLEPCNHQGRTGPCVQALLDAGVAEVIYAQDDPTEQAGG-GAATLEAGGVRV 130

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
            R +   E       +L      R  +T K+A + D  I  A   S  IT   +++  H 
Sbjct: 131 RRGLCAQEAARLNRPWLLAVTRGRPMVTWKLAATLDGRIAAADGTSQWITPVAARHDAHR 190

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEH----SPMRIILDPHFKLSLDSKIIKTAL 241
           LR Q DAI+VG GT LADDP LT R    Q       P+R+             ++ +  
Sbjct: 191 LRRQCDAIMVGTGTALADDPALTVRDEAGQPAPAHLQPLRV-------------VVGSRS 237

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           L P   V  +D             + +     D + +L  L  R +  +L+EGG  +A +
Sbjct: 238 LPPTARVLADD-------------HYLLLPDHDPRAVLAALAEREIRHVLLEGGPTLATA 284

Query: 302 FINSRLVDSIILYRSQIVIGEG 323
           F+ + LVD ++ Y +  ++G G
Sbjct: 285 FLRAGLVDRVVAYTAPALLGAG 306


>gi|318081273|ref|ZP_07988605.1| putative riboflavin/cytosine deaminase [Streptomyces sp. SA3_actF]
          Length = 254

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 84/191 (43%), Positives = 105/191 (54%), Gaps = 3/191 (1%)

Query: 22  VGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCS 80
           +G T  NP V C+++   G V G G     G PHAE+ AL  AGE ARG TA VTLEPC 
Sbjct: 21  LGRTRPNPVVGCVVLDASGEVAGSGWHQRAGGPHAEIHALRAAGERARGGTALVTLEPCD 80

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLH 139
           H GR+ PC++ +IE G+RRVV  V DP  + +G G   L   G+ V+  ++E E      
Sbjct: 81  HTGRTGPCSRALIEAGVRRVVHAVADPTDQATG-GADTLRAAGVDVEHGLLEREAADVNA 139

Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199
           A+LT     R H+T K A S D     A   S  IT   ++  VH LRA  DA+LVG GT
Sbjct: 140 AWLTAARLGRPHVTWKYAASLDGRTAAADGTSRWITSPEARADVHRLRATCDAVLVGSGT 199

Query: 200 VLADDPELTCR 210
              DDP L  R
Sbjct: 200 ARTDDPHLAVR 210


>gi|258647712|ref|ZP_05735181.1| riboflavin biosynthesis protein RibD [Prevotella tannerae ATCC
           51259]
 gi|260852547|gb|EEX72416.1| riboflavin biosynthesis protein RibD [Prevotella tannerae ATCC
           51259]
          Length = 322

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 109/328 (33%), Positives = 150/328 (45%), Gaps = 45/328 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR- 68
           +M   LR +         NP V  +IV    +IG G  A  G  HAEV A+     + R 
Sbjct: 7   YMHRCLRLAENGRLSAPPNPMVGAVIVYKDRIIGEGYHAKCGQAHAEVNAIASVRPDDRP 66

Query: 69  ---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
               +T YV+LEPC+HYGR+PPCA+ I+  GI RVVV  +DP  +V GRG+  L   G+ 
Sbjct: 67  HLQDSTLYVSLEPCAHYGRTPPCARLILNTGIPRVVVGCEDPFDKVEGRGITMLRDGGVQ 126

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM----AGCGSVPITGFISK 180
           V   ++E E +     + T   + R +ITLK A S D  +           V ++   S 
Sbjct: 127 VTVGVLEQECRELNRHFFTFHTKHRPYITLKWASSADGFVDSWREDEAAAPVKLSNAHSL 186

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             VH LRA   AILVG GT+ AD P+L  R       +P R++L                
Sbjct: 187 MDVHRLRAYHQAILVGHGTLKADRPQLNVR--DWVGSNPQRLVLG--------------- 229

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
                  V E++ P    A+             D+  LL  L  +G+ SLLVEGG     
Sbjct: 230 ------HVGEDELPAGFTAY------------ADVATLLQSLTEQGIQSLLVEGGPQTQR 271

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSP 328
           +FI   L D  I   S + +G  G+P+P
Sbjct: 272 AFIERGLWDEAIEELSPLTLGS-GVPAP 298


>gi|167565784|ref|ZP_02358700.1| riboflavin biosynthesis protein RibD [Burkholderia oklahomensis
           EO147]
          Length = 357

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 105/325 (32%), Positives = 153/325 (47%), Gaps = 21/325 (6%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ ALR +   +  T  NP V C+I  D  V+G G     G PHAEV AL EAGE ARGA
Sbjct: 1   MAHALRLAEQGLYTTRPNPRVGCVIAHDEQVLGTGWHRRAGEPHAEVHALREAGERARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
           TAYVTLEPC+HYGR+PPCA  ++  G+ RVV+   DP  +V+GRG   L+  GI+V++ +
Sbjct: 61  TAYVTLEPCAHYGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADAGIVVEQGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           ME+E +     + +R    R     K+ +S D  +       +  T   S++ V   RA+
Sbjct: 121 MEAEARELNIGFFSRIERGRPWTRAKLILSIDGPLDGIDRTVLDATESESRDDVRHWRAR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           S  +L   G      P    R NG    +P  ++    F  +LD+    T  + P + + 
Sbjct: 181 SSVVLAPHGV-----PFPAAR-NGA---APGYVVRSRDFA-ALDASPATTEGV-PTLALH 229

Query: 250 ENDDPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
             D  V A     +          D      L   L  L  +GV  L ++   A+  +  
Sbjct: 230 REDAGVAAGYATARADAPAAGTSADAGADLRLPDALARLAAQGVNELFIDADLALCDALF 289

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSP 328
              L D ++LY   +     G+P P
Sbjct: 290 EGDLADELLLY---VHPSRCGVPVP 311


>gi|149197492|ref|ZP_01874543.1| riboflavin biosynthesis protein RibD [Lentisphaera araneosa
           HTCC2155]
 gi|149139510|gb|EDM27912.1| riboflavin biosynthesis protein RibD [Lentisphaera araneosa
           HTCC2155]
          Length = 342

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 159/327 (48%), Gaps = 45/327 (13%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           ++M  A+  +    G TS NP V  +IVKDG VI  G     G  HAE  A+  A E  R
Sbjct: 4   KWMQRAIDNALKAWGHTSPNPHVGAVIVKDGEVIADGWHKKAGTHHAEKDAITNAKEAGR 63

Query: 69  -----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
                G+T YVTLEPC  YGR+ PC ++I++ GI +VV    D +   +GRG  +L Q G
Sbjct: 64  EDDLYGSTIYVTLEPCCTYGRTEPCTEWIMDAGIAKVVYGCTDSNPEHAGRGFNYLLQAG 123

Query: 124 IIVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + ++  +  E  + ++ +  + + E++ ++ LK+A + D  I      S  ITG  ++++
Sbjct: 124 VEIEGPILEEECLAINRFFFKWIDEQKPYVILKMAQTLDGKIATESGQSQWITGAEARHE 183

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII-----LDPHFKLSLDSKII 237
           V  LR   DAI+VG  T+  D+P L  R      H P R I     LD +FK        
Sbjct: 184 VQKLRQGCDAIMVGSETLRQDNPSLNVREIENPRH-PKRYIWSRSDLDQNFK-------- 234

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEG 294
                                AF ++     YC  +   + +  L+ L G  +TSLL+EG
Sbjct: 235 ---------------------AFTQEG-GATYCRAQSKNEWQYFLSQLGGEEITSLLLEG 272

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321
           G  +A + + +++VD I  + +  ++G
Sbjct: 273 GGFLASAALKAQIVDEIQFFIAPKILG 299


>gi|326520824|dbj|BAJ92775.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 468

 Score =  139 bits (351), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 99/321 (30%), Positives = 165/321 (51%), Gaps = 21/321 (6%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            DA +M   +  +R   G TS NP V C+IV++G V+G G     G PHAEV AL +AG+
Sbjct: 123 MDAHYMRRCVELARTAAGHTSPNPMVGCVIVREGKVVGEGFHPKAGQPHAEVFALRDAGD 182

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            A  ATAYV+LEPC+HYGR+PPC++ +I+  ++ VVV + DP+  V+ +G++ L   GI 
Sbjct: 183 LAENATAYVSLEPCNHYGRTPPCSEALIKAKVKEVVVGMTDPNPIVASKGIEKLRNAGID 242

Query: 126 VDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNM-IGMAGCGSVPITGFISKNQV 183
           V   +E    + L+ AY+ R +  ++  TL+  +S + + I   G G+    G+ S+   
Sbjct: 243 VRVGVEEALCLRLNEAYIHRMLTGKAFATLRATLSMNGIVINQIGSGTDQPGGYYSQ--- 299

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
             L  + D +++      A    ++      Q   P+ II+       LD   +     +
Sbjct: 300 --LAKEYDGVIISSDMAKATALPMSREAGAKQ---PLYIIIAQGQGSKLDIPFLDEESAS 354

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE----GG--AA 297
             I++   D PV         +++   D  +L+ +L +L  RG+ S+LV+    GG  A+
Sbjct: 355 NAIVLA--DSPV---TVEPAGVSVSVLDQMNLESILQLLADRGLCSVLVDFRDAGGVLAS 409

Query: 298 VAHSFINSRLVDSIILYRSQI 318
           +   F   +LV  ++L  S +
Sbjct: 410 LLSKFQEDKLVQKVVLELSPV 430


>gi|3378525|emb|CAA08869.1| riboflavin-specific deaminase [Thermotoga neapolitana]
          Length = 241

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 91/222 (40%), Positives = 130/222 (58%), Gaps = 9/222 (4%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCPHAEVQALEEA---G 64
           RFM  A+  ++  +G  + NP V  ++VK+G +I  G    +   PHAE  A+E A   G
Sbjct: 4   RFMKRAIELAKKGLGRVNPNPPVGAVVVKEGRIISEGFHPLFLVGPHAERVAIESAKRKG 63

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E+  G T  VTLEPC H+G++PPC   IIE GI++VV+ + DP+  VSG G++ L + GI
Sbjct: 64  EDLTGTTLVVTLEPCDHHGKTPPCTDLIIESGIKKVVIGMRDPNP-VSGSGVEKLKKHGI 122

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +V+ ++E E K     ++T   E R  I LK A + D  I  A   S  IT  + +++ 
Sbjct: 123 EVVEGVLEEEVKKLCEFFITYVTENRPFIALKYASTLDGKIADAEGNSKWITQDL-RHKA 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILD 225
           H +R    A+LVG  TVL DDP LTCRL G +  +P R+ILD
Sbjct: 182 HEMRNVYSAVLVGARTVLKDDPRLTCRLKGGR--NPTRVILD 221


>gi|256372450|ref|YP_003110274.1| riboflavin biosynthesis protein RibD [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256009034|gb|ACU54601.1| riboflavin biosynthesis protein RibD [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 350

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/299 (35%), Positives = 149/299 (49%), Gaps = 37/299 (12%)

Query: 28  NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87
           NP V  +I +DG+V+G G TA+ G PHAEV AL  AG  ARGA   VTLEPC+H+GR+PP
Sbjct: 22  NPWVGAVIERDGVVVGVGRTAHPGGPHAEVAALAAAGALARGAQMSVTLEPCAHHGRTPP 81

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI---IVDRMMESEGKIFLHAYLTR 144
           C   IIE G+ RV V + DPD RV GRG+Q L   G+   +  R M +     L  YL+ 
Sbjct: 82  CVDAIIEAGVARVEVGLIDPDPRVRGRGIQALQAAGVEVRLAPRAMRARLADDLAPYLSH 141

Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
           ++  R  +  KIA S D  +      S  IT   ++   H LRA+ DAI+VG GT   D 
Sbjct: 142 RLRGRPFVVGKIACSLDGAVADRWGQSKWITQEAARELGHRLRAEVDAIIVGRGTFERDR 201

Query: 205 PELTCRLNG-LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
           P+LT R  G L    P+R++              +  L  P   V  ++ P   LA    
Sbjct: 202 PQLTARPGGRLARRQPVRVVAS------------RRPLDVPEGFVVASESPGALLAAGAA 249

Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
                                RG   +LVEGG  +  +++   LVD +++  + I++G+
Sbjct: 250 ---------------------RGWVEVLVEGGPTLLGAYLAEGLVDELLVAIAPILLGD 287


>gi|94986602|ref|YP_594535.1| pyrimidine reductase, riboflavin biosynthesis [Lawsonia
           intracellularis PHE/MN1-00]
 gi|94730851|emb|CAJ54213.1| Pyrimidine reductase, riboflavin biosynthesis [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 382

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 163/335 (48%), Gaps = 22/335 (6%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           +  ++  +     RW    T+ NP V  +++++G ++  G  +  G PHAEV  + +A  
Sbjct: 11  YAMKYAISIAEKGRWD---TAPNPVVGSVLIQNGKIVAEGFHSLYGGPHAEVLCINDAKN 67

Query: 66  EA---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           +       T   TLEPC+HYG++PPC + II+  I+ V++   DP    SG G+  L+  
Sbjct: 68  KHINLSDCTLITTLEPCNHYGKTPPCTKAIIDNNIKHVIIGTKDPTTLASG-GVHTLTSA 126

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V+  ++E E +  +  ++T Q   R +I LK+A + D  I  +   S  I+  +S+ 
Sbjct: 127 GITVEVGILEKECQALIADFITWQNTSRPYILLKLATTLDGKIATSTGHSKWISSEVSRQ 186

Query: 182 QVHLLRAQ----SDAILVGIGTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSK 235
           +VH LR        AIL+G  T+  D+P+LTCR N        P+ II+        D  
Sbjct: 187 KVHKLRENVGKVGGAILIGGNTLKLDNPQLTCRNNNNNNKIQQPLAIIITSTLPEQQDIY 246

Query: 236 IIKTALLAPVIIVT-ENDDPVLALAFRKKNINIIYCD--CRDLKKLLT-----ILVGRGV 287
           +  +     +I  T ++     A   RKK + I+       DL  +LT     I   +G 
Sbjct: 247 LFNSRPTETIIYTTPQSGSTQQATTLRKKGVKIVTLKNWSPDLSAILTDITEHIRSTQGC 306

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
             +L EGG  +  S + + LVD + +Y S  ++G+
Sbjct: 307 LYMLCEGGGKLGSSLLKANLVDELHIYLSPKILGD 341


>gi|326426566|gb|EGD72136.1| riboflavin biosynthesis protein RibA [Salpingoeca sp. ATCC 50818]
          Length = 1091

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/318 (31%), Positives = 149/318 (46%), Gaps = 62/318 (19%)

Query: 69   GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
            GATAYVTLEPC H GR+ PC Q +++ G+ R V+ V DPD RVS RGL +L  +G+ +  
Sbjct: 715  GATAYVTLEPCHHQGRTGPCDQALVQAGVARTVIAVTDPDERVSARGLAFLRSRGVEVAT 774

Query: 128  RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
             +  +E +  L  YL ++   R    +K A+S D  +      S  ITG +++ + H +R
Sbjct: 775  GVCGAEAEALLAPYLHQRRTGRPLCVIKTAISIDGRVACKDATSKWITGPLARARAHKMR 834

Query: 188  AQSDAILVGIGTVLADDPELTCRL----------------NGLQEHSP------------ 219
            A+S A+L GIGT LAD+P L  RL                      SP            
Sbjct: 835  AESQAVLCGIGTALADNPTLNVRLALASLPPGERAAFAPAMHAASPSPVTVAGAGAHFGR 894

Query: 220  ----MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL-AFRKKNINIIYCD--- 271
                +R++LD   +L  + +++ T+ +AP I+ T  D    AL  +    +  +  D   
Sbjct: 895  GMPLVRVVLDARGRL-FEGRLLDTS-IAPTIVYTSRDCSAQALKTWAAHGVEAVVVDTAC 952

Query: 272  -------CR----------------DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
                   CR                DL ++L  L  RGV  +LVEGGA V  SF+   L 
Sbjct: 953  ASGYAGACRGVDTRVGGDAAAPVLLDLMQVLRDLAKRGVLQVLVEGGAQVHSSFVQQGLG 1012

Query: 309  DSIILYRSQIVIGEGGIP 326
            D + ++    ++G   +P
Sbjct: 1013 DQLAVFVGPKLLGGTAVP 1030



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 34/60 (56%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D  FM  AL  +R        NP V C++V+DG VIG G     G PHAE++A+ +A
Sbjct: 577 AAVDELFMRRALSLARLGRVSAPPNPWVGCVLVRDGHVIGEGYHRRAGMPHAEIEAMADA 636


>gi|171915861|ref|ZP_02931331.1| riboflavin biosynthesis protein RibD [Verrucomicrobium spinosum DSM
           4136]
          Length = 354

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/359 (30%), Positives = 169/359 (47%), Gaps = 36/359 (10%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D ++M  AL  +R  +GLTS NP+V  ++V +G +IG+G     G PHAEV+AL  A   
Sbjct: 6   DEKWMRLALAEARRGIGLTSPNPAVGAVLVNEGRLIGQGWHHRVGQPHAEVEALRNAEAN 65

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
             G E RGATAYVTLEPCS +GR+  C   + + G+ RVV    DP+   +G   + L +
Sbjct: 66  GHGAEIRGATAYVTLEPCSTHGRTGACTVALAKAGVSRVVYGATDPNPGHAGAADRLLQE 125

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI ++  ++  E +  L  +         ++  K   S D  +      S  IT  +S+
Sbjct: 126 AGIAVLSGVLREECEEVLRPFAKWITTGLPYVVAKAGQSLDGRLTRPPGESQWITSEVSR 185

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIK 238
                LR QSDAIL+G  T+  D+P LT R + + E    P R+++     L   + +  
Sbjct: 186 AHAMQLRVQSDAILIGAETLRRDNPRLTLRGDAVPEGKIQPWRVVVTRGGDLPRGANLF- 244

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
                       ND+      F+++ + +    C    ++L  L  RG+TSLL+E G  +
Sbjct: 245 ------------NDE------FKERTLVLEGERC--FPEILQELAARGITSLLLESGGNL 284

Query: 299 AHSFINSRLVDSIILYRSQIVIGE-----GGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
                 +  VD +  Y +  + G      GG+   L  G         R +  GSDVC+
Sbjct: 285 LGQAFAAGAVDEVCWYIAPRICGGGTMAVGGLDFAL--GAKSVELEKARVEVLGSDVCV 341


>gi|46579612|ref|YP_010420.1| riboflavin biosynthesis protein RibD [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449027|gb|AAS95679.1| riboflavin biosynthesis protein RibD [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311233416|gb|ADP86270.1| riboflavin biosynthesis protein RibD [Desulfovibrio vulgaris RCH1]
          Length = 377

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/332 (32%), Positives = 164/332 (49%), Gaps = 23/332 (6%)

Query: 10  FMSAALRFS---RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           FM  A+  +   RW+    + NP+V  ++V+DG V  RG     G PHAEV+ L +A   
Sbjct: 8   FMREAIALAERGRWYA---APNPTVGAVLVRDGEVAARGWHTGYGKPHAEVECLRDAASK 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G +    T  VTLEPC+H+G++PPC+  I+E GI RVVV + DP+   SG G ++L   G
Sbjct: 65  GVDPAHCTLVVTLEPCNHHGKTPPCSHAIVEAGITRVVVGLADPNPVASG-GAEYLRAHG 123

Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + VD  + E E    +  +LT ++    ++ LK+A + D  I      S  I+G  ++  
Sbjct: 124 VTVDMGVCEQECHDLVADFLTWKLTDLPYVILKLASTLDGRIATRSGHSQWISGAEARAA 183

Query: 183 VHLLRAQ----SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           VH LRA+      A+LVG  T+  DDP+LT R+  L    PM ++   H         I 
Sbjct: 184 VHELRARIGEAGGAVLVGGTTLYTDDPQLTARVAPLPRRQPMAVVATRHVPHHDALPRIF 243

Query: 239 TALLAPVIIVTENDDP--VLALAFRKKNINIIYCDCR-----DLKKLLTIL-VGRGVTSL 290
                  ++ T++       A A R   + I+          DL+  LT L    GV  +
Sbjct: 244 RERPGQCVVWTDSTGAGTEAADALRTSGVCIMALPLTPSGRLDLRAGLTRLRADHGVEHV 303

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
           L EGG  +A S + + LV    L+ +  +IG+
Sbjct: 304 LCEGGGKLALSLLEAGLVGEFHLHMAPKIIGD 335


>gi|242347654|gb|ACS92631.1| conserved hypothetical protein [Triticum aestivum]
          Length = 396

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/338 (32%), Positives = 170/338 (50%), Gaps = 28/338 (8%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            DA +M   +  +R   G TS NP V C+IV++G V+G G     G PHAEV AL +AG+
Sbjct: 51  MDAHYMRRCVDLARTAAGHTSPNPMVGCVIVREGEVVGEGFHPKAGQPHAEVFALRDAGD 110

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            A  ATAYV+LEPC+HYGR+PPC + +I+  I+ VVV + DP+  V+ +G++ L   GI 
Sbjct: 111 LAENATAYVSLEPCNHYGRTPPCTEALIKAKIKEVVVGMTDPNPIVASKGIEKLRNAGID 170

Query: 126 VDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNM-IGMAGCGSVPITGFISKNQV 183
           V   +E    + L+ AY+ R +  ++  TL+  +S + + I   G G+    G+ S+   
Sbjct: 171 VRVGVEEALCLRLNEAYIHRMLTGKAFATLRTTLSMNGIVINQIGSGADQPGGYYSQ--- 227

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE---HSPMRIILDPHFKLSLDSKIIKTA 240
             L  + D      G V++ D      L   QE     P+ II+       L    +   
Sbjct: 228 --LAKEYD------GVVISSDMAKATTLPISQEAGAKQPLYIIIAQGEGSKLHIPFLDEE 279

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE----GG- 295
             +  I++   D PV   A     +++   D  +L  +L IL  RG+ S+LV+    GG 
Sbjct: 280 SASNAIVLA--DSPV---AVEPSGVSVSVLDEMNLDSILRILADRGLCSVLVDFRDAGGA 334

Query: 296 -AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
            A++   F   +LV  +++  S + +   G PS L  G
Sbjct: 335 LASLLKDFQEDKLVQKVLVELSPVWMVSPG-PSDLAFG 371


>gi|296537269|ref|ZP_06899158.1| riboflavin biosynthesis protein RibD [Roseomonas cervicalis ATCC
           49957]
 gi|296262404|gb|EFH09140.1| riboflavin biosynthesis protein RibD [Roseomonas cervicalis ATCC
           49957]
          Length = 225

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/226 (42%), Positives = 126/226 (55%), Gaps = 3/226 (1%)

Query: 45  GVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
           G TA GG PHAE +AL+ AG  ARGATAYVTLEPC H+GR+PPC   +I  G+ RVVV +
Sbjct: 1   GWTAPGGRPHAETEALKRAGAAARGATAYVTLEPCCHWGRTPPCTDALIAAGVARVVVAM 60

Query: 105 DDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163
            DPD RV G G++ L   GI V   ++E E +     +  R       +TLK+A + D  
Sbjct: 61  RDPDPRVDGGGIEQLRAAGIAVSTGLLEDEARAINAGFTKRLTRNLPLLTLKLASTLDGR 120

Query: 164 IGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII 223
           I      S  ITG  ++   H LR   DA+LVG GT LADDPEL+CR+ G      +R++
Sbjct: 121 IATRSGESQWITGAPARRLAHALRGTHDAVLVGSGTALADDPELSCRIPGFAPVPTVRVV 180

Query: 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA-FRKKNINII 268
            D   +LS  +++++     PV I T    P   LA  R     I+
Sbjct: 181 ADARLRLSPGARMLREG-GGPVWIATRPGHPDALLAPLRAAGAEIV 225


>gi|58698891|ref|ZP_00373757.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58534587|gb|EAL58720.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 167

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 69/153 (45%), Positives = 95/153 (62%), Gaps = 1/153 (0%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FMS ALR +  ++G  + NP+V C+IVKDG ++  G T  GG PHAEV AL+ A + 
Sbjct: 3   DDHFMSIALRLAEKNLGNVAPNPAVGCVIVKDGTIVSEGYTGIGGRPHAEVVALQNAKDS 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GAT Y+TLEPC H+G + PC   II+  I+RVV+   DPD RVSGRG++ L + GI V
Sbjct: 63  THGATIYITLEPCCHHGVTGPCTAKIIKASIKRVVIATIDPDSRVSGRGMKALKEAGIEV 122

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAV 158
           ++ +M+ E K     + T +   R  I  K+A 
Sbjct: 123 EQGIMQKEAKELNVGFFTTKELHRPFIACKVAT 155


>gi|317124749|ref|YP_004098861.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Intrasporangium calvum DSM 43043]
 gi|315588837|gb|ADU48134.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Intrasporangium calvum DSM 43043]
          Length = 378

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 109/324 (33%), Positives = 155/324 (47%), Gaps = 7/324 (2%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQAL 60
           P S  DA  M  A+  +         NP V C+IV + G V+  G     G PHAE  AL
Sbjct: 8   PQSPVDAARMLRAIALAE-RSPWPDPNPRVGCVIVDRAGEVVAEGWHRGAGTPHAEAAAL 66

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE ARG TAYV+LEPC+H GR+ PC+  ++E G+ RVV    DP+   SG G   L 
Sbjct: 67  ALAGERARGGTAYVSLEPCAHRGRTGPCSDALVEAGVARVVYAQADPNAEASG-GADVLR 125

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             G+ IV  ++  E       ++      R  +T K A + D     A   S  ITG  +
Sbjct: 126 AAGVQIVGGLLADEAAALNDRWVRTITLGRPLVTWKFAATLDGRSAAADGSSQWITGPAA 185

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  VH LRA  DAI+ G GTVLADDP LT R + +   +  R   +     +     + +
Sbjct: 186 RADVHALRATRDAIVAGTGTVLADDPRLTVRPDTVVAPTDRRTGPEVAPGAAAAPGPVGS 245

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
             L   ++V     P  A         +++   RD+  +L  L  RGV  + +EGG  +A
Sbjct: 246 QPLR--VVVGLRAVPPSARVHAGPG-EVLHLRTRDVHAVLAALWSRGVREVWLEGGPTLA 302

Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323
            +F  + LVD +  Y +  ++G G
Sbjct: 303 AAFWAADLVDDVYAYLAPALLGAG 326


>gi|308177749|ref|YP_003917155.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Arthrobacter arilaitensis Re117]
 gi|307745212|emb|CBT76184.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Arthrobacter arilaitensis Re117]
          Length = 346

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/309 (34%), Positives = 148/309 (47%), Gaps = 36/309 (11%)

Query: 23  GLTSTNPSV-ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE----EARGATAYVTLE 77
           G    NP V AC++  +G +I  G     G PHAEV AL   G+    +AR  T  VTLE
Sbjct: 21  GYRGANPLVGACVLDAEGNIIATGFHLGAGHPHAEVDALRRLGKMSPAKARELTMVVTLE 80

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
           PC+H GR+ PCA+ I E GI +V   V  PD   +  G  +L  +GI   ++  S+    
Sbjct: 81  PCNHTGRTGPCARAIAEAGIGQVHYAV--PDNTAASGGADYLRSQGIQATQLECSDAARN 138

Query: 138 LHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
           L+  +   + E R  IT+KIA S D  I      S  IT   S+N  H LR++ DAI+VG
Sbjct: 139 LNQRWFIAKAEGRPFITVKIAQSLDGRINAPDGTSKWITSEASRNHAHGLRSRVDAIMVG 198

Query: 197 IGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
             T + DDP LT R     L E  P R+++    +L  D            + + + DD 
Sbjct: 199 TNTAVIDDPRLTARTPTGELHERQPFRLVMGER-ELPND------------LALMQGDDW 245

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
              L              RD+ + +      G   LLVEGGA VA +FI + L D I  Y
Sbjct: 246 EQIL-------------TRDVHEAIVRANELGFGHLLVEGGATVASAFIAADLADEIYCY 292

Query: 315 RSQIVIGEG 323
           ++ ++IG G
Sbjct: 293 QAPLMIGAG 301


>gi|167572878|ref|ZP_02365752.1| riboflavin biosynthesis protein RibD [Burkholderia oklahomensis
           C6786]
          Length = 357

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/311 (32%), Positives = 147/311 (47%), Gaps = 18/311 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ ALR +   +  T  NP V C+I     V+G G     G PHAEV AL EAGE ARGA
Sbjct: 1   MAHALRLAEQGLYTTRPNPRVGCVIAHGEQVLGTGWHRRAGEPHAEVHALREAGERARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
           TAYVTLEPC+HYGR+PPCA  ++  G+ RVV+   DP  +V+GRG   L+  GI+V++ +
Sbjct: 61  TAYVTLEPCAHYGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADAGIVVEQGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           ME+E +     + +R    R     K+ +S D  +       +  T   S++ V   RA+
Sbjct: 121 MEAEARELNIGFFSRIERGRPWTRAKLILSIDGPLDGIDRTVLDATESESRDDVRHWRAR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           S  +L   G      P    R NG    +P  ++    F  +LD+    T  + P + + 
Sbjct: 181 SSVVLAPHGV-----PFPAAR-NGA---APGYVVRSRDFA-ALDASPATTEGV-PTLALH 229

Query: 250 ENDDPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
             D  V A     +          D      L   L  L  +GV  L ++   A+  +  
Sbjct: 230 REDAGVAAGYATARADAPAAGTSADAGADLRLPDALARLAAQGVNELFIDADLALCDALF 289

Query: 304 NSRLVDSIILY 314
              L D ++LY
Sbjct: 290 EGNLADELLLY 300


>gi|317504450|ref|ZP_07962429.1| riboflavin biosynthesis protein RibD [Prevotella salivae DSM 15606]
 gi|315664438|gb|EFV04126.1| riboflavin biosynthesis protein RibD [Prevotella salivae DSM 15606]
          Length = 318

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 104/316 (32%), Positives = 149/316 (47%), Gaps = 42/316 (13%)

Query: 28  NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR----GATAYVTLEPCSHYG 83
           NP V  +IV    +IG G     G  HAEV A      E       AT YV+LEPCSHYG
Sbjct: 24  NPMVGAVIVARNRIIGEGYHVRFGEEHAEVNAFASVKPEDEMLLNEATIYVSLEPCSHYG 83

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYL 142
           ++PPCA  II  GI+R V    DP  +V GRG+Q +   GI ++  +ME E     H ++
Sbjct: 84  KTPPCADLIISKGIKRCVCGCVDPFAKVQGRGIQRMRDAGIEVIVGVMEKECLALNHRFI 143

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
           T   + R +I LK A + +  I   G G + ++   ++  VH LRA++DAILVG  T L+
Sbjct: 144 TFNAKHRPYILLKWAQTLNGFISRKG-GPLQLSTPKTQMLVHQLRAENDAILVGHTTFLS 202

Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
           D P L  R    Q  +P RI+L P                              A   R 
Sbjct: 203 DHPRLDVRQWSGQ--NPERIVLSPTMS---------------------------AQNARP 233

Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
            N  +       + K++  L      SL+VEGG     +FI+  L D I +  + ++I +
Sbjct: 234 SNWTV----AATIDKVIAHLYATKKQSLVVEGGRMTLQAFIDRGLWDEIRIETAPVLITD 289

Query: 323 GGIPSPL--EEGYLEK 336
            G+P+P    + ++EK
Sbjct: 290 -GVPAPHIPSDAHIEK 304


>gi|83859882|ref|ZP_00953402.1| riboflavin biosynthesis protein RibD [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852241|gb|EAP90095.1| riboflavin biosynthesis protein RibD [Oceanicaulis alexandrii
           HTCC2633]
          Length = 195

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 68/139 (48%), Positives = 89/139 (64%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           PV++ D R+M  AL  +   +G T+ NPSV C+IV+DG +IG   TA GG PHAE QALE
Sbjct: 5   PVTAEDLRYMDTALALAYARLGQTAPNPSVGCIIVRDGRIIGAAATAPGGRPHAEPQALE 64

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +AG  A GAT YVTLEPC+HYG++PPCA+ +I      VV+   DP   V+GRG+  L+ 
Sbjct: 65  QAGARAEGATVYVTLEPCAHYGKTPPCAEALIAAHPAEVVIACRDPFEHVAGRGMTMLAD 124

Query: 122 KGIIVDRMMESEGKIFLHA 140
            GI V   +     I L+A
Sbjct: 125 AGIAVLEGVREADAIALNA 143


>gi|300934515|ref|ZP_07149771.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Corynebacterium resistens DSM 45100]
          Length = 320

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 113/342 (33%), Positives = 161/342 (47%), Gaps = 56/342 (16%)

Query: 34  LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFII 93
           ++  DG V GRG T   G  HAE+ AL+EAG  ARG  A VTLEPC+H GR+ PC Q ++
Sbjct: 2   ILDSDGEVAGRGATEPAGGRHAEIVALDEAGTRARGGRAIVTLEPCNHTGRTGPCTQALL 61

Query: 94  ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH-------------- 139
             GI RV     DP    SG G   L+  G+      E  G    H              
Sbjct: 62  AAGIVRVDYLFADPFELASG-GANSLASAGV------EVHGPYLPHPSQAAPWTPVQGVE 114

Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199
           A+L     KR ++ LK+A + D  +  +   S  ITG  ++   H  RAQ DAILVG GT
Sbjct: 115 AWLRGVKNKRPYVILKLAATMDGRVAASDGSSQWITGAAARGHAHARRAQVDAILVGTGT 174

Query: 200 VLADDPELTCRLNGLQ----EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
           V ADDP+LT R +  Q    E  P+R+++  +  +  D+ ++                  
Sbjct: 175 VEADDPKLTARDDSGQPLPKELQPLRVVMG-NRSIPEDAAVM------------------ 215

Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
                 ++          D+ ++L  L  RGV ++LVEGG +VA +F+N+ +VD I  Y 
Sbjct: 216 ------QQPGETFLARSHDVHQVLAQLHSRGVVTVLVEGGPSVAAAFMNAGVVDEINYYC 269

Query: 316 SQIVIGEGGIP---SPLEEGYLEKNFMCVRR---DYFGSDVC 351
           +  V+G G      S LE G   ++    R       G+D+C
Sbjct: 270 APAVLGAGFNAMDGSTLEMGRTIQDLQRFRPREIQILGNDIC 311


>gi|304570589|ref|YP_388926.2| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 373

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 108/355 (30%), Positives = 175/355 (49%), Gaps = 34/355 (9%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQAL 60
           P SSF    ++ A +  RW    TS NP V  ++VKDG  + RG  TAYG  PHAE++ L
Sbjct: 6   PFSSFMLEAVALAEK-GRW---ATSPNPCVGAVLVKDGQTVARGWHTAYGK-PHAEIECL 60

Query: 61  EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            +A   G      T  VTLEPC+H G++PPC+  +++ GIR VVV + DP+    G G  
Sbjct: 61  RDAARRGVNPAECTLVVTLEPCNHTGKTPPCSIAVLQAGIRHVVVGMMDPNPVAQG-GAN 119

Query: 118 WLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
           +L + G+ V+  +   E +  +  ++T +     +  +K+A + D  I      S  I+G
Sbjct: 120 FLRENGVTVETGVCRQECEDVVDDFITWKKTPLPYTIIKLASTLDGRIATRTGHSRWISG 179

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS----- 231
             S+ +VH LR  +DA++VG GT  AD+P+LTCRL G++   P+ +++      +     
Sbjct: 180 EESRRRVHELRRHADAVIVGGGTFRADNPQLTCRLEGIRRQ-PLAVVVTSQLPDAGAPMH 238

Query: 232 -LDSKIIKTALLAP-VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG----R 285
            L  +  +T    P  +  +E  D + AL  R   ++    +C+    L T L G     
Sbjct: 239 LLQQRPHETIFWTPRAVAASEKADALRALGVRVTGLDR---NCKGRLDLHTALAGLRSEY 295

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG--------EGGIPSPLEEG 332
                L EGG  +A S +   +   + L+ +  ++         +G  PS +E+ 
Sbjct: 296 DCYHTLCEGGGMLALSMLEMNVAQELELHMAPKLLADAQARPLFDGRTPSTMEQA 350


>gi|91216505|ref|ZP_01253471.1| riboflavin biosynthesis protein ribD [Psychroflexus torquis ATCC
           700755]
 gi|91185299|gb|EAS71676.1| riboflavin biosynthesis protein ribD [Psychroflexus torquis ATCC
           700755]
          Length = 347

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 103/336 (30%), Positives = 169/336 (50%), Gaps = 23/336 (6%)

Query: 22  VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--RGATAYVTLEPC 79
           +G T  NP V C+IV +  +IG G     G  HAEV+A+    +++  + +  YVTLEPC
Sbjct: 19  LGTTYPNPLVGCVIVYNDRIIGEGWHIKAGDDHAEVRAINSVKDQSLLKKSILYVTLEPC 78

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-QWLSQKGIIVDRMMESEGKIFL 138
           SHYG++PPC+  IIE  I ++V+   DP  +V+G G+ + L+ K  +   + E   +   
Sbjct: 79  SHYGKTPPCSDLIIEKKIPKIVIGTLDPFAKVAGMGIKKLLAAKRSVTVGVCEEACEELN 138

Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS---VPITGFISKNQVHLLRAQSDAILV 195
             + T   ++R  + LK A +    I            IT   S+  VH  R++  AILV
Sbjct: 139 KRFFTFHRKQRPFVILKWAETTHGFIAPTEQQKGDIFWITNAYSQQLVHKWRSEEQAILV 198

Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
           G  T L D+P+L  R    +  +P R+++D   KL     ++ T+   P II     D  
Sbjct: 199 GTQTALKDNPKLNVR--HYEGKNPTRVVIDRALKLPSSLALVDTS--QPTIIF---HDHK 251

Query: 256 LALAFRKKNINIIYCDC-RDL-KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
           L  A  + N++    D  R+L +++L+ L  +G+ S+++EGGA    SFI+  L D    
Sbjct: 252 LTKA-SQYNLSFEALDFERNLPEQILSSLYEKGLQSVIIEGGAMTIQSFIDHELWDE--- 307

Query: 314 YRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
             +++ IG+  I   L+   L++     R ++   D
Sbjct: 308 --ARVFIGKNEIKDGLKGPVLKQK--ATRNEWLEGD 339


>gi|31792603|ref|NP_855096.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Mycobacterium bovis AF2122/97]
 gi|121637339|ref|YP_977562.1| putative bifunctional riboflavin biosynthesis protein RIBG:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|215426746|ref|ZP_03424665.1| putative bifunctional riboflavin biosynthesis protein RIBG:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           [Mycobacterium tuberculosis T92]
 gi|224989814|ref|YP_002644501.1| putative riboflavin biosynthesis protein [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|260186348|ref|ZP_05763822.1| putative riboflavin biosynthesis protein [Mycobacterium
           tuberculosis CPHL_A]
 gi|260200464|ref|ZP_05767955.1| putative riboflavin biosynthesis protein [Mycobacterium
           tuberculosis T46]
 gi|289442854|ref|ZP_06432598.1| riboflavin biosynthesis protein RibD [Mycobacterium tuberculosis
           T46]
 gi|289447005|ref|ZP_06436749.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           CPHL_A]
 gi|289749967|ref|ZP_06509345.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           T92]
 gi|31618192|emb|CAD94305.1| PROBABLE BIFUNCTIONAL riboflavin biosynthesis protein RIBG :
           Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (Riboflavin-specific deaminase) +
           5-amino-6-(5-phosphoribosylamino) uracil reductase (HTP
           reductase) [Mycobacterium bovis AF2122/97]
 gi|121492986|emb|CAL71457.1| Probable bifunctional riboflavin biosynthesis protein RIBG :
           Diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224772927|dbj|BAH25733.1| putative riboflavin biosynthesis protein [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|289415773|gb|EFD13013.1| riboflavin biosynthesis protein RibD [Mycobacterium tuberculosis
           T46]
 gi|289419963|gb|EFD17164.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           CPHL_A]
 gi|289690554|gb|EFD57983.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           T92]
          Length = 339

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 108/324 (33%), Positives = 153/324 (47%), Gaps = 34/324 (10%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
           V S D   M  A+  S    G T  NP V  +IV  +G ++G G T   G  HAEV AL 
Sbjct: 6   VKSID-EAMGLAIEHSYQVKGTTYPNPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALR 64

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG  A GA   VT+EPC+HYG++PPC   +IE  +  VV  V DP+  ++G G   LS 
Sbjct: 65  RAGGLATGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADPN-GIAGGGAGRLSA 123

Query: 122 KGIIVDR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
            G+ V    + E      L  +L +Q     H+T K A S D     A   S  I+   +
Sbjct: 124 AGLQVRSGVLAEQVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAA 183

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKII 237
           +  +H  RA +DAILVG GTVLADDP LT RL    L    P+R                
Sbjct: 184 RLDLHRRRAIADAILVGTGTVLADDPALTARLADGSLAPQQPLR---------------- 227

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                   ++V + D P  A     +    +     +  ++L  L  R  T +L+EGG  
Sbjct: 228 --------VVVGKRDIPPEARVLNDE-ARTMMIRTHEPMEVLRALSDR--TDVLLEGGPT 276

Query: 298 VAHSFINSRLVDSIILYRSQIVIG 321
           +A +F+ +  ++ I+ Y + I++G
Sbjct: 277 LAGAFLRAGAINRILAYVAPILLG 300


>gi|260204674|ref|ZP_05772165.1| putative riboflavin biosynthesis protein [Mycobacterium
           tuberculosis K85]
 gi|289574078|ref|ZP_06454305.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           K85]
 gi|289538509|gb|EFD43087.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           K85]
          Length = 339

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 107/324 (33%), Positives = 156/324 (48%), Gaps = 34/324 (10%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
           V S D   M  A+  S    G T  NP V  +IV  +G ++G G T   G  HAEV AL 
Sbjct: 6   VKSID-EAMGLAIEHSYQVKGTTYPNPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALR 64

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG  A GA   VT+EPC+HYG++PPC   +IE  +  VV  V DP+  ++G G   LS 
Sbjct: 65  RAGGLATGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADPN-GIAGGGAGRLSA 123

Query: 122 KGIIVDR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
            G+ V    + E      L  +L +Q     H+T K A S D     A   S  I+   +
Sbjct: 124 AGLQVRSGVLAEQVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAA 183

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKII 237
           +  +H  RA +DAILVG GTVLADDP LT RL    L    P+R+++     L  +++++
Sbjct: 184 RLDLHRRRAIADAILVGTGTVLADDPALTARLADGSLAPQQPLRVVVGKRDILP-EARVL 242

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                  +I   E  + + AL+ R                          T +L+EGG  
Sbjct: 243 NDEARTMMIRTHEPMEVLRALSDR--------------------------TDVLLEGGPT 276

Query: 298 VAHSFINSRLVDSIILYRSQIVIG 321
           +A +F+ +  ++ I+ Y + I++G
Sbjct: 277 LAGAFLRAGAINRILAYVAPILLG 300


>gi|108804202|ref|YP_644139.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Rubrobacter xylanophilus DSM 9941]
 gi|108765445|gb|ABG04327.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Rubrobacter xylanophilus DSM 9941]
          Length = 369

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 110/295 (37%), Positives = 157/295 (53%), Gaps = 30/295 (10%)

Query: 51  GCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRS--PPCAQFIIECGIRRVVVCVDDPD 108
           G  HAE  AL  AG  ARGAT YVTLEPC+H+ R+  PPCA+ ++  GIRR+VV   DP+
Sbjct: 41  GEEHAEAMALRRAGAAARGATMYVTLEPCNHHLRTPGPPCAEAVLRAGIRRLVVGHADPN 100

Query: 109 VRVSGRGLQWLSQKGIIV----DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164
            RV+GR L+ L + G+ V    D + E + + F  A        R  + LK+AV+ D  I
Sbjct: 101 PRVNGRSLRRLREAGVEVEVLDDPVFERQNERFFWAMR----RGRPFVHLKLAVTLDGRI 156

Query: 165 GMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP--MRI 222
             AG  S  +TG  ++ + H LRA++ A+LVG GT  ADDP LT R  GL E  P  +R 
Sbjct: 157 AAAGGDSRWVTGPEARRRAHALRAEAGAVLVGAGTARADDPLLTPR--GLDEEPPRVLRA 214

Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIV-TENDDPVLALAFRKKNINIIYCDCR-------- 273
           +LDP   L   S+++ TA   P+++   E   P      R++ +     +          
Sbjct: 215 VLDPRLTLPEASRLVSTAPEWPLVVFCAEGASP-----RRRRRLEAAGAEVEAVPAAGDG 269

Query: 274 --DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
             DL  +L  L  RG + +LVEGG   A  F+   LV+ + L+ +  + G  G+P
Sbjct: 270 GLDLGAVLERLRLRGASGVLVEGGGQTARRFVAGGLVNKMTLFYAPRLAGADGVP 324


>gi|47497547|dbj|BAD19619.1| putative riboflavin biosynthesis protein ribD [Oryza sativa
           Japonica Group]
 gi|47847589|dbj|BAD21976.1| putative riboflavin biosynthesis protein ribD [Oryza sativa
           Japonica Group]
          Length = 622

 Score =  135 bits (341), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 106/358 (29%), Positives = 171/358 (47%), Gaps = 26/358 (7%)

Query: 23  GLTSTNPSVACLIVK--------DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYV 74
           GLTS +P+  C+I +        +  V+G G     G P AE+ A +EAGE ARGATAY+
Sbjct: 69  GLTSPHPNFGCVIARPQLETDNAEAWVVGEGFLYAQGTPCAELLAAQEAGEHARGATAYL 128

Query: 75  TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES-E 133
            LEP   YG S   +  +++ GI RVVV +  P   + G+ +Q L  +GI VD + E   
Sbjct: 129 NLEPGDCYGDSTAVST-LVQAGITRVVVGLRHPLKHLRGKAIQSLRNEGIQVDVVGEDLH 187

Query: 134 GKIFLHA----------YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            K+F  A           L R   +     LK A++ D  I  +   +  ++G  S+ +V
Sbjct: 188 SKLFKEALKSCLIVNAPLLYRAAFRVPFSVLKYAMTADGKIAASSGHASWVSGKSSRGRV 247

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
             LR +SDAI+VG  TV  DDP LT R   ++ H P+RI++     L  ++ +       
Sbjct: 248 FELRGRSDAIIVGGNTVRLDDPRLTAR--HVKGHVPVRIVMSQSLNLPEEANLWNVHDAY 305

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            ++         L      K + ++  D  + + +++    RG  S+L E G  +A S I
Sbjct: 306 TIVATQRGARRDLQKKLALKGVEVVEFDMLNPRDVMSYCYDRGYLSVLWECGGTLAASAI 365

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           ++ ++  +  + +  +IG    P+P+  G L  N M    D    DV  E I +++ +
Sbjct: 366 SASVIHKVYAFLAPKIIGGVNAPTPV--GELGMNQMTQAIDLI--DVSYEQIDRDMLM 419


>gi|46204084|ref|ZP_00209252.1| COG1985: Pyrimidine reductase, riboflavin biosynthesis
           [Magnetospirillum magnetotacticum MS-1]
          Length = 320

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 135/261 (51%), Gaps = 11/261 (4%)

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G +  GATA VTLEPC+H GR+ PCA  ++  G+  VV+ VDDP+   +G G   L   G
Sbjct: 27  GVDVAGATAVVTLEPCAHTGRTGPCADALVAAGVAEVVLAVDDPNPVATG-GAHRLRAAG 85

Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + V R +  +EG+  L  +LT       ++TLK A + D  +      S  ITG  ++  
Sbjct: 86  VRVVRGLRAAEGEELLRVWLTAVRRGTPYVTLKTATTLDGYVAAQDGTSRWITGPAAREH 145

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H +RA+ DAI+VG GT+LADDPELT R+ G   H P              +   + A  
Sbjct: 146 AHRVRAEVDAIVVGTGTLLADDPELTARVRG---HGPSH------DAAHDAASAARLAEH 196

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            P+ +V        A   R +   +++   RD+ ++L  L  R V  +LVEGG  +A +F
Sbjct: 197 QPLRVVVGLRGIPPAARVRGEGSELVHVLTRDVGEVLERLAEREVRHVLVEGGPTLATAF 256

Query: 303 INSRLVDSIILYRSQIVIGEG 323
           + +  VD +  Y + +++G G
Sbjct: 257 LAAGAVDELHAYVAPVLLGNG 277


>gi|237785569|ref|YP_002906274.1| diaminohydroxyphosphoribosylaminopyrimidinedeaminase
           [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758481|gb|ACR17731.1| diaminohydroxyphosphoribosylaminopyrimidinedeaminase
           [Corynebacterium kroppenstedtii DSM 44385]
          Length = 357

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/306 (33%), Positives = 151/306 (49%), Gaps = 32/306 (10%)

Query: 23  GLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G TS NP V  +I+  DG ++G+G T   G PHAEV A+ +AG+   GATA VTLEPC+H
Sbjct: 36  GTTSPNPPVGAVIIDADGRIVGQGHTQPAGGPHAEVMAVRDAGDATAGATAIVTLEPCAH 95

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG--KIFLH 139
            GR+ PC   ++  GI  VV  V DP+    G G + L++KG+ V     ++   +  L 
Sbjct: 96  TGRTGPCTDVLLSAGISTVVYAVPDPNPIAHG-GHEVLAEKGLTVIGGFHADEVRRGALR 154

Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199
           ++L R    R+ +TLK+A + D  +      S  IT   ++N VH  RA  DA++VG GT
Sbjct: 155 SWLHRIGTGRAMVTLKVAATLDGRVAAPDGTSQWITSADARNYVHRDRATRDALIVGTGT 214

Query: 200 VLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
           V+AD+P LT R     L  H P  +I+                             PV  
Sbjct: 215 VIADNPRLTARKPDGTLYAHQPDHVIV--------------------------GSRPVPE 248

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
            A    +    + D  DL  ++  L  +G   LL+EGG  +A + +   +VD I  Y + 
Sbjct: 249 EAKIFAHARSWHFDTHDLSHVIQELTQQGYVDLLIEGGPMLASAALEQGVVDQIHWYVAP 308

Query: 318 IVIGEG 323
            ++G G
Sbjct: 309 SILGSG 314


>gi|119716673|ref|YP_923638.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Nocardioides sp. JS614]
 gi|119537334|gb|ABL81951.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Nocardioides sp. JS614]
          Length = 345

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 146/316 (46%), Gaps = 43/316 (13%)

Query: 28  NPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86
           NP V C+++ +DG  +  G     G  HAE  AL  AG  ARGATA VTLEPC+H GR+ 
Sbjct: 18  NPRVGCVLLDEDGRTVAEGHHRGAGTAHAEADALARAGVRARGATAVVTLEPCNHTGRTG 77

Query: 87  PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQ 145
           PCAQ +I  G+RRVV    DP+   +G G   L   G+ V+  ++  E  +    +    
Sbjct: 78  PCAQALIGAGVRRVVFAQPDPNPAAAG-GADTLRAAGVDVESGLLHVESGLLNRFWAFGL 136

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
              R  +T K A + D     A   S  ++   ++   H LRA+ D +LVG  T+  DDP
Sbjct: 137 AHGRPFVTWKFATTLDGRSAAADGTSRWVSSRAARLDTHRLRARCDVMLVGTNTIEVDDP 196

Query: 206 ELTCRLNGLQ--EHSPMRII-----LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
            LT R    +  EH P+R +     LDP  ++  D +    A                  
Sbjct: 197 LLTVRDEHDRPLEHQPLRAVMGERDLDPGRRV-FDQRPANGA------------------ 237

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
                    ++   RD +K L  L       + +EGG  +A +F+ + LVD I+ Y + +
Sbjct: 238 -------ESVHLRTRDPEKALAELAALDRQHVFLEGGPTLAAAFLKAGLVDEIVAYVAPM 290

Query: 319 VIGEG-------GIPS 327
           ++G G       GIP+
Sbjct: 291 LLGSGRAAVGDLGIPT 306


>gi|270339625|ref|ZP_06005479.2| riboflavin biosynthesis protein RibD [Prevotella bergensis DSM
           17361]
 gi|270334334|gb|EFA45120.1| riboflavin biosynthesis protein RibD [Prevotella bergensis DSM
           17361]
          Length = 365

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/337 (32%), Positives = 152/337 (45%), Gaps = 56/337 (16%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D R+M   L+ +R        NP V  +IV +DG +IG G     G  HAEV A      
Sbjct: 29  DERYMRRCLQLARNGWQNAKPNPMVGAVIVSRDGRIIGEGYHVRCGEGHAEVNAFASVRP 88

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           E     + +T YV+LEPCSH+G++PPCA  I++ G+RRVV    DP  +V GRG+  + +
Sbjct: 89  EDEVLLKESTVYVSLEPCSHWGKTPPCADLIVKKGVRRVVCGCIDPFSKVQGRGVAHIRK 148

Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA------GCG---- 170
            GI V   ++E E       ++T   EKR +I LK A +++  I  A      G G    
Sbjct: 149 AGIEVTVGVLEQECLELNRRFITFNTEKRPYILLKWAQTENGKIASASVTPAVGSGVSTV 208

Query: 171 ----SVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDP 226
                + ++   +K  VH LRA++DAILVG  TV AD P+L  R        P R++L  
Sbjct: 209 MTVAPLVLSSAFTKMLVHKLRAENDAILVGHETVRADHPQLNTR--SWSGRDPERLVL-- 264

Query: 227 HFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286
                                   +D P     F             D+ KLL  L    
Sbjct: 265 --------------------ARCTDDVPQWFKCF------------DDMDKLLQYLYNNR 292

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
             SL+VEGGA    SF+   L D I +  +   + EG
Sbjct: 293 RQSLIVEGGAVTLRSFLERGLWDEIRVETAPWSVAEG 329


>gi|283851293|ref|ZP_06368575.1| riboflavin biosynthesis protein RibD [Desulfovibrio sp. FW1012B]
 gi|283573243|gb|EFC21221.1| riboflavin biosynthesis protein RibD [Desulfovibrio sp. FW1012B]
          Length = 383

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/211 (37%), Positives = 125/211 (59%), Gaps = 5/211 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           DA FM+ AL  +    G  + NP V  ++V+DG ++  G     G PHAEV+ L +A   
Sbjct: 4   DADFMARALVLAERGRGFVTPNPRVGAVLVRDGAIVAEGWHKVFGGPHAEVECLHDAEKK 63

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G +  GAT YVTLEPC+H+G++PPC++ +++  + RVVV   DP+  V+G G + L Q G
Sbjct: 64  GVDPAGATMYVTLEPCNHFGKTPPCSRTLLDARVGRVVVGCLDPN-PVAGGGAELLRQGG 122

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + V   ++  E +  +  ++  +   R  +T+K+A++ D  I      S  ++G  S+ +
Sbjct: 123 VDVTVGVLALECRDAIADFVVWKTLGRPFVTVKLAMTLDGRIASRTGDSGWVSGEASRAR 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNG 213
           VH +RA   A+LVG GT+ AD+P LT RL+G
Sbjct: 183 VHAMRAACQAVLVGGGTLAADNPRLTHRLDG 213


>gi|329946974|ref|ZP_08294386.1| riboflavin biosynthesis protein RibD [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328526785|gb|EGF53798.1| riboflavin biosynthesis protein RibD [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 400

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/301 (32%), Positives = 143/301 (47%), Gaps = 28/301 (9%)

Query: 28  NPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE---AGEEARGATAYVTLEPCSHYG 83
           NP V C+I+  DG V+  G     G  HAEV AL     AG  A+G TA VTLEPC H G
Sbjct: 43  NPRVGCVILSADGDVLAEGHHRGAGTAHAEVDALTNLAAAGASAQGTTAVVTLEPCDHEG 102

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH-AYL 142
           R+ PC Q ++  G+  V+   DDP  +  G G   L   G+ V R + S+    L+  + 
Sbjct: 103 RTGPCVQALLAAGVAEVIYAQDDPTEQAGG-GAATLEAAGVRVRRGLCSQDAARLNRPWF 161

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
                 R  +T K+A + D  I  A   S  IT   ++   H LR Q DA++VG GT LA
Sbjct: 162 LAVTRGRPMVTWKLAATLDGRIAAADGTSRWITPAAARRDAHHLRRQCDAVMVGTGTALA 221

Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
           DDP LT R +   E +P          L     ++ +  L P   V  +D          
Sbjct: 222 DDPALTVR-DETGEPAPT--------HLQPLRVVVGSRRLPPASRVLADD---------- 262

Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
              + +     D + +L +L  R +  +L+EGG  +A +F+ + +VD ++ Y +  ++G 
Sbjct: 263 ---HYLLLPDHDPRTVLAVLAEREIRHVLLEGGPTLATAFLRAGVVDEVVAYTAPALLGA 319

Query: 323 G 323
           G
Sbjct: 320 G 320


>gi|255547562|ref|XP_002514838.1| riboflavin-specific deaminase, putative [Ricinus communis]
 gi|223545889|gb|EEF47392.1| riboflavin-specific deaminase, putative [Ricinus communis]
          Length = 600

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 179/368 (48%), Gaps = 21/368 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           DA F+  A   +    G TS +P+  C+I    G V G G     G   AEVQA+E AGE
Sbjct: 37  DAAFIKRAAELADKSAGCTSPHPNFGCVIATATGNVAGEGYLYAQGTKPAEVQAVEAAGE 96

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            ++GATAY+ LEP   +G     +  +++ GI RVVV +  P   + G  +  L   G+ 
Sbjct: 97  WSKGATAYLNLEPGDCHGDHTAVSS-LVQAGITRVVVGIRHPLRHLQGNAVHALRNHGLQ 155

Query: 126 VD--------RMMESEGK--IFLHAYLTRQVEKRSHIT-LKIAVSQDNMIGMAGCGSVPI 174
           V+        +++E   K  + ++A L  +   R   + LK A++ D  I  +   +  +
Sbjct: 156 VEVLGEDLQSKIIEDARKSCLLVNAPLIHRATSRVPFSVLKYAMTLDGKIAASSGHAAWV 215

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           +   S+N+V  LR++SDAI+VG  TV  D+P LT R  G  E+ PMRI++     L  ++
Sbjct: 216 SSRKSRNRVFELRSRSDAIIVGGNTVRRDNPRLTARHGG--EYMPMRIVMSQTLDLPEEA 273

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
            +     ++ +++               K + ++  +  + ++++     RG  S+L E 
Sbjct: 274 NLWDVCDVSTIVVTQRGARRSFQKLLASKGVEVVEFEILNPREVMEYFHDRGYLSILWEC 333

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-GYLEKNFMCVRRDYFGSDVCLE 353
           G  +A S I++ ++  +  + +  +IG    PSP+ E G +E   M    D    DVC E
Sbjct: 334 GGTLAASAISAGVIHKVFAFVAPKIIGGKNAPSPVGELGMVE---MTQALDLV--DVCYE 388

Query: 354 YIGKNLCL 361
            +G ++ +
Sbjct: 389 QVGPDMLI 396


>gi|242042489|ref|XP_002468639.1| hypothetical protein SORBIDRAFT_01g049430 [Sorghum bicolor]
 gi|241922493|gb|EER95637.1| hypothetical protein SORBIDRAFT_01g049430 [Sorghum bicolor]
          Length = 396

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 161/317 (50%), Gaps = 23/317 (7%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            DA++M   +  +R   G TS NP V C+IV+DG V+G G     G PHAEV AL +AG 
Sbjct: 51  LDAQYMRRCVELARKAAGHTSPNPMVGCVIVRDGRVVGEGFHPKAGQPHAEVFALRDAGN 110

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            A  ATAYV+LEPC+HYGR+PPC + +I   ++ VVV + DP+  V+ +G++ L   GI 
Sbjct: 111 LAENATAYVSLEPCNHYGRTPPCTEALINAKVKEVVVGMTDPNPIVASKGIEKLQGAGIN 170

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI-GMAGCGSVPITGFISKNQV 183
           V   + E+  +    AY+ R +  ++  TL+  +S + ++    G G+    G+ S+   
Sbjct: 171 VRVGVEEALCRKLNEAYIHRMLTGKAFATLRATLSMNGIVTNQIGKGADQSGGYYSQ--- 227

Query: 184 HLLRAQSDAILVGIGTVLADDPELT-CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
             L  + D ++  I + LA    L   R  G  +  P+ II+       L    +     
Sbjct: 228 --LMKEYDGVI--ISSDLAKMSSLPLSREAGANQ--PLYIIIAQGENSRLHIPSLSEEHA 281

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV------EGGA 296
           + VI++   D PV A       + +      DL+ +L +L  RG+ S+LV      E  A
Sbjct: 282 SKVIVLA--DSPVTAA---PAGVEVAVLRQIDLESILQLLAQRGLCSVLVDFREATESFA 336

Query: 297 AVAHSFINSRLVDSIIL 313
           ++ + F   +LV  +++
Sbjct: 337 SLLNDFQEDKLVQKVVV 353


>gi|120602900|ref|YP_967300.1| riboflavin biosynthesis protein RibD [Desulfovibrio vulgaris DP4]
 gi|120563129|gb|ABM28873.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Desulfovibrio
           vulgaris DP4]
          Length = 377

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/345 (31%), Positives = 170/345 (49%), Gaps = 30/345 (8%)

Query: 10  FMSAALRFS---RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           FM  A+  +   RW+    + NP+V  ++V+DG V+ RG     G PHAEV+ L +A   
Sbjct: 8   FMREAIALAERGRWYA---APNPTVGAVLVRDGEVVARGWHTGYGKPHAEVECLRDAASK 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G +    T  VTLEPC+H+G++PPC+  I++ GI RVVV + DP+   SG G ++L   G
Sbjct: 65  GVDPAHCTLVVTLEPCNHHGKTPPCSHAIVKAGITRVVVGLADPNPVASG-GAEYLRAHG 123

Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + VD  + E E    +  +LT ++    ++ LK+A + D  I      S  I+G  ++  
Sbjct: 124 VTVDMGVCEQECHDLVADFLTWKLTDLPYVILKLASTLDGRIATRSGHSQWISGEEARAT 183

Query: 183 VHLLRAQ----SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPH----------F 228
           VH LRA+      A+LVG  T+  DDP+LT R+  L    PM ++   H          F
Sbjct: 184 VHELRARIGEAGGAVLVGGTTLYTDDPQLTARVAPLPRRQPMAVVATRHLPHHDALPRIF 243

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK-LLTILVGRGV 287
           +      +I T  +      TE  D +         + +      DL+  L+ +    GV
Sbjct: 244 RERPGQCVIWTDAIG---AGTEAADTLRTSGVCVMALPLTPAGRLDLRAGLVRLRDDHGV 300

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
             +L EGG  +A S + + LV    L+ +  +IG+    +PL +G
Sbjct: 301 EHVLCEGGGKLALSLLEAGLVGEFHLHMAPKIIGDAEA-APLFDG 344


>gi|215430296|ref|ZP_03428215.1| putative bifunctional riboflavin biosynthesis protein RIBG:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           [Mycobacterium tuberculosis EAS054]
 gi|289753491|ref|ZP_06512869.1| riboflavin-specific deaminase [Mycobacterium tuberculosis EAS054]
 gi|289694078|gb|EFD61507.1| riboflavin-specific deaminase [Mycobacterium tuberculosis EAS054]
          Length = 339

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 105/324 (32%), Positives = 156/324 (48%), Gaps = 34/324 (10%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
           V S D   M  A+  S    G T  NP V  +IV  +G ++G G T   G  HAEV AL 
Sbjct: 6   VKSID-EAMGLAIEHSYQVKGTTYPNPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALR 64

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG  A GA   VT+EPC+HYG++PPC   +IE  +  VV  V DP+  ++G G   LS 
Sbjct: 65  RAGGLATGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADPN-GIAGGGAGRLSA 123

Query: 122 KGIIVDR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
            G+ V    + E      L  +L +Q     ++T K A S D     A   S  I+   +
Sbjct: 124 AGLQVRSGVLAEQVAAGPLREWLHKQRTGLPYVTWKYATSIDGRSAAADGSSQWISSEAA 183

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKII 237
           +  +H  RA +DAILVG GTVLADDP LT RL    L    P+R+++     +  +++++
Sbjct: 184 RLDLHRRRAIADAILVGTGTVLADDPALTARLADGSLAPQQPLRVVVGKR-DIPPEARVL 242

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                  +I   E  + + AL+ R                          T +L+EGG  
Sbjct: 243 NDEARTMMIRTHEPMEVLRALSDR--------------------------TDVLLEGGPT 276

Query: 298 VAHSFINSRLVDSIILYRSQIVIG 321
           +A +F+ +  ++ I+ Y + I++G
Sbjct: 277 LAGAFLRAGAINRILAYVAPILLG 300


>gi|332644755|gb|AEE78276.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 173/368 (47%), Gaps = 21/368 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           DA F+  A   S    GLTS +P+  C+I    G V G G     G   AE  A+E AGE
Sbjct: 32  DAAFIRRAADLSEMSAGLTSPHPNFGCVIATSSGKVAGEGYLYAQGTKPAEALAVEAAGE 91

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            +RGATAY+ +EP   +G     +  +++ GI RVVV +  P   + G  ++ L   GI 
Sbjct: 92  FSRGATAYLNMEPGDCHGDHTAVSA-LVQAGIERVVVGIRHPLQHLRGSAIRELRSHGIE 150

Query: 126 VDRMMES-EGKIFLHA----------YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           V+ + E  E K+   A           + R   +     LK A++ D  I  +   +  I
Sbjct: 151 VNVLGEDFESKVLEDARKSCLLVNAPLIHRACSRVPFSVLKYAMTLDGKIAASSGHAAWI 210

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           +  +S+ +V  LR  SDA++VG  TV  DDP LT R    Q H+P RI++     L   +
Sbjct: 211 SSKLSRTRVFELRGGSDAVIVGGNTVRQDDPRLTARHG--QGHTPTRIVMTQSLDLPEKA 268

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
            +   + ++ +++               K + ++  D  + ++++     RG  S+L E 
Sbjct: 269 NLWDVSEVSTIVVTQRGARKSFQKLLASKGVEVVEFDMLNPREVMEYFHLRGYLSILWEC 328

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-GYLEKNFMCVRRDYFGSDVCLE 353
           G  +A S I+S ++  ++ + +  +IG    PSP+ + G +E   M    +    DVC E
Sbjct: 329 GGTLAASAISSSVIHKVVAFVAPKIIGGSKAPSPVGDLGMVE---MTQALNLI--DVCYE 383

Query: 354 YIGKNLCL 361
            +G ++ +
Sbjct: 384 QVGPDMLV 391


>gi|311742370|ref|ZP_07716179.1| riboflavin biosynthesis protein RibD [Aeromicrobium marinum DSM
           15272]
 gi|311313998|gb|EFQ83906.1| riboflavin biosynthesis protein RibD [Aeromicrobium marinum DSM
           15272]
          Length = 344

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 110/331 (33%), Positives = 163/331 (49%), Gaps = 42/331 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
            S  + R M  AL  +R   G    NP+V C+++   G  I  G T  GG  HAEV+AL 
Sbjct: 2   ASEHEIRAMRRALDLAR-DRGSCLPNPTVGCVLLDVHGEEISAGTTVPGGA-HAEVEALT 59

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AGE ARGATA VTLEPC+H+G + PC + ++  G+ RVVV   DP+   +G G++ L +
Sbjct: 60  AAGERARGATAVVTLEPCAHHGNTGPCVEALVGAGVARVVVAETDPNPVAAG-GVEALRR 118

Query: 122 KGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            G+ V+  ++  E +    A+       R  +T K A + D +       S  ITG  ++
Sbjct: 119 AGLEVETGILGDEVEPLNRAWRFAVTRGRPFVTWKYAATLDGLSAAPDGSSQWITGPEAR 178

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILD----PHFKLSL 232
             V + RAQ DAI+ G G VLADDP LT R    L   +E  P+R+++     P +    
Sbjct: 179 RDVQVFRAQCDAIVAGTGAVLADDPRLTVRGTDDLPVARERQPLRVVVGETTIPSYYRVF 238

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
           D        +AP + V                        RD   +L+ LV R +  + +
Sbjct: 239 DR-------VAPTLQVP----------------------SRDPAAVLSTLVERDIRHVWL 269

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           EGG  +A +F N+ L+D +I Y +  ++G G
Sbjct: 270 EGGPRLAGAFWNAGLIDRVIGYIAPSMLGSG 300


>gi|145295718|ref|YP_001138539.1| hypothetical protein cgR_1645 [Corynebacterium glutamicum R]
 gi|140845638|dbj|BAF54637.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 328

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 114/343 (33%), Positives = 168/343 (48%), Gaps = 41/343 (11%)

Query: 23  GLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G TS NP V  +I+  DG V+G G TA  G PHAEV AL  AG  A G TA VTLEPC+H
Sbjct: 19  GTTSPNPPVGAVILDADGEVVGVGATAPPGGPHAEVVALAAAGARANGGTAVVTLEPCNH 78

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
           YGR+ PC++ +++ GI  V     DP    +G G  +L++ G  VD     E    L  +
Sbjct: 79  YGRTGPCSKALLDAGIAHVFYANADPFPSAAGGG-AFLAEAG--VDTHFLDERIRVLEPW 135

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
           L      R H+TLK A + D   G     S  ITG  ++  VH  R++ DAI+VG GT L
Sbjct: 136 LQATRLGRPHVTLKFASTVDGFAGATDGTSQWITGPDARAFVHEDRSKRDAIIVGTGTAL 195

Query: 202 ADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
            D+P LT R  +GL E+ P R+++    ++  DS + +                      
Sbjct: 196 TDNPSLTARTEDGLYENQPRRVVIGSR-EVPADSNLAR---------------------- 232

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
                 + Y     + + L++L  +G   +L+EGG  +A + +   +VD +  Y +  ++
Sbjct: 233 ------LGYEQYAGIPEALSVLWDKGCRDILIEGGPTLAGAALRLGIVDQVQAYVAPALL 286

Query: 321 GEGG--IPSPLE---EGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           G G   I  P E   +  +  +   VR+   GSDV +E + K 
Sbjct: 287 GAGRSVINWPQETTMDQIMRFDTTSVRQ--LGSDVLIEMMRKE 327


>gi|15232791|ref|NP_190323.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
           thaliana]
 gi|5541706|emb|CAB51211.1| putative protein [Arabidopsis thaliana]
 gi|332644754|gb|AEE78275.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis
           thaliana]
          Length = 599

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 173/368 (47%), Gaps = 21/368 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           DA F+  A   S    GLTS +P+  C+I    G V G G     G   AE  A+E AGE
Sbjct: 32  DAAFIRRAADLSEMSAGLTSPHPNFGCVIATSSGKVAGEGYLYAQGTKPAEALAVEAAGE 91

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            +RGATAY+ +EP   +G     +  +++ GI RVVV +  P   + G  ++ L   GI 
Sbjct: 92  FSRGATAYLNMEPGDCHGDHTAVSA-LVQAGIERVVVGIRHPLQHLRGSAIRELRSHGIE 150

Query: 126 VDRMMES-EGKIFLHA----------YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           V+ + E  E K+   A           + R   +     LK A++ D  I  +   +  I
Sbjct: 151 VNVLGEDFESKVLEDARKSCLLVNAPLIHRACSRVPFSVLKYAMTLDGKIAASSGHAAWI 210

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           +  +S+ +V  LR  SDA++VG  TV  DDP LT R    Q H+P RI++     L   +
Sbjct: 211 SSKLSRTRVFELRGGSDAVIVGGNTVRQDDPRLTARHG--QGHTPTRIVMTQSLDLPEKA 268

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
            +   + ++ +++               K + ++  D  + ++++     RG  S+L E 
Sbjct: 269 NLWDVSEVSTIVVTQRGARKSFQKLLASKGVEVVEFDMLNPREVMEYFHLRGYLSILWEC 328

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-GYLEKNFMCVRRDYFGSDVCLE 353
           G  +A S I+S ++  ++ + +  +IG    PSP+ + G +E   M    +    DVC E
Sbjct: 329 GGTLAASAISSSVIHKVVAFVAPKIIGGSKAPSPVGDLGMVE---MTQALNLI--DVCYE 383

Query: 354 YIGKNLCL 361
            +G ++ +
Sbjct: 384 QVGPDMLV 391


>gi|78219882|gb|ABB39231.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 363

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 167/338 (49%), Gaps = 33/338 (9%)

Query: 19  RWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALEEA---GEEARGATAYV 74
           RW    TS NP V  ++VKDG  + RG  TAYG  PHAE++ L +A   G      T  V
Sbjct: 12  RW---ATSPNPCVGAVLVKDGQTVARGWHTAYGK-PHAEIECLRDAARRGVNPAECTLVV 67

Query: 75  TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESE 133
           TLEPC+H G++PPC+  +++ GIR VVV + DP+    G G  +L + G+ V+  +   E
Sbjct: 68  TLEPCNHTGKTPPCSIAVLQAGIRHVVVGMMDPNPVAQG-GANFLRENGVTVETGVCRQE 126

Query: 134 GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAI 193
            +  +  ++T +     +  +K+A + D  I      S  I+G  S+ +VH LR  +DA+
Sbjct: 127 CEDVVDDFITWKKTPLPYTIIKLASTLDGRIATRTGHSRWISGEESRRRVHELRRHADAV 186

Query: 194 LVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS------LDSKIIKTALLAP-VI 246
           +VG GT  AD+P+LTCRL G++   P+ +++      +      L  +  +T    P  +
Sbjct: 187 IVGGGTFRADNPQLTCRLEGIRRQ-PLAVVVTSQLPDAGAPMHLLQQRPHETIFWTPRAV 245

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG----RGVTSLLVEGGAAVAHSF 302
             +E  D + AL  R   ++    +C+    L T L G          L EGG  +A S 
Sbjct: 246 AASEKADALRALGVRVTGLDR---NCKGRLDLHTALAGLRSEYDCYHTLCEGGGMLALSM 302

Query: 303 INSRLVDSIILYRSQIVIG--------EGGIPSPLEEG 332
           +   +   + L+ +  ++         +G  PS +E+ 
Sbjct: 303 LEMNVAQELELHMAPKLLADAQARPLFDGRTPSTMEQA 340


>gi|15608547|ref|NP_215925.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Mycobacterium tuberculosis H37Rv]
 gi|15840867|ref|NP_335904.1| riboflavin-specific deaminase [Mycobacterium tuberculosis CDC1551]
 gi|148661200|ref|YP_001282723.1| riboflavin-specific deaminase [Mycobacterium tuberculosis H37Ra]
 gi|148822629|ref|YP_001287383.1| bifunctional riboflavin biosynthesis protein ribG:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Mycobacterium tuberculosis F11]
 gi|167968448|ref|ZP_02550725.1| bifunctional riboflavin biosynthesis protein ribG:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           [Mycobacterium tuberculosis H37Ra]
 gi|215403256|ref|ZP_03415437.1| bifunctional riboflavin biosynthesis protein ribG:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           [Mycobacterium tuberculosis 02_1987]
 gi|215411054|ref|ZP_03419862.1| bifunctional riboflavin biosynthesis protein ribG:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215445596|ref|ZP_03432348.1| bifunctional riboflavin biosynthesis protein ribG:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           [Mycobacterium tuberculosis T85]
 gi|218753118|ref|ZP_03531914.1| bifunctional riboflavin biosynthesis protein ribG:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           [Mycobacterium tuberculosis GM 1503]
 gi|253799541|ref|YP_003032542.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           KZN 1435]
 gi|254231651|ref|ZP_04924978.1| bifunctional riboflavin biosynthesis protein ribG :
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Mycobacterium tuberculosis C]
 gi|254364292|ref|ZP_04980338.1| bifunctional riboflavin biosynthesis protein ribG :
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254550423|ref|ZP_05140870.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289554800|ref|ZP_06444010.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           KZN 605]
 gi|289745160|ref|ZP_06504538.1| riboflavin-specific deaminase [Mycobacterium tuberculosis 02_1987]
 gi|289757515|ref|ZP_06516893.1| riboflavin-specific deaminase [Mycobacterium tuberculosis T85]
 gi|289761568|ref|ZP_06520946.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Mycobacterium tuberculosis GM 1503]
 gi|294994971|ref|ZP_06800662.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           210]
 gi|297633965|ref|ZP_06951745.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           KZN 4207]
 gi|297730954|ref|ZP_06960072.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           KZN R506]
 gi|298524915|ref|ZP_07012324.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Mycobacterium tuberculosis 94_M4241A]
 gi|313658287|ref|ZP_07815167.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           KZN V2475]
 gi|2829534|sp|P71677|RIBD_MYCTU RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
           RecName:
           Full=Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase; Includes: RecName:
           Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|1542917|emb|CAB02188.1| PROBABLE BIFUNCTIONAL riboflavin biosynthesis protein RIBG :
           Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (Riboflavin-specific deaminase) +
           5-amino-6-(5-phosphoribosylamino) uracil reductase (HTP
           reductase) [Mycobacterium tuberculosis H37Rv]
 gi|13881067|gb|AAK45718.1| riboflavin-specific deaminase [Mycobacterium tuberculosis CDC1551]
 gi|124600710|gb|EAY59720.1| bifunctional riboflavin biosynthesis protein ribG :
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Mycobacterium tuberculosis C]
 gi|134149806|gb|EBA41851.1| bifunctional riboflavin biosynthesis protein ribG :
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148505352|gb|ABQ73161.1| riboflavin-specific deaminase [Mycobacterium tuberculosis H37Ra]
 gi|148721156|gb|ABR05781.1| bifunctional riboflavin biosynthesis protein ribG:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Mycobacterium tuberculosis F11]
 gi|253321044|gb|ACT25647.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           KZN 1435]
 gi|289439432|gb|EFD21925.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           KZN 605]
 gi|289685688|gb|EFD53176.1| riboflavin-specific deaminase [Mycobacterium tuberculosis 02_1987]
 gi|289709074|gb|EFD73090.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Mycobacterium tuberculosis GM 1503]
 gi|289713079|gb|EFD77091.1| riboflavin-specific deaminase [Mycobacterium tuberculosis T85]
 gi|298494709|gb|EFI30003.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Mycobacterium tuberculosis 94_M4241A]
 gi|323720073|gb|EGB29179.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           CDC1551A]
 gi|326903030|gb|EGE49963.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           W-148]
 gi|328459289|gb|AEB04712.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           KZN 4207]
          Length = 339

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 107/324 (33%), Positives = 152/324 (46%), Gaps = 34/324 (10%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
           V S D   M  A+  S    G T   P V  +IV  +G ++G G T   G  HAEV AL 
Sbjct: 6   VKSID-EAMGLAIEHSYQVKGTTYPKPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALR 64

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG  A GA   VT+EPC+HYG++PPC   +IE  +  VV  V DP+  ++G G   LS 
Sbjct: 65  RAGGLAAGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADPN-GIAGGGAGRLSA 123

Query: 122 KGIIVDR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
            G+ V    + E      L  +L +Q     H+T K A S D     A   S  I+   +
Sbjct: 124 AGLQVRSGVLAEQVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAA 183

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKII 237
           +  +H  RA +DAILVG GTVLADDP LT RL    L    P+R                
Sbjct: 184 RLDLHRRRAIADAILVGTGTVLADDPALTARLADGSLAPQQPLR---------------- 227

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                   ++V + D P  A     +    +     +  ++L  L  R  T +L+EGG  
Sbjct: 228 --------VVVGKRDIPPEARVLNDE-ARTMMIRTHEPMEVLRALSDR--TDVLLEGGPT 276

Query: 298 VAHSFINSRLVDSIILYRSQIVIG 321
           +A +F+ +  ++ I+ Y + I++G
Sbjct: 277 LAGAFLRAGAINRILAYVAPILLG 300


>gi|308231834|ref|ZP_07663946.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu001]
 gi|308369792|ref|ZP_07419077.2| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu002]
 gi|308370712|ref|ZP_07666996.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu003]
 gi|308371959|ref|ZP_07667277.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu004]
 gi|308373132|ref|ZP_07667517.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu005]
 gi|308374304|ref|ZP_07667756.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu006]
 gi|308375454|ref|ZP_07668025.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu007]
 gi|308376713|ref|ZP_07668330.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu008]
 gi|308377721|ref|ZP_07480168.2| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu009]
 gi|308378931|ref|ZP_07668864.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu010]
 gi|308380068|ref|ZP_07669113.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu011]
 gi|308215903|gb|EFO75302.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu001]
 gi|308326399|gb|EFP15250.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu002]
 gi|308331085|gb|EFP19936.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu003]
 gi|308334898|gb|EFP23749.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu004]
 gi|308338707|gb|EFP27558.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu005]
 gi|308342394|gb|EFP31245.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu006]
 gi|308346232|gb|EFP35083.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu007]
 gi|308350184|gb|EFP39035.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu008]
 gi|308354825|gb|EFP43676.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu009]
 gi|308358776|gb|EFP47627.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu010]
 gi|308362713|gb|EFP51564.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu011]
          Length = 337

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 107/324 (33%), Positives = 152/324 (46%), Gaps = 34/324 (10%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
           V S D   M  A+  S    G T   P V  +IV  +G ++G G T   G  HAEV AL 
Sbjct: 4   VKSID-EAMGLAIEHSYQVKGTTYPKPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALR 62

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG  A GA   VT+EPC+HYG++PPC   +IE  +  VV  V DP+  ++G G   LS 
Sbjct: 63  RAGGLAAGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADPN-GIAGGGAGRLSA 121

Query: 122 KGIIVDR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
            G+ V    + E      L  +L +Q     H+T K A S D     A   S  I+   +
Sbjct: 122 AGLQVRSGVLAEQVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAA 181

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKII 237
           +  +H  RA +DAILVG GTVLADDP LT RL    L    P+R                
Sbjct: 182 RLDLHRRRAIADAILVGTGTVLADDPALTARLADGSLAPQQPLR---------------- 225

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                   ++V + D P  A     +    +     +  ++L  L  R  T +L+EGG  
Sbjct: 226 --------VVVGKRDIPPEARVLNDE-ARTMMIRTHEPMEVLRALSDR--TDVLLEGGPT 274

Query: 298 VAHSFINSRLVDSIILYRSQIVIG 321
           +A +F+ +  ++ I+ Y + I++G
Sbjct: 275 LAGAFLRAGAINRILAYVAPILLG 298


>gi|297815908|ref|XP_002875837.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321675|gb|EFH52096.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 579

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 172/367 (46%), Gaps = 19/367 (5%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           + DA F+  A   +    GLTS +P+  C+I    G V G G     G   AE  A+E A
Sbjct: 29  AIDAAFIRRAADLAEMSAGLTSPHPNFGCVIATSSGKVAGEGYLYAQGTKPAEALAVEAA 88

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE +RG+TAY+ +EP   +G     +  +++ GI RVVV +  P   + G  ++ L  +G
Sbjct: 89  GEFSRGSTAYLNMEPGDCHGDHTAVSA-LVQAGIDRVVVGIRHPLQHLRGSAIRELRSQG 147

Query: 124 IIVDRMMES-EGKIFLHA----------YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172
           I V+ + E  E K+   A           + R   +     LK A++ D  I  +   + 
Sbjct: 148 IEVNVLGEDFESKVLEEARKSCLLVNAPLIHRACSRVPFSVLKYAMTLDGKIAASSGHAA 207

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
            I+  +S+ +V  LR  SDA++VG  TV  DDP LT R    Q H+P RI++     L  
Sbjct: 208 WISSKLSRTRVFELRGGSDAVIVGGNTVRQDDPRLTARHG--QGHTPTRIVMTQSLDLPE 265

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
            + +   A ++ +++               K + ++  D  + ++++     RG  S+L 
Sbjct: 266 KANLWDVAEVSTIVVTQRGARKSFQKFLASKGVEVVEFDMLNPREVMEYFHLRGYLSILW 325

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           E G  +A S I+S ++  ++ + +  +IG    PSP+  G L    M    +    DVC 
Sbjct: 326 ECGGTLAASAISSSVIHKVVAFVAPKIIGGSKAPSPV--GDLGMVEMTQALNLI--DVCY 381

Query: 353 EYIGKNL 359
           E +G ++
Sbjct: 382 EQVGPDM 388


>gi|213027853|ref|ZP_03342300.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 320

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 113/323 (34%), Positives = 164/323 (50%), Gaps = 28/323 (8%)

Query: 54  HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           HAEV AL  AG +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+G
Sbjct: 3   HAEVHALRMAGAKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAG 62

Query: 114 RGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172
           RGL  L Q GI V   +M SE +     +L R      ++ LK+  S D    MA   S 
Sbjct: 63  RGLYRLQQAGIAVSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQ 122

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMR 221
            IT   ++  V  LRAQS AIL    TVLADDP LT R   L         QE+   P+R
Sbjct: 123 WITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVR 182

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKK 277
           I++D   +++   +I++      +    E+     D V  ++    N ++      DL  
Sbjct: 183 IVIDSQNRVTPAHRIVQQPGETWIARTQEDSHAWPDSVRTISVPAHNGHL------DLVV 236

Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEG 332
           L+  L  + + S+ VE G  +A + + + LVD +I+Y +  ++G        +P  LE+ 
Sbjct: 237 LMMQLGRQQINSIWVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKL 295

Query: 333 YLEKNFMCVRRDYFGSDVCLEYI 355
                F      + G DVCL  +
Sbjct: 296 ADAPQFTFSEIRHVGPDVCLHMV 318


>gi|298529749|ref|ZP_07017152.1| riboflavin biosynthesis protein RibD [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511185|gb|EFI35088.1| riboflavin biosynthesis protein RibD [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 371

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 155/326 (47%), Gaps = 12/326 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           + FM  AL  +R   G T+ NP V  L+     ++G+G     G  HAEV+A+E A E  
Sbjct: 4   SEFMLKALGLARQAKGFTAPNPCVGALVTCGDRIMGKGWHRAPGENHAEVEAIENARENG 63

Query: 68  RGATA---YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
              ++   YVTLEPC+H+GR+PPC   +I+ GI  +++   DP+ +V G G ++L   G+
Sbjct: 64  ADLSSCRMYVTLEPCNHHGRTPPCTAAVIQAGIPEIIIGARDPNSQVQGGGAEFLRNHGL 123

Query: 125 IVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V   +E +  + L A +   Q   R ++ LK A + D  I      S  +T   ++  V
Sbjct: 124 RVTVGVEEQKCLDLIADFSLWQNSGRPYVYLKTASTLDGRIATRTGHSRWVTSANARQMV 183

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H LR+   A+LVG  T   D+P LTCR+  ++ + P  ++L            +     +
Sbjct: 184 HQLRSIVGAVLVGGNTFYQDNPALTCRIQEVK-NQPWAVVLTSRLPDPDQDFYLLQKRAS 242

Query: 244 PVIIVTENDDPV--LALAFRKKNINIIYCDCR----DLKKLLTILVGR-GVTSLLVEGGA 296
             I  T+ +      A     +   ++  D      DLK  L +L    G+  LL EGG 
Sbjct: 243 RTIFWTDKNSAASPRAAGLEARGCRVMGLDAEGPGLDLKLGLEMLRRETGIYYLLCEGGG 302

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGE 322
            +A S +   L D +  + +  ++G+
Sbjct: 303 QLASSLLQQGLADEVWAFVALKILGD 328


>gi|311113483|ref|YP_003984705.1| riboflavin biosynthesis protein RibD [Rothia dentocariosa ATCC
           17931]
 gi|310944977|gb|ADP41271.1| riboflavin biosynthesis protein RibD [Rothia dentocariosa ATCC
           17931]
          Length = 415

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 154/329 (46%), Gaps = 40/329 (12%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA-- 63
           D R MS A+  +R   G+   NP V  +I    G V+  G     G PHAE   L +A  
Sbjct: 44  DDRAMSLAIEAAR--QGIRGANPLVGAVITNSAGQVLHIGWHRGAGTPHAEADVLAQARA 101

Query: 64  -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
            G +   A  YV+LEPC+H G++ PC+  I E GI +V     D   + SG G ++L   
Sbjct: 102 AGTDMSDAKMYVSLEPCNHTGKTGPCSHAIKEAGISQVFYAYPDRSAQASG-GAEYLRSH 160

Query: 123 GIIVDRMME-SEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           G++   M E +E    L+  +     EKR  IT+K A + D  I  A   S  ITG  ++
Sbjct: 161 GVVTTYMREFAEDSYALNERWFISVAEKRPFITVKSASTLDGFIAAADGTSKWITGSQAR 220

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQ-EHSPMRIILDPHFKLSLDSKIIK 238
              HL+R ++DA+++G  T L D+P L  R ++G + +  P+R+++              
Sbjct: 221 ADGHLIRKRADAVMIGTRTTLLDNPSLDARDISGQRYKKQPLRVVMG------------- 267

Query: 239 TALLAPVIIVTENDDP----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
                      E D P    V  L  R    N +     + + LL  L  RGV  L++EG
Sbjct: 268 -----------ETDIPSTYKVCGLGTRDPE-NYMQVYTHEPRVLLDELYSRGVRHLMIEG 315

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           G  +   F    L+D ++ YR+ I++G G
Sbjct: 316 GPGMVGLFTGEDLLDELVWYRAPILMGHG 344


>gi|225454196|ref|XP_002273879.1| PREDICTED: similar to cytidine/deoxycytidylate deaminase family
           protein [Vitis vinifera]
          Length = 379

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 148/289 (51%), Gaps = 10/289 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M   +  +R  +G TS NP V C+IVKDG V+G G     G PH EV AL +AG+ 
Sbjct: 28  DGFYMRRCVELARKAIGCTSPNPMVGCVIVKDGKVVGEGFHPKAGQPHGEVFALRDAGDL 87

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A  ATAYV+LEPC+HYGR+PPC + +I+  +++VV+ + DP+  V+ +G+  L   GI V
Sbjct: 88  AENATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVIGMVDPNPIVASKGVDRLRDAGIEV 147

Query: 127 DRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVS-QDNMIGMAGCGSVPITGFISKNQVH 184
              +E E  K    AY+ + +  +  +TL+ ++S   +++   G G     G+ S+    
Sbjct: 148 TVAVEEELCKKLNEAYIHQMLTGKPFVTLRYSLSINGHILDQLGEGVEEAGGYYSQ---- 203

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            L  + DAI++   TV         +  G  +  P+ I++           I  T   + 
Sbjct: 204 -LVQEYDAIILSPTTVTEKFSFPASQEPGANQ--PLHILIAKSPISPNQIPIPHTEATSK 260

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
           VII  +N+  V      +K I  +  D  +L  +L     +G+ S+L++
Sbjct: 261 VIIFADNETAVEP-EMVQKGIETVVLDQINLNAVLEYCKRQGLCSILLD 308


>gi|172040661|ref|YP_001800375.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Corynebacterium urealyticum DSM 7109]
 gi|171851965|emb|CAQ04941.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Corynebacterium urealyticum DSM 7109]
          Length = 357

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 118/323 (36%), Positives = 156/323 (48%), Gaps = 38/323 (11%)

Query: 20  WHV-GLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLE 77
           W   G T  NP V C+IV   G ++GRG T   G  HAEV AL+ AG  A GATAY TLE
Sbjct: 27  WQAAGSTRPNPPVGCVIVDSAGTILGRGATEPAGGRHAEVVALQAAGARAAGATAYATLE 86

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-----DRMMES 132
           PC+H GR+ PCA+ +I  G+  V     DP  +  G G + L   G+ V     +     
Sbjct: 87  PCNHTGRTGPCAEALIAAGVAEVHYLFADPG-KAEGGGGERLRAAGVTVSGPYLEPFHLG 145

Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
           E +  +  +L      R H+TLK A + + M       S  ITG  ++  VH  R   +A
Sbjct: 146 EHRFSVEPWLRAAYLGRPHVTLKFASTLNGMAAATDRTSQWITGPTARADVHADRQYREA 205

Query: 193 ILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251
           ILVG GTVLADDP+LT R  G++    P+R      F +          LL P       
Sbjct: 206 ILVGTGTVLADDPQLTARPGGVEGPRQPLR------FAVGQREIPSSARLLQPG------ 253

Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311
                ALA +       +   RDL+  LT L  +G++ +LVEGG  +A SF+   LVD I
Sbjct: 254 ---AHALAGQ-------HLPTRDLEAALTTLRRQGISDVLVEGGPELAGSFLAHGLVDEI 303

Query: 312 ILY-------RSQIVIGEGGIPS 327
             Y       R    +G+GGI S
Sbjct: 304 RAYLAPAWLPRGLPALGDGGIGS 326


>gi|52841411|ref|YP_095210.1| riboflavin biosynthesis protein RibD [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628522|gb|AAU27263.1| riboflavin biosynthesis protein RibD [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 357

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 151/333 (45%), Gaps = 11/333 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +F+ AAL  ++   G  + NPSV  + V++G +I +      G PHAE   L +   +  
Sbjct: 4   QFLLAALEQAKLGRGFCAPNPSVGAVAVQNGNIIAQAWHRGAGTPHAEQLLLSQIPPQTP 63

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD-VRVSGRGLQWLSQKGIIVD 127
           G T YVTLEPC+H+G++PPC   II  GI  VV    DP+ +       + L + GI V 
Sbjct: 64  GVTLYVTLEPCNHWGKTPPCVDAIINHGIEEVVFSYFDPNPIVAKSNSSEKLREHGIQVR 123

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            +      +F  +Y    +  +  +T+KIA + D  IG +    V ++  + +   H +R
Sbjct: 124 HIPVKAIDVFYKSYAYWTMTHKPRVTVKIAQTFDGKIGKSEGARVVLSNALCEQFTHQMR 183

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           A SD IL    TV  D+P +  RL+      P+ I+ D +  LS D+ I  TA    +  
Sbjct: 184 AASDVILTSAKTVQMDNPRMNARLDSGLVAKPVAIV-DRNLSLSDDTIIFSTAKHCHIY- 241

Query: 248 VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
                 P    A    N        +    DL+ ++T L   G   + VE G A+  +  
Sbjct: 242 ----HQPQANQAKTYPNSTHYAMPLQNGLMDLEAIITHLGQLGYHDVWVEAGGAIFSALH 297

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
           +  LV    LY     +G   I +  ++G  EK
Sbjct: 298 SKGLVHRTYLYLVPGSLGHQAISAYQQQGIFEK 330


>gi|309810737|ref|ZP_07704545.1| riboflavin biosynthesis protein RibD [Dermacoccus sp. Ellin185]
 gi|308435368|gb|EFP59192.1| riboflavin biosynthesis protein RibD [Dermacoccus sp. Ellin185]
          Length = 340

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 154/306 (50%), Gaps = 38/306 (12%)

Query: 28  NPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE---AGEEARGATAYVTLEPCSHYG 83
           NP V C++V  DG+++  G     G  HAE  A+ E    G + RGATAYVTLEPC+H G
Sbjct: 17  NPRVGCVVVDADGVILAEGYHRGAGTWHAEAAAINEAIATGVDLRGATAYVTLEPCAHTG 76

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM--MESEGKIFLHAY 141
           R+P CA+ +I  G+ RVV    DP+   +G G Q L + G+ V+++  + +  +     +
Sbjct: 77  RTPSCARALIRAGVARVVFGQPDPNGAAAG-GAQILREAGVAVEQVDTLAAASRDLNADW 135

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
                  R  +  K A + D     +   S  ITG  ++  VH  RA+  AI+VG GTVL
Sbjct: 136 TFSVTHARPFVRWKYASTLDGFSAASDGTSQWITGPAARVDVHAQRAEHGAIVVGTGTVL 195

Query: 202 ADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
           ADDP+LT R      G+Q+  P+R+++        D+ I  TA +         DD    
Sbjct: 196 ADDPQLTVRDAQGRAGVQQ--PLRVVVG-------DTPIPDTARVL--------DDAAST 238

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
           L   +++             +L  L  RG+ ++ +EGG  +A  F+ + LVD I+ Y + 
Sbjct: 239 LVLPRQSPT----------DVLAALHARGIHAVWLEGGPTLAAVFLRAGLVDEIVAYLAP 288

Query: 318 IVIGEG 323
            ++G G
Sbjct: 289 ALLGAG 294


>gi|225629653|ref|ZP_03787646.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225591494|gb|EEH12541.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 130

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 63/128 (49%), Positives = 86/128 (67%), Gaps = 1/128 (0%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FMS ALR +  ++G  + NP+V C+IVKDG ++  G T  GG PHAEV AL+ A + 
Sbjct: 3   DDHFMSIALRLAEKNLGNVAPNPAVGCVIVKDGTIVSEGYTGIGGRPHAEVVALQNAKDS 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GAT Y+TLEPC H+G + PC   II+  I+RVV+   DPD RVSGRG++ L + GI V
Sbjct: 63  THGATIYITLEPCCHHGVTGPCTAKIIKASIKRVVIATIDPDSRVSGRGMKALKEAGIEV 122

Query: 127 DR-MMESE 133
           ++ +M+ E
Sbjct: 123 EQGIMQKE 130


>gi|303238038|ref|ZP_07324581.1| riboflavin biosynthesis protein RibD [Prevotella disiens
           FB035-09AN]
 gi|302481828|gb|EFL44880.1| riboflavin biosynthesis protein RibD [Prevotella disiens
           FB035-09AN]
          Length = 335

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 109/361 (30%), Positives = 171/361 (47%), Gaps = 45/361 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59
           M     D  +M   L+ ++        NP V  +IV  DG +IG G     G  HAEV A
Sbjct: 3   MKQEDRDEMYMCRCLQLAKNGRLNAKPNPMVGAVIVSHDGKIIGEGYHVRCGEGHAEVNA 62

Query: 60  LEEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
                         +T YV+LEPCSHYG++PPCA  I+  G+RR+V    DP   V GRG
Sbjct: 63  FHSVRPTDEHLLSESTIYVSLEPCSHYGKTPPCADLIVRKGVRRMVCGCVDPFSEVQGRG 122

Query: 116 LQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC----- 169
           ++ + Q GI V   ++E E       ++ R    R +I LK A ++D  IG +       
Sbjct: 123 IERIRQAGIEVKVGVLEQECLALNREFIVRNTLHRPYILLKWAQTEDGFIGYSAAEAAEK 182

Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229
           G++ I+   +K  VH LRA  D I+VG  T   + P+LT R       +P++I+      
Sbjct: 183 GTLFISNGFTKMLVHKLRAAYDGIVVGRVTNDLEQPKLTVR--EWSGANPLKIV------ 234

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
           ++  ++ ++ A           D+ VL ++  K  I  I      L++       + V S
Sbjct: 235 MTSKAETMQNA-----------DENVLFVSSPKAMIEAI----GKLERT------KPVCS 273

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           ++VEGGA    SFI+  L D I +  +   I + G+ +P     L +N   V+R+++G+ 
Sbjct: 274 VIVEGGAQTLQSFIDENLFDEIRVETAPFSIHK-GVAAP----QLPQNIEVVKREFYGNS 328

Query: 350 V 350
           +
Sbjct: 329 I 329


>gi|169629892|ref|YP_001703541.1| bifunctional riboflavin biosynthesis protein RibG [Mycobacterium
           abscessus ATCC 19977]
 gi|169241859|emb|CAM62887.1| Probable bifunctional riboflavin biosynthesis protein RibG
           [Mycobacterium abscessus]
          Length = 340

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 120/360 (33%), Positives = 175/360 (48%), Gaps = 46/360 (12%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  A+R +    G T  NP V  +I+   G V G G T   G  HAEV AL  AG  ARG
Sbjct: 11  MDLAIRAAEEVKGSTYPNPPVGAVILDAAGQVAGVGGTRPPGQEHAEVVALAGAGAAARG 70

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG-----RGLQWLSQKGI 124
            TA VTLEPC+H GR+ PC   +   G+ RVV  V DP+ + +G     R L      G+
Sbjct: 71  GTAVVTLEPCNHQGRTGPCVDALAAAGVSRVVYAVADPNPQAAGGAARLRTLGIEVLDGL 130

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
             DR+     + +LH    +Q   R H+T K   S D         S  IT   S+  VH
Sbjct: 131 ASDRVSAGPLREWLH----KQRTGRPHVTWKYGASVDGRSAANDGTSQWITSEQSRADVH 186

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
             RA +DA+LVG GTV ADDP+LT R   N L  H P+R+++    ++S D+K++     
Sbjct: 187 RRRAFADAVLVGTGTVFADDPQLTARTPDNELVPHQPLRVVVG-MREVSSDAKVL----- 240

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
                   NDD            + +     D  ++L  L  R  T +++EGG  +A +F
Sbjct: 241 --------NDD-----------SHTMVIRTHDPAEVLAALGDR--TDIILEGGPTLAGAF 279

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLEYIGK 357
           + + LVD I+ Y + +++G G +P+ +E+  +      +R +Y      G DV L  + +
Sbjct: 280 LRAGLVDRILAYLAPMLLG-GNVPA-VEDVGVTTLSRALRWEYDQIERMGPDVLLSLVPR 337


>gi|254775815|ref|ZP_05217331.1| riboflavin biosynthesis protein RibD [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 341

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/316 (30%), Positives = 155/316 (49%), Gaps = 33/316 (10%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALEEAGEEARG 69
           M  A+  S    G T  NP V  +++     +     T   G  HAE+ AL  AG+ A G
Sbjct: 13  MRLAIEQSNQVKGNTYPNPPVGAVVLDGRGEVVGVGGTEPAGGDHAEILALRRAGDLAAG 72

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128
            T  VTLEPC+H+G++PPC   ++E G+  VV  + DP+ + +G G   L + G+ V   
Sbjct: 73  GTVVVTLEPCNHHGKTPPCVDALLEAGVSTVVYAIADPNPQAAG-GAGRLQEAGVTVRSG 131

Query: 129 -MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + +      L  +L +Q     H+T K A S D     A   S  I+  +S+  +H  R
Sbjct: 132 LLADEVSGGPLREWLHKQRTGLPHLTWKYASSVDGRSAAADGSSRWISSEVSRLDLHRRR 191

Query: 188 AQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           A +DAI+VG GTVLADDP LT RL    L +  P+R+++    ++  ++K++        
Sbjct: 192 AAADAIVVGTGTVLADDPALTARLPDGTLADRQPLRVVVG-MREIPSEAKVL-------- 242

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
                NDD              +     D  ++L  +  R  T +L+EGG  +A +F+ +
Sbjct: 243 -----NDD-----------SRTMVIRTHDPAEVLKAVSDR--TDVLLEGGPTLAGAFVRA 284

Query: 306 RLVDSIILYRSQIVIG 321
            LV+ I++Y +  ++G
Sbjct: 285 GLVNRILVYLAPTLLG 300


>gi|219557312|ref|ZP_03536388.1| putative bifunctional riboflavin biosynthesis protein RIBG:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           [Mycobacterium tuberculosis T17]
          Length = 237

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/227 (39%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE 61
           V S D   M  A+  S    G T  NP V  +IV  +G ++G G T   G  HAEV AL 
Sbjct: 6   VKSID-EAMGLAIEHSYQVKGTTYPNPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALR 64

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG  A GA   VT+EPC+HYG++PPC   +IE  +  VV  V DP+  ++G G   LS 
Sbjct: 65  RAGGLATGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADPN-GIAGGGAGRLSA 123

Query: 122 KGIIVDR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
            G+ V    + E      L  +L +Q     H+T K A S D     A   S  I+   +
Sbjct: 124 AGLQVRSGVLAEQVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAA 183

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIIL 224
           +  +H  RA +DAILVG GTVLADDP LT RL    L    P+R+++
Sbjct: 184 RLDLHRRRAIADAILVGTGTVLADDPALTARLADGSLAPQQPLRVVV 230


>gi|330814131|ref|YP_004358370.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487226|gb|AEA81631.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 355

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 118/222 (53%), Gaps = 8/222 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAG 64
           +   F   AL  +R +  +T  NPSV C++   +  ++  GVT+  G PHAE  AL +  
Sbjct: 9   YQKYFSELALSLARINKFITKENPSVGCVVTDFNNNILSSGVTSKNGRPHAENNALIKLN 68

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           ++      +VTLEPC+HYG++PPC + I+   ++++     D +  V+G GL++L +  I
Sbjct: 69  KKI-TKKIFVTLEPCNHYGKTPPCTKKIVNFNVKQLHCNQIDKNPAVNGSGLKFLKENKI 127

Query: 125 IVDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
              ++ ES   K F   Y      K  ++T K+A++++        G    T   S    
Sbjct: 128 ---KIKESNINKNFYSNYNYSVKNKLPYVTAKLAITKN--FSTVVSGKKYFTNSKSLKFA 182

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILD 225
           HLLR  +D+IL+G  T+L D P+L CR+ GL +HSP    ++
Sbjct: 183 HLLRYMNDSILIGQKTLLKDYPKLNCRIEGLSQHSPKIFFIN 224


>gi|213579885|ref|ZP_03361711.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 301

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 102/306 (33%), Positives = 151/306 (49%), Gaps = 28/306 (9%)

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
           TAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V   +
Sbjct: 1   TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAVSHGL 60

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V  LRAQ
Sbjct: 61  MMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQRLRAQ 120

Query: 190 SDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDSKIIK 238
           S AIL    TVLADDP LT R   L         QE+   P+RI++D   +++   +I++
Sbjct: 121 SHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAHRIVQ 180

Query: 239 TALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
                 +    E+     D V  ++    N ++      DL  L+  L  + + S+ VE 
Sbjct: 181 QPGETWIARTQEDSHAWPDSVRTISVPAHNGHL------DLVVLMMQLGRQQINSIWVEA 234

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349
           G  +A + + + LVD +I+Y +  ++G        +P  LE+      F      + G D
Sbjct: 235 GPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRHVGPD 293

Query: 350 VCLEYI 355
           VCL  +
Sbjct: 294 VCLHMV 299


>gi|150026064|ref|YP_001296890.1| riboflavin biosynthesis protein RibD [Flavobacterium psychrophilum
           JIP02/86]
 gi|149772605|emb|CAL44088.1| Riboflavin biosynthesis protein RibD [Flavobacterium psychrophilum
           JIP02/86]
          Length = 335

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 148/302 (49%), Gaps = 25/302 (8%)

Query: 28  NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--RGATAYVTLEPCSHYGRS 85
           NPSV  +IV +  +IG G TA  G  HAEV A+     +     +T YV+LEPCSH+G++
Sbjct: 25  NPSVGAVIVFENKIIGEGYTAAYGGNHAEVNAILSVKNKDLLAKSTIYVSLEPCSHFGKT 84

Query: 86  PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTR 144
           PPC   II+  I  VV+   D + +VSG+G++ L + G  ++  ++E+E +     + T 
Sbjct: 85  PPCCDLIIKYKIPNVVIGTVDSNSKVSGQGIKKLIEAGANVIVGILEAECRESNKRFFTF 144

Query: 145 QVEKRSHITLKIAVSQDNMIG---MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
             +KR +I LK A ++D  I          V IT   S+   H  R +  AILVG  T +
Sbjct: 145 HEKKRPYIILKWAETKDQFIAPLLKNEQKPVWITNIYSRQLAHKWRTEEQAILVGTQTAI 204

Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
            D+P L  R       +P RI+LD + ++  ++ I        VI               
Sbjct: 205 DDNPRLDVR--DWTGKNPTRIVLDKNNRIPKENHIFDIRQKTFVI--------------S 248

Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            K IN  Y +   L ++++ L    + S+++EGG     +FI++ L D   ++  Q +  
Sbjct: 249 DKTIN--YSENVAL-QIVSFLFDNNLQSVIIEGGRQTLQTFIDANLWDEARIFVGQELFS 305

Query: 322 EG 323
            G
Sbjct: 306 SG 307


>gi|103488468|ref|YP_618029.1| riboflavin biosynthesis protein RibD [Sphingopyxis alaskensis
           RB2256]
 gi|98978545|gb|ABF54696.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Sphingopyxis alaskensis RB2256]
          Length = 325

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 118/301 (39%), Positives = 153/301 (50%), Gaps = 44/301 (14%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH-YG 83
           ++ NP+V CLIVK   V+ RG T  GG PH E  AL  AG  ARGATAYVTLEPC H   
Sbjct: 26  SAPNPNVGCLIVKADQVVARGWTQAGGRPHGEAVALAAAGVAARGATAYVTLEPCVHASA 85

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYL 142
           R P C+  +I  G+ RVVV V DPD R  G G+  L   GI V   ++ ++ +  +  + 
Sbjct: 86  RGPACSDLLIRAGVARVVVAVQDPDPRTDGAGIARLRAAGIEVTVDVLPADARAAMAPWW 145

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
           TRQ   R  +TLK+A S D  I  A   S  ITG  ++   HL RA  +AILVG GT  A
Sbjct: 146 TRQTMGRPFVTLKLATSLDGRIAPADGSSRWITGDRARAHGHLERASHEAILVGRGTFEA 205

Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
           D P L  RL GL++ SP + +L         +    TA+ +P  I               
Sbjct: 206 DAPRLDVRLPGLEDRSPKKFVL-----TRGAAPEGWTAVASPDAI--------------- 245

Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
                                  GV SLLVEGGA  A +F+ +  VD ++LYR+ I+IG+
Sbjct: 246 ----------------------EGVDSLLVEGGAGAAAAFLAADRVDRLLLYRAPILIGD 283

Query: 323 G 323
           G
Sbjct: 284 G 284


>gi|294675036|ref|YP_003575652.1| riboflavin biosynthesis protein RibD [Prevotella ruminicola 23]
 gi|294472928|gb|ADE82317.1| riboflavin biosynthesis protein RibD [Prevotella ruminicola 23]
          Length = 307

 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/233 (37%), Positives = 119/233 (51%), Gaps = 8/233 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D +FM   ++ ++        NP V  +IV +G +IG G     G  HAEV A      E
Sbjct: 4   DKKFMQRCIQLAKNGQLNAKPNPMVGAVIVHNGRIIGEGYHVRCGLAHAEVNAFASVRAE 63

Query: 67  ARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                  +T YV+LEPCSHYG++PPCA  IIE G+RRVVV   D    V GRG+Q L   
Sbjct: 64  DEALLPESTIYVSLEPCSHYGKTPPCADLIIEKGVRRVVVGCIDEFAEVQGRGIQKLRDA 123

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V+  ++E E K     + T   EKR +I LK A + +  I       V I+   +K 
Sbjct: 124 GIEVEVGVLEDECKALNRRFFTFHREKRPYIILKWAQTANGFID-DHHQPVQISSDFTKM 182

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
             H LRA+ DAILVG  T   + P+L  R        P R+++D    L+L+S
Sbjct: 183 LSHKLRAEEDAILVGRVTDEREHPQLNVR--EWYGPDPKRMVIDRAHPLNLES 233


>gi|118462896|ref|YP_882551.1| riboflavin biosynthesis protein RibD [Mycobacterium avium 104]
 gi|118164183|gb|ABK65080.1| riboflavin biosynthesis protein RibD [Mycobacterium avium 104]
          Length = 341

 Score =  129 bits (325), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 154/316 (48%), Gaps = 33/316 (10%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALEEAGEEARG 69
           M  A+  S    G T  NP V  +++     +     T   G  HAE+ AL  AG+ A G
Sbjct: 13  MRLAIEQSNQVKGNTYPNPPVGAVVLDGRGEVVGVGGTEPAGGDHAEILALRRAGDLAAG 72

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128
            T  VTLEPC+H+G++PPC   ++E G+  VV  V DP+ + +G G   L + G+ V   
Sbjct: 73  GTVVVTLEPCNHHGKTPPCVDALLEAGVSTVVYAVADPNPQAAG-GAGRLQEAGVTVRSG 131

Query: 129 -MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + +      L  +L +Q     H+T K A S D     A   S  I+   S+  +H  R
Sbjct: 132 LLADEVSGGPLREWLHKQRTGLPHLTWKYASSVDGRSAAADGSSRWISSEASRLDLHRRR 191

Query: 188 AQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           A +DAI+VG GTVLADDP LT RL    L +  P+R+++    ++  ++K++        
Sbjct: 192 AAADAIVVGTGTVLADDPALTARLPDGTLADRQPLRVVVG-MREIPSEAKVL-------- 242

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
                NDD              +     D  ++L  +  R  T +L+EGG  +A +F+ +
Sbjct: 243 -----NDD-----------SRTMVIRTHDPAEVLKAVSDR--TDVLLEGGPTLAGAFVRA 284

Query: 306 RLVDSIILYRSQIVIG 321
            LV+ I++Y +  ++G
Sbjct: 285 GLVNRILVYLAPTLLG 300


>gi|225159038|ref|ZP_03725347.1| riboflavin biosynthesis protein RibD [Opitutaceae bacterium TAV2]
 gi|224802351|gb|EEG20614.1| riboflavin biosynthesis protein RibD [Opitutaceae bacterium TAV2]
          Length = 388

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 102/326 (31%), Positives = 147/326 (45%), Gaps = 16/326 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR- 68
           FM  AL  +R   G T  NP V  +IV+DG V+  G  A  G PHAE  AL   G   + 
Sbjct: 11  FMWQALALARRAWGNTHPNPMVGAIIVEDGAVVAEGWHARDGGPHAERVALTALGRAPKP 70

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GAT YVTLEPCS +GR+  C   IIE GIRRVVV   DP+   +G G   L   G+ ++ 
Sbjct: 71  GATLYVTLEPCSTHGRTGACCDAIIEAGIRRVVVGATDPNPDHAGAGYARLRAAGVEVIT 130

Query: 128 RMMESEG---KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
            + E E     +  + ++T  +     +  KIA + D  I      S  ITG  ++  VH
Sbjct: 131 GVRERECADLNLIFNQWITTGLPL---LAGKIATTLDGKIACRTGHSKWITGEAARADVH 187

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA- 243
             R    AI VG  TVLADDP LT R     E  P R + D   +     ++ +      
Sbjct: 188 RWRRLFPAIAVGAMTVLADDPRLTARPADGGEWCPWRFVFDGLLRTLGGPRLPQVYTDGH 247

Query: 244 ---PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR----GVTSLLVEGGA 296
               +++ T +         R+  + +   D    +        R     +T +  EGGA
Sbjct: 248 RERTIVVTTPHGGMGYVRKLREMGVAVWVLDAPTQRVNFADFRRRCAEEKITGVYFEGGA 307

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGE 322
            +    + SR +D +  YR+ ++  +
Sbjct: 308 QLLSELLRSRELDYLFNYRAPLLFAD 333


>gi|212275115|ref|NP_001130669.1| hypothetical protein LOC100191772 [Zea mays]
 gi|194689788|gb|ACF78978.1| unknown [Zea mays]
          Length = 392

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 158/316 (50%), Gaps = 23/316 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DA +M   +  +R   G TS NP V C+IV+DG V+G G     G PHAEV AL +AG  
Sbjct: 48  DAHYMRRCVELARKAAGHTSPNPMVGCVIVRDGRVVGEGFHPKAGQPHAEVFALRDAGNL 107

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A  ATAYV+LEPC+HYGR+PPC + +I   ++ VVV + DP+  V+ +G++ L   GI V
Sbjct: 108 AENATAYVSLEPCNHYGRTPPCTEALINAKVKEVVVGMTDPNPIVASKGIEKLQGAGISV 167

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI-GMAGCGSVPITGFISKNQVH 184
              + E+  +    AY+ R +  ++  TL+  +S + +I    G G+    G+ S+    
Sbjct: 168 RVGVEEALCRKLNEAYIHRMLTGKAFATLRATLSMNGIITNQIGKGADQSGGYYSQ---- 223

Query: 185 LLRAQSDAILVGIGTVLADDPELT-CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
            L  + D ++  I + LA    L   R  G  +  P+ II+       L    +     +
Sbjct: 224 -LMKEYDGVI--ISSDLAKMSALPLSREAGTNQ--PLCIIIAQGESSRLHIPSLSQEHAS 278

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV------EGGAA 297
             I++   D PV         + +      DL+ +L +L  RG+ S+LV      E  A+
Sbjct: 279 RAIVLA--DSPV---TVEPAGVEVAVFRQIDLESILQLLAQRGLCSVLVDFREAGESFAS 333

Query: 298 VAHSFINSRLVDSIIL 313
           + + F   +LV  +++
Sbjct: 334 LLNDFQEDKLVQKVVV 349


>gi|195640478|gb|ACG39707.1| riboflavin biosynthesis protein ribD [Zea mays]
          Length = 392

 Score =  129 bits (323), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 158/316 (50%), Gaps = 23/316 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DA +M   +  +R   G TS NP V C+IV+DG V+G G     G PHAEV AL +AG  
Sbjct: 48  DAHYMRRCVELARKAAGHTSPNPMVGCVIVRDGRVVGEGFHPKAGQPHAEVFALRDAGNL 107

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A  ATAYV+LEPC+HYGR+PPC + +I   ++ VVV + DP+  V+ +G++ L   GI V
Sbjct: 108 AENATAYVSLEPCNHYGRTPPCTEALINAKVKEVVVGMTDPNPIVASKGIEKLQGAGISV 167

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI-GMAGCGSVPITGFISKNQVH 184
              + E+  +    AY+ R +  ++  TL+  +S + +I    G G+    G+ S+    
Sbjct: 168 RVGVEEALCRKLNEAYIHRMLTGKAFATLRATLSMNGIITNQIGKGADQSGGYYSQ---- 223

Query: 185 LLRAQSDAILVGIGTVLADDPELT-CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
            L  + D ++  I + LA    L   R  G  +  P+ II+       L    +     +
Sbjct: 224 -LMKEYDGVI--ISSDLAKMSALPLSREAGTNQ--PLCIIIAQGESSRLHIPSLSQEHAS 278

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV------EGGAA 297
             I++   D PV         + +      DL+ +L +L  RG+ S+LV      E  A+
Sbjct: 279 RAIVLA--DSPV---TVEPAGVEVAVFRQIDLESILQLLAQRGLCSVLVDFREAGESFAS 333

Query: 298 VAHSFINSRLVDSIIL 313
           + + F   +LV  +++
Sbjct: 334 LLNDFQEDKLVQKVVV 349


>gi|54297135|ref|YP_123504.1| riboflavin biosynthesis protein RibD [Legionella pneumophila str.
           Paris]
 gi|53750920|emb|CAH12331.1| Riboflavin biosynthesis protein RibD [Legionella pneumophila str.
           Paris]
          Length = 357

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 150/333 (45%), Gaps = 11/333 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +F+ AAL  ++   G  + NPSV  + V++G +I +      G PHAE   L +   +  
Sbjct: 4   QFLLAALEQAKLGRGFCAPNPSVGAVAVQNGNIIAQAWHRGAGTPHAEQLLLSQIPPQTP 63

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD-VRVSGRGLQWLSQKGIIVD 127
           G T YVTLEPC+H+G++PPC   II  GI+ VV    DP+ +       + L + GI V 
Sbjct: 64  GVTLYVTLEPCNHWGKTPPCVDAIINHGIQEVVFSYFDPNPIVAKSNSSEKLREHGIQVR 123

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            +       F  +Y    +  +  +T+KIA + D  IG +    V ++  + +   H +R
Sbjct: 124 HIPIKAIDAFYKSYAYWTMTHKPRVTVKIAQTFDGKIGKSEGDRVVLSNVLCEQFTHQMR 183

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           A SD IL    TV  D+P +  RL+      P+ I+ D +  LS D+ I  TA    +  
Sbjct: 184 AASDVILTSAKTVQMDNPRMNARLDSGVVAKPVAIV-DRNLSLSDDTIIFSTAKHCHIY- 241

Query: 248 VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
                 P    A    N        +    DL  ++T L   G   + VE G A+  +  
Sbjct: 242 ----HQPQANQAKTYPNSTHYAMPLQNGLMDLDAIITHLGQLGYHDVWVEAGGAIFSALH 297

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
           +  LV    LY     +G   I +  ++G  EK
Sbjct: 298 SKGLVHRTYLYLVPGSLGHQAISAYQQQGIFEK 330


>gi|297804068|ref|XP_002869918.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
           lyrata subsp. lyrata]
 gi|297315754|gb|EFH46177.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 426

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/190 (38%), Positives = 111/190 (58%), Gaps = 7/190 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+ +M   +  ++  +G TS NP V C+IVKDG ++G+G     G PHAEV AL +AGE 
Sbjct: 74  DSFYMRKCVELAKRAIGCTSPNPMVGCVIVKDGDIVGQGFHPKAGQPHAEVFALRDAGEL 133

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A  ATAYV+LEPC+HYGR+PPC + +I+  ++RVVV + DP+  VS  G+  L   GI V
Sbjct: 134 AENATAYVSLEPCNHYGRTPPCTEALIKAKVKRVVVGMVDPNPIVSSSGISRLKDAGIDV 193

Query: 127 DRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISKNQVH 184
              +E E  K     ++ R + ++  + L+ ++S +   +   G G+    G+ SK    
Sbjct: 194 TVGVEEELCKKMNEGFIHRMLTEKPFLALRYSMSVNGCFLDKIGEGASDSGGYYSK---- 249

Query: 185 LLRAQSDAIL 194
            L  + DAI+
Sbjct: 250 -LLQEYDAII 258


>gi|281421474|ref|ZP_06252473.1| riboflavin biosynthesis protein RibD [Prevotella copri DSM 18205]
 gi|281404546|gb|EFB35226.1| riboflavin biosynthesis protein RibD [Prevotella copri DSM 18205]
          Length = 345

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 161/364 (44%), Gaps = 60/364 (16%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D  FM   L+ ++        NP V  +IV  DG +IG G     G  HAEV A      
Sbjct: 23  DEMFMRRCLQLAKNGRENAKPNPMVGAVIVSGDGRIIGEGYHVRCGEGHAEVNAFASVKP 82

Query: 66  EAR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           E       AT YV+LEPCSHYG++PPCA  I+  G++R V    DP  +V GRG++ + +
Sbjct: 83  EDEHLLSQATIYVSLEPCSHYGKTPPCADLIVRKGVKRCVCGCVDPFAKVQGRGIRKIRE 142

Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG---SVPITGF 177
            GI V   ++E+E       ++T    +R +I LK A + +  +   G G   S P T  
Sbjct: 143 AGIEVTVGVLEAECLELNKRFITFNTHQRPYIILKWAQTANGFLDNGGRGMAISSPFTKM 202

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
           +S    H LRA++DAIL+G  T   D  +L  R        PMR+++D H          
Sbjct: 203 LS----HKLRAENDAILIGRVTDERDHSQLNVR--DWSGKDPMRLVIDRHHPC------- 249

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                               L F +    +       L++++  L    V SL+VEGGA 
Sbjct: 250 -----------------FEGLDFSRGKTEV-------LQQIMQYLYNNKVQSLIVEGGAI 285

Query: 298 VAHSFINSRLVDSIILYRSQIVIG-------EGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
              +F+++ L D I   R++ ++          G P+P+    L  N   +  + +  +V
Sbjct: 286 THQAFLDAGLWDEI---RAETLLSTSVENSVTSGTPAPM----LPHNVRLISHEAYDGNV 338

Query: 351 CLEY 354
              Y
Sbjct: 339 INTY 342


>gi|297745271|emb|CBI40351.3| unnamed protein product [Vitis vinifera]
          Length = 348

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/285 (31%), Positives = 146/285 (51%), Gaps = 10/285 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M   +  +R  +G TS NP V C+IVKDG V+G G     G PH EV AL +AG+ A  A
Sbjct: 1   MRRCVELARKAIGCTSPNPMVGCVIVKDGKVVGEGFHPKAGQPHGEVFALRDAGDLAENA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           TAYV+LEPC+HYGR+PPC + +I+  +++VV+ + DP+  V+ +G+  L   GI V   +
Sbjct: 61  TAYVSLEPCNHYGRTPPCTEALIKAKVKKVVIGMVDPNPIVASKGVDRLRDAGIEVTVAV 120

Query: 131 ESE-GKIFLHAYLTRQVEKRSHITLKIAVS-QDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           E E  K    AY+ + +  +  +TL+ ++S   +++   G G     G+ S+     L  
Sbjct: 121 EEELCKKLNEAYIHQMLTGKPFVTLRYSLSINGHILDQLGEGVEEAGGYYSQ-----LVQ 175

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DAI++   TV         +  G  +  P+ I++           I  T   + VII 
Sbjct: 176 EYDAIILSPTTVTEKFSFPASQEPGANQ--PLHILIAKSPISPNQIPIPHTEATSKVIIF 233

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +N+  V      +K I  +  D  +L  +L     +G+ S+L++
Sbjct: 234 ADNETAVEP-EMVQKGIETVVLDQINLNAVLEYCKRQGLCSILLD 277


>gi|255325997|ref|ZP_05367085.1| riboflavin biosynthesis protein RibD [Rothia mucilaginosa ATCC
           25296]
 gi|255296888|gb|EET76217.1| riboflavin biosynthesis protein RibD [Rothia mucilaginosa ATCC
           25296]
          Length = 436

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/324 (31%), Positives = 152/324 (46%), Gaps = 27/324 (8%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           A  M+ AL+ +R   G+   NP V  +I    G ++  G     G PHAE  AL  A   
Sbjct: 61  AEAMTLALQAARQ--GIRGANPLVGAVITDAHGHLLHVGYHRGAGTPHAEADALAAARAA 118

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G +  GA  YV+LEPC+H GR+ PC+  + E GI  +     D D   +  G  +L  +G
Sbjct: 119 GTDLTGARMYVSLEPCNHTGRTGPCSHAVAEAGINELYYAYSD-DTENAAGGAAYLRSQG 177

Query: 124 IIVDRMMESEGKIFL--HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           + V  M E     +L    +     E+R  IT K A + D  I  A   S  ITG  ++ 
Sbjct: 178 VTVHAMEEFANASYLLNERWFIAAAERRPFITAKSASTLDGFIAAADGTSKWITGPAARI 237

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQ-EHSPMRIILDPHFKLSLDSKIIKT 239
             HL+R ++DA+++G  T L DDP L  R  NG + E  P+R+++    K  +       
Sbjct: 238 DGHLIRHRADAVMIGTRTTLMDDPTLDARDANGERFEKQPLRVVMG---KTEITENYRVR 294

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
            L  P  +     DP           N +     D ++LL  L  RGV  L++EGG  + 
Sbjct: 295 GLNPPEGVEA---DPQ----------NFLQVFTHDPRELLDELYARGVRHLMIEGGPGMV 341

Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323
             F    L+D ++ YR+ +++G+G
Sbjct: 342 GLFAGEDLIDEMVWYRAPMIMGQG 365


>gi|323343508|ref|ZP_08083735.1| riboflavin biosynthesis protein RibD [Prevotella oralis ATCC 33269]
 gi|323095327|gb|EFZ37901.1| riboflavin biosynthesis protein RibD [Prevotella oralis ATCC 33269]
          Length = 321

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/352 (30%), Positives = 160/352 (45%), Gaps = 64/352 (18%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ---ALEEA 63
           D R+M   ++ +   +     NP V  L+  +G +IG G     G  HAEV    +++ A
Sbjct: 17  DIRYMRRCIQLALNGMQNAKPNPMVGALLACEGRIIGEGYHIRFGEGHAEVNCFASVKPA 76

Query: 64  GEEA-RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
            E     +T YV+LEPCSHYG++PPCA  II  G+RRVVV   DP  +V GRG+  L + 
Sbjct: 77  DEHLLPQSTLYVSLEPCSHYGKTPPCADLIIRNGVRRVVVGCIDPFAQVHGRGIHKLREA 136

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG---MAGCGSVPITGFI 178
           GI +V  ++E E       ++T     R +I LK A + +  I     A   S P T  +
Sbjct: 137 GIEVVVGVLERECLALNKRFITYNTRLRPYIILKWAQTSNGFIDDCFHALSISTPFTKML 196

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           S    H LR +SDAILVG  T   + P L  R        P+RI+LD             
Sbjct: 197 S----HKLRVESDAILVGRVTDEREHPMLNVR--HWSGRDPLRIVLD------------- 237

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
                                  ++NI            L+T L  + V SL+VEGGA  
Sbjct: 238 ----------------------HRQNI----------ADLMTSLYEKKVQSLIVEGGAKT 265

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
             SF+ + L D I +  + + + +GG P+P     +  +   +R+D +  ++
Sbjct: 266 LQSFLTAGLWDEIRVETAPLTV-KGGTPAP----RIPTDIRLIRQDIYDGNI 312


>gi|54294122|ref|YP_126537.1| riboflavin biosynthesis protein RibD [Legionella pneumophila str.
           Lens]
 gi|53753954|emb|CAH15425.1| Riboflavin biosynthesis protein RibD [Legionella pneumophila str.
           Lens]
          Length = 357

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 153/336 (45%), Gaps = 17/336 (5%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +F+ AAL  ++   G  + NPSV  + V++G +I +      G PHAE   L +   +  
Sbjct: 4   QFLLAALEQAKLGRGFCAPNPSVGAVAVQNGNIIAQAWHRGAGTPHAEQLLLSQILPQTP 63

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD-VRVSGRGLQWLSQKGIIVD 127
           G T YVTLEPC+H+G++PPC   II  GI  VV    DP+ +       + L + GI V 
Sbjct: 64  GVTLYVTLEPCNHWGKTPPCVDAIINHGIEEVVFSYFDPNPIVAKSNSSEKLREHGIQVR 123

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            +      +F  +Y    +  +  +T+KIA + D  IG +    V ++  + +   H +R
Sbjct: 124 HIPIKAIDVFYKSYAYWTMTHKPRVTVKIAQTFDGKIGKSEGARVVLSNSLCEQFTHQMR 183

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI- 246
           A SD IL    TV  D+P +  RL+      P+ I+ D +  LS D+ I  TA    +  
Sbjct: 184 AASDVILTSAKTVQMDNPRMNARLDTGLVAKPVAIV-DRNLSLSDDTIIFSTAKHCHIYH 242

Query: 247 ------IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
                   T  +    A+  +   +N        L+ ++T L   G   + VE G A+  
Sbjct: 243 QPQANQAKTYPNSTHYAMPLQNGLMN--------LEAIITHLGQLGYHDVWVEAGGAIFS 294

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
           +  +  LV    LY     +G   I +  ++G  EK
Sbjct: 295 ALHSKGLVHRTYLYLVPGSLGHQAISAYQQQGIFEK 330


>gi|218191968|gb|EEC74395.1| hypothetical protein OsI_09744 [Oryza sativa Indica Group]
          Length = 396

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 164/319 (51%), Gaps = 22/319 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D  +M   +  +R   G TS NP V C++V+DG V+G G     G PHAEV AL +A
Sbjct: 48  SDMDGHYMRRCVELARKAAGHTSPNPMVGCVVVRDGRVVGEGFHPKAGQPHAEVFALRDA 107

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G+ A  ATAYV+LEPC+HYGR+PPC + +I   ++ VVV + DP+  V+ +G++ L   G
Sbjct: 108 GDLAENATAYVSLEPCNHYGRTPPCTEALINAKVKDVVVGMTDPNPIVASKGIERLRSAG 167

Query: 124 IIVDRMMESEG--KIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISK 180
           I V   ++ E   +    AY+ R +  ++  TL+  +S +  +I   G G+    G+ S+
Sbjct: 168 IDVRLCVDEEASCRKLNEAYIHRMLTGKAFATLRTTLSMNGVVINQIGSGADQPEGYYSQ 227

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
                L  + D +++       +   ++      Q   P+ II+       L+   +K  
Sbjct: 228 -----LLKEYDGVIISSNFAKTNTLPVSREAGAKQ---PLYIIIAQGENSQLNIPFLKEE 279

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE------G 294
             A  ++++  D P+         ++++  D  +L  +L +L  RG+ S+LV+      G
Sbjct: 280 RAAEAVVLS--DSPI---TVEPAGVDVLVLDQMNLDAILQLLAQRGLCSVLVDFREAGGG 334

Query: 295 GAAVAHSFINSRLVDSIIL 313
            A++ ++F + +LV  +++
Sbjct: 335 IASLLNNFQDDKLVQKVVV 353


>gi|317484774|ref|ZP_07943673.1| riboflavin biosynthesis protein RibD [Bilophila wadsworthia 3_1_6]
 gi|316923981|gb|EFV45168.1| riboflavin biosynthesis protein RibD [Bilophila wadsworthia 3_1_6]
          Length = 379

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 184/386 (47%), Gaps = 36/386 (9%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQAL 60
           P  SF       A R  RW     + NP+V  ++V+DG+ + RG  TAYG   HAEV+ L
Sbjct: 4   PYESFMREAAELAER-GRWSA---APNPTVGAVLVRDGVAVARGWHTAYGKS-HAEVECL 58

Query: 61  EEAGEEARGA-----TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           ++A  EA+G      T  VTLEPC+H G++PPC + +I  GIR VV+ + DP+ + +G G
Sbjct: 59  KDA--EAKGVDPSACTLVVTLEPCNHQGQTPPCTEAVIAAGIRHVVIGLRDPNPKAAG-G 115

Query: 116 LQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           ++ L++ G+ V+  + E   +  +  +L  Q  KR ++ LK+A++ D  I      S  I
Sbjct: 116 MERLAEAGVEVEAGVCEELCRDLVADFLIWQTTKRPYVMLKLAMTLDGRIATRTGHSRWI 175

Query: 175 TGFISKNQVHLLRAQ----SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL 230
           TG  ++ QVH LRA       AILVG  T+  D+P LT RL+   E  P+ + +      
Sbjct: 176 TGETARRQVHELRANVGRAGGAILVGGNTLHTDNPLLTARLDDPVERQPLAVSISSRVPA 235

Query: 231 SLDSKIIKTALLAPVIIVTENDDPV-LALAFRKKNINIIYCD----CRDLKKLLTILVGR 285
                + K      +   T +      A   R++ + I   D      DL ++L  L   
Sbjct: 236 PDSLLLFKERPTETIFFTTASGAATPRAAQLRERGVRIRGLDRWKSGEDLVQILEYLRQE 295

Query: 286 -GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG--------EGGIPSPLEEGYLEK 336
            G   +L EGG  +  S + + LVD   L+ +  V+G        +G  P  L+E     
Sbjct: 296 AGCPYVLCEGGGRLGLSLLEAGLVDEFHLHIAPKVLGDNDARPLFDGRTPLELDEAL--- 352

Query: 337 NFMCVRRDYFGSDVCLEYIGKNLCLQ 362
           +   VR +  G D  L +     C Q
Sbjct: 353 SLRLVRMEPCGEDGHLIFRPVRACSQ 378


>gi|38233905|ref|NP_939672.1| putative riboflavin biosynthesis protein [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200166|emb|CAE49847.1| Putative riboflavin biosynthesis protein [Corynebacterium
           diphtheriae]
          Length = 334

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 148/307 (48%), Gaps = 41/307 (13%)

Query: 23  GLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G T  NP V  +++  +G ++GRG T   G  HAE+ AL +AGE  +G T  VTLEPC+H
Sbjct: 20  GTTHPNPPVGAVVLSSNGSIVGRGHTQPPGGSHAEIMALRQAGENTKGGTLVVTLEPCNH 79

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
           +GR+ PC+  I E GI  VV  + D      G G ++L ++G+ V  +      + + A 
Sbjct: 80  WGRTGPCSHAISESGIEHVVYLMQDTGSLEKG-GAEYLRRQGLKVTFL-----GLSVAAL 133

Query: 142 LTRQVEK---RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIG 198
           +  Q  K     ++  K A + D  +      S  ITG  S++  +  R   DAI+VG G
Sbjct: 134 IPWQASKDRGWPYVVGKTAHTLDGFVAAEDHSSKWITGSASRDYANRQRRHFDAIIVGTG 193

Query: 199 TVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
           TV AD+P LT R +   L  H P+++++    K+S  +++ ++                 
Sbjct: 194 TVKADNPALTARKDDGTLLPHQPLKVVIGTS-KISEGTQLARSG---------------- 236

Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
                       +     +++ L  L  RGV  +LVEGG  + H F+ S  +D +  Y +
Sbjct: 237 ------------FVQFSTIEEALVQLWDRGVRYVLVEGGPHLLHGFLTSGNLDQLHSYSA 284

Query: 317 QIVIGEG 323
            +++  G
Sbjct: 285 PMLLTRG 291


>gi|41407234|ref|NP_960070.1| RibG [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395585|gb|AAS03453.1| RibG [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 341

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/316 (30%), Positives = 152/316 (48%), Gaps = 33/316 (10%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALEEAGEEARG 69
           M  A+  S    G T  NP V  +++     +     T   G  HAE+ AL  AG+ A G
Sbjct: 13  MHLAIEQSNQVKGNTYPNPPVGAVVLDGRGEVVGVGGTEPAGGDHAEILALRRAGDLAAG 72

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128
            T  VTLEPC+H+G++PPC   ++E G+  VV  V DP+ + +G G   L + G+ V   
Sbjct: 73  GTVVVTLEPCNHHGKTPPCVDALLEAGVGTVVYAVADPNPQAAG-GAGRLQEAGVTVRSG 131

Query: 129 -MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + +      L  +L +Q     H+T K A S D     A   S  I+   S+  +H  R
Sbjct: 132 LLADEVSGGPLREWLHKQRTGLPHLTWKYASSVDGRSAAADGSSRWISSEASRLDLHRRR 191

Query: 188 AQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           A +DAI+VG GTVLADDP LT RL    L +  P+R+++     LS ++K++        
Sbjct: 192 AAADAIVVGTGTVLADDPALTARLPDGTLADRQPLRVVVGMREILS-EAKVL-------- 242

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
                            +    +     D  ++L  +  R  T +L+EGG  +A +F+ +
Sbjct: 243 ----------------NEESRTMVIRTHDPAEVLKAVSDR--TDVLLEGGPTLAGAFVRA 284

Query: 306 RLVDSIILYRSQIVIG 321
            LV+ I++Y +  ++G
Sbjct: 285 GLVNRILVYLAPTLLG 300


>gi|317154507|ref|YP_004122555.1| riboflavin biosynthesis protein RibD [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944758|gb|ADU63809.1| riboflavin biosynthesis protein RibD [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 377

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 155/330 (46%), Gaps = 14/330 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
           M+ A+  +R   G  + NP V  ++V    ++  G     G  HAE + L +A   G   
Sbjct: 14  MARAIELARLGRGAVAPNPCVGAVLVDGDRIVAEGWHMRYGGLHAERECLVDARSKGVTP 73

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           RG T +VTLEPC+H+G++PPC Q +IE G+ RVVV   DP+   +G G++ L+  GI V+
Sbjct: 74  RGLTMFVTLEPCNHHGKTPPCTQALIEEGVARVVVGTRDPNPVAAG-GIERLTAAGIEVE 132

Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
              +ESE +  +  +L  Q    +   +K+A + D  I        P++   S  +VH L
Sbjct: 133 VGALESECRDLIADFLVWQNSHSTFNIIKMAATLDGKIASRLRRPEPVSCAESFARVHAL 192

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKTALLAP 244
           R++ DAI+VG  T  ADDP LTCRL  L +    P  +++           ++       
Sbjct: 193 RSRVDAIIVGGSTFRADDPSLTCRLTTLPDGFVQPYGVVITSRLPDDPARHVLTRTRPER 252

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-------RGVTSLLVEGGAA 297
            I +T +       A R +               L + +G        G  + L EGG  
Sbjct: 253 TIFMTTDTSARSQEADRLREGGTSVWPLPGPPGGLNLSLGLERLRYDLGCHTTLCEGGGQ 312

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           +A  F+   L D I+ + +  ++G+ G PS
Sbjct: 313 LAMQFVGQGLGDEIVHFVAPRILGDEGAPS 342


>gi|307609932|emb|CBW99459.1| riboflavin biosynthesis protein RibD [Legionella pneumophila 130b]
          Length = 357

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 153/336 (45%), Gaps = 17/336 (5%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +F+ AAL  ++   G  + NPSV  + V++G +I +      G PHAE   L +   +  
Sbjct: 4   QFLLAALEQAKLGRGFCAPNPSVGAVAVQNGNIIAQAWHRGAGTPHAEQLLLSQILPQTP 63

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD-VRVSGRGLQWLSQKGIIVD 127
           G T YVTLEPC+H+G++PPC   II  GI  VV    DP+ +       + L + GI V 
Sbjct: 64  GVTLYVTLEPCNHWGKTPPCVDAIINHGIEEVVFSYFDPNPIVAKSNSSEKLREHGIQVR 123

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            +      +F  +Y    +  +  +T+K+A + D  IG +    V ++  + +   H +R
Sbjct: 124 HIPIKAIDVFYKSYAYWTMTHKPRVTVKMAQTFDGKIGKSEGARVVLSNALCEQFTHQMR 183

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI- 246
           A SD IL    TV  D+P +  RL+      P+ I+ D +  LS D+ I  TA    +  
Sbjct: 184 AASDVILTSAKTVQMDNPRMNARLDSGLVAKPVAIV-DRNLSLSDDTIIFSTAKHCHIYH 242

Query: 247 ------IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
                   T  +    A+  +   +N        L+ ++T L   G   + VE G A+  
Sbjct: 243 QPQANQAKTYPNSTHYAMPLQNGLMN--------LEAIITHLGQLGYHDVWVEAGGAIFS 294

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
           +  +  LV    LY     +G   I +  ++G  EK
Sbjct: 295 ALHSKGLVHRTYLYLVPGSLGHQAISAYQQQGIFEK 330


>gi|222624084|gb|EEE58216.1| hypothetical protein OsJ_09181 [Oryza sativa Japonica Group]
          Length = 396

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 164/319 (51%), Gaps = 22/319 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D  +M   +  +R   G TS NP V C++V+DG V+G G     G PHAEV AL +A
Sbjct: 48  SDMDGHYMRRCVELARKAAGHTSPNPMVGCVVVRDGRVVGEGFHPKAGQPHAEVFALRDA 107

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G+ A  ATAYV+LEPC+HYGR+PPC + +I   ++ VVV + DP+  V+ +G++ L   G
Sbjct: 108 GDLAENATAYVSLEPCNHYGRTPPCTEALINAKVKDVVVGMTDPNPIVASKGIERLRSAG 167

Query: 124 IIVDRMMESEG--KIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISK 180
           I V   ++ E   +    AY+ R +  ++  TL+  +S +  +I   G G+    G+ S+
Sbjct: 168 IDVRLCVDEEASCRKLNEAYIHRMLTGKAFATLRTTLSMNGVVINQIGSGADQPEGYYSQ 227

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
                L  + D +++       +   ++      Q   P+ II+       L+   +K  
Sbjct: 228 -----LLKEYDGVIISSNFAKTNTLPVSREAGAKQ---PLYIIIAQCENSQLNIPFLKEE 279

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE------G 294
             A  ++++  D P+         ++++  D  +L  +L +L  RG+ S+LV+      G
Sbjct: 280 RAAEAVVLS--DSPI---TVEPAGVDVLVLDQMNLDAILQLLAQRGLCSVLVDFREAGGG 334

Query: 295 GAAVAHSFINSRLVDSIIL 313
            A++ ++F + +LV  +++
Sbjct: 335 IASLLNNFQDDKLVQKVVV 353


>gi|115450331|ref|NP_001048766.1| Os03g0117200 [Oryza sativa Japonica Group]
 gi|108705865|gb|ABF93660.1| riboflavin biosynthesis protein RibD containing protein, expressed
           [Oryza sativa Japonica Group]
 gi|113547237|dbj|BAF10680.1| Os03g0117200 [Oryza sativa Japonica Group]
 gi|215687333|dbj|BAG91867.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 423

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 164/319 (51%), Gaps = 22/319 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D  +M   +  +R   G TS NP V C++V+DG V+G G     G PHAEV AL +A
Sbjct: 75  SDMDGHYMRRCVELARKAAGHTSPNPMVGCVVVRDGRVVGEGFHPKAGQPHAEVFALRDA 134

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G+ A  ATAYV+LEPC+HYGR+PPC + +I   ++ VVV + DP+  V+ +G++ L   G
Sbjct: 135 GDLAENATAYVSLEPCNHYGRTPPCTEALINAKVKDVVVGMTDPNPIVASKGIERLRSAG 194

Query: 124 IIVDRMMESEG--KIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISK 180
           I V   ++ E   +    AY+ R +  ++  TL+  +S +  +I   G G+    G+ S+
Sbjct: 195 IDVRLCVDEEASCRKLNEAYIHRMLTGKAFATLRTTLSMNGVVINQIGSGADQPEGYYSQ 254

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
                L  + D +++       +   ++      Q   P+ II+       L+   +K  
Sbjct: 255 -----LLKEYDGVIISSNFAKTNTLPVSREAGAKQ---PLYIIIAQCENSQLNIPFLKEE 306

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE------G 294
             A  ++++  D P+         ++++  D  +L  +L +L  RG+ S+LV+      G
Sbjct: 307 RAAEAVVLS--DSPI---TVEPAGVDVLVLDQMNLDAILQLLAQRGLCSVLVDFREAGGG 361

Query: 295 GAAVAHSFINSRLVDSIIL 313
            A++ ++F + +LV  +++
Sbjct: 362 IASLLNNFQDDKLVQKVVV 380


>gi|21618159|gb|AAM67209.1| probable riboflavin biosynthesis related protein [Arabidopsis
           thaliana]
          Length = 426

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/190 (37%), Positives = 110/190 (57%), Gaps = 7/190 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+ +M   +  ++  +G TS NP V C+IVKDG ++G+G     G PHAEV AL +AGE 
Sbjct: 74  DSFYMRKCVELAKRAIGCTSPNPMVGCVIVKDGDIVGQGFHPKAGQPHAEVFALRDAGEL 133

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A  ATAYV+LEPC+HYGR+PPC + +I+  +RRVV+ + DP+  V   G+  L   GI V
Sbjct: 134 AENATAYVSLEPCNHYGRTPPCTEALIKAKVRRVVIGMVDPNPIVFSSGISRLKDAGIDV 193

Query: 127 DRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISKNQVH 184
              +E E  K     ++ R +  +  + L+ ++S +  ++   G G+    G+ SK    
Sbjct: 194 TVSVEEELCKKMNEGFIHRMLTGKPFLALRYSMSVNGCLLDKIGQGASDSGGYYSK---- 249

Query: 185 LLRAQSDAIL 194
            L  + DAI+
Sbjct: 250 -LLQEYDAII 258


>gi|18415600|ref|NP_567618.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
           thaliana]
 gi|26452452|dbj|BAC43311.1| unknown protein [Arabidopsis thaliana]
 gi|29824151|gb|AAP04036.1| unknown protein [Arabidopsis thaliana]
 gi|332658979|gb|AEE84379.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Arabidopsis thaliana]
          Length = 426

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/190 (37%), Positives = 110/190 (57%), Gaps = 7/190 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+ +M   +  ++  +G TS NP V C+IVKDG ++G+G     G PHAEV AL +AGE 
Sbjct: 74  DSFYMRKCVELAKRAIGCTSPNPMVGCVIVKDGDIVGQGFHPKAGQPHAEVFALRDAGEL 133

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A  ATAYV+LEPC+HYGR+PPC + +I+  +RRVV+ + DP+  V   G+  L   GI V
Sbjct: 134 AENATAYVSLEPCNHYGRTPPCTEALIKAKVRRVVIGMVDPNPIVFSSGISRLKDAGIDV 193

Query: 127 DRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISKNQVH 184
              +E E  K     ++ R +  +  + L+ ++S +  ++   G G+    G+ SK    
Sbjct: 194 TVSVEEELCKKMNEGFIHRMLTGKPFLALRYSMSVNGCLLDKIGQGASDSGGYYSK---- 249

Query: 185 LLRAQSDAIL 194
            L  + DAI+
Sbjct: 250 -LLQEYDAII 258


>gi|257067228|ref|YP_003153483.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Brachybacterium faecium DSM 4810]
 gi|256558046|gb|ACU83893.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Brachybacterium faecium DSM 4810]
          Length = 355

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 103/307 (33%), Positives = 142/307 (46%), Gaps = 39/307 (12%)

Query: 28  NPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYG 83
           NP V C+++  DG ++  G     G  HAE  AL  A   G    GATA VTLEPC+H G
Sbjct: 27  NPRVGCVLLGADGAMLAEGHHRGAGTAHAEADALARARSLGIPLTGATAVVTLEPCAHTG 86

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT 143
           R+ PCA+ ++E GI RVV+   DP+   SG G+  L   GI V+ +   E      A L 
Sbjct: 87  RTGPCAEALLEAGIGRVVIARTDPNPVASG-GIDRLRAAGIDVE-LDVPEALAAAAAALN 144

Query: 144 RQVE-----KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIG 198
           R  E      R  +T K A++ D     A   S  ITG  ++ +VHLLR   D +LVG G
Sbjct: 145 RGWEHGLRHSRPLVTAKTALTLDGRAAAADGTSQWITGPAAREEVHLLRTTCDTVLVGTG 204

Query: 199 TVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
           T   D P LT R     L    P+R ++         S +       P +   E     +
Sbjct: 205 TARIDQPTLTARRPDGALHPRQPLRAVMG-------TSAV-------PTLPAVEGAGQQV 250

Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
            LA             RD    L  L  RG   +L+EGG  +  +F+ + LVD +IL+ +
Sbjct: 251 RLA------------TRDPSAALAELFARGARHVLLEGGPTLTAAFLRAGLVDELILHLA 298

Query: 317 QIVIGEG 323
             ++G G
Sbjct: 299 PTLLGAG 305


>gi|254822405|ref|ZP_05227406.1| riboflavin biosynthesis protein RibD [Mycobacterium intracellulare
           ATCC 13950]
          Length = 341

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 104/325 (32%), Positives = 156/325 (48%), Gaps = 34/325 (10%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQAL 60
           P    DA  M  A+  S    G T  NP V  +I+   G V+G G T   G  HAE+ AL
Sbjct: 5   PGDGLDA-AMRLAIEQSTLVKGTTYPNPPVGAVILDAGGEVVGVGGTEPAGGDHAEILAL 63

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AG+ A G T  VTLEPC+HYG++PPC   +++  +  VV  V DP+ + +G G   L 
Sbjct: 64  RRAGDLAAGGTVVVTLEPCNHYGKTPPCVNALLDANVATVVYAVADPNPQAAG-GAARLE 122

Query: 121 QKGIIVDR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
           + G+ V    + +   +  L  +L +Q     H+T K A S D     A   S  I+   
Sbjct: 123 EAGVAVRSGVLADEVARGPLREWLHKQRTGLPHLTWKYASSVDGRSAAADGSSQWISSEA 182

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKI 236
           S+  +H  R   DAI+VG GTVLADDP LT RL    L    P+R+++    ++  ++K+
Sbjct: 183 SRLDLHRRRGACDAIVVGTGTVLADDPALTARLPDGSLAARQPLRVVVG-MREIPSEAKV 241

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
           +             NDD              +     D  ++L  +  R  T +L+EGG 
Sbjct: 242 L-------------NDDS-----------RTMLIRTHDPAEVLKAVSDR--TDVLLEGGP 275

Query: 297 AVAHSFINSRLVDSIILYRSQIVIG 321
            +A +F+ +  VD I+ Y +  ++G
Sbjct: 276 TLAGAFLRAGAVDRILAYVAPTLLG 300


>gi|296170729|ref|ZP_06852302.1| riboflavin biosynthesis protein RibD [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894612|gb|EFG74348.1| riboflavin biosynthesis protein RibD [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 340

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 107/337 (31%), Positives = 165/337 (48%), Gaps = 58/337 (17%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQAL 60
           P    DA  M  A+  S+   G T  NP V  +++   G+V+G G T   G  HAEV AL
Sbjct: 4   PAHGLDA-AMRLAIEQSKQVKGTTYPNPPVGAVVLDAGGVVVGVGGTEPAGGDHAEVLAL 62

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD------------ 108
             AG+ A G TA VTLEPC+H+GR+PPC   ++E  +  VV  V DP+            
Sbjct: 63  RRAGDLAAGGTAVVTLEPCNHHGRTPPCVNALLEAKVATVVYAVADPNPAAAGGAARLAE 122

Query: 109 --VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM 166
             V+V+G         G++ D +     + +LH    +Q     H+T K A S D     
Sbjct: 123 AGVQVTG---------GVLADEVAGGPLREWLH----KQRTGSPHVTWKYASSVDGRSAA 169

Query: 167 AGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIIL 224
           A   S  I+   S+  +H  RA +DAI+VG GTVLADDP LT RL    L    P+R+++
Sbjct: 170 ADGTSQWISSEASRLDLHRRRATADAIVVGTGTVLADDPTLTARLPDGSLAARQPLRVVV 229

Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
               ++  ++K++             NDD         + + I   D  ++ K L+    
Sbjct: 230 G-MREIPSEAKVL-------------NDD--------SRTMVIRTHDPMEVIKALS---- 263

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
              T +L+EGG  +A +F+ + +V+ I++Y + +++G
Sbjct: 264 -DRTDVLLEGGPTLAGAFLRAGVVNRILVYVAPMLLG 299


>gi|300858536|ref|YP_003783519.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Corynebacterium pseudotuberculosis FRC41]
 gi|300685990|gb|ADK28912.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302206248|gb|ADL10590.1| Riboflavin biosynthesis protein ribD [Corynebacterium
           pseudotuberculosis C231]
 gi|302330806|gb|ADL21000.1| Riboflavin biosynthesis protein ribD [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276490|gb|ADO26389.1| Riboflavin biosynthesis protein ribD [Corynebacterium
           pseudotuberculosis I19]
          Length = 373

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 100/304 (32%), Positives = 144/304 (47%), Gaps = 35/304 (11%)

Query: 23  GLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G TS NP V   IV   G ++G G T   G PHAEV AL+ AG  ARGAT  VTLEPC H
Sbjct: 64  GSTSPNPPVGAAIVSAQGDIVGVGYTQPVGGPHAEVMALQSAGGAARGATIVVTLEPCQH 123

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
            GR+ PC Q +++ GI  VV C+ DP  R  G G ++L + G+ V   ++   +  L  +
Sbjct: 124 QGRTGPCTQALLDAGIAEVVYCLKDPG-RKEGGGHEFLQKNGVRVT-FLDVPVRA-LRPW 180

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
           L  Q  +R ++  K A + D  I      S  IT  ++++     R   DAI+VG GT L
Sbjct: 181 LQAQKLQRPYVVGKSAHTVDGFIAAVDGTSQWITSEVARSYAISQRKLFDAIVVGTGTAL 240

Query: 202 ADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
           AD+P LT R    +E    P+R+++           + + A L+         DP +   
Sbjct: 241 ADNPRLTARGPKGEETPWQPLRVVIG-------SRALPENAHLS---------DPTV--- 281

Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
                         DL   L  L  +G   +L+EGGA +  S     ++D    Y + + 
Sbjct: 282 ----------VKFLDLVVALRYLWDKGCRYVLLEGGAGLITSAFERDIIDEFHDYSAPLF 331

Query: 320 IGEG 323
           +G G
Sbjct: 332 LGSG 335


>gi|300741401|ref|ZP_07071422.1| riboflavin biosynthesis protein RibD [Rothia dentocariosa M567]
 gi|300380586|gb|EFJ77148.1| riboflavin biosynthesis protein RibD [Rothia dentocariosa M567]
          Length = 374

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 152/329 (46%), Gaps = 40/329 (12%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA-- 63
           D R MS A+  +R   G+   NP V  +I    G V+  G     G PHAE  AL +A  
Sbjct: 3   DDRAMSLAIEAAR--QGIRGANPLVGAVITNSAGQVLHIGWHRGAGTPHAEADALAQARA 60

Query: 64  -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
            G +   A  YV+LEPC+H G++ PC+  I E GI +V     D   + SG G ++L   
Sbjct: 61  AGTDMSDAKMYVSLEPCNHTGKTGPCSHAIKEAGISQVFYAYPDRSAQASG-GAEYLRSH 119

Query: 123 GIIVDRMME--SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           GI+   M E   +       +     EKR  IT+K A + D  I  A   S  ITG  ++
Sbjct: 120 GIVTTYMREFADDSYALNERWFISVAEKRPFITVKSASTLDGFIAAADGTSKWITGSQAR 179

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQ-EHSPMRIILDPHFKLSLDSKIIK 238
              HL+R ++DA+++G  T L D+P L  R ++G + +  P+R+++              
Sbjct: 180 ADGHLIRKRADAVMIGTRTTLLDNPSLDARDISGQRYKKQPLRVVMG------------- 226

Query: 239 TALLAPVIIVTENDDP----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
                      E D P    V  L  R    N +     + + LL  L  RGV  L++EG
Sbjct: 227 -----------ETDIPSTYKVCGLGTRDPE-NYMQVYTHEPRVLLDELYSRGVRHLMIEG 274

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           G  +   F    L+D ++ YR+ I++G G
Sbjct: 275 GPGMVGLFTGEDLLDELVWYRAPILMGHG 303


>gi|119961067|ref|YP_947578.1| riboflavin biosynthesis protein RibD [Arthrobacter aurescens TC1]
 gi|119947926|gb|ABM06837.1| riboflavin biosynthesis protein RibD [Arthrobacter aurescens TC1]
          Length = 373

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 111/327 (33%), Positives = 157/327 (48%), Gaps = 35/327 (10%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62
           ++ ++  M AAL  +    G    NP V  +I+  DG  +  G     G  HAE  A+ E
Sbjct: 9   TAAESEAMDAALTAAL--AGPRGANPLVGAVILSPDGEQLATGYHRGAGTAHAEADAISE 66

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G +  G T  VTLEPC+H GR+ PCAQ II  GI +V+  VDDP    +G G + L
Sbjct: 67  ARKKGIDIVGTTMVVTLEPCNHVGRTGPCAQAIIAAGIAKVIYAVDDPHDPAAG-GARTL 125

Query: 120 SQKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
           S  G+ V   +E E  + L+  +      KR  +TL IA + D+ I      S  I+   
Sbjct: 126 SAAGVEVISGLEGEKALDLNRDWFDAVAAKRPFVTLHIAQTLDSRIAAVDGTSQWISCPE 185

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKI 236
           S    H LR   DAILVG GTVL DDP LT R     L  H P+R ++            
Sbjct: 186 SLADNHGLRGLIDAILVGTGTVLVDDPRLTARTPDGELSAHQPIRAVM------------ 233

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
                          D P  A A R  +   ++   RD  + L +L  +GV  L+VEGG+
Sbjct: 234 ------------GLRDVPQDA-AVRGNDGRFVHLPTRDPAEALGMLFEKGVRHLMVEGGS 280

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
           ++  +F+ + LVD +I+Y +  ++G G
Sbjct: 281 SILSTFLAADLVDELIVYLAPTLLGSG 307


>gi|5262786|emb|CAB45891.1| putative protein [Arabidopsis thaliana]
 gi|7268893|emb|CAB79096.1| putative protein [Arabidopsis thaliana]
 gi|45268463|gb|AAS55854.1| pyrimidine deaminase [synthetic construct]
          Length = 363

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/190 (37%), Positives = 110/190 (57%), Gaps = 7/190 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+ +M   +  ++  +G TS NP V C+IVKDG ++G+G     G PHAEV AL +AGE 
Sbjct: 11  DSFYMRKCVELAKRAIGCTSPNPMVGCVIVKDGDIVGQGFHPKAGQPHAEVFALRDAGEL 70

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A  ATAYV+LEPC+HYGR+PPC + +I+  +RRVV+ + DP+  V   G+  L   GI V
Sbjct: 71  AENATAYVSLEPCNHYGRTPPCTEALIKAKVRRVVIGMVDPNPIVFSSGISRLKDAGIDV 130

Query: 127 DRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISKNQVH 184
              +E E  K     ++ R +  +  + L+ ++S +  ++   G G+    G+ SK    
Sbjct: 131 TVSVEEELCKKMNEGFIHRMLTGKPFLALRYSMSVNGCLLDKIGQGASDSGGYYSK---- 186

Query: 185 LLRAQSDAIL 194
            L  + DAI+
Sbjct: 187 -LLQEYDAII 195


>gi|224144951|ref|XP_002325472.1| predicted protein [Populus trichocarpa]
 gi|222862347|gb|EEE99853.1| predicted protein [Populus trichocarpa]
          Length = 592

 Score =  126 bits (316), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 105/370 (28%), Positives = 181/370 (48%), Gaps = 21/370 (5%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S DA ++  A + +    G +S +P+  C+I    GIV G G     G   AEV A+E A
Sbjct: 33  SLDAAYIKRAAQIADNSAGFSSPHPNFGCVIATTSGIVAGEGYLYAQGTKAAEVLAVEAA 92

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G  ++G+TAY+ +EP   +G     +  +++ GI RVVV +  P   + G  ++ L  +G
Sbjct: 93  GGFSKGSTAYLNMEPGDCHGDQSAVSA-LVQAGITRVVVGIRHPLQHLHGNAIRSLRGQG 151

Query: 124 IIVD--------RMMESEGK--IFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSV 172
           + VD        ++ME   K  + ++A L  R   +     LK A++ D  I      + 
Sbjct: 152 LQVDVVGEDLKSKIMEEARKSCLLVNAPLIHRATSQVPFSVLKYAMTLDGKIATTSGHAT 211

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
            I+   S+N+V  LR +SDAI+VG  TV  D+P LT R  G   H+P+RI++   F L  
Sbjct: 212 WISSKKSRNRVFELRGRSDAIIVGGNTVRKDNPRLTARHGG--GHTPIRIVMTQTFNLPE 269

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
           ++ +   + ++ +++               K + ++  D  + ++++     RG  S+L 
Sbjct: 270 EANLWDISDVSTIVVTQRGARRSFQKLLASKGVEVVEFDILNPREVMEYFHDRGYLSILW 329

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-GYLEKNFMCVRRDYFGSDVC 351
           E G  +A S I+S ++  +  + +  +IG    PSP+ E G +E   M    D    DVC
Sbjct: 330 ECGGTLAASAISSGVIHKVFAFVAPKIIGGKNAPSPVGELGMVE---MSQALDLI--DVC 384

Query: 352 LEYIGKNLCL 361
            E +G ++ +
Sbjct: 385 FEQVGPDMLI 394


>gi|168057508|ref|XP_001780756.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162667774|gb|EDQ54395.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 598

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 175/376 (46%), Gaps = 24/376 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           SS D+R +  A   +    GL++ +P+  C+I     V+G G     G   AEVQA+E A
Sbjct: 22  SSDDSRHLLRAAELAGSLAGLSAPHPNFGCVIAHGPKVVGEGFLYAQGTKSAEVQAVERA 81

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+ ATAY+ LEP   +G      + + E G+ RVVV V  P   + G+ ++ L Q G
Sbjct: 82  GELAKNATAYLNLEPGDCHGDD-SAVRALREAGVSRVVVGVPHPLQHLHGKAIKALHQGG 140

Query: 124 IIVD----RMMESEGKIFLHAY----------LTRQVEKRSHITLKIAVSQDNMIGMAGC 169
             V+     ++ES G     A+          L R      +  LK A++ D  I  +  
Sbjct: 141 AKVEVVGQNLLES-GSGIQEAFKACQLVNAPLLYRAANGIPYSLLKYAMTVDGKIAASTG 199

Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229
            S  ++   S+ +V  +RA+SDAI+VG  TV  D+P LT R  G   H P+RI++     
Sbjct: 200 HSTWVSSTESRKRVFEMRARSDAIVVGGNTVRRDNPRLTTRQEG--GHLPVRIVMSRCLN 257

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
           L +D+ +   +    ++   +            + + ++  D    + ++     RG  S
Sbjct: 258 LPMDANLWDVSTTQTIVTTQKGARQDFQALLASRGVEVVEFDFLTPRAVMDYCYNRGYLS 317

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-GYLEKNFMCVRRDYFGS 348
           +L E G  ++   I S ++  ++ + S  +IG    P+P+ E G +E     + +    S
Sbjct: 318 ILWECGGMLSAPAIASGVIQKVMAFISPKIIGGITAPTPVGELGMVE-----MTQALQLS 372

Query: 349 DVCLEYIGKNLCLQEL 364
           DV  E +G ++ +  L
Sbjct: 373 DVAFEQVGPDMLVTGL 388


>gi|281424669|ref|ZP_06255582.1| riboflavin biosynthesis protein RibD [Prevotella oris F0302]
 gi|281401039|gb|EFB31870.1| riboflavin biosynthesis protein RibD [Prevotella oris F0302]
          Length = 318

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/319 (32%), Positives = 143/319 (44%), Gaps = 46/319 (14%)

Query: 28  NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG----ATAYVTLEPCSHYG 83
           NP V  +IV    +IG G     G  HAEV A      E       AT YV+LEPCSHYG
Sbjct: 24  NPMVGAVIVAHDRIIGEGYHVRCGEGHAEVNAFASVRPEDEKLLPEATIYVSLEPCSHYG 83

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYL 142
           ++PPCA  II  GI+R V    DP  +V GRG+Q +   GI +V  +ME E       ++
Sbjct: 84  KTPPCADLIISKGIKRCVCGCVDPFAKVQGRGIQRMRDAGIEVVVDVMEQECLALNRRFI 143

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCG---SVPITGFISKNQVHLLRAQSDAILVGIGT 199
           T     R +I LK A + +  I         S P+T  +    VH LRA+++A+LVG  T
Sbjct: 144 TFNALHRPYILLKWAQTANGFISKKDSPLQLSTPVTQML----VHQLRAENEAVLVGHTT 199

Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
            L D P L  R       +P RI+L P   ++   +  K   +A  I      D ++A  
Sbjct: 200 FLTDHPRLDVR--QWSGRNPERIVLSP--TMAARKERPKGWTVAATI------DEIIAHL 249

Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
           + +K                         SL+VEGG     +FI   L D I +  + I+
Sbjct: 250 YAEKK-----------------------QSLVVEGGRKTLQAFIERGLWDEIRVETAPIM 286

Query: 320 IGEG-GIPSPLEEGYLEKN 337
           I EG   P      ++EK 
Sbjct: 287 ITEGVAAPHFPTHAHIEKT 305


>gi|304383732|ref|ZP_07366191.1| riboflavin biosynthesis protein RibD [Prevotella marshii DSM 16973]
 gi|304335256|gb|EFM01527.1| riboflavin biosynthesis protein RibD [Prevotella marshii DSM 16973]
          Length = 315

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 109/363 (30%), Positives = 156/363 (42%), Gaps = 64/363 (17%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  ++ D ++M   L+ +         NP V  +IV +  +IG G     G  HAEV A 
Sbjct: 1   MSQATTDEKYMRRCLQLAECGRENAKPNPMVGAVIVVENRIIGEGYHVRYGEAHAEVNAF 60

Query: 61  EEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
                +       AT YV+LEPC+H G++PPC + IIE G+ RVVV   DP  +V GRG+
Sbjct: 61  ASICPKDAALLPSATLYVSLEPCAHQGKTPPCTRLIIEKGVGRVVVGCIDPFAKVQGRGI 120

Query: 117 QWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI---GMAGCGSV 172
           + L + GI V   ++E+E       ++  Q   R +I LK A + +  +     A   S 
Sbjct: 121 RMLQEAGIEVTLGVLEAECLALNRRFIVCQHHCRPYIILKWAQTTNGFLDDNNHAMQLST 180

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
           P T  +    VH LRA  DAIL+G  T   + P LT R       +P RI+L        
Sbjct: 181 PFTRML----VHQLRADVDAILIGRHTDEREHPALTVR--DWSGKNPRRIVLT------- 227

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
                                        K NI+          +L+  L   GV SLLV
Sbjct: 228 ----------------------------HKLNIH----------QLMNDLYTEGVQSLLV 249

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           EGGA    SF+N+ L D I +  + +V+  G   +P     L KN        +  ++  
Sbjct: 250 EGGATTHQSFLNAGLWDEIRVETAPVVVTNGTKAAP-----LPKNIQIANTKEYDGNLIT 304

Query: 353 EYI 355
            YI
Sbjct: 305 SYI 307


>gi|149276501|ref|ZP_01882645.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; 5-amino-6-(5-phosphoribosylamino)uracil
           [Pedobacter sp. BAL39]
 gi|149233021|gb|EDM38396.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; 5-amino-6-(5-phosphoribosylamino)uracil
           [Pedobacter sp. BAL39]
          Length = 332

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 150/309 (48%), Gaps = 26/309 (8%)

Query: 22  VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--------ARGATAY 73
           +G  S NP V C+IV +G +IG G     G  HAEV A+                 ATAY
Sbjct: 1   MGNVSPNPMVGCVIVSEGKIIGEGYHEQFGAAHAEVNAINSVWSAYPDQAAALLAQATAY 60

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMES 132
           V+LEPC+H+G++PPCA  +I+  +++VV+   DP   V+G+G+  L+  GI ++  ++E 
Sbjct: 61  VSLEPCAHFGKTPPCADLLIKNQLQKVVIGNRDPFPDVNGKGIAKLNAAGIEVISGILEE 120

Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
           E       + TR  ++R  I LK A + +            I+  +SK  VH  R + DA
Sbjct: 121 ECTALNIRFFTRISQQRPFIILKWANTANGYFAPKTDIPQWISSPLSKRLVHKWRTEEDA 180

Query: 193 ILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252
            LVG  T + D+P+L+ R       +P+RI++D   ++  D  +   A  A  II  E  
Sbjct: 181 TLVGKRTAIIDNPQLSAR--DWPGKNPVRILIDRRLEVPADRHLYDAA--AKTIIFNEVK 236

Query: 253 DPVLALAFRKKNINIIYCDCRDL-----KKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
             V        + +I Y    D+     +K+   L    + S++++GG  + + FI   L
Sbjct: 237 TAV--------DGHIHYIQMEDMQYYLPQKIAFQLYLMDIQSVIIDGGVNIINQFIAGGL 288

Query: 308 VDSIILYRS 316
            D   ++ S
Sbjct: 289 WDEARVFTS 297


>gi|147797438|emb|CAN60371.1| hypothetical protein VITISV_041263 [Vitis vinifera]
          Length = 587

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 158/324 (48%), Gaps = 22/324 (6%)

Query: 23  GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
           G TS +P+  C+I   G V+G G     G   AEVQA+E AGE  RGATAY+ +EP   +
Sbjct: 40  GFTSPHPNFGCVIATAGKVVGEGYLYAQGTKPAEVQAVEAAGELCRGATAYLNMEPGDCH 99

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES-EGKIFLHA- 140
           G     +  +++ GI R VV +  P   +    L+ +  +G+ VD + E  + KI   A 
Sbjct: 100 GDRTAVSA-LVKAGITRXVVGIRHPLQHLRSHALRAMRSEGLQVDVLGEDLKSKIVEEAL 158

Query: 141 ---------YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191
                     + R   +     LK A++ D  I  +   +  I+   S+ +V  LR +SD
Sbjct: 159 KSCLIVNAPLIYRAASRVPFSVLKYAMTLDGKIAASSGHASWISSKESRYRVFELRGRSD 218

Query: 192 AILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251
           AI+VG  TV  D+P+LT R  G   H P+RI++     L   + +   + + P I+VT+ 
Sbjct: 219 AIVVGGNTVRKDNPQLTARHGG--GHVPIRIVMSRTLNLPEVANLWDVSSV-PTIVVTQR 275

Query: 252 DDPVLALAFRK----KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
                  +F+K    K + ++  D  + + ++     RG  S+L E G  +A S I+S +
Sbjct: 276 ---XARKSFQKFLASKGVEVVEFDILNTRDVMEYFYDRGYLSILWECGGTLAASAISSGI 332

Query: 308 VDSIILYRSQIVIGEGGIPSPLEE 331
           +  +  + +  +IG    P+P+ E
Sbjct: 333 IHKVFAFVAPKIIGGKNAPTPVGE 356


>gi|282880496|ref|ZP_06289203.1| riboflavin biosynthesis protein RibD [Prevotella timonensis CRIS
           5C-B1]
 gi|281305599|gb|EFA97652.1| riboflavin biosynthesis protein RibD [Prevotella timonensis CRIS
           5C-B1]
          Length = 314

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 148/330 (44%), Gaps = 54/330 (16%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
            + D  +M   L+ ++    L   NP V  ++V    +IG G     G  HAEV A    
Sbjct: 6   DAIDKMYMRRCLQLAKQGRALAKPNPMVGAVLVCGDRIIGEGYHIKYGEAHAEVNAFAAV 65

Query: 64  GEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
            ++       +T YV+LEPCSHYG++PPCA  I+E  ++RVV    D   +V GRG+  L
Sbjct: 66  RQQDEHLLPESTLYVSLEPCSHYGKTPPCADLIVEKRVKRVVCGCIDVFAKVQGRGIDKL 125

Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            + GI V   ++E E K+    +       R +I LK A + +  I   G  ++ ++   
Sbjct: 126 RKAGIEVTVGVLEEECKLLNRQFNVFNTLHRPYILLKWAQTANGFIDDNG-RAIALSSPF 184

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           +K  VH LR++ DAILVG  T   + P+L  R       SP+R++L  H  +S       
Sbjct: 185 TKMLVHKLRSEYDAILVGRVTDEREHPQLNVR--EWSGPSPLRLVL--HHGIS------- 233

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
                                               L +LL  L  R + SLLVEGGA  
Sbjct: 234 ------------------------------------LPELLDDLYQRNLQSLLVEGGATT 257

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
             SFIN+ L D I +  + + +   G P+P
Sbjct: 258 LQSFINANLWDEIRIETAPVTV-TNGTPAP 286


>gi|315607126|ref|ZP_07882130.1| riboflavin biosynthesis protein RibD [Prevotella buccae ATCC 33574]
 gi|315251180|gb|EFU31165.1| riboflavin biosynthesis protein RibD [Prevotella buccae ATCC 33574]
          Length = 322

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 148/328 (45%), Gaps = 55/328 (16%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D +FM   L+ +R        NP V  +IV  DG +IG G     G  HAEV A      
Sbjct: 9   DEKFMRRCLQLARNGRQNAKPNPMVGAVIVSPDGRIIGEGYHVRCGEGHAEVNAFASVCP 68

Query: 66  EARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           E       +T YV+LEPCSH+G++PPCA  I+  G+RRVV    DP   VSGRG++ + +
Sbjct: 69  EDEALLHESTIYVSLEPCSHFGKTPPCADLIVRKGVRRVVCGCIDPFAEVSGRGVERIRK 128

Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI V   ++E E       ++      R +ITLK A + D  +   G  ++PI+   +K
Sbjct: 129 AGIEVTVGVLEQECLTLNRRFIVCNERDRPYITLKWAQTADGFLDDHG-RALPISSPFTK 187

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              H LRA++DAILVG  T   + P L  R        P RI+L     ++         
Sbjct: 188 MLSHKLRAENDAILVGRVTEEREHPRLNVR--EWSGPDPERIVLGHGASVT--------- 236

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
                         +LA  + +K                         SLLVEGGA    
Sbjct: 237 -------------GILARLYEEKK-----------------------QSLLVEGGAQTLQ 260

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSP 328
           SF+++ L D + +  + I +G+ G P+P
Sbjct: 261 SFLDADLWDELRVETAPITVGD-GTPAP 287


>gi|299143100|ref|ZP_07036209.1| riboflavin biosynthesis protein RibD [Prevotella oris C735]
 gi|298575428|gb|EFI47325.1| riboflavin biosynthesis protein RibD [Prevotella oris C735]
          Length = 318

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/319 (32%), Positives = 144/319 (45%), Gaps = 46/319 (14%)

Query: 28  NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG----ATAYVTLEPCSHYG 83
           NP V  +IV    +IG G     G  HAEV A      E       AT YV+LEPCSHYG
Sbjct: 24  NPMVGAVIVAHDRIIGEGYHVRCGEGHAEVNAFASVRPEDEKLLPEATIYVSLEPCSHYG 83

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYL 142
           ++PPCA  II  GI+R V    DP  +V GRG+Q +   GI +V  +ME+E       ++
Sbjct: 84  KTPPCADLIISKGIKRCVCGCVDPFAKVQGRGIQRMRDAGIEVVVGVMEAECLALNRRFI 143

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCG---SVPITGFISKNQVHLLRAQSDAILVGIGT 199
           T     R +I LK A + +  I         S P+T  +    VH LRA+++AILVG  T
Sbjct: 144 TFNALHRPYILLKWAQTANGFISKKDSPLQLSTPVTQML----VHQLRAENEAILVGHTT 199

Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
            L D P L  R       +P RI+L P   ++   +  +   +A  I      D V+A  
Sbjct: 200 FLTDHPRLDVR--QWSGRNPERIVLSP--TMAARKERPEGWTVAATI------DEVIAHL 249

Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
           + +K                         SL+VEGG     +FI   L D I +  + I+
Sbjct: 250 YAEKK-----------------------QSLIVEGGRKTLQAFIERGLWDEIRVETAPIM 286

Query: 320 IGEG-GIPSPLEEGYLEKN 337
           I EG   P      ++EK 
Sbjct: 287 ITEGVAAPHFPTHAHIEKT 305


>gi|148358764|ref|YP_001249971.1| riboflavin biosynthesis protein RibD [Legionella pneumophila str.
           Corby]
 gi|296106809|ref|YP_003618509.1| riboflavin biosynthesis protein [Legionella pneumophila 2300/99
           Alcoy]
 gi|148280537|gb|ABQ54625.1| riboflavin biosynthesis protein RibD [Legionella pneumophila str.
           Corby]
 gi|295648710|gb|ADG24557.1| riboflavin biosynthesis protein [Legionella pneumophila 2300/99
           Alcoy]
          Length = 357

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 148/333 (44%), Gaps = 11/333 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +F+ AAL  ++   G  + NPSV  + V++G +I +      G PHAE   L +   +  
Sbjct: 4   QFLLAALEQAKLGRGFCAPNPSVGAVAVQNGNIIAQAWHRGAGTPHAEQLLLSQIPPQTP 63

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD-VRVSGRGLQWLSQKGIIVD 127
             T Y+TLEPC+H+G++PPC   II  GI  VV    DP+ +       + L + GI V 
Sbjct: 64  EVTLYITLEPCNHWGKTPPCVDAIINHGIEEVVFAYFDPNPIVAKSNSSEKLREHGIQVR 123

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            +       F  +Y    +  +  +T+KIA + D  IG +    V ++  + +   H +R
Sbjct: 124 HIPIKAIDAFYKSYAYWTMTHKPRVTVKIAQTFDGKIGKSEGDRVVLSNVLCEQFTHQMR 183

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           A SD IL    TV  D+P +  RL+      P+ I+ D +  LS D+ I  TA    +  
Sbjct: 184 AASDVILTSAKTVQMDNPRMNARLDSGVVAKPVAIV-DRNLSLSDDTIIFSTAKHCHIY- 241

Query: 248 VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
                 P    A    N        +    DL  ++T L   G   + VE G A+  +  
Sbjct: 242 ----HQPQANQAKTYPNSTHYAMPLQNGLMDLDAIITHLGQLGYHDVWVEAGGAIFSALH 297

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
           +  LV    LY     +G   I +  ++G  EK
Sbjct: 298 SKGLVHRTYLYLVPGSLGHQAISAYQQQGIFEK 330


>gi|297735254|emb|CBI17616.3| unnamed protein product [Vitis vinifera]
          Length = 586

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 150/320 (46%), Gaps = 14/320 (4%)

Query: 23  GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
           G TS +P+  C+I   G V+G G     G   AEVQA+E AGE  RGATAY+ +EP   +
Sbjct: 40  GFTSPHPNFGCVIATAGKVVGEGYLYAQGTKPAEVQAVEAAGELCRGATAYLNMEPGDCH 99

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES-EGKIFLHA- 140
           G     +  +++ GI R VV +  P   +    L+ +  +G+ VD + E  + KI   A 
Sbjct: 100 GDRTAVSA-LVKAGITRAVVGIRHPLQHLRSHALRAMRSEGLQVDVLGEDLKSKIVEEAL 158

Query: 141 ---------YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191
                     + R   +     LK A++ D  I  +   +  I+   S+ +V  LR +SD
Sbjct: 159 KSCLIVNAPLIYRAASRVPFSVLKYAMTLDGKIAASSGHASWISSKESRYRVFELRGRSD 218

Query: 192 AILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251
           AI+VG  TV  D+P LT R  G   H P+RI++     L   + +   + +  +++    
Sbjct: 219 AIVVGGNTVRKDNPRLTARHGG--GHVPIRIVMSRTLNLPEVANLWDVSSVPTIVVTQRG 276

Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311
                      K + ++  D  + + ++     RG  S+L E G  +A S I+S ++  +
Sbjct: 277 ARKSFQKFLASKGVEVVEFDILNTRDVMEYFYDRGYLSILWECGGTLAASAISSGIIHKV 336

Query: 312 ILYRSQIVIGEGGIPSPLEE 331
             + +  +IG    P+P+ E
Sbjct: 337 FAFVAPKIIGGKNAPTPVGE 356


>gi|118617420|ref|YP_905752.1| bifunctional riboflavin biosynthesis protein RibG [Mycobacterium
           ulcerans Agy99]
 gi|118569530|gb|ABL04281.1| bifunctional riboflavin biosynthesis protein RibG [Mycobacterium
           ulcerans Agy99]
          Length = 339

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 155/309 (50%), Gaps = 43/309 (13%)

Query: 23  GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G T  NP V  +IV ++G V+G G T   G  HAEV AL +AG  A GA A VT+EPC+H
Sbjct: 25  GTTYPNPPVGAVIVDQEGWVVGIGGTQPSGGDHAEVVALRKAGGLAAGAIAVVTMEPCNH 84

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPD-------VRVSGRGLQWLSQKGIIVDRMMESEG 134
           +G++PPC   +IE  +  V+  V DP+        R+S  GLQ   + G++ D +     
Sbjct: 85  FGKTPPCVNALIEARVGTVIYGVADPNGIAGGGAGRLSAAGLQ--VRSGVLADHVAAGPL 142

Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
           + +LH    +Q     H+T K A S D     A   S  I+   ++  +H  RA SDAI+
Sbjct: 143 REWLH----KQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAARADLHRRRAISDAIV 198

Query: 195 VGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252
           VG GTVL DDP LT RL+   L    P+R+++     +  ++K++             ND
Sbjct: 199 VGTGTVLVDDPTLTARLSDGSLAAEQPLRVVVGKR-DIPPEAKVL-------------ND 244

Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
           D              +     +  ++L  L  R  T +L+EGG  +A +F+ +  ++ I+
Sbjct: 245 D-----------ARTMMIKTHEPVEVLRALSDR--TDVLLEGGPTLAGAFLRAGAINRIL 291

Query: 313 LYRSQIVIG 321
            Y + I++G
Sbjct: 292 AYVAPILLG 300


>gi|283458202|ref|YP_003362820.1| pyrimidine reductase, riboflavin biosynthesis [Rothia mucilaginosa
           DY-18]
 gi|283134235|dbj|BAI65000.1| pyrimidine reductase, riboflavin biosynthesis [Rothia mucilaginosa
           DY-18]
          Length = 436

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/324 (30%), Positives = 150/324 (46%), Gaps = 27/324 (8%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           A  M+ AL+ +R   G+   NP V  +I    G ++  G     G PHAE  AL  A   
Sbjct: 61  AEAMTLALQAARQ--GIRGANPLVGAVITDAHGHLLHVGYHRGAGTPHAEADALAAARAA 118

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G +  GA  YV+LEPC+H GR+ PC+  + E GI  +     D D   +  G  +L  +G
Sbjct: 119 GTDLTGARMYVSLEPCNHTGRTGPCSHAVAEAGISELYYAYSD-DTENAAGGAAYLRSQG 177

Query: 124 IIVDRMMESEGKIFL--HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           + V  M E     +     +     E+R  IT K A + D  I  A   S  ITG  ++ 
Sbjct: 178 VTVHAMEEFANASYQLNERWFIAAAERRPFITAKSASTLDGFIAAADGTSKWITGPAARI 237

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQ-EHSPMRIILDPHFKLSLDSKIIKT 239
             HL+R ++DA+++G  T L DDP L  R  NG + E  P+R+++    K  +       
Sbjct: 238 DGHLIRHRADAVMIGTRTTLMDDPTLDARDANGERFEKQPLRVVMG---KTEITENYRVR 294

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
            L  P  +     DP           N +     D ++LL  L  RGV  L++EGG  + 
Sbjct: 295 GLNPPEGVEA---DPQ----------NFLQVFTHDPRELLDELYARGVRHLMIEGGPGMV 341

Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323
             F     +D ++ YR+ +++G+G
Sbjct: 342 GLFAGEDFIDEMVWYRAPMIMGQG 365


>gi|255602376|ref|XP_002537841.1| riboflavin-specific deaminase, putative [Ricinus communis]
 gi|223514866|gb|EEF24541.1| riboflavin-specific deaminase, putative [Ricinus communis]
          Length = 110

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 57/108 (52%), Positives = 76/108 (70%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M ++S D  +M+ ALR +   +  T+ NP V C+IVK+G ++G G     G PHAEV AL
Sbjct: 1   MQMTSQDIEWMTRALRLAARGLYTTTPNPRVGCVIVKNGQLVGEGAHLKAGEPHAEVHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
             AGE+ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVVV + DP+
Sbjct: 61  RAAGEQARGATAYVTLEPCSHFGRTPPCADALVNAGVSRVVVAMQDPN 108


>gi|21672710|ref|NP_660777.1| riboflavin biosynthesis protein RibD [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25091139|sp|Q8K9A4|RIBD1_BUCAP RecName: Full=Diaminohydroxyphosphoribosylamino-pyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase
 gi|21623353|gb|AAM67988.1| riboflavin biosynthesis protein RibD [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 147

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/139 (41%), Positives = 91/139 (65%), Gaps = 1/139 (0%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A++ S+     TS NP+V C+IV++  ++G G     G  HAE+ AL  AGE+
Sbjct: 3   DRFYMTRAIKLSKLGEFTTSPNPNVGCVIVQNKKIVGEGWHKKYGENHAEINALNMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+G+TAY+TLEPC+H+G++PPC   II+ GI+ V++   DP+ +VSG+G+ +L +KGI V
Sbjct: 63  AKGSTAYITLEPCNHFGKTPPCCDAIIQSGIKNVIISSLDPNPKVSGKGVLYLRKKGISV 122

Query: 127 D-RMMESEGKIFLHAYLTR 144
              +M  E + +   +  R
Sbjct: 123 KIGLMSKESQKYNKGFFKR 141


>gi|303327265|ref|ZP_07357707.1| riboflavin biosynthesis protein RibD [Desulfovibrio sp. 3_1_syn3]
 gi|302863253|gb|EFL86185.1| riboflavin biosynthesis protein RibD [Desulfovibrio sp. 3_1_syn3]
          Length = 385

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 160/331 (48%), Gaps = 17/331 (5%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
           A FM  A+  +         NP+V  ++++DG V+ RG     G  HAEV  L++A   G
Sbjct: 7   APFMREAIALAEQGRWKACPNPTVGAVLLRDGRVVARGWHHEAGQDHAEVDCLKDAATRG 66

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            + +G T  VTLEPC+H G++PPC Q I++ GI RVV+ + DP+ + +G G   L   G+
Sbjct: 67  VDPKGCTLVVTLEPCNHQGKTPPCTQAILDAGISRVVMGLADPNPQAAG-GAARLRDTGM 125

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            ++  + E+E +  +  +L  Q   R ++ LK+A + D  I      S  I+   S+++V
Sbjct: 126 EVLGPVCEAECRDLVADFLVWQSTDRPYVILKMAATLDGRIATRNGQSQWISCETSRHEV 185

Query: 184 HLLRA----QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF-KLSLDSKIIK 238
             LRA       A+LVG GT  AD+P LT R +G     P+  +L     K   D  ++K
Sbjct: 186 QELRAGLGLSGGAVLVGGGTFRADNPRLTAREDGYDGPQPLACLLTSRLPKPDADFHLLK 245

Query: 239 TALLAPVII-VTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGR-GVTSLL 291
                 + +          A A R+  + ++          D  +L   L    G   +L
Sbjct: 246 ERPGQTIFLASPAAAASTTAQALRQMGVRVLALGPGPQGGPDFPELFRALRRELGCPYVL 305

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
            EGG  +A + + +  VD   L+ + +++G+
Sbjct: 306 CEGGGRLALALLEAGFVDEFHLHLAPMILGD 336


>gi|167577925|ref|ZP_02370799.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
           TXDOH]
          Length = 195

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/142 (43%), Positives = 88/142 (61%), Gaps = 1/142 (0%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M+ ALR +   +  T  NP V C+I +    +G G     G PHAEV AL EA
Sbjct: 5   SDIDRMHMAHALRLAEQGLYTTHPNPRVGCVIARGAQALGAGWHRRAGEPHAEVHALREA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPC+H+GR+PPCA  ++  G+ RVV+   DP  +V+GRG   L+  G
Sbjct: 65  GERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADAG 124

Query: 124 IIVDR-MMESEGKIFLHAYLTR 144
           I+V++ ++E++ +     + +R
Sbjct: 125 IVVEQGLLEAQARELNIGFFSR 146


>gi|168043725|ref|XP_001774334.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674326|gb|EDQ60836.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 521

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 173/372 (46%), Gaps = 20/372 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +SS D + +  A   +    GLT+ +P+  C+I      +G G     G   AEV A+E 
Sbjct: 34  LSSDDTQHLLRAAELAESSAGLTAPHPNFGCVIAHGPKSVGEGFLYAQGTKSAEVLAVER 93

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+ ATAY+ LEP   +G +    + + + G+ RVV+ +  P   + G+ +  L Q 
Sbjct: 94  AGELAKNATAYLNLEPGDCHGDA-SAVRALRQAGVSRVVIGISHPLQHLHGKAISALRQG 152

Query: 123 GIIVD----RMME--SEGKIFLHA-------YLTRQVEKRSHITLKIAVSQDNMIGMAGC 169
           G+ V+     ++E  S  +  L A       +L R      +  LK A++ D  I  +  
Sbjct: 153 GVHVEVGGQNLLECGSSTQEALKACQLVNAPFLFRAANSMPYSILKYAITVDGKIATSTG 212

Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229
            S  ++   S+ +V   RA+SDA++VG  TV  D+P LT R  G   + P+RI++     
Sbjct: 213 HSYWVSSTQSRKRVFETRARSDAVIVGGNTVRRDNPRLTTRQEG--GNLPVRIVMSRCLN 270

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
           L  D+ +   +    +++  +  +P        K + ++  D    + ++     RG  S
Sbjct: 271 LPKDANLWDVSTTQTIVMTQKGANPGFQKILASKGVEVVEFDVLTPRAVMEHCYDRGFLS 330

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           +L E G  +A   I S  +  ++ + S  +IG    P+P+ E  + +    ++     SD
Sbjct: 331 VLWECGGTLAAPAIASGAIQKVMAFISPKIIGGITAPTPVGELGMAEMTQALQL----SD 386

Query: 350 VCLEYIGKNLCL 361
           V  E IG ++ +
Sbjct: 387 VAFEQIGPDMLM 398


>gi|299115418|emb|CBN75583.1| riboflavin biosynthesis protein [Ectocarpus siliculosus]
          Length = 541

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 89/145 (61%), Gaps = 1/145 (0%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D   M  AL  +   +G T  NP+V C+I+ K+G V+G G     G PHAEV A+ +AGE
Sbjct: 70  DGAHMRRALELAAKGLGHTRPNPAVGCVILDKEGSVVGEGFHPRAGEPHAEVWAIRQAGE 129

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            ARG TAYV+LEPC+H+GR+PPC   ++ECG+ RVV  + DPD R +G GL+ L+  GI 
Sbjct: 130 RARGGTAYVSLEPCNHFGRTPPCTTALLECGVARVVAGMVDPDPRTAGSGLRRLADAGID 189

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRS 150
           V   +E      L++    +V  +S
Sbjct: 190 VSVGVEGAACHALNSAFVHRVSHKS 214


>gi|256831920|ref|YP_003160647.1| riboflavin biosynthesis protein RibD [Jonesia denitrificans DSM
           20603]
 gi|256685451|gb|ACV08344.1| riboflavin biosynthesis protein RibD [Jonesia denitrificans DSM
           20603]
          Length = 354

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 101/311 (32%), Positives = 142/311 (45%), Gaps = 43/311 (13%)

Query: 23  GLTSTNPSVACLIVKD---GIVIG--RGVTAYGGCPHAEVQALE---EAGEEARGATAYV 74
           G+   NP V  +IV +    + +G  RG     G  HAEV AL    + G     AT YV
Sbjct: 11  GVRGANPLVGAVIVDEHSGDVAVGHHRGR----GTAHAEVDALRCARDRGLRLDAATMYV 66

Query: 75  TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
           TLEPC+HYG +PPC   I++ GI RVV+  +DP    +G G   L   G++VD +     
Sbjct: 67  TLEPCNHYGVTPPCTDAILDAGIPRVVIAGEDPHDVAAG-GAHTLRAAGVVVDIVPLDAA 125

Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
                 +LT Q E+R  I  KIA S D         S  ITG  ++   H  R   DAI+
Sbjct: 126 VSLNERWLTAQRERRPFIRAKIAQSLDGFSAALDGTSQWITGPQAREYAHKQRHLVDAIV 185

Query: 195 VGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252
           VG GTVLAD P LT R +  G Q   P+R+ +  H     D+ I                
Sbjct: 186 VGTGTVLADQPTLTARYDPGGAQ---PLRVHMG-HTTTPPDAPI---------------- 225

Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
                   R  +   ++    D       L  RG   +L+EGG  +  +F+ + LVD + 
Sbjct: 226 --------RGADGRFVHLPTHDPNLAAHQLYERGARDILIEGGPRLIGAFLEAGLVDLLE 277

Query: 313 LYRSQIVIGEG 323
           +Y + +++G G
Sbjct: 278 VYTAPMLLGGG 288


>gi|183982231|ref|YP_001850522.1| bifunctional riboflavin biosynthesis protein RibG [Mycobacterium
           marinum M]
 gi|183175557|gb|ACC40667.1| bifunctional riboflavin biosynthesis protein RibG [Mycobacterium
           marinum M]
          Length = 339

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 155/309 (50%), Gaps = 43/309 (13%)

Query: 23  GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G T  NP V  +IV ++G V+G G T   G  HAEV AL +AG  A GA A VT+EPC+H
Sbjct: 25  GTTYPNPPVGAVIVDQEGRVVGIGGTQPSGGDHAEVVALRKAGGLAAGAIAVVTMEPCNH 84

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPD-------VRVSGRGLQWLSQKGIIVDRMMESEG 134
           +G++PPC   +IE  +  V+  V DP+        R+S  GLQ   + G++ D +     
Sbjct: 85  FGKTPPCVNALIEARVGTVIYGVADPNGIAGGGAGRLSAAGLQ--VRSGVLADHVAAGPL 142

Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
           + +LH    +Q     H+T K A S D     A   S  I+   ++  +H  RA SDAI+
Sbjct: 143 REWLH----KQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAARADLHRRRAISDAIV 198

Query: 195 VGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252
           VG GTVL DDP LT RL+   L    P+R+++     +  ++K++             ND
Sbjct: 199 VGTGTVLVDDPTLTARLSDGSLAAEQPLRVVVGKR-DIPPEAKVL-------------ND 244

Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
           D              +     +  ++L  L  R  T +L+EGG  +A +F+ +  ++ I+
Sbjct: 245 D-----------ARTMMIKTHEPVEVLRALSDR--TDVLLEGGPTLAGAFLRAGAINRIL 291

Query: 313 LYRSQIVIG 321
            Y + I++G
Sbjct: 292 AYVAPILLG 300


>gi|20139385|sp|P57533|RIBD1_BUCAI RecName: Full=Diaminohydroxyphosphoribosylamino-pyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase
          Length = 147

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/139 (41%), Positives = 87/139 (62%), Gaps = 1/139 (0%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  S+     T+ NP+V C+IVK+ I++G G     G  HAE+ AL  AGE+
Sbjct: 3   DIFYMKRAIELSKLGEFTTAPNPNVGCVIVKNNIIVGEGWHEQAGKNHAEINALIMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+G TAYVTLEPC+H+G++PPC   +I+ GI RVV+   DP+ ++SG G+ +L + GI V
Sbjct: 63  AQGGTAYVTLEPCNHFGKTPPCCNALIKSGINRVVISNIDPNPKISGNGILYLKKHGICV 122

Query: 127 DR-MMESEGKIFLHAYLTR 144
              ++  E K +   +  R
Sbjct: 123 KTGLLSKESKQYNKGFFKR 141


>gi|288929017|ref|ZP_06422863.1| riboflavin biosynthesis protein RibD [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288330001|gb|EFC68586.1| riboflavin biosynthesis protein RibD [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 348

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 158/367 (43%), Gaps = 72/367 (19%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D R+M   L+ +R  +     NP V  +IV +  +IG G   + G  HAEV A      E
Sbjct: 42  DERYMRRCLQLARCGLLGAKPNPMVGAVIVYNDRIIGEGYHIHCGEGHAEVNAFAAIRPE 101

Query: 67  AR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                  +T YV+LEPCSHYG++PPCA  II  G+ RVVV   DP  +V GRG++ L Q 
Sbjct: 102 DEPFLPHSTLYVSLEPCSHYGKTPPCADLIIRKGVPRVVVGCVDPFSKVQGRGIEKLRQA 161

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG---MAGCGSVPITGFI 178
           GI +V  ++E         ++  Q E+R ++ +K A + +  I     A   S P T  +
Sbjct: 162 GIEVVVGVLEKACLALNRRFIVFQREQRPYVIMKWAQTANGFIDDHFHALAISTPFTQML 221

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           S    H LRA+ DAILVG  T   + P L  R       +P R++L  H           
Sbjct: 222 S----HKLRAECDAILVGKTTDEREHPALNTR--HWWGENPRRLVLHRH----------- 264

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
                                             + + +LL  L    V +L+VEGGA V
Sbjct: 265 ----------------------------------QPITQLLAQLYQDNVQTLIVEGGAIV 290

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
             +FI++   D I    +   + +G     IP           F  ++++ +  +V  E+
Sbjct: 291 HQAFIDANCCDEIHRETAPFTVFDGTRTVAIPP---------KFQLIKQEIYDGNVLEEF 341

Query: 355 IGKNLCL 361
           + +   L
Sbjct: 342 VSEYASL 348


>gi|83717489|ref|YP_439477.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
           E264]
 gi|257142602|ref|ZP_05590864.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
           E264]
 gi|83651314|gb|ABC35378.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
           E264]
          Length = 389

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 62/142 (43%), Positives = 88/142 (61%), Gaps = 1/142 (0%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M+ ALR +   +  T  NP V C+I +    +G G     G PHAEV AL EA
Sbjct: 5   SDIDRMHMAHALRLAEQGLYTTHPNPRVGCVIARGAQTLGAGWHRRAGEPHAEVHALREA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPC+H+GR+PPCA  ++  G+ RVV+   DP  +V+GRG   L+  G
Sbjct: 65  GERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADAG 124

Query: 124 IIVDR-MMESEGKIFLHAYLTR 144
           I+V++ ++E++ +     + +R
Sbjct: 125 IVVEQGLLEAQARELNIGFFSR 146


>gi|288800423|ref|ZP_06405881.1| riboflavin biosynthesis protein RibD [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332636|gb|EFC71116.1| riboflavin biosynthesis protein RibD [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 341

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 102/304 (33%), Positives = 142/304 (46%), Gaps = 59/304 (19%)

Query: 28  NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAGEEA--RGATAYVTLEPCSHYG 83
           NP V  +IV DG +IG G     G  HAEV A    +A +E     AT YV LEPCSH+G
Sbjct: 54  NPMVGSVIVVDGRIIGEGYHIEYGKAHAEVNAFASVDAKDEHLLPKATLYVNLEPCSHFG 113

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYL 142
           ++PPCA  II  G+++VVV   DP   V GRG++ L + G+ ++  ++E E       ++
Sbjct: 114 KTPPCADLIISKGVKKVVVGCVDPYSEVRGRGIERLRKAGVKVLVGVLEKECLFLNRFFI 173

Query: 143 TRQVEKRSHITLKIAVSQDNMI---GMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199
           T    +R +I LK A + D  I   G A   S+P T  +    VH LRA+SDAILVG  T
Sbjct: 174 TSNTHQRPYIILKWAQTLDGFIDCDGEATAISIPFTSML----VHKLRAESDAILVGNNT 229

Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
              + P L  R    Q+  P +++L             KT                    
Sbjct: 230 EKKERPRLNVRHWSGQD--PKKVVLSS-----------KTT------------------- 257

Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
                          LK+LL+ L    + SL+VEGG    +SFI + L D I +  +   
Sbjct: 258 ---------------LKELLSSLHAENIQSLMVEGGLKTHNSFIEADLWDEIHIETAPFT 302

Query: 320 IGEG 323
           +G G
Sbjct: 303 VGNG 306


>gi|159471802|ref|XP_001694045.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158277212|gb|EDP02981.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 121

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 60/120 (50%), Positives = 78/120 (65%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  ++  AL  ++   G T  NP+V C+IVKDG V+G G     G PHAEV AL  AG  
Sbjct: 2   DRAYILKALELAKRAQGKTHPNPAVGCVIVKDGKVVGEGYHPKAGMPHAEVYALRGAGNN 61

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GATAYVTLEPC+HYGR+PPC++ ++E  + RVVV V DP+  V+  G+  L + GI V
Sbjct: 62  AEGATAYVTLEPCNHYGRTPPCSRALVEAKVARVVVGVGDPNPLVAAEGIATLEKAGIQV 121


>gi|53722153|ref|YP_111138.1| riboflavin biosynthesis protein [Burkholderia pseudomallei K96243]
 gi|134283488|ref|ZP_01770188.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           305]
 gi|217418752|ref|ZP_03450259.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           576]
 gi|237509799|ref|ZP_04522514.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           MSHR346]
 gi|254190205|ref|ZP_04896714.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254263160|ref|ZP_04954025.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1710a]
 gi|52212567|emb|CAH38593.1| putative riboflavin biosynthesis protein [Burkholderia pseudomallei
           K96243]
 gi|134245237|gb|EBA45331.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           305]
 gi|157937882|gb|EDO93552.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           Pasteur 52237]
 gi|217398056|gb|EEC38071.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           576]
 gi|235002004|gb|EEP51428.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           MSHR346]
 gi|254214162|gb|EET03547.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1710a]
          Length = 395

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 60/127 (47%), Positives = 80/127 (62%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M+ ALR +   +  T  NP V C+I +    +G G     G PHAEV AL EA
Sbjct: 5   SDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALREA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPC+H+GR+PPCA  ++  G+ RVV+   DP  +V+GRG   L+  G
Sbjct: 65  GERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADAG 124

Query: 124 IIVDRMM 130
           I+V++ +
Sbjct: 125 IVVEQGL 131


>gi|126457369|ref|YP_001075539.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1106a]
 gi|242313881|ref|ZP_04812898.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1106b]
 gi|126231137|gb|ABN94550.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1106a]
 gi|242137120|gb|EES23523.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1106b]
          Length = 395

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 60/127 (47%), Positives = 80/127 (62%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M+ ALR +   +  T  NP V C+I +    +G G     G PHAEV AL EA
Sbjct: 5   SDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALREA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPC+H+GR+PPCA  ++  G+ RVV+   DP  +V+GRG   L+  G
Sbjct: 65  GERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADAG 124

Query: 124 IIVDRMM 130
           I+V++ +
Sbjct: 125 IVVEQGL 131


>gi|167906520|ref|ZP_02493725.1| riboflavin biosynthesis protein [Burkholderia pseudomallei NCTC
           13177]
          Length = 397

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 60/127 (47%), Positives = 80/127 (62%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M+ ALR +   +  T  NP V C+I +    +G G     G PHAEV AL EA
Sbjct: 5   SDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALREA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPC+H+GR+PPCA  ++  G+ RVV+   DP  +V+GRG   L+  G
Sbjct: 65  GERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADAG 124

Query: 124 IIVDRMM 130
           I+V++ +
Sbjct: 125 IVVEQGL 131


>gi|325685005|gb|EGD27144.1| riboflavin biosynthesis protein RibD [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 280

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 85/253 (33%), Positives = 129/253 (50%), Gaps = 9/253 (3%)

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMES 132
           +TLEPC HYG+ PPC Q II+ GI+RVVV   DP   V+G+G+  L Q G+ V   ++  
Sbjct: 1   MTLEPCCHYGKQPPCTQLIIDSGIKRVVVGATDPHSLVTGKGIAALRQAGLEVSTGLLAK 60

Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
           E       Y         ++TLK A++ D+M+   G  +  ITG  +  +VH  RA   A
Sbjct: 61  EASQLNDHYNYFYQTGLPYVTLKQAMTLDHMLAKKGERTA-ITGAEAWTRVHQERAGYQA 119

Query: 193 ILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALLAPVIIVTE 250
           +L+G+ T + DDP L    + +  H P+R++LD   +L   LD ++      A   I+TE
Sbjct: 120 VLIGLETAIIDDPLLLTSEDLV--HPPVRVVLDRRGRLLEHLDLRLFSDK-RAETWILTE 176

Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
           N  P        K + I       +   + IL  +GV S+  EGGA +  S + + LV+ 
Sbjct: 177 N--PAFLEQDMPKQVKIFALPDGKISTSIKILADQGVQSVYAEGGAHLQESLLAAGLVND 234

Query: 311 IILYRSQIVIGEG 323
           +I Y +   +G G
Sbjct: 235 VISYVAPSFLGRG 247


>gi|126442868|ref|YP_001062584.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           668]
 gi|126222359|gb|ABN85864.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           668]
          Length = 401

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 60/127 (47%), Positives = 80/127 (62%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M+ ALR +   +  T  NP V C+I +    +G G     G PHAEV AL EA
Sbjct: 5   SDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALREA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPC+H+GR+PPCA  ++  G+ RVV+   DP  +V+GRG   L+  G
Sbjct: 65  GERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADAG 124

Query: 124 IIVDRMM 130
           I+V++ +
Sbjct: 125 IVVEQGL 131


>gi|254193400|ref|ZP_04899834.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           S13]
 gi|169650153|gb|EDS82846.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           S13]
          Length = 398

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 60/127 (47%), Positives = 80/127 (62%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M+ ALR +   +  T  NP V C+I +    +G G     G PHAEV AL EA
Sbjct: 5   SDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALREA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPC+H+GR+PPCA  ++  G+ RVV+   DP  +V+GRG   L+  G
Sbjct: 65  GERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADAG 124

Query: 124 IIVDRMM 130
           I+V++ +
Sbjct: 125 IVVEQGL 131


>gi|76819539|ref|YP_335244.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1710b]
 gi|76584012|gb|ABA53486.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1710b]
          Length = 454

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 60/127 (47%), Positives = 80/127 (62%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M+ ALR +   +  T  NP V C+I +    +G G     G PHAEV AL EA
Sbjct: 64  SDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALREA 123

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPC+H+GR+PPCA  ++  G+ RVV+   DP  +V+GRG   L+  G
Sbjct: 124 GERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADAG 183

Query: 124 IIVDRMM 130
           I+V++ +
Sbjct: 184 IVVEQGL 190


>gi|326693482|ref|ZP_08230487.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Leuconostoc argentinum KCTC 3773]
          Length = 352

 Score =  122 bits (306), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 162/341 (47%), Gaps = 18/341 (5%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE--AGEEARGATAYVTLEPCSHY 82
           T  NP V  +IVKD  V+  G     G  HAE+ A     A  +A+G T YVTLEPC+  
Sbjct: 22  TFENPRVGAVIVKDNQVLAVGWHERFGGAHAEINAFHHLGAAHDAQGGTLYVTLEPCAVR 81

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
           G+   CA+ I + G+ RVV+   DP+    G G+Q L   GI V  +   + +    A+ 
Sbjct: 82  GKVAACAETIRDWGLARVVIGDLDPNPTTHGLGVQKLRAAGISVVVLDTDDSRQLNPAFY 141

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
               + + +I LK A S +  +         IT  ++   VH  RA+  AI+VG  T + 
Sbjct: 142 QYHEQHQPYIQLKSAQSHNGYVSAVRGQRSKITDAVADLDVHRQRARHSAIIVGSETWVI 201

Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
           D P LT R   L    P R+++    +L+ +        L   ++ TEN     A   ++
Sbjct: 202 DQPRLTVRDVMLTHQQPQRVVIYRRGRLAHEP----ATRLKDWLVYTEN-----AQFAQQ 252

Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
           +N+ ++      L  ++  L  +G+ S++VEGG  +  SF+ ++L    ++Y +  ++ +
Sbjct: 253 ENVELMTA---GLPGVMADLGRKGMQSVMVEGGPILITSFLQAQLWHECLIYTADRLLPD 309

Query: 323 G--GIPSPLEEGYLEKNFMCVRRDYFGSDV--CLEYIGKNL 359
           G  GI  P     +++     R+ Y   +V  CL+   K+L
Sbjct: 310 GVRGIVLPQLPDDIQRIGHTQRQRYVNQEVATCLQASRKSL 350


>gi|260910408|ref|ZP_05917080.1| riboflavin biosynthesis protein RibD [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260635484|gb|EEX53502.1| riboflavin biosynthesis protein RibD [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 351

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 106/362 (29%), Positives = 157/362 (43%), Gaps = 68/362 (18%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
            + D R+M   L+ +R  +     NP V  +IV    +IG G   + G  HAEV A    
Sbjct: 47  QTTDERYMRRCLQLARCGLLGAKPNPMVGAVIVYRDRIIGEGYHVHCGEGHAEVNAFAAV 106

Query: 64  GEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
             E       +T YV+LEPCSHYG++PPCA  II   + RVVV   DP  +V GRG++ L
Sbjct: 107 RPEDESLLPQSTLYVSLEPCSHYGKTPPCADLIIRKEVARVVVGCIDPFAKVQGRGIEKL 166

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG---MAGCGSVPIT 175
            + GI +V  ++E E       ++  Q E+R ++ +K A + +  I     A   S P T
Sbjct: 167 RRAGIEVVVGVLEKECLALNRHFIVFQREQRPYVIMKWAQTANGFIDDHYRALAISTPFT 226

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
             +S    H LRA+ DAILVG  T   + P L  R       SP R++L           
Sbjct: 227 QMLS----HKLRAECDAILVGKTTDEREHPALNTR--HWWGKSPRRLVL----------- 269

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
                                    R++ I           +LL  L    V +L+VEGG
Sbjct: 270 ------------------------HRQQAI----------AQLLAQLYQDNVQTLIVEGG 295

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG--GIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           + V  +FIN+   D I    +   + +G   I  P         F  ++++ F  +V  E
Sbjct: 296 STVHQAFINANCCDEIHRETAPFTVFDGTKAIDIP-------PKFRLIKQEIFDGNVMEE 348

Query: 354 YI 355
           ++
Sbjct: 349 FV 350


>gi|254497578|ref|ZP_05110366.1| riboflavin biosynthesis protein RibD [Legionella drancourtii
           LLAP12]
 gi|254353194|gb|EET11941.1| riboflavin biosynthesis protein RibD [Legionella drancourtii
           LLAP12]
          Length = 351

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 152/332 (45%), Gaps = 10/332 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +F+ AAL  +R   G  + NP V  + V++G +I +      G PHAE   L +   +  
Sbjct: 4   KFLLAALEQARLGQGFCAPNPCVGAVAVQNGNIIAQTCHHGAGTPHAEQLLLAQIPPKTP 63

Query: 69  GATAYVTLEPCSHYGRSPPCAQFII-ECGIRRVVVCVDDPD-VRVSGRGLQWLSQKGIIV 126
           G + Y++LEPC+H+GR+PPC   II   GI  V+    DP+ +       + L  +GI V
Sbjct: 64  GVSLYISLEPCNHWGRTPPCVDVIINHGGIEHVIFAYADPNPIVAQNNSTEKLRAQGIKV 123

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
                +E   F  +Y    + K+  +T+KIA + +  IG      V ++  +     H +
Sbjct: 124 THYPVAEITEFYKSYTYWTITKKPRVTVKIAQTLNGKIGRKVGERVVLSNSLCGEFTHQM 183

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA +D IL    T+  D+P+L  RL   ++  P+ II D    L+ +++I  TA    + 
Sbjct: 184 RAATDVILTSARTIQLDNPKLNVRLGAKEQAKPVAII-DRQLTLNNEAQIFSTAAHCHIY 242

Query: 247 IVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
              E       +++ K +++ +       DL  ++  L   G   + VE G A+  +   
Sbjct: 243 YCDERK-----ISYSKSSLHRMPMKNGVMDLSAVIRHLGELGYHDVWVEAGGAIFTALHQ 297

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
             LV    LY     + +  I +  + G  ++
Sbjct: 298 EGLVHRTYLYLVPTSLEQNAISAYQQSGLFDR 329


>gi|323699086|ref|ZP_08110998.1| riboflavin biosynthesis protein RibD [Desulfovibrio sp. ND132]
 gi|323459018|gb|EGB14883.1| riboflavin biosynthesis protein RibD [Desulfovibrio desulfuricans
           ND132]
          Length = 364

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 154/334 (46%), Gaps = 22/334 (6%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
           M+ A+  +    G T+ NP V  ++V+DG+++  G     G  HAE + L +A   G + 
Sbjct: 1   MARAVELAGRGRGATAPNPCVGAVLVRDGVIVAEGWHTRFGRLHAERECLADARRKGVDP 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           RGA  YVTLEPC+H+G++PPC + +IE G+  V V   DP+   +G G++ L   GI V 
Sbjct: 61  RGAAMYVTLEPCNHHGKTPPCTEALIEAGVAEVFVGTRDPNPVAAG-GVEKLRAHGIEVT 119

Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++E   +  +  +L  Q     +  +K+A + D  I  A     P++   S  +VH L
Sbjct: 120 VGVLEQPCRDLIADFLLWQNTHSCYNIVKMAATLDGKIAAAARRPEPVSCPESLARVHDL 179

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIIL------DPHFKLSLDSKIIK 238
           RA + A++VG  T  AD+P LTCR   L      P  +I+      DP     L  +  +
Sbjct: 180 RALAGAVIVGGNTFYADNPSLTCRKKDLPPDFVQPFGVIVTSRLPDDPSRFTLLRERPER 239

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-----GVTSLLVE 293
              +            VL    R++  ++     R    +L     R     G    L E
Sbjct: 240 AIFMTSKTAAHSPQADVL----RRRGTSVWPMPGRAGSLVLACGFERLRYDCGCHYTLCE 295

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           GG   A + I   L D ++ + +  ++G+   PS
Sbjct: 296 GGGRFALALIEQGLADELVHFVAPRILGDDAAPS 329


>gi|219682366|ref|YP_002468750.1| riboflavin deaminase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|219622099|gb|ACL30255.1| riboflavin deaminase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|311086187|gb|ADP66269.1| riboflavin deaminase [Buchnera aphidicola str. LL01 (Acyrthosiphon
           pisum)]
 gi|311086763|gb|ADP66844.1| riboflavin deaminase [Buchnera aphidicola str. TLW03 (Acyrthosiphon
           pisum)]
 gi|311087351|gb|ADP67431.1| riboflavin deaminase [Buchnera aphidicola str. JF99 (Acyrthosiphon
           pisum)]
 gi|311087851|gb|ADP67930.1| riboflavin deaminase [Buchnera aphidicola str. JF98 (Acyrthosiphon
           pisum)]
          Length = 141

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/135 (42%), Positives = 85/135 (62%), Gaps = 1/135 (0%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A+  S+     T+ NP+V C+IVK+ I++G G     G  HAE+ AL  AGE+A+G 
Sbjct: 1   MKRAIELSKLGEFTTAPNPNVGCVIVKNNIIVGEGWHKQAGKNHAEINALIMAGEKAQGG 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
           TAYVTLEPC+H+G++PPC   +I+ GI RVV+   DP+ ++SG G+ +L + GI V   +
Sbjct: 61  TAYVTLEPCNHFGKTPPCCNALIKSGINRVVISNIDPNPKISGNGILYLKKHGICVKTGL 120

Query: 130 MESEGKIFLHAYLTR 144
           +  E K +   +  R
Sbjct: 121 LSKESKQYNKGFFKR 135


>gi|163784632|ref|ZP_02179466.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880100|gb|EDP73770.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 279

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/241 (32%), Positives = 126/241 (52%), Gaps = 6/241 (2%)

Query: 92  IIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRS 150
           IIE  I++VVV   DP+  V+G+G++ L + G+ ++  ++E + K     +     EKR 
Sbjct: 4   IIENKIKKVVVATLDPNPLVAGKGIKLLEEHGVEVITGVLEDKAKKLNEDFFVYIKEKRP 63

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
            I LK A + D  I      S  ITG  ++   H LR ++ A+LVG+GTVL D+P+LT R
Sbjct: 64  FIHLKWAQTIDGKIATFTGSSKWITGEKARKYAHKLRKEASAVLVGVGTVLKDNPQLTVR 123

Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270
            +   +  P+R+++D + K  +D KI    +   V +    D   +    +K+NI II  
Sbjct: 124 -HIKTDKQPVRVLIDKNLKTPIDYKIFDETVKTIVFVGKNADKEKIKNLSKKENIEIIKL 182

Query: 271 DCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
                  +LK +L  L  R +  +LVEGG  +   FI   L D I ++ +  ++GE GI 
Sbjct: 183 PLDKGKFELKDILNELYKRDIIHILVEGGKEIITQFIKENLFDKISVFIAPKIVGEEGIS 242

Query: 327 S 327
           S
Sbjct: 243 S 243


>gi|15617059|ref|NP_240272.1| riboflavin deaminase [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219681811|ref|YP_002468197.1| riboflavin deaminase [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|257471513|ref|ZP_05635512.1| riboflavin deaminase [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|25403627|pir||F84983 diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26)
           [imported] - Buchnera sp. (strain APS)
 gi|10039124|dbj|BAB13158.1| riboflavin deaminase [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219624654|gb|ACL30809.1| riboflavin deaminase [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
          Length = 141

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/135 (42%), Positives = 85/135 (62%), Gaps = 1/135 (0%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A+  S+     T+ NP+V C+IVK+ I++G G     G  HAE+ AL  AGE+A+G 
Sbjct: 1   MKRAIELSKLGEFTTAPNPNVGCVIVKNNIIVGEGWHEQAGKNHAEINALIMAGEKAQGG 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
           TAYVTLEPC+H+G++PPC   +I+ GI RVV+   DP+ ++SG G+ +L + GI V   +
Sbjct: 61  TAYVTLEPCNHFGKTPPCCNALIKSGINRVVISNIDPNPKISGNGILYLKKHGICVKTGL 120

Query: 130 MESEGKIFLHAYLTR 144
           +  E K +   +  R
Sbjct: 121 LSKESKQYNKGFFKR 135


>gi|226200200|ref|ZP_03795745.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           Pakistan 9]
 gi|225927708|gb|EEH23750.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           Pakistan 9]
          Length = 384

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/120 (48%), Positives = 78/120 (65%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ ALR +   +  T  NP V C+I +    +G G     G PHAEV AL EAGE ARGA
Sbjct: 1   MAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALREAGERARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           TAYVTLEPC+H+GR+PPCA  ++  G+ RVV+   DP  +V+GRG   L+  GI+V++ +
Sbjct: 61  TAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADAGIVVEQGL 120


>gi|116610344|gb|ABK03068.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Arthrobacter sp.
           FB24]
          Length = 386

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 147/309 (47%), Gaps = 33/309 (10%)

Query: 22  VGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEA---RGATAYVTLE 77
           +G    NP V  +++  DG  +  G     G  HAE  A+ +AG +     G+T  VTLE
Sbjct: 10  LGPRGANPLVGAVVIGPDGRQLVTGYHRGAGTAHAEADAIAQAGRQGLDLTGSTMVVTLE 69

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
           PC+H GR+ PCAQ II+ GI  VV  VDDP    +G G   L   G+ V   + +     
Sbjct: 70  PCNHCGRTGPCAQAIIDAGIASVVYAVDDPHDPAAG-GAATLRAAGVSVRSGLSARAAFE 128

Query: 138 LH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
           L+  +    + +R  +TL IA + D+ I  A   S  I+   S    H LR++ DAILVG
Sbjct: 129 LNRRWFEAVLGQRPFVTLHIAQTLDSRIAAADGTSQWISSPESLADNHGLRSRVDAILVG 188

Query: 197 IGTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
             T+L D+P LT R    +   + P+R ++                      +    DD 
Sbjct: 189 TQTLLVDNPRLTARDASGKPAGNQPLRAVMG---------------------LRGIPDD- 226

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
               A    +  +++   RD  + L  L   GV  ++VEGG+++  +F+ + LVD +I+Y
Sbjct: 227 ---AAIHGDDGRVLHLPTRDPHEALERLFSAGVRHVMVEGGSSILSAFLAAGLVDELIVY 283

Query: 315 RSQIVIGEG 323
            +  ++G G
Sbjct: 284 LAPTLLGSG 292


>gi|304570635|ref|YP_831168.2| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Arthrobacter sp. FB24]
          Length = 407

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 146/308 (47%), Gaps = 33/308 (10%)

Query: 23  GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEA---RGATAYVTLEP 78
           G    NP V  +++  DG  +  G     G  HAE  A+ +AG +     G+T  VTLEP
Sbjct: 32  GPRGANPLVGAVVIGPDGRQLVTGYHRGAGTAHAEADAIAQAGRQGLDLTGSTMVVTLEP 91

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138
           C+H GR+ PCAQ II+ GI  VV  VDDP    +G G   L   G+ V   + +     L
Sbjct: 92  CNHCGRTGPCAQAIIDAGIASVVYAVDDPHDPAAG-GAATLRAAGVSVRSGLSARAAFEL 150

Query: 139 H-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
           +  +    + +R  +TL IA + D+ I  A   S  I+   S    H LR++ DAILVG 
Sbjct: 151 NRRWFEAVLGQRPFVTLHIAQTLDSRIAAADGTSQWISSPESLADNHGLRSRVDAILVGT 210

Query: 198 GTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
            T+L D+P LT R    +   + P+R ++                      +    DD  
Sbjct: 211 QTLLVDNPRLTARDASGKPAGNQPLRAVMG---------------------LRGIPDD-- 247

Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
              A    +  +++   RD  + L  L   GV  ++VEGG+++  +F+ + LVD +I+Y 
Sbjct: 248 --AAIHGDDGRVLHLPTRDPHEALERLFSAGVRHVMVEGGSSILSAFLAAGLVDELIVYL 305

Query: 316 SQIVIGEG 323
           +  ++G G
Sbjct: 306 APTLLGSG 313


>gi|54401353|gb|AAV34447.1| predicted diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [uncultured proteobacterium RedeBAC7D11]
          Length = 366

 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 157/337 (46%), Gaps = 27/337 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNP--SVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           D+ F+S A+  S    G  +  P   V C+IVKD  +IGRG     G  HAE+ A+ +  
Sbjct: 3   DSFFISKAI--SLGLKGRFTAKPGVKVGCVIVKDNKIIGRGFYQKYGGSHAEINAINDVK 60

Query: 65  EEAR--------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           ++ +        G+  +VTLEPCS  G++  C   + +   +R++V   DP    +  G+
Sbjct: 61  KKYKTNYLSKLSGSDLFVTLEPCSKKGKTGACVNELKKYDFKRIIVGAKDP----TQSGI 116

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
             L + G  V  +   + +I   ++  +   K+  +  K+A+S D+    A      ITG
Sbjct: 117 NSLQRAGYEVKNLNNQQCQILNESFFHKVKSKKPFVRAKVAMSSDHKSVFASKQRKWITG 176

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH----SPMRIILDPHFKLSL 232
             ++N V +LRA++D IL G GT+  D+P +  R   +  +     P R +     KL+ 
Sbjct: 177 IPARNDVQILRAEADIILTGAGTINEDNPSMNVRSKKIIANENFIQPERYVFSNSLKLNW 236

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVT 288
            +   K      V++ ++   P L+     K+I+++      D  + K  +  +    V 
Sbjct: 237 SAPFFKLP-GKKVVVTSKKSLPKLSQGI--KDISLMNLGKNNDSLNSKDFIKRISKLNVN 293

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           ++L+E G  +  SF +  LVD  I Y S   +G+  +
Sbjct: 294 NILIEAGPRLLGSFSDHDLVDEYIFYISPEKLGDKAL 330


>gi|270157224|ref|ZP_06185881.1| riboflavin biosynthesis protein RibD [Legionella longbeachae
           D-4968]
 gi|289164378|ref|YP_003454516.1| Riboflavin biosynthesis protein RibD [Legionella longbeachae
           NSW150]
 gi|269989249|gb|EEZ95503.1| riboflavin biosynthesis protein RibD [Legionella longbeachae
           D-4968]
 gi|288857551|emb|CBJ11389.1| Riboflavin biosynthesis protein RibD [Legionella longbeachae
           NSW150]
          Length = 357

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 140/310 (45%), Gaps = 11/310 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +F+ AAL  +R   G  + NP V  + V++G +I +      G PHAE   L +   +  
Sbjct: 4   KFLLAALEQARLGQGHCAPNPCVGAVAVQNGTIIAQAHHRGAGTPHAEQLLLTQIPPKTP 63

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD-VRVSGRGLQWLSQKGIIVD 127
           G   Y++LEPC+H+GR+PPC   II  G+  VV    DP+ +       + L  +GI V 
Sbjct: 64  GICLYISLEPCNHWGRTPPCVDAIINHGVEEVVFGYLDPNPIVAQNNSSEKLRSRGIKVT 123

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
               +E   F  +Y    + ++  IT+KIA + +  IG A    V ++  + +   H +R
Sbjct: 124 HYPVAEITEFYKSYTYWTLTQKPRITVKIAQTLNGKIGQAEGERVILSNALCEQFTHQMR 183

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           A +D +L    TV  D+P +  RLN  ++   + II D    L+ +++I  TA    +  
Sbjct: 184 AAADVVLTTAKTVQLDNPRMNVRLNNEEQKKTIAII-DRQLVLNQEARIFSTAAHCHIFH 242

Query: 248 VTENDDPVLALAFR---KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
             E         F    +KN         DL  ++  L   G   + VE G A+  +   
Sbjct: 243 CNEQKIFYPNSTFHPVPEKN------GVMDLNVVIKHLGALGYHDVWVEAGGALFSALHR 296

Query: 305 SRLVDSIILY 314
             LV    LY
Sbjct: 297 EGLVHRTYLY 306


>gi|288926889|ref|ZP_06420789.1| riboflavin biosynthesis protein RibD [Prevotella buccae D17]
 gi|288336328|gb|EFC74709.1| riboflavin biosynthesis protein RibD [Prevotella buccae D17]
          Length = 286

 Score =  119 bits (298), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 114/224 (50%), Gaps = 9/224 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D +FM   L+ +R        NP V  +IV  DG +IG G     G  HAEV A      
Sbjct: 26  DEKFMRRCLQLARNGRQNAKPNPMVGAVIVSPDGRIIGEGYHVRCGEGHAEVNAFASVRP 85

Query: 66  EARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           E       +T YV+LEPCSH+G++PPCA  I+  G+RRVV    DP   VSGRG++ + +
Sbjct: 86  EDEALLHESTIYVSLEPCSHFGKTPPCADLIVRKGVRRVVCGCIDPFAEVSGRGVERIRK 145

Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI V   ++E E       ++      R +ITLK A + D  +   G  ++PI+   +K
Sbjct: 146 AGIEVTVGVLEQECLTLNRRFIVCNERDRPYITLKWAQTADGFLDDHG-RALPISSPFTK 204

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIIL 224
              H LRA++DAILVG  T   + P L  R        P RI+L
Sbjct: 205 MLSHKLRAENDAILVGRVTEEREHPRLDVR--EWSGPDPERIVL 246


>gi|240172784|ref|ZP_04751443.1| bifunctional riboflavin biosynthesis protein RibG [Mycobacterium
           kansasii ATCC 12478]
          Length = 339

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 152/309 (49%), Gaps = 43/309 (13%)

Query: 23  GLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G T  NP V  +IV  +G V+G G T   G  HAEV AL  AG  A GA A VT+EPC+H
Sbjct: 25  GSTYPNPPVGAVIVDTEGRVVGVGGTQPTGGDHAEVVALRRAGGLAAGAIAVVTMEPCNH 84

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPD-------VRVSGRGLQWLSQKGIIVDRMMESEG 134
           YG++PPC   +IE  +  V+  V DP+        R+S  G+Q   + G++ D +     
Sbjct: 85  YGKTPPCVNALIEARVGTVIYGVADPNGIAGGGAGRLSAAGVQ--VRSGVLADHVAAGPL 142

Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
           + +LH    +Q     H+T K A S D     A   S  I+   ++  +H  RA +DAI+
Sbjct: 143 REWLH----KQRTGLPHVTWKYATSVDGRSAAADGSSQWISSEAARADLHRRRAIADAIV 198

Query: 195 VGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252
           VG GTVLADDP LT RL    L    P+R+++     +  ++K++             ND
Sbjct: 199 VGTGTVLADDPALTARLPDGSLAPKQPLRVVVGTR-DIPPEAKVL-------------ND 244

Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
           D    +    + + +       L+ LL        T +L+EGG  VA +F+    +  I+
Sbjct: 245 DARTMVLRTHEPVEV-------LRALLDY------TDVLLEGGPTVAGAFLRCGAISRIL 291

Query: 313 LYRSQIVIG 321
            Y + I++G
Sbjct: 292 AYVAPILLG 300


>gi|329850574|ref|ZP_08265419.1| riboflavin biosynthesis protein ribD [Asticcacaulis biprosthecum
           C19]
 gi|328840889|gb|EGF90460.1| riboflavin biosynthesis protein ribD [Asticcacaulis biprosthecum
           C19]
          Length = 215

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 71/179 (39%), Positives = 100/179 (55%), Gaps = 1/179 (0%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R  +TLK+A + D  I  A   S  ITG  ++  VH LRA  DA+LVGI T L DDPELT
Sbjct: 2   RPQVTLKLATTLDGRIATASGESRWITGEEARRCVHELRAGHDAVLVGIETALKDDPELT 61

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
            RL+G + + P R++LD   +L L +K+++TA + P  +VT  +     LA + K I + 
Sbjct: 62  VRLHGYEGYQPTRVVLDSKGRLPLHAKMVQTARIIPTYVVTTGELSGEMLAAQVKAIKVP 121

Query: 269 YCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
               R DL   L  L   G+  L VEGG  VA +F+ +  VD +  +RS  ++G  G P
Sbjct: 122 SKHQRVDLDAALAALSKVGIERLFVEGGGVVATAFLRAGYVDRLEWFRSSTILGGDGRP 180


>gi|294054578|ref|YP_003548236.1| riboflavin biosynthesis protein RibD [Coraliomargarita akajimensis
           DSM 45221]
 gi|293613911|gb|ADE54066.1| riboflavin biosynthesis protein RibD [Coraliomargarita akajimensis
           DSM 45221]
          Length = 369

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 149/332 (44%), Gaps = 28/332 (8%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE-AR 68
           +M+ AL+ +    G T  NP V  +IV+DG ++  G     G PHAE++AL   G   A 
Sbjct: 11  YMARALKLAAQGWGTTHPNPMVGAVIVEDGAIVAEGWHTAAGQPHAEIEALAALGRAPAS 70

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI---- 124
            A  YVTLEPCS  GR+  C   I+  GI+ VV+   DP+   +G GL  L + G+    
Sbjct: 71  DAVLYVTLEPCSTSGRTGACTDAILRAGIQNVVIGATDPNPDHAGNGLDLLREAGVHVQA 130

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            I+++  +    IF H ++ RQ      I  KIA + D     +   S  +TG +++  V
Sbjct: 131 GILEQECDDLNLIFNH-WIVRQ---SPLIAAKIATTLDGKFAASNGQSKWVTGPLARADV 186

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPH---------FKLSLDS 234
              R    AI V   T +AD+P LT RL       P+R + D +          +L  DS
Sbjct: 187 MHWRRYFPAIAVTAQTAVADNPSLTSRLED-GTWCPLRFVFDRNLATLERLGDLQLYNDS 245

Query: 235 KIIKTALLAPVIIVTENDD--PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
               T     ++  +E  D  P+L +  R     ++  D  D+           +  + +
Sbjct: 246 FAENT-----IVCCSEASDPKPLLDVGIRCWQFPVVD-DHLDIDAFRRRCFEESIAGVYI 299

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           E G  +  + I +R VD +  Y S   + + G
Sbjct: 300 EAGPGLMTAMIEARFVDYVFHYLSPRYMSDSG 331


>gi|260593448|ref|ZP_05858906.1| riboflavin biosynthesis protein RibD [Prevotella veroralis F0319]
 gi|260534564|gb|EEX17181.1| riboflavin biosynthesis protein RibD [Prevotella veroralis F0319]
          Length = 331

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 103/337 (30%), Positives = 147/337 (43%), Gaps = 56/337 (16%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
           M  +  D ++M   L+ +   +     NP V  +IV K+G +IG G     G  HAEV A
Sbjct: 6   MKQADIDEKYMRRCLQLAYNGMLKAKPNPMVGAVIVSKEGRIIGEGYHVQCGKGHAEVNA 65

Query: 60  LEEAGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
                E        AT YV+LEPCSHYG++PPCA  II  G+ RVV    DP   V GRG
Sbjct: 66  FASVKEVDSHLLHDATLYVSLEPCSHYGKTPPCADLIIRKGVHRVVCGCIDPFAEVHGRG 125

Query: 116 LQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP- 173
           +Q L   GI V   ++E E       ++T     R ++ LK A +  N    A  G +P 
Sbjct: 126 VQKLRDAGIEVTVGVLEKECLELNKRFITYNTHHRPYVILKWAQTMGN---PAYIGYLPS 182

Query: 174 -------ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDP 226
                  I+   +K  VH LRA++DAILVG  T   + P+LT R       +P +I+   
Sbjct: 183 KDYHPLNISTPFTKMLVHKLRAENDAILVGRTTNDLEHPQLTVR--EWSGKNPEKIV--- 237

Query: 227 HFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286
              LS           +P                               + +L  L    
Sbjct: 238 ---LSQQKSTSSAQYPSP-------------------------------QSVLDHLYQEK 263

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
             SL+VEGGA+   SF+++ L D I +    +++ +G
Sbjct: 264 KQSLIVEGGASTLQSFLDAGLWDEIRVETGSLLVDKG 300


>gi|302345996|ref|YP_003814349.1| riboflavin biosynthesis protein RibD [Prevotella melaninogenica
           ATCC 25845]
 gi|302150238|gb|ADK96500.1| riboflavin biosynthesis protein RibD [Prevotella melaninogenica
           ATCC 25845]
          Length = 372

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 109/384 (28%), Positives = 156/384 (40%), Gaps = 101/384 (26%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
           M     D ++M   L+ +R    L   NP V  +IV K+G +IG G     G  HAEV A
Sbjct: 1   MKQEKTDEKYMRRCLQLARNGQQLAKPNPMVGAVIVSKEGRIIGEGYHVRCGKGHAEVNA 60

Query: 60  LEEAGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
                +E     R AT YV+LEPCSHYG++PPCA  II  G+RRVV    DP   V GRG
Sbjct: 61  FASVRKEDEALLREATVYVSLEPCSHYGKTPPCADLIISKGVRRVVCGCIDPFAEVQGRG 120

Query: 116 LQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD------------- 161
           ++ + + GI V   ++E E       ++T    KR ++ LK A ++              
Sbjct: 121 VKKIREAGIEVTVGVLEKECLELNKRFITYNTHKRPYVILKWAETESRLTNTPFNTPASP 180

Query: 162 ----------------------------------NMIGMAGCGSVP--------ITGFIS 179
                                             N   +A  G++P        I+   +
Sbjct: 181 SPLPLPHREGSNHRDTPNDASIINGSKDDVTTCTNNSAVAYIGNLPDKDYQPLIISTPFT 240

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           K  VH +RA++DAILVG  T   + P+LT R       SP +++L      S  +K  + 
Sbjct: 241 KMLVHKMRAENDAILVGKTTEELEQPQLTVR--EWSGPSPEKLVL-----TSQPTKAGEY 293

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           A  A V                                 L+ L      SL+VEGGA   
Sbjct: 294 ATPAEV---------------------------------LSHLYAEKKQSLIVEGGAKTL 320

Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323
            SF+++ L D I +  +   + EG
Sbjct: 321 QSFLDAGLWDEIRIESAPFTVNEG 344


>gi|300781124|ref|ZP_07090978.1| riboflavin biosynthesis protein RibD [Corynebacterium genitalium
           ATCC 33030]
 gi|300532831|gb|EFK53892.1| riboflavin biosynthesis protein RibD [Corynebacterium genitalium
           ATCC 33030]
          Length = 361

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/321 (30%), Positives = 144/321 (44%), Gaps = 53/321 (16%)

Query: 23  GLTSTNPSVACLIVKD-------------GIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67
           G TS NP V C+I ++               +I  G T   G  HAE+ AL+ A E+   
Sbjct: 28  GTTSPNPPVGCVIYREVEPVIVDDWDQAEPEIIATGGTEPAGGRHAEIVALDAAREKVGD 87

Query: 68  ---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
              RGA   VTLEPC+H GR+ PCA+ I+  GI +VV    DP+   SG G ++L + G+
Sbjct: 88  DGLRGACMLVTLEPCNHTGRTGPCAEAIVAAGIAKVVYIEPDPNPEASG-GAEYLRRHGV 146

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
            V    ++     L  +LT     R  +T K A + D  +      S  ITG I++  VH
Sbjct: 147 EVHH--KTYDVTGLAPWLTAVRHGRVSVTAKFAATLDGFVAAPDGSSQWITGPITREWVH 204

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
             R++ DAI++G GT LAD+P LT R     L E  P R+++                  
Sbjct: 205 EDRSRVDAIIIGTGTALADNPSLTARKADGSLAERQPRRVVVGTRE-------------- 250

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
                V E +  +  L F +             ++ L  L   G   ++VEGG  +  S 
Sbjct: 251 -----VPEGN--LTRLGFERYATP---------QEALDALWETGARHVIVEGGPTLMRSV 294

Query: 303 INSRLVDSIILYRSQIVIGEG 323
               +VD+I  Y + ++ G G
Sbjct: 295 FELGVVDAIHAYVAPMLFGAG 315


>gi|288803443|ref|ZP_06408875.1| riboflavin biosynthesis protein RibD [Prevotella melaninogenica
           D18]
 gi|288334053|gb|EFC72496.1| riboflavin biosynthesis protein RibD [Prevotella melaninogenica
           D18]
          Length = 365

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 107/377 (28%), Positives = 153/377 (40%), Gaps = 94/377 (24%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
           M     D ++M   L+ +R    L   NP V  +IV K+G +IG G     G  HAEV A
Sbjct: 1   MKQEETDEKYMRRCLQLARNGQLLAKPNPMVGAVIVSKEGRIIGEGYHVRCGKGHAEVNA 60

Query: 60  LEEAGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
                +E     R AT YV+LEPCSHYG++PPCA  II  G+RRVV    DP   V GRG
Sbjct: 61  FASVSKEDEALLREATVYVSLEPCSHYGKTPPCADLIISKGVRRVVCGCIDPFAEVQGRG 120

Query: 116 LQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIA----------------- 157
           ++ + + GI V   ++E E       ++T    KR ++ LK A                 
Sbjct: 121 VKKIREAGIEVTVGVLEKECLELNKRFITYNTHKRPYVILKWAEASSPSPLPLPQREGSN 180

Query: 158 --------------VSQDNMIGMAGCGSVPITGFI-----------------SKNQVHLL 186
                         ++ +N      C   P   +I                 +K  VH +
Sbjct: 181 HRDSPNNSEKVIANITIENRNNRIYCNYKPSVAYIGNLPGKDYQPLIISTPFTKMLVHKM 240

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA++DAILVG  T   + P+LT R    +   P     +P  KL L S+  K    A   
Sbjct: 241 RAENDAILVGKTTEELEQPQLTVR----EWSGP-----NPE-KLVLTSQPTKAGEYA--- 287

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
                                         ++L+ L      SL+VEGGA    SF+++ 
Sbjct: 288 ---------------------------TPAEVLSHLYAEKQQSLIVEGGAKTLQSFLDAG 320

Query: 307 LVDSIILYRSQIVIGEG 323
           L D I +  +   + +G
Sbjct: 321 LWDEIRIESAPFTVNKG 337


>gi|224067884|ref|XP_002302581.1| predicted protein [Populus trichocarpa]
 gi|222844307|gb|EEE81854.1| predicted protein [Populus trichocarpa]
          Length = 378

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 153/289 (52%), Gaps = 17/289 (5%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M   +  +R  +G TS NP V C+IVKDG ++G G     G PHAEV AL +A + A  
Sbjct: 30  YMRRCVELARKAIGCTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAEDLAEN 89

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           ATAYV+LEPC+HYGR+PPC++ +++  +++VV+ + DP+  V+ RG+Q L   GI V   
Sbjct: 90  ATAYVSLEPCNHYGRTPPCSEALVKAKVKKVVIGMIDPNPIVASRGVQRLRDAGINVVVG 149

Query: 130 MESE-GKIFLHAYLTRQVEKRSHITLKIAVSQD-NMIGMAGCGSVPITGFISKNQVHLLR 187
           +E E  K    A++ + +     +TL+ ++S + +++   G G     G+ S+     L 
Sbjct: 150 VEEELCKRLNEAFIHKMLTGSPFVTLRYSLSVNGHLVNQLGEGVTDTGGYYSQ-----LL 204

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DA+++   ++    P    +  G  +  P+ I++       +   ++     + V I
Sbjct: 205 QEYDAVILS-ASLTGSSPFPASQEPGANQ--PLWILMAGGPSSPIQIPLLTEEAASKVTI 261

Query: 248 VTE---NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            T+   +++P  +    KK I  +  D  +L  +L     RG+ S+L++
Sbjct: 262 FTDKEASEEPETS----KKGIETVVLDKINLNAILEYCKSRGLCSVLMD 306


>gi|307069511|ref|YP_003877988.1| riboflavin biosynthesis protein RibD [Candidatus Zinderia
           insecticola CARI]
 gi|306482771|gb|ADM89642.1| riboflavin biosynthesis protein RibD [Candidatus Zinderia
           insecticola CARI]
          Length = 346

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 151/318 (47%), Gaps = 14/318 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A+  S+  V  +S NPSV C I K+ +    G T + G  HAE+ AL+         
Sbjct: 1   MLKAIYLSKKAVFFSSPNPSVGCYIKKNIL----GYTKFKGYNHAEINALKNIKNNK-KI 55

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
             Y+TLEPC++ G +  C +++I   I ++ +C  D +  +    ++ L  K I ++  +
Sbjct: 56  NIYLTLEPCNYLGLTNSCLEYLININIYKIFICKLDNNKNIYNNSIKILKLKNIKINLGL 115

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +    K     Y  +   K+  I LKIA S DN I +    S  IT  IS+    L R +
Sbjct: 116 LNKIYKKINKGYFYKVKNKKPLIRLKIASSIDNKICLKNKKSKWITNKISRINNQLWRIK 175

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           S AI+ GIGT+L D+  +  R N  +      I++D   K+SL+S  +K      +II T
Sbjct: 176 SCAIITGIGTILKDNSFINIR-NFKKIKDIKNILIDTKLKISLNSNYLKNNY---IIIFT 231

Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
            + +       +K  I I          + K+++  +    +  +  E G ++ ++ I+ 
Sbjct: 232 NSKNKKKIRKLKKLGIKIFKIKLNNKKLNFKRIIEKISFLKINEIQFESGFSINNTLISL 291

Query: 306 RLVDSIILYRSQIVIGEG 323
             ++ I++Y S I++G+ 
Sbjct: 292 NKINEILIYLSPIILGKS 309


>gi|319948957|ref|ZP_08023062.1| riboflavin biosynthesis protein RibD [Dietzia cinnamea P4]
 gi|319437395|gb|EFV92410.1| riboflavin biosynthesis protein RibD [Dietzia cinnamea P4]
          Length = 288

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/256 (32%), Positives = 123/256 (48%), Gaps = 34/256 (13%)

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
           +TLEPC H+GR+ PC    +  G+ RVV  V DP+   +G G   L + G+ V R  + E
Sbjct: 1   MTLEPCDHHGRTGPCTARALAAGVARVVYAVSDPNPVAAG-GADTLRRAGVDVSRGDDDE 59

Query: 134 ----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
               G   L A+L RQ   R  +T K A S D  +  A   S  ITG +S++  H  R +
Sbjct: 60  VRAAGDGPLRAWLHRQAHGRPFVTWKYAASLDGRVAAADGSSRWITGPVSRHHAHARRQE 119

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            DA++VG GT+ ADDP LT RL+  +     P+R ++     LS     + T        
Sbjct: 120 IDALVVGTGTLTADDPALTARLDDGRPAPRQPLRAVM----GLS----AVPT-------- 163

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
                      A R  +    +   RD  + L +L    V  +LVEGG  +A +F+ + L
Sbjct: 164 ---------GAAVRGDDGRFRHLATRDPAEALAMLG--DVCHVLVEGGPRLAGAFLAAGL 212

Query: 308 VDSIILYRSQIVIGEG 323
           VD +  Y + +V+G G
Sbjct: 213 VDEVDAYIAPLVLGGG 228


>gi|227488843|ref|ZP_03919159.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227091265|gb|EEI26577.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 277

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/274 (32%), Positives = 124/274 (45%), Gaps = 46/274 (16%)

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           AL  AGE+ARGATAYVTLEPC+H GR+ PC+  ++E GI  VV    D     +  G  +
Sbjct: 2   ALRAAGEDARGATAYVTLEPCNHTGRTGPCSHALVEAGIATVVYLTPDTSTPEAAGGGDY 61

Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
           L   G+ V+ +  + G   L  +L  Q   R   T+K+A + D         S  ITG  
Sbjct: 62  LKSHGVEVEYLPVAVGA--LTPWLFAQRNHRPMFTVKVAHTIDGYAAALDGTSQWITGET 119

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILD----PHFKLSL 232
           ++   H  R++ DAILVG GT LAD+P LT R     L E+ P +I+      P      
Sbjct: 120 ARAYAHRDRSRRDAILVGTGTALADNPSLTARREDGSLYENQPDKIVFGSRPVPRDYHLY 179

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
           ++  I+   L  ++ +  ND                                     +LV
Sbjct: 180 ETGFIQVDTLEELVQLPYND-------------------------------------ILV 202

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           EGG  V  +   + LVD+I  Y +  V+G  GIP
Sbjct: 203 EGGPGVLSTLFTNDLVDTIHSYVASAVLG-AGIP 235


>gi|163841087|ref|YP_001625492.1| riboflavin biosynthesis protein [Renibacterium salmoninarum ATCC
           33209]
 gi|162954563|gb|ABY24078.1| riboflavin biosynthesis protein [Renibacterium salmoninarum ATCC
           33209]
          Length = 369

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 141/303 (46%), Gaps = 26/303 (8%)

Query: 23  GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEE-AGEEARGATAYVTLEPCS 80
           G+   NP V  +I+  DG ++  G  A  G PHAE  AL +    ++ GAT   TLEPCS
Sbjct: 17  GIRGANPLVGAVILGADGELLAAGHHAGAGTPHAEALALAQLEPSQSAGATLVCTLEPCS 76

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
           H GR+P C+Q II+ GI  VV   DDPD   +G   +  +    ++  +  +EG      
Sbjct: 77  HVGRTPACSQAIIDAGITTVVYAADDPDQNAAGGAARLRAAGITVISDVRAAEGHELNRR 136

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +     + R + ++ I  + D  I      S  I+   S    H  R ++ A+LVG GT+
Sbjct: 137 WFAAVRDSRPYTSVHIMQTIDGRIAAVDGSSQWISCPESLAAKHARRTRAHAMLVGTGTI 196

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
           LAD+P LT R              DP  +L    + ++ AL          +  V A A 
Sbjct: 197 LADNPRLTAR--------------DPDGQL-FARQPLRVAL---------GNREVPADAA 232

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
            + +   +     D  K    L  +GV  L+VEGGA V  +F+ + LVD +I+  +  V+
Sbjct: 233 IRGDGRWLQVKDHDALKAGRTLRAQGVDHLIVEGGAQVTAAFLRADLVDELIVSIAPTVL 292

Query: 321 GEG 323
           G G
Sbjct: 293 GSG 295


>gi|282877095|ref|ZP_06285937.1| riboflavin biosynthesis protein RibD [Prevotella buccalis ATCC
           35310]
 gi|281300777|gb|EFA93104.1| riboflavin biosynthesis protein RibD [Prevotella buccalis ATCC
           35310]
          Length = 326

 Score =  116 bits (290), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 153/358 (42%), Gaps = 64/358 (17%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M     D  +M   L+ ++    L   NP V  +IV  G ++G G     G  HAEV A 
Sbjct: 1   MNQEELDKMYMRRCLQLAKQGRALAKPNPMVGAVIVYQGRILGEGYHVRCGQAHAEVNAF 60

Query: 61  EEAGEEAR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
                        +T YV+LEPC H G++PPCA  II   ++RVV    DP  +V GRG+
Sbjct: 61  ASVRPADEPLLPQSTLYVSLEPCCHTGKTPPCADLIIRKHVKRVVCGCIDPFAQVHGRGV 120

Query: 117 QWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG---CGSV 172
           Q L   GI V   +++ E +     +    + +R +I LK A + +  +   G     S 
Sbjct: 121 QKLRDAGIDVTVGVLDEECRALNRQFNVYNMLERPYILLKWAQTINGFLDADGEPLALST 180

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
           P T  +    VH LRAQ DAILVG  T   + P LT R        P+R++L        
Sbjct: 181 PFTQML----VHRLRAQYDAILVGRVTDEREHPRLTVR--EWSGPDPLRLVLR------- 227

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
                                                 D   L +L+  L  + V SL+V
Sbjct: 228 --------------------------------------DGITLPQLMADLHQQHVQSLMV 249

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
           EGGA    SFI++ L D I +  S++++  GG  +P+    L    + ++R+ +  +V
Sbjct: 250 EGGAKTLQSFIDAGLWDEIRVETSRLLV-SGGTKAPV----LPAGLILLQREVYDGNV 302


>gi|302791619|ref|XP_002977576.1| hypothetical protein SELMODRAFT_106737 [Selaginella moellendorffii]
 gi|300154946|gb|EFJ21580.1| hypothetical protein SELMODRAFT_106737 [Selaginella moellendorffii]
          Length = 561

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 166/364 (45%), Gaps = 18/364 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           + FD+  M  A   +    G T+ +P+ AC+I +   V+G       G   AE+QA+E A
Sbjct: 6   AGFDSFHMLRAAELADGSAGHTAPHPNSACVIARSEKVVGEAFLYGQGTRCAEIQAVEMA 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE +RGATAY+ LEP   +G      + + + G+ RVVV +  P    SG+ +  L   G
Sbjct: 66  GELSRGATAYLNLEPGDCHGDD-TAIKALKQSGVARVVVGLQHPLKHHSGKAIAALRGLG 124

Query: 124 IIVDRMMESEGKIFLHAY----------LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP 173
           I VD + +     F  A+          L R         LK A++ D  I  +   +  
Sbjct: 125 IPVDVLEKHGDGTFKEAFRACQEVNAPLLYRATHGVPFSILKYAMTLDGKIAASTGHASW 184

Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233
           ++  +S+ +V   R +SDAI+VG  TV  D+P LT R  G   H P+R+++     L L+
Sbjct: 185 VSSKMSRQRVFETRGRSDAIIVGGNTVRRDNPRLTTRQEG--GHLPVRVVMSRTLNLPLE 242

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
             +   +    +++               + + ++  D    K ++     RG  S+L E
Sbjct: 243 LHLWDVSNAHTIVMTQRGARREFQRELVARGVEVVEFDFLTPKAVMDYCYERGFLSVLWE 302

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-GYLEK----NFMCVRRDYFGS 348
            G A++   + + ++  +I + +  +IG    P+P+ E G +E     N + V  +  G 
Sbjct: 303 CGGALSAPALAAGIIHKVIAFVAPKIIGGVTAPTPVGELGMVEMTQALNLLDVTFEQVGP 362

Query: 349 DVCL 352
           D+ +
Sbjct: 363 DMLV 366


>gi|302786796|ref|XP_002975169.1| hypothetical protein SELMODRAFT_102410 [Selaginella moellendorffii]
 gi|300157328|gb|EFJ23954.1| hypothetical protein SELMODRAFT_102410 [Selaginella moellendorffii]
          Length = 563

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 155/336 (46%), Gaps = 13/336 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           FD+  M  A   +    G T+ +P+ AC+I +   V+G       G   AE+QA+E AGE
Sbjct: 8   FDSFHMLRAAELADGSAGHTAPHPNSACVIARSEKVVGEAFLYGQGTRCAEIQAVEMAGE 67

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            +RGATAY+ LEP   +G      + + + G+ RVVV +  P    SG+ +  L   GI 
Sbjct: 68  LSRGATAYLNLEPGDCHGDD-TAIKALKQSGVARVVVGLQHPLKHHSGKAIAALRGLGIP 126

Query: 126 VDRMMESEGKIFLHAY----------LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
           VD + +     F  A+          L R   +     LK A++ D  I  +   +  ++
Sbjct: 127 VDVLEKHGDGTFKEAFRACQEVNAPLLYRATHEVPFSILKYAMTLDGKIAASTGHASWVS 186

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
             +S+ +V   R +SDAI+VG  TV  D+P LT R  G   H P+R+++     L L+  
Sbjct: 187 SKMSRQRVFETRGRSDAIIVGGNTVRRDNPRLTTRREG--GHLPVRVVMSRTLNLPLELH 244

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
           +   +    +++               + + ++  D    K ++     RG  ++L E G
Sbjct: 245 LWDVSNAHTIVMTQRGARREFQRELVTRGVEVVEFDFLTPKAVMDYCYERGFLTVLWECG 304

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
            A++   + + ++  +I + +  +IG    P+P+ E
Sbjct: 305 GALSAPALAAGIIHKVIAFVAPKIIGGVTAPTPVGE 340


>gi|256824048|ref|YP_003148008.1| riboflavin biosynthesis protein RibD [Kytococcus sedentarius DSM
           20547]
 gi|256687441|gb|ACV05243.1| riboflavin biosynthesis protein RibD [Kytococcus sedentarius DSM
           20547]
          Length = 461

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/269 (31%), Positives = 127/269 (47%), Gaps = 16/269 (5%)

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GATA VTLEPC+H GR+ PCA+ +++  I RVV+   DP    SG G + L   G+ +V 
Sbjct: 132 GATAVVTLEPCNHTGRTGPCAEALLDAEIARVVIAQSDPTPLASG-GAERLRTAGVEVVT 190

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++ESE       +       R  +TLK+A + D  +  A   S  ITG  ++  VH  R
Sbjct: 191 GVLESEATALNRWFTASARLGRPVVTLKLASTLDGRVAAADGTSQWITGGPARLDVHRQR 250

Query: 188 AQSDAILVGIGTVLADDPELTCRL------------NGLQEHSPMRIILDPHFKLSLDSK 235
           A + AI+VG GT LADDP+LT RL            +   E  P                
Sbjct: 251 ATAGAIVVGTGTALADDPKLTVRLPAAELAAPAVESDPAPEAGPAPSATPSTDAAPAPDA 310

Query: 236 IIKTALLAPV-IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
                   P+ ++V   + P  A  F       I     D  ++L +L  RG+  + +EG
Sbjct: 311 TTAPTPRQPLRVVVGTRELPASARVF-DDAAETISLRTHDPAEVLRVLSDRGIHHVWLEG 369

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           G  +A +F+ + LVD ++ Y +  ++G G
Sbjct: 370 GPTLAAAFLRAGLVDRLVHYLAPALLGAG 398


>gi|301055607|ref|YP_003793818.1| riboflavin biosynthesis protein contains N-terminal domain of RibD
           [Bacillus anthracis CI]
 gi|300377776|gb|ADK06680.1| riboflavin biosynthesis protein contains N-terminal domain of RibD
           [Bacillus cereus biovar anthracis str. CI]
          Length = 166

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/147 (40%), Positives = 89/147 (60%), Gaps = 2/147 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 3   DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +I+  ++RVV+   D +  VSG G + L + GI +
Sbjct: 63  AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHI 152
              ++E+E  + L+ Y     E  + I
Sbjct: 123 TTGVLEAEA-VLLNRYFFSLHENETSI 148


>gi|220912436|ref|YP_002487745.1| riboflavin biosynthesis protein RibD [Arthrobacter chlorophenolicus
           A6]
 gi|219859314|gb|ACL39656.1| riboflavin biosynthesis protein RibD [Arthrobacter chlorophenolicus
           A6]
          Length = 373

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 138/308 (44%), Gaps = 33/308 (10%)

Query: 23  GLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQAL---EEAGEEARGATAYVTLEP 78
           G    NP V  ++V  DG  +  G     G  HAE  A+    EAG +  G T  VTLEP
Sbjct: 29  GPRGANPLVGAVVVSPDGRELATGYHRGAGTAHAEADAVARAREAGVDLAGCTMVVTLEP 88

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138
           C+H GR+ PC + II  GI  VV  VDDP    +G G   L   GI V   + +   + L
Sbjct: 89  CNHVGRTGPCTEAIIAAGITDVVYAVDDPHDPAAG-GAATLRNAGISVRSGLAAAESLEL 147

Query: 139 H-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
           +  +     EKR   TL IA + D  I      S  I+   S    H +R++ DAILVG 
Sbjct: 148 NRRWFEAVAEKRPFTTLHIAQTLDGRIAAEDGTSQWISSPESLADNHGIRSRIDAILVGT 207

Query: 198 GTVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
            TV  D+P L  R          P+R +      + L       A+L         DD +
Sbjct: 208 QTVAVDNPRLNARDASGNPAARQPVRAV------MGLRDIPEHAAIL--------GDDGL 253

Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
                       ++   RD ++ LT L   G   ++VEGG+ +  +F+ + LVD +I+Y 
Sbjct: 254 -----------AVHLPTRDPREALTTLYASGTRHVMVEGGSRILSAFLTAGLVDELIVYL 302

Query: 316 SQIVIGEG 323
           +  ++G G
Sbjct: 303 APTLLGSG 310


>gi|308803240|ref|XP_003078933.1| COG1985: Pyrimidine reductase, riboflavin biosynthesis (ISS)
           [Ostreococcus tauri]
 gi|116057386|emb|CAL51813.1| COG1985: Pyrimidine reductase, riboflavin biosynthesis (ISS)
           [Ostreococcus tauri]
          Length = 207

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/101 (57%), Positives = 73/101 (72%), Gaps = 2/101 (1%)

Query: 28  NPSVACLIV--KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRS 85
           NP V C++V  +  +V+GRG     G PHAEV AL  AGE ARGATAYVTLEPC+H+GR+
Sbjct: 80  NPLVGCVVVDPRADVVVGRGFHPRAGEPHAEVFALRAAGELARGATAYVTLEPCNHFGRT 139

Query: 86  PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           PPCA+ +++ G++RVVV   DPD RVSG G+Q L   GI V
Sbjct: 140 PPCARALVDAGVKRVVVGFVDPDPRVSGGGIQTLLDAGIDV 180


>gi|329891051|ref|ZP_08269394.1| riboflavin biosynthesis protein ribD [Brevundimonas diminuta ATCC
           11568]
 gi|328846352|gb|EGF95916.1| riboflavin biosynthesis protein ribD [Brevundimonas diminuta ATCC
           11568]
          Length = 209

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 87/153 (56%), Gaps = 4/153 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DA FM  A+  +   +G T  NP+V C++VKDG+V+    TA GG PHAE QA+ EAGE 
Sbjct: 7   DAVFMRRAIDLALSRMGETWPNPAVGCVLVKDGVVLAEAATAPGGRPHAEEQAVPEAGEA 66

Query: 67  ARGATAYVTLEPCS--HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            +GATAYVTLEPC     GR   CA F+ E G+ RVV+   DP    SGRG + L   G+
Sbjct: 67  VKGATAYVTLEPCGARSSGRK-SCAHFLAEAGVERVVIAALDPSPFASGRGTERLRHSGL 125

Query: 125 IVDR-MMESEGKIFLHAYLTRQVEKRSHITLKI 156
            V+  ++  E  +    +L R    R  + + I
Sbjct: 126 TVETGLLCEEASVLSEGFLHRLETGRPMVRVSI 158


>gi|307328879|ref|ZP_07608049.1| riboflavin biosynthesis protein RibD [Streptomyces violaceusniger
           Tu 4113]
 gi|306885544|gb|EFN16560.1| riboflavin biosynthesis protein RibD [Streptomyces violaceusniger
           Tu 4113]
          Length = 297

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 90/163 (55%), Gaps = 3/163 (1%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE 61
            +S +   M  A+  S   +G TS NP V C+I+ +DG+ +G G     G  HAEV AL 
Sbjct: 2   ATSNELTAMRRAIAISAQGLGTTSPNPPVGCVILDRDGVPVGEGYHLRKGDHHAEVNALT 61

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AGE A G TA VTLEPC+H+GR+PPC Q +I+  + RV++ V DP  R  G G   L Q
Sbjct: 62  AAGERAEGGTAVVTLEPCNHHGRTPPCRQALIDAKVSRVLMAVMDPTSRGEG-GAAVLEQ 120

Query: 122 KGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163
            GI V+R ++E E  + L  +L      R HIT    V  D  
Sbjct: 121 AGIEVERGVLEQEALLVLGPWLHSLRTGRPHITWAYTVGADGF 163


>gi|256378033|ref|YP_003101693.1| riboflavin biosynthesis protein RibD [Actinosynnema mirum DSM
           43827]
 gi|255922336|gb|ACU37847.1| riboflavin biosynthesis protein RibD [Actinosynnema mirum DSM
           43827]
          Length = 341

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 101/300 (33%), Positives = 140/300 (46%), Gaps = 30/300 (10%)

Query: 28  NPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86
           NP V C L+  DG V+  G     G  HAE  AL EAG  ARG TA VTLEPC+H GR+ 
Sbjct: 25  NPRVGCVLLADDGTVVAEGHHRGAGTAHAEADALAEAGAAARGTTAVVTLEPCNHTGRTG 84

Query: 87  PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQ 145
           PCA+ ++E G+RRVV    DP+   +G G + L   GI V+  +M    +    A++   
Sbjct: 85  PCARALVEAGVRRVVFAQSDPNPVATG-GTRTLRDAGIEVEHGLMADRARALNRAWVFGV 143

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
              R  +T K A S D     A   S  I+   ++  VH LRA  D +LVG  T + DDP
Sbjct: 144 EHGRPLVTWKFAASLDGRSAAADGTSRWISNSAARADVHRLRAGCDVVLVGAETAVVDDP 203

Query: 206 ELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
            LT R   +    H P+R +L                         E + P     F   
Sbjct: 204 RLTARGPDDAPLAHQPLRAVLG------------------------ERELPPTLRLF-DG 238

Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           +  +     RD +  L  L   G   + +EGG  VA +F+ + LVD I+ Y + +++G G
Sbjct: 239 SAEVAQLRTRDPRAALAELFELGRRHVFLEGGPTVAAAFLRAGLVDEIVAYVAPVLLGAG 298


>gi|145346176|ref|XP_001417569.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577796|gb|ABO95862.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 147

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/126 (50%), Positives = 82/126 (65%), Gaps = 3/126 (2%)

Query: 28  NPSVACLIV--KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRS 85
           NP V C++V  ++ +V+G G     G PHAEV AL  AGE ARGATAYVTLEPC+HYGR+
Sbjct: 19  NPRVGCVVVDAREDVVVGEGYHPKAGEPHAEVFALRAAGELARGATAYVTLEPCNHYGRT 78

Query: 86  PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA-YLTR 144
           PPCA+ +++ G+ RVVV   DPD RVSG G+Q L   GI V    E      ++A ++ R
Sbjct: 79  PPCARALVDAGVARVVVGFIDPDPRVSGGGIQTLLDAGIEVAVGCEEALCREINADFIAR 138

Query: 145 QVEKRS 150
           QV  R 
Sbjct: 139 QVAARD 144


>gi|126640314|ref|YP_001083298.1| hypothetical protein A1S_0221 [Acinetobacter baumannii ATCC 17978]
          Length = 288

 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 139/264 (52%), Gaps = 29/264 (10%)

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMES 132
           +TLEPC+HYGR+PPCA+ +++  +++VVV   DP+  V+G+G+Q L   GI V+  + E 
Sbjct: 1   MTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILKNAGIEVEIGICED 60

Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
                   +L        ++ LK+A S D    MA   S  ITG  ++  V   RA S A
Sbjct: 61  LAAQLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAARQDVQHWRAISGA 120

Query: 193 ILVGIGTVLADDPELTCRLNGLQEHS--------PMRIILDPHFKLSLDSKIIKTALLAP 244
           ++ GI TV+ DD    C+LN    H+        P R+ILD   +L L +KI+       
Sbjct: 121 VITGIDTVIVDD----CQLNVRSLHNIDIETVAQPKRVILDRRGRLPLTAKIL------- 169

Query: 245 VIIVTENDDPVLALA-FRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAH 300
                EN + V+ +  +R++  ++ +I  + + LK LL  L  +  +  +LVE GA ++ 
Sbjct: 170 -----ENPETVMVMGPYRQELADLGVIQLEIQPLKTLLQTLSKQYQIYDVLVEAGATLST 224

Query: 301 SFINSRLVDSIILYRSQIVIGEGG 324
           +F+   LVD +I Y +  ++G+  
Sbjct: 225 AFLQEGLVDEMISYVAPTLLGQSA 248


>gi|242065054|ref|XP_002453816.1| hypothetical protein SORBIDRAFT_04g018500 [Sorghum bicolor]
 gi|241933647|gb|EES06792.1| hypothetical protein SORBIDRAFT_04g018500 [Sorghum bicolor]
          Length = 522

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 143/311 (45%), Gaps = 22/311 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK--------DGIVIGRGVTAYGGCPHAEVQ 58
           DA  +  A   +    GLTS +P+  C+I +        D  V+G G     G P AE+ 
Sbjct: 54  DALLLRRAADVADRSAGLTSPHPNFGCVIARPQPNTDSTDSWVVGEGFLYAQGTPCAELL 113

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           A +EAGE A G+TAY+ LEP   +G +      +++ GI RVVV +  P   + G+ +Q 
Sbjct: 114 AAQEAGEHACGSTAYLNLEPGDCFGDNTAVGS-LVQAGITRVVVGLRHPLKHLRGKAIQA 172

Query: 119 LSQKGIIVDRMMES-EGKIFLHA----------YLTRQVEKRSHITLKIAVSQDNMIGMA 167
           L  +GI VD + E  + K+F  A           L R         LK A++ D  I  +
Sbjct: 173 LRSEGIQVDVVGEDLQSKLFEEALKSCLTVNAPLLYRAAFHVPFSVLKYAMTADGKIAAS 232

Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPH 227
              +  I+G  S+ +V  LR +SDA++VG  TV  DDP LT R   ++ H P+RI++   
Sbjct: 233 SGHASWISGKASRGRVFELRGRSDAVIVGGNTVRFDDPRLTAR--HVKGHVPVRIVMSQS 290

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
             L  ++ +        ++                K + ++  D  + + +++    RG 
Sbjct: 291 LNLPDEANLWNVNDAYTIVATQRGARRDFQKKLAMKGVEVVEFDMLNPRNVMSYCYDRGY 350

Query: 288 TSLLVEGGAAV 298
            ++L E G  +
Sbjct: 351 LAVLWECGGTL 361


>gi|294142852|ref|YP_003558830.1| riboflavin-specific deaminase [Shewanella violacea DSS12]
 gi|32562925|dbj|BAC79238.1| putative riboflavin deaminase [Shewanella violacea]
 gi|293329321|dbj|BAJ04052.1| riboflavin-specific deaminase, putative [Shewanella violacea DSS12]
          Length = 143

 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 62/140 (44%), Positives = 84/140 (60%), Gaps = 1/140 (0%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           FD +FM  AL+ S+  +     NP V C++V D  VI  G T   G  HAE++AL     
Sbjct: 3   FDKKFMLRALKLSQTALPECQPNPPVGCVLVLDDQVIAEGYTQKIGGNHAEMEALNAYDG 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
                TAYVTLEPCS  GR+P CA  +++ GI+RVVV + DPD+R +G+G+Q L ++GI 
Sbjct: 63  SMGLVTAYVTLEPCSFVGRTPACASTLVKSGIKRVVVAILDPDLRNNGKGIQTLEKEGIK 122

Query: 126 VDRMMES-EGKIFLHAYLTR 144
           VD  + S E   FL  YL +
Sbjct: 123 VDIGVASKEVSEFLSPYLGK 142


>gi|229526073|ref|ZP_04415477.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
           cholerae bv. albensis VL426]
 gi|229336231|gb|EEO01249.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
           cholerae bv. albensis VL426]
          Length = 141

 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 62/135 (45%), Positives = 81/135 (60%), Gaps = 1/135 (0%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  S++ +     NP V C++VK G ++  G T   G  HAEVQALE    +    
Sbjct: 6   MLRALEVSKFALPNCLPNPPVGCVLVKGGSIVAEGFTQKIGGNHAEVQALEAYSGDMDSV 65

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129
           TAYVTLEPCS  GR+P CA  +++ GI+ VVV + DPD+R SGRG+Q L Q GI VD  +
Sbjct: 66  TAYVTLEPCSFIGRTPACAATLVKSGIKHVVVSILDPDLRNSGRGIQILEQAGIQVDIGL 125

Query: 130 MESEGKIFLHAYLTR 144
             S+   FL  YL +
Sbjct: 126 CSSQVSAFLDPYLGK 140


>gi|291334222|gb|ADD93888.1| predicted diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [uncultured marine bacterium MedDCM-OCT-S08-C1463]
          Length = 348

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 142/312 (45%), Gaps = 33/312 (10%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR--------GATAYVTLEPCSHY 82
           V C+IVK+  +IGRG     G  HAE+ A+ +  E+ +        G+  +VTLEPCS  
Sbjct: 27  VGCVIVKENRIIGRGFYEKYGGSHAEINAINDVKEKYKKNYLSKLSGSDLFVTLEPCSKK 86

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
           G++  C   + +   +R+VV   DP    +  G+  L   G  +  +   + +    ++ 
Sbjct: 87  GKTGACVNELKKYDFKRIVVGTKDP----TQNGINNLQSAGYELKNLNNQQCQALNESFF 142

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
            +    +  +  K+A+S D+    A      ITG  ++N V  LRA++D IL G GT+  
Sbjct: 143 HKVKSNKPFVRAKVAMSSDHKSVFASKQRKWITGIPARNNVQTLRAEADIILTGAGTINE 202

Query: 203 DDPELTCRLNGLQEHS----PMRIILD---------PHFKLSLDSKIIKTALLAPVIIVT 249
           D+P +  R   +  +     P R +           P FKL     ++ +    P +   
Sbjct: 203 DNPSMNVRSKKIIANKNFVQPERYVFSNSLNLNWSAPFFKLPGKKVVVTSKKNLPKLPQG 262

Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
            ND  +++L   KKN N +  +  D  K ++ L    V ++L+E G  +  SF +  L+D
Sbjct: 263 INDISLMSL---KKNSNSLSSE--DFIKRISKL---NVNNILIEAGPRLLGSFGDYGLID 314

Query: 310 SIILYRSQIVIG 321
             I Y S   +G
Sbjct: 315 EYIFYISPEKLG 326


>gi|212702196|ref|ZP_03310324.1| hypothetical protein DESPIG_00207 [Desulfovibrio piger ATCC 29098]
 gi|212674401|gb|EEB34884.1| hypothetical protein DESPIG_00207 [Desulfovibrio piger ATCC 29098]
          Length = 380

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 101/352 (28%), Positives = 164/352 (46%), Gaps = 40/352 (11%)

Query: 8   ARFMSAALRFS---RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
           A FM  AL  +   RW       NP+V  ++V+DG V+ RG     G PHAEV+ L +A 
Sbjct: 7   APFMREALTLAENGRWSA---CPNPTVGAVLVRDGQVVARGWHHAAGQPHAEVECLRDAQ 63

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
             G +    T  VTLEPC+HYG++PPC++ ++  GI+RVV+ + DP  + +G G + L  
Sbjct: 64  RQGIDPAQCTLVVTLEPCNHYGKTPPCSEAVLAAGIKRVVIGLYDPTPKAAG-GAERLRA 122

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            G+ ++  + E E +  +  +L  Q + R ++ LK+A + D  I      S  ++   S+
Sbjct: 123 AGVEVIGPVCEQECRDQVADFLAWQ-QGRPYVILKMAATMDGRIATRTGHSRWVSSEGSR 181

Query: 181 NQVHLLRAQSDAILVGIG-----------TVLADDPELTCRLNGLQ-EHSPMRIIL---- 224
             VH LRA       GIG           T  AD+P LT R+ G   E  P+  +L    
Sbjct: 182 ALVHRLRA-------GIGRAGGAVLVGGGTFRADNPCLTARIPGETVEQQPLACVLTSRL 234

Query: 225 -DPHFKLSLDSKIIKTA--LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
            +P   + L  +    A  L +P    +     +  +  R   +      C D   +  +
Sbjct: 235 PNPAGDIHLLKERPHQAVFLCSPAAAASTAAHALRQMGVRVLALGPGQRGCPDFPAMFHM 294

Query: 282 LVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
           L        +L EGG  +A S + +   D  +L+ +  ++G+    +PL +G
Sbjct: 295 LYEELHCPYVLCEGGGHLALSLLEAGFADEFLLHLAPRILGDNEA-APLFDG 345


>gi|215693340|dbj|BAG88722.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 404

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 161/316 (50%), Gaps = 22/316 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  ++   +  +R   G TS NP V C++V+ G V+G G     G PHAEV AL +A + 
Sbjct: 86  DGVYIRWCVELARKAAGHTSPNPMVGCVVVRGGRVVGEGFHPEAGQPHAEVFALRDARDL 145

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A  ATAYV+LEPC+HYGR+PPC + +I   ++ VVV + DP+  V+ +G++ L   GI V
Sbjct: 146 AENATAYVSLEPCNHYGRTPPCTEALINAKLKDVVVGMTDPNPIVASKGIERLQSAGIDV 205

Query: 127 DRMMESEG--KIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISKNQV 183
              ME E   +    AY+   +  ++  TL+  +S +  ++   G G+    G+ S+   
Sbjct: 206 RVCMEEEALCRNLNEAYIHCMLTGKAFATLRTTLSVNGVVVNQIGTGADQPGGYYSQ--- 262

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
            LL+     I+ GI   +   P  T    G ++  P+ II+       L+ + ++    +
Sbjct: 263 -LLKEYDGVIISGISVNMTTLP--TSHEAGAKQ--PLYIIIAQGGNSQLNIQFLREECAS 317

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV---EGGAAVAH 300
             +++T  D PV     +   + ++  D   L+ +L IL  RG+ S+LV   E G   A+
Sbjct: 318 EAVVLT--DSPV---TVKPPGVEVLVLDRMSLEFILEILAQRGLCSVLVDFREAGGDFAY 372

Query: 301 ---SFINSRLVDSIIL 313
              +F   +LV  +++
Sbjct: 373 LLKNFQEEKLVQKVVV 388


>gi|229006420|ref|ZP_04164086.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides Rock1-4]
 gi|228754830|gb|EEM04209.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides Rock1-4]
          Length = 278

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 121/234 (51%), Gaps = 4/234 (1%)

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
           ++RVV+   D +  VSG G + L + GI +   ++E E       +      K   +T+K
Sbjct: 1   MKRVVIATLDCNPLVSGSGAKRLQKAGISVTTSVLEEEATALNRYFFHYMKTKLPFVTIK 60

Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215
            A+S D  I      S  ITG +++  VH  R   DAIL+G+ TV+AD+P LT RL    
Sbjct: 61  TAMSLDGKIATTTGESKWITGEVARTDVHQYRHTHDAILIGVNTVIADNPSLTTRLPNGG 120

Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-- 273
           +H P+RIILD H +  L S +I   +    IIV ++ +      +  + ++++       
Sbjct: 121 KH-PIRIILDTHLRTPLSSHVITDEMAPTWIIVGKDVNKEKIAGYESQAVSVLQMKTSQI 179

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           +++ LL +L  + + SL VEGG +V  SF+ ++  + I+ Y S  +IG    P+
Sbjct: 180 EIRDLLLLLGEKQILSLFVEGGQSVHASFLETKCFNEIVTYISPKLIGGKDAPT 233


>gi|167914873|ref|ZP_02501964.1| riboflavin biosynthesis protein [Burkholderia pseudomallei 112]
          Length = 112

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/104 (50%), Positives = 65/104 (62%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D   M+ ALR +   +  T  NP V C+I +    +G G     G PHAEV AL EA
Sbjct: 5   SDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALREA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           GE ARGATAYVTLEPC+H+GR+PPCA  ++  G+ RVV+   DP
Sbjct: 65  GERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDP 108


>gi|330447671|ref|ZP_08311319.1| cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491862|dbj|GAA05816.1| cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 146

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/137 (44%), Positives = 78/137 (56%), Gaps = 1/137 (0%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  AL  S   +     NP V C++VKDG ++  G T   G  HAE  AL   GE    
Sbjct: 10  FMMRALLLSHQALPACRPNPPVGCVLVKDGQIVSEGFTQRPGHHHAEAMALANYGESLDD 69

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
            TAYVTLEPCS  GR+P CA  ++E GI++VVV   DPD R SG+G+  L Q G+ V+  
Sbjct: 70  VTAYVTLEPCSFVGRTPSCAHTLVERGIKKVVVATLDPDTRNSGKGIAVLEQAGVEVEVG 129

Query: 129 MMESEGKIFLHAYLTRQ 145
           + E+E   F+  YL R 
Sbjct: 130 LCENEVLDFIEPYLIRN 146


>gi|153833299|ref|ZP_01985966.1| riboflavin biosynthesis protein RibD [Vibrio harveyi HY01]
 gi|148870435|gb|EDL69356.1| riboflavin biosynthesis protein RibD [Vibrio harveyi HY01]
          Length = 159

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/137 (43%), Positives = 83/137 (60%), Gaps = 1/137 (0%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +FM  AL  SR  +     NP V C++VKDG ++  G T   G  HAEV+AL+    +  
Sbjct: 22  QFMLRALEVSRNALPACQPNPPVGCVLVKDGEIVSEGHTQAIGGNHAEVEALKAYNGDLS 81

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127
             TAYVTLEPCS  GR+P CA+ ++ CGI++VVV + DPD+R +GRG+  L + G+ V+ 
Sbjct: 82  DVTAYVTLEPCSFVGRTPACAKTLVTCGIKKVVVAMLDPDLRNAGRGIDILKEGGVEVEI 141

Query: 128 RMMESEGKIFLHAYLTR 144
            +   E   FL  YL +
Sbjct: 142 GLCGEEVSAFLTPYLGK 158


>gi|302381385|ref|YP_003817208.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302192013|gb|ADK99584.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 209

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/147 (44%), Positives = 85/147 (57%), Gaps = 4/147 (2%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  ++ D   M  A+  +   +G T  NP+V C+IVKDG+V+    TA GG PHAE QA+
Sbjct: 1   MSDAAADQVHMRRAIDLALARMGETWPNPAVGCVIVKDGMVLSEAATAPGGRPHAEEQAV 60

Query: 61  EEAGEEARGATAYVTLEPCS--HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
             AG    GATAYVTLEPC     GR+  CAQF+ E GI RVVV   DP    SGRG + 
Sbjct: 61  PAAGPGVAGATAYVTLEPCGARSSGRA-SCAQFLAEAGISRVVVAALDPSPFASGRGTER 119

Query: 119 LSQKGIIVDR-MMESEGKIFLHAYLTR 144
           L Q G+ V+  +M+ E  +    +L R
Sbjct: 120 LRQAGLRVETGLMKDEAGVLSEGFLHR 146


>gi|254420634|ref|ZP_05034358.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Brevundimonas sp. BAL3]
 gi|196186811|gb|EDX81787.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Brevundimonas sp. BAL3]
          Length = 209

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/147 (43%), Positives = 83/147 (56%), Gaps = 4/147 (2%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  +  D  FM+ A+  +   +G T  NP+V C+IVKDG +I +  TA GG PHAE QA+
Sbjct: 1   MSWTDADRAFMAQAIDLATARMGETWPNPAVGCVIVKDGRIIAQAATAPGGRPHAEEQAV 60

Query: 61  EEAGEEARGATAYVTLEPCS--HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
             AG E  GAT YVTLEPC     GR   CA F+ E G+ RVV+   DP    +GRG + 
Sbjct: 61  PAAGAEIEGATVYVTLEPCGARSSGRQ-SCAHFLTEAGVERVVIACLDPSPFAAGRGTER 119

Query: 119 LSQKGIIVDR-MMESEGKIFLHAYLTR 144
           L  KG+ V+  +M  EG      +L R
Sbjct: 120 LRAKGLTVETGLMCDEGAALCEGFLHR 146


>gi|27365734|ref|NP_761262.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
           vulnificus CMCP6]
 gi|27361883|gb|AAO10789.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
           vulnificus CMCP6]
          Length = 141

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/135 (44%), Positives = 80/135 (59%), Gaps = 1/135 (0%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  S++ +     NP V C++VK+G ++  G T   G  HAEVQALE    +    
Sbjct: 6   MLRALEVSKFALPNCLPNPPVGCVLVKEGSIVAEGFTQKIGGNHAEVQALEAYSGDMDSV 65

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129
           TAYVTLEPCS  GR+P CA  +++ GI+ VVV + DPD R  GRG+Q L Q G+ VD  +
Sbjct: 66  TAYVTLEPCSFIGRTPACAATLVKSGIKHVVVSILDPDPRNGGRGIQILEQAGVQVDIGL 125

Query: 130 MESEGKIFLHAYLTR 144
             S+   FL  YL +
Sbjct: 126 CSSQVSAFLEPYLGK 140


>gi|218888179|ref|YP_002437500.1| riboflavin biosynthesis protein RibD [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218759133|gb|ACL10032.1| riboflavin biosynthesis protein RibD [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 419

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/218 (34%), Positives = 118/218 (54%), Gaps = 9/218 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
           FM  A+  +R      + NP+V  ++V+DG V+ RG     G PHAEV+ L +A   G +
Sbjct: 10  FMREAIALARRGRWRAAPNPTVGAVLVRDGQVVARGYHTACGMPHAEVECLRDAAANGVD 69

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
               T  VTLEPC+H+G++PPC+Q ++  GIR VVV + DP+    G G ++L Q G+ V
Sbjct: 70  PAACTLMVTLEPCNHHGKTPPCSQAVLAAGIRHVVVGMADPNPVARG-GAEFLRQHGVRV 128

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  + E + +  +  ++T +     ++ LK+A + D  I      S  I+   S+ +VH 
Sbjct: 129 DMGVCEQDCRDLVADFVTWKKTDLPYVILKLASTLDGRIATRAGHSQWISCAASRRRVHA 188

Query: 186 LR----AQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219
           +R        A+LVG GT+ AD+P LT R     +  P
Sbjct: 189 IRAGAGHAGGAVLVGGGTLFADNPLLTARCGDFSDAFP 226


>gi|152990173|ref|YP_001355895.1| riboflavin biosynthesis protein RibG [Nitratiruptor sp. SB155-2]
 gi|151422034|dbj|BAF69538.1| riboflavin biosynthesis protein RibG [Nitratiruptor sp. SB155-2]
          Length = 333

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 119/237 (50%), Gaps = 36/237 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
           ++D  FM  AL+ +  + GLT  NP+V  ++  +  +I +G     G PHAEV+A++ A 
Sbjct: 3   NYDNFFMDIALQEAWRYQGLTYPNPAVGAVVAINNCIISKGAHTKAGAPHAEVEAIKNAY 62

Query: 64  ----GEEA----------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
               G+E                         AT YVTLEPC+H+G++PPC+  I + G 
Sbjct: 63  YTLTGDEHVLHLQDALELHEYLVANAKDLFHNATIYVTLEPCNHFGKTPPCSLLIKKLGF 122

Query: 98  RRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKI 156
           +RVV+ + DP+   +G G  +L   GI VD  + E   K+ +  +L  Q    +    K+
Sbjct: 123 QRVVIALKDPNEEAAG-GASFLRNCGIEVDIGIQEERAKVLIEPFL--QWRSSTFTFFKL 179

Query: 157 AVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213
           A + + +I     G + I+G  S+  VH LR + + +++G  TV  D P L  R+ G
Sbjct: 180 AQAFNGVID----GGI-ISGAESRKYVHALRDRIELLVIGGNTVRTDRPILDARMVG 231


>gi|269961115|ref|ZP_06175483.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834066|gb|EEZ88157.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 159

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 59/137 (43%), Positives = 82/137 (59%), Gaps = 1/137 (0%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +FM  AL  SR  +     NP V C++VKDG ++  G T   G  HAEV+AL+    +  
Sbjct: 22  QFMLRALEVSRNALPACQPNPPVGCVLVKDGEIVSEGHTQAIGGNHAEVEALKAYNGDLS 81

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127
             TAYVTLEPCS  GR+P CA+ ++ CGI++VVV + DPD R +GRG+  L + G+ V+ 
Sbjct: 82  DVTAYVTLEPCSFVGRTPACAKTLVTCGIKKVVVAMLDPDPRNAGRGIDILKEGGVEVEI 141

Query: 128 RMMESEGKIFLHAYLTR 144
            +   E   FL  YL +
Sbjct: 142 GLCGEEVSAFLTPYLGK 158


>gi|126730233|ref|ZP_01746044.1| riboflavin biosynthesis protein RibD [Sagittula stellata E-37]
 gi|126708966|gb|EBA08021.1| riboflavin biosynthesis protein RibD [Sagittula stellata E-37]
          Length = 89

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 50/86 (58%), Positives = 63/86 (73%)

Query: 3  VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
          +++ DARFM+ AL   R  +G T  NP+V CLIV+ G V+GRG T   G PHAE QAL  
Sbjct: 1  MTASDARFMAQALALGRRGMGQTWPNPAVGCLIVRKGRVVGRGWTQPSGRPHAETQALAM 60

Query: 63 AGEEARGATAYVTLEPCSHYGRSPPC 88
          AG+ ARGAT YVTLEPC+H+G++PPC
Sbjct: 61 AGDAARGATVYVTLEPCAHHGKTPPC 86


>gi|325268454|ref|ZP_08135084.1| riboflavin biosynthesis protein RibD [Prevotella multiformis DSM
           16608]
 gi|324988982|gb|EGC20935.1| riboflavin biosynthesis protein RibD [Prevotella multiformis DSM
           16608]
          Length = 380

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 108/362 (29%), Positives = 156/362 (43%), Gaps = 37/362 (10%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
           M     D  +M   L+ +R    L   NP V  +IV KDG +IG G     G  HAEV A
Sbjct: 1   MKQEETDEIYMRRCLQLARNGQQLAKPNPMVGAVIVSKDGRIIGEGYHVRCGEGHAEVNA 60

Query: 60  LEEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
                +E       AT YV+LEPCSHYG++PPCA  II  G+RRVV    DP  +V GRG
Sbjct: 61  FASVKKEEEALLHEATVYVSLEPCSHYGKTPPCADLIISKGVRRVVCGCIDPFSKVQGRG 120

Query: 116 LQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIA----VSQDNMIG----- 165
           ++ L + GI V   ++E E       ++T     R ++ LK A    V+ + +       
Sbjct: 121 VKRLREAGIDVTVGVLEKECLELNKRFVTYNTHHRPYVILKWAQTKRVTTNTLFNTPTNT 180

Query: 166 MAGCGSVPITGFISKNQVHLLRAQSD--AILVGIGTVLADDPELTC-----RLNGLQEH- 217
           ++   ++P    +   +    R   D  +I+ G    + D  + T       L G   H 
Sbjct: 181 LSNTPAIPSPSPLPHREGSEHRDSPDDLSIINGSQDEITDREKKTSAAYIGNLPGRDYHP 240

Query: 218 ----SPMRIILDPHFKLSLDSKII-KTA--LLAPVIIVTENDDP---VLALAFRKKNINI 267
               +P   +L    +   D+ ++ KT   L  P + V E   P    L L    K    
Sbjct: 241 LIISTPFTKMLVHKLRAENDAILVGKTTEELEHPQLTVREWSGPNPEKLVLTSHPKREG- 299

Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
              +     + L+ L      SL+VEGGA    SF+ + L D I +  +   IGEG    
Sbjct: 300 ---EYATPAEALSHLYAEKKQSLIVEGGAKTLQSFLEAGLWDEIRIETAPFTIGEGIEAP 356

Query: 328 PL 329
           PL
Sbjct: 357 PL 358


>gi|54303332|ref|YP_133325.1| putative riboflavin biosynthesis protein RibD [Photobacterium
           profundum SS9]
 gi|46916762|emb|CAG23525.1| Putative riboflavin biosynthesis protein RibD [Photobacterium
           profundum SS9]
          Length = 141

 Score =  109 bits (272), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 59/136 (43%), Positives = 82/136 (60%), Gaps = 1/136 (0%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  AL+ S+  +   + NP V C++VK+  ++  G T   G  HAEVQAL         
Sbjct: 5   FMLRALQISKSALPDCTPNPPVGCVLVKNDFIVSEGFTQAIGGNHAEVQALNSYSGSTEN 64

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            TAYVTLEPCS+ GR+P CA  +I  GI+RVVV + DPD R SG+G++ L Q G+ V+  
Sbjct: 65  ITAYVTLEPCSYVGRTPACANTLINSGIKRVVVSMLDPDPRNSGKGVKILEQAGVQVEIG 124

Query: 130 MESEGKI-FLHAYLTR 144
           + ++  I FL  YL +
Sbjct: 125 LCNDQVIHFLAPYLGK 140


>gi|75761017|ref|ZP_00741020.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|74491503|gb|EAO54716.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase  /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
          Length = 284

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 120/233 (51%), Gaps = 4/233 (1%)

Query: 98  RRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKI 156
           +RVV+   D +  VSG G + L +  I +   ++E+E  +    +      KR  +T+K 
Sbjct: 8   KRVVIATLDCNPLVSGNGKRRLEEARIEVTTGVLEAEAVLLNRYFFHYMKTKRPFVTIKT 67

Query: 157 AVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE 216
           A+S D  I      S  ITG  ++  VH  R   DAILVG+ TV+AD+P LT R+    +
Sbjct: 68  AMSLDGKIATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGK 127

Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--D 274
           H P+R++LD H +    S +I   L    IIV ++       ++  KNI I   + +  +
Sbjct: 128 H-PIRVVLDTHLRTPPSSHVITDGLAPTWIIVGKDVKKEKISSYNSKNIAIFQMETKHIE 186

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           ++ LL+ L  + + SL VEGG ++  SF+ +   + I+ Y S  +IG    P+
Sbjct: 187 IEDLLSFLGEKQILSLFVEGGQSIHASFLKTNNFNEIVTYISPKLIGGKDAPT 239


>gi|315499926|ref|YP_004088729.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Asticcacaulis
           excentricus CB 48]
 gi|315417938|gb|ADU14578.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Asticcacaulis
           excentricus CB 48]
          Length = 216

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 99/178 (55%), Gaps = 3/178 (1%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R  +TLK+A + D  I      S  ITG  ++  VH LRA  DA+LVGI TVL DDPELT
Sbjct: 3   RPFVTLKLATTLDGRIATHTGESRWITGEPARRAVHELRASHDAVLVGIETVLKDDPELT 62

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND-DPVL-ALAFRKKNIN 266
            RL G + + P R++LD   ++ L SK+++TA + P  +VT +D +P L +L  R   + 
Sbjct: 63  VRLQGYEGYQPARVVLDTRGRIPLHSKLVQTARVIPTYVVTTHDLNPELVSLGVRPLKVA 122

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
             +    DL   L  L   G+  L VEGG  +A +F+    VD +  +R+  ++G  G
Sbjct: 123 SRHQRV-DLIAALEALNEAGIDRLFVEGGGQIATAFVKLGAVDRLEWFRAPTILGGDG 179


>gi|114798296|ref|YP_760756.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Hyphomonas neptunium ATCC 15444]
 gi|114738470|gb|ABI76595.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Hyphomonas neptunium ATCC 15444]
          Length = 217

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 110/215 (51%), Gaps = 10/215 (4%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           K   ITLKIA S D  I +A   S  IT   S+ + H +RA++DAI+VGIGT LADDP L
Sbjct: 2   KNLRITLKIASSLDGRIALADGTSQWITSSASRARGHQMRAENDAIMVGIGTALADDPLL 61

Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
           T R   L    P+RI+ D + +L   S++  +  L  V+ VT       + A     ++I
Sbjct: 62  TARTVPLPAKQPVRIVADSNARLPTASRLASSTDLGRVVAVTAGQG---SDALAAAGVDI 118

Query: 268 IYCDC---RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
             C      D  + +      G+ +LL+EGG+ +A SF+ + LVD I  +R+ I+IG  G
Sbjct: 119 WRCGNGVRMDAGEFVRRAEAEGLRTLLIEGGSTLAASFMRAGLVDEIAWFRAPILIGGDG 178

Query: 325 IPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           +P+     L +      +  V  +  G DV   Y+
Sbjct: 179 LPALGALGLSDLKSAARWRPVATERIGDDVLDTYV 213


>gi|302773850|ref|XP_002970342.1| hypothetical protein SELMODRAFT_171495 [Selaginella moellendorffii]
 gi|300161858|gb|EFJ28472.1| hypothetical protein SELMODRAFT_171495 [Selaginella moellendorffii]
          Length = 378

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 162/302 (53%), Gaps = 27/302 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D+ +M   +  +R  +G TS NP V CLIV + G ++GRG     G PHAEV AL EAG 
Sbjct: 28  DSDYMRQCVELARRGLGRTSPNPMVGCLIVDNAGEIVGRGFHPRAGEPHAEVFALREAGS 87

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +A G+TAYV+LEPC H GR+PPC++ ++   +RRVVV   DP+  V+G+G++ L + G+ 
Sbjct: 88  KAHGSTAYVSLEPCDHVGRTPPCSRALVAARVRRVVVGTVDPNPLVAGKGVERLRRAGVE 147

Query: 126 VDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC----GSVPITGFISK 180
           V   +E E  ++   A+  R V K+    L+ A++ D      GC     S P+      
Sbjct: 148 VTVGVEEELCRVTNEAFFHRMVTKKPFTCLRYAMTID------GCLLADPSTPVAASFYS 201

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII-LDPHFKLS-----LDS 234
            Q+     + DA++    ++ A DP L     G ++  P+R++ +     LS     L +
Sbjct: 202 QQLE----EYDAVVTTEASLDA-DPVLLSAEQGAKQ--PLRVVAVTSSSSLSKLAGLLSA 254

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           ++  T  LAP +++    + +  +  R+KN+ ++  +  DL  +L +   RG  S+L++ 
Sbjct: 255 RVFDTK-LAPTLLLGGKGESIETV-LRRKNVEVVPVNEVDLDSVLDLCNQRGACSVLLDS 312

Query: 295 GA 296
            A
Sbjct: 313 TA 314


>gi|114571043|ref|YP_757723.1| riboflavin biosynthesis protein RibD [Maricaulis maris MCS10]
 gi|114341505|gb|ABI66785.1| riboflavin biosynthesis protein RibD [Maricaulis maris MCS10]
          Length = 207

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/147 (44%), Positives = 92/147 (62%), Gaps = 1/147 (0%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DAR+M  A+  +R   G T+ NP+V C++V+DG +I  G T  GG PHAE  AL+ AG E
Sbjct: 6   DARYMDLAVALARAQQGRTAPNPAVGCVLVRDGRIIATGATQDGGRPHAERVALDAAGAE 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GATAYVTLEPC+H+G++PPCA  +I+ GI R V+   D   +VSGRGL  L+  G+ V
Sbjct: 66  AAGATAYVTLEPCAHHGQTPPCADGLIQAGIERAVIACGDRFEQVSGRGLAILAAAGMTV 125

Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHI 152
           +  + E++       + +R      HI
Sbjct: 126 ETGLRETDATSLYAGFFSRLASGLPHI 152


>gi|329114509|ref|ZP_08243268.1| Riboflavin biosynthesis protein RibD [Acetobacter pomorum DM001]
 gi|326695989|gb|EGE47671.1| Riboflavin biosynthesis protein RibD [Acetobacter pomorum DM001]
          Length = 350

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 136/307 (44%), Gaps = 39/307 (12%)

Query: 22  VGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLE 77
           VG T+ NP V C+++   G V+        G  HAE  A+E+A   G   R  TA VTLE
Sbjct: 31  VGRTAPNPPVGCVLLDAQGDVLVVAAHHQAGTAHAERLAVEQARALGLVERIDTAVVTLE 90

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM---MESEG 134
           PC+H GR+PPC + ++   ++   +   DP+  V G G   L  +GI V+R+   M + G
Sbjct: 91  PCNHTGRTPPCTEALLSTPVKTAWIGCADPNPHVQGGGAARLEHEGITVNRLWQCMNAAG 150

Query: 135 -----KIFLHAYLTRQVEKRSHITLKIAV-SQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
                +  L  +  R    R  IT+K A+ S+ +M+   G  +   T   S    H LR 
Sbjct: 151 TYARCRALLAPFAWRMTHGRPWITVKQALDSKGSMVPPQGQKT--FTTPASLRLAHALRR 208

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
            +D I+ G GTVLAD P LT R   +++H   R +L                    V+  
Sbjct: 209 VTDGIVTGTGTVLADRPTLTVR--HVEDHPERRRLL--------------------VVCG 246

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
            E   P   LA      ++ +C   D+ +L  IL       +LVE G  +  +     L 
Sbjct: 247 QEKHAPAEWLASVSAAFDVSFCP--DIAQLPYILAQSDALWVLVEAGPTLLEALKTHNLW 304

Query: 309 DSIILYR 315
           D  +  R
Sbjct: 305 DDWLTIR 311


>gi|169836055|ref|ZP_02869243.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [candidate
           division TM7 single-cell isolate TM7a]
          Length = 277

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 145/282 (51%), Gaps = 23/282 (8%)

Query: 93  IECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DRMMESEGKIFLHAYLTRQVEKRSH 151
           ++ G++R V+   DP+ +V+G+G+Q L   GI V + +++SE       +    + K  +
Sbjct: 1   MKMGLKRCVIGSSDPNPKVAGKGVQILRNAGIEVRENVLKSECDKINQVFFKYIMTKIPY 60

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
           + LK A++ D  I      S  IT   ++ +V L R +   I+VGI TVLAD+P LT R+
Sbjct: 61  LFLKCAITLDGKIATKTGNSKWITNETAREKVQLYRNKFMGIMVGINTVLADNPSLTARV 120

Query: 212 -NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT----ENDDPVLALAFRKKNIN 266
            NG+   +P RII+DPHFK   +  IIK       IIVT    EN +  L  +   K + 
Sbjct: 121 ENGV---NPYRIIIDPHFKTGKNHNIIKENSDEKTIIVTSKNNENSEKQLDFSENSK-VK 176

Query: 267 IIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE-- 322
            ++ +      K++L  +   G+ S+L+EGG ++        ++D+  ++ +  ++G+  
Sbjct: 177 FVFLNGTKFSFKEILCKIGQIGIDSILLEGGQSLISQAFEENVIDAGEIFIANKILGDEK 236

Query: 323 ------GGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
                 G     ++E  + KN   V+ + +G +V +E+  KN
Sbjct: 237 GKSFIVGFDREKMDEAVILKN---VKYNVYGENVGMEFWQKN 275


>gi|168008266|ref|XP_001756828.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692066|gb|EDQ78425.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 550

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 170/367 (46%), Gaps = 19/367 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+  M  A+  +    GLT+ +P   C+I +   ++G G     G   AEVQA+EEA E+
Sbjct: 1   DSAHMLKAVELAESSNGLTAPHPKFGCVIARGRRIVGGGGLYGQGARSAEVQAVEEAREQ 60

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATA+++LEP    G     A  +++ G+ RVVV +  P     G+ +  L + G+ V
Sbjct: 61  ARGATAFLSLEPGDCGGDDAAIAA-LVQGGLGRVVVGMRHPLAHFRGKAIAALRRAGVRV 119

Query: 127 D---------RMMESEGKIFLHA---YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           +           +E+  K    A    L R        TLK A++ D  I  +   S  +
Sbjct: 120 EVGGEDFGGGGAIEAALKACQSANAPLLYRVSHNLPMSTLKYAMTLDGKIAASSGHSAWV 179

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           +  +S+++V   RAQSDA++VG  TV  D+P LT RL G   H P RI++     L  D+
Sbjct: 180 SSAVSRHRVMKTRAQSDAVIVGGNTVRIDNPNLTTRLEG--GHQPDRIVMSRALDLPRDA 237

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
            +   +    +++  +  +         + + ++  D    + ++     RG  S+L E 
Sbjct: 238 NLWDVSKANTIVMTQKGSNLEFQKLLTSRGVEVVEFDFLSPRAVMEHCYMRGYLSVLWEC 297

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           G  ++   I   +V  ++ + +  ++G     +P+ E  + +    ++     SDV  E 
Sbjct: 298 GGMLSAPAIQDGVVHKVLAFIAPKIVGGLRAATPVGELGMVQMTQALKL----SDVAFEQ 353

Query: 355 IGKNLCL 361
            G ++ +
Sbjct: 354 TGPDMLV 360


>gi|156977316|ref|YP_001448222.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
           harveyi ATCC BAA-1116]
 gi|156528910|gb|ABU73995.1| hypothetical protein VIBHAR_06102 [Vibrio harveyi ATCC BAA-1116]
          Length = 201

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/137 (42%), Positives = 81/137 (59%), Gaps = 1/137 (0%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +FM  AL  S   +     NP V C++VKDG ++  G T   G  HAEV+AL+    +  
Sbjct: 64  QFMLRALEVSLNALPACQPNPPVGCVLVKDGEIVSEGHTQAIGGNHAEVEALKAYKGDLS 123

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127
             TAYVTLEPCS  GR+P CA+ ++ CGI++VVV + DPD R +GRG+  L + G+ V+ 
Sbjct: 124 DVTAYVTLEPCSFVGRTPACAKTLVTCGIKKVVVAMLDPDPRNAGRGIDILKEGGVEVEI 183

Query: 128 RMMESEGKIFLHAYLTR 144
            +   E   FL  YL +
Sbjct: 184 GLCGEEASAFLSPYLGK 200


>gi|294670266|ref|ZP_06735159.1| riboflavin biosynthesis protein RibD [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308003|gb|EFE49246.1| riboflavin biosynthesis protein RibD [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 260

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 10/218 (4%)

Query: 111 VSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC 169
           ++G+GL  LS  GI  +  ++E+E +     +L+R    R  + LK A S D    ++  
Sbjct: 1   MAGKGLSMLSAAGIRTESGLLETEARELNRGFLSRIERGRPFVRLKCAASLDGKTALSDG 60

Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHF 228
            S  ITG  +++ V +LRA+S A+L GIGTVLADDP+L  R    L++  P+RI+LD   
Sbjct: 61  LSQWITGEAARHDVQILRAESCAVLTGIGTVLADDPQLNVRAFPTLRQ--PLRIVLDSRL 118

Query: 229 KLSLDSKIIKTALLAPVIIVT----ENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILV 283
           +L   +K++     +PV+++T    E     L        + +   D R  L  +LT+L 
Sbjct: 119 RLPPTTKLLADP-ASPVLLLTAVPPEKYPAALTAVPHLDILTVPAADGRISLPAVLTLLA 177

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            RG+  LLVE GA +  +F+ + L D I+LY++  ++G
Sbjct: 178 ERGIGELLVEAGATLCGAFLQAGLADEIVLYQAGKILG 215


>gi|302769374|ref|XP_002968106.1| hypothetical protein SELMODRAFT_169709 [Selaginella moellendorffii]
 gi|300163750|gb|EFJ30360.1| hypothetical protein SELMODRAFT_169709 [Selaginella moellendorffii]
          Length = 375

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 161/302 (53%), Gaps = 27/302 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D+ +M   +  +R  +G TS NP V CLIV + G ++GRG     G PHAEV AL EAG 
Sbjct: 25  DSDYMRQCVELARRGLGRTSPNPMVGCLIVDNAGEIVGRGFHPRAGEPHAEVFALREAGS 84

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +A G+TAYV+LEPC H GR+PPC++ ++   +RRVVV   DP+  V+G+G++ L + G+ 
Sbjct: 85  KAHGSTAYVSLEPCDHVGRTPPCSRALVAARVRRVVVGTVDPNPLVAGKGVERLRRAGVE 144

Query: 126 VDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC----GSVPITGFISK 180
           V   +E E  ++   A+  R V K+    L+ A++ D      GC     S P+      
Sbjct: 145 VTVGVEEELCRVTNEAFFHRIVTKKPFACLRYAMTID------GCLLADPSTPVAASFYS 198

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII-LDPHFKLS-----LDS 234
            Q+     + DA++    ++ A DP L     G ++  P+R++ +     LS     L +
Sbjct: 199 QQLE----EYDAVVTTEASLDA-DPVLLSAEQGAKQ--PLRVVAVTSSSSLSQLAGLLSA 251

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           ++  T  LAP +++    +  +    R+KN+ ++  +  DL  +L +   RG  S+L++ 
Sbjct: 252 RVFDTK-LAPTLLLGGKGES-METVLRRKNVEVVPVNEVDLDSVLDLCYQRGACSVLLDS 309

Query: 295 GA 296
            A
Sbjct: 310 TA 311


>gi|255080300|ref|XP_002503730.1| predicted protein [Micromonas sp. RCC299]
 gi|226518997|gb|ACO64988.1| predicted protein [Micromonas sp. RCC299]
          Length = 215

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/122 (50%), Positives = 77/122 (63%), Gaps = 2/122 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           DA  M  AL  +    G T  NP V C+IV  + G+V+G G     G PHAEV AL  AG
Sbjct: 72  DAERMRRALALAATAAGKTFPNPVVGCVIVDERSGVVVGEGYHPKAGEPHAEVFALRAAG 131

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
             A+G TAYVTLEPC H+GR+PPC++ +++ G+ RVVV   DPD RVSG G++ L   GI
Sbjct: 132 ANAKGCTAYVTLEPCDHFGRTPPCSRALVDAGVTRVVVGFVDPDPRVSGGGIRTLLDAGI 191

Query: 125 IV 126
            V
Sbjct: 192 EV 193


>gi|254673573|emb|CBA09063.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Neisseria meningitidis alpha275]
          Length = 267

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 116/225 (51%), Gaps = 9/225 (4%)

Query: 106 DPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164
           DP+  V+G+GL  L   GI  +  ++E + +     +L+R   +R  + LK AVS D   
Sbjct: 3   DPNPLVAGKGLALLEVAGIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKT 62

Query: 165 GMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRII 223
            ++   S  ITG  ++  V +LRA+S A+L GIGTVLAD+P L  R    L++  P RI+
Sbjct: 63  ALSDGSSFWITGEDARADVQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIV 120

Query: 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKL 278
           LD   +L  +S ++        I   E ++  L       ++ I+      D + DL  L
Sbjct: 121 LDSRLRLPPNSHLVTDGQSPTYIATLERNEDRLHPYREHAHVRILMPSETADSKIDLHHL 180

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           + +L   G   ++VE G+ +  +F+   L D I+LYRS  ++G G
Sbjct: 181 MRLLADEGFGEIMVEAGSELTSAFLAENLADEIVLYRSPKILGSG 225


>gi|220904884|ref|YP_002480196.1| riboflavin biosynthesis protein RibD [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869183|gb|ACL49518.1| riboflavin biosynthesis protein RibD [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 385

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 153/333 (45%), Gaps = 22/333 (6%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
           FM  A+  ++     T  NP V  ++V+DG ++ RG     G  HAEV  L +A   G +
Sbjct: 9   FMREAIALAQQGRWKTCPNPMVGAVLVRDGHIVARGWHRAFGLDHAEVDCLNDAAAQGVD 68

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
               T  VTLEPC H G++PPC   ++  GI+++VV + DP+    G G   L + G+ +
Sbjct: 69  PSECTLVVTLEPCCHQGKTPPCTDAVLRAGIKKIVVGLSDPNPEACG-GACRLRESGLDV 127

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           ++ +     +  +  +L  Q  +R ++ LK+A + D  I      S  I+   S+ +V  
Sbjct: 128 IEGVCADACRDLVADFLVWQQAQRPYVILKMAATLDGRIATRKGESQWISSEESRQEVQR 187

Query: 186 LRAQ----SDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIIL---------DPHFKLS 231
           LRA       A+LVG GT  ADDP LT R +N  +   P  +           D  F L 
Sbjct: 188 LRAGIGRCGGAVLVGGGTFRADDPRLTVRPINDGEPLGPQPLACVLTSRLPQPDADFYL- 246

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLA-LAFRKKNINIIYCDCRDLKKLL-TILVGRGVTS 289
           L  +  +T  LA            L  +  R  ++        DL  +L T+        
Sbjct: 247 LKERPQQTVFLASPAAAASTTAKALRDMGVRVLSLGPSLRGGPDLTHMLRTMREELDCPY 306

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
           LL EGG  +A S + + +VD   L+ + +++G+
Sbjct: 307 LLCEGGGHLALSLLEAGVVDEFRLHMAPMILGD 339


>gi|325963044|ref|YP_004240950.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469131|gb|ADX72816.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 386

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/261 (32%), Positives = 127/261 (48%), Gaps = 25/261 (9%)

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G +  G T  VTLEPC+H GR+ PCA  II  GI  VV  VDDP    +G G   L + G
Sbjct: 87  GLDLTGCTMVVTLEPCNHVGRTGPCAAAIIAAGITDVVYAVDDPHDPAAG-GATTLREAG 145

Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + V   + +   + L+  +      KR  +TL IA + D+ I      S  I+   S   
Sbjct: 146 VRVRSGLGATESLDLNRQWFEAVAAKRPFVTLHIAQTLDSRIAAEDGTSQWISSPESLAD 205

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H +R + DAILVG  TVL D+P LT R              +P  +L+  SK       
Sbjct: 206 NHAIRGRIDAILVGTQTVLVDNPRLTAR--------------EPSGELA--SK------- 242

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            PV  V    D     A   ++  +++   RD ++ L+IL   G+  L+VEGG+ +  +F
Sbjct: 243 QPVRAVMGMRDIPADAAVHGRDGRVVHLPTRDPREALSILYAHGIRHLMVEGGSRILSAF 302

Query: 303 INSRLVDSIILYRSQIVIGEG 323
           + + LVD +I+Y +  ++G G
Sbjct: 303 LAAELVDELIVYLAPTLLGSG 323


>gi|168045667|ref|XP_001775298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673379|gb|EDQ59903.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 602

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 168/365 (46%), Gaps = 19/365 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+R +  A+  ++   GLT+ +P   C++V+   V+G G  +  G   AEVQA+EEAGE 
Sbjct: 19  DSRHLLKAVELAKRSDGLTAPHPKFGCVVVRGRRVVGTGGLSGLGARPAEVQAVEEAGEY 78

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATA++ LEP    G     A  ++  G+ R+VV +  P     G+ +  L   G+ V
Sbjct: 79  ARGATAFLNLEPGDCGGDDAAVAA-LVRGGLERIVVGMRHPLPHFRGKAIAALQSAGVKV 137

Query: 127 DRMMESEG------------KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           D   E  G            ++     L R        TLK A++ D  I  +   S  +
Sbjct: 138 DVAGEDCGIGGAIEAALKACQLANAPLLYRASHNLPMSTLKYAMTLDGKIAASSGHSAWV 197

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           +   S+ +V   RAQ DA++VG  TV +D+P LT R  G   H P RI++     L  ++
Sbjct: 198 SSADSRRRVFETRAQCDAVIVGGNTVRSDNPNLTTRQAG--GHQPDRIVITRTMNLPREA 255

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
            +  T+    +++  +  +         + + ++  D    + ++     RG  S+L E 
Sbjct: 256 NLWDTSNAHTIVMTEKGANVEFQKHLASRGVEVVQFDLISPRAVMEHCYSRGYLSVLWEC 315

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           G  ++   I   ++  ++ + +  V+G    P+P+     E  F+ + +    SDV  E 
Sbjct: 316 GGMLSAPAIQGGVIHKVLAFIAPKVVGGLQAPTPVG----ELGFVQMTQALKLSDVSFEL 371

Query: 355 IGKNL 359
            G ++
Sbjct: 372 TGPDM 376


>gi|260551098|ref|ZP_05825302.1| riboflavin biosynthesis protein RibD [Acinetobacter sp. RUH2624]
 gi|260405865|gb|EEW99353.1| riboflavin biosynthesis protein RibD [Acinetobacter sp. RUH2624]
          Length = 113

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/93 (50%), Positives = 66/93 (70%)

Query: 7  DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
          D  +M  A+  ++  +  T  NP+V C+IVKD  VIG G     G PHAEV AL +AGE+
Sbjct: 7  DQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDNQVIGEGFHPKAGQPHAEVFALRQAGEQ 66

Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
          A+GATAYVTLEPC+HYGR+PPCA+ +++  +++
Sbjct: 67 AQGATAYVTLEPCAHYGRTPPCAEALVKAQVKK 99


>gi|197106417|ref|YP_002131794.1| riboflavin biosynthesis protein RibD [Phenylobacterium zucineum
           HLK1]
 gi|196479837|gb|ACG79365.1| riboflavin biosynthesis protein RibD [Phenylobacterium zucineum
           HLK1]
          Length = 143

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/135 (42%), Positives = 80/135 (59%), Gaps = 2/135 (1%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A+  +R  VG T  NP+V C+I+KDG V+G   T  GG PHAE  AL +AGE ARGA
Sbjct: 1   MRRAIALARPQVGRTGENPAVGCVILKDGRVLGEAATGDGGRPHAEELALAQAGEAARGA 60

Query: 71  TAYVTLEPCSHYGR-SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128
           TA+VTLEPC+     +  C++ +   G+ RVVV   DP V  +G G   L   GI+ D+ 
Sbjct: 61  TAFVTLEPCAERSSGAASCSERLAAAGMSRVVVACADPSVFAAGGGAARLRAAGIVFDQG 120

Query: 129 MMESEGKIFLHAYLT 143
           ++E+E      +Y+ 
Sbjct: 121 LLEAEAAPLYASYVA 135


>gi|222622845|gb|EEE56977.1| hypothetical protein OsJ_06705 [Oryza sativa Japonica Group]
          Length = 558

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 150/347 (43%), Gaps = 49/347 (14%)

Query: 23  GLTSTNPSVACLIVK--------DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYV 74
           GLTS +P+  C+I +        +  V+G G     G P AE+ A +EAGE ARGATAY+
Sbjct: 50  GLTSPHPNFGCVIARPQLETDNAEAWVVGEGFLYAQGTPCAELLAAQEAGEHARGATAYL 109

Query: 75  TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
            LEP   YG S   +  + E    +  + V+ P                           
Sbjct: 110 NLEPGDCYGDSTAVSTLVQEA--LKSCLIVNAP--------------------------- 140

Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
                  L R   +     LK A++ D  I  +   +  ++G  S+ +V  LR +SDAI+
Sbjct: 141 ------LLYRAAFRVPFSVLKYAMTADGKIAASSGHASWVSGKSSRGRVFELRGRSDAII 194

Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
           VG  TV  DDP LT R   ++ H P+RI++     L  ++ +        ++        
Sbjct: 195 VGGNTVRLDDPRLTAR--HVKGHVPVRIVMSQSLNLPEEANLWNVHDAYTIVATQRGARR 252

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
            L      K + ++  D  + + +++    RG  S+L E G  +A S I++ ++  +  +
Sbjct: 253 DLQKKLALKGVEVVEFDMLNPRDVMSYCYDRGYLSVLWECGGTLAASAISASVIHKVYAF 312

Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
            +  +IG    P+P+  G L  N M    D    DV  E I +++ +
Sbjct: 313 LAPKIIGGVNAPTPV--GELGMNQMTQAIDLI--DVSYEQIDRDMLM 355


>gi|224130250|ref|XP_002320789.1| predicted protein [Populus trichocarpa]
 gi|222861562|gb|EEE99104.1| predicted protein [Populus trichocarpa]
          Length = 199

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 92/154 (59%), Gaps = 13/154 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M   +  +R  +G TS +P V C+IVK             G PHAEV AL +AG+ 
Sbjct: 31  DGFYMRRCVELARKAIGCTSPSPMVGCVIVK------------AGQPHAEVFALRDAGDV 78

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A  ATAYV+LEPC+HYGR+PPC++ +++  ++ VV+ + DP+  V+ RG+Q L   GI V
Sbjct: 79  AENATAYVSLEPCNHYGRTPPCSEVMVKAKLKEVVIGMIDPNPIVATRGVQRLRDAGIDV 138

Query: 127 DRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVS 159
              +E E  K  + A++ + +  +  +TL+ ++S
Sbjct: 139 VVGVEEELCKRLIEAFIHKMLTGKPFVTLRYSLS 172


>gi|91792826|ref|YP_562477.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella
           denitrificans OS217]
 gi|91714828|gb|ABE54754.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella
           denitrificans OS217]
          Length = 142

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 57/137 (41%), Positives = 80/137 (58%), Gaps = 1/137 (0%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
            +M  AL  S+  +     NP V C++VKDG V+G+G T   G  HAEV+AL     +  
Sbjct: 4   EYMLIALELSKKALPHCLPNPPVGCVLVKDGQVVGQGFTQVIGGNHAEVEALNSYTGDLA 63

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127
           G TAYVTLEPCS  GR+P CA  +   G++ +V+ + DPD R +G+GL  L   GI V+ 
Sbjct: 64  GVTAYVTLEPCSFVGRTPACAARLAHSGLKHLVLAMLDPDSRNNGKGLAMLQHAGINVEL 123

Query: 128 RMMESEGKIFLHAYLTR 144
            + E++   FL  YL +
Sbjct: 124 GICEAQASAFLSPYLLK 140


>gi|218190720|gb|EEC73147.1| hypothetical protein OsI_07177 [Oryza sativa Indica Group]
          Length = 577

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 150/347 (43%), Gaps = 49/347 (14%)

Query: 23  GLTSTNPSVACLIVK--------DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYV 74
           GLTS +P+  C+I +        +  V+G G     G P AE+ A +EAGE ARGATAY+
Sbjct: 69  GLTSPHPNFGCVIARPQLETDNAEAWVVGEGFLYAQGTPCAELLAAQEAGEHARGATAYL 128

Query: 75  TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
            LEP   YG S   +  + E    +  + V+ P                           
Sbjct: 129 NLEPGDCYGDSTAVSTLVQEA--LKSCLIVNAP--------------------------- 159

Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
                  L R   +     LK A++ D  I  +   +  ++G  S+ +V  LR +SDAI+
Sbjct: 160 ------LLYRAAFRVPFSVLKYAMTADGKIAASSGHASWVSGKSSRGRVFELRGRSDAII 213

Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
           VG  TV  DDP LT R   ++ H P+RI++     L  ++ +        ++        
Sbjct: 214 VGGNTVRLDDPRLTAR--HVKGHVPVRIVMSQSLNLPEEANLWNVHDAYTIVATQRGARR 271

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
            L      K + ++  D  + + +++    RG  S+L E G  +A S I++ ++  +  +
Sbjct: 272 DLQKKLALKGVEVVEFDMLNPRDVMSYCYDRGYLSVLWECGGTLAASAISASVIHKVYAF 331

Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
            +  +IG    P+P+  G L  N M    D    DV  E I +++ +
Sbjct: 332 LAPKIIGGVNAPTPV--GELGMNQMTQAIDLI--DVSYEQIDRDMLM 374


>gi|327312630|ref|YP_004328067.1| riboflavin biosynthesis protein RibD [Prevotella denticola F0289]
 gi|326946400|gb|AEA22285.1| riboflavin biosynthesis protein RibD [Prevotella denticola F0289]
          Length = 380

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 107/392 (27%), Positives = 145/392 (36%), Gaps = 109/392 (27%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
           M     D  +M   L+ +R    L   NP V  +IV KDG +IG G     G  HAEV A
Sbjct: 1   MKQEKTDEIYMRRCLQLARNGQQLAKPNPMVGAVIVSKDGRIIGEGYHVRCGEGHAEVNA 60

Query: 60  LEEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
                +E       AT YV+LEPCSHYG++PPCA  II  G+RRVV    DP  +V GRG
Sbjct: 61  FASVRKEDEALLHEATVYVSLEPCSHYGKTPPCADLIISKGVRRVVCGCIDPFSKVQGRG 120

Query: 116 LQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAV---------------- 158
           ++ L + GI V   ++E E       ++T     R ++ LK A                 
Sbjct: 121 VKRLREAGIDVTVGVLEKECLELNKRFITYNTHHRPYVILKWAQTKRVTTNTLSNTPTNT 180

Query: 159 ---------------------------------SQDNMIGMAGCGSVPITGFISKNQVHL 185
                                            SQD +       SV   G +     H 
Sbjct: 181 LSNTPASPSPSPLPHREGSEHRDSTDDLSIINGSQDEITAREKKTSVAYIGNLPGKDYHP 240

Query: 186 L--------------RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231
           L              RA++DAILVG  T   + P+LT R       +P +++L  H    
Sbjct: 241 LIISTPFTKMLVHKLRAENDAILVGKTTEELEHPQLTVR--EWSGPNPEKLVLTSHPTRE 298

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
                             E   P  ALA                      L      SL+
Sbjct: 299 -----------------GEYATPAEALAH---------------------LYEEKKQSLV 320

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           VEGG     SF+++ L D I +  +   +G+G
Sbjct: 321 VEGGVKTLQSFLDAGLWDEIRIETAPFTVGKG 352


>gi|262277170|ref|ZP_06054963.1| hypothetical protein HIMB114_0582 [alpha proteobacterium HIMB114]
 gi|262224273|gb|EEY74732.1| hypothetical protein HIMB114_0582 [alpha proteobacterium HIMB114]
          Length = 357

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 138/305 (45%), Gaps = 12/305 (3%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGR 84
           T  NP V    +     I   VT   G PHAE  AL +  ++      Y +LEPC H G+
Sbjct: 28  TFPNPCVGAAGIDKNNHIHLAVTGKNGSPHAEF-ALLKNKKKNFINELYTSLEPCCHIGK 86

Query: 85  SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
           +P C+  II+  ++++     D D RV G+  + L +K I +    +      LH Y   
Sbjct: 87  NPSCSNLIIKKKVKKIFSSSIDLDERVKGKTNRLLKKKNISLKYTKQPSKPSILHNYCNS 146

Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
              ++ ++  KIA S D             T  +     HLLR QSD+IL+G  T+  D+
Sbjct: 147 N--QKPYVVAKIASSSDFYSKHKFKRLFTSTSALK--FAHLLRYQSDSILIGKNTINHDN 202

Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-IKTALLAPVIIVTENDDPVLALAFRKK 263
           P L CRLNG+++   + II   +  L  + K+ +   L    +  +E +   +      K
Sbjct: 203 PSLNCRLNGIEKKIAIFII---NKNLFFNKKVFLNNNLKGSYVFHSEKNKTKIKKV--GK 257

Query: 264 NINIIYCDCRD-LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
              +IY D    +  LL I+   G   LL+EGGA     F+  + ++ +   ++++   +
Sbjct: 258 FFKLIYFDLNQPINDLLKIVYQLGYKKLLIEGGANTLRYFLKGKCINELYHVKNKLNFNK 317

Query: 323 GGIPS 327
            G+ S
Sbjct: 318 NGLLS 322


>gi|119384080|ref|YP_915136.1| riboflavin biosynthesis protein RibD [Paracoccus denitrificans
           PD1222]
 gi|119373847|gb|ABL69440.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Paracoccus
           denitrificans PD1222]
          Length = 219

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 70/116 (60%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  +R   G    NP V C+IVKDG +I  G T  GG PHAE  AL  AG  ARGA
Sbjct: 1   MGRALALARRMRGHVWPNPPVGCVIVKDGTIIAEGETQPGGRPHAERLALNRAGAAARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           T YVTLEPC H+GR+PPCA  II  G+ RVV  + DPD RV G G   L   GI V
Sbjct: 61  TLYVTLEPCCHWGRTPPCADAIIAAGVTRVVAAMQDPDPRVDGGGFARLRAAGIEV 116


>gi|149909528|ref|ZP_01898182.1| putative riboflavin deaminase [Moritella sp. PE36]
 gi|149807433|gb|EDM67384.1| putative riboflavin deaminase [Moritella sp. PE36]
          Length = 144

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/137 (42%), Positives = 75/137 (54%), Gaps = 1/137 (0%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D +FM  AL  S+  +     NP V C++VKD I++  G T   G  HAE QA+   G  
Sbjct: 6   DEKFMLRALELSKLALPNCRPNPPVGCVLVKDNIIVSEGYTQAPGQHHAEAQAIANYGAA 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
               TAYVTLEPCS  GR+P CA  +    I+RVVV   DPD R SG+GL  L   GI V
Sbjct: 66  LNDITAYVTLEPCSFVGRTPSCAHTLAGLNIKRVVVATVDPDPRNSGKGLSVLRNAGIDV 125

Query: 127 D-RMMESEGKIFLHAYL 142
           +  + + +   F+  YL
Sbjct: 126 EVGVCQRDVSAFITPYL 142


>gi|56459161|ref|YP_154442.1| riboflavin-specific deaminase [Idiomarina loihiensis L2TR]
 gi|56178171|gb|AAV80893.1| Riboflavin-specific deaminase [Idiomarina loihiensis L2TR]
          Length = 141

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 81/138 (58%), Gaps = 1/138 (0%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +FM  AL  S+  +     NP V C++VKDG VI +G T   G  HAEV+AL     +  
Sbjct: 4   KFMLEALNISKQALPHCEPNPPVGCVLVKDGEVISKGFTQAIGGSHAEVEALNAHSGDLS 63

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           G TAYVTLEPCS  GR+  CA  ++  GI+ V++ + DPD+R +G+G + L+  G+ V+ 
Sbjct: 64  GVTAYVTLEPCSFVGRTAACASTLLASGIKHVIIAMLDPDIRNNGKGAEILTAGGVKVEV 123

Query: 129 MMESE-GKIFLHAYLTRQ 145
            + +E    FL  YL + 
Sbjct: 124 GLCAELVAQFLSPYLAKS 141


>gi|258542930|ref|YP_003188363.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634008|dbj|BAH99983.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637068|dbj|BAI03037.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640120|dbj|BAI06082.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643177|dbj|BAI09132.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646232|dbj|BAI12180.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649284|dbj|BAI15225.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652271|dbj|BAI18205.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655328|dbj|BAI21255.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO
           3283-12]
          Length = 350

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 135/307 (43%), Gaps = 39/307 (12%)

Query: 22  VGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLE 77
           VG T+ NP V C+++   G V+        G  HAE  A+E+A   G   R  TA VTLE
Sbjct: 31  VGRTAPNPPVGCVLLDAQGDVLVVAAHHQAGTAHAERLAVEQARALGVVERIDTAVVTLE 90

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME------ 131
           PC+H GR+PPC + ++   ++ V +   DP+  V G G   L ++GI V+R+ +      
Sbjct: 91  PCNHTGRTPPCTEALLSTPVKTVWIGCADPNPHVQGGGAARLEREGITVNRLWQCMNAAA 150

Query: 132 --SEGKIFLHAYLTRQVEKRSHITLKIAV-SQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
             +  +  L  +  R    R  +T+K A+ S+ +M+   G  +   T   S    H LR 
Sbjct: 151 TYARCRALLAPFAMRMTHGRPWVTVKQALDSKGSMVPPKGQKT--FTTPASLRLAHTLRR 208

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
            +D I+   GTVLAD P LT R   +++H   R +L                    V+  
Sbjct: 209 VTDGIVTATGTVLADRPTLTVR--HVEDHPERRRLL--------------------VVCG 246

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
            E   P   L       ++ +C   D+ +L  IL       +LVE G  +  +     L 
Sbjct: 247 QEKHAPAEWLDSVSAAFDVRFCP--DIAQLPDILAQSDALWVLVEAGPTLLEALKTHNLW 304

Query: 309 DSIILYR 315
           D  +  R
Sbjct: 305 DDWLTIR 311


>gi|116328771|ref|YP_798491.1| pyrimidine deaminase, riboflavin biosynthesis [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116121515|gb|ABJ79558.1| Pyrimidine deaminase, riboflavin biosynthesis [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
          Length = 432

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 106/210 (50%), Gaps = 8/210 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLI--VKDGIVIGRGVTAYGGCPHAEVQALEE---AG 64
           F     + S    G +S NP V+CLI  V +  ++ +G T+  G PHAE  A  E    G
Sbjct: 8   FREELRKLSFLSTGESSPNPPVSCLITDVDNARILAKGWTSPTGGPHAERNAYYEFVKNG 67

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV-SGRGLQWLSQKG 123
                   +VTLEPC+H G++PPC   I+E   + +     DP+  V    GL+   ++G
Sbjct: 68  FFKEPHNVWVTLEPCTHSGKTPPCLDLILEHKPKTLYYGRKDPNPLVRENEGLELCRRRG 127

Query: 124 IIV--DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           I+V  +  +    +  L  +++R   K+  + LK A+S++          V  +G IS +
Sbjct: 128 ILVVAEPGLREIAEESLFGFVSRIERKKPSMILKTALSKEGFFSKRDKFPVRFSGNISNH 187

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL 211
              +LRA+ DA+LVG GT+  D+P L  R+
Sbjct: 188 LTSILRAKCDAVLVGPGTLFHDNPGLEFRI 217


>gi|116331682|ref|YP_801400.1| pyrimidine deaminase, riboflavin biosynthesis [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116125371|gb|ABJ76642.1| Pyrimidine deaminase, riboflavin biosynthesis [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 432

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 106/210 (50%), Gaps = 8/210 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLI--VKDGIVIGRGVTAYGGCPHAEVQALEE---AG 64
           F     + S    G +S NP V+CLI  V +  ++ +G T+  G PHAE  A  E    G
Sbjct: 8   FREELRKLSFLSTGESSPNPPVSCLITDVDNARILAKGRTSPTGGPHAERNAYYEFVKNG 67

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV-SGRGLQWLSQKG 123
                   +VTLEPC+H G++PPC   I+E   + +     DP+  V    GL+   ++G
Sbjct: 68  FFKEPHNVWVTLEPCTHSGKTPPCLDLILEHKPKTLYYGRKDPNPLVRENEGLELCRRRG 127

Query: 124 IIV--DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           I+V  +  +    +  L  +++R   K+  + LK A+S++          V  +G IS +
Sbjct: 128 ILVVAEPGLREIAEESLFGFVSRIERKKPSMILKTALSKEGFFSKRDKFPVRFSGNISNH 187

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL 211
              +LRA+ DA+LVG GT+  D+P L  R+
Sbjct: 188 LTSILRAKCDAVLVGPGTLFHDNPGLEFRI 217


>gi|86152320|ref|ZP_01070531.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315125029|ref|YP_004067033.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85840809|gb|EAQ58060.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315018751|gb|ADT66844.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 326

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 159/368 (43%), Gaps = 79/368 (21%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +M+ AL  +  +  LT  NP+V C+I+ K+G ++        G  HAE+ A+  A +  R
Sbjct: 5   YMNLALNEAWKYQFLTYPNPAVGCVILDKNGKILAIKAHEKAGLAHAELNAITHAFKSLR 64

Query: 69  -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                     + A+VTLEPCSH G++PPCA+   E G +++ + 
Sbjct: 65  PEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIFIS 124

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           V D +   SG G ++L ++GI V+  +++ EGK  L  +L  Q  KR     K+A+S + 
Sbjct: 125 VKDENKIASG-GAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQ--KRQFKLFKLALSMNG 181

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222
               +  G + ++  +S+   H +RA  D ++VG  T+  D P L  RL   +  +P   
Sbjct: 182 ----SPFGKI-VSNELSRTYAHKIRAVIDLLVVGGETIRKDHPILDARL--CKAKAPNLC 234

Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282
           IL      + D  I                 P+  +  R+     IY       K     
Sbjct: 235 ILSRQNIDNFDKNI-----------------PLFKVPNRQ-----IYTQIPSEAKF---- 268

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
                  L+ EGG     +F +   +D  ++++S  +  E  +  PL       NF  + 
Sbjct: 269 -------LMYEGGENFLKTFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKPLY 312

Query: 343 RDYFGSDV 350
           R++ GSD 
Sbjct: 313 RNFLGSDT 320


>gi|184200815|ref|YP_001855022.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Kocuria rhizophila DC2201]
 gi|183581045|dbj|BAG29516.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Kocuria rhizophila DC2201]
          Length = 434

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/188 (37%), Positives = 95/188 (50%), Gaps = 6/188 (3%)

Query: 28  NPSV-ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR----GATAYVTLEPCSHY 82
           NP V A L+   G ++  G     G PHAEV  L++A   AR    G+T  VTLEPC H 
Sbjct: 32  NPVVGAALLGPTGQLLHVGHHRGAGTPHAEVDVLQQA-RAARTPLEGSTLVVTLEPCHHT 90

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
           GR+ PC   +   G+ RVV  + DP     G G    S    +   ++  E +     +L
Sbjct: 91  GRTGPCTAAVEAAGVPRVVYALADPTAEARGGGAALRSHGVHVRAGLLADEARELNERWL 150

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
             + + R  ++LKIA S D  +  A   S  ITG  ++ + H LR + DAILVG GT+  
Sbjct: 151 RAREQARPFVSLKIAQSLDGRVAAADGTSQWITGLPARAEGHALRTRVDAILVGGGTLRG 210

Query: 203 DDPELTCR 210
           DDP LT R
Sbjct: 211 DDPALTAR 218



 Score = 42.7 bits (99), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 35/58 (60%)

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
             ++    D ++ LT L   G   +LVEGG  VA +F+ + LVD + L+++ +++G+G
Sbjct: 331 RFVHLSTHDPREALTRLRDLGAAHVLVEGGPTVAAAFLAADLVDELWLHQAPLLLGDG 388


>gi|254166543|ref|ZP_04873397.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
           [Aciduliprofundum boonei T469]
 gi|289596093|ref|YP_003482789.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Aciduliprofundum boonei T469]
 gi|197624153|gb|EDY36714.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
           [Aciduliprofundum boonei T469]
 gi|289533880|gb|ADD08227.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Aciduliprofundum boonei T469]
          Length = 217

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/215 (35%), Positives = 113/215 (52%), Gaps = 18/215 (8%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R  + +  A+S D  I + G   + I+      +VH +RA  DAILVGI T+L DDP+LT
Sbjct: 3   RPKVIINAAMSVDGKIALVGGKRIKISDEEDFKRVHKMRASVDAILVGINTILKDDPKLT 62

Query: 209 CRLNGL-QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
            +   +    +P+R++LD   ++  +++++  ++   +I  TEN         R+ N  I
Sbjct: 63  VKEKYVANAKNPVRVVLDSKLRIPKNARVL-NSIAKTIIATTEN------AKIRELNAEI 115

Query: 268 IYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           + C  D  DLK LL  L  RG+ S++VEGG  V  SF+   LVD + ++   +VIG GG 
Sbjct: 116 VICGKDKVDLKCLLNELWKRGIKSVMVEGGGTVISSFLRENLVDELNVFVGSLVIG-GGA 174

Query: 326 PSPLEEGYLEKNFMCVRRDYF------GSDVCLEY 354
           PS L EG   KN   V R  F      GS + L Y
Sbjct: 175 PS-LVEGIGAKNENEVIRLKFLECKPLGSGILLRY 208


>gi|148975779|ref|ZP_01812610.1| Probable riboflavin biosynthesis protein RibD [Vibrionales
           bacterium SWAT-3]
 gi|145964852|gb|EDK30104.1| Probable riboflavin biosynthesis protein RibD [Vibrionales
           bacterium SWAT-3]
          Length = 141

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/140 (39%), Positives = 81/140 (57%), Gaps = 1/140 (0%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            + ++M  AL+ S   +     NP V C++VK+  V+  G T   G  HAEV+AL     
Sbjct: 1   MNQQYMLQALQASHQALPDCQPNPPVGCILVKNDKVVSVGYTQKVGGNHAEVEALNHYDG 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +  G TAYVTLEPCS  GR+P CA  +++ G++ VVV + DPD R +GRG+  L   G+ 
Sbjct: 61  DMEGVTAYVTLEPCSFVGRTPACANTLVKAGVKHVVVAMLDPDPRNNGRGVAILESHGVK 120

Query: 126 VD-RMMESEGKIFLHAYLTR 144
           VD  + +++   FL  YL +
Sbjct: 121 VDVGLCQAQVSAFLTPYLGK 140


>gi|209544013|ref|YP_002276242.1| riboflavin biosynthesis protein RibD [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531690|gb|ACI51627.1| riboflavin biosynthesis protein RibD [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 366

 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 136/313 (43%), Gaps = 47/313 (15%)

Query: 21  HVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEA---RGATAYVTL 76
           ++G T+ NP V C I+   G ++        G PHAE  AL +  E+    R + A VTL
Sbjct: 29  YMGATAPNPPVGCAILDARGEILTVAAHHRAGAPHAEALALRQCAEQGLMDRASVAVVTL 88

Query: 77  EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI 136
           EPC+H GR+ PC++ I+   IR V V   DP+ RV+G G   L   G  V  + E+ G++
Sbjct: 89  EPCNHTGRTGPCSEAILASPIRTVWVGAADPNPRVAGGGAARLRAAGCAVYVLGEAGGEL 148

Query: 137 --------------FLHAYLTRQVEKRSHITLKIAVSQD-NMIGMAGCGSVPITGFISKN 181
                          +  ++      R+ +T+K AV  D +MI  A  G    T   +  
Sbjct: 149 LPDPFPELAAACRALIAPFVHWSRTGRAWLTVKQAVDADGSMIPPA--GRTTFTSDAALT 206

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR--IILDPHFKLSLDSKIIKT 239
             H LR  +DA++ G GTVLAD P L  R          R  ++ D   ++  D +    
Sbjct: 207 LAHRLRRATDAVVTGSGTVLADRPGLDVRRVADHADRAARPLVVCDRRGRVPEDWRA--- 263

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
                              A R +  ++  CD  D+ +L  +L   GV   LVE G A+ 
Sbjct: 264 -------------------AARGRGFDVRTCD--DITRLPAMLGADGVLWALVEAGPALL 302

Query: 300 HSFINSRLVDSII 312
            +   + L D  +
Sbjct: 303 DALRAAGLWDDWL 315


>gi|91225503|ref|ZP_01260625.1| putative riboflavin deaminase [Vibrio alginolyticus 12G01]
 gi|269968858|ref|ZP_06182841.1| putative riboflavin deaminase [Vibrio alginolyticus 40B]
 gi|91189866|gb|EAS76139.1| putative riboflavin deaminase [Vibrio alginolyticus 12G01]
 gi|269826538|gb|EEZ80889.1| putative riboflavin deaminase [Vibrio alginolyticus 40B]
          Length = 141

 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/137 (43%), Positives = 77/137 (56%), Gaps = 1/137 (0%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
            FM  AL  S+  +     NP V C++VKD  ++  G T   G  HAEV+AL        
Sbjct: 4   EFMRRALEVSKNALPECQPNPPVGCVLVKDNQIVSEGHTQAIGGNHAEVEALNAYQGSLE 63

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
             TAYVTLEPCS  GR+P CA  +++ GI +VVV + DPD R SGRG++ L Q GI V+ 
Sbjct: 64  SVTAYVTLEPCSFVGRTPACAVTLVKSGISKVVVAILDPDPRNSGRGIEILKQAGIEVET 123

Query: 129 -MMESEGKIFLHAYLTR 144
            +   E   FL  YL +
Sbjct: 124 GLCGEEVSEFLTPYLGK 140


>gi|24213844|ref|NP_711325.1| pyrimidine deaminase, riboflavin biosynthesis [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45658378|ref|YP_002464.1| hypothetical protein LIC12536 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24194684|gb|AAN48343.1| pyrimidine deaminase, riboflavin biosynthesis [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45601621|gb|AAS71101.1| RibD [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
          Length = 466

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 113/219 (51%), Gaps = 8/219 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLI--VKDGIVIGRGVTAYGGCPHAEVQAL 60
           ++S   +F     + S   +G +S NP V+CLI  V++  +  +G T+  G PHAE  A 
Sbjct: 1   MTSLPEKFREELRKLSFLSMGESSPNPPVSCLITDVENKRIFAKGRTSPTGGPHAERNAY 60

Query: 61  EE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV-SGRGL 116
            E    G  ++    +VT EPC+H+G++PPC   I+E   + +   + DP+  V    GL
Sbjct: 61  YEFINNGLLSKPHNVWVTFEPCTHHGKTPPCLDLILEHKPKTLYYGLKDPNPLVRKNEGL 120

Query: 117 QWLSQKGIIV--DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           +     GI V  D  ++   +  L  +++R  +++  + +K AVS++         +V +
Sbjct: 121 EICRNAGIQVVSDFGLKEIAEESLFGFISRIEKQKPSMIIKSAVSKEGFFTTKDKATVRL 180

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213
           +G +S     +LRA+ DA+L+G  T+  D P L  R+ G
Sbjct: 181 SGNLSDRLTSILRAKCDAVLIGPRTLFQDLPGLDFRIGG 219


>gi|222628465|gb|EEE60597.1| hypothetical protein OsJ_13992 [Oryza sativa Japonica Group]
          Length = 739

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 145/284 (51%), Gaps = 16/284 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  ++   +  +R   G TS NP V C++V+ G V+G G     G PHAEV AL +A + 
Sbjct: 4   DGVYIRWCVELARKAAGHTSPNPMVGCVVVRGGRVVGEGFHPEAGQPHAEVFALRDARDL 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A  ATAYV+LEPC+HYGR+PPC + +I   ++ VVV + DP+  V+ +G++ L   GI V
Sbjct: 64  AENATAYVSLEPCNHYGRTPPCTEALINAKLKDVVVGMTDPNPIVASKGIERLQSAGIDV 123

Query: 127 DRMMESEG--KIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISKNQV 183
              ME E   +    AY+   +  ++  TL+  +S +  ++   G G+    G+ S+   
Sbjct: 124 RVCMEEEALCRNLNEAYIHCMLTGKAFATLRTTLSVNGVVVNQIGTGADQPGGYYSQ--- 180

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
            LL+     I+ GI   +   P  T    G ++  P+ II+       L+ + ++    +
Sbjct: 181 -LLKEYDGVIISGISVNMTTLP--TSHEAGAKQ--PLYIIIAQGGNSQLNIQFLREECAS 235

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
             +++T  D PV     +   + ++  D   L+ +L IL  RG+
Sbjct: 236 EAVVLT--DSPV---TVKPPGVEVLVLDRMSLEFILEILAQRGL 274


>gi|28900546|ref|NP_800201.1| putative riboflavin deaminase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260365428|ref|ZP_05777965.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           K5030]
 gi|260877493|ref|ZP_05889848.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           AN-5034]
 gi|260894835|ref|ZP_05903331.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           Peru-466]
 gi|28808926|dbj|BAC62034.1| putative riboflavin deaminase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308085328|gb|EFO35023.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           Peru-466]
 gi|308090602|gb|EFO40297.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           AN-5034]
 gi|308114425|gb|EFO51965.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           K5030]
          Length = 141

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 59/137 (43%), Positives = 77/137 (56%), Gaps = 1/137 (0%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
            FM  AL  S+  +     NP V C++VKD  ++  G T   G  HAEV+AL        
Sbjct: 4   EFMRRALEVSKNALPECQPNPPVGCVLVKDNQIVSEGHTQAIGGNHAEVEALNAYQGSLE 63

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127
             TAYVTLEPCS  GR+P CA  +++ GI +VVV + DPD R SGRG++ L Q GI V+ 
Sbjct: 64  SVTAYVTLEPCSFVGRTPACAVTLVKSGIGKVVVAMLDPDPRNSGRGIEILKQAGIEVEI 123

Query: 128 RMMESEGKIFLHAYLTR 144
            +   E   FL  YL +
Sbjct: 124 GLCSEEVSEFLTPYLGK 140


>gi|270684433|ref|ZP_06222817.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
          HK1212]
 gi|270316231|gb|EFA28189.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
          HK1212]
          Length = 94

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 50/93 (53%), Positives = 62/93 (66%)

Query: 1  MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
          +  SS D  FM  AL  +      T+ NPSV C++VK+G ++G G     G PHAE  AL
Sbjct: 2  LEFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVAL 61

Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFII 93
           +AGE A+GATAYVTLEPCSHYGR+PPCA  +I
Sbjct: 62 AQAGENAKGATAYVTLEPCSHYGRTPPCALGLI 94


>gi|325676732|ref|ZP_08156406.1| riboflavin biosynthesis protein RibD [Rhodococcus equi ATCC 33707]
 gi|325552514|gb|EGD22202.1| riboflavin biosynthesis protein RibD [Rhodococcus equi ATCC 33707]
          Length = 263

 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 82/252 (32%), Positives = 120/252 (47%), Gaps = 32/252 (12%)

Query: 76  LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR--MMESE 133
           LEPC+H GR+ PC++ +I+ GI  V   V DP+   +G G   L    I V    + +  
Sbjct: 1   LEPCNHQGRTGPCSRALIDAGIAAVHYSVADPNPAAAG-GADTLRAARIEVTGGLLADDA 59

Query: 134 GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAI 193
            +  L A+L RQ   R H+T K A + D     A   S  ITG  ++ +VH  RA+ DAI
Sbjct: 60  ERGPLRAWLHRQRTGRPHVTWKFAATLDGRSAAADGTSQWITGPEARARVHADRARLDAI 119

Query: 194 LVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251
           +VG GTVLADDP LT R+    L  H P+R+++        +  +  TA +         
Sbjct: 120 VVGTGTVLADDPWLTARMPDGSLAPHQPLRVVVG-------NRPVPSTARVL-------- 164

Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311
           DD    L  R  ++  I     D               +LVEGG  +A +F+ +  VD +
Sbjct: 165 DDAAPTLVLRTHDVGEILSALADQD------------DVLVEGGPRLAGAFLAAGAVDRV 212

Query: 312 ILYRSQIVIGEG 323
             Y + +V+G G
Sbjct: 213 QAYIAPVVLGAG 224


>gi|86145701|ref|ZP_01064030.1| putative riboflavin deaminase [Vibrio sp. MED222]
 gi|85836400|gb|EAQ54529.1| putative riboflavin deaminase [Vibrio sp. MED222]
          Length = 145

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/144 (40%), Positives = 81/144 (56%), Gaps = 5/144 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE---- 61
            + ++M  AL  SR  +     NP V C++VK+  V+  G T   G  HAEV+AL     
Sbjct: 1   MNQQYMLQALEASRQALPDCQPNPPVGCVLVKNDKVVSVGYTQKVGGNHAEVEALNGYDC 60

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           E   E  G TAYVTLEPCS  GR+P CA  +++ G++ VVV + DPD R +GRG+  L  
Sbjct: 61  ETDGEMEGVTAYVTLEPCSFVGRTPACASTLVKAGVKHVVVAMLDPDPRNNGRGVAILES 120

Query: 122 KGIIVD-RMMESEGKIFLHAYLTR 144
            G+ VD  + + +   FL  YL +
Sbjct: 121 HGVKVDVGLCQEQVNAFLTPYLGK 144


>gi|90578371|ref|ZP_01234182.1| putative riboflavin deaminase [Vibrio angustum S14]
 gi|90441457|gb|EAS66637.1| putative riboflavin deaminase [Vibrio angustum S14]
          Length = 146

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/140 (40%), Positives = 77/140 (55%), Gaps = 1/140 (0%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           +  FM  AL  S   +     NP V C++VK+G ++  G T   G  HAE  AL      
Sbjct: 7   EQAFMIRALLLSHQSLPACRPNPPVGCVLVKEGEIVSEGFTQPPGQHHAEAMALANYDGS 66

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
               TAYVTLEPCS  GR+P CA  ++E GI++VVV   DPD R SG+G+  L + GI V
Sbjct: 67  FTDVTAYVTLEPCSFVGRTPSCAHTLVELGIKKVVVATLDPDSRNSGKGIAVLKEAGIEV 126

Query: 127 D-RMMESEGKIFLHAYLTRQ 145
           +  + E+E   F+  YL + 
Sbjct: 127 EVGLCENEVLDFIEPYLIKN 146


>gi|302382996|ref|YP_003818819.1| bifunctional deaminase-reductase domain protein [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193624|gb|ADL01196.1| bifunctional deaminase-reductase domain protein [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 210

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/182 (36%), Positives = 100/182 (54%), Gaps = 12/182 (6%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R  IT K+A S D  IG +   S  ITG  ++ Q H LRA  DA+LVG+ TVLADDP LT
Sbjct: 2   RPRITWKVATSLDGRIGTSTGESQWITGPQAREQGHRLRATHDAVLVGVETVLADDPRLT 61

Query: 209 CRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
            RL +G     P+R++LD   +    +++ +   L    I+T  +  V+  A     I  
Sbjct: 62  VRLPDGETAADPLRVVLDSRLRTPPFARLARAGTL----ILTTREPIVIGEA----EIVR 113

Query: 268 IYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           +  D +    ++ +L  L  RGV SL++EGG  VA  F+ + +VD+I  +R+ I++G  G
Sbjct: 114 VAGDSQGRPTVEAVLETLSARGVRSLMIEGGGRVAACFVTAGVVDAIEWFRAPILLGGDG 173

Query: 325 IP 326
            P
Sbjct: 174 RP 175


>gi|153836433|ref|ZP_01989100.1| diaminohydroxyphosphoribosylamino-pyrimidine deaminase [Vibrio
           parahaemolyticus AQ3810]
 gi|260901767|ref|ZP_05910162.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           AQ4037]
 gi|149750335|gb|EDM61080.1| diaminohydroxyphosphoribosylamino-pyrimidine deaminase [Vibrio
           parahaemolyticus AQ3810]
 gi|308108841|gb|EFO46381.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           AQ4037]
          Length = 141

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/140 (42%), Positives = 77/140 (55%), Gaps = 1/140 (0%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
               FM  AL  S+  +     NP V C++VKD  ++  G T   G  HAEV+AL     
Sbjct: 1   MSQEFMRRALEVSKNALPECQPNPPVGCVLVKDNQIVSEGHTQAIGGNHAEVEALNAYQG 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
                TAYVTLEPCS  GR+P CA  +++ GI +VVV + DPD R SGRG++ L Q GI 
Sbjct: 61  SLESVTAYVTLEPCSFVGRTPACAVTLVKSGIGKVVVAMLDPDPRNSGRGIEILKQAGIE 120

Query: 126 VD-RMMESEGKIFLHAYLTR 144
           V+  +   E   FL  YL +
Sbjct: 121 VEIGLCGKEVSEFLTPYLGK 140


>gi|328470490|gb|EGF41401.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
           parahaemolyticus 10329]
          Length = 141

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/137 (43%), Positives = 77/137 (56%), Gaps = 1/137 (0%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
            FM  AL  S+  +     NP V C++VKD  ++  G T   G  HAEV+AL        
Sbjct: 4   EFMRRALEVSKNALPECQPNPPVGCVLVKDNQIVSEGHTQAIGGNHAEVEALNAYQGSLE 63

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127
             TAYVTLEPCS  GR+P CA  +++ GI +VVV + DPD R SGRG++ L Q GI V+ 
Sbjct: 64  SVTAYVTLEPCSFVGRTPACAVTLVKSGIGKVVVAMLDPDPRNSGRGIEILKQAGIEVEI 123

Query: 128 RMMESEGKIFLHAYLTR 144
            +   E   FL  YL +
Sbjct: 124 GLCGEEVSEFLTPYLGK 140


>gi|213416666|ref|ZP_03349810.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 141

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/139 (46%), Positives = 88/139 (63%), Gaps = 1/139 (0%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG +
Sbjct: 3   DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGAK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI V
Sbjct: 63  AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAV 122

Query: 127 DR-MMESEGKIFLHAYLTR 144
              +M SE +     +L R
Sbjct: 123 SHGLMMSEAEALNKGFLKR 141


>gi|254229831|ref|ZP_04923237.1| Pyrimidine deaminase [Vibrio sp. Ex25]
 gi|262395603|ref|YP_003287456.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio sp.
           Ex25]
 gi|151937667|gb|EDN56519.1| Pyrimidine deaminase [Vibrio sp. Ex25]
 gi|262339197|gb|ACY52991.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio sp.
           Ex25]
          Length = 141

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/137 (43%), Positives = 77/137 (56%), Gaps = 1/137 (0%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
            FM  AL  S+  +     NP V C++VKD  ++  G T   G  HAEV+AL        
Sbjct: 4   EFMRRALEVSKNALPECQPNPPVGCVLVKDNQIVSEGHTQAIGGNHAEVEALNAYQGSLE 63

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127
             TAYVTLEPCS  GR+P CA  +++ GI +VVV + DPD R SGRG++ L Q GI V+ 
Sbjct: 64  SVTAYVTLEPCSFVGRTPACAVTLVKSGIGKVVVAMLDPDPRNSGRGIEILKQAGIEVEI 123

Query: 128 RMMESEGKIFLHAYLTR 144
            +   E   FL  YL +
Sbjct: 124 GLCGEEVSEFLTPYLGK 140


>gi|257413677|ref|ZP_04743810.2| riboflavin biosynthesis protein RibD [Roseburia intestinalis L1-82]
 gi|257202725|gb|EEV01010.1| riboflavin biosynthesis protein RibD [Roseburia intestinalis L1-82]
          Length = 173

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/139 (39%), Positives = 80/139 (57%), Gaps = 8/139 (5%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GE 65
           R+M  A+  +    G T TNP V  ++VK+  +IG G     G  HAE +AL +    GE
Sbjct: 35  RYMRRAMELAELGRGWTKTNPVVGAVLVKEDRIIGEGYHKKFGGLHAEREALADCRSRGE 94

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +  GA  YVTLEPC HYG++PPC Q +IE GI  V V  +D +  V+G G++ L ++GI+
Sbjct: 95  DPAGADLYVTLEPCCHYGKTPPCTQAVIEAGISHVFVGAEDINPLVAGAGIRQLREQGIL 154

Query: 126 VDRMM-----ESEGKIFLH 139
           V   +     E + ++F H
Sbjct: 155 VTEGVLQEECEYQNRVFFH 173


>gi|84387508|ref|ZP_00990526.1| Probable riboflavin biosynthesis protein RibD [Vibrio splendidus
           12B01]
 gi|84377556|gb|EAP94421.1| Probable riboflavin biosynthesis protein RibD [Vibrio splendidus
           12B01]
          Length = 145

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/144 (39%), Positives = 82/144 (56%), Gaps = 5/144 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            + ++M  AL  SR  +     NP V C++VK+  V+  G T   G  HAEV+AL    +
Sbjct: 1   MNQQYMLQALEASRQALPDCQPNPPVGCVLVKNDKVVSVGYTQKVGGNHAEVEALNSYDD 60

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
               E  G TAYVTLEPCS  GR+P CA  +++ G++ VVV + DPD R +GRG+  L  
Sbjct: 61  GLDGEMEGITAYVTLEPCSFVGRTPACANTLVKAGVKHVVVAMLDPDPRNNGRGVAILES 120

Query: 122 KGIIVD-RMMESEGKIFLHAYLTR 144
            G+ VD  + +++   FL  YL +
Sbjct: 121 HGVKVDVGLCQAQVSAFLTPYLGK 144


>gi|157415842|ref|YP_001483098.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|157386806|gb|ABV53121.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|307748478|gb|ADN91748.1| Putative riboflavin specific deaminase [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315931666|gb|EFV10627.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 336

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 159/368 (43%), Gaps = 79/368 (21%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +M+ AL  +  +  LT  NP+V C+I+ K+G ++        G  HAE+ A+  A +  R
Sbjct: 15  YMNLALNEAWKYQFLTYPNPAVGCVILDKNGKILAIKAHEKAGLAHAELNAIAHAFKSLR 74

Query: 69  -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                     + A+VTLEPCSH G++PPCA+   E G +++ + 
Sbjct: 75  PEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIFIS 134

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           V D +   SG G ++L ++GI ++  +++ EGK  L  +L  Q E+      K+A+S + 
Sbjct: 135 VKDENKIASG-GAEFLKKQGIEIEFDILKEEGKKLLKPFLKWQKEQFK--LFKLALSMNG 191

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222
               +  G + ++  +S+   H +RA  D ++VG  T+  D P L  RL   +  +P   
Sbjct: 192 ----SPFGKI-VSNELSRTYAHKIRAVIDLLVVGGETIRKDHPILDARL--CKAKAPNLC 244

Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282
           IL      + D  I                 P+  +  R+     IY       K     
Sbjct: 245 ILSRQNIDNFDKNI-----------------PLFKVPNRQ-----IYTQIPSEAKF---- 278

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
                  L+ EGG     +F +   +D  ++++S  +  E  +  PL       NF  + 
Sbjct: 279 -------LMYEGGENFLKTFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKPLY 322

Query: 343 RDYFGSDV 350
           R++ GSD 
Sbjct: 323 RNFLGSDT 330


>gi|218676953|ref|YP_002395772.1| Probable riboflavin biosynthesis protein [Vibrio splendidus LGP32]
 gi|218325221|emb|CAV27160.1| Probable riboflavin biosynthesis protein [Vibrio splendidus LGP32]
          Length = 145

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/144 (40%), Positives = 81/144 (56%), Gaps = 5/144 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE---- 61
            + ++M  AL  SR  +     NP V C++VK+  V+  G T   G  HAEV+AL     
Sbjct: 1   MNQQYMLQALEASRQALPDCQPNPPVGCVLVKNDKVVSVGYTQKVGGNHAEVEALNGYDC 60

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           E   E  G TAYVTLEPCS  GR+P CA  +++ G++ VVV + DPD R +GRG+  L  
Sbjct: 61  ETDGEMEGVTAYVTLEPCSFVGRTPACASTLVKAGVKHVVVAMLDPDPRNNGRGVAILES 120

Query: 122 KGIIVD-RMMESEGKIFLHAYLTR 144
            G+ VD  + + +   FL  YL +
Sbjct: 121 HGVKVDVGLCQEQISAFLIPYLGK 144


>gi|224009578|ref|XP_002293747.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970419|gb|EED88756.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 256

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/139 (44%), Positives = 80/139 (57%), Gaps = 9/139 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQ 58
           +++ D + M  A+R +R   G T  NP+V C++V  G     +IG G     G PHAEV 
Sbjct: 97  LTTSDVQHMKLAVRLARIGYGNTFPNPAVGCVLVSHGDDSSSIIGSGFHPKAGMPHAEVF 156

Query: 59  ALEEA-GEEA---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           AL EA G +       TAYVTLEPC H G++PPCA  ++  GI RVVV   DP+ RV G 
Sbjct: 157 ALLEACGHDHFADSNVTAYVTLEPCCHEGQTPPCALSLVVAGINRVVVGFRDPNPRVDGG 216

Query: 115 GLQWLSQKGIIVDRMMESE 133
           G+Q L   GI V  +ME E
Sbjct: 217 GIQLLKDAGIDV-HVMEVE 234


>gi|329889480|ref|ZP_08267823.1| riboflavin biosynthesis protein ribD [Brevundimonas diminuta ATCC
           11568]
 gi|328844781|gb|EGF94345.1| riboflavin biosynthesis protein ribD [Brevundimonas diminuta ATCC
           11568]
          Length = 208

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/179 (36%), Positives = 94/179 (52%), Gaps = 8/179 (4%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R  + LK+A S D  I  A   S  ITG  ++ Q H LRA  DAILVG+ TVLADDPELT
Sbjct: 2   RPRVILKLATSLDGRIATATGESQWITGPEARLQGHRLRATHDAILVGVETVLADDPELT 61

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
            RL       P+R++LD   +    +K+     L   I  T    P+     + + + + 
Sbjct: 62  VRLPDYAGTHPLRVVLDSRLRTPATAKVASGNTL---IFTTAQPHPI----GQAEVVAVA 114

Query: 269 YCDCRD-LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
             D R  +  +L  L  R + S+L+EGG  VA SFI +  VD+I  +R+ +++G  G P
Sbjct: 115 PNDGRPAISAVLDALAARNIGSILIEGGGRVAASFIQAGAVDAIEWFRAPMLLGGEGRP 173


>gi|319957427|ref|YP_004168690.1| riboflavin biosynthesis protein ribd [Nitratifractor salsuginis DSM
           16511]
 gi|319419831|gb|ADV46941.1| riboflavin biosynthesis protein RibD [Nitratifractor salsuginis DSM
           16511]
          Length = 336

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 108/233 (46%), Gaps = 36/233 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  +  + GLT  NP+V C +VK+G ++        G  HAE+ A+  A E 
Sbjct: 5   DRFYMQLALGEAWRYQGLTYPNPAVGCCVVKEGRILAVEAHHKAGESHAELWAMLAAYEA 64

Query: 67  A---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                                       RG + YVTLEPC+H+GR+P CA  +    + R
Sbjct: 65  LEGREAAVDSADADAVYDFLQTVPEELFRGVSLYVTLEPCAHHGRTPSCAWALSRFPLHR 124

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAV 158
           VVV   DP +   G GL+ L+  GI +   + E E +  L  +L  Q  +R+ +  K+A 
Sbjct: 125 VVVATADP-IPGHGGGLEILADHGIEVATGVCEEEARELLEPFLIWQ--ERAFVLFKLAQ 181

Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
           + +  IG  G  S P     S   VH LRA  D +L+G  TV  D P L CR 
Sbjct: 182 TTNGRIG-GGYLSSP----ESLEHVHRLRAVVDELLIGGSTVRTDRPTLDCRF 229


>gi|28572847|ref|NP_789627.1| riboflavin biosynthesis protein RibD [Tropheryma whipplei TW08/27]
 gi|28410980|emb|CAD67365.1| riboflavin biosynthesis protein RibD [Tropheryma whipplei TW08/27]
          Length = 371

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 140/308 (45%), Gaps = 21/308 (6%)

Query: 21  HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE-EARGATAYVTLEP 78
           H  +   NP V C+I+ +D  +I +G     G  HAE+ AL  A    +    A +TLEP
Sbjct: 25  HGPVFDRNPQVGCVILDRDYQLISQGWHMGSGSEHAEIMALRGAKSILSEPYAAVITLEP 84

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIF 137
           CS  G++ PC + +++ G++ VV  V DP+      G + LS+ G+ I   ++E E    
Sbjct: 85  CSSAGQTGPCVRALLDAGVKHVVFGVHDPE----SSGAKVLSEAGVKITYGVLEREVWGL 140

Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
              ++  +V K   +  K A   D  +      S  ITG  ++   H++R+Q DAI +G 
Sbjct: 141 CAKHILPKVRKTPWVIAKRAQGLDGRMSAPDGSSKWITGPYARGHAHVIRSQVDAIAIGS 200

Query: 198 GTVLADDPELTC--RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
            T+  D+P L        L    P  +I     + S       TA         E    V
Sbjct: 201 NTLCCDNPSLRAFHPAGHLYAKQPKVVIFSGRPRRS------NTAGRGSC----ELGRCV 250

Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
               F  ++  I+    +DLKK +  L   GV SLL+EGG  +  SF+   LVD   +Y 
Sbjct: 251 RGHEFFARDPTIL--SGKDLKKDMRRLYELGVRSLLLEGGPTLLSSFVREDLVDEFYIYT 308

Query: 316 SQIVIGEG 323
           +  ++G G
Sbjct: 309 APKLLGGG 316


>gi|162146949|ref|YP_001601410.1| riboflavin biosynthesis protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161785526|emb|CAP55097.1| Riboflavin biosynthesis protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 366

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 135/313 (43%), Gaps = 47/313 (15%)

Query: 21  HVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEA---RGATAYVTL 76
           ++G T+  P V C I+   G ++        G PHAE  AL +  E+    R + A VTL
Sbjct: 29  YMGATAPKPPVGCAILDARGEILTVAGHHRAGAPHAEALALRQCAEQGLMDRASVAVVTL 88

Query: 77  EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI 136
           EPC+H GR+ PC++ I+   IR V V   DP+ RV+G G   L   G  V  + E+ G++
Sbjct: 89  EPCNHTGRTGPCSEAILASPIRTVWVGAADPNPRVAGGGAARLRAAGCAVYVLGEAGGEL 148

Query: 137 --------------FLHAYLTRQVEKRSHITLKIAVSQD-NMIGMAGCGSVPITGFISKN 181
                          +  ++      R+ +T+K AV  D +MI  A  G    T   +  
Sbjct: 149 LPDPFPELAAACRALIAPFVHWSRTGRAWLTVKQAVDADGSMIPPA--GRTTFTSDAALT 206

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR--IILDPHFKLSLDSKIIKT 239
             H LR  +DA++ G GTVLAD P L  R          R  ++ D   ++  D +    
Sbjct: 207 LAHRLRRATDAVVTGSGTVLADRPGLDVRRVADHADRAARPLVVCDRRGRVPEDWRA--- 263

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
                              A R +  ++  CD  D+ +L  +L   GV   LVE G A+ 
Sbjct: 264 -------------------AARGRGFDVRTCD--DITRLPAMLGADGVLWALVEAGPALL 302

Query: 300 HSFINSRLVDSII 312
            +   + L D  +
Sbjct: 303 DALRAAGLWDDWL 315


>gi|222823268|ref|YP_002574841.1| riboflavin biosynthesis protein [Campylobacter lari RM2100]
 gi|222538489|gb|ACM63590.1| riboflavin biosynthesis protein [Campylobacter lari RM2100]
          Length = 330

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 121/254 (47%), Gaps = 37/254 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEA- 67
           +M+ A+  +  +  LT  NP+V C+I+ K+G ++        G  HAE++A+ +A +E  
Sbjct: 6   YMNLAIDEAWKYQFLTYPNPAVGCVILDKNGKILSIKAHKEAGKAHAELEAVSKALKELD 65

Query: 68  ------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                   +GATAYV+LEPC+H G++PPCA+   E G   V + 
Sbjct: 66  PNLDLPQDANDLHEFICKNHQGLLKGATAYVSLEPCNHQGKTPPCAKLFSELGFSEVFIA 125

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           + D     SG G+++L  KGI V   + E   K  L  +L  Q  K S    K+A+S   
Sbjct: 126 IKDEHKLASG-GVEFLKSKGIKVQIGICEKRAKELLKPFLKWQ--KSSFKIFKLALS--- 179

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222
            +  +  G + ++   S+   H LR++ D ++VG  T+  D P L  RL   Q  +P   
Sbjct: 180 -LNGSASGKI-VSSKASRAYAHALRSKLDLLVVGGETIRHDRPILDARL--AQAKAPNLC 235

Query: 223 ILDPHFKLSLDSKI 236
           IL      S D KI
Sbjct: 236 ILSHQNLESFDQKI 249


>gi|315497946|ref|YP_004086750.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Asticcacaulis excentricus CB 48]
 gi|315415958|gb|ADU12599.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Asticcacaulis excentricus CB 48]
          Length = 147

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 58/141 (41%), Positives = 79/141 (56%), Gaps = 6/141 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+R M+ A+  +   +G T  NP V C+IVKDG+VI    T  GG PHAE  AL +    
Sbjct: 3   DSRHMARAIAMATAQLGRTVPNPPVGCVIVKDGVVIAEAATGDGGRPHAEEAALAQLDHR 62

Query: 67  ARGATAYVTLEPC---SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           A GATAYVTLEPC   SH G S  C+Q ++E G+ RVV    DP    S  G+  +S+ G
Sbjct: 63  AEGATAYVTLEPCGARSHGGLS--CSQRLVEAGVSRVVFACHDPSPFASHLGIICMSEAG 120

Query: 124 IIVDR-MMESEGKIFLHAYLT 143
           + V+  +M  E    +  ++ 
Sbjct: 121 LKVETGLMADEAAALIADFVN 141


>gi|28493654|ref|NP_787815.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Tropheryma
           whipplei str. Twist]
 gi|28476696|gb|AAO44784.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Tropheryma
           whipplei str. Twist]
          Length = 371

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 141/310 (45%), Gaps = 25/310 (8%)

Query: 21  HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE-EARGATAYVTLEP 78
           H  +   NP V C+I+ +D  +I +G     G  HAE+ AL  A    +   TA +TLEP
Sbjct: 25  HGPVFDRNPQVGCVILDRDYQLISQGWHMGSGSEHAEIMALRGAKSILSEPYTAVITLEP 84

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIF 137
           CS  G++ PC + +++ G++ VV  V DP+      G + LS+ G+ I   ++E E    
Sbjct: 85  CSSAGQTGPCVRALLDAGVKHVVFGVHDPE----SSGAKVLSEAGVKITYGVLEREVWGL 140

Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
              ++  +V K   +  K A   D  +      S  ITG  ++   H++R+Q DAI +G 
Sbjct: 141 CAKHILPKVRKTPWVIAKRAQGLDGRMSAPDGSSKWITGPYARGHAHVIRSQVDAIAIGS 200

Query: 198 GTVLADDPELTC--RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE--NDD 253
            T+  D+P L        L    P  +I     + S ++    +  L   +   E    D
Sbjct: 201 NTLCCDNPSLRAFHPAGHLYAKQPKVVIFSGRPRRS-NTAGRGSCELGRCVRGHEVFARD 259

Query: 254 PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
           P +                +DLKK +  L   GV SLL+EGG  +  SF+   LVD   +
Sbjct: 260 PTI-------------LSGKDLKKDMRRLYELGVRSLLLEGGPTLLSSFVREDLVDEFYI 306

Query: 314 YRSQIVIGEG 323
           Y +  ++G G
Sbjct: 307 YTAPKLLGGG 316


>gi|121612362|ref|YP_001001265.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|121504161|gb|EAQ72749.2| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 336

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 158/368 (42%), Gaps = 79/368 (21%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +M+ AL  +  +  LT  NP+V C+I+ K+G ++        G  HAE+ A+  A +  R
Sbjct: 15  YMNLALNEAWKYQFLTYPNPAVGCVILDKNGKILAIKAHEKAGLAHAELNAITHAFKSLR 74

Query: 69  -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                     + A+VTLEPCSH G++PPCA+   E G +++ + 
Sbjct: 75  PEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIFIS 134

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           V D +   SG G ++L ++GI V+  +++ EGK  L  +L  Q  K      K+A+S + 
Sbjct: 135 VKDGNKIASG-GAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQ--KGQFKLFKLALSMNG 191

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222
               +  G + ++  +S+   H +RA  D ++VG  T+  D P L  RL   +  +P   
Sbjct: 192 ----SPFGKI-VSNELSRTYAHKIRAVIDLLVVGGETIRKDHPILDARL--CKAKAPNLC 244

Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282
           IL      + D  I                 P+  +  R+     IY       K     
Sbjct: 245 ILSRQNIDNFDKNI-----------------PLFKVPNRQ-----IYTQIPSEAKF---- 278

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
                  L+ EGG     +F +   +D  ++++S  +  E  +  PL       NF  + 
Sbjct: 279 -------LMYEGGENFLKTFKDG--IDMFLIFQSSSLNDEKNVTIPL-------NFKPLY 322

Query: 343 RDYFGSDV 350
           R++ GSD 
Sbjct: 323 RNFLGSDT 330


>gi|89074668|ref|ZP_01161133.1| Putative riboflavin biosynthesis protein RibD [Photobacterium sp.
           SKA34]
 gi|89049606|gb|EAR55166.1| Putative riboflavin biosynthesis protein RibD [Photobacterium sp.
           SKA34]
          Length = 146

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 56/137 (40%), Positives = 75/137 (54%), Gaps = 1/137 (0%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  AL  S   +     NP V C++VK+G ++  G T   G  HAE  AL         
Sbjct: 10  FMIRALLLSHQSLPDCRPNPPVGCVLVKNGEIMSEGFTQPPGQYHAEAMALANYHGSFTD 69

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
            TAYVTLEPCS  GR+P CA   +E GI++VVV   DPD R SG+G+  L + G+ V+  
Sbjct: 70  VTAYVTLEPCSFVGRTPSCAHTFVELGIKKVVVATLDPDSRNSGKGIAILKEAGVEVEVG 129

Query: 129 MMESEGKIFLHAYLTRQ 145
           + E+E   F+  YL + 
Sbjct: 130 LCENEVLDFIEPYLIKN 146


>gi|325860399|ref|ZP_08173511.1| riboflavin biosynthesis protein RibD [Prevotella denticola CRIS
           18C-A]
 gi|325482057|gb|EGC85078.1| riboflavin biosynthesis protein RibD [Prevotella denticola CRIS
           18C-A]
          Length = 380

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 86/166 (51%), Gaps = 6/166 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
           M     D  +M   L+ +R    L   NP V  +IV KDG +IG G     G  H+EV A
Sbjct: 1   MKQEETDEIYMRRCLQLARNGQQLAKPNPMVGAVIVSKDGRIIGEGYHVRCGEGHSEVNA 60

Query: 60  LEEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
                +E       AT YV+LEPCSHYG++PPCA  II  G+RRVV    DP  +V GRG
Sbjct: 61  FASVRKEDEALLHEATVYVSLEPCSHYGKTPPCADLIISKGVRRVVCGCIDPFSKVQGRG 120

Query: 116 LQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
           ++ L + GI V   ++E E       ++T     R ++ LK A ++
Sbjct: 121 VKRLREAGIDVTVGVLEKECLELNKRFITYNTHHRPYVILKWAQTK 166


>gi|254418857|ref|ZP_05032581.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Brevundimonas sp. BAL3]
 gi|196185034|gb|EDX80010.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Brevundimonas sp. BAL3]
          Length = 208

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 66/177 (37%), Positives = 93/177 (52%), Gaps = 6/177 (3%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
            +TLK+A S D  I  A   S  ITG  ++ + H LRA  DAILVG+ TVL DDPELT R
Sbjct: 2   RVTLKLATSLDGRIATATGESRWITGEAARLEGHRLRAGHDAILVGVETVLKDDPELTAR 61

Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270
           L G     P+R++LD   +    +K+     L   I+      PV A   R+  +     
Sbjct: 62  LPGRSVDQPLRVVLDSRLRTPATAKLAGENTL---ILTAVEPQPVGAAQVRR--VEAEDE 116

Query: 271 DCRD-LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           D R  +  +L  L   GV S+L+EGG  VA +F+ +  VD +  +R+ I++G  G P
Sbjct: 117 DGRPAIPAVLKALKAAGVDSVLIEGGGQVAAAFLRAGAVDRLEWFRAPILLGGEGRP 173


>gi|86152942|ref|ZP_01071147.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|167006160|ref|ZP_02271918.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|85843827|gb|EAQ61037.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni HB93-13]
          Length = 326

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 158/368 (42%), Gaps = 79/368 (21%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +M+ AL  +  +  LT  NP+V C+I+ K+G ++        G  HAE+ A+  A +  R
Sbjct: 5   YMNLALNEAWKYQFLTYPNPAVGCVILDKNGKILAIKAHEKAGLAHAELNAITHAFKSLR 64

Query: 69  -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                     + A+VTLEPCSH G++PPCA+   E G +++ + 
Sbjct: 65  PEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIFIS 124

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           V D +   SG G ++L ++GI V+  +++ EGK  L  +L  Q  K      K+A+S + 
Sbjct: 125 VKDGNKIASG-GAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQ--KGQFKLFKLALSMNG 181

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222
               +  G + ++  +S+   H +RA  D ++VG  T+  D P L  RL   +  +P   
Sbjct: 182 ----SPFGKI-VSNELSRTYAHKIRAVIDLLVVGGETIRKDHPILDARL--CKAKAPNLC 234

Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282
           IL      + D  I                 P+  +  R+     IY       K     
Sbjct: 235 ILSRQNIDNFDKNI-----------------PLFKVPNRQ-----IYTQIPSEAKF---- 268

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
                  L+ EGG     +F +   +D  ++++S  +  E  +  PL       NF  + 
Sbjct: 269 -------LMYEGGENFLKTFKDG--IDMFLIFQSSSLNDEKNVTIPL-------NFKPLY 312

Query: 343 RDYFGSDV 350
           R++ GSD 
Sbjct: 313 RNFLGSDT 320


>gi|170084365|ref|XP_001873406.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650958|gb|EDR15198.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 237

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 108/235 (45%), Gaps = 17/235 (7%)

Query: 137 FLHAYLTRQVEK----RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
           FL + L R  ++    R H+TL  A S D  I       + ++G  S    H LR+  DA
Sbjct: 5   FLISLLARYSQQPPSIRPHVTLTFAQSTDAKIAAIPGKQLILSGDESMQMTHWLRSMHDA 64

Query: 193 ILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA----PVIIV 248
           ILVGIGT L DDP+L  R      + P  IILD H +LS   K++          P II 
Sbjct: 65  ILVGIGTALNDDPQLNTRRLPPPHNLPRPIILDSHLRLSTSCKLLNNFRAGSGRRPWIIS 124

Query: 249 TENDDPVL---ALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHS 301
           T + DP       A  +   NII     +    +  +L  L  R V SL+VEGGA V  S
Sbjct: 125 TPSQDPSWISRKDALEQAGANIIEIPSLNGRLSVPAVLQSLRDRDVRSLMVEGGATVIAS 184

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
           F ++ +VD++I+  +  ++G+ G+   L   +  + F        G D    ++ 
Sbjct: 185 FFSASVVDTLIITTAPTLVGDNGLGYTLAGSH--QQFTLAHTQLLGKDTVTSWVA 237


>gi|167849555|ref|ZP_02475063.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
          B7210]
 gi|167922717|ref|ZP_02509808.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
          BCC215]
          Length = 94

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/90 (51%), Positives = 57/90 (63%)

Query: 4  SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
          S  D   M+ ALR +   +  T  NP V C+I +    +G G     G PHAEV AL EA
Sbjct: 5  SDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALREA 64

Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFII 93
          GE ARGATAYVTLEPC+H+GR+PPCA  ++
Sbjct: 65 GERARGATAYVTLEPCAHFGRTPPCANALV 94


>gi|167828089|ref|ZP_02459560.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
          9]
          Length = 97

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/90 (51%), Positives = 57/90 (63%)

Query: 4  SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
          S  D   M+ ALR +   +  T  NP V C+I +    +G G     G PHAEV AL EA
Sbjct: 5  SDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALREA 64

Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFII 93
          GE ARGATAYVTLEPC+H+GR+PPCA  ++
Sbjct: 65 GERARGATAYVTLEPCAHFGRTPPCANALV 94


>gi|57168828|ref|ZP_00367959.1| riboflavin biosynthesis protein (ribG) [Campylobacter coli RM2228]
 gi|305432431|ref|ZP_07401593.1| riboflavin biosynthesis protein RibD [Campylobacter coli JV20]
 gi|57019875|gb|EAL56558.1| riboflavin biosynthesis protein (ribG) [Campylobacter coli RM2228]
 gi|304444470|gb|EFM37121.1| riboflavin biosynthesis protein RibD [Campylobacter coli JV20]
          Length = 326

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 162/368 (44%), Gaps = 79/368 (21%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA----- 63
           +M+ AL  +  +  LT  NP+V C+I+ K+  ++        GC HAE+ A+  A     
Sbjct: 5   YMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGCAHAELNAIAHAFTNLN 64

Query: 64  -----GEEA---------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                 +EA               + + A+VTLEPCSH G++PPCA+   E G +++ + 
Sbjct: 65  PEISLPQEANAMHEFICKNHRGIFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIFIS 124

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           V D +  ++ +G ++L ++G+ ++  +++ EGK  L  +L  Q  K      K+A+S + 
Sbjct: 125 VKDEN-EIASKGAEFLKKQGVEIEFGVLKDEGKKLLKPFLKWQ--KGQFKLFKLALSMNG 181

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222
               +  G + ++  +S+   H +R+  D +++G  T+  D P L  RL   +  +P   
Sbjct: 182 ----SPFGKI-VSNELSRTYAHKIRSVIDLLVLGGETIRKDRPILDARL--CKGKAPNLC 234

Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282
           IL      + D  I                 P+ ++  R+     IY    +  K     
Sbjct: 235 ILSHQNLENFDKSI-----------------PLFSVPHRQ-----IYTQIPNKAKF---- 268

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
                  L+ EGG      F +   +D  ++++S  +  E  +  PL       NF  + 
Sbjct: 269 -------LMYEGGENFLKKFKDE--MDMFLIFQSSSLNDEKNVTMPL-------NFKPLY 312

Query: 343 RDYFGSDV 350
           R++ GSD 
Sbjct: 313 RNFLGSDT 320


>gi|229589688|ref|YP_002871807.1| putative riboflavin biosynthesis deaminase [Pseudomonas fluorescens
           SBW25]
 gi|229361554|emb|CAY48431.1| putative riboflavin biosynthesis deaminase [Pseudomonas fluorescens
           SBW25]
          Length = 156

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/126 (42%), Positives = 69/126 (54%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           MP +  +  FM  AL   R  +     NP V C++V+D +VI +G T   G  HAE  AL
Sbjct: 1   MPNTLSNTDFMQLALAQGRLALPECLPNPPVGCVLVQDNMVISQGYTQAPGFHHAEAMAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                E    TA+VTLEPCS +GR+P CA  +I  G+  V V + DPD R SG G++ L 
Sbjct: 61  SRLTNECSAVTAFVTLEPCSFHGRTPSCALALINSGVETVFVGLLDPDPRNSGAGIRMLR 120

Query: 121 QKGIIV 126
             GI V
Sbjct: 121 DAGITV 126


>gi|167898152|ref|ZP_02485554.1| riboflavin biosynthesis protein [Burkholderia pseudomallei 7894]
          Length = 90

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/86 (53%), Positives = 55/86 (63%)

Query: 4  SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
          S  D   M+ ALR +   +  T  NP V C+I +    +G G     G PHAEV AL EA
Sbjct: 5  SDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALREA 64

Query: 64 GEEARGATAYVTLEPCSHYGRSPPCA 89
          GE ARGATAYVTLEPC+H+GR+PPCA
Sbjct: 65 GERARGATAYVTLEPCAHFGRTPPCA 90


>gi|145637248|ref|ZP_01792909.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
           PittHH]
 gi|145269500|gb|EDK09442.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
           PittHH]
          Length = 274

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 120/238 (50%), Gaps = 16/238 (6%)

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
           +V+  + DP+ +V+G+GL+ LS  GI     ++  + +     +L R  +    + LK+A
Sbjct: 2   KVIAAMQDPNPQVAGKGLKMLSDAGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLA 61

Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH 217
           +S D    MA   S  ITG  +++ V  +RA+S A+L    TV+ADDP L  R +   E+
Sbjct: 62  MSLDGRTAMASGESKWITGPDARSDVQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPEN 121

Query: 218 -----------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
                       P+R+ILD   ++    K+  T   +PV +V+     +    F      
Sbjct: 122 LKTEYKKEDLRQPVRVILDSQHRIQPTHKLFLTH--SPVWLVSSETRDL--TGFPDFCEQ 177

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           II      LK+L+  L  R + +L VE GA +A S I+++LVD +I+Y +  ++G+  
Sbjct: 178 IILPKENLLKELMRELGKRQINTLWVEAGANLAGSLIDAKLVDELIIYIAPKLLGDNA 235


>gi|260943049|ref|XP_002615823.1| hypothetical protein CLUG_04705 [Clavispora lusitaniae ATCC 42720]
 gi|238851113|gb|EEQ40577.1| hypothetical protein CLUG_04705 [Clavispora lusitaniae ATCC 42720]
          Length = 243

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 103/202 (50%), Gaps = 17/202 (8%)

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
           FL  YL  Q   R  +TL  A S D+ I  A      I+   +K   H LRA  D+ILVG
Sbjct: 13  FLKEYLPSQRTDRPFVTLTWAQSLDSRIAAAPGLQTKISHAETKTMTHYLRANHDSILVG 72

Query: 197 IGTVLADDPELTCRLNGLQEHSPMR-IILDPHFKLSLDSKIIKTAL-----LAPVIIV-- 248
           IGTVLADDP+L CR      +S +R +++DPH K       +         LAP I+V  
Sbjct: 73  IGTVLADDPKLNCRYG----NSHIRPVVVDPHGKWDYSKSTLHKVCAEGKGLAPFILVGA 128

Query: 249 -----TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
                +EN   + A   +   I+       + +++L +L  + + S+++EGGA V +S +
Sbjct: 129 QVSPSSENKTNLSAQGGQFITIDFSLDRSLNWQRILHVLHQKDIASVMIEGGADVINSLL 188

Query: 304 NSRLVDSIILYRSQIVIGEGGI 325
            S LVDS+I+    + +G+ G+
Sbjct: 189 KSDLVDSVIVTVGPVFLGKDGV 210


>gi|329848658|ref|ZP_08263686.1| riboflavin biosynthesis protein ribD [Asticcacaulis biprosthecum
           C19]
 gi|328843721|gb|EGF93290.1| riboflavin biosynthesis protein ribD [Asticcacaulis biprosthecum
           C19]
          Length = 299

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/119 (46%), Positives = 70/119 (58%), Gaps = 3/119 (2%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  A+  +R   G T  NP+V C++VKD +V+G G T  GG PHAE  AL+ AG+ ARG
Sbjct: 101 FMRQAIALAR--PGHTWPNPAVGCVLVKDDVVVGEGATGDGGRPHAEENALDMAGDVARG 158

Query: 70  ATAYVTLEPCSHYGRS-PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           ATAYVTLEPC         C++ ++  G+ RVV   DDP    S  G Q L   GI V+
Sbjct: 159 ATAYVTLEPCGKRSTGCASCSERLVAAGVARVVYACDDPSPFASHVGPQRLRDAGITVE 217


>gi|254445886|ref|ZP_05059362.1| riboflavin biosynthesis protein RibD [Verrucomicrobiae bacterium
           DG1235]
 gi|198260194|gb|EDY84502.1| riboflavin biosynthesis protein RibD [Verrucomicrobiae bacterium
           DG1235]
          Length = 377

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 147/354 (41%), Gaps = 15/354 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR-G 69
           M  AL  +R   G T   P +   +V+ G V+        G    EV+  E  G + + G
Sbjct: 1   MKVALEEARKGWGCTHPQPMIGAALVEAGQVVATSYIEQPGSTAPEVRLFERLGRKPKEG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           A+ ++TLEP     R     + II+ G+  VV+   DP    + +G   L + G+ V+R 
Sbjct: 61  ASLFLTLEPGPSSNRLESGVRAIIDSGVSYVVIGASDPMPEHANKGADALKEGGVKVERR 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHI-TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +  E    L+      V+ R  I   K A + D  I      S  ITG  ++  V   R 
Sbjct: 121 ILIEDCEDLNIISNFWVQNRIPIFAAKSATTLDGKIACRSGESKWITGEQARQNVMKWRR 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI--IKTALLAPVI 246
              +I VG GT++ DDP LT R+ G  E  PMR + D   + ++   +  I T       
Sbjct: 181 LFPSIAVGAGTLVEDDPRLTSRIEGEPEWCPMRFVFDGLLRTAMGQYLPSIYTDDFRDNT 240

Query: 247 IVTENDDPVLALAFR--KKNINIIYCDCRDLKKLLTILVGR----GVTSLLVEGGAAVAH 300
           IV   D        R   + +N+      ++K   ++   R    G+  +  EGG+ +  
Sbjct: 241 IVVTTDAAGTGYIRRLETEGVNVWVLPVENMKVPFSVFRKRCADVGINGVYFEGGSRLVS 300

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSD 349
             ++ R ++    YR+ I++G+    S       EK         VR + FG D
Sbjct: 301 ELLHMRELNYHFNYRAPILLGDDKAKSVYRGLRTEKLAQAIRLEKVRHEMFGDD 354


>gi|296112128|ref|YP_003622510.1| riboflavin-specific
           deaminase(diaminohydroxyphosphoribosylaminopyrimidine
           deaminase) [Leuconostoc kimchii IMSNU 11154]
 gi|295833660|gb|ADG41541.1| riboflavin-specific
           deaminase(diaminohydroxyphosphoribosylaminopyrimidine
           deaminase) [Leuconostoc kimchii IMSNU 11154]
          Length = 248

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 107/229 (46%), Gaps = 11/229 (4%)

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL 154
            G+RRVVV   DP+   +G+G+  L   G+ VD +  +        +      K+ ++ L
Sbjct: 4   WGLRRVVVGSIDPNPTTNGQGIALLKAAGVEVDVLNTNHSACLNPEFYYYFQSKKPYVQL 63

Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214
           K+ VS+D  +         +T   +   VH  RA   AI++G  T+L D P+LT RL  +
Sbjct: 64  KLVVSKDGFVSAGHHKRTKLTDARADIDVHQERAAKSAIMIGSQTLLVDQPQLTVRLVAI 123

Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274
               PMR+++D   +L               II TEN      +AF  +N N +Y     
Sbjct: 124 DHQQPMRVVIDRRGRLQNSHFDFSNRW----IIYTEN------VAFANQNHN-VYLMTHG 172

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           L  +L  L  + + S+++EGG  + ++FI   L   +++Y +   +G G
Sbjct: 173 LAGVLRHLAQQNIQSVMIEGGPKLMNAFIAENLWQEMLIYETNATLGSG 221


>gi|148925766|ref|ZP_01809454.1| putative riboflavin-specific deaminase [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145845776|gb|EDK22867.1| putative riboflavin-specific deaminase [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 336

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 157/368 (42%), Gaps = 79/368 (21%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +M+ AL  +  +  LT  NP+V C+I+ K+  ++        G  HAE+ A+  A +  R
Sbjct: 15  YMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKSLR 74

Query: 69  -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                     + A+VTLEPCSH G++PPCA+   E G +++ + 
Sbjct: 75  PEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIFIS 134

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           V D +   SG G ++L ++GI V+  +++ EGK  L  +L  Q  K      K+A+S + 
Sbjct: 135 VKDGNKIASG-GAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQ--KGQFKLFKLALSMNG 191

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222
               +  G + ++  +S+   H +RA  D ++VG  T+  D P L  RL   +  +P   
Sbjct: 192 ----SPFGKI-VSNELSRTYAHKIRAVIDLLVVGGETIRKDHPILDARL--CKAKAPNLC 244

Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282
           IL      + D  I                 P+  +  R+     IY       K     
Sbjct: 245 ILSRQNIDNFDKNI-----------------PLFKVPNRQ-----IYTQIPSEAKF---- 278

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
                  L+ EGG     +F +   +D  ++++S  +  E  +  PL       NF  + 
Sbjct: 279 -------LMYEGGENFLKTFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKPLY 322

Query: 343 RDYFGSDV 350
           R++ GSD 
Sbjct: 323 RNFLGSDT 330


>gi|254168441|ref|ZP_04875285.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
           [Aciduliprofundum boonei T469]
 gi|197622496|gb|EDY35067.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
           [Aciduliprofundum boonei T469]
          Length = 217

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 111/215 (51%), Gaps = 18/215 (8%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R  + +  A+S D  I + G   + I+      +VH +RA  DAILVGI T+L DDP+LT
Sbjct: 3   RPKVIINAAMSVDGKIALVGGKRIKISDEEDFKRVHKMRASVDAILVGINTILKDDPKLT 62

Query: 209 CRLNG-LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
            +    +   +P+R++LD   ++  +++++ +  +A  II T  +  +  L     N  I
Sbjct: 63  VKEKYVVNAKNPVRVVLDSKLRIPQNARVLNS--MAKTIIATTENAKLGEL-----NAEI 115

Query: 268 IYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           + C  +  DL+ LL  L  RG+ S++VEGG  V  SF+   LVD + ++   +VIG G  
Sbjct: 116 VICGKNKVDLRCLLNELWKRGIKSVMVEGGGTVISSFLRENLVDELNVFVGSLVIGGGA- 174

Query: 326 PSPLEEGYLEKNFMCVRRDYF------GSDVCLEY 354
            S L EG   KN   V R  F      GS + L Y
Sbjct: 175 -SSLVEGIGAKNENEVIRLKFLECKPLGSGILLRY 208


>gi|327400817|ref|YP_004341656.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
           pyrimidine1-reductase [Archaeoglobus veneficus SNP6]
 gi|327316325|gb|AEA46941.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
           pyrimidine1-reductase [Archaeoglobus veneficus SNP6]
          Length = 226

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 97/183 (53%), Gaps = 8/183 (4%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R H+ + +A S D  I       + I+      +V  LRA+SDAI+VGIGTVL+DDP LT
Sbjct: 6   RPHVFINVAASADGRISDESRRQIRISCEEDMQRVDRLRAESDAIVVGIGTVLSDDPRLT 65

Query: 209 CRLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
            +   L+E         +P+R+++D   +  L+++++       V +    D+  +A   
Sbjct: 66  VKSQALREERVKNGRTPNPLRVVVDSRARTPLNARVLDGEAETLVAVSDLADEERVAALR 125

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
            K ++ +   +  DL+ L+  L   GV  ++VEGGA + HS I   LVD I++Y   ++I
Sbjct: 126 EKASVFVAGQEKVDLRALMEYLYSIGVRRVMVEGGARLNHSLIAEGLVDEIMVYYGGMII 185

Query: 321 GEG 323
           G G
Sbjct: 186 GNG 188


>gi|315639223|ref|ZP_07894385.1| riboflavin biosynthesis protein RibD [Campylobacter upsaliensis
           JV21]
 gi|315480549|gb|EFU71191.1| riboflavin biosynthesis protein RibD [Campylobacter upsaliensis
           JV21]
          Length = 327

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 115/231 (49%), Gaps = 35/231 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA----- 63
           +MS AL+ +  +  LT  NP+V C+I+ K+  ++        G  HAE+ A++EA     
Sbjct: 5   YMSLALKEAWKYQFLTYPNPAVGCVILDKNNQILSIKAHEKQGEAHAELNAIKEALKLLK 64

Query: 64  --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                +  + ATA+VTLEPC+H G++PPCA+       ++V V 
Sbjct: 65  PEFNFPKEPNALHEFILTNHQKLLQNATAFVTLEPCAHQGKTPPCAKLFSTLEFKKVFVS 124

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           V D +   SG G ++L Q GI+V+  ++E EG+  L  +L  Q  K +    K+A+S   
Sbjct: 125 VKDENQIASG-GAEFLRQNGILVEMGILEKEGRELLKPFLKWQ--KGAFKLFKLALS--- 178

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213
            +  +  G   ++   S+   H +R+  D ++VG GT+  D P L  RL G
Sbjct: 179 -LNGSALGKF-VSNETSRIYAHQIRSIIDLLVVGGGTLRKDRPILDSRLCG 227


>gi|259506813|ref|ZP_05749713.1| riboflavin biosynthesis protein RibD [Corynebacterium efficiens
           YS-314]
 gi|259165599|gb|EEW50153.1| riboflavin biosynthesis protein RibD [Corynebacterium efficiens
           YS-314]
          Length = 254

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 111/248 (44%), Gaps = 35/248 (14%)

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
           PC+H GR+ PC+Q +I+ GI RV     DP  + +G G   L Q G  VD  +       
Sbjct: 1   PCNHTGRTGPCSQALIDAGIARVFYANPDPFPQAAG-GADHLRQAG--VDTHLLGLPVPT 57

Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
           L  +L      R HITLK A + D         S  ITG  ++  VH  R + DAI+VG 
Sbjct: 58  LSPWLRATKLGRPHITLKFAGTLDGFAAATDGTSQWITGETARAHVHADRTRRDAIIVGT 117

Query: 198 GTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
           GT L D+P LT R   GL +H P R+++                             PV 
Sbjct: 118 GTALTDNPSLTARGPAGLYDHQPRRVVI--------------------------GRRPVP 151

Query: 257 ALAFRKKNINII-YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
           A      N++ + +     + + L  L   G   +L+EGG  +A + + + L+D+I  Y 
Sbjct: 152 A----GSNLDRLGFEQYPGIDEALAALWESGCRDVLLEGGPTLAGAMLRAGLIDAIRAYV 207

Query: 316 SQIVIGEG 323
           +  ++G G
Sbjct: 208 APAILGAG 215


>gi|283957008|ref|ZP_06374480.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791509|gb|EFC30306.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Campylobacter jejuni subsp. jejuni 1336]
          Length = 326

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 156/368 (42%), Gaps = 79/368 (21%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +M+ AL  +  +  LT  NP+V C+I+ K+  ++        G  HAE+ A+  A +  R
Sbjct: 5   YMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKSLR 64

Query: 69  -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                     + A+VTLEPCSH G++PPCA+   E G +++ + 
Sbjct: 65  PEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIFIS 124

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           V D +   SG G ++L ++GI V+  +++ EGK  L  +L  Q  K      K+A+S + 
Sbjct: 125 VKDENKIASG-GAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQ--KGQFKLFKLALSMNG 181

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222
               +  G + ++  +S+   H +RA  D ++VG  T+  D P L  RL   +  +P   
Sbjct: 182 ----SPFGKI-VSNDLSRTYTHKIRAVIDLLVVGGETIRKDHPILDARL--CKAKAPNLC 234

Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282
           IL      + D  I                 P+  +  R+     IY       K     
Sbjct: 235 ILSRQNIDNFDKNI-----------------PLFKVPNRQ-----IYTQIPSEAKF---- 268

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
                  L+ EGG      F +   +D  ++++S  +  E  +  PL       NF  + 
Sbjct: 269 -------LMYEGGENFLKIFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKPLY 312

Query: 343 RDYFGSDV 350
           R++ GSD 
Sbjct: 313 RNFLGSDT 320


>gi|57238634|ref|YP_179765.1| riboflavin biosynthesis protein RibD, putative [Campylobacter
           jejuni RM1221]
 gi|57167438|gb|AAW36217.1| riboflavin biosynthesis protein RibD, putative [Campylobacter
           jejuni RM1221]
 gi|315059073|gb|ADT73402.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Campylobacter jejuni subsp. jejuni S3]
          Length = 326

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 156/368 (42%), Gaps = 79/368 (21%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +M+ AL  +  +  LT  NP+V C+I+ K+  ++        G  HAE+ A+  A +  R
Sbjct: 5   YMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKSLR 64

Query: 69  -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                     + A+VTLEPCSH G++PPCA+   E G +++ + 
Sbjct: 65  PEISLPKEVNALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIFIS 124

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           V D +   SG G ++L ++GI V+  +++ EGK  L  +L  Q  K      K+A+S + 
Sbjct: 125 VKDENKIASG-GAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQ--KGQFKLFKLALSMNG 181

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222
               +  G + ++  +S+   H +RA  D ++VG  T+  D P L  RL   +  +P   
Sbjct: 182 ----SPFGKI-VSNKLSRTYAHKIRAVIDLLVVGGETIRKDRPILDARL--CKAKAPNLC 234

Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282
           IL      + D  I                 P+  +  R+     IY       K     
Sbjct: 235 ILSRQNIDNFDKNI-----------------PLFKVPNRQ-----IYTQIPSEAKF---- 268

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
                  L+ EGG      F +   +D  ++++S  +  E  +  PL       NF  + 
Sbjct: 269 -------LMYEGGENFLKIFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKPLY 312

Query: 343 RDYFGSDV 350
           R++ GSD 
Sbjct: 313 RNFLGSDT 320


>gi|283953762|ref|ZP_06371293.1| riboflavin biosynthesis protein RibD, putative [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283794803|gb|EFC33541.1| riboflavin biosynthesis protein RibD, putative [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 326

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 114/229 (49%), Gaps = 35/229 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA----- 63
           +M+ AL  +  +  LT  NP+V C+I+ K+G ++        G  HAE+  +  A     
Sbjct: 5   YMNLALNEAWKYQFLTYPNPAVGCVILDKNGKILAIKAHEKAGFAHAELNTIAHAFKNLN 64

Query: 64  -----GEEA---------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                 +EA               + + A+VTLEPCSH G++PPCA+   + G ++V + 
Sbjct: 65  PEISLPKEANAMHKFICKNHRGIFKDSIAFVTLEPCSHQGKTPPCAKLFSDLGFKKVFIS 124

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           V D +   SG G  +L ++GI V+  ++E EGK  L  +L  Q E+      K+A+S + 
Sbjct: 125 VKDENKVASG-GADFLKKQGIEVEFGILEEEGKKLLKPFLKWQKEQFK--LFKLALSMNG 181

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
               +  G + ++  +S+   H +RA  D ++VG  T+  D P L  RL
Sbjct: 182 ----SPFGKI-VSNELSRTYAHKIRAVIDLLVVGGETIRKDRPILDARL 225


>gi|296114200|ref|ZP_06832855.1| riboflavin biosynthesis protein RibD [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295979276|gb|EFG85999.1| riboflavin biosynthesis protein RibD [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 357

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 102/219 (46%), Gaps = 21/219 (9%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQAL---EEAG 64
           R   AA+  +  HVG T+ NP V C I+   G ++  G     G PHAE +A+    E G
Sbjct: 21  RAFRAAVADAVRHVGATAPNPPVGCAILDAAGTILCTGAHHRAGTPHAEARAIALCRERG 80

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
              R  T  VTLEPC+H GR+ PC+Q I+   IR V +   DP+  V+G G  +L   G 
Sbjct: 81  LIERAHTIVVTLEPCNHTGRTGPCSQAIMHTPIRTVWIGATDPNPNVAGGGADFLRDHGC 140

Query: 125 IVDRMMESEGK-------------IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS 171
            V R++   G              I   A+L R    R+ +T+K AV     +     G 
Sbjct: 141 DV-RLLSDMGTYDAAELARLCRGLITPFAHLART--GRAWVTVKQAVDATGSM-RPPAGR 196

Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
              T   + +  H LR  +DA++   GT+ AD P L  R
Sbjct: 197 TTFTSATALDLAHRLRRATDAVVTATGTITADRPGLDVR 235


>gi|330991420|ref|ZP_08315371.1| Riboflavin biosynthesis protein ribD [Gluconacetobacter sp. SXCC-1]
 gi|329761439|gb|EGG77932.1| Riboflavin biosynthesis protein ribD [Gluconacetobacter sp. SXCC-1]
          Length = 339

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 134/304 (44%), Gaps = 37/304 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           A    AA+  +  HVG+T+ NP V C L+ +DG ++  G     G PHAE+QA+ +    
Sbjct: 11  AHGFRAAVDEAARHVGVTAPNPPVGCALLDRDGTILAVGGHHRAGTPHAEIQAINQCRAR 70

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G   R  TA VTLEPC+H GR+ PC+  +    +R V + + DP+  V+G G  +L  +G
Sbjct: 71  GLLDRAHTAVVTLEPCNHTGRTGPCSHALAATPVRDVWIGLRDPNPHVAGGGAGYLRSQG 130

Query: 124 IIVDRMMESEG---------KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
             V  +++  G         +  L  +       +  IT+K AV     + +   G    
Sbjct: 131 RSV-HVLQPTGPQAAPRDLCRSLLAPFAHFARTGQPWITVKQAVDATGSM-LPPPGRTTF 188

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           T   S +  H LR  +DA++    T+ AD P L  R          R+          D 
Sbjct: 189 TAATSLDLAHRLRRATDAVITTGRTIRADRPGLDVR----------RVP---------DH 229

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
                 +LA      E DD  L  A R +  ++  C   D+  L  +L   GVT  +VE 
Sbjct: 230 TGRAPRVLAICTRTGEVDDAYLTAA-RNRGFDVRLCT--DIAALPDLLGRAGVTWAMVEA 286

Query: 295 GAAV 298
           G A+
Sbjct: 287 GPAL 290


>gi|205355636|ref|ZP_03222406.1| putative riboflavin specific deaminase [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205346413|gb|EDZ33046.1| putative riboflavin specific deaminase [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 326

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 154/368 (41%), Gaps = 79/368 (21%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +M+ AL  +  +  LT  NP+V C+I+ K+  ++        G  HAE+ A+  A +  R
Sbjct: 5   YMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKSLR 64

Query: 69  -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                     + A+VTLEPCSH G++PPCA+   E G +++ + 
Sbjct: 65  PEISLPKEVNALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIFIS 124

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           V D +   SG G ++L ++GI V+  +++ EGK  L  +L  Q  K      K+A+S + 
Sbjct: 125 VKDENKIASG-GAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQ--KGQFKLFKLALSMNG 181

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222
               +  G + ++  +S+   H +RA  D ++VG  T+  D P L  RL   +  +P   
Sbjct: 182 ----SPFGKI-VSNKLSRTYAHKIRAVIDLLVVGGETIRKDRPILDTRL--CKAKAPNLC 234

Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282
           IL      + D  I                 P+  +  R+     IY       K L   
Sbjct: 235 ILSRQNIDNFDKNI-----------------PLFKVPNRQ-----IYTQIPSEAKFLMYE 272

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
            G     +  +G             +D  ++++S  +  E  +  PL       NF  + 
Sbjct: 273 GGENFLKIFKDG-------------IDMFLIFQSSSLNDEKNVTIPL-------NFKPLY 312

Query: 343 RDYFGSDV 350
           R++ GSD 
Sbjct: 313 RNFLGSDT 320


>gi|50426769|ref|XP_461982.1| DEHA2G10010p [Debaryomyces hansenii CBS767]
 gi|54036250|sp|Q6BII9|RIB7_DEBHA RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|49657652|emb|CAG90452.1| DEHA2G10010p [Debaryomyces hansenii]
          Length = 247

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 107/216 (49%), Gaps = 37/216 (17%)

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
           FL  YL R    R  +TL  A S D+ I         I+   +K   H +R++ D I+VG
Sbjct: 13  FLEEYLPRPCSNRPFVTLTYAQSLDSRIAAKPGEQTKISHLETKTMTHYIRSKHDGIMVG 72

Query: 197 IGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKTAL-----LAPVIIVT 249
           IGTVLADDP+L CR      +  +P  IILDP  K +     +++       LAP I++ 
Sbjct: 73  IGTVLADDPKLNCRFEAEDGNISTPRPIILDPTGKWAYHKSQLRSVCDNNKGLAPFILID 132

Query: 250 E-----NDD--------------PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           E     N+D              P+L  A +  N NII      LKKL  +    G+ S+
Sbjct: 133 ETVTPRNEDVEVLDKQDGAFVRLPLLRNADKVGNWNII------LKKLFQL----GIKSI 182

Query: 291 LVEGGAAVAHS-FINSRLVDSIILYRSQIVIGEGGI 325
           +VEGGA++ +   + S+++DS+I+    + +G+ G+
Sbjct: 183 MVEGGASIINDLLVYSKIIDSLIITIGPVFLGKDGV 218


>gi|147921689|ref|YP_684491.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [uncultured
           methanogenic archaeon RC-I]
 gi|110619887|emb|CAJ35165.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine
           1-reductase (riboflavin-specific deaminase) [uncultured
           methanogenic archaeon RC-I]
          Length = 226

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 100/189 (52%), Gaps = 11/189 (5%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R +  +  A+S D  I       V I+G    ++V  LRA SDA++VGIGTVLADDP LT
Sbjct: 4   RPYTFINSAMSADGKISTKKRKQVKISGKTDFDRVDELRAGSDAVMVGIGTVLADDPSLT 63

Query: 209 C--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
                    R+   ++ +P R+++D   +    + I K      +++V++   P   +A 
Sbjct: 64  VKSEERRKRRVAEGKDENPARVVVDSQARTPPTADIFKKGTGKRIVVVSQA-APADRVAA 122

Query: 261 RKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
            K+   II C  D  DL+++   L  RG+  L++EGGA + ++ ++ RLVD I ++   +
Sbjct: 123 LKEKAEIIVCGKDEVDLEQMSVELKKRGINRLMIEGGATLNYAMVSRRLVDEISVFVGNL 182

Query: 319 VIGEGGIPS 327
           +IG    P+
Sbjct: 183 IIGGKDAPT 191


>gi|268678892|ref|YP_003303323.1| riboflavin biosynthesis protein RibD [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268616923|gb|ACZ11288.1| riboflavin biosynthesis protein RibD [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 338

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 108/238 (45%), Gaps = 36/238 (15%)

Query: 3   VSSFDARFMSAALRFSRWHVG-LTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQAL 60
           V++ D   M  AL  + WH   LT  NP+V  ++  D G ++G G     G PHAEV AL
Sbjct: 2   VNALDNALMQKALD-AAWHYQVLTFPNPAVGAVVSNDAGEILGMGAHRKAGTPHAEVLAL 60

Query: 61  EEA----GEEAR-----------------------GATAYVTLEPCSHYGRSPPCAQFII 93
           +EA      + R                         + +VTLEPC H+G++PPC+  I 
Sbjct: 61  KEAYLTLTHDTRIEALSDSMALHLFLKENHQHLFSNLSLHVTLEPCHHFGKTPPCSSLIE 120

Query: 94  ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHIT 153
             GI+RVV+   D  +R  G G  +L  +G+ V      E    L    T + +K   I 
Sbjct: 121 ALGIKRVVIGSYDESLRAKGGG-AYLQSRGVDVSFGCLKEACDTLLTPFTCKEKKEPFIF 179

Query: 154 LKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
            K+A+S  N +   G     IT   S+  VH LR   D +++G  TV  D P L  RL
Sbjct: 180 YKLALSA-NSVATGGT----ITSLESRTMVHRLRDCCDLMVIGGNTVRVDRPTLDARL 232


>gi|58039442|ref|YP_191406.1| bifunctional riboflavin biosynthesis protein RibD [Gluconobacter
           oxydans 621H]
 gi|58001856|gb|AAW60750.1| Bifunctional riboflavin biosynthesis protein RibD [Gluconobacter
           oxydans 621H]
          Length = 349

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 138/307 (44%), Gaps = 44/307 (14%)

Query: 23  GLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAG-----EEARGATAYVTL 76
           G T+ NPSV C L+  +G ++  GV    G PHAE  AL +A      ++AR   A VTL
Sbjct: 32  GATAPNPSVGCTLLDAEGRILTVGVHPRVGQPHAEAMALAQARAAGVLDQAR--VALVTL 89

Query: 77  EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG-----RGLQWLSQKGIIVDRM-- 129
           EPC+H GR+PPC++ +    +R V +   DP+ + +G     R +       ++ DR   
Sbjct: 90  EPCNHTGRTPPCSEALRNSPVREVWIGAADPNPQAAGGAARLREMPAGKHVVMLADRPDM 149

Query: 130 --MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
             +    +  L  + +R V  R  I++K A+ ++  + +   G    T   S    H LR
Sbjct: 150 TDLARNCRALLAPFASRVVRHRPWISVKQALDENGSM-VPPPGQKTFTSPDSLTLAHRLR 208

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIIL--DPHFKLSLDSKIIKTALLAPV 245
             +DAI+ G+GTVLAD P  T R     E    R+++  D H +L  D           V
Sbjct: 209 RATDAIITGVGTVLADRPRFTVRHVADHEGRSPRLLVVCDRHGRLPADW----------V 258

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
             +TE    VL                 DL  +  +L  RGV   ++E G A+  S   +
Sbjct: 259 SEMTEAGFEVLT--------------SSDLLSVPAMLAERGVNWAMIEAGPALLASVAKA 304

Query: 306 RLVDSII 312
            L D  +
Sbjct: 305 GLWDDWL 311


>gi|302868567|ref|YP_003837204.1| riboflavin biosynthesis protein RibD [Micromonospora aurantiaca
           ATCC 27029]
 gi|302571426|gb|ADL47628.1| riboflavin biosynthesis protein RibD [Micromonospora aurantiaca
           ATCC 27029]
          Length = 295

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 88/165 (53%), Gaps = 4/165 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE 61
            S+ +   M  A+  S   +G TS NP V C+I+ + G  +G G     G  HAEV AL 
Sbjct: 2   ASNVELAAMRQAIILSSLGLGTTSPNPPVGCVILDRHGATVGAGYHRRKGEAHAEVNALS 61

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG  A G TA VTLEPC+H G +P C Q +I+ GI RVV+ + DP  R  G G   L+ 
Sbjct: 62  AAGPAALGGTAVVTLEPCNHVGVTPACRQELIDAGIARVVISLIDPTSRGEG-GAAVLTA 120

Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAV-SQDNMI 164
            GI V+  ++  E    L  +LT    +R ++T   A+  QD+ I
Sbjct: 121 HGIDVETNVLPDETLTVLGPWLTAIRRRRPYLTWAYALEGQDSQI 165


>gi|315927631|gb|EFV06962.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 336

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 156/368 (42%), Gaps = 79/368 (21%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +M+ AL  +  +  LT  NP+V C+I+ K+  ++        G  HAE+ A+  A +  R
Sbjct: 15  YMNLALNEAWKYQFLTYPNPAVGCIILDKNEKILAIKAHEKAGLAHAELNAIAHAFKSLR 74

Query: 69  -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                     + A+VTLEPCSH G++PPCA+   E G +++ + 
Sbjct: 75  PEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIFIS 134

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           V D +   SG G ++L ++GI V+  +++ EGK  L  +L  Q  K      K+A+S + 
Sbjct: 135 VKDENKIASG-GAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQ--KGQFKLFKLALSMNG 191

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222
               +  G + ++  +S+   H +RA  D ++VG  T+  D P L  RL   +  +P   
Sbjct: 192 ----SPFGKI-VSNELSRTYAHEIRAVIDLLVVGGETIRKDCPILDARL--CKAKAPNLC 244

Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282
           IL      + D  I                 P+  +  R+     IY       K     
Sbjct: 245 ILSRQNIDNFDKNI-----------------PLFKVPNRQ-----IYTQIPSEAKF---- 278

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
                  L+ EGG      F +   +D  ++++S  +  E  +  PL       NF  + 
Sbjct: 279 -------LMYEGGENFLKIFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKPLY 322

Query: 343 RDYFGSDV 350
           R++ GSD 
Sbjct: 323 RNFLGSDT 330


>gi|86149383|ref|ZP_01067614.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88596073|ref|ZP_01099310.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|85840165|gb|EAQ57423.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88190914|gb|EAQ94886.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni 84-25]
          Length = 326

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 156/368 (42%), Gaps = 79/368 (21%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +M+ AL  +  +  LT  NP+V C+I+ K+  ++        G  HAE+ A+  A +  R
Sbjct: 5   YMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKSLR 64

Query: 69  -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                     + A+VTLEPCSH G++PPCA+   E G +++ + 
Sbjct: 65  PEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIFIS 124

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           V D +   SG G ++L ++GI V+  +++ EGK  L  +L  Q  K      K+A+S + 
Sbjct: 125 VKDENKIASG-GAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQ--KGQFKLFKLALSMNG 181

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222
               +  G + ++  +S+   H +RA  D ++VG  T+  D P L  RL   +  +P   
Sbjct: 182 ----SPFGKI-VSNELSRTYAHEIRAVIDLLVVGGETIRKDCPILDARL--CKAKAPNLC 234

Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282
           IL      + D  I                 P+  +  R+     IY       K     
Sbjct: 235 ILSRQNIDNFDKNI-----------------PLFKVPNRQ-----IYTQIPSEAKF---- 268

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
                  L+ EGG      F +   +D  ++++S  +  E  +  PL       NF  + 
Sbjct: 269 -------LMYEGGENFLKIFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKPLY 312

Query: 343 RDYFGSDV 350
           R++ GSD 
Sbjct: 313 RNFLGSDT 320


>gi|218563211|ref|YP_002344991.1| riboflavin-specific deaminase/reductase [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|112360918|emb|CAL35719.1| riboflavin-specific deaminase/reductase [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|284926817|gb|ADC29169.1| riboflavin-specific deaminase/reductase [Campylobacter jejuni
           subsp. jejuni IA3902]
          Length = 336

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 156/368 (42%), Gaps = 79/368 (21%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +M+ AL  +  +  LT  NP+V C+I+ K+  ++        G  HAE+ A+  A +  R
Sbjct: 15  YMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKSLR 74

Query: 69  -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                     + A+VTLEPCSH G++PPCA+   E G +++ + 
Sbjct: 75  PEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIFIS 134

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           V D +   SG G ++L ++GI V+  +++ EGK  L  +L  Q  K      K+A+S + 
Sbjct: 135 VKDENKIASG-GAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQ--KGQFKLFKLALSMNG 191

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222
               +  G + ++  +S+   H +RA  D ++VG  T+  D P L  RL   +  +P   
Sbjct: 192 ----SPFGKI-VSNELSRTYAHEIRAVIDLLVVGGETIRKDCPILDARL--CKAKAPNLC 244

Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282
           IL      + D  I                 P+  +  R+     IY       K     
Sbjct: 245 ILSRQNIDNFDKNI-----------------PLFKVPNRQ-----IYTQIPSEAKF---- 278

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
                  L+ EGG      F +   +D  ++++S  +  E  +  PL       NF  + 
Sbjct: 279 -------LMYEGGENFLKIFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKPLY 322

Query: 343 RDYFGSDV 350
           R++ GSD 
Sbjct: 323 RNFLGSDT 330


>gi|289705541|ref|ZP_06501933.1| riboflavin biosynthesis protein RibD [Micrococcus luteus SK58]
 gi|289557770|gb|EFD51069.1| riboflavin biosynthesis protein RibD [Micrococcus luteus SK58]
          Length = 377

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 145/327 (44%), Gaps = 42/327 (12%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE--------- 62
           AALR      G+   NP V  ++  + G V+  G     G  HAEV AL           
Sbjct: 18  AALR------GVRGANPLVGAVLTDEAGRVLAVGHHRGRGTAHAEVDALTRWRAARAADP 71

Query: 63  --AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             A  +  G T +VTLEPC H G + PC+Q +++ GI  +   V DP     G G   L+
Sbjct: 72  ALAALDPAGLTLHVTLEPCDHTGSTGPCSQAVLDAGIGALRYAVADPTGH-DGGGAARLA 130

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEK--RSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
             G+ V         + L A   R+V    R  +T  +A S D     A   S  ITG  
Sbjct: 131 AHGVRVTGPTGEAAALALSARW-REVRDAGRPWVTGHLAQSLDGHAAAADGTSRWITGPD 189

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSKI 236
           S+   H +R++ DAI+VG GTVLADDP LT R     E  H P+ ++     +   D   
Sbjct: 190 SRLHAHEVRSRVDAIVVGTGTVLADDPRLTARDAAGAELAHQPVPVVQG--HRPVPDGVA 247

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
           ++     PV++   + DP   LA    +                   GR    +L+EGG 
Sbjct: 248 LRR---HPVVLEVPDHDPHAVLAALAAHPGPWPH-------------GRRAEHVLIEGGP 291

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            V  +++ + LVD +++Y + +++G G
Sbjct: 292 RVLGAWLRAGLVDELMVYTAPLLLGPG 318


>gi|57505260|ref|ZP_00371189.1| riboflavin biosynthesis protein (ribG) [Campylobacter upsaliensis
           RM3195]
 gi|57016396|gb|EAL53181.1| riboflavin biosynthesis protein (ribG) [Campylobacter upsaliensis
           RM3195]
          Length = 327

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 114/231 (49%), Gaps = 35/231 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA----- 63
           +M+ AL+ +  +  LT  NP+V C+I+ K+  ++        G  HAE+ A++EA     
Sbjct: 5   YMNLALKEAWKYQFLTYPNPAVGCVILDKNNQILSIKAHEKQGEAHAELNAIKEALKVLK 64

Query: 64  --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                +  + ATA+VTLEPC H G++PPCA+       ++V V 
Sbjct: 65  PEFNFPKEPNVLHEFILTNHQKLLQNATAFVTLEPCVHQGKTPPCAKLFSTLEFKKVFVS 124

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           V D +   SG G ++L QKGI+V+  ++E EG+  L  +L  Q    +    K+A+S   
Sbjct: 125 VKDENQIASG-GAEFLRQKGILVEMGILEKEGRELLKPFLKWQ--NGTFKLFKLALS--- 178

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213
            +  +  G   ++   S+   H +R+  D ++VG GT+  D P L  RL G
Sbjct: 179 -LNGSALGKF-VSNETSRIYAHQIRSIIDLLVVGGGTLRKDRPILDSRLCG 227


>gi|310792224|gb|EFQ27751.1| riboflavin-specific deaminase domain-containing protein [Glomerella
           graminicola M1.001]
          Length = 269

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 108/208 (51%), Gaps = 26/208 (12%)

Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199
           A  + + + R  +TL  A S D+ + +A      ++G  SK   H LR Q DAILVG+GT
Sbjct: 24  AIQSAETQSRPFVTLTFATSLDSSLSLAPGVRTRLSGPESKAMTHHLRRQHDAILVGVGT 83

Query: 200 VLADDPELTCRLNGLQ-EHSPMRIILDP--HFKLSLDSKIIKTAL----LAPVIIVTEND 252
           VLADDP L CR+ G   +  P  I++DP   +  +  +K+ + A     LAP +++    
Sbjct: 84  VLADDPGLNCRIAGAGLDAQPRPIVVDPRGRWDFTEHNKVFEVARAGKGLAPFVLIGST- 142

Query: 253 DPVLALAFRKKNI------NIIYCDCR------DLKKLLTILVGRGVTSLLVEGGAAVAH 300
               A+  +KK+I        +  D +      D + +L++L   G+ S++VEGG  V +
Sbjct: 143 ---AAVHSKKKSILEAHGGKFVVLDAKETEPRFDWQSILSVLHSEGLHSVMVEGGGQVIN 199

Query: 301 SFIN---SRLVDSIILYRSQIVIGEGGI 325
           S +N    + VD++I+  +   +G GG+
Sbjct: 200 SLLNPDSQQFVDTVIVTVAPTWLGRGGV 227


>gi|308806057|ref|XP_003080340.1| putative riboflavin biosynthesis protein ribD (ISS) [Ostreococcus
           tauri]
 gi|116058800|emb|CAL54507.1| putative riboflavin biosynthesis protein ribD (ISS) [Ostreococcus
           tauri]
          Length = 655

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 158/358 (44%), Gaps = 26/358 (7%)

Query: 23  GLTSTNPSVACLIVK-DGIV-IGRGVTAYGGCPHAE---VQALEEAGEEARGATAYVTLE 77
           G ++ +P  AC I   +G   + RG    G    AE   V+AL   G   RG TA V LE
Sbjct: 76  GASAPHPLSACAITDANGTTRVARGHEGQGAT-RAEIACVEALVRDGVGVRGGTACVNLE 134

Query: 78  PC-SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD----RMMES 132
           P            + ++  G+RRVVV +  P   + GR ++ + ++GI+VD    R    
Sbjct: 135 PVHGEVAGETRAVEALVTAGVRRVVVGMLHPLPGLRGRAVKAMRERGIVVDVLDARASGL 194

Query: 133 EGKIFL------HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
           EG++         A L R      +   K A++ D  I      S  +TG  ++ +V   
Sbjct: 195 EGEVAARCRETNEALLYRVATGLPYSVYKYAMTLDGKIATDNGHSSWVTGAEARERVFRE 254

Query: 187 RAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           R ++D I+VG  TV  D+P LTCR   G Q   P RI+L     L  D+++ +   +AP 
Sbjct: 255 RKRADCIVVGGATVRKDNPRLTCREETGFQ---PARIVLSRTLNLPEDAELWRVRDVAPT 311

Query: 246 II-VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           I+  T+   P      R K + ++  +     +    +  RG      E G  +A   + 
Sbjct: 312 IVCTTKGARPEFQKMLRSKGVEVVEFNELTPLEAAKYMHARGFLRCFWECGGGLAAPAMK 371

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362
           S +   ++ + +  +IG    P+PL  G L   F  +      + V LE +G+++ ++
Sbjct: 372 SGVFHHVMAFVAPKLIGGNSAPTPL--GDL--GFEAMHDALPLAGVTLETVGRDILVR 425


>gi|20093538|ref|NP_613385.1| pyrimidine reductase [Methanopyrus kandleri AV19]
 gi|19886379|gb|AAM01315.1| Pyrimidine reductase [Methanopyrus kandleri AV19]
          Length = 235

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 106/215 (49%), Gaps = 12/215 (5%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R  +   + ++ D  + +   G   I+G     +VH LRA+ DA+ VGI TV  DDP L 
Sbjct: 3   RPKVLYNVGMTADGKV-VTAAGDSRISGEEDLKEVHRLRAEHDAVAVGINTVRKDDPMLN 61

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
            RL  ++   P+R++ D    + LD ++++TA   P +++    DP       K+ + + 
Sbjct: 62  VRL--VEGEDPIRVVFDTECSIPLDCRLVRTARDIPTVVLCAEADPGRVEKLEKRGVKVE 119

Query: 269 YC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
                 D  D+++ L +L   GV +LL+EGG  +A SF+   L+D   +  + +++G   
Sbjct: 120 EVGACEDGVDVERGLELLYDMGVRTLLLEGGPTLAWSFLKRGLIDEFRVAVAPVLVGGSD 179

Query: 325 IPSPLE-EGY----LEKNFMCVRRDYFGSDVCLEY 354
             +P+E EG+    L       R +  G DV L Y
Sbjct: 180 ALTPVEGEGFPRVDLGVGLELKRVERVGRDVVLWY 214


>gi|83858225|ref|ZP_00951747.1| riboflavin biosynthesis protein RibD [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853048|gb|EAP90900.1| riboflavin biosynthesis protein RibD [Oceanicaulis alexandrii
           HTCC2633]
          Length = 210

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 102/214 (47%), Gaps = 18/214 (8%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
            +TLK+A S D  I +A   S  ITG  ++ +VH +RA  DAIL GIGTVLADDP++T R
Sbjct: 2   QVTLKLATSLDGRIALANGQSQWITGPEARAEVHRMRASHDAILTGIGTVLADDPQMTAR 61

Query: 211 LNG-LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
            +G L    P RI+LD   +L   ++I+      PV +               +N+ +  
Sbjct: 62  PDGALANRQPQRIVLDSQLRLPAYAEILTG---EPVWVFHTG-----GARSDLENVELFE 113

Query: 270 CDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            +  D        ++  L  RGV S+++E G  +A + I S  V  I  +R+  +IG  G
Sbjct: 114 TEADDGGRVSFSAVMQSLAARGVGSVMIEAGREIAGAAIRSDCVTRIEWFRAPRLIGAEG 173

Query: 325 IPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
                   LEE  L   F  +     G+D+   Y
Sbjct: 174 RACIAGLGLEELSLAPTFKRMEVRACGADLWETY 207


>gi|118474836|ref|YP_892622.1| riboflavin biosynthesis protein RibD [Campylobacter fetus subsp.
           fetus 82-40]
 gi|118414062|gb|ABK82482.1| riboflavin biosynthesis protein RibD [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 336

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 125/284 (44%), Gaps = 46/284 (16%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +M+ A+  +     LT  NP+V C+I  K+G ++        G PHAE+ A++ A E   
Sbjct: 6   YMNIAINKAWEFQFLTYPNPAVGCVITGKNGEILSINAHEKAGMPHAELNAIKYALEMKN 65

Query: 69  -----------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                                        G+TAYVTLEPCSH GR+PPCA  + E G ++
Sbjct: 66  PAFKQDFDEIKDTNELYNFIMQNHSNLLNGSTAYVTLEPCSHQGRTPPCANLLKELGFKQ 125

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAV 158
           V++   D      G G Q L   GI     + + +    L  +L   +   S    KIA+
Sbjct: 126 VIIGAIDSSENAKG-GEQILKNSGIKTKIGVCKEKADELLEPFLAWSLGNFSF--FKIAL 182

Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQE 216
           +Q+   G+A  G   I+   S+   H LR+  D +++G  TV  D P L  RL  NG   
Sbjct: 183 TQN---GIASGGV--ISNLQSRTHSHKLRSLVDMLVIGGNTVRTDRPLLDTRLVKNG--- 234

Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
            +P  ++     K   D+ I    +L   +IV+ + D V    F
Sbjct: 235 KNPDILLYSKESK--FDTTIPLFNILDRRVIVSNSLDAVFERKF 276


>gi|294496137|ref|YP_003542630.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Methanohalophilus mahii DSM 5219]
 gi|292667136|gb|ADE36985.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Methanohalophilus mahii DSM 5219]
          Length = 226

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 106/196 (54%), Gaps = 12/196 (6%)

Query: 154 LKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN- 212
           +  A+S D  I       V I+G +   ++  LRA SDA++VGIGTVLADDP LT + + 
Sbjct: 8   INAAMSIDGKISTRQRRQVRISGDVDFERMDELRASSDAVMVGIGTVLADDPSLTVKSDE 67

Query: 213 --------GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
                   GL E+ P+RI++D   ++  ++ I +      +I V+E+       + RKK 
Sbjct: 68  RRAKRLAKGLDEN-PVRIVVDSKARIPTNADIFRKGAGKIIIAVSESAAFDRVESLRKKA 126

Query: 265 INIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           + I+    + DL +LL+IL   G+  L+VEGGA +    + + LVD I  +   ++IG G
Sbjct: 127 MVIMAGGNQVDLPELLSILDEMGIHRLMVEGGAGLNWGLVKNGLVDEIYSFIGNLIIGGG 186

Query: 324 GIPSPLE-EGYLEKNF 338
             P+ ++ EG+ E N 
Sbjct: 187 TAPTLIDGEGFDEANM 202


>gi|126275980|ref|XP_001387170.1| predicted protein [Scheffersomyces stipitis CBS 6054]
 gi|126213039|gb|EAZ63147.1| predicted protein [Pichia stipitis CBS 6054]
          Length = 265

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 106/221 (47%), Gaps = 22/221 (9%)

Query: 137 FLHAYLTR---QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAI 193
           FL  YL     Q +KR  +TL  A S D+ I         I+   +K   H LR++ DAI
Sbjct: 26  FLEPYLPTPKIQHQKRPFVTLTYAQSLDSRIAAKKGTQTKISHLETKTMTHYLRSKHDAI 85

Query: 194 LVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTAL-----LAPVII 247
           +V IGTV ADDP+L CR      +HSP  +ILDPH K +     ++         AP II
Sbjct: 86  MVAIGTVQADDPKLNCRYREDGNDHSPRPVILDPHGKWNYSESQLRAICDNKQGKAPYII 145

Query: 248 VTENDDPVLA--LAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
           + EN  P        +++N   IY         +   +L  L   GV S+++EGGA V +
Sbjct: 146 IEENVKPKQEDIEILQEQNGLFIYLPLSTDHSANWDLILQKLHDLGVESIMIEGGAMVIN 205

Query: 301 SFIN-----SRLVDSIILYRSQIVIGEGGIP-SPLEEGYLE 335
             ++       L+DS+I+    I +G  G+  SP ++  LE
Sbjct: 206 ELLDFHRTQHDLIDSLIITVGPIFLGSQGVEVSPRKQVNLE 246


>gi|261886453|ref|ZP_06010492.1| riboflavin biosynthesis protein RibD [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 330

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 99/219 (45%), Gaps = 39/219 (17%)

Query: 24  LTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR-------------- 68
           LT  NP+V C+I  K+G ++        G PHAE+ A++ A E                 
Sbjct: 14  LTYPNPAVGCVITGKNGEILSINAHEKAGMPHAELNAIKYALEMKNPAFKQDFDEIKDTN 73

Query: 69  ---------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                          G+TAYVTLEPCSH GR+PPCA  + E G ++V++   D      G
Sbjct: 74  ELYNFIMQNHSNLLNGSTAYVTLEPCSHQGRTPPCANLLKELGFKQVIIGAIDSSENAKG 133

Query: 114 RGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172
            G Q L   GI     + + +    L  +L   +   S    KIA++Q+   G+A  G  
Sbjct: 134 -GEQILKNSGIKTKIGVCKEKADELLEPFLAWSLGNFSF--FKIALTQN---GIASGGV- 186

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
            I+   S+   H LR+  D +++G  TV  D P L  RL
Sbjct: 187 -ISNLQSRTHSHKLRSLVDMLVIGGNTVRTDRPLLDTRL 224


>gi|315636537|ref|ZP_07891773.1| riboflavin biosynthesis protein RibD [Arcobacter butzleri JV22]
 gi|315479186|gb|EFU69883.1| riboflavin biosynthesis protein RibD [Arcobacter butzleri JV22]
          Length = 334

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 111/236 (47%), Gaps = 45/236 (19%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  +  H  LT  NP+V C+IVK+  ++        G PHAEV AL+ A  +
Sbjct: 5   DNFYMRLAIDEAWKHQLLTYPNPAVGCVIVKNQRLLAVEAHKEAGMPHAEVNALKTAYLK 64

Query: 67  ARGATA---------------------------YVTLEPCSHYGRSPPCAQFIIECGIRR 99
               +                            YVTLEPC+H G++P CA  + E   +R
Sbjct: 65  DNPNSILKTKNSSFDIHQFLLHNHNGFFNDCEIYVTLEPCNHIGKTPSCANLLKELKPKR 124

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAV 158
           V++ V DP+ + +G GL+ L  + I V   ++E +G   +  +++ Q   +S I  K+A 
Sbjct: 125 VIISVKDPNKQATG-GLETLKNENIDVTLGILEKDGLNLILPFISWQ--NKSCIFFKMAQ 181

Query: 159 SQDNMIGMAGCGSVPITGFISKNQ----VHLLRAQSDAILVGIGTVLADDPELTCR 210
           + +        GS  I G IS N+    VH LR + D +++G  +V  D P L  R
Sbjct: 182 TLN--------GS--IDGKISSNRALAYVHTLRDKIDLLVIGGNSVRIDKPTLDTR 227


>gi|219851937|ref|YP_002466369.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanosphaerula
           palustris E1-9c]
 gi|219546196|gb|ACL16646.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanosphaerula palustris E1-9c]
          Length = 231

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 106/213 (49%), Gaps = 16/213 (7%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R ++ + +A+S D  +       V I+G I   +V  ++A SDAI+VGIGTVLADDP LT
Sbjct: 2   RPYVFVNVAMSADGKLSTRERRQVKISGSIDFRRVDQIKAGSDAIMVGIGTVLADDPSLT 61

Query: 209 CRLNGL--------QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT-ENDDPVLALA 259
            +   L        ++ +P+R+++D   +  +++ I+       ++ V  E D+    L 
Sbjct: 62  VKDPELKAGRAARGEDENPIRVVVDSRGRTPIEAAILNKGSGQRIVAVAGEADEKNRELL 121

Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
             K ++     +  DL  LL  L  RGV  L+VEGG  +  S I   LVD I  +   +V
Sbjct: 122 REKADVITTGTESVDLPALLDALHARGVRRLMVEGGGTLIWSLIKEDLVDEIQTFIGNMV 181

Query: 320 IGEGGIPSPLE-EGYLEKNFMCVRRDYFGSDVC 351
           IG    P+  + EG+L        +D+ G D+ 
Sbjct: 182 IGGKDAPTLADGEGFL------AAQDFVGLDLA 208


>gi|254442809|ref|ZP_05056285.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198257117|gb|EDY81425.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 151

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/122 (45%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 7   DARFMSAAL-RFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D  FM AA+    R     TS NP V  +IV+DG ++ +G     G PHAE QALE  G 
Sbjct: 7   DESFMRAAVCEAVRGDAVKTSPNPRVGAVIVEDGEIVAKGHFERDGGPHAERQALEALGR 66

Query: 66  EAR-GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           + + GA  YVTLEPCS  GR+  C   I+E GIRRVVV   DP     G G++ L   G+
Sbjct: 67  KPKEGAVIYVTLEPCSTQGRTGACTDAILEAGIRRVVVGASDPTEEHRGNGVRVLEAAGV 126

Query: 125 IV 126
            V
Sbjct: 127 EV 128


>gi|307111161|gb|EFN59396.1| hypothetical protein CHLNCDRAFT_137887 [Chlorella variabilis]
          Length = 181

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/125 (46%), Positives = 76/125 (60%), Gaps = 1/125 (0%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE 61
           V+  D   M  AL  +   +G T  NP+V C+IV   G V+G G     G PHAEV AL 
Sbjct: 27  VTEADRLHMRRALELAARGLGATYPNPAVGCVIVDASGRVLGEGFHPRAGMPHAEVYALR 86

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG  A GATAYVTLEPC+H+GR+PPC++ ++  G+ RVVV   DP+  V G G++ L  
Sbjct: 87  AAGRAAAGATAYVTLEPCNHFGRTPPCSRALVAAGVSRVVVGCTDPNPLVGGCGVKTLRD 146

Query: 122 KGIIV 126
            GI+ 
Sbjct: 147 AGIVA 151


>gi|124485759|ref|YP_001030375.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Methanocorpusculum labreanum Z]
 gi|124363300|gb|ABN07108.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Methanocorpusculum labreanum Z]
          Length = 225

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 94/189 (49%), Gaps = 11/189 (5%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R ++ +  A+S D  +         I+G     +V  LRA SDAI+VGIGTVL+DDP L 
Sbjct: 2   RPYVIINAAMSADGKLATRERKQTKISGHDDFLRVDRLRADSDAIMVGIGTVLSDDPSLR 61

Query: 209 C---------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
                     + NG   H PMR+++D   K+  D  + K  L   VI V+E        A
Sbjct: 62  LKSEEHAGMRKANGKDPH-PMRVVIDSTAKMPADGDMFKKGLGRVVIFVSEKAQKEKCDA 120

Query: 260 FRKKNINIIYC-DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
            R+K   I    D  DL+ +L  L   GV  L+VEGG+ +  SF++S L D I +Y   +
Sbjct: 121 LREKATVISAGRDSVDLEIVLDELSKLGVEKLMVEGGSTLLWSFMSSGLFDEIRIYIGAL 180

Query: 319 VIGEGGIPS 327
           +IG    P+
Sbjct: 181 IIGGKDAPT 189


>gi|163845756|ref|YP_001633800.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222523464|ref|YP_002567934.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chloroflexus sp.
           Y-400-fl]
 gi|163667045|gb|ABY33411.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222447343|gb|ACM51609.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chloroflexus sp.
           Y-400-fl]
          Length = 221

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 107/222 (48%), Gaps = 27/222 (12%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R  +TL  A + D  +      S  I+G  S    H LRA SDAI+VG+GTVL DDP LT
Sbjct: 3   RPRVTLCFAQTLDGRVAAVDGSSQWISGPESLRFCHHLRANSDAIMVGVGTVLRDDPRLT 62

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
            RL  +    P+R+I+D H +    + +I+       ++      P+      ++ I + 
Sbjct: 63  TRL--VAGPDPLRVIVDTHLRTPTTAAVIRDGAGTGTLLACTAAAPL------ERRIALQ 114

Query: 269 YCDCR------------DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
            C               DL  LLT L  RGV S++VEGGA +  S + + LVD++ +  +
Sbjct: 115 ECGATVLTMPEAAGGGVDLAALLTALGERGVASVMVEGGARLITSLLRANLVDALAVTIA 174

Query: 317 QIVIGEGGIPSPLEE-GYLEKN----FMCVRRDYFGSDVCLE 353
            I++G G  PS + + G L  N       V    +G+DV +E
Sbjct: 175 PIILGSG--PSAIGDLGILTLNQALRLTNVTWTTYGADVVIE 214


>gi|91774264|ref|YP_566956.1| hypothetical protein Mbur_2352 [Methanococcoides burtonii DSM 6242]
 gi|91713279|gb|ABE53206.1| 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate
           reductase [Methanococcoides burtonii DSM 6242]
          Length = 226

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 10/193 (5%)

Query: 157 AVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT-------- 208
           A+S D  I       V I+G I  +++  LRA SDAI+VGIGTVLADDP LT        
Sbjct: 11  AMSADGKISTKERKQVRISGDIDFDRMDELRASSDAIMVGIGTVLADDPSLTVKSRYRRD 70

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
            R N   +  P+RII+D   +  L++ I K      ++ V+ +       A  KK   I 
Sbjct: 71  TRKNKGLDEDPVRIIVDSKARTPLNADIFKKGTGMRIVAVSSSAPKEKVDALSKKATIIT 130

Query: 269 YCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
             D + DL  L+  L   G+  L+VEGGA +    +++ LVD +  +   I IG    P+
Sbjct: 131 AGDEKVDLVLLMGQLSSMGIQRLMVEGGATLNWGLLSNGLVDEVFSFIGNIFIGGNSSPT 190

Query: 328 PLE-EGYLEKNFM 339
            ++ EG+L+ +F+
Sbjct: 191 LVDGEGFLKGDFL 203


>gi|302545542|ref|ZP_07297884.1| riboflavin biosynthesis, RibD domain-containing protein
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302463160|gb|EFL26253.1| riboflavin biosynthesis, RibD domain-containing protein
           [Streptomyces himastatinicus ATCC 53653]
          Length = 238

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 97/199 (48%), Gaps = 14/199 (7%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
           E R ++  K A + D  I  A   S  IT   S+ +VH LRA   A +VG GT  AD+P 
Sbjct: 16  EGRPYVVYKYAATLDGRIAAADSTSQWITSAESRTEVHALRAACQATVVGSGTQQADNPH 75

Query: 207 LTCRLNGLQ---------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
           L  R              +  P R+I+D + +   D++++  A  AP +I   +D     
Sbjct: 76  LAVRSAKDDPKLKVAVPVDEQPWRVIVDSNARTPADARVLDDA--APTLIAVADDVDATH 133

Query: 258 LAFRKKNINIIYC-DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
           L      + +    +  DL KLL  L GRGV  + +EGG  +A SF++S LVD II Y +
Sbjct: 134 LEGIATVVRLPRAKEGLDLGKLLGELDGRGVRGMFLEGGPTLAASFVSSGLVDRIIAYIA 193

Query: 317 QIVIGEGGIPSPLEEGYLE 335
             V+G G   S L+ G +E
Sbjct: 194 PAVLGRG--KSALQGGTIE 210


>gi|159478382|ref|XP_001697283.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Chlamydomonas reinhardtii]
 gi|158274757|gb|EDP00538.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Chlamydomonas reinhardtii]
          Length = 684

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 149/344 (43%), Gaps = 19/344 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVAC-LIVKDG-IVIGRGVTAYGGCPHAEVQALEEAG 64
           D   + AA R +    G T  +P+ AC L+  DG  VI +      G   AEV A+  AG
Sbjct: 46  DYAHLEAAARLAGSPEGETQPHPNAACRLVGPDGRTVISQAFLRAQGTTSAEVLAVSAAG 105

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
             ARG TAY+ LEP   +G      + ++  G+ RVVV +  P   +  RG+  L   G+
Sbjct: 106 PAARGGTAYLNLEPGDCHGEGA-AVEALVRSGVSRVVVGLRHPLRHLRSRGIGLLRNAGL 164

Query: 125 IVDRMMESEGKIFL-----------HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP 173
            V  M                         R   +R    LK A++ D  I      S  
Sbjct: 165 RVGEMGGVLAGGLAGDPRPTPFPICFPRTCRAALRRPLGVLKYAMTLDGKIATNLGHSAW 224

Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233
           ++   S+  V   RA+SDA++VG  TV  D+P LT R  G   H+P RI++     L  D
Sbjct: 225 VSSAQSRALVFETRARSDAVIVGGNTVRRDNPRLTTRREG--GHTPARIVMSRTLDLPED 282

Query: 234 SKIIKTALLAPVIIVTENDDPV-LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
           + +     LAP I++T+         A R + + ++  D    + +      RG      
Sbjct: 283 ANLWDVT-LAPTIVLTQRGARTRFQSALRAQGVEVVEFDFLTPESVADYCQERGFLQCFW 341

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-GYLE 335
           E G  +A   I S +V  ++ + +  +IG    P+P+ E G++E
Sbjct: 342 ECGGTLAAPAIASGVVHKVMAFVAPKIIGGLRAPTPVGELGFVE 385


>gi|157738249|ref|YP_001490933.1| bifunctional riboflavin biosynthesis protein RibD [Arcobacter
           butzleri RM4018]
 gi|157700103|gb|ABV68263.1| bifunctional riboflavin biosynthesis protein RibD [Arcobacter
           butzleri RM4018]
          Length = 334

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 111/236 (47%), Gaps = 45/236 (19%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  +  H  LT  NP+V C+IVK+  ++        G PHAEV AL+ A  +
Sbjct: 5   DNFYMRLAIDEAWKHQLLTYPNPAVGCVIVKNQRLLAVEAHKEAGMPHAEVNALKTAYLK 64

Query: 67  ARGATA---------------------------YVTLEPCSHYGRSPPCAQFIIECGIRR 99
               +                            YVTLEPC+H G++P CA  + E   +R
Sbjct: 65  DNPNSILKTKNSSFDIHQFLLQNHNGFFNDCEIYVTLEPCNHIGKTPSCANLLKELKPKR 124

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAV 158
           V++ V DP+ + +G GL+ L  + I V   +++ +G   +  +++ Q   +S I  K+A 
Sbjct: 125 VIISVKDPNKQATG-GLETLRNENINVTLDILKKDGLNLILPFISWQ--NKSCIFFKMAQ 181

Query: 159 SQDNMIGMAGCGSVPITGFISKNQ----VHLLRAQSDAILVGIGTVLADDPELTCR 210
           + +        GS  I G IS N+    VH LR + D +++G  +V  D P L  R
Sbjct: 182 TLN--------GS--IDGKISSNRALAYVHTLRDKIDLLVIGGNSVRIDKPTLDTR 227


>gi|317053384|ref|YP_004119151.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pantoea sp.
           At-9b]
 gi|316953123|gb|ADU72595.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pantoea sp.
           At-9b]
          Length = 144

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 64/115 (55%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  AL +SR  +     NP V C+IV +G+V+ +G T   G  HAE+ A+         
Sbjct: 7   FMLLALEYSRLALPECRPNPPVGCVIVHNGVVVSKGFTQSPGHHHAEIDAISRLTFPMGE 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
              +VTLEPCS+ GR+P CA+ + E   R + + ++DP  R SG GL+ L   GI
Sbjct: 67  CDIFVTLEPCSYQGRTPSCARTLAEMKPRHIYIAIEDPHPRNSGEGLRILKNAGI 121


>gi|315928823|gb|EFV08089.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 335

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 155/368 (42%), Gaps = 80/368 (21%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +M+ AL  +  +  LT  NP+V C+I+ K+  ++        G  HAE+ A+  A +  R
Sbjct: 15  YMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKSLR 74

Query: 69  -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                     + A+VTLEPCSH G++PPCA+   E G +++ + 
Sbjct: 75  PEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIFIS 134

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           V D +   SG G ++L ++GI V+  +++ EGK  L      + +K      K+A+S + 
Sbjct: 135 VKDENKIASG-GAEFLKKQGIEVEFDILKEEGKKLLKPL---KWQKGQFKLFKLALSMNG 190

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222
               +  G + ++  +S+   H +RA  D ++VG  T+  D P L  RL   +  +P   
Sbjct: 191 ----SPFGKI-VSNELSRTYAHEIRAVIDLLVVGGETIRKDCPILDARL--CKAKAPNLC 243

Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282
           IL      + D  I                 P+  +  R+     IY       K     
Sbjct: 244 ILSRQNIDNFDKNI-----------------PLFKVPNRQ-----IYTQIPSEAKF---- 277

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
                  L+ EGG      F +   +D  ++++S  +  E  +  PL       NF  + 
Sbjct: 278 -------LMYEGGENFLKIFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKPLY 321

Query: 343 RDYFGSDV 350
           R++ GSD 
Sbjct: 322 RNFLGSDT 329


>gi|260551097|ref|ZP_05825301.1| pyrimidine deaminase [Acinetobacter sp. RUH2624]
 gi|260405864|gb|EEW99352.1| pyrimidine deaminase [Acinetobacter sp. RUH2624]
          Length = 286

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 121/237 (51%), Gaps = 21/237 (8%)

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLK 155
           +++VVV   DP+  V+G+G+Q L   GI V+  + E         +L        ++ LK
Sbjct: 22  LKKVVVACPDPNPLVAGKGVQILKNAGIEVEIGICEDLAAKLNQGFLKAMSTGMPYVRLK 81

Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGL 214
           +A S D    MA   S  ITG  ++  V   RA S A++ GI TV+ADD +L  R L+ L
Sbjct: 82  VASSLDGRTAMASGESKWITGSAARQDVQHWRAISGAVITGIDTVIADDCQLNVRSLHNL 141

Query: 215 QEHS---PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA-FRKK--NINII 268
              +   P R+ILD   +L L +KI+            EN + V+ +  +R++  ++ +I
Sbjct: 142 DIETVAQPKRVILDRRGRLPLTAKIL------------ENPETVMVMGPYRQELADLGVI 189

Query: 269 YCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
             + + LK LL  L  +  +  +LVE GA ++ +F+   LVD +I Y +  ++G+  
Sbjct: 190 QLEIQPLKTLLQALSKQYQIYDVLVEAGATLSTAFLQEGLVDEMISYVAPTLLGQSA 246


>gi|313681592|ref|YP_004059330.1| riboflavin biosynthesis protein ribd [Sulfuricurvum kujiense DSM
           16994]
 gi|313154452|gb|ADR33130.1| riboflavin biosynthesis protein RibD [Sulfuricurvum kujiense DSM
           16994]
          Length = 336

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 101/230 (43%), Gaps = 37/230 (16%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M+ AL  +  +  LT  NP+V  + + D G V+  G     G PHAEV AL +A     G
Sbjct: 10  MTLALNAAWEYQLLTFPNPAVGAVCLSDNGTVVSVGTHKRAGGPHAEVYALRDAYTLLSG 69

Query: 70  ATAY---------------------------VTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
            T                             VTLEPCSH G++P CA  I + GI+RV +
Sbjct: 70  DTTIAGCDDSHRIHDYLRTRHNGIFHTVSMAVTLEPCSHSGKTPSCALLIRDLGIKRVYI 129

Query: 103 CVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
            V DP+   +G G   LS  G   V  +ME EG+  L  ++  Q  K   +  K A   D
Sbjct: 130 SVKDPNPAAAG-GASLLSDAGAECVFGIMEEEGEKLLEPFIRWQ--KSPFVFFKWAQRLD 186

Query: 162 NMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
             I         I+   S+  +H LR + D I++G  TV  D P L  RL
Sbjct: 187 GTIDNG-----TISSQSSREHMHALRDRCDLIVIGGNTVRHDRPTLDARL 231


>gi|119179569|ref|XP_001241355.1| hypothetical protein CIMG_08518 [Coccidioides immitis RS]
          Length = 612

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 104/215 (48%), Gaps = 26/215 (12%)

Query: 137 FLHAYLTRQVEKRS--HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
           FL  YL  + E R   H+TL  A S D  I +A      ++G  SK   H LR++ DAIL
Sbjct: 337 FLQPYLPTREENRKFPHVTLTYAQSMDGKISLAPGVQTVLSGPESKLMTHYLRSRHDAIL 396

Query: 195 VGIGTVLADDPELTCRLN-------GLQEHSPMRIILDP--HFKLSLDSKIIKTALL--- 242
           +G+GT LAD+P L CRL          +   P  +I+DP   + ++ + +I+KTAL    
Sbjct: 397 IGVGTALADNPGLNCRLEGAGGYGGLGKMWQPRPVIVDPTGRWPINPECRILKTALAGKG 456

Query: 243 -APVIIVTE----NDDPVLALAFRKKN---INIIYCDCR-DLKKLLTILVGRGVTSLLVE 293
            AP ++V+     + D +L L     +   I+      R     +   L   G+ S++VE
Sbjct: 457 KAPWVVVSPCANISADRILLLKKHGGDFLRISEFNPSWRLQWSTIFGALAAEGINSIMVE 516

Query: 294 GGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI 325
           GG  V    +N      VDS+I+  +   +G GG+
Sbjct: 517 GGGVVLSELLNPEYEDFVDSVIVTVAPTYLGRGGV 551


>gi|58531995|emb|CAE04095.3| OSJNBa0096F01.4 [Oryza sativa Japonica Group]
          Length = 633

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 16/234 (6%)

Query: 57  VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           V AL +A + A  ATAYV+LEPC+HYGR+PPC + +I   ++ VVV + DP+  V+ +G+
Sbjct: 47  VFALRDARDLAENATAYVSLEPCNHYGRTPPCTEALINAKLKDVVVGMTDPNPIVASKGI 106

Query: 117 QWLSQKGIIVDRMMESEG--KIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVP 173
           + L   GI V   ME E   +    AY+   +  ++  TL+  +S +  ++   G G+  
Sbjct: 107 ERLQSAGIDVRVCMEEEALCRNLNEAYIHCMLTGKAFATLRTTLSVNGVVVNQIGTGADQ 166

Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233
             G+ S+    LL+     I+ GI   +   P  T    G ++  P+ II+       L+
Sbjct: 167 PGGYYSQ----LLKEYDGVIISGISVNMTTLP--TSHEAGAKQ--PLYIIIAQGGNSQLN 218

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
            + ++    +  +++T  D PV     +   + ++  D   L+ +L IL  RG+
Sbjct: 219 IQFLREECASEAVVLT--DSPV---TVKPPGVEVLVLDRMSLEFILEILAQRGL 267


>gi|55859444|emb|CAH17653.1| HTP reductase [Debaryomyces hansenii]
          Length = 262

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 106/218 (48%), Gaps = 37/218 (16%)

Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
           K FL  YL R    +  +TL  A S D+ I         I+   +K   H +R++ D I+
Sbjct: 26  KPFLEDYLPRPGSNKPFVTLTYAQSLDSRIAAKPGEQTKISHLETKTMTHYIRSKHDGIM 85

Query: 195 VGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKTAL-----LAPVII 247
           VGIGTVLADDP+L CR      H  +P  +ILDP  K   +   +++       LAP I+
Sbjct: 86  VGIGTVLADDPKLNCRFEADDGHISTPRPVILDPTGKWVYNKSQLRSVCDDNKGLAPFIL 145

Query: 248 VTE-----NDD--------------PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           + +     N+D              P+L+ + R  N  +I      L KL  +    G+ 
Sbjct: 146 IDDTVTPSNEDIEVIEKQGGAFVKLPLLSSSNRIDNWKVI------LAKLFEL----GIK 195

Query: 289 SLLVEGGAAVAHS-FINSRLVDSIILYRSQIVIGEGGI 325
           S+++EGGA++ +   I + +VDS+I+    + +G+ G+
Sbjct: 196 SIMIEGGASIINDLLIYNEVVDSLIITIGPVFLGKDGV 233


>gi|115446113|ref|NP_001046836.1| Os02g0473000 [Oryza sativa Japonica Group]
 gi|113536367|dbj|BAF08750.1| Os02g0473000 [Oryza sativa Japonica Group]
          Length = 490

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 133/291 (45%), Gaps = 18/291 (6%)

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES-EGKIFLHA 140
           YG S   +  +++ GI RVVV +  P   + G+ +Q L  +GI VD + E    K+F  A
Sbjct: 4   YGDSTAVST-LVQAGITRVVVGLRHPLKHLRGKAIQSLRNEGIQVDVVGEDLHSKLFKEA 62

Query: 141 Y----------LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
                      L R   +     LK A++ D  I  +   +  ++G  S+ +V  LR +S
Sbjct: 63  LKSCLIVNAPLLYRAAFRVPFSVLKYAMTADGKIAASSGHASWVSGKSSRGRVFELRGRS 122

Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
           DAI+VG  TV  DDP LT R   ++ H P+RI++     L  ++ +        ++    
Sbjct: 123 DAIIVGGNTVRLDDPRLTAR--HVKGHVPVRIVMSQSLNLPEEANLWNVHDAYTIVATQR 180

Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
                L      K + ++  D  + + +++    RG  S+L E G  +A S I++ ++  
Sbjct: 181 GARRDLQKKLALKGVEVVEFDMLNPRDVMSYCYDRGYLSVLWECGGTLAASAISASVIHK 240

Query: 311 IILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           +  + +  +IG    P+P+  G L  N M    D    DV  E I +++ +
Sbjct: 241 VYAFLAPKIIGGVNAPTPV--GELGMNQMTQAIDLI--DVSYEQIDRDMLM 287


>gi|301055608|ref|YP_003793819.1| riboflavin biosynthesis protein contains C-terminal domain of RibD
           [Bacillus anthracis CI]
 gi|300377777|gb|ADK06681.1| riboflavin biosynthesis protein contains C-terminal domain of RibD
           [Bacillus cereus biovar anthracis str. CI]
          Length = 216

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 3/156 (1%)

Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233
           ITG  ++  VH  R   DAILVG+ TV+AD+P LT R+    +H P+R+ILD H +    
Sbjct: 17  ITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVILDTHLRTPPS 75

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLL 291
           S +I   L    IIV  + +     ++  KNI I     +  +++ +L +L  + + SL 
Sbjct: 76  SHVITDGLAPTWIIVGTDVNQEKIASYESKNIAIFQMKTKQIEIQDVLHLLGEKQILSLF 135

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           VEGG  V  SF+ ++  + I+ Y S  +IG    P+
Sbjct: 136 VEGGQTVHASFLQTKYFNEIVTYISPKLIGGSKAPT 171


>gi|303320915|ref|XP_003070452.1| RibD C-terminal domain containing protein [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240110148|gb|EER28307.1| RibD C-terminal domain containing protein [Coccidioides posadasii
           C735 delta SOWgp]
 gi|320033048|gb|EFW14997.1| riboflavin-specific deaminase [Coccidioides posadasii str.
           Silveira]
          Length = 611

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 104/215 (48%), Gaps = 26/215 (12%)

Query: 137 FLHAYLTRQVEKRS--HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
           FL  YL  + E R   H+TL  A S D  I +A      ++G  SK   H LR++ DAIL
Sbjct: 337 FLQPYLPTREENRKFPHVTLTYAQSMDGKISLAPGVQTVLSGPESKLMTHYLRSRHDAIL 396

Query: 195 VGIGTVLADDPELTCRLN-------GLQEHSPMRIILDP--HFKLSLDSKIIKTALL--- 242
           +G+GT LAD+P L CRL          +   P  +I+DP   + ++ + +I+KTAL    
Sbjct: 397 IGVGTALADNPGLNCRLEGAGGYGGLGKMWQPRPVIVDPTGRWPINPECRILKTALAGKG 456

Query: 243 -APVIIVTE----NDDPVLALAFRKKN---INIIYCDCR-DLKKLLTILVGRGVTSLLVE 293
            AP ++V+     + D +L L     +   I+      R     +   L   G+ S++VE
Sbjct: 457 KAPWVVVSPCANISADRILLLKKHGGDFLRISEFNPSWRLQWSTIFGALAAEGINSIMVE 516

Query: 294 GGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI 325
           GG  V    +N      VDS+I+  +   +G GG+
Sbjct: 517 GGGVVLSELLNPEYEDFVDSVIVTVAPTYLGRGGV 551


>gi|298674087|ref|YP_003725837.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanohalobium evestigatum Z-7303]
 gi|298287075|gb|ADI73041.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanohalobium evestigatum Z-7303]
          Length = 234

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 97/190 (51%), Gaps = 13/190 (6%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R  I L  AVS D  I       V I+G     +V  L+ +SD ++VGIGTVLADDP LT
Sbjct: 11  RPFIFLNAAVSADGKISTKERKQVKISGDNDFERVDELKKESDGVMVGIGTVLADDPSLT 70

Query: 209 CRL---------NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
            +          NGL E+ P RI++D + +  +D+ I K      VI V++   P   + 
Sbjct: 71  IKSENRKKYRKNNGLDEN-PARIVVDSNGRTPIDADIFKKGEGKRVIAVSKC-APEKKIK 128

Query: 260 FRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
             K+  +II    D  DLK L+  L   G+  L+VEGG+ +  S ++ +LVD I  +   
Sbjct: 129 TLKEKADIIVAGNDKVDLKILVEKLKDMGIEKLMVEGGSNLNWSLLSLKLVDEIHAFIGN 188

Query: 318 IVIGEGGIPS 327
           I+IG    PS
Sbjct: 189 IIIGGSTAPS 198


>gi|164658880|ref|XP_001730565.1| hypothetical protein MGL_2361 [Malassezia globosa CBS 7966]
 gi|159104461|gb|EDP43351.1| hypothetical protein MGL_2361 [Malassezia globosa CBS 7966]
          Length = 245

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 105/207 (50%), Gaps = 22/207 (10%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
           +TL  A SQD  I  A    + ++G  S N  H LRA  DAILVGIGTVLADDP L  RL
Sbjct: 20  VTLTFAQSQDGKIAGANKRPLRLSGEKSMNMTHHLRAMHDAILVGIGTVLADDPRLNVRL 79

Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLA-PVIIVTENDDPVLALAF--RKKNINII 268
           +     SP  +ILD H ++  + ++++    A P+++  E  D     A+  R++ +   
Sbjct: 80  DNYSGLSPRPVILDCHLQMPCECRLLQRVPRADPLVLCAEPADQNARKAWETRRQALEHA 139

Query: 269 YCDCRDLK--------------KLLTILVGRGVTSLLVEGGAAVAHSFINS-RLVDSIIL 313
               R ++               +L +L    + S++VEGGAAV  S + S  L+  +I+
Sbjct: 140 GAHIRTVETFTNPQGKLHLAWPSILHVLAHEQLHSVMVEGGAAVIDSILASHHLLHKVIV 199

Query: 314 YRSQIVIGEGGI---PSPLEEG-YLEK 336
             S + +GE G+    +PL+   YL+ 
Sbjct: 200 TVSPVRVGEDGVGYTATPLQHAPYLQH 226


>gi|239917588|ref|YP_002957146.1| riboflavin biosynthesis protein RibD [Micrococcus luteus NCTC 2665]
 gi|281413925|ref|ZP_06245667.1| riboflavin biosynthesis protein RibD [Micrococcus luteus NCTC 2665]
 gi|239838795|gb|ACS30592.1| riboflavin biosynthesis protein RibD [Micrococcus luteus NCTC 2665]
          Length = 377

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 120/259 (46%), Gaps = 24/259 (9%)

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           G T +VTLEPC H G + PC+Q +++  I  +   V DP     G G   L+  G+ V  
Sbjct: 80  GLTLHVTLEPCDHTGSTGPCSQAVLDAEIGALRYAVADPTGH-DGGGAARLAAHGVHVTG 138

Query: 129 MMESEGKIFLHAYLTRQVEK--RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
                  + L A   R+V    R  +T  +A S D     A   S  ITG  S+   H +
Sbjct: 139 PTGETAALTLTARW-REVRDAGRPWVTGHLAQSLDGHAAAADGTSQWITGPDSRVHAHKV 197

Query: 187 RAQSDAILVGIGTVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
           R++ DAI+VG GTVLADDP LT R  +     H P+ ++     +   D   ++T    P
Sbjct: 198 RSRVDAIVVGTGTVLADDPRLTARDAVGAELAHQPVPVVQG--HRPVPDGAALRT---HP 252

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           V++   + DP   LA    +                   GR    +L+EGG  V  +++ 
Sbjct: 253 VVLEVLDHDPHAVLAALAAHPGPWPH-------------GRRAEHVLIEGGPRVLGAWLR 299

Query: 305 SRLVDSIILYRSQIVIGEG 323
           + LVD +++Y + +++G G
Sbjct: 300 AGLVDELMVYTAPLLLGPG 318


>gi|291617164|ref|YP_003519906.1| RibD [Pantoea ananatis LMG 20103]
 gi|291152194|gb|ADD76778.1| RibD [Pantoea ananatis LMG 20103]
          Length = 162

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 74/149 (49%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL +SR  +     NP V C+IV+DG V+ +G T   G  HAE+ A+ +        
Sbjct: 1   MMLALEYSRQALPECRPNPPVGCVIVRDGEVVAKGFTQPPGQHHAEIDAIAKLTFPISEC 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
             YVTLEPCS  GR+P CA  I E   + + + +DDP  +  G G   L + GI + R  
Sbjct: 61  EIYVTLEPCSFQGRTPSCALTIAELKPKHIYIAMDDPHPKNRGAGRTILKKAGIALHRAS 120

Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
           ES       + +  ++  + H   +I +S
Sbjct: 121 ESRRSRNFFSPIWTRLRHKHHFYRRIGIS 149


>gi|160937911|ref|ZP_02085269.1| hypothetical protein CLOBOL_02805 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439137|gb|EDP16891.1| hypothetical protein CLOBOL_02805 [Clostridium bolteae ATCC
           BAA-613]
          Length = 262

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 108/224 (48%), Gaps = 7/224 (3%)

Query: 111 VSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC 169
           VSG+G + L   GI + + ++E E +   H +       R  + +K A++ D        
Sbjct: 2   VSGKGTKILVANGIEVTEGILEEECRELNHVFFHYIKTGRPLVIMKYAMTLDGKTATFAG 61

Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229
            S  ITG  ++ +VH  R++  A++ G+ T+LADD  LTCRL      +P+RII D   +
Sbjct: 62  HSRWITGERARRRVHEDRSRYSAVMCGVETILADDSLLTCRLP--DTRNPVRIICDSQLR 119

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGR 285
              DS++  T   A  I+ T   D    L + +K   I+    R    DL  L   L   
Sbjct: 120 TPPDSQVAATCSQARTILATCCPDREAWLPYEEKGCEILLLPPREGRVDLNALTERLGQM 179

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
           G+ S+L+EGG+ +  S +N  +V+ +  Y S  + G     +P+
Sbjct: 180 GIDSVLLEGGSTLNWSALNQGIVNRVQAYISPGLFGGATAKTPV 223


>gi|150401090|ref|YP_001324856.1| hypothetical protein Maeo_0660 [Methanococcus aeolicus Nankai-3]
 gi|150013793|gb|ABR56244.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanococcus aeolicus Nankai-3]
          Length = 247

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 95/163 (58%), Gaps = 11/163 (6%)

Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC-RLNGLQEHSPMRIILDPHFKLSL 232
           I+G     +VH +R   D I+VGIGTVL DDP LT  ++N  +E +P+RI++D + ++ L
Sbjct: 51  ISGEDDLKRVHKIRKSVDGIMVGIGTVLKDDPRLTVHKINAKKEDNPIRIVVDSNLRIPL 110

Query: 233 DSKIIK---TALLAPVIIVTEN---DDPVLALAFRKKNINIIYC--DCRDLKKLLTILVG 284
           +++++    T ++A    + EN   ++ +  LA  KKNI II    D  DL KL+ +L  
Sbjct: 111 NARVLNDDATTIIATTENMGENKNINEKIRELA--KKNIIIIKTGIDKVDLVKLMELLYK 168

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           +G+ ++L+EGG  +      + LVD + +Y +  + G  G P+
Sbjct: 169 KGIKNILLEGGGTLNWGMFENNLVDEVRVYIAPKIFGGKGAPT 211


>gi|83775268|dbj|BAE65390.1| unnamed protein product [Aspergillus oryzae]
          Length = 286

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 108/219 (49%), Gaps = 26/219 (11%)

Query: 134 GKIFLHAYLTRQVEKRS--HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191
           G  FL  YL +  E+R   H+TL  A S D+ I +       ++G  +K   H LR++ D
Sbjct: 13  GSNFLEPYLPKYDERRQFPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHD 72

Query: 192 AILVGIGTVLADDPELTCRLN-------GLQEHSPMRIILDP--HFKLSLDSKIIKTAL- 241
           AIL+G+GTVLAD+P L CRL          +   P  +I+DP   + +  + ++++TA+ 
Sbjct: 73  AILIGVGTVLADNPGLNCRLEGAGGFGGLGRMWQPRPVIIDPTGRWPVHPECRMLRTAVE 132

Query: 242 ---LAPVIIVTENDD--PVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSL 290
               AP ++V+      P   +  +    + +    Y     L+   +L  L   GV S+
Sbjct: 133 GKGKAPWVVVSPGAQIHPQKLMMLKGYGGDFLRIVEYNQNWRLRWEAILRALASEGVKSV 192

Query: 291 LVEGGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGIP 326
           ++EGG  V    +N   +  +DSII+  +   +G GG+P
Sbjct: 193 MIEGGGTVLSELLNPEYTEFIDSIIVTVAPTYLGSGGVP 231


>gi|255728685|ref|XP_002549268.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candida
           tropicalis MYA-3404]
 gi|240133584|gb|EER33140.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candida
           tropicalis MYA-3404]
          Length = 247

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 106/206 (51%), Gaps = 20/206 (9%)

Query: 137 FLHAYL--TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
           FL+ YL  T     R  +TL  A S D+ I         ++   +K   H LR++ D+I 
Sbjct: 13  FLNPYLPNTETTTNRPFVTLTYAQSLDSKIAAQPGQQTKLSHLETKTMTHYLRSKHDSIF 72

Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMR-IILDP----HFKLSLDSKIIKTAL-LAPVIIV 248
           +GIGTVLADDP+L CR +   E S +R IILDP     ++ S   KI    L LAP II+
Sbjct: 73  IGIGTVLADDPKLNCRYD---EKSTIRPIILDPKAQWQYEKSTLCKICHDGLGLAPFIII 129

Query: 249 TENDDP-------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            EN +P       V     +   + ++     + K +L  L    + S+++EGGA V + 
Sbjct: 130 DENMNPSDDSRKIVENQGGKYVKLPLLEKRNENWKLILEKLKELDIKSVMIEGGAKVIND 189

Query: 302 FINSR--LVDSIILYRSQIVIGEGGI 325
            + +R  LVDS+I+  + + +G+ G+
Sbjct: 190 LLINRDNLVDSLIITVAPVFLGKNGV 215


>gi|296109936|ref|YP_003616885.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanocaldococcus infernus ME]
 gi|295434750|gb|ADG13921.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanocaldococcus infernus ME]
          Length = 214

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 84/154 (54%), Gaps = 4/154 (2%)

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +VH LRA+ DAI+VGIGTVL DDP LT       E +P+RI++D   ++ L+++++    
Sbjct: 34  RVHKLRAKVDAIMVGIGTVLKDDPRLTVH-KIKSEKNPIRIVVDSSLRIPLNARVLNKE- 91

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVA 299
              +I  TE  +     A     + +I C     DLKKL+ IL  +G+ S+L+EGG  + 
Sbjct: 92  AKTIIATTEKANKEKIKALENLGVEVIVCGKERVDLKKLMEILYEKGIRSILLEGGGTLN 151

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
            S     LVD + +Y + ++ G   +     EG+
Sbjct: 152 WSMFKEGLVDEVSVYIAPMIFGGKSVSYVDGEGF 185


>gi|154150347|ref|YP_001403965.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus
           Methanoregula boonei 6A8]
 gi|153998899|gb|ABS55322.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanoregula boonei 6A8]
          Length = 226

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 93/194 (47%), Gaps = 11/194 (5%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R  + + +A+S D  +       V I+G     +V  L+A  DA+ VGIGTVLADDP LT
Sbjct: 2   RPRVIVNVAMSADGKLSTRERRQVKISGNEDFARVDRLKAGCDAVAVGIGTVLADDPSLT 61

Query: 209 CR---------LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
            +           G  EH P+R+++D   +   D+ I+       VI V+E  DP    A
Sbjct: 62  VKSPDLRAERQREGRPEH-PVRVVIDGRARTPPDASILVKGDGLRVIAVSERADPAKVEA 120

Query: 260 FRKKNINIIYC-DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
            R K   I    D  DL ++L  L   G+ SL+VEGG  +   FI + L D I  Y   I
Sbjct: 121 LRAKAAVITAGKDEVDLSRVLDELGQMGIRSLMVEGGGTLIAGFIRAGLADEIYTYIGSI 180

Query: 319 VIGEGGIPSPLEEG 332
           VIG    P+  + G
Sbjct: 181 VIGGKDAPTLADGG 194


>gi|225555092|gb|EEH03385.1| riboflavin-specific deaminase [Ajellomyces capsulatus G186AR]
          Length = 684

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 104/215 (48%), Gaps = 26/215 (12%)

Query: 137 FLHAYLTRQVEKRSH--ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
           FL  YL R  E R    +TL  A S D+ + +       ++G  +K   H LR++ DAIL
Sbjct: 379 FLQPYLPRYEENRQFPFVTLTYASSMDSKVSLFPGVQTALSGTETKLMTHYLRSRHDAIL 438

Query: 195 VGIGTVLADDPELTCRLN-------GLQEHSPMRIILDPHFKLSLDS--KIIKTAL---- 241
           +G+GT + D+P L CRL          +   P  II+DP  +   D   +++KTA     
Sbjct: 439 IGVGTAMVDNPGLNCRLTGSGGFGGLGKMWQPRPIIVDPTGRWPADPECRLLKTAKEGKG 498

Query: 242 LAPVIIVTE--NDDPVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVE 293
            AP ++V+   N  P   LA +    + +    Y     L+   +L  L   G+TS+++E
Sbjct: 499 KAPWVVVSPGANIQPAKVLALKNHGGDYLRIVEYNQSWRLRWEAILRALGTEGITSVMIE 558

Query: 294 GGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI 325
           GGA V    +N      VDS+I+  +   +G+GG+
Sbjct: 559 GGATVISELLNPEYVDFVDSLIITVAPTFLGQGGV 593


>gi|282163718|ref|YP_003356103.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine
           reductase [Methanocella paludicola SANAE]
 gi|282156032|dbj|BAI61120.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine
           reductase [Methanocella paludicola SANAE]
          Length = 230

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 107/201 (53%), Gaps = 12/201 (5%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           +R    +  A+S D  I       V I+G    ++V  LRA SDA++VGIGTVLADDP L
Sbjct: 2   ERPFTFINSAMSADGKISTKKRKQVKISGKTDFDRVDELRASSDAVMVGIGTVLADDPSL 61

Query: 208 TCR--------LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN--DDPVLA 257
           T +        ++  +E +P RI++D   ++ L + + K  +   +++V+++   D V A
Sbjct: 62  TVKSEERRRRRVSEGKEENPARIVVDSKARIPLTADVFKKGVGKRIVVVSKSAPSDKVEA 121

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
           L   K ++ +   +  DL  +   L  RG+  L+VEGGA +  +   + LVD I ++   
Sbjct: 122 LKA-KADVIVAGGEEVDLPVMSGELKKRGIDRLMVEGGATLNWAMTRAGLVDEISVFVGN 180

Query: 318 IVIGEGGIPSPLE-EGYLEKN 337
           ++IG    P+ ++ EG  E++
Sbjct: 181 LIIGGKTAPTFMDGEGISERS 201


>gi|325092207|gb|EGC45517.1| riboflavin-specific deaminase [Ajellomyces capsulatus H88]
          Length = 684

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 104/215 (48%), Gaps = 26/215 (12%)

Query: 137 FLHAYLTRQVEKRSH--ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
           FL  YL R  E R    +TL  A S D+ + +       ++G  +K   H LR++ DAIL
Sbjct: 379 FLQPYLPRYEENRQFPFVTLTYASSMDSKVSLFPGVQTALSGPETKLMTHYLRSRHDAIL 438

Query: 195 VGIGTVLADDPELTCRLN-------GLQEHSPMRIILDPHFKLSLDS--KIIKTAL---- 241
           +G+GT + D+P L CRL          +   P  II+DP  +   D   +++KTA     
Sbjct: 439 IGVGTAMVDNPGLNCRLTGSGGFGGLGKMWQPRPIIVDPTGRWPADPECRLLKTAKEGKG 498

Query: 242 LAPVIIVTE--NDDPVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVE 293
            AP ++V+   N  P   LA +    + +    Y     L+   +L  L   G+TS+++E
Sbjct: 499 KAPWVVVSPGANIQPAKVLALKNHGGDYLRIVEYNQSWRLRWEAILRALGTEGITSVMIE 558

Query: 294 GGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI 325
           GGA V    +N      VDS+I+  +   +G+GG+
Sbjct: 559 GGATVISELLNPEYVDFVDSLIITVAPTFLGQGGV 593


>gi|241203520|ref|YP_002974616.1| bifunctional deaminase-reductase domain protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240857410|gb|ACS55077.1| bifunctional deaminase-reductase domain protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 222

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 82/157 (52%), Gaps = 4/157 (2%)

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  RA  DAI+VG GTVL+DDPELT R       +P+RI+     +L LD+K++      
Sbjct: 40  HGQRAAHDAIMVGAGTVLSDDPELTVR--HAPGPNPLRIVPSSMGRLPLDAKLLNDGHPT 97

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            V++     +  +     K N+ ++ C  R  DL  L+ IL  RG+ S++VEGG+ + HS
Sbjct: 98  VVVVSRSAKEADIEALKSKPNVEVVRCGERRVDLPGLMNILDARGIKSMIVEGGSRLLHS 157

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
              +RLV  I++    ++ G    PS +      + F
Sbjct: 158 LHEARLVHRIVIKHIPVITGSADAPSYMRPDEYSRPF 194


>gi|152993547|ref|YP_001359268.1| riboflavin biosynthesis protein RibG [Sulfurovum sp. NBC37-1]
 gi|151425408|dbj|BAF72911.1| riboflavin biosynthesis protein RibG [Sulfurovum sp. NBC37-1]
          Length = 330

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 99/234 (42%), Gaps = 38/234 (16%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  +  +  LT  NP+V  ++  DG ++        G  HAEV AL +A E 
Sbjct: 3   DEFYMQLALDKAWEYQLLTYPNPAVGAVVTLDGTILAVEAHKKAGTSHAEVLALLKAYET 62

Query: 67  ARGATA---------------------------YVTLEPCSHYGRSPPCAQFIIECGIRR 99
              +T                            YVTLEPCSH GR+P CA  +    +++
Sbjct: 63  LSQSTVDFDRMDAQKAHNFLHTIPKDFFSECSIYVTLEPCSHEGRTPACATLLEALNLKK 122

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
           V++   DP +   G G+  L         ++E   +  +  +L  Q  +R+ +  K+A +
Sbjct: 123 VIIGTKDP-IEGHGGGMDRLKNN---TSGVLEEACQALIEPFLIWQ--ERAFVLFKLAQT 176

Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213
            +  IG     S       S   VH LR + D +L+G  TV  D P L CR  G
Sbjct: 177 TNGRIGGGYLSSKS-----SLKHVHQLREKCDRLLIGGNTVRTDRPTLDCRFTG 225


>gi|255935949|ref|XP_002559001.1| Pc13g05670 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583621|emb|CAP91636.1| Pc13g05670 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 607

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 109/215 (50%), Gaps = 26/215 (12%)

Query: 137 FLHAYLTRQVEKRS--HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
           FLH YL  Q E+R   H+TL  A S D+ I +       ++G  +K   H LR++ DAIL
Sbjct: 349 FLHPYLPSQSERREFPHVTLSYASSMDSKISLQPGMQTVLSGPEAKLMTHYLRSRHDAIL 408

Query: 195 VGIGTVLADDPELTCRLNGLQEH-------SPMRIILDP--HFKLSLDSKIIKTAL---- 241
           VG+GTVLAD+P L CRL G            P  +I+DP   + +  + ++++TA+    
Sbjct: 409 VGVGTVLADNPGLNCRLEGAGGFGGLGRMWQPRPVIIDPMGRWPVHPECRMLRTAVEGKG 468

Query: 242 LAPVIIVTEND--DP---VLALAFRKKNINII-YCDCRDLK--KLLTILVGRGVTSLLVE 293
            AP ++++     +P   V+   +    + I+ Y     L+   +   L   G+ S+++E
Sbjct: 469 KAPWVVLSPGAQINPQTLVMLKGYGGDFLRIVEYNQHWRLRWEAVFRALASEGIKSVMIE 528

Query: 294 GGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI 325
           GG  V    +N   +  +DSII+  +   +G GG+
Sbjct: 529 GGGTVLSELLNPEYTSFIDSIIVTVAPTYLGRGGV 563


>gi|83815284|ref|YP_445633.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Salinibacter
           ruber DSM 13855]
 gi|83756678|gb|ABC44791.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Salinibacter
           ruber DSM 13855]
          Length = 455

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 114/253 (45%), Gaps = 31/253 (12%)

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172
           G  L+ L Q+   +DR    +G+ F              +TL  A S D  I       +
Sbjct: 212 GTSLRDLKQR---IDRYFAEKGRPF--------------VTLTYAQSLDGSIASTSGTPL 254

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
           PI+   +    H LRA  D ILVGIGTVLADDP LT R N      P+ I+LD   +   
Sbjct: 255 PISSEQALRFTHQLRALHDGILVGIGTVLADDPRLTVRHN--DGTHPVPIVLDSSLRFPS 312

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGV 287
           D++++      P+I+ + N DP            +I   C       +K LL  L  R  
Sbjct: 313 DAQLLAGDGPDPLIVTSPNADPDRKERLEAHGGTVIELSCGPEGGICVKTLLRTLGERDF 372

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFM---C 340
           +S++VEGG ++  SF+  +    +I+  + + +G     S L    ++ +   +F     
Sbjct: 373 SSVMVEGGTSILTSFLRRQCAQRVIVTVAPMFVGGTAALSSLAPEDQDTHARSDFPRLDN 432

Query: 341 VRRDYFGSDVCLE 353
           +++ ++G D+ LE
Sbjct: 433 IQQRWYGEDLVLE 445


>gi|145348534|ref|XP_001418702.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578932|gb|ABO96995.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 429

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 152/378 (40%), Gaps = 33/378 (8%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
           V+  DA  M+     +R   G+ + +P  AC + + DG V+     A  G   AE+   +
Sbjct: 51  VTPRDAEIMTRVCELARAREGIAAPHPLSACAVTRGDGDVVVEATHAGQGSTRAEIACAD 110

Query: 62  EAGEEARGAT--------AYVTLEPC-SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           E     RGAT         YV LEP            + +   G  R VV +  P   + 
Sbjct: 111 EM--RRRGATLNSSDRGTVYVNLEPAHGEVAGETRSVEALAATGATRAVVGMLHPLPGLR 168

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFL----------HAYLTRQVEKRSHITLKIAVSQDN 162
           GR ++ L ++GI V  +                    A L R          K A++ D 
Sbjct: 169 GRAVRALRERGIEVCVLEGEAEGFEGEAARACRETNEALLYRVATGLPFSVYKYAMTLDG 228

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMR 221
            I      S  +TG  ++  V   R ++DA++VG GTV  D+P LTCR   G Q   P R
Sbjct: 229 KIATDTGHSSWVTGAEAREMVFRERKRADAVVVGGGTVRKDNPRLTCREETGFQ---PAR 285

Query: 222 IILDPHFKLSLDSKIIKTALLAPVII-VTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
           ++L     L  D+K+     +AP I+  T+   P    A R K + ++  D         
Sbjct: 286 VVLTRSLDLPEDAKLWNVRGVAPTIVCTTKGVKPEFQNALRAKGVEVVEFDELTPLAAAQ 345

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI-PSPLEEGYLEK--- 336
            +  RG      E G  +A   + S +   ++ + +  ++G G + P+PL    +E    
Sbjct: 346 YMFKRGFLRCFWECGGGLAAPAMKSGVFHEVLAFIAPKLVGGGALAPTPLGNLGIEAMHD 405

Query: 337 --NFMCVRRDYFGSDVCL 352
                 VR + +G D+ +
Sbjct: 406 ALPLSGVRLEIYGRDILI 423


>gi|145607321|ref|XP_361694.2| hypothetical protein MGG_12162 [Magnaporthe oryzae 70-15]
 gi|145014902|gb|EDJ99470.1| hypothetical protein MGG_12162 [Magnaporthe oryzae 70-15]
          Length = 289

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 101/199 (50%), Gaps = 23/199 (11%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R  +TL  A S D+ + +A      ++G  SK   H LR++ DAIL+G GT +ADDP L 
Sbjct: 52  RPFVTLTFATSLDSALSLAPGVRTTLSGPQSKAMTHFLRSRHDAILIGAGTAVADDPGLN 111

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLD--SKIIKTA----LLAPVIIVTEN-----DDPVLA 257
           CR+    E  P  I++DP  + S    SK+++ A     LAP +I T       D+   A
Sbjct: 112 CRIQD-AESQPRPIVVDPRCRWSFHERSKVLQLAGEGRGLAPFVITTPEAAAAIDEQKRA 170

Query: 258 L--AFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR---- 306
           L  +   K I++ Y         D   +L  L   G+ S++VEGG  V ++ +  +    
Sbjct: 171 LLESHGGKYISLKYGGSSDDGVLDWNDILAALQHEGLNSVMVEGGGHVINTLLGHKDKND 230

Query: 307 LVDSIILYRSQIVIGEGGI 325
           LVDS+I+  +   +G+GG+
Sbjct: 231 LVDSVIITIAPTWLGQGGV 249


>gi|307353941|ref|YP_003894992.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p
           yrimidine1-reductase [Methanoplanus petrolearius DSM
           11571]
 gi|307157174|gb|ADN36554.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p
           yrimidine1-reductase [Methanoplanus petrolearius DSM
           11571]
          Length = 226

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 102/197 (51%), Gaps = 10/197 (5%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC- 209
           ++T+ +A+S D  +       V I+G     +V +L+A++DAI+VGIGTVLADDP LT  
Sbjct: 4   YVTVNLAMSADGKLSTIERKQVKISGQDDFRRVDILKAENDAIMVGIGTVLADDPSLTVK 63

Query: 210 -------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
                  RL+  ++ +P+RII+D   +    ++I+       +I V+++ DP       K
Sbjct: 64  SPELKEKRLSSGRDENPVRIIVDSKARTPCSAEILHKGPGRRIIAVSKSADPKKIDELGK 123

Query: 263 KNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
               +   D R DL+  L  +   G+ +L+VEGG ++  S     LVD        ++IG
Sbjct: 124 YAEIVQAGDERVDLRIFLAKIAEMGIETLMVEGGGSLIWSLFEDDLVDEYYTCIGNVIIG 183

Query: 322 EGGIPSPLE-EGYLEKN 337
               P+P +  G++ +N
Sbjct: 184 GASAPTPADGTGFIREN 200


>gi|118576931|ref|YP_876674.1| riboflavin specific deaminase [Cenarchaeum symbiosum A]
 gi|118195452|gb|ABK78370.1| riboflavin specific deaminase [Cenarchaeum symbiosum A]
          Length = 217

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 105/215 (48%), Gaps = 18/215 (8%)

Query: 154 LKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213
           L  A S D  I     G   I+      +VH LR++ D I+VG GTV++DDP LT R  G
Sbjct: 3   LGAAASVDGRIATR-TGDSGISSARDLRRVHRLRSEVDGIMVGRGTVVSDDPLLTARHRG 61

Query: 214 LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV-TENDDPVLALAFRKKNINIIYC-- 270
               +P+RII+DP  +L  +S+I +TA   P I+  T    P         ++ ++    
Sbjct: 62  --GRNPVRIIIDPLGRLPPESQIARTAGRIPTIVACTGRIPPRNRRRLEGLSVEVLEAGT 119

Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           D  DL  LL  L  RG+ ++L+EGGA     FI   LVD +I+  + +VIG  G   PL 
Sbjct: 120 DEMDLLVLLRALYRRGLRTILLEGGARTNWGFIERGLVDEMIITIAPVVIGGTG-SVPLV 178

Query: 331 EGYLEKNFMCVRRDYF--------GSDVCLEYIGK 357
            G   + F  V R  F        G +V L Y+ +
Sbjct: 179 GG---RGFAGVHRRAFRLKEALRQGDEVVLHYVKR 210


>gi|218194431|gb|EEC76858.1| hypothetical protein OsI_15040 [Oryza sativa Indica Group]
          Length = 288

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 91/168 (54%), Gaps = 17/168 (10%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  ++   +  +R   G TS NP V C++V+ G V+G G     G PHAEV AL +AG+ 
Sbjct: 56  DGVYIRRCVELARKAAGHTSPNPMVGCVVVRGGRVVGEGFHPEAGQPHAEVFALRDAGDL 115

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC---------------VDDPDVRV 111
           A  ATAYV+LEPC+HYGR+PPC + +I   ++ VVV                + DP+  V
Sbjct: 116 AENATAYVSLEPCNHYGRTPPCTEALINAKVKDVVVMWGLTYERRPRSIVDGMTDPNPIV 175

Query: 112 SGRGLQWLSQKGIIVDRMMESEG--KIFLHAYLTRQVEKRSHITLKIA 157
           + +G++ L   GI V   ME E   +    AY+ R +  ++  TL+ A
Sbjct: 176 ASKGIERLQSAGIDVRVCMEEEALCRKLNEAYIHRMLAGKAFATLREA 223


>gi|240281297|gb|EER44800.1| riboflavin-specific deaminase [Ajellomyces capsulatus H143]
          Length = 611

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 104/215 (48%), Gaps = 26/215 (12%)

Query: 137 FLHAYLTRQVEKRSH--ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
           FL  YL R  E R    +TL  A S D+ + +       ++G  +K   H LR++ DAIL
Sbjct: 306 FLQPYLPRYEENRQFPFVTLTYASSMDSKVSLFPGVQTALSGPETKLMTHYLRSRHDAIL 365

Query: 195 VGIGTVLADDPELTCRLN-------GLQEHSPMRIILDPHFKLSLDS--KIIKTAL---- 241
           +G+GT + D+P L CRL          +   P  II+DP  +   D   +++KTA     
Sbjct: 366 IGVGTAMVDNPGLNCRLTGSGGFGGLGKMWQPRPIIVDPIGRWPADPECRLLKTAKEGKG 425

Query: 242 LAPVIIVTE--NDDPVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVE 293
            AP ++V+   N  P   LA +    + +    Y     L+   +L  L   G+TS+++E
Sbjct: 426 KAPWVVVSPGANIQPAKVLALKNHGGDYLRIVEYNQSWRLRWEAILRALGTEGITSVMIE 485

Query: 294 GGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI 325
           GGA V    +N      VDS+I+  +   +G+GG+
Sbjct: 486 GGATVISELLNPEYVDFVDSLIITVAPTFLGQGGV 520


>gi|317157692|ref|XP_001826523.2| riboflavin-specific deaminase [Aspergillus oryzae RIB40]
          Length = 637

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 107/216 (49%), Gaps = 26/216 (12%)

Query: 137 FLHAYLTRQVEKRS--HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
           FL  YL +  E+R   H+TL  A S D+ I +       ++G  +K   H LR++ DAIL
Sbjct: 367 FLEPYLPKYDERRQFPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAIL 426

Query: 195 VGIGTVLADDPELTCRLNGLQEH-------SPMRIILDP--HFKLSLDSKIIKTAL---- 241
           +G+GTVLAD+P L CRL G            P  +I+DP   + +  + ++++TA+    
Sbjct: 427 IGVGTVLADNPGLNCRLEGAGGFGGLGRMWQPRPVIIDPTGRWPVHPECRMLRTAVEGKG 486

Query: 242 LAPVIIVTENDD--PVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVE 293
            AP ++V+      P   +  +    + +    Y     L+   +L  L   GV S+++E
Sbjct: 487 KAPWVVVSPGAQIHPQKLMMLKGYGGDFLRIVEYNQNWRLRWEAILRALASEGVKSVMIE 546

Query: 294 GGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGIP 326
           GG  V    +N   +  +DSII+  +   +G GG+P
Sbjct: 547 GGGTVLSELLNPEYTEFIDSIIVTVAPTYLGSGGVP 582


>gi|15678263|ref|NP_275378.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|6225947|sp|O26337|RIB7_METTH RecName: Full=Putative 5-amino-6-(5-phosphoribosylamino)uracil
           reductase; AltName: Full=HTP reductase
 gi|2621283|gb|AAB84741.1| riboflavin-specific deaminase [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 216

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 112/223 (50%), Gaps = 23/223 (10%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R ++ L  A++ D  I  A  GS  I+G     +VH LR + DAI+VGI TVLADDP LT
Sbjct: 2   RPYVILNAAMTLDGKIATA-TGSSEISGEEDLRRVHELRRECDAIMVGINTVLADDPRLT 60

Query: 209 C-RLNGLQEHSPMRIILD------PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
             R++     +P+R+++D      PHF++  D         AP +I      P   +A  
Sbjct: 61  VHRVDAAPGDNPVRVVVDSMARTPPHFRVLNDE--------APTVIGVSESAPPERVAEL 112

Query: 262 KKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
           +K   ++    R  DL  LL  L G G+  L++EGG+ + +S +   LVD + +  + ++
Sbjct: 113 RKRAEVVVAGTRRVDLHLLLERLHGMGIERLMLEGGSTLNYSMLTGGLVDEVRVCIAPMI 172

Query: 320 IGEGGIPSPLEEGYLEKNFMCVR----RDY-FGSDVCLEYIGK 357
           +G     + ++   +++    +R    R Y  G D+ +EY  K
Sbjct: 173 VGGRDARTLVDGEGIDEMADAIRLELKRSYTLGEDLIVEYTVK 215


>gi|260907065|ref|ZP_05915387.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Brevibacterium
           linens BL2]
          Length = 473

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 114/231 (49%), Gaps = 16/231 (6%)

Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
           L AY T  +     +  ++A S+D  I  +   +  ++G I +  +H +RA   A+LVG 
Sbjct: 233 LAAYDT--ISDGDEVVAQLAQSEDGFIATSDGDAQFVSGQIDRAHLHRIRASVGAVLVGC 290

Query: 198 GTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
           GTV+ADDP LT R   +   +P+R++LDPH ++   + ++ +     + ++     P   
Sbjct: 291 GTVIADDPRLTVR--AVPGENPVRVVLDPHGRVPTTATVLTSPESPTLWLIGAEVAPSSD 348

Query: 258 LAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
           +      + +   +  D+   ++++++      S+LVEGG     SF+ + ++D + L  
Sbjct: 349 VGDHVSVVRLPAAEGDDIPPARIVSLIREYVAGSILVEGGGRTVSSFLAAGVLDRLFLTS 408

Query: 316 SQIVIGEGGIP------SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
           + + IG  G+P      +P+    L + F   RR  FG D+C EY+   L 
Sbjct: 409 APVFIGN-GVPGIRFEGTPVMAEALRRPF---RRYQFGEDMCTEYLLSELA 455


>gi|70982261|ref|XP_746659.1| riboflavin-specific deaminase [Aspergillus fumigatus Af293]
 gi|66844282|gb|EAL84621.1| riboflavin-specific deaminase [Aspergillus fumigatus Af293]
 gi|159122105|gb|EDP47227.1| riboflavin-specific deaminase [Aspergillus fumigatus A1163]
          Length = 622

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 107/215 (49%), Gaps = 26/215 (12%)

Query: 137 FLHAYLTRQVEKRS--HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
           FL +YL R  EKR   H+TL  A S D+ I +       ++G  +K   H LR++ DAIL
Sbjct: 363 FLDSYLPRPGEKRELPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAIL 422

Query: 195 VGIGTVLADDPELTCRLNGLQEH-------SPMRIILDP--HFKLSLDSKIIKTAL---- 241
           +G+GTVLAD+P L CRL G            P  +++DP   + +  + ++++TA+    
Sbjct: 423 IGVGTVLADNPGLNCRLEGAGGFGGLGRMWQPRPVVIDPTGRWPVHPECRMLRTAVEGKG 482

Query: 242 LAPVIIVTENDD--PVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVE 293
            AP +IV+      P   +  +    + +    Y     L+   +L  L   G+ S+++E
Sbjct: 483 KAPWVIVSPGAQIHPQKLMMLKGYGGDFLRIVEYNQNWRLRWEAILRALASEGIKSVMIE 542

Query: 294 GGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI 325
           GG  V    +N   +  +DSII+  +   +G GG+
Sbjct: 543 GGGTVLSELLNPEYTEFIDSIIVTVAPTYLGRGGV 577


>gi|329766024|ref|ZP_08257585.1| deaminase-reductase domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329137479|gb|EGG41754.1| deaminase-reductase domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 218

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 93/178 (52%), Gaps = 6/178 (3%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
           + R H+ L  A+S D  I  +  G   ++  I K ++H LR++ DAILVG  TV  DDP 
Sbjct: 3   KSRPHVILSAAISIDGKIA-SRSGDSKLSSQIDKVRLHKLRSKVDAILVGKNTVQRDDPL 61

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA-FRKKNI 265
           LT R    +  +P+RIILD    + ++SKI++T    P II          L    K  +
Sbjct: 62  LTVRYT--KGKNPIRIILDSQGTIPINSKILQTCDKVPTIIAVSRKISNENLKKLNKFPV 119

Query: 266 NIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            II    +  ++K L+T L  R + ++LVEGG  V   FI +++ D I +  S  +IG
Sbjct: 120 EIIMSGENLVNIKSLMTSLSKRKIKTILVEGGGTVNWQFIQNKMFDEIFITISPFIIG 177


>gi|240145210|ref|ZP_04743811.1| riboflavin biosynthesis protein RibD domain protein [Roseburia
           intestinalis L1-82]
 gi|257202673|gb|EEV00958.1| riboflavin biosynthesis protein RibD domain protein [Roseburia
           intestinalis L1-82]
          Length = 222

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 6/155 (3%)

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++ QVH +R +   I+VG GTV+ADDP L CRL   Q   P+RI+ D   ++ L S+I++
Sbjct: 35  AREQVHRMRHEMTGIMVGAGTVIADDPMLNCRLP--QTKDPVRIVCDTTLRIPLKSRIVQ 92

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINII---YCDCR-DLKKLLTILVGRGVTSLLVEG 294
           TA     II T   D      ++K    II   + D + DLK+L+  L   G+ S+L+EG
Sbjct: 93  TAEEQNTIIATCCQDEAKIREYQKYGCRIIVTEHADGKVDLKELMRQLGADGIESVLLEG 152

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
           GA +  S + + +V+ +  Y +  + G     SP+
Sbjct: 153 GAMLNWSALEAGIVNEVYAYVAPKLFGGADAKSPV 187


>gi|88603813|ref|YP_503991.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanospirillum
           hungatei JF-1]
 gi|88189275|gb|ABD42272.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Methanospirillum hungatei JF-1]
          Length = 225

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 107/215 (49%), Gaps = 29/215 (13%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R ++ + +AVS D  +       V I+G    ++V  ++A  DAI+VGIGTVLADDP LT
Sbjct: 2   RPYVIVNVAVSADGKLSTRERRQVKISGKEDFDRVDEIKAGCDAIMVGIGTVLADDPSLT 61

Query: 209 CR---------LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
            +          NG  EH P+RI++D   +   D+KI+       +I V+        LA
Sbjct: 62  IKSADRIAERVRNGKPEH-PVRIVVDSQARTPPDAKILHKGPGLRIIAVS--------LA 112

Query: 260 FRKKNINIIYCDCR---------DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
             ++NI+ +              DL  LLT L  +G+  L+VEGG  +    +++ LVD 
Sbjct: 113 APEENISALKNHAEIIQAGEVTVDLPVLLTKLAEKGIKRLMVEGGGTLIWGMLSAGLVDE 172

Query: 311 IILYRSQIVIGEGGIPSPLE-EGY-LEKNFMCVRR 343
           + ++   I+IG    P+  +  GY LE +F  + R
Sbjct: 173 LTMFVGNIIIGGKDAPTLADGTGYVLESDFPVLER 207


>gi|294507525|ref|YP_003571583.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Salinibacter
           ruber M8]
 gi|294343853|emb|CBH24631.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Salinibacter
           ruber M8]
          Length = 459

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 114/253 (45%), Gaps = 31/253 (12%)

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172
           G  L+ L Q+   +DR    +G+ F              +TL  A S D  I       +
Sbjct: 216 GTSLRDLKQR---IDRYFAEKGQPF--------------VTLTYAQSLDGSIASKSGTPL 258

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
           PI+   +    H LRA  D ILVGIGTVLADDP LT R N      P+ I+LD   +   
Sbjct: 259 PISSEQALRFTHQLRALHDGILVGIGTVLADDPRLTVRHN--DGTHPVPIVLDSSLRFPS 316

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGV 287
           D++++      P+I+ + N DP            +I   C       ++ LL  L  R  
Sbjct: 317 DAQLLAGDGPDPLIVTSPNADPDRKERLEAHGGTVIELSCGPEGGICVRTLLRTLGERDF 376

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFM---C 340
           +S++VEGG ++  SF+  +    +I+  + + +G     S L    ++ +   +F     
Sbjct: 377 SSVMVEGGTSILTSFLRRQCAQRVIVTVAPMFVGGTAALSSLAPEEQDTHARSDFPRLDN 436

Query: 341 VRRDYFGSDVCLE 353
           +++ ++G D+ LE
Sbjct: 437 IQQRWYGEDLVLE 449


>gi|317034868|ref|XP_001400638.2| riboflavin-specific deaminase [Aspergillus niger CBS 513.88]
          Length = 654

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 107/215 (49%), Gaps = 26/215 (12%)

Query: 137 FLHAYLTRQVEKRS--HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
           FL  YL +  ++R   H+TL  A S D+ I +       ++G  +K   H LR++ DAIL
Sbjct: 387 FLEPYLPKHNDRRQFPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAIL 446

Query: 195 VGIGTVLADDPELTCRLNGLQEH-------SPMRIILDP--HFKLSLDSKIIKTAL---- 241
           +G+GTVLAD+P L CRL G            P  +++DP   + +  D ++++TA+    
Sbjct: 447 IGVGTVLADNPGLNCRLEGAGGFGGLGRMWQPRPVVVDPTGRWPVHPDCRMLRTAVEGKG 506

Query: 242 LAPVIIVTEND--DPVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVE 293
            AP ++V+     DP   +  +    + +    Y     L+   +L  L   G+ S+++E
Sbjct: 507 KAPWVVVSPGARIDPQKLMMLKGYGGDYLRIMEYNQNWRLRWEAILRALASEGIKSVMIE 566

Query: 294 GGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI 325
           GG  V    +N   +  +DSII+  +   +G GG+
Sbjct: 567 GGGTVLSELLNPEYTEFIDSIIVTVAPTYLGSGGV 601


>gi|134081305|emb|CAK41808.1| unnamed protein product [Aspergillus niger]
          Length = 651

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 107/215 (49%), Gaps = 26/215 (12%)

Query: 137 FLHAYLTRQVEKRS--HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
           FL  YL +  ++R   H+TL  A S D+ I +       ++G  +K   H LR++ DAIL
Sbjct: 384 FLEPYLPKHNDRRQFPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAIL 443

Query: 195 VGIGTVLADDPELTCRLNGLQEH-------SPMRIILDP--HFKLSLDSKIIKTAL---- 241
           +G+GTVLAD+P L CRL G            P  +++DP   + +  D ++++TA+    
Sbjct: 444 IGVGTVLADNPGLNCRLEGAGGFGGLGRMWQPRPVVVDPTGRWPVHPDCRMLRTAVEGKG 503

Query: 242 LAPVIIVTEND--DPVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVE 293
            AP ++V+     DP   +  +    + +    Y     L+   +L  L   G+ S+++E
Sbjct: 504 KAPWVVVSPGARIDPQKLMMLKGYGGDYLRIMEYNQNWRLRWEAILRALASEGIKSVMIE 563

Query: 294 GGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI 325
           GG  V    +N   +  +DSII+  +   +G GG+
Sbjct: 564 GGGTVLSELLNPEYTEFIDSIIVTVAPTYLGSGGV 598


>gi|119486680|ref|XP_001262326.1| riboflavin-specific deaminase [Neosartorya fischeri NRRL 181]
 gi|119410483|gb|EAW20429.1| riboflavin-specific deaminase [Neosartorya fischeri NRRL 181]
          Length = 627

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 108/215 (50%), Gaps = 26/215 (12%)

Query: 137 FLHAYLTRQVEKRS--HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
           FL +YL R  EKR   H+TL  A S D+ I +       ++G  +K   H LR++ DAIL
Sbjct: 368 FLDSYLPRLDEKRELPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAIL 427

Query: 195 VGIGTVLADDPELTCRLNGLQEH-------SPMRIILDP--HFKLSLDSKIIKTAL---- 241
           +G+GTVLAD+P L CRL G            P  +++DP   + +  + ++++TA+    
Sbjct: 428 IGVGTVLADNPGLNCRLEGAGGFGGLGRMWQPRPVVIDPTGRWPVHPECRMLRTAVEGKG 487

Query: 242 LAPVIIVTENDD--PVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVE 293
            AP +IV+      P   +  +    + +    Y     L+   +L  L   G+ S+++E
Sbjct: 488 KAPWVIVSPGAQIHPQKLMMLKGYGGDFLRIVEYNQNWRLRWEAILRALASEGIKSVMIE 547

Query: 294 GGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI 325
           GG  V    +N   ++ +DSII+  +   +G GG+
Sbjct: 548 GGGTVLSELLNPEYTQFIDSIIVTVAPTYLGRGGV 582


>gi|154273018|ref|XP_001537361.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150415873|gb|EDN11217.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 531

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 103/215 (47%), Gaps = 26/215 (12%)

Query: 137 FLHAYLTRQVEKRSH--ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
           FL  YL R  E R    +TL  A S D+ + +       ++G  +K   H LR++ DAIL
Sbjct: 226 FLQPYLPRYEENRQFPFVTLTYASSMDSKVSLFPGVQTALSGPETKLMTHYLRSRHDAIL 285

Query: 195 VGIGTVLADDPELTCRLN-------GLQEHSPMRIILDPHFKLSLDS--KIIKTAL---- 241
           +G+G  + D+P L CRL          +   P  II+DP  +   D   +++KTA     
Sbjct: 286 IGVGAAMVDNPGLNCRLTGSGGFGGLGKMWQPRPIIVDPTGRWPADPECRLLKTAKEGKG 345

Query: 242 LAPVIIVTE--NDDPVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVE 293
            AP ++V+   N  P   LA +    + +    Y     L+   +L  L   G+TS+++E
Sbjct: 346 KAPWVVVSPGANIQPAKVLALKNHGGDYLRIVEYNQSWRLRWEAILRALGTEGITSVMIE 405

Query: 294 GGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI 325
           GGA V    +N      VDS+I+  +   +G+GG+
Sbjct: 406 GGATVISELLNPEYVDFVDSLIITVAPTFLGQGGV 440


>gi|219113687|ref|XP_002186427.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583277|gb|ACI65897.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 386

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 82/174 (47%), Gaps = 49/174 (28%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTAYGGCPHAEVQAL 60
           +S+ D  F+  A+  ++  +G T  NP+V C++V  +DG V+G+G     G PHAEV AL
Sbjct: 45  LSTEDEGFLRQAIECAKEGLGHTFPNPAVGCVLVNQEDGTVLGKGFHPRAGYPHAEVFAL 104

Query: 61  EEAG----------------EEARGA-------------------------------TAY 73
            +A                 +  +GA                               TAY
Sbjct: 105 LQAAGHLEDGVAAGQAVVKKQNEQGAILNEVLRLSQQYTTDDGPEQLFEDTLAKSNVTAY 164

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           VTLEPCSHYG++PPCA  +      RVVV   DP+ +V G G++ L + G+ VD
Sbjct: 165 VTLEPCSHYGKTPPCAVTLALAQASRVVVGFRDPNPKVDGGGVKLLREVGVAVD 218


>gi|50550031|ref|XP_502488.1| YALI0D06501p [Yarrowia lipolytica]
 gi|49648356|emb|CAG80676.1| YALI0D06501p [Yarrowia lipolytica]
          Length = 250

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 102/228 (44%), Gaps = 20/228 (8%)

Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
           K  L  YL  + E  +H+TL  A S D+ I         I+   +K   H LRA  D IL
Sbjct: 15  KQTLTPYLPPKGE--NHVTLTYAQSLDSRIAAKRDERTTISSEETKRMTHWLRAHHDGIL 72

Query: 195 VGIGTVLADDPELTCRL-----NGLQEHSPMRIILDPHFKLSLDSKII-----KTALLAP 244
           VG+ T + D+P L C+        LQE SP  IILDP F+    +  +          AP
Sbjct: 73  VGVQTAIIDNPGLHCKSFTDEDYKLQEQSPQPIILDPQFRWEFKATKLACNAAHNGYKAP 132

Query: 245 VIIVTENDDPVLALAFRKKNI-----NIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAV 298
           +++     +   A  F+KK I      ++  D    K +   L    G+ S++VEGGA V
Sbjct: 133 IVVTKSGYEIDTAKKFKKKGIEDFGGKVLMLDDFSWKSIFDALHNDCGLKSIMVEGGAHV 192

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP-SPLEEGYLEK-NFMCVRRD 344
             S +     DS+++    + +G  G+  SP E   L+K  +    RD
Sbjct: 193 IESMLEVGAFDSLVVTVGPVFLGRAGLEVSPKESVILDKVKWAAAERD 240


>gi|16125138|ref|NP_419702.1| riboflavin biosynthesis protein RibD [Caulobacter crescentus CB15]
 gi|221233866|ref|YP_002516302.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Caulobacter crescentus NA1000]
 gi|13422148|gb|AAK22870.1| riboflavin biosynthesis protein RibD [Caulobacter crescentus CB15]
 gi|220963038|gb|ACL94394.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Caulobacter crescentus NA1000]
          Length = 331

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 80/160 (50%), Gaps = 13/160 (8%)

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           E G  AR  T  VTLEPC+H+GR+PPC + I+    R V + V DP++ V+G G   L  
Sbjct: 71  ERGAAARIDTLLVTLEPCNHHGRTPPCVEAILASPARTVWIAVRDPNLAVAGGGAARLEA 130

Query: 122 KGIIVDRMME----------SEGKIFLHAYLTRQVEKRSHITLKIAVS-QDNMIGMAGCG 170
            G+ V  + +             +  +  +     E R  +T+K A++ Q +MI   G  
Sbjct: 131 AGLEVRFLSDLAHPEASDLVRRARRLIAPFALWAREGRPWLTIKQAINRQGDMIPPPGAS 190

Query: 171 SVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
           +   T   S    H LR ++DAI+ G GTVLAD P  T R
Sbjct: 191 T--FTSETSLTLAHDLRRRADAIITGSGTVLADAPAFTVR 228


>gi|261884015|ref|ZP_06008054.1| riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Campylobacter fetus subsp. venerealis str. Azul-94]
          Length = 213

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 96/178 (53%), Gaps = 13/178 (7%)

Query: 157 AVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQ 215
           A + D  I      S  IT   ++  VH+LR +  AI+VG+ TV+AD+PELT R+ NG  
Sbjct: 1   ASTLDGKIATYTGDSKWITSPEARYDVHVLRNEHMAIMVGVNTVVADNPELTTRIPNG-- 58

Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI------IY 269
             +P+RII+D   ++ +DSK++   L   +I  + N D         K + +      ++
Sbjct: 59  -RNPIRIIMDSTLRIPIDSKVVTDGLAETLIFTSVNYDVEKRKVLESKGVKVFPTTGTVH 117

Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
            D  D+ +LL     + ++S+L+EGG ++  +F+ +RLVD  + Y +  +IG    P+
Sbjct: 118 TDPHDVARLLG---EQNISSVLIEGGGSIHSAFLENRLVDKGVHYFAPKLIGGQFAPT 172


>gi|254578456|ref|XP_002495214.1| ZYRO0B06028p [Zygosaccharomyces rouxii]
 gi|238938104|emb|CAR26281.1| ZYRO0B06028p [Zygosaccharomyces rouxii]
          Length = 231

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 94/197 (47%), Gaps = 13/197 (6%)

Query: 136 IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195
           +FL  YL    + +  ITL  A S D+ I         I+   +K   H LR   D ILV
Sbjct: 12  VFLRPYLPPDNDSKPFITLTYAQSLDSRISKGHGIRTTISHPETKTMTHYLRYHHDGILV 71

Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL-----LAPVIIVTE 250
           G GT LADDP L C+ N   + SP  IIL+   K   +   ++          P+I+V+E
Sbjct: 72  GTGTALADDPGLNCKYNDAMDQSPRPIILNHSGKWKFNGSKLQELYEKGHGKKPIIVVSE 131

Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFI-NSRLV 308
              PV        +++ + C  R    L   L    G+ S++VEGGA V +  + +S LV
Sbjct: 132 L--PV----DEDSSVDYLVCQSRQWSILFDKLHKEYGLKSIMVEGGANVINQLLMSSNLV 185

Query: 309 DSIILYRSQIVIGEGGI 325
           +S+I+    + +GE G+
Sbjct: 186 NSLIITVGPVYLGEKGV 202


>gi|67541631|ref|XP_664583.1| hypothetical protein AN6979.2 [Aspergillus nidulans FGSC A4]
 gi|40742435|gb|EAA61625.1| hypothetical protein AN6979.2 [Aspergillus nidulans FGSC A4]
 gi|259483715|tpe|CBF79332.1| TPA: riboflavin-specific deaminase (AFU_orthologue; AFUA_4G04730)
           [Aspergillus nidulans FGSC A4]
          Length = 609

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 106/215 (49%), Gaps = 26/215 (12%)

Query: 137 FLHAYLTRQVEKRS--HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
           FL  YL +  E+R   H+TL  A S D+ I +       ++G  +K   H LR++ DAIL
Sbjct: 347 FLEPYLPKSDERRELPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAIL 406

Query: 195 VGIGTVLADDPELTCRLNGLQEH-------SPMRIILDPHFKLS--LDSKIIKTAL---- 241
           +G+GTVLAD+P L CRL G            P  +I+DP  + S   DS++++TA+    
Sbjct: 407 IGVGTVLADNPGLNCRLQGAGGFGGLGRMWQPRPVIIDPTGRWSPGADSRLLRTAVEGKG 466

Query: 242 LAPVIIVTENDD--PVLALAFRKKNINII-----YCDCR-DLKKLLTILVGRGVTSLLVE 293
            AP ++V+      P   L  +      +     + + R   + +   L   G+ S+++E
Sbjct: 467 RAPWVVVSPGAQIHPSKLLMLKGYGGEFLRIMEYHQNWRLRWESIFRALASEGIKSVMIE 526

Query: 294 GGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI 325
           GG  V    +N   +  +DS+++  +   +G GG+
Sbjct: 527 GGGRVLSELLNPEYAEFIDSLVVTLAPTYLGSGGV 561


>gi|258577771|ref|XP_002543067.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237903333|gb|EEP77734.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 612

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 105/215 (48%), Gaps = 26/215 (12%)

Query: 137 FLHAYLTRQVEKRS--HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
           FL  YL  + E R   H+TL  A S D  I +A      ++G  SK   H LR++ DAIL
Sbjct: 338 FLEPYLPNRGENRKFPHVTLTYAQSMDGKISLAPGVQTALSGPESKLMTHYLRSRHDAIL 397

Query: 195 VGIGTVLADDPELTCRLN-------GLQEHSPMRIILDPHFKLSLDS--KIIKTALL--- 242
           VG+GT LAD+P L CRL          +   P  +I+DP  + + +   +++++AL    
Sbjct: 398 VGVGTALADNPGLNCRLEGAGGYGGLGKMWQPRPVIVDPTGRWTFNPECRMLQSALAGKG 457

Query: 243 -APVIIVTENDD-PVLALAFRKKN----INIIYCDCRDLKKLLTI---LVGRGVTSLLVE 293
             P I+V+   + P   +   KK+    + I   +     +  TI   L   G++S++VE
Sbjct: 458 KGPWIVVSPGANIPADRILLLKKHGGDFLRIAEFNPAWRLRWSTIFGALAAEGISSVMVE 517

Query: 294 GGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI 325
           GG  V    +N      +DS+I+  +   +G GG+
Sbjct: 518 GGGVVLSELLNPEYEDFIDSVIVTVAPTYLGRGGV 552


>gi|20092885|ref|NP_618960.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanosarcina
           acetivorans C2A]
 gi|19918192|gb|AAM07440.1| riboflavin-specific deaminase [Methanosarcina acetivorans C2A]
          Length = 227

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 97/189 (51%), Gaps = 11/189 (5%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R  I +  A+S D  +       V I+G +   ++  LRAQ+DAI+VGIGTVLADDP LT
Sbjct: 3   RPFIFINSAMSADGKLSTKERKQVKISGKLDFERMDELRAQADAIMVGIGTVLADDPSLT 62

Query: 209 --------CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
                    R    +  +P+RII+D   +  LD+ I K      +I V+ N  P   +  
Sbjct: 63  VKSPERKAARKAAGKSENPVRIIIDSAARTPLDADIFKKGEGLRIIAVS-NSAPAEKIKS 121

Query: 261 RKKNINIIYC-DCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
            ++   +I   D + +L +L  +L   G+ +L+VEGGA +    +++ LVD +  +   +
Sbjct: 122 LEEKARVIKTGDFKVNLPELAVLLKEMGINTLMVEGGATLNWGMLSAGLVDEVYTFVGNL 181

Query: 319 VIGEGGIPS 327
           +IG    P+
Sbjct: 182 IIGGKTAPT 190


>gi|322706817|gb|EFY98397.1| riboflavin biosynthesis protein Rib7 [Metarhizium anisopliae ARSEF
           23]
          Length = 546

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 103/202 (50%), Gaps = 22/202 (10%)

Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
           Q   R  +TL  A S D+ + +A      ++G  SK   H LR++  AILVG+ TVLAD+
Sbjct: 305 QTSNRPFVTLTFATSLDSSLSLAPGVRTHLSGPGSKAMTHYLRSRHAAILVGVSTVLADN 364

Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDS-----KIIKT-ALLAPVII--VTENDDPVL 256
           P L+CR+ G     P  II+DPH + +  S     +I ++ A LAP I+  + E   P  
Sbjct: 365 PGLSCRIEG-SASQPRPIIIDPHLRWTPRSSDQVFQICRSGAGLAPFILTGLLEAQIPRE 423

Query: 257 ALAFRK----KNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGGAAVAHSFI--- 303
           ++   +    K I I            +   +   L+  G+TS++VEGG  + +S +   
Sbjct: 424 SVELLQQHGGKYIRIAPATSSKDRVRFEWNDVFQTLLSEGLTSVMVEGGGQIINSLLSPT 483

Query: 304 NSRLVDSIILYRSQIVIGEGGI 325
           N  L+DS+I+  +   +G+GG+
Sbjct: 484 NHNLIDSVIVTIAPTWLGKGGV 505


>gi|225350924|ref|ZP_03741947.1| hypothetical protein BIFPSEUDO_02499 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158380|gb|EEG71622.1| hypothetical protein BIFPSEUDO_02499 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 191

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 79/150 (52%), Gaps = 9/150 (6%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE---EAGE 65
           ++M+ AL  +    G  + NP V  ++V+DG ++  G       PHAE  A +   E G 
Sbjct: 41  KYMTQALELAHKGAGWVNPNPLVGTVVVRDGEILAAGYHDRYRGPHAERMAFDYADEHGA 100

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +  GAT   TLEPC H G  P C   I+  GI RVVV   DP+  V+G+GL+ L + G+ 
Sbjct: 101 DMHGATVIDTLEPCCHVGSQPACTDLILSHGITRVVVGSIDPNPIVAGKGLRILEENGVE 160

Query: 125 IVDRMMESE----GKIFLHAYLTRQVEKRS 150
           +V  +M +E     + F H Y+T  +  R+
Sbjct: 161 VVYDVMRAECDAINRHFFH-YITTGMGVRT 189


>gi|224438172|ref|ZP_03659107.1| riboflavin biosynthesis protein RibD [Helicobacter cinaedi CCUG
           18818]
 gi|313144617|ref|ZP_07806810.1| riboflavin biosynthesis protein RibD [Helicobacter cinaedi CCUG
           18818]
 gi|313129648|gb|EFR47265.1| riboflavin biosynthesis protein RibD [Helicobacter cinaedi CCUG
           18818]
          Length = 330

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 100/213 (46%), Gaps = 38/213 (17%)

Query: 28  NPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAG------------EEA------- 67
           NPSV  +I + +G ++ RGV +  G PHAEV A+++A             E +       
Sbjct: 26  NPSVGAIITRENGEILSRGVHSLAGSPHAEVIAIKQAYFTLTQDSKILNLESSLELHNFL 85

Query: 68  --------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                   +  + YV+LEPC+HYG++PPCA  I E G  +VV+   D     SG G+Q L
Sbjct: 86  LHNHNGIFKNHSLYVSLEPCNHYGKTPPCANLIKELGFAKVVIGTKDSHSLASG-GMQTL 144

Query: 120 SQKGI--IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
            + GI   + ++     K+ L   + R  EK   +  KIA+  D    + G  S   +  
Sbjct: 145 QEAGIHTSLSQIQNEAQKLLLPFEILR--EKGRFVLFKIAMRLDGSY-VNGQISAESSRI 201

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
            + NQ    R+  D + +   T+ +D+P L  R
Sbjct: 202 FTHNQ----RSVCDYLCISGATLRSDNPTLNAR 230


>gi|115388877|ref|XP_001211944.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114196028|gb|EAU37728.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 624

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 107/215 (49%), Gaps = 26/215 (12%)

Query: 137 FLHAYLTRQVEKRS--HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
           FL  YL +  E+R   H+TL  A S D+ I +       ++G  +K   H LR++ DAIL
Sbjct: 380 FLEPYLPKYDERRQFPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAIL 439

Query: 195 VGIGTVLADDPELTCRLNGLQEH-------SPMRIILDP--HFKLSLDSKIIKTAL---- 241
           +G+GTVLAD+P L CRL G            P  +++DP   + +  + ++++TA+    
Sbjct: 440 IGVGTVLADNPGLNCRLEGAGGFGGLGRMWQPRPVVIDPTGRWPVHPECRMLRTAVEGKG 499

Query: 242 LAPVIIVTEND--DPVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVE 293
            AP ++V+     DP   +  +    + +    Y     L+   +L  L   G+ S+++E
Sbjct: 500 KAPWVVVSPGAQIDPQKLMMLKGYGGDFLRIVEYNQNWRLRWEGILRALASEGIKSVMIE 559

Query: 294 GGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI 325
           GG  V    +N   +  +D+II+  +   +G GG+
Sbjct: 560 GGGTVLSELLNPEYTEFIDTIIVTVAPTYLGSGGV 594


>gi|116753917|ref|YP_843035.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanosaeta thermophila PT]
 gi|116665368|gb|ABK14395.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Methanosaeta thermophila PT]
          Length = 222

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 97/198 (48%), Gaps = 10/198 (5%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R ++ +  A+S D  I       V I+G     +V  LRA+SDA++VG+GTV+ADDP L 
Sbjct: 2   RPYVLINSAMSADGKISSFLRRQVRISGSEDLLRVERLRAESDAVMVGLGTVIADDPTLR 61

Query: 209 CRLNGLQE--------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
            +   L+          +P+RI+ D   +   +++++    +  V      D   L    
Sbjct: 62  VKSEALRSWRLERGVPENPLRIVADSRARTPPEARVLGPGCIVAVSRYAPEDR--LKELS 119

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
            +  I I   D  DL++LL +L  RGV  L+VEGG  +  S I   LVD I ++   +VI
Sbjct: 120 ERCEIAICGEDRVDLRELLEMLYRRGVRRLMVEGGGTLNWSLIEQGLVDEICVFVGPMVI 179

Query: 321 GEGGIPSPLEEGYLEKNF 338
           G    P+ ++     +NF
Sbjct: 180 GGQDAPTLVDGRGFPENF 197


>gi|226288491|gb|EEH44003.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Paracoccidioides
           brasiliensis Pb18]
          Length = 665

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 101/215 (46%), Gaps = 26/215 (12%)

Query: 137 FLHAYLTRQVEKRSH--ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
           FL  YL R    R    +TL  A S D  + +       ++G  SK   H LR++ DAIL
Sbjct: 377 FLQPYLPRHENGRQFPFVTLTYASSMDARVSLLPGVQTALSGPESKLMTHYLRSRHDAIL 436

Query: 195 VGIGTVLADDPELTCRLN-------GLQEHSPMRIILDPHFKLSLDS--KIIKTAL---- 241
           +G+GT +AD+P L CRL          +   P  II+DP  + S D   ++++TA     
Sbjct: 437 IGVGTAMADNPGLNCRLEGSGGFGGLGKMWQPRPIIVDPTGRWSADPECRLLRTAKEGKG 496

Query: 242 LAPVIIVTE--NDDPVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVE 293
            AP IIV+   N  P   L  +    + +    Y     L+   +L  L   G+ S+++E
Sbjct: 497 KAPWIIVSPGANIQPAKVLRLKTHGGDYLRIVEYNQSWRLRWEAILRALGTEGINSVMIE 556

Query: 294 GGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI 325
           GGA V    +N      VDS+I+  +   +G GG+
Sbjct: 557 GGATVISELLNPEYVDFVDSLIVTVAPTFLGRGGV 591


>gi|295671871|ref|XP_002796482.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Paracoccidioides
           brasiliensis Pb01]
 gi|226283462|gb|EEH39028.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Paracoccidioides
           brasiliensis Pb01]
          Length = 655

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 101/215 (46%), Gaps = 26/215 (12%)

Query: 137 FLHAYLTRQVEKRSH--ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
           FL  YL R    R    +TL  A S D  + +       ++G  SK   H LR++ DAIL
Sbjct: 368 FLQPYLPRHENGRQFPFVTLTYASSMDARVSLLPGVQTALSGPESKLMTHYLRSRHDAIL 427

Query: 195 VGIGTVLADDPELTCRLN-------GLQEHSPMRIILDPHFKLSLDS--KIIKTAL---- 241
           +G+GT +AD+P L CRL          +   P  II+DP  + S D   ++++TA     
Sbjct: 428 IGVGTAMADNPGLNCRLEGSGGFGGLGKMWQPRPIIVDPTGRWSADPECRLLRTAKEGKG 487

Query: 242 LAPVIIVTE--NDDPVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVE 293
            AP IIV+   N  P   L  +    + +    Y     L+   +L  L   G+ S+++E
Sbjct: 488 KAPWIIVSPGANIQPAKVLRLKTHGGDYLRIVEYNQSWRLRWEAILRALGTEGINSVMIE 547

Query: 294 GGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI 325
           GGA V    +N      VDS+I+  +   +G GG+
Sbjct: 548 GGATVISELLNPEYVDFVDSLIVTVAPTFLGRGGV 582


>gi|225681364|gb|EEH19648.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Paracoccidioides
           brasiliensis Pb03]
          Length = 668

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 101/215 (46%), Gaps = 26/215 (12%)

Query: 137 FLHAYLTRQVEKRSH--ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
           FL  YL R    R    +TL  A S D  + +       ++G  SK   H LR++ DAIL
Sbjct: 380 FLQPYLPRHENGRQFPFVTLTYASSMDARVSLLPGVQTALSGPESKLMTHYLRSRHDAIL 439

Query: 195 VGIGTVLADDPELTCRLN-------GLQEHSPMRIILDPHFKLSLDS--KIIKTAL---- 241
           +G+GT +AD+P L CRL          +   P  II+DP  + S D   ++++TA     
Sbjct: 440 IGVGTAMADNPGLNCRLEGSGGFGGLGKMWQPRPIIVDPTGRWSADPECRLLRTAKEGKG 499

Query: 242 LAPVIIVTE--NDDPVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVE 293
            AP IIV+   N  P   L  +    + +    Y     L+   +L  L   G+ S+++E
Sbjct: 500 KAPWIIVSPGANIQPAKVLRLKTHGGDYLRIVEYNQSWRLRWEAILRALGTEGINSVMIE 559

Query: 294 GGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI 325
           GGA V    +N      VDS+I+  +   +G GG+
Sbjct: 560 GGATVISELLNPEYVDFVDSLIVTVAPTFLGRGGV 594


>gi|320164473|gb|EFW41372.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Capsaspora
           owczarzaki ATCC 30864]
          Length = 593

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 16/223 (7%)

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
           + R   +R ++ L  A S D  I       + I+G  S    H LRA+   ILVGI TVL
Sbjct: 366 MLRDQAERPYVVLSYAQSLDGCIAAEKGKPLAISGEASLVMTHRLRAEHAGILVGINTVL 425

Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP-----VL 256
           AD+P LT RL  +  ++P  I+LD H +  L +K++    L P II +   D      ++
Sbjct: 426 ADNPSLTVRL--VSGNNPQPIVLDTHLRFPLTAKLLTATPLKPWIITSLTADASREQRLV 483

Query: 257 ALAFRKKNINI-IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN--SRLVDSIIL 313
            L  R   + I    +   L + L  L   G+ S++VEGGA+V  SF+N  S L+D +++
Sbjct: 484 ELGARVIRVPIDPATNSVSLVEALHALYRIGLPSVMVEGGASVIRSFLNHPSHLIDRLVV 543

Query: 314 YRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDVCL 352
             + +++   G  S L    ++         V+ + FG DV L
Sbjct: 544 TIAPVIL--AGTHSTLDGKPQQPVALPQLRNVKYEQFGRDVVL 584


>gi|121714261|ref|XP_001274741.1| riboflavin-specific deaminase [Aspergillus clavatus NRRL 1]
 gi|119402895|gb|EAW13315.1| riboflavin-specific deaminase [Aspergillus clavatus NRRL 1]
          Length = 629

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 106/215 (49%), Gaps = 26/215 (12%)

Query: 137 FLHAYLTRQVEKR--SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
           FL +YL R  EKR   H+TL  A S D+ I +       ++G  +K   H LR++ DAIL
Sbjct: 367 FLDSYLPRHDEKRHLPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAIL 426

Query: 195 VGIGTVLADDPELTCRLNGLQEH-------SPMRIILDP--HFKLSLDSKIIKTAL---- 241
           +G+GT LAD+P L CRL G            P  +++DP   + +  + ++++TA+    
Sbjct: 427 IGVGTALADNPGLNCRLEGAGGFGGLGRMWQPRPVVIDPTGRWPVHPECRMLRTAVEGKG 486

Query: 242 LAPVIIVTENDD--PVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVE 293
            AP +IV+      P   +  +    + +    Y     L+   +L  L   G+ S+++E
Sbjct: 487 KAPWVIVSPGAQIHPQKLMMLKGYGGDFLRIVEYNQNWRLRWEAILRALASEGIKSVMIE 546

Query: 294 GGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI 325
           GG  V    +N   +  +DS+I+  +   +G GG+
Sbjct: 547 GGGTVLSELLNPEYAEFIDSMIVTVAPTYLGRGGV 581


>gi|126179969|ref|YP_001047934.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanoculleus
           marisnigri JR1]
 gi|125862763|gb|ABN57952.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Methanoculleus marisnigri JR1]
          Length = 226

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 11/205 (5%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R  + + IA+S D  I       V I+G     +V  ++A+SDAI+VGIGTVLAD+P LT
Sbjct: 2   RPFVFVNIAMSADGKISTRERRQVRISGNEDYLRVDRIKAESDAIMVGIGTVLADNPSLT 61

Query: 209 CRLNGL--------QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
            +   L        ++ +P+RI++D   +   D+ I+       ++ V++        A 
Sbjct: 62  VKSPELRAERRAAGKDENPIRIVVDGRGRTPPDADILHKGSGKRIVAVSKKAPKKAVEAL 121

Query: 261 RKKNINIIYC-DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
           R++   ++   +  DL+ LL  L  +GV  L+VEGG  +  +     LVD +  +   IV
Sbjct: 122 REQAAVVVGGEETVDLRGLLEELHRQGVRRLMVEGGGTLIWTLFEQGLVDELQAFVGNIV 181

Query: 320 IGEGGIPSPLE-EGYL-EKNFMCVR 342
           IG    P+P +  G+L E++F  +R
Sbjct: 182 IGGKEAPTPTDGAGFLREEDFPRLR 206


>gi|149239544|ref|XP_001525648.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146451141|gb|EDK45397.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 245

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 107/218 (49%), Gaps = 20/218 (9%)

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
           FL +YL  +      +TL  A S D+ I         ++   +K   H LR++ DAILVG
Sbjct: 13  FLESYLPAEKHNGPFVTLTYAQSLDSRIAAKVGVQTKLSHLETKTMTHYLRSKHDAILVG 72

Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS----KIIKTAL-LAPVIIVTE- 250
           + TV ADDP+L CR        P  ++LDP+ K +  +    KI K    LAP+IIV E 
Sbjct: 73  VNTVQADDPKLNCRYGNELRIRP--VVLDPYRKWNFANSQLCKICKDGKGLAPIIIVDEL 130

Query: 251 -------NDDPVL---ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
                  ND+      AL      + +I     + + +   L   G+ +++VEGGA + +
Sbjct: 131 VQLGESKNDEDATELNALGGEYIALPLIEKRMSNWQLIFDKLYKNGLKTIMVEGGATIIN 190

Query: 301 S-FINSRLVDSIILYRSQIVIGEGGIP-SPLEEGYLEK 336
              +N  LVDS+I+  + + +G+ G+  SP +E  L+ 
Sbjct: 191 ELLLNRDLVDSLIITVAPVFLGKEGVEVSPSKEVRLQN 228


>gi|75761016|ref|ZP_00741019.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|74491502|gb|EAO54715.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase  /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
          Length = 148

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 54/91 (59%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ A + 
Sbjct: 55  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMASQN 114

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
           A+ AT YVTLEPCSH+G+       +IE G+
Sbjct: 115 AKDATVYVTLEPCSHFGKHHLVVNXLIEKGV 145


>gi|213616341|ref|ZP_03372167.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 127

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 57/123 (46%), Positives = 75/123 (60%), Gaps = 1/123 (0%)

Query: 41  VIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           ++G G     G PHAEV AL  AG +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RV
Sbjct: 2   IVGEGYHHRAGEPHAEVHALRMAGAKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARV 61

Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
           V  + DP+ +V+GRGL  L Q GI V   +M SE +     +L R      ++ LK+  S
Sbjct: 62  VAAMQDPNPQVAGRGLYRLQQAGIAVSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGAS 121

Query: 160 QDN 162
            D 
Sbjct: 122 VDG 124


>gi|296272024|ref|YP_003654655.1| riboflavin biosynthesis protein RibD [Arcobacter nitrofigilis DSM
           7299]
 gi|296096199|gb|ADG92149.1| riboflavin biosynthesis protein RibD [Arcobacter nitrofigilis DSM
           7299]
          Length = 335

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 103/232 (44%), Gaps = 37/232 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  +  +  LT  NP+V C++VK+G ++        G  HAEV AL+ A  +
Sbjct: 5   DKFYMKLAIDEAWKYQLLTYPNPAVGCVVVKNGEILAIEAHKEAGMSHAEVNALKAAYLK 64

Query: 67  ARGATA---------------------------YVTLEPCSHYGRSPPCAQFIIECGIRR 99
                                            YVTLEPC+H G++P CA  + E   +R
Sbjct: 65  KHANDTLKIKKSSREIHEYLLKNHNNFFNDCEIYVTLEPCNHIGKTPSCANLLKELKPKR 124

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAV 158
           V++  +D + + SG G+Q L    I I    M+ E    L+ ++  +    + +  K+A 
Sbjct: 125 VIIAHEDTNKQASG-GIQTLESVNIDITLDCMKKEAYDLLYPFI--KWNSGTFVFYKMAQ 181

Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
           +      + G     ++  +++  VH LR + D +L+G  TV  D P L  R
Sbjct: 182 T------LNGSIDGKVSSTMAQLYVHTLRDKIDLMLIGGNTVRTDKPTLDAR 227


>gi|71023879|ref|XP_762169.1| hypothetical protein UM06022.1 [Ustilago maydis 521]
 gi|46101653|gb|EAK86886.1| hypothetical protein UM06022.1 [Ustilago maydis 521]
          Length = 253

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 105/227 (46%), Gaps = 20/227 (8%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
           ++R H+TL  A S D  I   G   + ++G  S    H LR   D I+VGIGTVL D+P+
Sbjct: 25  DRRPHVTLTFAQSSDGKIAGPGKTQLALSGPESMRLTHQLRTMHDGIMVGIGTVLNDNPQ 84

Query: 207 LTCRL---NGLQEHSPMRIILDPHFKLSLDSKIIKTALLA----PVIIVTENDDPVLALA 259
           L  RL          P  ++LD   ++ +D K+I+         P+++  ++  P     
Sbjct: 85  LNARLLYAPPPVSRLPRPVVLDSKLRMPVDCKLIRNYAAGIGRQPLVLTLDSAHPDRRTQ 144

Query: 260 FRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI-NSRLVDSIIL 313
                +++I          D   +L  L   G+  L+VEGGA V  S +  S+ +D++++
Sbjct: 145 LELAGVDVIQVHDSSAALLDWTTILQHLYDAGIRRLMVEGGAGVIDSLMQQSQHIDALLV 204

Query: 314 YRSQIVIGEGG------IPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
             + + +G  G      +PS + E + +  +    R +FG D  + +
Sbjct: 205 TIAPLTVGSEGFSFTSKLPS-ISEAHPDAEWSLPSRAWFGKDEVIVW 250


>gi|150402518|ref|YP_001329812.1| bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Methanococcus maripaludis C7]
 gi|150033548|gb|ABR65661.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanococcus maripaludis C7]
          Length = 360

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 144/300 (48%), Gaps = 37/300 (12%)

Query: 88  CAQFIIECGIRRVVVCVD-DPDVRVSGRG-LQWLSQKGIIVDRMMESEGKIFLHAYLTRQ 145
            A  +I   I  V++  D D   RV  +  ++    +GI V+ ++  E   + H  L   
Sbjct: 58  IADDLIAKNIPEVILLTDFDRAGRVYAKNIMEEFQSRGIKVNNLIRKEIIKYSHGDLKDI 117

Query: 146 VEKRSHITLKIAVSQD----------NMIGMAGCGSVP-------ITGFISKNQVHLLRA 188
                +I+ +I ++ D          + +GM   G +        I+G     +VH +R 
Sbjct: 118 ESLYPYISRRITINGDLSDIMVPYVISNVGMTLDGKLATIENDSRISGENDLKRVHEIRK 177

Query: 189 QSDAILVGIGTVLADDPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKII----KTALLA 243
             DAILVGIGTVL DDP LT  ++N   + +P+RI++D   K+SL+++++    KT +  
Sbjct: 178 DVDAILVGIGTVLKDDPRLTVHKINASPKDNPLRIVVDSSLKISLNARVLNKDAKTVIAT 237

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
              I  E ++ +  L  ++  I ++    +  DL+K++  +   G+  +L+EGG  +   
Sbjct: 238 TTPISDEKEEKIRKL--KEMGITVLRAGVQKVDLRKIMNEIYKMGINKILLEGGGTLNWG 295

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLE-EGYLEKNF-MCVR---RDYFGSD--VCLEY 354
                L++ + +Y +  V G    P+ ++ EG+  KN   C +   ++Y+  D  + LEY
Sbjct: 296 MFKENLINEVRVYIAPKVFGGANSPTYVDGEGF--KNVEECTKLELKNYYPLDDGIVLEY 353


>gi|73668036|ref|YP_304051.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanosarcina
           barkeri str. Fusaro]
 gi|72395198|gb|AAZ69471.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Methanosarcina barkeri str. Fusaro]
          Length = 232

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 92/181 (50%), Gaps = 11/181 (6%)

Query: 157 AVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT-------- 208
           A+S D  +       V I+G +   +V  LRAQ+DA++VGIGTVL+DDP LT        
Sbjct: 11  AMSADGKLSTKERKQVRISGKLDFERVDELRAQADAVMVGIGTVLSDDPSLTVKSPKRKA 70

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
            R    +  +P+RII+D   +  LD+ I K      +I V+ +  P   +   +K   +I
Sbjct: 71  ARKAAGKNENPVRIIVDSSARTPLDADIFKKGDGLRIIAVSTS-APAEKIEKLEKKALVI 129

Query: 269 YCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
                  DL++L+ +L   G+  L+VEGGA +    +++ LVD I  +    +IG    P
Sbjct: 130 KAGTEKVDLQELVRVLKKMGINILMVEGGATLNWGMLSAGLVDEIYTFVGNFIIGGATAP 189

Query: 327 S 327
           +
Sbjct: 190 T 190


>gi|323455737|gb|EGB11605.1| hypothetical protein AURANDRAFT_15038 [Aureococcus anophagefferens]
          Length = 161

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 17/173 (9%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC- 209
           H+TLK+AV +   +   G  S   T   S + VH LR  SDA+LVG+ TV  DDP LT  
Sbjct: 1   HVTLKVAVDRFGAVDDLGGKSGRFTSPASLDCVHRLRRGSDAVLVGVSTVARDDPSLTVR 60

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND----DPVLALAFRKKNI 265
           R++ + +  P+R+ILDP+ +   D+ ++   L  P  + +  D    DP +AL    +  
Sbjct: 61  RVDPIDDAQPLRVILDPNGRAPRDAALLTDGL--PTAVFSRGDFGAVDPAVALEPFGELP 118

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
            ++    RD           GV  L+VEGG   A +F+ + LVD  ++ R+ +
Sbjct: 119 TMLDALERD----------HGVAHLMVEGGPFTARAFLAAGLVDRAVIVRAPV 161


>gi|154305619|ref|XP_001553211.1| hypothetical protein BC1G_07624 [Botryotinia fuckeliana B05.10]
 gi|150853143|gb|EDN28335.1| hypothetical protein BC1G_07624 [Botryotinia fuckeliana B05.10]
          Length = 281

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 100/203 (49%), Gaps = 32/203 (15%)

Query: 151 HITLKIAVSQDNMIGM-AGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
           H TL  A S D+ I M  G GS P++G  SK   H LR++ DAIL+G+ T +AD+P L C
Sbjct: 38  HTTLTFATSMDSQITMRPGIGS-PLSGPASKAMTHYLRSKHDAILIGVNTAIADNPSLNC 96

Query: 210 RLNGLQ--------EHSPMRIILDP--HFKLSLDSKIIKTAL----LAPVIIVTENDDPV 255
           R+ G+         +  P  +I+DP   +    DSKI          AP II  + +D  
Sbjct: 97  RIEGVGGYGGGENLKGQPRPVIIDPKGRWNFGEDSKIFGLVKDGRGKAPWIITAQQED-- 154

Query: 256 LALAFRKKNI------NIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSFI- 303
             ++F KK++        I+           + +L  L   G+ SL++EGGA + +  + 
Sbjct: 155 -EISFEKKDLLRATSGKFIHLSPDKEGRFSWQDILEALWKEGIESLMIEGGAGIINDMLA 213

Query: 304 -NSRLVDSIILYRSQIVIGEGGI 325
                +D +I+  + + +G+GG+
Sbjct: 214 EGQVFIDGVIVTIAPVWLGKGGV 236


>gi|261188103|ref|XP_002620468.1| riboflavin-specific deaminase [Ajellomyces dermatitidis SLH14081]
 gi|239593343|gb|EEQ75924.1| riboflavin-specific deaminase [Ajellomyces dermatitidis SLH14081]
 gi|239609085|gb|EEQ86072.1| riboflavin-specific deaminase [Ajellomyces dermatitidis ER-3]
 gi|327356427|gb|EGE85284.1| riboflavin-specific deaminase [Ajellomyces dermatitidis ATCC 18188]
          Length = 666

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 100/215 (46%), Gaps = 26/215 (12%)

Query: 137 FLHAYLTRQVEKRSH--ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
           FL  YL    E R    +TL  A S D  + +       ++G  +K   H LR++ DAIL
Sbjct: 364 FLQPYLPSYEEGRQFPFVTLTYASSMDAKVSLFPGIQTALSGPETKVMTHYLRSRHDAIL 423

Query: 195 VGIGTVLADDPELTCR-------LNGLQEHSPMRIILDPHFKLSLDS--KIIKTALL--- 242
           +G+GT +AD+P L CR           +   P  II+DP  +   D   +++KTA     
Sbjct: 424 IGVGTAIADNPGLNCRLAGAGGFGGLGKMWQPRPIIVDPTGRWPADPECRLLKTAKAGKG 483

Query: 243 -APVIIVTE--NDDPVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVE 293
            AP +IV+   N  P   L  +    + +    Y     L+   +L  L   GVTS+++E
Sbjct: 484 KAPWVIVSPGANIQPAKVLTLKNHGGDYLRIVEYNQSWRLRWEAILRALGTEGVTSVMIE 543

Query: 294 GGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI 325
           GGA V    +N      VDS+I+  +   +G GG+
Sbjct: 544 GGATVISELLNPEYVDFVDSLIITLAPTFLGRGGV 578


>gi|46121465|ref|XP_385287.1| hypothetical protein FG05111.1 [Gibberella zeae PH-1]
          Length = 265

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 104/199 (52%), Gaps = 22/199 (11%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
            R  +TL  A S D+ + +A      ++G  SK   H LR++ DAIL+G+ T+LAD P L
Sbjct: 28  SRPFVTLTFATSLDSSLSLAPGVRTRLSGPDSKAMTHYLRSRHDAILIGVSTLLADYPAL 87

Query: 208 TCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTAL----LAPVIIVTEN--DDPVLALA 259
            CR++G     P  I++DPH +   S   K+++ A     LAP ++   +  D P  +L 
Sbjct: 88  NCRISGATSQ-PRPIVIDPHLRWTPSHTDKVLEVARLGNGLAPFVLTGMDIQDVPAKSLE 146

Query: 260 FRKKN-------INIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL-- 307
             +++          +  + R   D + +   L+   ++S++VEGG  + +S ++SR   
Sbjct: 147 IIEEHGGKYMQVPTTLGSNGRKRFDWRDVFDALLRENLSSVMVEGGGQIINSLLDSRFHN 206

Query: 308 -VDSIILYRSQIVIGEGGI 325
            +DS+I+  +   +G+GG+
Sbjct: 207 DIDSVIVTIAPTWLGQGGV 225


>gi|307083978|ref|ZP_07493091.1| putative cytidine and deoxycytidylate deaminase zinc-binding region
           [Mycobacterium tuberculosis SUMu012]
 gi|308366380|gb|EFP55231.1| putative cytidine and deoxycytidylate deaminase zinc-binding region
           [Mycobacterium tuberculosis SUMu012]
          Length = 132

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 67/125 (53%), Gaps = 3/125 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE 61
           V S D   M  A+  S    G T   P V  +IV  +G ++G G T   G  HAEV AL 
Sbjct: 6   VKSID-EAMGLAIEHSYQVKGTTYPKPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALR 64

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG  A GA   VT+EPC+HYGR+PPC   +IE  +  VV  V DP+  ++G G   LS 
Sbjct: 65  RAGGLAAGAIVVVTMEPCNHYGRTPPCVNALIEARVGTVVYAVADPN-GIAGGGAGRLSA 123

Query: 122 KGIIV 126
            G+ V
Sbjct: 124 AGLQV 128


>gi|21226928|ref|NP_632850.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanosarcina
           mazei Go1]
 gi|20905237|gb|AAM30522.1| conserved protein [Methanosarcina mazei Go1]
          Length = 228

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 12/202 (5%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R  I +  A+S D  +       V I+G +   ++  LRA +DAI+VGIGTVLADDP LT
Sbjct: 3   RPFIFINSAMSADGKLSTKERKQVKISGKLDFERMDELRAHADAIMVGIGTVLADDPSLT 62

Query: 209 --------CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
                    R    +  +P+R+++D   +  L++ I K      +I V+ N  P   +  
Sbjct: 63  VKSPERKAARKAAGKSENPVRVVVDSSARTPLNADIFKKGEGLRIIAVS-NSAPEEKIRM 121

Query: 261 RKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
            ++   +I       DL +L   L   G+ SL+VEGGA +    +++ LVD +  +   +
Sbjct: 122 LEEKALVIKTGAFRVDLTELAAKLKEMGINSLMVEGGATLNWGMLSAGLVDEVYTFVGNL 181

Query: 319 VIGEGGIPSPLE-EGYLEKNFM 339
           +IG    P+  + EG+ E   +
Sbjct: 182 IIGGKTAPTFTDGEGFTENELL 203


>gi|296819637|ref|XP_002849879.1| riboflavin-specific deaminase [Arthroderma otae CBS 113480]
 gi|238840332|gb|EEQ29994.1| riboflavin-specific deaminase [Arthroderma otae CBS 113480]
          Length = 630

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 102/229 (44%), Gaps = 42/229 (18%)

Query: 137 FLHAYLTRQVEKR--------------SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           FL  YL +    R               H+TL  A S D  I         ++G  +K  
Sbjct: 343 FLEPYLPKSSRTRYNANIITNTANPRFPHVTLTYAQSMDGKISTKPGVQTVLSGPETKAM 402

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-------SPMRIILDP--HFKLSLD 233
            H LR++ DAI++G+GT LADDP L CRL G            P  +I+DP   +  S +
Sbjct: 403 THYLRSRHDAIIIGLGTALADDPGLNCRLEGAGGFGGFGTMWQPRPVIIDPTGRWPASPE 462

Query: 234 SKIIKTAL----LAPVIIVTENDD--PVLALAFRKKNINIIYCDCRD--------LKKLL 279
           S+++KTA      AP +IV+   +  P   L  ++   +  Y   R+         + + 
Sbjct: 463 SRLLKTAAEGKGKAPWVIVSPGAELHPEKLLLLKRHGGD--YLRIREYNPHWRLRWEAIF 520

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLV---DSIILYRSQIVIGEGGI 325
             L  +G+ SL++EGG  V    +N   V   DS+I+  +   +G GG+
Sbjct: 521 GALANQGIQSLMIEGGGVVLSELLNPEYVDFIDSVIVTVAPTYVGRGGV 569


>gi|313126634|ref|YP_004036904.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3h)-one reductase
           [Halogeometricum borinquense DSM 11551]
 gi|312292999|gb|ADQ67459.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Halogeometricum borinquense DSM 11551]
          Length = 220

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 12/197 (6%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC- 209
           H+ +  A S D  +       + I+G     +V  +RA SDA+LVG+GTVLADDP LT  
Sbjct: 2   HVVVNAATSADGKLSTRRREQIKISGADDFARVDRVRADSDAVLVGVGTVLADDPHLTVD 61

Query: 210 -------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
                  R +  +E  P R++ D   +   D++I+  A     ++V+E+       A  K
Sbjct: 62  DADYRDERQSDGREPHPARVVADSRARTPTDARILDDAATT-YVLVSESAPADRVSALEK 120

Query: 263 KNINIIYC-DCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
               ++   D R    +    L  RG+  L+VEGG  V  S     LVD + +Y   +V+
Sbjct: 121 TGGTVVTAGDTRVSFPEAFAELEARGIDRLMVEGGGEVIFSLFEDELVDELSVYVGSVVL 180

Query: 321 GEGGIPSPLE-EGYLEK 336
           G    P+  + +G++E 
Sbjct: 181 GGRDAPTLADGDGFVES 197


>gi|48477782|ref|YP_023488.1| hypothetical protein PTO0710 [Picrophilus torridus DSM 9790]
 gi|48430430|gb|AAT43295.1| hypothetical protein PTO0710 [Picrophilus torridus DSM 9790]
          Length = 185

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 89/166 (53%), Gaps = 18/166 (10%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R ++ + +A+S +  I     GS+ I+ +   N+   LR   DA+L+G GTV+ D+PEL 
Sbjct: 2   RPYVIINVAMSLNGRISSIN-GSIKISDYYDWNRTIDLRKSVDAVLIGAGTVMVDNPEL- 59

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
                  +H+  RIILD ++KL+ + K+    +  P  I+T  D  +       KN+ +I
Sbjct: 60  -------KHARSRIILDGNYKLNDNYKVFDGGV--PTYIITGVDVSL-------KNVIVI 103

Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
             +  D+K +L +L   G+ S+LVEGGA V   F  ++L D   +Y
Sbjct: 104 KLNDLDMKNILNVLYEHGIKSILVEGGANVISQFFLNKLYDEFYIY 149


>gi|169836056|ref|ZP_02869244.1| riboflavin biosynthesis protein RibD [candidate division TM7
          single-cell isolate TM7a]
          Length = 66

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/63 (58%), Positives = 46/63 (73%), Gaps = 3/63 (4%)

Query: 31 VACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR---GATAYVTLEPCSHYGRSPP 87
          V  ++V+DG VIG G   Y G PHAEV ALEEA + ++    AT YVTLEPCSHYG++PP
Sbjct: 2  VGAVVVQDGKVIGTGYHKYFGGPHAEVYALEEAAQNSKDLSNATIYVTLEPCSHYGKTPP 61

Query: 88 CAQ 90
          CA+
Sbjct: 62 CAE 64


>gi|219848143|ref|YP_002462576.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chloroflexus
           aggregans DSM 9485]
 gi|219542402|gb|ACL24140.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chloroflexus
           aggregans DSM 9485]
          Length = 222

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 101/218 (46%), Gaps = 19/218 (8%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R  +TL  A + D  +      S  I+   S +  H LRA SDAI+VG+GTVL DDP LT
Sbjct: 3   RPRVTLSFAQTLDGRVAAVDGSSQWISSADSLHFCHSLRAASDAIMVGVGTVLRDDPRLT 62

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKT-ALLAPVIIVTENDDPVLALAFRKKNINI 267
            RL  ++   P+R+I+D   +    + +I+  A    V+  T           R+    I
Sbjct: 63  VRL--VEGCDPVRVIVDSTLRTPPTAAVIRDGAARGTVLACTAAAPSERRTVLRELGATI 120

Query: 268 IYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
           +          DL  LL  L  RG+ S++VEGGA +    + + LVD++ +  + +++G 
Sbjct: 121 LTLPATPDGKVDLVALLASLAERGIASIMVEGGACLITGLLRAHLVDAVAITIAPLILGA 180

Query: 323 GGIPSPLEEGYLEKNFMC-------VRRDYFGSDVCLE 353
           G    P   G L    +        VR   +G DV LE
Sbjct: 181 G----PAAVGDLGITTLAQAIKLGDVRWTTYGVDVVLE 214


>gi|11499589|ref|NP_070831.1| riboflavin-specific deaminase (ribG) [Archaeoglobus fulgidus DSM
           4304]
 gi|6225946|sp|O28272|RIB7_ARCFU RecName: Full=Putative 5-amino-6-(5-phosphoribosylamino)uracil
           reductase; AltName: Full=HTP reductase
 gi|2648530|gb|AAB89247.1| riboflavin-specific deaminase (ribG) [Archaeoglobus fulgidus DSM
           4304]
          Length = 219

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 101/199 (50%), Gaps = 13/199 (6%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R ++ + +A S D  I       + I+       V  LRA+SDAI+VGIGTVLADDP LT
Sbjct: 2   RPYVFVNVAASLDGKISDESRKQLRISCEEDLRIVDRLRAESDAIMVGIGTVLADDPRLT 61

Query: 209 CRLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
            +   L+E         +P+R+++D   ++ L ++I+     A  ++      P   +  
Sbjct: 62  VKSAELREKRQKDGKEPNPLRVVVDSRCRVPLTARILNDE--ARTLVAVSRIAPEEKVRE 119

Query: 261 RKKNINI-IYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
            KK   + ++ + R +L  LL  L  +GV  L+VEGG  +  S I+  LVD I +Y   I
Sbjct: 120 VKKVAEVAVFGEERVELSALLEFLHRKGVRRLMVEGGGTLISSLISQNLVDEIRIYYGPI 179

Query: 319 VIGEGGIPSPLE-EGYLEK 336
            IG    P+  + E +L+K
Sbjct: 180 FIGGRDSPTVCDGESFLKK 198


>gi|254292424|ref|YP_003058447.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Hirschia
           baltica ATCC 49814]
 gi|254040955|gb|ACT57750.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Hirschia
           baltica ATCC 49814]
          Length = 215

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/147 (37%), Positives = 78/147 (53%), Gaps = 9/147 (6%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           +P    D  +M  A+  +R  +G T+ NP+VAC++V    +IG   T  GG PHAE  AL
Sbjct: 4   LPEIEMDKIYMRRAIALARAQLGRTAPNPAVACVLVSGETIIGEAATGDGGRPHAEEIAL 63

Query: 61  EE-AGEEARGATAYVTLEPC-SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           E   G+E   ATAYVTLEPC S       C+  ++  G++RVV+   DP    +  G+  
Sbjct: 64  ESLRGQELSRATAYVTLEPCHSRSNGGAGCSDRLVVSGVKRVVIAQIDPHP-TAKDGIAK 122

Query: 119 LSQKGIIVD-RMMESEGKIFLHAYLTR 144
           L   G+ V+  ++E E      A LTR
Sbjct: 123 LKAAGLDVEVGLLEDEA-----AELTR 144


>gi|288560264|ref|YP_003423750.1| diaminohydroxyphosphoribosylaminopyrimidine reductase RibD
           [Methanobrevibacter ruminantium M1]
 gi|288542974|gb|ADC46858.1| diaminohydroxyphosphoribosylaminopyrimidine reductase RibD
           [Methanobrevibacter ruminantium M1]
          Length = 226

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 99/184 (53%), Gaps = 12/184 (6%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           + ++ L  A++ D  I     GS  I+G     +VH +R + D I+VGIGTVLADDP LT
Sbjct: 2   KPYVILNAAMTLDGKIA-TKTGSSEISGKEDLERVHEIRKKVDGIMVGIGTVLADDPRLT 60

Query: 209 C-RLNGLQEHSPMRIILDPHFKLSLDSKIIKT---ALLAPVIIVTENDDPVLALAFRK-- 262
             ++N  +E +P+RI++D   +  L+ +I+      ++A   I  E ++     A ++  
Sbjct: 61  VHKINARKEDNPIRIVVDNKARTPLNFRILNDDAETIIAVSSICDERNENCDEEAVKRAK 120

Query: 263 ---KNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
              K +N+ Y   +  DL + +  L   G+ S+++EGG+ +  S I   L+D + +  + 
Sbjct: 121 ELEKRVNVFYSTGETVDLVEFMEYLYDYGIKSIMLEGGSTLNFSMIRDGLIDEVKICIAP 180

Query: 318 IVIG 321
           +++G
Sbjct: 181 MIVG 184


>gi|261403330|ref|YP_003247554.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanocaldococcus vulcanius M7]
 gi|261370323|gb|ACX73072.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanocaldococcus vulcanius M7]
          Length = 219

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 101/184 (54%), Gaps = 14/184 (7%)

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +VH +RA+ D I+VGIGTVL DDP LT       + +P+RI++D   ++ L+++++ +  
Sbjct: 34  RVHKIRAKVDGIMVGIGTVLKDDPRLTVH-KIKSDRNPVRIVVDSKLRVPLNARVLNSD- 91

Query: 242 LAPVIIVTEND----DPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGG 295
            A  II T  D            +++ I+I+ C  +  DL+KL+ +L  +G+ ++L+EGG
Sbjct: 92  -AKTIIATTEDLDEEKQKKIKILKERGIDIVMCGEEKVDLRKLMNVLYKKGIKTILLEGG 150

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGYL--EKNFMCVRRDYF--GSDV 350
             +        LVD + +Y +  + G    P+ ++ EG+   E++     ++++  G  +
Sbjct: 151 GTLNWGMFKEGLVDEVSVYIAPKIFGGKNAPTYVDGEGFKSEEESVKLELKNFYRLGEGI 210

Query: 351 CLEY 354
            LE+
Sbjct: 211 VLEF 214


>gi|257388460|ref|YP_003178233.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halomicrobium
           mukohataei DSM 12286]
 gi|257170767|gb|ACV48526.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p
           yrimidine1-reductase [Halomicrobium mukohataei DSM
           12286]
          Length = 223

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 96/196 (48%), Gaps = 10/196 (5%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT-- 208
           H+ +  A+S D  +       + I+G    ++V  LRA+SDA++VG+GTVLADDP LT  
Sbjct: 2   HVVVNAAMSADGKLSTRRREQIEISGTRDFDRVDELRAESDAVMVGVGTVLADDPSLTLD 61

Query: 209 ------CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN-DDPVLALAFR 261
                  R +  +  +P R++ D   +   D++++  A L  +++      D V  +   
Sbjct: 62  DPERQRAREDRGEPANPARVVADSQVRTPPDARVLDEAALTYLLVSQAALTDFVTQMEDV 121

Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
              + +   D  DL   L  L G G+  L+VEGG  +  S     LVD + ++    VIG
Sbjct: 122 GATVIVAGEDRVDLVTALAKLEGDGIDQLMVEGGGELIFSLFEEGLVDELSVFVGSTVIG 181

Query: 322 EGGIPSPLE-EGYLEK 336
               P+  + EG++E+
Sbjct: 182 GRDAPTLADGEGFVEE 197


>gi|186681940|ref|YP_001865136.1| CMP/dCMP deaminase, zinc-binding [Nostoc punctiforme PCC 73102]
 gi|186464392|gb|ACC80193.1| CMP/dCMP deaminase, zinc-binding [Nostoc punctiforme PCC 73102]
          Length = 143

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/138 (39%), Positives = 72/138 (52%), Gaps = 3/138 (2%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGEEAR 68
           FM AAL  SR  +     NP V C+ V    ++ +G T   G  HAE  AL+   G+   
Sbjct: 6   FMLAALAQSRKALPECLPNPPVGCVNVDVQEIVAQGYTQVPGKHHAEADALKRIQGKGFN 65

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIE-CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
               YVTLEPCS +GR+P CA  I E C I  + V + DPD R +G+GL  L + G  V 
Sbjct: 66  FLKMYVTLEPCSFHGRTPACALAIAEDCRIHEIYVSILDPDPRNNGQGLDILRKAGKTVY 125

Query: 128 -RMMESEGKIFLHAYLTR 144
             +  +E   FL+ YL R
Sbjct: 126 VGLCANEVNTFLNQYLLR 143


>gi|212716410|ref|ZP_03324538.1| hypothetical protein BIFCAT_01333 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660663|gb|EEB21238.1| hypothetical protein BIFCAT_01333 [Bifidobacterium catenulatum DSM
           16992]
          Length = 310

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 75/143 (52%), Gaps = 9/143 (6%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE---EAGE 65
           ++M+ AL  +    G  + NP V  ++V+DG ++  G       PHAE  A +   E G 
Sbjct: 28  KYMTQALELAHKGAGWVNPNPLVGTVVVRDGEILAAGYHDRYRGPHAERMAFDYADEHGV 87

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +  GAT   TLEPC H G  P C   I+  GI RVVV   DP+  V+G+GL  L + G+ 
Sbjct: 88  DMHGATVIDTLEPCCHVGSQPACTDLILSHGITRVVVGSIDPNPIVAGKGLCILEENGVE 147

Query: 125 IVDRMMESE----GKIFLHAYLT 143
           +V  +M +E     + F H Y+T
Sbjct: 148 VVYDVMRAECDAINRHFFH-YIT 169


>gi|70985705|ref|XP_748358.1| riboflavin biosynthesis protein Rib7 [Aspergillus fumigatus Af293]
 gi|66845987|gb|EAL86320.1| riboflavin biosynthesis protein Rib7, putative [Aspergillus
           fumigatus Af293]
          Length = 280

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 98/199 (49%), Gaps = 26/199 (13%)

Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL- 211
           TL  A S D+ + ++      ++G  SK   H LR++ DAIL+G+GT +ADDP L CR+ 
Sbjct: 42  TLTFATSLDSALALSPGAKTALSGPQSKAMTHYLRSRHDAILIGVGTAVADDPGLNCRIA 101

Query: 212 ------NGLQEHSPMRIILDP--HFKLSLDSKIIKTAL----LAPVIIVTENDDPVLALA 259
                     E  P  I++DP   +  + +SKI+  A      AP I+      P    A
Sbjct: 102 GVGGYGGQGLEGQPRPIVIDPSARWDFTENSKILTLAREGRGRAPFILTGTQSIPAEKKA 161

Query: 260 FRKK------NINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN---SR 306
             ++      +++++  +      D   LL  L   G+ S+++EGGA + +S +      
Sbjct: 162 LLERHGGKFISLDVVTSETEERRMDWTTLLKALSKEGLKSVMIEGGATIINSLLEPSYQN 221

Query: 307 LVDSIILYRSQIVIGEGGI 325
           L+DS+I+  +   +G+GG+
Sbjct: 222 LIDSVIVTIAPTWLGQGGV 240


>gi|114570085|ref|YP_756765.1| deaminase-reductase domain-containing protein [Maricaulis maris
           MCS10]
 gi|114340547|gb|ABI65827.1| bifunctional deaminase-reductase domain protein [Maricaulis maris
           MCS10]
          Length = 191

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 90/179 (50%), Gaps = 28/179 (15%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R  +TLK+A S D  I +A   S  ITG  S+  VH +RA  DA+L GIGT+LADDP LT
Sbjct: 6   RPLVTLKLATSLDGKIALANGVSQWITGPESRAVVHRMRAAHDAVLTGIGTILADDPRLT 65

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
            R  G  E  P  II+D                       ++   P  A  F+  + ++ 
Sbjct: 66  ARPEGGCERQPDVIIMD-----------------------SQGRTPATAQVFKGGDRSVT 102

Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
               RDL++ +     +G   +++E GA +A + I + LVD I  +R+ +V+G  G+P+
Sbjct: 103 LIPHRDLERAM-----KGCERVMIEAGARIAAAAIQAGLVDRIEWFRAPMVLGGDGLPA 156


>gi|284162163|ref|YP_003400786.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
           pyrimidine1-reductase [Archaeoglobus profundus DSM 5631]
 gi|284012160|gb|ADB58113.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
           pyrimidine1-reductase [Archaeoglobus profundus DSM 5631]
          Length = 222

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 87/158 (55%), Gaps = 13/158 (8%)

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTC--------RLNGLQEHSPMRIILDPHFKLSL 232
            +V  LRA+SDAI+VGIGTVL+D+P+LT         RL   ++ +P+R+++D   ++ L
Sbjct: 34  KRVDELRAKSDAIMVGIGTVLSDNPKLTVKSEELRKRRLEEGRDANPIRVVVDSKCRIPL 93

Query: 233 DSKIIKTALLAPVIIVTE---NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
           D+K++  +  A  I+      N + V  L     ++ +   D  DLK L+  L   GV  
Sbjct: 94  DAKVLDES--AKTIVAVSRIANSEKVNTLRRMGVDVFVAGDDKVDLKALVEYLYKIGVRV 151

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           L+VEGGA +  + +   LVD I +Y   ++IG    P+
Sbjct: 152 LMVEGGATLNWAMLREGLVDEIYVYYGNMIIGGSKAPT 189


>gi|32266337|ref|NP_860369.1| riboflavin biosynthesis protein RibD [Helicobacter hepaticus ATCC
           51449]
 gi|32262387|gb|AAP77435.1| riboflavin biosynthesis protein RibD [Helicobacter hepaticus ATCC
           51449]
          Length = 348

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 103/241 (42%), Gaps = 37/241 (15%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
           M ++S D  F+      +     L   NPSV  L+V K G ++ + V    G PHAEV A
Sbjct: 1   MFLNSSDELFLHYCCSLAWESQTLALPNPSVGALVVDKYGQILSQAVHKVAGSPHAEVLA 60

Query: 60  LEEAGEEARG---------------------------ATAYVTLEPCSHYGRSPPCAQFI 92
           ++ A     G                            T YV+LEPC+HYG++PPC+Q +
Sbjct: 61  IQAAYHTLSGDDEIVKLHKSKDIHTYLLAHHNGLFKECTLYVSLEPCNHYGKTPPCSQLL 120

Query: 93  IECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME-SEGKIFLHAYLTRQVEKRS- 150
              G  RV +  +D     +G G  +LSQ GI V  +   +   +  H  +  ++ +++ 
Sbjct: 121 SSLGFSRVCIATNDTHALAAG-GANYLSQVGINVCYIQSPTLQHLATHLLMPFEILRKNG 179

Query: 151 -HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
                K+A+  D            I+  IS+   H  R+  D I V   T+  D+P+L  
Sbjct: 180 RFALFKLALRLDGSYTQG-----RISSDISRQFTHNQRSVCDWICVSGNTLRNDNPQLNA 234

Query: 210 R 210
           R
Sbjct: 235 R 235


>gi|307324661|ref|ZP_07603867.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptomyces
           violaceusniger Tu 4113]
 gi|306889543|gb|EFN20523.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptomyces
           violaceusniger Tu 4113]
          Length = 238

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 96/200 (48%), Gaps = 14/200 (7%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           V+ R  +  K A + D  I  A   S  IT   S+ +VH LRA   A +VG GT  AD+P
Sbjct: 15  VDGRPFVVYKYAATLDGRIAAADSTSQWITSAESRAEVHALRAACQATVVGSGTQQADNP 74

Query: 206 ELTCR---------LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
            L  R         +    +  P R+I+D + +   D++++  A  AP +I   +D    
Sbjct: 75  HLAVRSVKDDPKLKVAVPVDQQPWRVIVDTNARTPADARVLDDA--APTMIAVADDADAS 132

Query: 257 ALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
            L      + +       D++ LL  L  RGV  + +EGG  +A SF+++ LVD I+ Y 
Sbjct: 133 HLEGVATVVRLPRAKVGLDVEALLRALHRRGVRGMFLEGGPTLAASFVSAGLVDRIVAYI 192

Query: 316 SQIVIGEGGIPSPLEEGYLE 335
           +  ++G G   S LE G +E
Sbjct: 193 APALLGRG--KSGLEGGTIE 210


>gi|302895311|ref|XP_003046536.1| hypothetical protein NECHADRAFT_34089 [Nectria haematococca mpVI
           77-13-4]
 gi|256727463|gb|EEU40823.1| hypothetical protein NECHADRAFT_34089 [Nectria haematococca mpVI
           77-13-4]
          Length = 268

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 100/208 (48%), Gaps = 23/208 (11%)

Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199
           + L +    R  +TL  A S D+ + +A      ++G  SK   H LR++  AIL+G+ T
Sbjct: 22  STLAQGTPSRPFVTLTFATSLDSSLSLAPGVRTRLSGPGSKAMTHYLRSRHAAILIGVST 81

Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS--KIIKTAL----LAPVIIV---TE 250
           +LAD P L CR+ G     P  II+DPH +   D   K+++ A     LAP ++    +E
Sbjct: 82  LLADSPALNCRIAGAARQ-PRPIIIDPHLRWVPDPTDKVLEVARLGTGLAPFVLTGVGSE 140

Query: 251 NDDPVLALAFRKKNINIIYCDCR----------DLKKLLTILVGRGVTSLLVEGGAAVAH 300
           +     A    +     I+              D + +   L+   +TS++VEGG  + +
Sbjct: 141 SLPAASAALLEQHGGKYIHVPATSSGPGSRMRFDWRAVFDALLREHLTSVMVEGGGQIIN 200

Query: 301 SFINSR---LVDSIILYRSQIVIGEGGI 325
           S +N     ++DS+I+  +   +G+GG+
Sbjct: 201 SLLNPTFHDMIDSVIVTIAPTWLGQGGV 228


>gi|288818933|ref|YP_003433281.1| riboflavin specific deaminase [Hydrogenobacter thermophilus TK-6]
 gi|288788333|dbj|BAI70080.1| riboflavin specific deaminase [Hydrogenobacter thermophilus TK-6]
 gi|308752520|gb|ADO46003.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p
           yrimidine1-reductase [Hydrogenobacter thermophilus TK-6]
          Length = 220

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 7/148 (4%)

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           +H +RA+ D I+VG  TV  D+P LT R   +Q  +P+RII      + LD+ I      
Sbjct: 41  LHEIRAKVDGIMVGCETVRTDNPSLTVRY--VQGKNPVRIIPCSTANVPLDANIFSKD-- 96

Query: 243 APVIIVTEN---DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           AP II+T     +D V  +      + ++  D  D  KL+ +LV RG+ SL+VEGGA++ 
Sbjct: 97  APTIIITTKRAPEDKVEKIKEVGAEVWVVGEDLVDFDKLMPMLVERGIKSLMVEGGASIN 156

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS 327
             FI    VD I L    +++G   +P+
Sbjct: 157 WEFIKRGFVDEIRLIHLPVIVGGENVPT 184


>gi|78776878|ref|YP_393193.1| riboflavin biosynthesis protein RibD [Sulfurimonas denitrificans
           DSM 1251]
 gi|78497418|gb|ABB43958.1| Riboflavin biosynthesis protein RibD [Sulfurimonas denitrificans
           DSM 1251]
          Length = 336

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 106/231 (45%), Gaps = 37/231 (16%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA----- 63
           +M  AL  +  + GLT  NP+V C+I+ K G ++        G PHAEV+AL+ A     
Sbjct: 8   YMRLALNEAWKYQGLTYPNPAVGCVIISKSGEILALEAHKRAGLPHAEVEALKSAYIVLS 67

Query: 64  ----------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                                  +  + AT Y TLEPCSH G++P CA  I +  I++++
Sbjct: 68  GDKKILELTESAQIHNYLLENHNDYFKDATIYTTLEPCSHIGKTPSCATLISKLNIKKLI 127

Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
           V   D +   SG G + ++  G+ +   +M+ E    L  +   Q +K   +  K A   
Sbjct: 128 VGSLDSNEIASG-GNKVVNDAGVEIKYGVMQKECDELLLPFWLWQKDK--FVFFKWAQRL 184

Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
           +  +     G + I+   S+ +VH +R   D +++G  +V  D P L  RL
Sbjct: 185 NGTVD----GGI-ISSSKSRTKVHAMRDVCDLLVIGGNSVRVDRPTLDARL 230


>gi|119473533|ref|XP_001258642.1| riboflavin biosynthesis protein Rib7, putative [Neosartorya
           fischeri NRRL 181]
 gi|119406795|gb|EAW16745.1| riboflavin biosynthesis protein Rib7, putative [Neosartorya
           fischeri NRRL 181]
          Length = 280

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 108/233 (46%), Gaps = 33/233 (14%)

Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL- 211
           TL  A S D+ + ++      ++G  SK   H LR++ DAIL+G+GT +ADDP L CR+ 
Sbjct: 42  TLTFATSLDSALALSPGAKTVLSGPQSKAMTHYLRSRHDAILIGVGTAVADDPGLNCRIA 101

Query: 212 ------NGLQEHSPMRIILDP--HFKLSLDSKIIKTAL----LAPVIIVTENDDPVLALA 259
                     E  P  I++DP   +  +  SKI+  A      AP II      P    A
Sbjct: 102 GVGGYGGQGLEGQPRPIVIDPSARWDFTESSKILTLAWEGRGRAPFIITGAQAVPAEKKA 161

Query: 260 FRKK------NINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN---SR 306
             ++      +++++  +      D   LL  L   G+ S+++EGGA + +S +      
Sbjct: 162 LLERHGGKFISLDVVTSETGEHRMDWTTLLKALSKEGLKSVMIEGGATIINSLLEPSYQN 221

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-------FMCVRRDYFGSDVCL 352
           L+DS+I+  +   +G+GG+    +  + E+           V+   FG DV L
Sbjct: 222 LIDSVIVTIAPTWLGQGGVVVSPKRRFNEQGVAIPASRLTDVKWYPFGEDVVL 274


>gi|52550255|gb|AAU84104.1| pyrimidine reductase [uncultured archaeon GZfos37B2]
          Length = 225

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 12/190 (6%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R ++ +  A+S D  I       +PI+G +   +V  L+  +DAI+VGIGTVL D+P LT
Sbjct: 2   RPYVFINAAMSADGKISAYTRKQIPISGEVDFRRVDRLKYGADAIMVGIGTVLTDNPSLT 61

Query: 209 CRLNGLQ--------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
            +   L+        + +P+RI+ D   +  +D+ I+       +I+V+E+   V     
Sbjct: 62  VKSEELRKERRDLGTDENPIRIVADSLARTPVDADILMKGAGRRIILVSESAPGVRLDRL 121

Query: 261 RKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
           R+    I+       DL   L  L   GV  ++VEGG ++  S +   LVD++ +Y   +
Sbjct: 122 REAGAEIVVAGEHRIDLASALGRLYEMGVRRMMVEGGGSLNWSLLYQGLVDAVYVYVGNM 181

Query: 319 VIGEGGIPSP 328
           ++  GG  SP
Sbjct: 182 IL--GGESSP 189


>gi|256810581|ref|YP_003127950.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanocaldococcus fervens AG86]
 gi|256793781|gb|ACV24450.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanocaldococcus fervens AG86]
          Length = 219

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 96/188 (51%), Gaps = 22/188 (11%)

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +VH +RA  D I+VGIGTVL DDP LT       + +P+RI++D   ++ L+++++    
Sbjct: 35  RVHKIRANVDGIMVGIGTVLKDDPRLTIH-KIKSDKNPVRIVVDSKLRIPLNARVLNKD- 92

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY------CDCR----DLKKLLTILVGRGVTSLL 291
            A  II T  D        ++K INI+         C     DLKKL+ IL  +G+ S+L
Sbjct: 93  -AKTIIATTEDTD----EEKEKKINILKEMGVDVVKCGKGRVDLKKLMEILYNKGIKSIL 147

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR---RDYF-- 346
           +EGG  +        LVD + +Y +  + G    P+ ++    +    CV+   ++++  
Sbjct: 148 LEGGGTLNWGMFKEGLVDEVSVYIAPKIFGGKEAPTYVDGKGFKTADECVKLELKNFYRL 207

Query: 347 GSDVCLEY 354
           G  + LE+
Sbjct: 208 GEGIVLEF 215


>gi|159128508|gb|EDP53623.1| riboflavin biosynthesis protein Rib7, putative [Aspergillus
           fumigatus A1163]
          Length = 280

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 98/199 (49%), Gaps = 26/199 (13%)

Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL- 211
           TL  A S D+ + ++      ++G  SK   H LR++ DAIL+G+GT +ADDP L CR+ 
Sbjct: 42  TLTFATSLDSALALSPGAKTVLSGPQSKAMTHYLRSRHDAILIGVGTAVADDPGLNCRIA 101

Query: 212 ------NGLQEHSPMRIILDP--HFKLSLDSKIIKTAL----LAPVIIVTENDDPVLALA 259
                     +  P  I++DP   +  + +SKI+  A      AP I+      P    A
Sbjct: 102 GVGGYGGQGLQGQPRPIVIDPSARWDFTENSKILTLAREGRGRAPFILTGTQSIPAEKKA 161

Query: 260 FRKK------NINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN---SR 306
             ++      +++++  +      D   LL  L   G+ S+++EGGA + +S +      
Sbjct: 162 LLERHGGKFISLDVVTSETEERRMDWTTLLKALSKEGLKSVMIEGGATIINSLLEPSYQN 221

Query: 307 LVDSIILYRSQIVIGEGGI 325
           L+DS+I+  +   +G+GG+
Sbjct: 222 LIDSVIVTIAPTWLGQGGV 240


>gi|325959850|ref|YP_004291316.1| Riboflavin-specific deaminase domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325331282|gb|ADZ10344.1| Riboflavin-specific deaminase domain protein [Methanobacterium sp.
           AL-21]
          Length = 226

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 95/167 (56%), Gaps = 6/167 (3%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           ++ +  L  A++ D  I     GS  I+G     +VH LR + DAI+VGI TVLADDP L
Sbjct: 7   EKPYTILNSAMTLDGKIA-TKTGSSEISGQEDLVRVHELRMEVDAIMVGINTVLADDPRL 65

Query: 208 TC-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
           T  ++   +  +P+RI++D   +  L+ +I+ +     ++ VT+  DPV      K+ ++
Sbjct: 66  TVHKIPSSKSDNPLRIVVDSRARTPLNFRILNSD-AKTLLAVTQAADPVKVNKL-KQLVD 123

Query: 267 IIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311
           ++ C  +  DLK L+  L   G+ +L++EGG+ + +S ++  LVD +
Sbjct: 124 VVVCGEKHVDLKNLMKHLYELGIKTLMLEGGSTLNYSMLSEGLVDEV 170


>gi|34558306|ref|NP_908121.1| putative riboflavin-specific deaminase [Wolinella succinogenes DSM
           1740]
 gi|34484025|emb|CAE11021.1| PUTATIVE RIBOFLAVIN-SPECIFIC DEAMINASE EC 3.5.4 [Wolinella
           succinogenes]
          Length = 344

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 106/232 (45%), Gaps = 38/232 (16%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +M  AL+ +  + GLT  NP+V  L++ + G ++        G PHAEV AL+E      
Sbjct: 13  YMELALQEAWKYQGLTLPNPAVGALLLGEHGEILSIAAHQRAGSPHAEVLALQEGYARLS 72

Query: 69  GA---------------------------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           G                            T YVTLEPC+HYG++PPC++ +     + V+
Sbjct: 73  GNADILALHDSSQIHDYLLAHSQGIFRHCTLYVTLEPCNHYGQTPPCSELLARLKPKSVI 132

Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG--KIFLHAYLTRQVEKRSHITLKIAVS 159
           +   DP+ + SG G+  L + GI V   ++ E   K+ L      +++K+ +        
Sbjct: 133 IGKRDPNPKASG-GIDRLKEAGIAVHTGIKEEACHKLLLP---FERLQKQGYFRFFKWAQ 188

Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
           + N  G    G +  +   S+  VH LR + D +++   T  AD+P L  RL
Sbjct: 189 RLN--GTLSPGII--SSSSSRAHVHALRDRIDLLVISGKTARADNPWLDARL 236


>gi|119025436|ref|YP_909281.1| riboflavin biosynthesis protein RibD [Bifidobacterium adolescentis
           ATCC 15703]
 gi|118765020|dbj|BAF39199.1| riboflavin biosynthesis protein RibD [Bifidobacterium adolescentis
           ATCC 15703]
          Length = 317

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 73/141 (51%), Gaps = 9/141 (6%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
           M+ AL  +R   G    NP V  ++V+DG V+  G       PHAE  A + A   G + 
Sbjct: 49  MAQALELARKGAGWVDPNPLVGAVVVRDGEVLATGYHDRYRGPHAERMAFDYADAHGIDL 108

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
            GAT   TLEPC H G  P C   I+  GI RVVV   DP+  V+G+GL+ L + G+ +V
Sbjct: 109 TGATVIDTLEPCCHVGSQPACTALILAHGIARVVVGSVDPNPIVAGKGLRILEEAGVEVV 168

Query: 127 DRMMESE----GKIFLHAYLT 143
             +M  E     + F H Y+T
Sbjct: 169 RDVMREECDAINRHFFH-YIT 188


>gi|224419196|ref|ZP_03657202.1| putative riboflavin-specific deaminase [Helicobacter canadensis MIT
           98-5491]
 gi|253828126|ref|ZP_04871011.1| Riboflavin biosynthesis protein RibD [Helicobacter canadensis MIT
           98-5491]
 gi|313142700|ref|ZP_07804893.1| riboflavin biosynthesis protein RibD [Helicobacter canadensis MIT
           98-5491]
 gi|253511532|gb|EES90191.1| Riboflavin biosynthesis protein RibD [Helicobacter canadensis MIT
           98-5491]
 gi|313131731|gb|EFR49348.1| riboflavin biosynthesis protein RibD [Helicobacter canadensis MIT
           98-5491]
          Length = 346

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 101/227 (44%), Gaps = 43/227 (18%)

Query: 25  TSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA-------------------- 63
           T  NP+V  LI+  +G ++        G PHAEV AL+EA                    
Sbjct: 22  TLPNPAVGALILDHNGRILALQAHQEAGKPHAEVLALKEAYFNLTQDSNILPLEQSIQIH 81

Query: 64  ---GEEAR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
               ++A      AT YVTLEPC H G++P CA  +   GI+++++   DP+ +  G G 
Sbjct: 82  EYLKQKAHSLFHNATLYVTLEPCMHEGKTPSCAALLESLGIKKLIIGTKDPNPKAQG-GA 140

Query: 117 QWLSQKGIIVDRMMESE--------GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG 168
           ++L Q+G  + +  E++            L  + + Q +K + I  K A   +  I    
Sbjct: 141 EYLQQRGCKIIKAWENKELQKSSILANDLLLPFNSLQ-KKGNFILFKYACRLNGSINGGQ 199

Query: 169 CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215
             S     F+     H LR + D +++   +VL D+P L  R N LQ
Sbjct: 200 ISSKETQIFM-----HNLRCKLDELVISGKSVLIDNPILDSRFNSLQ 241


>gi|325126599|gb|ADY85929.1| RibD protein [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 107

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 1/102 (0%)

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E+   +T YVTLEPC HYG+ PPC Q II+ GI+RVVV   DP   V+G+G+  L Q G+
Sbjct: 4   EQLSNSTIYVTLEPCCHYGKQPPCTQLIIDSGIKRVVVGATDPHSLVTGKGIAALRQAGL 63

Query: 125 IVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG 165
            V   ++  E       Y         ++TLK A++ D+M+ 
Sbjct: 64  EVSTGLLAKEASQLNDHYNYFYQTGLPYVTLKQAMTLDHMLA 105


>gi|254459001|ref|ZP_05072424.1| riboflavin biosynthesis protein RibD [Campylobacterales bacterium
           GD 1]
 gi|207084272|gb|EDZ61561.1| riboflavin biosynthesis protein RibD [Campylobacterales bacterium
           GD 1]
          Length = 336

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 102/236 (43%), Gaps = 38/236 (16%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62
           SSF   F++ AL+ +  + GLT  NP+V C IV     ++        G PHAEV AL  
Sbjct: 5   SSF---FINLALKEAWKYQGLTYPNPAVGCTIVSPKNELLSVEAHKKSGLPHAEVMALRT 61

Query: 63  AGEEA---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIEC 95
           A  +                            R  + Y TLEPCSH G++P CA  I   
Sbjct: 62  AYFKLTNDSKILELTSSSEIHTFLLNNHNNCFRDISLYTTLEPCSHIGKTPSCASLISAL 121

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
           GI++V V  +D +   SG G + L + G+ V   +  +    L A   +  E +  +  K
Sbjct: 122 GIKKVFVGFNDINEEASG-GTEILKKSGVDVQSSILEKKAYDLIAPFNKWKEDK-FVFFK 179

Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
            A     + G    G+  I+   S+  VH +R   D +++G  TV  D P L  RL
Sbjct: 180 WA---QRLNGSTDAGT--ISSIESRINVHKMRNVCDLLVIGGNTVREDRPTLDARL 230


>gi|322371685|ref|ZP_08046228.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haladaptatus
           paucihalophilus DX253]
 gi|320548570|gb|EFW90241.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haladaptatus
           paucihalophilus DX253]
          Length = 210

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 98/189 (51%), Gaps = 8/189 (4%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
           H+ +  A+S D  +       V I+G    ++V  LR +SDAI+VG+GTVLADDP LT  
Sbjct: 2   HVVVNAAMSADGKLSSRQREQVAISGADDFDRVDDLRVESDAIVVGVGTVLADDPSLTAD 61

Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270
               +  +P+R++ D   +  LD++++       ++ V E+       A R+   +++  
Sbjct: 62  ----EGVNPVRVVADSKARTPLDARVLDDR-ADTLVFVAESAPNRNVRALREAGADVVVA 116

Query: 271 -DCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
            + R  L +  + L  RG   ++VEGG  +  S  +  LVD + LY   +VIG    P+ 
Sbjct: 117 GNGRVALGQAFSELESRGTKRVMVEGGGELIFSLFDGGLVDELRLYVGSVVIGGRDAPTL 176

Query: 329 LE-EGYLEK 336
            + +G++E+
Sbjct: 177 ADGDGFVER 185


>gi|289807868|ref|ZP_06538497.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
          deaminase/5-amino-6-(5-phosphoribosylamino)uracil
          reductase [Salmonella enterica subsp. enterica serovar
          Typhi str. AG3]
          Length = 111

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/87 (50%), Positives = 59/87 (67%)

Query: 7  DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
          D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG +
Sbjct: 3  DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGAK 62

Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFII 93
          A+GATAYVTLEPCSH+GR+PPC   +I
Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALI 89


>gi|299142094|ref|ZP_07035228.1| riboflavin biosynthesis protein RibD [Prevotella oris C735]
 gi|298576556|gb|EFI48428.1| riboflavin biosynthesis protein RibD [Prevotella oris C735]
          Length = 122

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 58/114 (50%), Gaps = 4/114 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M   L+ +         NP V  +IV    +IG G     G  HAEV A      E   
Sbjct: 6   YMKRCLQLAENGRQNAKPNPMVGAVIVAHDRIIGEGYHVRCGEGHAEVNAFASVRPEDEK 65

Query: 70  ----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
               AT YV+LEPCSHYG++PPCA  II  GI+R V    DP  +V GRG+Q +
Sbjct: 66  LLPEATIYVSLEPCSHYGKTPPCADLIISKGIKRCVCGCVDPFAKVQGRGIQRM 119


>gi|84489977|ref|YP_448209.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanosphaera
           stadtmanae DSM 3091]
 gi|84373296|gb|ABC57566.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Methanosphaera stadtmanae DSM 3091]
          Length = 215

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 100/194 (51%), Gaps = 16/194 (8%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           + ++ L  A++ D  I      S+ I+G     +VH LR + D I+VGI TVL D+P+LT
Sbjct: 2   KPYVLLNSAMTVDGKIATNN-SSMKISGKNDLIRVHTLRKEYDGIMVGINTVLIDNPKLT 60

Query: 209 C-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
             ++N  +  +P RII+D   ++ LDSK++     A  I++  +     ++   K+  N+
Sbjct: 61  IHKINCKKSENPTRIIVDSSARIPLDSKVLNDD--AKTIVIVSSKANKASVELLKEKCNV 118

Query: 268 IYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           I C  +  +LK  L  L   G+ S+L+EGG+ +  S    +L+D +      I IG    
Sbjct: 119 IICGSKQVNLKLALDKLYSLGIKSILLEGGSTLNFSMFKEKLIDEV-----SICIG---- 169

Query: 326 PSPLEEGYLEKNFM 339
            S +  GY  K F+
Sbjct: 170 -SKILGGYDSKTFV 182


>gi|269796889|ref|YP_003316344.1| riboflavin biosynthesis protein RibD [Sanguibacter keddieii DSM
           10542]
 gi|269099074|gb|ACZ23510.1| riboflavin biosynthesis protein RibD [Sanguibacter keddieii DSM
           10542]
          Length = 372

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 129/326 (39%), Gaps = 46/326 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           MS AL  +R      S  P   C+++  DG V+G   T      HA  QAL EAG  A+G
Sbjct: 23  MSRALELAREDRLAASLGPRGGCVLLGADGTVLGEARTDRVARVHATAQALAEAGHRAQG 82

Query: 70  ATAYVTLEPC------SHYGRSP----PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           ATA VTLEPC         G SP    PCAQ +++ G+RRVVV   DPD   SG      
Sbjct: 83  ATAVVTLEPCCLGGDARATGPSPLPHGPCAQALVDAGVRRVVVAHLDPDPGTSG------ 136

Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
              G  + R    E      A     +      T  +   +  +  +   G    +    
Sbjct: 137 ---GAALLRGAGVEVVAASAAAADEALSLNRAWTFGVQAGRPLVTWVVEGGG---SAGGP 190

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
              +  LRAQ D ++V    VLA D  L     G   H   R  L               
Sbjct: 191 NPDLDRLRAQVDTLVVSTWAVLAHDVSLAAL--GPDGHPAARQPLR-------------- 234

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
                V++ T   DP L + F      + +   RD    L  +   G   +L+ GG A+A
Sbjct: 235 -----VVVGTRELDPGLPI-FDGPGRTLHFA-TRDPALTLAAIYDLGGRHVLLSGGTALA 287

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGI 325
             F+ + LVD II + +     +GG+
Sbjct: 288 AEFLRAGLVDEIISHVTPEWTSQGGV 313


>gi|34558827|gb|AAQ75171.1| riboflavin biosynthesis protein [Alvinella pompejana epibiont 7G3]
          Length = 335

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 103/235 (43%), Gaps = 36/235 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  A+  +  +  +T  NP+V  L+  +G V+        G  HAEV  L  A EE
Sbjct: 4   DDIFMRVAIDRAWEYQLITYPNPAVGALVELNGRVLAVEAHREAGTSHAEVLVLLRAYEE 63

Query: 67  -----------------------ARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                                   RG     + YVTLEPCSH G++P CA  + +   +R
Sbjct: 64  LSNRKIEFNRLDANLAHNFLLSLPRGFFSNCSIYVTLEPCSHTGKTPSCATLLSKLKPKR 123

Query: 100 VVVCVDDPDVRVSGRGLQWL-SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAV 158
           VVV   DP    SG G++ L S    +   ++E E +  +  ++  Q  KR+ +  KIA 
Sbjct: 124 VVVGTLDPISSHSG-GVELLKSVGVEVEVGVLEREAEELIEPFIIWQ--KRAFVIFKIAQ 180

Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213
           + +  IG     S       S   +H +R++   +++G  TV  D P L CR  G
Sbjct: 181 TSNGRIGGGYLSSKE-----SLTHLHKIRSKLSWLIIGGNTVRVDRPTLDCRFIG 230


>gi|169844953|ref|XP_001829197.1| riboflavin-specific deaminase [Coprinopsis cinerea okayama7#130]
 gi|116509937|gb|EAU92832.1| riboflavin-specific deaminase [Coprinopsis cinerea okayama7#130]
          Length = 239

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 105/209 (50%), Gaps = 28/209 (13%)

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
           FLH  L+R  +K   +TL  A S D  I       + ++   S    H LR+  DAILVG
Sbjct: 3   FLH--LSRSSDKLD-LTLTFAQSLDAKIAGQNGSQIALSCSESMQMTHRLRSLHDAILVG 59

Query: 197 IGTVLADDPELTCRLNGLQEH-SPMRIILDPHFKLSLDSKIIKTAL----LAPVIIVTEN 251
             T + D+P+L  RL  +++  +P  IILD + +L  + K+++       + P ++   +
Sbjct: 60  ANTAINDNPQLNTRLLPVEDQKNPRPIILDTNLRLGPNCKLLQNYASGRGVQPWLLTPGS 119

Query: 252 DDPVLALAFRKKNIN-------IIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           DDP      ++K++        +IY         D+  +L  L   G+ SL+VEGGAAV 
Sbjct: 120 DDPDW---LKRKSLLEDAGARIVIYAPSGGPRADDVPSILASLSTNGIRSLMVEGGAAVI 176

Query: 300 HSFINS-----RLVDSIILYRSQIVIGEG 323
            SF+ +     R++D +I+  + + +GEG
Sbjct: 177 QSFVTAHLKYGRIIDRVIITVAPVFVGEG 205


>gi|239621600|ref|ZP_04664631.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515475|gb|EEQ55342.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 320

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 74/142 (52%), Gaps = 9/142 (6%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE---E 66
           +M+ AL  +    G  + NP V  ++V+D  ++  G       PHAE  A + A E   +
Sbjct: 39  YMTQALELAHRGAGWVNPNPLVGTVVVRDSEILAAGYHDRYRGPHAERMAFDYADEHGID 98

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GAT   TLEPC H G  P C   I+  GI RVVV   DP+  V+G+GL+ L + G+ +
Sbjct: 99  MHGATVIDTLEPCCHVGSQPACTDLILSHGITRVVVGSIDPNPIVAGKGLRILEETGVEV 158

Query: 126 VDRMMESE----GKIFLHAYLT 143
           V  +M +E     + F H Y+T
Sbjct: 159 VYDVMRAECDAINRHFFH-YIT 179


>gi|255322011|ref|ZP_05363161.1| riboflavin biosynthesis protein RibD [Campylobacter showae RM3277]
 gi|255301115|gb|EET80382.1| riboflavin biosynthesis protein RibD [Campylobacter showae RM3277]
          Length = 371

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 5/153 (3%)

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           L+  G+  +GA AYVTLEPC+H G++PPCA+ +       VV+   D +   SG G   L
Sbjct: 106 LQNHGDLLKGAKAYVTLEPCAHRGKTPPCAELLSRLKFAEVVIARGDENTVASG-GANIL 164

Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI V   ++  E    +  +L  Q    S   L ++    N + +    +  I+   
Sbjct: 165 KSSGISVKFDVLRREADELVEPFLAWQSGNFSFFKLALSA---NGVAVGTAQNKIISNLA 221

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
           S+   H LR+ ++ +++G  TV AD P L  RL
Sbjct: 222 SRTHSHRLRSAAELLVIGGATVRADRPRLDTRL 254


>gi|134054726|emb|CAK43566.1| unnamed protein product [Aspergillus niger]
          Length = 275

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 116/267 (43%), Gaps = 49/267 (18%)

Query: 130 MESEGKIFLHAYLTRQVEKRSH------ITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
             ++ + FL  +L  +    S        TL  A S D+ + ++      ++G  SK   
Sbjct: 6   FPTQDRAFLEPHLPPKYGNPSSSSSLPFTTLTFATSLDSQLALSPGTRTVLSGPQSKAMT 65

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-------PMRIILDP--HFKLSLDS 234
           H LR++ DAIL+G+GT +AD+P L CRL G+  +        P  II+DP   ++ +  S
Sbjct: 66  HYLRSRHDAILIGVGTAVADNPGLNCRLAGVGGYGSEGLAGQPRPIIIDPSARWEFTAHS 125

Query: 235 KIIKTAL----LAPVIIVTENDDP----------------VLALAFRKKNINIIYCDCRD 274
           KI + A      AP II      P                 L +       + I     D
Sbjct: 126 KIFELARNGRGRAPFIITAAETVPSAPQREVLESHGGKFIALPVGVGSDGAHRI-----D 180

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI---PSP 328
              LL  LV  G+ S+++EGG ++ +S +      LVDS+I+  +   +G+GG+   P  
Sbjct: 181 WTALLECLVREGLRSVMIEGGGSIINSLLEPGCQTLVDSVIVTIAPTWLGQGGVVVSPRR 240

Query: 329 LEEGYL---EKNFMCVRRDYFGSDVCL 352
             EG +         V+   FG DV L
Sbjct: 241 RVEGGMVVPASRLTGVKWYPFGEDVVL 267


>gi|242309140|ref|ZP_04808295.1| riboflavin biosynthesis protein RibD [Helicobacter pullorum MIT
           98-5489]
 gi|239524181|gb|EEQ64047.1| riboflavin biosynthesis protein RibD [Helicobacter pullorum MIT
           98-5489]
          Length = 343

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 110/254 (43%), Gaps = 48/254 (18%)

Query: 25  TSTNPSV-ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-------------------- 63
           T  NP+V A ++ K+G ++        G PHAEV AL+ A                    
Sbjct: 21  TLPNPAVGAAILDKNGKLLSINAHQEAGKPHAEVLALKNAYFHLTQDSAILSLQESHQIH 80

Query: 64  ---GEEAR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
               + A+     +T Y TLEPC H G++P CA  I   GI+ +VV   DP+ +  G G 
Sbjct: 81  QYLKQNAKDIFHNSTLYTTLEPCMHEGKTPSCASLIKSLGIKNLVVAAKDPNPKAQG-GA 139

Query: 117 QWLSQKGIIVDRMMES--------EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG 168
           ++L+   I V ++ E         + +  L  +   Q +K S +  K A   D  I    
Sbjct: 140 EYLANSNIKVTKIWEDSQFNTLAIKAQELLLPFNLLQ-KKGSFVLFKYACRLDGSIDGGQ 198

Query: 169 CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF 228
             S     F+     H LR++ + +++   T+L D+P L  R   L+  +P  I +    
Sbjct: 199 ISSKETQIFM-----HNLRSKLNNLIISGKTILLDNPTLDSRFCSLENKNPPNITI---- 249

Query: 229 KLSLDSKIIKTALL 242
            L+ +S   +TA L
Sbjct: 250 -LTKNSNFPQTAPL 262


>gi|110668419|ref|YP_658230.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haloquadratum
           walsbyi DSM 16790]
 gi|109626166|emb|CAJ52622.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haloquadratum
           walsbyi DSM 16790]
          Length = 229

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 12/187 (6%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
           H+ +  A+S D  +       V I+G     +V  LRA +DAILVGIGTVLADDP L   
Sbjct: 2   HVVVNAAISIDGKLSTRRREQVAISGERDFERVSELRANNDAILVGIGTVLADDPHLVVE 61

Query: 211 LNGLQEH-------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV---LALAF 260
            +  +         +P RII+D   +   D++++     AP  I+     P      L  
Sbjct: 62  GSYRKRRQDQGLIPTPHRIIIDSRARTPTDAEVLDDE--APTYIIVSESAPTSRQADLEV 119

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
              N+ I   D   +   L+ L   G++S++VEGG  +  S   + LVD + +Y   ++I
Sbjct: 120 EGANVMIAGRDRVSMPAALSALADSGMSSIMVEGGGEIIFSLFEANLVDELSVYVGSMLI 179

Query: 321 GEGGIPS 327
           G    P+
Sbjct: 180 GGRDAPT 186


>gi|320585803|gb|EFW98482.1| riboflavin biosynthesis protein [Grosmannia clavigera kw1407]
          Length = 281

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 102/214 (47%), Gaps = 34/214 (15%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           V ++  +TL  A S D+ + +A      ++G  SK   H LR++ DAI VG+GT +ADDP
Sbjct: 28  VGQKPFVTLTFATSLDSSLSLAPGVRTALSGPQSKAMTHYLRSRHDAICVGVGTAVADDP 87

Query: 206 ELTCRL-------NGLQEHSPMRIILDPH--FKLSLDSKIIKTAL----LAPVII--VTE 250
            L CR+         +  H P  I++DPH  + L+ +S+++ TA     LAP I+  V +
Sbjct: 88  GLNCRIADDTDGAASVSAHQPRPIVIDPHDRWPLAHESRVLATARRGQGLAPYIVTAVQQ 147

Query: 251 NDDPVLALAFRKKNINIIY----------------CDCRDLKKLLTILVGRGVTSLLVEG 294
            D     L        II                  D      +L  +   G+ S+++EG
Sbjct: 148 PDAAKQKLLESHGGKYIILSTVHGSAATATAPPEPSDRFRWDDVLDSVASHGLRSIMIEG 207

Query: 295 GAAVAHSFI---NSRLVDSIILYRSQIVIGEGGI 325
           G  + ++ +   N+ LV S+I+  + + +G GG+
Sbjct: 208 GGNIINTLLEPTNTHLVRSVIVTIAPVWLGRGGV 241


>gi|157164068|ref|YP_001466380.1| riboflavin biosynthesis protein RibD [Campylobacter concisus 13826]
 gi|112801624|gb|EAT98968.1| riboflavin biosynthesis protein RibD [Campylobacter concisus 13826]
          Length = 353

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 77/145 (53%), Gaps = 9/145 (6%)

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           + + AYVTLEPCSH+G++PPCA  + E G   V++   D +   SG G   L   G+ V 
Sbjct: 110 KNSKAYVTLEPCSHHGKTPPCANLLKELGFSDVIIGSHDENKIASGGG-NLLQSAGVNVK 168

Query: 128 R-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +++      L  +L  Q    S   LKIA+S++   G+A  G   IT  +S+  VH L
Sbjct: 169 FGILKERCDKLLEPFLAYQNGGFSF--LKIALSKN---GVASGGI--ITNELSRTHVHKL 221

Query: 187 RAQSDAILVGIGTVLADDPELTCRL 211
           R+  D +++G  TV  D P L  RL
Sbjct: 222 RSVIDTLVIGGNTVRTDRPRLDTRL 246


>gi|317025956|ref|XP_001388634.2| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Aspergillus
           niger CBS 513.88]
          Length = 337

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 116/265 (43%), Gaps = 49/265 (18%)

Query: 132 SEGKIFLHAYLTRQVEKRSH------ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           ++ + FL  +L  +    S        TL  A S D+ + ++      ++G  SK   H 
Sbjct: 70  TQDRAFLEPHLPPKYGNPSSSSSLPFTTLTFATSLDSQLALSPGTRTVLSGPQSKAMTHY 129

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEH-------SPMRIILDP--HFKLSLDSKI 236
           LR++ DAIL+G+GT +AD+P L CRL G+  +        P  II+DP   ++ +  SKI
Sbjct: 130 LRSRHDAILIGVGTAVADNPGLNCRLAGVGGYGSEGLAGQPRPIIIDPSARWEFTAHSKI 189

Query: 237 IKTAL----LAPVIIVTENDDP----------------VLALAFRKKNINIIYCDCRDLK 276
            + A      AP II      P                 L +       + I     D  
Sbjct: 190 FELARNGRGRAPFIITAAETVPSAPQREVLESHGGKFIALPVGVGSDGAHRI-----DWT 244

Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI---PSPLE 330
            LL  LV  G+ S+++EGG ++ +S +      LVDS+I+  +   +G+GG+   P    
Sbjct: 245 ALLECLVREGLRSVMIEGGGSIINSLLEPGCQTLVDSVIVTIAPTWLGQGGVVVSPRRRV 304

Query: 331 EGYL---EKNFMCVRRDYFGSDVCL 352
           EG +         V+   FG DV L
Sbjct: 305 EGGMVVPASRLTGVKWYPFGEDVVL 329


>gi|159905708|ref|YP_001549370.1| bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Methanococcus maripaludis C6]
 gi|159887201|gb|ABX02138.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanococcus maripaludis C6]
          Length = 360

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 145/303 (47%), Gaps = 43/303 (14%)

Query: 88  CAQFIIECGIRRVVVCVD-DPDVRVSGRG-LQWLSQKGIIVDRMMESEGKIF-------- 137
            A  +I   I  V++  D D   RV  +  ++    +GI V+ ++  E   +        
Sbjct: 58  IADDLIARNISEVILLTDFDRAGRVYAKNIMEEFQSRGIKVNNLIRKEIIKYSRGDLKDI 117

Query: 138 --LHAYLTRQVE---KRSHITLKIAVSQDNMIGMAGCGSVP-------ITGFISKNQVHL 185
             L+ Y++R++      S I L   +S    +GM   G +        I+G     +VH 
Sbjct: 118 ESLYPYISRRININSDLSDIMLPYVISN---VGMTLDGKLATIENDSRISGENDLKRVHE 174

Query: 186 LRAQSDAILVGIGTVLADDPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKII----KTA 240
           +R   DAI+VGIGTVL DDP LT  ++N   + +P+RI++D + K+ L+++++    KT 
Sbjct: 175 IRKDVDAIMVGIGTVLKDDPRLTVHKINASPKDNPLRIVIDSNLKIPLNARVLNNDAKTV 234

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAV 298
           +     I  E ++ +  L  ++  I ++    +  DL+K++  +   G+  +L+EGG  +
Sbjct: 235 IATTTPISYEKEEKIRKL--KEMGIMVLRAGVQKVDLRKIMNEIYKMGINKILLEGGGTL 292

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGYLEKNF-MCVR---RDYFGSD--VC 351
                   L++ + +Y +  + G    P+ ++ EG+  KN   C +   + Y+  D  + 
Sbjct: 293 NWGMFKENLINEVRVYIAPKIFGGSNSPTYVDGEGF--KNVEECTKLELKKYYPLDDGIV 350

Query: 352 LEY 354
           LEY
Sbjct: 351 LEY 353


>gi|269929210|ref|YP_003321531.1| 5-amino-6-(5-phosphoribosylamino)uracilreductase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269788567|gb|ACZ40709.1| 5-amino-6-(5-phosphoribosylamino)uracilreductase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 257

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 87/181 (48%), Gaps = 8/181 (4%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R   T+  A + D  I      S  ++   S    H LRA+ DAILVGIGTVLADDP LT
Sbjct: 33  RPWATVAYAQTLDGRIATRSGDSRWVSCPDSLTFAHCLRAEHDAILVGIGTVLADDPRLT 92

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL-AFRKKNINI 267
            RL  +   SPMR+ILD   +L LD+ +++       ++VT    P   L   R     +
Sbjct: 93  TRL--VAGPSPMRVILDSRLRLPLDAAVLRDGAADQTLVVTTAQAPPERLDCIRDTGARV 150

Query: 268 IYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
           I          DL      L   G+ +LL+EGGA    + + + +VD + +  +  ++G 
Sbjct: 151 IVATGHPGGGVDLADAFHQLRELGIRTLLIEGGARTITAALRAGVVDRLAVCIAPKILGA 210

Query: 323 G 323
           G
Sbjct: 211 G 211


>gi|303244611|ref|ZP_07330944.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanothermococcus okinawensis IH1]
 gi|302485037|gb|EFL47968.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanothermococcus okinawensis IH1]
          Length = 225

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 89/168 (52%), Gaps = 9/168 (5%)

Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC-RLNGLQEHSPMRIILDPHFKLSL 232
           I+G     +VH +R   D I+VGIGT+L DDP LT  +++     +P+RI++D + ++ L
Sbjct: 30  ISGEEDLKRVHNIRKNVDGIMVGIGTILKDDPRLTVHKIDAKIGDNPIRIVIDSNLRIPL 89

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRK----KNINIIYCDCR--DLKKLLTILVGRG 286
           +++++       +I  T  D P       K    +N+ II       +LKKL+ IL  +G
Sbjct: 90  NARVLNKDA-KTIIATTLKDTPNKIEKINKLKDMENVEIIRTGIEKVNLKKLMEILYKKG 148

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGY 333
           +  +L+EGG  +        LVD + +Y +  + G  G P+ ++ EG+
Sbjct: 149 IKKILLEGGGTLNWGMFKENLVDEVSVYVAPKIFGGVGAPTYVDGEGF 196


>gi|327292501|ref|XP_003230949.1| riboflavin-specific deaminase [Trichophyton rubrum CBS 118892]
 gi|326466886|gb|EGD92339.1| riboflavin-specific deaminase [Trichophyton rubrum CBS 118892]
          Length = 645

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 93/202 (46%), Gaps = 24/202 (11%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           K  H+TL  A S D  I         ++G  SK   H LR++ DAI++G+GT LADDP L
Sbjct: 381 KFPHVTLTYAQSMDGKISSKPGVQTVLSGPESKAMTHYLRSRHDAIIIGLGTALADDPGL 440

Query: 208 TCRLNGLQEH-------SPMRIILDP--HFKLSLDSKIIKTAL----LAPVIIVTENDDP 254
            CRL G            P  +I+DP   +  S +S+++KTA      AP +IV+   + 
Sbjct: 441 NCRLEGAGGFGGFGTMWQPRPVIIDPTGRWSASAESRLLKTAAEGKGKAPWVIVSPGAEL 500

Query: 255 VLALAFRKKNINIIYCDCRD--------LKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           +       K     Y   R+         + +   L  +G+ S+++EGG  V    +N  
Sbjct: 501 LPDKLMLLKRHGGDYLRIREYNPHWRLRWEAIFGALANQGIRSVMIEGGGVVLSELLNPE 560

Query: 307 ---LVDSIILYRSQIVIGEGGI 325
               VDS+I+  +   +G  G+
Sbjct: 561 YVDFVDSVIVTVAPTYVGRNGV 582


>gi|154486847|ref|ZP_02028254.1| hypothetical protein BIFADO_00679 [Bifidobacterium adolescentis
           L2-32]
 gi|154084710|gb|EDN83755.1| hypothetical protein BIFADO_00679 [Bifidobacterium adolescentis
           L2-32]
          Length = 269

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 72/142 (50%), Gaps = 9/142 (6%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
           +M+ AL  +R   G    NP V  ++V  G V+  G       PHAE  A + A   G +
Sbjct: 14  YMAQALELARKGAGWVDPNPLVGAVVVSGGEVLATGYHDRYRGPHAERMAFDYADAHGID 73

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GAT   TLEPC H G  P C   I+  GI RVVV   DP+  V+G+GL+ L + G+ +
Sbjct: 74  LTGATVIDTLEPCCHVGSQPACTDLILAHGIARVVVGSVDPNPIVAGKGLRILEEAGVEV 133

Query: 126 VDRMMESE----GKIFLHAYLT 143
           V  +M  E     + F H Y+T
Sbjct: 134 VRDVMREECDAINRHFFH-YIT 154


>gi|326470312|gb|EGD94321.1| riboflavin-specific deaminase [Trichophyton tonsurans CBS 112818]
          Length = 648

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 93/202 (46%), Gaps = 24/202 (11%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           K  H+TL  A S D  I         ++G  +K   H LR++ DAI++G+GT LADDP L
Sbjct: 384 KFPHVTLTYAQSMDGKISTKPGVQTVLSGPETKAMTHYLRSRHDAIIIGLGTALADDPGL 443

Query: 208 TCRLNGLQEH-------SPMRIILDP--HFKLSLDSKIIKTAL----LAPVIIVTENDDP 254
            CRL G            P  +I+DP   +  S +S+++KTA      AP +IV+   + 
Sbjct: 444 NCRLEGAGGFGGFGTMWQPRPVIIDPTGRWSASAESRLLKTAAEGKGKAPWVIVSPGAEL 503

Query: 255 VLALAFRKKNINIIYCDCRD--------LKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           +       K     Y   R+         + +   L  +G+ S+++EGG  V    +N  
Sbjct: 504 LPDKLMLLKRHGGDYLRIREYNPHWRLRWEAIFGALANQGIRSIMIEGGGVVLSELLNPE 563

Query: 307 ---LVDSIILYRSQIVIGEGGI 325
               VDS+I+  +   +G  G+
Sbjct: 564 YVDFVDSVIVTVAPTYVGRNGV 585


>gi|326481151|gb|EGE05161.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Trichophyton
           equinum CBS 127.97]
          Length = 648

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 93/202 (46%), Gaps = 24/202 (11%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           K  H+TL  A S D  I         ++G  +K   H LR++ DAI++G+GT LADDP L
Sbjct: 384 KFPHVTLTYAQSMDGKISTKPGVQTVLSGPETKAMTHYLRSRHDAIIIGLGTALADDPGL 443

Query: 208 TCRLNGLQEH-------SPMRIILDP--HFKLSLDSKIIKTAL----LAPVIIVTENDDP 254
            CRL G            P  +I+DP   +  S +S+++KTA      AP +IV+   + 
Sbjct: 444 NCRLEGAGGFGGFGTMWQPRPVIIDPTGRWSASAESRLLKTAAEGKGKAPWVIVSPGAEL 503

Query: 255 VLALAFRKKNINIIYCDCRD--------LKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           +       K     Y   R+         + +   L  +G+ S+++EGG  V    +N  
Sbjct: 504 LPDKLMLLKRHGGDYLRIREYNPHWRLRWEAIFGALANQGIRSIMIEGGGVVLSELLNPE 563

Query: 307 ---LVDSIILYRSQIVIGEGGI 325
               VDS+I+  +   +G  G+
Sbjct: 564 YVDFVDSVIVTVAPTYVGRNGV 585


>gi|134045275|ref|YP_001096761.1| bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Methanococcus maripaludis C5]
 gi|132662900|gb|ABO34546.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanococcus maripaludis C5]
          Length = 360

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 119/236 (50%), Gaps = 21/236 (8%)

Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP-------ITGFISKNQVHLLRAQS 190
           L+ Y++R++   S ++  +     + +GM   G +        I+G     +VH +R   
Sbjct: 120 LYPYISRRITINSDLSDIMIPYVISNVGMTLDGKLATIENDSRISGENDLKRVHEIRKDV 179

Query: 191 DAILVGIGTVLADDPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKII----KTALLAPV 245
           DAI+VGIGTVL DDP LT  ++N   + +P+RI++D + K+ L+++++    KT +    
Sbjct: 180 DAIMVGIGTVLKDDPRLTVHKINASPKDNPLRIVVDSNLKVPLNARVLNKDAKTVIATTT 239

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            I  E ++ +  L  ++  I ++    +  DL+K++  +   G+  +L+EGG  +     
Sbjct: 240 PISDEKEEKIRKL--KEMGIMVLQAGVQKVDLRKIMNEIYKMGINKILLEGGGTLNWGMF 297

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR---RDYFGSD--VCLEY 354
              L++ + +Y +  V G    P+ ++    +    C +   ++Y+  D  + LEY
Sbjct: 298 KENLINEVRVYIAPKVFGGANSPTYVDGKGFKNVEECTKLELKNYYPLDDGIVLEY 353


>gi|45358911|ref|NP_988468.1| bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Methanococcus maripaludis S2]
 gi|45047777|emb|CAF30904.1| Conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 360

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 118/239 (49%), Gaps = 27/239 (11%)

Query: 138 LHAYLTRQVE---KRSHITLKIAVSQDNMIGMAGCGSVP-------ITGFISKNQVHLLR 187
           L+ Y++R++      S I L   +S    +GM   G +        I+G     +VH +R
Sbjct: 120 LYPYISRRINFNSDLSDIMLPFVISN---VGMTLDGKLATIDNDSRISGENDLKRVHEIR 176

Query: 188 AQSDAILVGIGTVLADDPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKII----KTALL 242
            + DAI+VGIGTVL DDP LT  ++N   + +P+RI++D + K+ L ++++    KT + 
Sbjct: 177 KEVDAIMVGIGTVLKDDPRLTVHKINASPKDNPLRIVVDSNLKIPLTARVLNKDAKTVIA 236

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAH 300
               I  E ++ +  L   +  I ++    +  DL+K++  +   G+  +L+EGG  +  
Sbjct: 237 TTTPISDEKEEKIRKL--NEMGIIVLQAGVQKVDLRKIMNEIYKMGINKILLEGGGTLNW 294

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR---RDYFGSD--VCLEY 354
                 L++ + +Y +  V G    P+ ++    +    C +   ++Y+  D  + LEY
Sbjct: 295 GMFKENLINEVRVYIAPKVFGGASSPTYVDGNGFKNVEECTKLELKNYYPLDDGIVLEY 353


>gi|261350765|ref|ZP_05976182.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
           [Methanobrevibacter smithii DSM 2374]
 gi|288860520|gb|EFC92818.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
           [Methanobrevibacter smithii DSM 2374]
          Length = 223

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 23/223 (10%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           + ++ L  A++ D  I     GS  I+G     +VH LR + D I+VGI TV+AD+P LT
Sbjct: 2   KPYVILNAAMTLDGKIATK-TGSSNISGEKDLKRVHELRREVDGIMVGINTVIADNPRLT 60

Query: 209 C-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND---DPVLA---LAFR 261
             +++   E +P+R+++D   +  + ++I  T   A  II   ND   D +++     F 
Sbjct: 61  VHKIDANPEDNPVRVVVDSKCRTPIAARI--TNKDAKTIIAGANDYKLDFIVSDRYANFT 118

Query: 262 KKNINIIYC-DCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
           K+ I+  +  D R DLK L+  L   G+ +L++EGG+ +  S I   L+D I +  +  V
Sbjct: 119 KRGIDFFFSGDKRVDLKDLMNYLYESGIKTLMLEGGSTLNFSMIKEGLIDEIRICVAPFV 178

Query: 320 IG--------EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           +G        +G     ++EG   + F   +    G D+ L+Y
Sbjct: 179 VGGKDSHTLFDGEGFDTMDEGVRLELFDSFK---LGDDLILQY 218


>gi|327310583|ref|YP_004337480.1| 2, 5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           [Thermoproteus uzoniensis 768-20]
 gi|326947062|gb|AEA12168.1| 2, 5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           [Thermoproteus uzoniensis 768-20]
          Length = 217

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 94/178 (52%), Gaps = 8/178 (4%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R ++ L  AV+ D  I  +  G   ++  +   ++H LRA+ DA+LVG GTV  D+P LT
Sbjct: 2   RPYVYLAAAVTVDGRIA-SKTGYSRLSCPVDLKRLHALRAKVDAVLVGAGTVKIDNPRLT 60

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL-AFRKKNINI 267
            R   ++  +P+R+I+D    +   +++  ++  AP I++T    P   + A R++ + +
Sbjct: 61  VRY--VEGRNPVRVIVDGSLSVPQSARVFDSS--APTIVLTTEKAPREKVAALRERGVEV 116

Query: 268 IYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           I    D   L++ L  L   G+ S+LVEGG  +    ++  LVD +++  +    G G
Sbjct: 117 IQFPGDAVPLREALERLYASGIRSVLVEGGGRINWQMLSQCLVDELVITVTPYAFGAG 174


>gi|15605930|ref|NP_213307.1| riboflavin specific deaminase [Aquifex aeolicus VF5]
 gi|2983103|gb|AAC06708.1| riboflavin specific deaminase [Aquifex aeolicus VF5]
          Length = 224

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 96/180 (53%), Gaps = 11/180 (6%)

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           +H +RA+ D I+VG  TV  D+P LT R    +  +P+RII      + LD+ ++ T   
Sbjct: 41  LHEIRAKVDGIMVGCETVRTDNPSLTVRY--AKGKNPVRIIPCSTANVPLDANVLNTKE- 97

Query: 243 APVIIVTENDDPVLALAFRKK---NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           AP II T    P   L   K+    + ++  +  D  KLL  L  RG+ SL+VEGGA++ 
Sbjct: 98  APTIIATTERAPKERLEKIKELGAEVIVVGDELVDFDKLLPELYRRGIKSLMVEGGASIN 157

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPL-EEGYLE-KNFMCVR-RDYF--GSDVCLEY 354
             F+  R+VD I L    +++G   +P+ +  EG+ + KN + +R R +F  G  +  E+
Sbjct: 158 WEFVRRRVVDEIRLIHLPVIVGGENVPTLVGGEGFKKLKNLLHLRLRSHFVRGKQLITEW 217


>gi|330930301|ref|XP_003302977.1| hypothetical protein PTT_14981 [Pyrenophora teres f. teres 0-1]
 gi|311321324|gb|EFQ88912.1| hypothetical protein PTT_14981 [Pyrenophora teres f. teres 0-1]
          Length = 280

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 109/233 (46%), Gaps = 29/233 (12%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           +  +TL  A S D+ + +A      ++G  SK   H LR++ DAIL+G GT  AD+P L 
Sbjct: 39  KPFVTLTFATSLDSQLAIAPGVQTALSGPRSKAMTHFLRSRHDAILIGAGTATADNPSLN 98

Query: 209 CRLNGLQEH-------SPMRIILDPH--FKLSLDSKIIKTAL----LAPVII--VTENDD 253
           CR+ G+  +        P  +++DPH  ++ + +SK+++ A      AP I+   + + D
Sbjct: 99  CRIEGVGGYGSEGLVGQPRPVVVDPHGRWQFNEESKVLRLAKEGKGKAPYIVTCTSPSAD 158

Query: 254 PVLALAFRKKNINIIYCDCRDLKK-------LLTILVGRGVTSLLVEGGAAVAHSFINS- 305
               L        ++    +D+ +       +L  L  +G+ S+++EGG  V +  +   
Sbjct: 159 RRAILENVGGKFLLLGLSAKDVSQAGSSWHIILDALRQQGIQSVMIEGGGFVINDLLGPG 218

Query: 306 ---RLVDSIILYRSQIVIGEGGI---PSPLEEGYLEKNFMCVRRDYFGSDVCL 352
               LVDS+I+  +   +G+GG+   P    E         VR    G DV L
Sbjct: 219 PAYSLVDSVIVTIAPTWLGKGGVQVCPDGGSERLPVTRLQNVRWVPLGEDVVL 271


>gi|171690512|ref|XP_001910181.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945204|emb|CAP71315.1| unnamed protein product [Podospora anserina S mat+]
          Length = 260

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 20/224 (8%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           + H+TL  A S D  + +A      ++G  SK+  H LR + +AILVG  T L D+P L 
Sbjct: 30  KPHLTLTYATSLDASLSLAPGVRTTLSGPYSKSMTHYLRTRHNAILVGCTTALVDNPALN 89

Query: 209 CRLNGLQ--EHSPMRIILDP--HFKLSLDSKIIKTAL----LAPVIIV-----TENDDPV 255
            RL  +   +  P  IILDP   +  + DS++I+ A       P ++      T+    +
Sbjct: 90  SRLGSITSLDQQPRPIILDPKGRWDFTEDSQVIRLAAEFKGKGPWVVTKRGGETKERGEL 149

Query: 256 LALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFI---NSRLVDSI 311
           L     K  +     D R     +L++L  +GV S++VEGG  V +S +    +RLVDS+
Sbjct: 150 LERVGGKFLVLETGEDGRFKWGDVLSVLGEQGVRSVMVEGGGEVINSLLIDPENRLVDSV 209

Query: 312 ILYRSQIVIGEGGI---PSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           I+  +   +G+GG+   PS  +    +     V     G DV L
Sbjct: 210 IITIAPTWLGKGGVVVSPSRQQGQTSQLKLRDVSWQPHGEDVVL 253


>gi|148642125|ref|YP_001272638.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Methanobrevibacter smithii ATCC 35061]
 gi|222444696|ref|ZP_03607211.1| hypothetical protein METSMIALI_00309 [Methanobrevibacter smithii
           DSM 2375]
 gi|148551142|gb|ABQ86270.1| riboflavin-specific deaminase [Methanobrevibacter smithii ATCC
           35061]
 gi|222434261|gb|EEE41426.1| hypothetical protein METSMIALI_00309 [Methanobrevibacter smithii
           DSM 2375]
          Length = 223

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 111/223 (49%), Gaps = 23/223 (10%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           + ++ L  A++ D  I     GS  I+G     +VH LR + D I+VGI TV+AD+P LT
Sbjct: 2   KPYVILNAAMTLDGKIATK-TGSSNISGEKDLKRVHELRREVDGIMVGINTVIADNPRLT 60

Query: 209 C-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA------FR 261
             +++   E +P+R+++D   +  + ++I  T   A  II   ND  +  +       F 
Sbjct: 61  VHKIDANPEDNPVRVVVDSKCRTPIAARI--TNKDAKTIIAGANDYKLEFIVSDRYANFT 118

Query: 262 KKNINIIYC-DCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
           K+ I+  +  D R DLK L+  L   G+ +L++EGG+ +  S I   L+D I +  +  V
Sbjct: 119 KRGIDFFFSGDKRVDLKDLMNYLYESGIKTLMLEGGSTLNFSMIKEGLIDEIRICVAPFV 178

Query: 320 IG--------EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           +G        +G     ++EG   + F   +    G D+ L+Y
Sbjct: 179 VGGKDSHTLFDGEGFDTMDEGVRLELFDSFK---LGDDLILQY 218


>gi|154173746|ref|YP_001408781.1| riboflavin biosynthesis protein RibD [Campylobacter curvus 525.92]
 gi|153793001|gb|EAT99582.2| riboflavin biosynthesis protein RibD [Campylobacter curvus 525.92]
          Length = 376

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 106/254 (41%), Gaps = 56/254 (22%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA------ 59
           D  +M  AL  +     LT  NP+V C+I  ++G ++        GC HAE  A      
Sbjct: 3   DEFYMQLALNKAWEFQILTYPNPAVGCVITDRNGKILSCEAHKKAGCLHAEPMAVFFALC 62

Query: 60  ---------------------------LEEAGEEA---------------RGATAYVTLE 77
                                      L+ A  E                +GA AYVTLE
Sbjct: 63  ALSGEFLAKFLDAYGAKFSQNFSGLDELKSAELEPNFTYEFILAYHANLLKGAKAYVTLE 122

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
           PCSH+GR+PPCA+ +       VV+   D +   SG G + L   G+ V   +  +  + 
Sbjct: 123 PCSHHGRTPPCAELLKRLNFGEVVIGARDENKIASG-GAEILKNSGVRVKFDVLKDKALE 181

Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
           L A   R     +   LKIA+S +   G+A  G   I+G  S+  VH LR+  D +++G 
Sbjct: 182 LIAPF-RAWHDGNFSFLKIALSAN---GVANGGV--ISGEQSRTHVHKLRSVIDLLVIGG 235

Query: 198 GTVLADDPELTCRL 211
            TV  D P L  RL
Sbjct: 236 NTVRTDRPRLDTRL 249


>gi|315040531|ref|XP_003169643.1| hypothetical protein MGYG_08552 [Arthroderma gypseum CBS 118893]
 gi|311346333|gb|EFR05536.1| hypothetical protein MGYG_08552 [Arthroderma gypseum CBS 118893]
          Length = 645

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 98/227 (43%), Gaps = 38/227 (16%)

Query: 137 FLHAYLTRQVE--------------KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           FL  YL +  E              K  H+TL  A S D  I         ++G  +K  
Sbjct: 356 FLEPYLPKAGECQSNGNANPNSGEAKFPHVTLTYAQSMDGKISTKPGVQTVLSGPETKTM 415

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-------SPMRIILDP--HFKLSLD 233
            H LR++ DAI++G+GT +ADDP L CRL G            P  +I+DP   +  S D
Sbjct: 416 THYLRSRHDAIIIGLGTAVADDPGLNCRLEGAGGFGGFGTMWQPRPVIIDPTGRWSASAD 475

Query: 234 SKIIKTAL----LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--------LKKLLTI 281
           S+++ TA      AP +IV+   + +       K     Y   R+         + +   
Sbjct: 476 SRLLMTAAEGKGKAPWVIVSPGAELLPDKLLLLKRHGGDYLRIREYNPHWRLRWEAIFGA 535

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI 325
           L  +G+ S+++EGG  V    +N      VDS+I+  +   IG  G+
Sbjct: 536 LANQGIRSVMIEGGGIVLSELLNPEYVDFVDSVIVTVAPTYIGRNGV 582


>gi|302507506|ref|XP_003015714.1| riboflavin biosynthesis protein Rib7, putative [Arthroderma
           benhamiae CBS 112371]
 gi|291179282|gb|EFE35069.1| riboflavin biosynthesis protein Rib7, putative [Arthroderma
           benhamiae CBS 112371]
          Length = 645

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 93/202 (46%), Gaps = 24/202 (11%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           K  H+TL  A S D  I         ++G  +K   H LR++ DAI++G+GT LADDP L
Sbjct: 381 KFPHVTLTYAQSMDGKISTKPGVQTLLSGPETKAMTHYLRSRHDAIIIGLGTALADDPGL 440

Query: 208 TCRLNGLQEH-------SPMRIILDP--HFKLSLDSKIIKTAL----LAPVIIVTENDDP 254
            CRL G            P  +I+DP   +  S +S+++KTA      AP +IV+   + 
Sbjct: 441 NCRLEGAGGFGGFGTMWQPRPVIIDPTGRWSASAESRLLKTAAEGKGKAPWVIVSPGAEL 500

Query: 255 VLALAFRKKNINIIYCDCRD--------LKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           +       K     Y   R+         + +   L  +G+ S+++EGG  V    +N  
Sbjct: 501 LPDKLMLLKRHGGDYLRIREYNPHWRLRWEAIFGALANQGIRSVMIEGGGVVLSELLNPE 560

Query: 307 ---LVDSIILYRSQIVIGEGGI 325
               VDS+I+  +   +G  G+
Sbjct: 561 YVDFVDSVIVTVAPTYVGRNGV 582


>gi|302666117|ref|XP_003024661.1| riboflavin biosynthesis protein Rib7, putative [Trichophyton
           verrucosum HKI 0517]
 gi|291188727|gb|EFE44050.1| riboflavin biosynthesis protein Rib7, putative [Trichophyton
           verrucosum HKI 0517]
          Length = 645

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 93/202 (46%), Gaps = 24/202 (11%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           K  H+TL  A S D  I         ++G  +K   H LR++ DAI++G+GT LADDP L
Sbjct: 381 KFPHVTLTYAQSMDGKISTKPGVQTLLSGPDTKAMTHYLRSRHDAIIIGLGTALADDPGL 440

Query: 208 TCRLNGLQEH-------SPMRIILDP--HFKLSLDSKIIKTAL----LAPVIIVTENDDP 254
            CRL G            P  +I+DP   +  S +S+++KTA      AP +IV+   + 
Sbjct: 441 NCRLEGAGGFGGFGTMWQPRPVIIDPTGRWSASAESRLLKTAAEGKGKAPWVIVSPGAEL 500

Query: 255 VLALAFRKKNINIIYCDCRD--------LKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           +       K     Y   R+         + +   L  +G+ S+++EGG  V    +N  
Sbjct: 501 LPDKLMLLKRHGGDYLRIREYNPHWRLRWEAIFGALANQGIRSVMIEGGGVVLSELLNPE 560

Query: 307 ---LVDSIILYRSQIVIGEGGI 325
               VDS+I+  +   +G  G+
Sbjct: 561 YVDFVDSVIVTVAPTYVGRNGV 582


>gi|319789432|ref|YP_004151065.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Thermovibrio ammonificans HB-1]
 gi|317113934|gb|ADU96424.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Thermovibrio ammonificans HB-1]
          Length = 220

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 103/203 (50%), Gaps = 11/203 (5%)

Query: 148 KRSHITLKIAVSQDNMIGMA-GCGSVPITGFI---SKNQVHLLRAQSDAILVGIGTVLAD 203
           +R ++ +   V+ D  + +A G  S  I   +   +   +H +RA+ D I+VG  TV  D
Sbjct: 2   ERPYVLIVSEVTIDGKLTLAKGVSSKEIMKLMDDEANRYLHAVRAECDGIMVGANTVRID 61

Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
           +P LT R   ++  +P+R+I      + LD+ ++ T +   +I V+E        AF+++
Sbjct: 62  NPNLTVRY--VEGKNPIRVIPTSTGDIPLDANVLNTEVAPTIIAVSERAPKEKVEAFKER 119

Query: 264 NINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
              ++      ++   LL +L  RG+  L+VEGG+AV    I + LVD I L    +++G
Sbjct: 120 GAEVLVAGKEKIEFPLLLKLLKERGIEKLMVEGGSAVNWELIKNDLVDEIRLIHLPVIVG 179

Query: 322 EGGIPSPLE-EGYLEKNFMCVRR 343
              +PS +  EG+  K    V+R
Sbjct: 180 GDDVPSLVSGEGF--KTLSAVKR 200


>gi|262196785|ref|YP_003267994.1| 5-amino-6-(5-phosphoribosylamino)uracilreductase [Haliangium
           ochraceum DSM 14365]
 gi|262080132|gb|ACY16101.1| 5-amino-6-(5-phosphoribosylamino)uracilreductase [Haliangium
           ochraceum DSM 14365]
          Length = 319

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 104/212 (49%), Gaps = 15/212 (7%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ----VHLLRAQSDAILVGIGTVLADD 204
           R  +   +A S D  I  A CG+   + +IS NQ     H +RA  DA+LVG  TV+ DD
Sbjct: 111 RPRVIAHLAQSLDGRIATA-CGT---SQWISGNQDLVHNHRMRALCDAVLVGAETVIHDD 166

Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
           P+LTCR   ++   P R++LDP  ++S + +I +   +AP +++  N +   AL      
Sbjct: 167 PQLTCR--EVEGAHPTRVVLDPRGRVSAERRIFQD-RVAPTVVIG-NQEGEHALPAHVTR 222

Query: 265 INIIYCDCRDLK-KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           + +     R     +L  L   G+  L VEGG     +F+ + L+D + +  + ++IG G
Sbjct: 223 LQVGTPGARIAPGDILDALAVHGIHRLFVEGGGLTVSAFLQAGLLDRLQITVAPMIIGSG 282

Query: 324 GIPSPLEE-GYLEKNFMC-VRRDYFGSDVCLE 353
                L +   LE      VRR  F +DV  E
Sbjct: 283 RASISLPDIDSLEHALRPEVRRFVFDTDVMFE 314


>gi|217076038|gb|ACJ86378.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase [Leuconostoc
           mesenteroides]
          Length = 135

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 59/113 (52%), Gaps = 2/113 (1%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR--GATAYVTLEPCSHY 82
           T  NP    +IVKDG VI  G     G  HAE+ A      +    GAT YVTLEPCS +
Sbjct: 22  TFENPRGGAVIVKDGQVITTGYHEKFGEAHAEINAFNRVKNKTEFLGATLYVTLEPCSTH 81

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135
           G+   CA  I   G++RVVV   DP+   + +G++ L   GI VD +   E K
Sbjct: 82  GKVGSCAVQIQNWGLKRVVVGSIDPNPSTNAKGIKMLGSPGISVDVLNTYENK 134


>gi|126465369|ref|YP_001040478.1| deaminase-reductase domain-containing protein [Staphylothermus
           marinus F1]
 gi|126014192|gb|ABN69570.1| bifunctional deaminase-reductase domain protein [Staphylothermus
           marinus F1]
          Length = 227

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 89/175 (50%), Gaps = 13/175 (7%)

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           ++H  R+  DA++VG  TV+ DDP LT RL G +   P RI++D   +++   K+  T  
Sbjct: 37  RLHYFRSIVDAVMVGANTVIIDDPLLTIRLPGYKGKQPYRIVIDGKLRVTPKYKVFNTK- 95

Query: 242 LAPVIIVT--ENDDPVLALAFRKKNINIIYCDCR-------DLKKLLTILVGR-GVTSLL 291
            AP I++T   N D  +   F  K + +++ D         DL+K +  L     +  +L
Sbjct: 96  YAPTILITSISNKDREIIKRFTSKGVKVLFIDTDKNDPSKLDLRKAVEKLYREFYIRKIL 155

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
           +EGG  +  S + ++L+D + L  S ++IG     + L E +LE     V ++ F
Sbjct: 156 IEGGGQLLASLLKNKLIDELYLSISPLIIGLNK--TSLIEDFLESPLKLVLKNIF 208


>gi|302423090|ref|XP_003009375.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Verticillium
           albo-atrum VaMs.102]
 gi|261352521|gb|EEY14949.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Verticillium
           albo-atrum VaMs.102]
          Length = 203

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 95/193 (49%), Gaps = 24/193 (12%)

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDP--HFKLSLDSKIIKTA 240
           H LR++ DAI VG+GTV+ADDP L CR+ G+  +  P  II+DP   +++S  SK+++ A
Sbjct: 3   HYLRSRHDAICVGVGTVVADDPALNCRIEGVGLKKQPRPIIIDPSCRWEVSARSKVLEVA 62

Query: 241 L----LAPVIIVTEND-DPVLALAFRKKNINIIYCDCR-------DLKKLLTILVGRGVT 288
                LAP +I +  D DP       +     I              + +L  L   G+ 
Sbjct: 63  RAGLGLAPYVITSRWDVDPARRGLLEQHGGKFITVQMDAAGSGRFAWRDILAALHREGLG 122

Query: 289 SLLVEGGAAVAHSFI---NSRLVDSIILYRSQIVIGEGGI---PSPLEE---GYLEKNFM 339
           S+++EGG  V +S +   +  LVDS+I+  +   +G+GG+   P  +E+           
Sbjct: 123 SVMIEGGGQVINSLLAPTSHHLVDSVIVTIAPTWLGQGGVVVSPERVEQNGTAISAARLS 182

Query: 340 CVRRDYFGSDVCL 352
            V    FG DV L
Sbjct: 183 HVSWHPFGEDVVL 195


>gi|288931633|ref|YP_003435693.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Ferroglobus placidus DSM 10642]
 gi|288893881|gb|ADC65418.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Ferroglobus placidus DSM 10642]
          Length = 225

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 8/187 (4%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           +  + + +A S D  I       + I+      +V  LRA+SDAI+VGIGTVLAD+P+LT
Sbjct: 2   KPFVFVNVAASVDGKISNERRVQLRISSKEDMERVDKLRAESDAIMVGIGTVLADNPKLT 61

Query: 209 CRLNGLQE--------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
            + + L++         +P+R+++D   ++  D+ I+       + +  + D   L    
Sbjct: 62  VKSDELRKKRVLEGKPENPLRVVVDSKARIPEDALILNDEAETLLAVSKKADLEKLKKLQ 121

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
            K  I +   +  DL +L+  L   GV  L+VEGG  +  S     LVD I +Y   ++I
Sbjct: 122 EKAMIFVAGEERVDLSELMEFLYHIGVRKLMVEGGGELIASLFREGLVDEIYVYYGNVII 181

Query: 321 GEGGIPS 327
                P+
Sbjct: 182 AGKNSPT 188


>gi|121712499|ref|XP_001273861.1| riboflavin biosynthesis protein Rib7, putative [Aspergillus
           clavatus NRRL 1]
 gi|119402013|gb|EAW12435.1| riboflavin biosynthesis protein Rib7, putative [Aspergillus
           clavatus NRRL 1]
          Length = 279

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 101/223 (45%), Gaps = 32/223 (14%)

Query: 135 KIFLHAYLTRQ------VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + FL  +L  Q       +     TL  A S D+ + ++      ++G  SK   H LR+
Sbjct: 17  RAFLEPHLPPQNATFSTTKTLPFTTLTFATSLDSSLALSPGARTVLSGPQSKAMTHFLRS 76

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQ-------EHSPMRIILDP--HFKLSLDSKIIKT 239
           + DAIL+G+GT +ADDP L CR+ G+        +  P  II+DP   +  +  SKI+  
Sbjct: 77  RHDAILIGVGTAVADDPGLNCRIQGVGGYGADGLQGQPRPIIIDPSCRWDFTESSKILSL 136

Query: 240 AL----LAPVIIVTENDDPVLALAFRKKN-INIIYCDC---------RDLKKLLTILVGR 285
                   P II      P    A  +++    I  D           D   +L  L   
Sbjct: 137 VREGRGRGPFIITGVQSPPSERKALLERHGGKFITLDAMTTAAGEHRMDWSVVLECLKTE 196

Query: 286 GVTSLLVEGGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI 325
           G+ S++VEGG  + +S ++     L+DS+I+  +   +G+GG+
Sbjct: 197 GLGSVMVEGGGTIINSLLDPSSQHLIDSVIVTIAPTWLGQGGV 239


>gi|190346556|gb|EDK38668.2| hypothetical protein PGUG_02766 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 281

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 97/199 (48%), Gaps = 22/199 (11%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
            K+  +TL  A S D+ I  A      I+G  +K+  H +R++ DAI+VGIGTVLADDP+
Sbjct: 56  HKKPFVTLTYAQSLDSRIAAAPGIQTKISGPETKSMTHYIRSKHDAIMVGIGTVLADDPK 115

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLS---------LDSKIIKTALLAPVIIV-------TE 250
           L CR    +  SP  ++LDP  K           +D        LAP IIV       T+
Sbjct: 116 LNCRHEAGK--SPRPVVLDPSGKWDYKSSQLHQLVDQNTDDIKALAPYIIVRDDVDIDTK 173

Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR---- 306
           N+  V     +   +++     ++   +   L    ++S+++EGGA + +  ++ +    
Sbjct: 174 NEKEVSRQGGKYIRLSLSRNRLQNWHLIFDELDKLSISSVMIEGGAQIINDLLSFQKTEA 233

Query: 307 LVDSIILYRSQIVIGEGGI 325
            + S+I+    + +GE G+
Sbjct: 234 FIHSLIITIGPVYLGEQGV 252


>gi|299142759|ref|ZP_07035888.1| riboflavin biosynthesis protein RibD [Prevotella oris C735]
 gi|298575788|gb|EFI47665.1| riboflavin biosynthesis protein RibD [Prevotella oris C735]
          Length = 116

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 56/111 (50%), Gaps = 4/111 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M   L+ +         NP V  +IV    +IG G     G  HAEV A      E   
Sbjct: 6   YMKRCLQLAENGRQNAKLNPMVGAVIVAHDRIIGEGYHVRCGEGHAEVNAFASVRPEDEK 65

Query: 70  ----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
               AT YV+LEPCSHYG++PPCA  II  GI+R V    DP  +V GRG+
Sbjct: 66  LLPEATIYVSLEPCSHYGKTPPCADLIISKGIKRCVCGCVDPFAKVQGRGI 116


>gi|146418142|ref|XP_001485037.1| hypothetical protein PGUG_02766 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 281

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 98/199 (49%), Gaps = 22/199 (11%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
            K+  +TL  A   D+ I  A      I+G  +K+  H +R++ DAI+VGIGTVLADDP+
Sbjct: 56  HKKPFVTLTYAQLLDSRIAAAPGIQTKISGPETKSMTHYIRSKHDAIMVGIGTVLADDPK 115

Query: 207 LTCRLNGLQEHSPMRIILDP----HFKLS-----LDSKIIKTALLAPVIIV-------TE 250
           L CR    +  SP  ++LDP     +KLS     +D        LAP IIV       T+
Sbjct: 116 LNCRHEAGK--SPRPVVLDPSGKWDYKLSQLHQLVDQNTDDIKALAPYIIVRDDVDIDTK 173

Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI----NSR 306
           N+  V     +   ++++    ++   +   L    ++S+++EGGA + +  +       
Sbjct: 174 NEKEVSRQGGKYIRLSLLRNRLQNWHLIFDELDKLSISSVMIEGGAQIINDLLLFQKTEA 233

Query: 307 LVDSIILYRSQIVIGEGGI 325
            + S+I+    + +GE G+
Sbjct: 234 FIHSLIITIGPVYLGEQGV 252


>gi|307106809|gb|EFN55054.1| hypothetical protein CHLNCDRAFT_24125 [Chlorella variabilis]
          Length = 697

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 150/383 (39%), Gaps = 48/383 (12%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D R +  A   S+  +G T  +P   C++V              G P AE     + 
Sbjct: 12  AAKDLRHLLRAAEVSQEPMGQTQPHPYAGCVLVSSE-----------GVPLAEASQWAQQ 60

Query: 64  GEEA-------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           G EA              G TAY+ LE C            +   G+ RVVV +  P   
Sbjct: 61  GTEAPECAAARQAGGAAAGGTAYLNLE-CGDCHGDRAAVDALAGAGVARVVVGMRHPLPH 119

Query: 111 VSGRGLQWLSQKGIIVDRMMES---------EGKIFL-------HAYLTRQVEKRSHITL 154
           + G  L  L   G+ V  + E+         E +  L        A L R V KR    L
Sbjct: 120 LRGTALAQLRAAGLRVAVLGEAPCGAGVAGEEAEAALDACLAANEALLHRAVIKRPMGLL 179

Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214
           K A++ D  I      S  ++   S+ +V   RA+SDA++VG  TV  D+P+LT R  G 
Sbjct: 180 KYAMTLDGKIATHTGHSAWVSSAQSRQRVFETRARSDAVIVGGCTVRRDNPQLTTRREG- 238

Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274
             H PMRI++     L  ++K+   +    V+            A R++ + ++  D   
Sbjct: 239 -GHQPMRIVMSRTLDLPAEAKLWDVSHAPTVVATQRGARRDFQDALRRRGVEVLEFDFLT 297

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-GY 333
              +      RG    L E G  +A   I +  +   + + +  +IG    P+P+ + G+
Sbjct: 298 PDAVARYCYDRGFLQCLWECGGMLAAPAIATGAIHKAMAFVAPKLIGGSRAPTPVGDLGF 357

Query: 334 LEKN----FMCVRRDYFGSDVCL 352
           +E         VR    G D+ L
Sbjct: 358 VEMTQALPLSEVRWQQVGPDLML 380


>gi|15668852|ref|NP_247655.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Methanocaldococcus jannaschii DSM 2661]
 gi|2493563|sp|Q58085|RIB7_METJA RecName: Full=Putative 5-amino-6-(5-phosphoribosylamino)uracil
           reductase; AltName: Full=HTP reductase
 gi|1591385|gb|AAB98665.1| riboflavin-specific deaminase (ribG) [Methanocaldococcus jannaschii
           DSM 2661]
          Length = 224

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 18/163 (11%)

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +VH +RA  D I+VGIGTVL DDP LT       + +P+RI++D   ++ L+++++    
Sbjct: 40  RVHKIRANVDGIMVGIGTVLKDDPRLTVH-KIKSDRNPVRIVVDSKLRVPLNARVLNKD- 97

Query: 242 LAPVIIVTENDDPVLALAFRKKNINII------YCDCR----DLKKLLTILVGRGVTSLL 291
            A  II T  D        ++K I I+         C     DLKKL+ IL  +G+ S+L
Sbjct: 98  -AKTIIATTED----TNEEKEKKIKILEDMGVEVVKCGRGKVDLKKLMDILYDKGIKSIL 152

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGY 333
           +EGG  +        LVD + +Y +  + G    P+ ++ EG+
Sbjct: 153 LEGGGTLNWGMFKEGLVDEVSVYIAPKIFGGKEAPTYVDGEGF 195


>gi|289192977|ref|YP_003458918.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanocaldococcus sp. FS406-22]
 gi|288939427|gb|ADC70182.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanocaldococcus sp. FS406-22]
          Length = 220

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 84/158 (53%), Gaps = 8/158 (5%)

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +VH +RA  D I+VGIGTVL D+P LT       + +P+RI++D   ++ L+++++    
Sbjct: 36  RVHKIRANVDGIMVGIGTVLKDNPRLTVH-KIKSDRNPVRIVVDSKLRVPLNARVLNKDA 94

Query: 242 LAPVIIVTENDDPVLALAFR---KKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGA 296
              +I  TE+ D       +      I ++ C     DLKKL+ IL  +G+ S+L+EGG 
Sbjct: 95  -KTIIATTEDGDEEKEKKIKILEDMGIEVVKCGRGKVDLKKLMEILYDKGIKSILLEGGG 153

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGY 333
            +        LVD + +Y +  + G    P+ ++ EG+
Sbjct: 154 TLNWGMFKEGLVDEVSVYIAPKIFGGKDTPTYVDGEGF 191


>gi|169607048|ref|XP_001796944.1| hypothetical protein SNOG_06577 [Phaeosphaeria nodorum SN15]
 gi|111065288|gb|EAT86408.1| hypothetical protein SNOG_06577 [Phaeosphaeria nodorum SN15]
          Length = 255

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 91/174 (52%), Gaps = 23/174 (13%)

Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN-------GLQEHSPMRIILDP 226
           ++G  SK   H LR++ DAIL+G GT +ADDP L CR++          E  P  +++DP
Sbjct: 65  LSGPQSKAMTHYLRSRHDAILIGCGTAIADDPSLNCRIDGVGGYGGAGLEGQPRPVVVDP 124

Query: 227 H--FKLSLDSKIIKTA----------LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274
           +  + +S  SK++K A          + A   I  E    V ++      + ++     D
Sbjct: 125 NGRWDVSDASKVVKLAREGRGKGVWVVSAKGSISEEKKVVVESVGGEAFELEVVEGKM-D 183

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFI---NSRLVDSIILYRSQIVIGEGGI 325
            KK+L +L   G+ S+++EGG AV +  +   N  LVDS+I+  + + +G+GG+
Sbjct: 184 WKKILNVLAKEGIRSVMIEGGGAVINGLLSKENMGLVDSVIVTIAPVWLGKGGV 237


>gi|289582726|ref|YP_003481192.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Natrialba magadii ATCC 43099]
 gi|289532279|gb|ADD06630.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Natrialba magadii ATCC 43099]
          Length = 220

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 100/199 (50%), Gaps = 14/199 (7%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
           H+ +  A+S D  +       + I+G    ++V  LRA SDA++VG+GTVLADDP LT +
Sbjct: 2   HVVVNAAMSADGKLSSRRREQIAISGDADFDRVDRLRADSDAVVVGVGTVLADDPHLTVK 61

Query: 211 LNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
              L++         +P R+++D   +    ++++  A  A   +   +  PV   A   
Sbjct: 62  DENLRDERRTNGKPANPARVVVDSSARTPSSAEVLDDA--ATTYVCVSDAAPVEQRAALA 119

Query: 263 KNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
           ++ ++I    +  DL +    L  +G+  ++VEGG  +  S   + LVD + ++    VI
Sbjct: 120 EHADLITAGEERVDLLRAFAALQEQGIERVMVEGGGELIFSLFEAGLVDDLSVFVGPKVI 179

Query: 321 GEGGIPSPLE-EGYLEKNF 338
           G    P+  + +G++E NF
Sbjct: 180 GGRDAPTLADGDGFVE-NF 197


>gi|300711247|ref|YP_003737061.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halalkalicoccus
           jeotgali B3]
 gi|299124930|gb|ADJ15269.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halalkalicoccus
           jeotgali B3]
          Length = 218

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 94/209 (44%), Gaps = 19/209 (9%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT-- 208
            + +  A S D  +       + I+G    ++V  LRA+SDA++VG+GTVLADDP LT  
Sbjct: 2   DVVVNAATSADGKLSNRRREQIAISGPDDFDRVDDLRAESDAVMVGVGTVLADDPHLTVD 61

Query: 209 -----CRLNGLQEHSPMRIILDPHFKLSLDSKII----KTALLAPVIIVTENDDPVLALA 259
                 R    +   P R++ D   +   D++I+    +T LL      TE    V  L 
Sbjct: 62  ESTSAVRTERGEPPQPARVVADSRARTPPDARILDGVARTYLLVSEAAPTER---VERLE 118

Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
            +   +  +  D  DL+     L   G+  LLVEGG  +  S   + LVD + ++    +
Sbjct: 119 AQDARVITVGDDRVDLEDGFETLATEGIDRLLVEGGGELIFSLFEADLVDELSVFVGPTI 178

Query: 320 IGEGGIPSPLE-----EGYLEKNFMCVRR 343
           IG    P+  +     EG+ E +   V R
Sbjct: 179 IGGREAPTLADGDGFVEGFPELSLESVER 207


>gi|126459735|ref|YP_001056013.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pyrobaculum
           calidifontis JCM 11548]
 gi|126249456|gb|ABO08547.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Pyrobaculum calidifontis JCM 11548]
          Length = 217

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 11/195 (5%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R ++ L  A + D  I  A  G   ++  I   ++H LRA+ DA++VG  T + D+P LT
Sbjct: 2   RPYVYLAAATTLDGRIASA-TGYSRLSCPIDLRRLHELRARVDAVIVGANTAIVDNPRLT 60

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA-FRKKNINI 267
            R   ++  +PMR+++D   K+    ++   +  AP ++ T    P   +   R + + +
Sbjct: 61  VRY--VEGRNPMRVLIDGALKVPTSLRMFDNS--APTLVFTTAKAPAEKIVELRARGVEV 116

Query: 268 IYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
              D    D   +L+ L  RGV  +L+EGG      F++  LVD ++L  +  + G G  
Sbjct: 117 YVADGEKVDPAWVLSTLYQRGVRKVLLEGGGRTNWEFLHRCLVDEVVLTITPYIFGRG-- 174

Query: 326 PSPLE-EGYLEKNFM 339
            S +E EGY  K  M
Sbjct: 175 VSLVEGEGYPTKEDM 189


>gi|289619581|emb|CBI53864.1| unnamed protein product [Sordaria macrospora]
          Length = 302

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 30/208 (14%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           K+  +TL  A S D+ + +A      ++G  SK   H LR++  AILVG+GT +ADDP L
Sbjct: 55  KKPFVTLTFATSLDSSLSLAPGVRTTLSGPQSKAMTHYLRSRHAAILVGVGTAVADDPGL 114

Query: 208 TCRL-------NGLQEHSPMR---IILDP--HFKLSLDSKIIKTAL----LAPVIIVT-- 249
            C++        G++E  P +   IILDP   ++++  SK+I+ A     L P I V   
Sbjct: 115 NCKILSPFVAEAGVREQHPNQPRPIILDPSARWEVNEQSKVIQLARLGQGLGPFIFVAKE 174

Query: 250 ------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
                 E    V ++  +  ++  +  +      +L  +   G+ S+++EGG +V +S +
Sbjct: 175 VSSVSEERRAVVESVGGKFVHVKSVEGEGFAWADVLRAIKKEGLDSVMIEGGGSVINSLL 234

Query: 304 N------SRLVDSIILYRSQIVIGEGGI 325
                    LVDS+I+  +   +G GG+
Sbjct: 235 TLEQGGEQELVDSVIVTIAPTWLGAGGV 262


>gi|303280045|ref|XP_003059315.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459151|gb|EEH56447.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 146

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 86/145 (59%), Gaps = 2/145 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG-RGVTAYGGCPHAEVQALEEAGE 65
           D  +M  AL  +    G T  NP V C++V D   +   G     G PHAEV AL  AG+
Sbjct: 1   DKAYMRRALELAATATGQTHPNPLVGCVVVNDDGDVVGEGYHPKAGEPHAEVFALRAAGD 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            ARGATAYV+LEPC H+GR+PPC++ +++ G+RRVVV   DPD RVSG G++ L   GI 
Sbjct: 61  AARGATAYVSLEPCDHFGRTPPCSRALVDAGVRRVVVGFVDPDPRVSGGGIRTLLDAGIE 120

Query: 126 VDRMMESEGKIFLHA-YLTRQVEKR 149
           V    E      ++A ++ R  +KR
Sbjct: 121 VTVGCEEAACREINADFIARNTKKR 145


>gi|304314445|ref|YP_003849592.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302587904|gb|ADL58279.1| predicted 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 216

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 6/166 (3%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R ++ L  A++ D  I     GS  I+G     +VH LR + DAI+VGI TVLADDP LT
Sbjct: 2   RPYVILNAAMTLDGKIA-TKTGSSEISGEEDLRRVHELRRECDAIMVGINTVLADDPRLT 60

Query: 209 C-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII-VTENDDPVLALAFRKKNIN 266
             R++  +  +P+R+++D   +  L+ +++     AP +I V+E+         RK+   
Sbjct: 61  VHRVDAEEGDNPVRVVVDSRARTPLNFRVLNDE--APTVIGVSESAPASRVNELRKRAEV 118

Query: 267 IIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311
           ++    R +L  LL  L   GV  L++EGG+ + +S +   LVD +
Sbjct: 119 VVAGKERVNLCLLLERLHEMGVRRLMLEGGSTLNYSMLTEGLVDEV 164


>gi|223041133|ref|ZP_03611388.1| riboflavin biosynthesis protein RibD [Campylobacter rectus RM3267]
 gi|222877627|gb|EEF12753.1| riboflavin biosynthesis protein RibD [Campylobacter rectus RM3267]
          Length = 362

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 5/153 (3%)

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           L+  G+  +GA AYVTLEPC+H G++PPCA+ +       VV+   D +   SG G   L
Sbjct: 106 LQNHGDLLKGAKAYVTLEPCAHRGKTPPCAELLRLLKFAEVVIARGDENAVASG-GAHIL 164

Query: 120 SQKGIIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              G+ V   +  +G    +  +L  Q    S   L ++    N + +    S  I+   
Sbjct: 165 QSGGVAVKFDVLRQGADELIEPFLAWQRGNFSFFKLALSA---NGVAVGTAQSKIISNLA 221

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
           S+   H LR+ ++ +++G  TV AD P L  RL
Sbjct: 222 SRTHSHRLRSAAELLVIGGATVRADRPRLDTRL 254


>gi|268323388|emb|CBH36976.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [uncultured archaeon]
          Length = 224

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 90/173 (52%), Gaps = 13/173 (7%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           +R  + +  A+S D  I         I+G + +++V  L+A SDAI+VGIGTVLAD+P L
Sbjct: 2   ERPFVFINAAMSADGKISTVARVQTRISGRVDRDRVDALKAGSDAIMVGIGTVLADNPSL 61

Query: 208 TCRLNGLQE--------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
           T +    QE         +P+RI++D   +  +D++++       +I V++    ++A  
Sbjct: 62  TVKSRKRQEDRKQAERDENPIRIVVDSTARTPIDAEMLSKGSGKRIIAVSKR--AIVADV 119

Query: 260 FR-KKNINIIYCDCRDLKKLLTILVG--RGVTSLLVEGGAAVAHSFINSRLVD 309
            R  +   II C   ++     + +   RGV  L+VEGGA +  S ++  LVD
Sbjct: 120 DRLGEKAEIIVCGREEVDLKKLLDLLWQRGVKRLMVEGGATLNWSLVSQGLVD 172


>gi|238501136|ref|XP_002381802.1| riboflavin biosynthesis protein Rib7, putative [Aspergillus flavus
           NRRL3357]
 gi|220692039|gb|EED48386.1| riboflavin biosynthesis protein Rib7, putative [Aspergillus flavus
           NRRL3357]
          Length = 273

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 33/224 (14%)

Query: 135 KIFLHAYLTRQVEKR------SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + FL  +L    E           TL  A S D+ + +A      ++G  SK   H LR+
Sbjct: 13  RTFLEPHLPPNNEPELPKSNLPFTTLTFATSLDSSLALAPGTRTTLSGPQSKAMTHYLRS 72

Query: 189 QSDAILVGIGTVLADDPELTCRL-------NGLQEHSPMRIILDP--HFKLSLDSKIIKT 239
           + DAIL+G+GT +AD+P L CR+              P  I++DP   +  +  SKI+  
Sbjct: 73  RHDAILIGVGTAVADNPGLNCRIEGVGGYGGEGLLGQPRPIVIDPRARWDFTEQSKILDL 132

Query: 240 AL----LAPVIIVTENDDP-----VLALAFRKKNINI-IYCDCR-----DLKKLLTILVG 284
                  AP II +   +P      L  ++  K I + ++ +       D   +L  L  
Sbjct: 133 VQEGKGRAPFIITSTGTEPAAEKKALLESYGGKFIPLDLFLEEHGERILDWTAVLECLRN 192

Query: 285 RGVTSLLVEGGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI 325
            G+ S+++EGG  V +S +  R   LV+S+I+  +   +G+GG+
Sbjct: 193 EGLRSVMIEGGGTVINSLLEPRWAHLVNSVIVTIAPTWLGQGGV 236


>gi|302673289|ref|XP_003026331.1| hypothetical protein SCHCODRAFT_71199 [Schizophyllum commune H4-8]
 gi|300100013|gb|EFI91428.1| hypothetical protein SCHCODRAFT_71199 [Schizophyllum commune H4-8]
          Length = 273

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 112/259 (43%), Gaps = 37/259 (14%)

Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
           L  Y  +    R  +TL  A S D  I   G   + ++G  S    H +R   DAIL+G+
Sbjct: 15  LAGYDLKHHADRPSVTLTFAQSLDAKIAGTGGKQLILSGKESMIMTHWMRTMHDAILIGV 74

Query: 198 GTVLADDPELTCR---------LNGLQEHS-----PMRIILDPHFKLSLDSKIIKTALLA 243
           GT L DDP+L  R              EH      P  +ILD   +LS   K++      
Sbjct: 75  GTALNDDPQLNARHLPARSPGTYESSSEHGQPYNLPRPVILDARLRLSPSCKLLGNFQSG 134

Query: 244 ----PVIIV---TENDDPVLALAF--RKKNIN-------IIYCDCRD----LKKLLTILV 283
               P +     + + +P+  + +  RK+ +        I+  D  +    ++ LL  L 
Sbjct: 135 TGRRPWVFTLDGSASPNPLQQVEWLERKQALEEAGARVVIVKGDLGNGTLSIQALLKTLH 194

Query: 284 GRGVTSLLVEGGAAVAHSFINSR---LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
            RGV SL+VEGGA+V  SF+++    +VD+II+  +   +GE G+   ++ G     F  
Sbjct: 195 ERGVHSLMVEGGASVIKSFLDASQGGVVDTIIVTVAPTFVGEDGVGYGVQLGESGGKFKH 254

Query: 341 VRRDYFGSDVCLEYIGKNL 359
           V     G D       K+L
Sbjct: 255 VSTQVVGVDTVFVLGPKDL 273


>gi|55377942|ref|YP_135792.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haloarcula
           marismortui ATCC 43049]
 gi|55230667|gb|AAV46086.1| 25-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Haloarcula marismortui ATCC 43049]
          Length = 219

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 90/197 (45%), Gaps = 12/197 (6%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
           H+ +  A+S D  +       + I+G    ++V  LRA SDA++VG+GT+LADDP LT  
Sbjct: 2   HVIVNAAMSVDGKLSSRRREQIAISGPDDFDRVDQLRADSDAVMVGVGTILADDPSLTVD 61

Query: 211 LNGLQE--------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
               +          +P R+I D   +   D+ ++        ++V+E   P        
Sbjct: 62  DADRRAARAERGDPENPARVIADSRIRTPPDATVLD-GRAQTYLLVSEAAPPDFIEEMED 120

Query: 263 KNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
               +I    D  DL   L  L G G+  L+VEGG  +  S +   LVD + +Y    VI
Sbjct: 121 AGAYVIAAGQDRVDLTTTLAKLEGDGIDQLMVEGGGELIFSLLEEALVDELFVYVGPKVI 180

Query: 321 GEGGIPSPLE-EGYLEK 336
           G    P+  + +G++E 
Sbjct: 181 GGRDAPTLADGDGFIED 197


>gi|223994971|ref|XP_002287169.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220976285|gb|EED94612.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 359

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 108/236 (45%), Gaps = 22/236 (9%)

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK---NQVHLLRAQSDAILVGIGT 199
           T ++++ + +TLK+A     + G+A         F S    + VH LR +S A+LVG GT
Sbjct: 113 TSRIKEVTGVTLKMAFDSSPVWGVADLSETKSERFTSPESLDMVHRLRRESSAVLVGRGT 172

Query: 200 VLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
           V  D+  LT R    G  E  P+R++LDP   L   +  I +     V+   ++      
Sbjct: 173 VEYDNCSLTVRRVELGEGEEQPVRVVLDPSLSLLGRNYTIFSDGYPTVVYHLQSGREEEI 232

Query: 258 LAFRKKNI------NIIYCDCRDLKKLLTI--------LVGRGVTSLLVEGGAAVAHSFI 303
               +  +      N I     + K+  T+        L  RG+  ++VEGGAA A +F+
Sbjct: 233 SREERDFVTFVEMPNQISMSTDNDKEQFTLSPQGIIDDLAKRGLNHIMVEGGAATARAFL 292

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-KNFMCVRRDYFGSDVCLEYIGKN 358
           N R VD  IL R+ +   E   P+ ++E  L+      +     GSD+ +EY  +N
Sbjct: 293 NERAVDRAILVRASVEFQEPK-PAQIDEDTLKAAELQMIGTTNMGSDI-VEYWSRN 346


>gi|15790310|ref|NP_280134.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halobacterium
           sp. NRC-1]
 gi|169236043|ref|YP_001689243.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halobacterium
           salinarum R1]
 gi|10580782|gb|AAG19614.1| riboflavin-specific deaminase [Halobacterium sp. NRC-1]
 gi|167727109|emb|CAP13894.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halobacterium
           salinarum R1]
          Length = 220

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 13/188 (6%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
           H+ +  A+S D  +       V ++G     +V  LRA  DA++VG+GTVLADDP LT  
Sbjct: 2   HVVVNAAMSADGKLSTRRREQVTLSGDADFERVDELRASVDAVMVGVGTVLADDPSLTLD 61

Query: 211 LNGL--------QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV---LALA 259
            +G         +   P R++ D H +   D++++  A  A   ++    +PV    +L 
Sbjct: 62  DSGHVAAREERGESPHPARVVADSHARTPPDARLLDGA--AETYVLVAEAEPVEHRESLE 119

Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
                + +   +  DL   L  L  RGV  L+VEGG  +  S     LVD + ++ +  +
Sbjct: 120 AAGATVVVAGENRVDLPSALDALESRGVDRLMVEGGGELIFSLFAEELVDELSVFVAPQL 179

Query: 320 IGEGGIPS 327
           IG    P+
Sbjct: 180 IGGRDAPT 187


>gi|312220526|emb|CBY00467.1| similar to 5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Leptosphaeria maculans]
          Length = 273

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 102/217 (47%), Gaps = 30/217 (13%)

Query: 138 LHAYLTRQVEKRSH----ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAI 193
           +  Y+T Q    SH    +TL  A S D+ + +A      ++G  SK   H LR++ DAI
Sbjct: 17  IDPYIT-QPNHSSHSKPFVTLTFATSLDSQLSLAPGVQTALSGPDSKAMTHYLRSKHDAI 75

Query: 194 LVGIGTVLADDPELTCRL-------NGLQEHSPMRIILDP--HFKLSLDSKIIKTAL--- 241
           L+G+GT +ADDP L CR+           E  P  +I+DP   ++ + +SK+++ A    
Sbjct: 76  LIGVGTAIADDPSLNCRIGGVGGYGGEGLEGQPRPVIIDPKCRWEFTEESKVMRLARERK 135

Query: 242 -LAP-VIIVTENDDPVLALAFRKKNINIIYCD--------CRDLKKLLTILVGRGVTSLL 291
             AP VI  TE  +    +        +  C           +   LL  L    + S++
Sbjct: 136 GKAPWVITQTEMSEGKRRILESVGGKVLAVCSVPALPVTASSEWDDLLKALAREEIRSVM 195

Query: 292 VEGGAAVAHSFI---NSRLVDSIILYRSQIVIGEGGI 325
           +EGG  + +  +   N  LVDS+I+  +   +GEGG+
Sbjct: 196 IEGGGRIINDLLGAKNFNLVDSVIVTIAPTWLGEGGV 232


>gi|237755949|ref|ZP_04584538.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691898|gb|EEP60917.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 221

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 106/218 (48%), Gaps = 15/218 (6%)

Query: 148 KRSHITLKIAVSQDNMIGMA-GCGSVPITGFISKNQ---VHLLRAQSDAILVGIGTVLAD 203
           KR ++ +   V+ D  + ++ G  S  I  F+ +     +H  RA+ D I+VG  T+  D
Sbjct: 2   KRPYVIIVSEVTVDGKLTLSKGVSSKEIMKFMDEEANRYLHETRAKVDGIMVGAETIRTD 61

Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
           +P LT R   +   +P RII      +  D+ I+K    +P IIVT    P   L    +
Sbjct: 62  NPYLTVRY--VSGKNPTRIIPTSTAYIPPDANILKKD--SPTIIVTTEKAPKERLKMLSE 117

Query: 264 NINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            + +I       DL K++ IL  RG+ +L+VEGG+ +  + I + LVD I +     ++G
Sbjct: 118 KVEVIIAGKEEVDLIKMMDILYNRGIRNLMVEGGSTLNWNLIKNGLVDEIRIIHMPFIVG 177

Query: 322 EGGIPSPL-EEGY--LEKNFMCVRRDYF--GSDVCLEY 354
               P+ +  EG+  LE+      R +F  GS +  E+
Sbjct: 178 GTDTPTLVGGEGFKSLEEVVKLKLRAHFMRGSHLITEW 215


>gi|255930967|ref|XP_002557040.1| Pc12g01420 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211581659|emb|CAP79769.1| Pc12g01420 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 277

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 105/222 (47%), Gaps = 31/222 (13%)

Query: 135 KIFLHAYLTRQVEKRSHI-----TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           + FL  +L  Q      +     TL  A S D+ + ++      ++G  SK   H LR++
Sbjct: 16  RAFLEPHLPPQDGSAPQLDLPFTTLTFATSLDSSLALSPGARTVLSGPQSKAMTHYLRSR 75

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEH-------SPMRIILDP--HFKLSLDSKIIKTA 240
            D I++G+GT +ADDP L CR++G+  +        P  +++DP   ++ S DSK+ +  
Sbjct: 76  HDGIVIGVGTAVADDPGLNCRISGVGGYGRPGLDGQPRPVVIDPTARWEFSDDSKLFQLC 135

Query: 241 L----LAPVII--VTENDDPVLALAFRKKNINIIYCDCRD--------LKKLLTILVGRG 286
                 AP II  V + +    AL  R     I     R           +LL  L   G
Sbjct: 136 REGRGRAPWIITAVEKPNAEKQALLERYGGRFIQVKMVRTHTGRHQIVWPELLVTLKSNG 195

Query: 287 VTSLLVEGGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI 325
           + S+++EGG  V  S ++ +   L+DS+I+  +   +GEGG+
Sbjct: 196 LRSVMIEGGGHVIKSLLSPQYMSLLDSVIVTIAPTWLGEGGV 237


>gi|163794376|ref|ZP_02188348.1| bifunctional deaminase-reductase-like protein [alpha
           proteobacterium BAL199]
 gi|159180544|gb|EDP65065.1| bifunctional deaminase-reductase-like protein [alpha
           proteobacterium BAL199]
          Length = 261

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 79/150 (52%), Gaps = 8/150 (5%)

Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233
           + G  + + +H LRA  DA+++G GT + DDP LT R   ++  +P+R++LDP  ++  D
Sbjct: 83  VNGSEALDHLHRLRALVDAVVIGAGTAVDDDPSLTTRR--VEGSNPVRVLLDPSGRVPAD 140

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            K+ +    AP ++      PV   A R           R  + +L  L  RG   +LVE
Sbjct: 141 RKLFRDGQ-APTLVCG----PVRPGAERLDTSGDQETQ-RSPRDVLAALSARGFDIVLVE 194

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GGA  A SF+++R +D + L  +  ++G G
Sbjct: 195 GGAKTASSFLDARCIDRLHLLVAPTLLGSG 224


>gi|169781288|ref|XP_001825107.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Aspergillus
           oryzae RIB40]
 gi|83773849|dbj|BAE63974.1| unnamed protein product [Aspergillus oryzae]
          Length = 273

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 104/224 (46%), Gaps = 33/224 (14%)

Query: 135 KIFLHAYLTRQVEKR------SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + FL  +L    E           TL  A S D+ + +A      ++G  SK   H LR+
Sbjct: 13  RTFLEPHLPPNNEPELPKSNLPFTTLTFATSLDSSLALAPGTRTTLSGPQSKAMTHYLRS 72

Query: 189 QSDAILVGIGTVLADDPELTCRL-------NGLQEHSPMRIILDP--HFKLSLDSKIIKT 239
           + DAIL+G+GT +AD+P L CR+              P  I++DP   +  +  SKI++ 
Sbjct: 73  RHDAILIGVGTAVADNPGLNCRIEGVGGYGGEGLLGQPRPIVIDPRARWDFTEQSKILEL 132

Query: 240 AL----LAPVIIVTENDDP-----VLALAFRKKNINI-IYCDCR-----DLKKLLTILVG 284
                  AP II +   +P      L  ++  K I + ++ +       D   +L  L  
Sbjct: 133 VKEGKGRAPFIITSTGTEPAAEKKALLESYGGKFIPLDLFLEEHGERRLDWTAVLECLRN 192

Query: 285 RGVTSLLVEGGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI 325
            G+ S+++EGG  V +S +    + LV+S+I+  +   +G+GG+
Sbjct: 193 EGLRSVMIEGGGTVINSLLEPGWAHLVNSVIVTIAPTWLGQGGV 236


>gi|171186187|ref|YP_001795106.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermoproteus
           neutrophilus V24Sta]
 gi|170935399|gb|ACB40660.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Thermoproteus neutrophilus V24Sta]
          Length = 217

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 74/145 (51%), Gaps = 7/145 (4%)

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           ++H LRA  DA++VG  T + D+P LT R   ++  +P+R+++D   K   D ++  ++ 
Sbjct: 34  RLHALRAAVDAVIVGANTAIVDNPRLTVRY--VEGRNPLRVLIDGSLKAPTDLRMFDSS- 90

Query: 242 LAPVIIVTENDDP---VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
            +P I+ T    P      L  R   + +   D  D  ++L +L  RGV   L+EGG   
Sbjct: 91  -SPTIVFTTRKAPPEKAAELKARGVEVYVAEGDQVDPAEVLNVLYQRGVRKALLEGGGRT 149

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323
              F++  LVD I+L  +  V G G
Sbjct: 150 NWEFLSKCLVDEIVLTVTPYVFGSG 174


>gi|156031052|ref|XP_001584851.1| hypothetical protein SS1G_14134 [Sclerotinia sclerotiorum 1980]
 gi|154700525|gb|EDO00264.1| hypothetical protein SS1G_14134 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 277

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 108/220 (49%), Gaps = 32/220 (14%)

Query: 151 HITLKIAVSQDNMIG-MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
           + TL  A S D+ I  + G GS PI+G  SK   H LR++ DAIL+G+ T +AD+P L C
Sbjct: 38  YATLTYATSMDSQITILPGIGS-PISGPDSKAMTHYLRSKHDAILIGVNTAIADNPSLNC 96

Query: 210 RLNGLQ--------EHSPMRIILDP--HFKLSLDSKIIKTAL----LAPVIIVTENDDPV 255
           RL G+         +  P  +I+DP   ++   +SKI          AP II  + +  +
Sbjct: 97  RLEGVGGYGGGDTLKGQPRPVIIDPKGRWEFGKESKIFGLVKDGKGKAPWIITAQQESKI 156

Query: 256 LALAFRKKNI------NIIYCDCRDLKK-----LLTILVGRGVTSLLVEGGAAVAHSFI- 303
              + +K+N+        ++    +  K     +L  L    + SL++EGGA + +  + 
Sbjct: 157 ---SSQKRNLLDAAGGKFLFVTTDETGKFSWCDILRALRDEDIESLMIEGGAGIINDMLA 213

Query: 304 -NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
            +  L+ SII+  + + +G+GG+    E    EK  + ++
Sbjct: 214 RSHNLISSIIVTIAPVWLGKGGVVVTPERENREKEALRLK 253


>gi|322380244|ref|ZP_08054465.1| riboflavin-specific deaminase/reductase [Helicobacter suis HS5]
 gi|321147322|gb|EFX42001.1| riboflavin-specific deaminase/reductase [Helicobacter suis HS5]
          Length = 353

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 117/256 (45%), Gaps = 41/256 (16%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
           +P+       M A ++ +     L   NPSVAC+I+ +   ++     +    PHAEV+A
Sbjct: 6   LPLLMLTEILMRACIQHAYKSQTLALPNPSVACMILDQHHNILALQDHSQANTPHAEVRA 65

Query: 60  LEEAGEEA-----------------------------RGATAYVTLEPCSHYGRSPPCAQ 90
           L++A  +                              +  T  VTLEPC+H+G++PPCA 
Sbjct: 66  LKDAYNKLSPTPFPKEINSKDREQTYQFLSKHHNNLFKDCTLLVTLEPCNHFGKTPPCAA 125

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKR 149
            + +   ++V++   +   +  G GL  L + GI ++  ++E EG+  L+ +  + +E++
Sbjct: 126 LLAQIKPKKVIISCLETHKKAMG-GLACLKEAGIEVITGVLEKEGRALLYPF--KCLEQK 182

Query: 150 SHITL-KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
               L KIA+       + G     I+  +S+   H  R+ ++ +++   +V +D P L 
Sbjct: 183 GVFNLFKIALR------LNGSFEGKISEELSQIFTHTQRSIANYLIISGQSVRSDRPTLD 236

Query: 209 CRLNGLQEHSPMRIIL 224
            RL+   +  P   IL
Sbjct: 237 SRLSAYTKRPPNVAIL 252


>gi|303277803|ref|XP_003058195.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460852|gb|EEH58146.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 628

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 131/333 (39%), Gaps = 17/333 (5%)

Query: 23  GLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPC-S 80
           GLT  +P   C L+  DG V+        G   AEV A + A   A G  AY+ LEP   
Sbjct: 75  GLTQPHPKSGCVLVAADGGVVAETFQLGQGGARAEVLAADAANGGAAGGCAYLNLEPVHG 134

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-----------DRM 129
           +          +   G+ RVV+ +  P        +  L  +G+ V           +  
Sbjct: 135 NDAGEDAGVNALHRAGVTRVVIGIAHPIPGTRHAAVDALRARGVHVVVLGDDDLDEREEE 194

Query: 130 MESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
            +  G+   + A L R    R    LK A++ D  I      S  +TG  ++  V   RA
Sbjct: 195 AKQRGEAARNRALLYRVATGRPFSVLKYAMTVDGKIATTSGHSSWVTGPTARGAVWAERA 254

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           +SDA++VG  TV  D+P LT R      H P R++L     L      +     AP I++
Sbjct: 255 RSDAVVVGGSTVRRDNPNLTTRRK--DGHLPARVVLSRTMDLPGPRTNLWDTSEAPTIVM 312

Query: 249 TEND-DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
           T     P      R+  + +I  D      +      RG   L  E G  +A   +N  +
Sbjct: 313 TRTGARPEFQAQLRELGVEVIEFDDLTPSAVAEYCGKRGYLQLFWECGGGLAAPALNDGV 372

Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
           +  ++ + +  +IG  G P+P   G    + M 
Sbjct: 373 IHHVMAFIAPKIIGSSGGPAPSPVGETGLDLMT 405


>gi|189190852|ref|XP_001931765.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187973371|gb|EDU40870.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 242

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 96/201 (47%), Gaps = 26/201 (12%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           ++ +TL  A S D+ + +A      ++G  SK   H LR++ DAIL+G GT +AD+P L 
Sbjct: 39  KTFVTLTFATSLDSQLAIAPGVQTALSGPRSKAMTHFLRSRYDAILIGAGTAIADNPSLN 98

Query: 209 CR-------LNGLQEHSPMRIILDPH--FKLSLDSKIIKTAL----LAPVIIVTEND--D 253
           CR               P  +++DPH  ++ + +SK+++ A      AP I+ + N   D
Sbjct: 99  CRLEGVGGYGGEGLVGQPRPVVVDPHGRWQFNEESKVLRLAKEGKGKAPYIVTSTNPPAD 158

Query: 254 PVLALAFRKKNINIIYCDCRDLKK-------LLTILVGRGVTSLLVEGGAAVAHSFINS- 305
               L         +    RD+ +       +L  L   G+ S+++EGG  V + F+   
Sbjct: 159 RRATLENVGGKFLFLGLSARDVSQAGSSWHIILDALKQEGIGSVMIEGGGFVINDFLGPS 218

Query: 306 ---RLVDSIILYRSQIVIGEG 323
               LV+S+I+  +   +G+G
Sbjct: 219 PAYSLVNSVIVTIAPTWLGKG 239


>gi|322378922|ref|ZP_08053338.1| Riboflavin-specific deaminase / reductase (RibD) [Helicobacter suis
           HS1]
 gi|321148664|gb|EFX43148.1| Riboflavin-specific deaminase / reductase (RibD) [Helicobacter suis
           HS1]
          Length = 353

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 117/256 (45%), Gaps = 41/256 (16%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
           +P+       M A ++ +     L   NPSVAC+I+ +   ++     +    PHAEV+A
Sbjct: 6   LPLLMLTEILMRACIQHAYKSQTLALPNPSVACMILDQHHNILALQDHSQANTPHAEVRA 65

Query: 60  LEEAGEEA-----------------------------RGATAYVTLEPCSHYGRSPPCAQ 90
           L++A  +                              +  T  VTLEPC+H+G++PPCA 
Sbjct: 66  LKDAYNKLSPTPFPKEINSKDREQTYQFLSKHHNNLFKDCTLLVTLEPCNHFGKTPPCAA 125

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKR 149
            + +   ++V++   +   +  G GL  L + GI ++  ++E EG+  L+ +  + +E++
Sbjct: 126 LLAQIKPKKVIISCLETHKKAMG-GLACLKEAGIEVITGVLEKEGRALLYPF--KCLEQK 182

Query: 150 SHITL-KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
               L KIA      + + G     I+  +S+   H  R+ ++ +++   +V +D P L 
Sbjct: 183 GVFNLFKIA------LRLNGSFEGKISEELSQIFTHTQRSIANYLIISGQSVRSDRPTLD 236

Query: 209 CRLNGLQEHSPMRIIL 224
            RL+   +  P   IL
Sbjct: 237 SRLSAYTKRPPNVAIL 252


>gi|224373556|ref|YP_002607928.1| riboflavin biosynthesis protein RibD [Nautilia profundicola AmH]
 gi|223589572|gb|ACM93308.1| riboflavin biosynthesis protein RibD [Nautilia profundicola AmH]
          Length = 325

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 99/220 (45%), Gaps = 45/220 (20%)

Query: 24  LTSTNPSV-ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA------------------- 63
           LT  NP+V A +IVK+ I  G  V    G PHAEV AL EA                   
Sbjct: 23  LTYPNPAVGAAVIVKNQIFTG--VHKKAGEPHAEVHALWEAYRAFHDAPELYTSKEIHEY 80

Query: 64  -GEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
             +   G    A  YVTLEPC+H G++P CA  + E   + V +   DP ++  G G++ 
Sbjct: 81  LKKHHNGFFNDANVYVTLEPCAHEGKTPSCAYLLKELKPKSVSIGWPDP-IKGHGGGVEI 139

Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
           L   GI V  + +      +  ++  Q      +  K+A++ +  I           G+I
Sbjct: 140 LKNSGIDVKILNDKRCFHLIEPFIKWQ---NRFVFYKLALTMNGAI---------TGGYI 187

Query: 179 SKNQ----VHLLRAQSDAILVGIGTVLADDPELTC-RLNG 213
           S ++    VH +R + D +++G  TV  D P L   R+NG
Sbjct: 188 SSDESLDWVHNIRDKIDLLVIGGNTVRIDRPTLDARRVNG 227


>gi|85108193|ref|XP_962526.1| hypothetical protein NCU08313 [Neurospora crassa OR74A]
 gi|28924134|gb|EAA33290.1| hypothetical protein NCU08313 [Neurospora crassa OR74A]
          Length = 321

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 101/225 (44%), Gaps = 47/225 (20%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           KR  +TL  A S D+ + +A      ++G  SK   H LR++  AILVG+GT +ADDP L
Sbjct: 57  KRPFVTLTFATSLDSSLSLAPGVRTTLSGPQSKAMTHFLRSRHAAILVGVGTAVADDPGL 116

Query: 208 TCRL------------NGLQEHSPMR---IILDP--HFKLSLDSKIIKTAL----LAPVI 246
            C++            NG +E  P +   IILDP   +++S  SK+I+ A     L P I
Sbjct: 117 NCKILSPLSSSPDGVGNGKREQHPNQPRPIILDPSARWEVSEKSKVIQLARLKQGLGPFI 176

Query: 247 IVTENDDPV--------------------LALAFRKKNINIIYCDCRDLKKLLTILVGRG 286
              +  + V                    L +    K       +      +L  +   G
Sbjct: 177 FTAKKVEEVPEERRAVVEGIGGKYVRVEGLKVKGEGKGEGATSRESFAWVDVLRTIKEEG 236

Query: 287 VTSLLVEGGAAVAHSFIN------SRLVDSIILYRSQIVIGEGGI 325
           + S+++EGG +V +S ++        LVDS+I+  +   +G GG+
Sbjct: 237 LDSVMIEGGGSVINSLLSLEQAGEQELVDSVIVTIAPTWLGAGGV 281


>gi|188996174|ref|YP_001930425.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931241|gb|ACD65871.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 221

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 107/218 (49%), Gaps = 15/218 (6%)

Query: 148 KRSHITLKIAVSQDNMIGMA-GCGSVPITGFISKNQ---VHLLRAQSDAILVGIGTVLAD 203
           KR ++ +   V+ D  + ++ G  S  I  F+ +     +H  RA+ D I+VG  T+  D
Sbjct: 2   KRPYVIIVSEVTVDGKLTLSKGVSSKEIMKFMDEEANRYLHETRAKVDGIMVGAETIRTD 61

Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
           +P LT R   +   +P RII      + LD+ I+K    +P IIVT    P   +    +
Sbjct: 62  NPYLTVRY--VSGKNPTRIIPTSTADIPLDANILKKD--SPTIIVTTEKAPEERVKALSE 117

Query: 264 NINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            + +I       DL K++ IL  +G+ +L+VEGG+ +  + I + LVD I +     ++G
Sbjct: 118 KVEVIVAGKEEVDLIKMMDILYNKGIRNLMVEGGSTLNWNLIKNGLVDEIRIIHMPFIVG 177

Query: 322 EGGIPSPL-EEGY--LEKNFMCVRRDYF--GSDVCLEY 354
               P+ +  EG+  LE+      R +F  GS +  E+
Sbjct: 178 GTDTPTLVGGEGFKSLEEVVKLKLRAHFMRGSHLITEW 215


>gi|297618676|ref|YP_003706781.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanococcus voltae A3]
 gi|297377653|gb|ADI35808.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanococcus voltae A3]
          Length = 235

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 105/211 (49%), Gaps = 25/211 (11%)

Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-SPMRIILDPHFKLSL 232
           I+G     +VH +R   DAI+VGIGTVL D+P+LT     L+ + +P+RI++D + ++ L
Sbjct: 26  ISGENDLKRVHQIRKDVDAIMVGIGTVLKDNPKLTIHKIPLENNKNPVRIVVDSNLRIPL 85

Query: 233 DSKIIKTALLAPVIIVT------ENDDPVLALAFRK-----KNINIIYCDCRDLKKLLTI 281
           DS+++     A  +I T      E  + +  +   K     +N+ IIY    +LK  L +
Sbjct: 86  DSRVLNED--AKTVIATTEYGSLEQSEKIKRIEKIKELESIENVEIIYSG--NLKVDLEL 141

Query: 282 LVGR----GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
           L+G+     + S+L+EGG  +        LVD + +Y +  + G    P+ ++    +  
Sbjct: 142 LMGKLSKMDIKSILLEGGGTLNWGMFEKNLVDEVRVYVAPKIFGGSNAPTYVDGDGFKTL 201

Query: 338 FMCVRR---DYFGSD--VCLEYIGKNLCLQE 363
             CV     DY+  D  + LEY  K    QE
Sbjct: 202 EDCVNLELIDYYQMDEGIVLEYFIKKDNNQE 232


>gi|291276854|ref|YP_003516626.1| putative priboflavin-specific deaminase [Helicobacter mustelae
           12198]
 gi|290964048|emb|CBG39888.1| putative priboflavin-specific deaminase [Helicobacter mustelae
           12198]
          Length = 345

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 100/232 (43%), Gaps = 39/232 (16%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA----- 63
            MS  ++ +     LT  NP+VA ++V  +G ++        G PHAEV +L+EA     
Sbjct: 7   LMSLCIKKAWEFQTLTLPNPAVAAMVVSGEGEILSLCAHQKSGAPHAEVLSLKEAYYKLT 66

Query: 64  -GEEARGATA---------------------YVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
             E  +  T                      YVTLEPC+ YG++PPCA+ +   GI+ V+
Sbjct: 67  KDENIKNITNSQELHQILRNHHQNLFKDCSIYVTLEPCTCYGKTPPCAEILQSIGIKSVI 126

Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVS 159
           +   +      G+ +  L + G  +  R++E E +  L  +L  Q ++R S   L   + 
Sbjct: 127 IGALESTKNQGGKEM--LEKSGARVTARILEKECQDLLLPFLCYQKKQRFSLFKLATRLD 184

Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
            D   G   C    I    + NQ    R+  D I V   T+  D+P L  R 
Sbjct: 185 GDYKSGSISCSEAKI---FTHNQ----RSVCDKIFVSQNTLRNDNPLLDARF 229


>gi|284176227|ref|YP_003406504.1| 2,5-diamino-6-hydroxy-4-(5- phosphoribosylamino)pyrimidine
           1-reductase [Haloterrigena turkmenica DSM 5511]
 gi|284017884|gb|ADB63831.1| 2,5-diamino-6-hydroxy-4-(5- phosphoribosylamino)pyrimidine
           1-reductase [Haloterrigena turkmenica DSM 5511]
          Length = 220

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 13/197 (6%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC- 209
           H+ +  A S D  +       + I+G     +V  LRA SDA++VG+GTVLADDP LT  
Sbjct: 2   HVVVNAATSADGKLSSRRREQIAISGEADFERVDRLRAYSDAVVVGVGTVLADDPHLTVK 61

Query: 210 -------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
                  RL   +   P R+++D   +   D+ ++  A  A   +      PV +     
Sbjct: 62  DESLCDERLERGEPKQPARVVVDSKGRTPTDAAVLDDA--ATTYVCLSEAAPVGSRMDLV 119

Query: 263 KNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
            +  ++    D  DL +    L  +G+  ++VEGG  +  S   + LVD + L+    VI
Sbjct: 120 DHAELVTAGNDRVDLLRAFAALEEQGLERIMVEGGGELIFSLFEAGLVDELRLFVGPKVI 179

Query: 321 GEGGIPSPLE-EGYLEK 336
           G    P+  + EG++E+
Sbjct: 180 GGRDAPTLADGEGFVEE 196


>gi|114793489|pdb|2AZN|A Chain A, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)-
           Pyrimidinone 5-Phosphate Reductase
 gi|114793490|pdb|2AZN|B Chain B, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)-
           Pyrimidinone 5-Phosphate Reductase
 gi|114793491|pdb|2AZN|C Chain C, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)-
           Pyrimidinone 5-Phosphate Reductase
 gi|114793492|pdb|2AZN|D Chain D, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)-
           Pyrimidinone 5-Phosphate Reductase
 gi|114793493|pdb|2AZN|E Chain E, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)-
           Pyrimidinone 5-Phosphate Reductase
 gi|114793494|pdb|2AZN|F Chain F, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)-
           Pyrimidinone 5-Phosphate Reductase
          Length = 219

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 18/163 (11%)

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +VH +RA  D I VGIGTVL DDP LT       + +P+RI++D   ++ L+++++    
Sbjct: 35  RVHKIRANVDGIXVGIGTVLKDDPRLTVH-KIKSDRNPVRIVVDSKLRVPLNARVLNKD- 92

Query: 242 LAPVIIVTENDDPVLALAFRKKNINII------YCDCR----DLKKLLTILVGRGVTSLL 291
            A  II T  D        ++K I I+         C     DLKKL  IL  +G+ S+L
Sbjct: 93  -AKTIIATTED----TNEEKEKKIKILEDXGVEVVKCGRGKVDLKKLXDILYDKGIKSIL 147

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGY 333
           +EGG  +        LVD + +Y +  + G    P+ ++ EG+
Sbjct: 148 LEGGGTLNWGXFKEGLVDEVSVYIAPKIFGGKEAPTYVDGEGF 190


>gi|92113300|ref|YP_573228.1| bifunctional deaminase-reductase-like protein [Chromohalobacter
           salexigens DSM 3043]
 gi|91796390|gb|ABE58529.1| bifunctional deaminase-reductase-like protein [Chromohalobacter
           salexigens DSM 3043]
          Length = 283

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 7/171 (4%)

Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214
           ++  S D  I      S  +TG  S+  +H LRA  DA+L+G GT  ADDP L+ R   +
Sbjct: 77  QLGQSLDGRIATVSGASHYVTGEASRVHLHRLRALVDAVLIGAGTACADDPRLSVR--HV 134

Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274
             H+P+R+ILDP+ ++     + +    AP + +T +  P  AL         +  D  D
Sbjct: 135 SGHNPVRVILDPNGRVPATQGVFQND-EAPTLHITRHPLPRGALGAHVD--TCVVEDAAD 191

Query: 275 LK--KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           L    L   L  RG+  +LVEGG      F+    +D + +  + ++IG G
Sbjct: 192 LTPAALCRTLAARGLRRVLVEGGGQTVSRFLADGELDRLHVVVAPLLIGSG 242


>gi|312136821|ref|YP_004004158.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3h)-one reductase
           [Methanothermus fervidus DSM 2088]
 gi|311224540|gb|ADP77396.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Methanothermus fervidus DSM 2088]
          Length = 227

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 111/215 (51%), Gaps = 13/215 (6%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R ++ L  A++ D  I      S  I+G     +VH LR + D I+VGI TV+ DDP LT
Sbjct: 13  RPYVILNAAMTLDGKIATKTYDS-KISGEEDLIRVHKLRKECDGIMVGINTVIIDDPRLT 71

Query: 209 C-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII-VTE--NDDPVLALAFRKKN 264
             ++N     +P+R+I D   +  L+++++     AP +I V+E   ++ V  L  R K 
Sbjct: 72  VHKINSKPSDNPVRVIADSRARTPLNARVLNNE--APTVIAVSEKAKNEKVEKLKKRAK- 128

Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           + ++  +  DL  L+  L   G+  L++EGG+ +  S ++  LVD + +  + +++G   
Sbjct: 129 VLVLGKERVDLVALMEKLKDMGINKLMLEGGSTLNFSMLSKGLVDEVRVCVAPMIVGGKD 188

Query: 325 IPSPLEEGYLEKNFMCVR---RDYF--GSDVCLEY 354
             + ++    EK    ++   + Y+  G D+ LEY
Sbjct: 189 AKTLVDGPGFEKMDEAIKLKLKKYYTLGKDLILEY 223


>gi|330506465|ref|YP_004382893.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Methanosaeta
           concilii GP-6]
 gi|328927273|gb|AEB67075.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Methanosaeta
           concilii GP-6]
          Length = 220

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 79/172 (45%), Gaps = 14/172 (8%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
            R  + +  A+S D  I       + I+G     +V  LRA SDAI+VG+GTVLADDP L
Sbjct: 2   NRPFVFINSAMSADGKISSRDRRQIRISGKEDLMRVDELRAASDAIMVGVGTVLADDPGL 61

Query: 208 TCRLNGLQE--------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
             +   L+E          P RI+ D + +   ++KI+        +I      P   L 
Sbjct: 62  RVKSRILREKRKDMGQLKEPFRIVADSNARTPANAKILGPG----CMIAVSYSAPEERLD 117

Query: 260 FRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
             +    II C     DL  L+  L  RGV  L+VEGGA +  S I   LVD
Sbjct: 118 RLRSGCEIIKCGTEMVDLPGLMEELYNRGVRRLMVEGGARLNWSLIELGLVD 169


>gi|154148617|ref|YP_001405744.1| riboflavin biosynthesis protein RibD [Campylobacter hominis ATCC
           BAA-381]
 gi|153804626|gb|ABS51633.1| riboflavin biosynthesis protein RibD [Campylobacter hominis ATCC
           BAA-381]
          Length = 362

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 82/153 (53%), Gaps = 8/153 (5%)

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           ++   ++ +G   +VTLEPCSH G++PPCA  I     +  V+   D +   SG G   L
Sbjct: 104 IKNHADKLKGGKIFVTLEPCSHLGKTPPCANLISALKFKDCVIGAKDENKIASG-GAYIL 162

Query: 120 SQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
           ++ G+ V   + ++E +I +  +   Q   +  +  K+A+S +   G+A CG + I+   
Sbjct: 163 NKNGVNVKLGVCKNEAEILISPFKKWQKNGK-FVFFKLALSAN---GVA-CGGI-ISNEK 216

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
           S+   H LRA SD +++G  TV  D P+L  RL
Sbjct: 217 SRIFSHKLRAISDLLIIGGNTVRTDRPKLDTRL 249


>gi|310815143|ref|YP_003963107.1| riboflavin biosynthesis protein RibD [Ketogulonicigenium vulgare
           Y25]
 gi|308753878|gb|ADO41807.1| riboflavin biosynthesis protein RibD [Ketogulonicigenium vulgare
           Y25]
          Length = 324

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 101/223 (45%), Gaps = 27/223 (12%)

Query: 23  GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEP 78
           G T+ NP V C I+   G V+        G  HAE  A+      G   +  T  VTLEP
Sbjct: 26  GATAPNPPVGCAILDSKGAVLAVAAHQKAGSAHAEALAIAACRAAGTYDQIDTFVVTLEP 85

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD--RMMESEG-- 134
           C+H+GR+ PC   I++   RRV +   DP+ RV+G G   L   G+ V   + +   G  
Sbjct: 86  CNHHGRTAPCTDAILQTPARRVFIGARDPNPRVAGGGTARLRAAGLAVYDWQALGMAGTC 145

Query: 135 -----KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG---FISKNQV--- 183
                   +  +  R +  R  IT+K  V        AG   +P  G   F  ++ +   
Sbjct: 146 TGIGADALIAPFRKRVLTGRPWITVKQVVD-------AGGSMIPPAGRKTFARQSSLELA 198

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILD 225
           H +R +++ I+ G GTVLAD P  T R L    +H    ++LD
Sbjct: 199 HAMRRRAEVIVTGAGTVLADWPLFTVRHLADFPDHRRALVVLD 241


>gi|225849717|ref|YP_002729951.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
           [Persephonella marina EX-H1]
 gi|225645135|gb|ACO03321.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
           [Persephonella marina EX-H1]
          Length = 221

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 77/147 (52%), Gaps = 6/147 (4%)

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           +H LRA+ D I+VG  T+  D+P LT R   ++  +P RI+      + LD+ I++    
Sbjct: 41  LHELRAKVDGIMVGAETIRTDNPFLTVRY--VEGKNPTRIVPTSKADIPLDANILEKH-- 96

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
           AP IIVT    P   +   K+ + +I    D  DL +++  L  +G+ +L+VEGG+ +  
Sbjct: 97  APTIIVTSESAPEEKVKALKEKVEVIISGKDQVDLIEMMDTLYRKGIKTLMVEGGSTLNW 156

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS 327
           + I   LVD I L     ++G    P+
Sbjct: 157 NLIKFGLVDEIRLIHMPFIVGGEDTPT 183


>gi|257460844|ref|ZP_05625945.1| riboflavin biosynthesis protein RibD [Campylobacter gracilis
           RM3268]
 gi|257442175|gb|EEV17317.1| riboflavin biosynthesis protein RibD [Campylobacter gracilis
           RM3268]
          Length = 407

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 122/301 (40%), Gaps = 67/301 (22%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA------ 59
           D  +M  ALR +  +  LT  NP+V C+++ + G V+G G     G  HAE  A      
Sbjct: 3   DEFYMDLALRAAWRYQALTLPNPAVGCVLLDRGGRVLGIGAHKKAGFLHAEANAVFAALC 62

Query: 60  ------------------------------------------LEEAGEEARGATAYVTLE 77
                                                     L   G   RGA AYVTLE
Sbjct: 63  DLDVNFAQDFACEYAREFGVKFQNLEALKSALLQPSFAYDFILNRHGGLLRGACAYVTLE 122

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV--DRMMESEGK 135
           PC+H G++P CA+ + + G+ RVV+   D + + +G G + L +  I +  D    +  +
Sbjct: 123 PCAHRGKTPSCAELLAQLGLSRVVIGARDTNAQAAG-GAEILRRGSIEIKFDVCHAAAEE 181

Query: 136 IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195
           +    YL R+        +KI  +      + G     I     +  VH LR+  D + V
Sbjct: 182 LAEPFYLARE---SGFCFIKINAT------LNGAAHGRIGSEKQRVFVHELRSVCDYVGV 232

Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
           G  TV AD P L  R     E S +   +D   K  LD+++ K   L  +  +T + D +
Sbjct: 233 GGQTVRADRPTLDVRAAKFDEISALVGSVD---KPLLDTRVAK---LGEIGTLTNSTDKL 286

Query: 256 L 256
           +
Sbjct: 287 I 287


>gi|126732575|ref|ZP_01748373.1| riboflavin biosynthesis protein RibD [Sagittula stellata E-37]
 gi|126707021|gb|EBA06089.1| riboflavin biosynthesis protein RibD [Sagittula stellata E-37]
          Length = 198

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 78/159 (49%), Gaps = 6/159 (3%)

Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233
           ITG  +++ VH LRA  DA+LVG GT  AD+P LT R    +   P+RI+   H  L L 
Sbjct: 4   ITGPEARHAVHALRATHDAVLVGGGTARADNPRLTVRGYD-RSRPPVRIVASRHLDLPLL 62

Query: 234 SKIIKTALLAPVIIVTEND---DPVLAL-AFRKKNINIIYCDCR-DLKKLLTILVGRGVT 288
           S + +TA   PV +    D   D V A      + + +     R D   LL +L   G+T
Sbjct: 63  SDLARTAKDVPVWLCHGADARGDLVTAWEGIGARLMTVPLAGGRLDAAALLKVLGQEGLT 122

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
            +  EGG  +A S +   LVD + +  + + +G  G P 
Sbjct: 123 RVFCEGGGQLAASLLAQDLVDELHVLTAGLALGAEGHPG 161


>gi|292655495|ref|YP_003535392.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Haloferax
           volcanii DS2]
 gi|291371668|gb|ADE03895.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Haloferax
           volcanii DS2]
          Length = 219

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 81/187 (43%), Gaps = 11/187 (5%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
           H+ +  A S D  +       V I+G     +V  +RA +DA+ VG+GTVLADDP LT  
Sbjct: 2   HVHVNAAASLDGKLSSRRREQVTISGDDDFARVDEIRATADAVAVGVGTVLADDPHLTLD 61

Query: 211 LNGL--------QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
             GL            P R++ D   +   D++I+  A     ++V+E        A   
Sbjct: 62  DPGLVAAREDRGDSPHPARVVADSRARTPTDARILDDAATT-YLLVSEAAPGGRREALEA 120

Query: 263 KNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
               ++        L      L  RGV  L+VEGG  +  S   + LVD + LY   +VI
Sbjct: 121 AGAELVVAGAERVSLPDAFDALEARGVDRLMVEGGGELIFSLFEAGLVDELTLYVGSLVI 180

Query: 321 GEGGIPS 327
           G    P+
Sbjct: 181 GGRDAPT 187


>gi|119871899|ref|YP_929906.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pyrobaculum
           islandicum DSM 4184]
 gi|119673307|gb|ABL87563.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Pyrobaculum islandicum DSM 4184]
          Length = 217

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 7/146 (4%)

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            ++H +RA  DAI+VG  T + D+P LT R   ++  +PMR+++D   +  L  +I  ++
Sbjct: 33  KRLHSIRASVDAIIVGANTAIVDNPRLTVRY--VEGKNPMRVLIDGALRAPLTLRIFDSS 90

Query: 241 LLAPVIIVTENDDP---VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
             AP ++ T +  P   +  L  R   I I   +  D   +L  L  +GV  +L+EGG  
Sbjct: 91  --APTVVFTTHKAPQDKIHELQKRGVKIYITEGETVDPAYVLDTLYKQGVRKVLLEGGGR 148

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323
               F++  LVD IIL  +  V G G
Sbjct: 149 TNWEFLSKCLVDEIILTVTPYVFGRG 174


>gi|298707242|emb|CBJ25869.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 408

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 92/222 (41%), Gaps = 69/222 (31%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR- 210
           +TLK+A+ ++  +     G    T   S + VH +R   +A+LVG+GTV+ DDP LT R 
Sbjct: 149 VTLKLAMDRNGAVDDMSEGPKRFTSPASLDAVHRIRRDCEAVLVGVGTVVRDDPSLTVRR 208

Query: 211 --LNGLQEHSPMRIILDPHFK-------------------------------------LS 231
             LNG Q   P R++LD   +                                     L 
Sbjct: 209 VPLNGGQTRQPTRVVLDRTLRLTGAQAGQNPRAILRDGHSSLVFYSAGCEDTEARAAELK 268

Query: 232 LDSKIIKTAL---------------LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276
            D K  +TA+               LAPV  V         +  ++    +      DL 
Sbjct: 269 ADVKRSRTAVSDSPGETEPDTSHQKLAPVDFV--------GMPVQRPGAGV------DLS 314

Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
            +L  L+ RG+  +LVEGG +VA  F++ RLVD  I+ R+ +
Sbjct: 315 GVLGALLERGIDHVLVEGGPSVARGFLSERLVDRAIIIRAPM 356


>gi|50287537|ref|XP_446198.1| hypothetical protein [Candida glabrata CBS 138]
 gi|54036256|sp|Q6FU96|RIB7_CANGA RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|49525505|emb|CAG59122.1| unnamed protein product [Candida glabrata]
          Length = 244

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 98/216 (45%), Gaps = 26/216 (12%)

Query: 137 FLHAYLTR-QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195
           FL  YL       R  +TL  A S D  I         I+   +K   H LR   D IL+
Sbjct: 11  FLKNYLPDGHRNGRPFVTLTYAQSIDAKIAKQRGVRTTISHIETKEMTHYLRYFHDGILI 70

Query: 196 GIGTVLADDPELTCRLNG--------LQEHSPMRIILDPHFKLSLD----SKIIKTALLA 243
           G GTVLADDP L C+  G        ++E SP  IILDP  K         ++    +  
Sbjct: 71  GSGTVLADDPGLNCKWIGPNNDPDESMEEKSPRPIILDPKLKWKYSGSKMEELCNQGMGK 130

Query: 244 PVIIVTENDDPVLALAFRKKNIN--IIYCDCRD---LKKLL-TILVGRGVTSLLVEGGAA 297
           P I++T     V     ++ N+   I+  D  D    K +L T+     + S+++EGG+ 
Sbjct: 131 PPIVITTKTPKV-----KEANVEYMIMEPDANDRISWKSILDTLRRNYDMKSVMIEGGSH 185

Query: 298 VAHSFIN-SRLVDSIILYRSQIVIGEGGIP-SPLEE 331
           V +  +  S L+DS+I+    I +G  G+  SP +E
Sbjct: 186 VINQLLMCSDLIDSLIVTIGSIYLGSEGVTVSPPDE 221


>gi|289548666|ref|YP_003473654.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p
           yrimidine1-reductase [Thermocrinis albus DSM 14484]
 gi|289182283|gb|ADC89527.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p
           yrimidine1-reductase [Thermocrinis albus DSM 14484]
          Length = 220

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 89/170 (52%), Gaps = 10/170 (5%)

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           +H +RA+ D I+VG  TV  D+P LT R   ++  +P+R+I      + LD+ I      
Sbjct: 40  LHEIRAKVDGIMVGCETVRTDNPSLTVRY--VEGKNPIRVIPCSTANVPLDANIFSKD-- 95

Query: 243 APVIIVTENDDPVLALAFRKK---NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           AP IIVT    P   +   ++    + ++  D  D  KL+ +L  RG+ SL+VEGGA++ 
Sbjct: 96  APTIIVTTLRAPEERIQRIRELGAEVWVVGEDLVDFDKLMPLLYERGIKSLMVEGGASIN 155

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPL-EEGYLE-KNFMCVR-RDYF 346
              I    VD I L    +V+G   +P+ +  EG+   KN + +R R +F
Sbjct: 156 WELIKRGYVDEIRLIHLPVVVGGENVPTLVGGEGFKSLKNLLHLRLRAHF 205


>gi|307720625|ref|YP_003891765.1| riboflavin biosynthesis protein RibD [Sulfurimonas autotrophica DSM
           16294]
 gi|306978718|gb|ADN08753.1| riboflavin biosynthesis protein RibD [Sulfurimonas autotrophica DSM
           16294]
          Length = 339

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 98/230 (42%), Gaps = 35/230 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEA- 67
           +M+ A+  +  + GLT  NP+V C IV + G ++        G PHAEV A++ A  +  
Sbjct: 8   YMNLAISEAWKYQGLTYANPAVGCSIVGEHGELLAVEAHHKAGEPHAEVNAIKAAYYKLT 67

Query: 68  --------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                                     +  + Y TLEPCSH G++P CA  I E GI+ V 
Sbjct: 68  QDEKILQLISSSQIHIYLLQNHNNIFKKCSLYSTLEPCSHVGKTPSCANLIAELGIKNVF 127

Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           V V+D +   +  G   L + G  +   +E + K     +  ++      +  K A    
Sbjct: 128 VGVEDFNTD-AANGNTVLEKSGANISLHVEQQ-KCEDLLFPFKKFMSDKFVFFKWA---Q 182

Query: 162 NMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
            + G    G   I+   S+  VH +R   D +++G  TV  D P L  RL
Sbjct: 183 RLNGTTDAG--IISSAESRKNVHAMRDVCDLLVIGGNTVRNDRPTLDARL 230


>gi|328848151|gb|EGF97399.1| hypothetical protein MELLADRAFT_79837 [Melampsora larici-populina
           98AG31]
          Length = 269

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 106/244 (43%), Gaps = 26/244 (10%)

Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
            H  L   + +R  +TL  A S D  I       + ++G  S    H++R + D ILVGI
Sbjct: 27  FHQNLNHDLSRRPFVTLTYAQSLDGKIAGVDGRQLRLSGNQSMKMTHMMRTRHDGILVGI 86

Query: 198 GTVLADDPELTCRLNGLQ---EHSPMRIILDPHFKLSLDSKIIKTA---------LLAPV 245
           GT+L DDP+LT R        E+ P  I+LD   +  +D K+IK           L+   
Sbjct: 87  GTLLNDDPQLTARNLSFTVPLENQPQPIVLDTRLRTPIDCKLIKNYRNQTGKQPWLICAR 146

Query: 246 IIVTENDDPVLALAFRK----KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            +++  D   L  A  +     N         DL+K+  +    G+  L++EGG+++  S
Sbjct: 147 SMISSQDRQSLEEAGARVIPITNGMNPSNQGLDLEKVFEVCKINGINRLMIEGGSSIISS 206

Query: 302 FINSR----LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR---DYFGSDVCLEY 354
            +N      +++ +++  S  ++GEG     ++   ++     +R       GSD    Y
Sbjct: 207 CLNYTGDHPILNILVVTVSPYMVGEGLT---VKTSNIDSRLSLLRHIQTKILGSDAVFAY 263

Query: 355 IGKN 358
              N
Sbjct: 264 TSSN 267


>gi|257051630|ref|YP_003129463.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halorhabdus
           utahensis DSM 12940]
 gi|256690393|gb|ACV10730.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p
           yrimidine1-reductase [Halorhabdus utahensis DSM 12940]
          Length = 220

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 91/198 (45%), Gaps = 16/198 (8%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC- 209
           H+ +  A+S D  +       V I+G    ++V  LRA SDA++VG+GTVLADDP LT  
Sbjct: 2   HVVVNAAMSADGKLSTHDREQVAISGEADFDRVDGLRADSDAVMVGVGTVLADDPSLTVD 61

Query: 210 -------RLNGLQEHSPMRIILDPHFKLSLDSKII----KTALLAPVIIVTENDDPVLAL 258
                  R +      P R++ D   +   D++I+    +T L+      TE    V  L
Sbjct: 62  DPDRIAQRGDRGDPPQPARVVADSRARTPPDAQILDDEAETYLVVGERAATEK---VERL 118

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
                 +     D  DL   L  L   G+  L+VEGG  +  S     LVD + ++   +
Sbjct: 119 ESTGATVIAAGHDRVDLSAGLDALESHGIDRLMVEGGGELIFSLFADDLVDELSVFVGPM 178

Query: 319 VIGEGGIPSPLE-EGYLE 335
           +IG    P+  + +G+LE
Sbjct: 179 LIGGRDAPTLADGDGFLE 196


>gi|289803145|ref|ZP_06533774.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 189

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 71/141 (50%), Gaps = 12/141 (8%)

Query: 110 RVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG 168
           +V+GRGL  L Q GI V   +M SE +     +L R      ++ LK+  S D    MA 
Sbjct: 2   QVAGRGLYRLQQAGIAVSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMAS 61

Query: 169 CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH-- 217
             S  IT   ++  V  LRAQS AIL    TVLADDP LT R   L         QE+  
Sbjct: 62  GESQWITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLR 121

Query: 218 SPMRIILDPHFKLSLDSKIIK 238
            P+RI++D   +++   +I++
Sbjct: 122 QPVRIVIDSQNRVTPAHRIVQ 142


>gi|325294796|ref|YP_004281310.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine
           1-reductase [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065244|gb|ADY73251.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine
           1-reductase [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 220

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 13/204 (6%)

Query: 148 KRSHITLKIAVSQDNMIGMA-GCGSVPITGFI---SKNQVHLLRAQSDAILVGIGTVLAD 203
           +R ++ +   V+ D  + +A G  S  I   +   +   +H +RA+ D I+VG  T+  D
Sbjct: 2   ERPYVIIVSEVTIDGKLTLAKGVSSKEIMKLMDEEANKYLHQIRAECDGIMVGANTIRID 61

Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL-AFRK 262
           +P LT R   ++  +P RII      + LD+ I+ T + AP +I      P   +   ++
Sbjct: 62  NPNLTVRY--VKGKNPTRIIPVSTGDIPLDANILNTEV-APTVIAVSKKAPAEKIEKLKE 118

Query: 263 KNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
           K + +I       D  +L + L   G+  L+VEGG+ V    I + L+D I L    +V+
Sbjct: 119 KGVQVIVAGNEKVDFAELFSKLYEMGIRKLMVEGGSKVNWELIKNDLIDEIRLIHLPVVV 178

Query: 321 GEGGIPSPLE-EGYLEKNFMCVRR 343
           G   +PS +  EG+  K    V+R
Sbjct: 179 GGDDVPSLVSGEGF--KTLDAVKR 200


>gi|163782963|ref|ZP_02177958.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881643|gb|EDP75152.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 223

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 108/220 (49%), Gaps = 13/220 (5%)

Query: 146 VEKRSHITLKIAVSQDNMIGM-AGCGSVPITGFISKNQ---VHLLRAQSDAILVGIGTVL 201
           +E+R ++ +   VS D  + +  G  S  +   + +     +H +RA+ D I+VG  TV 
Sbjct: 2   MEQRPYVIIVSEVSIDGKLTLYRGASSKELMSLMDEEAYRYLHEIRAKVDGIMVGCETVR 61

Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
            D+P LT R   ++  +P RII      + LD+ ++ T     +I  TE  D        
Sbjct: 62  TDNPSLTVRY--VKGKNPTRIIPCSTANVPLDANVLNTEDAPTIIATTERADKERVKKIE 119

Query: 262 KKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
           +K   ++    +  D   LL  L   G+ +L+VEGGA++   F+  + VD I L    ++
Sbjct: 120 EKGAKVVVAGDELVDFDLLLPKLYEMGIKTLMVEGGASINWEFVRRKKVDEIRLIHLPVI 179

Query: 320 IGEGGIPSPL-EEGYLE-KNFMCVR-RDYF--GSDVCLEY 354
           +G   +P+ +  EG+ + K+ + +R R +F  G+ +  E+
Sbjct: 180 VGGENVPTLVGGEGFKKLKDILHLRLRSHFKRGNQLITEW 219


>gi|150399410|ref|YP_001323177.1| bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Methanococcus vannielii SB]
 gi|150012113|gb|ABR54565.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanococcus vannielii SB]
          Length = 357

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 116/240 (48%), Gaps = 27/240 (11%)

Query: 138 LHAYLTRQVEKRS--------HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           ++AY++R+V+           H+   + ++ D  +      S  I+      +VH LR +
Sbjct: 120 IYAYISRRVDIMPNFDDMLLPHVISNVGMTLDGKLATVSNDS-RISSENDLKRVHELRKE 178

Query: 190 SDAILVGIGTVLADDPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
            D ILVGIGT+L DDP LT  ++  + + +P+RI++D   ++ + ++++ +   A  II 
Sbjct: 179 VDGILVGIGTILKDDPRLTVHKVPAVPKENPIRIVVDSSLRIPMTARVLNSD--AKTIIA 236

Query: 249 T------ENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAH 300
           T      E D+ +  L      + +I    +  +LK L+  L  +G+  +L+EGG  +  
Sbjct: 237 TTKPSSNEKDEKIRKLI--SMGVTVIQTGAKKVNLKDLMNELYKQGIKKILLEGGGTLNF 294

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGYL---EKNFMCVRRDYFGSD-VCLEYI 355
                 L+  I +Y +  + G    P+ ++ EG+    +   + ++  Y   D + LEYI
Sbjct: 295 GMFKENLISEIRVYVAPKIFGGSNAPTYVDGEGFKTVEDSPKLELKNHYILDDGIILEYI 354


>gi|238508822|ref|XP_002385594.1| riboflavin-specific deaminase [Aspergillus flavus NRRL3357]
 gi|220688486|gb|EED44839.1| riboflavin-specific deaminase [Aspergillus flavus NRRL3357]
          Length = 615

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 97/214 (45%), Gaps = 44/214 (20%)

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
           FL  YL +  E+R    L                    +G  +K   H LR++ DAIL+G
Sbjct: 367 FLEPYLPKYDERRMQTVL--------------------SGPEAKLMTHYLRSRHDAILIG 406

Query: 197 IGTVLADDPELTCRLNGLQEH-------SPMRIILDP--HFKLSLDSKIIKTAL----LA 243
           +GTVLAD+P L CRL G            P  +I+DP   + +  + ++++TA+     A
Sbjct: 407 VGTVLADNPGLNCRLEGAGGFGGLGRMWQPRPVIIDPTGRWPVHPECRMLRTAVEGKGKA 466

Query: 244 PVIIVTENDD--PVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVEGG 295
           P ++V+      P   +  +    + +    Y     L+   +L  L   GV S+++EGG
Sbjct: 467 PWVVVSPGAQIHPQKLMMLKGYGGDFLRIVEYNQNWRLRWEAILRALASEGVKSVMIEGG 526

Query: 296 AAVAHSFIN---SRLVDSIILYRSQIVIGEGGIP 326
             V    +N   +  +DSII+  +   +G GG+P
Sbjct: 527 GTVLSELLNPEYTEFIDSIIVTVAPTYLGSGGVP 560


>gi|254570505|ref|XP_002492362.1| Diaminohydroxyphoshoribosylaminopyrimidine deaminase [Pichia
           pastoris GS115]
 gi|238032160|emb|CAY70110.1| Diaminohydroxyphoshoribosylaminopyrimidine deaminase [Pichia
           pastoris GS115]
 gi|328353625|emb|CCA40023.1| hypothetical protein PP7435_Chr3-1080 [Pichia pastoris CBS 7435]
          Length = 243

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 105/216 (48%), Gaps = 34/216 (15%)

Query: 137 FLHAYLTRQ---VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAI 193
           FL  ++  +   + +   +TL  A S D+ I         I+   +KN    LR++ DAI
Sbjct: 6   FLEPFIPHENTLLPELPFVTLTYAQSLDSRIAAKKGERTVISHQETKNMTQYLRSKHDAI 65

Query: 194 LVGIGTVLADDPELTCRLNGLQEHSPMR-IILDPHFKL-----SLDSKIIKTALLA---P 244
           LVG+ TVLADDP L C+L      +P+R IILDP F+L     SL  K+IK  L     P
Sbjct: 66  LVGVKTVLADDPGLNCKLG-----TPIRPIILDPTFQLLSKIASL--KLIKLGLSGEGEP 118

Query: 245 VIIVTEND--DPVLALAFRKK-NINIIYCDCRDLKK-------LLTILVGRGVTSLLVEG 294
            + +T      P L    R    I+I+    RD+ +       +L IL    + S++VEG
Sbjct: 119 PVFITRKGVVSPDLQANLRSDYGISIVEIADRDVHRGKMSWFAILKILKDAEIHSVMVEG 178

Query: 295 GAAVAHSFINSR-----LVDSIILYRSQIVIGEGGI 325
           GA + +  +  R     LV S+I+    + +G+ G+
Sbjct: 179 GATIINDLLICRQNSVPLVASLIITVGPVYLGKDGV 214


>gi|330988983|gb|EGH87086.1| ribD C-terminal domain-containing protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 224

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 89/193 (46%), Gaps = 9/193 (4%)

Query: 152 ITLKIAVSQDNMIGMA-GCGSVPITGFISKNQ---VHLLRAQSDAILVGIGTVLADDPEL 207
           +T+   +S D  + M  G  S P+    + +    +H  R + DAI+VG  T++ DDP+L
Sbjct: 3   VTVFSQISIDGKLTMGKGASSKPLFQNFNDDDMRFIHKFRGEVDAIMVGRNTIVTDDPQL 62

Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
           T R    +  +P+RII      L   + I K+     +    +  D  +    R     +
Sbjct: 63  TNRYESGR--NPIRIIPTTSLDLPASASIFKSPEKTIIATTEQARDHDMVKHIRACGKEV 120

Query: 268 IYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           ++   +  D  +L  +L  RG+  ++VEGG  +     N  LVD IIL +  I+IG    
Sbjct: 121 LFAGAKHVDFTRLFPMLEARGIKHIMVEGGGNLNWQVFNLDLVDEIILMQVPIIIGGAAT 180

Query: 326 PSPLE-EGYLEKN 337
            +  + EGY + N
Sbjct: 181 ATLADGEGYRDIN 193


>gi|327393622|dbj|BAK11044.1| diaminohydroxyphosphoribosulpyrimidine deaminase ribD [Pantoea
           ananatis AJ13355]
          Length = 124

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 57/113 (50%), Gaps = 1/113 (0%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQ 90
           V C+IV DG V+ +G T   G  HAE+ A+ +          YVTLEPCS  GR+P CA 
Sbjct: 7   VGCVIVHDGEVVAKGFTQPPGQHHAEIDAIAKLTFPISECEIYVTLEPCSFQGRTPSCAL 66

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG-KIFLHAYL 142
            I E   + + + +DDP  +  G G   L + GI     +  +  + FL  YL
Sbjct: 67  TIAELKPKHIYIAMDDPHPKNRGAGRTILKKAGISFTSGIGKQAVEKFLFPYL 119


>gi|149194180|ref|ZP_01871278.1| Riboflavin biosynthesis protein RibD [Caminibacter mediatlanticus
           TB-2]
 gi|149136133|gb|EDM24611.1| Riboflavin biosynthesis protein RibD [Caminibacter mediatlanticus
           TB-2]
          Length = 326

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 93/216 (43%), Gaps = 36/216 (16%)

Query: 24  LTSTNPSV-ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA------------------- 63
           LT  NP+V A L++K+ + +     A  G PHAEV  L +A                   
Sbjct: 23  LTYPNPAVGASLVIKNKVFVSAHKKA--GSPHAEVNVLWDAFSFFHKTPKFTDSFEIHEY 80

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                      A  +VTLEPCSH G++P CA  +     + V + + DP    SG G++ 
Sbjct: 81  LIKHHNNFFNEAEMFVTLEPCSHIGKTPSCANLLKVLKPKSVTIGIKDPIKSHSG-GVEI 139

Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
           L   GI V+ + +      +  ++  +  K   I  K+A S +  I      S       
Sbjct: 140 LKNAGIEVNLLNDKRCFDLIEPFI--KWSKDKFIFFKLAQSFNGAITGGYISSED----- 192

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTC-RLNG 213
           S N VH +R + D +++G  TV  D P L   R+NG
Sbjct: 193 SLNWVHKVRDKIDLLVIGGNTVRIDRPTLDARRVNG 228


>gi|298485418|ref|ZP_07003506.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298160054|gb|EFI01087.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 224

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 9/187 (4%)

Query: 152 ITLKIAVSQDNMIGMA-GCGSVPITGFISKNQ---VHLLRAQSDAILVGIGTVLADDPEL 207
           +T+   +S D  + M  G  S P+      +    +H  R + DAI+VG  T++ DDP+L
Sbjct: 3   VTVFSQISIDGKLTMGKGASSKPLFQNFDDDDMRFIHKFRGEVDAIMVGRNTIVTDDPQL 62

Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
           T R    ++  P+RII      L   + I K+     +    +  D  +    R     +
Sbjct: 63  TNRYESGRD--PIRIIPTTSLDLPTSASIFKSPEKTIIATTEQARDHEMVKHIRACGKEV 120

Query: 268 IYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           ++   +  D  +L  +L  RG+  ++VEGG  +     N  LVD IIL +  I+IG G  
Sbjct: 121 LFAGAKHVDFTRLFPMLEARGINHIMVEGGGHLNWQVFNLDLVDEIILMQVPIIIG-GAA 179

Query: 326 PSPLEEG 332
            + L +G
Sbjct: 180 TATLADG 186


>gi|297526352|ref|YP_003668376.1| bifunctional deaminase-reductase domain protein [Staphylothermus
           hellenicus DSM 12710]
 gi|297255268|gb|ADI31477.1| bifunctional deaminase-reductase domain protein [Staphylothermus
           hellenicus DSM 12710]
          Length = 225

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 90/184 (48%), Gaps = 13/184 (7%)

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           ++H  R+  DA++VG  TV+ DDP LT RL   +   P R+++D   ++  + ++  T  
Sbjct: 35  RLHYFRSIVDAVMVGANTVIIDDPLLTVRLPDYKGKQPYRVVVDGKLRVMPELRVFDTR- 93

Query: 242 LAPVIIVT--ENDDPVLALAFRKKNINIIYCDCR-------DLKKLLTILVGR-GVTSLL 291
            AP I++T   N D  +   F  + + I++ D         DL+K +  L     +  +L
Sbjct: 94  HAPTILITSINNKDREMIRRFLSRGVRILFVDTDKYDPSKIDLRKAVEKLYREFSIRKIL 153

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           VEGG  +  S   +RL+D + L  S ++IG     + L E +L+     V ++ F   + 
Sbjct: 154 VEGGGQLIASLFKNRLIDELYLSISPLIIGLNK--TSLIEDFLDSPVRLVLKNIFVDHIT 211

Query: 352 LEYI 355
            E I
Sbjct: 212 GEII 215


>gi|114798109|ref|YP_758764.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Hyphomonas neptunium ATCC 15444]
 gi|114738283|gb|ABI76408.1| riboflavin biosynthesis protein RibD N-terminal domain protein
           [Hyphomonas neptunium ATCC 15444]
          Length = 152

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/116 (47%), Positives = 72/116 (62%), Gaps = 3/116 (2%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATA 72
           A + +R + GLT  NPSV CLI+   G + G GVT  GG PHAE  AL+EA  +A G TA
Sbjct: 16  AFQLARLNHGLTGKNPSVGCLILDARGHIAGAGVTGTGGAPHAEEVALDEAAGKAAGGTA 75

Query: 73  YVTLEPCSHYGR-SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           YVTLEPC      +P CA+ ++E GI RVVV ++DP    +  GL  L + G+ V+
Sbjct: 76  YVTLEPCRERSSGAPSCARKLVEAGIARVVVAIEDPHP-TARDGLAILREAGVRVE 130


>gi|320323039|gb|EFW79128.1| ribD C-terminal domain protein [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320329689|gb|EFW85678.1| ribD C-terminal domain protein [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330882190|gb|EGH16339.1| ribD C-terminal domain-containing protein [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 224

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 9/187 (4%)

Query: 152 ITLKIAVSQDNMIGMA-GCGSVPITGFISKNQ---VHLLRAQSDAILVGIGTVLADDPEL 207
           +T+   +S D  + M  G  S P+      +    +H  R + DAI+VG  T++ DDP+L
Sbjct: 3   VTVFSQISIDGKLTMGKGASSKPLFQNFDDDDMRFIHKFRGEVDAIMVGRNTIVTDDPQL 62

Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
           T R    +  +P+RII      L   + I K+     +    +  D  +    R     +
Sbjct: 63  TNRYESGR--NPIRIIPTTSLDLPTSASIFKSPEKTIIATTEQARDHEMVKHIRACGKEV 120

Query: 268 IYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           ++   +  D  +L  +L  RG+  ++VEGG  +     N  LVD IIL +  I+IG G  
Sbjct: 121 LFAGAKHVDFTRLFPMLEARGINHIMVEGGGHLNWQVFNLDLVDEIILMQVPIIIG-GAA 179

Query: 326 PSPLEEG 332
            + L +G
Sbjct: 180 TATLADG 186


>gi|302546634|ref|ZP_07298976.1| LOW QUALITY PROTEIN: riboflavin biosynthesis, RibD
           domain-containing protein [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302464252|gb|EFL27345.1| LOW QUALITY PROTEIN: riboflavin biosynthesis, RibD
           domain-containing protein [Streptomyces himastatinicus
           ATCC 53653]
          Length = 272

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 22/210 (10%)

Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214
           ++  S D  I      +  +TG   +  +H LRA +DA++VG GT LADDP+LT R    
Sbjct: 66  QLGQSLDGFIATRTGDADYVTGEEDRCHLHRLRALTDAVVVGAGTALADDPQLTVR--AC 123

Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV--TENDDPVLALAFRKKNINIIYCDC 272
               P+R+ILDPH ++    ++  T   AP + V   E  D   A       ++++    
Sbjct: 124 SGPHPVRVILDPHGRVPPHRRVF-TDGSAPTLWVVGAETGDGRTA----PDGVDVLTLPD 178

Query: 273 RDL---KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP--- 326
           R     ++L+  L  RG+  +L+EGG      F++   +  + +  + +++G+ GIP   
Sbjct: 179 RAAFAPQRLVEALAARGLGRVLIEGGGVTVSRFLHDGALHRLYVTVAPVLLGD-GIPGLR 237

Query: 327 ---SPLEEGYLEKNFMCVRRDYFGSDVCLE 353
              +P+    L       RR   G D   E
Sbjct: 238 FDGTPVMRDALRPR---TRRARLGEDTLFE 264


>gi|12229926|sp|Q9P4B8|RIB7_KLUMA RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|9651717|gb|AAF91239.1|AF225206_5 riboflavin biosynthesis protein [Kluyveromyces marxianus]
          Length = 249

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 101/215 (46%), Gaps = 22/215 (10%)

Query: 137 FLHAYL---TRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
           FL  YL    R  +K + ++ L  A S D+ I         I+   +K   H LR + DA
Sbjct: 13  FLEPYLPDEERDADKEKPYVILTYAQSLDSRIAKIKGTRTFISHEETKTMTHYLRYKFDA 72

Query: 193 ILVGIGTVLADDPELTCRL---NGLQEH----SPMRIILDPHFKLSL-DSKIIKTALL-- 242
           I++G GTV+ DDP L C+    +   EH    SP  IILDP+ K    DSK+ K      
Sbjct: 73  IMLGCGTVMIDDPGLNCKWWPEDEKPEHLAGISPRPIILDPNCKWKFADSKMKKLYEAGD 132

Query: 243 --APVIIVTE-NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAV 298
             AP+I+V E   +P   + +     N  +    D   +L  L  +  V S++VEGG  V
Sbjct: 133 GKAPIIVVKELPSEPEEGVDYLVMRTN--FTGKMDWSDMLVQLKSKFNVKSVMVEGGGIV 190

Query: 299 AHSFIN-SRLVDSIILYRSQIVIGEGGIP-SPLEE 331
            +  +    LVD++I+      +G  G+  SPL E
Sbjct: 191 INDLLQRPNLVDALIITLGATFLGSEGVEVSPLVE 225


>gi|296411775|ref|XP_002835605.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629391|emb|CAZ79762.1| unnamed protein product [Tuber melanosporum]
          Length = 259

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 97/202 (48%), Gaps = 39/202 (19%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
           +TL  A S D+ + +      P++G  +K+  H LR   DAILVG+GT + DDP L  RL
Sbjct: 28  LTLTYATSLDSHLSIP-LTQFPLSGPETKSLTHHLRTFHDAILVGVGTAVVDDPGLNSRL 86

Query: 212 NGLQ-EHSPMRIILDPHFK--LSLDSKIIKTAL----LAPVIIV-----TENDDP----- 254
            G      P  +ILDP F+  ++ +S++++TA     LAP + V      + D+      
Sbjct: 87  PGTPLTRQPRPVILDPAFRWGVTRESRVVQTAKRGEGLAPYVFVRSEVEIDGDERRGILE 146

Query: 255 --------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI--- 303
                   +  L  R+ + +++    R            G+ S++VEGG  V +  +   
Sbjct: 147 EVGGKVVVIETLGKRRWSWDVLSEKMRAF----------GLNSVMVEGGGGVINDLLAEG 196

Query: 304 NSRLVDSIILYRSQIVIGEGGI 325
           N   VDS+I+  +   +G+GG+
Sbjct: 197 NLPHVDSVIVTVAPTYLGQGGV 218


>gi|255071909|ref|XP_002499629.1| predicted protein [Micromonas sp. RCC299]
 gi|226514891|gb|ACO60887.1| predicted protein [Micromonas sp. RCC299]
          Length = 639

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 132/339 (38%), Gaps = 31/339 (9%)

Query: 23  GLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           GL   +P   C+++   G V+ R      G   +EV A+ EAG  A G  AY+ LEP   
Sbjct: 47  GLVQPHPRSGCVLLDSAGAVVARTFQMGQGGVRSEVLAVREAGARADGGVAYLNLEPAHG 106

Query: 82  YGRSPPCA-QFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
                  A   ++   + RVVV +  P   V G+ +  L   G+ VD + E   +    A
Sbjct: 107 PAVGEDAAVDALVRSRVSRVVVGILHPVAGVRGQAVAALRDAGVRVDVLGEFTSRFTSAA 166

Query: 141 ---------------------YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
                                 L R    R     K A++ D  I      S  +TG  +
Sbjct: 167 DERAASAVAEGIARCRDANRHLLHRVATGRPFSIFKYAMTVDGKIATTSGHSAWVTGPAA 226

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           + QV   RA+SDA++VG  TV  D+P LT R +G   H P RI+     + +L      T
Sbjct: 227 RQQVWAERARSDAVVVGGTTVRRDNPNLTTRRDG--GHRPARIVRVRKPRTNL----WNT 280

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
                +++             R   + ++  D      +      RG   L  E G  +A
Sbjct: 281 DEANTIVMTVAGARREFQAELRALGVEVVEFDELTPGAVADYCAKRGYLQLFWECGGGLA 340

Query: 300 HSFINSRLVDSIILYRSQIVIGEGG--IPSPLEEGYLEK 336
              +   +   ++ + +  ++G  G   PSP+ E  LE+
Sbjct: 341 GPALTDGVFHHVMAFVAPKIVGSSGGPAPSPVGETGLER 379


>gi|297155044|gb|ADI04756.1| bifunctional deaminase-reductase-like protein [Streptomyces
           bingchenggensis BCW-1]
          Length = 361

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 26/224 (11%)

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           GL+W  +        +  E +I    YL   +        ++  S D  I      +  +
Sbjct: 33  GLRWRQE--------VSPEVRILTDRYLPLCLAGPRLAVAQLGQSLDGFIATRTGDADYV 84

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           TG   +  +H LRA  DA++VG GT +ADDP+LT R       +P+R++LDPH ++    
Sbjct: 85  TGEEDRAHLHHLRALVDAVVVGAGTAVADDPQLTVR--ACTGTNPVRVVLDPHGRVPSQR 142

Query: 235 KIIKTALLAPVIIVT--------ENDDPVLALAFRKK----NINIIYCDCR---DLKKLL 279
           ++      AP + V         EN    +  + R +    +++++    R   + + LL
Sbjct: 143 RVFIDG-SAPTLWVVAADSGRGGENGSVGVDGSGRHRGLGAHVDVLTLPDRAAFEPRSLL 201

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
             L  RG+  +L+EGG      F++ R +D + +  + +++G+G
Sbjct: 202 DALARRGLGRVLIEGGGVTVSRFLHQRALDRLYVTVAPVLLGDG 245


>gi|330944605|gb|EGH46556.1| ribD C-terminal domain-containing protein [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 224

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 9/187 (4%)

Query: 152 ITLKIAVSQDNMIGMA-GCGSVPITGFISKNQ---VHLLRAQSDAILVGIGTVLADDPEL 207
           +T+   +S D  + M  G  S P+      +    +H  R + DAI+VG  T++ DDP+L
Sbjct: 3   VTVFSQISIDGKLTMGKGASSKPLFQNFDDDDMRFIHKFRGEVDAIMVGRNTIVTDDPQL 62

Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
           T R    +  +P+RII      L   + I K+     +    +  D  +    R     +
Sbjct: 63  TNRYESGR--NPIRIIPTTSLDLPTSASIFKSPEKTIIATSEQARDHEMVKNIRACGKEV 120

Query: 268 IYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           ++   +  D  +L  +L  RG+  ++VEGG  +     N  LVD IIL +  I+IG G  
Sbjct: 121 LFAGAKHVDFTRLFPMLEARGINHIMVEGGGHLNWQVFNLDLVDEIILMQVPIIIG-GAA 179

Query: 326 PSPLEEG 332
            + L +G
Sbjct: 180 TATLADG 186


>gi|28868061|ref|NP_790680.1| ribD C-terminal domain-containing protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28851297|gb|AAO54375.1| ribD C-terminal domain protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|331018395|gb|EGH98451.1| ribD C-terminal domain protein [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 224

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 9/187 (4%)

Query: 152 ITLKIAVSQDNMIGMA-GCGSVPITGFISKNQ---VHLLRAQSDAILVGIGTVLADDPEL 207
           +T+   +S D  + M  G  S P+      +    +H  R + DAI+VG  T++ DDP+L
Sbjct: 3   VTVFSQISIDGKLTMGKGASSKPLFQNFDDDDMRFIHKFRGEVDAIMVGRNTIVTDDPQL 62

Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
           T R    +  +P+RII      L   + I K+     +    +  D  +    R     +
Sbjct: 63  TNRYESGR--NPIRIIPTTSLDLPTSASIFKSPEKTIIATSEQARDHEMVKHIRACGKEV 120

Query: 268 IYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           ++   +  D  +L  +L  RG+  ++VEGG  +     N  LVD IIL +  I+IG G  
Sbjct: 121 LFAGAKHVDFTRLFPMLEARGINHIMVEGGGHLNWQVFNLDLVDEIILMQVPIIIG-GAA 179

Query: 326 PSPLEEG 332
            + L +G
Sbjct: 180 TATLADG 186


>gi|302831894|ref|XP_002947512.1| hypothetical protein VOLCADRAFT_57231 [Volvox carteri f.
           nagariensis]
 gi|300267376|gb|EFJ51560.1| hypothetical protein VOLCADRAFT_57231 [Volvox carteri f.
           nagariensis]
          Length = 547

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 144/323 (44%), Gaps = 14/323 (4%)

Query: 23  GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G+T  +P++AC++V  DG  I        G   AEV A+  AG  ARGATAY+ LE    
Sbjct: 1   GVTQPHPNMACILVGPDGSKISEAYQRAQGTTSAEVLAVTAAGGAARGATAYLNLESGDC 60

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL--- 138
           +G        ++  G+ RVVV +  P   +  R +  L       D    +     +   
Sbjct: 61  HGEM-AAVDALVRGGVSRVVVGLRHPLRHLRSRAIGMLRAGSFDGDDATSAAAYGAMSAC 119

Query: 139 ----HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
                A L R V +R    LK A++ D  I      S  ++   S+  V  +RA+SDA++
Sbjct: 120 LAANEALLHRSVLRRPLGVLKYAMTLDGKIATNIGHSSWVSSPQSRGLVFEMRARSDAVI 179

Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
           VG  TV  D+P LT R  G   H+P RI++     L  D+ +     LAP I++T+    
Sbjct: 180 VGGNTVRRDNPRLTTRREG--GHTPARIVMSRTLDLPEDANLWDVT-LAPTIVLTQRGAR 236

Query: 255 V-LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
                A R   + ++  D    + +      RG      E G  +A   I S +V  ++ 
Sbjct: 237 TRFQAALRSAGVEVVEFDFLTPESVADYCQERGFLQCFWECGGTLAAPTIASGVVHKVMA 296

Query: 314 YRSQIVIGEGGIPSPLEE-GYLE 335
           + +  +IG    P+P+ E G++E
Sbjct: 297 FVAPKIIGGVRAPTPVGELGFVE 319


>gi|50311993|ref|XP_456028.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|54036251|sp|Q6CJ61|RIB7_KLULA RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|49645164|emb|CAG98736.1| KLLA0F21120p [Kluyveromyces lactis]
          Length = 252

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 96/223 (43%), Gaps = 36/223 (16%)

Query: 137 FLHAYLTRQV-----EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191
           FL  Y+         +++ ++ L  A S D  I         I+   +    H LR + D
Sbjct: 13  FLEPYMPENAGVLGEQEKPYVILTYAQSLDARIAKIKGTRTIISHQETNTMTHYLRYKFD 72

Query: 192 AILVGIGTVLADDPELTCRL--------NGLQEHSPMRIILDPHFKLSLDSKIIKTAL-- 241
            I++G GTVL DDP L C+             EHSP  IILDP+ K   +   +KT    
Sbjct: 73  GIMLGCGTVLVDDPGLNCKWWPDDEPKPEHFAEHSPRPIILDPNGKWKFEGSKMKTLFDS 132

Query: 242 ---LAPVIIVT-------EN-DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
               AP+++V        EN D  V+   F  K       D  DL   + +    G+ S+
Sbjct: 133 GDGKAPIVVVKKLPEVVEENVDYLVMQTNFTGK------VDWHDL--FIQLKSQFGLKSI 184

Query: 291 LVEGGAAVAHSFIN-SRLVDSIILYRSQIVIGEGGIP-SPLEE 331
           +VEGG  V +  +    L+D++++      +G  G+  SPL E
Sbjct: 185 MVEGGGIVINDLLQRPHLIDALVITVGATFLGSEGVEVSPLIE 227


>gi|76801978|ref|YP_326986.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Natronomonas
           pharaonis DSM 2160]
 gi|76557843|emb|CAI49427.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Natronomonas
           pharaonis DSM 2160]
          Length = 219

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 84/187 (44%), Gaps = 12/187 (6%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL--- 207
            +T+  A+S D  +       + I+G     +++ LRA  DA+LVG+GTVLAD+P L   
Sbjct: 2   DVTVNAAMSADGKLSSRRREQIAISGDADFERMYRLRAAVDAVLVGVGTVLADNPSLRSH 61

Query: 208 ----TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV-LALAFRK 262
                  + G     P R++ D   +   D+ I+  A      ++T    P     A R+
Sbjct: 62  DEAHRAEVYGPDADPPARVVADSACRTPPDADIL--AGEPDTYVLTSGAAPEDRRAALRE 119

Query: 263 KNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
               +I  D     L      L  RG+  L+VEGG  +  S   + LVDS+ +Y   +VI
Sbjct: 120 AGAELIVTDGDRVSLSTAFAELAARGIDRLMVEGGGELIFSLFEAGLVDSLSVYIGDLVI 179

Query: 321 GEGGIPS 327
           G    P+
Sbjct: 180 GGRDAPT 186


>gi|302348951|ref|YP_003816589.1| Pyrimidine nucleotide reductase [Acidilobus saccharovorans 345-15]
 gi|302329363|gb|ADL19558.1| Pyrimidine nucleotide reductase [Acidilobus saccharovorans 345-15]
          Length = 215

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 16/168 (9%)

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTAL 241
           H LRA SDA+LVG  T + D+P LT R       +P+R+++D   K+  +LD   I    
Sbjct: 36  HELRAWSDAVLVGANTAIKDNPSLTVR--KAVGKNPLRVVVDASLKVPPTLDMFSIPGK- 92

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAV 298
              VII TE+ +      ++++ I II        DL+  +  L   GV  L++EGG   
Sbjct: 93  --GVIITTEDHNGEELAKYKERGIVIIRAGVGPEVDLRTAVRALFEMGVRRLMIEGGGTT 150

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG-----GIPSPLEEGYL-EKNFMC 340
           ++ F+   LVD + +  S IV G G     G  S L++ YL E   +C
Sbjct: 151 SYRFLKEGLVDELWITLSPIVFGSGTSIINGERSLLQDLYLRELKVLC 198


>gi|325968187|ref|YP_004244379.1| 2, 5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Vulcanisaeta moutnovskia 768-28]
 gi|323707390|gb|ADY00877.1| 2, 5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Vulcanisaeta moutnovskia 768-28]
          Length = 219

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 77/162 (47%), Gaps = 17/162 (10%)

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           ++H +RA  DAI+VG  TV+ DDP LT R     ++ P+R+I+D   ++ L +K+I    
Sbjct: 35  RLHEVRASVDAIMVGANTVINDDPSLTPRYVKAIKN-PIRVIIDGKLRIPLTAKVITNKE 93

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY-----CDCRD-LKKLLTILVGRGVTSLLVEGG 295
              +I+ TE  D           + +        + RD L+KL T    +GV  +LVEGG
Sbjct: 94  APTIIVTTEQSDRNKTAQLMNMGVEVWVMGKERVNLRDVLEKLFT---EKGVKRVLVEGG 150

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLE 330
             +    I   + D I L  S  V G G       G P+ +E
Sbjct: 151 GHLNWELIKEEIADEIRLTISPYVFGAGTSFIEGEGYPTTME 192


>gi|220920297|ref|YP_002495598.1| bifunctional deaminase-reductase domain-containing protein
           [Methylobacterium nodulans ORS 2060]
 gi|219944903|gb|ACL55295.1| bifunctional deaminase-reductase domain protein [Methylobacterium
           nodulans ORS 2060]
          Length = 255

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 6/172 (3%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
           +  ++  S D  I      S  I    + + +H LRA  DAI+VGIGTVLADDP LT R 
Sbjct: 48  VIAQLGQSLDGRIATLSGDSKYINRGAALDHLHRLRAHVDAIVVGIGTVLADDPRLTVRR 107

Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD 271
             +   SP RI++DP  ++   ++ ++   +   I+V   D  + A A   + + I   +
Sbjct: 108 --VAGRSPARIVIDPAGRIPAQAQCLREDGVR-RIVVCRPDTRIPACA---EALRIEAPE 161

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
               + L++ L   G   +L+EGGA     FI++  +D + L  + +++G G
Sbjct: 162 AFPPQALVSALGRLGFRRILIEGGARTISGFIDAGAIDRLHLMVAPLLLGSG 213


>gi|237653124|ref|YP_002889438.1| bifunctional deaminase-reductase domain protein [Thauera sp. MZ1T]
 gi|237624371|gb|ACR01061.1| bifunctional deaminase-reductase domain protein [Thauera sp. MZ1T]
          Length = 290

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 5/199 (2%)

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
           R + ++    L  +L            ++  S D  I  A   S  I    ++  +H LR
Sbjct: 49  RALRADTAELLDLFLPWVARPGRLAIAQLGQSLDGRIATASGASHYINCLEARTHLHRLR 108

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           A  DA++VG+GTV ADDP+LT R   +   +P+R++LDP  +   D+++ +      V +
Sbjct: 109 ALVDAVVVGVGTVNADDPQLTVRH--VAGRNPVRVVLDPRGRARADARLFQDGAAPTVHL 166

Query: 248 VTENDDPVLA--LAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           V E+  P  A  L  R     +       +   +L  L   G   +LVEGG      F+ 
Sbjct: 167 VGEDLAPGTAAVLPGRVARAGLPGAGSGFEPGAVLDWLARAGCRRVLVEGGGHTVSRFVQ 226

Query: 305 SRLVDSIILYRSQIVIGEG 323
           +  ++ + L  + ++IG G
Sbjct: 227 AGAIERLHLLVAPLLIGSG 245


>gi|183220792|ref|YP_001838788.1| riboflavin biosynthesis protein RibD [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189910892|ref|YP_001962447.1| pyrimidine deaminase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167775568|gb|ABZ93869.1| Pyrimidine deaminase, riboflavin biosynthesis [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779214|gb|ABZ97512.1| Riboflavin biosynthesis protein RibD [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 430

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 15/205 (7%)

Query: 22  VGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQA---LEEAGEEARGATA----- 72
           +G T  NP V+ ++    G  I +  T   G  HAE +    +E+    ++  T      
Sbjct: 21  MGKTGGNPPVSAVLTNSIGEPIEKAHTQGYGGNHAERELYSLVEQKHSHSQIQTDENSLS 80

Query: 73  ----YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV-SGRGLQWLSQ-KGIIV 126
                V+LEPC+H+G++PPC   +++   + +++   DP+  V SG    +L Q   + +
Sbjct: 81  DTILSVSLEPCTHFGKTPPCRDLVLQHKPKELLLGWKDPNPMVQSGDWKLYLEQGTKVRL 140

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
           D M+ +    +L  +L R    +  + +K A S +            ++       + LL
Sbjct: 141 DPMLANTSLPYLQGFLKRMQTGKPWVWIKSATSTEGNYVSKSFTKERVSSIEMDLYLQLL 200

Query: 187 RAQSDAILVGIGTVLADDPELTCRL 211
           RA+ DA+ VG  T   D+P L  R+
Sbjct: 201 RAKFDAVAVGPNTTKVDEPSLHFRI 225


>gi|190408694|gb|EDV11959.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Saccharomyces
           cerevisiae RM11-1a]
 gi|323356098|gb|EGA87903.1| Rib7p [Saccharomyces cerevisiae VL3]
          Length = 244

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 96/206 (46%), Gaps = 24/206 (11%)

Query: 137 FLHAYLTR--QVEKR--SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
           FL  YL    Q E      +TL  A S D  +         I+   +K   H LR   D 
Sbjct: 13  FLQNYLPNAGQTENTIVPFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDG 72

Query: 193 ILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLD-SKI----IKTALLAPVI 246
           ILVG GTVLAD+P L C+       +SP  II+D   K   D SK+    IK     P++
Sbjct: 73  ILVGSGTVLADNPGLNCKWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIV 132

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGR-GVTSLLVEGGAAVA 299
           +VT   +P++    ++++++   C         D KKL  IL     + S++VEGGA V 
Sbjct: 133 VVTS--EPII----KEQHVDYAICPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVI 186

Query: 300 HS-FINSRLVDSIILYRSQIVIGEGG 324
           +   + S +V+S+IL      +G  G
Sbjct: 187 NQLLLRSDIVNSLILTIGSTFLGSSG 212


>gi|6319629|ref|NP_009711.1| Rib7p [Saccharomyces cerevisiae S288c]
 gi|465506|sp|P33312|RIB7_YEAST RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|396753|emb|CAA50471.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|536482|emb|CAA85112.1| RIB7 [Saccharomyces cerevisiae]
 gi|642227|emb|CAA79746.1| HTP reductase [Saccharomyces cerevisiae]
 gi|45269317|gb|AAS56039.1| YBR153W [Saccharomyces cerevisiae]
 gi|285810483|tpg|DAA07268.1| TPA: Rib7p [Saccharomyces cerevisiae S288c]
          Length = 244

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 96/206 (46%), Gaps = 24/206 (11%)

Query: 137 FLHAYLTR--QVEKR--SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
           FL  YL    Q E      +TL  A S D  +         I+   +K   H LR   D 
Sbjct: 13  FLQNYLPNAGQTENTIVPFVTLTYAQSLDARVSRGPGVRTTISHPETKTMTHYLRHHHDG 72

Query: 193 ILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLD-SKI----IKTALLAPVI 246
           ILVG GTVLAD+P L C+       +SP  II+D   K   D SK+    IK     P++
Sbjct: 73  ILVGSGTVLADNPGLNCKWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIV 132

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGR-GVTSLLVEGGAAVA 299
           +VT   +P++    ++++++   C         D KKL  IL     + S++VEGGA V 
Sbjct: 133 VVTS--EPII----KEQHVDYAICPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVI 186

Query: 300 HS-FINSRLVDSIILYRSQIVIGEGG 324
           +   + S +V+S+I+      +G  G
Sbjct: 187 NQLLLRSDIVNSLIITIGSTFLGSSG 212


>gi|323338689|gb|EGA79905.1| Rib7p [Saccharomyces cerevisiae Vin13]
          Length = 244

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 96/206 (46%), Gaps = 24/206 (11%)

Query: 137 FLHAYLTR--QVEKR--SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
           FL  YL    Q E      +TL  A S D  +         I+   +K   H LR   D 
Sbjct: 13  FLQNYLPNAGQTENTIVPFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDG 72

Query: 193 ILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLD-SKI----IKTALLAPVI 246
           ILVG GTVLAD+P L C+       +SP  II+D   K   D SK+    IK     P++
Sbjct: 73  ILVGSGTVLADNPGLNCKWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIV 132

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGR-GVTSLLVEGGAAVA 299
           +VT   +P++    ++++++   C         D KKL  IL     + S++VEGGA V 
Sbjct: 133 VVTS--EPII----KEQHVDYAICPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVI 186

Query: 300 HS-FINSRLVDSIILYRSQIVIGEGG 324
           +   + S +V+S+IJ      +G  G
Sbjct: 187 NQLLLRSDIVNSLIJTIGSTFLGSSG 212


>gi|207347626|gb|EDZ73736.1| YBR153Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 218

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 93/206 (45%), Gaps = 24/206 (11%)

Query: 137 FLHAYLTR--QVEKR--SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
           FL  YL    Q E      +TL  A S D  +         I+   +K   H LR   D 
Sbjct: 13  FLQNYLPNAGQTENTIVPFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDG 72

Query: 193 ILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSK-----IIKTALLAPVI 246
           ILVG GTVLAD+P L C+       +SP  II+D   K   D        IK     P++
Sbjct: 73  ILVGSGTVLADNPGLNCKWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIV 132

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGR-GVTSLLVEGGAAVA 299
           +VT   +P++    ++++++   C         D KKL  IL     + S++VEGGA V 
Sbjct: 133 VVTS--EPII----KEQHVDYAICPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVI 186

Query: 300 HS-FINSRLVDSIILYRSQIVIGEGG 324
           +   + S +V+S+IL      +G  G
Sbjct: 187 NQLLLRSDIVNSLILTIGSTFLGSSG 212


>gi|289623948|ref|ZP_06456902.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
          Length = 113

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 1/113 (0%)

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQV 146
           CA  ++  G+ RVV  + DP+  VSGRGL  L   GI V   ++ESE +     +L R  
Sbjct: 1   CADALVNAGLARVVAAMQDPNPDVSGRGLLRLMNAGIGVQCGVLESEARALNKGFLKRME 60

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199
             + +I +K+A+S D    MA   S  ITG  +++ V  LRAQS  +L G  T
Sbjct: 61  TGQPYIRVKMAMSLDGRTAMASGESQWITGPEARSAVQRLRAQSSVVLTGADT 113


>gi|71737585|ref|YP_275900.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71558138|gb|AAZ37349.1| RibD C-terminal domain protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 217

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 9/187 (4%)

Query: 152 ITLKIAVSQDNMIGMA-GCGSVPITGFISKNQ---VHLLRAQSDAILVGIGTVLADDPEL 207
           +T+   +S D  + M  G  S P+      +    +H  R + DAI+VG  T++ DDP+L
Sbjct: 3   VTVFSQISIDGKLTMGKGASSKPLFQNFDDDDMRFIHKFRGEVDAIMVGRNTIVTDDPQL 62

Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
           T R    +  +P+RII      L   + I K+     +    +  D  +    R     +
Sbjct: 63  TNRYESGR--NPIRIIPTTSLDLPTSASIFKSPEKTIIATTEQARDHEMVKHIRACGKEV 120

Query: 268 IYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           ++   +  D  +L  +L  RG+  ++VEGG  +     N  LVD IIL +  I+IG G  
Sbjct: 121 LFAGAKHVDFTRLFPMLEVRGINHIMVEGGGHLNWQVFNLDLVDEIILMQVPIIIG-GAA 179

Query: 326 PSPLEEG 332
            + L +G
Sbjct: 180 TATLADG 186


>gi|18313740|ref|NP_560407.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pyrobaculum
           aerophilum str. IM2]
 gi|18161296|gb|AAL64589.1| riboflavin specific deaminase, putative [Pyrobaculum aerophilum
           str. IM2]
          Length = 227

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 8/178 (4%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R ++ L  AV+ D  I  +  G   ++      ++H LRA+ DA++VG  T + D+P LT
Sbjct: 2   RPYVYLMAAVTIDGRIA-SKSGYSRLSCPHDLKRLHALRAEVDAVIVGANTAIIDNPRLT 60

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL-AFRKKNINI 267
            R       +P R+++D   +     +I      AP I+ T N  P   +   R+  I +
Sbjct: 61  VRYAA--GRNPTRVLIDGALRAPTTLRIFDKT--APTIVYTTNLAPAEKINELRRLGIEV 116

Query: 268 IYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           +       D   +L+ L  RGV  +L+EGG      FI+  LVD +I+  +  V G G
Sbjct: 117 VVFPSHRVDPASVLSDLYNRGVRKVLIEGGGRTNWEFISKCLVDEVIVTVTPYVFGSG 174


>gi|215694535|dbj|BAG89528.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 401

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 95/204 (46%), Gaps = 6/204 (2%)

Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH 217
           ++ D  I  +   +  ++G  S+ +V  LR +SDAI+VG  TV  DDP LT R   ++ H
Sbjct: 1   MTADGKIAASSGHASWVSGKSSRGRVFELRGRSDAIIVGGNTVRLDDPRLTAR--HVKGH 58

Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277
            P+RI++     L  ++ +        ++         L      K + ++  D  + + 
Sbjct: 59  VPVRIVMSQSLNLPEEANLWNVHDAYTIVATQRGARRDLQKKLALKGVEVVEFDMLNPRD 118

Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
           +++    RG  S+L E G  +A S I++ ++  +  + +  +IG    P+P+  G L  N
Sbjct: 119 VMSYCYDRGYLSVLWECGGTLAASAISASVIHKVYAFLAPKIIGGVNAPTPV--GELGMN 176

Query: 338 FMCVRRDYFGSDVCLEYIGKNLCL 361
            M    D    DV  E I +++ +
Sbjct: 177 QMTQAIDLI--DVSYEQIDRDMLM 198


>gi|225847913|ref|YP_002728076.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644623|gb|ACN99673.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 221

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 92/186 (49%), Gaps = 10/186 (5%)

Query: 148 KRSHITLKIAVSQDNMIGMA-GCGSVPITGFISKNQ---VHLLRAQSDAILVGIGTVLAD 203
           KR +  +   V+ D  + +A G  S  I  F+ +     +H  RA+ D I+VG  T+  D
Sbjct: 2   KRPYTIIISEVTVDGKLTLAKGVSSKEIMKFMDEEANRYLHETRAKVDGIMVGAETIRTD 61

Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
           +P LT R   ++  +P RII      + LD+ ++K    AP II+T    P   +    +
Sbjct: 62  NPYLTVRY--VKGKNPTRIIPTSTADIPLDANVLKKD--APTIIITTEKAPEEKIKALSE 117

Query: 264 NINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            + ++    +  DL K++  L  RG+ +L+VEGG+ +  + +N  LVD I +     ++G
Sbjct: 118 KVEVVKIGDEKVDLIKMMDFLYNRGIRTLMVEGGSTLNWNLLNLGLVDEIRIIHMPFIVG 177

Query: 322 EGGIPS 327
               P+
Sbjct: 178 GTDTPT 183


>gi|323305972|gb|EGA59707.1| Rib7p [Saccharomyces cerevisiae FostersB]
          Length = 244

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 96/206 (46%), Gaps = 24/206 (11%)

Query: 137 FLHAYLTR--QVEKR--SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
           FL  YL    Q E      +TL  A S D  +         I+   +K   H LR   D 
Sbjct: 13  FLXNYLPNAGQTENTIVPFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDG 72

Query: 193 ILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLD-SKI----IKTALLAPVI 246
           ILVG GTVLAD+P L C+       +SP  II+D   K   D SK+    IK     P++
Sbjct: 73  ILVGSGTVLADNPGLNCKWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIV 132

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGR-GVTSLLVEGGAAVA 299
           +VT   +P++    ++++++   C         D KKL  IL     + S++VEGGA V 
Sbjct: 133 VVTS--EPII----KEQHVDYAICPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVI 186

Query: 300 HS-FINSRLVDSIILYRSQIVIGEGG 324
           +   + S +V+S+IJ      +G  G
Sbjct: 187 NQLLLRSDIVNSLIJTIGSTFLGSSG 212


>gi|256270197|gb|EEU05420.1| Rib7p [Saccharomyces cerevisiae JAY291]
 gi|290878168|emb|CBK39227.1| Rib7p [Saccharomyces cerevisiae EC1118]
 gi|323334602|gb|EGA75976.1| Rib7p [Saccharomyces cerevisiae AWRI796]
          Length = 244

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 96/206 (46%), Gaps = 24/206 (11%)

Query: 137 FLHAYLTR--QVEKR--SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
           FL  YL    Q E      +TL  A S D  +         I+   +K   H LR   D 
Sbjct: 13  FLQNYLPNAGQTENTIVPFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDG 72

Query: 193 ILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLD-SKI----IKTALLAPVI 246
           ILVG GTVLAD+P L C+       +SP  II+D   K   D SK+    IK     P++
Sbjct: 73  ILVGSGTVLADNPGLNCKWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIV 132

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGR-GVTSLLVEGGAAVA 299
           +VT   +P++    ++++++   C         D KKL  IL     + S++VEGGA V 
Sbjct: 133 VVTS--EPII----KEQHVDYAICPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVI 186

Query: 300 HS-FINSRLVDSIILYRSQIVIGEGG 324
           +   + S +V+S+I+      +G  G
Sbjct: 187 NQLLLRSDIVNSLIITIGSTFLGSSG 212


>gi|237751530|ref|ZP_04582010.1| riboflavin biosynthesis protein [Helicobacter bilis ATCC 43879]
 gi|229372896|gb|EEO23287.1| riboflavin biosynthesis protein [Helicobacter bilis ATCC 43879]
          Length = 397

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 102/257 (39%), Gaps = 66/257 (25%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA------- 63
           M  AL ++     LT  NP V  L++ D  +I        G PHAEV A +EA       
Sbjct: 1   MRIALDYAWSFQTLTLPNPCVGSLVLCDNTIIALQTHKKAGSPHAEVLACKEAFLYKITH 60

Query: 64  GEEARGA------------------------------------TAY-----------VTL 76
            E A+ A                                    TAY           VTL
Sbjct: 61  DEVAKRAVLESCKKQGLNKDNILSYLINTLQNMQDSKHIHEFITAYHSGIFHNCEFFVTL 120

Query: 77  EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI 136
           EPC+HYG++PPCA+ +     +R+++  +D   + SG G   L+    I   ++  E   
Sbjct: 121 EPCNHYGKTPPCAELLKTIAPKRIIIAHEDSTPKASG-GANTLAHIP-ITHGILRDEAHK 178

Query: 137 FLHAYLTRQVEKRSHITLKIA--VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
            L  +L  Q +KR+    KIA  +  D   G+       I+   S+   H +R  +D I+
Sbjct: 179 LLFPFLQWQ-KKRNFTLFKIAHRLHGDYKNGI-------ISNEDSRIFTHNMRCIADYII 230

Query: 195 VGIGTVLADDPELTCRL 211
           +   T+  D+P L  R 
Sbjct: 231 ISGATLRDDNPLLDTRF 247


>gi|323349752|gb|EGA83967.1| Rib7p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 244

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 96/206 (46%), Gaps = 24/206 (11%)

Query: 137 FLHAYLTR--QVEKR--SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
           FL  YL    Q E      +TL  A S D  +         I+   +K   H LR   D 
Sbjct: 13  FLQNYLPNAGQTENTIVPFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDG 72

Query: 193 ILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLD-SKI----IKTALLAPVI 246
           ILVG GTVLAD+P L C+       +SP  II+D   K   D SK+    IK     P++
Sbjct: 73  ILVGSGTVLADNPGLNCKWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIV 132

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGR-GVTSLLVEGGAAVA 299
           +VT   +P++    ++++++   C         D KKL  IL     + S++VEGGA V 
Sbjct: 133 VVTS--EPII----KEQHVDYAICPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVI 186

Query: 300 HS-FINSRLVDSIILYRSQIVIGEGG 324
           +   + S +V+S+I+      +G  G
Sbjct: 187 NQLLLRSDIVNSLIITIGSTFLGSSG 212


>gi|323310096|gb|EGA63290.1| Rib7p [Saccharomyces cerevisiae FostersO]
          Length = 244

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 96/206 (46%), Gaps = 24/206 (11%)

Query: 137 FLHAYLTR--QVEKR--SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
           FL  YL    Q E      +TL  A S D  +         I+   +K   H LR   D 
Sbjct: 13  FLRNYLPNAGQTENTIVPFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDG 72

Query: 193 ILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLD-SKI----IKTALLAPVI 246
           ILVG GTVLAD+P L C+       +SP  II+D   K   D SK+    IK     P++
Sbjct: 73  ILVGSGTVLADNPGLNCKWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIV 132

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGR-GVTSLLVEGGAAVA 299
           +VT   +P++    ++++++   C         D KKL  IL     + S++VEGGA V 
Sbjct: 133 VVTS--EPII----KEQHVDYAICPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVI 186

Query: 300 HS-FINSRLVDSIILYRSQIVIGEGG 324
           +   + S +V+S+I+      +G  G
Sbjct: 187 NQLLLRSDIVNSLIITIGSTFLGSSG 212


>gi|149916459|ref|ZP_01904977.1| bifunctional deaminase-reductase-like protein [Roseobacter sp.
           AzwK-3b]
 gi|149809630|gb|EDM69485.1| bifunctional deaminase-reductase-like protein [Roseobacter sp.
           AzwK-3b]
          Length = 275

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 100/208 (48%), Gaps = 20/208 (9%)

Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214
           +I  S D  I      +  ++G      +H +RA  D +++G+ T L D P LT RL   
Sbjct: 55  QIGQSLDGRIATVTGDARDVSGPDGLAHLHRMRALVDGVVIGVRTALHDSPRLTVRL--C 112

Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR- 273
           +  +P RI++DP  +L  D+ +++ A     I++   D P      R   + +I  + R 
Sbjct: 113 KGPNPARIVIDPRGRLPDDAPLLR-ADGTRRIVIQAVDRP------RPAGVEVIRLNDRE 165

Query: 274 ---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIP 326
              D  ++L+ L  +G+++L++EGG      F+ +R +  + +  + ++IG G     +P
Sbjct: 166 SLLDPAQILSALRAKGLSTLMIEGGGITISRFLEARRLTRLQVAVAPLLIGAGPQGLTMP 225

Query: 327 SPLEEGYLEKNFMCVRRDY-FGSDVCLE 353
           SP E+  L        R +  GSDV  +
Sbjct: 226 SPTEK--LSDAIRPQTRAFSLGSDVVFD 251


>gi|151946542|gb|EDN64764.1| diaminohydroxyphoshoribosylaminopyrimidine deaminase [Saccharomyces
           cerevisiae YJM789]
          Length = 244

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 96/206 (46%), Gaps = 24/206 (11%)

Query: 137 FLHAYLTR--QVEKR--SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
           FL  YL    Q E      +TL  A S D  +         I+   +K   H LR   D 
Sbjct: 13  FLQNYLPNAGQTENTIVPFVTLTYAQSLDARVSKGPGVRTIISHPETKTMTHYLRHHHDG 72

Query: 193 ILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLD-SKI----IKTALLAPVI 246
           IL+G GTVLAD+P L C+       +SP  II+D   K   D SK+    IK     P++
Sbjct: 73  ILIGSGTVLADNPGLNCKWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIV 132

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGR-GVTSLLVEGGAAVA 299
           +VT   +P++    ++++++   C         D KKL  IL     + S++VEGGA V 
Sbjct: 133 VVTS--EPII----KEQHVDYAICPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVI 186

Query: 300 HS-FINSRLVDSIILYRSQIVIGEGG 324
           +   + S +V+S+I+      +G  G
Sbjct: 187 NQLLLRSDIVNSLIITIGSTFLGSSG 212


>gi|301093219|ref|XP_002997458.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262110714|gb|EEY68766.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 149

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 65/123 (52%), Gaps = 5/123 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNP-SVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEAG 64
           D  FM  A+  +  H    S N   V C++V+DG+V+  G +    G  HAE  AL +  
Sbjct: 8   DVAFMRLAV--AEAHRSQPSENAYCVGCVVVRDGLVLSTGFSRELPGNTHAEQVALHKLN 65

Query: 65  EEARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            EA+GAT Y T+EPCS     + PC Q  +  G+ RVV+ V +P   V  +G+Q L +  
Sbjct: 66  FEAQGATVYTTMEPCSTRVSGNVPCVQSCLRAGVARVVIGVMEPKTFVICKGVQLLQEAR 125

Query: 124 IIV 126
           + V
Sbjct: 126 VDV 128


>gi|162456661|ref|YP_001619028.1| riboflavin biosynthesis protein ribD [Sorangium cellulosum 'So ce
           56']
 gi|161167243|emb|CAN98548.1| Riboflavin biosynthesis protein ribD [Sorangium cellulosum 'So ce
           56']
          Length = 187

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 4/119 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGG---CPHAEVQ 58
           +S+   ++M  A+  +    G T  NP V C IV   G ++G G T   G      A  +
Sbjct: 1   MSNDPEKWMRLAIEEAERARGGTGDNPWVGCAIVSAAGELLGSGHTLGPGEDHAEIAAAR 60

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A    G    GAT Y TLEPCS +GR+P C++ I+E G+ RVV+ ++DP+ RV G G++
Sbjct: 61  AAHARGLSVVGATLYSTLEPCSFHGRTPACSRSIVERGVARVVIGMNDPNPRVDGEGVR 119


>gi|222478886|ref|YP_002565123.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Halorubrum lacusprofundi ATCC 49239]
 gi|222451788|gb|ACM56053.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Halorubrum lacusprofundi ATCC 49239]
          Length = 236

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 24/208 (11%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC- 209
           H+ +  A S D  +       + I+G    ++V  +RA +DA+LVG+GTVLADDP LT  
Sbjct: 2   HVVVNAAQSVDGKLATRRREQLRISGPEDFDRVDRVRAAADAVLVGVGTVLADDPHLTLD 61

Query: 210 -------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
                  RL   +  +P R+++D   +   D++I+  A     ++V+ +  P    A   
Sbjct: 62  EEDRRVERLRNGRPGNPARVVVDSTGRTPTDARILDDAATT-YLLVSASAPPERREALAA 120

Query: 263 KNINIIYC--------------DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
               ++                D  DL   +  L  RG+  L+VEGG  V +S   + LV
Sbjct: 121 AGAEVVVVEGGSGTERESESDGDHVDLVAGIHALAERGIDRLMVEGGGEVIYSCFAAGLV 180

Query: 309 DSIILYRSQIVIGEGGIPSPLE-EGYLE 335
           D + +Y   +VIG    P+  + EG+ E
Sbjct: 181 DELHVYVGSMVIGGRDAPTLADGEGFTE 208


>gi|302529252|ref|ZP_07281594.1| bifunctional enzyme deaminase/reductase [Streptomyces sp. AA4]
 gi|302438147|gb|EFL09963.1| bifunctional enzyme deaminase/reductase [Streptomyces sp. AA4]
          Length = 371

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 92/200 (46%), Gaps = 23/200 (11%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R H+ L  A S D  +  AG   + ++      +V  LRA++DAILVG GTV AD+P L 
Sbjct: 7   RPHVLLSAAQSLDGYLDDAGSTRLLLSNEDDFAEVDRLRAEADAILVGAGTVRADNPRLL 66

Query: 209 CRLNGLQE--------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND-DPVLALA 259
            R   L+           P+++ +    KL   S+         ++       D + A+A
Sbjct: 67  VRSAELRRARVAAGRPEQPVKVTVTSSGKLDPASRFFTLGDTEKLVYAPRGSADSLSAVA 126

Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
                +  +    R L+ +L  L  RG+ +LLVEGG AV   F+++ L D + L  + ++
Sbjct: 127 ----TVVEVGSPPR-LESVLDDLGARGIRTLLVEGGGAVHTQFLDAGLADELRLAIAPVM 181

Query: 320 IGE---------GGIPSPLE 330
           +G+         G  P PLE
Sbjct: 182 VGDPRAPRFLGPGAFPRPLE 201



 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 32  ACLIVKDGIVIGRGVTAYGGC-PHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSP- 86
           A + + DG V+  G +  G    HAE  AL   +        AT Y +LEPCS     P 
Sbjct: 250 AVVGLPDGTVLATGHSGEGDPHNHAEESALAKLDPHDPRLADATMYSSLEPCSDRASHPK 309

Query: 87  PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            C Q I+E  I RVV+   +P + V   G++ L   G
Sbjct: 310 SCTQLILETAIPRVVMAWREPSLFVEAEGVERLMAAG 346


>gi|323705214|ref|ZP_08116790.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535640|gb|EGB25415.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 137

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 15/123 (12%)

Query: 31  VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           V  ++VKDGI+IGRG     T      HAE+ A+++A +        GA+ YVTLEPC  
Sbjct: 19  VGAVVVKDGIIIGRGYNLKETEKDATQHAEINAIKDACKSIGDWRLNGASLYVTLEPC-- 76

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
               P CA  IIE  I+RV V  +  D   +G     L++K  +   +ME E K  ++ +
Sbjct: 77  ----PMCAGAIIESRIKRVYVGAESRDNGAAGTVYDLLNKKAEVYFGIMEDECKKLINDF 132

Query: 142 LTR 144
            +R
Sbjct: 133 FSR 135


>gi|126734556|ref|ZP_01750302.1| bifunctional deaminase-reductase-like protein [Roseobacter sp.
           CCS2]
 gi|126715111|gb|EBA11976.1| bifunctional deaminase-reductase-like protein [Roseobacter sp.
           CCS2]
          Length = 277

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 8/170 (4%)

Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214
           +I  S D  I      +  ++G      +H LRA +DA+++G+ T L DDP+LT RL   
Sbjct: 55  QIGQSLDGRIATETGDAQDVSGEDGLAHLHRLRALADAVVIGVKTALHDDPQLTVRLA-- 112

Query: 215 QEHSPMRIILDPHFKLSLDSKII-KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR 273
              SP R+++DP  +L  D++++  T+    VI     + P    A      + I     
Sbjct: 113 DGTSPARVVIDPDGRLPNDARLLTDTSARRIVIQAVAKERPAGVEAITLSRASWIAP--- 169

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
             + +L  L  RG  S+L+EGG      F+ + L++ + L  + ++IG G
Sbjct: 170 --EDILGALQERGFKSILIEGGGITITQFLEADLLNRLHLAIAPLLIGSG 217


>gi|85702872|ref|ZP_01033976.1| riboflavin specific deaminase, putative [Roseovarius sp. 217]
 gi|85671800|gb|EAQ26657.1| riboflavin specific deaminase, putative [Roseovarius sp. 217]
          Length = 237

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 93/210 (44%), Gaps = 18/210 (8%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
           H+  +I  S D  +      +  ++G      +H +RA  DA++VG+ T L DDP LT R
Sbjct: 15  HVVAQIGQSLDGRVATVSGDAADVSGPDGLAHLHRMRALVDAVIVGVKTALQDDPRLTVR 74

Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT-ENDDP--VLALAFRKKNINI 267
           L   Q  +P R+++DP  +L  D+++        V+I T E   P  V  +   +     
Sbjct: 75  LVAGQ--NPARVVIDPSGRLPNDARLFADDGARRVVIQTVEKSRPAGVEVITLPRSQWIS 132

Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
                  L+KL       G+  LLVEGGA     FI + L+  + +  + ++IG G  P 
Sbjct: 133 PAAIVAALRKL-------GLNHLLVEGGAITIARFIEADLLSRLHVAVAPLLIGAG--PQ 183

Query: 328 PLEEGYLEKNFMCVRRDY----FGSDVCLE 353
            L    + K     R +      GSDV  +
Sbjct: 184 GLTTQPIAKLAQARRPETQVYGLGSDVVFD 213


>gi|307083979|ref|ZP_07493092.1| riboflavin biosynthesis protein RibD [Mycobacterium tuberculosis
           SUMu012]
 gi|308366346|gb|EFP55197.1| riboflavin biosynthesis protein RibD [Mycobacterium tuberculosis
           SUMu012]
          Length = 206

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 98/226 (43%), Gaps = 35/226 (15%)

Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
           L  +L +Q     H+T K A S D     A   S  I+   ++  +H  RA +DAILVG 
Sbjct: 9   LREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAARLDLHRRRAIADAILVGT 68

Query: 198 GTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
           GTVLADDP LT RL    L    P+R                        ++V + D P 
Sbjct: 69  GTVLADDPALTARLADGSLAPQQPLR------------------------VVVGKRDIPP 104

Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
            A          +     +  ++L  L  R  T +L+EGG  +A +F+ +  ++ I+ Y 
Sbjct: 105 EARVL-NDEARTMMIRTHEPMEVLRALSDR--TDVLLEGGPTLAGAFLRAGAINRILAYV 161

Query: 316 SQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           + I++G G + +  + G    N     R  F S   +E +G +L L
Sbjct: 162 APILLG-GPVTAVDDVGV--SNITNALRWQFDS---VEKVGPDLLL 201


>gi|167044799|gb|ABZ09467.1| putative RibD C-terminal domain protein [uncultured marine
           crenarchaeote HF4000_APKG8D6]
          Length = 217

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 98/187 (52%), Gaps = 7/187 (3%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R  +    A++ D  +     G   ++    K +VH LR++ DAIL+G  TV  DDP L+
Sbjct: 5   RPRVIFSAAITLDGKLA-TRSGDSKLSSKKDKIRVHKLRSKVDAILIGKNTVKFDDPLLS 63

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL-AFRKKNINI 267
             ++ +++ +P+RIILD +  +S  S+I+KT    P IIV         L    K  + +
Sbjct: 64  --VHNIKKKNPIRIILDSNATISSSSRILKTCSKIPTIIVVSKKAQKKNLQKLEKFPVQV 121

Query: 268 IYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           I C  D   +KKLL IL  +G+ ++LVEGG     +F+   LVD  I+  +  ++G G  
Sbjct: 122 IVCGNDTVSIKKLLGILKKKGIKNILVEGGGTANWAFVKENLVDEAIITITPYLVG-GMT 180

Query: 326 PSPLEEG 332
            + L +G
Sbjct: 181 STTLVDG 187


>gi|21672711|ref|NP_660778.1| riboflavin biosynthesis protein RibD [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25091137|sp|Q8K9A3|RIBD2_BUCAP RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|21623354|gb|AAM67989.1| riboflavin biosynthesis protein RibD [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 217

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 98/217 (45%), Gaps = 19/217 (8%)

Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH 217
           +S D  I M    S  IT   S+  V   RA+S AIL    T+L DDP L  R     ++
Sbjct: 1   MSIDGRIAMKNGESRWITSKESREDVQKFRAKSSAILTSSATILNDDPLLNVRYKKFDKN 60

Query: 218 S-----------PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
           +           P+RII+D   ++    KII+T     ++++    D  +     K+ I 
Sbjct: 61  TLSTFPKKIFQQPIRIIIDSKNRVKKSHKIIQTK--EKILLMRLKLDKEIWPENTKQIII 118

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
             Y +  DL  +L  L    + +L +E G+ ++  F+   L+D II+Y +  ++G    P
Sbjct: 119 KPYKENIDLLCVLKFLGNLEINNLWIEAGSTLSGCFLKLELIDEIIIYIAPKILGHEAKP 178

Query: 327 SPLEEGYLEKNFMCVRRDY-----FGSDVCLEYIGKN 358
             +    L K F C++ D+      G D+ ++   KN
Sbjct: 179 LFIFNNQL-KLFDCLKFDFKDIRQIGPDIRIKLEPKN 214


>gi|72161280|ref|YP_288937.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermobifida
           fusca YX]
 gi|71915012|gb|AAZ54914.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermobifida
           fusca YX]
          Length = 239

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 87/192 (45%), Gaps = 17/192 (8%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           +R  + L  A+S D  I  A    + ++     ++V  LRA  DAILVG GT+ AD+P L
Sbjct: 14  ERPRVILSCAMSVDGYIDDASPERLRLSTEADFDEVDELRASCDAILVGAGTIRADNPRL 73

Query: 208 TCRLNGLQEHS-----PM---RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
             R    Q+       P    +++L     L   +++  T     ++ V ++     A A
Sbjct: 74  LVRSPERQQRRLAAGHPAHLRKVVLSTSGDLDPAARVFTTGDAGCLLYVADH----AAEA 129

Query: 260 FRKK-----NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
            R +      + ++     DL ++L  L  RGV  LLVEGG AV  +F+   L D + L 
Sbjct: 130 ARHRFAGTAGVEVVAAGAPDLDRVLADLARRGVRRLLVEGGGAVHTAFLTRNLADELRLA 189

Query: 315 RSQIVIGEGGIP 326
            +   +G+   P
Sbjct: 190 IAPFFVGDARAP 201


>gi|158425795|ref|YP_001527087.1| putative pyrimidine reductase [Azorhizobium caulinodans ORS 571]
 gi|158332684|dbj|BAF90169.1| putative pyrimidine reductase [Azorhizobium caulinodans ORS 571]
          Length = 246

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 91/198 (45%), Gaps = 9/198 (4%)

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +D  +E  G +F     + Q      +  ++  S D  I +    S  I G    + +H 
Sbjct: 1   MDDSIEDLGTLFAELNASPQF-----VIGQLGQSLDGRIALPSGESKYINGASGLDHIHR 55

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +RA  DA+LVG+GTV+ADDP+L  R   +    P R++LDP+ +L   ++ ++       
Sbjct: 56  IRAMVDAVLVGVGTVIADDPQLNVRR--VPGRDPARVVLDPNGRLPASARCLQND--GAR 111

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
            +V        AL    + + +      D   ++  L  RG+  +LVEGG     +F++ 
Sbjct: 112 RLVVRRPSAAGALPDGVERVEVEGTGALDPAAVVAALRARGLKRILVEGGPRTLSAFLDG 171

Query: 306 RLVDSIILYRSQIVIGEG 323
             +D   +  S +++G G
Sbjct: 172 GAIDHFHIIVSPVILGSG 189


>gi|307329731|ref|ZP_07608887.1| bifunctional deaminase-reductase domain protein [Streptomyces
           violaceusniger Tu 4113]
 gi|306884571|gb|EFN15601.1| bifunctional deaminase-reductase domain protein [Streptomyces
           violaceusniger Tu 4113]
          Length = 348

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 12/186 (6%)

Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233
           +TG   +  +H LRA +DA++VG GT +ADDP+LT R        P+R++LDP  ++ LD
Sbjct: 85  VTGEEDRRHLHRLRALADAVVVGAGTAVADDPQLTVR--ACAGTHPVRVVLDPRGRVPLD 142

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            ++        + +V    +   A     + + +   D     +L+  L  RG+  +L+E
Sbjct: 143 RRVFTDGSAPTLWVVGATGERRPAPPDGVELLTLTEPDAFAPHQLVRALRRRGLGRVLIE 202

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP------SPLEEGYLEKNFMCVRRDYFG 347
           GG      F+++  +  + +  + +++G+ GIP      +P+    L      VRR   G
Sbjct: 203 GGGVTVSRFLHAGALHRLYVTVAPVLLGD-GIPGLRFDGTPVMRDALRP---PVRRSTLG 258

Query: 348 SDVCLE 353
            D   E
Sbjct: 259 EDTLFE 264


>gi|307596329|ref|YP_003902646.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p
           yrimidine1-reductase [Vulcanisaeta distributa DSM 14429]
 gi|307551530|gb|ADN51595.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p
           yrimidine1-reductase [Vulcanisaeta distributa DSM 14429]
          Length = 219

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 90/185 (48%), Gaps = 15/185 (8%)

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
           ++H +RA  DAI+VG  TV+ DDP LT R +  ++  +P+R+++D   ++ L +K++   
Sbjct: 35  RLHEVRASVDAIMVGANTVINDDPSLTPRYVKAIR--NPIRVVIDGKLRIPLTAKVVTNK 92

Query: 241 LLAPVIIVTENDD--PVLALAFRKKNINIIYCDCRDLKKLLT-ILVGRGVTSLLVEGGAA 297
               +I+ TE  D   +  L      + ++  +  +LK +L  + + + V  +LVEGG  
Sbjct: 93  EAPTIIVTTEQADRNKIAQLMNMSVEVWVMGKERINLKDVLERLFMEKNVKRVLVEGGGH 152

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRDYFGSDV 350
           +    I   LVD I L  S  V G G       G P+ +E   L      V     G +V
Sbjct: 153 LNWELIKEGLVDEIRLTISPYVFGAGTSFIEGEGYPTTIEGPRLR--LKSVNICECGQEV 210

Query: 351 CLEYI 355
            L YI
Sbjct: 211 ILNYI 215


>gi|219115761|ref|XP_002178676.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217410411|gb|EEC50341.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 299

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 88/201 (43%), Gaps = 31/201 (15%)

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
           + VH LR  SDA+LVG GTV AD+P LT R     +  P+R++LDP  +L L  K  + A
Sbjct: 92  DMVHRLRCCSDAVLVGRGTVQADNPSLTVRRTPC-DRQPLRVVLDPRLEL-LRQKTDQGA 149

Query: 241 LLAPVI---------IVTENDDPVLAL----------AFRKKNINIIYCDCRDLKKLLTI 281
             A +           V + D+  L L            +    N+ + D      L   
Sbjct: 150 RFALLEDGLTTVVYHTVPDLDEDSLNLLETITVVYVPPTKPSGDNVPHGDYLSAATLTRD 209

Query: 282 LVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
           L  R GV  L+VEGG   A  F+    VD +IL  + +   +     PLE G  EK  + 
Sbjct: 210 LRDRFGVNHLMVEGGPLTARQFLYEHQVDRVILVHASLCFRQ-----PLESGLTEKVLVD 264

Query: 341 VRRDYFGSDVC----LEYIGK 357
              +  G++ C    +EY  +
Sbjct: 265 AGLEKLGTEPCGVDQIEYWSR 285


>gi|241950233|ref|XP_002417839.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase, putative; htp
           reductase, putative [Candida dubliniensis CD36]
 gi|223641177|emb|CAX45554.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase, putative
           [Candida dubliniensis CD36]
          Length = 304

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 99/236 (41%), Gaps = 62/236 (26%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           KR  +TL  A S D+ I         ++   +K   H LR++ D ILVGIGT+LADDP+L
Sbjct: 42  KRPFVTLTYAQSLDSKIAAQPGTQTKLSHLETKTMTHYLRSKHDCILVGIGTILADDPKL 101

Query: 208 TCRL-------------NGLQEHSPMRIILDPHFKLSL-----------------DSK-- 235
            CR                   H    +++DPH K                    D+K  
Sbjct: 102 NCRYIEPIIDKGVGVGVGVGVGHQIRPVVIDPHGKWQYHQSQLCRICQTTTIQQQDNKQN 161

Query: 236 ----------IIKTALLAPVIIVTENDDP-VLALAFRKKN------------INIIYCDC 272
                       + A LAP II+ E+  P V +     K             IN+     
Sbjct: 162 TSPPPPPPPPPPQAAGLAPFIIIDESTIPNVESEKMVNKQGGKYIKLPLLSTINVSINWV 221

Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFI---NSRLVDSIILYRSQIVIGEGGI 325
           + L+KL  +    G+ S+++EGGA + +  +   + +L+DSII+  + + +G  G+
Sbjct: 222 KILQKLYQL----GLKSIMIEGGAKIINDLLSINDYKLIDSIIITIAPVFLGCNGV 273


>gi|193884346|dbj|BAG54993.1| riboflavin biosynthesis protein ribG [Amphibacillus xylanus]
          Length = 198

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 81/175 (46%), Gaps = 11/175 (6%)

Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214
           K A++ D  + +       ITG  +   V   R     ILVG  T+L D+P L   L   
Sbjct: 1   KQAITLDGKLSL-DSKRTAITGKDTYQYVRKERNHYQGILVGSQTILTDNPFL---LGTD 56

Query: 215 QEHSPMRIILDPHFKL--SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC 272
           Q   P+RIILD   +L   LD  +      +PV I TE    +       K++  I    
Sbjct: 57  QTLHPIRIILDRRGRLFNKLDLNVFINQA-SPVWIFTERKVNIKL----PKHVEAIVLKS 111

Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
             +K ++  L  R + SL VEGGA V  SF+NS   D +I Y +  VIG  G+P+
Sbjct: 112 ATVKSIIKELTRRNIHSLYVEGGAKVHDSFLNSGYWDQMITYIAPKVIGGNGVPA 166


>gi|70607877|ref|YP_256747.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
           acidocaldarius DSM 639]
 gi|68568525|gb|AAY81454.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
           acidocaldarius DSM 639]
          Length = 214

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 5/147 (3%)

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
           I K + H LRA+ DAI+VG  TV  D+P LT +    ++  P+R+I+     L + SKI 
Sbjct: 32  IDKQRQHQLRAEVDAIMVGGNTVRIDNPSLTVKYAKKKDKDPIRVIVSKSLNLDVSSKIF 91

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGA 296
               L  V   +EN      L  R     ++     +L  + + L     V  L++EGG 
Sbjct: 92  SIPPLTVVYTKSENRSKQYELEKR----GVVVRRFNELSDVFSDLYESFNVRRLMIEGGG 147

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +  S I+ +L D I +  S  + G G
Sbjct: 148 NLIWSVIHEKLYDEIRVTVSPRIFGNG 174


>gi|108805370|ref|YP_645307.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Rubrobacter xylanophilus DSM 9941]
 gi|108766613|gb|ABG05495.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Rubrobacter xylanophilus DSM 9941]
          Length = 230

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 87/186 (46%), Gaps = 24/186 (12%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
           +TL  A + D  +  A   S  I+   S  + H LRA  DA++VG+GTV  DDP LT RL
Sbjct: 11  VTLSYAQTLDGRLATAAGSSQWISCESSLARAHALRAGHDAVMVGVGTVCRDDPRLTVRL 70

Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLA-PVIIVTENDDPVLALAFRKKNINIIYC 270
             +   +P+R+++D   +    + ++        V+ VTE        A R++       
Sbjct: 71  --VPGENPLRVVVDSTLRTPPSAAVLSDGGAGRTVLAVTER-------ASRERCARAERL 121

Query: 271 DCRDLKKLLTILVGR-------------GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
             R L +L     GR             GV S++VEGGA++  SF+  RL D + +  + 
Sbjct: 122 GARVL-RLPEDGEGRVELAALLAALWESGVRSVMVEGGASLITSFLRERLADRLAVCVAP 180

Query: 318 IVIGEG 323
            ++G G
Sbjct: 181 KLLGRG 186


>gi|213421646|ref|ZP_03354712.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 182

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 87/188 (46%), Gaps = 21/188 (11%)

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +L R      ++ LK+  S D    MA   S  IT   ++  V  LRAQS AIL    TV
Sbjct: 1   FLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQRLRAQSHAILTSSATV 60

Query: 201 LADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           LADDP LT R   L         QE+   P+RI++D   +++   +I++      +    
Sbjct: 61  LADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAHRIVQQPGETWIARTQ 120

Query: 250 END----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           E+     D V  ++    N ++      DL  L+  L  + + S+ VE G  +A + + +
Sbjct: 121 EDSHAWPDSVRTISVPAHNGHL------DLVVLMMQLGRQQINSIWVEAGPGLAGALLQA 174

Query: 306 RLVDSIIL 313
            LVD +I+
Sbjct: 175 GLVDELIV 182


>gi|296536225|ref|ZP_06898343.1| riboflavin biosynthesis protein RibD [Roseomonas cervicalis ATCC
           49957]
 gi|296263447|gb|EFH09954.1| riboflavin biosynthesis protein RibD [Roseomonas cervicalis ATCC
           49957]
          Length = 280

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 79/179 (44%), Gaps = 10/179 (5%)

Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214
           ++A + D  I  AG  S  I G       H LRA  DA+LVG GTV  DDP LT R    
Sbjct: 64  RLAQTLDGRIATAGGSSQWIGGPGDLLHTHRLRALCDAVLVGAGTVKHDDPRLTTR--DC 121

Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR- 273
               P+RIILD    L  + ++       P ++V   D     L   +     +    R 
Sbjct: 122 PGPDPVRIILDTSRTLGTEYRVFAEG-GPPTLLVCAEDAAERGLPRDRHGAAEVLRAPRA 180

Query: 274 -----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
                D+  LL  L  RG+  + VEGG      F+ +  +D + +  + +++G  GIP+
Sbjct: 181 AIGGLDIATLLPKLAARGLRRIFVEGGGLTVSRFLAAGCLDRLHVTVAPVLLGS-GIPA 238


>gi|183220072|ref|YP_001838068.1| putative riboflavin biosynthesis protein RibD [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910192|ref|YP_001961747.1| pyrimidine reductase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167774868|gb|ABZ93169.1| Pyrimidine reductase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167778494|gb|ABZ96792.1| Putative riboflavin biosynthesis protein RibD:Riboflavin-specific
           deaminase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 213

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 95/189 (50%), Gaps = 11/189 (5%)

Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLS 231
           +T    K Q+ + R+QSDA+L+G  ++L D+P +  R   N L   +P  +IL     L 
Sbjct: 25  LTSSEDKTQMDVYRSQSDAVLIGKNSILNDNPIVKIRAVPNAL---NPRPVILVRKGTLP 81

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKK-NINIIYCDCRDLKKLLTILVGRGVTSL 290
            D  + + +   P+II T+++   +  +   K  I  +  D  D KK+  IL  +G  ++
Sbjct: 82  PDKHVFEESDHIPLIICTKSNLKEIKTSLENKAEIFALDSDDIDPKKVTGILKRKGYKNV 141

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDY 345
           L+EGG  +  SF+ + LVD I +     +IG+ G+    +      G+ ++N+   +   
Sbjct: 142 LLEGGPKLNFSFLEADLVDRIYITVVPYIIGKTGLAGIADRNSELPGFDKQNWTLKQHFT 201

Query: 346 FGSDVCLEY 354
            G+++ L Y
Sbjct: 202 KGNEIFLVY 210


>gi|126179344|ref|YP_001047309.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanoculleus
           marisnigri JR1]
 gi|125862138|gb|ABN57327.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanoculleus
           marisnigri JR1]
          Length = 228

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 107/225 (47%), Gaps = 29/225 (12%)

Query: 149 RSHITLKIAVSQDNMIGMA-GCGSVPITGFISKNQ---VHLLRAQSDAILVGIGTVLADD 204
           R H+ +   ++ D  + +  G  S  +  +++      +H  RA+ DAI+VG  T+  D+
Sbjct: 6   RPHVLMMSEITVDGKLTLKRGASSKILMKYMAPETELLLHQTRAEYDAIMVGANTIRIDN 65

Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA-FRKK 263
             LT RL  ++  SP+R+I      +  D+ ++     A  +I      P   +A  R+ 
Sbjct: 66  SFLTVRL--VEGKSPLRVIPSSRADIPPDANVLGPD--ARTVIAVSEAAPAENVARLRES 121

Query: 264 NINIIYCDCR--DLKKLLTILV-GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
            ++++    +  DL +L+ IL    GV  +++EGG  +  + +N RLVD I L     ++
Sbjct: 122 GVDVVVAGEKEVDLPELMGILKRDYGVDRMMIEGGPTLNWAMLNHRLVDEIRLIHLPFIV 181

Query: 321 GEGGIPSPL--------EEGY---LEKNFMCVRRDYFGSDVCLEY 354
           G    PS +        EE +   L+++FMC      GS++  E+
Sbjct: 182 GGADTPSLVGGMHIETEEEMFRLSLKRHFMC------GSNLVTEW 220


>gi|145591565|ref|YP_001153567.1| hypothetical protein Pars_1352 [Pyrobaculum arsenaticum DSM 13514]
 gi|145283333|gb|ABP50915.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Pyrobaculum arsenaticum DSM 13514]
          Length = 224

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 86/178 (48%), Gaps = 8/178 (4%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R  + +  AV+ D  I  +  G   ++      ++H +RA  DA++VG  T + D+P LT
Sbjct: 2   RPRVYMMAAVTVDGRIA-SKTGYSKLSCPYDLRRLHAMRAMVDAVVVGANTAITDNPRLT 60

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA-FRKKNINI 267
            R    +  +P+R+++D   +   D ++   + L   I+ T +  P   +   ++K I +
Sbjct: 61  VRYA--EGRNPIRVLIDGALRAPTDLRLFDRSALT--IVFTTSKAPSEKIKELQEKGIEV 116

Query: 268 IYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           +  +    D  +++  L  RGV  +L+EGG      F+   LVD +I+  +  V G G
Sbjct: 117 VVTEGSAVDPAEVVAHLSKRGVEKVLLEGGGKTNWEFLKRCLVDELIITVTPYVFGRG 174


>gi|322711515|gb|EFZ03088.1| hypothetical protein MAA_00162 [Metarhizium anisopliae ARSEF 23]
          Length = 243

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 90/199 (45%), Gaps = 26/199 (13%)

Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL- 211
           TL  A S D+ + ++      I+G  S+   H  R++ D IL+G+GT +ADDP L CR+ 
Sbjct: 5   TLTFATSLDSSLTLSPGAPTAISGPRSEAMTHYPRSRHDGILIGVGTAVADDPSLNCRIA 64

Query: 212 ------NGLQEHSPMRIILDP--HFKLSLDSKIIKTALLA---PVIIVTENDDP-----V 255
                     +  P  +++DP   ++ + +SK+ K        P  +VT    P      
Sbjct: 65  GVGGYGGDGLDGQPRPVVIDPTARWEFTDNSKLFKLCREGRGRPPWVVTALRKPPADIRA 124

Query: 256 LALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL-- 307
           L   +  K IN+            D   LL      G+ S++VE G  + +S ++ +   
Sbjct: 125 LLEKYGGKYINVEIPTSNIGEHHLDWNLLLVRFKENGLNSVMVEAGGQIINSLLSPQYQP 184

Query: 308 -VDSIILYRSQIVIGEGGI 325
            +D +I+  +   +G+GG+
Sbjct: 185 NIDMVIVTIAPTWLGQGGV 203


>gi|320169275|gb|EFW46174.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 1344

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 46/128 (35%), Positives = 70/128 (54%), Gaps = 4/128 (3%)

Query: 5    SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEE- 62
            S D R+M+ A++ +   V +  T   V C+IV++G+V+  G +    G  HAE  AL++ 
Sbjct: 1190 SNDWRYMAMAIQQANQSVPV-ETAYCVGCVIVQNGVVLSSGFSRELPGNTHAEECALKKL 1248

Query: 63   AGEEARGATAYVTLEPC-SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
              E+A+GAT Y T+EPC +    +  C   II   I RVV+ V +P   V   G+  L +
Sbjct: 1249 TPEQAQGATVYTTMEPCTTRLSGNVCCTDHIINNRIARVVIGVREPAEFVVCIGIDRLEK 1308

Query: 122  KGIIVDRM 129
             GI V R+
Sbjct: 1309 AGIQVTRL 1316


>gi|54025279|ref|YP_119521.1| putative riboflavin-specific deaminase [Nocardia farcinica IFM
           10152]
 gi|54016787|dbj|BAD58157.1| putative riboflavin-specific deaminase [Nocardia farcinica IFM
           10152]
          Length = 228

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 10/188 (5%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL- 207
           R ++ L +A S D  +   G   + ++     ++V  +RA+SDAILVG  TV  D+P L 
Sbjct: 3   RPYVLLSVATSVDGYLDDTGPERLLLSNDADFDRVDQVRAESDAILVGAATVRTDNPRLI 62

Query: 208 -------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIK--TALLAPVIIVTENDDPVLAL 258
                    R+   +   P+++ +     L   +K     T    PV+  T       A 
Sbjct: 63  VKSEARQAARVAAGRSRHPLKVTVTATGDLDPAAKFWHHGTEDHRPVVYTTSAGHEKTAQ 122

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
                   +      D   LL  L GRGV  L+VEGG  +  +F++ RL D ++L     
Sbjct: 123 LLDGLADVVDLGPAIDFGALLDDLGGRGVRRLMVEGGGHIHTAFLSHRLADELLLAIGPT 182

Query: 319 VIGEGGIP 326
           V+G+   P
Sbjct: 183 VVGQANAP 190


>gi|124485467|ref|YP_001030083.1| hypothetical protein Mlab_0643 [Methanocorpusculum labreanum Z]
 gi|124363008|gb|ABN06816.1| bifunctional deaminase-reductase domain protein [Methanocorpusculum
           labreanum Z]
          Length = 225

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 89/182 (48%), Gaps = 14/182 (7%)

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           +H  RA+ DAI+VG  T+  D+  LT R+  ++  +P+R+I +    L L++ +  T   
Sbjct: 44  LHETRAEYDAIMVGSSTIRIDNSFLTVRM--VEGENPLRVIPNSLADLPLEANVFDTTKA 101

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGR-GVTSLLVEGGAAVA 299
             V+ V+E        AF  + ++++ C  D  D  +L+ IL  +  +  L++EGG  + 
Sbjct: 102 RTVLAVSEKAPKDRIDAFTARGVDVVVCGEDRVDFVQLMNILSAKYQIKKLIIEGGPTLN 161

Query: 300 HSFINSRLVDSIILYRSQIVIGE-------GGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
              ++  LVD I L     ++G        GG+P   E   ++ +    +   +G+++  
Sbjct: 162 WHMLHHGLVDEIRLIHMPFIVGGSDTPSLVGGMPLASENDMIKLDLRSTK--MYGTNLVT 219

Query: 353 EY 354
           EY
Sbjct: 220 EY 221


>gi|167629244|ref|YP_001679743.1| cytidine and deoxycytidylate deaminase zinc-binding region protein,
           putative [Heliobacterium modesticaldum Ice1]
 gi|167591984|gb|ABZ83732.1| cytidine and deoxycytidylate deaminase zinc-binding region protein,
           putative [Heliobacterium modesticaldum Ice1]
          Length = 152

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 68/152 (44%), Gaps = 22/152 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D +FM  AL   R           + C+IVKDG VIGRG     T      HAEV A+++
Sbjct: 5   DDKFMGLALEEGR--QAYAKGEVPIGCVIVKDGEVIGRGHNLRETEKNPVAHAEVLAIQD 62

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G    GAT YVT+EPC      P CA  I+   I RVV  V DP    +G    
Sbjct: 63  AANRIGGWRLAGATLYVTVEPC------PMCAGAIVLARIPRVVFAVMDPKGGAAGTCFN 116

Query: 118 -----WLSQKGIIVDRMMESEGKIFLHAYLTR 144
                W + +  ++  + E E +  + ++  R
Sbjct: 117 ILESPWTNHRVSVISGVREGEARELMQSFFQR 148


>gi|149202756|ref|ZP_01879728.1| bifunctional deaminase-reductase-like protein [Roseovarius sp.
           TM1035]
 gi|149144038|gb|EDM32072.1| bifunctional deaminase-reductase-like protein [Roseovarius sp.
           TM1035]
          Length = 272

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 12/176 (6%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
            +  +I  S D  +      +  ++G      +H +RA  DA++VG+ T L D+P LT R
Sbjct: 51  QVVAQIGQSLDGRVATVTGDAADVSGPDGLAHLHRMRALVDAVIVGVKTALHDNPRLTVR 110

Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270
           L  +   +P R+++DP  +L  D+++         I++ E D P      R   + +I  
Sbjct: 111 L--VSGQNPARVVIDPSGRLPNDARLFAEDGTR-RIVIQEVDKP------RPAGVEVIQL 161

Query: 271 DCRDL---KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
              D      +++ L   G+  L+VEGGA     FI + L+  + +  + ++IG G
Sbjct: 162 PRSDWISPPAIVSALRKVGLHHLMVEGGAITIARFIEADLLARLHVAVAPLLIGAG 217


>gi|255718859|ref|XP_002555710.1| KLTH0G15576p [Lachancea thermotolerans]
 gi|238937094|emb|CAR25273.1| KLTH0G15576p [Lachancea thermotolerans]
          Length = 250

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 92/211 (43%), Gaps = 27/211 (12%)

Query: 137 FLHAYLTR----QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
           FL+ YL         ++  +TL  A S D+ I         I+   +K   H LR + DA
Sbjct: 13  FLYQYLPAAAAGNASQKPFVTLTYAQSLDSRISKGKGLRTTISHPETKTMTHYLRYKHDA 72

Query: 193 ILVGIGTVLADDPELTCRL-----NGLQEHSPMRIILDPHFKLSLD----SKIIKTALLA 243
           I++G GT LADDP L C+            SP  +I+DP  K   +     ++ +     
Sbjct: 73  IMIGCGTALADDPGLNCKWAPAGKTSSTSSSPRPVIIDPQGKWDFEGSKMQQLFREDAGK 132

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR-------DLKKLLTILVGR-GVTSLLVEGG 295
           P +IV  +   +L     K++ +  Y           D   L+ +L    G  S++VEGG
Sbjct: 133 PPVIVVRDLGSIL-----KRHPDATYVSAPSSPAGRFDWLTLMLLLKSEFGFESIMVEGG 187

Query: 296 AAVAHSFIN-SRLVDSIILYRSQIVIGEGGI 325
           A V +  ++   +VDS+I+      +G  G+
Sbjct: 188 ALVINQLLSRPDVVDSLIVTVGAKYLGSEGV 218


>gi|167044545|gb|ABZ09219.1| putative RibD C-terminal domain protein [uncultured marine
           crenarchaeote HF4000_APKG6N3]
          Length = 217

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 98/187 (52%), Gaps = 7/187 (3%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R  +    A++ D  +     G   ++    K +VH LR++ DAIL+G  TV  DDP L+
Sbjct: 5   RPRVIFSAAITLDGKLATR-SGDSKLSSKKDKIRVHKLRSKVDAILIGKNTVKIDDPLLS 63

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII-VTENDDPVLALAFRKKNINI 267
             ++ +++ +P+RIILD +  +   S+I+KT    P II V++           K  + +
Sbjct: 64  --VHNIKKKNPIRIILDSNATIRSSSRILKTCSKIPTIIAVSKKAQKKNLQKLEKFPVQV 121

Query: 268 IYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           I C  D   +KKLL IL  +G+ ++LVEGG     +F+   LVD  I+  +  ++G G  
Sbjct: 122 IVCGNDTVSIKKLLGILKKKGIKNILVEGGGTANWAFVKENLVDEAIITITPYLVG-GMT 180

Query: 326 PSPLEEG 332
            + L +G
Sbjct: 181 ATTLVDG 187


>gi|213615891|ref|ZP_03371717.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 198

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 27/203 (13%)

Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRI 222
           IT   ++  V  LRAQS AIL    TVLADDP LT R   L         QE+   P+RI
Sbjct: 2   ITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRI 61

Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKL 278
           ++D   +++   +I++      +    E+     D V  ++    N ++      DL  L
Sbjct: 62  VIDSQNRVTPAHRIVQQPGETWIARTQEDSHAWPDSVRTISVPAHNGHL------DLVVL 115

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGY 333
           +  L  + + S+ VE G  +A + + + LVD +I+Y +  ++G        +P  LE+  
Sbjct: 116 MMQLGRQQINSIWVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLA 174

Query: 334 LEKNFMCVRRDYFGSDVCLEYIG 356
               F      + G DVCL  + 
Sbjct: 175 DAPQFTFSEIRHVGPDVCLHMVS 197


>gi|167043956|gb|ABZ08643.1| putative RibD C-terminal domain protein [uncultured marine
           crenarchaeote HF4000_APKG3J11]
          Length = 217

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 93/176 (52%), Gaps = 6/176 (3%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R  +    A++ D  +     G   ++    K +VH LR++ DAIL+G  TV  DDP L+
Sbjct: 5   RPRVIFSAAITLDGKLATR-SGDSKLSSKKDKIRVHKLRSKVDAILIGKNTVKIDDPLLS 63

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII-VTENDDPVLALAFRKKNINI 267
             ++ +++ +P+RIILD +  +   S+I+KT    P II V++           K  + +
Sbjct: 64  --VHNIKKKNPIRIILDSNATIRSSSRILKTCSKIPTIIAVSKKAQKKNLQKLEKFPVQV 121

Query: 268 IYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           I C  D   +KKLL IL  +G+ ++LVEGG     +F+   LVD  I+  +  ++G
Sbjct: 122 IVCGNDTVSIKKLLGILKKKGIKNILVEGGGTANWAFVKENLVDEAIITITPYLVG 177


>gi|300236|gb|AAC60554.1| riboflavin biosynthesis [Saccharomyces cerevisiae]
          Length = 183

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 20/156 (12%)

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSK-----I 236
            H LR   D ILVG GTVLAD+P L C+       +SP  II+D   K   D        
Sbjct: 2   THYLRHHHDGILVGSGTVLADNPGLNCKWGPDPAANSPRPIIIDTKQKWRFDGSKMQELF 61

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGR-GVTS 289
           IK     P+++VT   +P++    ++++++   C         D KKL  IL     + S
Sbjct: 62  IKRQGKPPIVVVTS--EPII----KEQHVDYAICPINDTTKLVDWKKLFEILKEEFNIRS 115

Query: 290 LLVEGGAAVAHS-FINSRLVDSIILYRSQIVIGEGG 324
           ++VEGGA V +   + S +V+S+I+      +G  G
Sbjct: 116 VMVEGGANVINQLLLRSDIVNSLIITIGSTFLGSSG 151


>gi|124027442|ref|YP_001012762.1| pyrimidine reductase, riboflavin biosynthesis, RibD [Hyperthermus
           butylicus DSM 5456]
 gi|123978136|gb|ABM80417.1| Pyrimidine reductase, riboflavin biosynthesis, RibD [Hyperthermus
           butylicus DSM 5456]
          Length = 250

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 5/133 (3%)

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           ++ LLR  +DA+++G  T L DDP L  RL    E    R+++D   ++S   ++++   
Sbjct: 37  RLRLLRGAADAVMIGANTALLDDPSLRKRLEPRSEKY-YRVVVDGRLRISASLRLVREP- 94

Query: 242 LAPVIIVTE-NDDPVLALAFRKKNINIIYCD-CRDLKKLLTIL-VGRGVTSLLVEGGAAV 298
             PVI+ T         L  R   ++++  +   DL + L IL V  GV  LLVEGG  +
Sbjct: 95  EPPVIVFTAVESQRARELEERGVRVHVVGSNGVVDLARALEILAVEYGVERLLVEGGGRL 154

Query: 299 AHSFINSRLVDSI 311
            +S ++SRLVD +
Sbjct: 155 NYSLLSSRLVDEV 167


>gi|149375142|ref|ZP_01892914.1| bifunctional deaminase-reductase-like protein [Marinobacter
           algicola DG893]
 gi|149360506|gb|EDM48958.1| bifunctional deaminase-reductase-like protein [Marinobacter
           algicola DG893]
          Length = 290

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 9/180 (5%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           RS +  ++  S D  I      S  I G      +H LRA S+A++VG GT   D+P LT
Sbjct: 73  RSRVVGQMGQSLDGRIATVTGASKFINGEDGITHLHRLRAVSEAVIVGAGTASTDNPRLT 132

Query: 209 CR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
            R  +G+   +P+R+++D + ++  DS  + +   +P + +   D         +  +  
Sbjct: 133 VRKTSGI---NPVRVVIDRNHRVP-DSHHLFSDEASPTLRLVAGDYHAGDKLAPRHGVTD 188

Query: 268 IYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           + C    D  D   +L +L   G+  + VEGG      F+N+ L+D + +  + ++IG G
Sbjct: 189 VPCLGRDDTTDPAHILEVLADFGLRKIFVEGGGLTVSEFLNAALLDRLHVMVAPMIIGSG 248


>gi|237752793|ref|ZP_04583273.1| riboflavin biosynthesis protein RibD [Helicobacter winghamensis
           ATCC BAA-430]
 gi|229376282|gb|EEO26373.1| riboflavin biosynthesis protein RibD [Helicobacter winghamensis
           ATCC BAA-430]
          Length = 348

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 100/243 (41%), Gaps = 44/243 (18%)

Query: 20  WHVGL-TSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATA----- 72
           W   L T  NP+VA L++ ++G ++        G PHAEV AL++A     G  A     
Sbjct: 15  WKEQLKTLPNPAVAALVLDENGAIVSLESHKECGKPHAEVLALQKAYAALSGDNAILSLK 74

Query: 73  ----------------------YVTLEPCS--HYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                                 YVTLEPCS    G++P CA  +     + V++   D D
Sbjct: 75  ESQAIHSYLLKNAIPIFKDTMLYVTLEPCSSNKKGKTPSCATLLKTLKPKCVIIATQDCD 134

Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT------RQVEKRSHITL-KIAVSQD 161
               G G Q L + GI V +  E E    +H          R ++ +    L K A   D
Sbjct: 135 KSAKG-GAQELIEAGICVIKAWEVEALQAIHKQANALLLPFRLLQTQGKFMLFKYASRLD 193

Query: 162 NMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR 221
             I         I+   +++ +H  R ++D +L+   +V  D+P L  R   L++ +P  
Sbjct: 194 GSIDGGQ-----ISTHQAQSLMHDYRTKADVLLISGESVRVDNPRLDTRFATLEQRNPNV 248

Query: 222 IIL 224
            IL
Sbjct: 249 AIL 251


>gi|325068553|ref|ZP_08127226.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Actinomyces oris K20]
          Length = 111

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/100 (39%), Positives = 50/100 (50%), Gaps = 4/100 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67
           M  ALR +         NP V C+I+  DG V+  G     G  HAEV AL         
Sbjct: 12  MQRALRAAASPDAPPGPNPRVGCVILSPDGDVLAEGHHRGAGTAHAEVDALANLAAAGAS 71

Query: 68  -RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
            RG TA VTLEPC+H  R+ PC Q +++ G+  V+   DD
Sbjct: 72  ARGTTAVVTLEPCNHQSRTGPCVQALLDAGVAEVIYAQDD 111


>gi|317178213|dbj|BAJ56002.1| riboflavin biosynthesis protein [Helicobacter pylori F16]
          Length = 344

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 41/242 (16%)

Query: 20  W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63
           W H  L   NPSVAC+++ K+  ++          PHAEV A +              E 
Sbjct: 16  WEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPSLKNDLEK 75

Query: 64  GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            E+ +  + +               +TLEPC+ YG++P C+  +     +RVV+  ++ +
Sbjct: 76  LEDPKTLSDFLKTHHDSAFKDCVFLITLEPCNSYGKTPACSGLLEVLKPKRVVIATEENE 135

Query: 109 VRVSGRG-LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA 167
            +  G   LQ    +G++ +  +E++ K  L  + T + + R ++  K+A+    M G  
Sbjct: 136 AKKGGLARLQKARIEGVVCES-LENKAKDLLLPFRTMEQKGRFNL-FKLALR---MNGDY 190

Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILD 225
             G   ITG  S    H  RA  D ++V   T+  D+P L  R   +  Q  +P   IL 
Sbjct: 191 YHGK--ITGQKSVIFTHNQRAVCDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPNIAILS 248

Query: 226 PH 227
            H
Sbjct: 249 KH 250


>gi|170740596|ref|YP_001769251.1| deaminase-reductase domain-containing protein [Methylobacterium sp.
           4-46]
 gi|168194870|gb|ACA16817.1| bifunctional deaminase-reductase domain protein [Methylobacterium
           sp. 4-46]
          Length = 243

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 90/198 (45%), Gaps = 30/198 (15%)

Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
           L + L+     +  +  ++  S D  I      S  I    + + +H LRA  DAI+VGI
Sbjct: 22  LFSPLSEGSTVQPFVIAQLGQSLDGRIATLSGDSKYINRGAALDHLHRLRAHVDAIVVGI 81

Query: 198 GTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK------------TALLAPV 245
           GTVLADDP LT R   +  HSP R+I+DP  ++   ++ ++             A + P 
Sbjct: 82  GTVLADDPLLTVRR--VPGHSPARVIIDPAGRIPPGAQCLREDGARRILVCGPQARVPPG 139

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           + V   ++P     F  + +             +  L   G   +L+EGGA    +FI++
Sbjct: 140 VEVLRMEEPS---PFPPRAV-------------IAALGRLGFARILIEGGARTISAFIDA 183

Query: 306 RLVDSIILYRSQIVIGEG 323
             +D + +  + +++G G
Sbjct: 184 GAIDRLHVMVAPLLLGSG 201


>gi|317014921|gb|ADU82357.1| riboflavin biosynthesis protein [Helicobacter pylori Gambia94/24]
          Length = 344

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 111/255 (43%), Gaps = 46/255 (18%)

Query: 24  LTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE----------------- 65
           L   NPSVAC+++ K+  ++          PHAEV A + A +                 
Sbjct: 21  LALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPHLKNDLEKLEDPK 80

Query: 66  ------EARGATAY------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 + R   A+      +TLEPC+ YG++P C++ +     +R V+  ++ + +  G
Sbjct: 81  ILSDFLKTRHDNAFKDCVFLITLEPCNSYGKTPACSELLEILKPKRAVIAAEENEAKKGG 140

Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSV 172
                 +    I+ R +E++ K  L  +  R +E++    L K+A+    M G    G  
Sbjct: 141 LARLQKAHIETIICRNLENKAKNLLLPF--RIMEQKGRFNLFKLALR---MNGDYYHGK- 194

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIIL-----D 225
            ITG  S    H  RA  D +++   T+  D+P L  R   N  Q  +P   IL     +
Sbjct: 195 -ITGQKSVIFTHNQRAVCDTLIISGKTIRTDNPLLDTRFCDNFYQGKNPNIAILSKHSIN 253

Query: 226 PHFK-LSLDSKIIKT 239
           PH K  S+ ++++ T
Sbjct: 254 PHSKVFSVPNRLVNT 268


>gi|317011639|gb|ADU85386.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Helicobacter pylori SouthAfrica7]
          Length = 344

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 94/219 (42%), Gaps = 38/219 (17%)

Query: 24  LTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EAGEEAR 68
           L   NPSVAC+++ K+  ++   V      PHAEV A +              E  E+ +
Sbjct: 21  LALENPSVACMVLDKNHEILSLEVHKKAKTPHAEVLAAQSALKILRPSLKSDLEKLEDPK 80

Query: 69  GATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
             + +               +TLEPC+ YG++P C++ +     +RVV+  ++ + +  G
Sbjct: 81  ILSGFLKTHHNNAFKDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIATEENEAKKGG 140

Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSV 172
                 +       + +E++ K  L  +  R +EK+    L K+A+    M G    G  
Sbjct: 141 LARLKKAHVEAFTCQSLENKAKDLLLPF--RIMEKKGRFNLFKLALR---MNGDYKHGK- 194

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
            ITG  S    H  RA  D ++V   T+  DDP L  R 
Sbjct: 195 -ITGQKSAIFTHNQRATCDTLIVSGKTIRTDDPLLDARF 232


>gi|15646114|ref|NP_208296.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori 26695]
 gi|2314679|gb|AAD08541.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori 26695]
          Length = 344

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 140/340 (41%), Gaps = 78/340 (22%)

Query: 20  W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63
           W H  L   NPSVAC+++ K+  ++          PHAEV A +              E 
Sbjct: 16  WEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRPSLKNDLEK 75

Query: 64  GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            E+ +  + +               +TLEPC+ YG++P C++ +     +RVV+  ++ +
Sbjct: 76  LEDPKTLSDFLKTHHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIATEENE 135

Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMA 167
            +  G      ++   I+   +E++ K  L  +  R +E++    L K+A+    M G  
Sbjct: 136 AKKGGLARLQKARIETIICHNLENKAKDLLLPF--RVMEQKGRFNLFKLALR---MNGDY 190

Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILD 225
             G   ITG  S    H  RA  D ++V   T+  D+P L  R   +  Q  +P   IL 
Sbjct: 191 HHGK--ITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPNIAILS 248

Query: 226 PHFKLSLD--SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV 283
              K S+D  SK+      AP  +V    DP                  +DL       +
Sbjct: 249 ---KRSIDPNSKVFS----APNRLVNTFHDP------------------KDLP------L 277

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            +G     +EGG  +  S  +   +D+++L+    +IGE 
Sbjct: 278 EKGFN--FIEGGWELFESLRDK--IDALLLHSHASMIGEA 313


>gi|330467994|ref|YP_004405737.1| deaminase-reductase domain-containing protein [Verrucosispora maris
           AB-18-032]
 gi|328810965|gb|AEB45137.1| deaminase-reductase domain-containing protein [Verrucosispora maris
           AB-18-032]
          Length = 235

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 88/212 (41%), Gaps = 46/212 (21%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           +R ++ L  A S D  I  A    + ++     ++V  +RA  DAILVG GTV  DDP L
Sbjct: 8   RRPYVLLSCATSIDGYIDDATDERLMLSNDADLDRVDEVRASCDAILVGAGTVRRDDPRL 67

Query: 208 TCR---------LNGLQEHSPMRII------LDP---HFKLSLDSKIIKTALLA------ 243
             R           GL E SP+R+       LDP    F +    +I+  A  A      
Sbjct: 68  LVRCDRRRADRIARGLPE-SPIRVTVTGCGDLDPTARFFTVGDTERIVYCASAACEKTRH 126

Query: 244 ---PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
                  V +  DP+                  DL + LT L  RGV  LLVEGGA V  
Sbjct: 127 RVGERATVVDAGDPI------------------DLARALTDLADRGVRRLLVEGGALVHG 168

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
            F+ + L D + L  +   +G+   P  + +G
Sbjct: 169 QFLTAGLADELHLVVAPFFVGDRRAPRFVGDG 200


>gi|297200713|ref|ZP_06918110.1| bifunctional enzyme deaminase/reductase [Streptomyces sviceus ATCC
           29083]
 gi|197712280|gb|EDY56314.1| bifunctional enzyme deaminase/reductase [Streptomyces sviceus ATCC
           29083]
          Length = 375

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 58/111 (52%), Gaps = 7/111 (6%)

Query: 32  ACLIVKDGIVIGRGVTAYGGCP--HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSP 86
           A ++  DG  + RG +  G  P  HAE  AL   + A      AT Y +LEPC+H    P
Sbjct: 256 AVVVAADGTELARGHSREGDDPVVHAEEAALAKIDPADPRLATATVYTSLEPCTHRASRP 315

Query: 87  -PCAQFIIECGIRRVVVCVDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGK 135
            PCA+ I++ G+RRVV    +PD  V+G  G   L+  G+ V  + E E +
Sbjct: 316 APCARLILDAGVRRVVTAWREPDTFVAGADGTGTLTAAGVDVVVLGEHEER 366



 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 11/185 (5%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL--- 207
           ++ L  AVS D  +   G   + ++G    ++V  +RA  DAILVG GT+ AD+P L   
Sbjct: 5   YVLLSAAVSLDGYLDDTGPDRLLLSGPADFDRVDEVRASVDAILVGAGTIRADNPRLLVN 64

Query: 208 -----TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
                  R+   +   P+++ +    +L  D+    T     V    +      AL    
Sbjct: 65  SETRRAARVAAGKPPYPLKVTVSGSGELDPDANFWHTGGDKLVFTTDQGAQRARALGLAA 124

Query: 263 KNINIIYCDCRDLKKLLTIL-VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
             +++      D ++LL  L   RGV  L+VEGG  +    +   L D + L  + + +G
Sbjct: 125 DVVSL--GPELDWRRLLEHLHEERGVERLMVEGGGRIHTQLLQQGLADEVQLVLAPLFVG 182

Query: 322 EGGIP 326
               P
Sbjct: 183 SPEAP 187


>gi|162454006|ref|YP_001616373.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sorangium
           cellulosum 'So ce 56']
 gi|161164588|emb|CAN95893.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sorangium
           cellulosum 'So ce 56']
          Length = 229

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 19/191 (9%)

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA--- 240
           H  RA+ DA+LVGI TV+ DDP LT R  G +   PMR++L     +   +++++     
Sbjct: 39  HRARAEHDAVLVGIRTVVIDDPRLTLR--GCEGRQPMRVVLASALGVPEGARLLQPPGSG 96

Query: 241 ------LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL---LTILVGRGVTSLL 291
                 ++               L  R   + ++  D   L  L   L  L  RGV  LL
Sbjct: 97  QPAGGRVVVFGAAGRAPRAAQAWLEERGAEVIVVPADASGLVSLPHALAELHARGVRRLL 156

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           VEGG AV  SF+ +RL D   +  +   +G+  IP+    G L +  +    D    +  
Sbjct: 157 VEGGGAVLTSFLRARLADRAEVEIAPRFLGDTAIPA---VGALGEAPLASAIDL--REPA 211

Query: 352 LEYIGKNLCLQ 362
           +E +G N+ L+
Sbjct: 212 VELLGGNVLLR 222


>gi|147918769|ref|YP_687507.1| riboflavin specific deaminase [uncultured methanogenic archaeon
           RC-I]
 gi|110622903|emb|CAJ38181.1| predicted riboflavin specific deaminase [uncultured methanogenic
           archaeon RC-I]
          Length = 225

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 11/187 (5%)

Query: 148 KRSHITLKIAVSQDNMIGMA-GCGSVPITGFISKNQ---VHLLRAQSDAILVGIGTVLAD 203
           KR ++ +   ++ D  + +  G  S  I G + ++    +H  R++ DAI+VG  T+  D
Sbjct: 2   KRPYVEVISEMTVDGKLTLKRGLSSKIIMGLMDEHSHYFLHKKRSEFDAIMVGSNTIKID 61

Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII-VTENDDPVLALAFRK 262
           +  LT RL      SP+R+I      + L + ++     AP +I V+E  D     A R 
Sbjct: 62  NSILTNRL--ATGASPIRVIPCSDGSIPLTANVLNKD--APTLICVSEKADACRVEAIRN 117

Query: 263 KNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
               ++ C  D  D+  L+  L  RG+  L+VEGG  +    I+ +++D I L +   +I
Sbjct: 118 TGAEVVICGRDRIDIDLLMDTLYNRGIRRLMVEGGPTLIWQLISRKMIDHITLIQIPYII 177

Query: 321 GEGGIPS 327
           G    PS
Sbjct: 178 GGDSTPS 184


>gi|300788900|ref|YP_003769191.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Amycolatopsis
           mediterranei U32]
 gi|299798414|gb|ADJ48789.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Amycolatopsis
           mediterranei U32]
          Length = 363

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 32  ACLIVKDGIVIGRGVTAYGGC-PHAEVQALEEAGEEAR--GATAYVTLEPCSHYGRSP-P 87
           A +   DG V+  G +  G    HAE  AL + G + R  GAT Y +LEPCSH    P  
Sbjct: 246 AVITDADGEVVATGHSGEGDPGNHAEEAALAKCGGDPRLAGATMYSSLEPCSHRSSHPRS 305

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           C Q I++ GI RVV    +P V V  RG + L Q G
Sbjct: 306 CTQLILDAGIPRVVFAWREPPVFVDARGTELLRQAG 341



 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 88/222 (39%), Gaps = 29/222 (13%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R H+ L  A S D  +       + ++       V  LRA++DAI VG GTV AD+P L 
Sbjct: 4   RPHVLLSAAQSLDGYLDDTSPERLVLSTEDDFAVVDRLRAEADAIFVGAGTVRADNPRLL 63

Query: 209 CR--------LNGLQEHSPMRII-----LDPH---FKLSLDSKIIKTALLAPVIIVTEND 252
            R        L   +   P+++      LDP    F +    KI+     AP        
Sbjct: 64  VRSPELRRKRLEQGKSEQPVKVTVTTRGLDPDAQFFTVGDTEKIV----YAP-------- 111

Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
            P  A A +     +   +  D  ++L  L  RG+ +LLVEGG  +   F+   L D + 
Sbjct: 112 -PGAADALKHVATVVDAGNPPDFGRVLDDLGARGIENLLVEGGGGIHTRFLTEGLADELR 170

Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           L  +   +G+   P  +  G   +  +    +       LEY
Sbjct: 171 LAIAPFFVGQPDAPRFVGPGLYPRPLVLTAANELQGMAVLEY 212


>gi|256786427|ref|ZP_05524858.1| bifunctional enzyme deaminase/reductase [Streptomyces lividans
           TK24]
 gi|289770318|ref|ZP_06529696.1| bifunctional enzyme deaminase/reductase [Streptomyces lividans
           TK24]
 gi|289700517|gb|EFD67946.1| bifunctional enzyme deaminase/reductase [Streptomyces lividans
           TK24]
          Length = 376

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 6/88 (6%)

Query: 32  ACLIVKDGIVIGRGVTAYGGCP--HAEVQALEEAG-EEAR--GATAYVTLEPCSHYGRSP 86
           A ++  DG  + RG +  GG P  HAE  AL +   E+ R  GAT Y +LEPC+     P
Sbjct: 256 AVVVAADGSELARGHSREGGDPVVHAEEAALAKVDPEDPRLPGATVYSSLEPCARRASRP 315

Query: 87  -PCAQFIIECGIRRVVVCVDDPDVRVSG 113
            PCA+ I++ G+RRVV    +PD  V+G
Sbjct: 316 APCARLILDAGVRRVVTAWREPDTFVAG 343



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 13/186 (6%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL--- 207
           H+ L  AVS D  +   G   + ++     ++V  +RA  DAILVG GTV AD+P L   
Sbjct: 5   HVLLSAAVSLDGYLDDTGPERLLLSSPADFDRVDGVRASVDAILVGGGTVRADNPRLLVN 64

Query: 208 -----TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR- 261
                  R+   +   P+++ +    +L   ++   T      +++T +D    A A   
Sbjct: 65  SAERRAARVADGRAEYPLKVTVSGSGELDPAARFWHTG--GDKVLLTTDDGARRARALGI 122

Query: 262 KKNINIIYCDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
             ++  +  D  D +  L  L   RGV  L+VEGG  V    +   L D + L  + + +
Sbjct: 123 GADVVSLGADL-DWRAALEYLHDRRGVRRLMVEGGGTVHTQLLQQGLADELQLVLAPLFV 181

Query: 321 GEGGIP 326
           G+   P
Sbjct: 182 GDPAAP 187


>gi|21222507|ref|NP_628286.1| bifunctional enzyme deaminase/reductase [Streptomyces coelicolor
           A3(2)]
 gi|5918510|emb|CAB56387.1| putative bifunctional enzyme deaminase/reductase [Streptomyces
           coelicolor A3(2)]
          Length = 376

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 6/88 (6%)

Query: 32  ACLIVKDGIVIGRGVTAYGGCP--HAEVQALEEAG-EEAR--GATAYVTLEPCSHYGRSP 86
           A ++  DG  + RG +  GG P  HAE  AL +   E+ R  GAT Y +LEPC+     P
Sbjct: 256 AVVVAADGSELARGHSREGGDPVVHAEEAALAKVDPEDPRLPGATVYSSLEPCARRASRP 315

Query: 87  -PCAQFIIECGIRRVVVCVDDPDVRVSG 113
            PCA+ I++ G+RRVV    +PD  V+G
Sbjct: 316 APCARLILDAGVRRVVTAWREPDTFVAG 343



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 13/186 (6%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL--- 207
           H+ L  AVS D  +   G   + ++     ++V  +RA  DAILVG GTV AD+P L   
Sbjct: 5   HVLLSAAVSLDGYLDDTGPERLLLSSPADFDRVDGVRASVDAILVGGGTVRADNPRLLVN 64

Query: 208 -----TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR- 261
                  R+   +   P+++ +    +L   ++   T      +++T +D    A A   
Sbjct: 65  SAERRAARVADGRAEYPLKVTVSGSGELDPAARFWHTG--GDKVLLTTDDGARRARALGI 122

Query: 262 KKNINIIYCDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
             ++  +  D  D +  L  L   RGV  L+VEGG  V    +   L D + L  + + +
Sbjct: 123 GADVVSLGADL-DWRAALEYLHDRRGVRRLMVEGGGTVHTQLLQQGLADELQLVLAPLFV 181

Query: 321 GEGGIP 326
           G+   P
Sbjct: 182 GDPAAP 187


>gi|289643431|ref|ZP_06475551.1| bifunctional deaminase-reductase domain protein [Frankia symbiont
           of Datisca glomerata]
 gi|289506761|gb|EFD27740.1| bifunctional deaminase-reductase domain protein [Frankia symbiont
           of Datisca glomerata]
          Length = 224

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 91/200 (45%), Gaps = 12/200 (6%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           +R ++ L +A+S D  I  AG   + ++     ++V  +RA  DAILVG  T+  D+P L
Sbjct: 3   QRPYVLLSVAMSVDGYIDDAGDRRLLLSNDADFDRVDEVRAGVDAILVGANTIRRDNPRL 62

Query: 208 TCRLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVT--ENDDPVLA 257
             R    +E         SP+++ L     L   ++   T  +  ++       D     
Sbjct: 63  LVRSAARREERVACGLPESPVKVTLTGLGDLDRGARFFTTGQVEKIVYAACPAADRARER 122

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
           LA     ++    D  DL  +L  L  RG+  L+VEGG+A+   F+ + LVD I L  + 
Sbjct: 123 LAGVASVVDA--GDPIDLNVVLADLAARGIHRLMVEGGSAIHTRFLTAGLVDEIHLVIAP 180

Query: 318 IVIGEGGIPSPLEEGYLEKN 337
             +G+   P  + +G   ++
Sbjct: 181 FFVGDPTAPRFVGDGVFPRH 200


>gi|311694828|gb|ADP97701.1| protein containing bacterial bifunctional deaminase-reductase,
           C-terminal domain [marine bacterium HP15]
          Length = 290

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 101/237 (42%), Gaps = 33/237 (13%)

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT--RQVEKRS--HITLKIAVS 159
            D   V+++G G   L Q           E K  L  +L   R V       +  ++  S
Sbjct: 31  TDKEAVKLNGHGAWHLMQPAT-------GEAKDLLSVFLPLCRPVPDNGSPKVIGQLGQS 83

Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219
            D  I      S  I G      +H +RA SDA++VG GT   D+P LT R       +P
Sbjct: 84  LDGRIATVTGRSRFINGDDGITHLHRIRAVSDAVVVGAGTATTDNPRLTVRRT--SGRNP 141

Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI------IYC--- 270
           +R+++D H ++  DS  + T   AP + +      V     + KN +I      I C   
Sbjct: 142 VRVVIDRHHRVP-DSHHLFTDGEAPTLRL------VAGTYEKAKNPSIGSGVTEIPCLGD 194

Query: 271 ----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
               D  D + +L +L   G+  + VEGG      F+N+ L+D + +  + ++IG G
Sbjct: 195 AESEDAVDPRVILEVLADLGLKKVFVEGGGVTVSCFLNAGLLDRLHVMVAPMIIGSG 251


>gi|331695256|ref|YP_004331495.1| bifunctional deaminase-reductase domain-containing protein
           [Pseudonocardia dioxanivorans CB1190]
 gi|326949945|gb|AEA23642.1| bifunctional deaminase-reductase domain protein [Pseudonocardia
           dioxanivorans CB1190]
          Length = 231

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 89/191 (46%), Gaps = 18/191 (9%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R H+ L  AVS D  I       + ++     ++V  +RA  DAILVG  T+  DDP L 
Sbjct: 4   RPHVLLSAAVSLDGCIDDVSRRRLILSNDADLDRVDEVRASVDAILVGANTIRTDDPRLL 63

Query: 209 CRLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTA-----LLAPVIIVTENDDPV 255
            R    +          SP+++ L    K+S DS+ + T      + AP   V +  + V
Sbjct: 64  VRSAARRAARVATGRAPSPVKVTLTRTGKISPDSRFLTTGDGDRVVYAPTSAVADVRERV 123

Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
            A A       +   D  D+  LL  L  RGV  L+VEGG+ V   F++S LVD + +  
Sbjct: 124 GAAA-----TVVGAGDPLDVTVLLDDLHRRGVRRLMVEGGSEVHTLFMSSGLVDELHVVF 178

Query: 316 SQIVIGEGGIP 326
           +  ++G+ G P
Sbjct: 179 APFLVGQPGAP 189


>gi|294643957|ref|ZP_06721744.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides ovatus SD CC 2a]
 gi|294807647|ref|ZP_06766440.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides xylanisolvens SD CC 1b]
 gi|292640729|gb|EFF58960.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides ovatus SD CC 2a]
 gi|294445083|gb|EFG13757.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 293

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 4/102 (3%)

Query: 29  PSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-RGATAYVTLEPCSHYGRSPP 87
           P V  +I KDGI++ +         HAE  A+E+  +    GAT   TLEPC +   + P
Sbjct: 51  PKVGAVIAKDGIILAKAFKDEESSKHAERIAIEKLDKSTLNGATLVTTLEPCINIANNQP 110

Query: 88  ---CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
              C   IIE GI+ V++ + DP+  +  +G + L +  I V
Sbjct: 111 LQSCTDLIIESGIKDVIIGILDPNGAIYCQGYEKLLENNINV 152


>gi|315585891|gb|ADU40272.1| riboflavin biosynthesis protein RibD [Helicobacter pylori 35A]
          Length = 344

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 109/269 (40%), Gaps = 46/269 (17%)

Query: 20  W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63
           W H  L   NPSVAC+++ K+  ++          PHAEV A +              E 
Sbjct: 16  WEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPGLKNDLEK 75

Query: 64  GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            E+ +  + +               +TLEPC+ YG++P C+  +     +RVV+  ++ +
Sbjct: 76  LEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIATEENE 135

Query: 109 VRVSGRG-LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA 167
            +  G   LQ     G++ + +      + L   +  Q  + +   L + ++ D   G  
Sbjct: 136 AKKGGLARLQKARIDGVVCESLENKAKDLLLPFRIMEQKGRFNLFKLALRMNGDYYHGK- 194

Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILD 225
                 ITG  S    H  RA  D ++V   T+  D+P L  R   +  Q  +P   IL 
Sbjct: 195 ------ITGQKSVVFTHNQRAVCDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPNIAILS 248

Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDP 254
            H  +  +SK+      AP  +V    DP
Sbjct: 249 KH-SIDPNSKVFS----APNRLVNAFYDP 272


>gi|329938811|ref|ZP_08288207.1| riboflavin/cytosine deaminase [Streptomyces griseoaurantiacus M045]
 gi|329302302|gb|EGG46194.1| riboflavin/cytosine deaminase [Streptomyces griseoaurantiacus M045]
          Length = 379

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 49/88 (55%), Gaps = 6/88 (6%)

Query: 32  ACLIVKDGIVIGRGVTAYGGCP--HAEVQALEE-AGEEAR--GATAYVTLEPCSHYGRSP 86
           A ++  DG  + RG +  GG P  HAE  AL + A  +AR  GAT Y +LEPC+     P
Sbjct: 257 AVVVAADGTELARGFSREGGDPAVHAEEAALAKVAPGDARLAGATVYSSLEPCARRASRP 316

Query: 87  -PCAQFIIECGIRRVVVCVDDPDVRVSG 113
            PCA+ I+  G RRVV    +PD  V G
Sbjct: 317 VPCARLILAAGARRVVTAWREPDTFVPG 344



 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 14/187 (7%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
           H+ L  AVS D  +   G   + ++G    ++V  +RA+SDAIL+G GT+  D+P L   
Sbjct: 5   HVLLSAAVSLDGFLDDTGPDRLLLSGPEDFDRVDQVRAESDAILIGAGTLRTDNPRLLVN 64

Query: 211 ---------LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
                      GL E+ P+++ +     L   ++   T   A  +  TE   P L  A  
Sbjct: 65  SPERRAKRVAAGLPEY-PLKVTVSASGDLDPAARFWHTG-GAKAVYTTEEAAPRLRAAL- 121

Query: 262 KKNINIIY--CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
             +++++    + R  + L  +   + V  L+VEGG  V    +   L D + L  + ++
Sbjct: 122 PPDVDVVAPGAELRWREVLAHLGEEKDVRRLMVEGGGRVHTELLRQGLADELQLVVAPLL 181

Query: 320 IGEGGIP 326
           +GE   P
Sbjct: 182 VGEADAP 188


>gi|292492106|ref|YP_003527545.1| bifunctional deaminase-reductase domain protein [Nitrosococcus
           halophilus Nc4]
 gi|291580701|gb|ADE15158.1| bifunctional deaminase-reductase domain protein [Nitrosococcus
           halophilus Nc4]
          Length = 364

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 114/263 (43%), Gaps = 30/263 (11%)

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSH---ITLKIAVSQDNMIGMAGCGSVPI 174
           W   +G  +   + +  +++L       +  ++H   ++  +A + D  I  A   S  I
Sbjct: 108 WCYSRGPALPCHLLTAFRLYLPCLTGHHIASQNHSPWVSGHLAQTLDGKIAAASGHSQWI 167

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPH------- 227
           +    +   H LRA  DA+LVG  T+  D+P LT R   +Q  +P R++LD H       
Sbjct: 168 SNHADRKHAHRLRALHDAVLVGRSTIEKDNPRLTVR--EVQGENPDRVVLDRHCHLLAGE 225

Query: 228 -----FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK---KNINIIYCDCRDLKKLL 279
                F    ++ ++ +  L  V       + V  L  R    KN + I     DLK +L
Sbjct: 226 KLYRIFHEPGNNWLLHSGSLDKVTERYPIPEKVTPLPIRNQEGKNDSKIM----DLKAVL 281

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLE 335
             +   G+ S+ VEGG      F+ +   D + L+ + +++G  G+P    SP++    E
Sbjct: 282 EAIWSIGIRSVFVEGGGKTLSLFLAAGRTDLLHLHIAPLLLG-SGLPSFQLSPVDR-IQE 339

Query: 336 KNFMCVRRDYFGSDVCLEYIGKN 358
             +  +   Y   ++ LE + ++
Sbjct: 340 GTYFHMTHFYLDKEILLECVPRH 362


>gi|156841575|ref|XP_001644160.1| hypothetical protein Kpol_1053p40 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114796|gb|EDO16302.1| hypothetical protein Kpol_1053p40 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 242

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 16/191 (8%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           V+ +  +TL  A S D  I         I+   +K   H LR   D ILVG GTVLADDP
Sbjct: 25  VKDKPFVTLTYAQSIDARIAAQKGERTVISHEETKTMTHYLRYHHDGILVGTGTVLADDP 84

Query: 206 ELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
            L C+      E+SP  II+D   K          + L  + +  +  +P++ +A    N
Sbjct: 85  GLNCKWGKNCFENSPKPIIIDLKQKWKFTG-----SKLHQLYLNNQGKNPIVVVANEPIN 139

Query: 265 -------INIIYCDCR-DLKKLLTIL-VGRGVTSLLVEGGAAVAHSFIN-SRLVDSIILY 314
                  + I   + + D   LL  L     + S++VEGGA V +  +  S L++S+I+ 
Sbjct: 140 KEEHVEYLTIPTTNGKFDWGLLLNALKTNFNLNSIMVEGGAVVINQLLTESHLINSLIVT 199

Query: 315 RSQIVIGEGGI 325
                +G  G+
Sbjct: 200 IGSTYLGNLGV 210


>gi|317179684|dbj|BAJ57472.1| riboflavin biosynthesis protein [Helicobacter pylori F30]
          Length = 344

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 143/341 (41%), Gaps = 80/341 (23%)

Query: 20  W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63
           W H  L   NPSVAC+++ K+  ++          PHAEV A +              E 
Sbjct: 16  WEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKVLRPSLKNDLEK 75

Query: 64  GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            E+ +  + +               +TLEPC+ YG++P C+  +     +RVV+  ++ +
Sbjct: 76  LEDPKTLSDFLKTHHNNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIATEENE 135

Query: 109 VRVSGRG-LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGM 166
            +  G   LQ    +G++ +  +E++ K  L  +  R +E++    L K+A+    M G 
Sbjct: 136 AKKGGLARLQKARIEGVVCES-LENKAKDLLLPF--RIMEQKGRFNLFKLALR---MNGD 189

Query: 167 AGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIIL 224
              G   ITG  S    H  RA  D ++V   T+  D+P L  R   +  Q+ +P   IL
Sbjct: 190 YHHGK--ITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQDKNPNIAIL 247

Query: 225 DPHFKLSLD--SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282
               K S+D  SK+      AP  +V                    +CD +DL       
Sbjct: 248 S---KRSIDPNSKVFS----APNRLVN------------------AFCDPKDLP------ 276

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           + +G     +EGG  +  S  +   +D+++L+    +I E 
Sbjct: 277 LEKGFN--FIEGGWELFESLRDK--IDALLLHSHASMISEA 313


>gi|308185276|ref|YP_003929409.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori SJM180]
 gi|308061196|gb|ADO03092.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori SJM180]
          Length = 344

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 95/215 (44%), Gaps = 38/215 (17%)

Query: 28  NPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EAGEEARGATA 72
           NPSVAC+++ K+  ++          PHAEV A +              E  E+ +  + 
Sbjct: 25  NPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPSLKNDLEKLEDPKTLSD 84

Query: 73  Y---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           +               +TLEPC+ YG++P C++ +     +RVV+  ++ + +  G    
Sbjct: 85  FLKTHHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIATEENEAKKGGLARL 144

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSVPITG 176
             ++   I+ R +E++ K  L  +  R +E++    L K+A+    M G    G   ITG
Sbjct: 145 QKARIETIICRNLENKAKDLLLPF--RVMEQKGRFNLFKLALR---MNGDYHHGK--ITG 197

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
             S    H  RA  D +++   T+  D+P L  R 
Sbjct: 198 QKSVIFTHNQRAVCDTLIISGKTIRTDNPLLDARF 232


>gi|29830662|ref|NP_825296.1| riboflavin/cytosine deaminase [Streptomyces avermitilis MA-4680]
 gi|29607774|dbj|BAC71831.1| putative diaminohydroxyphosphoribosylaminopyrimi dine deaminase
           (N-terminal)/ 5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Streptomyces avermitilis MA-4680]
          Length = 376

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 61/127 (48%), Gaps = 14/127 (11%)

Query: 32  ACLIVKDGIVIGRGVTAYGGCP--HAEVQALEE-AGEEAR--GATAYVTLEPCSHYGRSP 86
           A ++  DG  + RG +  GG P  HAE  AL +   E+ R  GAT Y +LEPC+     P
Sbjct: 256 AVIVAADGTELARGHSREGGDPVVHAEEAALAKLDAEDPRLAGATVYSSLEPCARRTSRP 315

Query: 87  -PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQ 145
            PCA+ I++ G+RRVV    +PD  V+          G++V    E    + L  Y  R 
Sbjct: 316 RPCARLILDAGVRRVVTAWREPDTFVAA-----ADGSGVLV---AEGADVVVLPEYEARA 367

Query: 146 VEKRSHI 152
                H+
Sbjct: 368 TAPNRHL 374



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 88/217 (40%), Gaps = 16/217 (7%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
           ++ L  AVS D  +   G   + ++G    ++V  +RA SDAILVG GT+  D+P L   
Sbjct: 5   YVLLSAAVSLDGFLDDTGPDRLLLSGPADFDRVDEVRAASDAILVGAGTLRTDNPRLLVN 64

Query: 211 ---------LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
                      GL E+ P+++ +     L  D++   T     V    +  + +  L   
Sbjct: 65  SAERRAARVAEGLPEY-PLKVTVTASGDLDPDAQFWHTGGEKAVYTTDKGAERLRELGI- 122

Query: 262 KKNINIIYCDCRDLKKLLTILVGR--GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
               +++        + +   +GR  GV  L+VEGG  V    +   L D + L  + + 
Sbjct: 123 --AADVVAVGAELEWRAVLDHLGRVKGVRRLMVEGGGRVHTQLLQQGLADELQLAVAPLF 180

Query: 320 IGEGGIPSPL-EEGYLEKNFMCVRRDYFGSDVCLEYI 355
           +G+   P      GY       V     G  V + Y+
Sbjct: 181 VGQAQAPRMFGSGGYPPGRMRLVETRPVGDVVLMRYV 217


>gi|237716221|ref|ZP_04546702.1| CMP/dCMP deaminase [Bacteroides sp. D1]
 gi|262407829|ref|ZP_06084377.1| CMP/dCMP deaminase [Bacteroides sp. 2_1_22]
 gi|229443868|gb|EEO49659.1| CMP/dCMP deaminase [Bacteroides sp. D1]
 gi|262354637|gb|EEZ03729.1| CMP/dCMP deaminase [Bacteroides sp. 2_1_22]
          Length = 276

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 4/102 (3%)

Query: 29  PSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-RGATAYVTLEPCSHYGRSPP 87
           P V  +I KDGI++ +         HAE  A+E+  +    GAT   TLEPC +   + P
Sbjct: 34  PKVGAVIAKDGIILAKAFKDEESSKHAERIAIEKLDKSTLNGATLVTTLEPCINIANNQP 93

Query: 88  ---CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
              C   IIE GI+ V++ + DP+  +  +G + L +  I V
Sbjct: 94  LQSCTDLIIESGIKDVIIGILDPNGAIYCQGYEKLLENNINV 135


>gi|77164589|ref|YP_343114.1| bifunctional deaminase-reductase-like [Nitrosococcus oceani ATCC
           19707]
 gi|254433288|ref|ZP_05046796.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Nitrosococcus oceani AFC27]
 gi|76882903|gb|ABA57584.1| bifunctional deaminase-reductase-like protein [Nitrosococcus oceani
           ATCC 19707]
 gi|207089621|gb|EDZ66892.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Nitrosococcus oceani AFC27]
          Length = 364

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 113/254 (44%), Gaps = 35/254 (13%)

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQV--EKR-SHITLKIAVSQDNMIGMAGCGSVPI 174
           W+  +G  +   + +  +++L       +  +KR   I+  +A + D  I  A   S  I
Sbjct: 108 WIHSRGPRLPSHLLTAFRLYLPCLAGHHIASQKRLPWISAHLAQTLDGKIAAASGHSQWI 167

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILD--------- 225
           + +  +   H LRA  DA+LVG GTV  D+P LT R   +   +P R+ILD         
Sbjct: 168 SNYADRKHAHRLRALHDAVLVGRGTVEKDNPRLTVR--EVPGENPKRVILDRQCHLLTGE 225

Query: 226 -PH--FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR----KKNINIIYCDCRDLKKL 278
            P+  F+    + ++ +  L  +       + V+ L  R    +KN  ++     DLK +
Sbjct: 226 KPYRIFQEPGHNWLLHSDSLNKIETHHAIPEKVIPLGVRNQAGEKNGKLM-----DLKAV 280

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS-------PLEE 331
           L  +   G+ S+ VEGG      F+     D + L+ + +++G  G+PS        ++E
Sbjct: 281 LETIWSLGIRSVFVEGGGKTLSFFLAGGQTDLLHLHIAPLLLG-SGLPSFQLPPVARIQE 339

Query: 332 G-YLEKNFMCVRRD 344
           G Y      C+ ++
Sbjct: 340 GTYFHMTHFCLDKE 353


>gi|261838779|gb|ACX98545.1| riboflavin-specific deaminase [Helicobacter pylori 51]
          Length = 344

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 114/269 (42%), Gaps = 46/269 (17%)

Query: 20  W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63
           W H  L   NPSVAC+++ K+  ++          PHAEV A +              E 
Sbjct: 16  WEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPGLKNDLEK 75

Query: 64  GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            E+ +  + +               +TLEPC+ YG++P C+  +     +RVV+  ++ +
Sbjct: 76  LEDPKTLSDFLKTHHDNAFKDCIFLITLEPCNSYGKTPACSGLLEILKPKRVVIATEENE 135

Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMA 167
            +  G      ++   I+   +E++ K  L  +  R +E++    L K+A+    M G  
Sbjct: 136 AKKGGLARLQKARIETIICHNLENKAKDLLLPF--RIMEQKGRFNLFKLALR---MNGDY 190

Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILD 225
             G   ITG  S    H  RA  D ++V   T+  D+P L  R   +  Q  +P   IL 
Sbjct: 191 CHGK--ITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPNIAILS 248

Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDP 254
            H  +  +SK+      AP  +V    DP
Sbjct: 249 KH-SIDPNSKVFS----APNRLVNAFYDP 272


>gi|254780015|ref|YP_003058122.1| Riboflavin biosynthesis protein RibD [Helicobacter pylori B38]
 gi|254001928|emb|CAX30181.1| Riboflavin biosynthesis protein RibD [Helicobacter pylori B38]
          Length = 344

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 112/260 (43%), Gaps = 47/260 (18%)

Query: 20  W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE------------ 65
           W H  L   NPSVAC+++ K+  ++           HAEV A + A +            
Sbjct: 16  WEHQTLALENPSVACMVLDKNHEILSLETHKKAKTSHAEVLAAKSALKILRPHLKNDLEK 75

Query: 66  -----------EARGATAY------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                      + R   A+      +TLEPC+ YG++P C++ +     +RVV+  ++ +
Sbjct: 76  LEDPKILSDFLKTRHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIATEENE 135

Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMA 167
            +  G      +    I+ R +E++ K  L  +  R +E++    L K+A+    M G  
Sbjct: 136 AKKGGLARLQKACIETIICRNLENKAKDLLLPF--RIMEQKGRFNLFKLALR---MNGDY 190

Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIIL- 224
             G   ITG  S    H  RA  D +++   T+  D+P L  R   +  Q  +P   IL 
Sbjct: 191 HHGK--ITGPKSVIFTHNQRAICDTLIISGKTIRTDNPLLDARFCDSFYQHKNPNIAILS 248

Query: 225 ----DPHFK-LSLDSKIIKT 239
               DPH K  S  ++++ T
Sbjct: 249 KRSIDPHSKVFSAPNRLVNT 268


>gi|238878329|gb|EEQ41967.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candida albicans
           WO-1]
          Length = 302

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 98/239 (41%), Gaps = 61/239 (25%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           KR  +TL  A S D+ I         ++   +K   H LR++ DAILVGIGT+LADDP+L
Sbjct: 32  KRPFVTLTYAQSLDSKIAAQPGTQTKLSHLETKTMTHYLRSKHDAILVGIGTILADDPKL 91

Query: 208 TCR--LNGLQE------HSPMRIILDPHFKLSLDSK------------------------ 235
            CR     ++       H    +++DP+ K                              
Sbjct: 92  NCRYIFESVKPNEQRILHQIRPVVIDPYGKWQYHQSQLCQICQPSTTTTTTTTKKKKNSE 151

Query: 236 -----IIKTALLAPVIIVTENDDP-------VLALAFRKKNINIIYCDCRDLK------K 277
                +   A LAP II+ E+  P       V+    +   + ++       K      +
Sbjct: 152 SSPVPVPVPAGLAPFIIIDESTIPNIESEKMVIKQGGKYIKLPLLLSTTTKTKISDNWRE 211

Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFIN-----------SRLVDSIILYRSQIVIGEGGI 325
           +L  L   G+ S+++EGGA + +  ++            +L+DS+I+  + + +G  G+
Sbjct: 212 ILQKLYQLGLKSIMIEGGAKIINDLLSINNSTDDDDDDQKLIDSVIITIAPVFLGCNGV 270


>gi|321249886|ref|XP_003191610.1| hypothetical protein CGB_A7040W [Cryptococcus gattii WM276]
 gi|317458077|gb|ADV19823.1| Hypothetical protein CGB_A7040W [Cryptococcus gattii WM276]
          Length = 198

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 24/166 (14%)

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS--PMRIILDPHFKLSLDSKIIKTA 240
            H LRA  DAIL+G+ T++ DDP L   L      S  P  +ILDP  +  L S+I+   
Sbjct: 4   THQLRAIHDAILIGVHTLVLDDPRLQTNLLPPTHASPPPQPLILDPSLRFPLTSRILNEW 63

Query: 241 LLAPVI---------------IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285
              P +               + +E  + V     R   + +          L +IL   
Sbjct: 64  NTKPAMRGQTLKQPWILCGSNVPSERINEVEQAGARVVPVPLDSDGRIPPSSLPSILTSL 123

Query: 286 GVTSLLVEGGAAVAHSFIN-------SRLVDSIILYRSQIVIGEGG 324
           G+ S+++EGG+ V  SF++       S+LVD++++  +   IGEGG
Sbjct: 124 GLRSVMIEGGSRVLSSFLHTLKRDDGSKLVDTVVVTVAPTFIGEGG 169


>gi|312194017|ref|YP_004014078.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c]
 gi|311225353|gb|ADP78208.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c]
          Length = 235

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 78/193 (40%), Gaps = 16/193 (8%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R ++ L  A S D  I  A    + ++     ++V  +RA  DAILVG GT+ ADDP+L 
Sbjct: 3   RPYVVLSCATSIDGYIDDASETRLRLSNEADFDRVDEVRAGCDAILVGAGTIRADDPKLL 62

Query: 209 CR---------LNGLQEHSPMRII------LDPHFKLSLDSKIIKTALLAPVIIVTENDD 253
            R           GL  H P+++       LDP  +         T     V+    +  
Sbjct: 63  IRSPARRRARMSRGLPSH-PLKVTLTATGDLDPSARFFTAGDPDGTDGAGQVVYTATDAA 121

Query: 254 PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
                        +   D  DL  +L  L  RGV  LLVEGG AV   F+   L D + L
Sbjct: 122 ARARARLGAVATVVEAGDPIDLPTVLADLATRGVARLLVEGGGAVHTQFLTEDLADELHL 181

Query: 314 YRSQIVIGEGGIP 326
             +   +G+   P
Sbjct: 182 VVAPFFVGDPRAP 194


>gi|219122530|ref|XP_002181596.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406872|gb|EEC46810.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 281

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 93/190 (48%), Gaps = 22/190 (11%)

Query: 171 SVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL---NGLQEHS-PMRIILDP 226
           + P++G  S    H +RA  D +L+G  T+  D+P LT RL   + L+ H+ P  I+LD 
Sbjct: 90  NFPLSGSDSLLLTHAIRASHDGVLIGGKTLSIDNPRLTNRLWDHDSLKLHAQPTSIVLDT 149

Query: 227 HFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-------DLKKLL 279
           H   ++ S      L  P+I  ++      A + ++   +++   CR       DL  +L
Sbjct: 150 HLN-NIQSLGDSMRLKHPIICCSKE----AASSCKELPSSVVLLPCRCSKNGQIDLGDML 204

Query: 280 -TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY----L 334
             + +G G+ SL++EGG  +  SF++ +LVD + +  +   +G  GI     +GY     
Sbjct: 205 HKLYIGYGIKSLMIEGGPTLLKSFLDDQLVDCLCITIAPKFLGS-GIGVSTNKGYHLPVS 263

Query: 335 EKNFMCVRRD 344
             NF  V +D
Sbjct: 264 TTNFYIVGKD 273


>gi|6822155|emb|CAB71026.1| riboflavin-specific deaminase / reductase [Helicobacter pylori]
          Length = 344

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 111/260 (42%), Gaps = 47/260 (18%)

Query: 20  W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63
           W H  L   NPSVAC+++ K   ++          PHAEV A +              E 
Sbjct: 16  WEHQTLALENPSVACMVLDKHHEILSLETHKKAKTPHAEVLAAQSALKILRPSLKNDLEK 75

Query: 64  GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            E+ +  + +               +TLEPC+ YG++P C+  +     +RVV+  ++ +
Sbjct: 76  LEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLDILKPKRVVIATEENE 135

Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMA 167
            +  G      ++   I+   +E++ K  L  +  R +E++    L K+A+    M G  
Sbjct: 136 AKKGGFARLQKARIETIICHNLENKAKDLLLPF--RVMEQKGRFNLFKLALR---MNGDY 190

Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIIL- 224
             G   ITG  S    H  RA  D ++V   T+  D+P L  R  G   Q  +P   IL 
Sbjct: 191 YHGK--ITGQKSVIFTHNQRAVCDTLIVSGKTIRTDNPLLDARFCGSFYQHKNPNIAILS 248

Query: 225 ----DPHFK-LSLDSKIIKT 239
               +PH K  S  ++++ T
Sbjct: 249 KRPINPHSKVFSAPNRLVNT 268


>gi|217076035|gb|ACJ86376.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase [Leuconostoc
           mesenteroides]
          Length = 122

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 49/101 (48%), Gaps = 2/101 (1%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR--GATAYVTLEPCSHY 82
           T  NP V  ++VKDG VI        G  HAE+ A      +    GAT YVT EP S  
Sbjct: 22  TFENPRVGAVLVKDGQVITTPYHEKFGEAHAEINAFNRVKNKTEFLGATLYVTFEPNSPQ 81

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G+    A  I   G +RVVV   DP+   +G+G++ L   G
Sbjct: 82  GKVGSWAVQIQNWGQKRVVVGKIDPNPSTNGKGIKMLRSVG 122


>gi|6572110|emb|CAB63093.1| riboflavin-specific deaminase [Bartonella quintana]
          Length = 87

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
           +L +L  RG+ S+L+EGG      F+N+  VD +I + + +++G+  I +P    YL + 
Sbjct: 2   ILRLLYQRGINSVLLEGGVKTGEKFLNAGCVDHLICFYAPVILGKDRIEAPHFGNYLSQ- 60

Query: 338 FMCVRRDYFGSDVCLEYIGKNLCLQEL 364
           F  V    FG+D C ++  K LC QEL
Sbjct: 61  FYEVETRMFGNDRCYKWRRKTLCSQEL 87


>gi|304315578|ref|YP_003850723.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777080|gb|ADL67639.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 143

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 15/123 (12%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           V  ++VKDGI+IG+G     T      HAE+ A+++A +         A+ YVTLEPC  
Sbjct: 19  VGAVVVKDGIIIGKGHNLKETEKDATQHAEINAIKDACKNIGDWRLNDASLYVTLEPC-- 76

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
               P CA  IIE  I+RV +  +  D   +G    +L++K  +   +ME + K  +  +
Sbjct: 77  ----PMCAGAIIESRIKRVYIGAESHDSGAAGTVYDFLNKKVDVYFGIMEDDCKKLISDF 132

Query: 142 LTR 144
            +R
Sbjct: 133 FSR 135


>gi|328545540|ref|YP_004305649.1| Bifunctional deaminase-reductase domain protein [polymorphum gilvum
           SL003B-26A1]
 gi|326415281|gb|ADZ72344.1| Bifunctional deaminase-reductase domain protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 262

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 12/174 (6%)

Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214
           ++  S D  I      S  I G    + +H LRA  DA+++G GT +ADDP+LT RL  +
Sbjct: 59  QLGQSLDGRIATVNGQSKYINGPGCLSHLHRLRAVCDAVVIGAGTAIADDPQLTVRL--V 116

Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII-YCDCR 273
               P R+++DP  +L    K ++       ++  E     +      +++ II     R
Sbjct: 117 DGPHPARVLIDPRGRLPATLKALRDDGTRRFVVTLEGTRLNV-----PESVEIIRLAGDR 171

Query: 274 D----LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           D     + ++  L   G   LLVEGG+     F++S  +D + L  + ++IG G
Sbjct: 172 DGHLAPRAIVEALASHGFRRLLVEGGSWTISRFLSSGCLDRLHLLIAPMIIGAG 225


>gi|68489028|ref|XP_711627.1| hypothetical protein CaO19.13697 [Candida albicans SC5314]
 gi|68489169|ref|XP_711559.1| hypothetical protein CaO19.6341 [Candida albicans SC5314]
 gi|46432872|gb|EAK92335.1| hypothetical protein CaO19.6341 [Candida albicans SC5314]
 gi|46432945|gb|EAK92405.1| hypothetical protein CaO19.13697 [Candida albicans SC5314]
          Length = 304

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 38/63 (60%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           KR  +TL  A S D+ I         ++   +K   H LR++ DAILVGIGT+LADDP+L
Sbjct: 32  KRPFVTLTYAQSLDSKIAAQPGTQTKLSHLETKTMTHYLRSKHDAILVGIGTILADDPKL 91

Query: 208 TCR 210
            CR
Sbjct: 92  NCR 94


>gi|108563832|ref|YP_628148.1| riboflavin biosynthesis protein [Helicobacter pylori HPAG1]
 gi|107837605|gb|ABF85474.1| riboflavin biosynthesis protein [Helicobacter pylori HPAG1]
          Length = 344

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 38/215 (17%)

Query: 28  NPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE--------------------- 65
           NPSVAC+++ K+  ++          PHAEV A + A +                     
Sbjct: 25  NPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRPSLKNDLEKLEDPKTLSD 84

Query: 66  --EARGATAY------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
             + R   A+      +TLEPC+ YG++P C++ +     +RVV+  ++ + +  G    
Sbjct: 85  FLKTRHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIAAEENEAKKGGLARL 144

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSVPITG 176
             +    ++ R +E++ K  L  +  R +E++    L K+A+    M G    G   ITG
Sbjct: 145 QKAHIETMICRNLENKAKDLLLPF--RIMEQKGRFNLFKLALR---MNGDYYHGK--ITG 197

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
             S    H  RA  D ++V   T+  D+P L  R 
Sbjct: 198 PKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDTRF 232


>gi|308064267|gb|ADO06154.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori Sat464]
          Length = 344

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 103/250 (41%), Gaps = 46/250 (18%)

Query: 20  W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63
           W H  L   NPSVAC+++ K+  ++          PHAEV A +              E 
Sbjct: 16  WEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRPGLKNDLEK 75

Query: 64  GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            E+ +  + +               +TLEPC+ YG++P C+  +     +RVV+  ++ +
Sbjct: 76  LEDPKTLSDFLKTHHNNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIATEENE 135

Query: 109 VRVSGRG-LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA 167
            +  G   L+    +G++ + +      + L   +  Q  + +   L + ++ D   G  
Sbjct: 136 AKKGGLARLKKARIEGVVCESLKNKAKDLLLPFRIMEQKGRFNLFKLALRMNGDYHHGK- 194

Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIIL- 224
                 ITG  S    H  RA  D ++V   T+  D+P L  R   +  Q  +P   IL 
Sbjct: 195 ------ITGQKSVVFTHNQRAICDTLIVSGKTIRTDNPLLDTRFCDSFYQNKNPNIAILS 248

Query: 225 ----DPHFKL 230
               DPH K+
Sbjct: 249 KHSIDPHSKV 258


>gi|257483266|ref|ZP_05637307.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 160

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 32/168 (19%)

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFK 229
           ++ V  LRAQS  +L G  TVLAD   LT R + L              P+R+++D   +
Sbjct: 1   RSAVQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLR 60

Query: 230 LSLDSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKL 278
           + LD+   +       ++VT           E    +LALA    ++        DL+KL
Sbjct: 61  VPLDAPFFQAG---SALVVTCAAASARGRYQEEGHEMLALADSAGHV--------DLRKL 109

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           +  L  RGV  +LVE G  +A +F    LVD   ++ +   +G    P
Sbjct: 110 MVELATRGVNEVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARP 157


>gi|288920814|ref|ZP_06415112.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Frankia sp.
           EUN1f]
 gi|288347773|gb|EFC82052.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Frankia sp.
           EUN1f]
          Length = 242

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 80/196 (40%), Gaps = 14/196 (7%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           V  R H+ L  A+S D  I       + ++     ++V  +RA  DAILVG GTV  DDP
Sbjct: 11  VPVRPHVVLSCAMSLDGRIDDCSPSRLILSSPADLDRVDEVRAGCDAILVGAGTVRRDDP 70

Query: 206 ELTCRLNGLQEH--------SPMRIIL------DPHFKLSLDSKIIKTALLAPVIIVTEN 251
            L  R    ++         +P+R +L      DP  ++  D                  
Sbjct: 71  GLAVRSQRRRDARTAAGRTPTPLRAVLTREGDLDPAARIFRDGADRVVYRATAGASGEAA 130

Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311
                A +       ++      L  LL  L GRGV  LLVEGG  +  +F+ + LVD +
Sbjct: 131 ASGGAAASPLAAVATVVDLPEPPLASLLRDLTGRGVRRLLVEGGTTIHTAFLTAGLVDEL 190

Query: 312 ILYRSQIVIGEGGIPS 327
            L  +   +GE   P+
Sbjct: 191 HLVVAPFFVGEAAAPT 206


>gi|261840180|gb|ACX99945.1| riboflavin biosynthesis protein RibD [Helicobacter pylori 52]
          Length = 344

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 116/270 (42%), Gaps = 48/270 (17%)

Query: 20  W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63
           W H  L   NPSVAC+++ K+  ++          PHAEV A +              E 
Sbjct: 16  WEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPSLKNDLEK 75

Query: 64  GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            E+ +  + +               +TLEPC+ YG++P C+  +     +RVV+  ++ +
Sbjct: 76  LEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIATEENE 135

Query: 109 VRVSGRG-LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGM 166
            +  G   LQ     G++ +  +E++ K  L  +  R +E++    L K+A+    M G 
Sbjct: 136 AKKGGLARLQKARIDGVVCES-LENKAKDLLLPF--RIMEQKGRFNLFKLALR---MNGD 189

Query: 167 AGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIIL 224
              G   ITG  S    H  RA  D ++V   T+  D+P L  R   +  Q  +P   IL
Sbjct: 190 YCHGK--ITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPNIAIL 247

Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
             H  +  +SK+      AP  +V    DP
Sbjct: 248 SKH-PIDPNSKVFS----APNRLVNAFYDP 272


>gi|317182710|dbj|BAJ60494.1| riboflavin biosynthesis protein [Helicobacter pylori F57]
          Length = 344

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 116/270 (42%), Gaps = 48/270 (17%)

Query: 20  W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63
           W H  L   NPSVAC+++ K   ++          PHAEV A +              E 
Sbjct: 16  WEHQTLALENPSVACMVLDKHHEILSLETHKKAKTPHAEVLAAKSALKILRPSLKNDLEK 75

Query: 64  GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            E+ +  + +               +TLEPC+ YG++P C+  +     +RVV+  ++ +
Sbjct: 76  LEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIATEENE 135

Query: 109 VRVSGRG-LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGM 166
            +  G   LQ    +GI+ +  +E++ K  L  +  R +E++    L K+A+    M G 
Sbjct: 136 AKKGGLARLQKARIEGIVCES-LENKAKDLLLPF--RIMEQKGRFNLFKLALR---MNGD 189

Query: 167 AGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIIL 224
              G   ITG  S    H  RA  D ++V   T+  D+P L  R   +  Q  +P   IL
Sbjct: 190 YCHGK--ITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPNIAIL 247

Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
             H  +  +SK+      AP  +V    DP
Sbjct: 248 SKH-PIDPNSKVFS----APNRLVNAFYDP 272


>gi|218514635|ref|ZP_03511475.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
           [Rhizobium etli 8C-3]
          Length = 237

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 39/59 (66%)

Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           + I+YC+    + LL  L  RG++SLLVEGGA  A  F+ + LVD I LY++ +VIGE 
Sbjct: 139 VEIVYCNPYHPEVLLPALATRGISSLLVEGGAKTARLFLEAGLVDRIELYQAPVVIGEA 197


>gi|213401993|ref|XP_002171769.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Schizosaccharomyces japonicus yFS275]
 gi|211999816|gb|EEB05476.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Schizosaccharomyces japonicus yFS275]
          Length = 244

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 94/221 (42%), Gaps = 42/221 (19%)

Query: 165 GMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ------EHS 218
           G    G + ++G  S    H LRA +D I+VG  TV  D+P LT RL          +  
Sbjct: 30  GKPNPGQLVLSGHESFVMTHKLRAHADGIMVGSTTVRVDNPSLTARLPDPAHDTLPLDQQ 89

Query: 219 PMRIILDPHFKLSLDS-KIIKTALL----APVIIVTE------NDDPVL----------- 256
           P  I++D    L  +S K+IK A L    AP +IV+         DP++           
Sbjct: 90  PRPILVDSSLSLDYESLKVIKLARLGVGKAPYVIVSPKTESAAKSDPIIEQKVNVITRVG 149

Query: 257 -ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD-SIILY 314
             L  R  +  + + +   L +L  +    G+  L+VEGGA +    + S  VD +I+  
Sbjct: 150 GKLIVRATDNTVRFHEYVALDQLREL----GIRRLMVEGGARLLSHALKSECVDAAIVTI 205

Query: 315 RSQIV--IGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
             Q V  +   GI +P        N+ C   + FG DV  E
Sbjct: 206 SPQFVDPLSTIGIDAP------SLNWPCKSWEMFGDDVVFE 240


>gi|188528275|ref|YP_001910962.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori Shi470]
 gi|188144515|gb|ACD48932.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori Shi470]
          Length = 344

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 110/269 (40%), Gaps = 46/269 (17%)

Query: 20  W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63
           W H  L   NPSVAC+++ K+  ++          PHAEV A +              E 
Sbjct: 16  WEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRPGLKNDLEK 75

Query: 64  GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            E+ +  + +               +TLEPC+ YG++P C+  +     +RVV+  ++ +
Sbjct: 76  LEDPKTLSDFLKTHHNNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIATEENE 135

Query: 109 VRVSGRG-LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA 167
            +  G   L+    +G++ + +      + L   +  Q  + +   L + ++ D   G  
Sbjct: 136 AKKGGLARLKKARIEGVVCESLKNKAKDLLLPFRIMEQKGRFNLFKLALRMNGDYCHGK- 194

Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILD 225
                 ITG  S    H  RA  D ++V   T+  D+P L  R   +  Q  +P   IL 
Sbjct: 195 ------ITGQKSVVFTHNQRAICDTLIVSGKTIRTDNPLLDTRFCDSFYQNKNPNIAILS 248

Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDP 254
            H  +  +SK+      AP  +V    DP
Sbjct: 249 KH-SIDPNSKVFS----APNRLVNAFYDP 272


>gi|159042516|ref|YP_001541768.1| deaminase-reductase domain-containing protein [Caldivirga
           maquilingensis IC-167]
 gi|157921351|gb|ABW02778.1| bifunctional deaminase-reductase domain protein [Caldivirga
           maquilingensis IC-167]
          Length = 211

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 8/139 (5%)

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R + DA +VG  TV+  D   T +         +R+++D  F++ L+SK   +   AP +
Sbjct: 41  RDEVDATIVGAQTVIDVDGTYTPKTG----KQILRVLIDGAFRVPLESKFFNSP--APAL 94

Query: 247 IVTENDDPVLALAF-RKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           +      P   +   RK  I ++  D + D++ LL+ L  RG+  +LVEGG AV   F +
Sbjct: 95  VAVTERAPRAKIELARKAGIEVMEFDKQVDVEVLLSKLTERGIKKVLVEGGGAVFWQFFS 154

Query: 305 SRLVDSIILYRSQIVIGEG 323
             L+D + L  +  ++G+G
Sbjct: 155 RNLIDEVRLTIAPFMMGKG 173


>gi|217034301|ref|ZP_03439718.1| hypothetical protein HP9810_885g32 [Helicobacter pylori 98-10]
 gi|216943273|gb|EEC22738.1| hypothetical protein HP9810_885g32 [Helicobacter pylori 98-10]
          Length = 344

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 139/340 (40%), Gaps = 78/340 (22%)

Query: 20  W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63
           W H  L   NPSVAC+++ K+  ++          PHAEV A +              E 
Sbjct: 16  WEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPGLKNDLEK 75

Query: 64  GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            E+ +  + +               +TLEPC+ YG++P C+  +     +RVV+  ++ +
Sbjct: 76  LEDPKTLSDFLKTHHDNAFKDCIFLITLEPCNSYGKTPACSGLLEILKPKRVVIATEENE 135

Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMA 167
            +  G      ++   I+   +E++ K  L  +  R +E++    L K+A+    M G  
Sbjct: 136 AKKGGLARLQKARIETIICHNLENKAKDLLLPF--RIMEQKGRFNLFKLALR---MNGDY 190

Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILD 225
             G   ITG  S    H  RA  D ++V   T+  D+P L  R   +  Q  +P   IL 
Sbjct: 191 CHGK--ITGQKSVIFTHNQRAVCDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPNIAILS 248

Query: 226 PHFKLSLD--SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV 283
              K S+D  SK+      AP  +V                    +CD +DL       +
Sbjct: 249 ---KRSIDPNSKVFS----APNRLVN------------------AFCDPKDLP------L 277

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            +G     +EGG  +  S  +   +D+++L+    +I E 
Sbjct: 278 EKGFN--FIEGGWELFESLRDK--IDALLLHSHASMISEA 313


>gi|161529120|ref|YP_001582946.1| deaminase-reductase domain-containing protein [Nitrosopumilus
           maritimus SCM1]
 gi|160340421|gb|ABX13508.1| bifunctional deaminase-reductase domain protein [Nitrosopumilus
           maritimus SCM1]
          Length = 218

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 90/185 (48%), Gaps = 20/185 (10%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
           + R H+ L  A+S D  I      S  ++      ++H LR+  DAIL+G  T   D+P 
Sbjct: 3   KSRPHVILSGAISVDGKIATKTNDS-KLSSQKDIQRLHKLRSSVDAILIGKNTASRDNPL 61

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN-- 264
           LT R   ++  +P+RI+LD    +S  SKI++++   P II        ++    KKN  
Sbjct: 62  LTVR--HVKGKNPIRIVLDSKGTISKTSKILQSSNKVPTIIA-------ISKKITKKNLE 112

Query: 265 ------INIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
                 + II    D  +LK LL  L  + + ++LVEGG  V   F+   L D +IL  S
Sbjct: 113 KLEKFPVEIISTGNDSVNLKLLLKKLSKKKIKTILVEGGGTVNWEFVKHNLFDEMILTIS 172

Query: 317 QIVIG 321
             ++G
Sbjct: 173 PYLLG 177


>gi|308062769|gb|ADO04657.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori Cuz20]
          Length = 344

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 110/269 (40%), Gaps = 46/269 (17%)

Query: 20  W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63
           W H  L   NPSVAC+++ K+  ++          PHAEV A +              E 
Sbjct: 16  WEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRPGLKNDLEK 75

Query: 64  GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            E+ +  + +               +TLEPC+ YG++P C+  +     +RVV+  ++ +
Sbjct: 76  LEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIATEENE 135

Query: 109 VRVSGRG-LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA 167
            +  G   L+    +G++ + +      + L   +  Q  + +   L + ++ D   G  
Sbjct: 136 AKKGGLARLKKARIEGVVCESLENKAKDLLLPFRIMEQKGRFNLFKLALRMNGDYCHGR- 194

Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILD 225
                 ITG  S    H  RA  D ++V   T+  D+P L  R   +  Q  +P   IL 
Sbjct: 195 ------ITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPNIAILS 248

Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDP 254
            H  +  +SK+      AP  +V    DP
Sbjct: 249 KH-SIDPNSKVFS----APNRLVNAFYDP 272


>gi|304406859|ref|ZP_07388514.1| bifunctional deaminase-reductase domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304344392|gb|EFM10231.1| bifunctional deaminase-reductase domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 219

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 9/144 (6%)

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           +H  R     I+VG  T+  D+P LT R    +  +P+RI+      + LDS I+     
Sbjct: 38  IHQFRGHVQGIMVGKNTIHNDNPFLTNRYE--ENKNPIRIVPTATMDIDLDSNILSDD-- 93

Query: 243 APVIIVT----ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAA 297
              IIVT    ++DD +  +  R K+  +   D  D  +L   L    G+T L+VEGG  
Sbjct: 94  GRTIIVTTELGKDDDKIEQIRARGKDCIVCGHDKVDFAELFRRLESEFGITDLMVEGGGF 153

Query: 298 VAHSFINSRLVDSIILYRSQIVIG 321
           +     +  L D IIL +  I+IG
Sbjct: 154 LNWHVFDQDLADEIILMQLPIIIG 177


>gi|111221324|ref|YP_712118.1| putative riboflavin/cytosine deaminase [Frankia alni ACN14a]
 gi|111148856|emb|CAJ60534.1| Putative riboflavin/cytosine deaminase (partial) [Frankia alni
           ACN14a]
          Length = 245

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 91/214 (42%), Gaps = 39/214 (18%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R ++    A+S D  I       + ++G     +V  +RA  DAILVG  TV  DDP L 
Sbjct: 19  RPYVICSCAMSLDGRIDDCSQARLILSGPADLERVDEVRAGCDAILVGAETVRRDDPRLA 78

Query: 209 CRLN---------GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
            R           GL   +P++++L     L   S++  T             DPV  L 
Sbjct: 79  VRAEHRRAARVAAGLPP-TPVKVVLSGGGDLDPRSRVFGT-------------DPVDTLV 124

Query: 260 FRK-------------KNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           +R+               ++++    R   D+  +L  L  RGV  LLVEGG +V  +F+
Sbjct: 125 YRRAGSAAPPPSWSAAPRVSVVDLPGRPWVDVAAVLADLDRRGVRRLLVEGGTSVHTAFL 184

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
            + LVD + L  +   +GE   P+ +  G   ++
Sbjct: 185 TAGLVDELHLAVAPFFVGERDAPAFVGPGAFPQD 218


>gi|82791814|gb|ABB90836.1| putative bifunctional enzyme deaminase/reductase [Streptomyces
           davawensis]
          Length = 375

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 10/184 (5%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL--- 207
           ++ L  AVS D  +   G   + ++     ++V  +RA  DAILVG GT+ AD+P L   
Sbjct: 5   YVLLSAAVSLDGYLDDTGPERLLLSSPADFDRVDEVRASVDAILVGAGTIRADNPRLLVN 64

Query: 208 -----TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
                  R+       P+++ +     L   +K   T     V+  T+        A   
Sbjct: 65  SPERRAARVAAGHPEYPLKVTVSGSGDLDPAAKFWHTG-GEKVVYTTDKGARTARAAGLA 123

Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
            ++  +  D  D ++LLT L  RGV  L+VEGG  +    +   L D + L  + + +G+
Sbjct: 124 ADVVALGADL-DWRRLLTDLHARGVHRLMVEGGGTIHTQLLQEGLADELQLVLAPLFVGD 182

Query: 323 GGIP 326
              P
Sbjct: 183 PSAP 186



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 58/109 (53%), Gaps = 11/109 (10%)

Query: 32  ACLIVKDGIVIGRGVTAYGGCP--HAEVQALEEAG-EEAR--GATAYVTLEPCSHYGRSP 86
           A ++  DG  + RG +  G  P  HAE  AL +   E+ R   AT Y +LEPC+H    P
Sbjct: 255 AVVVAADGTELARGHSREGTDPVVHAEEAALAKIDPEDPRLPSATVYSSLEPCAHRSSRP 314

Query: 87  -PCAQFIIECGIRRVVVCVDDPD---VRVSGRGLQWLSQKGIIVDRMME 131
            PCA+ I++ G+RRVV    +PD   V   G GL  L+  G+ V  + E
Sbjct: 315 APCARLILDAGVRRVVTAWREPDTFVVAADGTGL--LTAAGVDVLELPE 361


>gi|154150451|ref|YP_001404069.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus
           Methanoregula boonei 6A8]
 gi|153999003|gb|ABS55426.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanoregula
           boonei 6A8]
          Length = 226

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 88/187 (47%), Gaps = 12/187 (6%)

Query: 149 RSHITLKIAVSQDNMIGMA-GCGSVPITGFISKNQ---VHLLRAQSDAILVGIGTVLADD 204
           R H+ +   ++ D  + +  G  S  +  +++      +H  RA  DAI+VG  T+  D+
Sbjct: 7   RPHVLMMSEITADGKLTLKKGASSKILMKYMAHETEILLHETRAAYDAIMVGANTIRIDN 66

Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL-AFRKK 263
             LT RL  +   SP+R+I      + LD+ ++     AP +I      P   + A R K
Sbjct: 67  SFLTVRL--VPGKSPLRVIPCSMADIPLDANVLGPD--APTLIAVSEKAPKDRVEAIRAK 122

Query: 264 NINIIYC--DCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
            +N+     D  +L  L+ IL  + GV  L++EGG  +    ++ +LVD I L     ++
Sbjct: 123 GVNVAVAGKDHVELSLLMQILHDKYGVKKLMIEGGPTLNWHMLHDKLVDEIRLIHLPFIV 182

Query: 321 GEGGIPS 327
           G    PS
Sbjct: 183 GGSDTPS 189


>gi|307352940|ref|YP_003893991.1| bifunctional deaminase-reductase domain-containing protein
           [Methanoplanus petrolearius DSM 11571]
 gi|307156173|gb|ADN35553.1| bifunctional deaminase-reductase domain protein [Methanoplanus
           petrolearius DSM 11571]
          Length = 227

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 89/182 (48%), Gaps = 15/182 (8%)

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           +H  RA+ DAI+VG  T+  D+  LT R   ++  SP+R+I      +  +S ++     
Sbjct: 45  LHKTRAEYDAIMVGSNTINIDNSFLTVR--SVKGKSPLRVIPSSRAAIPPESNVLGPD-- 100

Query: 243 APVII-VTENDDPVLALAFRKKNINIIYC---DCRDLKKLLTILV-GRGVTSLLVEGGAA 297
           AP +I V++   P        K  +++ C   D  DL  L+  LV   GV+ L++EGG  
Sbjct: 101 APTLIAVSKKASPENIRILEDKGADVV-CVGEDKVDLPLLMKTLVENYGVSKLMIEGGPT 159

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN---FMCVRRDYF--GSDVCL 352
           + +  +  RLVD I L     ++G    PS +   ++E     F    ++Y+  G+++  
Sbjct: 160 LNYYMLQDRLVDEIRLIHLPFIVGGSDTPSLVGGMHIESEEEMFSLQLKNYYMCGTNLVT 219

Query: 353 EY 354
           EY
Sbjct: 220 EY 221


>gi|88813576|ref|ZP_01128809.1| riboflavin biosynthesis protein RibD [Nitrococcus mobilis Nb-231]
 gi|88789205|gb|EAR20339.1| riboflavin biosynthesis protein RibD [Nitrococcus mobilis Nb-231]
          Length = 88

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 45/81 (55%)

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M  + +     +  R +    ++  K+A+S D    MA   S  IT   ++  VH L+A+
Sbjct: 1   MAEQAQTLNPGFFKRMLTGLPYLRCKLAMSLDGRTAMASGESRWITAAAARGDVHHLQAR 60

Query: 190 SDAILVGIGTVLADDPELTCR 210
           SDA+L G GTVLADDP+LT R
Sbjct: 61  SDALLTGHGTVLADDPQLTAR 81


>gi|317010121|gb|ADU80701.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori India7]
          Length = 344

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 111/260 (42%), Gaps = 47/260 (18%)

Query: 20  W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63
           W H  L   NPSVAC+++ K   ++          PHAEV A +              E 
Sbjct: 16  WEHQTLALENPSVACMVLDKHHEILSLETHKKAKTPHAEVLAAQSALKILRPSLKNDLEK 75

Query: 64  GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            E+ +  + +               +TLEPC+ YG++P C++ +     +RVV+  ++ +
Sbjct: 76  LEDPKTLSDFLKTHHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIATEENE 135

Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMA 167
            +  G      +    I+   +E++ K  L  +  R +E++    L K+A+    M G  
Sbjct: 136 AKKGGLARLQKACIETIICHNLENKAKDLLLPF--RVMEQKGRFNLFKLALR---MNGDY 190

Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIIL- 224
             G   ITG  S    H  RA  D ++V   T+  D+P L  R      Q  +P   IL 
Sbjct: 191 YHGK--ITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDRFYQHKNPNIAILS 248

Query: 225 ----DPHFK-LSLDSKIIKT 239
               +PH K  S+ ++++ T
Sbjct: 249 KRPINPHSKVFSVPNRLVNT 268


>gi|134107195|ref|XP_777728.1| hypothetical protein CNBA6060 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50260424|gb|EAL23081.1| hypothetical protein CNBA6060 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 198

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 24/165 (14%)

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS--PMRIILDPHFKLSLDSKIIKT-- 239
           H LRA  DAILVG+ T++ DDP L   L      S  P  +ILDP  +  L S+I+    
Sbjct: 5   HHLRAIHDAILVGVHTLVLDDPRLQTNLLPPSHASPPPQPLILDPSLRFPLTSRILNEWN 64

Query: 240 --------ALLAPVIIVTEN--DDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRG 286
                    L  P I+   +   D +  +      +  +  D         L +IL   G
Sbjct: 65  TKPALRGRTLKQPWILCGPDVSSDRIHEVEQAGARVVPVPLDPNGRIPPSSLPSILTSLG 124

Query: 287 VTSLLVEGGAAVAHSFIN-------SRLVDSIILYRSQIVIGEGG 324
           + S++VEGG+ V  SF++       S+LVDS+++  +   IG+GG
Sbjct: 125 LRSVMVEGGSRVLSSFLHTLKRDDGSKLVDSVVVTVAPTFIGQGG 169


>gi|225569894|ref|ZP_03778919.1| hypothetical protein CLOHYLEM_05989 [Clostridium hylemonae DSM
           15053]
 gi|225161364|gb|EEG73983.1| hypothetical protein CLOHYLEM_05989 [Clostridium hylemonae DSM
           15053]
          Length = 159

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 17/131 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
           ++S D +FM  A++ +     L  T   + C+IV +G +IGRG     T      HAE+ 
Sbjct: 1   MNSVDEKFMKEAIKQAGKAYALNET--PIGCVIVYEGRIIGRGYNRRNTDKNTLAHAEIT 58

Query: 59  ALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+ +A  +       G T YVTLEPC      P CA  I++  + RVVV   +P    +G
Sbjct: 59  AIRKASRKMGDWRLEGCTLYVTLEPC------PMCAGAIVQSRMDRVVVGCMNPKAGCAG 112

Query: 114 RGLQWLSQKGI 124
             L  L  +G 
Sbjct: 113 SVLNVLQTEGF 123


>gi|261417404|ref|YP_003251087.1| CMP/dCMP deaminase zinc-binding protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373860|gb|ACX76605.1| CMP/dCMP deaminase zinc-binding protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 210

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 62/143 (43%), Gaps = 19/143 (13%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
           SS D +FM  ALR  +  +        + C+IVKDG+VIG+G            HAE+ A
Sbjct: 49  SSEDEKFMRMALR--QAQIAFDMKEIPIGCVIVKDGVVIGKGYNQVEQLKDATAHAEIIA 106

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           +  A          G T YVTLEPC      P CA  I+   + R+V     PD R  G 
Sbjct: 107 IGTAASTLDNWRLDGCTLYVTLEPC------PMCAGAILNSRVSRIV--YGSPDSRFGGC 158

Query: 115 GLQWLSQKGIIVDRMMESEGKIF 137
           G       G  + R +E  G I 
Sbjct: 159 GTTIDVITGNALKRAVEVTGGIL 181


>gi|212536738|ref|XP_002148525.1| riboflavin biosynthesis protein Rib7, putative [Penicillium
           marneffei ATCC 18224]
 gi|210070924|gb|EEA25014.1| riboflavin biosynthesis protein Rib7, putative [Penicillium
           marneffei ATCC 18224]
          Length = 351

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 134 GKIFLHAYL---------TRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            + FL +YL         T+Q E  R   TL  A S D+ + +A      ++G  SK   
Sbjct: 15  SRPFLDSYLPPLPDDKDTTKQDELSRPFTTLTFATSLDSSLSLAPGVRTTLSGPQSKAMT 74

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNG 213
           H LR + +AIL+G+GT +ADDP L CR+ G
Sbjct: 75  HYLRFRHEAILIGVGTAIADDPGLNCRIEG 104


>gi|332674278|gb|AEE71095.1| riboflavin biosynthesis protein RibD [Helicobacter pylori 83]
          Length = 344

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 138/338 (40%), Gaps = 74/338 (21%)

Query: 20  W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63
           W H  L   NPSVAC+++ K+  ++          PHAEV A +              E 
Sbjct: 16  WEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPSLKNDLEK 75

Query: 64  GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            E+ +  + +               +TLEPC+ YG++P C+  +     +RVV+  ++ +
Sbjct: 76  LEDPKTLSDFLKTHHNNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIATEENE 135

Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMA 167
            +  G      ++   +V   +E++ K  L  +  R +E++    L K+A+    M G  
Sbjct: 136 AKKGGLARLKKARIDGVVCEGLENKAKDLLLPF--RIMEQKGRFNLFKLALR---MNGDY 190

Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILD 225
             G   ITG  S    H  RA  D ++V   T+  D+P L  R   +  Q  +P   IL 
Sbjct: 191 YHGK--ITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPNIAILS 248

Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285
            H  +  +SK+      AP  +V    DP                  +DL       + +
Sbjct: 249 KH-SIDPNSKVFS----APNRLVNAFYDP------------------KDLP------LEK 279

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           G     +EGG  +  S  +   +D+++L+    +IGE 
Sbjct: 280 GFN--FIEGGWELFESLRDK--IDTLLLHSHASMIGEA 313


>gi|239930347|ref|ZP_04687300.1| riboflavin/cytosine deaminase [Streptomyces ghanaensis ATCC 14672]
 gi|291438692|ref|ZP_06578082.1| bifunctional enzyme deaminase/reductase [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341587|gb|EFE68543.1| bifunctional enzyme deaminase/reductase [Streptomyces ghanaensis
           ATCC 14672]
          Length = 377

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 54/102 (52%), Gaps = 11/102 (10%)

Query: 32  ACLIVKDGIVIGRGVTAYGGCP--HAEVQALEEAGE-EARGATA--YVTLEPCSHYGRSP 86
           A ++  DG  + RG +  GG P  HAE  AL +    + R ATA  Y +LEPC+     P
Sbjct: 256 AVVVAADGTELARGHSREGGDPVVHAEEAALAKTDPTDPRLATATVYSSLEPCARRASRP 315

Query: 87  -PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            PCA+ I++ GIRRVV    +PD  V G         G++VD
Sbjct: 316 APCARLILDAGIRRVVTAWREPDTFVPG-----ADGSGVLVD 352



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 11/185 (5%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC- 209
           ++ L  AVS D  +   G   + ++G    ++V  +RA  DAILVG GT+ AD+P L   
Sbjct: 5   YVLLSAAVSLDGYLDDTGPERLLLSGPADFDRVDEVRASVDAILVGAGTIRADNPRLLVN 64

Query: 210 -------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
                  R+   +   P+++ +     L   ++   T      ++ T +     A A   
Sbjct: 65  SPERRADRVARGRPEYPLKVTVSGSGDLDPAARFWHTG--GEKVLYTTDRGAERARAHGL 122

Query: 263 KNINIIYCDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
               +      D ++LL  L   RGV  L+VEGG  V    +   L D + L  + +++G
Sbjct: 123 AADVVPLGPELDWRRLLEHLHAVRGVRRLMVEGGGLVHTQLLTQGLADELQLVLAPLLVG 182

Query: 322 EGGIP 326
           +   P
Sbjct: 183 DPDAP 187


>gi|308183608|ref|YP_003927735.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori PeCan4]
 gi|308065793|gb|ADO07685.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori PeCan4]
          Length = 344

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 110/269 (40%), Gaps = 46/269 (17%)

Query: 20  W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA-------------- 63
           W H  L   NPSVAC+++ K+  ++          PHAEV A + A              
Sbjct: 16  WEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRPSLKNDLEK 75

Query: 64  ---------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                              +     +TLEPC+ YG++P C+  +     +RVV+  ++ +
Sbjct: 76  LEDPKILSDFLKTHHNNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIATEENE 135

Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMA 167
            +  G      ++   I+   +E++ K  L  +  R +E++    L K+A+    M G  
Sbjct: 136 AKKGGLARLKKARIETIICHNLENKAKDLLLPF--RIMEQKGRFNLFKLALR---MNGDY 190

Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILD 225
             G   ITG  S    H  RA  + ++V   T+  D+P L  R   +  Q  +P   IL 
Sbjct: 191 HHGK--ITGPKSVIFTHNQRAICETLIVSGKTIRTDNPLLDARFCDSFYQNKNPNIAILS 248

Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDP 254
            H  +  +SK+      AP  +V    DP
Sbjct: 249 KH-SIDPNSKVFS----APNRLVNAFYDP 272


>gi|300114535|ref|YP_003761110.1| bifunctional deaminase-reductase domain-containing protein
           [Nitrosococcus watsonii C-113]
 gi|299540472|gb|ADJ28789.1| bifunctional deaminase-reductase domain protein [Nitrosococcus
           watsonii C-113]
          Length = 364

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 98/217 (45%), Gaps = 32/217 (14%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
           I+  +A + D  I  A   S  I+ +  +   H LRA  DA+LVG GTV  D+P LT R 
Sbjct: 145 ISTHLAQTLDGKIAAASGHSQWISNYADRKHAHRLRALHDAVLVGRGTVEKDNPRLTVR- 203

Query: 212 NGLQEHSPMRIILD----------PH--FKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
             +   +P R+ILD          P+  F+    + ++ +  L  +         V+ L 
Sbjct: 204 -EVPGENPKRVILDRQCHLLAGEKPYRIFQEPGHNWLLHSDSLHKIETHYAIPRKVIPLG 262

Query: 260 FR----KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
            R    +KN  ++     DLK +L  +   G+ S+ VEGG+     F+     + + L+ 
Sbjct: 263 VRDQAGEKNGKLM-----DLKAILETIWSLGIRSVFVEGGSKTLSFFLAGGQTNLLHLHI 317

Query: 316 SQIVIGEGGIPS-------PLEEG-YLEKNFMCVRRD 344
           + +++G  G+PS        ++EG Y      C+ ++
Sbjct: 318 APLLLG-SGLPSFQLPPVARIQEGTYFHMTHFCLDKE 353


>gi|54022042|ref|YP_116284.1| putative reductase/deaminase [Nocardia farcinica IFM 10152]
 gi|54013550|dbj|BAD54920.1| putative reductase/deaminase [Nocardia farcinica IFM 10152]
          Length = 373

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 11/187 (5%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL- 207
           R ++ L  A+S D  +   G   + ++     ++V  +RA+SDAILVG  T+  DDP L 
Sbjct: 4   RPYVLLSAAMSLDGHLDDVGPERLRLSDAADFDRVDRVRAESDAILVGAQTLRRDDPRLL 63

Query: 208 --------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
                        G  EH P+++ +    +L    ++      A ++  T      L   
Sbjct: 64  VADQARRAARVAAGKPEH-PLKVTVTATGRLDAGLRVWHQGG-AKLVYTTAAGAAALGDT 121

Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
                  ++  +  DL  LL  L  RGV  L+VEGG  V  +F+ + L D + L  + ++
Sbjct: 122 LTGLAEVVVLGETIDLGALLDDLGARGVERLMVEGGTRVHTAFLAADLADELQLAVAPLL 181

Query: 320 IGEGGIP 326
           +G  G P
Sbjct: 182 VGAAGAP 188



 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 63/141 (44%), Gaps = 14/141 (9%)

Query: 16  RFSRWHVGLTSTNP------SVACLIVKDGIVIGRGVTAYGGCP-HAEVQAL---EEAGE 65
           RF R  + L   +P      SV  +IV DG  I  G +       HAE  AL   +    
Sbjct: 230 RFLRRAIELAHASPPSPTAFSVGAVIVADGAEIATGYSRETDPKVHAEEAALNKLDPRDP 289

Query: 66  EARGATAYVTLEPCSHYGRS--PPCAQFIIECGIRRVVVCVDDPDVRVSG-RGLQWLSQK 122
               AT Y TLEPCS    +  PPC   I+  GI RVV+   +P   V    G++ L + 
Sbjct: 290 RLSRATIYSTLEPCSQRATAGRPPCTDRILAAGIPRVVIAWREPSTFVVNCVGVEKLREH 349

Query: 123 GIIVDRMME-SEGKIFLHAYL 142
           G+ V  + E +E    ++ +L
Sbjct: 350 GVDVVELPELAEAATAMNRHL 370


>gi|331239010|ref|XP_003332159.1| hypothetical protein PGTG_13526 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309311149|gb|EFP87740.1| hypothetical protein PGTG_13526 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 275

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 91/210 (43%), Gaps = 54/210 (25%)

Query: 162 NMIGMAGCGSVP---------ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN 212
           +++   GC   P         + G I+      LRA+ D I+VGIGTVL DDP+L  R  
Sbjct: 43  DLLACPGCNQRPFVTLTYAQSLDGKIAGADGQHLRARHDGIMVGIGTVLNDDPQLNVRNI 102

Query: 213 GLQ---EHSPMRIILDPHFKLSLDSKIIKT---------------------------ALL 242
            L       P  I+LD   +   D K+IK                            A  
Sbjct: 103 SLTVPLAKQPQPIVLDTALRTPADCKLIKNYKNQTGKQPWLICARSAMSLQRRQELEAAG 162

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           A VI +T   +   A  ++ K       +  DL+K+L +    G+  L++EGGAA+  S 
Sbjct: 163 ARVIPITNGMN---AWTYKAK-------EGLDLEKVLEVCKLNGINRLMIEGGAAIISSI 212

Query: 303 IN----SRLVDSIILYRSQIVIGEG-GIPS 327
           +N    + +++ +I+  S  ++GEG GI S
Sbjct: 213 LNQVSDNPILNILIVTVSPYMVGEGIGIKS 242


>gi|210135672|ref|YP_002302111.1| riboflavin biosynthesis protein [Helicobacter pylori P12]
 gi|210133640|gb|ACJ08631.1| riboflavin biosynthesis protein [Helicobacter pylori P12]
          Length = 344

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 114/264 (43%), Gaps = 45/264 (17%)

Query: 24  LTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE----------------- 65
           L   NPSVAC+++ K+  ++          PHAEV A + A +                 
Sbjct: 21  LALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPHLKNDLEKLEDPK 80

Query: 66  ------EARGATAY------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 + R   A+      +TLEPC+ YG++P C++ +     +RVV+  ++ + +  G
Sbjct: 81  ILSDFLKTRHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIAAEENEAKKGG 140

Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSV 172
                 ++   ++   +E++ K  L  +  R +E++    L K+A+    M G    G  
Sbjct: 141 LARLQKARIETMICHNLENKAKDLLLPF--RVMEQKGRFNLFKLALR---MNGDYHHGK- 194

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKL 230
            ITG  S    H  RA  D +++   T+  D+P L  R   +     +P   IL  H  +
Sbjct: 195 -ITGQKSVIFTHNQRAICDTLIISGKTIRTDNPLLDARFCDSFYHNKNPNIAILSKH-SI 252

Query: 231 SLDSKIIKTALLAPVIIVTENDDP 254
           + +SK+      AP  +V   ++P
Sbjct: 253 NPNSKVFS----APNRLVNIFNNP 272


>gi|298735524|ref|YP_003728045.1| riboflavin biosynthesis protein RibG [Helicobacter pylori B8]
 gi|298354709|emb|CBI65581.1| Riboflavin biosynthesis protein (RibG) [Helicobacter pylori B8]
          Length = 344

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 137/335 (40%), Gaps = 77/335 (22%)

Query: 24  LTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EAGEEAR 68
           L   NPSVAC+++ K   ++          PHAEV A +              E  E+ +
Sbjct: 21  LALENPSVACMVLDKHHEILSLETHKKAKTPHAEVLAAKSALKILRPSLKNDLEKLEDPK 80

Query: 69  GATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
             + +               +TLEPC+ YG++P C++ +     +RVV+  ++ + +  G
Sbjct: 81  TLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIAAEENEAKKGG 140

Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSV 172
                 ++   I+   +E++ K  L  +  R +E++    L K+A+    M G    G  
Sbjct: 141 LARLQKARIETIICHNLENKAKDLLLPF--RIMEQKGRFNLFKLALR---MNGDYHHGK- 194

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKL 230
            ITG  S    H  RA  + +++   T+  D+P L  R   +  Q  +P   IL    K 
Sbjct: 195 -ITGQKSVIFTHNQRAICNTLIISGKTIRTDNPLLDARFCDHFYQNKNPNIAILS---KR 250

Query: 231 SLD--SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           S+D  SK+      AP  +V    DP                  +DL       + +G  
Sbjct: 251 SIDPNSKVFS----APNRLVNTFHDP------------------KDLP------LEKGFN 282

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
              +EGG  +  S  N   +D+++L+    +IGE 
Sbjct: 283 --FIEGGWELFESLRNK--IDALLLHSHASMIGEA 313


>gi|317013277|gb|ADU83885.1| riboflavin biosynthesis protein [Helicobacter pylori Lithuania75]
          Length = 344

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 38/219 (17%)

Query: 24  LTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EAGEEAR 68
           L   NPSVAC+++ K   ++          PHAEV A +              E  E+ +
Sbjct: 21  LALENPSVACMVLDKHHEILSLETHKKAKTPHAEVLAAQSALKILRPHLKNDLEKLEDPK 80

Query: 69  GATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
             + +               +TLEPC+ YG++P C++ +     +RVV+  ++ + +  G
Sbjct: 81  TLSDFLKKHHNNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIAAEENEAKKGG 140

Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSV 172
                 ++   ++ R +E++ K  L  +  R +E++    L K+A+    M G    G  
Sbjct: 141 LARLQKARIETMICRNLENKAKDLLLPF--RVMEQKGRFNLFKLALR---MNGDYYHGK- 194

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
            ITG  S    H  RA  D +++   T+  D+P L  R 
Sbjct: 195 -ITGQKSVIFTHNQRAICDTLIISGKTIRTDNPLLDSRF 232


>gi|290959312|ref|YP_003490494.1| reductase [Streptomyces scabiei 87.22]
 gi|260648838|emb|CBG71952.1| putative reductase [Streptomyces scabiei 87.22]
          Length = 385

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 32  ACLIVKDGIVIGRGVTAYGGCP--HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSP 86
           A ++ +DG  + RG +  GG P  HAE  AL   + A      AT Y +LEPC+     P
Sbjct: 264 AVVVAEDGTELARGHSREGGDPVVHAEEAALAKIDPADPRLASATVYSSLEPCARRASRP 323

Query: 87  -PCAQFIIECGIRRVVVCVDDPDVRV 111
            PCA+ +++ GIRRVV    +PD  V
Sbjct: 324 APCARLVLDAGIRRVVTAWREPDTFV 349


>gi|296446869|ref|ZP_06888806.1| bifunctional deaminase-reductase domain protein [Methylosinus
           trichosporium OB3b]
 gi|296255640|gb|EFH02730.1| bifunctional deaminase-reductase domain protein [Methylosinus
           trichosporium OB3b]
          Length = 252

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 89/187 (47%), Gaps = 7/187 (3%)

Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
           + A  +    +R  +  ++  S D  I      S  I+G  + + +H +RA  DA++VG 
Sbjct: 19  IFAPFSETPSERPFVVGQVGQSLDGRIATLCGESRDISGQAALDHLHRIRAHVDAVIVGA 78

Query: 198 GTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
            T++ DDP+L+ R   +   +P R+++DP  +L    + +       +++  E      +
Sbjct: 79  RTIVLDDPQLSVRR--VPGTNPARVVIDPSGRLDSRGRWLADDGARRILVTGERS----S 132

Query: 258 LAFRKKNINI-IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
           ++   + I +  +        ++  L  RG+  +LVEGGA    +F+ +  +D + +  +
Sbjct: 133 VSCGAETIRLESHAGIIPPAAIVEALFSRGLKRILVEGGARTLSTFLETGHLDRLHVLVA 192

Query: 317 QIVIGEG 323
            ++IG G
Sbjct: 193 PMIIGSG 199


>gi|317181190|dbj|BAJ58976.1| riboflavin biosynthesis protein [Helicobacter pylori F32]
          Length = 344

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 98/225 (43%), Gaps = 41/225 (18%)

Query: 20  W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63
           W H  L   NPSVAC+++ K+  ++          PHAEV A +              E 
Sbjct: 16  WEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPGLKNDLEK 75

Query: 64  GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            E+ +  + +               +TLEPC+ YG++P C+  +     +RVV+  ++ +
Sbjct: 76  LEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIATEENE 135

Query: 109 VRVSGRG-LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGM 166
            +  G   LQ     G++ +  +E++ K  L  +  R +E++    L K+A+    M G 
Sbjct: 136 AKKGGLARLQKARIDGVVCES-LENKAKDLLLPF--RIMEQKGRFNLFKLALR---MNGD 189

Query: 167 AGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
              G   ITG  S    H  RA  D ++V   T+  D+P L  R 
Sbjct: 190 YCHGK--ITGQKSVIFTHNQRAVCDTLIVSGKTIRTDNPLLDARF 232


>gi|291513963|emb|CBK63173.1| Pyrimidine reductase, riboflavin biosynthesis [Alistipes shahii WAL
           8301]
          Length = 359

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 55/111 (49%), Gaps = 9/111 (8%)

Query: 43  GRGVTAY----GGCPHAEVQALE---EAGEEARGATAYVTLEPCSHYGRSP-PCAQFIIE 94
           GR  T Y        HAE +A+    +AG E RGA  Y ++EPCS     P  C Q I+ 
Sbjct: 249 GRSFTGYTHETSPTHHAEQEAIRKALDAGAELRGAAIYSSMEPCSQRKSEPESCTQLILR 308

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME-SEGKIFLHAYLTR 144
            G  RVV  + +PD  V  RG Q L + G+ V    E +EG    +A+L R
Sbjct: 309 HGFARVVFALYEPDRFVRCRGAQTLREAGVDVRVYPELAEGVRRANAHLGR 359


>gi|315453509|ref|YP_004073779.1| Riboflavin biosynthesis protein [Helicobacter felis ATCC 49179]
 gi|315132561|emb|CBY83189.1| Riboflavin biosynthesis protein, priboflavin-specific deaminase
           [Helicobacter felis ATCC 49179]
          Length = 343

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 89/224 (39%), Gaps = 41/224 (18%)

Query: 20  WHV-GLTSTNPSVACLIVKDGI-VIGRGVTAYGGCPHAEVQALEEA-------------- 63
           W V  L   NPSVAC+++     ++          PHAEV+AL EA              
Sbjct: 14  WEVQTLALPNPSVACMVLDQNYRLLSLQTHTKAHTPHAEVRALAEAFNALSAVPFPKDID 73

Query: 64  ---------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                           +  +  T  VTLEPC+H+G++PPCA  +     +RV+V   +  
Sbjct: 74  PLDKQANYNFLAQNHSDLFKECTLLVTLEPCNHFGKTPPCAALLCALKPKRVIVGALEQH 133

Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMA 167
               G GL+ L + GI V  +        L+ +  + + KR    L KIA   D      
Sbjct: 134 PPAQG-GLKRLQEAGIEVIVLDLPACYDLLYPF--KCLSKRGVFNLFKIATRLD------ 184

Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
           G     I+G  S N  H  R  +  +++   +   D P L  R 
Sbjct: 185 GNYQGKISGTKSLNFTHNQRGVAQTLIISGQSARTDRPLLDHRF 228


>gi|284173977|ref|ZP_06387946.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
           solfataricus 98/2]
          Length = 211

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 4/144 (2%)

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           K + H +R++ DA++VG  TV  D+P LT +  G    +P+R+++   F L    KI  T
Sbjct: 32  KQRQHEIRSEVDAVMVGANTVRVDNPSLTVKY-GKNRRNPIRVVVTRSFNLDPSYKIFTT 90

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
                 +I T N +      F +K + I+         L  +     V  L+VEGG  + 
Sbjct: 91  P--PSTVIYTSNYESEKVEEFIRKGV-IVRKFLHLDDLLEDLYDNFNVRRLMVEGGGHLI 147

Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323
             FI   L D I +  S  + G G
Sbjct: 148 WWFIKDNLYDEIRITISPRIFGNG 171


>gi|294630170|ref|ZP_06708730.1| riboflavin/cytosine deaminase [Streptomyces sp. e14]
 gi|292833503|gb|EFF91852.1| riboflavin/cytosine deaminase [Streptomyces sp. e14]
          Length = 422

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 32  ACLIVKDGIVIGRGVTAYGGCP--HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSP 86
           A ++  DG  + RG +   G P  HAE  AL   + A     GAT Y +LEPC+     P
Sbjct: 299 AVVVAADGTELARGHSREAGDPVAHAEEAALAKIDPADPRLPGATVYSSLEPCARRASRP 358

Query: 87  -PCAQFIIECGIRRVVVCVDDPDVRV 111
            PCA+ I++ G+RRVV    +PD  V
Sbjct: 359 RPCARLILDAGVRRVVTAWREPDTFV 384



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           ++ L  AVS D  +   G   + ++G    ++V  +RA  DAILVG GT+ AD+P L
Sbjct: 5   YVLLSAAVSLDGYLDDTGPDRLLLSGPADFDRVDEVRASVDAILVGAGTLRADNPRL 61


>gi|15898882|ref|NP_343487.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
           solfataricus P2]
 gi|2493564|sp|P95872|RIB7_SULSO RecName: Full=Putative 5-amino-6-(5-phosphoribosylamino)uracil
           reductase; AltName: Full=HTP reductase
 gi|1707704|emb|CAA69508.1| riboflavin biosynthesis protein ribG [Sulfolobus solfataricus P2]
 gi|13815385|gb|AAK42277.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase (ribD)
           [Sulfolobus solfataricus P2]
 gi|261603290|gb|ACX92893.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Sulfolobus solfataricus 98/2]
          Length = 213

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 4/144 (2%)

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           K + H +R++ DA++VG  TV  D+P LT +  G    +P+R+++   F L    KI  T
Sbjct: 34  KQRQHEIRSEVDAVMVGANTVRVDNPSLTVKY-GKNRRNPIRVVVTRSFNLDPSYKIFTT 92

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
                 +I T N +      F +K + I+         L  +     V  L+VEGG  + 
Sbjct: 93  P--PSTVIYTSNYESEKVEEFIRKGV-IVRKFLHLDDLLEDLYDNFNVRRLMVEGGGHLI 149

Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323
             FI   L D I +  S  + G G
Sbjct: 150 WWFIKDNLYDEIRITISPRIFGNG 173


>gi|225023945|ref|ZP_03713137.1| hypothetical protein EIKCOROL_00812 [Eikenella corrodens ATCC
           23834]
 gi|224942970|gb|EEG24179.1| hypothetical protein EIKCOROL_00812 [Eikenella corrodens ATCC
           23834]
          Length = 254

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 17/133 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
            P       +M  AL+ +     L +    V  ++V+ G +IGRG    VT +  C HAE
Sbjct: 101 FPPPEESEHWMQQALQLA--EQALAAGEVPVGAVVVRRGEIIGRGANACVTEHSVCRHAE 158

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL EAG         G   YVTLEPCS       CA  I++  IRR++    +P    
Sbjct: 159 IAALTEAGRRLGNYRLDGCDLYVTLEPCSM------CAGAIMQSRIRRLIYAAAEPKTGA 212

Query: 112 SGRGLQWLSQKGI 124
           +G  L   + K +
Sbjct: 213 AGSMLDLFANKQL 225


>gi|307638162|gb|ADN80612.1| Diamino hydroxy phosphoribosyl amino pyrimidine
           deaminase/5-amino-6-5-phosphoribosyl amino
           uracilreductase [Helicobacter pylori 908]
 gi|325996761|gb|ADZ52166.1| Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-5-phosphoribosylamino uracil
           reductase [Helicobacter pylori 2018]
 gi|325998356|gb|ADZ50564.1| putative riboflavin specific deaminase [Helicobacter pylori 2017]
          Length = 344

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 110/264 (41%), Gaps = 45/264 (17%)

Query: 24  LTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE----------------- 65
           L   NPSVAC+++ K+  ++          PHAEV A + A +                 
Sbjct: 21  LALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPSLKSDLEKLEDPK 80

Query: 66  ------EARGATAY------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 + R   A+      +TLEPC+ YG++P C+  +     +RVV+  ++ + +  G
Sbjct: 81  ILSDFLKTRHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIAAEENEAKKGG 140

Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSV 172
                 +    ++   +E++ K  L  +  R +E+R    L K+A+    M G    G  
Sbjct: 141 LARLQKAHIETMICCNLENKAKDLLLPF--RIMEQRGRFNLFKLALR---MNGDYHHGK- 194

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKL 230
            ITG  S    H  RA  D +++   T+  D+P L  R   N  Q  +P   IL     +
Sbjct: 195 -ITGQKSVIFTHNQRAVCDTLIISGKTIRTDNPLLDTRFCDNFYQGKNPNIAILSKR-SI 252

Query: 231 SLDSKIIKTALLAPVIIVTENDDP 254
           S  SK+      AP  +V    DP
Sbjct: 253 SPHSKVFS----APNRLVNTFHDP 272


>gi|291302010|ref|YP_003513288.1| bifunctional deaminase-reductase domain-containing protein
           [Stackebrandtia nassauensis DSM 44728]
 gi|290571230|gb|ADD44195.1| bifunctional deaminase-reductase domain protein [Stackebrandtia
           nassauensis DSM 44728]
          Length = 215

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 15/195 (7%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           +R  + L  A+S D  +  A    + ++     N+V  LR   DAILVG  TV  D+P L
Sbjct: 4   RRPWVLLSAAMSLDGYLDDATATRLVLSNDEDLNRVRQLRGHYDAILVGAETVRRDNPSL 63

Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK---- 263
              ++G Q   P ++ L     L   S+   T   AP+++      P +A   R++    
Sbjct: 64  RA-VDGPQ---PRKVTLTATGDLDPASRFFTTG-AAPLVLCP----PPVAEELRRRLGER 114

Query: 264 -NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
             +  +      L ++L  L   GV  L+VEGG +V   F+   L D + L  +   +G+
Sbjct: 115 AEVQSLPAGA-GLAEILQTLWNLGVRRLMVEGGGSVHTQFLTQGLADELRLAVAPFFVGD 173

Query: 323 GGIPSPLEEGYLEKN 337
              P   E G    +
Sbjct: 174 AAAPRFTEPGKFPHD 188


>gi|256390088|ref|YP_003111652.1| bifunctional deaminase-reductase domain-containing protein
           [Catenulispora acidiphila DSM 44928]
 gi|256356314|gb|ACU69811.1| bifunctional deaminase-reductase domain protein [Catenulispora
           acidiphila DSM 44928]
          Length = 230

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 85/204 (41%), Gaps = 19/204 (9%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           +R H+ L  A+S D  +       + ++     ++V  LRA SDAI+VG  T+  DDP L
Sbjct: 3   ERPHVILSAAMSLDGHLDDTTPDRLMLSDDADFDRVDALRAASDAIMVGAETIRRDDPRL 62

Query: 208 TCR---------LNGLQEHSPMRIILDPHFKLSLDSKIIKTA-----LLAPVIIVTENDD 253
             R           GL EH P+++ +     L  +++   T        A   + T+ D 
Sbjct: 63  VIRDPERRADRVRRGLAEH-PVKVTVTGAGALDPEARFFTTGGHKLVYCADAAVPTQAD- 120

Query: 254 PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
               LA       +      D   +L  L  RG+  L+VEGG+++   F+   L D I L
Sbjct: 121 ---RLATVPDTEVVAAGALVDFPGILADLKRRGIERLMVEGGSSLHTRFLAEDLADEIHL 177

Query: 314 YRSQIVIGEGGIPSPLEEGYLEKN 337
             +   +G+   P  +      +N
Sbjct: 178 AIAPFFVGDDQAPRFVRAAEFPQN 201


>gi|159038150|ref|YP_001537403.1| deaminase-reductase domain-containing protein [Salinispora
           arenicola CNS-205]
 gi|157916985|gb|ABV98412.1| bifunctional deaminase-reductase domain protein [Salinispora
           arenicola CNS-205]
          Length = 230

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 88/213 (41%), Gaps = 44/213 (20%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           +  R ++ L  AVS D  I  A    + ++     ++V  +RA  DAILVG  T+  DDP
Sbjct: 1   MSDRPYVLLSCAVSVDGYIDDATEDRLLLSNAADVDRVDEVRAGCDAILVGAATIRKDDP 60

Query: 206 ELTCRLNGLQEH--------SPMRII------LDP---HFKLSLDSKIIKTALLA----- 243
            L  R    ++         +P++        LDP    F     +K++ TA  A     
Sbjct: 61  RLLVRSQARRDTRIHRGRPATPLKATITGRGDLDPTAQFFTAGDSTKVVYTATSALDKTC 120

Query: 244 ----PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
                V  V +  +PV                  DL ++L  L  RGV  L+VEGG ++ 
Sbjct: 121 ETVGTVADVVDAGEPV------------------DLDRVLADLASRGVARLMVEGGGSMH 162

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
             F+ + L D + L  +   +G+   P  + +G
Sbjct: 163 TMFLTAGLADELHLVVAPFFVGDSRAPRFVYDG 195


>gi|325068552|ref|ZP_08127225.1| riboflavin biosynthesis protein RibD [Actinomyces oris K20]
          Length = 181

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 22/136 (16%)

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           +++  H LR Q DAI+VG GT LADDP LT R    Q   P    L P  ++ + S+ + 
Sbjct: 3   ARHDAHRLRRQCDAIMVGTGTALADDPALTVRDEAGQ---PAPAHLQP-LRVVVGSRSL- 57

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
                P       DD  L L               D + +L +L  R +  +L+EGG  +
Sbjct: 58  -----PATSRVLADDHYLLLP------------DHDPRAVLAVLAEREIRHVLLEGGPTL 100

Query: 299 AHSFINSRLVDSIILY 314
           A +F+ + LVD ++ Y
Sbjct: 101 ATAFLRAGLVDQVVAY 116


>gi|289627113|ref|ZP_06460067.1| CMP/dCMP deaminase, zinc-binding protein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330869937|gb|EGH04646.1| CMP/dCMP deaminase, zinc-binding protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 271

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 85/195 (43%), Gaps = 26/195 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-A 63
           +F  + M+AA+      +   ++ P V  +IVK+G VI  G        HAE  A+E+  
Sbjct: 5   AFGGQAMNAAIE----QLKKCTSYPKVGAVIVKNGEVISTGYRGEVSGKHAERVAIEKLP 60

Query: 64  GEEARGATAYVTLEPC-SHYGRSP--PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             +  G+T Y TLEPC   +G  P   CA  + +  +  VV+ V DP+ R+  +G + L 
Sbjct: 61  NPDLTGSTIYTTLEPCVEMHGLQPHKSCAGLLKDLNVEHVVIGVLDPNGRIYCQGYEELI 120

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS--VPITGFI 178
           + G+ V          F    L  QVE     T K     D  IG    G   V + G  
Sbjct: 121 KAGVKV---------TFFTPELRNQVESS---TFKF----DCNIGYGPTGKRRVAVVGSG 164

Query: 179 SKNQVHLLRAQSDAI 193
            K ++H      D++
Sbjct: 165 KKFKIHASEKSLDSV 179


>gi|15612463|ref|NP_224116.1| putative riboflavin-specific deaminase [Helicobacter pylori J99]
 gi|4156003|gb|AAD06964.1| putative RIBOFLAVIN-SPECIFIC DEAMINASE [Helicobacter pylori J99]
          Length = 344

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 42/221 (19%)

Query: 24  LTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE----------------- 65
           L   NPSVAC+++ K+  ++          PHAEV A + A +                 
Sbjct: 21  LALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPHLKSDLEKLEDPK 80

Query: 66  ------EARGATAY------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 + R   A+      +TLEPC+ YG++P C+  +     +RV++  ++ + +   
Sbjct: 81  ILSDFLKTRHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVIIATEENEAKKG- 139

Query: 114 RGLQWLSQKGI--IVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCG 170
            GL+ L +  I  I+   +E++ K  L  +  R +E++    L K+A+    M G    G
Sbjct: 140 -GLERLQKAHIETIICHNLENKAKNLLLPF--RVMEQKGRFNLFKLALR---MNGDYHHG 193

Query: 171 SVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
              ITG  S    H  RA  D +++   T+  D+P L  R 
Sbjct: 194 K--ITGQKSVIFTHNQRAVCDTLIISGKTIRTDNPLLDARF 232


>gi|227826855|ref|YP_002828634.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
           islandicus M.14.25]
 gi|227829432|ref|YP_002831211.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
           islandicus L.S.2.15]
 gi|229578215|ref|YP_002836613.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
           islandicus Y.G.57.14]
 gi|229583070|ref|YP_002841469.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
           islandicus Y.N.15.51]
 gi|229584037|ref|YP_002842538.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
           islandicus M.16.27]
 gi|284996814|ref|YP_003418581.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Sulfolobus islandicus L.D.8.5]
 gi|227455879|gb|ACP34566.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Sulfolobus islandicus L.S.2.15]
 gi|227458650|gb|ACP37336.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
           pyrimidine1-reductase [Sulfolobus islandicus M.14.25]
 gi|228008929|gb|ACP44691.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Sulfolobus islandicus Y.G.57.14]
 gi|228013786|gb|ACP49547.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
           pyrimidine1-reductase [Sulfolobus islandicus Y.N.15.51]
 gi|228019086|gb|ACP54493.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Sulfolobus islandicus M.16.27]
 gi|284444709|gb|ADB86211.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Sulfolobus islandicus L.D.8.5]
 gi|323473972|gb|ADX84578.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
           pyrimidine1-reductase [Sulfolobus islandicus REY15A]
 gi|323476967|gb|ADX82205.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
           pyrimidine1-reductase [Sulfolobus islandicus HVE10/4]
          Length = 211

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 4/144 (2%)

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           K + H +R++ DA++VG  TV  D+P LT + +     +P+R+++   F L    KI  T
Sbjct: 32  KQRQHEIRSEVDAVMVGANTVRVDNPSLTVKYSK-NRRNPIRVVVTRSFNLDPSYKIFTT 90

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
                 I+ T N +      F +K + I+         L  +     V  L+VEGG  + 
Sbjct: 91  P--PSTIVYTSNYESEKVEEFNRKGV-IVRKFLHLDDLLEDLYNSFNVKRLMVEGGGHLI 147

Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323
             FI   L D I +  S  + G G
Sbjct: 148 WWFIRDNLYDEIRITISPRIFGNG 171


>gi|323694203|ref|ZP_08108379.1| cytidine and deoxycytidylate deaminase [Clostridium symbiosum
           WAL-14673]
 gi|323501676|gb|EGB17562.1| cytidine and deoxycytidylate deaminase [Clostridium symbiosum
           WAL-14673]
          Length = 155

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 17/127 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D ++M AA+R ++    L      + C+IV +G +IGRG    +       HAE+ A+++
Sbjct: 4   DEKYMRAAIREAKKAYALGEV--PIGCVIVFEGKIIGRGYNRRIADKNVLSHAEINAIKK 61

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++       G T Y+TLEPC      P CA  I++  I +V++   +P    +G  + 
Sbjct: 62  ACKKMGDWRLEGCTMYITLEPC------PMCAGAIVQARIPKVLIGSMNPKAGCAGSVMN 115

Query: 118 WLSQKGI 124
            L +KG 
Sbjct: 116 LLDEKGF 122


>gi|238618991|ref|YP_002913816.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
           islandicus M.16.4]
 gi|238380060|gb|ACR41148.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
           pyrimidine1-reductase [Sulfolobus islandicus M.16.4]
          Length = 211

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 4/144 (2%)

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           K + H +R++ DA++VG  TV  D+P LT + +     +P+R+++   F L    KI  T
Sbjct: 32  KQRQHEIRSEVDAVMVGANTVRVDNPSLTVKYSK-NRRNPIRVVVTRSFNLDPSYKIFTT 90

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
                 I+ T N +      F +K + I+         L  +     V  L+VEGG  + 
Sbjct: 91  P--PSTIVYTSNYESEKVEEFSRKGV-IVRKFLHLDDLLEDLYNSFNVKRLMVEGGGHLI 147

Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323
             FI   L D I +  S  + G G
Sbjct: 148 WWFIRDNLYDEIRITISPRIFGNG 171


>gi|323487362|ref|ZP_08092661.1| tRNA-specific adenosine deaminase [Clostridium symbiosum WAL-14163]
 gi|323399323|gb|EGA91722.1| tRNA-specific adenosine deaminase [Clostridium symbiosum WAL-14163]
          Length = 184

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 17/127 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D ++M AA+R ++    L      + C+IV +G +IGRG    +       HAE+ A+++
Sbjct: 33  DEKYMRAAIREAKKAYALGEV--PIGCVIVFEGKIIGRGYNRRIADKNVLSHAEINAIKK 90

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++       G T Y+TLEPC      P CA  I++  I +V++   +P    +G  + 
Sbjct: 91  ACKKMGDWRLEGCTMYITLEPC------PMCAGAIVQARIPKVLIGSMNPKAGCAGSVMN 144

Query: 118 WLSQKGI 124
            L +KG 
Sbjct: 145 LLDEKGF 151


>gi|302868074|ref|YP_003836711.1| bifunctional deaminase-reductase domain-containing protein
           [Micromonospora aurantiaca ATCC 27029]
 gi|302570933|gb|ADL47135.1| bifunctional deaminase-reductase domain protein [Micromonospora
           aurantiaca ATCC 27029]
          Length = 229

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 89/201 (44%), Gaps = 22/201 (10%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R ++ L  A+S D  I  A    + ++     ++V   RA  DAI+VG  TV  DDP L 
Sbjct: 4   RPYVLLSCAMSIDGYIDDATTERLLLSNDDDLDRVDATRAGCDAIMVGAATVRRDDPRLL 63

Query: 209 CR---------LNGLQEHSPMRII------LDPHFKLSLDSKIIKTALLAPVIIVTENDD 253
            R           GL   SP+++       LDP  +       +K  +  P  +V +  +
Sbjct: 64  VRSERRRAERVARGLPP-SPVKVTVTGSGDLDPQARFFTAGDGLKL-VYCPSGVVDKARE 121

Query: 254 PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
            V A+     +  +   D    + ++  L GRGV  L+VEGG +V   F+ + L D + L
Sbjct: 122 QVGAV-----STVVDAGDPATPEAVVADLAGRGVARLMVEGGGSVHRQFLTAGLADELHL 176

Query: 314 YRSQIVIGEGGIPSPLEEGYL 334
             +   +G+G  P  + +G+ 
Sbjct: 177 VVAPFFVGDGRAPRFVGDGHF 197


>gi|257075687|ref|ZP_05570048.1| hypothetical protein Faci_01419 [Ferroplasma acidarmanus fer1]
          Length = 189

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 18/164 (10%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
           +I + +A+S +  I  A  G   I+  I   +V  +R   D +L+G  +V  D+P L   
Sbjct: 4   YIIINVAMSLNGKIS-AINGRYRISNDIDMTRVMDIRKNVDGVLLGANSVKVDNPVLN-- 60

Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270
                 ++  RIILD  F+L+ +  +      +   I ++N+  +       KN  II  
Sbjct: 61  ------YAKNRIILDEKFRLNDNYHVFDGK--SKSYIFSKNNKKI-------KNAEIIIL 105

Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
           D   +  +L  L   G+ S+LVEGG+ V + FI+ ++ D   ++
Sbjct: 106 DDLSITSILKKLYDMGIKSILVEGGSNVINQFIDEKIFDEFYIF 149


>gi|225376320|ref|ZP_03753541.1| hypothetical protein ROSEINA2194_01960 [Roseburia inulinivorans DSM
           16841]
 gi|225211696|gb|EEG94050.1| hypothetical protein ROSEINA2194_01960 [Roseburia inulinivorans DSM
           16841]
          Length = 166

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 17/123 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D ++M AA+R ++    L      + C+IV+DG +I RG     T      HAE+ A+++
Sbjct: 6   DEKYMKAAIREAKKAYALDEV--PIGCVIVQDGTIIARGYNRRNTEGNTLAHAELTAIKK 63

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++         T YVTLEPC        CA  I++  +++VV+   +P    +G  L 
Sbjct: 64  ASKKTGDWRLEDCTMYVTLEPCQM------CAGAIVQSRMKKVVIATMNPKAGCAGSVLN 117

Query: 118 WLS 120
            L 
Sbjct: 118 LLQ 120


>gi|207092337|ref|ZP_03240124.1| riboflavin biosynthesis protein [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 344

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 99/226 (43%), Gaps = 43/226 (19%)

Query: 20  W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63
           W H  L   NPSVAC+++ K+  ++           HAEV A +              E 
Sbjct: 16  WEHQTLALENPSVACMVLDKNHEILSLETHKKAKTSHAEVLAAKSALKILRPHLKSDLEK 75

Query: 64  GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            E+ +  + +               +TLEPC+ YG++P C+  +     +RVV+  ++ +
Sbjct: 76  LEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIAAEENE 135

Query: 109 VRVSGRGLQWLSQKGI--IVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIG 165
            +    GL+ L +  I  I+ R +E++ K  L  +  R +E++    L K+A+    M G
Sbjct: 136 AKKG--GLERLQKAHIETIICRNLENKAKNLLLPF--RIMEQKGRFNLFKLALR---MNG 188

Query: 166 MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
               G   ITG  S    H  RA  D +++   T+  D+P L  R 
Sbjct: 189 DYYHGK--ITGPKSVIFTHNQRAICDTLIISGKTIRTDNPLLDTRF 232


>gi|157374292|ref|YP_001472892.1| putative riboflavin biosynthesis protein RibD [Shewanella sediminis
           HAW-EB3]
 gi|157316666|gb|ABV35764.1| putative riboflavin biosynthesis protein RibD [Shewanella sediminis
           HAW-EB3]
          Length = 74

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 35/56 (62%)

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           TAYVTLE  S  GR+P CA  +++ GI+  V  + D D R  G+G+Q L  +G+ V
Sbjct: 15  TAYVTLENGSFVGRTPACAITLVKLGIKNAVASIQDRDPRNIGKGIQILESRGVTV 70


>gi|88602100|ref|YP_502278.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanospirillum
           hungatei JF-1]
 gi|88187562|gb|ABD40559.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanospirillum
           hungatei JF-1]
          Length = 226

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 12/188 (6%)

Query: 148 KRSHITLKIAVSQDNMIGMA-GCGSVPITGFISKNQ---VHLLRAQSDAILVGIGTVLAD 203
            R ++TL   V+ D  + +  G  S  +  F+S      +H +RA SDAI+VG  T+  D
Sbjct: 6   NRPYVTLVSEVTIDGKLTVTRGASSKLLMQFMSHEAEVLLHQIRADSDAIMVGANTIRID 65

Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE---NDDPVLALAF 260
           +  LT R   ++  +P+R+I      +S D+ ++     AP II      + +    LA 
Sbjct: 66  NSFLTVR--HVEGKNPIRVIPSSKADISPDANVLSPD--APTIIAVSARADKETCTILAE 121

Query: 261 RKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
           +   I I   +  DL  L+ +L  +  V SL++EGG+ +  +     L+D ++L     +
Sbjct: 122 KGAYIEICGDEFVDLPILMRLLFEKYSVQSLMIEGGSTLNGNMFQKGLIDELLLIHLPFI 181

Query: 320 IGEGGIPS 327
            G    PS
Sbjct: 182 AGGEDTPS 189


>gi|282164321|ref|YP_003356706.1| putative 2,5-diamino-6-hydroxy-4-(5- phosphoribosylamino)pyrimidine
           reductase [Methanocella paludicola SANAE]
 gi|282156635|dbj|BAI61723.1| putative 2,5-diamino-6-hydroxy-4-(5- phosphoribosylamino)pyrimidine
           reductase [Methanocella paludicola SANAE]
          Length = 227

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 11/186 (5%)

Query: 149 RSHITLKIAVSQDNMIGMA-GCGSVPITGFI---SKNQVHLLRAQSDAILVGIGTVLADD 204
           R ++TL   ++ D  + +  G  S  I G +   S+  +H  R + DAI+VG  T+  D+
Sbjct: 5   RPYVTLISEMTVDGKLTLKRGLSSKIIMGLMDMESQRFLHKKRTEFDAIMVGSNTIKIDN 64

Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP-VIIVTENDDPVLALAFRKK 263
             LT RL  ++  SP+R++      +   S ++     AP +I+V+    P    A R+K
Sbjct: 65  SILTNRL--VEGRSPVRVVPCSDASIPPGSNVLNHD--APTIIVVSGRASPEKVEAIRQK 120

Query: 264 NINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
              ++ C  +  DL+ ++  L  RG+  L+VEGG  +    I   ++D IIL +   +IG
Sbjct: 121 GAEVMVCGKEAVDLELMMEGLTKRGIKRLMVEGGPTLIWLLIQKHMIDHIILIQIPYIIG 180

Query: 322 EGGIPS 327
               PS
Sbjct: 181 GDSTPS 186


>gi|109946711|ref|YP_663939.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Helicobacter acinonychis str. Sheeba]
 gi|109713932|emb|CAJ98940.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Helicobacter acinonychis str. Sheeba]
          Length = 344

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 106/239 (44%), Gaps = 44/239 (18%)

Query: 24  LTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA------------ 70
           L   NPSVAC+++ K+  ++   V      PHAEV A + A +  R +            
Sbjct: 21  LALENPSVACMVLDKNHEILSLEVHKKAKTPHAEVLATKSALKILRPSLKIDLDQLEDPK 80

Query: 71  -----------TAY------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                       A+      +TLEPC+ YG++P C++ +     +RVV+ +++   +   
Sbjct: 81  ILSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIAIEENKAKKG- 139

Query: 114 RGLQWLSQKGI--IVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCG 170
            GL+ L +  +  ++   +E++ +  L  +  R +EK+    L K+A+    M G    G
Sbjct: 140 -GLERLKKAHVEALICPSLENKARDLLLPF--RIMEKKGRFNLFKLAL---RMNGDYQHG 193

Query: 171 SVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL-NGL-QEHSPMRIILDPH 227
              ITG  S    H  RA    ++V   T+  D+P L  R  +G  Q  +P   IL  H
Sbjct: 194 K--ITGQKSAIFTHNQRAVCGTLIVSGKTIRTDNPLLDARFCDGFYQGKNPNIAILSKH 250


>gi|37679027|ref|NP_933636.1| cytosine/adenosine deaminase [Vibrio vulnificus YJ016]
 gi|37197769|dbj|BAC93607.1| cytosine/adenosine deaminase [Vibrio vulnificus YJ016]
          Length = 181

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 22/176 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
            P S  D  FM  A+  +   +  +     V  ++VKDG VI  G    +  +    HAE
Sbjct: 6   QPFSLQDEVFMRRAIELAA--IAESEGEVPVGAVLVKDGEVIAEGWNQSIGQHDATAHAE 63

Query: 57  VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +Q L +AG+          T YVTLEPC      P CA  ++   ++R+V    D     
Sbjct: 64  IQTLRQAGQSLGNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVFGAPDLKAGA 117

Query: 112 SGRGLQWLSQKG----IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           +G  L   S +       +D+ ++ESE +  L A+  R+ ++   +  ++    D+
Sbjct: 118 AGTVLDLFSSQAAYHYATIDKGLLESECREQLQAFFKRRRKEIKALKKELQTQSDH 173


>gi|163802511|ref|ZP_02196404.1| molecular chaperone DnaK [Vibrio sp. AND4]
 gi|159173812|gb|EDP58627.1| molecular chaperone DnaK [Vibrio sp. AND4]
          Length = 178

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 71/173 (41%), Gaps = 29/173 (16%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59
           S  D RFM  A+  +            V  ++VKDG +I  G    + ++    HAE+Q 
Sbjct: 7   SPQDERFMRRAMELAEQ--AEAEGEVPVGAVLVKDGKIIAEGWNRSICSHDATAHAEIQT 64

Query: 60  LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           L +AGE          T YVTLEPC      P CA  ++   ++RVV     PD++    
Sbjct: 65  LRKAGETLGNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVYGA--PDLKAGAA 116

Query: 115 GL-------QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
           G        Q       +   ++E+E +  L A+  R   +R  I  K    Q
Sbjct: 117 GTVLNLFESQAAYHYATVESGLLENECRTQLQAFFKR---RRKEIKAKRQAQQ 166


>gi|269126070|ref|YP_003299440.1| bifunctional deaminase-reductase domain-containing protein
           [Thermomonospora curvata DSM 43183]
 gi|268311028|gb|ACY97402.1| bifunctional deaminase-reductase domain protein [Thermomonospora
           curvata DSM 43183]
          Length = 228

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 81/200 (40%), Gaps = 8/200 (4%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           +  R ++ L  A+S D  I  A    + ++     ++V  +RA  DAILVG  T+  DDP
Sbjct: 1   MSDRPYVLLSCAMSVDGYIDDARPERLRLSSPADFDRVDGVRATCDAILVGAETIRRDDP 60

Query: 206 ELTCRLNGLQEHSPMR--------IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
           +L  +    QE    R        + L     L   S+   T     ++       P LA
Sbjct: 61  KLLIKSPVRQERRAARGLPRQLTKVTLTLRGDLDPTSRFFTTGDCPKLVYAGSRAVPALA 120

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
                    I   D  D++ +L  L  RGV  L+VEGG  +   F+   L D + L  + 
Sbjct: 121 ERLEGVAEVIDGGDPVDVRLVLADLARRGVRRLMVEGGGGMHTLFLTEGLADELHLVVAP 180

Query: 318 IVIGEGGIPSPLEEGYLEKN 337
             IG+   P  +  G   ++
Sbjct: 181 FFIGDPSAPRFVHPGLFPQD 200


>gi|291302009|ref|YP_003513287.1| CMP/dCMP deaminase zinc-binding protein [Stackebrandtia nassauensis
           DSM 44728]
 gi|290571229|gb|ADD44194.1| CMP/dCMP deaminase zinc-binding protein [Stackebrandtia nassauensis
           DSM 44728]
          Length = 419

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 2/94 (2%)

Query: 30  SVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP-P 87
           SV  +IV DG V+  G +       HAE  AL +  ++  GAT Y +LEPC      P  
Sbjct: 25  SVGAVIVADGRVLATGYSRETDPHDHAEEAALSKLDQDLSGATVYSSLEPCGQRASRPVS 84

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           CA+ II   + RVV    +PD  V  +GL+ L++
Sbjct: 85  CAELIIAARVPRVVYAWREPDTFVQPKGLRLLAE 118


>gi|208435372|ref|YP_002267038.1| riboflavin biosynthesis protein [Helicobacter pylori G27]
 gi|208433301|gb|ACI28172.1| riboflavin biosynthesis protein [Helicobacter pylori G27]
          Length = 344

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 94/219 (42%), Gaps = 38/219 (17%)

Query: 24  LTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EAGEEAR 68
           L   NPSVAC+++ K+  ++          PHAEV A +              E  E+ +
Sbjct: 21  LALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPHLKSDLEKLEDPK 80

Query: 69  GATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
             + +               +TLEPC+ YG++P C+  +     +RVV+  ++ + +  G
Sbjct: 81  TLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIAAEENEAKKGG 140

Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSV 172
                 ++   ++   +E++ K  L  +  R +E++    L K+A+    M G    G  
Sbjct: 141 LARLQKARIETMICHNLENKAKDLLLPF--RVMEQKGRFNLFKLALR---MNGDYYHGK- 194

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
            ITG  S    H  RA  D +++   T+  D+P L  R 
Sbjct: 195 -ITGQKSVIFTHNQRAVCDTLIISGKTIRTDNPLLDTRF 232


>gi|87310393|ref|ZP_01092523.1| hypothetical protein DSM3645_29881 [Blastopirellula marina DSM
           3645]
 gi|87286892|gb|EAQ78796.1| hypothetical protein DSM3645_29881 [Blastopirellula marina DSM
           3645]
          Length = 481

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 19/129 (14%)

Query: 26  STNPSVACLIVK-DGIV--IGRGVTAYGGCPHAEVQALEE--AGEEARGATAYVTLEPCS 80
           S +P V  ++V+ DG +    RG    G   HAE   LE   A E   G   + TLEPC 
Sbjct: 21  SPSPQVGAVLVRPDGSIETAARGELRDGN--HAEFTLLERKCAAENLEGCVLFATLEPC- 77

Query: 81  HYGRSPP---CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV---DRMMES-- 132
              R+ P   CA+ I+   IR V V ++D + +V+G+G+++L + G+ V   DR ++   
Sbjct: 78  -LNRNSPKRGCARHIVGARIREVYVGIEDDNPKVAGKGIEYLRRSGVTVHLFDRELQEVI 136

Query: 133 --EGKIFLH 139
             E K F  
Sbjct: 137 LDENKSFFE 145


>gi|330833888|ref|YP_004408616.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Metallosphaera
           cuprina Ar-4]
 gi|329566027|gb|AEB94132.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Metallosphaera
           cuprina Ar-4]
          Length = 207

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 8/141 (5%)

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H+LR++ DAI++G  T   D+P LT  L  ++  +P+R+I+  +  L  + +I     L 
Sbjct: 36  HVLRSEVDAIMIGANTARIDNPSLT--LKYVKGTNPIRVIVTGNGHLDQNLRIFSVPPLT 93

Query: 244 PVIIVTENDDPVLA-LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             II T+N++P L  L   +  I      C  L+ L        V  ++VEGG  +  S 
Sbjct: 94  --IIYTKNENPQLENLTKNQVKIRKFLNICNILEDLYENF---SVKKVMVEGGGKLNWSL 148

Query: 303 INSRLVDSIILYRSQIVIGEG 323
           I    VD I L  S  + G G
Sbjct: 149 IKENCVDEIRLTISPRIFGSG 169


>gi|330445259|ref|ZP_08308911.1| tRNA-specific adenosine deaminase monomer [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328489450|dbj|GAA03408.1| tRNA-specific adenosine deaminase monomer [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 163

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 21/147 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++V +G VIG G    +  +    HAE+ AL +AG   E  R    T YVTLEPC  
Sbjct: 19  VGAVVVHNGQVIGEGWNRSIGQHDATAHAEIMALRQAGKVLENYRLLDTTVYVTLEPC-- 76

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P CA  ++   + +VV   DD     +G  +  LS  G+     +V  ++  E + 
Sbjct: 77  ----PMCAGAMVHSRVGKVVYGADDLKTGAAGSTMNLLSYDGVNHHVGLVSGVLADECRA 132

Query: 137 FLHAYLT-RQVEKRSHITLKIAVSQDN 162
            L A+   R+ EK++   L    +++N
Sbjct: 133 QLQAFFKRRRAEKKAAKQLAKQQAENN 159


>gi|320157222|ref|YP_004189601.1| tRNA-specific adenosine-34 deaminase [Vibrio vulnificus MO6-24/O]
 gi|319932534|gb|ADV87398.1| tRNA-specific adenosine-34 deaminase [Vibrio vulnificus MO6-24/O]
          Length = 181

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 22/159 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
            P S  D  FM  A+  +   +  +     V  ++VKDG VI  G    +  +    HAE
Sbjct: 6   QPFSLQDEVFMRRAIELAA--IAESEGEVPVGAVLVKDGEVIAEGWNQSIGQHDATAHAE 63

Query: 57  VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +Q L +AG+          T YVTLEPC      P CA  ++   ++R+V    D     
Sbjct: 64  IQTLRQAGQSLGNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVFGAPDLKAGA 117

Query: 112 SGRGLQWLSQK-----GIIVDRMMESEGKIFLHAYLTRQ 145
           +G  L   S +       I   ++ESE +  L A+  R+
Sbjct: 118 AGTVLDLFSSQAAYHYATIEKGLLESECRDQLQAFFKRR 156


>gi|197302614|ref|ZP_03167668.1| hypothetical protein RUMLAC_01343 [Ruminococcus lactaris ATCC
           29176]
 gi|197298196|gb|EDY32742.1| hypothetical protein RUMLAC_01343 [Ruminococcus lactaris ATCC
           29176]
          Length = 180

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 23/168 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D ++M  AL+ ++    L  T   + C+IV +G +I RG     T      HAE+ A+++
Sbjct: 22  DEKYMKEALKQAKKAYALEET--PIGCVIVHEGKIIARGYNRRNTDKSPLAHAEISAIKK 79

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL- 116
           A ++         T YVTLEPC        CA  II+  I RVVV   +P    +G  L 
Sbjct: 80  ASKKLGDWRLEECTLYVTLEPCQM------CAGAIIQSRIPRVVVGCMNPKAGCAGSVLN 133

Query: 117 ----QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
               Q  + +  +  +++E E  + +  +  R++  +  +  K  +S+
Sbjct: 134 LLDVQAFNHQAEVKTKVLEEECSLMMKQFF-RELRAKQKMKKKSLLSE 180


>gi|315505529|ref|YP_004084416.1| bifunctional deaminase-reductase domain protein [Micromonospora sp.
           L5]
 gi|315412148|gb|ADU10265.1| bifunctional deaminase-reductase domain protein [Micromonospora sp.
           L5]
          Length = 229

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 88/201 (43%), Gaps = 22/201 (10%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R ++ L  A+S D  I  A    + ++     ++V   RA  DAI+VG  TV  DDP L 
Sbjct: 4   RPYVLLSCAMSIDGYIDDATTERLLLSNDDDLDRVDATRAGCDAIMVGAATVRRDDPRLL 63

Query: 209 CR---------LNGLQEHSPMRII------LDPHFKLSLDSKIIKTALLAPVIIVTENDD 253
            R           GL   SP+++       LDP  +       +K  +  P  +V +  +
Sbjct: 64  VRSERRRAERVARGLPP-SPVKVTVTGSGDLDPQARFFTAGDGLKL-VYCPSGVVDKARE 121

Query: 254 PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
            V  +     +  +   D    + ++  L GRGV  L+VEGG +V   F+ + L D + L
Sbjct: 122 QVGGV-----STVVDAGDPATPEAVVADLAGRGVARLMVEGGGSVHRQFLTAGLADELHL 176

Query: 314 YRSQIVIGEGGIPSPLEEGYL 334
             +   +G+G  P  + +G+ 
Sbjct: 177 VVAPFFVGDGRAPRFVGDGHF 197


>gi|224154958|ref|XP_002337544.1| predicted protein [Populus trichocarpa]
 gi|222839542|gb|EEE77879.1| predicted protein [Populus trichocarpa]
          Length = 436

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 7/176 (3%)

Query: 154 LKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213
           +K A S D    +    S  IT   ++   H  RA++  IL GIGTV+ DDP L  R + 
Sbjct: 1   MKAASSLDGATALHNGTSQWITSPEARADGHAWRARACTILTGIGTVVEDDPRLNVR-DV 59

Query: 214 LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR 273
                P   ++D    + L +++++    A  +I T + D     A +     +I     
Sbjct: 60  ATPRQPRIAVVDSRLDMPLTARVLQAP--AGCLIYTSSRDASKTSALQDLGTTVIPMPNA 117

Query: 274 ----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
               DL  +L  L  RG   L VE G  +  S +   LVD ++LY +  ++G GG+
Sbjct: 118 HGKVDLCAMLRDLAARGTNELHVEAGFKLNGSLVREGLVDELLLYLAPKLLGTGGM 173


>gi|315180919|gb|ADT87833.1| zinc-binding domain protein [Vibrio furnissii NCTC 11218]
          Length = 189

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 24/177 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGC---PHAEV 57
           P S  D +FM  A+  +            V  ++VKDG +I  G   + G C    HAE+
Sbjct: 7   PFSPEDEQFMRRAMALAEQ--AEAEGEVPVGAVLVKDGHIIAEGWNRSIGACDATAHAEI 64

Query: 58  QALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           Q L +AGE          T YVTLEPC      P CA  ++   ++R+V    D     +
Sbjct: 65  QVLRQAGEALHNYRLLETTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAA 118

Query: 113 GRGLQWLSQK-----GIIVDRMMESEGKIFLHAYLTRQVE--KRSHITLKIAVSQDN 162
           G  L   S +       +   ++E E +  L A+  R+ +  K      K+  +QD+
Sbjct: 119 GTVLDLFSSQAAYHYATVEKGLLEDECRQQLQAFFQRRRKEIKARKEAEKLQAAQDD 175


>gi|302672151|ref|YP_003832111.1| CMP/dCMP deaminase zinc-binding domain-containing protein
           [Butyrivibrio proteoclasticus B316]
 gi|302396624|gb|ADL35529.1| CMP/dCMP deaminase zinc-binding domain-containing protein
           [Butyrivibrio proteoclasticus B316]
          Length = 190

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 17/127 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D +FM AA+  +R    L      + C+IV +G +IGRG     T      HAE+ A++ 
Sbjct: 27  DIKFMKAAITQARKAYVLGEV--PIGCVIVYEGKIIGRGYNRRNTDKTTLAHAEITAIKR 84

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AG+        G   YVTLEPC        CA  I++  I  V++  ++P    +G  L 
Sbjct: 85  AGKVIGDWRLEGCKLYVTLEPCQM------CAGAIVQARIPEVIMAAENPKAGCAGSVLD 138

Query: 118 WLSQKGI 124
            L+  G 
Sbjct: 139 ILNNPGF 145


>gi|45190643|ref|NP_984897.1| AER037Cp [Ashbya gossypii ATCC 10895]
 gi|54036278|sp|Q757H6|RIB7_ASHGO RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|44983622|gb|AAS52721.1| AER037Cp [Ashbya gossypii ATCC 10895]
          Length = 246

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 85/199 (42%), Gaps = 16/199 (8%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
           +TL  A S D  I         I+   +K   H LR     IL+G GT LADDP L CR 
Sbjct: 31  VTLTYAQSLDARIAKQKGERTVISHEETKTMTHYLRYHHSGILIGSGTALADDPGLNCRW 90

Query: 212 NG-------LQEHSPMRIILDPHFKLSL-DSKIIKTALL----APVIIVTENDDPVLALA 259
                     ++ SP  IILD   +     SKI     L    AP I+VT  +  V  L 
Sbjct: 91  TPAADGADCTEQSSPRPIILDVRGRWRYRGSKIEYLHNLGKGKAP-IVVTGGEPEVRELG 149

Query: 260 FRKKNINIIYCDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHS-FINSRLVDSIILYRSQ 317
                + +      +  +L   L     + S++VEGGA V +   +   +VDS+++    
Sbjct: 150 VSYLQLGVDEGGRLNWGELFERLYSEHHLESVMVEGGAEVLNQLLLRPDIVDSLVITIGS 209

Query: 318 IVIGEGGIP-SPLEEGYLE 335
             +G  G+  SP EE  LE
Sbjct: 210 KFLGSLGVAVSPAEEVNLE 228


>gi|260771319|ref|ZP_05880245.1| tRNA-specific adenosine-34 deaminase [Vibrio furnissii CIP 102972]
 gi|260613635|gb|EEX38828.1| tRNA-specific adenosine-34 deaminase [Vibrio furnissii CIP 102972]
          Length = 189

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 24/177 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGC---PHAEV 57
           P S  D +FM  A+  +            V  ++VKDG +I  G   + G C    HAE+
Sbjct: 7   PFSPEDEQFMRRAMALAEQ--AEAEGEVPVGAVLVKDGHIIAEGWNRSIGACDATAHAEI 64

Query: 58  QALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           Q L +AGE          T YVTLEPC      P CA  ++   ++R+V    D     +
Sbjct: 65  QVLRQAGEALHNYRLLETTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAA 118

Query: 113 GRGLQWLSQK-----GIIVDRMMESEGKIFLHAYLTRQVE--KRSHITLKIAVSQDN 162
           G  L   S +       +   ++E E +  L A+  R+ +  K      K+  +QD+
Sbjct: 119 GTVLDLFSSQAAYHYATVEKGLLEDECRQQLQAFFQRRRKEIKARKEAEKLRAAQDD 175


>gi|302559850|ref|ZP_07312192.1| riboflavin/cytosine deaminase [Streptomyces griseoflavus Tu4000]
 gi|302477468|gb|EFL40561.1| riboflavin/cytosine deaminase [Streptomyces griseoflavus Tu4000]
          Length = 363

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 6/88 (6%)

Query: 32  ACLIVKDGIVIGRGVTAYGGCP--HAEVQALEEAGE-EARGATA--YVTLEPCSHYGRSP 86
           A ++  DG  + RG +  GG P  HAE  AL +A   + R ATA  Y +LEPC+     P
Sbjct: 256 AVVVAADGTELARGHSREGGDPVVHAEEAALAKADPTDPRLATATVYSSLEPCARRASRP 315

Query: 87  P-CAQFIIECGIRRVVVCVDDPDVRVSG 113
             C + I++ G+RRVV    +PD  V G
Sbjct: 316 ASCVRLILDAGVRRVVTAWREPDTFVEG 343



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 11/185 (5%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL--- 207
           ++ L  AVS D  +   G   + ++G    ++V  +RA  DAILVG GT+ AD+P L   
Sbjct: 5   YVLLSAAVSLDGYLDDTGPERLLLSGPADFDRVDEVRASVDAILVGAGTLRADNPRLLVN 64

Query: 208 -----TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
                  RL   +   P+++ +    +L   ++   T     +    E  +    L    
Sbjct: 65  SPERRAARLAEGRTEYPLKVTVSGSGELDPAARFWHTGGEKVLYTTDEGAERARVLGI-A 123

Query: 263 KNINIIYCDCRDLKKLLTIL-VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            ++  +  +  D ++LL  L   RGV  L+VEGG  +    I   L D + L  + + +G
Sbjct: 124 ADVVPLGAEL-DWRRLLEHLHAARGVRRLMVEGGGLIHTQLITQGLADELQLAVAPLFVG 182

Query: 322 EGGIP 326
           +   P
Sbjct: 183 DPEAP 187


>gi|120554594|ref|YP_958945.1| deaminase-reductase domain-containing protein [Marinobacter
           aquaeolei VT8]
 gi|120324443|gb|ABM18758.1| bifunctional deaminase-reductase domain protein [Marinobacter
           aquaeolei VT8]
          Length = 288

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 97/227 (42%), Gaps = 18/227 (7%)

Query: 105 DDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164
           D P V+++G+  +      ++     ++   + L   L + V   S +  ++  S D  I
Sbjct: 32  DQPAVKINGKSWE------LVQPASEQARNLLSLFLPLCQPVTTNSRVIGQLGQSLDGRI 85

Query: 165 G-MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII 223
             + GC    I G      +H +RA  DA++VG GT   D+P LT R       +P+R++
Sbjct: 86  ATVTGCSRF-INGDDGITHLHRIRALCDAVVVGAGTASTDNPRLTVRRT--SGRNPVRVV 142

Query: 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC-------DCRDLK 276
           +D   ++     +  T   AP + +   D            +  + C            +
Sbjct: 143 IDRRQRVPASHHLF-TDGDAPTLHLIAGDYQPGPKTLDPTGVTTVPCLGSAENEAPASPE 201

Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           ++L +L   G+  + +EGG     SF+ + L+D + +  + ++IG G
Sbjct: 202 RILQVLQDFGLRKIFIEGGGVTVSSFLKAGLLDRLHVMVAPMIIGSG 248


>gi|150024567|ref|YP_001295393.1| dCMP deaminase [Flavobacterium psychrophilum JIP02/86]
 gi|149771108|emb|CAL42575.1| dCMP deaminase [Flavobacterium psychrophilum JIP02/86]
          Length = 142

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 36/148 (24%)

Query: 9   RFMSAALRFSRWHVGLTSTN-PSVACLIVKDGIVIGRGVTAYGGCP-------------- 53
           ++  A LR ++    L+  N   V  +IV+D ++I  G   Y G P              
Sbjct: 8   KYDKAYLRLAKEWSKLSYCNRKQVGAIIVRDKMIISDG---YNGSPSGFENCCEEQDGTT 64

Query: 54  -----HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE  A+     + +   GAT Y+TL PC        C++ I + GI+RVV   D
Sbjct: 65  KWYILHAEANAILKVARSTQSCEGATLYITLSPC------KECSKLIHQSGIKRVVYLED 118

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESE 133
             D      GL++L + G++V+++ E E
Sbjct: 119 YKD----NSGLEFLEKAGVLVEQIEEIE 142


>gi|89073121|ref|ZP_01159660.1| Putative cytosine/adenosine deaminase [Photobacterium sp. SKA34]
 gi|89051074|gb|EAR56531.1| Putative cytosine/adenosine deaminase [Photobacterium sp. SKA34]
          Length = 175

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 17/133 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           M V   D  FM  A+  +            V  ++V +G V+G G    +  +    HAE
Sbjct: 4   MQVEQNDEHFMRRAIELAA--KAEEEGEVPVGAVVVYNGRVVGEGWNRSIGQHDATAHAE 61

Query: 57  VQALEEAG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL +AG   E  R    T YVTLEPC      P CA  ++ C + +VV   DD     
Sbjct: 62  IMALRQAGKVLENYRLIDTTLYVTLEPC------PMCAGAMVHCRVGKVVYGADDLKTGA 115

Query: 112 SGRGLQWLSQKGI 124
           +G  +  LS  G+
Sbjct: 116 AGSTMNLLSYDGV 128


>gi|32455577|ref|NP_862060.1| putative deaminase [Streptomyces lividans]
 gi|28883228|gb|AAO61161.1| putative deaminase [Streptomyces lividans]
 gi|89357155|gb|ABD72321.1| pQC542.17 [Streptomyces lividans]
          Length = 155

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 66/123 (53%), Gaps = 9/123 (7%)

Query: 32  ACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEAGEEA---RGATAYVTLEPCSHYGRSP- 86
           A ++ +DG  +  G + A G   HAE  AL +  ++     GAT Y TLEPCS   RSP 
Sbjct: 34  AVIVSEDGTELATGYSRATGPHEHAEEVALAQLPQDDPRLAGATIYSTLEPCSQR-RSPR 92

Query: 87  -PCAQFIIECGIRRVVVCVDDPDVRVSG-RGLQWLSQKGIIVDRMME-SEGKIFLHAYLT 143
            PCAQ ++  GI RVV+   +P + V    G + L Q G+ V  + E +E    ++++L 
Sbjct: 93  TPCAQRVLAAGIPRVVIAWREPSLFVDDCVGYEQLIQAGVTVVELPELAEAARAVNSHLG 152

Query: 144 RQV 146
           R V
Sbjct: 153 RLV 155


>gi|127512238|ref|YP_001093435.1| CMP/dCMP deaminase, zinc-binding [Shewanella loihica PV-4]
 gi|126637533|gb|ABO23176.1| CMP/dCMP deaminase, zinc-binding [Shewanella loihica PV-4]
          Length = 273

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 56/121 (46%), Gaps = 9/121 (7%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           A +M  A+   R   G     P V  +IV  G  +  G    G   HAE  A+EEA E+ 
Sbjct: 7   ALYMKQAVDQMRMSEG---KGPKVGAVIVTKGHQVIAGHKKNG--THAERAAIEEAQEKK 61

Query: 68  ---RGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
              RGAT Y TLEPC   G +   C+  I   GI+ V +   DP+  +   G + L  +G
Sbjct: 62  IDLRGATLYSTLEPCVSVGSKKEACSDLISRVGIKTVYIGRYDPNPNIQRLGWKKLRDEG 121

Query: 124 I 124
           I
Sbjct: 122 I 122


>gi|256832227|ref|YP_003160954.1| CMP/dCMP deaminase zinc-binding [Jonesia denitrificans DSM 20603]
 gi|256685758|gb|ACV08651.1| CMP/dCMP deaminase zinc-binding [Jonesia denitrificans DSM 20603]
          Length = 283

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 4/104 (3%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSH 81
           +S N  V  +I +   V+  G  +     HAE  AL +A   G + +GAT Y T+EPC++
Sbjct: 23  SSDNARVGAVIARGETVLATGYKSEIDKLHAEQIALHKAEMQGVDVKGATLYTTMEPCAN 82

Query: 82  YGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
              S  PCA+ + E GI  V +   DP+ +V   G + L  +GI
Sbjct: 83  SRTSRVPCAELVAEAGIVEVHIGEYDPNPQVYRLGWKHLRDRGI 126


>gi|219852683|ref|YP_002467115.1| bifunctional deaminase-reductase domain protein [Methanosphaerula
           palustris E1-9c]
 gi|219546942|gb|ACL17392.1| bifunctional deaminase-reductase domain protein [Methanosphaerula
           palustris E1-9c]
          Length = 234

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 100/218 (45%), Gaps = 15/218 (6%)

Query: 149 RSHITLKIAVSQDNMIGMA-GCGSVPITGFISKNQ---VHLLRAQSDAILVGIGTVLADD 204
           R H+ L   ++ D  + +  G  S  +  +++      +H  RA  DAI+VG  T+  D+
Sbjct: 7   RPHVLLMSEITADGKLTLKKGSSSKILMKYMAPETEVLLHQTRAACDAIMVGSNTIRIDN 66

Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
             LT R+  +   SP+R+I      + LD+ ++       V + T   +  +A A R K 
Sbjct: 67  SFLTVRI--VPGESPLRVIPSSQADIPLDANVLGPDARTLVAVATSAPEEKIA-AIRAKG 123

Query: 265 INIIYC--DCRDLKKLLTILV-GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
             ++    D  DL  L+ +L     V  L++EGG  +    +  +LVD I L     ++G
Sbjct: 124 AMVVVAGDDHVDLSTLMHLLWRDFHVRRLMIEGGPTLNWHMLIHQLVDEIRLIHLPFIVG 183

Query: 322 EGGIPSPLEEGYLEKNFMCVR---RDYF--GSDVCLEY 354
               PS +   +++     +R   ++++  G+++  EY
Sbjct: 184 GADTPSLVGGMHIDSEDQMIRLQLKNHYLCGTNLVTEY 221


>gi|20806575|ref|NP_621746.1| cytosine/adenosine deaminase [Thermoanaerobacter tengcongensis MB4]
 gi|20515016|gb|AAM23350.1| Cytosine/adenosine deaminases [Thermoanaerobacter tengcongensis
           MB4]
          Length = 148

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA- 63
           +FM  AL+ ++    L      V  +IVKDG +I RG     ++     HAE+ A+ EA 
Sbjct: 4   KFMEEALKEAKKSYELGEV--PVGAVIVKDGEIIARGHNQKESSKDATAHAEIIAIREAC 61

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                      + YVTLEPC      P CA  I+E  I+RV +  + P    +G  +  L
Sbjct: 62  RRLGSWRLEDCSLYVTLEPC------PMCAGAIVEARIKRVYIGTESPKEGAAGSVINIL 115

Query: 120 SQKGI-----IVDRMMESEGKIFLHAYL 142
           + K +     +   +ME E K  L  + 
Sbjct: 116 NNKELGTSTEVYFGIMEEEAKELLKKFF 143


>gi|120437804|ref|YP_863490.1| cytidine/deoxycytidylate deaminase family protein [Gramella
           forsetii KT0803]
 gi|117579954|emb|CAL68423.1| cytidine/deoxycytidylate deaminase family protein [Gramella
           forsetii KT0803]
          Length = 143

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 36/148 (24%)

Query: 9   RFMSAALRFSRWHVGLTSTN-PSVACLIVKDGIVIGRGVTAYGGCP-------------- 53
           +F  A LR +R    L+  N   V  LIVKD ++I  G   Y G P              
Sbjct: 8   KFDKAYLRIAREWSKLSHCNRKQVGALIVKDRMIISDG---YNGTPTGFENFCEDEEGYT 64

Query: 54  -----HAEVQA-LEEAG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE  A L+ AG  +  + AT Y+T+ PC        C++ I + GI R+V  +D
Sbjct: 65  KWYVLHAEANAILKVAGSTQSCKDATLYITMSPC------KECSKLIHQSGISRLVFQID 118

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESE 133
             D      GL++L + G+ ++++ E E
Sbjct: 119 YKD----NSGLEFLKKAGVELEQITELE 142


>gi|330808801|ref|YP_004353263.1| hypothetical protein PSEBR_a2016 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376909|gb|AEA68259.1| conserved hypothetical protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 243

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 17/160 (10%)

Query: 187 RAQSDAILVGIGTVLADD------PELTCRLNGLQEHS-------PMRIILDPHFKLSLD 233
           R   D  ++G  T+ A D      P +     GL++H+       P+ I++DP  KL   
Sbjct: 44  RLGGDGFIIGRKTMEAFDGISSRPPFVGEHSGGLRDHNIAHEPGDPVAIVIDPSGKLHYQ 103

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGR-GVTSL 290
           +  I        I+     D  L  A R + I+ ++    C +LK+ L +L  R G+ +L
Sbjct: 104 TNTIDGGHRIISILGDSVSDAYLQ-ALRNQGISYLFAGPHCENLKQALAMLGARFGLKTL 162

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           L+EGG  +  +F+ + L+D I L     + G  G+PS  E
Sbjct: 163 LLEGGGVINGTFLKAGLIDEISLLIYPGIDGLSGVPSIFE 202


>gi|332796444|ref|YP_004457944.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
           pyrimidine1-reductase [Acidianus hospitalis W1]
 gi|332694179|gb|AEE93646.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
           pyrimidine1-reductase [Acidianus hospitalis W1]
          Length = 216

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 4/155 (2%)

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H+LR++ DAI++G  TV  D+P LT +   +   +P+R+I+       ++ KI  T    
Sbjct: 34  HILRSEVDAIMIGGNTVRIDNPSLTLKY--VHGKNPIRVIISNSLNFDINYKIFNTPPQT 91

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSF 302
            +     +++       ++K + I   D  ++  ++  L     V  +++EGG  +  S 
Sbjct: 92  IIYTSNNSENKDFENKIKEKGVIIRKLDNFNICNVMNDLESNFNVHKVMIEGGGKLIWSV 151

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
           I     D + +  S  V G  G+     EG+L KN
Sbjct: 152 IKENCFDELRVTISPRVFG-NGVSLANGEGFLGKN 185


>gi|328767668|gb|EGF77717.1| hypothetical protein BATDEDRAFT_5464 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 185

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 21/187 (11%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
           ITL  A + D  I + G   + I+   S    H LRA  DAILVG+ T++ D+P L+ R 
Sbjct: 3   ITLTYAQTFDGFIALPG-QQLAISSPQSMVLTHALRATHDAILVGVQTIICDNPSLSTRF 61

Query: 212 NGL--------QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND-------DPVL 256
                          P  +ILD H +  L++K++      P I  T          D ++
Sbjct: 62  VDYGPPPDRITPPSQPRPVILDSHLRCPLNAKVLSR---NPFIFTTTTPSTHSNSWDALI 118

Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL--VDSIILY 314
               +   IN       D+   L  L    + S+++EGG+ V    +++ +  + S+I+ 
Sbjct: 119 QAGAQPITINSDSTHRVDIVSALEYLHSHNIHSVMIEGGSQVIKECLSNPMLPIHSLIVT 178

Query: 315 RSQIVIG 321
            S + +G
Sbjct: 179 VSPMFLG 185


>gi|330504655|ref|YP_004381524.1| CMP/dCMP deaminase, zinc-binding protein [Pseudomonas mendocina
           NK-01]
 gi|328918941|gb|AEB59772.1| CMP/dCMP deaminase, zinc-binding protein [Pseudomonas mendocina
           NK-01]
          Length = 158

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 64/143 (44%), Gaps = 26/143 (18%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------HAE 56
           S D  FM  AL  +R   G       V  ++V+DG V+G+G      CP        HAE
Sbjct: 10  SRDEHFMRLALAQARLGAGQGEV--PVGAVLVQDGEVVGQGFN----CPILRHDPSAHAE 63

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+  A +  +     G+T YVTLEPCS       CA  I+   I RVV    +P   V
Sbjct: 64  MVAIRAAAQSVQNYRLPGSTLYVTLEPCSM------CAGLIVHARIARVVFAASEPRAGV 117

Query: 112 SGRGLQWLSQKGIIVDRMMESEG 134
           +    Q+  Q G +  R++   G
Sbjct: 118 AISQGQFFDQ-GFLNHRVLVEGG 139


>gi|90579814|ref|ZP_01235622.1| Putative cytosine/adenosine deaminase [Vibrio angustum S14]
 gi|90438699|gb|EAS63882.1| Putative cytosine/adenosine deaminase [Vibrio angustum S14]
          Length = 175

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 17/133 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           M V   D  FM  A+  +            V  ++V +G V+G G    +  +    HAE
Sbjct: 4   MEVEPNDEYFMRRAIELAA--KAEEEGEVPVGAVVVYNGQVVGEGWNRSIGQHDATAHAE 61

Query: 57  VQALEEAG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL +AG   E  R    T YVTLEPC      P CA  ++ C + +VV   DD     
Sbjct: 62  IMALRQAGKVLENYRLIDTTLYVTLEPC------PMCAGAMVHCRVGKVVYGADDLKTGA 115

Query: 112 SGRGLQWLSQKGI 124
           +G  +  LS  G+
Sbjct: 116 AGSTMNLLSYDGV 128


>gi|91225086|ref|ZP_01260308.1| YfhC protein [Vibrio alginolyticus 12G01]
 gi|91190029|gb|EAS76300.1| YfhC protein [Vibrio alginolyticus 12G01]
          Length = 169

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 29/159 (18%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++VKDG +I  G    +  +    HAE+Q L +AG++         T YVTLEPC  
Sbjct: 19  VGAVLVKDGEIIAEGRNRSIGTHDATAHAEIQTLRKAGQKLENYRLLDTTLYVTLEPC-- 76

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-------QWLSQKGIIVDRMMESEG 134
               P CA  ++   ++RVV     PD++    G        Q      ++   ++E E 
Sbjct: 77  ----PMCAGALLHSRVKRVVFGA--PDLKAGAAGTVLNLFESQAAYHYALVEKGLLEDEC 130

Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQ--DNMIGMAGCGS 171
           +  L A+  R   +R  I  K    +  +N     G GS
Sbjct: 131 RTQLQAFFKR---RRKEIKAKKQAQKALENRESEQGSGS 166


>gi|224824536|ref|ZP_03697643.1| CMP/dCMP deaminase zinc-binding [Lutiella nitroferrum 2002]
 gi|224603029|gb|EEG09205.1| CMP/dCMP deaminase zinc-binding [Lutiella nitroferrum 2002]
          Length = 242

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 17/125 (13%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64
           RFM+ A+R ++           V  ++VK+G +IGRG    VT++    HAE+ AL EA 
Sbjct: 96  RFMAEAIRLAK--AAAAEGEVPVGAVVVKEGRIIGRGFNRPVTSHDPSAHAEMVALREAA 153

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                    G   YVTLEPC      P C   I+   + RV+    DP +  +G  L   
Sbjct: 154 ATLGNYRLSGCDLYVTLEPC------PMCGGAILHSRLDRVIYGARDPKIGAAGSVLNLF 207

Query: 120 SQKGI 124
            ++ +
Sbjct: 208 GERAL 212


>gi|118431394|ref|NP_147843.2| pyrimidine nucleotide reductase [Aeropyrum pernix K1]
 gi|116062718|dbj|BAA80270.2| pyrimidine nucleotide reductase [Aeropyrum pernix K1]
          Length = 220

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 8/143 (5%)

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  RA +DA++VG  T + D P LT RL   +  SP+R+++D   K+  D   ++     
Sbjct: 37  HKYRASADAVMVGSRTAVLDRPRLTVRLA--RGRSPLRVVVDSGLKVPPDVAGLRR---G 91

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGR-GVTSLLVEGGAAVAH 300
            V++  E         + ++ + ++       DL++ + +L  R GV  L+VEGG  +  
Sbjct: 92  SVLVTAEGHSRERLKPYLERGVEVVEAGRGKVDLERAVAVLRERLGVRVLMVEGGGGLNC 151

Query: 301 SFINSRLVDSIILYRSQIVIGEG 323
           + +   LVD +    +  + G G
Sbjct: 152 AMLEKGLVDEVRATIAPYIFGGG 174


>gi|303320905|ref|XP_003070447.1| Cytidine and deoxycytidylate deaminase zinc-binding domain
           containing protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240110143|gb|EER28302.1| Cytidine and deoxycytidylate deaminase zinc-binding domain
           containing protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320033053|gb|EFW15002.1| tRNA-specific adenosine deaminase subunit TAD2 [Coccidioides
           posadasii str. Silveira]
          Length = 207

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 71/157 (45%), Gaps = 28/157 (17%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAG 64
           +FM  AL+ +   + +  T   V C++V DG VIGRG+     +  G  HAE  A+EEA 
Sbjct: 30  QFMREALQMAEQALAIGET--PVGCVLVHDGKVIGRGMNDTNRSLNGTRHAEFLAIEEAL 87

Query: 65  EEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV-CVDDPDVRVSGRG--L 116
                   R    YVT+EPC        CA  + +  IRRV   CV+D   R  G G  L
Sbjct: 88  RSYPRSIFRTTDLYVTVEPCIM------CASLLRQNYIRRVFFGCVND---RFGGTGGVL 138

Query: 117 QWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEK 148
              S + I     +   +  +E  + L  +  ++ EK
Sbjct: 139 NLHSDRAIDPPYTVYGGIFRNEAIMLLRRFYIQENEK 175


>gi|146308436|ref|YP_001188901.1| CMP/dCMP deaminase, zinc-binding [Pseudomonas mendocina ymp]
 gi|145576637|gb|ABP86169.1| CMP/dCMP deaminase, zinc-binding protein [Pseudomonas mendocina
           ymp]
          Length = 158

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 65/143 (45%), Gaps = 26/143 (18%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------HAE 56
           S D  FM  AL  +R  +G       V  ++V+DG V+G+G      CP        HAE
Sbjct: 10  SRDEHFMRLALVQAR--LGAEQGEVPVGAVLVQDGEVVGQGFN----CPILRHDPSAHAE 63

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+  A +  +     G+T YVTLEPCS       CA  I+   I RVV    +P   V
Sbjct: 64  MVAIRAAAQSVQNYRLPGSTLYVTLEPCSM------CAGLIVHARIARVVYAASEPRAGV 117

Query: 112 SGRGLQWLSQKGIIVDRMMESEG 134
           +    Q+  Q G +  R++   G
Sbjct: 118 AISQGQFFDQ-GFLNHRVLVEGG 139


>gi|253996102|ref|YP_003048166.1| CMP/dCMP deaminase zinc-binding [Methylotenera mobilis JLW8]
 gi|253982781|gb|ACT47639.1| CMP/dCMP deaminase zinc-binding [Methylotenera mobilis JLW8]
          Length = 165

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 25/163 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM+ AL  ++    L    P V  ++VKDG++IGRG    +T +    HAE+QA+ +
Sbjct: 12  DQAFMNIALTLAK-QAALAGEVP-VGAIVVKDGVIIGRGSNAPITLHDPSAHAEIQAMRD 69

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR--- 114
           A +          T YVTLEPC+       CA  I    I ++V    D      G    
Sbjct: 70  AAQHLGNYRLVDCTLYVTLEPCA------MCAGAIQHARIAKLVYGASDQKTGACGSVVN 123

Query: 115 --GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
               Q L+    +   ++  E  + L ++ +   E+R    L+
Sbjct: 124 LMAEQKLNHHTTVASGLLADECGMMLSSFFS---ERRKQAKLR 163


>gi|257458848|ref|ZP_05623971.1| riboflavin biosynthesis protein RibD [Campylobacter gracilis
           RM3268]
 gi|257443836|gb|EEV18956.1| riboflavin biosynthesis protein RibD [Campylobacter gracilis
           RM3268]
          Length = 147

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 12/143 (8%)

Query: 72  AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV--DRM 129
           +Y   EPC+H GR+P CA+ + + G+ RVV+   D + + +G G + L   GI V  D  
Sbjct: 3   SYAAFEPCAHRGRTPSCAELLAQLGLSRVVIGTRDTNAQAAG-GAEILLCGGIEVKFDVC 61

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
             +  ++    YL R+        +KI V+ +  +     GS     F     VH LR  
Sbjct: 62  HAAAEELAEPFYLARE---GGFCFIKINVALNGAV-HGRIGSEKQRAF-----VHELRGV 112

Query: 190 SDAILVGIGTVLADDPELTCRLN 212
            D + VG  TV AD P    + N
Sbjct: 113 CDYVGVGGQTVRADRPNWMLQPN 135


>gi|169830233|ref|YP_001716215.1| CMP/dCMP deaminase [Candidatus Desulforudis audaxviator MP104C]
 gi|169637077|gb|ACA58583.1| CMP/dCMP deaminase, zinc-binding [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 156

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 17/130 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           +P  +  A +M  ALR +            V  ++V+DG +IGRG            HAE
Sbjct: 4   VPDLAVHAGYMREALREA--EKAYAKGEVPVGAVVVQDGTIIGRGHNLREADNDASAHAE 61

Query: 57  VQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ +A + +      GAT YVT+EPC      P CA  +++  +RRVV    DP    
Sbjct: 62  LLAMRQAAQVSGDWRLSGATVYVTMEPC------PMCAGALVQFRVRRVVYGTADPKAGA 115

Query: 112 SGRGLQWLSQ 121
           +G  ++ L +
Sbjct: 116 AGSVVELLRE 125


>gi|311898175|dbj|BAJ30583.1| putative diaminohydroxyphosphoribosylamino- pyrimidine deaminase
           [Kitasatospora setae KM-6054]
          Length = 153

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 69/146 (47%), Gaps = 9/146 (6%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRG----VTAYGGCPHAEVQA 59
           + D R+M  A+  S+     + T  SV  +IV  DG V+  G    V A      A +  
Sbjct: 7   AADLRWMRRAIELSK-RCPPSRTAFSVGAVIVGADGEVLAEGHSREVDAVNHAEEAALGK 65

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSG-RGLQ 117
           L       R AT Y TLEPC      P PCA+ I+  G+ RVVV   +P + V+  +G  
Sbjct: 66  LPAGDPRLRAATVYSTLEPCGQRASRPHPCAELIVAAGVPRVVVAWREPSLFVAACQGTA 125

Query: 118 WLSQKGIIVDRMME-SEGKIFLHAYL 142
            L+  G+ V  + E +E    ++A+L
Sbjct: 126 LLTAAGVEVIELPELAEEARAVNAHL 151


>gi|119179553|ref|XP_001241350.1| hypothetical protein CIMG_08513 [Coccidioides immitis RS]
          Length = 230

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 56/117 (47%), Gaps = 21/117 (17%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAG 64
           +FM  AL+ +   + +  T   V C++V DG VIGRG+     +  G  HAE  A+EEA 
Sbjct: 53  QFMREALQMAEQALAIGET--PVGCVLVHDGKVIGRGMNDTNRSLNGTRHAEFLAIEEAL 110

Query: 65  EEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV-CVDDPDVRVSGRG 115
                   R    YVT+EPC        CA  + +  IRRV   CV+D   R  G G
Sbjct: 111 RSYPRSIFRTTDLYVTVEPCIM------CASLLRQNYIRRVFFGCVND---RFGGTG 158


>gi|304405747|ref|ZP_07387405.1| CMP/dCMP deaminase zinc-binding [Paenibacillus curdlanolyticus YK9]
 gi|304344990|gb|EFM10826.1| CMP/dCMP deaminase zinc-binding [Paenibacillus curdlanolyticus YK9]
          Length = 148

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 15/100 (15%)

Query: 31  VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           +  +IV++G VIGRG     T +    HAE+ A+ EA +         +T YVTLEPC  
Sbjct: 19  IGAVIVRNGEVIGRGYNLRETDHDATAHAEIIAIREASKHIEAWRLLDSTLYVTLEPC-- 76

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
               P CA  I++  ++RVV    DP    +G  +  L +
Sbjct: 77  ----PMCAGAIVQSRVKRVVYGTHDPKAGCAGTLMNLLQE 112


>gi|62327216|ref|YP_223954.1| deoxycytidylate deaminase [Phage phiJL001]
 gi|50059534|gb|AAT69506.1| deoxycytidylate deaminase [Phage phiJL001]
          Length = 244

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 55/123 (44%), Gaps = 33/123 (26%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP----------- 53
           A++    L+ + +   L S +PS    A ++ +D  V+G G   Y G P           
Sbjct: 104 AKWDRDYLKLAEFWANLKSKDPSTKVGAVVVSEDNRVVGMG---YNGFPVGVEDSRERLE 160

Query: 54  ----------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                     HAE  A+  AG +A+G T Y TL PC+       CA+ II+ GIRRVV  
Sbjct: 161 DRPTKYMYVVHAEPNAILTAGLQAKGGTLYCTLFPCNE------CAKLIIQSGIRRVVSW 214

Query: 104 VDD 106
             D
Sbjct: 215 ASD 217


>gi|254389245|ref|ZP_05004474.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|326444933|ref|ZP_08219667.1| putative riboflavin-specific deaminase/reductase [Streptomyces
           clavuligerus ATCC 27064]
 gi|197702961|gb|EDY48773.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 227

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 8/184 (4%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R ++ L  A++ D  +  A    + ++     ++V  +RAQSDAIL+G  TV  D+P L 
Sbjct: 4   RPYVVLSAAMTVDGYLDDASPERLLLSNAADFDRVDQVRAQSDAILIGATTVRKDNPRLL 63

Query: 209 C--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
                    R+   +   P+++ +     LS D           VI V +  + V     
Sbjct: 64  VNSDERRAKRVADGKSAYPLKVTVTRTGDLSADLNFWHHGGKKLVITVDDAVEKVRTTLG 123

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
              ++  +  D RD   +L  L  R V  L+VEGG  +    + + L D + L  + +++
Sbjct: 124 DLADVVSVGPDLRDWGLVLDELGRRNVGQLMVEGGGTIHTQLMAADLADEVHLAIAPLLV 183

Query: 321 GEGG 324
           G+ G
Sbjct: 184 GQPG 187


>gi|326796823|ref|YP_004314643.1| CMP/dCMP deaminase zinc-binding protein [Marinomonas mediterranea
           MMB-1]
 gi|326547587|gb|ADZ92807.1| CMP/dCMP deaminase zinc-binding protein [Marinomonas mediterranea
           MMB-1]
          Length = 159

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 33/126 (26%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           V  ++V++  +IGRG    +T      HAE+QA+ +A          GAT YVTLEPCS 
Sbjct: 25  VGAIVVQNDEIIGRGFNRPITTCDPTAHAEIQAIRDACANVNNYRLPGATLYVTLEPCSM 84

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
                 CA  I+   I +VV    +P   V+                  ES+G+ F  A+
Sbjct: 85  ------CAGAIVHARIEKVVYGATEPKSGVT------------------ESQGRFFEQAF 120

Query: 142 LTRQVE 147
           L  +VE
Sbjct: 121 LNHKVE 126


>gi|315230916|ref|YP_004071352.1| carbon monoxide dehydrogenase CooS-like protein subunit
           [Thermococcus barophilus MP]
 gi|315183944|gb|ADT84129.1| carbon monoxide dehydrogenase CooS-like protein subunit
           [Thermococcus barophilus MP]
          Length = 633

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 9/153 (5%)

Query: 15  LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEV--QALEEAGEEARGATA 72
           ++ +  HV LT        LI +D +V+G G        H  +  +A + AGE  R    
Sbjct: 457 VKHNHSHVTLTKE------LIKRDILVVGTGCWGIAAAMHGLLTPEAAKMAGEGLRAVCE 510

Query: 73  YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
            + + PC H G    C++ +I  G     + VD PD+ V+G   +W+S+K + +     +
Sbjct: 511 TLGIPPCLHMGSCVDCSRILIVLGALAEALGVDIPDLPVAGSAPEWMSEKAVSIGTYFVA 570

Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG 165
            G +F H  +   V     +T  +    ++++G
Sbjct: 571 SG-VFTHLGVVPPVLGSQKVTRLLTDEIEDLLG 602


>gi|269962366|ref|ZP_06176716.1| zinc-binding domain protein [Vibrio harveyi 1DA3]
 gi|269832862|gb|EEZ86971.1| zinc-binding domain protein [Vibrio harveyi 1DA3]
          Length = 164

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 27/148 (18%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++VKDG ++  G    + A+    HAE+Q L +AGE          T YVTLEPC  
Sbjct: 19  VGAVLVKDGEIVAEGWNRSICAHDATAHAEIQTLRKAGEALENYRLLDTTLYVTLEPC-- 76

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-------QWLSQKGIIVDRMMESEG 134
               P CA  ++   ++RVV     PD++    G        Q       +   ++E E 
Sbjct: 77  ----PMCAGALLHSRVKRVVYGA--PDLKAGAAGTVLNLFKSQAAYHYATVESGLLEDEC 130

Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           +  L A+  R   +R  I  K    + N
Sbjct: 131 RSQLQAFFKR---RRKEIKAKKQAQRAN 155


>gi|325921804|ref|ZP_08183621.1| tRNA-adenosine deaminase [Xanthomonas gardneri ATCC 19865]
 gi|325547681|gb|EGD18718.1| tRNA-adenosine deaminase [Xanthomonas gardneri ATCC 19865]
          Length = 165

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 15/119 (12%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59
           S  D ++M  AL+ +          P  A L+  DG V+G G    + ++    HAE+ A
Sbjct: 8   SPIDQQWMQRALQLAERAERDYDEIPVGALLVDADGNVLGEGWNFNIASHDPTAHAEIMA 67

Query: 60  LEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           + EAG         G T YVTLEPC+       CA  +I   I RVV    DP     G
Sbjct: 68  MREAGRRLANHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGACG 120


>gi|156973452|ref|YP_001444359.1| hypothetical protein VIBHAR_01142 [Vibrio harveyi ATCC BAA-1116]
 gi|156525046|gb|ABU70132.1| hypothetical protein VIBHAR_01142 [Vibrio harveyi ATCC BAA-1116]
          Length = 164

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 64/142 (45%), Gaps = 29/142 (20%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG------ATAYVTLEPCS 80
           V  ++VKDG +I  G    + A+    HAE+Q L +AG EA G       T YVTLEPC 
Sbjct: 19  VGAVLVKDGEIIAEGWNRSICAHDATAHAEIQTLRKAG-EALGNYRLLDTTLYVTLEPC- 76

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-------QWLSQKGIIVDRMMESE 133
                P CA  ++   ++RVV     PD++    G        Q       + + ++E E
Sbjct: 77  -----PMCAGALLHSRVKRVVYGA--PDLKAGAAGTVLNLFESQAAYHYATVENGLLEEE 129

Query: 134 GKIFLHAYLTRQVEKRSHITLK 155
            +  L A+  R   +R  I  K
Sbjct: 130 CRSQLQAFFKR---RRKEIKAK 148


>gi|262384379|ref|ZP_06077514.1| deoxycytidylate deaminase [Bacteroides sp. 2_1_33B]
 gi|262294082|gb|EEY82015.1| deoxycytidylate deaminase [Bacteroides sp. 2_1_33B]
          Length = 144

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 62/144 (43%), Gaps = 38/144 (26%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
            D R++  A   + W          V  L+VKD ++I  G   Y G P            
Sbjct: 11  LDKRYLRMA---AIWAENSYCKRRQVGALLVKDKMIISDG---YNGTPAGFENVCEDENN 64

Query: 54  -------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A+ +   +   ++GAT YVT  PC        CA+ II+ GI+RVV  
Sbjct: 65  VTKPYVLHAEANAITKVAASSNSSKGATIYVTSSPCIE------CAKLIIQSGIKRVVY- 117

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD 127
               D R++  G + L + GIIVD
Sbjct: 118 --SEDYRIAD-GCELLKRAGIIVD 138


>gi|145595083|ref|YP_001159380.1| deaminase-reductase domain-containing protein [Salinispora tropica
           CNB-440]
 gi|145304420|gb|ABP55002.1| bifunctional deaminase-reductase domain protein [Salinispora
           tropica CNB-440]
          Length = 229

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 14/198 (7%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           + +R ++ L  A S D  I  A    + ++     +++  +RA  DAILVG GTV  DDP
Sbjct: 1   MTERPYVLLSCATSLDGYIDDATGQRLLLSNDADLDRIDEVRAGCDAILVGAGTVRRDDP 60

Query: 206 EL---------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
            L              GL   SP R+ +     L   +++  T   A +I    +   V 
Sbjct: 61  RLLVRSAARRAERVARGLAA-SPTRVTVTGCGDLDPGARVFTTGATARLIYCATSG--VE 117

Query: 257 ALAFRKKNINIIY--CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
            +  R  +I  +    +  DL  +L  L  RG+  LLVEGGA++   F+ S L D + L 
Sbjct: 118 KVRERLGDIATVVHSGEPVDLAAVLADLAARGIGRLLVEGGASMHTQFLASGLADELHLV 177

Query: 315 RSQIVIGEGGIPSPLEEG 332
            +   +G+G  P  + +G
Sbjct: 178 VAPFFVGDGRAPRFVRDG 195


>gi|77166061|ref|YP_344586.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Nitrosococcus oceani ATCC 19707]
 gi|254436457|ref|ZP_05049961.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Nitrosococcus oceani AFC27]
 gi|76884375|gb|ABA59056.1| tRNA-adenosine deaminase [Nitrosococcus oceani ATCC 19707]
 gi|207087927|gb|EDZ65202.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Nitrosococcus oceani AFC27]
          Length = 155

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 69/145 (47%), Gaps = 19/145 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57
           P    D  +M  AL  +R+     +    V  ++V++G ++G+G    + ++    HAE+
Sbjct: 5   PPGEKDIPWMHHALALARY--AEEAGEVPVGAVVVQEGEMVGKGWNCPINSHDPTAHAEI 62

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           QA+  A ++       G T YVTLEPC+       CA  II+  I+RVV    DP    +
Sbjct: 63  QAIRAASQKLGNYRLVGTTLYVTLEPCAM------CAGAIIQARIQRVVFGAFDPKGGAA 116

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIF 137
           G  L  L   G  ++  +E +G + 
Sbjct: 117 GSALNIL--PGERLNHQVECQGGVL 139


>gi|187735588|ref|YP_001877700.1| CMP/dCMP deaminase zinc-binding [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425640|gb|ACD04919.1| CMP/dCMP deaminase zinc-binding [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 181

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 52/122 (42%), Gaps = 17/122 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M +   D  FM  A++ SR    L      V  ++VKDG VIGRG     T      HAE
Sbjct: 7   MEMPGSDEWFMRQAMKESR--KALVKGEVPVGAIVVKDGRVIGRGWNQVETLKDATAHAE 64

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL  A E        G T YVT EPC      P CA  I+ C   RVV    D     
Sbjct: 65  MIALTAAQEALGDWRLEGCTLYVTKEPC------PMCAGAIVHCRPDRVVFGCPDAKTGA 118

Query: 112 SG 113
           +G
Sbjct: 119 AG 120


>gi|217031852|ref|ZP_03437355.1| hypothetical protein HPB128_199g60 [Helicobacter pylori B128]
 gi|216946504|gb|EEC25106.1| hypothetical protein HPB128_199g60 [Helicobacter pylori B128]
          Length = 276

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 111/255 (43%), Gaps = 47/255 (18%)

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
           +TLEPC+ YG++P C++ +     +RVV+  ++ + +  G      ++   I+   +E++
Sbjct: 33  ITLEPCNSYGKTPACSELLEILKPKRVVIAAEENEAKKGGLARLQKARIETIICHNLENK 92

Query: 134 GKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
            K  L  +  R +E++    L K+A+    M G    G   ITG  S    H  RA  + 
Sbjct: 93  AKDLLLPF--RIMEQKGRFNLFKLALR---MNGDYHHGK--ITGQKSVIFTHNQRAICNT 145

Query: 193 ILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLD--SKIIKTALLAPVIIV 248
           +++   T+  D+P L  R   +  Q  +P   IL    K S+D  SK+      AP  +V
Sbjct: 146 LIISGKTIRTDNPLLDARFCDHFYQNKNPNIAILS---KRSIDPNSKVFS----APNRLV 198

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
               DP                  +DL       + +G     +EGG  +  S  N   +
Sbjct: 199 NTFHDP------------------KDLP------LEKGFN--FIEGGWELFESLRNK--I 230

Query: 309 DSIILYRSQIVIGEG 323
           D+++L+    +IGE 
Sbjct: 231 DALLLHSHASMIGEA 245


>gi|297582358|ref|YP_003698138.1| CMP/dCMP deaminase zinc-binding protein [Bacillus selenitireducens
           MLS10]
 gi|297140815|gb|ADH97572.1| CMP/dCMP deaminase zinc-binding protein [Bacillus selenitireducens
           MLS10]
          Length = 174

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 43/86 (50%), Gaps = 15/86 (17%)

Query: 31  VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           +  +IVKD I+I RG     T      HAE+ A+EEA          G T YVTLEPC  
Sbjct: 31  IGAVIVKDDIIIARGYNERETKQRATGHAELVAIEEACRILKTWRLEGCTLYVTLEPC-- 88

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDP 107
               P CA  I++  I RVV   DDP
Sbjct: 89  ----PMCAGAIVQSRIDRVVYGADDP 110


>gi|27363814|ref|NP_759342.1| tRNA-specific adenosine-34 deaminase [Vibrio vulnificus CMCP6]
 gi|27359931|gb|AAO08869.1| tRNA-specific adenosine-34 deaminase [Vibrio vulnificus CMCP6]
          Length = 181

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 22/159 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
            P S  D  FM  A+  +   +  +     V  ++VKDG VI  G    +  +    HAE
Sbjct: 6   QPFSLQDEVFMRRAIELAA--IAESEGEVPVGAVLVKDGEVIAEGWNQSIGQHDATAHAE 63

Query: 57  VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +Q L +AG+          T YVTLEPC      P CA  ++   ++R+V    D     
Sbjct: 64  IQTLRQAGQSLGNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVFGAPDLKAGA 117

Query: 112 SGRGLQWLSQK-----GIIVDRMMESEGKIFLHAYLTRQ 145
           +G  L   S +       I   ++E E +  L A+  R+
Sbjct: 118 AGTVLDLFSSQAAYHYATIEKGLLELECREQLQAFFKRR 156


>gi|311898176|dbj|BAJ30584.1| putative 5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Kitasatospora setae KM-6054]
          Length = 231

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 76/187 (40%), Gaps = 9/187 (4%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL- 207
           R H+ L  AVS D  +  A    + ++     ++V  LRA SDAILVG GT+ AD+P L 
Sbjct: 3   RPHVLLSAAVSIDGHLDDASPERLLLSNAADFDRVDALRADSDAILVGGGTLRADNPRLL 62

Query: 208 -------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
                    R        P+++ L    +L    +   T               + A   
Sbjct: 63  VNSPERRAARTAAGLPAYPLKVTLSASGRLDPALRFWHTGGAKLAYTTDATAPALAAALA 122

Query: 261 RKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
                 ++       L  +L  L  RGV  L+VEGG +V   F+   L D + L  + ++
Sbjct: 123 GAPGTEVVGLGAAVPLGAVLDDLGARGVRRLMVEGGGSVHTRFLAEGLADELQLAVAPLL 182

Query: 320 IGEGGIP 326
           +G+   P
Sbjct: 183 VGQADAP 189


>gi|223935243|ref|ZP_03627161.1| bifunctional deaminase-reductase domain protein [bacterium
           Ellin514]
 gi|223896127|gb|EEF62570.1| bifunctional deaminase-reductase domain protein [bacterium
           Ellin514]
          Length = 244

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 82/189 (43%), Gaps = 15/189 (7%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV------LADDP 205
           + L IA + D  +  A    VP       + +  LR ++DA++ G  TV      +   P
Sbjct: 16  VYLNIATTADGKLAPANRKFVPFGSKRDHDHLLELRTEADAVMSGARTVDLFPVNMGPGP 75

Query: 206 ELTCRL---NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA-FR 261
               R+   NGL E++ +RI++     L   S+I K    +P+II+T    P   L   R
Sbjct: 76  AKYRRMRLKNGLAEYN-LRIVVSGSGSLDPRSEIFKHRF-SPIIILTSERAPESRLKKLR 133

Query: 262 KKNINIIYCDCR--DLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
                ++ C  +  D K  L+ L  +  VT LL EGG  V  +   + LVD I L     
Sbjct: 134 ALADEVMVCGGKEVDFKAALSWLREKWAVTRLLCEGGGEVNDALFRADLVDEIHLTLCPW 193

Query: 319 VIGEGGIPS 327
           V G    P+
Sbjct: 194 VFGGRNAPT 202


>gi|261252226|ref|ZP_05944799.1| tRNA-specific adenosine-34 deaminase [Vibrio orientalis CIP 102891]
 gi|260935617|gb|EEX91606.1| tRNA-specific adenosine-34 deaminase [Vibrio orientalis CIP 102891]
          Length = 178

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 25/159 (15%)

Query: 1   MPVSSF---DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCP 53
           M  S F   D RFM  A+  +  H       P V  ++VKDG +I  G    +  +    
Sbjct: 1   MSESQFTPQDERFMRRAMELAA-HAETQGEVP-VGAVLVKDGEIIAEGWNESIGQHDATA 58

Query: 54  HAEVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+Q + +AGE          T YVTLEPC      P CA  ++   ++R+V    D  
Sbjct: 59  HAEMQTIRKAGEVLENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVFGAPDLK 112

Query: 109 VRVSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
              +G  L     +       +   ++E E ++ L A+ 
Sbjct: 113 AGAAGTVLNLFEHQAAYHYADVEKGLLEDECRVQLQAFF 151


>gi|297380640|gb|ADI35527.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori v225d]
          Length = 276

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 88/185 (47%), Gaps = 17/185 (9%)

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG-LQWLSQKGIIVDRMMES 132
           +TLEPC+ YG++P C+  +     +RVV+  ++ + +  G   LQ    +G++ +  +E+
Sbjct: 33  ITLEPCNSYGKTPACSGLLEILKPKRVVIATEENEAKKGGLARLQKARIEGVVCES-LEN 91

Query: 133 EGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191
           + K  L  +  R +E++    L K+A+    M G    G   ITG  S    H  RA  D
Sbjct: 92  KAKDLLLPF--RIMEQKGRFNLFKLALR---MNGDYHHGK--ITGQKSVIFTHNQRAICD 144

Query: 192 AILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            ++V   T+  D+P L  R   +  Q  +P   IL  H  +  +SK+      AP  +V 
Sbjct: 145 TLIVSGKTIRTDNPLLDARFCDSFYQNKNPNIAILSKH-SIDPNSKVFS----APNRLVN 199

Query: 250 ENDDP 254
              DP
Sbjct: 200 VFYDP 204


>gi|317124169|ref|YP_004098281.1| bifunctional deaminase-reductase domain protein [Intrasporangium
           calvum DSM 43043]
 gi|315588257|gb|ADU47554.1| bifunctional deaminase-reductase domain protein [Intrasporangium
           calvum DSM 43043]
          Length = 230

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 73/186 (39%), Gaps = 10/186 (5%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           +R ++ L   +S D  +  +    + ++     ++V   RA SDAILVG  T+  DDP L
Sbjct: 3   ERPYVLLSCGMSIDGYLDTSASKRLLLSNAADFDRVDAERAASDAILVGASTIRKDDPRL 62

Query: 208 TCR---------LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
             R           GL   SP ++ +  H  L  ++          ++       P  + 
Sbjct: 63  LVRSPERRADRVSRGLPA-SPTKVTVTSHADLDCNASFFTVGETEKLVYCASEAVPEASA 121

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
                   +       +  +L  L GRGV  L+VEGG  V    + + L D + L  +  
Sbjct: 122 RLSGVATVVDAGQPCTMHHVLEDLHGRGVRRLMVEGGGTVHTQLLTADLADELQLVVAPF 181

Query: 319 VIGEGG 324
            +G+  
Sbjct: 182 FVGDSA 187


>gi|167753725|ref|ZP_02425852.1| hypothetical protein ALIPUT_02006 [Alistipes putredinis DSM 17216]
 gi|167658350|gb|EDS02480.1| hypothetical protein ALIPUT_02006 [Alistipes putredinis DSM 17216]
          Length = 360

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 13/170 (7%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC-- 209
           +T+  AVS D  +       + ++      +VH LRA  DAILVG  T+  D+P L    
Sbjct: 3   VTVSTAVSADGYLDDRSPDRLILSTPEDWAEVHRLRAACDAILVGAETIRRDNPSLLVGD 62

Query: 210 ------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
                 R++      P+++ L    +LS ++          ++  + +D   L     ++
Sbjct: 63  EVLRRERIDRGLSPDPVKVTLTASCRLSPEANFFTRGDQEKIVFTSCSDPGPL-----RQ 117

Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
              +I         ++T L  RG+ SLLVEGGAA    F    LVD+  L
Sbjct: 118 VATVIPAAEITAALIVTELEKRGLRSLLVEGGAATLRMFFAENLVDTFRL 167



 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 4/124 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D R++  A+  SR     TS+    A ++  D  +            HAE +A+ +A   
Sbjct: 217 DRRYLQMAIDESRKCTPSTSSYCVGAVILTTDRKIFTGYTHETSPTHHAEQEAILKALAA 276

Query: 64  GEEARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           G E RGAT Y ++EPCS     P  C++ II    RRVV  + +PD  V  +G   L + 
Sbjct: 277 GVELRGATIYSSMEPCSERKSEPESCSELIIRHEFRRVVFALYEPDCFVCCQGALNLRRH 336

Query: 123 GIIV 126
            I V
Sbjct: 337 RIEV 340


>gi|90407089|ref|ZP_01215278.1| hypothetical protein PCNPT3_02575 [Psychromonas sp. CNPT3]
 gi|90311811|gb|EAS39907.1| hypothetical protein PCNPT3_02575 [Psychromonas sp. CNPT3]
          Length = 182

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 19/118 (16%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D ++M  AL  +     L      V  ++VKD  VI  G    + ++  C HAEV A+ E
Sbjct: 22  DEKWMQYALLLADKAEALGEV--PVGAVLVKDNEVIAEGWNLSILSHDACAHAEVMAVRE 79

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           AG + +       T YVTLEPC      P CA  ++   I+R+V     PD++    G
Sbjct: 80  AGHKLQNYRLIDCTLYVTLEPC------PMCAGALVHARIKRLVYGA--PDLKTGAAG 129


>gi|182418731|ref|ZP_02950004.1| tRNA-specific adenosine deaminase [Clostridium butyricum 5521]
 gi|237669698|ref|ZP_04529675.1| tRNA-specific adenosine deaminase [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377425|gb|EDT74981.1| tRNA-specific adenosine deaminase [Clostridium butyricum 5521]
 gi|237654772|gb|EEP52335.1| tRNA-specific adenosine deaminase [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 149

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 15/101 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEE-----ARGATAYVTLEPCSH 81
           V  +IVKDG++IGRG     T      HAE+ A++EA          GA  YVTLEPC  
Sbjct: 22  VGAVIVKDGVIIGRGHNLKETLNDVTAHAEILAIKEASNNLGDWRLDGAEMYVTLEPC-- 79

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
               P CA  I++  I +V +   + D+   G  +  L  +
Sbjct: 80  ----PMCASAIVQSRISKVYIGTFNKDMGACGSVISLLDSR 116


>gi|253580414|ref|ZP_04857679.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848144|gb|EES76109.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 181

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 22/171 (12%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
           RFM  A+R ++    L      + C+IV +G +I RG     T      HAE+ A+ +A 
Sbjct: 15  RFMKEAIRQAKKAEALEEV--PIGCVIVHEGKIIARGYNRRNTDKNTLSHAELNAIRKAS 72

Query: 65  EEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           ++       G T YVTLEPC        C+  +++  I  VV+   +     +G  +  L
Sbjct: 73  KKLGDWRLEGCTMYVTLEPCQM------CSGALVQSRIDEVVIGCMNAKAGCAGSVMNLL 126

Query: 120 SQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG 165
              G      I+  ++E E    L  +  +  EK+      +  +Q+N  G
Sbjct: 127 QVDGFNHQVKIIQGVLEEECSSMLSEFFRKLREKKKQEKAALKAAQENPEG 177


>gi|297559747|ref|YP_003678721.1| CMP/dCMP deaminase zinc-binding protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844195|gb|ADH66215.1| CMP/dCMP deaminase zinc-binding protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 156

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 70/143 (48%), Gaps = 8/143 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGC-PHAEVQALEEA- 63
           DAR++   +  SR     + T  SV C +V  DG V+G G +       HAE  AL E  
Sbjct: 13  DARWLRRTVELSR-SCPPSDTAFSVGCAVVAADGTVLGEGYSRRDDPHDHAEEAALREVD 71

Query: 64  GEEAR--GATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            ++ R  GAT Y +LEPCS     P  C+  I+   + RVV    +P V V   G + L 
Sbjct: 72  ADDPRLAGATLYSSLEPCSSRASRPLSCSALILATPVARVVFAWREPSVFVDCDGAERLR 131

Query: 121 QKG-IIVDRMMESEGKIFLHAYL 142
             G  +V+R   ++G   ++A+L
Sbjct: 132 AAGRTVVERPDLADGVREVNAHL 154


>gi|23097481|ref|NP_690947.1| hypothetical protein OB0026 [Oceanobacillus iheyensis HTE831]
 gi|22775704|dbj|BAC11982.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 166

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 20/134 (14%)

Query: 31  VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEE-----ARGATAYVTLEPCSH 81
           +  +IV DG ++G+G     +      HAE+ A++EA  E         T YVTLEPC  
Sbjct: 32  IGAVIVHDGEIVGKGFNLRESMQATLTHAELLAMQEANNEIGSWRLEDCTLYVTLEPC-- 89

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P CA  I++  ++RVV    DP    +G  +  L++        +   ++E +   
Sbjct: 90  ----PMCAGAIVQSRMKRVVYGAPDPKAGCAGTIMNLLNEPRFNHQVEVTSGVLEQQCST 145

Query: 137 FLHAYLTRQVEKRS 150
            L  +     EK+S
Sbjct: 146 ILKEFFKELREKKS 159


>gi|307267454|ref|ZP_07548942.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306917535|gb|EFN47821.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 148

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
           RFM AA+  ++    L      V  +IVKDG +IG+G     ++     HAE+ A++EA 
Sbjct: 4   RFMEAAILEAKKSYQLGEV--PVGAVIVKDGQIIGKGFNQKESSNDATAHAEILAIKEAC 61

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL--- 116
           +          + YVTLEPC      P CA  I+E  I+RV +  +      +G  +   
Sbjct: 62  KTLGSWRLDDCSMYVTLEPC------PMCAGAILESRIKRVYIGAESERTGAAGTVVDIL 115

Query: 117 --QWLSQKGIIVDRMMESEGKIFLHAYL 142
              +L  K  +   +ME E K  L  + 
Sbjct: 116 NNSYLGSKTEVYFGIMEEECKTLLKDFF 143


>gi|295132300|ref|YP_003582976.1| cytidine/deoxycytidylate deaminase family protein [Zunongwangia
           profunda SM-A87]
 gi|294980315|gb|ADF50780.1| cytidine/deoxycytidylate deaminase family protein [Zunongwangia
           profunda SM-A87]
          Length = 143

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 36/139 (25%)

Query: 9   RFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53
           ++  A LR +R W          V  +IVKD ++I  G   Y G P              
Sbjct: 8   KYDKAYLRIAREWSKLSHCKRKQVGAVIVKDRMIISDG---YNGTPSGFENFCEDEEGYT 64

Query: 54  -----HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE  A+     + +  +GAT Y+T+ PC        C++ I + GI R+V CVD
Sbjct: 65  KWYVLHAEANAILKVAASTQSCQGATLYITMSPC------KECSKLIHQAGITRLVYCVD 118

Query: 106 DPDVRVSGRGLQWLSQKGI 124
             D      GL +L + G+
Sbjct: 119 YKD----NSGLDFLKKAGV 133


>gi|326390318|ref|ZP_08211877.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter ethanolicus JW
           200]
 gi|325993595|gb|EGD52028.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter ethanolicus JW
           200]
          Length = 148

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
           RFM AA+  ++    L      V  +IVKDG +IG+G     ++     HAE+ A++EA 
Sbjct: 4   RFMEAAILEAKKSYQLGEV--PVGAVIVKDGQIIGKGFNQKESSNDATTHAEILAIKEAC 61

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL--- 116
           +          + YVTLEPC      P CA  I+E  I+RV +  +      +G  +   
Sbjct: 62  KTLGSWRLDDCSMYVTLEPC------PMCAGAILESRIKRVYIGAESERTGAAGTVVDIL 115

Query: 117 --QWLSQKGIIVDRMMESEGKIFLHAYL 142
              +L  K  +   +ME E K  L  + 
Sbjct: 116 NNSYLGSKTEVYFGIMEEECKTLLKDFF 143


>gi|158319077|ref|YP_001511584.1| CMP/dCMP deaminase zinc-binding [Alkaliphilus oremlandii OhILAs]
 gi|158139276|gb|ABW17588.1| CMP/dCMP deaminase zinc-binding [Alkaliphilus oremlandii OhILAs]
          Length = 154

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 22/158 (13%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALE 61
            +  FM  A+  ++           +  ++VKD  +IGRG     T      HAE+ A++
Sbjct: 3   LEENFMLEAIEEAK--KAFNKKEVPIGAVVVKDNEIIGRGHNLRETTKNSISHAEIMAIQ 60

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           EA     G      T YVT+EPC      P CA  I++  I++VV+   DP     G  +
Sbjct: 61  EACKFLGGWRLTDCTLYVTIEPC------PMCAGAILQSRIQKVVIGAMDPKAGACGSLV 114

Query: 117 QWL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
             L     + +  I   ++E E  + +  +     EKR
Sbjct: 115 NLLNDSRFNHQTEIEQGVLEEECSLLMKEFFKALREKR 152


>gi|254509189|ref|ZP_05121287.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus 16]
 gi|219547894|gb|EED24921.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus 16]
          Length = 187

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 22/158 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEE 62
           D ++M  A+  +  H       P V  ++VKDG +I  G     GC     HAE+Q + +
Sbjct: 17  DEQYMRRAMELA-AHAETEGEVP-VGAVLVKDGEIIAEGWNQSIGCHDATAHAEMQTIRK 74

Query: 63  AG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AG   E  R    T YVTLEPC      P CA  ++   ++RVV    D     +G  L 
Sbjct: 75  AGQVLENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVFGAPDLKAGAAGTVLN 128

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRS 150
               +       +   ++E E ++ L ++  R+ +++ 
Sbjct: 129 LFEHQAAYHYADVEQGLLEEECRVQLQSFFKRRRKEKK 166


>gi|238059485|ref|ZP_04604194.1| deaminase-reductase domain-containing protein [Micromonospora sp.
           ATCC 39149]
 gi|237881296|gb|EEP70124.1| deaminase-reductase domain-containing protein [Micromonospora sp.
           ATCC 39149]
          Length = 296

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 84/199 (42%), Gaps = 46/199 (23%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
           ++ L  A+S D  I  A    + ++     ++V  +RA  DAILVG  TV ADDP L  R
Sbjct: 31  YVLLSCAMSIDGYIDDATDQRLLLSNEADLDRVDAVRASCDAILVGAATVRADDPRLVIR 90

Query: 211 ---------LNGLQEHSPMRII------LDP---HFKLSLDSKII--KTALLA------- 243
                      GL   SP ++       LDP    F +    +I+   T++LA       
Sbjct: 91  SPERRRERAARGLPS-SPTKVTVTGSGDLDPAARFFTVGDADRIVYCATSVLAETRHRLG 149

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            +  V +  DPV                    +++L  L  RGV  L+VEGGAAV   F+
Sbjct: 150 ALATVADGGDPV------------------GPRRVLADLAARGVRRLMVEGGAAVHTLFL 191

Query: 304 NSRLVDSIILYRSQIVIGE 322
            + L D + L  +   +G 
Sbjct: 192 GAGLADELHLVVAPFFVGR 210


>gi|302325469|gb|ADL24670.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 155

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 57/136 (41%), Gaps = 19/136 (13%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE- 65
           M  ALR  +  +        + C+IVKDG+VIG+G            HAE+ A+  A   
Sbjct: 1   MRMALR--QAQIAFDMKEIPIGCVIVKDGVVIGKGYNQVEQLKDATAHAEIIAIGTAAST 58

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                  G T YVTLEPC      P CA  I+   + R+V     PD R  G G      
Sbjct: 59  LDNWRLDGCTLYVTLEPC------PMCAGAILNSRVSRIV--YGSPDSRFGGCGTTIDVI 110

Query: 122 KGIIVDRMMESEGKIF 137
            G  + R +E  G I 
Sbjct: 111 TGNALKRAVEVTGGIL 126


>gi|262395051|ref|YP_003286905.1| tRNA-specific adenosine-34 deaminase [Vibrio sp. Ex25]
 gi|262338645|gb|ACY52440.1| tRNA-specific adenosine-34 deaminase [Vibrio sp. Ex25]
          Length = 182

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 27/141 (19%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++VKDG +I  G    +       HAE+Q L +AG++         T YVTLEPC  
Sbjct: 32  VGAVLVKDGEIIAEGWNRSIGTNDATAHAEIQTLRKAGQKIENYRLLDTTLYVTLEPC-- 89

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-------QWLSQKGIIVDRMMESEG 134
               P CA  ++   ++RVV     PD++    G        Q      ++   ++E E 
Sbjct: 90  ----PMCAGALLHSRVKRVVFGA--PDLKAGAAGTVLNLFESQAAYHYALVEKGLLEDEC 143

Query: 135 KIFLHAYLTRQVEKRSHITLK 155
           +  L A+  R   +R  I  K
Sbjct: 144 RTQLQAFFKR---RRKEIKAK 161


>gi|315923999|ref|ZP_07920227.1| deoxycytidylate deaminase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622839|gb|EFV02792.1| deoxycytidylate deaminase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 165

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 12/90 (13%)

Query: 54  HAEVQALEEAGEEA-RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD---DPDV 109
           HAE  A+  +G +  +GAT YVTL PC+       C + II+CGI++VV   D   D D 
Sbjct: 83  HAEFNAILNSGAKTLQGATLYVTLFPCNE------CTKAIIQCGIKKVVYMEDKYPDSDA 136

Query: 110 RVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
            ++ + +  ++  G++  R  E    I LH
Sbjct: 137 VIAAKRM--MNMTGVVYQRYNEPHRDITLH 164


>gi|330807694|ref|YP_004352156.1| deaminase [Pseudomonas brassicacearum subsp. brassicacearum NFM421]
 gi|327375802|gb|AEA67152.1| putative deaminase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 165

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 16/113 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           V  ++V+DG +IGRG    ++ +    HAE+ A+  A +        G+T YVTLEPCS 
Sbjct: 37  VGAVLVQDGEIIGRGFNCPISGHDPSAHAEMVAIRAAAQAVSNYRLPGSTLYVTLEPCSM 96

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
                 CA  I+   I RVV    +P   +     Q+ SQ G +  R+M   G
Sbjct: 97  ------CAGLIVHSRIARVVYGALEPKAGIVQSQGQFFSQ-GFLNHRVMYEGG 142


>gi|153834810|ref|ZP_01987477.1| tRNA-specific adenosine deaminase [Vibrio harveyi HY01]
 gi|148868738|gb|EDL67812.1| tRNA-specific adenosine deaminase [Vibrio harveyi HY01]
          Length = 177

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 26/132 (19%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG------ATAYVTLEPCS 80
           V  ++VKDG +I  G    + A+    HAE+Q L +AG +A G       T YVTLEPC 
Sbjct: 32  VGAVLVKDGEIIAEGWNRSICAHDATAHAEIQTLRKAG-KALGNYRLLDTTLYVTLEPC- 89

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-------QWLSQKGIIVDRMMESE 133
                P CA  ++   ++RVV     PD++    G        Q       + + ++E E
Sbjct: 90  -----PMCAGALLHSRVKRVVYGA--PDLKAGAAGTVLNLFESQAAYHYATVENGLLEEE 142

Query: 134 GKIFLHAYLTRQ 145
            +  L A+  R+
Sbjct: 143 CRSQLQAFFKRR 154


>gi|328472552|gb|EGF43415.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus 10329]
          Length = 199

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 70/163 (42%), Gaps = 25/163 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM  AL  +     L    P V  ++VKDG VI  G    + ++    HAE+Q L  
Sbjct: 35  DEIFMRRALALAE-QAELEGEVP-VGAVLVKDGEVIAEGWNRSICSHDATAHAEIQTLRN 92

Query: 63  AG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AG   E  R    T YVTLEPC      P CA  ++   ++RVV    D     +G  L 
Sbjct: 93  AGAVLENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVFGAPDLKAGAAGTVLN 146

Query: 118 WLSQKG----IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLK 155
               +       V+R ++E E +  L A+  R   +R  I  K
Sbjct: 147 LFESQAAYHYATVERGLLEDECREQLQAFFKR---RRKEIKAK 186


>gi|304311855|ref|YP_003811453.1| Cytidine/deoxycytidylate deaminase, zinc-binding protein [gamma
           proteobacterium HdN1]
 gi|301797588|emb|CBL45809.1| Cytidine/deoxycytidylate deaminase, zinc-binding protein [gamma
           proteobacterium HdN1]
          Length = 171

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 55/117 (47%), Gaps = 25/117 (21%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------HA 55
           S+ D R+M  AL  +R   G  +    V  ++V+DG  IG G      CP        HA
Sbjct: 16  SAEDRRWMERALALARQ--GAEAGEVPVGAVVVRDGEAIGEGFN----CPIGTHDPTAHA 69

Query: 56  EVQALEEAG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           E+ AL  AG   E  R  GAT YV+LEPC+       CA  I+   I RVV    +P
Sbjct: 70  EICALRAAGRAIENYRLAGATLYVSLEPCAM------CAGAIVHARIDRVVYAAMEP 120


>gi|260589044|ref|ZP_05854957.1| tRNA-specific adenosine deaminase [Blautia hansenii DSM 20583]
 gi|331083249|ref|ZP_08332362.1| hypothetical protein HMPREF0992_01286 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540823|gb|EEX21392.1| tRNA-specific adenosine deaminase [Blautia hansenii DSM 20583]
 gi|330404330|gb|EGG83875.1| hypothetical protein HMPREF0992_01286 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 164

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 17/127 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D RFM  A + +     L      + C+IV +G +I RG     T      HAE+ A+ +
Sbjct: 4   DERFMREAKKQAMKAYALREV--PIGCVIVYEGKIIARGYNRRNTDKNTVSHAEINAIRK 61

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++       G T YVTLEPC        CA  II+  + RVV+   +P    +G  L 
Sbjct: 62  ASKKLGDWRLEGCTLYVTLEPCQM------CAGAIIQARVDRVVIGSMNPKAGCAGSVLN 115

Query: 118 WLSQKGI 124
            L   G 
Sbjct: 116 LLEMDGF 122


>gi|15920477|ref|NP_376146.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
           tokodaii str. 7]
 gi|15621260|dbj|BAB65255.1| 213aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 213

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 22/155 (14%)

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           K ++H+LR + DA+LVG  TV  D+P+L  +    +  +P+R+ +     L+ D  +   
Sbjct: 32  KMRLHILRTEVDAVLVGSNTVRIDNPKLLVKY--AKGRNPVRVTISES--LNFDPNLNIF 87

Query: 240 ALLAPVIIVT------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-----GVT 288
           ++    II T       N+D   A   +KK + I     R L+KL + ++       GV 
Sbjct: 88  SVPPDTIIYTTYQAYLRNEDK--ANELKKKGVKI-----RVLEKLSSCIIAEDLYNLGVK 140

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            +L+EGG     +FI     D I +  S  + G G
Sbjct: 141 RILIEGGGRTIWNFIKDNCFDEIRITISPKIFGNG 175


>gi|325917446|ref|ZP_08179655.1| tRNA-adenosine deaminase [Xanthomonas vesicatoria ATCC 35937]
 gi|325536320|gb|EGD08107.1| tRNA-adenosine deaminase [Xanthomonas vesicatoria ATCC 35937]
          Length = 171

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 15/121 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57
           P ++ D  +M  AL+ +          P  A LI  +G V+G G    + ++    HAE+
Sbjct: 12  PQAAIDTHWMQHALQLAERAERDYDEIPVGAVLIDAEGQVLGEGWNYNIASHDPSAHAEI 71

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+ E G         G T YVTLEPC+       CA  +I   I RVV    DP     
Sbjct: 72  MAMREGGRRLANHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGAC 125

Query: 113 G 113
           G
Sbjct: 126 G 126


>gi|157150388|ref|YP_001449474.1| putative cytidine/deoxycytidylate deaminase [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|157075182|gb|ABV09865.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           gordonii str. Challis substr. CH1]
          Length = 177

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 11/79 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
           FM  AL+ +R  + L +    + C+IV+DG +IGRG  A         HAE+ A+EEA  
Sbjct: 33  FMLEALKEAR--IALENDEIPIGCVIVRDGQIIGRGHNAREELQRAVMHAEIMAIEEANH 90

Query: 66  EARG-----ATAYVTLEPC 79
              G      T +VT+EPC
Sbjct: 91  HENGWRLLDTTLFVTIEPC 109


>gi|298207386|ref|YP_003715565.1| cytidine/deoxycytidylate deaminase family protein [Croceibacter
           atlanticus HTCC2559]
 gi|83850022|gb|EAP87890.1| cytidine/deoxycytidylate deaminase family protein [Croceibacter
           atlanticus HTCC2559]
          Length = 143

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 36/144 (25%)

Query: 9   RFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53
           ++  A LR +R W          V  LIVKD ++I  G   Y G P              
Sbjct: 8   KYDKAYLRIAREWGQLSHCKRKQVGALIVKDRMIISDG---YNGTPTGFENYCEDDEGYT 64

Query: 54  -----HAEVQA-LEEAG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE  A L+ AG  +  R AT Y+T+ PC        C++ I + GI+RVV   D
Sbjct: 65  KWYVLHAEANAILKVAGSTQSCRDATLYITMSPC------KDCSKLIHQSGIKRVVYQHD 118

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRM 129
             D      GL++L + G++++ +
Sbjct: 119 YKD----NSGLKFLEKAGVLIEHI 138


>gi|291537693|emb|CBL10805.1| Cytosine/adenosine deaminases [Roseburia intestinalis M50/1]
          Length = 154

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 17/123 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D ++M AA+R ++    L      + C+IV+D  +I RG     T      HAE+ A+ +
Sbjct: 4   DEKYMKAAIRQAKKAYALDEV--PIGCVIVQDDKIIARGYNRRNTEGNTLAHAELTAIRK 61

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++         T YVTLEPC        CA  I++  +++VV+   +P    +G  L 
Sbjct: 62  ASKKTGDWRLEDCTMYVTLEPCQM------CAGAIVQSRMKKVVIGSMNPKAGCAGSVLN 115

Query: 118 WLS 120
            L 
Sbjct: 116 LLQ 118


>gi|121998459|ref|YP_001003246.1| CMP/dCMP deaminase, zinc-binding [Halorhodospira halophila SL1]
 gi|121589864|gb|ABM62444.1| CMP/dCMP deaminase, zinc-binding protein [Halorhodospira halophila
           SL1]
          Length = 142

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 17/122 (13%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEE 66
           M+ AL  +R+          V  ++V+DG+++G G    + +     HAE+ AL  AG+ 
Sbjct: 1   MARALELARYAA--DQGEVPVGAVVVRDGVLLGEGRNQPIVSRDPTAHAEINALRAAGQA 58

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           A      GAT YVTLEPC        CA  +I   I R+V    DP     G     L  
Sbjct: 59  AGAYRLPGATLYVTLEPCFM------CAGALIHARIERLVYGAADPKTGACGGQFDLLGL 112

Query: 122 KG 123
            G
Sbjct: 113 PG 114


>gi|116329381|ref|YP_799101.1| pyrimidine reductase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116330018|ref|YP_799736.1| pyrimidine reductase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116122125|gb|ABJ80168.1| Pyrimidine reductase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116123707|gb|ABJ74978.1| Pyrimidine reductase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 217

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 99/212 (46%), Gaps = 24/212 (11%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
           ++++ +A++ D  +         ++    K ++  +R+++D +++G  ++L DDP +  R
Sbjct: 6   NVSINMAMTLDGKVSRPDKRWYGLSSRNDKKRMDEIRSKADVLILGKNSILNDDPVIHLR 65

Query: 211 -LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII-VTENDDPVLALAFRKKNI--- 265
            +  +++  P  +IL     L  D K+ + +   P+I  + EN   VL       N+   
Sbjct: 66  YVRDIKDPRP--VILLRSGTLPEDKKVFRFSKQPPLIFCLNENYSSVL------DNLCSV 117

Query: 266 -NIIYCDCRDLKKL--LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
             I+     DL  L  L IL   G   +L+EGG ++  SF  S L+  I L     +IG+
Sbjct: 118 AEIVSLPGNDLSPLEVLKILSEMGYREILLEGGPSLNDSFFRSDLISRIYLTIVPFLIGQ 177

Query: 323 GGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
             +PS    P E  YL  NF   + D   S+V
Sbjct: 178 KDLPSIAGGPKE--YL--NFDQKKWDLISSEV 205


>gi|77460805|ref|YP_350312.1| tRNA-adenosine deaminase [Pseudomonas fluorescens Pf0-1]
 gi|77384808|gb|ABA76321.1| putative deaminase [Pseudomonas fluorescens Pf0-1]
          Length = 165

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 65/155 (41%), Gaps = 43/155 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------HAE 56
           S D  FM  AL  +     L      V  ++V+DG +IGRG      CP        HAE
Sbjct: 13  SRDRDFMREALELAAQGAALGEV--PVGAVLVQDGEIIGRGFN----CPISTSDPSAHAE 66

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+  A +        G+T YVTLEPCS       CA  I+   + RVV    +P    
Sbjct: 67  MVAIRAAAQAVDNYRLPGSTLYVTLEPCSM------CAGLIVHSRVSRVVFGALEP---- 116

Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQV 146
                    + GI+     +S+G+ F   +L  +V
Sbjct: 117 ---------KAGIV-----QSQGQFFTQGFLNHRV 137


>gi|154505232|ref|ZP_02041970.1| hypothetical protein RUMGNA_02745 [Ruminococcus gnavus ATCC 29149]
 gi|153794430|gb|EDN76850.1| hypothetical protein RUMGNA_02745 [Ruminococcus gnavus ATCC 29149]
          Length = 179

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 17/125 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
           D ++M  A+R ++    L      + C+IV    +IGRG            HAE+QA+ +
Sbjct: 23  DEKYMREAIRQAKKAYALEEV--PIGCVIVYQDKIIGRGYNRRTVDKNTLAHAELQAIRK 80

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++         T YVTLEPC        C+  I++  I+RVVV   +P    +G  L 
Sbjct: 81  ASKKMDDWRLEDCTMYVTLEPCQM------CSGAIVQARIKRVVVGCMNPKAGCAGSILN 134

Query: 118 WLSQK 122
            L  K
Sbjct: 135 LLDMK 139


>gi|150006872|ref|YP_001301615.1| deoxycytidylate deaminase [Parabacteroides distasonis ATCC 8503]
 gi|255016096|ref|ZP_05288222.1| deoxycytidylate deaminase [Bacteroides sp. 2_1_7]
 gi|256842138|ref|ZP_05547643.1| deoxycytidylate deaminase [Parabacteroides sp. D13]
 gi|298377298|ref|ZP_06987251.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
           3_1_19]
 gi|301308695|ref|ZP_07214647.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
           20_3]
 gi|149935296|gb|ABR41993.1| deoxycytidylate deaminase [Parabacteroides distasonis ATCC 8503]
 gi|256736454|gb|EEU49783.1| deoxycytidylate deaminase [Parabacteroides sp. D13]
 gi|298265712|gb|EFI07372.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
           3_1_19]
 gi|300833219|gb|EFK63837.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
           20_3]
          Length = 144

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 62/144 (43%), Gaps = 38/144 (26%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
            D R++  A   + W          V  L+VKD ++I  G   Y G P            
Sbjct: 11  LDKRYLRMA---AIWAENSYCKRRQVGALLVKDKMIISDG---YNGTPAGFENVCEDENN 64

Query: 54  -------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A+ +   +   ++GAT YVT  PC        CA+ II+ GI+RVV  
Sbjct: 65  VTKPYVLHAEANAITKVAASSNSSKGATIYVTSSPCIE------CAKLIIQSGIKRVVY- 117

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD 127
               + R++  G + L + GIIVD
Sbjct: 118 --SENYRIAD-GCELLKRAGIIVD 138


>gi|171463305|ref|YP_001797418.1| CMP/dCMP deaminase zinc-binding [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171192843|gb|ACB43804.1| CMP/dCMP deaminase zinc-binding [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 152

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 17/133 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           M  ++ D ++M  A+   +  +   +    V  ++VKDG VI +     +  +    HAE
Sbjct: 1   MTQAALDQQYMRMAI--EQAQLAAQAGEVPVGAVLVKDGQVIAKAFNKPIANHDPSAHAE 58

Query: 57  VQALEEAG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL EA    E  R  G+T YVTLEPC+       C+  ++   I RVV    DP    
Sbjct: 59  MLALREAALAQENYRIPGSTLYVTLEPCAM------CSGAMLHARIDRVVFGAPDPKTGA 112

Query: 112 SGRGLQWLSQKGI 124
           +G  L   + K I
Sbjct: 113 AGSVLDLFASKQI 125


>gi|56478507|ref|YP_160096.1| cytosine/adenosine deaminase [Aromatoleum aromaticum EbN1]
 gi|56314550|emb|CAI09195.1| probable cytosine/adenosine deaminases [Aromatoleum aromaticum
           EbN1]
          Length = 154

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 17/125 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM AAL  +R   G     P V  ++V DG ++GRG    +  +    HAEV AL +
Sbjct: 3   DEDFMRAALEQARM-AGACDEVP-VGAVVVLDGEIVGRGFNQPIRRHDPSAHAEVMALRD 60

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AGE        G   +VTLEPC+       C+  I+   + RVV    DP   V+G  + 
Sbjct: 61  AGERLGNYRFPGCELFVTLEPCAM------CSGAIMHARVARVVFGARDPRTGVAGSIID 114

Query: 118 WLSQK 122
             +++
Sbjct: 115 LFAER 119


>gi|121634737|ref|YP_974982.1| putative cytosine deaminase [Neisseria meningitidis FAM18]
 gi|120866443|emb|CAM10189.1| putative cytosine deaminase (EC 3.5.4.1) [Neisseria meningitidis
           FAM18]
 gi|325132183|gb|EGC54879.1| tRNA-specific adenosine deaminase [Neisseria meningitidis M6190]
 gi|325136130|gb|EGC58739.1| tRNA-specific adenosine deaminase [Neisseria meningitidis M0579]
 gi|325198167|gb|ADY93623.1| tRNA-specific adenosine deaminase [Neisseria meningitidis G2136]
 gi|325202278|gb|ADY97732.1| tRNA-specific adenosine deaminase [Neisseria meningitidis
           M01-240149]
          Length = 239

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 28/138 (20%)

Query: 2   PVSSFD-----ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52
           PV++F      A FM  AL  ++    L    P V  +IV DG +I    +A+  C    
Sbjct: 82  PVAAFPPQGEMAHFMGLALEQAKLS-ALMGEIP-VGAVIVSDGKIIA---SAHNTCIADC 136

Query: 53  ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
               HAE+ AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+   
Sbjct: 137 NVSRHAEINALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 190

Query: 105 DDPDVRVSGRGLQWLSQK 122
            +P    +G  +   + K
Sbjct: 191 AEPKTGAAGSIVNLFADK 208


>gi|313156981|gb|EFR56413.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Alistipes sp. HGB5]
          Length = 358

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 78/205 (38%), Gaps = 60/205 (29%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR- 210
           ITL  AV+ D  +       + I+      +V+ LRA  DAILVG  T+  DDP L  R 
Sbjct: 3   ITLSAAVTADGFLDDNSPRRLIISTPEDWAEVYRLRAAHDAILVGAETLRRDDPSLLVRD 62

Query: 211 --------------------LNGLQEHSP----------MRIILDPHFKLSLDSKIIKTA 240
                               L G  E SP           R +  PH    +DS      
Sbjct: 63  EEVRARRREQGLPPDIAKATLTGTGELSPGLRFFTEGEAERYVFSPH---EIDS------ 113

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
            L  +  V   + P+ A                  K ++T L  RGV  L+VEGGAAV  
Sbjct: 114 -LQNIATVISTEGPITA------------------KLIVTQLEKRGVERLMVEGGAAVLR 154

Query: 301 SFINSRLVDSIIL-YRSQIVIGEGG 324
            F+   + D++ L    Q+ +G  G
Sbjct: 155 MFLGEGMADTLRLAVNPQLRLGAAG 179



 Score = 44.3 bits (103), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 4/128 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S+ D RF+  A+   R      ++    A ++  DG +            HAE +A+ +
Sbjct: 212 TSAADLRFLKQAVDEGRKCTPSATSYCVGAVVVAADGRIFAGHTHETSPTHHAEQEAIAK 271

Query: 63  AGEEA---RGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           A       RGA  Y ++EPCS     P  C Q +++ G  R V  + +PD  V  RG   
Sbjct: 272 ALAAGAPLRGAAMYSSMEPCSQRASEPESCTQLLLKYGFARAVFALYEPDCFVCCRGALT 331

Query: 119 LSQKGIIV 126
           L + G+ V
Sbjct: 332 LREAGVDV 339


>gi|269965211|ref|ZP_06179345.1| zinc-binding domain protein [Vibrio alginolyticus 40B]
 gi|269830197|gb|EEZ84424.1| zinc-binding domain protein [Vibrio alginolyticus 40B]
          Length = 169

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 27/162 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++VKDG +I  G    +       HAE+Q L +AG++         T YVTLEPC  
Sbjct: 19  VGAVLVKDGEIIAEGWNRSIGTNDATAHAEIQTLRKAGQKLENYRLLDTTLYVTLEPC-- 76

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-------QWLSQKGIIVDRMMESEG 134
               P CA  ++   ++RVV     PD++    G        Q      ++   ++E E 
Sbjct: 77  ----PMCAGALLHSRVKRVVFGA--PDLKAGAAGTVLNLFESQAAYHYALVEKGLLEDEC 130

Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
           +  L A+  R   +R  I  K    +    G +  GS    G
Sbjct: 131 RTQLQAFFKR---RRKEIKAKKQAQKALENGESEQGSRSSEG 169


>gi|261401120|ref|ZP_05987245.1| tRNA-specific adenosine deaminase [Neisseria lactamica ATCC 23970]
 gi|269208892|gb|EEZ75347.1| tRNA-specific adenosine deaminase [Neisseria lactamica ATCC 23970]
          Length = 239

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 28/138 (20%)

Query: 2   PVSSFD-----ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52
           PV++F      A FM  AL  ++    L    P V  +IV DG +I    +A+  C    
Sbjct: 82  PVAAFPPQGEMAHFMGLALEQAKLS-ALMGEIP-VGAVIVSDGKIIA---SAHNTCIADC 136

Query: 53  ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
               HAE+ AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+   
Sbjct: 137 NVSRHAEINALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 190

Query: 105 DDPDVRVSGRGLQWLSQK 122
            +P    +G  +   + K
Sbjct: 191 AEPKTGAAGSIVNLFADK 208


>gi|325297264|ref|YP_004257181.1| CMP/dCMP deaminase zinc-binding protein [Bacteroides salanitronis
           DSM 18170]
 gi|324316817|gb|ADY34708.1| CMP/dCMP deaminase zinc-binding protein [Bacteroides salanitronis
           DSM 18170]
          Length = 144

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 49/118 (41%), Gaps = 34/118 (28%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
            D R+M  A   + W      T   V  LIVKD ++I  G   Y G P            
Sbjct: 11  LDKRYMRMA---TIWAENSYCTRRKVGALIVKDKMIISDG---YNGTPAGFENVCEDENG 64

Query: 54  -------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                  HAE  A+ +   +   + GAT YVT  PC        CA+ II+ GI+RVV
Sbjct: 65  LTKPYVLHAEANAITKIARSNNSSEGATLYVTASPCIE------CAKLIIQAGIKRVV 116


>gi|293364019|ref|ZP_06610755.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Mycoplasma alligatoris A21JP2]
 gi|292552509|gb|EFF41283.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Mycoplasma alligatoris A21JP2]
          Length = 158

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 68/163 (41%), Gaps = 42/163 (25%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53
           ++D  F+S A + S     L S +PS    AC+I  +  VIG G   Y G P        
Sbjct: 6   NWDTYFISLA-KIS----ALRSKDPSTQVGACIINDEKKVIGLG---YNGMPNGNDIDFP 57

Query: 54  -----------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                            HAEV A+  A  + +GA  Y TL PC +      CA+ I++ G
Sbjct: 58  WGRDSKIAKETKYPYVVHAEVNAILNAIVQPKGAIIYTTLYPCIN------CAKVIVQSG 111

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
           I+ VV   D       G   ++L +K  I  R + +  KI L 
Sbjct: 112 IKEVVFEDDKYKDTEDGEMARYLFEKCNIKTRKLTTSAKIILE 154


>gi|161869845|ref|YP_001599014.1| cytidine and deoxycytidylate deaminase family protein [Neisseria
           meningitidis 053442]
 gi|161595398|gb|ABX73058.1| cytidine and deoxycytidylate deaminase family protein [Neisseria
           meningitidis 053442]
          Length = 239

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 28/138 (20%)

Query: 2   PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52
           PV++F ++     FM  ALR +            V  +IV DG +I    +A+  C    
Sbjct: 82  PVAAFPSQEEMEHFMREALRQAEQSAA--DGEIPVGAVIVSDGKIIA---SAHNTCIADC 136

Query: 53  ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
               HAE+ AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+   
Sbjct: 137 NVSRHAEINALAQAGREIQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 190

Query: 105 DDPDVRVSGRGLQWLSQK 122
            +P    +G  +   + K
Sbjct: 191 AEPKTGAAGSIVNLFADK 208


>gi|330957624|gb|EGH57884.1| cytosine deaminase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 145

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 20/146 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT--AYGGCP--HAEVQALEEAGE 65
           FM AA+  +R  +GL      +  +IV DG +IGRG       G P  H E+ ALE AG 
Sbjct: 4   FMQAAIDEAR--LGLDEGGIPIGSVIVHDGKIIGRGHNRRVQEGSPTRHGEMDALENAGR 61

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +     R A  Y TL PC+       C+  I+  GIR V+V  +   +       + L  
Sbjct: 62  QPASVYRDAVLYTTLSPCAM------CSGAILLYGIRTVIVGENQSFMGEE----ELLRS 111

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVE 147
           +G+ ++ +  +E K  +  ++  + E
Sbjct: 112 RGVSIEVLDNAECKDMMQGFIKSKPE 137


>gi|291562950|emb|CBL41766.1| Cytosine/adenosine deaminases [butyrate-producing bacterium SS3/4]
          Length = 186

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 17/133 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
           M   + +  +M  A+R ++    L      + C+IV DG +I RG            HAE
Sbjct: 7   MRKMTIEEHYMKEAIRQAKKAAALKEV--PIGCVIVYDGRIIARGYNRRTVDKNVLAHAE 64

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+  A          G T YVTLEPC      P CA  I++  I +VV+   +P    
Sbjct: 65  IIAMRRACRILGDWRLEGCTMYVTLEPC------PMCAGAIVQARIPKVVIGCMNPKAGC 118

Query: 112 SGRGLQWLSQKGI 124
           +G  L  L + G 
Sbjct: 119 AGSVLDMLHEDGF 131


>gi|167038582|ref|YP_001666160.1| CMP/dCMP deaminase [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167038705|ref|YP_001661690.1| CMP/dCMP deaminase [Thermoanaerobacter sp. X514]
 gi|256751425|ref|ZP_05492303.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300913736|ref|ZP_07131053.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter sp. X561]
 gi|307723248|ref|YP_003902999.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter sp.
           X513]
 gi|320116977|ref|YP_004187136.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166852945|gb|ABY91354.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter sp. X514]
 gi|166857416|gb|ABY95824.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256749644|gb|EEU62670.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300890421|gb|EFK85566.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter sp. X561]
 gi|307580309|gb|ADN53708.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter sp.
           X513]
 gi|319930068|gb|ADV80753.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 148

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
           +FM AAL  ++    L      V  +IVK+G +IGRG     +      HAE+ A++EA 
Sbjct: 4   KFMEAALLEAKKSYQLGEV--PVGAVIVKEGQIIGRGFNQKESTNDATAHAEIIAIKEAC 61

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL--- 116
           +          + YVTLEPC      P CA  I+E  I+RV +  +      +G  +   
Sbjct: 62  KTLGSWRLDDCSMYVTLEPC------PMCAGAILEARIKRVYIGAESDKSGAAGTVVDIL 115

Query: 117 --QWLSQKGIIVDRMMESEGKIFLHAYL 142
              +L  K  +   +ME E K  L  + 
Sbjct: 116 NNSYLGSKTEVYFGIMEEECKTLLKDFF 143


>gi|300214872|gb|ADJ79288.1| Cytosine/adenosine deaminase [Lactobacillus salivarius CECT 5713]
          Length = 166

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 55/130 (42%), Gaps = 18/130 (13%)

Query: 1   MPVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHA 55
           MP++     +FM  AL  ++    +      + C+IVKDG +IGRG      +     HA
Sbjct: 1   MPLTDEQKVKFMKEALFEAKLAAKIGEV--PIGCVIVKDGKIIGRGHNLREHSQNATLHA 58

Query: 56  EVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+EEA E            +VTLEPC      P C+  II   I  V     DP   
Sbjct: 59  EMLAIEEANETVNSWRLVDTQLFVTLEPC------PMCSGAIINSRIPEVYYGASDPKAG 112

Query: 111 VSGRGLQWLS 120
             G  +  L 
Sbjct: 113 TVGTLMNLLE 122


>gi|323499761|ref|ZP_08104720.1| tRNA-specific adenosine-34 deaminase [Vibrio sinaloensis DSM 21326]
 gi|323315002|gb|EGA68054.1| tRNA-specific adenosine-34 deaminase [Vibrio sinaloensis DSM 21326]
          Length = 179

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 20/135 (14%)

Query: 31  VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++VKDG +I  G     G      HAE+Q L +AG   E  R    T YVTLEPC  
Sbjct: 32  VGAVLVKDGEIIAEGWNQSIGQNDATAHAEIQTLRKAGQVLENYRLLDTTLYVTLEPC-- 89

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII----VDR-MMESEGKI 136
               P CA  ++   ++R+V    D     +G  L     +       V+R ++E+E + 
Sbjct: 90  ----PMCAGALLHSRVKRIVFGAPDLKAGAAGTVLNLFEHQAAYHYADVERGLLETECRT 145

Query: 137 FLHAYLTRQVEKRSH 151
            L A+  R+ +++ +
Sbjct: 146 QLQAFFKRRRKEKKN 160


>gi|312142718|ref|YP_003994164.1| CMP/dCMP deaminase zinc-binding protein [Halanaerobium sp.
           'sapolanicus']
 gi|311903369|gb|ADQ13810.1| CMP/dCMP deaminase zinc-binding protein [Halanaerobium sp.
           'sapolanicus']
          Length = 149

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 17/112 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
           +FD ++M  AL  +R           +  ++V D  V+GRG            HAE+ AL
Sbjct: 2   NFDQKYMQMALAEAR--KAYQRAEVPIGAVVVCDDRVVGRGFNLREQTQDPTSHAEIIAL 59

Query: 61  EEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           +EA +E           YVTLEPC      P CA  I++  I+R+V    DP
Sbjct: 60  KEAAKEQASWRLEDCQLYVTLEPC------PMCAGAILQSRIKRLVYAAADP 105


>gi|311028951|ref|ZP_07707041.1| CMP/dCMP deaminase zinc-binding protein [Bacillus sp. m3-13]
          Length = 161

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 22/163 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  FM  A+  ++    L      +  ++V DG VI +G     T      HAE+  +++
Sbjct: 3   DEHFMKLAIEEAKKAEALKEV--PIGAVLVHDGKVISKGYNLRETTQRSITHAEIMVIDQ 60

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A E  +      AT YVTLEPC      P CA  II+  I +VV    DP    +G  + 
Sbjct: 61  ACEALQTWRLEEATLYVTLEPC------PMCAGAIIQSRIMKVVYGAKDPKAGCAGTLMN 114

Query: 118 WL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
            L     + +  +V  +ME E    L ++  +  +++    L+
Sbjct: 115 ILQDSRFNHQTEVVSGIMEEECGELLSSFFRKLRQQKKEKKLR 157


>gi|229588606|ref|YP_002870725.1| putative deaminase [Pseudomonas fluorescens SBW25]
 gi|229360472|emb|CAY47329.1| putative deaminase [Pseudomonas fluorescens SBW25]
          Length = 166

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 65/155 (41%), Gaps = 43/155 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------HAE 56
           S D  FM  AL  +     L      V  ++V+DG +IGRG      CP        HAE
Sbjct: 14  SRDQDFMREALVLAAQGAALGEV--PVGAVLVQDGEIIGRGFN----CPISGNDPSAHAE 67

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+  A +        G+T YVTLEPCS       CA  I+   I RVV    +P    
Sbjct: 68  MVAIRAAAQAISNYRLVGSTLYVTLEPCSM------CAGLIVHSRIARVVYGALEP---- 117

Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQV 146
                    + GI+     +S+G+ F   +L  +V
Sbjct: 118 ---------KAGIV-----QSQGQFFTQGFLNHRV 138


>gi|289628393|ref|ZP_06461347.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
          aesculi str. NCPPB3681]
          Length = 60

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 4  SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
          ++ D  +M+ AL  +R  +  T  NP V C+IV+DG ++G G     G PHAEV 
Sbjct: 6  AALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVH 60


>gi|260773318|ref|ZP_05882234.1| tRNA-specific adenosine-34 deaminase [Vibrio metschnikovii CIP
           69.14]
 gi|260612457|gb|EEX37660.1| tRNA-specific adenosine-34 deaminase [Vibrio metschnikovii CIP
           69.14]
          Length = 165

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 20/132 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++VKDG VI  G    +  +    HAE+Q L +AG+  +       T YVTLEPC  
Sbjct: 19  VGAVLVKDGQVIAEGWNRSIGGHDATAHAEIQVLRQAGQALQNYRLLDTTLYVTLEPC-- 76

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136
               P CA  ++   + R+V    D     +G  L   + +      +I   ++E + + 
Sbjct: 77  ----PMCAGALLHSRVARIVYGAPDLKAGAAGTVLNLFASQAAYHYAVIEKGLLEEQCRT 132

Query: 137 FLHAYLTRQVEK 148
            L A+  R+ ++
Sbjct: 133 QLQAFFKRRRQE 144


>gi|325954402|ref|YP_004238062.1| CMP/dCMP deaminase zinc-binding protein [Weeksella virosa DSM
           16922]
 gi|323437020|gb|ADX67484.1| CMP/dCMP deaminase zinc-binding protein [Weeksella virosa DSM
           16922]
          Length = 143

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 36/147 (24%)

Query: 9   RFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53
           ++  A LR +R W          V  +IVKD  +I  G   + G P              
Sbjct: 8   KYDKAYLRIAREWAKLSYCERKKVGAIIVKDRAIISDG---FNGSPSGFDNRCEDENGET 64

Query: 54  -----HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE  A+     + +  +GAT Y+TL PC        C++ I + GI RVV   D
Sbjct: 65  KWYILHAEANAILKVAASTQSCKGATLYLTLSPCK------DCSKLIHQSGINRVVYMQD 118

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMES 132
             DV     GL +L + G++++++ E 
Sbjct: 119 YKDV----EGLDFLHKAGVVIEQIPEE 141


>gi|312884996|ref|ZP_07744685.1| tRNA-specific adenosine deaminase [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367328|gb|EFP94891.1| tRNA-specific adenosine deaminase [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 156

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 20/133 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  L+VKDG +I  G    ++ +    HAE++ L +AG   E  R    T YVTLEPC  
Sbjct: 19  VGALLVKDGEIIAEGWNRSISTHDATAHAEIEVLRKAGKILENYRLNDTTLYVTLEPC-- 76

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P CA  ++   ++R+V    D     +G  L     +       I   ++E + + 
Sbjct: 77  ----PMCAGALLHSRVKRIVFGAFDKKTGAAGSVLNLFEHQAAYHYADIEKGVLEHQCRT 132

Query: 137 FLHAYLTRQVEKR 149
            L ++  R+ E++
Sbjct: 133 QLQSFFKRRREEQ 145


>gi|325130078|gb|EGC52865.1| tRNA-specific adenosine deaminase [Neisseria meningitidis
           OX99.30304]
 gi|325138115|gb|EGC60688.1| tRNA-specific adenosine deaminase [Neisseria meningitidis ES14902]
 gi|325142208|gb|EGC64629.1| tRNA-specific adenosine deaminase [Neisseria meningitidis 961-5945]
          Length = 163

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 28/138 (20%)

Query: 2   PVSSFD-----ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52
           PV++F      A FM  AL  ++    L    P V  +IV DG +I    +A+  C    
Sbjct: 6   PVAAFPPQGEMAHFMGLALEQAKLSA-LMGEIP-VGAVIVSDGKII---ASAHNTCIADC 60

Query: 53  ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
               HAE+ AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+   
Sbjct: 61  NVSRHAEINALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 114

Query: 105 DDPDVRVSGRGLQWLSQK 122
            +P    +G  +   + K
Sbjct: 115 AEPKTGAAGSIVNLFADK 132


>gi|210076069|ref|XP_505753.2| YALI0F22517p [Yarrowia lipolytica]
 gi|199424977|emb|CAG78564.2| YALI0F22517p [Yarrowia lipolytica]
          Length = 150

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 68/154 (44%), Gaps = 27/154 (17%)

Query: 7   DARFMSAALRFSRWHVGLTSTN----PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQ 58
           DA++M+ A+  +       S N    P  A L+  DG V+G+G    +       H E+ 
Sbjct: 5   DAKYMAMAIEQA-----TKSKNEGGIPIGAVLVAGDGTVLGKGHNRRIQHGSAVHHGEID 59

Query: 59  ALEEAGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           AL+ AG  A    + AT Y TL PC        C    I  G++RVV+  +D  V     
Sbjct: 60  ALQNAGRLAGKVYKDATMYTTLSPCD------MCTGACIMFGVKRVVMGENDTFV----G 109

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
           G  +L  +GI V  +   E K  +  ++T   E+
Sbjct: 110 GDDYLRARGIEVVNLKNDECKQLMDEFITAHPEE 143


>gi|160914820|ref|ZP_02077034.1| hypothetical protein EUBDOL_00828 [Eubacterium dolichum DSM 3991]
 gi|158433360|gb|EDP11649.1| hypothetical protein EUBDOL_00828 [Eubacterium dolichum DSM 3991]
          Length = 152

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 22/159 (13%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALE 61
            + +FM  A++ ++    L    P + C+IVKD  +I RG     +      HAE+ A+E
Sbjct: 1   MNEKFMVEAIKEAK-KAELIDEVP-IGCVIVKDDKIIARGHNLRESKQRSTAHAEIIAIE 58

Query: 62  EAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           +A  + +     G + YVTLEPC      P C+  I++  I  VV    DP        +
Sbjct: 59  KACRKLKSWRLEGCSLYVTLEPC------PMCSGAILQSRIEHVVYGAKDPKGGCMESCM 112

Query: 117 QWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRS 150
                KG      ++  ++E E    L  +  R+ E++S
Sbjct: 113 NMYEVKGFNHYPDVIGGVLEDECGSLLKTFFKRKREEKS 151


>gi|229826609|ref|ZP_04452678.1| hypothetical protein GCWU000182_01985 [Abiotrophia defectiva ATCC
           49176]
 gi|229789479|gb|EEP25593.1| hypothetical protein GCWU000182_01985 [Abiotrophia defectiva ATCC
           49176]
          Length = 167

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 22/168 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D ++M  A++ +     L      + C+IV DG +I RG     T +    HAE+ A+++
Sbjct: 4   DEKWMKEAIKQAEKAKKLDEV--PIGCVIVLDGKIIARGYNRRNTDHTSLAHAEMMAIKK 61

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++ R       T YVTLEPC        CA  I++  + RVV+   +     +G    
Sbjct: 62  ACKKIRDWRLEKCTLYVTLEPCQM------CAGAIVQSRVERVVIGAMNKKAGCAGSIFN 115

Query: 118 WLSQ-----KGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
            L +     K  +V  ++E+E    +  +      K+SH     A SQ
Sbjct: 116 LLEEDRFNHKAEVVRGVLENECSEMMSMFFKELRAKKSHAFCFDAASQ 163


>gi|254804815|ref|YP_003083036.1| probable cytidine deaminase [Neisseria meningitidis alpha14]
 gi|304387765|ref|ZP_07369945.1| tRNA-specific adenosine deaminase [Neisseria meningitidis ATCC
           13091]
 gi|254668357|emb|CBA05413.1| probable cytidine deaminase [Neisseria meningitidis alpha14]
 gi|254671348|emb|CBA08775.1| putative hydrolase protein [Neisseria meningitidis alpha153]
 gi|304338241|gb|EFM04371.1| tRNA-specific adenosine deaminase [Neisseria meningitidis ATCC
           13091]
 gi|319410268|emb|CBY90609.1| K01485 cytosine deaminase [Neisseria meningitidis WUE 2594]
          Length = 239

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 28/138 (20%)

Query: 2   PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52
           PV++F  +     FM  ALR +            V  +IV DG +I    +A+  C    
Sbjct: 82  PVAAFPPQEEMEHFMREALRQAEQSAA--DGEIPVGAVIVSDGKIIA---SAHNTCIADC 136

Query: 53  ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
               HAE+ AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+   
Sbjct: 137 NVSRHAEINALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 190

Query: 105 DDPDVRVSGRGLQWLSQK 122
            +P    +G  +   + K
Sbjct: 191 AEPKTGAAGSIVNLFADK 208


>gi|195952447|ref|YP_002120737.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Hydrogenobaculum
           sp. Y04AAS1]
 gi|195932059|gb|ACG56759.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Hydrogenobaculum
           sp. Y04AAS1]
          Length = 222

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 7/148 (4%)

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           +H +RA+ DAI+VG  T+  D+P LT R   ++  +P+R+I      +  D+ ++     
Sbjct: 44  LHEVRAKVDAIMVGCETIRTDNPSLTVRY--VKGKNPIRVIPCSTANIPFDANVLSKD-- 99

Query: 243 APVIIVTENDDPVLAL-AFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           A  II T    P   +    +  I ++       D + LL  L  + + SL+VEGG+++ 
Sbjct: 100 AHTIIATTKRAPEEKIKKLTEMGIEVLVTGDYLVDFELLLKKLREKDIKSLMVEGGSSIN 159

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS 327
                 + V+ I +    +++G   +P+
Sbjct: 160 WELCKLKAVNEIRIIHLPVIVGGENVPT 187


>gi|298293688|ref|YP_003695627.1| bifunctional deaminase-reductase domain protein [Starkeya novella
           DSM 506]
 gi|296930199|gb|ADH91008.1| bifunctional deaminase-reductase domain protein [Starkeya novella
           DSM 506]
          Length = 241

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 9/174 (5%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
           +  ++  S D  I      S  I G    + +H LRA +D ++VG+GTVLADDP+LT R 
Sbjct: 27  VIAQLGQSLDGRIATPTGKSRDINGCCGMDHLHRLRAIADVVVVGVGTVLADDPQLTTRR 86

Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD--PVLALAFRKKNINIIY 269
             +   SP R ++DP  + S  S+ ++       I+ +EN    P         +   I+
Sbjct: 87  --VPGRSPARAVIDPSGRSSRQSRWLREDGCR-RIVFSENAHGWPDEVERIGTDHDPAIF 143

Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
               +  +L+  L  RG  ++LVEGGA+    FI++ +VD + +  S I++G G
Sbjct: 144 ----EPARLIAALAARGHRTVLVEGGASTISRFIDAGVVDRLHVCLSPIILGSG 193


>gi|226309631|ref|YP_002769525.1| tRNA specific adenosine deaminase [Brevibacillus brevis NBRC
           100599]
 gi|226092579|dbj|BAH41021.1| putative tRNA specific adenosine deaminase [Brevibacillus brevis
           NBRC 100599]
          Length = 160

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 17/121 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
           +M  A+  +R    +      +  +IV+DG ++GRG     T      HAE+ A+ EA E
Sbjct: 10  YMKQAMEEARKAAAIGEV--PIGAVIVRDGEIVGRGYNLRETQKDPTLHAELIAIREASE 67

Query: 66  EARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G      T YVTLEPC      P CA  I++  I +VV    DP    +G  +  L+
Sbjct: 68  RLGGWRLIGCTLYVTLEPC------PMCAGAIVQSRIEKVVYGARDPKAGCAGTLMNLLA 121

Query: 121 Q 121
           +
Sbjct: 122 E 122


>gi|153837700|ref|ZP_01990367.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus AQ3810]
 gi|260366298|ref|ZP_05778754.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus K5030]
 gi|260876398|ref|ZP_05888753.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus AN-5034]
 gi|308095607|ref|ZP_05907165.2| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus
           Peru-466]
 gi|308126068|ref|ZP_05907632.2| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus AQ4037]
 gi|149748895|gb|EDM59726.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus AQ3810]
 gi|308086905|gb|EFO36600.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus
           Peru-466]
 gi|308092990|gb|EFO42685.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus AN-5034]
 gi|308106632|gb|EFO44172.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus AQ4037]
 gi|308112714|gb|EFO50254.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus K5030]
          Length = 174

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 69/165 (41%), Gaps = 29/165 (17%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM  AL  +     L    P V  ++VKDG VI  G    + ++    HAE+Q L  
Sbjct: 10  DEIFMRRALALAE-QAELEGEVP-VGAVLVKDGEVIAEGWNRSICSHDATAHAEIQTLRN 67

Query: 63  AG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL- 116
           AG   E  R    T YVTLEPC      P CA  ++   ++RVV     PD++    G  
Sbjct: 68  AGAVLENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVFGA--PDLKAGAAGTV 119

Query: 117 ------QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
                 Q       +   ++E E +  L A+  R   +R  I  K
Sbjct: 120 LNLFESQAAYHYATVEKGLLEDECREQLQAFFKR---RRKEIKAK 161


>gi|293399195|ref|ZP_06643360.1| cytosine deaminase [Neisseria gonorrhoeae F62]
 gi|291610609|gb|EFF39719.1| cytosine deaminase [Neisseria gonorrhoeae F62]
          Length = 239

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 28/138 (20%)

Query: 2   PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52
           PV++F  +     FM  ALR +            V  +IV DG +I    +A+  C    
Sbjct: 82  PVAAFPPQEEMGYFMREALRQAEQSAA--DGEIPVGAVIVSDGKIIA---SAHNTCIADC 136

Query: 53  ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
               HAE+ AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+   
Sbjct: 137 NVSRHAEINALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 190

Query: 105 DDPDVRVSGRGLQWLSQK 122
            +P    +G  +   + K
Sbjct: 191 TEPKTGAAGSIVNLFADK 208


>gi|302552478|ref|ZP_07304820.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Streptomyces
           viridochromogenes DSM 40736]
 gi|302470096|gb|EFL33189.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Streptomyces
           viridochromogenes DSM 40736]
          Length = 189

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 13/186 (6%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
           ++ L  AVS D  +   G   + ++     ++V  +RA  DAILVG GT+ AD+P L   
Sbjct: 5   YVLLSAAVSLDGYLDDTGPERLLLSSPADFDRVDEVRASVDAILVGAGTIRADNPRLLVN 64

Query: 211 ---------LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
                      GL E+ P+++ +     L  +++   T      ++ T ++    A A  
Sbjct: 65  SPGRRAARTAAGLPEY-PLKVTVSGTGDLDPEARFWHTG--GEKVLYTTDEGAERARARG 121

Query: 262 KKNINIIYCDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
                +      D + LLT L   RGV  L+VEGG  +    +   L D + L  + + +
Sbjct: 122 LATDVVPLGAGLDWRSLLTHLHDVRGVRRLMVEGGGLIHTQLLTQGLADELQLVLAPLFV 181

Query: 321 GEGGIP 326
           G+   P
Sbjct: 182 GDPAAP 187


>gi|94501251|ref|ZP_01307773.1| cytidine/deoxycytidylate deaminase family protein [Oceanobacter sp.
           RED65]
 gi|94426678|gb|EAT11664.1| cytidine/deoxycytidylate deaminase family protein [Oceanobacter sp.
           RED65]
          Length = 164

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 67/157 (42%), Gaps = 35/157 (22%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGC---PHAEVQALEE 62
           D  FM+ A++ ++    L      V  ++V DG VIG G      GC    HAEV AL +
Sbjct: 7   DEHFMALAIQQAKKADALNEV--PVGAVVVLDGEVIGEGYNQPISGCDPTAHAEVMALRQ 64

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +         A  YVT+EPC+       CA  I+   IRR+V    +P          
Sbjct: 65  AAKNVSNYRLVNADLYVTIEPCTM------CAGAIVHSRIRRLVYGATEP---------- 108

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL 154
              + G+I     ES+  I   +Y   +VE  S I L
Sbjct: 109 ---KAGVI-----ESQQTILTQSYFNHRVEVVSGILL 137


>gi|15612596|ref|NP_240899.1| Cu binding protein (Mn oxidation) [Bacillus halodurans C-125]
 gi|10172645|dbj|BAB03752.1| Cu binding protein (Mn oxidation) [Bacillus halodurans C-125]
          Length = 159

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 20/135 (14%)

Query: 31  VACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           +  +IVKDG+V+ +             HAE+ A+E+A +        G T YVTLEPC  
Sbjct: 27  IGAVIVKDGVVVAKAYNLREINQQAIAHAELLAIEKACKALGTWRLTGCTLYVTLEPC-- 84

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGKI 136
               P CA  I++  I RVV    DP    +G  +  L++     + I+   ++E E   
Sbjct: 85  ----PMCAGAIVQSRIERVVYGATDPKAGCAGTLMNLLNEERFNHQTIVESGVLEEECSQ 140

Query: 137 FLHAYLTRQVEKRSH 151
            L A+  +  E++  
Sbjct: 141 RLTAFFRKLRERKKR 155


>gi|90962204|ref|YP_536120.1| cytosine/adenosine deaminase [Lactobacillus salivarius UCC118]
 gi|301300462|ref|ZP_07206662.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|90821398|gb|ABE00037.1| Cytosine/adenosine deaminase [Lactobacillus salivarius UCC118]
 gi|300851959|gb|EFK79643.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 166

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 51/121 (42%), Gaps = 17/121 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAG 64
           +FM  AL  ++    +      + C+IVKDG +IGRG      +     HAE+ A+EEA 
Sbjct: 10  KFMKEALFEAKLAAKIGEV--PIGCVIVKDGKIIGRGHNLREHSQNATLHAEMLAIEEAN 67

Query: 65  EEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           E            +VTLEPC      P C+  II   I  V     DP     G  +  L
Sbjct: 68  ETVNSWRLVDTQLFVTLEPC------PMCSGAIINSRIPEVYYGASDPKAGTVGTLMNLL 121

Query: 120 S 120
            
Sbjct: 122 E 122


>gi|82702354|ref|YP_411920.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Nitrosospira multiformis ATCC 25196]
 gi|82410419|gb|ABB74528.1| tRNA-adenosine deaminase [Nitrosospira multiformis ATCC 25196]
          Length = 163

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 67/166 (40%), Gaps = 30/166 (18%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------H 54
           ++S DA FM  AL  S       +    V  ++V++G ++GRG      CP        H
Sbjct: 1   MNSSDAGFMHVALELSAQ--AEQAGEVPVGAIVVRNGTIVGRGYN----CPISTSDPTAH 54

Query: 55  AEVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AEV AL +AG           T YVTLEPC+       C   I    I R+V    DP  
Sbjct: 55  AEVMALRDAGRHLGNYRLGDCTLYVTLEPCAM------CMGAIFHARIARLVYGAADPKT 108

Query: 110 RVSGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
              G  +       L+    +   ++  EG   L  +  ++ E R+
Sbjct: 109 GACGSVINLSAELRLNHHLQVTRGVLAEEGGYKLKQFFAKRREART 154


>gi|239998824|ref|ZP_04718748.1| putative cytosine deaminase [Neisseria gonorrhoeae 35/02]
 gi|240014261|ref|ZP_04721174.1| putative cytosine deaminase [Neisseria gonorrhoeae DGI18]
 gi|240016697|ref|ZP_04723237.1| putative cytosine deaminase [Neisseria gonorrhoeae FA6140]
 gi|240121824|ref|ZP_04734786.1| putative cytosine deaminase [Neisseria gonorrhoeae PID24-1]
 gi|260440688|ref|ZP_05794504.1| putative cytosine deaminase [Neisseria gonorrhoeae DGI2]
 gi|268594667|ref|ZP_06128834.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae
           35/02]
 gi|291043998|ref|ZP_06569714.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae DGI2]
 gi|268548056|gb|EEZ43474.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae
           35/02]
 gi|291012461|gb|EFE04450.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae DGI2]
 gi|317164113|gb|ADV07654.1| putative cytosine deaminase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 239

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 28/138 (20%)

Query: 2   PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52
           PV++F  +     FM  ALR +            V  +IV DG +I    +A+  C    
Sbjct: 82  PVAAFPPQEEMGYFMREALRQAEQSAA--DGEIPVGAVIVSDGKIIA---SAHNTCIADC 136

Query: 53  ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
               HAE+ AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+   
Sbjct: 137 NVSRHAEINALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 190

Query: 105 DDPDVRVSGRGLQWLSQK 122
            +P    +G  +   + K
Sbjct: 191 AEPKTGAAGSIVNLFADK 208


>gi|294102217|ref|YP_003554075.1| CMP/dCMP deaminase zinc-binding protein [Aminobacterium colombiense
           DSM 12261]
 gi|293617197|gb|ADE57351.1| CMP/dCMP deaminase zinc-binding protein [Aminobacterium colombiense
           DSM 12261]
          Length = 156

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 54/111 (48%), Gaps = 15/111 (13%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--HAEVQALE 61
           S  D  FM+ AL  +R           VA L+V++  VIG+G  +    P  HAE+ A+ 
Sbjct: 4   SDTDIFFMNMALDEAR--KAAEHGEVPVAALVVRNNEVIGKGSNSKHLDPTAHAEIIAIR 61

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           EA E       RG+T YVTLEPC      P CA  I+   I+ +V    DP
Sbjct: 62  EATERLGTWNLRGSTLYVTLEPC------PMCAGAIVLSRIKCLVYGAADP 106


>gi|325928669|ref|ZP_08189845.1| tRNA-adenosine deaminase [Xanthomonas perforans 91-118]
 gi|325540965|gb|EGD12531.1| tRNA-adenosine deaminase [Xanthomonas perforans 91-118]
          Length = 171

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 15/121 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57
           P ++ D  +M  AL+ +          P  A L+   G V+G G    + ++    HAE+
Sbjct: 12  PYAAIDEHWMRHALQLAERAERDYDEIPVGALLVDAQGNVLGEGWNFNIASHDPSAHAEI 71

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+ EAG         G T YVTLEPC+       CA  +I   I RVV    DP     
Sbjct: 72  VAMREAGRRLANHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGAC 125

Query: 113 G 113
           G
Sbjct: 126 G 126


>gi|59801336|ref|YP_208048.1| putative cytosine deaminase [Neisseria gonorrhoeae FA 1090]
 gi|194098422|ref|YP_002001481.1| putative cytosine deaminase [Neisseria gonorrhoeae NCCP11945]
 gi|240080887|ref|ZP_04725430.1| putative cytosine deaminase [Neisseria gonorrhoeae FA19]
 gi|240117796|ref|ZP_04731858.1| putative cytosine deaminase [Neisseria gonorrhoeae PID1]
 gi|240125599|ref|ZP_04738485.1| putative cytosine deaminase [Neisseria gonorrhoeae SK-92-679]
 gi|268597004|ref|ZP_06131171.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae FA19]
 gi|268603495|ref|ZP_06137662.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae PID1]
 gi|268684187|ref|ZP_06151049.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae
           SK-92-679]
 gi|59718231|gb|AAW89636.1| putative cytosine deaminase [Neisseria gonorrhoeae FA 1090]
 gi|193933712|gb|ACF29536.1| putative cytosine deaminase [Neisseria gonorrhoeae NCCP11945]
 gi|268550792|gb|EEZ45811.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae FA19]
 gi|268587626|gb|EEZ52302.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae PID1]
 gi|268624471|gb|EEZ56871.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae
           SK-92-679]
          Length = 239

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 28/138 (20%)

Query: 2   PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52
           PV++F  +     FM  ALR +            V  +IV DG +I    +A+  C    
Sbjct: 82  PVAAFPPQEEMGYFMREALRQAEQSAA--DGEIPVGAVIVSDGKII---TSAHNTCIADC 136

Query: 53  ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
               HAE+ AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+   
Sbjct: 137 NVSRHAEINALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 190

Query: 105 DDPDVRVSGRGLQWLSQK 122
            +P    +G  +   + K
Sbjct: 191 AEPKTGAAGSIVNLFADK 208


>gi|262281785|ref|ZP_06059554.1| cytidine/deoxycytidylate deaminase [Streptococcus sp. 2_1_36FAA]
 gi|262262239|gb|EEY80936.1| cytidine/deoxycytidylate deaminase [Streptococcus sp. 2_1_36FAA]
          Length = 162

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
          FM  AL+ +R  + L +    + C+IV+DG +IGRG  A         HAE+ A+EEA +
Sbjct: 18 FMLEALKEAR--IALENDEIPIGCVIVRDGQIIGRGHNAREELQRAVMHAEIMAIEEANQ 75

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 76 HENSWRLLDTTLFVTIEPC 94


>gi|294625308|ref|ZP_06703945.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665062|ref|ZP_06730368.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292600377|gb|EFF44477.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292605180|gb|EFF48525.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 169

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 15/121 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57
           P ++ D  +M  AL+ +          P  A L+   G V+G G    + ++    HAE+
Sbjct: 10  PHAAIDVHWMQHALQLAERAERDYDEIPVGAVLVDAQGNVLGEGWNFNIASHDPSAHAEI 69

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+ EAG         G T YVTLEPC+       CA  +I   I RVV    DP     
Sbjct: 70  VAMREAGRRLANHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGAC 123

Query: 113 G 113
           G
Sbjct: 124 G 124


>gi|240112750|ref|ZP_04727240.1| putative cytosine deaminase [Neisseria gonorrhoeae MS11]
 gi|240115501|ref|ZP_04729563.1| putative cytosine deaminase [Neisseria gonorrhoeae PID18]
 gi|240123350|ref|ZP_04736306.1| putative cytosine deaminase [Neisseria gonorrhoeae PID332]
 gi|240128054|ref|ZP_04740715.1| putative cytosine deaminase [Neisseria gonorrhoeae SK-93-1035]
 gi|254493609|ref|ZP_05106780.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae 1291]
 gi|268598817|ref|ZP_06132984.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae MS11]
 gi|268601174|ref|ZP_06135341.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae
           PID18]
 gi|268681975|ref|ZP_06148837.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae
           PID332]
 gi|268686443|ref|ZP_06153305.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|226512649|gb|EEH61994.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae 1291]
 gi|268582948|gb|EEZ47624.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae MS11]
 gi|268585305|gb|EEZ49981.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae
           PID18]
 gi|268622259|gb|EEZ54659.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae
           PID332]
 gi|268626727|gb|EEZ59127.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 239

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 28/138 (20%)

Query: 2   PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52
           PV++F  +     FM  ALR +            V  +IV DG +I    +A+  C    
Sbjct: 82  PVAAFPPQEEMGYFMREALRQAEQSAA--DGEIPVGAVIVSDGKIIA---SAHNTCIADC 136

Query: 53  ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
               HAE+ AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+   
Sbjct: 137 NVSRHAEINALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 190

Query: 105 DDPDVRVSGRGLQWLSQK 122
            +P    +G  +   + K
Sbjct: 191 AEPKTGAAGSIVNLFADK 208


>gi|167464544|ref|ZP_02329633.1| possible nucleoside deaminase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 152

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 15/100 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           +  +IV +G +IGRG     T+     HAE+ A+ EA E  R       T YVTLEPC  
Sbjct: 26  IGAVIVHEGRIIGRGHNLRETSMDPTAHAEMIAIREASEYLRAWRLLNCTLYVTLEPC-- 83

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
               P CA  I++  I RVV    DP    +G  +  L +
Sbjct: 84  ----PMCAGAIVQSRILRVVYGTIDPKAGCAGTLMNLLQE 119


>gi|158314624|ref|YP_001507132.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EAN1pec]
 gi|158110029|gb|ABW12226.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EAN1pec]
          Length = 150

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 6/96 (6%)

Query: 54  HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDV 109
           HAE  AL   + A      AT Y TLEPCS     P  C Q I+E  I RVV+   +P +
Sbjct: 54  HAEESALAKIDPADPRLATATIYSTLEPCSQRKSRPRTCTQLILEAKIPRVVIAWREPSL 113

Query: 110 RVSG-RGLQWLSQKGIIVDRMME-SEGKIFLHAYLT 143
            V+  +G + L+Q G+ V  + E +E    ++A+L+
Sbjct: 114 FVADCQGYELLTQAGVTVAELPELAEQARAMNAHLS 149


>gi|289208457|ref|YP_003460523.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thioalkalivibrio
           sp. K90mix]
 gi|288944088|gb|ADC71787.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thioalkalivibrio
           sp. K90mix]
          Length = 262

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 84/181 (46%), Gaps = 6/181 (3%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           +E  S    ++  S D  I      S  +TG      +H LRA  D ++VG GTV+ADDP
Sbjct: 46  IEAESITVAQLGQSLDGRIATQSGHSQYVTGPEDIEHLHRLRALVDGVVVGAGTVVADDP 105

Query: 206 ELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
            LT R   G+    P+R+ILDP  ++  ++++ +   +  +++  E   P       +  
Sbjct: 106 RLTVRKAEGVH---PVRVILDPDGRIQPNARVFQDGEVKTLVVHAEGHGPCDMPDNVECM 162

Query: 265 INIIYCDCRDLKKLL--TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
           +  +  D R     L   +    G+  LLVEGG      F+ S  +D + L  + ++IG 
Sbjct: 163 VMPVDADGRFAPPALRDRLAAEHGLHRLLVEGGGRTVSRFLASDTLDRLHLTIAPMLIGS 222

Query: 323 G 323
           G
Sbjct: 223 G 223


>gi|297543592|ref|YP_003675894.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296841367|gb|ADH59883.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 148

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAG 64
           +FM AA+  +     L      V  +IVKD  +IGRG            HAE+ A++EA 
Sbjct: 4   KFMKAAILEANKSYQLREV--PVGAVIVKDDQIIGRGFNQKEATNDATAHAEIMAIKEAC 61

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           +          + YVTLEPC      P CA  I+E  I+RV +  +      +G  +  L
Sbjct: 62  KTLGSWRLDDCSMYVTLEPC------PMCAGAILEARIKRVYIGTESDKSGAAGTVINLL 115

Query: 120 SQ-----KGIIVDRMMESEGKIFLHAYL 142
           +      K  +   +ME E K+ L  + 
Sbjct: 116 NNPDLGSKTEVYFGIMEDECKMLLENFF 143


>gi|86739889|ref|YP_480289.1| bifunctional deaminase-reductase-like protein [Frankia sp. CcI3]
 gi|86566751|gb|ABD10560.1| bifunctional deaminase-reductase-like [Frankia sp. CcI3]
          Length = 283

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 38/230 (16%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           V  R ++    A+S D  I  +    + ++     ++V  +RA  DAILVG  TV  D+P
Sbjct: 27  VAGRPYVICSCAMSLDGHIDDSSAERMILSSAADLDRVDEVRAGCDAILVGAATVRRDNP 86

Query: 206 ELTCRLN--------GLQEHSPMRIIL------DPHFKL----SLDSKIIKTALLAPVII 247
            L  R            +  +P++++L      DP  +L     +++ I + A  +  I 
Sbjct: 87  RLAVRAQHRRVAREAAGRPPTPIKVVLSGGGDLDPSARLFTADPVETIIYRRAGSSLAIA 146

Query: 248 -VTENDDPV----------------LALAFRKKNINIIYCDCR---DLKKLLTILVGRGV 287
             T + +P                  A A R   + ++    R   ++  +LT L  RGV
Sbjct: 147 EPTSSPEPTSSPEPSTPQSAPAAIRTAPATRAARVILVELPGRPRVEVAAILTDLARRGV 206

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
             LLVEGG ++  +F+ + LVD + L  +   +GE   P+ +  G    +
Sbjct: 207 RRLLVEGGTSLHTAFLTAGLVDELHLTVAPFFVGERDAPTFVGPGVFPND 256


>gi|330936949|gb|EGH41059.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 169

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 67/155 (43%), Gaps = 43/155 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------HAE 56
           S D  FM  AL  +     L      V  ++V++G +IGRG      CP        HAE
Sbjct: 10  SNDQYFMREALALASQGALLGEV--PVGAVVVQNGEIIGRGYN----CPISGSDPSAHAE 63

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ +A +        G+T YVTLEPCS       CA  I+   + RVV    +P    
Sbjct: 64  MVAIRDAAKALDNYRLPGSTLYVTLEPCSM------CAGLIVHSRVARVVYGALEP---- 113

Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQV 146
                    + GI+     +S+G+ F  A+L  +V
Sbjct: 114 ---------KAGIV-----QSQGQFFSQAFLNHRV 134


>gi|322383121|ref|ZP_08056948.1| tRNA specific adenosine deaminase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321152783|gb|EFX45409.1| tRNA specific adenosine deaminase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 157

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 15/100 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           +  +IV +G +IGRG     T+     HAE+ A+ EA E  R       T YVTLEPC  
Sbjct: 31  IGAVIVHEGRIIGRGHNLRETSMDPTAHAEMIAIREASEYLRAWRLLNCTLYVTLEPC-- 88

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
               P CA  I++  I RVV    DP    +G  +  L +
Sbjct: 89  ----PMCAGAIVQSRILRVVYGTIDPKAGCAGTLMNLLQE 124


>gi|325144274|gb|EGC66579.1| tRNA-specific adenosine deaminase [Neisseria meningitidis
           M01-240013]
          Length = 239

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 28/138 (20%)

Query: 2   PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--- 53
           PV++F  +     FM  ALR +            V  +IV DG +I    +A+  C    
Sbjct: 82  PVAAFPPQEEMEHFMREALRQAEQSAA--DGEIPVGAVIVSDGKIIA---SAHNTCIADC 136

Query: 54  ----HAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
               HAE+ AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+   
Sbjct: 137 NVSCHAEINALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 190

Query: 105 DDPDVRVSGRGLQWLSQK 122
            +P    +G  +   + K
Sbjct: 191 AEPKTGAAGSIVNLFADK 208


>gi|21242782|ref|NP_642364.1| hypothetical protein XAC2038 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21108264|gb|AAM36900.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 169

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 15/121 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57
           P ++ D  +M  AL+ +          P  A L+   G V+G G    + ++    HAE+
Sbjct: 10  PHAAIDVHWMQHALQLAERAERDYDEIPVGAVLVDAQGNVLGEGWNFNIASHDPSAHAEI 69

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+ EAG         G T YVTLEPC+       CA  +I   I RVV    DP     
Sbjct: 70  VAMREAGRRLANHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGAC 123

Query: 113 G 113
           G
Sbjct: 124 G 124


>gi|291549089|emb|CBL25351.1| Cytosine/adenosine deaminases [Ruminococcus torques L2-14]
          Length = 163

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 17/124 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
           + D ++M AAL+ +     L  T   + C+IV +  +I RG     T      HAEV A+
Sbjct: 2   TTDEKYMRAALKQAEKAYNLGET--PIGCVIVHEDKIIARGYNRRNTDKNPLAHAEVAAI 59

Query: 61  EEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           ++A ++         T YVTLEPC        CA  I++  I RVVV   +P    +G  
Sbjct: 60  KKASKKLGDWRLEECTLYVTLEPCQM------CAGAIVQSRIPRVVVGCMNPKAGCTGSI 113

Query: 116 LQWL 119
           L  L
Sbjct: 114 LNLL 117


>gi|309792074|ref|ZP_07686548.1| deaminase-reductase domain-containing protein [Oscillochloris
           trichoides DG6]
 gi|308225881|gb|EFO79635.1| deaminase-reductase domain-containing protein [Oscillochloris
           trichoides DG6]
          Length = 286

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 79/199 (39%), Gaps = 26/199 (13%)

Query: 149 RSHITLKIAVSQDNMI-----GMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV--- 200
           R +      VS D  I     G +G G V          + L+RA++DAIL G GT+   
Sbjct: 46  RPYTFTNFVVSHDGRISFAEPGRSGGGPVSRHSPYDTWLMGLIRARADAILTGAGTLQVA 105

Query: 201 ----------LADDPELTCRLNGLQEHSPMR--IILDPHFKLSLDSKIIKTALLAPVIIV 248
                      A D      L   +  +P+   +++     L  D+  ++     PV+I 
Sbjct: 106 RRHLWTPTQAFASDAHFFADLRMAEGRTPLPLLVVVTNRGDLPPDAAALR-GDPQPVLIA 164

Query: 249 TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGR-GVTSLLVEGGAAVAHSFI 303
           T       A A   +   + Y   R    DL  L   L  R GV SLL EGGA +  + +
Sbjct: 165 TTPAGATRAYAHLGERPGVRYHISRGETVDLIGLCADLRQRMGVRSLLSEGGALIYGALV 224

Query: 304 NSRLVDSIILYRSQIVIGE 322
             RLVD   L  S I+IG 
Sbjct: 225 AQRLVDETFLTNSPIIIGS 243


>gi|261212078|ref|ZP_05926364.1| tRNA-specific adenosine-34 deaminase [Vibrio sp. RC341]
 gi|260838686|gb|EEX65337.1| tRNA-specific adenosine-34 deaminase [Vibrio sp. RC341]
          Length = 170

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 71/172 (41%), Gaps = 28/172 (16%)

Query: 1   MPVSSF---DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCP 53
           MP S F   D +FM  A+  +            V  ++V+DG +I  G    +T +    
Sbjct: 1   MPESQFSPQDEQFMRRAITLAAQ--AEAQGEVPVGAVLVRDGEIIAEGWNCSITHHDATA 58

Query: 54  HAEVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE++ + +AG           T YVTLEPC      P CA  ++   ++R+V    D  
Sbjct: 59  HAEIEVIRKAGNVLNNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLK 112

Query: 109 VRVSGRGLQWLSQK-----GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
              +G  +   S +       +   ++E E +  L A+  R   +R  I  K
Sbjct: 113 AGAAGTVMDLFSSQAAYHYATVEKGLLEEECRTQLQAFFQR---RRKEIKAK 161


>gi|308389629|gb|ADO31949.1| cytidine and deoxycytidylate deaminase family protein [Neisseria
           meningitidis alpha710]
          Length = 239

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 28/138 (20%)

Query: 2   PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--- 53
           PV++F  +     FM  ALR +            V  +IV DG +I    +A+  C    
Sbjct: 82  PVAAFPPQEEMEHFMREALRQAEQSAA--DGEIPVGAVIVSDGKIIA---SAHNTCIADC 136

Query: 54  ----HAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
               HAE+ AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+   
Sbjct: 137 NVSCHAEINALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 190

Query: 105 DDPDVRVSGRGLQWLSQK 122
            +P    +G  +   + K
Sbjct: 191 AEPKTGAAGSIVNLFADK 208


>gi|34498926|ref|NP_903141.1| cytidine deaminase [Chromobacterium violaceum ATCC 12472]
 gi|34104775|gb|AAQ61132.1| probable cytidine deaminase [Chromobacterium violaceum ATCC 12472]
          Length = 244

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 44/92 (47%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           V  L+VKDG +IGRG    +  +    HAE+QAL +A    R     G   YVTLEPC  
Sbjct: 115 VGALVVKDGEIIGRGYNQPIGRHDPSAHAEMQALRDAAARLRNYRLDGCDLYVTLEPC-- 172

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
               P C+  I+   + RV+    D     +G
Sbjct: 173 ----PMCSGAILHARVARVIYGAADAKTGAAG 200


>gi|319946112|ref|ZP_08020360.1| tRNA-specific adenosine deaminase [Streptococcus australis ATCC
          700641]
 gi|319747758|gb|EFW00004.1| tRNA-specific adenosine deaminase [Streptococcus australis ATCC
          700641]
          Length = 170

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
          FM  AL+ +   + L      + C+IVKDG +IGRG  A         HAEV A+EEA +
Sbjct: 12 FMREALKEA--EIALAHEEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEVMAIEEANQ 69

Query: 66 EARG-----ATAYVTLEPC 79
          + +       T +VT+EPC
Sbjct: 70 KEKSWRLLDTTLFVTIEPC 88


>gi|6572098|emb|CAB63082.1| riboflavin-specific deaminase [Bartonella bacilliformis]
          Length = 107

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
           +L +L   G+ S+L+EGGA     F+N+  VD +I + + +++GE  I +P  E YL + 
Sbjct: 22  ILQLLCQLGINSVLLEGGAETGEKFLNAGCVDHLICFYASVILGENRIKAPYFETYLSE- 80

Query: 338 FMCVRRDYFGSDVCLEYIGKNLCLQEL 364
           F  +      +D    +  K LC Q L
Sbjct: 81  FNEIETKMLENDRLRRWRRKILCSQGL 107


>gi|70732252|ref|YP_262008.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           fluorescens Pf-5]
 gi|68346551|gb|AAY94157.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           fluorescens Pf-5]
          Length = 162

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 57/129 (44%), Gaps = 41/129 (31%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP--------HAEVQALEEAGEEAR-----GATAYVTLE 77
           V  ++V DG VIGRG      CP        HAE+ A+ EA +        G+T YVTLE
Sbjct: 37  VGAVLVLDGQVIGRGYN----CPISGSDPSAHAEMVAIREAAQAVSNYRLPGSTLYVTLE 92

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
           PCS       CA  I+   I RVV    +P             + GI+     +S+G+ F
Sbjct: 93  PCSM------CAGLIVHSRIARVVYGALEP-------------KAGIV-----QSQGQFF 128

Query: 138 LHAYLTRQV 146
              +L  +V
Sbjct: 129 TQGFLNHRV 137


>gi|325479006|gb|EGC82107.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 169

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 52/113 (46%), Gaps = 17/113 (15%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG---CPHAEVQA 59
           S  D  FM  A+  +R         P V  +IV  G +IGRG    Y G     HAE+ A
Sbjct: 13  SKMDMFFMQEAISEARL-ARFVEEVP-VGAVIVYKGEIIGRGHNYTYKGKSALKHAEIMA 70

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           ++EA E          T YVT+EPCS       CA  II   I R+V+ + DP
Sbjct: 71  IKEASEYMDDFRLEECTMYVTMEPCSM------CAGAIINSRIDRLVIGIRDP 117


>gi|325128107|gb|EGC51002.1| tRNA-specific adenosine deaminase [Neisseria meningitidis N1568]
          Length = 163

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 28/138 (20%)

Query: 2   PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52
           PV++F ++     FM  ALR +            V  +IV DG +I    +A+  C    
Sbjct: 6   PVAAFPSQEEMEHFMREALRQAEQSAA--DGEIPVGAVIVSDGKIIA---SAHNTCIADC 60

Query: 53  ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
               HAE+ AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+   
Sbjct: 61  NVSRHAEINALAQAGREIQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 114

Query: 105 DDPDVRVSGRGLQWLSQK 122
            +P    +G  +   + K
Sbjct: 115 AEPKTGAAGSIVNLFADK 132


>gi|289665842|ref|ZP_06487423.1| hypothetical protein XcampvN_22891 [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 174

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 15/121 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57
           P S+ D  +M  AL  +          P  A ++  +G V+G G    + ++    HAE+
Sbjct: 15  PHSAIDLHWMQHALHLAERAERDYDEIPVGALVVDAEGNVLGEGWNFNIASHDPSAHAEI 74

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+ EAG         G T YVTLEPC+       CA  +I   I RVV    DP     
Sbjct: 75  VAMREAGRRLANHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGAC 128

Query: 113 G 113
           G
Sbjct: 129 G 129


>gi|288803361|ref|ZP_06408794.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
           melaninogenica D18]
 gi|288334181|gb|EFC72623.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
           melaninogenica D18]
          Length = 166

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 66/154 (42%), Gaps = 40/154 (25%)

Query: 4   SSFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------- 53
           ++ D R+    LR +R W          V  L+VKD ++I  G   Y G P         
Sbjct: 22  AAVDYRY----LRMARIWAENSYCKRRQVGALVVKDKMIISDG---YNGTPSGFENICED 74

Query: 54  ----------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                     HAE  A   L  +G  + G+T YVT  PC        CA+ II+ GIRRV
Sbjct: 75  ESGVTKPYVLHAEANAITKLARSGNNSEGSTLYVTASPCIE------CAKLIIQAGIRRV 128

Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
           V        R++  G+  L++ G+ V+ +   +G
Sbjct: 129 VYA---EKYRLTD-GIDLLTRAGVEVEYISLEDG 158


>gi|240145078|ref|ZP_04743679.1| tRNA-specific adenosine deaminase [Roseburia intestinalis L1-82]
 gi|257202749|gb|EEV01034.1| tRNA-specific adenosine deaminase [Roseburia intestinalis L1-82]
 gi|291537828|emb|CBL10939.1| Cytosine/adenosine deaminases [Roseburia intestinalis XB6B4]
          Length = 154

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 17/123 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D ++M AA+R ++    L      + C+IV++  +I RG     T      HAE+ A+ +
Sbjct: 4   DEKYMKAAIRQAKKAYALDEV--PIGCVIVQNDKIIARGYNRRNTEGNTLAHAELTAIRK 61

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++         T YVTLEPC        CA  I++  +++VV+   +P    +G  L 
Sbjct: 62  ASKKTGDWRLEDCTMYVTLEPCQM------CAGAIVQSRMKKVVIGSMNPKAGCAGSVLN 115

Query: 118 WLS 120
            L 
Sbjct: 116 LLQ 118


>gi|251794142|ref|YP_003008873.1| CMP/dCMP deaminase zinc-binding [Paenibacillus sp. JDR-2]
 gi|247541768|gb|ACS98786.1| CMP/dCMP deaminase zinc-binding [Paenibacillus sp. JDR-2]
          Length = 156

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 17/101 (16%)

Query: 31  VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEARGA------TAYVTLEPCS 80
           +  ++VK+G V+GRG     T +    HAE+ A+ EA E   GA      T YVTLEPC 
Sbjct: 29  IGAILVKNGEVVGRGYNLRETNHDPTAHAEMVAIREACERL-GAWRLLDCTLYVTLEPC- 86

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                P CA  I++  ++RVV    DP    +G  +  L +
Sbjct: 87  -----PMCAGAIVQSRVKRVVYGTGDPKAGCAGTLMNLLQE 122


>gi|197335350|ref|YP_002155408.1| tRNA-specific adenosine deaminase [Vibrio fischeri MJ11]
 gi|197316840|gb|ACH66287.1| tRNA-specific adenosine deaminase [Vibrio fischeri MJ11]
          Length = 174

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  +IV D  +IG G    ++ +    HAE+ A+++AG +        AT YVTLEPC  
Sbjct: 32  VGAVIVLDDEIIGEGWNRSISTHDATAHAEMMAIKQAGSKIENYRLVDATLYVTLEPC-- 89

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
               P CA  I+   I+RV+    D     SG
Sbjct: 90  ----PMCAGAIVHSRIKRVIFGASDMKTGASG 117


>gi|166710619|ref|ZP_02241826.1| riboflavin-specific deaminase; 5-amino-6-uracil reductase
          [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 80

 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 30/53 (56%)

Query: 4  SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAE 56
          S+ D R+M+ ALR +      T  NP V C+IV+DG+ +G G     G PH E
Sbjct: 9  SADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHTE 61


>gi|289669069|ref|ZP_06490144.1| hypothetical protein XcampmN_11383 [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 174

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 15/121 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57
           P S+ D  +M  AL  +          P  A ++  +G V+G G    + ++    HAE+
Sbjct: 15  PHSAIDLHWMQHALHLAERAERDYDEIPVGALVVDAEGNVLGEGWNFNIASHDPSAHAEI 74

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+ EAG         G T YVTLEPC+       CA  +I   I RVV    DP     
Sbjct: 75  VAMREAGRRLANHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGAC 128

Query: 113 G 113
           G
Sbjct: 129 G 129


>gi|86740847|ref|YP_481247.1| CMP/dCMP deaminase, zinc-binding [Frankia sp. CcI3]
 gi|86567709|gb|ABD11518.1| CMP/dCMP deaminase, zinc-binding [Frankia sp. CcI3]
          Length = 150

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 6/96 (6%)

Query: 54  HAEVQALEEAGE-EARGATA--YVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDV 109
           HAE  AL + G  + R ATA  Y TLEPCS     P  C Q I+E  I RVV+   +P +
Sbjct: 54  HAEESALAKIGPGDPRLATATIYSTLEPCSQRKSRPRTCTQLILEAKIPRVVIAWREPSL 113

Query: 110 RVSG-RGLQWLSQKGIIVDRMME-SEGKIFLHAYLT 143
            V+  +G + L+Q G+ V  + E  E    ++A+L+
Sbjct: 114 FVADCQGYELLTQAGVTVVELPELGEQARAMNAHLS 149


>gi|196229635|ref|ZP_03128499.1| bifunctional deaminase-reductase domain protein [Chthoniobacter
           flavus Ellin428]
 gi|196225961|gb|EDY20467.1| bifunctional deaminase-reductase domain protein [Chthoniobacter
           flavus Ellin428]
          Length = 234

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 14/185 (7%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD----- 203
           R  +T   A++ D  I          T    K ++  +RA+ DAIL G  T+  D     
Sbjct: 7   RPFVTSNFAMTWDGRISTRRSTPANFTSPKDKRRLVEIRAECDAILAGAKTIATDNMTMG 66

Query: 204 --DPEL-TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL---A 257
             DP L T R+   Q   P+R++L    ++    ++ ++   +P+II +    P     A
Sbjct: 67  LPDPALRTARVKRGQSAYPLRVLLTNSGRIDPALRVFESTF-SPIIIFSTTRMPARVQSA 125

Query: 258 LAFRKKNINIIYCDCRDLKKLL-TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
           LA  K ++ +      +L  +L T+    GV  L+ EGGA +  + +++ L+D I L  +
Sbjct: 126 LAG-KADLWLHEGPAVNLAGMLATLRADYGVKRLVCEGGAQIFRALLSAGLIDEIHLTLA 184

Query: 317 QIVIG 321
             + G
Sbjct: 185 PKIFG 189


>gi|254672230|emb|CBA05187.1| putative hydrolase protein [Neisseria meningitidis alpha275]
          Length = 197

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 28/138 (20%)

Query: 2   PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52
           PV++F  +     FM  ALR +            V  +IV DG +I    +A+  C    
Sbjct: 40  PVAAFPPQEEMEHFMREALRQAEQSAA--DGEIPVGAVIVSDGKIIA---SAHNTCIADC 94

Query: 53  ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
               HAE+ AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+   
Sbjct: 95  NVSRHAEINALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 148

Query: 105 DDPDVRVSGRGLQWLSQK 122
            +P    +G  +   + K
Sbjct: 149 AEPKTGAAGSIVNLFADK 166


>gi|28198227|ref|NP_778541.1| cytosine deaminase [Xylella fastidiosa Temecula1]
 gi|170729545|ref|YP_001774978.1| cytosine deaminase [Xylella fastidiosa M12]
 gi|182680863|ref|YP_001829023.1| CMP/dCMP deaminase zinc-binding [Xylella fastidiosa M23]
 gi|28056297|gb|AAO28190.1| cytosine deaminase [Xylella fastidiosa Temecula1]
 gi|167964338|gb|ACA11348.1| cytosine deaminase [Xylella fastidiosa M12]
 gi|182630973|gb|ACB91749.1| CMP/dCMP deaminase zinc-binding [Xylella fastidiosa M23]
          Length = 165

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 52/128 (40%), Gaps = 15/128 (11%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57
           PV      +M  AL  +          P  A LI  +G ++G G    +T++    HAE+
Sbjct: 6   PVLPEHTHWMRHALTLAHRAATEFDEIPVGAVLISPEGTLLGEGCNYNITSHDPSAHAEI 65

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL  AG + R     G T YVTLEPC        CA  II   I  ++    DP     
Sbjct: 66  MALRAAGHQLRNHRMPGCTLYVTLEPCLM------CAMAIIHARIAHLIYAAADPKTGAC 119

Query: 113 GRGLQWLS 120
           G     L+
Sbjct: 120 GSTFDILN 127


>gi|78047755|ref|YP_363930.1| putative cytidine / deoxycytidylate deaminase family protein
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78036185|emb|CAJ23876.1| putative cytidine / deoxycytidylate deaminase family protein
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 169

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 15/121 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57
           P ++ D  +M  AL+ +          P  A L+   G V+G G    + ++    HAE+
Sbjct: 10  PHAAIDEHWMRHALQLAERAERDYDEIPVGALLVDAQGNVLGEGWNFNIASHDPSAHAEI 69

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+ EAG         G T YVTLEPC+       CA  +I   I RVV    DP     
Sbjct: 70  VAMREAGRRLANHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGAC 123

Query: 113 G 113
           G
Sbjct: 124 G 124


>gi|257094052|ref|YP_003167693.1| CMP/dCMP deaminase zinc-binding [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046576|gb|ACV35764.1| CMP/dCMP deaminase zinc-binding [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 153

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 17/116 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  FM  AL  ++    L      V  L+V+DG+++GRG  +  G      HAE+ AL +
Sbjct: 3   DEYFMREALSLAQAAECLGEV--PVGALVVRDGVIVGRGFNSPIGEHDPTAHAEIAALRD 60

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A    R     G   +VTLEPC+       CA  +++  + R+V    DP   V G
Sbjct: 61  AARTLRNYRLPGCELFVTLEPCAM------CAGAMLQARLARLVYGARDPKTGVHG 110


>gi|297539076|ref|YP_003674845.1| CMP/dCMP deaminase zinc-binding protein [Methylotenera sp. 301]
 gi|297258423|gb|ADI30268.1| CMP/dCMP deaminase zinc-binding protein [Methylotenera sp. 301]
          Length = 162

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 15/100 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           V  +IVKDG+VIGRG    +  +    HAE+ AL +A +        G + YVTLEPC+ 
Sbjct: 36  VGAIIVKDGVVIGRGGNSPIDTHDPTAHAEIAALRDAAKNLGNYRLVGCSLYVTLEPCAM 95

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                 C   I    I R+V   +DP     G  +  +++
Sbjct: 96  ------CTGAIQHARIARLVYGANDPKTGACGSVVNLMAE 129


>gi|254786582|ref|YP_003074011.1| cytidine and deoxycytidylate deaminase family protein
           [Teredinibacter turnerae T7901]
 gi|237687430|gb|ACR14694.1| cytidine and deoxycytidylate deaminase family protein
           [Teredinibacter turnerae T7901]
          Length = 164

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 57/125 (45%), Gaps = 17/125 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP---HAEVQALEE 62
           D  +M+ AL  +R           V  ++V+DG +IGRG     G C    HAE+ AL +
Sbjct: 5   DEHWMTEALVLAR--EAAAQGEVPVGAVLVQDGAIIGRGSNNPIGSCDASGHAEICALRD 62

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AG+  +      AT YVT+EPC+       C   I+   I RVV    +P   V     +
Sbjct: 63  AGQRQKNYRLPNATLYVTIEPCTM------CLGAIVHARIARVVFGAPEPKAGVLESNPE 116

Query: 118 WLSQK 122
            LS K
Sbjct: 117 LLSAK 121


>gi|332800033|ref|YP_004461532.1| CMP/dCMP deaminase zinc-binding protein [Tepidanaerobacter sp. Re1]
 gi|332697768|gb|AEE92225.1| CMP/dCMP deaminase zinc-binding protein [Tepidanaerobacter sp. Re1]
          Length = 138

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 55/129 (42%), Gaps = 39/129 (30%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNP--SVACLIVKDGIVIGRGVTAYGGCP-------- 53
             +D  F+  A +     V   ST P   V  ++VKD  + G   T Y G P        
Sbjct: 3   KDWDKYFLEIAFK-----VRERSTCPRLQVGAVVVKDNRIKG---TGYNGSPSGMDHCDD 54

Query: 54  --------------HAEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                         HAEV AL E   EE +GAT YVT  PC+       C++ II  GI+
Sbjct: 55  VGCMIRGNHCVRTIHAEVNALLECSPEERKGATIYVTARPCAE------CSKLIINSGIK 108

Query: 99  RVVVCVDDP 107
           RVV  ++ P
Sbjct: 109 RVVYAIEYP 117


>gi|309380104|emb|CBX21515.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 239

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 28/138 (20%)

Query: 2   PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52
           PV++F  +     FM  AL  ++    L    P V  +IV DG +I    +A+  C    
Sbjct: 82  PVAAFPPQGEMEHFMGLALEQAKLS-ALMGEIP-VGAVIVSDGKIIA---SAHNTCIADC 136

Query: 53  ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
               HAE+ AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+   
Sbjct: 137 NVSRHAEINALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 190

Query: 105 DDPDVRVSGRGLQWLSQK 122
            +P    +G  +   + K
Sbjct: 191 AEPKTGAAGSIVNLFADK 208


>gi|302345385|ref|YP_003813738.1| dCMP deaminase family protein [Prevotella melaninogenica ATCC
           25845]
 gi|302149570|gb|ADK95832.1| dCMP deaminase family protein [Prevotella melaninogenica ATCC
           25845]
          Length = 166

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 63/147 (42%), Gaps = 40/147 (27%)

Query: 4   SSFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------- 53
           ++ D R+    LR +R W          V  L+VKD ++I  G   Y G P         
Sbjct: 22  AAVDYRY----LRMARIWAENSYCKRRQVGALVVKDKMIISDG---YNGTPSGFENICED 74

Query: 54  ----------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                     HAE  A   L  +G  + G+T YVT  PC        CA+ II+ GIRRV
Sbjct: 75  ESGVTKPYVLHAEANAITKLARSGNNSEGSTLYVTASPCIE------CAKLIIQAGIRRV 128

Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           V        R++  G+  L++ G+ V+
Sbjct: 129 VYA---EKYRLTD-GIDLLTRAGVEVE 151


>gi|300113226|ref|YP_003759801.1| CMP/dCMP deaminase zinc-binding protein [Nitrosococcus watsonii
           C-113]
 gi|299539163|gb|ADJ27480.1| CMP/dCMP deaminase zinc-binding protein [Nitrosococcus watsonii
           C-113]
          Length = 188

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 66/152 (43%), Gaps = 27/152 (17%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
           P    D  +M  AL  +R+     +    V  ++V++  ++G G      CP        
Sbjct: 38  PPGEKDIPWMYHALALARY--AEETGEVPVGAVVVQEDEIVGEGWN----CPINSRDPTA 91

Query: 54  HAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+QA+  A ++       G T YVTLEPC+       CA  II+  IRRVV    DP 
Sbjct: 92  HAEIQAIRAASQQLGNYRLVGTTLYVTLEPCAM------CAGAIIQARIRRVVFGAFDPK 145

Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
               G  L  L   G  ++  +E +G +   A
Sbjct: 146 GGAVGSALSIL--PGERLNHQVECQGGVLAEA 175


>gi|28897437|ref|NP_797042.1| YfhC protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|28805649|dbj|BAC58926.1| YfhC protein [Vibrio parahaemolyticus RIMD 2210633]
          Length = 161

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 60/139 (43%), Gaps = 23/139 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++VKDG VI  G    + ++    HAE+Q L  AG   E  R    T YVTLEPC  
Sbjct: 19  VGAVLVKDGEVIAEGWNRSICSHDATAHAEIQTLRNAGAVLENYRLLDTTLYVTLEPC-- 76

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136
               P CA  ++   ++RVV    D     +G  L     +       +   ++E E + 
Sbjct: 77  ----PMCAGALLHSRVKRVVFGAPDLKAGAAGTVLNLFESQAAYHYATVEKGLLEDECRE 132

Query: 137 FLHAYLTRQVEKRSHITLK 155
            L A+  R   +R  I  K
Sbjct: 133 QLQAFFKR---RRKEIKAK 148


>gi|59711257|ref|YP_204033.1| tRNA-specific adenosine deaminase [Vibrio fischeri ES114]
 gi|59479358|gb|AAW85145.1| tRNA-specific adenosine deaminase [Vibrio fischeri ES114]
          Length = 171

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  +IV D  +IG G    ++ +    HAE+ A+++AG +        AT YVTLEPC  
Sbjct: 32  VGAVIVLDDEIIGEGWNRSISTHDATAHAEMMAIKQAGSKIENYRLVDATLYVTLEPC-- 89

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
               P CA  I+   I+RV+    D     SG
Sbjct: 90  ----PMCAGAIVHSRIKRVIFGASDMKTGASG 117


>gi|330955311|gb|EGH55571.1| cytosine deaminase [Pseudomonas syringae Cit 7]
          Length = 145

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 20/146 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65
           FM AA  F    +GL      +  +IV  G +IGRG    V       H E+ ALE AG 
Sbjct: 4   FMQAA--FDEAQLGLKEGGIPIGSVIVHGGKIIGRGHNRRVQEGSATKHGEMDALENAGR 61

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +     R +  Y TL PC+       C+  I+  GIR+V++  ++  +         L  
Sbjct: 62  QPASVYRNSVLYTTLSPCAM------CSGAILLYGIRKVIIGENESFMGEE----DLLRS 111

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVE 147
           +G+ +D +   + K  +  ++  + E
Sbjct: 112 RGVQIDVLDNHDCKHMMQGFIASKPE 137


>gi|303237263|ref|ZP_07323833.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella disiens FB035-09AN]
 gi|302482650|gb|EFL45675.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella disiens FB035-09AN]
          Length = 148

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 49/119 (41%), Gaps = 36/119 (30%)

Query: 6   FDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            D R+    LR +R W          V  L+VKD ++I  G   Y G P           
Sbjct: 9   LDYRY----LRMARVWSENSYCKRRQVGALVVKDKMIISDG---YNGTPSGFENICEDND 61

Query: 54  --------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                   HAE  A   L  +G  + G+T YVT  PC        CA+ II+ GI+RVV
Sbjct: 62  GLTKPYVLHAEANAITKLARSGNNSEGSTLYVTASPCIE------CAKLIIQSGIKRVV 114


>gi|198275609|ref|ZP_03208140.1| hypothetical protein BACPLE_01778 [Bacteroides plebeius DSM 17135]
 gi|198271238|gb|EDY95508.1| hypothetical protein BACPLE_01778 [Bacteroides plebeius DSM 17135]
          Length = 144

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 48/118 (40%), Gaps = 34/118 (28%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
            D R+M  AL    W          V  LIVKD ++I  G   Y G P            
Sbjct: 11  LDKRYMRMALI---WAENSYCQRRQVGALIVKDKMIISDG---YNGTPAGFENVCEDENG 64

Query: 54  -------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                  HAE  A+ +   +   + GAT YVT  PC        CA+ II+ GI+RVV
Sbjct: 65  VTRPYVLHAEANAITKIARSSNSSEGATMYVTASPCIE------CAKLIIQAGIKRVV 116


>gi|72161281|ref|YP_288938.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermobifida
           fusca YX]
 gi|71915013|gb|AAZ54915.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermobifida
           fusca YX]
          Length = 153

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 58/123 (47%), Gaps = 7/123 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGC-PHAEVQALEE-A 63
           D R +  A+  SR     +ST  SV  LIV  DG V+  G +       HAE  AL   A
Sbjct: 8   DLRLLRTAVDLSR-SCPPSSTAFSVGALIVAADGTVLADGYSRRDDPHDHAEEVALRAVA 66

Query: 64  GEEAR--GATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            E+ R   AT Y +LEPCS     P  C   I++  I R+V    +P++ V  RG + L 
Sbjct: 67  AEDPRLAAATLYSSLEPCSTRASRPRSCTSLILDTPIPRIVFAWREPELFVDCRGAELLR 126

Query: 121 QKG 123
             G
Sbjct: 127 AAG 129


>gi|261392718|emb|CAX50291.1| tRNA-specific adenosine deaminase [Neisseria meningitidis 8013]
          Length = 239

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 28/138 (20%)

Query: 2   PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52
           PV++F  +     FM  ALR +            V  +IV DG +I    +A+  C    
Sbjct: 82  PVAAFPPQEEMEHFMCEALRQAEQSSA--DGEIPVGAVIVSDGKIIA---SAHNTCIADC 136

Query: 53  ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
               HAE+ AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+   
Sbjct: 137 NVSRHAEINALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 190

Query: 105 DDPDVRVSGRGLQWLSQK 122
            +P    +G  +   + K
Sbjct: 191 AEPKTGAAGSIVNLFADK 208


>gi|53712256|ref|YP_098248.1| deoxycytidylate deaminase [Bacteroides fragilis YCH46]
 gi|60680433|ref|YP_210577.1| putative deoxycytidylate deaminase [Bacteroides fragilis NCTC 9343]
 gi|253563708|ref|ZP_04841165.1| deoxycytidylate deaminase [Bacteroides sp. 3_2_5]
 gi|265762444|ref|ZP_06091012.1| ComE operon protein 2 [Bacteroides sp. 2_1_16]
 gi|52215121|dbj|BAD47714.1| deoxycytidylate deaminase [Bacteroides fragilis YCH46]
 gi|60491867|emb|CAH06625.1| putative deoxycytidylate deaminase [Bacteroides fragilis NCTC 9343]
 gi|251947484|gb|EES87766.1| deoxycytidylate deaminase [Bacteroides sp. 3_2_5]
 gi|263255052|gb|EEZ26398.1| ComE operon protein 2 [Bacteroides sp. 2_1_16]
 gi|301161966|emb|CBW21510.1| putative deoxycytidylate deaminase [Bacteroides fragilis 638R]
          Length = 145

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 49/120 (40%), Gaps = 34/120 (28%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53
           S  D R++  A   S W          V  LIVKD ++I  G   Y G P          
Sbjct: 9   SDLDKRYIRMA---SIWSENSYCQRRKVGALIVKDKMIISDG---YNGTPSGFENVCEDD 62

Query: 54  ---------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                    HAE  A+ +   +   + GAT YVT  PC        CA+ II+ GI+RVV
Sbjct: 63  NNVTKPYVLHAEANAITKIARSNNSSDGATMYVTASPC------IECAKLIIQAGIKRVV 116


>gi|91776192|ref|YP_545948.1| tRNA-adenosine deaminase [Methylobacillus flagellatus KT]
 gi|91710179|gb|ABE50107.1| tRNA-adenosine deaminase [Methylobacillus flagellatus KT]
          Length = 168

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 75/174 (43%), Gaps = 36/174 (20%)

Query: 1   MPVS-----SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGG 51
           MP S     + D  FM  AL+ ++    L    P V  ++VKDG+VIGRG  A    +  
Sbjct: 1   MPASQEENTAADEDFMRIALQLAQ-EAALAGEVP-VGAVVVKDGVVIGRGSNAPIAYHDP 58

Query: 52  CPHAEVQALEEAGEEAR-------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
             HAE++A+ +A   AR       G   YVTLEPC+       CA  I    I R+V   
Sbjct: 59  SAHAEIRAMRDAA--ARLGNYRLTGCALYVTLEPCAM------CAGAIQHARIARLVFGA 110

Query: 105 DDPDVRVSGRGLQWLSQK----------GIIVDRMMESEGKIFLHAYLTRQVEK 148
            D      G  +  ++++          G++V     +  + F      ++VEK
Sbjct: 111 HDYKTGACGSVIDLMAEERLNHHTLVKSGVLVQECSATLTQFFAERRRQQKVEK 164


>gi|15640880|ref|NP_230511.1| yfhC protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121585742|ref|ZP_01675537.1| zinc-binding domain protein [Vibrio cholerae 2740-80]
 gi|121728321|ref|ZP_01681351.1| zinc-binding domain protein [Vibrio cholerae V52]
 gi|147675155|ref|YP_001216345.1| zinc-binding domain-containing protein [Vibrio cholerae O395]
 gi|153802057|ref|ZP_01956643.1| zinc-binding domain protein [Vibrio cholerae MZO-3]
 gi|153819008|ref|ZP_01971675.1| zinc-binding domain protein [Vibrio cholerae NCTC 8457]
 gi|153823068|ref|ZP_01975735.1| zinc-binding domain protein [Vibrio cholerae B33]
 gi|227081040|ref|YP_002809591.1| yfhC protein [Vibrio cholerae M66-2]
 gi|229505525|ref|ZP_04395035.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae BX 330286]
 gi|229510804|ref|ZP_04400283.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae B33]
 gi|229517925|ref|ZP_04407369.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae RC9]
 gi|229608545|ref|YP_002879193.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae MJ-1236]
 gi|254848002|ref|ZP_05237352.1| zinc-binding domain-containing protein [Vibrio cholerae MO10]
 gi|298499008|ref|ZP_07008815.1| zinc-binding domain-containing protein [Vibrio cholerae MAK 757]
 gi|9655317|gb|AAF94026.1| yfhC protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121550105|gb|EAX60121.1| zinc-binding domain protein [Vibrio cholerae 2740-80]
 gi|121629376|gb|EAX61806.1| zinc-binding domain protein [Vibrio cholerae V52]
 gi|124122416|gb|EAY41159.1| zinc-binding domain protein [Vibrio cholerae MZO-3]
 gi|126510441|gb|EAZ73035.1| zinc-binding domain protein [Vibrio cholerae NCTC 8457]
 gi|126519394|gb|EAZ76617.1| zinc-binding domain protein [Vibrio cholerae B33]
 gi|146317038|gb|ABQ21577.1| zinc-binding domain protein [Vibrio cholerae O395]
 gi|227008928|gb|ACP05140.1| yfhC protein [Vibrio cholerae M66-2]
 gi|227012684|gb|ACP08894.1| yfhC protein [Vibrio cholerae O395]
 gi|229344640|gb|EEO09614.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae RC9]
 gi|229350769|gb|EEO15710.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae B33]
 gi|229357748|gb|EEO22665.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae BX 330286]
 gi|229371200|gb|ACQ61623.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae MJ-1236]
 gi|254843707|gb|EET22121.1| zinc-binding domain-containing protein [Vibrio cholerae MO10]
 gi|297543341|gb|EFH79391.1| zinc-binding domain-containing protein [Vibrio cholerae MAK 757]
          Length = 193

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 23/146 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V+DG +I  G    +T +    HAE++ + +AG+          T YVTLEPC  
Sbjct: 50  VGAVLVRDGEIIAEGWNGSITNHDATAHAEIEVIRKAGKALSNYRLLDTTLYVTLEPC-- 107

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136
               P CA  ++   ++R+V    D     +G  +   S +       +   ++E E + 
Sbjct: 108 ----PMCAGALLHSRVKRIVYGAPDLKAGAAGTVMDLFSSQAAYHYATVEKGLLEEECRA 163

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDN 162
            L A+  R   +R  I  K    + N
Sbjct: 164 QLQAFFQR---RRKEIKAKRDAERKN 186


>gi|289577296|ref|YP_003475923.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter
           italicus Ab9]
 gi|289527009|gb|ADD01361.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter
           italicus Ab9]
          Length = 148

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAG 64
           +FM AA+  +     L      V  +IVKD  +IGRG            HAE+ A++EA 
Sbjct: 4   KFMKAAILEANKSYQLREV--PVGAVIVKDDQIIGRGFNQKEATNDVTAHAEIMAIKEAC 61

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           +          + YVTLEPC      P CA  I+E  I+RV +  +      +G  +  L
Sbjct: 62  KTLGSWRLDDCSIYVTLEPC------PMCAGAILEARIKRVYIGTESDKSGAAGTVINLL 115

Query: 120 SQ-----KGIIVDRMMESEGKIFLHAYL 142
           +      K  +   +ME E K+ L  + 
Sbjct: 116 NNPDLGSKTEVYFGIMEDECKMLLENFF 143


>gi|153824574|ref|ZP_01977241.1| zinc-binding domain protein [Vibrio cholerae MZO-2]
 gi|149741792|gb|EDM55821.1| zinc-binding domain protein [Vibrio cholerae MZO-2]
          Length = 193

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 23/139 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V+DG +I  G    +T +    HAE++ + +AG+          T YVTLEPC  
Sbjct: 50  VGAVLVRDGEIIAEGWNGSITNHDATAHAEIEVIRKAGKALSNYRLLDTTLYVTLEPC-- 107

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136
               P CA  ++   ++R+V    D     +G  L   S +       +   ++E E + 
Sbjct: 108 ----PMCAGALLHSRVKRIVYGAPDLKAGAAGTVLDLFSSQAAYHYATVEKGLLEEECRA 163

Query: 137 FLHAYLTRQVEKRSHITLK 155
            L A+  R   +R  I  K
Sbjct: 164 QLQAFFQR---RRKEIKAK 179


>gi|238917935|ref|YP_002931452.1| hypothetical protein EUBELI_02023 [Eubacterium eligens ATCC 27750]
 gi|238873295|gb|ACR73005.1| Hypothetical protein EUBELI_02023 [Eubacterium eligens ATCC 27750]
          Length = 176

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 55/123 (44%), Gaps = 17/123 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D R+M  A+  ++    L      + C+IV +G VIGRG     T      HAE+ A+++
Sbjct: 17  DYRYMKQAITQAKKAYKLNEV--PIGCVIVYEGKVIGRGYNRRNTDKTSLGHAEITAIKK 74

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A            T YVTLEPC        CA  I++  I RVV+   +P    +G  L 
Sbjct: 75  ASRYMNDWRLENCTLYVTLEPCQM------CAGAIVQARIPRVVIGSMNPKAGCAGSILN 128

Query: 118 WLS 120
            L 
Sbjct: 129 ILQ 131


>gi|45659030|ref|YP_003116.1| riboflavin-specific deaminase/reductase [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45602276|gb|AAS71753.1| riboflavin-specific deaminase/reductase [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 222

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 91/184 (49%), Gaps = 14/184 (7%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
           ++++ +A++ D  +         ++    K ++  +R++++ +++G  ++L DDP +  R
Sbjct: 6   NVSVNMAMTLDGKVSRPDGRWYGLSSRNDKKRMDEIRSKAEVLILGKNSILNDDPVVHLR 65

Query: 211 -LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN--- 266
            ++ +Q+  P  +IL     +  D K+ + + + P+I   + +  ++     ++N++   
Sbjct: 66  YVDNVQDPRP--VILVRSGTIPKDKKVFRFSKIPPLIFCLDENHHLI-----QENLSSCA 118

Query: 267 -IIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            I+     DL   K L +L   G   +L+EGG ++  SF    LV  I L     +IG+ 
Sbjct: 119 QIVPISGNDLSPLKALKVLSEMGYREILLEGGPSLNDSFFRLNLVSRIYLTIVPFIIGKK 178

Query: 324 GIPS 327
            +PS
Sbjct: 179 DLPS 182


>gi|229530028|ref|ZP_04419418.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae 12129(1)]
 gi|229333802|gb|EEN99288.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae 12129(1)]
          Length = 193

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 23/139 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V+DG +I  G    +T +    HAE++ + +AG+          T YVTLEPC  
Sbjct: 50  VGAVLVRDGEIIAEGWNGSITNHDATAHAEIEVIRKAGKALSNYRLLDTTLYVTLEPC-- 107

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136
               P CA  ++   ++R+V    D     +G  L   S +       +   ++E E + 
Sbjct: 108 ----PMCAGALLHSRVKRIVYGAPDLKAGAAGTVLDLFSSQAAYHYATVEKGLLEEECRA 163

Query: 137 FLHAYLTRQVEKRSHITLK 155
            L A+  R   +R  I  K
Sbjct: 164 QLQAFFQR---RRKEIKAK 179


>gi|24216718|ref|NP_714199.1| riboflavin-specific deaminase/reductase [Leptospira interrogans
           serovar Lai str. 56601]
 gi|24198069|gb|AAN51217.1| riboflavin-specific deaminase/reductase [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 222

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 91/184 (49%), Gaps = 14/184 (7%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
           ++++ +A++ D  +         ++    K ++  +R++++ +++G  ++L DDP +  R
Sbjct: 6   NVSVNMAMTLDGKVSRPDGRWYGLSSRNDKKRMDEIRSKAEVLILGKNSILNDDPVVHLR 65

Query: 211 -LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN--- 266
            ++ +Q+  P  +IL     +  D K+ + + + P+I   + +  ++     ++N++   
Sbjct: 66  YVDNVQDPRP--VILVRSGTIPKDKKVFRFSKIPPLIFCLDENHHLI-----QENLSSCA 118

Query: 267 -IIYCDCRDLKKL--LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            I+     DL  L  L +L   G   +L+EGG ++  SF    LV  I L     +IG+ 
Sbjct: 119 QIVPISGNDLSPLKALKVLSEMGYREILLEGGPSLNDSFFRLNLVSRIYLTIVPFIIGKK 178

Query: 324 GIPS 327
            +PS
Sbjct: 179 DLPS 182


>gi|325207969|gb|ADZ03421.1| putative tRNA-specific adenosine deaminase [Neisseria meningitidis
           NZ-05/33]
          Length = 148

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 23/127 (18%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC-------PHAEVQAL 60
           A FM  AL  ++    L    P V  +IV DG +I    +A+  C        HAE+ AL
Sbjct: 2   AHFMGLALEQAKLSA-LMGEIP-VGAVIVSDGKII---ASAHNTCIADCNVSRHAEINAL 56

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+    +P    +G  
Sbjct: 57  AQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGAAEPKTGAAGSI 110

Query: 116 LQWLSQK 122
           +   + K
Sbjct: 111 VNLFADK 117


>gi|15837614|ref|NP_298302.1| hypothetical protein XF1012 [Xylella fastidiosa 9a5c]
 gi|9105950|gb|AAF83822.1|AE003939_1 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 167

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 15/94 (15%)

Query: 29  PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPC 79
           P  A LI  +G ++G G    +T++    HAE+ AL  AG + R     G T YVTLEPC
Sbjct: 35  PVGAVLISPEGTLLGEGWNYNITSHDPSAHAEIMALRAAGHQLRNHRMPGCTLYVTLEPC 94

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                   CA  II   I  ++    DP     G
Sbjct: 95  L------MCAMAIIHARIAHLIYAAADPKTGACG 122


>gi|255744661|ref|ZP_05418612.1| tRNA-specific adenosine-34 deaminase [Vibrio cholera CIRS 101]
 gi|262161205|ref|ZP_06030316.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae INDRE 91/1]
 gi|262168710|ref|ZP_06036405.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae RC27]
 gi|255737692|gb|EET93086.1| tRNA-specific adenosine-34 deaminase [Vibrio cholera CIRS 101]
 gi|262022828|gb|EEY41534.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae RC27]
 gi|262028955|gb|EEY47608.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae INDRE 91/1]
          Length = 175

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 23/146 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V+DG +I  G    +T +    HAE++ + +AG+          T YVTLEPC  
Sbjct: 32  VGAVLVRDGEIIAEGWNGSITNHDATAHAEIEVIRKAGKALSNYRLLDTTLYVTLEPC-- 89

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136
               P CA  ++   ++R+V    D     +G  +   S +       +   ++E E + 
Sbjct: 90  ----PMCAGALLHSRVKRIVYGAPDLKAGAAGTVMDLFSSQAAYHYATVEKGLLEEECRA 145

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDN 162
            L A+  R   +R  I  K    + N
Sbjct: 146 QLQAFFQR---RRKEIKAKRDAERKN 168


>gi|307579329|gb|ADN63298.1| CMP/dCMP deaminase zinc-binding protein [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 151

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 15/101 (14%)

Query: 29  PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPC 79
           P  A LI  +G ++G G    +T++    HAE+ AL  AG + R     G T YVTLEPC
Sbjct: 19  PVGAVLISPEGTLLGEGCNYNITSHDPSAHAEIMALRAAGHQLRNHRMPGCTLYVTLEPC 78

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                   CA  II   I  ++    DP     G     L+
Sbjct: 79  LM------CAMAIIHARIAHLIYAAADPKTGACGSTFDILN 113


>gi|167628994|ref|YP_001679493.1| come operon protein 2 [Heliobacterium modesticaldum Ice1]
 gi|167591734|gb|ABZ83482.1| come operon protein 2 [Heliobacterium modesticaldum Ice1]
          Length = 146

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 54/125 (43%), Gaps = 39/125 (31%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNP--SVACLIVKDGIVIGRGVTAYGGCP---------- 53
           +D+ F+  A       V   ST P  SV  +IVKD  + G   T Y G P          
Sbjct: 5   WDSYFIDIAFA-----VSSRSTCPRRSVGAVIVKDKRIKG---TGYNGSPAGLPHCTDAG 56

Query: 54  ------------HAEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                       HAEV A+ E   EE +GAT YVT  PC+       CA+ II  GIRRV
Sbjct: 57  CCMWNNHCVRTIHAEVNAIMECSPEERKGATIYVTDRPCAE------CAKVIISSGIRRV 110

Query: 101 VVCVD 105
           V   D
Sbjct: 111 VFARD 115


>gi|325204006|gb|ADY99459.1| tRNA-specific adenosine deaminase [Neisseria meningitidis
           M01-240355]
          Length = 239

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 28/138 (20%)

Query: 2   PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52
           PV++F  +     FM  ALR +            V  +IV DG +I    +A+  C    
Sbjct: 82  PVAAFPPQEEMEHFMCEALRQAEQSSA--DGEIPVGAVIVSDGKIIA---SAHNTCIADC 136

Query: 53  ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
               HAE+ AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+   
Sbjct: 137 NVSRHAEINALAQAGREIQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 190

Query: 105 DDPDVRVSGRGLQWLSQK 122
            +P    +G  +   + K
Sbjct: 191 AEPKTGAAGSIVNLFADK 208


>gi|283796876|ref|ZP_06346029.1| tRNA-specific adenosine deaminase [Clostridium sp. M62/1]
 gi|291075284|gb|EFE12648.1| tRNA-specific adenosine deaminase [Clostridium sp. M62/1]
          Length = 215

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 21/129 (16%)

Query: 7   DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
           D R+M  A+R ++  W +G       + C+IV  G +IGRG     T      HAE+ A+
Sbjct: 43  DERYMREAVRQAKKAWALGEVP----IGCVIVHRGKIIGRGYNRRTTDGNVLAHAEILAI 98

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A            T YVTLEPC      P CA  I++  I +VV+   +P    +G  
Sbjct: 99  RKACRIIGDWRLEECTMYVTLEPC------PMCAGAIVQARIPKVVIGCMNPKAGCAGSV 152

Query: 116 LQWLSQKGI 124
           L  L ++G 
Sbjct: 153 LDLLHEEGF 161


>gi|229523332|ref|ZP_04412739.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae TM 11079-80]
 gi|229339695|gb|EEO04710.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae TM 11079-80]
          Length = 177

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 23/139 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V+DG +I  G    +T +    HAE++ + +AG+          T YVTLEPC  
Sbjct: 34  VGAVLVRDGEIIAEGWNGSITNHDATAHAEIEVIRKAGKALSNYRLLDTTLYVTLEPC-- 91

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136
               P CA  ++   ++R+V    D     +G  L   S +       +   ++E E + 
Sbjct: 92  ----PMCAGALLHSRVKRIVYGAPDLKAGAAGTVLDLFSSQAAYHYATVEKGLLEEECRA 147

Query: 137 FLHAYLTRQVEKRSHITLK 155
            L A+  R   +R  I  K
Sbjct: 148 QLQAFFQR---RRKEIKAK 163


>gi|294672973|ref|YP_003573589.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing
           protein [Prevotella ruminicola 23]
 gi|294474140|gb|ADE83529.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Prevotella ruminicola 23]
          Length = 145

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 49/121 (40%), Gaps = 36/121 (29%)

Query: 4   SSFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------- 53
           S  D R+    LR +R W          V  L+VKD ++I  G   Y G P         
Sbjct: 9   SKLDVRY----LRMARIWAENSYCKRRQVGALVVKDKMIISDG---YNGTPSGFENVCED 61

Query: 54  ----------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                     HAE  A   L  +   + GAT Y+T  PC        CA+ II+ GI+RV
Sbjct: 62  DDNVTKPYVLHAEANAITKLARSNNNSDGATIYITASPCIE------CAKLIIQAGIKRV 115

Query: 101 V 101
           V
Sbjct: 116 V 116


>gi|158317044|ref|YP_001509552.1| deaminase-reductase domain-containing protein [Frankia sp. EAN1pec]
 gi|158112449|gb|ABW14646.1| bifunctional deaminase-reductase domain protein [Frankia sp.
           EAN1pec]
          Length = 252

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 85/212 (40%), Gaps = 33/212 (15%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R ++ L  A+S D  I       + ++     ++V  +RA  DAILVG  T+  D+P L 
Sbjct: 4   RPYVLLSCAMSLDGRIDDCSPQRLVLSSQADLDRVDEVRAGCDAILVGARTLRRDNPGLA 63

Query: 209 CRLNGLQEH--------SPMRIIL------DPHFKLSLDSK---IIKTALLAP------- 244
            R    +          +P+R +L      DP  +  LD     + + A  AP       
Sbjct: 64  VRSERRRAERTAAGRPATPLRAVLTSGGRLDPDARFFLDGAEKVVYRFAGAAPRPAPESG 123

Query: 245 --------VIIVTENDDPVLALAFRKKNI-NIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
                       T    P  A+      +  ++  +   L+ LL  L  RG   LLVEGG
Sbjct: 124 PGAGAGAGAGAGTGTGSPAPAVPPDLSAVATVVDLEAPPLEHLLDDLSRRGTRRLLVEGG 183

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
             V  +F+ + LVD + L  +   +GE   P+
Sbjct: 184 TTVHTAFLTAGLVDELHLVIAPFFVGEAAAPT 215


>gi|71902073|ref|ZP_00684112.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Xylella
           fastidiosa Ann-1]
 gi|71728165|gb|EAO30357.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Xylella
           fastidiosa Ann-1]
          Length = 203

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 50/121 (41%), Gaps = 15/121 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57
           PV      +M  AL  +          P  A LI  +G ++G G    +T++    HAE+
Sbjct: 44  PVLPEHTHWMRHALTLAHRAATEFDEIPVGAVLISPEGTLLGEGCNYNITSHDPSAHAEI 103

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL  AG + R     G T YVTLEPC        CA  II   I  ++    DP     
Sbjct: 104 MALRAAGHQLRNHRMPGCTLYVTLEPCLM------CAMAIIHARIAHLIYAATDPKTGAC 157

Query: 113 G 113
           G
Sbjct: 158 G 158


>gi|296875658|ref|ZP_06899727.1| possible cytosine deaminase [Streptococcus parasanguinis ATCC
          15912]
 gi|322390383|ref|ZP_08063906.1| tRNA-specific adenosine deaminase [Streptococcus parasanguinis
          ATCC 903]
 gi|296433342|gb|EFH19120.1| possible cytosine deaminase [Streptococcus parasanguinis ATCC
          15912]
 gi|321142924|gb|EFX38379.1| tRNA-specific adenosine deaminase [Streptococcus parasanguinis
          ATCC 903]
          Length = 180

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 11/81 (13%)

Query: 8  ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
          A FM  AL+ +   + L +    + C++VKDG +IGRG  A         HAE+ A+EEA
Sbjct: 20 AMFMREALKEA--EIALANDEIPIGCVLVKDGQIIGRGHNAREELQRAVMHAEIMAIEEA 77

Query: 64 GEEARG-----ATAYVTLEPC 79
           +          T +VT+EPC
Sbjct: 78 NQRENSWRLLDTTLFVTIEPC 98


>gi|154491043|ref|ZP_02030984.1| hypothetical protein PARMER_00962 [Parabacteroides merdae ATCC
           43184]
 gi|154088791|gb|EDN87835.1| hypothetical protein PARMER_00962 [Parabacteroides merdae ATCC
           43184]
          Length = 144

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 59/144 (40%), Gaps = 38/144 (26%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
            D R++  A   + W          V  LIVKD ++I  G   Y G P            
Sbjct: 11  LDKRYLRMA---AVWAENSYCKRRQVGALIVKDQMIISDG---YNGTPSGFENVCEDEHN 64

Query: 54  -------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A+ +   +   ++GAT YVT  PC        CA+ II+ GI+RVV  
Sbjct: 65  VTKPYVLHAEANAITKVAASSNSSKGATIYVTSAPCIE------CAKLIIQSGIKRVVY- 117

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD 127
                 RV   G   L + G+I+D
Sbjct: 118 --SEKYRVED-GCNLLRRAGVIID 138


>gi|170723352|ref|YP_001751040.1| CMP/dCMP deaminase zinc-binding [Pseudomonas putida W619]
 gi|169761355|gb|ACA74671.1| CMP/dCMP deaminase zinc-binding [Pseudomonas putida W619]
          Length = 159

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 60/135 (44%), Gaps = 18/135 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
           S D  FM  AL  +     L      V  ++V+ G VIG+G    +       HAE+ A+
Sbjct: 9   SRDQEFMRMALDLAAQGAALGEV--PVGAVLVQHGQVIGQGFNRPIIDSDPSAHAEMVAI 66

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A + A      G+T YVTLEPCS       CA  I+   + RVV    +P   +    
Sbjct: 67  RAAAKSASNYRLPGSTLYVTLEPCSM------CAGLIVHSRVARVVYGALEPKAGIVQSQ 120

Query: 116 LQWLSQKGIIVDRMM 130
            Q+ SQ G +  R+M
Sbjct: 121 GQFFSQ-GFLNHRVM 134


>gi|152997998|ref|YP_001342833.1| zinc-binding CMP/dCMP deaminase [Marinomonas sp. MWYL1]
 gi|150838922|gb|ABR72898.1| CMP/dCMP deaminase zinc-binding [Marinomonas sp. MWYL1]
          Length = 162

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 33/139 (23%)

Query: 31  VACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           V  ++V DG +IG G  A         HAE+QA+  A +        GAT YVTLEPCS 
Sbjct: 25  VGAIVVLDGEIIGEGYNAPISLCDPTAHAEIQAIRMACKTINNYRLPGATLYVTLEPCSM 84

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
                 CA  ++   I RVV    +P             + GI+     ES+G  F   +
Sbjct: 85  ------CAGAMVHARIDRVVYAATEP-------------KSGIV-----ESQGHFFEAPF 120

Query: 142 LTRQVEKRSHITLKIAVSQ 160
           L  +V+  S +  ++A  Q
Sbjct: 121 LNHKVKVESGVLAEMASLQ 139


>gi|323492402|ref|ZP_08097552.1| tRNA-specific adenosine-34 deaminase [Vibrio brasiliensis LMG
           20546]
 gi|323313363|gb|EGA66477.1| tRNA-specific adenosine-34 deaminase [Vibrio brasiliensis LMG
           20546]
          Length = 181

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 22/127 (17%)

Query: 1   MPVSSF---DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCP 53
           M  S F   D  FM  A+  ++ H       P V  ++VKDG +I  G    + ++    
Sbjct: 1   MSESQFTPQDELFMRRAMELAQ-HAEEQGEVP-VGAVLVKDGEIIAEGWNESIGSHDATA 58

Query: 54  HAEVQALEEAG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+Q + +AG   E  R    T YVTLEPC      P CA  ++   ++R+V     PD
Sbjct: 59  HAEMQTIRKAGLALENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVFGA--PD 110

Query: 109 VRVSGRG 115
           ++    G
Sbjct: 111 LKAGAAG 117


>gi|281419672|ref|ZP_06250671.1| cytidine/deoxycytidylate deaminase family protein [Prevotella copri
           DSM 18205]
 gi|281406201|gb|EFB36881.1| cytidine/deoxycytidylate deaminase family protein [Prevotella copri
           DSM 18205]
          Length = 150

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 63/156 (40%), Gaps = 47/156 (30%)

Query: 4   SSFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------- 53
           +  D R+    LR +R W          V  L+VKD ++I  G   Y G P         
Sbjct: 9   TKLDLRY----LRMARIWAENSYCKRRQVGALVVKDKMIISDG---YNGTPSGFENVCED 61

Query: 54  ---------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                    HAE  A   L  +   + G+T YVT  PC        CA+ II+ GI+RVV
Sbjct: 62  NNVTKPYVLHAEANAITKLARSSNNSEGSTLYVTASPCIE------CAKLIIQSGIKRVV 115

Query: 102 VC----VDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
                 +DD        G++ + + GI V+ +   E
Sbjct: 116 YAEKYRLDD--------GIKLMQRAGIKVEYLNPDE 143


>gi|218708682|ref|YP_002416303.1| tRNA-specific adenosine deaminase [Vibrio splendidus LGP32]
 gi|218321701|emb|CAV17655.1| tRNA-specific adenosine deaminase [Vibrio splendidus LGP32]
          Length = 212

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 24/142 (16%)

Query: 31  VACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++VKDG VI  G     GC     HAE++ L +AG+          T YVTLEPC  
Sbjct: 50  VGAVLVKDGEVISEGWNRSIGCHDATAHAEIETLRKAGQALENYRLLDTTLYVTLEPC-- 107

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P CA  ++   ++R+V    D     +G  L     +       +   ++E E + 
Sbjct: 108 ----PMCAGALLHSRVKRIVFGAPDLKAGAAGTVLNLFESQASYHYADVEHGLLEEECRE 163

Query: 137 FLHAYLTRQ----VEKRSHITL 154
            L A+  R+     EKR+   L
Sbjct: 164 QLQAFFKRRRKEIKEKRNQERL 185


>gi|21231608|ref|NP_637525.1| hypothetical protein XCC2169 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768270|ref|YP_243032.1| hypothetical protein XC_1949 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188991407|ref|YP_001903417.1| Putative cytidine / deoxycytidylate deaminase family protein
           [Xanthomonas campestris pv. campestris str. B100]
 gi|21113299|gb|AAM41449.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573602|gb|AAY49012.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167733167|emb|CAP51365.1| Putative cytidine / deoxycytidylate deaminase family protein
           [Xanthomonas campestris pv. campestris]
          Length = 171

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 50/118 (42%), Gaps = 15/118 (12%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
             D ++M+ ALR +          P  A L+   G ++G G    + ++    HAE+ A+
Sbjct: 15  QIDQQWMTHALRLAERAERDYDEIPVGAVLVDPTGALLGEGWNFNIASHDPSAHAEIMAM 74

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            E G         G T YVTLEPC+       CA  +I   I RVV    DP     G
Sbjct: 75  REGGRRLANHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGACG 126


>gi|297559746|ref|YP_003678720.1| bifunctional deaminase-reductase domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296844194|gb|ADH66214.1| bifunctional deaminase-reductase domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 234

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 82/193 (42%), Gaps = 14/193 (7%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
            R +  L  A+S D  I   G   + ++      ++  LRA+ DAILVG GT+ AD+P L
Sbjct: 2   DRPYTILSCAMSVDGRIDDTGPERLRLSNEADFAEIDELRAECDAILVGAGTLRADNPGL 61

Query: 208 TCRLNGLQEHSP--------MRIILDPHFKLSLDSKIIKTALLAPVIIVTEN--DDPVLA 257
             R   L+E           ++ ++    +    ++   T     V+       D    A
Sbjct: 62  LVRSPLLRERRRERGRTAHLLKALVTRSGEFDPAARFFSTGDAGAVVYTGGAGVDTARRA 121

Query: 258 LAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
           LA R         +   D   ++ +L  L  RGV  LLVEGG  +   F+ S LVD + L
Sbjct: 122 LADRPAADPPAEVVDAGDPPTVRAVLADLADRGVGRLLVEGGGHIHTLFLTSGLVDELRL 181

Query: 314 YRSQIVIGEGGIP 326
             +  ++G+   P
Sbjct: 182 AVAPFLVGQEDAP 194


>gi|153807590|ref|ZP_01960258.1| hypothetical protein BACCAC_01872 [Bacteroides caccae ATCC 43185]
 gi|149129952|gb|EDM21164.1| hypothetical protein BACCAC_01872 [Bacteroides caccae ATCC 43185]
          Length = 148

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 49/120 (40%), Gaps = 34/120 (28%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53
           S  D R++  A   S W          V  LIVKD ++I  G   Y G P          
Sbjct: 8   SELDKRYIRMA---SIWAENSYCQRRKVGALIVKDKMIISDG---YNGTPSGFENVCEDE 61

Query: 54  ---------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                    HAE  A+ +   +   + GAT YVT  PC        CA+ II+ GI+RVV
Sbjct: 62  NNLTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CAKLIIQAGIKRVV 115


>gi|149236051|ref|XP_001523903.1| cytosine deaminase [Lodderomyces elongisporus NRRL YB-4239]
 gi|146452279|gb|EDK46535.1| cytosine deaminase [Lodderomyces elongisporus NRRL YB-4239]
          Length = 160

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 18/127 (14%)

Query: 29  PSVACLIVKDGIVIGRGVT--AYGGCP--HAEVQALEEAGEEA----RGATAYVTLEPCS 80
           P   CLI KDG V+GRG       G P  H E+  LE AG       +  T Y TL PC+
Sbjct: 36  PIGGCLIHKDGRVLGRGYNKRVQNGSPILHGEMSVLENAGRLPHSIYKDCTMYTTLSPCN 95

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
                  C   I+  GI+RVV+  +D  V     G + L Q G+ +  + +   K  L  
Sbjct: 96  M------CTGAILLYGIKRVVMGENDTFV----GGEELLKQNGVELVNLQDEGCKEILTK 145

Query: 141 YLTRQVE 147
           ++  + E
Sbjct: 146 FIQEKPE 152


>gi|153216547|ref|ZP_01950510.1| zinc-binding domain protein [Vibrio cholerae 1587]
 gi|124114222|gb|EAY33042.1| zinc-binding domain protein [Vibrio cholerae 1587]
          Length = 193

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 23/139 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V+DG +I  G    +T +    HAE++ + +AG+          T YVTLEPC  
Sbjct: 50  VGAVLVRDGEIIAEGCNGSITNHDATAHAEIEVIRKAGKALSNYRLLDTTLYVTLEPC-- 107

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136
               P CA  ++   ++R+V    D     +G  +   S +       +   ++E E + 
Sbjct: 108 ----PMCAGALLHSRVKRIVYGAPDLKAGAAGTVMDLFSSQAAYHYATVEKGLLEEECRA 163

Query: 137 FLHAYLTRQVEKRSHITLK 155
            L A+  R   +R  I  K
Sbjct: 164 QLQAFFQR---RRKEIKAK 179


>gi|66047004|ref|YP_236845.1| cytosine deaminase [Pseudomonas syringae pv. syringae B728a]
 gi|289676943|ref|ZP_06497833.1| cytosine deaminase [Pseudomonas syringae pv. syringae FF5]
 gi|302187712|ref|ZP_07264385.1| cytosine deaminase [Pseudomonas syringae pv. syringae 642]
 gi|63257711|gb|AAY38807.1| Cytosine deaminase [Pseudomonas syringae pv. syringae B728a]
 gi|330977861|gb|EGH77764.1| cytosine deaminase [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 145

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 47/101 (46%), Gaps = 16/101 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65
           FM AA  F    +GL      +  +IV  G +IGRG    V       H E+ ALE AG 
Sbjct: 4   FMQAA--FDEAQLGLKEGGIPIGSVIVHGGKIIGRGHNRRVQEGSATKHGEMDALENAGR 61

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           +     R +  Y TL PC+       C+  I+  GIR+V++
Sbjct: 62  QPASVYRDSVLYTTLSPCAM------CSGAILLYGIRKVII 96


>gi|15676827|ref|NP_273972.1| cytidine and deoxycytidylate deaminase family protein [Neisseria
           meningitidis MC58]
 gi|7226171|gb|AAF41340.1| cytidine and deoxycytidylate deaminase family protein [Neisseria
           meningitidis MC58]
 gi|316985330|gb|EFV64279.1| cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Neisseria meningitidis H44/76]
 gi|325140176|gb|EGC62703.1| tRNA-specific adenosine deaminase [Neisseria meningitidis CU385]
 gi|325200381|gb|ADY95836.1| tRNA-specific adenosine deaminase [Neisseria meningitidis H44/76]
          Length = 239

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 28/138 (20%)

Query: 2   PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52
           PV++F  +     FM  ALR +            V  +IV DG +I    +A+  C    
Sbjct: 82  PVAAFPPQEEMEHFMCEALRQAEQSSA--DGEIPVGAVIVSDGKIIA---SAHNTCIADC 136

Query: 53  ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
               HAE+ AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+   
Sbjct: 137 NVSRHAEINALAQAGREIQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 190

Query: 105 DDPDVRVSGRGLQWLSQK 122
            +P    +G  +   + K
Sbjct: 191 AEPKTGAAGSIVNLFADK 208


>gi|327483608|gb|AEA78015.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae LMA3894-4]
          Length = 175

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 23/139 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V+DG +I  G    +T +    HAE++ + +AG+          T YVTLEPC  
Sbjct: 32  VGAVLVRDGEIIAEGWNGSITNHDATAHAEIEVIRKAGKALSNYRLLDTTLYVTLEPC-- 89

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136
               P CA  ++   ++R+V    D     +G  L   S +       +   ++E E + 
Sbjct: 90  ----PMCAGALLHSRVKRIVYGAPDLKAGAAGTVLDLFSSQAAYHYATVEKGLLEEECRA 145

Query: 137 FLHAYLTRQVEKRSHITLK 155
            L A+  R   +R  I  K
Sbjct: 146 QLQAFFQR---RRKEIKAK 161


>gi|237808810|ref|YP_002893250.1| CMP/dCMP deaminase zinc-binding [Tolumonas auensis DSM 9187]
 gi|237501071|gb|ACQ93664.1| CMP/dCMP deaminase zinc-binding [Tolumonas auensis DSM 9187]
          Length = 164

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 17/122 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           MP S  D  +M  A++ +R      +    V  ++V +  VIG G    +  +  C HAE
Sbjct: 1   MPQSEQDIHWMQYAMQLAR--RAEEAGEVPVGAVLVLNNEVIGEGWNLSICRHDPCAHAE 58

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ +AG+        GAT YVTLEPC        CA  +I   I R+V    D     
Sbjct: 59  IMAIRQAGQNIGNYRLLGATLYVTLEPCIM------CAGAMIHSRIERLVYGASDLKTGA 112

Query: 112 SG 113
           +G
Sbjct: 113 AG 114


>gi|209694336|ref|YP_002262264.1| tRNA-specific adenosine deaminase [Aliivibrio salmonicida LFI1238]
 gi|208008287|emb|CAQ78433.1| tRNA-specific adenosine deaminase [Aliivibrio salmonicida LFI1238]
          Length = 177

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 33/152 (21%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  +IV +G +IG G    +  +    HAE+ A+++AG+         AT YVTLEPC  
Sbjct: 32  VGAVIVLNGEIIGEGWNRSIGTHDATAHAEMMAIKQAGQTVENYRLVNATLYVTLEPC-- 89

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS----------QKGIIVDRMME 131
               P CA  I++  I++V     D     SG  +   +          + G++ D   E
Sbjct: 90  ----PMCAGAIVQSRIKQVFFGAADLKTGASGSVINLFTAATAFHFVECESGLMADECRE 145

Query: 132 SEGKIF--------LHAYLTRQVEKRSHITLK 155
                F            L R+VEK+  +  K
Sbjct: 146 QLQAFFKRRRKEKKEEKQLQREVEKKDELESK 177


>gi|317493152|ref|ZP_07951575.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918812|gb|EFV40148.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 170

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 71/160 (44%), Gaps = 26/160 (16%)

Query: 7   DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
           DA +M  AL  ++  W  G       V  ++V D  VIG+G    +T +    HAE+ AL
Sbjct: 6   DAYWMKQALALAQKAWEQGEVP----VGAILVLDDEVIGQGWNRPITRHDPTAHAEIMAL 61

Query: 61  EEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           ++ G+  +      AT YVTLEPC        CA  ++   I+R+V    D     +G  
Sbjct: 62  QQGGQIVQNYRLLNATLYVTLEPCVM------CAGAMVHSRIKRLVYGASDLKTGAAGSL 115

Query: 116 LQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRS 150
           L  L   G+     I   +M +E    L  +  ++ E++ 
Sbjct: 116 LDVLRHPGMNHQIEITAGVMANECSEMLSQFFQQRREQKK 155


>gi|86145643|ref|ZP_01063973.1| Cytosine/adenosine deaminase [Vibrio sp. MED222]
 gi|85836614|gb|EAQ54740.1| Cytosine/adenosine deaminase [Vibrio sp. MED222]
          Length = 212

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 20/129 (15%)

Query: 31  VACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++VKDG VI  G     GC     HAE++ L +AG+          T YVTLEPC  
Sbjct: 50  VGAVLVKDGEVISEGWNRSIGCHDATAHAEIETLRKAGQALENYRLLDTTLYVTLEPC-- 107

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P CA  ++   ++R+V    D     +G  L     +       +   ++E E + 
Sbjct: 108 ----PMCAGALLHSRVKRIVFGAPDLKAGAAGTVLNLFESQASYHYADVEHGLLEEECRE 163

Query: 137 FLHAYLTRQ 145
            L A+  R+
Sbjct: 164 QLQAFFKRR 172


>gi|325134098|gb|EGC56751.1| tRNA-specific adenosine deaminase [Neisseria meningitidis M13399]
 gi|325206234|gb|ADZ01687.1| tRNA-specific adenosine deaminase [Neisseria meningitidis
           M04-240196]
          Length = 163

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 28/138 (20%)

Query: 2   PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52
           PV++F  +     FM  ALR +            V  +IV DG +I    +A+  C    
Sbjct: 6   PVAAFPPQEEMEHFMREALRQAEQSAADGEI--PVGAVIVSDGKIIA---SAHNTCIADC 60

Query: 53  ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
               HAE+ AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+   
Sbjct: 61  NVSCHAEINALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 114

Query: 105 DDPDVRVSGRGLQWLSQK 122
            +P    +G  +   + K
Sbjct: 115 AEPKTGAAGSIVNLFADK 132


>gi|295089886|emb|CBK75993.1| Cytosine/adenosine deaminases [Clostridium cf. saccharolyticum K10]
          Length = 214

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 21/129 (16%)

Query: 7   DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
           D R+M  A+R ++  W +G       + C+IV  G +IGRG     T      HAE+ A+
Sbjct: 42  DERYMREAVRQAKKAWALGEVP----IGCVIVHRGKIIGRGYNRRTTDGNVLAHAEILAI 97

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A            T YVTLEPC      P CA  I++  I +VV+   +P    +G  
Sbjct: 98  RKACRIIGDWRLEECTMYVTLEPC------PMCAGAIVQARIPKVVIGCMNPKAGCAGSV 151

Query: 116 LQWLSQKGI 124
           L  L ++G 
Sbjct: 152 LDLLHEEGF 160


>gi|229525486|ref|ZP_04414891.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae bv. albensis
           VL426]
 gi|229339067|gb|EEO04084.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae bv. albensis
           VL426]
          Length = 193

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 23/146 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           V  ++V+DG +I  G    +T +    HAE++ + +AG+          T YVTLEPC  
Sbjct: 50  VGAVLVRDGEIIAEGWNSSITNHDATAHAEIEVIRKAGKVLSNYRLLDTTLYVTLEPC-- 107

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136
               P CA  ++   ++R+V    D     +G  +   S +       +   ++E E + 
Sbjct: 108 ----PMCAGALLHSRVKRIVYGAPDLKAGAAGTVMDLFSSQAAYHYATVEKGLLEEECRA 163

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDN 162
            L A+  R   +R  I  K    + N
Sbjct: 164 QLQAFFQR---RRKEIKAKRDAERKN 186


>gi|284033054|ref|YP_003382985.1| bifunctional deaminase-reductase domain-containing protein
           [Kribbella flavida DSM 17836]
 gi|283812347|gb|ADB34186.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
           DSM 17836]
          Length = 242

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 82/192 (42%), Gaps = 16/192 (8%)

Query: 145 QVEKRS--HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV-- 200
           QV  RS  H+      S D  + + G  S  ++G   +     LR  SD +LVG GTV  
Sbjct: 17  QVADRSVPHLRCNFVTSIDGAMEVEG-KSKALSGAADQEIFGKLRMLSDVVLVGAGTVRI 75

Query: 201 -------LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD 253
                  L+       R  GL E+ P   I+     L   S  +  A + P I+ T    
Sbjct: 76  EGYRPLRLSAARREWRRAQGLPEN-PTLAIVSSRLDLDPASPFLAEAPVRP-IVFTHTAS 133

Query: 254 PVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311
           P+ A     +  +++ C     DL+ ++  LV RG+  +L EGG  +  +   + LVD +
Sbjct: 134 PLDAREALAEVADVVVCGRAGVDLRAVMKTLVERGLPQVLSEGGPHLLGALTAADLVDEM 193

Query: 312 ILYRSQIVIGEG 323
            L  + ++ G G
Sbjct: 194 CLSLAPVLAGPG 205


>gi|169630059|ref|YP_001703708.1| hypothetical protein MAB_2976 [Mycobacterium abscessus ATCC 19977]
 gi|169242026|emb|CAM63054.1| Conserved hypothetical protein (possible reductase) [Mycobacterium
           abscessus]
          Length = 260

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 13/151 (8%)

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL--------QEHSPMRIILDPHFKLSLDSKII 237
           +RA +D ILVG GTV A+         GL        Q+  P   ++     +   + + 
Sbjct: 79  MRANADVILVGSGTVRAERYHGAHLPVGLRQRRQSRGQDEVPTIAVVTASGAVDPSTPLF 138

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEG 294
             + +AP+++ + +  P   +A R     I+     D  DL   L  L  RG++ +L EG
Sbjct: 139 NESEVAPIVVTSASGAP--HVASRVPGAQILVSGDGDTVDLPAALATLHARGLSRVLCEG 196

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           G A+  + +++ LVD + L  +   IG  G+
Sbjct: 197 GPALLGTLLSAHLVDELCLTIAPTTIGGAGL 227


>gi|313200758|ref|YP_004039416.1| cmp/dcmp deaminase zinc-binding protein [Methylovorus sp. MP688]
 gi|312440074|gb|ADQ84180.1| CMP/dCMP deaminase zinc-binding protein [Methylovorus sp. MP688]
          Length = 175

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 15/100 (15%)

Query: 31  VACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           V  L+V DG +IGRG+ A    +    HAE+QA+ EA          G T YVTLEPC+ 
Sbjct: 38  VGALVVLDGAIIGRGMNAPIGRHDPTAHAEIQAMREAASAIGNYRLVGCTLYVTLEPCAM 97

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                 C+  I    I R+V    DP     G  +  +++
Sbjct: 98  ------CSGAIQHARIARLVYGARDPKTGSCGSVIDLMAE 131


>gi|296314748|ref|ZP_06864689.1| tRNA-specific adenosine deaminase [Neisseria polysaccharea ATCC
           43768]
 gi|296838389|gb|EFH22327.1| tRNA-specific adenosine deaminase [Neisseria polysaccharea ATCC
           43768]
          Length = 239

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 28/138 (20%)

Query: 2   PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--- 53
           PV++F  +     FM  ALR +            V  +IV DG +I    +A+  C    
Sbjct: 82  PVAAFPPQEEMEHFMREALRQAEQSAA--DGEIPVGAVIVSDGKIIA---SAHNTCIADC 136

Query: 54  ----HAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
               HAE+ AL +AG E +     G   Y+TLEPC+       CA  +I+  I+RV+   
Sbjct: 137 NVSCHAEINALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIKRVIYGA 190

Query: 105 DDPDVRVSGRGLQWLSQK 122
            +P    +G  +   + K
Sbjct: 191 AEPKTGAAGSIVNLFADK 208


>gi|229513031|ref|ZP_04402497.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae TMA 21]
 gi|254285542|ref|ZP_04960506.1| zinc-binding domain protein [Vibrio cholerae AM-19226]
 gi|150424404|gb|EDN16341.1| zinc-binding domain protein [Vibrio cholerae AM-19226]
 gi|229349924|gb|EEO14878.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae TMA 21]
          Length = 193

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 23/139 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V+DG +I  G    +T +    HAE++ + +AG+          T YVTLEPC  
Sbjct: 50  VGAVLVRDGEIIAEGWNGSITNHDATAHAEIEVIRKAGKALSNYRLLDTTLYVTLEPC-- 107

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136
               P CA  ++   ++R+V    D     +G  +   S +       +   ++E E + 
Sbjct: 108 ----PMCAGALLHSRVKRIVYGAPDLKAGAAGTVMDLFSSQAAYHYATVEKGLLEEECRA 163

Query: 137 FLHAYLTRQVEKRSHITLK 155
            L A+  R   +R  I  K
Sbjct: 164 QLQAFFQR---RRKEIKAK 179


>gi|255693361|ref|ZP_05417036.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides
           finegoldii DSM 17565]
 gi|260620838|gb|EEX43709.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides
           finegoldii DSM 17565]
          Length = 149

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 49/120 (40%), Gaps = 34/120 (28%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53
           S  D R++  A   S W          V  LIVKD ++I  G   Y G P          
Sbjct: 8   SELDKRYIRMA---SIWAENSYCQRRKVGALIVKDKMIISDG---YNGTPSGFENVCEDE 61

Query: 54  ---------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                    HAE  A+ +   +   + GAT YVT  PC        CA+ II+ GI+RVV
Sbjct: 62  NNVTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CAKLIIQAGIKRVV 115


>gi|71733993|ref|YP_273732.1| cytosine deaminase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257486822|ref|ZP_05640863.1| cytosine deaminase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289625968|ref|ZP_06458922.1| cytosine deaminase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289647969|ref|ZP_06479312.1| cytosine deaminase [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298488192|ref|ZP_07006229.1| Cytosine deaminase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|71554546|gb|AAZ33757.1| cytosine deaminase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|298157471|gb|EFH98554.1| Cytosine deaminase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|320325406|gb|EFW81471.1| cytosine deaminase [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327453|gb|EFW83466.1| cytosine deaminase [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330869365|gb|EGH04074.1| cytosine deaminase [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330877290|gb|EGH11439.1| cytosine deaminase [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330988661|gb|EGH86764.1| cytosine deaminase [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331010292|gb|EGH90348.1| cytosine deaminase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 145

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 16/101 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65
           FM AA+      +GL      +  +IV +G +IGRG    V       H E+ ALE AG 
Sbjct: 4   FMQAAI--DEAQLGLKEGGIPIGSVIVHEGKIIGRGHNRRVQEGSATRHGEMDALENAGR 61

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           +     R A  Y TL PC+       C+  I+  GIR+V+V
Sbjct: 62  QPARVYRDAVLYTTLSPCAM------CSGAILLYGIRKVIV 96


>gi|254225102|ref|ZP_04918716.1| zinc-binding domain protein [Vibrio cholerae V51]
 gi|125622489|gb|EAZ50809.1| zinc-binding domain protein [Vibrio cholerae V51]
          Length = 193

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 23/139 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V+DG +I  G    +T +    HAE++ + +AG+          T YVTLEPC  
Sbjct: 50  VGAVLVRDGEIIAEGWNGSITNHDATAHAEIEVIRKAGKALSNYRLLDTTLYVTLEPC-- 107

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136
               P CA  ++   ++R+V    D     +G  +   S +       +   ++E E + 
Sbjct: 108 ----PMCAGALLHSRVKRIVYGAPDLKAGAAGTVMDLFSSQAAYHYATVEKGLLEEECRA 163

Query: 137 FLHAYLTRQVEKRSHITLK 155
            L A+  R   +R  I  K
Sbjct: 164 QLQAFFQR---RRKEIKAK 179


>gi|218129661|ref|ZP_03458465.1| hypothetical protein BACEGG_01240 [Bacteroides eggerthii DSM 20697]
 gi|317477506|ref|ZP_07936731.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides eggerthii 1_2_48FAA]
 gi|217988391|gb|EEC54714.1| hypothetical protein BACEGG_01240 [Bacteroides eggerthii DSM 20697]
 gi|316906307|gb|EFV28036.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides eggerthii 1_2_48FAA]
          Length = 145

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 49/119 (41%), Gaps = 34/119 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           + D R++  A   S W          V  LIVKD ++I  G   Y G P           
Sbjct: 11  ALDKRYIRMA---SIWAENSYCQRRQVGALIVKDKMIISDG---YNGTPSGFENVCEDEN 64

Query: 54  --------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                   HAE  A+ +   +   + GAT YVT  PC        CA+ II+ GI+RVV
Sbjct: 65  NITKPYVLHAEANAITKIARSNNSSNGATMYVTASPCIE------CAKLIIQAGIKRVV 117


>gi|325958148|ref|YP_004289614.1| Cytosine deaminase [Methanobacterium sp. AL-21]
 gi|325329580|gb|ADZ08642.1| Cytosine deaminase [Methanobacterium sp. AL-21]
          Length = 157

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 16/107 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59
           S  D +FM  AL+ ++    L S    +  ++VKDG+++GRG    +       HAE+  
Sbjct: 7   SEDDYKFMMEALKEAK--KSLESGGIPIGAILVKDGVIVGRGHNNLLQKNSTILHAEMDC 64

Query: 60  LEEA----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           +E +    G++ + +T Y TL PC        C+  II   I RVV+
Sbjct: 65  IENSGRLKGKDYKRSTLYTTLSPCEM------CSGTIILYKISRVVI 105


>gi|330971095|gb|EGH71161.1| cytosine deaminase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 145

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 47/101 (46%), Gaps = 16/101 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65
           FM AA  F    +GL      +  +IV  G +IGRG    V       H E+ ALE AG 
Sbjct: 4   FMQAA--FDEAQLGLKEGGIPIGSVIVHGGKIIGRGHNRRVQEGSATKHGEMDALENAGR 61

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           +     R +  Y TL PC+       C+  I+  GIR+V++
Sbjct: 62  QPASVYRDSVLYTTLSPCAM------CSGAILLYGIRKVII 96


>gi|213585178|ref|ZP_03367004.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
          deaminase/5-amino-6-(5-phosphoribosylamino)uracil
          reductase [Salmonella enterica subsp. enterica serovar
          Typhi str. E98-0664]
          Length = 69

 Score = 46.6 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 32/54 (59%)

Query: 7  DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
          D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL
Sbjct: 3  DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHAL 56


>gi|153830778|ref|ZP_01983445.1| zinc-binding domain protein [Vibrio cholerae 623-39]
 gi|148873734|gb|EDL71869.1| zinc-binding domain protein [Vibrio cholerae 623-39]
          Length = 193

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 23/139 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V+DG +I  G    +T +    HAE++ + +AG+          T YVTLEPC  
Sbjct: 50  VGAVLVRDGEIIAEGWNGSITNHDATAHAEIEVIRKAGKALSNYRLLDTTLYVTLEPC-- 107

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136
               P CA  ++   ++R+V    D     +G  +   S +       +   ++E E + 
Sbjct: 108 ----PMCAGALLHSRVKRIVYGAPDLKAGAAGTVMDLFSSQAAYHYATVEKGLLEEECRA 163

Query: 137 FLHAYLTRQVEKRSHITLK 155
            L A+  R   +R  I  K
Sbjct: 164 QLQAFFQR---RRKEIKAK 179


>gi|237798885|ref|ZP_04587346.1| cytosine deaminase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021739|gb|EGI01796.1| cytosine deaminase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 145

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 46/101 (45%), Gaps = 16/101 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65
           FM AA  F     G       +  +IV DG +IGRG    V       H E+ ALE AG 
Sbjct: 4   FMRAA--FEEAQHGQEEGGIPIGSVIVHDGKIIGRGRNRRVQNASATLHGEMDALENAGR 61

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           +     R A  Y TL PC+       C+  I+  GIR+V+V
Sbjct: 62  QPASVYREAVLYTTLSPCAM------CSGAILLYGIRKVIV 96


>gi|218283248|ref|ZP_03489309.1| hypothetical protein EUBIFOR_01897 [Eubacterium biforme DSM 3989]
 gi|218216003|gb|EEC89541.1| hypothetical protein EUBIFOR_01897 [Eubacterium biforme DSM 3989]
          Length = 158

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 17/110 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D ++M  A++ ++     +     + C+IVKD  +I RG     T      HAE+ A+++
Sbjct: 5   DVKWMKEAIKQAK--KAESYDEVPIGCVIVKDDKIIARGYNKRETLQQSIAHAEIMAIQK 62

Query: 63  AGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           A ++           YVTLEPC      P CA  II+  I+ VV    DP
Sbjct: 63  ACKKLGTWRLEDCVLYVTLEPC------PMCAGAIIQSRIKEVVYGASDP 106


>gi|302879427|ref|YP_003847991.1| CMP/dCMP deaminase zinc-binding [Gallionella capsiferriformans
           ES-2]
 gi|302582216|gb|ADL56227.1| CMP/dCMP deaminase zinc-binding [Gallionella capsiferriformans
           ES-2]
          Length = 240

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 15/101 (14%)

Query: 31  VACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           V  ++VKDG +IGRG  A    +    HAE+QAL  A +        G   +VTLEPC  
Sbjct: 100 VGAVVVKDGQIIGRGYNAPISLHDPSAHAEMQALRAAAQYLGNYRLVGCELFVTLEPCVM 159

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                 CA  I+   IRR+V    D    V G  L   +++
Sbjct: 160 ------CAGAIMHARIRRLVYGASDFKTGVCGSLLDLFAEQ 194


>gi|254389244|ref|ZP_05004473.1| riboflavin/cytosine deaminase [Streptomyces clavuligerus ATCC
           27064]
 gi|326444934|ref|ZP_08219668.1| putative deaminase [Streptomyces clavuligerus ATCC 27064]
 gi|197702960|gb|EDY48772.1| riboflavin/cytosine deaminase [Streptomyces clavuligerus ATCC
           27064]
          Length = 154

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 13/130 (10%)

Query: 15  LRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYG--GCP--HAEVQALEE-AGE 65
           LR+ +  +GL +  P  A       +++G G     T Y     P  HAE  AL +  G 
Sbjct: 10  LRWMQHAIGLAALCPPAAGAYSVGAVIVGEGGAELATGYSREADPRGHAEEAALAKLPGG 69

Query: 66  EARGATA--YVTLEPCSHYGRS-PPCAQFIIECGIRRVVVCVDDPDVRVSG-RGLQWLSQ 121
           + R ATA  Y TLEPCS       PCA  I+  GI RVV+   +P+  V+   G++ L  
Sbjct: 70  DLRLATATIYSTLEPCSQRSADRTPCAGLILRAGIPRVVIAWREPNHFVTDCVGVEQLQA 129

Query: 122 KGIIVDRMME 131
            G+ V  M E
Sbjct: 130 AGVTVVEMPE 139


>gi|167765189|ref|ZP_02437302.1| hypothetical protein BACSTE_03575 [Bacteroides stercoris ATCC
           43183]
 gi|167696817|gb|EDS13396.1| hypothetical protein BACSTE_03575 [Bacteroides stercoris ATCC
           43183]
          Length = 145

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 49/119 (41%), Gaps = 34/119 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           + D R++  A   S W          V  LIVKD ++I  G   Y G P           
Sbjct: 11  ALDKRYIRMA---SIWAENSYCQRRQVGALIVKDKMIISDG---YNGTPSGFENVCEDEN 64

Query: 54  --------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                   HAE  A+ +   +   + GAT YVT  PC        CA+ II+ GI+RVV
Sbjct: 65  NLTKPYVLHAEANAITKIARSNNSSNGATMYVTASPCIE------CAKLIIQAGIKRVV 117


>gi|119946930|ref|YP_944610.1| CMP/dCMP deaminase, zinc-binding [Psychromonas ingrahamii 37]
 gi|119865534|gb|ABM05011.1| CMP/dCMP deaminase, zinc-binding [Psychromonas ingrahamii 37]
          Length = 176

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  +IVKD  ++  G    +  +  C HAE+ A++ AG++ +       T YVTLEPC+ 
Sbjct: 36  VGAVIVKDNKIVAEGWNLSIINHNACAHAEIMAIQSAGQKIQNYRLIDCTLYVTLEPCA- 94

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 CA  ++   I+R+V    D     +G
Sbjct: 95  -----MCAGALVHARIKRLVYGAGDYKTGAAG 121


>gi|153813521|ref|ZP_01966189.1| hypothetical protein RUMOBE_03942 [Ruminococcus obeum ATCC 29174]
 gi|149830392|gb|EDM85484.1| hypothetical protein RUMOBE_03942 [Ruminococcus obeum ATCC 29174]
          Length = 164

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 22/158 (13%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEE 66
           M  A+R ++    L      + C+IV DG +I RG     T      HAE+ A+ +A ++
Sbjct: 1   MKEAIRQAKKARALEEV--PIGCVIVSDGKIIARGYNRRNTDKNTLSHAELNAIRKASKK 58

Query: 67  A-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL-- 119
                  G T YVTLEPC        CA  +++  I  VV+   +P    +G  L  L  
Sbjct: 59  LGDWRLEGCTMYVTLEPCQM------CAGALVQSRIDEVVIGSMNPKAGCAGSVLNLLQV 112

Query: 120 ---SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL 154
              + +  I   ++E E  + L  +     EK+  + +
Sbjct: 113 DNFNHQVKITRGVLEEECSMMLSDFFRELREKKKRLKM 150


>gi|297581254|ref|ZP_06943178.1| zinc-binding domain-containing protein [Vibrio cholerae RC385]
 gi|297534570|gb|EFH73407.1| zinc-binding domain-containing protein [Vibrio cholerae RC385]
          Length = 193

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 23/139 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V+DG +I  G    +T +    HAE++ + +AG+          T YVTLEPC  
Sbjct: 50  VGAVLVRDGEIIAEGWNGSITNHDATAHAEIEVIRKAGKALSNYRLLDTTLYVTLEPC-- 107

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136
               P CA  ++   ++R+V    D     +G  +   S +       +   ++E E + 
Sbjct: 108 ----PMCAGALLHSRVKRIVYGAPDLKAGAAGTVMDLFSSQAAYHYATVEKGLLEEECRA 163

Query: 137 FLHAYLTRQVEKRSHITLK 155
            L A+  R   +R  I  K
Sbjct: 164 QLQAFFQR---RRKEIKAK 179


>gi|330942469|gb|EGH45066.1| cytosine deaminase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 145

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 47/101 (46%), Gaps = 16/101 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65
           FM AAL      +GL      +  +IV  G +IGRG    V       H E+ ALE AG 
Sbjct: 4   FMQAAL--DEAQLGLKEGGIPIGSVIVHGGKIIGRGHNRRVQEGSATKHGEIDALENAGR 61

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           +     R +  Y TL PC+       C+  I+  GIR+V++
Sbjct: 62  QPASVYRDSVLYTTLSPCAM------CSGAILLYGIRKVII 96


>gi|294787884|ref|ZP_06753128.1| tRNA-specific adenosine deaminase [Simonsiella muelleri ATCC 29453]
 gi|294484177|gb|EFG31860.1| tRNA-specific adenosine deaminase [Simonsiella muelleri ATCC 29453]
          Length = 240

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 20/129 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  +++  G +I +     V  +  C HAE+Q +E+AG+  +         YVTLEPC+ 
Sbjct: 116 VGAILLHQGKIIAQAHNLCVAGHSVCQHAEIQVIEQAGKILQNYRLDECDLYVTLEPCAM 175

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
                 CA  I++  IRR++    +P +  +G  L   + K +     +   ++  E K 
Sbjct: 176 ------CAGAIVQARIRRLIFAAPEPKMGAAGSVLNIFANKRLNSHTAVKSGILADESKA 229

Query: 137 FLHAYLTRQ 145
            L  +  ++
Sbjct: 230 ILQQFFQQK 238


>gi|300775315|ref|ZP_07085177.1| competence protein ComEB [Chryseobacterium gleum ATCC 35910]
 gi|300506055|gb|EFK37191.1| competence protein ComEB [Chryseobacterium gleum ATCC 35910]
          Length = 140

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 38/155 (24%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------- 53
           ++ FD  ++  A     W          V  LIVKD ++I  G   Y G P         
Sbjct: 1   MNKFDKAYLKMA---QEWAKLSYCKRKQVGALIVKDRMIISDG---YNGTPSGFENCCED 54

Query: 54  ----------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                     HAE  A   L  + + A+GAT Y+TL PC        C++ I++ GI R+
Sbjct: 55  EEGKTHWYVLHAEANAILKLAASTQSAKGATLYLTLSPC------KECSKLILQAGITRL 108

Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135
           V   +  D      G+ +L    I ++++ + E K
Sbjct: 109 VYINEYSD----DDGISFLRNHNIEIEQISDCELK 139


>gi|255279741|ref|ZP_05344296.1| tRNA-specific adenosine deaminase [Bryantella formatexigens DSM
           14469]
 gi|255269514|gb|EET62719.1| tRNA-specific adenosine deaminase [Bryantella formatexigens DSM
           14469]
          Length = 166

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 17/119 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQA 59
           S    +FM  A+R ++    L      + C+IV+DG +I RG     T      HAE+ A
Sbjct: 6   SKIHEKFMREAIRQAKKAYALDEV--PIGCVIVQDGKIIARGYNRRNTDKNTLSHAELIA 63

Query: 60  LEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           +++A ++       G T Y+TLEPC        CA  +++  +   V+   +P    +G
Sbjct: 64  IKKAAKKTGDWRLEGCTMYITLEPCQM------CAGAMVQARLTEAVIGSMNPKAGCAG 116


>gi|262190740|ref|ZP_06048969.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae CT 5369-93]
 gi|262033384|gb|EEY51893.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae CT 5369-93]
          Length = 175

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 23/139 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V+DG +I  G    +T +    HAE++ + +AG+          T YVTLEPC  
Sbjct: 32  VGAVLVRDGEIIAEGWNGSITNHDATAHAEIEVIRKAGKALSNYRLLDTTLYVTLEPC-- 89

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136
               P CA  ++   ++R+V    D     +G  +   S +       +   ++E E + 
Sbjct: 90  ----PMCAGALLHSRVKRIVYGAPDLKAGAAGTVMDLFSSQAAYHYATVEKGLLEEECRA 145

Query: 137 FLHAYLTRQVEKRSHITLK 155
            L A+  R   +R  I  K
Sbjct: 146 QLQAFFQR---RRKEIKAK 161


>gi|71275637|ref|ZP_00651922.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Xylella
           fastidiosa Dixon]
 gi|71897819|ref|ZP_00680045.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Xylella
           fastidiosa Ann-1]
 gi|71163528|gb|EAO13245.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Xylella
           fastidiosa Dixon]
 gi|71732374|gb|EAO34428.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Xylella
           fastidiosa Ann-1]
          Length = 203

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 15/94 (15%)

Query: 29  PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPC 79
           P  A LI  +G ++G G    +T++    HAE+ AL  AG + R     G T YVTLEPC
Sbjct: 71  PVGAVLISPEGTLLGEGCNYNITSHDPSAHAEIMALRAAGHQLRNHRMPGCTLYVTLEPC 130

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                   CA  II   I  ++    DP     G
Sbjct: 131 LM------CAMAIIHARIAHLIYAAADPKTGACG 158


>gi|225575495|ref|ZP_03784105.1| hypothetical protein RUMHYD_03586 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037292|gb|EEG47538.1| hypothetical protein RUMHYD_03586 [Blautia hydrogenotrophica DSM
           10507]
          Length = 183

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 17/121 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
           ++M  A+R ++    L      + C+IV DG +I RG     T      HAE+ A+++A 
Sbjct: 29  KYMREAIRQAKKAWALDEV--PIGCVIVFDGKIIARGYNRRNTDRNTLSHAELNAIKKAS 86

Query: 65  EEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           ++       G T YVTLEPC        CA  I++  I  VV+   +P    +G  L  L
Sbjct: 87  KKLGDWRLEGCTMYVTLEPCQM------CAGAIVQARIDEVVIGSMNPKAGCAGSVLNLL 140

Query: 120 S 120
            
Sbjct: 141 D 141


>gi|160947058|ref|ZP_02094225.1| hypothetical protein PEPMIC_00989 [Parvimonas micra ATCC 33270]
 gi|158446192|gb|EDP23187.1| hypothetical protein PEPMIC_00989 [Parvimonas micra ATCC 33270]
          Length = 155

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 17/107 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
           S D  FM  AL+ ++           + C+IVKD  ++ RG    ++   G  HAE+ A+
Sbjct: 2   SRDEYFMDIALKEAKK--AYNKGEVPIGCVIVKDDKIVSRGHNQVLSKKSGVNHAEIIAI 59

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
            +AG++           +VTLEPC        CA  I+   I+RV++
Sbjct: 60  NKAGQKLGDFRLEDTELFVTLEPCCM------CAGAIVNSRIKRVII 100


>gi|307565320|ref|ZP_07627813.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella amnii CRIS 21A-A]
 gi|307345989|gb|EFN91333.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella amnii CRIS 21A-A]
          Length = 145

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 50/120 (41%), Gaps = 36/120 (30%)

Query: 5   SFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53
           S D R+    LR +R W          V  L+VK+ ++I  G   Y G P          
Sbjct: 7   SLDCRY----LRMARIWAENSYCQRRKVGTLVVKNKMIISDG---YNGTPSGFENVCEDS 59

Query: 54  ---------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                    HAE  A   L  +G  + GAT YVT  PC        CA+ II+ GI+R+V
Sbjct: 60  NNVTKPYVLHAEANAITKLARSGNNSEGATIYVTDAPCIE------CAKLIIQAGIKRIV 113


>gi|213026041|ref|ZP_03340488.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
          deaminase/5-amino-6-(5-phosphoribosylamino)uracil
          reductase [Salmonella enterica subsp. enterica serovar
          Typhi str. 404ty]
          Length = 59

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 32/56 (57%)

Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
          M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL   G +
Sbjct: 1  MARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMGGRQ 56


>gi|229495862|ref|ZP_04389588.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
           endodontalis ATCC 35406]
 gi|229317175|gb|EEN83082.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
           endodontalis ATCC 35406]
          Length = 146

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 50/119 (42%), Gaps = 36/119 (30%)

Query: 6   FDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            D R+    LR +R W      T   V  LIVKD ++I  G   Y G P           
Sbjct: 10  LDKRY----LRMARIWSENSYCTRRKVGALIVKDQMIISDG---YNGTPSGFENVCEDES 62

Query: 54  --------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                   HAE  A+ +   +G  + GAT Y+T  PC        CA+ II+  I+RVV
Sbjct: 63  GLTKPYVLHAEANAITKVACSGNNSDGATIYITASPCVE------CAKLIIQSKIKRVV 115


>gi|260945269|ref|XP_002616932.1| hypothetical protein CLUG_02376 [Clavispora lusitaniae ATCC 42720]
 gi|238848786|gb|EEQ38250.1| hypothetical protein CLUG_02376 [Clavispora lusitaniae ATCC 42720]
          Length = 590

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 61/135 (45%), Gaps = 12/135 (8%)

Query: 1   MPVSSFDAR--FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEV 57
            P  + D++  FM  AL  +R   G T T  +V  ++V DG V+  G +    G  HAE 
Sbjct: 433 FPSWALDSKRKFMELALENAR-KCGETQTQFNVGAVLVLDGQVLSTGHSRELPGNTHAEQ 491

Query: 58  QALEEAGEEA------RGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
            ALE+  E+        G   Y T+EPCS     + PC   II   I+   V V +PD  
Sbjct: 492 CALEKYFEKTGQRNVPEGTEIYTTMEPCSLRLSGNLPCVDRIIATNIKTCYVGVVEPDTF 551

Query: 111 VSGR-GLQWLSQKGI 124
           V    G   L + G+
Sbjct: 552 VENNTGQAKLREAGV 566


>gi|148981936|ref|ZP_01816576.1| cytosine/adenosine deaminase [Vibrionales bacterium SWAT-3]
 gi|145960698|gb|EDK26041.1| cytosine/adenosine deaminase [Vibrionales bacterium SWAT-3]
          Length = 181

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 17/94 (18%)

Query: 31  VACLIVKDGIVI----GRGVTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++VKDG VI     R + ++    HAEV+ L +AG   E  R    T YVTLEPC  
Sbjct: 32  VGAVLVKDGEVISEGWNRSIGSHDATAHAEVETLRKAGQVLENYRLLDTTLYVTLEPC-- 89

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
               P CA  ++   ++R+V     PD++    G
Sbjct: 90  ----PMCAGALLHSRVKRIVFGA--PDLKAGAAG 117


>gi|315225628|ref|ZP_07867437.1| competence protein ComEB [Capnocytophaga ochracea F0287]
 gi|314944445|gb|EFS96485.1| competence protein ComEB [Capnocytophaga ochracea F0287]
          Length = 146

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 38/148 (25%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
           +D  +M  A+ +++      S    V  +IVKD ++I  G   Y G P            
Sbjct: 12  YDKAYMRMAMEWAKLSY---SQRKQVGAIIVKDRMIISDG---YNGTPTGFDNCCEDEEG 65

Query: 54  -------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A+     + + + GAT Y+T+ PC        C++ I + GI+RVV  
Sbjct: 66  NTHWYVLHAEANAIMKVASSTQSSEGATLYITMSPC------KECSKLIYQSGIKRVVYK 119

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMME 131
               D      GL +L + G+ V  + E
Sbjct: 120 EGYRD----NEGLAFLEKAGVEVVHLEE 143


>gi|256391606|ref|YP_003113170.1| CMP/dCMP deaminase zinc-binding [Catenulispora acidiphila DSM
           44928]
 gi|256357832|gb|ACU71329.1| CMP/dCMP deaminase zinc-binding [Catenulispora acidiphila DSM
           44928]
          Length = 164

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 54  HAEVQALEEAGEEA---RGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           HAE  AL   G       GAT Y +LEPCS    R   C Q II  GIRRVV    +P +
Sbjct: 66  HAEESALNTLGPNHPRLSGATVYSSLEPCSIRKSRPLTCTQLIIASGIRRVVFAWREPSL 125

Query: 110 RVSG-RGLQWLSQKGIIVDRMMESE 133
            V   +G + L + GI V    E E
Sbjct: 126 LVEDCQGAELLREAGIEVVEFPEFE 150


>gi|205371946|ref|ZP_03224765.1| hypothetical protein Bcoam_00240 [Bacillus coahuilensis m4-4]
          Length = 160

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 15/99 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  +IVKDG VI  G     T      HAEV A+++A E+       GA  YVTLEPC  
Sbjct: 25  IGAVIVKDGEVIATGHNLRETTQNAITHAEVIAIQKACEKLGTWRLEGAELYVTLEPC-- 82

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
               P C+  I++  I +V+    DP    +G  +  L 
Sbjct: 83  ----PMCSGAIVQSRIEKVIYGAKDPKAGCAGSLMNLLQ 117


>gi|149190045|ref|ZP_01868322.1| cytosine/adenosine deaminase [Vibrio shilonii AK1]
 gi|148836075|gb|EDL53035.1| cytosine/adenosine deaminase [Vibrio shilonii AK1]
          Length = 178

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 19/118 (16%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D RFM  A+  +  H       P V  ++V+ G +I  G    +  +    HAE+Q + +
Sbjct: 14  DRRFMQRAMELAN-HAESEGEVP-VGAVLVRGGKIIAEGWNQSIGNHDATAHAEMQVIRK 71

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           AG+          T YVTLEPC      P CA  ++   ++RVV     PD++    G
Sbjct: 72  AGQNLENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVFGA--PDLKAGAAG 121


>gi|313905719|ref|ZP_07839079.1| Cof-like hydrolase [Eubacterium cellulosolvens 6]
 gi|313469426|gb|EFR64768.1| Cof-like hydrolase [Eubacterium cellulosolvens 6]
          Length = 450

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 17/114 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
           ++M AA+R ++    +      +  +IV+DG +I RG     T +    HAE+ AL +A 
Sbjct: 300 KYMRAAIREAKRAASIGEV--PIGAVIVRDGEIIARGYNRRNTDHNTLSHAELNALRKAS 357

Query: 65  EEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           ++       G T YVT+EPC        CA  +++  I +VV+    P    +G
Sbjct: 358 KKLGDWRLEGCTMYVTMEPCQM------CAGALVQSRIDKVVIGCMSPKTGCAG 405


>gi|255007771|ref|ZP_05279897.1| putative deoxycytidylate deaminase [Bacteroides fragilis 3_1_12]
 gi|313145475|ref|ZP_07807668.1| deoxycytidylate deaminase [Bacteroides fragilis 3_1_12]
 gi|313134242|gb|EFR51602.1| deoxycytidylate deaminase [Bacteroides fragilis 3_1_12]
          Length = 145

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 49/120 (40%), Gaps = 34/120 (28%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53
           S  D R++  A   + W          V  LIVKD ++I  G   Y G P          
Sbjct: 9   SDLDKRYIRMA---AIWSENSYCQRRKVGALIVKDKMIISDG---YNGTPSGFENICEDD 62

Query: 54  ---------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                    HAE  A+ +   +   + GAT YVT  PC        CA+ II+ GI+RVV
Sbjct: 63  NNVTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CAKLIIQAGIKRVV 116


>gi|291301495|ref|YP_003512773.1| bifunctional deaminase-reductase domain-containing protein
           [Stackebrandtia nassauensis DSM 44728]
 gi|290570715|gb|ADD43680.1| bifunctional deaminase-reductase domain protein [Stackebrandtia
           nassauensis DSM 44728]
          Length = 242

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 82/192 (42%), Gaps = 18/192 (9%)

Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV---------LADDPELTC 209
           S D  + + G  S  ++G        +LR + D ++VG GTV         L+ D     
Sbjct: 34  SADGAVEVNG-DSKALSGEDDMRVFRILRMRCDVLVVGAGTVRTDGYRALRLSQDRVEWR 92

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN-DDPVLALAFRKKNINII 268
           R  GL +H P+  ++     L LD+ + + A + P++I  E+ D   LA      ++   
Sbjct: 93  RAAGLPDH-PVMAVVSRSGILDLDTPLFREAPVRPIVITPEDLDAKRLAELSDVADVVAA 151

Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----- 323
                D  +    L  RG+  +L EGG  V      + LVD + L  S  + G G     
Sbjct: 152 GTGSVDFAEAFERLRQRGLRQILCEGGPHVFGEITAAGLVDELCLTLSPHLAGAGSGRIT 211

Query: 324 -GIPSPLEEGYL 334
            G PSPL+  +L
Sbjct: 212 AGPPSPLKRMHL 223


>gi|118580396|ref|YP_901646.1| cytosine deaminase [Pelobacter propionicus DSM 2379]
 gi|118503106|gb|ABK99588.1| Cytosine deaminase [Pelobacter propionicus DSM 2379]
          Length = 145

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 47/101 (46%), Gaps = 16/101 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65
           FM AAL  +R   GL      +  L+V  G V+GRG    V       HAE+ ALE AG 
Sbjct: 4   FMQAALEEAR--KGLAEGGIPIGSLVVHRGAVLGRGHNRRVQKGSVILHAEMDALENAGR 61

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                 R +  Y TL PC      P CA  I+  GI RVV+
Sbjct: 62  MPAAIYRESVLYTTLSPC------PMCAGAILLYGIPRVVI 96


>gi|254471099|ref|ZP_05084502.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Pseudovibrio sp. JE062]
 gi|211960241|gb|EEA95438.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Pseudovibrio sp. JE062]
          Length = 275

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 74/145 (51%), Gaps = 10/145 (6%)

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            +H LRA  DA++VG+GT +AD+P+LT R   +    P RI++DP+ ++  DS +++   
Sbjct: 101 HLHRLRALCDAVVVGVGTAVADNPQLTVR--HVSGRHPARIVIDPYGRMPRDSTLLQDNS 158

Query: 242 LAPVIIVTENDD---PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
              ++I   +     P     F+ +        C +++  L     R    +LVEGGA  
Sbjct: 159 TRRIVITRTDAHARYPEGVECFQLQPDAKGRLSCAEIRHAL-----REFRCILVEGGAWT 213

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323
              FI  +++D + L  + ++IG G
Sbjct: 214 LSRFIELKMIDRLHLMIAPLIIGSG 238


>gi|333030069|ref|ZP_08458130.1| CMP/dCMP deaminase zinc-binding [Bacteroides coprosuis DSM 18011]
 gi|332740666|gb|EGJ71148.1| CMP/dCMP deaminase zinc-binding [Bacteroides coprosuis DSM 18011]
          Length = 146

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 48/118 (40%), Gaps = 34/118 (28%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
            D R++  A   S W          V  LIVKD ++I  G   Y G P            
Sbjct: 14  LDTRYIRMA---SIWSENSYCIRRKVGALIVKDKMIISDG---YNGTPSGFENICEDDNN 67

Query: 54  -------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                  HAE  A+ +   +   + GAT YVT  PC        CA+ II+ GI+RVV
Sbjct: 68  TTKPYVLHAEANAITKIACSNNSSDGATMYVTAAPCIE------CAKLIIQAGIKRVV 119


>gi|289677917|ref|ZP_06498807.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae pv. syringae FF5]
 gi|330895911|gb|EGH28196.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 170

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 41/129 (31%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP--------HAEVQALEEAGE-----EARGATAYVTLE 77
           V  ++V++G +IGRG      CP        HAE+ A+ +A +        G+T YVTLE
Sbjct: 35  VGAVVVQNGEIIGRGYN----CPISGSDPSAHAEMVAIRDAAKALDNYRLPGSTLYVTLE 90

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
           PCS       CA  I+   + RVV    +P             + GI+     +S+G+ F
Sbjct: 91  PCSM------CAGLIVHSRVARVVYGALEP-------------KAGIV-----QSQGQFF 126

Query: 138 LHAYLTRQV 146
             A+L  +V
Sbjct: 127 SQAFLNHRV 135


>gi|154245980|ref|YP_001416938.1| deaminase-reductase domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154160065|gb|ABS67281.1| bifunctional deaminase-reductase domain protein [Xanthobacter
           autotrophicus Py2]
          Length = 282

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 91/189 (48%), Gaps = 26/189 (13%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           +R  +  ++  S D  I      S  I G  + + +H LRA  DA++VG+GTV+ADDP L
Sbjct: 45  ERPFVVAQLGQSLDGRIATPSGESKYINGPHALDHLHALRADVDAVVVGVGTVVADDPLL 104

Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSK-----------IIKTALLAPVIIVTENDDPVL 256
           T R   +   SP R+I+DP  +    ++           + +T + APV    E      
Sbjct: 105 TVRR--VAGRSPARVIIDPSGRADPAARCFAPDGARRLVLRRTGVAAPVAEGVEVVAMEG 162

Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
           A AF             +   +L  L  RG+T +LVEGGA    +F+ +  +D++ ++ S
Sbjct: 163 AGAF-------------EPAAMLDALAARGLTRILVEGGAHTLSAFLEAGCLDALHVFVS 209

Query: 317 QIVIGEGGI 325
            +++G G I
Sbjct: 210 PVILGAGRI 218


>gi|194366203|ref|YP_002028813.1| CMP/dCMP deaminase zinc-binding [Stenotrophomonas maltophilia
           R551-3]
 gi|194349007|gb|ACF52130.1| CMP/dCMP deaminase zinc-binding [Stenotrophomonas maltophilia
           R551-3]
          Length = 174

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 15/122 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           +PV   D  +M  AL  +          P  A L+  DG ++G G    + ++    HAE
Sbjct: 7   VPVHDTDEHWMRHALALAERAQREFDEIPVGAVLVSADGQLLGEGWNLNIASHDPSAHAE 66

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+   G+        G+T YVTLEPC+       CA  I+   + R+V    DP    
Sbjct: 67  IVAMRSGGKLLANHRLLGSTLYVTLEPCA------MCAMAIVHARVARLVYGASDPKTGA 120

Query: 112 SG 113
            G
Sbjct: 121 CG 122


>gi|149923193|ref|ZP_01911606.1| cytidine and deoxycytidylate deaminase zinc-binding domain protein
           [Plesiocystis pacifica SIR-1]
 gi|149815967|gb|EDM75483.1| cytidine and deoxycytidylate deaminase zinc-binding domain protein
           [Plesiocystis pacifica SIR-1]
          Length = 165

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 15/91 (16%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEAR-----GATAYVT 75
           T  +  V  L+V+DG ++G G       +    HAEV A+ EA  +AR     GAT YVT
Sbjct: 13  TRGDVPVGALVVRDGKILGVGFNTREQDHDPTGHAEVVAMREACRQARRWRLDGATLYVT 72

Query: 76  LEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           LEPC      P CA  ++   I R+V    D
Sbjct: 73  LEPC------PMCAGTLVNTRIARLVYGAHD 97


>gi|289208092|ref|YP_003460158.1| CMP/dCMP deaminase zinc-binding protein [Thioalkalivibrio sp.
           K90mix]
 gi|288943723|gb|ADC71422.1| CMP/dCMP deaminase zinc-binding protein [Thioalkalivibrio sp.
           K90mix]
          Length = 146

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 20/144 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65
           F+ AAL  +R   G       +  +I   G ++GRG    V +     HAE+ ALE AG 
Sbjct: 4   FLEAALDEAR--TGWDEGGIPIGSVIEHGGRIVGRGHNRRVQSGSAILHAEMDALENAGR 61

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +     R  T Y TL PC+       C+  I+  GI RVVV     +    G    WL  
Sbjct: 62  QPASVYRECTLYTTLSPCAM------CSGAIVLYGIPRVVV---GENATFMGE-EDWLRS 111

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQ 145
            G+ VD + ++  +  + A++ R 
Sbjct: 112 HGVQVDVLQDAACQELMTAFIERH 135


>gi|104782115|ref|YP_608613.1| cytosine deaminase [Pseudomonas entomophila L48]
 gi|95111102|emb|CAK15822.1| Cytosine deaminase [Pseudomonas entomophila L48]
          Length = 141

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 20/143 (13%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEE 66
           M AA+  +R   GL      +  ++V DG +IGRG    V       H E+ ALE AG +
Sbjct: 1   MQAAIDEAR--KGLEEGGIPIGSVLVHDGKIIGRGHNRRVQKGSAILHGEMDALENAGRQ 58

Query: 67  A----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                + AT Y TL PC+       C+  I+  GI+RVV+  ++  +       Q L  +
Sbjct: 59  PASVYQQATLYTTLSPCAM------CSGAILLYGIKRVVIGENETFLGEE----QLLKNR 108

Query: 123 GIIVDRMMESEGKIFLHAYLTRQ 145
           G+ +D   +   +  +  ++ ++
Sbjct: 109 GVALDVRHDHTCRTLMQQFIEKK 131


>gi|294657495|ref|XP_459803.2| DEHA2E11374p [Debaryomyces hansenii CBS767]
 gi|199432736|emb|CAG88042.2| DEHA2E11374p [Debaryomyces hansenii]
          Length = 582

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 10/125 (8%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEAGEEA 67
           ++M  AL  +    G T T  +V  ++V +G V+  G +    G  HAE  ALE+  E+ 
Sbjct: 435 KYMELALEMAN-KCGETQTQFNVGAVLVNNGEVLATGHSRELPGNTHAEQCALEKYFEQT 493

Query: 68  ------RGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRV-SGRGLQWL 119
                  G   Y T+EPCS     + PC   I+E  I+   V V +PD+ V +  G   L
Sbjct: 494 GKREVPAGTEIYTTMEPCSLRLSGNLPCVDRILETNIKTCFVGVVEPDIFVKNNSGYTKL 553

Query: 120 SQKGI 124
           +++ +
Sbjct: 554 TERDV 558


>gi|78485955|ref|YP_391880.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Thiomicrospira crunogena XCL-2]
 gi|78364241|gb|ABB42206.1| tRNA-adenosine deaminase [Thiomicrospira crunogena XCL-2]
          Length = 166

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 15/85 (17%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARGA-----TAYVTLEPCSH 81
           V  ++VKD  +I  G    + A+    HAEV AL +AG E         T YVTLEPC  
Sbjct: 36  VGAVLVKDSKLIAEGWNQTIQAHDPTAHAEVVALRKAGIEEENYRLNDLTLYVTLEPC-- 93

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDD 106
               P CA  ++   ++R+V+   D
Sbjct: 94  ----PMCAGAMVHARLKRLVIAAKD 114


>gi|119715918|ref|YP_922883.1| deaminase-reductase domain-containing protein [Nocardioides sp.
           JS614]
 gi|119536579|gb|ABL81196.1| bifunctional deaminase-reductase domain protein [Nocardioides sp.
           JS614]
          Length = 231

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 10/183 (5%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R +  L   +S D  +  A    + ++     ++V  +RA+SDAI+VG  TV  D+P L 
Sbjct: 4   RPYTLLSCGMSLDGYLDSASDQRLILSNDADLDRVDAVRAESDAIMVGAATVRNDNPRLL 63

Query: 209 CRLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
            R    ++         SP+++ +    +L    +   T     ++  T    P  A + 
Sbjct: 64  VRDQERRDERVSRGLKPSPLKVTVTCAGRLDPRGRFFTTGESEKLVYCTSGGAPE-ARSR 122

Query: 261 RKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
                 ++    R  ++++   L  RGV  L+VEGG  +   F+   L D + L  +   
Sbjct: 123 LGAVATVVDGGPRVTMRRMSEDLHERGVRRLMVEGGGTIHTQFLTEDLADELHLVVAPFF 182

Query: 320 IGE 322
           +G+
Sbjct: 183 VGD 185


>gi|241764554|ref|ZP_04762572.1| CMP/dCMP deaminase zinc-binding [Acidovorax delafieldii 2AN]
 gi|241365998|gb|EER60615.1| CMP/dCMP deaminase zinc-binding [Acidovorax delafieldii 2AN]
          Length = 454

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 25/150 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           V  ++VKDG VI  G    V ++    HAE+ AL  A E+       G T YVTLEPC+ 
Sbjct: 19  VGAVVVKDGQVIATGRNAPVQSHDPTAHAEIVALRAAAEQLGNYRLDGCTLYVTLEPCAM 78

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA- 140
                 C+  ++   + RVV    DP    +G  L        +++   + +G +  H  
Sbjct: 79  ------CSGAMLHARVPRVVFGAVDPKTGAAGSVLDLFGY--TVLNHHTQVQGGVLAHDC 130

Query: 141 -------YLTRQVEKRSHITLKIAVSQDNM 163
                  +  R+ ++RS    +  +  D +
Sbjct: 131 GALLSTFFRQRRAQQRSEAQARHPLRDDAL 160


>gi|218768019|ref|YP_002342531.1| putative cytosine deaminase [Neisseria meningitidis Z2491]
 gi|121052027|emb|CAM08336.1| putative cytosine deaminase [Neisseria meningitidis Z2491]
          Length = 239

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 28/138 (20%)

Query: 2   PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52
           PV++F  +     FM  ALR +            V  +IV DG +I    +A+  C    
Sbjct: 82  PVAAFPPQEEMEHFMCEALRQAEQSAA--DGEIPVGAVIVSDGKIIA---SAHNTCIADC 136

Query: 53  ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
               HAE+ AL +AG E +     G   Y+TLEPC+       CA  +I+  ++RV+   
Sbjct: 137 NVSRHAEINALAQAGREMQNYRLDGCDIYITLEPCAM------CASALIQARVKRVIYGA 190

Query: 105 DDPDVRVSGRGLQWLSQK 122
            +P    +G  +   + K
Sbjct: 191 GEPKTGAAGSIVNLFADK 208


>gi|302185724|ref|ZP_07262397.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae pv. syringae 642]
          Length = 169

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 41/129 (31%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP--------HAEVQALEEAGE-----EARGATAYVTLE 77
           V  ++V++G +IGRG      CP        HAE+ A+ +A +        G+T YVTLE
Sbjct: 34  VGAVVVQNGEIIGRGYN----CPISGSDPSAHAEMVAIRQAAKALDNYRLPGSTLYVTLE 89

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
           PCS       CA  I+   + RVV    +P             + GI+     +S+G+ F
Sbjct: 90  PCSM------CAGLIVHSRVARVVYGALEP-------------KAGIV-----QSQGQFF 125

Query: 138 LHAYLTRQV 146
             A+L  +V
Sbjct: 126 SQAFLNHRV 134


>gi|17230776|ref|NP_487324.1| cytosine deaminase [Nostoc sp. PCC 7120]
 gi|17132379|dbj|BAB74983.1| cytosine deaminase [Nostoc sp. PCC 7120]
          Length = 143

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 14/99 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65
           FM AA++ ++   G       +  ++VKDG ++GRG    V       HAE+  L  AG 
Sbjct: 4   FMQAAIQEAKQ--GRQEGGIPIGSVLVKDGKILGRGHNKRVQDRDPVTHAEIDCLRNAGR 61

Query: 66  --EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
               RG T Y TL PC        CA  +++ GI++V+V
Sbjct: 62  IGSYRGTTLYSTLMPCY------LCAGAVVQFGIKKVIV 94


>gi|329957030|ref|ZP_08297598.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides clarus YIT 12056]
 gi|328523787|gb|EGF50879.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides clarus YIT 12056]
          Length = 145

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 49/119 (41%), Gaps = 34/119 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           + D R++  A   S W          V  LIVKD ++I  G   Y G P           
Sbjct: 11  ALDKRYIRMA---SIWAENSYCQRRQVGALIVKDKMIISDG---YNGTPSGFENVCEDEN 64

Query: 54  --------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                   HAE  A+ +   +   + GAT YVT  PC        CA+ II+ GI+RVV
Sbjct: 65  NVTKPYVLHAEANAITKIARSNNSSNGATMYVTASPC------IECAKLIIQAGIKRVV 117


>gi|85857921|ref|YP_460123.1| tRNA-specific adenosine deaminase [Syntrophus aciditrophicus SB]
 gi|85721012|gb|ABC75955.1| tRNA-specific adenosine deaminase [Syntrophus aciditrophicus SB]
          Length = 187

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 17/110 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D R+M  AL  +R  +  +     +  +IV++  VI R     V  +    HAE+ A+ E
Sbjct: 28  DERWMRLALEEAR--LAASEGEVPIGAVIVRENEVIARSHNMPVDRHDPTAHAEILAIRE 85

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           A E+ +     G T YVTLEPC        CA  I++  ++R+V    DP
Sbjct: 86  AAEKMKNYRLTGMTLYVTLEPCIM------CAGAILQARLKRLVYGTGDP 129


>gi|54025280|ref|YP_119522.1| putative pyrimidine deaminase [Nocardia farcinica IFM 10152]
 gi|54016788|dbj|BAD58158.1| putative pyrimidine deaminase [Nocardia farcinica IFM 10152]
          Length = 149

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 8/121 (6%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGCP-HAEVQALEEAGEEA---RGATAYVTLEPCSHYGRS 85
           SV  +IV DGI I  G +       HAE  AL++          AT Y TLEPCS    +
Sbjct: 26  SVGAVIVADGIEIASGYSRETDLKVHAEEAALDKLDPHDPRLSRATIYSTLEPCSERATT 85

Query: 86  P--PCAQFIIECGIRRVVVCVDDPDVRVSG-RGLQWLSQKGIIVDRMME-SEGKIFLHAY 141
              PC   ++  GI RVV+   +P   V+   G++ L Q G+ V  + E +E  + ++ +
Sbjct: 86  TRLPCTDRVLAVGIPRVVIAWREPATFVADCVGVEKLEQSGVEVVELRELAEAAMAMNRH 145

Query: 142 L 142
           L
Sbjct: 146 L 146


>gi|189462145|ref|ZP_03010930.1| hypothetical protein BACCOP_02827 [Bacteroides coprocola DSM 17136]
 gi|189431118|gb|EDV00103.1| hypothetical protein BACCOP_02827 [Bacteroides coprocola DSM 17136]
          Length = 144

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 48/118 (40%), Gaps = 34/118 (28%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
            D R+M  A   + W          V  LIVK+ ++I  G   Y G P            
Sbjct: 11  LDKRYMQMA---TIWSENSYCNRRKVGALIVKNKMIISDG---YNGTPAGFENVCEDEHG 64

Query: 54  -------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                  HAE  A+ +   +   + GAT YVT  PC        CA+ II+ GI+RVV
Sbjct: 65  ITKPYVLHAEANAITKIARSNNSSEGATLYVTASPCIE------CAKLIIQAGIKRVV 116


>gi|58581831|ref|YP_200847.1| hypothetical protein XOO2208 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84623733|ref|YP_451105.1| hypothetical protein XOO_2076 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188576614|ref|YP_001913543.1| tRNA-specific adenosine deaminase [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|58426425|gb|AAW75462.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84367673|dbj|BAE68831.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188521066|gb|ACD59011.1| tRNA-specific adenosine deaminase [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 170

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 15/121 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57
           P ++ D  +M  AL  +          P  A ++  +G V+G G    + ++    HAE+
Sbjct: 11  PHAAIDVHWMQHALHLAECAERDHDEIPVGALIVGAEGNVLGEGWNFNIASHDPSAHAEI 70

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+ +AG         G T YVTLEPC+       CA  +I   I RVV    DP     
Sbjct: 71  VAMRDAGRRLSNHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGAC 124

Query: 113 G 113
           G
Sbjct: 125 G 125


>gi|330975928|gb|EGH75994.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 169

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 41/129 (31%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP--------HAEVQALEEAGE-----EARGATAYVTLE 77
           V  ++V++G +IGRG      CP        HAE+ A+ +A +        G+T YVTLE
Sbjct: 34  VGAVVVQNGEIIGRGYN----CPISGSDPSAHAEMVAIRDAAKALDNYRLPGSTLYVTLE 89

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
           PCS       CA  I+   + RVV    +P             + GI+     +S+G+ F
Sbjct: 90  PCSM------CAGLIVHSRVARVVYGALEP-------------KAGIV-----QSQGQFF 125

Query: 138 LHAYLTRQV 146
             A+L  +V
Sbjct: 126 SQAFLNHRV 134


>gi|160887077|ref|ZP_02068080.1| hypothetical protein BACOVA_05093 [Bacteroides ovatus ATCC 8483]
 gi|237721349|ref|ZP_04551830.1| deoxycytidylate deaminase [Bacteroides sp. 2_2_4]
 gi|260171610|ref|ZP_05758022.1| deoxycytidylate deaminase [Bacteroides sp. D2]
 gi|293369429|ref|ZP_06616014.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides ovatus SD CMC 3f]
 gi|299148576|ref|ZP_07041638.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
           3_1_23]
 gi|315919924|ref|ZP_07916164.1| deoxycytidylate deaminase [Bacteroides sp. D2]
 gi|156107488|gb|EDO09233.1| hypothetical protein BACOVA_05093 [Bacteroides ovatus ATCC 8483]
 gi|229449145|gb|EEO54936.1| deoxycytidylate deaminase [Bacteroides sp. 2_2_4]
 gi|292635596|gb|EFF54103.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides ovatus SD CMC 3f]
 gi|298513337|gb|EFI37224.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
           3_1_23]
 gi|313693799|gb|EFS30634.1| deoxycytidylate deaminase [Bacteroides sp. D2]
          Length = 149

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 48/118 (40%), Gaps = 34/118 (28%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
            D R++  A   S W          V  LIVKD ++I  G   Y G P            
Sbjct: 10  LDKRYIRMA---SIWAENSYCQRRKVGALIVKDKMIISDG---YNGTPSGFENVCEDENN 63

Query: 54  -------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                  HAE  A+ +   +   + GAT YVT  PC        CA+ II+ GI+RVV
Sbjct: 64  LTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CAKLIIQAGIKRVV 115


>gi|145229091|ref|XP_001388854.1| cytosine deaminase [Aspergillus niger CBS 513.88]
 gi|134054953|emb|CAK36962.1| unnamed protein product [Aspergillus niger]
          Length = 148

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 18/127 (14%)

Query: 29  PSVACLIVKDGIVIGRG--VTAYGGCP--HAEVQALEEAG----EEARGATAYVTLEPCS 80
           P  ACL+ KDG ++GRG  +    G P  HAE+ ALE +G        GAT Y TL PC 
Sbjct: 24  PIGACLVSKDGKILGRGHNMRVQKGSPVLHAEMSALENSGRLPASAYEGATMYTTLSPCD 83

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
                  C    I   ++RVVV  +   +     G  +L  +G  V  +  +E K  +  
Sbjct: 84  M------CTGACILYKVKRVVVGENKSFM----GGEDYLKSRGKEVVVLDNAECKQLMEK 133

Query: 141 YLTRQVE 147
           ++  + E
Sbjct: 134 FMKEKPE 140


>gi|282859489|ref|ZP_06268594.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella bivia JCVIHMP010]
 gi|282587717|gb|EFB92917.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella bivia JCVIHMP010]
          Length = 144

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 49/119 (41%), Gaps = 36/119 (30%)

Query: 6   FDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            D R+    LR +R W          V  L+VKD ++I  G   Y G P           
Sbjct: 8   LDYRY----LRMARIWAENSYCKRRQVGALVVKDKMIISDG---YNGTPSGFENVCEDDN 60

Query: 54  --------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                   HAE  A   L  +G  + G+T YVT  PC        CA+ II+ GI+R+V
Sbjct: 61  NITKPYVLHAEANAITKLARSGNNSEGSTLYVTASPCIE------CAKLIIQAGIKRLV 113


>gi|262402782|ref|ZP_06079343.1| tRNA-specific adenosine-34 deaminase [Vibrio sp. RC586]
 gi|262351564|gb|EEZ00697.1| tRNA-specific adenosine-34 deaminase [Vibrio sp. RC586]
          Length = 170

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 29/168 (17%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59
           S+ D +FM  A+  +     L      V  ++V++G +I  G    +T      HAE++ 
Sbjct: 7   STQDEQFMRRAIELAAQAEALGEV--PVGAVLVQEGKIIAEGWNCSITHQDATAHAEIEV 64

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           + EAG+          T YVTLEPC      P CA  ++   ++R+V     PD++    
Sbjct: 65  IREAGKVLSNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGA--PDLKAGAA 116

Query: 115 GL-------QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
           G        Q       +   ++E E +  L A+  R   +R  I  K
Sbjct: 117 GTVMDLFNSQASYHYATVEKGLLEEECRTQLQAFFQR---RRKEIKAK 161


>gi|224023823|ref|ZP_03642189.1| hypothetical protein BACCOPRO_00539 [Bacteroides coprophilus DSM
           18228]
 gi|224017045|gb|EEF75057.1| hypothetical protein BACCOPRO_00539 [Bacteroides coprophilus DSM
           18228]
          Length = 146

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 48/118 (40%), Gaps = 34/118 (28%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
            D R+M  A+    W          V  LIVK+ ++I  G   Y G P            
Sbjct: 12  LDKRYMRMAMI---WAENSYCNRRKVGALIVKNKMIISDG---YNGTPAGFENVCEDEHG 65

Query: 54  -------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                  HAE  A+ +   +   + GAT YVT  PC        CA+ II+ GI+RVV
Sbjct: 66  ITIPYVLHAEANAITKIARSNNSSEGATLYVTASPCIE------CAKLIIQAGIKRVV 117


>gi|298488260|ref|ZP_07006293.1| tRNA-specific adenosine-34 deaminase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157199|gb|EFH98286.1| tRNA-specific adenosine-34 deaminase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 169

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 15/100 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           V  ++V++G +IGRG    ++A     HAE+ A+ +A          G+T YVTLEPCS 
Sbjct: 34  VGAVVVQNGEIIGRGYNCPISASDPSAHAEMVAIRDAARALDNYRLSGSTLYVTLEPCSM 93

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                 CA  I+   + RVV    +P   +     Q+ SQ
Sbjct: 94  ------CAGLIVHSRVARVVYGALEPKAGIVQSQGQFFSQ 127


>gi|225010991|ref|ZP_03701457.1| CMP/dCMP deaminase zinc-binding [Flavobacteria bacterium MS024-3C]
 gi|225004898|gb|EEG42854.1| CMP/dCMP deaminase zinc-binding [Flavobacteria bacterium MS024-3C]
          Length = 146

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 36/152 (23%)

Query: 1   MPVSSFDARFMSAALRFS-RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------ 53
           M       ++  A LR +  W          V  ++VKD ++I  G   Y G P      
Sbjct: 1   MTTEDKQEKYDQAYLRMAAEWGKLSYCKRKQVGAIVVKDRMIISDG---YNGTPSGFENF 57

Query: 54  -------------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                        HAE  AL +   + + + GAT Y+TL PC        C++ I + GI
Sbjct: 58  CEDETGYTKWYVLHAEANALSKVAASTQSSEGATLYITLSPC------KECSKLIHQSGI 111

Query: 98  RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           +RVV      D      G+ +L++ G+ +  M
Sbjct: 112 KRVVYAKAYRD----SSGIDFLAKAGVAISHM 139


>gi|66044515|ref|YP_234356.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae pv. syringae B728a]
 gi|63255222|gb|AAY36318.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae pv. syringae B728a]
          Length = 169

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 41/129 (31%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP--------HAEVQALEEAGE-----EARGATAYVTLE 77
           V  ++V++G +IGRG      CP        HAE+ A+ +A +        G+T YVTLE
Sbjct: 34  VGAVVVQNGEIIGRGYN----CPISGSDPSAHAEMVAIRDAAKALDNYRLPGSTLYVTLE 89

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
           PCS       CA  I+   + RVV    +P             + GI+     +S+G+ F
Sbjct: 90  PCSM------CAGLIVHSRVARVVYGALEP-------------KAGIV-----QSQGQFF 125

Query: 138 LHAYLTRQV 146
             A+L  +V
Sbjct: 126 SQAFLNHRV 134


>gi|85712706|ref|ZP_01043751.1| Cytosine/adenosine deaminase putative [Idiomarina baltica OS145]
 gi|85693438|gb|EAQ31391.1| Cytosine/adenosine deaminase putative [Idiomarina baltica OS145]
          Length = 179

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 17/126 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
           + D  +M  AL  +  H         V  ++V + +++G G    +T      HAE QA+
Sbjct: 16  TTDEIYMQRALELA--HKAADEDEVPVGAVLVLNDMIVGEGYNQVITLSDPSAHAEAQAI 73

Query: 61  EEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             AG+         +T YVTLEPC+       CA  I    ++R+V    DP    +G  
Sbjct: 74  RAAGKNVDNYRLTDSTLYVTLEPCAM------CAGLITHARVKRLVFGAPDPRTGATGTA 127

Query: 116 LQWLSQ 121
           ++ L+ 
Sbjct: 128 IEVLNH 133


>gi|166712352|ref|ZP_02243559.1| hypothetical protein Xoryp_13070 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 170

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 15/121 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57
           P ++ D  +M  AL  +          P  A ++  +G V+G G    + ++    HAE+
Sbjct: 11  PHAAIDVHWMQHALHLAECAERDHDEIPVGALILGAEGNVLGEGWNFNIASHDPSAHAEI 70

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+ +AG         G T YVTLEPC+       CA  +I   I RVV    DP     
Sbjct: 71  VAMRDAGRRLSNHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGAC 124

Query: 113 G 113
           G
Sbjct: 125 G 125


>gi|29349668|ref|NP_813171.1| deoxycytidylate deaminase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253569961|ref|ZP_04847370.1| deoxycytidylate deaminase [Bacteroides sp. 1_1_6]
 gi|298383932|ref|ZP_06993493.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
           1_1_14]
 gi|29341578|gb|AAO79365.1| deoxycytidylate deaminase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251840342|gb|EES68424.1| deoxycytidylate deaminase [Bacteroides sp. 1_1_6]
 gi|298263536|gb|EFI06399.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
           1_1_14]
          Length = 149

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 48/118 (40%), Gaps = 34/118 (28%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
            D R++  A   S W          V  LIVKD ++I  G   Y G P            
Sbjct: 10  LDKRYIRMA---SIWAENSYCQRRKVGALIVKDKMIISDG---YNGTPSGFENVCEDENN 63

Query: 54  -------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                  HAE  A+ +   +   + GAT YVT  PC        CA+ II+ GI+RVV
Sbjct: 64  LTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CAKLIIQAGIKRVV 115


>gi|107103282|ref|ZP_01367200.1| hypothetical protein PaerPA_01004351 [Pseudomonas aeruginosa PACS2]
          Length = 182

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 33/125 (26%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           V  ++V++G +IGRG    ++++    HAE+ A+  A  EA      G+T YVTLEPCS 
Sbjct: 50  VGAVLVREGEIIGRGFNRPISSHDPSAHAEMLAIRMAAAEAGNYRLPGSTLYVTLEPCSM 109

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
                 C+  ++   I+R+V    +P    SG                +ES G+ F   +
Sbjct: 110 ------CSGLLVHARIQRLVYGTVEPK---SG---------------AVESRGRFFEQEH 145

Query: 142 LTRQV 146
           L  +V
Sbjct: 146 LNHRV 150


>gi|186686613|ref|YP_001869809.1| CMP/dCMP deaminase, zinc-binding [Nostoc punctiforme PCC 73102]
 gi|186469065|gb|ACC84866.1| CMP/dCMP deaminase, zinc-binding [Nostoc punctiforme PCC 73102]
          Length = 143

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 14/100 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP--HAEVQALEEAG 64
            FM AA++ ++   G       +  ++VKDG ++GRG       G P  HAE+  L  AG
Sbjct: 3   EFMEAAIQEAKQ--GREEGGIPIGSVLVKDGKILGRGHNKRVQDGDPVTHAEIDCLRNAG 60

Query: 65  E--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                RG T Y TL PC        CA  +++ GI++V+V
Sbjct: 61  RVGSYRGTTLYSTLMPCY------LCAGAVVQFGIKKVIV 94


>gi|19075322|ref|NP_587822.1| CMP/dCMP deaminase family [Schizosaccharomyces pombe 972h-]
 gi|74627116|sp|P87241|RIB2_SCHPO RecName: Full=Diaminohydroxyphosphoribosylamino-pyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase
 gi|2213559|emb|CAB09771.1| CMP/dCMP deaminase family [Schizosaccharomyces pombe]
          Length = 405

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 7/103 (6%)

Query: 31  VACLIVKDGIVIGRGVT-AYGGCPHAEVQALEE-----AGEEARGATAYVTLEPCS-HYG 83
           V  +IV++G ++  G +    G  HAE  A+E+       +   GA  Y T+EPCS    
Sbjct: 281 VGAVIVQNGKIVSTGYSRERPGNTHAEECAIEKFMLKNPTDSLEGAIMYSTMEPCSKRLS 340

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           +   C   I++     VV+   +PD+ V   G+  L + GI+V
Sbjct: 341 KKVSCTDLIVKQKFSTVVLGSLEPDIFVKCEGVDLLKKAGIVV 383


>gi|332305596|ref|YP_004433447.1| CMP/dCMP deaminase zinc-binding protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172925|gb|AEE22179.1| CMP/dCMP deaminase zinc-binding protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 162

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           V  ++VKD  VIG G    +       HAE+QA+ +AGE  +     G T YVTLEPC+ 
Sbjct: 28  VGAVLVKDQQVIGEGWNQSIMLNDPSAHAEMQAIRQAGEFIQNYRLIGTTLYVTLEPCT- 86

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 CA  ++   I R+V    D     +G
Sbjct: 87  -----MCAGLLVHSRIERLVFGAHDAKTGAAG 113


>gi|237715563|ref|ZP_04546044.1| deoxycytidylate deaminase [Bacteroides sp. D1]
 gi|262408572|ref|ZP_06085118.1| ComE operon protein 2 [Bacteroides sp. 2_1_22]
 gi|294647040|ref|ZP_06724653.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides ovatus SD CC 2a]
 gi|294809884|ref|ZP_06768560.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229444272|gb|EEO50063.1| deoxycytidylate deaminase [Bacteroides sp. D1]
 gi|262353437|gb|EEZ02531.1| ComE operon protein 2 [Bacteroides sp. 2_1_22]
 gi|292637617|gb|EFF56022.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides ovatus SD CC 2a]
 gi|294442913|gb|EFG11704.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides xylanisolvens SD CC 1b]
 gi|295086823|emb|CBK68346.1| Deoxycytidylate deaminase [Bacteroides xylanisolvens XB1A]
          Length = 149

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 48/118 (40%), Gaps = 34/118 (28%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
            D R++  A   S W          V  LIVKD ++I  G   Y G P            
Sbjct: 10  LDKRYIRMA---SIWAENSYCQRRKVGALIVKDKMIISDG---YNGTPSGFENVCEDENN 63

Query: 54  -------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                  HAE  A+ +   +   + GAT YVT  PC        CA+ II+ GI+RVV
Sbjct: 64  LTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CAKLIIQAGIKRVV 115


>gi|298373394|ref|ZP_06983383.1| cytidine/deoxycytidylate deaminase family protein [Bacteroidetes
           oral taxon 274 str. F0058]
 gi|298274446|gb|EFI15998.1| cytidine/deoxycytidylate deaminase family protein [Bacteroidetes
           oral taxon 274 str. F0058]
          Length = 141

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 49/119 (41%), Gaps = 36/119 (30%)

Query: 6   FDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            D R+M    R +R W          V  L+VKD ++I  G   Y G P           
Sbjct: 10  LDERYM----RMARIWAENSYCLRRKVGALLVKDKMIISDG---YNGTPSGFENCCEDEH 62

Query: 54  --------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                   HAE  A+ +   +   + GAT YVT  PC        CA+ II+ GIRRVV
Sbjct: 63  NNSKPYVLHAEANAISKVARSNNSSDGATLYVTASPCME------CAKLIIQAGIRRVV 115


>gi|291515202|emb|CBK64412.1| Deoxycytidylate deaminase [Alistipes shahii WAL 8301]
          Length = 145

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 57/142 (40%), Gaps = 38/142 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
             D R++  A   S W          V  LIVKD ++I  G   Y G P           
Sbjct: 10  QLDMRYLRMA---SIWAENSYCVRRKVGALIVKDKMIISDG---YNGTPSGFENVCEDDE 63

Query: 54  --------HAEVQALEEAGEEAR---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  A+ +  + A    G+T Y+T  PC        C++ II+ GIRRVV 
Sbjct: 64  GHTKPYVLHAEANAITKVAKSANNCDGSTLYITAAPCIE------CSKLIIQAGIRRVVY 117

Query: 103 CVDDPDVRVSGRGLQWLSQKGI 124
                D R S  GL  L + GI
Sbjct: 118 ---SEDYR-SEEGLNLLRRVGI 135


>gi|251781204|ref|ZP_04824120.1| tRNA-specific adenosine deaminase [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243081651|gb|EES47712.1| tRNA-specific adenosine deaminase [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 152

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 21/111 (18%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           +  +IVKD IVI +      T      HAE+ A+ EA    E+ R  G   YVTLEPC+ 
Sbjct: 22  IGAVIVKDNIVISKAHNLKETLKDATAHAEILAIREASKFLEDWRLNGTEMYVTLEPCTM 81

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
                 C   II+  I ++ +   + D+   G      S   +I DRM+ES
Sbjct: 82  ------CTSAIIQSRISKLHIGTFNKDMGACG------SIINLIDDRMLES 120


>gi|298481407|ref|ZP_06999599.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
           D22]
 gi|298272271|gb|EFI13840.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
           D22]
          Length = 149

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 48/118 (40%), Gaps = 34/118 (28%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
            D R++  A   S W          V  LIVKD ++I  G   Y G P            
Sbjct: 10  LDKRYIRMA---SIWAENSYCQRRKVGALIVKDKMIISDG---YNGTPSGFENVCEDENN 63

Query: 54  -------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                  HAE  A+ +   +   + GAT YVT  PC        CA+ II+ GI+RVV
Sbjct: 64  LTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CAKLIIQAGIKRVV 115


>gi|15598962|ref|NP_252456.1| hypothetical protein PA3767 [Pseudomonas aeruginosa PAO1]
 gi|116051766|ref|YP_789395.1| hypothetical protein PA14_15680 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218889954|ref|YP_002438818.1| putative Cytosine/adenosine deaminase [Pseudomonas aeruginosa
           LESB58]
 gi|254236673|ref|ZP_04929996.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254242457|ref|ZP_04935779.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|296387724|ref|ZP_06877199.1| putative Cytosine/adenosine deaminase [Pseudomonas aeruginosa PAb1]
 gi|313109181|ref|ZP_07795150.1| putative Cytosine/adenosine deaminase [Pseudomonas aeruginosa
           39016]
 gi|9949937|gb|AAG07154.1|AE004795_6 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|115586987|gb|ABJ13002.1| putative Cytosine/adenosine deaminase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126168604|gb|EAZ54115.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126195835|gb|EAZ59898.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218770177|emb|CAW25939.1| putative Cytosine/adenosine deaminase [Pseudomonas aeruginosa
           LESB58]
 gi|310881652|gb|EFQ40246.1| putative Cytosine/adenosine deaminase [Pseudomonas aeruginosa
           39016]
          Length = 182

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 33/125 (26%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           V  ++V++G +IGRG    ++++    HAE+ A+  A  EA      G+T YVTLEPCS 
Sbjct: 50  VGAVLVREGEIIGRGFNRPISSHDPSAHAEMLAIRMAAAEAGNYRLPGSTLYVTLEPCSM 109

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
                 C+  ++   I+R+V    +P    SG                +ES G+ F   +
Sbjct: 110 ------CSGLLVHARIQRLVYGTVEPK---SG---------------AVESRGRFFEQEH 145

Query: 142 LTRQV 146
           L  +V
Sbjct: 146 LNHRV 150


>gi|253998683|ref|YP_003050746.1| CMP/dCMP deaminase zinc-binding [Methylovorus sp. SIP3-4]
 gi|253985362|gb|ACT50219.1| CMP/dCMP deaminase zinc-binding [Methylovorus sp. SIP3-4]
          Length = 175

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 15/100 (15%)

Query: 31  VACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           V  L+V DG +IGRG+ A    +    HAE+QA+ EA          G T YVTLEPC+ 
Sbjct: 38  VGALVVLDGKIIGRGMNAPIGSHDPTAHAEIQAMREAAAAIGNYRLVGCTLYVTLEPCAM 97

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                 C+  I    I R+V    DP     G  +  +++
Sbjct: 98  ------CSGAIQHARIARLVYGARDPKTGSCGSVIDLMAE 131


>gi|227499915|ref|ZP_03930008.1| nucleoside deaminase [Anaerococcus tetradius ATCC 35098]
 gi|227218024|gb|EEI83297.1| nucleoside deaminase [Anaerococcus tetradius ATCC 35098]
          Length = 169

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 50/114 (43%), Gaps = 17/114 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57
             S  D  FM  A+  +R    +      V  +IV DG +IGRG            HAE+
Sbjct: 11  KFSEEDYFFMGEAINEARLARFIEEV--PVGAVIVLDGKIIGRGHNYTFKGKSALKHAEI 68

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
            A++EA           AT YVT+EPCS       CA  II   I R+V+ + D
Sbjct: 69  MAIKEASAYIDDFRLERATMYVTMEPCS------MCAGAIINSRIDRLVIGIRD 116


>gi|330950762|gb|EGH51022.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae Cit 7]
          Length = 167

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 41/129 (31%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP--------HAEVQALEEAGE-----EARGATAYVTLE 77
           V  ++V++G +IGRG      CP        HAE+ A+ +A +        G+T YVTLE
Sbjct: 34  VGAVLVQNGEIIGRGYN----CPISGSDPSAHAEMVAIRDAAKTLDNYRLPGSTLYVTLE 89

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
           PCS       CA  I+   + RVV    +P             + GI+     +S+G+ F
Sbjct: 90  PCSM------CAGLIVHSRVARVVYGALEP-------------KAGIV-----QSQGQFF 125

Query: 138 LHAYLTRQV 146
             A+L  +V
Sbjct: 126 SQAFLNHRV 134


>gi|81427949|ref|YP_394948.1| putative cytidine deaminase [Lactobacillus sakei subsp. sakei 23K]
 gi|78609590|emb|CAI54636.1| Putative cytidine deaminase [Lactobacillus sakei subsp. sakei 23K]
          Length = 172

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 53/126 (42%), Gaps = 20/126 (15%)

Query: 31  VACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCSH 81
           +  +IVKDG +IGRG      A     HAE+ A++EA              +VTLEPC  
Sbjct: 30  IGAVIVKDGQIIGRGHNIREHAQDATLHAEIIAIQEACMVEKSWRLEDTAIFVTLEPC-- 87

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136
               P CA  II   I  V     DP   V+G  +  L+ K       +V  + E+E   
Sbjct: 88  ----PMCAGAIINSRIPNVYFGASDPKAGVTGTLMNLLTDKRFNHQATVVAGVREAECAA 143

Query: 137 FLHAYL 142
            L  + 
Sbjct: 144 LLQTFF 149


>gi|49081784|gb|AAT50292.1| PA3767 [synthetic construct]
          Length = 183

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 33/125 (26%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           V  ++V++G +IGRG    ++++    HAE+ A+  A  EA      G+T YVTLEPCS 
Sbjct: 50  VGAVLVREGEIIGRGFNRPISSHDPSAHAEMLAIRMAAAEAGNYRLPGSTLYVTLEPCSM 109

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
                 C+  ++   I+R+V    +P    SG                +ES G+ F   +
Sbjct: 110 ------CSGLLVHARIQRLVYGTVEPK---SG---------------AVESRGRFFEQEH 145

Query: 142 LTRQV 146
           L  +V
Sbjct: 146 LNHRV 150


>gi|270294283|ref|ZP_06200485.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275750|gb|EFA21610.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 152

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 49/119 (41%), Gaps = 34/119 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           + D R++  A   S W          V  LIVKD ++I  G   Y G P           
Sbjct: 11  ALDRRYIRMA---SIWAENSYCQRRQVGALIVKDKMIISDG---YNGTPSGFENVCEDEN 64

Query: 54  --------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                   HAE  A+ +   +   + GAT YVT  PC        C++ II+ GI+RVV
Sbjct: 65  NVTKPYVLHAEANAITKIARSNNSSNGATMYVTASPCIE------CSKLIIQAGIKRVV 117


>gi|30248454|ref|NP_840524.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Nitrosomonas europaea ATCC 19718]
 gi|30138340|emb|CAD84348.1| Cytidine and deoxycytidylate deaminase zinc-binding region
           [Nitrosomonas europaea ATCC 19718]
          Length = 167

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 17/122 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           +PV + D  FM  AL  +R  V   +    V  ++V++  ++G G    VT      HAE
Sbjct: 8   VPVQTEDEYFMRQALDLAR--VAGAAGEVPVGAVMVRESRIVGCGHNCPVTTVDPTAHAE 65

Query: 57  VQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           ++AL +A          G T YVTLEPC        C   +    I R+V   +DP   V
Sbjct: 66  IRALRDAASRVGNYRLPGCTLYVTLEPCVM------CIGAMFHARITRLVYAANDPKTGV 119

Query: 112 SG 113
            G
Sbjct: 120 CG 121


>gi|160890970|ref|ZP_02071973.1| hypothetical protein BACUNI_03415 [Bacteroides uniformis ATCC 8492]
 gi|317481497|ref|ZP_07940562.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides sp. 4_1_36]
 gi|156859191|gb|EDO52622.1| hypothetical protein BACUNI_03415 [Bacteroides uniformis ATCC 8492]
 gi|316902343|gb|EFV24232.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides sp. 4_1_36]
          Length = 153

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 49/119 (41%), Gaps = 34/119 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           + D R++  A   S W          V  LIVKD ++I  G   Y G P           
Sbjct: 12  ALDRRYIRMA---SIWAENSYCQRRQVGALIVKDKMIISDG---YNGTPSGFENVCEDEN 65

Query: 54  --------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                   HAE  A+ +   +   + GAT YVT  PC        C++ II+ GI+RVV
Sbjct: 66  NVTKPYVLHAEANAITKIARSNNSSNGATMYVTASPCIE------CSKLIIQAGIKRVV 118


>gi|146416095|ref|XP_001484017.1| hypothetical protein PGUG_03398 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 611

 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 10/124 (8%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEE------ 62
           FM  AL  +    G T T  +V  ++V +G V+  G +    G  HAE  ALE+      
Sbjct: 459 FMELALSEAE-KCGETQTQFNVGAVLVHEGEVLATGHSRELPGNTHAEQCALEKYFKASN 517

Query: 63  AGEEARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS-GRGLQWLS 120
           + E   G   Y T+EPCS     + PC Q I++  I+   V V +PD  V     L+ LS
Sbjct: 518 STEVPEGTVIYTTMEPCSFRLSGNEPCVQRILKTCIKTCFVGVIEPDTFVKDNSSLRQLS 577

Query: 121 QKGI 124
             G+
Sbjct: 578 DNGV 581


>gi|295402713|ref|ZP_06812655.1| CMP/dCMP deaminase zinc-binding [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312109168|ref|YP_003987484.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. Y4.1MC1]
 gi|294975244|gb|EFG50880.1| CMP/dCMP deaminase zinc-binding [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311214269|gb|ADP72873.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. Y4.1MC1]
          Length = 161

 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 20/136 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  +IV+ G VI R      TA     HAE+ A++EA ++A       AT YVTLEPC+ 
Sbjct: 26  IGAIIVQGGNVIARAHNLRETAQRAIAHAEILAIDEACKKAGSWRLEDATLYVTLEPCAM 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGKI 136
                 CA  I+   I+RVV    DP    +G  +  L +     +  ++  +++ E   
Sbjct: 86  ------CAGAIVLARIKRVVFGASDPKGGCAGTLMNLLQEGRFNHQAEVIGGVLQEECGQ 139

Query: 137 FLHAYLTRQVEKRSHI 152
            L  +  +  EK+ +I
Sbjct: 140 MLSNFFRKLREKKKNI 155


>gi|325264602|ref|ZP_08131332.1| cytidine/deoxycytidylate deaminase family protein [Clostridium sp.
           D5]
 gi|324030264|gb|EGB91549.1| cytidine/deoxycytidylate deaminase family protein [Clostridium sp.
           D5]
          Length = 159

 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 17/125 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
           D ++M  A+R ++    L      + C+IV    +IGRG            HAE+ A+  
Sbjct: 4   DEKYMKEAIRQAKKAYALEEV--PIGCVIVYQDKIIGRGYNRRTIDKNPLAHAELTAIRR 61

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++         T YVTLEPC        C+  II+  ++RVVV   +P    +G  L 
Sbjct: 62  ASKKLNDWRLEECTLYVTLEPCQM------CSGAIIQARVQRVVVGCMNPKAGCAGSILN 115

Query: 118 WLSQK 122
            L  K
Sbjct: 116 LLEMK 120


>gi|256820204|ref|YP_003141483.1| CMP/dCMP deaminase zinc-binding [Capnocytophaga ochracea DSM 7271]
 gi|256581787|gb|ACU92922.1| CMP/dCMP deaminase zinc-binding [Capnocytophaga ochracea DSM 7271]
          Length = 146

 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 38/143 (26%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
           +D  +M  A+ +++      S    V  +IVKD ++I  G   Y G P            
Sbjct: 12  YDKAYMCMAMEWAKLSY---SQRKQVGAIIVKDRMIISDG---YNGTPTGFDNCCEDEEG 65

Query: 54  -------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A+     + + + GAT Y+T+ PC        C++ I + GI+RVV  
Sbjct: 66  NTHWYVLHAEANAIMKVASSTQSSEGATLYITMSPC------KECSKLIYQSGIKRVVYK 119

Query: 104 VDDPDVRVSGRGLQWLSQKGIIV 126
               D      GL +L + G+ V
Sbjct: 120 EGYRD----NEGLAFLEKAGVEV 138


>gi|258648600|ref|ZP_05736069.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
           tannerae ATCC 51259]
 gi|260851385|gb|EEX71254.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
           tannerae ATCC 51259]
          Length = 145

 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 36/119 (30%)

Query: 6   FDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            D R+    LR +R W          V  LIVKD ++I  G   Y G P           
Sbjct: 10  LDNRY----LRMARIWSENSYCKRRQVGALIVKDKMIISDG---YNGTPSGFENQCEDEL 62

Query: 54  --------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                   HAE  A+ +   +G  + GAT YVT  PC        C++ II+ GI+RV+
Sbjct: 63  NITKPYVLHAEANAITKIARSGNNSDGATLYVTDAPCIE------CSKLIIQAGIKRVI 115


>gi|150005156|ref|YP_001299900.1| deoxycytidylate deaminase [Bacteroides vulgatus ATCC 8482]
 gi|212694623|ref|ZP_03302751.1| hypothetical protein BACDOR_04153 [Bacteroides dorei DSM 17855]
 gi|237711112|ref|ZP_04541593.1| deoxycytidylate deaminase [Bacteroides sp. 9_1_42FAA]
 gi|237727465|ref|ZP_04557946.1| deoxycytidylate deaminase [Bacteroides sp. D4]
 gi|254883290|ref|ZP_05256000.1| deoxycytidylate deaminase [Bacteroides sp. 4_3_47FAA]
 gi|265750698|ref|ZP_06086761.1| deoxycytidylate deaminase [Bacteroides sp. 3_1_33FAA]
 gi|294777766|ref|ZP_06743212.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides vulgatus PC510]
 gi|319642664|ref|ZP_07997310.1| deoxycytidylate deaminase [Bacteroides sp. 3_1_40A]
 gi|149933580|gb|ABR40278.1| deoxycytidylate deaminase [Bacteroides vulgatus ATCC 8482]
 gi|212663124|gb|EEB23698.1| hypothetical protein BACDOR_04153 [Bacteroides dorei DSM 17855]
 gi|229434321|gb|EEO44398.1| deoxycytidylate deaminase [Bacteroides dorei 5_1_36/D4]
 gi|229454956|gb|EEO60677.1| deoxycytidylate deaminase [Bacteroides sp. 9_1_42FAA]
 gi|254836083|gb|EET16392.1| deoxycytidylate deaminase [Bacteroides sp. 4_3_47FAA]
 gi|263237594|gb|EEZ23044.1| deoxycytidylate deaminase [Bacteroides sp. 3_1_33FAA]
 gi|294448354|gb|EFG16908.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides vulgatus PC510]
 gi|317385752|gb|EFV66685.1| deoxycytidylate deaminase [Bacteroides sp. 3_1_40A]
          Length = 144

 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 48/118 (40%), Gaps = 34/118 (28%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
            D R++  A   S W          V  LIVKD ++I  G   Y G P            
Sbjct: 11  LDKRYIRMA---SIWAENSYCERRQVGALIVKDKMIISDG---YNGTPAGFENVCEDDNG 64

Query: 54  -------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                  HAE  A+ +   +   + GAT YVT  PC        CA+ II+ GI+RVV
Sbjct: 65  VTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CAKLIIQAGIKRVV 116


>gi|313668625|ref|YP_004048909.1| cytosine deaminase [Neisseria lactamica ST-640]
 gi|313006087|emb|CBN87548.1| putative cytosine deaminase (EC 3.5.4.1) [Neisseria lactamica
           020-06]
          Length = 239

 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 28/138 (20%)

Query: 2   PVSSFD-----ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52
           PV++F      A FM  AL  ++    L    P V  +IV DG +I    +A+  C    
Sbjct: 82  PVAAFPPQGEMAHFMGLALEQAKLS-ALMGEIP-VGAVIVSDGKIIA---SAHNTCIADC 136

Query: 53  ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
               HAE+ AL +AG + +     G   Y+TLEPC+       CA  +I+  ++RV+   
Sbjct: 137 NVSRHAEINALAQAGSKIQNYRLDGCDIYITLEPCAM------CASALIQARVKRVIYGA 190

Query: 105 DDPDVRVSGRGLQWLSQK 122
            +P    +G  +   + K
Sbjct: 191 GEPKTGAAGSIVNLFADK 208


>gi|329962142|ref|ZP_08300153.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides fluxus YIT 12057]
 gi|328530790|gb|EGF57648.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides fluxus YIT 12057]
          Length = 146

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 49/119 (41%), Gaps = 34/119 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           + D R++  A   S W          V  LIVKD ++I  G   Y G P           
Sbjct: 11  ALDKRYIRMA---SIWAENSYCIRRQVGALIVKDQMIISDG---YNGTPAGFENICEDEN 64

Query: 54  --------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                   HAE  A+ +   +   + GAT YVT  PC        CA+ II+ GI+RVV
Sbjct: 65  NVTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CAKLIIQAGIKRVV 117


>gi|237800069|ref|ZP_04588530.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|237806398|ref|ZP_04593102.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022924|gb|EGI02981.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331027511|gb|EGI07566.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 168

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 41/129 (31%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP--------HAEVQALEEAGE-----EARGATAYVTLE 77
           V  ++V +G +IGRG      CP        HAE+ A+ E+ +        G+T YVTLE
Sbjct: 34  VGAVVVHNGEIIGRGYN----CPISGSDPSAHAEMVAIRESAKALDNYRLPGSTLYVTLE 89

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
           PCS       CA  I+   + RVV    +P             + GI+     +S+G+ F
Sbjct: 90  PCSM------CAGLIVHSRVARVVYGALEP-------------KAGIV-----QSQGQFF 125

Query: 138 LHAYLTRQV 146
             A+L  +V
Sbjct: 126 SQAFLNHRV 134


>gi|163786644|ref|ZP_02181092.1| deoxycytidylate deaminase [Flavobacteriales bacterium ALC-1]
 gi|159878504|gb|EDP72560.1| deoxycytidylate deaminase [Flavobacteriales bacterium ALC-1]
          Length = 143

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 61/144 (42%), Gaps = 36/144 (25%)

Query: 9   RFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53
           R+  A LR ++ W          V  LIVKD ++I  G   Y G P              
Sbjct: 8   RYDKAYLRIAKEWGKLSHCKRKQVGALIVKDRMIISDG---YNGTPTGFENYCEDDEGYT 64

Query: 54  -----HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE  A+     + +  +GAT Y+TL PC        C++ I + GI RVV    
Sbjct: 65  KWYVLHAEANAILKVASSTQSCKGATLYITLSPCK------ECSKLIHQAGIIRVVYQNG 118

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRM 129
             D      GLQ+L++ GI ++ +
Sbjct: 119 YKD----DSGLQFLAKAGIELEHI 138


>gi|330985033|gb|EGH83136.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 169

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 15/100 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           V  ++V++G +IGRG    ++A     HAE+ A+ +A          G+T YVTLEPCS 
Sbjct: 34  VGAVVVQNGEIIGRGYNCPISASDPSAHAEMVAIRDAASALDNYRLPGSTLYVTLEPCSM 93

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                 CA  I+   + RVV    +P   +     Q+ SQ
Sbjct: 94  ------CAGLIVHSRVARVVYGALEPKAGIVQSQGQFFSQ 127


>gi|146302806|ref|YP_001190122.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Metallosphaera
           sedula DSM 5348]
 gi|145701056|gb|ABP94198.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Metallosphaera sedula DSM 5348]
          Length = 206

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 8/145 (5%)

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           K + H+LRAQ DA+++G  T   D+P LT  L      +P+R+I+     L    KI   
Sbjct: 32  KIRQHMLRAQVDAVMIGARTARVDNPRLT--LKYYTGKNPIRVIVTNSGDLDPGLKIFN- 88

Query: 240 ALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
            +    ++ T N  D +  L  +   +      C  +  L        V +++VEGG  +
Sbjct: 89  -IPPSTVVYTRNLSDSLKELTKKGVYVRTFSTLCDAMADLYKTF---SVRTVMVEGGGKL 144

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323
             S +    VD + +  S  V G G
Sbjct: 145 NWSLMKEGCVDEVRVTVSPRVFGSG 169


>gi|71736711|ref|YP_273597.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|289625949|ref|ZP_06458903.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289647891|ref|ZP_06479234.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|71557264|gb|AAZ36475.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|320323193|gb|EFW79282.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320329536|gb|EFW85525.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330867510|gb|EGH02219.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. aesculi str. 0893_23]
 gi|330874802|gb|EGH08951.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 169

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 15/100 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           V  ++V++G +IGRG    ++A     HAE+ A+ +A          G+T YVTLEPCS 
Sbjct: 34  VGAVVVQNGEIIGRGYNCPISASDPSAHAEMVAIRDAARALDNYRLPGSTLYVTLEPCSM 93

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                 CA  I+   + RVV    +P   +     Q+ SQ
Sbjct: 94  ------CAGLIVHSRVARVVYGALEPKAGIVQSQGQFFSQ 127


>gi|313157603|gb|EFR57018.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Alistipes sp. HGB5]
          Length = 145

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 61/151 (40%), Gaps = 41/151 (27%)

Query: 5   SFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53
             D R+    LR +R W          V  LIVKD ++I  G   Y G P          
Sbjct: 10  QLDIRY----LRMARIWAENSYCVRRKVGALIVKDKMIISDG---YNGTPSGFENICEDE 62

Query: 54  ---------HAEVQALEEAGEEAR---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                    HAE  A+ +  + A    G+T Y+T  PC        C++ II+ GI+RVV
Sbjct: 63  NGHTKPYVLHAEANAITKVAKSANNCDGSTLYITAAPC------IECSKLIIQAGIKRVV 116

Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMME 131
            C    +   S  GL  L + GI  V   ME
Sbjct: 117 YC----EEYRSEEGLNLLRKVGIECVQHAME 143


>gi|190574881|ref|YP_001972726.1| putative cytidine and deoxycytidylate deaminase [Stenotrophomonas
           maltophilia K279a]
 gi|190012803|emb|CAQ46432.1| putative cytidine and deoxycytidylate deaminase [Stenotrophomonas
           maltophilia K279a]
          Length = 174

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 15/122 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           +PV   D  +M  AL  +          P  A L+  DG ++G G    + ++    HAE
Sbjct: 7   VPVHDADEHWMRHALALAERAQREFDEIPVGAVLVGADGQLLGEGWNLNIASHDPSAHAE 66

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+   G+        G+T YVTLEPC+       CA  I+   + R+V    DP    
Sbjct: 67  IVAMRAGGKLLANHRLLGSTLYVTLEPCA------MCAMAIVHARVSRLVYGASDPKTGA 120

Query: 112 SG 113
            G
Sbjct: 121 CG 122


>gi|190347088|gb|EDK39300.2| hypothetical protein PGUG_03398 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 611

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 10/124 (8%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEE------ 62
           FM  AL  +    G T T  +V  ++V +G V+  G +    G  HAE  ALE+      
Sbjct: 459 FMELALSEAE-KCGETQTQFNVGAVLVHEGEVLATGHSRELPGNTHAEQCALEKYFKASN 517

Query: 63  AGEEARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS-GRGLQWLS 120
           + E   G   Y T+EPCS     + PC Q I++  I+   V V +PD  V     L+ LS
Sbjct: 518 STEVPEGTVIYTTMEPCSFRLSGNEPCVQRILKTCIKTCFVGVIEPDTFVKDNSSLRQLS 577

Query: 121 QKGI 124
             G+
Sbjct: 578 DNGV 581


>gi|167753214|ref|ZP_02425341.1| hypothetical protein ALIPUT_01485 [Alistipes putredinis DSM 17216]
 gi|167659145|gb|EDS03275.1| hypothetical protein ALIPUT_01485 [Alistipes putredinis DSM 17216]
          Length = 144

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 57/143 (39%), Gaps = 40/143 (27%)

Query: 5   SFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53
             D R+    LR +R W          V  LIVKD ++I  G   Y G P          
Sbjct: 10  QLDMRY----LRMARIWAENSYCVRRKVGALIVKDKMIISDG---YNGTPAGFENICEDE 62

Query: 54  ---------HAEVQALEEAGEEAR---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                    HAE  A+ +  + A    G+T Y+T  PC        C++ II+ GIRRVV
Sbjct: 63  TGKTKSYVLHAEANAITKVAKSANNCDGSTLYITAAPC------IECSKLIIQAGIRRVV 116

Query: 102 VCVDDPDVRVSGRGLQWLSQKGI 124
                 D   S  GL  L + GI
Sbjct: 117 Y----SDDYRSEEGLDLLRRVGI 135


>gi|240143386|ref|ZP_04741987.1| putative deoxycytidylate deaminase [Roseburia intestinalis L1-82]
 gi|257204654|gb|EEV02939.1| putative deoxycytidylate deaminase [Roseburia intestinalis L1-82]
 gi|291537131|emb|CBL10243.1| Deoxycytidylate deaminase [Roseburia intestinalis M50/1]
 gi|291540369|emb|CBL13480.1| Deoxycytidylate deaminase [Roseburia intestinalis XB6B4]
          Length = 161

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 70/165 (42%), Gaps = 44/165 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAY-GGCP------- 53
           S+D  FM  A+       G+ S +P+    AC++ +D  ++  G   +  GC        
Sbjct: 10  SWDEYFMGVAVL-----SGMRSKDPNTQVGACIVSEDHKILSMGYNGFPTGCSDDEFPWE 64

Query: 54  --------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                         H+E+ A L   G    GAT YVTL PC+       CA+ II+ GIR
Sbjct: 65  REGEPLENKYFYTTHSELNAILNYRGGSLEGATIYVTLFPCNE------CAKAIIQSGIR 118

Query: 99  RVVVCVDD----PDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
           R+V   D     P V  S +    L+  G+++ R   +  +I L 
Sbjct: 119 RIVYDSDKYETTPAVVASKK---MLNAAGVVLQRYEHTNRRIELE 160


>gi|239616728|ref|YP_002940050.1| CMP/dCMP deaminase zinc-binding [Kosmotoga olearia TBF 19.5.1]
 gi|239505559|gb|ACR79046.1| CMP/dCMP deaminase zinc-binding [Kosmotoga olearia TBF 19.5.1]
          Length = 170

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 33/58 (56%), Gaps = 9/58 (15%)

Query: 54  HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE  AL +A   G    GAT YVT +PCS       CA+ II  GI+RVV  VD PD
Sbjct: 97  HAEQNALSQAAKFGISTDGATIYVTHKPCS------ICARLIINAGIKRVVYDVDYPD 148


>gi|330969043|gb|EGH69109.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 169

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 41/129 (31%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP--------HAEVQALEEAGE-----EARGATAYVTLE 77
           V  ++V++G ++GRG      CP        HAE+ A+ +A +        G+T YVTLE
Sbjct: 34  VGAVVVQNGEIVGRGYN----CPISGSDPSAHAEMVAIRDAAKALDNYRLPGSTLYVTLE 89

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
           PCS       CA  I+   + RVV    +P             + GI+     +S+G+ F
Sbjct: 90  PCSM------CAGLIVHSRVTRVVYGALEP-------------KAGIV-----QSQGQFF 125

Query: 138 LHAYLTRQV 146
             A+L  +V
Sbjct: 126 SQAFLNHRV 134


>gi|319901309|ref|YP_004161037.1| CMP/dCMP deaminase zinc-binding protein [Bacteroides helcogenes P
           36-108]
 gi|319416340|gb|ADV43451.1| CMP/dCMP deaminase zinc-binding protein [Bacteroides helcogenes P
           36-108]
          Length = 145

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 49/119 (41%), Gaps = 34/119 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           + D R++  A   S W          V  LIVKD ++I  G   Y G P           
Sbjct: 11  ALDKRYIRMA---SIWAENSYCKRRQVGALIVKDKMIISDG---YNGTPAGFENICEDEN 64

Query: 54  --------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                   HAE  A+ +   +   + GAT YVT  PC        C++ II+ GI+RVV
Sbjct: 65  NVTKPYVLHAEANAITKIARSNNSSNGATMYVTASPCIE------CSKLIIQAGIKRVV 117


>gi|298293557|ref|YP_003695496.1| CMP/dCMP deaminase zinc-binding protein [Starkeya novella DSM
          506]
 gi|296930068|gb|ADH90877.1| CMP/dCMP deaminase zinc-binding protein [Starkeya novella DSM
          506]
          Length = 158

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 10/79 (12%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65
          FM  A+  SR  +    + P   C+IVKDG+++G G    V  +    H EV+A+ +AG 
Sbjct: 7  FMRRAIEISREKMRSDGSAP-FGCVIVKDGVIVGEGVNNVVNNHDATSHGEVEAIRDAGR 65

Query: 66 EAR-----GATAYVTLEPC 79
            +     G   Y T EPC
Sbjct: 66 RLKSWDLSGCELYTTCEPC 84


>gi|145589597|ref|YP_001156194.1| CMP/dCMP deaminase, zinc-binding [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048003|gb|ABP34630.1| CMP/dCMP deaminase, zinc-binding protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 152

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 17/133 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI----GRGVTAYGGCPHAE 56
           M  +  D +FM  A+  ++    L    P V  ++V+DG VI     + ++ +    HAE
Sbjct: 1   MSQAELDQQFMQQAIEQAKL-AALAGEVP-VGAVVVRDGKVISSAFNKPISTHDPSAHAE 58

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL  A +        G T YVTLEPC        C+  ++   + RVV    DP    
Sbjct: 59  MLALRAAAQSEENYRLPGTTLYVTLEPCVM------CSGAMLHARLDRVVYGAADPKTGA 112

Query: 112 SGRGLQWLSQKGI 124
           +G      S K I
Sbjct: 113 AGSVFDVFSSKQI 125


>gi|330968078|gb|EGH68338.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 169

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 31/140 (22%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP--------HAEVQALEEAGE-----EARGATAYVTLE 77
           V  ++V++G +IGRG      CP        HAE+ A+ +A          G+T YVTLE
Sbjct: 34  VGAVVVQNGEIIGRGYN----CPISGSDPSAHAEMVAIRDAARALDNYRLPGSTLYVTLE 89

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM------- 130
           PCS       CA  I+   + RVV    +P   +     Q+ SQ G +  R++       
Sbjct: 90  PCSM------CAGLIVHSRVARVVYGALEPKAGIVQSQGQFFSQ-GFLNHRVLFEGGVLG 142

Query: 131 ESEGKIFLHAYLTRQVEKRS 150
           E  G +    +  R+ EK +
Sbjct: 143 EECGAMLSEFFRMRRAEKEA 162


>gi|227891209|ref|ZP_04009014.1| nucleoside deaminase [Lactobacillus salivarius ATCC 11741]
 gi|227867083|gb|EEJ74504.1| nucleoside deaminase [Lactobacillus salivarius ATCC 11741]
          Length = 169

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 50/121 (41%), Gaps = 17/121 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAG 64
           +FM  AL  ++    +      + C+IVKDG +IGRG      +     HAE+ A+EEA 
Sbjct: 13  KFMKEALFEAKLAAKIGEV--PIGCVIVKDGKIIGRGHNLREHSQNATLHAEMLAIEEAN 70

Query: 65  EEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           E            +VTLEPC      P C+  II   I  V     D      G  +  L
Sbjct: 71  ETVNSWRLVDTQLFVTLEPC------PMCSGAIINSRIPEVYYGASDSKAGTVGTLMNLL 124

Query: 120 S 120
            
Sbjct: 125 E 125


>gi|325268984|ref|ZP_08135605.1| cytidine/deoxycytidylate deaminase [Prevotella multiformis DSM
           16608]
 gi|324988605|gb|EGC20567.1| cytidine/deoxycytidylate deaminase [Prevotella multiformis DSM
           16608]
          Length = 175

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 51/121 (42%), Gaps = 36/121 (29%)

Query: 4   SSFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------- 53
           ++ D R+    LR +R W          V  L+VKD ++I  G   Y G P         
Sbjct: 23  TAVDYRY----LRMARIWAENSYCRRRQVGALVVKDKMIISDG---YNGTPSGFENVCED 75

Query: 54  ----------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                     HAE  A   L  +G  + G+T YVT  PC        C++ II+ GIRRV
Sbjct: 76  EAGVTKPYVLHAEANAITKLARSGNNSDGSTLYVTASPCIE------CSKLIIQAGIRRV 129

Query: 101 V 101
           V
Sbjct: 130 V 130


>gi|266621805|ref|ZP_06114740.1| tRNA-specific adenosine deaminase [Clostridium hathewayi DSM 13479]
 gi|288866494|gb|EFC98792.1| tRNA-specific adenosine deaminase [Clostridium hathewayi DSM 13479]
          Length = 165

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 17/127 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
           D ++M AA+  +R   G     P + C+IV +  +I RG            HAE+ A+++
Sbjct: 4   DEKYMRAAIGQAR-KAGAIGEVP-IGCVIVYEDKIIARGYNRRTIDKNVLSHAEIIAIKK 61

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++       G T YVTLEPC      P CA  I++  I +VV+   +P    +G  L 
Sbjct: 62  ACKKIGDWRLEGCTMYVTLEPC------PMCAGAIVQARIPKVVIGCMNPKAGCAGSVLD 115

Query: 118 WLSQKGI 124
            L + G 
Sbjct: 116 LLHEDGF 122


>gi|269123684|ref|YP_003306261.1| CMP/dCMP deaminase zinc-binding protein [Streptobacillus
           moniliformis DSM 12112]
 gi|268315010|gb|ACZ01384.1| CMP/dCMP deaminase zinc-binding protein [Streptobacillus
           moniliformis DSM 12112]
          Length = 159

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 61/147 (41%), Gaps = 40/147 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNP--SVACLIVKDGIVIGRGV---------------- 46
           S+D  FM  A   +       S +P   V   IVKD  ++G G                 
Sbjct: 8   SWDEYFMGIAFLSAN-----RSKDPVTQVGACIVKDSKIVGIGYNGFPIGSSDDEVPWEK 62

Query: 47  ------TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                 T Y    HAE+ A+  +  + +G+T YVT  PC+       CA+ II+ GI +V
Sbjct: 63  DGDFLNTKYAYVVHAELNAILNSNRDLKGSTIYVTHFPCNE------CAKSIIQTGISKV 116

Query: 101 VVCVD---DPDVRVSGRGLQWLSQKGI 124
           +   D   D D  ++ + +  LS  GI
Sbjct: 117 IFFSDKHKDKDSSIASKRM--LSNAGI 141


>gi|324992584|gb|EGC24505.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK405]
          Length = 156

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
          FM  AL+ +   + L      + C++VK+G +IGRG  A         HAE+ A+EEA  
Sbjct: 12 FMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEANR 69

Query: 66 EAR-----GATAYVTLEPC 79
                  G T +VT+EPC
Sbjct: 70 HENSWRLLGTTLFVTIEPC 88


>gi|220907233|ref|YP_002482544.1| CMP/dCMP deaminase [Cyanothece sp. PCC 7425]
 gi|219863844|gb|ACL44183.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 7425]
          Length = 144

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 14/99 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP--HAEVQALEEAG 64
           +FM AA+  +R   GL      +  ++VK+G +IGRG       G P  HAE+  L++AG
Sbjct: 3   QFMQAAIAEAR--TGLQEGGIPIGSVLVKNGEIIGRGHNQRVQQGNPIIHAEIDCLQQAG 60

Query: 65  EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
              R    T Y TL PC        CA  +++ GI++V+
Sbjct: 61  RIGRYQDTTLYSTLMPCY------LCAGAVVQFGIKKVI 93


>gi|221067789|ref|ZP_03543894.1| CMP/dCMP deaminase zinc-binding [Comamonas testosteroni KF-1]
 gi|220712812|gb|EED68180.1| CMP/dCMP deaminase zinc-binding [Comamonas testosteroni KF-1]
          Length = 463

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 17/119 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59
           +S    FM  AL  +R           V  ++VKDG VIGRG    ++A     HAEV A
Sbjct: 5   ASVHEHFMRQALEQAR--CAAACGEVPVGAVVVKDGQVIGRGHNSPLSAQDPTAHAEVLA 62

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           L EA          G T YVTLEPC+       C+  ++   +  VV    +P    +G
Sbjct: 63  LREAARTLGNYRLEGCTLYVTLEPCTM------CSGAMLHARVDAVVYGAAEPRTGAAG 115


>gi|330892455|gb|EGH25116.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. mori str. 301020]
 gi|330894515|gb|EGH27176.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 169

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 16/109 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           V  ++V++G +IGRG    ++A     HAE+ A+ +A          G+T YVTLEPCS 
Sbjct: 34  VGAVVVQNGEIIGRGYNCPISASDPSAHAEMVAVRDAARALDNYRLPGSTLYVTLEPCSM 93

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
                 CA  I+   + RVV    +P   +     Q+ SQ G +  R++
Sbjct: 94  ------CAGLIVHSRVARVVYGALEPKAGIVQSQGQFFSQ-GFLNHRVL 135


>gi|255732273|ref|XP_002551060.1| DRAP deaminase [Candida tropicalis MYA-3404]
 gi|240131346|gb|EER30906.1| DRAP deaminase [Candida tropicalis MYA-3404]
          Length = 590

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 60/127 (47%), Gaps = 12/127 (9%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEE----- 62
           +FM  A+  +    G T T  +V C++V +G VI  G +    G  HAE  ALE+     
Sbjct: 438 KFMEMAIEQAE-KCGETQTQFNVGCVLVNNGKVISTGHSRELPGNTHAEQCALEKYFAEH 496

Query: 63  --AGEEARGATAYVTLEPCS-HYGRSPPCAQFIIEC-GIRRVVVCVDDPDVRV-SGRGLQ 117
               E   G   + T+EPCS     + PC   I+E  GI+   V V +PD+ V +    Q
Sbjct: 497 DGVKEVPEGTEIFTTMEPCSLRLSGNLPCVDRILETKGIKTCFVGVLEPDIFVKNNSSYQ 556

Query: 118 WLSQKGI 124
            L + G+
Sbjct: 557 KLLKNGV 563


>gi|149369588|ref|ZP_01889440.1| putative deoxycytidylate deaminase [unidentified eubacterium SCB49]
 gi|149357015|gb|EDM45570.1| putative deoxycytidylate deaminase [unidentified eubacterium SCB49]
          Length = 142

 Score = 45.1 bits (105), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 36/151 (23%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTN-PSVACLIVKDGIVIGRGVTAYGGCP--------- 53
           +S   ++  A LR ++    L+  N   V  LIVK  ++I  G   Y G P         
Sbjct: 3   ASKQKKYDVAYLRMAKEWSKLSHCNRKQVGALIVKGNMIISDG---YNGTPTGFDNECED 59

Query: 54  ----------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                     HAE  A+     + +  +GAT Y+TL PC        C++ I + GI+RV
Sbjct: 60  CDNNTHWYVLHAEANAILKVASSTQSCQGATLYITLSPC------KDCSKLIHQSGIKRV 113

Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
           V      D      GL++L + G+ +  + E
Sbjct: 114 VYHKGYKD----DSGLKFLEKAGVSITHIEE 140


>gi|114330609|ref|YP_746831.1| CMP/dCMP deaminase, zinc-binding [Nitrosomonas eutropha C91]
 gi|114307623|gb|ABI58866.1| tRNA-adenosine deaminase [Nitrosomonas eutropha C91]
          Length = 167

 Score = 45.1 bits (105), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 17/122 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           +PV + D  FM  AL  +R  V   S    V  ++V++  + G G    VT      HAE
Sbjct: 8   VPVQAEDEYFMRQALDLAR--VAGDSGEVPVGAVVVRNSQIAGYGYNCPVTLMDPTAHAE 65

Query: 57  VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL +A  +         T YVTLEPC        C   +    I+R+V   +DP   V
Sbjct: 66  IMALRDAANKLGNYRLPECTLYVTLEPCVM------CIGSMFHARIKRLVYAAEDPKTGV 119

Query: 112 SG 113
            G
Sbjct: 120 CG 121


>gi|260592105|ref|ZP_05857563.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
           veroralis F0319]
 gi|260535983|gb|EEX18600.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
           veroralis F0319]
          Length = 144

 Score = 45.1 bits (105), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 49/121 (40%), Gaps = 36/121 (29%)

Query: 4   SSFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------- 53
           S  D R+    LR +R W          V  L+VKD ++I  G   Y G P         
Sbjct: 6   SLLDYRY----LRMARIWAENSYCRRRQVGALVVKDKMIISDG---YNGTPSGFENICED 58

Query: 54  ----------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                     HAE  A   L  +   + GAT YVT  PC        C++ II+ GIRRV
Sbjct: 59  ESGTTFPYVLHAEANAITKLARSSNNSDGATLYVTASPCIE------CSKLIIQAGIRRV 112

Query: 101 V 101
           V
Sbjct: 113 V 113


>gi|257487178|ref|ZP_05641219.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|331009206|gb|EGH89262.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 169

 Score = 45.1 bits (105), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 15/100 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           V  ++V++G +IGRG    ++A     HAE+ A+ +A          G+T YVTLEPCS 
Sbjct: 34  VGAVVVQNGEIIGRGYNCPISASDPSAHAEMVAVRDAARALDNYRLPGSTLYVTLEPCSM 93

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                 CA  I+   + RVV    +P   +     Q+ SQ
Sbjct: 94  ------CAGLIVHSRVARVVYGALEPKAGIVQSQGQFFSQ 127


>gi|332829184|gb|EGK01848.1| hypothetical protein HMPREF9455_01996 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 147

 Score = 45.1 bits (105), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 47/118 (39%), Gaps = 34/118 (28%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
            D R+M  A   + W          V  LIVKD ++I  G   Y G P            
Sbjct: 9   LDERYMRMA---AIWAENSYCVRRKVGALIVKDKMIISDG---YNGTPAGFENICEDENN 62

Query: 54  -------HAEVQALEEAG---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                  HAE  A+ +       + GAT YVT  PC        CA+ II+ GI+RVV
Sbjct: 63  ETKPYVLHAEANAITKVACSHNSSMGATMYVTTSPC------IECAKLIIQAGIKRVV 114


>gi|332285213|ref|YP_004417124.1| cytosine deaminase [Pusillimonas sp. T7-7]
 gi|330429166|gb|AEC20500.1| cytosine deaminase [Pusillimonas sp. T7-7]
          Length = 145

 Score = 45.1 bits (105), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 16/101 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEAGE 65
           FM AA++ +R  +GL      +  ++V  G +IGRG      C     H E+ ALE AG 
Sbjct: 4   FMKAAIQEAR--LGLQEGGIPIGSVLVHQGTIIGRGHNRRVQCGSTILHGEMDALENAGR 61

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           +     R +  Y TL PC      P C   I+  GI +VV+
Sbjct: 62  QPASVYRESVLYTTLSPC------PMCTGAILLYGIPKVVI 96


>gi|224006712|ref|XP_002292316.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220971958|gb|EED90291.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 777

 Score = 45.1 bits (105), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 26/118 (22%)

Query: 32  ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG--------------------EEARGAT 71
           A L+ KDG ++G+G + Y G  HA   A +EAG                    ++   +T
Sbjct: 212 AVLVAKDGRILGKGRSTYAG--HAVEFAFKEAGINATPLREWCVAWPSDSKFRKDISEST 269

Query: 72  AYVTLEPCSHYGR---SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            YVTLEP S+ G+    PP  Q +   GI R+V+   DP    +  G   L   G+ V
Sbjct: 270 LYVTLEP-SNEGQGEEKPPITQLVEMAGIPRLVIGCQDPVPENAAEGAGRLHAAGVSV 326


>gi|86140853|ref|ZP_01059412.1| putative deoxycytidylate deaminase [Leeuwenhoekiella blandensis
           MED217]
 gi|85832795|gb|EAQ51244.1| putative deoxycytidylate deaminase [Leeuwenhoekiella blandensis
           MED217]
          Length = 146

 Score = 45.1 bits (105), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 58/140 (41%), Gaps = 40/140 (28%)

Query: 13  AALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------------ 53
           A LR +R W          V  LIVKD ++I  G   Y G P                  
Sbjct: 15  AYLRMAREWAKLSYCQRKQVGALIVKDKMIISDG---YNGTPTGFENICEDEEGYTKWYV 71

Query: 54  -HAEVQALEEAGEEAR---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV--CVDDP 107
            HAE  A+ +     +   GAT Y+TL PC+       C++ I + GI+RVV      DP
Sbjct: 72  LHAEANAILKVAASTQSCVGATLYITLSPCTE------CSKLIHQAGIKRVVFNKAYKDP 125

Query: 108 DVRVSGRGLQWLSQKGIIVD 127
                  G+ +L + G+ VD
Sbjct: 126 S------GIDFLRRAGVSVD 139


>gi|254030277|gb|ACT53870.1| DRAP deaminase [Candida membranifaciens]
          Length = 357

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 10/125 (8%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEE----A 63
           ++M  A+  +    G T+T  +V  ++V DG ++G G T    G  HAE  ALE+     
Sbjct: 212 KYMELAIELAE-KCGETTTQFNVGAVLVYDGEILGTGHTRELEGNTHAEQCALEKYFTRT 270

Query: 64  GEE--ARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDP-DVRVSGRGLQWL 119
           GE     G   Y ++EPCS     + PC + I++  I    V V +P D       +Q L
Sbjct: 271 GERNVPYGTKIYTSMEPCSFRLSGNLPCVERILQTNITTCFVGVVEPGDFVKDNTSVQTL 330

Query: 120 SQKGI 124
             KG+
Sbjct: 331 ESKGV 335


>gi|260776578|ref|ZP_05885473.1| tRNA-specific adenosine-34 deaminase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607801|gb|EEX34066.1| tRNA-specific adenosine-34 deaminase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 169

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 21/140 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++VK G ++  G    +  +    HAE+Q L +AG   E  R    T YVTLEPC  
Sbjct: 32  VGAVLVKGGEIVAEGWNQSIGHHDATAHAEMQVLRKAGQVLENYRLLDTTLYVTLEPC-- 89

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P CA  ++   ++R+V    D     +G  L     +       I   +ME E + 
Sbjct: 90  ----PMCAGALLHSRVKRIVYGAPDLKAGAAGTVLNLFEHQAAYHYADIEQGLMEEECRG 145

Query: 137 FLHAYLT-RQVEKRSHITLK 155
            L A+   R+ EK++   +K
Sbjct: 146 QLQAFFKRRRKEKKAQKQMK 165


>gi|24374802|ref|NP_718845.1| cytidine/deoxycytidylate deaminase family protein [Shewanella
           oneidensis MR-1]
 gi|24349479|gb|AAN56289.1|AE015766_5 cytidine/deoxycytidylate deaminase family protein [Shewanella
           oneidensis MR-1]
          Length = 194

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 15/99 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++VKDG+ I  G    ++ +  C HAE+  L  AG+         AT YVTLEPC+ 
Sbjct: 56  VGAVLVKDGLQIATGYNLSISQHDPCAHAEILCLRAAGQTVENYRLLDATLYVTLEPCA- 114

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                 CA  ++   I RVV    D     +G  L  L 
Sbjct: 115 -----MCAGAMVHSRIARVVFGARDEKTGAAGTVLNLLQ 148


>gi|330959126|gb|EGH59386.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 169

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 41/129 (31%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP--------HAEVQALEEAGE-----EARGATAYVTLE 77
           V  ++V+ G +IGRG      CP        HAE+ A+ +A +        G+T YVTLE
Sbjct: 34  VGAVLVQHGEIIGRGYN----CPISGSDPSAHAEMMAIRDAAKALDNYRLPGSTLYVTLE 89

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
           PCS       CA  I+   + RVV    +P             + GI+     ES+G+ F
Sbjct: 90  PCSM------CAGLIVHSRVARVVYGALEP-------------KAGIV-----ESQGQFF 125

Query: 138 LHAYLTRQV 146
              +L  +V
Sbjct: 126 SQGFLNHRV 134


>gi|213961866|ref|ZP_03390132.1| cytidine/deoxycytidylate deaminase family protein [Capnocytophaga
           sputigena Capno]
 gi|213955655|gb|EEB66971.1| cytidine/deoxycytidylate deaminase family protein [Capnocytophaga
           sputigena Capno]
          Length = 146

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 38/141 (26%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
           +D  +M  A+ +++      S    V  ++VKD ++I  G   Y G P            
Sbjct: 12  YDKAYMRMAMEWAKLSY---SQRKQVGAIMVKDRMIISDG---YNGTPTGFDNCCEDEEG 65

Query: 54  -------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A+     + + + GAT Y+T+ PC        C++ I + GI+RVV  
Sbjct: 66  NTHWYVLHAEANAIMKVASSTQSSEGATLYITMSPC------KECSKLIYQSGIKRVVYK 119

Query: 104 VDDPDVRVSGRGLQWLSQKGI 124
               D      GL +L + G+
Sbjct: 120 EGYRD----NEGLAFLKKAGV 136


>gi|322386624|ref|ZP_08060249.1| tRNA-specific adenosine deaminase [Streptococcus cristatus ATCC
          51100]
 gi|321269297|gb|EFX52232.1| tRNA-specific adenosine deaminase [Streptococcus cristatus ATCC
          51100]
          Length = 166

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
          FM  AL+ +   + L +    + C++VK+G +IGRG  A         HAE+ A+EEA +
Sbjct: 22 FMREALKEA--EIALANDEIPIGCVLVKNGQIIGRGHNAREELQRAVMHAEIMAIEEANQ 79

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 80 HENSWRLLDTTLFVTIEPC 98


>gi|188588285|ref|YP_001922596.1| tRNA-specific adenosine deaminase [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498566|gb|ACD51702.1| tRNA-specific adenosine deaminase [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 157

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 21/111 (18%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           +  +IVKD IVI +      T      HAE+ A+ EA +        G   YVTLEPC+ 
Sbjct: 27  IGAVIVKDNIVISKAHNLKETLKDATAHAEILAIREASKFLDDWRLNGTEMYVTLEPCTM 86

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
                 C   II+  I ++ +   + D+   G      S   +I DRM+ES
Sbjct: 87  ------CTSAIIQSRISKLHIGTFNKDMGACG------SIINLIDDRMLES 125


>gi|146298293|ref|YP_001192884.1| CMP/dCMP deaminase, zinc-binding [Flavobacterium johnsoniae UW101]
 gi|146152711|gb|ABQ03565.1| CMP/dCMP deaminase, zinc-binding [Flavobacterium johnsoniae UW101]
          Length = 143

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 36/144 (25%)

Query: 9   RFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53
           ++  A LR ++ W +        V  +IVKD ++I  G   Y G P              
Sbjct: 8   KYDKAYLRIAKEWSLLSYCKRKQVGAIIVKDRMIISDG---YNGTPSGFENCCEDEDGLT 64

Query: 54  -----HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE  A+     + +   GAT Y+TL PC        C++ I + GI+RVV    
Sbjct: 65  RWDVLHAEANAILKVARSTQSCEGATLYITLSPCKE------CSKLIHQSGIKRVVY--- 115

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRM 129
             D      G+Q+L + G+ V+ +
Sbjct: 116 -KDGYRDDSGIQFLIKAGVEVEHI 138


>gi|160882011|ref|YP_001560979.1| CMP/dCMP deaminase zinc-binding [Clostridium phytofermentans ISDg]
 gi|160430677|gb|ABX44240.1| CMP/dCMP deaminase zinc-binding [Clostridium phytofermentans ISDg]
          Length = 161

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 17/121 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
           ++M AA+  ++    L    P + C+IV D  +I RG     T      HAE+ A+E+A 
Sbjct: 6   KYMKAAIVQAK-KAALIGEVP-IGCVIVYDNKIIARGYNKRNTKKTTLAHAEILAIEKAS 63

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                    G T YVTLEPC        C+  I++  + RVV+   +P    +G  L  L
Sbjct: 64  RYLNDWRLEGCTMYVTLEPCQM------CSGAIVQSRMDRVVIGSMNPKAGCAGSILNLL 117

Query: 120 S 120
            
Sbjct: 118 Q 118


>gi|281424156|ref|ZP_06255069.1| cytidine/deoxycytidylate deaminase family protein [Prevotella oris
           F0302]
 gi|281401717|gb|EFB32548.1| cytidine/deoxycytidylate deaminase family protein [Prevotella oris
           F0302]
          Length = 159

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 48/121 (39%), Gaps = 36/121 (29%)

Query: 4   SSFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------- 53
              D R+    LR +R W          V  L+VKD ++I  G   Y G P         
Sbjct: 17  QQLDNRY----LRMARIWAENSYCLRRQVGALVVKDKMIISDG---YNGTPSGFDNVCED 69

Query: 54  ----------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                     HAE  A   L  +   + G+T YVT  PC        CA+ II+ GIRRV
Sbjct: 70  ANQATFPYVLHAEANAITKLARSSNNSDGSTLYVTASPC------IECAKLIIQAGIRRV 123

Query: 101 V 101
           V
Sbjct: 124 V 124


>gi|182682990|ref|YP_001834737.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          pneumoniae CGSP14]
 gi|303255537|ref|ZP_07341594.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          pneumoniae BS455]
 gi|303260656|ref|ZP_07346619.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          pneumoniae SP-BS293]
 gi|303260820|ref|ZP_07346769.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          pneumoniae SP14-BS292]
 gi|303263147|ref|ZP_07349070.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          pneumoniae BS397]
 gi|303267493|ref|ZP_07353343.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          pneumoniae BS457]
 gi|303269460|ref|ZP_07355227.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          pneumoniae BS458]
 gi|182628324|gb|ACB89272.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          pneumoniae CGSP14]
 gi|301800992|emb|CBW33654.1| putative deaminase [Streptococcus pneumoniae INV200]
 gi|302597498|gb|EFL64587.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          pneumoniae BS455]
 gi|302637657|gb|EFL68143.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          pneumoniae SP14-BS292]
 gi|302638186|gb|EFL68658.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          pneumoniae SP-BS293]
 gi|302640994|gb|EFL71374.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          pneumoniae BS458]
 gi|302642968|gb|EFL73265.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          pneumoniae BS457]
 gi|302646920|gb|EFL77144.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          pneumoniae BS397]
          Length = 155

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG- 64
          FM  ALR +   + L      + C+IVKDG +IGRG  A         HAE+ A+E+A  
Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIEDANL 68

Query: 65 -EEAR---GATAYVTLEPC 79
           EE+      T +VT+EPC
Sbjct: 69 SEESWRLLDCTLFVTIEPC 87


>gi|288921249|ref|ZP_06415533.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EUN1f]
 gi|288347339|gb|EFC81632.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EUN1f]
          Length = 150

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 6/96 (6%)

Query: 54  HAEVQALEE-AGEEARGATA--YVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDV 109
           HAE  AL + A ++ R ATA  Y TLEPCS     P  C Q I+  GI RVV+   +P +
Sbjct: 54  HAEESALAKIAPDDPRLATATIYSTLEPCSQRRSRPRTCTQLILAAGIPRVVIAWREPSL 113

Query: 110 RVSG-RGLQWLSQKGIIVDRMME-SEGKIFLHAYLT 143
            V+  +G + L+  G+ V  + E  E    ++A+L+
Sbjct: 114 FVADCQGCELLTAAGVTVVELPELGEQARAMNAHLS 149


>gi|148985360|ref|ZP_01818565.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|148986205|ref|ZP_01819157.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          pneumoniae SP3-BS71]
 gi|148995215|ref|ZP_01824050.1| deoxyuridine 5'-triphosphate nucleotidohydrolase [Streptococcus
          pneumoniae SP9-BS68]
 gi|149004172|ref|ZP_01828969.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          pneumoniae SP14-BS69]
 gi|149023458|ref|ZP_01836047.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|168483689|ref|ZP_02708641.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
          CDC1873-00]
 gi|168486729|ref|ZP_02711237.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
          CDC1087-00]
 gi|169833520|ref|YP_001693493.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
          Hungary19A-6]
 gi|221230966|ref|YP_002510118.1| deaminase [Streptococcus pneumoniae ATCC 700669]
 gi|225853633|ref|YP_002735145.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae JJA]
 gi|225857883|ref|YP_002739393.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
          70585]
 gi|237650015|ref|ZP_04524267.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae CCRI
          1974]
 gi|237822610|ref|ZP_04598455.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae CCRI
          1974M2]
 gi|147757834|gb|EDK64845.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          pneumoniae SP14-BS69]
 gi|147921819|gb|EDK72947.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          pneumoniae SP3-BS71]
 gi|147922318|gb|EDK73438.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|147926817|gb|EDK77872.1| deoxyuridine 5'-triphosphate nucleotidohydrolase [Streptococcus
          pneumoniae SP9-BS68]
 gi|147929781|gb|EDK80771.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|168996022|gb|ACA36634.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
          Hungary19A-6]
 gi|172043028|gb|EDT51074.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
          CDC1873-00]
 gi|183570307|gb|EDT90835.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
          CDC1087-00]
 gi|220673426|emb|CAR67886.1| putative deaminase [Streptococcus pneumoniae ATCC 700669]
 gi|225721389|gb|ACO17243.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
          70585]
 gi|225723035|gb|ACO18888.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae JJA]
 gi|301793341|emb|CBW35702.1| putative deaminase [Streptococcus pneumoniae INV104]
 gi|301799211|emb|CBW31724.1| putative deaminase [Streptococcus pneumoniae OXC141]
 gi|332075677|gb|EGI86144.1| cytidine and deoxycytidylate deaminase zinc-binding region family
          protein [Streptococcus pneumoniae GA17570]
 gi|332204048|gb|EGJ18113.1| cytidine and deoxycytidylate deaminase zinc-binding region family
          protein [Streptococcus pneumoniae GA47901]
 gi|332205041|gb|EGJ19104.1| cytidine and deoxycytidylate deaminase zinc-binding region family
          protein [Streptococcus pneumoniae GA47368]
          Length = 155

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64
          FM  ALR +   + L      + C+IVKDG +IGRG  A         HAE+ A+E+A  
Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIEDANL 68

Query: 65 -EEAR---GATAYVTLEPC 79
           EE+      T +VT+EPC
Sbjct: 69 SEESWRLLDCTLFVTIEPC 87


>gi|15899968|ref|NP_344572.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          pneumoniae TIGR4]
 gi|111657255|ref|ZP_01408023.1| hypothetical protein SpneT_02001535 [Streptococcus pneumoniae
          TIGR4]
 gi|148996424|ref|ZP_01824142.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          pneumoniae SP11-BS70]
 gi|149010880|ref|ZP_01832185.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP19-BS75]
 gi|168492307|ref|ZP_02716450.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
          CDC0288-04]
 gi|168576944|ref|ZP_02722786.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
          MLV-016]
 gi|225855809|ref|YP_002737320.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
          P1031]
 gi|307066702|ref|YP_003875668.1| cytosine/adenosine deaminase [Streptococcus pneumoniae AP200]
 gi|14971484|gb|AAK74212.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          pneumoniae TIGR4]
 gi|147756999|gb|EDK64038.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          pneumoniae SP11-BS70]
 gi|147764516|gb|EDK71446.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP19-BS75]
 gi|183573448|gb|EDT93976.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
          CDC0288-04]
 gi|183577431|gb|EDT97959.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
          MLV-016]
 gi|225725405|gb|ACO21257.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
          P1031]
 gi|306408239|gb|ADM83666.1| Cytosine/adenosine deaminase [Streptococcus pneumoniae AP200]
 gi|332077311|gb|EGI87772.1| cytidine and deoxycytidylate deaminase zinc-binding region family
          protein [Streptococcus pneumoniae GA41301]
 gi|332201950|gb|EGJ16019.1| cytidine and deoxycytidylate deaminase zinc-binding region family
          protein [Streptococcus pneumoniae GA41317]
          Length = 155

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG- 64
          FM  ALR +   + L      + C+IVKDG +IGRG  A         HAE+ A+E+A  
Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIEDANL 68

Query: 65 -EEAR---GATAYVTLEPC 79
           EE+      T +VT+EPC
Sbjct: 69 SEESWRLLDCTLFVTIEPC 87


>gi|330872834|gb|EGH06983.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 169

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 24/113 (21%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP--------HAEVQALEEAGE-----EARGATAYVTLE 77
           V  ++V++G +IGRG      CP        HAE+ A+ +A +        G+T YVTLE
Sbjct: 34  VGAVVVQNGEIIGRGYN----CPISGSDPSAHAEMVAIRDAAKALDNYRLPGSTLYVTLE 89

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           PCS       CA  I+   + RVV    +P   +     Q+ SQ G +  R++
Sbjct: 90  PCSM------CAGLIVHSRVARVVYGALEPKAGIVQSQGQFFSQ-GFLNHRVL 135


>gi|264677875|ref|YP_003277782.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
           CNB-2]
 gi|262208388|gb|ACY32486.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
           CNB-2]
          Length = 457

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 44/92 (47%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           V  ++VKDG VIGRG    ++A     HAEV AL EA          G T YVTLEPC+ 
Sbjct: 30  VGAVVVKDGQVIGRGHNSPLSAQDPTAHAEVLALREAARTLGNYRLEGCTLYVTLEPCTM 89

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 C+  ++   +  VV    +P    +G
Sbjct: 90  ------CSGAMLHARVDAVVYGAAEPRTGAAG 115


>gi|92112967|ref|YP_572895.1| tRNA-adenosine deaminase [Chromohalobacter salexigens DSM 3043]
 gi|91796057|gb|ABE58196.1| tRNA-adenosine deaminase [Chromohalobacter salexigens DSM 3043]
          Length = 151

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 33/128 (25%)

Query: 29  PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPC 79
           P  A ++ +DG ++G G    V+++    HAEV+AL +A E        G T +VTLEPC
Sbjct: 25  PVGAVVVARDGDIVGTGFNAPVSSHDPSAHAEVRALRDAAERLGNYRLEGCTLFVTLEPC 84

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
                   C   II   + RVV    +P    SG               M+ES   +F  
Sbjct: 85  LM------CTGAIIHARVARVVYAAAEPR---SG---------------MVESRANLFAQ 120

Query: 140 AYLTRQVE 147
            +   +VE
Sbjct: 121 PWFNHRVE 128


>gi|332880028|ref|ZP_08447712.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332682024|gb|EGJ54937.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 146

 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 38/150 (25%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
           +D  +M  A+ +++      S    V  ++VKD ++I  G   Y G P            
Sbjct: 12  YDKAYMRMAMEWAKLSY---SQRKQVGAIMVKDRMIISDG---YNGTPTGFDNCCEDEEG 65

Query: 54  -------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A+ +   + + ++GAT Y+T+ PC        C++ I + GI+RVV  
Sbjct: 66  NTHWFVLHAEANAIMKVAASTQSSQGATLYITMSPC------KECSKLIYQSGIKRVVYK 119

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
               D      GL +L + G+ +  + E E
Sbjct: 120 EGYRD----NEGLVFLEKAGVELVHLEEVE 145


>gi|329119731|ref|ZP_08248411.1| tRNA-specific adenosine deaminase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464180|gb|EGF10485.1| tRNA-specific adenosine deaminase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 151

 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
           AR M+AAL  +R           V  LIV+DG ++     A         HAE+ AL  A
Sbjct: 7   ARLMAAALDKARQAAAENEV--PVGALIVRDGQILAAAHNACAAQNSVAAHAEILALTAA 64

Query: 64  GEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR---- 114
           G+           AY+TLEPC      P CA  +++  I+RV+    +P    +G     
Sbjct: 65  GQSLGTPRLDSCDAYITLEPC------PMCASALMQARIKRVIFAAAEPKSGAAGSVCNL 118

Query: 115 -GLQWLSQKGIIVDRMMESEGKIFLHAYL 142
                L+    +   +M  E +  L A+ 
Sbjct: 119 FADTRLNAHTAVFGGIMAEESRTLLQAFF 147


>gi|315023983|gb|EFT36985.1| dCMP deaminase [Riemerella anatipestifer RA-YM]
          Length = 143

 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 59/150 (39%), Gaps = 38/150 (25%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53
           + FD  ++  A  +++           V  LIVKD  +I  G   Y G P          
Sbjct: 5   NKFDIAYLKMAQEWAKLSY---CKRKQVGALIVKDRTIISDG---YNGTPSGLENCCEDE 58

Query: 54  ---------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                    HAE  A   L    + A GAT Y+TL PC        C++ I + GI+R+V
Sbjct: 59  QGQTKWYVLHAEANAILKLARTTQTAEGATLYLTLSPC------KECSKLIYQSGIKRLV 112

Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
                 D      GL +L   G+ V ++ +
Sbjct: 113 YI----DHYSDEEGLTFLKNAGVEVTQITQ 138


>gi|225017541|ref|ZP_03706733.1| hypothetical protein CLOSTMETH_01468 [Clostridium methylpentosum
           DSM 5476]
 gi|224949691|gb|EEG30900.1| hypothetical protein CLOSTMETH_01468 [Clostridium methylpentosum
           DSM 5476]
          Length = 145

 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 6/52 (11%)

Query: 54  HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           HAE+ A+  +G++  GA  Y TL PC+       CA+ II+ GI+ VV C D
Sbjct: 64  HAELNAILNSGKDLSGAKLYTTLFPCNE------CAKAIIQSGIKEVVYCSD 109


>gi|317121275|ref|YP_004101278.1| bifunctional deaminase-reductase domain protein [Thermaerobacter
           marianensis DSM 12885]
 gi|315591255|gb|ADU50551.1| bifunctional deaminase-reductase domain protein [Thermaerobacter
           marianensis DSM 12885]
          Length = 252

 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 16/186 (8%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSV--PITGFISKNQVHLLRAQSDAILVGIGTVLADD-- 204
           R ++ + +  + D  + M G G+V  PI   +    +  LRA  DA+L G GTV A D  
Sbjct: 30  RPYVLINMVTTVDGKVTM-GRGTVKEPIGSKVDHALMARLRAPVDAVLRGAGTVRAYDVP 88

Query: 205 ---PELTC---RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
              P+      +  GL    P+ +++     L LD++  + A   P+++ T    P   +
Sbjct: 89  PRVPDEYAERRQARGLPAQ-PLPVVITGSCDLPLDARFFREAPRRPLVL-TRRAAPAEKV 146

Query: 259 AFRKKNINIIYC--DCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
              ++  ++ +   +  +++  L +L  R G+  LL EGG AV  + + + +VD +    
Sbjct: 147 EAVRQVADVAFAGEEKVEMRAALALLRERYGIRRLLSEGGPAVNFAMLEAGVVDELFWTV 206

Query: 316 SQIVIG 321
           +  ++G
Sbjct: 207 APKIVG 212


>gi|302384616|ref|YP_003820438.1| CMP/dCMP deaminase zinc-binding protein [Clostridium
           saccharolyticum WM1]
 gi|302195244|gb|ADL02815.1| CMP/dCMP deaminase zinc-binding protein [Clostridium
           saccharolyticum WM1]
          Length = 164

 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 19/142 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
           + D ++M AA+R +    G     P + C+IV +  +I RG            HAE+ A+
Sbjct: 2   TIDEKYMRAAIRQAE-KAGAMGEVP-IGCVIVYEDKIIARGYNRRTIDKNVLSHAEINAI 59

Query: 61  EEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A  +       G T YVTLEPC      P CA  I++  I +V++   +     +G  
Sbjct: 60  RKACRKVGDWRLEGCTMYVTLEPC------PMCAGAIVQARIPKVIMGCMNAKAGCAGSV 113

Query: 116 LQWLSQKGIIVDRMMESEGKIF 137
           L    Q G+  +  +E+E  + 
Sbjct: 114 LDLFHQDGL--NHQVETESGVL 133


>gi|299141063|ref|ZP_07034201.1| cytidine/deoxycytidylate deaminase family protein [Prevotella oris
           C735]
 gi|298578029|gb|EFI49897.1| cytidine/deoxycytidylate deaminase family protein [Prevotella oris
           C735]
          Length = 150

 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 48/121 (39%), Gaps = 36/121 (29%)

Query: 4   SSFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------- 53
              D R+    LR +R W          V  L+VKD ++I  G   Y G P         
Sbjct: 8   QQLDNRY----LRMARIWAENSYCLRRQVGALVVKDKMIISDG---YNGTPSGFDNVCED 60

Query: 54  ----------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                     HAE  A   L  +   + G+T YVT  PC        CA+ II+ GIRRV
Sbjct: 61  ANQATFPYVLHAEANAITKLARSSNNSDGSTLYVTASPC------IECAKLIIQAGIRRV 114

Query: 101 V 101
           V
Sbjct: 115 V 115


>gi|317126762|ref|YP_004093044.1| CMP/dCMP deaminase zinc-binding protein [Bacillus cellulosilyticus
           DSM 2522]
 gi|315471710|gb|ADU28313.1| CMP/dCMP deaminase zinc-binding protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 161

 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 22/161 (13%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQA 59
           S  D  FM  AL  +   + +      +  +IV+D ++I RG            HAE+ A
Sbjct: 6   SKEDIFFMEQALVEAEKAMEIGEV--PIGAIIVRDNVIIARGHNLREQQQMVTNHAELIA 63

Query: 60  LEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           +++A EE         T YVTLEPC      P CA  I++  ++RVV    DP     G 
Sbjct: 64  IQKACEEVGSWRLEDCTLYVTLEPC------PMCAGAIVQSRMKRVVYGAADPKAGCCGS 117

Query: 115 GLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRS 150
            +  L +  +     +   + E E    L  +  +  +K+ 
Sbjct: 118 LMNLLDEPRLNHQVYVTSGLYEEESSRLLKDFFKKLRQKKK 158


>gi|47095526|ref|ZP_00233135.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           monocytogenes str. 1/2a F6854]
 gi|254899824|ref|ZP_05259748.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           monocytogenes J0161]
 gi|254912971|ref|ZP_05262983.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           monocytogenes J2818]
 gi|254937352|ref|ZP_05269049.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes F6900]
 gi|255025258|ref|ZP_05297244.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           monocytogenes FSL J2-003]
 gi|284800395|ref|YP_003412260.1| hypothetical protein LM5578_0141 [Listeria monocytogenes 08-5578]
 gi|284993581|ref|YP_003415349.1| hypothetical protein LM5923_0141 [Listeria monocytogenes 08-5923]
 gi|47016136|gb|EAL07060.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           monocytogenes str. 1/2a F6854]
 gi|258609958|gb|EEW22566.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes F6900]
 gi|284055957|gb|ADB66898.1| hypothetical protein LM5578_0141 [Listeria monocytogenes 08-5578]
 gi|284059048|gb|ADB69987.1| hypothetical protein LM5923_0141 [Listeria monocytogenes 08-5923]
 gi|293590973|gb|EFF99307.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           monocytogenes J2818]
          Length = 156

 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 21/137 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           +  ++V DG +IGR      T+     HAE+ A+++A +        GA  YVTLEPC  
Sbjct: 25  IGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPC-- 82

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P C+  I+   I +V     DP    +G  +  L          +   +MESE   
Sbjct: 83  ----PMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCEVEAGLMESESSE 138

Query: 137 FLHAYLTRQVEKRSHIT 153
            L ++  +++ KR+ + 
Sbjct: 139 MLKSFF-QELRKRNKLN 154


>gi|330833669|ref|YP_004402494.1| cytosine/adenosine deaminase [Streptococcus suis ST3]
 gi|329307892|gb|AEB82308.1| cytosine/adenosine deaminase [Streptococcus suis ST3]
          Length = 173

 Score = 44.7 bits (104), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
          FM+ AL+ +R    L      + C+IVKDG +IGRG  A         HAEV A++EA  
Sbjct: 11 FMTQALQEAR--KSLEKDEIPIGCVIVKDGQIIGRGHNAREELNQAIMHAEVMAIQEANN 68

Query: 66 -----EARGATAYVTLEPC 79
                   +T +VT+EPC
Sbjct: 69 VEGNWRLLDSTLFVTIEPC 87


>gi|149006819|ref|ZP_01830505.1| deoxyuridine 5'-triphosphate nucleotidohydrolase [Streptococcus
          pneumoniae SP18-BS74]
 gi|307126250|ref|YP_003878281.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
          670-6B]
 gi|147761734|gb|EDK68698.1| deoxyuridine 5'-triphosphate nucleotidohydrolase [Streptococcus
          pneumoniae SP18-BS74]
 gi|306483312|gb|ADM90181.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
          670-6B]
 gi|332076481|gb|EGI86943.1| cytidine and deoxycytidylate deaminase zinc-binding region family
          protein [Streptococcus pneumoniae GA17545]
          Length = 155

 Score = 44.7 bits (104), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG- 64
          FM  ALR +   + L      + C+IVKDG +IGRG  A         HAE+ A+E+A  
Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIEDANL 68

Query: 65 -EEAR---GATAYVTLEPC 79
           EE+      T +VT+EPC
Sbjct: 69 SEESWRLLDCTLFVTIEPC 87


>gi|146319707|ref|YP_001199419.1| cytosine/adenosine deaminase [Streptococcus suis 05ZYH33]
 gi|253752698|ref|YP_003025839.1| deaminase [Streptococcus suis SC84]
 gi|253754524|ref|YP_003027665.1| deaminase [Streptococcus suis P1/7]
 gi|253756457|ref|YP_003029597.1| deaminase [Streptococcus suis BM407]
 gi|145690513|gb|ABP91019.1| Cytosine/adenosine deaminase [Streptococcus suis 05ZYH33]
 gi|251816987|emb|CAZ52636.1| putative deaminase [Streptococcus suis SC84]
 gi|251818921|emb|CAZ56764.1| putative deaminase [Streptococcus suis BM407]
 gi|251820770|emb|CAR47532.1| putative deaminase [Streptococcus suis P1/7]
 gi|292559319|gb|ADE32320.1| Cytosine/adenosine deaminase [Streptococcus suis GZ1]
 gi|319759114|gb|ADV71056.1| cytosine/adenosine deaminase [Streptococcus suis JS14]
          Length = 173

 Score = 44.7 bits (104), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
          FM+ AL+ +R    L      + C+IVKDG +IGRG  A         HAEV A++EA  
Sbjct: 11 FMTQALQEAR--KSLEKDEIPIGCVIVKDGQIIGRGHNAREELNQAIMHAEVMAIQEANN 68

Query: 66 -----EARGATAYVTLEPC 79
                   +T +VT+EPC
Sbjct: 69 VEGNWRLLDSTLFVTIEPC 87


>gi|15902066|ref|NP_357616.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          pneumoniae R6]
 gi|116516620|ref|YP_815440.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          pneumoniae D39]
 gi|148987738|ref|ZP_01819201.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|15457551|gb|AAK98826.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116077196|gb|ABJ54916.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          pneumoniae D39]
 gi|147926202|gb|EDK77275.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP6-BS73]
          Length = 155

 Score = 44.7 bits (104), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64
          FM  ALR +   + L      + C+IVKDG +IGRG  A         HAE+ A+E+A  
Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIEDANL 68

Query: 65 -EEAR---GATAYVTLEPC 79
           EE+      T +VT+EPC
Sbjct: 69 SEESWRLLDCTLFVTIEPC 87


>gi|66358600|ref|XP_626478.1| dCMP deaminase, Dcd1p like [Cryptosporidium parvum Iowa II]
 gi|46227806|gb|EAK88726.1| dCMP deaminase, Dcd1p like [Cryptosporidium parvum Iowa II]
          Length = 373

 Score = 44.7 bits (104), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 12/87 (13%)

Query: 51  GCPHAEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD--P 107
            C HAE  AL  AG ++  GAT YVTL PC        C + II+C I RVV   +   P
Sbjct: 294 SCMHAETNALLFAGIDKCIGATIYVTLMPC------ISCTKNIIQCEIERVVFTTEYAIP 347

Query: 108 DVRVSGRGLQWLSQKGIIVDRMMESEG 134
           D  +S   ++ L    + VDR++E + 
Sbjct: 348 D-EIS--TIKLLRDSNVKVDRLVEKQS 371


>gi|327481727|gb|AEA85037.1| cytidine/deoxycytidylate deaminase [Pseudomonas stutzeri DSM 4166]
          Length = 160

 Score = 44.7 bits (104), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 33/125 (26%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           V  ++V +G ++GRG    ++ +    HAE+ A+  A +  +     G+T YVTLEPCS 
Sbjct: 34  VGAVLVHEGQIVGRGFNCPISRHDPSAHAEMVAIRAAAQALQNYRLPGSTLYVTLEPCSM 93

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
                 CA  I+   ++RVV    +P             + G++V R     G+ F   +
Sbjct: 94  ------CAGLIVHSRVQRVVYGATEP-------------KAGVVVSR-----GQFFDQGF 129

Query: 142 LTRQV 146
           L  +V
Sbjct: 130 LNHRV 134


>gi|67608724|ref|XP_666899.1| dCMP deaminase; Dcd1p [Cryptosporidium hominis TU502]
 gi|54657972|gb|EAL36670.1| dCMP deaminase; Dcd1p [Cryptosporidium hominis]
          Length = 373

 Score = 44.7 bits (104), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 12/87 (13%)

Query: 51  GCPHAEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD--P 107
            C HAE  AL  AG ++  GAT YVTL PC        C + II+C I RVV   +   P
Sbjct: 294 SCMHAETNALLFAGIDKCIGATIYVTLMPC------ISCTKNIIQCEIERVVFTTEYAIP 347

Query: 108 DVRVSGRGLQWLSQKGIIVDRMMESEG 134
           D  +S   ++ L    + VDR++E + 
Sbjct: 348 D-EIS--TIKLLRDSNVKVDRLVEKQS 371


>gi|319953260|ref|YP_004164527.1| cmp/dcmp deaminase zinc-binding protein [Cellulophaga algicola DSM
           14237]
 gi|319421920|gb|ADV49029.1| CMP/dCMP deaminase zinc-binding protein [Cellulophaga algicola DSM
           14237]
          Length = 146

 Score = 44.7 bits (104), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 58/143 (40%), Gaps = 36/143 (25%)

Query: 5   SFDARFMSAALRF-SRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53
           S   ++  A LR  S W          V  +IVKD ++I  G   Y G P          
Sbjct: 4   SKQKKYDKAYLRMASEWGKLSFCKRKQVGAIIVKDRMIISDG---YNGTPTGFENQCEDG 60

Query: 54  ---------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                    HAE  A+ +   + +   GAT Y+TL PC        C++ I + GI+RVV
Sbjct: 61  DGYTKWYVLHAEANAISKVAASTQSCNGATLYITLSPCKE------CSKLIHQSGIKRVV 114

Query: 102 VCVDDPDVRVSGRGLQWLSQKGI 124
                 D      GLQ+L + G+
Sbjct: 115 YQNGYKD----DSGLQFLQKAGV 133


>gi|315644422|ref|ZP_07897555.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus vortex V453]
 gi|315280172|gb|EFU43465.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus vortex V453]
          Length = 163

 Score = 44.7 bits (104), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 22/129 (17%)

Query: 31  VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEARGATA------YVTLEPCS 80
           +  +IV+   +IGRG     T Y G  HAE+ A+ EA +   GA        YVTLEPC 
Sbjct: 38  IGAVIVRGDEIIGRGYNLRETTYDGTAHAEMVAIREASQHL-GAWRLLDCRLYVTLEPC- 95

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGK 135
                P CA  I++  + +++    DP    +G  +  L +     +  ++D +++ E  
Sbjct: 96  -----PMCAGAIVQSRVPQLIYGTGDPKAGCAGTLMNLLQEPRFNHRTTVIDGVLQEECA 150

Query: 136 IFLHAYLTR 144
             L  +  R
Sbjct: 151 SLLTQFFRR 159


>gi|257066772|ref|YP_003153028.1| CMP/dCMP deaminase zinc-binding [Anaerococcus prevotii DSM 20548]
 gi|256798652|gb|ACV29307.1| CMP/dCMP deaminase zinc-binding [Anaerococcus prevotii DSM 20548]
          Length = 180

 Score = 44.7 bits (104), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 56/118 (47%), Gaps = 20/118 (16%)

Query: 1   MPVSSF---DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG---CP 53
           +P ++F   D  FM+ A+  +R  V        V  ++V DG +IGRG    Y G     
Sbjct: 17  IPQNTFSKEDYFFMAEAINEAR--VARFIEEVPVGAVVVYDGKIIGRGHNLTYKGKSALK 74

Query: 54  HAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           HAE+ A++EA            T YVT+EPCS       CA  II   I R+VV + D
Sbjct: 75  HAELMAIKEASSWMDDFRLEECTMYVTMEPCS------MCAGAIINSRIDRLVVGIRD 126


>gi|322378196|ref|ZP_08052680.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          sp. M334]
 gi|321280826|gb|EFX57842.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          sp. M334]
          Length = 155

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG- 64
          FM  ALR +   + L      + C+IVKDG +IGRG  A         HAE+ A+E A  
Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKDGAIIGRGHNAREELQRAVMHAEIMAIENANL 68

Query: 65 -EEAR---GATAYVTLEPC 79
           EE+      T +VT+EPC
Sbjct: 69 SEESWRLLDCTLFVTIEPC 87


>gi|291520377|emb|CBK75598.1| Cytosine/adenosine deaminases [Butyrivibrio fibrisolvens 16/4]
          Length = 179

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 17/121 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
           ++M+ AL+ +R    +      + C+IV++  +I RG     T      HAE+ A+++A 
Sbjct: 29  KYMAQALKEARKAYDINEV--PIGCVIVQNDKIIARGYNRRNTDKSVLAHAEIAAIQKAC 86

Query: 65  EEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           ++         T YVTLEPC        CA  I++  I RVVV   +P    +G  L  L
Sbjct: 87  KKTGDWRLEDCTLYVTLEPCQM------CAGAIVQARIPRVVVGAMNPKAGCAGSILNIL 140

Query: 120 S 120
            
Sbjct: 141 Q 141


>gi|300725950|ref|ZP_07059412.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
           bryantii B14]
 gi|299776801|gb|EFI73349.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
           bryantii B14]
          Length = 144

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 45/110 (40%), Gaps = 32/110 (29%)

Query: 15  LRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------------H 54
           LR +R W          V  L+VKD ++I  G   Y G P                   H
Sbjct: 15  LRMARIWAENSYCKRRKVGALVVKDKMIISDG---YNGTPSGFENICEDDNDVTKPYVLH 71

Query: 55  AEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           AE  A   L  +   + G+T YVT  PC        CA+ II+ GI+RVV
Sbjct: 72  AEANAITKLARSSNNSDGSTLYVTASPCIE------CAKLIIQAGIKRVV 115


>gi|268680105|ref|YP_003304536.1| cytosine deaminase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618136|gb|ACZ12501.1| Cytosine deaminase [Sulfurospirillum deleyianum DSM 6946]
          Length = 146

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64
           +F+ AA+  ++   GL      +  ++V DG ++GRG    V       HAE+  LE AG
Sbjct: 4   KFLEAAIEEAQ--KGLDEGGIPIGSVLVIDGKIVGRGHNQRVQKGSAILHAEMDCLENAG 61

Query: 65  E----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-WL 119
                + R AT Y TL PC        C+  I+  GI ++V+  +      + RG + ++
Sbjct: 62  RLSAADYRNATLYSTLSPCDM------CSGAILLYGIPKLVIGENQ-----TFRGPEAYV 110

Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVE 147
             +G+ V+ + +S+ +  + A++ +  E
Sbjct: 111 KSRGVDVEVLNDSKCRELMEAFIEKNPE 138


>gi|224498434|ref|ZP_03666783.1| hypothetical protein LmonF1_01565 [Listeria monocytogenes Finland
           1988]
          Length = 156

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 21/137 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           +  ++V DG +IGR      T+     HAE+ A+++A +        GA  YVTLEPC  
Sbjct: 25  IGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPC-- 82

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P C+  I+   I +V     DP    +G  +  L          +   +MESE   
Sbjct: 83  ----PMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCEVEAGLMESESSE 138

Query: 137 FLHAYLTRQVEKRSHIT 153
            L ++  +++ KR+ + 
Sbjct: 139 MLKSFF-QELRKRNKMN 154


>gi|158313558|ref|YP_001506066.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EAN1pec]
 gi|158108963|gb|ABW11160.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EAN1pec]
          Length = 162

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 4/104 (3%)

Query: 32  ACLIVKDGIVIGRGVT-AYGGCPHAEVQALEE--AGEEARGATAYVTLEPCSHYGRSP-P 87
           A ++  DG  +  G + A     HAE  AL     G    GAT Y +LEPCS     P  
Sbjct: 45  ALVVAADGTPVAEGYSRAEEPADHAEEVALRRLPPGGLPAGATVYSSLEPCSARASRPRT 104

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
           C + ++  G+RRVV    +P + V   G + L+  G+ V  + E
Sbjct: 105 CTELLLAAGVRRVVFAWREPALFVDCDGAERLAAAGVEVLELAE 148


>gi|254521455|ref|ZP_05133510.1| tRNA-specific adenosine deaminase [Stenotrophomonas sp. SKA14]
 gi|219719046|gb|EED37571.1| tRNA-specific adenosine deaminase [Stenotrophomonas sp. SKA14]
          Length = 174

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 15/122 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           +PV   D  +M  AL  +          P  A L+  DG ++G G    + ++    HAE
Sbjct: 7   VPVHDADEHWMRHALALAERAQREFDEIPVGAVLVGADGQLLGEGWNLNIASHDPSAHAE 66

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+   G+        G+T YVTLEPC+       CA  I+   + R+V    DP    
Sbjct: 67  IVAMRVGGKVLSNHRLLGSTLYVTLEPCA------MCAMAIVHARVSRLVYGASDPKTGA 120

Query: 112 SG 113
            G
Sbjct: 121 CG 122


>gi|225860063|ref|YP_002741572.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
          Taiwan19F-14]
 gi|298229197|ref|ZP_06962878.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae str.
          Canada MDR_19F]
 gi|298254029|ref|ZP_06977615.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae str.
          Canada MDR_19A]
 gi|298501811|ref|YP_003723751.1| cytosine deaminase [Streptococcus pneumoniae TCH8431/19A]
 gi|225728250|gb|ACO24101.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
          Taiwan19F-14]
 gi|298237406|gb|ADI68537.1| possible cytosine deaminase [Streptococcus pneumoniae
          TCH8431/19A]
 gi|327390436|gb|EGE88776.1| cytidine and deoxycytidylate deaminase zinc-binding region family
          protein [Streptococcus pneumoniae GA04375]
          Length = 155

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG- 64
          FM  ALR +   + L      + C+IVKDG +IGRG  A         HAE+ A+E+A  
Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIEDANL 68

Query: 65 --EEAR--GATAYVTLEPC 79
            E  R    T +VT+EPC
Sbjct: 69 SKESWRLLDCTLFVTIEPC 87


>gi|255527107|ref|ZP_05393995.1| CMP/dCMP deaminase zinc-binding [Clostridium carboxidivorans P7]
 gi|296187896|ref|ZP_06856289.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Clostridium carboxidivorans P7]
 gi|255509209|gb|EET85561.1| CMP/dCMP deaminase zinc-binding [Clostridium carboxidivorans P7]
 gi|296047517|gb|EFG86958.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Clostridium carboxidivorans P7]
          Length = 145

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           V  +IVKD I+I R      T      HAE+ A++EA +        G + YVTLEPC  
Sbjct: 23  VGVVIVKDNIIIARAHNLRETLQDTLAHAEILAIKEASQYTNNWRLSGCSMYVTLEPC-- 80

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
               P CA  I++  I  V +   +P+    G
Sbjct: 81  ----PMCAGAILQSRISNVYIGTFEPNTGACG 108


>gi|258510122|ref|YP_003183556.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257476848|gb|ACV57167.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 161

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 25/119 (21%)

Query: 1   MPVSSFDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGC 52
           M   + D RFM  AL  +    RW          V  ++V++G ++G G     T   G 
Sbjct: 1   MMEQAADERFMRRALELAEEAARWG------EVPVGAVVVENGRIVGEGFNRRETWRDGT 54

Query: 53  PHAEVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
            HAE+ A+EEA     G        YVTLEPC      P CA  I+   ++RVV    D
Sbjct: 55  AHAEMLAIEEASRRLGGWRLTNCVLYVTLEPC------PMCAGAIVLSRVQRVVYGATD 107


>gi|51891149|ref|YP_073840.1| putative Cu-binding protein [Symbiobacterium thermophilum IAM
           14863]
 gi|51854838|dbj|BAD38996.1| putative Cu-binding protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 152

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           +  +IV+D  ++ R      T +    HAEV A+ EAG         G T YVT+EPC  
Sbjct: 25  IGAVIVRDSEILVRTHNLRETTHDATAHAEVLAIREAGRLLGGWRLTGCTLYVTIEPC-- 82

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
               P CA  +++  I RVV    DP        L++L   G+
Sbjct: 83  ----PMCAGALLQSRIDRVVFGARDPKAWADRSILEFLQNPGL 121


>gi|258620044|ref|ZP_05715084.1| zinc-binding domain protein [Vibrio mimicus VM573]
 gi|258587777|gb|EEW12486.1| zinc-binding domain protein [Vibrio mimicus VM573]
          Length = 178

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 27/141 (19%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           V  ++V+DG +I  G    +T +    HAE++ + +AG+          T YVTLEPC  
Sbjct: 40  VGAVLVRDGEIIAEGWNCSITHHDATAHAEIEVIRKAGKVLSNYRLLDTTLYVTLEPC-- 97

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-------QWLSQKGIIVDRMMESEG 134
               P CA  ++   ++R+V     PD++    G        Q       +   ++E E 
Sbjct: 98  ----PMCAGALLHSRVKRIVYGA--PDLKAGAAGTVMDLFNSQASYHYATVEKGLLEEEC 151

Query: 135 KIFLHAYLTRQVEKRSHITLK 155
           +  L A+  R   +R  I  K
Sbjct: 152 RAQLQAFFQR---RRKEIKAK 169


>gi|84388906|ref|ZP_00991114.1| Cytosine/adenosine deaminase [Vibrio splendidus 12B01]
 gi|84376970|gb|EAP93842.1| Cytosine/adenosine deaminase [Vibrio splendidus 12B01]
          Length = 194

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 20/129 (15%)

Query: 31  VACLIVKDGIVI----GRGVTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++VK+G +I     R + ++    HAE++ L +AG+          T YVTLEPC  
Sbjct: 32  VGAVLVKEGEIISEGWNRSIGSHDATAHAEIETLRKAGQALENYRLLDTTLYVTLEPC-- 89

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P CA  ++   ++R+V    D     +G  L     +       + + ++E E + 
Sbjct: 90  ----PMCAGALLHSRVKRIVFGAPDLKAGAAGTVLNLFESQASYHYADVENGLLEQECRD 145

Query: 137 FLHAYLTRQ 145
            L A+  R+
Sbjct: 146 QLQAFFKRR 154


>gi|315612142|ref|ZP_07887058.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis ATCC
          49296]
 gi|315315805|gb|EFU63841.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis ATCC
          49296]
          Length = 155

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG- 64
          FM  ALR +   + L      + C+IVKDG +IGRG  A         HAE+ A+E A  
Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIENANV 68

Query: 65 -EEAR---GATAYVTLEPC 79
           EE+      T +VT+EPC
Sbjct: 69 SEESWRLLNCTLFVTIEPC 87


>gi|224538415|ref|ZP_03678954.1| hypothetical protein BACCELL_03309 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519974|gb|EEF89079.1| hypothetical protein BACCELL_03309 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 153

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 49/119 (41%), Gaps = 34/119 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           + D R++  A   S W          V  LIVKD ++I  G   Y G P           
Sbjct: 11  ALDKRYIRMA---SIWAENSYCKRRQVGALIVKDKMIISDG---YNGTPAGFENVCEDDN 64

Query: 54  --------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                   HAE  A+ +   +   + GAT YVT  PC        C++ II+ GI+RVV
Sbjct: 65  NVTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CSKLIIQAGIKRVV 117


>gi|319940016|ref|ZP_08014370.1| tRNA-specific adenosine deaminase [Streptococcus anginosus
          1_2_62CV]
 gi|319810730|gb|EFW07057.1| tRNA-specific adenosine deaminase [Streptococcus anginosus
          1_2_62CV]
          Length = 155

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
          FM  AL+ +   + L +    + C+IVK+G +IGRG  A         HAEV A+E+A +
Sbjct: 11 FMREALKEA--EIALVNDEIPIGCVIVKNGEIIGRGHNAREELQRAVMHAEVMAIEKANQ 68

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 69 HEHSWRLLDTTLFVTIEPC 87


>gi|262172118|ref|ZP_06039796.1| tRNA-specific adenosine-34 deaminase [Vibrio mimicus MB-451]
 gi|261893194|gb|EEY39180.1| tRNA-specific adenosine-34 deaminase [Vibrio mimicus MB-451]
          Length = 170

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 27/141 (19%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           V  ++V+DG +I  G    +T +    HAE++ + +AG+          T YVTLEPC  
Sbjct: 32  VGAVLVRDGEIIAEGWNCSITHHDATAHAEIEVIRKAGKVLSNYRLLDTTLYVTLEPC-- 89

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-------QWLSQKGIIVDRMMESEG 134
               P CA  ++   ++R+V     PD++    G        Q       +   ++E E 
Sbjct: 90  ----PMCAGALLHSRVKRIVYGA--PDLKAGAAGTVMDLFNSQASYHYATVEKGLLEEEC 143

Query: 135 KIFLHAYLTRQVEKRSHITLK 155
           +  L A+  R   +R  I  K
Sbjct: 144 RAQLQAFFQR---RRKEIKAK 161


>gi|257126237|ref|YP_003164351.1| CMP/dCMP deaminase zinc-binding [Leptotrichia buccalis C-1013-b]
 gi|257050176|gb|ACV39360.1| CMP/dCMP deaminase zinc-binding [Leptotrichia buccalis C-1013-b]
          Length = 161

 Score = 44.3 bits (103), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 36/157 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGV--------------- 46
           S+D  FM  A        G+ S +PS    AC+I +D  +IG G                
Sbjct: 9   SWDEYFMGIAFL-----SGMRSKDPSTQVGACIIDEDKKIIGIGYNGFPMGSSDDSMPWD 63

Query: 47  -------TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                  T Y    HAE+ A+  + +  + +T YVT  PC+       CA+ I++ GI++
Sbjct: 64  KDGEFLDTKYPYVVHAELNAILNSIKSLKNSTIYVTHFPCNE------CAKAIVQSGIKK 117

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI 136
           V+   D      S +  + + +   +  + +E E ++
Sbjct: 118 VIYFSDKHKSLDSTKASKRIFENAQVETKHLEIEKEV 154


>gi|307710059|ref|ZP_07646503.1| tRNA-specific adenosine deaminase [Streptococcus mitis SK564]
 gi|307619039|gb|EFN98171.1| tRNA-specific adenosine deaminase [Streptococcus mitis SK564]
          Length = 155

 Score = 44.3 bits (103), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64
          FM  ALR +   + L      + C+IVKDG +IGRG  A         HAE+ A+E A  
Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKDGKIIGRGHNAREELQRAVMHAEIMAIENANL 68

Query: 65 -EEAR---GATAYVTLEPC 79
           EE+      T +VT+EPC
Sbjct: 69 REESWRLLDCTLFVTIEPC 87


>gi|330830279|ref|YP_004393231.1| CMP/dCMP deaminase zinc-binding protein [Aeromonas veronii B565]
 gi|328805415|gb|AEB50614.1| CMP/dCMP deaminase zinc-binding protein [Aeromonas veronii B565]
          Length = 201

 Score = 44.3 bits (103), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V DG V+G G    ++ +  C HAEV A+  AG++         T YVTLEPC  
Sbjct: 60  VGAVLVLDGQVVGEGWNRSISEHDACAHAEVMAIRAAGKQLANYRLLDTTLYVTLEPCCM 119

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 CA  +I   ++RVV    D     +G
Sbjct: 120 ------CAGALIHSRVKRVVYGARDLKTGAAG 145


>gi|269792349|ref|YP_003317253.1| CMP/dCMP deaminase zinc-binding protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099984|gb|ACZ18971.1| CMP/dCMP deaminase zinc-binding protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 153

 Score = 44.3 bits (103), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 17/113 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG--VTAYGGCP--HAEVQALEEAGE 65
           FM  ALR +   + + + +  V  ++V +G+V+GRG  V    G P  HAE+ A+ +A  
Sbjct: 3   FMREALREA--ELAMEAGDVPVGAVVVMNGLVVGRGRNVRELTGDPLGHAEMVAIRDACS 60

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                   GA+ YVTLEPC        CA  I++C I  V   + DP     G
Sbjct: 61  ALGTWRLDGASLYVTLEPCVM------CAGAILQCRISEVHFALRDPKAGAVG 107


>gi|253731164|ref|ZP_04865329.1| deaminase [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253725129|gb|EES93858.1| deaminase [Staphylococcus aureus subsp. aureus USA300_TCH959]
          Length = 156

 Score = 44.3 bits (103), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 56/135 (41%), Gaps = 21/135 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM+ A++ ++    L      +  +I KD  VI R      T      HAE  A+E 
Sbjct: 4   DIYFMTLAIKEAKKAAQLGEV--PIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIER 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +        G T YVTLEPC        CA  I+   I RVV   DDP    SG  + 
Sbjct: 62  AAKVLGSWRLEGCTLYVTLEPCVM------CAGTIVMSRIPRVVYGADDPKGGCSGSLMN 115

Query: 118 WLSQKGI----IVDR 128
            L Q       IVD+
Sbjct: 116 LLQQSNFNHRAIVDK 130


>gi|146283335|ref|YP_001173488.1| cytidine/deoxycytidylate deaminase [Pseudomonas stutzeri A1501]
 gi|145571540|gb|ABP80646.1| cytidine/deoxycytidylate deaminase [Pseudomonas stutzeri A1501]
          Length = 145

 Score = 44.3 bits (103), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 33/125 (26%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           V  ++V +G ++GRG    ++ +    HAE+ A+  A +  +     G+T YVTLEPCS 
Sbjct: 19  VGAVLVHEGQIVGRGFNCPISRHDPSAHAEMVAIRAAAQALQNYRLPGSTLYVTLEPCSM 78

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
                 CA  I+   ++RVV    +P             + G++V R     G+ F   +
Sbjct: 79  ------CAGLIVHSRVQRVVYGATEP-------------KAGVVVSR-----GQFFDQGF 114

Query: 142 LTRQV 146
           L  +V
Sbjct: 115 LNHRV 119


>gi|94496883|ref|ZP_01303457.1| Putative cytosine/adenosine deaminase [Sphingomonas sp. SKA58]
 gi|94423559|gb|EAT08586.1| Putative cytosine/adenosine deaminase [Sphingomonas sp. SKA58]
          Length = 175

 Score = 44.3 bits (103), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 10/82 (12%)

Query: 7  DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEE 62
          D+++M  A+  +R   G +  +  +A +IV DG V+ +GV           HAE+ A   
Sbjct: 17 DSKWMQRAIDLAR-SKGSSPQDTPIAAIIVLDGAVLAQGVNETDERCDATAHAEMMAFRA 75

Query: 63 AGE-----EARGATAYVTLEPC 79
          AG+     + RGAT Y TL+PC
Sbjct: 76 AGQVHGDMDLRGATLYSTLQPC 97


>gi|19113382|ref|NP_596590.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Schizosaccharomyces pombe 972h-]
 gi|54036317|sp|Q9P7L3|RIB7_SCHPO RecName: Full=Putative 5-amino-6-(5-phosphoribosylamino)uracil
           reductase; AltName: Full=HTP reductase
 gi|7106075|emb|CAB76046.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Schizosaccharomyces pombe]
          Length = 268

 Score = 44.3 bits (103), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 83/210 (39%), Gaps = 40/210 (19%)

Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMIGM----AGCGSVPITGFISKNQVHLLRAQSDAIL 194
            AY      K+ H+ L  A S +  IG        G + ++   S    HLLR + D I+
Sbjct: 5   QAYFPPSANKK-HVLLTWAQSINGRIGYVVESPSLGQLRLSSKESFVMTHLLRTKFDGIM 63

Query: 195 VGIGTVLADDPELTCRLNGLQ--------EHSPMRIILDPHFKLSLDS-KIIKTA----- 240
           VG  T   D+P LT +L               P+ II+D + +L   S K+I+ A     
Sbjct: 64  VGSRTAENDNPSLTAKLPDPANPDCLLPLNKQPIPIIVDSNLRLDYASLKVIRLARERLG 123

Query: 241 -----LLAPVIIVTENDDPVLALA------------FRKKNINIIYCDCRDLKKLLTILV 283
                ++AP I      D  L  A             R ++    + D   L KLL    
Sbjct: 124 KPPLIIVAPSIWQQVQHDSKLKEAVKLIQSVGGRCIIRNEDSPDSWSDYVALDKLLQ--- 180

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
             GV  ++VEGGA +      S  +D+ ++
Sbjct: 181 -NGVNRIMVEGGAELLAKAFGSTDIDAYVV 209


>gi|254830845|ref|ZP_05235500.1| hypothetical protein Lmon1_05774 [Listeria monocytogenes 10403S]
          Length = 156

 Score = 44.3 bits (103), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 21/137 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           +  ++V DG +IGR      T+     HAE+ A+++A +        GA  YVTLEPC  
Sbjct: 25  IGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPC-- 82

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P C+  I+   I +V     DP    +G  +  L          +   +MESE   
Sbjct: 83  ----PMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCEVEAGLMESESSE 138

Query: 137 FLHAYLTRQVEKRSHIT 153
            L ++  +++ KR+   
Sbjct: 139 MLKSFF-QELRKRNRFN 154


>gi|119509403|ref|ZP_01628552.1| cytosine deaminase [Nodularia spumigena CCY9414]
 gi|119466017|gb|EAW46905.1| cytosine deaminase [Nodularia spumigena CCY9414]
          Length = 143

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 14/99 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64
            FM AA+  ++   G       +  ++VKDG +IGRG    V       HAE+  L  AG
Sbjct: 3   EFMEAAIAQAKQ--GRKEGGIPIGSVLVKDGKIIGRGHNKRVQDNDPVTHAEIDCLRNAG 60

Query: 65  E--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                RG T Y TL PC        CA  +++ GI++V+
Sbjct: 61  RVGSYRGTTLYSTLMPCY------LCAGAVVQFGIKKVI 93


>gi|260061092|ref|YP_003194172.1| deoxycytidylate deaminase [Robiginitalea biformata HTCC2501]
 gi|88785224|gb|EAR16393.1| deoxycytidylate deaminase [Robiginitalea biformata HTCC2501]
          Length = 150

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 36/139 (25%)

Query: 9   RFMSAALRFS-RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53
           ++  A LR +  W          V  +IV++ ++I  G   Y G P              
Sbjct: 8   KYDKAYLRMANEWGKLSYCRRKQVGAIIVRERMIISDG---YNGTPSGFENFCEDEEGYT 64

Query: 54  -----HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE  A+ +   + +   GAT Y+TL PC        C++ I +CGIRRVV    
Sbjct: 65  KWYVLHAEANAISKVASSTQSCEGATLYITLSPCRE------CSKLIHQCGIRRVVYQKA 118

Query: 106 DPDVRVSGRGLQWLSQKGI 124
             D      GLQ+L++ G+
Sbjct: 119 YKD----DSGLQFLARAGV 133


>gi|302037080|ref|YP_003797402.1| tRNA-specific adenosine deaminase [Candidatus Nitrospira defluvii]
 gi|300605144|emb|CBK41477.1| tRNA-specific adenosine deaminase [Candidatus Nitrospira defluvii]
          Length = 162

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 52/122 (42%), Gaps = 17/122 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           +P+   D RFM  AL  +R    L    P +A L+V +GIVI +      T      HAE
Sbjct: 2   LPLDDPDTRFMQQALTLAR-SAPLIGEVP-IAALLVHEGIVIAQAHNLRETRQDPTAHAE 59

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           V  +++A            T YVTLEPC+       C   I+   I R+V    DP    
Sbjct: 60  VIVIQDAARHMGSWRLINTTLYVTLEPCTM------CIGAIVLARIPRLVFAATDPKAGA 113

Query: 112 SG 113
            G
Sbjct: 114 CG 115


>gi|289435993|ref|YP_003465865.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289172237|emb|CBH28783.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 156

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 21/136 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           +  ++V DG +IGR      T+     HAE+ A+++A    +     GA  YVTLEPC  
Sbjct: 25  IGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACNHQKSWRLSGAELYVTLEPC-- 82

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P C+  I+   I +V     DP    +G  +  L          +   +ME+E   
Sbjct: 83  ----PMCSGAILLSRIDKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCEVESGLMEAESSE 138

Query: 137 FLHAYLTRQVEKRSHI 152
            L ++  +++ KR  I
Sbjct: 139 MLKSFF-QELRKRKKI 153


>gi|187934949|ref|YP_001887626.1| tRNA-specific adenosine deaminase [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723102|gb|ACD24323.1| tRNA-specific adenosine deaminase [Clostridium botulinum B str.
           Eklund 17B]
          Length = 152

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 21/120 (17%)

Query: 22  VGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATA 72
           + ++     +  +IVKD IVI +      T      HAE+ A+ +A +       +G   
Sbjct: 13  IAMSKGEVPIGAVIVKDDIVISKAHNLKETLKDATAHAEILAIRKAAKFLGDWRLKGTEM 72

Query: 73  YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
           YVTLEPCS       CA  II+  I ++ +   + D+   G      S   +I DR +ES
Sbjct: 73  YVTLEPCSM------CASAIIQSRISKLHIGTFNKDMGACG------SVINLIDDRQLES 120


>gi|121702783|ref|XP_001269656.1| cytosine deaminase, putative [Aspergillus clavatus NRRL 1]
 gi|119397799|gb|EAW08230.1| cytosine deaminase, putative [Aspergillus clavatus NRRL 1]
          Length = 148

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 18/127 (14%)

Query: 29  PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG----EEARGATAYVTLEPCS 80
           P  A L+ KDG ++GRG    V       HAE+ ALE++G        GAT Y TL PC 
Sbjct: 24  PIGAALVSKDGKILGRGHNMRVQKGSAVLHAEMAALEDSGRLPGSAYEGATMYTTLSPCD 83

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
                  C    I   ++RVV+  +   V     G ++L  +G  V  +   E K F+ A
Sbjct: 84  M------CTGACILYNVKRVVIGENKNFV----GGEEYLLSRGREVVVLDNEECKEFMGA 133

Query: 141 YLTRQVE 147
           ++  + E
Sbjct: 134 FIKEKPE 140


>gi|332140490|ref|YP_004426228.1| cytidine/deoxycytidylate deaminase family protein [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327550512|gb|AEA97230.1| cytidine/deoxycytidylate deaminase family protein [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 223

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 16/105 (15%)

Query: 29  PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPC 79
           P  AC+++ +G +IG G    ++ +    HAE++A+++A  + +      AT YVTLEPC
Sbjct: 80  PVGACVVL-NGELIGEGYNTPISDHDPSAHAELRAVKQAASKVQNYRLIDATLYVTLEPC 138

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           S       CA  ++   ++RVV    D     +G  +  L    +
Sbjct: 139 SM------CAGMLVHARVKRVVFGAKDAKTGAAGSVMNLLQHPAL 177


>gi|94969013|ref|YP_591061.1| tRNA-adenosine deaminase [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551063|gb|ABF40987.1| tRNA-adenosine deaminase [Candidatus Koribacter versatilis
           Ellin345]
          Length = 152

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 59/144 (40%), Gaps = 27/144 (18%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT--AYGGCP--HAEVQALEE 62
           D  FM  ALR +       S    +  ++V    +IGRG    A+   P  HAE+ A+ E
Sbjct: 3   DELFMEEALREA--ARAQASGEVPIGAVVVYQDKIIGRGWNRPAFECDPTAHAEIIAIRE 60

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AG E           +VTLEPC+       CA  I    IRR++   DDP        LQ
Sbjct: 61  AGRELGNYRLTDCELFVTLEPCAM------CAGAITHARIRRLIYAADDPKAGAVKSALQ 114

Query: 118 WLSQ----------KGIIVDRMME 131
            L+            G++  R ME
Sbjct: 115 VLNHPALNHQVEITSGVLAGRAME 138


>gi|221133296|ref|ZP_03559601.1| CMP/dCMP deaminase, zinc-binding protein [Glaciecola sp. HTCC2999]
          Length = 175

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 15/100 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  +IV D  +IG G    +  +  C HAE+ A++ A +         AT YVTLEPC+ 
Sbjct: 32  VGAVIVLDNQIIGEGYNRSIINHDPCGHAEIMAIQSAAQHINNYRILDATMYVTLEPCA- 90

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                 CA  I+   ++RVV    D     +G  L  L  
Sbjct: 91  -----MCAGAIVHARMKRVVFGASDLKTGCAGSILNLLQH 125


>gi|109900168|ref|YP_663423.1| cytosine deaminase [Pseudoalteromonas atlantica T6c]
 gi|109702449|gb|ABG42369.1| Cytosine deaminase [Pseudoalteromonas atlantica T6c]
          Length = 145

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 16/102 (15%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP--HAEVQALEEAG 64
           +FM AA+  ++  +GL      +  ++V +  +IGRG       G P  H E+ ALE AG
Sbjct: 3   KFMQAAIDEAK--LGLAEGGIPIGSVLVHNNKIIGRGHNKRVQSGSPILHGEMDALENAG 60

Query: 65  EEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
            +     + +T Y TL PCS       C+  I+  GI +VV+
Sbjct: 61  RQPARVYKESTLYTTLSPCSM------CSGTILLYGIPKVVI 96


>gi|255534332|ref|YP_003094703.1| Deoxycytidylate deaminase [Flavobacteriaceae bacterium 3519-10]
 gi|255340528|gb|ACU06641.1| Deoxycytidylate deaminase [Flavobacteriaceae bacterium 3519-10]
          Length = 141

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 38/146 (26%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M  + FD  ++  A+ +++           V  LIVKD ++I  G   Y G P       
Sbjct: 1   MEPTKFDFAYLKMAMEWAKLS---HCERRKVGALIVKDRMIISDG---YNGTPSGFENCC 54

Query: 54  ------------HAEVQA-LEEAG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE  A L+ AG  + A+ AT Y+TL PC        C++  ++ GI+
Sbjct: 55  EDSEGKTHWYVLHAEANAILKLAGSTQSAKDATLYLTLSPCR------DCSKLAVQAGIK 108

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +VV   D  D      G+ +L   GI
Sbjct: 109 KVVYMDDYSD----NAGITFLQDHGI 130


>gi|317503536|ref|ZP_07961560.1| cytidine/deoxycytidylate deaminase [Prevotella salivae DSM 15606]
 gi|315665348|gb|EFV04991.1| cytidine/deoxycytidylate deaminase [Prevotella salivae DSM 15606]
          Length = 150

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 49/120 (40%), Gaps = 36/120 (30%)

Query: 5   SFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53
           + D R+    LR +R W          V  L+VKD ++I  G   Y G P          
Sbjct: 9   NLDNRY----LRMARIWAENSYCLRRQVGALVVKDKMIISDG---YNGTPSGFDNVCEDN 61

Query: 54  ---------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                    HAE  A   L  +   + G+T YVT  PC        CA+ II+ GI+RVV
Sbjct: 62  EGVTYPYVLHAEANAITKLARSNNNSDGSTLYVTASPCIE------CAKLIIQAGIKRVV 115


>gi|297568720|ref|YP_003690064.1| bifunctional deaminase-reductase domain protein [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924635|gb|ADH85445.1| bifunctional deaminase-reductase domain protein [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 212

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 83/207 (40%), Gaps = 17/207 (8%)

Query: 166 MAGCGSVPITGFISKNQVHLL---RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222
           M  CG +      S+     L   R  +DA L+G GT+   D E+     G+   + +R 
Sbjct: 9   MTLCGRISPATMGSRQDRRFLEESRQATDASLLGAGTLREGDAEMRGP-GGILPENRIRA 67

Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA--LAFRKKNINIIYCD-CRDLKKLL 279
           I+    +L L+ + I      P+I         LA     R + I +   D   DL    
Sbjct: 68  IISASGRLPLEQRKIFQIGPRPLIFTAAERAKSLADQAGQRAEVIALPAKDGFLDLAAAC 127

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL--------YRSQIVIGEGGIPSPLEE 331
             L  RGV  LL+EGG  +    +  R+VD +++        +R+ I + +G    PL +
Sbjct: 128 RKLARRGVKELLLEGGGTLNFHALRQRIVDELLVTIAPKLSGHRAAISLADGA--EPLGD 185

Query: 332 GYLEKNFMCVRRDYFGSDVCLEYIGKN 358
            +L+   +       G   C   + KN
Sbjct: 186 PFLDLQLLSCHPTLNGELFCRYRVNKN 212


>gi|292493710|ref|YP_003529149.1| CMP/dCMP deaminase zinc-binding protein [Nitrosococcus halophilus
           Nc4]
 gi|291582305|gb|ADE16762.1| CMP/dCMP deaminase zinc-binding protein [Nitrosococcus halophilus
           Nc4]
          Length = 142

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 17/116 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           V  ++V++G ++  G    +TA     HAE+QA+  A ++       G T YVTLEPC+ 
Sbjct: 19  VGAVLVQEGEMVAEGWNCPITAKDPTAHAEIQAIRAASQQLGNYRLVGTTLYVTLEPCAM 78

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
                 CA  II+  I+RVV    DP    +G  L  L   G  ++  ++ +G I 
Sbjct: 79  ------CAGAIIQARIQRVVFGAFDPKGGAAGSVLSIL--PGDRLNHQVQCQGGIL 126


>gi|148266168|ref|YP_001232874.1| CMP/dCMP deaminase, zinc-binding [Geobacter uraniireducens Rf4]
 gi|146399668|gb|ABQ28301.1| CMP/dCMP deaminase, zinc-binding protein [Geobacter uraniireducens
           Rf4]
          Length = 160

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 20/132 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65
           FM AAL  ++   G       +  +IV +G +IGRG    V       H E+ ALE AG 
Sbjct: 19  FMQAALAEAKQ--GQAEGGIPIGSVIVHNGRIIGRGHNRRVQKGSAILHGEMDALENAGR 76

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +     R  T Y TL PC+       C+  I+  GI RV+V     + R      + L  
Sbjct: 77  QTAAVYRECTLYTTLSPCAM------CSGAILLYGIPRVIV----GENRTFLGEEELLKS 126

Query: 122 KGIIVDRMMESE 133
           +G+ VD + E E
Sbjct: 127 RGVTVDVLQEQE 138


>gi|327403586|ref|YP_004344424.1| CMP/dCMP deaminase zinc-binding protein [Fluviicola taffensis DSM
           16823]
 gi|327319094|gb|AEA43586.1| CMP/dCMP deaminase zinc-binding protein [Fluviicola taffensis DSM
           16823]
          Length = 150

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 36/141 (25%)

Query: 9   RFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53
           R+  A LR ++ W          V  LIV+DG +I  G   Y G P              
Sbjct: 16  RYDKAYLRMAQTWAELSHCERKKVGALIVRDGRIISDG---YNGTPAGFENCCEDQNGNT 72

Query: 54  -----HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE  A+     +  +  GAT ++TL PC        C++ +++ GI+RVV  ++
Sbjct: 73  QWYVLHAEANAILKVARSTNDCSGATLFITLSPC------KDCSKLVLQAGIKRVVYMME 126

Query: 106 DPDVRVSGRGLQWLSQKGIIV 126
             D      G+ +L   G+ V
Sbjct: 127 YKDT----TGVDFLKSAGVEV 143


>gi|189467913|ref|ZP_03016698.1| hypothetical protein BACINT_04305 [Bacteroides intestinalis DSM
           17393]
 gi|189436177|gb|EDV05162.1| hypothetical protein BACINT_04305 [Bacteroides intestinalis DSM
           17393]
          Length = 156

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 49/119 (41%), Gaps = 34/119 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           + D R++  A   S W          V  LIVKD ++I  G   Y G P           
Sbjct: 11  ALDKRYIRMA---SIWAENSYCKRRQVGALIVKDKMIISDG---YNGTPAGFENVCEDDN 64

Query: 54  --------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                   HAE  A+ +   +   + GAT YVT  PC        C++ II+ GI+RVV
Sbjct: 65  NVTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CSKLIIQAGIKRVV 117


>gi|254458782|ref|ZP_05072206.1| cytosine deaminase [Campylobacterales bacterium GD 1]
 gi|207084548|gb|EDZ61836.1| cytosine deaminase [Campylobacterales bacterium GD 1]
          Length = 145

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 20/120 (16%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65
           F+  A++ ++   GL+     +  ++V DG ++GRG    V       HAE+  LE AG 
Sbjct: 4   FLEEAIKEAK--KGLSEGGIPIGSVLVIDGKIVGRGHNRRVQNSSAILHAEMDCLENAGR 61

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV----CVDDPDVRVSGRGLQ 117
               + + AT Y TL PC        C+  I+  GI+RV++        P+  V  RG++
Sbjct: 62  LKAIDYKRATIYSTLSPCDM------CSGAILLYGIKRVIIGENKTFKGPEEYVKSRGIE 115


>gi|163749537|ref|ZP_02156784.1| cytidine/deoxycytidylate deaminase family protein [Shewanella
           benthica KT99]
 gi|161330647|gb|EDQ01584.1| cytidine/deoxycytidylate deaminase family protein [Shewanella
           benthica KT99]
          Length = 189

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 17/118 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
           + D  FMS A+  +R    +      V  +++KDG ++  G    +  +    HAE+Q L
Sbjct: 20  ALDKHFMSMAMEMARKAEAVGEV--PVGAVLIKDGELVSAGFNYCIGLHDPSAHAEMQCL 77

Query: 61  EEAG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            +AG   E  R    T YVTLEPC+       CA  ++   I R+V    D     +G
Sbjct: 78  RQAGKVIENYRLLNTTLYVTLEPCA------MCAGAMVHSRIERLVFGAKDDKTGAAG 129


>gi|325001093|ref|ZP_08122205.1| bifunctional deaminase-reductase-like protein [Pseudonocardia sp.
           P1]
          Length = 102

 Score = 43.9 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 8/84 (9%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R ++   +A+S D  I  AG  ++ ++  +  ++V  +RA+ DA+LVG GTV  DDP L 
Sbjct: 5   RPYVLASVAMSLDGYIDDAGPATLVLSDAVDLDRVDGVRAEVDAVLVGAGTVRNDDPRLL 64

Query: 209 CRLNGLQEH--------SPMRIIL 224
            R +  +          SP+R+++
Sbjct: 65  VRSDRRRAERVAAGRAPSPLRVVV 88


>gi|307704429|ref|ZP_07641340.1| tRNA-specific adenosine deaminase [Streptococcus mitis SK597]
 gi|307707916|ref|ZP_07644391.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          mitis NCTC 12261]
 gi|307615981|gb|EFN95179.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          mitis NCTC 12261]
 gi|307622002|gb|EFO01028.1| tRNA-specific adenosine deaminase [Streptococcus mitis SK597]
          Length = 155

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64
          FM  ALR +   + L      + C+IVKDG +IGRG  A         HAE+ A+E A  
Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIENANL 68

Query: 65 -EEAR---GATAYVTLEPC 79
           EE+      T +VT+EPC
Sbjct: 69 SEESWRLLDCTLFVTIEPC 87


>gi|313206907|ref|YP_004046084.1| cmp/dcmp deaminase zinc-binding protein [Riemerella anatipestifer
           DSM 15868]
 gi|312446223|gb|ADQ82578.1| CMP/dCMP deaminase zinc-binding protein [Riemerella anatipestifer
           DSM 15868]
 gi|325335656|gb|ADZ11930.1| Deoxycytidylate deaminase [Riemerella anatipestifer RA-GD]
          Length = 143

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 58/148 (39%), Gaps = 38/148 (25%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53
           + FD  ++  A  +++           V  LIVKD  +I  G   Y G P          
Sbjct: 5   NKFDIAYLKMAQEWAKLSY---CKRKQVGALIVKDRTIISDG---YNGTPSGLENCCEDE 58

Query: 54  ---------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                    HAE  A   L    + A GAT Y+TL PC        C++ I + GI+R+V
Sbjct: 59  QGQTKWYVLHAEANAILKLARTTQTAEGATLYLTLSPCKE------CSKLIYQSGIKRLV 112

Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
                 D      GL +L   G+ V ++
Sbjct: 113 YI----DHYSDEEGLTFLKNAGVEVTQI 136


>gi|319948958|ref|ZP_08023063.1| hypothetical protein ES5_06172 [Dietzia cinnamea P4]
 gi|319437396|gb|EFV92411.1| hypothetical protein ES5_06172 [Dietzia cinnamea P4]
          Length = 88

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 2  PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQAL 60
          P    +   ++ A+  SR  +G+++ NP V  +++   G V+GRG T   G  HAEV AL
Sbjct: 16 PARRLERAALAEAIALSRAALGVSTPNPPVGAVVLDAAGGVVGRGATEAPGGRHAEVVAL 75

Query: 61 EEAGE 65
          +EAG+
Sbjct: 76 DEAGD 80


>gi|300311527|ref|YP_003775619.1| cytosine/adenosine deaminases protein [Herbaspirillum seropedicae
           SmR1]
 gi|300074312|gb|ADJ63711.1| cytosine/adenosine deaminases protein [Herbaspirillum seropedicae
           SmR1]
          Length = 185

 Score = 43.9 bits (102), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 70/175 (40%), Gaps = 29/175 (16%)

Query: 7   DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
           D   M AAL  +R  W +G       V  ++VKDG+VI  G    +  +    HAE+ AL
Sbjct: 18  DLLHMRAALEQARHAWALGEVP----VGAVVVKDGVVIATGFNQPIGKHDPTAHAEIMAL 73

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A E        G   YVTLEPC        C+  ++   + RVV    DP     G  
Sbjct: 74  RRAAEILGNYRLPGCELYVTLEPCVM------CSGAMMHARLARVVFGAADPKTGACGSV 127

Query: 116 LQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAV---SQDN 162
           L    Q  +     ++  +M  E    L  +   + E+     L+ A    SQ+N
Sbjct: 128 LNLFEQDQLNHHTALLGGVMAEECGQLLKDFFAMRREQLKQQRLQAAAGEGSQEN 182


>gi|149908700|ref|ZP_01897361.1| putative zinc-binding protein [Moritella sp. PE36]
 gi|149808242|gb|EDM68181.1| putative zinc-binding protein [Moritella sp. PE36]
          Length = 182

 Score = 43.9 bits (102), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 33/129 (25%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  +IV +  +IG G    + ++    HAE+ AL EAG+         AT YVTLEPCS 
Sbjct: 47  VGAVIVLNDKIIGEGWNQSIISHDATAHAEIMALREAGKTVENYRLIDATLYVTLEPCS- 105

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
                 CA  ++   ++R+V    D     +G                  S   +  HA 
Sbjct: 106 -----MCAGAMVHSRVKRLVYGAVDLKTGAAG------------------SVFNLVEHAQ 142

Query: 142 LTRQVEKRS 150
           L  Q+E RS
Sbjct: 143 LNHQIEVRS 151


>gi|16804756|ref|NP_466241.1| hypothetical protein lmo2719 [Listeria monocytogenes EGD-e]
 gi|224502871|ref|ZP_03671178.1| hypothetical protein LmonFR_10179 [Listeria monocytogenes FSL
           R2-561]
 gi|255029049|ref|ZP_05301000.1| hypothetical protein LmonL_07681 [Listeria monocytogenes LO28]
 gi|16412219|emb|CAD00932.1| lmo2719 [Listeria monocytogenes EGD-e]
          Length = 156

 Score = 43.9 bits (102), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 21/134 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           +  ++V DG +IGR      T+     HAE+ A+++A +        GA  YVTLEPC  
Sbjct: 25  IGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPC-- 82

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P C+  I+   I +V     DP    +G  +  L          +   +MESE   
Sbjct: 83  ----PMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCEVEAGLMESESSE 138

Query: 137 FLHAYLTRQVEKRS 150
            L ++  +++ KR+
Sbjct: 139 MLKSFF-QELRKRN 151


>gi|293364574|ref|ZP_06611295.1| tRNA-specific adenosine deaminase [Streptococcus oralis ATCC
          35037]
 gi|307702826|ref|ZP_07639774.1| tRNA-specific adenosine deaminase [Streptococcus oralis ATCC
          35037]
 gi|291316832|gb|EFE57264.1| tRNA-specific adenosine deaminase [Streptococcus oralis ATCC
          35037]
 gi|307623506|gb|EFO02495.1| tRNA-specific adenosine deaminase [Streptococcus oralis ATCC
          35037]
          Length = 155

 Score = 43.9 bits (102), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64
          FM  ALR +   + L      + C+IVKDG +IGRG  A         HAE+ A+E A  
Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIENANV 68

Query: 65 -EEAR---GATAYVTLEPC 79
           EE+      T +VT+EPC
Sbjct: 69 SEESWRLLDCTLFVTIEPC 87


>gi|268593242|ref|ZP_06127463.1| tRNA-specific adenosine deaminase [Providencia rettgeri DSM 1131]
 gi|291311137|gb|EFE51590.1| tRNA-specific adenosine deaminase [Providencia rettgeri DSM 1131]
          Length = 160

 Score = 43.9 bits (102), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 21/136 (15%)

Query: 31  VACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++VKD  ++     R +  +    HAE+ AL++AG+E         T YVTLEPC  
Sbjct: 29  VGAVLVKDNHLVASGWNRSIIDHNPTAHAEIMALQQAGQELSNYRLLDTTLYVTLEPC-- 86

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
                 CA  +I   I RVV    D      G  L  + Q G+     +   ++E +   
Sbjct: 87  ----IMCAGAMIHSRISRVVYGAKDFKTGACGSYLDIMGQAGLNHYVDVTGGVLEQQCSS 142

Query: 137 FLHAYLT-RQVEKRSH 151
            L A+   R+ +K+  
Sbjct: 143 MLSAFFKLRRAQKKEQ 158


>gi|86134833|ref|ZP_01053415.1| Deoxycytidylate deaminase [Polaribacter sp. MED152]
 gi|85821696|gb|EAQ42843.1| Deoxycytidylate deaminase [Polaribacter sp. MED152]
          Length = 141

 Score = 43.9 bits (102), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 58/140 (41%), Gaps = 36/140 (25%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGC--------- 52
           +D  ++  AL    W          V  LIVKD ++I  G     T +  C         
Sbjct: 9   YDKAYLRMALE---WGKLSHCKRKQVGALIVKDRMIISDGFNGTPTGFDNCCEDENGATK 65

Query: 53  ---PHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV--CV 104
               HAE  A+     + + A+ AT Y+TL PC+       C++ I + GI+RVV     
Sbjct: 66  WEVLHAEANAILKVASSTQSAKNATLYITLSPCTQ------CSKLIHQAGIKRVVYANAY 119

Query: 105 DDPDVRVSGRGLQWLSQKGI 124
            DP       GL +L + G+
Sbjct: 120 KDPS------GLDFLKKAGV 133


>gi|322376101|ref|ZP_08050611.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          sp. C300]
 gi|321279051|gb|EFX56094.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          sp. C300]
          Length = 155

 Score = 43.9 bits (102), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64
          FM  ALR +   + L      + C+IVKDG +IGRG  A         HAE+ A+E A  
Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIENANV 68

Query: 65 -EEAR---GATAYVTLEPC 79
           EE+      T +VT+EPC
Sbjct: 69 SEESWRLLDCTLFVTIEPC 87


>gi|219849114|ref|YP_002463547.1| bifunctional deaminase-reductase domain-containing protein
           [Chloroflexus aggregans DSM 9485]
 gi|219543373|gb|ACL25111.1| bifunctional deaminase-reductase domain protein [Chloroflexus
           aggregans DSM 9485]
          Length = 289

 Score = 43.9 bits (102), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 79/209 (37%), Gaps = 49/209 (23%)

Query: 147 EKRSHITLKIAVSQD-----NMIGMAGCGSVPITGFISKNQVH------LLRAQSDAILV 195
           E+R  I     VS D     N  G  G  +      IS+N  H      ++RA++DAILV
Sbjct: 38  ERRPAIWTNFVVSHDGRIAFNQPGWNGGNA------ISRNHRHDHWLMEVIRARADAILV 91

Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
           G  T+         R       +P  +   P F   L +   +  L A VI+    D P 
Sbjct: 92  GTATL---------RAARRHRWAPGEVFNWPAFT-QLRAAEERPPLPALVILSASGDVPA 141

Query: 256 LALAFRKKNINIIYC-----DCRDLKKLLTILVGR-----------------GVTSLLVE 293
            A     +++ +I         R     LT LVG                  G+ +LL E
Sbjct: 142 AAALTSPRDLFLITTAQGAEHARSRHPHLTCLVGTDGQLDLTAAMTTLRQQYGIRTLLSE 201

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGE 322
           GG     S +  +L+D + L  S I++G 
Sbjct: 202 GGGRTYGSLLAHQLIDEVFLTISPIIVGN 230


>gi|225387328|ref|ZP_03757092.1| hypothetical protein CLOSTASPAR_01081 [Clostridium asparagiforme
           DSM 15981]
 gi|225046577|gb|EEG56823.1| hypothetical protein CLOSTASPAR_01081 [Clostridium asparagiforme
           DSM 15981]
          Length = 162

 Score = 43.9 bits (102), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 17/129 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
           + D R+M  A+R ++    L      + C+IV +  +I RG    +       HAE+ A+
Sbjct: 2   TTDERYMKEAVRQAKKASALGEV--PIGCVIVYEDKIIARGYNRRMVDQNVLSHAEIIAI 59

Query: 61  EEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A ++         T YVTLEPC      P CA  I++  + +VV+   +P    +G  
Sbjct: 60  RKACKKMGDWRLENCTLYVTLEPC------PMCAGAIVQARVPQVVIGCMNPKAGCAGSV 113

Query: 116 LQWLSQKGI 124
           L  L + G 
Sbjct: 114 LDMLHEDGF 122


>gi|115372516|ref|ZP_01459824.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Stigmatella aurantiaca DW4/3-1]
 gi|310819038|ref|YP_003951396.1| RibD domain-containing protein [Stigmatella aurantiaca DW4/3-1]
 gi|115370478|gb|EAU69405.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Stigmatella aurantiaca DW4/3-1]
 gi|309392110|gb|ADO69569.1| RibD domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 230

 Score = 43.9 bits (102), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 7/110 (6%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF-RKKNINIIYCDCRDL--KKL 278
           I LDP  KL+  S  I    +  V+    +DD    LAF R K ++ ++    DL  KK+
Sbjct: 89  IALDPSGKLTWKSSSIDEEHVITVLTEAVSDD---YLAFLRSKGVSYLFGGKTDLNLKKV 145

Query: 279 LTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           L  L    G+  LL+EGG  +  SF+++ L+D + +  + I  G  G P+
Sbjct: 146 LEKLRKEFGIKKLLLEGGGKINGSFLDADLIDELSVLVAPIADGAMGTPA 195


>gi|219681621|ref|YP_002468007.1| hypothetical protein YfhC [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471309|ref|ZP_05635308.1| hypothetical protein BaphL_01255 [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219624464|gb|ACL30619.1| hypothetical protein YfhC [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 161

 Score = 43.9 bits (102), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 20/163 (12%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIV-IGRGVTAYGGCP--HAEVQALEEA 63
           D  +M  AL+++ ++       P  A L+ K+ I+ IG   +     P  HAE+ AL  A
Sbjct: 6   DKNWMKIALKYA-YYAKEKGEIPIGAILVFKERIIGIGWNSSISKNDPTAHAEIIALRGA 64

Query: 64  GEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV--VCVDDPDVRVSGRGL 116
           G++ +       T YVTL+PC        C   II+  I+R+V     +  D R S + L
Sbjct: 65  GKKIKNYRLLNTTLYVTLQPCIM------CCGAIIQSRIKRLVFGANCNSSDHRFSLKNL 118

Query: 117 QWLSQKGIIVD---RMMESEGKIFLHAYLTRQVEKRSHITLKI 156
               QK   +D    +M+ E    L  +  ++ + + HI  KI
Sbjct: 119 FCNPQKDYKLDIKKNVMQRECSDILINFFQKKRKNKIHICKKI 161


>gi|315222391|ref|ZP_07864296.1| cytidine and deoxycytidylate deaminase zinc-binding region
          [Streptococcus anginosus F0211]
 gi|315188552|gb|EFU22262.1| cytidine and deoxycytidylate deaminase zinc-binding region
          [Streptococcus anginosus F0211]
          Length = 155

 Score = 43.9 bits (102), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
          FM  AL+ +   + L +    + C+IVKDG +IG G  A         HAEV A+EEA  
Sbjct: 11 FMLEALKEA--EIALANDEIPIGCVIVKDGKIIGHGHNAREELQRAVMHAEVMAIEEANA 68

Query: 66 EARG-----ATAYVTLEPC 79
            +       T +VT+EPC
Sbjct: 69 YEKSWRLLDTTLFVTIEPC 87


>gi|289166926|ref|YP_003445193.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          mitis B6]
 gi|288906491|emb|CBJ21321.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          mitis B6]
          Length = 155

 Score = 43.9 bits (102), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64
          FM  ALR +   + L      + C+IVKDG +IGRG  A         HAE+ A+E A  
Sbjct: 11 FMREALREA--DIALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIENANL 68

Query: 65 -EEAR---GATAYVTLEPC 79
           EE+      T +VT+EPC
Sbjct: 69 SEESWRLIDCTLFVTIEPC 87


>gi|322391142|ref|ZP_08064614.1| tRNA-specific adenosine deaminase [Streptococcus peroris ATCC
          700780]
 gi|321145895|gb|EFX41284.1| tRNA-specific adenosine deaminase [Streptococcus peroris ATCC
          700780]
          Length = 166

 Score = 43.9 bits (102), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG- 64
          FM  AL+ +   + L      + C+IVKDG +IGRG  A         HAE+ A+E+A  
Sbjct: 22 FMREALKEA--EIALEHDEIPIGCVIVKDGKIIGRGHNAREELQRAVMHAEIMAIEDANL 79

Query: 65 -EEAR---GATAYVTLEPC 79
           EE+      T +VT+EPC
Sbjct: 80 SEESWRLLDCTLFVTIEPC 98


>gi|104783359|ref|YP_609857.1| cytidine/deoxycytidylate deaminase [Pseudomonas entomophila L48]
 gi|95112346|emb|CAK17073.1| putative cytidine/deoxycytidylate deaminase [Pseudomonas
           entomophila L48]
          Length = 145

 Score = 43.9 bits (102), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 16/113 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           V  ++V+ G VIG+G    +       HAE+ A+  A + A      G+T YVTLEPCS 
Sbjct: 19  VGAVLVQHGQVIGQGFNRPIIDSDPSAHAEMVAIRAAAKSASNYRLPGSTLYVTLEPCSM 78

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
                 CA  I+   + RVV    +P   +     Q+ SQ G +  R+M   G
Sbjct: 79  ------CAGLIVHSRVARVVYGALEPKAGIVQSQGQFFSQ-GFLNHRVMFEGG 124


>gi|326326019|ref|YP_004250828.1| putative deoxycytidylate deaminase [Vibrio nigripulchritudo]
 gi|323669070|emb|CBJ93112.1| Putative deoxycytidylate deaminase [Vibrio nigripulchritudo]
          Length = 148

 Score = 43.9 bits (102), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 53/126 (42%), Gaps = 43/126 (34%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDG--IVIGRGVTAYGGCP---- 53
           +S +D RF   A   S W     S +P+    A L  K G  I IG     Y G P    
Sbjct: 1   MSKWDIRFCKLAKHVSEW-----SKDPNAKVGAVLFSKKGGDITIG-----YNGFPFGVE 50

Query: 54  -----------------HAEVQALEEAGEEARGATAYVTLEP-CSHYGRSPPCAQFIIEC 95
                            HAEV AL  AG  ARGAT +V  +P CS       CA  II+ 
Sbjct: 51  DSVKRLQDKETKLDLVVHAEVNALIAAGSRARGATLFVWGKPICSR------CAGPIIQA 104

Query: 96  GIRRVV 101
           G++RVV
Sbjct: 105 GVKRVV 110


>gi|34557713|ref|NP_907528.1| cytosine deaminase [Wolinella succinogenes DSM 1740]
 gi|34483430|emb|CAE10428.1| CYTOSINE DEAMINASE [Wolinella succinogenes]
          Length = 145

 Score = 43.9 bits (102), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 20/121 (16%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64
           +F+ AAL  ++   GL      +  ++V DG ++GRG    V       HAE+  LE AG
Sbjct: 3   KFLEAALEEAQ--KGLDEGGIPIGSVLVIDGKIVGRGHNQRVQKGSSILHAEMDCLENAG 60

Query: 65  E----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD----PDVRVSGRGL 116
                + R AT Y TL PC        C+  I+  GI ++V+  +     P+  V  RG+
Sbjct: 61  RLSASDYRKATLYSTLSPCDM------CSGAILLYGIPKLVIGENQTFRGPEAYVKSRGV 114

Query: 117 Q 117
           +
Sbjct: 115 E 115


>gi|322388496|ref|ZP_08062098.1| tRNA-specific adenosine deaminase [Streptococcus infantis ATCC
          700779]
 gi|321140614|gb|EFX36117.1| tRNA-specific adenosine deaminase [Streptococcus infantis ATCC
          700779]
          Length = 166

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG- 64
          FM  AL+ +   + L      + C+IVKDG VIGRG  A         HAE+ A+E A  
Sbjct: 22 FMREALKEA--EIALEHDEIPIGCVIVKDGKVIGRGHNAREELQRAVMHAEIMAIENANL 79

Query: 65 -EEAR---GATAYVTLEPC 79
           EE+      T +VT+EPC
Sbjct: 80 SEESWRLLDCTLFVTIEPC 98


>gi|298368702|ref|ZP_06980020.1| tRNA-specific adenosine deaminase [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282705|gb|EFI24192.1| tRNA-specific adenosine deaminase [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 241

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 29/136 (21%)

Query: 31  VACLIVKDGIVIGRGVTAYGGC-------PHAEVQALEEAGE-----EARGATAYVTLEP 78
           V   +VK+G VI     A+  C        HAE+ AL +AG         G   YVTLEP
Sbjct: 114 VGAAVVKNGSVIA---AAHNTCIQSRDVSRHAEISALAQAGAVLGNYRLDGCDVYVTLEP 170

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESE 133
           C+       CA  +I+  + RV+   D+P    +G  +   +  GI     +   +++ E
Sbjct: 171 CAM------CASALIQARVARVIFGADEPKTGAAGSIIDLFAAHGINKHTAVTGGILKKE 224

Query: 134 GKIFLHAYLTRQVEKR 149
            +  L  +     EKR
Sbjct: 225 CRTLLQQFFR---EKR 237


>gi|76799055|ref|ZP_00781248.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          agalactiae 18RS21]
 gi|76585592|gb|EAO62157.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          agalactiae 18RS21]
          Length = 168

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
          FM+ AL+ ++    L      + C+IVKDG +IGRG  A         HAE+ A+  A E
Sbjct: 12 FMTEALKXAK--SSLEKEEIPIGCVIVKDGHIIGRGHNAREEFNKAILHAEIMAINNANE 69

Query: 66 EARG-----ATAYVTLEPC 79
          +         T +VT+EPC
Sbjct: 70 KVGNWRLLDTTLFVTVEPC 88


>gi|258625208|ref|ZP_05720121.1| zinc-binding domain protein [Vibrio mimicus VM603]
 gi|258582498|gb|EEW07334.1| zinc-binding domain protein [Vibrio mimicus VM603]
          Length = 157

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 27/141 (19%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           V  ++V+DG +I  G    +T +    HAE++ + +AG+          T YVTLEPC  
Sbjct: 19  VGAVLVRDGEIIAEGWNCSITHHDATAHAEIEVIRKAGKVLSNYRLLDTTLYVTLEPC-- 76

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-------QWLSQKGIIVDRMMESEG 134
               P CA  ++   ++R+V     PD++    G        Q       +   ++E E 
Sbjct: 77  ----PMCAGALLHSRVKRIVYGA--PDLKAGAAGTVMDLFNSQASYHYATVEKGLLEEEC 130

Query: 135 KIFLHAYLTRQVEKRSHITLK 155
           +  L A+  R   +R  I  K
Sbjct: 131 RAQLQAFFQR---RRKEIKAK 148


>gi|210613778|ref|ZP_03289892.1| hypothetical protein CLONEX_02100 [Clostridium nexile DSM 1787]
 gi|210150987|gb|EEA81995.1| hypothetical protein CLONEX_02100 [Clostridium nexile DSM 1787]
          Length = 158

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 17/123 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
           D ++M  A++ ++    L      + C+IV +  +IGRG            HAE+ A+++
Sbjct: 5   DEKYMKEAIKQAKKAYALGEV--PIGCVIVYEDKIIGRGYNRRTIDKNTIAHAEMMAIKK 62

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++         T YVTLEPC        C+  I++  +++VVV   +P    +G  L 
Sbjct: 63  ASKKMDDWRLEDCTMYVTLEPCQM------CSGAIVQSRMKKVVVGCMNPKAGCAGSILN 116

Query: 118 WLS 120
            L 
Sbjct: 117 LLQ 119


>gi|192360046|ref|YP_001980851.1| cytosine deaminase [Cellvibrio japonicus Ueda107]
 gi|190686211|gb|ACE83889.1| cytosine deaminase [Cellvibrio japonicus Ueda107]
          Length = 146

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 22/145 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---YGGCP-HAEVQALEEAGE 65
           FM AAL  +R   G       +  ++V DG ++GRG       G C  HAE+  LE AG 
Sbjct: 5   FMQAALEEAR--KGRREGGIPIGSVLVIDGRIVGRGHNQRVQKGSCVLHAEMDCLENAGR 62

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-WLS 120
               + R AT Y TL PC        C+  ++  GI +VVV  +     +S +G + ++ 
Sbjct: 63  LKASDYRRATLYSTLSPCDM------CSGTVLLYGIPKVVVGEN-----LSFQGPEAYVR 111

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQ 145
            +G+ +D   ++E K  +  ++ +Q
Sbjct: 112 SRGVELDIRDDAECKQLMQDFIAQQ 136


>gi|52145192|ref|YP_081636.1| cytidine/deoxycytidylate deaminase family protein [Bacillus cereus
           E33L]
 gi|51978661|gb|AAU20211.1| probable cytidine/deoxycytidylate deaminase family protein
           [Bacillus cereus E33L]
          Length = 166

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 23/170 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM  A+  ++    +      +  +IV +G VI        T      HAE+ A++E
Sbjct: 6   DIYFMQLAIEEAKKAEAIQEV--PIGAVIVLNGEVISAAHNLRETEQRSIAHAELLAIDE 63

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  + 
Sbjct: 64  ACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGAGDPKGGCAGTLMN 117

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            L+ +       +VD ++E E    L  +  R++ K+     K+  S +N
Sbjct: 118 LLTDERFNHQCEVVDGVLEEECGTLLTNFF-RELRKKRKAIKKLEKSNEN 166


>gi|194398441|ref|YP_002036741.1| cytosine/adenosine deaminase [Streptococcus pneumoniae G54]
 gi|194358108|gb|ACF56556.1| Cytosine/adenosine deaminase [Streptococcus pneumoniae G54]
          Length = 106

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64
          FM  ALR +   + L      + C+IVKDG +IGRG  A         HAE+ A+E+A  
Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIEDANL 68

Query: 65 -EEAR---GATAYVTLEPC 79
           EE+      T +VT+EPC
Sbjct: 69 SEESWRLLDCTLFVTIEPC 87


>gi|261880389|ref|ZP_06006816.1| cytidine/deoxycytidylate deaminase [Prevotella bergensis DSM 17361]
 gi|270332934|gb|EFA43720.1| cytidine/deoxycytidylate deaminase [Prevotella bergensis DSM 17361]
          Length = 156

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 48/119 (40%), Gaps = 36/119 (30%)

Query: 6   FDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            D R+    LR +R W          V  L+VK+ ++I  G   Y G P           
Sbjct: 13  LDGRY----LRMARIWAENSYCKRRQVGALVVKNKMIISDG---YNGTPSGFENVCEDDN 65

Query: 54  --------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                   HAE  A   L  +   + GAT YVT  PC        CA+ II+ GI+RVV
Sbjct: 66  DLTKPYVLHAEANAITKLARSHNNSEGATLYVTASPCIE------CAKLIIQAGIKRVV 118


>gi|228478058|ref|ZP_04062669.1| tRNA-specific adenosine deaminase [Streptococcus salivarius
          SK126]
 gi|228250238|gb|EEK09491.1| tRNA-specific adenosine deaminase [Streptococcus salivarius
          SK126]
          Length = 172

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
          FMS AL+ +     L      + C+IVKDG V+GRG  A         HAEV A++EA  
Sbjct: 12 FMSEALKEA--EKSLDKAEIPIGCVIVKDGEVVGRGHNAREELNQAIMHAEVMAIQEANR 69

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 70 TVGNWRLLDCTLFVTIEPC 88


>gi|86740605|ref|YP_481005.1| CMP/dCMP deaminase, zinc-binding [Frankia sp. CcI3]
 gi|86567467|gb|ABD11276.1| CMP/dCMP deaminase, zinc-binding [Frankia sp. CcI3]
          Length = 150

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 6/131 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEE-AG 64
           D R+M+ A+  +      T      A ++ ++G  I  G +       HAE  AL + A 
Sbjct: 6   DHRWMTRAIELAHRCPPATGAYSVGAVIVGENGEEIAFGFSREVDDTVHAEESALAKVAP 65

Query: 65  EEARGATA--YVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSG-RGLQWLS 120
           ++ R ATA  Y TLEPCS     P  C Q I+E  I RVV+   +P + V+  +G + L 
Sbjct: 66  DDPRLATATIYSTLEPCSQRMSWPRTCTQLILEAKIPRVVIAWREPSLFVADCQGYELLG 125

Query: 121 QKGIIVDRMME 131
             G+ V  M E
Sbjct: 126 AAGVTVVGMPE 136


>gi|167723579|ref|ZP_02406815.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
          DM98]
          Length = 63

 Score = 43.5 bits (101), Expect = 0.047,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 29/59 (49%)

Query: 4  SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
          S  D   M+ ALR +   +  T  NP V C+I +    +G G     G PHAEV AL E
Sbjct: 5  SDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALRE 63


>gi|308491803|ref|XP_003108092.1| hypothetical protein CRE_10287 [Caenorhabditis remanei]
 gi|308248940|gb|EFO92892.1| hypothetical protein CRE_10287 [Caenorhabditis remanei]
          Length = 171

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 66/155 (42%), Gaps = 24/155 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQALEE 62
           D RF+  A   +     L      V C+ V DG  IG+G       G P  HAE+ A+ E
Sbjct: 9   DRRFLECAFNLA--QEALDGDEVPVGCVFVVDGKEIGKGRNRVNETGDPTRHAEMVAVTE 66

Query: 63  A----GEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD---VRV 111
                GEE     R A  YV+LEPC        C+  + + GIR++V   ++P    VR 
Sbjct: 67  MWKKYGEECKDFLRRAVLYVSLEPCIM------CSSAMYQLGIRKMVYGAENPRFGGVRS 120

Query: 112 SGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQ 145
            G   ++  +  I IV  +        L ++  +Q
Sbjct: 121 VGNAEKYRMEDNIQIVSNVWSDRSVAMLKSFYEKQ 155


>gi|225012149|ref|ZP_03702586.1| CMP/dCMP deaminase zinc-binding [Flavobacteria bacterium MS024-2A]
 gi|225003704|gb|EEG41677.1| CMP/dCMP deaminase zinc-binding [Flavobacteria bacterium MS024-2A]
          Length = 143

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 36/145 (24%)

Query: 9   RFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53
           ++  A L+ ++ W          V  LIVKD ++I  G   Y G P              
Sbjct: 8   KYDKAYLKMAKTWGQLSYCDRKKVGALIVKDRMIISDG---YNGTPSGFENVCEDEEHYT 64

Query: 54  -----HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE  A+     + +  +GAT Y+TL PC        C++ I + GI RVV    
Sbjct: 65  KWYVLHAEANAILKVASSTQSCKGATLYITLSPC------KDCSKLIHQSGIVRVVYAKA 118

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMM 130
             D      GL +L + G+ +D ++
Sbjct: 119 YKDT----TGLDFLKKAGVQLDHVV 139


>gi|186685266|ref|YP_001868462.1| deaminase-reductase domain-containing protein [Nostoc punctiforme
           PCC 73102]
 gi|186467718|gb|ACC83519.1| bifunctional deaminase-reductase domain protein [Nostoc punctiforme
           PCC 73102]
          Length = 226

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 87/193 (45%), Gaps = 22/193 (11%)

Query: 181 NQVHLLRAQS--DAILVGIGTVLAD-------DPELTC--RLNGLQEHSPMRIILDPHFK 229
           +Q HL    S  D +LVG GT+ A+       +PEL    ++ G Q   P+  ++     
Sbjct: 33  DQAHLEYQASFADLVLVGAGTIRAEGGTYTIRNPELLAARKVRG-QSPQPITCVVSGSLD 91

Query: 230 LSLD----SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285
           LSLD    S+ I+  +      +  N D   +L    + I++   D  D  +  +++  R
Sbjct: 92  LSLDLPFLSQDIERWIFTTRTGLKRNSD-ATSLQKLAELIDLGETDL-DWDRAYSLMAER 149

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGYLEK---NFMCV 341
           G+  ++V GG A+  + + +  ++   L    I+ G    PSP+E EG+L +   +   V
Sbjct: 150 GIHKVIVLGGGALTAALLKAGRINDWWLTIWPIIYGGKHAPSPVEGEGFLPQAAPHLQLV 209

Query: 342 RRDYFGSDVCLEY 354
                GS + L Y
Sbjct: 210 ETRQVGSQLFLNY 222


>gi|89890037|ref|ZP_01201548.1| deoxycytidylate deaminase [Flavobacteria bacterium BBFL7]
 gi|89518310|gb|EAS20966.1| deoxycytidylate deaminase [Flavobacteria bacterium BBFL7]
          Length = 141

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 40/149 (26%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNP-SVACLIVKDGIVIGRGVTAYGGCP----------- 53
           +D  ++  A  +++    L+  N   V  LIV+D ++I  G   Y G P           
Sbjct: 9   YDIAYLKMAAEWAK----LSHCNRRQVGALIVRDRMIISDG---YNGTPSGFENFCEDEE 61

Query: 54  --------HAEVQA-LEEAG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  A L+ AG  +   GAT Y+T+ PC        C++ I + GI+RVV 
Sbjct: 62  GYTKWYVLHAEANAILKVAGSTQSCAGATLYITMSPC------KDCSKLIHQSGIKRVVY 115

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
                D      GLQ+L + G+ V+++ +
Sbjct: 116 VEGYKD----DSGLQFLQKAGVEVEQINQ 140


>gi|261492526|ref|ZP_05989079.1| cytosine deaminase [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261496801|ref|ZP_05993175.1| cytosine deaminase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261307548|gb|EEY08877.1| cytosine deaminase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261311685|gb|EEY12835.1| cytosine deaminase [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 174

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 16/115 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           + +S  D  FM  AL  +          P  A L+ K+  +IGRG    +       HAE
Sbjct: 12  LQISEQDIAFMQYALDLADL-AEAKGEIPVGAVLVDKNQQIIGRGWNQTIQLCDPSAHAE 70

Query: 57  VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           +QA+ +AG+          T YVTLEPC      P CA  I+   I+R+V    D
Sbjct: 71  MQAIRQAGQTLGNYRLLDCTLYVTLEPC------PMCAGAILHSRIKRLVFGASD 119


>gi|167752821|ref|ZP_02424948.1| hypothetical protein ALIPUT_01082 [Alistipes putredinis DSM 17216]
 gi|167659890|gb|EDS04020.1| hypothetical protein ALIPUT_01082 [Alistipes putredinis DSM 17216]
          Length = 148

 Score = 43.5 bits (101), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 53/125 (42%), Gaps = 22/125 (17%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D +FM  AL  +     L      +  ++V DG ++GRG     T      HAE+QAL  
Sbjct: 7   DEKFMRLAL--NEAEKALEEQEVPIGAVVVADGRIVGRGHNLVETLADATAHAEMQALTA 64

Query: 63  AGEEARGA-----TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G      T YVT+EPC        CA  I    + RVV   DDP      RG +
Sbjct: 65  AASTVGGKYLSECTLYVTVEPCIM------CAGAIAWSQVGRVVYGADDPK-----RGYR 113

Query: 118 WLSQK 122
             S++
Sbjct: 114 RYSEQ 118


>gi|282881525|ref|ZP_06290195.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella timonensis CRIS 5C-B1]
 gi|281304636|gb|EFA96726.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella timonensis CRIS 5C-B1]
          Length = 140

 Score = 43.5 bits (101), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 47/120 (39%), Gaps = 36/120 (30%)

Query: 5   SFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53
             D R+    LR +R W          V  L+VKD  +I  G   Y G P          
Sbjct: 9   QLDQRY----LRMARIWAENSYCQRRQVGALVVKDQRIISDG---YNGTPSGFENQCEDE 61

Query: 54  ---------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                    HAE  A   L  +   + GAT YVT  PC        CA+ II+ GI+RVV
Sbjct: 62  QGVTHPYVLHAEANAITKLARSSNNSDGATLYVTASPC------IECAKLIIQAGIKRVV 115


>gi|240949642|ref|ZP_04753977.1| tRNA-adenosine deaminase, cytosine/adenosine deaminases
           [Actinobacillus minor NM305]
 gi|240295900|gb|EER46576.1| tRNA-adenosine deaminase, cytosine/adenosine deaminases
           [Actinobacillus minor NM305]
          Length = 150

 Score = 43.5 bits (101), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 15/87 (17%)

Query: 29  PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPC 79
           P  A LI K+G ++G G    +       HAE+QA+  AGE+ +       T YVTLEPC
Sbjct: 18  PVGAVLIDKNGKILGEGWNRSIILSDSTAHAEIQAIRMAGEQLQNYRLLDTTLYVTLEPC 77

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDD 106
           +       CA  I+   I R+V    D
Sbjct: 78  T------MCAGAILHSRIGRLVFGASD 98


>gi|319787039|ref|YP_004146514.1| CMP/dCMP deaminase zinc-binding protein [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465551|gb|ADV27283.1| CMP/dCMP deaminase zinc-binding protein [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 366

 Score = 43.5 bits (101), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 50/118 (42%), Gaps = 15/118 (12%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
           + D R M  AL  +          P  A ++   G VIG G    +  +    HAE+ A+
Sbjct: 212 AIDERHMCHALDLAERAEKEFDEIPVGAVVVSAAGEVIGEGWNRNILDHDPSAHAEIMAM 271

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            +AG+        GAT YVTLEPC+       CA  ++   I RVV    DP     G
Sbjct: 272 RQAGQALSNHRLVGATLYVTLEPCAM------CAMALVHARIARVVYGAADPKTGACG 323


>gi|218261316|ref|ZP_03476184.1| hypothetical protein PRABACTJOHN_01850 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224097|gb|EEC96747.1| hypothetical protein PRABACTJOHN_01850 [Parabacteroides johnsonii
           DSM 18315]
          Length = 144

 Score = 43.5 bits (101), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 58/144 (40%), Gaps = 38/144 (26%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
            D R++  A   + W          V  LIV+D ++I  G   Y G P            
Sbjct: 11  LDKRYLRMA---AVWAENSYCKRRQVGALIVRDQMIISDG---YNGTPSGFENVCEDENN 64

Query: 54  -------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A+ +   +   ++ AT YVT  PC        CA+ II+ GI+RVV  
Sbjct: 65  VTKPYVLHAEANAITKVAASSNSSKDATIYVTSAPCIE------CAKLIIQSGIKRVVY- 117

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD 127
                 RV   G   L + G+I+D
Sbjct: 118 --SEKYRVED-GCNLLRRAGVIID 138


>gi|254361249|ref|ZP_04977392.1| cytosine deaminase [Mannheimia haemolytica PHL213]
 gi|153092745|gb|EDN73788.1| cytosine deaminase [Mannheimia haemolytica PHL213]
          Length = 174

 Score = 43.5 bits (101), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 16/115 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           + +S  D  FM  AL  +          P  A L+ K+  +IGRG    +       HAE
Sbjct: 12  LQISEQDIAFMQYALDLADL-AEAKGEIPVGAVLVDKNQQIIGRGWNQTIQLCDPSAHAE 70

Query: 57  VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           +QA+ +AG+          T YVTLEPC      P CA  I+   I+R+V    D
Sbjct: 71  MQAIRQAGQTLGNYRLLDCTLYVTLEPC------PMCAGAILHSRIKRLVFGASD 119


>gi|254519765|ref|ZP_05131821.1| deoxycytidylate deaminase [Clostridium sp. 7_2_43FAA]
 gi|226913514|gb|EEH98715.1| deoxycytidylate deaminase [Clostridium sp. 7_2_43FAA]
          Length = 164

 Score = 43.5 bits (101), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 68/164 (41%), Gaps = 51/164 (31%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53
           S+D  FM  A+       G  S +PS    AC++  D  ++ +G   Y G P        
Sbjct: 8   SWDEYFMGVAIL-----AGKRSKDPSTQVGACIVDNDNKILSQG---YNGLPRGCSDDEF 59

Query: 54  -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                            HAE+ A L   G    GA  YV L PC+       CA+ II+ 
Sbjct: 60  PWDREGHVLETKYPYVVHAELNAILNSRGTNLYGAKIYVALFPCNE------CAKAIIQA 113

Query: 96  GIRRVVVCVD---DPD-VRVSGRGLQWLSQKGIIVDRMMESEGK 135
           GI+ VV   D   D D V+ S R    LS  G+ + R++E + K
Sbjct: 114 GIKEVVYLSDKYSDSDNVKASKR---LLSASGVKM-RILEPKNK 153


>gi|28868664|ref|NP_791283.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213972056|ref|ZP_03400150.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. tomato T1]
 gi|301385879|ref|ZP_07234297.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302063770|ref|ZP_07255311.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302132520|ref|ZP_07258510.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28851903|gb|AAO54978.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213923189|gb|EEB56790.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. tomato T1]
          Length = 169

 Score = 43.5 bits (101), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 24/117 (20%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP--------HAEVQALEEAGE-----EARGATAYVTLE 77
           V  ++V +G +IGRG      CP        HAE+ A+ +A          G+T YVTLE
Sbjct: 34  VGAVVVHNGEIIGRGYN----CPISGSDPSAHAEMVAIRDAARALGNYRLPGSTLYVTLE 89

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
           PCS       CA  I+   + RVV    +P   +     Q+ SQ G +  R++   G
Sbjct: 90  PCSM------CAGLIVHSRVARVVYGALEPKAGIVQSQGQFFSQ-GFLNHRVLFEGG 139


>gi|83748799|ref|ZP_00945813.1| Possible pyrimidine reductase [Ralstonia solanacearum UW551]
 gi|83724552|gb|EAP71716.1| Possible pyrimidine reductase [Ralstonia solanacearum UW551]
          Length = 256

 Score = 43.5 bits (101), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 65/158 (41%), Gaps = 32/158 (20%)

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEH--------SPMRII------LDPH---FK 229
           RAQSDAI VG  T+ AD+P LT R   L            P+++       LDP+   F+
Sbjct: 52  RAQSDAIFVGAETIRADNPRLTVREPPLIAQRIRRGLPPQPIKVTVTTTGNLDPNAHFFR 111

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD---CRDLKKLLTILVGRG 286
                KI+    L P  I  +       LA       +I  D   C   + +  +L  RG
Sbjct: 112 QGAQEKIV----LCPSAIAADLQSCYAGLAC------VIGLDGPIC--ARGIANVLQRRG 159

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           V  L VEGG  V   F++  + D   L  +   +G  G
Sbjct: 160 VQPLFVEGGTRVLSMFVSEAVFDRFRLAIAPCFVGRAG 197


>gi|218289065|ref|ZP_03493302.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218240890|gb|EED08068.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 156

 Score = 43.5 bits (101), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 52/119 (43%), Gaps = 25/119 (21%)

Query: 1   MPVSSFDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGC 52
           M   + D RFM  AL  +    RW          V  ++V++G ++G G     T   G 
Sbjct: 1   MMEQAADERFMRRALELAEEAARWG------EVPVGAVVVENGRIVGEGFNRRETWRDGT 54

Query: 53  PHAEVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
            HAE+ A+EEA     G        YVTLEPC      P CA  I+   ++R+V    D
Sbjct: 55  AHAEMLAIEEASRRLGGWRLTNCVLYVTLEPC------PMCAGAIVLSRVQRLVYGATD 107


>gi|207739573|ref|YP_002257966.1| hypothetical protein RSIPO_04273 [Ralstonia solanacearum IPO1609]
 gi|206592953|emb|CAQ59859.1| putative 3.5.4.25 protein [Ralstonia solanacearum IPO1609]
          Length = 242

 Score = 43.5 bits (101), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 76/194 (39%), Gaps = 32/194 (16%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
            I L  A S D  +  A    + ++       +   RAQSDAI VG  T+ AD+P LT R
Sbjct: 2   RIHLSAACSIDGYMDAASDARLVLSSPEDLLDIQRERAQSDAIFVGAETIRADNPRLTVR 61

Query: 211 LNGLQEH--------SPMRII------LDPH---FKLSLDSKIIKTALLAPVIIVTENDD 253
              L            P+++       LDP+   F+     KI+    L P  I  +   
Sbjct: 62  EPPLIAQRIRRGLPPQPIKVTVTTTGNLDPNAHFFRQGAQEKIV----LCPSAIAADLQS 117

Query: 254 PVLALAFRKKNINIIYCD---CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
               LA       +I  D   C   + +  +L  RGV  L VEGG  V   F++  + D 
Sbjct: 118 CYAGLAC------VIGLDGPIC--ARGIANVLQRRGVQPLFVEGGTRVLSMFVSEAVFDR 169

Query: 311 IILYRSQIVIGEGG 324
             L  +   +G  G
Sbjct: 170 FRLAIAPCFVGRAG 183


>gi|163753563|ref|ZP_02160686.1| deoxycytidylate deaminase [Kordia algicida OT-1]
 gi|161325777|gb|EDP97103.1| deoxycytidylate deaminase [Kordia algicida OT-1]
          Length = 144

 Score = 43.5 bits (101), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 36/145 (24%)

Query: 8   ARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
           A++  A LR ++ W          V  +IVKD ++I  G   Y G P             
Sbjct: 7   AKYDHAYLRMAKEWGKLSYCKRKQVGAIIVKDRMIISDG---YNGTPSGFENFCEDEEGY 63

Query: 54  ------HAEVQALEEAGEEAR---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                 HAE  A+ +     +   GAT Y+T+ PC        C++ I + GI RVV   
Sbjct: 64  TKWYVLHAEANAILKVAASTQSCVGATLYITMSPCKE------CSKLIHQAGITRVVYV- 116

Query: 105 DDPDVRVSGRGLQWLSQKGIIVDRM 129
              D      G+Q+L + G+ V+ +
Sbjct: 117 ---DAYKDDSGIQFLQRAGVEVEHI 138


>gi|192359003|ref|YP_001981836.1| Cytidine and deoxycytidylate deaminase zinc-binding region
           domain-containing protein [Cellvibrio japonicus Ueda107]
 gi|190685168|gb|ACE82846.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Cellvibrio japonicus Ueda107]
          Length = 201

 Score = 43.5 bits (101), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 15/86 (17%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           V  +IV++GI IG G    +T+     HAE+ AL +A    +     GAT YVTLEPC+ 
Sbjct: 32  VGAVIVREGIAIGEGFNQPITSRDPSAHAEIVALRQAAAHLQNYRLPGATLYVTLEPCTM 91

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDP 107
                 C   ++   I R+V    +P
Sbjct: 92  ------CVGALVHARITRLVYGTAEP 111


>gi|217076231|ref|YP_002333947.1| deoxycytidylate deaminase [Thermosipho africanus TCF52B]
 gi|217036084|gb|ACJ74606.1| deoxycytidylate deaminase [Thermosipho africanus TCF52B]
          Length = 170

 Score = 43.5 bits (101), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 32/58 (55%), Gaps = 9/58 (15%)

Query: 54  HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE  AL +A   G    GAT YVT +PCS       CA+ II  GI++VV   D PD
Sbjct: 94  HAEQNALMQAAKFGISTDGATIYVTHKPCS------VCARLIINAGIKKVVYLNDYPD 145


>gi|54307981|ref|YP_129001.1| putative cytosine/adenosine deaminase [Photobacterium profundum
           SS9]
 gi|46912407|emb|CAG19199.1| Putative cytosine/adenosine deaminase [Photobacterium profundum
           SS9]
          Length = 171

 Score = 43.5 bits (101), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 31/148 (20%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V +G V+G G    +  +    HAE+ AL +AG+  +      AT YVTLEPC  
Sbjct: 32  VGAVVVYNGQVVGEGWNRSIGQHDATAHAEMMALRQAGKVVQNYRLLDATLYVTLEPC-- 89

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS----------QKGIIVDRMME 131
               P CA  ++   I +V+    D     +G  +  LS          Q G++     +
Sbjct: 90  ----PMCAGAMVHSRIGKVIFGASDLKTGAAGSVMNLLSYDEVNHHVDCQSGVL-----D 140

Query: 132 SEGKIFLHAYLT-RQVEKRSHITLKIAV 158
            E +  L A+   R+ EK++    + A 
Sbjct: 141 EECRAQLQAFFKRRRAEKKAEKKARQAA 168


>gi|332994184|gb|AEF04239.1| cytidine/deoxycytidylate deaminase family protein [Alteromonas sp.
           SN2]
          Length = 180

 Score = 43.5 bits (101), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 27/158 (17%)

Query: 29  PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPC 79
           P  AC +V +G +IG G    +T      HAE+ A+  A +  +      AT YVTLEPC
Sbjct: 35  PVGAC-VVHNGELIGEGWNTPITDSDPSAHAEMNAVRMAAKHLQNYRTTDATLYVTLEPC 93

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEG 134
           S       CA  ++   I+RVV    D     +G  +  L+   +     ++  ++  + 
Sbjct: 94  S------MCAGMLVHARIKRVVYGASDAKTGAAGSEMNILNHPSLNHQVDVISGVLADDC 147

Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172
              + A+  R   +R+ I L     Q     +  CGS 
Sbjct: 148 ADKISAFFKR---RRAQIKLDKKAKQ---AALKNCGST 179


>gi|325688867|gb|EGD30875.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK115]
          Length = 156

 Score = 43.5 bits (101), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
          FM  AL+ +   + L      + C++VK+G +IGRG  A         HAE+ A+EEA  
Sbjct: 12 FMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEANR 69

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 70 HENSWRLLDTTLFVTIEPC 88


>gi|313616657|gb|EFR89453.1| tRNA-specific adenosine deaminase [Listeria innocua FSL S4-378]
          Length = 156

 Score = 43.5 bits (101), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 21/133 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           +  ++V DG +IGR      T      HAE+ A+E+A +        GA  YVTLEPC  
Sbjct: 25  IGAVVVLDGEIIGRAHNLRETTQNAVTHAELLAIEDACKHQNSWRLSGAELYVTLEPC-- 82

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P C+  I+   I +V     DP    +G  +  L          +   ++E+E   
Sbjct: 83  ----PMCSGAILLSRIDKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCKVEAGLLEAESSA 138

Query: 137 FLHAYLTRQVEKR 149
            L ++  R++ KR
Sbjct: 139 MLKSFF-RELRKR 150


>gi|152989527|ref|YP_001346733.1| hypothetical protein PSPA7_1349 [Pseudomonas aeruginosa PA7]
 gi|150964685|gb|ABR86710.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 182

 Score = 43.5 bits (101), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 33/125 (26%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           V  ++V++G +IGRG    ++++    HAE+ A+  A  EA      G+T YVTLEPC  
Sbjct: 50  VGAVLVREGEIIGRGFNQPISSHDPSAHAEMVAIRMAAAEAGNYRLPGSTLYVTLEPCGM 109

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
                 C+  ++   I+R+V    +P    SG                +ES G+ F   +
Sbjct: 110 ------CSGLLVHARIQRLVYGTLEPK---SG---------------AVESRGRFFEQEH 145

Query: 142 LTRQV 146
           L  +V
Sbjct: 146 LNHRV 150


>gi|323350632|ref|ZP_08086294.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis VMC66]
 gi|322123314|gb|EFX94999.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis VMC66]
          Length = 156

 Score = 43.5 bits (101), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
          FM  AL+ +   + L      + C++VK+G +IGRG  A         HAE+ A+EEA  
Sbjct: 12 FMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEANR 69

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 70 HENSWRLLDTTLFVTIEPC 88


>gi|149375103|ref|ZP_01892875.1| cytidine/deoxycytidylate deaminase family protein [Marinobacter
           algicola DG893]
 gi|149360467|gb|EDM48919.1| cytidine/deoxycytidylate deaminase family protein [Marinobacter
           algicola DG893]
          Length = 166

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 55/124 (44%), Gaps = 17/124 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGC---PHAEVQALEE 62
           D  +MS AL+ +    G     P V  ++V DG  IG G  A   GC    HAE++AL +
Sbjct: 7   DEAWMSRALQLAG-QAGAAGEVP-VGAVVVLDGKEIGTGFNAPISGCDPTAHAEIRALRD 64

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A          GAT YVTLEPC+       C   I+   I R+V    +P         Q
Sbjct: 65  AAARVGNYRLPGATLYVTLEPCTM------CVGAIVHSRISRLVYGAAEPKAGAVASARQ 118

Query: 118 WLSQ 121
            L++
Sbjct: 119 TLNE 122


>gi|15616866|ref|NP_240079.1| hypothetical protein BU255 [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219682178|ref|YP_002468562.1| tRNA-specific adenosine deaminase monomer (YfhC) [Buchnera
           aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|14286004|sp|P57343|Y255_BUCAI RecName: Full=Uncharacterized protein BU255
 gi|25303863|pir||E84959 hypothetical protein yfhC [imported] - Buchnera sp. (strain APS)
 gi|10038930|dbj|BAB12965.1| hypothetical protein yfhC [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219621911|gb|ACL30067.1| tRNA-specific adenosine deaminase monomer (YfhC) [Buchnera
           aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|311086568|gb|ADP66649.1| tRNA-specific adenosine deaminase monomer (YfhC) [Buchnera
           aphidicola str. TLW03 (Acyrthosiphon pisum)]
 gi|311087149|gb|ADP67229.1| tRNA-specific adenosine deaminase monomer (YfhC) [Buchnera
           aphidicola str. JF99 (Acyrthosiphon pisum)]
 gi|311087683|gb|ADP67762.1| tRNA-specific adenosine deaminase monomer (YfhC) [Buchnera
           aphidicola str. JF98 (Acyrthosiphon pisum)]
          Length = 161

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 20/163 (12%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIV-IGRGVTAYGGCP--HAEVQALEEA 63
           D  +M  AL+++ ++       P  A L+ K+ I+ IG   +     P  HAE+ AL  A
Sbjct: 6   DKNWMKIALKYA-YYAKEKGEIPIGAILVFKERIIGIGWNSSISKNDPTAHAEIIALRGA 64

Query: 64  GEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV--VCVDDPDVRVSGRGL 116
           G++ +       T YVTL+PC        C   II+  I+R+V     +  D R S + L
Sbjct: 65  GKKIKNYRLLNTTLYVTLQPCIM------CCGAIIQSRIKRLVFGANCNSSDHRFSLKNL 118

Query: 117 QWLSQKGIIVD---RMMESEGKIFLHAYLTRQVEKRSHITLKI 156
               QK   +D    +M+ E    L  +  ++ + + HI  KI
Sbjct: 119 FCDPQKDYKLDIKKNVMQRECSDILINFFQKKRKNKIHICKKI 161


>gi|322834117|ref|YP_004214144.1| CMP/dCMP deaminase zinc-binding protein [Rahnella sp. Y9602]
 gi|321169318|gb|ADW75017.1| CMP/dCMP deaminase zinc-binding protein [Rahnella sp. Y9602]
          Length = 180

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V D  VIG G    +  +    HAE+ AL + G   +      AT YVTLEPC  
Sbjct: 34  VGAVLVLDNQVIGEGWNRSIGHHDPTAHAEIMALRQGGNAVQNYRLLNATLYVTLEPCV- 92

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  +I   IRRVV    D     +G  L  L   G+
Sbjct: 93  -----MCAGAMIHSRIRRVVYGAADAKTGAAGSLLDVLRHPGM 130


>gi|71280259|ref|YP_270337.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing
           protein [Colwellia psychrerythraea 34H]
 gi|71145999|gb|AAZ26472.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Colwellia psychrerythraea 34H]
          Length = 182

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 20/126 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V  G +IG G    +       HAE+ A+ +AGE          T YVTLEPC  
Sbjct: 44  VGAVVVHQGKIIGEGFNQSIMLNDPSSHAEMNAIRQAGEFLNNYRLLDCTLYVTLEPC-- 101

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P CA  ++   I R+V    D     +G     ++   +     +   ++E E   
Sbjct: 102 ----PMCAGLLVHSRINRLVYACSDLKTGAAGSAFNLVNNPQLNHQLEVCSNILEEECSQ 157

Query: 137 FLHAYL 142
            L A+ 
Sbjct: 158 LLSAFF 163


>gi|332365640|gb|EGJ43399.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK355]
          Length = 156

 Score = 43.1 bits (100), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
          FM  AL+ +   + L      + C++VK+G +IGRG  A         HAE+ A+EEA  
Sbjct: 12 FMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEANR 69

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 70 HENSWRLLDTTLFVTIEPC 88


>gi|153853556|ref|ZP_01994936.1| hypothetical protein DORLON_00926 [Dorea longicatena DSM 13814]
 gi|149753711|gb|EDM63642.1| hypothetical protein DORLON_00926 [Dorea longicatena DSM 13814]
          Length = 169

 Score = 43.1 bits (100), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 17/128 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           M + S D ++M  A++ ++    +      + C+IV    +IGRG            HAE
Sbjct: 1   MNMQSTDEKYMKEAIKQAKKAYAIGEV--PIGCVIVYQDKIIGRGYNRRTIDNNTLAHAE 58

Query: 57  VQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+++A ++         T YVTLEPC        C+  I++  + RVVV   +P    
Sbjct: 59  LIAIKKASKKMNDWRLEDCTMYVTLEPCQM------CSGAIVQSRMTRVVVGCMNPKAGC 112

Query: 112 SGRGLQWL 119
           +G  L  L
Sbjct: 113 AGSILNLL 120


>gi|332291606|ref|YP_004430215.1| CMP/dCMP deaminase zinc-binding protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169692|gb|AEE18947.1| CMP/dCMP deaminase zinc-binding protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 142

 Score = 43.1 bits (100), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 36/145 (24%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTN-PSVACLIVKDGIVIGRGVTAYGGCP-------- 53
           ++S   ++  A LR +R    L+  N   V  +IVKD ++I  G   Y G P        
Sbjct: 1   MASKQHKYDIAYLRMAREWGKLSYCNRKQVGAIIVKDKMIISDG---YNGTPTGFENVCE 57

Query: 54  -----------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                      HAE  A+     + +   GAT Y+TL PC        C++ + + GI+R
Sbjct: 58  DDENNTKWYVLHAEANAILKVASSTQSCHGATLYITLSPC------KDCSKLVHQAGIKR 111

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGI 124
           VV      D+     G+++L + G+
Sbjct: 112 VVYHNAYKDL----TGVKFLEKAGV 132


>gi|325697330|gb|EGD39216.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK160]
          Length = 165

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
          FM  AL+ +   + L      + C++VK+G +IGRG  A         HAE+ A+EEA  
Sbjct: 21 FMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEANR 78

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 79 HENSWRLLDTTLFVTIEPC 97


>gi|294658696|ref|XP_002770827.1| DEHA2F15488p [Debaryomyces hansenii CBS767]
 gi|202953318|emb|CAR66350.1| DEHA2F15488p [Debaryomyces hansenii]
          Length = 147

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 62/149 (41%), Gaps = 22/149 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D + M  A   ++   G+    P    LI +DG ++GRG      +     H E+  LE 
Sbjct: 5   DKQGMKIAFEEAKKKGGV----PIGGALIHEDGTILGRGHNMRFQSSSATLHGEISTLEN 60

Query: 63  AGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           AG       +  T Y TL PC        C    I  GI+RVV+  +D  V     G   
Sbjct: 61  AGRLKGSIYKKCTMYTTLSPCHM------CTGACIMYGIKRVVLGENDNFV----GGEDL 110

Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVE 147
           L QKGI V  + + + K  +  ++  + E
Sbjct: 111 LKQKGIEVVNLNDKDCKDLMSKFIKERPE 139


>gi|305665639|ref|YP_003861926.1| deoxycytidylate deaminase [Maribacter sp. HTCC2170]
 gi|88710395|gb|EAR02627.1| deoxycytidylate deaminase [Maribacter sp. HTCC2170]
          Length = 147

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 36/139 (25%)

Query: 9   RFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53
           ++  A LR ++ W          V  ++VKD ++I  G   Y G P              
Sbjct: 8   KYDKAYLRMAQEWGKLSFCERKQVGAIVVKDRMIISDG---YNGTPTGFENVCEDEEGYT 64

Query: 54  -----HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE  A+ +   + +   GAT Y+TL PC        C++ I + GI+RVV    
Sbjct: 65  KWYVLHAEANAISKVASSTQSCEGATLYITLSPCRE------CSKLIHQSGIKRVVYKKA 118

Query: 106 DPDVRVSGRGLQWLSQKGI 124
             D    G GL++L + G+
Sbjct: 119 YKD----GSGLEFLEKAGV 133


>gi|301154746|emb|CBW14209.1| tRNA-specific adenosine deaminase [Haemophilus parainfluenzae T3T1]
          Length = 172

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 16/112 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59
           S  D +FM  AL  +     L    P  A L+  +G ++G G    +  +    HAE+ A
Sbjct: 3   SDLDEKFMQHALMLADRAEALGEI-PVGAVLVDDEGNILGEGWNLSIIEHDPTAHAEIVA 61

Query: 60  LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           L  A +  +       T YVTLEPC+       CA  I+   I+R+V    D
Sbjct: 62  LRNAAQNIQNYRLLNTTLYVTLEPCT------MCAGAILHSRIKRLVFGASD 107


>gi|241956270|ref|XP_002420855.1| cytosine aminohydrolase, putative; cytosine deaminase, putative
           [Candida dubliniensis CD36]
 gi|223644198|emb|CAX41008.1| cytosine aminohydrolase, putative [Candida dubliniensis CD36]
          Length = 150

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 24/111 (21%)

Query: 29  PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA----GEEARGATAYVTLEPCS 80
           P  +C+I  DG V+G+G    +  +    H E+ ALE A    G+  +  T Y TL PCS
Sbjct: 26  PIGSCIISSDGTVLGQGHNERIQKHSSILHGEMSALENAGRLPGKTYKDCTIYTTLSPCS 85

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
                  C   I+  G +RVV+          G  + +L  + ++V+  +E
Sbjct: 86  M------CTGAILLYGFKRVVM----------GENVNFLGNEKLLVENGVE 120


>gi|56459694|ref|YP_154975.1| cytosine/adenosine deaminase putative [Idiomarina loihiensis L2TR]
 gi|56178704|gb|AAV81426.1| Cytosine/adenosine deaminase putative [Idiomarina loihiensis L2TR]
          Length = 150

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V D  ++G G    ++      HAE QA+  AG+         AT YVTLEPC+ 
Sbjct: 19  VGAVLVMDDKIVGEGYNQVISLSDPSAHAEAQAIRSAGQAIDNYRLVNATLYVTLEPCAM 78

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  I    ++R+V    DP    +G  ++ ++   +
Sbjct: 79  ------CAGLITHARVKRLVFGATDPRTGATGTAIEVINHASM 115


>gi|329930226|ref|ZP_08283839.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Paenibacillus sp. HGF5]
 gi|328935248|gb|EGG31729.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Paenibacillus sp. HGF5]
          Length = 164

 Score = 43.1 bits (100), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 22/129 (17%)

Query: 31  VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEARGATA------YVTLEPCS 80
           +  +IV+   +IGRG     T Y G  HAE+ A+ EA     GA        YVTLEPC 
Sbjct: 38  IGAVIVRGDEIIGRGYNLRETTYDGTAHAEMVAIREASRHL-GAWRLLDCRLYVTLEPC- 95

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGK 135
                P CA  I++  + +++    DP    +G  +  L +     +  +VD +++ E  
Sbjct: 96  -----PMCAGAIVQSRVPQLIYGTGDPKAGCAGTLMNLLQEPRFNHRTHVVDGVLQEECA 150

Query: 136 IFLHAYLTR 144
             L  +  R
Sbjct: 151 SLLTQFFRR 159


>gi|331019747|gb|EGH99803.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 169

 Score = 43.1 bits (100), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 24/117 (20%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP--------HAEVQALEEAGE-----EARGATAYVTLE 77
           V  ++V +G +IGRG      CP        HAE+ A+ +A          G+T YVTLE
Sbjct: 34  VGAVVVHNGEIIGRGYN----CPISGSDPSAHAEMVAIRDAARALGNYRLPGSTLYVTLE 89

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
           PCS       CA  I+   + RVV    +P   +     Q+ SQ G +  R++   G
Sbjct: 90  PCSM------CAGLIVHSRLARVVYGALEPKAGIVQSQGQFFSQ-GFLNHRVLFEGG 139


>gi|261403958|ref|YP_003240199.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus sp.
           Y412MC10]
 gi|261280421|gb|ACX62392.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus sp.
           Y412MC10]
          Length = 164

 Score = 43.1 bits (100), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 22/129 (17%)

Query: 31  VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEARGATA------YVTLEPCS 80
           +  +IV+   +IGRG     T Y G  HAE+ A+ EA     GA        YVTLEPC 
Sbjct: 38  IGAVIVRGDEIIGRGYNLRETTYDGTAHAEMVAIREASRHL-GAWRLLDCRLYVTLEPC- 95

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGK 135
                P CA  I++  + +++    DP    +G  +  L +     +  +VD +++ E  
Sbjct: 96  -----PMCAGAIVQSRVPQLIYGTGDPKAGCAGTLMNLLQEPRFNHRTHVVDGVLQEECA 150

Query: 136 IFLHAYLTR 144
             L  +  R
Sbjct: 151 SLLTQFFRR 159


>gi|229170871|ref|ZP_04298476.1| hypothetical protein bcere0006_110 [Bacillus cereus MM3]
 gi|228612606|gb|EEK69823.1| hypothetical protein bcere0006_110 [Bacillus cereus MM3]
          Length = 166

 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 23/170 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ AL+E
Sbjct: 6   DIYFMQLAIEEAKKAEAIQEV--PIGAVIVLDGEVISVAHNLRETEQRSIAHAELLALDE 63

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  + 
Sbjct: 64  ACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMN 117

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            L+ +       +V  ++E E    L  +  R++ K+     K+  S +N
Sbjct: 118 LLTDERFNHQCEVVAGVLEEECGTLLTNFF-RELRKKRKAIKKLEKSNEN 166


>gi|22536583|ref|NP_687434.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          agalactiae 2603V/R]
 gi|25010509|ref|NP_734904.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          agalactiae NEM316]
 gi|76788440|ref|YP_329120.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          agalactiae A909]
 gi|77408782|ref|ZP_00785512.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          agalactiae COH1]
 gi|77412323|ref|ZP_00788636.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          agalactiae CJB111]
 gi|77413967|ref|ZP_00790141.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          agalactiae 515]
 gi|22533418|gb|AAM99306.1|AE014209_19 cytidine/deoxycytidylate deaminase family protein [Streptococcus
          agalactiae 2603V/R]
 gi|23094862|emb|CAD46080.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563497|gb|ABA46081.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          agalactiae A909]
 gi|77160003|gb|EAO71140.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          agalactiae 515]
 gi|77161612|gb|EAO72610.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          agalactiae CJB111]
 gi|77172627|gb|EAO75766.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          agalactiae COH1]
 gi|319744400|gb|EFV96759.1| cytidine/deoxycytidylate deaminase [Streptococcus agalactiae ATCC
          13813]
          Length = 168

 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
          FM+ AL+ ++    L      + C+IVKDG +IGRG  A         HAE+ A+  A E
Sbjct: 12 FMTEALKEAK--SSLEKEEIPIGCVIVKDGHIIGRGHNAREEFNKAILHAEIMAINNANE 69

Query: 66 EARG-----ATAYVTLEPC 79
          +         T +VT+EPC
Sbjct: 70 KVGNWRLLDTTLFVTVEPC 88


>gi|324989861|gb|EGC21804.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK353]
 gi|325686683|gb|EGD28709.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK72]
          Length = 156

 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
          FM  AL+ +   + L      + C++VK+G +IGRG  A         HAE+ A+EEA  
Sbjct: 12 FMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEANR 69

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 70 HENSWRLLDTTLFVTIEPC 88


>gi|315284032|ref|ZP_07872011.1| tRNA-specific adenosine deaminase [Listeria marthii FSL S4-120]
 gi|313612324|gb|EFR86487.1| tRNA-specific adenosine deaminase [Listeria marthii FSL S4-120]
          Length = 156

 Score = 43.1 bits (100), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 21/137 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           +  ++V DG +IGR      T+     HAE+ A+++A +        GA  YVTLEPC  
Sbjct: 25  IGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPC-- 82

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P C+  I+   I +V     DP    +G  +  L          +   +ME+E   
Sbjct: 83  ----PMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCEVEAGLMEAESSE 138

Query: 137 FLHAYLTRQVEKRSHIT 153
            L ++  +++ KR+ + 
Sbjct: 139 MLKSFF-QELRKRNKLN 154


>gi|327472530|gb|EGF17961.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK408]
          Length = 156

 Score = 43.1 bits (100), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
          FM  AL+ +   + L      + C++VK+G +IGRG  A         HAE+ A+EEA  
Sbjct: 12 FMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEANR 69

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 70 HENSWRLLDTTLFVTIEPC 88


>gi|16801927|ref|NP_472195.1| hypothetical protein lin2867 [Listeria innocua Clip11262]
 gi|16415402|emb|CAC98093.1| lin2867 [Listeria innocua Clip11262]
          Length = 154

 Score = 43.1 bits (100), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 21/134 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           +  ++V DG +IGR      T      HAE+ A+E+A +        GA  YVTLEPC  
Sbjct: 25  IGAVVVLDGEIIGRAHNLRETTQNAVTHAELLAIEDACKHQNSWRLSGAELYVTLEPC-- 82

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P C+  I+   I +V     DP    +G  +  L          +   ++E+E   
Sbjct: 83  ----PMCSGAILLSRIDKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCKVEAGLLEAESSA 138

Query: 137 FLHAYLTRQVEKRS 150
            L ++  R++ KR 
Sbjct: 139 MLKSFF-RELRKRK 151


>gi|15923548|ref|NP_371082.1| cytosine deaminase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926236|ref|NP_373769.1| hypothetical protein SA0516 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21282242|ref|NP_645330.1| hypothetical protein MW0513 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49485423|ref|YP_042644.1| putative deaminase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|87160687|ref|YP_493246.1| putative deaminase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194321|ref|YP_499113.1| hypothetical protein SAOUHSC_00541 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148267018|ref|YP_001245961.1| CMP/dCMP deaminase, zinc-binding [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393065|ref|YP_001315740.1| CMP/dCMP deaminase zinc-binding [Staphylococcus aureus subsp.
           aureus JH1]
 gi|151220732|ref|YP_001331554.1| hypothetical protein NWMN_0520 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156978887|ref|YP_001441146.1| hypothetical protein SAHV_0556 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161508798|ref|YP_001574457.1| deaminase [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221141004|ref|ZP_03565497.1| deaminase [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|253315668|ref|ZP_04838881.1| putative deaminase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253732567|ref|ZP_04866732.1| deaminase [Staphylococcus aureus subsp. aureus TCH130]
 gi|255005352|ref|ZP_05143953.2| putative deaminase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257795343|ref|ZP_05644322.1| deaminase [Staphylococcus aureus A9781]
 gi|258408970|ref|ZP_05681251.1| deaminase [Staphylococcus aureus A9763]
 gi|258420392|ref|ZP_05683335.1| tRNA-adenosine deaminase [Staphylococcus aureus A9719]
 gi|258422595|ref|ZP_05685501.1| CMP/dCMP deaminase, zinc-binding [Staphylococcus aureus A9635]
 gi|258439312|ref|ZP_05690244.1| cytosine deaminase [Staphylococcus aureus A9299]
 gi|258444052|ref|ZP_05692389.1| tRNA-adenosine deaminase [Staphylococcus aureus A8115]
 gi|258446321|ref|ZP_05694479.1| CMP/dCMP deaminase zinc-binding [Staphylococcus aureus A6300]
 gi|258448414|ref|ZP_05696529.1| deaminase [Staphylococcus aureus A6224]
 gi|258452708|ref|ZP_05700706.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|258453770|ref|ZP_05701744.1| cytosine deaminase [Staphylococcus aureus A5937]
 gi|262049601|ref|ZP_06022470.1| hypothetical protein SAD30_0395 [Staphylococcus aureus D30]
 gi|262052438|ref|ZP_06024638.1| hypothetical protein SA930_0274 [Staphylococcus aureus 930918-3]
 gi|269202181|ref|YP_003281450.1| putative tRNA-specific adenosine deaminase [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282894994|ref|ZP_06303217.1| tRNA-adenosine deaminase [Staphylococcus aureus A8117]
 gi|282924473|ref|ZP_06332145.1| tRNA-adenosine deaminase [Staphylococcus aureus A9765]
 gi|282928896|ref|ZP_06336487.1| tRNA-adenosine deaminase [Staphylococcus aureus A10102]
 gi|294850335|ref|ZP_06791069.1| tRNA-adenosine deaminase [Staphylococcus aureus A9754]
 gi|295406935|ref|ZP_06816738.1| tRNA-adenosine deaminase [Staphylococcus aureus A8819]
 gi|297208728|ref|ZP_06925156.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297246241|ref|ZP_06930090.1| tRNA-adenosine deaminase [Staphylococcus aureus A8796]
 gi|300912818|ref|ZP_07130260.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304381843|ref|ZP_07364490.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|13700450|dbj|BAB41747.1| SA0516 [Staphylococcus aureus subsp. aureus N315]
 gi|14246326|dbj|BAB56720.1| similar to cytosine deaminase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21203678|dbj|BAB94378.1| MW0513 [Staphylococcus aureus subsp. aureus MW2]
 gi|49243866|emb|CAG42291.1| putative deaminase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|87126661|gb|ABD21175.1| putative deaminase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87201879|gb|ABD29689.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740087|gb|ABQ48385.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus JH9]
 gi|149945517|gb|ABR51453.1| CMP/dCMP deaminase zinc-binding [Staphylococcus aureus subsp.
           aureus JH1]
 gi|150373532|dbj|BAF66792.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156721022|dbj|BAF77439.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160367607|gb|ABX28578.1| deaminase [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|253729496|gb|EES98225.1| deaminase [Staphylococcus aureus subsp. aureus TCH130]
 gi|257789315|gb|EEV27655.1| deaminase [Staphylococcus aureus A9781]
 gi|257840321|gb|EEV64784.1| deaminase [Staphylococcus aureus A9763]
 gi|257843582|gb|EEV67988.1| tRNA-adenosine deaminase [Staphylococcus aureus A9719]
 gi|257847167|gb|EEV71175.1| CMP/dCMP deaminase, zinc-binding [Staphylococcus aureus A9635]
 gi|257847649|gb|EEV71648.1| cytosine deaminase [Staphylococcus aureus A9299]
 gi|257850722|gb|EEV74667.1| tRNA-adenosine deaminase [Staphylococcus aureus A8115]
 gi|257854915|gb|EEV77860.1| CMP/dCMP deaminase zinc-binding [Staphylococcus aureus A6300]
 gi|257858283|gb|EEV81170.1| deaminase [Staphylococcus aureus A6224]
 gi|257859581|gb|EEV82431.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|257864026|gb|EEV86780.1| cytosine deaminase [Staphylococcus aureus A5937]
 gi|259159684|gb|EEW44728.1| hypothetical protein SA930_0274 [Staphylococcus aureus 930918-3]
 gi|259162341|gb|EEW46914.1| hypothetical protein SAD30_0395 [Staphylococcus aureus D30]
 gi|262074471|gb|ACY10444.1| putative tRNA-specific adenosine deaminase [Staphylococcus aureus
           subsp. aureus ED98]
 gi|269940131|emb|CBI48507.1| putative deaminase [Staphylococcus aureus subsp. aureus TW20]
 gi|282589504|gb|EFB94593.1| tRNA-adenosine deaminase [Staphylococcus aureus A10102]
 gi|282592884|gb|EFB97888.1| tRNA-adenosine deaminase [Staphylococcus aureus A9765]
 gi|282762676|gb|EFC02813.1| tRNA-adenosine deaminase [Staphylococcus aureus A8117]
 gi|285816259|gb|ADC36746.1| tRNA-specific adenosine-34 deaminase [Staphylococcus aureus
           04-02981]
 gi|294822847|gb|EFG39282.1| tRNA-adenosine deaminase [Staphylococcus aureus A9754]
 gi|294968166|gb|EFG44192.1| tRNA-adenosine deaminase [Staphylococcus aureus A8819]
 gi|296886673|gb|EFH25578.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297176839|gb|EFH36097.1| tRNA-adenosine deaminase [Staphylococcus aureus A8796]
 gi|300885922|gb|EFK81125.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|302332271|gb|ADL22464.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
           aureus JKD6159]
 gi|302750450|gb|ADL64627.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304339629|gb|EFM05576.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|312829054|emb|CBX33896.1| cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128851|gb|EFT84850.1| deaminase [Staphylococcus aureus subsp. aureus CGS03]
 gi|315196629|gb|EFU26976.1| deaminase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320141577|gb|EFW33416.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320141794|gb|EFW33622.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Staphylococcus aureus subsp. aureus MRSA177]
 gi|323439830|gb|EGA97547.1| putative deaminase [Staphylococcus aureus O11]
 gi|323443069|gb|EGB00689.1| putative deaminase [Staphylococcus aureus O46]
 gi|329313279|gb|AEB87692.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329727928|gb|EGG64377.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329731027|gb|EGG67400.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Staphylococcus aureus subsp. aureus 21189]
 gi|329731987|gb|EGG68343.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 156

 Score = 43.1 bits (100), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 55/135 (40%), Gaps = 21/135 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM+ A+  ++    L      +  +I KD  VI R      T      HAE  A+E 
Sbjct: 4   DIYFMTLAIEEAKKAAQLGEV--PIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIER 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +        G T YVTLEPC        CA  I+   I RVV   DDP    SG  + 
Sbjct: 62  AAKVLGSWRLEGCTLYVTLEPCVM------CAGTIVMSRIPRVVYGADDPKGGCSGSLMN 115

Query: 118 WLSQKGI----IVDR 128
            L Q       IVD+
Sbjct: 116 LLQQSNFNHRAIVDK 130


>gi|332365217|gb|EGJ42980.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK1059]
          Length = 179

 Score = 43.1 bits (100), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
           FM  AL+ +   + L      + C++VK+G +IGRG  A         HAE+ A+EEA  
Sbjct: 35  FMREALKEA--EIALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEANR 92

Query: 66  EARG-----ATAYVTLEPC 79
                     T +VT+EPC
Sbjct: 93  HENSWRLLDTTLFVTIEPC 111


>gi|327459989|gb|EGF06328.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK1]
          Length = 156

 Score = 43.1 bits (100), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
          FM  AL+ +   + L      + C++VK+G +IGRG  A         HAE+ A+EEA  
Sbjct: 12 FMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEANR 69

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 70 HENSWRLLDTTLFVTIEPC 88


>gi|210623915|ref|ZP_03294124.1| hypothetical protein CLOHIR_02076 [Clostridium hiranonis DSM 13275]
 gi|210153279|gb|EEA84285.1| hypothetical protein CLOHIR_02076 [Clostridium hiranonis DSM 13275]
          Length = 371

 Score = 43.1 bits (100), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 17/107 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG--VTAY--GGCPHAEVQAL 60
           S D  FM  ALR ++       T   +  +IVKDG +IGRG  +T +      H+E+ A+
Sbjct: 224 SDDEYFMMEALREAKKAYDKEET--PIGAVIVKDGEIIGRGHNLTEHLKDATAHSEILAI 281

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           + A ++ +     G   YVT+EPC        C   I+   IR VV+
Sbjct: 282 KNAAKKLKGWRLFGCKMYVTMEPC------VMCCGAIVNSRIREVVI 322


>gi|217967615|ref|YP_002353121.1| CMP/dCMP deaminase zinc-binding [Dictyoglomus turgidum DSM 6724]
 gi|217336714|gb|ACK42507.1| CMP/dCMP deaminase zinc-binding [Dictyoglomus turgidum DSM 6724]
          Length = 156

 Score = 43.1 bits (100), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 11/85 (12%)

Query: 4  SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQA 59
          SS D  FM  A++ ++    L      V  +IV +G ++GRG     +      HAE+ A
Sbjct: 6  SSIDEYFMHEAIKEAK--KALRKGEVPVGAVIVYNGQIVGRGYNLRESKKNPISHAEMIA 63

Query: 60 LEEAGEEARG-----ATAYVTLEPC 79
          +E+A ++ +G      T YVTLEPC
Sbjct: 64 IEKAAKKLKGWRLCNCTLYVTLEPC 88


>gi|91201071|emb|CAJ74129.1| strongly similar to fungal cytosine deaminase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 145

 Score = 43.1 bits (100), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 14/100 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64
           RFM  A+  ++   GL      +  ++VKDG +IGRG    V       HAE+  L  +G
Sbjct: 3   RFMRTAIEEAKQ--GLLEGGIPIGSVLVKDGEIIGRGHNKRVQENNPIAHAEIDCLVNSG 60

Query: 65  EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
              +  G T Y TL PC        CA  I++  I+++VV
Sbjct: 61  RVGKYSGTTLYSTLMPCY------LCAGAIVQFRIKKIVV 94


>gi|323344020|ref|ZP_08084246.1| cytidine/deoxycytidylate deaminase [Prevotella oralis ATCC 33269]
 gi|323094749|gb|EFZ37324.1| cytidine/deoxycytidylate deaminase [Prevotella oralis ATCC 33269]
          Length = 148

 Score = 43.1 bits (100), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 50/125 (40%), Gaps = 35/125 (28%)

Query: 3   VSSFDARFMSAALRFSR----WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----- 53
           ++S D +     LR+ R    W          V  L+VK+ ++I  G   Y G P     
Sbjct: 1   MTSADEKQQKLDLRYLRMARVWAENSYCKRRQVGALVVKNKMIISDG---YNGTPSGFEN 57

Query: 54  --------------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                         HAE  A   L  +   + G+T YVT  PC        CA+ II+ G
Sbjct: 58  VCEDENSITKPYVLHAEANAITKLARSSNNSDGSTLYVTASPCIE------CAKLIIQAG 111

Query: 97  IRRVV 101
           I+RVV
Sbjct: 112 IKRVV 116


>gi|260893961|ref|YP_003240058.1| CMP/dCMP deaminase zinc-binding protein [Ammonifex degensii KC4]
 gi|260866102|gb|ACX53208.1| CMP/dCMP deaminase zinc-binding protein [Ammonifex degensii KC4]
          Length = 151

 Score = 43.1 bits (100), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 21/135 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEE-----ARGATAYVTLEPCSH 81
           V  + V +G +IGRG     T      HAE+ AL EA ++         T Y TLEPC  
Sbjct: 19  VGAVAVLNGEIIGRGHNLRETLKDATAHAEILALREAAKKIGDWRLEEVTLYTTLEPC-- 76

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG------RGLQWLSQKGIIVDRMMESEGK 135
               P CA  +I+  ++RVV    DP    +G      R  ++  Q  ++   + E  G 
Sbjct: 77  ----PMCAGALIQFRVKRVVFGAFDPKAGAAGSVVDLLRDPRFNHQVEVVGGVLAEESGA 132

Query: 136 IFLHAYLTRQVEKRS 150
           +    +   ++E+R 
Sbjct: 133 LLKRFFQELRMERRD 147


>gi|298693889|gb|ADI97111.1| cytosine deaminase [Staphylococcus aureus subsp. aureus ED133]
          Length = 156

 Score = 43.1 bits (100), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 55/135 (40%), Gaps = 21/135 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM+ A+  ++    L      +  +I KD  VI R      T      HAE  A+E 
Sbjct: 4   DIYFMTLAIEEAKKAAQLGEV--PIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIER 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +        G T YVTLEPC        CA  I+   I RVV   DDP    SG  + 
Sbjct: 62  AAKVLGSWRLEGCTLYVTLEPCVM------CAGTIVMSRIPRVVYGADDPKGGCSGSLMN 115

Query: 118 WLSQKGI----IVDR 128
            L Q       IVD+
Sbjct: 116 LLQQSNFNHRAIVDK 130


>gi|253577340|ref|ZP_04854657.1| CMP/dCMP deaminase, zinc-binding [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251843240|gb|EES71271.1| CMP/dCMP deaminase, zinc-binding [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 165

 Score = 43.1 bits (100), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 20/131 (15%)

Query: 2   PVSSFDARF-MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           P S++   + M+ A+R +R    +      +  +IV+   ++GRG     ++  G  HAE
Sbjct: 12  PASTYPHEYWMAEAIREARKAEAIGEV--PIGAVIVRGDEIVGRGHNLRESSLDGTAHAE 69

Query: 57  VQALEEAGEEARGATA------YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           + A+ EA E   GA        YVTLEPC      P CA  I++C +  V+    DP   
Sbjct: 70  MIAIREASERL-GAWRLLHCRLYVTLEPC------PMCAGAIVQCRVPHVIYGAPDPKAG 122

Query: 111 VSGRGLQWLSQ 121
            +G  +  L +
Sbjct: 123 CAGTLMNLLQE 133


>gi|212695506|ref|ZP_03303634.1| hypothetical protein ANHYDRO_00023 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677506|gb|EEB37113.1| hypothetical protein ANHYDRO_00023 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 180

 Score = 43.1 bits (100), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 25/138 (18%)

Query: 31  VACLIVKDGIVIGRGVT-AYGG---CPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           + C+IVK+G +I R     Y G     HAE+ A+++A +          T YVT+EPCS 
Sbjct: 45  IGCVIVKNGKIIARSHNYTYKGKSALKHAEILAIDKASKYVGDFRLEDCTMYVTMEPCS- 103

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDD-------PDVRVSG--RGLQWL-SQKGIIVDRMME 131
                 CA  II   I R+V+ + D        +  ++G    L +L ++ G++ D+ +E
Sbjct: 104 -----MCAGAIINSRIDRLVIALADVKRGACGSNTNITGDRSQLHFLDAEFGLMKDQSLE 158

Query: 132 SEGKIFLHAYLTRQVEKR 149
                F      R+ EK+
Sbjct: 159 ILQSFFKKLRDRRKKEKK 176


>gi|213403097|ref|XP_002172321.1| diaminohydroxyphosphoribosylamino-pyrimidine deaminase
           [Schizosaccharomyces japonicus yFS275]
 gi|212000368|gb|EEB06028.1| diaminohydroxyphosphoribosylamino-pyrimidine deaminase
           [Schizosaccharomyces japonicus yFS275]
          Length = 147

 Score = 43.1 bits (100), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 14/134 (10%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQAL-----EEAGEEARGATAYVTLEP 78
           T T   V  +IV++G V+  G +    G  HAE  A+      +   +   +  Y T+EP
Sbjct: 19  TDTAFCVGSVIVENGQVVSTGYSRELPGNTHAEESAILKLLQRDPKHDFTRSVIYSTMEP 78

Query: 79  CS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
           CS     + PC Q II     +VV+   +P   V   G++ L   GIIV+  ++ + +  
Sbjct: 79  CSKRLSGNVPCTQHIIANKFHKVVLGCREPTTFVVCEGVRQLQAAGIIVEEDLQFQDECL 138

Query: 138 LHAYLTRQVEKRSH 151
                  +V K+SH
Sbjct: 139 -------RVAKQSH 145


>gi|188996445|ref|YP_001930696.1| CMP/dCMP deaminase zinc-binding [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931512|gb|ACD66142.1| CMP/dCMP deaminase zinc-binding [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 149

 Score = 43.1 bits (100), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 17/111 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
           ++  +F+  A++ +     L      V  +IVKDG +I +     ++      HAE+ A+
Sbjct: 2   NYHKKFIDQAVKEA--EKALKKNEVPVGAVIVKDGKIISKAHNQRISKNNALYHAEILAI 59

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           E++ ++ +      A  Y TLEPC        CA  +++  I++VV C  D
Sbjct: 60  EKSCKKLKTWRLDDAVLYTTLEPCLM------CAGAVMQARIKKVVFCAKD 104


>gi|332883144|gb|EGK03427.1| hypothetical protein HMPREF9456_01494 [Dysgonomonas mossii DSM
           22836]
          Length = 149

 Score = 43.1 bits (100), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 46/118 (38%), Gaps = 34/118 (28%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
            D R+M  A   + W          V  LIVKD ++I  G   Y G P            
Sbjct: 9   LDERYMRMA---AIWAENSYCKRRKVGALIVKDKMIISDG---YNGTPSGFENICEDENN 62

Query: 54  -------HAEVQALEEAG---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                  HAE  A+ +       + GAT YVT  PC        CA+ II+ GI RVV
Sbjct: 63  ETKAYVLHAEANAITKVACSHNSSLGATMYVTTSPC------IECAKLIIQAGITRVV 114


>gi|288800764|ref|ZP_06406221.1| cytidine/deoxycytidylate deaminase family protein [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288332225|gb|EFC70706.1| cytidine/deoxycytidylate deaminase family protein [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 143

 Score = 43.1 bits (100), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 48/119 (40%), Gaps = 36/119 (30%)

Query: 6   FDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            D R+    LR +R W          V  ++VKD ++I  G   Y G P           
Sbjct: 11  LDIRY----LRMARIWAENSYCERRKVGAIVVKDKMIISDG---YNGTPEGFENVCEDSN 63

Query: 54  --------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                   HAE  A   L  +   + GAT YVT  PC        C++ II+ GI+RVV
Sbjct: 64  QITKPYVLHAEANAITKLARSSNNSEGATLYVTASPCIE------CSKLIIQSGIKRVV 116


>gi|332358122|gb|EGJ35954.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK49]
          Length = 156

 Score = 43.1 bits (100), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
          FM  AL+ +   + L      + C++VK+G +IGRG  A         HAE+ A+EEA  
Sbjct: 12 FMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEANR 69

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 70 HENSWRLLDTTLFVTIEPC 88


>gi|239825602|ref|YP_002948226.1| CMP/dCMP deaminase zinc-binding [Geobacillus sp. WCH70]
 gi|239805895|gb|ACS22960.1| CMP/dCMP deaminase zinc-binding [Geobacillus sp. WCH70]
          Length = 160

 Score = 43.1 bits (100), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 20/136 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  +IV+DG +I R      T      HAE+ A+++A +E        AT YVTLEPC+ 
Sbjct: 26  IGAIIVQDGHIIARAHNLRETEQRAIAHAEILAIDKACKEVGSWRLEDATLYVTLEPCAM 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGKI 136
                 CA  I+   I+RVV    DP    +G  +  L +     +  +   ++  E   
Sbjct: 86  ------CAGAIVLARIKRVVFGASDPKGGCAGTLMNLLQEGRFNHQAEVTSGILGEECGQ 139

Query: 137 FLHAYLTRQVEKRSHI 152
            L ++  +  EK+ +I
Sbjct: 140 MLSSFFRKLREKKKNI 155


>gi|103488226|ref|YP_617787.1| CMP/dCMP deaminase, zinc-binding [Sphingopyxis alaskensis RB2256]
 gi|98978303|gb|ABF54454.1| tRNA-adenosine deaminase [Sphingopyxis alaskensis RB2256]
          Length = 155

 Score = 43.1 bits (100), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 52/127 (40%), Gaps = 20/127 (15%)

Query: 31  VACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAG-----EEARGATAYVTLEPCSH 81
           V  +IVKDG VI  G      ++    HAE+ A+  A      E   G   YVTLEPC+ 
Sbjct: 28  VGAVIVKDGAVIAEGHNRPRESHDPTAHAEIVAMRMAAAKLGNERLDGCDLYVTLEPCAM 87

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
                 CA  I    I R+    DDP       G +  +Q  +     I D + ESE   
Sbjct: 88  ------CAGAIAHARIARLYYGADDPKGGAVVHGPRLFAQPTVHHRPEIYDGIGESEAAG 141

Query: 137 FLHAYLT 143
            L A+  
Sbjct: 142 LLRAFFA 148


>gi|291521262|emb|CBK79555.1| Cytosine/adenosine deaminases [Coprococcus catus GD/7]
          Length = 160

 Score = 43.1 bits (100), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 15/101 (14%)

Query: 31  VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           + C+IV +G +I RG            HAE+ A+ +A +        G T Y+TLEPC  
Sbjct: 26  IGCVIVYEGKIIARGYNKRNKEKNTLSHAEMNAIRKASKYLGDWRLEGCTMYITLEPC-- 83

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
               P CA  I++  + RVV+   +     +G  L  L ++
Sbjct: 84  ----PMCAGAIVQARVDRVVIGSMNAKAGCAGSVLNVLQER 120


>gi|327463521|gb|EGF09840.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis
          SK1057]
 gi|327467872|gb|EGF13362.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK330]
          Length = 156

 Score = 43.1 bits (100), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
          FM  AL+ +   + L      + C++VK+G +IGRG  A         HAE+ A+EEA  
Sbjct: 12 FMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEANR 69

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 70 HENSWRLLDTTLFVTIEPC 88


>gi|322374121|ref|ZP_08048655.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          sp. C150]
 gi|321277087|gb|EFX54158.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          sp. C150]
          Length = 172

 Score = 43.1 bits (100), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
          FMS AL+ +     L      + C+IVKDG ++GRG  A         HAEV A++EA  
Sbjct: 12 FMSEALKEA--QKSLDKAEIPIGCVIVKDGEIVGRGHNAREELNQAIMHAEVMAIQEANR 69

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 70 TIGNWRLLDCTLFVTIEPC 88


>gi|212540050|ref|XP_002150180.1| cytosine deaminase, putative [Penicillium marneffei ATCC 18224]
 gi|210067479|gb|EEA21571.1| cytosine deaminase, putative [Penicillium marneffei ATCC 18224]
          Length = 148

 Score = 43.1 bits (100), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 47/106 (44%), Gaps = 18/106 (16%)

Query: 29  PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG----EEARGATAYVTLEPCS 80
           P  ACL+ KDG ++GRG            H E+ ALE +G        GAT Y TL PC 
Sbjct: 24  PIGACLVSKDGKILGRGHNMRFQKGSATLHGEISALENSGRLPASAYEGATMYTTLSPCD 83

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
                  C    I   ++RVVV  +   +     G Q+L  +GI V
Sbjct: 84  M------CTGACILYKVKRVVVGENKTFL----GGEQYLQSRGIEV 119


>gi|312959178|ref|ZP_07773697.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           fluorescens WH6]
 gi|311286948|gb|EFQ65510.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           fluorescens WH6]
          Length = 165

 Score = 43.1 bits (100), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 63/155 (40%), Gaps = 43/155 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------HAE 56
           S D  FM  AL  +    G       V  ++V+DG +IGRG      CP        HAE
Sbjct: 13  SRDQHFMREALALAAQ--GAVLGEVPVGAVLVQDGEIIGRGFN----CPISGNDPSAHAE 66

Query: 57  V-----QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +      A   +     G+T YVTLEPCS       CA  I+   I RVV    +P    
Sbjct: 67  MVAIRAAARAISNYRLVGSTLYVTLEPCSM------CAGLIVHSRIARVVYGALEP---- 116

Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQV 146
                    + GI+     +S+G+ F   +L  +V
Sbjct: 117 ---------KAGIV-----QSQGQFFTQGFLNHRV 137


>gi|288906283|ref|YP_003431505.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          gallolyticus UCN34]
 gi|306832338|ref|ZP_07465492.1| tRNA-specific adenosine deaminase [Streptococcus gallolyticus
          subsp. gallolyticus TX20005]
 gi|325979296|ref|YP_004289012.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288733009|emb|CBI14590.1| putative cytidine/deoxycytidylate deaminase family protein
          [Streptococcus gallolyticus UCN34]
 gi|304425777|gb|EFM28895.1| tRNA-specific adenosine deaminase [Streptococcus gallolyticus
          subsp. gallolyticus TX20005]
 gi|325179224|emb|CBZ49268.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 168

 Score = 43.1 bits (100), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
          FM  AL+ ++    L      + C+IVK+G++IGRG  A         HAE+ A+++A E
Sbjct: 12 FMREALKEAQ--KSLAKEEIPIGCVIVKNGVIIGRGHNAREERQKAILHAEIMAIDDANE 69

Query: 66 EARG-----ATAYVTLEPC 79
                   +T +VT+EPC
Sbjct: 70 NEGSWRLLDSTLFVTIEPC 88


>gi|251772814|gb|EES53374.1| putative zinc-binding cytidine/deoxycytidylate deaminase
           [Leptospirillum ferrodiazotrophum]
          Length = 158

 Score = 43.1 bits (100), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 18/121 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57
           P    D  FM+ AL  +R   G+    P V  ++V  G ++G GV     ++    HAE+
Sbjct: 7   PNHQADVYFMNKALNLARN--GIVDDVP-VGAIVVVGGEIVGEGVNQGRASHDPTAHAEI 63

Query: 58  QALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL  A           +T YVTLEPC        C   ++E  I R+V    DP   V+
Sbjct: 64  IALRRAAARLENYRLPLSTLYVTLEPCLM------CLGAMMEGRIHRLVFGARDPKRGVA 117

Query: 113 G 113
           G
Sbjct: 118 G 118


>gi|125718966|ref|YP_001036099.1| hypothetical protein SSA_2184 [Streptococcus sanguinis SK36]
 gi|125498883|gb|ABN45549.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
          Length = 156

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
          FM  AL+ +   + L      + C++VK+G +IGRG  A         HAE+ A+EEA  
Sbjct: 12 FMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEANR 69

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 70 HENSWRLLDTTLFVTIEPC 88


>gi|88801568|ref|ZP_01117096.1| deoxycytidylate deaminase [Polaribacter irgensii 23-P]
 gi|88782226|gb|EAR13403.1| deoxycytidylate deaminase [Polaribacter irgensii 23-P]
          Length = 141

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 32/138 (23%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGC--------- 52
           +D  ++  AL    W          V  LIVK+ ++I  G     T +  C         
Sbjct: 9   YDRAYLKMALE---WGKLSHCKRKQVGALIVKNRMIISDGFNGTPTGFENCCEDSSGNTK 65

Query: 53  ---PHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               HAE  A+     + + A GAT Y+TL PC+       C++ I + GI+RVV     
Sbjct: 66  WEVLHAEANAILKVASSTQSAEGATLYITLSPCTQ------CSKLIHQAGIKRVVYANAY 119

Query: 107 PDVRVSGRGLQWLSQKGI 124
            D      GL++L + G+
Sbjct: 120 KD----DAGLKFLEKAGV 133


>gi|119468555|ref|ZP_01611646.1| tRNA-specific adenosine deaminase [Alteromonadales bacterium TW-7]
 gi|119448063|gb|EAW29328.1| tRNA-specific adenosine deaminase [Alteromonadales bacterium TW-7]
          Length = 165

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEE 62
           +A +M  AL +++    L      V  ++VKD  +I     R +T      HAE+ A+ E
Sbjct: 7   NAYWMEQALLYAKQAEQLNEI--PVGAVLVKDNQLIASGYNRSITDNDPSAHAEMIAVRE 64

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AG+          T YVTLEPCS       CA  ++   I+R+V    D     +G  + 
Sbjct: 65  AGKALNNYRLIDCTLYVTLEPCSM------CAGLLVHSRIKRLVFGAPDAKTGSAGSIMN 118

Query: 118 WLSQ 121
            L +
Sbjct: 119 LLQE 122


>gi|269126069|ref|YP_003299439.1| CMP/dCMP deaminase zinc-binding protein [Thermomonospora curvata
           DSM 43183]
 gi|268311027|gb|ACY97401.1| CMP/dCMP deaminase zinc-binding protein [Thermomonospora curvata
           DSM 43183]
          Length = 151

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 71  TAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           T Y +LEPC     R  PCA+ I E GI RVV    +P + V G G Q L   GI V R+
Sbjct: 76  TIYSSLEPCGRRLSRPRPCARLIAEAGIGRVVYAWREPVLFVEGGGEQVLRAAGIEVVRI 135

Query: 130 ME 131
            +
Sbjct: 136 AD 137


>gi|226946009|ref|YP_002801082.1| Cytidine/deoxycytidylate deaminase-like protein [Azotobacter
           vinelandii DJ]
 gi|226720936|gb|ACO80107.1| Cytidine/deoxycytidylate deaminase-like protein [Azotobacter
           vinelandii DJ]
          Length = 158

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 66/156 (42%), Gaps = 30/156 (19%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------HAE 56
           S D  FM  AL  +    GL      V  ++V+ G ++GRG      CP        HAE
Sbjct: 10  SQDEHFMREALVLAAEGAGLGEV--PVGAVLVRGGEIVGRGFN----CPISRRDPSAHAE 63

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+  A          G+T YVTLEPCS       CA  I+   + RVV    +P   V
Sbjct: 64  MVAIRAAAAALDNYRLPGSTLYVTLEPCSM------CAGLIVHARVARVVFGASEPRAGV 117

Query: 112 S-GRG----LQWLSQKGIIVDRMMESEGKIFLHAYL 142
           +  RG      +L+ + +I   ++  E    L A+ 
Sbjct: 118 AVSRGDFFAQDFLNHRVLIEGGLLAEECGAILKAFF 153


>gi|332882408|ref|ZP_08450036.1| ComE operon protein 2 family protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332679792|gb|EGJ52761.1| ComE operon protein 2 family protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 149

 Score = 42.7 bits (99), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 49/119 (41%), Gaps = 36/119 (30%)

Query: 5   SFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53
             D R+    LR +R W          V  LIVKD ++I  G   Y G P          
Sbjct: 10  ELDLRY----LRMARIWAENSYCERRKVGALIVKDKMIISDG---YNGTPAGFENVCEDE 62

Query: 54  ---------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                    HAE  A+ +   +G  + GAT YVT  PC        C++ II+ GI+RV
Sbjct: 63  NHLTKPYVLHAEANAITKIARSGNNSEGATLYVTDAPCIE------CSKLIIQSGIKRV 115


>gi|325183042|emb|CCA17497.1| riboflavinspecific deaminase/GTP cyclohydrolase II putative [Albugo
           laibachii Nc14]
          Length = 219

 Score = 42.7 bits (99), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 71/179 (39%), Gaps = 52/179 (29%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           K   ITL  A S D  I         ++G  SK   H+LR     IL+GIGT+++D+P L
Sbjct: 31  KYPMITLTYAQSIDGCIAAKKGSPTILSGSASKRMTHVLRTLHQGILIGIGTLISDNPSL 90

Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN- 266
           T +                         ++ T+              ++AL  RKK +  
Sbjct: 91  TSQ------------------------DLVSTS--------------IVALQSRKKALEQ 112

Query: 267 ----IIYCD--CRD-------LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
               II C+  C         L +   +L   G  S++VEGGA +  S +  + + S++
Sbjct: 113 AGAVIIECESICTSEGAQHVHLSRAFELLHNYGFESIMVEGGAGIITSCLREQTIFSLV 171


>gi|254499275|ref|ZP_05111951.1| deaminase [Legionella drancourtii LLAP12]
 gi|254351519|gb|EET10378.1| deaminase [Legionella drancourtii LLAP12]
          Length = 143

 Score = 42.7 bits (99), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 20/128 (15%)

Query: 29  PSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEARG-----ATAYVTLEPC 79
           P  A L+  +G ++G    A    +    HAEV+ + +A ++ +       T YVTLEPC
Sbjct: 18  PVGAVLVSNEGELLGASRNAVQNSHDPSDHAEVRVIRQAAQQLKNHRLLDTTLYVTLEPC 77

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEG 134
                 P CA  I+   I+RVV    D     +G          L+ K  I + +M+SE 
Sbjct: 78  ------PMCAGLIVHARIKRVVFATRDFKAGAAGSVYNLLQGYPLNHKVQIDEGIMQSEC 131

Query: 135 KIFLHAYL 142
            + L  + 
Sbjct: 132 ALLLSDFF 139


>gi|88192205|pdb|2B3J|A Chain A, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
           Deaminase, Tada, In Complex With Rna
 gi|88192206|pdb|2B3J|B Chain B, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
           Deaminase, Tada, In Complex With Rna
 gi|88192207|pdb|2B3J|C Chain C, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
           Deaminase, Tada, In Complex With Rna
 gi|88192208|pdb|2B3J|D Chain D, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
           Deaminase, Tada, In Complex With Rna
          Length = 159

 Score = 42.7 bits (99), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 55/135 (40%), Gaps = 21/135 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM+ A+  ++    L      +  +I KD  VI R      T      HAE  A+E 
Sbjct: 7   DIYFMTLAIEEAKKAAQLGEV--PIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIER 64

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +        G T YVTLEPC        CA  I+   I RVV   DDP    SG  + 
Sbjct: 65  AAKVLGSWRLEGCTLYVTLEPCVM------CAGTIVMSRIPRVVYGADDPKGGCSGSLMN 118

Query: 118 WLSQKGI----IVDR 128
            L Q       IVD+
Sbjct: 119 LLQQSNFNHRAIVDK 133


>gi|323435986|ref|ZP_01049493.2| dCMP deaminase [Dokdonia donghaensis MED134]
 gi|321496301|gb|EAQ39465.2| dCMP deaminase [Dokdonia donghaensis MED134]
          Length = 142

 Score = 42.7 bits (99), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 36/139 (25%)

Query: 9   RFMSAALRFSRWHVGLTSTN-PSVACLIVKDGIVIGRGVTAYGGCP-------------- 53
           ++  A LR +R    L+  N   V  +IVKD ++I  G   Y G P              
Sbjct: 7   KYDIAYLRMAREWGKLSYCNRKQVGAIIVKDKMIISDG---YNGTPTGFENVCEDEENNT 63

Query: 54  -----HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE  A+     + +   GAT Y+TL PC        C++ + + GI+RVV    
Sbjct: 64  KWYVLHAEANAILKVASSTQSCHGATLYITLSPC------KDCSKLVHQAGIKRVVYHSA 117

Query: 106 DPDVRVSGRGLQWLSQKGI 124
             D+     G+++L + G+
Sbjct: 118 YKDL----TGVKFLEKAGV 132


>gi|196251180|ref|ZP_03149855.1| CMP/dCMP deaminase zinc-binding [Geobacillus sp. G11MC16]
 gi|196209306|gb|EDY04090.1| CMP/dCMP deaminase zinc-binding [Geobacillus sp. G11MC16]
          Length = 169

 Score = 42.7 bits (99), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 20/136 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  +IV+DG VI R      T      HAE+ A++EA +         AT YVTLEPC+ 
Sbjct: 35  IGAVIVQDGRVIARAHNLRETEQRAIAHAEILAIDEACQATGSWRLERATLYVTLEPCAM 94

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGKI 136
                 CA  I+   I RVV    DP    +G  +  L +     +  +   ++ SE   
Sbjct: 95  ------CAGAIVLSRIERVVFGASDPKGGCAGTLMNLLQESRFNHQADVTSGVLASECGS 148

Query: 137 FLHAYLTRQVEKRSHI 152
            L  +  R  E++ ++
Sbjct: 149 LLSDFFRRLRERKKNV 164


>gi|193213141|ref|YP_001999094.1| CMP/dCMP deaminase zinc-binding [Chlorobaculum parvum NCIB 8327]
 gi|193086618|gb|ACF11894.1| CMP/dCMP deaminase zinc-binding [Chlorobaculum parvum NCIB 8327]
          Length = 152

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 55/128 (42%), Gaps = 20/128 (15%)

Query: 29  PSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
           P  A ++  +G+VIGRG     T      HAE+ AL  A      +   G T  VTLEPC
Sbjct: 25  PVGAVVLDPNGLVIGRGYNQVETLSDATAHAEMIALTSAMATLDNKYLEGCTLAVTLEPC 84

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG-----RGLQWLSQKGIIVDRMMESEG 134
                 P CA  I+   I RVV    DP +  SG      G   L+ +  +   +ME + 
Sbjct: 85  ------PMCAGAIVLSKISRVVFGAWDPKMGASGTVLNVTGCSALNHQPEVYGGIMEHKA 138

Query: 135 KIFLHAYL 142
           +  L  + 
Sbjct: 139 ESLLQDFF 146


>gi|87121678|ref|ZP_01077565.1| cytidine/deoxycytidylate deaminase family protein [Marinomonas sp.
           MED121]
 gi|86162929|gb|EAQ64207.1| cytidine/deoxycytidylate deaminase family protein [Marinomonas sp.
           MED121]
          Length = 162

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 15/100 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V D  +IG G    ++      HAE+QA+ +A +         AT YVTLEPCS 
Sbjct: 19  VGAILVLDNEIIGEGYNSPISTCDPTAHAEIQAIRDACKNVANYRLPKATLYVTLEPCSM 78

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                 CA  I+   I RVV    +P   V     Q+  Q
Sbjct: 79  ------CAGAIVHARIARVVYAATEPKSGVVESQNQFFEQ 112


>gi|20428822|emb|CAD21697.1| hypothetical protein [Azoarcus evansii]
          Length = 154

 Score = 42.7 bits (99), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 21/127 (16%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  +M  AL  +R   G     P V  ++V DG ++GRG    +  +    HAEV AL +
Sbjct: 3   DEDYMRVALEQAR-EAGSCDEVP-VGAVVVLDGEIVGRGFNQPIGRHDPTAHAEVMALRD 60

Query: 63  AGEEAR-------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           A   AR       G   YVTLEPC+       C+  I+   I RVV    DP   V+G  
Sbjct: 61  AA--ARLGNYRLPGCELYVTLEPCAM------CSGAIMHSRIARVVFGARDPKTGVAGSV 112

Query: 116 LQWLSQK 122
           +   ++ 
Sbjct: 113 IDLFAES 119


>gi|75911133|ref|YP_325429.1| cytidine/deoxycytidylate deaminase [Anabaena variabilis ATCC 29413]
 gi|75704858|gb|ABA24534.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Anabaena
           variabilis ATCC 29413]
          Length = 143

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 12/78 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE--EARGATAYVTLEPCSHYGR 84
           +  ++VKDG ++GRG    V       HAE+  L  AG     RG T Y TL PC     
Sbjct: 23  IGSVLVKDGKILGRGHNKRVQDRDPVTHAEIDCLRNAGRIGSYRGTTLYSTLMPCY---- 78

Query: 85  SPPCAQFIIECGIRRVVV 102
              CA  +++ GI++V+V
Sbjct: 79  --LCAGAVVQFGIKKVIV 94


>gi|153956292|ref|YP_001397057.1| deaminase [Clostridium kluyveri DSM 555]
 gi|219856609|ref|YP_002473731.1| hypothetical protein CKR_3266 [Clostridium kluyveri NBRC 12016]
 gi|146349150|gb|EDK35686.1| Predicted deaminase [Clostridium kluyveri DSM 555]
 gi|219570333|dbj|BAH08317.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 141

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 7/53 (13%)

Query: 54  HAEVQALEEAGEEAR-GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           HAEV  L E   + R  +T YVT  PC      P C + II CG++RV+ C D
Sbjct: 72  HAEVNCLLEVSPDDRENSTLYVTHMPC------PECQKLIINCGVKRVIYCED 118


>gi|167771010|ref|ZP_02443063.1| hypothetical protein ANACOL_02364 [Anaerotruncus colihominis DSM
           17241]
 gi|167666680|gb|EDS10810.1| hypothetical protein ANACOL_02364 [Anaerotruncus colihominis DSM
           17241]
          Length = 151

 Score = 42.7 bits (99), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 47/110 (42%), Gaps = 17/110 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  FM  ALR +            V  ++V DG ++G G     T      HAE++A++ 
Sbjct: 3   DNDFMGEALRLA--GCAAERGEVPVGAVVVCDGQIVGTGFNRRETGKNALAHAELEAIDA 60

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           A     G        YVTLEPC      P CA  II   IRR+V    DP
Sbjct: 61  ACRRLGGWRLHRCELYVTLEPC------PMCAGAIINARIRRLVFGARDP 104


>gi|38677840|emb|CAE82258.1| putative cytosine deaminase [Candida albicans]
          Length = 150

 Score = 42.7 bits (99), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 24/111 (21%)

Query: 29  PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA----GEEARGATAYVTLEPCS 80
           P  +C+I  DG V+G+G    +  +    H E+ ALE A    G+  +  T Y TL PCS
Sbjct: 26  PIGSCIISSDGTVLGQGHNERIQKHSAILHGEMSALENAGRLPGKTYKDCTIYTTLSPCS 85

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
                  C   I+  G +RVV+          G  + +L  + ++++  +E
Sbjct: 86  M------CTGAILLYGFKRVVM----------GENVNFLGNEKLLIENGVE 120


>gi|269838886|ref|YP_001949988.2| deoxycytidylate deaminase domain like protein [Ralstonia phage
           RSL1]
 gi|239793682|dbj|BAG41558.2| deoxycytidylate deaminase domain like protein [Ralstonia phage
           RSL1]
          Length = 145

 Score = 42.7 bits (99), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 37/82 (45%), Gaps = 13/82 (15%)

Query: 51  GCPHAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           G  HAEV A   L  AG    GAT Y+TL PC       PCA  I   GI RVV      
Sbjct: 74  GVTHAEVNAIGKLAAAGISCAGATLYLTLSPCV------PCANLIQRSGIERVVYETQYR 127

Query: 108 DVRVSGRGLQWLSQKGIIVDRM 129
           DV     G+  L+  GI V + 
Sbjct: 128 DV----EGINLLTGCGIAVQKF 145


>gi|315659096|ref|ZP_07911961.1| zinc-binding domain protein [Staphylococcus lugdunensis M23590]
 gi|315495820|gb|EFU84150.1| zinc-binding domain protein [Staphylococcus lugdunensis M23590]
          Length = 158

 Score = 42.7 bits (99), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 56/133 (42%), Gaps = 20/133 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           +  +IVKD  VI R      T+     HAE  A+E A E          T YVTLEPC  
Sbjct: 26  IGAVIVKDTQVIARAHNLRETSQQPTAHAEHIAIERASEVLGSWRLEACTLYVTLEPCVM 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGKI 136
                 CA  I+   I RVV    DP    SG  +  L Q     + I+   ++E E   
Sbjct: 86  ------CAGAIVMSRIPRVVYGAIDPKGGCSGSLMNLLEQPQFNHQAIVKTGVLEQECGQ 139

Query: 137 FLHAYLTRQVEKR 149
            L ++  R  EK+
Sbjct: 140 LLRSFFQRLREKK 152


>gi|289551636|ref|YP_003472540.1| tRNA-specific adenosine-34 deaminase [Staphylococcus lugdunensis
           HKU09-01]
 gi|289181167|gb|ADC88412.1| tRNA-specific adenosine-34 deaminase [Staphylococcus lugdunensis
           HKU09-01]
          Length = 158

 Score = 42.7 bits (99), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 56/133 (42%), Gaps = 20/133 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           +  +IVKD  VI R      T+     HAE  A+E A E          T YVTLEPC  
Sbjct: 26  IGAVIVKDTQVIARAHNLRETSQQPTAHAEHIAIERASEVLGSWRLEACTLYVTLEPCVM 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGKI 136
                 CA  I+   I RVV    DP    SG  +  L Q     + I+   ++E E   
Sbjct: 86  ------CAGAIVMSRIPRVVYGAIDPKGGCSGSLMNLLEQPQLNHQAIVKTGVLEQECGQ 139

Query: 137 FLHAYLTRQVEKR 149
            L ++  R  EK+
Sbjct: 140 LLRSFFQRLREKK 152


>gi|284023569|ref|ZP_06377967.1| putative tRNA-specific adenosine deaminase [Staphylococcus aureus
           subsp. aureus 132]
          Length = 156

 Score = 42.7 bits (99), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 55/135 (40%), Gaps = 21/135 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM+ A+  ++    L      +  +I KD  VI R      T      HAE  A+E 
Sbjct: 4   DIFFMTLAIEEAKKAAQLGEV--PIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIER 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +        G T YVTLEPC        CA  I+   I RVV   DDP    SG  + 
Sbjct: 62  AAKVLGSWRLEGCTLYVTLEPCVM------CAGTIVMSRIPRVVYGADDPKGGCSGSLMN 115

Query: 118 WLSQKGI----IVDR 128
            L Q       IVD+
Sbjct: 116 LLQQSNFNHRAIVDK 130


>gi|289644955|ref|ZP_06476996.1| CMP/dCMP deaminase zinc-binding [Frankia symbiont of Datisca
           glomerata]
 gi|289505228|gb|EFD26286.1| CMP/dCMP deaminase zinc-binding [Frankia symbiont of Datisca
           glomerata]
          Length = 224

 Score = 42.7 bits (99), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 71  TAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           T Y +LEPCS     P  C + IIE GIRRVV    +P+V V   G + + + G+ V
Sbjct: 149 TLYSSLEPCSARASRPRTCTELIIEAGIRRVVFAWREPEVFVDCEGAEIMRRAGLDV 205


>gi|167758650|ref|ZP_02430777.1| hypothetical protein CLOSCI_00991 [Clostridium scindens ATCC 35704]
 gi|167663846|gb|EDS07976.1| hypothetical protein CLOSCI_00991 [Clostridium scindens ATCC 35704]
          Length = 157

 Score = 42.7 bits (99), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 17/127 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQ 58
           + S D ++M  A+R +R    +      + C+IV    +IGRG    +       HAE+ 
Sbjct: 1   MHSIDEKYMKEAIRQARKAYAIGEV--PIGCVIVYKDKIIGRGYNRRMADKNTLSHAELI 58

Query: 59  ALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+ +A  +         T YVTLEPC        C+  I++  + RVVV   +P    +G
Sbjct: 59  AIRKASRKMGDWRLEECTMYVTLEPCQM------CSGAIVQSRMSRVVVGCMNPKAGCAG 112

Query: 114 RGLQWLS 120
             L  L 
Sbjct: 113 SILNLLQ 119


>gi|331003430|ref|ZP_08326929.1| hypothetical protein HMPREF0491_01791 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412476|gb|EGG91865.1| hypothetical protein HMPREF0491_01791 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 155

 Score = 42.7 bits (99), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 24/160 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  F+  A++ ++   G     P + C+IV +  +I RG            HAE+ A+++
Sbjct: 4   DNYFLKEAVKQAK-KAGEIGDVP-IGCVIVFEDKIIARGYNRRNKDKSTLSHAEIIAIKK 61

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++         T Y+TLEPC      P CA  II+  I+RVV+   +P    +G  + 
Sbjct: 62  ACKKIGDWRLEDCTMYITLEPC------PMCAGAIIQSRIKRVVLGAMNPKAGCAGSIIN 115

Query: 118 WLSQKGI-------IVDRMMESEGKIFLHAYLTRQVEKRS 150
            L  +G        ++D  + SE    L ++     E + 
Sbjct: 116 ILQTEGFNHKTEISLIDEPLHSECVSLLTSFFKALRENKK 155


>gi|325970393|ref|YP_004246584.1| dCMP deaminase [Spirochaeta sp. Buddy]
 gi|324025631|gb|ADY12390.1| dCMP deaminase [Spirochaeta sp. Buddy]
          Length = 161

 Score = 42.7 bits (99), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 66/165 (40%), Gaps = 44/165 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53
           S+D  FM  A+  S     + S +PS    AC+I  D  ++G G   Y G P        
Sbjct: 9   SWDEYFMGVAVLSS-----MRSKDPSTQVGACIINADHKIVGVG---YNGFPIGVNDDEV 60

Query: 54  -----------------HAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                            HAE+ A+  A     +G + YV L PC+       CA+ II+ 
Sbjct: 61  PWEREGAWLDTKYPYVCHAELNAILNAISSSLKGCSLYVGLFPCNE------CAKAIIQS 114

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWL-SQKGIIVDRMMESEGKIFLH 139
           GIR VV   D      + +  +W+  Q G+   ++  +   I + 
Sbjct: 115 GIREVVYLSDKYAEAENTKASKWMFDQTGVTYRKLEPAHSSILVQ 159


>gi|313631569|gb|EFR98838.1| tRNA-specific adenosine deaminase [Listeria seeligeri FSL N1-067]
          Length = 156

 Score = 42.7 bits (99), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 21/133 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           +  ++V DG +IGR      T+     HAE+ A+++A    +     GA  YVTLEPC  
Sbjct: 25  IGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACNHQKSWRLSGAELYVTLEPC-- 82

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P C+  I+   I +V     DP    +G  +  L          +   +ME+E   
Sbjct: 83  ----PMCSGAILLSRIDKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCEVESGLMEAESSE 138

Query: 137 FLHAYLTRQVEKR 149
            L ++  +++ KR
Sbjct: 139 MLKSFF-QELRKR 150


>gi|309800211|ref|ZP_07694392.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          infantis SK1302]
 gi|308116152|gb|EFO53647.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          infantis SK1302]
          Length = 166

 Score = 42.7 bits (99), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG- 64
          FM  AL+ +   + L      + C+IVKDG +IGRG  A         HAE+ A+E A  
Sbjct: 11 FMREALKEA--EIALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIENANV 68

Query: 65 -EEAR---GATAYVTLEPC 79
           EE+      T +VT+EPC
Sbjct: 69 REESWRLLDCTLFVTIEPC 87


>gi|237653174|ref|YP_002889488.1| CMP/dCMP deaminase zinc-binding [Thauera sp. MZ1T]
 gi|237624421|gb|ACR01111.1| CMP/dCMP deaminase zinc-binding [Thauera sp. MZ1T]
          Length = 154

 Score = 42.7 bits (99), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 55/124 (44%), Gaps = 17/124 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  +M AAL  +R   G     P V  ++V  G ++GRG    +  +    HAE+ AL +
Sbjct: 3   DEDYMRAALEQARA-AGAADEVP-VGAVVVCGGEIVGRGFNQPIGRHDPTAHAEIMALRD 60

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A          G   YVTLEPC+       C+  I+   I RVV    DP   V+G  L 
Sbjct: 61  AAAHLGNYRLPGCELYVTLEPCAM------CSGAIMHARIARVVFGARDPKTGVAGSVLD 114

Query: 118 WLSQ 121
             ++
Sbjct: 115 LFAE 118


>gi|194289718|ref|YP_002005625.1| tRNA-specific adenosine deaminase [Cupriavidus taiwanensis LMG
           19424]
 gi|193223553|emb|CAQ69558.1| tRNA-specific adenosine deaminase [Cupriavidus taiwanensis LMG
           19424]
          Length = 194

 Score = 42.7 bits (99), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 17/124 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           DAR+M AAL  +R  +   +    V  ++V +  +I RG    + +     HAE+QAL  
Sbjct: 26  DARYMRAALEEAR--LAEAAGEVPVGAVVVWNDTIIARGHNLPIRSVDPSAHAEMQALRA 83

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +            YVTLEPC+       C+  I+   +R VV    DP    +G  + 
Sbjct: 84  AAQVIGNYRMPECELYVTLEPCAM------CSGAILHARLRHVVFGASDPKTGAAGSVVN 137

Query: 118 WLSQ 121
              Q
Sbjct: 138 LFEQ 141


>gi|313887628|ref|ZP_07821310.1| cytidine and deoxycytidylate deaminase zinc-binding region
          [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846237|gb|EFR33616.1| cytidine and deoxycytidylate deaminase zinc-binding region
          [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 150

 Score = 42.7 bits (99), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 11/82 (13%)

Query: 7  DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
          + +FM  ALR+ R    L S +  + C++VK+  +IG G            HAE+ A+  
Sbjct: 2  EIKFMKEALRYGRR--SLLSDDVPIGCVVVKNNKIIGYGYNKKEDLKNPTAHAEIMAISM 59

Query: 63 AGEEAR-----GATAYVTLEPC 79
          A          G   YVTLEPC
Sbjct: 60 AARHLNSYHLEGCDIYVTLEPC 81


>gi|332360091|gb|EGJ37905.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis
          SK1056]
          Length = 156

 Score = 42.7 bits (99), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
          FM  AL+ +   + L      + C++VK+G +IGRG  A         HAE+ A+EEA  
Sbjct: 12 FMREALKEA--EIALAYDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEANR 69

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 70 HENSWRLLDTTLFVTIEPC 88


>gi|227504965|ref|ZP_03935014.1| bifunctional deaminase-reductase domain protein [Corynebacterium
           striatum ATCC 6940]
 gi|227198474|gb|EEI78522.1| bifunctional deaminase-reductase domain protein [Corynebacterium
           striatum ATCC 6940]
          Length = 225

 Score = 42.7 bits (99), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 10/130 (7%)

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR   D ++VG GTV A+D E +    G    + M   LD    L+++SK+ +     P 
Sbjct: 51  LRKWGDVVVVGAGTVKAEDYEGSSP--GAARIAVMSYSLD----LNVESKLFQVG--TPP 102

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           +I+T +++   A A R ++         D  ++ ++  L  +G T ++ EGG  V  +FI
Sbjct: 103 LILTPDENVGTAAAQRLESAGATVLGTGDGSIQSVVAALHAQGWTRIVCEGGPGVYSAFI 162

Query: 304 NSRLVDSIIL 313
            + LVD + L
Sbjct: 163 AAGLVDKLYL 172


>gi|153815558|ref|ZP_01968226.1| hypothetical protein RUMTOR_01794 [Ruminococcus torques ATCC 27756]
 gi|317502188|ref|ZP_07960362.1| tRNA-specific adenosine deaminase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088753|ref|ZP_08337663.1| hypothetical protein HMPREF1025_01246 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847200|gb|EDK24118.1| hypothetical protein RUMTOR_01794 [Ruminococcus torques ATCC 27756]
 gi|316896397|gb|EFV18494.1| tRNA-specific adenosine deaminase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330407276|gb|EGG86779.1| hypothetical protein HMPREF1025_01246 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 162

 Score = 42.7 bits (99), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 17/127 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D ++M AA++ ++    +  T   + C+IV +G +IGRG     T      HAE++A+
Sbjct: 8   KLDEKYMRAAIKQAQKAYAINET--PIGCVIVYEGKIIGRGYNRRNTDKDPLAHAEIKAI 65

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           ++A +          T YVTLEPC        CA  II+  + RVVV   +P    +G  
Sbjct: 66  KKASKKMGDWRLEQCTMYVTLEPCQM------CAGAIIQSRLTRVVVGCMNPKAGCAGSV 119

Query: 116 LQWLSQK 122
           L  L  K
Sbjct: 120 LNLLDIK 126


>gi|91773185|ref|YP_565877.1| CMP/dCMP deaminase, zinc-binding [Methanococcoides burtonii DSM
           6242]
 gi|91712200|gb|ABE52127.1| Cytosine deaminase [Methanococcoides burtonii DSM 6242]
          Length = 143

 Score = 42.7 bits (99), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 14/100 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64
            FM  A+  +R   GL S    +  ++V+D ++IG+G    V       HAE+  L +AG
Sbjct: 3   EFMQVAIDEAR--SGLNSGGIPIGSVLVRDDLIIGKGHNLRVQQDDPMAHAEISCLRDAG 60

Query: 65  E--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                R +  Y TL PC        CA  +++ GI++V+V
Sbjct: 61  RVGSYRDSILYSTLMPCY------LCAGAVVQFGIKKVIV 94


>gi|113867903|ref|YP_726392.1| cytosine deaminase [Ralstonia eutropha H16]
 gi|113526679|emb|CAJ93024.1| cytosine deaminase [Ralstonia eutropha H16]
          Length = 200

 Score = 42.7 bits (99), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 53/124 (42%), Gaps = 17/124 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           DAR+M AAL  +R  +   +    V  ++V +  +I RG    + +     HAE+QAL  
Sbjct: 26  DARYMRAALEEAR--LAEAAGEVPVGAVVVWNDTIIARGHNLPIRSVDPSAHAEMQALRA 83

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +            YVTLEPC        C+  I+   +R VV    DP    +G  L 
Sbjct: 84  AAQVIGNYRMPECELYVTLEPCVM------CSGAILHARLRHVVFGAADPKTGAAGSVLN 137

Query: 118 WLSQ 121
              Q
Sbjct: 138 LFEQ 141


>gi|119897879|ref|YP_933092.1| cytidine deaminase [Azoarcus sp. BH72]
 gi|119670292|emb|CAL94205.1| cytidine deaminase [Azoarcus sp. BH72]
          Length = 154

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 53/118 (44%), Gaps = 21/118 (17%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM AAL   + H+        V  ++V +G ++GRG    +  +    HAEV AL +
Sbjct: 3   DEMFMRAAL--EQAHLAGACDEVPVGAVVVCEGEIVGRGFNQPIGRHDPTAHAEVMALRD 60

Query: 63  AGEEAR-------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A   AR       G   YVTLEPC        C+  I+   I RVV    DP   V+G
Sbjct: 61  AA--ARLGNYRLPGCELYVTLEPCVM------CSGAIMHARIARVVYGARDPKTGVAG 110


>gi|324995886|gb|EGC27797.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK678]
 gi|325695392|gb|EGD37292.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK150]
 gi|327488579|gb|EGF20379.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis
          SK1058]
 gi|328944679|gb|EGG38840.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis
          SK1087]
          Length = 156

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
          FM  AL+ +   + L      + C++VK+G +IGRG  A         HAE+ A+EEA  
Sbjct: 12 FMREALKEA--EIALAYDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEANR 69

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 70 HENSWRLLDTTLFVTIEPC 88


>gi|15643170|ref|NP_228214.1| deoxycytidylate deaminase, putative [Thermotoga maritima MSB8]
 gi|4980909|gb|AAD35489.1|AE001720_3 deoxycytidylate deaminase, putative [Thermotoga maritima MSB8]
          Length = 201

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 32/58 (55%), Gaps = 9/58 (15%)

Query: 54  HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE  AL +A   G    GAT YVT +PCS       CA+ I+  GI+RVV   D PD
Sbjct: 128 HAEQNALMQAAKFGIAVNGATIYVTHKPCS------ICARLIVNAGIKRVVYEKDYPD 179


>gi|293376812|ref|ZP_06623032.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Turicibacter sanguinis PC909]
 gi|325845379|ref|ZP_08168678.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Turicibacter sp. HGF1]
 gi|292644564|gb|EFF62654.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Turicibacter sanguinis PC909]
 gi|325488594|gb|EGC91004.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Turicibacter sp. HGF1]
          Length = 162

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 49/107 (45%), Gaps = 17/107 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
           +M AA+  ++    L      +  +IVKDG +I RG     T+     HAE+ A+ +A E
Sbjct: 6   YMQAAIEEAKKAQNLGEV--PIGAVIVKDGEIIARGYNLRETSQLSNAHAEMIAIAKANE 63

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
                     T YVTLEPC      P CA  I++  I  VV    DP
Sbjct: 64  MVGSWRLEDCTLYVTLEPC------PMCAGAIVQSRIPTVVFGAHDP 104


>gi|226952955|ref|ZP_03823419.1| deaminase [Acinetobacter sp. ATCC 27244]
 gi|294650537|ref|ZP_06727894.1| cytosine deaminase [Acinetobacter haemolyticus ATCC 19194]
 gi|226836276|gb|EEH68659.1| deaminase [Acinetobacter sp. ATCC 27244]
 gi|292823534|gb|EFF82380.1| cytosine deaminase [Acinetobacter haemolyticus ATCC 19194]
          Length = 174

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 61/146 (41%), Gaps = 21/146 (14%)

Query: 31  VACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEARG------ATAYVTLEPCS 80
           V  +IV    +IG G  A         HAE+QAL  A +  +       AT YVTLEPC+
Sbjct: 35  VGAVIVSQSKIIGAGYNAPILLSDPSAHAEIQALRMACQSIQNYRLPEDATLYVTLEPCT 94

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDV--RVSGRGL---QWLSQKGIIVDRMMESEGK 135
                  C   +I   I+RVV    +P     VS R L    + + K +     M+++  
Sbjct: 95  M------CVGALIHARIQRVVFATPEPKAGSLVSARQLLDSGYYNHKFVFEHGCMQAKCS 148

Query: 136 IFLHAYLTRQVEKRSHITLKIAVSQD 161
             L  +  ++  ++  I L    S D
Sbjct: 149 AQLSDFFKQRRNQKKQIRLSKTSSND 174


>gi|254827285|ref|ZP_05231972.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL
           N3-165]
 gi|258599666|gb|EEW12991.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL
           N3-165]
          Length = 156

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 21/137 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           +  ++V DG +IGR      T+     HAE+ A+++A +        GA  YVTLEPC  
Sbjct: 25  IGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPC-- 82

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P C+  I+   I +V     DP    +G  +  L          +   +ME E   
Sbjct: 83  ----PMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCEVEAGLMEKESSE 138

Query: 137 FLHAYLTRQVEKRSHIT 153
            L ++  + + KR+ + 
Sbjct: 139 MLKSFF-QNLRKRNKLN 154


>gi|262038435|ref|ZP_06011809.1| dCMP deaminase [Leptotrichia goodfellowii F0264]
 gi|261747530|gb|EEY34995.1| dCMP deaminase [Leptotrichia goodfellowii F0264]
          Length = 161

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 36/126 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGV--------------- 46
           S+D  FM  A        G+ S +PS    AC+I +D  +IG G                
Sbjct: 9   SWDEYFMGIAFL-----SGMRSKDPSTQVGACIIDEDKKIIGIGYNGFPMGSSDDNMPWN 63

Query: 47  -------TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                  T Y    HAE+ A+  + +  + A  YVT  PC+       CA+ I++ GI++
Sbjct: 64  KEGDFLNTKYPYVVHAELNAILNSIKSLKNAIIYVTHFPCNE------CAKAIVQSGIKK 117

Query: 100 VVVCVD 105
           V+   D
Sbjct: 118 VIYFSD 123


>gi|256072191|ref|XP_002572420.1| deoxycytidylate deaminase [Schistosoma mansoni]
 gi|238657578|emb|CAZ28651.1| deoxycytidylate deaminase, putative [Schistosoma mansoni]
          Length = 175

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 44/154 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53
           S+D  FMS AL        + S +PS    AC++ ++  ++G G   Y G P        
Sbjct: 22  SWDEYFMSIALL-----SAMRSKDPSTQVGACIVNQEKKIVGIG---YNGMPNGILDDDV 73

Query: 54  ------------------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                             HAE+ A+    E  + G T + T+ PC+       CA+ II+
Sbjct: 74  PWGKGSANELENKYLYVCHAELNAVLNRNEAHSGGCTLFTTMFPCNE------CAKVIIQ 127

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
            GI+ VV   D  +   S +  ++L  K  +  R
Sbjct: 128 AGIKEVVYYSDKKNGTESNQAAKYLFNKADVSIR 161


>gi|242802981|ref|XP_002484082.1| cytosine deaminase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218717427|gb|EED16848.1| cytosine deaminase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 148

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 48/106 (45%), Gaps = 18/106 (16%)

Query: 29  PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG----EEARGATAYVTLEPCS 80
           P  ACL+ KDG ++GRG            H E+ ALE +G        GAT Y TL PC 
Sbjct: 24  PIGACLVSKDGKILGRGHNMRFQKGSATLHGEISALENSGRLPASAYEGATMYTTLSPCD 83

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
                  C    I   ++RVVV  ++  +     G ++L  +GI V
Sbjct: 84  M------CTGACILYKVKRVVVGENNNFL----GGEEYLKSRGIEV 119


>gi|282915881|ref|ZP_06323646.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus D139]
 gi|283769715|ref|ZP_06342607.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus H19]
 gi|282320177|gb|EFB50522.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus D139]
 gi|283459862|gb|EFC06952.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus H19]
          Length = 156

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 55/135 (40%), Gaps = 21/135 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM+ A+  ++    L      +  +I KD  VI R      T      HAE  A+E 
Sbjct: 4   DIYFMTLAIEEAKKAARLGEV--PIGAVITKDDEVIARAHNLRETLQQPTAHAEHIAIER 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +        G T YVTLEPC        CA  I+   I RVV   DDP    SG  + 
Sbjct: 62  AAKVLGSWRLEGCTLYVTLEPCVM------CAGTIVMSRIPRVVYGADDPKGGCSGSLMN 115

Query: 118 WLSQKGI----IVDR 128
            L Q       IVD+
Sbjct: 116 LLQQSNFNHRAIVDK 130


>gi|260912280|ref|ZP_05918831.1| cytidine/deoxycytidylate deaminase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260633581|gb|EEX51720.1| cytidine/deoxycytidylate deaminase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 144

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 48/119 (40%), Gaps = 36/119 (30%)

Query: 6   FDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            D R+    LR +R W          V  L+VKD ++I  G   Y G P           
Sbjct: 10  LDLRY----LRMARIWAENSYCVRRKVGALVVKDKMIISDG---YNGTPSGFENVCEDDN 62

Query: 54  --------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                   HAE  A   L  +   + G+T YVT  PC        C++ II+ GI+RVV
Sbjct: 63  NVTKPYVLHAEANAITKLARSSNNSDGSTLYVTAAPCIE------CSKLIIQSGIKRVV 115


>gi|39995176|ref|NP_951127.1| cytidine/deoxycytidylate deaminase family protein [Geobacter
           sulfurreducens PCA]
 gi|39981938|gb|AAR33400.1| cytidine/deoxycytidylate deaminase family protein [Geobacter
           sulfurreducens PCA]
 gi|307634647|gb|ADI82903.2| tRNA (adenosine-34) deaminase [Geobacter sulfurreducens KN400]
          Length = 179

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 43/92 (46%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  +IV+DG VIGRG     G      HAE+ A+ +A   +      GAT YVTLEPC  
Sbjct: 34  IGAVIVRDGAVIGRGHNLREGSNDPSAHAEMIAIRQAARRSANWRLTGATLYVTLEPCLM 93

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 C   II   + RVV    DP    +G
Sbjct: 94  ------CMGAIILARLERVVFGCYDPKGGAAG 119


>gi|77407016|ref|ZP_00784028.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          agalactiae H36B]
 gi|77174376|gb|EAO77233.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          agalactiae H36B]
          Length = 168

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
          FM  AL+ ++    L      + C+IVKDG +IGRG  A         HAE+ A+  A E
Sbjct: 12 FMXEALKEAK--SSLEKEEIPIGCVIVKDGHIIGRGHNAREEFNKAILHAEIMAINNANE 69

Query: 66 EARG-----ATAYVTLEPC 79
          +         T +VT+EPC
Sbjct: 70 KVGNWRLLDTTLFVTVEPC 88


>gi|113969580|ref|YP_733373.1| CMP/dCMP deaminase, zinc-binding [Shewanella sp. MR-4]
 gi|113884264|gb|ABI38316.1| CMP/dCMP deaminase, zinc-binding [Shewanella sp. MR-4]
          Length = 252

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 15/98 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++VK+G  I  G    ++ +  C HAE+Q L  AG+          T YVTLEPC+ 
Sbjct: 111 VGAVLVKEGQQIATGYNLSISEHDPCAHAEIQCLRAAGQTIENYRLLDTTLYVTLEPCAM 170

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                 CA  ++   I RVV    D     +G  L  L
Sbjct: 171 ------CAGAMVHSRIARVVFGAKDEKTGAAGTVLNLL 202


>gi|163814785|ref|ZP_02206174.1| hypothetical protein COPEUT_00936 [Coprococcus eutactus ATCC 27759]
 gi|158450420|gb|EDP27415.1| hypothetical protein COPEUT_00936 [Coprococcus eutactus ATCC 27759]
          Length = 181

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 17/114 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG 64
           ++M  AL  +R      + +  + C+IV +G +I RG            HAE+ A+E+A 
Sbjct: 31  KYMDKALAQARR--AYANGDVPIGCVIVHEGKIIARGFNKRNLKKTTLAHAEILAIEQAS 88

Query: 65  EEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           ++         T YVTLEPC        CA  I++  I +VV+   +P    +G
Sbjct: 89  KKLGDWRLEECTMYVTLEPCQM------CAGAIVQARIPKVVIGCMNPKAGCAG 136


>gi|302390580|ref|YP_003826401.1| CMP/dCMP deaminase zinc-binding protein [Thermosediminibacter
           oceani DSM 16646]
 gi|302201208|gb|ADL08778.1| CMP/dCMP deaminase zinc-binding protein [Thermosediminibacter
           oceani DSM 16646]
          Length = 152

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 13/82 (15%)

Query: 54  HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           HAE  A+ +A   G   +GAT YVT +PC+       CA+ +I  GIRR+V   + PD  
Sbjct: 81  HAEQNAIIQAAIWGTSIKGATIYVTHQPCA------LCAKMLINAGIRRIVFKGEYPD-- 132

Query: 111 VSGRGLQWLSQKGIIVDRMMES 132
                L+ LS+ G+ + R  ++
Sbjct: 133 --NLALELLSEAGVEICRYTQN 152


>gi|238922727|ref|YP_002936240.1| cytidine and deoxycytidylate deaminase family protein [Eubacterium
           rectale ATCC 33656]
 gi|238874399|gb|ACR74106.1| cytidine and deoxycytidylate deaminase family protein [Eubacterium
           rectale ATCC 33656]
          Length = 162

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 17/116 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D ++M  A++ ++    L      + C+IV    +I RG     T      HAE+ A+ +
Sbjct: 9   DEKYMKQAIKQAKKAYALDEV--PIGCVIVAGDKIIARGYNRRNTDKNPLAHAELSAIRK 66

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A ++         T YVTLEPC        CA  I++  I RVV+   +P    +G
Sbjct: 67  ASKKTGDWRLEECTMYVTLEPCQM------CAGAIVQARIPRVVIGAMNPKAGCAG 116


>gi|261377687|ref|ZP_05982260.1| tRNA-specific adenosine deaminase [Neisseria cinerea ATCC 14685]
 gi|269145955|gb|EEZ72373.1| tRNA-specific adenosine deaminase [Neisseria cinerea ATCC 14685]
          Length = 239

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 21/104 (20%)

Query: 31  VACLIVKDGIVIGRGVTAYGGC-------PHAEVQALEEAGEEAR-----GATAYVTLEP 78
           V  +IV DG +I    +A+  C        HAE+ AL +A  E +     G   Y+TLEP
Sbjct: 114 VGAVIVSDGKIIA---SAHNTCIADCNVSRHAEINALAQASSEMQNYRLDGCDIYITLEP 170

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           C+       CA  +I+  I+RV+    +P    +G  +   + K
Sbjct: 171 CAM------CASALIQARIKRVIYGAVEPKTGAAGSIVNLFADK 208


>gi|317125029|ref|YP_004099141.1| bifunctional deaminase-reductase domain protein [Intrasporangium
           calvum DSM 43043]
 gi|315589117|gb|ADU48414.1| bifunctional deaminase-reductase domain protein [Intrasporangium
           calvum DSM 43043]
          Length = 254

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 82/194 (42%), Gaps = 33/194 (17%)

Query: 184 HLLRAQSDAILVGIGTVLAD-------DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
            LLR  S A++VG GT+ A+        P++      L    P+ +I      +S   ++
Sbjct: 66  ELLRGLSHAVIVGAGTIRAEGYTGLTVSPDVLPLRRDLGIDEPLPLI-----AVSRSGRL 120

Query: 237 IKTALLA---PVIIVTENDDPVLALA---FRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
            ++A  A   P ++ T    P LA A     ++++ +   D  DL  L+  L  RG T L
Sbjct: 121 PESAQGAAGGPALLATCARAPGLAEAQSILGREHVLVCGEDEVDLPLLVARLHERGWTRL 180

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGE------GGIPSPLE---------EGYLE 335
           L EGG  +  SF+  RLVD +    +  V+G       G   SPLE         +G L 
Sbjct: 181 LCEGGPHLTGSFLAVRLVDELCFTIAPRVVGGMHPRPVGPAASPLELELGSLVEADGTLM 240

Query: 336 KNFMCVRRDYFGSD 349
             +   RR     D
Sbjct: 241 GRWFTPRRPSGSGD 254


>gi|307354384|ref|YP_003895435.1| CMP/dCMP deaminase zinc-binding protein [Methanoplanus petrolearius
           DSM 11571]
 gi|307157617|gb|ADN36997.1| CMP/dCMP deaminase zinc-binding protein [Methanoplanus petrolearius
           DSM 11571]
          Length = 148

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 14/100 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64
           RFM+AA+  ++   G       +  ++V+DG +IG G    +       HAE+  L  AG
Sbjct: 7   RFMTAAIIEAK--TGHDEGGIPIGAVLVRDGKIIGSGHNRRIQENDPIIHAEIDCLRNAG 64

Query: 65  E--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                +  T Y TL PC        CA  +++ GIRRVVV
Sbjct: 65  RIGSYKDTTLYSTLMPCYL------CAGAVVQFGIRRVVV 98


>gi|288924860|ref|ZP_06418797.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
           buccae D17]
 gi|315607887|ref|ZP_07882880.1| competence protein ComEB [Prevotella buccae ATCC 33574]
 gi|288338647|gb|EFC76996.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
           buccae D17]
 gi|315250356|gb|EFU30352.1| competence protein ComEB [Prevotella buccae ATCC 33574]
          Length = 148

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 45/113 (39%), Gaps = 35/113 (30%)

Query: 15  LRFSR----WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------------- 53
           LR+ R    W          V  L+VKD ++I  G   Y G P                 
Sbjct: 13  LRYLRMACIWSENSYCERRKVGALVVKDKMIISDG---YNGTPSGFENVCEDENHITKPY 69

Query: 54  --HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
             HAE  A   L  +   + G+T YVT  PC        CA+ II+ GI+RVV
Sbjct: 70  VLHAEANAITKLARSSNNSDGSTLYVTASPCIE------CAKLIIQAGIKRVV 116


>gi|290891900|ref|ZP_06554897.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL
           J2-071]
 gi|290558494|gb|EFD92011.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL
           J2-071]
          Length = 156

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 21/137 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           +  ++V DG +IGR      T+     HAE+ A+++A +        GA  YVTLEPC  
Sbjct: 25  IGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPC-- 82

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P C+  I+   I +V     DP    +G  +  L          +   +ME E   
Sbjct: 83  ----PMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCEVEAGLMEKESSE 138

Query: 137 FLHAYLTRQVEKRSHIT 153
            L ++  + + KR+ + 
Sbjct: 139 MLKSFF-QNLRKRNKLN 154


>gi|332289514|ref|YP_004420366.1| tRNA-specific adenosine deaminase [Gallibacterium anatis UMN179]
 gi|330432410|gb|AEC17469.1| tRNA-specific adenosine deaminase [Gallibacterium anatis UMN179]
          Length = 153

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 15/87 (17%)

Query: 29  PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARGA-----TAYVTLEPC 79
           P  A L+ + G ++  G    +T      HAE+ AL +AG++ +       T YVTLEPC
Sbjct: 18  PVGAVLVDEQGNIVAEGWNQSITLSDPTAHAEIMALRQAGQKLQNYRLLNLTLYVTLEPC 77

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDD 106
                 P CA  I+   I+R+V    D
Sbjct: 78  ------PMCAGAILHSRIKRLVFGASD 98


>gi|224541628|ref|ZP_03682167.1| hypothetical protein CATMIT_00799 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525466|gb|EEF94571.1| hypothetical protein CATMIT_00799 [Catenibacterium mitsuokai DSM
           15897]
          Length = 147

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 17/105 (16%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGR----GVTAYGGCPHAEVQALEE 62
           D  +M+ AL+ +   + ++     + C+IV +G +I R      T      HAE+ A+ +
Sbjct: 3   DEEYMAEALKEAE--IAMSEDEVPIGCIIVYEGQIIARTHNQKETLKKATGHAEILAINQ 60

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           A E        G T YVTLEPC        C   II+  + R+V+
Sbjct: 61  ASEYLDLWHLDGCTMYVTLEPCMM------CTGAIIQSRMSRLVI 99


>gi|253702219|ref|YP_003023408.1| CMP/dCMP deaminase zinc-binding [Geobacter sp. M21]
 gi|251777069|gb|ACT19650.1| CMP/dCMP deaminase zinc-binding protein [Geobacter sp. M21]
          Length = 166

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  ++VKDG+VI RG     +      HAE+ A+ +A ++       GAT YVTLEPC+ 
Sbjct: 27  IGAVVVKDGVVIARGHNLRESKQDPAAHAEMIAIRKAAKKLASWRLTGATLYVTLEPCTM 86

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 C   +I   + RVV    DP    +G
Sbjct: 87  ------CMGAVILSRLERVVFGSYDPKGGAAG 112


>gi|28209851|ref|NP_780795.1| cytosine deaminase [Clostridium tetani E88]
 gi|28202286|gb|AAO34732.1| cytosine deaminase [Clostridium tetani E88]
          Length = 146

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 59/146 (40%), Gaps = 21/146 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA-- 63
           FM  A+  +R  + +      +  +IVK+  +IGRG      +     HAE+ A+ EA  
Sbjct: 5   FMKEAVLEARKALNINEV--PIGAVIVKENKIIGRGHNLVEKSKNPLAHAEIIAIREACK 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                   G   YVTLEPC      P CA  II   + +V +   DP+    G  +    
Sbjct: 63  SINNWRLNGCHMYVTLEPC------PMCAGAIIRSRMDKVYIGTFDPNSGACGTIINLTQ 116

Query: 121 QK----GIIVDRMMESEGKIFLHAYL 142
            K     I ++ + + E    L  + 
Sbjct: 117 NKYLNTNININWLYDEESSTLLKKFF 142


>gi|114046813|ref|YP_737363.1| tRNA-adenosine deaminase [Shewanella sp. MR-7]
 gi|113888255|gb|ABI42306.1| tRNA-adenosine deaminase [Shewanella sp. MR-7]
          Length = 222

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 15/99 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++VK+G  I  G    ++ +  C HAE+Q L  AG+          T YVTLEPC+ 
Sbjct: 81  VGAVLVKEGQQIAAGYNLSISEHDPCAHAEIQCLRAAGQTIENYRLLDTTLYVTLEPCA- 139

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                 CA  ++   I RVV    D     +G  L  L 
Sbjct: 140 -----MCAGAMVHSRIARVVFGAKDEKTGAAGTVLNLLQ 173


>gi|260886684|ref|ZP_05897947.1| tRNA-specific adenosine deaminase [Selenomonas sputigena ATCC
           35185]
 gi|330839487|ref|YP_004414067.1| CMP/dCMP deaminase zinc-binding protein [Selenomonas sputigena ATCC
           35185]
 gi|260863536|gb|EEX78036.1| tRNA-specific adenosine deaminase [Selenomonas sputigena ATCC
           35185]
 gi|329747251|gb|AEC00608.1| CMP/dCMP deaminase zinc-binding protein [Selenomonas sputigena ATCC
           35185]
          Length = 168

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 16/109 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM  AL+ ++         P  A L+  DG V+ R      T + G  HAE+ AL+E
Sbjct: 4   DIAFMKEALKEAQ-EAFQAGEVPIGAVLVDADGTVVARAHNMRETWHDGTAHAEIIALQE 62

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           A  +       G T YVT+EPC      P CA  ++   + RVV    D
Sbjct: 63  AARKLGRWRLSGLTLYVTIEPC------PMCAGALVMSRVDRVVYGATD 105


>gi|229159196|ref|ZP_04287222.1| hypothetical protein bcere0009_110 [Bacillus cereus R309803]
 gi|228624277|gb|EEK81077.1| hypothetical protein bcere0009_110 [Bacillus cereus R309803]
          Length = 166

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 21/146 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  +IV DG VI        T      HAE+ A++EA ++        AT YVTLEPC  
Sbjct: 28  IGAVIVLDGEVISSAHNLRETEQRSIAHAELLAIDEACKKLGTWRLEDATLYVTLEPC-- 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P CA  I+   ++RVV    DP    +G  +  L+ +       +V  ++E E   
Sbjct: 86  ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVTGVLEEECGT 141

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDN 162
            L  +     +KR  I  K+  S +N
Sbjct: 142 LLTNFFRELRKKRKEIK-KLEKSNEN 166


>gi|90410888|ref|ZP_01218902.1| Putative cytosine/adenosine deaminase [Photobacterium profundum
           3TCK]
 gi|90328101|gb|EAS44412.1| Putative cytosine/adenosine deaminase [Photobacterium profundum
           3TCK]
          Length = 175

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 31/148 (20%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V +G V+G G    +  +    HAE+ AL +AG+  +      AT YVTLEPC  
Sbjct: 36  VGAVVVYEGRVVGEGWNRSIGQHDATAHAEMMALRQAGKVIQNYRLLDATLYVTLEPC-- 93

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS----------QKGIIVDRMME 131
               P CA  ++   I +V+    D     +G  +  LS          Q G++     +
Sbjct: 94  ----PMCAGAMVHSRIGKVIFGASDLKTGAAGSVMNLLSYDEVNHHVDCQAGVL-----D 144

Query: 132 SEGKIFLHAYLT-RQVEKRSHITLKIAV 158
            E +  L A+   R+ EK++    + A 
Sbjct: 145 EECRAQLQAFFKRRRAEKKAEKKARQAA 172


>gi|315633684|ref|ZP_07888974.1| tRNA-specific adenosine deaminase [Aggregatibacter segnis ATCC
           33393]
 gi|315477726|gb|EFU68468.1| tRNA-specific adenosine deaminase [Aggregatibacter segnis ATCC
           33393]
          Length = 175

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 16/112 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59
              D +FM  AL  +     L    P  A L+ ++G +IG G    +       HAE+ A
Sbjct: 6   QQLDEQFMRHALMLADKAEALGEI-PVGAVLVSEEGEIIGEGWNLSIIDSDPTAHAEIVA 64

Query: 60  LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           L + G+  +      AT YVTLEPC+       CA  I+   I+R+V    D
Sbjct: 65  LRQGGQRLQNYRLLNATLYVTLEPCT------MCAGAILHSRIKRLVFGAAD 110


>gi|58177055|pdb|1VQ2|A Chain A, Crystal Structure Of T4-Bacteriophage Deoxycytidylate
           Deaminase, Mutant R115e
          Length = 193

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 9/53 (16%)

Query: 54  HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           HAE+ A+    E G    GAT YVTL PC      P CA+ I + GI+++V C
Sbjct: 104 HAELNAILFAAENGSSIEGATMYVTLSPC------PDCAKAIAQSGIKKLVYC 150


>gi|315125849|ref|YP_004067852.1| tRNA-specific adenosine deaminase [Pseudoalteromonas sp. SM9913]
 gi|315014363|gb|ADT67701.1| tRNA-specific adenosine deaminase [Pseudoalteromonas sp. SM9913]
          Length = 168

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 17/124 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI----GRGVTAYGGCPHAEVQALEE 62
           D  +M  AL +++    L      V  +IVKD  +I     R +T      HAE+ A+ E
Sbjct: 7   DQYWMEQALVYAKQAEQLDEI--PVGAIIVKDNQLISAGYNRSITDNDPSAHAEMIAVRE 64

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AG+          T YVTLEPCS       CA  ++   I+R+V    D     +G  + 
Sbjct: 65  AGKVLNNYRLIDCTLYVTLEPCSM------CAGLLVHSRIKRLVFGAADAKTGSAGSIMN 118

Query: 118 WLSQ 121
            L +
Sbjct: 119 LLQE 122


>gi|313901432|ref|ZP_07834892.1| bifunctional deaminase-reductase domain protein [Thermaerobacter
           subterraneus DSM 13965]
 gi|313468303|gb|EFR63757.1| bifunctional deaminase-reductase domain protein [Thermaerobacter
           subterraneus DSM 13965]
          Length = 252

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 82/177 (46%), Gaps = 16/177 (9%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSV--PITGFISKNQVHLLRAQSDAILVGIGTVLADD-- 204
           R ++ + +  + D  + M G G+V  PI   +    +  LRA  DA+L G GTV A D  
Sbjct: 30  RPYVLVNMVSTVDGKVTM-GRGAVQEPIGSKVDHGLMARLRAPVDAVLRGAGTVRAYDVP 88

Query: 205 PELTC------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           P +        +  GL    P+ +++     L LD++  + A   P +++T    P   +
Sbjct: 89  PRVPAEYAERRQARGLPPQ-PLPVVITGSCDLPLDARFFREAPRRP-LVLTRRAAPADKV 146

Query: 259 AFRKKNINIIYC--DCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSII 312
              ++  ++ +   +  +++  L +L  R G+  LL EGG  V  + + + +VD + 
Sbjct: 147 EAVRQVADVAFAGEEQVEMRAALALLRERYGIQRLLSEGGPTVNFAMLEAGVVDELF 203


>gi|34541467|ref|NP_905946.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
           gingivalis W83]
 gi|188995653|ref|YP_001929905.1| putative deoxycytidylate deaminase [Porphyromonas gingivalis ATCC
           33277]
 gi|34397784|gb|AAQ66845.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
           gingivalis W83]
 gi|188595333|dbj|BAG34308.1| putative deoxycytidylate deaminase [Porphyromonas gingivalis ATCC
           33277]
          Length = 151

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 58/145 (40%), Gaps = 40/145 (27%)

Query: 6   FDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            D R+    LR +R W          V  LIVK+ ++I  G   Y G P           
Sbjct: 15  LDKRY----LRMARIWAENSYCERRKVGALIVKEQMIISDG---YNGTPAGFENICEDEN 67

Query: 54  --------HAEVQALEEAG---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  A+ +       + GAT Y+T  PC        CA+ II+  I+RVV 
Sbjct: 68  NVTKPYVLHAEANAITKVAGSTNNSSGATIYITAAPCIE------CAKLIIQSKIKRVVY 121

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVD 127
                  R+   G + L + GI+VD
Sbjct: 122 ---SEKYRLD-EGCRLLERAGIVVD 142


>gi|331265454|ref|YP_004325084.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          oralis Uo5]
 gi|326682126|emb|CBY99742.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          oralis Uo5]
          Length = 155

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64
          FM  AL+ +   + L      + C+IVKDG +IGRG  A         HAE+ A+E A  
Sbjct: 11 FMREALKEA--EIALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIENANL 68

Query: 65 -EEAR---GATAYVTLEPC 79
           EE+      T +VT+EPC
Sbjct: 69 SEESWRLLDCTLFVTIEPC 87


>gi|325846128|ref|ZP_08169222.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481721|gb|EGC84756.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 185

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 15/85 (17%)

Query: 31  VACLIVKDGIVIGRGVT-AYGG---CPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           + C+IVK+G +I R     Y G     HAE+ A+++A +          T YVT+EPCS 
Sbjct: 25  IGCVIVKNGKIIARSHNYTYKGKSALKHAEILAIDKASKYVGDFRLEDCTMYVTMEPCSM 84

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDD 106
                 CA  II   I R+V+ + D
Sbjct: 85  ------CAGAIINSRIDRLVIALAD 103


>gi|288928373|ref|ZP_06422220.1| cytidine/deoxycytidylate deaminase family protein [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288331207|gb|EFC69791.1| cytidine/deoxycytidylate deaminase family protein [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 146

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 48/119 (40%), Gaps = 36/119 (30%)

Query: 6   FDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            D R+    LR +R W          V  L+VKD ++I  G   Y G P           
Sbjct: 10  LDLRY----LRMARIWAENSYCVRRKVGALVVKDKMIISDG---YNGTPSGFENVCEDDN 62

Query: 54  --------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                   HAE  A   L  +   + G+T YVT  PC        C++ II+ GI+RVV
Sbjct: 63  NVTKPYVLHAEANAITKLARSSNNSDGSTLYVTAAPCIE------CSKLIIQSGIKRVV 115


>gi|15601943|ref|NP_245015.1| hypothetical protein PM0078 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720287|gb|AAK02162.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 166

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 16/112 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59
           S  D ++M  ALR +     L    P  A L+ + G ++G G    ++      HAE+ A
Sbjct: 3   SDMDEKWMRHALRLADKAEQLGEI-PVGAVLVDEQGNLLGEGWNLSISESDPTAHAEIVA 61

Query: 60  LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           L + G+  +       T YVTLEPC+       CA  I+   I+R+V    D
Sbjct: 62  LRQGGQRLQNYRLLNTTLYVTLEPCT------MCAGAILHSRIKRLVFGASD 107


>gi|291165661|gb|EFE27710.1| cytidine/deoxycytidylate deaminase family protein [Filifactor
          alocis ATCC 35896]
          Length = 150

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65
          +M  A R + +          V  +IVKD ++IGRG     T      HAE+ A+++A +
Sbjct: 4  YMEEAFREALY--SYQKEEVPVGAVIVKDDVIIGRGHNVIETHQSSVCHAEMIAIQQAQK 61

Query: 66 EAR-----GATAYVTLEPC 79
            R     GA  YVTLEPC
Sbjct: 62 HLRNWRLNGAKMYVTLEPC 80


>gi|51891218|ref|YP_073909.1| dCMP deaminase [Symbiobacterium thermophilum IAM 14863]
 gi|51854907|dbj|BAD39065.1| dCMP deaminase [Symbiobacterium thermophilum IAM 14863]
          Length = 144

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 41/157 (26%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M   S+D  FM  A   ++     T     V  ++V+D  ++    T Y G P       
Sbjct: 1   MARPSWDEYFMELAQVVAKRS---TCNRRKVGTVLVRDKRIL---TTGYNGSPSGLPHCT 54

Query: 54  ---------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                          HAE  A+ +A   G   +GAT YVT  PC H      CA+ +I  
Sbjct: 55  DVGCLVVDGHCVRAIHAEQNAIIQAALHGITLKGATCYVTSSPCVH------CAKMLIAA 108

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
           GI R+V  +D+   ++   GL+   Q G++++R   S
Sbjct: 109 GIERIVY-MDEYTEQI---GLEMARQAGVVMERFTPS 141


>gi|50085441|ref|YP_046951.1| putative deaminase [Acinetobacter sp. ADP1]
 gi|49531417|emb|CAG69129.1| putative deaminase [Acinetobacter sp. ADP1]
          Length = 174

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 21/147 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG------ATAYVTLEPCS 80
           V  +IV    VIG G    +T      HAE++A+  A E  +       AT YVTLEPC+
Sbjct: 31  VGAVIVSQNKVIGSGYNAPITLNDPTAHAEIRAIRMACESVKNYRLPEDATLYVTLEPCT 90

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDV--RVSGRGL---QWLSQKGIIVDRMMESEGK 135
                  C   ++   I RVV    +P     VS R L    + + K +I    M+++  
Sbjct: 91  M------CVGALVHARIHRVVFATTEPKAGSLVSARQLLNMGYYNHKFLIEHGCMQAQCS 144

Query: 136 IFLHAYLTRQVEKRSHITLKIAVSQDN 162
             L  +  ++ E++  +  +   + +N
Sbjct: 145 KQLSDFFRKRREQKRELRQQYIATSEN 171


>gi|295394785|ref|ZP_06805000.1| riboflavin biosynthesis protein RibD [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294972381|gb|EFG48241.1| riboflavin biosynthesis protein RibD [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 258

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 11/156 (7%)

Query: 185 LLRAQSDAILVGIGTVLAD-----DPE---LTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
           ++R+ +DA++VG  TV ++      P+   L  R    Q   P+ +I+     L  D   
Sbjct: 77  VVRSLADAVVVGAQTVRSERLTRMSPKPAHLNQRHARGQTDVPIMVIVTSSGDLPWDR-- 134

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
           I     +PV + T   DP + LA  +++ + +       + +   LV RG+  L+ EGG 
Sbjct: 135 INERGTSPVWVATNTSDPQV-LAELRRHADEVLTGIESPQAVKDALVARGLRRLVCEGGP 193

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
            V   ++++ L+D + L  S  + G  G P    EG
Sbjct: 194 NVLAQWMDAGLIDEMCLTVSPKLHGTPGAPRLFGEG 229


>gi|268552503|ref|XP_002634234.1| Hypothetical protein CBG01804 [Caenorhabditis briggsae]
 gi|187037916|emb|CAP22833.1| hypothetical protein CBG_01804 [Caenorhabditis briggsae AF16]
          Length = 426

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 68/147 (46%), Gaps = 27/147 (18%)

Query: 31  VACLIVKDGIVIGRGVTAYG--GCP--HAEVQALEE----AGEEA----RGATAYVTLEP 78
           V C+ V DG  IGRG       G P  HAE+ A+ E     GEE+    + +  YV+LEP
Sbjct: 31  VGCVFVVDGEEIGRGRNRVNETGDPTRHAEMVAVTEIWSKYGEESNNLLKKSVLYVSLEP 90

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPD---VRVSGRGLQWLSQKGIIVDRMMESEGK 135
           C        C+  + + GIR++V   ++P    VR  G   ++  +  I +   + +E  
Sbjct: 91  CIM------CSSAMYQLGIRKMVYGAENPRFGGVRSVGSAEKYREENNIEIVAGVWAERS 144

Query: 136 I-FLHAYLTRQ-----VEKRSHITLKI 156
           +  L A+  +Q      EKR   T K+
Sbjct: 145 VGMLKAFYEKQNPFAPPEKRKTKTPKL 171


>gi|158316923|ref|YP_001509431.1| hypothetical protein Franean1_5167 [Frankia sp. EAN1pec]
 gi|158112328|gb|ABW14525.1| bifunctional deaminase-reductase domain protein [Frankia sp.
           EAN1pec]
          Length = 270

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 15/193 (7%)

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
           L   V    H+      S D  I + G  S  + G         LR  SD +LVG GT  
Sbjct: 48  LPEPVPGVPHVRSNFVTSADGAIEINGR-SADLGGPADLRVFRTLRWLSDVVLVGAGTAR 106

Query: 202 ADD--PELT-------CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252
            +D  P L            GL    P+ ++     +L  D+++  TA + P+++  E  
Sbjct: 107 TEDYGPVLVPAERRERRAAAGLTPVPPVAVVSG-RLELDPDARLF-TAAVRPLLLTCEAA 164

Query: 253 DPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
            P+   A  +    I+ C  +  + +  L  L  RG+  +L EGG  +   F  + L+D 
Sbjct: 165 PPLRRRAL-EPVAEIVVCGDETVEPRAALDALAERGLLRVLTEGGPRLHAQFAQAGLLDE 223

Query: 311 IILYRSQIVIGEG 323
           + L  + ++ G G
Sbjct: 224 LCLTLAPVLAGPG 236


>gi|47092339|ref|ZP_00230130.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           monocytogenes str. 4b H7858]
 gi|226225270|ref|YP_002759377.1| hypothetical protein Lm4b_02693 [Listeria monocytogenes Clip81459]
 gi|254824916|ref|ZP_05229917.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL
           J1-194]
 gi|255520888|ref|ZP_05388125.1| hypothetical protein LmonocFSL_06656 [Listeria monocytogenes FSL
           J1-175]
 gi|47019318|gb|EAL10060.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           monocytogenes str. 4b H7858]
 gi|225877732|emb|CAS06447.1| Conserved hypothetical proteins [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|293594156|gb|EFG01917.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL
           J1-194]
 gi|328468199|gb|EGF39205.1| hypothetical protein LM1816_02662 [Listeria monocytogenes 1816]
          Length = 156

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 21/137 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           +  ++V DG +IGR      T+     HAE+ A+++A +        GA  YVTLEPC  
Sbjct: 25  IGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPC-- 82

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P C+  I+   I +V     DP    +G  +  L          +   +ME E   
Sbjct: 83  ----PMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCEVEAGLMEKESSE 138

Query: 137 FLHAYLTRQVEKRSHIT 153
            L ++  + + KR+ + 
Sbjct: 139 MLRSFF-QDLRKRNKLN 154


>gi|169599362|ref|XP_001793104.1| hypothetical protein SNOG_02499 [Phaeosphaeria nodorum SN15]
 gi|111069591|gb|EAT90711.1| hypothetical protein SNOG_02499 [Phaeosphaeria nodorum SN15]
          Length = 265

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 21/107 (19%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
           ++  RFM  A+  +   + L S    V C+ VKDG +IGRG+        G  HAE  A+
Sbjct: 68  AYHERFMREAIAMA--ELALKSDETPVGCVFVKDGEIIGRGMNETNRTLNGTRHAEFVAI 125

Query: 61  EEAGEEARGATA-------YVTLEPCSHYGRSPPCAQFIIECGIRRV 100
             AG  ++           YVT+EPC        CA  + + GIR V
Sbjct: 126 --AGILSKSPVKILNETDLYVTVEPCVM------CASMLRQYGIRAV 164


>gi|293401503|ref|ZP_06645646.1| probable deoxycytidylate deaminase [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305141|gb|EFE46387.1| probable deoxycytidylate deaminase [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 161

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 9/75 (12%)

Query: 45  GVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
           G T Y    HAE+ A+  +  + RG + YV+L PC+       CA+ II+ GI R+V   
Sbjct: 68  GATKYPYVVHAELNAILNSKNDLRGCSIYVSLFPCNE------CAKAIIQSGISRIVYES 121

Query: 105 D---DPDVRVSGRGL 116
           D   D D  ++ + +
Sbjct: 122 DKYADTDATIASKRM 136


>gi|307249782|ref|ZP_07531760.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858197|gb|EFM90275.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 196

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           + +S  D  FM  AL  +     +    P  A L+ ++G +IG G    +       HAE
Sbjct: 34  LTISEQDIHFMQYALELAD-RAEVIGEIPVGAVLVDQEGNIIGEGWNQVIQLSDPSAHAE 92

Query: 57  VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           + A+ +AG+  R       T YVTLEPC+       CA  I+   +RR+V    D
Sbjct: 93  MLAIRQAGKVQRNYRLLDCTLYVTLEPCTM------CAGAILHSRLRRLVFGASD 141


>gi|332308193|ref|YP_004436044.1| CMP/dCMP deaminase zinc-binding protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175522|gb|AEE24776.1| CMP/dCMP deaminase zinc-binding protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 145

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 16/102 (15%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT--AYGGCP--HAEVQALEEAG 64
           +FM AA+  ++   GL      +  ++V    +IGRG       G P  H E+ ALE AG
Sbjct: 3   KFMQAAIDEAKQ--GLAEGGIPIGSVLVYQDEIIGRGHNRRVQSGSPILHGEMDALENAG 60

Query: 65  EEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
            +     + +T Y TL PCS       C+  I+  GI +VV+
Sbjct: 61  RQPASVYKASTLYTTLSPCSM------CSGTILLYGIPKVVI 96


>gi|209966407|ref|YP_002299322.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase, putative
           [Rhodospirillum centenum SW]
 gi|209959873|gb|ACJ00510.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase, putative
           [Rhodospirillum centenum SW]
          Length = 226

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 18/166 (10%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
           + + +A+S D  I  AG   + ++G     +V   RA +DA+LVG GT+  DDP LT R+
Sbjct: 4   VQVSVAMSLDGCIDRAGGERLVLSGAEDLREVQAARAAADAVLVGAGTLRRDDPRLTVRV 63

Query: 212 NGLQE--------HSPMRIILDPHFKLSLDSKII----KTALLAPVIIVTENDDPVLALA 259
             L++          P R+ L     +  D+       +  +L P  +       + A+A
Sbjct: 64  PELRQGRLDRGLPADPARVALTRSGTIDPDAAFFAGDGRRFVLCPTAVAPGLRRRLGAVA 123

Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
                  ++  +  D   ++  L G G+  LLVEGG  V   F+ S
Sbjct: 124 ------TVLPLERTDAPSIVAALEGVGIDRLLVEGGTQVLTLFLAS 163


>gi|46908898|ref|YP_015287.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|254851976|ref|ZP_05241324.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL
           R2-503]
 gi|254931009|ref|ZP_05264368.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes HPB2262]
 gi|254994111|ref|ZP_05276301.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           monocytogenes FSL J2-064]
 gi|300763522|ref|ZP_07073520.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           monocytogenes FSL N1-017]
 gi|46882171|gb|AAT05464.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|258605274|gb|EEW17882.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL
           R2-503]
 gi|293582555|gb|EFF94587.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes HPB2262]
 gi|300515799|gb|EFK42848.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           monocytogenes FSL N1-017]
 gi|328469576|gb|EGF40517.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           monocytogenes 220]
 gi|332313149|gb|EGJ26244.1| tRNA-specific adenosine deaminase [Listeria monocytogenes str.
           Scott A]
          Length = 156

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 21/137 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           +  ++V DG +IGR      T+     HAE+ A+++A +        GA  YVTLEPC  
Sbjct: 25  IGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPC-- 82

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P C+  I+   I +V     DP    +G  +  L          +   +ME E   
Sbjct: 83  ----PMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCEVEAGLMEKESSE 138

Query: 137 FLHAYLTRQVEKRSHIT 153
            L ++  + + KR+ + 
Sbjct: 139 MLKSFF-QDLRKRNKLN 154


>gi|307706899|ref|ZP_07643700.1| tRNA-specific adenosine deaminase [Streptococcus mitis SK321]
 gi|307617691|gb|EFN96857.1| tRNA-specific adenosine deaminase [Streptococcus mitis SK321]
          Length = 155

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64
          FM  ALR +   + L      + C+IVK+G +IGRG  A         HAE+ A+E A  
Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKEGEIIGRGHNAREELQRAVMHAEIMAIENANL 68

Query: 65 -EEAR---GATAYVTLEPC 79
           EE+      T +VT+EPC
Sbjct: 69 SEESWRLLDCTLFVTIEPC 87


>gi|212634313|ref|YP_002310838.1| cytidine/deoxycytidylate deaminase [Shewanella piezotolerans WP3]
 gi|212555797|gb|ACJ28251.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Shewanella
           piezotolerans WP3]
          Length = 186

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 17/116 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D+RFM  A+  +            V  ++VKDG V+  G     G      HAE+Q + +
Sbjct: 20  DSRFMKMAMEMAAK--AEEKGEVPVGAVLVKDGEVVSAGFNYSIGLHDPSAHAEMQCIRQ 77

Query: 63  AG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AG   E  R    T YVTLEPC+       CA  I+   I R+V   +D     +G
Sbjct: 78  AGQLLENYRLLDTTLYVTLEPCAM------CAGAIVHSRISRLVYGANDEKTGAAG 127


>gi|294101414|ref|YP_003553272.1| CMP/dCMP deaminase zinc-binding protein [Aminobacterium colombiense
           DSM 12261]
 gi|293616394|gb|ADE56548.1| CMP/dCMP deaminase zinc-binding protein [Aminobacterium colombiense
           DSM 12261]
          Length = 168

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 54/121 (44%), Gaps = 17/121 (14%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPP 87
           V CL  K GI  G       G  HAE+ A+ +A   G    GA  Y T EPCS       
Sbjct: 58  VGCLRDKLGIPSGERHEICRG-SHAEINAIAQAAAVGTRTEGAVLYCTHEPCSF------ 110

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME---SEGKIFLHAYLTR 144
           C + II  GIRR+V     PD   S    +  SQ  + V ++ E    E  + L A+L +
Sbjct: 111 CTKAIINAGIRRIVFVYPYPDALAS----EMRSQASLEVCQLSEKVFQEMDLALKAFLQQ 166

Query: 145 Q 145
           +
Sbjct: 167 R 167


>gi|291526516|emb|CBK92103.1| Cytosine/adenosine deaminases [Eubacterium rectale DSM 17629]
 gi|291527005|emb|CBK92591.1| Cytosine/adenosine deaminases [Eubacterium rectale M104/1]
          Length = 157

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 17/116 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D ++M  A++ ++    L      + C+IV    +I RG     T      HAE+ A+ +
Sbjct: 4   DEKYMKQAIKQAKKAYALDEV--PIGCVIVAGDKIIARGYNRRNTDKNPLAHAELSAIRK 61

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A ++         T YVTLEPC        CA  I++  I RVV+   +P    +G
Sbjct: 62  ASKKTGDWRLEECTMYVTLEPCQM------CAGAIVQARIPRVVIGAMNPKAGCAG 111


>gi|303234521|ref|ZP_07321158.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Finegoldia magna BVS033A4]
 gi|302494355|gb|EFL54124.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Finegoldia magna BVS033A4]
          Length = 155

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 64/158 (40%), Gaps = 21/158 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D +FM  A+  +R    L      V C+IVK+G +I +      T      HAE++A+ +
Sbjct: 5   DEKFMIKAIEQARIAFDLDEV--PVGCVIVKNGEIIAQAYNSVETDNNATMHAELKAINQ 62

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +          T YVTLEPC        C   ++   I +VV    D      G  L 
Sbjct: 63  ATQVIGNFRLDNCTMYVTLEPCVM------CTGALVYSRIPKVVFGAFDKKRGACGSLLS 116

Query: 118 WLSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSH 151
               +G    I V  +ME E    + ++  R  EK  +
Sbjct: 117 LNDYEGLNHKIEVKSIMEKECVELMQSFFRRIREKNKN 154


>gi|291295391|ref|YP_003506789.1| tRNA(Ile)-lysidine synthetase [Meiothermus ruber DSM 1279]
 gi|290470350|gb|ADD27769.1| tRNA(Ile)-lysidine synthetase [Meiothermus ruber DSM 1279]
          Length = 521

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 17/112 (15%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
            S D   M +AL  +R  +   +    +  ++V DG V+               HAE+ A
Sbjct: 377 ESEDLEHMRSALEQAR--LAQQAGEVPIGAVVVWDGEVLAEAHNQVEQQCDATAHAELLA 434

Query: 60  LEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           L++A  +       GAT YVTLEPC      P C   ++E  +RRVV  V++
Sbjct: 435 LQQALHKRHSKVLPGATVYVTLEPC------PMCFGALMEAQVRRVVYAVEN 480


>gi|159794935|pdb|2NX8|A Chain A, The Crystal Structure Of The Trna-Specific Adenosine
          Deaminase From Streptococcus Pyogenes
          Length = 179

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 40/89 (44%), Gaps = 12/89 (13%)

Query: 1  MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
          MP S      FM  AL+ S     L      + C+IVKDG +IGRG  A         HA
Sbjct: 9  MPYSLEEQTYFMQEALKESE--KSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHA 66

Query: 56 EVQALEEAGEEARG-----ATAYVTLEPC 79
          E+ A+ EA            T +VT+EPC
Sbjct: 67 EMMAINEANAHEGNWRLLDTTLFVTIEPC 95


>gi|260437836|ref|ZP_05791652.1| tRNA-specific adenosine deaminase [Butyrivibrio crossotus DSM 2876]
 gi|292809861|gb|EFF69066.1| tRNA-specific adenosine deaminase [Butyrivibrio crossotus DSM 2876]
          Length = 157

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 64/157 (40%), Gaps = 27/157 (17%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
           FM  A+R ++    L      + C+IV DG +I RG     T      HAE+ A++ A +
Sbjct: 7   FMKEAIRQAKKAEKLNEV--PIGCVIVYDGKIIARGYNRRNTDKSTLAHAEIIAIKRASK 64

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                     T YVTLEPC        CA  I++  I +VV+   +     +G  +  L 
Sbjct: 65  VIKDWRLEDCTLYVTLEPCQM------CAGAIVQARIPKVVIGTMNSKAGCAGSVINVLQ 118

Query: 121 Q----------KGIIVDRMMESEGKIFLHAYLTRQVE 147
                      KG++ D   E     F +    +++E
Sbjct: 119 MKEFNHQVDICKGVLADECKEMMQNFFRNLREKKKME 155


>gi|219682367|ref|YP_002468751.1| riboflavin reductase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|219622100|gb|ACL30256.1| riboflavin reductase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|311086188|gb|ADP66270.1| riboflavin reductase [Buchnera aphidicola str. LL01 (Acyrthosiphon
           pisum)]
 gi|311086764|gb|ADP66845.1| riboflavin reductase [Buchnera aphidicola str. TLW03 (Acyrthosiphon
           pisum)]
 gi|311087352|gb|ADP67432.1| riboflavin reductase [Buchnera aphidicola str. JF99 (Acyrthosiphon
           pisum)]
 gi|311087852|gb|ADP67931.1| riboflavin reductase [Buchnera aphidicola str. JF98 (Acyrthosiphon
           pisum)]
          Length = 214

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 88/213 (41%), Gaps = 39/213 (18%)

Query: 166 MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS------- 218
           M    S  IT   ++  V   RA+S  IL    T+L+D+P L  R   L + +       
Sbjct: 1   MRNGDSKWITSKQARQDVQKFRAKSSVILSSSSTILSDNPLLNVRYKELDKKTLSIFPNK 60

Query: 219 ----PMRIILDPHFKLSLDSKIIKTA-------LLAPVIIVTENDDPVLALAFRKKNINI 267
               P+R+I+D   ++     IIKT        L +   I  +N   ++     KK INI
Sbjct: 61  IFQHPIRVIIDSKNRVQPSHNIIKTKGKIWLIRLKSDRKIWPKNTTQIIEKDHNKK-INI 119

Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
                     LL  L    + ++ +E G+ ++   +NS L+D +I+Y +  ++G    P 
Sbjct: 120 F--------SLLKFLGQSEINNVWIEAGSTLSGFLLNSYLIDELIIYMAPKILGHEAKP- 170

Query: 328 PLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
                      +C+  +       L++  KN+C
Sbjct: 171 -----------LCMIYEKLKISNSLQFKFKNIC 192


>gi|300853298|ref|YP_003778282.1| tRNA-specific adenosine deaminase [Clostridium ljungdahlii DSM
           13528]
 gi|300433413|gb|ADK13180.1| tRNA-specific adenosine deaminase [Clostridium ljungdahlii DSM
           13528]
          Length = 145

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 27/118 (22%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG---------VTAYGGCPHAEVQAL 60
           FM  A+R ++   GL      V  +IVKD  +I            VTA     HAE+ A+
Sbjct: 4   FMLEAIRQAK--KGLKLGEVPVGAVIVKDNEIISSCHNLKETVGIVTA-----HAEMLAI 56

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           + A E        G + YVTLEPC      P CA  I++C I ++ +   DP +   G
Sbjct: 57  QNASEILSNWRLTGCSMYVTLEPC------PMCAGAILQCRINKLYIGTFDPTMGACG 108


>gi|217966083|ref|YP_002351761.1| tRNA-specific adenosine deaminase [Listeria monocytogenes HCC23]
 gi|217335353|gb|ACK41147.1| tRNA-specific adenosine deaminase [Listeria monocytogenes HCC23]
 gi|307572307|emb|CAR85486.1| tRNA-specific adenosine deaminase, putative [Listeria monocytogenes
           L99]
          Length = 156

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 21/137 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           +  ++V DG +IGR      T+     HAE+ A+++A +        GA  YVTLEPC  
Sbjct: 25  IGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPC-- 82

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P C+  I+   I +V     DP    +G  +  L          +   +ME E   
Sbjct: 83  ----PMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCEVEAGLMEKESSE 138

Query: 137 FLHAYLTRQVEKRSHIT 153
            L ++  + + KR+ + 
Sbjct: 139 MLKSFF-QDLRKRNKLN 154


>gi|114320177|ref|YP_741860.1| tRNA-adenosine deaminase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226571|gb|ABI56370.1| tRNA-adenosine deaminase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 164

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 50/115 (43%), Gaps = 15/115 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIG--RGVTAYGGCPHAEVQALEEA 63
           D R+M  AL  +          P  A L++ D  + +G  + +TA     HAEV AL  A
Sbjct: 15  DIRWMRRALALAD-QAEAAGEVPVGAVLVLDDREVAVGSNQPITARDPTAHAEVVALRRA 73

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           GE        G T YVTLEPC+       C   II   ++RVV    DP     G
Sbjct: 74  GEVLGAYRLSGTTLYVTLEPCTM------CIGAIIHARVKRVVFAASDPKTGACG 122


>gi|283481246|emb|CAZ69362.1| putative deoxycytidylate deaminase [Emiliania huxleyi virus 99B1]
          Length = 173

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)

Query: 47  TAYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           T Y    H+E  A+  A G    G T YVTL PC+       C + II+ GI  +V   D
Sbjct: 85  TKYPFVVHSEANAILNANGTSVNGCTMYVTLFPCNE------CTKLIIQSGICEIVYLDD 138

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMES 132
             D+      L+ L   G+ + +  ++
Sbjct: 139 YNDITTKTASLRMLQSAGVTIRKYKQT 165


>gi|159038151|ref|YP_001537404.1| CMP/dCMP deaminase zinc-binding [Salinispora arenicola CNS-205]
 gi|157916986|gb|ABV98413.1| CMP/dCMP deaminase zinc-binding [Salinispora arenicola CNS-205]
          Length = 162

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 69  GATAYVTLEPC-SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           GAT Y ++EPC S   R   C + I+  GIRRVV  + +P +     G + L   GI V
Sbjct: 76  GATLYSSMEPCTSRKSRPRTCTELILAAGIRRVVYALREPPLLAECHGTEVLRSSGIDV 134


>gi|160894462|ref|ZP_02075238.1| hypothetical protein CLOL250_02014 [Clostridium sp. L2-50]
 gi|156863773|gb|EDO57204.1| hypothetical protein CLOL250_02014 [Clostridium sp. L2-50]
          Length = 214

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 17/102 (16%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGE 65
           +M  A++ +         +  + C+IVKD  VI RG            HAE+ A+E+A +
Sbjct: 62  YMKKAIKLA--QKAYVQGDVPIGCVIVKDNKVIARGYNKRNLKKTTLAHAELLAIEQASK 119

Query: 66  E-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           +         T YVTLEPC        CA  I++  I +VV+
Sbjct: 120 KLGDWRLEDCTMYVTLEPCQM------CAGAIVQARIPKVVI 155


>gi|73852493|ref|YP_293777.1| putative deoxycytidylate deaminase [Emiliania huxleyi virus 86]
 gi|72415209|emb|CAI65446.1| putative deoxycytidylate deaminase [Emiliania huxleyi virus 86]
          Length = 173

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)

Query: 47  TAYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           T Y    H+E  A+  A G    G T YVTL PC+       C + II+ GI  +V   D
Sbjct: 85  TKYPFVVHSEANAILNANGTSVNGCTMYVTLFPCNE------CTKLIIQSGICEIVYLDD 138

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMES 132
             D+      L+ L   G+ + +  ++
Sbjct: 139 YNDITTKTASLRMLQSAGVTIRKYKQT 165


>gi|251791894|ref|YP_003006614.1| tRNA-specific adenosine deaminase [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533281|gb|ACS96527.1| tRNA-specific adenosine deaminase [Aggregatibacter aphrophilus
           NJ8700]
          Length = 174

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 16/110 (14%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALE 61
            D +FM  AL  +     L    P  A L+  +G +IG G    +       HAE+ AL 
Sbjct: 8   LDEKFMRHALMLADKAEALGEI-PVGAVLVSAEGEIIGEGWNLSIIDSDPTAHAEIVALR 66

Query: 62  EAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           + G+  +      AT YVTLEPC+       CA  I+   I+R+V    D
Sbjct: 67  QGGQRLQNYRLLNATLYVTLEPCTM------CAGAILHSRIKRLVFGAAD 110


>gi|212710654|ref|ZP_03318782.1| hypothetical protein PROVALCAL_01720 [Providencia alcalifaciens DSM
           30120]
 gi|212686735|gb|EEB46263.1| hypothetical protein PROVALCAL_01720 [Providencia alcalifaciens DSM
           30120]
          Length = 170

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 17/133 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           M  S  D  +M  AL  ++      +    V  L+VKD  ++  G    +  +    HAE
Sbjct: 1   MTQSEIDEYWMLQALELAK--KAQNAGEIPVGALLVKDNQLVATGWNHSIENHDPTAHAE 58

Query: 57  VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +  L++AG   +       T YVTLEPC        CA  +I   I RVV    D     
Sbjct: 59  IVTLKQAGTALQNYRLLDTTLYVTLEPCIM------CAGAMIHSRIGRVVYGAKDFKTGA 112

Query: 112 SGRGLQWLSQKGI 124
            G  +  +SQ G+
Sbjct: 113 CGSFINIMSQPGL 125


>gi|138893694|ref|YP_001124147.1| cytosine deaminase [Geobacillus thermodenitrificans NG80-2]
 gi|134265207|gb|ABO65402.1| Cytosine deaminase [Geobacillus thermodenitrificans NG80-2]
          Length = 161

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 20/136 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  +IV+DG VI R      T      HAE+ A+ EA +         AT YVTLEPC+ 
Sbjct: 27  IGAVIVQDGRVIARAHNLRETEQRAIAHAEILAIAEACQATGSWRLERATLYVTLEPCAM 86

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGKI 136
                 CA  I+   I RVV    DP    +G  +  L +     +  +   ++ SE   
Sbjct: 87  ------CAGAIVLSRIERVVFGASDPKGGCAGTLMNLLQESRFNHQADVTSGVLASECGS 140

Query: 137 FLHAYLTRQVEKRSHI 152
            L  +  R  E++ ++
Sbjct: 141 LLSDFFRRLRERKKNV 156


>gi|315652559|ref|ZP_07905540.1| cytidine/deoxycytidylate deaminase [Eubacterium saburreum DSM 3986]
 gi|315485188|gb|EFU75589.1| cytidine/deoxycytidylate deaminase [Eubacterium saburreum DSM 3986]
          Length = 157

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 17/127 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  F+  A++ ++    L+  +  + C+IV +  +I RG            HAE+ A+++
Sbjct: 4   DDYFLKEAVKQAK--KALSIGDVPIGCVIVFEDKIIARGYNRRNKDKSTLSHAEIIAIKK 61

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++         T Y+TLEPC      P CA  I++  I+R V+   +P    +G  L 
Sbjct: 62  ACKKMGDWRLEDCTMYITLEPC------PMCAGAIVQSRIKRAVLGAMNPKAGCAGSVLN 115

Query: 118 WLSQKGI 124
            L   G 
Sbjct: 116 ILQTDGF 122


>gi|229074082|ref|ZP_04207131.1| hypothetical protein bcere0024_110 [Bacillus cereus Rock4-18]
 gi|229094742|ref|ZP_04225750.1| hypothetical protein bcere0020_110 [Bacillus cereus Rock3-29]
 gi|229100808|ref|ZP_04231626.1| hypothetical protein bcere0019_200 [Bacillus cereus Rock3-28]
 gi|228682615|gb|EEL36674.1| hypothetical protein bcere0019_200 [Bacillus cereus Rock3-28]
 gi|228688680|gb|EEL42550.1| hypothetical protein bcere0020_110 [Bacillus cereus Rock3-29]
 gi|228709045|gb|EEL61169.1| hypothetical protein bcere0024_110 [Bacillus cereus Rock4-18]
          Length = 166

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 23/170 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ A++E
Sbjct: 6   DIYFMQLAIEEAKKAEEIQEV--PIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDE 63

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  + 
Sbjct: 64  ACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMN 117

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            L+ +       +V  ++E E    L  +  R++ K+     K+  S +N
Sbjct: 118 LLTDERFNHQCEVVTGVLEEECGTLLTNFF-RELRKKRKAIKKLEKSNEN 166


>gi|197119924|ref|YP_002140351.1| tRNA (adenosine-34) deaminase [Geobacter bemidjiensis Bem]
 gi|197089284|gb|ACH40555.1| tRNA (adenosine-34) deaminase [Geobacter bemidjiensis Bem]
          Length = 166

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  +IVKDG++I RG     +      HAE+ A+ +A ++       GAT YVTLEPC+ 
Sbjct: 27  IGAVIVKDGVIIARGHNLRESNQDPAAHAEMIAIRKAAKKLASWRLTGATLYVTLEPCTM 86

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 C   +I   + RVV    DP    +G
Sbjct: 87  ------CMGAVILSRLDRVVFGSYDPKGGAAG 112


>gi|15617060|ref|NP_240273.1| riboflavin reductase [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219681812|ref|YP_002468198.1| riboflavin reductase [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|257471514|ref|ZP_05635513.1| riboflavin reductase [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|20139386|sp|P57534|RIBD2_BUCAI RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|25403629|pir||G84983 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
           [imported] - Buchnera sp. (strain APS)
 gi|10039125|dbj|BAB13159.1| riboflavin reductase [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219624655|gb|ACL30810.1| riboflavin reductase [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
          Length = 207

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 88/213 (41%), Gaps = 39/213 (18%)

Query: 166 MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS------- 218
           M    S  IT   ++  V   RA+S  IL    T+L+D+P L  R   L + +       
Sbjct: 1   MRNGDSKWITSKQARQDVQKFRAKSSVILSSSSTILSDNPLLNVRYKELDKKTLSIFPNK 60

Query: 219 ----PMRIILDPHFKLSLDSKIIKTA-------LLAPVIIVTENDDPVLALAFRKKNINI 267
               P+R+I+D   ++     IIKT        L +   I  +N   ++     KK INI
Sbjct: 61  IFQHPIRVIIDSKNRVQPSHNIIKTKGKIWLIRLKSDRKIWPKNTTQIIEKDHNKK-INI 119

Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
                     LL  L    + ++ +E G+ ++   +NS L+D +I+Y +  ++G    P 
Sbjct: 120 F--------SLLKFLGQSEINNVWIEAGSTLSGFLLNSYLIDELIIYMAPKILGHEAKP- 170

Query: 328 PLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
                      +C+  +       L++  KN+C
Sbjct: 171 -----------LCMIYEKLKISNSLQFKFKNIC 192


>gi|37527198|ref|NP_930542.1| tRNA-specific adenosine deaminase [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786632|emb|CAE15694.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 173

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 60/145 (41%), Gaps = 22/145 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V D  +I  G    + A+    HAE+  L + GE  R       T YVTLEPC+ 
Sbjct: 29  VGAILVADNKIISEGWNQSIIAHDPTAHAEIIVLRKGGERLRNYRLINTTLYVTLEPCT- 87

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
                 CA  +I   I+R+V    D      G  +  L   G+     I   ++  E   
Sbjct: 88  -----MCAGAMIHSRIQRLVYGASDMKTGAVGSLVDILRHPGMNHQIDITSGVLAEECST 142

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQD 161
            L A+  ++  ++ H  LK A  Q 
Sbjct: 143 MLSAFFKQR--RQQHKALKAARKQQ 165


>gi|294140156|ref|YP_003556134.1| cytidine/deoxycytidylate deaminase family protein [Shewanella
           violacea DSS12]
 gi|293326625|dbj|BAJ01356.1| cytidine/deoxycytidylate deaminase family protein [Shewanella
           violacea DSS12]
          Length = 169

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 17/118 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
           + D  FMS A+  +  H         V  ++VK G VI  G    +  +    HAE+Q L
Sbjct: 2   ALDQHFMSMAMEMA--HKAEAVGEVPVGAVLVKHGQVISAGFNYCIGLHDPSAHAEMQCL 59

Query: 61  EEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            +AG+          T YVTLEPC+       CA  ++   I R+V    D     +G
Sbjct: 60  RQAGKVTENYRLLDTTLYVTLEPCA------MCAGAMVHSRIARLVFGAKDEKTGAAG 111


>gi|153001509|ref|YP_001367190.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica OS185]
 gi|151366127|gb|ABS09127.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica OS185]
          Length = 174

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 44/92 (47%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++VKDG+ I  G    ++ +    HAE+  L EAG   E  R   AT YVTLEPC+ 
Sbjct: 34  VGAVLVKDGLQIATGYNLSISQHDPSAHAEILCLREAGRLVENYRLLDATLYVTLEPCA- 92

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 CA  ++   I RVV    D     +G
Sbjct: 93  -----MCAGAMVHSRIARVVFGARDEKTGAAG 119


>gi|23493630|dbj|BAC18599.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 292

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 9/132 (6%)

Query: 186 LRAQSDAILVGIGTVLADD--------PELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
           LRA SD +LVG  TV A+D             R    Q+  P   ++     L   S+  
Sbjct: 113 LRAWSDVVLVGASTVRAEDYGGVVIGEAGREARRRRGQQPVPPIAVISSSLDLDPGSRFF 172

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
             A  AP IIVT+N DP      +     I+      +  ++  L   G   +  EGGA+
Sbjct: 173 TEAAAAP-IIVTDNTDPSRLAGLQAAGARILQVGTLGVGLVVDKLRQEGFARISCEGGAS 231

Query: 298 VAHSFINSRLVD 309
           V    I++ ++D
Sbjct: 232 VYAQMIDAGVID 243


>gi|322514212|ref|ZP_08067274.1| tRNA-specific adenosine deaminase [Actinobacillus ureae ATCC 25976]
 gi|322119905|gb|EFX91914.1| tRNA-specific adenosine deaminase [Actinobacillus ureae ATCC 25976]
          Length = 196

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 16/115 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           + +S+ D  FM  AL  +     +    P  A LI  DG +IG G    +       HAE
Sbjct: 34  LAISAQDIHFMQYALALADRAEAIDEI-PVGAVLIDSDGNIIGEGWNQVIQLADPSAHAE 92

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           + A+ +AG+        G T YVTLEPC+       CA  I+   + R+V    D
Sbjct: 93  MLAIRQAGKVQNNYRLLGCTLYVTLEPCT------MCAGAILHSRLHRLVFGASD 141


>gi|225849713|ref|YP_002729947.1| tRNA-specific adenosine deaminase [Persephonella marina EX-H1]
 gi|225645628|gb|ACO03814.1| tRNA-specific adenosine deaminase [Persephonella marina EX-H1]
          Length = 154

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 15/80 (18%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  +IVKDG +IG+G    +       HAE+ A+EEA          G T YVT+EPC  
Sbjct: 26  IGAVIVKDGEIIGKGHNQRIEKNNALYHAEIVAIEEACRNTGSWRLDGCTLYVTVEPCVM 85

Query: 82  YGRSPPCAQFIIECGIRRVV 101
                 CA  I++  I++VV
Sbjct: 86  ------CAGAIMQSRIKKVV 99


>gi|158334126|ref|YP_001515298.1| cytosine/adenosine deaminase [Acaryochloris marina MBIC11017]
 gi|158304367|gb|ABW25984.1| Cytosine/adenosine deaminase [Acaryochloris marina MBIC11017]
          Length = 150

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 16/101 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65
           FM AA++ ++   GL +    +  ++VK+G ++GRG    V       HAE+ ALE  G 
Sbjct: 6   FMDAAIQEAQR--GLAAGGIPIGSVVVKNGTIVGRGHNLRVQQGSAILHAEMSALETLGR 63

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           +     +  T Y TL PCS       C   I+   I RVV+
Sbjct: 64  QPAMFYQDVTLYTTLSPCSM------CTGAILLYKIPRVVI 98


>gi|332534515|ref|ZP_08410352.1| tRNA-specific adenosine-34 deaminase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036083|gb|EGI72560.1| tRNA-specific adenosine-34 deaminase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 171

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 17/124 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI----GRGVTAYGGCPHAEVQALEE 62
           D+ +M  AL +++    L    P V  ++VKD  +I     R +T      HAE+ A+ E
Sbjct: 7   DSYWMEQALLYAK-QAELLDEIP-VGAIVVKDNQLISVGYNRSITDNDPSAHAEMIAVRE 64

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AG+          T YVTLEPCS       CA  ++   I+R+V    D     +G  + 
Sbjct: 65  AGKVLNNYRLIDCTLYVTLEPCSM------CAGLLVHSRIKRLVFGALDAKTGSAGSIMN 118

Query: 118 WLSQ 121
            L +
Sbjct: 119 LLQE 122


>gi|190347436|gb|EDK39700.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 150

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 18/125 (14%)

Query: 29  PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA----RGATAYVTLEPCS 80
           P    LI +DG V+GRG            H E+  LE AG       +  T Y TL PCS
Sbjct: 26  PIGGALISEDGTVLGRGHNLRFQKDSATLHGEISTLENAGRLKGSVYKNCTMYTTLSPCS 85

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
                  C+   I  G++RVVV  ++  +        W+ + GI V  +   E K  +  
Sbjct: 86  M------CSGACIMYGVKRVVVGENETFMGAE----DWIRKSGIEVVNLNNQECKDLMAK 135

Query: 141 YLTRQ 145
           ++  +
Sbjct: 136 FIKER 140


>gi|260890091|ref|ZP_05901354.1| hypothetical protein GCWU000323_01253 [Leptotrichia hofstadii
           F0254]
 gi|260860114|gb|EEX74614.1| putative deoxycytidylate deaminase [Leptotrichia hofstadii F0254]
          Length = 161

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 36/126 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGV--------------- 46
           S+D  FM  A        G+ S +PS    AC+I +D  +IG G                
Sbjct: 9   SWDEYFMGIAFL-----SGMRSKDPSTQVGACIIDEDKKIIGIGYNGFPMGSSDDSMPWG 63

Query: 47  -------TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                  T Y    HAE+ A+  + +  +  T YVT  PC+       CA+ I++ GI++
Sbjct: 64  KEGEFLETKYPYVVHAELNAILNSIKSLKKCTIYVTHFPCNE------CAKAIVQSGIKK 117

Query: 100 VVVCVD 105
           V+   D
Sbjct: 118 VIYFSD 123


>gi|229194412|ref|ZP_04321217.1| hypothetical protein bcere0001_100 [Bacillus cereus m1293]
 gi|228589068|gb|EEK47081.1| hypothetical protein bcere0001_100 [Bacillus cereus m1293]
          Length = 166

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 23/170 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ A++E
Sbjct: 6   DIHFMQLAIEEAKKAEAIQEV--PIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDE 63

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  + 
Sbjct: 64  ACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMN 117

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            L+ +       +V  ++E E    L  +  R + K+     K+  S++N
Sbjct: 118 LLTDERFNHQCEVVAGVLEEECGTLLTNFF-RALRKKRKAIKKLEKSKEN 166


>gi|225026664|ref|ZP_03715856.1| hypothetical protein EUBHAL_00916 [Eubacterium hallii DSM 3353]
 gi|224956034|gb|EEG37243.1| hypothetical protein EUBHAL_00916 [Eubacterium hallii DSM 3353]
          Length = 178

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 17/111 (15%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
           M   + D +FM  A++ ++    +      + C+IV DG +I RG            HAE
Sbjct: 6   MRKYTEDEKFMKEAIKQAKKAEAIGDV--PIGCVIVHDGKIIARGYNKRNKDKTVLAHAE 63

Query: 57  VQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           + A+++A ++         T Y+TLEPC        CA  I++  + RVV+
Sbjct: 64  LLAMKKACKKLGDWRLEDCTMYITLEPCQ------MCAGAIVQARVTRVVI 108


>gi|52424459|ref|YP_087596.1| hypothetical protein MS0404 [Mannheimia succiniciproducens MBEL55E]
 gi|52306511|gb|AAU37011.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 176

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 16/111 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
           SFD + M+ AL  +     L    P  A L+ + G +IG G    +       HAE+ AL
Sbjct: 6   SFDEKMMNRALFLADKAEALGEI-PVGAVLVDERGNIIGEGWNLSIVNSDPTAHAEIIAL 64

Query: 61  EEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
             A ++ +       T YVTLEPC+       CA  I+   I+R+V    D
Sbjct: 65  RNAAQKIQNYRLLNTTLYVTLEPCT------MCAGAILHSRIKRLVFGASD 109


>gi|239623044|ref|ZP_04666075.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522411|gb|EEQ62277.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 202

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 17/127 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  FM  A+R +  H      +  + C+IV+ G +I RG            HAE+ +++ 
Sbjct: 54  DEGFMGEAIRQA--HKAAALGDVPIGCVIVRQGQIIARGYNRRNADKSVLSHAEIISIKR 111

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++         T YVTLEPC      P C+  I++  I RVV+   +     +G  L 
Sbjct: 112 ACKKLGDWRLEDCTMYVTLEPC------PMCSGAIVQARIPRVVIGCMNAKAGCAGSVLD 165

Query: 118 WLSQKGI 124
            L + G 
Sbjct: 166 LLHEPGF 172


>gi|148269654|ref|YP_001244114.1| CMP/dCMP deaminase, zinc-binding [Thermotoga petrophila RKU-1]
 gi|170288329|ref|YP_001738567.1| CMP/dCMP deaminase zinc-binding [Thermotoga sp. RQ2]
 gi|281411636|ref|YP_003345715.1| CMP/dCMP deaminase zinc-binding protein [Thermotoga naphthophila
           RKU-10]
 gi|147735198|gb|ABQ46538.1| CMP/dCMP deaminase, zinc-binding [Thermotoga petrophila RKU-1]
 gi|170175832|gb|ACB08884.1| CMP/dCMP deaminase zinc-binding [Thermotoga sp. RQ2]
 gi|281372739|gb|ADA66301.1| CMP/dCMP deaminase zinc-binding protein [Thermotoga naphthophila
           RKU-10]
          Length = 169

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 32/58 (55%), Gaps = 9/58 (15%)

Query: 54  HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE  AL +A   G    GAT YVT +PCS       CA+ I+  GI+RVV   D PD
Sbjct: 96  HAEQNALMQAAKFGIAVNGATIYVTHKPCS------ICARLIVNAGIKRVVYEKDYPD 147


>gi|255023462|ref|ZP_05295448.1| tRNA-specific adenosine deaminase [Listeria monocytogenes FSL
           J1-208]
          Length = 156

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           +  ++V DG +IGR      T+     HAE+ A+++A +        GA  YVTLEPC  
Sbjct: 25  IGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPC-- 82

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
               P C+  I+   I +V     DP    +G
Sbjct: 83  ----PMCSGAILLSRIEKVYYGAKDPKAGTAG 110


>gi|29826479|ref|NP_828785.1| putative riboflavin-specific deaminase/reductase [Streptomyces
           avermitilis MA-4680]
 gi|29611277|dbj|BAC75320.1| putative riboflavin-specific deaminase/reductase [Streptomyces
           avermitilis MA-4680]
          Length = 226

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 79/182 (43%), Gaps = 9/182 (4%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R ++ L  A+S D  +       + ++     ++V  +RA+SDAIL+G  T+  D+P L 
Sbjct: 4   RPYVLLSAAMSVDGYLDDTSPERLRLSNAEDFDRVDQVRAESDAILIGANTMRRDNPRLL 63

Query: 209 C--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
                    R+   +   P+++ +     LS D           V+ V    + V A   
Sbjct: 64  VNSDERRAQRVADGKPEYPLKVTVTQSGDLSADLNFWHHGGDKLVVTVDSAVEKVRATLG 123

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
              ++  +  +  D   +L  L  RGV  L+VEGG  +    + + L D + L  + +++
Sbjct: 124 DLADVVGVGPEL-DWGLVLDELGRRGVGRLMVEGGGTIHTQLMAANLADEVHLAIAPLLV 182

Query: 321 GE 322
           G+
Sbjct: 183 GQ 184


>gi|330995533|ref|ZP_08319436.1| putative ComE operon protein 2 [Paraprevotella xylaniphila YIT
           11841]
 gi|329575313|gb|EGG56858.1| putative ComE operon protein 2 [Paraprevotella xylaniphila YIT
           11841]
          Length = 149

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 49/119 (41%), Gaps = 36/119 (30%)

Query: 5   SFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53
             D R+    LR +R W          V  LIVKD ++I  G   Y G P          
Sbjct: 10  ELDLRY----LRMARIWAENSYCERRKVGALIVKDKMIISDG---YNGTPAGFENVCEDE 62

Query: 54  ---------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                    HAE  A+ +   +G  + GAT YVT  PC        C++ II+ GI++V
Sbjct: 63  NHLTKPYVLHAEANAITKIARSGNNSEGATLYVTDAPCIE------CSKLIIQSGIKKV 115


>gi|322418061|ref|YP_004197284.1| CMP/dCMP deaminase zinc-binding protein [Geobacter sp. M18]
 gi|320124448|gb|ADW12008.1| CMP/dCMP deaminase zinc-binding protein [Geobacter sp. M18]
          Length = 162

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 44/92 (47%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           +  +IVKDG VI RG     +      HAE+ A+ +A ++       GAT YVTLEPC+ 
Sbjct: 27  IGAVIVKDGAVIARGHNLRESKQDPAAHAELIAIRKAAKKLSSWRLTGATLYVTLEPCTM 86

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 C   II   + RVV    DP    +G
Sbjct: 87  ------CMGAIILSRLDRVVFGSYDPKGGAAG 112


>gi|288942407|ref|YP_003444647.1| CMP/dCMP deaminase protein [Allochromatium vinosum DSM 180]
 gi|288897779|gb|ADC63615.1| CMP/dCMP deaminase zinc-binding protein [Allochromatium vinosum DSM
           180]
          Length = 166

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 17/126 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  +M  AL  +R           V  ++V++G ++G G    +  +    HAE+QAL +
Sbjct: 9   DVHWMRHALELAR--CAAEEGEVPVGAVLVREGEILGEGWNRPIIRHDPSAHAEIQALRD 66

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AG         G+  YVTLEPC        CA  I+   + +V+    DP     G    
Sbjct: 67  AGRRVGNYRLPGSILYVTLEPCVM------CAGAIVHARVAQVIYGAPDPKAGACGSVFD 120

Query: 118 WLSQKG 123
            L   G
Sbjct: 121 LLPSDG 126


>gi|116874087|ref|YP_850868.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing
           protein [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116742965|emb|CAK22089.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 156

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           +  ++V DG +IGR      T+     HAE+ A+++A +        GA  YVTLEPC  
Sbjct: 25  IGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPC-- 82

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
               P C+  I+   I +V     DP    +G
Sbjct: 83  ----PMCSGAILLSRIEKVYYGAKDPKAGTAG 110


>gi|270291666|ref|ZP_06197882.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          sp. M143]
 gi|270279751|gb|EFA25592.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          sp. M143]
          Length = 155

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64
          FM  ALR +   + L      + C+IVK+G +IGRG  A         HAE+ A+E A  
Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKNGEIIGRGHNAREELQRAVMHAEIMAIENANA 68

Query: 65 -EEAR---GATAYVTLEPC 79
           EE+      T +VT+EPC
Sbjct: 69 SEESWRLLDCTLFVTIEPC 87


>gi|257464722|ref|ZP_05629093.1| tRNA-adenosine deaminase [Actinobacillus minor 202]
 gi|257450382|gb|EEV24425.1| tRNA-adenosine deaminase [Actinobacillus minor 202]
          Length = 150

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 15/87 (17%)

Query: 29  PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPC 79
           P  A L+ K G ++G G    +       HAE+QA+  AG+  +       T YVTLEPC
Sbjct: 18  PVGAVLVDKSGKIVGEGWNRSIILSDPTAHAEIQAIRMAGQHLQNYRLLDTTLYVTLEPC 77

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDD 106
                 P CA  I+   I R+V    D
Sbjct: 78  ------PMCAGAILHSRIGRLVFGASD 98


>gi|110597776|ref|ZP_01386060.1| CMP/dCMP deaminase, zinc-binding [Chlorobium ferrooxidans DSM
           13031]
 gi|110340683|gb|EAT59163.1| CMP/dCMP deaminase, zinc-binding [Chlorobium ferrooxidans DSM
           13031]
          Length = 153

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 21/135 (15%)

Query: 29  PSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
           P  A ++  +G VIGRG            HAE+ AL  A      +     T  VT+EPC
Sbjct: 25  PVGAVIVDSNGHVIGRGYNQVESLCDATAHAEMIALTSAMATIGNKYLEDCTLAVTMEPC 84

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG-----RGLQWLSQKGIIVDRMMESEG 134
                 P CA  I+   + RVV    DP +  SG      G Q L+ +  +   +ME++ 
Sbjct: 85  ------PMCAGAIVNAKVGRVVFGAYDPKMGASGTVMNITGCQQLNHQPEVYGGIMENKC 138

Query: 135 KIFLHAYLTRQVEKR 149
           +  L  +  R++ K+
Sbjct: 139 RTLLQDFF-RELRKK 152


>gi|88703683|ref|ZP_01101399.1| Cytidine and deoxycytidylate deaminase [Congregibacter litoralis
           KT71]
 gi|88702397|gb|EAQ99500.1| Cytidine and deoxycytidylate deaminase [Congregibacter litoralis
           KT71]
          Length = 167

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 40/80 (50%), Gaps = 11/80 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE 65
           FM+ AL+ ++      +    V  L+V+DG ++G G  A  G      HAE+ AL  A  
Sbjct: 24  FMARALQLAK--EAAEAGEVPVGALVVQDGRILGEGRNAQIGATDPTAHAEINALRAAAS 81

Query: 66  -----EARGATAYVTLEPCS 80
                   GAT YVTLEPCS
Sbjct: 82  ALDNYRMPGATLYVTLEPCS 101


>gi|306828458|ref|ZP_07461653.1| tRNA-specific adenosine deaminase [Streptococcus mitis ATCC 6249]
 gi|304429257|gb|EFM32342.1| tRNA-specific adenosine deaminase [Streptococcus mitis ATCC 6249]
          Length = 155

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG- 64
          FM  ALR +   + L      + C+IVKDG +I RG  A         HAE+ A+E A  
Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKDGEIISRGHNAREELQRAVMHAEIMAIENANL 68

Query: 65 -EEAR---GATAYVTLEPC 79
           EE+      T +VT+EPC
Sbjct: 69 SEESWRLLDCTLFVTIEPC 87


>gi|282164705|ref|YP_003357090.1| cytosine deaminase [Methanocella paludicola SANAE]
 gi|282157019|dbj|BAI62107.1| cytosine deaminase [Methanocella paludicola SANAE]
          Length = 145

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 16/101 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65
           FM AAL  ++   GL      +  ++V DG+++GRG    V       HAE+  LE AG 
Sbjct: 4   FMRAALDEAK--KGLREGGIPIGSVLVVDGVIVGRGHNRRVQQGSTIKHAEMDCLESAGR 61

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                 R +T Y TL PC        C+  ++  GI +VV+
Sbjct: 62  LRAATYRKSTLYSTLSPCDM------CSGAVLLYGIPKVVI 96


>gi|307544360|ref|YP_003896839.1| cytosine deaminase [Halomonas elongata DSM 2581]
 gi|307216384|emb|CBV41654.1| cytosine deaminase [Halomonas elongata DSM 2581]
          Length = 152

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 16/101 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65
           FM AAL  +R   GL      +  ++V  G+++G G    V       H E+ ALE AG 
Sbjct: 4   FMQAALDEAR--AGLDEGGIPIGSVLVHRGVILGGGRNRRVQLGSTVLHGEMDALENAGR 61

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           ++    R +T Y TL PC+       C   I+  GI RVV+
Sbjct: 62  QSADIYRESTLYTTLSPCAM------CTGAILLYGIPRVVI 96


>gi|149237721|ref|XP_001524737.1| DRAP deaminase [Lodderomyces elongisporus NRRL YB-4239]
 gi|146451334|gb|EDK45590.1| DRAP deaminase [Lodderomyces elongisporus NRRL YB-4239]
          Length = 622

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 54/118 (45%), Gaps = 11/118 (9%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEAG 64
           ++ ++M  AL  +R   G T T  +V C++V DG VI  G +    G  HAE  ALE+  
Sbjct: 454 YNRKYMEMALDEAR-KCGETQTQFNVGCVLVLDGEVISTGHSRELEGNTHAEQCALEKYF 512

Query: 65  EE-------ARGATAYVTLEPCS-HYGRSPPCAQFIIEC-GIRRVVVCVDDPDVRVSG 113
            +         G   Y T+EPCS     + PC   I+    I    V V +PDV V  
Sbjct: 513 AKNGGIRDVPLGTELYTTMEPCSLRLSGNLPCVDRILALPNITACFVGVMEPDVFVKN 570


>gi|331696725|ref|YP_004332964.1| bifunctional deaminase-reductase domain-containing protein
           [Pseudonocardia dioxanivorans CB1190]
 gi|326951414|gb|AEA25111.1| bifunctional deaminase-reductase domain protein [Pseudonocardia
           dioxanivorans CB1190]
          Length = 256

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 74/175 (42%), Gaps = 19/175 (10%)

Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN 212
           +L  AVS D + G  G GS        K    +LR  +D +LVG GTV A+      R  
Sbjct: 41  SLDGAVSVDGLSG--GLGSA-----ADKAVFGVLRRLADVVLVGAGTVRAEGYRGARRPT 93

Query: 213 -GLQEHSPMRII-----LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
            G     P+ ++     LDP  +L  D+ +      AP+++ T         A R    +
Sbjct: 94  VGRALPPPIAVVTGSAGLDPGARLFTDTAV------APIVLTTAGAPGERRDALRAAGAD 147

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           ++         LL  L  RG+  +L EGG A+  +   +  VD + L  S  ++G
Sbjct: 148 VVELPDLAPPTLLAELGRRGLHRVLCEGGPALHGALAAADAVDELCLTLSPTLVG 202


>gi|255941100|ref|XP_002561319.1| Pc16g10090 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585942|emb|CAP93679.1| Pc16g10090 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 148

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 18/127 (14%)

Query: 29  PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG----EEARGATAYVTLEPCS 80
           P  A L+ KDG ++GRG    V       HAE+ ALE +G        GAT Y TL PC 
Sbjct: 24  PIGAALVSKDGKILGRGHNMRVQKGSAVLHAEMSALENSGRLPASAYEGATMYTTLSPCD 83

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
                  C    I   ++RVV+  +   +     G + L  KG  V  +  +E K F+  
Sbjct: 84  M------CTGACILYKVKRVVIGENKNFM----GGEELLLNKGKEVVVLDNAECKEFMTK 133

Query: 141 YLTRQVE 147
           ++  + E
Sbjct: 134 FMKEKPE 140


>gi|242372784|ref|ZP_04818358.1| deaminase [Staphylococcus epidermidis M23864:W1]
 gi|242349557|gb|EES41158.1| deaminase [Staphylococcus epidermidis M23864:W1]
          Length = 168

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 68/165 (41%), Gaps = 23/165 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  +M  A++ +R    L      +  +IVKD  VI R      T      HAE  A+E 
Sbjct: 4   DNDYMRLAIKEARKAQELGEV--PIGAVIVKDNHVIARAHNLRETLQQPTAHAEHIAIER 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A E          T YVTLEPC        CA  I+   I RVV    DP    +G  + 
Sbjct: 62  ASEVIGSWRLEDCTLYVTLEPCVM------CAGAIVMSRIPRVVYGAIDPKGGCTGSLMN 115

Query: 118 WLSQ-----KGIIVDRMMESEGKIFLHAYLTR-QVEKRSHITLKI 156
            L+Q     + I+   ++E+E    L  +    + +KRS    KI
Sbjct: 116 LLAQPQFNHRAIVESGILENECSTLLREFFKNIRQQKRSLKQAKI 160


>gi|114775692|ref|ZP_01451260.1| cytosine deaminase [Mariprofundus ferrooxydans PV-1]
 gi|114553803|gb|EAU56184.1| cytosine deaminase [Mariprofundus ferrooxydans PV-1]
          Length = 145

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 16/102 (15%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64
           +F+ AA+  +R   G+      +  ++V DG ++GRG    V       HAE+  LE+AG
Sbjct: 3   KFLRAAIDEARQ--GMAEGGIPIGSVLVIDGEIVGRGHNRRVQQGSAVLHAEMDCLEQAG 60

Query: 65  E----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                + R AT Y TL PC        C+  ++  GI RVVV
Sbjct: 61  RLTAADYRRATLYSTLSPCDM------CSGAVLLYGIPRVVV 96


>gi|212224167|ref|YP_002307403.1| carbon-monoxide dehydrogenase, catalytic subunit [Thermococcus
           onnurineus NA1]
 gi|212009124|gb|ACJ16506.1| carbon-monoxide dehydrogenase, catalytic subunit [Thermococcus
           onnurineus NA1]
          Length = 630

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 3/134 (2%)

Query: 34  LIVKDGIVIGRGVTAYGGCPHAEV--QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQF 91
           LI +D +V+G G        H  +  +A E AG   +     + + PC H G    C++ 
Sbjct: 467 LIKRDILVVGTGCWGIAAAMHGLLTPEAAEMAGPGLKAVCEALGIPPCLHMGSCVDCSRI 526

Query: 92  IIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSH 151
           ++        + VD  D+ V+G   +W+S+K + +     + G +F H  +   V     
Sbjct: 527 LLVLSALANALNVDISDLPVAGSAPEWMSEKAVAIGTYFVASG-VFTHLGVIPPVLGSQK 585

Query: 152 ITLKIAVSQDNMIG 165
           +T  +    ++++G
Sbjct: 586 VTKLLTDDIEDLLG 599


>gi|300853441|ref|YP_003778425.1| cytidine deaminase [Clostridium ljungdahlii DSM 13528]
 gi|300433556|gb|ADK13323.1| cytidine deaminase [Clostridium ljungdahlii DSM 13528]
          Length = 136

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 7/51 (13%)

Query: 54  HAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           HAEV  L E A ++   +T YVT  PC      P C + II CGI+RVV C
Sbjct: 69  HAEVNCLLEVAPDDRESSTLYVTHMPC------PECQKLIITCGIKRVVYC 113


>gi|282877407|ref|ZP_06286230.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella buccalis ATCC 35310]
 gi|281300459|gb|EFA92805.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella buccalis ATCC 35310]
          Length = 146

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 47/119 (39%), Gaps = 36/119 (30%)

Query: 6   FDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            D R+    LR +R W          V  L+VK  ++I  G   Y G P           
Sbjct: 9   LDQRY----LRMARIWAENSYCHRRQVGALVVKGNMIISDG---YNGTPSGFDNVCEDEN 61

Query: 54  --------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                   HAE  A   L  +   + G+T YVT  PC        CA+ II+ GI+RVV
Sbjct: 62  GVTHPYVLHAEANAITKLARSSNNSDGSTLYVTASPC------IECAKLIIQAGIKRVV 114


>gi|283769499|ref|ZP_06342395.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bulleidia extructa W1219]
 gi|283103767|gb|EFC05153.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bulleidia extructa W1219]
          Length = 157

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 18/103 (17%)

Query: 47  TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           T Y    HAE+ A+  +    +  T YV+L PC+       CA+ II+ GIRRVV   D 
Sbjct: 66  TKYPYVVHAELNAILNSKWPVKDCTIYVSLFPCNE------CAKAIIQSGIRRVVYESD- 118

Query: 107 PDVRVSGRGLQWLSQKGIIVDRMMESEGK--IFLHAYLTRQVE 147
              + +G      ++  I   RM+ES G   I L   ++ QVE
Sbjct: 119 ---KYNG------TEMNIASKRMLESAGVELIKLPYSMSLQVE 152


>gi|229113696|ref|ZP_04243133.1| Uncharacterized deaminase yaaJ [Bacillus cereus Rock1-3]
 gi|228669762|gb|EEL25167.1| Uncharacterized deaminase yaaJ [Bacillus cereus Rock1-3]
          Length = 166

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 21/146 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  +IV DG VI        T      HAE+ A++EA +         AT YVTLEPC  
Sbjct: 28  IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDEACKNLGTWRLEDATLYVTLEPC-- 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P CA  I+   ++RVV    DP    +G  +  L+ +       +V  ++E E   
Sbjct: 86  ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVTGVLEEECGT 141

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDN 162
            L  +  R++ K+     K+  S +N
Sbjct: 142 LLTNFF-RELRKKRKAIKKLENSNEN 166


>gi|21672527|ref|NP_660594.1| hypothetical protein BUsg246 [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25091621|sp|Q8K9R4|Y246_BUCAP RecName: Full=Uncharacterized protein BUsg_246
 gi|21623150|gb|AAM67805.1| hypothetical 20.0 kDa protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 151

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 17/116 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59
           S+ D+ +M  AL+++ ++       P  A L+ ++ I IG G    ++      HAE+ A
Sbjct: 3   SNRDSYWMKIALKYA-YYAEENGEVPIGAILVFQEKI-IGTGWNSVISQNDSTAHAEIIA 60

Query: 60  LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           L EAG   +       T YVTL+PC        C   II   I+R+V      D++
Sbjct: 61  LREAGRNIKNYRLVNTTLYVTLQPCMM------CCGAIINSRIKRLVFGASYKDLK 110


>gi|170718532|ref|YP_001783741.1| CMP/dCMP deaminase zinc-binding [Haemophilus somnus 2336]
 gi|168826661|gb|ACA32032.1| CMP/dCMP deaminase zinc-binding [Haemophilus somnus 2336]
          Length = 166

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 25/165 (15%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59
           S FD + M  AL  +     L    P  A L+ K G ++  G    +       HAE+ A
Sbjct: 3   SDFDEKMMRYALSLADKAEALGEI-PVGAVLVDKQGDILAEGWNLSIIHNDPTAHAEIIA 61

Query: 60  LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           L +AG++ +       T YVTLEPC+       CA  I+   I R+V    D      G 
Sbjct: 62  LRQAGQKLQNYRLLDTTLYVTLEPCT------MCAGAILHSRIGRLVFGAYDYKTGAVGS 115

Query: 115 GLQWLSQKGIIVDRMMESEGKIF-------LHAYLTRQVEKRSHI 152
              + +   +  + M+E  G +        +  +  ++ +++ H+
Sbjct: 116 RFHFFNDYKM--NHMLEITGGVLQEECSQKISTFFQKRRKQKKHL 158


>gi|303251559|ref|ZP_07337733.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|303252205|ref|ZP_07338373.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302648988|gb|EFL79176.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302649557|gb|EFL79739.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 174

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           + +S  D  FM  AL  +     +    P  A L+ ++G +IG G    +       HAE
Sbjct: 12  LTISEQDIHFMRYALELADRAEAIGEI-PVGAVLVDQEGNIIGEGWNQVIQLSDPSAHAE 70

Query: 57  VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           + A+ +AG+  R       T YVTLEPC+       CA  I+   +RR+V    D
Sbjct: 71  MLAIRQAGKVQRNYRLLDCTLYVTLEPCT------MCAGAILHSRLRRLVFGASD 119


>gi|283779562|ref|YP_003370317.1| CMP/dCMP deaminase zinc-binding protein [Pirellula staleyi DSM
           6068]
 gi|283438015|gb|ADB16457.1| CMP/dCMP deaminase zinc-binding protein [Pirellula staleyi DSM
           6068]
          Length = 160

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 16/110 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           M    +D  F+ AA+  +R +V      P    ++VK+G +IGRG     ++     HAE
Sbjct: 1   MTSPHYDHEFLEAAIELARENVRSGKGGP-FGSVVVKEGKIIGRGENRVTSSLDPSAHAE 59

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           + A+ +A ++ +     G T Y + +PC      P C   I    I RVV
Sbjct: 60  IVAIRDACQQQQNFSLAGTTIYASCQPC------PMCLSAIYWSRIDRVV 103


>gi|269126013|ref|YP_003299383.1| bifunctional deaminase-reductase domain-containing protein
           [Thermomonospora curvata DSM 43183]
 gi|268310971|gb|ACY97345.1| bifunctional deaminase-reductase domain protein [Thermomonospora
           curvata DSM 43183]
          Length = 229

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 5/143 (3%)

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRA +D ++VG GTV A+         G Q  +P   I+     L LDS +        V
Sbjct: 57  LRAMADVVIVGAGTVRAEG--YGPVRPGPQGQAPPLAIVSRRLDLDLDSPVFTEPKARTV 114

Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           ++  +   P  L  A R   + +   D  D  + +  L  RG   LL EGG AV      
Sbjct: 115 LLTVQAAPPERLRAAERVAEVIMAGEDGIDFSRAVRELAARGHRRLLCEGGPAVLARAAA 174

Query: 305 SRLVDSIILYRSQIVIGEGGIPS 327
             ++D + L  S +++   G PS
Sbjct: 175 DGVLDELCLTLSPMLV--AGDPS 195


>gi|126139263|ref|XP_001386154.1| DRAP deaminase [Scheffersomyces stipitis CBS 6054]
 gi|126093436|gb|ABN68125.1| DRAP deaminase [Scheffersomyces stipitis CBS 6054]
          Length = 585

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 9/113 (7%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEAGEEA 67
           +FM  +L  +      T T  +V  ++V  G V+  G +    G  HAE  ALE+  EE 
Sbjct: 435 KFMELSLEMAN-KCDETQTQYNVGAVLVNRGKVLATGHSRELPGNTHAEQCALEKYFEET 493

Query: 68  ------RGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 +G   Y T+EPC+     + PCA  II   I+   V + +PD  V  
Sbjct: 494 GKREIPKGTEIYTTMEPCTLRLSGNIPCADRIIGTTIKTCFVGIVEPDTFVKN 546


>gi|150021636|ref|YP_001306990.1| CMP/dCMP deaminase, zinc-binding [Thermosipho melanesiensis BI429]
 gi|149794157|gb|ABR31605.1| CMP/dCMP deaminase, zinc-binding [Thermosipho melanesiensis BI429]
          Length = 170

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 9/58 (15%)

Query: 54  HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE  AL +A   G     +T Y+T +PCS       CA+ II  GI+RVV   D PD
Sbjct: 94  HAEQNALMQAAKFGISTNNSTMYITHKPCS------VCARLIINAGIKRVVFINDYPD 145


>gi|295398379|ref|ZP_06808419.1| cytidine/deoxycytidylate deaminase [Aerococcus viridans ATCC 11563]
 gi|294973332|gb|EFG49119.1| cytidine/deoxycytidylate deaminase [Aerococcus viridans ATCC 11563]
          Length = 175

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 57/144 (39%), Gaps = 20/144 (13%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           +  ++V  G +IGRG     T+     HAE+ A+ EA           A  YVTLEPC  
Sbjct: 38  IGAVVVYQGEIIGRGHNLRETSQDATTHAEILAIREANRNRASWRLADADLYVTLEPC-- 95

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P C+  +I+  IR V     D     +G  +  L          ++  +M  E K 
Sbjct: 96  ----PMCSGAMIQSRIRHVYFGAYDQKGGTAGTLMNLLDDSRFNHQVEVIGGVMHEECKA 151

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQ 160
            L  +     +KR + + K  V  
Sbjct: 152 LLQDFFIELRKKRKNSSRKPKVEN 175


>gi|225378688|ref|ZP_03755909.1| hypothetical protein ROSEINA2194_04358 [Roseburia inulinivorans DSM
           16841]
 gi|225209525|gb|EEG91879.1| hypothetical protein ROSEINA2194_04358 [Roseburia inulinivorans DSM
           16841]
          Length = 161

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 47/146 (32%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53
           S+D  FM  A+       G+ S +P+    AC++  D  ++  G   Y G P        
Sbjct: 10  SWDEYFMGVAML-----TGMRSKDPNTQVGACIVSADHKILSMG---YNGLPTGCSDDEF 61

Query: 54  -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                            H+E+ A L   G    G+T YV+L PC+       CA+ II+ 
Sbjct: 62  PWGREGAPLENKYLFTTHSELNAILNYRGGSLEGSTIYVSLFPCNE------CAKAIIQA 115

Query: 96  GIRRVVVCVDD----PDVRVSGRGLQ 117
           GI+R+V   D     P V  S R L+
Sbjct: 116 GIKRIVYDSDKYDGTPSVVASKRMLK 141


>gi|238750377|ref|ZP_04611878.1| tRNA-specific adenosine deaminase [Yersinia rohdei ATCC 43380]
 gi|238711308|gb|EEQ03525.1| tRNA-specific adenosine deaminase [Yersinia rohdei ATCC 43380]
          Length = 195

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V D  VIG G    +       HAE+ AL + G+  +      AT YVTLEPC  
Sbjct: 54  VGAILVLDNQVIGEGWNRPIRNNDPTAHAEIMALRQGGQAVQNYRLIDATLYVTLEPCVM 113

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  ++   IRR+V   +D     +G  L  L   G+
Sbjct: 114 ------CAGAMVHSRIRRLVYGANDLKTGAAGSLLDILRHPGM 150


>gi|304384459|ref|ZP_07366862.1| competence protein ComEB [Prevotella marshii DSM 16973]
 gi|304334453|gb|EFM00743.1| competence protein ComEB [Prevotella marshii DSM 16973]
          Length = 147

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 47/119 (39%), Gaps = 36/119 (30%)

Query: 6   FDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            D R+    LR +R W          V  L+VKD ++I  G   Y G P           
Sbjct: 10  LDLRY----LRMARIWAENSYCQRRKVGALVVKDKMIISDG---YNGTPSGFENICEDED 62

Query: 54  --------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                   HAE  A   L  +   +  +T YVT  PC        C++ II+ GI+RVV
Sbjct: 63  NTTKPYVLHAEANAITKLARSSNNSDNSTLYVTASPCIE------CSKLIIQAGIKRVV 115


>gi|282897517|ref|ZP_06305518.1| Cytidine/deoxycytidylate deaminase, zinc-binding region protein
           [Raphidiopsis brookii D9]
 gi|281197612|gb|EFA72507.1| Cytidine/deoxycytidylate deaminase, zinc-binding region protein
           [Raphidiopsis brookii D9]
          Length = 185

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 18/112 (16%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAEVQAL 60
           +   +MS AL+ ++  +   +    V C+IV   G +IG+G            HAE+ A+
Sbjct: 16  YHQGWMSEALKLAQ--IAGDAGEVPVGCIIVNSQGDLIGQGENRKQRDQDPTAHAEIVAI 73

Query: 61  EEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
             A    +       T YVTLEPC      P CA  II   ++ +V  VDDP
Sbjct: 74  RSAARTLQNWHLDQCTLYVTLEPC------PMCAGAIIHARLQTLVYAVDDP 119


>gi|117919687|ref|YP_868879.1| tRNA-adenosine deaminase [Shewanella sp. ANA-3]
 gi|117612019|gb|ABK47473.1| tRNA-adenosine deaminase [Shewanella sp. ANA-3]
          Length = 222

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 15/98 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++VK G  I  G    ++ +  C HAE+Q L  AG+          T YVTLEPC+ 
Sbjct: 81  VGAVLVKGGQQIAAGYNLSISEHDPCAHAEIQCLRAAGQTIENYRLLDTTLYVTLEPCAM 140

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                 CA  ++   I RVV    D     +G  L  L
Sbjct: 141 ------CAGAMVHSRIARVVFGAKDEKTGAAGTVLNLL 172


>gi|320547592|ref|ZP_08041877.1| tRNA-specific adenosine deaminase [Streptococcus equinus ATCC
          9812]
 gi|320447667|gb|EFW88425.1| tRNA-specific adenosine deaminase [Streptococcus equinus ATCC
          9812]
          Length = 168

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
          FM  AL+ ++    L      + C+IVKDG +IGRG  A         HAE+ A+ EA E
Sbjct: 12 FMREALKEAQ--KSLEKEEIPIGCVIVKDGEIIGRGHNAREEQQKAILHAEIMAINEANE 69

Query: 66 EARG-----ATAYVTLEPC 79
                   +  +VT+EPC
Sbjct: 70 NEGNWRLLDSMLFVTIEPC 88


>gi|304413544|ref|ZP_07395017.1| CMP/dCMP deaminase [Candidatus Regiella insecticola LSR1]
 gi|304284387|gb|EFL92780.1| CMP/dCMP deaminase [Candidatus Regiella insecticola LSR1]
          Length = 181

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 16/94 (17%)

Query: 29  PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPC 79
           P  A L++++ I IG G    +  +    HAE+ AL +AG++ +      AT YVTLEPC
Sbjct: 49  PVGAVLVLQNKI-IGEGWNQPIIHHDPSAHAEIMALRQAGQQQKNYRLPDATLYVTLEPC 107

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                   CA  +I   I R+V   +D  +   G
Sbjct: 108 VM------CAGAMIHSRISRLVYGANDNKIGAVG 135


>gi|218132702|ref|ZP_03461506.1| hypothetical protein BACPEC_00563 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992428|gb|EEC58431.1| hypothetical protein BACPEC_00563 [Bacteroides pectinophilus ATCC
           43243]
          Length = 160

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 23/126 (18%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------TAYGGCPHAEVQA 59
           D ++M  A++ +R    +  +   + C+IV    +I RG        T  G   HAE+ A
Sbjct: 9   DEKYMKEAIKQARKAYKIGES--PIGCVIVYQNKIIARGYNRRNIDKTTLG---HAEITA 63

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           + +A +          T YVTLEPC        CA  I++  I RVV+   +P    +G 
Sbjct: 64  IRKASKVIGDWRLEDCTIYVTLEPCQM------CAGAIVQARIPRVVIGAMNPKAGCAGS 117

Query: 115 GLQWLS 120
            L  L 
Sbjct: 118 VLNLLE 123


>gi|126729047|ref|ZP_01744861.1| deoxycytidylate deaminase [Sagittula stellata E-37]
 gi|126710037|gb|EBA09089.1| deoxycytidylate deaminase [Sagittula stellata E-37]
          Length = 152

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 28/111 (25%)

Query: 21  HVGLTSTNPS--VACLIVKDG---IVIG-----RGV-----------TAYGGCPHAEVQA 59
           HV   S +PS  V C++V +    + +G     RGV           T Y    HAE  A
Sbjct: 21  HVATASRDPSTKVGCILVDEQRRLVGMGYNGFPRGVVDLPERYEDRPTKYLMVQHAEANA 80

Query: 60  -LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
            L+       G+TAY+T  PCS+      CA  +I+ G++RVV    +PD+
Sbjct: 81  VLQSPSNSLAGSTAYLTAPPCSN------CAGLLIQAGVKRVVSLGCNPDL 125


>gi|46143725|ref|ZP_00134574.2| COG0590: Cytosine/adenosine deaminases [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208056|ref|YP_001053281.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           L20]
 gi|126096848|gb|ABN73676.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 189

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           + +S  D  FM  AL  +     +    P  A L+ ++G +IG G    +       HAE
Sbjct: 27  LTISEQDIHFMRYALELADRAEAIGEI-PVGAVLVDQEGNIIGEGWNQVIQLSDPSAHAE 85

Query: 57  VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           + A+ +AG+  R       T YVTLEPC+       CA  I+   +RR+V    D
Sbjct: 86  MLAIRQAGKVQRNYRLLDCTLYVTLEPCT------MCAGAILHSRLRRLVFGASD 134


>gi|297572271|ref|YP_003698045.1| CMP/dCMP deaminase zinc-binding protein [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296932618|gb|ADH93426.1| CMP/dCMP deaminase zinc-binding protein [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 143

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE- 65
           M  A+  +R   G     P  A ++  DG VIGRG          C HAEV AL EA   
Sbjct: 1   MHEAMEIAR-RAGADGDVPVGAVILGPDGGVIGRGWNTREADADPCGHAEVNALREAARA 59

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                  G T  VTLEPC+       CA  I+   + RVV    D     +G
Sbjct: 60  LGRWNLSGCTLVVTLEPCTM------CAGAIVNSRVSRVVFGAWDAKAGAAG 105


>gi|218438113|ref|YP_002376442.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 7424]
 gi|218170841|gb|ACK69574.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 7424]
          Length = 147

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 14/99 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65
           FM AA+  +R   GL      +  ++VKDG ++GRG    V       HAE+  L  AG 
Sbjct: 8   FMQAAIAEARQ--GLQEGGIPIGSVLVKDGKILGRGHNKRVQDNDPVTHAEIDCLRNAGR 65

Query: 66  --EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
             + +    Y TL PC        CA  +++ GI++V+ 
Sbjct: 66  VGQYQDTILYSTLMPCY------LCAGAVVQFGIKKVIA 98


>gi|328952357|ref|YP_004369691.1| CMP/dCMP deaminase zinc-binding protein [Desulfobacca acetoxidans
           DSM 11109]
 gi|328452681|gb|AEB08510.1| CMP/dCMP deaminase zinc-binding protein [Desulfobacca acetoxidans
           DSM 11109]
          Length = 167

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 16/113 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59
            + D  +M  A+  ++    L    P  A +I K G +IG+G    + ++    HAE+ A
Sbjct: 17  EAIDQAYMCLAIGEAKKASSLQEV-PVGAVVIDKAGKIIGQGHNQPIASHDPSAHAEIVA 75

Query: 60  LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           L +A   +R       T YVTLEPC        C   +++  +RR+V   DDP
Sbjct: 76  LRQASACSRNYRLPDCTMYVTLEPCIM------CIGAVLQARLRRLVYGADDP 122


>gi|257058547|ref|YP_003136435.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC
           8802]
 gi|256588713|gb|ACU99599.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC
           8802]
          Length = 181

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           D+KKL++ L  +G  +L ++GG  V  SF+   L+D II+ R  I++G+G
Sbjct: 94  DIKKLISQLNQKGYNNLYIDGGQ-VIQSFLQEDLIDEIIITRVPIILGQG 142


>gi|153952715|ref|YP_001393480.1| hypothetical protein CKL_0054 [Clostridium kluyveri DSM 555]
 gi|219853386|ref|YP_002470508.1| hypothetical protein CKR_0043 [Clostridium kluyveri NBRC 12016]
 gi|146345596|gb|EDK32132.1| TadA [Clostridium kluyveri DSM 555]
 gi|219567110|dbj|BAH05094.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 145

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 15/86 (17%)

Query: 31  VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++VK+  +I R      T      HAE+ A+  A +  +       + YVTLEPC  
Sbjct: 23  VGAVVVKNNNIISRAYNLKETLKDSTAHAEILAIRSASKVVKNWRLKDCSMYVTLEPC-- 80

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDP 107
               P CA  I++C I R+ +   DP
Sbjct: 81  ----PMCAGAILQCRISRLYIGTFDP 102


>gi|325286502|ref|YP_004262292.1| CMP/dCMP deaminase zinc-binding protein [Cellulophaga lytica DSM
           7489]
 gi|324321956|gb|ADY29421.1| CMP/dCMP deaminase zinc-binding protein [Cellulophaga lytica DSM
           7489]
          Length = 146

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 36/139 (25%)

Query: 9   RFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53
           ++  A LR ++ W          V  +IVKD ++I  G   Y G P              
Sbjct: 14  KYDEAYLRMAQEWGKLSYCKRKQVGAIIVKDRMIISDG---YNGTPTGFENICEDEEGYT 70

Query: 54  -----HAEVQALEEAGEEAR---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE  A+ +     +   GAT Y+TL PC        C++ I + GI RVV    
Sbjct: 71  KWYVLHAEANAISKVASSTQSCTGATLYITLSPCKE------CSKLIHQSGIVRVVY--- 121

Query: 106 DPDVRVSGRGLQWLSQKGI 124
             +      GL++L + GI
Sbjct: 122 -QNAYKDDSGLKFLEKAGI 139


>gi|294669183|ref|ZP_06734263.1| tRNA-specific adenosine deaminase [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308815|gb|EFE50058.1| tRNA-specific adenosine deaminase [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 246

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 23/124 (18%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC-------PH 54
           P +   ARFM  AL   +      +    V  ++V++G V+    TA+  C        H
Sbjct: 87  PPAEEAARFMQLALH--QAEAAAAAGEVPVGAVVVRNGEVLS---TAHNRCVADCDIGSH 141

Query: 55  AEVQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AE++AL EAG +       G   Y+TLEPC+       CA  +I+  + RVV    +P  
Sbjct: 142 AELRALAEAGRQTGSYRLDGCDVYITLEPCAM------CASALIQARVARVVYGAAEPKS 195

Query: 110 RVSG 113
             +G
Sbjct: 196 GAAG 199


>gi|296123852|ref|YP_003631630.1| CMP/dCMP deaminase zinc-binding protein [Planctomyces limnophilus
           DSM 3776]
 gi|296016192|gb|ADG69431.1| CMP/dCMP deaminase zinc-binding protein [Planctomyces limnophilus
           DSM 3776]
          Length = 166

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 46/108 (42%), Gaps = 17/108 (15%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
           R+M  AL  ++           +  +IVKD  +IG              HAE+ A+ +A 
Sbjct: 18  RWMRQALDLAQ--QAFAEEEVPIGAVIVKDDQIIGAAWNQREQLKDPTAHAEIVAITQAA 75

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           E          T YVTLEPC      P CA  I++  I RVV  + DP
Sbjct: 76  EVIGDWRLEDCTLYVTLEPC------PMCAGAIVQARIPRVVYGITDP 117


>gi|206603205|gb|EDZ39685.1| Putative zinc-binding cytidine/deoxycytidylate deaminase
           [Leptospirillum sp. Group II '5-way CG']
          Length = 162

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 16/118 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
           + D R+M+ AL  ++  +      P  A L+  +G V+GRG    + +     HAE+ AL
Sbjct: 10  NMDERWMTEALSEAKTAMKKNEI-PIGALLVDGNGTVLGRGHNQRIGSMDPTAHAEIVAL 68

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
             +G   +     G T YVT+EPC        C   ++E  +  VV  + +P   V+G
Sbjct: 69  RSSGLHVKNYRLPGTTLYVTVEPCLM------CFGALLEARVETVVFGIREPRWGVTG 120


>gi|324324011|gb|ADY19271.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing
           protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 166

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 23/170 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ A++E
Sbjct: 6   DIYFMQLAIEEAKKAEAIQEV--PIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDE 63

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  + 
Sbjct: 64  ACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMN 117

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            L+ +       +V  ++E E    L  +  R + K+     K+  S++N
Sbjct: 118 LLTDERFNHQCEVVAGVLEEECGTLLTNFF-RALRKKRKAIKKLEKSKEN 166


>gi|313889859|ref|ZP_07823501.1| cytidine and deoxycytidylate deaminase zinc-binding region
          [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121904|gb|EFR45001.1| cytidine and deoxycytidylate deaminase zinc-binding region
          [Streptococcus pseudoporcinus SPIN 20026]
          Length = 174

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
          FM  AL+ +     L      + C+IVKDG +IGRG  A         HAE+ A+ EA  
Sbjct: 12 FMREALKEA--EKSLVKAEIPIGCVIVKDGKIIGRGHNAREELNQAIMHAEIMAINEANA 69

Query: 66 EARG-----ATAYVTLEPC 79
            +       + +VT+EPC
Sbjct: 70 HEKNWRLLETSLFVTIEPC 88


>gi|17541138|ref|NP_502546.1| hypothetical protein JC8.4 [Caenorhabditis elegans]
 gi|6425182|emb|CAB05231.1| C. elegans protein JC8.4, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 176

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 20/117 (17%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQ 58
           +S+ D  F+  A   +     L      V C+ V +G  IGRG       G P  HAE+ 
Sbjct: 6   LSAEDTAFLEKAFELA--QEALDEDEVPVGCVFVVNGTEIGRGRNRVNETGDPTRHAEMV 63

Query: 59  ALEEAGEEA--------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           A+ E  +E         + +T YV+LEPC        C+  + + GIR++V   ++P
Sbjct: 64  AVTEMWKEHGTGCEDLLKKSTLYVSLEPCIM------CSSAMYQLGIRKMVYGAENP 114


>gi|238762806|ref|ZP_04623775.1| tRNA-specific adenosine deaminase [Yersinia kristensenii ATCC
           33638]
 gi|238699111|gb|EEP91859.1| tRNA-specific adenosine deaminase [Yersinia kristensenii ATCC
           33638]
          Length = 194

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V D  VIG G     G      HAE+ AL + G+  +      AT YVTLEPC  
Sbjct: 52  VGAILVLDNQVIGEGWNRSIGDNDPTAHAEIMALRQGGQAVQNYRLIDATLYVTLEPCVM 111

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  ++   IRR+V   +D     +G  +  L   G+
Sbjct: 112 ------CAGAMVHSRIRRLVYGANDLKTGAAGSLVDILRHPGM 148


>gi|332519190|ref|ZP_08395657.1| CMP/dCMP deaminase, zinc-binding [Lacinutrix algicola 5H-3-7-4]
 gi|332045038|gb|EGI81231.1| CMP/dCMP deaminase, zinc-binding [Lacinutrix algicola 5H-3-7-4]
          Length = 143

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 60/144 (41%), Gaps = 36/144 (25%)

Query: 9   RFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53
           ++  A LR ++ W          V  LIVKD ++I  G   + G P              
Sbjct: 8   KYDKAYLRIAQEWGKLSHCKRKQVGALIVKDRMIISDG---FNGTPTGFENPCEDEEGYT 64

Query: 54  -----HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE  A+     + +   GAT Y+TL PC        C++ I + GI RVV    
Sbjct: 65  KWYVLHAEANAILKVASSTQSCNGATLYITLSPCKE------CSKLIHQAGIIRVVYKEG 118

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRM 129
             D      GL++L + GI ++R+
Sbjct: 119 YKD----DSGLRFLEKAGIEIERI 138


>gi|313900948|ref|ZP_07834438.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Clostridium sp. HGF2]
 gi|312954368|gb|EFR36046.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Clostridium sp. HGF2]
          Length = 151

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 17/107 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65
           +M AALR +     +      + C+IVKD  +I RG     T      HAE+ A+++A +
Sbjct: 5   YMRAALREAEKAKKIDEV--PIGCVIVKDDKIIARGHNLRETKQQSINHAEIIAIQKACK 62

Query: 66  EA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           +           YVTLEPC        CA  I++  IR V+    DP
Sbjct: 63  KVGSWRLEDCDLYVTLEPCCM------CAGAILQSRIRTVIYGTADP 103


>gi|120600291|ref|YP_964865.1| CMP/dCMP deaminase, zinc-binding [Shewanella sp. W3-18-1]
 gi|120560384|gb|ABM26311.1| CMP/dCMP deaminase, zinc-binding [Shewanella sp. W3-18-1]
          Length = 497

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 14/99 (14%)

Query: 46  VTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           +T YG   HAE++AL  A   G    GAT Y T  PC +      CA+ I+  G+ +VV 
Sbjct: 337 ITEYGRAVHAEMEALMSAARTGISVLGATLYTTTFPCHN------CAKHIVAAGVGKVVF 390

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
               P    +      L    I VDR    E K+  + +
Sbjct: 391 IEPYPKSFATK-----LHSDSIKVDRFNGDETKVHFYPF 424


>gi|306834459|ref|ZP_07467572.1| tRNA-specific adenosine deaminase [Streptococcus bovis ATCC
          700338]
 gi|304423261|gb|EFM26414.1| tRNA-specific adenosine deaminase [Streptococcus bovis ATCC
          700338]
          Length = 168

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
          FM  AL+ ++    L      + C+IVK+G +IGRG  A         HAE+ A+++A E
Sbjct: 12 FMREALKEAQ--KSLAKEEIPIGCVIVKNGDIIGRGHNAREERQKAILHAEIMAIDDANE 69

Query: 66 EARG-----ATAYVTLEPC 79
                   +T +VT+EPC
Sbjct: 70 NEGNWRLLDSTLFVTIEPC 88


>gi|227486589|ref|ZP_03916905.1| nucleoside deaminase [Anaerococcus lactolyticus ATCC 51172]
 gi|227235407|gb|EEI85422.1| nucleoside deaminase [Anaerococcus lactolyticus ATCC 51172]
          Length = 158

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 52/110 (47%), Gaps = 17/110 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG---CPHAEVQALEE 62
           D  FM+ A+  ++    +    P  A ++  D IV GRG    Y G     HAE+ AL+E
Sbjct: 9   DKFFMTEAINEAKLAKSIDEV-PIGAVVVCGDRIV-GRGHNFTYKGKSALNHAEIYALKE 66

Query: 63  AGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           AG+          T YVTLEPC        CA  I+   ++R+V+   DP
Sbjct: 67  AGKNIGDFRLEECTMYVTLEPCLM------CAGAIMHSRVKRLVIACKDP 110


>gi|307153713|ref|YP_003889097.1| bifunctional deaminase-reductase domain-containing protein
           [Cyanothece sp. PCC 7822]
 gi|306983941|gb|ADN15822.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC
           7822]
          Length = 227

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 76/195 (38%), Gaps = 13/195 (6%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA----- 202
           KR H  + +A++ D  I      +        KN +    AQ DA+L G GT+ A     
Sbjct: 2   KRPHTLVVLAMTADGKIADKHSSAARFGSDADKNHLETQIAQVDAVLFGAGTLRAYHTSF 61

Query: 203 --DDPE-LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
              +PE L  R    +   P+ I+      L+ + +  + + L   ++ T   +      
Sbjct: 62  PISNPELLQWRKQQHKPPQPVHIVCSASGNLNPEMRFFRQS-LPRWLLTTHRGENTWQQT 120

Query: 260 FRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
             +    I+  D  D +    K        G+  L + GG  +  S + + L+D   L  
Sbjct: 121 NSEGFERILKADDLDNRINWLKAFEQFTTLGLEKLAILGGGGLVASLLEAALIDEFYLTL 180

Query: 316 SQIVIGEGGIPSPLE 330
             +++G    P+P+E
Sbjct: 181 CPLLLGGTDAPTPVE 195


>gi|60688555|gb|AAX30382.1| SJCHGC03167 protein [Schistosoma japonicum]
 gi|226479958|emb|CAX73275.1| putative 6030466N05Rik protein [Schistosoma japonicum]
          Length = 98

 Score = 41.2 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 7/76 (9%)

Query: 54  HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           HAE+ A+    E  +RG T Y T+ PC+       CA+ II+ GI+ VV   D  +   S
Sbjct: 15  HAELNAVLNRNEAHSRGCTLYSTMFPCNE------CAKVIIQAGIKEVVYHSDKKNRTAS 68

Query: 113 GRGLQWLSQKGIIVDR 128
            +  ++L +K  I  R
Sbjct: 69  NQAAKYLFKKAGISMR 84


>gi|325860320|ref|ZP_08173442.1| putative dCMP deaminase [Prevotella denticola CRIS 18C-A]
 gi|325482199|gb|EGC85210.1| putative dCMP deaminase [Prevotella denticola CRIS 18C-A]
          Length = 170

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 52/130 (40%), Gaps = 35/130 (26%)

Query: 20  WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------------HAEVQA- 59
           W          V  L+VK+ ++I  G   Y G P                   HAE  A 
Sbjct: 35  WAENSYCKRRQVGALVVKNKMIISDG---YNGTPSGFENVCEDEAGVTKSYVLHAEANAI 91

Query: 60  --LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
             L  +G  + G+T YVT  PC        CA+ II+ GI RVV        R++  G+ 
Sbjct: 92  TKLARSGNNSEGSTLYVTASPC------IECAKLIIQAGISRVVYA---EKYRLTD-GID 141

Query: 118 WLSQKGIIVD 127
            L + GI V+
Sbjct: 142 LLKRAGIEVE 151


>gi|238926636|ref|ZP_04658396.1| dCMP deaminase [Selenomonas flueggei ATCC 43531]
 gi|238885582|gb|EEQ49220.1| dCMP deaminase [Selenomonas flueggei ATCC 43531]
          Length = 158

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 42/157 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53
           S+D  FM  AL FS +     S +P     AC++ +D  ++G G   Y G P        
Sbjct: 4   SWDEYFMGVAL-FSAYR----SKDPHTQVGACIVNEDKHIVGVG---YNGMPNGCDDHEY 55

Query: 54  -----------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                            HAE+ A+  A    +G   Y +L PC+       C + II+ G
Sbjct: 56  PWGRTGEFAEQKYPYVVHAELNAILNASTSLKGCRIYTSLFPCNE------CCKAIIQSG 109

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
           IR V+   D      S +  + +     +  R ME+E
Sbjct: 110 IREVIYLSDKYATADSTKASKRMLASANVTCRRMETE 146


>gi|228472740|ref|ZP_04057498.1| cytidine/deoxycytidylate deaminase family protein [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228275791|gb|EEK14557.1| cytidine/deoxycytidylate deaminase family protein [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 150

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 65/159 (40%), Gaps = 38/159 (23%)

Query: 1   MPVSSFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------ 53
           +P      R+  A +R ++ W     S    V  +IVKD ++I  G   Y G P      
Sbjct: 2   LPDMEKQERYDRAYMRMAQEWAKLSYSQRKQVGAIIVKDRMIISDG---YNGTPTGFDNC 58

Query: 54  -------------HAEVQALEEAGEEAR---GATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                        HAE  A+ +     +   GAT Y+T+ PC        C++ I + GI
Sbjct: 59  CEDAQGDTLWYVLHAEANAILKVAASTQSCAGATLYITMSPCRE------CSKLIHQAGI 112

Query: 98  RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME--SEG 134
            RVV      D      G+++L + G+ +  + E  SEG
Sbjct: 113 VRVVY----KDSYRDTSGIEFLEKAGVEILHLPETSSEG 147


>gi|161485975|ref|NP_738399.2| hypothetical protein CE1789 [Corynebacterium efficiens YS-314]
 gi|259507401|ref|ZP_05750301.1| riboflavin specific deaminase [Corynebacterium efficiens YS-314]
 gi|259165026|gb|EEW49580.1| riboflavin specific deaminase [Corynebacterium efficiens YS-314]
          Length = 235

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 9/132 (6%)

Query: 186 LRAQSDAILVGIGTVLADD--------PELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
           LRA SD +LVG  TV A+D             R    Q+  P   ++     L   S+  
Sbjct: 56  LRAWSDVVLVGASTVRAEDYGGVVIGEAGREARRRRGQQPVPPIAVISSSLDLDPGSRFF 115

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
             A  AP IIVT+N DP      +     I+      +  ++  L   G   +  EGGA+
Sbjct: 116 TEAAAAP-IIVTDNTDPSRLAGLQAAGARILQVGTLGVGLVVDKLRQEGFARISCEGGAS 174

Query: 298 VAHSFINSRLVD 309
           V    I++ ++D
Sbjct: 175 VYAQMIDAGVID 186


>gi|88813490|ref|ZP_01128725.1| zinc-binding domain protein [Nitrococcus mobilis Nb-231]
 gi|88789280|gb|EAR20412.1| zinc-binding domain protein [Nitrococcus mobilis Nb-231]
          Length = 181

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 55/127 (43%), Gaps = 19/127 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQ 58
           VS  D  FM+ AL  +R           V  ++V+   V+G G    +       HAE++
Sbjct: 22  VSDQDQAFMARALELARR--AQAHGEVPVGAVVVQRERVVGEGYNRPIATRDPTAHAEIE 79

Query: 59  ALEEAGEEARGA------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           AL  AG+ A GA      T YVTLEPC+       C   +I   + R+V    DP     
Sbjct: 80  ALRAAGQ-ALGAYRLPATTLYVTLEPCAM------CVGALIHARVARLVFGAHDPKTGAC 132

Query: 113 GRGLQWL 119
           G  L+ +
Sbjct: 133 GGALRLI 139


>gi|325577729|ref|ZP_08148004.1| tRNA-specific adenosine deaminase [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160474|gb|EGC72600.1| tRNA-specific adenosine deaminase [Haemophilus parainfluenzae ATCC
           33392]
          Length = 172

 Score = 41.2 bits (95), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 16/112 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59
           S  D +FM  AL  +     L    P  A L+  +G ++G G    +       HAE+ A
Sbjct: 3   SDLDEKFMQHALMLADRAEALGEI-PVGAVLVGDEGNILGEGWNLSIIENDPTAHAEIVA 61

Query: 60  LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           L  A +  +       T YVTLEPC+       CA  I+   I+R+V    D
Sbjct: 62  LRNAAQNIQNYRLLNTTLYVTLEPCTM------CAGAILHSRIKRLVFGASD 107


>gi|237748635|ref|ZP_04579115.1| tRNA-specific adenosine deaminase [Oxalobacter formigenes OXCC13]
 gi|229379997|gb|EEO30088.1| tRNA-specific adenosine deaminase [Oxalobacter formigenes OXCC13]
          Length = 171

 Score = 41.2 bits (95), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 20/126 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           V  ++V DG +I RG    +TA+    HAE+ AL  A              YVTLEPCS 
Sbjct: 25  VGAVVVLDGQIIARGFNQPITAHDPTAHAEIVALRNAARFCGNYRLPDCELYVTLEPCSM 84

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
                 C   +I   ++RV+    +P     G  +   +Q  +     +   ++E+E  +
Sbjct: 85  ------CVGAMIHARLKRVIFGAKEPRTGACGSIIDLFAQNELNHHTTVTGGVLENESSV 138

Query: 137 FLHAYL 142
            L  + 
Sbjct: 139 LLKTFF 144


>gi|229009532|ref|ZP_04166761.1| hypothetical protein bmyco0001_110 [Bacillus mycoides DSM 2048]
 gi|229131029|ref|ZP_04259944.1| hypothetical protein bcere0014_100 [Bacillus cereus BDRD-ST196]
 gi|228652424|gb|EEL08346.1| hypothetical protein bcere0014_100 [Bacillus cereus BDRD-ST196]
 gi|228751743|gb|EEM01540.1| hypothetical protein bmyco0001_110 [Bacillus mycoides DSM 2048]
          Length = 164

 Score = 41.2 bits (95), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 72/170 (42%), Gaps = 23/170 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ A++E
Sbjct: 4   DIYFMQLAIEEAKKAEAIQEV--PIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDE 61

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++        AT YVTLEPC      P CA  I+   I+RVV    DP    +G  + 
Sbjct: 62  ACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRIKRVVYGASDPKGGCAGTLMN 115

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            L+ +       +V  ++E E    L  +  R++ K+     K+  S  N
Sbjct: 116 LLTDERFNHQCEVVPGVLEEECGTLLTIFF-RELRKKRKEVKKLEKSNGN 164


>gi|165975988|ref|YP_001651581.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|190149887|ref|YP_001968412.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307247548|ref|ZP_07529592.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307252128|ref|ZP_07534027.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307256596|ref|ZP_07538377.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307261030|ref|ZP_07542712.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|307263211|ref|ZP_07544831.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|165876089|gb|ABY69137.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|189915018|gb|ACE61270.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306855913|gb|EFM88072.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306860428|gb|EFM92442.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306865006|gb|EFM96908.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306869332|gb|EFN01127.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306871428|gb|EFN03152.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 196

 Score = 41.2 bits (95), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           + +S  D  FM  AL  +     +    P  A L+ ++G +IG G    +       HAE
Sbjct: 34  LTISEQDIHFMRYALELADRAEAIGEI-PVGAVLVDQEGNIIGEGWNQVIQLSDPSAHAE 92

Query: 57  VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           + A+ +AG+  R       T YVTLEPC+       CA  I+   +RR+V    D
Sbjct: 93  MLAIRQAGKVQRNYRLLDCTLYVTLEPCTM------CAGAILHSRLRRLVFGASD 141


>gi|307154712|ref|YP_003890096.1| CMP/dCMP deaminase zinc-binding protein [Cyanothece sp. PCC 7822]
 gi|306984940|gb|ADN16821.1| CMP/dCMP deaminase zinc-binding protein [Cyanothece sp. PCC 7822]
          Length = 147

 Score = 41.2 bits (95), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 14/99 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65
           FM AA+  ++   GL      +  ++VKDG ++GRG    V       HAE+  L  AG 
Sbjct: 8   FMQAAIAEAKQ--GLQEGGIPIGSVLVKDGQIVGRGHNKRVQDNDPVTHAEIDCLRNAGR 65

Query: 66  EARGATA--YVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
             +   +  Y TL PC        CA  +++ GI+RV+ 
Sbjct: 66  IGQYGDSILYSTLMPCY------LCAGAVVQFGIKRVIA 98


>gi|329889978|ref|ZP_08268321.1| tRNA-specific adenosine deaminase [Brevundimonas diminuta ATCC
           11568]
 gi|328845279|gb|EGF94843.1| tRNA-specific adenosine deaminase [Brevundimonas diminuta ATCC
           11568]
          Length = 154

 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 44/88 (50%), Gaps = 17/88 (19%)

Query: 31  VACLIVKD--GIVIGRG----VTAYGGCPHAEVQALEEAGEEARGA-----TAYVTLEPC 79
           V  +IV +  G V+GRG    +TA+    HAE+ AL +A  + +       T YVTLEPC
Sbjct: 17  VGAVIVDENTGEVLGRGQNGPITAHDPSAHAEIVALRDAAAKLQNYRLTDLTLYVTLEPC 76

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           +       CA  I    I RVV   DDP
Sbjct: 77  AM------CAGAISHARIGRVVWGADDP 98


>gi|328768239|gb|EGF78286.1| hypothetical protein BATDEDRAFT_26851 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 156

 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 8/95 (8%)

Query: 51  GCPHAEVQALEEAG------EEARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVC 103
           G  HAE   L +A       +  R A  Y T+EPCS     + PC   +I+ GI +V++ 
Sbjct: 54  GNTHAEQVCLIKASHAGLDLDRMRDAIMYTTMEPCSLRLSGNLPCVNRLIDAGISKVLIG 113

Query: 104 V-DDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
           + + P++  +  G+Q L+  GI V  +   +G+ F
Sbjct: 114 ILEPPNLVENCSGVQMLTDAGIQVVHLTGFQGRSF 148


>gi|304390572|ref|ZP_07372525.1| cytidine/deoxycytidylate deaminase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326328|gb|EFL93573.1| cytidine/deoxycytidylate deaminase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 180

 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 17/121 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-----AYGGCPHAEV 57
           +SS + R +  A R ++   G     P  A ++  +GIV G G+       Y    HAE+
Sbjct: 29  LSSAEVRALDTAYRLAQ-KAGRAGDIPVGAVVLTPEGIVAGLGLNQRENPPYDPSAHAEI 87

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL EA         +G T   TLEPC+       CA  I+   I R++    DP     
Sbjct: 88  VALREAAGRLERWNLKGCTLVATLEPCTM------CAGAIVNARISRLIFGAWDPKAGAC 141

Query: 113 G 113
           G
Sbjct: 142 G 142


>gi|126666387|ref|ZP_01737366.1| bifunctional deaminase-reductase-like protein [Marinobacter sp.
           ELB17]
 gi|126629188|gb|EAZ99806.1| bifunctional deaminase-reductase-like protein [Marinobacter sp.
           ELB17]
          Length = 301

 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 73/149 (48%), Gaps = 10/149 (6%)

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            +H +RA SDA++VG GT +AD+P+LT R       +P+R+++D   ++     +  T  
Sbjct: 114 HLHRIRALSDAVVVGAGTAVADNPQLTVRRT--SGDNPVRVVIDRRRRVPASHHLF-TDN 170

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK-------KLLTILVGRGVTSLLVEG 294
            AP + +   D         +   +++   C           ++L +L   G+  + +EG
Sbjct: 171 AAPTLRLVAGDYQPGPKPKLQGLTSVLEVPCLGHNQQPVCPAQILAVLADFGLHKIFIEG 230

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           G     +F+ ++L+D + +  + ++IG G
Sbjct: 231 GGVTVSAFLRAQLLDRLHVMVAPMIIGSG 259


>gi|114562317|ref|YP_749830.1| CMP/dCMP deaminase, zinc-binding [Shewanella frigidimarina NCIMB
           400]
 gi|114333610|gb|ABI70992.1| tRNA-adenosine deaminase [Shewanella frigidimarina NCIMB 400]
          Length = 189

 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 17/126 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
           + D ++M  A++ +     L    P V  ++VKD ++I  G    +  +    HAE++ +
Sbjct: 30  AIDEKWMRLAMQLAE-QAELKGEVP-VGAVLVKDDVLIASGCNLSIVNHDPTAHAEMECI 87

Query: 61  EEAG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +AG   E  R    T YVTLEPC+       CA  ++   I RVV   DD     +G  
Sbjct: 88  RQAGKVLENYRMLDTTLYVTLEPCTM------CAGAMVHSRITRVVYGADDLKTGAAGSV 141

Query: 116 LQWLSQ 121
           +  L  
Sbjct: 142 INLLQH 147


>gi|315657779|ref|ZP_07910659.1| cytidine/deoxycytidylate deaminase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315491576|gb|EFU81187.1| cytidine/deoxycytidylate deaminase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 180

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 17/121 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-----AYGGCPHAEV 57
           +SS + R +  A R ++   G     P  A ++  +GIV G G+       Y    HAE+
Sbjct: 29  LSSAEVRALDTAYRLAQ-KAGRAGDIPVGAVVLTPEGIVAGLGLNQRENPPYDPSAHAEI 87

Query: 58  QALEEAG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL EA         +G T   TLEPC+       CA  I+   I R++    DP     
Sbjct: 88  VALREAAGRLERWNLKGCTLVATLEPCTM------CAGAIVNARISRLIFGAWDPKAGAC 141

Query: 113 G 113
           G
Sbjct: 142 G 142


>gi|169824845|ref|YP_001692456.1| putative deaminase [Finegoldia magna ATCC 29328]
 gi|167831650|dbj|BAG08566.1| putative deaminase [Finegoldia magna ATCC 29328]
          Length = 155

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 64/158 (40%), Gaps = 21/158 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D +FM  A+  +R  +        V C+IVK+G +I +      T      HAE++A+ +
Sbjct: 5   DEKFMIKAIEQAR--IAFDMDEVPVGCVIVKNGEIIAQAYNSVETDNNATMHAELKAINQ 62

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +          T YVTLEPC        C   ++   I +VV    D      G  L 
Sbjct: 63  ATQVIGNFRLDDCTMYVTLEPCVM------CTGALVYSRIPKVVFGAFDKKRGACGSLLS 116

Query: 118 WLSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSH 151
               +G    I V  +ME E    + ++  R  EK  +
Sbjct: 117 LNDYEGLNHKIEVKSIMEKECVELMQSFFRRIREKNKN 154


>gi|303243154|ref|ZP_07329591.1| CMP/dCMP deaminase zinc-binding [Acetivibrio cellulolyticus CD2]
 gi|302589304|gb|EFL59115.1| CMP/dCMP deaminase zinc-binding [Acetivibrio cellulolyticus CD2]
          Length = 154

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 17/113 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG--VTAYGGCP--HAEVQALEEAGE 65
           FM  AL+ ++       T   V  +IVKDG++I RG         P  HAE+ A+++A +
Sbjct: 7   FMKEALKEAKKAYKKDET--PVGAVIVKDGVIISRGHNEKEMKNDPTLHAEISAIKKACK 64

Query: 66  E-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           +           YVTLEPC+       CA  II+  + R+ +   DP     G
Sbjct: 65  KLNTWRLNDCDLYVTLEPCAM------CAGAIIQARVGRLFIGTPDPKAGAVG 111


>gi|71907824|ref|YP_285411.1| tRNA-adenosine deaminase [Dechloromonas aromatica RCB]
 gi|71847445|gb|AAZ46941.1| tRNA-adenosine deaminase [Dechloromonas aromatica RCB]
          Length = 146

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 20/132 (15%)

Query: 31  VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           V  ++V +G ++GRG  +  G      HAE+ AL +A          G   +VTLEPC+ 
Sbjct: 19  VGAVVVLNGEIVGRGFNSPIGESDPTAHAEIAALRDAARVLGNYRLPGCELFVTLEPCAM 78

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR-----GLQWLSQKGIIVDRMMESEGKI 136
                 CA  I+   I RV+    DP   V G      G++ L+    +   ++  E   
Sbjct: 79  ------CAGAIMHSRISRVIYGARDPKTGVHGSVVDLFGVERLNHHATVEGGVLAEECST 132

Query: 137 FLHAYLTRQVEK 148
            L  +   + +K
Sbjct: 133 LLSGFFASRRKK 144


>gi|124516363|gb|EAY57871.1| putative zinc-binding cytidine/deoxycytidylate deaminase
           [Leptospirillum rubarum]
          Length = 164

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 16/118 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
           + D R+M+ AL  ++  +      P  A L+  +G V+GRG    V +     HAE+ AL
Sbjct: 10  NMDERWMTEALSEAKTAMEKNEI-PIGAILVDANGTVLGRGHNQRVGSTDPTAHAEIVAL 68

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
             +G   +     G T YVT+EPC        C   ++E  +  VV  + +P   V+G
Sbjct: 69  RTSGLHVKNYRLPGTTLYVTVEPCLM------CFGALLEARVETVVFGIREPRWGVTG 120


>gi|306826204|ref|ZP_07459538.1| tRNA-specific adenosine deaminase [Streptococcus sp. oral taxon
          071 str. 73H25AP]
 gi|304431480|gb|EFM34462.1| tRNA-specific adenosine deaminase [Streptococcus sp. oral taxon
          071 str. 73H25AP]
          Length = 155

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64
          FM  ALR +   + L      + C+IVKD  +IGRG  A         HAE+ A+E A  
Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKDREIIGRGHNAREELQRAVMHAEIMAIENANV 68

Query: 65 -EEAR---GATAYVTLEPC 79
           EE+      T +VT+EPC
Sbjct: 69 SEESWRLLDCTLFVTIEPC 87


>gi|284046137|ref|YP_003396477.1| bifunctional deaminase-reductase domain protein [Conexibacter
           woesei DSM 14684]
 gi|283950358|gb|ADB53102.1| bifunctional deaminase-reductase domain protein [Conexibacter
           woesei DSM 14684]
          Length = 250

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 81/195 (41%), Gaps = 14/195 (7%)

Query: 144 RQVEKRSHITLKIAVSQDNMIGMAG-CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
           R   +R  + +  A + D  I + G  G++   G         LR Q+DA+LVG GT+ A
Sbjct: 27  RAPAERPFVAVNFAATVDGRIALGGRSGAIGDDG--DTEVFRRLRTQADALLVGTGTLAA 84

Query: 203 DD---PELTCRLNGLQE-----HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE--ND 252
           +    P     L   +E       P  +++    +L L+  + +    A  I+ TE   +
Sbjct: 85  EQYSRPIRRAELRAAREAIGLAPVPPLVVIARSGRLPLEIPLFQDPD-AHAIVYTEVATE 143

Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
            P +      + I+    +      L  +    GV SLL EGG  +    ++  LVD + 
Sbjct: 144 PPAVPARVELQRIDPAAGEPTLTAALRHLRREHGVRSLLCEGGPQLLSGLLHEGLVDELF 203

Query: 313 LYRSQIVIGEGGIPS 327
           L  +  + G GG P+
Sbjct: 204 LTVAPQLAGGGGEPT 218


>gi|238486578|ref|XP_002374527.1| cytosine deaminase, putative [Aspergillus flavus NRRL3357]
 gi|317144152|ref|XP_001819938.2| cytosine deaminase [Aspergillus oryzae RIB40]
 gi|220699406|gb|EED55745.1| cytosine deaminase, putative [Aspergillus flavus NRRL3357]
          Length = 148

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 18/127 (14%)

Query: 29  PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG----EEARGATAYVTLEPCS 80
           P  A L+ KDG ++GRG    V       HAE+ ALE +G        GAT Y TL PC 
Sbjct: 24  PIGAALVSKDGKILGRGHNMRVQKGSATLHAEMSALENSGRLPASAYEGATMYTTLSPCD 83

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
                  C    I   ++RVV+  +   +     G ++L  +G  +  +   E K  +  
Sbjct: 84  M------CTGACILYKVKRVVIGENKSFM----GGEEYLKNRGKELVVLNNEECKQLMEK 133

Query: 141 YLTRQVE 147
           ++  + E
Sbjct: 134 FMKEKPE 140


>gi|83767797|dbj|BAE57936.1| unnamed protein product [Aspergillus oryzae]
          Length = 142

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 18/127 (14%)

Query: 29  PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG----EEARGATAYVTLEPCS 80
           P  A L+ KDG ++GRG    V       HAE+ ALE +G        GAT Y TL PC 
Sbjct: 24  PIGAALVSKDGKILGRGHNMRVQKGSATLHAEMSALENSGRLPASAYEGATMYTTLSPCD 83

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
                  C    I   ++RVV+  +   +     G ++L  +G  +  +   E K  +  
Sbjct: 84  M------CTGACILYKVKRVVIGENKSFM----GGEEYLKNRGKELVVLNNEECKQLMEK 133

Query: 141 YLTRQVE 147
           ++  + E
Sbjct: 134 FMKEKPE 140


>gi|295702259|ref|YP_003595334.1| tRNA-specific adenosine deaminase [Bacillus megaterium DSM 319]
 gi|294799918|gb|ADF36984.1| tRNA-specific adenosine deaminase [Bacillus megaterium DSM 319]
          Length = 156

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 17/108 (15%)

Query: 54  HAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+ A++EA ++ R      AT YVTLEPC      P CA  I+   ++RVV    DP 
Sbjct: 53  HAELLAIDEACKKLRTWRLEDATLYVTLEPC------PMCAGAIVLSRVKRVVFGAYDPK 106

Query: 109 VRVSGRGLQWL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSH 151
              +G  L  L     + +  +V  M+E E    L  +  R++ +R  
Sbjct: 107 GGCAGTLLNLLKFEKFNHQAEVVGGMLEEECGSLLTTFF-RELRQRKK 153


>gi|134098685|ref|YP_001104346.1| cytosine deaminase [Saccharopolyspora erythraea NRRL 2338]
 gi|291003628|ref|ZP_06561601.1| cytosine deaminase [Saccharopolyspora erythraea NRRL 2338]
 gi|133911308|emb|CAM01421.1| cytosine deaminase [Saccharopolyspora erythraea NRRL 2338]
          Length = 156

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 16/104 (15%)

Query: 29  PSVACLIVKDGIVIGRGVT--AYGGCP--HAEVQALEEAGEEAR--GATAYVTLEPCSHY 82
           P  A L+ +DG V+GRG       G P  H E  A   AG +    G T   TL PC + 
Sbjct: 31  PIGAALVGRDGEVLGRGHNRRVQDGDPSVHGETSAFRAAGRQRSYAGTTMVTTLSPCWY- 89

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
                C+  + + GI RVV+     + R    G  WL++ G+ V
Sbjct: 90  -----CSGLVRQFGISRVVIG----EARNFHGGHDWLAEHGVEV 124


>gi|229053868|ref|ZP_04195305.1| hypothetical protein bcere0026_110 [Bacillus cereus AH603]
 gi|228721478|gb|EEL72995.1| hypothetical protein bcere0026_110 [Bacillus cereus AH603]
          Length = 164

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 72/170 (42%), Gaps = 23/170 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ A++E
Sbjct: 4   DIYFMQLAIEEAKKAEAIQEV--PIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDE 61

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++        AT YVTLEPC      P CA  I+   I+RVV    DP    +G  + 
Sbjct: 62  ACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRIKRVVYGASDPKGGCAGTLMN 115

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            L+ +       +V  ++E E    L  +  R++ K+     K+  S  N
Sbjct: 116 LLTDERFNHQCEVVAGVLEEECGTLLTIFF-RELRKKRKEVKKLEKSNGN 164


>gi|304437889|ref|ZP_07397836.1| competence protein ComEB [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369111|gb|EFM22789.1| competence protein ComEB [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 158

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 42/157 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53
           S+D  FM  AL FS +     S +P     AC++ +D  ++G G   Y G P        
Sbjct: 4   SWDEYFMGVAL-FSAYR----SKDPHTQVGACIVNEDKHIVGVG---YNGMPNGCDDHEY 55

Query: 54  -----------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                            HAE+ A+  A    +G   Y +L PC+       C + II+ G
Sbjct: 56  PWGRTGEFAEQKYPYVVHAELNAILNASTSLKGCRIYTSLFPCNE------CCKAIIQSG 109

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
           IR V+   D      S +  + +     +  R ME+E
Sbjct: 110 IREVIYLSDKYAAADSTKASKRMLASANVTCRRMETE 146


>gi|288554625|ref|YP_003426560.1| CMP/dCMP deaminase zinc-binding protein [Bacillus pseudofirmus OF4]
 gi|288545785|gb|ADC49668.1| CMP/dCMP deaminase zinc-binding protein [Bacillus pseudofirmus OF4]
          Length = 162

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 20/134 (14%)

Query: 31  VACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           +  +IVKDG VI     R    +    HAE+ A++EA +        G T YVTLEPC  
Sbjct: 27  IGAVIVKDGEVIAAAHNRRECDHQAIAHAELLAIKEACDVLGSWRLSGCTLYVTLEPC-- 84

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL-----SQKGIIVDRMMESEGKI 136
               P CA  I++  I  VV    DP    +G  +  L     + +  ++   +E+E   
Sbjct: 85  ----PMCAGAIVQSRIDLVVYGAADPKAGCAGTLMNLLDDPRFNHRAEVISGCLETECGE 140

Query: 137 FLHAYLTRQVEKRS 150
            L A+  +   KR 
Sbjct: 141 RLTAFFRKLRAKRK 154


>gi|139473043|ref|YP_001127758.1| deaminase [Streptococcus pyogenes str. Manfredo]
 gi|134271289|emb|CAM29505.1| putative deaminase [Streptococcus pyogenes str. Manfredo]
          Length = 157

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 12/89 (13%)

Query: 1  MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
          MP S      FM  AL+ +     L      + C+IVKDG +IGRG  A         HA
Sbjct: 1  MPYSLEEQTYFMQEALKEAE--KSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHA 58

Query: 56 EVQALEEAGEEARG-----ATAYVTLEPC 79
          E+ A+ EA            T +VT+EPC
Sbjct: 59 EIMAINEANAHEGNWRLLDTTLFVTIEPC 87


>gi|254429334|ref|ZP_05043041.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Alcanivorax sp. DG881]
 gi|196195503|gb|EDX90462.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Alcanivorax sp. DG881]
          Length = 150

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 17/116 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           V  L+V+D  ++G+G    + A     HAE+ A+  A +  R     G+T YVTLEPC+ 
Sbjct: 25  VGALVVRDNRLLGKGYNQPIIASDPSAHAEIVAMRSAAQAERNYRLSGSTLYVTLEPCTM 84

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
                 C   ++   I R+V    +P   V    LQ  S      +  M+ EG + 
Sbjct: 85  ------CFGAMVHARIGRLVYGASEPRAGVCESQLQLPSVD--FYNHRMDVEGGVL 132


>gi|312279157|gb|ADQ63814.1| Cytidine/deoxycytidylate deaminase family protein, putative
          [Streptococcus thermophilus ND03]
          Length = 172

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
          FMS AL+ +     L      + C+IVKD  ++GRG  A         HAEV A++EA  
Sbjct: 12 FMSEALKEA--QKSLDKAEIPIGCVIVKDKEIVGRGHNAREELNQAIMHAEVMAIQEANR 69

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 70 TVGNWRLLDCTLFVTIEPC 88


>gi|171777570|ref|ZP_02919258.1| hypothetical protein STRINF_00093 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
 gi|171283179|gb|EDT48603.1| hypothetical protein STRINF_00093 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
          Length = 168

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
          FM  AL+ ++    L      + C+IVK+G +IGRG  A         HAE+ A+++A E
Sbjct: 12 FMREALKEAQ--KSLAKEEIPIGCVIVKNGDIIGRGHNAREERQKAILHAEIMAIDDANE 69

Query: 66 EARG-----ATAYVTLEPC 79
                   +T +VT+EPC
Sbjct: 70 NEGSWRLLDSTLFVTIEPC 88


>gi|313680072|ref|YP_004057811.1| tRNA(ile)-lysidine synthetase [Oceanithermus profundus DSM 14977]
 gi|313152787|gb|ADR36638.1| tRNA(Ile)-lysidine synthetase [Oceanithermus profundus DSM 14977]
          Length = 522

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 15/86 (17%)

Query: 31  VACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  ++V++G  +G    A         HAE+ AL  A E A      GAT YVTLEPC  
Sbjct: 402 IGAVVVREGEELGASANAVEARVNATAHAELLALRAAQERAGEKVLPGATLYVTLEPC-- 459

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDP 107
               P C   +IE  + RVV   ++P
Sbjct: 460 ----PMCLGALIEARVGRVVWATENP 481


>gi|50312303|ref|XP_456184.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49645320|emb|CAG98892.1| KLLA0F24794p [Kluyveromyces lactis]
          Length = 597

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 12/127 (9%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEAGEEA 67
           +FM  A+  +R + G T T  +V  L+V    ++  G +    G  HAE  AL++   ++
Sbjct: 447 KFMELAIDEAR-NCGETQTAFNVGALLVNGTDILSTGYSRELPGNTHAEQCALDKYFTKS 505

Query: 68  RGATA------YVTLEPCS-HYGRSPPCAQFIIEC--GIRRVVVCVDDPDVRVSGR-GLQ 117
            GA        Y T+EPCS     + PC   II+    I+ V V V +PD+ V       
Sbjct: 506 EGAKLPDGTIIYTTMEPCSLRLSGNLPCVDRIIQTTGAIKTVFVGVMEPDIFVKNNTSYH 565

Query: 118 WLSQKGI 124
            L+Q GI
Sbjct: 566 KLAQYGI 572


>gi|71066051|ref|YP_264778.1| tRNA-adenosine deaminase [Psychrobacter arcticus 273-4]
 gi|71039036|gb|AAZ19344.1| tRNA-adenosine deaminase [Psychrobacter arcticus 273-4]
          Length = 195

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 18/125 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGC---PHAEVQALEE 62
           D ++M+ AL+ ++   G       V  ++V +  +IG+G     G C    HAE+ AL E
Sbjct: 38  DIKWMTEALKLAK--QGAEREEVPVGAVLVHNQQIIGQGFNEPIGRCDATAHAEIVALRE 95

Query: 63  AGEEARG------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           A    +        T YVTLEPC+       C   +I   + R+V   ++P   + G  +
Sbjct: 96  ACAHLKNYRLPLQTTLYVTLEPCTM------CIGALIHARVDRLVYSTNEPRAGMVGSQM 149

Query: 117 QWLSQ 121
              +Q
Sbjct: 150 NLAAQ 154


>gi|229027869|ref|ZP_04184026.1| Uncharacterized deaminase yaaJ [Bacillus cereus AH1271]
 gi|228733445|gb|EEL84270.1| Uncharacterized deaminase yaaJ [Bacillus cereus AH1271]
          Length = 166

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 23/170 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM  A+  ++    +      +  +IV +G VI        T      HAE+ A++E
Sbjct: 6   DIYFMQLAIEEAKKAEAIQEV--PIGAVIVLNGEVISVAHNLRETEQRSIAHAELLAIDE 63

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  + 
Sbjct: 64  ACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMN 117

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            L+ +       +V  ++E E    L  +  R++ K+     K+  S++N
Sbjct: 118 LLTDERFNHQCEVVAGVLEKECGTLLTNFF-RELRKKRKAIKKLEKSKEN 166


>gi|222099239|ref|YP_002533807.1| Deoxycytidylate deaminase [Thermotoga neapolitana DSM 4359]
 gi|221571629|gb|ACM22441.1| Deoxycytidylate deaminase [Thermotoga neapolitana DSM 4359]
          Length = 199

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 9/58 (15%)

Query: 54  HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE  AL +A   G    GAT YVT +PCS       CA+ ++  GI+RVV   D PD
Sbjct: 126 HAEQNALMQAAKFGIAVNGATIYVTHKPCS------ICARLLVNAGIKRVVYEKDYPD 177


>gi|254473540|ref|ZP_05086936.1| cytosine deaminase [Pseudovibrio sp. JE062]
 gi|211957252|gb|EEA92456.1| cytosine deaminase [Pseudovibrio sp. JE062]
          Length = 148

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 53/125 (42%), Gaps = 17/125 (13%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI----GRGVTAYGGCPHAEVQALE 61
            ++ FM  AL  +R           + C++VKDG V+     R +       HAEV A+ 
Sbjct: 1   MNSTFMDMALNEAR--AAEARGEVPIGCVVVKDGKVLSAAGNRTLELNDPTAHAEVLAIR 58

Query: 62  EAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           EAG++       G   YVTLEPC      P CA  I    IRR+     D        G+
Sbjct: 59  EAGKQLNSQRLEGCDLYVTLEPC------PMCAAAISFARIRRLYYGAGDAKGGGVDHGV 112

Query: 117 QWLSQ 121
           ++ S 
Sbjct: 113 RFYSS 117


>gi|296276694|ref|ZP_06859201.1| putative tRNA-specific adenosine deaminase [Staphylococcus aureus
           subsp. aureus MR1]
          Length = 156

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 54/135 (40%), Gaps = 21/135 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM+ A+  ++    L      +  +I KD  VI R      T      HAE  A+E 
Sbjct: 4   DIYFMTLAIEEAKKAAQLGEV--PIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIER 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +        G T YVTLEPC        CA  I+   I RVV   DDP    S   + 
Sbjct: 62  AAKVLGSWRLEGCTLYVTLEPCVM------CAGTIVMSRIPRVVYGADDPKGGCSSSLMN 115

Query: 118 WLSQKGI----IVDR 128
            L Q       IVD+
Sbjct: 116 LLQQSNFNHRAIVDK 130


>gi|193636783|ref|XP_001945167.1| PREDICTED: deoxycytidylate deaminase-like [Acyrthosiphon pisum]
          Length = 220

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 51/131 (38%), Gaps = 44/131 (33%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53
           S+D  FM+ A       V   S +P     AC++  D  ++G G   Y G P        
Sbjct: 48  SWDDFFMATAFL-----VAKRSKDPVTQVGACIVTPDKKIVGTG---YNGMPIGCNDDNF 99

Query: 54  ------------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                             HAE+ A L +   + R  T YV L PC+       CA+ II+
Sbjct: 100 PWGKNNPSKLENKYFYVCHAEMNAVLNKNSMDVRNCTIYVALFPCNE------CAKIIIQ 153

Query: 95  CGIRRVVVCVD 105
            GI+ VV   D
Sbjct: 154 SGIKEVVYLSD 164


>gi|283131444|dbj|BAI63444.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae
          subsp. equisimilis]
          Length = 183

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 12/89 (13%)

Query: 1  MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
          MP S      FM  AL+ +     L      + C+IVKDG +IGRG  A         HA
Sbjct: 9  MPYSLEEQTYFMQEALKEAE--KSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHA 66

Query: 56 EVQALEEAGEEARG-----ATAYVTLEPC 79
          E+ A+ EA            T +VT+EPC
Sbjct: 67 EMMAINEANAHEGNWRLLDTTMFVTIEPC 95


>gi|303258084|ref|ZP_07344092.1| cytidine/deoxycytidylate deaminase family protein [Burkholderiales
           bacterium 1_1_47]
 gi|330998703|ref|ZP_08322432.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Parasutterella excrementihominis YIT 11859]
 gi|302859103|gb|EFL82186.1| cytidine/deoxycytidylate deaminase family protein [Burkholderiales
           bacterium 1_1_47]
 gi|329576442|gb|EGG57954.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Parasutterella excrementihominis YIT 11859]
          Length = 281

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 15/87 (17%)

Query: 29  PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPC 79
           P  A ++ K+G +IGRG    V  +    HAE+ AL+ A +  +       T YVTLEPC
Sbjct: 148 PVGAVVVDKEGKIIGRGHNLVVAGHDPSGHAEIIALKNASQNLKNYRLDNCTIYVTLEPC 207

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDD 106
                 P C+  II   + R+V    D
Sbjct: 208 ------PMCSGAIIGARLARLVYGAKD 228


>gi|223984558|ref|ZP_03634689.1| hypothetical protein HOLDEFILI_01984 [Holdemania filiformis DSM
           12042]
 gi|223963486|gb|EEF67867.1| hypothetical protein HOLDEFILI_01984 [Holdemania filiformis DSM
           12042]
          Length = 160

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 6/55 (10%)

Query: 47  TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           T Y    HAE+ A+  +  +  G T YV+L PC+       CA+ II+ GIR++V
Sbjct: 70  TKYAFVVHAELNAILNSTRDLHGCTLYVSLFPCNE------CAKAIIQSGIRKIV 118


>gi|331701735|ref|YP_004398694.1| CMP/dCMP deaminase zinc-binding protein [Lactobacillus buchneri
           NRRL B-30929]
 gi|329129078|gb|AEB73631.1| CMP/dCMP deaminase zinc-binding protein [Lactobacillus buchneri
           NRRL B-30929]
          Length = 165

 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 47/110 (42%), Gaps = 17/110 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
           D+RFM AAL        L    P +  ++V DG ++GRG         G  HAE+ A++E
Sbjct: 5   DSRFMKAAL-IEANKAYLIGEVP-IGAVVVHDGTIVGRGHNLREHLNDGTAHAEILAIQE 62

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           A    R         YVT+EPC        CA  II   I  V     DP
Sbjct: 63  ACRTLRSWRLIDCDLYVTIEPC------LMCAGAIINSRIENVCFGSRDP 106


>gi|71909993|ref|YP_281543.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
          MGAS5005]
 gi|60416281|sp|P68999|TADA_STRP1 RecName: Full=tRNA-specific adenosine deaminase
 gi|71852775|gb|AAZ50798.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
          MGAS5005]
          Length = 171

 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 12/89 (13%)

Query: 1  MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
          MP S      FM  AL+ +     L      + C+IVKDG +IGRG  A         HA
Sbjct: 1  MPYSLEEQTYFMQEALKEAE--KSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHA 58

Query: 56 EVQALEEAGEEARG-----ATAYVTLEPC 79
          E+ A+ EA            T +VT+EPC
Sbjct: 59 EMMAINEANAHEGNWRLLDTTLFVTIEPC 87


>gi|310826939|ref|YP_003959296.1| hypothetical protein ELI_1347 [Eubacterium limosum KIST612]
 gi|308738673|gb|ADO36333.1| hypothetical protein ELI_1347 [Eubacterium limosum KIST612]
          Length = 159

 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 57/142 (40%), Gaps = 46/142 (32%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53
           S+D  FM  AL  ++      S +P     AC++  D  ++  G   Y G P        
Sbjct: 8   SWDEYFMGIALLAAK-----RSKDPGTQVGACIVSPDNKILTMG---YNGMPTGCHDDNM 59

Query: 54  -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                            HAE  A L   G   +GAT Y TL PC+       CA+ II+ 
Sbjct: 60  PWEREGDPLETKYLYVCHAEFNAILNNGGRSLKGATLYATLFPCNE------CAKAIIQS 113

Query: 96  GIRRVVVCVD---DPDVRVSGR 114
           GI++V+   D   D D  ++ +
Sbjct: 114 GIQKVIYMEDKYADTDAVIASK 135


>gi|146416895|ref|XP_001484417.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 150

 Score = 40.8 bits (94), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 18/125 (14%)

Query: 29  PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA----RGATAYVTLEPCS 80
           P    LI +DG V+GRG            H E+  LE AG       +  T Y TL PCS
Sbjct: 26  PIGGALISEDGTVLGRGHNLRFQKDSATLHGEISTLENAGRLKGSVYKNCTMYTTLSPCS 85

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
                  C+   I  G++RVVV  ++  +        W+ + GI V  +   E K  +  
Sbjct: 86  M------CSGACIMYGVKRVVVGENETFMGAE----DWIRKLGIEVVNLNNQECKDLMAK 135

Query: 141 YLTRQ 145
           ++  +
Sbjct: 136 FIKER 140


>gi|223983492|ref|ZP_03633678.1| hypothetical protein HOLDEFILI_00958 [Holdemania filiformis DSM
           12042]
 gi|223964664|gb|EEF68990.1| hypothetical protein HOLDEFILI_00958 [Holdemania filiformis DSM
           12042]
          Length = 181

 Score = 40.8 bits (94), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 17/113 (15%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59
           S  D  FM  A++ +R    L      +  ++V DG ++ RG            HAE+ A
Sbjct: 7   SKNDEYFMRQAIKEARKAEALDEV--PIGAVLVHDGKILARGHNLREKKQSSLAHAEIVA 64

Query: 60  LEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           +E+A  +           YVTLEPC      P CA  I++  I +VV    DP
Sbjct: 65  IEKACRKTGSWRLEDCVLYVTLEPC------PMCAGAILQSRIAKVVYGAADP 111


>gi|55823732|ref|YP_142173.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          thermophilus CNRZ1066]
 gi|55739717|gb|AAV63358.1| cytidine/deoxycytidylate deaminase family protein, putative
          [Streptococcus thermophilus CNRZ1066]
          Length = 172

 Score = 40.8 bits (94), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
          FMS AL+ +     L      + C+IVKD  ++GRG  A         HAEV A++EA  
Sbjct: 12 FMSEALKEA--QKSLDKAEIPIGCVIVKDREIVGRGHNAREELNQAIMHAEVMAIQEANR 69

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 70 TVGNWRLLDCTLFVTIEPC 88


>gi|322412766|gb|EFY03674.1| putative cytidine/deoxycytidylate deaminase family protein
          [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
          27957]
          Length = 175

 Score = 40.8 bits (94), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
          FM  AL+ +     L      + C+IVKDG +IGRG  A         HAE+ A+ EA  
Sbjct: 11 FMQEALKEA--EKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANA 68

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 69 HEGNWRLLDTTMFVTIEPC 87


>gi|256545480|ref|ZP_05472842.1| tRNA-specific adenosine deaminase [Anaerococcus vaginalis ATCC
           51170]
 gi|256398876|gb|EEU12491.1| tRNA-specific adenosine deaminase [Anaerococcus vaginalis ATCC
           51170]
          Length = 157

 Score = 40.8 bits (94), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 15/85 (17%)

Query: 31  VACLIVKDGIVIGRGVT-AYGG---CPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           + C+IVKD  +I R     Y G     HAE+ A+++A +          T YVT+EPCS 
Sbjct: 25  IGCVIVKDEKIIARSHNYTYKGKSALKHAEILAIDKASKYVGDFRLEDCTMYVTMEPCS- 83

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDD 106
                 CA  II   I+R+V+ + D
Sbjct: 84  -----MCAGAIINSRIKRLVIGLAD 103


>gi|289208495|ref|YP_003460561.1| CMP/dCMP deaminase zinc-binding protein [Thioalkalivibrio sp.
           K90mix]
 gi|288944126|gb|ADC71825.1| CMP/dCMP deaminase zinc-binding protein [Thioalkalivibrio sp.
           K90mix]
          Length = 175

 Score = 40.8 bits (94), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 15/94 (15%)

Query: 33  CLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPP 87
           CL V     IG     +    HAE++ L  AG+        G T YVTLEPCS       
Sbjct: 60  CLAVAHNAPIGE----HDATAHAEIRVLRRAGKRCSNYRLTGTTLYVTLEPCSM------ 109

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           CA  +I   + R+V    DP    +G  +  L  
Sbjct: 110 CAGAMIHARVERLVFAASDPRTGAAGGAIDLLHH 143


>gi|331028070|ref|YP_004421784.1| deoxycytidylate deaminase [Roseobacter phage RDJL Phi 1]
 gi|301341533|gb|ADK73417.1| deoxycytidylate deaminase [Roseobacter phage RDJL Phi 1]
          Length = 154

 Score = 40.8 bits (94), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 6/49 (12%)

Query: 54  HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           HAE+ A+  A     G T Y T  PCSH      CA  II+ GI+RVV 
Sbjct: 73  HAELNAILNASRSVVGWTLYATTHPCSH------CAGAIIQAGIKRVVA 115


>gi|312196151|ref|YP_004016212.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c]
 gi|311227487|gb|ADP80342.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c]
          Length = 250

 Score = 40.8 bits (94), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 85/185 (45%), Gaps = 19/185 (10%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD----- 204
           +H+      + D    + G  S  + G   +   H LR  +D +LVG GT  A++     
Sbjct: 32  AHVRANFVSAADGAAEVGGR-SAALGGPGDRQIFHTLRWLADVVLVGAGTARAENYGPAI 90

Query: 205 ---PELTCRLN-GLQEHSPMRIILDPHFKLSLD--SKIIKTALLAPVIIVTENDDPVLAL 258
              P    R+  GL    P+ ++      L++D  +++   A+    +++T    PV  +
Sbjct: 91  VPPPRQEARIAAGLAPVPPIAVV---SGSLAIDPGARLFGAAVRP--LLLTAASAPVERV 145

Query: 259 AFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
           +  ++  +++ C  +  +L+ +L  L GRG++ +L EGG  +      + L+D + L  +
Sbjct: 146 SALREVADVVVCGDEQVELELVLGALAGRGLSRVLTEGGPMLHAQLAGAGLLDELCLTVA 205

Query: 317 QIVIG 321
            ++ G
Sbjct: 206 PLLAG 210


>gi|330999408|ref|ZP_08323122.1| ComE operon protein 2 family protein [Parasutterella
           excrementihominis YIT 11859]
 gi|329574834|gb|EGG56393.1| ComE operon protein 2 family protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 138

 Score = 40.8 bits (94), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 32/122 (26%)

Query: 30  SVACLIVKDGIVIGRGV----TAYGGC---------------PHAEVQA---LEEAGEEA 67
            V C+IVK+  +I  G     T Y  C                HAE+ A   L + G  +
Sbjct: 27  KVGCIIVKNHSIISFGWNGMPTGYDNCCEYEVDGKLVTRPEVQHAELNAIAKLAQNGYSS 86

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            GA  ++T  PC H      C+  I +CGI  V    +  D      G+Q+L + GI V+
Sbjct: 87  NGAKIFITHSPCIH------CSLLIQKCGINEVYYHENYRD----DAGIQFLKKAGIKVE 136

Query: 128 RM 129
           ++
Sbjct: 137 QL 138


>gi|282918346|ref|ZP_06326083.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus C427]
 gi|282317480|gb|EFB47852.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus C427]
          Length = 156

 Score = 40.8 bits (94), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 54/135 (40%), Gaps = 21/135 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM+ A+  ++    L      +  +I KD  VI R      T      HAE  A+E 
Sbjct: 4   DIYFMTLAIEEAKKAAQLGEV--PIGAIITKDDEVIARANNLRETLQQPTAHAEHIAIER 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +          T YVTLEPC        CA  I+   I RVV   DDP    SG  + 
Sbjct: 62  AAKVLGSWRLEDCTLYVTLEPCVM------CAGTIVMSRIPRVVYGADDPKGGCSGSLMN 115

Query: 118 WLSQKGI----IVDR 128
            L Q       IVD+
Sbjct: 116 LLQQSNFNHRAIVDK 130


>gi|50913560|ref|YP_059532.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
          MGAS10394]
 gi|71902843|ref|YP_279646.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
          MGAS6180]
 gi|94987813|ref|YP_595914.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
          MGAS9429]
 gi|94989691|ref|YP_597791.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
          MGAS10270]
 gi|94991689|ref|YP_599788.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
          MGAS2096]
 gi|94993570|ref|YP_601668.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
          MGAS10750]
 gi|306828137|ref|ZP_07461400.1| cytidine/deoxycytidylate deaminase [Streptococcus pyogenes ATCC
          10782]
 gi|50902634|gb|AAT86349.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
          MGAS10394]
 gi|71801938|gb|AAX71291.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
          MGAS6180]
 gi|94541321|gb|ABF31370.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
          MGAS9429]
 gi|94543199|gb|ABF33247.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
          MGAS10270]
 gi|94545197|gb|ABF35244.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
          MGAS2096]
 gi|94547078|gb|ABF37124.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
          MGAS10750]
 gi|304429674|gb|EFM32720.1| cytidine/deoxycytidylate deaminase [Streptococcus pyogenes ATCC
          10782]
          Length = 179

 Score = 40.8 bits (94), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 12/89 (13%)

Query: 1  MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
          MP S      FM  AL+ +     L      + C+IVKDG +IGRG  A         HA
Sbjct: 9  MPYSLEEQTYFMQEALKEAE--KSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHA 66

Query: 56 EVQALEEAGEEARG-----ATAYVTLEPC 79
          E+ A+ EA            T +VT+EPC
Sbjct: 67 EMMAINEANAHEGNWRLLDTTLFVTIEPC 95


>gi|309390267|gb|ADO78147.1| tRNA-adenosine deaminase [Halanaerobium praevalens DSM 2228]
          Length = 154

 Score = 40.8 bits (94), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 17/110 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
           D ++M  AL  +R           +  ++V +  V+GRG            HAE+ AL E
Sbjct: 4   DIKYMKMALAEAR--KAYQRAEVPIGAVVVCNDQVVGRGFNLREQTQDPTTHAEIIALRE 61

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           A              YVTLEPC      P CA  I++  I+R+V    DP
Sbjct: 62  AASNKVSWRLEDCQLYVTLEPC------PMCAGAILQSRIKRLVYGASDP 105


>gi|166031359|ref|ZP_02234188.1| hypothetical protein DORFOR_01047 [Dorea formicigenerans ATCC
           27755]
 gi|166028764|gb|EDR47521.1| hypothetical protein DORFOR_01047 [Dorea formicigenerans ATCC
           27755]
          Length = 157

 Score = 40.8 bits (94), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 17/123 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
           D ++M  A++ ++    +      + C+IV    +I RG            HAE+QA+ +
Sbjct: 4   DEKYMREAIKQAKKAYAIGEV--PIGCVIVYQDKIIARGYNRRTIDKNTLAHAELQAIRK 61

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++         T YVTLEPC        C+  I++  + RVVV   +P    +G  L 
Sbjct: 62  ASKKMEDWRLEECTMYVTLEPCQM------CSGAIVQSRMTRVVVGCMNPKAGCAGSILN 115

Query: 118 WLS 120
            L 
Sbjct: 116 LLQ 118


>gi|229165011|ref|ZP_04292809.1| hypothetical protein bcere0007_110 [Bacillus cereus AH621]
 gi|228618463|gb|EEK75490.1| hypothetical protein bcere0007_110 [Bacillus cereus AH621]
          Length = 164

 Score = 40.8 bits (94), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 23/170 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ A++E
Sbjct: 4   DIYFMQLAIEEAKKAEAIQEV--PIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDE 61

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++        AT YVTLEPC      P CA  I+   I+RV+    DP    +G  + 
Sbjct: 62  ACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRIKRVIYGASDPKGGCAGTLMN 115

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            L+ +       +V  ++E E    L  +  R++ K+     K+  S  N
Sbjct: 116 LLTDERFNHQCEVVPGVLEEECGTLLTIFF-RELRKKRKEVKKLEKSNGN 164


>gi|311993209|ref|YP_004010075.1| dCMP deaminase [Enterobacteria phage CC31]
 gi|284178047|gb|ADB81713.1| dCMP deaminase [Enterobacteria phage CC31]
          Length = 188

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 9/53 (16%)

Query: 54  HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           HAE+ A+      G    GAT YVTL PC      P CA+ I + GI+++V C
Sbjct: 96  HAELNAILFAARNGSSIEGATMYVTLSPC------PDCAKAIAQSGIKKLVYC 142


>gi|253795669|ref|YP_003038765.1| putative riboflavin biosynthesis protein RibD [Candidatus
          Hodgkinia cicadicola Dsem]
 gi|253739977|gb|ACT34312.1| putative riboflavin biosynthesis protein RibD [Candidatus
          Hodgkinia cicadicola Dsem]
          Length = 305

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
          V   + N  V CL      ++    TA GG PHAE      A  +    + +V+L PCS 
Sbjct: 15 VATAAVNQRVVCLWRVARWLLASS-TASGGRPHAETLCSSTACRD-DATSVFVSLAPCSG 72

Query: 82 YGRSPPC 88
          +G++PPC
Sbjct: 73 FGKTPPC 79


>gi|251783385|ref|YP_002997690.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae
          subsp. equisimilis GGS_124]
 gi|242392017|dbj|BAH82476.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae
          subsp. equisimilis GGS_124]
          Length = 175

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
          FM  AL+ +     L      + C+IVKDG +IGRG  A         HAE+ A+ EA  
Sbjct: 11 FMQEALKEA--EKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANA 68

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 69 HEGNWRLLDTTMFVTIEPC 87


>gi|220932912|ref|YP_002509820.1| tRNA-adenosine deaminase [Halothermothrix orenii H 168]
 gi|219994222|gb|ACL70825.1| tRNA-adenosine deaminase [Halothermothrix orenii H 168]
          Length = 159

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 17/116 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM  AL  +R  + L      +  ++V +G ++G G     T      HAE+ A+ +
Sbjct: 4   DEDFMELALEEARKALALEEV--PIGAVVVCNGEIVGSGHNLKETENDPTAHAEIVAIRD 61

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A  +           YVT+EPC      P CA  I++  ++RVV    DP   V+G
Sbjct: 62  AARKLSSWRLNECQLYVTIEPC------PMCAGAIMQARLQRVVYGAVDPKAGVAG 111


>gi|157363614|ref|YP_001470381.1| CMP/dCMP deaminase zinc-binding [Thermotoga lettingae TMO]
 gi|157314218|gb|ABV33317.1| CMP/dCMP deaminase zinc-binding [Thermotoga lettingae TMO]
          Length = 186

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 9/58 (15%)

Query: 54  HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE  AL +A   G    GAT YVT +PCS       CA+ ++  GI RVV   + PD
Sbjct: 106 HAEQNALMQAAKFGISTNGATMYVTTKPCS------VCARLLVNAGITRVVYVQEYPD 157


>gi|29469223|gb|AAO65336.1| putative bifunctional enzyme deaminase/reductase [Streptomyces
           murayamaensis]
          Length = 226

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 78/190 (41%), Gaps = 17/190 (8%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R ++ L  AVS D  +       + ++     ++V   RA +DAILVG  T+  D+P L 
Sbjct: 4   RPYVVLSAAVSLDGRLDDTSRDRLVLSNRRDLDRVDDERAAADAILVGATTLRRDNPRLL 63

Query: 209 CRLN---------GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
                        G+ EH P+++ +    +++             V  V    D  L  A
Sbjct: 64  VASADRRARRVALGMPEH-PLKVTVTGSAEVNTSYAFWHCGGEKLVFTV----DGALLRA 118

Query: 260 FRKKN--INIIYC-DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
            R      +++      D   LL  L  RGV  LLVEGG  V    +   L D + L  +
Sbjct: 119 RRTVGDLADVVSTGPALDWHLLLDELGRRGVERLLVEGGGTVHTQLLAQDLADELHLVVA 178

Query: 317 QIVIGEGGIP 326
            +++GE G P
Sbjct: 179 PLLVGEAGAP 188


>gi|21909689|ref|NP_663957.1| putative cytidine/deoxycytidylate deaminase family protein
          [Streptococcus pyogenes MGAS315]
 gi|56807966|ref|ZP_00365780.1| COG0590: Cytosine/adenosine deaminases [Streptococcus pyogenes
          M49 591]
 gi|73921034|sp|Q8K8Q9|TADA_STRP3 RecName: Full=tRNA-specific adenosine deaminase
 gi|73921083|sp|Q5XE14|TADA_STRP6 RecName: Full=tRNA-specific adenosine deaminase
 gi|21903872|gb|AAM78760.1| putative cytidine/deoxycytidylate deaminase family protein
          [Streptococcus pyogenes MGAS315]
          Length = 171

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 12/89 (13%)

Query: 1  MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
          MP S      FM  AL+ +     L      + C+IVKDG +IGRG  A         HA
Sbjct: 1  MPYSLEEQTYFMQEALKEAE--KSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHA 58

Query: 56 EVQALEEAGEEARG-----ATAYVTLEPC 79
          E+ A+ EA            T +VT+EPC
Sbjct: 59 EMMAINEANAHEGNWRLLDTTLFVTIEPC 87


>gi|331005351|ref|ZP_08328736.1| tRNA-specific adenosine-34 deaminase [gamma proteobacterium
           IMCC1989]
 gi|330420848|gb|EGG95129.1| tRNA-specific adenosine-34 deaminase [gamma proteobacterium
           IMCC1989]
          Length = 158

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 21/136 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           V  ++VKD  +IG G    ++      HAE+QAL  A           AT YVTLEPC  
Sbjct: 28  VGAVVVKDNEIIGSGFNQPISLCDPTAHAEIQALRNAANHIGNYRLNSATLYVTLEPCGM 87

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGKI 136
                 CA  I+   I R+V    +P   V     Q     +L+ K +    +   E   
Sbjct: 88  ------CAGAIVHSRIARLVYGATEPKAGVIVSQTQQLDKAYLNHKVLYQGGVCAEECSE 141

Query: 137 FLHAYLT-RQVEKRSH 151
            +  + + R+ EK++H
Sbjct: 142 IISVFFSRRRAEKKAH 157


>gi|320586926|gb|EFW99589.1| cytosine deaminase [Grosmannia clavigera kw1407]
          Length = 170

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 18/124 (14%)

Query: 32  ACLIVKDGIVIGRGVTA--YGGCP--HAEVQALEEAGEEA----RGATAYVTLEPCSHYG 83
           A L+  DG ++G+G       G P  H E   L   G  +    +G+T Y TL PC    
Sbjct: 35  AALVSADGTLMGKGRNQRVQLGSPIHHGETSTLYNTGRLSASAYKGSTMYTTLSPCDM-- 92

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT 143
               C    I  GI+RVV+  +    R    G  +L Q+GI V  +  SE +  + A++ 
Sbjct: 93  ----CTGACILYGIKRVVIGEN----RTFLGGEAYLKQRGIDVVVLDNSECRELMEAFIA 144

Query: 144 RQVE 147
           +  E
Sbjct: 145 KSPE 148


>gi|218895158|ref|YP_002443569.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus G9842]
 gi|218541226|gb|ACK93620.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus G9842]
          Length = 166

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 23/170 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ A++E
Sbjct: 6   DIYFMQLAIEEAKKAEEMQEV--PIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDE 63

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  + 
Sbjct: 64  ACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMN 117

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            L+ +       +V  ++E E    L  +  R++ K+     K+  S  N
Sbjct: 118 LLTDERFNHQCEVVTGVLEEECGTLLTNFF-RELRKKRKAIKKLEKSNGN 166


>gi|319775162|ref|YP_004137650.1| tRNA-specific adenosine deaminase [Haemophilus influenzae F3047]
 gi|329122920|ref|ZP_08251491.1| tRNA-specific adenosine deaminase [Haemophilus aegyptius ATCC
           11116]
 gi|317449753|emb|CBY85960.1| tRNA-specific adenosine deaminase [Haemophilus influenzae F3047]
 gi|327471851|gb|EGF17291.1| tRNA-specific adenosine deaminase [Haemophilus aegyptius ATCC
           11116]
          Length = 173

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 47/112 (41%), Gaps = 16/112 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59
           S FD + M  AL  +     L    P  A L+   G +IG G    +       HAE+ A
Sbjct: 8   SEFDEKMMRYALELADKAEALGEI-PVGAVLVDDAGNIIGEGWNLSIVQSDPTAHAEIIA 66

Query: 60  LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           L    +  +      +T YVTLEPC+       CA  I+   IRR+V    D
Sbjct: 67  LRNGAKNIQNYRLLNSTLYVTLEPCTM------CAGAILHSRIRRLVFGASD 112


>gi|242796726|ref|XP_002482861.1| riboflavin biosynthesis protein Rib7, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218719449|gb|EED18869.1| riboflavin biosynthesis protein Rib7, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 341

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 35/185 (18%)

Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALL----APVIIVTENDDP-- 254
           DD E+  R    + H P  II+DP  +      SKII+        AP +I+ ++  P  
Sbjct: 146 DDEEMIIRKRQEKLHQPRPIIIDPKARWVPQETSKIIELVRQGRGKAPFVIIAKSTSPPQ 205

Query: 255 ------------VLALAFRKKNINIIYCDCR---DLKKLLTILVGR-GVTSLLVEGGAAV 298
                        +AL     +IN    +     D   +L +L  +  + S+++EGG ++
Sbjct: 206 HGRDLLEKYGGKFIALDTVASDINDENGETHRHFDWHDILHVLATKENIRSIMIEGGGSI 265

Query: 299 AHSFIN----SRLVDSIILYRSQIVIGEGG-IPSPL----EEGYL--EKNFMCVRRDYFG 347
            +S ++    S L+DS+I+  +   +G+GG + SP     E GY         V+   FG
Sbjct: 266 INSLLSEQKFSGLIDSVIVTIAPTWLGQGGVVVSPKRRVDEHGYAIPASRLTDVKWYPFG 325

Query: 348 SDVCL 352
            DV L
Sbjct: 326 EDVVL 330


>gi|227873068|ref|ZP_03991362.1| dCMP deaminase [Oribacterium sinus F0268]
 gi|227841049|gb|EEJ51385.1| dCMP deaminase [Oribacterium sinus F0268]
          Length = 173

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 11/68 (16%)

Query: 54  HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV----VCVDDPD 108
           HAE+ A L   G    GAT YVTL PC+       CA+ II+ GI+ +V    +  D P 
Sbjct: 91  HAELNAILNYRGGSLEGATIYVTLFPCNE------CAKAIIQSGIKTLVYWEDIYADTPA 144

Query: 109 VRVSGRGL 116
           V+ S R L
Sbjct: 145 VKASKRML 152


>gi|312173235|emb|CBX81490.1| tRNA-specific adenosine deaminase [Erwinia amylovora ATCC BAA-2158]
          Length = 166

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 54/129 (41%), Gaps = 21/129 (16%)

Query: 7   DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
           D  +M  ALR +R  W  G       V  ++V D  VIG G    +  +    HAE+ AL
Sbjct: 6   DEYWMRHALRLARRAWDEGEVP----VGAVLVLDNQVIGEGWNRPIGHHDPTAHAEMMAL 61

Query: 61  EEAG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            + G   E  R    T YVTLEPC        CA  +I   I R+V    D     +G  
Sbjct: 62  RQGGKMIENYRLLDTTLYVTLEPCVM------CAGAMIHSRIGRLVYGARDAKTGAAGSL 115

Query: 116 LQWLSQKGI 124
           L  L   G+
Sbjct: 116 LDVLGHPGM 124


>gi|322434989|ref|YP_004217201.1| CMP/dCMP deaminase zinc-binding protein [Acidobacterium sp.
           MP5ACTX9]
 gi|321162716|gb|ADW68421.1| CMP/dCMP deaminase zinc-binding protein [Acidobacterium sp.
           MP5ACTX9]
          Length = 292

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 21/143 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           V  ++V +  +I RG    +       HAE+ AL EAG             Y TLEPC+ 
Sbjct: 26  VGAVLVLNNEIIARGRNRVILDSDPTAHAEIVALREAGRILGNYRLENCDLYTTLEPCAM 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK------GIIVDRMMESEGK 135
                 CA  I+   IRR++    DP     G  L  ++         + V  + E  G+
Sbjct: 86  ------CAGAILHARIRRLIYAAADPKAGACGSALDVMNHPRLNHRMEVAVGLLAEECGE 139

Query: 136 IFLHAYLTRQVEKRSHITLKIAV 158
           +    + TR+++ + +    I +
Sbjct: 140 MLTSFFRTRRLKNKENAASAIGI 162


>gi|111018655|ref|YP_701627.1| hypothetical protein RHA1_ro01656 [Rhodococcus jostii RHA1]
 gi|110818185|gb|ABG93469.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodococcus
           jostii RHA1]
          Length = 245

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 78/193 (40%), Gaps = 25/193 (12%)

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLAD--------DPELTCRLN--GLQEHSPMRI 222
           P++  +    +  +RA +D +LVG GTV A+        + +   RL   GL    P+ +
Sbjct: 47  PLSDPVDHQLLRAMRAYADVVLVGAGTVRAETYGPVQLTEEQARYRLERWGLDAPPPIAV 106

Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF-RKKNINIIYCDCRDLKKLLTI 281
           +      +  DS +    +  P+++ T         A     +I +   D  ++  L+  
Sbjct: 107 VTR-TGNVPPDSPLFAGGV-RPIVVTTRRVAETRGAALGESADIVVAGDDSVEMPALMAA 164

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS------------PL 329
           L  RG   +L EGG  + H  +   LVD + L  +  + G   +P+             L
Sbjct: 165 LRDRGFGRILCEGGPTLLHDLVTHDLVDEMCLTLAPRLAGPQTLPASSGPTVQAPRTLSL 224

Query: 330 EEGYLEKNFMCVR 342
           E   +  +F+ +R
Sbjct: 225 EHALINDDFLYLR 237


>gi|55821816|ref|YP_140258.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
          thermophilus LMG 18311]
 gi|55737801|gb|AAV61443.1| cytidine/deoxycytidylate deaminase family protein, putative
          [Streptococcus thermophilus LMG 18311]
          Length = 172

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
          FMS AL+ +     L      + C+IVKD  ++GRG  A         HAEV A++EA  
Sbjct: 12 FMSEALKEA--QKSLDKAEIPIGCVIVKDREIVGRGHNAREELNQAIMHAEVMAIQEANR 69

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 70 TVGNWRLLDCTLFVTIEPC 88


>gi|330466554|ref|YP_004404297.1| hypothetical protein VAB18032_12915 [Verrucosispora maris
           AB-18-032]
 gi|328809525|gb|AEB43697.1| hypothetical protein VAB18032_12915 [Verrucosispora maris
           AB-18-032]
          Length = 248

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 81/199 (40%), Gaps = 24/199 (12%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV---------L 201
            + +    S D  + + G  S  ++G   K    LLR   DA+LV  GT+         L
Sbjct: 35  QLRMNFVTSVDGAVSLDGY-SAGLSGEPDKRVFRLLRMVCDALLVAAGTLRHEGYRALRL 93

Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL-APVIIVTENDDPVLALAF 260
            +      R +GL E+  + ++ +     SLD    + A   APV  +    D   A   
Sbjct: 94  DEQRRAWRRRHGLAEYPTLVVVSN-----SLDLDPTQAAFADAPVRPMVLTRDGAPAAPG 148

Query: 261 RKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
                ++++C  D  DL   L  L  RG   +L EGG  +  +   + LVD + L  + +
Sbjct: 149 LAAVADLVHCGTDEVDLAVGLAELRRRGFDQVLCEGGPHLFGALTAADLVDEVCLSVAPL 208

Query: 319 VIGEG------GIPSPLEE 331
           + G G      G PSP  +
Sbjct: 209 LAGAGAGRITAGTPSPARQ 227


>gi|218245509|ref|YP_002370880.1| bifunctional deaminase-reductase domain-containing protein
           [Cyanothece sp. PCC 8801]
 gi|218165987|gb|ACK64724.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC
           8801]
          Length = 176

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           D+KKL++ L  +G  +L ++GG  V  SF+   L+D II+ R  I++G+G
Sbjct: 94  DIKKLISQLNQKGYKNLYIDGGQ-VIQSFLQEDLIDEIIITRVPIILGKG 142


>gi|281357825|ref|ZP_06244311.1| dCMP deaminase [Victivallis vadensis ATCC BAA-548]
 gi|281315772|gb|EFA99799.1| dCMP deaminase [Victivallis vadensis ATCC BAA-548]
          Length = 159

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 65/167 (38%), Gaps = 49/167 (29%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPS---VACLIVKDGIVIGRGVTAY--------- 49
           P  S+D  FM  A      HV  T +N S   VA ++V+D  +I  G             
Sbjct: 7   PRPSWDQYFMDIA------HVAATRSNCSRRQVAAVLVRDCRIISTGYNGTPRGVRNCSD 60

Query: 50  GGCP------------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPC 88
           GGCP                  HAE  A+ +A   G   +GAT Y T  PC        C
Sbjct: 61  GGCPRCNSDAPSGTNLHQCVCSHAEENAIVQAAYHGIAVKGATLYTTFSPCL------LC 114

Query: 89  AQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135
           A+ II  GI  VV         +    +  L + G+IV R +E E K
Sbjct: 115 AKMIINAGIVEVVY---HQHYSIDDVSMGLLHEAGVIV-RPLEKEMK 157


>gi|90021123|ref|YP_526950.1| tRNA-adenosine deaminase [Saccharophagus degradans 2-40]
 gi|89950723|gb|ABD80738.1| tRNA-adenosine deaminase [Saccharophagus degradans 2-40]
          Length = 176

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 17/116 (14%)

Query: 31  VACLIVKDGIVIGRGV-TAYGGC---PHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V+D  ++G G  T   GC    HAE+ AL +A +         AT YVT+EPC+ 
Sbjct: 30  VGAVVVRDNKILGSGFNTPISGCDPTAHAEITALRQAAKNEHNYRLPDATLYVTIEPCTM 89

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
                 C   I+   + RVV    +P   V      W  Q+G   +  +E  G + 
Sbjct: 90  ------CLGAIMHARVARVVYGATEPKAGVIYSNPVW--QQGGFFNHQVEWCGGVL 137


>gi|293394841|ref|ZP_06639131.1| tRNA-specific adenosine deaminase [Serratia odorifera DSM 4582]
 gi|291422592|gb|EFE95831.1| tRNA-specific adenosine deaminase [Serratia odorifera DSM 4582]
          Length = 179

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  L+V D  VIG G    +  +    HAE+ AL + G   +  R   AT YVTLEPC  
Sbjct: 39  VGALLVLDNQVIGEGWNRPIGRHDPTAHAEIMALRQGGAVLQNYRLLNATLYVTLEPCVM 98

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  ++   IRR+V    D     +G  +  L   G+
Sbjct: 99  ------CAGAMVHSRIRRLVYGASDEKTGAAGSLVDILRHPGM 135


>gi|49482788|ref|YP_040012.1| deaminase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257424672|ref|ZP_05601099.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427340|ref|ZP_05603739.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257429977|ref|ZP_05606361.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432678|ref|ZP_05609038.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435582|ref|ZP_05611630.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus M876]
 gi|282903146|ref|ZP_06311037.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
           aureus subsp. aureus C160]
 gi|282904936|ref|ZP_06312794.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282907886|ref|ZP_06315721.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910199|ref|ZP_06318003.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282913391|ref|ZP_06321180.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
           aureus subsp. aureus M899]
 gi|282923308|ref|ZP_06330988.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus C101]
 gi|283957356|ref|ZP_06374809.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|293500437|ref|ZP_06666288.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293509382|ref|ZP_06668093.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus M809]
 gi|293523969|ref|ZP_06670656.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
           aureus subsp. aureus M1015]
 gi|295427097|ref|ZP_06819733.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297590551|ref|ZP_06949190.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
           aureus MN8]
 gi|49240917|emb|CAG39584.1| putative deaminase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257272242|gb|EEV04365.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275533|gb|EEV07006.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257279174|gb|EEV09775.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257282093|gb|EEV12228.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284773|gb|EEV14892.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus M876]
 gi|282314176|gb|EFB44566.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus C101]
 gi|282322423|gb|EFB52745.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
           aureus subsp. aureus M899]
 gi|282325591|gb|EFB55899.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282328270|gb|EFB58548.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331761|gb|EFB61272.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282596101|gb|EFC01062.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
           aureus subsp. aureus C160]
 gi|283790807|gb|EFC29622.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|290920932|gb|EFD97993.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291095442|gb|EFE25703.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467479|gb|EFF09994.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus M809]
 gi|295128885|gb|EFG58515.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297576850|gb|EFH95565.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
           aureus MN8]
 gi|312439022|gb|ADQ78093.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|315193922|gb|EFU24316.1| putative deaminase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 156

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 54/135 (40%), Gaps = 21/135 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM+ A+  ++    L      +  +I KD  VI R      T      HAE  A+E 
Sbjct: 4   DIYFMTLAIEEAKKAAQLGEV--PIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIER 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +          T YVTLEPC        CA  I+   I RVV   DDP    SG  + 
Sbjct: 62  AAKVLGSWRLEDCTLYVTLEPCVM------CAGTIVMSRIPRVVYGADDPKGGCSGSLMN 115

Query: 118 WLSQKGI----IVDR 128
            L Q       IVD+
Sbjct: 116 LLQQSNFNHRAIVDK 130


>gi|262276493|ref|ZP_06054302.1| tRNA-specific adenosine-34 deaminase [Grimontia hollisae CIP
           101886]
 gi|262220301|gb|EEY71617.1| tRNA-specific adenosine-34 deaminase [Grimontia hollisae CIP
           101886]
          Length = 174

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 17/128 (13%)

Query: 43  GRGVTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGI 97
            R +  +    HAE+ AL +AG++ +      A  YVTLEPC      P CA  ++   I
Sbjct: 45  NRLIGQHDATAHAEMMALRQAGKKLQNYRLLEAVLYVTLEPC------PMCASAMVHSRI 98

Query: 98  RRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL-TRQVEKRSH 151
            +VV    D     +G  +  LS  G+         ++E E +  L A+   R+ EK++ 
Sbjct: 99  GKVVFGAPDYKTGAAGSVMNLLSYDGVNHHVQFQGGVLEEECREQLQAFFRRRRQEKKAE 158

Query: 152 ITLKIAVS 159
              + AV 
Sbjct: 159 KEARKAVQ 166


>gi|322515941|ref|ZP_08068882.1| tRNA-specific adenosine deaminase [Streptococcus vestibularis
          ATCC 49124]
 gi|322125615|gb|EFX96945.1| tRNA-specific adenosine deaminase [Streptococcus vestibularis
          ATCC 49124]
          Length = 172

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
          FMS AL+ +     L      + C+IVKD  ++GRG  A         HAEV A++EA  
Sbjct: 12 FMSEALKEA--QKSLDKAEIPIGCVIVKDREIVGRGHNAREELNQAIMHAEVMAIQEANR 69

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 70 TVGNWRLLDCTLFVTIEPC 88


>gi|292489080|ref|YP_003531967.1| tRNA-specific adenosine deaminase [Erwinia amylovora CFBP1430]
 gi|291554514|emb|CBA22074.1| tRNA-specific adenosine deaminase [Erwinia amylovora CFBP1430]
          Length = 159

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 54/129 (41%), Gaps = 21/129 (16%)

Query: 7   DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
           D  +M  ALR +R  W  G       V  ++V D  VIG G    +  +    HAE+ AL
Sbjct: 6   DEYWMRHALRLARRAWDEGEVP----VGAVLVLDNQVIGEGWNRPIGHHDPTAHAEMMAL 61

Query: 61  EEAG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            + G   E  R    T YVTLEPC        CA  +I   I R+V    D     +G  
Sbjct: 62  RQGGKMIENYRLLDTTLYVTLEPCV------MCAGAMIHSRIGRLVYGARDAKTGAAGSL 115

Query: 116 LQWLSQKGI 124
           L  L   G+
Sbjct: 116 LDVLGHPGM 124


>gi|209558752|ref|YP_002285224.1| Cytosine deaminase [Streptococcus pyogenes NZ131]
 gi|209539953|gb|ACI60529.1| Cytosine deaminase [Streptococcus pyogenes NZ131]
          Length = 171

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 12/89 (13%)

Query: 1  MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
          MP S      FM  AL+ +     L      + C+IVKDG +IGRG  A         HA
Sbjct: 1  MPYSLEEQTYFMQEALKEAE--KSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHA 58

Query: 56 EVQALEEAGEEARG-----ATAYVTLEPC 79
          E+ A+ EA            T +VT+EPC
Sbjct: 59 EMMAINEANAHEGNWRLLDTTLFVTIEPC 87


>gi|253988801|ref|YP_003040157.1| tRNA -specific adenosine deaminase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780251|emb|CAQ83412.1| similar to ecoli yfhc protein, tRNA-specific adenosine deaminase
           [Photorhabdus asymbiotica]
          Length = 169

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V D  +I  G    + A+    HAEV AL + GE+ +       T YVTLEPC+ 
Sbjct: 29  VGAVLVADNEIIAEGWNQSIIAHDPSAHAEVIALRKGGEQLQNYRLLNTTLYVTLEPCA- 87

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 CA  +I   I+R+V    D     +G
Sbjct: 88  -----MCAGAMIHSRIQRLVYGASDMKTGAAG 114


>gi|325288211|ref|YP_004264392.1| tRNA-adenosine deaminase [Syntrophobotulus glycolicus DSM 8271]
 gi|324963612|gb|ADY54391.1| tRNA-adenosine deaminase [Syntrophobotulus glycolicus DSM 8271]
          Length = 148

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 61/147 (41%), Gaps = 22/147 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEAGE 65
           +M  AL+ +     L      +  +IVK+G ++        T      HAE+ A++ A +
Sbjct: 6   WMRLALKQAE--TALEKDEVPIGAVIVKNGEILALAHNEKETNQDPTAHAEMLAIKRAAQ 63

Query: 66  EA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL---- 116
           +       GAT YVTLEPC      P CA  II+  I  +V   DD      G  L    
Sbjct: 64  KLGAWRLSGATLYVTLEPC------PMCAGAIIQSRIETLVYGADDSKGGAVGSVLNVLQ 117

Query: 117 -QWLSQKGIIVDRMMESEGKIFLHAYL 142
            Q  + K  I+  ++E E    L  + 
Sbjct: 118 HQLWNHKVEIITGILEEESARLLKGFF 144


>gi|326790135|ref|YP_004307956.1| CMP/dCMP deaminase zinc-binding protein [Clostridium lentocellum
           DSM 5427]
 gi|326540899|gb|ADZ82758.1| CMP/dCMP deaminase zinc-binding protein [Clostridium lentocellum
           DSM 5427]
          Length = 175

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 49/123 (39%), Gaps = 17/123 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM  AL  +      T     +  +IV    VIGRG     T      HAEV A+ E
Sbjct: 4   DIEFMKQALIEA--EKAFTLDEAPIGAVIVYKEQVIGRGHNRRNTDKNALAHAEVMAINE 61

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +  +       T Y+TLEPC      P C+  I++  + RVV     P     G  L 
Sbjct: 62  ACKHIKDWRLEECTIYITLEPC------PMCSGAIVQARLPRVVFGARSPKAGFGGSVLN 115

Query: 118 WLS 120
            L 
Sbjct: 116 ILQ 118


>gi|229067785|ref|ZP_04201104.1| hypothetical protein bcere0025_110 [Bacillus cereus F65185]
 gi|228715338|gb|EEL67195.1| hypothetical protein bcere0025_110 [Bacillus cereus F65185]
          Length = 166

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 20/136 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  +IV DG VI        T      HAE+ A++EA ++        AT YVTLEPC  
Sbjct: 28  IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDEACKKLGTWRLEDATLYVTLEPC-- 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P CA  I+   ++RVV    DP    +G  +  L+ +       +V  ++E E   
Sbjct: 86  ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVSGVLEEECGT 141

Query: 137 FLHAYLTRQVEKRSHI 152
            L ++     +KR  I
Sbjct: 142 LLTSFFRELRKKRKAI 157


>gi|227824625|ref|ZP_03989457.1| CMP/dCMP deaminase [Acidaminococcus sp. D21]
 gi|226905124|gb|EEH91042.1| CMP/dCMP deaminase [Acidaminococcus sp. D21]
          Length = 153

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 15/85 (17%)

Query: 31  VACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           V  ++V+DG VI R       A+    HAE+  + EA E+ R      +T YVT+EPC  
Sbjct: 30  VGAILVQDGRVIARNHNRRERAHDATAHAEILVIREACEKLRRWRLADSTLYVTMEPC-- 87

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDD 106
               P CA  I    I RVV    D
Sbjct: 88  ----PMCAGAIYNARIGRVVFGASD 108


>gi|310779654|ref|YP_003967987.1| CMP/dCMP deaminase zinc-binding protein [Ilyobacter polytropus DSM
           2926]
 gi|309748977|gb|ADO83639.1| CMP/dCMP deaminase zinc-binding protein [Ilyobacter polytropus DSM
           2926]
          Length = 165

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 37/157 (23%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAY-GGCP-------- 53
           +D  FM  AL  ++      S +PS    AC++ K+  ++G G   +  GC         
Sbjct: 11  WDEYFMGIALLSAK-----RSKDPSTQVGACIVNKENKIVGVGYNGFPKGCSDDNFPWDR 65

Query: 54  -------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                        HAE  A+  + ++    T YV L PC        CA+ II+ GI+ V
Sbjct: 66  EGEFLETKYPFVMHAEQNAILNSIKKLSDCTIYVGLFPCHE------CAKSIIQSGIKEV 119

Query: 101 VVCVDDPDVRVSGRGLQWL-SQKGIIVDRMMESEGKI 136
           V   D  D   S +  + +    G++  ++  SE KI
Sbjct: 120 VFLSDKYDGTDSNKASKMMFDSSGVVYRKLNLSEIKI 156


>gi|283131328|dbj|BAI63333.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae
          subsp. equisimilis]
          Length = 183

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 12/89 (13%)

Query: 1  MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
          MP S      FM  AL+ +     L      + C+IVKDG +IGRG  A         HA
Sbjct: 9  MPYSLEEQTYFMQEALKEAE--KSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHA 66

Query: 56 EVQALEEAGEEARG-----ATAYVTLEPC 79
          E+ A+ EA            T +VT+EPC
Sbjct: 67 EMMAINEANAHEGNWRLLDTTLFVTIEPC 95


>gi|116628523|ref|YP_821142.1| cytidine/deoxycytidylate deaminase family protein, putative
          [Streptococcus thermophilus LMD-9]
 gi|116101800|gb|ABJ66946.1| tRNA-adenosine deaminase [Streptococcus thermophilus LMD-9]
          Length = 172

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
          FMS AL+ +     L      + C+IVKD  ++GRG  A         HAEV A++EA  
Sbjct: 12 FMSEALKEA--QKSLDKAEIPIGCVIVKDREIVGRGHNAREELNQAIMHAEVMAIQEANR 69

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 70 TVGNWRLLDCTLFVTIEPC 88


>gi|30260212|ref|NP_842589.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing
           protein [Bacillus anthracis str. Ames]
 gi|47525273|ref|YP_016622.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing
           protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183056|ref|YP_026308.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing
           protein [Bacillus anthracis str. Sterne]
 gi|49481561|ref|YP_034377.1| cytidine/deoxycytidylate deaminase family protein [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|65317484|ref|ZP_00390443.1| COG0590: Cytosine/adenosine deaminases [Bacillus anthracis str.
           A2012]
 gi|118475795|ref|YP_892946.1| tRNA-adenosine deaminase [Bacillus thuringiensis str. Al Hakam]
 gi|165873229|ref|ZP_02217840.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. A0488]
 gi|167635069|ref|ZP_02393386.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. A0442]
 gi|167642053|ref|ZP_02400280.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. A0193]
 gi|170688894|ref|ZP_02880096.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. A0465]
 gi|170707544|ref|ZP_02897997.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. A0389]
 gi|177655687|ref|ZP_02937012.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. A0174]
 gi|190569336|ref|ZP_03022228.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis Tsiankovskii-I]
 gi|196036359|ref|ZP_03103756.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus W]
 gi|196041943|ref|ZP_03109230.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus NVH0597-99]
 gi|196047685|ref|ZP_03114889.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus 03BB108]
 gi|218901223|ref|YP_002449057.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus AH820]
 gi|225862074|ref|YP_002747452.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus 03BB102]
 gi|227812695|ref|YP_002812704.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. CDC 684]
 gi|228912760|ref|ZP_04076409.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228925275|ref|ZP_04088373.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931524|ref|ZP_04094432.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228943828|ref|ZP_04106215.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229089154|ref|ZP_04220437.1| Uncharacterized deaminase yaaJ [Bacillus cereus Rock3-42]
 gi|229119684|ref|ZP_04248947.1| Uncharacterized deaminase yaaJ [Bacillus cereus 95/8201]
 gi|229182416|ref|ZP_04309669.1| Uncharacterized deaminase yaaJ [Bacillus cereus BGSC 6E1]
 gi|229604522|ref|YP_002864673.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. A0248]
 gi|254686610|ref|ZP_05150469.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. CNEVA-9066]
 gi|254724163|ref|ZP_05185948.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. A1055]
 gi|254737002|ref|ZP_05194707.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. Western North America USA6153]
 gi|254744200|ref|ZP_05201881.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. Kruger B]
 gi|254751191|ref|ZP_05203230.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. Vollum]
 gi|254761661|ref|ZP_05213679.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. Australia 94]
 gi|30253533|gb|AAP24075.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. Ames]
 gi|47500421|gb|AAT29097.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|49176983|gb|AAT52359.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. Sterne]
 gi|49333117|gb|AAT63763.1| probable cytidine/deoxycytidylate deaminase family protein
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|118415020|gb|ABK83439.1| tRNA-adenosine deaminase [Bacillus thuringiensis str. Al Hakam]
 gi|164711027|gb|EDR16593.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. A0488]
 gi|167509987|gb|EDR85406.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. A0193]
 gi|167529543|gb|EDR92293.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. A0442]
 gi|170127540|gb|EDS96414.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. A0389]
 gi|170667118|gb|EDT17879.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. A0465]
 gi|172080027|gb|EDT65127.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. A0174]
 gi|190559558|gb|EDV13551.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis Tsiankovskii-I]
 gi|195990989|gb|EDX54960.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus W]
 gi|196021470|gb|EDX60173.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus 03BB108]
 gi|196027198|gb|EDX65818.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus NVH0597-99]
 gi|218537868|gb|ACK90266.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus AH820]
 gi|225787894|gb|ACO28111.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus 03BB102]
 gi|227005774|gb|ACP15517.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. CDC 684]
 gi|228601062|gb|EEK58629.1| Uncharacterized deaminase yaaJ [Bacillus cereus BGSC 6E1]
 gi|228663775|gb|EEL19352.1| Uncharacterized deaminase yaaJ [Bacillus cereus 95/8201]
 gi|228694177|gb|EEL47857.1| Uncharacterized deaminase yaaJ [Bacillus cereus Rock3-42]
 gi|228815852|gb|EEM62086.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228828142|gb|EEM73868.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228834389|gb|EEM79928.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228846887|gb|EEM91890.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268930|gb|ACQ50567.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. A0248]
          Length = 166

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 73/170 (42%), Gaps = 23/170 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM  A+  ++    +      +  +IV +G VI        T      HAE+ A++E
Sbjct: 6   DIYFMQLAIEEAKKAEAIQEV--PIGAVIVLNGEVISAAHNLRETEQRSIAHAELLAIDE 63

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  + 
Sbjct: 64  ACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGAGDPKGGCAGTLMN 117

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            L+ +       +V  ++E E    L  +  R++ K+     K+  S +N
Sbjct: 118 LLTDERFNHQCEVVAGVLEEECGTLLTNFF-RELRKKRKAIKKLEKSNEN 166


>gi|303257995|ref|ZP_07344004.1| cytidine/deoxycytidylate deaminase family protein [Burkholderiales
           bacterium 1_1_47]
 gi|302859338|gb|EFL82420.1| cytidine/deoxycytidylate deaminase family protein [Burkholderiales
           bacterium 1_1_47]
          Length = 138

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 32/122 (26%)

Query: 30  SVACLIVKDGIVIGRGV----TAYGGC---------------PHAEVQA---LEEAGEEA 67
            V C+IVK+  +I  G     T Y  C                HAE+ A   L + G  +
Sbjct: 27  KVGCVIVKNHSIISFGWNGMPTGYDNCCEYEVDGKLVTRPEVQHAELNAIAKLAQNGYSS 86

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            GA  ++T  PC H      C+  I +CGI  V    +  D      G+Q+L + GI V+
Sbjct: 87  NGAKIFITHSPCIH------CSLLIQKCGINEVYYHENYRD----DAGIQFLKKAGIKVE 136

Query: 128 RM 129
           ++
Sbjct: 137 QL 138


>gi|78043781|ref|YP_361468.1| cytidine/deoxycytidylate deaminase family protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995896|gb|ABB14795.1| cytidine/deoxycytidylate deaminase family protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 153

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 17/107 (15%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64
           +FM+ AL+ +     L    P V  ++V +G +IGRG     T      HAE+ AL+EA 
Sbjct: 5   KFMAEALKEAE-KAALQGEVP-VGAVVVYNGEIIGRGHNLRETFSDPTAHAEIVALKEAA 62

Query: 65  EEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
            + +       T YVT+EPC      P CA  I +  I+ +V    D
Sbjct: 63  SKLKNWQLKDCTLYVTVEPC------PMCAGAIYQARIKTLVYGAPD 103


>gi|238788214|ref|ZP_04632009.1| tRNA-specific adenosine deaminase [Yersinia frederiksenii ATCC
           33641]
 gi|238723801|gb|EEQ15446.1| tRNA-specific adenosine deaminase [Yersinia frederiksenii ATCC
           33641]
          Length = 191

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V D  VIG G    +       HAE+ AL + G   +      AT YVTLEPC  
Sbjct: 54  VGAILVLDNQVIGEGWNRPIRDNDPTAHAEIMALRQGGRAVQNYRLIDATLYVTLEPCVM 113

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  ++   IRR+V   +D     +G  L  L   G+
Sbjct: 114 ------CAGAMVHSRIRRLVYGANDLKTGAAGSLLDILRHPGM 150


>gi|206972670|ref|ZP_03233610.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus AH1134]
 gi|228950569|ref|ZP_04112705.1| hypothetical protein bthur0006_110 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229077294|ref|ZP_04209977.1| hypothetical protein bcere0023_200 [Bacillus cereus Rock4-2]
 gi|229176621|ref|ZP_04304027.1| hypothetical protein bcere0005_100 [Bacillus cereus 172560W]
 gi|206732390|gb|EDZ49572.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus AH1134]
 gi|228606851|gb|EEK64266.1| hypothetical protein bcere0005_100 [Bacillus cereus 172560W]
 gi|228706017|gb|EEL58322.1| hypothetical protein bcere0023_200 [Bacillus cereus Rock4-2]
 gi|228809112|gb|EEM55595.1| hypothetical protein bthur0006_110 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 166

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 20/136 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  +IV DG VI        T      HAE+ A++EA ++        AT YVTLEPC  
Sbjct: 28  IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDEACKKLGTWRLEDATLYVTLEPC-- 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P CA  I+   ++RVV    DP    +G  +  L+ +       +V  ++E E   
Sbjct: 86  ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVSGVLEEECGT 141

Query: 137 FLHAYLTRQVEKRSHI 152
            L ++     +KR  I
Sbjct: 142 LLTSFFRELRKKRKAI 157


>gi|292900205|ref|YP_003539574.1| tRNA-specific adenosine deaminase [Erwinia amylovora ATCC 49946]
 gi|291200053|emb|CBJ47178.1| tRNA-specific adenosine deaminase [Erwinia amylovora ATCC 49946]
          Length = 164

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 54/129 (41%), Gaps = 21/129 (16%)

Query: 7   DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
           D  +M  ALR +R  W  G       V  ++V D  VIG G    +  +    HAE+ AL
Sbjct: 11  DEYWMRHALRLARRAWDEG----EVPVGAVLVLDNQVIGEGWNRPIGHHDPTAHAEMMAL 66

Query: 61  EEAG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            + G   E  R    T YVTLEPC        CA  +I   I R+V    D     +G  
Sbjct: 67  RQGGKMIENYRLLDTTLYVTLEPCV------MCAGAMIHSRIGRLVYGARDAKTGAAGSL 120

Query: 116 LQWLSQKGI 124
           L  L   G+
Sbjct: 121 LDVLGHPGM 129


>gi|167855119|ref|ZP_02477891.1| hypothetical protein HPS_06809 [Haemophilus parasuis 29755]
 gi|167853754|gb|EDS24996.1| hypothetical protein HPS_06809 [Haemophilus parasuis 29755]
          Length = 157

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 15/87 (17%)

Query: 29  PSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPC 79
           P  A L+ K G +IG    R +       HAE+QA+  AG++ +       T YVTLEPC
Sbjct: 18  PVGAVLVDKTGNIIGEGWNRAIILSDPTAHAEIQAIRMAGQQLQNYRLLDTTLYVTLEPC 77

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDD 106
           +       CA  I+   I R+V    D
Sbjct: 78  T------MCAGAILHSRIGRLVFGASD 98


>gi|145355155|ref|XP_001421833.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582072|gb|ABP00127.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 125

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 40/126 (31%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYG-GCP------- 53
           S+D  FMS A   ++      S +P+    AC++ KD +++G G   +  GCP       
Sbjct: 6   SWDDYFMSVAFLSAQ-----RSKDPNKQVGACIVGKDKLILGVGYNGFPRGCPDNALPWS 60

Query: 54  -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                            HAE+ A + +      G + +VT+ PC+       CA+ +I+ 
Sbjct: 61  KKSANDDPLETKYAYVCHAEMNAIMNKNSASVAGGSLFVTMYPCNE------CAKLVIQA 114

Query: 96  GIRRVV 101
           GI+ VV
Sbjct: 115 GIKEVV 120


>gi|312862370|ref|ZP_07722613.1| cytidine and deoxycytidylate deaminase zinc-binding region
          [Streptococcus vestibularis F0396]
 gi|311102013|gb|EFQ60213.1| cytidine and deoxycytidylate deaminase zinc-binding region
          [Streptococcus vestibularis F0396]
          Length = 172

 Score = 40.4 bits (93), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
          FMS AL+ +     L      + C+IVKD  ++GRG  A         HAEV A++EA  
Sbjct: 12 FMSEALKEA--QKSLDKAEIPIGCVIVKDREIVGRGHNAREELNQAIMHAEVMAIQEANR 69

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 70 TVGNWRLLDCTLFVTIEPC 88


>gi|228898775|ref|ZP_04063059.1| hypothetical protein bthur0014_110 [Bacillus thuringiensis IBL
           4222]
 gi|228860867|gb|EEN05243.1| hypothetical protein bthur0014_110 [Bacillus thuringiensis IBL
           4222]
          Length = 166

 Score = 40.4 bits (93), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 21/146 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  +IV DG VI        T      HAE+ A++EA ++        AT YVTLEPC  
Sbjct: 28  IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDEACKKLGTWRLEDATLYVTLEPC-- 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P CA  I+   ++RVV    DP    +G  +  L+ +       +V  ++E E   
Sbjct: 86  ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVTGVLEEECGT 141

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDN 162
            L  +  R++ K+     K+  S  N
Sbjct: 142 LLTNFF-RELRKKRKAIKKLEKSNGN 166


>gi|109899420|ref|YP_662675.1| CMP/dCMP deaminase, zinc-binding [Pseudoalteromonas atlantica T6c]
 gi|109701701|gb|ABG41621.1| tRNA-adenosine deaminase [Pseudoalteromonas atlantica T6c]
          Length = 162

 Score = 40.4 bits (93), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++VKD  ++G G    +T      HAE+ A+ +AG   +       T YVTLEPC+ 
Sbjct: 28  VGAVLVKDQKIVGEGWNQSITLNDPSAHAEMLAIRQAGINVKNYRLIDTTLYVTLEPCTM 87

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 CA  ++   I+R+V    D     +G
Sbjct: 88  ------CAGLLVHSRIKRLVFGAYDAKTGAAG 113


>gi|292669313|ref|ZP_06602739.1| deoxycytidylate deaminase [Selenomonas noxia ATCC 43541]
 gi|292649154|gb|EFF67126.1| deoxycytidylate deaminase [Selenomonas noxia ATCC 43541]
          Length = 158

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 63/157 (40%), Gaps = 42/157 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53
           S+D  FM  A+ FS +     S +P     AC++ +D  ++G G   Y G P        
Sbjct: 4   SWDEYFMGVAI-FSAYR----SKDPHTQVGACIVNEDKHIVGVG---YNGMPNGCDDSVY 55

Query: 54  -----------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                            HAE+ A+  A    +G   YV+L PC+       C + II+ G
Sbjct: 56  PWGRTGDFADQKYPYVVHAELNAILNASTSLKGCRIYVSLFPCNE------CCKAIIQSG 109

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
           IR VV   D      S +  + +     +  R ME++
Sbjct: 110 IREVVYLSDKYAATDSTKASKRMLASAGVTCRRMETD 146


>gi|260913765|ref|ZP_05920241.1| tRNA-specific adenosine deaminase [Pasteurella dagmatis ATCC 43325]
 gi|260632304|gb|EEX50479.1| tRNA-specific adenosine deaminase [Pasteurella dagmatis ATCC 43325]
          Length = 170

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 16/112 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59
           S  D ++M  AL  +     L    P  A L+ ++G V+G G    +       HAE+ A
Sbjct: 3   SDLDEKWMRYALELADKAEQLGEI-PVGAVLVDEEGNVLGEGWNLSIIESDPTAHAEIVA 61

Query: 60  LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           L + G+  +       T YVTLEPC+       CA  I+   I+R+V    D
Sbjct: 62  LRQGGKTLQNYRLVNTTLYVTLEPCTM------CAGAILHSRIKRLVFGASD 107


>gi|70990810|ref|XP_750254.1| cytosine deaminase [Aspergillus fumigatus Af293]
 gi|119496775|ref|XP_001265161.1| cytosine deaminase, putative [Neosartorya fischeri NRRL 181]
 gi|66847886|gb|EAL88216.1| cytosine deaminase, putative [Aspergillus fumigatus Af293]
 gi|119413323|gb|EAW23264.1| cytosine deaminase, putative [Neosartorya fischeri NRRL 181]
 gi|159130729|gb|EDP55842.1| cytosine deaminase, putative [Aspergillus fumigatus A1163]
          Length = 148

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 38/82 (46%), Gaps = 14/82 (17%)

Query: 29  PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG----EEARGATAYVTLEPCS 80
           P  A L+ KDG ++GRG    V       HAE+ ALE +G        GAT Y TL PC 
Sbjct: 24  PIGAALVSKDGKILGRGHNMRVQKGSATLHAEMSALENSGRLPASAYEGATMYTTLSPCD 83

Query: 81  HYGRSPPCAQFIIECGIRRVVV 102
                  C    I   ++RVV+
Sbjct: 84  M------CTGACILYKVKRVVI 99


>gi|313894732|ref|ZP_07828293.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320531057|ref|ZP_08032086.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Selenomonas artemidis F0399]
 gi|312976641|gb|EFR42095.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320136639|gb|EFW28592.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Selenomonas artemidis F0399]
          Length = 159

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 64/157 (40%), Gaps = 42/157 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53
           ++D  FM  A+ FS +     S +P     AC++ +D  ++G G   Y G P        
Sbjct: 4   TWDEYFMGIAI-FSAYR----SKDPHTQVGACIVNEDKHIVGVG---YNGMPNGCDDSEY 55

Query: 54  -----------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                            HAE+ A+  A    +G   YV+L PC+       C + II+ G
Sbjct: 56  PWGRTGEFADQKYPYVVHAELNAILNASTSLKGCRIYVSLFPCNE------CCKAIIQSG 109

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
           IR VV   D      S +  + +     +V R ME++
Sbjct: 110 IREVVYLSDKYAATDSTKASKRMLASAGVVCRRMETD 146


>gi|269121089|ref|YP_003309266.1| CMP/dCMP deaminase zinc-binding protein [Sebaldella termitidis ATCC
           33386]
 gi|268614967|gb|ACZ09335.1| CMP/dCMP deaminase zinc-binding protein [Sebaldella termitidis ATCC
           33386]
          Length = 164

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 37/160 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGV--------------- 46
           S++  FM  AL       G  S +P+    AC+I +D  ++G G                
Sbjct: 9   SWNEYFMGLALL-----SGKRSKDPTTQVGACIIDEDKKIVGIGYNGFPLGSSDDNMPWG 63

Query: 47  -------TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                  T Y    HAE+ A+  + +  +G T YVT  PC+       CA+ I++  I R
Sbjct: 64  KQGDFLETKYPYVVHAELNAILNSIKSLKGCTVYVTHFPCNE------CAKAIVQSKISR 117

Query: 100 VVVCVDDPDVRVSGRGLQW-LSQKGIIVDRMMESEGKIFL 138
           V+   D    + S +  +  L   GI ++++     KI L
Sbjct: 118 VIYLSDKHKDKDSFKASKRILENAGIKIEKISFGSKKIIL 157


>gi|219870714|ref|YP_002475089.1| tRNA-adenosine deaminase [Haemophilus parasuis SH0165]
 gi|219690918|gb|ACL32141.1| tRNA-adenosine deaminase, cytosine/adenosine deaminases
           [Haemophilus parasuis SH0165]
          Length = 157

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 15/87 (17%)

Query: 29  PSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPC 79
           P  A L+ K G +IG    R +       HAE+QA+  AG++ +       T YVTLEPC
Sbjct: 18  PVGAVLVDKTGNIIGEGWNRAIILSDPTAHAEIQAIRMAGQQIQNYRLLDTTLYVTLEPC 77

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDD 106
           +       CA  I+   I R+V    D
Sbjct: 78  T------MCAGAILHSRIGRLVFGASD 98


>gi|320539250|ref|ZP_08038920.1| putative cytidine and deoxycytidylate deaminase zinc-binding
           protein [Serratia symbiotica str. Tucson]
 gi|320030642|gb|EFW12651.1| putative cytidine and deoxycytidylate deaminase zinc-binding
           protein [Serratia symbiotica str. Tucson]
          Length = 170

 Score = 40.4 bits (93), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  L+V D  VIG G    +  +    HAE+ AL + G   +  R   AT YVTLEPC  
Sbjct: 29  VGALLVLDNQVIGEGWNRPIGRHDPTAHAEIMALRQGGAVLQNYRLLNATLYVTLEPCVM 88

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  ++   IRR+V    D     +G  +  L   G+
Sbjct: 89  ------CAGAMVHSRIRRLVYGTADEKTGAAGSLMDILRHPGM 125


>gi|313206574|ref|YP_004045751.1| cmp/dcmp deaminase zinc-binding protein [Riemerella anatipestifer
           DSM 15868]
 gi|312445890|gb|ADQ82245.1| CMP/dCMP deaminase zinc-binding protein [Riemerella anatipestifer
           DSM 15868]
 gi|315023430|gb|EFT36438.1| tRNA-specific adenosine-34 deaminase [Riemerella anatipestifer
           RA-YM]
 gi|325335978|gb|ADZ12252.1| Cytosine/adenosine deaminase [Riemerella anatipestifer RA-GD]
          Length = 143

 Score = 40.4 bits (93), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 46/109 (42%), Gaps = 17/109 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  FM  A  F    +        V C+IV +  VI RG     T      HAE+Q++  
Sbjct: 4   DEYFMRMA--FQEALIAFEKDEVPVGCVIVHNERVIARGYNLTETLNDVTAHAEMQSITS 61

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           A     G+  +  T YVTLEPC+       CA  +    I RVV+   D
Sbjct: 62  AANALGGKYLKDCTMYVTLEPCT------MCAGALFWSQISRVVIGARD 104


>gi|120554632|ref|YP_958983.1| CMP/dCMP deaminase, zinc-binding [Marinobacter aquaeolei VT8]
 gi|120324481|gb|ABM18796.1| tRNA-adenosine deaminase [Marinobacter aquaeolei VT8]
          Length = 167

 Score = 40.4 bits (93), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 15/86 (17%)

Query: 31  VACLIVKDGIVIGRGVTA-YGGC---PHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           V  ++V+DG  +G G  A   GC    HAE++AL +A          GAT YVTLEPC+ 
Sbjct: 30  VGAIVVRDGKELGVGYNAPITGCDPTAHAEIRALRDASARVGNYRLTGATLYVTLEPCTM 89

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDP 107
                 C   I+   I R+V    +P
Sbjct: 90  ------CVGAIVHSRISRLVYGAREP 109


>gi|228918972|ref|ZP_04082353.1| hypothetical protein bthur0011_100 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840687|gb|EEM85947.1| hypothetical protein bthur0011_100 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 166

 Score = 40.4 bits (93), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 21/146 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  +IV DG VI        T      HAE+ A++EA ++        AT YVTLEPC  
Sbjct: 28  IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDEACKKLGTWRLEDATLYVTLEPC-- 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P CA  I+   ++RVV    DP    +G  +  L+ +       +V  ++E E   
Sbjct: 86  ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVSGVLEEECGT 141

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDN 162
            L  +  R++ K+     K+  + +N
Sbjct: 142 LLTNFF-RELRKKRKAIKKLGGNTEN 166


>gi|283131399|dbj|BAI63401.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae
          subsp. equisimilis]
          Length = 175

 Score = 40.4 bits (93), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
          FM  AL+ +     L      + C+IVKDG +IGRG  A         HAE+ A+ EA  
Sbjct: 11 FMQEALKEA--EKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANA 68

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 69 HEGNWRLLDTTLFVTIEPC 87


>gi|223939608|ref|ZP_03631483.1| CMP/dCMP deaminase zinc-binding [bacterium Ellin514]
 gi|223891766|gb|EEF58252.1| CMP/dCMP deaminase zinc-binding [bacterium Ellin514]
          Length = 168

 Score = 40.4 bits (93), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 70/169 (41%), Gaps = 37/169 (21%)

Query: 7   DARFMSAALR-----FSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEV 57
           D  FM  ALR     + R  V        +  +IV++G +I R      T      HAE+
Sbjct: 12  DNYFMGEALRQAVKAYDREEV-------PIGAVIVREGRIIARAFNQVETLKDATAHAEM 64

Query: 58  QALEEAGEEARG------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
            A+ +A E A G       T YVT EPC      P CA  I+   + RVV  + DP    
Sbjct: 65  LAITQA-EAAVGDWRLNECTLYVTKEPC------PMCAGAIVHVRLSRVVFGLSDPKGGG 117

Query: 112 SGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
           +G  +       L+ +  I   + E E +  L  + +   E+R+   L+
Sbjct: 118 AGGAMNLLQFPTLNHRAEITHGVREQECRSLLQQFFS---EQRAQAKLR 163


>gi|85059758|ref|YP_455460.1| tRNA-specific adenosine deaminase [Sodalis glossinidius str.
           'morsitans']
 gi|84780278|dbj|BAE75055.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 169

 Score = 40.4 bits (93), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V +G +IG G    +  +    HAE+ AL + G++A       AT YVTLEPC  
Sbjct: 29  VGAVLVLNGAIIGEGWNRSIGHHDPTAHAEIMALRQGGQQAGNYRLLKATLYVTLEPCVM 88

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  +I   I R+V    D     +G  +  L   G+
Sbjct: 89  ------CAGAMIHARIGRLVFGARDEKTGAAGSLMDVLGHPGM 125


>gi|117617810|ref|YP_857319.1| tRNA-specific adenosine deaminase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559217|gb|ABK36165.1| tRNA-specific adenosine deaminase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 179

 Score = 40.4 bits (93), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 17/116 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D R+M  A+  +    G+      V  ++V  G V+G G    ++ +  C HAEV A+  
Sbjct: 16  DERWMRHAMALAARAEGIGEI--PVGAVLVLGGEVVGEGWNRSISEHDACAHAEVMAIRA 73

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AG   +       T YVTLEPC        CA  +I   ++RVV    D     +G
Sbjct: 74  AGVRLQNYRLLDTTLYVTLEPCCM------CAGALIHSRVKRVVYGARDLKTGAAG 123


>gi|53804620|ref|YP_113769.1| cytosine deaminase [Methylococcus capsulatus str. Bath]
 gi|53758381|gb|AAU92672.1| cytosine deaminase [Methylococcus capsulatus str. Bath]
          Length = 145

 Score = 40.4 bits (93), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 16/101 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65
           ++ AA+  +R   GL      +  ++V DG ++GRG    V       HAE+  LE AG 
Sbjct: 4   YLQAAIAEAR--KGLEEGGIPIGSVLVIDGEIVGRGRNRRVQKGSAILHAEMDCLENAGR 61

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
               E R AT Y TL PC        C+  I+  GI RVV 
Sbjct: 62  LSAAEYRRATLYSTLSPCDM------CSGAILLYGIPRVVA 96


>gi|77361256|ref|YP_340831.1| tRNA-specific adenosine deaminase [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876167|emb|CAI87389.1| tRNA-specific adenosine deaminase [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 168

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 17/124 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEE 62
           D  +M  AL +++    L      V  ++VKD  ++     R +T      HAE+ A+ +
Sbjct: 7   DNYWMQQALTYAKQAEQLDEI--PVGAILVKDNQLVAAGYNRSITDNDPSAHAEMMAVRK 64

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            G+          T YVTLEPCS       CA  ++   I+R+V    D     +G  + 
Sbjct: 65  GGKALNNYRLIDCTLYVTLEPCSM------CAGLLVHSRIKRLVFGAADAKTGSAGSIMN 118

Query: 118 WLSQ 121
            L +
Sbjct: 119 LLQE 122


>gi|297623312|ref|YP_003704746.1| tRNA(Ile)-lysidine synthetase [Truepera radiovictrix DSM 17093]
 gi|297164492|gb|ADI14203.1| tRNA(Ile)-lysidine synthetase [Truepera radiovictrix DSM 17093]
          Length = 556

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 17/109 (15%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG--VTAYGGCP--HAEV 57
           P    DAR+M  AL  +R           V  ++V+ G V+GRG   T   G P  HAE+
Sbjct: 398 PAPDEDARWMRLALNEAR--RAAERGELPVGAVVVRGGAVLGRGHNTTRESGDPSAHAEL 455

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
            A+ +A          G T +VTLEPC      P C   ++   + RVV
Sbjct: 456 HAIRQAAAALGDWRLAGCTLFVTLEPC------PMCFGALLSAHLPRVV 498


>gi|283131386|dbj|BAI63389.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae
          subsp. equisimilis]
          Length = 183

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
          FM  AL+ +     L      + C+IVKDG +IGRG  A         HAE+ A+ EA  
Sbjct: 19 FMQEALKEAE--KSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANA 76

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 77 HEGNWRLLDTTLFVTIEPC 95


>gi|51245291|ref|YP_065175.1| hypothetical protein DP1439 [Desulfotalea psychrophila LSv54]
 gi|50876328|emb|CAG36168.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 166

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 17/120 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQ 58
           + + DA +M  AL  +    G     P V  ++V+DG +I  G    +T      HAE+ 
Sbjct: 6   IEARDALWMGYALDEAA-RAGANGEVP-VGAVLVQDGELIATGLNGMITHNDPSAHAEIV 63

Query: 59  ALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL +AG+         AT YVTLEPC        C   II+  I+R+V    D     +G
Sbjct: 64  ALRQAGQVLNNYRFPEATLYVTLEPCIM------CMGAIIQARIKRLVFAAFDTKTGAAG 117


>gi|118397|sp|P00814|DCTD_BPT2 RecName: Full=Deoxycytidylate deaminase; AltName: Full=dCMP
           deaminase
          Length = 188

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 9/53 (16%)

Query: 54  HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           HAE+ A+      G    GAT YVTL PC      P CA+ I + GI+++V C
Sbjct: 104 HAELNAILFAARNGSSIEGATMYVTLSPC------PDCAKAIAQSGIKKLVYC 150


>gi|19745357|ref|NP_606493.1| hypothetical protein spyM18_0196 [Streptococcus pyogenes
          MGAS8232]
 gi|73921072|sp|Q8P2R7|Y196_STRP8 RecName: Full=Uncharacterized deaminase spyM18_0196
 gi|19747462|gb|AAL96992.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
          Length = 159

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 12/89 (13%)

Query: 1  MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHA 55
          MP S      FM  AL+ +     L      + C+IVKDG +IGRG  A         HA
Sbjct: 1  MPYSLEEQTYFMQEALKEAE--KSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHA 58

Query: 56 EVQALEEAGEEARG-----ATAYVTLEPC 79
          E+ A+ EA            T +VT+EPC
Sbjct: 59 EMMAINEANAHEGNWRLLDTTLFVTIEPC 87


>gi|288931740|ref|YP_003435800.1| CMP/dCMP deaminase zinc-binding protein [Ferroglobus placidus DSM
           10642]
 gi|288893988|gb|ADC65525.1| CMP/dCMP deaminase zinc-binding protein [Ferroglobus placidus DSM
           10642]
          Length = 149

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 61/158 (38%), Gaps = 49/158 (31%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           S D  FM  A   ++     T    +V  +IVKD  ++    T Y G P           
Sbjct: 4   SLDEYFMEIAKVVAKRS---TCLRQNVGAVIVKDKRILS---TGYNGAPMGLPHCLDIGC 57

Query: 54  -------------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQF 91
                              HAE  A+ +A   G   +GAT Y T +PC        CA+ 
Sbjct: 58  LREELNVPSGERHELCRAVHAEQNAIIQAAVHGVSIKGATLYTTHQPCIM------CAKM 111

Query: 92  IIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           II  GI RVV      D     RGL++L + GI +D +
Sbjct: 112 IINAGIVRVVYGKRYAD----ERGLEFLKEAGIKIDYL 145


>gi|78776348|ref|YP_392663.1| CMP/dCMP deaminase, zinc-binding [Sulfurimonas denitrificans DSM
           1251]
 gi|78496888|gb|ABB43428.1| CMP/dCMP deaminase, zinc-binding [Sulfurimonas denitrificans DSM
           1251]
          Length = 145

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 42/125 (33%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
           D  F++ A+  ++        +  V  +IVKDG ++  G   Y G P             
Sbjct: 4   DENFINIAIEIAK---ASKCVSKQVGAVIVKDGRILSTG---YNGTPAGYINCREHWEDK 57

Query: 54  --------------HAEVQALEEAGEEA---RGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                         HAE+ A+  A  +      AT YVTLEPCS       C++ II  G
Sbjct: 58  YTHEHHEWSKTYEIHAEMNAIIWAARKGISIENATIYVTLEPCS------ECSKNIIASG 111

Query: 97  IRRVV 101
           I+R+V
Sbjct: 112 IQRIV 116


>gi|257453281|ref|ZP_05618580.1| deoxycytidylate deaminase [Fusobacterium sp. 3_1_5R]
 gi|257467124|ref|ZP_05631435.1| deoxycytidylate deaminase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315918255|ref|ZP_07914495.1| deoxycytidylate deaminase [Fusobacterium gonidiaformans ATCC 25563]
 gi|317059814|ref|ZP_07924299.1| deoxycytidylate deaminase [Fusobacterium sp. 3_1_5R]
 gi|313685490|gb|EFS22325.1| deoxycytidylate deaminase [Fusobacterium sp. 3_1_5R]
 gi|313692130|gb|EFS28965.1| deoxycytidylate deaminase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 160

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 67/172 (38%), Gaps = 58/172 (33%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53
           ++D  FM  AL        + S +P+    AC++  D  +IG G   Y G P        
Sbjct: 8   TWDEYFMGVALL-----SAMRSKDPNTQVGACIVSPDKKIIGLG---YNGLPKGCEDDEF 59

Query: 54  -----------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                            HAE+ A+  + +  +  T YV L PC        C++ II+ G
Sbjct: 60  PWEREGEFLETKYPYVCHAELNAILNSTQSLKNCTIYVALFPCHE------CSKAIIQSG 113

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
           IR +V   D              ++  I   RM++S G ++      R++EK
Sbjct: 114 IREIVYLSDKYAE----------TESNIASKRMLDSAGVVY------RKLEK 149


>gi|160914266|ref|ZP_02076487.1| hypothetical protein EUBDOL_00276 [Eubacterium dolichum DSM 3991]
 gi|158433893|gb|EDP12182.1| hypothetical protein EUBDOL_00276 [Eubacterium dolichum DSM 3991]
          Length = 170

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 6/59 (10%)

Query: 47  TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           T Y    HAE+ A+  +    +G + YV+L PC+       CA+ II+ GIRRVV   D
Sbjct: 79  TKYPYVVHAELNAILNSSTNLQGCSIYVSLFPCNE------CAKAIIQSGIRRVVYESD 131


>gi|330858731|ref|YP_004415106.1| putative deoxycytidylate deaminase [Shigella phage Shfl2]
 gi|327397665|gb|AEA73167.1| putative deoxycytidylate deaminase [Shigella phage Shfl2]
          Length = 193

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 9/53 (16%)

Query: 54  HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           HAE+ A+      G    GAT YVTL PC      P CA+ I + GI+++V C
Sbjct: 104 HAELNAILFAARNGSSIEGATMYVTLSPC------PDCAKAIAQSGIKKLVYC 150


>gi|237745836|ref|ZP_04576316.1| tRNA-specific adenosine deaminase [Oxalobacter formigenes HOxBLS]
 gi|229377187|gb|EEO27278.1| tRNA-specific adenosine deaminase [Oxalobacter formigenes HOxBLS]
          Length = 150

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 22/156 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM AAL   +  +   +    V  ++V +G VI  G    ++ +    HAE+ AL  
Sbjct: 3   DDVFMRAAL--DQAALAKEAGEVPVGAVVVLEGRVIASGFNCPISRHDPTAHAEIMALRN 60

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +            YVTLEPCS       CA  +I   ++RVV    DP     G  + 
Sbjct: 61  AAKICGNYRLPACELYVTLEPCSM------CAGAMIHARLKRVVFGAFDPKTGACGSVVD 114

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEK 148
              QK +     +   +++ E  + L  +   + +K
Sbjct: 115 LFGQKELNHHTTVTSGVLQDECSLLLKMFFAERRKK 150


>gi|111224596|ref|YP_715390.1| putative riboflavin/cytosine deaminase [Frankia alni ACN14a]
 gi|111152128|emb|CAJ63855.1| Putative riboflavin/cytosine deaminase [Frankia alni ACN14a]
          Length = 187

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 69  GATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           GAT Y +LEPCS     P  C + I+  GI RVV    +P + V   G + L+  G+ V
Sbjct: 109 GATVYSSLEPCSARASRPWTCTELILAAGIGRVVFAWREPSLFVDCDGAERLAAAGVEV 167


>gi|2493560|sp|P78594|FCA1_CANAL RecName: Full=Cytosine deaminase; AltName: Full=Cytosine
           aminohydrolase
 gi|1762320|gb|AAC15782.1| cytosine deaminase [Candida albicans]
          Length = 150

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 24/111 (21%)

Query: 29  PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG----EEARGATAYVTLEPCS 80
           P  +C+I  D  V+G+G    +  +    H E+ ALE AG    +  +  T Y TL PCS
Sbjct: 26  PIGSCIISSDDTVLGQGHNERIQKHSAILHGEMSALENAGRLPGKTYKDCTIYTTLSPCS 85

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
                  C   I+  G +RVV+          G  + +L  + ++++  +E
Sbjct: 86  M------CTGAILLYGFKRVVM----------GENVNFLGNEKLLIENGVE 120


>gi|312864368|ref|ZP_07724601.1| cytidine and deoxycytidylate deaminase zinc-binding region
          [Streptococcus downei F0415]
 gi|311100089|gb|EFQ58300.1| cytidine and deoxycytidylate deaminase zinc-binding region
          [Streptococcus downei F0415]
          Length = 157

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
          FM  AL+ ++    L      + C+IVKDG +IGRG  A         HAE+ A+ +A +
Sbjct: 12 FMQEALKEAQ--KSLAKEEIPIGCVIVKDGQIIGRGHNAREELNQAIMHAEIMAINQANQ 69

Query: 66 EARG-----ATAYVTLEPC 79
                   +  +VT+EPC
Sbjct: 70 TEGNWRLLDSALFVTIEPC 88


>gi|289675579|ref|ZP_06496469.1| riboflavin biosynthesis protein RibD:riboflavin-specific deaminase,
           C-terminal [Pseudomonas syringae pv. syringae FF5]
          Length = 178

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 37/170 (21%)

Query: 199 TVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           TVLAD   LT R + L             +P+R+++D   ++ LD+   +       ++V
Sbjct: 2   TVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLRVPLDAPFFQAG---SALVV 58

Query: 249 T-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
           T           E    +LALA    ++        DL++L+  L  RGV  +LVE G  
Sbjct: 59  TCAAASARGRYQEEGHEMLALADSAGHV--------DLRRLMGELAARGVNEVLVEAGPR 110

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEE--GYLEKNFMCVR 342
           +A +F    LVD   L+ +   +G    P    PL +    LE N M +R
Sbjct: 111 LAGAFARLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIMEMR 160


>gi|229823590|ref|ZP_04449659.1| hypothetical protein GCWU000282_00889 [Catonella morbi ATCC 51271]
 gi|229787034|gb|EEP23148.1| hypothetical protein GCWU000282_00889 [Catonella morbi ATCC 51271]
          Length = 178

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 15/86 (17%)

Query: 31  VACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           +  L+VKDG+++          +    HAE+ A+E A +        G T YVTLEPC  
Sbjct: 37  IGALLVKDGVLLASAYNLREVNHQATAHAELLAIEAANQALGAWRLEGCTLYVTLEPC-- 94

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDP 107
               P CA  ++   + +VV    DP
Sbjct: 95  ----PMCAGALVLSRVDQVVYGASDP 116


>gi|104780171|ref|YP_606669.1| deoxycytidylate deaminase [Pseudomonas entomophila L48]
 gi|95109158|emb|CAK13855.1| putative deoxycytidylate deaminase [Pseudomonas entomophila L48]
          Length = 575

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 20/115 (17%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPP 87
           VA LI   GI   + +T YG   HAE++AL      G  A  +T Y T  PC +      
Sbjct: 414 VAPLIKDSGI---KDITEYGRVVHAEMEALLSSSRVGVSAVDSTLYCTTYPCHN------ 464

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
           CA+ II  G+ RVV     P  +      Q      I ++R   S   +F  A++
Sbjct: 465 CAKHIIAAGVERVVYVEPYPKSKA-----QKFHSDSISLER---SRKGVFFDAFI 511


>gi|331086590|ref|ZP_08335668.1| hypothetical protein HMPREF0987_01971 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410423|gb|EGG89855.1| hypothetical protein HMPREF0987_01971 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 163

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 17/116 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
           D ++M  A+R ++    L      + C+IV    +I RG            HAE+ A+++
Sbjct: 4   DEKYMKEAIRQAKKAYALKEV--PIGCVIVYQDKIIARGYNRRTIDKNTLAHAELIAIKK 61

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A  +         T YVTLEPC        C+  I++  +++VVV   +P    +G
Sbjct: 62  ASRKMDDWRLEDCTMYVTLEPCQM------CSGAIVQSRMKKVVVGCMNPKAGCAG 111


>gi|238753915|ref|ZP_04615275.1| tRNA-specific adenosine deaminase [Yersinia ruckeri ATCC 29473]
 gi|238707903|gb|EEQ00261.1| tRNA-specific adenosine deaminase [Yersinia ruckeri ATCC 29473]
          Length = 171

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 71/170 (41%), Gaps = 22/170 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD---GIVIGRGVTAYGGCPHAEV 57
           M     D  +M  AL  ++         P  A L++ +   GI   R +  +    HAE+
Sbjct: 1   MSTEYNDEYWMRQALELAQ-RAQEEGEVPVGAVLVLDNQAIGIGWNRPIVHHDPTAHAEM 59

Query: 58  QALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL + G+  +      AT YVTLEPC        CA  ++   IRR+V   +D     +
Sbjct: 60  MALRQGGQALQNYRLLNATLYVTLEPCVM------CAGAMVHSRIRRLVYGANDIKTGAA 113

Query: 113 GRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
           G  L  L   G+     I   ++  E    L  +  ++ E++   TLK+A
Sbjct: 114 GSLLDILRHPGMNHQVEITAGVLAEECSQTLSTFFRQRREQQK--TLKLA 161


>gi|116326433|ref|YP_803153.1| dCMP deaminase [Enterobacteria phage RB32]
 gi|228861145|ref|YP_002854168.1| dCMP deaminase [Enterobacteria phage RB51]
 gi|228861526|ref|YP_002854547.1| dCMP deaminase [Enterobacteria phage RB14]
 gi|115344026|gb|ABI95035.1| dCMP deaminase [Enterobacteria phage RB32]
 gi|227438542|gb|ACP30855.1| dCMP deaminase [Enterobacteria phage RB14]
 gi|227438819|gb|ACP31131.1| dCMP deaminase [Enterobacteria phage RB51]
 gi|291290435|dbj|BAI83230.1| dCMP deaminase [Enterobacteria phage AR1]
          Length = 193

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 9/53 (16%)

Query: 54  HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           HAE+ A+      G    GAT YVTL PC      P CA+ I + GI+++V C
Sbjct: 104 HAELNAILFAARNGSSIEGATMYVTLSPC------PDCAKAIAQSGIKKLVYC 150


>gi|9632715|ref|NP_049828.1| Cd dCMP deaminase [Enterobacteria phage T4]
 gi|118398|sp|P16006|DCTD_BPT4 RecName: Full=Deoxycytidylate deaminase; AltName: Full=dCMP
           deaminase; Short=dCD
 gi|5354339|gb|AAD42546.1|AF158101_133 Cd dCMP deaminase [Enterobacteria phage T4]
 gi|215838|gb|AAA32489.1| deoxycytidylate deaminase (EC 3.5.4.12) [Enterobacteria phage T4]
 gi|299780576|gb|ADJ39938.1| deoxycytidylate deaminase [Enterobacteria phage T4T]
          Length = 193

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 9/53 (16%)

Query: 54  HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           HAE+ A+      G    GAT YVTL PC      P CA+ I + GI+++V C
Sbjct: 104 HAELNAILFAARNGSSIEGATMYVTLSPC------PDCAKAIAQSGIKKLVYC 150


>gi|228963119|ref|ZP_04124290.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228796575|gb|EEM44012.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 195

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 68/170 (40%), Gaps = 20/170 (11%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  +IV DG VI        T      HAE+ A++EA ++        AT YVTLEPC  
Sbjct: 28  IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDEACKKLGTWRLEDATLYVTLEPC-- 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P CA  I+   ++RVV    DP    +G  +  L+ +       +V  ++E E   
Sbjct: 86  ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVTGVLEEECGT 141

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
            L  +     +KR  I         N+       S     F   N++ +L
Sbjct: 142 LLTNFFRELRKKRKAIKNWRKAMGTNVFAFYKETSYTDNAFNEGNRILVL 191


>gi|254463267|ref|ZP_05076683.1| cytosine deaminase [Rhodobacterales bacterium HTCC2083]
 gi|206679856|gb|EDZ44343.1| cytosine deaminase [Rhodobacteraceae bacterium HTCC2083]
          Length = 157

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 49/107 (45%), Gaps = 17/107 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGC---PHAEVQALEEA-- 63
           FM AAL  +R  +   +    V  ++VKDG +IGRG  A   GC    HAE+ A+ EA  
Sbjct: 14  FMEAALVEAR--LAEAAGEVPVGAVVVKDGAIIGRGRNATRTGCDPSAHAEILAIREACA 71

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
               +       YVTLEPC+       CA  I    + R+     DP
Sbjct: 72  VLGQDRLVDCDLYVTLEPCAM------CAGAIAHARVARLYYGASDP 112


>gi|313205464|ref|YP_004044121.1| cmp/dcmp deaminase zinc-binding protein [Paludibacter
           propionicigenes WB4]
 gi|312444780|gb|ADQ81136.1| CMP/dCMP deaminase zinc-binding protein [Paludibacter
           propionicigenes WB4]
          Length = 141

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 48/119 (40%), Gaps = 36/119 (30%)

Query: 6   FDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            D R+M    R +R W          V  L+VK+ ++I  G   Y G P           
Sbjct: 8   LDNRYM----RMARIWAENSYCERRKVGALLVKNQMIISDG---YNGTPSGFENKCEDEN 60

Query: 54  --------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                   HAE  A+ +   +   +  AT YVT  PC        CA+ II+ GI+RVV
Sbjct: 61  NVSKPYVLHAEANAISKIARSHNSSDNATLYVTASPCIE------CAKLIIQAGIKRVV 113


>gi|329117262|ref|ZP_08245979.1| cytidine and deoxycytidylate deaminase zinc-binding region
          [Streptococcus parauberis NCFD 2020]
 gi|326907667|gb|EGE54581.1| cytidine and deoxycytidylate deaminase zinc-binding region
          [Streptococcus parauberis NCFD 2020]
          Length = 169

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
          FM  ALR +     L      + C+IVKDG +IGRG  A         HAE+ A+ +A  
Sbjct: 11 FMREALREA--EKSLAKEEIPIGCVIVKDGQIIGRGHNAREELNQAIMHAEMMAISQANA 68

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 69 HEGNWRLLETTMFVTIEPC 87


>gi|296271673|ref|YP_003654304.1| CMP/dCMP deaminase zinc-binding protein [Arcobacter nitrofigilis
           DSM 7299]
 gi|296095848|gb|ADG91798.1| CMP/dCMP deaminase zinc-binding protein [Arcobacter nitrofigilis
           DSM 7299]
          Length = 144

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 39/101 (38%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP---------------------------HAEVQALEEA 63
           V  +IVKDG ++  G   Y G P                           HAE+ A+  A
Sbjct: 25  VGAVIVKDGRILSTG---YNGTPAGYVNCKEHWNDSYTKEHHDWSKTYEIHAEMNAIIWA 81

Query: 64  GEEA---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
             +     GAT YVTLEPCS       C++ +I  GI+R+V
Sbjct: 82  ARKGISIEGATIYVTLEPCS------ECSKNLIAAGIQRIV 116


>gi|296136215|ref|YP_003643457.1| CMP/dCMP deaminase zinc-binding protein [Thiomonas intermedia K12]
 gi|295796337|gb|ADG31127.1| CMP/dCMP deaminase zinc-binding protein [Thiomonas intermedia K12]
          Length = 187

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 66/155 (42%), Gaps = 33/155 (21%)

Query: 7   DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
           D  FM  AL  ++  W +G       V  +IVKDG VI  G    +  +    HAE+ AL
Sbjct: 12  DRAFMRLALDQAQNAWLLGEVP----VGAVIVKDGKVIATGYNRPIGDHDPTAHAEIVAL 67

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A            T YVTLEPC+       CA  ++     RVV    DP    +G  
Sbjct: 68  RQAAHLLGNYRLPECTLYVTLEPCAM------CAMALLHARFARVVFGARDPKTGAAGS- 120

Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
                    +VD  + +E ++  H  +T ++E+ +
Sbjct: 121 ---------VVD--LFAEPRLNHHCDITPEIEQEA 144


>gi|147676360|ref|YP_001210575.1| cytosine/adenosine deaminases [Pelotomaculum thermopropionicum SI]
 gi|146272457|dbj|BAF58206.1| cytosine/adenosine deaminases [Pelotomaculum thermopropionicum SI]
          Length = 156

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 17/123 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA 63
           A +M  AL  ++   GL      V  ++V+DG +IGRG     T      HAE+ A+ EA
Sbjct: 7   AGYMREALAEAKKAYGLGEV--PVGAVVVRDGEIIGRGHNLRETLKDSTAHAEILAMREA 64

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                     G   Y T+EPC+       CA  II+  +  +V    DP    +G  +  
Sbjct: 65  ARIVGDWRLNGTVLYSTIEPCAM------CAGAIIQFRVATLVYGAADPKAGAAGSVIDV 118

Query: 119 LSQ 121
           + Q
Sbjct: 119 IGQ 121


>gi|94310515|ref|YP_583725.1| tRNA-adenosine deaminase [Cupriavidus metallidurans CH34]
 gi|93354367|gb|ABF08456.1| tRNA-specific adenosine deaminase [Cupriavidus metallidurans CH34]
          Length = 189

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 17/124 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  +M+AAL  +R  +   +    V  ++V D  +I RG    + +     HAE+QAL  
Sbjct: 14  DRFYMAAALDEAR--LAEAAGEVPVGAVVVWDDKIIARGHNLPIRSVDPSAHAEMQALRA 71

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +            YVTLEPC      P C+  I+   +R VV    DP    +G  + 
Sbjct: 72  AAKVLGNYRMPECEIYVTLEPC------PMCSGAILHARLRHVVFGATDPKTGAAGSVVD 125

Query: 118 WLSQ 121
             +Q
Sbjct: 126 LFAQ 129


>gi|294635160|ref|ZP_06713669.1| tRNA-specific adenosine deaminase [Edwardsiella tarda ATCC 23685]
 gi|291091465|gb|EFE24026.1| tRNA-specific adenosine deaminase [Edwardsiella tarda ATCC 23685]
          Length = 182

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V D  VIG G    +T +    HAE+ AL++ G   +      AT YVTLEPC  
Sbjct: 38  VGAVLVLDDQVIGEGWNRPITRHDPTAHAEIMALQQGGAVLQNYRLLEATLYVTLEPCVM 97

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  ++   IRR+V    D     +G  L  L   G+
Sbjct: 98  ------CAGAMVHSRIRRLVYGASDLKTGAAGSLLDVLGHPGM 134


>gi|156564196|ref|YP_001429706.1| deoxycytidylate deaminase [Bacillus phage 0305phi8-36]
 gi|154622893|gb|ABS83773.1| deoxycytidylate deaminase [Bacillus phage 0305phi8-36]
          Length = 255

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 54/130 (41%), Gaps = 41/130 (31%)

Query: 6   FDARFMSAALRFSRWHVGL--TSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53
           +D  F+  AL     HV    T +   V C++VK+  VI    T Y G P          
Sbjct: 116 WDQYFIEQAL-----HVAERGTCSRARVGCVLVKENRVIA---TGYNGSPKGMPHCDDIG 167

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE  AL +    G  + GATAYVT EPC +      C + + + GI+
Sbjct: 168 HLMKDGHCVRTNHAEENALLQCARLGISSEGATAYVTHEPCLY------CTRQLNQAGIK 221

Query: 99  RVVVCVDDPD 108
           R+V     P+
Sbjct: 222 RIVYVKPYPN 231


>gi|224475714|ref|YP_002633320.1| putative deaminase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222420321|emb|CAL27135.1| putative deaminase [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 159

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 20/133 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  ++VK+G VI R      T      HAE  A+E+A E          T YVTLEPC  
Sbjct: 26  IGAIVVKEGEVIARAHNLRETVQQPTAHAEHIAIEKAAEAVGSWRLEDCTLYVTLEPCVM 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGKI 136
                 C+  I+   I RVV    DP    SG  +  L +     +  +V  ++E+E   
Sbjct: 86  ------CSGAIVMSRIPRVVYGASDPKGGCSGSLMDLLQEPRFNHRAEVVSGVLENECGA 139

Query: 137 FLHAYLTRQVEKR 149
            L ++  +  EK+
Sbjct: 140 ILKSFFKQLREKK 152


>gi|167742541|ref|ZP_02415315.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
          14]
 gi|167821693|ref|ZP_02453373.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
          91]
          Length = 60

 Score = 40.0 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 27/56 (48%)

Query: 4  SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
          S  D   M+ ALR +   +  T  NP V C+I +    +G G     G PHAEV A
Sbjct: 5  SDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHA 60


>gi|118618636|ref|YP_906968.1| hypothetical protein MUL_3305 [Mycobacterium ulcerans Agy99]
 gi|118570746|gb|ABL05497.1| bifunctional enzyme riboflavin biosynthesis protein RibD
           [Mycobacterium ulcerans Agy99]
          Length = 260

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 20/173 (11%)

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILD-PHFKLSLDSKIIKTALLA 243
           LLR  +D ILVG GTV  +      R    ++    R   + P   ++ +S  +   L  
Sbjct: 75  LLRELADVILVGAGTVRIEGYSGAQRGVAERQQRQARGQSEVPQLAIATNSGQLDRDL-- 132

Query: 244 PVIIVTENDDPVLALA-----FRKKNIN---IIYCDCRDLKK-----LLTILVGRGVTSL 290
           PV   TE    VL  A      R++      ++ C  +D  +     LL  L GRG+  +
Sbjct: 133 PVFTRTEVPPLVLTAAAAVYDTRRRLTGLAEVVGCSGKDPHRVDEGLLLARLAGRGMRCI 192

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE--GYLEKNFMCV 341
           L EGG  +  S I   L+D + L  + +V+  GG+P  +    G L+    C 
Sbjct: 193 LTEGGPTLFGSLIEQDLLDELCLTIAPVVV--GGLPRRIASGPGQLQTRMHCA 243


>gi|283131371|dbj|BAI63375.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae
          subsp. equisimilis]
 gi|283131431|dbj|BAI63432.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae
          subsp. equisimilis]
          Length = 183

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 12/89 (13%)

Query: 1  MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
          MP S      FM  AL+ +     L      + C+IVKDG +IGRG  A         HA
Sbjct: 9  MPYSLEEQTYFMQEALKEA--EKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHA 66

Query: 56 EVQALEEAGEEARG-----ATAYVTLEPC 79
          E+ A+ EA            T +VT+EPC
Sbjct: 67 EMMAINEANAYEGNWRLLDTTMFVTIEPC 95


>gi|220919666|ref|YP_002494969.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Methylobacterium nodulans ORS 2060]
 gi|219952086|gb|ACL62477.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Methylobacterium nodulans ORS 2060]
          Length = 240

 Score = 40.0 bits (92), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 57/112 (50%), Gaps = 7/112 (6%)

Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKK 277
           + + +DPH ++      +    +  V +++E          R+  ++ ++   D  DL++
Sbjct: 88  LAVAIDPHGRVHYGQDHVLGDHV--VAVLSEAVSDAYLAELREDGVSYLFAGPDGTDLRR 145

Query: 278 LLTILVGR--GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
            +  L G+  GV ++L++GGA++  +F+  RL+D I L     + G  G+PS
Sbjct: 146 AMDAL-GQTFGVETILLQGGASINGAFLKQRLIDEISLLIQPAIDGLAGVPS 196


>gi|217972561|ref|YP_002357312.1| zinc-binding CMP/dCMP deaminase [Shewanella baltica OS223]
 gi|217497696|gb|ACK45889.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica OS223]
          Length = 175

 Score = 40.0 bits (92), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++VKDG  I  G    ++ +    HAE+  L EAG   E  R   AT YVTLEPC+ 
Sbjct: 35  VGAVLVKDGQQIATGYNLSISQHDPSAHAEILCLREAGRLVENYRLLDATLYVTLEPCA- 93

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 CA  ++   I RVV    D     +G
Sbjct: 94  -----MCAGAMVHSRIARVVFGARDEKTGAAG 120


>gi|304410027|ref|ZP_07391646.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica OS183]
 gi|307302260|ref|ZP_07582018.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica BA175]
 gi|304351436|gb|EFM15835.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica OS183]
 gi|306914298|gb|EFN44719.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica BA175]
          Length = 175

 Score = 40.0 bits (92), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++VKDG  I  G    ++ +    HAE+  L EAG   E  R   AT YVTLEPC+ 
Sbjct: 35  VGAVLVKDGQQIATGYNLSISQHDPSAHAEILCLREAGRLVENYRLLDATLYVTLEPCA- 93

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 CA  ++   I RVV    D     +G
Sbjct: 94  -----MCAGAMVHSRIARVVFGARDEKTGAAG 120


>gi|152981408|ref|YP_001353698.1| hypothetical protein mma_2008 [Janthinobacterium sp. Marseille]
 gi|151281485|gb|ABR89895.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 159

 Score = 40.0 bits (92), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 51/127 (40%), Gaps = 21/127 (16%)

Query: 7   DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
           DA FM  AL  +R  W +G       V  ++VKDG VI  G    +  +    HAE+ AL
Sbjct: 3   DAIFMRQALDQARNAWTLGEVP----VGAVVVKDGEVIATGFNQPIGTHDPTAHAEIMAL 58

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A          G   +VTLEPC        C+  ++   + RVV    DP     G  
Sbjct: 59  RAAASILGNYRLPGCELFVTLEPCVM------CSGAMMHARLARVVFGAPDPKTGACGSV 112

Query: 116 LQWLSQK 122
           +    Q 
Sbjct: 113 VNLFEQN 119


>gi|255712643|ref|XP_002552604.1| KLTH0C08756p [Lachancea thermotolerans]
 gi|238933983|emb|CAR22166.1| KLTH0C08756p [Lachancea thermotolerans]
          Length = 610

 Score = 40.0 bits (92), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 11/115 (9%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEAGEEA 67
           ++M  A+  ++   G T+T  SV  ++     V+  G +    G  HAE  ALE+  E++
Sbjct: 459 KYMEMAINEAK-KCGPTTTAFSVGAVLTNSDKVLSTGFSRELPGNTHAEQCALEKYFEQS 517

Query: 68  ------RGATAYVTLEPCS-HYGRSPPCAQFIIEC--GIRRVVVCVDDPDVRVSG 113
                  G+  Y T+EPCS     + PC   II+    IR V V V +PD  V  
Sbjct: 518 GNRSVPPGSVLYTTMEPCSFRLSGNKPCVDRIIDASKSIRTVFVGVMEPDTFVKN 572


>gi|167748009|ref|ZP_02420136.1| hypothetical protein ANACAC_02746 [Anaerostipes caccae DSM 14662]
 gi|167652586|gb|EDR96715.1| hypothetical protein ANACAC_02746 [Anaerostipes caccae DSM 14662]
          Length = 152

 Score = 40.0 bits (92), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 15/101 (14%)

Query: 31  VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           + C+IV DG +I R             HAE+ A+E+A ++         T Y+TLEPC  
Sbjct: 26  IGCVIVLDGKIIARAYNQRNKRKTTLAHAELLAIEKASKKTGDWRLEECTMYITLEPCQM 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                 CA  I++  I +VV+   +P    +G  L  L ++
Sbjct: 86  ------CAGAIVQARIPKVVIGAMNPKAGCAGSILNILQRE 120


>gi|154482616|ref|ZP_02025064.1| hypothetical protein EUBVEN_00283 [Eubacterium ventriosum ATCC
           27560]
 gi|149736516|gb|EDM52402.1| hypothetical protein EUBVEN_00283 [Eubacterium ventriosum ATCC
           27560]
          Length = 163

 Score = 40.0 bits (92), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 52/131 (39%), Gaps = 44/131 (33%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53
           S+D  FM  A         L S +P+    AC++  D  ++  G   Y G P        
Sbjct: 11  SWDEYFMGVASL-----AALRSKDPNTQVGACIVSDDNKILSMG---YNGLPVGCSDDEF 62

Query: 54  ------------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                             H+E+ A L   G    GA  YVTL PC+       CA+ II+
Sbjct: 63  PWNRESDDPYDNKYFYTTHSELNAILNYRGGSLEGAKIYVTLFPCNE------CAKAIIQ 116

Query: 95  CGIRRVVVCVD 105
           CGI++V+   D
Sbjct: 117 CGIKKVIYGDD 127


>gi|146341264|ref|YP_001206312.1| putative cytidine/deoxycytidylate deaminase [Bradyrhizobium sp.
          ORS278]
 gi|146194070|emb|CAL78088.1| putative cytidine/deoxycytidylate deaminase [Bradyrhizobium sp.
          ORS278]
          Length = 165

 Score = 40.0 bits (92), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 10/88 (11%)

Query: 1  MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTA--YGGCPHAE 56
          MP    D  FM  A++ +       + +P + C+IV   D +   R   A  +    HAE
Sbjct: 1  MPNLKTDEHFMQEAIKIATQDGADPALSP-IGCVIVLGSDIVAAERNHVAAKHDATAHAE 59

Query: 57 VQALEEAGE-----EARGATAYVTLEPC 79
          ++A+  AG      E RGAT Y TL+PC
Sbjct: 60 IEAIRAAGRGFDDGELRGATLYTTLQPC 87


>gi|323128130|gb|ADX25427.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae
          subsp. equisimilis ATCC 12394]
          Length = 175

 Score = 40.0 bits (92), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 12/89 (13%)

Query: 1  MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
          MP S      FM  AL+ +     L      + C+IVKDG +IGRG  A         HA
Sbjct: 1  MPYSLEEQTYFMQEALKEA--EKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHA 58

Query: 56 EVQALEEAGEEARG-----ATAYVTLEPC 79
          E+ A+ EA            T +VT+EPC
Sbjct: 59 EMMAINEANAYEGNWRLLDTTMFVTIEPC 87


>gi|238796745|ref|ZP_04640251.1| tRNA-specific adenosine deaminase [Yersinia mollaretii ATCC 43969]
 gi|238719476|gb|EEQ11286.1| tRNA-specific adenosine deaminase [Yersinia mollaretii ATCC 43969]
          Length = 181

 Score = 40.0 bits (92), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V D  VIG G    +       HAE+ AL + G+  +      AT YVTLEPC  
Sbjct: 41  VGAVLVLDNQVIGEGWNRSIRDNDPTAHAEIMALRQGGQAVQNYRLLEATLYVTLEPC-- 98

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  ++   IRR+V   +D     +G  +  L   G+
Sbjct: 99  ----VMCAGAMVHSRIRRLVYGANDLKTGAAGSLVDILRHPGM 137


>gi|160876246|ref|YP_001555562.1| zinc-binding CMP/dCMP deaminase [Shewanella baltica OS195]
 gi|160861768|gb|ABX50302.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica OS195]
 gi|315268435|gb|ADT95288.1| CMP/dCMP deaminase zinc-binding protein [Shewanella baltica OS678]
          Length = 175

 Score = 40.0 bits (92), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++VKDG  I  G    ++ +    HAE+  L EAG   E  R   AT YVTLEPC+ 
Sbjct: 35  VGAVLVKDGQQIATGYNLSISQHDPSAHAEILCLREAGRLVENYRLLDATLYVTLEPCAM 94

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 CA  ++   I RVV    D     +G
Sbjct: 95  ------CAGAMVHSRIARVVFGARDEKTGAAG 120


>gi|261208197|ref|ZP_05922870.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium TC 6]
 gi|289566587|ref|ZP_06447008.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium D344SRF]
 gi|294615830|ref|ZP_06695673.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1636]
 gi|260077454|gb|EEW65172.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium TC 6]
 gi|289161632|gb|EFD09511.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium D344SRF]
 gi|291591320|gb|EFF22986.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1636]
          Length = 171

 Score = 40.0 bits (92), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  ++V DG V+GRG     T      HAE+ A++EA E+        AT +VTLEPC  
Sbjct: 33  IGAVVVLDGKVVGRGYNLRETTQDATTHAEMLAIKEACEKVGSWRLEDATLFVTLEPC-- 90

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
               P C+  +I   +  V     DP    +G
Sbjct: 91  ----PMCSGAMILSRVAEVYFGAYDPKGGTAG 118


>gi|156372900|ref|XP_001629273.1| predicted protein [Nematostella vectensis]
 gi|156216269|gb|EDO37210.1| predicted protein [Nematostella vectensis]
          Length = 208

 Score = 40.0 bits (92), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 61/147 (41%), Gaps = 48/147 (32%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53
           S+D  FMS A   ++      S +PS    AC++ K+  ++G G   Y G P        
Sbjct: 48  SWDDYFMSVAFLSAQ-----RSKDPSSQVGACIVNKERKIVGIG---YNGMPNGCSDDEL 99

Query: 54  ------------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                             HAE+ A L +   + +G T YV L PC+       C++ II+
Sbjct: 100 PWNRHADDELDTKYPYVCHAEMNAILNKNSADVKGCTVYVALFPCNE------CSKIIIQ 153

Query: 95  CGIRRVVVCV----DDPDVRVSGRGLQ 117
            G++ VV       D P ++ S R L 
Sbjct: 154 AGLKEVVFVSDKYHDKPSMKASRRLLD 180


>gi|75676735|ref|YP_319156.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Nitrobacter winogradskyi Nb-255]
 gi|74421605|gb|ABA05804.1| tRNA-adenosine deaminase [Nitrobacter winogradskyi Nb-255]
          Length = 148

 Score = 40.0 bits (92), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 15/99 (15%)

Query: 31  VACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEAG-----EEARGATAYVTLEPCSH 81
           + C+IV+DG +I     R +T      HAEV AL  A      E   G   YVTLEPC+ 
Sbjct: 25  IGCVIVRDGEIIAAAGNRTLTDRDPTAHAEVLALRAAAHVLGSERLTGCDLYVTLEPCTM 84

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                 CA  I    IRR+     DP       G+++ +
Sbjct: 85  ------CAAAISFARIRRLYYGASDPKGGAVEYGVRFFA 117


>gi|317473697|ref|ZP_07932984.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Anaerostipes sp. 3_2_56FAA]
 gi|316898818|gb|EFV20845.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Anaerostipes sp. 3_2_56FAA]
          Length = 152

 Score = 40.0 bits (92), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 15/101 (14%)

Query: 31  VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           + C+IV DG +I R             HAE+ A+E+A ++         T Y+TLEPC  
Sbjct: 26  IGCVIVLDGKIIARAYNQRNKRKTTLAHAELLAIEKASKKTGDWRLEECTMYITLEPCQM 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                 CA  I++  I +VV+   +P    +G  L  L ++
Sbjct: 86  ------CAGAIVQARIPKVVIGAMNPKAGCAGSILNILQRE 120


>gi|317049171|ref|YP_004116819.1| CMP/dCMP deaminase zinc-binding protein [Pantoea sp. At-9b]
 gi|316950788|gb|ADU70263.1| CMP/dCMP deaminase zinc-binding protein [Pantoea sp. At-9b]
          Length = 165

 Score = 40.0 bits (92), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 54/129 (41%), Gaps = 21/129 (16%)

Query: 7   DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
           D  +M  ALR +R  W  G       V  ++V+   VIG G    +  +    HAE+ AL
Sbjct: 6   DEYWMRHALRLARLAWEQG----EVPVGAVLVQGDTVIGEGWNRPIGQHDPTAHAEIMAL 61

Query: 61  EEAG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            + G   E  R    T YVTLEPC        CA  ++   I R+V    D     +G  
Sbjct: 62  RQGGKVLENYRLLDTTLYVTLEPCVM------CAGAMVHSRITRLVYGAKDEKTGAAGSL 115

Query: 116 LQWLSQKGI 124
           L  +   G+
Sbjct: 116 LDVIGHPGM 124


>gi|119476440|ref|ZP_01616791.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [marine
           gamma proteobacterium HTCC2143]
 gi|119450304|gb|EAW31539.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [marine
           gamma proteobacterium HTCC2143]
          Length = 159

 Score = 40.0 bits (92), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 35/150 (23%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  +M AA++ ++   G     P  A +++ D  VIG G    ++      HAE+ A+++
Sbjct: 6   DHHYMEAAIKLAQ-KAGALGEVPVGAVVVLNDK-VIGEGFNQPISLSDPTAHAEMVAIKD 63

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +  +      AT YVT+EPC+       CA  ++   ++RVV    +           
Sbjct: 64  AAKALQNYRLPEATLYVTIEPCTM------CAGAMVHARVKRVVYGATE----------- 106

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVE 147
             S+ G+      ES G +F + YL  +VE
Sbjct: 107 --SKSGV-----AESNGCLFDNTYLNHKVE 129


>gi|255283094|ref|ZP_05347649.1| putative deoxycytidylate deaminase [Bryantella formatexigens DSM
           14469]
 gi|255266396|gb|EET59601.1| putative deoxycytidylate deaminase [Bryantella formatexigens DSM
           14469]
          Length = 160

 Score = 40.0 bits (92), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 37/127 (29%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYG-GCP------- 53
           S+D  FM  A+       G+ S +P+    AC++  D  ++  G   +  GC        
Sbjct: 9   SWDEYFMGVAML-----SGMRSKDPNTQVGACIVSSDNKILSMGYNGFPIGCSDDDFPWE 63

Query: 54  --------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                         H+E+ A L   G    GAT YV+L PC+       CA+ II+ GI+
Sbjct: 64  REGEALDTKYLYTTHSELNAILNYRGGSLDGATLYVSLFPCNE------CAKAIIQAGIK 117

Query: 99  RVVVCVD 105
           ++V   D
Sbjct: 118 QIVYDCD 124


>gi|209886356|ref|YP_002290213.1| tRNA-specific adenosine deaminase [Oligotropha carboxidovorans OM5]
 gi|209874552|gb|ACI94348.1| tRNA-specific adenosine deaminase [Oligotropha carboxidovorans OM5]
          Length = 181

 Score = 40.0 bits (92), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 52/121 (42%), Gaps = 17/121 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEAG- 64
           FM  ALR  +      +    + C++V++G VI     R +T      HAE+ AL EA  
Sbjct: 39  FMDLALR--QAQNAEANGEVPIGCVVVQNGTVIAAAGNRTITDRDPTAHAEMLALREAAS 96

Query: 65  ----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
               E       YVTLEPC+       CA  I    IRR+     DP       G+++ +
Sbjct: 97  KLGRERLADCDLYVTLEPCTM------CAGAISHARIRRLYYGALDPKGGAIDSGVRFFA 150

Query: 121 Q 121
           Q
Sbjct: 151 Q 151


>gi|93006499|ref|YP_580936.1| CMP/dCMP deaminase, zinc-binding [Psychrobacter cryohalolentis K5]
 gi|92394177|gb|ABE75452.1| tRNA-adenosine deaminase [Psychrobacter cryohalolentis K5]
          Length = 197

 Score = 40.0 bits (92), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 24/166 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGC---PHAEVQALEE 62
           D ++M+ AL+ ++   G       V  ++V +  +IG+G     G C    HAE+ AL +
Sbjct: 40  DIKWMTEALKLAK--QGAEKEEVPVGAVLVHNQQIIGQGFNEPIGRCDATAHAEIVALRD 97

Query: 63  AGEEARG------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           A             T YVTLEPC+       C   +I   + R+V    +P   V G  +
Sbjct: 98  ACTRLNNYRLPLKTTLYVTLEPCTM------CMGAMIHARVDRLVYAAHEPRAGVLGSQM 151

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAY-----LTRQVEKRSHITLKIA 157
             L+++     RM    G    H+        RQ  K + +  KI+
Sbjct: 152 N-LAEQPFYNHRMQVDAGLCREHSSQMLKDFFRQRRKVAKVNRKIS 196


>gi|227513704|ref|ZP_03943753.1| possible guanine deaminase [Lactobacillus buchneri ATCC 11577]
 gi|227522506|ref|ZP_03952555.1| possible guanine deaminase [Lactobacillus hilgardii ATCC 8290]
 gi|227083023|gb|EEI18335.1| possible guanine deaminase [Lactobacillus buchneri ATCC 11577]
 gi|227090328|gb|EEI25640.1| possible guanine deaminase [Lactobacillus hilgardii ATCC 8290]
          Length = 157

 Score = 40.0 bits (92), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 46/110 (41%), Gaps = 17/110 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           D RFM  AL        L    P +  +I +DG +IGRG         G  HAE+ A+EE
Sbjct: 6   DERFMKMAL-IEAQKAYLIGEVP-IGAVITQDGQIIGRGHNLREHLNDGVAHAEIMAIEE 63

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           A    R         YVT+EPC        C+  I+   I RVV    D 
Sbjct: 64  ACRYLRSWRLVDCELYVTIEPC------LMCSGAIVNSRIDRVVFGARDK 107


>gi|157961143|ref|YP_001501177.1| zinc-binding CMP/dCMP deaminase [Shewanella pealeana ATCC 700345]
 gi|157846143|gb|ABV86642.1| CMP/dCMP deaminase zinc-binding [Shewanella pealeana ATCC 700345]
          Length = 163

 Score = 40.0 bits (92), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++VKDG V+  G     G      HAE+Q L +AG+  +       T YVTLEPC+ 
Sbjct: 19  VGAVLVKDGEVVSAGFNFSIGLHDPSAHAEMQCLRQAGQIMQNYRLLDTTLYVTLEPCAM 78

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 CA  I+   I R+V    D     +G
Sbjct: 79  ------CAGAIVHSRINRLVFGARDEKTGAAG 104


>gi|326336121|ref|ZP_08202293.1| cytidine/deoxycytidylate deaminase [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325691630|gb|EGD33597.1| cytidine/deoxycytidylate deaminase [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 150

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 36/139 (25%)

Query: 9   RFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53
           R+  A +R ++ W     S    V  +IVKD ++I  G   Y G P              
Sbjct: 6   RYDRAYMRMAQEWAKLSYSQRKQVGAIIVKDRMIISDG---YNGTPTGFDNCCEDEQGQT 62

Query: 54  -----HAEVQALEEAGEEAR---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE  A+ +     +   GAT Y+T+ PC        C++ I + GI RVV    
Sbjct: 63  LWYVLHAEANAILKVAASTQSCAGATLYITMSPC------KECSKLIHQAGIIRVVY--- 113

Query: 106 DPDVRVSGRGLQWLSQKGI 124
             +      GL +L++ G+
Sbjct: 114 -KEAYKDTSGLDFLAKAGV 131


>gi|295094398|emb|CBK83489.1| Cytosine/adenosine deaminases [Coprococcus sp. ART55/1]
          Length = 169

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 15/101 (14%)

Query: 31  VACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           + C+IV D  +I RG            HAE+ A+E+A ++         T YVTLEPC  
Sbjct: 39  IGCVIVHDDRIIARGFNKRNLKKTTLAHAEILAIEQASKKLGDWRLEECTMYVTLEPCQM 98

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                 CA  I++  I  VV+   +P    +G  +  L  K
Sbjct: 99  ------CAGAIVQARIPNVVIGCMNPKAGCAGSIINLLDMK 133


>gi|52841949|ref|YP_095748.1| deaminase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52629060|gb|AAU27801.1| deaminase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 141

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 18/117 (15%)

Query: 29  PSVACLIVKDGIV--IGRGVTAYGGCP--HAEVQALEEAGEEARG-----ATAYVTLEPC 79
           P  A L+ KD  +  +GR V      P  HAE++A+ +A  +         T YVTLEPC
Sbjct: 18  PVGAVLVSKDNQLLGVGRNVIEKSHDPSDHAEIRAIRQASRKLNNHRLLDTTLYVTLEPC 77

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG---RGLQWLSQKGIIVDRMMESE 133
                   CA  ++   I+R+V    D     +G     L  L+   +I + +M++E
Sbjct: 78  ------VMCAGLMVHARIKRLVFATRDFKTGAAGSMFNVLHALNHSVLIDEGIMQAE 128


>gi|312195561|ref|YP_004015622.1| CMP/dCMP deaminase zinc-binding protein [Frankia sp. EuI1c]
 gi|311226897|gb|ADP79752.1| CMP/dCMP deaminase zinc-binding protein [Frankia sp. EuI1c]
          Length = 161

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 69  GATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           GAT Y +LEPCS     P  C +  +  GI RVV    +P + V  +G + L+  G+ V
Sbjct: 83  GATLYSSLEPCSARASRPRTCTELTLAAGIGRVVFAWREPALFVDCQGAELLAAAGVTV 141


>gi|220930799|ref|YP_002507708.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulolyticum H10]
 gi|220001127|gb|ACL77728.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulolyticum H10]
          Length = 152

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 17/116 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
           + +FM AA++ ++      +    V  +IVK+G +I  G            HAE++AL++
Sbjct: 5   NEQFMLAAIQQAK--EAYKNGESPVGAVIVKNGEIIAYGCNRREEKLDVTSHAEIEALKK 62

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A +E       G   YVTLEPC      P CA  II+  I+ + +   D     +G
Sbjct: 63  AAKEIGTWKLDGCDMYVTLEPC------PMCAGAIIQSRIKTLYIGAMDKKSGSAG 112


>gi|32455578|ref|NP_862061.1| putative reductase [Streptomyces lividans]
 gi|28883229|gb|AAO61162.1| putative reductase [Streptomyces lividans]
 gi|89357154|gb|ABD72320.1| pQC542.16 [Streptomyces lividans]
          Length = 226

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 78/202 (38%), Gaps = 49/202 (24%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           R ++ L  A S D  +       + ++     ++V  +RA+SDAIL+G  T+  D+P L 
Sbjct: 4   RPYVILSAATSVDGYLDDTSPDRLRLSNEADFDRVDQVRAESDAILIGATTMRRDNPRLL 63

Query: 209 C--------RLNGLQEHSPMRIILDPHFKLSLDSKI------------------IKTAL- 241
                    R+   +   P+++ +     LS D K                   ++T L 
Sbjct: 64  VNSEQRRAQRVAAGKPEYPLKVTVTASGDLSADLKFWHHGGQKLVLTVDGAAEKVRTTLD 123

Query: 242 -LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
            LA  + V    D VLAL                       L  RG+  L+VEGG  +  
Sbjct: 124 GLADTVSVGPEFDWVLALEE---------------------LGRRGIKRLMVEGGGTIHT 162

Query: 301 SFINSRLVDSIILYRSQIVIGE 322
             +   L D + L  + +++G+
Sbjct: 163 QLMAQNLADEVHLAIAPLLVGQ 184


>gi|242794450|ref|XP_002482376.1| cytosine deaminase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218718964|gb|EED18384.1| cytosine deaminase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 186

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 52/117 (44%), Gaps = 21/117 (17%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAG 64
           RFM  AL      + +  T   V C++V +G +IG G+     +  G  HAE  A+EEA 
Sbjct: 21  RFMKEALLMGEKALAVGET--PVGCVLVLNGKIIGSGMNDTNRSMNGTRHAEFLAIEEAL 78

Query: 65  EEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV-CVDDPDVRVSGRG 115
           +       R    YVT+EPC        CA  + +  I RV   C ++   R  G G
Sbjct: 79  QTYPRSIFREVDLYVTVEPCVM------CASLLRQYNICRVFFGCANE---RFGGTG 126


>gi|126175184|ref|YP_001051333.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica OS155]
 gi|125998389|gb|ABN62464.1| tRNA-adenosine deaminase [Shewanella baltica OS155]
          Length = 175

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++VKDG  I  G    ++ +    HAE+  L EAG   E  R   AT YVTLEPC+ 
Sbjct: 35  VGAVLVKDGQQIATGYNLSISQHDPSAHAEILCLREAGRLVENYRLLDATLYVTLEPCAM 94

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 CA  ++   I RVV    D     +G
Sbjct: 95  ------CAGAMVHSRIARVVFGARDEKTGAAG 120


>gi|153006601|ref|YP_001380926.1| CMP/dCMP deaminase [Anaeromyxobacter sp. Fw109-5]
 gi|152030174|gb|ABS27942.1| CMP/dCMP deaminase zinc-binding [Anaeromyxobacter sp. Fw109-5]
          Length = 150

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 15/86 (17%)

Query: 31  VACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           V  + V +G V+GRG  A    +    HAE+ A+++A          G T YVTLEPC+ 
Sbjct: 19  VGAVAVFEGRVVGRGANAREAAHDPTAHAELLAIQDAARALGRWRLTGVTVYVTLEPCAM 78

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDP 107
                 CA  ++   I R+V    DP
Sbjct: 79  ------CAGAMVLARIDRLVYAASDP 98


>gi|160936895|ref|ZP_02084259.1| hypothetical protein CLOBOL_01784 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440085|gb|EDP17832.1| hypothetical protein CLOBOL_01784 [Clostridium bolteae ATCC
           BAA-613]
          Length = 244

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 17/122 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  FM  ALR ++    +      + C+IV+   +I RG            HAE+ ++++
Sbjct: 95  DEGFMREALRQAQKAAAIGDV--PIGCVIVRGDKIIARGYNRRNADKSVLSHAEIISIKK 152

Query: 63  AGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++         T YVTLEPC      P CA  I++  I R+ V   +P    +G  L 
Sbjct: 153 ACKKIGDWRLEDCTMYVTLEPC------PMCAGAIVQARIPRIAVGCMNPKAGCAGSVLD 206

Query: 118 WL 119
            L
Sbjct: 207 ML 208


>gi|304558173|gb|ADM40837.1| tRNA-specific adenosine-34 deaminase [Edwardsiella tarda FL6-60]
          Length = 170

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 15/126 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIV---IGRGVTAYGGCPHAEVQALEEA 63
           D+ +M  AL+ +          P  A L++ D ++     R +T +    HAE+ AL++ 
Sbjct: 6   DSDWMRHALQLAE-KARAQGEVPVGAVLVLNDRVIGEGWNRPITRHDPTAHAEIMALQQG 64

Query: 64  GEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +      AT YVTLEPC        CA  ++   IRR+V    D     +G  L  
Sbjct: 65  GAIMQNYRLLEATLYVTLEPCVM------CAGAMVHSRIRRLVYGAPDLKTGAAGSLLDV 118

Query: 119 LSQKGI 124
           L   G+
Sbjct: 119 LGHPGM 124


>gi|83591205|ref|YP_431214.1| CMP/dCMP deaminase, zinc-binding [Moorella thermoacetica ATCC
           39073]
 gi|83574119|gb|ABC20671.1| CMP/dCMP deaminase, zinc-binding protein [Moorella thermoacetica
           ATCC 39073]
          Length = 135

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 56/144 (38%), Gaps = 41/144 (28%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPH--------- 54
             +D  F+  A + +      T    +V  ++VKD  + G   T Y G PH         
Sbjct: 3   KEWDEYFLDIAFQVAS---RSTCNRLAVGAVVVKDKRIKG---TGYNGAPHGLPHCLEVG 56

Query: 55  -------------AEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                        AE+ AL E   EE +GAT YVT  PC        CA  I++ GI+R+
Sbjct: 57  CLMEGEHCLRTIHAEINALLECSPEERQGATMYVTDYPCER------CALVIVQSGIKRL 110

Query: 101 VVCVDDPDVRVSGRGLQWLSQKGI 124
           V        R       WL + GI
Sbjct: 111 VY------ARPYHVNHDWLLEAGI 128


>gi|238784197|ref|ZP_04628210.1| tRNA-specific adenosine deaminase [Yersinia bercovieri ATCC 43970]
 gi|238714906|gb|EEQ06905.1| tRNA-specific adenosine deaminase [Yersinia bercovieri ATCC 43970]
          Length = 181

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V D  VIG G    +       HAE+ AL + G+  +      AT YVTLEPC  
Sbjct: 41  VGAVLVLDNQVIGEGWNRSICDSDPTAHAEIMALRQGGQVVQNYRLLDATLYVTLEPCVM 100

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  ++   IRR+V   +D     +G  L  L   G+
Sbjct: 101 ------CAGAMVHSRIRRLVYGANDLKTGAAGSLLDILRHPGM 137


>gi|268318039|ref|YP_003291758.1| CMP/dCMP deaminase zinc-binding protein [Rhodothermus marinus DSM
           4252]
 gi|262335573|gb|ACY49370.1| CMP/dCMP deaminase zinc-binding protein [Rhodothermus marinus DSM
           4252]
          Length = 158

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 46/102 (45%), Gaps = 17/102 (16%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA- 63
           R+M AALR +            V  ++VKD  ++GRG            HAE+ A+  A 
Sbjct: 12  RWMEAALREA--EQAFEEGEVPVGAVVVKDDRIVGRGHNCVEQLKDPTAHAEMLAITAAC 69

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                +  RG T YVTLEPC      P CA  I+   + RVV
Sbjct: 70  ATLDTKYLRGCTLYVTLEPC------PMCAGAIVWARLDRVV 105


>gi|42779100|ref|NP_976347.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing
           protein [Bacillus cereus ATCC 10987]
 gi|42735015|gb|AAS38955.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus ATCC 10987]
          Length = 166

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 17/119 (14%)

Query: 54  HAEVQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+ A++EA ++        AT YVTLEPC      P CA  I+   ++RVV    DP 
Sbjct: 55  HAELLAIDEACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPK 108

Query: 109 VRVSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
              +G  +  L+ +       +V  ++E E    L  +  R + K+     K+  S++N
Sbjct: 109 GGCAGTLMNLLTDERFNHQCEVVAGVLEEECGTLLTNFF-RALRKKRKAIKKLEKSKEN 166


>gi|21673220|ref|NP_661285.1| cytosine deaminase, putative [Chlorobium tepidum TLS]
 gi|21646303|gb|AAM71627.1| cytosine deaminase, putative [Chlorobium tepidum TLS]
          Length = 152

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 15/94 (15%)

Query: 29  PSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
           P  A ++  +G++IGRG     T      HAE+ AL  A      +   G T  VTLEPC
Sbjct: 25  PVGAVVLDPNGLIIGRGYNQVETLSDATAHAEMIALTSAMATIGSKYLEGCTLAVTLEPC 84

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 P CA  I+   I RVV    DP +  +G
Sbjct: 85  ------PMCAGAIVLSKISRVVFGAWDPKMGAAG 112


>gi|261188372|ref|XP_002620601.1| cytosine deaminase [Ajellomyces dermatitidis SLH14081]
 gi|239593201|gb|EEQ75782.1| cytosine deaminase [Ajellomyces dermatitidis SLH14081]
 gi|239609343|gb|EEQ86330.1| cytosine deaminase [Ajellomyces dermatitidis ER-3]
 gi|327354444|gb|EGE83301.1| cytosine deaminase [Ajellomyces dermatitidis ATCC 18188]
          Length = 143

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 18/106 (16%)

Query: 29  PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG----EEARGATAYVTLEPCS 80
           P  ACL+ +DG ++GRG    V       H E+ ALE +G        GAT Y T+ PC 
Sbjct: 25  PIGACLVARDGKILGRGHNMRVQKGSATLHGEIAALENSGRLPASTYVGATMYTTMSPCD 84

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
                  C    +   ++RVVV     +    G G Q+L  +G+ V
Sbjct: 85  M------CTGACVLYKLKRVVV---GENTTFMG-GEQYLINRGVEV 120


>gi|183982058|ref|YP_001850349.1| bifunctional enzyme riboflavin biosynthesis protein RibD
           [Mycobacterium marinum M]
 gi|183175384|gb|ACC40494.1| bifunctional enzyme riboflavin biosynthesis protein RibD
           [Mycobacterium marinum M]
          Length = 260

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 71/176 (40%), Gaps = 26/176 (14%)

Query: 185 LLRAQSDAILVGIGTVLADD--------PELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
           LLR  +D ILVG GTV  +          E   R    Q   P   I     +L  D  +
Sbjct: 75  LLRELADVILVGAGTVRIEGYSGAQLGVAERQQRQARGQSEVPQLAIATNSGQLDRDLPV 134

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNIN----IIYCDCRDLKK-----LLTILVGRGV 287
                + P+++         A+   ++ +     ++ C  +D  +     LL  L GRG+
Sbjct: 135 FTRTEVPPLVLTA-----AAAVYDTRRRLTGLAEVVDCSGKDPHRVDEGLLLARLAGRGM 189

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE--GYLEKNFMCV 341
             +L EGG  +  S I   L+D + L  + +V+  GG+P  +    G L+    C 
Sbjct: 190 RRILTEGGPTLFGSLIEQDLLDELCLTIAPVVV--GGLPRRIASGPGQLQTRMHCA 243


>gi|56418551|ref|YP_145869.1| hypothetical protein GK0016 [Geobacillus kaustophilus HTA426]
 gi|261417515|ref|YP_003251197.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. Y412MC61]
 gi|297528391|ref|YP_003669666.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. C56-T3]
 gi|319765173|ref|YP_004130674.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. Y412MC52]
 gi|56378393|dbj|BAD74301.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
 gi|261373972|gb|ACX76715.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. Y412MC61]
 gi|297251643|gb|ADI25089.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. C56-T3]
 gi|317110039|gb|ADU92531.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. Y412MC52]
          Length = 165

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 20/136 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  +IV+DG VI R      T      HAE+ A++EA           AT YVTLEPC+ 
Sbjct: 26  IGAVIVQDGRVIARAHNLRETEQRAIAHAEILAIDEACRATGSWRLERATLYVTLEPCAM 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
                 CA  I+   I RVV    DP    +G  +  L +        +V  ++  E   
Sbjct: 86  ------CAGAIVLSRIERVVFGAFDPKGGCAGTLMNLLQESRFNHQVKVVSGVLADECGS 139

Query: 137 FLHAYLTRQVEKRSHI 152
            L  +  R  E++ ++
Sbjct: 140 LLSQFFRRLREQKRNV 155


>gi|313901005|ref|ZP_07834493.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Clostridium sp. HGF2]
 gi|312953963|gb|EFR35643.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Clostridium sp. HGF2]
          Length = 164

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 6/61 (9%)

Query: 45  GVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
           G T Y    HAE+ A+  +  + +G + YV+L PC+       CA+ II+ GI R+V   
Sbjct: 68  GNTKYPYVVHAELNAILNSKHDLKGCSIYVSLFPCNE------CAKAIIQSGISRIVYES 121

Query: 105 D 105
           D
Sbjct: 122 D 122


>gi|313885505|ref|ZP_07819255.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619235|gb|EFR30674.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Eremococcus coleocola ACS-139-V-Col8]
          Length = 175

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 15/85 (17%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  ++V  G ++GRG     +      HAE+ A+E A ++        A+ YVTLEPC  
Sbjct: 37  IGAVLVYQGQIVGRGHNVRESQERALGHAELMAIETANQQLGHWRLEEASLYVTLEPC-- 94

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDD 106
               P CA  ++ C I+ V+    D
Sbjct: 95  ----PMCAGALMNCRIKEVIYGASD 115


>gi|332654745|ref|ZP_08420487.1| cytidine/deoxycytidylate deaminase family protein [Ruminococcaceae
           bacterium D16]
 gi|332516088|gb|EGJ45696.1| cytidine/deoxycytidylate deaminase family protein [Ruminococcaceae
           bacterium D16]
          Length = 152

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 39/79 (49%), Gaps = 15/79 (18%)

Query: 31  VACLIVKDGIVIGRGVT---AYG-GCPHAEVQALEEA-----GEEARGATAYVTLEPCSH 81
           V C+IVKDG ++G G      +G    HAE++A+ +A          G T YVTLEPC  
Sbjct: 25  VGCVIVKDGKIVGEGRNRREEHGDATAHAELEAIRDACARLGSWRLHGCTLYVTLEPC-- 82

Query: 82  YGRSPPCAQFIIECGIRRV 100
               P CA  II   I  V
Sbjct: 83  ----PMCAGGIINSRIETV 97


>gi|206889673|ref|YP_002249189.1| cytosine deaminase [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741611|gb|ACI20668.1| cytosine deaminase [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 154

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 17/116 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           M   ++D  FM  AL+ +            V  LIV +G +I +      T +    HAE
Sbjct: 1   MDQLAYDEYFMKEALKEA--EKAYEKGEIPVGALIVVNGEIISKAHNIKETTFDPTAHAE 58

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           + A+ EA           AT YVT EPC        C+  I+   I+R+V   +DP
Sbjct: 59  ILAIREAARILGAWRLTDATLYVTKEPCIM------CSGAIVNSRIKRLVYGCNDP 108


>gi|317120920|ref|YP_004100923.1| tRNA-adenosine deaminase [Thermaerobacter marianensis DSM 12885]
 gi|315590900|gb|ADU50196.1| tRNA-adenosine deaminase [Thermaerobacter marianensis DSM 12885]
          Length = 207

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 42/92 (45%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG--VTAYGGCP--HAEVQALEEA-----GEEARGATAYVTLEPCSH 81
           V  + V DG +I RG  +    G P  HAE+  L EA     G    G T YVTLEPC  
Sbjct: 67  VGAVAVHDGRIIARGHNLRERLGDPTAHAEILVLREAAARLGGWRLEGVTLYVTLEPC-- 124

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
               P CA  I+   + R+V    DP    +G
Sbjct: 125 ----PMCAGAIVLARVPRLVYGAPDPKAGAAG 152


>gi|307610417|emb|CBW99987.1| hypothetical protein LPW_17441 [Legionella pneumophila 130b]
          Length = 147

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 18/128 (14%)

Query: 29  PSVACLIVKDGIV--IGRGVTAYGGCP--HAEVQALEEAGEEARG-----ATAYVTLEPC 79
           P  A L+ KD  +  +GR V      P  HAE++A+ +A  +         T YVTLEPC
Sbjct: 24  PVGAVLVSKDNQLLGVGRNVIEKSHDPSDHAEIRAIRQASRKLNNHRLLDTTLYVTLEPC 83

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG---RGLQWLSQKGIIVDRMMESEGKI 136
                   CA  ++   I+R+V    D     +G     L  L+   +I + +M++E   
Sbjct: 84  ------VMCAGLMVHARIKRLVFATRDFKAGAAGSMFNVLHALNHSVLIDEGIMQAECSQ 137

Query: 137 FLHAYLTR 144
            L  +  +
Sbjct: 138 LLSDFFRK 145


>gi|148359260|ref|YP_001250467.1| deaminase [Legionella pneumophila str. Corby]
 gi|296107307|ref|YP_003619007.1| Cytosine/adenosine deaminase [Legionella pneumophila 2300/99 Alcoy]
 gi|148281033|gb|ABQ55121.1| deaminase [Legionella pneumophila str. Corby]
 gi|295649208|gb|ADG25055.1| Cytosine/adenosine deaminase [Legionella pneumophila 2300/99 Alcoy]
          Length = 147

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 18/117 (15%)

Query: 29  PSVACLIVKDGIV--IGRGVTAYGGCP--HAEVQALEEAGEEARG-----ATAYVTLEPC 79
           P  A L+ KD  +  +GR V      P  HAE++A+ +A  +         T YVTLEPC
Sbjct: 24  PVGAVLVSKDNQLLGVGRNVIEKSHDPSDHAEIRAIRQASRKLNNHRLLDTTLYVTLEPC 83

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG---RGLQWLSQKGIIVDRMMESE 133
                   CA  ++   I+R+V    D     +G     L  L+   +I + +M++E
Sbjct: 84  ------VMCAGLMVHARIKRLVFATRDFKAGAAGSMFNVLHALNHSVLIDEGIMQAE 134


>gi|293390603|ref|ZP_06634937.1| tRNA-specific adenosine deaminase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951137|gb|EFE01256.1| tRNA-specific adenosine deaminase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 175

 Score = 39.7 bits (91), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 16/112 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59
           +  D +FM  AL  +     L    P  A L+ + G +IG G    +       HAE+ A
Sbjct: 6   THLDEKFMRHALMLAGKAEALGEI-PVGAVLVSEAGEIIGEGWNLSIIHSDPTAHAEIVA 64

Query: 60  LEEAGEEARGA-----TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           L + G++ +       T YVTLEPC+       CA  I+   I+R+V    D
Sbjct: 65  LRQGGQKLQNYRLLNITLYVTLEPCT------MCAGAILHSRIKRLVFGAAD 110


>gi|328950667|ref|YP_004368002.1| tRNA(Ile)-lysidine synthase [Marinithermus hydrothermalis DSM
           14884]
 gi|328450991|gb|AEB11892.1| tRNA(Ile)-lysidine synthase [Marinithermus hydrothermalis DSM
           14884]
          Length = 528

 Score = 39.7 bits (91), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 15/85 (17%)

Query: 31  VACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA----GEEA-RGATAYVTLEPCSH 81
           +  ++V+DG V+     A         HAE+ AL  A    GE+   GAT YVTLEPC  
Sbjct: 406 IGAVLVRDGAVLAEAANAVEASRDATAHAELLALRTALRRVGEKVLPGATLYVTLEPC-- 463

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDD 106
               P C   I+E  + RVV  V++
Sbjct: 464 ----PMCYGAILEARVARVVYGVEN 484


>gi|327313504|ref|YP_004328941.1| putative dCMP deaminase [Prevotella denticola F0289]
 gi|326946111|gb|AEA21996.1| putative dCMP deaminase [Prevotella denticola F0289]
          Length = 170

 Score = 39.7 bits (91), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 52/130 (40%), Gaps = 35/130 (26%)

Query: 20  WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------------HAEVQA- 59
           W          V  L+VK+ ++I  G   Y G P                   HAE  A 
Sbjct: 35  WAENSYCKRRQVGALVVKNKMIISDG---YNGTPSGFENVCEDEAGVTKSYVLHAEANAI 91

Query: 60  --LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
             L  +G  + G+T YVT  PC        CA+ II+ GI RVV        R++  G+ 
Sbjct: 92  TKLARSGNNSEGSTLYVTASPC------IECAKLIIQAGICRVVYA---EKYRLTD-GID 141

Query: 118 WLSQKGIIVD 127
            L + GI V+
Sbjct: 142 LLKRAGIEVE 151


>gi|332295153|ref|YP_004437076.1| CMP/dCMP deaminase zinc-binding protein [Thermodesulfobium
           narugense DSM 14796]
 gi|332178256|gb|AEE13945.1| CMP/dCMP deaminase zinc-binding protein [Thermodesulfobium
           narugense DSM 14796]
          Length = 154

 Score = 39.7 bits (91), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 11/60 (18%)

Query: 54  HAEVQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+ A+++A +       +G+T Y +LEPC        CA  IIEC I+ V+ CV   +
Sbjct: 51  HAEILAIKKAIQRYNRWYIQGSTIYCSLEPC------LMCAGAIIECKIKNVIFCVSSKN 104


>gi|323143534|ref|ZP_08078213.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Succinatimonas hippei YIT 12066]
 gi|322416695|gb|EFY07350.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Succinatimonas hippei YIT 12066]
          Length = 175

 Score = 39.7 bits (91), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 16/116 (13%)

Query: 7   DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIG--RGVTAYGGCPHAEVQALEE 62
           D  FMS AL  +R  W +G      +V     K+ + +G  R +     C HAE+ AL  
Sbjct: 6   DEYFMSLALSQARHAWDLGEIPVG-AVIVNAAKEIVSVGCNRTIIDNDPCAHAEIVALRN 64

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AG+          T YVTLEPC        C+  +I   ++R+V    DP     G
Sbjct: 65  AGKILDTYRLTDLTMYVTLEPCCM------CSGALIHARLKRLVYGAKDPKTGACG 114


>gi|282162767|ref|YP_003355152.1| hypothetical protein MCP_0097 [Methanocella paludicola SANAE]
 gi|282155081|dbj|BAI60169.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 162

 Score = 39.7 bits (91), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 38/83 (45%), Gaps = 13/83 (15%)

Query: 54  HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           HAE  A+ +A   G    GAT Y T +PC        C + II C I RVV     PD  
Sbjct: 80  HAEQNAIIQAAIHGVSIEGATVYCTHQPCI------LCTKMIINCKINRVVFQNGYPD-- 131

Query: 111 VSGRGLQWLSQKGIIVDRMMESE 133
                L++L Q GI V RM   E
Sbjct: 132 --EMSLKFLKQAGIDVLRMPSKE 152


>gi|224367573|ref|YP_002601736.1| putative cytidine/deoxycytidylate deaminase [Desulfobacterium
           autotrophicum HRM2]
 gi|223690289|gb|ACN13572.1| putative cytidine/deoxycytidylate deaminase [Desulfobacterium
           autotrophicum HRM2]
          Length = 181

 Score = 39.7 bits (91), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 21/114 (18%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCP----HAEVQ 58
           DA +M  AL  +            V  +IV DG V+ +G      A  G P    HAE++
Sbjct: 10  DAYYMELAL--ASAQKAFDQGEFPVGAVIVCDGRVVAQGHRVGTGALTGRPSEIDHAEMR 67

Query: 59  ALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           AL+E      G +  GA  + T+EPC        C   II  GI+++V   +DP
Sbjct: 68  ALKELEGLPLGFDPAGAVIFSTMEPCLM------CFSAIILSGIKKIVYAYEDP 115


>gi|15964553|ref|NP_384906.1| putative deaminase protein [Sinorhizobium meliloti 1021]
 gi|307314743|ref|ZP_07594339.1| CMP/dCMP deaminase zinc-binding [Sinorhizobium meliloti BL225C]
 gi|307320037|ref|ZP_07599458.1| CMP/dCMP deaminase zinc-binding [Sinorhizobium meliloti AK83]
 gi|15073731|emb|CAC45372.1| Putative tRNA-specific adenosine deaminase [Sinorhizobium meliloti
           1021]
 gi|306894252|gb|EFN25017.1| CMP/dCMP deaminase zinc-binding [Sinorhizobium meliloti AK83]
 gi|306898967|gb|EFN29613.1| CMP/dCMP deaminase zinc-binding [Sinorhizobium meliloti BL225C]
          Length = 149

 Score = 39.7 bits (91), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 17/122 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEA 63
           ARFM AAL+ +R           +  ++V DG +I     R         HAE++A+  A
Sbjct: 5   ARFMQAALQEARKAAARGEV--PIGAVVVLDGKMIAAAGNRTRELNDITAHAEIEAIRHA 62

Query: 64  G-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                 E   GA  YVTLEPC+       CA  I    IRR+    +DP       G+++
Sbjct: 63  AAAVGDERLSGADLYVTLEPCTM------CAAAISFARIRRLYYGAEDPKGGAVDNGVRF 116

Query: 119 LS 120
            +
Sbjct: 117 YA 118


>gi|319427113|gb|ADV55187.1| CMP/dCMP deaminase zinc-binding protein [Shewanella putrefaciens
           200]
          Length = 169

 Score = 39.7 bits (91), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 17/122 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           M  +  D  +M  A++ +       +    V  ++VKDG  I  G    ++ +    HAE
Sbjct: 1   MEQTELDEYWMQVAMQMAE--KAEAAGEVPVGAVLVKDGQQIATGYNLSISQHDPSAHAE 58

Query: 57  VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +  L  AG++        AT Y+TLEPC+       CA  ++   I RVV    D     
Sbjct: 59  ILCLRSAGKKLENYRLLDATLYITLEPCAM------CAGAMVHSRIARVVYGARDEKTGA 112

Query: 112 SG 113
           +G
Sbjct: 113 AG 114


>gi|330933338|ref|XP_003304140.1| hypothetical protein PTT_16586 [Pyrenophora teres f. teres 0-1]
 gi|311319472|gb|EFQ87774.1| hypothetical protein PTT_16586 [Pyrenophora teres f. teres 0-1]
          Length = 293

 Score = 39.7 bits (91), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 61/145 (42%), Gaps = 25/145 (17%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
           ++   FM  A+  +   + L S    V C+ VKDG +IGRG+        G  HAE  A+
Sbjct: 66  AYHEGFMREAIAMAE--LALKSDETPVGCVFVKDGHIIGRGMNETNRTLNGTRHAEFVAI 123

Query: 61  EEAGEEARGATA-------YVTLEPCSHYGRSPPCAQFIIECGIRRVVV-CVDDPDVRVS 112
             AG  ++   +       YVT+EPC        CA  + + GIR V   C ++   R  
Sbjct: 124 --AGILSKHPISILNETDLYVTVEPCVM------CASMLRQYGIRAVYFGCWNE---RFG 172

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIF 137
           G G          VD+     G IF
Sbjct: 173 GTGGVLNIHSDPSVDKPYPVTGGIF 197


>gi|301090647|ref|XP_002895529.1| deoxycytidylate deaminase [Phytophthora infestans T30-4]
 gi|262097843|gb|EEY55895.1| deoxycytidylate deaminase [Phytophthora infestans T30-4]
          Length = 122

 Score = 39.7 bits (91), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 12/82 (14%)

Query: 47  TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           T Y    HAE+ A L +   + +G + YV L PC+       CA+ II+ GI RVV   D
Sbjct: 33  TKYPYVCHAEMNAILNKNSTDVKGCSIYVALFPCNE------CAKLIIQSGIARVVYYSD 86

Query: 106 DPDVRVSGR-----GLQWLSQK 122
           +     S R     G+Q+   K
Sbjct: 87  NWKFVASRRLLDMAGVQYTQHK 108


>gi|239623208|ref|ZP_04666239.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522174|gb|EEQ62040.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 164

 Score = 39.7 bits (91), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 58/146 (39%), Gaps = 44/146 (30%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAY-GGCP------- 53
           ++D  FM  AL       G  S +PS    AC++ +D  ++  G   +  GC        
Sbjct: 10  TWDEYFMGVALL-----SGRRSKDPSTQVGACIVSQDNKILSMGYNGFPKGCSDDEFPWG 64

Query: 54  -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                            H+E+ A L   G    G+  YVTL PC+       CA+ II+ 
Sbjct: 65  KEKQEEDPYNSKYFYSTHSELNAILNYRGGSLEGSKLYVTLFPCNE------CAKAIIQA 118

Query: 96  GIRRVVVCVDD----PDVRVSGRGLQ 117
           GI+ ++   D     P VR S R L 
Sbjct: 119 GIKTIIYGEDKYAETPAVRASKRMLN 144


>gi|145224494|ref|YP_001135172.1| hypothetical protein Mflv_3913 [Mycobacterium gilvum PYR-GCK]
 gi|315444825|ref|YP_004077704.1| pyrimidine reductase, riboflavin biosynthesis [Mycobacterium sp.
           Spyr1]
 gi|145216980|gb|ABP46384.1| bifunctional deaminase-reductase domain protein [Mycobacterium
           gilvum PYR-GCK]
 gi|315263128|gb|ADT99869.1| pyrimidine reductase, riboflavin biosynthesis [Mycobacterium sp.
           Spyr1]
          Length = 257

 Score = 39.7 bits (91), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 14/151 (9%)

Query: 186 LRAQSDAILVGIGTVLADD---------PELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
           LR  +D I+VG  TV ++D           L  +  G  E  P+  +L    +L  D+K+
Sbjct: 72  LRELADVIVVGAQTVRSEDYSGVRLSASARLARQQRGQSEVPPI-AVLTRSGRLDRDAKL 130

Query: 237 IKTALLAPVIIVTEN--DDP--VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
                + P+I+ +    DD   +L       + +    D  D  + LT+L  RG+  +L 
Sbjct: 131 FTRTDVPPLILTSTRALDDTRRLLGSVAEVLDASGAQPDSVDPAQALTLLAERGLRRVLT 190

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           EGG  +   F +  LVD + +  + +++G G
Sbjct: 191 EGGPGILGMFTDDDLVDELCVTVAPLLLGGG 221


>gi|123441377|ref|YP_001005364.1| tRNA-specific adenosine deaminase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088338|emb|CAL11129.1| putative zinc-binding protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 161

 Score = 39.7 bits (91), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V D  VIG G    +       HAE+ AL + G+  +      AT YVTLEPC  
Sbjct: 19  VGAILVLDNQVIGEGWNRPIRDNDPTAHAEIMALRQGGQVVQNYRLIDATLYVTLEPCVM 78

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  ++   IRR+V   +D     +G  +  L   G+
Sbjct: 79  ------CAGAMVHSRIRRLVYGANDLKTGAAGSLVDILRHPGM 115


>gi|54294609|ref|YP_127024.1| hypothetical protein lpl1685 [Legionella pneumophila str. Lens]
 gi|53754441|emb|CAH15925.1| hypothetical protein lpl1685 [Legionella pneumophila str. Lens]
          Length = 149

 Score = 39.7 bits (91), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 18/128 (14%)

Query: 29  PSVACLIVKDGIV--IGRGVTAYGGCP--HAEVQALEEAGEEARG-----ATAYVTLEPC 79
           P  A L+ KD  +  +GR V      P  HAE++A+ +A  +         T YVTLEPC
Sbjct: 26  PVGAVLVSKDNQLLGVGRNVIEKSHDPSDHAEIRAIRQASRKLNNHRLLDTTLYVTLEPC 85

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG---RGLQWLSQKGIIVDRMMESEGKI 136
                   CA  ++   I+R+V    D     +G     L  L+   +I + +M++E   
Sbjct: 86  ------VMCAGLMVHARIKRLVFATRDFKAGAAGSIFNVLHALNHSVLIDEGIMQAECSQ 139

Query: 137 FLHAYLTR 144
            L  +  +
Sbjct: 140 LLSDFFRK 147


>gi|89094120|ref|ZP_01167063.1| hypothetical protein MED92_16295 [Oceanospirillum sp. MED92]
 gi|89081595|gb|EAR60824.1| hypothetical protein MED92_16295 [Oceanospirillum sp. MED92]
          Length = 168

 Score = 39.7 bits (91), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 17/136 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           M  S  D  +M  AL  +     L      V  L+V DG V+G G    ++      HAE
Sbjct: 1   MDTSKTDLHWMERALELADRAEQLNEV--PVGALVVLDGEVVGEGWNHPISGNDPTAHAE 58

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL  A ++       GA  +VT+EPC+       C+  I+   I+RV+    +     
Sbjct: 59  MMALRAAAQKVGNYRLVGAELFVTIEPCTM------CSGAIVHARIKRVIYGATEAKSGA 112

Query: 112 SGRGLQWLSQKGIIVD 127
                Q  SQ  I  D
Sbjct: 113 VDSNCQLFSQPWINHD 128


>gi|302873177|ref|YP_003841810.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulovorans 743B]
 gi|307688659|ref|ZP_07631105.1| CMP/dCMP deaminase zinc-binding protein [Clostridium cellulovorans
           743B]
 gi|302576034|gb|ADL50046.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulovorans 743B]
          Length = 169

 Score = 39.7 bits (91), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 20/94 (21%)

Query: 27  TNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEE----------ARGATA 72
           T P  A ++  DG ++ +G     T      HAEV A+ +AG +              T 
Sbjct: 24  TYPIGAVIVDDDGNIVSKGRNRVFTESDCTAHAEVDAIRKAGHKLLDIPNKRFVKNNLTL 83

Query: 73  YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           Y T EPC      P C   I+  GI+RVV   DD
Sbjct: 84  YTTCEPC------PMCTCTILLSGIKRVVWAADD 111


>gi|188584656|ref|YP_001916201.1| tRNA-adenosine deaminase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349343|gb|ACB83613.1| tRNA-adenosine deaminase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 158

 Score = 39.7 bits (91), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 18/117 (15%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHA 55
           MP  ++ D  +M  A+  ++  +        +  +IVKD  +I  G     T+     HA
Sbjct: 1   MPSHNNTDKYWMQQAIDQAK--LAYNKGEVPIGAVIVKDEQLIATGFNKRETSQDATSHA 58

Query: 56  EVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           E+ A++ A     G      T YVT+EPC      P CA  I++  I ++V   +DP
Sbjct: 59  EIIAIQSACNYLGGWRLLDCTLYVTIEPC------PMCAGAILQSRITKLVFGTEDP 109


>gi|54297635|ref|YP_124004.1| hypothetical protein lpp1686 [Legionella pneumophila str. Paris]
 gi|53751420|emb|CAH12838.1| hypothetical protein lpp1686 [Legionella pneumophila str. Paris]
          Length = 149

 Score = 39.7 bits (91), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 18/117 (15%)

Query: 29  PSVACLIVKDGIV--IGRGVTAYGGCP--HAEVQALEEAGEEARG-----ATAYVTLEPC 79
           P  A L+ KD  +  +GR V      P  HAE++A+ +A  +         T YVTLEPC
Sbjct: 26  PVGAVLVSKDNQLLGVGRNVIEKSHDPSDHAEIRAIRQASRKLNNHRLLDTTLYVTLEPC 85

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG---RGLQWLSQKGIIVDRMMESE 133
                   CA  ++   I+R+V    D     +G     L  L+   +I + +M++E
Sbjct: 86  ------VMCAGLMVHARIKRLVFATRDFKAGAAGSMFNVLHALNHSVLIDEGIMQAE 136


>gi|301051758|ref|YP_003789969.1| putative cytidine/deoxycytidylate deaminase family protein
           [Bacillus anthracis CI]
 gi|300373927|gb|ADK02831.1| probable cytidine/deoxycytidylate deaminase family protein
           [Bacillus cereus biovar anthracis str. CI]
          Length = 166

 Score = 39.7 bits (91), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 23/170 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM  A+  ++    +      +  +IV +G VI        T      HAE+ A++E
Sbjct: 6   DIYFMQLAIEEAKKAEAIQEV--PIGAVIVLNGEVISAAHNLRETEQRSIAHAELLAIDE 63

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++        AT YVTLEPC      P CA  I+   + RVV    DP    +G  + 
Sbjct: 64  ACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVNRVVYGAGDPKGGCAGTLMN 117

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            L+ +       +V  ++E E    L  +  R++ K+     K+  S +N
Sbjct: 118 LLTDERFNHQCEVVAGVLEEECGTLLTNFF-RELRKKRKAIKKLEKSNEN 166


>gi|296819611|ref|XP_002849875.1| tRNA specific adenosine deaminase [Arthroderma otae CBS 113480]
 gi|238840328|gb|EEQ29990.1| tRNA specific adenosine deaminase [Arthroderma otae CBS 113480]
          Length = 190

 Score = 39.7 bits (91), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE 65
          FM  AL+ +     L +    V C++V  G VIG G+     +  G  HAE  A+EEA  
Sbjct: 14 FMKMALKMA--ETALAAGETPVGCVLVNKGRVIGSGMNDTNKSLNGTRHAEFLAIEEALR 71

Query: 66 EA-----RGATAYVTLEPC 79
                 R    YVT+EPC
Sbjct: 72 SHPRSIFRETDLYVTVEPC 90


>gi|229917437|ref|YP_002886083.1| CMP/dCMP deaminase zinc-binding [Exiguobacterium sp. AT1b]
 gi|229468866|gb|ACQ70638.1| CMP/dCMP deaminase zinc-binding [Exiguobacterium sp. AT1b]
          Length = 166

 Score = 39.7 bits (91), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 47/110 (42%), Gaps = 17/110 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D RFM  A+  ++    +      + C+IVK   VI  G     T      HAE+ A+E 
Sbjct: 4   DERFMQLAIEEAKKAEAIGEV--PIGCVIVKGDQVIATGHNRRETDRLAAAHAEMIAIET 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           A E            YVTLEPC      P CA  I+   ++RV+    DP
Sbjct: 62  ANETLGNWRLEDCELYVTLEPC------PMCAGAIVLSRVKRVIFGAHDP 105


>gi|307245435|ref|ZP_07527523.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307254389|ref|ZP_07536227.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258848|ref|ZP_07540580.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306853776|gb|EFM85993.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862688|gb|EFM94644.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867199|gb|EFM99055.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 196

 Score = 39.7 bits (91), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 16/115 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           + +S  D  FM  AL  +     +    P  A L+ ++G +IG G    +       HAE
Sbjct: 34  LTISEQDIHFMRYALELADRAEAIGEI-PVGAVLVDQEGNIIGEGWNQVIQLSDPSAHAE 92

Query: 57  VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           + A+ +AG+  R       T Y TLEPC+       CA  I+   +RR+V    D
Sbjct: 93  MLAIRQAGKVQRNYRLLDCTLYATLEPCTM------CAGAILHSRLRRLVFGASD 141


>gi|333025914|ref|ZP_08453978.1| putative cytidine/deoxycytidine deaminase [Streptomyces sp. Tu6071]
 gi|332745766|gb|EGJ76207.1| putative cytidine/deoxycytidine deaminase [Streptomyces sp. Tu6071]
          Length = 163

 Score = 39.7 bits (91), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 20/102 (19%)

Query: 54  HAEVQALEEAGE---EAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAEV AL  A     E R  G T  VTLEPC      P CA  + +  + RVV    DP 
Sbjct: 67  HAEVLALRRAAAVRGEWRLTGCTLVVTLEPC------PMCAGALTQSRVERVVYGARDP- 119

Query: 109 VRVSGRGLQW-------LSQKGIIVDRMMESEGKIFLHAYLT 143
            +    G QW       L+ +  +V+ ++  E    L A+ T
Sbjct: 120 -KAGAAGSQWDLLRDRRLNHRAEVVEGVLAPESTALLDAFFT 160


>gi|167623310|ref|YP_001673604.1| zinc-binding CMP/dCMP deaminase [Shewanella halifaxensis HAW-EB4]
 gi|167353332|gb|ABZ75945.1| CMP/dCMP deaminase zinc-binding [Shewanella halifaxensis HAW-EB4]
          Length = 163

 Score = 39.7 bits (91), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 20/129 (15%)

Query: 31  VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++VKDG V+  G     G      HAE+Q L +AG+  +       T YVTLEPC+ 
Sbjct: 19  VGAVLVKDGEVLSAGFNFSIGLHDPSAHAEMQCLRQAGQIMQNYRLLDTTLYVTLEPCA- 77

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
                 CA  I+   I R+V    D     +G  +  +          +   ++ESE   
Sbjct: 78  -----MCAGAIVHSRIGRLVFGAKDEKTGAAGTVIDIVRHSAFNHQVEVSSGVLESECSE 132

Query: 137 FLHAYLTRQ 145
            L A+  R+
Sbjct: 133 QLSAFFKRR 141


>gi|167520965|ref|XP_001744821.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776435|gb|EDQ90054.1| predicted protein [Monosiga brevicollis MX1]
          Length = 143

 Score = 39.7 bits (91), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 31/103 (30%)

Query: 28  NPSVACLIVK-DGIVIGRGVTAYG-GCP----------------------HAEVQALEEA 63
           N  V C I+  DGIV+  G   +  GC                       HAE+ A+   
Sbjct: 27  NTQVGCTIINPDGIVVSMGYNGFPIGCSDQELPWQKHSANPLETKFPYVCHAEMNAILNT 86

Query: 64  GEEA-RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
            +E+ RG T Y TL PC+       CA+ II+ GI  VV   D
Sbjct: 87  NDESVRGCTLYATLFPCNE------CAKMIIQAGIVEVVYLCD 123


>gi|324503290|gb|ADY41431.1| Deoxycytidylate deaminase [Ascaris suum]
          Length = 284

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 7/63 (11%)

Query: 47  TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           T Y    HAE+ A L    E  +G+T Y  L PC+       CA+ II+ GI  VV   D
Sbjct: 173 TKYPFVCHAEMNAILNRNCESVKGSTIYTVLFPCNE------CAKLIIQAGISEVVYKRD 226

Query: 106 DPD 108
            PD
Sbjct: 227 KPD 229


>gi|261367117|ref|ZP_05980000.1| tRNA-specific adenosine deaminase [Subdoligranulum variabile DSM
           15176]
 gi|282571240|gb|EFB76775.1| tRNA-specific adenosine deaminase [Subdoligranulum variabile DSM
           15176]
          Length = 153

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 62/158 (39%), Gaps = 23/158 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
           D + M  AL  +R    L      V  +I KDG ++ R             HAE+ A++ 
Sbjct: 3   DEQLMQVALEEARIAAALGEV--PVGAVIAKDGEIVARAHNLRERGKNATYHAELLAIDA 60

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G        +VTLEPC      P C+  II   +RRVV    DP     G GL 
Sbjct: 61  ACKALGGWRLWQCELFVTLEPC------PMCSGAIINSRLRRVVYGARDPKAGCCG-GLT 113

Query: 118 WL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
            L     +   +I   +++ + +  L  +     EKR 
Sbjct: 114 DLFALPFNHHPVIEQGLLQEDAQALLQDFFVMLREKRK 151


>gi|325662866|ref|ZP_08151435.1| hypothetical protein HMPREF0490_02175 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470918|gb|EGC74147.1| hypothetical protein HMPREF0490_02175 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 163

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 17/116 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
           D ++M  A+R ++    L      + C+IV    +I RG            HAE+ A+ +
Sbjct: 4   DEKYMKEAIRQAKKAYALKEV--PIGCVIVYQDKIIARGYNRRTIDKNTLAHAELIAIRK 61

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A  +         T YVTLEPC        C+  I++  +++VVV   +P    +G
Sbjct: 62  ASRKMDDWRLEDCTMYVTLEPCQM------CSGAIVQSRMKKVVVGCMNPKAGCAG 111


>gi|228937324|ref|ZP_04099972.1| hypothetical protein bthur0008_110 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970210|ref|ZP_04130871.1| hypothetical protein bthur0003_100 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228976780|ref|ZP_04137194.1| hypothetical protein bthur0002_100 [Bacillus thuringiensis Bt407]
 gi|228782942|gb|EEM31106.1| hypothetical protein bthur0002_100 [Bacillus thuringiensis Bt407]
 gi|228789511|gb|EEM37429.1| hypothetical protein bthur0003_100 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228822349|gb|EEM68329.1| hypothetical protein bthur0008_110 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326937814|gb|AEA13710.1| cytosine deaminase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 166

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 20/136 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  +IV DG VI        T      HAE+ A++EA ++        AT YVTLEPC  
Sbjct: 28  IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDEACKKLGTWRLEDATLYVTLEPC-- 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P CA  I+   ++RVV    DP    +G  +  L+ +       +V  ++E E   
Sbjct: 86  ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVSGVLEEECGT 141

Query: 137 FLHAYLTRQVEKRSHI 152
            L  +     +KR  I
Sbjct: 142 LLTNFFRELRKKRKAI 157


>gi|255084043|ref|XP_002508596.1| ytidine and deoxycytidylated deaminase zinc-binding protein
           [Micromonas sp. RCC299]
 gi|226523873|gb|ACO69854.1| ytidine and deoxycytidylated deaminase zinc-binding protein
           [Micromonas sp. RCC299]
          Length = 443

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 7/49 (14%)

Query: 54  HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           HAE+ A + +  +   GAT YVT+ PC+       CA+ II+ GIR VV
Sbjct: 226 HAEMNAIMNKNSQSLHGATVYVTMYPCNE------CAKLIIQSGIREVV 268


>gi|297170608|gb|ADI21634.1| cytosine/adenosine deaminases [uncultured myxobacterium
           HF0130_06F04]
          Length = 159

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 17/116 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  +M AA  F+            V  L++ +  V+GRG     T +    HAE+ A+ E
Sbjct: 4   DESWMQAA--FAEAEKARALGEVPVGALVIYEDRVVGRGFNRRETDHDPLAHAEILAIGE 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A +        G   YVTLEPC      P CA  I+   + R+V    DP    +G
Sbjct: 62  AAKTLGRWRLSGCELYVTLEPC------PMCAGAIVNSRLDRLVFGATDPRAGAAG 111


>gi|318062198|ref|ZP_07980919.1| cytidine/deoxycytidine deaminase [Streptomyces sp. SA3_actG]
 gi|318079391|ref|ZP_07986723.1| cytidine/deoxycytidine deaminase [Streptomyces sp. SA3_actF]
          Length = 163

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 20/102 (19%)

Query: 54  HAEVQALEEAGE---EAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAEV AL  A     E R  G T  VTLEPC      P CA  + +  + RVV    DP 
Sbjct: 67  HAEVLALRRAAAVRGEWRLTGCTLVVTLEPC------PMCAGALTQSRVERVVYGARDP- 119

Query: 109 VRVSGRGLQW-------LSQKGIIVDRMMESEGKIFLHAYLT 143
            +    G QW       L+ +  +V+ ++  E    L A+ T
Sbjct: 120 -KAGAAGSQWDLLRDRRLNHRAEVVEGVLAPESTALLDAFFT 160


>gi|291287100|ref|YP_003503916.1| CMP/dCMP deaminase zinc-binding protein [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290884260|gb|ADD67960.1| CMP/dCMP deaminase zinc-binding protein [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 158

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 15/86 (17%)

Query: 31  VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           +  ++V +G VIGRG     +      HAE+ A+E+A  +         T YVTLEPC  
Sbjct: 30  IGAVVVSEGAVIGRGSNKKNSGKSALNHAEIIAIEDASSKIGDWRLDECTLYVTLEPC-- 87

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDP 107
                 CA  II   IR V+    +P
Sbjct: 88  ----LMCAGAIIHARIRNVIFGTTEP 109


>gi|283131456|dbj|BAI63455.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae
          subsp. equisimilis]
          Length = 183

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE 65
          FM  AL+ +     L      + C+IVKDG +IGRG      +     HAE+ A+ EA  
Sbjct: 19 FMQEALKEA--EKSLQKAEIPIGCVIVKDGEIIGRGHNVREESNQAIMHAEMMAINEANA 76

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 77 HEGNWRLLDTTMFVTIEPC 95


>gi|301169624|emb|CBW29225.1| tRNA-specific adenosine deaminase [Haemophilus influenzae 10810]
          Length = 173

 Score = 39.3 bits (90), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 16/112 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59
           S FD + M  AL  +     L    P  A L+   G +IG G    +       HAE+ A
Sbjct: 8   SEFDEKMMRYALELADKAEALGEI-PVGAVLVDDAGNIIGEGWNLSIVQSDPTAHAEIIA 66

Query: 60  LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           L    +  +      +T YVTLEPC+       CA  I+   I+R+V    D
Sbjct: 67  LRNGAKNIQNYRLLNSTLYVTLEPCTM------CAGAILHSRIKRLVFGASD 112


>gi|228905818|ref|ZP_04069717.1| hypothetical protein bthur0013_110 [Bacillus thuringiensis IBL 200]
 gi|228853826|gb|EEM98584.1| hypothetical protein bthur0013_110 [Bacillus thuringiensis IBL 200]
          Length = 166

 Score = 39.3 bits (90), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 20/136 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  +IV DG VI        T      HAE+ A++EA ++        AT YVTLEPC  
Sbjct: 28  IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDEACKKLGTWRLEDATLYVTLEPC-- 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P CA  I+   ++RVV    DP    +G  +  L+ +       +V  ++E E   
Sbjct: 86  ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVTGVLEEECGT 141

Query: 137 FLHAYLTRQVEKRSHI 152
            L  +     +KR  I
Sbjct: 142 LLTNFFRELRKKRKAI 157


>gi|332162680|ref|YP_004299257.1| tRNA-specific adenosine deaminase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666910|gb|ADZ43554.1| tRNA-specific adenosine deaminase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860305|emb|CBX70619.1| tRNA-specific adenosine deaminase [Yersinia enterocolitica W22703]
          Length = 196

 Score = 39.3 bits (90), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V D  VIG G    +       HAE+ AL + G+  +      AT YVTLEPC  
Sbjct: 54  VGAILVLDNQVIGEGWNRPIRDNDPTAHAEIMALRQGGQVVQNYRLIDATLYVTLEPCVM 113

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  ++   IRR+V   +D     +G  +  L   G+
Sbjct: 114 ------CAGAMVHSRIRRLVYGANDLKTGAAGSLVDILRHPGM 150


>gi|323704821|ref|ZP_08116398.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535747|gb|EGB25521.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 172

 Score = 39.3 bits (90), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 13/79 (16%)

Query: 54  HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           HAE  A+ +A   G   + AT YV+  PCS       CA+ II  GI+RVV   D PD  
Sbjct: 101 HAEQNAIIQAALNGVSTKDATIYVSASPCSM------CAKMIINAGIKRVVYEGDYPD-- 152

Query: 111 VSGRGLQWLSQKGIIVDRM 129
                 ++L +  + V +M
Sbjct: 153 --NLSFEYLKEASVEVVKM 169


>gi|254438319|ref|ZP_05051813.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Octadecabacter antarcticus 307]
 gi|198253765|gb|EDY78079.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Octadecabacter antarcticus 307]
          Length = 509

 Score = 39.3 bits (90), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 9/59 (15%)

Query: 46  VTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           +T YG   HAE+ ++ +A   G   +GAT +VT  PC +      CA+ II  GI R+V
Sbjct: 366 ITEYGRMVHAEMNSISDAARLGRRIQGATMHVTTFPCHN------CAKHIIAAGISRLV 418


>gi|285018425|ref|YP_003376136.1| cytidine / deoxycytidylate deaminase [Xanthomonas albilineans GPE
           PC73]
 gi|283473643|emb|CBA16146.1| putative cytidine / deoxycytidylate deaminase protein [Xanthomonas
           albilineans]
          Length = 165

 Score = 39.3 bits (90), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 15/116 (12%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D R+M  AL  +          P  A L+  +  V+G G    +  +    HAE+ AL +
Sbjct: 11  DERWMRHALALAERAEREFDEIPVGAVLVSAEDAVLGEGWNLNIAEHDPSAHAEIVALRQ 70

Query: 63  AG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AG         G+T YVTLEPC+       CA  ++   +  +V    DP     G
Sbjct: 71  AGRRLGNHRLPGSTLYVTLEPCAM------CAMALVHARVAELVYAAADPKTGACG 120


>gi|50086283|ref|YP_047793.1| putative cytidine / deoxycytidylate deaminase family protein
           [Acinetobacter sp. ADP1]
 gi|49532259|emb|CAG69971.1| putative cytidine / deoxycytidylate deaminase family protein
           [Acinetobacter sp. ADP1]
          Length = 519

 Score = 39.3 bits (90), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 9/71 (12%)

Query: 44  RGVTAYGGCPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           + +T YG   HAE+ AL     +    +GAT +VT  PC +      CA+ II  GI +V
Sbjct: 361 KKITEYGRVVHAEMDALLSCSRSNISTQGATLFVTTFPCHN------CAKHIISAGIEKV 414

Query: 101 VVCVDDPDVRV 111
           V     P  + 
Sbjct: 415 VFVEPYPKSKA 425


>gi|311898589|dbj|BAJ30997.1| putative truncated riboflavin-specific deaminase/reductase
           [Kitasatospora setae KM-6054]
          Length = 100

 Score = 39.3 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 30/56 (53%)

Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           D  D   +L  L  RGV  L+VEGG  +   F++  L D I L  + +++G+ G P
Sbjct: 6   DTVDFGLMLEDLAARGVQRLMVEGGGQIHTQFLSLGLADEIHLAVAPLLVGDAGAP 61


>gi|284036841|ref|YP_003386771.1| CMP/dCMP deaminase zinc-binding protein [Spirosoma linguale DSM 74]
 gi|283816134|gb|ADB37972.1| CMP/dCMP deaminase zinc-binding protein [Spirosoma linguale DSM 74]
          Length = 186

 Score = 39.3 bits (90), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 11/86 (12%)

Query: 54  HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           HAE  A+  A   G E  G+T YVTL PC        CA+ I    I RVV      + +
Sbjct: 93  HAEQNAILYAAKNGSEIEGSTIYVTLSPCIA------CARIIYSMKIARVVFLNSYAEYK 146

Query: 111 --VSGRGLQWLSQKGIIVDRMMESEG 134
              S  G+ +L + G+ V+R + S G
Sbjct: 147 GIPSDEGVDFLRRFGVTVERYVSSSG 172


>gi|229188306|ref|ZP_04315357.1| Uncharacterized deaminase yaaJ [Bacillus cereus ATCC 10876]
 gi|228595174|gb|EEK52942.1| Uncharacterized deaminase yaaJ [Bacillus cereus ATCC 10876]
          Length = 166

 Score = 39.3 bits (90), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 16/109 (14%)

Query: 54  HAEVQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+ A++EA ++        AT YVTLEPC      P CA  I+   ++RVV    DP 
Sbjct: 55  HAELLAIDEACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPK 108

Query: 109 VRVSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHI 152
              +G  +  L+ +       +V  ++E E    L ++     +KR  I
Sbjct: 109 GGCAGTLMNLLTDERFNHQCEVVSGVLEEECGTLLTSFFRELRKKRKAI 157


>gi|291569301|dbj|BAI91573.1| putative cytidine/deoxycytidylate deaminase [Arthrospira platensis
           NIES-39]
          Length = 157

 Score = 39.3 bits (90), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 16/117 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEV 57
           P  +  + +M  AL+      G     P  A ++ + G +I +G       P    HAE+
Sbjct: 3   PTYTTHSHWMQQALKLGA-AAGEAGEVPVGALIVNQQGKLIAQGENRRERDPDPTAHAEI 61

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
            AL +A +          T YVTLEPC      P CA  I++  I  +V  VDDP  
Sbjct: 62  IALRQASQVLGDWHLNTCTLYVTLEPC------PMCAGAILQARIGLLVYGVDDPKT 112


>gi|169335874|ref|ZP_02863067.1| hypothetical protein ANASTE_02307 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258612|gb|EDS72578.1| hypothetical protein ANASTE_02307 [Anaerofustis stercorihominis DSM
           17244]
          Length = 145

 Score = 39.3 bits (90), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 15/100 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCSH 81
           V  LIVKD  +I +     +       HAE+ A+ EA          G + YVTLEPC  
Sbjct: 21  VGALIVKDDKIISKAHNEVIKNNDPTAHAEILAIREACSILDSYNLSGCSIYVTLEPC-- 78

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
               P CA  II   I +VV    D D    G     L  
Sbjct: 79  ----PMCAGAIINAKIDKVVYGAMDMDYGACGSKYNLLED 114


>gi|238918820|ref|YP_002932334.1| cytidine and deoxycytidylate deaminase family protein [Edwardsiella
           ictaluri 93-146]
 gi|238868388|gb|ACR68099.1| cytidine and deoxycytidylate deaminase family protein [Edwardsiella
           ictaluri 93-146]
          Length = 170

 Score = 39.3 bits (90), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 24/150 (16%)

Query: 29  PSVACLIVKDGIV---IGRGVTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCS 80
           P  A L++ D ++     R +T +    HAE+ AL++ G   +      AT YVTLEPC 
Sbjct: 27  PVGAVLVLNDRVIGEGWNRPITRHDPTAHAEIMALQQGGAVMQNYRLLEATLYVTLEPCV 86

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
                  CA  ++   IRR+V    D     +G  L  L   G+  +  +E  G +   A
Sbjct: 87  M------CAGAMVHSRIRRLVYGAPDLKTGAAGSLLDVLGHPGM--NHRIEVCGGVLADA 138

Query: 141 --------YLTRQVEKRSHITLKIAVSQDN 162
                   +  R+ +KR+    + +   D+
Sbjct: 139 CAAQLSDFFRQRRAQKRAERDARRSAHSDD 168


>gi|332186892|ref|ZP_08388634.1| ribD C-terminal domain protein [Sphingomonas sp. S17]
 gi|332013225|gb|EGI55288.1| ribD C-terminal domain protein [Sphingomonas sp. S17]
          Length = 228

 Score = 39.3 bits (90), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 6/99 (6%)

Query: 244 PVIIVTEND--DPVLALAFRKKNINIIYCDCR--DLKKLLTILVGR-GVTSLLVEGGAAV 298
           P+++V   D  D  LA   R   ++ I+      DL+ +  IL    GV +LLVEGG   
Sbjct: 99  PIVVVLTKDVADSHLA-GLRADGVSYIFAGAETIDLRAVPEILNRELGVKTLLVEGGGTA 157

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
              F+ + L+D I +     V G  G PS    G  E N
Sbjct: 158 NGEFLRAGLIDEISMALCPAVDGGAGAPSLFHSGDAEAN 196


>gi|210614123|ref|ZP_03290059.1| hypothetical protein CLONEX_02272 [Clostridium nexile DSM 1787]
 gi|210150824|gb|EEA81832.1| hypothetical protein CLONEX_02272 [Clostridium nexile DSM 1787]
          Length = 162

 Score = 39.3 bits (90), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 42/141 (29%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVA---CLIVKDGIVIGRGVTAYG-GCP------- 53
           S+D  FM  A+       G+ S +PS     C++ +D  ++  G   +  GC        
Sbjct: 10  SWDEYFMGVAML-----SGMRSKDPSTQVGCCIVSQDNKILSMGYNGFPIGCSDDEFPWE 64

Query: 54  ---------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                          H+E+ A L  +G    GA  YV+L PC+       CA+ II+ GI
Sbjct: 65  REGDDPLETKYLYSTHSELNAILNYSGGSLAGAKLYVSLFPCNE------CAKAIIQSGI 118

Query: 98  RRVVV----CVDDPDVRVSGR 114
           R V+       D P V  S R
Sbjct: 119 REVIYDCDKYADTPSVIASKR 139


>gi|119775487|ref|YP_928227.1| cytidine/deoxycytidylate deaminase family protein [Shewanella
           amazonensis SB2B]
 gi|119767987|gb|ABM00558.1| tRNA-adenosine deaminase [Shewanella amazonensis SB2B]
          Length = 190

 Score = 39.3 bits (90), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           V  ++V++G+VI  G     G      HAE+Q L EAG           T YVTLEPC+ 
Sbjct: 49  VGAVLVREGLVIATGYNHNIGLNDPSAHAEMQCLREAGRMLGNYRLLDTTLYVTLEPCAM 108

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 CA  ++   I R+V    D     +G
Sbjct: 109 ------CAGVMVHSRIERLVFGAKDEKTGAAG 134


>gi|318606786|emb|CBY28284.1| tRNA-specific adenosine-34 deaminase [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 183

 Score = 39.3 bits (90), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V D  VIG G    +       HAE+ AL + G+  +      AT YVTLEPC  
Sbjct: 41  VGAILVLDNQVIGEGWNRPIRDNDPTAHAEIMALRQGGQVVQNYRLIDATLYVTLEPCVM 100

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  ++   IRR+V   +D     +G  +  L   G+
Sbjct: 101 ------CAGAMVHSRIRRLVYGANDLKTGAAGSLVDILRHPGM 137


>gi|90416322|ref|ZP_01224254.1| cytidine/deoxycytidylate deaminase family protein [marine gamma
           proteobacterium HTCC2207]
 gi|90332047|gb|EAS47261.1| cytidine/deoxycytidylate deaminase family protein [marine gamma
           proteobacterium HTCC2207]
          Length = 160

 Score = 39.3 bits (90), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 17/112 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
           S D  FM  A+  +  H         V  L+VK+G VIG G    +T+     HAE+ A+
Sbjct: 2   SLDEEFMGRAMELA--HQAAAVGEVPVGALVVKEGRVIGEGYNQPITSCDPTGHAEIIAM 59

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
             A +        G   YVT+EPC+       C   ++   I ++V    +P
Sbjct: 60  RNAAQTLGNYRLSGCDLYVTIEPCTM------CVGAMVHARIGKIVFGAKEP 105


>gi|229542244|ref|ZP_04431304.1| CMP/dCMP deaminase zinc-binding [Bacillus coagulans 36D1]
 gi|229326664|gb|EEN92339.1| CMP/dCMP deaminase zinc-binding [Bacillus coagulans 36D1]
          Length = 169

 Score = 39.3 bits (90), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 16/106 (15%)

Query: 47  TAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           T      HAE+ A+E+A E         A  YVTLEPC      P C+  +++  I+RVV
Sbjct: 47  TTQRAAAHAELLAIEKACEVTGSWRLENAELYVTLEPC------PMCSGAVLQSRIKRVV 100

Query: 102 VCVDDPDVRVSGRGLQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
               DP    +G  +  L     + +  +V  ++E+E    L ++ 
Sbjct: 101 YGAKDPKAGCAGSLMNLLEDGRFNHRSEVVSGVLETECGELLRSFF 146


>gi|227820996|ref|YP_002824966.1| putative cytidine and deoxycytidylate deaminase [Sinorhizobium
           fredii NGR234]
 gi|227339995|gb|ACP24213.1| putative cytidine and deoxycytidylate deaminase [Sinorhizobium
           fredii NGR234]
          Length = 150

 Score = 39.3 bits (90), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 62/154 (40%), Gaps = 32/154 (20%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG---------RGVTAYGGCPHAEVQA 59
           R+M AAL  +R           +  ++V DG V+          R +TA     HAE++A
Sbjct: 7   RYMDAALDEARKAAARGEV--PIGAVVVLDGEVVAAAGNRTRELRDITA-----HAEIEA 59

Query: 60  LEEAG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           + +A      E   GA  YVTLEPC+       CA  I    IRR+    +DP       
Sbjct: 60  IRQAAAAVGDERLSGADLYVTLEPCTM------CAAAISFARIRRLYYGAEDPKGGAVEN 113

Query: 115 GLQWLSQKGI-----IVDRMMESEGKIFLHAYLT 143
           G+++           +   + E E    L A+ T
Sbjct: 114 GVRFYGSPTCHHVPDVYSGLAEREAADLLRAFFT 147


>gi|308814577|ref|YP_003934851.1| dCMP deaminase [Shigella phage SP18]
 gi|308206169|gb|ADO19568.1| dCMP deaminase [Shigella phage SP18]
          Length = 193

 Score = 39.3 bits (90), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 9/53 (16%)

Query: 54  HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           HAE+ A+      G    GAT YVTL PC      P CA+ I + GI+++V C
Sbjct: 104 HAELNAILFAARMGSSIEGATMYVTLSPC------PDCAKAISQSGIKKLVYC 150


>gi|242058805|ref|XP_002458548.1| hypothetical protein SORBIDRAFT_03g035540 [Sorghum bicolor]
 gi|241930523|gb|EES03668.1| hypothetical protein SORBIDRAFT_03g035540 [Sorghum bicolor]
          Length = 228

 Score = 39.3 bits (90), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 65/164 (39%), Gaps = 43/164 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAY------------ 49
           S+D  FM+ A   +       S +P+    ACL+ ++GI++G G   +            
Sbjct: 69  SWDDYFMAIAFLSAE-----RSKDPNRQVGACLVSQEGIILGIGYNGFPRGCSDDKLPWA 123

Query: 50  ----GGCP---------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                G P         HAEV A L      A G   YVT+ PC+       CA+ II+ 
Sbjct: 124 KKSANGNPLETKFPYVVHAEVNAILNTNHASAAGQKLYVTMFPCNE------CAKIIIQS 177

Query: 96  GIRRVVVCVD---DPDVRVSGRGLQWLSQKGIIVDRMMESEGKI 136
           G+  V+  V+   D    V     + LS  GI V +      +I
Sbjct: 178 GVSEVIYFVEKKIDNSAHVYVASHKLLSMAGIKVRKHQPQMAQI 221


>gi|89898061|ref|YP_515171.1| cytosine/adenosine deaminases [Chlamydophila felis Fe/C-56]
 gi|89331433|dbj|BAE81026.1| cytosine/adenosine deaminases [Chlamydophila felis Fe/C-56]
          Length = 157

 Score = 39.3 bits (90), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 51/123 (41%), Gaps = 20/123 (16%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
           D  FM  ALR +R           V C+IVKD  +I RG            HAE+  +  
Sbjct: 6   DIFFMKQALREAR--QAYDEDEVPVGCVIVKDNKIIARGHNTIEKLQDPTAHAEILCIGA 63

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +            Y TLEPC        CA  I +  +RR+V     PD+R+ G G  
Sbjct: 64  AAQYLENWRLVDTVLYCTLEPCLM------CAGAIQQARVRRIVWAA--PDLRL-GAGGS 114

Query: 118 WLS 120
           W++
Sbjct: 115 WIN 117


>gi|150019816|ref|YP_001312070.1| CMP/dCMP deaminase, zinc-binding [Clostridium beijerinckii NCIMB
           8052]
 gi|149906281|gb|ABR37114.1| CMP/dCMP deaminase, zinc-binding [Clostridium beijerinckii NCIMB
           8052]
          Length = 149

 Score = 39.3 bits (90), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           V  +IV D  +IGR      T      HAE+ A++EA +         A  YVTLEPC  
Sbjct: 23  VGAVIVLDDKIIGRAHNLKETLNDSTAHAEILAIKEASKFIGDWRLNRAEMYVTLEPC-- 80

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
               P CA  II+  I +V +   + D+   G
Sbjct: 81  ----PMCAGAIIQSRISKVYIGTFNKDMGACG 108


>gi|309778050|ref|ZP_07672990.1| probable deoxycytidylate deaminase [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308914187|gb|EFP59987.1| probable deoxycytidylate deaminase [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 164

 Score = 39.3 bits (90), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 6/61 (9%)

Query: 45  GVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
           G T Y    HAE+ A+  +  + +G + YV+L PC+       CA+ II+ GI R+V   
Sbjct: 68  GNTKYPYVVHAELNAILNSKHDLKGCSIYVSLFPCNE------CAKAIIQSGISRIVYES 121

Query: 105 D 105
           D
Sbjct: 122 D 122


>gi|56751392|ref|YP_172093.1| hypothetical protein syc1383_d [Synechococcus elongatus PCC 6301]
 gi|56686351|dbj|BAD79573.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 161

 Score = 39.3 bits (90), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 15/104 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D RFM  A+  SR    +  T     C+I ++G +I  G    +T      HAE+ A+ +
Sbjct: 6   DERFMRRAIALSRQAGLIDCTGGPFGCVITRNGEIIAEGFNQVLTERDPTWHAEIAAIRQ 65

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           A +  +     G T Y + EPC      P CA  +    + R+V
Sbjct: 66  ACQHLQTVDLSGCTLYTSAEPC------PMCAAAVYWAKLERLV 103


>gi|227356250|ref|ZP_03840639.1| tRNA-specific adenosine deaminase [Proteus mirabilis ATCC 29906]
 gi|227163714|gb|EEI48630.1| tRNA-specific adenosine deaminase [Proteus mirabilis ATCC 29906]
          Length = 176

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V D  +I +G    +       HAE+ AL + G+  +      AT Y+TLEPC  
Sbjct: 29  VGAVLVADNKIIAKGWNHSIIDNDPTAHAEIMALRKGGKHLQNYRLLDATLYITLEPCV- 87

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  I+   ++RVV    D     +G  +  L   G+
Sbjct: 88  -----MCAGAIVHSRVKRVVYGASDLKTGAAGSFIDILQHPGM 125


>gi|188533151|ref|YP_001906948.1| tRNA-specific adenosine deaminase [Erwinia tasmaniensis Et1/99]
 gi|188028193|emb|CAO96051.1| tRNA-specific adenosine deaminase [Erwinia tasmaniensis Et1/99]
          Length = 186

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 56/129 (43%), Gaps = 21/129 (16%)

Query: 7   DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
           D  +M  AL+ +R  W+ G       V  ++V DG VIG G    +  +    HAE+ AL
Sbjct: 26  DEYWMRHALQLARRAWNEG----EVPVGAVLVLDGQVIGEGWNRPIGHHDPTAHAEMMAL 81

Query: 61  EEAG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            + G   E  R    T YVTLEPC        CA  ++   + R+V    D     +G  
Sbjct: 82  RQGGKVIENYRLMDTTLYVTLEPCVM------CAGAMVHGRVGRLVYGARDAKTGAAGSL 135

Query: 116 LQWLSQKGI 124
           L  L   G+
Sbjct: 136 LDVLGHPGM 144


>gi|225028456|ref|ZP_03717648.1| hypothetical protein EUBHAL_02730 [Eubacterium hallii DSM 3353]
 gi|224954206|gb|EEG35415.1| hypothetical protein EUBHAL_02730 [Eubacterium hallii DSM 3353]
          Length = 159

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 65/155 (41%), Gaps = 33/155 (21%)

Query: 5   SFDARFMSAAL------RFSRWHVGLTSTNPSVACLIV-KDGIVIG----------RGV- 46
           S+DA FM  AL      + +   VG    NP    L +  +G+  G          +G  
Sbjct: 8   SWDAYFMGVALLSAQRSKDNNTQVGSCIVNPHNKILSMGYNGMPTGCNDDRMPWERKGTP 67

Query: 47  --TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
             T Y    HAE+ A L  +G   RGA  Y TL PC+       C + II+ GI  V+  
Sbjct: 68  LDTKYLYVCHAELNAILNYSGGSLRGARIYTTLFPCNE------CTKAIIQAGITEVIYY 121

Query: 104 VD---DPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135
            D   D D  ++ + +  L   GI   R  + EGK
Sbjct: 122 SDKYADTDSTIAAKRM--LDMVGITY-RQYQKEGK 153


>gi|296117773|ref|ZP_06836357.1| riboflavin biosynthesis protein RibD protein [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295969504|gb|EFG82745.1| riboflavin biosynthesis protein RibD protein [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 251

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 6/133 (4%)

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR ++D I+VG GTV  +D             +P+ ++ +  F +   SK +  A+  P 
Sbjct: 64  LRERADVIVVGSGTVSIEDYGGAQPTKERPTPAPIAVVTN-SFNVDPQSKFVTEAITPPF 122

Query: 246 IIVTEN--DDPVLA---LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
           +I  +   + P  A    A ++  +  I        +++  L  +G+  ++ EGG  +  
Sbjct: 123 VIANDKSMNSPEYAEKREALKQAGVEFINSGTGSANEIVQALSAKGLNKIVCEGGPGLFG 182

Query: 301 SFINSRLVDSIIL 313
            FI    VD + L
Sbjct: 183 LFIADHAVDQMYL 195


>gi|39934239|ref|NP_946515.1| CMP/dCMP deaminase zinc-binding [Rhodopseudomonas palustris CGA009]
 gi|192289765|ref|YP_001990370.1| CMP/dCMP deaminase zinc-binding [Rhodopseudomonas palustris TIE-1]
 gi|39648087|emb|CAE26607.1| possible cytidine and deoxycytidylate deaminase [Rhodopseudomonas
           palustris CGA009]
 gi|192283514|gb|ACE99894.1| CMP/dCMP deaminase zinc-binding [Rhodopseudomonas palustris TIE-1]
          Length = 148

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 15/100 (15%)

Query: 31  VACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEAG-----EEARGATAYVTLEPCSH 81
           + C+IV+DG+VI     R +T      HAE+ A+ EA      E       YVTLEPC+ 
Sbjct: 25  IGCVIVRDGVVIAKAGNRTLTDRDPTAHAELLAIREAAAKLGSERLVDCDLYVTLEPCTM 84

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                 CA  I    IRR+     DP       G+++  Q
Sbjct: 85  ------CAGAISFARIRRLYFGAFDPKGGAVESGVRFYGQ 118


>gi|295694717|ref|YP_003587955.1| CMP/dCMP deaminase zinc-binding protein [Bacillus tusciae DSM 2912]
 gi|295410319|gb|ADG04811.1| CMP/dCMP deaminase zinc-binding protein [Bacillus tusciae DSM 2912]
          Length = 174

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 53/126 (42%), Gaps = 17/126 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           MP +  D ++M  AL+ +  + G     P +  ++V  G ++G G            HAE
Sbjct: 1   MPDAPRDLQYMERALQLAA-YAGEMGEVP-IGAVVVAGGKILGEGCNLREMWNDPTAHAE 58

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL +A     G    G T YVTLEPC+       C    +   + RVV    DP    
Sbjct: 59  MVALRQAAQAVGGWRLSGTTLYVTLEPCAM------CVGAAVLARVERVVFGAPDPKAGA 112

Query: 112 SGRGLQ 117
            G  LQ
Sbjct: 113 CGSVLQ 118


>gi|254823485|ref|ZP_05228486.1| CMP/dCMP deaminase, zinc-binding protein [Mycobacterium
           intracellulare ATCC 13950]
          Length = 143

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 16/125 (12%)

Query: 29  PSVACLIVKDGIVIGRGVT--AYGGCP--HAEVQALEEAGEEA--RGATAYVTLEPCSHY 82
           P  A L   DG+++GRG       G P  HAEV A   AG +   R      TL PC + 
Sbjct: 19  PIGAALFTADGVLLGRGRNRRVQQGDPSLHAEVDAFRAAGRQRDYRSTVMVTTLSPCWY- 77

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
                C+  + +  I  +VV     + R    G +WL+Q G+ V  + +      + A++
Sbjct: 78  -----CSGLVRQFNIGALVVG----ESRTFTGGHEWLAQHGVTVTVVDDPRCTQMMSAFI 128

Query: 143 TRQVE 147
               E
Sbjct: 129 AEHPE 133


>gi|304439146|ref|ZP_07399064.1| tRNA-specific adenosine deaminase [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304372278|gb|EFM25866.1| tRNA-specific adenosine deaminase [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 147

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           V  ++V  G V+G G     T      HAE++AL+ A +        G   Y TLEPC+ 
Sbjct: 19  VGAVVVLHGKVVGYGYNLKETLNDATEHAELRALKMAAKTLGTYHLEGTKMYTTLEPCA- 77

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  +I   I ++++    P +  +G  L  L ++G 
Sbjct: 78  -----MCAGAMILFRIDKLIIGAKSPRMGAAGSNLNILDREGF 115


>gi|283469850|emb|CAQ49061.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 156

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 54/135 (40%), Gaps = 21/135 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM+ A+  ++    L      +  +I K   VI R      T      HAE  A+E 
Sbjct: 4   DIYFMTLAIEEAKKAARLGEV--PIGAVITKGDEVIARAHNLRETLQQPTAHAEHIAIER 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +        G T YVTLEPC        CA  I+   I RVV   DDP    SG  + 
Sbjct: 62  AAKVLGSWRLEGCTLYVTLEPCVM------CAGTIVMSRIPRVVYGADDPKGGCSGSLMN 115

Query: 118 WLSQKGI----IVDR 128
            L Q       IVD+
Sbjct: 116 LLQQSNFNHRAIVDK 130


>gi|269138128|ref|YP_003294828.1| tRNA-specific adenosine deaminase [Edwardsiella tarda EIB202]
 gi|267983788|gb|ACY83617.1| tRNA-specific adenosine deaminase [Edwardsiella tarda EIB202]
          Length = 180

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 15/126 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIV---IGRGVTAYGGCPHAEVQALEEA 63
           D+ +M  AL+ +          P  A L++ D ++     R +T +    HAE+ AL++ 
Sbjct: 16  DSDWMRHALQLAE-KARAQGEVPVGAVLVLNDRVIGEGWNRPITRHDPTAHAEIMALQQG 74

Query: 64  GEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +      AT YVTLEPC        CA  ++   IRR+V    D     +G  L  
Sbjct: 75  GAIMQNYRLLEATLYVTLEPCVM------CAGAMVHSRIRRLVYGAPDLKTGAAGSLLDV 128

Query: 119 LSQKGI 124
           L   G+
Sbjct: 129 LGHPGM 134


>gi|323342858|ref|ZP_08083090.1| competence protein comEB [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463970|gb|EFY09164.1| competence protein comEB [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 159

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 6/56 (10%)

Query: 46  VTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
            T Y    HAE+ A+  A +  +G T YV+L PC+       C++ II+ GI+ +V
Sbjct: 70  TTKYAYVVHAELNAILNATQSLQGCTIYVSLFPCNE------CSKAIIQSGIKEIV 119


>gi|119485470|ref|ZP_01619798.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Lyngbya
           sp. PCC 8106]
 gi|119457226|gb|EAW38352.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Lyngbya
           sp. PCC 8106]
          Length = 161

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 11/59 (18%)

Query: 54  HAEVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           HAE+  L +AG++ +       T YVTLEPC      P CA  I++  I+ +V  VDDP
Sbjct: 57  HAEILVLRQAGQKLKDWHLNQCTLYVTLEPC------PMCAGAIVQARIQLLVYGVDDP 109


>gi|291614449|ref|YP_003524606.1| CMP/dCMP deaminase zinc-binding protein [Sideroxydans
           lithotrophicus ES-1]
 gi|291584561|gb|ADE12219.1| CMP/dCMP deaminase zinc-binding protein [Sideroxydans
           lithotrophicus ES-1]
          Length = 148

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 17/112 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEE 66
           M AAL  +R      +    V  ++V+DG++IG G  A    +    HAE+ AL +A + 
Sbjct: 1   MRAALDLARQ--AAQAGEVPVGAVVVRDGLIIGHGCNAPISRHDPSAHAEIAALRDAAQH 58

Query: 67  ARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                      +VTLEPC        C   +    I RVV    DP    +G
Sbjct: 59  IGNYRLVDCELFVTLEPCV------MCVGAMFHARIARVVFGAQDPKTGAAG 104


>gi|229015424|ref|ZP_04172427.1| hypothetical protein bcere0030_220 [Bacillus cereus AH1273]
 gi|229021629|ref|ZP_04178217.1| hypothetical protein bcere0029_110 [Bacillus cereus AH1272]
 gi|228739675|gb|EEL90083.1| hypothetical protein bcere0029_110 [Bacillus cereus AH1272]
 gi|228745866|gb|EEL95865.1| hypothetical protein bcere0030_220 [Bacillus cereus AH1273]
          Length = 164

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 17/119 (14%)

Query: 54  HAEVQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+ A++EA ++        AT YVTLEPC      P CA  I+   ++RVV    DP 
Sbjct: 53  HAELLAIDEACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPK 106

Query: 109 VRVSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
              +G  +  L+ +       +V  ++E E    L  +  R++ K+     K+  S  N
Sbjct: 107 GGCAGTLMNLLTDERFNHQCEVVAGVLEEECGTLLTNFF-RELRKKRKEAKKLEKSNTN 164


>gi|313848259|emb|CBY17260.1| putative cytidine/deoxycytidylate deaminase family protein
           [Chlamydophila psittaci RD1]
 gi|328914938|gb|AEB55771.1| cytidine/deoxycytidylate deaminase family protein [Chlamydophila
           psittaci 6BC]
          Length = 157

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 52/123 (42%), Gaps = 20/123 (16%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
           D  FM+ AL+ +R           V C+IVKD  +I RG            HAE+  +  
Sbjct: 6   DIFFMNQALKEAR--QAYDEDEVPVGCVIVKDNKIIARGHNTTEKLQDPTAHAEILCIGA 63

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +            Y TLEPC        CA  I +  IRR+V     PD+R+ G G  
Sbjct: 64  AAQYLENWRLVDTVLYCTLEPCLM------CAGAIQQARIRRIVWAA--PDLRL-GAGGS 114

Query: 118 WLS 120
           W++
Sbjct: 115 WIN 117


>gi|254479893|ref|ZP_05093141.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [marine gamma proteobacterium HTCC2148]
 gi|214039455|gb|EEB80114.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [marine gamma proteobacterium HTCC2148]
          Length = 153

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 15/90 (16%)

Query: 31  VACLIVKDGIVIGRG---VTAYGG-CPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           +  +IVKDG ++G G   V A+     HAEV A+ +A +        G+T YVTLEPC+ 
Sbjct: 29  IGAVIVKDGQLLGEGWNSVIAFKDPTAHAEVVAMRDAAQMTGNYRLPGSTVYVTLEPCTM 88

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
                 CA  +I   +  +V    +P   V
Sbjct: 89  ------CAGAMIHARVAELVFAAKEPKAGV 112


>gi|150024385|ref|YP_001295211.1| cytosine/adenosine deaminase [Flavobacterium psychrophilum
           JIP02/86]
 gi|149770926|emb|CAL42391.1| Probable cytosine/adenosine deaminase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 146

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 28/141 (19%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG---------VTAYGGCPHAEV 57
           D  FM  AL+    +V        V  ++V +  +I +          VTA     HAE+
Sbjct: 7   DEYFMRKALQ--EAYVAFDKEEIPVGAIVVINNRIIAKSHNLTELLNDVTA-----HAEM 59

Query: 58  QALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           QA+  +     G+       YVTLEPC        CA  +    I ++V    DP    +
Sbjct: 60  QAITASANFLGGKYLTNCILYVTLEPCQM------CAGALYWSQISKIVFGASDPQRGFT 113

Query: 113 GRGLQWLSQKGIIVDRMMESE 133
             G Q L  K I+V+ ++ESE
Sbjct: 114 KMGTQ-LHPKTIVVNGILESE 133


>gi|332185432|ref|ZP_08387180.1| cytidine and deoxycytidylate deaminase zinc-binding region family
          protein [Sphingomonas sp. S17]
 gi|332014410|gb|EGI56467.1| cytidine and deoxycytidylate deaminase zinc-binding region family
          protein [Sphingomonas sp. S17]
          Length = 164

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 10/82 (12%)

Query: 7  DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEE 62
          D R+M  AL+ +R      ST+P + C+IV+ G V+          P    HAE+ A+  
Sbjct: 6  DERWMRLALQVARSKGSDPSTSP-LGCVIVRGGQVLAAERNQTHELPDATAHAEMMAIRR 64

Query: 63 AGE-----EARGATAYVTLEPC 79
          A E     E R AT Y TL+PC
Sbjct: 65 ACESVGDLELRDATLYSTLQPC 86


>gi|323701686|ref|ZP_08113358.1| CMP/dCMP deaminase zinc-binding protein [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533459|gb|EGB23326.1| CMP/dCMP deaminase zinc-binding protein [Desulfotomaculum
           nigrificans DSM 574]
          Length = 144

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 15/86 (17%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  ++V +G ++GRG     +      HAE+ A+ EA ++        AT YVT+EPC+ 
Sbjct: 19  IGAVVVAEGAIVGRGHDLRESLCDASAHAEILAMREAAKQLGDWRLNHATLYVTVEPCAM 78

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDP 107
                 CA  I++  +RR+V    +P
Sbjct: 79  ------CAGAIVQFRVRRLVYGAPNP 98


>gi|294496892|ref|YP_003560592.1| tRNA-specific adenosine deaminase [Bacillus megaterium QM B1551]
 gi|294346829|gb|ADE67158.1| tRNA-specific adenosine deaminase [Bacillus megaterium QM B1551]
          Length = 156

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 17/107 (15%)

Query: 54  HAEVQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+ A++EA ++        AT YVTLEPC      P CA  I+   ++RVV    DP 
Sbjct: 53  HAELLAIDEACKKLGTWRLEDATLYVTLEPC------PMCAGAIVLSRVKRVVFGAYDPK 106

Query: 109 VRVSGRGLQWL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
              +G  L  L     + +  +V  M+E E    L  +  R++ +R 
Sbjct: 107 GGCAGTLLNLLEFEKFNHQAQVVGGMLEEECGSLLTTFF-RELRQRK 152


>gi|213964528|ref|ZP_03392728.1| riboflavin biosynthesis protein RibD C- domain protein
           [Corynebacterium amycolatum SK46]
 gi|213952721|gb|EEB64103.1| riboflavin biosynthesis protein RibD C- domain protein
           [Corynebacterium amycolatum SK46]
          Length = 256

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 62/160 (38%), Gaps = 21/160 (13%)

Query: 184 HLLRAQSDAILVGIGTVLADD------PEL--TCRLN-GLQEHSPMRIILDPHFKLSLDS 234
           + LRA +D + VG GT+ A+       PE   T R   G  +H  M   L     L + S
Sbjct: 55  NTLRALADVVFVGTGTIAAEGYGPVEIPEYLETVRQKLGRSKHVAMST-LSRSLDLDIKS 113

Query: 235 KIIKTALLAPVIIVTENDDPV----LALAFRKKNINIIYCDCR-------DLKKLLTILV 283
                A + P II T+ +D         A + K   +     R        +K  L  L 
Sbjct: 114 DFFANAEVNPPIIFTQTEDAFNDEEAKTAHKDKARKMESAGARVVKLPDPSVKAALAWLA 173

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
             G   ++VEGG  +      +  VD + L  S + +G G
Sbjct: 174 EHGYRDIVVEGGPTMYREAFENGCVDELFLTLSPMWVGNG 213


>gi|110801506|ref|YP_698456.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens SM101]
 gi|110682007|gb|ABG85377.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens SM101]
          Length = 166

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 37/127 (29%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAY-GGCP------- 53
           S+D  FM  AL  ++      S +P+    AC++  D  ++G G   +  GC        
Sbjct: 10  SWDEYFMGVALISAK-----RSKDPNTQVGACIVDNDNKIVGIGYNGFPKGCSDDDLPWG 64

Query: 54  --------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                         HAE+ A L   G+  +    Y TL PC+       CA+ II+ GI 
Sbjct: 65  NKGEFLETKYPYACHAELNAILNSTGKNVKNCRVYATLFPCNE------CAKAIIQAGIT 118

Query: 99  RVVVCVD 105
            V+   D
Sbjct: 119 EVIYLSD 125


>gi|224011555|ref|XP_002295552.1| dCMP deaminase [Thalassiosira pseudonana CCMP1335]
 gi|209583583|gb|ACI64269.1| dCMP deaminase [Thalassiosira pseudonana CCMP1335]
          Length = 176

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 7/53 (13%)

Query: 54  HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           HAEV A L +     RGAT YV L PC+       C++ II+ GIR VV   D
Sbjct: 92  HAEVNAILNKCSASVRGATIYVALFPCNE------CSKVIIQSGIREVVYLND 138


>gi|189204912|ref|XP_001938791.1| tRNA-specific adenosine deaminase subunit TAD2 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187985890|gb|EDU51378.1| tRNA-specific adenosine deaminase subunit TAD2 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 234

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 61/145 (42%), Gaps = 25/145 (17%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
           ++   FM  A+  +   + L S    V C+ VKDG +IGRG+        G  HAE  A+
Sbjct: 7   AYHEGFMREAIAMA--ELALKSDETPVGCVFVKDGEIIGRGMNETNRTLNGTRHAEFVAI 64

Query: 61  EEAGEEARGATA-------YVTLEPCSHYGRSPPCAQFIIECGIRRVVV-CVDDPDVRVS 112
             AG  ++   +       YVT+EPC        CA  + + GIR V   C ++   R  
Sbjct: 65  --AGILSKHPISILNETDLYVTVEPCVM------CASMLRQYGIRAVYFGCWNE---RFG 113

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIF 137
           G G          VD+     G IF
Sbjct: 114 GTGGVLNIHSDPSVDKPYPVTGGIF 138


>gi|291544028|emb|CBL17137.1| tRNA-adenosine deaminase [Ruminococcus sp. 18P13]
          Length = 151

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 47/111 (42%), Gaps = 19/111 (17%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTA----YGGCPHAEVQAL 60
           D  +M  A+  +     L      V  L+V+D  G V+GRG       +    HAEV A+
Sbjct: 3   DFAYMRQAMELAEQAAALGEI--PVGALVVQDATGEVLGRGYNRREVDHDPTAHAEVLAI 60

Query: 61  EEAG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
            +A          G T YVTLEPC      P C   II   +RRVV    D
Sbjct: 61  RQAALAIGSWRLSGCTLYVTLEPC------PMCCGTIINARVRRVVFGAYD 105


>gi|167749860|ref|ZP_02421987.1| hypothetical protein EUBSIR_00828 [Eubacterium siraeum DSM 15702]
 gi|167657172|gb|EDS01302.1| hypothetical protein EUBSIR_00828 [Eubacterium siraeum DSM 15702]
          Length = 150

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 16/104 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M+  +  ++         P  A ++ KDG +IG G            HAE+ A+E+
Sbjct: 4   DEEYMTLCIELAK-KAAEKGECPVGAIVVDKDGRIIGEGYNMREAEQMPTAHAEIIAIEQ 62

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           A +          T YVTLEPC      P CA  II   I+R+V
Sbjct: 63  AAKAMNSWRLTECTLYVTLEPC------PMCAGAIINSRIKRLV 100


>gi|206978348|ref|ZP_03239222.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus H3081.97]
 gi|217957598|ref|YP_002336140.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus AH187]
 gi|222093791|ref|YP_002527839.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus Q1]
 gi|228983277|ref|ZP_04143492.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229136865|ref|ZP_04265494.1| Uncharacterized deaminase yaaJ [Bacillus cereus BDRD-ST26]
 gi|229153801|ref|ZP_04281933.1| Uncharacterized deaminase yaaJ [Bacillus cereus ATCC 4342]
 gi|206743440|gb|EDZ54873.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus H3081.97]
 gi|217065488|gb|ACJ79738.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus AH187]
 gi|221237837|gb|ACM10547.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus Q1]
 gi|228629670|gb|EEK86365.1| Uncharacterized deaminase yaaJ [Bacillus cereus ATCC 4342]
 gi|228646600|gb|EEL02805.1| Uncharacterized deaminase yaaJ [Bacillus cereus BDRD-ST26]
 gi|228776457|gb|EEM24808.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 166

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 23/170 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM  A+  ++    +      +  +IV +G VI        T      HAE+ A++E
Sbjct: 6   DIYFMQLAIEEAKKAEAIQEV--PIGAVIVLNGEVISVAHNLRETEQRSIAHAELLAIDE 63

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  + 
Sbjct: 64  ACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMN 117

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            L+ +       +V  ++E E    L  +  R++ K+      +  S++N
Sbjct: 118 LLTDERFNHQCEVVAGVLEEECGTLLTNFF-RELRKKRKAIKNLEKSKEN 166


>gi|157371891|ref|YP_001479880.1| CMP/dCMP deaminase zinc-binding [Serratia proteamaculans 568]
 gi|157323655|gb|ABV42752.1| CMP/dCMP deaminase zinc-binding [Serratia proteamaculans 568]
          Length = 170

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 53/127 (41%), Gaps = 17/127 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  +M  ALR +            V  L+V D  VIG G    +  +    HAE+ AL +
Sbjct: 6   DEYWMRQALRLAL--RAQEEGEVPVGALLVLDNQVIGEGWNRPIGRHDPTAHAEIMALRQ 63

Query: 63  AG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            G   +  R   AT YVTLEPC        CA  ++   IRR+V    D     +G  + 
Sbjct: 64  GGAVLQNYRLLNATLYVTLEPCVM------CAGAMVHSRIRRLVYGAADVKTGAAGSLVD 117

Query: 118 WLSQKGI 124
            L   G+
Sbjct: 118 ILRHPGM 124


>gi|302379537|ref|ZP_07268022.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Finegoldia magna ACS-171-V-Col3]
 gi|302312444|gb|EFK94440.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Finegoldia magna ACS-171-V-Col3]
          Length = 155

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 64/158 (40%), Gaps = 21/158 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D +FM  A+  ++    L      V C+IVK+G +I +      T      HAE++A+ +
Sbjct: 5   DEKFMIKAIEQAKIAFDLDEV--PVGCVIVKNGEIIAQAYNSVETDNNATMHAELKAINQ 62

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +          T YVTLEPC        C   ++   I +VV    D      G  + 
Sbjct: 63  ATKVIGNFRLDDCTMYVTLEPCVM------CTGALVYSRIPKVVFGAFDKKRGACGSLIS 116

Query: 118 WLSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSH 151
               +G    I V  +ME E    + ++  R  EK  +
Sbjct: 117 LNDYEGLNHKIEVKSIMEKECVELMQSFFRRIREKNKN 154


>gi|288575144|ref|ZP_06393501.1| CMP/dCMP deaminase zinc-binding [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288570885|gb|EFC92442.1| CMP/dCMP deaminase zinc-binding [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 162

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 17/93 (18%)

Query: 31  VACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEEARGA------TAYVTLEPCS 80
           V  ++V    VIGRG       +    HAE+ A+ +A + ARG+        YVTLEPC 
Sbjct: 25  VGAVVVYKNDVIGRGRNLRRIDHDPTAHAEIVAIRQAAK-ARGSWNLSGCEIYVTLEPC- 82

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                P CA  I++  I +VV    DP    SG
Sbjct: 83  -----PMCAGAIVQSRIAKVVYGCTDPKAGASG 110


>gi|332638741|ref|ZP_08417604.1| dCMP deaminase [Weissella cibaria KACC 11862]
          Length = 161

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 48/113 (42%), Gaps = 32/113 (28%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCP------------ 53
            M AA+  SR     T T   V  ++VKDG +I  G    VT    C             
Sbjct: 13  MMQAAMLASR----STCTRLHVGAVVVKDGRIIASGYNGSVTGTPHCTEVGDLLVDGHCI 68

Query: 54  ---HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
              HAE  AL    + G  A GA  YVT  PC H      C +F+++ GI+++
Sbjct: 69  RAVHAEQNALMQLAKMGIAAEGAEIYVTDFPCVH------CTKFLLQAGIKKI 115


>gi|314121791|ref|YP_004063910.1| deoxycytidylate deaminase [Enterobacteria phage vB_EcoM-VR7]
 gi|313151548|gb|ADR32604.1| deoxycytidylate deaminase [Enterobacteria phage vB_EcoM-VR7]
          Length = 193

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 9/53 (16%)

Query: 54  HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           HAE+ A+      G    GAT YVTL PC      P CA+ I + GI+++V C
Sbjct: 104 HAELNAILFAARMGSSIEGATMYVTLSPC------PDCAKAISQSGIKKLVYC 150


>gi|115388491|ref|XP_001211751.1| cytosine deaminase [Aspergillus terreus NIH2624]
 gi|114195835|gb|EAU37535.1| cytosine deaminase [Aspergillus terreus NIH2624]
          Length = 148

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 37/82 (45%), Gaps = 14/82 (17%)

Query: 29  PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG----EEARGATAYVTLEPCS 80
           P  A L+ KDG ++GRG    V       HAE+ ALE +G        GAT Y TL PC 
Sbjct: 24  PIGAALVSKDGKILGRGHNMRVQKGSATLHAEMAALENSGRLPASAYAGATMYTTLSPCD 83

Query: 81  HYGRSPPCAQFIIECGIRRVVV 102
                  C    I   I RVV+
Sbjct: 84  M------CTGACILYKINRVVI 99


>gi|110801187|ref|YP_695768.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens ATCC 13124]
 gi|168215286|ref|ZP_02640911.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens CPE str. F4969]
 gi|110675834|gb|ABG84821.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens ATCC 13124]
 gi|170713327|gb|EDT25509.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens CPE str. F4969]
          Length = 166

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 37/127 (29%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAY-GGCP------- 53
           S+D  FM  AL  ++      S +P+    AC++  D  ++G G   +  GC        
Sbjct: 10  SWDEYFMGVALISAK-----RSKDPNTQVGACIVDNDNKIVGIGYNGFPKGCSDDDLPWG 64

Query: 54  --------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                         HAE+ A L   G+  +    Y TL PC+       CA+ II+ GI 
Sbjct: 65  NKGDFLETKYPYACHAELNAILNSTGKNVKNCRVYATLFPCNE------CAKAIIQAGIT 118

Query: 99  RVVVCVD 105
            V+   D
Sbjct: 119 EVIYLSD 125


>gi|260654860|ref|ZP_05860348.1| tRNA-specific adenosine deaminase [Jonquetella anthropi E3_33 E1]
 gi|260630362|gb|EEX48556.1| tRNA-specific adenosine deaminase [Jonquetella anthropi E3_33 E1]
          Length = 166

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 56/137 (40%), Gaps = 20/137 (14%)

Query: 29  PSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA-----GEEARGATAYVTLEPC 79
           P  A ++ + G +IGRG            HAE+ AL EA     G    G + +VTLEPC
Sbjct: 19  PVGAVVVDEKGNIIGRGYNLRAALHDPTAHAEIVALREAAQALGGWNLSGCSLFVTLEPC 78

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEG 134
                 P CA  +++  I RVV    D      G          L+ +  + + +M  E 
Sbjct: 79  ------PMCAGALVQARIARVVFGCRDERAGACGSLYSILRDGRLNHRCDVAEGLMADEC 132

Query: 135 KIFLHAYLTRQVEKRSH 151
           +  L ++     EK+  
Sbjct: 133 RSLLQSFFLAAREKKRQ 149


>gi|299115986|emb|CBN75987.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 284

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 38/127 (29%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYG-GCP-------- 53
           +D  FMS A     +   + S +PS    AC++ +D  ++G G   +  GC         
Sbjct: 128 WDDYFMSVA-----FLSAMRSKDPSTQVGACIVNEDKRIVGIGYNGFPMGCSDDDLPWAR 182

Query: 54  --------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                         HAE+ A L +   + +G   YV L PC+       CA+ II+ GIR
Sbjct: 183 QADDELDTKYPYVCHAEMNAILNKNSADVKGCLIYVALFPCNE------CAKLIIQSGIR 236

Query: 99  RVVVCVD 105
            VV   D
Sbjct: 237 EVVYLSD 243


>gi|296195104|ref|XP_002745234.1| PREDICTED: deoxycytidylate deaminase-like [Callithrix jacchus]
          Length = 178

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 10/72 (13%)

Query: 47  TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           T Y    HAE+ A + +   + +G T YV L PC+       CA+ II+ GIR V+   D
Sbjct: 77  TKYPYVCHAELNAIMNKNSTDVKGCTMYVALFPCNE------CAKLIIQAGIREVIFMSD 130

Query: 106 ---DPDVRVSGR 114
              D D   + R
Sbjct: 131 KYHDSDEATAAR 142


>gi|229828779|ref|ZP_04454848.1| hypothetical protein GCWU000342_00853 [Shuttleworthia satelles DSM
           14600]
 gi|229793373|gb|EEP29487.1| hypothetical protein GCWU000342_00853 [Shuttleworthia satelles DSM
           14600]
          Length = 154

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 17/121 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEE 66
           M  A+R +R    +      + C+I ++G +I RG       +    HAE+ A+++A  +
Sbjct: 1   MKEAIRQARKAEAIEEV--PIGCVIEREGKIIARGYNRRNIDHSVLKHAEITAIQKACRK 58

Query: 67  A-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                    T YVTLEPC        CA  I++  I RVV+   +P    +G  +  L  
Sbjct: 59  LGDWRLEDCTLYVTLEPCQM------CAGAIVQARIPRVVIGAMNPKAGSAGSVINLLQM 112

Query: 122 K 122
           +
Sbjct: 113 R 113


>gi|228989231|ref|ZP_04149225.1| hypothetical protein bpmyx0001_110 [Bacillus pseudomycoides DSM
           12442]
 gi|228995414|ref|ZP_04155085.1| hypothetical protein bmyco0003_200 [Bacillus mycoides Rock3-17]
 gi|229003028|ref|ZP_04160886.1| hypothetical protein bmyco0002_210 [Bacillus mycoides Rock1-4]
 gi|228758228|gb|EEM07415.1| hypothetical protein bmyco0002_210 [Bacillus mycoides Rock1-4]
 gi|228764340|gb|EEM13216.1| hypothetical protein bmyco0003_200 [Bacillus mycoides Rock3-17]
 gi|228770506|gb|EEM19076.1| hypothetical protein bpmyx0001_110 [Bacillus pseudomycoides DSM
           12442]
          Length = 165

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 16/99 (16%)

Query: 54  HAEVQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+ A++EA ++        AT YVTLEPC      P CA  I+   ++RVV    DP 
Sbjct: 53  HAELLAIDEACKKLGTWRLENATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPK 106

Query: 109 VRVSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
              +G  +  L+ +       +V  +ME E  + L  + 
Sbjct: 107 GGCAGTLMNLLTDERFNHQCEVVSGVMEEECGMLLTNFF 145


>gi|150395640|ref|YP_001326107.1| CMP/dCMP deaminase zinc-binding [Sinorhizobium medicae WSM419]
 gi|150027155|gb|ABR59272.1| CMP/dCMP deaminase zinc-binding [Sinorhizobium medicae WSM419]
          Length = 149

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 54/127 (42%), Gaps = 25/127 (19%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG--------CPHAEVQA 59
           A FM AAL+ +R           +  +IV +G V    V A G           HAE++A
Sbjct: 5   APFMQAALQEARKAAARGEV--PIGAVIVHEGEV----VAAAGNRTRELNDITAHAEIEA 58

Query: 60  LEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           +  A     GE   GA  YVTLEPC+       CA  I    IRR+    +DP       
Sbjct: 59  IRMAATAIGGERLSGADLYVTLEPCTM------CAAAISFARIRRLYYGAEDPKGGAVDN 112

Query: 115 GLQWLSQ 121
           G+++ S 
Sbjct: 113 GVRFYSS 119


>gi|18310048|ref|NP_561982.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens str. 13]
 gi|18144727|dbj|BAB80772.1| deoxycytidylate deaminase [Clostridium perfringens str. 13]
          Length = 166

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 37/127 (29%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAY-GGCP------- 53
           S+D  FM  AL  ++      S +P+    AC++  D  ++G G   +  GC        
Sbjct: 10  SWDEYFMGVALISAK-----RSKDPNTQVGACIVDNDNKIVGIGYNGFPKGCSDDDLPWG 64

Query: 54  --------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                         HAE+ A L   G+  +    Y TL PC+       CA+ II+ GI 
Sbjct: 65  NKGDFLETKYPYACHAELNAILNSTGKNVKNCRVYATLFPCNE------CAKAIIQAGIT 118

Query: 99  RVVVCVD 105
            V+   D
Sbjct: 119 EVIYLSD 125


>gi|291460249|ref|ZP_06599639.1| putative deoxycytidylate deaminase [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291417196|gb|EFE90915.1| putative deoxycytidylate deaminase [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 166

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 59/145 (40%), Gaps = 44/145 (30%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAY-GGCP------- 53
           S++  FM  A   +R      S +PS    AC++ +D  ++  G   +  GC        
Sbjct: 12  SWEEYFMGVAEMSAR-----RSKDPSTQVGACIVSRDNKILSMGYNGFPRGCSDDLFPWT 66

Query: 54  -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                            HAE+ A L   G    GA  YVTL PC+       CA+ +I+ 
Sbjct: 67  KIHVSDDPYNAKYFYSTHAELNAILNYRGGSLEGAKLYVTLFPCNE------CAKALIQA 120

Query: 96  GIRRVVV----CVDDPDVRVSGRGL 116
           GI+ +V       D P++R S R L
Sbjct: 121 GIKTLVYREDKYADTPELRASRRML 145


>gi|332973009|gb|EGK10948.1| cytidine/deoxycytidylate deaminase [Psychrobacter sp. 1501(2011)]
          Length = 207

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 24/160 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D + M AAL  ++   G +     V  ++V++G +IG G    +       HAE+ AL  
Sbjct: 53  DVKCMQAALELAQQ--GASKEEVPVGAVLVQEGNIIGEGFNQPILTCDPTAHAEIVALRS 110

Query: 63  AG---EEAR---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           A    E  R     T YVTLEPC+       C   +I   + R+V    +P   + G  L
Sbjct: 111 ACSALENYRLPANTTLYVTLEPCTM------CLGALIHARLSRLVFATQEPRAGMVGSQL 164

Query: 117 Q-----WLSQKGIIVDRMMESEGKIFLHAYL-TRQVEKRS 150
                 + + K  +   +++++ +  L ++   R+ +K++
Sbjct: 165 NLVEMDFYNHKIAVNYGLLQADSQQILKSFFKARRTKKKN 204


>gi|296157007|ref|ZP_06839844.1| bifunctional deaminase-reductase domain protein [Burkholderia sp.
           Ch1-1]
 gi|295892893|gb|EFG72674.1| bifunctional deaminase-reductase domain protein [Burkholderia sp.
           Ch1-1]
          Length = 225

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 15/117 (12%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVI-IVTEN--DDPVLALAFRKKNINIIYC----DCRD 274
           I +DP  +++  S    TAL + VI ++TE   DD +  L    ++I + Y        D
Sbjct: 84  ISIDPQGRVAWKSN---TALKSHVIEVLTEQVADDYLAYL----QSIGVSYVFGGKTGID 136

Query: 275 LKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           L K++  L    GV  L+VEGG+ V+ +F+N+ LVD + +    +V G    PS  E
Sbjct: 137 LDKVVQTLARELGVKKLIVEGGSHVSGAFVNAGLVDEVSVLILPLVDGRSAHPSSFE 193


>gi|238021048|ref|ZP_04601474.1| hypothetical protein GCWU000324_00945 [Kingella oralis ATCC 51147]
 gi|237868028|gb|EEP69034.1| hypothetical protein GCWU000324_00945 [Kingella oralis ATCC 51147]
          Length = 238

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 16/99 (16%)

Query: 54  HAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+QAL  AG+            YV+LEPC+       CA  +I+  + RVV    +P 
Sbjct: 142 HAEIQALAAAGQVLGNYRLNECDVYVSLEPCAM------CASAMIQARVARVVFAAHEPK 195

Query: 109 VRVSGRGL-----QWLSQKGIIVDRMMESEGKIFLHAYL 142
              +G  L       L+Q   ++  ++  E K  L A+ 
Sbjct: 196 TGAAGSVLNLFSNNQLNQHTAMLGGLLADEAKQQLQAFF 234


>gi|299820898|ref|ZP_07052787.1| tRNA-specific adenosine deaminase [Listeria grayi DSM 20601]
 gi|299817919|gb|EFI85154.1| tRNA-specific adenosine deaminase [Listeria grayi DSM 20601]
          Length = 173

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 17/113 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65
           FM  A++ +R    L      +  ++V D  +IGRG     T      HAE+ A++ A +
Sbjct: 19  FMEEAIKEARKAQALGEV--PIGAVVVLDNEIIGRGHNLRETTQNAITHAEILAIQAACQ 76

Query: 66  EARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                    A  YVTLEPC      P C+  I+   +++V     DP    +G
Sbjct: 77  NRESWRLSEAEIYVTLEPC------PMCSGAILLSRLKKVYYGAPDPKAGTAG 123


>gi|189502659|ref|YP_001958376.1| hypothetical protein Aasi_1340 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189498100|gb|ACE06647.1| hypothetical protein Aasi_1340 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 160

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 14/92 (15%)

Query: 50  GGCP---HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           GGC    HAE  A+  A        GAT Y+TL PC       PCA+ I   GI+RVV  
Sbjct: 68  GGCSLAIHAEQNAILYALSNQAAVTGATLYITLSPCL------PCARIIFTVGIKRVVYV 121

Query: 104 VDDPDVRVSGR--GLQWLSQKGIIVDRMMESE 133
                 +   +  GL++L   G+ V+   +S 
Sbjct: 122 QSYAAYKGLSKEEGLEFLDSFGVKVEAYQQSN 153


>gi|226366259|ref|YP_002784042.1| hypothetical protein ROP_68500 [Rhodococcus opacus B4]
 gi|226244749|dbj|BAH55097.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 262

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 83/201 (41%), Gaps = 31/201 (15%)

Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMI---GMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
           L+AY       R  I +    S D  +   G++G    P    + +     LR  +D +L
Sbjct: 32  LYAYPAET--PRPWIRVNFVSSIDGAVSVDGVSGALGTPADALVFET----LRELADVVL 85

Query: 195 VGIGTVLADD-------PELTCR--LNGLQEHSPMRII-----LDPHFKLSLDSKIIKTA 240
           VG GTV A++        E   R   +G+ E  P+ ++     LDPH +L  D+++    
Sbjct: 86  VGAGTVRAENYGGARIGAEGRGRRVASGMPEVPPIAVVSARAHLDPHARLFTDTEV---- 141

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLVEGGAAV 298
             AP+++   + DP            I+      +  + L+  L   G+  +L EGG ++
Sbjct: 142 --APIVVTCADADPARIRDLAAAGARIVTAGEVQITSEGLIAALDDLGLRRVLCEGGPSL 199

Query: 299 AHSFINSRLVDSIILYRSQIV 319
               I    VD + L  + ++
Sbjct: 200 FGQLIADDSVDEVCLTTAPVL 220


>gi|27467245|ref|NP_763882.1| Cu binding protein (Mn oxidation [Staphylococcus epidermidis ATCC
           12228]
 gi|27314788|gb|AAO03924.1|AE016745_23 Cu binding protein (Mn oxidation [Staphylococcus epidermidis ATCC
           12228]
 gi|329734672|gb|EGG70979.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Staphylococcus epidermidis VCU028]
          Length = 168

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 54/134 (40%), Gaps = 20/134 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           +  +IVK+G VI R      T      HAE  A+E A E          T YVTLEPC  
Sbjct: 26  IGAVIVKEGQVIARAHNLRETLQQPTAHAEHIAIERASEVVGSWRLEECTLYVTLEPCVM 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGKI 136
                 CA  II   I +VV    DP    SG  +  L Q     +  +   ++E E   
Sbjct: 86  ------CAGTIIMSRIPKVVYGATDPKGGCSGSLMNLLEQPQFNHRATVEKGILEEECAE 139

Query: 137 FLHAYLTRQVEKRS 150
            L ++     EK+ 
Sbjct: 140 LLRSFFKEIREKKK 153


>gi|329729486|gb|EGG65889.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Staphylococcus epidermidis VCU144]
          Length = 168

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 54/134 (40%), Gaps = 20/134 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           +  +IVK+G VI R      T      HAE  A+E A E          T YVTLEPC  
Sbjct: 26  IGAVIVKEGQVIARAHNLRETLQQPTAHAEHIAIERASEVVGSWRLEECTLYVTLEPCVM 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGKI 136
                 CA  II   I +VV    DP    SG  +  L Q     +  +   ++E E   
Sbjct: 86  ------CAGTIIMSRIPKVVYGATDPKGGCSGSLMNLLEQPQFNHRATVEKGILEEECAE 139

Query: 137 FLHAYLTRQVEKRS 150
            L ++     EK+ 
Sbjct: 140 LLRSFFKEIREKKK 153


>gi|329928171|ref|ZP_08282117.1| guanine deaminase [Paenibacillus sp. HGF5]
 gi|328938048|gb|EGG34447.1| guanine deaminase [Paenibacillus sp. HGF5]
          Length = 188

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 9/55 (16%)

Query: 34  LIVKDGIVIGRG---VTAYGG-CPHAEVQALEEA-----GEEARGATAYVTLEPC 79
           ++VKDG VIGRG   VTA      HAEVQA+ EA       + +G T Y + EPC
Sbjct: 61  IVVKDGQVIGRGRNLVTALNDPTAHAEVQAIREACLHLEDFQLKGCTIYTSCEPC 115


>gi|89092520|ref|ZP_01165473.1| putative cytosine deaminase [Oceanospirillum sp. MED92]
 gi|89083032|gb|EAR62251.1| putative cytosine deaminase [Oceanospirillum sp. MED92]
          Length = 188

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 19/102 (18%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR---- 68
           AAL    + VG    +    CL V    V  +G  + G   HAE+  L++   EAR    
Sbjct: 39  AALEEGNYGVGAVLLDRQGECLAVGSNQVFSQGFNSAG---HAEMNLLDDF--EARYDDY 93

Query: 69  ----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               G T  V+LEPC      P C   I+  GI RV+  V+D
Sbjct: 94  PDRAGLTLLVSLEPC------PMCTARILAAGIGRVIYLVED 129


>gi|270264772|ref|ZP_06193037.1| hypothetical protein SOD_i01890 [Serratia odorifera 4Rx13]
 gi|270041455|gb|EFA14554.1| hypothetical protein SOD_i01890 [Serratia odorifera 4Rx13]
          Length = 168

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  L+V D  VIG G    +  +    HAE+ AL + G   +  R   AT YVTLEPC  
Sbjct: 28  VGALLVLDNQVIGEGWNRPIGRHDPTAHAEIMALRQGGAVLQNYRLLNATLYVTLEPCVM 87

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  ++   IRR+V    D     +G  +  L   G+
Sbjct: 88  ------CAGAMVHSRIRRLVYGAADVKTGAAGSLVDILRHPGM 124


>gi|228469636|ref|ZP_04054616.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
           uenonis 60-3]
 gi|228308829|gb|EEK17530.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
           uenonis 60-3]
          Length = 162

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 58/144 (40%), Gaps = 40/144 (27%)

Query: 6   FDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            D R+    LR +R W          V  LIV + ++I  G   Y G P           
Sbjct: 19  LDRRY----LRMARIWAENSYCQRRQVGALIVHNQMIISDG---YNGTPSGFENVCEDDE 71

Query: 54  --------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  A+ +   +G    GAT Y+T  PC        CA+ II+  IRRVV 
Sbjct: 72  GITKPYVLHAEANAITKVAASGNNCTGATIYITASPCLE------CAKLIIQSRIRRVVY 125

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIV 126
                  R++  GL+ L + G+ V
Sbjct: 126 ---GEQYRLTD-GLELLKRAGVEV 145


>gi|261407450|ref|YP_003243691.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus sp.
          Y412MC10]
 gi|261283913|gb|ACX65884.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus sp.
          Y412MC10]
          Length = 159

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 9/55 (16%)

Query: 34 LIVKDGIVIGRG---VTAYGG-CPHAEVQALEEA-----GEEARGATAYVTLEPC 79
          ++VKDG VIGRG   VTA      HAEVQA+ EA       + +G T Y + EPC
Sbjct: 32 IVVKDGQVIGRGRNLVTALNDPTAHAEVQAIREACLHLEDFQLKGCTIYTSCEPC 86


>gi|258510212|ref|YP_003183646.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257476938|gb|ACV57257.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 151

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 31/127 (24%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVTA--YG-------GCP----------HAEVQALEEA-- 63
           T T   V C++V+D  +I  G     +G       GC           HAE  AL +   
Sbjct: 26  TCTRLQVGCVVVRDKRIIASGYNGSIHGDEHCVDVGCKVVDGHCVRAIHAEQNALLQCAR 85

Query: 64  -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
            G  A GA  YVT  PC        C + +I+ GIRRV     + + R     ++ LS+ 
Sbjct: 86  FGIAAEGADLYVTHTPC------LTCTKSLIQAGIRRVFY---EFEYRPDPYAMELLSKA 136

Query: 123 GIIVDRM 129
           G++V+++
Sbjct: 137 GVVVEQV 143


>gi|168207992|ref|ZP_02633997.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens E str. JGS1987]
 gi|168210758|ref|ZP_02636383.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens B str. ATCC 3626]
 gi|168217464|ref|ZP_02643089.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens NCTC 8239]
 gi|169342382|ref|ZP_02863448.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens C str. JGS1495]
 gi|182626202|ref|ZP_02953960.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens D str. JGS1721]
 gi|169299502|gb|EDS81566.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens C str. JGS1495]
 gi|170660714|gb|EDT13397.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens E str. JGS1987]
 gi|170711173|gb|EDT23355.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens B str. ATCC 3626]
 gi|177908466|gb|EDT70999.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens D str. JGS1721]
 gi|182380416|gb|EDT77895.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens NCTC 8239]
          Length = 166

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 37/127 (29%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAY-GGCP------- 53
           S+D  FM  AL  ++      S +P+    AC++  D  ++G G   +  GC        
Sbjct: 10  SWDEYFMGVALISAK-----RSKDPNTQVGACIVDNDNKIVGIGYNGFPKGCSDDDLPWG 64

Query: 54  --------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                         HAE+ A L   G+  +    Y TL PC+       CA+ II+ GI 
Sbjct: 65  NKGDFLETKYPYACHAELNAILNSTGKNVKNCRVYATLFPCNE------CAKAIIQAGIT 118

Query: 99  RVVVCVD 105
            V+   D
Sbjct: 119 EVIYLSD 125


>gi|310639569|ref|YP_003944327.1| cmp/dcmp deaminase zinc-binding protein [Paenibacillus polymyxa
           SC2]
 gi|309244519|gb|ADO54086.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus polymyxa
           SC2]
          Length = 165

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 17/101 (16%)

Query: 31  VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEARGATA------YVTLEPCS 80
           +  +IVKD  +IGRG     T      HAE+ A+ +A E   GA        YVTLEPC 
Sbjct: 28  IGAVIVKDNEIIGRGYNLRETDTDPTAHAEMVAIRQASEHL-GAWRLLDCRLYVTLEPC- 85

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                P CA  I++  +  ++    DP    +G  +  L +
Sbjct: 86  -----PMCAGAIVQSRVPHLIYGTTDPKAGCAGTLMNLLQE 121


>gi|295099508|emb|CBK88597.1| Deoxycytidylate deaminase [Eubacterium cylindroides T2-87]
          Length = 164

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 36/124 (29%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAY-GGCP----- 53
           V S+D  FMS A   ++      S +PS    AC++     V+G G   +  GC      
Sbjct: 6   VLSWDEYFMSMAHLSAK-----RSKDPSTQVGACIVNSQKRVVGLGYNGFPKGCDDNEFP 60

Query: 54  ----------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                           HAE+ A+  + ++  G T YV+L PC+       CA+ II+ GI
Sbjct: 61  WARDGEFLDTKYPYVVHAELNAILNSIQDLNGCTIYVSLFPCNE------CAKAIIQSGI 114

Query: 98  RRVV 101
           + VV
Sbjct: 115 KCVV 118


>gi|257437839|ref|ZP_05613594.1| putative deoxycytidylate deaminase [Faecalibacterium prausnitzii
           A2-165]
 gi|257199499|gb|EEU97783.1| putative deoxycytidylate deaminase [Faecalibacterium prausnitzii
           A2-165]
          Length = 168

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 10/72 (13%)

Query: 47  TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           T Y    HAE+ A L  A    +GA  YVTL PC+       CA+ II+ GI  VV   D
Sbjct: 79  TKYMYVCHAELNAILNSAHNNLKGARVYVTLFPCNE------CAKAIIQSGISEVVYYGD 132

Query: 106 ---DPDVRVSGR 114
              D D  V+ R
Sbjct: 133 KYHDSDSSVAAR 144


>gi|254173880|ref|ZP_04880551.1| carbon-monoxide dehydrogenase, catalytic subunit [Thermococcus sp.
           AM4]
 gi|214032129|gb|EEB72960.1| carbon-monoxide dehydrogenase, catalytic subunit [Thermococcus sp.
           AM4]
          Length = 632

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 3/108 (2%)

Query: 34  LIVKDGIVIGRGVTAYGGCPHA--EVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQF 91
           LI +D +V+G G  +           +A++ AG   +     + + PC H G    C++ 
Sbjct: 469 LIKRDVLVVGTGCWSIAAAMEGLMSPKAVDLAGPGLKKICEALNIPPCLHMGSCVDCSRI 528

Query: 92  IIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
           +I  G     + VD  D+  +G   +W+S+K + +     + G +F H
Sbjct: 529 LIALGALADALGVDISDLPAAGSAPEWMSEKAVSIGTYFVASG-VFTH 575


>gi|162447679|ref|YP_001620811.1| deoxycytidylate deaminase [Acholeplasma laidlawii PG-8A]
 gi|161985786|gb|ABX81435.1| deoxycytidylate deaminase [Acholeplasma laidlawii PG-8A]
          Length = 158

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 42/129 (32%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53
           S+D  FM  A + S     L S +P+    AC+I  D  ++  G   Y G P        
Sbjct: 8   SWDQYFMGVA-KLS----ALRSKDPNTQVGACIINPDRRIVAIG---YNGLPMGLSDDED 59

Query: 54  -----------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                            HAE  A+  A    + AT YVTL PC+       C + +++ G
Sbjct: 60  FWQKNEDYSKSKYAYVVHAEANAILNATTSLKDATLYVTLFPCNE------CMKLLVQAG 113

Query: 97  IRRVVVCVD 105
           ++ +V   D
Sbjct: 114 VKEIVYMSD 122


>gi|149248448|ref|XP_001528611.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146448565|gb|EDK42953.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 271

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 18/121 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57
           P  S   +FM+ AL F  +   L +  P VAC++ +   +I  G         G  HAE 
Sbjct: 3   PDLSQHFKFMAVAL-FVGYKALLKNETP-VACVVTRGCQIISIGYNHTNITLNGTKHAEF 60

Query: 58  QALEEAGE--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV-CVDDPDVRVSGR 114
            AL    E  + +  T YVT+EPC        CA ++ + G++ V+  C +D   R  G 
Sbjct: 61  IALGRLKEPVDYKNLTLYVTVEPCIM------CASYLRQLGLKNVIYGCGND---RFGGA 111

Query: 115 G 115
           G
Sbjct: 112 G 112


>gi|291526381|emb|CBK91968.1| Deoxycytidylate deaminase [Eubacterium rectale DSM 17629]
 gi|291526826|emb|CBK92412.1| Deoxycytidylate deaminase [Eubacterium rectale M104/1]
          Length = 161

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 35/125 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYG-GCP------- 53
           S+D  FM  A+       G+ S +P+    AC++  +  ++  G   +  GC        
Sbjct: 12  SWDEYFMGIAML-----SGMRSKDPNTQVGACIVDPEHKILSMGYNGFPLGCSDDEFTWA 66

Query: 54  ------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                       H+E+ A L   G    GAT YVTL PC+       CA+ II+ GIR V
Sbjct: 67  REGEDNKYFYSTHSELNAILNYRGGSLEGATIYVTLFPCNE------CAKAIIQSGIREV 120

Query: 101 VVCVD 105
           V   D
Sbjct: 121 VYDCD 125


>gi|50555826|ref|XP_505321.1| YALI0F12199p [Yarrowia lipolytica]
 gi|49651191|emb|CAG78128.1| YALI0F12199p [Yarrowia lipolytica]
          Length = 605

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 11/91 (12%)

Query: 29  PSVACL---IVKDGIVIGRGVT-AYGGCPHAEVQALEE------AGEEARGATAYVTLEP 78
           PS  C+   +VKDG V+  G +    G  HAE  ALE+        +       Y T+EP
Sbjct: 475 PSAFCVGAVLVKDGQVLETGFSRELPGNTHAEQCALEKYFAKNNVSDVPENTVIYTTMEP 534

Query: 79  CSH-YGRSPPCAQFIIECGIRRVVVCVDDPD 108
           CS     + PC   I+   I+ V V V +PD
Sbjct: 535 CSERLSGNLPCVDRILNSSIKTVFVGVLEPD 565


>gi|291545680|emb|CBL18788.1| Pyrimidine reductase, riboflavin biosynthesis [Ruminococcus sp.
           SR1/5]
          Length = 116

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 265 INIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
           +  IYC    D  DLKKL+T L  RG+ S+L+EGG  +  S + + +V  +  + +  + 
Sbjct: 3   VETIYCPDEKDQIDLKKLMTDLGNRGIDSILLEGGGTLNDSALRAGIVKEVQAFVAPKLF 62

Query: 321 GEGGIPSPLE 330
           G     +P+E
Sbjct: 63  GGVAGKTPVE 72


>gi|227510688|ref|ZP_03940737.1| possible guanine deaminase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227189809|gb|EEI69876.1| possible guanine deaminase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 157

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 46/110 (41%), Gaps = 17/110 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           D +FM  AL        L    P +  +I +DG +IGRG         G  HAE+ A+EE
Sbjct: 6   DEKFMKMAL-IEAQKAYLIGEVP-IGAVITQDGQIIGRGHNLREHLNDGVAHAEIMAIEE 63

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           A    R         YVT+EPC        C+  I+   I RVV    D 
Sbjct: 64  ACRYLRSWRLVDCELYVTIEPC------LMCSGAIVNSRIDRVVFGARDK 107


>gi|115725150|ref|XP_781375.2| PREDICTED: similar to MGC81193 protein [Strongylocentrotus
           purpuratus]
 gi|115958553|ref|XP_001190940.1| PREDICTED: similar to MGC81193 protein [Strongylocentrotus
           purpuratus]
          Length = 205

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 7/60 (11%)

Query: 47  TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           T Y    HAE+ A + +   + +G T YV L PC+       CA+ II+ GIR++V   D
Sbjct: 129 TKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNE------CAKVIIQSGIRKIVFLSD 182


>gi|294340450|emb|CAZ88831.1| tRNA-specific adenosine deaminase [Thiomonas sp. 3As]
          Length = 187

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 66/155 (42%), Gaps = 33/155 (21%)

Query: 7   DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
           D  FM  AL  ++  W +G       V  +IVKDG VI  G    +  +    HAE+ A+
Sbjct: 12  DRAFMRLALDQAQNAWLLGEVP----VGAVIVKDGKVIATGYNRPIGDHDPTAHAEIVAI 67

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A            T YVTLEPC+       CA  ++     RVV    DP    +G  
Sbjct: 68  RQAAHLLGNYRLPECTLYVTLEPCAM------CAMALLHARFARVVFGARDPKTGAAGS- 120

Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
                    +VD  + +E ++  H  +T ++E+ +
Sbjct: 121 ---------VVD--LFAEPRLNHHCDITPEIEQEA 144


>gi|313886183|ref|ZP_07819913.1| dCMP deaminase [Porphyromonas asaccharolytica PR426713P-I]
 gi|332299700|ref|YP_004441621.1| CMP/dCMP deaminase zinc-binding protein [Porphyromonas
           asaccharolytica DSM 20707]
 gi|312924362|gb|EFR35141.1| dCMP deaminase [Porphyromonas asaccharolytica PR426713P-I]
 gi|332176763|gb|AEE12453.1| CMP/dCMP deaminase zinc-binding protein [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 161

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 47/119 (39%), Gaps = 36/119 (30%)

Query: 6   FDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            D R+    LR +R W          V  LIV + ++I  G   Y G P           
Sbjct: 18  LDRRY----LRMARIWAENSYCRRRQVGALIVHNQMIISDG---YNGTPSGFENVCEDDE 70

Query: 54  --------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                   HAE  A+ +   +G    GAT Y+T  PC        CA+ II+  IRRVV
Sbjct: 71  GITKPYVLHAEANAITKVAASGNNCTGATIYITASPCLE------CAKLIIQSRIRRVV 123


>gi|302342017|ref|YP_003806546.1| CMP/dCMP deaminase zinc-binding protein [Desulfarculus baarsii DSM
           2075]
 gi|301638630|gb|ADK83952.1| CMP/dCMP deaminase zinc-binding protein [Desulfarculus baarsii DSM
           2075]
          Length = 171

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 11/76 (14%)

Query: 54  HAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+  L +A          G+T YV+LEPC      P CA  I+   +RRVV    DP 
Sbjct: 63  HAEMLVLRQAAAAMGNYRLVGSTLYVSLEPC------PMCAGAIVWARVRRVVYGAADPK 116

Query: 109 VRVSGRGLQWLSQKGI 124
               G  L    Q G+
Sbjct: 117 AGALGSALDLSRQPGL 132


>gi|121714253|ref|XP_001274737.1| cytidine and deoxycytidylate deaminase zinc-binding domain protein
           [Aspergillus clavatus NRRL 1]
 gi|119402891|gb|EAW13311.1| cytidine and deoxycytidylate deaminase zinc-binding domain protein
           [Aspergillus clavatus NRRL 1]
          Length = 191

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 52/123 (42%), Gaps = 21/123 (17%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
           V    A FM  AL      + +  T   V C++V+DG +IG G+     +  G  HAE  
Sbjct: 14  VDPTHAYFMKQALLMGEKALEIGET--PVGCVLVRDGQLIGSGMNDTNKSMNGTRHAEFI 71

Query: 59  ALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV-CVDDPDVRVS 112
           A+EE          R    YVT+EPC        CA  + +  IR V   C ++   R  
Sbjct: 72  AIEEMLRSHPRSLLRSTDLYVTVEPCVM------CASALRQYQIRSVYFGCANE---RFG 122

Query: 113 GRG 115
           G G
Sbjct: 123 GTG 125


>gi|163938030|ref|YP_001642914.1| CMP/dCMP deaminase zinc-binding [Bacillus weihenstephanensis KBAB4]
 gi|163860227|gb|ABY41286.1| CMP/dCMP deaminase zinc-binding [Bacillus weihenstephanensis KBAB4]
          Length = 164

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 55/125 (44%), Gaps = 17/125 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ A++E
Sbjct: 4   DIYFMQLAIEEAKKAEAIQEV--PIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDE 61

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++        AT YVTLEPC      P CA  I+   I+RVV    DP    +G  + 
Sbjct: 62  ACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRIKRVVYGASDPKGGCAGTLMN 115

Query: 118 WLSQK 122
            L+ +
Sbjct: 116 LLTDE 120


>gi|302390668|ref|YP_003826489.1| tRNA-adenosine deaminase [Thermosediminibacter oceani DSM 16646]
 gi|302201296|gb|ADL08866.1| tRNA-adenosine deaminase [Thermosediminibacter oceani DSM 16646]
          Length = 152

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 47/113 (41%), Gaps = 17/113 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE 65
           FM  AL+ +R           V  +I  +G +I R       +     HAEV A++ A E
Sbjct: 9   FMREALKEAR--KAFEQDEVPVGAVIAYEGSIIARAHNLRERSQDATAHAEVLAIKAACE 66

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                   G + YVTLEPC      P CA  II   + RVV    DP    +G
Sbjct: 67  AMGTWRLTGCSLYVTLEPC------PMCAGAIILARLDRVVFGAPDPKAGAAG 113


>gi|251788710|ref|YP_003003431.1| CMP/dCMP deaminase zinc-binding [Dickeya zeae Ech1591]
 gi|247537331|gb|ACT05952.1| CMP/dCMP deaminase zinc-binding [Dickeya zeae Ech1591]
          Length = 168

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V+ G VIG G    +  +    HAE+ AL++ G+  +       T Y+TLEPC  
Sbjct: 29  VGAVLVQGGNVIGEGWNRPIGRHDPTAHAEIMALQQGGQTLQNYRLLDTTLYITLEPCVM 88

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  +I   I R+V    D     +G  +  L   GI
Sbjct: 89  ------CAGAMIHSRISRLVYGAADAKTGAAGSLVDILRHPGI 125


>gi|254490420|ref|ZP_05103607.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Methylophaga thiooxidans DMS010]
 gi|224464386|gb|EEF80648.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Methylophaga thiooxydans DMS010]
          Length = 149

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           V  +IV +  +IG G    ++A     HAE+ AL +A +        GA  Y+TLEPC+ 
Sbjct: 26  VGAVIVLNNEIIGEGWNQPISANDATAHAEIIALRQACQLMNNYRLPGADMYITLEPCAM 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 CA  ++   I +VV    +P    +G
Sbjct: 86  ------CAGALVHARINKVVYATAEPKTGAAG 111


>gi|81298931|ref|YP_399139.1| cytosine/adenosine deaminase-like [Synechococcus elongatus PCC
           7942]
 gi|81167812|gb|ABB56152.1| Cytosine/adenosine deaminases-like [Synechococcus elongatus PCC
           7942]
          Length = 161

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 15/104 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D RFM  A+  SR    +  T     C+I ++G +I  G    +T      HAE+ A+ +
Sbjct: 6   DERFMRRAIALSRQAGLIDCTGGPFGCVITRNGEIIAEGFNQVLTERDPTWHAEIAAIRQ 65

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           A +  +     G T Y + EPC      P CA  +    + R+V
Sbjct: 66  ACQHLQTVDLSGCTLYTSAEPC------PMCAAAVYWAKLDRLV 103


>gi|296532454|ref|ZP_06895178.1| deoxycytidylate deaminase [Roseomonas cervicalis ATCC 49957]
 gi|296267229|gb|EFH13130.1| deoxycytidylate deaminase [Roseomonas cervicalis ATCC 49957]
          Length = 201

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 54  HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
           HAE  AL  AG  ARG  AYV  +P  +      CA  +I+ G++RVV   
Sbjct: 82  HAEQNALLHAGHNARGCDAYVVGKPVCNT-----CATLLIQAGVKRVVAAA 127


>gi|238922541|ref|YP_002936054.1| dCMP deaminase [Eubacterium rectale ATCC 33656]
 gi|238874213|gb|ACR73920.1| dCMP deaminase [Eubacterium rectale ATCC 33656]
          Length = 161

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 35/125 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYG-GCP------- 53
           S+D  FM  A+       G+ S +P+    AC++  +  ++  G   +  GC        
Sbjct: 12  SWDEYFMGIAML-----SGMRSKDPNTQVGACIVDPEHKILSMGYNGFPLGCSDDEFTWA 66

Query: 54  ------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                       H+E+ A L   G    GAT YVTL PC+       CA+ II+ GIR V
Sbjct: 67  REGEDNKYFYSTHSELNAILNYRGGSLEGATIYVTLFPCNE------CAKAIIQSGIREV 120

Query: 101 VVCVD 105
           V   D
Sbjct: 121 VYDCD 125


>gi|312891108|ref|ZP_07750631.1| CMP/dCMP deaminase zinc-binding [Mucilaginibacter paludis DSM
          18603]
 gi|311296416|gb|EFQ73562.1| CMP/dCMP deaminase zinc-binding [Mucilaginibacter paludis DSM
          18603]
          Length = 159

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 21/93 (22%)

Query: 1  MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG---------VTAYGG 51
          +P  S D  FM  AL+ +R  + L      +  L+V  G +IGRG         V+A   
Sbjct: 10 IPAISPDDFFMKEALKEAR--LALAEDEIPIGALVVCKGQIIGRGHNLTERLNDVSA--- 64

Query: 52 CPHAEVQALEEAGEEARGA-----TAYVTLEPC 79
            HAE+QAL  A     G      T YVT+EPC
Sbjct: 65 --HAEMQALTAATNYTGGKYLPDCTLYVTMEPC 95


>gi|307297235|ref|ZP_07577041.1| CMP/dCMP deaminase zinc-binding [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916495|gb|EFN46877.1| CMP/dCMP deaminase zinc-binding [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 168

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 9/58 (15%)

Query: 54  HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE  A+ +A   G    G+T YVT  PCS       CA+ II  GI+RVV     PD
Sbjct: 98  HAEQNAIAQAAKFGIATNGSTIYVTHRPCS------VCARLIINAGIKRVVFSEGYPD 149


>gi|310790867|gb|EFQ26400.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Glomerella graminicola M1.001]
          Length = 149

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 18/127 (14%)

Query: 29  PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG----EEARGATAYVTLEPCS 80
           P  A L+  DG ++GRG    V       H E  AL  +G    +  +G+T Y TL PC 
Sbjct: 24  PIGAALVSADGKLLGRGHNRRVQMGSAIHHGETDALFNSGRLPGKAYKGSTMYTTLSPCD 83

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
                  C    +  GI RVV+     + R    G  +L Q+G+ V  +  +E K  +  
Sbjct: 84  M------CTGACLLYGISRVVI----GENRTFLGGEAYLKQRGVEVVVLDSAECKALMDK 133

Query: 141 YLTRQVE 147
           ++  + E
Sbjct: 134 FIAEKPE 140


>gi|319793607|ref|YP_004155247.1| cmp/dcmp deaminase zinc-binding protein [Variovorax paradoxus EPS]
 gi|315596070|gb|ADU37136.1| CMP/dCMP deaminase zinc-binding protein [Variovorax paradoxus EPS]
          Length = 368

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 42/93 (45%), Gaps = 17/93 (18%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA------RGATAYVTLEPCS 80
           V  ++VKDG VI  G    V  +    HAE+ AL  AG  A       G   +VTLEPC+
Sbjct: 27  VGAVLVKDGQVIATGRNTPVAQHDPSAHAEINALR-AGASALGNYRLDGCELFVTLEPCA 85

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                  CA  ++   + RVV    DP    +G
Sbjct: 86  M------CAGAMLHSRLARVVFGATDPKTGAAG 112


>gi|293194557|ref|ZP_06610019.1| tRNA-specific adenosine deaminase [Actinomyces odontolyticus F0309]
 gi|292819677|gb|EFF78695.1| tRNA-specific adenosine deaminase [Actinomyces odontolyticus F0309]
          Length = 332

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 45/95 (47%), Gaps = 17/95 (17%)

Query: 29  PSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEEARGA------TAYVTLEP 78
           P  A ++ ++G +IGRG       +    HAE+ AL EAG  ARG       T  VTLEP
Sbjct: 18  PVGAVIVDENGRIIGRGWNCREANHDPAGHAEIVALREAGR-ARGTWRLTGCTLIVTLEP 76

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           C+       CA  I+   I RVV    DP    +G
Sbjct: 77  CTM------CAGAILASRIDRVVFGAWDPKAGAAG 105


>gi|325679150|ref|ZP_08158742.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Ruminococcus albus 8]
 gi|324109155|gb|EGC03379.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Ruminococcus albus 8]
          Length = 159

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 6/59 (10%)

Query: 47  TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           T Y    HAE+ A+  +  + +G+  YV+L PC+       CA+ II+ GI+ V+   D
Sbjct: 71  TKYPFVCHAELNAILNSNHDLKGSRIYVSLFPCNE------CAKAIIQSGIKEVIYTCD 123


>gi|269468375|gb|EEZ80040.1| cytosine/adenosine deaminase [uncultured SUP05 cluster bacterium]
          Length = 156

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 17/142 (11%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI---GRGVTAYGGCPHAEVQAL 60
           SS D ++M  AL  +R+        P  A L+  D ++     + ++      HAE+Q L
Sbjct: 5   SSLDEKWMKIALEQARFAQAKNEV-PVGAILVKNDQLIASAHNQPISNNDPTAHAEIQLL 63

Query: 61  EEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             AG+          T YVTLEPC+       C   +I   + RVV    D    V G  
Sbjct: 64  RVAGKRLNNYRLPNTTLYVTLEPCTM------CLGAMIHARVSRVVFGAYDKKTGVCGSC 117

Query: 116 LQWLSQKGIIVDRMMESEGKIF 137
              ++ K    +  ++++G I 
Sbjct: 118 QDLVTSK--CFNHQLQAQGGIL 137


>gi|253581046|ref|ZP_04858307.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847709|gb|EES75678.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 163

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 41/143 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAY-GGCP------- 53
           S+D  FM  A+       G+ S +P+    AC++ +D  ++  G   +  GC        
Sbjct: 12  SWDEYFMGVAMM-----SGMRSKDPNSQVGACIVSEDNKILSMGYNGFPKGCSDDEFPWA 66

Query: 54  --------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                         H+E+ A L   G    GA  YV+L PC+       CA+ II+ GI+
Sbjct: 67  REGDSLHTKYFYVTHSELNAILNYRGGSLEGAKLYVSLFPCNE------CAKAIIQAGIK 120

Query: 99  RVVV----CVDDPDVRVSGRGLQ 117
            +V       D P V  S R L 
Sbjct: 121 TIVYDCDKYADTPAVIASKRMLD 143


>gi|183601156|ref|ZP_02962649.1| hypothetical protein PROSTU_04786 [Providencia stuartii ATCC 25827]
 gi|188019501|gb|EDU57541.1| hypothetical protein PROSTU_04786 [Providencia stuartii ATCC 25827]
          Length = 154

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 13/122 (10%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           D +F+  A+  ++ +V   +       +IV+DG V+  GV           HAE+ AL +
Sbjct: 3   DKQFLQQAISLAKENV--KAGGRPFGAVIVRDGAVVATGVNQMLELNDPTAHAELMALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIE---CGIRRVVVCVDDPDVRVSGRGLQWL 119
           AGE  +       LE C  Y    PC   +      GI R+V    + D    G   + +
Sbjct: 61  AGETLK----RTRLEDCVVYASGQPCPMCLAAMRMAGISRIVYAYSNQDAEPFGLSTEAI 116

Query: 120 SQ 121
           +Q
Sbjct: 117 AQ 118


>gi|227355681|ref|ZP_03840074.1| deaminase-reductase domain protein [Proteus mirabilis ATCC 29906]
 gi|227164000|gb|EEI48897.1| deaminase-reductase domain protein [Proteus mirabilis ATCC 29906]
          Length = 190

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 2/53 (3%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           +L+ ++T L  +G   L ++GG  V  SF+N  L+D +I+ R  I++G GG P
Sbjct: 108 ELQDIITELNAKGFNELYIDGGVTV-QSFLNEDLIDQMIITRFPILLG-GGTP 158


>gi|311694940|gb|ADP97813.1| cytidine/deoxycytidylate deaminase family protein [marine bacterium
           HP15]
          Length = 167

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 49/110 (44%), Gaps = 17/110 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGC---PHAEVQALEE 62
           D R+M+ AL+ +            V  ++V DG  IG G  A   GC    HAE++AL +
Sbjct: 8   DERWMNRALQLA--GEAAAKGEVPVGAVVVLDGKEIGAGFNAPISGCDPTAHAEIRALRD 65

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           A           AT YVTLEPC+       C   I+   I R+V    +P
Sbjct: 66  AAARVGNYRLPDATLYVTLEPCTM------CVGAIVHGRISRLVYGAREP 109


>gi|304317923|ref|YP_003853068.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779425|gb|ADL69984.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 147

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 9/58 (15%)

Query: 54  HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE  A+ +A   G   + AT YV+  PCS       CA+ II  GI+RVV   D PD
Sbjct: 77  HAEQNAIIQAALNGVSTKDATIYVSASPCSM------CAKMIINAGIKRVVYEGDYPD 128


>gi|148643446|ref|YP_001273959.1| cytosine deaminase [Methanobrevibacter smithii ATCC 35061]
 gi|261349766|ref|ZP_05975183.1| cytosine deaminase [Methanobrevibacter smithii DSM 2374]
 gi|148552463|gb|ABQ87591.1| cytosine deaminase [Methanobrevibacter smithii ATCC 35061]
 gi|288860550|gb|EFC92848.1| cytosine deaminase [Methanobrevibacter smithii DSM 2374]
          Length = 158

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 22/164 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  F++ AL+ ++    L      +  ++VKDG +I RG    +       HAE+  +E 
Sbjct: 4   DTYFINEALKEAK--KSLAEGGIPIGAVLVKDGKIISRGHNRLIQNDSVILHAEIDTIEN 61

Query: 63  AG----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           AG    E+   +  Y TL PC      P C+  I+   I +V++  +      +  G + 
Sbjct: 62  AGRLNHEDYLQSVLYTTLSPC------PMCSGAILLYNIPKVIIGEN-----TTLMGAEC 110

Query: 119 LSQK-GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           L +K G+ V  +   E K     Y+    E  ++   K+  S D
Sbjct: 111 LLEKNGVEVVVLNNLECKKLFEKYVEENPESWNNELSKVGNSTD 154


>gi|78777832|ref|YP_394147.1| cytosine deaminase [Sulfurimonas denitrificans DSM 1251]
 gi|78498372|gb|ABB44912.1| Cytosine deaminase [Sulfurimonas denitrificans DSM 1251]
          Length = 145

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 10/80 (12%)

Query: 9  RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64
          +F+ AA+  ++   GL      +  ++V DG ++GRG    V       HAE+  LE AG
Sbjct: 3  KFLQAAIEEAK--KGLKEGGIPIGSVLVIDGKIVGRGHNRRVQDSSAILHAEMDCLENAG 60

Query: 65 E----EARGATAYVTLEPCS 80
               E + A  Y TL PCS
Sbjct: 61 RMAASEYKKAILYSTLSPCS 80


>gi|124266938|ref|YP_001020942.1| tRNA-adenosine deaminase [Methylibium petroleiphilum PM1]
 gi|124259713|gb|ABM94707.1| tRNA-adenosine deaminase [Methylibium petroleiphilum PM1]
          Length = 205

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 29/143 (20%)

Query: 1   MPVSSFDARFMSAALRFS------RWHVGLTSTNPSVACLIVK--DGI--VIGRG----V 46
           M  S+  AR   AA+R +       W VG       V  +IV+  DG+  V+  G    +
Sbjct: 1   MSDSAEQARKDEAAMRLALDQAQNAWLVG----EVPVGAVIVREVDGVHQVVATGYNRPI 56

Query: 47  TAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           T +    HAE+ AL  A +            YVTLEPC+       CA  ++    +RVV
Sbjct: 57  TTHDPTAHAEIVALRHAAQLLGNYRLPDCELYVTLEPCAM------CAMALVHARFKRVV 110

Query: 102 VCVDDPDVRVSGRGLQWLSQKGI 124
               DP    +G  +   +Q+ +
Sbjct: 111 YAAADPKTGAAGSVIDLFAQRQL 133


>gi|308066929|ref|YP_003868534.1| hypothetical protein PPE_00098 [Paenibacillus polymyxa E681]
 gi|305856208|gb|ADM67996.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 163

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 17/101 (16%)

Query: 31  VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEARGATA------YVTLEPCS 80
           +  +IVKD  +IGRG     T      HAE+ A+ +A E   GA        YVTLEPC 
Sbjct: 25  IGAVIVKDNEIIGRGYNLRETDADPTAHAEMVAIRQASEHL-GAWRLLDCRLYVTLEPC- 82

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                P CA  I++  +  ++    DP    +G  +  L +
Sbjct: 83  -----PMCAGAIVQSRVPHLIYGTTDPKAGCAGTLMNLLQE 118


>gi|300865868|ref|ZP_07110611.1| tRNA-adenosine deaminase [Oscillatoria sp. PCC 6506]
 gi|300336131|emb|CBN55769.1| tRNA-adenosine deaminase [Oscillatoria sp. PCC 6506]
          Length = 169

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57
           P+     ++MS A++ ++   G     P  A ++   G +I +G            HAE+
Sbjct: 13  PIYLTHCQWMSRAIKLAQ-EAGEAGEVPVGAAIVDSQGKLIAQGQNRRERDCDPTAHAEI 71

Query: 58  QALEEAG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
            AL  AG           T YVTLEPC      P CA  I++  I  +V  VDDP
Sbjct: 72  LALRGAGIALQNWHLNACTLYVTLEPC------PMCAGAIVQARIGLLVYGVDDP 120


>gi|159028687|emb|CAO88158.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 143

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 15/92 (16%)

Query: 29  PSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
           P  A ++ K G +I +G       +    HAE+ A+  A +        G T YVTLEPC
Sbjct: 18  PVGAVIVDKQGHLIAQGANCKEKHHDPTAHAEILAIRAASQVLGNWHLNGCTLYVTLEPC 77

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
                 P CA  II+  +  +V   DDP   V
Sbjct: 78  ------PMCAGAIIQARLGLLVYGADDPKTGV 103


>gi|260886275|ref|ZP_05897538.1| putative deoxycytidylate deaminase [Selenomonas sputigena ATCC
           35185]
 gi|330839740|ref|YP_004414320.1| dCMP deaminase [Selenomonas sputigena ATCC 35185]
 gi|260863994|gb|EEX78494.1| putative deoxycytidylate deaminase [Selenomonas sputigena ATCC
           35185]
 gi|329747504|gb|AEC00861.1| dCMP deaminase [Selenomonas sputigena ATCC 35185]
          Length = 163

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 42/157 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53
           S+D  FM  AL FS++     S +P     AC++ +D  ++G G   Y G P        
Sbjct: 4   SWDEYFMGIAL-FSKYR----SKDPHTQVGACIVNEDKHIVGVG---YNGMPNGCSDAEF 55

Query: 54  -----------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                            HAE+ A+  A    +G   Y +L PC+       C + II+ G
Sbjct: 56  PWGSTGEFGDKKYAYVVHAELNAILNASTSLKGCRIYTSLFPCNE------CCKAIIQSG 109

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
           I+ V+   D      S R  + +     +  R +E++
Sbjct: 110 IKEVIYLSDKYAATDSTRASKRMFAAAGVHYRRLETD 146


>gi|255320509|ref|ZP_05361690.1| tRNA-specific adenosine deaminase [Acinetobacter radioresistens
           SK82]
 gi|262378401|ref|ZP_06071558.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|255302481|gb|EET81717.1| tRNA-specific adenosine deaminase [Acinetobacter radioresistens
           SK82]
 gi|262299686|gb|EEY87598.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 163

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 19/128 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           M    FD  +    L + +  +  +     V  +IV +  VIG G    +  +    HAE
Sbjct: 1   MQQHEFDDHYW-MQLAYEQAALAASKGEVPVGAVIVSNNQVIGVGHNQPIFKHDPTAHAE 59

Query: 57  VQALEEAGEEARG------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV- 109
           +QAL EA +  +        T YVTLEPC+       C   +I   ++RVV    +P   
Sbjct: 60  IQALREACQLTQNYRLPDDTTLYVTLEPCTM------CVGALIHARVQRVVFGATEPKAG 113

Query: 110 -RVSGRGL 116
             VS R L
Sbjct: 114 SLVSARRL 121


>gi|302691412|ref|XP_003035385.1| hypothetical protein SCHCODRAFT_51868 [Schizophyllum commune H4-8]
 gi|300109081|gb|EFJ00483.1| hypothetical protein SCHCODRAFT_51868 [Schizophyllum commune H4-8]
          Length = 163

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 68  RGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG--I 124
           R    Y TLEPCS       PCA  +I  G+RR  + V +PD  V   G + L   G  I
Sbjct: 86  RQVDVYTTLEPCSIRTSGLAPCADALIAAGVRRCFIGVGEPDDFVQCEGARKLKDAGVEI 145

Query: 125 IVDRMMESE 133
           +  + ME E
Sbjct: 146 VWLKGMEEE 154


>gi|282899006|ref|ZP_06306988.1| Cytidine/deoxycytidylate deaminase, zinc-binding region protein
           [Cylindrospermopsis raciborskii CS-505]
 gi|281196146|gb|EFA71061.1| Cytidine/deoxycytidylate deaminase, zinc-binding region protein
           [Cylindrospermopsis raciborskii CS-505]
          Length = 154

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 18/107 (16%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
           MS AL+ ++  +   +    V C+IV   G +IG+G            HAE+ A+  A  
Sbjct: 1   MSEALKLAQ--IAGDAGEVPVGCVIVNPQGNLIGQGENRKQRDQDPTAHAEIIAIRSAAR 58

Query: 66  EARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
             +       T YVTLEPC      P CA  II   ++ +V  VDDP
Sbjct: 59  TLQNWHLDQCTLYVTLEPC------PMCAGAIIHARLQTLVYAVDDP 99


>gi|261868753|ref|YP_003256675.1| tRNA-specific adenosine deaminase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261414085|gb|ACX83456.1| tRNA-specific adenosine deaminase [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 175

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 16/112 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59
           +  D +FM  AL  +     L    P  A L+ + G +IG G    +       HAE+  
Sbjct: 6   TQLDEKFMHHALMLAGKAEALGEI-PVGAVLVSEAGEIIGEGWNLSIIHSDPTAHAEIVT 64

Query: 60  LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           L + G++ +       T YVTLEPC+       CA  I+   I+R+V    D
Sbjct: 65  LRQGGQKLQNYRLLNTTLYVTLEPCT------MCAGAILHSRIKRLVFGAAD 110


>gi|46199478|ref|YP_005145.1| putative cell cycle protein mesJ-like protein [Thermus thermophilus
           HB27]
 gi|61217297|sp|Q72IF6|TILS_THET2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|46197104|gb|AAS81518.1| putative cell cycle protein mesJ-like protein [Thermus thermophilus
           HB27]
          Length = 507

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 19/26 (73%)

Query: 54  HAEVQALEEAGEEARGATAYVTLEPC 79
           HAE+  L EAG EARG   YVTLEPC
Sbjct: 420 HAEMLLLREAGPEARGGRLYVTLEPC 445


>gi|118483842|gb|ABK93812.1| unknown [Populus trichocarpa]
          Length = 229

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 32/100 (32%)

Query: 32  ACLIVKDGIVIGRGVTAYG-GCP------------------------HAEVQA-LEEAGE 65
           ACL+ ++GI++G G   +  GC                         HAEV A L     
Sbjct: 95  ACLVSQNGIILGIGYNGFPRGCSDDKLPWAKKSKSGDPLETKYPYVCHAEVNAILNTNHA 154

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
            A G   YVT+ PC+       CA+ II+ G+  V+  V+
Sbjct: 155 SAAGQKLYVTMFPCNE------CAKIIIQSGVSEVIYFVE 188


>gi|55981511|ref|YP_144808.1| cell cycle protein MesJ [Thermus thermophilus HB8]
 gi|61217197|sp|Q5SI38|TILS_THET8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|55772924|dbj|BAD71365.1| probable cell cycle protein MesJ [Thermus thermophilus HB8]
          Length = 507

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 19/26 (73%)

Query: 54  HAEVQALEEAGEEARGATAYVTLEPC 79
           HAE+  L EAG EARG   YVTLEPC
Sbjct: 420 HAEMLLLREAGPEARGGRLYVTLEPC 445


>gi|259907686|ref|YP_002648042.1| tRNA-specific adenosine deaminase [Erwinia pyrifoliae Ep1/96]
 gi|224963308|emb|CAX54793.1| tRNA-specific adenosine deaminase [Erwinia pyrifoliae Ep1/96]
 gi|310764806|gb|ADP09756.1| tRNA-specific adenosine deaminase [Erwinia sp. Ejp617]
          Length = 166

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 53/126 (42%), Gaps = 21/126 (16%)

Query: 10  FMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA 63
           +M  ALR +R  W  G       V  ++V DG  IG G    +  +    HAE+ AL + 
Sbjct: 9   WMRHALRLARRAWDEG----EVPVGAVLVLDGQAIGEGWNRPIGQHDPTAHAEMMALRQG 64

Query: 64  G---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   E  R    T YVTLEPC        CA  +I   + R+V    D     +G  L  
Sbjct: 65  GKVIENYRLLDTTLYVTLEPCV------MCAGAMIHGRVGRLVYGARDAKTGAAGSLLDV 118

Query: 119 LSQKGI 124
           L   G+
Sbjct: 119 LGHAGM 124


>gi|224136175|ref|XP_002322258.1| predicted protein [Populus trichocarpa]
 gi|222869254|gb|EEF06385.1| predicted protein [Populus trichocarpa]
          Length = 229

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 32/100 (32%)

Query: 32  ACLIVKDGIVIGRGVTAYG-GCP------------------------HAEVQA-LEEAGE 65
           ACL+ ++GI++G G   +  GC                         HAEV A L     
Sbjct: 95  ACLVSQNGIILGIGYNGFPRGCSDDKLPWAKKSKSGDPLETKYPYVCHAEVNAILNTNHA 154

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
            A G   YVT+ PC+       CA+ II+ G+  V+  V+
Sbjct: 155 SAAGQKLYVTMFPCNE------CAKIIIQSGVSEVIYFVE 188


>gi|118444046|ref|YP_879269.1| cytidine/deoxycytidylate deaminase family protein, pytative
           [Clostridium novyi NT]
 gi|118134502|gb|ABK61546.1| cytidine/deoxycytidylate deaminase family protein, pytative
           [Clostridium novyi NT]
          Length = 147

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 17/117 (14%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALE 61
            D +FM  AL  ++  +        V  +IVK+G VI        T      HAE+ A++
Sbjct: 1   MDKKFMEIALDEAK--IAALKDEVPVGAVIVKNGEVIASAHNLRETLNDPTAHAEILAIK 58

Query: 62  EAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           +A    +         YVTLEPC      P C+  I++  IR++ +   DP +   G
Sbjct: 59  KASSILKNWRLNECEMYVTLEPC------PMCSGAILQSRIRKLYIGTIDPSMGCCG 109


>gi|325679436|ref|ZP_08159020.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Ruminococcus albus 8]
 gi|324108864|gb|EGC03096.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Ruminococcus albus 8]
          Length = 159

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 6/59 (10%)

Query: 47  TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           T Y    HAE+ A+  +  + +G+  YV+L PC+       CA+ II+ GI+ V+   D
Sbjct: 71  TKYPFVCHAELNAVLNSNHDLKGSRIYVSLFPCNE------CAKAIIQSGIKEVIYTCD 123


>gi|260221448|emb|CBA30021.1| hypothetical protein Csp_A15070 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 408

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 49/116 (42%), Gaps = 17/116 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI--GRGVTAYGGCP--HAEVQALEE 62
           D  FMS AL        L    P V  +IVK G VI  GR  T     P  HAEV AL+E
Sbjct: 7   DEYFMSLALE-QAIEAELAGEVP-VGAVIVKGGQVIAKGRNRTIEWNDPSAHAEVVALKE 64

Query: 63  AG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A          G   +VTLEPC+       C+  I    I RVV    DP    +G
Sbjct: 65  AARACGTHRLSGLQLFVTLEPCA------MCSGAIFHGRIERVVFGAADPKTGCAG 114


>gi|169825638|ref|YP_001695796.1| hypothetical protein Bsph_0024 [Lysinibacillus sphaericus C3-41]
 gi|168990126|gb|ACA37666.1| Hypothetical yaaJ protein [Lysinibacillus sphaericus C3-41]
          Length = 170

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 17/115 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           M +   D  FM  AL  ++    L      +  ++V DG +I R      T      HAE
Sbjct: 1   MDIFETDRLFMKQALEEAKKAAILGEV--PIGAVLVYDGEIIARAHNLRETTQNATTHAE 58

Query: 57  VQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           +  ++EA ++         T YVTLEPC      P CA  I++  + RVV    D
Sbjct: 59  LMVIQEACQKIGSWRLEKTTLYVTLEPC------PMCAGAILQSRVPRVVYGARD 107


>gi|226328060|ref|ZP_03803578.1| hypothetical protein PROPEN_01951 [Proteus penneri ATCC 35198]
 gi|225203764|gb|EEG86118.1| hypothetical protein PROPEN_01951 [Proteus penneri ATCC 35198]
          Length = 176

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V D  +I +G    +       HAE+ AL + G+  +      AT Y+TLEPC  
Sbjct: 29  VGAVLVVDNKIIAKGWNHSIIDNDPTAHAEIMALRKGGKHLQNYRLLDATLYITLEPCV- 87

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  I+   ++RVV    D     +G  +  L   G+
Sbjct: 88  -----MCAGAIVHSRVKRVVYGASDLKTGAAGSFIDILQHPGM 125


>gi|329902676|ref|ZP_08273230.1| tRNA-specific adenosine-34 deaminase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548648|gb|EGF33298.1| tRNA-specific adenosine-34 deaminase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 161

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 50/126 (39%), Gaps = 21/126 (16%)

Query: 7   DARFMSAAL--RFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
           D+ FM  A+    + W +G       V  ++VKDG VI  G    +  +    HAE+ AL
Sbjct: 3   DSVFMRLAMDQAHNAWALG----EVPVGAVLVKDGQVIATGFNQSIGTHDPTAHAEIMAL 58

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
                        G   YVTLEPC+       CA  ++   + RVV    DP     G  
Sbjct: 59  RAGASLLGNYRLPGCELYVTLEPCAM------CAGAMMHARLARVVYGASDPKTGCCGSV 112

Query: 116 LQWLSQ 121
           L    Q
Sbjct: 113 LDLFGQ 118


>gi|89255310|ref|NP_660001.2| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
           [Rhizobium etli CFN 42]
 gi|218674568|ref|ZP_03524237.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
           [Rhizobium etli GR56]
 gi|89213264|gb|AAM55014.2| probable 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
           [Rhizobium etli CFN 42]
 gi|327191679|gb|EGE58686.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
           [Rhizobium etli CNPAF512]
          Length = 233

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 5/114 (4%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLL 279
           +I+D   +L  D   I+ A L  V+  ++ DD  LA    +  ++ I    D  DLK  L
Sbjct: 90  VIVDKDGRLRWDKSDIEGAHLV-VLTGSDVDDAYLA-GLTQAGVSYIVSEKDGVDLKNAL 147

Query: 280 TILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
            +L    GV  L++EGGA     F+ + LVD + L     + G+   P+  E G
Sbjct: 148 DLLGTEFGVKRLMLEGGAQTNGHFLKAGLVDEVSLVIFPAIGGKSNTPAIFEGG 201


>gi|62185341|ref|YP_220126.1| putative cytidine/deoxycytidylate deaminase family protein
           [Chlamydophila abortus S26/3]
 gi|62148408|emb|CAH64175.1| putative cytidine/deoxycytidylate deaminase family protein
           [Chlamydophila abortus S26/3]
          Length = 157

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 51/123 (41%), Gaps = 20/123 (16%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
           D  FM+ AL+ +R           V C+IVKD  +I RG            HAE+  +  
Sbjct: 6   DIFFMNQALKEAR--QAYDEDEVPVGCVIVKDNKIIARGHNTTEKLQDPTAHAEILCIGA 63

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +            Y TLEPC        CA  I    IRR+V     PD+R+ G G  
Sbjct: 64  AAQYLENWRLVDTVLYCTLEPCLM------CAGAIQLARIRRIVWAA--PDLRL-GAGGS 114

Query: 118 WLS 120
           WL+
Sbjct: 115 WLN 117


>gi|160900241|ref|YP_001565823.1| CMP/dCMP deaminase [Delftia acidovorans SPH-1]
 gi|160365825|gb|ABX37438.1| CMP/dCMP deaminase zinc-binding [Delftia acidovorans SPH-1]
          Length = 475

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRGVTA--YGGCP--HAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  +IVKDG ++G+G  A    G P  HAEV AL +A            T YVTLEPC+ 
Sbjct: 55  VGAVIVKDGAIVGQGRNAPVAQGDPTAHAEVLALRDAAARLGNYRLDDCTLYVTLEPCTM 114

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 C+  ++   + RVV    +P    +G
Sbjct: 115 ------CSGAMLHARLGRVVYGAAEPRTGAAG 140


>gi|282600107|ref|ZP_05973017.2| tRNA-specific adenosine deaminase [Providencia rustigianii DSM
           4541]
 gi|282566416|gb|EFB71951.1| tRNA-specific adenosine deaminase [Providencia rustigianii DSM
           4541]
          Length = 176

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  L+VKD  +I  G    +  +    HAE+  L++AG+  +       T YVTLEPC  
Sbjct: 38  VGALLVKDNQLIATGWNHSIEQHDPTAHAEIITLQQAGKILKNYRLLDTTLYVTLEPC-- 95

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  +I   I RVV    D      G  +  + Q G+
Sbjct: 96  ----IMCAGAMIHSRIGRVVYGAKDFKTGACGSFINIMGQAGL 134


>gi|321478485|gb|EFX89442.1| hypothetical protein DAPPUDRAFT_190827 [Daphnia pulex]
          Length = 217

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 47  TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           T Y    HAE+ A + +   + RG T YV L PC+       CA+ II+ GI++VV   D
Sbjct: 119 TKYMYVCHAEMNAIMNKNTADLRGCTLYVALFPCNE------CAKLIIQAGIKQVVYMSD 172

Query: 106 DPDVRVSGRGLQWL-SQKGIIVDRMMESEGKIFL 138
               + S    + + S  G+   + +    KI +
Sbjct: 173 KHKNKPSTEASKMMFSMAGVKCQQFVPKNSKIVI 206


>gi|291548233|emb|CBL21341.1| Deoxycytidylate deaminase [Ruminococcus sp. SR1/5]
          Length = 164

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 37/127 (29%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAY-GGCP------- 53
           S+D  FM  A+       G+ S +P     AC++ +D  ++  G   +  GC        
Sbjct: 13  SWDEYFMGVAML-----SGMRSKDPHSQVGACIVSEDNKILSMGYNGFPKGCSDDEFPWG 67

Query: 54  --------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                         H+E+ A L   G    GA  YV+L PC+       CA+ II+ GIR
Sbjct: 68  REGDPLDTKYLYVTHSELNAILNYRGGSLEGAKLYVSLFPCNE------CAKAIIQAGIR 121

Query: 99  RVVVCVD 105
            +V   D
Sbjct: 122 TIVYDCD 128


>gi|301111742|ref|XP_002904950.1| deoxycytidylate deaminase [Phytophthora infestans T30-4]
 gi|262095280|gb|EEY53332.1| deoxycytidylate deaminase [Phytophthora infestans T30-4]
          Length = 252

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 40/130 (30%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAY-GGCP------- 53
           S+D  FMS A         + S +PS    AC++  +  ++G G   +  GC        
Sbjct: 94  SWDDYFMSVAFL-----SAMRSKDPSTQVGACIVNPERKIVGIGYNGFPNGCGDDELPWA 148

Query: 54  -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                            HAE+ A L +   + +G + YV L PC+       CA+ II+ 
Sbjct: 149 RETATNSPLDTKYPYVCHAEMNAILNKNSTDVKGCSIYVALFPCNE------CAKLIIQS 202

Query: 96  GIRRVVVCVD 105
           GI RVV   D
Sbjct: 203 GIARVVYFSD 212


>gi|190894029|ref|YP_001984323.1| probable 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
           [Rhizobium etli CIAT 652]
 gi|190699690|gb|ACE93773.1| probable 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
           [Rhizobium etli CIAT 652]
          Length = 233

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 5/114 (4%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLL 279
           +I+D   +L  D   I+ A L  V+  ++ DD  LA    +  ++ I    D  DLK  L
Sbjct: 90  VIVDKDGRLRWDKSDIEGAHLV-VLTGSDVDDAYLA-GLTQAGVSYIVSEKDGVDLKNAL 147

Query: 280 TILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
            +L    GV  L++EGGA     F+ + LVD + L     + G+   P+  E G
Sbjct: 148 DLLGTEFGVKRLMLEGGAQTNGHFLKAGLVDEVSLVIFPAIGGKSSTPAIFEGG 201


>gi|294495182|ref|YP_003541675.1| CMP/dCMP deaminase zinc-binding protein [Methanohalophilus mahii
           DSM 5219]
 gi|292666181|gb|ADE36030.1| CMP/dCMP deaminase zinc-binding protein [Methanohalophilus mahii
           DSM 5219]
          Length = 147

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 20/146 (13%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64
           +FM  A+  +    G       +  ++V+DG++IGRG    V       HAE+  + +AG
Sbjct: 3   QFMKEAI--NEAMAGRDKGGIPIGSVLVRDGMIIGRGHNLRVQNDDPLAHAEISCMRDAG 60

Query: 65  EEARGATA--YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-WLSQ 121
                A    Y TL PC        CA  +++ GI++VVV   +     +  G Q +L  
Sbjct: 61  RIGSYADTVLYSTLMPCY------LCAGAVVQFGIKKVVVGESE-----TFEGAQDFLRS 109

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVE 147
           KG+ V  +  SE K  +  ++    E
Sbjct: 110 KGVEVVDLGLSECKTLMKEFIREYPE 135


>gi|229039926|ref|ZP_04189692.1| hypothetical protein bcere0027_100 [Bacillus cereus AH676]
 gi|228727416|gb|EEL78607.1| hypothetical protein bcere0027_100 [Bacillus cereus AH676]
          Length = 166

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 20/136 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  +IV DG VI        T      HAE+ A+++A ++        AT YVTLEPC  
Sbjct: 28  IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDDACKKLGTWRLEDATLYVTLEPC-- 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P CA  I+   ++RVV    DP    +G  +  L+ +       +V  ++E E   
Sbjct: 86  ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVSGVLEEECGT 141

Query: 137 FLHAYLTRQVEKRSHI 152
            L  +     +KR  I
Sbjct: 142 LLTNFFRELRKKRKAI 157


>gi|229083334|ref|ZP_04215694.1| hypothetical protein bcere0022_180 [Bacillus cereus Rock3-44]
 gi|228699981|gb|EEL52606.1| hypothetical protein bcere0022_180 [Bacillus cereus Rock3-44]
          Length = 165

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 20/126 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  +IV DG V+        T      HAE+ A++EA ++        AT YVTLEPC  
Sbjct: 26  IGAVIVLDGEVVSVAHNLRETEQRSIAHAELLAIDEACKKLGTWRLENATLYVTLEPC-- 83

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P CA  I+   ++RVV    DP    +G  +  L+ +       +V  +ME E   
Sbjct: 84  ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVSGVMEEECGT 139

Query: 137 FLHAYL 142
            L  + 
Sbjct: 140 LLTNFF 145


>gi|225181888|ref|ZP_03735323.1| CMP/dCMP deaminase zinc-binding [Dethiobacter alkaliphilus AHT 1]
 gi|225167402|gb|EEG76218.1| CMP/dCMP deaminase zinc-binding [Dethiobacter alkaliphilus AHT 1]
          Length = 158

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 17/109 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           D  FM  AL+ +   +        +  ++V+DG +I R             HAE+  L E
Sbjct: 3   DQDFMREALKEA--QLAFEKGEIPIGAVLVRDGNIIARDHNRREELDDPTAHAEILVLRE 60

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           AG    G      T YVT+EPC      P CA  +++  + RVV    D
Sbjct: 61  AGRTLGGWRLPNTTLYVTIEPC------PMCAGGLVQARVARVVYGAAD 103


>gi|262370390|ref|ZP_06063716.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262314732|gb|EEY95773.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 166

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 32/167 (19%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQ 58
           V   D+ +M  AL   +  +  +     V  +IV    +IG G    +T      HAEVQ
Sbjct: 4   VLKIDSEWMQLALE--QAAIAASKGEVPVGAVIVSQNKIIGSGFNAPITLNDPTAHAEVQ 61

Query: 59  ALEEAGEEARG------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV--R 110
           AL +A +  +       A  YVTLEPC+       C   ++   + +VV    +P     
Sbjct: 62  ALRDACQNTQNYRLPDDAVMYVTLEPCTM------CVGALVHARVSKVVFGATEPKAGSL 115

Query: 111 VSGRGL--------QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           +S R L        Q+L + G + ++  +       H +  R+ +KR
Sbjct: 116 ISARKLFETGYYNHQFLVESGCLHEQCSQQ----LSHFFKMRREQKR 158


>gi|222445686|ref|ZP_03608201.1| hypothetical protein METSMIALI_01327 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435251|gb|EEE42416.1| hypothetical protein METSMIALI_01327 [Methanobrevibacter smithii
           DSM 2375]
          Length = 158

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 22/164 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  F++ AL  ++    L      +  ++VKDG +I RG    +       HAE+  +E 
Sbjct: 4   DTYFINEALNEAK--KSLAEGGIPIGAVLVKDGKIISRGHNRLIQNDSVILHAEIDTIEN 61

Query: 63  AG----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           AG    E+   +  Y TL PC      P C+  I+   I +VV+  +      +  G + 
Sbjct: 62  AGRLNHEDYLQSVLYTTLSPC------PMCSGAILLYNIPKVVIGEN-----TTLMGAEC 110

Query: 119 LSQK-GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           L +K G+ V  +   E K     Y+    E  ++   K+  S D
Sbjct: 111 LLEKNGVEVVVLNNLECKKLFEKYVEENPESWNNELSKVGNSTD 154


>gi|167766023|ref|ZP_02438076.1| hypothetical protein CLOSS21_00515 [Clostridium sp. SS2/1]
 gi|167712103|gb|EDS22682.1| hypothetical protein CLOSS21_00515 [Clostridium sp. SS2/1]
          Length = 161

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 17/123 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           + ++M  A++ ++    +    P + C+IV+D  +I R             HAE+ A+++
Sbjct: 4   EEKYMKEAIKQAK-KAAVIGDVP-IGCVIVEDDKIIARAYNQRNKKKTTLAHAELLAIQK 61

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++         T Y+TLEPC        CA  I++  I +VV+   +P    +G  L 
Sbjct: 62  ASKKVNDWRLEDCTMYITLEPCQM------CAGAIVQARIPKVVIGAMNPKAGCAGSVLN 115

Query: 118 WLS 120
            L 
Sbjct: 116 ILQ 118


>gi|145298514|ref|YP_001141355.1| cytosine/adenosine deaminase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851286|gb|ABO89607.1| cytosine/adenosine deaminase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 199

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 15/115 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI---GRGVTAYGGCPHAEVQALEEA 63
           D R+M  A+  +    G+    P  A L++ D +V     R ++ +  C HAE+ A+  A
Sbjct: 36  DERWMRHAMALAARAEGIGEI-PVGAVLVLGDEVVGEGGNRSISEHDACAHAEIMAIRAA 94

Query: 64  G---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           G   E  R      YVTLEPC        CA  +I   ++RVV    D     +G
Sbjct: 95  GARLENYRLIDTVLYVTLEPCC------MCAGALIHSRVKRVVFGARDLKTGAAG 143


>gi|321254677|ref|XP_003193159.1| hypothetical protein CGB_C9470W [Cryptococcus gattii WM276]
 gi|317459628|gb|ADV21372.1| hypothetical protein CNC00250 [Cryptococcus gattii WM276]
          Length = 1858

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 68   RGATAYVTLEPCSHYGRS-PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            + A  Y TLEPCS+     P CA  ++  G+R V + V++P   V   G++ L   G+ V
Sbjct: 1780 KDAVCYATLEPCSYRTSGGPSCALELVRAGVRAVYLGVEEPPDFVECEGVRILQDGGVRV 1839

Query: 127  DRMM 130
             R +
Sbjct: 1840 VRAV 1843


>gi|297587228|ref|ZP_06945873.1| tRNA-specific adenosine deaminase [Finegoldia magna ATCC 53516]
 gi|297575209|gb|EFH93928.1| tRNA-specific adenosine deaminase [Finegoldia magna ATCC 53516]
          Length = 155

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 11/82 (13%)

Query: 7  DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
          D +FM  A+  ++    +      V C+IVKDG +I +   +         HAE++A+ +
Sbjct: 5  DEKFMMKAIEQAKIAYDMDEV--PVGCVIVKDGEIIAQAYNSVEKDKNATMHAELKAINQ 62

Query: 63 AGE-----EARGATAYVTLEPC 79
          A E            YVTLEPC
Sbjct: 63 ATEFIGNFRLDDCIMYVTLEPC 84


>gi|226503799|ref|NP_001152254.1| deoxycytidylate deaminase [Zea mays]
 gi|195654307|gb|ACG46621.1| deoxycytidylate deaminase [Zea mays]
 gi|223948705|gb|ACN28436.1| unknown [Zea mays]
          Length = 228

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 65/164 (39%), Gaps = 43/164 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYG-GCP------- 53
           S+D  FM+ A   +       S +P+    ACL+ ++GI++G G   +  GC        
Sbjct: 69  SWDDYFMAIAFLSAE-----RSKDPNRQVGACLVSQEGIILGIGYNGFPRGCSDDKLPWA 123

Query: 54  -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                            HAEV A L      A G   YVT+ PC+       CA+ II+ 
Sbjct: 124 KKSASGDPLETKFPYVVHAEVNAILNTNHASAAGQKLYVTMFPCNE------CAKIIIQS 177

Query: 96  GIRRVVVCVD---DPDVRVSGRGLQWLSQKGIIVDRMMESEGKI 136
           G+  V+  V+   D    V     + LS  G+ V +      +I
Sbjct: 178 GVSEVIYFVEKKIDNSAHVYVASHKLLSMAGVKVRKHQPQMAQI 221


>gi|323702624|ref|ZP_08114286.1| CMP/dCMP deaminase zinc-binding protein [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532443|gb|EGB22320.1| CMP/dCMP deaminase zinc-binding protein [Desulfotomaculum
           nigrificans DSM 574]
          Length = 149

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 9/58 (15%)

Query: 54  HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE  AL +A   G   +G+T YVT +PC        CA+ I+  GI++VV   D PD
Sbjct: 77  HAEQNALLQAAVHGIAIQGSTIYVTHQPCV------LCAKMIVNAGIKKVVFAGDYPD 128


>gi|297172082|gb|ADI23064.1| cytosine/adenosine deaminases [uncultured gamma proteobacterium
           HF0770_07M15]
          Length = 150

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 55/135 (40%), Gaps = 25/135 (18%)

Query: 31  VACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEA------RGATAYVTLEPCS 80
           V  ++V++G VI R             HAE+ AL  A E A       G T YVT EPC 
Sbjct: 19  VGAVVVREGAVIARAWNQVELLKDATAHAEMIALT-AAEAAVGDWRLTGCTLYVTKEPC- 76

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGK 135
                P CA  ++ C I RVV    DP    +G  +  L    +     I   +ME + +
Sbjct: 77  -----PMCAGALVHCRIDRVVFGATDPRGGAAGGAMNLLQFPTLNHACDITGGVMEPDCR 131

Query: 136 IFLHAYLTRQVEKRS 150
             L  +     EKR 
Sbjct: 132 NLLQTFFK---EKRK 143


>gi|317403100|gb|EFV83631.1| zinc-binding hydrolase [Achromobacter xylosoxidans C54]
          Length = 163

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 16/121 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57
           P ++ DA FM+ AL  +R    +    P  A ++   G ++GRG    +  +    HAE+
Sbjct: 6   PWTAQDADFMTLALDEARAAYDIGEV-PVGALVVSAQGDILGRGYNRTIIDHDPTAHAEI 64

Query: 58  QALEEAG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL  A    E  R  G T YVTLEPC        C   ++   + RVV    DP     
Sbjct: 65  VALRGAARALENYRLPGITVYVTLEPCVM------CIGAMLHARLARVVFGAYDPKTGAC 118

Query: 113 G 113
           G
Sbjct: 119 G 119


>gi|256823046|ref|YP_003147009.1| CMP/dCMP deaminase zinc-binding [Kangiella koreensis DSM 16069]
 gi|256796585|gb|ACV27241.1| CMP/dCMP deaminase zinc-binding [Kangiella koreensis DSM 16069]
          Length = 159

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 48/127 (37%), Gaps = 17/127 (13%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
           + FD   M  A  F    +        V  ++ KDG +   G       +    HAE+  
Sbjct: 5   TDFDQHCMQRA--FDLASIAEEKGEVPVGAVLAKDGEIKTEGFNQPIFNHDPTAHAEMVV 62

Query: 60  LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           L  AG++         T YVTLEPC+       CA  ++   + RVV    DP    +G 
Sbjct: 63  LRAAGQKLDNYRLVDTTLYVTLEPCAM------CAMAMVHARVSRVVFATTDPRTGAAGS 116

Query: 115 GLQWLSQ 121
            L  L  
Sbjct: 117 VLNILQN 123


>gi|184157936|ref|YP_001846275.1| cytosine/adenosine deaminase [Acinetobacter baumannii ACICU]
 gi|332872773|ref|ZP_08440739.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Acinetobacter baumannii 6014059]
 gi|183209530|gb|ACC56928.1| Cytosine/adenosine deaminase [Acinetobacter baumannii ACICU]
 gi|322508255|gb|ADX03709.1| Putative deaminase [Acinetobacter baumannii 1656-2]
 gi|323517881|gb|ADX92262.1| cytosine/adenosine deaminase [Acinetobacter baumannii TCDC-AB0715]
 gi|332739070|gb|EGJ69931.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Acinetobacter baumannii 6014059]
          Length = 167

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 18/98 (18%)

Query: 31  VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEARG------ATAYVTLEPCS 80
           V  +IV    +IG G  A  G      HAE+QA+  A E  +       AT YVTLEPC+
Sbjct: 28  VGAVIVSQNKLIGAGFNAPIGLSDPTAHAEIQAIRAACESLKNYRLPEDATLYVTLEPCT 87

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDV--RVSGRGL 116
                  C   ++   I+ VV    +P     VS R L
Sbjct: 88  M------CVGALVHARIKHVVFGTTEPKAGSLVSARQL 119


>gi|218290658|ref|ZP_03494749.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218239323|gb|EED06521.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 151

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 31/127 (24%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVTA--YG-------GCP----------HAEVQALEEA-- 63
           T T   V C+IV+D  +I  G     +G       GC           HAE  AL +   
Sbjct: 26  TCTRLQVGCVIVRDKRIIASGYNGSIHGDEHCVDVGCKVVDGHCVRAIHAEQNALLQCAR 85

Query: 64  -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
            G  A GA  YVT  PC        C + +I+ GIRRV     + + R      + LS+ 
Sbjct: 86  FGIAAEGADLYVTHTPC------LTCTKSLIQAGIRRVFY---EFEYRPDPYATELLSKA 136

Query: 123 GIIVDRM 129
           G++V+++
Sbjct: 137 GVVVEQV 143


>gi|229491248|ref|ZP_04385074.1| riboflavin biosynthesis protein RibD domain protein [Rhodococcus
           erythropolis SK121]
 gi|229321787|gb|EEN87582.1| riboflavin biosynthesis protein RibD domain protein [Rhodococcus
           erythropolis SK121]
          Length = 249

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 32/153 (20%), Positives = 65/153 (42%), Gaps = 12/153 (7%)

Query: 180 KNQVHLLRAQSDAILVGIGTVLA---------DDPELTCRLNGLQEHSPMRIILDPHFKL 230
           K+   +LR   D ++VG GT  A         D+       +GL    P+ +++  H  +
Sbjct: 57  KSVFGILRELCDVVVVGAGTARAENYGGVQVSDEARARRTADGLAPVPPI-LVVSAHASI 115

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVT 288
             +S++++   + P+++V  + D     A R     +   D  ++    +   L  R + 
Sbjct: 116 DSESRLLRDTEVPPILVVGRDADSAAISALRSAGAQVEVTDSPNVTSGDIDRALSARKLR 175

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            +L EGG ++    I    VD + +  S  ++G
Sbjct: 176 RVLCEGGPSLFGQLIEDNAVDELCITTSPQLVG 208


>gi|319655047|ref|ZP_08009117.1| cytidine/deoxycytidylate deaminase [Bacillus sp. 2_A_57_CT2]
 gi|317393271|gb|EFV74039.1| cytidine/deoxycytidylate deaminase [Bacillus sp. 2_A_57_CT2]
          Length = 178

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 19/118 (16%)

Query: 1   MPVSSF--DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPH 54
           M  +SF  D  +M  A++ ++   GL      +  +IV +G +I R             H
Sbjct: 1   MRQASFTEDELYMQEAIKEAKLAEGLEEV--PIGAVIVLEGEIIARAHNLREVNQTAIAH 58

Query: 55  AEVQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           AE+ A+++A +         A  YVTLEPC      P C+  II   I++VV    DP
Sbjct: 59  AELLAIDQACKNLGTWRLENAVLYVTLEPC------PMCSGSIILSRIKKVVYGAKDP 110


>gi|317499420|ref|ZP_07957687.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893292|gb|EFV15507.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 161

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 17/123 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           + ++M  A++ ++    +    P + C+IV+D  +I R             HAE+ A+++
Sbjct: 4   EEKYMKEAIKQAK-KAAVIGDVP-IGCVIVEDDKIIARAYNQRNKKKTTLAHAELLAIQK 61

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++         T Y+TLEPC        CA  I++  I +VV+   +P    +G  L 
Sbjct: 62  ASKKVNDWRLEDCTMYITLEPCQM------CAGAIVQARIPKVVIGAMNPKAGCAGSVLN 115

Query: 118 WLS 120
            L 
Sbjct: 116 ILQ 118


>gi|146293740|ref|YP_001184164.1| CMP/dCMP deaminase, zinc-binding [Shewanella putrefaciens CN-32]
 gi|145565430|gb|ABP76365.1| tRNA-adenosine deaminase [Shewanella putrefaciens CN-32]
          Length = 164

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++VKDG  I  G    ++ +    HAE+  L  AG++        AT Y+TLEPC+ 
Sbjct: 24  VGAVLVKDGQQIATGYNLSISQHDPTAHAEILCLRSAGKKLENYRLLDATLYITLEPCAM 83

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 CA  ++   I RVV    D     +G
Sbjct: 84  ------CAGAMVHSRIARVVYGARDEKTGAAG 109


>gi|332528366|ref|ZP_08404366.1| CMP/dCMP deaminase [Hylemonella gracilis ATCC 19624]
 gi|332042237|gb|EGI78563.1| CMP/dCMP deaminase [Hylemonella gracilis ATCC 19624]
          Length = 375

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 11/76 (14%)

Query: 54  HAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+QAL  AG           T YVTLEPC      P CA  ++   ++RVV    DP 
Sbjct: 59  HAEMQALRAAGSVLGNYRLDDCTLYVTLEPC------PMCAGAMLHARLKRVVYGAADPK 112

Query: 109 VRVSGRGLQWLSQKGI 124
              +G  L   + + +
Sbjct: 113 TGAAGSVLDLFAHRQL 128


>gi|300724136|ref|YP_003713453.1| TadA, tRNA -specific adenosine deaminase [Xenorhabdus nematophila
           ATCC 19061]
 gi|297630670|emb|CBJ91335.1| TadA, tRNA-specific adenosine deaminase [Xenorhabdus nematophila
           ATCC 19061]
          Length = 170

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 22/139 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V D  ++  G    +T +    HAE+ AL + G   +       T YVTLEPC  
Sbjct: 35  VGAILVADNEILAEGFNLPITYHDPTAHAEIIALRQGGSRLQNYRLLNTTLYVTLEPCVM 94

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
                 CA  ++   I+R+V    D     +G  +  L   G+     I+  ++  E   
Sbjct: 95  ------CAGAMVHSRIKRLVYGASDMKTGAAGSLIDILRHPGMNHQIEIIGGVLAEECST 148

Query: 137 FLHAYLTRQVEKRSHITLK 155
            L ++  ++ E+  H  LK
Sbjct: 149 MLSSFFKQRREQ--HKALK 165


>gi|73541535|ref|YP_296055.1| tRNA-adenosine deaminase [Ralstonia eutropha JMP134]
 gi|72118948|gb|AAZ61211.1| tRNA-adenosine deaminase [Ralstonia eutropha JMP134]
          Length = 177

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 17/124 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D R++ AA+  +R  +   +    V  ++V +  +I RG    + +     HAE+QAL  
Sbjct: 13  DERYLRAAMDEAR--LAEAAGEVPVGAVVVWNDAIIARGHNLPIKSMDPSAHAEMQALRA 70

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +            YVTLEPC+       C+  I+   +R VV    DP    +G  + 
Sbjct: 71  AAQVLGNYRMPECELYVTLEPCAM------CSGAILHARLRHVVFGASDPKTGAAGSVVN 124

Query: 118 WLSQ 121
              Q
Sbjct: 125 LFEQ 128


>gi|30018294|ref|NP_829925.1| cytosine deaminase [Bacillus cereus ATCC 14579]
 gi|229125538|ref|ZP_04254572.1| hypothetical protein bcere0015_100 [Bacillus cereus BDRD-Cer4]
 gi|29893834|gb|AAP07126.1| Cytosine deaminase [Bacillus cereus ATCC 14579]
 gi|228657922|gb|EEL13726.1| hypothetical protein bcere0015_100 [Bacillus cereus BDRD-Cer4]
          Length = 166

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 20/136 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  +IV DG VI        T      HAE+ A+++A ++        AT YVTLEPC  
Sbjct: 28  IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDDACKKLGTWRLEDATLYVTLEPC-- 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P CA  I+   ++RVV    DP    +G  +  L+ +       +V  ++E E   
Sbjct: 86  ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVSGVLEEECGT 141

Query: 137 FLHAYLTRQVEKRSHI 152
            L  +     +KR  I
Sbjct: 142 LLTNFFRELRKKRKAI 157


>gi|237748387|ref|ZP_04578867.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229379749|gb|EEO29840.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 241

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 4/120 (3%)

Query: 213 GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC-- 270
           G  E + M I++DP  K+   S  I    +  ++++ E+         R+  I+ ++   
Sbjct: 82  GTCETARMCIVMDPKGKIRYSSDRIMGENI--IVVLGESVSQSYLEHLRELGISYLFAGR 139

Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
              DL K L  L   G+  ++++GG  +  SF+ + L+D + L     + G  GIP+  E
Sbjct: 140 HGNDLNKALETLGEFGLRKIMLQGGGIINGSFLKAGLIDELSLLIYPGIDGRAGIPAVFE 199


>gi|195627622|gb|ACG35641.1| deoxycytidylate deaminase [Zea mays]
          Length = 228

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 65/164 (39%), Gaps = 43/164 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYG-GCP------- 53
           S+D  FM+ A   +       S +P+    ACL+ ++GI++G G   +  GC        
Sbjct: 69  SWDDYFMAIAFLSAE-----RSKDPNRQVGACLVSQEGIILGIGYNGFPRGCSDDKLPWA 123

Query: 54  -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                            HAEV A L      A G   YVT+ PC+       CA+ II+ 
Sbjct: 124 KKSASGDPLETKFPYVVHAEVNAILNTNHASAAGQKLYVTMFPCNE------CAKIIIQS 177

Query: 96  GIRRVVVCVD---DPDVRVSGRGLQWLSQKGIIVDRMMESEGKI 136
           G+  V+  V+   D    V     + LS  G+ V +      +I
Sbjct: 178 GVSEVIYFVEKKIDNSAHVYVASHKLLSMAGVKVRKHQPQMAQI 221


>gi|308813003|ref|XP_003083808.1| cytidine/deoxycytidylate deaminase family protein (ISS)
           [Ostreococcus tauri]
 gi|116055690|emb|CAL57775.1| cytidine/deoxycytidylate deaminase family protein (ISS)
           [Ostreococcus tauri]
          Length = 290

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 40/126 (31%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYG-GCP------- 53
           S+D  FMS A   ++      S +P+    AC++ +D +++G G   +  GC        
Sbjct: 99  SWDDYFMSVAFLSAQ-----RSKDPNKQVGACIVGEDKLILGVGYNGFPRGCADSALPWA 153

Query: 54  -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                            HAE+ A + +      G T YVT+ PC+       CA+ II+ 
Sbjct: 154 KKSTNGDELETKYPYVCHAEMNAIMNKNSASVAGGTLYVTMYPCNE------CAKLIIQA 207

Query: 96  GIRRVV 101
           GIR VV
Sbjct: 208 GIREVV 213


>gi|120598186|ref|YP_962760.1| CMP/dCMP deaminase, zinc-binding [Shewanella sp. W3-18-1]
 gi|120558279|gb|ABM24206.1| tRNA-adenosine deaminase [Shewanella sp. W3-18-1]
          Length = 164

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++VKDG  I  G    ++ +    HAE+  L  AG++        AT Y+TLEPC+ 
Sbjct: 24  VGAVLVKDGQQIATGYNLSISQHDPSAHAEILCLRSAGKKLENYRLLDATLYITLEPCAM 83

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 CA  ++   I RVV    D     +G
Sbjct: 84  ------CAGAMVHSRIARVVYGARDEKTGAAG 109


>gi|229142827|ref|ZP_04271271.1| hypothetical protein bcere0012_100 [Bacillus cereus BDRD-ST24]
 gi|229148430|ref|ZP_04276688.1| hypothetical protein bcere0011_100 [Bacillus cereus m1550]
 gi|296500855|ref|YP_003662555.1| cytosine deaminase [Bacillus thuringiensis BMB171]
 gi|228635039|gb|EEK91610.1| hypothetical protein bcere0011_100 [Bacillus cereus m1550]
 gi|228640641|gb|EEK97027.1| hypothetical protein bcere0012_100 [Bacillus cereus BDRD-ST24]
 gi|296321907|gb|ADH04835.1| cytosine deaminase [Bacillus thuringiensis BMB171]
          Length = 166

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 20/136 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  +IV DG VI        T      HAE+ A+++A ++        AT YVTLEPC  
Sbjct: 28  IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDDACKKLGTWRLEDATLYVTLEPC-- 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P CA  I+   ++RVV    DP    +G  +  L+ +       +V  ++E E   
Sbjct: 86  ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVSGVLEEECGT 141

Query: 137 FLHAYLTRQVEKRSHI 152
            L  +     +KR  I
Sbjct: 142 LLTNFFRELRKKRKAI 157


>gi|28895070|ref|NP_801420.1| hypothetical protein SPs0158 [Streptococcus pyogenes SSI-1]
 gi|28810315|dbj|BAC63253.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
          Length = 160

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 9/58 (15%)

Query: 31 VACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEARG-----ATAYVTLEPC 79
          + C+IVKDG +IGRG  A         HAE+ A+ EA            T +VT+EPC
Sbjct: 19 IGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFVTIEPC 76


>gi|261364637|ref|ZP_05977520.1| tRNA-specific adenosine deaminase [Neisseria mucosa ATCC 25996]
 gi|288567233|gb|EFC88793.1| tRNA-specific adenosine deaminase [Neisseria mucosa ATCC 25996]
          Length = 243

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 23/154 (14%)

Query: 4   SSFDAR-FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQ 58
           +SF+   FM AAL  +     +      V  ++V D  +I       V+ +    HAE++
Sbjct: 91  TSFEMETFMRAALVQAEQSARIGEI--PVGAVVVADNQIIAAAHNTCVSDHDISRHAEIR 148

Query: 59  ALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL  AG   +         Y+TLEPC+       CA  II+  +RRV+    +P    +G
Sbjct: 149 ALAVAGAALQNYRLDECDLYITLEPCAM------CASAIIQARVRRVIYGAAEPKTGAAG 202

Query: 114 RGLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
             +       L++   I   ++E E K  L A+ 
Sbjct: 203 SVVNLFANPLLNKHTAIKGGILEDECKDVLQAFF 236


>gi|319941641|ref|ZP_08015965.1| cytosine deaminase [Sutterella wadsworthensis 3_1_45B]
 gi|319804871|gb|EFW01725.1| cytosine deaminase [Sutterella wadsworthensis 3_1_45B]
          Length = 328

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 47/109 (43%), Gaps = 17/109 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG--VTAYGGCP--HAEV----- 57
           D  FM  AL  ++   G+    P V  ++V DG VI RG   T   G P  HAE+     
Sbjct: 163 DRSFMRMALEEAQ-EAGMAGEIP-VGAVVVADGKVIARGGNETLRSGDPTAHAEIVALRA 220

Query: 58  QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
            A   A       T YVTLEPC      P CA  I E   RR+V    D
Sbjct: 221 AAAALANHRLTNTTLYVTLEPC------PMCAGAIAEARCRRIVYGAGD 263


>gi|307202968|gb|EFN82184.1| Deoxycytidylate deaminase [Harpegnathos saltator]
          Length = 181

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 44/137 (32%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53
           ++D  FM+ A   ++      S +P     AC++  D  +IG G   Y G P        
Sbjct: 14  AWDEYFMAVAFLSAQ-----RSKDPYTQVGACIVNNDNKIIGIG---YNGMPIGCSDDVF 65

Query: 54  ------------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                             HAEV A L +   + +  T YV L PC+       CA+ II+
Sbjct: 66  PWNKGSYSSLDSKYLYVCHAEVNAVLNKNSSDCKDCTIYVALFPCNE------CAKVIIQ 119

Query: 95  CGIRRVVVCVDDPDVRV 111
            GIR V+   D    +V
Sbjct: 120 SGIRTVIYMSDKSSDKV 136


>gi|154248745|ref|YP_001409570.1| CMP/dCMP deaminase zinc-binding [Fervidobacterium nodosum Rt17-B1]
 gi|154152681|gb|ABS59913.1| CMP/dCMP deaminase zinc-binding [Fervidobacterium nodosum Rt17-B1]
          Length = 170

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 31/58 (53%), Gaps = 9/58 (15%)

Query: 54  HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE  AL +A   G    GAT YVT +PCS       CA+ II  GI++VV     PD
Sbjct: 96  HAEQNALIQAAKFGISTDGATIYVTHKPCS------VCARLIINAGIKKVVYIEGYPD 147


>gi|42561111|ref|NP_975562.1| dCMP deaminase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|42492608|emb|CAE77204.1| dCMP deaminase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|256384072|gb|ACU78642.1| deoxycytidylate deaminase [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|256384904|gb|ACU79473.1| deoxycytidylate deaminase [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|296455570|gb|ADH21805.1| deoxycytidylate deaminase (dCMP deaminase) [synthetic Mycoplasma
           mycoides JCVI-syn1.0]
 gi|301320471|gb|ADK69114.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale]
          Length = 160

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 47  TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
             Y    HAE+ A+  +  +      YVTL PC+       CA+ II+ GI+R+    D
Sbjct: 72  NKYAYVAHAELNAIVSSRSDLSNCDLYVTLFPCNE------CAKIIIQAGIKRIYYAND 124


>gi|58389825|ref|XP_317305.2| AGAP008158-PA [Anopheles gambiae str. PEST]
 gi|55237525|gb|EAA12688.2| AGAP008158-PA [Anopheles gambiae str. PEST]
          Length = 180

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 33/107 (30%)

Query: 26  STNPSV---ACLIVKDGIVIGRGVTAY-GGCP----------------------HAEVQA 59
           S +PS    AC++ +D  ++G G   +  GC                       HAEV A
Sbjct: 44  SKDPSTQVGACIVNEDNRIVGIGYNGFPKGCSDDEFPWSKTSDNPLETKYLYVCHAEVNA 103

Query: 60  -LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
            L +   + R  T YV L PC+       CA+ II+  IR VV   D
Sbjct: 104 ILNKNSTDVRNCTMYVALFPCNE------CAKIIIQSAIREVVYMSD 144


>gi|301756412|ref|XP_002914055.1| PREDICTED: deoxycytidylate deaminase-like [Ailuropoda melanoleuca]
          Length = 178

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 10/74 (13%)

Query: 47  TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           T Y    HAE+ A + +   + +G T YV L PC+       CA+ II+ GI+ V+   D
Sbjct: 77  TKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNE------CAKLIIQAGIKEVIFISD 130

Query: 106 ---DPDVRVSGRGL 116
              D D   + R L
Sbjct: 131 KYHDSDEMTAARRL 144


>gi|316932708|ref|YP_004107690.1| CMP/dCMP deaminase zinc-binding protein [Rhodopseudomonas palustris
           DX-1]
 gi|315600422|gb|ADU42957.1| CMP/dCMP deaminase zinc-binding protein [Rhodopseudomonas palustris
           DX-1]
          Length = 148

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 15/100 (15%)

Query: 31  VACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCSH 81
           + C+IV+DG+VI     R +T      HAE+ A+ +A      E       YVTLEPC+ 
Sbjct: 25  IGCVIVRDGVVIAKAGNRTLTDRDPTAHAELLAIRQASAKLGSERLVDCDLYVTLEPCTM 84

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                 CA  I    IRR+     DP       G+++  Q
Sbjct: 85  ------CAGAISFARIRRLYFGAFDPKGGAVESGVRFYGQ 118


>gi|313665291|ref|YP_004047162.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Mycoplasma leachii PG50]
 gi|312949249|gb|ADR23845.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Mycoplasma leachii PG50]
          Length = 160

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 47  TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
             Y    HAE+ A+  +  +      YVTL PC+       CA+ II+ GI+R+    D
Sbjct: 72  NKYAYVAHAELNAIVSSRSDLSNCDLYVTLFPCNE------CAKIIIQAGIKRIYYAND 124


>gi|298345726|ref|YP_003718413.1| nucleoside deaminase [Mobiluncus curtisii ATCC 43063]
 gi|298235787|gb|ADI66919.1| nucleoside deaminase [Mobiluncus curtisii ATCC 43063]
          Length = 180

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 17/121 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-----AYGGCPHAEV 57
           +SS + R +  A   ++   G     P  A ++  +GIV G G+       Y    HAE+
Sbjct: 29  LSSAEVRALDTAYGLAQ-KAGRAGDIPVGAVVLTPEGIVAGLGLNQRENPPYDPSAHAEI 87

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL EA         +G T   TLEPC+       CA  I+   I R++    DP     
Sbjct: 88  VALREAAGRLERWNLKGCTLVATLEPCTM------CAGAIVNARISRLIFGAWDPKAGAC 141

Query: 113 G 113
           G
Sbjct: 142 G 142


>gi|269986813|gb|EEZ93091.1| CMP/dCMP deaminase zinc-binding protein [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 159

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 9/51 (17%)

Query: 54  HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           HAE  A+ +A   G    G+TAYVT+EPC        CA+ +++ G++RVV
Sbjct: 80  HAEQNAITQAAKFGVSLDGSTAYVTMEPCF------VCAKMLVQVGVKRVV 124


>gi|223944391|gb|ACN26279.1| unknown [Zea mays]
          Length = 154

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 35/134 (26%)

Query: 32  ACLIVKDGIVIGRGVTAYG-GCP------------------------HAEVQA-LEEAGE 65
           ACL+ ++GI++G G   +  GC                         HAEV A L     
Sbjct: 20  ACLVSQEGIILGIGYNGFPRGCSDDKLPWAKKSASGDPLETKFPYVVHAEVNAILNTNHA 79

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD---DPDVRVSGRGLQWLSQK 122
            A G   YVT+ PC+       CA+ II+ G+  V+  V+   D    V     + LS  
Sbjct: 80  SAAGQKLYVTMFPCNE------CAKIIIQSGVSEVIYFVEKKIDNSAHVYVASHKLLSMA 133

Query: 123 GIIVDRMMESEGKI 136
           G+ V +      +I
Sbjct: 134 GVKVRKHQPQMAQI 147


>gi|57866115|ref|YP_187800.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
           epidermidis RP62A]
 gi|242241897|ref|ZP_04796342.1| deaminase [Staphylococcus epidermidis W23144]
 gi|251809981|ref|ZP_04824454.1| deaminase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874984|ref|ZP_06283859.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Staphylococcus epidermidis SK135]
 gi|57636773|gb|AAW53561.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
           epidermidis RP62A]
 gi|242234675|gb|EES36987.1| deaminase [Staphylococcus epidermidis W23144]
 gi|251806524|gb|EES59181.1| deaminase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296312|gb|EFA88831.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Staphylococcus epidermidis SK135]
          Length = 168

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 54/134 (40%), Gaps = 20/134 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           +  +IVK+  VI R      T      HAE  A+E A E          T YVTLEPC  
Sbjct: 26  IGAVIVKEDQVIARAHNLRETLQQPTAHAEHIAIERASEVVGSWRLEECTLYVTLEPCVM 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGKI 136
                 CA  II   I +VV    DP    SG  +  L Q     + I+   ++E E   
Sbjct: 86  ------CAGTIIMSRIPKVVYGATDPKGGCSGSLMNLLEQPQFNHRAIVEKGILEEECAE 139

Query: 137 FLHAYLTRQVEKRS 150
            L ++     EK+ 
Sbjct: 140 LLRSFFKEIREKKK 153


>gi|330837260|ref|YP_004411901.1| dCMP deaminase [Spirochaeta coccoides DSM 17374]
 gi|329749163|gb|AEC02519.1| dCMP deaminase [Spirochaeta coccoides DSM 17374]
          Length = 161

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 36/126 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAY-GGCP------- 53
           S+D  FM  AL        + S +PS    AC++  +  ++G G   +  GC        
Sbjct: 9   SWDEYFMGVAL-----LSAMRSKDPSTQVGACIVSPEKRIVGVGYNGFPSGCNDDDLPWE 63

Query: 54  --------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                         HAE+ A+  +    +G++ YV L PC+       CA+ II+ GI  
Sbjct: 64  REGAFLETKYPFVCHAELNAILNSSGNLKGSSLYVALFPCNE------CAKAIIQAGIVE 117

Query: 100 VVVCVD 105
           +V   D
Sbjct: 118 IVYLSD 123


>gi|325292072|ref|YP_004277936.1| cytidine and deoxycytidylate deaminase [Agrobacterium sp. H13-3]
 gi|325059925|gb|ADY63616.1| cytidine and deoxycytidylate deaminase [Agrobacterium sp. H13-3]
          Length = 152

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 25/105 (23%)

Query: 31  VACLIVKDGIVIGRG---------VTAYGGCPHAEVQALE---EAGEEAR--GATAYVTL 76
           +  ++V DG VI R          VTA     HAE+  +    EA E+ R  GA  YVTL
Sbjct: 26  IGAVLVMDGRVIARSGNRTRELNDVTA-----HAEIAVIRMACEALEQERLPGADLYVTL 80

Query: 77  EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           EPC+       CA  I    IRR+    +DP       G+++ SQ
Sbjct: 81  EPCTM------CAAAISFARIRRLYYGAEDPKGGAVHSGVRFFSQ 119


>gi|283796628|ref|ZP_06345781.1| putative deoxycytidylate deaminase [Clostridium sp. M62/1]
 gi|291076051|gb|EFE13415.1| putative deoxycytidylate deaminase [Clostridium sp. M62/1]
 gi|295092489|emb|CBK78596.1| Deoxycytidylate deaminase [Clostridium cf. saccharolyticum K10]
 gi|295115332|emb|CBL36179.1| Deoxycytidylate deaminase [butyrate-producing bacterium SM4/1]
          Length = 176

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 56/145 (38%), Gaps = 44/145 (30%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYG-GCP------- 53
           ++D  FM  A         + S +PS    AC++  D  ++  G   +  GC        
Sbjct: 22  TWDEYFMGVAKL-----AAMRSKDPSTQVGACIVSSDNKILSMGYNGFPIGCSDDEFPWG 76

Query: 54  -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                            H+E+ A L   G    G+  YVTL PC+       CA+ II+ 
Sbjct: 77  KEHETDDPYNAKYLYTTHSELNAILNYRGGSLEGSKLYVTLFPCNE------CAKAIIQA 130

Query: 96  GIRRVVV----CVDDPDVRVSGRGL 116
           GIR +V       D P VR S R L
Sbjct: 131 GIRTLVYDSDKYQDTPSVRASKRML 155


>gi|329897048|ref|ZP_08271820.1| tRNA-specific adenosine-34 deaminase [gamma proteobacterium
           IMCC3088]
 gi|328921488|gb|EGG28874.1| tRNA-specific adenosine-34 deaminase [gamma proteobacterium
           IMCC3088]
          Length = 159

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 15/86 (17%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V C+IV+DG +I  G    +++     HAE+ AL  AG          A+ YVTLEPC  
Sbjct: 26  VGCVIVRDGSLIASGHNVVISSADPSAHAEIVALRHAGSRIGNYRLVDASLYVTLEPC-- 83

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDP 107
                 C   ++   ++R++    +P
Sbjct: 84  ----LMCVGAMVHARVQRLIFAATEP 105


>gi|326798488|ref|YP_004316307.1| CMP/dCMP deaminase zinc-binding protein [Sphingobacterium sp. 21]
 gi|326549252|gb|ADZ77637.1| CMP/dCMP deaminase zinc-binding protein [Sphingobacterium sp. 21]
          Length = 156

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 29/157 (18%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM  ALR ++      +    +  +IV DG +I RG     T      HAE+QA   
Sbjct: 15  DEFFMKEALREAQ--KAFDADEVPIGAVIVHDGKIIARGHNLTETLNDVTAHAEMQAFTA 72

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G+  +  T YVT+EPC        CA       I+R+V    D       RG  
Sbjct: 73  AANYIGGKYLKDCTLYVTIEPC------VMCAGASYWSQIKRIVFGARD-----EKRGYA 121

Query: 118 WLSQ-----KGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            +S+     K  +V  +ME   +  +  +   Q+++R
Sbjct: 122 TISKDIVHPKTTVVSGIMEETCRELMQRFF--QLKRR 156


>gi|319399688|gb|EFV87937.1| cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Staphylococcus epidermidis FRI909]
          Length = 168

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 54/134 (40%), Gaps = 20/134 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           +  +IVK+  VI R      T      HAE  A+E A E          T YVTLEPC  
Sbjct: 26  IGAVIVKEDQVIARAHNLRETLQQPTAHAEHIAIERASEVVGSWRLEECTLYVTLEPCVM 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGKI 136
                 CA  II   I +VV    DP    SG  +  L Q     + I+   ++E E   
Sbjct: 86  ------CAGTIIMSRIPKVVYGATDPKGGCSGSLMNLLEQPQFNHRAIVEKGILEEECAE 139

Query: 137 FLHAYLTRQVEKRS 150
            L ++     EK+ 
Sbjct: 140 LLRSFFKEIREKKK 153


>gi|224013458|ref|XP_002296393.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968745|gb|EED87089.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 543

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 65/157 (41%), Gaps = 25/157 (15%)

Query: 144 RQVEKRSHITLKIAVSQDNMIGM---------AGCGSVPITGFISKNQVHLLRAQSDAIL 194
           R   +R  ITL  A + D MI               ++ ++   S    H LR   DAIL
Sbjct: 128 RVARRRPFITLAYAQTLDGMIAAKTSNDKSKATTTSNMRLSSPQSTVLTHQLRNMHDAIL 187

Query: 195 VGIGTVLADDPELTCRL----NGLQE--HSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           VG  T L D P L  RL    N +      P+ ++LD H  L+   +++   +L P  + 
Sbjct: 188 VGGSTFLVDAPRLNVRLQPDTNKMDSMTQQPIPVVLDTH--LNALQQVLWGEVLPP--LA 243

Query: 249 TENDDP---VLALAFRKKNI---NIIYCDCRDLKKLL 279
            ++DD    VL    +  NI   N + C   D  K+ 
Sbjct: 244 ADHDDEEELVLPQEMQVDNIRANNPVICCSSDAAKVF 280


>gi|224371400|ref|YP_002605564.1| Cdh2 [Desulfobacterium autotrophicum HRM2]
 gi|223694117|gb|ACN17400.1| Cdh2 [Desulfobacterium autotrophicum HRM2]
          Length = 626

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 8/136 (5%)

Query: 58  QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           +A ++AG+  +G    + L P  H G     ++ +  C      + VD  D+ V+G   +
Sbjct: 491 EAADQAGDGLKGVCKALGLPPVLHMGSCVDISRILTVCAAVANALGVDISDLPVAGAAPE 550

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA-GCGSVPITG 176
           W+S+K + +   + S G IF       QV     +T  +    ++++G A    + P+ G
Sbjct: 551 WMSEKAVSIGAYVVSSG-IFTVLGTVPQVLGSPFVTEILTKIANDVVGAAFAVETDPVKG 609

Query: 177 FISKNQVHLLRAQSDA 192
                  HL+ A  DA
Sbjct: 610 ------AHLMIAHMDA 619


>gi|126652937|ref|ZP_01725079.1| probable cytidine/deoxycytidylate deaminase family protein
           [Bacillus sp. B14905]
 gi|126590267|gb|EAZ84389.1| probable cytidine/deoxycytidylate deaminase family protein
           [Bacillus sp. B14905]
          Length = 170

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 17/115 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           M +   D  FM  AL  ++    +    P +  ++V DG +I R      T      HAE
Sbjct: 1   MDIFETDRLFMKQALEEAK-KAAILGEVP-IGAVLVYDGEIIARAHNLRETTQNATTHAE 58

Query: 57  VQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           +  ++EA ++         T YVTLEPC      P CA  I++  + RVV    D
Sbjct: 59  LMVIQEACQKIGSWRLEKTTLYVTLEPC------PMCAGAILQSRVPRVVYGARD 107


>gi|290978118|ref|XP_002671783.1| predicted protein [Naegleria gruberi]
 gi|284085355|gb|EFC39039.1| predicted protein [Naegleria gruberi]
          Length = 214

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 23/110 (20%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
           D  +M  AL  ++    L      V C+IV D  ++GRG            HAE++A +E
Sbjct: 18  DEIYMREALNMAQ--KALEELEVPVGCVIVHDNKIVGRGYNKTNQKKNATRHAELEAFDE 75

Query: 63  AGEEA-----------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
             E             +  T YVT+EPC        CA  +I   I RVV
Sbjct: 76  ITENYSEELNNNVNFFKECTLYVTVEPCV------MCASALILLKIGRVV 119


>gi|281354625|gb|EFB30209.1| hypothetical protein PANDA_001894 [Ailuropoda melanoleuca]
          Length = 182

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 10/74 (13%)

Query: 47  TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           T Y    HAE+ A + +   + +G T YV L PC+       CA+ II+ GI+ V+   D
Sbjct: 82  TKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNE------CAKLIIQAGIKEVIFISD 135

Query: 106 ---DPDVRVSGRGL 116
              D D   + R L
Sbjct: 136 KYHDSDEMTAARRL 149


>gi|237733437|ref|ZP_04563918.1| tRNA-adenosine deaminase [Mollicutes bacterium D7]
 gi|229383472|gb|EEO33563.1| tRNA-adenosine deaminase [Coprobacillus sp. D7]
          Length = 152

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 40/80 (50%), Gaps = 15/80 (18%)

Query: 31  VACLIVKDGIVI--GRGV--TAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  +IVKDG +I  GR +  T+     HAE+ A+EEA            T YVTLEPC  
Sbjct: 26  VGAVIVKDGKIIACGRNLRETSKRATAHAEIIAIEEACRTLNSWYLDECTLYVTLEPCVM 85

Query: 82  YGRSPPCAQFIIECGIRRVV 101
                 C+  II   I+RVV
Sbjct: 86  ------CSGAIINSRIQRVV 99


>gi|115440135|ref|NP_001044347.1| Os01g0765000 [Oryza sativa Japonica Group]
 gi|57899567|dbj|BAD87146.1| deoxycytidylate deaminase-like [Oryza sativa Japonica Group]
 gi|113533878|dbj|BAF06261.1| Os01g0765000 [Oryza sativa Japonica Group]
 gi|215678846|dbj|BAG95283.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 248

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 40/130 (30%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYG-GCP------- 53
           S+D  FM+ A   ++      S +P+    ACL+ ++GI++G G   +  GC        
Sbjct: 75  SWDDYFMAIAFLSAK-----RSKDPNRQVGACLVSQEGIILGIGYNGFPRGCSDNKLPWA 129

Query: 54  -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                            HAEV A L      A G   YVT+ PC+       CA+ II+ 
Sbjct: 130 KKSAKGDPLETKYPYVVHAEVNAILNTNHASAAGQKLYVTMFPCNE------CAKIIIQS 183

Query: 96  GIRRVVVCVD 105
           G+  V+  V+
Sbjct: 184 GVSEVIYFVE 193


>gi|78045157|ref|YP_361349.1| putative comE operon protein 2 [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77997272|gb|ABB16171.1| putative comE operon protein 2 [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 170

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 9/58 (15%)

Query: 54  HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE  A+ +A   G    G+T Y+T +PCS       CA+ +I  G+ RVV   D PD
Sbjct: 99  HAEQNAIIQAAVYGVSTSGSTIYITHQPCS------LCAKMLINAGVERVVYKGDYPD 150


>gi|325678499|ref|ZP_08158114.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Ruminococcus albus 8]
 gi|324109810|gb|EGC04011.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Ruminococcus albus 8]
          Length = 248

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 6/59 (10%)

Query: 47  TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           T Y    HAE+ A+  +  + +G+  YV+L PC+       CA+ II+ GI+ V+   D
Sbjct: 71  TKYPFVCHAELNAVLNSNHDLKGSRIYVSLFPCNE------CAKAIIQSGIKEVIYTCD 123


>gi|163816077|ref|ZP_02207447.1| hypothetical protein COPEUT_02257 [Coprococcus eutactus ATCC 27759]
 gi|158448887|gb|EDP25882.1| hypothetical protein COPEUT_02257 [Coprococcus eutactus ATCC 27759]
          Length = 159

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 62/160 (38%), Gaps = 43/160 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53
           S+D  FM  A+  +       S +PS    AC++ K+  ++  G   Y G P        
Sbjct: 8   SWDQYFMGIAMMSAE-----RSKDPSTQVGACIVDKNNRILSMG---YNGMPAGCDDDAM 59

Query: 54  -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                            HAE+ + L   G   + A  Y TL PC+       CA+ II+C
Sbjct: 60  PWGKVGNPLDNKYFYVCHAELNSILNYRGGNLKDAIIYSTLFPCNE------CAKAIIQC 113

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135
           GI+ VV   D      S    + +     +  R  ES+GK
Sbjct: 114 GIKEVVYMSDKYASTDSTIASKRMFDMAGVKYRQFESKGK 153


>gi|153207852|ref|ZP_01946429.1| tRNA-specific adenosine deaminase [Coxiella burnetii 'MSU Goat
           Q177']
 gi|154706920|ref|YP_001424041.1| tRNA-specific adenosine deaminase [Coxiella burnetii Dugway
           5J108-111]
 gi|161830554|ref|YP_001596549.1| tRNA-specific adenosine deaminase [Coxiella burnetii RSA 331]
 gi|165918843|ref|ZP_02218929.1| tRNA-specific adenosine deaminase [Coxiella burnetii RSA 334]
 gi|212212896|ref|YP_002303832.1| tRNA-specific adenosine deaminase [Coxiella burnetii CbuG_Q212]
 gi|212219141|ref|YP_002305928.1| tRNA-specific adenosine deaminase [Coxiella burnetii CbuK_Q154]
 gi|215919009|ref|NP_819652.2| zinc-binding domain-containing protein [Coxiella burnetii RSA 493]
 gi|120576278|gb|EAX32902.1| tRNA-specific adenosine deaminase [Coxiella burnetii 'MSU Goat
           Q177']
 gi|154356206|gb|ABS77668.1| tRNA-specific adenosine deaminase [Coxiella burnetii Dugway
           5J108-111]
 gi|161762421|gb|ABX78063.1| tRNA-specific adenosine deaminase [Coxiella burnetii RSA 331]
 gi|165917475|gb|EDR36079.1| tRNA-specific adenosine deaminase [Coxiella burnetii RSA 334]
 gi|206583894|gb|AAO90166.2| tRNA-specific adenosine deaminase [Coxiella burnetii RSA 493]
 gi|212011306|gb|ACJ18687.1| tRNA-specific adenosine deaminase [Coxiella burnetii CbuG_Q212]
 gi|212013403|gb|ACJ20783.1| tRNA-specific adenosine deaminase [Coxiella burnetii CbuK_Q154]
          Length = 148

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 17/124 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM  AL  ++      +    +  ++VK+  ++G G    +T      HAE+ AL  
Sbjct: 3   DELFMHEALALAK--KANENNEVPIGAVLVKENEIVGHGFNEPITLNDPTAHAEILALRN 60

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +          T YVTLEPC+       C   +I+  I+R+V    DP         Q
Sbjct: 61  AAKRVGNYRLVDTTLYVTLEPCAM------CVGAMIQARIKRLVFGAFDPRAGAVESVFQ 114

Query: 118 WLSQ 121
            L++
Sbjct: 115 LLNE 118


>gi|194335892|ref|YP_002017686.1| CMP/dCMP deaminase zinc-binding [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308369|gb|ACF43069.1| CMP/dCMP deaminase zinc-binding [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 155

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 64/155 (41%), Gaps = 27/155 (17%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA-- 63
           F  A   F R  V      P  A ++  +G VIGRG            HAE+ AL  A  
Sbjct: 12  FREAIKAFERKEV------PVGAVVLDSNGHVIGRGYNQVEALCDSTAHAEMIALTSAMA 65

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG-----RG 115
               +     T  VTLEPC      P CA  I+   + RV+    DP +  +G      G
Sbjct: 66  TLGSKYLNDCTLAVTLEPC------PMCAGAIVNAKVGRVIFGAYDPKMGAAGTVMNVTG 119

Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
            + L+ +  +   +ME++ +  L  +  R++ K S
Sbjct: 120 SRQLNHQPEVFGGIMENKCRNLLQDFF-RELRKGS 153


>gi|301510605|ref|ZP_07235842.1| putative deaminase [Acinetobacter baumannii AB058]
          Length = 167

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 18/98 (18%)

Query: 31  VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEARG------ATAYVTLEPCS 80
           V  +IV    +IG G  A  G      HAE+QA+  A E  +       AT YVTLEPC+
Sbjct: 28  VGAVIVSQNKLIGAGFNAPIGLSDPTAHAEIQAIRAACESLKNYRLPEDATLYVTLEPCT 87

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDV--RVSGRGL 116
                  C   ++   I+ VV    +P     VS R L
Sbjct: 88  M------CVGALVHARIKHVVFGTTEPKAGSLVSARQL 119


>gi|329903280|ref|ZP_08273412.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327548444|gb|EGF33120.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 228

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 274 DLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           DL K++ +L    G   L+VEGG  V+ SF+N+ LVD + +    ++ G G  P+  E
Sbjct: 139 DLAKVVALLADELGTKRLIVEGGPHVSGSFVNAGLVDEVSVLVLPLIDGRGDHPASFE 196


>gi|169796135|ref|YP_001713928.1| putative deaminase [Acinetobacter baumannii AYE]
 gi|301597400|ref|ZP_07242408.1| putative deaminase [Acinetobacter baumannii AB059]
 gi|169149062|emb|CAM86939.1| putative deaminase [Acinetobacter baumannii AYE]
          Length = 167

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 18/98 (18%)

Query: 31  VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEARG------ATAYVTLEPCS 80
           V  +IV    +IG G  A  G      HAE+QA+  A E  +       AT YVTLEPC+
Sbjct: 28  VGAVIVSQNKLIGAGFNAPIGLSDPTAHAEIQAIRAACESLKNYRLPEDATLYVTLEPCT 87

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDV--RVSGRGL 116
                  C   ++   I+ VV    +P     VS R L
Sbjct: 88  M------CVGALVHARIKHVVFGTTEPKAGSLVSARQL 119


>gi|15827698|ref|NP_301961.1| hypothetical protein ML1340 [Mycobacterium leprae TN]
 gi|221230175|ref|YP_002503591.1| hypothetical protein MLBr_01340 [Mycobacterium leprae Br4923]
 gi|2065234|emb|CAB08270.1| hypothetical protein MLC1351.23 [Mycobacterium leprae]
 gi|13093249|emb|CAC31721.1| possible reductase [Mycobacterium leprae]
 gi|219933282|emb|CAR71435.1| possible reductase [Mycobacterium leprae Br4923]
          Length = 268

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 22/155 (14%)

Query: 184 HLLRAQSDAILVGIGTVLADD--------PELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
           ++LR  +D I+VG GTV  ++         +   R    Q   P   I+    +L  D  
Sbjct: 82  NMLRELADVIVVGAGTVRIENYSGAHLPVTKRQQRQARGQSEVPQLAIVTNSGRLDRDMA 141

Query: 236 IIKTALLAPVIIV-TENDDPVLALAFRKKNINIIY---CDCRDLKKL-----LTILVGRG 286
           +     +AP+++  TE      A   R +  ++ Y   C   D  K+     L  L  RG
Sbjct: 142 VFTRTEIAPLVLTCTET-----AKKLRTRLADLAYVVSCSGDDPSKVDETVVLATLQTRG 196

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           +  +L EGG  +  SFI   ++D + L  + +++G
Sbjct: 197 LRRVLTEGGPMLLGSFIQHGMLDELCLTIAPLIVG 231


>gi|152973870|ref|YP_001373387.1| CMP/dCMP deaminase zinc-binding [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152022622|gb|ABS20392.1| CMP/dCMP deaminase zinc-binding [Bacillus cytotoxicus NVH 391-98]
          Length = 164

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 20/135 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           +  ++V DG VI        T      HAE+ A+++A +         AT YVTLEPC  
Sbjct: 26  IGAVLVLDGKVISSAHNLRETEQRSIAHAELLAIDKACKALGTWRLEHATLYVTLEPC-- 83

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P CA  I+   ++RVV    DP    +G  +  L+ +       +V  +ME E   
Sbjct: 84  ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVSGVMEEECGA 139

Query: 137 FLHAYLTRQVEKRSH 151
            L ++      KR  
Sbjct: 140 LLTSFFRELRRKRKE 154


>gi|229107707|ref|ZP_04237345.1| hypothetical protein bcere0018_100 [Bacillus cereus Rock1-15]
 gi|228675747|gb|EEL30953.1| hypothetical protein bcere0018_100 [Bacillus cereus Rock1-15]
          Length = 166

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 20/136 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  +IV DG VI        T      HAE+ A+++A ++        AT YVTLEPC  
Sbjct: 28  IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDDACKKLGTWRLEDATLYVTLEPC-- 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P CA  I+   ++RVV    DP    +G  +  L+ +       +V  ++E E   
Sbjct: 86  ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVSGVLEEECGA 141

Query: 137 FLHAYLTRQVEKRSHI 152
            L  +     +KR  I
Sbjct: 142 LLTNFFRELRKKRKAI 157


>gi|90422427|ref|YP_530797.1| CMP/dCMP deaminase, zinc-binding [Rhodopseudomonas palustris
           BisB18]
 gi|90104441|gb|ABD86478.1| tRNA-adenosine deaminase [Rhodopseudomonas palustris BisB18]
          Length = 148

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 52/123 (42%), Gaps = 17/123 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEA 63
           A FM  AL+ +       +    + C+IV +  VI     R +T      HAEV A+ +A
Sbjct: 4   ASFMDLALKAA--ETAQNAGEVPIGCVIVLNNAVIASAGNRTLTDRDPTAHAEVLAIRQA 61

Query: 64  G-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                 E   G   YVTLEPC+       CA  I    IRR+     DP       G+++
Sbjct: 62  AAALGSERLSGCDLYVTLEPCTM------CAGAISFARIRRLYYGAADPKGGAVESGVRF 115

Query: 119 LSQ 121
            +Q
Sbjct: 116 FAQ 118


>gi|194212324|ref|XP_001917931.1| PREDICTED: similar to Deoxycytidylate deaminase (dCMP deaminase)
           [Equus caballus]
          Length = 178

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 10/74 (13%)

Query: 47  TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           T Y    HAE+ A + +   + +G T YV L PC+       CA+ II+ GI+ V+   D
Sbjct: 77  TKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNE------CAKLIIQTGIKEVIFMSD 130

Query: 106 ---DPDVRVSGRGL 116
              D D   + R L
Sbjct: 131 KYHDSDEATAARLL 144


>gi|255540237|ref|XP_002511183.1| deoxycytidylate deaminase, putative [Ricinus communis]
 gi|223550298|gb|EEF51785.1| deoxycytidylate deaminase, putative [Ricinus communis]
          Length = 224

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 32/100 (32%)

Query: 32  ACLIVKDGIVIGRGVTAYG-GCP------------------------HAEVQA-LEEAGE 65
           ACL+ ++G+++G G   +  GC                         HAEV A L     
Sbjct: 88  ACLVSQNGVILGIGYNGFPRGCSDDKLPWAKKSKTGNPLETKYPYVCHAEVNAILNTNHA 147

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
            A G   YVT+ PC+       CA+ II+ G+  V+  V+
Sbjct: 148 SAAGQKLYVTMFPCNE------CAKIIIQSGVSEVIYFVE 181


>gi|149742700|ref|XP_001492380.1| PREDICTED: dCMP deaminase [Equus caballus]
          Length = 178

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 10/74 (13%)

Query: 47  TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           T Y    HAE+ A + +   + +G T YV L PC+       CA+ II+ GI+ V+   D
Sbjct: 77  TKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNE------CAKLIIQAGIKEVIFMSD 130

Query: 106 ---DPDVRVSGRGL 116
              D D   + R L
Sbjct: 131 KYHDSDEATAARLL 144


>gi|220919906|ref|YP_002495209.1| CMP/dCMP deaminase zinc-binding [Methylobacterium nodulans ORS
           2060]
 gi|219952326|gb|ACL62717.1| CMP/dCMP deaminase zinc-binding [Methylobacterium nodulans ORS
           2060]
          Length = 160

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 15/112 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D +FM+ A+  S     + S      C+IV+DG ++  G    V       H E++A+ +
Sbjct: 5   DKKFMARAIELSEKTSLVESAGGVFGCVIVQDGEILAEGANRVVAENDPTWHGEIEAIRK 64

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           A +     + R AT Y + EPC      P C       GI+ +     + D 
Sbjct: 65  ACKAQGSFKLRDATLYTSAEPC------PMCMAAAYWAGIKAIYYAATNEDA 110


>gi|282856349|ref|ZP_06265628.1| cytidine and deoxycytidylate deaminase family protein
           [Pyramidobacter piscolens W5455]
 gi|282585720|gb|EFB91009.1| cytidine and deoxycytidylate deaminase family protein
           [Pyramidobacter piscolens W5455]
          Length = 166

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 45/106 (42%), Gaps = 18/106 (16%)

Query: 54  HAEVQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAEV AL EA          G + YVTLEPC      P CA  +++  + R+V    DP 
Sbjct: 55  HAEVVALREAARNLGVWNLNGCSLYVTLEPC------PMCAGALVQARVSRLVYGCTDPK 108

Query: 109 VRVSGRGLQWLSQKGIIVDRM------MESEGKIFLHAYLTRQVEK 148
               G  L  L++   +  R+      ME E +  L  +     EK
Sbjct: 109 AGACGT-LYDLTRDTRLFHRLQVVPGVMEQECRALLQDFFRECREK 153


>gi|157736310|ref|YP_001488993.1| dCMP deaminase, putative [Arcobacter butzleri RM4018]
 gi|315635442|ref|ZP_07890708.1| CMP/dCMP deaminase [Arcobacter butzleri JV22]
 gi|157698164|gb|ABV66324.1| dCMP deaminase, putative [Arcobacter butzleri RM4018]
 gi|315480200|gb|EFU70867.1| CMP/dCMP deaminase [Arcobacter butzleri JV22]
          Length = 147

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 42/101 (41%), Gaps = 39/101 (38%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP---------------------------HAEVQALEEA 63
           V  +IVKDG ++  G   Y G P                           HAE+ A+  A
Sbjct: 25  VGAVIVKDGRILSTG---YNGTPAGYINCSEHWKGEYTKDHHEWSKTYEIHAEMNAIIWA 81

Query: 64  GEEA---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
             +     G T YVTLEPCS       C++ +I  GI+R+V
Sbjct: 82  ARKGISIEGGTIYVTLEPCS------ECSKNLIASGIKRIV 116


>gi|228956462|ref|ZP_04118260.1| hypothetical protein bthur0005_100 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228803219|gb|EEM50039.1| hypothetical protein bthur0005_100 [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 166

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 20/136 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  +IV DG +I        T      HAE+ A+++A ++        AT YVTLEPC  
Sbjct: 28  IGAVIVLDGEIISVAHNLRETEQRSIAHAELLAIDDACKKLGTWRLEDATLYVTLEPC-- 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P CA  I+   ++RVV    DP    +G  +  L+ +       +V  ++E E   
Sbjct: 86  ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVSGVLEEECGT 141

Query: 137 FLHAYLTRQVEKRSHI 152
            L  +     +KR  I
Sbjct: 142 LLTNFFRELRKKRKAI 157


>gi|332980851|ref|YP_004462292.1| CMP/dCMP deaminase zinc-binding protein [Mahella australiensis 50-1
           BON]
 gi|332698529|gb|AEE95470.1| CMP/dCMP deaminase zinc-binding protein [Mahella australiensis 50-1
           BON]
          Length = 170

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 13/78 (16%)

Query: 54  HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           HAE  A+ +A   G   + AT Y+T +PC+       CA+ II  GI R+V   D PD  
Sbjct: 77  HAEQNAIAQAAMMGISVKDATIYITTQPCA------ICAKMIINAGITRIVYKGDYPD-- 128

Query: 111 VSGRGLQWLSQKGIIVDR 128
                +  L + GI V R
Sbjct: 129 --ALAMDLLREAGIEVAR 144


>gi|91779380|ref|YP_554588.1| putative pyrimidine reductase [Burkholderia xenovorans LB400]
 gi|91692040|gb|ABE35238.1| putative pyrimidine reductase [Burkholderia xenovorans LB400]
          Length = 225

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 15/117 (12%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVI-IVTEN--DDPVLALAFRKKNINIIYC----DCRD 274
           I +DP  +++  S    TAL + VI ++TE   DD +  L    ++I + Y        D
Sbjct: 84  ISIDPQGRVAWKSN---TALKSHVIEVLTEQVADDYLAYL----QSIGVSYVFGGKTGID 136

Query: 275 LKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           L K++  L    GV  L+VEGG+ V+ +F+N+ LVD + +    +V G    PS  E
Sbjct: 137 LDKVVQTLARELGVKKLIVEGGSHVSGAFVNAGLVDEVSVLILPLVDGRSEHPSSFE 193


>gi|309775004|ref|ZP_07670019.1| cytidine/deoxycytidylate deaminase family protein
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917222|gb|EFP62947.1| cytidine/deoxycytidylate deaminase family protein
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 162

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 15/86 (17%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           + C+IVKD  +I RG     +      HAE+ A+++A ++           YVTLEPC  
Sbjct: 35  IGCVIVKDDKIIARGHNLRESKQQSINHAEIIAIQKACKKIGSWRLEDCDLYVTLEPCCM 94

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDP 107
                 CA  I++  IR V+    DP
Sbjct: 95  ------CAGAILQSRIRTVIYGASDP 114


>gi|260806557|ref|XP_002598150.1| hypothetical protein BRAFLDRAFT_82934 [Branchiostoma floridae]
 gi|229283422|gb|EEN54162.1| hypothetical protein BRAFLDRAFT_82934 [Branchiostoma floridae]
          Length = 200

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 7/60 (11%)

Query: 47  TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           T Y    HAE+ A L +   + +G T YV L PC+       CA+ +I+ GIR +V   D
Sbjct: 94  TKYPYVCHAELNAILNKNSADVKGCTMYVALFPCNE------CAKLVIQSGIREIVFMSD 147


>gi|187919113|ref|YP_001888144.1| bifunctional deaminase-reductase domain-containing protein
           [Burkholderia phytofirmans PsJN]
 gi|187717551|gb|ACD18774.1| bifunctional deaminase-reductase domain protein [Burkholderia
           phytofirmans PsJN]
          Length = 225

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 15/117 (12%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVI-IVTEN--DDPVLALAFRKKNINIIYC----DCRD 274
           I +DP  +++  S    TAL + VI ++TE   DD +  L    ++I + Y        D
Sbjct: 84  ISIDPQGRVAWKSN---TALKSHVIEVLTEQVADDYLAYL----QSIGVSYVFGGKTELD 136

Query: 275 LKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           L K++  L    GV  L+VEGG+ V+ +F+N+ LVD + +    +V G    PS  E
Sbjct: 137 LGKVVQTLARELGVKKLIVEGGSHVSGAFVNAGLVDEVSVLILPLVDGRSEHPSSFE 193


>gi|91202838|emb|CAJ72477.1| similar to dCMP deaminase [Candidatus Kuenenia stuttgartiensis]
          Length = 158

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 9/58 (15%)

Query: 54  HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+ AL +A   G +  GAT Y T  PCS       CA+ ++  GI+R+V   D PD
Sbjct: 79  HAEMNALIQAARYGIKISGATLYSTTCPCSL------CAKMLVNAGIKRIVAISDYPD 130


>gi|218234516|ref|YP_002364872.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus B4264]
 gi|218162473|gb|ACK62465.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus B4264]
          Length = 166

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 20/136 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  +IV DG VI        T      HAE+ A+++A ++        AT YVTLEPC  
Sbjct: 28  IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDDACKKLGTWRLEDATLYVTLEPC-- 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136
               P CA  I+   ++RVV    DP    +G  +  L+         +V  ++E E   
Sbjct: 86  ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDDRFNHQCEVVSGVLEEECGT 141

Query: 137 FLHAYLTRQVEKRSHI 152
            L  +     +KR  I
Sbjct: 142 LLTNFFRELRKKRKAI 157


>gi|62955247|ref|NP_001017639.1| deoxycytidylate deaminase [Danio rerio]
 gi|62202187|gb|AAH92809.1| DCMP deaminase [Danio rerio]
          Length = 201

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 14/97 (14%)

Query: 47  TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           T Y    HAE+ A + +   + +G + YV L PC+       CA+ II+ GI+ V+   D
Sbjct: 92  TKYPYVCHAELNAIMNKNSADVKGCSIYVALFPCNE------CAKLIIQAGIKDVIYLSD 145

Query: 106 D----PDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138
                P++  S R    L+  G+   +    +G+I +
Sbjct: 146 KYHDTPEMTASRR---LLNLAGVTYKQFKPKQGRIVI 179


>gi|46370356|gb|AAS89964.1| deaminase [Agrobacterium vitis]
          Length = 149

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 58/133 (43%), Gaps = 31/133 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG---------VTAYGGCPHA 55
           +   RFM  AL  +R   G     P +  ++VKDG+++ +          VTA     HA
Sbjct: 2   TLTTRFMDVALEEARL-AGARGEVP-IGAVLVKDGVILAQAGNETRALQDVTA-----HA 54

Query: 56  EVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+  A      E   GA  YVTLEPC+       CA  I    IRR+      PD +
Sbjct: 55  EILAIRRACTILEDERLAGADLYVTLEPCTM------CAAAISFARIRRLYYGA--PDEK 106

Query: 111 VSG--RGLQWLSQ 121
             G   G ++ SQ
Sbjct: 107 GGGVDHGARFYSQ 119


>gi|92118638|ref|YP_578367.1| CMP/dCMP deaminase, zinc-binding [Nitrobacter hamburgensis X14]
 gi|91801532|gb|ABE63907.1| tRNA-adenosine deaminase [Nitrobacter hamburgensis X14]
          Length = 148

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 51/126 (40%), Gaps = 20/126 (15%)

Query: 31  VACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEAG-----EEARGATAYVTLEPCSH 81
           + C+IV+DG VI     R +T      HAEV AL  A      E       YVTLEPC+ 
Sbjct: 25  IGCVIVRDGEVIAAAGNRTLTDRDPTAHAEVLALRAAAHAIGSERLTDCDLYVTLEPCTM 84

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS-----QKGIIVDRMMESEGKI 136
                 CA  I    IRR+     DP       G+++ +      +  +   + ESE   
Sbjct: 85  ------CAGAISFARIRRLYYGAPDPKGGAVDSGVRFFAAPTCHHRPEVYPAVGESEAAT 138

Query: 137 FLHAYL 142
            L  + 
Sbjct: 139 LLRDFF 144


>gi|83319549|ref|YP_424377.1| deoxycytidylate deaminase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|83283435|gb|ABC01367.1| probable deoxycytidylate deaminase [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 153

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 49  YGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           Y    HAE+ A+  +  +      YVTL PC+       CA+ II+ GI+R+    D
Sbjct: 67  YAYVAHAELNAIVSSRSDLSNCDLYVTLFPCNE------CAKIIIQAGIKRIYYAND 117


>gi|332851789|ref|ZP_08433714.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Acinetobacter baumannii 6013150]
 gi|332865831|ref|ZP_08436615.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Acinetobacter baumannii 6013113]
 gi|332729796|gb|EGJ61131.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Acinetobacter baumannii 6013150]
 gi|332735043|gb|EGJ66128.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Acinetobacter baumannii 6013113]
          Length = 170

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 18/98 (18%)

Query: 31  VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEARG------ATAYVTLEPCS 80
           V  +IV    +IG G  A  G      HAE+QA+  A E  +       AT YVTLEPC+
Sbjct: 28  VGAVIVSQNKLIGAGFNAPIGLSDPTAHAEIQAIRAACESLKNYRLPEDATLYVTLEPCT 87

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDV--RVSGRGL 116
                  C   ++   I+ VV    +P     VS R L
Sbjct: 88  M------CVGALVHARIKHVVFGTTEPKAGSLVSARQL 119


>gi|260555185|ref|ZP_05827406.1| cytosine/adenosine deaminase [Acinetobacter baumannii ATCC 19606]
 gi|260411727|gb|EEX05024.1| cytosine/adenosine deaminase [Acinetobacter baumannii ATCC 19606]
          Length = 167

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 18/98 (18%)

Query: 31  VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEARG------ATAYVTLEPCS 80
           V  +IV    +IG G  A  G      HAE+QA+  A E  +       AT YVTLEPC+
Sbjct: 28  VGAVIVSQNKLIGAGFNAPIGLSDPTAHAEIQAIRAACESLKNYRLPEDATLYVTLEPCT 87

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDV--RVSGRGL 116
                  C   ++   I+ VV    +P     VS R L
Sbjct: 88  M------CVGALVHARIKHVVFGTTEPKAGSLVSARQL 119


>gi|326203924|ref|ZP_08193786.1| CMP/dCMP deaminase zinc-binding [Clostridium papyrosolvens DSM
           2782]
 gi|325986022|gb|EGD46856.1| CMP/dCMP deaminase zinc-binding [Clostridium papyrosolvens DSM
           2782]
          Length = 151

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 17/116 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           + +FM  A++ ++           V  ++VKDG +I  G            HAE++AL++
Sbjct: 5   NEQFMQEAIKQAK--EAYAKGESPVGAIVVKDGELIASGCNQKEEKQDVTSHAEIEALKK 62

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A ++       G   YVTLEPC+       CA  II+  I+ + +   D     +G
Sbjct: 63  AAKKLGTWRLDGCDMYVTLEPCAM------CAGAIIQSRIKTLYIGAMDKKAGAAG 112


>gi|162135105|ref|YP_001595846.1| hypothetical protein [Pseudomonas phage YuA]
 gi|161513952|emb|CAO77778.1| hypothetical protein [Pseudomonas phage YuA]
          Length = 153

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 10/78 (12%)

Query: 54  HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           HAEV AL   G  A G T Y +  PC      P C +   E G++RV   V D     +G
Sbjct: 72  HAEVNALNFLGSPATGFTLYTSF-PC-----CPNCMEAAGEAGVKRVAFPVID----YAG 121

Query: 114 RGLQWLSQKGIIVDRMME 131
           R   W+++    +D  +E
Sbjct: 122 RDPGWVAEWNQRIDEALE 139


>gi|257056391|ref|YP_003134223.1| pyrimidine reductase, riboflavin biosynthesis [Saccharomonospora
           viridis DSM 43017]
 gi|256586263|gb|ACU97396.1| pyrimidine reductase, riboflavin biosynthesis [Saccharomonospora
           viridis DSM 43017]
          Length = 258

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 18/167 (10%)

Query: 180 KNQVHLLRAQSDAILVGIGTVLAD---------DPELTCRLNGLQEHSPMRIILDPHFKL 230
           K    L R  +D ILVG GT  A+               R  GL E  P+ ++      L
Sbjct: 65  KRVFGLGRDLADVILVGAGTARAERYRGVKAHELRLERRRRLGLSELPPIAVVTG-RCDL 123

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVT 288
           + D  ++   ++ P+++ T+        A  +  ++++    +  D +  L  L  RG+ 
Sbjct: 124 TPDDPLVTDTIVPPLVLTTQRAPRHRKDALTEAGVDVVEAGEETVDPRLALAALDERGLR 183

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG------GIPSPL 329
            +  EGG  +  + + + LVD + L  + ++ G G      G+PSPL
Sbjct: 184 RVDCEGGPRLFAALVAADLVDQLCLTIAPLLAGAGADRIVTGVPSPL 230


>gi|89100955|ref|ZP_01173801.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus sp. NRRL B-14911]
 gi|89084326|gb|EAR63481.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus sp. NRRL B-14911]
          Length = 180

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 17/131 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           M ++  D  +M  A+  ++   G     P +  ++V DG +I R      +      HAE
Sbjct: 6   MNITYNDDDYMKEAIEEAK-KAGELGEVP-IGAVVVLDGKIISRAHNLRESNQNAVAHAE 63

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+EEA           A  YVTLEPC+       C+  II   I+RVV    DP    
Sbjct: 64  LLAIEEACGMLGTWRLEDAALYVTLEPCAM------CSGAIILSRIKRVVYGAADPKGGC 117

Query: 112 SGRGLQWLSQK 122
           +G  +  L  +
Sbjct: 118 AGTFMNLLQDE 128


>gi|326522122|dbj|BAK04189.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 233

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 66/158 (41%), Gaps = 47/158 (29%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYG-GCP------- 53
           S+D  FM+ A   +       S +P+    ACL+ ++GI++G G   +  GC        
Sbjct: 72  SWDDYFMAIAFLSAE-----RSKDPNRQVGACLVSQEGIILGIGYNGFPRGCSDDKLPWA 126

Query: 54  -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                            HAEV A L      A G   YVT+ PC+       CA+ II+ 
Sbjct: 127 KKSARGDPLETKYPYVVHAEVNAILNTNHASAAGQKLYVTMFPCNE------CAKIIIQS 180

Query: 96  GIRRVVVCV----DDPD-VRVSGRGLQWLSQKGIIVDR 128
           G+  V+  V    D+ D V V+   L  LS  G+ V +
Sbjct: 181 GVSEVIYFVEKRIDNSDHVYVASHNL--LSMAGVKVRK 216


>gi|169633380|ref|YP_001707116.1| putative deaminase [Acinetobacter baumannii SDF]
 gi|169152172|emb|CAP01075.1| putative deaminase [Acinetobacter baumannii]
          Length = 166

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 18/98 (18%)

Query: 31  VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEARG------ATAYVTLEPCS 80
           V  +IV    +IG G  A  G      HAE+QA+  A E  +       AT YVTLEPC+
Sbjct: 28  VGAVIVSQNKLIGAGFNAPIGLSDPTAHAEIQAIRAACESLKNYRLPEDATLYVTLEPCT 87

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDV--RVSGRGL 116
                  C   ++   I+ VV    +P     VS R L
Sbjct: 88  M------CVGALVHARIKHVVFGTTEPKAGSLVSARQL 119


>gi|15842209|ref|NP_337246.1| hypothetical protein MT2745 [Mycobacterium tuberculosis CDC1551]
 gi|13882497|gb|AAK47060.1| riboflavin-specific deaminase-related protein [Mycobacterium
           tuberculosis CDC1551]
          Length = 239

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 22/172 (12%)

Query: 165 GMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD--------PELTCRLNGLQE 216
           G +G  + P   F+     +LLR  +D I+VG+GTV  +          +   R    Q 
Sbjct: 38  GTSGAMAGPGDRFV----FNLLRELADVIVVGVGTVRIEGYSGVRMGVVQRQHRQARGQS 93

Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN--DDPVLALAFRKKNINIIYCDCRD 274
             P   I+    +L  D  +     +AP+++ T    DD    LA   +   +I C   D
Sbjct: 94  EVPQLAIVTRSGRLDRDMAVFTRTEMAPLVLTTTAVADDTRQRLAGLAE---VIACSGDD 150

Query: 275 LKK-----LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
                   L++ L  RG+  +L EGG  +  +F+   ++D + L  +  V+G
Sbjct: 151 PGTVDEAVLVSQLAARGLRRILTEGGPTLLGTFVERDVLDELCLTIAPYVVG 202


>gi|331703568|ref|YP_004400255.1| deoxycytidylate deaminase [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328802123|emb|CBW54277.1| Deoxycytidylate deaminase (dCMP deaminase) [Mycoplasma mycoides
           subsp. capri LC str. 95010]
          Length = 146

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 47  TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
             Y    HAE+ A+  +  +      YVTL PC+       CA+ II+ GI+R+    D
Sbjct: 58  NKYAYVAHAELNAIVSSRSDLSNCDLYVTLFPCNE------CAKIIIQAGIKRIYYAND 110


>gi|238793763|ref|ZP_04637384.1| tRNA-specific adenosine deaminase [Yersinia intermedia ATCC 29909]
 gi|238726827|gb|EEQ18360.1| tRNA-specific adenosine deaminase [Yersinia intermedia ATCC 29909]
          Length = 181

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 55/135 (40%), Gaps = 23/135 (17%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPS---VACLIVKDGIVIGRG----VTAYGGCPH 54
           P    D  +M  AL  +     L + N     V  ++V    VIG G    +       H
Sbjct: 14  PAEYSDEYWMQRALTLA-----LRAQNEGEVPVGAVLVLGNQVIGEGWNKSIRDNDPTAH 68

Query: 55  AEVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AE+ AL + G+  +      AT YVTLEPC        CA  +I   IRR+V   +D   
Sbjct: 69  AEIMALRQGGQVVQNYRLLEATLYVTLEPCVM------CAGAMIHSRIRRLVYGANDLKT 122

Query: 110 RVSGRGLQWLSQKGI 124
             +G  +  L   G+
Sbjct: 123 GAAGSLVDILHHPGM 137


>gi|38640200|ref|NP_944156.1| Cd dCMP deaminase [Aeromonas phage Aeh1]
 gi|33414885|gb|AAQ17928.1| Cd dCMP deaminase [Aeromonas phage Aeh1]
          Length = 182

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 17/79 (21%)

Query: 54  HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           HAE+ A+      G+   GAT Y T+ PC      P CA+ I +  I+ +V C D     
Sbjct: 91  HAEMNAILFAAHGGKSIEGATMYCTMAPC------PECAKTIAQAKIKTLVYCED----- 139

Query: 111 VSGRGLQW---LSQKGIIV 126
            +G    W   L++ GI V
Sbjct: 140 YNGSNADWAETLTRSGIKV 158


>gi|327400004|ref|YP_004340843.1| CMP/dCMP deaminase zinc-binding protein [Archaeoglobus veneficus
           SNP6]
 gi|327315512|gb|AEA46128.1| CMP/dCMP deaminase zinc-binding protein [Archaeoglobus veneficus
           SNP6]
          Length = 159

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 13/79 (16%)

Query: 54  HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           HAE  A+ +A   G    G T Y T +PC        CA+ II  GI++VV      D  
Sbjct: 81  HAEQNAIIQAAVHGVSIVGGTLYTTHQPCIM------CAKMIINAGIKKVVYGRRYAD-- 132

Query: 111 VSGRGLQWLSQKGIIVDRM 129
             GRGL++L + GI V  M
Sbjct: 133 --GRGLEFLKEAGIEVVYM 149


>gi|110833682|ref|YP_692541.1| cytidine/deoxycytidylate deaminase family protein [Alcanivorax
           borkumensis SK2]
 gi|110646793|emb|CAL16269.1| cytidine/deoxycytidylate deaminase family protein [Alcanivorax
           borkumensis SK2]
          Length = 152

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 17/120 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  +M  AL  +R           V  L+V+ G ++G+G    +TA     HAE+ A+  
Sbjct: 3   DQDWMQQALMLARQAADQGEV--PVGALVVRGGQLLGQGYNQPITANDPSAHAEIIAMRS 60

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A    +     G T YVTLEPC+       C   ++   I R+V    +P   V    LQ
Sbjct: 61  ASLAEKNYRLSGCTLYVTLEPCTM------CFGAMVHARIGRLVYGASEPRAGVCESQLQ 114


>gi|73979520|ref|XP_849027.1| PREDICTED: similar to Deoxycytidylate deaminase (dCMP deaminase)
           isoform 1 [Canis familiaris]
          Length = 178

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 10/74 (13%)

Query: 47  TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           T Y    HAE+ A + +   + +G T YV L PC+       CA+ II+ GI+ V+   D
Sbjct: 77  TKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNE------CAKLIIQAGIKEVIFMSD 130

Query: 106 ---DPDVRVSGRGL 116
              D D   + R L
Sbjct: 131 KYHDSDEMTAARLL 144


>gi|167755137|ref|ZP_02427264.1| hypothetical protein CLORAM_00641 [Clostridium ramosum DSM 1402]
 gi|167705187|gb|EDS19766.1| hypothetical protein CLORAM_00641 [Clostridium ramosum DSM 1402]
          Length = 177

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 40/80 (50%), Gaps = 15/80 (18%)

Query: 31  VACLIVKDGIVI--GRGV--TAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  +IVKDG +I  GR +  T+     HAE+ A+EEA            T YVTLEPC  
Sbjct: 51  VGAVIVKDGKIIACGRNLRETSKRATAHAEIIAIEEACRTLNSWYLDECTLYVTLEPCVM 110

Query: 82  YGRSPPCAQFIIECGIRRVV 101
                 C+  II   I+RVV
Sbjct: 111 ------CSGAIINSRIQRVV 124


>gi|34495582|ref|NP_899797.1| cytidine deaminase [Chromobacterium violaceum ATCC 12472]
 gi|34101437|gb|AAQ57806.1| probable Cytidine deaminase [Chromobacterium violaceum ATCC 12472]
          Length = 499

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)

Query: 44  RGVTAYGGCPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           + +T YG   HAE+ A+      G    G T Y T  PC +      CA+ +I  GI+RV
Sbjct: 335 KDITEYGRVVHAEMDAILNCARNGTPTLGTTLYCTTFPCHN------CAKHLIASGIKRV 388

Query: 101 V 101
           V
Sbjct: 389 V 389


>gi|218674406|ref|ZP_03524075.1| CMP/dCMP deaminase zinc-binding protein [Rhizobium etli GR56]
          Length = 157

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 56/127 (44%), Gaps = 27/127 (21%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG---------VTAYGGCPHAEVQA 59
           RFM  AL  +R   G     P +  ++V D I + R          VTA     HAE+ A
Sbjct: 11  RFMEMALEEARA-AGERGEVP-IGAVVVIDDIAVSRSGNRTRELNDVTA-----HAEIAA 63

Query: 60  L----EEAGEEA-RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           +    E  G+E   GA  YVTLEPC+       CA  I    IRR+    +DP       
Sbjct: 64  IRLACEALGQERLAGADLYVTLEPCTM------CAAAISFARIRRLYYGAEDPKGGAVDN 117

Query: 115 GLQWLSQ 121
           G+++ +Q
Sbjct: 118 GVRFYAQ 124


>gi|332376376|gb|AEE63328.1| unknown [Dendroctonus ponderosae]
          Length = 222

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 46/130 (35%)

Query: 32  ACLIVKDGIVIGRGVTAYGGCP--------------------------HAEVQA-LEEAG 64
           AC++ +D +++G G   Y G P                          HAE+ A L +  
Sbjct: 44  ACIVNEDNVIVGIG---YNGMPKNCSDDEFPWSKGSKSDLDNKYLYVCHAELNAILNKNS 100

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            + R  T YV L PC+       CA+ II+ G+++++   D         G++   Q  I
Sbjct: 101 VDVRNCTMYVGLFPCNE------CAKVIIQSGVKQIIYMSD-------KHGMK---QSTI 144

Query: 125 IVDRMMESEG 134
              RM+++ G
Sbjct: 145 ASKRMLDAAG 154


>gi|315652209|ref|ZP_07905204.1| deoxycytidylate deaminase [Eubacterium saburreum DSM 3986]
 gi|315485515|gb|EFU75902.1| deoxycytidylate deaminase [Eubacterium saburreum DSM 3986]
          Length = 164

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 11/69 (15%)

Query: 54  HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV----CVDDPD 108
           H+E+ A L   G    G+  YVTL PC+       CA+ II+ GI+ ++       D P 
Sbjct: 82  HSELNAILNYRGGSLEGSKIYVTLFPCNE------CAKAIIQAGIKTIIYEDDKYADSPS 135

Query: 109 VRVSGRGLQ 117
           VR S R L 
Sbjct: 136 VRASKRMLN 144


>gi|320106996|ref|YP_004182586.1| CMP/dCMP deaminase zinc-binding protein [Terriglobus saanensis
           SP1PR4]
 gi|319925517|gb|ADV82592.1| CMP/dCMP deaminase zinc-binding protein [Terriglobus saanensis
           SP1PR4]
          Length = 171

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 20/148 (13%)

Query: 29  PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPC 79
           P  A ++   G ++ RG    +  +    HAE+ AL  AG   E  R  G + YVTLEPC
Sbjct: 27  PVGAIVVSPTGEILSRGQNRVIRDHDPSGHAEMVALRAAGVALENYRLTGCSLYVTLEPC 86

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEG 134
           +       CA  I+   I R+V    DP     G  L+      L+ +  +V  ++  E 
Sbjct: 87  AM------CAGAILHARIARLVYAAPDPKAGACGSALEVMNHPRLNHRCEVVAGVLADEC 140

Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDN 162
              L  +   +    S +  + + S+ N
Sbjct: 141 STLLQTFFRSRRAGPSTLLEESSASETN 168


>gi|29840517|ref|NP_829623.1| cytidine/deoxycytidylate deaminase family protein [Chlamydophila
           caviae GPIC]
 gi|29834866|gb|AAP05501.1| cytidine/deoxycytidylate deaminase family protein [Chlamydophila
           caviae GPIC]
          Length = 157

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 53/123 (43%), Gaps = 20/123 (16%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG--VTAYGGCP--HAEVQALEE 62
           D  FM+ AL+ +R           V C+IVKD  +I RG   T     P  HAE+  +  
Sbjct: 6   DIFFMNQALKEAR--QAYDQDEVPVGCVIVKDNKIIARGHNTTEKFQDPTAHAEILCIGA 63

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +            Y TLEPC        CA  I    IRR+V     PD+R+ G G  
Sbjct: 64  AAQYLENWRLVDTVLYCTLEPCLM------CAGAIQLARIRRIVWAA--PDLRL-GAGGS 114

Query: 118 WLS 120
           W++
Sbjct: 115 WIN 117


>gi|300172852|ref|YP_003772017.1| ComE operon protein 2 [Leuconostoc gasicomitatum LMG 18811]
 gi|299887230|emb|CBL91198.1| ComE operon protein 2 [Leuconostoc gasicomitatum LMG 18811]
          Length = 160

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 39/167 (23%)

Query: 5   SFDARFMSAALRFS------RWHVGL----------TSTNPSVA----CLIVKDGIVIGR 44
           S+D  F++ A   S      R HVG           +  N SV+    C  V D IV G 
Sbjct: 7   SWDQYFIAQAAILSTRSTCTRLHVGAVIVQNNRIISSGYNGSVSGTPHCTDVGDLIVDGH 66

Query: 45  GVTAYGGCPHAEVQALEEAGE---EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
            + A     HAE  AL +A +      GA  YVT  PC H      C + +++ GI+++ 
Sbjct: 67  CIRAV----HAEQNALMQAAQMGISVDGAEVYVTDVPCVH------CTKLLLQAGIQKIN 116

Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE---GKIFLHAYLTRQ 145
                 D        + L+QK +I+ ++  SE    +I LH +++ +
Sbjct: 117 FM---RDYHNDSFAEELLAQKHVILKQVPFSEQTASQIDLHQFISYE 160


>gi|18309013|ref|NP_560947.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens str. 13]
 gi|18143688|dbj|BAB79737.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 143

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           V  +IVKDG +I R      T      HAE+ A+ EA  +       G   YVTLEPC  
Sbjct: 20  VGAVIVKDGEIIARAHNLKETLKDPTAHAEILAIREACNKLNNWRLHGCEMYVTLEPC-- 77

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
               P CA  I++  + ++ +   D     +G
Sbjct: 78  ----PMCAGAILQSRLSKIYIGTFDDTTGAAG 105


>gi|222153804|ref|YP_002562981.1| deaminase [Streptococcus uberis 0140J]
 gi|222114617|emb|CAR43628.1| putative deaminase [Streptococcus uberis 0140J]
          Length = 167

 Score = 37.7 bits (86), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
          FM  AL+ ++    L      + C+IVK+G +IGRG  A         HAE+ A+ EA  
Sbjct: 11 FMREALKEAK--KSLDKGEIPIGCVIVKEGRIIGRGHNAREERNQAIMHAEIMAINEANA 68

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 69 TVGNWRLLDTTLFVTIEPC 87


>gi|149182698|ref|ZP_01861165.1| probable cytidine/deoxycytidylate deaminase family protein
           [Bacillus sp. SG-1]
 gi|148849608|gb|EDL63791.1| probable cytidine/deoxycytidylate deaminase family protein
           [Bacillus sp. SG-1]
          Length = 173

 Score = 37.7 bits (86), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 21/126 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  ++V DG VI        T      HAE+ A+EEA ++        A  YVTLEPC  
Sbjct: 27  IGAVVVLDGEVIASAHNLRETTQNAVTHAELLAIEEACKKLGTWRLENAELYVTLEPC-- 84

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS------QKGIIVDRMMESEGK 135
               P C+  II   I+ VV    DP    +G  +  L       Q  ++   + E  G+
Sbjct: 85  ----PMCSGAIILSRIKTVVYGAPDPKAGCAGTLMNLLEDDRFNHQCEVVPGVLQEECGQ 140

Query: 136 IFLHAY 141
           +  H +
Sbjct: 141 LLTHFF 146


>gi|315654318|ref|ZP_07907226.1| cytidine/deoxycytidylate deaminase [Mobiluncus curtisii ATCC 51333]
 gi|315491353|gb|EFU80970.1| cytidine/deoxycytidylate deaminase [Mobiluncus curtisii ATCC 51333]
          Length = 180

 Score = 37.4 bits (85), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 17/121 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-----AYGGCPHAEV 57
           +SS + R +  A   ++   G     P  A ++  +GIV G G+       Y    HAE+
Sbjct: 29  LSSAEVRALETAYGLAQ-KAGRAGDIPVGAVVLTPEGIVAGLGLNQRENPPYDPSAHAEI 87

Query: 58  QALEEAG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL EA         +G T   TLEPC+       CA  I+   I R++    DP     
Sbjct: 88  VALREAAGRLERWNLKGCTLVATLEPCTM------CAGAIVNARISRLIFGAWDPKAGAC 141

Query: 113 G 113
           G
Sbjct: 142 G 142


>gi|168210507|ref|ZP_02636132.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens B str. ATCC 3626]
 gi|170711409|gb|EDT23591.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens B str. ATCC 3626]
          Length = 143

 Score = 37.4 bits (85), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           V  +IVKDG +I R      T      HAE+ A+ EA  +       G   YVTLEPC  
Sbjct: 20  VGAVIVKDGEIIARAHNLKETLKDPTAHAEILAIREACNKLNNWRLNGCEMYVTLEPC-- 77

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
               P CA  I++  + ++ +   D     +G
Sbjct: 78  ----PMCAGAILQSRLSKIYIGTFDDTTGAAG 105


>gi|83647619|ref|YP_436054.1| cytosine/adenosine deaminases [Hahella chejuensis KCTC 2396]
 gi|83635662|gb|ABC31629.1| Cytosine/adenosine deaminases [Hahella chejuensis KCTC 2396]
          Length = 156

 Score = 37.4 bits (85), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 9/58 (15%)

Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPC 79
          V  ++V+DG V+G G    + ++    HAE+ A+ +A   A      G+T YVTLEPC
Sbjct: 19 VGAILVRDGQVLGEGWNQPIRSHDPTAHAEISAIRKASAVAGNYRLPGSTLYVTLEPC 76


>gi|110798954|ref|YP_694504.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens ATCC 13124]
 gi|169343373|ref|ZP_02864377.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens C str. JGS1495]
 gi|182625368|ref|ZP_02953141.1| tRNA-specific adenosine deaminase [Clostridium perfringens D str.
           JGS1721]
 gi|110673601|gb|ABG82588.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens ATCC 13124]
 gi|169298459|gb|EDS80545.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens C str. JGS1495]
 gi|177909365|gb|EDT71817.1| tRNA-specific adenosine deaminase [Clostridium perfringens D str.
           JGS1721]
          Length = 143

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           V  +IVKDG +I R      T      HAE+ A+ EA  +       G   YVTLEPC  
Sbjct: 20  VGAVIVKDGEIIARAHNLKETLKDPTAHAEILAIREACNKLNNWRLHGCEMYVTLEPC-- 77

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
               P CA  I++  + ++ +   D     +G
Sbjct: 78  ----PMCAGAILQSRLSKIYIGTFDDTTGAAG 105


>gi|15609808|ref|NP_217187.1| hypothetical protein Rv2671 [Mycobacterium tuberculosis H37Rv]
 gi|31793843|ref|NP_856336.1| hypothetical protein Mb2690 [Mycobacterium bovis AF2122/97]
 gi|121638546|ref|YP_978770.1| hypothetical protein BCG_2684 [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148662512|ref|YP_001284035.1| hypothetical protein MRA_2699 [Mycobacterium tuberculosis H37Ra]
 gi|148823860|ref|YP_001288615.1| hypothetical protein TBFG_12686 [Mycobacterium tuberculosis F11]
 gi|167970105|ref|ZP_02552382.1| hypothetical protein MtubH3_19568 [Mycobacterium tuberculosis
           H37Ra]
 gi|215404634|ref|ZP_03416815.1| hypothetical protein Mtub0_13300 [Mycobacterium tuberculosis
           02_1987]
 gi|215412467|ref|ZP_03421209.1| hypothetical protein Mtub9_14005 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215428096|ref|ZP_03426015.1| hypothetical protein MtubT9_17568 [Mycobacterium tuberculosis T92]
 gi|215431611|ref|ZP_03429530.1| hypothetical protein MtubE_13253 [Mycobacterium tuberculosis
           EAS054]
 gi|215446927|ref|ZP_03433679.1| hypothetical protein MtubT_13677 [Mycobacterium tuberculosis T85]
 gi|218754408|ref|ZP_03533204.1| hypothetical protein MtubG1_13689 [Mycobacterium tuberculosis GM
           1503]
 gi|219558677|ref|ZP_03537753.1| hypothetical protein MtubT1_15772 [Mycobacterium tuberculosis T17]
 gi|224991038|ref|YP_002645727.1| hypothetical protein JTY_2678 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253798247|ref|YP_003031248.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis KZN 1435]
 gi|254232778|ref|ZP_04926105.1| bifunctional enzyme riboflavin biosynthesis protein ribD :
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Mycobacterium tuberculosis C]
 gi|254365333|ref|ZP_04981378.1| bifunctional enzyme riboflavin biosynthesis protein ribD :
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254551722|ref|ZP_05142169.1| hypothetical protein Mtube_14899 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187688|ref|ZP_05765162.1| hypothetical protein MtubCP_16894 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260201799|ref|ZP_05769290.1| hypothetical protein MtubT4_17295 [Mycobacterium tuberculosis T46]
 gi|260205981|ref|ZP_05773472.1| hypothetical protein MtubK8_16955 [Mycobacterium tuberculosis K85]
 gi|289444212|ref|ZP_06433956.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Mycobacterium tuberculosis T46]
 gi|289448325|ref|ZP_06438069.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis CPHL_A]
 gi|289553544|ref|ZP_06442754.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis KZN 605]
 gi|289570844|ref|ZP_06451071.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis T17]
 gi|289575368|ref|ZP_06455595.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis K85]
 gi|289746470|ref|ZP_06505848.1| bifunctional enzyme riboflavin biosynthesis protein RibD
           [Mycobacterium tuberculosis 02_1987]
 gi|289751321|ref|ZP_06510699.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis T92]
 gi|289754772|ref|ZP_06514150.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289758798|ref|ZP_06518176.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289762841|ref|ZP_06522219.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Mycobacterium tuberculosis GM 1503]
 gi|294994236|ref|ZP_06799927.1| hypothetical protein Mtub2_06908 [Mycobacterium tuberculosis 210]
 gi|297635279|ref|ZP_06953059.1| hypothetical protein MtubK4_14205 [Mycobacterium tuberculosis KZN
           4207]
 gi|297732275|ref|ZP_06961393.1| hypothetical protein MtubKR_14354 [Mycobacterium tuberculosis KZN
           R506]
 gi|298526140|ref|ZP_07013549.1| RibD [Mycobacterium tuberculosis 94_M4241A]
 gi|306776951|ref|ZP_07415288.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu001]
 gi|306780853|ref|ZP_07419190.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu002]
 gi|306785476|ref|ZP_07423798.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu003]
 gi|306790074|ref|ZP_07428396.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu004]
 gi|306794157|ref|ZP_07432459.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu005]
 gi|306798576|ref|ZP_07436878.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu006]
 gi|306804435|ref|ZP_07441103.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu008]
 gi|306807527|ref|ZP_07444195.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu007]
 gi|306968729|ref|ZP_07481390.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu009]
 gi|306973064|ref|ZP_07485725.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu010]
 gi|307080772|ref|ZP_07489942.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu011]
 gi|307085364|ref|ZP_07494477.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu012]
 gi|313659608|ref|ZP_07816488.1| hypothetical protein MtubKV_14359 [Mycobacterium tuberculosis KZN
           V2475]
 gi|1550712|emb|CAB02325.1| POSSIBLE BIFUNCTIONAL ENZYME RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBD:
           DIAMINOHYDROXYPHOSPHORIBOSYLAMINOPYRIMIDINE DEAMINASE
           (RIBOFLAVIN-SPECIFIC DEAMINASE) +
           5-AMINO-6-(5-PHOSPHORIBOSYLAMINO)URACIL REDUCTASE (HTP
           REDUCTASE) [Mycobacterium tuberculosis H37Rv]
 gi|31619437|emb|CAD94875.1| POSSIBLE BIFUNCTIONAL ENZYME RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBD:
           DIAMINOHYDROXYPHOSPHORIBOSYLAMINOPYRIMIDINE DEAMINASE
           (RIBOFLAVIN-SPECIFIC DEAMINASE) +
           5-AMINO-6-(5-PHOSPHORIBOSYLAMINO)URACIL REDUCTASE (HTP
           REDUCTASE) [Mycobacterium bovis AF2122/97]
 gi|121494194|emb|CAL72672.1| Possible bifunctional enzyme riboflavin biosynthesis protein ribD:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124601837|gb|EAY60847.1| bifunctional enzyme riboflavin biosynthesis protein ribD :
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Mycobacterium tuberculosis C]
 gi|134150846|gb|EBA42891.1| bifunctional enzyme riboflavin biosynthesis protein ribD :
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148506664|gb|ABQ74473.1| bifunctional enzyme riboflavin biosynthesis protein RibD
           [Mycobacterium tuberculosis H37Ra]
 gi|148722387|gb|ABR07012.1| bifunctional enzyme riboflavin biosynthesis protein ribD:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Mycobacterium tuberculosis F11]
 gi|224774153|dbj|BAH26959.1| putative hypothetical protein [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253319751|gb|ACT24354.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis KZN 1435]
 gi|289417131|gb|EFD14371.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Mycobacterium tuberculosis T46]
 gi|289421283|gb|EFD18484.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis CPHL_A]
 gi|289438176|gb|EFD20669.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis KZN 605]
 gi|289539799|gb|EFD44377.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis K85]
 gi|289544598|gb|EFD48246.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis T17]
 gi|289686998|gb|EFD54486.1| bifunctional enzyme riboflavin biosynthesis protein RibD
           [Mycobacterium tuberculosis 02_1987]
 gi|289691908|gb|EFD59337.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis T92]
 gi|289695359|gb|EFD62788.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289710347|gb|EFD74363.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Mycobacterium tuberculosis GM 1503]
 gi|289714362|gb|EFD78374.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298495934|gb|EFI31228.1| RibD [Mycobacterium tuberculosis 94_M4241A]
 gi|308214608|gb|EFO74007.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu001]
 gi|308326253|gb|EFP15104.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu002]
 gi|308329858|gb|EFP18709.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu003]
 gi|308333424|gb|EFP22275.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu004]
 gi|308337491|gb|EFP26342.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu005]
 gi|308341164|gb|EFP30015.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu006]
 gi|308346123|gb|EFP34974.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu007]
 gi|308348919|gb|EFP37770.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu008]
 gi|308353691|gb|EFP42542.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu009]
 gi|308357538|gb|EFP46389.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu010]
 gi|308361486|gb|EFP50337.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu011]
 gi|308365093|gb|EFP53944.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu012]
 gi|323718731|gb|EGB27892.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis CDC1551A]
 gi|326904285|gb|EGE51218.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis W-148]
 gi|328458020|gb|AEB03443.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis KZN 4207]
          Length = 258

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 22/172 (12%)

Query: 165 GMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD--------PELTCRLNGLQE 216
           G +G  + P   F+     +LLR  +D I+VG+GTV  +          +   R    Q 
Sbjct: 57  GTSGAMAGPGDRFV----FNLLRELADVIVVGVGTVRIEGYSGVRMGVVQRQHRQARGQS 112

Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN--DDPVLALAFRKKNINIIYCDCRD 274
             P   I+    +L  D  +     +AP+++ T    DD    LA   +   +I C   D
Sbjct: 113 EVPQLAIVTRSGRLDRDMAVFTRTEMAPLVLTTTAVADDTRQRLAGLAE---VIACSGDD 169

Query: 275 LKK-----LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
                   L++ L  RG+  +L EGG  +  +F+   ++D + L  +  V+G
Sbjct: 170 PGTVDEAVLVSQLAARGLRRILTEGGPTLLGTFVERDVLDELCLTIAPYVVG 221


>gi|226330324|ref|ZP_03805842.1| hypothetical protein PROPEN_04238 [Proteus penneri ATCC 35198]
 gi|225201119|gb|EEG83473.1| hypothetical protein PROPEN_04238 [Proteus penneri ATCC 35198]
          Length = 177

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 2/53 (3%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           +L+ ++T L  +G   L ++GG  V  +F+N  L+D +I+ R  I++G GG P
Sbjct: 95  ELQNIITELNAKGFNELYIDGGVTV-QNFLNEDLIDQMIITRFPILLG-GGTP 145


>gi|172056061|ref|YP_001812521.1| CMP/dCMP deaminase zinc-binding [Exiguobacterium sibiricum 255-15]
 gi|171988582|gb|ACB59504.1| CMP/dCMP deaminase zinc-binding [Exiguobacterium sibiricum 255-15]
          Length = 169

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 39/86 (45%), Gaps = 15/86 (17%)

Query: 31  VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           + C+IVK   VI  G     T +    HAE+ A+EEA  +       G   YVTLEPC  
Sbjct: 27  IGCVIVKGDEVIATGYNHRETNHQATAHAELLAIEEACNKLANWRLEGCELYVTLEPC-- 84

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDP 107
               P CA  I+   I  V+    DP
Sbjct: 85  ----PMCAGAIMLSRIEHVIFGAVDP 106


>gi|307721944|ref|YP_003893084.1| CMP/dCMP deaminase zinc-binding protein [Sulfurimonas autotrophica
           DSM 16294]
 gi|306980037|gb|ADN10072.1| CMP/dCMP deaminase zinc-binding protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 145

 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 42/101 (41%), Gaps = 39/101 (38%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP---------------------------HAEVQALEEA 63
           V  +IVKDG ++  G   Y G P                           HAE+ A+  A
Sbjct: 25  VGAVIVKDGRILSTG---YNGTPAGYTNCCDHWNDEYTKEHHEWSKTYEIHAEMNAIIWA 81

Query: 64  GEEA---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
             +      AT YVTLEPCS       C++ +I  GI+R+V
Sbjct: 82  ARKGISIEDATIYVTLEPCS------ECSKNLIASGIKRIV 116


>gi|331092011|ref|ZP_08340842.1| hypothetical protein HMPREF9477_01485 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402212|gb|EGG81783.1| hypothetical protein HMPREF9477_01485 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 155

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 17/105 (16%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D ++M  A++ ++    +      + C+IV +  +I RG     T      HAE+ A+++
Sbjct: 4   DEKYMREAIKQAKKAYEINEV--PIGCVIVCEDKIISRGYNRRTTDKNPLAHAEMIAIKK 61

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           A ++         T YVTLEPC        C+  I++  +++VVV
Sbjct: 62  ASKKVGDWRLEDCTMYVTLEPCQM------CSGAIVQSRMKKVVV 100


>gi|311106622|ref|YP_003979475.1| tRNA-specific adenosine deaminase [Achromobacter xylosoxidans A8]
 gi|310761311|gb|ADP16760.1| tRNA-specific adenosine deaminase [Achromobacter xylosoxidans A8]
          Length = 163

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 16/121 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57
           P ++ DA FM  AL+ ++    +    P  A ++   G ++GRG    +  +    HAE+
Sbjct: 6   PWTAQDASFMELALQEAQAAYDIGEV-PVGALVVSAQGDILGRGYNRTIIDHDPTAHAEI 64

Query: 58  QALEEAG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL  A    E  R  G T YVTLEPC        C   ++   + RVV    DP     
Sbjct: 65  VALRGAARALENYRLPGITVYVTLEPCVM------CIGAMLHARLARVVFGAYDPKTGAC 118

Query: 113 G 113
           G
Sbjct: 119 G 119


>gi|282856020|ref|ZP_06265309.1| ComE operon protein 2 [Pyramidobacter piscolens W5455]
 gi|282586139|gb|EFB91418.1| ComE operon protein 2 [Pyramidobacter piscolens W5455]
          Length = 180

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 36/81 (44%), Gaps = 10/81 (12%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPP 87
             CL  K GI  G       G  HAE+ A+ +A   G    GA+ Y T  PCS       
Sbjct: 58  TGCLRTKLGIPSGERHEICRG-SHAEMNAIAQAASVGVSTAGASLYCTHSPCSF------ 110

Query: 88  CAQFIIECGIRRVVVCVDDPD 108
           C + II  GIRRVV     PD
Sbjct: 111 CTKAIINAGIRRVVYLYSYPD 131


>gi|213157131|ref|YP_002319176.1| tRNA-specific adenosine deaminase [Acinetobacter baumannii AB0057]
 gi|215483589|ref|YP_002325810.1| tRNA-specific adenosine deaminase [Acinetobacter baumannii
           AB307-0294]
 gi|239502187|ref|ZP_04661497.1| putative deaminase [Acinetobacter baumannii AB900]
 gi|301345934|ref|ZP_07226675.1| putative deaminase [Acinetobacter baumannii AB056]
 gi|213056291|gb|ACJ41193.1| tRNA-specific adenosine deaminase [Acinetobacter baumannii AB0057]
 gi|213987060|gb|ACJ57359.1| tRNA-specific adenosine deaminase [Acinetobacter baumannii
           AB307-0294]
          Length = 158

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 18/98 (18%)

Query: 31  VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEARG------ATAYVTLEPCS 80
           V  +IV    +IG G  A  G      HAE+QA+  A E  +       AT YVTLEPC+
Sbjct: 19  VGAVIVSQNKLIGAGFNAPIGLSDPTAHAEIQAIRAACESLKNYRLPEDATLYVTLEPCT 78

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDV--RVSGRGL 116
                  C   ++   I+ VV    +P     VS R L
Sbjct: 79  M------CVGALVHARIKHVVFGTTEPKAGSLVSARQL 110


>gi|167748501|ref|ZP_02420628.1| hypothetical protein ANACAC_03245 [Anaerostipes caccae DSM 14662]
 gi|167652493|gb|EDR96622.1| hypothetical protein ANACAC_03245 [Anaerostipes caccae DSM 14662]
          Length = 170

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 12/97 (12%)

Query: 47  TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           T Y    HAE+ A L   G    GA  YVTL PC+       CA+ II+ G++ V+   D
Sbjct: 81  TKYFYVCHAELNAILNYGGGSLYGARVYVTLFPCNE------CAKAIIQSGMKEVIYMQD 134

Query: 106 ---DPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
              D D+ V+ + +      G+   +    +  I LH
Sbjct: 135 KYADDDMTVASKRM--FDMAGVKYRKFEPKDQTIELH 169


>gi|160931212|ref|ZP_02078614.1| hypothetical protein CLOLEP_00049 [Clostridium leptum DSM 753]
 gi|156869767|gb|EDO63139.1| hypothetical protein CLOLEP_00049 [Clostridium leptum DSM 753]
          Length = 163

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 41/92 (44%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVI--GRGVTAYG--GCPHAEVQALEEA-----GEEARGATAYVTLEPCSH 81
           V  +IVKDG++I  GR     G     HAE++A++ A     G        YVTLEPC  
Sbjct: 33  VGAVIVKDGVLISAGRNRRELGKNALYHAELEAIDGACKALGGWRLWQCDLYVTLEPC-- 90

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
               P C   II   IRR+     DP     G
Sbjct: 91  ----PMCTGAIINARIRRLCYGAKDPKAGSCG 118


>gi|56961816|ref|YP_173538.1| cytosine/adenosine deaminase [Bacillus clausii KSM-K16]
 gi|56908050|dbj|BAD62577.1| cytosine/adenosine deaminase [Bacillus clausii KSM-K16]
          Length = 165

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 15/101 (14%)

Query: 31  VACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  +I+K+G +I          +    HAE+ A+E+A ++       G T YVTLEPC  
Sbjct: 28  IGAVIIKEGKLIASAYNLREANHSALAHAELLAIEQANKKLGAWRLEGCTLYVTLEPC-- 85

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
               P CA  I++  I  VV    D     +G  +  L ++
Sbjct: 86  ----PMCAGAIVQSRIPTVVYGAQDQKAGCAGTLMNLLQEQ 122


>gi|325981113|ref|YP_004293515.1| CMP/dCMP deaminase zinc-binding protein [Nitrosomonas sp. AL212]
 gi|325530632|gb|ADZ25353.1| CMP/dCMP deaminase zinc-binding protein [Nitrosomonas sp. AL212]
          Length = 152

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V+ G+++GRG    ++      HAE+ A+ +AG             YVTLEPC  
Sbjct: 19  VGAVVVQHGVIVGRGYNRPISTADPSAHAEIMAMRDAGGHMANYRLLDCVLYVTLEPCVM 78

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 C   I    I+R+V    DP     G
Sbjct: 79  ------CIGAIFHARIQRLVYAAADPKTGACG 104


>gi|225456327|ref|XP_002283817.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297734422|emb|CBI15669.3| unnamed protein product [Vitis vinifera]
          Length = 229

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 32/100 (32%)

Query: 32  ACLIVKDGIVIGRGVTAYG-GCP------------------------HAEVQA-LEEAGE 65
           ACL+ ++G+++G G   +  GC                         HAEV A L     
Sbjct: 95  ACLVSQNGVILGIGYNGFPRGCSDDKLPWAKKSKTGDPLETKYPYVCHAEVNAILNTNHA 154

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
            A G   YVT+ PC+       CA+ II+ G+  V+  V+
Sbjct: 155 SAAGQRLYVTMFPCNE------CAKIIIQSGVSEVIYFVE 188


>gi|111221547|ref|YP_712341.1| hypothetical protein FRAAL2113 [Frankia alni ACN14a]
 gi|111149079|emb|CAJ60762.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase (Riboflavin
           biosynthesis protein ribD) [Frankia alni ACN14a]
          Length = 282

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 24/172 (13%)

Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD-------PELTCRLN--GLQEHS 218
           G  S P+ G   +    LLR  SD +LVG GTV  ++       PE   R    GL    
Sbjct: 85  GGRSGPLGGEADRRVFQLLRWLSDVVLVGAGTVRHENYGPVIVPPERRDRRQAAGLAAVP 144

Query: 219 PMRII-----LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC--D 271
           P+ +I     LDP  +L  D+++       P+++  +   P    A       ++ C   
Sbjct: 145 PIAVITATAGLDPGARL-FDAEV------RPIVLTCDAAPPAKRQAL-AAVAEVVLCGET 196

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
             D    L  L  RG+T +L EGG  +      + L+D + L  + ++ G G
Sbjct: 197 TVDPAAALAALAERGMTRVLTEGGPLLHAQLAGAGLLDELCLTVAPMLAGPG 248


>gi|295102170|emb|CBK99715.1| Deoxycytidylate deaminase [Faecalibacterium prausnitzii L2-6]
          Length = 159

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 55/142 (38%), Gaps = 46/142 (32%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53
           ++D  FM  AL        + S +PS    AC++  +  ++  G   Y G P        
Sbjct: 8   NWDEYFMGIALL-----TAMRSKDPSSQVGACIVSPENKILSLG---YNGMPIGCDDDAM 59

Query: 54  -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                            HAE+ A L  A    +GA  YVTL PC+       C + II+ 
Sbjct: 60  PWEREGEPLNTKYMYVCHAELNAILNSAHNNLKGARVYVTLFPCNE------CTKAIIQS 113

Query: 96  GIRRVVVCVD---DPDVRVSGR 114
           GI  VV   D   D D  V+ R
Sbjct: 114 GIAEVVYYSDKYHDTDSSVAAR 135


>gi|261855229|ref|YP_003262512.1| CMP/dCMP deaminase zinc-binding protein [Halothiobacillus
           neapolitanus c2]
 gi|261835698|gb|ACX95465.1| CMP/dCMP deaminase zinc-binding protein [Halothiobacillus
           neapolitanus c2]
          Length = 153

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 57/160 (35%), Gaps = 25/160 (15%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
           SS D +F+  AL     ++        V  ++V+ G VI  G  A         HAE+ A
Sbjct: 5   SSVDRQFIQQAL--DEANLAAADGEVPVGAVVVRQGKVIATGRNAPIRLNDPSAHAEILA 62

Query: 60  LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           L  AG           T YVTLEPC      P C   I    I RVV    DP     G 
Sbjct: 63  LRAAGMALANYRLDDCTLYVTLEPC------PMCMAAISHARIARVVFAAPDPRAGACGG 116

Query: 115 GLQ-----WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            +      W     ++     E E    L  +     EKR
Sbjct: 117 AIDLNRAPWHHHSVVVDTGPCEQEAAELLRHFFQ---EKR 153


>gi|256372768|ref|YP_003110592.1| CMP/dCMP deaminase zinc-binding [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256009352|gb|ACU54919.1| CMP/dCMP deaminase zinc-binding [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 156

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 17/114 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQ 58
           +S+ D R++  A   +      T+  P V  ++V+ G V+G      +       HAE+ 
Sbjct: 2   LSADDRRWLDVAFGLAE-DAARTAEVP-VGAVVVRSGRVLGARHNETIERRSSLAHAELL 59

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           AL +A  +A      GA  YVTLEPC+       CA  ++    RRVV    DP
Sbjct: 60  ALSDALADAGDGYVLGADVYVTLEPCAM------CAGALVLARARRVVFAAWDP 107


>gi|255659416|ref|ZP_05404825.1| tRNA-specific adenosine deaminase [Mitsuokella multacida DSM 20544]
 gi|260848379|gb|EEX68386.1| tRNA-specific adenosine deaminase [Mitsuokella multacida DSM 20544]
          Length = 169

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 51/109 (46%), Gaps = 16/109 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
           DA +M  AL  ++    L    P  A L+ ++G V+ RG       +    HAE+ A+ E
Sbjct: 4   DAYYMRLALEEAQKAYDLEEV-PIGAVLVDREGEVVARGHNMREVWHDATAHAEMIAIRE 62

Query: 63  A-GEEAR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           A  +E R    G T YVT+EPC      P CA  I+   + RVV    D
Sbjct: 63  ACAKEGRWRLSGLTLYVTIEPC------PMCAGAIVMSRVDRVVYGSTD 105


>gi|157157409|ref|YP_001463881.1| tRNA-specific adenosine deaminase [Escherichia coli E24377A]
 gi|193064070|ref|ZP_03045155.1| tRNA-specific adenosine deaminase [Escherichia coli E22]
 gi|194427252|ref|ZP_03059802.1| tRNA-specific adenosine deaminase [Escherichia coli B171]
 gi|293446913|ref|ZP_06663335.1| yfhC [Escherichia coli B088]
 gi|309794388|ref|ZP_07688811.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 145-7]
 gi|157079439|gb|ABV19147.1| tRNA-specific adenosine deaminase [Escherichia coli E24377A]
 gi|192929305|gb|EDV82914.1| tRNA-specific adenosine deaminase [Escherichia coli E22]
 gi|194414573|gb|EDX30845.1| tRNA-specific adenosine deaminase [Escherichia coli B171]
 gi|195183132|dbj|BAG66679.1| putative deaminase [Escherichia coli O111:H-]
 gi|291323743|gb|EFE63171.1| yfhC [Escherichia coli B088]
 gi|308121844|gb|EFO59106.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 145-7]
 gi|323159237|gb|EFZ45226.1| tRNA-specific adenosine deaminase [Escherichia coli E128010]
          Length = 178

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++V +  VIG G    +  +    HAE+ AL + G   +  R   AT YVTLEPC  
Sbjct: 41  VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 99

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  +I   I RVV    D     +G  +  L   G+
Sbjct: 100 -----MCAGAMIHSRIGRVVFGAHDAKTGAAGSLMDVLHHPGM 137


>gi|114705782|ref|ZP_01438685.1| CMP/dCMP deaminase, zinc-binding protein [Fulvimarina pelagi
           HTCC2506]
 gi|114538628|gb|EAU41749.1| CMP/dCMP deaminase, zinc-binding protein [Fulvimarina pelagi
           HTCC2506]
          Length = 148

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 49/122 (40%), Gaps = 17/122 (13%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA- 63
           RFM  AL  +R     T     V  +IV+DG +I +       A     HAE+ A+  A 
Sbjct: 4   RFMDEALEEARR--AATRGEVPVGAVIVRDGEIIAKAGNETRAAKDPTAHAELLAIRRAC 61

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                E       YVTLEPC+       CA  I    IRR+     DP       G ++ 
Sbjct: 62  LALEAERLTDCDLYVTLEPCAM------CAGAISFARIRRLYFGAADPKGGAVENGARFF 115

Query: 120 SQ 121
           SQ
Sbjct: 116 SQ 117


>gi|317471969|ref|ZP_07931301.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Anaerostipes sp. 3_2_56FAA]
 gi|316900373|gb|EFV22355.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Anaerostipes sp. 3_2_56FAA]
          Length = 170

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 10/74 (13%)

Query: 47  TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           T Y    HAE+ A L   G    GA  YVTL PC+       CA+ II+ G++ V+   D
Sbjct: 81  TKYFYVCHAELNAILNYGGGSLYGARVYVTLFPCNE------CAKAIIQSGMKEVIYMQD 134

Query: 106 ---DPDVRVSGRGL 116
              D D+ V+ + +
Sbjct: 135 KYADDDMTVASKKM 148


>gi|256848137|ref|ZP_05553581.1| tRNA-adenosine deaminase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715197|gb|EEU30174.1| tRNA-adenosine deaminase [Lactobacillus coleohominis 101-4-CHN]
          Length = 169

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 48/116 (41%), Gaps = 17/116 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
           MP  +  A FM AA+  +  H         +  +IVKDG +IG G            HAE
Sbjct: 3   MPNYTEPADFMRAAI--NEAHQAELLGEVPIGAVIVKDGQIIGAGHNMREKYQQSIYHAE 60

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           + A+ EA +            YVTLEPC        C+  II   +R+V     DP
Sbjct: 61  ILAIMEACDALHSWRLEDCDLYVTLEPCI------MCSGAIIHSRLRQVYYAAPDP 110


>gi|150387879|ref|YP_001317928.1| CMP/dCMP deaminase, zinc-binding [Alkaliphilus metalliredigens
           QYMF]
 gi|149947741|gb|ABR46269.1| CMP/dCMP deaminase, zinc-binding [Alkaliphilus metalliredigens
           QYMF]
          Length = 151

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 17/126 (13%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALE 61
            +A +MS AL  ++    L      +  +I+++  VI        + +    HAE+ A++
Sbjct: 1   MEAYYMSLALEEAKKAYELGEV--PIGAIILRENKVIAAAHNLRESHHDATAHAEIIAIQ 58

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A     G     +T +VT+EPC      P CA  I++  I RVV+   DP     G  +
Sbjct: 59  AACRRLGGWRLTNSTLFVTIEPC------PMCAGAILQSRIDRVVIGAMDPKAGACGSII 112

Query: 117 QWLSQK 122
             L+  
Sbjct: 113 NLLNNN 118


>gi|20089035|ref|NP_615110.1| dCMP deaminase [Methanosarcina acetivorans C2A]
 gi|19913892|gb|AAM03590.1| dCMP deaminase [Methanosarcina acetivorans C2A]
          Length = 150

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 13/77 (16%)

Query: 54  HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           HAE  A+ +A   G    GAT Y T +PC+       CA+ II   I++VV    DPD  
Sbjct: 79  HAEQNAIIQAAIHGVSIAGATIYCTQQPCTL------CAKMIINSNIKKVVYSTPDPDT- 131

Query: 111 VSGRGLQWLSQKGIIVD 127
                L++    G+ V+
Sbjct: 132 ---DSLEFFRSAGVEVE 145


>gi|9631183|ref|NP_047965.1| gp20 [Streptomyces phage phiC31]
 gi|3947493|emb|CAA07144.1| gp20 [Streptomyces phage phiC31]
          Length = 117

 Score = 37.4 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 25/56 (44%), Positives = 26/56 (46%), Gaps = 9/56 (16%)

Query: 49  YGGC--PHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           Y  C   HAE  A+  A   E  GAT Y T EPC      P C   I   GIRRVV
Sbjct: 60  YANCVADHAERNAIRHAPSAELAGATLYTTREPC------PACWTLIRAAGIRRVV 109


>gi|108758559|ref|YP_630178.1| cytidine and deoxycytidylate deaminase zinc-binding
           domain-containing protein [Myxococcus xanthus DK 1622]
 gi|108462439|gb|ABF87624.1| cytidine and deoxycytidylate deaminase zinc-binding domain protein
           [Myxococcus xanthus DK 1622]
          Length = 154

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 17/116 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           D  FM  AL  +R    L      V  + V +G V+G G            HAE+ A++ 
Sbjct: 3   DEAFMQQALSLAREAAELGEV--PVGAVAVLNGEVVGAGFNRREVDRNPLAHAEMLAMDA 60

Query: 63  AGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A  +       G T YVTLEPC+       CA  +++  + R+V    DP     G
Sbjct: 61  AARKIGAWRLSGVTLYVTLEPCAM------CAGGLVQSRVTRLVFGAFDPKAGAVG 110


>gi|220927719|ref|YP_002504628.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulolyticum H10]
 gi|219998047|gb|ACL74648.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulolyticum H10]
          Length = 145

 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 38/79 (48%), Gaps = 13/79 (16%)

Query: 54  HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           HAE  A+ +A   G    GAT YVT +PC        CA+  I  GI R+V   D PD  
Sbjct: 77  HAEQNAIVQAAYSGTSVSGATLYVTNQPCV------LCAKLAINAGIVRIVFNGDYPD-- 128

Query: 111 VSGRGLQWLSQKGIIVDRM 129
                +  LS+ GI V R+
Sbjct: 129 --ELSMTLLSEAGIEVVRL 145


>gi|313115327|ref|ZP_07800802.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622358|gb|EFQ05838.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 159

 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 34/72 (47%), Gaps = 10/72 (13%)

Query: 47  TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           T Y    HAE+ A L  A    +GA  YVTL PC+       C + II+ GI  VV   D
Sbjct: 70  TKYMYVCHAELNAILNSAHNNLKGARVYVTLFPCNE------CTKAIIQSGIAEVVYYGD 123

Query: 106 ---DPDVRVSGR 114
              D D  V+ R
Sbjct: 124 KYHDSDSSVAAR 135


>gi|294795071|ref|ZP_06760206.1| LOW QUALITY PROTEIN: cytidine/deoxycytidylate deaminase family
           protein [Veillonella sp. 3_1_44]
 gi|294454433|gb|EFG22807.1| LOW QUALITY PROTEIN: cytidine/deoxycytidylate deaminase family
           protein [Veillonella sp. 3_1_44]
          Length = 164

 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 47/115 (40%), Gaps = 17/115 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
           M   S D  FM  AL  +  H         +  ++V++  +I R        +    HAE
Sbjct: 13  MDERSRDEYFMGFALEEA--HKAYALGEIPIGAILVQNNTIISRHHNRRELDHDATAHAE 70

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           V  + EA +  +     G T YVT+EPC      P CA  II   I RVV    D
Sbjct: 71  VLVIREACDVLKRWRLTGCTLYVTIEPC------PMCAGAIINSRIDRVVYGASD 119


>gi|283477539|emb|CAY73455.1| tRNA-specific adenosine deaminase [Erwinia pyrifoliae DSM 12163]
          Length = 157

 Score = 37.4 bits (85), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 52/125 (41%), Gaps = 21/125 (16%)

Query: 11  MSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64
           M  ALR +R  W  G       V  ++V DG  IG G    +  +    HAE+ AL + G
Sbjct: 1   MRHALRLARRAWDEG----EVPVGAVLVLDGQAIGEGWNRPIGQHDPTAHAEMMALRQGG 56

Query: 65  ---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
              E  R    T YVTLEPC        CA  +I   + R+V    D     +G  L  L
Sbjct: 57  KVIENYRLLDTTLYVTLEPCV------MCAGAMIHGRVGRLVYGARDAKTGAAGSLLDVL 110

Query: 120 SQKGI 124
              G+
Sbjct: 111 GHAGM 115


>gi|323978411|gb|EGB73496.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Escherichia coli TW10509]
          Length = 167

 Score = 37.4 bits (85), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++V +  VIG G    +  +    HAE+ AL + G   +  R   AT YVTLEPC  
Sbjct: 30  VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 88

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  +I   I RVV    D     +G  +  L   G+
Sbjct: 89  -----MCAGAMIHSRISRVVFGARDAKTGAAGSLMDVLHHPGM 126


>gi|193077204|gb|ABO11996.2| putative deaminase [Acinetobacter baumannii ATCC 17978]
          Length = 158

 Score = 37.4 bits (85), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 18/98 (18%)

Query: 31  VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEARG------ATAYVTLEPCS 80
           V  +IV    +IG G  A  G      HAE+QA+  A E  +       AT YVTLEPC+
Sbjct: 19  VGAVIVSQNKLIGAGFNAPIGLSDPTAHAEIQAIRAACESLKNYRLPEDATLYVTLEPCT 78

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDV--RVSGRGL 116
                  C   ++   I+ VV    +P     VS R L
Sbjct: 79  M------CVGALVHARIKHVVFGTTEPKAGSLVSARQL 110


>gi|237736005|ref|ZP_04566486.1| deoxycytidylate deaminase [Fusobacterium mortiferum ATCC 9817]
 gi|229421886|gb|EEO36933.1| deoxycytidylate deaminase [Fusobacterium mortiferum ATCC 9817]
          Length = 163

 Score = 37.4 bits (85), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 42/131 (32%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP--------- 53
           +D  FM  AL       G  S +P+    AC++ ++  ++G G   Y G P         
Sbjct: 9   WDEYFMGVALL-----SGKRSKDPNTQVGACIVNEEKKIVGVG---YNGLPIGCSDDEYP 60

Query: 54  ----------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                           HAE+ A+  + +  +  T YV L PC        C++ II+ GI
Sbjct: 61  WEREGEFLETKYPFVCHAELNAILNSTKSLKNCTIYVALFPCHE------CSKAIIQSGI 114

Query: 98  RRVVVCVDDPD 108
           R +V   D  D
Sbjct: 115 RELVYLSDKYD 125


>gi|163758411|ref|ZP_02165499.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Hoeflea
           phototrophica DFL-43]
 gi|162284700|gb|EDQ34983.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Hoeflea
           phototrophica DFL-43]
          Length = 148

 Score = 37.4 bits (85), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 45/105 (42%), Gaps = 25/105 (23%)

Query: 31  VACLIVKDGIVIGRG---------VTAYGGCPHAEVQALEEAG-----EEARGATAYVTL 76
           V  +IV DG VI R          VTA     HAE+ A+ +A      E   GA  YVTL
Sbjct: 25  VGAVIVLDGEVIARAGNRTRELNDVTA-----HAEILAIRQAAMQLSSERLIGADLYVTL 79

Query: 77  EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           EPC+       CA  I    +RR+    DD        G+++  Q
Sbjct: 80  EPCTM------CAAAISFARLRRLYYAADDEKGGAVTSGVRFFDQ 118


>gi|313902173|ref|ZP_07835582.1| CMP/dCMP deaminase zinc-binding [Thermaerobacter subterraneus DSM
           13965]
 gi|313467573|gb|EFR63078.1| CMP/dCMP deaminase zinc-binding [Thermaerobacter subterraneus DSM
           13965]
          Length = 186

 Score = 37.4 bits (85), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 63/151 (41%), Gaps = 45/151 (29%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNP--SVACLIVKDGIVIGRGVTAYGGCP---------- 53
           +DA FM  A   +R      ST P   V  ++V+D  ++    T Y G P          
Sbjct: 44  WDAYFMELAEVVAR-----RSTCPRRHVGAVLVRDRRILA---TGYNGAPPGFPHCTEAG 95

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE  A+ +A   G   +G+T Y T  PC H      CA+ +I  G+ 
Sbjct: 96  CLMQDGHCVRTIHAEANAILQAALHGVTVKGSTLYTTATPCLH------CAKLLIGAGVV 149

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           RVV     PD     R +++L + GI ++ M
Sbjct: 150 RVVYRDWYPDP----RAVEFLERAGIPLEPM 176


>gi|282849118|ref|ZP_06258503.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Veillonella parvula ATCC 17745]
 gi|282580822|gb|EFB86220.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Veillonella parvula ATCC 17745]
          Length = 181

 Score = 37.4 bits (85), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 47/115 (40%), Gaps = 17/115 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
           M   S D  FM  AL  +  H         +  ++V++  +I R        +    HAE
Sbjct: 13  MDERSRDEYFMGFALEEA--HKAYALGEIPIGAILVQNNTIISRHHNRRELDHDATAHAE 70

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           V  + EA +  +     G T YVT+EPC      P CA  II   I RVV    D
Sbjct: 71  VLVIREACDVLKRWRLTGCTLYVTIEPC------PMCAGAIINSRIDRVVYGASD 119


>gi|289547972|ref|YP_003472960.1| CMP/dCMP deaminase zinc-binding protein [Thermocrinis albus DSM
           14484]
 gi|289181589|gb|ADC88833.1| CMP/dCMP deaminase zinc-binding protein [Thermocrinis albus DSM
           14484]
          Length = 156

 Score = 37.4 bits (85), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 15/98 (15%)

Query: 21  HVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV----QALEEAGEE-ARGAT 71
           H         V C++VK+G +I R     +       HAE+    +AL++ GE    G T
Sbjct: 17  HRAFRKGEIPVGCVVVKEGRIIARAHNRTIALKDPTAHAEILAIRKALKKLGESFLYGCT 76

Query: 72  AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
            YVTLEPC+       CA  ++   + +V+    D  +
Sbjct: 77  LYVTLEPCAM------CAYALVLARVDKVIFLAQDEKL 108


>gi|51246206|ref|YP_066090.1| cytosine deaminase [Desulfotalea psychrophila LSv54]
 gi|50877243|emb|CAG37083.1| probable cytosine deaminase [Desulfotalea psychrophila LSv54]
          Length = 145

 Score = 37.4 bits (85), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 16/102 (15%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64
           +F + A+  +R   G+ +    +  ++V DG ++GRG    V       HAE+  LE AG
Sbjct: 3   KFFAVAVAEAR--KGMATGGIPIGSVLVIDGQIVGRGHNQRVQRGSVVLHAEMDCLENAG 60

Query: 65  E----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                + R AT Y TL PC        C+  ++  GI RVV+
Sbjct: 61  RIKAADYRRATLYSTLSPCDM------CSGAVLLYGIPRVVI 96


>gi|312215394|emb|CBX95346.1| similar to cytosine deaminase [Leptosphaeria maculans]
          Length = 152

 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 49/109 (44%), Gaps = 18/109 (16%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTN-PSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57
           +SS D  F  AAL  +R   G +    P  ACL+   G ++GRG    +       HAE+
Sbjct: 1   MSSADIGFQ-AALEEAR--TGSSEGGLPIGACLVSAQGKILGRGHNMRIQRGSATLHAEI 57

Query: 58  QALEEAG----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
            ALE AG       + AT Y TL PC        C    I   ++RVV+
Sbjct: 58  SALERAGRLPASAYQDATMYTTLSPCDM------CTGACILYKVKRVVI 100


>gi|197285737|ref|YP_002151609.1| tRNA-specific adenosine deaminase [Proteus mirabilis HI4320]
 gi|194683224|emb|CAR43904.1| tRNA-specific adenosine deaminase [Proteus mirabilis HI4320]
          Length = 176

 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V +  +I +G    +       HAE+ AL + G+  +      AT Y+TLEPC  
Sbjct: 29  VGAVLVAENKIIAKGWNHSIIDNDPTAHAEIMALRKGGKHLQNYRLLDATLYITLEPCV- 87

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  I+   ++RVV    D     +G  +  L   G+
Sbjct: 88  -----MCAGAIVHSRVKRVVYGASDLKTGAAGSFIDILQHPGM 125


>gi|225867781|ref|YP_002743729.1| deaminase [Streptococcus equi subsp. zooepidemicus]
 gi|225701057|emb|CAW97859.1| putative deaminase [Streptococcus equi subsp. zooepidemicus]
          Length = 164

 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
          FM  AL+ +     L      + C+IVK G +IGRG  A         HAE+ A+ EA  
Sbjct: 11 FMREALKEAE--KSLLKDEIPIGCVIVKAGHIIGRGHNAREERNQAIMHAEIMAINEANA 68

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 69 HEGNWRLLDTTLFVTIEPC 87


>gi|316971587|gb|EFV55344.1| tRNA-specific adenosine deaminase 2 [Trichinella spiralis]
          Length = 311

 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 23/100 (23%)

Query: 31  VACLIVKDGIVIGRG---VTAY-GGCPHAEVQALEEAGEEARG-----------ATAYVT 75
           V C+++ + ++IGRG   V  Y   C HAE++A +EA    +             T +VT
Sbjct: 26  VGCVLLYENVIIGRGHNRVNFYKNACRHAEMEAFDEAFLWCKANCFSFNDVFLKTTLFVT 85

Query: 76  LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            EPC        CA  I +  ++RVV     P+ R  G G
Sbjct: 86  CEPCMM------CAALICKMQLKRVVYGC--PNDRFGGFG 117


>gi|317123562|ref|YP_004097674.1| tRNA-adenosine deaminase [Intrasporangium calvum DSM 43043]
 gi|315587650|gb|ADU46947.1| tRNA-adenosine deaminase [Intrasporangium calvum DSM 43043]
          Length = 190

 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 40/88 (45%), Gaps = 15/88 (17%)

Query: 29  PSVACLIVKDGIVIGRG--VTAYGGCP--HAEVQALEEAGEEA-----RGATAYVTLEPC 79
           P  A +I  DG+VIGRG  V    G P  HAEV AL  A          GAT  VTLEPC
Sbjct: 40  PVGAVVIGSDGLVIGRGRNVREELGDPTGHAEVIALRSAAAAVGTWRLDGATLAVTLEPC 99

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDP 107
                   CA   I   + R+V    DP
Sbjct: 100 VM------CAGAAIAARVERIVFGAWDP 121


>gi|194044048|ref|XP_001925118.1| PREDICTED: deoxycytidylate deaminase-like [Sus scrofa]
          Length = 178

 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 7/60 (11%)

Query: 47  TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           T Y    HAE+ A + +   + +G T YV L PC+       CA+ II+ GI+ V+   D
Sbjct: 77  TKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNE------CAKLIIQAGIKEVIFMSD 130


>gi|170019158|ref|YP_001724112.1| tRNA-specific adenosine deaminase [Escherichia coli ATCC 8739]
 gi|169754086|gb|ACA76785.1| CMP/dCMP deaminase zinc-binding [Escherichia coli ATCC 8739]
          Length = 167

 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++V +  VIG G    +  +    HAE+ AL + G   +  R   AT YVTLEPC  
Sbjct: 30  VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 88

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  +I   I RVV    D     +G  +  L   G+
Sbjct: 89  -----MCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHSGM 126


>gi|254252116|ref|ZP_04945434.1| Cytidine/deoxycytidylate deaminase [Burkholderia dolosa AUO158]
 gi|124894725|gb|EAY68605.1| Cytidine/deoxycytidylate deaminase [Burkholderia dolosa AUO158]
          Length = 206

 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 50/121 (41%), Gaps = 17/121 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57
           PVS+ DA FM   L  +       +    V  ++V+   VI RG    +  +    HAE+
Sbjct: 39  PVSARDAHFMR--LAQAAAEEARAAGEVPVGAVLVRGDEVIARGFNHPIGGHDPSAHAEM 96

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL  A +  +     G   YVTLEPC        CA  I+   I RVV    DP     
Sbjct: 97  AALRMAAQRLQNYRMPGCELYVTLEPCLM------CAGAIMHARIARVVYGAPDPKTGAC 150

Query: 113 G 113
           G
Sbjct: 151 G 151


>gi|218461412|ref|ZP_03501503.1| putative nitrogen fixation symbiosis related protein [Rhizobium
           etli Kim 5]
          Length = 157

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 27/127 (21%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG---------VTAYGGCPHAEVQA 59
           RFM  AL  +R   G     P +  ++V D I + R          VTA     HAE+ A
Sbjct: 11  RFMEMALEEARA-AGERGEVP-IGAVVVIDDIAVSRSGNRTRELNDVTA-----HAEIAA 63

Query: 60  L----EEAGEEA-RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           +    E  G+E   GA  YVTLEPC+       CA  I    +RR+    +DP       
Sbjct: 64  IRLACEALGQERLAGADLYVTLEPCTM------CAAAISFARVRRLYYGAEDPKGGAVDN 117

Query: 115 GLQWLSQ 121
           G+++ +Q
Sbjct: 118 GVRFYAQ 124


>gi|193068331|ref|ZP_03049294.1| tRNA-specific adenosine deaminase [Escherichia coli E110019]
 gi|260845189|ref|YP_003222967.1| tRNA-specific adenosine deaminase [Escherichia coli O103:H2 str.
           12009]
 gi|192958283|gb|EDV88723.1| tRNA-specific adenosine deaminase [Escherichia coli E110019]
 gi|257760336|dbj|BAI31833.1| tRNA-specific adenosine deaminase [Escherichia coli O103:H2 str.
           12009]
          Length = 167

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++V +  VIG G    +  +    HAE+ AL + G   +  R   AT YVTLEPC  
Sbjct: 30  VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 88

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  +I   I RVV    D     +G  +  L   G+
Sbjct: 89  -----MCAGAMIHSRIGRVVFGAHDAKTGAAGSLMDVLHHPGM 126


>gi|170290377|ref|YP_001737193.1| carbon-monoxide dehydrogenase, catalytic subunit [Candidatus
           Korarchaeum cryptofilum OPF8]
 gi|170174457|gb|ACB07510.1| carbon-monoxide dehydrogenase, catalytic subunit [Candidatus
           Korarchaeum cryptofilum OPF8]
          Length = 640

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 61/153 (39%), Gaps = 9/153 (5%)

Query: 15  LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHA--EVQALEEAGEEARGATA 72
           +R    HV +T        LI  D +V+G G  A     H   + +A E AG   R    
Sbjct: 464 VRHDSSHVAITKE------LIANDILVVGTGCWAIAMSKHGFFKPEAAEMAGPGLREVCK 517

Query: 73  YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
            + + P  H G    C++ +I        + VD  D+  +G   +W S+K + +     +
Sbjct: 518 ALGIPPALHMGSCVDCSRMLIALAALADHLGVDISDLPAAGSAPEWYSEKAVSIGSYFVA 577

Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG 165
            G + +H     QV     +   +    ++++G
Sbjct: 578 SG-LLVHLGTIPQVLGSKRVVELLTKDAESLVG 609


>gi|320165206|gb|EFW42105.1| deoxycytidylate deaminase [Capsaspora owczarzaki ATCC 30864]
          Length = 192

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 11/73 (15%)

Query: 47  TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           T Y    HAE+ A L +   + +G T YV L PC+       CA+ II+ GI+ V+   D
Sbjct: 99  TKYMYVCHAELNAVLNKNASDVKGCTIYVALFPCNE------CAKIIIQSGIKEVIYKSD 152

Query: 106 D----PDVRVSGR 114
                P+  VS R
Sbjct: 153 KYHDRPEFVVSRR 165


>gi|225869728|ref|YP_002745675.1| deaminase [Streptococcus equi subsp. equi 4047]
 gi|225699132|emb|CAW92326.1| putative deaminase [Streptococcus equi subsp. equi 4047]
          Length = 164

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
          FM  AL+ +     L      + C+IVK G +IGRG  A         HAE+ A+ EA  
Sbjct: 11 FMREALKEAE--KSLLKDEIPIGCVIVKAGHIIGRGHNAREERNQAIMHAEIMAINEANA 68

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 69 HEGNWRLLDTTLFVTIEPC 87


>gi|237845333|ref|XP_002371964.1| hypothetical protein TGME49_000420 [Toxoplasma gondii ME49]
 gi|211969628|gb|EEB04824.1| hypothetical protein TGME49_000420 [Toxoplasma gondii ME49]
          Length = 180

 Score = 37.0 bits (84), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 40/81 (49%), Gaps = 10/81 (12%)

Query: 52  CPHAEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           C HAE  AL EAG + A   T YVT  PC        CA+ +++  IR VV   +  D  
Sbjct: 94  CIHAEANALLEAGRDRAMNGTLYVTCLPCLG------CAKLVVQSAIRTVVYAEEYDD-- 145

Query: 111 VSGRGLQWLSQKGIIVDRMME 131
            SG  L  L++ G+ V R  +
Sbjct: 146 KSG-ALDLLTRMGVSVRRFAD 165


>gi|161502277|ref|YP_001569389.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863624|gb|ABX20247.1| hypothetical protein SARI_00307 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 176

 Score = 37.0 bits (84), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++V +  VIG G    +  +    HAE+ AL + G   +  R    T YVTLEPC  
Sbjct: 41  VGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLLDTTLYVTLEPCV- 99

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  ++   IRRVV    D     +G  +  L   G+
Sbjct: 100 -----MCAGAMVHSRIRRVVFGARDAKTGAAGSLIDVLHHPGM 137


>gi|155372299|ref|NP_001094762.1| deoxycytidylate deaminase [Bos taurus]
 gi|151555965|gb|AAI49762.1| DCTD protein [Bos taurus]
 gi|296472434|gb|DAA14549.1| dCMP deaminase [Bos taurus]
          Length = 178

 Score = 37.0 bits (84), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 7/60 (11%)

Query: 47  TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           T Y    HAE+ A + +   + +G T YV L PC+       CA+ II+ GI+ V+   D
Sbjct: 77  TKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNE------CAKLIIQAGIKEVIFMSD 130


>gi|225013101|ref|ZP_03703515.1| CMP/dCMP deaminase zinc-binding [Flavobacteria bacterium MS024-2A]
 gi|225002759|gb|EEG40741.1| CMP/dCMP deaminase zinc-binding [Flavobacteria bacterium MS024-2A]
          Length = 154

 Score = 37.0 bits (84), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 44/101 (43%), Gaps = 20/101 (19%)

Query: 54  HAEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+QA+  A     G+   G T YVTLEPC        CA  ++     RVV    D  
Sbjct: 63  HAEMQAITAAANYLNGKYLVGCTLYVTLEPCV------MCAGALVWSQFDRVVFGASD-- 114

Query: 109 VRVSGRGLQW----LSQKGIIVDRMMESEGKIFLHAYLTRQ 145
              S RG Q     L  K I+   ++  E K  L A+  ++
Sbjct: 115 ---SKRGFQQANLDLHPKTILSGGVLAEEAKALLDAFFAKK 152


>gi|195977341|ref|YP_002122585.1| tRNA-specific adenosine-34 deaminase [Streptococcus equi subsp.
          zooepidemicus MGCS10565]
 gi|195974046|gb|ACG61572.1| tRNA-specific adenosine-34 deaminase [Streptococcus equi subsp.
          zooepidemicus MGCS10565]
          Length = 164

 Score = 37.0 bits (84), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
          FM  AL+ ++    L      + C+IVK G +IGRG  A         HAE+ A+ EA  
Sbjct: 11 FMREALKEAK--KSLLKDEIPIGCVIVKAGHIIGRGHNAREERNQAIMHAEIMAISEANV 68

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 69 HEGNWRLLDTTLFVTIEPC 87


>gi|308187798|ref|YP_003931929.1| tRNA-specific adenosine deaminase [Pantoea vagans C9-1]
 gi|308058308|gb|ADO10480.1| tRNA-specific adenosine deaminase [Pantoea vagans C9-1]
          Length = 163

 Score = 37.0 bits (84), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 54/129 (41%), Gaps = 21/129 (16%)

Query: 7   DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
           D  +M  AL  +R  W  G       V  ++V++  VIG G    +  +    HAE+ AL
Sbjct: 5   DEYWMRHALSLARRAWEQG----EVPVGAVLVQNDRVIGEGWNRPIGQHDPTAHAEIMAL 60

Query: 61  EEAG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            + G   E  R    T YVTLEPC        CA  ++   I R+V    D     +G  
Sbjct: 61  RQGGKVLENYRLLDTTLYVTLEPCV------MCAGAMVHSRISRLVYGAHDIKSGAAGSL 114

Query: 116 LQWLSQKGI 124
           L  L   G+
Sbjct: 115 LDVLGHPGM 123


>gi|299134221|ref|ZP_07027414.1| CMP/dCMP deaminase zinc-binding [Afipia sp. 1NLS2]
 gi|298590968|gb|EFI51170.1| CMP/dCMP deaminase zinc-binding [Afipia sp. 1NLS2]
          Length = 148

 Score = 37.0 bits (84), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 45/107 (42%), Gaps = 17/107 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEAG- 64
           FM  AL+  +  +  +     + C++V DG VI     R +       HAE+ AL EA  
Sbjct: 6   FMDLALK--QAEIAASGGEVPIGCVVVHDGAVIAQAGNRTLADRDPTAHAEMVALREAAR 63

Query: 65  ----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
               E       YVTLEPC+       CA  I    IRR+     DP
Sbjct: 64  KLGRERLTDCDLYVTLEPCTM------CAGAISHARIRRLYYGALDP 104


>gi|157376253|ref|YP_001474853.1| cytidine/deoxycytidylate deaminase family protein [Shewanella
           sediminis HAW-EB3]
 gi|157318627|gb|ABV37725.1| cytidine/deoxycytidylate deaminase family protein [Shewanella
           sediminis HAW-EB3]
          Length = 177

 Score = 37.0 bits (84), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++VKD  V+  G    +  +    HAE+Q L EAG   E  R    T YVTLEPC+ 
Sbjct: 29  VGAVLVKDDKVVAVGSNDCIGQHDPSAHAEMQCLREAGRLVENYRLLDTTLYVTLEPCAM 88

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 CA  ++   + R+V    D     +G
Sbjct: 89  ------CAGAMVHSRVSRLVFGAKDEKTGAAG 114


>gi|23097839|ref|NP_691305.1| hypothetical protein OB0384 [Oceanobacillus iheyensis HTE831]
 gi|22776063|dbj|BAC12340.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 159

 Score = 37.0 bits (84), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG---VTAYGG-CPHAEVQALEEAGE 65
          FMS A+  +     ++        +I+KD  +I  G   VT Y     HAEVQA+ +A E
Sbjct: 10 FMSKAIELAV--SNISQGGGPFGAVIIKDNKIIAEGTNQVTNYNDPTAHAEVQAIRQACE 67

Query: 66 -----EARGATAYVTLEPC 79
               E +G T Y + EPC
Sbjct: 68 KLSTFELKGCTLYTSCEPC 86


>gi|269797481|ref|YP_003311381.1| CMP/dCMP deaminase zinc-binding protein [Veillonella parvula DSM
           2008]
 gi|269094110|gb|ACZ24101.1| CMP/dCMP deaminase zinc-binding protein [Veillonella parvula DSM
           2008]
          Length = 169

 Score = 37.0 bits (84), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 47/115 (40%), Gaps = 17/115 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
           M   S D  FM  AL  +  H         +  ++V++  +I R        +    HAE
Sbjct: 1   MDERSRDEYFMGFALEEA--HKAYALGEIPIGAILVQNNTIISRHHNRRELDHDATAHAE 58

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           V  + EA +  +     G T YVT+EPC      P CA  II   I RVV    D
Sbjct: 59  VLVIREACDVLKRWRLTGCTLYVTIEPC------PMCAGAIINSRIDRVVYGASD 107


>gi|24378807|ref|NP_720762.1| putative deaminase [Streptococcus mutans UA159]
 gi|24376681|gb|AAN58068.1|AE014879_5 putative deaminase [Streptococcus mutans UA159]
          Length = 156

 Score = 37.0 bits (84), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGE 65
          FM  AL+ ++  + L      + C+IVKDG +IG G  A         HAE+ A+ +A  
Sbjct: 12 FMGEALKEAQ--LSLQKEEIPIGCVIVKDGQIIGCGHNAREEENLAIMHAEIMAINQANR 69

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 70 TQESWRLLDCTLFVTIEPC 88


>gi|270159636|ref|ZP_06188292.1| tRNA-specific adenosine deaminase [Legionella longbeachae D-4968]
 gi|289165578|ref|YP_003455716.1| tRNA-specific adenosine deaminase [Legionella longbeachae NSW150]
 gi|269987975|gb|EEZ94230.1| tRNA-specific adenosine deaminase [Legionella longbeachae D-4968]
 gi|288858751|emb|CBJ12656.1| tRNA-specific adenosine deaminase [Legionella longbeachae NSW150]
          Length = 149

 Score = 37.0 bits (84), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 15/87 (17%)

Query: 29  PSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPC 79
           P  A L+  +  ++G G      ++    HAE+QA+ +A +  +       T YVTLEPC
Sbjct: 24  PVGAILVSNENQLLGAGRNLIQKSHDPSSHAEIQAIRQASQRLQNHRLLDTTLYVTLEPC 83

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDD 106
           +       CA  ++   I R+V    D
Sbjct: 84  A------MCAGLMVHARISRLVFATRD 104


>gi|168187922|ref|ZP_02622557.1| tRNA-specific adenosine deaminase [Clostridium botulinum C str.
           Eklund]
 gi|169294234|gb|EDS76367.1| tRNA-specific adenosine deaminase [Clostridium botulinum C str.
           Eklund]
          Length = 147

 Score = 37.0 bits (84), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 17/108 (15%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64
           +FM  AL  ++  + +      V  +IV++G +I        T      HAE+ A+++A 
Sbjct: 4   KFMDIALDEAK--LAMEKDEVPVGAVIVRNGEIIASAHNLRETLNDPTAHAEMLAIKKAS 61

Query: 65  EEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
              +         YVTLEPC      P CA  II+  IR++ +   DP
Sbjct: 62  SVLKNWRLNECEMYVTLEPC------PMCAGAIIQSRIRKIYIGTIDP 103


>gi|159037136|ref|YP_001536389.1| hypothetical protein Sare_1500 [Salinispora arenicola CNS-205]
 gi|157915971|gb|ABV97398.1| bifunctional deaminase-reductase domain protein [Salinispora
           arenicola CNS-205]
          Length = 248

 Score = 37.0 bits (84), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 22/200 (11%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV-------- 200
           R H+ +    S D  + + G  S  ++G   K    LLR   D ++V  GT+        
Sbjct: 33  RPHLRVNFVTSVDGAVTVDGY-SAGLSGEPDKRVFGLLRMLCDGLVVAGGTMRHERYRPI 91

Query: 201 -LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
            L +      R +GL ++ P  +++     L         A + PV++          LA
Sbjct: 92  RLDERRRAWRREHGLPQY-PTLVVVSGSLNLDPAQAAFVDAPVRPVVLTHAAATAPPGLA 150

Query: 260 FRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
              +  +++ C  D  DL   L  L  RG+  LL EGG  +  +   + LVD + L  + 
Sbjct: 151 ---EVADVVECGDDRVDLTAGLAELRRRGLGQLLCEGGPHLFGALTAADLVDEVCLTLAP 207

Query: 318 IVIGEG------GIPSPLEE 331
           ++ G G      G PSP+  
Sbjct: 208 LLAGPGPGRITAGGPSPVRH 227


>gi|53802428|ref|YP_112823.1| zinc-binding domain-containing protein [Methylococcus capsulatus
           str. Bath]
 gi|53756189|gb|AAU90480.1| zinc-binding domain protein [Methylococcus capsulatus str. Bath]
          Length = 137

 Score = 37.0 bits (84), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 15/92 (16%)

Query: 25  TSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVT 75
           T+    +  ++VK+G ++G G    ++ +    HAE+ AL  AG           T YVT
Sbjct: 8   TAGEVPIGAVLVKNGEILGEGHNQPISTHDPTAHAEIVALRAAGARLGNYRLVDTTLYVT 67

Query: 76  LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           LEPC+       C   I+   + R+V    DP
Sbjct: 68  LEPCAM------CMGAILHARVGRLVFGAADP 93


>gi|27382607|ref|NP_774136.1| nitrogen fixation protein [Bradyrhizobium japonicum USDA 110]
 gi|27355779|dbj|BAC52761.1| nitrogen fixation protein [Bradyrhizobium japonicum USDA 110]
          Length = 152

 Score = 37.0 bits (84), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 17/121 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEAG- 64
           FM  AL+ +  + G     P + C++V++  VI     R +T Y    HAE+ AL EA  
Sbjct: 10  FMDLALKTAE-NAGKAGEVP-IGCVVVRNYEVIATAANRTLTDYDPTAHAEIVALREAAK 67

Query: 65  ----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
               E       YVTLEPC+       CA  I    +RR+     DP       G+++ +
Sbjct: 68  KIGSERLVDCDLYVTLEPCTM------CAGAISFARVRRLYYGAADPKGGAVESGVRFFA 121

Query: 121 Q 121
            
Sbjct: 122 S 122


>gi|332522875|ref|ZP_08399127.1| cytidine and deoxycytidylate deaminase zinc-binding region
          [Streptococcus porcinus str. Jelinkova 176]
 gi|332314139|gb|EGJ27124.1| cytidine and deoxycytidylate deaminase zinc-binding region
          [Streptococcus porcinus str. Jelinkova 176]
          Length = 176

 Score = 37.0 bits (84), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
          FM  AL+ +     L      + C+IVK+G +IGRG  A         HAE+ A+ EA  
Sbjct: 11 FMREALKEAE--KSLVKAEIPIGCVIVKEGKIIGRGHNAREELNQAIMHAEIMAINEANV 68

Query: 66 EARG-----ATAYVTLEPC 79
                    + +VT+EPC
Sbjct: 69 HEGNWRLLETSLFVTIEPC 87


>gi|257456686|ref|ZP_05621876.1| dCMP deaminase [Treponema vincentii ATCC 35580]
 gi|257445879|gb|EEV20932.1| dCMP deaminase [Treponema vincentii ATCC 35580]
          Length = 163

 Score = 37.0 bits (84), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 12/82 (14%)

Query: 54  HAEVQALEEAGEEA---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           HAE  A+ +A +      GAT Y  + PC        CA  II CGI+RV+    +    
Sbjct: 84  HAEQNAICQAAKRGISIDGATLYCKMTPCR------TCAMLIINCGIKRVIA---EKRYH 134

Query: 111 VSGRGLQWLSQKGIIVDRMMES 132
            S   +    Q G+I++ + ++
Sbjct: 135 DSADSIAMFKQAGVILEHLNDT 156


>gi|88604201|ref|YP_504379.1| CMP/dCMP deaminase, zinc-binding [Methanospirillum hungatei JF-1]
 gi|88189663|gb|ABD42660.1| CMP/dCMP deaminase, zinc-binding protein [Methanospirillum hungatei
           JF-1]
          Length = 274

 Score = 37.0 bits (84), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 14/103 (13%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALE 61
            D  FM AA++ +    G       +  ++V+DG++IGRG    V       HAE+  L+
Sbjct: 130 LDDPFMEAAIQEAE--KGKEEGGIPIGSVLVRDGVIIGRGHNRRVQNNDPMVHAEIDCLQ 187

Query: 62  EAGE--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
            AG     +    Y TL PC        CA  +++  I RV+V
Sbjct: 188 NAGRIGSYQDCILYSTLMPCFL------CAGAVVQFHIPRVIV 224


>gi|299542082|ref|ZP_07052398.1| hypothetical protein BFZC1_24048 [Lysinibacillus fusiformis ZC1]
 gi|298725397|gb|EFI66045.1| hypothetical protein BFZC1_24048 [Lysinibacillus fusiformis ZC1]
          Length = 171

 Score = 37.0 bits (84), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 17/110 (15%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           M +   D  FM  AL  ++    L    P +  ++V +G +I R      T      HAE
Sbjct: 1   MDIFDADRLFMKQALEEAQ-QAALLGEVP-IGAVLVYEGKIIARAHNLRETTQNATTHAE 58

Query: 57  VQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           +  ++EA ++         T YVTLEPC      P CA  I++  + RVV
Sbjct: 59  LLVIQEACKKIGSWRLEDTTLYVTLEPC------PMCAGAILQSRVPRVV 102


>gi|224476697|ref|YP_002634303.1| putative deaminase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421304|emb|CAL28118.1| putative deaminase similar to ComEB [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 153

 Score = 37.0 bits (84), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 48/122 (39%), Gaps = 31/122 (25%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVTAY---------GGCP----------HAEVQAL---EE 62
           T T  SV   IVKD  +I  G              GC           HAE+ AL    +
Sbjct: 22  TCTRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLMEDNHCIRTIHAEMNALLQCTK 81

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
            G    GAT YVT  PC        C + II+ GI+R+    D  +   +   +Q L Q 
Sbjct: 82  QGVSTEGATIYVTHFPC------LNCTKSIIQAGIKRIYYAQDYHNHEYA---IQLLKQS 132

Query: 123 GI 124
           GI
Sbjct: 133 GI 134


>gi|325295641|ref|YP_004282155.1| CMP/dCMP deaminase zinc-binding protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325066089|gb|ADY74096.1| CMP/dCMP deaminase zinc-binding protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 155

 Score = 37.0 bits (84), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 17/112 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
             D  F+  AL+ ++    L      +  +IVKD  +I R             HAE+ A+
Sbjct: 2   ELDHLFLLEALKEAKKAFKLGEV--PIGAIIVKDRKIISRAFNRKEFLQDPTAHAELLAI 59

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           +EA  +       G T Y T+EPC        C   II+  I R+V  V DP
Sbjct: 60  KEASRKLNSWRLNGCTLYSTVEPCIM------CCGVIIQSRIDRLVYSVPDP 105


>gi|224122016|ref|XP_002318729.1| predicted protein [Populus trichocarpa]
 gi|222859402|gb|EEE96949.1| predicted protein [Populus trichocarpa]
          Length = 225

 Score = 37.0 bits (84), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 40/130 (30%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYG-GCP------- 53
           S+D  FM+ AL  +       S +P+    ACL+ K+GI++G G   +  GC        
Sbjct: 68  SWDDYFMAIALLSAE-----RSKDPNRQVGACLVSKNGIILGIGYNGFPRGCSDDDLPWA 122

Query: 54  -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                            HAEV A L      A G   YVT+ PC+       CA+ II  
Sbjct: 123 KKSKSGDPLETKYPYVCHAEVNAILNTNHASAVGQRLYVTMFPCNE------CAKIIILS 176

Query: 96  GIRRVVVCVD 105
           G+  V+  ++
Sbjct: 177 GVSEVIYFIE 186


>gi|254442522|ref|ZP_05055998.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198256830|gb|EDY81138.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 177

 Score = 37.0 bits (84), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 24/126 (19%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNP---------SVACLIVKDGIVIG----RGVTA 48
           P   F+ R+ SA  R  R+++ L               +  +I   G V+G    R  + 
Sbjct: 9   PDCPFEKRYPSALQRNDRYYMELAYNQAIEAWRENEVPIGAVIEYKGEVVGSAHNRVEST 68

Query: 49  YGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                HAE+ A+ +A    +      AT YVT EPC      P C+   +   ++RVV  
Sbjct: 69  NDPTAHAEMLAITQASSAIKNWRLNEATLYVTKEPC------PMCSGASMMSRLKRVVYA 122

Query: 104 VDDPDV 109
           V DP +
Sbjct: 123 VPDPKM 128


>gi|150388180|ref|YP_001318229.1| CMP/dCMP deaminase, zinc-binding [Alkaliphilus metalliredigens
           QYMF]
 gi|149948042|gb|ABR46570.1| CMP/dCMP deaminase, zinc-binding [Alkaliphilus metalliredigens
           QYMF]
          Length = 146

 Score = 37.0 bits (84), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 9/58 (15%)

Query: 54  HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE  A+ +A   G E +G T YVTL+PC        CA+ +I  G++R+V     PD
Sbjct: 77  HAEQNAIIQAAYHGVEIQGTTLYVTLQPCV------LCAKMLINAGVKRLVFKGQYPD 128


>gi|221480648|gb|EEE19095.1| deoxycytidylate deaminase, putative [Toxoplasma gondii GT1]
 gi|221501404|gb|EEE27182.1| deoxycytidylate deaminase, putative [Toxoplasma gondii VEG]
          Length = 180

 Score = 37.0 bits (84), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 40/81 (49%), Gaps = 10/81 (12%)

Query: 52  CPHAEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           C HAE  AL EAG + A   T YVT  PC        CA+ +++  IR VV   +  D  
Sbjct: 94  CIHAEANALLEAGRDRAMNGTLYVTCLPCLG------CAKLVVQSAIRTVVYAEEYDD-- 145

Query: 111 VSGRGLQWLSQKGIIVDRMME 131
            SG  L  L++ G+ V R  +
Sbjct: 146 KSG-ALDLLNRMGVSVRRFAD 165


>gi|218706062|ref|YP_002413581.1| tRNA -specific adenosine deaminase [Escherichia coli UMN026]
 gi|293406001|ref|ZP_06649993.1| tRNA-specific adenosine deaminase [Escherichia coli FVEC1412]
 gi|298381801|ref|ZP_06991400.1| tRNA-specific adenosine deaminase [Escherichia coli FVEC1302]
 gi|300898326|ref|ZP_07116674.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 198-1]
 gi|218433159|emb|CAR14055.1| tRNA-specific adenosine deaminase [Escherichia coli UMN026]
 gi|284922509|emb|CBG35596.1| tRNA-specific adenosine deaminase [Escherichia coli 042]
 gi|291428209|gb|EFF01236.1| tRNA-specific adenosine deaminase [Escherichia coli FVEC1412]
 gi|298279243|gb|EFI20757.1| tRNA-specific adenosine deaminase [Escherichia coli FVEC1302]
 gi|300357988|gb|EFJ73858.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 198-1]
          Length = 178

 Score = 37.0 bits (84), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++V +  VIG G    +  +    HAE+ AL + G   +  R   AT YVTLEPC  
Sbjct: 41  VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 99

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  +I   I RVV    D     +G  +  L   G+
Sbjct: 100 -----MCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGM 137


>gi|154508436|ref|ZP_02044078.1| hypothetical protein ACTODO_00935 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798070|gb|EDN80490.1| hypothetical protein ACTODO_00935 [Actinomyces odontolyticus ATCC
           17982]
          Length = 435

 Score = 37.0 bits (84), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 42/91 (46%), Gaps = 15/91 (16%)

Query: 32  ACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSHY 82
           A ++ ++G +IGRG       +    HAE+ AL EAG         G T  VTLEPC+  
Sbjct: 21  AVVVDENGRIIGRGWNCREANHDPAGHAEIVALREAGRSRGTWRLTGCTLIVTLEPCTM- 79

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                CA  I+   I RVV    DP    +G
Sbjct: 80  -----CAGAILASRIDRVVFGAWDPKAGAAG 105


>gi|146321900|ref|YP_001201611.1| cytosine/adenosine deaminase [Streptococcus suis 98HAH33]
 gi|145692706|gb|ABP93211.1| Cytosine/adenosine deaminase [Streptococcus suis 98HAH33]
          Length = 141

 Score = 37.0 bits (84), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 9/55 (16%)

Query: 34 LIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
          +IVKDG +IGRG  A         HAEV A++EA           +T +VT+EPC
Sbjct: 1  MIVKDGQIIGRGHNAREELNQAIMHAEVMAIQEANNVEGNWRLLDSTLFVTIEPC 55


>gi|258593876|emb|CBE70217.1| Cytosine deaminase (Cytosine aminohydrolase) [NC10 bacterium 'Dutch
           sediment']
          Length = 154

 Score = 37.0 bits (84), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 14/100 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI--GRGVTAYGGCP--HAEVQALEEAG 64
           RF+ AA  F +           +  ++V++  VI  G       G P  H E+  L +AG
Sbjct: 10  RFIRAA--FEQARKSYNEGGLPIGAVMVENSTVIAVGHNRRVQDGDPTAHGEMDCLRQAG 67

Query: 65  EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
              R  G T Y TL PC        C+  +++ GI+RVV+
Sbjct: 68  RRPRYDGITLYTTLSPCMM------CSGTVLQFGIKRVVI 101


>gi|218929978|ref|YP_002347853.1| tRNA-specific adenosine deaminase [Yersinia pestis CO92]
 gi|115348589|emb|CAL21531.1| putative zinc-binding protein [Yersinia pestis CO92]
          Length = 159

 Score = 37.0 bits (84), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 11/76 (14%)

Query: 54  HAEVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+ AL + G+  +      AT YVTLEPC        CA  ++   IRR+V   +D  
Sbjct: 46  HAEIMALRQGGQAVQNYRLLDATLYVTLEPCVM------CAGAMVHSRIRRLVYGANDVK 99

Query: 109 VRVSGRGLQWLSQKGI 124
              +G  +  L   G+
Sbjct: 100 TGAAGSLVDILRHPGM 115


>gi|255067649|ref|ZP_05319504.1| tRNA-specific adenosine deaminase [Neisseria sicca ATCC 29256]
 gi|255048123|gb|EET43587.1| tRNA-specific adenosine deaminase [Neisseria sicca ATCC 29256]
          Length = 243

 Score = 37.0 bits (84), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 66/156 (42%), Gaps = 22/156 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
            P SS    FM AAL  +     +      V  ++V +  +I       V+ +    HAE
Sbjct: 89  FPTSSEMETFMRAALTQAEQSASIGEI--PVGAVVVSNNQIIAAAHNTCVSDHDISRHAE 146

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           ++AL  AG   +     G   Y+TLEPC+       CA  II+  +RRV+    +P    
Sbjct: 147 IRALAAAGAALQNYRLDGCDLYITLEPCAM------CASAIIQARVRRVIYGAAEPKTGA 200

Query: 112 SGRGLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
           +G  +       L++   I   ++E E K  L A+ 
Sbjct: 201 AGSVVNLFANPLLNKHTAIKGGILEDECKAVLQAFF 236


>gi|170767485|ref|ZP_02901938.1| tRNA-specific adenosine deaminase [Escherichia albertii TW07627]
 gi|170123819|gb|EDS92750.1| tRNA-specific adenosine deaminase [Escherichia albertii TW07627]
          Length = 178

 Score = 37.0 bits (84), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++V +  VIG G    +  +    HAE+ AL + G   +  R   AT YVTLEPC  
Sbjct: 41  VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 99

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  +I   I RVV    D     +G  +  L   G+
Sbjct: 100 -----MCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGM 137


>gi|24113886|ref|NP_708396.1| tRNA-specific adenosine deaminase [Shigella flexneri 2a str. 301]
 gi|30063946|ref|NP_838117.1| tRNA-specific adenosine deaminase [Shigella flexneri 2a str. 2457T]
 gi|82545011|ref|YP_408958.1| tRNA-specific adenosine deaminase [Shigella boydii Sb227]
 gi|89109365|ref|AP_003145.1| tRNA-specific adenosine deaminase [Escherichia coli str. K-12
           substr. W3110]
 gi|157162036|ref|YP_001459354.1| tRNA-specific adenosine deaminase [Escherichia coli HS]
 gi|187730453|ref|YP_001881338.1| tRNA-specific adenosine deaminase [Shigella boydii CDC 3083-94]
 gi|188496019|ref|ZP_03003289.1| tRNA-specific adenosine deaminase [Escherichia coli 53638]
 gi|209920038|ref|YP_002294122.1| tRNA-specific adenosine deaminase [Escherichia coli SE11]
 gi|218547914|ref|YP_002381705.1| tRNA-specific adenosine deaminase [Escherichia fergusonii ATCC
           35469]
 gi|218555084|ref|YP_002387997.1| tRNA-specific adenosine deaminase [Escherichia coli IAI1]
 gi|218696186|ref|YP_002403853.1| tRNA-specific adenosine deaminase [Escherichia coli 55989]
 gi|254162534|ref|YP_003045642.1| tRNA-specific adenosine deaminase [Escherichia coli B str. REL606]
 gi|256017292|ref|ZP_05431157.1| tRNA-specific adenosine deaminase [Shigella sp. D9]
 gi|293410974|ref|ZP_06654550.1| tRNA-specific adenosine deaminase [Escherichia coli B354]
 gi|300817664|ref|ZP_07097879.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 107-1]
 gi|300820763|ref|ZP_07100913.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 119-7]
 gi|300904258|ref|ZP_07122117.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 84-1]
 gi|300920727|ref|ZP_07137133.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 115-1]
 gi|300927064|ref|ZP_07142816.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 182-1]
 gi|300927685|ref|ZP_07143253.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 187-1]
 gi|300951723|ref|ZP_07165542.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 116-1]
 gi|300958800|ref|ZP_07170912.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 175-1]
 gi|301022068|ref|ZP_07185995.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 196-1]
 gi|301024846|ref|ZP_07188483.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 69-1]
 gi|301302925|ref|ZP_07209053.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 124-1]
 gi|301330339|ref|ZP_07222986.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 78-1]
 gi|301648323|ref|ZP_07248063.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 146-1]
 gi|312973195|ref|ZP_07787367.1| tRNA-specific adenosine deaminase [Escherichia coli 1827-70]
 gi|331643182|ref|ZP_08344317.1| tRNA-specific adenosine deaminase [Escherichia coli H736]
 gi|331664126|ref|ZP_08365036.1| tRNA-specific adenosine deaminase [Escherichia coli TA143]
 gi|331669308|ref|ZP_08370156.1| tRNA-specific adenosine deaminase [Escherichia coli TA271]
 gi|331678554|ref|ZP_08379229.1| tRNA-specific adenosine deaminase [Escherichia coli H591]
 gi|331684208|ref|ZP_08384804.1| tRNA-specific adenosine deaminase [Escherichia coli H299]
 gi|332278286|ref|ZP_08390699.1| tRNA-specific adenosine deaminase [Shigella sp. D9]
 gi|296183|emb|CAA51064.1| unnamed protein product [Escherichia coli]
 gi|987637|dbj|BAA10909.1| YFHC-ECOLI protein [Escherichia coli K-12]
 gi|1033148|gb|AAA79821.1| alternate name yfhC; orf178 of GenBank Accession Number X72336
           [Escherichia coli str. K-12 substr. MG1655]
 gi|24052985|gb|AAN44103.1| putative deaminase [Shigella flexneri 2a str. 301]
 gi|30042202|gb|AAP17927.1| putative deaminase [Shigella flexneri 2a str. 2457T]
 gi|81246422|gb|ABB67130.1| putative deaminase [Shigella boydii Sb227]
 gi|85675450|dbj|BAE76735.1| tRNA-specific adenosine deaminase [Escherichia coli str. K12
           substr. W3110]
 gi|157067716|gb|ABV06971.1| tRNA-specific adenosine deaminase [Escherichia coli HS]
 gi|187427445|gb|ACD06719.1| tRNA-specific adenosine deaminase [Shigella boydii CDC 3083-94]
 gi|188491218|gb|EDU66321.1| tRNA-specific adenosine deaminase [Escherichia coli 53638]
 gi|209913297|dbj|BAG78371.1| putative deaminase [Escherichia coli SE11]
 gi|218352918|emb|CAU98717.1| tRNA-specific adenosine deaminase [Escherichia coli 55989]
 gi|218355455|emb|CAQ88064.1| tRNA-specific adenosine deaminase [Escherichia fergusonii ATCC
           35469]
 gi|218361852|emb|CAQ99452.1| tRNA-specific adenosine deaminase [Escherichia coli IAI1]
 gi|253974435|gb|ACT40106.1| tRNA-specific adenosine deaminase [Escherichia coli B str. REL606]
 gi|253978602|gb|ACT44272.1| tRNA-specific adenosine deaminase [Escherichia coli BL21(DE3)]
 gi|281601959|gb|ADA74943.1| tRNA-specific adenosine deaminase [Shigella flexneri 2002017]
 gi|291471442|gb|EFF13926.1| tRNA-specific adenosine deaminase [Escherichia coli B354]
 gi|299881373|gb|EFI89584.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 196-1]
 gi|300314548|gb|EFJ64332.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 175-1]
 gi|300396377|gb|EFJ79915.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 69-1]
 gi|300403791|gb|EFJ87329.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 84-1]
 gi|300412298|gb|EFJ95608.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 115-1]
 gi|300416948|gb|EFK00259.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 182-1]
 gi|300449007|gb|EFK12627.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 116-1]
 gi|300464238|gb|EFK27731.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 187-1]
 gi|300526516|gb|EFK47585.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 119-7]
 gi|300529652|gb|EFK50714.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 107-1]
 gi|300841860|gb|EFK69620.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 124-1]
 gi|300843673|gb|EFK71433.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 78-1]
 gi|301073599|gb|EFK88405.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 146-1]
 gi|309702891|emb|CBJ02222.1| tRNA-specific adenosine deaminase [Escherichia coli ETEC H10407]
 gi|310331790|gb|EFP99025.1| tRNA-specific adenosine deaminase [Escherichia coli 1827-70]
 gi|315137183|dbj|BAJ44342.1| tRNA-specific adenosine deaminase [Escherichia coli DH1]
 gi|315256586|gb|EFU36554.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 85-1]
 gi|315615821|gb|EFU96453.1| tRNA-specific adenosine deaminase [Escherichia coli 3431]
 gi|320196395|gb|EFW71019.1| tRNA-specific adenosine-34 deaminase [Escherichia coli WV_060327]
 gi|323156217|gb|EFZ42376.1| tRNA-specific adenosine deaminase [Escherichia coli EPECa14]
 gi|323170158|gb|EFZ55811.1| tRNA-specific adenosine deaminase [Escherichia coli LT-68]
 gi|323177311|gb|EFZ62899.1| tRNA-specific adenosine deaminase [Escherichia coli 1180]
 gi|323184561|gb|EFZ69935.1| tRNA-specific adenosine deaminase [Escherichia coli 1357]
 gi|324020017|gb|EGB89236.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 117-3]
 gi|325496361|gb|EGC94220.1| tRNA-specific adenosine deaminase [Escherichia fergusonii ECD227]
 gi|331039980|gb|EGI12200.1| tRNA-specific adenosine deaminase [Escherichia coli H736]
 gi|331059925|gb|EGI31902.1| tRNA-specific adenosine deaminase [Escherichia coli TA143]
 gi|331064502|gb|EGI36413.1| tRNA-specific adenosine deaminase [Escherichia coli TA271]
 gi|331075014|gb|EGI46334.1| tRNA-specific adenosine deaminase [Escherichia coli H591]
 gi|331079160|gb|EGI50362.1| tRNA-specific adenosine deaminase [Escherichia coli H299]
 gi|332100638|gb|EGJ03984.1| tRNA-specific adenosine deaminase [Shigella sp. D9]
 gi|333000545|gb|EGK20124.1| tRNA-specific adenosine deaminase [Shigella flexneri VA-6]
          Length = 178

 Score = 37.0 bits (84), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++V +  VIG G    +  +    HAE+ AL + G   +  R   AT YVTLEPC  
Sbjct: 41  VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 99

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  +I   I RVV    D     +G  +  L   G+
Sbjct: 100 -----MCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGM 137


>gi|290581189|ref|YP_003485581.1| putative deaminase [Streptococcus mutans NN2025]
 gi|254998088|dbj|BAH88689.1| putative deaminase [Streptococcus mutans NN2025]
          Length = 156

 Score = 37.0 bits (84), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 11/79 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGE 65
          FM  AL+ ++  + L      + C+IVKDG +IG G  A         HAE+ A+ +A  
Sbjct: 12 FMGEALKEAQ--LSLQKEEIPIGCVIVKDGQIIGCGHNAREEENLAIMHAEIMAINQANR 69

Query: 66 EARG-----ATAYVTLEPC 79
                    T +VT+EPC
Sbjct: 70 TQESWRLLDCTLFVTIEPC 88


>gi|15803084|ref|NP_289115.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 EDL933]
 gi|15832679|ref|NP_311452.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           Sakai]
 gi|82777934|ref|YP_404283.1| tRNA-specific adenosine deaminase [Shigella dysenteriae Sd197]
 gi|91211884|ref|YP_541870.1| tRNA-specific adenosine deaminase [Escherichia coli UTI89]
 gi|110642721|ref|YP_670451.1| tRNA-specific adenosine deaminase [Escherichia coli 536]
 gi|117624781|ref|YP_853694.1| tRNA-specific adenosine deaminase [Escherichia coli APEC O1]
 gi|187775816|ref|ZP_02798525.2| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4196]
 gi|189009982|ref|ZP_02803540.2| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4076]
 gi|189405037|ref|ZP_02812923.2| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC869]
 gi|189405736|ref|ZP_02823945.2| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC508]
 gi|191172647|ref|ZP_03034186.1| tRNA-specific adenosine deaminase [Escherichia coli F11]
 gi|194432153|ref|ZP_03064442.1| tRNA-specific adenosine deaminase [Shigella dysenteriae 1012]
 gi|218559479|ref|YP_002392392.1| tRNA-specific adenosine deaminase [Escherichia coli S88]
 gi|218690674|ref|YP_002398886.1| tRNA-specific adenosine deaminase [Escherichia coli ED1a]
 gi|237705067|ref|ZP_04535548.1| tRNA-specific adenosine deaminase [Escherichia sp. 3_2_53FAA]
 gi|291283784|ref|YP_003500602.1| tRNA-specific adenosine deaminase [Escherichia coli O55:H7 str.
           CB9615]
 gi|293415828|ref|ZP_06658471.1| tRNA-specific adenosine deaminase [Escherichia coli B185]
 gi|300935691|ref|ZP_07150661.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 21-1]
 gi|300974171|ref|ZP_07172489.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 200-1]
 gi|309784689|ref|ZP_07679322.1| tRNA-specific adenosine deaminase [Shigella dysenteriae 1617]
 gi|331648252|ref|ZP_08349342.1| tRNA-specific adenosine deaminase [Escherichia coli M605]
 gi|331653994|ref|ZP_08354995.1| tRNA-specific adenosine deaminase [Escherichia coli M718]
 gi|331658703|ref|ZP_08359647.1| tRNA-specific adenosine deaminase [Escherichia coli TA206]
 gi|12516972|gb|AAG57673.1|AE005486_4 putative deaminase [Escherichia coli O157:H7 str. EDL933]
 gi|13362896|dbj|BAB36848.1| putative deaminase [Escherichia coli O157:H7 str. Sakai]
 gi|81242082|gb|ABB62792.1| putative deaminase [Shigella dysenteriae Sd197]
 gi|91073458|gb|ABE08339.1| putative deaminase [Escherichia coli UTI89]
 gi|110344313|gb|ABG70550.1| hypothetical protein YfhC [Escherichia coli 536]
 gi|115513905|gb|ABJ01980.1| tRNA-specific adenosine deaminase [Escherichia coli APEC O1]
 gi|187770595|gb|EDU34439.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4196]
 gi|189003519|gb|EDU72505.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4076]
 gi|189372298|gb|EDU90714.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC869]
 gi|189378592|gb|EDU97008.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC508]
 gi|190907120|gb|EDV66720.1| tRNA-specific adenosine deaminase [Escherichia coli F11]
 gi|194419682|gb|EDX35762.1| tRNA-specific adenosine deaminase [Shigella dysenteriae 1012]
 gi|209762958|gb|ACI79791.1| putative deaminase [Escherichia coli]
 gi|209762960|gb|ACI79792.1| putative deaminase [Escherichia coli]
 gi|209762962|gb|ACI79793.1| putative deaminase [Escherichia coli]
 gi|209762964|gb|ACI79794.1| putative deaminase [Escherichia coli]
 gi|209762966|gb|ACI79795.1| putative deaminase [Escherichia coli]
 gi|218366248|emb|CAR03995.1| tRNA-specific adenosine deaminase [Escherichia coli S88]
 gi|218428238|emb|CAR09014.1| tRNA-specific adenosine deaminase [Escherichia coli ED1a]
 gi|222034264|emb|CAP77005.1| tRNA-specific adenosine deaminase [Escherichia coli LF82]
 gi|226901433|gb|EEH87692.1| tRNA-specific adenosine deaminase [Escherichia sp. 3_2_53FAA]
 gi|290763657|gb|ADD57618.1| tRNA-specific adenosine deaminase [Escherichia coli O55:H7 str.
           CB9615]
 gi|291433476|gb|EFF06455.1| tRNA-specific adenosine deaminase [Escherichia coli B185]
 gi|294489520|gb|ADE88276.1| tRNA-specific adenosine deaminase [Escherichia coli IHE3034]
 gi|300308910|gb|EFJ63430.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 200-1]
 gi|300459125|gb|EFK22618.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 21-1]
 gi|307625893|gb|ADN70197.1| tRNA-specific adenosine deaminase [Escherichia coli UM146]
 gi|308927059|gb|EFP72533.1| tRNA-specific adenosine deaminase [Shigella dysenteriae 1617]
 gi|315288035|gb|EFU47437.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 110-3]
 gi|315300515|gb|EFU59744.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 16-3]
 gi|323188326|gb|EFZ73618.1| tRNA-specific adenosine deaminase [Escherichia coli RN587/1]
 gi|323949213|gb|EGB45104.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Escherichia coli H252]
 gi|324013577|gb|EGB82796.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 60-1]
 gi|326345048|gb|EGD68792.1| tRNA-specific adenosine-34 deaminase [Escherichia coli O157:H7 str.
           1044]
 gi|327252269|gb|EGE63941.1| tRNA-specific adenosine deaminase [Escherichia coli STEC_7v]
 gi|330912330|gb|EGH40840.1| tRNA-specific adenosine-34 deaminase [Escherichia coli AA86]
 gi|331043112|gb|EGI15252.1| tRNA-specific adenosine deaminase [Escherichia coli M605]
 gi|331048843|gb|EGI20919.1| tRNA-specific adenosine deaminase [Escherichia coli M718]
 gi|331054368|gb|EGI26395.1| tRNA-specific adenosine deaminase [Escherichia coli TA206]
          Length = 178

 Score = 37.0 bits (84), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++V +  VIG G    +  +    HAE+ AL + G   +  R   AT YVTLEPC  
Sbjct: 41  VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 99

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  +I   I RVV    D     +G  +  L   G+
Sbjct: 100 -----MCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGM 137


>gi|332670626|ref|YP_004453634.1| bifunctional deaminase-reductase domain-containing protein
           [Cellulomonas fimi ATCC 484]
 gi|332339664|gb|AEE46247.1| bifunctional deaminase-reductase domain protein [Cellulomonas fimi
           ATCC 484]
          Length = 274

 Score = 37.0 bits (84), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 20/186 (10%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH----LLRAQSDAILVGIGTVLADDPE 206
           H+   +  S D     A  G+   +G I+    H    +LRA +D +LVG GTV A+   
Sbjct: 52  HVRANMVSSLDG----AATGADRRSGSINDPADHRVFRVLRALADVVLVGGGTVRAEHYS 107

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSL--DSKIIKTALL---APVIIVTENDDPVLALAFR 261
                 GL+E     +   P  +L++      +  ALL    P I++T +  P L     
Sbjct: 108 ALEVPAGLEEAR-RALGRSPEIELAVVTAGADLPGALLDGPRPPIVITTSQSPGLDQVRD 166

Query: 262 K---KNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
           +   + + +   D     DL+  L  L  RG++ +L EGG ++    + + LVD +    
Sbjct: 167 RVGPERVIVTESDTPGVVDLRVALAALGARGLSHVLAEGGPSLLGQLLEADLVDELCATS 226

Query: 316 SQIVIG 321
           S +++G
Sbjct: 227 SPVLVG 232


>gi|315647606|ref|ZP_07900708.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus vortex
          V453]
 gi|315277045|gb|EFU40386.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus vortex
          V453]
          Length = 159

 Score = 37.0 bits (84), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 9/55 (16%)

Query: 34 LIVKDGIVIGRG---VTAYGG-CPHAEVQALEEA-----GEEARGATAYVTLEPC 79
          ++VK+G VIGRG   VTA      HAEVQA+ EA       + +G T Y + EPC
Sbjct: 32 IVVKEGKVIGRGRNLVTALNDPTAHAEVQAIREACLHMEDFQLKGCTIYTSCEPC 86


>gi|218701072|ref|YP_002408701.1| tRNA-specific adenosine deaminase [Escherichia coli IAI39]
 gi|218371058|emb|CAR18885.1| tRNA-specific adenosine deaminase [Escherichia coli IAI39]
          Length = 178

 Score = 37.0 bits (84), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++V +  VIG G    +  +    HAE+ AL + G   +  R   AT YVTLEPC  
Sbjct: 41  VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 99

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  +I   I RVV    D     +G  +  L   G+
Sbjct: 100 -----MCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGM 137


>gi|26248923|ref|NP_754963.1| tRNA-specific adenosine deaminase [Escherichia coli CFT073]
 gi|227887593|ref|ZP_04005398.1| tRNA-specific adenosine deaminase [Escherichia coli 83972]
 gi|300982262|ref|ZP_07175973.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 45-1]
 gi|301047197|ref|ZP_07194289.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 185-1]
 gi|312965474|ref|ZP_07779706.1| tRNA-specific adenosine deaminase [Escherichia coli 2362-75]
 gi|26109329|gb|AAN81531.1|AE016764_213 Hypothetical protein yfhC [Escherichia coli CFT073]
 gi|227835943|gb|EEJ46409.1| tRNA-specific adenosine deaminase [Escherichia coli 83972]
 gi|300300874|gb|EFJ57259.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 185-1]
 gi|300408816|gb|EFJ92354.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 45-1]
 gi|307554578|gb|ADN47353.1| tRNA-specific adenosine deaminase [Escherichia coli ABU 83972]
 gi|312289894|gb|EFR17782.1| tRNA-specific adenosine deaminase [Escherichia coli 2362-75]
 gi|315292466|gb|EFU51818.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 153-1]
 gi|324008467|gb|EGB77686.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 57-2]
          Length = 178

 Score = 37.0 bits (84), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++V +  VIG G    +  +    HAE+ AL + G   +  R   AT YVTLEPC  
Sbjct: 41  VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 99

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  +I   I RVV    D     +G  +  L   G+
Sbjct: 100 -----MCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGM 137


>gi|74313082|ref|YP_311501.1| tRNA-specific adenosine deaminase [Shigella sonnei Ss046]
 gi|73856559|gb|AAZ89266.1| putative deaminase [Shigella sonnei Ss046]
 gi|323169455|gb|EFZ55128.1| tRNA-specific adenosine deaminase [Shigella sonnei 53G]
          Length = 178

 Score = 36.6 bits (83), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++V +  VIG G    +  +    HAE+ AL + G   +  R   AT YVTLEPC  
Sbjct: 41  VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 99

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  +I   I RVV    D     +G  +  L   G+
Sbjct: 100 -----MCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGM 137


>gi|329851126|ref|ZP_08265883.1| cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Asticcacaulis biprosthecum C19]
 gi|328839972|gb|EGF89544.1| cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Asticcacaulis biprosthecum C19]
          Length = 154

 Score = 36.6 bits (83), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 11/75 (14%)

Query: 52  CPHAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           C HAE+ AL  AG+        G   YVTLEPC+       CA  I    I RV+    D
Sbjct: 54  CAHAEILALRAAGQAIGNYRLGGLWLYVTLEPCAM------CAGAISHARIARVIYGAPD 107

Query: 107 PDVRVSGRGLQWLSQ 121
           P       G ++ +Q
Sbjct: 108 PKGGAVAHGPKFFAQ 122


>gi|291336300|gb|ADD95862.1| hypothetical protein [uncultured organism MedDCM-OCT-S12-C54]
          Length = 212

 Score = 36.6 bits (83), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 50/117 (42%), Gaps = 27/117 (23%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV--------KD-GIVIGRGVTAYGGC 52
           P SS D  +M  A   S+     ++    V C IV        KD G VI  GV +    
Sbjct: 30  PASSADENYMDLAFLLSQ----SSTATGRVGCAIVSGVRDGAAKDQGSVIVCGVNSGLYS 85

Query: 53  P-----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           P     HAE  A+ E+   G   RGAT YV+  PC+H      C   +   GI R+V
Sbjct: 86  PLKADCHAEANAIAESAASGWPLRGATCYVSKPPCNH------CFSLLAVSGIARIV 136


>gi|254281607|ref|ZP_04956575.1| tRNA-specific adenosine deaminase [gamma proteobacterium NOR51-B]
 gi|219677810|gb|EED34159.1| tRNA-specific adenosine deaminase [gamma proteobacterium NOR51-B]
          Length = 164

 Score = 36.6 bits (83), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 48/113 (42%), Gaps = 17/113 (15%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGR-GVTAYGGC---PHAEVQA 59
           S FD   MS AL   +  +        V  ++V DG V+   G    G C    HAE+ A
Sbjct: 5   SDFDREMMSLALE--KAAMAAAQGEVPVGAVVVMDGKVVATAGNGQIGDCDPTAHAEILA 62

Query: 60  LEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           L +A    R     GAT Y TLEPC+       C   ++   I R+V    +P
Sbjct: 63  LRDAARAIRNYRLAGATLYATLEPCTM------CCGALVHARIGRLVYGALEP 109


>gi|311897119|dbj|BAJ29527.1| putative deaminase [Kitasatospora setae KM-6054]
          Length = 179

 Score = 36.6 bits (83), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 44/98 (44%), Gaps = 15/98 (15%)

Query: 25  TSTNPSVACLIVKDGIVIGRG--VTAYGGCP--HAEVQALEEAGEEA-----RGATAYVT 75
           T   P  A ++  DG V+GRG  V    G P  HAEV A+  A  E       G T  VT
Sbjct: 50  TGDVPVGAFVLGPDGTVLGRGHNVREAVGDPTGHAEVVAIRAAAAEVGEWRLSGCTLVVT 109

Query: 76  LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           LEPC+       CA  I+   + RVV    DP    +G
Sbjct: 110 LEPCTM------CAGAIVLSRLARVVFGAYDPKAGAAG 141


>gi|163792400|ref|ZP_02186377.1| putative nucleotide deaminase [alpha proteobacterium BAL199]
 gi|159182105|gb|EDP66614.1| putative nucleotide deaminase [alpha proteobacterium BAL199]
          Length = 156

 Score = 36.6 bits (83), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 16/125 (12%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D + +  A+  S+ +    +  P    ++V+DG+++G G    +T +    HAEV A+  
Sbjct: 3   DEKHLRRAIELSQGNAEAATGGP-FGAVVVRDGMIVGEGANRVITDFDPTAHAEVVAIRA 61

Query: 63  AGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A  +       GA  Y + EPC      P C   I+   I R+V      D    G    
Sbjct: 62  ACRQLGTYDLSGAVIYTSCEPC------PMCLAAILWARIDRMVYANTRADAAAIGFDDA 115

Query: 118 WLSQK 122
           W  ++
Sbjct: 116 WFYEQ 120


>gi|42565719|ref|NP_190423.2| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
           thaliana]
 gi|91806546|gb|ABE66000.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
           thaliana]
 gi|332644907|gb|AEE78428.1| dCMP deaminase [Arabidopsis thaliana]
          Length = 232

 Score = 36.6 bits (83), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 32/100 (32%)

Query: 32  ACLIVKDGIVIGRGVTAYG-GCP------------------------HAEVQA-LEEAGE 65
           ACL+ ++G+++G G   +  GC                         HAEV A L     
Sbjct: 92  ACLVSQNGVILGIGYNGFPRGCSDDKLPWAKKSRTGDPLETKYPYVCHAEVNAILNTNHA 151

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
            A G   YVT+ PC+       CA+ I++ G+  V+  V+
Sbjct: 152 SAAGQKLYVTMFPCNE------CAKIILQSGVAEVIYFVE 185


>gi|281179608|dbj|BAI55938.1| putative deaminase [Escherichia coli SE15]
          Length = 178

 Score = 36.6 bits (83), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++V +  VIG G    +  +    HAE+ AL + G   +  R   AT YVTLEPC  
Sbjct: 41  VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 99

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  +I   I RVV    D     +G  +  L   G+
Sbjct: 100 -----MCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGM 137


>gi|210631978|ref|ZP_03297143.1| hypothetical protein COLSTE_01034 [Collinsella stercoris DSM 13279]
 gi|210159780|gb|EEA90751.1| hypothetical protein COLSTE_01034 [Collinsella stercoris DSM 13279]
          Length = 647

 Score = 36.6 bits (83), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 45/112 (40%), Gaps = 17/112 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
           + D RFMS AL  +R    +      +  ++V +G VI R             HAE  A+
Sbjct: 6   AVDERFMSMALEEARAAASIGEV--PIGAVVVHEGRVIARAHNRREADEDPSAHAEFAAM 63

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
            EA          G T YVTLEPC        CA  ++   I R V    DP
Sbjct: 64  MEASRALGRWRLTGCTVYVTLEPCLM------CAGLMVNARIDRCVFGAYDP 109


>gi|170023497|ref|YP_001720002.1| tRNA-specific adenosine deaminase [Yersinia pseudotuberculosis
           YPIII]
 gi|169750031|gb|ACA67549.1| CMP/dCMP deaminase zinc-binding [Yersinia pseudotuberculosis YPIII]
          Length = 187

 Score = 36.6 bits (83), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V    VIG G    +       HAE+ AL + G+  +      AT YVTLEPC  
Sbjct: 47  VGAVLVLGNKVIGEGWNRPIRDNDPTAHAEIMALRQGGQAVQNYRLLDATLYVTLEPCVM 106

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  ++   IRR+V   +D     +G  +  L   G+
Sbjct: 107 ------CAGAMVHSRIRRLVYGANDVKTGAAGSLVDILRHPGM 143


>gi|149408294|ref|YP_001294573.1| hypothetical protein ORF065 [Pseudomonas phage M6]
          Length = 153

 Score = 36.6 bits (83), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 10/78 (12%)

Query: 54  HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           HAE+ AL   G  A G T Y +  PC      P C +   + G++RV      P +  +G
Sbjct: 72  HAEINALNFLGSPATGFTLYTSF-PC-----CPNCMEAAGKAGVKRVAF----PGIDYAG 121

Query: 114 RGLQWLSQKGIIVDRMME 131
           R   W+++    +D  +E
Sbjct: 122 RDPGWVAEWNQRIDETLE 139


>gi|45442315|ref|NP_993854.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108808356|ref|YP_652272.1| tRNA-specific adenosine deaminase [Yersinia pestis Antiqua]
 gi|108811379|ref|YP_647146.1| tRNA-specific adenosine deaminase [Yersinia pestis Nepal516]
 gi|145599538|ref|YP_001163614.1| tRNA-specific adenosine deaminase [Yersinia pestis Pestoides F]
 gi|149365378|ref|ZP_01887413.1| tRNA-specific adenosine deaminase [Yersinia pestis CA88-4125]
 gi|229838506|ref|ZP_04458665.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229895510|ref|ZP_04510681.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis Pestoides A]
 gi|229899076|ref|ZP_04514220.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229901629|ref|ZP_04516751.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis Nepal516]
 gi|45437179|gb|AAS62731.1| putative zinc-binding protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108775027|gb|ABG17546.1| tRNA-adenosine deaminase [Yersinia pestis Nepal516]
 gi|108780269|gb|ABG14327.1| tRNA-adenosine deaminase [Yersinia pestis Antiqua]
 gi|145211234|gb|ABP40641.1| tRNA-adenosine deaminase [Yersinia pestis Pestoides F]
 gi|149291791|gb|EDM41865.1| tRNA-specific adenosine deaminase [Yersinia pestis CA88-4125]
 gi|229681558|gb|EEO77652.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis Nepal516]
 gi|229688021|gb|EEO80093.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229694872|gb|EEO84919.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701316|gb|EEO89344.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis Pestoides A]
 gi|320016065|gb|ADV99636.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 187

 Score = 36.6 bits (83), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V    VIG G    +       HAE+ AL + G+  +      AT YVTLEPC  
Sbjct: 47  VGAVLVLGNKVIGEGWNRPIRDNDPTAHAEIMALRQGGQAVQNYRLLDATLYVTLEPCVM 106

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  ++   IRR+V   +D     +G  +  L   G+
Sbjct: 107 ------CAGAMVHSRIRRLVYGANDVKTGAAGSLVDILRHPGM 143


>gi|321313686|ref|YP_004205973.1| tRNA specific adenosine deaminase [Bacillus subtilis BSn5]
 gi|320019960|gb|ADV94946.1| tRNA specific adenosine deaminase [Bacillus subtilis BSn5]
          Length = 161

 Score = 36.6 bits (83), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 55/128 (42%), Gaps = 21/128 (16%)

Query: 29  PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
           P  A L+V D I I R      T      HAE+  ++EA +        GAT YVTLEPC
Sbjct: 25  PIGAVLVVNDEI-IARAHNLRETEQRSIAHAEMLVMDEACKALGTWRLEGATLYVTLEPC 83

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEG 134
                 P CA  ++   + +VV    DP    SG  +  L +     +  +V  ++E E 
Sbjct: 84  ------PMCAGAVVLSRVEKVVFGAFDPKGGCSGTLMNLLQEERFNHQAEVVSGVLEEEC 137

Query: 135 KIFLHAYL 142
              L A+ 
Sbjct: 138 GGMLSAFF 145


>gi|311070665|ref|YP_003975588.1| tRNA specific adenosine deaminase [Bacillus atrophaeus 1942]
 gi|310871182|gb|ADP34657.1| tRNA specific adenosine deaminase [Bacillus atrophaeus 1942]
          Length = 161

 Score = 36.6 bits (83), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 14/102 (13%)

Query: 29  PSVACLIVKDGIVI---GRGVTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
           P  A L++ D IV        T      HAE+ A++EA          GA+ YVTLEPC 
Sbjct: 25  PIGAVLVMNDDIVARAHNLRETEQRSIAHAEMLAIDEACRTLGTWRLEGASLYVTLEPC- 83

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                P CA  ++   + RVV    DP    SG  +  L ++
Sbjct: 84  -----PMCAGAVVLSRVDRVVFGAFDPKGGCSGTLMNLLQEE 120


>gi|283786173|ref|YP_003366038.1| tRNA-specific adenosine deaminase [Citrobacter rodentium ICC168]
 gi|282949627|emb|CBG89246.1| tRNA-specific adenosine deaminase [Citrobacter rodentium ICC168]
          Length = 180

 Score = 36.6 bits (83), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++V +  VIG G    +  +    HAE+ AL + G   +  R   AT YVTLEPC  
Sbjct: 43  VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLIDATLYVTLEPCV- 101

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  ++   I RVV    D     +G  +  L   G+
Sbjct: 102 -----MCAGAMVHSRISRVVFGARDAKTGAAGSLIDVLHHPGM 139


>gi|310722526|ref|YP_003969349.1| Cd dCMP deaminase [Aeromonas phage phiAS5]
 gi|306021369|gb|ADM79903.1| Cd dCMP deaminase [Aeromonas phage phiAS5]
          Length = 182

 Score = 36.6 bits (83), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 9/53 (16%)

Query: 54  HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           HAE+ A+      G+   GAT Y T+ PC      P CA+ I +  IR +V C
Sbjct: 91  HAEMNAILFAARGGKSIEGATMYCTMAPC------PDCAKMIAQSRIRTLVYC 137


>gi|51597197|ref|YP_071388.1| tRNA-specific adenosine deaminase [Yersinia pseudotuberculosis IP
           32953]
 gi|186896294|ref|YP_001873406.1| tRNA-specific adenosine deaminase [Yersinia pseudotuberculosis
           PB1/+]
 gi|51590479|emb|CAH22119.1| putative zinc-binding protein [Yersinia pseudotuberculosis IP
           32953]
 gi|186699320|gb|ACC89949.1| CMP/dCMP deaminase zinc-binding [Yersinia pseudotuberculosis PB1/+]
          Length = 187

 Score = 36.6 bits (83), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V    VIG G    +       HAE+ AL + G+  +      AT YVTLEPC  
Sbjct: 47  VGAVLVLGNKVIGEGWNRPIRDNDPTAHAEIMALRQGGQAVQNYRLLDATLYVTLEPCVM 106

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  ++   IRR+V   +D     +G  +  L   G+
Sbjct: 107 ------CAGAMVHSRIRRLVYGANDVKTGAAGSLVDILRHPGM 143


>gi|42521730|ref|NP_967110.1| cytidine/deoxycytidylate deaminase family protein [Bdellovibrio
          bacteriovorus HD100]
 gi|39574260|emb|CAE77764.1| cytidine/deoxycytidylate deaminase family protein [Bdellovibrio
          bacteriovorus HD100]
          Length = 155

 Score = 36.6 bits (83), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 10/82 (12%)

Query: 7  DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
          +  FM  A+  SR ++   +  P    +IVKDG +IG G     ++     HAEV A+ +
Sbjct: 2  NKEFMLRAIELSRNNMRAGAGGP-FGAVIVKDGKIIGEGWNKVTSSNDPTAHAEVSAIRD 60

Query: 63 A-----GEEARGATAYVTLEPC 79
          A       E  GA  Y + EPC
Sbjct: 61 ACSKISNFELAGAEIYTSCEPC 82


>gi|153948638|ref|YP_001400126.1| tRNA-specific adenosine deaminase [Yersinia pseudotuberculosis IP
           31758]
 gi|152960133|gb|ABS47594.1| tRNA-specific adenosine deaminase [Yersinia pseudotuberculosis IP
           31758]
          Length = 200

 Score = 36.6 bits (83), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V    VIG G    +       HAE+ AL + G+  +      AT YVTLEPC  
Sbjct: 60  VGAVLVLGNKVIGEGWNRPIRDNDPTAHAEIMALRQGGQAVQNYRLLDATLYVTLEPCVM 119

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  ++   IRR+V   +D     +G  +  L   G+
Sbjct: 120 ------CAGAMVHSRIRRLVYGANDVKTGAAGSLVDILRHPGM 156


>gi|297620926|ref|YP_003709063.1| tRNA-specific adenosine deaminase [Waddlia chondrophila WSU
           86-1044]
 gi|297376227|gb|ADI38057.1| tRNA-specific adenosine deaminase [Waddlia chondrophila WSU
           86-1044]
          Length = 176

 Score = 36.6 bits (83), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 22/127 (17%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ--AL 60
           D  +M AAL+   W   +    P V  ++VK+G VI RG            HAE+    +
Sbjct: 19  DETYMLAALK-EAWKAFVKGEVP-VGAILVKEGKVIARGHNQVEMLRDATAHAEMLCITV 76

Query: 61  EEAGEEA---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV-DDPDVRVSGRGL 116
            EA E+     GAT Y T+EPCS       CA  ++   + RV   V   PD+R    G 
Sbjct: 77  AEAAEDNWRLNGATLYCTIEPCSM------CAGAML---LSRVSTLVWGAPDIRHGANG- 126

Query: 117 QWLSQKG 123
            W++  G
Sbjct: 127 SWVNLFG 133


>gi|82701254|ref|YP_410820.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Nitrosospira multiformis ATCC 25196]
 gi|82409319|gb|ABB73428.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
           [Nitrosospira multiformis ATCC 25196]
          Length = 489

 Score = 36.6 bits (83), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 19/84 (22%)

Query: 45  GVTAYGGCPHAEVQALEEAGEEA---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV- 100
            ++ YG   HAE++A+  A       RG+T Y T  PC +      CA+ I+  GI +V 
Sbjct: 329 NISEYGRAVHAEMEAIISAARNGISIRGSTLYSTTYPCHN------CAKHIVAAGISKVR 382

Query: 101 ---------VVCVDDPDVRVSGRG 115
                     + + +  +  +GRG
Sbjct: 383 YIEPYPKSYAIKLHEDSIEANGRG 406


>gi|148262140|ref|YP_001228846.1| CMP/dCMP deaminase, zinc-binding [Geobacter uraniireducens Rf4]
 gi|146395640|gb|ABQ24273.1| tRNA-adenosine deaminase [Geobacter uraniireducens Rf4]
          Length = 176

 Score = 36.6 bits (83), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 17/120 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
           V   D  +M +A+R +            +  +IV+DG +I RG     G      HAE+ 
Sbjct: 18  VEKDDVWWMGSAIREA--EKAAERGEVPIGAVIVRDGKIISRGYNLREGKQDPAAHAELI 75

Query: 59  ALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+ +A ++       G T YVTLEPC        C   I+   + +VV    DP    +G
Sbjct: 76  AIRKAAKKLGNWRLAGTTLYVTLEPCIM------CMGAILLARVEKVVFGCYDPKGGAAG 129


>gi|326575668|gb|EGE25591.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis CO72]
          Length = 181

 Score = 36.6 bits (83), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 18/118 (15%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59
           S  D   M+ AL  ++   G       V  ++V +G ++G G    +T      HAE+ A
Sbjct: 22  SMHDVEMMNRALEIAKQ--GAKFGEIPVGAVVVYEGRILGEGYNCPITTQDPTAHAEIVA 79

Query: 60  LEEAGEE------ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +  A E        +G   YVTLEPC+       C   +I   I RVV    +P   V
Sbjct: 80  VRRACETLNNYRLPKGCILYVTLEPCTM------CFGTLIHARISRVVFGAFEPKAGV 131


>gi|116831274|gb|ABK28591.1| unknown [Arabidopsis thaliana]
          Length = 233

 Score = 36.6 bits (83), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 32/100 (32%)

Query: 32  ACLIVKDGIVIGRGVTAYG-GCP------------------------HAEVQA-LEEAGE 65
           ACL+ ++G+++G G   +  GC                         HAEV A L     
Sbjct: 92  ACLVSQNGVILGIGYNGFPRGCSDDKLPWAKKSRTGDPLETKYPYVCHAEVNAILNTNHA 151

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
            A G   YVT+ PC+       CA+ I++ G+  V+  V+
Sbjct: 152 SAAGQKLYVTMFPCNE------CAKIILQSGVAEVIYFVE 185


>gi|90108580|pdb|1Z3A|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From
           Escherichia Coli
 gi|90108581|pdb|1Z3A|B Chain B, Crystal Structure Of Trna Adenosine Deaminase Tada From
           Escherichia Coli
          Length = 168

 Score = 36.6 bits (83), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++V +  VIG G    +  +    HAE+ AL + G   +  R   AT YVTLEPC  
Sbjct: 31  VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 89

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  +I   I RVV    D     +G  +  L   G+
Sbjct: 90  -----MCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGM 127


>gi|22125207|ref|NP_668630.1| tRNA-specific adenosine deaminase [Yersinia pestis KIM 10]
 gi|162421541|ref|YP_001607945.1| tRNA-specific adenosine deaminase [Yersinia pestis Angola]
 gi|165928230|ref|ZP_02224062.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939213|ref|ZP_02227763.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008235|ref|ZP_02229133.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212350|ref|ZP_02238385.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399598|ref|ZP_02305122.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167421139|ref|ZP_02312892.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423684|ref|ZP_02315437.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167467717|ref|ZP_02332421.1| tRNA-specific adenosine deaminase [Yersinia pestis FV-1]
 gi|270489818|ref|ZP_06206892.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Yersinia pestis KIM D27]
 gi|294504520|ref|YP_003568582.1| deaminase [Yersinia pestis Z176003]
 gi|21958073|gb|AAM84881.1|AE013733_2 putative deaminase [Yersinia pestis KIM 10]
 gi|162354356|gb|ABX88304.1| tRNA-specific adenosine deaminase [Yersinia pestis Angola]
 gi|165912813|gb|EDR31440.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165919737|gb|EDR37070.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992617|gb|EDR44918.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206281|gb|EDR50761.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166960628|gb|EDR56649.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167052102|gb|EDR63510.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057854|gb|EDR67600.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|262362488|gb|ACY59209.1| deaminase [Yersinia pestis D106004]
 gi|262366507|gb|ACY63064.1| deaminase [Yersinia pestis D182038]
 gi|270338322|gb|EFA49099.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Yersinia pestis KIM D27]
 gi|294354979|gb|ADE65320.1| deaminase [Yersinia pestis Z176003]
          Length = 200

 Score = 36.6 bits (83), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++V    VIG G    +       HAE+ AL + G+  +      AT YVTLEPC  
Sbjct: 60  VGAVLVLGNKVIGEGWNRPIRDNDPTAHAEIMALRQGGQAVQNYRLLDATLYVTLEPCVM 119

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  ++   IRR+V   +D     +G  +  L   G+
Sbjct: 120 ------CAGAMVHSRIRRLVYGANDVKTGAAGSLVDILRHPGM 156


>gi|238897621|ref|YP_002923300.1| CMP/dCMP deaminase; zinc-binding [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229465378|gb|ACQ67152.1| CMP/dCMP deaminase; zinc-binding [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 168

 Score = 36.6 bits (83), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 47/116 (40%), Gaps = 18/116 (15%)

Query: 2   PVSSFDARF-MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           P S  D  + M  AL  +       S    +  ++V +   IG G    V  +    HAE
Sbjct: 9   PDSELDHHYWMRHALSLAE--QAQASGEVPIGAVVVVNNQSIGEGWNQSVMCHDPTAHAE 66

Query: 57  VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           + AL +AG   +      AT YVTLEPC        C   I+   IR +V    DP
Sbjct: 67  IIALRQAGRHQKNYRLVNATLYVTLEPCMM------CVGAIMHSRIRGLVYGAPDP 116


>gi|62858897|ref|NP_001016265.1| dCMP deaminase [Xenopus (Silurana) tropicalis]
 gi|89266721|emb|CAJ83844.1| deoxycytidylate deaminase [Xenopus (Silurana) tropicalis]
          Length = 190

 Score = 36.6 bits (83), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 11/71 (15%)

Query: 47  TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV- 104
           T Y    HAE+ A + +   + +G T YV L PC+       CA+ +I+ GI+ V+    
Sbjct: 88  TKYPYVCHAELNAIMNKNTADVKGCTMYVALFPCNE------CAKLVIQAGIKEVIFMSD 141

Query: 105 ---DDPDVRVS 112
              D PD++ +
Sbjct: 142 KYHDSPDMKAA 152


>gi|332707760|ref|ZP_08427787.1| tRNA-adenosine deaminase [Lyngbya majuscula 3L]
 gi|332353463|gb|EGJ32976.1| tRNA-adenosine deaminase [Lyngbya majuscula 3L]
          Length = 163

 Score = 36.6 bits (83), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 16/108 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
           ++M+ A+  ++   G     P  A ++  +G +I  G            HAE+ AL  AG
Sbjct: 16  KWMTVAIEIAQ-KAGEAGEVPVGAVIVDNEGKLIATGENRRERDKDPTAHAEILALRAAG 74

Query: 65  EEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           ++ +       T YVTLEPC      P CA  II   +  +V  VDDP
Sbjct: 75  QQLQSWHLNHCTLYVTLEPC------PMCAGAIILARLGLLVYGVDDP 116


>gi|237732543|ref|ZP_04563024.1| tRNA-specific adenosine deaminase [Citrobacter sp. 30_2]
 gi|226908082|gb|EEH94000.1| tRNA-specific adenosine deaminase [Citrobacter sp. 30_2]
          Length = 182

 Score = 36.6 bits (83), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++V +  VIG G    +  +    HAE+ AL + G   +  R   AT YVTLEPC  
Sbjct: 47  VGAVLVHNNRVIGEGWNRPIGHHDPTAHAEIMALRQGGLVLQNYRLLDATLYVTLEPCV- 105

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  ++   I RVV    D     +G  +  L   G+
Sbjct: 106 -----MCAGAMVHSRIGRVVFGARDAKTGAAGSLMDVLHHPGM 143


>gi|312219914|emb|CBX99856.1| hypothetical protein [Leptosphaeria maculans]
          Length = 259

 Score = 36.6 bits (83), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 17/100 (17%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE 65
           FM  A+  +   + L S    V C+ VKDG +IGRG+        G  HAE  A+     
Sbjct: 62  FMREAIAMAE--LALKSDETPVGCVFVKDGEIIGRGMNETNRTLNGTRHAEFVAIASILS 119

Query: 66  EA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           +           YVT+EPC        CA  + + GI+ V
Sbjct: 120 KHPISILNETDLYVTVEPCVM------CASMLRQYGIKAV 153


>gi|146339390|ref|YP_001204438.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bradyrhizobium sp. ORS278]
 gi|146192196|emb|CAL76201.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bradyrhizobium sp. ORS278]
          Length = 239

 Score = 36.6 bits (83), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 3/85 (3%)

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGR-GVTSLLVEGGAAVAHS 301
           V+++TE          R + ++ I+      DL ++L IL    GV  LL+EGG  V  +
Sbjct: 104 VVVLTEAVSDAHLAGLRSEGVSYIFAGATSIDLPRVLDILSRELGVKRLLLEGGGHVNGT 163

Query: 302 FINSRLVDSIILYRSQIVIGEGGIP 326
           F+ + LVD + L     V G  G P
Sbjct: 164 FLRAGLVDELNLVLCPAVDGAKGAP 188


>gi|115522956|ref|YP_779867.1| CMP/dCMP deaminase, zinc-binding [Rhodopseudomonas palustris
           BisA53]
 gi|115516903|gb|ABJ04887.1| tRNA-adenosine deaminase [Rhodopseudomonas palustris BisA53]
          Length = 148

 Score = 36.6 bits (83), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 15/100 (15%)

Query: 31  VACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEAG-----EEARGATAYVTLEPCSH 81
           + C+IV+DG VI     R ++      HAE+ A+ +A      E       YVTLEPC+ 
Sbjct: 25  IGCVIVRDGEVIATAHNRTLSDRDPTAHAEILAIRQAAASLGSERLVDCDLYVTLEPCTM 84

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                 CA  I    IRR+     DP       G ++ +Q
Sbjct: 85  ------CAGAISLARIRRLYYGASDPKGGAVESGARFFAQ 118


>gi|291085019|ref|ZP_06351792.2| tRNA-specific adenosine deaminase [Citrobacter youngae ATCC 29220]
 gi|291071670|gb|EFE09779.1| tRNA-specific adenosine deaminase [Citrobacter youngae ATCC 29220]
          Length = 154

 Score = 36.6 bits (83), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++V +  VIG G    +  +    HAE+ AL + G   +  R   AT YVTLEPC  
Sbjct: 19  VGAVLVHNNRVIGEGWNRPIGHHDPTAHAEIMALRQGGLVLQNYRLLDATLYVTLEPCV- 77

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  ++   I RVV    D     +G  +  L   G+
Sbjct: 78  -----MCAGAMVHSRIGRVVFGARDAKTGAAGSLMDVLHHPGM 115


>gi|86608124|ref|YP_476886.1| cytidine and deoxycytidylate deaminase family protein
           [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556666|gb|ABD01623.1| cytidine and deoxycytidylate deaminase family protein
           [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 171

 Score = 36.6 bits (83), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 11/61 (18%)

Query: 54  HAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+ AL +AG+     + +G   YVTLEPC      P CA  I +  + +V+   DDP 
Sbjct: 66  HAEILALRQAGQRLGDWQLQGCRLYVTLEPC------PMCAGAISQSRLAQVIYGADDPK 119

Query: 109 V 109
            
Sbjct: 120 A 120


>gi|312262684|gb|ADQ52979.1| Cd dCMP deaminase [Aeromonas phage PX29]
          Length = 182

 Score = 36.6 bits (83), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 9/55 (16%)

Query: 54  HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           HAE+ A+     +G+   GAT Y T+ PC      P CA+ I +  I+ +V C D
Sbjct: 91  HAEMNAILFAANSGKPIEGATMYCTMAPC------PECAKTIAQAKIKTLVYCED 139


>gi|303289711|ref|XP_003064143.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Micromonas pusilla CCMP1545]
 gi|226454459|gb|EEH51765.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Micromonas pusilla CCMP1545]
          Length = 371

 Score = 36.6 bits (83), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 7/56 (12%)

Query: 47  TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           T Y    HAE+ A + +  +   GAT YVT+ PC+       C++ II+ GI  VV
Sbjct: 199 TKYAYVCHAEMNAIMNKNSQSLNGATMYVTMYPCNE------CSKLIIQSGITEVV 248


>gi|88803350|ref|ZP_01118876.1| guanine deaminase [Polaribacter irgensii 23-P]
 gi|88780916|gb|EAR12095.1| guanine deaminase [Polaribacter irgensii 23-P]
          Length = 157

 Score = 36.6 bits (83), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 10/80 (12%)

Query: 9  RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64
           FMSAA++ +   +      P   C+IVKDG +IG G     +      HAEV A+ +A 
Sbjct: 6  EFMSAAVKAALKGMNNNEGGP-FGCIIVKDGAIIGSGNNKVTSTNDPTAHAEVTAIRDAC 64

Query: 65 E-----EARGATAYVTLEPC 79
          +     +  G   Y + EPC
Sbjct: 65 KNIGSFQLDGCIIYTSCEPC 84


>gi|325273807|ref|ZP_08139995.1| CMP/dCMP deaminase zinc-binding protein [Pseudomonas sp. TJI-51]
 gi|324101066|gb|EGB98724.1| CMP/dCMP deaminase zinc-binding protein [Pseudomonas sp. TJI-51]
          Length = 159

 Score = 36.6 bits (83), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 57/139 (41%), Gaps = 18/139 (12%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV--- 57
           S D  +M  AL  +     L      V  ++V+ G VIG+G    +       HAE+   
Sbjct: 9   SRDQEYMRLALSLAAEGAALGEV--PVGAVLVQHGQVIGQGFNRPIIDSDPSAHAEMVAI 66

Query: 58  --QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
              A   +     G+T YVTLEPCS       CA  I+   + RVV    +P   +    
Sbjct: 67  RAAAKAASNYRLPGSTLYVTLEPCSM------CAGLIVHSRVMRVVFGALEPKAGIVQSQ 120

Query: 116 LQWLSQKGIIVDRMMESEG 134
            Q+  Q G +  R+M   G
Sbjct: 121 GQFFGQ-GFLNHRVMVEGG 138


>gi|145698301|ref|NP_417054.2| tRNA-specific adenosine deaminase [Escherichia coli str. K-12
           substr. MG1655]
 gi|170082169|ref|YP_001731489.1| tRNA-specific adenosine deaminase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170682913|ref|YP_001744748.1| tRNA-specific adenosine deaminase [Escherichia coli SMS-3-5]
 gi|191167978|ref|ZP_03029780.1| tRNA-specific adenosine deaminase [Escherichia coli B7A]
 gi|194437606|ref|ZP_03069702.1| tRNA-specific adenosine deaminase [Escherichia coli 101-1]
 gi|238901724|ref|YP_002927520.1| tRNA-specific adenosine deaminase [Escherichia coli BW2952]
 gi|253772543|ref|YP_003035374.1| tRNA-specific adenosine deaminase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|256021756|ref|ZP_05435621.1| tRNA-specific adenosine deaminase [Escherichia sp. 4_1_40B]
 gi|260856653|ref|YP_003230544.1| tRNA-specific adenosine deaminase [Escherichia coli O26:H11 str.
           11368]
 gi|260869246|ref|YP_003235648.1| tRNA-specific adenosine deaminase [Escherichia coli O111:H- str.
           11128]
 gi|297516926|ref|ZP_06935312.1| tRNA-specific adenosine deaminase [Escherichia coli OP50]
 gi|307139195|ref|ZP_07498551.1| tRNA-specific adenosine deaminase [Escherichia coli H736]
 gi|307313870|ref|ZP_07593486.1| CMP/dCMP deaminase zinc-binding [Escherichia coli W]
 gi|150421688|sp|P68398|TADA_ECOLI RecName: Full=tRNA-specific adenosine deaminase
 gi|150421691|sp|P68397|TADA_SHIFL RecName: Full=tRNA-specific adenosine deaminase
 gi|145693172|gb|AAC75612.2| tRNA-specific adenosine deaminase [Escherichia coli str. K-12
           substr. MG1655]
 gi|169890004|gb|ACB03711.1| tRNA-specific adenosine deaminase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170520631|gb|ACB18809.1| tRNA-specific adenosine deaminase [Escherichia coli SMS-3-5]
 gi|190901985|gb|EDV61732.1| tRNA-specific adenosine deaminase [Escherichia coli B7A]
 gi|194423412|gb|EDX39403.1| tRNA-specific adenosine deaminase [Escherichia coli 101-1]
 gi|238863717|gb|ACR65715.1| tRNA-specific adenosine deaminase [Escherichia coli BW2952]
 gi|253323587|gb|ACT28189.1| CMP/dCMP deaminase zinc-binding [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|257755302|dbj|BAI26804.1| tRNA-specific adenosine deaminase [Escherichia coli O26:H11 str.
           11368]
 gi|257765602|dbj|BAI37097.1| tRNA-specific adenosine deaminase [Escherichia coli O111:H- str.
           11128]
 gi|260448361|gb|ACX38783.1| CMP/dCMP deaminase zinc-binding protein [Escherichia coli DH1]
 gi|306906371|gb|EFN36886.1| CMP/dCMP deaminase zinc-binding [Escherichia coli W]
 gi|313651052|gb|EFS15452.1| tRNA-specific adenosine deaminase [Shigella flexneri 2a str. 2457T]
 gi|313848716|emb|CAQ32934.2| tRNA-specific adenosine deaminase monomer, subunit of tRNA-specific
           adenosine deaminase [Escherichia coli BL21(DE3)]
 gi|315061878|gb|ADT76205.1| tRNA-specific adenosine deaminase [Escherichia coli W]
 gi|320186358|gb|EFW61092.1| tRNA-specific adenosine-34 deaminase [Shigella flexneri CDC 796-83]
 gi|320200123|gb|EFW74712.1| tRNA-specific adenosine-34 deaminase [Escherichia coli EC4100B]
 gi|323377541|gb|ADX49809.1| CMP/dCMP deaminase zinc-binding protein [Escherichia coli KO11]
 gi|323936299|gb|EGB32590.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Escherichia coli E1520]
 gi|323941178|gb|EGB37363.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Escherichia coli E482]
 gi|323944616|gb|EGB40684.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Escherichia coli H120]
 gi|323961174|gb|EGB56787.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Escherichia coli H489]
 gi|323971115|gb|EGB66362.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Escherichia coli TA007]
 gi|324113086|gb|EGC07062.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Escherichia fergusonii B253]
 gi|324118231|gb|EGC12127.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Escherichia coli E1167]
 gi|332092598|gb|EGI97670.1| tRNA-specific adenosine deaminase [Shigella boydii 3594-74]
 gi|332344434|gb|AEE57768.1| tRNA-specific adenosine deaminase [Escherichia coli UMNK88]
 gi|332756134|gb|EGJ86485.1| tRNA-specific adenosine deaminase [Shigella flexneri 2747-71]
 gi|332765914|gb|EGJ96125.1| tRNA-specific adenosine deaminase monomer [Shigella flexneri
           2930-71]
 gi|333002351|gb|EGK21915.1| tRNA-specific adenosine deaminase [Shigella flexneri K-272]
 gi|333016173|gb|EGK35505.1| tRNA-specific adenosine deaminase [Shigella flexneri K-227]
 gi|333016472|gb|EGK35803.1| tRNA-specific adenosine deaminase [Shigella flexneri K-304]
          Length = 167

 Score = 36.6 bits (83), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++V +  VIG G    +  +    HAE+ AL + G   +  R   AT YVTLEPC  
Sbjct: 30  VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 88

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  +I   I RVV    D     +G  +  L   G+
Sbjct: 89  -----MCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGM 126


>gi|332754174|gb|EGJ84543.1| tRNA-specific adenosine deaminase [Shigella flexneri K-671]
          Length = 156

 Score = 36.6 bits (83), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++V +  VIG G    +  +    HAE+ AL + G   +  R   AT YVTLEPC  
Sbjct: 19  VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 77

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  +I   I RVV    D     +G  +  L   G+
Sbjct: 78  -----MCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGM 115


>gi|21229604|ref|NP_635521.1| deoxycytidylate deaminase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66766481|ref|YP_241243.1| deoxycytidylate deaminase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21111078|gb|AAM39445.1| deoxycytidylate deaminase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66571813|gb|AAY47223.1| deoxycytidylate deaminase [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 150

 Score = 36.6 bits (83), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 49/124 (39%), Gaps = 39/124 (31%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP------ 53
           +  +D RF   A   S W     S +P+    A L  K G   G     Y G P      
Sbjct: 1   MQKWDVRFCDLARYISAW-----SKDPNAKVGAVLFSKKG---GNVSIGYNGFPIGVEDS 52

Query: 54  ---------------HAEVQALEEAGEEARGATAYVTLEP-CSHYGRSPPCAQFIIECGI 97
                          HAEV A+  AG  A G+T YV  +P C+       CA  II+ GI
Sbjct: 53  AERLTDKDVKLELVVHAEVNAIIAAGVRAEGSTIYVWGKPICAR------CAGPIIQAGI 106

Query: 98  RRVV 101
           +RVV
Sbjct: 107 KRVV 110


>gi|86607357|ref|YP_476120.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing
           protein [Synechococcus sp. JA-3-3Ab]
 gi|86555899|gb|ABD00857.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Synechococcus sp. JA-3-3Ab]
          Length = 174

 Score = 36.6 bits (83), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 11/61 (18%)

Query: 54  HAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+ AL +AG+     + +G   YVTLEPC      P CA  I +  + +V+   DDP 
Sbjct: 72  HAEILALRQAGQRLGDWQLQGCRLYVTLEPC------PMCAGAISQSRLAQVIYGADDPK 125

Query: 109 V 109
            
Sbjct: 126 A 126


>gi|169350292|ref|ZP_02867230.1| hypothetical protein CLOSPI_01036 [Clostridium spiroforme DSM 1552]
 gi|169293075|gb|EDS75208.1| hypothetical protein CLOSPI_01036 [Clostridium spiroforme DSM 1552]
          Length = 241

 Score = 36.6 bits (83), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 84/212 (39%), Gaps = 16/212 (7%)

Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
           I    +M  +GKI      T++ ++ S    +IA  ++      G  S  +T   +    
Sbjct: 7   IFCHMLMSLDGKIVGKYMDTKECDEPSEQFYEIAFGKNAYYKHQGWLSGRVTTDDNFTMY 66

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII--KTAL 241
              +    A +V  G  +AD             +S   + +DP  KL   S  +  +T  
Sbjct: 67  RKPKLDKTAPIVPSGDFIADG-----------NYSMYYVSIDPLGKLGWQSNTLTYETTT 115

Query: 242 LAPVIIVTENDDPVLALAFRKKNIN--IIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAV 298
              + ++TE          RK NI+  I+  D  D K L+  L  +  + +L++ GG  +
Sbjct: 116 AHVLEVLTEKASSAYKAMLRKLNISYVIVGKDELDYKLLMEKLYHKFNIKTLMLGGGGVL 175

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
             SFI + L D + L  + +  G    PS  E
Sbjct: 176 NWSFIQTGLCDELSLVMAPVADGASQSPSIFE 207


>gi|332800258|ref|YP_004461757.1| CMP/dCMP deaminase zinc-binding protein [Tepidanaerobacter sp. Re1]
 gi|332697993|gb|AEE92450.1| CMP/dCMP deaminase zinc-binding protein [Tepidanaerobacter sp. Re1]
          Length = 160

 Score = 36.6 bits (83), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 20/119 (16%)

Query: 1   MPVSSF---DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCP 53
           MP   +   D  FM  A++ ++  + +      +  +IVK   VI R      T      
Sbjct: 1   MPTLEYQKDDFFFMRQAIQEAKRAMEIDEV--PIGAVIVKADEVIARAHNLRETLQDATA 58

Query: 54  HAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           HAE+ A+ +A E        G T YVTLEPC      P CA  +I   + R+V    DP
Sbjct: 59  HAELLAIRKACEVLGTWRLEGCTLYVTLEPC------PMCAGAVILSRVDRLVFGAKDP 111


>gi|297819466|ref|XP_002877616.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
           lyrata subsp. lyrata]
 gi|297323454|gb|EFH53875.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 232

 Score = 36.6 bits (83), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 32/100 (32%)

Query: 32  ACLIVKDGIVIGRGVTAYG-GCP------------------------HAEVQA-LEEAGE 65
           ACL+ ++G+++G G   +  GC                         HAEV A L     
Sbjct: 92  ACLVSQNGVILGIGYNGFPRGCSDDKLPWAKKSRTGDPLETKYPYVCHAEVNAILNTNHA 151

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
            A G   YVT+ PC+       CA+ I++ G+  V+  V+
Sbjct: 152 SAAGQKLYVTMFPCNE------CAKIILQSGVAEVIYFVE 185


>gi|311746929|ref|ZP_07720714.1| cytidine/deoxycytidylate deaminase family protein [Algoriphagus sp.
           PR1]
 gi|126578621|gb|EAZ82785.1| cytidine/deoxycytidylate deaminase family protein [Algoriphagus sp.
           PR1]
          Length = 160

 Score = 36.6 bits (83), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 11/83 (13%)

Query: 54  HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           HAE  A+  A        G+T YVTL PC        CA+ I   GI +VV      + +
Sbjct: 75  HAEQNAILYAVKNNTSVEGSTLYVTLAPC------LACARIIFSMGISKVVYLFSYAEYK 128

Query: 111 VSG--RGLQWLSQKGIIVDRMME 131
             G   G+ +L + GI VDR  +
Sbjct: 129 GIGTDEGVDFLRKFGIKVDRYTK 151


>gi|319943546|ref|ZP_08017828.1| tRNA-specific adenosine deaminase [Lautropia mirabilis ATCC 51599]
 gi|319743361|gb|EFV95766.1| tRNA-specific adenosine deaminase [Lautropia mirabilis ATCC 51599]
          Length = 206

 Score = 36.6 bits (83), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           V  ++VK G VI  G    + ++    HAE++ L  A E+        +T YVTLEPC  
Sbjct: 43  VGAVLVKAGQVIATGYNHPIGSHDPTAHAEIRTLRMAAEQLGNYRVGESTLYVTLEPCMM 102

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 C   ++   I RVV    DP   V G
Sbjct: 103 ------CLGAMLHARISRVVFGAPDPKTGVCG 128


>gi|168757783|ref|ZP_02782790.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4401]
 gi|168768660|ref|ZP_02793667.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4486]
 gi|188024727|ref|ZP_02773396.2| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4113]
 gi|189403941|ref|ZP_02786184.2| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4501]
 gi|195936706|ref|ZP_03082088.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4024]
 gi|208806459|ref|ZP_03248796.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812941|ref|ZP_03254270.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820370|ref|ZP_03260690.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400171|ref|YP_002272033.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4115]
 gi|215487903|ref|YP_002330334.1| tRNA-specific adenosine deaminase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217327122|ref|ZP_03443205.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           TW14588]
 gi|254794508|ref|YP_003079345.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           TW14359]
 gi|261223005|ref|ZP_05937286.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261259444|ref|ZP_05951977.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|306814377|ref|ZP_07448539.1| tRNA-specific adenosine deaminase [Escherichia coli NC101]
 gi|150421686|sp|Q8XA44|TADA_ECO57 RecName: Full=tRNA-specific adenosine deaminase
 gi|150421687|sp|Q8FF24|TADA_ECOL6 RecName: Full=tRNA-specific adenosine deaminase
 gi|188017152|gb|EDU55274.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4113]
 gi|189355294|gb|EDU73713.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362211|gb|EDU80630.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368357|gb|EDU86773.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4501]
 gi|208726260|gb|EDZ75861.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734218|gb|EDZ82905.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740493|gb|EDZ88175.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161571|gb|ACI39004.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4115]
 gi|215265975|emb|CAS10384.1| tRNA-specific adenosine deaminase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217319489|gb|EEC27914.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           TW14588]
 gi|254593908|gb|ACT73269.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           TW14359]
 gi|305851771|gb|EFM52223.1| tRNA-specific adenosine deaminase [Escherichia coli NC101]
 gi|312947130|gb|ADR27957.1| tRNA-specific adenosine deaminase [Escherichia coli O83:H1 str. NRG
           857C]
 gi|320180559|gb|EFW55490.1| tRNA-specific adenosine-34 deaminase [Shigella boydii ATCC 9905]
 gi|320188900|gb|EFW63559.1| tRNA-specific adenosine-34 deaminase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320640908|gb|EFX10396.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           G5101]
 gi|320646350|gb|EFX15277.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H- str.
           493-89]
 gi|320651530|gb|EFX19917.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H- str. H
           2687]
 gi|320657241|gb|EFX25050.1| tRNA-specific adenosine deaminase [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662847|gb|EFX30179.1| tRNA-specific adenosine deaminase [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320667651|gb|EFX34566.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323955795|gb|EGB51553.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Escherichia coli H263]
 gi|323968007|gb|EGB63419.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Escherichia coli M863]
 gi|326340365|gb|EGD64169.1| tRNA-specific adenosine-34 deaminase [Escherichia coli O157:H7 str.
           1125]
 gi|332088011|gb|EGI93136.1| tRNA-specific adenosine deaminase [Shigella boydii 5216-82]
 gi|332089781|gb|EGI94882.1| tRNA-specific adenosine deaminase [Shigella dysenteriae 155-74]
          Length = 167

 Score = 36.6 bits (83), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++V +  VIG G    +  +    HAE+ AL + G   +  R   AT YVTLEPC  
Sbjct: 30  VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 88

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 CA  +I   I RVV    D     +G  +  L   G+
Sbjct: 89  -----MCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGM 126


>gi|83588899|ref|YP_428908.1| tRNA-adenosine deaminase [Moorella thermoacetica ATCC 39073]
 gi|83571813|gb|ABC18365.1| tRNA-adenosine deaminase [Moorella thermoacetica ATCC 39073]
          Length = 150

 Score = 36.6 bits (83), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 48/110 (43%), Gaps = 19/110 (17%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65
           +M  AL  +R    L      +  +IV  G +I R      T      HAE+ AL  A  
Sbjct: 6   YMGEALDEARKAFDLGEV--PIGAVIVAGGEIIARAGNRRETLADPTAHAEIIALRAAAR 63

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
                   GAT YVTLEPC      P CA  +++  IR++V     PD+R
Sbjct: 64  VRGDWRLTGATLYVTLEPC------PMCAGALVQARIRQLVYGA--PDLR 105


>gi|255021639|ref|ZP_05293681.1| tRNA-specific adenosine-34 deaminase [Acidithiobacillus caldus ATCC
           51756]
 gi|254968899|gb|EET26419.1| tRNA-specific adenosine-34 deaminase [Acidithiobacillus caldus ATCC
           51756]
          Length = 178

 Score = 36.6 bits (83), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 16/110 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  +M  AL  +R    L    P  A L+   G ++ R     +     C HAE+  L E
Sbjct: 24  DRHWMGLALEQARC-ASLVGEVPVGAVLLSASGALLARAHNRPIAMQDPCAHAEILVLRE 82

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           A          G T YVTLEPC+       CA  +++  + ++V    DP
Sbjct: 83  AARALGNYRLLGTTLYVTLEPCAM------CAGAMLQARVAQLVFAARDP 126


>gi|326792204|ref|YP_004310025.1| dCMP deaminase [Clostridium lentocellum DSM 5427]
 gi|326542968|gb|ADZ84827.1| dCMP deaminase [Clostridium lentocellum DSM 5427]
          Length = 169

 Score = 36.6 bits (83), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 7/60 (11%)

Query: 47  TAYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           T Y    HAE+ A+  A G+   GA  YV L PC+       C + II+CGI+ V+   D
Sbjct: 77  TKYPFVVHAELNAILNARGKSLVGARIYVALFPCNE------CCKAIIQCGIKEVIYLSD 130


>gi|126668408|ref|ZP_01739365.1| hypothetical protein MELB17_14743 [Marinobacter sp. ELB17]
 gi|126627117|gb|EAZ97757.1| hypothetical protein MELB17_14743 [Marinobacter sp. ELB17]
          Length = 167

 Score = 36.6 bits (83), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 15/86 (17%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           V  ++V DG  +G G    +++     HAE+ AL +A          GAT YVTLEPC+ 
Sbjct: 34  VGAVVVIDGQEVGAGFNKPISSCDPTAHAEICALRQAATYLNNYRLSGATLYVTLEPCTM 93

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDP 107
                 C   I+   I RVV    +P
Sbjct: 94  ------CVGAIVHSRISRVVYGATEP 113


>gi|269986852|gb|EEZ93129.1| dihydrofolate reductase region [Candidatus Parvarchaeum acidiphilum
           ARMAN-4]
          Length = 171

 Score = 36.6 bits (83), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 5/98 (5%)

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
           +  +K+  N+I  D +  K+++ I+  +G +S +V GGA +A SF+   LV+ I L    
Sbjct: 74  IKLKKEWKNVIVTDKKP-KEIIRIIEEKGYSSAMVAGGA-LATSFLKENLVNEIYLNIEP 131

Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEY 354
           + +G+ GIP    E + EK    ++   F  D V L Y
Sbjct: 132 LALGK-GIPLFSNENF-EKKLKLLQVKRFSKDEVRLHY 167


>gi|254567633|ref|XP_002490927.1| Cytosine deaminase, zinc metalloenzyme that catalyzes the
           hydrolytic deamination of cytosine to urac [Pichia
           pastoris GS115]
 gi|238030724|emb|CAY68647.1| Cytosine deaminase, zinc metalloenzyme that catalyzes the
           hydrolytic deamination of cytosine to urac [Pichia
           pastoris GS115]
 gi|328352537|emb|CCA38936.1| cytosine deaminase [Pichia pastoris CBS 7435]
          Length = 150

 Score = 36.6 bits (83), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 14/82 (17%)

Query: 29  PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG----EEARGATAYVTLEPCS 80
           P  A L+ +DG V+G G    +       HAE+ ALE AG    +  +  T Y TL PC 
Sbjct: 26  PIGAALVSEDGTVLGVGHNLRIQKGSSVFHAEMSALENAGRLPGKTYKNCTMYTTLSPCH 85

Query: 81  HYGRSPPCAQFIIECGIRRVVV 102
                  C+   +  GI+RVV+
Sbjct: 86  M------CSGACLMYGIKRVVL 101


>gi|219120746|ref|XP_002181105.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407821|gb|EEC47757.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 693

 Score = 36.6 bits (83), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 74/192 (38%), Gaps = 39/192 (20%)

Query: 28  NPSV-ACLIVKDGIVIG-----------RGVTAYGG---CPHAEVQALEEAGEEARG--- 69
            P+V A L+  DG ++G           R   A  G    P +E      + E+ R    
Sbjct: 125 KPTVGAVLVADDGRILGKARSDFRNDAVRAAIAQAGLEVTPLSEWCVSWPSSEQLRKDLE 184

Query: 70  -ATAYVTLEPCSHYGRS--PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            +T YVTLEP S    +  PP  Q I   GI RVV+   DP      +G   L   GI V
Sbjct: 185 TSTLYVTLEPSSEREGTALPPITQLIELVGIPRVVIGCADPIQERHSKGAAALHSAGIEV 244

Query: 127 DRM---MESEGKIFLHAYLTRQVEK-----RSHITLK---------IAVSQDNMIGMAGC 169
            RM   +E E +  + AY      K     R+H  L            V  DN+   A  
Sbjct: 245 -RMGSVLEEECENLIVAYAQLANSKLHKMARTHFNLFGRPLGFLHCSVVDSDNIEAFARQ 303

Query: 170 GSVPITGFISKN 181
           G+   T F  +N
Sbjct: 304 GNAFGTKFGGQN 315


>gi|193212272|ref|YP_001998225.1| CMP/dCMP deaminase zinc-binding [Chlorobaculum parvum NCIB 8327]
 gi|193085749|gb|ACF11025.1| CMP/dCMP deaminase zinc-binding [Chlorobaculum parvum NCIB 8327]
          Length = 148

 Score = 36.6 bits (83), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 19/134 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM+ AL  +R           V  ++V++G +I  G    V       H E+  + +
Sbjct: 4   DREFMALALEQAR--KSYEEGGVPVGAVMVENGKLIAAGHNQRVQNADPIAHGEMDCIRK 61

Query: 63  AGEEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           AG  AR    T Y TL PC        CA  I++ GI RVVV  D    R      ++L 
Sbjct: 62  AGRRARYDTVTLYTTLSPCMM------CAGAIVQFGIGRVVVGED----RNFKGNAEFLR 111

Query: 121 QKGIIVDRMMESEG 134
           + G+ V  +++ EG
Sbjct: 112 EHGVEV-TLLDDEG 124


>gi|186684043|ref|YP_001867239.1| CMP/dCMP deaminase, zinc-binding [Nostoc punctiforme PCC 73102]
 gi|186466495|gb|ACC82296.1| CMP/dCMP deaminase, zinc-binding [Nostoc punctiforme PCC 73102]
          Length = 161

 Score = 36.6 bits (83), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 30/106 (28%)

Query: 54  HAEVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD-- 106
           HAE+ AL+ A    +       T YVTLEPC      P CA  I++  + ++V  VDD  
Sbjct: 61  HAEILALKTAATTLQNWHLNECTLYVTLEPC------PMCAGAILQARVGQLVYGVDDTK 114

Query: 107 ----------PDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
                     PD   S  GLQ       ++  ++ES  +  L A+ 
Sbjct: 115 TGAIRTVINIPDSAASNHGLQ-------VIGGILESACREQLQAWF 153


>gi|303232398|ref|ZP_07319090.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Atopobium vaginae PB189-T1-4]
 gi|302481482|gb|EFL44550.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Atopobium vaginae PB189-T1-4]
          Length = 164

 Score = 36.2 bits (82), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           +  ++V +G +I R       +     HAE  A++ A E  +     G T YVTLEPC  
Sbjct: 40  IGAVVVYNGAIIARAHNTREESTNPAGHAEFLAMQHAAETLQRWRLFGCTVYVTLEPCLM 99

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 CA  ++   I R V    DP     G
Sbjct: 100 ------CAGLMLNARIDRCVYAASDPKAGAVG 125


>gi|120403479|ref|YP_953308.1| hypothetical protein Mvan_2490 [Mycobacterium vanbaalenii PYR-1]
 gi|119956297|gb|ABM13302.1| bifunctional deaminase-reductase domain protein [Mycobacterium
           vanbaalenii PYR-1]
          Length = 264

 Score = 36.2 bits (82), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 12/150 (8%)

Query: 186 LRAQSDAILVGIGTVLADD--------PELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
           LR  +D I+VG  TV  ++         E   R    Q   P   +L     L  D+K+ 
Sbjct: 72  LRDLADVIVVGAATVRVENYSGVQLGAAERLARQRRGQAEVPPVAVLTRSGLLDRDAKLF 131

Query: 238 KTALLAPVIIVT----ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
               + P+I+ +    E+    L       + +    D  DL+  L +L  RG+  +L E
Sbjct: 132 HLTDVPPLILTSSDAVEDTRQRLGAVAEVVDASGPAPDSVDLRTALDLLAERGLVRVLTE 191

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GG  +   F    L+D + L  + +++G G
Sbjct: 192 GGPGILGMFTEQDLLDELCLTVAPLLLGGG 221


>gi|301165417|emb|CBW24988.1| putative nucleotide deaminase [Bacteriovorax marinus SJ]
          Length = 158

 Score = 36.2 bits (82), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 11/61 (18%)

Query: 52  CPHAEVQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           C HAE+ A+ EA ++       G T YVTLEPC      P C   +I+  + ++V    D
Sbjct: 55  CGHAEIIAIREACKKRGDWRLSGCTIYVTLEPC------PMCLSAMIQARVDKLVFAAYD 108

Query: 107 P 107
           P
Sbjct: 109 P 109


>gi|239833547|ref|ZP_04681875.1| CMP/dCMP deaminase zinc-binding [Ochrobactrum intermedium LMG 3301]
 gi|239821610|gb|EEQ93179.1| CMP/dCMP deaminase zinc-binding [Ochrobactrum intermedium LMG 3301]
          Length = 173

 Score = 36.2 bits (82), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 40/91 (43%), Gaps = 25/91 (27%)

Query: 31  VACLIVKDGIVIGRG---------VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTL 76
           +  +IV  G +I R          VTA     HAEV A+ EAGE  +     G   YVTL
Sbjct: 50  IGAVIVHQGTIIARAGNRTRELNDVTA-----HAEVLAIREAGETLQSERLVGCDLYVTL 104

Query: 77  EPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           EPC+       CA  I    IRR+     DP
Sbjct: 105 EPCAM------CAAAISFARIRRLYYGATDP 129


>gi|290558972|gb|EFD92355.1| CMP/dCMP deaminase zinc-binding [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 159

 Score = 36.2 bits (82), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 51/137 (37%), Gaps = 47/137 (34%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M   S+D  F     + S      T      AC+IVK+  ++  G   Y G P       
Sbjct: 1   MSRPSWDEYFTEITKKVSERS---TCDRGHAACVIVKENRILATG---YAGSPKGMPHCD 54

Query: 54  -------------------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
                                    HAE  A+ +A   G     +TAY+T+EPC      
Sbjct: 55  DVGHLLRKQYDNETGEITVHCLRTVHAEQNAITQAAKFGVSLSDSTAYITMEPCF----- 109

Query: 86  PPCAQFIIECGIRRVVV 102
             CA+ +++ GI+RVV 
Sbjct: 110 -TCAKMLVQVGIKRVVA 125


>gi|255994428|ref|ZP_05427563.1| cytidine/deoxycytidylate deaminase family protein [Eubacterium
           saphenum ATCC 49989]
 gi|255993141|gb|EEU03230.1| cytidine/deoxycytidylate deaminase family protein [Eubacterium
           saphenum ATCC 49989]
          Length = 155

 Score = 36.2 bits (82), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 13/76 (17%)

Query: 54  HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           HAE  A+ +   +G+   GAT Y+T +PC        C++ II  GI+R+VV    PD  
Sbjct: 83  HAEQNAIIQCAMSGQNIEGATIYITHQPCI------ICSKMIINAGIKRIVVREGYPD-- 134

Query: 111 VSGRGLQWLSQKGIIV 126
                 Q LS+ G+ +
Sbjct: 135 --NLAKQILSEAGLSI 148


>gi|291482388|dbj|BAI83463.1| hypothetical protein BSNT_00036 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 161

 Score = 36.2 bits (82), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 55/128 (42%), Gaps = 21/128 (16%)

Query: 29  PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
           P  A L+V D I I R      T      HAE+  ++EA +        GAT YVTLEPC
Sbjct: 25  PIGAVLVVNDEI-IARAHNLRETEQRSIAHAEMLVIDEACKALGTWRLEGATLYVTLEPC 83

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEG 134
                 P CA  ++   + +VV    DP    SG  +  L +     +  +V  ++E E 
Sbjct: 84  ------PMCAGAVVLSRVEKVVFGAFDPKGGCSGTLMNLLQEERFNHQAEVVSGVLEEEC 137

Query: 135 KIFLHAYL 142
              L A+ 
Sbjct: 138 GGMLSAFF 145


>gi|302534595|ref|ZP_07286937.1| gp20 [Streptomyces sp. C]
 gi|302443490|gb|EFL15306.1| gp20 [Streptomyces sp. C]
          Length = 117

 Score = 36.2 bits (82), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 27/56 (48%), Gaps = 9/56 (16%)

Query: 49  YGGCP--HAEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           Y  C   HAE  A+  A   + RG+T YVT  PC      P C   I   GIRRVV
Sbjct: 66  YSNCAAVHAEANAIHHADPTQLRGSTLYVTRMPC------PACTTLIRSAGIRRVV 115


>gi|312113039|ref|YP_004010635.1| CMP/dCMP deaminase zinc-binding protein [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311218168|gb|ADP69536.1| CMP/dCMP deaminase zinc-binding protein [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 157

 Score = 36.2 bits (82), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 20/140 (14%)

Query: 28  NPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEP 78
            P  A ++  DG + GRG    ++      HAE++A+ +A E  +     G   YVTLEP
Sbjct: 17  TPVGAVVVAPDGSIAGRGHNLVISVRDPFGHAEMRAIRQACEAVQSERLPGYDLYVTLEP 76

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESE 133
           C+       CA  I    IRR+     D        G+++ S         I   + ++E
Sbjct: 77  CTM------CAAAISFARIRRLYFGAWDEKGGAVENGVRFFSAATCHHAPEIYGGIAQAE 130

Query: 134 GKIFLHAYLTRQVEKRSHIT 153
               L A+   + ++R+ + 
Sbjct: 131 AAALLRAFFQERRDERAQVN 150


>gi|254457747|ref|ZP_05071175.1| deoxycytidylate deaminase [Campylobacterales bacterium GD 1]
 gi|207086539|gb|EDZ63823.1| deoxycytidylate deaminase [Campylobacterales bacterium GD 1]
          Length = 147

 Score = 36.2 bits (82), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 39/101 (38%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP---------------------------HAEVQALEEA 63
           V  +IVKDG ++  G   Y G P                           HAE+ A+  A
Sbjct: 25  VGAVIVKDGRILSTG---YNGTPAGFTNCCDHWNGEYTPDHHEWSKTYEIHAEMNAIIWA 81

Query: 64  GEEA---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
             +     GA+ +VTLEPCS       C++ +I  GI+R+V
Sbjct: 82  ARKGISIEGASIFVTLEPCS------ECSKNLIASGIKRIV 116


>gi|164686927|ref|ZP_02210955.1| hypothetical protein CLOBAR_00529 [Clostridium bartlettii DSM
           16795]
 gi|164604030|gb|EDQ97495.1| hypothetical protein CLOBAR_00529 [Clostridium bartlettii DSM
           16795]
          Length = 150

 Score = 36.2 bits (82), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 15/81 (18%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           +  +IVKD  +IGRG     T      HAE+ A+++A E   G        YVT+EPC  
Sbjct: 25  IGAVIVKDSEIIGRGHNLTETLRDSTAHAEMLAIKDASETLGGWRLTDCDLYVTMEPC-- 82

Query: 82  YGRSPPCAQFIIECGIRRVVV 102
                 C+  I+   I+ +++
Sbjct: 83  ----IMCSGAIVNSRIKNIII 99


>gi|77917942|ref|YP_355757.1| putative deaminase [Pelobacter carbinolicus DSM 2380]
 gi|77544025|gb|ABA87587.1| tRNA-adenosine deaminase [Pelobacter carbinolicus DSM 2380]
          Length = 159

 Score = 36.2 bits (82), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 43/92 (46%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           V  ++VKDG++IGRG     T+     HAE+ A+ +A          G T YVTLEPC  
Sbjct: 19  VGAVVVKDGMIIGRGHNLRETSNDPTTHAEMIAIRQAAAAIDSWRLIGCTLYVTLEPCVM 78

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 C   II   I R+V    DP V   G
Sbjct: 79  ------CMGAIILARIPRLVFGSRDPRVGAVG 104


>gi|291518542|emb|CBK73763.1| Pyrimidine reductase, riboflavin biosynthesis [Butyrivibrio
           fibrisolvens 16/4]
          Length = 107

 Score = 36.2 bits (82), Expect = 7.6,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           DL +L+  L   G+ S+L+EGG  + +S + S++VD I ++ +  + G G   SP+E
Sbjct: 19  DLNELMGKLGSLGIDSVLLEGGGTLNYSALESKIVDEIHIHIAPKIFG-GSSKSPVE 74


>gi|166368572|ref|YP_001660845.1| cytidine and deoxycytidylate deaminase [Microcystis aeruginosa
           NIES-843]
 gi|166090945|dbj|BAG05653.1| cytidine and deoxycytidylate deaminase [Microcystis aeruginosa
           NIES-843]
          Length = 162

 Score = 36.2 bits (82), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 15/92 (16%)

Query: 29  PSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
           P  A ++ K G +I +G       +    HAE+ A+  A +          T YVTLEPC
Sbjct: 37  PVGAVIVDKQGHLIAQGANCKEKHHDPTAHAEILAIRAASQVLGNWHLNDCTLYVTLEPC 96

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
                 P CA  II+  +  +V   DDP   V
Sbjct: 97  ------PMCAGAIIQARLGLLVYGADDPKTGV 122


>gi|163961159|gb|ABY50083.1| cytosine deaminase [Candida tropicalis]
          Length = 120

 Score = 36.2 bits (82), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 34  LIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG----EEARGATAYVTLEPCSHYGRS 85
           +I  DG V+G+G    +       H E+ ALE+AG    +  +  T Y TL PC+     
Sbjct: 1   IISSDGKVLGKGHNERIQKGSAILHGEMSALEDAGRLPGKAYKDCTIYTTLSPCNM---- 56

Query: 86  PPCAQFIIECGIRRVVV 102
             C   I+  GI+RVV+
Sbjct: 57  --CTGAILLYGIKRVVM 71


>gi|16077086|ref|NP_387899.1| tRNA specific adenosine deaminase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221307827|ref|ZP_03589674.1| hypothetical protein Bsubs1_00090 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312149|ref|ZP_03593954.1| hypothetical protein BsubsN3_00090 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317082|ref|ZP_03598376.1| hypothetical protein BsubsJ_00090 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321345|ref|ZP_03602639.1| hypothetical protein BsubsS_00090 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|112703|sp|P21335|TADA_BACSU RecName: Full=tRNA-specific adenosine deaminase
 gi|40011|emb|CAA36389.1| unnamed protein product [Bacillus subtilis subsp. subtilis str.
           168]
 gi|467408|dbj|BAA05254.1| unknown [Bacillus subtilis]
 gi|2632285|emb|CAB11794.1| tRNA specific adenosine deaminase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|227231|prf||1617102A 17kD protein
          Length = 161

 Score = 36.2 bits (82), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 20/126 (15%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81
           +  ++V +G +I R      T      HAE+  ++EA +        GAT YVTLEPC  
Sbjct: 26  IGAVLVINGEIIARAHNLRETEQRSIAHAEMLVIDEACKALGTWRLEGATLYVTLEPC-- 83

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGKI 136
               P CA  ++   + +VV    DP    SG  +  L +     +  +V  ++E E   
Sbjct: 84  ----PMCAGAVVLSRVEKVVFGAFDPKGGCSGTLMNLLQEERFNHQAEVVSGVLEEECGG 139

Query: 137 FLHAYL 142
            L A+ 
Sbjct: 140 MLSAFF 145


>gi|254520799|ref|ZP_05132855.1| CMP/dCMP deaminase [Clostridium sp. 7_2_43FAA]
 gi|226914548|gb|EEH99749.1| CMP/dCMP deaminase [Clostridium sp. 7_2_43FAA]
          Length = 147

 Score = 36.2 bits (82), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 11/70 (15%)

Query: 53  PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
            HAE+ A+EEA ++       G   YVTLEPC      P CA  I +  I R+ +   + 
Sbjct: 48  AHAEILAIEEACKKLNNWRLSGCEMYVTLEPC------PMCAAAIAQSRISRLFIGTFNK 101

Query: 108 DVRVSGRGLQ 117
           D+   G  + 
Sbjct: 102 DMGACGSTIN 111


>gi|50730877|ref|XP_417059.1| PREDICTED: similar to protein kinase NYD-SP15 [Gallus gallus]
          Length = 495

 Score = 36.2 bits (82), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 11/104 (10%)

Query: 17  FSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP----HAEVQALEEAGEEARGAT 71
           FS W     ST       + K G+V+ + +T  G  C     HA   AL + G + +   
Sbjct: 45  FSLWMELFPSTEQRKKSQVKKSGLVVVKNMTIIGLHCSSTDLHAGQIALIKHGSKLKNCD 104

Query: 72  AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            Y + +PCS       C + I+  G+ R+     DP++ +    
Sbjct: 105 LYFSRKPCS------TCLKMIVNAGVNRISYWPADPEISLQNEA 142


>gi|326803497|ref|YP_004321315.1| ComE operon protein 2 [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650126|gb|AEA00309.1| ComE operon protein 2 [Aerococcus urinae ACS-120-V-Col10a]
          Length = 170

 Score = 36.2 bits (82), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 50/122 (40%), Gaps = 31/122 (25%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP--- 53
           +D  F+S AL  S   +  T     V  +IV+D  VI  G           + GGC    
Sbjct: 6   WDQYFLSQALVLS---MRSTCDRLMVGAVIVRDNRVIAGGYNGSVSGETHCSEGGCYLED 62

Query: 54  -------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE+ A+    + G    GA  YVT  PC       PC + II+ GI++V   
Sbjct: 63  GHCVRTIHAEMNAIIQCAKFGVSTEGAEIYVTHFPC------LPCTKQIIQAGIKKVSYL 116

Query: 104 VD 105
            D
Sbjct: 117 YD 118


>gi|257899803|ref|ZP_05679456.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium Com15]
 gi|293571142|ref|ZP_06682180.1| tRNA-specific adenosine deaminase [Enterococcus faecium E980]
 gi|257837715|gb|EEV62789.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium Com15]
 gi|291608755|gb|EFF38039.1| tRNA-specific adenosine deaminase [Enterococcus faecium E980]
          Length = 165

 Score = 36.2 bits (82), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 15/101 (14%)

Query: 31  VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  ++V +G VIG+G     T      HAE+ A++EA E+        A+ +VTLEPC  
Sbjct: 33  IGAVVVLEGEVIGKGYNLRETTQDATTHAEMLAIKEACEKVGSWRLENASLFVTLEPC-- 90

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
               P C+  +I   +  V     DP    +G  +  L  +
Sbjct: 91  ----PMCSGAMILSRVAEVYFGAYDPKGGTAGTLMNLLEDE 127


>gi|212635213|ref|YP_002311738.1| dihydrofolate reductase [Shewanella piezotolerans WP3]
 gi|212556697|gb|ACJ29151.1| Dihydrofolate reductase, putative [Shewanella piezotolerans WP3]
          Length = 186

 Score = 36.2 bits (82), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           +L  L+  L   G     ++GGA +  SF+N +L++ II+ R+ +++GEG
Sbjct: 104 ELTALIAKLESEGHQHAYIDGGATI-QSFLNLKLINEIIITRAPVILGEG 152


>gi|171911154|ref|ZP_02926624.1| cytidine/deoxycytidylate deaminase family protein [Verrucomicrobium
           spinosum DSM 4136]
          Length = 176

 Score = 36.2 bits (82), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 50/125 (40%), Gaps = 27/125 (21%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  +M  ALR +R           +  +IV    +I R      T      HAE+ AL +
Sbjct: 13  DEHYMREALRQAR--KAARQDEVPIGAVIVHGSQIIARAWNQVETLKDATAHAEMIALTQ 70

Query: 63  AGEEARGATA---------YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A    +GA           YVT EPC      P CA  I+ C +RRV+     PD++   
Sbjct: 71  A----QGALGDWRLNECDLYVTKEPC------PMCAGAIMHCRVRRVIFGC--PDLKGGA 118

Query: 114 RGLQW 118
            G  W
Sbjct: 119 AGGYW 123


>gi|209527530|ref|ZP_03276032.1| CMP/dCMP deaminase zinc-binding [Arthrospira maxima CS-328]
 gi|209492018|gb|EDZ92371.1| CMP/dCMP deaminase zinc-binding [Arthrospira maxima CS-328]
          Length = 157

 Score = 36.2 bits (82), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 48/117 (41%), Gaps = 16/117 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57
           P  +  + +M  AL+      G     P  A ++ + G +I +G            HAE+
Sbjct: 3   PTYTTHSHWMRQALKLGA-AAGEAGEVPVGAVIVNQQGKLIAQGENRRERDRDPTAHAEI 61

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
            AL +A +          T YVTLEPC      P CA  II+  I  +V   DDP  
Sbjct: 62  IALRQASQVLGDWHLDTCTLYVTLEPC------PMCAGAIIQARIGLLVYGADDPKT 112


>gi|326564207|gb|EGE14443.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis 12P80B1]
          Length = 184

 Score = 36.2 bits (82), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 18/115 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D   M+ AL  ++   G       V  ++V +G ++G G    +T      HAE+ A+  
Sbjct: 28  DVEMMNHALEIAKQ--GAKFGEIPVGAVVVYEGRILGEGYNCPITTQDPTAHAEIVAVRR 85

Query: 63  AGEE------ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           A E        +G   YVTLEPC+       C   +I   I RVV    +P   V
Sbjct: 86  ACETLNNYRLPKGCILYVTLEPCTM------CFGALIHARISRVVFGAFEPKAGV 134


>gi|254411343|ref|ZP_05025120.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196181844|gb|EDX76831.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 143

 Score = 36.2 bits (82), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 14/99 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64
            FM+AA+  ++   GL      +  ++VK+G +IG+G    V       HAE+  L  AG
Sbjct: 3   EFMAAAIAQAKQ--GLREGGIPIGSVLVKEGQIIGQGYNKRVQDNDPVTHAEIDCLRHAG 60

Query: 65  E--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                     Y TL PC        CA  +++ GI++V+
Sbjct: 61  RIGNYNDTILYSTLMPCY------LCAGAVVQFGIKKVI 93


>gi|74317234|ref|YP_314974.1| tRNA-adenosine deaminase [Thiobacillus denitrificans ATCC 25259]
 gi|74056729|gb|AAZ97169.1| probable cytosine/adenosine deaminases [Thiobacillus denitrificans
           ATCC 25259]
          Length = 151

 Score = 36.2 bits (82), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 19/82 (23%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-------GATAYVTLEPC 79
           V  L+V  G ++GRG    ++++    HAEV AL +A   AR       G T YVT+EPC
Sbjct: 19  VGALVVCGGEIVGRGYNRPISSFDPTAHAEVMALRDAA--ARLGNYRLVGCTLYVTMEPC 76

Query: 80  SHYGRSPPCAQFIIECGIRRVV 101
                   CA  I+   I RVV
Sbjct: 77  VM------CAGAILHARIARVV 92


>gi|299753369|ref|XP_001833230.2| diaminohydroxyphosphoribosylamino-pyrimidine deaminase [Coprinopsis
           cinerea okayama7#130]
 gi|298410269|gb|EAU88503.2| diaminohydroxyphosphoribosylamino-pyrimidine deaminase [Coprinopsis
           cinerea okayama7#130]
          Length = 170

 Score = 36.2 bits (82), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 73  YVTLEPCS--HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           Y TLEPCS    G SP CA  +I+  +RR ++ V++P   V   G   L   GI V
Sbjct: 98  YTTLEPCSIRTSGLSP-CADALIKAKVRRCIIGVNEPPDFVKCEGADRLKAAGIEV 152


>gi|162450858|ref|YP_001613225.1| putative zinc-binding hydrolase [Sorangium cellulosum 'So ce 56']
 gi|161161440|emb|CAN92745.1| putative zinc-binding hydrolase [Sorangium cellulosum 'So ce 56']
          Length = 177

 Score = 36.2 bits (82), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 27/59 (45%), Gaps = 11/59 (18%)

Query: 54  HAEVQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           HAEV AL  A          GAT Y TLEPC      P CA  ++   I R+V    DP
Sbjct: 75  HAEVDALRAAARRLGHWRLEGATVYATLEPC------PMCAGALVNARIARLVYGCPDP 127


>gi|111023823|ref|YP_706795.1| hypothetical protein RHA1_ro06865 [Rhodococcus jostii RHA1]
 gi|110823353|gb|ABG98637.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodococcus
           jostii RHA1]
          Length = 262

 Score = 36.2 bits (82), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 82/210 (39%), Gaps = 29/210 (13%)

Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI---GMAGCGSVPITGFISKNQVHLLR 187
           ES        Y       R  + +    S D  +   G++G    P    + +     LR
Sbjct: 23  ESTANALRDLYAYPAETPRPWVRVNFVSSIDGAVSVDGVSGALGTPADRLVFET----LR 78

Query: 188 AQSDAILVGIGTVLADD-------PELTCR--LNGLQEHSPMRII-----LDPHFKLSLD 233
             +D +LVG GTV  ++        E   R   +G+ E  P+ ++     LDP  +L  D
Sbjct: 79  ELADVVLVGAGTVRVENYGGARIHAEGRRRRVASGMPEVPPIAVVSARAHLDPQSRLFTD 138

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLL 291
           +++      AP+++   + DP    A       I+      +    L+  L   G+  +L
Sbjct: 139 TEV------APIVVTCTDADPGRVRALADAGARIVTAGDGQISGDGLIAALEHLGLRRVL 192

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            EGG ++        +VD + L  + +++G
Sbjct: 193 CEGGPSLFGRLTADDVVDEVCLTTAPVLVG 222


>gi|227552392|ref|ZP_03982441.1| nucleoside deaminase [Enterococcus faecium TX1330]
 gi|257888367|ref|ZP_05668020.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,141,733]
 gi|257896743|ref|ZP_05676396.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium Com12]
 gi|293378075|ref|ZP_06624251.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecium PC4.1]
 gi|227178480|gb|EEI59452.1| nucleoside deaminase [Enterococcus faecium TX1330]
 gi|257824421|gb|EEV51353.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,141,733]
 gi|257833308|gb|EEV59729.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium Com12]
 gi|292643330|gb|EFF61464.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecium PC4.1]
          Length = 171

 Score = 36.2 bits (82), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81
           +  ++V +G VIG+G     T      HAE+ A++EA E+        A+ +VTLEPC  
Sbjct: 33  IGAVVVLEGEVIGKGYNLRETTQDATTHAEMLAIKEACEKVGSWRLENASLFVTLEPC-- 90

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
               P C+  +I   +  V     DP    +G
Sbjct: 91  ----PMCSGAMILSRVAEVYFGAYDPKGGTAG 118


>gi|118580679|ref|YP_901929.1| CMP/dCMP deaminase [Pelobacter propionicus DSM 2379]
 gi|118503389|gb|ABK99871.1| tRNA-adenosine deaminase [Pelobacter propionicus DSM 2379]
          Length = 181

 Score = 36.2 bits (82), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
           + C+IV+D  +I RG     ++     HAE+ A+ +A  +         T YVTLEPC+ 
Sbjct: 37  IGCVIVRDNRIIARGHNLRESSQDPSAHAEMIAIRKAARKLSSWRLLDTTLYVTLEPCTM 96

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 C   II   I RVV    DP    +G
Sbjct: 97  ------CMGAIILSRIPRVVFGCLDPKGGAAG 122


>gi|91792629|ref|YP_562280.1| CMP/dCMP deaminase, zinc-binding [Shewanella denitrificans OS217]
 gi|91714631|gb|ABE54557.1| CMP/dCMP deaminase, zinc-binding [Shewanella denitrificans OS217]
          Length = 177

 Score = 36.2 bits (82), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++VKD  ++  G    ++ +    HAE+  +  AG   E  R    T YVTLEPC  
Sbjct: 43  VGAVLVKDNQLLATGFNLSISEHDCSAHAEMACIRAAGTLIENYRLLDTTLYVTLEPC-- 100

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
               P CA  ++   I R+V    D     +G  +  L   G+
Sbjct: 101 ----PMCAGAMVHARIARLVFGATDLKTGAAGSVMNLLQHPGL 139


>gi|307544260|ref|YP_003896739.1| CMP/dCMP deaminase, zinc-binding [Halomonas elongata DSM 2581]
 gi|307216284|emb|CBV41554.1| CMP/dCMP deaminase, zinc-binding [Halomonas elongata DSM 2581]
          Length = 155

 Score = 36.2 bits (82), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 33/128 (25%)

Query: 29  PSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEA-----RGATAYVTLEPC 79
           P  A ++ + G ++G G  A    +    HAE++AL +AG         G T +VTLEPC
Sbjct: 25  PVGAVVVDRAGEIVGSGFNAPVSDHDPSAHAEIRALRDAGTRLGNYRLDGCTLFVTLEPC 84

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
                   C   II   + RVV    +P    SG               M+ES   +F  
Sbjct: 85  LM------CTGAIIHARLARVVYGAAEPR---SG---------------MVESRANLFAQ 120

Query: 140 AYLTRQVE 147
            +   +VE
Sbjct: 121 PWYNHRVE 128


>gi|296332941|ref|ZP_06875399.1| tRNA specific adenosine deaminase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305672716|ref|YP_003864387.1| tRNA specific adenosine deaminase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296149905|gb|EFG90796.1| tRNA specific adenosine deaminase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305410959|gb|ADM36077.1| tRNA specific adenosine deaminase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 161

 Score = 36.2 bits (82), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 16/103 (15%)

Query: 29  PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
           P  A L+V D I I R      T      HAE+  ++EA +        GAT YVTLEPC
Sbjct: 25  PIGAVLVVNDEI-IARAHNLRETEQRSIAHAEMLVIDEACKALGTWRLEGATLYVTLEPC 83

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                 P CA  ++   + +VV    DP    SG  +  L ++
Sbjct: 84  ------PMCAGAVVLSRVEKVVFGAFDPKGGCSGTIMNLLQEE 120


>gi|313902768|ref|ZP_07836165.1| tRNA-adenosine deaminase [Thermaerobacter subterraneus DSM 13965]
 gi|313466888|gb|EFR62405.1| tRNA-adenosine deaminase [Thermaerobacter subterraneus DSM 13965]
          Length = 200

 Score = 36.2 bits (82), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 11/65 (16%)

Query: 54  HAEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+  L EA     G    G T YVTLEPC      P CA  I+   + R+V    DP 
Sbjct: 77  HAEILVLREAAARLGGWRLEGVTLYVTLEPC------PMCAGAIVLARVPRLVYGARDPK 130

Query: 109 VRVSG 113
              +G
Sbjct: 131 AGAAG 135


>gi|311743456|ref|ZP_07717262.1| riboflavin biosynthesis protein RibD domain protein [Aeromicrobium
           marinum DSM 15272]
 gi|311312586|gb|EFQ82497.1| riboflavin biosynthesis protein RibD domain protein [Aeromicrobium
           marinum DSM 15272]
          Length = 250

 Score = 36.2 bits (82), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 35/167 (20%), Positives = 75/167 (44%), Gaps = 13/167 (7%)

Query: 167 AGCGSVPITGFIS----KNQVHLLRAQSDAILVGIGTVLADD-PELTCRLNGLQEH---- 217
           A  G   ++G IS    ++ +  +R  +D +L+G GT+  +    +T R +  Q+     
Sbjct: 48  AAAGPDGLSGSISSPEDRDVLVAVRRHADVVLIGAGTLRGERYSPMTARASDAQQRHEAG 107

Query: 218 ---SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274
              +P   +L     L  D  +   +   PV++  ++ DP   +A  + + +++      
Sbjct: 108 QRSAPTLAVLSGSLDLPWDLPVWAGSTHRPVVLSRDDADPG-RIATARTHADLVLLPDLA 166

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
              ++  LV RG+  ++ EGG ++    + + LVD   +  S + +G
Sbjct: 167 PATIIGALVERGLRRIVCEGGPSLLRELMVAGLVDEADITVSPLFVG 213


>gi|110803707|ref|YP_697380.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens SM101]
 gi|110684208|gb|ABG87578.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens SM101]
          Length = 143

 Score = 35.8 bits (81), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           V  +IVK+G +I R      T      HAE+ A+ EA  +       G   YVTLEPC  
Sbjct: 20  VGAVIVKNGEIIARAHNLKETLKDPTAHAEILAIREACNKLNNWRLHGCEMYVTLEPC-- 77

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
               P CA  I++  + ++ +   D     +G
Sbjct: 78  ----PMCAGAILQSRLSKIYIGTFDDTTGAAG 105


>gi|326560079|gb|EGE10469.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis 46P47B1]
 gi|326561665|gb|EGE12002.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis 103P14B1]
 gi|326565806|gb|EGE15968.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis BC1]
 gi|326570459|gb|EGE20499.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis BC8]
 gi|326573436|gb|EGE23404.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis 101P30B1]
          Length = 181

 Score = 35.8 bits (81), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 18/115 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D   M+ AL  ++   G       V  ++V +G ++G G    +T      HAE+ A+  
Sbjct: 25  DVEMMNRALEIAKQ--GAKFGEIPVGAVVVYEGRILGEGYNCPITTQDPTAHAEIVAVRR 82

Query: 63  AGEE------ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           A E        +G   YVTLEPC+       C   +I   I RVV    +P   V
Sbjct: 83  ACETLNNYRLPKGCILYVTLEPCTM------CFGALIHARISRVVFGAFEPKAGV 131


>gi|168217743|ref|ZP_02643368.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens NCTC 8239]
 gi|182380212|gb|EDT77691.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens NCTC 8239]
          Length = 143

 Score = 35.8 bits (81), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           V  +IVK+G +I R      T      HAE+ A+ EA  +       G   YVTLEPC  
Sbjct: 20  VGAVIVKNGEIIARAHNLKETLKDPTAHAEILAIREACNKLNNWRLNGCEMYVTLEPC-- 77

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
               P CA  I++  + ++ +   D     +G
Sbjct: 78  ----PMCAGAILQSRLSKIYIGTFDDTTGAAG 105


>gi|160871633|ref|ZP_02061765.1| tRNA-specific adenosine deaminase [Rickettsiella grylli]
 gi|159120432|gb|EDP45770.1| tRNA-specific adenosine deaminase [Rickettsiella grylli]
          Length = 160

 Score = 35.8 bits (81), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 15/114 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIV---IGRGVTAYGGCPHAEV 57
           + VS  D  +M  AL  +  H   +   P  A L+  D ++     + +T      HAE+
Sbjct: 6   IAVSQRDTAYMQLALNQAA-HAKRSHEVPIGAILVWNDHVIATAYNQTLTRCDPTAHAEI 64

Query: 58  QALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
             L+E  ++ +      AT YVTLEPC        C   +I+  I+R+V    D
Sbjct: 65  VVLQETAKQLKNHRLLDATLYVTLEPC------LMCVGAMIQARIKRLVFGAYD 112


>gi|320451012|ref|YP_004203108.1| tRNA(Ile)-lysidine synthase [Thermus scotoductus SA-01]
 gi|320151181|gb|ADW22559.1| tRNA(Ile)-lysidine synthase [Thermus scotoductus SA-01]
          Length = 514

 Score = 35.8 bits (81), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 45/104 (43%), Gaps = 10/104 (9%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--HAEVQALEE 62
           S + R+M+ AL  +R         P  A L+V + +            P  HAE+  L E
Sbjct: 377 SEEERYMALALEEAR-QAFQEGEVPVGAVLVVGERVYRAHNQVEATRDPTAHAEMLLLRE 435

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
            G  ARG   YVTLEPC        C   + E G+  VV  V++
Sbjct: 436 VGRGARGGRLYVTLEPCRM------CHHALREAGV-EVVYGVEN 472


>gi|42527696|ref|NP_972794.1| deoxycytidylate deaminase, putative [Treponema denticola ATCC
           35405]
 gi|41818524|gb|AAS12713.1| deoxycytidylate deaminase, putative [Treponema denticola ATCC
           35405]
          Length = 165

 Score = 35.8 bits (81), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 12/82 (14%)

Query: 54  HAEVQALEEAGEEA---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           HAE  A+ +A +      GAT Y  + PC        CA  II CGI RVV    +    
Sbjct: 86  HAEQNAICQAAKRGISIDGATLYCKMTPCR------TCAMLIINCGIVRVVA---EKRYH 136

Query: 111 VSGRGLQWLSQKGIIVDRMMES 132
            S   ++   + GII++ + +S
Sbjct: 137 DSADTIEMFKKAGIILEHISDS 158


>gi|291003336|ref|ZP_06561309.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 250

 Score = 35.8 bits (81), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 80/193 (41%), Gaps = 15/193 (7%)

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           Y   +  +R  + +    S D  + + G  S  ++    +  + L+R  SD +LVG+ T 
Sbjct: 21  YAYPEALERPWVRVNFVSSLDGAVTIKG-RSRGLSAPEDQRVLGLIRDLSDVVLVGVSTA 79

Query: 201 LADD----------PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
           + +            E   RL GL    P+ ++      L +DS ++   L+ P+++  +
Sbjct: 80  VLEGYRGVKRTEVRSERRSRL-GLSPVPPIALVTR-SCSLPVDSPLLTDTLVPPIVLTCQ 137

Query: 251 NDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
                   A      +++    +  DL   L  L  RG+  +  EGG  +  S + S LV
Sbjct: 138 AAPADRRAALADAGADVVVAGDEQVDLPAALAALDERGLRRIGCEGGPTLFGSLVESDLV 197

Query: 309 DSIILYRSQIVIG 321
           D + L  S ++ G
Sbjct: 198 DELCLTMSPLLAG 210


>gi|328948242|ref|YP_004365579.1| CMP/dCMP deaminase zinc-binding protein [Treponema succinifaciens
           DSM 2489]
 gi|328448566|gb|AEB14282.1| CMP/dCMP deaminase zinc-binding protein [Treponema succinifaciens
           DSM 2489]
          Length = 165

 Score = 35.8 bits (81), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 12/82 (14%)

Query: 54  HAEVQALEEAGEEA---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           HAE  A+ +A +      GAT Y  + PC        CA  II CGI+RVV    +    
Sbjct: 86  HAEQNAICQAAKRGISIDGATVYCKMTPCR------TCAMLIINCGIKRVVC---EKHYH 136

Query: 111 VSGRGLQWLSQKGIIVDRMMES 132
                ++  ++ GI ++ + +S
Sbjct: 137 DEEDSMKMFAEAGIKIEHLEDS 158


>gi|168206176|ref|ZP_02632181.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens E str. JGS1987]
 gi|170662306|gb|EDT14989.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens E str. JGS1987]
          Length = 143

 Score = 35.8 bits (81), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81
           V  +IVK+G +I R      T      HAE+ A+ EA  +       G   YVTLEPC  
Sbjct: 20  VGAVIVKNGEIIARAHNLKETLKDPTAHAEILAIREACNKLNNWRLHGCEMYVTLEPC-- 77

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
               P CA  I++  + ++ +   D     +G
Sbjct: 78  ----PMCAGAILQSRLSKIYIGTFDDTTGAAG 105


>gi|170725917|ref|YP_001759943.1| zinc-binding CMP/dCMP deaminase [Shewanella woodyi ATCC 51908]
 gi|169811264|gb|ACA85848.1| CMP/dCMP deaminase zinc-binding [Shewanella woodyi ATCC 51908]
          Length = 169

 Score = 35.8 bits (81), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 15/92 (16%)

Query: 31  VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81
           V  ++VK+  VI  G    + ++    HAE+Q L +AG   E  R    T YVTLEPC+ 
Sbjct: 29  VGAILVKNDEVISAGFNFCIGSHDPSAHAEMQCLRQAGKVIENYRLLDTTLYVTLEPCA- 87

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                 CA  ++   + R+V    D     +G
Sbjct: 88  -----MCAGAMVHSRVSRLVFGASDAKTGAAG 114


Searching..................................................done


Results from round 2




>gi|254780348|ref|YP_003064761.1| 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidine
           [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040025|gb|ACT56821.1| 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidine
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 364

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 364/364 (100%), Positives = 364/364 (100%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL
Sbjct: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS
Sbjct: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK
Sbjct: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
           NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA
Sbjct: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
           LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH
Sbjct: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
           SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC
Sbjct: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360

Query: 361 LQEL 364
           LQEL
Sbjct: 361 LQEL 364


>gi|315122228|ref|YP_004062717.1| 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidine
           [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495630|gb|ADR52229.1| 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidine
           [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 367

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 268/363 (73%), Positives = 313/363 (86%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M +SS D RFMS ALRFS W  GLT TNPSVACLIVKDGI++GRGVTAYGG PHAE QAL
Sbjct: 1   MSLSSLDERFMSVALRFSCWGTGLTGTNPSVACLIVKDGIIVGRGVTAYGGRPHAETQAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           EEAGE ARGATAYVTLEPCSHYG++PPCA+FI+E GI RVVVCV DPDVRVSGRGLQWLS
Sbjct: 61  EEAGERARGATAYVTLEPCSHYGQAPPCAKFIVEAGISRVVVCVIDPDVRVSGRGLQWLS 120

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           QKGI+VD+++E EG+  L AYLTRQV+ RSH+ LK+A+SQDNMIG+ GCG+V ITG IS+
Sbjct: 121 QKGIVVDKVLEREGERVLGAYLTRQVKNRSHVILKLALSQDNMIGIVGCGNVSITGLISR 180

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            QVHLLRAQSDAILVGIGTV++D+PELTCRL+GL++ SP+RIILDPH K+SL S+I++TA
Sbjct: 181 KQVHLLRAQSDAILVGIGTVISDNPELTCRLDGLKDRSPIRIILDPHLKISLSSRIMQTA 240

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
            LAPVIIVTE +D  LAL+ +KKN++I++C+CRDLKKLL IL  RG+TSLLVEGGA VA 
Sbjct: 241 SLAPVIIVTEKNDCNLALSIKKKNVDIVHCNCRDLKKLLAILADRGITSLLVEGGARVAR 300

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
           SF+ S  VDSIILY+SQ +IG  GI SPLEE ++E NFMCVRRD FGSDVC EY+ KN C
Sbjct: 301 SFMMSGFVDSIILYKSQKIIGTSGIASPLEEEFIENNFMCVRRDGFGSDVCFEYVRKNFC 360

Query: 361 LQE 363
           LQE
Sbjct: 361 LQE 363


>gi|332982092|ref|YP_004463533.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Mahella australiensis 50-1 BON]
 gi|332699770|gb|AEE96711.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Mahella australiensis 50-1 BON]
          Length = 363

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 134/359 (37%), Positives = 192/359 (53%), Gaps = 9/359 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             FM  AL  +R   G T+ NP V  +IVK G +IG G     G PHAE+ AL EAGE A
Sbjct: 4   EIFMQRALELARMGWGTTNPNPMVGAVIVKGGRIIGEGYHKKAGEPHAEINALREAGEGA 63

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           RG+T YVTLEPCSH+GR+PPCA  +++ G++ VV+ ++DP+ RV+GRG+  L Q GI ++
Sbjct: 64  RGSTVYVTLEPCSHFGRTPPCADALVKAGVKEVVIAMEDPNPRVAGRGINALRQAGIKVI 123

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +ME E +     ++         +  K A++ D  I  A   S  IT  +S+  VH  
Sbjct: 124 TGIMEQEARRLNEVFIKYITSDMPFVIWKCAMTLDGKIATANGDSKWITNELSRQYVHWW 183

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           R +  A+L GIGTVLADDP LT RL  +  E  P+RII D   K  LDS ++       +
Sbjct: 184 RYRVSAVLTGIGTVLADDPMLTVRLPHINIEKQPVRIIADSLAKTPLDSNVLNIEQAPTI 243

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           +  + + DP     F+ K  ++I  D +   DL +L+  L  R + S+L+EGG  +A S 
Sbjct: 244 MATSWSADPSKIETFKSKGADVIITDGKDKVDLVQLMRELHKREIDSVLIEGGPTLAASA 303

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCLEYIGK 357
           I   LVD  +++ +  +IG  G+ +    G            V    F  DV +E   K
Sbjct: 304 IEEGLVDKAMVFIAPKLIGGKGLSALSGNGIARMADAWQLSGVSVKRFEDDVLIEGYLK 362


>gi|126207866|ref|YP_001053091.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
           L20]
 gi|1173516|gb|AAA86522.1| riboflavin-specific deaminase [Actinobacillus pleuropneumoniae]
 gi|126096658|gb|ABN73486.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 410

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 116/362 (32%), Positives = 193/362 (53%), Gaps = 12/362 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           +  D  +M  A+  ++  +G T+ NP V C+IVK+G ++  G     G  HAE  A+   
Sbjct: 46  TMTDLDYMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLHC 105

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            E+  GATAYVTLEPC H+GR+PPC+  +IE GI++V +   DP+  V+GRG   L Q G
Sbjct: 106 KEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGANQLRQAG 165

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + +V+ +++ E       +      KR ++ +K A++ D  I      S  ITG  ++ +
Sbjct: 166 VEVVEGLLKEECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATGSGESKWITGESARAR 225

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           V   R Q  AI+VG+ TVLAD+P L  R+       P+RI+ D   +  LD ++++TA  
Sbjct: 226 VQQTRHQYSAIMVGVDTVLADNPMLNSRMP--NAKQPVRIVCDSQLRTPLDCQLVQTAKE 283

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298
              +I T +DD      FR   ++++ C  R    DL+ LL  L    + SLL+EGG+++
Sbjct: 284 YRTVIATVSDDLQKIEQFRPLGVDVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSSL 343

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLE 353
             S + S +V+ +  Y +  ++G     +P+    +++    V+      +  G D+ L+
Sbjct: 344 NFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILLD 403

Query: 354 YI 355
           Y+
Sbjct: 404 YV 405


>gi|331270609|ref|YP_004397101.1| riboflavin biosynthesis protein RibD [Clostridium botulinum
           BKT015925]
 gi|329127159|gb|AEB77104.1| riboflavin biosynthesis protein RibD [Clostridium botulinum
           BKT015925]
          Length = 372

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 133/372 (35%), Positives = 196/372 (52%), Gaps = 14/372 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D R+M  A+  S+  +G T  NP V  +IVKD  +IG G   Y G  HAE+ AL+   E
Sbjct: 1   MDLRYMKRAINLSKLGIGHTYPNPLVGAVIVKDNKIIGEGYHQYFGENHAEINALKNVKE 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +  GAT YVTLEPCSHYG++PPCA  I++ GI++V++ + DP+  V+GRG++ L   GI 
Sbjct: 61  DVNGATMYVTLEPCSHYGKTPPCANAIVKSGIKKVIIGMRDPNSLVAGRGIRILKNNGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           ++  ++E E K     ++     K     LK A++ D  I      S  I+  IS+  VH
Sbjct: 121 VIQGVLEEEIKKVNEIFIKYITTKLPFCILKTAMTLDGKIATRDGDSKWISNEISRQYVH 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            +R +   I+VGIGT+L D+P LT RLN  +     RII+D   ++ ++SK++     A 
Sbjct: 181 EIRHKVAGIMVGIGTILKDNPSLTTRLNNKKGRDSTRIIIDSKGRIPVESKVLNLESEAN 240

Query: 245 VIIVTEN-DDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
            IIVT            R K   +I      D  DLK L+  L  R + S+L+EGGA + 
Sbjct: 241 TIIVTTELASREKIEVIRSKGAEVIITPLCDDRVDLKYLMRELGERNIDSVLLEGGAELN 300

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE- 353
           +S +N  +VD +I + S  +IG     +P+            N   ++   F  D+ +E 
Sbjct: 301 YSALNEGIVDKVISFISPKIIGGKEAKTPVGGVGKSAISECVNLENIKVSQFEEDIVIEG 360

Query: 354 YIG--KNLCLQE 363
           YI   K LC QE
Sbjct: 361 YIKGEKKLCSQE 372


>gi|150388845|ref|YP_001318894.1| riboflavin biosynthesis protein RibD [Alkaliphilus metalliredigens
           QYMF]
 gi|149948707|gb|ABR47235.1| riboflavin biosynthesis protein RibD [Alkaliphilus metalliredigens
           QYMF]
          Length = 366

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 128/361 (35%), Positives = 200/361 (55%), Gaps = 12/361 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           ++M  A+  ++   G T+ NP V  +IVK+  VIG G   Y G PHAEV A   A E+ +
Sbjct: 4   QYMRKAIELAKKGTGHTNPNPLVGAVIVKNNKVIGEGYHHYYGGPHAEVDAFNNATEDVK 63

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GAT YVTLEPCSHYG++PPCA+ I+E GI +VV+ + DP+  V+G G+  L + GI ++ 
Sbjct: 64  GATMYVTLEPCSHYGKTPPCAKAIVEKGIAQVVIAMRDPNPLVAGNGIGILRESGIEVIS 123

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++ESE K     ++     +     LK A++ D  I  A   S  IT   S+  VH +R
Sbjct: 124 EVLESEAKNLNEIFVKYITTEMPFCILKTAMTLDGKIATATGDSKWITNEESRQYVHEIR 183

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            Q  +I+VGIGTVL DDP+LT RL+  +   P+R+I+D   K  L +++++ +     II
Sbjct: 184 HQVSSIMVGIGTVLVDDPQLTTRLHNQEGSDPIRVIVDTEAKTPLWAQVLQLSSKVRTII 243

Query: 248 V-TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             TE  DP    A  +K   +I    +    DLK L+  L  +G+ S+L+EGGA +  S 
Sbjct: 244 ATTEKADPNKIKALEEKGAEVIIIPLKNNQVDLKCLIQQLGAKGIDSVLIEGGATLNDSA 303

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE-YIG 356
           +   +VD ++ + +  ++G     +P+    ++          ++   FG D+ +E Y+G
Sbjct: 304 LQEGIVDKVVSFIAPKIVGGAKAKTPVGGDGIKYMKDAIQLTDIQVRKFGQDIMIEGYLG 363

Query: 357 K 357
           K
Sbjct: 364 K 364


>gi|8039802|sp|P50853|RIBD_ACTPL RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
           RecName:
           Full=Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase; Includes: RecName:
           Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
          Length = 376

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 116/362 (32%), Positives = 193/362 (53%), Gaps = 12/362 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           +  D  +M  A+  ++  +G T+ NP V C+IVK+G ++  G     G  HAE  A+   
Sbjct: 12  TMTDLDYMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLHC 71

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            E+  GATAYVTLEPC H+GR+PPC+  +IE GI++V +   DP+  V+GRG   L Q G
Sbjct: 72  KEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGANQLRQAG 131

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + +V+ +++ E       +      KR ++ +K A++ D  I      S  ITG  ++ +
Sbjct: 132 VEVVEGLLKEECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATGSGESKWITGESARAR 191

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           V   R Q  AI+VG+ TVLAD+P L  R+       P+RI+ D   +  LD ++++TA  
Sbjct: 192 VQQTRHQYSAIMVGVDTVLADNPMLNSRMP--NAKQPVRIVCDSQLRTPLDCQLVQTAKE 249

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298
              +I T +DD      FR   ++++ C  R    DL+ LL  L    + SLL+EGG+++
Sbjct: 250 YRTVIATVSDDLQKIEQFRPLGVDVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSSL 309

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLE 353
             S + S +V+ +  Y +  ++G     +P+    +++    V+      +  G D+ L+
Sbjct: 310 NFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILLD 369

Query: 354 YI 355
           Y+
Sbjct: 370 YV 371


>gi|261493709|ref|ZP_05990228.1| riboflavin biosynthesis protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261494376|ref|ZP_05990870.1| riboflavin biosynthesis protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310025|gb|EEY11234.1| riboflavin biosynthesis protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310709|gb|EEY11893.1| riboflavin biosynthesis protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 403

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 121/364 (33%), Positives = 185/364 (50%), Gaps = 12/364 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           + +   D ++M+ A+  +    G TS NP V C+IVK+G +I  G     G  HAE  A+
Sbjct: 35  IKMHMTDVQYMAYAITLAEKARGWTSPNPLVGCVIVKNGNIIAEGYHQKAGSWHAERNAI 94

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
               E+  GATAYVTLEPC H+GR+PPC++ +IE GI++V +   DP+  VSG+G   L 
Sbjct: 95  LNCEEDLTGATAYVTLEPCCHHGRTPPCSELLIERGIKKVFIGSRDPNPLVSGKGAAQLR 154

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI +V+  M +E       +      KR ++ LK  ++ D  I      S  ITG  +
Sbjct: 155 AAGIEVVEDFMRTECDALNPIFFHYIQTKRPYVLLKYGMTADGKIATYTGNSKWITGEAA 214

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  V   R +  AI+VG+ TVLADDP L  R+       P+RI+ D   +  LDS++++T
Sbjct: 215 RANVQKSRHEYSAIMVGVETVLADDPMLNSRME--NAKQPVRIVCDSQLRTPLDSQLVQT 272

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295
           A     II T N+D      +    + I+    R    DL  LL  L   G+ SLL+EGG
Sbjct: 273 ARQYRTIIATLNNDAKKQAEYTACGVEILVTGERDKRVDLADLLQKLGELGIDSLLIEGG 332

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDV 350
           + +  S +   LV+ +  Y +  +IG     +P+    + +    V+      +  G D+
Sbjct: 333 SQLNFSVLEQGLVNRVHCYIAPKLIGGKAAKTPIGGKGIGELAQAVKLRLKSTELLGEDI 392

Query: 351 CLEY 354
            L+Y
Sbjct: 393 LLDY 396


>gi|313114897|ref|ZP_07800395.1| riboflavin biosynthesis protein RibD [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622774|gb|EFQ06231.1| riboflavin biosynthesis protein RibD [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 374

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 123/367 (33%), Positives = 190/367 (51%), Gaps = 12/367 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++VK+G +IG+G     G  HAE  AL    E+
Sbjct: 3   DKEYMRLALQLAKKGCGWTSPNPMVGAVVVKEGRIIGQGWHQRYGQAHAERNALASCTED 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            +GAT YVTLEPC HYG+ PPC   I++ GI RVVV   DP+  V+G+G+  L   GI +
Sbjct: 63  PQGATLYVTLEPCCHYGKQPPCVDAILDAGIHRVVVGSADPNPLVAGKGIAILRAHGIDV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
            + +++ E       +      KR ++++K A++ D  I      S  ITG I++N V  
Sbjct: 123 TENVLQEECDALNKVFFHYITTKRPYVSMKYAMTMDGKIATYTGASKWITGEIARNHVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R +   I+VG+GT+LADDP LTCR+ G     P+RII D H +  L S+++ TA   P 
Sbjct: 183 QRHRFRGIMVGVGTILADDPLLTCRIEG--GRDPVRIICDTHLRTPLQSQVVMTAKQVPT 240

Query: 246 IIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           I+ T   DP    A+++    ++    +C   +L +L+  L    + S+L+EGG  +  S
Sbjct: 241 ILATCCGDPEKQAAYQQAGCRVLCLEAHCGHVNLLQLMEQLGQEQIDSILLEGGGTLNWS 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356
            + S +V  +  Y +  + G     +P+E   +            R +  G D  +E   
Sbjct: 301 ALESGIVQQVQAYIAPKLFGGRDAKAPIEGAGVPLPDAAFRLKNSRLEQLGKDFLIESEV 360

Query: 357 KNLCLQE 363
           +  CL E
Sbjct: 361 EYPCLPE 367


>gi|303252625|ref|ZP_07338788.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302648593|gb|EFL78786.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
          Length = 379

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 116/362 (32%), Positives = 193/362 (53%), Gaps = 12/362 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           +  D  +M  A+  ++  +G T+ NP V C+IVK+G ++  G     G  HAE  A+   
Sbjct: 15  TMTDLDYMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLHC 74

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            E+  GATAYVTLEPC H+GR+PPC+  +IE GI++V +   DP+  V+GRG   L Q G
Sbjct: 75  KEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGANQLRQAG 134

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + +V+ +++ E       +      KR ++ +K A++ D  I      S  ITG  ++ +
Sbjct: 135 VEVVEGLLKEECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATGSGESKWITGESARAR 194

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           V   R Q  AI+VG+ TVLAD+P L  R+       P+RI+ D   +  LD ++++TA  
Sbjct: 195 VQQTRHQYSAIMVGVDTVLADNPMLNSRMP--NAKQPVRIVCDSQLRTPLDCQLVQTAKE 252

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298
              +I T +DD      FR   ++++ C  R    DL+ LL  L    + SLL+EGG+++
Sbjct: 253 YRTVIATVSDDLQKIEQFRPLGVDVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSSL 312

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLE 353
             S + S +V+ +  Y +  ++G     +P+    +++    V+      +  G D+ L+
Sbjct: 313 NFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILLD 372

Query: 354 YI 355
           Y+
Sbjct: 373 YV 374


>gi|160944654|ref|ZP_02091881.1| hypothetical protein FAEPRAM212_02168 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443838|gb|EDP20842.1| hypothetical protein FAEPRAM212_02168 [Faecalibacterium prausnitzii
           M21/2]
          Length = 374

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 123/367 (33%), Positives = 189/367 (51%), Gaps = 12/367 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++VK+G +IG+G     G  HAE  AL    E+
Sbjct: 3   DKEYMRLALQLAKKGCGWTSPNPMVGAVVVKEGRIIGQGWHQRYGQAHAERNALASCTED 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            +GAT YVTLEPC HYG+ PPC   I++ GI RVVV   DP+  V+G+G+  L   GI +
Sbjct: 63  PQGATLYVTLEPCCHYGKQPPCVDAILDAGIHRVVVGSADPNPLVAGKGIAILRAHGIDV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
            + +++ E       +      KR  +++K A++ D  I      S  ITG I++N V  
Sbjct: 123 TENVLQEECDALNKVFFHYITTKRPFVSMKYAMTMDGKIATYTGASKWITGEIARNHVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R +   I+VG+GT+LADDP LTCR+ G     P+RII D H +  L S+++ TA   P 
Sbjct: 183 QRHRFRGIMVGVGTILADDPLLTCRIEG--GRDPVRIICDTHLRTPLQSQVVMTAKQVPT 240

Query: 246 IIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           I+ T   DP    A+++    ++    +C   +L +L+  L    + S+L+EGG  +  S
Sbjct: 241 ILATCCGDPEKQAAYQQAGCRVLCLEAHCGHVNLLQLMEQLGQEQIDSILLEGGGTLNWS 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356
            + S +V  +  Y +  + G     +P+E   +            R +  G D  +E   
Sbjct: 301 ALESGIVQQVQAYIAPKLFGGRDAKAPIEGAGVPLPDAAFRLKNSRLEQLGKDFLIESEV 360

Query: 357 KNLCLQE 363
           +  CL E
Sbjct: 361 EYPCLPE 367


>gi|190149675|ref|YP_001968200.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|189914806|gb|ACE61058.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
          Length = 379

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 116/362 (32%), Positives = 191/362 (52%), Gaps = 12/362 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           +  D  +M  A+  ++  +G T+ NP V C+IVK+G ++  G     G  HAE  A+   
Sbjct: 15  TMTDLDYMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLHC 74

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            E+  GATAYVTLEPC H+GR+PPC+  +IE GI++V +   DP+  V+GRG   L Q G
Sbjct: 75  KEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGANQLRQAG 134

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + +V+ +++ E       +      KR ++ +K A++ D  I      S  ITG  ++ +
Sbjct: 135 VEVVEGLLKEECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATGSGESKWITGESARAR 194

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           V   R Q  AI+VG+ TVLAD+P L  R+       P+RI+ D   +  LD ++++TA  
Sbjct: 195 VQQTRHQYSAIMVGVDTVLADNPMLNSRMP--NAKQPVRIVCDSQLRTPLDCQLVQTAKE 252

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298
              +I T  DD      FR   + ++ C  R    DL+ LL  L    + SLL+EGG+++
Sbjct: 253 YRTVIATVCDDLQKVEQFRPLGVEVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSSL 312

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLE 353
             S + S +V+ +  Y +  ++G     +P+    +++    V+      +  G D+ L+
Sbjct: 313 NFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILLD 372

Query: 354 YI 355
           Y+
Sbjct: 373 YV 374


>gi|323976105|gb|EGB71198.1| riboflavin biosynthesis protein RibD [Escherichia coli TW10509]
          Length = 367

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 187/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVTRVVAAMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TV+ADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVMADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++ +           +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQSGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|157159935|ref|YP_001457253.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli HS]
 gi|157065615|gb|ABV04870.1| riboflavin biosynthesis protein RibD [Escherichia coli HS]
          Length = 367

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
             RAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSSEWPETVRTLLTPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|238921881|ref|YP_002935395.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Eubacterium
           eligens ATCC 27750]
 gi|238873553|gb|ACR73261.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Eubacterium
           eligens ATCC 27750]
          Length = 373

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 114/363 (31%), Positives = 180/363 (49%), Gaps = 11/363 (3%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             S  D  +M  A+  ++   G  + NP V  +IVKD  +IG G     G  HAE  AL 
Sbjct: 8   NFSKQDEFYMRRAIELAKNGTGWVNPNPLVGAVIVKDDRIIGEGWHRKYGELHAERDALS 67

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
              E+  GAT YVTLEPC H+G+ PPC + +++ GI RVV+   DP+  VSG+G+++L +
Sbjct: 68  RCMEDTSGATIYVTLEPCCHHGKQPPCTEALVQAGISRVVIGSMDPNPLVSGKGVKYLEE 127

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +   +   E     + +      K  ++ +K A + D  I      S  ITG  ++
Sbjct: 128 HGIKVEGCVCNEECLAMNYVFFHYIRNKEPYVVMKTAQTLDGKIATYKGLSKWITGEQAR 187

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-QEHSPMRIILDPHFKLSLDSKIIKT 239
             VH  R +  AI+VG+GTV+AD+P L CR   +   H+P+RII D   +  LDS+I+K+
Sbjct: 188 ENVHADRHRYAAIMVGVGTVIADNPMLDCRSTAISNPHNPVRIICDSRLRTPLDSRIVKS 247

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGG 295
           A   P II T + D      +      +I         DLK+L+ IL  +G+ S+++EGG
Sbjct: 248 AGQIPTIIATCSTDSDRKSLYENAGCEVIITKESEQHVDLKELMNILGEKGIDSVILEGG 307

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDV 350
             +  S + + +V+ +  Y +  + G     + +E   +                 G D+
Sbjct: 308 GTLNFSALQAGIVNRVQTYIAPKIFGGVDSKTAVEGQGIANVDEAYRLRNKTVRLLGDDI 367

Query: 351 CLE 353
            +E
Sbjct: 368 LIE 370


>gi|284920223|emb|CBG33282.1| riboflavin biosynthesis protein [Escherichia coli 042]
          Length = 367

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 128/367 (34%), Positives = 186/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|307249603|ref|ZP_07531590.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306858458|gb|EFM90527.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 364

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 115/363 (31%), Positives = 191/363 (52%), Gaps = 14/363 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++  D  +M  A+  ++  +G T+ NP V C+IVK+G ++  G     G  HAE  A+  
Sbjct: 1   MTDLD--YMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLH 58

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
             E+  GATAYVTLEPC H+GR+PPC+  +IE GI++V +   DP+  V+GRG   L Q 
Sbjct: 59  CKEDLSGATAYVTLEPCCHHGRTPPCSNLLIERGIKKVFIGSSDPNPLVAGRGANQLRQA 118

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +V+ +++ E       +      K  ++ +K A++ D  I      S  ITG  ++ 
Sbjct: 119 GVEVVEGLLKEECDALNPIFFHYIQTKCPYVLMKYAMTADGKIATGSGESKWITGESARA 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +V   R Q  AI+VG+ TVLAD+P L  R+       P+RI+ D   +  LD ++++TA 
Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMP--NAKQPVRIVCDSQLRTPLDCQLVQTAK 236

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
               +I T  DD      FR   + ++ C  R    DL+ LL  L    + SLL+EGG++
Sbjct: 237 EYRTVIATVCDDLQKVEQFRPLGVEVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352
           +  S + S +V+ +  Y +  ++G     +P+    +++    V+      +  G D+ L
Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356

Query: 353 EYI 355
           +Y+
Sbjct: 357 DYV 359


>gi|295104352|emb|CBL01896.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Faecalibacterium prausnitzii SL3/3]
          Length = 374

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 123/367 (33%), Positives = 188/367 (51%), Gaps = 12/367 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++VK+G +IG+G     G  HAE  AL    E+
Sbjct: 3   DKEYMRLALQLAKKGCGWTSPNPMVGAVVVKEGRIIGQGWHQRYGQAHAERNALASCTED 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            +GAT YVTLEPC HYG+ PPC   I++ GI RVVV   DP+  V+G+G+  L   GI +
Sbjct: 63  PQGATLYVTLEPCCHYGKQPPCVDAILDAGIHRVVVGSADPNPLVAGKGIAILRAHGIDV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
            + +++ E       +      KR  +++K A++ D  I      S  ITG I +N V  
Sbjct: 123 TENVLQEECDALNKVFFHYITTKRPFVSMKYAMTMDGKIATYTGASKWITGEIVRNHVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R +   I+VG+GT+LADDP LTCR+ G     P+RII D H +  L S+++ TA   P 
Sbjct: 183 QRHRFRGIMVGVGTILADDPLLTCRIEG--GRDPVRIICDTHLRTPLQSQVVMTAKQVPT 240

Query: 246 IIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           I+ T   DP    A+++    ++    +C   +L +L+  L    + S+L+EGG  +  S
Sbjct: 241 ILATCCGDPEKQAAYQQAGCRVLCLEAHCGHVNLLQLMEQLGQEQIDSILLEGGGTLNWS 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356
            + S +V  +  Y +  + G     +P+E   +            R +  G D  +E   
Sbjct: 301 ALESGIVQQVQAYIAPKLFGGRDAKAPIEGAGVPLPDAAFRLKNSRLEQLGKDFLIESEV 360

Query: 357 KNLCLQE 363
           +  CL E
Sbjct: 361 EYPCLPE 367


>gi|332341777|gb|AEE55111.1| riboflavin biosynthesis protein RibD [Escherichia coli UMNK88]
          Length = 367

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 128/367 (34%), Positives = 186/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRSLLIPEHNGHLDLVLLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|317131626|ref|YP_004090940.1| riboflavin biosynthesis protein RibD [Ethanoligenens harbinense
           YUAN-3]
 gi|315469605|gb|ADU26209.1| riboflavin biosynthesis protein RibD [Ethanoligenens harbinense
           YUAN-3]
          Length = 367

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 124/367 (33%), Positives = 188/367 (51%), Gaps = 13/367 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL ++    G  + NP V  ++VKDG VIG G     G  HAE  AL    E 
Sbjct: 3   DETYMKLALEYAEKGCGWVNPNPMVGAVVVKDGRVIGTGWHRRYGELHAERNALASCTEP 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            +GAT YVTLEPC HYG++PPC   I+E GI RVVV   DP+  V+G+G++ L Q+GI +
Sbjct: 63  PQGATLYVTLEPCCHYGKTPPCTDAILESGIHRVVVGSVDPNPLVAGKGIRILRQRGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
            + ++          +      +  ++ +K A++ D  I      S  ITG  ++ +   
Sbjct: 123 AEGVLGDACTGINEVFFHFIRTRMPYVVMKYAMTMDGKIATCSGQSKWITGETARRRTQE 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R +   I+VGIGTVL DDP LTCRL      +P+RI+ D   +  L+++I++    AP 
Sbjct: 183 DRHRYSGIMVGIGTVLTDDPLLTCRLP--DGRNPVRIVCDSRLRTPLNAQIVRITGEAPT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           I+VT + D  LA  +R     ++    +    DL+ L+T L  +G+ S+L+EGG A+  S
Sbjct: 241 ILVTCSRDEALAYPYRDAGCEVLTLPAKDGHVDLRALMTALGKKGIDSVLLEGGGALNWS 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLEYIG 356
            + S +V+ +  Y +  + G     SP+    +E      R         G D+ LE   
Sbjct: 301 ALQSGIVNKVQAYVAPKLFGGINAKSPVAGMGVESPEQAFRLASPQVTRLGEDILLESEV 360

Query: 357 KNLCLQE 363
            + C QE
Sbjct: 361 LS-CSQE 366


>gi|193068693|ref|ZP_03049654.1| riboflavin biosynthesis protein RibD [Escherichia coli E110019]
 gi|209917627|ref|YP_002291711.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli SE11]
 gi|218552977|ref|YP_002385890.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli IAI1]
 gi|260853634|ref|YP_003227525.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli O26:H11 str. 11368]
 gi|260866572|ref|YP_003232974.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli O111:H- str. 11128]
 gi|293418481|ref|ZP_06660916.1| riboflavin biosynthesis protein RibD [Escherichia coli B088]
 gi|300820347|ref|ZP_07100499.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 119-7]
 gi|300903321|ref|ZP_07121249.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 84-1]
 gi|301301562|ref|ZP_07207697.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 124-1]
 gi|331666763|ref|ZP_08367637.1| riboflavin biosynthesis protein RibD [Escherichia coli TA271]
 gi|192958056|gb|EDV88498.1| riboflavin biosynthesis protein RibD [Escherichia coli E110019]
 gi|209910886|dbj|BAG75960.1| pyrimidine deaminase/reductase [Escherichia coli SE11]
 gi|218359745|emb|CAQ97286.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli IAI1]
 gi|257752283|dbj|BAI23785.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli O26:H11 str. 11368]
 gi|257762928|dbj|BAI34423.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli O111:H- str. 11128]
 gi|291325009|gb|EFE64424.1| riboflavin biosynthesis protein RibD [Escherichia coli B088]
 gi|300404616|gb|EFJ88154.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 84-1]
 gi|300527132|gb|EFK48201.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 119-7]
 gi|300843059|gb|EFK70819.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 124-1]
 gi|315256239|gb|EFU36207.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 85-1]
 gi|323152118|gb|EFZ38411.1| riboflavin biosynthesis protein RibD [Escherichia coli EPECa14]
 gi|323184760|gb|EFZ70131.1| riboflavin biosynthesis protein RibD [Escherichia coli 1357]
 gi|323945315|gb|EGB41371.1| riboflavin biosynthesis protein RibD [Escherichia coli H120]
 gi|324016680|gb|EGB85899.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 117-3]
 gi|331065987|gb|EGI37871.1| riboflavin biosynthesis protein RibD [Escherichia coli TA271]
          Length = 367

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
             RAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|187734040|ref|YP_001879123.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Shigella boydii CDC 3083-94]
 gi|187431032|gb|ACD10306.1| riboflavin biosynthesis protein RibD [Shigella boydii CDC 3083-94]
          Length = 367

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 128/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
             I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HHIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|46143613|ref|ZP_00134868.2| COG1985: Pyrimidine reductase, riboflavin biosynthesis
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307247384|ref|ZP_07529431.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307260857|ref|ZP_07542543.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306856081|gb|EFM88237.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306869424|gb|EFN01215.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 364

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 116/363 (31%), Positives = 194/363 (53%), Gaps = 14/363 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++  D  +M  A+  ++  +G T+ NP V C+IVK+G ++  G     G  HAE  A+  
Sbjct: 1   MTDLD--YMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLH 58

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
             E+  GATAYVTLEPC H+GR+PPC+  +IE GI++V +   DP+  V+GRG   L Q 
Sbjct: 59  CKEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGANQLRQA 118

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +V+ +++ E       +      KR ++ +K A++ D  I      S  ITG  ++ 
Sbjct: 119 GVEVVEGLLKEECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATGSGESKWITGESARA 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +V   R Q  AI+VG+ TVLAD+P L  R+       P+RI+ D   +  LD ++++TA 
Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMP--NAKQPVRIVCDSQLRTPLDCQLVQTAK 236

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
               +I T +DD      FR   ++++ C  R    DL+ LL  L    + SLL+EGG++
Sbjct: 237 EYRTVIATVSDDLQKIEQFRPLGVDVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352
           +  S + S +V+ +  Y +  ++G     +P+    +++    V+      +  G D+ L
Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356

Query: 353 EYI 355
           +Y+
Sbjct: 357 DYV 359


>gi|307262983|ref|ZP_07544605.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306871609|gb|EFN03331.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 364

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 116/363 (31%), Positives = 192/363 (52%), Gaps = 14/363 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++  D  +M  A+  ++  +G T+ NP V C+IVK+G ++  G     G  HAE  A+  
Sbjct: 1   MTDLD--YMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLH 58

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
             E+  GATAYVTLEPC H+GR+PPC+  +IE GI++V +   DP+  V+GRG   L Q 
Sbjct: 59  CKEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGANQLRQA 118

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +V+ +++ E       +      KR ++ +K A++ D  I      S  ITG  ++ 
Sbjct: 119 GVEVVEGLLKEECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATGSGESKWITGESARA 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +V   R Q  AI+VG+ TVLAD+P L  R+       P+RI+ D   +  LD ++++TA 
Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMP--NAKQPVRIVCDSQLRTPLDCQLVQTAK 236

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
               +I T  DD      FR   + ++ C  R    DL+ LL  L    + SLL+EGG++
Sbjct: 237 EYRTVIATVCDDLQKVEQFRPLGVEVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352
           +  S + S +V+ +  Y +  ++G     +P+    +++    V+      +  G D+ L
Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356

Query: 353 EYI 355
           +Y+
Sbjct: 357 DYV 359


>gi|166030622|ref|ZP_02233451.1| hypothetical protein DORFOR_00288 [Dorea formicigenerans ATCC
           27755]
 gi|166029624|gb|EDR48381.1| hypothetical protein DORFOR_00288 [Dorea formicigenerans ATCC
           27755]
          Length = 377

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 120/375 (32%), Positives = 189/375 (50%), Gaps = 19/375 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++   G T+ NP V  +IVKDG +IG G  A  G  HAE  A+    E 
Sbjct: 5   DQDYMKRAIELAKKGEGWTNPNPMVGAVIVKDGRIIGEGYHARCGELHAERNAIASLTES 64

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GAT YVTLEPC HYG++PPC + I+E  I++VV+   DP+ +V+G+G + L   G+ +
Sbjct: 65  AEGATLYVTLEPCCHYGKTPPCTEAILEQKIKKVVIGSRDPNPKVAGKGAKILRDAGVAV 124

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V+  M  +       +      K  ++ +K A++ D  I      S  IT   ++ +V  
Sbjct: 125 VEDFMRDKCDELNPIFFHYITTKTPYVVMKYAMTLDGKIATKTGASKWITQEAARREVQY 184

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +R +   I+VGIGTVLADDP L  R+ GL   SP+RII D   ++ LDS+I+K+A     
Sbjct: 185 MRHRYMGIMVGIGTVLADDPMLNVRVEGL--KSPVRIICDSKLRIPLDSQIVKSAREYRT 242

Query: 246 IIVTENDDPV--LALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           I+   + + V       +   + I++C       +LK L+  L    + S+L+EGG  + 
Sbjct: 243 IVAYADLENVEKKKEILQTMGVEIVFCPDMKKHVNLKHLMEYLGKENIDSILLEGGGTLN 302

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDV---- 350
            S + + +V  +  + +  + G  G  +P++   +E                G D+    
Sbjct: 303 DSALRAGVVQEVQAFIAPKIFGGAGSRTPVDGIGIELPSQAAVLKFKDICQIGEDLKITC 362

Query: 351 -CLEYIGKNLCLQEL 364
             L    + LCLQEL
Sbjct: 363 QVLRKEQEELCLQEL 377


>gi|303249744|ref|ZP_07335948.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307251932|ref|ZP_07533833.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302651311|gb|EFL81463.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860624|gb|EFM92636.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 364

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 115/363 (31%), Positives = 192/363 (52%), Gaps = 14/363 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++  D  +M  A+  ++  +G T+ NP V C+IVK+G ++  G     G  HAE  A+  
Sbjct: 1   MTDLD--YMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLH 58

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
             E+  GATAYVTLEPC H+GR+PPC+  +IE GI++V +   DP+  V+GRG   L Q 
Sbjct: 59  CKEDLSGATAYVTLEPCCHHGRTPPCSNLLIERGIKKVFIGSSDPNPLVAGRGANQLRQA 118

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +V+ +++ E       +      K  ++ +K A++ D  I      S  ITG  ++ 
Sbjct: 119 GVEVVEGLLKEECDALNPIFFHYIQTKCPYVLMKYAMTADGKIATGSGESKWITGESARA 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +V   R Q  AI+VG+ TVLAD+P L  R+       P+RI+ D   +  LD ++++TA 
Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMP--NAKQPVRIVCDSQLRTPLDCQLVQTAK 236

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
               +I T  DD      FR   + ++ C  R    DL+ LL  L    + SLL+EGG++
Sbjct: 237 EYRTVIATVCDDLQKVEQFRPLGVEVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352
           ++ S + S +V+ +  Y +  ++G     +P+    +++    V+      +  G D+ L
Sbjct: 297 LSFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356

Query: 353 EYI 355
           +Y+
Sbjct: 357 DYV 359


>gi|260893814|ref|YP_003239911.1| riboflavin biosynthesis protein RibD [Ammonifex degensii KC4]
 gi|260865955|gb|ACX53061.1| riboflavin biosynthesis protein RibD [Ammonifex degensii KC4]
          Length = 370

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 137/367 (37%), Positives = 192/367 (52%), Gaps = 12/367 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M     D  FM  AL  +    G TS NP V  ++VK+G VI  G     G PHAE++AL
Sbjct: 1   MENLKEDEFFMRRALELALKARGRTSPNPMVGAVLVKEGRVIAEGYHRRAGMPHAEIEAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGEEARGAT YV LEPC H GR+ PC + II  GI+RVVV ++DP+  V+G+G++ L 
Sbjct: 61  RAAGEEARGATLYVNLEPCCHVGRTGPCTEAIIAAGIKRVVVAMEDPNPLVAGKGIKILR 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + G+ +   ++E E +     ++     +   + LK+A++ D  I  +   +  ITG  +
Sbjct: 121 EAGLEVTVGVLEQEARRLNEVFVKFITTREPFVVLKVAMTLDGKIATSTGEARWITGPEA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  VH LR   DAILVG GTVL DDP LT RL G     P+R+IL     L L ++++  
Sbjct: 181 RAYVHELRDTYDAILVGKGTVLKDDPSLTARLPGA--RDPVRVILSSLADLPLSARVLNL 238

Query: 240 ALLAPVII-VTENDDPVLALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGG 295
              AP  + VTE   P    A + K   ++ C      DLK LL  L  R +T +LVEGG
Sbjct: 239 NSSAPTWVAVTEQAPPSRIKALQGKGAEVLVCGPGPQVDLKLLLKELGRREITGVLVEGG 298

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDV 350
             V  SF+ +RLVD +I   +  + G    P P+    +E     +R         G+D 
Sbjct: 299 GTVNASFLANRLVDKVIWMVAPKIFGGTKAPGPVGGEGVEHPDRALRLKDLTVKKLGADF 358

Query: 351 CLEYIGK 357
           C E   +
Sbjct: 359 CFEGYPE 365


>gi|324114633|gb|EGC08601.1| riboflavin biosynthesis protein RibD [Escherichia fergusonii B253]
          Length = 367

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 128/367 (34%), Positives = 187/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVYALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRSLLIPEHNGHLDLVLLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+     +F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPHFKFNEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|191166718|ref|ZP_03028545.1| riboflavin biosynthesis protein RibD [Escherichia coli B7A]
 gi|309794861|ref|ZP_07689282.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 145-7]
 gi|190903229|gb|EDV62951.1| riboflavin biosynthesis protein RibD [Escherichia coli B7A]
 gi|308121514|gb|EFO58776.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 145-7]
 gi|320201655|gb|EFW76231.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-5-phosphoribosylaminouracil
           reductase [Escherichia coli EC4100B]
          Length = 367

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
             RAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSSEWPETVRTLLIPEHKGHLDLVILMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|325498303|gb|EGC96162.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia fergusonii ECD227]
          Length = 367

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 128/367 (34%), Positives = 187/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRSLLIPEHNGHLDLVLLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+     +F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPHFKFNEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|323191332|gb|EFZ76595.1| riboflavin biosynthesis protein RibD [Escherichia coli RN587/1]
          Length = 367

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    M    S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMTSGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|218703696|ref|YP_002411215.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli UMN026]
 gi|293403533|ref|ZP_06647624.1| ribD [Escherichia coli FVEC1412]
 gi|298379145|ref|ZP_06989026.1| ribD [Escherichia coli FVEC1302]
 gi|300900480|ref|ZP_07118647.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 198-1]
 gi|218430793|emb|CAR11667.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli UMN026]
 gi|291429386|gb|EFF02406.1| ribD [Escherichia coli FVEC1412]
 gi|298280258|gb|EFI21762.1| ribD [Escherichia coli FVEC1302]
 gi|300355961|gb|EFJ71831.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 198-1]
          Length = 367

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 187/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G       I   LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCILPGLEKLADALQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|295102179|emb|CBK99724.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Faecalibacterium prausnitzii L2-6]
          Length = 374

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 122/367 (33%), Positives = 187/367 (50%), Gaps = 12/367 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++ K+G +IG+G     G  HAE  AL    E+
Sbjct: 3   DKEYMRLALQLAKKGCGWTSPNPMVGAVVAKEGRIIGQGWHQRYGQAHAERNALASCTED 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            +GAT YVTLEPC HYG+ PPC   I+  GI RVVV   DP+  V+G+G+  L   GI +
Sbjct: 63  PQGATLYVTLEPCCHYGKQPPCVDAILGAGIHRVVVGSADPNPLVAGKGITILRAHGIDV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
            + +++ E       +      KR  +++K A++ D  I      S  ITG I++N V  
Sbjct: 123 TENVLQEECDALNKVFFHYITTKRPFVSMKYAMTMDGKIATYTGASKWITGEIARNHVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R +   I+VG+GT+LADDP LTCR+ G     P+RII D H +  L S+++ TA   P 
Sbjct: 183 QRHRFRGIMVGVGTILADDPLLTCRIEG--GRDPVRIICDTHLRTPLQSQVVMTAKQVPT 240

Query: 246 IIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           I+ T   DP    A+++    ++    +C   +L +L+  L    + S+L+EGG  +  S
Sbjct: 241 ILATCCGDPEKQAAYQQDGCRVLCLEAHCGHVNLLQLMEQLGQEQIDSILLEGGGTLNWS 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356
            + S +V  +  Y +  + G     +P+E   +            R +  G D  +E   
Sbjct: 301 ALESGIVQQVQAYIAPKLFGGRDAKAPIEGAGVPLPDAAFRLKNSRLEQLGKDFLIESEV 360

Query: 357 KNLCLQE 363
           +  CL E
Sbjct: 361 EYPCLPE 367


>gi|323965096|gb|EGB60555.1| riboflavin biosynthesis protein RibD [Escherichia coli M863]
 gi|327254735|gb|EGE66351.1| riboflavin biosynthesis protein RibD [Escherichia coli STEC_7v]
          Length = 367

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 187/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVTRVVAAMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TV+ADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVMADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDNQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++ +           +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQSGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADVPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|300818262|ref|ZP_07098473.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 107-1]
 gi|300529153|gb|EFK50215.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 107-1]
          Length = 367

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 186/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
           LLRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 LLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
             I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HHIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|307312211|ref|ZP_07591847.1| riboflavin biosynthesis protein RibD [Escherichia coli W]
 gi|306907713|gb|EFN38215.1| riboflavin biosynthesis protein RibD [Escherichia coli W]
 gi|315059691|gb|ADT74018.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli W]
 gi|323379743|gb|ADX52011.1| riboflavin biosynthesis protein RibD [Escherichia coli KO11]
 gi|324116898|gb|EGC10811.1| riboflavin biosynthesis protein RibD [Escherichia coli E1167]
          Length = 367

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
             RAQS AIL    TVLADDP LT R + L E             P+RI++D   ++  +
Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVLPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|218549926|ref|YP_002383717.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia fergusonii ATCC 35469]
 gi|218357467|emb|CAQ90106.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia fergusonii ATCC 35469]
          Length = 367

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 128/367 (34%), Positives = 187/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIATGVARVVASMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRSLLIPEHNGHLDLVLLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+     +F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPHFKFNEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|283834269|ref|ZP_06354010.1| riboflavin biosynthesis protein RibD [Citrobacter youngae ATCC
           29220]
 gi|291069791|gb|EFE07900.1| riboflavin biosynthesis protein RibD [Citrobacter youngae ATCC
           29220]
          Length = 367

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 133/367 (36%), Positives = 190/367 (51%), Gaps = 20/367 (5%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ +      T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDELYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGYHYRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAQGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEVEQLNKGFLKRMRTGFPYLQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP+LT R   L E             P+RI+LD H +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPQLTVRWPELGESTQASYPQENLRQPIRIVLDSHNQVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292
            +I++        IV   DD         ++I +   +   DL  L+  L  + + S+ V
Sbjct: 242 HRIVQQPGE--TWIVRTQDD-TRHWPESVRSIKVPEHNGHLDLVVLMMQLGKQQINSIWV 298

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGS 348
           E G  +A + + + LVD +I+Y +  ++G       +   LE+     +F        G 
Sbjct: 299 EAGPTLAGALLQAGLVDELIVYVAPKLLGSDARGLCVLPGLEKLADAPHFKFNEIRQVGP 358

Query: 349 DVCLEYI 355
           DVCL  I
Sbjct: 359 DVCLHLI 365


>gi|331661791|ref|ZP_08362714.1| riboflavin biosynthesis protein RibD [Escherichia coli TA143]
 gi|331060213|gb|EGI32177.1| riboflavin biosynthesis protein RibD [Escherichia coli TA143]
          Length = 367

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    M    S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMESGESQWITSPQARLDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|134299939|ref|YP_001113435.1| riboflavin biosynthesis protein RibD [Desulfotomaculum reducens
           MI-1]
 gi|134052639|gb|ABO50610.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Desulfotomaculum reducens MI-1]
          Length = 376

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 134/375 (35%), Positives = 194/375 (51%), Gaps = 15/375 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D  +M+ AL  +    G TS NP V  ++VKDG V+G+G  A  G  HAEV AL +AG
Sbjct: 2   DQDRHYMNMALELAAKARGRTSPNPMVGAVLVKDGEVVGKGFHAKAGGAHAEVVALADAG 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           + A+GAT YVTLEPC H+G++ PC + + + G++RVV  + DP+  V+G+GL  L   GI
Sbjct: 62  DRAKGATVYVTLEPCCHHGKTGPCTEALKKAGVKRVVAAMTDPNPLVAGKGLNILKDAGI 121

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +V  ++E E K     ++     K   I LK A S D  I  A   S  ITG  ++N  
Sbjct: 122 EVVSGLLEEEAKELNEVFIKYITTKIPFIVLKAATSLDGKIATASGESKWITGDTARNYG 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H LR   DAILVG+ TVLADDP LT RL   +   P+RII+D   +    +KI+     A
Sbjct: 182 HRLRDAYDAILVGVNTVLADDPSLTARLPEGRGKDPLRIIVDSMSRTPTSAKILTQESAA 241

Query: 244 PVIIVTENDDPVLALA-FRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298
             II T    PV   A        +I         DLKKL+ +L  + ++S+L+EGG  +
Sbjct: 242 HTIIATTQAAPVERRASLMAAGAEVIVVPGEGPGVDLKKLMVLLGEKQISSVLIEGGGKI 301

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLE 353
           + S +N+ +VD +  + +  +IG    P P+    ++          V     G+D+ + 
Sbjct: 302 SGSALNAGIVDKVAWFIAPKIIGGDLAPGPVRGEGIQFLKDATKLYKVTVQNLGADILIT 361

Query: 354 YI----GKNLCLQEL 364
                 G  + L EL
Sbjct: 362 GYTSKGGDKISLLEL 376


>gi|293408560|ref|ZP_06652399.1| riboflavin biosynthesis protein RibD [Escherichia coli B354]
 gi|291471738|gb|EFF14221.1| riboflavin biosynthesis protein RibD [Escherichia coli B354]
          Length = 367

 Score =  384 bits (987), Expect = e-105,   Method: Composition-based stats.
 Identities = 128/367 (34%), Positives = 186/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    M    S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMESGESQWITSPQARLDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G       I   LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCILPGLEKLADALQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|153855732|ref|ZP_01996746.1| hypothetical protein DORLON_02764 [Dorea longicatena DSM 13814]
 gi|149751955|gb|EDM61886.1| hypothetical protein DORLON_02764 [Dorea longicatena DSM 13814]
          Length = 378

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 186/377 (49%), Gaps = 22/377 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A++ ++   G T+ NP V  +IVKDG +IG G     G  HAE  A+    E 
Sbjct: 3   DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGRIIGEGYHKKCGELHAERNAIASLTES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GAT YVTLEPC HYG++PPC + IIE  I++VV+   DP+ +V+G+G Q L + GI +
Sbjct: 63  AEGATIYVTLEPCCHYGKTPPCTEAIIEQKIKKVVIGSRDPNPKVAGKGAQILRESGITV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V   M  E       +      K  ++ +K A++ D  I      S  ITG  ++ +V  
Sbjct: 123 VQDFMREECDCLNPVFFHYITTKTPYVVMKYAMTLDGKIATKTGASKWITGEPARQEVQH 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +R +   I+ GIGTVLADDP L  R+ G    SP+RI+ D   ++ LDS+I+++A     
Sbjct: 183 MRHRYMGIMAGIGTVLADDPMLNVRVEGW--KSPVRIVCDSSLRIPLDSQIVRSAKEYRT 240

Query: 246 IIVTENDDP-----VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
           I+     +              K ++ + C       DLKKL+T L   G+ S+L+EGG 
Sbjct: 241 IVAYAGREENEEITEKIERLHAKGVDTVCCPDEKGQIDLKKLMTYLGNEGIDSILLEGGG 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVC 351
            +  S + + +V  +  + +  + G     +P++   +          C      G D+ 
Sbjct: 301 TLNDSALRAGIVKEVHCFIAPKLFGGKNSKTPVQGIGIGLPSEALKLKCTDICRIGEDIR 360

Query: 352 L-----EYIGKNLCLQE 363
           +     E   +  CLQE
Sbjct: 361 IICQVCEKEQEGPCLQE 377


>gi|218693874|ref|YP_002401541.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli 55989]
 gi|218350606|emb|CAU96298.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli 55989]
          Length = 367

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
             RAQS AIL    TVLADDP LT R + L E             P+RI++D   ++  +
Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVMPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|331681807|ref|ZP_08382440.1| riboflavin biosynthesis protein RibD [Escherichia coli H299]
 gi|331081009|gb|EGI52174.1| riboflavin biosynthesis protein RibD [Escherichia coli H299]
          Length = 367

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 187/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARLDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGI---PSP-LEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G         P LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTMPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|307245212|ref|ZP_07527303.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254158|ref|ZP_07536003.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258621|ref|ZP_07540356.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306853856|gb|EFM86070.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862858|gb|EFM94807.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867278|gb|EFM99131.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 361

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 116/362 (32%), Positives = 193/362 (53%), Gaps = 14/362 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++  D  +M  A+  ++  +G T+ NP V C+IVK+G ++  G     G  HAE  A+  
Sbjct: 1   MTDLD--YMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAILH 58

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
             E+  GATAYVTLEPC H+GR+PPC+  +IE GI++V +   DP+  V+GRG   L Q 
Sbjct: 59  CKEDLFGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGAGQLRQA 118

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +V+ +++ E       +      KR ++ +K A++ D  I  +   S  ITG +++ 
Sbjct: 119 GVEVVEGLLKEECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATSTGESKWITGELARA 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +V   R Q  AI+VG+ TVLAD+P L  R+       P+RI+ D   +  LD ++++TA 
Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMP--NAKQPVRIVCDSQLRTPLDCQLVQTAK 236

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
               +I T  DD      FR   + ++ C  R    DL+ LL  L    + SLL+EGG++
Sbjct: 237 EYRTVIATVCDDLQKVEQFRPLGVEVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352
           +  S + S +V+ +  Y +  ++G     +P+    +++    V+      +  G D+ L
Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356

Query: 353 EY 354
           +Y
Sbjct: 357 DY 358


>gi|307256427|ref|ZP_07538209.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306865057|gb|EFM96958.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 364

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 116/363 (31%), Positives = 195/363 (53%), Gaps = 14/363 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++  D  +M  A+  ++  +G T+ NP V C+IVK+G ++  G     G  HAE  A+  
Sbjct: 1   MTDLD--YMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLH 58

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
             E+  GATAYVTLEPC H+GR+PPC+  +IE GI++V +   DP+  V+GRG   L Q 
Sbjct: 59  CKEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGAGQLRQA 118

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +V+ +++ E       +      KR ++ +K A++ D  I      S  ITG +++ 
Sbjct: 119 GVEVVEGLLKEECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATGTGESKWITGELARA 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +V   R Q  AI+VG+ TVLAD+P L  R+       P+RI+ D   +  LD ++++TA 
Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMP--NAKQPVRIVCDSQLRTPLDCQLVQTAK 236

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
               +I T +DD      FR   ++++ C  R    DL+ LL  L    + SLL+EGG++
Sbjct: 237 EYRTVIATVSDDLQKIEQFRPLGVDVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352
           +  S + S +V+ +  Y +  ++G     +P+    +++    V+      +  G D+ L
Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356

Query: 353 EYI 355
           +Y+
Sbjct: 357 DYV 359


>gi|157156281|ref|YP_001461596.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli E24377A]
 gi|157078311|gb|ABV18019.1| riboflavin biosynthesis protein RibD [Escherichia coli E24377A]
          Length = 367

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
             RAQS AIL    TVLADDP LT R + L E             P+RI++D   ++  +
Sbjct: 182 RQRAQSYAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVLPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|301022597|ref|ZP_07186469.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 69-1]
 gi|300397478|gb|EFJ81016.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 69-1]
          Length = 367

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
             RAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|315616646|gb|EFU97263.1| riboflavin biosynthesis protein RibD [Escherichia coli 3431]
          Length = 367

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 187/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I+ G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIDAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
           LLRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++  
Sbjct: 182 LLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPV 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|295399034|ref|ZP_06809016.1| riboflavin biosynthesis protein RibD [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312110361|ref|YP_003988677.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y4.1MC1]
 gi|294978500|gb|EFG54096.1| riboflavin biosynthesis protein RibD [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215462|gb|ADP74066.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y4.1MC1]
          Length = 361

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 127/359 (35%), Positives = 191/359 (53%), Gaps = 9/359 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M  A+  ++  +G TS NP V  ++V  G ++G G     G PHAEV A+  AGE+
Sbjct: 4   DEQYMRLAIEMAKAGIGQTSPNPIVGAVVVNSGEIVGFGAHLKAGEPHAEVHAIRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSHYG++PPCA  +I+ G+RRVV+   DP+  V+G+G++ L   GI +
Sbjct: 64  AKGATVYVTLEPCSHYGKTPPCADLLIDAGVRRVVIATTDPNPLVAGKGIEKLRNAGIDV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +++ E       +      K   +TLK A S D  I  A   S  IT   ++  VH 
Sbjct: 124 KLGVLKEEADELNRVFFHYIATKTPFVTLKYASSLDGKIATATGESKWITSEAAREDVHR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            RA  DAILVG+ TV+AD+P LT RL G    +P+RI+LD H +  L++ I++       
Sbjct: 184 YRAVHDAILVGVDTVIADNPSLTVRLPG-SGKNPIRIVLDTHLRTPLEANILQDGQAETW 242

Query: 246 IIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           +I            +  KN+ +I       ++ +LL +L  R +TSL VEGG+ V  SF+
Sbjct: 243 LIAGSGVSGEKKKRYESKNVQVISMSTPHINIDELLHVLGERRITSLFVEGGSRVHDSFV 302

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGK 357
            +  V+ I+ Y +  +IG    P+P+                 R +  G D+ +  I K
Sbjct: 303 RAGAVNEIVAYFAPKLIGGKQAPTPIGGIGFASMADVMQLQIRRVETIGPDIKIVAIPK 361


>gi|170021214|ref|YP_001726168.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli ATCC 8739]
 gi|188492525|ref|ZP_02999795.1| riboflavin biosynthesis protein RibD [Escherichia coli 53638]
 gi|194438906|ref|ZP_03070991.1| riboflavin biosynthesis protein RibD [Escherichia coli 101-1]
 gi|253774601|ref|YP_003037432.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254160480|ref|YP_003043588.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli B str. REL606]
 gi|300930291|ref|ZP_07145704.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 187-1]
 gi|312970509|ref|ZP_07784690.1| riboflavin biosynthesis protein RibD [Escherichia coli 1827-70]
 gi|169756142|gb|ACA78841.1| riboflavin biosynthesis protein RibD [Escherichia coli ATCC 8739]
 gi|188487724|gb|EDU62827.1| riboflavin biosynthesis protein RibD [Escherichia coli 53638]
 gi|194422200|gb|EDX38202.1| riboflavin biosynthesis protein RibD [Escherichia coli 101-1]
 gi|242376192|emb|CAQ30883.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Escherichia coli BL21(DE3)]
 gi|253325645|gb|ACT30247.1| riboflavin biosynthesis protein RibD [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972381|gb|ACT38052.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli B str. REL606]
 gi|253976591|gb|ACT42261.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli BL21(DE3)]
 gi|300461863|gb|EFK25356.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 187-1]
 gi|310337158|gb|EFQ02296.1| riboflavin biosynthesis protein RibD [Escherichia coli 1827-70]
 gi|323963400|gb|EGB58962.1| riboflavin biosynthesis protein RibD [Escherichia coli H489]
 gi|323972264|gb|EGB67474.1| riboflavin biosynthesis protein RibD [Escherichia coli TA007]
          Length = 367

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 186/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
           LLRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++  
Sbjct: 182 LLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPV 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPAHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|239827589|ref|YP_002950213.1| riboflavin biosynthesis protein RibD [Geobacillus sp. WCH70]
 gi|239807882|gb|ACS24947.1| riboflavin biosynthesis protein RibD [Geobacillus sp. WCH70]
          Length = 361

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 127/359 (35%), Positives = 192/359 (53%), Gaps = 9/359 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M  A+  ++  +G TS NP V  ++VKDG ++G G     G  HAEV A+  AGE+
Sbjct: 4   DEQYMRLAIEIAKAGIGQTSPNPVVGAVVVKDGEIVGFGAHLKAGELHAEVHAIRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+G+T YVTLEPCSHYG++PPCA  ++E G++RVV+   DP+  V+G+G++ L   GI +
Sbjct: 64  AKGSTVYVTLEPCSHYGKTPPCADLLVETGVQRVVIATTDPNPLVAGKGIEKLRSAGIDV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +++ E       +      K   +TLK A S D  I      S  IT   ++  VH 
Sbjct: 124 KLGVLKEEADELNRVFFHYIAAKTPFVTLKYASSLDGKIATTTGESKWITSEAAREDVHR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            RA  DAILVG+ TV+AD+P LT RL      +P+RI+LD H +  LD+ I+        
Sbjct: 184 YRAVHDAILVGVNTVIADNPSLTVRLPEG-GKNPIRIVLDTHLRTPLDANILNDGQAETW 242

Query: 246 IIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           I+V           + K+N+ II       D+ +LL +L  + +TSL VEGG+ V  SF+
Sbjct: 243 IVVGSEISVEKRKRYEKENVQIISMKKPHIDIDELLRVLGEKRITSLFVEGGSHVHDSFV 302

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIGK 357
            ++ V+ I+ Y +  +IG    P+P+                 R +  G D+ +  I K
Sbjct: 303 RAKAVNEIVAYFAPKIIGGKQAPTPIGGIGFAGMADVMQLEIRRVETIGPDIKIVAIPK 361


>gi|16128399|ref|NP_414948.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89107284|ref|AP_001064.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli str. K-12 substr. W3110]
 gi|170080000|ref|YP_001729320.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238899702|ref|YP_002925498.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli BW2952]
 gi|256023969|ref|ZP_05437834.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia sp. 4_1_40B]
 gi|300947935|ref|ZP_07162083.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 116-1]
 gi|300957979|ref|ZP_07170144.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 175-1]
 gi|301025699|ref|ZP_07189215.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 196-1]
 gi|301647336|ref|ZP_07247148.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 146-1]
 gi|331640931|ref|ZP_08342066.1| riboflavin biosynthesis protein RibD [Escherichia coli H736]
 gi|140252|sp|P25539|RIBD_ECOLI RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
           RecName:
           Full=Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase; Includes: RecName:
           Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|581147|emb|CAA45735.1| unnamed protein product [Escherichia coli K-12]
 gi|1773098|gb|AAB40170.1| riboflavin biosynthesis protein RibG [Escherichia coli]
 gi|1786616|gb|AAC73517.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|73853031|emb|CAJ28593.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Escherichia coli]
 gi|85674554|dbj|BAE76194.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli str. K12 substr. W3110]
 gi|169887835|gb|ACB01542.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238861183|gb|ACR63181.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli BW2952]
 gi|260450399|gb|ACX40821.1| riboflavin biosynthesis protein RibD [Escherichia coli DH1]
 gi|299880011|gb|EFI88222.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 196-1]
 gi|300315315|gb|EFJ65099.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 175-1]
 gi|300452535|gb|EFK16155.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 116-1]
 gi|301074481|gb|EFK89287.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 146-1]
 gi|309700676|emb|CBI99972.1| riboflavin biosynthesis protein [Escherichia coli ETEC H10407]
 gi|315135096|dbj|BAJ42255.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
           / 5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli DH1]
 gi|323938599|gb|EGB34848.1| riboflavin biosynthesis protein RibD [Escherichia coli E1520]
 gi|323943220|gb|EGB39376.1| riboflavin biosynthesis protein RibD [Escherichia coli E482]
 gi|331037729|gb|EGI09949.1| riboflavin biosynthesis protein RibD [Escherichia coli H736]
          Length = 367

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 186/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
           LLRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++  
Sbjct: 182 LLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPV 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|253578467|ref|ZP_04855739.1| riboflavin biosynthesis protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850785|gb|EES78743.1| riboflavin biosynthesis protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 375

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 118/364 (32%), Positives = 185/364 (50%), Gaps = 12/364 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D ++M  AL  ++  +G T+ NP V  +IVK G VIG+G     G PHAE +AL    
Sbjct: 8   EKDRQYMKMALELAQKGMGFTAPNPMVGAVIVKRGKVIGQGYHRKYGEPHAEREALASCT 67

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E+  GA+ YVTLEPC HYG+ PPC   I+E GIRRV++   DP+  VSG+G++ L + GI
Sbjct: 68  EQPEGASIYVTLEPCCHYGKQPPCVNAILESGIRRVIIGSSDPNPLVSGKGIRILKEHGI 127

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            + + +++ E      A+      ++ ++ +K A++ D  I      S  +TG  ++  V
Sbjct: 128 EVTENVLKEECDKLNEAFFYYIQNQKPYVVMKYAMTMDGKIATYTGASRWVTGEAARMHV 187

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
              R +   I+ G+GTVLADDP LTCRL      +P+RII D H +  L+S+I+KTA   
Sbjct: 188 QKQRLKYTGIMAGVGTVLADDPMLTCRLE--NGRNPVRIICDSHLRTPLNSRIVKTASTI 245

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299
           P I  T + D      +      ++    +    DL +L+ +L    + S+L+EGG  + 
Sbjct: 246 PTIFATSSKDQQKIKNYEDMGCKVLDVPEKNGHIDLNRLMELLGAAKIDSILLEGGGTLN 305

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVCLEY 354
            S + S +V  +  Y +  + G     +P+E          +          G D  +E 
Sbjct: 306 WSALESGIVQKVQTYIAPKLFGGESAKTPIEGKGFPDPASAILLKNSEIIRIGDDFLIES 365

Query: 355 IGKN 358
             K+
Sbjct: 366 EVKS 369


>gi|237730390|ref|ZP_04560871.1| riboflavin bifunctional biosynthesis protein ribD [Citrobacter sp.
           30_2]
 gi|226905929|gb|EEH91847.1| riboflavin bifunctional biosynthesis protein ribD [Citrobacter sp.
           30_2]
          Length = 367

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 131/364 (35%), Positives = 186/364 (51%), Gaps = 18/364 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ +      T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDELYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAQGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEVEQLNKGFLKRMRTGFPYLQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP+LT R + L E             P+RI+LD   +++  
Sbjct: 182 RLRAQSHAILTSSATVLADDPQLTVRWSELGESTQASYPQEELRQPIRIVLDSQNQVTPA 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++        IV   DDP       +      +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWIVRTEDDPRSWPETVRSLKVPEHNGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G       +   LE+     +F        G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYVAPKLLGSDARGLCVLPGLEKLADAPHFKFNEIRQVGPD 359

Query: 350 VCLE 353
           VCL 
Sbjct: 360 VCLH 363


>gi|331676081|ref|ZP_08376793.1| riboflavin biosynthesis protein RibD [Escherichia coli H591]
 gi|331076139|gb|EGI47421.1| riboflavin biosynthesis protein RibD [Escherichia coli H591]
          Length = 367

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
             RAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++            LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLDSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|165975842|ref|YP_001651435.1| riboflavin-specific deaminase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165875943|gb|ABY68991.1| riboflavin-specific deaminase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 364

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 116/363 (31%), Positives = 193/363 (53%), Gaps = 14/363 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++  D  +M  A+  ++  +G T+ NP V C+IVK+G ++  G     G  HAE  A+  
Sbjct: 1   MTDLD--YMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLH 58

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
             E+  GATAYVTLEPC H+GR+PPC+  +IE GI++V +   DP+  V+GRG   L Q 
Sbjct: 59  CKEDLFGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGAGQLRQA 118

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +V+ +++ E       +      KR ++ +K A++ D  I      S  ITG +++ 
Sbjct: 119 GVEVVEGLLKEECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATGTGESKWITGELARA 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +V   R Q  AI+VG+ TVLAD+P L  R+       P+RI+ D   +  LD ++++TA 
Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMP--NAKQPVRIVCDSQLRTPLDCQLVQTAK 236

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
               +I T  DD      FR   + ++ C  R    DL+ LL  L    + SLL+EGG++
Sbjct: 237 EYRTVIATVCDDLQKVEQFRPLGVEVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352
           +  S + S +V+ +  Y +  ++G     +P+    +++    V+      +  G D+ L
Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356

Query: 353 EYI 355
           +Y+
Sbjct: 357 DYV 359


>gi|33152274|ref|NP_873627.1| riboflavin biosynthesis protein RibD [Haemophilus ducreyi 35000HP]
 gi|33148497|gb|AAP96016.1| riboflavin-specific deaminase [Haemophilus ducreyi 35000HP]
          Length = 368

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 114/358 (31%), Positives = 178/358 (49%), Gaps = 12/358 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A+  +    G T+ NP V C+IVK+  +I  G     G  HAE  A+    ++
Sbjct: 3   DVDYMARAIALAEQARGWTNPNPLVGCVIVKNDQIIAEGYHQKVGEWHAERNAILNCQQD 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GATAYVTLEPC H+GR+PPC   +IE GI +V V   DP+  V+G+G++ L   GI +
Sbjct: 63  LTGATAYVTLEPCCHHGRTPPCTDLLIERGINKVFVGSRDPNPLVTGKGIKQLQAAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +   M          +         ++ LK A++ D  I  A   S  I+G +++  V +
Sbjct: 123 ITDFMREACDQLNPIFFHYMQTTSPYVLLKYAMTADGKIATATGESKWISGELARQNVQI 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R Q  AI+VG+GTVLAD+P L  R+       P+R++ D H +  L  ++++TA   P 
Sbjct: 183 TRHQYSAIMVGVGTVLADNPMLNSRMP--NAKQPIRVVCDSHLRTPLACQLVQTARQYPT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           II T + D       +   + II C       DL  LL  L    + S+L+EGG+ +  S
Sbjct: 241 IIATASTDSTKIAQLKAFGVQIIQCKVANKQVDLVDLLAKLGAMQIDSVLLEGGSTLNFS 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354
            + + +V+ I  Y +  ++G     SP+    + +     N       Y G D+ L+Y
Sbjct: 301 ALKAGVVNRIHCYIAPKLLGGSTAKSPIGGAGILQLAEAVNLTLKSTQYIGDDILLDY 358


>gi|153811505|ref|ZP_01964173.1| hypothetical protein RUMOBE_01897 [Ruminococcus obeum ATCC 29174]
 gi|317501334|ref|ZP_07959537.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|149832246|gb|EDM87331.1| hypothetical protein RUMOBE_01897 [Ruminococcus obeum ATCC 29174]
 gi|316897298|gb|EFV19366.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 395

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 121/374 (32%), Positives = 187/374 (50%), Gaps = 19/374 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A++ ++   G T+ NP V  +IVKDG +IG G     G  HAE  A+    E 
Sbjct: 23  DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGKIIGEGYHKKYGELHAERNAIASLTES 82

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GA  YVTLEPC H+G++PPC + IIE  IR+VV+   DP+ +V+G+G+Q L + G+ +
Sbjct: 83  AEGAVIYVTLEPCCHHGKTPPCTEAIIEQKIRKVVIGSRDPNPKVAGKGVQMLREAGVTV 142

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V+  M  E       +      K  ++ +K A++ D  I      S  ITG  ++ +V  
Sbjct: 143 VEDFMREECDQLNPVFFHYITTKTPYVVMKYAMTLDGKIATKTGASKWITGESARKEVQH 202

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +R Q   I+ GIGTVLADDP L  R+ G    SP+RI+ D   ++   S+I+K+A     
Sbjct: 203 MRHQYMGIMAGIGTVLADDPMLNVRVEGW--KSPVRIVCDSKLRIPPGSQIVKSAEKYRT 260

Query: 246 II--VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299
           I+    + +            +  IYC       DLKKL+  L  RG+ S+L+EGG  + 
Sbjct: 261 IVAYAEQKNAKEKIKILHTMGVETIYCPDEKNQIDLKKLMADLGNRGIDSILLEGGGTLN 320

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLEY 354
            S + + +V  +  + +  + G     +P+E   +E     V   Y      G D+ ++ 
Sbjct: 321 DSALRAGIVKEVQAFVAPKLFGGVAGKTPVEGIGVELPSEAVELKYTDICQIGEDIRIKC 380

Query: 355 -----IGKNLCLQE 363
                  +  CLQE
Sbjct: 381 QVCDKKQEESCLQE 394


>gi|307244664|ref|ZP_07526768.1| riboflavin biosynthesis protein RibD [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492045|gb|EFM64094.1| riboflavin biosynthesis protein RibD [Peptostreptococcus stomatis
           DSM 17678]
          Length = 372

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 132/374 (35%), Positives = 198/374 (52%), Gaps = 18/374 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63
            + ++MS A+  ++   G T+ NP V  +IVKDG V+G+G   + GC HAE +AL++   
Sbjct: 1   MEEKYMSMAIELAKKACGYTNPNPMVGAVIVKDGQVLGKGYHTWCGCLHAEREALKDCQS 60

Query: 64  -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
            G    GAT YVTLEPC HYG++PPC + IIE GI +VVV   DP+ +V+G+G+Q L   
Sbjct: 61  RGVTVTGATMYVTLEPCCHYGKTPPCTEAIIENGIAKVVVGSLDPNPKVAGKGIQILKDH 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +V  +ME E       ++     K+  + +K A++ D  I      S  ITG  ++ 
Sbjct: 121 GINVVTGVMEKECDDLNEVFMHYIKNKKPFVVMKYAMTADGKIATRTGKSQWITGPEARG 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           QVH  R +   I+VGIGTVLADDP L CRL      SP RII D   ++ +DS I++TA 
Sbjct: 181 QVHKDRHRYAGIMVGIGTVLADDPTLNCRLE--DGLSPTRIICDTSLRIPMDSNIVRTAK 238

Query: 242 LAPVIIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
               II T + D       ++ +  I+      D  DL  L+  +   G+ S+L+EGG  
Sbjct: 239 TYDTIIATRSKDNEKIRKLKEASCQILVQDGQADRIDLVDLMDKVGSMGLDSVLLEGGGQ 298

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCL 352
           +  S + + +V+ + +Y    + G     SP+    ++     K       + FG D+ +
Sbjct: 299 LNWSALEAGIVNKVQVYIGNKIFGGNDAKSPVGGYGVDLPDQAKRLKLTGLEKFGPDLLI 358

Query: 353 EYIGKN---LCLQE 363
           EY  +N    C QE
Sbjct: 359 EYRVENEVVECSQE 372


>gi|256020381|ref|ZP_05434246.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Shigella sp. D9]
 gi|332281560|ref|ZP_08393973.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Shigella sp. D9]
 gi|332103912|gb|EGJ07258.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Shigella sp. D9]
          Length = 367

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 128/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GA AYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGAIAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
           LLRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 LLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
             I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HHIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|323705867|ref|ZP_08117439.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534863|gb|EGB24642.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 360

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 117/361 (32%), Positives = 196/361 (54%), Gaps = 13/361 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            ++M  AL+ ++  VG T+ NP V  +I+KDG +IG G   Y G PHAE+ AL+ A E+ 
Sbjct: 2   EKYMKRALQLAKLGVGHTNPNPLVGAVIIKDGRIIGEGYHEYYGGPHAEINALKNAKEDV 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
            GAT YVTLEPC H+G++PPC   +I+ GI+ V + ++DP+  V+GRG++ L + G+ + 
Sbjct: 62  NGATLYVTLEPCCHHGKTPPCVDAVIKSGIKNVFIAMEDPNELVAGRGIKKLEEAGLNVY 121

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +++ E +     ++     +  ++ LK A++ D  I      S  IT   S+  VH +
Sbjct: 122 TGLLKDEAEKLNEVFIKYITSREPYVILKSAMTIDGKISTFTGDSKWITNEKSREYVHKV 181

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R    AI+VGI TV+ D+P LT RL G    +P+R+I+D H ++ LD+ +I       +I
Sbjct: 182 RGSVMAIMVGINTVIKDNPHLTVRLQGY--KNPLRVIVDSHGRIPLDANVIIDKSAKTLI 239

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             T+        A +   ++++  + +D    L KL+  L  RG+ S+L+EGG  + +S 
Sbjct: 240 ATTDMMPHDKVKALKDLGVDVVTIEKKDNKVHLNKLIYTLGERGIDSILIEGGGTLNYSA 299

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE-YIG 356
           +   +VD ++ Y +  +IG     +P+E   +           +    F  D+ +E YI 
Sbjct: 300 LKEGIVDKVMFYIAPKIIGGSNSLTPVEGDGIALIKDAIMIEKIDIKKFDDDILIEGYIK 359

Query: 357 K 357
           K
Sbjct: 360 K 360


>gi|118479310|ref|YP_896461.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Bacillus thuringiensis str. Al Hakam]
 gi|229186356|ref|ZP_04313521.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BGSC 6E1]
 gi|118418535|gb|ABK86954.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Bacillus thuringiensis str. Al Hakam]
 gi|228597150|gb|EEK54805.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BGSC 6E1]
          Length = 379

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 127/369 (34%), Positives = 190/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC   +I+ GI RVV+   D +  VSG G + L + GI +
Sbjct: 72  AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+      +P+R+ILD H +    S +I  +L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDSLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV  + +     ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF+
Sbjct: 251 IIVGTDVNKEKIASYESENITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            ++  + II Y S  +IG    P+              +         G D+ +    +N
Sbjct: 311 QTKYFNEIITYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTKCLQEL 379


>gi|47568170|ref|ZP_00238874.1| riboflavin biosynthesis protein RibD [Bacillus cereus G9241]
 gi|47555160|gb|EAL13507.1| riboflavin biosynthesis protein RibD [Bacillus cereus G9241]
          Length = 370

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 126/369 (34%), Positives = 193/369 (52%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE+
Sbjct: 3   DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC   +++ G++RVV+   D +  VSG G + L + GI +
Sbjct: 63  AKGATVYVTLEPCSHFGKTPPCCDLLLKKGVKRVVIATLDCNPLVSGNGKRRLEEAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+      +P+R+ILD H +    S +I   L    
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDGLAPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +P    ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF+
Sbjct: 242 IIVGKDVNPEKIASYESENIAIFQIKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            ++  + I+ Y S  +IG    P+        K     +         G D+ +    ++
Sbjct: 302 QTKHFNEIVTYISPKLIGGSNAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARS 361

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 362 EVTECLQEL 370


>gi|320173768|gb|EFW48951.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-5-phosphoribosylaminouracil
           reductase [Shigella dysenteriae CDC 74-1112]
          Length = 367

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
             I++             +D        +  +   +    DL  L+  L  + + S+ V+
Sbjct: 242 HHIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVD 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIHHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|218437502|ref|YP_002375831.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7424]
 gi|218170230|gb|ACK68963.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7424]
          Length = 362

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 123/356 (34%), Positives = 191/356 (53%), Gaps = 8/356 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           SSFD   M   +  +R   G TS NP V  +IVKDG VIG G     G PHAEV AL++A
Sbjct: 3   SSFDREMMQHCINLARQAAGKTSPNPMVGAVIVKDGQVIGEGFHPKAGQPHAEVFALKQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            E+A+GAT Y++LEPC+HYGR+PPC + +IE  + +VV+ + DPD RVSG G++ L + G
Sbjct: 63  AEQAKGATIYISLEPCNHYGRTPPCTEALIEAQVNKVVIGMIDPDPRVSGSGVKRLQEAG 122

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +V  + E   +     ++ R + K+    LK A++ D  I      S  ITG  S+  
Sbjct: 123 IEVVVGVEEDACRRLNEGFIHRVLSKKPFGILKYAMTLDGKIATTSGHSAWITGEASRRL 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LRA  DA+++G  TV  D+P LT    G+  H+P+R+++     L L++ + +T+ +
Sbjct: 183 VHHLRASCDAVIIGGNTVRQDNPHLTSH--GVSSHNPLRVVMSRSLNLPLEAHLWETSQV 240

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             ++   E  +P L     K+ + +I        +++  L  RG +S+L E G  +A   
Sbjct: 241 PTLVFTQEGMNPALQKQLLKRQVEVIELKSLSPSEVMHHLYERGFSSVLWECGGILAARA 300

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
           I   +V  ++ + +  +IG    PSP+ +  LEK         V      +D  +E
Sbjct: 301 IAEGMVQKVMAFIAPKIIGGNTAPSPVGDLGLEKMTEALQLEKVTFHQIENDFVIE 356


>gi|15614117|ref|NP_242420.1| riboflavin specific deaminase [Bacillus halodurans C-125]
 gi|10174171|dbj|BAB05273.1| riboflavin specific
           deaminase(diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase) [Bacillus halodurans C-125]
          Length = 368

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 129/358 (36%), Positives = 183/358 (51%), Gaps = 7/358 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M  AL  +    G TS NP V  ++VKDG ++G G     G PHAEV A+  AGE+
Sbjct: 3   DEQYMKLALALAESARGQTSPNPLVGAVVVKDGQIVGMGAHLKAGEPHAEVHAIRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GATAYVTLEPCSHYG++PPCA  +IE G+ RVV+  +DP  +VSGRG++ L Q GI +
Sbjct: 63  AKGATAYVTLEPCSHYGKTPPCADLLIEAGVARVVIATEDPFPKVSGRGIRKLQQAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              + + E       +      KR ++T+K A + D         S  IT   ++  VH 
Sbjct: 123 EVGICKQEALDLNRIFFHFVRTKRPYVTIKSATTLDGKTATVQGNSKWITSEQAREDVHR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R + DAILVG+GTVLAD+P LT RL      +P+R+ILD   +  LD  +I        
Sbjct: 183 YRHEHDAILVGVGTVLADNPSLTTRLAAG-GLNPVRVILDRRLRTPLDRNVITDGKAPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           I   E  D     A  +K + +       ++ +L  L  + + S+ VEGGA V  SF+ +
Sbjct: 242 IFTEERADKAKKKALEEKGVQVFSLPNVSVEAVLETLREKNILSVFVEGGATVNGSFVKA 301

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358
             VD +I Y +  V G    P+ +    +        F        G DV +    K 
Sbjct: 302 GTVDQVITYLAPKVFGGAAAPTAIGGDGVIAVADALPFEVQEVIQIGPDVKIVARAKE 359


>gi|302875673|ref|YP_003844306.1| riboflavin biosynthesis protein RibD [Clostridium cellulovorans
           743B]
 gi|307688111|ref|ZP_07630557.1| riboflavin biosynthesis protein RibD [Clostridium cellulovorans
           743B]
 gi|302578530|gb|ADL52542.1| riboflavin biosynthesis protein RibD [Clostridium cellulovorans
           743B]
          Length = 364

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 125/364 (34%), Positives = 190/364 (52%), Gaps = 16/364 (4%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65
             +M  AL  ++   G  S NP V  +IVK+G +IG G     G PHAEV A+    +  
Sbjct: 3   ESYMRRALELAKLGAGRVSPNPMVGAVIVKNGEIIGEGYHKQYGGPHAEVNAIASVSDNG 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           E  G+T YVTLEPC HYG++PPC + II+  I+ VV+   DP+  V+G+G++ L  +GI 
Sbjct: 63  ELEGSTIYVTLEPCCHYGKTPPCTKAIIDNKIKTVVIGTLDPNPLVAGKGVEILRAEGIE 122

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           ++  ++E E      +++     K   + +K A++ D  I  +   S  IT   S+  VH
Sbjct: 123 VIVGVLEEECLKINESFMKYIKTKTPFVIMKAAMTLDGKIATSTGDSKWITNEESRINVH 182

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR +   I+VGI TVL DDPELTCRL G    SP RII+D   K+ L++K++       
Sbjct: 183 KLRNKVSGIMVGINTVLKDDPELTCRLEG--GASPKRIIVDSGLKIPLNAKVLNAKDKVE 240

Query: 245 VIIVTE-NDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299
           VI+ T    D        ++ + +I    +    +LKKL+  L    V S+L+EGG  + 
Sbjct: 241 VIVATTRKADESKVEVLERQGVKVIIVPEKEQKVNLKKLMEELGNLKVDSVLLEGGGTLC 300

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE- 353
            S +   ++D +  Y +  +IG     +P+E   + K     N   +R   FG D+ +E 
Sbjct: 301 FSALEEGIIDKVQFYIAPKIIGGENSKTPVEGVGINKIKDAINVKDLRVSTFGGDILIEG 360

Query: 354 YIGK 357
           YI K
Sbjct: 361 YIRK 364


>gi|82542902|ref|YP_406849.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Shigella boydii Sb227]
 gi|81244313|gb|ABB65021.1| bifunctional pyrimidine deaminase/reductase in pathway of
           riboflavin synthesis [Shigella boydii Sb227]
 gi|320186043|gb|EFW60788.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-5-phosphoribosylaminouracil
           reductase [Shigella flexneri CDC 796-83]
 gi|332098511|gb|EGJ03477.1| riboflavin biosynthesis protein RibD [Shigella boydii 3594-74]
          Length = 367

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
             I++             +D        +  +   +    DL  L+  L  + + S+  E
Sbjct: 242 HHIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWGE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|295108673|emb|CBL22626.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Ruminococcus obeum A2-162]
          Length = 375

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 121/374 (32%), Positives = 187/374 (50%), Gaps = 19/374 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A++ ++   G T+ NP V  +IVKDG +IG G     G  HAE  A+    E 
Sbjct: 3   DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGKIIGEGYHKKYGELHAERNAIASLTES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GA  YVTLEPC H+G++PPC + IIE  IR+VV+   DP+ +V+G+G+Q L + G+ +
Sbjct: 63  AEGAVIYVTLEPCCHHGKTPPCTEAIIEQKIRKVVIGSRDPNPKVAGKGVQMLREAGVTV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V+  M  E       +      K  ++ +K A++ D  I      S  ITG  ++ +V  
Sbjct: 123 VEDFMREECDQLNPVFFHYITTKTPYVVMKYAMTLDGKIATKTGASKWITGESARKEVQH 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +R Q   I+ GIGTVLADDP L  R+ G    SP+RI+ D   ++   S+I+K+A     
Sbjct: 183 MRHQYMGIMAGIGTVLADDPMLNVRVEGW--KSPVRIVCDSKLRIPPGSQIVKSAEKYRT 240

Query: 246 II--VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299
           I+    + +            +  IYC       DLKKL+  L  RG+ S+L+EGG  + 
Sbjct: 241 IVAYAEQKNAKEKIKILHTMGVETIYCPDEKNQIDLKKLMADLGNRGIDSILLEGGGTLN 300

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLEY 354
            S + + +V  +  + +  + G     +P+E   +E     V   Y      G D+ ++ 
Sbjct: 301 DSALRAGIVKEVQAFVAPKLFGGVAGKTPVEGIGVELPSEAVELKYTDICQIGEDIRIKC 360

Query: 355 -----IGKNLCLQE 363
                  +  CLQE
Sbjct: 361 QVCDKKQEESCLQE 374


>gi|228916750|ref|ZP_04080315.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228842937|gb|EEM88020.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 379

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 126/369 (34%), Positives = 190/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 12  DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC   +I+ GI RVV+   D +  VSG G + L + GI +
Sbjct: 72  AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+      +P+R+ILD H +    S +I  +L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDSLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           I+V  + +     ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF+
Sbjct: 251 IMVGRDVNKEKIASYESENITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            ++  + II Y S  +IG    P+              +         G D+ +    +N
Sbjct: 311 QAKYFNEIITYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTKCLQEL 379


>gi|323702710|ref|ZP_08114371.1| riboflavin biosynthesis protein RibD [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532373|gb|EGB22251.1| riboflavin biosynthesis protein RibD [Desulfotomaculum nigrificans
           DSM 574]
          Length = 375

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 124/359 (34%), Positives = 185/359 (51%), Gaps = 11/359 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D  FM  AL  +R   G TS NP V  ++VKDG V+G+G  A  G  HAEV AL +AG
Sbjct: 2   DQDKHFMQMALELARKARGRTSPNPMVGAVVVKDGQVVGQGWHAKAGTAHAEVVALADAG 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E+ARGAT YVTLEPC H+GR+ PC + +++ G++RVV  + DP+  V+G+GL  L   G+
Sbjct: 62  EQARGATVYVTLEPCCHHGRTGPCTEALLKAGVKRVVAAMTDPNPLVAGKGLAILRDAGV 121

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++ESE +     ++      R  + LK A S D  I  A   S  ITG  ++ + 
Sbjct: 122 EVQVGVLESEARQLNEIFIKYITTGRPFVVLKAATSLDGKIATATGESKWITGAAARTEG 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H LR   DAILVG+ T+LADDP LT RL   +   P+R+++D   +    ++++     A
Sbjct: 182 HRLRDIYDAILVGVNTILADDPALTTRLPEGRGKDPIRVVVDSTARTPTSARVLIQQSAA 241

Query: 244 PVIIVTENDDPVLALA-FRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAV 298
             II T    P    A        ++         DL KL+ +L  R +TS+L+EGG  +
Sbjct: 242 HTIIATTEAAPAERRASLMAAGAEVLVVPGQGPRVDLVKLMELLGQRQITSVLIEGGGKI 301

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352
             S + + +VD +  + +  +IG    P P+    +           V     G D+ +
Sbjct: 302 NGSALAAGIVDKVAWFLAPKIIGGDAAPGPVRGAGIMSLNDATKLYNVSLQRVGEDILI 360


>gi|300924134|ref|ZP_07140126.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 182-1]
 gi|301330725|ref|ZP_07223327.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 78-1]
 gi|300419587|gb|EFK02898.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 182-1]
 gi|300843386|gb|EFK71146.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 78-1]
          Length = 367

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 128/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GA AYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGAIAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
           LLRAQS AIL    TVLADDP LT R + L E             P+RI++D   ++  +
Sbjct: 182 LLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVMPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|42783225|ref|NP_980472.1| riboflavin biosynthesis protein RibD [Bacillus cereus ATCC 10987]
 gi|42739153|gb|AAS43080.1| riboflavin biosynthesis protein RibD [Bacillus cereus ATCC 10987]
          Length = 370

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 126/369 (34%), Positives = 189/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE+
Sbjct: 3   DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVYALHMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +I+ G++RVV+   D +  VSG G + L + GI +
Sbjct: 63  AKGATVYVTLEPCSHFGKTPPCCELLIKKGVKRVVIATLDCNPLVSGNGKRKLEEAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  S+  VH 
Sbjct: 123 TTGVLEAEAILLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEESRADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+      +P+R+ILD H +    S +I   L    
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDGLAPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           I V    D     ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF+
Sbjct: 242 IFVGNGVDKKKIASYESENIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            ++  + I+ Y S  +IG    P+              +         G D+ +    ++
Sbjct: 302 QTKYFNEIVTYISPKLIGGKNAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARS 361

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 362 EVTECLQEL 370


>gi|332652827|ref|ZP_08418572.1| riboflavin biosynthesis protein RibD [Ruminococcaceae bacterium
           D16]
 gi|332517973|gb|EGJ47576.1| riboflavin biosynthesis protein RibD [Ruminococcaceae bacterium
           D16]
          Length = 368

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 125/357 (35%), Positives = 181/357 (50%), Gaps = 12/357 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL  +R  +G TS NP V  ++VKDG +IG+G     G  HAE +AL+     
Sbjct: 3   DTDYMNLALELARRGMGWTSPNPMVGAVLVKDGEIIGQGWHTRYGELHAEREALKNCTGS 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             G T YVTLEPC H GR PPC Q I++ GI RVVV  DDP+  V+G+GL+ L + GI +
Sbjct: 63  PAGTTLYVTLEPCCHQGRQPPCTQAILDAGITRVVVGSDDPNPLVAGKGLELLREHGIQV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              + +         +      +R ++ LK A++ D  I      S  +TG  ++ +VH 
Sbjct: 123 ETGVCKQACDALNQVFFHFITTRRPYVVLKYAMTMDGKIATRTGASKWVTGETARKRVHE 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R +  AIL G+GTVLADDP LTCR+ G    +P+R+I D H +  L+S+I++TA   P 
Sbjct: 183 DRHRYRAILAGVGTVLADDPLLTCRMEG--GRNPIRVICDTHLRTPLESQIVRTAQEVPT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           I+ T   +      +      +     R    DL  L+  L    + S+L+EGG  +  S
Sbjct: 241 ILATACPEEARRFPYEAAGCRVWVLPERKGHVDLAALMDRLGAENIDSVLLEGGGTLNWS 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLE 353
            +   LV  +  Y +  + G G   SP+E   +E     VR         G D  LE
Sbjct: 301 ALEQGLVQKVQAYIAPKLFGGGAAKSPVEGLGVEIPDQAVRLIHTTITPLGDDFLLE 357


>gi|196047192|ref|ZP_03114408.1| riboflavin biosynthesis protein RibD [Bacillus cereus 03BB108]
 gi|225866095|ref|YP_002751473.1| riboflavin biosynthesis protein RibD [Bacillus cereus 03BB102]
 gi|196021941|gb|EDX60632.1| riboflavin biosynthesis protein RibD [Bacillus cereus 03BB108]
 gi|225786227|gb|ACO26444.1| riboflavin biosynthesis protein RibD [Bacillus cereus 03BB102]
          Length = 370

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 127/369 (34%), Positives = 190/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 3   DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC   +I+ GI RVV+   D +  VSG G + L + GI +
Sbjct: 63  AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+      +P+R+ILD H +    S +I  +L    
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDSLAPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV  + +     ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF+
Sbjct: 242 IIVGTDVNKEKIASYESENITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            ++  + II Y S  +IG    P+              +         G D+ +    +N
Sbjct: 302 QTKYFNEIITYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 361

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 362 EVTKCLQEL 370


>gi|147678096|ref|YP_001212311.1| pyrimidine reductase and pyrimidine deaminase [Pelotomaculum
           thermopropionicum SI]
 gi|146274193|dbj|BAF59942.1| pyrimidine reductase and Pyrimidine deaminase [Pelotomaculum
           thermopropionicum SI]
          Length = 376

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 135/362 (37%), Positives = 197/362 (54%), Gaps = 10/362 (2%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL  +    G TS NP V  ++VK+G+V+G+G     G PHAE+ AL+EAG 
Sbjct: 2   DDRYYMNMALELAARARGRTSPNPMVGAVLVKNGVVVGQGYHMKAGTPHAEIIALKEAGN 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           EARGAT YV LEPC HYGR+ PCA  +IE G+ RVV  + DP+  V+G GL+ + + G+ 
Sbjct: 62  EARGATLYVNLEPCCHYGRTGPCADAVIEAGVARVVAAMADPNPLVAGGGLKKIKEAGLE 121

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   +ME E +    A++     +R  +  K A+S D  I      S  ITG  ++  VH
Sbjct: 122 VTLGVMEDEARELNEAFIKYVTTRRPFVLAKAALSLDGKIAARTGRSKWITGPAARAYVH 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR   DAILVGIGT+LADDP LT RL G     P+R+ILD   +  L++++IK    AP
Sbjct: 182 QLRDWYDAILVGIGTILADDPSLTARLPGGGGRDPVRVILDSLARTPLNARVIKQKSKAP 241

Query: 245 VII-VTENDDPVLALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
            +I VT    P    A ++    ++        DL +L+ IL  + +TS+L+EGGA V  
Sbjct: 242 TVIAVTAGAPPGRVKALQEAGAQVVVVNSGPRVDLPELMRILAEKEITSVLIEGGAEVHG 301

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355
           S   + +VD +  + +  +IG    P P+    ++          ++      D+C+E  
Sbjct: 302 SAFAAGIVDKVAWFIAPKIIGGRDAPGPVGGEGVDDPGGALELERIKVSRLDQDICIEGY 361

Query: 356 GK 357
            K
Sbjct: 362 VK 363


>gi|229146686|ref|ZP_04275053.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST24]
 gi|228636856|gb|EEK93319.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST24]
          Length = 379

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 126/369 (34%), Positives = 191/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE+
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC   +++ G++RVV+   D +  VSG G + L + GI +
Sbjct: 72  AKGATVYVTLEPCSHFGKTPPCCDLLLKKGVKRVVIATLDCNPLVSGNGKRRLEEAGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+      +P+R+ILD H +    S +I   L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDGLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +P    ++  +NI I     + +K   +L +L  + + SL VEGG  V  SF+
Sbjct: 251 IIVGKDVNPEKIASYESENIAIFQIKTKQIKIQDVLHLLGEKQILSLFVEGGQTVHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            ++  + I+ Y S  +IG    P+              +         G D+ +    ++
Sbjct: 311 QTKHFNEIVTYISPKLIGGSNAPTLFGGNGFSTLQDALSLKIQEMKQIGDDIKIVANARS 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTECLQEL 379


>gi|228987304|ref|ZP_04147425.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228772533|gb|EEM20978.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 379

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 192/369 (52%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE+
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC   +++ G++RVV+   D +  VSG G + L + GI +
Sbjct: 72  AKGATVYVTLEPCSHFGKTPPCCDLLLKKGVKRVVIATLDCNPLVSGNGKRRLEEAGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+      +P+R+ILD H +    S +I   L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDGLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +P    ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF+
Sbjct: 251 IIVGKDVNPEKIASYESENIAIFQIKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            ++  + I+ Y S  +IG    P+              +         G D+ +    ++
Sbjct: 311 QTKHFNEIVTYISPKLIGGSNAPTLFGGNGFSTLQDALSLKIQEMKQIGDDIKIVANARS 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTECLQEL 379


>gi|39996788|ref|NP_952739.1| riboflavin biosynthesis protein RibD [Geobacter sulfurreducens PCA]
 gi|39983676|gb|AAR35066.1| riboflavin biosynthesis protein RibD [Geobacter sulfurreducens PCA]
 gi|307634902|gb|ADI84522.2| 2,5-diamino-6-(5'-phosphoribosylamino)-4-(3H)-pyrimidinone
           deaminase and 5-amino-6-(5'-phosphoribosylamino)uracil
           reductase [Geobacter sulfurreducens KN400]
          Length = 369

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 132/369 (35%), Positives = 199/369 (53%), Gaps = 12/369 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++SF    M  AL  +R  +G TS NP V C+IV++G+V+G G     G PHAEV AL E
Sbjct: 1   MTSFHENMMRRALSLARKGIGKTSPNPVVGCVIVREGVVVGEGWHRKAGTPHAEVHALRE 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  ARGA  YVTLEPCSH+GR+PPCA  ++  G+ RV V + DP+  V G+G+  L   
Sbjct: 61  AGPLARGADVYVTLEPCSHFGRTPPCADALVAAGVARVFVGMVDPNPTVCGKGITRLEAV 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI ++  ++  E ++    ++         +TLK A++ D     A   S  IT   S+ 
Sbjct: 121 GIQVITGVLGKECRLINEPFVKHVSTGLPFLTLKSALTLDGKTATALGDSRWITNDKSRR 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH LRA+ DA++VG+GT+LAD+PELT R   ++  +P+RII+D   K+  +S+++   L
Sbjct: 181 YVHQLRAEVDAVMVGVGTLLADNPELTVR--HVKGKNPLRIIVDSSLKIPNESRVLGDDL 238

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAA 297
               II T +DD         +   +I C       DL+ L+  L  +G+ S+L+EGG+ 
Sbjct: 239 ARGTIIATTSDDQERIGFLETRGAQVIRCASDKGRVDLRDLMQRLGAKGIQSILLEGGSE 298

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
           +A + +   L+D  IL+ + IV+G            +E+          R   FG DV +
Sbjct: 299 LAGAALRQGLIDKFILFYAPIVLGGAAGIGLFGGKSVERMGRAFRLETARVRRFGGDVMI 358

Query: 353 EYIGKNLCL 361
           E   +  C 
Sbjct: 359 EAYPEEACS 367


>gi|255658129|ref|ZP_05403538.1| riboflavin biosynthesis protein RibD [Mitsuokella multacida DSM
           20544]
 gi|260849436|gb|EEX69443.1| riboflavin biosynthesis protein RibD [Mitsuokella multacida DSM
           20544]
          Length = 363

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 123/341 (36%), Positives = 177/341 (51%), Gaps = 4/341 (1%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  FM  AL  +R   G TS NP V  +IV+ G ++  G     G PHAE+ AL  AGE
Sbjct: 2   QDEEFMREALELARNAEGRTSPNPMVGAVIVQGGRIVAAGWHRKAGTPHAEIHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            A+GAT YVTLEPCSHYGR+ PCA+ ++E GI+R V+ + DP+  V+GRG++ L   G+ 
Sbjct: 62  LAKGATLYVTLEPCSHYGRTGPCAKAVVEAGIKRCVIAMKDPNPLVAGRGIKILEDAGVE 121

Query: 126 V-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
               ++E E +     +L    EK   + LK A++ D  I      S  IT   S+ +VH
Sbjct: 122 TVCGVLEEEARRLNEVFLKWVPEKIPFVALKTAMTLDGKIATRTGESQWITNETSRRRVH 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             R + D I VGIGTVL DDP LT RL      +P+RII+D   +  L +K++       
Sbjct: 182 EYRDRYDGIFVGIGTVLHDDPSLTTRLPDGTGKNPVRIIVDSQARTPLTAKVVCDGQAKT 241

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           ++ VTE        A     + ++        DL+ L+ +L  R + S+ VEGG  V  S
Sbjct: 242 IVAVTEQAPAERCEALEAAGVEVVRAGKGAHVDLRALMQMLGQREICSVFVEGGGRVNFS 301

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
            + + LVD +  + +  +IG     +P+E         CV 
Sbjct: 302 LLRAGLVDKVYAFIAPKLIGGSEALTPVEGEGFAALKDCVE 342


>gi|254361993|ref|ZP_04978124.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Mannheimia haemolytica PHL213]
 gi|153093540|gb|EDN74520.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Mannheimia haemolytica PHL213]
          Length = 359

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 120/354 (33%), Positives = 180/354 (50%), Gaps = 12/354 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ A+  +    G TS NP V C+IVK+G +I  G     G  HAE  A+    E+  GA
Sbjct: 1   MAYAITLAEKARGWTSPNPLVGCVIVKNGNIIAEGYHQKAGSWHAERNAILNCEEDLTGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPC H+GR+PPC++ +IE GI++V +   DP+  VSG+G   L   GI +V+  
Sbjct: 61  TAYVTLEPCCHHGRTPPCSELLIERGIKKVFIGSRDPNPLVSGKGAAQLRAAGIEVVEDF 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M +E       +      KR ++ LK  ++ D  I      S  ITG  ++  V   R +
Sbjct: 121 MRTECDALNPIFFHYIQTKRPYVLLKYGMTADGKIATYTGNSKWITGEAARANVQKSRHE 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
             AI+VG+ TVLADDP L  R+       P+RI+ D   +  LDS++++TA     II T
Sbjct: 181 YSAIMVGVETVLADDPMLNSRME--NAKQPVRIVCDSQLRTPLDSQLVQTARQYRTIIAT 238

Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
            N+D      +    + I+    R    DL  LL  L   G+ SLL+EGG+ +  S +  
Sbjct: 239 LNNDAKKQAEYTACGVEILVTGERDKRVDLADLLQKLGELGIDSLLIEGGSQLNFSVLEQ 298

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLEY 354
            LV+ +  Y +  +IG     +P+    + +    V+      +  G D+ L+Y
Sbjct: 299 GLVNRVHCYIAPKLIGGKAAKTPIGGKGIGELAQAVKLRLKSTELLGEDILLDY 352


>gi|196038826|ref|ZP_03106134.1| riboflavin biosynthesis protein RibD [Bacillus cereus NVH0597-99]
 gi|196030549|gb|EDX69148.1| riboflavin biosynthesis protein RibD [Bacillus cereus NVH0597-99]
          Length = 370

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/369 (34%), Positives = 189/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 3   DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC   +I+ GI RVV+   D +  VSG G + L + GI +
Sbjct: 63  AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+      +P+R+ILD H K    S +I   L    
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLKTPPSSHVITDGLAPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV  + +     ++  KNI I     +  +++ +L +L  + + SL VEGG  V  SF+
Sbjct: 242 IIVGTDVNQEKIASYESKNITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            ++  + II Y S  +IG    P+              +         G D+ +    +N
Sbjct: 302 QTKYFNEIITYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 361

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 362 EVTKCLQEL 370


>gi|229123633|ref|ZP_04252828.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus 95/8201]
 gi|228659768|gb|EEL15413.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus 95/8201]
          Length = 379

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 126/369 (34%), Positives = 190/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 12  DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC   +I+ GI RVV+   D +  VSG G + L + GI +
Sbjct: 72  AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+      +P+R+ILD H +    S +I  +L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDSLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV  + +     ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF+
Sbjct: 251 IIVGTDVNQEKIASYESENITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            ++  + I+ Y S  +IG    P+              +         G D+ +    +N
Sbjct: 311 QTKYFNEIVTYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTKCLQEL 379


>gi|229086682|ref|ZP_04218850.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-44]
 gi|228696629|gb|EEL49446.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-44]
          Length = 379

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 126/369 (34%), Positives = 192/369 (52%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV A+  AG++
Sbjct: 12  DQEYMNIALQLAESTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHAIHMAGDK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A G+T YVTLEPCSH+G++PPC   +IE  ++RVV+   D +  VSG G + L + GI +
Sbjct: 72  AYGSTVYVTLEPCSHFGKTPPCCDLLIEKRVKRVVIATLDCNPLVSGSGARRLQEAGISV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E       +      K   +T+K A+S D  I  +   S  ITG  +++ VH 
Sbjct: 132 TTGVLEEEATTLNRYFFHYMKTKLPFVTIKTAMSLDGKIATSTGESKWITGEDARDDVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT RL       P+RIILD H +  L S II   +    
Sbjct: 192 YRHTHDAILVGVNTVIADNPSLTTRLPNG-GKHPIRIILDTHLRTPLSSHIITDGIAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ D      +  + I++     +  ++++ L++L  + + SL VEGG +V  SF+
Sbjct: 251 IIVGKDVDKGKITTYESQGISVFQMKTKQIEIREFLSLLGEKQILSLFVEGGQSVHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            ++  + I+ Y S  +IG    P+        K     +         G D+ +    +N
Sbjct: 311 EAKCFNEIVTYISPKLIGGKDAPTMFGGTGFNKLQHAISLQIQEMKQIGDDIKIVATVRN 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVPACLQEL 379


>gi|300855387|ref|YP_003780371.1| riboflavin biosynthesis protein RibD [Clostridium ljungdahlii DSM
           13528]
 gi|300435502|gb|ADK15269.1| riboflavin biosynthesis protein RibD [Clostridium ljungdahlii DSM
           13528]
          Length = 372

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 132/370 (35%), Positives = 207/370 (55%), Gaps = 12/370 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M   + D ++M  AL+ +    G  + NP V  +IVK+G +IG+G   + G  HAEV AL
Sbjct: 1   MEKENTDEKYMKEALKLALLGKGFVNPNPLVGAVIVKNGKIIGKGYHRFFGGAHAEVYAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAG+ A+GA  YVTLEPCSHYG++PPCA+ I+E GI++VV+   DP+  VSGRG++ L 
Sbjct: 61  REAGDNAQGADLYVTLEPCSHYGKTPPCAKAIVEAGIKKVVIGSVDPNPLVSGRGVKILR 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
            + I +V  +ME E       +++    K   + LK  V+ D  I      S  ITG  S
Sbjct: 121 DENIEVVTGVMEREAVKINEIFMSYIKSKLPFVILKSGVTLDGKIATVSGESKWITGEKS 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           + +VH +R +  AI+VG+GTV+ DDP LT RL   +  SP  +I+D   ++ ++S+I KT
Sbjct: 181 RLKVHKMRNRVMAIMVGVGTVILDDPLLTTRLEE-KCKSPKAVIVDSKLRVPVESQIFKT 239

Query: 240 ALLAPVII-VTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVE 293
           +    +II  TE  D V A + +   +NI+ C        DLK L   L   G+ S+LVE
Sbjct: 240 SREREIIIACTEKFDKVKAESLKAMGVNIVVCTENKEGRVDLKYLTKKLGEMGIDSVLVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           GG+ +  S + S +V+ +I + +  ++G     + +E   +      ++      D+C E
Sbjct: 300 GGSELNFSALKSGIVNKVIYFIAPKILGGKNAKTSVEGYGIGNLSDSIKLK----DICAE 355

Query: 354 YIGKNLCLQE 363
            +G+++ +Q 
Sbjct: 356 NVGEDIMIQA 365


>gi|296133286|ref|YP_003640533.1| riboflavin biosynthesis protein RibD [Thermincola sp. JR]
 gi|296031864|gb|ADG82632.1| riboflavin biosynthesis protein RibD [Thermincola potens JR]
          Length = 385

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 145/366 (39%), Positives = 203/366 (55%), Gaps = 11/366 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   D ++M  AL  +    G TS NP V  +IVKDG VIG+G     G PHAEV AL E
Sbjct: 1   MIKTDVKYMRMALELAAKARGNTSPNPMVGAVIVKDGRVIGKGYHMKAGTPHAEVHALRE 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE +RGAT YVTLEPCSHYGR+PPC++ +I  G+ RVVV ++DP+  VSG+G+Q + + 
Sbjct: 61  AGELSRGATMYVTLEPCSHYGRTPPCSKAVIAAGVARVVVAMEDPNPLVSGQGIQQMREA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   +ME E +     ++     +R  + +K A++ D  I  A   S  ITG  ++ 
Sbjct: 121 GIQVEVGLMEKEARELNEVFIKYIKTRRPFVVMKSAMTLDGKIATATGHSRWITGEEARR 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VHL R+  DAILVGIGTVL D+P LTCRL   Q  +P+RIILD   +L +D  ++KT  
Sbjct: 181 LVHLWRSWYDAILVGIGTVLTDNPLLTCRLEDRQAQNPVRIILDSLGRLPVDVNVLKTIE 240

Query: 242 LAPVIIVTENDDP-VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
            APVI+V+    P        K    ++    R    DL  LL  L  R +TSL VEGGA
Sbjct: 241 QAPVIVVSTEKIPRERKAVLEKLGAEVLVLPEREGRPDLAALLDELGRREITSLFVEGGA 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVC 351
            V  SF+ +RL D  + + +  ++G    P P+ +  ++      N   +     G D+ 
Sbjct: 301 TVNASFLKNRLADKTVWFVAPKIVGGPQAPGPVGDMGIQFMDECLNIKNMSVQDIGPDLL 360

Query: 352 LEYIGK 357
           +     
Sbjct: 361 ITGYPD 366


>gi|83589766|ref|YP_429775.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Moorella thermoacetica ATCC 39073]
 gi|83572680|gb|ABC19232.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Moorella
           thermoacetica ATCC 39073]
          Length = 376

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 141/374 (37%), Positives = 204/374 (54%), Gaps = 15/374 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   DA FM+ AL  +R  +G TS NP+V  +IV+DG V+G G     G PHAE+ AL  
Sbjct: 1   MQPQDAIFMARALELARQGLGRTSPNPTVGAVIVRDGQVVGEGYHQKAGTPHAEIHALRA 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE+ARGAT YVTLEPC HYGR+PPC + II  GI+RVV  + DP+ RV+G G + LSQ 
Sbjct: 61  AGEKARGATLYVTLEPCCHYGRTPPCTEAIIAAGIKRVVAAMADPNPRVAGGGFRALSQA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++  E +    A++      R  +TLK+A++ D  I      +  ITG  ++ 
Sbjct: 121 GIEVETGLLADEARRLNEAFIKYITTGRPWVTLKMALTLDGKIATRTGAARWITGPAARQ 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           + H LR   DAILVGIGTVLADDPELT RL   +    +R+ILD H +L L ++++    
Sbjct: 181 RAHELRDIHDAILVGIGTVLADDPELTTRLPDGRGRDAIRVILDSHLRLPLSARVVNLQS 240

Query: 242 LAPVIIVTENDDPVLALA-FRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGA 296
            AP ++VT    P  A      + + ++     D     + LL  L  R VTS+LVEGGA
Sbjct: 241 EAPTLVVTTPSAPAAARENLAARGVEVLVLPEEDGRVAWQPLLAELARRQVTSILVEGGA 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVC 351
            V  + + + +VD ++ + +  + G    P+P+    +           +  +  G D+ 
Sbjct: 301 EVNATALAAGIVDKVVAFIAPKIFGGREAPAPVGGLGVADPATAWKLEKLAVERCGEDIM 360

Query: 352 LEY----IGKNLCL 361
           L       G+  CL
Sbjct: 361 LSGYLLKRGEEPCL 374


>gi|317497909|ref|ZP_07956219.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316894890|gb|EFV17062.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 366

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 122/356 (34%), Positives = 184/356 (51%), Gaps = 12/356 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M  A+  ++   G T+ NP V  +IVKD  VIG G     G  HAE  AL+   E+ 
Sbjct: 3   EEYMRRAIELAKKGCGYTNPNPLVGAVIVKDQKVIGEGYHEKIGGLHAERNALKNCIEDP 62

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           +GA  YVTLEPC HYG++PPC + +IE GI++V V   DP+ +V+G G++ L+  GI  +
Sbjct: 63  KGAEIYVTLEPCCHYGKTPPCTEALIEAGIKKVYVGNLDPNPKVAGGGIKILNDHGIETE 122

Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++E E +     +         +  LK A++ D  I  A   S  ITG  ++  VH L
Sbjct: 123 TGILEEECRQLNDIFFHYIQNDIPYTALKYAMTLDGKIATATGESKWITGEEARRHVHTL 182

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R Q  AI+ GIGTVLADDP L  R+     + P+R+I D + ++S  S I+KTA   P I
Sbjct: 183 RHQYAAIMAGIGTVLADDPMLNARIEH--GNDPIRVICDSNLRISEGSNIVKTAREIPTI 240

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           I T + D        +K   I+    +D    +K++L  L    + S+LVEGG  +  S 
Sbjct: 241 IATISKDQEKIAKLEQKGCKILKTSEQDGKVNVKEVLKQLRNMEIDSVLVEGGGILNESL 300

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
           I +  V  +  Y +  + G     +P+E   +E+      F  ++    G+D+ LE
Sbjct: 301 IKNDCVHKVYAYIAPKLFGGEKAKTPVEGKGIERIQEALVFDELKATPLGNDILLE 356


>gi|253681051|ref|ZP_04861854.1| riboflavin biosynthesis protein RibD [Clostridium botulinum D str.
           1873]
 gi|253562900|gb|EES92346.1| riboflavin biosynthesis protein RibD [Clostridium botulinum D str.
           1873]
          Length = 372

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 126/372 (33%), Positives = 194/372 (52%), Gaps = 14/372 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M  A+  S+  +G T  NP V  +IVKD  +IG G     G  HAE+ AL+ A E
Sbjct: 1   MDLSYMKRAIELSKLGIGYTYPNPLVGAIIVKDNKIIGEGYHKRFGENHAEINALKNAKE 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +  GAT YVTLEPCSHYG++PPC   II+ GI++V++ + DP+  V+GRG + L   GI 
Sbjct: 61  DVSGATMYVTLEPCSHYGKTPPCVNAIIKSGIKKVIIGMSDPNPLVAGRGTRILKDNGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V+ +++ E K     ++     K     LK A++ D  I      S  I+  +S+  VH
Sbjct: 121 VVEGILKEEVKKVNEIFIKYITTKLPFCILKTAMTLDGKIATRDGDSKWISNEVSRQYVH 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            +R +   I+VGIGT++ D+P LT R+   +     RII+D   ++ +++K++     A 
Sbjct: 181 EIRHKVAGIMVGIGTIIKDNPSLTTRIINKKGRDSTRIIVDSKGRIPIEAKVLNLESQAK 240

Query: 245 VIIVTEN-DDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVA 299
            IIVT    +       R K   +I         DLK L+  L  R + S+L+EGGA + 
Sbjct: 241 TIIVTTELANREKIEVIRDKGAEVIITPLCDNRVDLKYLMEELGKRNIDSILLEGGAELN 300

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE- 353
           +S +N  +VD +I + S  +IG     +P+E           N   ++   F  D+ +E 
Sbjct: 301 YSVLNKGIVDKVISFISPKIIGGKEAKTPVEGLGKSTISEGINLENIKVSRFQEDIVIEG 360

Query: 354 YIG--KNLCLQE 363
           YI   + LC QE
Sbjct: 361 YIKGEEKLCSQE 372


>gi|229093172|ref|ZP_04224290.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-42]
 gi|228690146|gb|EEL43940.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-42]
          Length = 379

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 127/369 (34%), Positives = 190/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 12  DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC   +I+ GI RVV+   D +  VSG G + L + GI +
Sbjct: 72  AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+      +P+R+ILD H +    S +I  +L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDSLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV  + +     ++  KNI I     +  +++ +L +L  + + SL VEGG  V  SF+
Sbjct: 251 IIVGTDVNQEKIASYESKNIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            ++  + I+ Y S  +IG    P+              +         G D+ +    +N
Sbjct: 311 QTKYFNEIVTYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTKCLQEL 379


>gi|223041905|ref|ZP_03612090.1| riboflavin biosynthesis protein [Actinobacillus minor 202]
 gi|223017259|gb|EEF15686.1| riboflavin biosynthesis protein [Actinobacillus minor 202]
          Length = 364

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 115/363 (31%), Positives = 189/363 (52%), Gaps = 14/363 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++ FD  +M+ A+  +    G T+ NP V C+IVK+  ++  G     G  HAE  A+  
Sbjct: 1   MTDFD--YMARAIALAEKARGWTNPNPLVGCVIVKNDEILAEGYHERIGGWHAERNAILN 58

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           +  + RGATAYVTLEPC H+GR+PPC+  +IE GI +V +   DP+  VSG+G++ L   
Sbjct: 59  SSADLRGATAYVTLEPCCHHGRTPPCSDLLIERGISKVFIGSRDPNPLVSGKGVKQLQDA 118

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +V   M  E       +      KR ++ LK A++ D  I  +   S  ITG +++ 
Sbjct: 119 GIEVVTDFMREECDRLNPIFFHYIQTKRPYVLLKYAMTADGKIATSTGESKWITGELARA 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +V   R Q  AI+VG+ TVLAD+P L  R+       P+RI+ D   +  LD ++++TA 
Sbjct: 179 KVQETRHQYSAIMVGVETVLADNPMLNSRMP--NAKQPVRIVCDSSLRTPLDCQLVQTAK 236

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
               II T +DD      F+   ++++ C  +    DL+ LL  L    + SLL+EGG++
Sbjct: 237 EYRTIIATVSDDLQKIAQFQPLGVDVLVCKAKDKRVDLQDLLQKLGEMQIDSLLLEGGSS 296

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352
           +  S + + +V+ +  Y +  ++G     +P+    +              +  G D+ L
Sbjct: 297 LNFSALQAGVVNRVHCYIAPKLVGGETAKTPIGGEGIGVLSQAVKLQLQSTELIGEDILL 356

Query: 353 EYI 355
           +Y+
Sbjct: 357 DYV 359


>gi|229104716|ref|ZP_04235378.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-28]
 gi|228678780|gb|EEL32995.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-28]
          Length = 379

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/369 (34%), Positives = 194/369 (52%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE+
Sbjct: 12  DQEYMRIALQLAKGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++R+V+   D +  VSG G + L + GI +
Sbjct: 72  AKNATVYVTLEPCSHFGKTPPCCELLIEKGVKRIVIATLDCNPLVSGNGKKKLEEAGIKV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLETEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+    +HS +R+ILD H +    S II   L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKHS-IRVILDTHLRTPPSSHIITNTLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +     ++  KNI I     +  +++ +L +L  + + SL +EGG  V  SF+
Sbjct: 251 IIVGKDVNKEKIASYESKNIAIFQMKTKQIEIQDVLDLLGEKQILSLFIEGGQTVHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG  G P+        K     +         G D+ +    +N
Sbjct: 311 QTNNFNEIVTYISPKLIGGKGAPTLFGGNGFSKLQDSLSLKIQEMKQIGDDIKIVATARN 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTKCLQEL 379


>gi|322514846|ref|ZP_08067864.1| riboflavin biosynthesis protein RibD [Actinobacillus ureae ATCC
           25976]
 gi|322119150|gb|EFX91295.1| riboflavin biosynthesis protein RibD [Actinobacillus ureae ATCC
           25976]
          Length = 361

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 115/362 (31%), Positives = 193/362 (53%), Gaps = 14/362 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++  D  +M  A+  ++  +G T+ NP V C+IVK+G ++  G     G  HAE  A+  
Sbjct: 1   MTDLD--YMRRAIVLAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAILH 58

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
             E+   ATAYVTLEPC H+GR+PPC+  +IE GI++V +   DP+  V+GRG   L Q 
Sbjct: 59  CKEDLSEATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGASQLRQA 118

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +V+ +++ E       +      KR ++ +K A++ D  I  +   S  ITG  ++ 
Sbjct: 119 GVEVVEGLLKDECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATSTGESKWITGESARA 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +V   R Q  AI+VG+ TVLAD+P L  R+  +    P+RI+ D   +  LD ++++TA 
Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNV--KQPVRIVCDSQLRTPLDCQLVQTAK 236

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
               +I T +DD      FR   + ++ C  R    DL+ LL  L    + SLL+EGG++
Sbjct: 237 EYRTVIATVSDDLQKIEQFRPPGVEVLVCKARNKRVDLQDLLQKLGDMQIDSLLLEGGSS 296

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352
           +  S + S +V+ +  Y +  ++G     +P+    +++    V+      +  G D+ L
Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356

Query: 353 EY 354
           +Y
Sbjct: 357 DY 358


>gi|229157695|ref|ZP_04285770.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus ATCC 4342]
 gi|228625652|gb|EEK82404.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus ATCC 4342]
          Length = 379

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 192/369 (52%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE+
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC   +++ G++RVV+   D +  VSG G + L + GI +
Sbjct: 72  AKGATLYVTLEPCSHFGKTPPCCDLLLKKGVKRVVIATLDCNPLVSGNGKRRLEEAGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTVVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEDARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+      +P+R+ILD H +    S +I   L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDGLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +P    ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF+
Sbjct: 251 IIVGKDVNPEKIASYESENITIFQIKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            ++  + I+ Y S  +IG    P+              +         G D+ +    ++
Sbjct: 311 QTKHFNEIVTYISPKLIGGSNAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVANARS 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTECLQEL 379


>gi|327440271|dbj|BAK16636.1| pyrimidine deaminase [Solibacillus silvestris StLB046]
          Length = 371

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 126/362 (34%), Positives = 191/362 (52%), Gaps = 11/362 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  +    G T+ NP V  +IVKDG+++G G+    G PHAEV A+  AGE 
Sbjct: 4   DQDYMQLALELAASARGNTNPNPLVGAVIVKDGVIVGTGLHRKAGEPHAEVHAVNMAGEH 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            + AT YVTLEPCSHYG++PPCA+ + E G +RVVV  +DP+  V+GRG++ L   GI +
Sbjct: 64  TKDATIYVTLEPCSHYGKTPPCAKLLKESGFKRVVVATEDPNPEVAGRGIRLLRDAGIEV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +++ E +     ++   + +R  +  K A++ D  I      S  ITG  ++  VH 
Sbjct: 124 EVGVLQEEAQKLNERFIHNMLTERPFVVAKFAMTLDGKIATYNGHSQWITGEEARADVHE 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
           LR + D ILVG+ TVL D+P+LT RLN   Q  +P+R++LD   K  +D+ I  T     
Sbjct: 184 LRHEVDGILVGVQTVLNDNPKLTTRLNDDRQGRNPIRVVLDSTLKTPVDAHIADTTDART 243

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
           +I+ + + D   A    +  + II  D       ++ +L  L  +G+T LLVEGG  V  
Sbjct: 244 IIVTSLDSDEEKAQQLERNGVEIIRVDKEKTGLHIEDMLKALYKKGITHLLVEGGGNVNA 303

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           SF+    +D  I+Y +  V+G     +P     +E   L          + G D+ +   
Sbjct: 304 SFLRGGFIDQYIVYIAPKVLGGKNSITPFTGTDVETIDLANQLEFGEVTHVGEDLRIIAY 363

Query: 356 GK 357
            K
Sbjct: 364 PK 365


>gi|153814754|ref|ZP_01967422.1| hypothetical protein RUMTOR_00969 [Ruminococcus torques ATCC 27756]
 gi|145847785|gb|EDK24703.1| hypothetical protein RUMTOR_00969 [Ruminococcus torques ATCC 27756]
          Length = 395

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 121/374 (32%), Positives = 186/374 (49%), Gaps = 19/374 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A++ ++   G T+ NP V  +IVKDG +IG G     G  HAE  A+    E 
Sbjct: 23  DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGKIIGEGYHKKYGELHAERNAIASLTES 82

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GA  YVTLEPC H+G++PPC + IIE  IR+VV+   DP+ +V+G+G+Q L + G+ +
Sbjct: 83  AEGAVIYVTLEPCCHHGKTPPCTEAIIEQKIRKVVIGSRDPNPKVAGKGVQMLREAGVTV 142

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V+  M  E       +      K  ++ +K A++ D  I      S  ITG  ++ +V  
Sbjct: 143 VEDFMREECDQLNPVFFHYITTKTPYVVMKYAMTLDGKIATKTGASKWITGESARKEVQH 202

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +R Q   I+ GIGTVLADDP L  R+ G    SP+RI+ D   ++   S+I+K+A     
Sbjct: 203 MRHQYMGIMAGIGTVLADDPMLNVRVEGW--KSPVRIVCDSKLRIPPGSQIVKSAEKYRT 260

Query: 246 II--VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299
           I+    + +            +  IYC       DLKKL+  L  RG+ S+L+EGG  + 
Sbjct: 261 IVAYAEQKNAKEKIKILHTMGVETIYCPDEKNQIDLKKLMADLGNRGIDSILLEGGGTLN 320

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLEY 354
            S +   +V  +  + +  + G     +P+E   +E     V   Y      G D+ ++ 
Sbjct: 321 DSALRVGIVKEVQAFVAPKLFGGVAGKTPVEGIGVELPSEAVELKYTDICQIGEDIRIKC 380

Query: 355 -----IGKNLCLQE 363
                  +  CLQE
Sbjct: 381 QVCDKKQEESCLQE 394


>gi|126650091|ref|ZP_01722324.1| riboflavin specific deaminase [Bacillus sp. B14905]
 gi|126593263|gb|EAZ87225.1| riboflavin specific deaminase [Bacillus sp. B14905]
          Length = 375

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 117/366 (31%), Positives = 190/366 (51%), Gaps = 10/366 (2%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
            +++ D ++M  AL  +    G T+ NP V  +IVK+ I++G G+    G PHAEV A  
Sbjct: 5   TMTNKDEKYMQLALDLAASAKGNTNPNPLVGAVIVKNDIIVGTGLHRKAGEPHAEVHAFR 64

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AGE A+ AT YVTLEPCSH+G++PPCA  + E G+ RVVV + DP+  V+GRG+Q L  
Sbjct: 65  MAGEHAKNATLYVTLEPCSHFGKTPPCANLVKESGVSRVVVAMQDPNPTVAGRGIQLLRD 124

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +   ++E + +     ++   + KR  +  K A++ D  I      S  +TG  ++
Sbjct: 125 AGIAVEVGVLEQQARRLNERFIHNMLTKRPFVISKFAMTVDGKIATHTGHSKWVTGDAAR 184

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             VH +R + D ILVG+GTV+AD+P LT RL+     +P RII+D   +  LD+ +  T 
Sbjct: 185 EDVHHIRHEVDGILVGVGTVIADNPSLTTRLSEGYGKNPTRIIMDSLLRSPLDANVFNTE 244

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL----KKLLTILVGRGVTSLLVEGGA 296
               +++ +         +F  K + ++  +  +L     ++L  L   G+T +L+EGG+
Sbjct: 245 EAPTILVCSNEVSQEKVDSFTDKGLTVLPIEKNELGLNIDEMLARLYEHGITDILLEGGS 304

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVC 351
            V  SF+    +D  ++Y +  V+G     +P             +      D  G D+ 
Sbjct: 305 KVNASFLQQGAIDKYVIYVAPKVLGGNLSLTPFAGDNPSFMNEAWDIEFASFDKIGEDLR 364

Query: 352 LEYIGK 357
           +    K
Sbjct: 365 IIAYPK 370


>gi|218283800|ref|ZP_03489723.1| hypothetical protein EUBIFOR_02317 [Eubacterium biforme DSM 3989]
 gi|218215606|gb|EEC89144.1| hypothetical protein EUBIFOR_02317 [Eubacterium biforme DSM 3989]
          Length = 389

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 121/374 (32%), Positives = 189/374 (50%), Gaps = 19/374 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A++ ++   G T+ NP V  +IVKDG +IG G     G  HAE  A+    E 
Sbjct: 17  DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGRIIGEGYHKKYGELHAERNAIASLTES 76

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GA  YVTLEPC H+G++PPC + IIE  I++VV+   DP+ +V+G+G+Q L + G+ +
Sbjct: 77  AEGAVIYVTLEPCCHHGKTPPCTEAIIEQKIKKVVIGSRDPNPKVAGKGVQMLRKAGVTV 136

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V+  M  E       +      K  ++ +K A++ D  I      S  IT   S+ +V  
Sbjct: 137 VEDFMGEECDRLNPVFFHYITMKTPYVVMKYAMTLDGKIATKTGASKWITSLASRKEVQH 196

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +R Q   I+VGIGTVL DDP L  R+ G    SP+RI+ D   ++ LDS+I+K+A     
Sbjct: 197 MRHQYMGIMVGIGTVLEDDPMLNVRVEGW--KSPVRIVCDSKLRIQLDSQIVKSAKKYRT 254

Query: 246 II--VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299
           I+    + +          + +  IYC       DLK+L+  L  RG+ S+L+EGG  + 
Sbjct: 255 IVAYADQKNTGEKIKILHTRGVETIYCPDEKNQIDLKRLMIDLGNRGIDSILLEGGGTLN 314

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCL-- 352
            S + + +V  +  + +  + G     +P+E   ++     V   Y      G D+ +  
Sbjct: 315 DSALRAGIVKEVQAFVAPKLFGGVAGKTPVEGVGVKFPSEAVELKYTDICQIGQDIRIRC 374

Query: 353 ---EYIGKNLCLQE 363
              E   +  CLQE
Sbjct: 375 QVCEKKQEESCLQE 388


>gi|238925477|ref|YP_002938994.1| riboflavin biosynthesis protein [Eubacterium rectale ATCC 33656]
 gi|238877153|gb|ACR76860.1| riboflavin biosynthesis protein [Eubacterium rectale ATCC 33656]
          Length = 394

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 127/382 (33%), Positives = 189/382 (49%), Gaps = 37/382 (9%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M  A+  ++  +G TS NP V  +IVKDG +IG G     G  HAE  AL+   E 
Sbjct: 9   DEQYMRRAIELAKRGMGYTSPNPMVGAVIVKDGRIIGEGWHERYGELHAERNALKHCKES 68

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            +GA  YVTLEPC H+G+ PPC + +IE GI+RV V  DDP+  V+G G++ L + GI +
Sbjct: 69  PQGADMYVTLEPCCHHGKQPPCVEAVIEAGIKRVYVGSDDPNPLVAGGGIKILKEHGIEV 128

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V ++++ E       +      +R ++ +K A++ D  I      S  ITG  ++  V  
Sbjct: 129 VTQVLKDECDRLNDVFFYFIQTRRPYVAMKYAMTMDGKIATYSGLSKWITGEKAREHVQN 188

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR +  AI+ GIGTVLADDP LTCR+ G    +P+RII D H KL L+S+I+ TA   P 
Sbjct: 189 LRHRYKAIMAGIGTVLADDPLLTCRIEG--GVNPIRIICDTHLKLPLESQIVNTAKEVPT 246

Query: 246 IIV----------------TENDDPV---------LALAFRKKNINIIYCDCR----DLK 276
           I+                 TE D                  +  I I+Y   +    DL 
Sbjct: 247 IVAVSERYHETAQSEALPDTEKDSIEENNNYQKNRKITRLEENGIEILYVAEKNGHIDLN 306

Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
            L+  L  R + S+L+EGG  +  S + S +V+ +  Y +  + G     +P+E    + 
Sbjct: 307 DLMQKLGERSIDSILLEGGGILNWSALKSGIVNKVYAYIAPKLFGGADAKTPIEGMGTDS 366

Query: 337 NFMCV-----RRDYFGSDVCLE 353
               V     +    G D  +E
Sbjct: 367 PAHAVMLGNSKVTKLGDDFLIE 388


>gi|291524228|emb|CBK89815.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Eubacterium rectale DSM 17629]
          Length = 386

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 127/382 (33%), Positives = 189/382 (49%), Gaps = 37/382 (9%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M  A+  ++  +G TS NP V  +IVKDG +IG G     G  HAE  AL+   E 
Sbjct: 3   DEQYMRRAIELAKRGMGYTSPNPMVGAVIVKDGRIIGEGWHERYGELHAERNALKHCKES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            +GA  YVTLEPC H+G+ PPC + +IE GI+RV V  DDP+  V+G G++ L + GI +
Sbjct: 63  PQGADMYVTLEPCCHHGKQPPCVEAVIEAGIKRVYVGSDDPNPLVAGGGIKILKEHGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V ++++ E       +      +R ++ +K A++ D  I      S  ITG  ++  V  
Sbjct: 123 VTQVLKDECDRLNDVFFYFIQTRRPYVAMKYAMTMDGKIATYSGLSKWITGEKAREHVQN 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR +  AI+ GIGTVLADDP LTCR+ G    +P+RII D H KL L+S+I+ TA   P 
Sbjct: 183 LRHRYKAIMAGIGTVLADDPLLTCRIEG--GVNPIRIICDTHLKLPLESQIVNTAKEVPT 240

Query: 246 IIV----------------TENDDPV---------LALAFRKKNINIIYCDCR----DLK 276
           I+                 TE D                  +  I I+Y   +    DL 
Sbjct: 241 IVAVSERYRETAHSEALPDTEKDSIEENNNYQKNRKITRLEENGIEILYVAEKNGHIDLN 300

Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
            L+  L  R + S+L+EGG  +  S + S +V+ +  Y +  + G     +P+E    + 
Sbjct: 301 DLMQKLGERNIDSILLEGGGILNWSALKSGIVNKVYAYIAPKLFGGADAKTPIEGMGTDS 360

Query: 337 NFMCV-----RRDYFGSDVCLE 353
               V     +    G D  +E
Sbjct: 361 PAHAVMLGNSKVTKLGDDFLIE 382


>gi|222085509|ref|YP_002544039.1| 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidine
           deaminase protein [Agrobacterium radiobacter K84]
 gi|221722957|gb|ACM26113.1| 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidine
           deaminase protein [Agrobacterium radiobacter K84]
          Length = 371

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 191/367 (52%), Positives = 247/367 (67%), Gaps = 11/367 (2%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M     D RFM+AA+R SRWH+GLTSTNPSV C+IVKDG VIGRGVTA GG PHAE QAL
Sbjct: 3   MTRRPDDERFMAAAIRLSRWHLGLTSTNPSVGCVIVKDGAVIGRGVTAVGGRPHAETQAL 62

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AGE ARGATAYVTLEPCSHYG++PPC++ +I  G+ RVV+ V DPD RVSGRG+  L 
Sbjct: 63  ADAGEAARGATAYVTLEPCSHYGKTPPCSEALIAYGVARVVISVTDPDQRVSGRGIAMLR 122

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI VD  ++E EG+  L  YL RQ   R ++TLK+AVS D MIG  G G V ITG ++
Sbjct: 123 DAGIEVDIGILEEEGRHSLAGYLMRQTRNRPYVTLKLAVSTDGMIGKTGTGQVRITGDVA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           + QV ++RA+SDAILVGIGT +ADDPELTCRL GL++ +P+RI++D   +L L SK++KT
Sbjct: 183 RAQVQVVRAESDAILVGIGTAIADDPELTCRLPGLEDRTPLRIVIDDQLQLPLGSKLVKT 242

Query: 240 ALLAPVIIVTENDDP----------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
           A   PVI V  +  P              A     + ++  +  +  +LL  L  RG++S
Sbjct: 243 ARQYPVITVAGHPPPFDENTDKALMARRAALDDAGVEVLQSNSNEPGELLEALGTRGISS 302

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           LLVEGGA VA  F+++ LVD I+L++    IGEGGI SP+ +  +  +F  +R   FG D
Sbjct: 303 LLVEGGARVAQRFLDADLVDRILLFQGPDAIGEGGIESPVTKTNIPPSFRHIRASQFGDD 362

Query: 350 VCLEYIG 356
            C E+  
Sbjct: 363 RCDEFER 369


>gi|226324277|ref|ZP_03799795.1| hypothetical protein COPCOM_02056 [Coprococcus comes ATCC 27758]
 gi|225206725|gb|EEG89079.1| hypothetical protein COPCOM_02056 [Coprococcus comes ATCC 27758]
          Length = 370

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 116/364 (31%), Positives = 181/364 (49%), Gaps = 18/364 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++   G T+ NP V  +IVKDG +IG G     G  HAE  A+    E 
Sbjct: 3   DEFYMRRAIELAKKGRGWTNPNPMVGAVIVKDGSIIGEGYHEKCGELHAERNAIASLTES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GAT YVTLEPC HYG++PPC + I+E  I RVV+   DP+ +VSG+G + L + G+ +
Sbjct: 63  AEGATLYVTLEPCCHYGKTPPCTEAILEQKIARVVIGSRDPNPKVSGKGAKILREAGVRV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
            +  +  E       +         ++ +K A++ D  I      S  I+G  +++ VH 
Sbjct: 123 EEDFLREECDALNPVFFHYITTGLPYVVMKYAMTADGKIATKTGASKWISGEEARSLVHE 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +R    AI+ GIGTVLADDP L  RL G  + SP+RII D   ++ LDS+I +TA     
Sbjct: 183 MRHDYMAIMAGIGTVLADDPMLNVRLEG--KKSPVRIICDSMLRIPLDSQICQTAGRYRT 240

Query: 246 IIVTENDD------PVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295
           I+    +            +  K  + ++         +L+ L+  L   G+ S+L+EGG
Sbjct: 241 IVAYAGEKGNAICLEEKKHSLEKLGVVLLSVPSEKGEINLQLLMRKLGELGIDSVLIEGG 300

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDV 350
             +    + S +V+ +  + +  + G  G  +P+E   +EK         +R    G D+
Sbjct: 301 GTLNEDALQSGIVNEVKAFIAPKIFGGRGGKTPVEGFGVEKVDDAIKLQLMRISQVGEDI 360

Query: 351 CLEY 354
             EY
Sbjct: 361 LAEY 364


>gi|218698677|ref|YP_002406306.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli IAI39]
 gi|218368663|emb|CAR16402.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli IAI39]
          Length = 367

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 186/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             DD        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQDDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|52141386|ref|YP_085445.1| riboflavin biosynthesis protein [Bacillus cereus E33L]
 gi|51974855|gb|AAU16405.1| riboflavin biosynthesis protein [Bacillus cereus E33L]
          Length = 370

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 127/369 (34%), Positives = 189/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 3   DQEYMRIALQLAEGTCGQTSPNPMVGAIVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC   +I+ GI RVV+   D +  VSG G + L + GI +
Sbjct: 63  AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+      +P+R+ILD H +    S +I   L    
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDGLAPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV  + +     ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF+
Sbjct: 242 IIVGRDVNKEKIASYESENITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            ++  + II Y S  +IG    P+              +         G D+ +    +N
Sbjct: 302 QTKYFNEIITYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 361

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 362 EVTKCLQEL 370


>gi|291527733|emb|CBK93319.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Eubacterium rectale M104/1]
          Length = 388

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 127/382 (33%), Positives = 189/382 (49%), Gaps = 37/382 (9%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M  A+  ++  +G TS NP V  +IVKDG +IG G     G  HAE  AL+   E 
Sbjct: 3   DEQYMRRAIELAKRGMGYTSPNPMVGAVIVKDGRIIGEGWHERYGELHAERNALKHCKES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            +GA  YVTLEPC H+G+ PPC + +IE GI+RV V  DDP+  V+G G++ L + GI +
Sbjct: 63  PQGAEMYVTLEPCCHHGKQPPCVEAVIEAGIKRVYVGSDDPNPLVAGGGIKILKEHGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V ++++ E       +      +R ++ +K A++ D  I      S  ITG  ++  V  
Sbjct: 123 VTQVLKDECDRLNEVFFYFIQTRRPYVAMKYAMTMDGKIATYSGLSKWITGEKAREHVQN 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR +  AI+ GIGTVLADDP LTCR+ G    +P+RII D H KL L+S+I+ TA   P 
Sbjct: 183 LRHRYKAIMAGIGTVLADDPLLTCRIEG--GVNPIRIICDTHLKLPLESQIVNTAKEVPT 240

Query: 246 IIV----------------TENDDPV---------LALAFRKKNINIIYCDCR----DLK 276
           I+                 TE D                  +  I I+Y   +    DL 
Sbjct: 241 IVAVSERYRETAHSEALPDTEKDSIEENNNYQKNRKITRLEENGIEILYVAEKNGHIDLN 300

Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
            L+  L  R + S+L+EGG  +  S + S +V+ +  Y +  + G     +P+E    + 
Sbjct: 301 DLMQKLGERSIDSILLEGGGILNWSALKSGIVNKVYAYIAPKLFGGADAKTPIEGMGTDS 360

Query: 337 NFMCV-----RRDYFGSDVCLE 353
               V     +    G D  +E
Sbjct: 361 PAHAVMLGNSKVTKLGDDFLIE 382


>gi|215485495|ref|YP_002327926.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli O127:H6 str. E2348/69]
 gi|312964564|ref|ZP_07778820.1| riboflavin biosynthesis protein RibD [Escherichia coli 2362-75]
 gi|215263567|emb|CAS07897.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|312290798|gb|EFR18675.1| riboflavin biosynthesis protein RibD [Escherichia coli 2362-75]
          Length = 367

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 187/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +   + +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNNGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             DD        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQDDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCLLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|49480339|ref|YP_038170.1| riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49331895|gb|AAT62541.1| riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 370

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 190/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 3   DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC   +I+ GI RVV+   D +  VSG G + L + GI +
Sbjct: 63  AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+      +P+R+ILD H +    S +I  +L    
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDSLAPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           I+V  + +     ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF+
Sbjct: 242 IMVGRDVNKEKIASYESENITIFQMKTKQIEIQDILDLLGEKQILSLFVEGGQTVHASFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            ++  + I+ Y S  +IG    P+              +         G D+ +    +N
Sbjct: 302 QTKYFNEIVTYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 361

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 362 EVTKCLQEL 370


>gi|228929160|ref|ZP_04092187.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228947830|ref|ZP_04110117.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228811817|gb|EEM58151.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228830450|gb|EEM76060.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 379

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 191/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 12  DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +I+  ++RVV+   D +  VSG G + L + GI +
Sbjct: 72  AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+      +P+R+ILD H +    S +I  +L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDSLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV  + +     ++  KNI I     +  +++ +L +L  + + SL VEGG  V  SF+
Sbjct: 251 IIVGTDVNQEKIASYESKNIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            ++  + I+ Y S  +IG    P+              +         G D+ +    +N
Sbjct: 311 QTKYFNEIVTYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTKCLQEL 379


>gi|229098580|ref|ZP_04229521.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-29]
 gi|228684902|gb|EEL38839.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-29]
          Length = 379

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/369 (34%), Positives = 195/369 (52%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE+
Sbjct: 12  DQEYMRIALQLAKGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++R+V+   D +  VSG G + L + GI +
Sbjct: 72  AKNATVYVTLEPCSHFGKTPPCCELLIEKGVKRIVIATLDCNPLVSGNGKKKLEEAGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLETEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGAEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+    +HS +R+ILD H +    S +I  AL    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKHS-IRVILDTHLRTPPSSHVITDALAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +     ++  KNI I     +  +++ +L +L  + + SL +EGG  V  SF+
Sbjct: 251 IIVGKDVNKEKIASYESKNIAIFQMKTKQIEIQDVLDLLGEKQILSLFIEGGQTVHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG  G P+        K     +         G D+ +    +N
Sbjct: 311 QTNNFNEIVTYISPKLIGGKGAPTLFGGNGFSKLQDSLSLKIQEMKQIGDDIKIVATARN 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTKCLQEL 379


>gi|331088370|ref|ZP_08337289.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330408614|gb|EGG88080.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 375

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 121/374 (32%), Positives = 186/374 (49%), Gaps = 19/374 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A++ ++   G T+ NP V  +IVKDG +IG G     G  HAE  A+    E 
Sbjct: 3   DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGKIIGEGYHKKYGELHAERNAIASLTES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GA  YVTLEPC H+G++PPC + IIE  IR+VV+   DP+ +V+G+G+Q L + G+ +
Sbjct: 63  AEGAVIYVTLEPCCHHGKTPPCTEAIIEQKIRKVVIGSRDPNPKVAGKGVQMLREAGVTV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V+  M  E       +      K  ++ +K A++ D  I      S  ITG  ++ +V  
Sbjct: 123 VEDFMREECDQLNPVFFHYITTKTPYVVMKYAMTLDGKIATKTGASKWITGESARKEVQH 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +R Q   I+ GIGTVLADDP L  R+ G    SP+RI+ D   ++   S+I+K+A     
Sbjct: 183 MRHQYMGIMAGIGTVLADDPMLNVRVEGW--KSPVRIVCDSKLRIPPGSQIVKSAEKYRT 240

Query: 246 II--VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299
           I+    + +            +  IYC       DLKKL+  L  RG+ S+L+EGG  + 
Sbjct: 241 IVAYAEQKNAKEKIKILHTMGVETIYCPDEKNQIDLKKLMADLGNRGIDSILLEGGGTLN 300

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLEY 354
            S +   +V  +  + +  + G     +P+E   +E     V   Y      G D+ ++ 
Sbjct: 301 DSALRVGIVKEVQAFVAPKLFGGVAGKTPVEGIGVELPSEAVELKYTDICQIGEDIRIKC 360

Query: 355 -----IGKNLCLQE 363
                  +  CLQE
Sbjct: 361 QVCDKKQEESCLQE 374


>gi|169827319|ref|YP_001697477.1| riboflavin biosynthesis protein ribD [Lysinibacillus sphaericus
           C3-41]
 gi|168991807|gb|ACA39347.1| Riboflavin biosynthesis protein ribD [Lysinibacillus sphaericus
           C3-41]
          Length = 375

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 190/366 (51%), Gaps = 10/366 (2%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
            +++ D ++M  AL  +    G T+ NP V  +IVK+ I++G G+    G PHAEV A  
Sbjct: 5   TMTTKDEKYMQLALDLAASAKGNTNPNPLVGAVIVKNDIIVGTGLHRKAGEPHAEVHAFR 64

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AGE A+ AT YVTLEPCSH+G++PPCA  + + G+ RVVV + DP+  V+GRG+Q L  
Sbjct: 65  MAGEHAQNATLYVTLEPCSHFGKTPPCANLVKDSGVSRVVVAMQDPNPTVAGRGIQLLRD 124

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +   ++E + +     ++   + KR  I  K A++ D  I      S  +TG  ++
Sbjct: 125 AGITVEVGVLEQQARRLNERFIHNMLTKRPFIISKFAMTVDGKIATHTGHSKWVTGKAAR 184

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             VH +R + D ILVG+GTV+AD+P LT RL+     +P RII+D   +  LD+ ++ T 
Sbjct: 185 EDVHRIRHEVDGILVGVGTVIADNPSLTTRLSEGYGKNPTRIIMDSLLRTPLDANVLNTE 244

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGA 296
               +++ + +           K + ++  +      ++ ++L  L   G+T +L+EGG+
Sbjct: 245 EAPTILVCSNDVSQEKIDLLINKGLTVLPIEKDERGLNIDEMLARLYEHGITDILLEGGS 304

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVC 351
            V  SF+    +D  ++Y +  V+G     +P                    D  G D+C
Sbjct: 305 KVNASFLQQGAIDKYVIYIAPKVLGGNLSLTPFAGSNPSLMNEAWQVEFASFDKIGEDLC 364

Query: 352 LEYIGK 357
           +    K
Sbjct: 365 IIAYPK 370


>gi|302392186|ref|YP_003828006.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           ;5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Acetohalobium arabaticum DSM 5501]
 gi|302204263|gb|ADL12941.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           ;5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Acetohalobium arabaticum DSM 5501]
          Length = 371

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/368 (35%), Positives = 193/368 (52%), Gaps = 11/368 (2%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M   + D  +M  AL  +    G TS NP V  +IVKDG ++G+G     G PHAEV AL
Sbjct: 1   MADYNRDIDYMRLALDLAAKGRGRTSPNPMVGAVIVKDGEIVGQGYHHAAGKPHAEVNAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           ++A ++   AT YVTLEPCSHYG++PPC + +I  G+ RVV  + DP+ +V+GRGLQ L+
Sbjct: 61  QDAADKTEDATVYVTLEPCSHYGKTPPCTKALIGAGVSRVVAAMKDPNPKVAGRGLQKLA 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI +   ++E E K    A++     +R  + LK A++ D  I      S  I+G  S
Sbjct: 121 DAGIEVESGLLEEEAKELNEAFIKYITTERPFVILKNAMTLDGKIATKTGDSKWISGEES 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  VH LR + D ILVGIGTVL+D+P LT RL       P+RI+LD   ++ LDS ++  
Sbjct: 181 RRYVHRLRDEVDGILVGIGTVLSDNPRLTTRLPEQDGQDPIRIVLDSRLEIPLDSNLVTQ 240

Query: 240 ALLAPVII-VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294
              A  ++   E  D   A    +  + +I+   +    DL  LL  L    + SLLVEG
Sbjct: 241 ESEAKTVVAAAETADEEKAAKLEEAGVEVIFLPDKQGRIDLDSLLAELGRMEIMSLLVEG 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSD 349
           G+ +  SF+ + LVD I+ + +  +IG       +    ++K    +          G+D
Sbjct: 301 GSRINTSFLFTELVDKILYFIAPKLIGGSEAVQAVGGQGVDKVADGIELGDYELSTIGND 360

Query: 350 VCLEYIGK 357
           + +     
Sbjct: 361 ILIVGYPD 368


>gi|196248758|ref|ZP_03147458.1| riboflavin biosynthesis protein RibD [Geobacillus sp. G11MC16]
 gi|196211634|gb|EDY06393.1| riboflavin biosynthesis protein RibD [Geobacillus sp. G11MC16]
          Length = 366

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/354 (36%), Positives = 195/354 (55%), Gaps = 9/354 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  ++  VG TS NP+V  ++V DG ++G G     G PHAEV A+  AGE+
Sbjct: 4   DEHYMRLALDVAKAGVGQTSPNPAVGAVVVNDGTIVGIGAHLKAGEPHAEVHAIRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGAT YVTLEPCSHYG++PPCA  +IE G+RRVVV   DP+  V+G+G+  L + GI +
Sbjct: 64  ARGATVYVTLEPCSHYGKTPPCADLLIEAGVRRVVVATTDPNPLVAGKGINKLRRAGIDV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +++ E       +      K   +T+K A S D  I  A   S  IT   ++  VH 
Sbjct: 124 EVGILKEEADELNRMFFHYIATKTPFVTIKYACSLDGKIATATGESKWITSSAAREDVHR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ DAILVG+ TV+AD+P+LT R+ G Q  +P+R+ILD +    LD+ ++        
Sbjct: 184 LRAQHDAILVGVNTVMADNPKLTVRI-GQQRKNPLRVILDTNLHTPLDAHVVVDKEAETW 242

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           II         A  + +  + I+       D++++L +L  + +TSL VEGG+ +  SF+
Sbjct: 243 IITGSGVSREKAKMYERLGVRIVPMTSAHIDVREVLRLLGEQRITSLFVEGGSRIHDSFL 302

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCL 352
            S +V+ ++ Y +  +IG    P+P+      +    +  D       G D+ +
Sbjct: 303 RSGMVNEVVAYMAPKLIGGREAPTPVGGLGFSRLAEAMELDIRQIEKIGPDIKI 356


>gi|228935432|ref|ZP_04098250.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228824184|gb|EEM69998.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 379

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 123/369 (33%), Positives = 191/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 12  DQEYMRIALQLAEETCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +I+  ++RVV+   D +  VSG G + L + GI +
Sbjct: 72  AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+      +P+R+ILD + +    S +I  +L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTNLRTPPSSHVITDSLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           I+V  + +     ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF+
Sbjct: 251 IMVGRDVNKEKIASYESENITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            ++  + II Y S  +IG    P+              +         G D+ +    +N
Sbjct: 311 QTKYFNEIITYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTKCLQEL 379


>gi|320197148|gb|EFW71765.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-5-phosphoribosylaminouracil
           reductase [Escherichia coli WV_060327]
          Length = 367

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 186/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             DD        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQDDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|229075817|ref|ZP_04208794.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock4-18]
 gi|228707369|gb|EEL59565.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock4-18]
          Length = 379

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 128/369 (34%), Positives = 194/369 (52%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE+
Sbjct: 12  DQEYMRIALQLAKGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++R+V+   D +  VSG G + L + GI +
Sbjct: 72  AKNATVYVTLEPCSHFGKTPPCCELLIEKGVKRIVIATLDCNPLVSGNGKKKLEEAGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLETEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGAEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+    +HS +R+ILD H +    S +I   L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKHS-IRVILDTHLRTPPSSHVITDTLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +     ++  KNI I     +  +++ +L +L  + + SL +EGG  V  SF+
Sbjct: 251 IIVGKDVNKEKIASYESKNIAIFQMKTKQIEIQDVLDLLGEKQILSLFIEGGQTVHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG  G P+        K     +         G D+ +    +N
Sbjct: 311 QTNNFNEIVTYISPKLIGGKGAPTLFGGNGFSKLQDSLSLKIQEMKQIGDDIKIVATARN 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTKCLQEL 379


>gi|30264187|ref|NP_846564.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. Ames]
 gi|47529628|ref|YP_020977.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187016|ref|YP_030268.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           Sterne]
 gi|165871134|ref|ZP_02215784.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           A0488]
 gi|167633706|ref|ZP_02392030.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           A0442]
 gi|167639402|ref|ZP_02397673.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           A0193]
 gi|170687109|ref|ZP_02878327.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           A0465]
 gi|170705665|ref|ZP_02896128.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           A0389]
 gi|177652658|ref|ZP_02935074.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           A0174]
 gi|190566211|ref|ZP_03019130.1| riboflavin biosynthesis protein RibD [Bacillus anthracis
           Tsiankovskii-I]
 gi|196035025|ref|ZP_03102432.1| riboflavin biosynthesis protein RibD [Bacillus cereus W]
 gi|218905249|ref|YP_002453083.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH820]
 gi|227816888|ref|YP_002816897.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. CDC
           684]
 gi|229603428|ref|YP_002868410.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           A0248]
 gi|254683878|ref|ZP_05147738.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721713|ref|ZP_05183502.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           A1055]
 gi|254736225|ref|ZP_05193931.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           Western North America USA6153]
 gi|254744115|ref|ZP_05201798.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           Kruger B]
 gi|254754105|ref|ZP_05206140.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           Vollum]
 gi|254758204|ref|ZP_05210231.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           Australia 94]
 gi|30258832|gb|AAP28050.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. Ames]
 gi|47504776|gb|AAT33452.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49180943|gb|AAT56319.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           Sterne]
 gi|164713053|gb|EDR18580.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           A0488]
 gi|167512461|gb|EDR87836.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           A0193]
 gi|167531112|gb|EDR93799.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           A0442]
 gi|170129205|gb|EDS98069.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           A0389]
 gi|170668726|gb|EDT19471.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           A0465]
 gi|172081993|gb|EDT67061.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           A0174]
 gi|190563130|gb|EDV17096.1| riboflavin biosynthesis protein RibD [Bacillus anthracis
           Tsiankovskii-I]
 gi|195992564|gb|EDX56525.1| riboflavin biosynthesis protein RibD [Bacillus cereus W]
 gi|218537200|gb|ACK89598.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH820]
 gi|227005412|gb|ACP15155.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. CDC
           684]
 gi|229267836|gb|ACQ49473.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
           A0248]
          Length = 370

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 191/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 3   DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +I+  ++RVV+   D +  VSG G + L + GI +
Sbjct: 63  AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+      +P+R+ILD H +    S +I  +L    
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDSLAPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV  + +     ++  KNI I     +  +++ +L +L  + + SL VEGG  V  SF+
Sbjct: 242 IIVGTDVNQEKIASYESKNIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            ++  + I+ Y S  +IG    P+              +         G D+ +    +N
Sbjct: 302 QTKYFNEIVTYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 361

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 362 EVTKCLQEL 370


>gi|229140846|ref|ZP_04269391.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST26]
 gi|228642636|gb|EEK98922.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST26]
          Length = 379

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 123/369 (33%), Positives = 191/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +I+  ++RVV+   D +  VSG G + L + GI +
Sbjct: 72  AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKKRLEEAGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E  +    +      KR  +T+K A+S D         S  IT   ++  VH 
Sbjct: 132 TTGVLEEEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITSEDARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+      +P+R+ILD H +    S +I  +L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDSLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +P    ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF+
Sbjct: 251 IIVGKDVNPEKIASYESENIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            ++  + I+ Y S  +IG    P+              +         G D+ +    ++
Sbjct: 311 QTKYFNEIVTYISPKLIGGKNAPTLFGGNGFSTLQDALSLEIQEMKQVGDDIKIVAHARS 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVMECLQEL 379


>gi|164687268|ref|ZP_02211296.1| hypothetical protein CLOBAR_00909 [Clostridium bartlettii DSM
           16795]
 gi|164603692|gb|EDQ97157.1| hypothetical protein CLOBAR_00909 [Clostridium bartlettii DSM
           16795]
          Length = 370

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 117/357 (32%), Positives = 185/357 (51%), Gaps = 11/357 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  ++  +G  + NP V C+IVKDG VIG G     G PHAEV A+  A E+
Sbjct: 10  DNYYMKKALELAKLGIGAVNPNPLVGCIIVKDGKVIGEGYHMKFGEPHAEVNAINSAKED 69

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GAT YVTLEPCSH+G++PPCA  ++   ++RVV+C +DP+  V+G G++ L   GI +
Sbjct: 70  IEGATVYVTLEPCSHFGKTPPCADNLVRHKVKRVVICNNDPNPLVAGNGIKKLQNAGIEV 129

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E EG      +       +  +  K A+S D  I      S  I+    +   H 
Sbjct: 130 TTGILEEEGLKLNEVFFHYIKNNKPLVISKTAISMDGKIATKHMESQWISNESCREMTHE 189

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R +  AI+VGI TVL D+P LT R+   +  +P+RI++D + K+ ++S ++     +  
Sbjct: 190 YRNKYMAIMVGINTVLKDNPSLTSRIKNKKTRNPIRIVIDTNLKIPMNSNLVNDN-KSKT 248

Query: 246 IIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           II T N+D       ++K++++  C       DL  ++  L    + S+LVEGGA +  S
Sbjct: 249 IIFTCNNDLKKINLLKEKDVDVHICPKKEEGVDLNFVIEKLGELKIDSVLVEGGATLNDS 308

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
              + LVD + ++ +  +IG    PS +    +EK                SD+ +E
Sbjct: 309 LFRNNLVDKVKIFMAPKIIGGKDAPSFVSGCGIEKLSEATKLEIKNTTMIDSDILIE 365


>gi|91209482|ref|YP_539468.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli UTI89]
 gi|117622675|ref|YP_851588.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli APEC O1]
 gi|218557323|ref|YP_002390236.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli S88]
 gi|237707592|ref|ZP_04538073.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia
           sp. 3_2_53FAA]
 gi|91071056|gb|ABE05937.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Escherichia coli UTI89]
 gi|115511799|gb|ABI99873.1| bifunctional pyrimidine deaminase/reductase [Escherichia coli APEC
           O1]
 gi|218364092|emb|CAR01757.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli S88]
 gi|226898802|gb|EEH85061.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia
           sp. 3_2_53FAA]
 gi|294490690|gb|ADE89446.1| riboflavin biosynthesis protein RibD [Escherichia coli IHE3034]
 gi|315289871|gb|EFU49261.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 110-3]
 gi|323952974|gb|EGB48842.1| riboflavin biosynthesis protein RibD [Escherichia coli H252]
 gi|323958607|gb|EGB54310.1| riboflavin biosynthesis protein RibD [Escherichia coli H263]
          Length = 367

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 187/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEVQAL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVQALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|323178323|gb|EFZ63901.1| riboflavin biosynthesis protein RibD [Escherichia coli 1180]
          Length = 361

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 126/362 (34%), Positives = 183/362 (50%), Gaps = 18/362 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+A+GA
Sbjct: 1   MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI +   +
Sbjct: 61  TAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVSHGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V   RAQ
Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQRAQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKIIK 238
           S AIL    TVLADDP LT R + L E             P+RI++D   +++ + +I++
Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHRIVQ 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
                        +D        +  +   +    DL  L+  L  + + S+ VE G  +
Sbjct: 241 QPGE--TWFARTQEDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTL 298

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           A + + + LVD +I+Y +  ++G           LE+      F      + G DVCL  
Sbjct: 299 AGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHL 358

Query: 355 IG 356
           +G
Sbjct: 359 VG 360


>gi|217961603|ref|YP_002340173.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH187]
 gi|222097559|ref|YP_002531616.1| riboflavin biosynthesis protein ribd [Bacillus cereus Q1]
 gi|217063616|gb|ACJ77866.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH187]
 gi|221241617|gb|ACM14327.1| riboflavin biosynthesis protein RibD [Bacillus cereus Q1]
          Length = 370

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 123/369 (33%), Positives = 191/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 3   DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +I+  ++RVV+   D +  VSG G + L + GI +
Sbjct: 63  AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKKRLEEAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E  +    +      KR  +T+K A+S D         S  IT   ++  VH 
Sbjct: 123 TTGVLEEEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITSEDARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+      +P+R+ILD H +    S +I  +L    
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDSLAPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +P    ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF+
Sbjct: 242 IIVGKDVNPEKIASYESENIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            ++  + I+ Y S  +IG    P+              +         G D+ +    ++
Sbjct: 302 QTKYFNEIVTYISPKLIGGKNAPTLFGGNGFSTLQDALSLEIQEMKQVGDDIKIVAHARS 361

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 362 EVMECLQEL 370


>gi|206976286|ref|ZP_03237194.1| riboflavin biosynthesis protein RibD [Bacillus cereus H3081.97]
 gi|206745482|gb|EDZ56881.1| riboflavin biosynthesis protein RibD [Bacillus cereus H3081.97]
          Length = 370

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 123/369 (33%), Positives = 191/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 3   DQEYMRIALQLAEGTFGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +I+  ++RVV+   D +  VSG G + L + GI +
Sbjct: 63  AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKKRLEEAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E  +    +      KR  +T+K A+S D         S  IT   ++  VH 
Sbjct: 123 TTGVLEEEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITSEDARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+      +P+R+ILD H +    S +I  +L    
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDSLAPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +P    ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF+
Sbjct: 242 IIVGKDVNPEKIASYESENIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            ++  + I+ Y S  +IG    P+              +         G D+ +    ++
Sbjct: 302 QTKYFNEIVTYISPKLIGGKNAPTLFGGNGFSTLQDALSLEIQEMKQVGDDIKIVAHARS 361

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 362 EVMECLQEL 370


>gi|229198234|ref|ZP_04324942.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus m1293]
 gi|228585253|gb|EEK43363.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus m1293]
          Length = 373

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 123/369 (33%), Positives = 191/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 6   DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +I+  ++RVV+   D +  VSG G + L + GI +
Sbjct: 66  AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKKRLEEAGIEV 125

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  IT   ++  VH 
Sbjct: 126 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITSEDARADVHQ 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+      +P+R+ILD H +    S +I   L    
Sbjct: 186 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDGLAPTW 244

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +P    ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF+
Sbjct: 245 IIVGKDVNPEKIASYESENIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 304

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            ++  + I+ Y S  +IG    P+              +         G D+ +    ++
Sbjct: 305 QTKYFNEIVTYISPKLIGGKNAPTLFGGNGFSTLQDALSLEIQEMKQVGDDIKIVAHARS 364

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 365 EVMECLQEL 373


>gi|304315557|ref|YP_003850702.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777059|gb|ADL67618.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 356

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 111/358 (31%), Positives = 195/358 (54%), Gaps = 13/358 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL+ ++  +G T+ NP V  +IVK+G +IG G   Y G PHAE+ AL+   E+  GA
Sbjct: 1   MKRALQLAKLGLGHTNPNPLVGAVIVKNGRIIGEGYHEYYGGPHAEINALKSVKEDVIGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
             YVTLEPC HYG++PPC   I++ GI+ V + ++DP+  VSG+G++ L + G+ +   +
Sbjct: 61  QLYVTLEPCCHYGKTPPCVDAIVKSGIKDVFIAMEDPNKLVSGKGIKHLKEAGLNVYTGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           ++ E +     ++     K+ ++ LK A++ D  I      S  IT   S+  VH++R  
Sbjct: 121 LKEEAEKINEIFIKYITTKKPYVILKSAMTIDGKIATYTGDSKWITNEKSREHVHIMRGC 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
             AI+VG+ TV+ D+P LT R++G    +P+R+++D   ++ L++ ++       ++  T
Sbjct: 181 VMAIMVGVNTVIKDNPYLTARIDGF--KNPLRVVVDSRGRIPLEANVVIDKSAKTIVATT 238

Query: 250 ENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           +        A R   +++   D      DLKKL+ +L  RG+ S+++EGG  + +S +  
Sbjct: 239 DMMPYKKVKALRDLGVDVFVLDKLNGEVDLKKLMDMLGERGIDSVIIEGGGTLNYSALKE 298

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE-YIGK 357
            +VD ++ Y +  +IG     +P+E   ++          +    F  D+ +E YI K
Sbjct: 299 GIVDKVMFYIAPKIIGGSNSLTPVEGKGIDLIKDAIMIEKLDVKRFDDDILIEGYIKK 356


>gi|26246419|ref|NP_752458.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli CFT073]
 gi|191173514|ref|ZP_03035041.1| riboflavin biosynthesis protein RibD [Escherichia coli F11]
 gi|218688277|ref|YP_002396489.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli ED1a]
 gi|227884578|ref|ZP_04002383.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli 83972]
 gi|300988034|ref|ZP_07178514.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 45-1]
 gi|300997399|ref|ZP_07181739.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 200-1]
 gi|331645587|ref|ZP_08346691.1| riboflavin biosynthesis protein RibD [Escherichia coli M605]
 gi|26106817|gb|AAN79002.1|AE016756_185 Riboflavin biosynthesis protein ribD [Escherichia coli CFT073]
 gi|190906223|gb|EDV65835.1| riboflavin biosynthesis protein RibD [Escherichia coli F11]
 gi|218425841|emb|CAR06647.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli ED1a]
 gi|222032209|emb|CAP74948.1| riboflavin biosynthesis protein ribD [Escherichia coli LF82]
 gi|227838664|gb|EEJ49130.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli 83972]
 gi|281177584|dbj|BAI53914.1| pyrimidine deaminase/reductase [Escherichia coli SE15]
 gi|300304218|gb|EFJ58738.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 200-1]
 gi|300407586|gb|EFJ91124.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 45-1]
 gi|312944991|gb|ADR25818.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315294207|gb|EFU53558.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 153-1]
 gi|324010091|gb|EGB79310.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 57-2]
 gi|324010674|gb|EGB79893.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 60-1]
 gi|330910208|gb|EGH38718.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia
           coli AA86]
 gi|331045749|gb|EGI17875.1| riboflavin biosynthesis protein RibD [Escherichia coli M605]
          Length = 367

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 128/367 (34%), Positives = 186/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|114566748|ref|YP_753902.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114337683|gb|ABI68531.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 367

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 133/361 (36%), Positives = 192/361 (53%), Gaps = 12/361 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D RFM  AL  +    G TS NP V  ++VKDG ++G G     G PHAE+ AL  A
Sbjct: 3   NNDDQRFMQRALELAARARGRTSPNPLVGAVLVKDGQILGEGYHQRAGTPHAEINALNTA 62

Query: 64  G-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           G E A+GA+ YV LEPCSHYGR+ PCA  ++E G+  VV+   DP+ +VSGRG+Q L + 
Sbjct: 63  GRERAKGASIYVNLEPCSHYGRTAPCALALVEAGVAEVVIATLDPNPQVSGRGVQILQEA 122

Query: 123 GII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI     ++ +E +     +       R  ++LK+A++ D  I  +   S  ITG  S+ 
Sbjct: 123 GIKTRVGVLTAEARELNEFFFKYIQGGRPFVSLKVAMTLDGKIASSNGDSRWITGTASRE 182

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH LR   D I+VGIGTVL DDP L  RL    +  P+RII+D    + LDS I +T  
Sbjct: 183 YVHQLRNIYDGIMVGIGTVLKDDPRLNTRLELEGKRDPVRIIIDGRLDMPLDSNIARTGH 242

Query: 242 LAPVIIVT-ENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGA 296
               ++ T EN D   A + R+  + II      D  ++++ L IL    + SLL+EGGA
Sbjct: 243 EQRTLVFTAENADQEKANSLRECGLEIIKLGGNPDRLNIEEALDILGKMEIMSLLLEGGA 302

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVC 351
            +    I  +LVD +  + +  +IG    PSPL    ++          V   +F  D+ 
Sbjct: 303 EINSYMIEKQLVDKLYWFIAPKIIGGRSSPSPLGGEGIKIMNQAIKLKSVTTRHFDDDIL 362

Query: 352 L 352
           +
Sbjct: 363 I 363


>gi|332094564|gb|EGI99610.1| riboflavin biosynthesis protein RibD [Shigella boydii 5216-82]
          Length = 367

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LR+QS AIL    TVLADDP LT R + L E             P+RI++D   +++  
Sbjct: 182 RLRSQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPG 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETERTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|228998898|ref|ZP_04158483.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides Rock3-17]
 gi|228760914|gb|EEM09875.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides Rock3-17]
          Length = 370

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 124/369 (33%), Positives = 190/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 3   DQEYMRIALQLAQSTAGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALRMAGDK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A G+T YVTLEPCSH+G++PPC   +IE  ++RVV+   D +  VSG G + L + GI +
Sbjct: 63  ANGSTVYVTLEPCSHFGKTPPCCDLLIEKKVKRVVIATLDCNPLVSGSGAKRLQKAGISV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E       +      K   +T+K A+S D  I      S  ITG +++  VH 
Sbjct: 123 TTSVLEEEATALNRYFFHYMKTKLPFVTIKTAMSLDGKIATTTGESKWITGEVARTDVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAIL+G+ TV+AD+P LT RL       P+RIILD H +  L S +I   +    
Sbjct: 183 YRHTHDAILIGVNTVIADNPSLTTRLPNG-GKHPIRIILDTHLRTPLSSHVITDEMAPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +      +  + ++++       +++ LL +L  + + SL VEGG +V  SF+
Sbjct: 242 IIVGKDVNKEKIAGYESQAVSVLQMKTSQIEIRDLLLLLGEKQILSLFVEGGQSVHASFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            ++  + I+ Y S  +IG    P+        K     +         G D+ +    +N
Sbjct: 302 ETKCFNEIVTYISPKLIGGKDAPTMFGGTGFIKLQDAISLQIQEMKQIGDDIKIVASVRN 361

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 362 EVPACLQEL 370


>gi|82775681|ref|YP_402028.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Shigella dysenteriae Sd197]
 gi|309787001|ref|ZP_07681613.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 1617]
 gi|81239829|gb|ABB60539.1| bifunctional pyrimidine deaminase/reductase [Shigella dysenteriae
           Sd197]
 gi|308924579|gb|EFP70074.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 1617]
          Length = 367

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 186/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R + L E           H P+RI++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLHQPVRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
             I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HHIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|65321502|ref|ZP_00394461.1| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Bacillus
           anthracis str. A2012]
          Length = 370

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 191/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 3   DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +I+  ++RVV+   D +  VSG G + L + GI +
Sbjct: 63  AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+      +P+R+ILD H +    S +I  +L    
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDSLAPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV  + +     ++  KNI I     +  +++ +L +L  + + SL VEGG  V  SF+
Sbjct: 242 IIVGTDVNQEKIASYESKNIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            ++  + I+ Y S  +IG    P+              +         G D+ +    +N
Sbjct: 302 QTKYFNEIVTYISPKLIGGSKAPTLFGGNGFSXLQDALSXEIQEMKQIGDDIKIVAHARN 361

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 362 EVTKCLQEL 370


>gi|331656468|ref|ZP_08357430.1| riboflavin biosynthesis protein RibD [Escherichia coli TA206]
 gi|315299580|gb|EFU58828.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 16-3]
 gi|331054716|gb|EGI26725.1| riboflavin biosynthesis protein RibD [Escherichia coli TA206]
          Length = 367

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GAT YVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATVYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|301049614|ref|ZP_07196565.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 185-1]
 gi|300298607|gb|EFJ54992.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 185-1]
          Length = 367

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 128/367 (34%), Positives = 186/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQPQGLSPQQNLRQPVRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|313895132|ref|ZP_07828689.1| riboflavin biosynthesis protein RibD [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312976027|gb|EFR41485.1| riboflavin biosynthesis protein RibD [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 386

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 130/362 (35%), Positives = 194/362 (53%), Gaps = 7/362 (1%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D  FM  AL  + +  G TS NP V  +IV+DGIV+G G     G PHAE+ AL  AG
Sbjct: 23  ARDEHFMWEALHLAEFARGRTSPNPLVGAVIVRDGIVVGSGWHRAAGEPHAEIHALRMAG 82

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGAT YVTLEPCSH+GR+ PCA+ +I  GI RVV  + DP+  V+G G++ L   GI
Sbjct: 83  ELARGATLYVTLEPCSHHGRTGPCAEAVIAAGIARVVTALSDPNPVVAGHGIERLRAAGI 142

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++  E +     +L   V KR  +TLK A++ D         S  ITG  ++ +V
Sbjct: 143 EVTTGVLSEEARRQNEVFLKWVVTKRPFVTLKTAMTLDGKTASRTGASQWITGAEARMRV 202

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  R   DAILVGIGTVLAD+P LT RL      +P+R++LD   +   D+K++      
Sbjct: 203 HEWRDAHDAILVGIGTVLADNPSLTVRLPHRTGKNPVRVVLDSTARTPHDAKLLTDGAAR 262

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            +I V+E   P      +     ++    +  D+  L+  L    +TS+ VEGGA+V  S
Sbjct: 263 TIIAVSERAAPKRTALLQACGAEVVTFGRERVDIPALMDFLGREELTSVFVEGGASVHWS 322

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           F+++ LVD +  + + +++G    P+ +     E     +R      D  +E +G ++ +
Sbjct: 323 FLSAGLVDKVRAFIAPMLMGGADAPTAVGGAGFESPQAALRLT----DTTVERVGADILM 378

Query: 362 QE 363
             
Sbjct: 379 TG 380


>gi|229117606|ref|ZP_04246978.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock1-3]
 gi|228665926|gb|EEL21396.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock1-3]
          Length = 379

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 128/369 (34%), Positives = 194/369 (52%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE+
Sbjct: 12  DQEYMRIALQLAKGTSGQTSPNPMVGAVVVKDGNIVGMGAHLCAGEEHAEVHALHMAGEK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++R+V+   D +  VSG G + L + GI +
Sbjct: 72  AKNATVYVTLEPCSHFGKTPPCCELLIEKGVKRIVIATLDCNPLVSGNGKKKLEEAGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLETEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGAEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+    +HS +R+ILD H +    S +I   L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKHS-IRVILDTHLRTPPSSHVITDTLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +     ++  KNI I     +  +++ +L +L  + + SL +EGG  V  SF+
Sbjct: 251 IIVGKDVNKEKIASYESKNIAIFQMKTKQIEIQDVLDLLGEKQILSLFIEGGQTVHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG  G P+        K     +         G D+ +    +N
Sbjct: 311 QTNNFNEIVTYISPKLIGGKGAPTLFGGNGFSKLQDSLSLKIQEMKQIGDDIKIVATARN 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTKCLQEL 379


>gi|219871320|ref|YP_002475695.1| riboflavin biosynthesis protein RibD [Haemophilus parasuis SH0165]
 gi|219691524|gb|ACL32747.1| riboflavin biosynthesis protein RibD [Haemophilus parasuis SH0165]
          Length = 363

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 115/355 (32%), Positives = 187/355 (52%), Gaps = 12/355 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM+ A+  +    G T+ NP V C+IVKDG +I  G     G  HAE  A+    E+  G
Sbjct: 6   FMARAIELAELGRGWTNPNPLVGCVIVKDGKIIAEGYHQRYGEWHAERNAILHCQEDLSG 65

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           ATAYVTLEPC H+G +PPC+  +IE GI+ VV+   DP+  V+G+G+  L Q GI +++ 
Sbjct: 66  ATAYVTLEPCCHHGWTPPCSDLLIERGIKTVVIGSSDPNPLVAGKGVAQLRQAGIEVIEN 125

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +M++E       +      KR ++ +K A++ D  I  A   +  ITG  ++  V   R 
Sbjct: 126 VMKAECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATATGEAKWITGEQARANVQCTRH 185

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           Q  AI+VG+ TVLAD+P L  R+       P+RI+ D   +  L+ ++++TA     II 
Sbjct: 186 QYSAIMVGVDTVLADNPMLNSRMP--NAKQPVRIVCDSRLRTPLECQLVQTAKTYRTIIA 243

Query: 249 TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           T +DD      F+   + ++ C  +    DL  LL  L  +G+ SLL+EGG+++  S +N
Sbjct: 244 TVSDDLQKIAQFQPLGVEVLVCKAKDKRIDLADLLQKLGDQGIDSLLLEGGSSLNFSALN 303

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEY 354
           + +V+ +  Y +  ++G     +P+    +            +    G D+ ++Y
Sbjct: 304 AGIVNRVHCYIAPKLVGGVTAKTPIGGEGIGVLANAVQLKNAKIRQIGEDLLIDY 358


>gi|167855405|ref|ZP_02478171.1| formyltetrahydrofolate deformylase [Haemophilus parasuis 29755]
 gi|167853471|gb|EDS24719.1| formyltetrahydrofolate deformylase [Haemophilus parasuis 29755]
          Length = 363

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 115/355 (32%), Positives = 189/355 (53%), Gaps = 12/355 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM+ A+  +    G T+ NP V C+IVKDG ++  G     G  HAE +A+    E+  G
Sbjct: 6   FMARAIELAELGRGWTNPNPLVGCVIVKDGNIVAEGYHQRYGEWHAERKAILHCQEDLSG 65

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           ATAYVTLEPC H+GR+PPC+  +IE GI+ VV+   DP+  V+G+G+  L Q GI +++ 
Sbjct: 66  ATAYVTLEPCCHHGRTPPCSDLLIERGIKTVVIGSSDPNPLVAGKGVAQLRQAGIEVIEN 125

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +M++E       +      KR ++ +K A++ D  I  A   +  ITG  ++  V   R 
Sbjct: 126 VMKAECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATATGEAKWITGEQARANVQCTRH 185

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           Q  AI+VG+ TVLAD+P L  R+       P+RI+ D   +  L+ ++++TA     II 
Sbjct: 186 QYSAIMVGVDTVLADNPMLNSRMP--NAKQPVRIVCDSRLRTPLECQLVQTAKTYRTIIA 243

Query: 249 TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           T +DD      F+   + ++ C  +    DL  LL  L  +G+ SLL+EGG+++  S +N
Sbjct: 244 TVSDDLQKIAQFQPLGVEVLVCKAKDKRIDLADLLQKLGDQGIDSLLLEGGSSLNFSALN 303

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEY 354
           + +V+ +  Y +  ++G     +P+    +            +    G D+ ++Y
Sbjct: 304 AGIVNRVHCYIAPKLVGGVTAKTPIGGEGIGVLANAVQLKNAKIRQIGEDLLIDY 358


>gi|74310983|ref|YP_309402.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Shigella sonnei Ss046]
 gi|73854460|gb|AAZ87167.1| bifunctional pyrimidine deaminase/reductase in pathway of
           riboflavin synthesis [Shigella sonnei Ss046]
          Length = 367

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
             RAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|320529850|ref|ZP_08030927.1| riboflavin biosynthesis protein RibD [Selenomonas artemidis F0399]
 gi|320137868|gb|EFW29773.1| riboflavin biosynthesis protein RibD [Selenomonas artemidis F0399]
          Length = 369

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 131/362 (36%), Positives = 194/362 (53%), Gaps = 7/362 (1%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D  FM  AL  + +  G TS NP V  +IV+DGIV+G G     G PHAE+ AL  AG
Sbjct: 6   ARDEHFMWEALHLAEFARGRTSPNPLVGAVIVRDGIVVGSGWHRVAGEPHAEIHALRMAG 65

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGAT YVTLEPCSH+GR+ PCA+ +I  GI RVV  + DP+  V+G G++ L   GI
Sbjct: 66  ELARGATLYVTLEPCSHHGRTGPCAEAVIAAGIARVVTALSDPNPVVAGHGIERLRAAGI 125

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++  E +     +L   V KR  +TLK A++ D         S  ITG  ++ +V
Sbjct: 126 EVTTGVLSEEARRQNEVFLKWVVTKRPFVTLKTAMTLDGKTASRTGASQWITGAEARTRV 185

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  R   DAILVGIGTVLADDP LT RL      +P+R++LD   +   D+K++      
Sbjct: 186 HEWRDAHDAILVGIGTVLADDPSLTVRLPHRTGKNPVRVVLDSTARTPHDAKLLTDGAAR 245

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            +I V+E   P      +     ++    +  D+  L+  L    +TS+ VEGGA+V  S
Sbjct: 246 TIIAVSERAAPKRTALLQACGAEVVTFGRERVDIPALMDFLGREELTSVFVEGGASVHWS 305

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           F+++ LVD +  + + +++G    P+ +     E     +R      D  +E +G ++ +
Sbjct: 306 FLSAGLVDKVCAFIAPMLMGGADAPTAVGGAGFESPQTALRLT----DTTVEQVGADILM 361

Query: 362 QE 363
             
Sbjct: 362 TG 363


>gi|168187451|ref|ZP_02622086.1| riboflavin biosynthesis protein RibD [Clostridium botulinum C str.
           Eklund]
 gi|169294672|gb|EDS76805.1| riboflavin biosynthesis protein RibD [Clostridium botulinum C str.
           Eklund]
          Length = 372

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 131/369 (35%), Positives = 190/369 (51%), Gaps = 14/369 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +FM  A+  S+   G T  NP V  +IVKD  +IG+G     G  HAEV AL+ A E+  
Sbjct: 4   KFMKKAIELSKLGAGYTYPNPLVGAVIVKDNKIIGQGYHERFGGLHAEVNALKNATEDVT 63

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GAT YVTLEPCSHYG++PPCA  I++ GI+ V+V + DP+  V+GRG+  L + GI +  
Sbjct: 64  GATMYVTLEPCSHYGKTPPCANTIVKSGIKEVIVGMRDPNELVAGRGINILKENGIKVTV 123

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + E E K     ++     K+    LK A++ D  I      S  I+  IS+  VH +R
Sbjct: 124 GIFEEEIKKINEIFIKYITTKKPFCILKTAMTLDGKIATVTGDSKWISNEISRQYVHKIR 183

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            +   I+VGIGTVL DDP LT RL         RII+D   ++ L+SK++        II
Sbjct: 184 HRVAGIMVGIGTVLKDDPSLTTRLKEKAGRDATRIIVDSKGRIPLNSKVLNLDSKEKTII 243

Query: 248 VTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            T    D       +KK   +I    +    DL+ L+  L    + S+L+EGG  + +S 
Sbjct: 244 ATTKLADKEKIDEIKKKGAEVIITPIKNGKVDLRFLMNELGKINIDSILLEGGGTLNYSA 303

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE-YIG 356
           +N  +VD +I + S  +IG     +P+    ++       F  +    F  DV +E YI 
Sbjct: 304 LNEGIVDKVISFISPKIIGGQDAKTPVAGEGIKNISDAVTFHNIEISRFEEDVVIEGYIK 363

Query: 357 KN--LCLQE 363
           K   +C QE
Sbjct: 364 KENKVCSQE 372


>gi|293413668|ref|ZP_06656317.1| riboflavin biosynthesis protein RibD [Escherichia coli B185]
 gi|291433726|gb|EFF06699.1| riboflavin biosynthesis protein RibD [Escherichia coli B185]
          Length = 367

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 128/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQHNLRQPVRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
             I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HHIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|295704047|ref|YP_003597122.1| riboflavin biosynthesis protein RibD [Bacillus megaterium DSM 319]
 gi|294801706|gb|ADF38772.1| riboflavin biosynthesis protein RibD [Bacillus megaterium DSM 319]
          Length = 363

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 125/356 (35%), Positives = 199/356 (55%), Gaps = 10/356 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M+ AL+ +R   G T  NP V  +IV D  ++G G     G PHAE+ AL  AGE+A
Sbjct: 5   EFYMNIALQNARSTKGQTEPNPLVGSVIVNDNRIVGIGTHLKAGEPHAEIHALRMAGEQA 64

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           +GATAYVTLEPCSH+GR+ PCA+ ++E G+++VV+   DP+  V+G G++ L   GI ++
Sbjct: 65  KGATAYVTLEPCSHHGRTGPCAEALVEAGVKKVVIATLDPNPLVAGNGVEILKNAGIEVI 124

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             + E E +     +    V K+  ++LK A++ D  I  A   S  IT   ++  VH L
Sbjct: 125 TGVCEEESRQMNEVFNKYIVTKKPFVSLKSAITLDGKIATASSHSKWITSEEARLDVHQL 184

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R ++  ILVG+ TV+ D+PELT R+ G    SP+RI++D   ++ L+SK+   +L    I
Sbjct: 185 RHETAGILVGVNTVIKDNPELTTRIEG--GRSPIRIVMDSKLRMPLESKLATDSLAPTWI 242

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD---LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
             ++           K+ + +      D   L+ +L+IL  + V+SLL+EGG  V  +F+
Sbjct: 243 FTSQGYSKEKKEQLEKQGVEVFVTSGEDKVNLEDMLSILGEKFVSSLLIEGGGEVNAAFL 302

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
            +RL+D ++LY +  + G    P+ LE   +EK +  V  +       +  IGK+ 
Sbjct: 303 ENRLIDKLVLYMAPKLSGGKEAPTFLEGKGVEKMWDAVDVERL----SVTSIGKDF 354


>gi|170680144|ref|YP_001742551.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli SMS-3-5]
 gi|300937023|ref|ZP_07151889.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 21-1]
 gi|170517862|gb|ACB16040.1| riboflavin biosynthesis protein RibD [Escherichia coli SMS-3-5]
 gi|300457854|gb|EFK21347.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 21-1]
          Length = 367

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 185/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG  +G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGETVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             DD        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQDDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|17227578|ref|NP_484126.1| riboflavin biosynthesis protein [Nostoc sp. PCC 7120]
 gi|17135060|dbj|BAB77606.1| riboflavin biosynthesis protein [Nostoc sp. PCC 7120]
          Length = 396

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 118/362 (32%), Positives = 186/362 (51%), Gaps = 8/362 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           + FD R M   L  +R  +G TS NP V  ++VKDG ++G G     G PHAEV AL  A
Sbjct: 35  NDFDVRMMQRCLELARRALGRTSPNPLVGAVVVKDGEIVGEGFHPRAGEPHAEVFALRAA 94

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGAT YV LEPC+HYGR+PPC++ +I  G+ +VVV + DP+  V G G+  L   G
Sbjct: 95  GELARGATVYVNLEPCNHYGRTPPCSEALIAAGVAKVVVGMVDPNPLVGGGGIARLRGAG 154

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + ++  +  +  +     ++ R V K+    LK A++ D  I      S  +T   ++ +
Sbjct: 155 VEVLVGVEMAACQQLNEGFVHRIVHKKPLGILKYAMTLDGKIATTSGHSAWVTNPSARGE 214

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LRA  DA++VG  TV  D+P LT    G+  H+P+R+++     L LD+ + +T   
Sbjct: 215 VHQLRAACDAVIVGGNTVRRDNPYLTSHQEGV--HNPLRVVMSRQMDLPLDAHLWETVEA 272

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             +++     +P      ++K + I+       + +++ L  RG  S+L E G  +A S 
Sbjct: 273 PTLVLTQVGANPDFQKLLQQKGVEIVELASLTPETVMSYLYDRGFCSVLWECGGTLAASA 332

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
           I    V  I+ + +  +IG    P+P+ +   +          VR    GSD  +E    
Sbjct: 333 IAQGAVQKILAFIAPKIIGGSHAPTPVGDLGFDTMTEALILERVRWRVVGSDCLVEGYLP 392

Query: 358 NL 359
           +L
Sbjct: 393 SL 394


>gi|302390233|ref|YP_003826054.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           ;5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200861|gb|ADL08431.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           ;5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Thermosediminibacter oceani DSM 16646]
          Length = 373

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 136/371 (36%), Positives = 203/371 (54%), Gaps = 15/371 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D  FM  AL  ++   G TS NP V  ++VKDG ++G G     G PHAEV+AL +A 
Sbjct: 2   ERDVFFMRRALDLAKKGRGTTSPNPMVGAVVVKDGEIVGEGYHRKAGEPHAEVEALAQAA 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGA  YV LEPC HYGR+PPCA  II  G++RVV  + DP+  V+G+G++ L + GI
Sbjct: 62  ERARGAELYVNLEPCCHYGRTPPCADTIIRAGVKRVVAAMADPNPLVAGKGIKRLKEAGI 121

Query: 125 IVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V   +  E        ++   +  +  +  KIA S D  I MA   S  ITG  ++ + 
Sbjct: 122 EVVVGVLEEEAKKLNEVFIKYIITGKPFVVAKIAQSFDGKIAMASGESRWITGEPARVKA 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H LR+  DAI+VG+GTV+ADDP LTCRL   +  +P+RI++D   ++  D+++++     
Sbjct: 182 HELRSWYDAIMVGVGTVMADDPLLTCRLPE-KRKNPVRIVVDSGARMPPDARMLRCEGGR 240

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVA 299
            ++  TE  D     A +++ + +I         DL +L+ IL G G+TS+LVEGG+ + 
Sbjct: 241 VILATTERADSERVSALKERGVEVIKVPPAEGRVDLSRLMEILGGMGITSVLVEGGSTLT 300

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYI 355
            S I   LVD ++++ + +VIG  GI S     ++       F     D  G D+ LE  
Sbjct: 301 SSLIKGNLVDKLLVFVAPVVIGGEGIDSVGKLHVDRLSQAPRFKFHSIDAIGGDLLLEAY 360

Query: 356 G-----KNLCL 361
                 ++ CL
Sbjct: 361 PDLKREEDSCL 371


>gi|186680558|ref|YP_001863754.1| riboflavin biosynthesis protein RibD [Nostoc punctiforme PCC 73102]
 gi|186463010|gb|ACC78811.1| riboflavin biosynthesis protein RibD [Nostoc punctiforme PCC 73102]
          Length = 407

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 188/374 (50%), Gaps = 17/374 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           + FD+R M   L  +R  +G TS NP V  +IVKDG ++G G     G PHAEV AL+ A
Sbjct: 36  TDFDSRMMLRCLELARRALGRTSPNPLVGAVIVKDGEIVGEGFHPRAGEPHAEVFALQAA 95

Query: 64  G--------EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           G          ARGAT YV LEPC+HYGR+PPC++ +I+ G+ +VVV + DP+  V+G G
Sbjct: 96  GVGAASPQENRARGATIYVNLEPCNHYGRTPPCSEGLIQAGVAKVVVGMVDPNPLVAGGG 155

Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           +  L   GI ++  + ES       A++ R + KR    LK A++ D  I      S  +
Sbjct: 156 IARLRAAGIEVLVGVEESACHQLNEAFVHRILYKRPLGILKYAMTLDGKIATTSGHSAWV 215

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           T   ++++VH LRA  DAI+VG  TV  D+P LT     L+ H+P+R+++  H  L   +
Sbjct: 216 TSQEARSEVHQLRAACDAIIVGGNTVRQDNPYLTSH--HLEAHNPLRVVMSRHLNLPESA 273

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
            + KTA    +++  +  +P        + + I+          +  L  RG  S+L E 
Sbjct: 274 HLWKTADAPTLVLTQKGANPDFQELLLNQGVEIVELTSLTPDNAMAYLYERGFCSVLWEC 333

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSD 349
           G  +A S I    V  ++ + +  +IG    P+P+ +          +   VR    GSD
Sbjct: 334 GGTLAASAIAQGAVQKVLAFIAPKIIGGSIAPTPVGDLGFTTMTEALSLERVRWRVVGSD 393

Query: 350 VCLE-YIGKNLCLQ 362
             +E Y  +    Q
Sbjct: 394 CLVEGYFSQKANSQ 407


>gi|228909942|ref|ZP_04073763.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis IBL
           200]
 gi|228849777|gb|EEM94610.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis IBL
           200]
          Length = 379

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 190/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AG+ 
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 72  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+       P+R++LD H +    S +I   L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 251 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG    P+        K     +         G D+ +    +N
Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTKCLQEL 379


>gi|299538422|ref|ZP_07051705.1| riboflavin biosynthesis protein ribD [Lysinibacillus fusiformis
           ZC1]
 gi|298726009|gb|EFI66601.1| riboflavin biosynthesis protein ribD [Lysinibacillus fusiformis
           ZC1]
          Length = 370

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 116/365 (31%), Positives = 191/365 (52%), Gaps = 10/365 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + D ++M  AL  +    G T+ NP V  +IVK+G+++G G+    G PHAEV A   
Sbjct: 1   MMNVDEKYMQLALDLAASAKGNTNPNPLVGAVIVKNGVIVGTGLHRKAGEPHAEVHAFRM 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A GAT YVTLEPCSHYG++PPCA  + E G+ RVVV + DP+  V+GRG+Q L   
Sbjct: 61  AGEHAMGATLYVTLEPCSHYGKTPPCANLVKESGVSRVVVAMQDPNPAVAGRGIQLLQDA 120

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI+V+  ++E + +     ++   +  R  +  K A++ D  I      S  +TG  ++ 
Sbjct: 121 GIVVEVGVLEQQARRLNERFIHNMLTHRPFVISKFAMTLDGKIATHTGHSKWVTGEAARE 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH +R + D ILVG+GTV+AD+P LT RL      +P RII+D   +   ++ ++ T  
Sbjct: 181 DVHNIRHEIDGILVGVGTVIADNPSLTTRLKQGYGKNPTRIIMDSSLRTPDNANVLNTED 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297
              +++ +++        F +K + ++     +    + ++L  L   G+T +L+EGG+ 
Sbjct: 241 APTILVCSDDVSQEKIHLFTEKGVTVLPVQKNEYGLQIDEMLEKLYMHGITDILLEGGSK 300

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYFGSDVCL 352
           +  SF+    +D  ++Y +  V+G     +P             N      D  G D+ +
Sbjct: 301 INASFLQQGAIDKYVVYIAPKVLGGKLSLTPFAGYNPSLMDEAWNVEFASFDKIGEDLRI 360

Query: 353 EYIGK 357
               K
Sbjct: 361 IAYPK 365


>gi|210621234|ref|ZP_03292540.1| hypothetical protein CLOHIR_00483 [Clostridium hiranonis DSM 13275]
 gi|210154845|gb|EEA85851.1| hypothetical protein CLOHIR_00483 [Clostridium hiranonis DSM 13275]
          Length = 384

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 120/364 (32%), Positives = 182/364 (50%), Gaps = 11/364 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           ++M  AL  ++  VG  + NP V  +IVK+G +IG G     G  HAE  AL    E  +
Sbjct: 23  KYMQLALENAKKGVGFVNPNPMVGAVIVKNGKIIGEGYHKKYGGLHAERNALNNCSENPK 82

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
            AT YVTLEPC HYG++PPC   IIE  I++VV+   DP+ ++SG+ L  L ++GI +  
Sbjct: 83  DATMYVTLEPCCHYGKTPPCTDAIIENKIKKVVIASLDPNPKMSGKSLDILKKRGIKVEK 142

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++E+EG      +      K+  +  K A++ D  I      S  ITG  ++  V   R
Sbjct: 143 GLLENEGDKLNETFRKFITTKKPFVLFKYAMTMDGKIATKINESKWITGEEARLNVQKTR 202

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            +   I+VG+ TV+ D+P L C++      +P+RII D + +  + SKI+ TA   P II
Sbjct: 203 HKYSGIMVGVDTVIIDNPMLNCKIE--NGLNPIRIICDTNLRTPIGSKIVSTAKEIPTII 260

Query: 248 VTENDDPVLALAFRKKNINIIY----CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            T +DD +    + +K   I+         DL+ L++ L  + + S+L+EGGA +A S  
Sbjct: 261 ATCSDDEIKKEQYIEKGCEILQIKIKKKKIDLQDLMSKLGEKKIDSILLEGGATLAWSAF 320

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVCLEYIGKNL 359
              +VD I  Y +  + G  G  + L EG                 FG D  +E      
Sbjct: 321 ERGIVDKIQAYIAPKIFGGNGKTAVLGEGIDFPKDAIMLKNSEIFRFGDDFMIESDVTYK 380

Query: 360 CLQE 363
           C QE
Sbjct: 381 CSQE 384


>gi|323693355|ref|ZP_08107571.1| riboflavin biosynthesis protein [Clostridium symbiosum WAL-14673]
 gi|323502599|gb|EGB18445.1| riboflavin biosynthesis protein [Clostridium symbiosum WAL-14673]
          Length = 370

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 114/357 (31%), Positives = 181/357 (50%), Gaps = 11/357 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M  AL  +R   GL + NP V  +IVK+G VIGRG     G PHAE  AL    E 
Sbjct: 4   DEKYMRMALSLARKGCGLAAPNPMVGAVIVKEGRVIGRGYHQKYGGPHAEQNALSSCTEP 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            +GA  YVTLEPC H G+ PPC + I+  GI RVVV   DP+  V G+G++ L + G+ +
Sbjct: 64  PQGAVMYVTLEPCCHSGKQPPCVKAILRAGISRVVVGSADPNPLVGGKGIRILREHGVSV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
            + ++  E       +      +   + +K A++ D  I      S  ITG  +++ V  
Sbjct: 124 TEDILREECAKLNEVFFHYIRTEHPFVVMKYAMTMDGKIAAVTGESKWITGEAARHHVQK 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR +  AI+ G+GTV++DDP LTCR       +P+RII D   +    ++++ TA  AP 
Sbjct: 184 LRHRYTAIMAGVGTVISDDPLLTCR-GVRGGKNPVRIICDTRLRTPPAARVVATAGQAPT 242

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           +I T  DDP   + +++   +++    +    DL++L+  L  +G+ S+L+EGG  +  +
Sbjct: 243 VIATCCDDPERHMVYQEAGCSVLTVKEKNGHVDLRELMRKLGKQGIDSILLEGGGTLNWA 302

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
            + S +V     Y +  ++G     +P+E                R    G D  +E
Sbjct: 303 ALESGIVQKTEAYIAPKLLGGETSKTPVEGAGFLSPGDGIVLKNSRIIRLGEDFLIE 359


>gi|229152312|ref|ZP_04280505.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus m1550]
 gi|228631274|gb|EEK87910.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus m1550]
          Length = 379

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 190/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AG+ 
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 72  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+       P+R++LD H +    S +I   L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 251 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG    P+        K     +         G D+ +    +N
Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQNALSLKIQEMKQIGDDIKIVANARN 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTKCLQEL 379


>gi|148264237|ref|YP_001230943.1| riboflavin biosynthesis protein RibD [Geobacter uraniireducens Rf4]
 gi|146397737|gb|ABQ26370.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Geobacter uraniireducens Rf4]
          Length = 368

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 130/370 (35%), Positives = 195/370 (52%), Gaps = 13/370 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +  F  + M  A+  ++  +G T+ NP+V C+IVKDG V+G G     G PHAEV AL +
Sbjct: 1   MEHFHEKMMKRAIVLAKRGIGRTAPNPTVGCVIVKDGAVVGEGWHKKAGTPHAEVHALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGA  YVTLEPC+H+G++PPCA  +I   + RV + + DP+ RV G G+  L   
Sbjct: 61  AGEMARGADVYVTLEPCAHFGKTPPCADALIAAKVCRVHIGMVDPNPRVCGEGISMLRSA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +V  ++E   +     ++         + LK A++ D     AG  S  IT   S+ 
Sbjct: 121 GIEVVVSVLEDNCRSLNEPFIKHMTTGLPFVILKSAMTLDGKTATAGKDSKWITSDKSRQ 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH LRA+ DAI+VG+GTV+ADDP LT R+       P+R+I+D   ++ L S+++    
Sbjct: 181 YVHKLRAKLDAIMVGVGTVMADDPLLTSRIPA--GRDPLRVIVDSTLRIPLSSQVLHVDS 238

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAA 297
            A  +I T +DD   A        +++ C       DL  L   L G GV SLL+EGG A
Sbjct: 239 PAKTVIATISDDEAQAARITASGADVLRCRQKNGRVDLHDLFVKLGGLGVQSLLLEGGGA 298

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
           +A   +   L+D  + + +  ++G  G+  P     +E          +     GSD+ +
Sbjct: 299 LAGEALRCGLIDKCMFFYAPKLVGGEGL-GPFSGKGVELMADAITLKNISITKIGSDILV 357

Query: 353 EYIGKNLCLQ 362
           +   +N CLQ
Sbjct: 358 QGYPENACLQ 367


>gi|320181604|gb|EFW56519.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-5-phosphoribosylaminouracil
           reductase [Shigella boydii ATCC 9905]
          Length = 367

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LR+QS AIL    TVLADDP LT R + L E             P+RI++D   +++  
Sbjct: 182 RLRSQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPG 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLLGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|228922861|ref|ZP_04086159.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228836916|gb|EEM82259.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 379

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 126/369 (34%), Positives = 191/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AG+ 
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 72  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D  I      S  ITG  ++  VH 
Sbjct: 132 TTGILEAEALLLNRYFFHYMKTKRPFVTIKTAMSLDGKIATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+       P+R++LD H +    S +I   L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 251 IIVGKDVKKAKISSYESKNIAIFQMETKYIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG    P+        K     +         G D+ +    +N
Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTKCLQEL 379


>gi|228992853|ref|ZP_04152778.1| RibD (Riboflavin-specific deaminase) [Bacillus pseudomycoides DSM
           12442]
 gi|228766902|gb|EEM15540.1| RibD (Riboflavin-specific deaminase) [Bacillus pseudomycoides DSM
           12442]
          Length = 373

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 124/369 (33%), Positives = 190/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 6   DQEYMRIALQLAQSTAGQTSPNPMVGAVVVKDGNIVGMGAHLLAGEEHAEVHALRMAGDK 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A G+T YVTLEPCSH+G++PPC   +IE  ++RVV+   D +  VSG G + L + GI +
Sbjct: 66  ANGSTVYVTLEPCSHFGKTPPCCDLLIEKKVKRVVIATLDCNPLVSGSGAKRLQKAGISV 125

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E       +      K   +T+K A+S D  I      S  ITG +++  VH 
Sbjct: 126 TTGVLEEEATALNRYFFHYMKTKLPFVTIKTAMSLDGKIATTTGESKWITGEVARTDVHQ 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAIL+G+ TV+AD+P LT RL       P+RIILD H +  L S +I   +    
Sbjct: 186 YRHTHDAILIGVNTVIADNPSLTTRLPNG-GKHPIRIILDTHLRTPLSSHVITDEMAPTW 244

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +      +  + ++++       +++ LL +L  + + SL VEGG +V  SF+
Sbjct: 245 IIVGKDVNKEKIAGYESQAVSVLQMKTSQIEIRDLLLLLGEKQILSLFVEGGQSVHASFL 304

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            ++  + I+ Y S  +IG    P+        K     +         G D+ +    +N
Sbjct: 305 ETKCFNEIVTYISPKLIGGKDAPTMFGGTGFIKLQDAISLQIQEMKQIGDDIKIVASVRN 364

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 365 EVPACLQEL 373


>gi|167768613|ref|ZP_02440666.1| hypothetical protein CLOSS21_03172 [Clostridium sp. SS2/1]
 gi|167710137|gb|EDS20716.1| hypothetical protein CLOSS21_03172 [Clostridium sp. SS2/1]
          Length = 361

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 122/353 (34%), Positives = 183/353 (51%), Gaps = 12/353 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A+  ++   G T+ NP V  +IVKD  VIG G     G  HAE  AL+   E+ +GA
Sbjct: 1   MRRAIELAKKGCGYTNPNPLVGAVIVKDQKVIGEGYHEKIGGLHAERNALKNCIEDPKGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129
             YVTLEPC HYG++PPC + +IE GI++V V   DP+ +V+G G++ L+  GI  +  +
Sbjct: 61  EIYVTLEPCCHYGKTPPCTEALIEAGIKKVYVGNLDPNPKVAGGGIKILNDHGIETETGI 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E E +     +         +  LK A++ D  I  A   S  ITG  ++  VH LR Q
Sbjct: 121 LEEECRQLNDIFFHYIQNDIPYTALKYAMTLDGKIATATGESKWITGEEARRHVHTLRHQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
             AI+ GIGTVLADDP L  R+     + P+R+I D + ++S  S I+KTA   P II T
Sbjct: 181 YAAIMAGIGTVLADDPMLNARIEH--GNDPIRVICDSNLRISEGSNIVKTAREIPTIIAT 238

Query: 250 ENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
            + D        +K   I+    +D    +K++L  L    + S+LVEGG  +  S I +
Sbjct: 239 ISKDQEKIAKLEQKGCKILKTSEQDGKVNVKEVLKQLRNMEIDSVLVEGGGILNESLIKN 298

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
             V  +  Y +  + G     +P+E   +E+      F  ++    G+D+ LE
Sbjct: 299 DCVHKVYAYIAPKLFGGEKAKTPVEGKGIERIQEALVFDELKATPLGNDILLE 351


>gi|307153764|ref|YP_003889148.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7822]
 gi|306983992|gb|ADN15873.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7822]
          Length = 369

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 119/356 (33%), Positives = 190/356 (53%), Gaps = 8/356 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+FD   M   +  +R  +G TS NP V  +IV++  ++G G     G PHAEV AL  A
Sbjct: 10  SAFDREMMQRCITLARKALGATSPNPMVGAVIVREQEIVGEGFHPGAGQPHAEVFALSVA 69

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            E+A+GAT Y+ LEPC+HYGR+PPC + +I+ GI +V+V + DPD RVSG+G++ L++ G
Sbjct: 70  AEKAKGATIYINLEPCNHYGRTPPCTEALIKAGIAKVMVGMIDPDPRVSGKGIERLTEAG 129

Query: 124 IIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   +E E        ++ R + +R    LK A++ D  I      S  +TG  S+  
Sbjct: 130 IEVVAGIEEEACRRLNEGFIHRVLYQRPFGILKYAMTLDGKIAATSGHSAWVTGEASRRI 189

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LRA  DA+++G  TV  D+P LT    G+  H+P+R+++     L L++ + +T  +
Sbjct: 190 VHQLRAACDAVIIGGNTVRQDNPHLTTH--GVSSHNPLRVVMSRSLNLPLEANLWETDKV 247

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             V+   E  +P L     K+ + +I  +     +++  L  RG  S+L E G  +A S 
Sbjct: 248 PTVVFTEEGINPPLQKQLLKRKVEVIELEVLTPTQVMQHLYQRGFCSVLWECGGTLAASA 307

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
           I   +V  ++ + +  +IG    PSP+ +  L+K         V      +D  +E
Sbjct: 308 ITEGMVQKVMAFIAPKIIGGESAPSPVGDLGLDKMSNALQLQRVALQRVDNDFVIE 363


>gi|229081368|ref|ZP_04213871.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock4-2]
 gi|228701990|gb|EEL54473.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock4-2]
          Length = 373

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 190/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AG+ 
Sbjct: 6   DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 66  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 125

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 126 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+       P+R++LD H +    S +I   L    
Sbjct: 186 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTW 244

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 245 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 304

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG    P+        K     +         G D+ +    +N
Sbjct: 305 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 364

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 365 EVTKCLQEL 373


>gi|296503905|ref|YP_003665605.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
           thuringiensis BMB171]
 gi|296324957|gb|ADH07885.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
           thuringiensis BMB171]
          Length = 365

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 123/355 (34%), Positives = 190/355 (53%), Gaps = 10/355 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M  AL  ++   G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+A
Sbjct: 5   ELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQA 64

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           RGAT YVTLEPCSH+GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++
Sbjct: 65  RGATIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVL 124

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             + E E K     +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +
Sbjct: 125 VGVCEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQI 184

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R ++ AILVG  TV  D+P LT R+      +P+RIILD   ++ +++ ++        I
Sbjct: 185 RNENAAILVGANTVQKDNPSLTTRIP--NGRNPIRIILDSTLRIPMEANVVTDGEAPTWI 242

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
             T N       A     + +         +L ++L +L  +GV+SLL+EGG  V  SFI
Sbjct: 243 FTTSNHAAKKKKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFI 302

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
            ++L+D +ILY +  +IG    PS +    + K    +       D+    +GK+
Sbjct: 303 ENKLMDKLILYVAPKIIGGRLAPSFVGGTGITKMQDAIEFK----DISFTQVGKD 353


>gi|78222833|ref|YP_384580.1| 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidine
           deaminase [Geobacter metallireducens GS-15]
 gi|78194088|gb|ABB31855.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Geobacter
           metallireducens GS-15]
          Length = 370

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 131/371 (35%), Positives = 199/371 (53%), Gaps = 14/371 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M VS    + M  AL  +R   G TS NP+V C+IV+DG ++G G     G PHAEV AL
Sbjct: 1   MDVSP--EKIMKRALALARRGKGKTSPNPAVGCVIVRDGAIVGEGWHRKAGTPHAEVHAL 58

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AGE ARGA  YVTLEPCSH+G++PPCA  ++E G+ RV V + DP+ +VSGRG++ L 
Sbjct: 59  RQAGELARGADVYVTLEPCSHFGKTPPCADALVEAGVGRVFVGMVDPNPKVSGRGIERLR 118

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI +V  + E+E +     ++         + LK A++ D     A   S  IT   S
Sbjct: 119 VAGIEVVTGIREAECRRLNEPFVKHVTTGLPFVILKSAMTMDGKTATASGDSRWITNEKS 178

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  VH LR+  DAI+VG+GTVLADDP+LT R+   +   P+R+++D   ++   ++++  
Sbjct: 179 RRYVHKLRSMVDAIMVGVGTVLADDPQLTARIP--RGKDPVRVVVDSSLRIPSGARMLHQ 236

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295
              A  ++ T ++D    +        ++ C       DL+ LL  L  RGV S+L+EGG
Sbjct: 237 ESPATTVVATVSEDRNRIVKLESAGAEVLRCHAVMGRIDLRDLLARLGARGVQSILLEGG 296

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDV 350
           + +A   + + L+D  +L+ +   +G             E+         V    FG DV
Sbjct: 297 SELAGEALRAGLIDKCVLFYAPKFLGGAAGLGLFGGPSAERMDGCCRLKDVSVRRFGDDV 356

Query: 351 CLEYIGKNLCL 361
            +E   ++LCL
Sbjct: 357 MIEAYPEDLCL 367


>gi|289577285|ref|YP_003475912.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter italicus
           Ab9]
 gi|289526998|gb|ADD01350.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter italicus
           Ab9]
          Length = 360

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 118/329 (35%), Positives = 179/329 (54%), Gaps = 7/329 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M  AL  +    G T+ NP V  +IVK+G +IG G   Y G PHAEV AL+ A E+ 
Sbjct: 2   EEYMKRALTLAEKGWGYTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVEDV 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           +G+T +VTLEPCSHYG++PPC + II+ GI++V + ++DP+ +VSG G++ L + GI V 
Sbjct: 62  KGSTMFVTLEPCSHYGKTPPCVEEIIKSGIKKVYIAMEDPNPKVSGNGIKRLKEAGIEVH 121

Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             MME E +     +      K   + LK A+S D  I      S  IT   S+   H +
Sbjct: 122 VGMMEKEARKLNEIFFKYITTKFPFVILKSAMSIDGKIACYNGNSKWITNEKSRKFAHKI 181

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R +  AI+VG+ TV+ D+P LT RL G    +P+RII+D   ++ L+S +I+      +I
Sbjct: 182 RGRVSAIMVGVNTVIKDNPMLTTRLEGY--KNPVRIIVDSRGRIPLNSNVIRDKTAKTII 239

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             TE             +I +I     +    LK+L+  L  RG+ S+L+EGG  +  S 
Sbjct: 240 ATTELMPNNKRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNWSA 299

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEE 331
               +VD ++ + S  +IG     +P+E 
Sbjct: 300 FKEGIVDKVMFFISPRIIGGKNALTPVEG 328


>gi|320538258|ref|ZP_08038144.1| riboflavin biosynthesis protein RibD [Treponema phagedenis F0421]
 gi|320144885|gb|EFW36615.1| riboflavin biosynthesis protein RibD [Treponema phagedenis F0421]
          Length = 362

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 121/353 (34%), Positives = 180/353 (50%), Gaps = 12/353 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL+F++   G TS NP V  +IVK+G +IG G     G PHAE  AL    E   GA
Sbjct: 1   MRTALQFAKKGAGWTSPNPMVGAVIVKNGKIIGSGFHERYGEPHAERNALRACTETPAGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPC H+G+ PPC   ++E GI RVV+   DP+  V G+G++ L + GI + + +
Sbjct: 61  TLYVTLEPCCHHGKQPPCVDAVLESGITRVVIGSADPNPLVGGKGVRRLKESGIEVSENI 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           ++ E       +      KR  + +K A++ D  I      S  IT   ++  VHL R +
Sbjct: 121 LKEECDRLNEVFFHYIQTKRPFVVMKYAMTMDGKIAAVTGNSKWITEEKAREHVHLQRHR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
             AI+VG+GTVLADDP LTCR+      +P+RII D + +  L ++II+TA   P II T
Sbjct: 181 YTAIMVGVGTVLADDPLLTCRI--KDGKNPIRIICDTNLRTPLSAQIIRTAKKVPTIIAT 238

Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
              +     A+      I+    +    DL+ L+ +L    + SLL+EGG  +  + + S
Sbjct: 239 CCTEKEKQFAYLHAGCRILTVPEKNGRVDLQNLMPMLGEEKIDSLLLEGGGTLNWAALES 298

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLE 353
            +V  +  Y +  ++G     +P+E          VR         G D  +E
Sbjct: 299 GIVQKVHAYIAPKLLGGQSAKTPVEGIGFHSPDSSVRLINSSITQLGEDFLIE 351


>gi|324328017|gb|ADY23277.1| riboflavin biosynthesis protein RibD [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 370

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 123/369 (33%), Positives = 188/369 (50%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE+
Sbjct: 3   DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +I+  ++RVV+   D +  VSG G + L + GI +
Sbjct: 63  AKGATVYVTLEPCSHFGKTPPCCESLIKKEVKRVVIATLDCNPLVSGNGKRRLEEAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+       P+R+ILD H +    S +I   L    
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVILDTHLRTPPSSHVITDGLAPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           I V ++ +     ++  +NI I     +  +++ +L +L  + + SL VEGG  V  SF+
Sbjct: 242 IFVGKDVNKEKIASYESENIVIFQMKTKQIEIQDILDLLGEKQILSLFVEGGQTVHASFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG    P+              +         G D+ +    ++
Sbjct: 302 QTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSTLQDALSLKIQEMKQIGDDIKIVAHAQS 361

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 362 EVTECLQEL 370


>gi|75907679|ref|YP_321975.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Anabaena variabilis ATCC 29413]
 gi|75701404|gb|ABA21080.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Anabaena variabilis ATCC 29413]
          Length = 396

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 117/362 (32%), Positives = 188/362 (51%), Gaps = 8/362 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           + FD R M   L  +R  +G TS NP V  ++VKDG ++G G     G PHAEV AL  A
Sbjct: 35  NDFDVRMMQRCLELARRALGRTSPNPLVGAVVVKDGEIVGEGFHPRAGEPHAEVFALRAA 94

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGAT YV LEPC+HYGR+PPC++ +I  G+ +VVV + DP+  V G G++ L   G
Sbjct: 95  GELARGATVYVNLEPCNHYGRTPPCSEGLIAAGVAKVVVGMVDPNPLVGGGGIERLRGAG 154

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + ++  +  +  +     ++ R + K+    LK A++ D  I      S  +T   ++ +
Sbjct: 155 VEVLVGVEMAACQQLNEGFVHRILHKKPLGILKYAMTLDGKIATVSGHSAWVTNPSARGE 214

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LRA  DA++VG  TV  D+P LT    G+  H+P+R+++     L +D+ + +TA  
Sbjct: 215 VHQLRAACDAVIVGGNTVRRDNPYLTSHQEGV--HNPLRVVMSRQLDLPVDAHLWETAEA 272

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             +++     +P      ++K + I+       + +++ L  RG  S+L E G  +A S 
Sbjct: 273 PTLVLTQVGANPDFQKLLQQKGVEIVELASLTPEFVMSHLYDRGFCSVLWECGGTLAASA 332

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
           I    V  I+ + +  +IG    P+P+ +   +          VR    GSD  +E    
Sbjct: 333 IAQGAVQKILAFIAPKIIGGSHAPTPVGDLGFDTMTEALILERVRWRVVGSDCLVEGYLP 392

Query: 358 NL 359
           +L
Sbjct: 393 SL 394


>gi|167038695|ref|YP_001661680.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X514]
 gi|300913745|ref|ZP_07131062.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X561]
 gi|307723238|ref|YP_003902989.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X513]
 gi|166852935|gb|ABY91344.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X514]
 gi|300890430|gb|EFK85575.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X561]
 gi|307580299|gb|ADN53698.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X513]
          Length = 360

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 120/329 (36%), Positives = 181/329 (55%), Gaps = 7/329 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M  AL  ++   G T+ NP V  +IVK+G +IG G   Y G PHAEV AL+ A E  
Sbjct: 2   EEYMKRALTLAKKGWGYTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVENV 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            G+T +VTLEPCSHYG++PPC + II+ GI+RV + ++DP+ +VSG G++ L + GI V 
Sbjct: 62  EGSTMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVH 121

Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             MME E +     ++     K   + LK A+S D  I      S  IT   S+   H +
Sbjct: 122 VGMMEKEARKLNEIFVKYITTKFPFVILKSAMSIDGKIACYNGNSKWITNEKSRKFAHKI 181

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R +  AI+VG+ TV+ D+P LT RL G    +P+RII+D   ++ LDS +I+      +I
Sbjct: 182 RGRVSAIMVGVNTVIKDNPMLTTRLEGY--KNPVRIIVDSRGRIPLDSNVIRDKTAKTII 239

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             TE     +       +I +I     +    LK+L+  L  RG+ S+L+EGG  +  S 
Sbjct: 240 ATTELMPNNVRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNWSA 299

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           +   +VD ++ + S  +IG     +P+E 
Sbjct: 300 LKEGIVDKVMFFISPRIIGGKNALTPVEG 328


>gi|297517703|ref|ZP_06936089.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli OP50]
          Length = 361

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 128/362 (35%), Positives = 184/362 (50%), Gaps = 18/362 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+A+GA
Sbjct: 1   MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI +   +
Sbjct: 61  TAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVSHGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V LLRAQ
Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLLRAQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKIIK 238
           S AIL    TVLADDP LT R + L E             P+RI++D   +++   +I++
Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHRIVQ 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
                        +D        +  +   +    DL  L+  L  + + S+ VE G  +
Sbjct: 241 QPGE--TWFARTQEDSREWPETVRTLLIPAHKGHLDLVVLMMQLGKQQINSIWVEAGPTL 298

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           A + + + LVD +I+Y +  ++G           LE+      F      + G DVCL  
Sbjct: 299 AGALLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPDVCLHL 358

Query: 355 IG 356
           +G
Sbjct: 359 VG 360


>gi|228954395|ref|ZP_04116421.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228805327|gb|EEM51920.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 373

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 190/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AG+ 
Sbjct: 6   DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 66  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 125

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 126 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTALSLDGKTATVTGESKWITGEEARADVHQ 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+       P+R++LD H +    S +I   L    
Sbjct: 186 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTW 244

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 245 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 304

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG    P+        K     +         G D+ +    +N
Sbjct: 305 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 364

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 365 EVTKCLQEL 373


>gi|206971231|ref|ZP_03232182.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH1134]
 gi|206734003|gb|EDZ51174.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH1134]
          Length = 370

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 190/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AG+ 
Sbjct: 3   DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 63  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+       P+R++LD H +    S +I   L    
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 242 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG    P+        K     +         G D+ +    +N
Sbjct: 302 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 361

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 362 EVTKCLQEL 370


>gi|30022196|ref|NP_833827.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
           cereus ATCC 14579]
 gi|228960377|ref|ZP_04122030.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229111585|ref|ZP_04241136.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock1-15]
 gi|229129391|ref|ZP_04258362.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-Cer4]
 gi|29897753|gb|AAP11028.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
           cereus ATCC 14579]
 gi|228653996|gb|EEL09863.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-Cer4]
 gi|228671967|gb|EEL27260.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock1-15]
 gi|228799401|gb|EEM46365.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 379

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 190/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AG+ 
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 72  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+       P+R++LD H +    S +I   L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 251 IIVGKDVKEEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG    P+        K     +         G D+ +    +N
Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQNALSLKIQEMKQIGDDIKIVANARN 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTKCLQEL 379


>gi|300918206|ref|ZP_07134813.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 115-1]
 gi|300414657|gb|EFJ97967.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 115-1]
          Length = 367

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
             RAQS AIL    TVLADDP LT R + L E             P+RI++D   ++  +
Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVMPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|229163049|ref|ZP_04291005.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus R309803]
 gi|228620455|gb|EEK77325.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus R309803]
          Length = 379

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 126/369 (34%), Positives = 189/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE+
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +I+ G++RVV+   D +  VSG G + L + GI +
Sbjct: 72  AKGATVYVTLEPCSHFGKTPPCCELLIKKGVQRVVIATLDCNPLVSGNGKRRLEEAGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGILEAEATLLNRFFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+       P+R+ILD H +    S +I   L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVILDTHLRTPSSSHVITDGLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +     ++  +NI I     + ++   +L +L  + + SL VEGG  V  SF+
Sbjct: 251 IIVGKDVNKEKIASYEFENIAIFQMKTKQIEVQDILDLLGEKQILSLFVEGGQTVHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG    P+              +         G D+ +    +N
Sbjct: 311 QTNNFNEIVTYISPKLIGGKDAPTLFGGNGFATLQDALSLEIQEMKQIGDDIKIVANARN 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTECLQEL 379


>gi|307137057|ref|ZP_07496413.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli H736]
          Length = 361

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 128/362 (35%), Positives = 184/362 (50%), Gaps = 18/362 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+A+GA
Sbjct: 1   MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI +   +
Sbjct: 61  TAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVSHGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V LLRAQ
Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLLRAQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKIIK 238
           S AIL    TVLADDP LT R + L E             P+RI++D   +++   +I++
Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHRIVQ 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
                        +D        +  +   +    DL  L+  L  + + S+ VE G  +
Sbjct: 241 QPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTL 298

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           A + + + LVD +I+Y +  ++G           LE+      F      + G DVCL  
Sbjct: 299 AGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHL 358

Query: 355 IG 356
           +G
Sbjct: 359 VG 360


>gi|229192323|ref|ZP_04319287.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus ATCC 10876]
 gi|228591103|gb|EEK48958.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus ATCC 10876]
          Length = 379

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 190/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AG+ 
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGIGAHLRAGEEHAEVHALQMAGQN 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 72  AKDATVYVTLEPCSHFGKTPPCCELLIERGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEQARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAIL+G+ TV+AD+P LT R+       P+R+ILD H +    S +I   L    
Sbjct: 192 YRHTHDAILIGVNTVIADNPHLTTRIPNG-GKHPIRVILDTHLRTPPSSHVITDGLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 251 IIVGKDVKKEKISSYESKNIAIFQMETKYIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG    P+        K     +         G D+ +    +N
Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTKCLQEL 379


>gi|331671959|ref|ZP_08372755.1| riboflavin biosynthesis protein RibD [Escherichia coli TA280]
 gi|331070948|gb|EGI42307.1| riboflavin biosynthesis protein RibD [Escherichia coli TA280]
          Length = 367

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 186/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
             RAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++            ++D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTHEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|327392953|dbj|BAK10375.1| riboflavin biosynthesis protein ribD [Pantoea ananatis AJ13355]
          Length = 367

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 183/367 (49%), Gaps = 18/367 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D R+M+ AL  +R     T+ NP+V C+IV+DG ++G G     G PHAEV AL  AG+ 
Sbjct: 3   DERYMARALELARRGRFTTTPNPNVGCVIVRDGQIVGEGWHQRAGEPHAEVHALRMAGDR 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI +
Sbjct: 63  ARGATAYVTLEPCSHHGRTPPCCDALIAAGVTRVVAAMQDPNPQVAGRGLHRLHQAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M  E +     +L R       I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMQEAEALNRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSPAARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLAD+P LT R + L               P+R+I+D   +++ D 
Sbjct: 183 LRAQSSAILSSSATVLADNPSLTVRWSELDSESQRLVDEAELRQPVRVIVDSQNRVTPDH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           K+I    L    ++ +  D         +    +     DL  L+ +L  R + S+ VE 
Sbjct: 243 KLI--EQLGETWLMRQQVDDRHWPETVTQIPVPLRDSQLDLVALMMVLGQRQINSVWVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           GA +A + I + LVD +I+Y +  ++G         + L +      F        G DV
Sbjct: 301 GATLAGALIQAGLVDELIVYVAPKLLGNDARGLCQLAGLTQLADAPVFAFRDIRQVGDDV 360

Query: 351 CLEYIGK 357
            L    +
Sbjct: 361 RLTLTPQ 367


>gi|260438155|ref|ZP_05791971.1| riboflavin biosynthesis protein RibD [Butyrivibrio crossotus DSM
           2876]
 gi|292809343|gb|EFF68548.1| riboflavin biosynthesis protein RibD [Butyrivibrio crossotus DSM
           2876]
          Length = 360

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/360 (34%), Positives = 185/360 (51%), Gaps = 12/360 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++   G TS NP V  +IVKDG +IG G  A  G  HAE  A++    +
Sbjct: 3   DRDYMLRAISLAKKGTGYTSPNPLVGAVIVKDGRIIGEGYHAIYGDLHAERNAIKNLTVD 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPC HYG+ PPC + I+  GI +VV+   DP+  VSGRG  +L   GI +
Sbjct: 63  AKGATIYVTLEPCCHYGKQPPCTEAILAAGITKVVIGSRDPNPLVSGRGADFLRSHGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           ++  M  E       +     EK  ++ +K A+S D  I      S  +T   S+N+V  
Sbjct: 123 IEDFMREECDELNPIFFHYITEKTPYVVMKYAMSMDGKIATRTGSSRYVTNEFSRNEVQK 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +R +   I+ GIGTVLADDP L  R+ GL   SP+RII D   ++ L+S+I +TA     
Sbjct: 183 MRHKYRGIMAGIGTVLADDPMLNTRIEGL--RSPVRIICDSELRIPLNSRICQTAGEYET 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           II   N       A     I ++         +L +L+ +L    + S+L+EGG  +  S
Sbjct: 241 IIACGNAPQNRISALEALGITVLQVPDETGKVNLTELMYVLHDMKIDSILLEGGGTLNES 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356
            + + LV+ I ++ +  VIG     SP+E   ++       F  +  + F  D+ LEY  
Sbjct: 301 MLQADLVNEIKVFIAPKVIGGALAKSPVEGLGIDDIKDAVVFKLINVEKFDDDILLEYRR 360


>gi|260588249|ref|ZP_05854162.1| riboflavin biosynthesis protein RibD [Blautia hansenii DSM 20583]
 gi|260541387|gb|EEX21956.1| riboflavin biosynthesis protein RibD [Blautia hansenii DSM 20583]
          Length = 362

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 117/353 (33%), Positives = 185/353 (52%), Gaps = 12/353 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL+ ++   G TS NP V  +IVK+G +IG+G     G  HAE  AL    E  +GA
Sbjct: 1   MKIALQLAKKGCGFTSPNPMVGAVIVKEGRIIGQGWHEKYGEAHAERNALAACTENPKGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPC HYG+ PPC   I+E GI RVV+   DP+  VSG+G+Q L ++GI + + +
Sbjct: 61  TMYVTLEPCCHYGKQPPCINAIMEAGIERVVIGSGDPNPLVSGKGIQILKKQGILVTEHI 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           ++ + +     +      KR  + +K A++ D  I      S  +TG  ++  V   R +
Sbjct: 121 LQEDCERLNEVFFHYIQTKRPFVVMKYAMTMDGKISTKTGASKWVTGETARRHVAQQRHR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
             AI+ GIGT+L DDP+LTCR+ G    +P+RII D   ++ L + ++ TA   P II T
Sbjct: 181 YAAIMAGIGTILTDDPQLTCRIEG--GKNPIRIICDTTLRIPLSANVVSTAKQIPTIIAT 238

Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
              D      + KK  +++  + R    DL++L+ +L  + + S+L+EGG  +  + ++S
Sbjct: 239 CCRDAERCALYEKKGCHVLLVEERNGHVDLEQLMYLLGEKQIDSILLEGGGTLNWAALSS 298

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLE 353
            +V  +  Y +  + G     +P+E   +       R         G D  +E
Sbjct: 299 GIVQKVQAYIAPKLFGGQAAKTPIEGEGICYPTAAFRLKNSCVLPLGEDFLIE 351


>gi|209527094|ref|ZP_03275608.1| riboflavin biosynthesis protein RibD [Arthrospira maxima CS-328]
 gi|209492434|gb|EDZ92775.1| riboflavin biosynthesis protein RibD [Arthrospira maxima CS-328]
          Length = 388

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 119/363 (32%), Positives = 184/363 (50%), Gaps = 8/363 (2%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
            VS FD + M   L  ++  +G T+ NP V C+IV+D  +IG G     G PHAE+ AL 
Sbjct: 8   SVSEFDRQMMRNCLNLAKEGLGKTAPNPLVGCVIVRDDQIIGEGFHPGPGQPHAEIFALR 67

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AGE ARGAT YV LEPC+HYGR+PPC++ +I+ G+ +VV  + DP+  V G+G+  L Q
Sbjct: 68  SAGELARGATVYVNLEPCNHYGRTPPCSEALIKAGVAKVVAGMVDPNPLVGGQGIAKLRQ 127

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI ++  + ES       A++ R + K++   LK A++ D  I      S  +TG I++
Sbjct: 128 AGIEVIVGVEESACLKLNEAFVHRIIYKQTFGILKYAMTLDGKIATDTGHSAWVTGAIAR 187

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            +VH LR   DA++VG  TV  D+P LT    G  E +P+R+++     L   +++  T+
Sbjct: 188 QEVHRLRVACDAVIVGGNTVRRDNPHLTTH--GQGEPNPLRVVMSRSLDLPSSARLWDTS 245

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
             A ++       P      RKK + ++        K+++    R   S+L E G  +A 
Sbjct: 246 EAATIVFTEVGSRPDFQEHLRKKGVEVLEFAPLTPAKVMSYFYERQFLSVLWECGGRLAS 305

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355
             I    V  I+ + +  +IG    PSP+      +     +   V     GSD  +E  
Sbjct: 306 EAITQGCVHKILAFIAPKIIGGQAAPSPVGNLGFSQMTEALSLEAVSLRAIGSDYLIEGY 365

Query: 356 GKN 358
             N
Sbjct: 366 LSN 368


>gi|296504605|ref|YP_003666305.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
           thuringiensis BMB171]
 gi|296325657|gb|ADH08585.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
           thuringiensis BMB171]
          Length = 370

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 190/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AG+ 
Sbjct: 3   DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 63  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+       P+R++LD H +    S +I   L    
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 242 IIVGKDVKEEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG    P+        K     +         G D+ +    +N
Sbjct: 302 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQNALSLKIQEMKQIGDDIKIVANARN 361

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 362 EVTKCLQEL 370


>gi|323484047|ref|ZP_08089417.1| hypothetical protein HMPREF9474_01166 [Clostridium symbiosum
           WAL-14163]
 gi|323402489|gb|EGA94817.1| hypothetical protein HMPREF9474_01166 [Clostridium symbiosum
           WAL-14163]
          Length = 370

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 114/357 (31%), Positives = 181/357 (50%), Gaps = 11/357 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M  AL  +R   GL + NP V  +IVK+G VIGRG     G PHAE  AL    E 
Sbjct: 4   DEKYMRMALSLARKGCGLAAPNPMVGAVIVKEGRVIGRGYHQKYGGPHAEQNALSSCTEP 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            +GA  YVTLEPC H G+ PPC + I++  I RVVV   DP+  V G+G++ L + G+ +
Sbjct: 64  PQGAVMYVTLEPCCHSGKQPPCVKAILQAEISRVVVGSADPNPLVGGKGIRILREHGVSV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
            + ++  E       +      +   + +K A++ D  I      S  ITG  +++ V  
Sbjct: 124 TEDILREECAKLNEVFFHYIRTEHPFVVMKYAMTMDGKIAAVTGESKWITGEAARHHVQK 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR +  AI+ G+GTV++DDP LTCR       +P+RII D   +    ++++ TA  AP 
Sbjct: 184 LRHRYTAIMAGVGTVISDDPLLTCR-GVRGGKNPVRIICDTRLRTPPAARVVATAGQAPT 242

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           +I T  DDP   + ++K   +++    +    DL++L+  L  +G+ S+L+EGG  +  +
Sbjct: 243 VIATCCDDPERHMVYQKAGCSVLTVREKNGHVDLRELMRKLGKQGIDSILLEGGGTLNWA 302

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
            + S +V     Y +  ++G     +P+E                R    G D  +E
Sbjct: 303 ALESGIVQKTEAYIAPKLLGGETSKTPVEGAGFLSPGDGIVLKNSRIIRLGEDFLIE 359


>gi|291616522|ref|YP_003519264.1| RibD [Pantoea ananatis LMG 20103]
 gi|291151552|gb|ADD76136.1| RibD [Pantoea ananatis LMG 20103]
          Length = 367

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 183/367 (49%), Gaps = 18/367 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D R+M+ AL  +R     T+ NP+V C+IV+DG ++G G     G PHAEV AL  AG+ 
Sbjct: 3   DERYMARALELARRGRFTTTPNPNVGCVIVRDGQIVGEGWHQRAGEPHAEVHALRMAGDR 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI +
Sbjct: 63  ARGATAYVTLEPCSHHGRTPPCCDALIAAGVTRVVAAMQDPNPQVAGRGLHRLHQAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M  E +     +L R       I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMQEAEALNRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSPAARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLAD+P LT R + L               P+R+I+D   +++ D 
Sbjct: 183 LRAQSSAILSSSATVLADNPSLTVRWSELDSESQRLVDEAELRQPVRVIVDSQNRVTPDH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           K+I    L    ++ +  D         +    +     DL  L+ +L  R + S+ VE 
Sbjct: 243 KLI--EQLGETWLMRQQVDDRHWPETVTQIPVPLRDSQLDLVALMMVLGQRQINSVWVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           GA +A + I + LVD +I+Y +  ++G         + L +      F        G DV
Sbjct: 301 GATLAGALIQAGLVDELIVYVAPKLLGNDARGLCQLAGLTQLADAPVFAFRDLRQVGDDV 360

Query: 351 CLEYIGK 357
            L    +
Sbjct: 361 RLTLTPQ 367


>gi|212638856|ref|YP_002315376.1| riboflavin-specific pyrimidine reductase/deaminase [Anoxybacillus
           flavithermus WK1]
 gi|212560336|gb|ACJ33391.1| Riboflavin-specific pyrimidine reductase/deaminase [Anoxybacillus
           flavithermus WK1]
          Length = 358

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 130/355 (36%), Positives = 191/355 (53%), Gaps = 9/355 (2%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D ++M  AL+ ++   G TS NP V  ++VK G ++G G     G PHAEV AL  AGE
Sbjct: 1   MDEQYMRFALQLAQSARGQTSPNPLVGAVVVKHGEIVGFGAHLKAGEPHAEVHALRMAGE 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A GAT YVTLEPCSHYGR+PPCA  +IE  ++RVVV   DP+  V+G+G++ L + GI 
Sbjct: 61  KAEGATVYVTLEPCSHYGRTPPCADLLIEKKVKRVVVATTDPNPLVAGKGIEKLKRAGID 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +++ E       +      K  ++TLK A+S D  I      S  IT   ++  VH
Sbjct: 121 VTVGVLKEEADALNEMFFHYISTKTPYVTLKYAMSLDGKIATKTGESKWITSEDARRDVH 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             R   DAI+VG+GT+LADDP LT R  G +   P+RI+LD H +  L + ++       
Sbjct: 181 RERRMHDAIVVGVGTILADDPSLTVRF-GYEGKQPIRIVLDTHLRTPLHANVVTDQKAPT 239

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            I+V ++        +    ++II  +    D+  LL  L  R V S+ VEGGA V  SF
Sbjct: 240 WIVVGQHVTEEQIKPYEHAGVHIIRMNENKIDIPFLLHELGKRNVMSIFVEGGAHVHGSF 299

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352
           ++SR V  +I Y + ++IG    PS +      +    +R      +  GSD+ +
Sbjct: 300 LHSRSVQQVIAYIAPMLIGGNEAPSAIGGEGFGRMMDALRLQVKHVERIGSDIKI 354


>gi|152976519|ref|YP_001376036.1| riboflavin biosynthesis protein RibD [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025271|gb|ABS23041.1| riboflavin biosynthesis protein RibD [Bacillus cytotoxicus NVH
           391-98]
          Length = 370

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 122/368 (33%), Positives = 194/368 (52%), Gaps = 12/368 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++VK+G ++G G     G  HAEV AL  AG  
Sbjct: 3   DQEYMKIALQLAQSTAGQTSPNPMVGAVVVKNGKIVGMGAHLRAGEEHAEVHALRMAGAH 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC   +I+  ++RVV+   D +  V+G G + L + GI +
Sbjct: 63  AKGATVYVTLEPCSHFGKTPPCCNLLIQKKVKRVVIATLDSNPLVAGNGKKKLEEAGIYV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E +     +      KR  +TLK A+S D  I      S  ITG  +++ VH 
Sbjct: 123 TTGILEEEARSLNRYFFHYMKTKRPFVTLKTAMSLDGKIATTTGESKWITGDAARDDVHH 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ T++AD+P LT RL      +P+RIILD H +  L S ++   +    
Sbjct: 183 YRHTHDAILVGVNTIIADNPSLTTRLPNG-GKNPIRIILDTHLRTPLLSHVVTDRVAPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV +N      L +  +++++   +    +++ LL++L  + + SL VEGG ++  SF+
Sbjct: 242 IIVGKNVQKDQILQYESEHVSVFQMNRGRIEIQDLLSLLGEKQILSLFVEGGQSIHASFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS-PLEEGYLEKN----FMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG    P+     G+++               G+D+ +    +N
Sbjct: 302 EANGFNEIVTYISPKLIGGKDAPTWFGGTGFIQLQDALSLQFQEITQIGNDIKVIARKRN 361

Query: 359 ---LCLQE 363
               C QE
Sbjct: 362 EVPSCSQE 369


>gi|229047804|ref|ZP_04193384.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH676]
 gi|228723596|gb|EEL74961.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH676]
          Length = 379

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 189/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AG+ 
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 72  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRTLEEARIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+       P+R++LD H +    S +I   L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 251 IIVGKDVKEEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG    P+        K               G D+ +    +N
Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQNALFLKIQEMKQIGDDIKIVANARN 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTKCLQEL 379


>gi|284051945|ref|ZP_06382155.1| riboflavin biosynthesis protein [Arthrospira platensis str. Paraca]
 gi|291567830|dbj|BAI90102.1| riboflavin biosynthesis protein RibD [Arthrospira platensis
           NIES-39]
          Length = 387

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 117/369 (31%), Positives = 185/369 (50%), Gaps = 8/369 (2%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
            VS FD + M   L  ++  +G T+ NP V C+IV+D  +IG G     G PHAE+ AL 
Sbjct: 8   SVSEFDRQMMRYCLNLAKEGLGKTAPNPLVGCVIVRDQKIIGEGYHPGPGQPHAEIFALR 67

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AGE ARGAT YV LEPC+HYGR+PPC++ +I+ G+ +VV  + DP+  V G+G+  L +
Sbjct: 68  SAGELARGATVYVNLEPCNHYGRTPPCSEALIKAGVAKVVAGMVDPNPLVGGQGIAKLCE 127

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI ++  + ES       A++ R + K++    K A++ D  I      S  +TG I++
Sbjct: 128 AGIEVIVGVEESACLKLNEAFVHRIIYKQTFGIFKYAMTLDGKIATDIGDSAWVTGAIAR 187

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            +VH LR   DA++VG  TV  D+P LT    G  E +P+R+++     L   +++  T+
Sbjct: 188 QEVHRLRVACDAVIVGGNTVRRDNPHLTTH--GQGEPNPLRVVMSRSLDLPSSARLWDTS 245

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
             A ++       P      RK+ + ++        K+++    R   S+L E G  +A 
Sbjct: 246 EAATIVFTKVGSRPDFQEHLRKRGVEVVEFAPLTPTKVMSYFYERQFLSVLWECGGRLAS 305

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355
             I    V  I+ + +  +IG    PSP+      +     +   V     GSD  +E  
Sbjct: 306 EAITQGCVHKILAFIAPKIIGGQAAPSPVGNLGFSQMTQALSLEGVSLRAIGSDYLIEGY 365

Query: 356 GKNLCLQEL 364
             N   + L
Sbjct: 366 LSNGRSRTL 374


>gi|229071616|ref|ZP_04204834.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus F65185]
 gi|228711552|gb|EEL63509.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus F65185]
          Length = 379

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 190/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AG+ 
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 72  AKDATVYVTLEPCSHFGKTPPCCELLIERGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E++  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEADAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+       P+R+ILD H +    S +I   L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVILDTHLRTPPSSHVITDGLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 251 IIVGKDVKKEKISSYESKNIAIFQMETKYIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG    P+        K     +         G D+ +    +N
Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTKCLQEL 379


>gi|326941086|gb|AEA16982.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 365

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 123/355 (34%), Positives = 190/355 (53%), Gaps = 10/355 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M  AL  ++   G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+A
Sbjct: 5   ELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQA 64

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           RGAT YVTLEPCSHYGR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++
Sbjct: 65  RGATIYVTLEPCSHYGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVL 124

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             + E E K     +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +
Sbjct: 125 VGVCEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQI 184

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R ++ AILVG  TV  D+P LT R+      +P+RIILD   ++ +++ ++        I
Sbjct: 185 RNENAAILVGANTVQKDNPSLTTRIP--NGRNPIRIILDSTLRIPMEANVVTDGEAPTWI 242

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
             T N       A     + +         +L ++L +L  +GV+SLL+EGG  V  SFI
Sbjct: 243 FTTSNHAAKKKKALENAGVKVFVTSGEKHINLHEILDVLGQKGVSSLLIEGGGEVNASFI 302

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
            ++L++ +ILY +  +IG    PS +    + K    +       D+    +GK+
Sbjct: 303 ENKLMNKLILYVAPKIIGGRLAPSFVGGTGITKMQDAIEFK----DISFTQVGKD 353


>gi|15800143|ref|NP_286155.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli O157:H7 EDL933]
 gi|15829721|ref|NP_308494.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli O157:H7 str. Sakai]
 gi|168749873|ref|ZP_02774895.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756953|ref|ZP_02781960.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4401]
 gi|168761617|ref|ZP_02786624.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768362|ref|ZP_02793369.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776283|ref|ZP_02801290.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783277|ref|ZP_02808284.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4076]
 gi|168786258|ref|ZP_02811265.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC869]
 gi|168800294|ref|ZP_02825301.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC508]
 gi|195938521|ref|ZP_03083903.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli O157:H7 str. EC4024]
 gi|208806179|ref|ZP_03248516.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815640|ref|ZP_03256819.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4045]
 gi|208822832|ref|ZP_03263150.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4042]
 gi|209395713|ref|YP_002269058.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4115]
 gi|217325532|ref|ZP_03441616.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           TW14588]
 gi|254791597|ref|YP_003076434.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli O157:H7 str. TW14359]
 gi|261223893|ref|ZP_05938174.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256393|ref|ZP_05948926.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291281320|ref|YP_003498138.1| Bifunctional deaminase-reductase, C-terminal:Riboflavin
           biosynthesis protein RibD [Escherichia coli O55:H7 str.
           CB9615]
 gi|12513266|gb|AAG54763.1|AE005220_12 bifunctional pyrimidine deaminase/reductase in pathway of
           riboflavin synthesis [Escherichia coli O157:H7 str.
           EDL933]
 gi|13359924|dbj|BAB33890.1| bifunctional pyrimidine deaminase/reductase in pathway of
           riboflavin synthesis [Escherichia coli O157:H7 str.
           Sakai]
 gi|187768260|gb|EDU32104.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015886|gb|EDU54008.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999379|gb|EDU68365.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355992|gb|EDU74411.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362505|gb|EDU80924.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368039|gb|EDU86455.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373620|gb|EDU92036.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC869]
 gi|189377412|gb|EDU95828.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC508]
 gi|208725980|gb|EDZ75581.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4206]
 gi|208732288|gb|EDZ80976.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737025|gb|EDZ84709.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157113|gb|ACI34546.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           EC4115]
 gi|209744084|gb|ACI70349.1| bifunctional pyrimidine deaminase/reductase in pathway of
           riboflavin synthesis [Escherichia coli]
 gi|209744086|gb|ACI70350.1| bifunctional pyrimidine deaminase/reductase in pathway of
           riboflavin synthesis [Escherichia coli]
 gi|209744088|gb|ACI70351.1| bifunctional pyrimidine deaminase/reductase in pathway of
           riboflavin synthesis [Escherichia coli]
 gi|209744090|gb|ACI70352.1| bifunctional pyrimidine deaminase/reductase in pathway of
           riboflavin synthesis [Escherichia coli]
 gi|209744092|gb|ACI70353.1| bifunctional pyrimidine deaminase/reductase in pathway of
           riboflavin synthesis [Escherichia coli]
 gi|217321753|gb|EEC30177.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           TW14588]
 gi|254590997|gb|ACT70358.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Escherichia coli O157:H7 str. TW14359]
 gi|290761193|gb|ADD55154.1| Bifunctional deaminase-reductase, C-terminal:Riboflavin
           biosynthesis protein RibD [Escherichia coli O55:H7 str.
           CB9615]
 gi|320192827|gb|EFW67467.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-5-phosphoribosylaminouracil
           reductase [Escherichia coli O157:H7 str. EC1212]
 gi|320638406|gb|EFX08120.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli O157:H7 str. G5101]
 gi|320643786|gb|EFX12909.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli O157:H- str. 493-89]
 gi|320649137|gb|EFX17715.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli O157:H- str. H 2687]
 gi|326341175|gb|EGD64967.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
           1044]
 gi|326346050|gb|EGD69789.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-5-phosphoribosylaminouracil
           reductase [Escherichia coli O157:H7 str. 1125]
          Length = 367

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R + L               P+RI++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDVQTQALYPQHHLRQPVRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
             I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HHIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|326390344|ref|ZP_08211903.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993621|gb|EGD52054.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 360

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 118/329 (35%), Positives = 180/329 (54%), Gaps = 7/329 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M  AL+ +    G T+ NP V  +IVK+G +IG G   Y G PHAEV AL+ A E+ 
Sbjct: 2   EEYMKRALKLAEKGWGYTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVEDV 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           +G+T +VTLEPCSHYG++PPC + II+ GI+RV + ++DP+ +VSG  ++ L + GI + 
Sbjct: 62  KGSTMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNSIKRLKEAGIEVQ 121

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             MME E +     ++     K   + LK A+S D  I      S  IT   S+   H +
Sbjct: 122 VGMMEKEARKLNEIFVKYITTKIPFVILKSAMSIDGKIACYNGNSKWITNEKSRKFAHKI 181

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R +  AI+VG+ TV+ D+P LT RL G    SP+RII+D   +  L S +I+      +I
Sbjct: 182 RGRVSAIMVGVNTVIKDNPMLTTRLEGY--KSPVRIIVDSRGRTPLASNVIRDKAAKTII 239

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             TE     +       +I +I     +    LK+L+  L  RG+ S+L+EGG  +  S 
Sbjct: 240 ATTELMPNSVRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNWSA 299

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           +   +VD ++ + S  +IG     +P+E 
Sbjct: 300 LKEGIVDKVMFFISPRIIGGKNALTPVEG 328


>gi|331651348|ref|ZP_08352373.1| riboflavin biosynthesis protein RibD [Escherichia coli M718]
 gi|331051089|gb|EGI23141.1| riboflavin biosynthesis protein RibD [Escherichia coli M718]
          Length = 367

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            +  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QEEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
             I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HHIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|24111792|ref|NP_706302.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Shigella flexneri 2a str. 301]
 gi|30061909|ref|NP_836080.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Shigella flexneri 2a str. 2457T]
 gi|24050580|gb|AAN42009.1| bifunctional pyrimidine deaminase/reductase [Shigella flexneri 2a
           str. 301]
 gi|30040153|gb|AAP15886.1| bifunctional pyrimidine deaminase/reductase [Shigella flexneri 2a
           str. 2457T]
 gi|281599746|gb|ADA72730.1| putative Pyrimidine reductase, riboflavin biosynthesis [Shigella
           flexneri 2002017]
 gi|313646969|gb|EFS11426.1| riboflavin biosynthesis protein RibD [Shigella flexneri 2a str.
           2457T]
 gi|332761693|gb|EGJ91972.1| riboflavin biosynthesis protein RibD [Shigella flexneri 2747-71]
 gi|332764291|gb|EGJ94527.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-671]
 gi|332768519|gb|EGJ98702.1| riboflavin biosynthesis protein RibD [Shigella flexneri 2930-71]
 gi|333007890|gb|EGK27366.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-218]
 gi|333022021|gb|EGK41266.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-304]
          Length = 367

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
             RAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A   + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGVLLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|118445111|ref|YP_879181.1| riboflavin biosynthesis protein RibD [Clostridium novyi NT]
 gi|118135567|gb|ABK62611.1| riboflavin biosynthesis protein RibD [Clostridium novyi NT]
          Length = 377

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 129/369 (34%), Positives = 191/369 (51%), Gaps = 14/369 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +FM  A+  S+  VG T  NP V  +IVKD  +IG+G     G  HAEV AL+ A E+  
Sbjct: 9   KFMKKAIELSKLGVGYTYPNPLVGAVIVKDNKIIGQGYHERFGGAHAEVNALKNATEDVT 68

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GAT YVTLEPCSHYG++PPCA  I++ GI+ V+V + DP+  V+GRG+  L + GI ++ 
Sbjct: 69  GATMYVTLEPCSHYGKTPPCANTIVKSGIKEVIVGMRDPNELVAGRGINILKENGIKVIV 128

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + E E K     ++     K     LK A++ D  I      S  I+  +S+  VH +R
Sbjct: 129 GVFEEEIKKINEIFIKYITTKEPFCILKTAMTLDGKIATVMGDSKWISNELSREYVHEIR 188

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            +   I+VGIGTVL DDP LT RL         RII+D   ++ L+SK++        II
Sbjct: 189 HRVAGIMVGIGTVLKDDPSLTTRLKEKTGRDATRIIVDSKGRIPLNSKVLNLDSKEKTII 248

Query: 248 VTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            T    D +     +KK   +I    +    DLK L+  L    + S+L+EGG  + +S 
Sbjct: 249 ATTKLADKLKIEEIKKKGAEVIITPIKNGKVDLKFLVIELGKMNIDSILLEGGGTLNYSA 308

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE-YIG 356
           +N  +VD +I + +  +IG     + +    ++K         +    F  DV +E Y+ 
Sbjct: 309 LNEGIVDKVISFIAPKIIGGQDAKTSVAGEGIKKISDAVTLHDIEISNFQEDVVIEGYVK 368

Query: 357 KN--LCLQE 363
           K   +C QE
Sbjct: 369 KENKVCSQE 377


>gi|229013322|ref|ZP_04170462.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides DSM 2048]
 gi|228747915|gb|EEL97780.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides DSM 2048]
          Length = 379

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 123/368 (33%), Positives = 187/368 (50%), Gaps = 12/368 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE 
Sbjct: 12  DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKDGKIVGMGAHMRAGEEHAEVHALHMAGER 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L + GI +
Sbjct: 72  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPLVSGNGKRILEEAGIKV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++ +E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLGAEATLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TVL D+P LT R+       P+R+ILD H +    S +I   L    
Sbjct: 192 YRHIHDAILVGVNTVLTDNPHLTTRIPNG-GKHPIRVILDTHLRTPPSSHVITDGLTPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++   NI +     +  +++ +L++L  + + SL VEGG  V  +F+
Sbjct: 251 IIVGKDVSKEKIASYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFVEGGQTVHANFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG    P+        K     +         G+D+ +    K+
Sbjct: 311 KTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKLQDALSLTIQEMKQIGNDIKIVATLKS 370

Query: 359 ---LCLQE 363
               CLQE
Sbjct: 371 EVTECLQE 378


>gi|218230924|ref|YP_002368914.1| riboflavin biosynthesis protein RibD [Bacillus cereus B4264]
 gi|218158881|gb|ACK58873.1| riboflavin biosynthesis protein RibD [Bacillus cereus B4264]
          Length = 370

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 124/369 (33%), Positives = 190/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AG+ 
Sbjct: 3   DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 63  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEETRIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+       P+R++LD H +    S +I   L    
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 242 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + ++ Y S  +IG    P+        K     +         G D+ +    +N
Sbjct: 302 KTNNFNEVVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 361

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 362 EVTKCLQEL 370


>gi|294498727|ref|YP_003562427.1| riboflavin biosynthesis protein RibD [Bacillus megaterium QM B1551]
 gi|294348664|gb|ADE68993.1| riboflavin biosynthesis protein RibD [Bacillus megaterium QM B1551]
          Length = 363

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 123/356 (34%), Positives = 199/356 (55%), Gaps = 10/356 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M+ AL+ ++   G T  NP V  +IV D  ++G G     G PHAE+ AL  AGE+A
Sbjct: 5   EFYMNIALQNAKATKGQTDPNPLVGSVIVNDNRIVGIGTHLKAGEPHAEIHALRMAGEQA 64

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           +GATAYVTLEPCSH+GR+ PCA+ ++E G+++VV+   DP+  V+G G++ L   GI ++
Sbjct: 65  KGATAYVTLEPCSHHGRTGPCAEALVEAGVKKVVIATLDPNPLVAGNGVKILENAGIEVI 124

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             + E E +     +    V K+  ++LK A++ D  I  A   S  IT   ++  VH L
Sbjct: 125 TGVCEEESRQMNEVFNKYIVTKKPFVSLKSAITLDGKIATASSHSKWITSEEARLDVHQL 184

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R ++  ILVG+ TV+ D+PELT R+ G    SP+RI++D   ++ L+SK+   +L    +
Sbjct: 185 RHETAGILVGVNTVIKDNPELTTRIEG--GRSPIRIVMDSKLRMPLESKLATDSLAPTWV 242

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD---LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
             ++           K+ + +      D   L+ +L+IL  + V+SLL+EGG  V  +F+
Sbjct: 243 FTSQGYSKEKKEQLEKQGVEVFVTSGEDKVNLEDMLSILGEKFVSSLLIEGGGEVNAAFL 302

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
            +RL+D ++LY +  + G    P+ LE   +EK +  V  +       +  IGK+ 
Sbjct: 303 ENRLIDKLVLYMAPKLSGGKEAPTFLEGKGVEKMWDAVDVERL----SVTSIGKDF 354


>gi|193065186|ref|ZP_03046259.1| riboflavin biosynthesis protein RibD [Escherichia coli E22]
 gi|194428808|ref|ZP_03061343.1| riboflavin biosynthesis protein RibD [Escherichia coli B171]
 gi|260842612|ref|YP_003220390.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli O103:H2 str. 12009]
 gi|192927160|gb|EDV81781.1| riboflavin biosynthesis protein RibD [Escherichia coli E22]
 gi|194413111|gb|EDX29398.1| riboflavin biosynthesis protein RibD [Escherichia coli B171]
 gi|257757759|dbj|BAI29256.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Escherichia coli O103:H2 str. 12009]
 gi|323160479|gb|EFZ46427.1| riboflavin biosynthesis protein RibD [Escherichia coli E128010]
          Length = 367

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 128/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSTQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQVLYPQQNLRQPVRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + +   LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQVGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|16272881|ref|NP_439104.1| riboflavin biosynthesis protein [Haemophilus influenzae Rd KW20]
 gi|260580033|ref|ZP_05847863.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae RdAW]
 gi|1172932|sp|P44326|RIBD_HAEIN RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
           RecName:
           Full=Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase; Includes: RecName:
           Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|1573964|gb|AAC22598.1| riboflavin biosynthesis protein (ribD) [Haemophilus influenzae Rd
           KW20]
 gi|260093317|gb|EEW77250.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae RdAW]
          Length = 372

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 128/373 (34%), Positives = 196/373 (52%), Gaps = 20/373 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           +  SS D  FM  AL  +      T+ NPSV C++VK+G ++G G     G PHAE  AL
Sbjct: 2   LEFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVAL 61

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AGE A+GATAYVTLEPC+HYGR+PPCA  +IE G+ +V+  + DP+ +V+G+GL+ LS
Sbjct: 62  AQAGENAKGATAYVTLEPCAHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLS 121

Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI     ++  + +     +L R  +    + LK+A+S D    MA   S  ITG  +
Sbjct: 122 DAGIESTVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDA 181

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228
           ++ V  +RA+S A+L    TV+ADDP L  R +   E             P+R+ILD   
Sbjct: 182 RSDVQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPENLKTEYKKEWLRQPVRVILDSQH 241

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           ++    K+  T   +PV +V+   +P     F      II+     LK+L+  L  R + 
Sbjct: 242 RIQPTHKLFLT--HSPVWLVSS--EPRDLTGFPDFCEQIIFPKENLLKELMRELGKRQIN 297

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344
           +L VE GA ++ S I+++LVD +I+Y +  ++G+          L +      +     +
Sbjct: 298 TLWVEAGANLSGSLIDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNELE 357

Query: 345 YFGSDVCLEYIGK 357
             G D+ L Y  K
Sbjct: 358 QIGDDIKLTYTPK 370


>gi|310827884|ref|YP_003960241.1| riboflavin biosynthesis protein RibD [Eubacterium limosum KIST612]
 gi|308739618|gb|ADO37278.1| riboflavin biosynthesis protein RibD [Eubacterium limosum KIST612]
          Length = 367

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 123/368 (33%), Positives = 188/368 (51%), Gaps = 13/368 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  +    G  + NP V  +IVK+G VIGRG     G PHAE  A+    E+
Sbjct: 3   DQDYMRLALEEAWKGCGFVNPNPMVGAVIVKNGCVIGRGAHERYGGPHAERNAIAHCTED 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            + AT YVTL PC H+G++PPC   ++E GIRRVV+   DP+  V+ + ++ L Q G+ +
Sbjct: 63  LQDATLYVTLTPCCHFGKTPPCTDVVLENGIRRVVIGSHDPNPLVAEKSIEILRQHGVEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +++ E      A+       R ++ +K A++ D  +  A   S  ITG +++ +VHL
Sbjct: 123 TTGILQQECDALNDAFFHFIRIHRPYVVMKYAMTMDGKVATASGKSKWITGELARERVHL 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R +  AIL GIGTVLADDP LTCR+ G     P+RI+ D   ++ L ++I+KTA     
Sbjct: 183 DRKRYAAILTGIGTVLADDPLLTCRIPG--GRDPVRIVCDTKLRIPLTAQIVKTAAKTRT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           II T + D       ++K   ++         DLK L+  L    + S+L+EGG  +  +
Sbjct: 241 IIATGSGDNKKQSLLKQKGCEVLKMTVENGRIDLKALMRRLGEMAIDSILMEGGPQMNSA 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLEYIG 356
            + S +V+ I  Y +  + G     +P+    +       R         G D+ LE   
Sbjct: 301 ALESGIVNKIQAYVAPKLFGGQQAKTPVGGTGVGSPEAAWRLSAPVITKLGQDILLESEV 360

Query: 357 KNLCLQEL 364
            + CLQEL
Sbjct: 361 VS-CLQEL 367


>gi|291562115|emb|CBL40931.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [butyrate-producing bacterium SS3/4]
          Length = 369

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 117/366 (31%), Positives = 180/366 (49%), Gaps = 20/366 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++  +G TS NP V  +IVKDG +IG G     G  HAE  A+    E 
Sbjct: 3   DRDYMLRAIELAKGGLGWTSPNPLVGAVIVKDGRIIGEGYHERCGELHAERNAIASLTES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GAT YVTLEPC HYG++PPC + I+E  I RVV+   DP+  V+G+G   L   G+ +
Sbjct: 63  AEGATLYVTLEPCCHYGKTPPCTEAILEQKIARVVIGSRDPNPLVAGKGAAILRAAGVRV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
            +  M  E       +     +K  ++ +K A++ D  I      S  ITG  ++ +V  
Sbjct: 123 EEDFMREECDALNPVFFHYITKKTPYVVMKYAMTADGKIAARTGDSKWITGESARKKVQE 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR Q   I+ GIGTVLADDP L  R+ GL   SP+RII D   ++ +DS+I+KTA     
Sbjct: 183 LRHQYMGIMAGIGTVLADDPMLNVRIPGL--KSPVRIICDSGLRIPMDSQIVKTAKEYRT 240

Query: 246 IIV--------TENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVE 293
           I+            +            +  +         DL+KL+  L  +G+ S+L+E
Sbjct: 241 IVAYAGEHSGEGCKEAEEKEEQLHTAGVETVSVPDADGRVDLRKLMEYLGKQGIDSVLLE 300

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGS 348
           GG  +  + +++ +V+ I  + +  + G  G  +P+    +      V+      +  G 
Sbjct: 301 GGGTLNDAALSAGIVNEICAFIAPKIFGGAGAKTPVSGIGVAHPAEAVKLTLRQMETIGD 360

Query: 349 DVCLEY 354
           D+ L Y
Sbjct: 361 DLMLRY 366


>gi|333010856|gb|EGK30282.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-272]
 gi|333021355|gb|EGK40608.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-227]
          Length = 367

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
             RAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++    +        +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGES--WFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A   + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGVLLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|228902621|ref|ZP_04066772.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis IBL
           4222]
 gi|228967148|ref|ZP_04128184.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228792517|gb|EEM40083.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228857062|gb|EEN01571.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis IBL
           4222]
          Length = 379

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 190/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ A + 
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMASQN 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 72  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D  I      S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKIATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+       P+R++LD H +    S +I   L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 251 IIVGKDVKKEKISSYNSKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG    P+        K     +         G D+ +    +N
Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTECLQEL 379


>gi|229031753|ref|ZP_04187746.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1271]
 gi|228729637|gb|EEL80624.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1271]
          Length = 379

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/369 (34%), Positives = 192/369 (52%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE+
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +IE  ++RVV+   D +  VSG G + L + GI +
Sbjct: 72  AKGATVYVTLEPCSHFGKTPPCCELLIEKEVKRVVIATLDCNPLVSGNGKKRLEEAGIDV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEATLLNRFFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+       P+R+ILD H +    S +IK  L+   
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVILDTHLRTPPSSHVIKDGLVPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           I V ++ +     ++  +N+ I     +  +++ LL  L  + + SL VEGG ++  SF+
Sbjct: 251 IFVGKDVNKEKIASYESENVTIFQMKTKQIEIEDLLFFLGEKQILSLFVEGGQSIHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            ++  + II Y S I+IG    P+              +         G D+ +    ++
Sbjct: 311 QTKHFNEIITYISPILIGGKDAPTLFGGNGFAALQDALSLEIQEMKQIGDDIKIVANARS 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTECLQEL 379


>gi|68249531|ref|YP_248643.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
           86-028NP]
 gi|68057730|gb|AAX87983.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
           86-028NP]
          Length = 372

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 130/373 (34%), Positives = 194/373 (52%), Gaps = 20/373 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           +  SS D  FM  AL  +      T+ NPSV C++VK+G ++G G     G PHAE  AL
Sbjct: 2   LEFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVAL 61

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AGE A+GATAYVTLEPCSHYGR+PPCA  +IE G+ +V+  + DP+ +V+G+GL+ LS
Sbjct: 62  AQAGENAKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLS 121

Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI     ++  + +     +L R  +    + LK+A+S D    MA   S  ITG  +
Sbjct: 122 DAGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDA 181

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228
           ++ V  +RA+S A+L    TVLADDP L  R +   E             P+R+ILD   
Sbjct: 182 RSDVQKMRAKSSALLSTSATVLADDPSLNVRWDEFPENLKTEYKKEWLRQPVRVILDSQH 241

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           ++    K+  T   +PV +V+     +    F      II      LK+L+  L  R + 
Sbjct: 242 RIQPTHKLFLT--HSPVWLVSSETRDLT--GFPDFCEQIILPKENLLKELMRELGKRQIN 297

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344
           +L VE GA +A S I+++LVD +I+Y +  ++G+          L +      +     +
Sbjct: 298 TLWVEAGANLAGSLIDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNELE 357

Query: 345 YFGSDVCLEYIGK 357
             G D+ L Y  K
Sbjct: 358 QIGDDIKLTYTPK 370


>gi|322377269|ref|ZP_08051761.1| riboflavin biosynthesis protein RibD [Streptococcus sp. M334]
 gi|321281982|gb|EFX58990.1| riboflavin biosynthesis protein RibD [Streptococcus sp. M334]
          Length = 366

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 119/367 (32%), Positives = 188/367 (51%), Gaps = 13/367 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G PHAE  AL+   E 
Sbjct: 3   DSKYMQLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + +
Sbjct: 63  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A++ D  I      S  ITG  ++  VH 
Sbjct: 123 TVGVLENECLNLIKSFRKYITQHVPYVFMKYAMTMDGKIATKTNHSKWITGEEARKHVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR Q  AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 183 LRHQVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SLL+EGG+ +  S
Sbjct: 241 YIATSSEDKNKMKLYKNHGCEILSIKKKGNHIDLSDLMQHLGNMQIDSLLLEGGSLMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356
            +  ++VD + +Y +  + G      P+    +      +R         G D  +E   
Sbjct: 301 ALEQQIVDELKIYIAPKIFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGDDYLIESEV 359

Query: 357 KNLCLQE 363
              C QE
Sbjct: 360 IYPCSQE 366


>gi|229019323|ref|ZP_04176149.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1273]
 gi|228742008|gb|EEL92182.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1273]
          Length = 379

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 191/368 (51%), Gaps = 12/368 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++   G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE 
Sbjct: 12  DQEYMALALQLAQGTSGQTSPNPMVGAVVVKDGKIVGMGAHMCAGEEHAEVHALHMAGER 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L + GI +
Sbjct: 72  AKGATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPLVSGNGKRRLEETGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEATLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESQWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TVL D+P LT R+       P+R+ILD H +    S +I   L    
Sbjct: 192 YRHMHDAILVGVNTVLTDNPHLTTRIPNG-GKHPIRVILDTHLRTPPSSHVITDGLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +     ++   NI +     +  +++ +L++L  + + SL VEGG  V  +F+
Sbjct: 251 IIVGKDVNKEKIASYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFVEGGQTVHANFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG    P+        K     +         G+D+ +    K+
Sbjct: 311 KTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKLQDALSLTIQEMKQIGNDIKIVATLKS 370

Query: 359 ---LCLQE 363
               CLQE
Sbjct: 371 EVTECLQE 378


>gi|229180391|ref|ZP_04307734.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus 172560W]
 gi|228603138|gb|EEK60616.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus 172560W]
          Length = 379

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 189/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AG+ 
Sbjct: 12  DQEYMRIALLLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 72  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+       P+R++LD H +    S +I   L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 251 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG    P+        K     +         G D+ +    +N
Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTKCLQEL 379


>gi|308185884|ref|YP_003930015.1| bifunctional pyrimidine deaminase/reductase in pathway of
           riboflavin synthesis [Pantoea vagans C9-1]
 gi|308056394|gb|ADO08566.1| bifunctional pyrimidine deaminase/reductase in pathway of
           riboflavin synthesis [Pantoea vagans C9-1]
          Length = 366

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 130/368 (35%), Positives = 183/368 (49%), Gaps = 18/368 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D R+M+ AL  +R     T  NP+V C+IV+DG V+G G     G PHAEV AL  AGE
Sbjct: 1   MDERYMARALELARRGRFTTMPNPNVGCVIVRDGEVVGEGWHQRAGEPHAEVHALRMAGE 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +ARGATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 61  KARGATAYVTLEPCSHHGRTPPCCDALIAAGVIRVVAAMQDPNPQVAGRGLHRLHQAGID 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M  E +     +L R       I LK+  S D    MA   S  IT   ++  V 
Sbjct: 121 VSHGLMMPEAEALNRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSEAARRDVQ 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R + L           Q   P+R+I+D   +++  
Sbjct: 181 RLRAQSAAILSSSATVLADDPSLTVRWSELNTDSQALVDEQQLRQPVRVIIDSQNRVTPQ 240

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            ++I         ++    D  L  A   +    +     DL  ++ +L  R + S+ VE
Sbjct: 241 HRLISQPGE--TWLMRHQPDQQLWPADVTQIAVPLREQQLDLVAMMMLLGQRQINSVWVE 298

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            GA +A + + + LVD +I+Y +  ++G  G        L +      F        G D
Sbjct: 299 AGATLAGALLQAGLVDELIVYLAPKLLGHEGRGLCQLPGLSQLADAPAFRFSDVRQVGDD 358

Query: 350 VCLEYIGK 357
           + L    +
Sbjct: 359 LRLTLTPQ 366


>gi|218899272|ref|YP_002447683.1| riboflavin biosynthesis protein RibD [Bacillus cereus G9842]
 gi|218541932|gb|ACK94326.1| riboflavin biosynthesis protein RibD [Bacillus cereus G9842]
          Length = 370

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 190/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ A + 
Sbjct: 3   DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMASQN 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 63  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D  I      S  ITG  ++  VH 
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKIATVTGESKWITGEEARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+       P+R++LD H +    S +I   L    
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 242 IIVGKDVKKEKISSYNSKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG    P+        K     +         G D+ +    +N
Sbjct: 302 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 361

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 362 EVTECLQEL 370


>gi|261346387|ref|ZP_05974031.1| riboflavin biosynthesis protein RibD [Providencia rustigianii DSM
           4541]
 gi|282565705|gb|EFB71240.1| riboflavin biosynthesis protein RibD [Providencia rustigianii DSM
           4541]
          Length = 371

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 128/372 (34%), Positives = 194/372 (52%), Gaps = 21/372 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   D  +M+ A   +R     TS NP+V C+IV+DG V+G G     G PHAEV AL  
Sbjct: 1   MLEQDRIYMARAFELARKGRFTTSPNPNVGCVIVRDGEVVGEGYHQKAGEPHAEVHALRM 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG++ARGATAYVTLEPCSH+GR+PPCA+ +I+ G+ RVV  + DP+ +V+GRGL  LSQ 
Sbjct: 61  AGDKARGATAYVTLEPCSHHGRTPPCAEALIKAGVSRVVASMQDPNPQVAGRGLYMLSQA 120

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI     ++  + +     +L R      +I LK+A S D    +    S  IT   ++ 
Sbjct: 121 GIETSSNILLEQAEALNRGFLKRMRTAFPYIQLKLAASLDGKTALESGESKWITSPAARK 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V +LRAQ+ AIL    TV+ADDP LT R + L               P+RI+LD H K+
Sbjct: 181 DVQVLRAQASAILSTSNTVIADDPALTVRWSELPSDIQQEYPEDQLRQPIRIVLDRHNKV 240

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD-CRDLKKLLTILVGRGVTS 289
           + + ++  T L     ++    D  +    + + + I+  +   DL  L+  L  R + S
Sbjct: 241 TPEHQV--TQLAGECWLIRPTPDNEVTWQGQVEQVPILADENGIDLVILMMQLAKRNINS 298

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI-----PSPLEEGYLEKNFMCVRRD 344
           + VE G  +A S +   LVD +I+Y +  ++G+        P+ L+      NF     +
Sbjct: 299 IWVEAGPTLAGSLLKLGLVDELIVYIAPKLLGDTARGLVNFPA-LKSLSDAPNFEFTDVE 357

Query: 345 YFGSDVCLEYIG 356
             G+D+ +    
Sbjct: 358 KVGNDLRVRLRP 369


>gi|238765182|ref|ZP_04626114.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
           kristensenii ATCC 33638]
 gi|238696616|gb|EEP89401.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
           kristensenii ATCC 33638]
          Length = 369

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     TS NP+V C++V+DG ++G G     G PHAEV AL  AGE+
Sbjct: 4   DEFYMARAFELARLGRFTTSPNPNVGCVVVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSH+GR+PPCA  ++  G++RVV  + DP+ +V+GRGL  L Q G+ +
Sbjct: 64  ARGATAYVTLEPCSHHGRTPPCADALLTAGVKRVVAAMQDPNPQVAGRGLYKLKQAGVEV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP LT R   L               P+R+I+D H +++ + 
Sbjct: 184 FRAQSSAILSTSATVLADDPSLTVRWQELDADTQARYPQDTLRQPVRVIVDSHNRVTPEH 243

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           K+I+     P  +     D        ++ +   + +  DL  L+  L  R + S+ VE 
Sbjct: 244 KVIQQD--GPCWLARVEADEQSWPNNVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           G   A + + + +VD +ILY +  ++G         + L        F+       G D+
Sbjct: 302 GPQFAGALLQAGVVDELILYIAPKLLGSDARGLCQLAGLTSLSDAPEFVFSDVRQLGPDL 361

Query: 351 CLEYIGK 357
            L    K
Sbjct: 362 RLRLKPK 368


>gi|229134920|ref|ZP_04263727.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST196]
 gi|228648595|gb|EEL04623.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST196]
          Length = 379

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 188/368 (51%), Gaps = 12/368 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE 
Sbjct: 12  DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKDGKIVGMGAHMRAGEEHAEVHALHMAGER 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L + GI +
Sbjct: 72  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPLVSGNGKRKLEEVGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEATLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TVL D+P LT R+       P+R+ILD H +    S +I   L    
Sbjct: 192 YRHIHDAILVGVNTVLTDNPHLTTRIPNG-GKHPIRVILDTHLRTPPSSHVITDGLTPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +      +   NI +     +  +++ +L++L  + + SL VEGG  V  +F+
Sbjct: 251 IIVGKDVNKEKIAPYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFVEGGQTVHANFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG    P+        K     +         G+D+ +    K+
Sbjct: 311 KTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKLQDALSLTIQEMKQIGNDIKIVATLKS 370

Query: 359 ---LCLQE 363
               CLQE
Sbjct: 371 EVTECLQE 378


>gi|229025568|ref|ZP_04181976.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1272]
 gi|228735750|gb|EEL86337.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1272]
          Length = 370

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 191/368 (51%), Gaps = 12/368 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ ++   G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE 
Sbjct: 3   DQEYMALALQLAQGTSGQTSPNPMVGAVVVKDGKIVGMGAHMCAGEEHAEVHALHMAGER 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L + GI +
Sbjct: 63  AKGATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPLVSGNGKRRLEETGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 123 TTGVLEAEATLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESQWITGEEARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TVL D+P LT R+       P+R+ILD H +    S +I   L    
Sbjct: 183 YRHMHDAILVGVNTVLTDNPHLTTRIPNG-GKHPIRVILDTHLRTPPSSHVITDGLAPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +     ++   NI +     +  +++ +L++L  + + SL VEGG  V  +F+
Sbjct: 242 IIVGKDVNKEKIASYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFVEGGQTVHANFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG    P+        K     +         G+D+ +    K+
Sbjct: 302 KTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKLQDALSLTIQEMKQIGNDIKIVATLKS 361

Query: 359 ---LCLQE 363
               CLQE
Sbjct: 362 EVTECLQE 369


>gi|194432577|ref|ZP_03064863.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 1012]
 gi|194419138|gb|EDX35221.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 1012]
 gi|332086036|gb|EGI91200.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 155-74]
          Length = 367

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LR+QS AIL    TVLADDP L  R + L E             P+RI++D   +++  
Sbjct: 182 RLRSQSHAILTSSATVLADDPALIVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPG 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 360 VCLHLVG 366


>gi|281491487|ref|YP_003353467.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Lactococcus lactis subsp. lactis KF147]
 gi|281375205|gb|ADA64718.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase/
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Lactococcus lactis subsp. lactis KF147]
          Length = 362

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 118/357 (33%), Positives = 188/357 (52%), Gaps = 12/357 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++   G  + NP V  LIVK+G +IG+G     G  HAE+ A ++  E 
Sbjct: 4   DEYYMDLAIVLAKKGGGNVNPNPQVGALIVKEGRIIGQGYHEKYGEAHAEINAFKDCNES 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GAT YVTLEPC+H G+ PPC + II+  I+RVV+   DP+  VSG+G++ + + GI +
Sbjct: 64  PEGATLYVTLEPCAHQGKQPPCFEAIIKNRIKRVVIGHLDPNPLVSGKGIKAMKEAGIEV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E +     +     +   ++ +K A++ D  I  +   S  ITG I++ +VH 
Sbjct: 124 SINVLEKECEELNKIFFYYVSQGLPYVMMKYAMTLDGKIATSAGQSKWITGEIARQKVHQ 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R++  AI++G+ T++ DDP+L+ RL      +P+RII D H +  L SKI+ TA     
Sbjct: 184 DRSRFMAIMIGVETLILDDPQLSVRLE--NGKNPIRIICDTHLRSPLASKIVSTASEIST 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           II T   DP     F K    II   C     +LK+L   L  +G+ S+++EGG  +  S
Sbjct: 242 IIATAESDPEKQAPFLKVGCEIILVSCLEGRLNLKELTKKLGEKGIDSIILEGGGTLNAS 301

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
            + + ++  +  Y +  + G    PSP+E   +E           +  Y G D+ LE
Sbjct: 302 ALKAGIIQKVQTYIAPKIFGGKEAPSPVEGHGIEHPNQAYLLEGAQITYLGEDILLE 358


>gi|307265418|ref|ZP_07546974.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919532|gb|EFN49750.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 360

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 120/329 (36%), Positives = 183/329 (55%), Gaps = 7/329 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M  AL  +    G T+ NP V  +IVK+G +IG G   Y G PHAEV AL+ A E+ 
Sbjct: 2   EEYMKRALTLAEKGWGYTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVEDV 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           +G+T +VTLEPCSHYG++PPC + II+ GI+RV + ++DP+ +VSG G++ L + GI V 
Sbjct: 62  KGSTMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVH 121

Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             MME + +     ++     K   + LK A+S D  I      S  IT   S+   H +
Sbjct: 122 VGMMEKDARKLNEIFVKYITTKFPFVILKSAMSIDGKIACYNGNSKWITNEKSRKFAHKI 181

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R +  AI+VG+ TV+ D+P LT RL G    +P+RII+D   ++ LDS +I+      +I
Sbjct: 182 RGRVSAIMVGVNTVINDNPMLTTRLEGY--KNPVRIIVDSRGRIPLDSNVIRDKTAKTII 239

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             TE     +       +I +I     +    LK+L+  L  RG+ S+L+EGG  +  S 
Sbjct: 240 ATTELMPNNVRKKLEDMDIEVIILKNDNRKVPLKELMIKLGERGIDSVLIEGGGTLNWSA 299

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           +  R+VD ++ + S  +IG     +P+E 
Sbjct: 300 LKERIVDKVMFFISPRIIGGKNALTPVEG 328


>gi|228941263|ref|ZP_04103816.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974195|ref|ZP_04134765.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228980786|ref|ZP_04141091.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis Bt407]
 gi|228778955|gb|EEM27217.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis Bt407]
 gi|228785535|gb|EEM33544.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818422|gb|EEM64494.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 379

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 188/369 (50%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AG+ 
Sbjct: 12  DQEYMRIALLLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 72  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+       P+R++LD H +    S +I   L    
Sbjct: 192 YRHIHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 251 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG    P+        K               G D+ +    +N
Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALTLKIQEMKQIGDDIKIVANARN 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTKCLQEL 379


>gi|298490230|ref|YP_003720407.1| riboflavin biosynthesis protein RibD ['Nostoc azollae' 0708]
 gi|298232148|gb|ADI63284.1| riboflavin biosynthesis protein RibD ['Nostoc azollae' 0708]
          Length = 375

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 116/364 (31%), Positives = 184/364 (50%), Gaps = 9/364 (2%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S FD+  M   L+ +R  +G TS NP V  ++V+D  ++G G     G PHAEV AL
Sbjct: 11  MVGSEFDSLMMQWCLQLARRALGRTSPNPLVGAVVVQDREIVGEGFHPRAGEPHAEVFAL 70

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE+A GAT YV+LEPC+HYGR+PPC++ +I  GI +VVV + DP+  V+G G+  L 
Sbjct: 71  RAAGEKAHGATIYVSLEPCNHYGRTPPCSEGLIAAGISKVVVGMVDPNPLVAGGGIARLR 130

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI ++  + E+  +     ++ R V K+    LK A++ D  I  +   S  IT   +
Sbjct: 131 AAGIEVLVGVEEAACRQLNEGFIHRIVHKQPLGILKYAMTLDGKIATSSGHSAWITNPDA 190

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +++VH LRA  DA++VG  TV  D+P LTC       ++P+R+++     L  D+++   
Sbjct: 191 RSEVHQLRAACDAVIVGGNTVRQDNPFLTCH--QWDGNNPLRVVMSRSLNLPEDARLWNV 248

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           A    +++      P        K + +I         ++  L   G  S+L E G  +A
Sbjct: 249 AEAPTLVLTEVGSSPDFQKMLHGKGVEVIELPLLTPDHVMAHLYELGFCSVLWECGGTLA 308

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLE- 353
            S I    V  I+ + +  +IG    P+P+ +         +R         GSD  +E 
Sbjct: 309 ASAIAQGAVQKILAFIAPKIIGGSHAPTPVGDLGFTTMTEALRLEKVCWRVVGSDCLVEG 368

Query: 354 YIGK 357
           Y+ +
Sbjct: 369 YLPE 372


>gi|123443368|ref|YP_001007342.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122090329|emb|CAL13195.1| riboflavin biosynthesis protein RibD [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 369

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     TS NP+V C++V+DG ++G G     G PHAEV AL  AGE+
Sbjct: 4   DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSH+GR+PPCA  ++  G++RVV  + DP+ +V+GRGL  L Q G+ +
Sbjct: 64  ARGATAYVTLEPCSHHGRTPPCADALLTAGVKRVVAAMQDPNPQVAGRGLYKLKQAGVEV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP LT R   L               P+RII+D H +++   
Sbjct: 184 FRAQSSAILSTSATVLADDPALTVRWQELDAQTQALYPQDALRQPVRIIVDSHNRVTPQH 243

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           K+I+     P  +     D        ++ +   + +  DL  L+  L  R + S+ VE 
Sbjct: 244 KVIQQD--GPCWLARVEADEQSWPNNVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           G   A + + + +VD +ILY +  ++G         + L +      F+       G D+
Sbjct: 302 GPQFAGALLQAGVVDELILYIAPKLLGSDARGLCQLTGLTQLSDAPEFVFSEVRQVGPDL 361

Query: 351 CLEYIGK 357
            L    K
Sbjct: 362 RLRLKPK 368


>gi|148826406|ref|YP_001291159.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae PittEE]
 gi|229846003|ref|ZP_04466115.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae 7P49H1]
 gi|148716566|gb|ABQ98776.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae PittEE]
 gi|229811007|gb|EEP46724.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae 7P49H1]
 gi|309973554|gb|ADO96755.1| Riboflavin biosynthesis protein RibD [Haemophilus influenzae R2846]
          Length = 372

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 128/373 (34%), Positives = 194/373 (52%), Gaps = 20/373 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           +  SS D  FM  AL  +      T+ NPSV C++VK+G ++G G     G PHAE  AL
Sbjct: 2   LEFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVAL 61

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AGE ++GATAYVTLEPCSHYGR+PPCA  +IE G+ +V+  + DP+ +V+G+GL+ LS
Sbjct: 62  AQAGENSKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLS 121

Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI     ++  + +     +L R  +    + LK+A+S D    MA   S  ITG  +
Sbjct: 122 DAGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDA 181

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228
           ++ V  +RA+S A+L    TV+ADDP L  R +   E             P+R+ILD   
Sbjct: 182 RSDVQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQH 241

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           ++    K+  T   +PV +V+     +    F      II      LK+L+  L  R + 
Sbjct: 242 RIQPTHKLFLT--HSPVWLVSSETRDLT--GFPDFCEQIILPKENLLKELMRELGKRQIN 297

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344
           +L VE GA +A S I+++LVD +I+Y +  ++G+          L +      +     +
Sbjct: 298 TLWVEAGANLAGSLIDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNELE 357

Query: 345 YFGSDVCLEYIGK 357
             G D+ L Y  K
Sbjct: 358 QIGDDIKLTYTPK 370


>gi|148828121|ref|YP_001292874.1| hypothetical protein CGSHiGG_08285 [Haemophilus influenzae PittGG]
 gi|148719363|gb|ABR00491.1| hypothetical protein CGSHiGG_08285 [Haemophilus influenzae PittGG]
          Length = 372

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 129/373 (34%), Positives = 195/373 (52%), Gaps = 20/373 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           +  SS D  FM  AL  +      T+ NPSV C++VK+G ++G G     G PHAE  AL
Sbjct: 2   LEFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVAL 61

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AGE A+GATAYVTLEPC+HYGR+PPCA  +IE G+ +V+  + DP+ +V+G+GL+ LS
Sbjct: 62  AQAGENAKGATAYVTLEPCAHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLS 121

Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI     ++  + +     +L R  +    + LK+A+S D    MA   S  ITG  +
Sbjct: 122 DAGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDA 181

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228
           ++ V  +RA+S A+L    TV+ADDP L  R +   E             P+R+ILD   
Sbjct: 182 RSDVQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPETLKTEYKKEDLRQPVRVILDSQH 241

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           ++    K+  T   +PV +V+   +P     F      II      LK+L+  L  R + 
Sbjct: 242 RIQPTHKLFLT--HSPVWLVSS--EPRDLTGFPDFCEQIILPKENLLKELMRELGKRQIN 297

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344
           +L VE GA +A S I+++LVD +I+Y +  ++G+          L +      +     +
Sbjct: 298 TLWVEAGANLAGSLIDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNELE 357

Query: 345 YFGSDVCLEYIGK 357
             G D+ L Y  K
Sbjct: 358 QIGDDIKLTYTPK 370


>gi|261822528|ref|YP_003260634.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Pectobacterium wasabiae WPP163]
 gi|261606541|gb|ACX89027.1| riboflavin biosynthesis protein RibD [Pectobacterium wasabiae
           WPP163]
          Length = 369

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 129/373 (34%), Positives = 189/373 (50%), Gaps = 21/373 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           MP    DA +M+ AL  +R     T+ NP+V C+IV+DG ++G G     G PHAEV AL
Sbjct: 1   MPQ---DAFYMARALELARRGRFTTAPNPNVGCVIVRDGEIVGEGYHFRAGEPHAEVHAL 57

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE ARGATAYVTLEPCSH+GR+PPCA  +I  G+ RVV  + DP+ +V+GRGL  L 
Sbjct: 58  RMAGERARGATAYVTLEPCSHHGRTPPCADALIAAGVSRVVAAMQDPNPQVAGRGLHRLQ 117

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           Q GI +   +M +E +     +L R      ++ LK+A S D    MA   S  IT   +
Sbjct: 118 QSGITVSHGVMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQA 177

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228
           +  V   RA+S AIL    TVLADDP LT R   L               P+R+I+D   
Sbjct: 178 RQDVQRFRAESAAILSSSATVLADDPSLTVRWLELDADVQKRYSEADLRQPVRVIVDSQQ 237

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           +++   +++         +     D        ++ +   +    DL  L+ +L  R + 
Sbjct: 238 RVTPQHRVVSQPGE--TWLARVQADEQAWPQGVEQVMLPQHNGGVDLVALMMVLGRRQIN 295

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344
           S+ VE GA++A + +N+ +VD +I+Y +  ++GE          L++      F  V   
Sbjct: 296 SVWVEAGASLAGALLNAGVVDELIVYLAPKLLGENARALCLLPGLDQLSQAPEFDIVEVR 355

Query: 345 YFGSDVCLEYIGK 357
             G D+ L    K
Sbjct: 356 QIGPDLRLRLKPK 368


>gi|167036452|ref|YP_001664030.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320114877|ref|YP_004185036.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166855286|gb|ABY93694.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319927968|gb|ADV78653.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 360

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 117/329 (35%), Positives = 181/329 (55%), Gaps = 7/329 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M  AL  +    G T+ NP V  +IVK+G +IG G   Y G PHAEV AL+ A E+ 
Sbjct: 2   EEYMKRALTLAEKGWGHTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVEDV 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           +G+T +VTLEPCSHYG++PPC + II+ GI+RV + ++DP+ +VSG G++ L + GI V 
Sbjct: 62  KGSTMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVH 121

Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +ME + +     ++     K   + +K A+S D  I      S  IT   S+   H +
Sbjct: 122 VGIMEKKARKLNEIFVKYITTKFPFVIVKSAMSIDGKIACYNGNSKWITNEKSRKFAHKI 181

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R +  AI+VG+ TV+ D+P LT RL G    SP+RII+D   ++  DS +I+      +I
Sbjct: 182 RGRVSAIMVGVNTVIKDNPMLTTRLEGY--KSPVRIIVDSRGRIPFDSNVIRDKTAKTII 239

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             TE     +       +I +I     +    LK+L+  L  RG+ S+L+EGG  +  S 
Sbjct: 240 ATTELMPNNVRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNWSA 299

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           +   +VD ++ + S  +IG     +P+E 
Sbjct: 300 LKEGIVDKVMFFISPRIIGGKNALTPVEG 328


>gi|256751435|ref|ZP_05492313.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256749654|gb|EEU62680.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 360

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 117/329 (35%), Positives = 180/329 (54%), Gaps = 7/329 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M  AL  +    G T+ NP V  +IVK+G +IG G   Y G PHAEV AL+ A E+ 
Sbjct: 2   EEYMKRALTLAEKGWGHTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVEDV 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           +G+T +VTLEPCSHYG++PPC + II+ GI+RV + ++DP+ +VSG G++ L + GI V 
Sbjct: 62  KGSTMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVH 121

Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +ME + +     ++     K   + +K A+S D  I      S  IT   S+   H +
Sbjct: 122 VGIMEKKARKLNEIFVKYITTKFPFVIVKSAMSIDGKIACYNGNSKWITNEKSRKFAHKI 181

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R +  AI+VG+ TV+ D+P LT RL G    SP+RII+D   ++  DS +I+      +I
Sbjct: 182 RGRVSAIMVGVNTVIKDNPMLTTRLEGY--KSPVRIIVDSRGRIPFDSNVIRDKTAKTII 239

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             TE     +       +I +I     +    LK+L+  L  RG+ S+L+EGG  +  S 
Sbjct: 240 ATTELMPNNVRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNWSL 299

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEE 331
               +VD ++ + S  +IG     +P+E 
Sbjct: 300 FKEGIVDKVMFFISPRIIGGKNALTPVEG 328


>gi|229174787|ref|ZP_04302310.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus MM3]
 gi|228608695|gb|EEK65994.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus MM3]
          Length = 379

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/369 (34%), Positives = 191/369 (51%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VK+G ++G G     G  HAEV AL  AGE+
Sbjct: 12  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKEGNIVGIGAHLRAGEEHAEVHALHMAGEK 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +I+ G++RVV+   D +  VSG G + L + GI +
Sbjct: 72  AKGATVYVTLEPCSHFGKTPPCCELLIKKGVKRVVIATLDCNPLVSGTGKRRLEEAGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 ATGVLETEATLLNRFFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+       P+R+ILD H +    S +I   L    
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVILDTHLRTPPSSHVITDGLAPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +     ++  +NI I     +  ++K LL  L  + + SL VEGG  V  SF+
Sbjct: 251 IIVGKDVNKEKIASYESENIAIFQMKTKHIEIKDLLFFLGEKQILSLFVEGGQTVHASFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            ++ ++ I+ Y S  +IG    P+              +         G D+ +    ++
Sbjct: 311 QTKHLNEIVTYISPKLIGGKDAPTLFGGNGFAALHDALSLEIQEMKQVGDDIKIVANARS 370

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 371 EVTECLQEL 379


>gi|297543534|ref|YP_003675836.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296841309|gb|ADH59825.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 360

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 120/329 (36%), Positives = 180/329 (54%), Gaps = 7/329 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M  AL  ++   G T+ NP V  +IVK+G +IG G   Y G PHAEV AL+ A E  
Sbjct: 2   EEYMKRALTLAKKGWGYTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVENV 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            G+T +VTLEPCSHYG++PPC + II+ GI+RV + ++DP+ +VSG G++ L + GI V 
Sbjct: 62  EGSTMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVH 121

Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             MME E +     ++     K   + LK A+S D  I      S  IT   S+   H +
Sbjct: 122 VGMMEKEARKLNEIFVKYITTKFPFVILKSAMSIDGKIACYNGNSKWITNGKSREFAHKI 181

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R +  AI+VG+ TV+ D+P LT RL G    +P+RII+D   ++ LDS +I+      +I
Sbjct: 182 RGRVSAIMVGVNTVIKDNPMLTTRLEGY--KNPVRIIVDSRGRIPLDSNVIRDKTAKTII 239

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             TE     +       +I +I     +    LK+L+  L  RG+ S+L+EGG  +  S 
Sbjct: 240 ATTELMPNNVRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNWSA 299

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEE 331
               +VD ++ + S  +IG     +P+E 
Sbjct: 300 FKEGIVDKVMFFISPRIIGGKNALTPVEG 328


>gi|326941884|gb|AEA17780.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 370

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 188/369 (50%), Gaps = 12/369 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AG+ 
Sbjct: 3   DQEYMRIALLLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L +  I +
Sbjct: 63  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TV+AD+P LT R+       P+R++LD H +    S +I   L    
Sbjct: 183 YRHIHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++       ++  KNI I   + +  +++ LL+ L  + + SL VEGG ++  SF+
Sbjct: 242 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG    P+        K               G D+ +    +N
Sbjct: 302 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALTLKIQEMKQIGDDIKIVANARN 361

Query: 359 ---LCLQEL 364
               CLQEL
Sbjct: 362 EVTKCLQEL 370


>gi|50120065|ref|YP_049232.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Pectobacterium atrosepticum SCRI1043]
 gi|49610591|emb|CAG74036.1| riboflavin biosynthesis protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 369

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 131/373 (35%), Positives = 188/373 (50%), Gaps = 21/373 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           MP    D  +M+ AL  +R     T+ NP+V C+IV+DG ++G G     G PHAEV AL
Sbjct: 1   MPQ---DELYMARALELARRGRFTTAPNPNVGCVIVRDGEIVGEGYHFRAGEPHAEVHAL 57

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE ARGATAYVTLEPCSH+GR+PPCA  +I  G+ RVV  + DP+ +V+GRGL  L 
Sbjct: 58  RMAGERARGATAYVTLEPCSHHGRTPPCADALITAGVSRVVAAMQDPNPQVAGRGLHRLQ 117

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           Q GI +   +M +E +     +L R      ++ LK+A S D    MA   S  IT   +
Sbjct: 118 QAGITVSHGLMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQA 177

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228
           +  V   RA+S AIL    TVLADDP LT R + L               P+R+I+D   
Sbjct: 178 RQDVQRFRAESAAILSSSTTVLADDPSLTVRWSELDADVQKHYSEADLRQPVRVIVDSQQ 237

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           +++   +II         +     D        +  +   +    DL  L+ +L  R + 
Sbjct: 238 RVTPQHRIISQPGE--TWLARVQADEQAWPQNVEHLMLPQHNGGVDLVALMMVLGRRQIN 295

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRD 344
           S+ VE GA++A + +N+ +VD +I+Y +  ++GE      L  G  +      F  V   
Sbjct: 296 SVWVEAGASLAGALLNACVVDELIVYLAPKLLGENARSLCLLPGLTQLSQAPEFDIVEVR 355

Query: 345 YFGSDVCLEYIGK 357
             G D+ L    K
Sbjct: 356 QVGPDLRLRLKPK 368


>gi|282900583|ref|ZP_06308525.1| Riboflavin biosynthesis protein RibD [Cylindrospermopsis
           raciborskii CS-505]
 gi|281194383|gb|EFA69338.1| Riboflavin biosynthesis protein RibD [Cylindrospermopsis
           raciborskii CS-505]
          Length = 385

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 111/356 (31%), Positives = 177/356 (49%), Gaps = 8/356 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S FDA  M   L  +R  +G TS NP V  ++VKDG ++G G     G PHAEV AL  A
Sbjct: 14  SEFDALMMQRCLELARLALGRTSPNPLVGAVVVKDGEIVGEGFHPRAGEPHAEVFALRAA 73

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGAT YV+LEPC+HYGR+PPC+  +I  G+ +VVV + DP+  V+G G+  L   G
Sbjct: 74  GERARGATIYVSLEPCNHYGRTPPCSLSLINAGVAKVVVGMVDPNPLVAGAGIARLRAAG 133

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I ++  + E   +     ++ R + ++    LK A++ D  I      S  IT   ++++
Sbjct: 134 IEVIIGVEEEACQKLNEGFVYRVLHQKPLGILKYAMTLDGKIASNSGHSTWITNSQARSE 193

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LRA  DA++VG  TV  D+P LT        ++P+R+++     L  ++ +  T + 
Sbjct: 194 VHQLRAACDAVIVGGNTVRRDNPHLTTHQQ--TGYNPLRVVMSASLNLPENAHLWDTRVA 251

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             +++  E   P       +K + ++         ++  L  RG  ++L E G  +A   
Sbjct: 252 PTLVLTQEGSSPDFQQMLLQKGVEVLELPLLTPGLVMAHLYERGFCTVLWECGGTLAARA 311

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
           I    V  ++ + +  +IG    P+P+ +  L           V     G D  +E
Sbjct: 312 IAENAVQKVLAFIAPKIIGGIDAPTPVGDLGLSSMTESLVLERVNWRTIGCDFLVE 367


>gi|319775121|ref|YP_004137609.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae F3047]
 gi|329122965|ref|ZP_08251536.1| riboflavin biosynthesis protein RibD [Haemophilus aegyptius ATCC
           11116]
 gi|317449712|emb|CBY85919.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae F3047]
 gi|327471896|gb|EGF17336.1| riboflavin biosynthesis protein RibD [Haemophilus aegyptius ATCC
           11116]
          Length = 372

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/373 (34%), Positives = 195/373 (52%), Gaps = 20/373 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           +  SS D  FM  AL  +      T+ NPSV C++VK+G ++G G     G PHAE  AL
Sbjct: 2   LEFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVAL 61

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AGE A+GATAYVTLEPCSHYGR+PPCA  +IE G+ +V+  + DP+ +V+G+GL+ LS
Sbjct: 62  AQAGENAKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLS 121

Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI     ++  + +     +L R  +    + LK+A+S D    MA   S  ITG  +
Sbjct: 122 DAGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDA 181

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228
           ++ V  +RA+S A+L    TV+ADDP L  R +   E             P+R+ILD   
Sbjct: 182 RSDVQKMRAKSSALLSTSTTVIADDPSLNIRWDEFPENLKTEYKKEGLRQPVRVILDSQH 241

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           ++    K+  T   +PV +V+   +P     F      II      LK+L+  L  R + 
Sbjct: 242 RIQPTHKLFLT--HSPVWLVSS--EPRDLTGFPDFCEQIILPKENLLKELMRELGKRQIN 297

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344
           +L VE GA +A S I+++LVD +I+Y +  ++G+          L +      +     +
Sbjct: 298 TLWVEAGANLAGSLIDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNELE 357

Query: 345 YFGSDVCLEYIGK 357
             G D+ L Y  K
Sbjct: 358 QIGDDIKLTYTPK 370


>gi|163941852|ref|YP_001646736.1| riboflavin biosynthesis protein RibD [Bacillus weihenstephanensis
           KBAB4]
 gi|163864049|gb|ABY45108.1| riboflavin biosynthesis protein RibD [Bacillus weihenstephanensis
           KBAB4]
          Length = 370

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 189/368 (51%), Gaps = 12/368 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE 
Sbjct: 3   DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKDGKIVGMGAHMRAGEEHAEVHALHMAGER 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L + GI +
Sbjct: 63  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPLVSGNGKRRLEEVGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 123 TTGVLEAEATLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATITGESKWITGEEARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TVL D+P LT R+       P+R+ILD H +    S +I   L    
Sbjct: 183 YRHIHDAILVGVNTVLTDNPHLTTRIPNG-GKHPIRVILDTHLRTPPSSHVITDGLTPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +     ++   NI +     +  +++ +L++L  + + SL VEGG  V  +F+
Sbjct: 242 IIVGKDVNKEKIASYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFVEGGQTVHANFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG    P+        K     +         G+D+ +    K+
Sbjct: 302 KTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKLQDALSLTIQEMKQIGNDIKIVATLKS 361

Query: 359 ---LCLQE 363
               CLQE
Sbjct: 362 EVTECLQE 369


>gi|301054889|ref|YP_003793100.1| riboflavin biosynthesis protein ribD [Bacillus anthracis CI]
 gi|300377058|gb|ADK05962.1| riboflavin biosynthesis protein ribD [Bacillus cereus biovar
           anthracis str. CI]
          Length = 367

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 122/355 (34%), Positives = 188/355 (52%), Gaps = 10/355 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M  AL  ++   G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+A
Sbjct: 5   ELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQA 64

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           RG T YVTLEPCSH+GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++
Sbjct: 65  RGGTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVL 124

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             + E E K     +    + KR  IT+K  V+ D  I  +   S  IT   ++ +VH +
Sbjct: 125 VGVCEEESKKMNEVFNKYILTKRPFITIKSGVTLDGKIATSLSDSKWITSTEARQEVHQI 184

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R ++ AILVG  TV  D+P LT R+      +P+R+ILD   ++ +++ ++        I
Sbjct: 185 RNENAAILVGANTVQKDNPSLTTRIP--NGRNPIRVILDSTLRIPMEANVVTDGEAPTWI 242

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
             T N       A     + +         +L ++L +L  +G+ SLL+EGG  V  SFI
Sbjct: 243 FTTNNHAAEKKKALENAGVKVFVTSGEKHINLYEMLDVLGQKGICSLLIEGGGEVNASFI 302

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
            + L+D +ILY +  +IG    PS +E   + K    +       D+    +GK+
Sbjct: 303 ENELMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDAIEFK----DISFTQVGKD 353


>gi|229047052|ref|ZP_04192675.1| Riboflavin biosynthesis protein [Bacillus cereus AH676]
 gi|228724291|gb|EEL75625.1| Riboflavin biosynthesis protein [Bacillus cereus AH676]
          Length = 358

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 124/352 (35%), Positives = 190/352 (53%), Gaps = 10/352 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  ++   G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ RGA
Sbjct: 1   MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQVRGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPCSH+GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  +
Sbjct: 61  TIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            E E K     +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R +
Sbjct: 121 CEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRNE 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           + AILVG  TV  D+P LT R+      +P+RIILD   ++ +++ ++        I  T
Sbjct: 181 NAAILVGANTVQKDNPSLTTRIP--NGRNPIRIILDSTLRIPMEANVVTDGEAPTWIFTT 238

Query: 250 ENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
            N      +A     + +         +L ++L +L  +GV+SLL+EGG  V  SFI ++
Sbjct: 239 SNHAAKKKIALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIENK 298

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           L+D +ILY +  +IG    PS +E   + K    +       DV    +GK+
Sbjct: 299 LMDKLILYVAPKIIGGRLAPSFVEGTGITKMQDAIEFK----DVSFTQVGKD 346


>gi|145638234|ref|ZP_01793844.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae PittII]
 gi|145272563|gb|EDK12470.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae PittII]
 gi|309751389|gb|ADO81373.1| Riboflavin biosynthesis protein RibD [Haemophilus influenzae R2866]
          Length = 372

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/375 (34%), Positives = 197/375 (52%), Gaps = 20/375 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           +  SS D  FM  AL  +      T+ NPSV C++VK+G ++G G     G PHAE  AL
Sbjct: 2   LEFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVAL 61

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AGE A+GATAYVTLEPCSHYGR+PPCA  +IE G+ +V+  + DP+ +V+G+GL+ LS
Sbjct: 62  AQAGENAKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLS 121

Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI     ++  + +     +L R  +    + LK+A+S D    MA   S  ITG  +
Sbjct: 122 DAGIESAANLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGSDA 181

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228
           ++ V  +RA+S A+L    TVL DDP L  R +   E             P+R+ILD   
Sbjct: 182 RSDVQKMRAKSSALLSTSATVLTDDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQH 241

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           ++    K+  T   +PV +V+  ++P     F      II      LK+L+  L  R + 
Sbjct: 242 RIQPTHKLFLT--HSPVWLVS--NEPRDLTGFPDFCEQIILPKENLLKELMQELGRRQIN 297

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344
           +L VE GA +A S I+++LVD +I+Y +  ++G+          L +      +   + +
Sbjct: 298 TLWVEAGANLAGSLIDAKLVDELIIYVAPKLLGDNARGLCQLPNLTKLADAPLWQLNKLE 357

Query: 345 YFGSDVCLEYIGKNL 359
             G D+ L Y  K +
Sbjct: 358 QIGDDIKLTYTPKGI 372


>gi|332160725|ref|YP_004297302.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325664955|gb|ADZ41599.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 369

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 126/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     TS NP+V C++V+DG ++G G     G PHAEV AL  AGE+
Sbjct: 4   DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSH+GR+PPCA  ++  G++RVV  + DP+ +V+GRGL  L Q G+ +
Sbjct: 64  ARGATAYVTLEPCSHHGRTPPCADALLTAGVKRVVAAMQDPNPQVAGRGLYKLKQAGVEV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP LT R   L               P+RII+D H +++   
Sbjct: 184 FRAQSSAILSTSATVLADDPALTVRWQELDAQTQALYPQDALRQPVRIIVDSHNRVTPQH 243

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           K+I+     P  +     D        ++ +   + +  DL  L+  L  R + S+ VE 
Sbjct: 244 KVIQQD--GPCWLARVETDEQSWPNNVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           G   A + + + +VD +ILY +  ++G         + L +      F+       G D+
Sbjct: 302 GPQFAGALLQAGVVDELILYIAPKLLGSDARGLCQLTGLTQLSDAPEFVFSEVRQVGPDL 361

Query: 351 CLEYIGK 357
            L    K
Sbjct: 362 RLRLQPK 368


>gi|238783633|ref|ZP_04627654.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
           bercovieri ATCC 43970]
 gi|238715511|gb|EEQ07502.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
           bercovieri ATCC 43970]
          Length = 369

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 128/367 (34%), Positives = 186/367 (50%), Gaps = 18/367 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     T  NP+V C++V+DG ++G G     G PHAEV AL  AGE+
Sbjct: 4   DEFYMARAFELARMGRFTTPPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+ +V+GRGL  L Q GI +
Sbjct: 64  ARGATAYVTLEPCSHHGRTPPCADALVAAGVIRVVAAMQDPNPQVAGRGLYKLKQAGIAV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
            RA+S AIL    TVLADDP LT R + L               P+RIILD H +++   
Sbjct: 184 FRAESAAILSTSATVLADDPSLTVRWDELDSETQGWYPQARLRQPIRIILDSHNRVTPHH 243

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           K+I+     P  +     D  L  A  ++ +   + +  DL  L+  L  R + S+ VE 
Sbjct: 244 KVIQQD--GPCWLARVEADEQLWPANVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           G  +A + + + +VD +ILY +  ++G         + L        F+       G D+
Sbjct: 302 GPQLAGALLQAGVVDELILYIAPKLLGSDARGLCELTGLTSLSQAPEFVFSDVRPVGPDL 361

Query: 351 CLEYIGK 357
            L    K
Sbjct: 362 RLRLKPK 368


>gi|15672975|ref|NP_267149.1| riboflavin-specific deaminase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723937|gb|AAK05091.1|AE006333_8 riboflavin-specific deaminase [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 362

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 120/357 (33%), Positives = 189/357 (52%), Gaps = 12/357 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  +    G  + NP V  LIVK+G +IG+G     G  HAE+ A ++  E 
Sbjct: 4   DEYYMDLAIVLANKGGGNVNPNPQVGALIVKEGRIIGQGYHEKYGKAHAEINAFKDCNES 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GAT YVTLEPC+H G+ PPC + II+ GI+RVV+   DP+  VSG+G++ + + GI +
Sbjct: 64  PEGATLYVTLEPCAHQGKQPPCFEAIIKNGIKRVVIGHLDPNPLVSGKGIKAMREAGIEV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E +     +     +   ++ +K  ++ D  I  +   S  ITG I++ +VH 
Sbjct: 124 SLNVLEKECEELNKIFFYYVSQGLPYVMMKYVMTLDGKIATSAGQSKWITGEIARQKVHQ 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R++  AI++G+ T++ DDP+L+ RL      +P+RII D H +  L SKI+ TA   P 
Sbjct: 184 DRSRFMAIMIGVETLILDDPQLSVRLE--NGKNPIRIICDTHLRSPLASKIVSTATEIPT 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           II T   DP     F K    II   C     +LK+L   L  +G+ S+++EGG  +  S
Sbjct: 242 IIATAESDPEKQAPFLKAGCEIILVSCLEGRLNLKELTKKLGEKGIDSIILEGGGTLNAS 301

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
            + + +V  +  Y +  + G    PSP+E   +E+          +  Y G D+ LE
Sbjct: 302 ALKAGIVQKVQTYIALKIFGGKEAPSPVEGHGIEQPNQAYLLEGAQITYLGEDILLE 358


>gi|212709165|ref|ZP_03317293.1| hypothetical protein PROVALCAL_00198 [Providencia alcalifaciens DSM
           30120]
 gi|212688077|gb|EEB47605.1| hypothetical protein PROVALCAL_00198 [Providencia alcalifaciens DSM
           30120]
          Length = 371

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 135/371 (36%), Positives = 192/371 (51%), Gaps = 19/371 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   D  +M+ A   ++     TS NP+V C+IV+DG ++G G     G PHAEV AL  
Sbjct: 1   MLEQDRIYMARAFELAKEGRFTTSPNPNVGCVIVRDGEIVGEGYHQKAGEPHAEVHALRM 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG++A+GATAYVTLEPCSH+GR+PPCA+ +I  GI RVV  + DP+ +V+GRGL  L+Q 
Sbjct: 61  AGDKAKGATAYVTLEPCSHHGRTPPCAEALINAGISRVVAAMQDPNPQVAGRGLYMLNQA 120

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI     ++  E +     +L R      +I LK+A S D    +A   S  IT   ++ 
Sbjct: 121 GIETASNILLEEAEALNRGFLKRMRTAFPYIQLKLAASLDGKTALANGESKWITSPAARK 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V +LRAQ+ AIL    TVLADDP LT R N L E             P+RI+LD H ++
Sbjct: 181 DVQVLRAQASAILSTSNTVLADDPALTVRWNELPEDIQAKYPEETLRQPIRIVLDRHNRI 240

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD-CRDLKKLLTILVGRGVTS 289
           + D K+  T L     +V    D  +      + + I   D   DL  L+  L  R V S
Sbjct: 241 TPDHKV--TQLEGECWLVRPTPDTAVTWQGDVEQLAIPADDNGIDLVILMMQLAKRNVNS 298

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG---IPSP-LEEGYLEKNFMCVRRDY 345
           + VE GA +A S +   LVD +I+Y +  ++G+     +  P L        F     + 
Sbjct: 299 IWVEAGAKLAGSLLKLGLVDELIVYIAPKLLGDAARGLVSLPELSALSDAPKFEFTDVEK 358

Query: 346 FGSDVCLEYIG 356
            GSD+ +    
Sbjct: 359 VGSDLRVRLRP 369


>gi|159029666|emb|CAO87744.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 386

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 119/362 (32%), Positives = 188/362 (51%), Gaps = 9/362 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           + FD + M   L  +R  +G TS NP V  +IV++GI+IG G     G PHAEV AL +A
Sbjct: 26  TEFDRKMMQRCLTLARQALGRTSPNPLVGSVIVQEGIIIGEGFHPGAGQPHAEVLALRQA 85

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            E+ARGAT YV LEPC+HYGR+PPC++ I+  GI++VVV + DP+  V+G+G+Q L+  G
Sbjct: 86  AEKARGATLYVNLEPCNHYGRTPPCSEAIVRAGIKKVVVGMIDPNPLVAGKGIQRLASAG 145

Query: 124 IIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I     + ESE +     ++ R   K+    LK A++ D  I      S  IT   S+  
Sbjct: 146 IETLVGVEESECRQVNQGFIHRITAKKPFGILKYAMTLDGKIAATSGHSTWITSPASRQI 205

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LR+  DAI+VG  TV  D+P LT    GL  H+P+R+++     L   + +  T+  
Sbjct: 206 VHQLRSACDAIIVGGSTVRQDNPHLTTH--GLCNHNPLRVVMTRSLDLPPSAHLWDTSQF 263

Query: 243 APVIIVTENDDPVL-ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            P ++ T+ D  V        K + +I         ++  L  RG   +L E G  ++ +
Sbjct: 264 -PTLVYTQIDSNVKLKQQLLTKGVEVIELTEVTPTLVMENLYQRGFCQVLWECGGGLSAA 322

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
            I   +V  II + +  +IG    P+ + +      F  + +     +V + Y+  ++ +
Sbjct: 323 AIAEGMVQKIIAFIAPKIIGGINAPTAVGDLG----FQLMSQALQLENVTVNYLNPDILI 378

Query: 362 QE 363
           + 
Sbjct: 379 EG 380


>gi|301169668|emb|CBW29269.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Haemophilus influenzae 10810]
          Length = 372

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/373 (34%), Positives = 195/373 (52%), Gaps = 20/373 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           +  SS D  FM  AL  +      T+ NPSV C++VK+G ++G G     G PHAE  AL
Sbjct: 2   LEFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVAL 61

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AGE A+GATAYVTLEPC+HYGR+PPCA  +IE G+ +V+  + DP+ +V+G+GL+ LS
Sbjct: 62  AQAGENAKGATAYVTLEPCAHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLS 121

Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI     ++  + +     +L R  +    + LK+A+S D    MA   S  ITG  +
Sbjct: 122 DAGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDA 181

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228
           ++ V  +RA+S A+L    TV+ADDP L  R +   E             P+R+ILD   
Sbjct: 182 RSDVQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPENLKTGYKKEWLRQPVRVILDSQH 241

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           ++    K+  T   +PV +V+   +P     F      II      LK+L+  L  R + 
Sbjct: 242 RIQPTHKLFLT--HSPVWLVSS--EPRDLTGFPDFCEKIILPKENLLKELMRELGKRQIN 297

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344
           +L VE GA +A S I+++LVD +I+Y +  ++G+          L +      +     +
Sbjct: 298 TLWVEAGANLAGSLIDAKLVDELIIYVAPKLLGDNARGLCQLPNLTKLADAPLWQLNELE 357

Query: 345 YFGSDVCLEYIGK 357
             G D+ L Y  K
Sbjct: 358 QIGDDIKLTYTPK 370


>gi|260581778|ref|ZP_05849575.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae NT127]
 gi|260095371|gb|EEW79262.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae NT127]
          Length = 372

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/375 (34%), Positives = 197/375 (52%), Gaps = 20/375 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           +  SS D  FM  AL  +      T+ NPSV C++VK+G ++G G     G PHAE  AL
Sbjct: 2   LEFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVAL 61

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AGE ++GATAYVTLEPCSHYGR+PPCA  +IE G+ +V+  + DP+ +V+G+GL+ LS
Sbjct: 62  AQAGENSKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLS 121

Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI     ++  + +     +L R  +    + LK+A+S D    MA   S  ITG  +
Sbjct: 122 DAGIESAVNLLSDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGSDA 181

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228
           ++ V  +RA+S A+L    TVLADDP L  R +   E             P+R+ILD   
Sbjct: 182 RSDVQKMRAKSSALLSTSATVLADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQH 241

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           ++    K+  T   +PV +V+  ++P     F      II      LK+L+  L  R + 
Sbjct: 242 RIQPTHKLFLT--YSPVWLVS--NEPRDLTGFPDFCEQIILPKENLLKELMQELGRRQIN 297

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344
           +L VE GA +A S I+++LVD +I+Y +  ++G+          L +      +     +
Sbjct: 298 TLWVEAGANLAGSLIDAKLVDELIIYVAPKLLGDNARGLCQLPNLTKLADAPLWQLNELE 357

Query: 345 YFGSDVCLEYIGKNL 359
             G D+ L Y  K +
Sbjct: 358 QIGDDIKLTYTPKGI 372


>gi|228959585|ref|ZP_04121266.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800077|gb|EEM47013.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 358

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 125/352 (35%), Positives = 190/352 (53%), Gaps = 10/352 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  ++   G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARG 
Sbjct: 1   MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGG 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPCSH+GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  +
Sbjct: 61  TIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            E E K     +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R +
Sbjct: 121 CEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTGARQEVHQIRNE 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           + AILVG  TV  D+P LT R+      +P+RIILD   ++ +++ ++        I  T
Sbjct: 181 NAAILVGANTVQKDNPSLTTRIP--NGRNPIRIILDSTLRIPMEANVVTDGEAPTWIFTT 238

Query: 250 ENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
            N      +A     + +         +L ++L +L  +GV+SLLVEGG  V  SFI ++
Sbjct: 239 SNHAAKKKIALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLVEGGGEVNASFIENK 298

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           L+D +ILY +  +IG    PS +E   + K    +       DV    +GK+
Sbjct: 299 LMDKLILYVAPKIIGGRLAPSFVEGTGITKMQDAIEFK----DVSFTQVGKD 346


>gi|228973365|ref|ZP_04133953.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228786345|gb|EEM34336.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
          Length = 358

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 123/352 (34%), Positives = 189/352 (53%), Gaps = 10/352 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  ++   G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARGA
Sbjct: 1   MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPCSHYGR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  +
Sbjct: 61  TIYVTLEPCSHYGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            E E K     +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R +
Sbjct: 121 CEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRNE 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           + AILVG  TV  D+P LT R+      +P+RIILD   ++ +++ ++        I  T
Sbjct: 181 NAAILVGANTVQKDNPSLTTRIP--NGRNPIRIILDSTLRIPMEANVVTDGEAPTWIFTT 238

Query: 250 ENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
            N       A     + +         +L ++L +L  +GV+SLL+EGG  V  SFI ++
Sbjct: 239 SNHAAKKKKALENAGVKVFVTSGEKHINLHEILDVLGQKGVSSLLIEGGGEVNASFIENK 298

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           L++ +ILY +  +IG    PS +    + K    +       D+    +GK+
Sbjct: 299 LMNKLILYVAPKIIGGRLAPSFVGGTGITKMQDAIEFK----DISFTQVGKD 346


>gi|227327505|ref|ZP_03831529.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 378

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 186/369 (50%), Gaps = 18/369 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D  +M+ AL  +R     T+ NP+V C+IV+DG ++G G     G PHAEV AL  AG
Sbjct: 11  PQDELYMARALELARRGCFTTAPNPNVGCVIVRDGEIVGEGYHFRAGEPHAEVHALRMAG 70

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGATAYVTLEPCSH+GR+PPCA  +I  G+ RVV  + DP+ +V+GRGL  L Q GI
Sbjct: 71  ERARGATAYVTLEPCSHHGRTPPCADALITAGVSRVVAAMQDPNPQVAGRGLHRLQQAGI 130

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V
Sbjct: 131 AVSHGLMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDV 190

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSL 232
              RA+S AIL    TVLADDP LT R + L               P+R+++D   +++ 
Sbjct: 191 QRFRAESAAILSTSATVLADDPSLTVRWSELGADVQKRYSESDLRQPVRVVVDSQQRVTP 250

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
             +I+         +     D        ++ +   +    DL  L+ +L  R + S+ V
Sbjct: 251 QHRIVNQPGE--TWLARVQADEQAWPQGVEQVMLPQHNGGVDLVALMMVLGRRQINSVWV 308

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGS 348
           E GA++A + +N+ +VD +I+Y +  ++GE          L++      F        G 
Sbjct: 309 EAGASLAGALLNAGVVDELIVYLAPKLLGENARSLCLLPGLDQLSQAPEFDIADVRQIGP 368

Query: 349 DVCLEYIGK 357
           D+ L    K
Sbjct: 369 DLRLRLKPK 377


>gi|15605717|ref|NP_213094.1| riboflavin specific deaminase [Aquifex aeolicus VF5]
 gi|6225948|sp|O66534|RIBD_AQUAE RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
           RecName:
           Full=Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase; Includes: RecName:
           Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|2982867|gb|AAC06487.1| riboflavin specific deaminase [Aquifex aeolicus VF5]
          Length = 356

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 126/351 (35%), Positives = 196/351 (55%), Gaps = 6/351 (1%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D  +M  AL  ++   G T  NP+V  ++VK+G ++G G     G PHAEV AL +AG
Sbjct: 4   EIDKNYMKLALSLAKKRKGYTHPNPTVGAVVVKEGKIVGLGYHEKAGKPHAEVMALGQAG 63

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E+A+GAT YVTLEPC+H+GR+PPC   II  GI+RVVV   DP+  +SG+G++ L   GI
Sbjct: 64  EKAKGATLYVTLEPCTHFGRTPPCTDAIIRSGIKRVVVATLDPNPLMSGKGVEKLRNAGI 123

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            VD  + E E +     + T   ++R +ITLK A + D  +      S  IT   S+   
Sbjct: 124 EVDVGVCEEEARELNEDFFTYITQERPYITLKWAQTLDGKLATLTGSSKWITSKESRKVA 183

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H+LR ++ A+LVG+ TV+ DDP LT R     E  P+RIILDP  ++ L +K++ T   A
Sbjct: 184 HILRREATAVLVGVNTVIKDDPHLTVRFV-PTEKQPVRIILDPELEVPLSAKVLNTE-EA 241

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P I++T+ ++   A   ++K + ++     +LK +L  L    +  L+VEGG     SF+
Sbjct: 242 PTIVITKKEN-EKAEKLKEKGVQVLILKGFNLKNILKKLKELEIMHLMVEGGPRTLTSFL 300

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC--VRRDYFGSDVCL 352
                D I+++ +  ++GEG     L    +E++      + +  G D+ +
Sbjct: 301 KEGFFDRIVVFIAPKIMGEGLSIGDLGIRSIEESLKVRKKKVENLGEDLVI 351


>gi|315634417|ref|ZP_07889704.1| riboflavin biosynthesis protein RibD [Aggregatibacter segnis ATCC
           33393]
 gi|315477007|gb|EFU67752.1| riboflavin biosynthesis protein RibD [Aggregatibacter segnis ATCC
           33393]
          Length = 374

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 137/373 (36%), Positives = 194/373 (52%), Gaps = 19/373 (5%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P S  DA FM  AL  ++     T+ NPSV C++VKDG V+G+G  A  G PHAEV AL 
Sbjct: 4   PFSPQDAAFMQLALDLAKQGEFTTTPNPSVGCVLVKDGEVVGKGFHAKAGEPHAEVMALR 63

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           EAGE+ARGATAYVTLEPCSH+GR+PPCA+ ++E G+ +V+  + DP+ +V+G+GLQ LS 
Sbjct: 64  EAGEKARGATAYVTLEPCSHFGRTPPCAKGLVEAGVSKVIAAMCDPNPQVAGKGLQILSD 123

Query: 122 KGIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI     +  E        +L R    +  + LK+A+S D    MA   S  ITG  ++
Sbjct: 124 AGIQSAVGLLEENAEQLNKGFLKRMRTGKPFVQLKLAMSIDGKTAMASGESKWITGAQAR 183

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFK 229
             V   RA++ AIL    TVLADDP L  R   L           +   P+R+ILD   K
Sbjct: 184 ADVQQYRAKASAILSTSQTVLADDPSLNVRWEELPLDVKASYAQEKLRQPVRVILDSSHK 243

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVT 288
           +  D K+  T   +PV +V E D  +         + +        L+ L+  L  R + 
Sbjct: 244 VRSDFKVFSTE--SPVWLVGEEDYSLTDFPPFTDYLKLDRNQGETRLQSLMAELGKRQIN 301

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344
           +L VE GA +A + I   LVD +I+Y +  ++G+          L +      +     +
Sbjct: 302 TLWVEAGATLAGALIAENLVDELIIYMAPKLLGDQARDLCHLPNLTQLADAPLWQLQSCE 361

Query: 345 YFGSDVCLEYIGK 357
             G D+ L YI K
Sbjct: 362 PVGDDLKLIYIRK 374


>gi|52142146|ref|YP_084683.1| riboflavin biosynthesis protein;
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Bacillus cereus E33L]
 gi|51975615|gb|AAU17165.1| riboflavin biosynthesis protein;
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Bacillus cereus E33L]
          Length = 367

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 124/355 (34%), Positives = 190/355 (53%), Gaps = 10/355 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M  AL  ++   G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+A
Sbjct: 5   ELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQA 64

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
            G T YVTLEPCSH+GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++
Sbjct: 65  CGGTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVL 124

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             + E E K     +    + KR  IT+K  V+ D  I  +   S  IT   ++ +VH +
Sbjct: 125 VGVCEEESKKMNEVFNKYILTKRPFITIKSGVTLDGKIATSLSDSKWITSTEARQEVHQI 184

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R ++ AILVG  TV  D+P LT R+      +P+R+ILD   ++ +++ ++        I
Sbjct: 185 RNENAAILVGANTVQKDNPSLTTRIP--NGRNPIRVILDSTLRIPMEANVVTDGEAPTWI 242

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
             T N       A     + I         +L ++L +L G+GV+SLL+EGG  V  SFI
Sbjct: 243 FTTSNHAAEKKKALENAGVKIFVTSGEKHINLYEMLDVLGGKGVSSLLIEGGGEVNASFI 302

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
            ++L+D +ILY +  +IG    PS +E   + K    +       D+    +GK+
Sbjct: 303 ENKLIDKLILYIAPKMIGGRMAPSFVEGAGITKMQDAIEFK----DISFTQVGKD 353


>gi|318604604|emb|CBY26102.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 369

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 126/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     TS NP+V C++V+DG ++G G     G PHAEV AL  AGE+
Sbjct: 4   DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSH+GR+PPCA  ++  G++RVV  + DP+ +V+GRGL  L Q G+ +
Sbjct: 64  ARGATAYVTLEPCSHHGRTPPCADALLTAGVKRVVAAMQDPNPQVAGRGLYKLKQAGVEV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP LT R   L               P+RII+D H +++   
Sbjct: 184 FRAQSSAILSTSATVLADDPALTVRWQELDAQTQALYPQDALRQPVRIIVDSHNRVTPQH 243

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           K+I+     P  +     D        ++ +   + +  DL  L+  L  R + S+ VE 
Sbjct: 244 KVIQQD--GPCWLARVETDEQSWPNNVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           G   A + + + +VD +ILY +  ++G         + L +      F+       G D+
Sbjct: 302 GPQFAGALLQAGVVDELILYIAPKLLGSDARGLCQLAGLTQLSDAPEFVFSEVRQVGPDL 361

Query: 351 CLEYIGK 357
            L    K
Sbjct: 362 RLRLQPK 368


>gi|240949069|ref|ZP_04753420.1| riboflavin biosynthesis protein [Actinobacillus minor NM305]
 gi|240296542|gb|EER47167.1| riboflavin biosynthesis protein [Actinobacillus minor NM305]
          Length = 355

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 115/354 (32%), Positives = 182/354 (51%), Gaps = 12/354 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ A+  +    G T+ NP V C+IVK+  ++  G     G  HAE  A+  +  + RGA
Sbjct: 1   MARAIALAEKARGWTNPNPLVGCVIVKNDEILAEGYHERIGGWHAERNAILNSNADLRGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPC H+GR+PPC+  +IE GI +V +   DP+  VSG+G++ L   GI +V   
Sbjct: 61  TAYVTLEPCCHHGRTPPCSDLLIERGISKVFIGSRDPNPLVSGKGVKQLQAAGIEVVTDF 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M  E       +      KR ++ LK A++ D  I  +   S  ITG +++ +V   R Q
Sbjct: 121 MREECDRLNPIFFHYIQTKRPYVLLKYAMTADGKIATSSGESKWITGELARAKVQETRHQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
             AI+VGI TVLAD+P L  R+       P+RI+ D   +  LD ++++TA     II T
Sbjct: 181 YSAIMVGIETVLADNPMLNSRMP--NAKQPVRIVCDSSLRTPLDCQLVQTAKEYRTIIAT 238

Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
            +DD      F+   + I+ C  +    DL+ LL  L    + SLL+EGG+++  S +  
Sbjct: 239 VSDDLQKIAQFQPLGVEILVCKVKDKRVDLQDLLQKLGEMQIDSLLLEGGSSLNFSALQV 298

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLEY 354
            +V+ +  Y +  ++G     +P+    +      V+         G D+ ++Y
Sbjct: 299 GIVNRVHCYIAPKLVGGATAKTPIGGEGIGVLSQAVKLTNAQISQIGEDILIDY 352


>gi|229168856|ref|ZP_04296574.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH621]
 gi|228614586|gb|EEK71693.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH621]
          Length = 379

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 123/368 (33%), Positives = 189/368 (51%), Gaps = 12/368 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++VKDG ++G G     G  HAEV AL  AGE 
Sbjct: 12  DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKDGKIVGMGAHMRAGEEHAEVHALHMAGER 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+   D +  VSG G + L + GI +
Sbjct: 72  AKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPLVSGNGKRRLEEVGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++++E  +    +      KR  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLDAEATLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TVL D+P LT R+       P+R+ILD H +    S +I   L    
Sbjct: 192 YRHIHDAILVGVNTVLTDNPHLTTRIPNG-GKHPIRVILDTHLRTPPSSHVITDGLTPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +     ++   NI +     +  +++ +L++L  + + SL VEGG  V  +F+
Sbjct: 251 IIVGKDVNKEKIASYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFVEGGQTVHANFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG    P+        K     +         G+D+ +    K+
Sbjct: 311 KTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKLQDALSLTIQEMKQIGNDIKIVATLKS 370

Query: 359 ---LCLQE 363
               CLQE
Sbjct: 371 EVTECLQE 378


>gi|206969393|ref|ZP_03230348.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH1134]
 gi|206736434|gb|EDZ53592.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH1134]
          Length = 367

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 124/355 (34%), Positives = 189/355 (53%), Gaps = 10/355 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M  AL  ++   G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+A
Sbjct: 5   ELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQA 64

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           RG T YVTLEPCSH+GR+ PCA  I++ GI++VVV   DP+  VSGRG++ L   GI ++
Sbjct: 65  RGGTIYVTLEPCSHHGRTGPCAGAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVL 124

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             + E E K     +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +
Sbjct: 125 VGVCEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQI 184

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R ++ AILVG  TV  D+P LT R+      +P+R+ILD   ++ +++ ++        I
Sbjct: 185 RNENAAILVGANTVQKDNPSLTTRIP--NGRNPIRVILDSTLRIPMEANVVTDREAPTWI 242

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
             T N       A     + +         +L ++L +L  +GV+SLL+EGG  V  SFI
Sbjct: 243 FTTSNHAEEKKKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFI 302

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
            ++L+D IILY +  +IG    PS +E   + K    +       D+    IGK+
Sbjct: 303 ENKLMDKIILYFAPKIIGGRLAPSFVEGTGITKMKDAIEFK----DISFTQIGKD 353


>gi|256004715|ref|ZP_05429691.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum DSM
           2360]
 gi|281416820|ref|ZP_06247840.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum
           JW20]
 gi|255991308|gb|EEU01414.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum DSM
           2360]
 gi|281408222|gb|EFB38480.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum
           JW20]
 gi|316941134|gb|ADU75168.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum DSM
           1313]
          Length = 368

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/357 (36%), Positives = 193/357 (54%), Gaps = 11/357 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             FMS A++ ++   G T+ NP V  ++VKDG +I  G     G PHAEV+A   A E+ 
Sbjct: 8   EFFMSRAIKLAKLGWGKTNPNPLVGAVVVKDGKIIAEGYHKQLGGPHAEVEAFNNAKEDV 67

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            G T YV LEPCSHYGR+PPCAQ II+ GI++VV  + DP+ +VSGRG + L   GI V+
Sbjct: 68  AGGTLYVNLEPCSHYGRTPPCAQKIIDVGIKKVVAAIKDPNPKVSGRGFEMLKNAGIEVE 127

Query: 128 RMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +  E        ++T  V+K+  + LK A++ D  I  A   S  +TG  ++N VH++
Sbjct: 128 VGVLEEEAIRLNEIFITYIVKKKPFVILKTAMTLDGKIATASGDSKWVTGEKARNHVHVI 187

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R +  A++VGI TVL D+P LT RL   +   P+RI++D    + LDS +I +   A VI
Sbjct: 188 RDRVAAVMVGINTVLKDNPYLTTRLPDKEGSDPVRIVVDSKGSIPLDSNVINSNSKAGVI 247

Query: 247 IVTEND-DPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           + T +  D         K + II  D      DLK L+  L    + S+L+EGG  +  S
Sbjct: 248 LATTSRIDKEKEKMLIDKGVKIIKADGSDGRVDLKLLMDELYKLEIDSVLLEGGGTLNSS 307

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
            I++ +VD ++ + S  ++G    P+ +E     +         +    FG D+ LE
Sbjct: 308 AISAGIVDKVMCFISPKIVGGENAPTSVEGIGALRMCEAIGVKNISVVKFGEDILLE 364


>gi|138895866|ref|YP_001126319.1| riboflavin biosynthesis protein RibD [Geobacillus
           thermodenitrificans NG80-2]
 gi|134267379|gb|ABO67574.1| Riboflavin biosynthesis protein RibD [Geobacillus
           thermodenitrificans NG80-2]
          Length = 359

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 127/350 (36%), Positives = 193/350 (55%), Gaps = 9/350 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  ++  VG TS NP+V  ++V DG ++G G     G PHAEV A+  AGE+ARGA
Sbjct: 1   MRLALDVAKAGVGQTSPNPAVGAVVVNDGTIVGIGAHLKAGEPHAEVHAIRMAGEKARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPCSHYG++PPCA  +IE G+RRVVV   DP+  V+G+G+  L + GI +   +
Sbjct: 61  TVYVTLEPCSHYGKTPPCADLLIEAGVRRVVVATTDPNPLVAGKGINKLRRAGIDVEVGI 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           ++ E       +      K   +T+K A S D  I  A   S  IT   ++  VH LRAQ
Sbjct: 121 LKEEADELNRMFFHYIATKTPFVTIKYACSLDGKIATATGESKWITSSAAREDVHRLRAQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DAILVG+ TV+AD+P+LT R+ G Q  +P+R+ILD +    LD+ ++        II  
Sbjct: 181 HDAILVGVNTVMADNPKLTVRI-GQQRKNPLRVILDTNLHTPLDAHVVVDKEAETWIITG 239

Query: 250 ENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
                  A  + +  + I+       D++++L +L  + +TSL VEGG+ +  SF+ S +
Sbjct: 240 SGVSREKAKMYERLGVRIVPMTSAHIDVREVLRLLGEQRITSLFVEGGSRIHDSFLRSGM 299

Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352
           V+ ++ Y +  +IG    P+P+      +    +       +  G D+ +
Sbjct: 300 VNEVVAYMAPKLIGGREAPTPVGGLGFSRLAEAMELDIRQIEKIGPDIKI 349


>gi|227113442|ref|ZP_03827098.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 378

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 127/369 (34%), Positives = 186/369 (50%), Gaps = 18/369 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D  +M+ AL  +R     T+ NP+V C+IV+DG ++G G     G PHAEV AL  AG
Sbjct: 11  PQDELYMARALELARRGCFTTAPNPNVGCVIVRDGEIVGEGYHFRAGEPHAEVHALRMAG 70

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGATAYVTLEPCSH+GR+PPCA  +I  G+ RVV  + DP+ +V+GRGL  L Q GI
Sbjct: 71  ERARGATAYVTLEPCSHHGRTPPCADALITAGVSRVVAAMQDPNPQVAGRGLHRLQQAGI 130

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V
Sbjct: 131 AVSHGLMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDV 190

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSL 232
              RA+S AIL    TVLADDP LT R + L               P+R+I+D   +++ 
Sbjct: 191 QRFRAESAAILSSSATVLADDPSLTVRWSELGADIQKRYSEADLRQPVRVIVDSQQRVTP 250

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
             +I+         +     D        ++ +   +    DL  L+ +L  R + S+ V
Sbjct: 251 QHRIVSQPGE--TWLARVQADEQAWPQGVEQVMLPQHNGGVDLVALMMVLGRRQINSVWV 308

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGS 348
           E GA++A + +N+ +VD +I+Y +  ++GE      L  G  +      F        G 
Sbjct: 309 EAGASLAGALLNAGVVDELIVYLAPKLLGENARSLCLLPGLDQLSQAPEFDIADVRQVGP 368

Query: 349 DVCLEYIGK 357
           D+ L    K
Sbjct: 369 DLRLRLKPK 377


>gi|311280696|ref|YP_003942927.1| riboflavin biosynthesis protein RibD [Enterobacter cloacae SCF1]
 gi|308749891|gb|ADO49643.1| riboflavin biosynthesis protein RibD [Enterobacter cloacae SCF1]
          Length = 368

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 181/368 (49%), Gaps = 20/368 (5%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP V C+IV+DG ++G G     G PHAEV AL  AG+
Sbjct: 2   QDEVYMARALKLAQRGRFTTHPNPRVGCVIVRDGDIVGEGFHLRAGEPHAEVHALRMAGD 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +ARGATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q G+ 
Sbjct: 62  KARGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGVE 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R       + LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPWLQLKLGASLDGGTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R   L               P+RI++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWEELDADTQASYPQENLRQPVRIVIDSRNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292
            +I+              D+           +NI   + + DL  L+  L  R + S+ V
Sbjct: 242 HRIVHQPGETW---FARTDEDSRQWPDGVSTLNIPAHNGQLDLVLLMMQLGRRQINSVWV 298

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGS 348
           E G  +A + + + +VD +I+Y +  ++G       +   LE+      F        G 
Sbjct: 299 EAGPRLAGALLQAGVVDELIVYVAPKLLGSDARGLCVLPGLEKLADAPQFRFNEIRQVGP 358

Query: 349 DVCLEYIG 356
           D+CL    
Sbjct: 359 DLCLHLTP 366


>gi|310644100|ref|YP_003948858.1| riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (riboflavin-specific deaminase) and
           5-amino-6-(5-phosphoribosylamino)uracil reductase)
           [Paenibacillus polymyxa SC2]
 gi|309249050|gb|ADO58617.1| Riboflavin biosynthesis protein
           (Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (Riboflavin-specific deaminase) and
           5-amino-6-(5-phosphoribosylamino)uracil reductase)
           [Paenibacillus polymyxa SC2]
          Length = 366

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 127/362 (35%), Positives = 187/362 (51%), Gaps = 12/362 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            ++M  AL  +R   G T  NP V  +IV +G ++G G     G PHAE+ AL  AGE A
Sbjct: 5   EKYMRLALENARSAKGQTEPNPLVGSVIVNNGRIVGIGAHLKPGEPHAEIHALRMAGEHA 64

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           +GAT YVTLEPCSH+GR+ PCA+ I++ GIRRVV+   DP+  VSGRG+Q L   GI ++
Sbjct: 65  QGATIYVTLEPCSHHGRTGPCAEAIVKAGIRRVVIAALDPNPLVSGRGVQILKDAGIEVI 124

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             + E E       +    V KR  IT+K AV+ D  I      S  IT   ++  VH L
Sbjct: 125 VGVCEQESIRMNEVFNQYIVNKRPFITIKSAVTLDGKIATRTSESKWITSEAAREDVHRL 184

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R +   ILVG+ TV+ D+P+LT RL   +  +P+RIILD   ++ LD+++I        I
Sbjct: 185 RHEHVGILVGVQTVIHDNPQLTTRLP--EGRNPIRIILDSKLRIPLDARVITDGEAPTWI 242

Query: 247 IVTENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
                 D        +  + +      Y +  +L ++L IL    V+S+ VEGGA V  S
Sbjct: 243 FTGRTYDKGKRSQLEQLGVKVYPTQDEYSERVNLPQMLDILGAAEVSSVFVEGGAEVNAS 302

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           F+   L D ++LY +  ++G    P  L    +      V       D+ +  +G +  +
Sbjct: 303 FVQQGLADKLVLYIAPKLVGGRSAPGFLGGEGVSAMSDAVALQ----DLSVTQVGVDWKI 358

Query: 362 QE 363
           + 
Sbjct: 359 EG 360


>gi|23097878|ref|NP_691344.1| riboflavin specific deaminase [Oceanobacillus iheyensis HTE831]
 gi|22776102|dbj|BAC12379.1| riboflavin specific deaminase
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase :
           5-amino-6-(5-phosphoribosylamino) uracil reductase)
           [Oceanobacillus iheyensis HTE831]
          Length = 367

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 120/361 (33%), Positives = 188/361 (52%), Gaps = 13/361 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D  +M  A+  ++   G T  NP V  +IV    ++G G     G PHAE+ AL+ AG
Sbjct: 2   TDDKHYMKLAIENAKAMKGQTDPNPLVGAVIVNHNRIVGVGSHLKAGEPHAEIHALQMAG 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E A+GAT YVTLEPCSH GR+ PCA  ++E G+RRVV+   DP+  V+G G++ L   GI
Sbjct: 62  ENAKGATIYVTLEPCSHQGRTGPCALALVEAGVRRVVIATLDPNPLVAGNGVKILEDAGI 121

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++E E       +      K+  IT+K A + D  +      S  IT   ++  V
Sbjct: 122 EVEVGVLEDESISMNEVFNKFITHKQPFITMKAASTLDGKVATKTNHSKWITSEAAREDV 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H LR +  AILVGI T++ DDP LT R+      +P+RI+LD   ++ LD++II+     
Sbjct: 182 HHLRNEHAAILVGIQTIIHDDPALTTRIP--NGRNPIRIVLDSSLRIPLDAQIIQDKRAP 239

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAH 300
            +I   E  D           + II    +   D++ ++  L  + ++SLL+EGG  +  
Sbjct: 240 TMIFTKEEVDQKKKDKLESVGVEIINTSGKEQTDIQDVVNHLGNQQISSLLLEGGGNIHA 299

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355
           SF+ + LVD ++LY +  + G    P+  E   +E+     + + ++ D  G D    +I
Sbjct: 300 SFLAAGLVDKVVLYMAPKLSGGKNAPTFFEGAGIEQMDDSIDLLNLKIDQIGPD--FRFI 357

Query: 356 G 356
           G
Sbjct: 358 G 358


>gi|125972628|ref|YP_001036538.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Clostridium thermocellum ATCC 27405]
 gi|125712853|gb|ABN51345.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Clostridium
           thermocellum ATCC 27405]
          Length = 365

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/357 (36%), Positives = 193/357 (54%), Gaps = 11/357 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             FMS A++ ++   G T+ NP V  ++VKDG +I  G     G PHAEV+A   A E+ 
Sbjct: 5   EFFMSRAIKLAKLGWGKTNPNPLVGAVVVKDGKIIAEGYHKQLGGPHAEVEAFNNAKEDV 64

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            G T YV LEPCSHYGR+PPCAQ II+ GI++VV  + DP+ +VSGRG + L   GI V+
Sbjct: 65  AGGTLYVNLEPCSHYGRTPPCAQKIIDVGIKKVVAAIKDPNPKVSGRGFEMLKNAGIEVE 124

Query: 128 RMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +  E        ++T  V+K+  + LK A++ D  I  A   S  +TG  ++N VH++
Sbjct: 125 VGVLEEEAIRLNEIFITYIVKKKPFVILKTAMTLDGKIATASGDSKWVTGEKARNHVHVI 184

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R +  A++VGI TVL D+P LT RL   +   P+RI++D    + LDS +I +   A VI
Sbjct: 185 RDRVAAVMVGINTVLKDNPYLTTRLPDKEGSDPVRIVVDSKGSIPLDSNVINSNSKAGVI 244

Query: 247 IVTEND-DPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           + T +  D         K + II  D      DLK L+  L    + S+L+EGG  +  S
Sbjct: 245 LATTSRIDKEKEKMLIDKGVKIIKADGSDGRVDLKLLMDELYKLEIDSVLLEGGGTLNSS 304

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
            I++ +VD ++ + S  ++G    P+ +E     +         +    FG D+ LE
Sbjct: 305 AISAGIVDKVMCFISPKIVGGENAPTSVEGIGALRMCEAIGVKNISVVKFGEDILLE 361


>gi|326406537|gb|ADZ63608.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-5-phosphoribosylamino uracil reductase
           [Lactococcus lactis subsp. lactis CV56]
          Length = 362

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 120/357 (33%), Positives = 190/357 (53%), Gaps = 12/357 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++   G  + NP V  LIVK+G +IG+G     G  HAE+ A ++  E 
Sbjct: 4   DEYYMDLAIVLAKKGGGNVNPNPQVGALIVKEGRIIGQGYHEKYGKAHAEINAFKDCNES 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GA  YVTLEPC+H G+ PPC + II+ GI+RVV+   DP+  VSG+G++ + + GI +
Sbjct: 64  PEGAMLYVTLEPCAHQGKQPPCFEAIIKNGIKRVVIGHLDPNPLVSGKGIKAMREAGIEV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E +     +     +   ++ +K A++ D  I  +   S  ITG I++ +VH 
Sbjct: 124 SLNVLEKECEELNKIFFYYVSQGLPYVMMKYAMTLDGKIATSAGQSKWITGEIARQKVHQ 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R++  AI++G+ T++ DDP+L+ RL      +P+RII D H +  L SKI+ TA   P 
Sbjct: 184 DRSRFMAIMIGVETLILDDPQLSVRLE--NGKNPIRIICDTHLRSPLASKIVSTATEIPT 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           II T   DP     F K    II   C     +LK+L   L  +G+ S+++EGG  +  S
Sbjct: 242 IIATAESDPEKQAPFLKAGCEIILVSCLEGRLNLKELTKKLGEKGIDSIILEGGGTLNAS 301

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
            + + +V  +  Y +  + G    PSP+E   +E+          +  Y G D+ LE
Sbjct: 302 ALKAGIVQKVQTYIALKIFGGKEAPSPVEGHGIEQPNQAYLLEGAQITYLGEDILLE 358


>gi|145632331|ref|ZP_01788066.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae 3655]
 gi|144987238|gb|EDJ93768.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae 3655]
          Length = 372

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 128/373 (34%), Positives = 194/373 (52%), Gaps = 20/373 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           +  SS D  FM  AL  +      T+ NPSV C++VK+G ++G G     G PHAE  AL
Sbjct: 2   LEFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVAL 61

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AGE ++GATAYVTLEPCSHYGR+PPCA  +IE G+ +V+  + DP+ +V+G+GL+ LS
Sbjct: 62  AQAGENSKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLS 121

Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI     ++  + +     +L R  +    + LK+A+S D    MA   S  ITG  +
Sbjct: 122 DAGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDA 181

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228
           ++ V  +RA+S A+L    TV+ADDP L  R +   E             P+R+ILD   
Sbjct: 182 RSDVQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSLH 241

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           ++    K+  T   +PV +V+     +    F      II      LK+L+  L  R + 
Sbjct: 242 RIQPTHKLFLT--HSPVWLVSSETRDLT--GFPDFCEQIILPKENLLKELMRELGKRQIN 297

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344
           +L VE GA +A S I+++LVD +I+Y +  ++G+          L +      +     +
Sbjct: 298 TLWVEAGANLAGSLIDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNELE 357

Query: 345 YFGSDVCLEYIGK 357
             G D+ L Y  K
Sbjct: 358 QIGDDIKLTYTPK 370


>gi|228986473|ref|ZP_04146609.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228773294|gb|EEM21724.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 358

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 123/352 (34%), Positives = 190/352 (53%), Gaps = 10/352 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  ++   G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARG 
Sbjct: 1   MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARGG 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPCSH+GR+ PCA+ I++ GI+RVVV   DP+  VSGRG+Q L   GI ++  +
Sbjct: 61  TIYVTLEPCSHHGRTGPCAEAIVQAGIKRVVVATLDPNPLVSGRGIQILQDAGIDVLVGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            E E K     +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R +
Sbjct: 121 CEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNE 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           + AILVG+ TV  D+P LT R+      +P+R+ILD   ++ +++ ++        I  T
Sbjct: 181 NAAILVGVNTVQKDNPSLTTRIP--NGRNPIRVILDSTLRIPMEANVVTDGEAPTWIFTT 238

Query: 250 ENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
            N       A     + +         +L ++L +L  +G++SLL+EGG  V  SFI ++
Sbjct: 239 NNHAAEKKKALENAGVKVFVTSGEKHINLYEMLDVLGQKGISSLLIEGGGEVNASFIENK 298

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           L+D +ILY +  +IG    PS +E   + K    +       D+    +GK+
Sbjct: 299 LMDKLILYVAPKIIGGRLAPSFVEGTGITKMQDAIEFK----DISFTQVGKD 346


>gi|322420507|ref|YP_004199730.1| riboflavin biosynthesis protein RibD [Geobacter sp. M18]
 gi|320126894|gb|ADW14454.1| riboflavin biosynthesis protein RibD [Geobacter sp. M18]
          Length = 374

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 128/363 (35%), Positives = 200/363 (55%), Gaps = 11/363 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S+   + M  AL  +R  VG T+ NP+V C+IV+DG V+G+G     G PHAEV AL  
Sbjct: 1   MSADHLKMMRLALSEARKGVGKTAPNPAVGCVIVRDGEVVGKGWHKKAGTPHAEVHALRA 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A GA AYVTLEPCSH+G++PPCA+ +IE  + RV V + DP+  VSGRG++ L   
Sbjct: 61  AGELAAGADAYVTLEPCSHFGKTPPCARALIEARVGRVFVAMVDPNPLVSGRGIKMLQDA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E+E       ++   + KR ++ LK A++ D     A   S  +T   S+ 
Sbjct: 121 GIEVEVGLLEAESLEINRPFVKWILTKRPYVVLKSALTLDGKSATATGDSKWVTCDRSRR 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +VH LR + DAI+VG+GTV+ DDP LTCR+ G     P+R+I+D   ++   + +     
Sbjct: 181 EVHRLRGRLDAIMVGVGTVIKDDPLLTCRVPG--GKDPLRVIVDSTLRIPRHAALFSLRS 238

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
            A  +I T   D     A     + ++ C+ +    D   LLT L  RGV S+L+EGG+ 
Sbjct: 239 EAKTVIATCCADLARIDAVAAHGVEVLVCNEKDGRVDPDDLLTKLGERGVQSILLEGGSH 298

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           +A +F+ + L+D  +L+ +  ++G  G      + +           ++    G D+ +E
Sbjct: 299 LAGAFLRAGLIDRCMLFLAPKLVGGAGMGLFAGAGVNLMADAIRLEEMKVKRIGVDLLVE 358

Query: 354 YIG 356
            + 
Sbjct: 359 GVP 361


>gi|166366741|ref|YP_001659014.1| riboflavin biosynthesis protein [Microcystis aeruginosa NIES-843]
 gi|166089114|dbj|BAG03822.1| riboflavin biosynthesis protein [Microcystis aeruginosa NIES-843]
          Length = 365

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 116/356 (32%), Positives = 180/356 (50%), Gaps = 8/356 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           + FD   M   L  +R  +G TS NP V  +IV++G +IG G     G PHAEV AL +A
Sbjct: 5   TEFDRTMMQRCLTLARQALGRTSPNPLVGAVIVQEGTIIGEGFHPGAGQPHAEVFALRQA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            E+ARGAT YV LEPC+HYGR+PPC++ I++ GI++VVV + DP+  V+G+G+Q L   G
Sbjct: 65  AEKARGATLYVNLEPCNHYGRTPPCSEAIVQAGIKKVVVGMIDPNPLVAGKGIQRLESAG 124

Query: 124 IIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I     + ESE       ++ R   K+    LK A++ D  I      S  IT   S+  
Sbjct: 125 IETLVGVEESECLQLNQGFIHRITAKKPFGILKYAMTLDGKIAATSGHSTWITSPASRQI 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LR+  DAI+VG  TV  D+P LT    GL +H+P+R+++     L   + +  T+  
Sbjct: 185 VHQLRSACDAIIVGGSTVRQDNPHLTTH--GLSDHNPLRVVMTRSLDLPSSAHLWDTSQF 242

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             ++    + +  L      K + +I         ++  L  RG   +L E G  ++ + 
Sbjct: 243 PTLLYTQIDSNVKLQQQLLTKGVEVIELTEVTPTLVMENLYQRGFCQVLWECGGGLSAAA 302

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLE 353
           I   +V  II + +  +IG    P+ + +   +          V  +Y   D+ +E
Sbjct: 303 IAEGMVQKIIAFIAPKIIGGIQAPTAVGDLGFQLMSQALQLKNVTVNYLNPDILIE 358


>gi|293392571|ref|ZP_06636891.1| riboflavin biosynthesis protein RibD [Serratia odorifera DSM 4582]
 gi|291424973|gb|EFE98182.1| riboflavin biosynthesis protein RibD [Serratia odorifera DSM 4582]
          Length = 370

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/367 (35%), Positives = 187/367 (50%), Gaps = 18/367 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     T+ NP+V C+IV+DG ++G G     G PHAEV AL  AG+ 
Sbjct: 4   DELYMARAFELARLGRFTTAPNPNVGCVIVRDGQIVGEGYHLRAGEPHAEVHALRMAGKR 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSH+GR+PPCA  +I+ G+ RVV  + DP+ +V+GRGL  L Q GI +
Sbjct: 64  ARGATAYVTLEPCSHHGRTPPCADALIDAGVSRVVAAMQDPNPQVAGRGLYKLQQAGIEV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R      ++ LK+  S D    MA   S  IT   ++  V  
Sbjct: 124 RHGLMLAEAEAVNLGFLKRMRTGFPYVQLKLGASLDGCTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
           LRA+S AIL    TVLADDP LT R + L               P+RIILD H +++   
Sbjct: 184 LRAESAAILSTSATVLADDPSLTVRWDELDAETQRSYPRENLRQPLRIILDGHNRVTPQH 243

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           K+I+        +     D  L     ++     +    DL  ++  L  R V S+ VE 
Sbjct: 244 KLIQQP--GTTWLARLQPDQGLWPQNVEQLQFPAHGGGIDLVVMMMQLAKRQVNSIWVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           GA ++ + + + LVD +ILY +  ++G+ G        LE+      F+       G D+
Sbjct: 302 GARLSGALLQAGLVDELILYIAPKLLGDNGRGLCHLPGLEQLIDAPEFVFSEVRQVGPDL 361

Query: 351 CLEYIGK 357
            L    K
Sbjct: 362 RLRLKAK 368


>gi|145630038|ref|ZP_01785820.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae R3021]
 gi|144984319|gb|EDJ91742.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae R3021]
          Length = 372

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 126/371 (33%), Positives = 192/371 (51%), Gaps = 20/371 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            SS D  FM  AL  +      T+ NPSV C++VK+G ++G G     G PHAE  AL +
Sbjct: 4   FSSQDHVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERIALAQ 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+G TAYVTLEPCSHYGR+PPCA  +IE G+ +V+  + DP+ +V+G+GL+ LS  
Sbjct: 64  AGENAKGTTAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDA 123

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI     ++  + +     +L R  +    + LK+A+S D    M    S  ITG  +++
Sbjct: 124 GIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMESGESKWITGSDARS 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V  +RA+S A+L    T++ADDP L  R +   E             P+R+ILD   ++
Sbjct: 184 DVQKMRAKSSALLSTSATIIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHRI 243

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
               K+  T   +PV +V+   +P     F      II      LK+++  L  R + +L
Sbjct: 244 QPTHKLFLT--HSPVWLVSS--EPRDLTGFPDFCEQIILPKENLLKEVMRELGKRQINTL 299

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYF 346
            VE GA +A S I+++LVD +I+Y +  ++G+          L +      +     +  
Sbjct: 300 WVEAGANLAGSLIDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNELEQI 359

Query: 347 GSDVCLEYIGK 357
           G D+ L Y  K
Sbjct: 360 GDDIKLTYTPK 370


>gi|268611447|ref|ZP_06145174.1| riboflavin biosynthesis protein [Ruminococcus flavefaciens FD-1]
          Length = 373

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 123/366 (33%), Positives = 173/366 (47%), Gaps = 22/366 (6%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE---EAG 64
             +M  AL  ++  +G TS NP V  +IV+DG +IG G     G  HAE  A     E G
Sbjct: 4   EDYMRRALELAQRGMGFTSPNPMVGAVIVRDGKIIGEGWHKKYGELHAERTAFAYCDENG 63

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            +  GA  YVTLEPC H+G+ PPC   +IE GI+RV +   DP+  VSG+G++ L + GI
Sbjct: 64  IDCTGADMYVTLEPCCHHGKQPPCTDAVIEHGIKRVFIGSADPNPMVSGKGVKILREHGI 123

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            + + ++  E       +          +T+K A++ D  I      S  ITG  ++  V
Sbjct: 124 EVTEDVLREECDAINGIFFHWITHNWPFVTVKYAMTLDGKIATHTGESKWITGEEARLDV 183

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
              R +  AI+VGIGTVLADDP LTCRL       P+RII D   ++ LDS I+KTA   
Sbjct: 184 QRERLRHSAIMVGIGTVLADDPMLTCRLE--NGRDPIRIICDSRLRIPLDSNIVKTAKDV 241

Query: 244 PVII----VTENDDP---VLALAFRKKNINIIY----CDCRDLKKLLTILVGRGVTSLLV 292
           P II      + DD           +    II     C   DL  L+  L    + S+LV
Sbjct: 242 PTIIAMTNFNKKDDREKCEKRHILEEMGCRIISTKANCGHVDLYTLMLKLREMKIDSILV 301

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFG 347
           EGG  +  S    +LV  +  Y +  + G     SP+E   +            +    G
Sbjct: 302 EGGGELNDSLFRHKLVQRVKAYIAPKIFGGKDAKSPVEGWGIPTPNDAYMIENTQIRRIG 361

Query: 348 SDVCLE 353
            D+ +E
Sbjct: 362 EDILIE 367


>gi|307628117|gb|ADN72421.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli UM146]
          Length = 361

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 128/362 (35%), Positives = 185/362 (51%), Gaps = 18/362 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEVQAL  AGE+A+GA
Sbjct: 1   MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVQALRMAGEKAKGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI +   +
Sbjct: 61  TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  LRAQ
Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKIIK 238
           S AIL    TVLADDP LT R + L E             P+RI++D   +++ + +I++
Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPEHRIVQ 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
                        +D        +  +   +    DL  L+  L  + + S+ VE G  +
Sbjct: 241 QPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTL 298

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           A + + + LVD +I+Y +  ++G           LE+      F      + G DVCL  
Sbjct: 299 AGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHL 358

Query: 355 IG 356
           +G
Sbjct: 359 VG 360


>gi|218781151|ref|YP_002432469.1| riboflavin biosynthesis protein RibD [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762535|gb|ACL05001.1| riboflavin biosynthesis protein RibD [Desulfatibacillum
           alkenivorans AK-01]
          Length = 372

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 188/368 (51%), Gaps = 12/368 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   D ++M  AL  +    G TS NP V  +IVKDG VIG+G     G PHAE+ ALEE
Sbjct: 1   MKKQDTQYMRQALALAEKGTGNTSPNPMVGAVIVKDGKVIGQGWHKKAGGPHAEIFALEE 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG +A+GAT YVTLEPC+H+G++PPC+  +++ GI +V+  + DP+ + +  GL++L + 
Sbjct: 61  AGADAKGATMYVTLEPCNHHGKTPPCSHAVLKAGIAKVIAAIKDPNPK-AQGGLKYLQEN 119

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+     + E+E +     ++      R  +  K A + D  I      S  ITG  S+ 
Sbjct: 120 GVETQWGVCEAEARKQNEFFIKHVTTGRPFVVCKCAATLDGRIATRIGDSKWITGEESRA 179

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH +R   DAILVGI TV  DDP LT RL   Q + P+R+ILD    +   +K+++   
Sbjct: 180 YVHKMRHAMDAILVGINTVRMDDPSLTARLEDGQGNDPLRVILDSRLSMDPSAKMLRQDS 239

Query: 242 LAPVIIVTENDDP-VLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGA 296
            +  +I      P V   A  K    I+         +L  +   L  RG+ SLL+EGG 
Sbjct: 240 DSGTLIFCGPQAPEVKRDALEKAGAEIVEAPEMSGFLNLDFICRNLGERGLNSLLIEGGG 299

Query: 297 AVAHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVC 351
            V  S + S +VD + L+ +  ++ G+ G+P     G            +    FG+D  
Sbjct: 300 HVHSSALKSGVVDKVCLFYAPKILCGDDGVPMFAGPGPDFMADSIELKDITLHRFGNDFM 359

Query: 352 LEYIGKNL 359
           +E    +L
Sbjct: 360 VEGYVMDL 367


>gi|67078030|ref|YP_245650.1| riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (riboflavin-specific deaminase) and
           5-amino-6-(5-phosphoribosylamino)uracil reductase)
           [Bacillus cereus E33L]
 gi|66970336|gb|AAY60312.1| riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (riboflavin-specific deaminase) and
           5-amino-6-(5-phosphoribosylamino)uracil reductase)
           [Bacillus cereus E33L]
          Length = 367

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 122/355 (34%), Positives = 190/355 (53%), Gaps = 10/355 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M  AL  ++   G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+A
Sbjct: 5   ELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQA 64

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           RG T YVTLEPCSH+GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++
Sbjct: 65  RGGTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVL 124

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             + E + K     +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +
Sbjct: 125 VGVCEEKSKKMNEVFNKYIMTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQI 184

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R ++ AILVG  TV  D+P LT R+      +P+R+ILD   ++ +++ ++        I
Sbjct: 185 RNENAAILVGANTVQKDNPSLTTRIP--NGRNPIRVILDSTLRIPMEANVVTDVEAPTWI 242

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
             T N       A     + +         +L ++L +L  +GV+SLL+EGG  V  SFI
Sbjct: 243 FTTSNHAAEKRKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFI 302

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
            ++L+D +ILY +  +IG    PS +E   + K    +       D+    IGK+
Sbjct: 303 ENKLMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDAIEFK----DISFTQIGKD 353


>gi|183601038|ref|ZP_02962531.1| hypothetical protein PROSTU_04659 [Providencia stuartii ATCC 25827]
 gi|188019376|gb|EDU57416.1| hypothetical protein PROSTU_04659 [Providencia stuartii ATCC 25827]
          Length = 371

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 132/372 (35%), Positives = 192/372 (51%), Gaps = 21/372 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   D  +M+ AL  ++     TS NP+V C+IV+DG ++G G     G PHAEV AL  
Sbjct: 1   MIEQDRIYMARALELAQKGRFTTSPNPNVGCVIVRDGEIVGEGYHQKAGEPHAEVHALRM 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE+A+GATAYVTLEPCSH+GR+PPCA+ +I  G+RRVV  + DP+ +V+GRGL  LSQ 
Sbjct: 61  AGEKAKGATAYVTLEPCSHHGRTPPCAEALINAGVRRVVAAMQDPNPQVAGRGLYMLSQA 120

Query: 123 GIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI     ++  E +     +L R      ++ LK+A S D    +    S  IT   ++ 
Sbjct: 121 GIETASGVLMEEAESLNRGFLKRMRTAFPYVQLKLAASLDGKTALESGESKWITSAAARQ 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V +LRAQ+ AIL    TVLAD+P LT R N L               P+RI+LD H ++
Sbjct: 181 DVQVLRAQASAILSTSSTVLADNPSLTVRWNELPAEIHAVYPQSTLRQPIRIVLDNHNRV 240

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD-CRDLKKLLTILVGRGVTS 289
           + + K+  T L     +V    +P      + + + I   D   DL  L+  L  R V S
Sbjct: 241 TAEYKV--TQLAGECWLVRSQPEPDAVWQGQVEQLAIPSDDNGIDLVILMMQLAKRNVNS 298

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRD 344
           + VE G  +A S +   LVD +I+Y +  ++G+       IP+ L      + F      
Sbjct: 299 IWVEAGPILAGSLLKLGLVDELIVYIAPKLLGDTARGLVNIPA-LAHLSDAQKFEFTDVQ 357

Query: 345 YFGSDVCLEYIG 356
             G D+ +    
Sbjct: 358 KVGDDLRVRLRP 369


>gi|253687420|ref|YP_003016610.1| riboflavin biosynthesis protein RibD [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753998|gb|ACT12074.1| riboflavin biosynthesis protein RibD [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 378

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 126/369 (34%), Positives = 184/369 (49%), Gaps = 18/369 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D  +M+ AL  +R     T+ NP+V C+IV+DG ++G G     G PHAEV AL  AG
Sbjct: 11  PQDELYMARALELARRGRFTTAPNPNVGCVIVRDGDIVGEGYHFRAGEPHAEVHALRMAG 70

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+ +V+GRGL  L Q GI
Sbjct: 71  ERARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPQVAGRGLHRLQQAGI 130

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +    M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V
Sbjct: 131 AVSHGFMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDV 190

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSL 232
              RA+S AIL    TVLADDP LT R + L               P+R+I+D   +++ 
Sbjct: 191 QRFRAESAAILSSSATVLADDPSLTVRWSELGADVQTRYSEADLRQPVRVIVDSQRRVTP 250

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
             +I+         +     D        ++     +    DL  L+ +L  R + S+ V
Sbjct: 251 QHRIVSQPGE--TWLARVQADEQAWPQGVEQVTLPQHNGGVDLVALMMVLGRRQINSVWV 308

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGS 348
           E GA++A + +N+ +VD +I+Y +  ++GE      L  G  +      F        G 
Sbjct: 309 EAGASLAGALLNAGVVDELIVYLAPKLLGENARSLCLLPGLDQLSQAPEFDIAEVRQIGP 368

Query: 349 DVCLEYIGK 357
           D+ L    K
Sbjct: 369 DLRLRLKPK 377


>gi|153947163|ref|YP_001402077.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia pseudotuberculosis IP 31758]
 gi|152958658|gb|ABS46119.1| riboflavin biosynthesis protein RibD [Yersinia pseudotuberculosis
           IP 31758]
          Length = 369

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 128/367 (34%), Positives = 183/367 (49%), Gaps = 18/367 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     TS NP+V C++V+DG ++G G     G PHAEV AL  AGE+
Sbjct: 4   DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSHYGR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q GI +
Sbjct: 64  ARGATAYVTLEPCSHYGRTPPCADALVAAGVIRVVAAMQDPNPEVAGRGLYKLKQAGIAV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
            RA+S AIL    TVLADDP LT R   L               P++IILD H +++   
Sbjct: 184 FRAESSAILSTSATVLADDPSLTVRWQDLDTETQVLYPHNSIRQPVKIILDSHNRVTPRH 243

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           K+I+     P  +   + D        ++ +   Y +  DL  L+  L  R + S+ VE 
Sbjct: 244 KVIQQD--GPCWLARVDADDQPWPGNIEQLLLPRYGNGVDLVVLMMQLGKRNINSVWVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           G  +A + + + +VD +ILY +  ++G         + L        F        G D+
Sbjct: 302 GPQLAGALLQAGVVDELILYIAPKLLGSDARGLCELAGLTNLSQAPEFAFSDVRLVGPDL 361

Query: 351 CLEYIGK 357
            L    K
Sbjct: 362 RLRLKPK 368


>gi|110640675|ref|YP_668403.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli 536]
 gi|306813120|ref|ZP_07447313.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli NC101]
 gi|110342267|gb|ABG68504.1| riboflavin biosynthesis protein RibD [Escherichia coli 536]
 gi|305853883|gb|EFM54322.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli NC101]
 gi|307552319|gb|ADN45094.1| riboflavin biosynthesis protein RibD [Escherichia coli ABU 83972]
          Length = 361

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 127/362 (35%), Positives = 184/362 (50%), Gaps = 18/362 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+A+GA
Sbjct: 1   MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI +   +
Sbjct: 61  TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  LRAQ
Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKIIK 238
           S AIL    TVLADDP LT R + L E             P+RI++D   +++ + +I++
Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPEHRIVQ 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
                        +D        +  +   +    DL  L+  L  + + S+ VE G  +
Sbjct: 241 QPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTL 298

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           A + + + LVD +I+Y +  ++G           LE+      F      + G DVCL  
Sbjct: 299 AGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHL 358

Query: 355 IG 356
           +G
Sbjct: 359 VG 360


>gi|205374673|ref|ZP_03227467.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           [Bacillus coahuilensis m4-4]
          Length = 377

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 124/365 (33%), Positives = 187/365 (51%), Gaps = 9/365 (2%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  +     +M+ A++ ++   G TS NP V  +IV+DG ++G G     G PHAE+ AL
Sbjct: 1   MNNNQSHEFYMNMAIQNAKVMSGQTSPNPLVGAVIVRDGEIVGFGAHMKAGEPHAEIHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AG++A+GAT YVTLEPCSHYGR+ PCA  +IE GI  VVV   DP+  V+G G++ L 
Sbjct: 61  RMAGDKAKGATIYVTLEPCSHYGRTGPCAVALIEAGITNVVVATLDPNPIVAGNGVRILE 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI ++  +ME+E K     +    V  R  ITLK A S D  I      S  IT   +
Sbjct: 121 DAGIKVITGVMEAEAKRMNEVFNHFIVTGRPFITLKTASSLDGKIATHTHNSKWITCEGA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  VH +R   DAILVG  T+L D+P LT RL      +P+RII+D   K+ L+SK++  
Sbjct: 181 REDVHKMRNVYDAILVGANTILEDNPSLTTRLENTHGKNPIRIIIDSALKIPLNSKVLTD 240

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVTSLLVEGGA 296
                 I  ++  +     +  +   ++I        +L  ++  L    V+SL++EGG 
Sbjct: 241 KEAPTWIFTSKMVEETRVQSVERLGASVIKTSGTHQVNLHDVVNYLGKMNVSSLIIEGGG 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVC 351
            +  SF+  +LV   ++Y +  +IG    P+ LE   +       +   +     G D  
Sbjct: 301 TINSSFVEEKLVQKAVIYFAPKLIGGKEAPTFLEGKGVAIVSQAIDLENMTITSLGKDFK 360

Query: 352 LEYIG 356
           +E   
Sbjct: 361 IEGYP 365


>gi|218232159|ref|YP_002368101.1| riboflavin biosynthesis protein RibD [Bacillus cereus B4264]
 gi|218160116|gb|ACK60108.1| riboflavin biosynthesis protein RibD [Bacillus cereus B4264]
          Length = 367

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 123/355 (34%), Positives = 189/355 (53%), Gaps = 10/355 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M  AL  ++   G T+ NP V  +IV D  ++G G     G  HAE+ A+  AGE+A
Sbjct: 5   ELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGESHAEIHAIRMAGEQA 64

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           RG T YVTLEPCSH+GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++
Sbjct: 65  RGGTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVL 124

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             + E E K     +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +
Sbjct: 125 VGVCEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQI 184

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R ++ AILVG  TV  D+P LT R+      +P+R+ILD   ++ +++ ++        I
Sbjct: 185 RNENAAILVGANTVQKDNPSLTTRIP--NGRNPIRVILDSTLRIPMEANVVTDREAPTWI 242

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
             T N       A     + +         +L ++L +L  +GV+SLL+EGG  V  SFI
Sbjct: 243 FTTSNHAEEKKKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFI 302

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
            ++L+D IILY +  +IG    PS +E   + K    +       D+    IGK+
Sbjct: 303 ENKLMDKIILYFAPKIIGGRLAPSFVEGTGITKMKDAIEFK----DISFTQIGKD 353


>gi|222055764|ref|YP_002538126.1| riboflavin biosynthesis protein RibD [Geobacter sp. FRC-32]
 gi|221565053|gb|ACM21025.1| riboflavin biosynthesis protein RibD [Geobacter sp. FRC-32]
          Length = 368

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 116/370 (31%), Positives = 189/370 (51%), Gaps = 11/370 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++ F    M  A+  +R  VG T+ NP+V C+IVKDG ++G G     G PHAE+ AL +
Sbjct: 1   MTDFAENMMKRAVSLARKGVGKTAPNPAVGCVIVKDGAIVGEGWHRKAGTPHAEIHALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  A GA  +VTLEPCSH+G++PPCA  +I   + RV V + DP+ RV G+G+  L   
Sbjct: 61  AGALAEGADVFVTLEPCSHFGKTPPCADALIAAKVARVYVGMVDPNPRVCGKGISKLRAA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E + +     ++         + LK A++ D  I  AG  S  +T   S+ 
Sbjct: 121 GIQVEAPLLEEKCRALNEPFIKHVTTGLPFVILKTAMTMDGKIATAGMDSKWVTSEKSRR 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH LR++ D I+VG+GT++ DDP LT R+ G    +P+R+++D   ++  D+ ++    
Sbjct: 181 YVHKLRSELDVIMVGVGTIIKDDPLLTSRIPG--GRNPLRVVVDSKLRIPPDAHVLHCDS 238

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAA 297
            A  ++ T + D             ++ C    D  DL  L+  L  RGV S+L+EGGA 
Sbjct: 239 TAKTVVATISSDEAQVSRLAGLGAEVLSCGEDGDRVDLCCLMAKLGKRGVQSVLLEGGAE 298

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLE 353
           +A   +   ++D  + + +  ++   G+      G            V     G D+ ++
Sbjct: 299 LAGEALRKGIIDKCMFFYAPKLVAGDGLGPFAGNGAGKMADALKLQWVTVTKIGVDILVQ 358

Query: 354 YIGKNLCLQE 363
              + +CLQ 
Sbjct: 359 GYPEKICLQG 368


>gi|325282059|ref|YP_004254601.1| riboflavin biosynthesis protein RibD [Odoribacter splanchnicus DSM
           20712]
 gi|324313868|gb|ADY34421.1| riboflavin biosynthesis protein RibD [Odoribacter splanchnicus DSM
           20712]
          Length = 397

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 119/366 (32%), Positives = 189/366 (51%), Gaps = 12/366 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + D  +M+ A   +    G  + NP V  +IVKDG +IG G     G  HAE  A ++
Sbjct: 21  METKDREYMNRARILADRGRGWVNPNPLVGAVIVKDGRIIGEGWHERYGGLHAERNAFKQ 80

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
             E+  GAT YVTLEPC HYG++PPC + +IE  I RVVV + DP+  V+G+G++ L + 
Sbjct: 81  CTEDPAGATLYVTLEPCCHYGKTPPCTEAVIENRIARVVVGLLDPNPLVAGKGIEMLRKA 140

Query: 123 GIIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI+V+  +E E  +     +L     +R  I +K A++ D  I      S  +TG  S+ 
Sbjct: 141 GIVVETGVEEEKLREQNRVFLKYITTRRPWIVMKTAMTLDGKIAAYTGDSHWVTGEESRK 200

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +V  +R+    I+VG GTV ADDP L CRL G +   P+RII+D    ++ DS++++TA 
Sbjct: 201 KVQEMRSVLMGIMVGSGTVKADDPLLNCRLKG-EVRQPVRIIVDSTAAIATDSQLVRTAD 259

Query: 242 LAPVIIV-TENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGA 296
               ++  T   D    +  ++K +  I C       DL+ L T L   G+ S+L+EGG 
Sbjct: 260 RYRTLVAHTSRADAGKLVQLQQKGVETILCPGCDNRVDLQALTTKLGQAGIDSVLLEGGG 319

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVC 351
            +  +F+   LVD +  + +  +IG     +P+E   +           V  +  G D  
Sbjct: 320 ELNEAFLRQGLVDEVYAFIAPKLIGGKDAKTPVEGKGIAWMKEAIALQSVSIEKVGEDFL 379

Query: 352 LEYIGK 357
           ++   +
Sbjct: 380 IKGFPQ 385


>gi|255528573|ref|ZP_05395347.1| riboflavin biosynthesis protein RibD [Clostridium carboxidivorans
           P7]
 gi|296188130|ref|ZP_06856522.1| riboflavin biosynthesis protein RibD [Clostridium carboxidivorans
           P7]
 gi|255507738|gb|EET84204.1| riboflavin biosynthesis protein RibD [Clostridium carboxidivorans
           P7]
 gi|296047256|gb|EFG86698.1| riboflavin biosynthesis protein RibD [Clostridium carboxidivorans
           P7]
          Length = 370

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 123/365 (33%), Positives = 193/365 (52%), Gaps = 12/365 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D  +M  AL  +    G  + NP V  +IV +G ++G+G   + G PHAEV AL+EAG
Sbjct: 7   NLDEYYMKMALNLALKGQGNVNPNPLVGAVIVNNGNIVGQGYHKFYGGPHAEVYALKEAG 66

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E A+G   YV+LEPCSHYG++PPCA+ +++ GI++VV+ + DP+  V+G G++ L + G+
Sbjct: 67  ESAKGGELYVSLEPCSHYGKTPPCAEAVLKAGIKKVVIAMKDPNSLVAGNGIKLLEKNGV 126

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            ++  ++E E K     ++    EK   + LK A++ D  I      S  ITG  S+  V
Sbjct: 127 EVIVGVLEEEAKKVNEIFIKYITEKTPFVILKTAMTLDGKIATKTGESQWITGEESRKYV 186

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H +R +   I+ GIGT+  D+P LT R       SP  II+D    + ++SKI  T    
Sbjct: 187 HTIRNRVMGIMAGIGTIKKDNPLLTTRFIE-DGKSPTAIIVDSKLSIPVESKIFTTLNER 245

Query: 244 PVII-VTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAV 298
            +II  TE  D        +K I II         DLK L+  L   G+ S+L+EGG  +
Sbjct: 246 KIIIACTEEFDAKKKEELEQKGIKIIITPKDNNRVDLKYLMKELGKEGIDSILLEGGGEL 305

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLE 353
             S ++S++VD I+ + +  ++G     +P+E   +E     V  +       G D+ +E
Sbjct: 306 NFSALDSKIVDKILCFIAPKILGGASAKTPVEGSGIEILKNAVLINKMNCKNVGEDLLIE 365

Query: 354 YIGKN 358
               N
Sbjct: 366 GYFNN 370


>gi|145634121|ref|ZP_01789832.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
           PittAA]
 gi|145268565|gb|EDK08558.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
           PittAA]
          Length = 372

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 128/373 (34%), Positives = 195/373 (52%), Gaps = 20/373 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            SS D  FM  AL  +      T+ NPSV C++VK+G ++G G     G PHAE  AL +
Sbjct: 4   FSSQDHVFMQRALDLATKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQ 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+G TAYVTLEPCSHYGR+PPCA  +IE G+ +V+  + DP+ +V+G+GL+ LS  
Sbjct: 64  AGENAKGTTAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDA 123

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI     ++  + +     +L R  +    + LK+A+S D    MA   S  ITG  +++
Sbjct: 124 GIESAVNLLSDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGSDARS 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V  +RA+S A+L    T++ADDP L  R +   E             P+R+ILD   ++
Sbjct: 184 DVQKMRAKSSALLSTSATIIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHRI 243

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
               K+  T   +PV +V+  ++P     F      II      LK+L+  L  R + +L
Sbjct: 244 QPTHKLFLT--YSPVWLVS--NEPRDLTGFPDFCEQIILPKENLLKELMQELGRRQINTL 299

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYF 346
            VE GA +A S I+++LVD +I+Y +  ++G+          L +      +     +  
Sbjct: 300 WVEAGANLAGSLIDAKLVDELIIYVAPKLLGDNARGLCQLPNLTKLADAPLWQLNELEQI 359

Query: 347 GSDVCLEYIGKNL 359
           G D+ L Y  K +
Sbjct: 360 GDDIKLTYTPKGI 372


>gi|22124907|ref|NP_668330.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia pestis KIM 10]
 gi|45440597|ref|NP_992136.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia pestis biovar Microtus str. 91001]
 gi|51595284|ref|YP_069475.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia pseudotuberculosis IP 32953]
 gi|108808668|ref|YP_652584.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia pestis Antiqua]
 gi|108811070|ref|YP_646837.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia pestis Nepal516]
 gi|145600077|ref|YP_001164153.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia pestis Pestoides F]
 gi|149364971|ref|ZP_01887006.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia pestis CA88-4125]
 gi|162418167|ref|YP_001607523.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia pestis Angola]
 gi|165926574|ref|ZP_02222406.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165935961|ref|ZP_02224531.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011096|ref|ZP_02231994.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213091|ref|ZP_02239126.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398606|ref|ZP_02304130.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421644|ref|ZP_02313397.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423702|ref|ZP_02315455.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167470057|ref|ZP_02334761.1| riboflavin biosynthesis protein RibD [Yersinia pestis FV-1]
 gi|170025475|ref|YP_001721980.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia pseudotuberculosis YPIII]
 gi|186894301|ref|YP_001871413.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia pseudotuberculosis PB1/+]
 gi|218930213|ref|YP_002348088.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia pestis CO92]
 gi|229838788|ref|ZP_04458947.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229896058|ref|ZP_04511228.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Yersinia pestis Pestoides A]
 gi|229899356|ref|ZP_04514499.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229901297|ref|ZP_04516419.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Yersinia pestis Nepal516]
 gi|270489486|ref|ZP_06206560.1| riboflavin biosynthesis protein RibD [Yersinia pestis KIM D27]
 gi|294504911|ref|YP_003568973.1| riboflavin biosynthesis protein RibD (includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase)
           [Yersinia pestis Z176003]
 gi|21957743|gb|AAM84581.1|AE013703_11 bifunctional pyrimidine deaminase/reductase [Yersinia pestis KIM
           10]
 gi|45435454|gb|AAS61013.1| riboflavin biosynthesis protein RibD [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Yersinia pestis biovar Microtus str. 91001]
 gi|51588566|emb|CAH20174.1| bifunctional pyrimidine deaminase/reductase in pathway of
           riboflavin synthesis [Yersinia pseudotuberculosis IP
           32953]
 gi|108774718|gb|ABG17237.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Yersinia pestis Nepal516]
 gi|108780581|gb|ABG14639.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Yersinia pestis Antiqua]
 gi|115348824|emb|CAL21778.1| riboflavin biosynthesis protein RibD [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Yersinia pestis CO92]
 gi|145211773|gb|ABP41180.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Yersinia pestis Pestoides F]
 gi|149291384|gb|EDM41458.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Yersinia pestis CA88-4125]
 gi|162350982|gb|ABX84930.1| riboflavin biosynthesis protein RibD [Yersinia pestis Angola]
 gi|165916106|gb|EDR34713.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921502|gb|EDR38699.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990096|gb|EDR42397.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205878|gb|EDR50358.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960563|gb|EDR56584.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051110|gb|EDR62518.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167057872|gb|EDR67618.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752009|gb|ACA69527.1| riboflavin biosynthesis protein RibD [Yersinia pseudotuberculosis
           YPIII]
 gi|186697327|gb|ACC87956.1| riboflavin biosynthesis protein RibD [Yersinia pseudotuberculosis
           PB1/+]
 gi|229681226|gb|EEO77320.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Yersinia pestis Nepal516]
 gi|229687758|gb|EEO79831.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229695154|gb|EEO85201.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229700981|gb|EEO89010.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Yersinia pestis Pestoides A]
 gi|262362977|gb|ACY59698.1| riboflavin biosynthesis protein RibD (includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase)
           [Yersinia pestis D106004]
 gi|262366897|gb|ACY63454.1| riboflavin biosynthesis protein RibD (includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase)
           [Yersinia pestis D182038]
 gi|270337990|gb|EFA48767.1| riboflavin biosynthesis protein RibD [Yersinia pestis KIM D27]
 gi|294355370|gb|ADE65711.1| riboflavin biosynthesis protein RibD (includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase)
           [Yersinia pestis Z176003]
          Length = 369

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 128/367 (34%), Positives = 183/367 (49%), Gaps = 18/367 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     TS NP+V C++V+DG ++G G     G PHAEV AL  AGE+
Sbjct: 4   DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSHYGR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q GI +
Sbjct: 64  ARGATAYVTLEPCSHYGRTPPCADALVAAGVIRVVAAMQDPNPEVAGRGLYKLKQAGIAV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
            RA+S AIL    TVLADDP LT R   L               P++IILD H +++   
Sbjct: 184 FRAESSAILSTSATVLADDPSLTVRWQDLDAETQVLYPHDSVRQPVKIILDSHNRVTPRH 243

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           K+I+     P  +   + D        ++ +   Y +  DL  L+  L  R + S+ VE 
Sbjct: 244 KVIQQD--GPCWLARVDADDQPWPGNIEQLLLPRYGNGVDLVVLMMQLGKRNINSVWVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           G  +A + + + +VD +ILY +  ++G         + L        F        G D+
Sbjct: 302 GPQLAGALLQAGVVDELILYIAPKLLGSDARGLCELAGLTNLSQAPEFAFSDVRLVGPDL 361

Query: 351 CLEYIGK 357
            L    K
Sbjct: 362 RLRLKPK 368


>gi|119486402|ref|ZP_01620460.1| riboflavin biosynthesis protein [Lyngbya sp. PCC 8106]
 gi|119456304|gb|EAW37435.1| riboflavin biosynthesis protein [Lyngbya sp. PCC 8106]
          Length = 368

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 113/356 (31%), Positives = 177/356 (49%), Gaps = 9/356 (2%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAYGGCPHAEVQALEEA 63
            FD + M   L  +R  +G T+ NP V  ++V+D   +IG G     G PHAEV AL +A
Sbjct: 12  EFDRQMMLRCLELARQALGKTAPNPLVGSVVVQDNYNIIGEGFHPGAGQPHAEVFALRDA 71

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE+A+GAT YV LEPC+HYGR+PPC + +I+  + +VVV + DP+  V+G+G++ L Q G
Sbjct: 72  GEQAKGATVYVNLEPCNHYGRTPPCTEALIKAKVAKVVVGMIDPNPLVAGQGVERLKQAG 131

Query: 124 IIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   +E E        ++ R +  +     K A++ D  I      S  IT   ++ Q
Sbjct: 132 IEVIVGVEQEACQQLNEGFIHRILHHQPLGIFKYAMTLDGKIATTTGHSAWITSPTARQQ 191

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LR   DA++VG  TV  D+P LT    G  E +P+R+++     L L + +      
Sbjct: 192 VHQLRVACDAVIVGGNTVRRDNPHLTTHNQG--EPNPLRVVMSRKLDLPLQANLWDITEA 249

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             ++  T++ DP      +KK + ++       K ++  L  R   S+L E G  +A   
Sbjct: 250 NTLVFTTKDADPDCQEQLQKKGVEVVVLSPLTPKTVMAHLYERQFLSVLWECGGTLAAQA 309

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
           I    +  I+ + +  +IG     SP+ +  L +         V     GSD  +E
Sbjct: 310 IAEGAIQKILAFIAPKIIGGKTASSPVGDLGLTQMNEALTLKRVTLHSIGSDYLIE 365


>gi|288555991|ref|YP_003427926.1| riboflavin specific deaminase [Bacillus pseudofirmus OF4]
 gi|288547151|gb|ADC51034.1| riboflavin specific deaminase [Bacillus pseudofirmus OF4]
          Length = 360

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 131/358 (36%), Positives = 181/358 (50%), Gaps = 7/358 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ AGE+
Sbjct: 3   DIDYMKLALTLAEQTRGQTSPNPMVGSVVVKDGAIVGMGAHLKAGEGHAEVNALKMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GAT YVTLEPCSHYG++PPCA  IIE  ++RVVV   DP+  VSGRG++ L   GI +
Sbjct: 63  AEGATIYVTLEPCSHYGKTPPCADLIIEKQLKRVVVATVDPNPEVSGRGIKRLRDSGITV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              + E+E       +      KR  +T+K A + D         S  ITG  ++  VH 
Sbjct: 123 DVGVCEAEAIELNRMFFHFIQTKRPFVTMKTASTLDGKTATVTGESKWITGEEARLDVHR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVGIGTVL+D+P LT RL      +P+RIILD H +L   S++         
Sbjct: 183 DRHIHDAILVGIGTVLSDNPALTTRLPNG-GRNPIRIILDRHLRLPESSQVACDQAAKTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           +  TE+       A R   +++I      +  +L  L  R V +L VEGG  V  SFI  
Sbjct: 242 VFTTEHASSEKEEALRMLGVDVIRLRDYSIPSILKELGKRRVMTLYVEGGQEVNGSFIKE 301

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
           R V+ +I Y +  +IG    P+ +    +           +     G D+ +  + K 
Sbjct: 302 RAVNQVITYVAPKMIGGKNAPTSVGGEGIPSINQALELQVIDVVQVGQDIKITSLVKE 359


>gi|323164205|gb|EFZ50012.1| riboflavin biosynthesis protein RibD [Shigella sonnei 53G]
 gi|323170496|gb|EFZ56146.1| riboflavin biosynthesis protein RibD [Escherichia coli LT-68]
          Length = 361

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 126/362 (34%), Positives = 183/362 (50%), Gaps = 18/362 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+A+GA
Sbjct: 1   MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI +   +
Sbjct: 61  TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V   RAQ
Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQRAQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKIIK 238
           S AIL    TVLADDP LT R + L E             P+RI++D   +++ + +I++
Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHRIVQ 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
                        +D        +  +   +    DL  L+  L  + + S+ VE G  +
Sbjct: 241 QPGE--TWFARTQEDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTL 298

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           A + + + LVD +I+Y +  ++G           LE+      F      + G DVCL  
Sbjct: 299 AGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHL 358

Query: 355 IG 356
           +G
Sbjct: 359 VG 360


>gi|229061784|ref|ZP_04199117.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH603]
 gi|228717530|gb|EEL69194.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH603]
          Length = 379

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 187/368 (50%), Gaps = 12/368 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++   G TS NP V  ++VKD  ++G G     G  HAEV AL  AGE 
Sbjct: 12  DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKDSNIVGMGAHMRAGEEHAEVHALHMAGER 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +IE  ++RVV+   D +  VSG G + L +  I +
Sbjct: 72  AKGATVYVTLEPCSHFGKTPPCCELLIEKEVQRVVIATLDCNPLVSGNGKRKLEEAAIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E  +    +      K+  +T+K A+S D         S  ITG  ++  VH 
Sbjct: 132 TTGVLEAEATLLNRYFFHYMKTKQPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DAILVG+ TVL D+P LT R+       P+R+ILD H +    S +I   L    
Sbjct: 192 YRHIHDAILVGVNTVLTDNPHLTTRIPNG-GKHPIRVILDTHLRTPPSSHVITDGLTPTW 250

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           IIV ++ +     ++   NI +     +  +++ +L++L  + + SL VEGG  V  +F+
Sbjct: 251 IIVGKDVNKEKIASYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFVEGGQTVHANFL 310

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
            +   + I+ Y S  +IG    P+        K     +         G+D+ +    K+
Sbjct: 311 KTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKLQDALSLTIQEMKQIGNDIKIVATLKS 370

Query: 359 ---LCLQE 363
               CLQE
Sbjct: 371 EVTECLQE 378


>gi|319897565|ref|YP_004135762.1| riboflavin biosynthesis protein ribd [Haemophilus influenzae F3031]
 gi|317433071|emb|CBY81445.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae F3031]
          Length = 372

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 127/373 (34%), Positives = 193/373 (51%), Gaps = 20/373 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           +  SS D  FM  AL  +      T+ NPSV C++VK+G ++G G     G PHAE  AL
Sbjct: 2   LEFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVAL 61

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AGE A+GATAYVTLEPC+HYGR+ PCA  +IE G+ +V+  + DP+ +V+G+GL+ LS
Sbjct: 62  AQAGENAKGATAYVTLEPCAHYGRTSPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLS 121

Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI     ++  + +     +L R  +    + LK+A+S D    MA   S  IT   +
Sbjct: 122 DAGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITSPDA 181

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228
           ++ V  +RA+S A+L    TV+ADDP L  R +   E             P+R+ILD   
Sbjct: 182 RSDVQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQH 241

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           ++    K+  T   +PV +V+   +P     F      II      LK+L+  L  R + 
Sbjct: 242 RIQPTHKLFLT--HSPVWLVSS--EPRDLTGFPDFCEQIILPKENLLKELMRELGKRQIN 297

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344
           +L VE GA +A S I+++LVD +I+Y +  ++G+          L +      +     +
Sbjct: 298 TLWVEAGANLAGSLIDAKLVDELIIYVAPKLLGDNARGLCQLPNLTKLADAPLWQLNELE 357

Query: 345 YFGSDVCLEYIGK 357
             G D+ L Y  K
Sbjct: 358 QIGDDIKLTYTPK 370


>gi|306820099|ref|ZP_07453747.1| riboflavin biosynthesis protein RibD [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551877|gb|EFM39820.1| riboflavin biosynthesis protein RibD [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 365

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 118/362 (32%), Positives = 178/362 (49%), Gaps = 12/362 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   D ++M  A+  ++  +G TS NP V  +IVKD  +IGRG     G  HAEV AL+ 
Sbjct: 2   LKDIDKKYMKLAIDLAKNGIGRTSPNPIVGAVIVKDNQIIGRGWHEKYGEAHAEVNALDN 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                 GAT YVTLEPC H+G+ PPC   IIE GI  VV+   DP+ +VSG+G Q L   
Sbjct: 62  CQVSPNGATMYVTLEPCCHFGKQPPCTSKIIESGISHVVIGSFDPNPQVSGKGSQILKNS 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
            I +   +++ E       +       R ++ LK A++ D  I      S  ITG  ++ 
Sbjct: 122 EIKVTQSVLQRECDELNTVFFHYIKTNRPYVILKYAMTADGKIATYTGESKWITGEKARK 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           QVH  R +  AI+VG+GTVL D+P L CR+     ++P+R+I D   +    S ++KTA 
Sbjct: 182 QVHRDRDRYSAIMVGVGTVLKDNPMLNCRIE--NGNNPLRVICDTKLRTPFTSNVVKTAS 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
             P +I T ++D      +      +I         DL +L+ +L    + S++VEGGA 
Sbjct: 240 EIPTLIATASEDNARWRQYEAYGCKLIKIPKDGESIDLVELIKVLGENKIDSVIVEGGAK 299

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCL 352
           +  S + + L++ + +Y    + G     +P+    L      V         F  D  L
Sbjct: 300 LNWSILKASLMNKVQVYVGAKLFGGANAKTPIAGDGLAFPNESVSMKLSSISKFDDDCLL 359

Query: 353 EY 354
           EY
Sbjct: 360 EY 361


>gi|317128514|ref|YP_004094796.1| riboflavin biosynthesis protein RibD [Bacillus cellulosilyticus DSM
           2522]
 gi|315473462|gb|ADU30065.1| riboflavin biosynthesis protein RibD [Bacillus cellulosilyticus DSM
           2522]
          Length = 362

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 124/355 (34%), Positives = 182/355 (51%), Gaps = 9/355 (2%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D ++M  A+  ++   G T+ NP V  +IV +  ++G G     G  HAE  A+E A +
Sbjct: 1   MDNKYMKMAIELAKVTEGHTTPNPVVGAVIVNNNQIVGFGAHLKAGEHHAEKHAIEMAKD 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +  GAT YVTLEPCSHYGR+PPCA  +IE GI++V++   DP+ +VSGRG++ L   GI 
Sbjct: 61  KTEGATIYVTLEPCSHYGRTPPCADAVIEAGIKKVIIGSVDPNPKVSGRGIKKLEDAGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +    M+ E       +      K+  +TLK A S D  I      S  IT   S+  VH
Sbjct: 121 VEVGCMKEETDKLNDVFFHFVNTKKPFVTLKSATSLDGKIATRTGESQWITSEESRKDVH 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR ++DAILVGI TV+ DDP LT RL      +P+R+ILD   ++ + +K+I       
Sbjct: 181 QLRHKNDAILVGINTVIKDDPALTTRLPDG-GKNPIRVILDRELRIPMTAKLINDHASLT 239

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            +I T   +       R K   ++  D    ++  LL +L    +TSLLVEGG  V  SF
Sbjct: 240 WVITTRLANKEKIDLLRDKGTKVLILDDDKIEISSLLYLLGEHNITSLLVEGGGTVNDSF 299

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCL 352
           + S     +I+Y + ++IG     S      +E     K       +  G+D+ L
Sbjct: 300 LKSGEFQQVIVYIAPLLIGGEDALSSFSGSGIEKLADAKKLKVQSLEQIGNDIKL 354


>gi|229080603|ref|ZP_04213123.1| Riboflavin biosynthesis protein [Bacillus cereus Rock4-2]
 gi|228702704|gb|EEL55170.1| Riboflavin biosynthesis protein [Bacillus cereus Rock4-2]
          Length = 360

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 124/352 (35%), Positives = 189/352 (53%), Gaps = 10/352 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  ++   G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARG 
Sbjct: 1   MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGG 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPCSH+GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  +
Sbjct: 61  TIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            E E K     +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R +
Sbjct: 121 CEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNE 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           + AILVG  TV  D+P LT R+      +P+R+ILD   ++ +++ ++        I  T
Sbjct: 181 NAAILVGANTVQKDNPSLTTRIP--NGRNPIRVILDSTLRIPMEANVVTDREAPTWIFTT 238

Query: 250 ENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
            N       A     + +         +L ++L +L  +GV+SLL+EGG  V  SFI ++
Sbjct: 239 SNHAEEKKKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIENK 298

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           L+D IILY +  +IG    PS +E   + K    +       D+    IGK+
Sbjct: 299 LMDKIILYFAPKIIGGRLAPSFVEGTGITKMKDAIEFK----DISFTQIGKD 346


>gi|238795566|ref|ZP_04639081.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
           mollaretii ATCC 43969]
 gi|238720685|gb|EEQ12486.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
           mollaretii ATCC 43969]
          Length = 369

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 123/367 (33%), Positives = 183/367 (49%), Gaps = 18/367 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     T  NP+V C++V+DG ++G G     G PHAEV AL  AGE+
Sbjct: 4   DEFYMARAFELARMGCFTTPPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+ +V+GRGL  L Q GI +
Sbjct: 64  AHGATAYVTLEPCSHHGRTPPCADALVAAGVIRVVAAMQDPNPQVAGRGLYKLKQAGIAV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
            RA+S AIL    TVLAD+P LT R + L               P+RIILD   +++   
Sbjct: 184 FRAESAAILSTSATVLADNPSLTVRWDELDAETQTLYPRAALRQPIRIILDSQNRVTPQH 243

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           K+I+     P  +   + D        ++ +   + +  DL  L+  L  R + S+ VE 
Sbjct: 244 KVIQQD--GPCWLARVDADEQPWPENIEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           G  +A + + + +VD +ILY +  ++G         + L        F+       G D+
Sbjct: 302 GPQLAGALLEAGVVDELILYIAPKLLGSDARGLCELAGLTSLSQAPEFVFSDVRQVGPDL 361

Query: 351 CLEYIGK 357
            L    K
Sbjct: 362 RLRLKPK 368


>gi|157694276|ref|YP_001488738.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Bacillus pumilus SAFR-032]
 gi|157683034|gb|ABV64178.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Bacillus pumilus SAFR-032]
          Length = 363

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 122/367 (33%), Positives = 194/367 (52%), Gaps = 13/367 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           MP      R+M+ AL  +R   G TS NP V  +IV++  ++G G     G PHAE+ AL
Sbjct: 1   MP---HHERYMNLALENARAMKGQTSPNPLVGAVIVRENEIVGVGAHMKAGEPHAEIHAL 57

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           + AG++A+GAT YVTLEPCSH+GR+ PCA+ +++ G+  VVV   DP+  V+GRG+  L 
Sbjct: 58  KMAGDKAKGATIYVTLEPCSHHGRTGPCAEALVKAGVETVVVAALDPNPLVAGRGIAILQ 117

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI ++  ++E E  +    +     +K   +TLK  ++ D  I  A   S  IT   S
Sbjct: 118 DAGIQVITGVLEQESILMNEVFNHFITKKTPFVTLKAGITLDGKIASATSDSKWITSETS 177

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H +R+ +DAILVG  TV+ DDP LT R+     + P+RI+LD      L +KI+  
Sbjct: 178 RYDAHHIRSINDAILVGAQTVIHDDPSLTARIP--NGNHPIRIVLDSKLSTPLTAKIVTD 235

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD---LKKLLTILVGRGVTSLLVEGGA 296
            +    I  T+  D     A     +++   D      L+++L +L  + V+SL++EGG 
Sbjct: 236 QMAPTWIFTTKQADEEKRAALEAAGVSVFVTDSETRVPLQEVLQMLGEKNVSSLMIEGGG 295

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
            +  SF+  +LVD +++Y +  +IG    PS      +      +  D       +E +G
Sbjct: 296 QINASFLEQQLVDKLVIYMAPKLIGGRLSPSFFGGEGIRLMSDAIELDQL----SVETLG 351

Query: 357 KNLCLQE 363
           K++ +  
Sbjct: 352 KDIKITG 358


>gi|229843994|ref|ZP_04464135.1| hypothetical protein CGSHi6P18H1_06131 [Haemophilus influenzae
           6P18H1]
 gi|229812988|gb|EEP48676.1| hypothetical protein CGSHi6P18H1_06131 [Haemophilus influenzae
           6P18H1]
          Length = 372

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 128/375 (34%), Positives = 196/375 (52%), Gaps = 20/375 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           +  SS D  FM  AL  +      T+ NPSV C++VK+G ++G G     G PHAE  AL
Sbjct: 2   LEFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVAL 61

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AGE A+GA AYVTLEPCSHYGR+PPCA  +IE G+ +V+  + DP+ +V+G+GL+ LS
Sbjct: 62  AQAGENAKGAIAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLS 121

Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI     ++  + +     +L R  +    + LK+A+S D    MA   S  ITG  +
Sbjct: 122 DAGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGSDA 181

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228
           ++ V  +RA+S A+L    T++ADDP L  R +   E             P+R+ILD   
Sbjct: 182 RSDVQKMRAKSSALLSTSATIIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQH 241

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           ++    K+  T   +PV +V+  ++P     F      II      LK+L+  L  R + 
Sbjct: 242 RIQPTHKLFLT--HSPVWLVS--NEPRDLTGFPDFCEQIILPKENLLKELMQELGRRQIN 297

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344
           +L VE GA +A S I+++LVD +I+Y +  ++G+          L +      +     +
Sbjct: 298 TLWVEAGANLAGSLIDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNELE 357

Query: 345 YFGSDVCLEYIGKNL 359
             G D+ L Y  K +
Sbjct: 358 QIGDDIKLTYTPKGI 372


>gi|300871035|ref|YP_003785907.1| riboflavin biosynthesis protein RibD [Brachyspira pilosicoli
           95/1000]
 gi|300688735|gb|ADK31406.1| riboflavin biosynthesis protein, RibD [Brachyspira pilosicoli
           95/1000]
          Length = 365

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 119/364 (32%), Positives = 181/364 (49%), Gaps = 16/364 (4%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
            ++M  A+  ++   G TS NP V  +IVKD  VIG G     G  HAE+ A   A   G
Sbjct: 3   EKYMRMAIEEAKKGEGFTSPNPLVGAVIVKDDRVIGIGYHKKYGENHAEINAFLNAKENG 62

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E+  GA+ YVTLEPCSHYG++PPCA  II+  +++V++   D + +V+G G++ L   GI
Sbjct: 63  EDVEGASIYVTLEPCSHYGKTPPCADAIIKNKLKKVIIGCVDSNPKVAGNGIKKLKDAGI 122

Query: 125 IVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V   +  E        +      K   + +K A++ D  I      S  IT   ++   
Sbjct: 123 EVVVNVLEEECRKLNEVFFYYIANKIPFVVMKYAMTMDGKIATVSGKSKWITSEKTREHS 182

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  R +  AI+VGI TV+ D+P L CRL      +P+RIILD   K+SLDS I KT+   
Sbjct: 183 HRFRNKYSAIMVGINTVIEDNPMLNCRLP--NTRNPIRIILDSSLKISLDSNICKTSKDI 240

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILV-GRGVTSLLVEGGAAV 298
              I T + D           + II  +  +    LK+L+ IL   + + S+ VEGGA++
Sbjct: 241 KTFIATVSGDEKKIKELEGLGVEIIKTESDNGRVSLKELMKILGEEKNIDSVYVEGGASL 300

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLE 353
             S +  +LV+  ++Y +  + G     SP+    +++    +R           D+ LE
Sbjct: 301 HASLLKEKLVNKALVYIAPKIFGGFEAKSPIGGEGIDEPDNAIRLVGNSITKIEEDLFLE 360

Query: 354 YIGK 357
           Y  K
Sbjct: 361 YYLK 364


>gi|325508006|gb|ADZ19642.1| Riboflavin biosynthesis protein RIBD (pirimidine deaminase and
           pirimidine reductase) [Clostridium acetobutylicum EA
           2018]
          Length = 365

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 115/356 (32%), Positives = 187/356 (52%), Gaps = 11/356 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             FM  AL  +    G  + NP V  +IVKD  ++G G     G  HAEV AL  AG++A
Sbjct: 3   EAFMKRALEIAEKGSGYVNPNPMVGAVIVKDNKIVGEGYHEKFGGNHAEVNALNMAGKDA 62

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
            G+  YVTLEPCSHYG++PPCA  +++ GI+RV++ ++DP+  VS +G++ L + GI ++
Sbjct: 63  EGSELYVTLEPCSHYGKTPPCALAVVKAGIKRVIIAMEDPNPLVSTKGIKILKENGIEVI 122

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +M+ E +     ++     KR  IT+K+A + D  I      S  I+G  S+  VH L
Sbjct: 123 TGVMKKESEKLNEVFIKYITTKRPFITMKMASTLDGKICTVSGESRWISGQTSRKYVHHL 182

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R++  +I+VG+GT + D+P LT R+ G    SP+ II+D   ++  D +I  T     +I
Sbjct: 183 RSKYMSIMVGVGTAINDNPLLTTRIEGENVRSPIAIIVDSKLRVPKDLRIFNTLQERKII 242

Query: 247 IVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           I T    D           ++II    +    +L  LL  L   G+ S+L+EGG+ +  S
Sbjct: 243 IATTEYADKNKENELINMGVSIIKTPNKNGRVNLDYLLDELGKIGIDSVLLEGGSELNFS 302

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR-----DYFGSDVCL 352
           FI    +D I+ + + +++G       +    +EK    ++      +  G D+ +
Sbjct: 303 FIKEENIDKIMCFIAPMIVGGEKAKGAVGGKGIEKLKDSIKIYDMDSEKIGEDILV 358


>gi|15893879|ref|NP_347228.1| riboflavin biosynthesis protein RIBD (pirimidine deaminase and
           pirimidine reductase) [Clostridium acetobutylicum ATCC
           824]
 gi|15023459|gb|AAK78568.1|AE007574_6 Riboflavin biosynthesis protein RIBD (pirimidine deaminase and
           pirimidine reductase) [Clostridium acetobutylicum ATCC
           824]
          Length = 383

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 115/356 (32%), Positives = 187/356 (52%), Gaps = 11/356 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             FM  AL  +    G  + NP V  +IVKD  ++G G     G  HAEV AL  AG++A
Sbjct: 21  EAFMKRALEIAEKGSGYVNPNPMVGAVIVKDNKIVGEGYHEKFGGNHAEVNALNMAGKDA 80

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
            G+  YVTLEPCSHYG++PPCA  +++ GI+RV++ ++DP+  VS +G++ L + GI ++
Sbjct: 81  EGSELYVTLEPCSHYGKTPPCALAVVKAGIKRVIIAMEDPNPLVSTKGIKILKENGIEVI 140

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +M+ E +     ++     KR  IT+K+A + D  I      S  I+G  S+  VH L
Sbjct: 141 TGVMKKESEKLNEVFIKYITTKRPFITMKMASTLDGKICTVSGESRWISGQTSRKYVHHL 200

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R++  +I+VG+GT + D+P LT R+ G    SP+ II+D   ++  D +I  T     +I
Sbjct: 201 RSKYMSIMVGVGTAINDNPLLTTRIEGENVRSPIAIIVDSKLRVPKDLRIFNTLQERKII 260

Query: 247 IVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           I T    D           ++II    +    +L  LL  L   G+ S+L+EGG+ +  S
Sbjct: 261 IATTEYADKNKENELINMGVSIIKTPNKNGRVNLDYLLDELGKIGIDSVLLEGGSELNFS 320

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR-----DYFGSDVCL 352
           FI    +D I+ + + +++G       +    +EK    ++      +  G D+ +
Sbjct: 321 FIKEENIDKIMCFIAPMIVGGEKAKGAVGGKGIEKLKDSIKIYDMDSEKIGEDILV 376


>gi|125624336|ref|YP_001032819.1| riboflavin biosynthesis protein RibD [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|44662840|gb|AAS47500.1| riboflavin-specific deaminase/reductase [Lactococcus lactis subsp.
           cremoris NZ9000]
 gi|124493144|emb|CAL98108.1| riboflavin biosynthesis protein RibD [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071120|gb|ADJ60520.1| riboflavin biosynthesis protein RibD [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 362

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 119/359 (33%), Positives = 188/359 (52%), Gaps = 12/359 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D  FM+ A+  +R   G  + NP V  +IV DG +IG+G     G  HAE+ A +   
Sbjct: 2   ENDEHFMNLAILLARKGGGNVNPNPQVGAIIVNDGRIIGQGYHEKYGEAHAEINAFKSCI 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E   G+T YVTLEPC+H G+ PPC + II+  ++RVV+   DP+  V+G+G++ + + GI
Sbjct: 62  ESPEGSTIYVTLEPCAHQGKQPPCFEAIIKNKVKRVVIGSLDPNPLVAGKGIEAMKKAGI 121

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +  +++E E K     +     ++  ++ +K A++ D  I      S  ITG  ++ +V
Sbjct: 122 DVSLKVLEKECKDLNKIFFHYVTQRTPYVMMKYAMTLDGKIATYKGQSKWITGEKARQKV 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  R++  AI++G+ T+L DDP+LT R+      +P+RII D   +  L SKI+ TA   
Sbjct: 182 HEDRSRFMAIMIGVETLLKDDPQLTARI--KNGINPIRIICDTQLRTPLTSKIVSTAFEI 239

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVA 299
           P II T N++     AF +    I+         DLK L+T L  R + SL++EGGA + 
Sbjct: 240 PTIIATSNENIQKHQAFIEAGCEILLVSSISKHLDLKDLITKLGEREIDSLILEGGARLN 299

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLE 353
            S + + +V  +  Y +  + G    PS +E   +E        D     Y G D+ LE
Sbjct: 300 ASALKAGIVQKVQAYIAPKIFGGKEAPSSVEGLGVEHPDQAYLLDRPQVAYLGEDILLE 358


>gi|188534657|ref|YP_001908454.1| Riboflavin biosynthesis protein RibD [Erwinia tasmaniensis Et1/99]
 gi|188029699|emb|CAO97578.1| Riboflavin biosynthesis protein RibD [Erwinia tasmaniensis Et1/99]
          Length = 367

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 124/366 (33%), Positives = 182/366 (49%), Gaps = 18/366 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL  +R     T+ NP+V C++V+D  ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEVYMARALELARRGRFTTTPNPNVGCVLVRDDQIVGEGYHLRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           +RGAT YVTLEPCSH+GR+PPC   +I  G++RVV  + DP+ +V+GRGL  L Q GI +
Sbjct: 63  SRGATVYVTLEPCSHHGRTPPCCDALIAAGVKRVVTAMQDPNPQVAGRGLYRLQQAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M  E +     +L R       + LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMQEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPEARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
           LRAQS AIL   GTVLAD+P LT R + L               P+R+I+D   +++   
Sbjct: 183 LRAQSSAILSTSGTVLADNPALTVRHDELDSASLADYPVNLLRQPIRVIVDGQNRITPQH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           ++I  A      +   +  P        + I   + D  DL  +L +L  + + SL VE 
Sbjct: 243 RLI--AQPGETWLARTSSCPQQWPENVSQLIVPRHQDRLDLVSMLMLLGKKQINSLWVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           GA  A + + + +VD +I+Y +  ++G+ G        LE       F        G D+
Sbjct: 301 GAQFAGALLQAGVVDELIVYMAPKLLGDAGRALCQLPGLETLAAAPAFTFSDIRQVGPDL 360

Query: 351 CLEYIG 356
            L    
Sbjct: 361 RLTLTP 366


>gi|188584764|ref|YP_001916309.1| riboflavin biosynthesis protein RibD [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349451|gb|ACB83721.1| riboflavin biosynthesis protein RibD [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 380

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 192/369 (52%), Gaps = 16/369 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M  AL  +    G T+ NP V  ++VK+  ++ +G     G PHAE  ALE+AG E
Sbjct: 8   DRQYMDRALDLAWKGWGKTNPNPLVGAVLVKNDDIVAQGYHGRLGGPHAEAVALEKAGRE 67

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A G T YVTLEPC HYG++PPC   IIE G++RVV+   DP  +++G+G++ L Q GI +
Sbjct: 68  ASGTTMYVTLEPCCHYGKTPPCTDKIIEAGVKRVVIASLDPHEKMAGKGVKKLRQAGIKV 127

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              + ++E +     +    V    ++  K  +S D  I      S  IT   ++   H 
Sbjct: 128 EVGLKKAEAEKQNEIFRKYIVTGLPYMIGKWGMSLDGKIATHTGDSRWITSEKARFDTHR 187

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRA+  AI+VGIGTV ADDP LTCR        P+RI++D H +LSL SK+++     P 
Sbjct: 188 LRARVAAIMVGIGTVKADDPLLTCRHPNYPGQHPVRIVVDSHLRLSLQSKVLEKISETPT 247

Query: 246 IIVTENDDP------VLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEG 294
           II T  +         +A         ++Y         D+ +L+ +L  RG+ S+LVEG
Sbjct: 248 IIATSEEIKHKSKEMEIAKQIENLGGEVLYLPQTSTGKVDIFELVKLLGQRGLDSVLVEG 307

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           G  +  S I +   D  I+Y   +VIG    P+P+      K F  ++     +++  EY
Sbjct: 308 GETLHGSLIEANYYDKYIVYLGNLVIGGTNSPTPVGG----KGFQALKDSVMLNNMEYEY 363

Query: 355 IGKNLCLQE 363
            G ++ ++ 
Sbjct: 364 FGDSIRIEA 372


>gi|118580019|ref|YP_901269.1| riboflavin biosynthesis protein RibD [Pelobacter propionicus DSM
           2379]
 gi|118502729|gb|ABK99211.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pelobacter
           propionicus DSM 2379]
          Length = 367

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 124/366 (33%), Positives = 199/366 (54%), Gaps = 11/366 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D R M  AL  +R  +G TS NP+V C+IVKDG+++G G     G  HAE+ ALE AG
Sbjct: 2   TDDIRQMKRALALARRGIGKTSPNPAVGCVIVKDGVIVGTGWHRKAGTSHAEIHALEMAG 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGA  +VTLEPC H G++PPC+Q +I  G+RRVV  + DP+ RVSG GL  L   GI
Sbjct: 62  ESARGADVFVTLEPCCHTGKTPPCSQALIRAGVRRVVAGMSDPNPRVSGGGLAELETAGI 121

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +V  ++E E +     ++ +      H+T K A++ D  I      S  I+   S+  V
Sbjct: 122 QVVCGVLEKECRDLNRPFIKQVTTGMPHVTYKCAMTLDGKIATVSGASRWISCQESRTLV 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H +RA+ DAI+VG+ T++ADDP+LT R   ++  +P+R+++D   +     +++      
Sbjct: 182 HRMRARMDAIMVGVDTIIADDPQLTVR--HVRGRNPLRVVVDTRLRTPESVRVLGDGNAV 239

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVA 299
             +I T   +P + L ++ +   I+ CD  +    +K L+  L  RGV S+L+EGG  +A
Sbjct: 240 NTLIATAETNPRVHLRYQNQGATILVCDQENGRVSMKDLMFKLGKRGVQSILLEGGGRLA 299

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCVRRDYFGSDVCLEYI 355
            S +   L+D  + + +  ++G  G    S +    +E+      ++    G D+ +   
Sbjct: 300 GSMLEQGLIDEFVFFLAPKILGSDGFSPFSLVGRTSMEQASRLNIIKVSRSGIDIVVHAR 359

Query: 356 GKNLCL 361
            +  C 
Sbjct: 360 SEAPCS 365


>gi|144897824|emb|CAM74688.1| Riboflavin biosynthesis protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 370

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 148/364 (40%), Positives = 213/364 (58%), Gaps = 10/364 (2%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
            +S  D   M AAL  ++  +G    NP+V C+IV DG V+GRG T  GG PHAE +AL 
Sbjct: 5   TISDGDRAHMRAALALAKRGLGNVWPNPAVGCVIVADGRVVGRGWTQPGGRPHAETEALA 64

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG  ARG TAYVTLEPCSH+G++PPCA+ ++  GIRRVVV + DPD RV+GRG+  L  
Sbjct: 65  MAGALARGGTAYVTLEPCSHHGKTPPCAEALVAAGIRRVVVAIQDPDPRVAGRGIALLQA 124

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            G+ +V  +M  E       +L++    R  +T+K+A + D  I   G  S  ITG  ++
Sbjct: 125 AGLSVVTGVMAEEAAELNAGFLSKVTRGRPLVTVKLATTLDGRIATHGGESRWITGAAAR 184

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              HLLRA++DAI+VG GTVLADDPELTCRL GL E SP+RI++D   +L L SK++ TA
Sbjct: 185 QAGHLLRAETDAIMVGSGTVLADDPELTCRLPGLSERSPVRIVVDGRLRLPLTSKLVSTA 244

Query: 241 LLAPVIIVT-ENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGG 295
                 ++T E  +     A+ +  ++++         DL + + +L   G+T +LVEGG
Sbjct: 245 NDVATWVLTQEGAEQDRREAYEESGVDVVELPANDQGLDLDQAMRVLAESGITRVLVEGG 304

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVC 351
           A +  + +   LVD ++ +R+  V+G  G+P+ +  G         F CV     G+D+ 
Sbjct: 305 AHLTATLLRQGLVDRLVWFRAARVMGGDGLPAAVSFGVDHLSQMPGFECVDVRRIGADLV 364

Query: 352 LEYI 355
             Y 
Sbjct: 365 ENYR 368


>gi|225181336|ref|ZP_03734780.1| riboflavin biosynthesis protein RibD [Dethiobacter alkaliphilus AHT
           1]
 gi|225167917|gb|EEG76724.1| riboflavin biosynthesis protein RibD [Dethiobacter alkaliphilus AHT
           1]
          Length = 367

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 125/359 (34%), Positives = 191/359 (53%), Gaps = 12/359 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D R+M  AL  +    G TS NP V  ++VKDG  +G G     G PHAE+ ALEEAG
Sbjct: 2   DADERYMWLALDLAAQGQGTTSPNPMVGAVLVKDGETVGTGYHQKAGGPHAEIIALEEAG 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGAT YVTLEPCSH G++PPC   II  G+R+VVV + DP+  V+G GL+ L + GI
Sbjct: 62  EAARGATLYVTLEPCSHTGKTPPCVDRIIAAGVRKVVVAMQDPNELVNGLGLKKLQEAGI 121

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++E +       ++     +R  +T+K A++ D  I      S  I+G  S+   
Sbjct: 122 KVKSGVLEEKALRLNEVFVKYITSRRPFVTMKAAMTMDGKIATRTKASRWISGERSREFG 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H LR  +DAI+VGIGT+LAD+P LT RL      +P+RI++D      LDSK++      
Sbjct: 182 HRLRHHTDAIMVGIGTLLADNPSLTTRLPEG-GKNPLRIVVDSKANTPLDSKVVAENPEK 240

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAAV 298
            +I VT+  D     A + K + +            L  L+  L    ++S+LVEGG+ +
Sbjct: 241 TLIFVTDLADQERISALQAKGVGVEVLPADPEGRVPLDLLMDNLGKHEISSVLVEGGSVL 300

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
            +S + S LVD +  + + ++ G    P+P+    +       +   +   ++ +D+ +
Sbjct: 301 NYSLLASGLVDKVYFFMAPLIFGGDTAPTPVGGTGVATVEEAWHVKDIEISHYDTDLLI 359


>gi|196037929|ref|ZP_03105239.1| riboflavin biosynthesis protein RibD [Bacillus cereus NVH0597-99]
 gi|196031199|gb|EDX69796.1| riboflavin biosynthesis protein RibD [Bacillus cereus NVH0597-99]
          Length = 367

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 119/355 (33%), Positives = 188/355 (52%), Gaps = 10/355 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M  AL  ++   G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+A
Sbjct: 5   ELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQA 64

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           RG T YVTLEPCSH+GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++
Sbjct: 65  RGGTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVL 124

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             + E + K     +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +
Sbjct: 125 VGVCEEKSKKMNEVFNKYIMTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHKI 184

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R ++ AILVG  TV  D+P LT R+      +P+R+ILD   ++ +++ ++        I
Sbjct: 185 RNENAAILVGANTVQKDNPSLTTRIP--NGRNPIRVILDSTLRIPMEANVVTDGEAPTWI 242

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
             T N             + +         +L ++L +L  +G++SLL+EGG  V  SFI
Sbjct: 243 FTTSNHAAEKRKVLESAGVKVFVTSGEKHINLYEMLDVLGRKGISSLLIEGGGEVNASFI 302

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
            + L+D +ILY +  +IG    PS +E   + K    +       D+    +GK+
Sbjct: 303 ENELMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDAIEFK----DISFTPVGKD 353


>gi|220931842|ref|YP_002508750.1| riboflavin biosynthesis protein RibD [Halothermothrix orenii H 168]
 gi|219993152|gb|ACL69755.1| riboflavin biosynthesis protein RibD [Halothermothrix orenii H 168]
          Length = 366

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 132/361 (36%), Positives = 198/361 (54%), Gaps = 13/361 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D  +M  AL  +R  VG TS NP V  ++V+D  ++G G   Y G PHAEV ALEEAG
Sbjct: 2   DKDIYYMEKALTLARKGVGYTSPNPMVGAVVVRDDKIVGEGHHRYYGGPHAEVYALEEAG 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E+A G+T YV LEPCSHYG++PPC   IIE G++RVV+ + DP+ RVSG+G++ L + GI
Sbjct: 62  EKAFGSTLYVNLEPCSHYGKTPPCVFKIIESGVKRVVISMVDPNPRVSGKGIEMLKKAGI 121

Query: 125 IVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V   +  E        ++     +   + LK+A + D  +  +   S  +TG  ++  V
Sbjct: 122 EVTVGVLEEKARNLNEVFIKNITNRMPFVYLKMAQTLDGYLATSSGDSRWVTGKKARQYV 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H LR + DAILVGIGTVL DDP LT RL+  +    ++I+LD   K+ L + I+     A
Sbjct: 182 HRLRHRVDAILVGIGTVLKDDPRLTTRLSDGKGKDSIKIVLDSKLKIPLTANILNQENDA 241

Query: 244 PVIIVTEN--DDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGA 296
           PVIIV  +  D        + K++ ++  D  +     +K+LL  L  +G++SLLVEGG 
Sbjct: 242 PVIIVCGHRVDSHKKKSLKQLKSVEVLSLDLNEYGQIPIKELLINLNKKGISSLLVEGGG 301

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVC 351
            V +SF+    VD ++ + +  ++G     S  +    E     K     + +  G D+ 
Sbjct: 302 RVNYSFLKEGFVDKMLFFIAPKLLGGSDGVSVFDGKGAEVMAKVKKLKKYKIEEIGEDIL 361

Query: 352 L 352
           +
Sbjct: 362 I 362


>gi|313889107|ref|ZP_07822763.1| riboflavin biosynthesis protein RibD [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312844847|gb|EFR32252.1| riboflavin biosynthesis protein RibD [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 371

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 134/360 (37%), Positives = 194/360 (53%), Gaps = 15/360 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D  +M  AL  +R   G T TNP V C+IVKD  +IG+G     G  HAEV A+ +A   
Sbjct: 8   DIFYMERALEIAREGTGKTKTNPLVGCVIVKDDKIIGQGAHLKFGENHAEVNAILDAKSR 67

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE+ RGAT YV LEPCSHYG++PPCA+ I++ GIRRVV+   DP  +VSGRG++ L   G
Sbjct: 68  GEDIRGATLYVNLEPCSHYGKTPPCAERIVKEGIRRVVIGTADPFEKVSGRGIKILEDAG 127

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I + + + E E       + T    KR  + LK  +S D  I      S  IT   S+  
Sbjct: 128 ISVTEGLCEEECLNLNERFFTYLKNKRPFVVLKSGMSLDGKIATESGESKWITSEFSRAH 187

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H LR Q DAI+VGIGTVLADDP L  R     +++P+RII D   ++ LD+K+++  L 
Sbjct: 188 GHELRGQLDAIMVGIGTVLADDPSLNTRHC-KYKNNPIRIITDSSLRIPLDAKVLRDDLD 246

Query: 243 APVIIVTEND-DPVLALAFRK-KNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
           +  II T    D       +  KN+ +I C  +    DLK L+  L    ++S+L+EGG 
Sbjct: 247 SIAIIATTESCDKDKLEKLKAMKNVEVIICKEKDKRVDLKDLMEKLKDYDISSILLEGGR 306

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
            +    + + LVD    + + I++G  GIP+     ++E         ++ +    D+ +
Sbjct: 307 TLNAEMLKNNLVDKFYFFIAPILLGSKGIPAIGDLEIDELKDAIRIKDMKCEKLFDDILV 366


>gi|228922109|ref|ZP_04085419.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837525|gb|EEM82856.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 360

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 122/352 (34%), Positives = 188/352 (53%), Gaps = 10/352 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  ++   G T+ NP V  +IV D  ++G G     G PHAE+ A+  A E+ARG 
Sbjct: 1   MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAEEQARGG 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPCSH+GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  +
Sbjct: 61  TIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            E E K     +    + KR  + +K  V+ D  I  +   S  IT   ++ +VH +R +
Sbjct: 121 CEEESKKMNEVFNKYILTKRPFVAIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNE 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           + AILVG  TV  D+P LT R+      +P+R+ILD   ++ +++K+I        I  T
Sbjct: 181 NAAILVGANTVQEDNPSLTTRIP--NGRNPIRVILDSTLRIPMEAKVITDGEAPTWIFTT 238

Query: 250 ENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
            N       A     + +         +L ++L +L  +GV+SLL+EGG  V  SFI ++
Sbjct: 239 SNHAAEKKKALENAGVKVFVTSGEKHINLYEMLDVLGEKGVSSLLIEGGGEVNASFIENK 298

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           L+D +ILY +  +IG    PS +E   + K    +       D+    +GK+
Sbjct: 299 LIDKLILYIAPKMIGGRMAPSFVEGAGITKMQDAIEFK----DISFTQVGKD 346


>gi|172038173|ref|YP_001804674.1| riboflavin biosynthesis protein [Cyanothece sp. ATCC 51142]
 gi|171699627|gb|ACB52608.1| riboflavin biosynthesis protein [Cyanothece sp. ATCC 51142]
          Length = 364

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 119/360 (33%), Positives = 185/360 (51%), Gaps = 10/360 (2%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M   + D + M   L  +R  +G TS NP V  +IVK+G +IG G     G PHAEV AL
Sbjct: 2   MTPDNVDQQMMQRCLTLARRGLGYTSPNPLVGAVIVKEGKIIGEGFHLKAGEPHAEVFAL 61

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAGE+A G T YV LEPC+HYGR+PPC + +I   + RVVV + DP+  VSG+G+  L 
Sbjct: 62  REAGEKAVGGTVYVNLEPCNHYGRTPPCTEALISAKVARVVVGMVDPNPLVSGKGIARLQ 121

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI +   + E+       A+  R +  +    LK A++ D  I  +   S  +TG  S
Sbjct: 122 EAGIEVTVGVEEAACLRLNEAFCHRILHNQPFGILKYAMTLDGKISSSTGHSAWVTGTKS 181

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  VH +RA  DA++VG  TV  D+P LT  ++     +P+R+++  +  L  D+ +   
Sbjct: 182 RQLVHEMRAGCDAVIVGGNTVRRDNPHLT--IHQATGRNPLRVVMSRNLHLPQDANLWNV 239

Query: 240 ALLAPVIIVTE-NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
            + AP I+ TE   +P L    R+K + +I        +++ +L  R ++S+L E G  +
Sbjct: 240 EI-APTIVFTEWGKNPSLQTQLRRKGVEVIELSPLIPSQVMDVLCERQLSSILWECGGVL 298

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
           A   I    +  I+ + +  +IG     SP+    LEK     +   V       D+ +E
Sbjct: 299 AAEAIAQGGIQKIMAFIAPKIIGGFSAASPVGNLGLEKMSDALSLQNVSLRQVDRDILVE 358


>gi|220909715|ref|YP_002485026.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7425]
 gi|219866326|gb|ACL46665.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7425]
          Length = 392

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 120/362 (33%), Positives = 183/362 (50%), Gaps = 9/362 (2%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D   M   L  +R   G T+ NP V C+IVKDG ++G G     G PHAEV AL  AG
Sbjct: 23  DLDQIMMQRCLTLARQAQGQTAPNPLVGCVIVKDGEIVGEGFHPKAGEPHAEVFALRAAG 82

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           + A GAT YV LEPC+HYGR+PPC++ +++ GI RVVV + DPD RVSG G+  L   GI
Sbjct: 83  DRAVGATLYVNLEPCNHYGRTPPCSEAVVKAGIGRVVVGMVDPDPRVSGGGIARLRAAGI 142

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   + E   +    A++ R    R    LK A++ D  I  A   S  IT   ++ +V
Sbjct: 143 EVTVGVEEMACRDLNEAFIHRITYHRPFGILKYAMTLDGKIATAKGHSAWITDAAARTEV 202

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H LRA  D ++VG  TV  D+P+LT  L+ ++  +P+RI++     L   + + +T   A
Sbjct: 203 HRLRAGCDGVIVGGNTVRRDNPQLT--LHEVEGRNPLRIVMSRSLDLPSQAHLWQTQAAA 260

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            +++        +  A + + + ++  D      ++  L  RG+ ++L E G  +A   I
Sbjct: 261 TLVLTQPGHSLQIKSALQAQGVEVVVLDVLTPATVMDYLYDRGLLAVLWECGGRLAARAI 320

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE-YIGK 357
               V  +  + +  +IG    PSP+ +  L           V+    GSD  +E Y+  
Sbjct: 321 AEGAVQKVWAFIAPKIIGGDQAPSPVGDLGLTTMTEALQLERVQWRTIGSDCLVEGYLPF 380

Query: 358 NL 359
           NL
Sbjct: 381 NL 382


>gi|258515514|ref|YP_003191736.1| riboflavin biosynthesis protein RibD [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257779219|gb|ACV63113.1| riboflavin biosynthesis protein RibD [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 367

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 132/367 (35%), Positives = 189/367 (51%), Gaps = 15/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D ++M  AL  +    G TS NP V  +IVK+G V+GRG     G PHAE+ AL+EAGE
Sbjct: 1   MDEQYMKMALDLAARARGRTSPNPMVGSVIVKNGAVVGRGYHKKAGTPHAEIHALKEAGE 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            ARGAT YVTLEPC H+GR+ PC + I+  GI+R VV + DP+  V+G+GL  L + G+ 
Sbjct: 61  AARGATIYVTLEPCCHHGRTGPCTEAILSAGIKRAVVAMTDPNPLVAGKGLDILRKAGVE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V  ++  E       ++         + LK A+S D  I      S  ITG  S+  VH
Sbjct: 121 VVSGLLAEEAAKLNEVFIKYVSTGMPFVLLKTAMSLDGKIAAYTGHSRWITGSASRAYVH 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL----NGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            LR   DAIL+GIGT++AD+P LT RL    +G++   P+R+I+D   +   ++K++   
Sbjct: 181 HLRDSYDAILIGIGTLMADNPSLTARLSCPEDGVKGKDPVRVIVDSLARTPPEAKVLTQI 240

Query: 241 LLAPVIIV-TENDDPVLALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGA 296
             AP II  T                 II        DL  L   L    +TS+L+EGGA
Sbjct: 241 SAAPTIIAITAAAPEERVQKLVAAGAQIIIAGNGPKIDLPYLFKSLTAIDITSILIEGGA 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVC 351
           AV  S +  +L D ++ + +  +IG    P P+    +           +    F  D+C
Sbjct: 301 AVNASVLEQKLADKLLWFIAPKIIGGKEAPGPVGGRGVAAVSEALLLERISVQRFEEDIC 360

Query: 352 LE-YIGK 357
           LE Y+ K
Sbjct: 361 LEGYLRK 367


>gi|268592074|ref|ZP_06126295.1| riboflavin biosynthesis protein RibD [Providencia rettgeri DSM
           1131]
 gi|291312469|gb|EFE52922.1| riboflavin biosynthesis protein RibD [Providencia rettgeri DSM
           1131]
          Length = 371

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 129/371 (34%), Positives = 188/371 (50%), Gaps = 19/371 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   D  +M+ A   +R     TS NP+V C+IV+DG ++G G     G PHAEV AL  
Sbjct: 1   MIEQDNMYMARAFELARKGRFTTSPNPNVGCVIVRDGTIVGEGYHQKAGEPHAEVHALRM 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG++A+GATAYVTLEPCSH+GR+PPCA+ +I+ G+ RVV  + DP+ +V+GRGL  LSQ 
Sbjct: 61  AGDKAQGATAYVTLEPCSHHGRTPPCAEALIKAGVSRVVAAMQDPNPQVAGRGLYMLSQA 120

Query: 123 GII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI     ++ ++ +     +L R      +I LK+A S D    +    S  IT   ++ 
Sbjct: 121 GIETRSNVLLNDAEAANRGFLKRMRTGFPYIQLKLAASLDGKTALESGESKWITSSAARK 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKL 230
            V  LRA++ AIL    TV+ADDP LT R N L           Q   P+RI+LD H ++
Sbjct: 181 DVQALRAEASAILSTSSTVVADDPSLTVRWNELPSDIQQVYPENQVRQPIRIVLDNHNRV 240

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD-CRDLKKLLTILVGRGVTS 289
           +   K+  T L     +V  N D       + + + +   +   DL  L+  L  R V S
Sbjct: 241 TSGHKV--TQLDGECWLVRSNPDENAVWQGQVEQLAVPADENGTDLVILMMQLAKRNVNS 298

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDY 345
           + VE GA +A S +   LVD +I+Y +  ++G          PL        F       
Sbjct: 299 IWVEAGAKLAGSLLKLGLVDELIVYIAPKLLGNSARGLVDFPPLNALIDAPKFEFTEVKQ 358

Query: 346 FGSDVCLEYIG 356
            G D+ +    
Sbjct: 359 VGPDLRVRLRP 369


>gi|52080843|ref|YP_079634.1| riboflavin-specific deaminase [Bacillus licheniformis ATCC 14580]
 gi|52786214|ref|YP_092043.1| hypothetical protein BLi02475 [Bacillus licheniformis ATCC 14580]
 gi|52004054|gb|AAU23996.1| riboflavin-specific deaminase [Bacillus licheniformis ATCC 14580]
 gi|52348716|gb|AAU41350.1| RibD [Bacillus licheniformis ATCC 14580]
          Length = 362

 Score =  365 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 129/354 (36%), Positives = 179/354 (50%), Gaps = 9/354 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DA +M+ AL  +R   G T  NP V  ++VKDG V+G G     G  HAEV A++ AG  
Sbjct: 3   DAHYMNLALELARQGEGQTGANPLVGAVVVKDGEVVGMGAHLKYGEAHAEVHAIQMAGRH 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GA  YVTLEPCSHYG++PPCA+ II  G++RVVV  +DP+  VSGRG++ L   GI +
Sbjct: 63  AEGAVIYVTLEPCSHYGKTPPCAELIIRSGLKRVVVAAEDPNPLVSGRGIEMLRSAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +++ + +     ++        ++TLK A S D     A   S  IT   ++   H 
Sbjct: 123 ETGVLKEQAEELNEKFMHFMRTGLPYVTLKAAASLDGKTATATGDSKWITSEEARMDAHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R     ILVG GT+ ADDP LTCRL G   + P+R++LD    + L SK+I+       
Sbjct: 183 YRKNHQCILVGSGTIKADDPSLTCRLPGA-VNQPVRVVLDTTLSIPLQSKVIQDKEAPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           I  T   DP       K+ + +   D  +L  + +L  L  RG+ S+ VEGGA V  SF+
Sbjct: 242 IYTTSKADPEKVRNVEKEGVQVTVLDADELQVRDVLLHLADRGIASVFVEGGATVHASFV 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCL 352
              L   II Y +  +IG    PS L     +                G D+ L
Sbjct: 302 KEGLYQQIIFYLAPKLIGGLQSPSILSGEGFQSMKDVPLLQFTTITKIGQDIKL 355


>gi|168486049|ref|ZP_02710557.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           CDC1087-00]
 gi|183570882|gb|EDT91410.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           CDC1087-00]
          Length = 366

 Score =  365 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 118/367 (32%), Positives = 188/367 (51%), Gaps = 13/367 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G PHAE  AL+   E 
Sbjct: 3   DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + +
Sbjct: 63  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A+S D  I      S  IT   ++  VH 
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356
            +  ++VD + +Y +  + G      P+    +      +R         G+D  +E   
Sbjct: 301 ALEQQIVDELKIYIAPKIFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359

Query: 357 KNLCLQE 363
              CLQE
Sbjct: 360 IYPCLQE 366


>gi|291541288|emb|CBL14399.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Roseburia intestinalis XB6B4]
          Length = 396

 Score =  365 bits (937), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 118/358 (32%), Positives = 184/358 (51%), Gaps = 15/358 (4%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
            R+M  A+  +    G T TNP V  ++VK+  +IG G     G  HAE +AL +    G
Sbjct: 34  ERYMRRAMELAELGRGWTKTNPVVGAVLVKEDRIIGEGYHKKFGGLHAEREALADCRSRG 93

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E+  GA  YVTLEPC HYG++PPC Q +IE GI  V V   D +  V+G G++ L ++GI
Sbjct: 94  EDPAGADLYVTLEPCCHYGKTPPCTQAVIEAGISHVFVGAKDINPLVAGGGIRQLREQGI 153

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            + + +++ E +     +      K  ++ +K A++ D  I  A   S  ITG  ++ QV
Sbjct: 154 LVTEGVLQEECEYQNRVFFHYIQTKLPYVRMKYAMTLDGKIASASGKSKWITGEAAREQV 213

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H +R +   I+VG GTV+ADDP L CRL   Q   P+RI+ D   ++ L S+I++TA   
Sbjct: 214 HRMRHEMTGIMVGAGTVIADDPMLNCRLP--QTKDPVRIVCDTTLRIPLKSRIVQTAEEQ 271

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVA 299
             II T   D      ++K    II  +      DLK+L+  L   G+ S+L+EGGA + 
Sbjct: 272 KTIIATCCQDEARIREYQKYACRIIVTEQADGKVDLKELMRQLGADGIESVLLEGGAMLN 331

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCL 352
            S + + +V+ +  Y +  + G     SP+    ++        +  R    G D+ +
Sbjct: 332 WSALEAGIVNEVYAYVAPKLFGGADAKSPVAGMGVDHPDDAYCMVSQRVQQVGEDILI 389


>gi|77919046|ref|YP_356861.1| riboflavin biosynthesis protein RibD [Pelobacter carbinolicus DSM
           2380]
 gi|77545129|gb|ABA88691.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Pelobacter carbinolicus DSM 2380]
          Length = 371

 Score =  365 bits (937), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 128/357 (35%), Positives = 188/357 (52%), Gaps = 11/357 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             FM  A+  +R   G T  NP+V  LIVKDG ++GRG     G PHAE+ AL EAG+ A
Sbjct: 6   ENFMRQAIDLARRGEGRTRPNPAVGALIVKDGEIVGRGFHPKAGQPHAEIYALREAGDRA 65

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           RGA  YVTLEPCSH+GR+ PCA  IIE G+ RV V   DP+ +V+G G++ L   GI V 
Sbjct: 66  RGADMYVTLEPCSHHGRTGPCADAIIEAGLARVYVGTLDPNPQVAGGGIRKLQGAGIEVH 125

Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++E+  +  +  +    +  +  + LK A++ D     A   S  +T   S+++VH L
Sbjct: 126 CGVLENLCRRIIAPFAKHILTAKPFVVLKSAMTLDGKTATASGHSQWVTSAASRHEVHKL 185

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK-TALLAPV 245
           R + D I+VGIGTVL DDP+LT RL       P RI+LD   ++  D+ I+   +  A +
Sbjct: 186 RDRMDGIMVGIGTVLQDDPQLTTRLPDEGGRDPERIVLDSSLRIPEDAAILNLQSSAATL 245

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           I  T         A R     ++         DL  L+T L  RG+ S+L+EGGA +  +
Sbjct: 246 IATTARASKAKIEAIRAAGAEVLVLPESGGRVDLHALMTALGARGLQSILLEGGAELNGA 305

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE 353
           F  + LVD ++++ +  ++G  G     +   +           VR  +FG D  +E
Sbjct: 306 FWRAGLVDRVMMFIAPKIVGGDGGKGVFKGPGVLTMTEATVLEDVRVTHFGDDTLIE 362


>gi|319645199|ref|ZP_07999432.1| RibD protein [Bacillus sp. BT1B_CT2]
 gi|317393008|gb|EFV73802.1| RibD protein [Bacillus sp. BT1B_CT2]
          Length = 362

 Score =  365 bits (937), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 129/354 (36%), Positives = 179/354 (50%), Gaps = 9/354 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DA +M+ AL  +R   G T  NP V  ++VKDG V+G G     G  HAEV A++ AG  
Sbjct: 3   DAHYMNLALELARQGEGQTGANPLVGAVVVKDGEVVGMGAHLKYGEAHAEVHAIQMAGRH 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GA  YVTLEPCSHYG++PPCA+ II  G++RVVV  +DP+  VSGRG++ L   GI +
Sbjct: 63  AEGAVIYVTLEPCSHYGKTPPCAELIIRSGLKRVVVAAEDPNPLVSGRGIEMLRSAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +++ + +     ++        ++TLK A S D     A   S  IT   ++   H 
Sbjct: 123 ETGVLKEQAEELNEKFMHFMRTGLPYVTLKAAASLDGKTATATGDSKWITSEEARMDAHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R     ILVG GT+ ADDP LTCRL G   + P+R++LD    + L SK+I+       
Sbjct: 183 YRKNHQCILVGSGTIKADDPSLTCRLPGA-VNQPVRVVLDTTLSIPLQSKVIQDKEAPTW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           I  T   DP       K+ + +   D  +L  + +L  L  RG+ S+ VEGGA V  SF+
Sbjct: 242 IYTTSKADPEKVRNVEKEGVQVTVLDADELQVRDVLLHLADRGIASVFVEGGATVHASFV 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCL 352
              L   II Y +  +IG    PS L     +                G D+ L
Sbjct: 302 KEGLYQQIIFYLAPKLIGGLQSPSILSGEGFQSMKDVPLLQFTTITKVGQDIKL 355


>gi|317470714|ref|ZP_07930099.1| riboflavin biosynthesis protein RibD [Anaerostipes sp. 3_2_56FAA]
 gi|316901849|gb|EFV23778.1| riboflavin biosynthesis protein RibD [Anaerostipes sp. 3_2_56FAA]
          Length = 359

 Score =  365 bits (937), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 117/357 (32%), Positives = 185/357 (51%), Gaps = 13/357 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            ++M  A+  ++   G T+ NP V  +IVKDG VIG G     G  HAE  AL+   ++ 
Sbjct: 3   EQYMRRAIELAKKGTGYTNPNPLVGAVIVKDGEVIGEGFHEAYGGLHAERNALKSCTKDP 62

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII-V 126
            GA  YVTLEPC HYGR+PPC + +I+ GIR+V V   DP+ +V+G G++ L + GI   
Sbjct: 63  NGAELYVTLEPCCHYGRTPPCTEAVIKSGIRKVYVGNVDPNPKVAGMGIKILREHGIEAE 122

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +++ E +     +         ++ LK A++ D  I +    S  ITG  ++  V  L
Sbjct: 123 TGILDEECRGLNDIFFYYITHDTPYVVLKYAMTLDGKIAVRTGESKWITGGEAREHVQFL 182

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R +  AIL GI TV++DDP L  R+ G   ++P+R+I D   ++ + SKI+++A + P I
Sbjct: 183 RHRYAAILTGIHTVISDDPMLNARIEG--GNNPVRVICDSRLRIPISSKIVQSAKVIPTI 240

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           I     +   A         ++ C  +    DL +L+ IL    + S+LVEGGA +  S 
Sbjct: 241 IAACERN-EKAQRLEALGCRVLICPGKDGKTDLLELMRILRKEKIDSVLVEGGADINDSV 299

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVCLEY 354
           I +  V+ +  + +  + G     SP+E   ++K    +         FG D+ LEY
Sbjct: 300 IQAGAVNKVYAFIAPKIFGGRQARSPVEGEGVDKISDALLLNGPEITRFGEDLLLEY 356


>gi|320656030|gb|EFX23946.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320665156|gb|EFX32249.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli O157:H7 str. LSU-61]
          Length = 361

 Score =  365 bits (937), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 126/362 (34%), Positives = 182/362 (50%), Gaps = 18/362 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+A+GA
Sbjct: 1   MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI +   +
Sbjct: 61  TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V  LRAQ
Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKIIK 238
           S AIL    TVLADDP LT R + L               P+RI++D   +++ +  I++
Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDVQTQALYPQHHLRQPVRIVIDSQNRVTPEHHIVQ 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
                        +D        +  +   +    DL  L+  L  + + S+ VE G  +
Sbjct: 241 QPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTL 298

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           A + + + LVD +I+Y +  ++G           LE+      F      + G DVCL  
Sbjct: 299 AGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHL 358

Query: 355 IG 356
           +G
Sbjct: 359 VG 360


>gi|149011050|ref|ZP_01832355.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
           SP19-BS75]
 gi|149017852|ref|ZP_01834311.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
           SP23-BS72]
 gi|168492136|ref|ZP_02716279.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           CDC0288-04]
 gi|225853791|ref|YP_002735303.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae JJA]
 gi|237649748|ref|ZP_04524000.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CCRI
           1974]
 gi|237821446|ref|ZP_04597291.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CCRI
           1974M2]
 gi|147764686|gb|EDK71616.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
           SP19-BS75]
 gi|147931416|gb|EDK82394.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
           SP23-BS72]
 gi|183573645|gb|EDT94173.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           CDC0288-04]
 gi|225723048|gb|ACO18901.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae JJA]
 gi|301793457|emb|CBW35830.1| riboflavin biosynthesis protein [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           and 5-amino-6-(5-phosphoribosylamino)uracil reductase]
           [Streptococcus pneumoniae INV104]
 gi|332077484|gb|EGI87945.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           GA41301]
 gi|332204191|gb|EGJ18256.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           GA47901]
          Length = 366

 Score =  364 bits (936), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 117/367 (31%), Positives = 187/367 (50%), Gaps = 13/367 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G PHAE  AL+   E 
Sbjct: 3   DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + +
Sbjct: 63  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A+S D  I      S  IT   ++  VH 
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356
            +  ++VD + +Y +  + G      P+    +      +R         G+D  +E   
Sbjct: 301 ALEQQIVDELKIYIAPKIFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359

Query: 357 KNLCLQE 363
              C QE
Sbjct: 360 IYPCSQE 366


>gi|15902208|ref|NP_357758.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae R6]
 gi|116515773|ref|YP_815688.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae D39]
 gi|148996604|ref|ZP_01824322.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
           SP11-BS70]
 gi|168576390|ref|ZP_02722273.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           MLV-016]
 gi|182683162|ref|YP_001834909.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           CGSP14]
 gi|303255119|ref|ZP_07341195.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           BS455]
 gi|307066860|ref|YP_003875826.1| pyrimidine reductase, riboflavin biosynthesis [Streptococcus
           pneumoniae AP200]
 gi|15457706|gb|AAK98968.1| Riboflavin biosynthese; a deaminase [Streptococcus pneumoniae R6]
 gi|116076349|gb|ABJ54069.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae D39]
 gi|147757179|gb|EDK64218.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
           SP11-BS70]
 gi|182628496|gb|ACB89444.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           CGSP14]
 gi|183577789|gb|EDT98317.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           MLV-016]
 gi|301801129|emb|CBW33802.1| riboflavin biosynthesis protein [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           and 5-amino-6-(5-phosphoribosylamino)uracil reductase]
           [Streptococcus pneumoniae INV200]
 gi|302597949|gb|EFL65019.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           BS455]
 gi|306408397|gb|ADM83824.1| Pyrimidine reductase, riboflavin biosynthesis [Streptococcus
           pneumoniae AP200]
          Length = 366

 Score =  364 bits (936), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 117/367 (31%), Positives = 187/367 (50%), Gaps = 13/367 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G PHAE  AL+   E 
Sbjct: 3   DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + +
Sbjct: 63  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A+S D  I      S  IT   ++  VH 
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 183 LRHYVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356
            +  ++VD + +Y +  + G      P+    +      +R         G+D  +E   
Sbjct: 301 ALEQQIVDELKIYIAPKIFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359

Query: 357 KNLCLQE 363
              C QE
Sbjct: 360 IYPCSQE 366


>gi|110804436|ref|YP_687956.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Shigella flexneri 5 str. 8401]
 gi|110613984|gb|ABF02651.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Shigella
           flexneri 5 str. 8401]
 gi|332760694|gb|EGJ90982.1| riboflavin biosynthesis protein RibD [Shigella flexneri 4343-70]
 gi|333008609|gb|EGK28077.1| riboflavin biosynthesis protein RibD [Shigella flexneri VA-6]
          Length = 361

 Score =  364 bits (936), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 126/362 (34%), Positives = 182/362 (50%), Gaps = 18/362 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+A+GA
Sbjct: 1   MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI +   +
Sbjct: 61  TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V   RAQ
Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQRAQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKIIK 238
           S AIL    TVLADDP LT R + L E             P+RI++D   +++ + +I++
Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHRIVQ 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
                        +D        +  +   +    DL  L+  L  + + S+ VE G  +
Sbjct: 241 QPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTL 298

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           A   + + LVD +I+Y +  ++G           LE+      F      + G DVCL  
Sbjct: 299 AGVLLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPDVCLHL 358

Query: 355 IG 356
           +G
Sbjct: 359 VG 360


>gi|308070849|ref|YP_003872454.1| riboflavin biosynthesis protein ribD [Paenibacillus polymyxa E681]
 gi|305860128|gb|ADM71916.1| Riboflavin biosynthesis protein ribD [Paenibacillus polymyxa E681]
          Length = 366

 Score =  364 bits (936), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 126/362 (34%), Positives = 186/362 (51%), Gaps = 12/362 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            ++M  AL  +R   G T  NP V  +IV +G ++G G     G PHAE+ AL  AGE A
Sbjct: 5   EKYMRLALENARSAKGQTEPNPLVGSVIVNNGRIVGIGAHLKPGEPHAEIHALRMAGEHA 64

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           +GAT YVTLEPCSH+GR+ PCA+ I++ GIRRVV+   DP+  VSGRG+Q L   GI ++
Sbjct: 65  QGATIYVTLEPCSHHGRTGPCAEAIVKAGIRRVVIAALDPNPLVSGRGVQILKDAGIEVI 124

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             + E E       +    V KR  IT+K AV+ D  I      S  IT   ++  VH L
Sbjct: 125 VGVCEQESIRMNEVFNQYIVSKRPFITIKSAVTLDGKIATRTSESKWITSEAAREDVHRL 184

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R +   ILVG+ TV+ D+P+LT RL   +  +P+RIILD   ++ LD+++I        I
Sbjct: 185 RNEHVGILVGVQTVIHDNPQLTTRLP--EGRNPIRIILDSKLRIPLDARVITDGEAPTWI 242

Query: 247 IVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
                 D        +  + +        +  +L ++L IL    V+S+ VEGGA V  S
Sbjct: 243 FTGRVYDEGKRSQLEQLGVKVYTTQDENSERVNLPQMLDILGAAEVSSVFVEGGAEVNAS 302

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           F+   L D ++LY +  ++G    P  L    +      V       D+ +  +G +  +
Sbjct: 303 FVQQGLADRLVLYIAPKLVGGRAAPGFLGGEGVSAMSDAVALH----DLSVTPVGVDWKI 358

Query: 362 QE 363
           + 
Sbjct: 359 EG 360


>gi|295093779|emb|CBK82870.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Coprococcus sp. ART55/1]
          Length = 382

 Score =  364 bits (936), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 186/371 (50%), Gaps = 21/371 (5%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
            FD  +M  A+  +R   G  + NP V  +IVKDG +IG G     G  HAE  A     
Sbjct: 9   EFDPSYMRRAIELARRGTGAVNPNPLVGAVIVKDGRIIGEGYHVRYGELHAERAAFASLK 68

Query: 65  E--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           +  +A GA  YVTLEPC H+G+ PPC   IIE  IR+V    DDP+  V+G+G + L   
Sbjct: 69  DQADAEGAVMYVTLEPCCHFGKQPPCVDAIIEHKIRKVYCGSDDPNAMVAGKGFKRLRDA 128

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +    +++E       +    V K+ ++T+K A++ D  I      S  ITG  S+ 
Sbjct: 129 GIEVYTHCLKAECDAINGIFFKYIVNKQPYVTMKYAMTMDGRIATHTGASKWITGEASRA 188

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE------HSPMRIILDPHFKLSLDSK 235
            V  LR +   I+ GIGTVLADDP LTCR+    +       +P+RI+ D   ++  DS+
Sbjct: 189 YVMELRNRHKGIMAGIGTVLADDPMLTCRIEKSTDRDTDNVRNPIRIVCDSKLRIPEDSQ 248

Query: 236 IIKTALLAPVIIVTEND---DPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVT 288
           I++TA     I+ T      D       + K ++II  +      DL++L+TIL G+G+ 
Sbjct: 249 IVQTAGEIETIVATTAAGASDSAKCERLKDKGVSIIETEDVDGQVDLRQLMTILGGKGID 308

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRR 343
            +L+EGG  + +S ++  LVD   ++ +  + G  G  SP+    ++       F     
Sbjct: 309 GILLEGGGELNYSMVSEGLVDEACVFIAPKIFGGEGKYSPVSGTGVDVPADAHMFGLDEV 368

Query: 344 DYFGSDVCLEY 354
             F  DV L Y
Sbjct: 369 RRFDEDVMLRY 379


>gi|218246081|ref|YP_002371452.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 8801]
 gi|218166559|gb|ACK65296.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 8801]
          Length = 360

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 113/359 (31%), Positives = 187/359 (52%), Gaps = 8/359 (2%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M    FD + M   L+ +R  +G TS NP V  +IV++G ++G G     G PHAE+ AL
Sbjct: 1   MNSPDFDQQMMQRCLQLARQALGQTSPNPLVGSVIVQNGEIVGEGFHPKAGEPHAEIFAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +A E A+GAT YV+LEPC+HYGR+PPC   +I  G+ +VVV + DP+  VSG+G++ L 
Sbjct: 61  RQAQERAKGATVYVSLEPCNHYGRTPPCTDALIAAGVSKVVVGMVDPNPLVSGKGVEKLQ 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI +V  + ES  +    A++ R +  +    LK A++ D  I      S  ITG  S
Sbjct: 121 ESGIEVVVGVEESACRQLNEAFIHRILHHQPLGILKYAMTLDGKIAATTGHSAWITGTAS 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  VH +RA  DA++VG  T+  D+P LT     +   +P+R+++     L  ++ + +T
Sbjct: 181 RQLVHQVRAACDAVIVGGNTLRKDNPNLTTH--EVAGVNPLRVVMSKTLDLPSEANLWQT 238

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
            + + ++I     +  L    R + + +I         ++ +L  RG++S+L E G  +A
Sbjct: 239 DIASTLVITERTRNSKLQAQLRNRGVEVIELASVTPSGVMQLLYERGLSSVLWECGGTLA 298

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
              I   ++  I+ + +  +IG    P P+ +  LEK         V       D+ +E
Sbjct: 299 AQAIADGVIQKIMAFIAPKIIGGTIAPCPIGDLGLEKMTQALALQRVTLQQIDGDILIE 357


>gi|153954787|ref|YP_001395552.1| hypothetical protein CKL_2169 [Clostridium kluyveri DSM 555]
 gi|219855247|ref|YP_002472369.1| hypothetical protein CKR_1904 [Clostridium kluyveri NBRC 12016]
 gi|146347645|gb|EDK34181.1| RibD [Clostridium kluyveri DSM 555]
 gi|219568971|dbj|BAH06955.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 369

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 131/365 (35%), Positives = 198/365 (54%), Gaps = 13/365 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M   + D  +M  AL  +    G  + NP V  L+VK+G ++GRG   + G PHAEV AL
Sbjct: 1   MNYDNKDEHYMEIALELASKGEGFVNPNPQVGALVVKEGNIVGRGYHKFYGGPHAEVYAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           +EAG++A G   YVTLEPCSHYG++PPC + I+  GI++VVV + DP+  VSGRG+++L 
Sbjct: 61  KEAGDKAAGGQIYVTLEPCSHYGKTPPCVEAIVRAGIKKVVVALKDPNPLVSGRGIEFLR 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
            KGI +V  ++E E       ++    +K   + LK AV+ D  I      S  IT   S
Sbjct: 121 NKGIEVVTGVLEKEALNINEIFIKYISDKLPFVILKSAVTLDGKIATVTGQSKWITCEES 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +N VH +R +  AI VGIGT+L+D+P LT RL   +  SP+ ++LD   ++ LD KI  T
Sbjct: 181 RNFVHHIRNRVMAIAVGIGTILSDNPLLTTRL-EKKCKSPIAVVLDSKLRIPLDCKIFDT 239

Query: 240 ALLAPVII-VTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVE 293
                +II  TE  D        K  +++I C        +LK L+  L   G+ SL +E
Sbjct: 240 LKYRKIIIACTEGYDEDKKYEIEKMGVDVIICPKDESGHVNLKILIEKLGNIGIDSLFIE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-----GS 348
           GG ++  S ++S +VD +I + +  +IG     + +E   +E     V+         G 
Sbjct: 300 GGGSLNFSALSSGIVDKVIYFIAPKIIGGLEAKTSVEGKGIEDLNKAVKLKNISYLKSGE 359

Query: 349 DVCLE 353
           D+ ++
Sbjct: 360 DMMIQ 364


>gi|320016370|gb|ADV99941.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 369

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 128/367 (34%), Positives = 182/367 (49%), Gaps = 18/367 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A    R     TS NP+V C++V+DG ++G G     G PHAEV AL  AGE+
Sbjct: 4   DEFYMARAFELVRLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSHYGR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q GI +
Sbjct: 64  ARGATAYVTLEPCSHYGRTPPCADALVAAGVIRVVAAMQDPNPEVAGRGLYKLKQAGIAV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
            RA+S AIL    TVLADDP LT R   L               P++IILD H +++   
Sbjct: 184 FRAESSAILSTSATVLADDPSLTVRWQDLDAETQVLYPHDSVRQPVKIILDSHNRVTPRH 243

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           K+I+     P  +   + D        ++ +   Y +  DL  L+  L  R + S+ VE 
Sbjct: 244 KVIQQD--GPCWLARVDADDQPWPGNIEQLLLPRYGNGVDLVVLMMQLGKRNINSVWVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           G  +A + + + +VD +ILY +  ++G         + L        F        G D+
Sbjct: 302 GPQLAGALLQAGVVDELILYIAPKLLGSDARGLCELAGLTNLSQAPEFAFSDVRLVGPDL 361

Query: 351 CLEYIGK 357
            L    K
Sbjct: 362 RLRLKPK 368


>gi|158336980|ref|YP_001518155.1| riboflavin biosynthesis protein RibD [Acaryochloris marina
           MBIC11017]
 gi|158307221|gb|ABW28838.1| riboflavin biosynthesis protein RibD [Acaryochloris marina
           MBIC11017]
          Length = 387

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 107/366 (29%), Positives = 188/366 (51%), Gaps = 10/366 (2%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
            +     + M   L+ ++   G T+ NP V C+I +DG ++G G     G PHAEV AL 
Sbjct: 18  NIDPHHQQMMQRCLQLAQKAAGFTTPNPLVGCVIERDGEIVGEGYHPKAGEPHAEVFALR 77

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG++A+GATAYV+LEPC+H+GR+PPC++ +++ G+  VVV + DPD RVSG+G++ L  
Sbjct: 78  AAGDKAKGATAYVSLEPCNHFGRTPPCSEALVKAGVATVVVGMVDPDPRVSGKGIERLRA 137

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI ++  + E++ +    A++ R + +R    LK A++ D  I      S  IT  +++
Sbjct: 138 AGIQVITGVEEADCQRVNEAFVHRILYQRPFGILKYAMTLDGKIATTAGHSAWITKEVAR 197

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRL---NGLQEHSPMRIILDPHFKLSLDSKII 237
             VH LRA  DA++VG  TV  D+P LT           ++P+R++L     L   + + 
Sbjct: 198 AHVHRLRATCDAVIVGGNTVRRDNPHLTTHHKADANQPPNNPLRVVLSRTLDLPPTAHLW 257

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
           +T +   +++   + +        ++ + ++  D      ++  L  + + S+L E G  
Sbjct: 258 ETDIAPTIVLTQGHPNGEGQAYLEQQGVEVVNLDELTPATVMAYLGKKELLSVLWECGGT 317

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
           ++   I    V  ++ + +  ++G    PSP+ +    K         VR    G D  +
Sbjct: 318 LSARAIADGSVQKVLAFIAPKIVGGQNAPSPVGDLGFNKMTEALQLERVRWHIVGEDCLV 377

Query: 353 E-YIGK 357
           E Y+ K
Sbjct: 378 EGYLPK 383


>gi|113475344|ref|YP_721405.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Trichodesmium erythraeum IMS101]
 gi|110166392|gb|ABG50932.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Trichodesmium erythraeum IMS101]
          Length = 374

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 112/363 (30%), Positives = 186/363 (51%), Gaps = 7/363 (1%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             +  D   M+  L  +R  +G T+ NP V C+I+K+G +IG G     G PHAEV AL 
Sbjct: 9   NQNQLDPLIMAHCLELARRALGNTAPNPLVGCVIIKNGQIIGEGFHPGAGYPHAEVFALT 68

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           EAGE+ARGATAYV LEPC+HYGR+PPC   +I  G+ RVV+ + DP+  V+G G+  L  
Sbjct: 69  EAGEKARGATAYVNLEPCNHYGRTPPCTDALIAAGVARVVIGMIDPNPLVAGAGVAKLQD 128

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +V  ++E+E +    A++ R +       LK A++ D  I      S  +T   ++
Sbjct: 129 AGIEVVVGVLEAECRELNEAFIHRMLYHCPFGILKYAMTLDGKIATTTGHSAWVTSQEAR 188

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
           ++VH LRA SDA+++G  TV  D+P LT R    Q ++P+R+++     L  ++ +   +
Sbjct: 189 SEVHKLRAISDAVIIGGNTVRRDNPFLTSR--STQANNPLRVVMSRSLDLPTEANLWDVS 246

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
               ++    + +       R+K + ++         +++ L  RG  S+L E G  +A 
Sbjct: 247 EAQTLVFTEIDSNQEFKEYLRQKGVEVLETSTLTPAVVMSNLYDRGFLSVLWECGGTLAA 306

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
             +    V  I  + +  +IG    P+P+    L K       +    ++ +  +G +  
Sbjct: 307 RAMADGAVQKIWAFIAPKIIGGEIAPTPVGNLGLTKMTEAFELE----NISMRTVGCDYL 362

Query: 361 LQE 363
           L+ 
Sbjct: 363 LEG 365


>gi|283784233|ref|YP_003364098.1| riboflavin biosynthesis protein [Citrobacter rodentium ICC168]
 gi|282947687|emb|CBG87242.1| riboflavin biosynthesis protein [Citrobacter rodentium ICC168]
          Length = 367

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 134/368 (36%), Positives = 191/368 (51%), Gaps = 20/368 (5%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ +      T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDELYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGYHYRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGMARVVAAMQDPNPQVAGRGLYRLQQAGIE 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP+LT R + L E             P+RI++D   +++ +
Sbjct: 182 RLRAQSHAILTSSETVLADDPQLTVRWSELGEATQAAYPQENLRQPVRIVIDSRNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292
            +I+           T+ DD V   + R   I +   +   DL  LL +L  + + SL V
Sbjct: 242 HRIVSQPGE-TWFARTKEDDRVWPESVR--TIQVPEHNGHLDLVLLLMLLGKQQINSLWV 298

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGS 348
           E G  +A + + + +VD +I+Y +  ++G       +   LE+      F      Y G 
Sbjct: 299 EAGPTLAGALLQAGVVDELIMYVAPKLLGSDARGLCVLPGLEKLADAPQFQFKEIRYTGP 358

Query: 349 DVCLEYIG 356
           DVCL  I 
Sbjct: 359 DVCLHLIP 366


>gi|182417348|ref|ZP_02948682.1| riboflavin biosynthesis protein RibD [Clostridium butyricum 5521]
 gi|237668576|ref|ZP_04528560.1| riboflavin biosynthesis protein RibD [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182378778|gb|EDT76300.1| riboflavin biosynthesis protein RibD [Clostridium butyricum 5521]
 gi|237656924|gb|EEP54480.1| riboflavin biosynthesis protein RibD [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 360

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 111/358 (31%), Positives = 180/358 (50%), Gaps = 11/358 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M  AL  +   VG+ + NP V  +IVKD  VIG G     G  HAE  A++ A E
Sbjct: 1   MDEFYMKRALELAIKGVGMVNPNPMVGAVIVKDNKVIGEGFHEKYGHAHAERNAVKNAVE 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +  GAT YVTLEPC+HYG++PPC   +IE  +R+VV+ + DP+  V+G+ ++ L +  I 
Sbjct: 61  DIEGATVYVTLEPCAHYGKTPPCVDLLIEKKVRKVVIGMLDPNPLVAGKSIKKLKENNIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   + E E +     ++     K+  + +K  +S D  I  +G  S  IT   S+   H
Sbjct: 121 VKVGVKEKECRKLNEVFIKYITTKKPFVIMKAGISIDGKIATSGGESKWITSERSRLHSH 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR +   I+VGI TVL+DDP LT R    +   P+RII+D   K+  +SK+IK      
Sbjct: 181 ELRNRMSGIMVGINTVLSDDPSLTYR-GEHKGKDPLRIIIDSTLKVPFESKVIKYNNNNT 239

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300
           ++   EN D +      K  + +I    +    DL++++  L    + S+L+EGG  +  
Sbjct: 240 IVACVENADLIKKEKLEKMGVKVIETKSKKGKVDLQEVVERLGKDKIDSILLEGGGTLNF 299

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
           S +   +VD +  Y +  +IG     + +            N   +  +  G+++ +E
Sbjct: 300 SALKEGIVDKVRFYIAPKIIGGQNSKNSVSGQGFYNLDDCVNLKDMSYEQMGNEIVVE 357


>gi|308272935|emb|CBX29539.1| Riboflavin biosynthesis protein ribD [uncultured Desulfobacterium
           sp.]
          Length = 380

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 126/362 (34%), Positives = 189/362 (52%), Gaps = 14/362 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M  A+  +    G TS NP V  ++VKDG V G+G     G  HAEV A+++A +
Sbjct: 16  DDLFYMKMAIDLAEKGRGFTSPNPMVGAVVVKDGKVAGKGYHEAYGKAHAEVNAIDDAKK 75

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           ++ GAT YVTLEPC+H+G++PPC + IIE GI+RVV  + DP+  V G G ++L   GI 
Sbjct: 76  DSFGATLYVTLEPCNHFGKTPPCTKKIIESGIKRVVAAIRDPNPDVKGNGSEYLKNNGID 135

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           ++  +   E +     ++     KR  + +K A + D  I      S  +TG  S+  VH
Sbjct: 136 VIFGVCGKEAEKQNEIFIKYTKTKRPFVMVKCASTLDGNIATKTGDSKWVTGEESRQFVH 195

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR  SDAI+VGI TV  D+PELT R++G+   SP+R+ILD    +S D+ ++     + 
Sbjct: 196 RLRHYSDAIMVGIDTVKRDNPELTTRIDGMNGLSPVRVILDSRLSISEDALVLNKNSDSD 255

Query: 245 VIIVTENDDPVLAL-----AFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295
            I+V  N  P  A+        +K I II         +L  L+  L   G+TSLL+EGG
Sbjct: 256 TIMVMSNHAPDKAVLQKKNRLEEKGIKIIESPAENNLINLDILMDTLGLMGITSLLIEGG 315

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVC 351
           + V  S  + ++VD I  + +  ++G  G+      G            V    FG D+ 
Sbjct: 316 SRVIASAFSQKIVDKIFFFYAPKILGGDGVSICRGPGPALMRDCLPVKEVGIQKFGDDIL 375

Query: 352 LE 353
           +E
Sbjct: 376 IE 377


>gi|229103925|ref|ZP_04234603.1| Riboflavin biosynthesis protein [Bacillus cereus Rock3-28]
 gi|228679493|gb|EEL33692.1| Riboflavin biosynthesis protein [Bacillus cereus Rock3-28]
          Length = 360

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 122/352 (34%), Positives = 186/352 (52%), Gaps = 10/352 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  +    G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARG 
Sbjct: 1   MKLALENANAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARGG 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPCSH+GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  +
Sbjct: 61  TIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKVLQDAGIEVLVGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            E E K     +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R +
Sbjct: 121 CEEESKKMNEVFNKYIMTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNE 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           + AILVG  TV  D+P LT R+      +P+R+ILD   ++ + + ++        I  T
Sbjct: 181 NAAILVGANTVQKDNPSLTTRIP--NGRNPIRVILDSTLRIPMKANVVTDEEAPTWIFTT 238

Query: 250 ENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
            N       A     + +         +L ++L +L  +GV+SLL+EGG  V  SFI + 
Sbjct: 239 SNHAEEKKKALENAGVKVFVTSGEKHINLYEMLDVLGQKGVSSLLIEGGGEVNASFIENE 298

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           L+D +ILY +  +IG    PS +E   + K    +       D+    +GK+
Sbjct: 299 LMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDAIEFK----DISFTQVGKD 346


>gi|320661180|gb|EFX28611.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Escherichia coli O55:H7 str. USDA 5905]
          Length = 361

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 125/362 (34%), Positives = 181/362 (50%), Gaps = 18/362 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+A+GA
Sbjct: 1   MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI +   +
Sbjct: 61  TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M SE +     +L R      +I LK+  S D    M    S  IT   ++  V  LRAQ
Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMVSGESQWITSPQARRDVQRLRAQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKIIK 238
           S AIL    TVLADDP LT R + L               P+RI++D   +++ +  I++
Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDVQTQALYPQHHLRQPVRIVIDSQNRVTPEHHIVQ 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
                        +D        +  +   +    DL  L+  L  + + S+ VE G  +
Sbjct: 241 QPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTL 298

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           A + + + LVD +I+Y +  ++G           LE+      F      + G DVCL  
Sbjct: 299 AGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHL 358

Query: 355 IG 356
           +G
Sbjct: 359 VG 360


>gi|221231089|ref|YP_002510241.1| riboflavin biosynthesis protein [Streptococcus pneumoniae ATCC
           700669]
 gi|220673549|emb|CAR68035.1| riboflavin biosynthesis protein [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           and 5-amino-6-(5-phosphoribosylamino)uracil reductase]
           [Streptococcus pneumoniae ATCC 700669]
          Length = 366

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 117/367 (31%), Positives = 187/367 (50%), Gaps = 13/367 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G PHAE  AL+   E 
Sbjct: 3   DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + +
Sbjct: 63  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A+S D  I      S  IT   ++  VH 
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--ERKNPIRIICDTHLRTPLTSKIVKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356
            +  ++VD + +Y +  + G      P+    +      +R         G+D  +E   
Sbjct: 301 ALEQQIVDELKIYIAPKIFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359

Query: 357 KNLCLQE 363
              C QE
Sbjct: 360 IYPCSQE 366


>gi|332709146|ref|ZP_08429113.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Lyngbya
           majuscula 3L]
 gi|332352057|gb|EGJ31630.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Lyngbya
           majuscula 3L]
          Length = 372

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 116/363 (31%), Positives = 187/363 (51%), Gaps = 8/363 (2%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P +      +   ++ +R  +G T+ NP V C+IV++G ++G G     G PHAEV AL 
Sbjct: 10  PETPLAQAMIQRCIQLARQALGRTTPNPLVGCVIVRNGEIVGEGFHPAAGQPHAEVFALS 69

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           EAGE A+GAT YV LEPC+HYGR+PPC + +I+ G+ +VVV + DPD RVSG+G++ L  
Sbjct: 70  EAGENAQGATVYVNLEPCNHYGRTPPCTEALIKAGVAKVVVGMVDPDPRVSGKGIERLRA 129

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +V  + ES  +     ++ R + +R    LK A++ D  I      S  ITG  S+
Sbjct: 130 AGIEVVVGVEESACRQLNEGFIHRILYQRPLGILKYAMTLDGKIAATSGHSKWITGEKSR 189

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
           + VH LR+  DA++VG  TV  D+P LT         +P+R+I+     L  D+++ +T 
Sbjct: 190 SWVHQLRSACDAVIVGGNTVRQDNPNLTSHNPNAP--NPLRVIMSRTLDLPRDARVWQTD 247

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
            +  ++      +  L      + + ++  +     +++  L  R ++ +L E G  +A 
Sbjct: 248 DVPTLVFTEVGTEGDLYQHLVNQGVEVVVLNPLTPSRVMAYLYDRQLSRVLWECGGILAA 307

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYI 355
           + I    V  I+ + +  +IG  G PSP+ +  L           V     GSD  +E  
Sbjct: 308 NAIADGAVQKILAFIAPKIIGGHGGPSPVGDLGLTLMTDALTLERVSWRQLGSDYVVEGY 367

Query: 356 GKN 358
             N
Sbjct: 368 IPN 370


>gi|257059130|ref|YP_003137018.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 8802]
 gi|256589296|gb|ACV00183.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 8802]
          Length = 360

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 113/359 (31%), Positives = 186/359 (51%), Gaps = 8/359 (2%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M    FD + M   L+ +R  +G TS NP V  +IV++G ++G G     G PHAE+ AL
Sbjct: 1   MNSPDFDQQMMQRCLQLARQALGQTSPNPLVGSVIVQNGEIVGEGFHPKAGEPHAEIFAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +A E A+GAT YV+LEPC+HYGR+PPC   +I  G+ +VVV + DP+  VSG+G++ L 
Sbjct: 61  RQAQERAKGATVYVSLEPCNHYGRTPPCTDALIAAGVSKVVVGMVDPNPLVSGKGVEKLQ 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI +V  + ES  +    A++ R +  +    LK A++ D  I      S  ITG  S
Sbjct: 121 ESGIEVVVGVEESACRQLNEAFIHRILHHQPLGILKYAMTLDGKIAATTGHSAWITGTAS 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  VH +RA  DA++VG  T+  D+P LT     +   +P+R+++     L  ++ + +T
Sbjct: 181 RQLVHQVRAACDAVIVGGNTLRKDNPNLTTH--EVAGVNPLRVVMSKTLDLPSEANLWQT 238

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
            +   ++I     +  L    R + + +I         ++ +L  RG++S+L E G  +A
Sbjct: 239 DIAPTLVITERGRNSKLQAQLRDRGVEVIELASVTPSGVMQLLYERGLSSVLWECGGTLA 298

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
              I   ++  I+ + +  +IG    P P+ +  LEK         V       D+ +E
Sbjct: 299 AQAIADGVIQKIMAFIAPKIIGGTIAPCPIGDLGLEKMTQALALQRVTLQQIDGDILIE 357


>gi|295398347|ref|ZP_06808389.1| riboflavin biosynthesis protein RibD [Aerococcus viridans ATCC
           11563]
 gi|294973486|gb|EFG49271.1| riboflavin biosynthesis protein RibD [Aerococcus viridans ATCC
           11563]
          Length = 364

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 123/357 (34%), Positives = 190/357 (53%), Gaps = 13/357 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
           +M  AL  +    G T +NP V  +IVK+  +IGRG     G  HAE +AL++A   G +
Sbjct: 4   YMQEALDLAELGQGWTRSNPMVGAVIVKNSQIIGRGYHQQYGGLHAEREALKDANEQGHD 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            +GAT YVTLEPC H+G++PPC Q IIE GI +VVV   DP+  V+G+G+Q L    I +
Sbjct: 64  VKGATMYVTLEPCCHFGKTPPCTQAIIEGGIEKVVVAAIDPNPLVAGKGIQELRNHHIEV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++  E +     +      +R ++T+K A++ D         S  IT  I++  VH 
Sbjct: 124 ETGLLAEESEDLNRKFNYFMTHQRPYVTMKYAMTLDGRTAAYTGDSQWITDKIAREHVHY 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R ++ +I+VGIGTVLADDP LT R++  +  +P+RI+ D   KL L+S+++ TA   P 
Sbjct: 184 QRHRNQSIMVGIGTVLADDPALTVRIDDFEGINPIRIVCDTSLKLPLNSQLVATAKETPT 243

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           II T N +P    A++     ++    +    DL  L+T L  +G+ S+ VEGG+ +  S
Sbjct: 244 IIATINQNPEDHQAYQAAGCQLLVVKEKDNKVDLLDLITQLGQQGIQSIYVEGGSKLNAS 303

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLE 353
            + + L+  I  Y    VIG     SP+      +    +  +       G D+ +E
Sbjct: 304 LLEAGLIQEIHTYIGPKVIGGFDQYSPISGFGFPQMDQALTSNVQAITSLGKDLLIE 360


>gi|226329108|ref|ZP_03804626.1| hypothetical protein PROPEN_03011 [Proteus penneri ATCC 35198]
 gi|225202294|gb|EEG84648.1| hypothetical protein PROPEN_03011 [Proteus penneri ATCC 35198]
          Length = 384

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 119/368 (32%), Positives = 183/368 (49%), Gaps = 28/368 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  +      TS NP+V C+IVK+G ++G G   + G PHAEV AL+ AG++
Sbjct: 17  DEHYMRRAIELAALGRFTTSPNPNVGCVIVKEGEIVGEGYHHHAGGPHAEVNALKMAGDK 76

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GATAYVTLEPCSH+G++PPCA  +I  G++RVV  + DP+ +V+GRGL  L   GI +
Sbjct: 77  AKGATAYVTLEPCSHFGKTPPCADALINAGVKRVVAAMQDPNPQVAGRGLHKLLSAGIDV 136

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++  E +     +  R      +I LK+  S D    +A   S  IT   S+  V  
Sbjct: 137 SHGILMQEAEKLNVGFFKRMRTGFPYIQLKLGASLDGKTALASGESQWITSKASRRDVQN 196

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
            RAQ+ AIL    TVLAD+P +  R + L +             P+RI+ D   +++ + 
Sbjct: 197 FRAQASAILTTSATVLADNPSMNVRWDELSDEIKALYPEETLRQPIRIVADSQNRVTENH 256

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD------CRDLKKLLTILVGRGVT 288
           KI  T +     +        L  +  + N++ I           DL  L+  L  R + 
Sbjct: 257 KI--TQIEGECWLARTK----LQPSDWQGNVSEILLPTNGKNSGVDLVLLMMQLGKRNIN 310

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRD 344
           ++ VE GA  A + + + LVD +I+Y +  ++G+        SPL        F      
Sbjct: 311 TVWVESGAHFAGALLEAGLVDELIIYIAPKILGDDARGLFALSPLSSLSEAPEFTVDSLQ 370

Query: 345 YFGSDVCL 352
             GSD+ +
Sbjct: 371 QIGSDIRV 378


>gi|15900115|ref|NP_344719.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           TIGR4]
 gi|14971645|gb|AAK74359.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           TIGR4]
          Length = 366

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 118/367 (32%), Positives = 187/367 (50%), Gaps = 13/367 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G PHAE  AL+   E 
Sbjct: 3   DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + +
Sbjct: 63  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A+S D  I      S  IT   ++  VH 
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356
            +  ++VD + +Y +  V G      P+    +      +R         G+D  +E   
Sbjct: 301 ALEQQIVDELKIYIAPKVFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359

Query: 357 KNLCLQE 363
              C QE
Sbjct: 360 IYPCSQE 366


>gi|238893351|ref|YP_002918085.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Klebsiella pneumoniae NTUH-K2044]
 gi|262042437|ref|ZP_06015597.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|238545667|dbj|BAH62018.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|259040212|gb|EEW41323.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 367

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 126/365 (34%), Positives = 183/365 (50%), Gaps = 20/365 (5%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ +      T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEMYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +ARGATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KARGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIE 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M +E +     +L R       + LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMNEAEALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R   L               P+R+++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292
            +I++ A      +               + + +   +   DL  L+ +L  + + S+ V
Sbjct: 242 HRIVQQAGET---LFARLRADERQWPESARTLLVPEHNGHLDLVLLMMLLGKQQINSVWV 298

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGS 348
           E GA +A + + + LVD +I+Y +  ++G           LEE     +F        G 
Sbjct: 299 EAGATLAGALLQAGLVDELIVYIAPKLLGNAARGLCALPGLEELSQAPHFKFNEIRQVGP 358

Query: 349 DVCLE 353
           DVCL 
Sbjct: 359 DVCLH 363


>gi|225028184|ref|ZP_03717376.1| hypothetical protein EUBHAL_02456 [Eubacterium hallii DSM 3353]
 gi|224954496|gb|EEG35705.1| hypothetical protein EUBHAL_02456 [Eubacterium hallii DSM 3353]
          Length = 411

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 123/413 (29%), Positives = 188/413 (45%), Gaps = 63/413 (15%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           MP    + ++M  A+  ++   G  + NP V  +IVKDG +IG G     G  HAE  A+
Sbjct: 1   MP----EEKYMRRAIELAKKGSGHVNPNPLVGAVIVKDGEIIGEGYHECYGQLHAERNAI 56

Query: 61  EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
             A   G    G+T YVTLEPC HYG++PPC + IIE  I RVVV  DDP+  VSG+G +
Sbjct: 57  ANARKRGNNIEGSTIYVTLEPCCHYGKTPPCTEAIIEEKIARVVVGSDDPNPLVSGKGFK 116

Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
            L +KGI ++   ++ E     H +         ++ +K A++ D  I      S  +TG
Sbjct: 117 LLREKGIEVIPHFLKEECDAMNHVFFHYISTGTPYVAMKYAMTMDGKIACYTGDSKWVTG 176

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
             S+  V  LR     I+ GIGTVLADDP L+CR+ G     P+RII D H ++ +DS++
Sbjct: 177 EESRAHVQTLRNHYKGIMAGIGTVLADDPMLSCRIEG--GRDPVRIIADSHLRIPMDSQL 234

Query: 237 IKTALLAPVIIVT-ENDDPVLALAFRKKNINIIYCDC----------------------- 272
           ++TA   P+I+    + D   A+   +K + ++                           
Sbjct: 235 VRTAKQQPLIVACLPDADETKAVQLEEKGVEVLRIPGIAVNDFSGSSSDSVLKYKDRLLA 294

Query: 273 ------------------------RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
                                     L  L+  L  R +  +L+EGG  +  S + + +V
Sbjct: 295 DNLADNNISREVDSDIIEEKQKEVISLPVLMKELGSRKIDGILLEGGGQLNESALQAGIV 354

Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356
             +  Y +  + G     +P+E   L K     +F  +    FG D+ LEY  
Sbjct: 355 QRVYCYIAPKIFGGAQAKTPVEGQGLAKAADAWHFTRIGMQEFGQDILLEYER 407


>gi|330006909|ref|ZP_08305781.1| riboflavin biosynthesis protein RibD [Klebsiella sp. MS 92-3]
 gi|328535663|gb|EGF62112.1| riboflavin biosynthesis protein RibD [Klebsiella sp. MS 92-3]
          Length = 367

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 126/365 (34%), Positives = 183/365 (50%), Gaps = 20/365 (5%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ +      T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEMYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +ARGATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KARGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIE 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M +E +     +L R       + LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMNEAEALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R   L               P+R+++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292
            +I++ A      +               + + +   +   DL  L+ +L  + + S+ V
Sbjct: 242 HRIVQQAGET---LFARLRADERQWPESARTLLVPEHNGHLDLVLLMMLLGKQQINSVWV 298

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGS 348
           E GA +A + + + LVD +I+Y +  ++G           LEE     +F        G 
Sbjct: 299 EAGATLAGALLQAGLVDELIVYIAPKLLGNAARGLCALPGLEELNQAPHFKFNEIRQVGP 358

Query: 349 DVCLE 353
           DVCL 
Sbjct: 359 DVCLH 363


>gi|317047149|ref|YP_004114797.1| riboflavin biosynthesis protein RibD [Pantoea sp. At-9b]
 gi|316948766|gb|ADU68241.1| riboflavin biosynthesis protein RibD [Pantoea sp. At-9b]
          Length = 370

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 123/367 (33%), Positives = 181/367 (49%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D R+M+ AL  +R     T+ NP+V C+IV+DG ++G G     G PHAEV AL  AGE
Sbjct: 2   IDERYMARALELARRGCFTTTPNPNVGCVIVRDGEIVGEGWHHRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +ARGATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KARGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIA 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M +  +     +L R       I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMNAAEAINRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSAAARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
             RAQS AIL    TVLAD+P LT R N L +             P+R+++D   +++  
Sbjct: 182 RFRAQSSAILTTSATVLADNPSLTVRWNELNDEVRQQLDEQQLRQPVRVVIDSQQRVTPQ 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            ++I        ++ +  D  V   +  +  +        DL  ++ +L  R + S+ VE
Sbjct: 242 HRLIDQPGE-TWLMRSAPDQHVWPESVTQIAVPQRESQ-LDLVAMMMLLGQRQINSVWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            GA +A + + + LVD +I+Y +  ++G           LE                G D
Sbjct: 300 AGAKLAGALLQAGLVDELIVYLAPKLLGNAARGLCELPGLEHLAAAPALNFSDVRRVGGD 359

Query: 350 VCLEYIG 356
           + L    
Sbjct: 360 LRLTLTP 366


>gi|282896327|ref|ZP_06304349.1| Riboflavin biosynthesis protein RibD [Raphidiopsis brookii D9]
 gi|281198823|gb|EFA73702.1| Riboflavin biosynthesis protein RibD [Raphidiopsis brookii D9]
          Length = 376

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 109/355 (30%), Positives = 177/355 (49%), Gaps = 8/355 (2%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
            FDA  M   L+ +R  +G TS NP V  ++VKDG ++G G     G PH EV AL  AG
Sbjct: 15  EFDALMMQRCLQLARLALGRTSPNPLVGAVVVKDGEIVGEGFHPRAGEPHGEVFALRAAG 74

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGAT YV+LEPC+HYGR+PPC+  +I  G+ +VVV + DP+  V+G G+  L   GI
Sbjct: 75  ERARGATIYVSLEPCNHYGRTPPCSLSLINAGVAKVVVGMVDPNPLVAGAGIARLRAAGI 134

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            ++  + E   +     ++ R + ++    LK A++ D  I      S  IT   ++++V
Sbjct: 135 EVIVGVEEEACQKLNEGFVYRILHQKPLGILKYAMTLDGKIASNSGHSTWITNNQARSEV 194

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H LRA  DA++VG  TV  D+P+LT        ++P+R+++     L  ++ +  T +  
Sbjct: 195 HQLRAACDAVIVGGNTVRRDNPQLTTHQQA--GYNPLRVVMSASLNLPENAHLWDTGVAP 252

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            +++  E   P       +K + ++         ++  L  RG  ++L E G  +A   I
Sbjct: 253 TLVLTQEGSSPNFQQMLLQKGVEVLELPLLTPGLVMAHLYERGFCTVLWECGGTLAARAI 312

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
               V  ++ + +  +IG    P+P+ +  L           V     G D  +E
Sbjct: 313 AENAVQKVLAFIAPKIIGGIYAPTPVGDLGLNSMTESLVLERVNWRTVGCDCLVE 367


>gi|152968939|ref|YP_001334048.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150953788|gb|ABR75818.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 367

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 127/364 (34%), Positives = 183/364 (50%), Gaps = 18/364 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ +      T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEMYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +ARGATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KARGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIE 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M +E +     +L R       + LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMNEAEALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R   L               P+R+++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++ A     +      D        +  +   +    DL  L+ +L  + + S+ VE
Sbjct: 242 HRIVQQAGE--TLFARLRADARQWPESARTLLVPEHNGHLDLVLLMMLLGKQQINSVWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSD 349
            GA +A + + + LVD +I+Y +  ++G           LEE     +F        G D
Sbjct: 300 AGATLAGALLQAGLVDELIVYIAPKLLGNTARGLCALPGLEELSQAPHFKFNEIRQVGPD 359

Query: 350 VCLE 353
           VCL 
Sbjct: 360 VCLH 363


>gi|320540315|ref|ZP_08039967.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Serratia symbiotica str. Tucson]
 gi|320029635|gb|EFW11662.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Serratia symbiotica str. Tucson]
          Length = 371

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 188/367 (51%), Gaps = 18/367 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A + +R     T+ NP+V C+IV+DG ++G G     G PHAEV AL  AGE+
Sbjct: 4   DVFYMARAFKLARLGRFTTAPNPNVGCVIVRDGEIVGEGYHLRAGEPHAEVHALCMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+ +V+GRGL  L Q GI +
Sbjct: 64  ARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVTAMQDPNPQVAGRGLYQLQQAGIEV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R      ++ LK+AVS D    MA   S  IT   ++  V  
Sbjct: 124 CHGLMLAEAEAVNPGFLKRMRTGFPYVQLKLAVSLDGRTAMASGESQWITSSQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L               P RIILD   +++   
Sbjct: 184 LRAQSAAILSTSATVLADDPALTVRWDELDAETQSLYPQENLRQPWRIILDSQNRVTPQH 243

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           ++++        +     D        ++ I   +    DL  ++  L  R V S+ VE 
Sbjct: 244 RVVQQPGA--TWLARLQPDKQAWPQDVEQLIFPAHGGGVDLVVMMMHLAKRQVNSIWVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           GA ++ + + + LVD ++LY +  ++G+ G        LE+      F+       G D+
Sbjct: 302 GAQLSGALLQAVLVDELVLYLAPKLLGDDGRGLCHLPGLEQLADAPEFVFSEVRQVGPDL 361

Query: 351 CLEYIGK 357
            L    K
Sbjct: 362 RLRLRAK 368


>gi|256027507|ref|ZP_05441341.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium
           sp. D11]
 gi|289765470|ref|ZP_06524848.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium sp. D11]
 gi|289717025|gb|EFD81037.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium sp. D11]
          Length = 370

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 121/365 (33%), Positives = 201/365 (55%), Gaps = 17/365 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D ++M+ A+  ++   G  + NP V  ++VKDG +IG G     G PHAEV AL EAG
Sbjct: 4   NSDEKYMARAIELAKRGTGSVNPNPLVGAVVVKDGKIIGEGWHKKYGGPHAEVWALNEAG 63

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E A+GAT YVTLEPCSH G++PPCA+ IIE GI++ VV   DP+  V+G+G++ +   GI
Sbjct: 64  ENAKGATIYVTLEPCSHQGKTPPCAKRIIEAGIKKCVVACIDPNPLVAGKGIKIIEDAGI 123

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++E E K     +L     K  ++ LK  ++ D  I      S  IT  I++ +V
Sbjct: 124 EVKLGILEKEAKDVNKIFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKV 183

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKT 239
             LR +  AI+VGI TVL D+P L  RL+    G+++ +P R+++DP+ +  +++K +  
Sbjct: 184 QFLRTKFMAIMVGINTVLKDNPSLDSRLDEKKFGIEKRNPFRVVIDPNLESPIEAKFLNF 243

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNI--NIIYCDCRD--LKKLLTILVGRGVTSLLVEGG 295
                 IIVT ND+  L      KN+    I+ + +   +K +L  L   G+ S+L+EGG
Sbjct: 244 N-DGKAIIVTSNDNRELEKIKEYKNLGTRFIFLEGKIFKMKDILKELGKLGIDSVLLEGG 302

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV------RRDYFGSD 349
           + +  +     ++D+  ++ +  +IG+     P   G+   N   V      + + +G +
Sbjct: 303 SGLISTAFKENIIDAGEIFIAPKIIGDNSA-IPFINGFNFDNMEDVFKLPNSKFNIYGDN 361

Query: 350 VCLEY 354
           + +E+
Sbjct: 362 ISIEF 366


>gi|228934673|ref|ZP_04097506.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824925|gb|EEM70724.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 360

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 120/352 (34%), Positives = 187/352 (53%), Gaps = 10/352 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  ++   G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARG 
Sbjct: 1   MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARGG 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPCSH+GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  +
Sbjct: 61  TIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            E + K     +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R +
Sbjct: 121 CEEKSKKMNEVFNKYIMTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHKIRNE 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           + AILVG  TV  D+P LT R+      +P+R+ILD   ++ +++ ++        I  T
Sbjct: 181 NAAILVGANTVQKDNPSLTTRIP--NGRNPIRVILDSTLRIPMEANVVTDGEAPTWIFTT 238

Query: 250 ENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
            N             + +         +L ++L +L  +GV+SLL+EGG  V  SFI + 
Sbjct: 239 SNHAAEKRKVLESAGVKVFVTSGEKHINLYEMLDVLGQKGVSSLLIEGGGEVNASFIENE 298

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           L+D +ILY +  +IG    PS +E   + K    +       D+    +GK+
Sbjct: 299 LMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDAIEFK----DISFTPVGKD 346


>gi|238791408|ref|ZP_04635046.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
           intermedia ATCC 29909]
 gi|238729024|gb|EEQ20540.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
           intermedia ATCC 29909]
          Length = 369

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 122/367 (33%), Positives = 182/367 (49%), Gaps = 18/367 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     T  NP+V C++V+DG ++G G     G PHAEV AL  AGE+
Sbjct: 4   DEFYMARAFELARLGRFTTPPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSH+G +PPCA  ++  G+ RVV  + DP+ +V+GRGL  L Q GI +
Sbjct: 64  ARGATAYVTLEPCSHHGCTPPCADALVAAGVIRVVAAMQDPNPQVAGRGLYKLKQAGIAV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M ++ +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 124 DHGLMLAQAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
            RA+S AIL    TVLADDP LT R + L               P+RIILD H +++ + 
Sbjct: 184 FRAESSAILSTSATVLADDPSLTVRWSELDAQTQALYPQDSLRQPVRIILDSHNRVTPEH 243

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           ++ +   L    +     D        ++ +   +    DL  L+  L  R + S+ VE 
Sbjct: 244 QVTQQNGL--CWLARVEADQQPWPDNVEQLLLPRHGGGVDLVLLMMQLGKRQINSVWVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           G  +A + + + +VD +ILY +  ++G         + L        F+       G D+
Sbjct: 302 GPQLAGALLQAGVVDELILYIAPKLLGSDARGLCQLAGLTHLSQAPEFVFSDVRQVGPDL 361

Query: 351 CLEYIGK 357
            L    K
Sbjct: 362 RLRLKPK 368


>gi|238927494|ref|ZP_04659254.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Selenomonas
           flueggei ATCC 43531]
 gi|238884776|gb|EEQ48414.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Selenomonas
           flueggei ATCC 43531]
          Length = 386

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 141/364 (38%), Positives = 199/364 (54%), Gaps = 7/364 (1%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++  D  +M  AL  + +  G TS NP V  LIV+DGIV   G     G PHAE+ AL  
Sbjct: 20  MNETDESYMREALHLAEFARGRTSPNPLVGALIVRDGIVAASGWHRAAGEPHAEIHALRM 79

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGAT YVTLEPC+H GR+ PCA+ +I  GI RVVV + DP+  V+GRG+  L   
Sbjct: 80  AGELARGATLYVTLEPCAHQGRTGPCAKAVIAAGITRVVVALRDPNPLVAGRGIAMLEAA 139

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +V  +  +E +    A+LT    KR  +TLK A++ D  I      S  ITG  ++ 
Sbjct: 140 GIEVVTGVCAAEARRQNAAFLTWVTTKRPLVTLKTAMTLDGKIASHTGASRWITGEEARL 199

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +VH +R  SDAILVGIGTVLADDP LT RL      +P+R++LD   +   D++++    
Sbjct: 200 RVHEMRDASDAILVGIGTVLADDPSLTTRLPHRAGKNPLRVVLDSAARTPHDARLVTDGA 259

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
              VI V+E  D       R     ++    +  +L ++L  L  R  TSLLVEGGAAV 
Sbjct: 260 APTVIAVSERADQRRVDRLRACGAEVVTLGAERVELPRVLDWLGARDCTSLLVEGGAAVN 319

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
            SF+    VD I  + + +++G G  P+P+     +     +       D+ +E +G +L
Sbjct: 320 WSFLAGGYVDRICAFIAPMLMGGGEAPTPVGGVGFDAPQEALHLY----DMHVEQVGADL 375

Query: 360 CLQE 363
            +  
Sbjct: 376 LVTG 379


>gi|291534448|emb|CBL07560.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Roseburia intestinalis M50/1]
          Length = 366

 Score =  363 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 118/358 (32%), Positives = 185/358 (51%), Gaps = 15/358 (4%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
            R+M  A+  +    G T TNP V  ++VK+  +IG G     G  HAE +AL +    G
Sbjct: 4   ERYMRRAMELAELGRGWTKTNPVVGAVLVKEDRIIGEGYHKKFGGLHAEREALADCRSRG 63

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E+  GA  YVTLEPC HYG++PPC Q +IE GI  V V  +D +  V+G G++ L ++GI
Sbjct: 64  EDPAGADLYVTLEPCCHYGKTPPCTQAVIEAGISHVFVGAEDINPLVAGAGIRQLREQGI 123

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            + + +++ E +     +      K  ++ +K A++ D  I  A   S  ITG  ++ QV
Sbjct: 124 LVTEGVLQEECEYQNRVFFHYIQTKLPYVRMKYAMTLDGKIASASGKSQWITGEAAREQV 183

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H +R +   I+VG GTV+ADDP L CRL   Q   P+RI+ D   ++ L S+I++TA   
Sbjct: 184 HRMRHEMTGIMVGAGTVIADDPMLNCRLP--QTKDPVRIVCDTTLRIPLKSRIVQTAEEQ 241

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVA 299
             II T   D      ++K    II  +      DLK+L+  L   G+ S+L+EGGA + 
Sbjct: 242 NTIIATCCQDEAKIREYQKYGCRIIVTEHADGKVDLKELMRQLGADGIESVLLEGGAMLN 301

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCL 352
            S + + +V+ +  Y +  + G     SP+    ++        +  R    G D+ +
Sbjct: 302 WSALEAGIVNEVYAYVAPKLFGGADAKSPVAGIGVDYPDDAYCLVSQRVQQVGEDILI 359


>gi|194016547|ref|ZP_03055161.1| riboflavin biosynthesis protein RibD [Bacillus pumilus ATCC 7061]
 gi|194012020|gb|EDW21588.1| riboflavin biosynthesis protein RibD [Bacillus pumilus ATCC 7061]
          Length = 356

 Score =  363 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 121/357 (33%), Positives = 190/357 (53%), Gaps = 10/357 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ +L  +R   G TS NP V  +IV+D  ++G G     G PHAE+ AL+ AG++A+GA
Sbjct: 1   MNLSLENARAMKGQTSPNPLVGAVIVRDNEIVGVGAHMKAGEPHAEIHALKMAGDKAKGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPCSH+GR+ PCA+ +++ G+  VVV   DP+  V+GRG+  L   GI ++  +
Sbjct: 61  TIYVTLEPCSHHGRTGPCAEALVKAGVETVVVAALDPNPLVAGRGIAILQDAGIQVITGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E E  +    +     +K   +TLK  ++ D  I  A   S  IT   S+   H +R+ 
Sbjct: 121 LEQESILMNEVFNHFITKKTPFVTLKAGITLDGKIASATSDSKWITSETSRYDAHHIRSI 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           +DAILVG  TV+ DDP LT R+     H P+RI+LD      L +KI+   +    I  T
Sbjct: 181 NDAILVGAQTVIHDDPSLTARIP--NGHHPIRIVLDSRLSTPLTAKIVTDQMAPTWIFTT 238

Query: 250 ENDDPVLALAFRKKNINIIYCDCRD---LKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           +  D     A     +++   D      L+++L +L  R V+SL++EGG  +  SF+  +
Sbjct: 239 KQADEEKRAALEAAGVSVFVTDSETRVPLQEVLQMLGERNVSSLMIEGGGQINASFLEQQ 298

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQE 363
           LVD +++Y +  +IG    PS      +      +  D       +E +GK++ +  
Sbjct: 299 LVDKLVIYMAPKLIGGRLSPSFFGGEGIRLMSDAIELDQL----SVETLGKDIKITG 351


>gi|254410513|ref|ZP_05024292.1| riboflavin biosynthesis protein RibD [Microcoleus chthonoplastes
           PCC 7420]
 gi|196182719|gb|EDX77704.1| riboflavin biosynthesis protein RibD [Microcoleus chthonoplastes
           PCC 7420]
          Length = 380

 Score =  363 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 114/357 (31%), Positives = 185/357 (51%), Gaps = 8/357 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            + FD   M   +  +R  +G TS NP V  +IV+DG ++G G     G PHAE+ AL +
Sbjct: 22  WTPFDRTMMQRCIELARRALGRTSPNPLVGAVIVRDGAMVGEGFHPGAGQPHAEIFALRQ 81

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG++++GAT YV LEPC+HYGR+PPC + +I  G+ +VVV + DP+  V+G G++ L + 
Sbjct: 82  AGDKSQGATIYVNLEPCNHYGRTPPCTEALIAAGVAKVVVGMVDPNPLVAGGGIERLKKA 141

Query: 123 GIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V   +E+E       A++ R + KR    LK A++ D  I  A   S  +TG  ++ 
Sbjct: 142 GIEVVVGVETEACRQLNEAFIHRILHKRPWGMLKYAMTLDGKIATASGHSAWVTGQEARR 201

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH LR   DA++VG  TV  D+P LT        H+P+R+++     L +D+++ +TA 
Sbjct: 202 YVHQLRTACDAVIVGGNTVRLDNPHLTSH--DTDTHNPLRVVMSRTLDLPIDARLWETAD 259

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
              +++     +P L      K + +I        K +  L  R ++++L E G  +A  
Sbjct: 260 APTLVLTEIGANPDLQHQLVNKGVEVIEMTPLTPAKAMAYLYDRQLSTVLWECGGTLAAR 319

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
            I    V  ++ + +  ++G    PSP+ +  L +         V     GSD  +E
Sbjct: 320 AIADGTVQKVLAFIAPKIVGGITAPSPVGDLGLARMTDALTLEQVSWRQLGSDYVVE 376


>gi|148987916|ref|ZP_01819379.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
           SP6-BS73]
 gi|147926380|gb|EDK77453.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
           SP6-BS73]
          Length = 366

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 117/367 (31%), Positives = 187/367 (50%), Gaps = 13/367 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G PHAE  AL+   E 
Sbjct: 3   DSKYMKLAIKLAQKGAGYVNPNPMVGAIIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + +
Sbjct: 63  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A+S D  I      S  IT   ++  VH 
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356
            +  ++VD + +Y +  + G      P+    +      +R         G+D  +E   
Sbjct: 301 ALEQQIVDELKIYIAPKIFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359

Query: 357 KNLCLQE 363
              C QE
Sbjct: 360 IYPCSQE 366


>gi|225851435|ref|YP_002731669.1| riboflavin biosynthesis protein RibD [Persephonella marina EX-H1]
 gi|225645583|gb|ACO03769.1| riboflavin biosynthesis protein RibD [Persephonella marina EX-H1]
          Length = 365

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 128/362 (35%), Positives = 180/362 (49%), Gaps = 14/362 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D  FM  ALR +    GLT  NP+V  +IVKDG +IG+G     G PHAE +A+ +A   
Sbjct: 6   DEIFMKEALRLAELRKGLTHPNPTVGAVIVKDGKIIGKGFHKKAGMPHAEREAINDAIKK 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G    G+T YVTLEPC HYGR+PPC + II+  I+RVV+   DP+ +VSG+G++ L + G
Sbjct: 66  GFNLEGSTMYVTLEPCCHYGRTPPCTEAIIDRRIKRVVIATVDPNPQVSGKGVEILKKHG 125

Query: 124 IIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I     +++ E +     +     EKR  I LKIA S D  I      S  IT   S+  
Sbjct: 126 IETVVGVLQDEARKLNEDFFVYIKEKRPFIHLKIAQSLDGKIATGTGSSKWITSEESRRY 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LR +S AI+VG  TVL D+P LT R     E  P+R++LD   K+  D  +      
Sbjct: 186 VHKLRRESTAIMVGTNTVLKDNPNLTVRYTE-TERQPLRVVLDKDLKIPEDYNVFNNE-A 243

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298
             V+  ++  D         K + I+    +    DL  +L  L    V  L +EGG  +
Sbjct: 244 KTVLFTSDIADRNKIKRLEDKGVQIVRLPLKNRRFDLNDILKNLYSLDVVHLFIEGGRDL 303

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLEY 354
              F+  +L D I ++ +  +IGE GI S  + G        N        FG D+ L+ 
Sbjct: 304 ITQFLKEKLFDRISVFIAPKIIGEDGISSFGKLGIDTVDKSINLHLEDIKRFGDDILLQL 363

Query: 355 IG 356
             
Sbjct: 364 RP 365


>gi|83311440|ref|YP_421704.1| riboflavin biosynthesis protein ribD [Magnetospirillum magneticum
           AMB-1]
 gi|82946281|dbj|BAE51145.1| Riboflavin biosynthesis protein ribD [Magnetospirillum magneticum
           AMB-1]
          Length = 375

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 142/363 (39%), Positives = 206/363 (56%), Gaps = 11/363 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D   M AAL  +R  +G    NP+V C+IVKDG V+GRG T  GG PHAE +AL  AG
Sbjct: 12  EIDLGHMRAALALARRGLGTVWPNPAVGCVIVKDGRVVGRGWTQPGGRPHAETEALAMAG 71

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
             A GAT YVTLEPC+H+G++ PCA  ++  G+ RVVV V DPD RV+G+G+  L   GI
Sbjct: 72  SAALGATVYVTLEPCAHHGKTAPCADALVAAGVSRVVVAVQDPDSRVAGKGVDRLRVAGI 131

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            + + ++ +E       +  R    R  +TLK+A + D  I      S  ITG  +++  
Sbjct: 132 PVTEGVLHAEAAELNAGFFLRINTGRPLVTLKLATTLDGRIATHTGESRWITGDQARSAA 191

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           HLLRA++DAI+VG GT L DDP+LTCRL GL E SP+R+++D   +L L S+++ TA   
Sbjct: 192 HLLRAETDAIMVGSGTALHDDPDLTCRLPGLVERSPVRVVVDGRLRLPLTSRLVATANDV 251

Query: 244 PVIIVTENDDPV-LALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAA 297
           P  ++T  D  V    A+    ++++          DL+  L  L   GVT +LVEGGA 
Sbjct: 252 PTWLLTLEDCDVNRREAYEDAGVDVVEVSPGADGAIDLELALQALGESGVTRVLVEGGAH 311

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLE 353
           ++ + + + LVD ++ +R+  ++G  G+P+ +  G        +F  V     G DV   
Sbjct: 312 LSAALLRAGLVDRMVWFRAPRLMGGDGLPAAVSFGIDHLAQTPHFERVEIRPVGDDVMET 371

Query: 354 YIG 356
           YI 
Sbjct: 372 YIR 374


>gi|304437387|ref|ZP_07397346.1| riboflavin biosynthesis protein RibD [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304369643|gb|EFM23309.1| riboflavin biosynthesis protein RibD [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 367

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 142/364 (39%), Positives = 200/364 (54%), Gaps = 7/364 (1%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++  D  +M  AL  + +  G TS NP V  LIV+DGIV   G     G PHAE+ AL  
Sbjct: 1   MNETDESYMREALHLAEFARGRTSPNPLVGALIVRDGIVAASGWHRAAGEPHAEIHALRM 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGAT YVTLEPC+H GR+ PCA+ +I  GI RVVV + DP+  V+GRG+  L   
Sbjct: 61  AGELARGATLYVTLEPCAHQGRTGPCAKAVIAAGITRVVVALRDPNPLVAGRGIAMLEAA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +V  +  +E +    A+LT    KR  +TLK A++ D  I      S  ITG  ++ 
Sbjct: 121 GIEVVTGVCAAEARRQNAAFLTWVTTKRPLVTLKTAMTLDGKIASHTGASRWITGEEARL 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +VH +R  SDAILVGIGTVLADDP LT RL      +P+R++LD   +   D++++    
Sbjct: 181 RVHEMRDASDAILVGIGTVLADDPSLTTRLPHRAGKNPLRVVLDSAARTPHDARLVTDGA 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
              VI V+E  DP      R     ++    +  +L +LL  L     TSLLVEGGAAV 
Sbjct: 241 APTVIAVSERADPQRVDRLRACGAEVVTLGAERVELPRLLDWLGAHDCTSLLVEGGAAVN 300

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
            SF++   VD I  + + +++G G  P+P+     +     +       D+ +E +G +L
Sbjct: 301 WSFLSGGYVDRICAFIAPMLMGGGEAPTPVGGVGFDAPQEALHLH----DMHVEQVGADL 356

Query: 360 CLQE 363
            +  
Sbjct: 357 LVTG 360


>gi|15602614|ref|NP_245686.1| hypothetical protein PM0749 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721046|gb|AAK02833.1| RibD [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 376

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 130/373 (34%), Positives = 195/373 (52%), Gaps = 19/373 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  ++ D  +M  AL  +      T+ NPSV C++VKDGI++GRG     G  HAEV AL
Sbjct: 2   MTFTAQDVVYMQMALELAEKGQFTTTPNPSVGCVLVKDGIIVGRGFHVKAGEAHAEVMAL 61

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAGE ARGATAYVTLEPCSH+GR+PPCAQ +I+ G+ +VV  + DP+ +V+GRGL  LS
Sbjct: 62  REAGENARGATAYVTLEPCSHFGRTPPCAQGLIDAGVVKVVSAMCDPNPQVAGRGLSMLS 121

Query: 121 QKGIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI     + +E   +    +L R    R ++ LK+A+S D    MA   S  ITG ++
Sbjct: 122 DAGIESAVGLLAEKAEWLNRGFLKRMRTGRPYVQLKMAMSLDGRTAMANGESKWITGELA 181

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228
           +  V   RA++ AIL    TVLADDP L  R   L +             P+R+ILD   
Sbjct: 182 RADVQAERAKASAILSTSATVLADDPLLNVRWQQLPDKVKADYTQAQLRQPVRVILDSQH 241

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           ++    ++   +L +PV +V++    +L      + I  +      L  L+  L  R + 
Sbjct: 242 RVQPSHRLF--SLSSPVWLVSQTARSLLEFPAHCEQIQ-LSASTNALADLMAELGQRQIN 298

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI---PSP-LEEGYLEKNFMCVRRD 344
           +L +E GA +A + I ++LVD +I+Y +  ++G+        P L        +     +
Sbjct: 299 TLWIEAGATLAGALIEAKLVDELIIYIAPKLLGDAARGLCKLPHLSTLAEASLWQLHSIE 358

Query: 345 YFGSDVCLEYIGK 357
             G D+   Y  +
Sbjct: 359 KLGDDLKTIYHPR 371


>gi|126030525|pdb|2G6V|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli
 gi|126030526|pdb|2G6V|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli
 gi|134105114|pdb|2OBC|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In
           Complex With A Substrate Analogue, Ribose 5-Phosphate
           (Beta Form), Bound To The Active Site Of The Reductase
           Domain
 gi|134105115|pdb|2OBC|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli In
           Complex With A Substrate Analogue, Ribose 5-Phosphate
           (Beta Form), Bound To The Active Site Of The Reductase
           Domain
          Length = 402

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 126/367 (34%), Positives = 181/367 (49%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  + + AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 29  QDEYYXARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRXAGE 88

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV    DP+ +V+GRGL  L Q GI 
Sbjct: 89  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASXQDPNPQVAGRGLYRLQQAGID 148

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +  SE +     +L R      +I LK+  S D     A   S  IT   ++  V 
Sbjct: 149 VSHGLXXSEAEQLNKGFLKRXRTGFPYIQLKLGASLDGRTAXASGESQWITSPQARRDVQ 208

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
           LLRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++  
Sbjct: 209 LLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPV 268

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L   L  + + S+ VE
Sbjct: 269 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLXXQLGKQQINSIWVE 326

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 327 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 386

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 387 VCLHLVG 393


>gi|183603379|ref|ZP_02714555.2| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           SP195]
 gi|183571310|gb|EDT91838.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           SP195]
          Length = 384

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 116/367 (31%), Positives = 186/367 (50%), Gaps = 13/367 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G PHAE  AL+   E 
Sbjct: 21  DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 80

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + +
Sbjct: 81  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 140

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A+S D  I      S  IT   ++  V  
Sbjct: 141 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVQQ 200

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 201 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 258

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S
Sbjct: 259 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 318

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356
            +  ++VD + +Y +  + G      P+    +      +R         G+D  +E   
Sbjct: 319 ALEQQIVDELKIYIAPKIFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 377

Query: 357 KNLCLQE 363
              C QE
Sbjct: 378 IYPCSQE 384


>gi|148992759|ref|ZP_01822402.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
           SP9-BS68]
 gi|147928485|gb|EDK79500.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
           SP9-BS68]
 gi|332075850|gb|EGI86317.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           GA17570]
          Length = 366

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 116/367 (31%), Positives = 186/367 (50%), Gaps = 13/367 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G PHAE  AL+   E 
Sbjct: 3   DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + +
Sbjct: 63  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A+S D  I      S  IT   ++  V  
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVQQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356
            +  ++VD + +Y +  + G      P+    +      +R         G+D  +E   
Sbjct: 301 ALEQQIVDELKIYIAPKIFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359

Query: 357 KNLCLQE 363
              C QE
Sbjct: 360 IYPCSQE 366


>gi|56751317|ref|YP_172018.1| riboflavin biosynthesis protein RibD [Synechococcus elongatus PCC
           6301]
 gi|56686276|dbj|BAD79498.1| riboflavin biosynthesis protein RibD [Synechococcus elongatus PCC
           6301]
          Length = 368

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 111/367 (30%), Positives = 191/367 (52%), Gaps = 8/367 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S  D ++M   L  +    G T+ NP V C+IV+   ++G G     G PHAEV AL +
Sbjct: 1   MSDRDRQYMQRCLELAAQAAGQTAPNPMVGCIIVQGEEIVGEGFHPAAGQPHAEVFALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ ARGAT YV LEPC+HYGR+PPC++ ++  G++RVVV + DPD RV+G G+  L Q 
Sbjct: 61  AGDRARGATLYVNLEPCNHYGRTPPCSEAVVAAGLKRVVVGMVDPDPRVTGGGIARLQQA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   + ++  +    A++ R  ++R    LK A++ D  I  +   S  ++   S+ 
Sbjct: 121 GIEVTVGVEQAACEQMNEAFVWRVTQRRPFGILKYAMTLDGRIAASTGHSAWVSSPESRR 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           QVH LR+Q DA++VG  TV  D+P LTC    + +  P+R+++     L L++ + +T +
Sbjct: 181 QVHSLRSQVDAVIVGGNTVRLDNPRLTCH--DISDRHPLRVVMSRRLDLPLEANLWQTDI 238

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
              ++   E  D         + + ++        ++   L  RG+++LL E G  +A +
Sbjct: 239 APTLVFTEETADRDRWRKLEDQGVEVVVRSPLTPSEVSAELFNRGLSTLLWECGGTLAAA 298

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLEYIG 356
            +   L+  ++ + +  +IG     SP+ +  L +    ++ +       G D+C     
Sbjct: 299 ALREGLIQKLLAFIAPKLIGGPPGYSPVGDLGLLRMDQALKVERSQWQAIGPDLCWTAYL 358

Query: 357 KNLCLQE 363
             +  QE
Sbjct: 359 DLVSGQE 365


>gi|225860210|ref|YP_002741719.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298230114|ref|ZP_06963795.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255023|ref|ZP_06978609.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298501980|ref|YP_003723920.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|225726901|gb|ACO22752.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298237575|gb|ADI68706.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|327390586|gb|EGE88926.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           GA04375]
          Length = 366

 Score =  362 bits (929), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 115/367 (31%), Positives = 186/367 (50%), Gaps = 13/367 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G  HAE  AL+   E 
Sbjct: 3   DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGSHAERNALKNCRES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + +
Sbjct: 63  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A++ D  I      S  IT   ++  VH 
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMTIDGKIATKTNQSKWITEEEARKHVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356
            +  ++VD + +Y +  + G      P+    +      +R         G+D  +E   
Sbjct: 301 ALEQQIVDELKIYIAPKIFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359

Query: 357 KNLCLQE 363
              C QE
Sbjct: 360 IYPCSQE 366


>gi|77410804|ref|ZP_00787162.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
           CJB111]
 gi|77163183|gb|EAO74136.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
           CJB111]
          Length = 369

 Score =  362 bits (929), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 115/356 (32%), Positives = 188/356 (52%), Gaps = 12/356 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M+ AL+ +   +G  + NP V  +IVKD  +I +G     G  HAE QA++ A E+ 
Sbjct: 5   EDYMALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDI 64

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
            G+T YVTLEPC H G+ PPC + +I+ GI++VVV   DP+  VSG+G+  L ++G+ + 
Sbjct: 65  SGSTLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVE 124

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++  E       ++     K+  + LK A++ D  I      S  I+   S+  V  L
Sbjct: 125 VGILREECDALNERFIFYMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKL 184

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R +  AI+VGI TVLAD+P LTCR+   +    +RI+ D   K+ LDS ++K+A   P  
Sbjct: 185 RQKCSAIMVGINTVLADNPRLTCRIPKGEAL--VRIVCDSQLKIPLDSYLVKSAKTIPTW 242

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           I T +D+       ++    +I    +    DLK L+TIL   G+ SLL+EGG+++  S 
Sbjct: 243 IATCSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQEGIDSLLIEGGSSLHFSA 302

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLE 353
           + + +V+ +I++ +  +IG     + +    L+          +      SDV +E
Sbjct: 303 LKAGIVNRLIVFIAPKIIGGLKAKTAISGEGLDWLNQAFRVKDIELSRMDSDVVIE 358


>gi|288936867|ref|YP_003440926.1| riboflavin biosynthesis protein RibD [Klebsiella variicola At-22]
 gi|290510077|ref|ZP_06549447.1| riboflavin biosynthesis protein RibD [Klebsiella sp. 1_1_55]
 gi|288891576|gb|ADC59894.1| riboflavin biosynthesis protein RibD [Klebsiella variicola At-22]
 gi|289776793|gb|EFD84791.1| riboflavin biosynthesis protein RibD [Klebsiella sp. 1_1_55]
          Length = 367

 Score =  362 bits (929), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 128/364 (35%), Positives = 183/364 (50%), Gaps = 18/364 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ +      T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEMYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAQGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M +E +     +L R       + LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMNEAEALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R   L               P+R+++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++ A     +      D        +  +   Y    DL  L+ +L  + V S+ VE
Sbjct: 242 HRIVQQAGE--TLFARLRADERQWPESVRTLLVPEYNGHLDLVLLMMLLGKQQVNSVWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSD 349
            GA +A + + + LVD +I+Y +  ++G           LEE     +F        G D
Sbjct: 300 AGATLAGALLQAGLVDELIVYIAPKLLGNAARGLCALPGLEELSQAPHFKFNEIRQVGPD 359

Query: 350 VCLE 353
           VCL 
Sbjct: 360 VCLH 363


>gi|332202099|gb|EGJ16168.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           GA41317]
          Length = 366

 Score =  362 bits (929), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 115/367 (31%), Positives = 186/367 (50%), Gaps = 13/367 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G  HAE  AL+   E 
Sbjct: 3   DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGSHAERNALKNCRES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + +
Sbjct: 63  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A++ D  I      S  IT   ++  VH 
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMTMDGKIATKTNQSKWITEEEARKHVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356
            +  ++VD + +Y +  + G      P+    +      +R         G+D  +E   
Sbjct: 301 ALEQQIVDELKIYIAPKIFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359

Query: 357 KNLCLQE 363
              C QE
Sbjct: 360 IYPCSQE 366


>gi|194397666|ref|YP_002036884.1| riboflavin biosynthesis protein [Streptococcus pneumoniae G54]
 gi|194357333|gb|ACF55781.1| riboflavin biosynthesis protein [Streptococcus pneumoniae G54]
          Length = 366

 Score =  362 bits (929), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 116/367 (31%), Positives = 186/367 (50%), Gaps = 13/367 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G  HAE  AL+   E 
Sbjct: 3   DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGSHAERNALKNCRES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + +
Sbjct: 63  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A+S D  I      S  IT   ++  VH 
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356
            +  ++VD + +Y +  + G      P+    +      +R         G+D  +E   
Sbjct: 301 ALEQQIVDELKIYIAPKIFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359

Query: 357 KNLCLQE 363
              C QE
Sbjct: 360 IYPCSQE 366


>gi|304395476|ref|ZP_07377359.1| riboflavin biosynthesis protein RibD [Pantoea sp. aB]
 gi|304356770|gb|EFM21134.1| riboflavin biosynthesis protein RibD [Pantoea sp. aB]
          Length = 366

 Score =  362 bits (929), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 179/368 (48%), Gaps = 18/368 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL  +R     T  NP+V C+IV+DG V G G     G PHAEV AL  AGE
Sbjct: 1   MDELYMARALELARRGRFTTMPNPNVGCVIVRDGEVAGEGWHQRAGEPHAEVHALRMAGE 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +ARGATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 61  KARGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLHRLHQSGIA 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M  E +     +L R       I LK+  S D    MA   S  IT   ++  V 
Sbjct: 121 VSHGLMMPEAEALNRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSAAARRDVQ 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R + L               P+R+I+D   +++  
Sbjct: 181 RLRAQSAAILSSSATVLADDPSLTVRWSELDPESQSLLDEQQLRQPVRVIVDSQNRVTPQ 240

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            ++I         ++    D     A   +    +     DL  ++ +L  + + S+ VE
Sbjct: 241 HRLISQPGE--TWLMRHQPDQQHWPAEVTQIAVPLREQQLDLVAMMMLLGQKQINSVWVE 298

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            GA++A + + + LVD +I+Y +  ++G  G        L        F        G D
Sbjct: 299 AGASLAGALLQAGLVDELIVYLAPKLLGHEGRGLCQLPGLRSLADAPAFRFSDVRQVGDD 358

Query: 350 VCLEYIGK 357
           + L    +
Sbjct: 359 LRLTLTPQ 366


>gi|319898992|ref|YP_004159085.1| Riboflavin biosynthesis protein ribD [Bartonella clarridgeiae 73]
 gi|319402956|emb|CBI76507.1| Riboflavin biosynthesis protein ribD [Bartonella clarridgeiae 73]
          Length = 374

 Score =  362 bits (929), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 155/374 (41%), Positives = 227/374 (60%), Gaps = 12/374 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI----VIGRGVTAYGGCPHAE 56
           M   + D RFM+AA+R +  H+ LT  NPSV  LIVK+      ++G GVTA  G PHAE
Sbjct: 1   MSREAQDKRFMAAAIRLAERHINLTGKNPSVGALIVKNNETDASIVGYGVTAVQGRPHAE 60

Query: 57  VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           VQAL  AG  A GATAY+TLEPCSHYG++PPC   +I+ GI RVV+ + DPD RV GRG+
Sbjct: 61  VQALLMAGPLAYGATAYITLEPCSHYGKTPPCVNALIDAGIARVVIALPDPDQRVYGRGI 120

Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
             L   GI +V+ ++  E    L AYL  +  +R  +TLK+A+S DN +G  G  ++ I+
Sbjct: 121 ALLRSAGIEVVEGVLAEEAFETLSAYLCVKKLQRCEVTLKMAISADNGVGKKGQSNLKIS 180

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
           G IS +Q H+LRAQ+D I+VGIGT+LADDP+L CRL GL+  SP+R+ILD + ++ LD+K
Sbjct: 181 GEISHSQTHILRAQNDVIMVGIGTILADDPKLDCRLPGLEMRSPIRVILDKNLRIPLDAK 240

Query: 236 IIKTALLAPVIIVTEN--DDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTS 289
           +++TA   P  ++           +A  +  + +   +  +       +L +L  R + S
Sbjct: 241 VVQTAANIPTWVICGTVLSKKRKKIALEQYGVTVCSVEANNNLIPPLAILRLLYQRKINS 300

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           +L+EGGA     F+N+  VD +I + + I++G+  I +P  E YL + F  +     G+D
Sbjct: 301 VLLEGGAKTGEIFLNASCVDRLICFYAPIILGKDRIEAPHFESYLSE-FNKIEMRMLGND 359

Query: 350 VCLEYIGKNLCLQE 363
              ++  K LC Q 
Sbjct: 360 RLYKWRRKILCSQG 373


>gi|322807186|emb|CBZ04760.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Clostridium
           botulinum H04402 065]
          Length = 365

 Score =  362 bits (929), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 118/358 (32%), Positives = 190/358 (53%), Gaps = 15/358 (4%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
            +M  AL+ +    G  + NP V  ++VK+  +IG G   Y G PHAEV AL EAGE A+
Sbjct: 6   FYMEKALKLAERGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGPHAEVYALREAGERAK 65

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GAT YVTLEPCSHYG++PPCA+ I++ GI + ++ + DP+  V GRG+  L Q GI +V 
Sbjct: 66  GATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVT 125

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            +ME E K     ++    +K+  + LK A + D  I      S  ITG  ++ +VH +R
Sbjct: 126 GIMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATKTGESKWITGEEARYKVHQIR 185

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
                I+VGIGT++ D+P L  R+   +  SP  II+D   ++ L+SKI++T     + I
Sbjct: 186 NDLSGIMVGIGTIIKDNPLLNTRIE--RGRSPKAIIVDSSLRIPLESKILETLNERTIYI 243

Query: 248 VTEN--DDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAH 300
            T     +P    A       ++  +  +     L +L+  L   GV S+L+EGG+ +  
Sbjct: 244 ATTKKHKNPSKKNALENLGAKVLEFEENEEGKVPLNELMQYLGSEGVDSILLEGGSTLNF 303

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
           S +   +VD ++ + +  ++G     + +    +E      N   ++ +  G D+ +E
Sbjct: 304 SALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVESLKDIFNLQNLKFEKIGQDILIE 361


>gi|119509555|ref|ZP_01628702.1| Riboflavin biosynthesis protein RibD [Nodularia spumigena CCY9414]
 gi|119465744|gb|EAW46634.1| Riboflavin biosynthesis protein RibD [Nodularia spumigena CCY9414]
          Length = 448

 Score =  362 bits (929), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 119/364 (32%), Positives = 179/364 (49%), Gaps = 16/364 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S FD   M   L  +R  +G TS NP V  ++VKDG ++G G     G PHAEV AL+ A
Sbjct: 79  SDFDQAMMQRCLALARRALGRTSPNPLVGAVVVKDGEIVGEGFHPCAGEPHAEVFALKAA 138

Query: 64  G--------EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           G          A GAT YV LEPC+H+GR+PPC++ +I  G+ +VVV + DP+  V G G
Sbjct: 139 GVGADSTQENRACGATVYVNLEPCNHHGRTPPCSEALIAAGVAKVVVGIVDPNPLVGGGG 198

Query: 116 LQWLSQKGIIVDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           +  L   G+ V   +E++       A++ R V KR    LK A++ D  I      S  +
Sbjct: 199 IARLRAAGVEVVVGVEAQACYQLNEAFIHRIVHKRPLGILKYAMTLDGKIATTSGHSAWV 258

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           T   ++++VH LRA  DAI+VG  TV  D+P LT    G   H+P+R+++     L  D+
Sbjct: 259 TNQDARSEVHQLRAGCDAIIVGGNTVRKDNPYLTSHQVGA--HNPLRVVMSRQLNLPEDA 316

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           ++  TA    V+   E   P      R++ + ++       + ++T L  RG  S+L E 
Sbjct: 317 RLWDTAEAPTVVFTEEGSSPDFQSFLRQQGVEVVELTSLTPELVMTNLYDRGFCSVLWEC 376

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSD 349
           G  +A S I    V  I+ + +  +IG     +P+ +              V     GSD
Sbjct: 377 GGTLAASAIAQGAVQKILAFIAPKIIGGSHAATPVGDLGFTIMTEALTLERVSWRVVGSD 436

Query: 350 VCLE 353
             +E
Sbjct: 437 CLVE 440


>gi|301064689|ref|ZP_07205078.1| riboflavin biosynthesis protein RibD [delta proteobacterium NaphS2]
 gi|300441231|gb|EFK05607.1| riboflavin biosynthesis protein RibD [delta proteobacterium NaphS2]
          Length = 369

 Score =  361 bits (928), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 127/362 (35%), Positives = 193/362 (53%), Gaps = 12/362 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   D  FM  A++ +R  +G TS NP+V  +IVK+G V+  G     G PHAEV+A  +
Sbjct: 1   MEKNDTHFMKLAVKEARKGLGRTSPNPAVGAVIVKEGRVVASGFHKQAGMPHAEVEAFRK 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
            G  A GAT YVTLEPC+H+G++PPC + I++ G++RVVV + DP+  V+G G  +L +K
Sbjct: 61  VGNRAPGATLYVTLEPCNHHGKTPPCTELILKSGVKRVVVGMRDPNPLVTGGGCDYLEKK 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +V  ++E E      A+       R  +  K A++ D     +   S  IT   S++
Sbjct: 121 GLEVVTGILEDECIRLNEAFTKFITTGRPFVIAKSAITLDGWTATSAHHSQWITNEKSRH 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH LR + DA+L+GIGTVLADDP +T RL   +   P RI++D +F+    +K++K   
Sbjct: 181 FVHRLRDRVDAVLMGIGTVLADDPAMTARLGAKKGKDPTRIVVDTNFRTPAGAKVMKHDS 240

Query: 242 LAPVIIVT--ENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGG 295
            AP II T  E +          K +  + C    D  DL  L+  L    +TS+LVEGG
Sbjct: 241 TAPTIIATSVEGNRSRPDRGKHPKGVETLVCPKQGDKLDLNWLMDKLGEMSITSILVEGG 300

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG-GIPSPLEEG----YLEKNFMCVRRDYFGSDV 350
           + +  + I ++L+D   ++ +  ++G G GIP     G                 FG DV
Sbjct: 301 SMILGAMIRAQLIDKFYVFIAPKILGGGDGIPMAAGAGPKTMDDSLGLKDTSVRRFGDDV 360

Query: 351 CL 352
            +
Sbjct: 361 LI 362


>gi|19704838|ref|NP_602333.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|296327621|ref|ZP_06870165.1| riboflavin biosynthesis protein RibD [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|19712714|gb|AAL93632.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|296155267|gb|EFG96040.1| riboflavin biosynthesis protein RibD [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 369

 Score =  361 bits (928), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 122/365 (33%), Positives = 199/365 (54%), Gaps = 17/365 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D ++M+ A+  ++   G  + NP V  +IVKDG +IG G     G PHAEV AL EAG
Sbjct: 4   NSDEKYMARAIELAKRGTGGVNPNPLVGAVIVKDGKIIGEGWHKKFGGPHAEVWALNEAG 63

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E A+GAT YVTLEPCSH G++PPCA+ IIE GI+R VV   DP+  V+G+G++ +   GI
Sbjct: 64  ENAKGATVYVTLEPCSHQGKTPPCAKRIIEAGIKRCVVACIDPNPLVAGKGMKIIENAGI 123

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V+  ++E E K     +      K  ++ LK  ++ D  I      S  IT  I++ +V
Sbjct: 124 EVELGVLEKEAKEINKIFFKYIENKIPYLFLKCGITLDGKIATRNGKSKWITNEIAREKV 183

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKT 239
             LR +  AI+VGI TVL D+P L  RL+    G+++ +P R+++DP+ +  ++ K +  
Sbjct: 184 QFLRTKFMAIMVGINTVLKDNPSLDSRLDEKKFGIEKRNPFRVVIDPNLESPIEGKFLNF 243

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGG 295
                 IIVT ND+  L    + KN+  I+         ++ +L  L   G+ S+L+EGG
Sbjct: 244 N-DGKAIIVTSNDNKGLEKLEKYKNLGTIFIFLEGKIFKIQDILKELGKLGIDSVLLEGG 302

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV------RRDYFGSD 349
           + +  +     +VD+  ++ +  +IG+     P   G+   +   V      + + +G +
Sbjct: 303 SGLISTAFKENIVDAGEIFIAPKIIGDSSA-IPFINGFNFDSMEDVFKLPNPKFNIYGDN 361

Query: 350 VCLEY 354
           + +E+
Sbjct: 362 ISIEF 366


>gi|22536910|ref|NP_687761.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
           2603V/R]
 gi|76788660|ref|YP_329494.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
           A909]
 gi|77406006|ref|ZP_00783084.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
           H36B]
 gi|22533761|gb|AAM99633.1|AE014225_16 riboflavin biosynthesis protein RibD [Streptococcus agalactiae
           2603V/R]
 gi|76563717|gb|ABA46301.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
           A909]
 gi|77175401|gb|EAO78192.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
           H36B]
          Length = 369

 Score =  361 bits (928), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 115/356 (32%), Positives = 188/356 (52%), Gaps = 12/356 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M+ AL+ +   +G  + NP V  +IVKD  +I +G     G  HAE QA++ A E+ 
Sbjct: 5   EDYMALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDI 64

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
            G+T YVTLEPC H G+ PPC + +I+ GI++VVV   DP+  VSG+G+  L ++G+ + 
Sbjct: 65  SGSTLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVE 124

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++  E       ++     K+  + LK A++ D  I      S  I+   S+  V  L
Sbjct: 125 VGILREECDALNERFIFHMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKL 184

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R +  AI+VGI TVLAD+P LTCR+   +    +RI+ D   K+ LDS ++K+A   P  
Sbjct: 185 RQKCSAIMVGINTVLADNPRLTCRIPKGEAL--VRIVCDSQLKIPLDSYLVKSAKTIPTW 242

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           I T +D+       ++    +I    +    DLK L+TIL   G+ SLL+EGG+++  S 
Sbjct: 243 IATCSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQEGIDSLLIEGGSSLHFSA 302

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLE 353
           + + +V+ +I++ +  +IG     + +    L+          +      SDV +E
Sbjct: 303 LKAGIVNRLIVFIAPKIIGGLKAKTAISGEGLDWLNQAFRVKDIELSRMDSDVVIE 358


>gi|325289915|ref|YP_004266096.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965316|gb|ADY56095.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 398

 Score =  361 bits (928), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 119/361 (32%), Positives = 180/361 (49%), Gaps = 14/361 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D  +M  AL  +    G TS NP V CLIVKDG++IG G     G PHAEV AL  
Sbjct: 35  FSDQDKFYMQRALDLAEMAEGRTSPNPMVGCLIVKDGLIIGEGYHQKAGTPHAEVHALTA 94

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ A GA  YVTLEPCSH+GR+PPC   +I+ G++RV V + DP+  V G+G+Q +   
Sbjct: 95  AGKRASGADVYVTLEPCSHFGRTPPCCDALIQAGVKRVFVALVDPNPLVRGKGIQKMRAA 154

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E+E       ++         +  K A + D         S  IT  +S+ 
Sbjct: 155 GIEVFTGLLENEAAKLNEPFVKAMKTNLPFVLYKSASTADGKTASCTGDSRWITNDLSRK 214

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH LR   D I+VG  T+L D+P+LTCR+ G     P+R+I+D    +  +++++  + 
Sbjct: 215 YVHELRNSYDVIMVGSKTILQDNPQLTCRIAG--GRHPVRLIVDGTLSIPEEARLLSLSE 272

Query: 242 LAPVIIVTENDDPVLALAFRKK--NINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGA 296
            + +I  T    P      +K   NI +          LK L+  ++ +G  S+L+EGG 
Sbjct: 273 GSTIIATTRAASPKKIDKLKKIRNNIEVWVYSEERYVPLKTLMQDILEKGYQSVLLEGGG 332

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYFGSDVC 351
            +A   I  +LVD + L+ +  +IG+    SP+                +    F  D+ 
Sbjct: 333 TLAGQMIAEKLVDKVNLFIAPKIIGQSSF-SPISGFCINSMADAVMIREMEMKEFAGDIL 391

Query: 352 L 352
           L
Sbjct: 392 L 392


>gi|167746303|ref|ZP_02418430.1| hypothetical protein ANACAC_01012 [Anaerostipes caccae DSM 14662]
 gi|167654296|gb|EDR98425.1| hypothetical protein ANACAC_01012 [Anaerostipes caccae DSM 14662]
          Length = 354

 Score =  361 bits (928), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 117/354 (33%), Positives = 184/354 (51%), Gaps = 13/354 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A+  ++   G T+ NP V  +IVKDG VIG G     G  HAE  AL+   E+ +GA
Sbjct: 1   MRRAIELAQKGTGHTNPNPLVGAVIVKDGQVIGEGFHEAYGGLHAERNALKSCTEDPKGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
             YVTLEPC HYG++PPC + +I+ GIR+V V   DP+ +V+G G++ L + GI +   +
Sbjct: 61  ELYVTLEPCCHYGKTPPCTEAVIKSGIRKVYVGNVDPNPKVAGMGIKILREHGIKVETGI 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           ++ E +     +         ++ LK A++ D  I +    S  ITG  ++  V  LR +
Sbjct: 121 LDEECRELNDIFFYYITHDTPYVALKYAMTLDGKIAVKTGESKWITGGEAREHVQFLRHR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
             AIL GI TV+ DDP L  R+ G   ++P+R+I D   ++ + SKI+++A + P II  
Sbjct: 181 YAAILTGIHTVIGDDPMLNARIEG--GNNPVRVICDSRLRIPISSKIVQSAKVIPTIIAA 238

Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
              +   A         ++ C  +    DL +L+ IL    + S+LVEGGA +  S I +
Sbjct: 239 CERN-EKAQRLEALGCRVLICPGKDGKTDLLELMRILRKEKIDSVLVEGGADINDSVIQA 297

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVCLEY 354
             V+ +  + +  + G     SP+E   ++K    +         FG D+ LEY
Sbjct: 298 GAVNKVYAFIAPKIFGGRQARSPVEGEGVDKISDALLLNGPEITRFGEDLLLEY 351


>gi|260495221|ref|ZP_05815349.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_33]
 gi|260197278|gb|EEW94797.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_33]
          Length = 369

 Score =  361 bits (928), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 200/365 (54%), Gaps = 17/365 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D ++M+ A+  ++   G  + NP V  ++VKDG +IG G     G PHAEV AL EAG
Sbjct: 4   NSDEKYMARAIELAKRGTGSVNPNPLVGAVVVKDGKIIGEGWHKKYGGPHAEVWALNEAG 63

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E A+GAT YVTLEPCSH G++PPCA+ I+E GI+R VV   DP+  V+G+G++ +   GI
Sbjct: 64  ENAKGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVVACIDPNPLVAGKGIKIIEDAGI 123

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++E E K     +L     K  ++ LK  ++ D  I      S  IT  I++ +V
Sbjct: 124 EVKLGVLEKEAKDVNKIFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKV 183

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKT 239
             LR +  AI+VGI TVL D+P L  RL+    G+++ +P R+++DP+ +  +++K +  
Sbjct: 184 QFLRTKFMAIMVGINTVLKDNPSLDSRLDEKKFGIEKRNPFRVVIDPNLESPIEAKFLNF 243

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNI--NIIYCDCRD--LKKLLTILVGRGVTSLLVEGG 295
                 II+T ND+  L      KN+    I+ + +   +K +L  L    + S+L+EGG
Sbjct: 244 N-DGKAIIITSNDNRELEKIKEYKNLGTRFIFLEGKIFKMKDILKELGKLEIDSVLLEGG 302

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV------RRDYFGSD 349
           + +  +     ++D+  ++ +  +IG+     P   G+   N   V      + + +G +
Sbjct: 303 SGLISTAFKENIIDAAEIFIAPKIIGDNSA-IPFINGFNFDNMEDVFKLPNPKFNIYGDN 361

Query: 350 VCLEY 354
           + +E+
Sbjct: 362 ISIEF 366


>gi|156935037|ref|YP_001438953.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Cronobacter sakazakii ATCC BAA-894]
 gi|156533291|gb|ABU78117.1| hypothetical protein ESA_02888 [Cronobacter sakazakii ATCC BAA-894]
          Length = 367

 Score =  361 bits (928), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 126/363 (34%), Positives = 178/363 (49%), Gaps = 18/363 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ +      T  NP V C+IVK+G+++G G     G PHAEV AL  AG++
Sbjct: 3   DEFYMARALKLAGQGRFTTHPNPRVGCVIVKEGVIVGEGFHLRAGGPHAEVHALRMAGDK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI +
Sbjct: 63  ARGATAYVTLEPCSHHGRTPPCCDALINAGVARVVAAMQDPNPQVAGRGLYRLQQAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R       I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPFIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
           LRA+S AIL    TVLADDP +T R + L E             P+RI+LD   +++   
Sbjct: 183 LRAESHAILTTSATVLADDPSMTVRWDELGEETQAVYPRENLRQPLRIVLDRQNQVTPAH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           KI+         +     D  +     ++    ++    DL  L+  L  R V SL VE 
Sbjct: 243 KIVNQPGE--TWLARACPDDTVWPEGVEQLPTPVHNGKLDLVLLMMQLGKRQVNSLWVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDV 350
           G  +A + + + LVD +I+Y +  ++G           LE                G D+
Sbjct: 301 GPQLAGALLQAGLVDELIVYMAPKLLGSEARGLFALPGLERLADAPRLEFRDAVQIGPDL 360

Query: 351 CLE 353
            L 
Sbjct: 361 RLR 363


>gi|225620931|ref|YP_002722189.1| riboflavin biosynthesis protein RibD [Brachyspira hyodysenteriae
           WA1]
 gi|225215751|gb|ACN84485.1| riboflavin biosynthesis protein RibD [Brachyspira hyodysenteriae
           WA1]
          Length = 360

 Score =  361 bits (928), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 124/361 (34%), Positives = 181/361 (50%), Gaps = 16/361 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
           M  A+  ++   G TS NP V  +IVKDG VIG G     G  HAE+ A  +A   GE  
Sbjct: 1   MKMAIEEAKKGEGFTSPNPLVGAVIVKDGKVIGIGYHKKCGENHAEINAFLDAKEKGENV 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
             A  YVTLEPCSHYG++PPCA  II+  ++RV++   D + +V+G G++ L   GI ++
Sbjct: 61  EDADIYVTLEPCSHYGKTPPCADAIIKNKLKRVIIGCVDSNPKVAGNGIKKLKDAGIEVI 120

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++E E +     +      KR  I +K A++ D  I      S  IT   ++   H  
Sbjct: 121 VNVLEEECRKLNEVFFYYIANKRPFIVMKYAMTIDGKIATVSGKSKWITSEKTREHSHRF 180

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R +  AI+VGI TV+ D+P L CRL      +P+RIILD   K+ LDS I KTA      
Sbjct: 181 RNKYSAIMVGINTVIEDNPTLNCRLP--NTRNPIRIILDSSLKMGLDSNICKTAKEIKTF 238

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILV-GRGVTSLLVEGGAAVAHS 301
           I T +DD           I II  +  +    LK L+ IL   + + S+ VEGGAA+  S
Sbjct: 239 IATISDDDKKIKELENVGIEIIKTENDNGKVSLKDLMRILGEEKDIDSVYVEGGAALHAS 298

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLEYIG 356
            +  +LV+  ++Y +  + G      P+   +++     V+           D+ LEY  
Sbjct: 299 LLKEKLVNKALIYIAPKIFGGFEAKGPIGGEWIDDPNDAVKLVEGSITKIEDDLFLEYYL 358

Query: 357 K 357
           K
Sbjct: 359 K 359


>gi|313898762|ref|ZP_07832296.1| riboflavin biosynthesis protein RibD [Clostridium sp. HGF2]
 gi|319935115|ref|ZP_08009555.1| riboflavin biosynthesis protein RibD [Coprobacillus sp. 29_1]
 gi|312956344|gb|EFR37978.1| riboflavin biosynthesis protein RibD [Clostridium sp. HGF2]
 gi|319809940|gb|EFW06323.1| riboflavin biosynthesis protein RibD [Coprobacillus sp. 29_1]
          Length = 366

 Score =  361 bits (928), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 124/367 (33%), Positives = 185/367 (50%), Gaps = 13/367 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A++ ++   G  + NP V  +IVKD  +IG+G     G  HAE  AL+   E 
Sbjct: 3   DTEYMKLAIKLAKKGAGYVNPNPMVGAVIVKDNRIIGQGYHEIFGGLHAERNALKNCRES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GAT YVTLEPC HYG++PPC + II+ GI RVVV   D +  VSG+G++ L +  I +
Sbjct: 63  PVGATLYVTLEPCCHYGKTPPCTEAIIKSGITRVVVGTLDCNPIVSGKGVKVLEENNIQV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++E E +  +  +         ++ +K A++ D  I      S  I+G  ++ QVH 
Sbjct: 123 VIGILEMECQQLIKVFRKYVTRHIPYVFMKYAMTMDGKIATYTNQSKWISGEKARKQVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R +  AI+VG+ TV+ DDP LTCRL      +P+RI+ D   +  + SKIIKTA     
Sbjct: 183 FRHKVTAIMVGVNTVIQDDPLLTCRLE--NGENPIRIVCDTDLRTPITSKIIKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T + D      +RK    IIY   +    DL  L+  L    + SLL+EGG+A+  S
Sbjct: 241 YIATSSIDESKIALYRKCGCEIIYTKKKGNHIDLMNLMQCLGNMQIDSLLLEGGSAMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIG 356
            +  ++VD + +Y +  + G     SP+    +                 G+D  +E   
Sbjct: 301 ALEQQIVDEVQIYIAPKIFGGS-AKSPVSGQGVAFPNDAIMLKPYAFSQVGNDYFIESEV 359

Query: 357 KNLCLQE 363
              CLQE
Sbjct: 360 IYPCLQE 366


>gi|291086763|ref|ZP_06344381.2| riboflavin biosynthesis protein RibD [Clostridium sp. M62/1]
 gi|291076874|gb|EFE14238.1| riboflavin biosynthesis protein RibD [Clostridium sp. M62/1]
          Length = 383

 Score =  361 bits (928), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 124/367 (33%), Positives = 185/367 (50%), Gaps = 13/367 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A++ ++   G  + NP V  +IVKD  +IG+G     G  HAE  AL+   E 
Sbjct: 20  DTEYMKLAIKLAKKGAGYVNPNPMVGAVIVKDNRIIGQGYHEIFGGLHAERNALKNCRES 79

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GAT YVTLEPC HYG++PPC + II+ GI RVVV   D +  VSG+G++ L +  I +
Sbjct: 80  PVGATLYVTLEPCCHYGKTPPCTEAIIKSGITRVVVGTLDCNPIVSGKGVKVLEENNIQV 139

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++E E +  +  +         ++ +K A++ D  I      S  I+G  ++ QVH 
Sbjct: 140 VIGILEMECQQLIKVFRKYVTRHIPYVFMKYAMTMDGKIATYTNQSKWISGEKARKQVHQ 199

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R +  AI+VG+ TV+ DDP LTCRL      +P+RI+ D   +  + SKIIKTA     
Sbjct: 200 FRHKVTAIMVGVNTVIQDDPLLTCRLE--NGENPIRIVCDTDLRTPITSKIIKTANDIKT 257

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T + D      +RK    IIY   +    DL  L+  L    + SLL+EGG+A+  S
Sbjct: 258 YIATSSIDESKIALYRKCGCEIIYTKKKGNHIDLMNLMQCLGNMQIDSLLLEGGSAMNWS 317

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIG 356
            +  ++VD + +Y +  + G     SP+    +                 G+D  +E   
Sbjct: 318 ALEQQIVDEVQIYIAPKIFGGS-AKSPVSGQGVAFPNDAIMLKPYAFSQVGNDYFIESEV 376

Query: 357 KNLCLQE 363
              CLQE
Sbjct: 377 IYPCLQE 383


>gi|301799334|emb|CBW31869.1| riboflavin biosynthesis protein [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           and 5-amino-6-(5-phosphoribosylamino)uracil reductase]
           [Streptococcus pneumoniae OXC141]
          Length = 366

 Score =  361 bits (927), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 116/367 (31%), Positives = 188/367 (51%), Gaps = 13/367 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G PHAE  AL+   + 
Sbjct: 3   DSKYMKLAIKLAQKGAGYVNPNPMVGAIIVKDNHIIGQGYHEFFGGPHAERNALKNCRKS 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + +
Sbjct: 63  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A+S D  I      S  IT   ++  VH 
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 183 LRHYVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356
            +  ++VD + +Y +  + G      P+    +  +   +R         G+D  +E   
Sbjct: 301 ALEQQIVDELKIYIAPKIFGGS-AKFPVGGEGISLSNDAIRLKPYAFSQIGNDYLIESEV 359

Query: 357 KNLCLQE 363
              C QE
Sbjct: 360 IYPCSQE 366


>gi|206578559|ref|YP_002240118.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae 342]
 gi|206567617|gb|ACI09393.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae 342]
          Length = 367

 Score =  361 bits (927), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 128/364 (35%), Positives = 183/364 (50%), Gaps = 18/364 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ +      T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEMYMARALKLATRGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAQGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M +E +     +L R       + LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMNEAEALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R   L               P+R+++D   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++ A     +      D        +  +   Y    DL  L+ +L  + V S+ VE
Sbjct: 242 HRIVQQAGE--TLFARLRADERQWPESVRTLLVPEYNGHLDLVLLMMLLGKQQVNSVWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSD 349
            GA +A + + + LVD +I+Y +  ++G           LEE     +F        G D
Sbjct: 300 AGATLAGALLQAGLVDELIVYIAPKLLGNAARGLCALPGLEELSQAPHFKFNEIRQVGPD 359

Query: 350 VCLE 353
           VCL 
Sbjct: 360 VCLH 363


>gi|149005931|ref|ZP_01829660.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
           SP18-BS74]
 gi|168483819|ref|ZP_02708771.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           CDC1873-00]
 gi|225855949|ref|YP_002737460.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           P1031]
 gi|307126404|ref|YP_003878435.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           670-6B]
 gi|147762287|gb|EDK69248.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
           SP18-BS74]
 gi|172042835|gb|EDT50881.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           CDC1873-00]
 gi|225725798|gb|ACO21650.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           P1031]
 gi|306483466|gb|ADM90335.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           670-6B]
 gi|332076629|gb|EGI87091.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           GA17545]
 gi|332203340|gb|EGJ17407.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           GA47368]
          Length = 366

 Score =  361 bits (927), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 116/367 (31%), Positives = 187/367 (50%), Gaps = 13/367 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G PHAE  AL+   + 
Sbjct: 3   DSKYMKLAIKLAQKGAGYVNPNPMVGAIIVKDNHIIGQGYHEFFGGPHAERNALKNCRKS 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + +
Sbjct: 63  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A+S D  I      S  IT   ++  VH 
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356
            +  ++VD + +Y +  + G      P+    +      +R         G+D  +E   
Sbjct: 301 ALEQQIVDELKIYIAPKIFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359

Query: 357 KNLCLQE 363
              C QE
Sbjct: 360 IYPCSQE 366


>gi|225858039|ref|YP_002739549.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           70585]
 gi|225721875|gb|ACO17729.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           70585]
          Length = 366

 Score =  361 bits (927), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 117/367 (31%), Positives = 187/367 (50%), Gaps = 13/367 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G PHAE  AL+   E 
Sbjct: 3   DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + +
Sbjct: 63  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A+S D  I      S  IT   ++  VH 
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356
            +  ++VD + +Y +  + G      P+    +      +R         G+D  +E   
Sbjct: 301 ALEQQIVDELKIYIASKIFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359

Query: 357 KNLCLQE 363
              C QE
Sbjct: 360 IYPCSQE 366


>gi|168493876|ref|ZP_02718019.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           CDC3059-06]
 gi|169833009|ref|YP_001693699.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           Hungary19A-6]
 gi|168995511|gb|ACA36123.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           Hungary19A-6]
 gi|183576084|gb|EDT96612.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
           CDC3059-06]
          Length = 366

 Score =  361 bits (927), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 116/367 (31%), Positives = 187/367 (50%), Gaps = 13/367 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+++M  A++ ++   G  + NP V  +IVKD  +IG+G   + G PHAE  AL+   + 
Sbjct: 3   DSKYMKLAIKLAQKGAGYVNPNPMVGAIIVKDNHIIGQGYHEFFGGPHAERNALKNCRKS 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GAT YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + +
Sbjct: 63  PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E    + ++     +   ++ +K A+S D  I      S  IT   ++  VH 
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR    AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA     
Sbjct: 183 LRHYVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356
            +  ++VD + +Y +  + G      P+    +      +R         G+D  +E   
Sbjct: 301 ALEQQIVDELKIYIAPKIFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359

Query: 357 KNLCLQE 363
              C QE
Sbjct: 360 IYPCSQE 366


>gi|30248797|ref|NP_840867.1| riboflavin biosynthesis bifunctional RibD [Nitrosomonas europaea
           ATCC 19718]
 gi|30180392|emb|CAD84704.1| Riboflavin biosynthesis bifunctional RibD [Nitrosomonas europaea
           ATCC 19718]
          Length = 363

 Score =  361 bits (927), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 118/359 (32%), Positives = 182/359 (50%), Gaps = 12/359 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            ++ D  +MS ALR +   +  TS NP V C+IV  G V+G G     G PHAE+ AL +
Sbjct: 2   FTALDYEYMSHALRLAERGLFTTSPNPRVGCVIVNGGKVVGTGWHERAGEPHAEIHALRK 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ A+GAT YVTLEPCSH+GR+PPC + +I+ G+ +VV+ ++DP+  V+G+G +WL + 
Sbjct: 62  AGDLAKGATVYVTLEPCSHHGRTPPCVEALIQAGVCKVVMAMNDPNPHVNGQGKEWLQKA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI I   ++  + +     ++TR    R  +  KIA S D    +    S  IT   ++ 
Sbjct: 122 GIAIQAGLLADQAERLNIGFVTRMRHDRPWVRTKIAASFDGRTALKNGKSQWITSEPARR 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
             H  RA+S AIL GI +V  DDP+LT R   +    PMRI++D + +  L +K+++ A 
Sbjct: 182 DGHKWRARSCAILTGISSVRKDDPQLTVRYITVS-RQPMRIVVDSNLETPLQAKLLQNAD 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAA 297
                I T                +I+         DLK ++  L   G+  LLVE G  
Sbjct: 241 --TTWIFTAQTSKEKIHRLEDTGAHIVVLPDLAGKVDLKAMMVKLAELGINELLVEAGPV 298

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
           +  + + + LVD II Y +  ++G           + +   + +         G DV L
Sbjct: 299 LNGALVTAGLVDEIIFYFAPSLLGNSAQAMLALPEIGDLSEKYDLQISDIRKIGMDVRL 357


>gi|253581821|ref|ZP_04859045.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium varium ATCC 27725]
 gi|251836170|gb|EES64707.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium varium ATCC 27725]
          Length = 358

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 120/361 (33%), Positives = 199/361 (55%), Gaps = 13/361 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D ++M  AL  +    G  + NP V  ++VKDG ++G G     G PHAEV ALEEAGE
Sbjct: 1   MDKKYMERALELAALGEGYVNPNPMVGAVVVKDGKIVGEGYHKKYGGPHAEVFALEEAGE 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A GAT YVTLEPCSHYG++PPCA+ II+ GI+R ++   DP+  VSGRG++ ++  GI 
Sbjct: 61  KAEGATIYVTLEPCSHYGKTPPCAKKIIDMGIKRCIIASLDPNPLVSGRGIKMMTDAGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V  +ME E       ++     K  ++ LK  ++ D  I      S  IT  +++ +V 
Sbjct: 121 VVTGIMEKEALELNRVFMKYISTKVPYLFLKCGITLDGKIASRTGNSKWITNELAREKVQ 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR +   I+VGI TVLADDP LT R+      +P R+++DP   + +DSK +       
Sbjct: 181 KLRNKYMGIMVGINTVLADDPSLTARIE--NGRNPYRVVIDPFLDIPIDSKFVNFEDGKS 238

Query: 245 VIIVTEND-DPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHS 301
           ++I + N+ +       +KKN+N+I+ +  D K   +L  +   G+  +L+EGG+ +   
Sbjct: 239 ILITSYNNVEKERISFLKKKNVNVIFLEGIDFKLYDILKKIGEIGIDGVLLEGGSFLISK 298

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN------FMCVRRDYFGSDVCLEYI 355
             +  ++D   ++ +  ++G+     P  +G+  +N         V+ + +G++V +E+ 
Sbjct: 299 AFSEDVIDGGEIFIAPKILGDDKA-IPFIKGFNFENISDGFQLRNVKINNYGNNVSMEFY 357

Query: 356 G 356
            
Sbjct: 358 R 358


>gi|78043574|ref|YP_360307.1| riboflavin biosynthesis protein RibD [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995689|gb|ABB14588.1| riboflavin biosynthesis protein RibD [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 361

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 123/355 (34%), Positives = 183/355 (51%), Gaps = 10/355 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D + M  AL+ ++  +G TS NP V  +IV KDG ++G G     G PHAE +AL+ AGE
Sbjct: 3   DQQLMKRALKLAKRALGRTSPNPVVGAVIVDKDGNIVGEGYHKKAGLPHAEREALKVAGE 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +ARG T YVTLEPC HYGR+PPC   II  GI++VVV V DP+ +VSG+G++ L   GI 
Sbjct: 63  KARGGTMYVTLEPCCHYGRTPPCTDAIIAAGIKKVVVAVRDPNPKVSGKGIEILRNAGIE 122

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V+ ++  E       +          I+LK A++ D  I      S  ++G  S++ VH
Sbjct: 123 VVEGVLAEEAFYLNEKFFKFIKTGLPFISLKWAMTVDGKIATETYDSRWVSGEKSRSFVH 182

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR + DA+LVG  T++ D+P LTCR+   Q  +P RI+L     L     I +      
Sbjct: 183 RLRNEYDAVLVGAKTLIIDNPLLTCRIP--QGRNPYRIVLSGSGNLPEGLNIFQLEKEKN 240

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           ++I      P          I     + R ++K+    L   G+ S+LVEGGA V  S +
Sbjct: 241 ILITASKKLPKHVSNGFGHIITTPLGENRINIKEAFLELSRLGIISILVEGGAVVHASLL 300

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLE 353
            +RL D   ++ +  ++G    P P+ +  +            +   FG DV +E
Sbjct: 301 QNRLADKAYIFIAPKIVGGKNAPGPIGDLKISLMKDALPLAIHKLRRFGEDVFIE 355


>gi|110802102|ref|YP_697858.1| riboflavin biosynthesis protein RibD [Clostridium perfringens
           SM101]
 gi|110682603|gb|ABG85973.1| riboflavin biosynthesis protein RibD [Clostridium perfringens
           SM101]
          Length = 365

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 122/361 (33%), Positives = 184/361 (50%), Gaps = 13/361 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  FM  AL  +R   G  + NP V  +IVK G +IG G   + G  HAE+ A+  + +
Sbjct: 1   MDEFFMKKALELARKGEGYVNPNPLVGAVIVKGGEIIGEGYHEFFGGDHAEINAINSSVK 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
              GAT YVTLEPC HYG++PPC + II+   + VVV   DP+  VSG G++ L + GI 
Sbjct: 61  STEGATIYVTLEPCCHYGKTPPCVEAIIKNKFKTVVVGTLDPNPLVSGNGIKILREAGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   ++E E       +     E R  I LK A++ D  I      S  IT   S+  VH
Sbjct: 121 VKVGVLEKECIRLNEIFNFYIKENRPFIALKWAMTLDGKIATKDFKSKWITNKKSREFVH 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALL 242
            LR +  +I+VGI TVL D+P+L CRLN  +  E    RI+LD   K+ LDS+I+K    
Sbjct: 181 SLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLKIPLDSEILKNQSE 240

Query: 243 APVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
           +  +I T N  D +     + K I +I  +      ++ ++L  L  + + S+L+EGG  
Sbjct: 241 SKTLIFTTNKKDKIKNEKLKDKGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEGGGN 300

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352
           +  SF+ ++ V+ I  + +  V G     +P+E   +        F  V    F +D+ +
Sbjct: 301 LNFSFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGIRNVLDAFEFPEVNLKTFHNDILI 360

Query: 353 E 353
           E
Sbjct: 361 E 361


>gi|168179301|ref|ZP_02613965.1| riboflavin biosynthesis protein RibD [Clostridium botulinum NCTC
           2916]
 gi|182669874|gb|EDT81850.1| riboflavin biosynthesis protein RibD [Clostridium botulinum NCTC
           2916]
          Length = 365

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 117/358 (32%), Positives = 190/358 (53%), Gaps = 15/358 (4%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
            +M  AL+ ++   G  + NP V  ++VK+  +IG G   Y G PHAEV AL EAGE+A+
Sbjct: 6   FYMEKALKLAKRGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGPHAEVYALREAGEKAK 65

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GAT YVTLEPCSHYG++PPCA+ I++ GI + ++ + DP+  V GRG+  L Q GI +V 
Sbjct: 66  GATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVT 125

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            +ME E K     ++    +K+  + LK A + D  I      S  ITG  ++ +VH +R
Sbjct: 126 GIMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATKTGESKWITGEEARYKVHQIR 185

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
                I+VGIGT++ D+P LT R+   +  SP  II+D   ++ L+SKI++T     + I
Sbjct: 186 NDLSGIMVGIGTIIKDNPLLTTRIE--RGRSPKAIIVDSSLRIPLESKILETLNERTIYI 243

Query: 248 VTEN--DDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAH 300
                   P            ++  +  +     L +L+  L   GV S+L+EGG+ +  
Sbjct: 244 AATKKHKSPSKKNVLENLGAKVLEFEENEEGKVPLNELMQYLGSEGVDSILLEGGSTLNF 303

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
           S +   +VD ++ + +  ++G     + +    +E      N   ++ +  G D+ +E
Sbjct: 304 SALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVESLKDIFNLQNLKFEKIGQDILIE 361


>gi|153001671|ref|YP_001367352.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS185]
 gi|151366289|gb|ABS09289.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS185]
          Length = 384

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 133/371 (35%), Positives = 191/371 (51%), Gaps = 22/371 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           +  S  D + MS A++ +R     T  NPSV C+IVKD  ++G G     G PHAEV AL
Sbjct: 5   ISWSVLDTQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHAL 64

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE ARGATAYVTLEPCSHYGR+PPCA  +I  G++RVVV V+DP+ +V+GRG+Q L 
Sbjct: 65  RMAGEHARGATAYVTLEPCSHYGRTPPCAFALINIGVKRVVVAVEDPNPQVAGRGIQMLR 124

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI VD  +   E       ++ R       +T+K+A S D    ++   S  ITG  S
Sbjct: 125 DAGIEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPES 184

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH----------SPMRIILDPHFK 229
           +  V  LR +S A++ GI T+LADDP L  R   L              P+R+ILD   +
Sbjct: 185 RRDVQRLRLRSCALVTGIETILADDPSLNVRYQELGGIKDCVTEAQLLQPLRVILDSRAR 244

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGR 285
           L L +  +  A+++P+++V+    P    A    +++ +          L +LL+ L   
Sbjct: 245 LPLSAACL--AVVSPILLVSTVAYPAKFQAQLPSHVSCLVLPAIAGRVSLPELLSYLGQ- 301

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCV 341
               +LVE GA +A +F+   L D ++LY++  ++G  G        Y         M V
Sbjct: 302 SCNHVLVEAGATLAGAFLAEGLADELVLYQAMKILGGQGRNLLQLPDYQTMAQIPALMLV 361

Query: 342 RRDYFGSDVCL 352
                G D  L
Sbjct: 362 DERKLGPDTRL 372


>gi|257468833|ref|ZP_05632927.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium
           ulcerans ATCC 49185]
 gi|317063083|ref|ZP_07927568.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium ulcerans ATCC 49185]
 gi|313688759|gb|EFS25594.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium ulcerans ATCC 49185]
          Length = 358

 Score =  360 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 120/361 (33%), Positives = 200/361 (55%), Gaps = 13/361 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D ++M  AL  +    G  + NP V  ++VKDG ++G G     G PHAEV ALEEAGE
Sbjct: 1   MDKKYMERALELAALGEGNVNPNPMVGAVVVKDGKILGEGYHRKYGGPHAEVFALEEAGE 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GAT YVTLEPCSHYG++PPCA+ II+ GI+R V+   DP+  VSGRG++ ++  GI 
Sbjct: 61  KAKGATIYVTLEPCSHYGKTPPCAKKIIDMGIKRCVIASLDPNPLVSGRGIKMMTDAGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           ++  +ME E       ++     K  ++ LK  ++ D  I      S  IT  +++ +V 
Sbjct: 121 VITGIMEKEALELNRVFMKYISTKTPYLFLKCGITLDGKIASRTGNSKWITNELAREKVQ 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR +   I+VGI TVLADDP LT R+      +P RI++DP   + LDSK +       
Sbjct: 181 RLRNKYMGIMVGINTVLADDPSLTARIE--NGRNPYRIVIDPFLDIPLDSKFVNFEDGKS 238

Query: 245 VIIVTEND-DPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHS 301
           +++ + N+ +       + KN+N+I+ +  + K   +L  +   G+ ++L+EGG+ +   
Sbjct: 239 ILVTSYNNVEKEKISLLKNKNVNVIFLEGTNFKICDILKKVGETGIDAVLLEGGSFLISR 298

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN------FMCVRRDYFGSDVCLEYI 355
               + +D   ++ +  ++G+G    P  +G+  +N         V+ + +G++V +E+ 
Sbjct: 299 AFAEKAIDGGEIFIAPKILGDGEA-VPFIKGFTCENISDGFQLENVKINNYGNNVSMEFY 357

Query: 356 G 356
            
Sbjct: 358 R 358


>gi|260596783|ref|YP_003209354.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Cronobacter turicensis z3032]
 gi|260215960|emb|CBA28583.1| Riboflavin biosynthesis protein ribD [Cronobacter turicensis z3032]
          Length = 367

 Score =  360 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 125/363 (34%), Positives = 177/363 (48%), Gaps = 18/363 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ +      T  NP V C+IV DG+++G G     G PHAEV AL  AG++
Sbjct: 3   DEFYMARALKLASQGRFTTHPNPRVGCVIVNDGVIVGEGFHLRAGEPHAEVHALRMAGDK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q G+ +
Sbjct: 63  ARGATAYVTLEPCSHHGRTPPCCDALINAGVARVVAAMQDPNPQVAGRGLYRLQQAGVEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M SE +     +L R       I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPFIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
           LRA+S AIL    TVLADDP +T R + L E             P+RI+LD   +++   
Sbjct: 183 LRAESHAILTTSATVLADDPSMTVRWDELGEATQAVYPRENLRQPLRIVLDRQNQVTPAH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           KI+         +     D  +     ++    ++    DL  L+  L  R V SL VE 
Sbjct: 243 KIVNQPGE--TWLARACPDDAVWPEGVEQLPTPVHNGKLDLVLLMMQLGKRQVNSLWVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDV 350
           G  +A + + + LVD +I+Y +  ++G           LE                G D+
Sbjct: 301 GPQLAGALLQAGLVDELIVYMAPKLLGSEARGLFALPGLERLADAPRLEFRDAVQVGPDL 360

Query: 351 CLE 353
            L 
Sbjct: 361 RLR 363


>gi|217972396|ref|YP_002357147.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS223]
 gi|217497531|gb|ACK45724.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS223]
          Length = 384

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 134/371 (36%), Positives = 191/371 (51%), Gaps = 22/371 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           +  S  D + MS A++ +R     T  NPSV C+IVKD  ++G G     G PHAEV AL
Sbjct: 5   ISWSVLDTQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHAL 64

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE ARGATAYVTLEPCSHYGR+PPCA  +I  G++RVVV V+DP+ +V+GRG+Q L 
Sbjct: 65  RMAGEHARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVAGRGIQMLR 124

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI VD  +   E       ++ R       +T+K+A S D    ++   S  ITG  S
Sbjct: 125 DAGIEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPES 184

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH----------SPMRIILDPHFK 229
           +  V  LR +S A++ GI T+LADDP L  R   L              P+R+ILD   +
Sbjct: 185 RRDVQRLRLRSCALVTGIETILADDPSLNVRYQELGGIKDSVTEAQLLQPLRVILDSRAR 244

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGR 285
           L L +  +  A+++P+I+V+    P    A    +++ +          L +LL+ L   
Sbjct: 245 LPLSAACL--AIVSPIILVSTVAYPAEFQAQLPSHVSCLVLPAIAGRVSLPELLSYLGQ- 301

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCV 341
               +LVE GA +A +F+   L D ++LY++  ++G  G        Y         M V
Sbjct: 302 SCNHVLVEAGATLAGAFLAQGLADELVLYQAMKILGGQGRNLLQLPDYQTMAQIPALMLV 361

Query: 342 RRDYFGSDVCL 352
                G D  L
Sbjct: 362 DERKLGPDTRL 372


>gi|126660826|ref|ZP_01731920.1| riboflavin biosynthesis protein [Cyanothece sp. CCY0110]
 gi|126617877|gb|EAZ88652.1| riboflavin biosynthesis protein [Cyanothece sp. CCY0110]
          Length = 364

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 118/356 (33%), Positives = 185/356 (51%), Gaps = 10/356 (2%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D + M   L  +R  +G TS NP V  +IVKDG +IG G     G PHAEV AL EAG
Sbjct: 6   NVDQQMMQRCLTLARQGLGYTSPNPLVGAVIVKDGKIIGEGFHPKAGEPHAEVFALREAG 65

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E+A G T YV LEPC+HYGR+PPC + +I   + RVVV + DP+  VSG+G+  L + GI
Sbjct: 66  EKAVGGTVYVNLEPCNHYGRTPPCTEALISAKVARVVVGMVDPNPLVSGKGIARLQEAGI 125

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   + E+       A+  R +  +    LK A++ D  I  +   S  +TG  S+  V
Sbjct: 126 EVTVGVEEAACLRLNEAFCHRILNNQPFGILKYAMTLDGKISSSTGHSAWVTGTKSRQLV 185

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H +RA  DA++VG  TV  D+P LT  ++ +   +P+R+++  +  L  ++ +    + A
Sbjct: 186 HQIRAGCDAVIVGGNTVRRDNPHLT--IHQVTGVNPLRVVMSRNLHLPEEANLWNVDI-A 242

Query: 244 PVIIVTE-NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           P I+ TE  ++P L    R K + +I        +++ IL  R + S+L E G  +    
Sbjct: 243 PTIVFTEWGNNPSLQTKLRDKGVEVIELSPLTPSQVMDILYERQLCSVLWECGGVLGAEA 302

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
           I  R++  I+ + +  +IG     SP+ +  L+K         V       D+ +E
Sbjct: 303 ITQRVIQKIMAFIAPKIIGGFSAASPVGDLGLDKMSDALPLQNVSFRQVERDILVE 358


>gi|169342987|ref|ZP_02864015.1| riboflavin biosynthesis protein RibD [Clostridium perfringens C
           str. JGS1495]
 gi|169298896|gb|EDS80970.1| riboflavin biosynthesis protein RibD [Clostridium perfringens C
           str. JGS1495]
          Length = 365

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 121/361 (33%), Positives = 186/361 (51%), Gaps = 13/361 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  FM  AL  +R   G  + NP V  +IVKDG +IG+G   + G  HAE+ A+  + +
Sbjct: 1   MDEFFMKKALELARKGEGYVNPNPLVGAVIVKDGEIIGQGYHEFFGGNHAEINAINSSIK 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
              GAT YVTLEPC HYG++PPC + II+   +RVVV   DP+  VSG+ ++ L + GI 
Sbjct: 61  STEGATIYVTLEPCCHYGKTPPCVEAIIKNKFKRVVVGTLDPNPLVSGKSIKILRESGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   ++E E       +     E R  I LK A++ D  I      S  IT   S+  VH
Sbjct: 121 VKVGVLEKECIRLNEIFNFYIKENRPFIALKWAMTLDGKIATKDFKSKWITNKKSREFVH 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALL 242
            LR +  +I+VGI TVL D+P+L CRLN  +  E    RI+LD   ++ LDS+I+K    
Sbjct: 181 SLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKNQSE 240

Query: 243 APVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
           +  +I T N  D +     + K I +I  +      ++ ++L  L  + + S+L+EGG  
Sbjct: 241 SKTLIFTTNKKDKIKNEKLKDKGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEGGGN 300

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352
           +  +F+ ++ V+ I  + +  V G     +P+E   +        F  V    F  D+ +
Sbjct: 301 LNFTFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGIRNVLDAFEFPEVNLKNFDKDILI 360

Query: 353 E 353
           E
Sbjct: 361 E 361


>gi|292487445|ref|YP_003530317.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Erwinia amylovora CFBP1430]
 gi|292898687|ref|YP_003538056.1| riboflavin biosynthesis protein RibD [Erwinia amylovora ATCC 49946]
 gi|291198535|emb|CBJ45643.1| riboflavin biosynthesis protein RibD [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase]
           [Erwinia amylovora ATCC 49946]
 gi|291552864|emb|CBA19909.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Erwinia amylovora CFBP1430]
          Length = 367

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 123/366 (33%), Positives = 182/366 (49%), Gaps = 18/366 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL  +R     T+ NP+V C++V+D  ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEAYMARALELARRGRFTTTPNPNVGCVLVRDDQIVGEGYHMRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           +RGATAYVTLEPCSH+GR+PPC + +I  G++RVV  + DP+ +V+GRGL  L Q GI +
Sbjct: 63  SRGATAYVTLEPCSHHGRTPPCCEALIAAGVKRVVTAMQDPNPQVAGRGLYRLQQAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M  E +     +L R       + LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMPEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPEARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLAD+P LT R + L               P+R+I+D   +++   
Sbjct: 183 LRAQSSAILSTSATVLADNPALTVRHDELDRASLADYPVDLLRQPVRVIVDSQNRVTPRH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           ++I         +     D +       + +   Y D  DL  +L +L  + + SL VE 
Sbjct: 243 RLISQPGE--TWLARTAGDDLDWPDNVSQLMVPRYQDRLDLVAMLMLLGRKQINSLWVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           GA  A + + + +VD +I+Y +  ++G+ G        LE       F        G D+
Sbjct: 301 GAQFAGALLQAGVVDELIVYLAPKLLGDAGRGLCQLPGLEMLASVPVFTFSDIRQVGPDI 360

Query: 351 CLEYIG 356
            L    
Sbjct: 361 RLTLTP 366


>gi|242240315|ref|YP_002988496.1| riboflavin biosynthesis protein RibD [Dickeya dadantii Ech703]
 gi|242132372|gb|ACS86674.1| riboflavin biosynthesis protein RibD [Dickeya dadantii Ech703]
          Length = 370

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 125/373 (33%), Positives = 188/373 (50%), Gaps = 19/373 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M V S D  +M+ AL  +R  +  TS NP+V C+IV+DG V+G G     G PHAEV AL
Sbjct: 1   MSVLS-DEFYMARALELARRGIFTTSPNPNVGCVIVRDGEVVGEGFHQKAGEPHAEVHAL 59

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AG++A+GAT YVTLEPCSH+GR+PPCA  +I  G+ RVV  + DP+ +V+GRGL  L 
Sbjct: 60  RMAGDKAQGATVYVTLEPCSHHGRTPPCADALIAAGVARVVAAMQDPNPQVAGRGLHRLH 119

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           Q GI +   +M    +     +L R      ++ LK+  S D    MA   S  IT   +
Sbjct: 120 QAGIEVCHGVMADAAENINRGFLKRMRTGFPYVQLKMGASVDGRTAMASGESQWITSPQA 179

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228
           +  V   RA+S AIL    TVLADDP L  R   L               P+RII+D   
Sbjct: 180 RQDVQRFRARSSAILSSSATVLADDPSLAVRWQELDADTQRIYPQESLRQPVRIIVDSQS 239

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           +++ + +++         +     D +   +  ++    +Y +  DL  L+ +L  R + 
Sbjct: 240 RVTPEHRLVSQPGS--TWLARPQRDGLAWPSSVEQIDVPLYGEGLDLVALMMLLGKRQIN 297

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344
           S+ VE G  +A + + + +VD +I+Y +  ++G+   P    S +E       F+     
Sbjct: 298 SVWVEAGPRLAGALLQANVVDELIVYIAPRLLGDAARPLCVLSGVETLSQTPEFLIADVC 357

Query: 345 YFGSDVCLEYIGK 357
             G DV L    +
Sbjct: 358 QVGPDVRLTLKPR 370


>gi|187778552|ref|ZP_02995025.1| hypothetical protein CLOSPO_02147 [Clostridium sporogenes ATCC
           15579]
 gi|187772177|gb|EDU35979.1| hypothetical protein CLOSPO_02147 [Clostridium sporogenes ATCC
           15579]
          Length = 364

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 119/358 (33%), Positives = 189/358 (52%), Gaps = 15/358 (4%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
            +M  AL+ ++   G  + NP V  +++KD  +IG G   Y G PHAEV AL EAGE+A+
Sbjct: 6   FYMEKALKLAKKGEGKVNPNPKVGAIVIKDNKIIGEGYHKYFGGPHAEVYALREAGEKAK 65

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GAT YVTLEPCSHYG++PPCA+ I++ GI + V+ + DP+  V GRG+  L Q GI +V 
Sbjct: 66  GATIYVTLEPCSHYGKTPPCAKAIVKAGIAKAVIAMKDPNSLVQGRGIDILKQNGIEVVT 125

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            +ME E K     ++    +K   + LK A + D  I      S  ITG  S+ +VH +R
Sbjct: 126 DIMEKESKELNEVFIKYITKKEPFVVLKTASTLDGKIATKKGESKWITGEESRYRVHQIR 185

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
                I+VGIGT++ D+P LT R+   +  SP  II+D + ++ L+SKI++T     + I
Sbjct: 186 NDLSGIMVGIGTIIKDNPLLTTRIE--EGRSPKAIIVDSNLRIPLESKILETINARSIYI 243

Query: 248 VTENDDPV--LALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAH 300
            T                 + I+  +  +     LKKL+  L    + S+L+EGG+ +  
Sbjct: 244 ATTKKHKDLSKKNDLENLGVKILEFEENEEGKVPLKKLMQYLGEEEIDSILLEGGSTLNF 303

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
           S +   +VD ++ + +  +IG     + +    ++          +  +  G D+ +E
Sbjct: 304 SALKEGIVDKVMCFIAPKIIGGQDSKTMIGGTGVDNLKDMFKLQNLNFEKIGEDILIE 361


>gi|238755138|ref|ZP_04616485.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia ruckeri
           ATCC 29473]
 gi|238706698|gb|EEP99068.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia ruckeri
           ATCC 29473]
          Length = 369

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 129/368 (35%), Positives = 183/368 (49%), Gaps = 20/368 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     TS NP+V C+IV+DG ++G G     G PHAEV AL  AG+ 
Sbjct: 4   DEIYMARAFELARLGRFTTSPNPNVGCVIVRDGKIVGEGYHLRAGEPHAEVHALRMAGDA 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSH+GR+PPCA  ++  GIRRVV  + DP+ +V+GRGL  L Q GI +
Sbjct: 64  ARGATAYVTLEPCSHHGRTPPCADALVAAGIRRVVTAMQDPNPQVAGRGLYQLKQAGITV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 124 EHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMATSLDGRTAMASGESKWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP L  R              L    P RIILD   +++   
Sbjct: 184 FRAQSSAILSTSATVLADDPSLIVRWTELDADTQRIYPELALRQPTRIILDSQNRVTPAH 243

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           ++I+        +   + D         + +   Y +  DL  LL  L  R + S+ VE 
Sbjct: 244 QVIRQPGD--CWLARVDADQQHWPDNVDQLLLPRYGNGVDLVLLLMQLGKRQINSVWVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG-----GIPSPLEEGYLEKNFMCVRRDYFGSD 349
           G  +A + + + +VD +ILY +  ++G+      G+P  ++       F        G D
Sbjct: 302 GPQLAGALLQAGVVDELILYVAPKLLGDNARGLCGLPG-IDRLSQVPEFSFSDVTQVGPD 360

Query: 350 VCLEYIGK 357
           + L    K
Sbjct: 361 LRLRLKPK 368


>gi|160876409|ref|YP_001555725.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS195]
 gi|160861931|gb|ABX50465.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS195]
 gi|315268599|gb|ADT95452.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS678]
          Length = 384

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 131/371 (35%), Positives = 188/371 (50%), Gaps = 22/371 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           +  S  D + MS A++ +R     T  NP V C+IVKD  ++G G     G PHAEV AL
Sbjct: 5   ISWSVLDTQMMSRAIQLARKGFYTTRPNPCVGCVIVKDNQIVGEGYHQKAGEPHAEVHAL 64

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE ARGATAYVTLEPCSHYGR+PPCA  +I  G++RVVV V+DP+ +V GRG+Q L 
Sbjct: 65  RMAGEHARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLR 124

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI VD  +   E       ++ R       +T+K+A S D    ++   S  ITG  S
Sbjct: 125 DAGIEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPES 184

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFK 229
           +  V  LR +S A++ GI T+LADDP L  R   L              P+R+ILD   +
Sbjct: 185 RRDVQRLRLRSCALVTGIETILADDPSLNVRYQELGGLKDSVTEAQLLQPLRVILDSRAR 244

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGR 285
           L L +  +  A+++P+++V+    P    A    +++ +          L +LL+ L   
Sbjct: 245 LPLSAACL--AIVSPILLVSTVAYPAEFQAQLPSHVSCLVLPAIAGRVSLPELLSYLGQ- 301

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCV 341
               +LVE GA +A +F+   L D ++LY++  ++G  G        Y           V
Sbjct: 302 SCNHVLVEAGATLAGAFLAEGLADELVLYQAMKILGGQGRNLLQLPDYQTMAQIPALTLV 361

Query: 342 RRDYFGSDVCL 352
                G D  L
Sbjct: 362 DERKLGPDTRL 372


>gi|319744810|gb|EFV97150.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae ATCC
           13813]
          Length = 369

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 115/356 (32%), Positives = 188/356 (52%), Gaps = 12/356 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M+ AL+ +   +G  + NP V  +IVKD  +I +G     G  HAE QA++ A E+ 
Sbjct: 5   EDYMALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDI 64

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
            G+T YVTLEPC H G+ PPC + +I+ GI++VVV   DP+  VSG+G+  L ++G+ + 
Sbjct: 65  SGSTLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVE 124

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++  E       ++     K+  + LK A++ D  I      S  I+   S+  V  L
Sbjct: 125 VGILREECDALNERFIFHMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKL 184

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R +  AI+VGI TVLAD+P LTCR+   +    +RI+ D   K+ LDS ++K+A   P  
Sbjct: 185 RQKCSAIMVGINTVLADNPRLTCRIPKGEAL--VRIVCDSQLKIPLDSYLVKSAKTIPTW 242

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           I T +D+       ++    +I    +    DLK L+TIL   G+ SLL+EGG+++  S 
Sbjct: 243 IATCSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQDGIDSLLIEGGSSLHFSA 302

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLE 353
           + + +V+ +I++ +  +IG     + +    L+          +      SDV +E
Sbjct: 303 LEAGIVNRLIVFIAPKIIGGLKAKTAISGEGLDWLNQAFRVKDIELSRMDSDVVIE 358


>gi|323141090|ref|ZP_08075995.1| riboflavin biosynthesis protein RibD [Phascolarctobacterium sp. YIT
           12067]
 gi|322414466|gb|EFY05280.1| riboflavin biosynthesis protein RibD [Phascolarctobacterium sp. YIT
           12067]
          Length = 388

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 138/371 (37%), Positives = 200/371 (53%), Gaps = 17/371 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D  +M  AL  +    G TS NP V C+IV  +G ++G G     G PHAEV AL EA +
Sbjct: 17  DEAYMQRALELALQAEGNTSPNPMVGCVIVDAEGNIVGEGYHHKAGEPHAEVNALAEAKQ 76

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            A+GATAYVTLEPC+HYGR+ PC   +   GI +VVV   DP+ +V+G+GL++L  +GI 
Sbjct: 77  MAQGATAYVTLEPCAHYGRTGPCCVALARAGIGKVVVACLDPNPKVAGQGLEYLRLQGIE 136

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V  + E E K     + T   ++R  ITLK A++ D  I  A   S  ITG  ++   H
Sbjct: 137 VVTGVCEKEAKRLNERFFTWITKQRPFITLKYAMTLDGKIATATGDSKWITGEEARTFAH 196

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR Q DA+LVGIGTVL DDPELT RL  ++  +P+R++LD   K+SL + ++    LA 
Sbjct: 197 RLRKQHDAVLVGIGTVLEDDPELTTRL--VRGKNPVRVVLDSSLKISLMAAVLN--PLAD 252

Query: 245 VIIVTENDDPVLALAFRKK--NINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAV 298
            II T  D  ++         N+ ++     D    + +++  L  RG+ SLLVEGG+A+
Sbjct: 253 TIIFTGLDSDIVKAEALAALPNVEVVRLPLADGVLPVAQVVQALAERGIASLLVEGGSAI 312

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
             +  ++ L D +  + +  +IG      P+                V  +  GSDV + 
Sbjct: 313 HGALFDAGLADRVCAFVAPKLIGGAAALPPVGGAGSSLVETGWQLTEVEMEKLGSDVLIT 372

Query: 354 YIGKNLCLQEL 364
            +   L  QEL
Sbjct: 373 GLVPELDKQEL 383


>gi|312171548|emb|CBX79806.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Erwinia amylovora ATCC BAA-2158]
          Length = 367

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 124/366 (33%), Positives = 181/366 (49%), Gaps = 18/366 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL  +R     T+ NP+V C++V+D  ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEAYMARALELARRGRFTTTPNPNVGCVLVRDDQIVGEGYHMRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           +RGATAYVTLEPCSH+GR+PPC + +I  G++RVV  + DP+ +V+GRGL  L Q GI +
Sbjct: 63  SRGATAYVTLEPCSHHGRTPPCCEALIAAGVKRVVTAMQDPNPQVAGRGLYRLQQAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              MM  E +     +L R       + LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGMMMPEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPEARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLAD+P LT R + L               P+R+I+D   +++   
Sbjct: 183 LRAQSSAILSTSATVLADNPALTVRHDELDRASLADYPVDLLRQPVRVIVDSQNRVTPRH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           ++I         +     D +       +     Y D  DL  +L +L  + + SL VE 
Sbjct: 243 RLISQPGE--TWLARTAGDDLDWPDNVSQLTVPRYQDRLDLVAMLMLLGRKQINSLWVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           GA  A + + + +VD +I+Y +  ++G+ G        LE       F        G D+
Sbjct: 301 GAQFAGALLQAGVVDELIVYLAPKLLGDAGRGLCQLPGLEMLASVPVFTFSDIRQVGPDI 360

Query: 351 CLEYIG 356
            L    
Sbjct: 361 RLTLTP 366


>gi|260886861|ref|ZP_05898124.1| riboflavin biosynthesis protein RibD [Selenomonas sputigena ATCC
           35185]
 gi|330839340|ref|YP_004413920.1| riboflavin biosynthesis protein RibD [Selenomonas sputigena ATCC
           35185]
 gi|260863460|gb|EEX77960.1| riboflavin biosynthesis protein RibD [Selenomonas sputigena ATCC
           35185]
 gi|329747104|gb|AEC00461.1| riboflavin biosynthesis protein RibD [Selenomonas sputigena ATCC
           35185]
          Length = 367

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 124/365 (33%), Positives = 192/365 (52%), Gaps = 10/365 (2%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  FM  AL  +    G T+ NP V  +IV++G ++G G     G PHAEV AL  AG+
Sbjct: 3   QDEDFMREALLLAANARGRTAPNPLVGAVIVREGRIVGAGWHRKAGTPHAEVHALAMAGD 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            A GAT YVTLEPCSH+GR+ PCA+ +++ G++RVV  + DP+  V+G+G   L   G+ 
Sbjct: 63  LAHGATVYVTLEPCSHHGRTGPCAEALVKAGVKRVVTAMLDPNPLVAGKGKAMLEAAGVE 122

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   ++  E +    AYL    EK   +TLK A++ D  I  A   S  ITG  ++ +VH
Sbjct: 123 VTVGVLAEEARRLNEAYLKWVTEKLPFVTLKTAMTLDGKIATAAGKSQWITGEAARRRVH 182

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            +R  +DAI+VGIGTVLADDP LT RL      +P+R+I+D   +  L + +++      
Sbjct: 183 EMRDVADAIVVGIGTVLADDPSLTTRLVDGTGRNPVRVIVDSRARTPLAATVVQDGAAKT 242

Query: 245 VIIVTENDDPVLALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           ++ VT         A     + ++     +  DL  L+ +L  R +TS+ VEGG  +  S
Sbjct: 243 LVAVTCAAPEERCAALEAAGVEVVRAGEGERVDLATLMRLLAARDMTSVFVEGGGTLNFS 302

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE-YI 355
            + + LVD I  + +  ++G     +P+E     +         +  +  G+D+ L  Y+
Sbjct: 303 LLAAGLVDKIHAFIAPKIVGGKAALTPVEGAGFAELADAAVLTRLTAEQVGADILLTGYV 362

Query: 356 GKNLC 360
            K   
Sbjct: 363 AKEAR 367


>gi|294784869|ref|ZP_06750157.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_27]
 gi|294486583|gb|EFG33945.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_27]
          Length = 369

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 198/365 (54%), Gaps = 17/365 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D ++M+ A+  ++   G  + NP V  +IVKDG +IG G     G PHAEV AL EAG
Sbjct: 4   NSDEKYMARAIELAKRGTGGVNPNPLVGAVIVKDGKIIGEGWHKKFGGPHAEVWALNEAG 63

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E A+GAT YVTLEPCSH G++PPCA+ IIE GI+R VV   DP+  V+G+G++ +   GI
Sbjct: 64  ENAKGATVYVTLEPCSHQGKTPPCAKRIIEAGIKRCVVACIDPNPLVAGKGMKIIENAGI 123

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V+  ++E E K     +L     K  ++ LK  ++ D  I      S  IT  I++ +V
Sbjct: 124 EVELGVLEKEAKDVNKIFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKV 183

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKT 239
             LR +  AI+VGI TVL D+P L  RL+    G+++ +P R+++DP+ +  +++K +  
Sbjct: 184 QFLRTKFMAIMVGINTVLKDNPSLDSRLDEEKSGIEKRNPFRVVIDPNLESPIEAKFLNF 243

Query: 240 ALLAPVIIVTENDDP--VLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGG 295
                 II+T ND+        ++      I+ + +  K   +L  L    + S+L+EGG
Sbjct: 244 N-DGKAIIITSNDNKGLEKIEKYKNLGTRFIFLEGKIFKMEDILKELGKLEIDSVLLEGG 302

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV------RRDYFGSD 349
           + +  +     ++D+  ++ +  +IG+     P   G+   N   V      + + +G +
Sbjct: 303 SGLISTAFKENIIDAGEIFIAPKIIGDNSA-IPFINGFNFDNMEEVFKLPNPKFNIYGDN 361

Query: 350 VCLEY 354
           + +E+
Sbjct: 362 ISIEF 366


>gi|308174118|ref|YP_003920823.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Bacillus amyloliquefaciens DSM 7]
 gi|307606982|emb|CBI43353.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Bacillus amyloliquefaciens DSM 7]
 gi|328552752|gb|AEB23244.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Bacillus amyloliquefaciens TA208]
 gi|328912449|gb|AEB64045.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Bacillus amyloliquefaciens LL3]
          Length = 371

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 116/362 (32%), Positives = 178/362 (49%), Gaps = 11/362 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            +  +M+ A+  +R   G T  NP V  ++VK+G ++G G     G  HAEV A+  AG 
Sbjct: 1   MEEYYMNTAIELARRGEGQTQPNPLVGAVVVKNGQIVGMGAHLQYGEAHAEVHAINMAGS 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            A+GA  YVTLEPCSHYG++PPCA+ I++ GI+RV + V+DP+  V+G+G+  L   GI 
Sbjct: 61  HAKGADLYVTLEPCSHYGKTPPCAELIMKSGIKRVFIAVEDPNPLVAGKGITMLEAAGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   ++  + +     +L        ++TLK A S D         S  IT   ++    
Sbjct: 121 VKTGLLRQQAEELNKMFLHFMRTGLPYVTLKAAASLDGKTATETGDSKWITSEAARLDAQ 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             R    +ILVG GTV AD+P LTCRL       P+R+ILD    +   + ++ T   AP
Sbjct: 181 QYRKSHQSILVGAGTVKADNPSLTCRLPDA-VKQPVRVILDTKLTVPETANVL-TDGAAP 238

Query: 245 VIIVTENDDPVL---ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
             I T     V     L      +  +  D   + ++L+IL   G+ S+ VEGGA+V  S
Sbjct: 239 TWIFTAAGSDVRKKDRLTALGIKVFTLETDRIHIPEVLSILAENGIMSVYVEGGASVHGS 298

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIG 356
           F+ +   D +  Y +  +IG    PS +     +      +    +    G D+ L  I 
Sbjct: 299 FVKAGCFDELHFYFAPTLIGGTLAPSLISGEGFQSMKDVPHLQFTQITQIGPDIKLTAIP 358

Query: 357 KN 358
           K+
Sbjct: 359 KD 360


>gi|317056285|ref|YP_004104752.1| riboflavin biosynthesis protein RibD [Ruminococcus albus 7]
 gi|315448554|gb|ADU22118.1| riboflavin biosynthesis protein RibD [Ruminococcus albus 7]
          Length = 369

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 119/369 (32%), Positives = 177/369 (47%), Gaps = 16/369 (4%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65
             FM  AL  +   +G  S NP V  +IV+DG +I  G     G  HAE  A  E     
Sbjct: 4   EDFMREALALAEKGMGHVSPNPMVGAVIVRDGNIIASGYHKRYGDLHAERSAFAECDAKD 63

Query: 66  -EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            + RGA  YVTLEPC H+G+ PPC   +IE GI+RV V   DP+  V+G+G   L + GI
Sbjct: 64  IDCRGADMYVTLEPCCHHGKQPPCTDAVIEHGIKRVFVGSSDPNPLVAGKGTAILREHGI 123

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            + + +++ E       +          +TLK A++ D  I      S  ITG  ++  V
Sbjct: 124 EVTEGVLKDECDRLNEIFFKFITTGLPFVTLKYAMTLDGKIACYTGKSQWITGETARKHV 183

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  R    AI+VG+GTVLADDP LTCR+  +    P+RII D H +  LDS I++T+   
Sbjct: 184 HRERLHHAAIMVGVGTVLADDPMLTCRIKNV--RDPLRIICDTHLRTPLDSNIVRTSEKV 241

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299
           P +IV  + D      + K+   ++    +    DL  L+  L    + S+L+EGG  + 
Sbjct: 242 PTLIVCGDADSGRIGEYEKRGCKVLSLPDKNGSTDLSALMAYLGKEKIDSVLIEGGGMLG 301

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEY 354
            S + S +VD ++ Y +  + G     +P+    +            R      D+ +E 
Sbjct: 302 WSALESGIVDKVMAYVAPKIFGGSNAKTPVGGQGVAVPDDAFMLEDRRITELDGDILIEG 361

Query: 355 IGKNLCLQE 363
             K  C Q+
Sbjct: 362 RVKK-CSQD 369


>gi|77413098|ref|ZP_00789299.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae 515]
 gi|77160891|gb|EAO72001.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae 515]
          Length = 369

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 115/356 (32%), Positives = 188/356 (52%), Gaps = 12/356 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M+ AL+ +   +G  + NP V  +IVKD  +I +G     G  HAE QA++ A E+ 
Sbjct: 5   EDYMALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDI 64

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
            G+T YVTLEPC H G+ PPC + +I+ GI++VVV   DP+  VSG+G+  L ++G+ + 
Sbjct: 65  SGSTLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVE 124

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++  E       ++     K+  + LK A++ D  I      S  I+   S+  V  L
Sbjct: 125 VGILREECDALNERFIFHMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKL 184

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R +  AI+VGI TVLAD+P LTCR+   +    +RI+ D   K+ LDS ++K+A   P  
Sbjct: 185 RQKCSAIMVGINTVLADNPRLTCRIPKGEAL--VRIVCDSQLKIPLDSYLVKSAKTIPTW 242

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           I T +D+       ++    +I    +    DLK L+TIL   G+ SLL+EGG+++  S 
Sbjct: 243 IATCSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQDGIDSLLIEGGSSLHFSA 302

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLE 353
           + + +V+ +I++ +  +IG     + +    L+          +      SDV +E
Sbjct: 303 LKAGIVNRLIVFIAPKIIGGLKAKTAISGEGLDWLNQAFRVKDIELSRMDSDVVIE 358


>gi|194336939|ref|YP_002018733.1| riboflavin biosynthesis protein RibD [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309416|gb|ACF44116.1| riboflavin biosynthesis protein RibD [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 366

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 123/359 (34%), Positives = 189/359 (52%), Gaps = 13/359 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  FM  AL  +    G  S NP V  +IV DG +IG G     G PHAEV A+    +
Sbjct: 5   DDLFFMRRALELAVLGAGSVSPNPMVGAVIVCDGEIIGEGYHQQFGGPHAEVHAIASVED 64

Query: 66  EA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           EA    +T YVTLEPCSH+G++PPC+  I+E GI RVV+   DP V+V+G+G+  L   G
Sbjct: 65  EALLHHSTLYVTLEPCSHFGKTPPCSDLIVEKGIPRVVIGCRDPHVKVAGKGIAKLQAAG 124

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I + + ++E+E      A++         + LK+A + D  I  +   S  ITG  S+++
Sbjct: 125 IRVTEGVLEAECIGCNEAFIKSHTTGLPFVCLKLAQTLDGKIATSLGASRWITGEESRSE 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LR+  DA++VG  TV ADD +LT R       +P R++LD   +L L+SKI  +   
Sbjct: 185 VHRLRSIYDAVMVGEATVRADDAQLTVR--NCSGRNPQRVVLDSQLRLPLESKIFGSEAP 242

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298
             V+  T           R++ + +++ D      DL++ L  L  RG+ S+LVEGG+ +
Sbjct: 243 TIVVASTSFSASPKVAQLRERGVTVLFVDEHVGKLDLRQALVELHKRGILSVLVEGGSRL 302

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           + +F+  +LVD I+++ +  + G        P  +       +    R  +FG D+ LE
Sbjct: 303 SAAFVREKLVDKILIFVAPKLFGGDALSAFAPLGVSMPDQAVDLRFGRPHFFGHDLLLE 361


>gi|328956808|ref|YP_004374194.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Carnobacterium sp. 17-4]
 gi|328673132|gb|AEB29178.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Carnobacterium sp. 17-4]
          Length = 355

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 123/357 (34%), Positives = 192/357 (53%), Gaps = 14/357 (3%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATA 72
            AL  +R   G T+ NP V  +IVK G VIG+G     G PHAEV A+  A ++  GAT 
Sbjct: 1   MALDLARKGKGWTTPNPLVGAVIVKGGRVIGQGYHQKYGQPHAEVNAIVSAKKDVTGATL 60

Query: 73  YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMME 131
           YVTLEPCSH+G++PPC+  +I+  I+RVVV   DP+  V+G+G++ L   GI +V  ++E
Sbjct: 61  YVTLEPCSHFGKTPPCSDLLIDKNIKRVVVGTLDPNPLVAGKGIERLRSNGIEVVTGVLE 120

Query: 132 SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191
            E +     ++   V K   + +K A+S D  I      S  I+G  S+ QVH LR +  
Sbjct: 121 EESQKLNEIFIKYIVTKEPFVVMKNAMSLDGKIATVTGESQWISGESSRKQVHSLRHELA 180

Query: 192 AILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251
            I+VGI T++ DDP+LT R   L   +P+RI++D   ++ + SK++     A  I+ T  
Sbjct: 181 GIMVGIETIIKDDPQLTSRT--LNSRNPIRIVVDSQLRIPIASKVLTQQDKAKTIVATTK 238

Query: 252 -DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
             +       ++  I +I    +    DL++L+ ++  +G+ S+L+EGGA +  S +   
Sbjct: 239 RANNEKLETLKQMGIEVIVTKEKYGRVDLQELMKVVGAKGIDSILLEGGATLNFSALEEG 298

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGY---LEKNFMCVRRD--YFGSDVCLE-YIGK 357
           +VD I  Y +  +IG     + +E      L+  F   R      G D+ +E YI K
Sbjct: 299 IVDKIQSYIAPKIIGGKEAKTAVEGAGVHSLKSAFQIDRMTPVMVGEDLFVEGYIVK 355


>gi|326793810|ref|YP_004311630.1| riboflavin biosynthesis protein RibD [Marinomonas mediterranea
           MMB-1]
 gi|326544574|gb|ADZ89794.1| riboflavin biosynthesis protein RibD [Marinomonas mediterranea
           MMB-1]
          Length = 383

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 126/367 (34%), Positives = 197/367 (53%), Gaps = 16/367 (4%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
            +MS A++ ++  +  T  NP V C+IVKD  +IG G  A  G  HAEV AL  A E   
Sbjct: 10  EYMSQAVQLAKKGLYTTHPNPRVGCVIVKDDRIIGEGFHARAGEGHAEVNALASAMESVE 69

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GATAYVTLEPCSH G++PPCA  +I+ GI  VV  + DP+ +V+GRGL  L + G+ ++ 
Sbjct: 70  GATAYVTLEPCSHQGKTPPCADALIKAGIAVVVYGMQDPNPQVAGRGLAKLEKAGVQVIG 129

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++E+E +     +  R  E   +I LK+A+S D    M    S  ITG  ++  V  LR
Sbjct: 130 PVLENECERLNLGFNKRMREGLPYIRLKMAMSLDGRTAMESGESQWITGSAARLDVQRLR 189

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQE-------HSPMRIILDPHFKLSLDSKIIKTA 240
           AQSDAI+ GIG+V+ D+P +T R++   +         P+R+I+D    +  ++KI+K  
Sbjct: 190 AQSDAIVTGIGSVILDNPSMTVRIDSDDQEVDSKSVRQPLRVIMDTALSIPPEAKILKPG 249

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGG 295
             A +  V E+ +     A +K  +NI +         DL + + +L  +G+  +LVE G
Sbjct: 250 KEALMFCVEEDIEQEHFDALKKTGVNIEFAPVGEDGRMDLIECMGLLADQGINEVLVETG 309

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCL 352
           A +A +F+   LVD +++Y +  ++G    P    P++                G+D+ +
Sbjct: 310 AELAGAFLREGLVDELVVYVAPKLLGSDARPLMRLPIDVMKDAVELELESVRSVGNDLKM 369

Query: 353 EYIGKNL 359
            Y  K L
Sbjct: 370 VYFPKYL 376


>gi|319427244|gb|ADV55318.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase, RibD [Shewanella putrefaciens 200]
          Length = 384

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 135/377 (35%), Positives = 198/377 (52%), Gaps = 24/377 (6%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           +  S+ D + MS A++ +R     T  NPSV C+IVKD  +IG G     G PHAEV AL
Sbjct: 5   ITWSALDIQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIIGEGYHQKAGEPHAEVHAL 64

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE ARGATAYVTLEPCSHYGR+PPCA  +I  G++RVVV V+DP+ +V GRG+Q L 
Sbjct: 65  RMAGERARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLR 124

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI VD  +   E       ++ R       +T+K+A S D    ++   S  ITG  S
Sbjct: 125 DAGIEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPES 184

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR---LNGLQEH-------SPMRIILDPHFK 229
           +  V  LR +S A++ GI T+LADDP L  R   L  L++         P+R+ILD   +
Sbjct: 185 RRDVQRLRLRSCALVTGIETILADDPSLNVRYQELGSLKDRVTEAQLLQPLRVILDSRAR 244

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGR 285
           L L +  +  A+++P+++V+    P    A    +++ +     +    L +LL+ L   
Sbjct: 245 LPLSAACL--AIVSPILLVSTVAYPADFQAQLPSHVSCLLLPAIEGRVSLPELLSYLGQ- 301

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMC 340
               +LVE GA +A +F+   L D ++LY++  ++G  G     +P      ++      
Sbjct: 302 SCNHVLVEAGATLAGAFLAEGLADELVLYQAMKILGGHGRNLLQLPDYQTMAHIPA-LTL 360

Query: 341 VRRDYFGSDVCLEYIGK 357
           V     G D  L    K
Sbjct: 361 VDERKLGPDTRLTLSVK 377


>gi|56965745|ref|YP_177479.1| riboflavin biosynthesis protein RibD [Bacillus clausii KSM-K16]
 gi|56911991|dbj|BAD66518.1| riboflavin biosynthesis protein RibD [Bacillus clausii KSM-K16]
          Length = 367

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 122/364 (33%), Positives = 194/364 (53%), Gaps = 16/364 (4%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            R+M  AL  ++   G T  NP V C++VK+G +IG G     G  HAE+ AL  AG EA
Sbjct: 3   ERYMRLALDNAKAMKGQTDPNPLVGCVLVKEGRIIGVGAHLKAGEAHAEINALRMAGSEA 62

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           +G+TAYVTLEPCSH GR+ PCA  ++E G++ V++   DP+  VSG G++ L + G+ + 
Sbjct: 63  KGSTAYVTLEPCSHTGRTGPCAVELVEAGVKEVIIATLDPNPLVSGNGVRILEEGGVHVQ 122

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++E E       +    V +  ++TLK AVS D  I      S  IT   ++  VH L
Sbjct: 123 TGILEKEAVQLNDVFNYSIVNRMPYVTLKAAVSLDGKIAAKSGDSKWITSSEARQDVHRL 182

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R+++ AI+VG+ TVL D+P LT R+      +P+R+I+D H +  +D+ I+ T  LAP  
Sbjct: 183 RSENQAIIVGVDTVLKDNPSLTARI--ANGRNPIRVIVDSHLRTPVDA-IVTTDGLAPTW 239

Query: 247 IVTENDD---PVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVTSLLVEGGAAVAH 300
           I T  +    P       K  + ++        DLK+++  L    ++S L+E G  +  
Sbjct: 240 IFTAAEPRHLPEKQERLEKAGVRLVQTSGTTKVDLKEMMAYLYKESISSALLEAGGTLNA 299

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVCLE-Y 354
           +F+ ++LV  +I+Y +  +IG    P+ LE   ++K    +          G D+ L  Y
Sbjct: 300 AFLEAQLVQKLIVYVAPKLIGGALAPTFLEGSGIDKMADALPLAFSEATQIGPDLKLTAY 359

Query: 355 IGKN 358
           +  +
Sbjct: 360 VVSD 363


>gi|229145969|ref|ZP_04274348.1| Riboflavin biosynthesis protein [Bacillus cereus BDRD-ST24]
 gi|228637577|gb|EEK94028.1| Riboflavin biosynthesis protein [Bacillus cereus BDRD-ST24]
          Length = 348

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 120/341 (35%), Positives = 184/341 (53%), Gaps = 10/341 (2%)

Query: 22  VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
            G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARGAT YVTLEPCSH
Sbjct: 2   KGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGATIYVTLEPCSH 61

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140
           +GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  + E E K     
Sbjct: 62  HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEV 121

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R ++ AILVG  TV
Sbjct: 122 FNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRNENAAILVGANTV 181

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
             D+P LT R+      +P+RIILD   ++ +++ ++        I  T N       A 
Sbjct: 182 QKDNPSLTTRIP--NGRNPIRIILDSTLRIPMEANVVTDGEAPTWIFTTSNHAAKKKKAL 239

Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
               + +         +L ++L +L  +GV+SLL+EGG  V  SFI ++L+D +ILY + 
Sbjct: 240 ENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIENKLMDKLILYVAP 299

Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
            +IG    PS +    + K    +       D+    +GK+
Sbjct: 300 KIIGGRLAPSFVGGTGITKMQDAIEFK----DISFTQVGKD 336


>gi|319404317|emb|CBI77910.1| Riboflavin biosynthesis protein ribD [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 374

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 157/374 (41%), Positives = 223/374 (59%), Gaps = 12/374 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAE 56
           M  +  D RFM+ A+R +  H+GLT  NPSV  LIV++      ++G GVTA  G PHAE
Sbjct: 1   MNKAEQDKRFMAVAIRLAERHIGLTGENPSVGALIVQNKGAGASIVGYGVTAIQGRPHAE 60

Query: 57  VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           VQAL  AG  A GATAYVTLEPCSHYG + PC   +I  GI RVV+ + DPD RV G G+
Sbjct: 61  VQALLMAGPLACGATAYVTLEPCSHYGETSPCVNALINSGITRVVIALSDPDQRVYGCGI 120

Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
             L   GI +V+ ++  E    L AYL  +  +R  +TLK+A+S DN IG  G GSV ++
Sbjct: 121 ALLRAAGIEVVEGVLAEEAFETLSAYLCVKKLQRCEVTLKMAISADNGIGKKGQGSVRVS 180

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
           G IS+ Q H+LRAQ++ I+VGIGT+LADDP+L CRL GL+  SP+R+ILD   ++ LD+K
Sbjct: 181 GEISRTQTHILRAQNNVIMVGIGTILADDPQLDCRLPGLEMRSPIRVILDKDLRIPLDAK 240

Query: 236 IIKTALLAPVIIVTENDD--PVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTS 289
           +++TA   P  ++           +A  +  I I   D  +       +L +L  R + S
Sbjct: 241 VVQTAANIPTWVICSTGSLKKRKKIALEQCGITICSVDTNNNLLSPFAILQLLYQRKINS 300

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           +L+EGGA     F+++  VD +I + + I++G+  I +P  + YL + F  V     G+D
Sbjct: 301 VLLEGGAKTGKIFLDAGCVDCLICFYAPIILGKDRIKAPHFQSYLSE-FNKVEIRMLGND 359

Query: 350 VCLEYIGKNLCLQE 363
              ++  K LC Q 
Sbjct: 360 RLYKWRRKILCSQG 373


>gi|332977386|gb|EGK14164.1| riboflavin biosynthesis protein RibD [Desmospora sp. 8437]
          Length = 368

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 117/368 (31%), Positives = 192/368 (52%), Gaps = 10/368 (2%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M ++  D R+M  ALR +    G TS NP V  ++VKDG ++G G     G PHAEV AL
Sbjct: 3   MNLTE-DERWMELALRLAEAARGQTSPNPLVGAVVVKDGQLLGSGAHLKAGTPHAEVHAL 61

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           E+AG+ A+G+T YVTLEPC+HYGR+PPC +  I  G+RRVVV   DPD  VSG+G+Q L 
Sbjct: 62  EQAGKSAKGSTLYVTLEPCNHYGRTPPCTERTISSGVRRVVVGSTDPDPLVSGKGVQRLR 121

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + G+ +   ++         AY   +      +TLK AV+ D     +   S  +TG  +
Sbjct: 122 EAGLSVKTGVLADRCTRLNEAYFHHRRTGFPFVTLKAAVTLDGKTATSDGDSRWVTGEAA 181

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           + +VH LR Q DA+LVG GT L D P+LT RL G    +P+R+++D   ++ L+S +   
Sbjct: 182 REEVHRLRHQYDAVLVGSGTALHDRPQLTVRLPGG-GKNPLRVVVDSRLRMPLNSPLADV 240

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGA 296
              +  +  T+  D     A   + + +          L+ +   L   G+ S+L E G 
Sbjct: 241 ESASTWVFCTDEADSGREAALTARGVRVYRTGAGPRVKLESVFRRLGREGIVSVLTESGG 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
            +  S +    V+ ++ + +  ++G     + +    +++    ++      DV ++  G
Sbjct: 301 ELNASLLREGWVNKVMFFIAPKILGGRDSLTAVGGTTVDQ----MKDALLLEDVSVDLFG 356

Query: 357 KNLCLQEL 364
           +++C+  +
Sbjct: 357 RDICVTGI 364


>gi|301156580|emb|CBW16051.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Haemophilus parainfluenzae T3T1]
          Length = 376

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 133/379 (35%), Positives = 198/379 (52%), Gaps = 23/379 (6%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             S  D +FM  AL  +      T+ NPSV C++VK+G ++G+G     G PHAE  AL 
Sbjct: 4   TFSPDDVKFMQLALELAAKGQYTTTPNPSVGCVLVKNGEIVGKGFHFKTGQPHAERVALA 63

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +AGE+A+GATAYVTLEPCSHYGR+PPCA  +IE G+ RVV  + DP+ +V+G+GL+ L+ 
Sbjct: 64  DAGEKAKGATAYVTLEPCSHYGRTPPCALGLIEAGVSRVVAAMADPNPQVAGKGLKMLAD 123

Query: 122 KGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI     ++  + +     +L R    + ++ LK+A+S D    MA   S  ITG  ++
Sbjct: 124 AGIPSAVNLLNEQAEALNKGFLKRMRTGKPYVQLKLAMSLDGRTAMASGESKWITGEAAR 183

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFK 229
             V  +RA++ A+L    TVLADDP L  R N   +             P+RIILD   +
Sbjct: 184 ADVQKMRAKATALLSTSATVLADDPSLNVRWNQFPDDLKAEYAEDTVRQPIRIILDSKNR 243

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
           +    ++  T   +PV +V     P     F      I+  +  D   L+T L  R V S
Sbjct: 244 VQPSHQLFHT--HSPVWLV--GSIPRDMSVFPDFCEQILLPENYDFDLLMTELGKRQVNS 299

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRD 344
           + VE GA +A S I    VD +I+Y +  ++G+       +P  LE+      +     +
Sbjct: 300 VWVEAGANLAGSLIEQHAVDELIIYVAPKLLGDNARGLCQLPH-LEKLADVPLWQLQECE 358

Query: 345 YFGSDVCLEYIGKNLCLQE 363
             G D+ L Y+  NL ++E
Sbjct: 359 RIGDDLKLSYLP-NLLIKE 376


>gi|309778325|ref|ZP_07673252.1| riboflavin biosynthesis protein RibD [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308913921|gb|EFP59734.1| riboflavin biosynthesis protein RibD [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 366

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 124/367 (33%), Positives = 184/367 (50%), Gaps = 13/367 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A++ ++   G  + NP V  +IVKD  +IG+G     G  HAE  AL+   E 
Sbjct: 3   DTEYMKLAIKLAKKGAGYVNPNPMVGAVIVKDNRIIGQGYHEIFGGLHAERNALKNCRES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GAT YVTLEPC HYG++PPC + II+ GI RVVV   D +  VSG+G++ L +  I +
Sbjct: 63  PVGATLYVTLEPCCHYGKTPPCTEAIIKSGITRVVVGTLDCNPIVSGKGVKVLEENNIQV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++E E +  +  +         ++ +K A++ D  I      S  I+G  ++ QVH 
Sbjct: 123 VIGILEMECQQLIKVFRKYVTRHIPYVFMKYAMTMDGKIATYTNQSKWISGEKARKQVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R +  AI+VG+ TV+ DDP LTCRL      +P+RI+ D   +  + SKIIKTA     
Sbjct: 183 FRHKVTAIMVGVNTVIQDDPLLTCRLE--NGENPIRIVCDTDLRTPITSKIIKTANDIKT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I T + D      +RK    IIY   +    DL  L+  L    + SLL+EGG A+  S
Sbjct: 241 YIATSSIDESKIALYRKCGCEIIYTKKKGNHIDLMNLMQCLGNMQIDSLLLEGGNAMNWS 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIG 356
            +  ++VD + +Y +  + G     SP+    +                 G+D  +E   
Sbjct: 301 ALEQQIVDEVQIYIAPKIFGGS-AKSPVSGQGVAFPNDAIMLKPYAFSQVGNDYFIESEV 359

Query: 357 KNLCLQE 363
              CLQE
Sbjct: 360 IYPCLQE 366


>gi|169830807|ref|YP_001716789.1| riboflavin biosynthesis protein RibD [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637651|gb|ACA59157.1| riboflavin biosynthesis protein RibD [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 372

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 129/361 (35%), Positives = 194/361 (53%), Gaps = 11/361 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M  AL  +    G TS NP V  ++V+DG ++GRG  A  G PHAE+ AL +AGE
Sbjct: 1   MDQEYMRMALDLAVRARGRTSPNPLVGAVVVRDGEIVGRGYHARAGLPHAEIVALAQAGE 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            ARG+T YV+LEPC H+GR+ PC + +I  G+RRVV  + DP+ +V+GRG+  L + G+ 
Sbjct: 61  AARGSTLYVSLEPCCHFGRTGPCTEAVIAAGVRRVVTAMRDPNPKVAGRGIARLREAGVE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           + + ++  E       ++      R  + LK+AVS D  I      S  ITG  ++   H
Sbjct: 121 VTEDVLRDEAARLNEIFIKYITTGRPFVALKVAVSLDGKIATRTGDSRWITGGPAREYAH 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR   DA+LVG GTV+ DDP LT RL G     P+RI+LD   ++   S+++     AP
Sbjct: 181 RLRDTYDALLVGRGTVVKDDPSLTTRLPGG-GRDPVRIVLDSLARIPESSRVLSGESTAP 239

Query: 245 VIIVTENDDPVLALA-FRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
           VI+      P   +A    + + ++ C      DL+ LL  L  R +TS++VEGGA V  
Sbjct: 240 VIVAVTGQAPRTRVAGLESRGVQVVRCGPGPAVDLEVLLRELAAREITSVMVEGGATVHA 299

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355
           SF+ +R VD +  + +  ++G    P  +    + +         VRR   G+D+C+E  
Sbjct: 300 SFLEARFVDKLHWFVAPKIVGGVEAPGAVAGRGVGRISEAVGLERVRRIELGNDLCIEGY 359

Query: 356 G 356
            
Sbjct: 360 P 360


>gi|220929424|ref|YP_002506333.1| riboflavin biosynthesis protein RibD [Clostridium cellulolyticum
           H10]
 gi|219999752|gb|ACL76353.1| riboflavin biosynthesis protein RibD [Clostridium cellulolyticum
           H10]
          Length = 367

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 109/365 (29%), Positives = 187/365 (51%), Gaps = 11/365 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           +    +M   L  ++   G T+ NP V  +I K+G +I  G     GC HAEV A   A 
Sbjct: 2   NIHEFYMKRTLEIAKEGWGRTNPNPLVGAVIAKNGKIISEGFHEALGCAHAEVCAFSNAP 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            +  GAT YV LEPCSHYGR+PPC + II+ GI+ VVV + DP+ +VSG+G+Q L    I
Sbjct: 62  TDISGATLYVNLEPCSHYGRTPPCVKAIIDSGIKEVVVAMVDPNPKVSGKGIQMLKDANI 121

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            ++  ++E E K     ++    ++   + +K A++ D  I      S  I+G  S+  V
Sbjct: 122 NVIVGVLEEEAKKLNEIFIHYITKRLPFVIMKTAMTLDGKIASVTGDSKWISGEYSREYV 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H +R +  +I+VG+ TV+ D+P LT R    +   P+RI++D   ++ ++S++I++   A
Sbjct: 182 HAIRNRVSSIMVGVNTVINDNPSLTARPISGKGIDPVRIVVDSSGRIPIESRVIQSDSEA 241

Query: 244 PVIIVTEND-DPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAV 298
            +I+ T              + + II         +L++L+  L    + S+L+EGG  +
Sbjct: 242 GLILATTEKIHKDKETQLLSRGVRIIKTAPKNGKVNLRELMEELYKLEIDSVLLEGGGTL 301

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
             S + + +V+ ++ + S  +IG     +P+    +EK         +R + F  DV +E
Sbjct: 302 NFSALEAGIVNKVMTFISPKIIGGSSAVTPVGGKGIEKMKDAIALSDIRVERFDRDVLIE 361

Query: 354 YIGKN 358
               +
Sbjct: 362 GYVAD 366


>gi|253576364|ref|ZP_04853694.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251844257|gb|EES72275.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 373

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 123/362 (33%), Positives = 193/362 (53%), Gaps = 9/362 (2%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL  +    G T TNP V  ++VKDG ++G G     G PHAEV AL  AG 
Sbjct: 5   DDEYYMALALDMAERAQGQTGTNPVVGAVVVKDGALVGLGTHLKRGTPHAEVHALNMAGS 64

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +A G+T YVTLEPCSH+G +PPCA+ +I   ++RVVV  +DP+  V+G+G++ L   GI 
Sbjct: 65  QAEGSTVYVTLEPCSHHGLTPPCAERLIHEKVQRVVVACEDPNPLVAGKGIELLRAAGIE 124

Query: 126 VDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V+  +  E  +     ++        ++T+K A + D  +      S  I+   ++  VH
Sbjct: 125 VEVGVLRERALKLNRRFIKFITTGMPYVTIKSASTLDGKLASRTGDSKWISNEGAREIVH 184

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            +R +  AI+VG  T+LADDP+LT RL+ +   SP+RII D   ++   +++++      
Sbjct: 185 TMRHRHQAIMVGASTILADDPQLTTRLS-VPGLSPIRIIADSTLRIPETAQVLRDGQAPT 243

Query: 245 VIIVTENDDPVLALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            I+ TE  DP  A         ++ C      DL+  L  L  RG++S+LVEGG  +  S
Sbjct: 244 WIVTTEQADPDKAARLIHLGAEVLRCGSGPQVDLRNALVQLGQRGISSVLVEGGGRLNGS 303

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
            +  +LVD I+L+ +  +IG    PS          +  +R      D+ +E IG N+C+
Sbjct: 304 LLEQQLVDEIVLFLAPKLIGGAEAPSSFSFAG----YDLMRDAVTLRDMEVEQIGDNVCI 359

Query: 362 QE 363
           + 
Sbjct: 360 RG 361


>gi|25010822|ref|NP_735217.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
           NEM316]
 gi|23095201|emb|CAD46411.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 369

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 115/356 (32%), Positives = 190/356 (53%), Gaps = 12/356 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M+ AL+ +   +G  + NP V  +IVKD  +I +G     G  HAE QA++ A E+ 
Sbjct: 5   EDYMALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDI 64

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
            G+T YVTLEPC H G+ PPC + +I+ GI++VVV   DP+  VSG+G+  L ++ + + 
Sbjct: 65  SGSTLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKECLNVE 124

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++  E       ++     K+  + LK A++ D  I      S  I+   S+  V  L
Sbjct: 125 VGILREECDALNERFIFHMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKL 184

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R +  AI+VGI TVLAD+P LTCR+   +    +RI+ D   K+ LDS ++K+A   P  
Sbjct: 185 RQKCSAIMVGINTVLADNPRLTCRIPKGEAL--VRIVCDSQLKIPLDSYLVKSAKTIPTW 242

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           I T +D+       ++    +I    +    DLK L+TIL   G+ SLL+EGG+++  S 
Sbjct: 243 IATCSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQEGIDSLLIEGGSSLHFSA 302

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE---KNFMC--VRRDYFGSDVCLE 353
           + + +V+ +I++ +  +IG     + +    L+   ++F    +      SDV +E
Sbjct: 303 LKAGIVNRLIVFIAPKIIGGLKAKTAISGEGLDWLNQDFRVKDIELSRMDSDVVIE 358


>gi|81299014|ref|YP_399222.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Synechococcus elongatus PCC 7942]
 gi|81167895|gb|ABB56235.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Synechococcus elongatus PCC 7942]
          Length = 368

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 110/367 (29%), Positives = 190/367 (51%), Gaps = 8/367 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S  D ++M   L  +    G T+ NP V C+IV+   ++G G     G PHAEV AL +
Sbjct: 1   MSDRDRQYMQRCLELAAQAAGQTAPNPMVGCIIVQGEEIVGEGFHPAAGQPHAEVFALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ ARGAT YV LEPC+HYGR+PPC++ ++  G++RVVV + DPD RV+G G+  L Q 
Sbjct: 61  AGDRARGATLYVNLEPCNHYGRTPPCSEAVVAAGLKRVVVGMVDPDPRVAGGGIARLQQA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   + ++  +    A++ R  ++R    LK A++ D  I  +   S  ++   S+ 
Sbjct: 121 GIEVTVGVEQAACEQMNEAFVWRVTQRRPFGILKYAMTLDGRIAASTGHSAWVSSPESRR 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           QVH LR+Q DA++VG  TV  D+P LTC    + +  P+R+++     L L++ + +T +
Sbjct: 181 QVHSLRSQVDAVIVGGNTVRLDNPRLTCH--DISDRHPLRVVMSRRLDLPLEANLWQTDI 238

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
              ++   E  D         + + ++        ++   L  RG+++LL E G  +A +
Sbjct: 239 APTLVFTEETADRDRWRKLEDQGVEVVVRSPLTPSEVSAELFNRGLSTLLWECGGTLAAA 298

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLEYIG 356
            +    +  ++ + +  +IG     SP+ +  L +    ++ +       G D+C     
Sbjct: 299 ALREGQIQKLLAFIAPKLIGGPPGYSPVGDLGLLRMDQALKVERSQWQAIGPDLCWTAYL 358

Query: 357 KNLCLQE 363
             +  QE
Sbjct: 359 DLVSGQE 365


>gi|134105070|pdb|2O7P|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In
           Complex With The Oxidised Nadp+ Cofactor In The Active
           Site Of The Reductase Domain
 gi|134105071|pdb|2O7P|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli In
           Complex With The Oxidised Nadp+ Cofactor In The Active
           Site Of The Reductase Domain
          Length = 380

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 126/367 (34%), Positives = 181/367 (49%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  + + AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 7   QDEYYXARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRXAGE 66

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV    DP+ +V+GRGL  L Q GI 
Sbjct: 67  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASXQDPNPQVAGRGLYRLQQAGID 126

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +  SE +     +L R      +I LK+  S D     A   S  IT   ++  V 
Sbjct: 127 VSHGLXXSEAEQLNKGFLKRXRTGFPYIQLKLGASLDGRTAXASGESQWITSPQARRDVQ 186

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
           LLRAQS AIL    TVLADDP LT R + L E             P+RI++D   +++  
Sbjct: 187 LLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPV 246

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             +D        +  +   +    DL  L   L  + + S+ VE
Sbjct: 247 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLXXQLGKQQINSIWVE 304

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 305 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 364

Query: 350 VCLEYIG 356
           VCL  +G
Sbjct: 365 VCLHLVG 371


>gi|51246637|ref|YP_066521.1| riboflavin biosynthesis protein (RibD) [Desulfotalea psychrophila
           LSv54]
 gi|50877674|emb|CAG37514.1| probable riboflavin biosynthesis protein (RibD) [Desulfotalea
           psychrophila LSv54]
          Length = 401

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 128/359 (35%), Positives = 190/359 (52%), Gaps = 10/359 (2%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D ++M  AL  +R   G TS NP V  +IV DG V+GRG     G PHAEV AL +AG
Sbjct: 37  ELDQKYMLLALAEARRGQGRTSPNPCVGAIIVGDGSVVGRGYHKKAGTPHAEVHALRDAG 96

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E+A GATAYVTLEPCSH GR+PPC   + + G+ RVVV + DP+  V+GRG+Q+L   GI
Sbjct: 97  EKAAGATAYVTLEPCSHTGRTPPCCVALAKAGVLRVVVGMTDPNPLVNGRGVQYLRDHGI 156

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   + E++ +     ++ +       + +K  +S D  +         ITG  S   V
Sbjct: 157 EVSTGICEADCREINRPFIKKITTGTPWMIMKAGISLDGRMNYKEGEPGWITGPESGALV 216

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H LR   DAI+VG GTV+ D+P LT RL G     P+ +ILD   K   D+ +   A   
Sbjct: 217 HQLRDSVDAIMVGSGTVMIDNPSLTTRLPGGGGRDPVAVILDSQLKTDPDAHVYSAASGR 276

Query: 244 PVIIVTEND-DPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAV 298
            V++  ++D D      F ++ + ++      +  DL +++ +L  R + S+LVEGGA +
Sbjct: 277 SVLVFCQHDVDEGRKEVFAERGVIVLPVSSLPEGLDLGEIVAVLGERDICSVLVEGGAQL 336

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLE 353
               +  RL D + L+++ +  G+GG+      PL           VRR   G+ + LE
Sbjct: 337 HGQLLQKRLYDYLYLFQAPLFAGDGGVSLVTGCPLAGREDAIALRGVRRSVLGAHLLLE 395


>gi|229128665|ref|ZP_04257643.1| Riboflavin biosynthesis protein [Bacillus cereus BDRD-Cer4]
 gi|228654858|gb|EEL10718.1| Riboflavin biosynthesis protein [Bacillus cereus BDRD-Cer4]
          Length = 348

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 122/341 (35%), Positives = 185/341 (54%), Gaps = 10/341 (2%)

Query: 22  VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
            G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ RGAT YVTLEPCSH
Sbjct: 2   KGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQVRGATIYVTLEPCSH 61

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140
           +GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  + E E K     
Sbjct: 62  HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEV 121

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R ++ AILVG  TV
Sbjct: 122 FNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRNENAAILVGANTV 181

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
             D+P LT R+      +P+RIILD   ++ +++ ++        I  T N      +A 
Sbjct: 182 QKDNPSLTTRIP--NGRNPIRIILDSTLRIPMEANVVTDGEAPTWIFTTSNHAAKKKIAL 239

Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
               + +         +L ++L +L  +GV+SLLVEGG  V  SFI ++L+D +ILY + 
Sbjct: 240 ENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLVEGGGEVNASFIENKLMDKLILYVAP 299

Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
            +IG    PS +E   + K    +       DV    +GK+
Sbjct: 300 KIIGGRLAPSFVEGTGITKMQDAIEFK----DVSFTQVGKD 336


>gi|307129900|ref|YP_003881916.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Dickeya dadantii 3937]
 gi|306527429|gb|ADM97359.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Dickeya dadantii 3937]
          Length = 370

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 120/362 (33%), Positives = 180/362 (49%), Gaps = 18/362 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL  +R     TS NP+V C+IV+D  ++G G     G PHAEV AL  AG++
Sbjct: 6   DEFYMARALELARRGRFTTSPNPNVGCVIVRDDEIVGEGYHQKAGEPHAEVHALRMAGDK 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+ +V+GRGL  L Q GI +
Sbjct: 66  ARGATAYVTLEPCSHHGRTPPCADALLAAGVARVVAAMQDPNPQVAGRGLHRLQQAGIEV 125

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++  + +     +L R      ++ LK+  S D    MA   S  IT   S+  V  
Sbjct: 126 RHSVLMEQAEKINRGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSQQSRQDVQR 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP LT R + L               P+R+I+D   +++   
Sbjct: 186 FRAQSSAILSSSATVLADDPSLTVRWSELDADTQRFYPESAVRQPVRVIVDSQSRVTPQH 245

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           ++I         +     D        ++    ++    DL  L+  L  R + ++ VE 
Sbjct: 246 RLISQPGQ--TWLARSRQDGQPWPDGVEQLDMPLHGGGIDLVALMMTLGKRQINTVWVEA 303

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           G  +A + + + +VD +I+Y +  ++G+   P      LE+      F        G D+
Sbjct: 304 GPRLAGALLQAGVVDELIVYLAPKLLGDAARPLCVLPGLEQLSQAPAFAMTDVCQVGPDL 363

Query: 351 CL 352
            L
Sbjct: 364 RL 365


>gi|257063444|ref|YP_003143116.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Slackia heliotrinireducens DSM 20476]
 gi|256791097|gb|ACV21767.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Slackia heliotrinireducens DSM 20476]
          Length = 371

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 122/366 (33%), Positives = 180/366 (49%), Gaps = 16/366 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D + M  A+  +R   G T+ NP V  +IVKDG VIG G     G  HAE  AL    
Sbjct: 2   TADEKMMRRAIELARTAAGWTNPNPLVGAVIVKDGRVIGEGCHERYGDLHAERNALASCT 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E  +GAT YVTLEPCSH G+ PPCA  ++E GI RVVV   DP+  VSGRG+  L   GI
Sbjct: 62  ESPQGATMYVTLEPCSHTGKQPPCADALVEAGIARVVVGSRDPNPLVSGRGIARLRAAGI 121

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            + +  +  E       +      K  ++  K A++ D  I  A   +  ++   S+   
Sbjct: 122 QVEEDFLRQECDGINPVFFHFITTKTPYVVAKWAMTADGKIATATRDARWVSCEASRADT 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H LR +   I+VG+ TVLADDP L  R  G+  + P+RI+ D   ++ LDS ++++A   
Sbjct: 182 HELRHRLAGIMVGVNTVLADDPMLNAR-RGVPSNQPLRIVCDSSLRIPLDSALVRSATEV 240

Query: 244 PVIIVT-----ENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEG 294
           PV++       + +    A+  R   ++++         DL  L+  L   GV S+LVEG
Sbjct: 241 PVLVACACNIDQGERLDKAIRLRAAGVDVVSLPGADGKVDLAALMAHLGESGVDSVLVEG 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSD 349
           G  +  +   S LVD +++Y +  V G    P+P+           +     + D  G D
Sbjct: 301 GGTLHANMFKSGLVDEVVVYLAPKVCGGTSAPTPVGGAGAALMADALQLGKPQVDIVGDD 360

Query: 350 VCLEYI 355
           V L Y 
Sbjct: 361 VRLTYR 366


>gi|256846007|ref|ZP_05551465.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_36A2]
 gi|256719566|gb|EEU33121.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_36A2]
          Length = 369

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 118/364 (32%), Positives = 197/364 (54%), Gaps = 17/364 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D ++M+ A+  ++  +G  + NP V  +IVKDG +IG G     G PHAEV AL EAGE
Sbjct: 5   LDEKYMARAIELAKRGIGGVNPNPLVGAVIVKDGKIIGEGWHKKFGGPHAEVWALNEAGE 64

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            A GAT YVTLEPCSH G++PPCA+ I+E GI+R VV   DP+  V+G+G++ +   GI 
Sbjct: 65  NAEGATIYVTLEPCSHQGKTPPCAKRIVEVGIKRCVVACIDPNPLVAGKGIKIMEDAGIE 124

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V+  ++E E K     +L     K  ++ LK  ++ D  I      S  IT  I++ +V 
Sbjct: 125 VELGVLEKEAKDVNKIFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKVQ 184

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            LR +  AI+VGI TVL D+P L  RL+    G+++ +P R+++DP+ +  +++K +   
Sbjct: 185 FLRTKFMAIMVGINTVLKDNPSLDSRLDEEKSGIEKRNPFRVVIDPNLESPIEAKFLNFN 244

Query: 241 LLAPVIIVTENDDP--VLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGA 296
                II+T ND+        ++      I+ + +  K   +L  L    + S+L+EGG+
Sbjct: 245 -DGKAIIITSNDNKGLEKIEKYKNLGTRFIFLEGKIFKMEDILKELGKLEIDSVLLEGGS 303

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV------RRDYFGSDV 350
            +  +     ++D+  ++ +  +IG+     P   G+   N   V      + + +G ++
Sbjct: 304 GLISTAFKENIIDAGEIFIAPKIIGDNSA-IPFINGFNFGNMEEVFKLPNPKFNIYGDNI 362

Query: 351 CLEY 354
            +E+
Sbjct: 363 SIEF 366


>gi|312143490|ref|YP_003994936.1| riboflavin biosynthesis protein RibD [Halanaerobium sp.
           'sapolanicus']
 gi|311904141|gb|ADQ14582.1| riboflavin biosynthesis protein RibD [Halanaerobium sp.
           'sapolanicus']
          Length = 381

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 129/371 (34%), Positives = 195/371 (52%), Gaps = 20/371 (5%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             S  D R+M+ AL  ++   G  S NP V  ++VK+G +IG G   + G PHAEV AL+
Sbjct: 4   KFSITDIRYMARALEIAKKGEGSASPNPMVGAVLVKNGEIIGEGYHKFYGGPHAEVYALK 63

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           EAG+ A  A  Y+TLEPCSHYG++PPCA  +I+ GI+R V+ + DP+  VSGRG++ L +
Sbjct: 64  EAGQNANNADIYLTLEPCSHYGKTPPCADKLIKSGIKRAVIAMVDPNPEVSGRGIELLKE 123

Query: 122 KGIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI V+  + +E        +L        ++ LK A + D  I  +   S  IT   ++
Sbjct: 124 AGIEVELGLMAEKAKDLNEVFLKYITSDYPYVYLKKAQTLDGFIASSTGHSKWITNEKAR 183

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            + H LR + DAI+VGIGTVLADDP LT RL        +R+ILDP   + LD+KII   
Sbjct: 184 LEGHKLRHKVDAIMVGIGTVLADDPSLTTRLEEQGGIDSLRVILDPELDMPLDAKIINQE 243

Query: 241 LLAPVIIVTENDD---------PVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRG 286
             A  +++                      K N++II          +L  +L  L    
Sbjct: 244 STASTLLIASEASLESNSAALMEKKEKLLAKNNVDIIAVPLEEEGFLNLDFILRQLHDLN 303

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEG----YLEKNFMCV 341
           ++S+L+EGGA +++SF+N  L+D    + +  +  G+ GI S   +G       K+   +
Sbjct: 304 ISSILLEGGAKLSYSFLNKGLIDKFYYFIAPKIYGGDDGISSFCGQGPKLMSDSKDIKIL 363

Query: 342 RRDYFGSDVCL 352
            R + G ++ L
Sbjct: 364 DRRFLGDNILL 374


>gi|330830923|ref|YP_004393875.1| pyrimidine deaminase/reductase RibD [Aeromonas veronii B565]
 gi|328806059|gb|AEB51258.1| Pyrimidine deaminase/reductase RibD [Aeromonas veronii B565]
          Length = 369

 Score =  359 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 121/366 (33%), Positives = 184/366 (50%), Gaps = 19/366 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D ++MS AL  +R     T+ NP V  ++VKDG+V+G G     G PHAEV AL  
Sbjct: 2   FSQDDYQWMSRALELARRGRYTTAPNPCVGAVLVKDGVVVGEGWHQKAGEPHAEVYALRA 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ ARGATAYVTLEPCSH+GR+PPCA+ +I  G+ RVV  + DP+ +V GRGL+ LS+ 
Sbjct: 62  AGDNARGATAYVTLEPCSHHGRTPPCAEALINAGVARVVAAMVDPNPQVGGRGLRMLSEA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  D  ++ SE +     +  R       +T+K+  S D    MA   S  IT   ++ 
Sbjct: 122 GIKTDFGLLASEAEALNPGFFKRMRTAFPRVTVKLGASLDGRTAMASGESQWITSPDARR 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V  LRA+ DA+L    TVLAD   LT R + L               P+R+I+D   +L
Sbjct: 182 DVQRLRARHDAVLSSAETVLADGASLTVRWDELPPSVKVSYPKETLRQPLRVIVDSQNRL 241

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           + +  + +    +PV++             ++  + ++     DL  L  +L  + V S+
Sbjct: 242 TPELPLFQNE--SPVLLARHKASGEWPEWVQQLELPLLD-GKLDLVSLFMLLAKQNVNSV 298

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYF 346
           LVE G  +  + +   LVD ++LY++  ++G+ G       G    +             
Sbjct: 299 LVEAGPRLCGALLEKGLVDELVLYQAPKLMGDEGRGLFHLPGLTRLFQAPKLAIKDVRMV 358

Query: 347 GSDVCL 352
           G D+ +
Sbjct: 359 GQDIRI 364


>gi|325577912|ref|ZP_08148145.1| riboflavin biosynthesis protein RibD [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160342|gb|EGC72469.1| riboflavin biosynthesis protein RibD [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 376

 Score =  359 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 133/379 (35%), Positives = 196/379 (51%), Gaps = 23/379 (6%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             S  D +FM  AL  +      T+ NPSV C++VK+G ++G+G     G PHAE  AL 
Sbjct: 4   TFSPDDVKFMQLALELAAKGQYTTTPNPSVGCVLVKNGEIVGKGFHFKAGQPHAERMALA 63

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +AGE+A+GATAYVTLEPCSHYGR+PPCA  +IE G+ RVV  + DP+ +V+G+GL+ L+ 
Sbjct: 64  DAGEKAKGATAYVTLEPCSHYGRTPPCALGLIEAGVSRVVAAMADPNPQVAGKGLKMLAD 123

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI     ++  + +     +L R    + ++ LK+A+S D    MA   S  ITG  ++
Sbjct: 124 AGIPTAVNLLNEQAEALNKGFLKRMRTGKPYVQLKLAMSLDGRTAMASGESKWITGEAAR 183

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFK 229
             V  +RA+S A+L    TVLADDP L  R N   +             P+R+ILD   +
Sbjct: 184 ADVQKMRAKSTALLSTSATVLADDPSLNVRWNQFPDDLKTEYAEETVRQPIRVILDSKNR 243

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
           +    ++  T   +PV +V     P     F      I+  +  D   L+T L  R V S
Sbjct: 244 VQSSHQLFHT--HSPVWLV--GSIPRDMSVFPDFCEQILLSENYDFDMLMTELGKRQVNS 299

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRD 344
           + VE GA +A S I    VD +I+Y S  ++G+       +P  LE+      +     +
Sbjct: 300 VWVEAGANLAGSLIEQHAVDELIIYVSPKLLGDKARGLCQLPH-LEKLADAPLWQLQECE 358

Query: 345 YFGSDVCLEYIGKNLCLQE 363
               D+ L Y+  NL +Q 
Sbjct: 359 RIEDDLKLSYLP-NLLIQA 376


>gi|332799789|ref|YP_004461288.1| riboflavin biosynthesis protein RibD [Tepidanaerobacter sp. Re1]
 gi|332697524|gb|AEE91981.1| riboflavin biosynthesis protein RibD [Tepidanaerobacter sp. Re1]
          Length = 361

 Score =  359 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 125/360 (34%), Positives = 189/360 (52%), Gaps = 9/360 (2%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D  FM  AL  +      T  NP V  +IVKDG ++G G     G PHAE++AL+EAG
Sbjct: 2   ETDEYFMQRALELAEKGRKTTGENPMVGAVIVKDGKIVGEGYHKKAGGPHAEIEALKEAG 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
             A+GAT YV LEPC HYG++PPC + +I+  I RVV  ++DP+ +V+G+G   L   GI
Sbjct: 62  LNAKGATIYVNLEPCCHYGKTPPCTEALIKAQIARVVAAIEDPNSKVAGKGFSQLQNAGI 121

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   +++++       ++    E+   +  KIA S D  I ++   S  IT   ++ + 
Sbjct: 122 EVSVGVLKNKASKLNEVFIKNISEQTPFVIAKIAQSVDGKIALSSGKSKWITCDAARKKG 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H +R+  DAILVGIGTVLADDP L CRL      +P++I+LD    + ++SK+++     
Sbjct: 182 HEIRSMYDAILVGIGTVLADDPILDCRLAN-NAANPVKIVLDSSAVIPIESKLLQGKGKV 240

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            ++  T   D        +   +II    +  +L +LL  L   G+ S+LVEGGA V  S
Sbjct: 241 -ILATTAQADKGRLQKLEEMGADIIMTSQNKVNLNELLKALYNSGIYSILVEGGAKVFTS 299

Query: 302 FINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           F+   L+D +I++ S  +IG  G        L E     +F     +  G D+ L    K
Sbjct: 300 FLIEGLLDKLIVFLSPKIIGGDGKDYVENLFLREMKDVYDFYIDDAEKVGEDIMLTMYSK 359


>gi|328952293|ref|YP_004369627.1| riboflavin biosynthesis protein RibD [Desulfobacca acetoxidans DSM
           11109]
 gi|328452617|gb|AEB08446.1| riboflavin biosynthesis protein RibD [Desulfobacca acetoxidans DSM
           11109]
          Length = 362

 Score =  359 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 131/353 (37%), Positives = 187/353 (52%), Gaps = 11/353 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ +   VG TS NP V  ++V+DG ++GRG     G PHAEV+AL +AG +A GA
Sbjct: 1   MALALKLAARGVGCTSPNPMVGAVVVRDGYIVGRGYHRRYGGPHAEVEALRQAGSQADGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-IIVDRM 129
           T YVTLEPC+HYG++PPC + I+  GIRRVV+   DP+  V+G G  +L  KG ++   +
Sbjct: 61  TLYVTLEPCNHYGQTPPCTEAILAAGIRRVVIANSDPNPHVAGGGAAYLQSKGLLVQSGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +   G     A+       +  +  K A S D  I      S  ITG  ++  VH LR Q
Sbjct: 121 LAKAGSRLNEAFFKAMTIGQPFVIAKAAASLDGKIATRTNDSQWITGAPARTWVHRLRHQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DAILVG+GTV+ADDP+LT RL   Q   P+R++LD   +L L++K++     AP  +V 
Sbjct: 181 VDAILVGVGTVMADDPQLTTRLPRGQGKDPIRLVLDSRLRLPLNAKVLTQISAAPTWMVC 240

Query: 250 ENDDP-VLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
               P     A ++    +I         +L+ LL IL  R + SLLVEGGA V  +F +
Sbjct: 241 TPSAPSEKITAIQELGAEVIITPAIENRVELRTLLKILGERRIQSLLVEGGAEVQGAFFD 300

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC-----VRRDYFGSDVCL 352
           + LVD   L+ +   IG    P  L      +         +     G D+ +
Sbjct: 301 AGLVDKFHLFLAPKFIGGRQAPGILGGLGASRLAEAQLAHDLSIRRIGEDILI 353


>gi|126175361|ref|YP_001051510.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS155]
 gi|125998566|gb|ABN62641.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Shewanella baltica OS155]
          Length = 384

 Score =  359 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 132/371 (35%), Positives = 190/371 (51%), Gaps = 22/371 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           +  S  D + MS A++ +R     T  NPSV C+IVKD  ++G G     G PHAEV AL
Sbjct: 5   ISWSVLDTQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHAL 64

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE ARGATAYVTLEPCSHYGR+PPCA  +I  G++RVVV V+DP+ +V+GRG+Q L 
Sbjct: 65  RMAGEHARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVAGRGIQMLR 124

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI VD  +   E       ++ R       +T+K+A S D    ++   S  ITG  S
Sbjct: 125 DAGIEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPES 184

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH----------SPMRIILDPHFK 229
           +  V  LR +S A++ GI T+L DDP L  R   L              P+R+ILD   +
Sbjct: 185 RRDVQRLRLRSCALVTGIETILVDDPSLNVRYQELGGIKDSVTEAQLLQPLRVILDSRAR 244

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGR 285
           L L +  +  A+++P+++V+    P    A    +++ +          L +LL+ L   
Sbjct: 245 LPLSAACL--AVVSPILLVSTVAYPAKFQAQLPSHVSCLVLPAIAGRVSLPELLSYLGQ- 301

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCV 341
               +LVE GA +A +F+   L D ++LY++  ++G  G        Y         M V
Sbjct: 302 SCNHVLVEAGATLAGAFLAQGLADELVLYQAMKILGGQGRNLLQLPDYQTMAQIPALMLV 361

Query: 342 RRDYFGSDVCL 352
                G D  L
Sbjct: 362 DERKLGPDTRL 372


>gi|332290249|ref|YP_004421101.1| hypothetical protein UMN179_02191 [Gallibacterium anatis UMN179]
 gi|330433145|gb|AEC18204.1| conserved hypothetical protein [Gallibacterium anatis UMN179]
          Length = 372

 Score =  359 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 118/369 (31%), Positives = 190/369 (51%), Gaps = 19/369 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D +FM+ A+  ++      + NP+V C++VK+G ++G+G     G PHAEV A+ E
Sbjct: 6   FSQQDHQFMALAIELAKKGRFTCTPNPAVGCVLVKNGEIVGKGYHEKAGEPHAEVMAMRE 65

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE+A GATAYVTLEPCSHYGR+PPCA+ +IE G++RVV  + DP+ +V+GRGL+ L+  
Sbjct: 66  AGEKANGATAYVTLEPCSHYGRTPPCAKGLIEAGVKRVVAAMQDPNPQVAGRGLKMLADA 125

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI     +++ + +     +L R      ++ LK+A+S D    MA   S  ITG  ++ 
Sbjct: 126 GIETAVGLLQQQAEQLNKGFLKRMRTGFPYVQLKMAISIDGRTAMANGESQWITGEAARQ 185

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKL 230
            V   RA + AIL    TVL D+  L  R               +   P+R+ILD   ++
Sbjct: 186 DVQQYRAMASAILSSSKTVLTDNAALNVRWQQLPLEVQSIYPQEKLRQPLRVILDSQHQI 245

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
               ++      +P+++V+ +   +       +   ++      L  LL +L  + + S+
Sbjct: 246 EPKGRLF--ESESPILLVSPSARNMAHFPAFCQQQQLVESPYY-LTDLLNLLGKQQINSV 302

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYF 346
            VE GA +A + I + LVD +I+Y +  ++G+          L+       +        
Sbjct: 303 WVEAGATLAGALIEAGLVDELIVYIAPKLLGDQAKGLCHLPQLQHLKDAPQWRLADVSLI 362

Query: 347 GSDVCLEYI 355
           G DV L YI
Sbjct: 363 GDDVKLVYI 371


>gi|18309548|ref|NP_561482.1| riboflavin biosynthesis protein RibD [Clostridium perfringens str.
           13]
 gi|18144225|dbj|BAB80272.1| riboflavin biosynthesis protein [Clostridium perfringens str. 13]
          Length = 366

 Score =  359 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 122/361 (33%), Positives = 187/361 (51%), Gaps = 13/361 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  FM  AL  +R   G  + NP V  +IVKDG +IG+G   + G  HAE+ A+  + +
Sbjct: 1   MDEFFMKKALELARKGEGYVNPNPLVGAVIVKDGEIIGQGYHEFFGGNHAEINAINSSIK 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
              GAT YVTLEPC HYG++PPC + II+   +RVVV   DP+  VSG+G++ L + GI 
Sbjct: 61  STEGATIYVTLEPCCHYGKTPPCVEAIIKNKFKRVVVGTLDPNPLVSGKGIKILRESGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   ++E E       +     E R  I LK A++ D  I      S  IT   S+  VH
Sbjct: 121 VKVGVLEKECIRLNEIFNFYIKENRPFIALKWAMTLDGKIATKEFKSKWITNRKSREFVH 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALL 242
            LR +  +I+VGI TVL D+P+L CRLN  +  E    RI+LD   ++ LDS+I+K    
Sbjct: 181 SLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKNQSE 240

Query: 243 APVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
           +  +I T N  D +     + K I +I  +      ++ ++L  L  + + S+L+EGG  
Sbjct: 241 SKTLIFTTNKKDKIKNEKLKDKGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEGGGN 300

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352
           +  +F+ ++ V+ I  + +  V G     +P+E   +        F  V    F  D+ +
Sbjct: 301 LNFTFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGIRNVLDAFEFPEVNLKNFDKDILI 360

Query: 353 E 353
           E
Sbjct: 361 E 361


>gi|304410191|ref|ZP_07391810.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS183]
 gi|307302098|ref|ZP_07581856.1| riboflavin biosynthesis protein RibD [Shewanella baltica BA175]
 gi|304351600|gb|EFM15999.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS183]
 gi|306914136|gb|EFN44557.1| riboflavin biosynthesis protein RibD [Shewanella baltica BA175]
          Length = 384

 Score =  358 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 132/372 (35%), Positives = 192/372 (51%), Gaps = 24/372 (6%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           +  S  D + MS A++ +R     T  NPSV C+IVKD  ++G G     G PHAEV AL
Sbjct: 5   ISWSVLDTQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHAL 64

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE ARGATAYVTLEPCSHYGR+PPCA  +I  G++RVVV V+DP+ +V+GRG+Q L 
Sbjct: 65  RMAGEHARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVAGRGIQMLR 124

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI VD  +   E       ++ R       +T+K+A S D    ++   S  ITG  S
Sbjct: 125 DAGIEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPES 184

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH----------SPMRIILDPHFK 229
           +  V  LR +S A++ GI T+LADDP L  R   L              P+R+ILD   +
Sbjct: 185 RRDVQRLRLRSCALVTGIETILADDPSLNVRYQELGGIKDSVTEAQLLQPLRVILDSRAR 244

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGR 285
           L L +  +  A+++P+++V+    P    A    +++ +          L +LL+ L   
Sbjct: 245 LPLSAACL--AIVSPILLVSTVAYPAEFQAQLLSHVSCLVLPAIAGRVSLPELLSYLGQ- 301

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMC 340
               +LVE GA +A +F+   L D ++LY++  ++G  G     +P       +      
Sbjct: 302 SCNHVLVEAGATLAGAFLAEGLADELMLYQAMKILGGQGRNLLQLPDYKTMAQIPA-LTL 360

Query: 341 VRRDYFGSDVCL 352
           V     G D  L
Sbjct: 361 VDERKLGPDTRL 372


>gi|237809265|ref|YP_002893705.1| riboflavin biosynthesis protein RibD [Tolumonas auensis DSM 9187]
 gi|237501526|gb|ACQ94119.1| riboflavin biosynthesis protein RibD [Tolumonas auensis DSM 9187]
          Length = 370

 Score =  358 bits (920), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 118/370 (31%), Positives = 191/370 (51%), Gaps = 18/370 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S+ D  +MS AL+ +      TS NP+V C+IV DG ++G G     G PHAEV AL  
Sbjct: 2   FSAEDHLYMSRALQLAEQGRFTTSPNPNVGCVIVADGRIVGEGFHLRAGEPHAEVHALRM 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG++ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  ++DP+ +VSGRG++ L+  
Sbjct: 62  AGDKARGATAYVTLEPCSHFGRTPPCADALVNAGVARVVAAMEDPNPQVSGRGMRRLADA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ I   +++++ +     ++ R      ++ LK+A S D    +A   S  IT   ++ 
Sbjct: 122 GVTIQTGLLQAQAEALNPGFIKRMRHGLPYVRLKLAASLDGRTALANGQSQWITSPAARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-----------EHSPMRIILDPHFKL 230
            V   RAQS AIL G  TVL DDP L  R   L               P+RII+D   ++
Sbjct: 182 DVQRWRAQSSAILTGADTVLTDDPSLNVRWEQLPLSVQQCYAKDNVRQPIRIIIDSRQRI 241

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
              + +   ++   + +    +        ++ +  +      DL +L+  L  R +  +
Sbjct: 242 VPSAHLF--SIPGEIWLARHKEQGQWPEQVQQLSTPLADSGKLDLVQLMQTLAQRHINDI 299

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGE---GGIPSPLEEGYLEKN-FMCVRRDYF 346
            VE GA++A + +++ LVD +++Y +  ++G    G +  P  +   E N +        
Sbjct: 300 WVEAGASLAGALMSAGLVDELMVYLAPKLMGNPARGLVNLPEFKHMSEVNEWQWQDVRKV 359

Query: 347 GSDVCLEYIG 356
           G+D+ L    
Sbjct: 360 GNDLRLTLRP 369


>gi|300715569|ref|YP_003740372.1| riboflavin biosynthesis protein RibD [Erwinia billingiae Eb661]
 gi|299061405|emb|CAX58515.1| Riboflavin biosynthesis protein RibD [Erwinia billingiae Eb661]
          Length = 368

 Score =  358 bits (920), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 117/368 (31%), Positives = 184/368 (50%), Gaps = 18/368 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL  +R     T+ NP+V C+IV+DG+++G G     G PHAEV AL  AG++
Sbjct: 3   DEIWMARALELARRGRFTTTPNPNVGCVIVRDGVMVGEGYHFRAGEPHAEVHALRMAGDK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GATAYVTLEPCSH+GR+PPC   +I  G+ RV+  + DP+  V+GRGL  L Q GI +
Sbjct: 63  AQGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVIAAMQDPNPEVAGRGLYRLQQAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M  E +     +L R       + LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMQEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMANGESQWITSAEARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLAD+P LT R   L               P+R+++D   +++ + 
Sbjct: 183 LRAQSSAILSTSATVLADNPSLTVRWQDLAADTQAAYAEADLRQPVRVVIDSQNQVTPEH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           ++I  +      +  +  D +      ++ +   + D  DL  L+ +L  R + ++ VE 
Sbjct: 243 RLISQSGE--TWLARQQADNLNWPENVEQFLVPRHNDHTDLVSLMMLLGRRQINTVWVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           GA +A + + + +VD +I+Y +  ++G+          +        F        G D+
Sbjct: 301 GAKLAGALLTAGVVDELIVYMAPKLLGDNARGLCHLPGIAHLADAPAFTFSDSRQVGPDI 360

Query: 351 CLEYIGKN 358
            L     +
Sbjct: 361 RLTLTPDS 368


>gi|253998546|ref|YP_003050609.1| riboflavin biosynthesis protein RibD [Methylovorus sp. SIP3-4]
 gi|253985225|gb|ACT50082.1| riboflavin biosynthesis protein RibD [Methylovorus sp. SIP3-4]
          Length = 368

 Score =  358 bits (920), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 124/361 (34%), Positives = 195/361 (54%), Gaps = 14/361 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S+ D + M+ ALR +   +  T+ NP V C+IVKDG ++G G     G PHAEV AL +
Sbjct: 2   FSALDHQMMARALRLAEQGLYTTTPNPRVGCVIVKDGQIVGEGAHLKAGEPHAEVHALRQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  A+GA AYVTLEPCSH+GR+PPCA  +I+ G++RVV  + DP+ +V+G GLQ L  +
Sbjct: 62  AGNLAQGADAYVTLEPCSHHGRTPPCADALIKAGVKRVVAAMQDPNPQVAGSGLQRLQAQ 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E++ +     +++R   +R  +  KIA S D    +    S  ITG  ++ 
Sbjct: 122 GIAVQSGLLEAQARSLNAGFISRMTRRRPFVRSKIAASLDGATALQNGISQWITGPEARK 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
            V   RAQS  +L GIGTVLADDP+L+ R     LQ   P+R+I+D H ++S  ++I++ 
Sbjct: 182 DVQHWRAQSCVMLTGIGTVLADDPQLSVRDEAGELQGRQPLRVIVDSHLQISPQARILQG 241

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295
                 +IV  +       A  +  + +++         L  LL +L  RG+  ++VE G
Sbjct: 242 GNA---LIVYGSASADRIAALCQHGVELMHLPDHQSRVSLDSLLELLASRGINEVMVEAG 298

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVC 351
           A +  + ++  L+D +ILY +  ++G           L+      +         G D+ 
Sbjct: 299 ATLNGALLHGGLIDQLILYYAPKLLGADARGMFGLPMLQSMAARIDLDITDMRQIGRDIR 358

Query: 352 L 352
           L
Sbjct: 359 L 359


>gi|240850690|ref|YP_002972090.1| riboflavin biosynthesis protein ribD [Bartonella grahamii as4aup]
 gi|240267813|gb|ACS51401.1| riboflavin biosynthesis protein ribD [Bartonella grahamii as4aup]
          Length = 375

 Score =  358 bits (920), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 155/376 (41%), Positives = 225/376 (59%), Gaps = 13/376 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-----VIGRGVTAYGGCPHA 55
           M     D RFM+AA+R +  HVGLT  NPSV  LIV++       ++G GVTA  G PHA
Sbjct: 1   MNKKVQDERFMAAAIRLAERHVGLTGENPSVGTLIVRNDNSAGAFIVGYGVTAIHGSPHA 60

Query: 56  EVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           EVQAL  AG  A+GATAYVTLEPC+HYG++ PC   +I+ GI RVVV + D D RV G G
Sbjct: 61  EVQALHMAGSLAQGATAYVTLEPCAHYGKTSPCVNALIDSGISRVVVALTDCDKRVDGHG 120

Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           +  L   GI +V+ ++  E    L  +   +  +R  +T K+A+S DN +G    GSV I
Sbjct: 121 IALLRAAGIEVVEGILAEEAFESLWTHWCIRKIQRCAVTFKMAISADNGVGKREKGSVKI 180

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           +G +S    H+LRAQ++AILVGIGT+LADDP+L CRL G++  SP+RIILD    + LD+
Sbjct: 181 SGTLSHAHTHILRAQNNAILVGIGTILADDPQLNCRLPGMEVRSPIRIILDTDLSIPLDA 240

Query: 235 KIIKTALLAPVIIVTEND--DPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVT 288
           K+++TA+  P  ++ + D        A  +  +++   +    C +   LL +L   G+ 
Sbjct: 241 KVVQTAMKIPTWVICDVDLSKKSKKNALEQYGVSVYSVEMNNGCVEPFALLQMLYKYGIN 300

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
           S+L+EGG     +F+N+  VD +I + + +++GEG + +P    YL + F  V    FG+
Sbjct: 301 SVLLEGGVKTGETFLNAGCVDHLICFYAPVILGEGRVEAPHFGNYLSQ-FRKVESRMFGN 359

Query: 349 DVCLEYIGKNLCLQEL 364
           D   ++  K LC Q L
Sbjct: 360 DRFYKWRRKALCSQGL 375


>gi|329929844|ref|ZP_08283520.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. HGF5]
 gi|328935822|gb|EGG32283.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. HGF5]
          Length = 366

 Score =  358 bits (920), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 128/359 (35%), Positives = 189/359 (52%), Gaps = 10/359 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +MS AL  +    G T  NP V C++VKDG + G G     G PHAEV AL  AG +
Sbjct: 6   DEFYMSLALDLAERAQGQTGINPVVGCVVVKDGALAGVGTHLERGTPHAEVHALNMAGPK 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A G+T YVTLEPCSHYG +PPC++ +I  G+RRVVV  +DP+  V+GRG+Q L   GI V
Sbjct: 66  AAGSTVYVTLEPCSHYGATPPCSERLIAKGVRRVVVACEDPNPLVAGRGIQMLRAAGIEV 125

Query: 127 DRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  +  +  +    A++      R  +TLK A + D  I      S  I+   S+  VH 
Sbjct: 126 ETGILKDRALRLNEAFVKFITTGRPFVTLKTASTLDGKIASKTGDSKWISNEKSRELVHT 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR +   I+VG+ TV+AD+P LT RL G++   P+RII+D   ++ LDS ++   L    
Sbjct: 186 LRHRHQGIMVGVSTVIADNPSLTTRL-GVKGLHPVRIIVDSSLRIPLDSHVVLDGLAPTW 244

Query: 246 IIVTENDDPVLALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           I+ TE  D        +  + +I C      DLK  L  L  +G+ S+L+EGG  +  S 
Sbjct: 245 ILTTEQADDTKRTELEELGVQVIPCGPGPRVDLKGALLQLGQKGIASILLEGGGTLNGSM 304

Query: 303 INSRLVDSIILYRSQIVIGEGGIP-----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
           +  +LVD +I + +  +IG    P     S  E+     +   +  +  G ++ +  I 
Sbjct: 305 LEQKLVDRLIQFIAPKIIGGYDAPGNYMFSGYEQMNQAISLTGLETERLGDNIYVTGIP 363


>gi|313200621|ref|YP_004039279.1| riboflavin biosynthesis protein ribd [Methylovorus sp. MP688]
 gi|312439937|gb|ADQ84043.1| riboflavin biosynthesis protein RibD [Methylovorus sp. MP688]
          Length = 368

 Score =  358 bits (920), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 124/361 (34%), Positives = 196/361 (54%), Gaps = 14/361 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S+ D + M+ ALR +   +  T+ NP V C+IVKDG ++G G     G PHAEV AL +
Sbjct: 2   FSALDHQMMARALRLAEQGLYTTTPNPRVGCVIVKDGQIVGEGAHLKAGEPHAEVHALRQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ A+GA AYVTLEPCSH+GR+PPCA  +I+ G++RVV  + DP+ +V+G GLQ L  +
Sbjct: 62  AGDLAQGADAYVTLEPCSHHGRTPPCADALIKAGVKRVVAAMQDPNPQVAGSGLQRLQAQ 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E++ +     +++R   +R  +  KIA S D    +    S  ITG  ++ 
Sbjct: 122 GIAVQSGLLEAQARSLNAGFISRMTRRRPFVRSKIAASLDGATALQNGISQWITGPEARK 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
            V   RAQS  +L GIGTVLADDP+L+ R     LQ   P+R+I+D H ++S  ++I++ 
Sbjct: 182 DVQHWRAQSCVMLTGIGTVLADDPQLSVRDEAGELQGRQPLRVIVDSHLQISPQARILQG 241

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295
                 +IV  +       A  +  + +++         L  LL +L  RG+  ++VE G
Sbjct: 242 GNA---LIVYGSASADRIAALCQHGVELMHLPDHQSRVSLDSLLELLASRGINEVMVEAG 298

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVC 351
           A +  + ++  L+D +ILY +  ++G           L+      +         G D+ 
Sbjct: 299 ATLNGALLHGGLIDQLILYYAPKLLGADARGMFGLPMLQSMAARIDLDITDMRQIGRDIR 358

Query: 352 L 352
           L
Sbjct: 359 L 359


>gi|120598057|ref|YP_962631.1| riboflavin biosynthesis protein RibD [Shewanella sp. W3-18-1]
 gi|120558150|gb|ABM24077.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Shewanella sp. W3-18-1]
          Length = 384

 Score =  358 bits (920), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 135/377 (35%), Positives = 198/377 (52%), Gaps = 24/377 (6%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           +  S+ D + MS A++ +R     T  NPSV C+IVKD  +IG G     G PHAEV AL
Sbjct: 5   ITWSALDIQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIIGEGYHQKAGEPHAEVHAL 64

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE ARGATAYVTLEPCSHYGR+PPCA  +I  G++RVVV V+DP+ +V GRG+Q L 
Sbjct: 65  RMAGERARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLR 124

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI VD  +   E       ++ R       +T+K+A S D    ++   S  ITG  S
Sbjct: 125 DAGIEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPES 184

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR---LNGLQEH-------SPMRIILDPHFK 229
           +  V  LR +S A++ GI T+LADDP L  R   L  L++         P+R+ILD   +
Sbjct: 185 RRDVQRLRLRSCALVTGIETILADDPLLNVRYQELGSLKDRVTEAQLLQPLRVILDSRAR 244

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGR 285
           L L +  +  A+++P+++V+    P    A    +++ +     +    L +LL+ L   
Sbjct: 245 LPLSAACL--AIVSPILLVSTVAYPADFQAQLPSHVSCLLLPAIEGRVSLPELLSYLGQ- 301

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMC 340
               +LVE GA +A +F+   L D ++LY++  ++G  G     +P      ++      
Sbjct: 302 SCNHVLVEAGATLAGAFLAEGLADELVLYQAMKILGGHGRNLLQLPDYQTMAHIPA-LTL 360

Query: 341 VRRDYFGSDVCLEYIGK 357
           V     G D  L    K
Sbjct: 361 VDERKIGPDTRLTLSVK 377


>gi|315646375|ref|ZP_07899493.1| riboflavin biosynthesis protein RibD [Paenibacillus vortex V453]
 gi|315278018|gb|EFU41338.1| riboflavin biosynthesis protein RibD [Paenibacillus vortex V453]
          Length = 366

 Score =  358 bits (920), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 124/359 (34%), Positives = 187/359 (52%), Gaps = 10/359 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +MS AL  +    G T  NP V C+IVK+G + G G     G PHAE+ AL  AG +
Sbjct: 6   DEFYMSLALDLAERAQGQTGINPVVGCVIVKNGALAGVGTHLERGTPHAEIHALNMAGTK 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A G+T YVTLEPCSHYG +PPC++ +I  G++RVVV  +DP+  V+G+G+Q L   GI V
Sbjct: 66  AAGSTVYVTLEPCSHYGATPPCSERLIAEGVKRVVVACEDPNPLVAGKGIQMLRAAGIEV 125

Query: 127 DRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +  E  +    A++      +  +TLK A + D  I      S  I+   S+  VH 
Sbjct: 126 VTGILRERALRLNEAFIKFITTGQPFVTLKTASTLDGKIASKTGDSKWISSEESRELVHT 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR +   I+VG+ TV+AD+P LT RL+    H P+RII+D   ++ LDS ++        
Sbjct: 186 LRHRHQGIMVGVSTVIADNPSLTTRLSVGGLH-PVRIIVDSSLRMPLDSHVVSDGTAPTW 244

Query: 246 IIVTENDDPVLALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           I+ TE  D        ++ I +I C      DLK  +  L   G++S+L+EGG  +  + 
Sbjct: 245 ILTTEQADEGKRTLLEERGIQVIPCGEGPRVDLKAAIAKLGQMGISSILLEGGGTLNGAM 304

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS-PLEEGYLEKN----FMCVRRDYFGSDVCLEYIG 356
           +  +LVD +I + +  +IG    P   +  GY + N       +     G ++ +  I 
Sbjct: 305 LEQKLVDRLIQFIAPKIIGGYDAPGNFMFSGYEQMNQAIVLTGLESKRLGDNIYITGIP 363


>gi|297538271|ref|YP_003674040.1| riboflavin biosynthesis protein RibD [Methylotenera sp. 301]
 gi|297257618|gb|ADI29463.1| riboflavin biosynthesis protein RibD [Methylotenera sp. 301]
          Length = 370

 Score =  358 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 120/362 (33%), Positives = 182/362 (50%), Gaps = 12/362 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D  +M+ ALR +   +  T  NP V C+IVK+  ++G+G     G PHAEV AL E
Sbjct: 2   FSIADHTYMTLALRLAERGLYTTQPNPRVGCVIVKNNQIVGQGAHLKAGEPHAEVFALRE 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  A GA AYVTLEPC+H+GR+PPC   +I   ++RVVV + DP+  V+G G++ L   
Sbjct: 62  AGANAEGADAYVTLEPCNHHGRTPPCVDALINARVKRVVVAMQDPNPLVAGNGIKRLQAH 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   +ME+E K     +++R      ++  K+A S D    +    S+ ITG  ++ 
Sbjct: 122 GIEVEVGLMEAESKSLNLGFISRMTSALPYVRCKVAASLDGRTALNNGKSLWITGEPARL 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA- 240
            V   RAQS AI+ GIGTVL D+P +  RL       P+R+I+D + +   D K++    
Sbjct: 182 DVQHWRAQSCAIVTGIGTVLTDNPSMNVRLEN-TGRQPLRVIVDSNLQTPTDCKMLNPEL 240

Query: 241 -LLAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGG 295
             L+PV++    D    A A       +++        +L  LL  L  R V  +L+E G
Sbjct: 241 LSLSPVLVAYAQDAHHKASALTATGAQLLHLPDESGRVNLHALLKNLASRDVNEVLLEAG 300

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVC 351
             +  +F+ + LVD  I Y +  ++G         S L E     +         G D+ 
Sbjct: 301 QGLNGAFLQAGLVDEFIFYYAPKLMGADAKGMFAISELIEMQQATDLQIFDVRQIGQDIR 360

Query: 352 LE 353
           + 
Sbjct: 361 VR 362


>gi|317492964|ref|ZP_07951388.1| riboflavin biosynthesis protein RibD [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919086|gb|EFV40421.1| riboflavin biosynthesis protein RibD [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 373

 Score =  358 bits (919), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 124/365 (33%), Positives = 184/365 (50%), Gaps = 18/365 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     T+ NP+V C+IV +  ++G G     G PHAEV AL  AG++
Sbjct: 8   DEFYMARAFELARRGRFTTTPNPNVGCVIVLNDEIVGEGYHLRAGEPHAEVHALHMAGDK 67

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q GI +
Sbjct: 68  ARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPNVAGRGLFKLQQAGIDV 127

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R       + LK+A S D    MA   S  IT   S+  V  
Sbjct: 128 SHGLMMNEAEAVNRGFLKRMRTGFPFVQLKMAASLDGRTAMASGESQWITSAASRQDVQR 187

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP LT R + L               P+R+I+D   +++ + 
Sbjct: 188 YRAQSSAILSSSATVLADDPSLTVRWDELDVTTQQAYPRENLRQPLRVIIDSQNRITTEH 247

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           K+I  A     ++   + D +      K+     Y    DL  L+  L    + S+ VE 
Sbjct: 248 KLISQAGE--TLLARIHPDDLHWPENVKQLAIPQYGQGIDLVVLMMQLGKLQINSVWVEA 305

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDV 350
           GA++A + + + LVD +I+Y +  ++G+      +   LE+      F+       G D+
Sbjct: 306 GASLAGALLQAGLVDELIIYLAPKLLGDAARGLCVLPGLEQLADAPQFVFSEVMPVGPDL 365

Query: 351 CLEYI 355
            +   
Sbjct: 366 RIVLR 370


>gi|127512119|ref|YP_001093316.1| riboflavin biosynthesis protein RibD [Shewanella loihica PV-4]
 gi|126637414|gb|ABO23057.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Shewanella loihica PV-4]
          Length = 386

 Score =  358 bits (919), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 125/373 (33%), Positives = 195/373 (52%), Gaps = 22/373 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S FD++ M+ A++ +R     TS NP+V C+IV+   ++G G     G PHAEV AL
Sbjct: 5   MAWSKFDSQMMARAIKLARKGQYTTSPNPNVGCVIVQGETLVGEGFHIAAGGPHAEVHAL 64

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AG++A+GATAYVTLEPCSHYGR+PPCA+ +I+  + RVVV V DP+ +VSGRG++ L 
Sbjct: 65  RMAGDKAKGATAYVTLEPCSHYGRTPPCAEALIKAEVSRVVVAVTDPNPQVSGRGIKMLQ 124

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI +   + + E       ++ R       + +K+A S D    ++   S  ITG  +
Sbjct: 125 DAGILVEVGLHQEEAAALNPGFMKRMRSGLPWVGIKLATSLDGKTALSNGVSKWITGPEA 184

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR----------LNGLQEHSPMRIILDPHFK 229
           +  V  +RA+ DA++ GI TVLADDP L  R          L       P+R++LD   +
Sbjct: 185 RRDVQRMRARFDAVVTGIETVLADDPSLNVRHLELGSLSEQLTEADIRQPLRVVLDSRAR 244

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGR 285
           L   +K+ +T   +PV++V+    P    +   + ++ +     +    LK LL  L   
Sbjct: 245 LGAKAKLFET--QSPVLLVSCQPYPEAVASAWPEQVSQLQLPSDNGQVPLKALLEHLGS- 301

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCV 341
            + S++VE GA +A +F+   L D ++LY++  ++G  G        Y E          
Sbjct: 302 QLNSVMVEAGATLAGAFMAQGLADELVLYQAPKILGGHGRNLLALPDYTEMTQLPALKLC 361

Query: 342 RRDYFGSDVCLEY 354
                G+D  L +
Sbjct: 362 DERAIGADRRLTF 374


>gi|168214536|ref|ZP_02640161.1| riboflavin biosynthesis protein RibD [Clostridium perfringens CPE
           str. F4969]
 gi|170714018|gb|EDT26200.1| riboflavin biosynthesis protein RibD [Clostridium perfringens CPE
           str. F4969]
          Length = 366

 Score =  358 bits (919), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 121/361 (33%), Positives = 185/361 (51%), Gaps = 13/361 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  FM  AL  +R   G  + NP V  +IVK G +IG+G   + G  HAE+ A+  + +
Sbjct: 1   MDEFFMKKALELARKGEGYVNPNPLVGAVIVKGGEIIGQGYHEFFGGNHAEINAINSSIK 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
              GAT YVTLEPC HYG++PPC + II+   +RVVV   DP+  VSG+G++ L + GI 
Sbjct: 61  SIEGATIYVTLEPCCHYGKTPPCVEAIIKNKFKRVVVGTLDPNPLVSGKGIRILRESGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   ++E E       +     E R  I LK A++ D  I      S   T   S+  VH
Sbjct: 121 VNVGVLEKECIRLNEIFNFYIKENRPFIALKWAMTLDGKIATKDFKSKWTTNKKSREFVH 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALL 242
            LR +  +I+VGI TVL D+P+L CRLN  +  E    RI+LD   ++ LDS+I+K    
Sbjct: 181 SLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKNQSE 240

Query: 243 APVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
           +  +I T N  D +     + K I +I  +      ++ ++L  L  + + S+L+EGG  
Sbjct: 241 SKTLIFTTNKKDKMKNEKLKDKGIEVIEVNLDEGKININQVLACLKEKNIDSVLIEGGGN 300

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352
           +  SF+ ++ V+ I  + +  V G     +P+E   +        F  V    F  D+ +
Sbjct: 301 LNFSFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGIRNVLDAFEFPEVNLKNFDEDILI 360

Query: 353 E 353
           E
Sbjct: 361 E 361


>gi|238787980|ref|ZP_04631776.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
           frederiksenii ATCC 33641]
 gi|238723928|gb|EEQ15572.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
           frederiksenii ATCC 33641]
          Length = 369

 Score =  358 bits (919), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 183/367 (49%), Gaps = 18/367 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     TS NP+V C++V+DG ++G G     G PHAEV AL  AGE+
Sbjct: 4   DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+ +V+GRGL  L Q GI +
Sbjct: 64  ARGATAYVTLEPCSHHGRTPPCADALVAAGVVRVVAAMQDPNPQVAGRGLYKLKQAGIAV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
            RA+S AIL    TVLADDP LT R   L               P RIILD H +++ + 
Sbjct: 184 FRAESSAILSTSATVLADDPSLTVRWQELDTETQARYPQDTLRQPTRIILDSHNRVTPEH 243

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           K+I+        +     D     A  ++ +   + +  DL  L+  L  R + S+ VE 
Sbjct: 244 KVIQQE--GTCWLARVEADEQPWPANVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           G  +A + + + +VD +ILY +  ++G         + L        F        G D+
Sbjct: 302 GPQLAGALLQAGVVDELILYIAPKLLGSDARGLCQLAGLTHLSQAPEFEFSDVRQVGPDL 361

Query: 351 CLEYIGK 357
            L    K
Sbjct: 362 RLRLKPK 368


>gi|146293872|ref|YP_001184296.1| riboflavin biosynthesis protein RibD [Shewanella putrefaciens
           CN-32]
 gi|145565562|gb|ABP76497.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Shewanella putrefaciens CN-32]
          Length = 384

 Score =  358 bits (919), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 135/377 (35%), Positives = 196/377 (51%), Gaps = 24/377 (6%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           +  S+ D + MS A++ +R     T  NPSV C+IVKD  +IG G     G PHAEV AL
Sbjct: 5   ITWSALDIQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIIGEGYHQKAGEPHAEVHAL 64

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE ARGATAYVTLEPCSHYGR+PPCA  +I  G++RVVV V+DP+ +V GRG+Q L 
Sbjct: 65  RMAGERARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLR 124

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI VD  +   E       ++ R       +T+K+A S D    ++   S  ITG  S
Sbjct: 125 DAGIEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPES 184

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR---LNGLQEH-------SPMRIILDPHFK 229
           +  V  LR +S A++ GI T+LADDP L  R   L  L++         P+R+ILD   +
Sbjct: 185 RRDVQRLRLRSCALVTGIETILADDPSLNVRYQELGSLKDRVTEAQLLQPLRVILDSRAR 244

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGR 285
           L L   +   A+++P+++V+    P    A    +++ +          L +LL+ L   
Sbjct: 245 LPLS--VACLAIVSPILLVSTVAYPAEFQAQLPSHVSCLLLPAIAGRVSLPELLSYLGQ- 301

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMC 340
               +LVE GA +A +F+   L D ++LY++  ++G  G     +P      ++      
Sbjct: 302 SCNHVLVEAGATLAGAFLAEGLADELVLYQAMKILGGHGRNLLQLPDYQTMAHIPA-LTL 360

Query: 341 VRRDYFGSDVCLEYIGK 357
           V     G D  L    K
Sbjct: 361 VDERKLGPDTRLTLSVK 377


>gi|300813870|ref|ZP_07094175.1| riboflavin biosynthesis protein RibD [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300512057|gb|EFK39252.1| riboflavin biosynthesis protein RibD [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 372

 Score =  358 bits (919), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 127/364 (34%), Positives = 198/364 (54%), Gaps = 17/364 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
           +MS A+  +    G T TNP V C+IV D  +IGRG     G  HAE  A+E+A   GE 
Sbjct: 10  YMSLAMELAEKGKGFTLTNPMVGCVIVNDDRIIGRGYHKKFGDLHAETMAIEDAKKNGES 69

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             G+T YV LEPC HYG+ PPC + IIE  I++VV+   DP+ +VSG+G++ L   GI +
Sbjct: 70  LEGSTLYVNLEPCCHYGKQPPCTKAIIENKIKKVVIANVDPNKKVSGKGIKTLEDAGIEV 129

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V+ +ME EG      +      +R  +T+K A++ D  I      S  I+  IS++ VH 
Sbjct: 130 VEGIMEEEGLKLNEEFFHFIKTQRPFVTMKSAMTLDGKIASVTGDSKWISSQISRDYVHK 189

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRA+++AI+VGIGTVL DDP L  R+ G    +P +I++D   ++ LD+K++ ++    +
Sbjct: 190 LRAENNAIMVGIGTVLKDDPSLNVRIYG-NYKNPTKILVDSKLRIPLDAKLLSSSDAPTI 248

Query: 246 IIVTENDDPVLALAFRK-KNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300
           I  TE  D       ++  N++I+ C  +    DL  L + L    + S+L+EGG  + +
Sbjct: 249 IACTEGYDTEKYNKLKEMANVHILVCKKKDGRVDLLDLFSKLKDFDICSVLLEGGGNLNY 308

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-----GSDVCLE-Y 354
           S +   LVD +I +    +IG  G+ SP+    +      ++   F     G D+ +  Y
Sbjct: 309 SMLRENLVDRLIFFIGPKIIGGSGL-SPVAGEGITLMKDAIKIKDFQVEKMGQDILINAY 367

Query: 355 IGKN 358
           + K 
Sbjct: 368 VDKE 371


>gi|237743881|ref|ZP_04574362.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium sp. 7_1]
 gi|229432912|gb|EEO43124.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium sp. 7_1]
          Length = 370

 Score =  358 bits (919), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 199/365 (54%), Gaps = 17/365 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D ++M+ A+  ++   G  + NP V  ++VKDG +IG G     G PHAEV AL EAG
Sbjct: 4   NSDEKYMARAIELAKRGTGSVNPNPLVGAVVVKDGKIIGEGWHKKYGGPHAEVWALNEAG 63

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E A+GAT YVTLE CSH G++PPCA+ I+E GI+R VV   DP+  V+G+G++ +   GI
Sbjct: 64  ENAKGATIYVTLESCSHQGKTPPCAKRIVEAGIKRCVVACIDPNPLVAGKGMKIIEDAGI 123

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++E E K     +L     K  ++ LK  ++ D  I      S  IT  I++ +V
Sbjct: 124 EVKFGVLEKEAKDVNKIFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKV 183

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKT 239
             LR +  AI+VGI TVL D+P L  RL+    G+++ +P RI++DP+ +  +++K +  
Sbjct: 184 QFLRTKFMAIMVGINTVLKDNPSLDSRLDEKKFGIEKRNPFRIVVDPNLESPIEAKFLNF 243

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNI--NIIYCDCRD--LKKLLTILVGRGVTSLLVEGG 295
                 IIVT ND+  L      KN+    I+ + +   +K +L  L    + S+L+EGG
Sbjct: 244 N-DGKAIIVTSNDNRELEKIKEYKNLGTRFIFLEGKIFKMKDILKELGKLEIDSVLLEGG 302

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV------RRDYFGSD 349
           + +  +     ++++  ++ +  +IG+     P   G+   N   V      + + +G +
Sbjct: 303 SGLISTAFKENIINAGEIFIAPKIIGDNSA-IPFINGFNFDNMEDVFKLPNPKFNIYGDN 361

Query: 350 VCLEY 354
           + +E+
Sbjct: 362 ISIEF 366


>gi|228940450|ref|ZP_04103019.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228979928|ref|ZP_04140248.1| Riboflavin biosynthesis protein [Bacillus thuringiensis Bt407]
 gi|228779807|gb|EEM28054.1| Riboflavin biosynthesis protein [Bacillus thuringiensis Bt407]
 gi|228819215|gb|EEM65271.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 348

 Score =  358 bits (919), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 120/341 (35%), Positives = 184/341 (53%), Gaps = 10/341 (2%)

Query: 22  VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
            G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARGAT YVTLEPCSH
Sbjct: 2   KGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGATIYVTLEPCSH 61

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140
           YGR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  + E E K     
Sbjct: 62  YGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEV 121

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R ++ AILVG  TV
Sbjct: 122 FNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRNENAAILVGANTV 181

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
             D+P LT R+      +P+RIILD   ++ +++ ++        I  T N       A 
Sbjct: 182 QKDNPSLTTRIP--NGRNPIRIILDSTLRIPMEANVVTDGEAPTWIFTTSNHAAKKKKAL 239

Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
               + +         +L ++L +L  +GV+SLL+EGG  V  SFI ++L++ +ILY + 
Sbjct: 240 ENAGVKVFVTSGEKHINLHEILDVLGQKGVSSLLIEGGGEVNASFIENKLMNKLILYVAP 299

Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
            +IG    PS +    + K    +       D+    +GK+
Sbjct: 300 KIIGGRLAPSFVGGTGITKMQDAIEFK----DISFTQVGKD 336


>gi|260914242|ref|ZP_05920715.1| riboflavin biosynthesis protein RibD [Pasteurella dagmatis ATCC
           43325]
 gi|260631875|gb|EEX50053.1| riboflavin biosynthesis protein RibD [Pasteurella dagmatis ATCC
           43325]
          Length = 377

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 126/370 (34%), Positives = 197/370 (53%), Gaps = 19/370 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S+ DA FM  AL  ++     T+ NPSV C++VKDG ++G+G     G PHAEV AL +
Sbjct: 4   FSAQDAVFMQMALDLAQQGQFTTTPNPSVGCVLVKDGSIVGKGFHFKAGEPHAEVMALRD 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE+A+GATAYVTLEPCSH+GR+PPCA+ +IE G+ RVV  + DP+ +V+G+GLQ L+++
Sbjct: 64  AGEQAKGATAYVTLEPCSHFGRTPPCAKGLIEAGVARVVSAMRDPNPQVAGKGLQMLAEQ 123

Query: 123 GIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI     +  E   +    +L R    +  + LK+A+S D    +A   S  IT  +S+ 
Sbjct: 124 GIESAVGLLEEKAEWLNRGFLKRMRTGKPFVQLKMAMSLDGRTALANGESKWITSELSRQ 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V + RA++ AIL    TV+ADDP L  R   L +             P+R+ILD   ++
Sbjct: 184 DVQVERAKASAILSASSTVIADDPLLNVRWEQLPKQVQQQYKHENLRQPIRVILDSQNQV 243

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
               ++ +    +PV  V++++  +       + I I+      L  L+  L  R + +L
Sbjct: 244 QPTQRLFQVD--SPVWFVSKSERDLSGYPQSCEQI-ILEDKAEYLHNLMLELGKRQINTL 300

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI---PSP-LEEGYLEKNFMCVRRDYF 346
            +E GA +A + I + LVD +I+Y +  ++G+        P L +      +     +  
Sbjct: 301 WIEAGATLAGALIEANLVDELIIYTAPKLLGDEARGLCKLPHLNKLADASQWKLHSIERI 360

Query: 347 GSDVCLEYIG 356
           G DV   Y  
Sbjct: 361 GDDVKSIYHP 370


>gi|22299695|ref|NP_682942.1| riboflavin biosynthesis protein [Thermosynechococcus elongatus
           BP-1]
 gi|22295879|dbj|BAC09704.1| riboflavin biosynthesis protein [Thermosynechococcus elongatus
           BP-1]
          Length = 379

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 108/363 (29%), Positives = 190/363 (52%), Gaps = 13/363 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ DA++M   L  +    G T+ NP V C+IV +G VIG G     G PHAEV AL  
Sbjct: 10  IATIDAQYMGRCLELAARAKGRTAPNPLVGCVIVAEGRVIGEGFHPKAGEPHAEVFALRS 69

Query: 63  AGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
             E  R     AT YV LEPC+HYGR+PPC + I+  GI +VVV + DP+ +V+G G++ 
Sbjct: 70  VSESDRPLLSKATLYVNLEPCNHYGRTPPCTEAILAAGIPKVVVGMIDPNPQVAGAGVER 129

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L   GI +   + E++ +    A++ R   +R    LK A++ D  I      S+ ++G 
Sbjct: 130 LRSAGIEVTVGVREADCQRLNEAFVHRVRYQRPFGILKYAMTLDGKIASRAGHSLWVSGE 189

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            ++  VH LR++ DA++VG  TV  D+P LT R      H+P+R+++     L  D+ + 
Sbjct: 190 AARAMVHQLRSECDAVIVGGNTVRLDNPLLTSRH----GHNPLRVVMSRTLDLPPDASLW 245

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
            T   A +++ + +    L    + + + +++ +      ++ +L  RG+ + L E G +
Sbjct: 246 DTTAAATLVVTSASPQHPLIPQLQARGVEVVHREPLTPTAVMALLHQRGIMTALWECGGS 305

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           +A + I   +V  +  + +  +IG    P+P+ +  L K    +    +  DV  + +G+
Sbjct: 306 LAAAAIAEGMVQKVWAFIAPKIIGGFDAPTPVADLGLTKMHEAL----YLEDVTWQTVGE 361

Query: 358 NLC 360
           ++ 
Sbjct: 362 DIL 364


>gi|182626736|ref|ZP_02954476.1| riboflavin biosynthesis protein RibD [Clostridium perfringens D
           str. JGS1721]
 gi|177907904|gb|EDT70496.1| riboflavin biosynthesis protein RibD [Clostridium perfringens D
           str. JGS1721]
          Length = 366

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 120/361 (33%), Positives = 185/361 (51%), Gaps = 13/361 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  FM  AL  +R   G  + NP V  +IVKDG +IG+G   + G  HAE+ A+  + +
Sbjct: 1   MDEFFMKKALELARKGEGYVNPNPLVGAVIVKDGEIIGQGYHEFFGGNHAEINAINSSIK 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
              GAT YVTLEPC HYG++PPC + II+   +RVVV   DP+  VSG+ ++ L + GI 
Sbjct: 61  STEGATIYVTLEPCCHYGKTPPCVEAIIKNRFKRVVVGNLDPNPLVSGKSIKILRESGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   ++E E       +     E R  I LK A++ D  I      S  IT   S+  VH
Sbjct: 121 VKVGVLEKECIRLNEIFNFYIKENRPFIALKWAMTLDGKIATKDFKSKWITNKKSREFVH 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALL 242
            LR +  +I+VGI TVL D+P+L CRLN  +  E    RI+LD   ++ LDS+I+K    
Sbjct: 181 SLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKNQNE 240

Query: 243 APVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
           +  +I T N  D +     +   I +I  +      ++ ++L  L  + + S+L+EGG  
Sbjct: 241 SKTLIFTTNKKDKIKNEKLKDIGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEGGGN 300

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
           +  +F+ ++ V+ I  + +  V G     +P+E   +        F  V    F  D+ +
Sbjct: 301 LNFTFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGVSNVLDAFEFPEVNLKNFDKDILI 360

Query: 353 E 353
           E
Sbjct: 361 E 361


>gi|313669033|ref|YP_004049317.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/phosphoribosylaminouracil reductase [Neisseria
           lactamica ST-640]
 gi|313006495|emb|CBN87958.1| putative diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/phosphoribosylaminouracil reductase [Neisseria
           lactamica 020-06]
          Length = 369

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 129/365 (35%), Positives = 190/365 (52%), Gaps = 11/365 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL+ +      TS NP V C+I + G ++G+G     G PHAEV AL +
Sbjct: 2   FSETDISMMQNALKLAALGRFSTSPNPRVGCVIAQGGQIVGQGFHVKAGEPHAEVHALRQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVVV + DP+  V+G+GL  L   
Sbjct: 62  AGEMAKGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVVAMRDPNPLVAGKGLALLEAA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  +  ++ESE +     +L+R   +R  + LK AVS D    ++   S  ITG  ++ 
Sbjct: 122 GIKTECGLLESEARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V +LRA+S A+L GIGTVLAD+P L  R        P RI+LD   +L  +S ++    
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPNSHLVTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGA 296
               I   E ++  L       ++ I+          DL +L+ +L   G   ++VE GA
Sbjct: 241 SPTYIATLERNEDKLRPYREHAHVRILMPSETADGKIDLHRLMRLLADEGYGEVMVEAGA 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +A +F+   L D I+LYRS  ++G G     +P           +  V  +  G D+  
Sbjct: 301 KLASAFLAEDLADEIVLYRSPKILGSGKDLFSLPENRTALSAPPLWTPVSTEILGHDIKT 360

Query: 353 EYIGK 357
            +   
Sbjct: 361 VFRKN 365


>gi|261405997|ref|YP_003242238.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. Y412MC10]
 gi|261282460|gb|ACX64431.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. Y412MC10]
          Length = 369

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 127/359 (35%), Positives = 187/359 (52%), Gaps = 10/359 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +MS AL  +    G T  NP V C++VKDG + G G     G PHAEV AL  AG +
Sbjct: 9   DEFYMSLALDLAERAQGQTGINPVVGCVVVKDGALAGVGTHLERGTPHAEVHALNMAGPK 68

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A G+T YVTLEPCSHYG +PPC++ +I  G+RRVVV  +DP+  V+GRG+Q L   GI V
Sbjct: 69  AAGSTVYVTLEPCSHYGATPPCSERLIAEGVRRVVVACEDPNPLVAGRGIQMLRAAGIEV 128

Query: 127 DRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  +  +  +    A++      R  +TLK A + D  I      S  I+   S+  VH 
Sbjct: 129 ETGILKDRALRLNEAFVKFITTGRPFVTLKTASTLDGKIASKTGDSKWISNEKSRELVHT 188

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR +   I+VG+ TV+AD+P LT RL G++   P+RII+D   ++ LDS ++   L    
Sbjct: 189 LRHRHQGIMVGVSTVIADNPSLTTRL-GVEGLHPVRIIVDSSLRIPLDSHVVSDGLAPTW 247

Query: 246 IIVTENDDPVLALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           I+ TE  D        +    +  C      DLK  L  L  +G+ S+L+EGG  +  S 
Sbjct: 248 ILATEQADDTKRSELEELGAQVFPCGPGPRVDLKVALLQLGQKGIASILLEGGGTLNGSM 307

Query: 303 INSRLVDSIILYRSQIVIGEGGIP-----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
           +  +LVD +I + +  +IG    P     S  E+     +   +  +  G ++ +  I 
Sbjct: 308 LEQKLVDRLIQFIAPKIIGGYDAPGNYMFSGYEQMNQAISLTGLETERLGDNIYVTGIP 366


>gi|109897636|ref|YP_660891.1| riboflavin biosynthesis protein RibD [Pseudoalteromonas atlantica
           T6c]
 gi|109699917|gb|ABG39837.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Pseudoalteromonas atlantica T6c]
          Length = 372

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 118/366 (32%), Positives = 192/366 (52%), Gaps = 18/366 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALE 61
            S+ DA+ M+ A+R +      TS NP+V C+I    G ++G+G     G PHAE+ A+ 
Sbjct: 4   FSALDAKMMALAIRLAEKGQYTTSPNPNVGCVITDAQGNIVGQGWHQKAGTPHAEIHAIA 63

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +AGE  +GATAYVTLEPC+H+GR+ PC++ +++ G++RVV  + DP+  V+G GLQ LS 
Sbjct: 64  QAGERTKGATAYVTLEPCNHHGRTGPCSEALLDAGVKRVVAAMVDPNPLVAGSGLQKLSD 123

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            G+ +   ++ESE K     ++ R    +  +T+K+A S D    +    S  ITG +++
Sbjct: 124 AGVQVSSGLLESEAKALNRGFIKRMQTGKPWVTVKLASSLDGKTALNNGESQWITGPLAR 183

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCR----------LNGLQEHSPMRIILDPHFKL 230
             V   RAQS AIL G GTVLAD+P L  R          L  +    P+R++LD   ++
Sbjct: 184 EDVQRHRAQSCAILSGSGTVLADNPSLNVRYSELGFARNALAEVNLRQPVRVLLDGRNQM 243

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
             D  +   AL +P++I+    +        ++          DL+ ++  L  RG   +
Sbjct: 244 RPDLHLF--ALSSPIVIINSQPNTAEFPDHVEQYQAQSNGAQLDLQDVMKHLGQRGFNHI 301

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYF 346
            VE GA +A + + ++L+D +ILY++  ++G+ G        L +               
Sbjct: 302 WVEAGAKLAGALLQNKLIDELILYQAPKLLGDKGRDLFAVDELTQMQQAFELQWQDVRQV 361

Query: 347 GSDVCL 352
           G D+ L
Sbjct: 362 GPDLKL 367


>gi|296101536|ref|YP_003611682.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295055995|gb|ADF60733.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 367

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 124/364 (34%), Positives = 183/364 (50%), Gaps = 18/364 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ A++ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEMYMARAMKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +ARGATAYVTLEPCSH+GR+PPC + +I  G+ RVV  + DP+ +V+GRGL  L Q+GI 
Sbjct: 62  KARGATAYVTLEPCSHHGRTPPCCEALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQEGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M  + +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMQDAEAINKGFLKRMRTGFPYIQLKLGASLDGRTAMANGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP +T R N L               P+RI++D   +++ +
Sbjct: 182 HLRAQSHAILTSSETVLADDPAMTVRWNELNADTQALYPQENLRQPLRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++        I    +D        +  +   +    DL  L+ +L  + V S+ VE
Sbjct: 242 HRIVQQPGE--TWIARTKEDSRDWPESVRSIMVPEHNGHLDLVVLMMLLGKQQVNSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G       +  G                  G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYVAPKLLGSDARGLFVLPGLEKLADAPQLKFSEIRPVGPD 359

Query: 350 VCLE 353
           VCL 
Sbjct: 360 VCLH 363


>gi|288818291|ref|YP_003432639.1| riboflavin biosynthesis protein [Hydrogenobacter thermophilus TK-6]
 gi|288787691|dbj|BAI69438.1| riboflavin biosynthesis protein [Hydrogenobacter thermophilus TK-6]
 gi|308751888|gb|ADO45371.1| riboflavin biosynthesis protein RibD [Hydrogenobacter thermophilus
           TK-6]
          Length = 361

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 140/359 (38%), Positives = 196/359 (54%), Gaps = 9/359 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   D  FM  AL  ++   GLT  NP+V C+IVKDG +I  G     G PHAE  ALE+
Sbjct: 2   MRETDHHFMRRALELAKLRKGLTHPNPTVGCVIVKDGKIIAEGYHEKVGMPHAEAVALEK 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG +A G+T YVTLEPC+HYGR+PPC   II   ++RVV+   DP+  VSGRG+Q L   
Sbjct: 62  AGTQAEGSTLYVTLEPCTHYGRTPPCTDAIIRAKVKRVVIATLDPNPLVSGRGVQKLRDA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E E +     + T   +KR +ITLK+A S D  I      S  IT   S+ 
Sbjct: 122 GIDVCVGVLEDEARELNEDFFTYITQKRPYITLKLAQSIDGRIATKHGESQWITNQESRT 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
             H LRAQ+ A+LVGI TVL DDP LT R     E  P+R++LDP+ ++ + SK+++   
Sbjct: 182 FAHRLRAQATAVLVGINTVLRDDPSLTVRHIPW-ESQPIRVVLDPNLRIPITSKLVR-EK 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297
            A  +I+T +++         + I ++     +    L+++L  L    +  LLVEGGA 
Sbjct: 240 TAKTLIITASENREKMKILEDEGIKVLLAPAEEGKLILREVLRELYFMEIMHLLVEGGAQ 299

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL--EKNFMCVRRDYFGSDVCLEY 354
              SFI   L D + ++ + I+IGEG     +    L   K  M      FG DV LEY
Sbjct: 300 TITSFIKEDLYDRLFIFLAPILIGEGIGIGDIGTSKLLDAKRHMLKSIYRFGDDVGLEY 358


>gi|254303903|ref|ZP_04971261.1| diaminohydroxyphosphoribosylaminopyrimidine/5-amino-6-(5-
           phosphoribosylamino)uracil reductase [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148324095|gb|EDK89345.1| diaminohydroxyphosphoribosylaminopyrimidine/5-amino-6-(5-
           phosphoribosylamino)uracil reductase [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 369

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 114/363 (31%), Positives = 195/363 (53%), Gaps = 15/363 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D ++M+ A+  ++  +G  + NP V  ++VKDG +IG G     G PHAEV AL EAGE
Sbjct: 5   LDEKYMARAIELAQKGIGGVNPNPLVGAVVVKDGKIIGEGWHKKFGGPHAEVWALNEAGE 64

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            A GAT YVTLEPCSH G++PPCA+ I+E GI+R VV   DP+  V+G+G++ + + GI 
Sbjct: 65  NAEGATIYVTLEPCSHQGKTPPCARRIVEAGIKRCVVACIDPNPLVAGKGMKIIEEAGID 124

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   ++E E K     +L     K  ++ LK  ++ D  I      S  IT  I++ +V 
Sbjct: 125 IKLGVLEKEAKDVNKIFLKYIENKVPYLFLKCGITLDGKIATRSGKSKWITNEIAREKVQ 184

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            LR +  AI+VGI TVL D+P L  RL+    G+++ +P R+++DP+ +  +++K +   
Sbjct: 185 FLRTKFMAIMVGINTVLKDNPSLDSRLDEEKFGIEKRNPFRVVIDPNLESPIEAKFLNFN 244

Query: 241 LLAPVIIVTENDDP--VLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGA 296
                IIVT +D+        + K     I+ + +  K   +L  L    + S+L+EGG+
Sbjct: 245 DN-KAIIVTSSDNKNLEKIKVYEKLGTKFIFLEGKTFKMEDILKELGKLEIDSVLLEGGS 303

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVC 351
            +  +     ++D+  ++ +  +IG+      +     +       F   + + +G ++ 
Sbjct: 304 ELISTAFKENIIDAGEIFIAPKIIGDNSAVPFINGFNFDSMEDVFKFSNPKFNIYGDNIS 363

Query: 352 LEY 354
           +E+
Sbjct: 364 IEF 366


>gi|229110810|ref|ZP_04240373.1| Riboflavin biosynthesis protein [Bacillus cereus Rock1-15]
 gi|228672689|gb|EEL27970.1| Riboflavin biosynthesis protein [Bacillus cereus Rock1-15]
          Length = 348

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 121/341 (35%), Positives = 185/341 (54%), Gaps = 10/341 (2%)

Query: 22  VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
            G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ RGAT YVTLEPCSH
Sbjct: 2   KGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQVRGATIYVTLEPCSH 61

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140
           +GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  + E E K     
Sbjct: 62  HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKVNEV 121

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R ++ AILVG  TV
Sbjct: 122 FNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRNENAAILVGANTV 181

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
             D+P LT R+      +P+RIILD   ++ +++ ++        I  T N      +A 
Sbjct: 182 QKDNPSLTTRIP--NGRNPIRIILDSTLRIPMEANVVTDGEAPTWIFTTSNHAAKKKIAL 239

Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
               + +         +L ++L +L  +GV+SLL+EGG  V  SFI ++L+D +ILY + 
Sbjct: 240 ENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIENKLMDKLILYVAP 299

Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
            +IG    PS +E   + K    +       DV    +GK+
Sbjct: 300 KIIGGRLAPSFVEGTGITKMQDAIEFK----DVSFTQVGKD 336


>gi|251796359|ref|YP_003011090.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. JDR-2]
 gi|247543985|gb|ACT01004.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. JDR-2]
          Length = 368

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 129/359 (35%), Positives = 198/359 (55%), Gaps = 9/359 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+ +MS AL  +    G T  NP V C++VKDG +IG G     G  HAEV AL+ AG+E
Sbjct: 6   DSYYMSLALELAAKASGQTGINPVVGCVVVKDGRIIGVGTHLKRGTGHAEVHALQMAGDE 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GAT YVTLEPCSHYG++PPC + II     RVVV   DP+ +V+GRG+  L ++GI +
Sbjct: 66  AEGATVYVTLEPCSHYGKTPPCCERIINAKAARVVVATTDPNPQVAGRGIARLREEGIEV 125

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E + +     +      +  ++TLK A + D  I      S  ITG  ++ QVH 
Sbjct: 126 EVGLLEEQSRSMNEKFNKYITSRLPYVTLKTASTLDGKIASHTGDSRWITGSTAREQVHT 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR Q +AI+VGIGT+LADDP+LT R      H P+RII+D   +L LD++++   L   +
Sbjct: 186 LRHQHEAIMVGIGTLLADDPQLTTRAAVPAIH-PVRIIVDSQLRLPLDARVVTDGLARTI 244

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD---LKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           ++ +   DP    A  +  + +I C   +   L + +  L    + S+L+EGG  +  + 
Sbjct: 245 VLASAKADPSREQALTEAGVEVIRCGDGEQVVLAEAMRKLGELEIGSILLEGGGKLNGAM 304

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           + + L+D I++Y +  +IG    P        EK    +  D+    V +E  G+++C+
Sbjct: 305 LEAGLIDKIMIYMAVKIIGGLDSPGTFTFAGFEKMSEAIELDH----VKVEMAGEDICI 359


>gi|76798747|ref|ZP_00780965.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
           18RS21]
 gi|76585902|gb|EAO62442.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
           18RS21]
          Length = 362

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 115/353 (32%), Positives = 187/353 (52%), Gaps = 12/353 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ +   +G  + NP V  +IVKD  +I +G     G  HAE QA++ A E+  G+
Sbjct: 1   MALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDISGS 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPC H G+ PPC + +I+ GI++VVV   DP+  VSG+G+  L ++G+ +   +
Sbjct: 61  TLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVEVGI 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +  E       ++     K+  + LK A++ D  I      S  I+   S+  V  LR +
Sbjct: 121 LREECDALNERFIFHMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKLRQK 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
             AI+VGI TVLAD+P LTCR+   +    +RI+ D   K+ LDS ++K+A   P  I T
Sbjct: 181 CSAIMVGINTVLADNPRLTCRIPKGEAL--VRIVCDSQLKIPLDSYLVKSAKTIPTWIAT 238

Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
            +D+       ++    +I    +    DLK L+TIL   G+ SLL+EGG+++  S + +
Sbjct: 239 CSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQEGIDSLLIEGGSSLHFSALKA 298

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLE 353
            +V+ +I++ +  +IG     + +    L+          +      SDV +E
Sbjct: 299 GIVNRLIVFIAPKIIGGLKAKTAISGEGLDWLNQAFRVKDIELSRMDSDVVIE 351


>gi|271499575|ref|YP_003332600.1| riboflavin biosynthesis protein RibD [Dickeya dadantii Ech586]
 gi|270343130|gb|ACZ75895.1| riboflavin biosynthesis protein RibD [Dickeya dadantii Ech586]
          Length = 370

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 120/367 (32%), Positives = 183/367 (49%), Gaps = 18/367 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL  +R     T+ NP+V C+IV+DG ++G G     G PHAEV AL  AG++
Sbjct: 6   DEFYMARALELARRGRFTTAPNPNVGCVIVRDGEIVGEGYHQKAGEPHAEVHALRMAGDK 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+ +V+GRGL  L Q GI +
Sbjct: 66  ARGATAYVTLEPCSHHGRTPPCADALVAAGVARVVAAMQDPNPQVAGRGLHRLQQAGIAV 125

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++  + +     +L R      ++ LK+  S D    MA   S  IT   S+  V  
Sbjct: 126 QHGVLMDQAEKINRGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQSRQDVQR 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP LT R + L               P+R+I+D   +++   
Sbjct: 186 FRAQSAAILSSSATVLADDPSLTVRWSELDADTQRLYPQSAVRQPVRVIVDSQSRVTPQH 245

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           +++         +   + D        ++    ++    DL  L+  L  R + ++ VE 
Sbjct: 246 RLVSQPGQ--TWLARASQDAQSWPDGVEQLTMPLHGGGIDLVALMMTLGKRQINTVWVEA 303

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           GA +A + + + +VD +I+Y +  ++G+          LE+      F        G DV
Sbjct: 304 GAHLAGALLQAGVVDELIVYLAPTLLGDAARSLCVLPGLEQLSQAPMFEMTDVRQIGPDV 363

Query: 351 CLEYIGK 357
            L    +
Sbjct: 364 RLTLKPR 370


>gi|332967791|gb|EGK06895.1| riboflavin biosynthesis protein RibD [Kingella kingae ATCC 23330]
          Length = 360

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 126/358 (35%), Positives = 187/358 (52%), Gaps = 12/358 (3%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             +  D + M  AL  +      TS NP V C+I     +IG+G     G PHAEV A+ 
Sbjct: 3   TFNPQDTQHMQRALELAWQGRFSTSPNPRVGCVIAHGSQIIGQGFHVQAGSPHAEVHAIR 62

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +AGE ARGATAYVTLEPCSHYGR+PPCA+ +I  G+ RVV  + DP+  V+G+GL  L  
Sbjct: 63  QAGELARGATAYVTLEPCSHYGRTPPCAEGLIAAGVSRVVAAMTDPNPLVAGKGLAMLQA 122

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +   ++E E +     +L+R    R  ++LKIA S D    ++   S  ITG  ++
Sbjct: 123 AGIMVEQGLLEHEARQLNRGFLSRIERNRPFVSLKIAASLDGKTALSNGQSQWITGAAAR 182

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             V + RAQS A+L GIGTVLAD+P L  R +      P+R++LD   +    S II+  
Sbjct: 183 ADVQIQRAQSCAVLTGIGTVLADNPRLNVR-DFPTVRQPLRVVLDSQLRTPKSSHIIQDG 241

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVA 299
               +I  +    P         N+ I        L ++L  L  RG+  L++E G+ +A
Sbjct: 242 QRTLIITTS----PDTQKFATYANVEISKQPAPISLPEVLHELAQRGIGELMIEAGSHLA 297

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKN--FMCVRRDYFGSDVCL 352
            +F+   L+D I+ Y++  ++G+    +   P  +  L +N  +  V  D  G D+  
Sbjct: 298 SAFLQQDLLDEIVYYQAPKLLGDTARGAFLLPENDDMLRQNPAWQTVSLDRVGDDIKW 355


>gi|170717790|ref|YP_001784854.1| riboflavin biosynthesis protein RibD [Haemophilus somnus 2336]
 gi|168825919|gb|ACA31290.1| riboflavin biosynthesis protein RibD [Haemophilus somnus 2336]
          Length = 376

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 128/371 (34%), Positives = 191/371 (51%), Gaps = 21/371 (5%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             S+ D  FM  AL  ++  +  T+ NP+V C++VK+G ++GRG     G PHAEV AL 
Sbjct: 4   TFSAQDEYFMQIALDLAKKGIFTTTPNPAVGCVLVKNGEIVGRGFHFKAGQPHAEVMALR 63

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +AG+ A+GATAYVTLEPCSH+GR+PPCAQ +IE GIR V+V + DP+ +V+G+GL  L  
Sbjct: 64  DAGDRAKGATAYVTLEPCSHFGRTPPCAQGLIEAGIRNVIVAMKDPNPQVAGKGLAMLQA 123

Query: 122 KGIIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI     +  E        +LTR   ++  + LK+A+S D    MA   S  I+G  ++
Sbjct: 124 AGIESAVGLLQEKAELLNKGFLTRMRTQKPFVILKMAISLDGRTAMANGESKWISGEQAR 183

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFK 229
             V   RA+  AIL    TVLADDP L  R                   P+RIILD    
Sbjct: 184 QDVQQERAKVSAILSTAKTVLADDPLLNLRWEQFPSELQQNYKVEDVRQPVRIILDRQHL 243

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVT 288
           ++   K+ +    +PV +V + +  + A     + I +   +    L+ LL  L  R + 
Sbjct: 244 VTPRHKLFQ--CQSPVWLVGDKERDMSAFPDYCQYIKLFPSNEHSYLENLLIELAKRQIN 301

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRR 343
           SL +E G  +A +FI   LV+ +I+Y +  ++G        +P  L+       +  +  
Sbjct: 302 SLWLEAGETLAGAFIEENLVNELIIYMAPKLLGNKARGFCHLPH-LKRLADAPKWQLLSL 360

Query: 344 DYFGSDVCLEY 354
              G D+ L Y
Sbjct: 361 AQIGEDIKLNY 371


>gi|227821532|ref|YP_002825502.1| riboflavin biosynthesis protein RibD [Sinorhizobium fredii NGR234]
 gi|227340531|gb|ACP24749.1| riboflavin biosynthesis protein RibD [Sinorhizobium fredii NGR234]
          Length = 367

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 181/363 (49%), Positives = 238/363 (65%), Gaps = 3/363 (0%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           +  D RFM+AALR +R ++GLTSTNPSV C+IVKD  ++GR VTA GG PHAE QAL +A
Sbjct: 5   TREDERFMAAALRLARRNLGLTSTNPSVGCVIVKDDTIVGRAVTAPGGRPHAETQALADA 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE+ARGATAYVTLEPCSH+GR+PPC   +I  GI RVVVC+ DPD RV+GRG+  L   G
Sbjct: 65  GEQARGATAYVTLEPCSHHGRTPPCVDALIASGIARVVVCLLDPDERVAGRGVVMLRDAG 124

Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I VD  ++  EG+  L AYL RQ  KR H+TLK+AVS D MIG  G G V ITG +S+ Q
Sbjct: 125 IDVDLGVLRDEGERVLEAYLMRQRMKRPHVTLKLAVSADGMIGRKGEGQVRITGAVSRAQ 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           V +LRA++DAILVG+GT  ADDPELT RL GL+  SP+RI+LD    L+++SK++++A  
Sbjct: 185 VQVLRAETDAILVGVGTANADDPELTVRLPGLEARSPIRIVLDRRLDLAVESKLVRSARA 244

Query: 243 APVIIVTEN--DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
                V ++  D P +      +   +   +   +  LL  L  RG++SLLVEGGA  A 
Sbjct: 245 VLSFAVADSVLDAPAMTRRSTLEEAGVEVLNADTIYDLLIALASRGISSLLVEGGARAAR 304

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
            F+++ LVD I+LY     IGE GI SP +   +   F   R   +G+D+  +Y   + C
Sbjct: 305 QFLDAGLVDRILLYTGPATIGEDGIRSPFDRMTVPAGFSLKRTARYGNDIFDDYERDSGC 364

Query: 361 LQE 363
            Q 
Sbjct: 365 SQA 367


>gi|77409347|ref|ZP_00786049.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
           COH1]
 gi|77172049|gb|EAO75216.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
           COH1]
          Length = 362

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 115/353 (32%), Positives = 187/353 (52%), Gaps = 12/353 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ +   +G  + NP V  +IVKD  +I +G     G  HAE QA++ A E+  G+
Sbjct: 1   MALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDISGS 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPC H G+ PPC + +I+ GI++VVV   DP+  VSG+G+  L ++G+ +   +
Sbjct: 61  TLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVEVGI 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +  E       ++     K+  + LK A++ D  I      S  I+   S+  V  LR +
Sbjct: 121 LREECDALNERFIFHMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKLRQK 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
             AI+VGI TVLAD+P LTCR+   +    +RI+ D   K+ LDS ++K+A   P  I T
Sbjct: 181 CSAIMVGINTVLADNPRLTCRIPKGEAL--VRIVCDSQLKIPLDSYLVKSAKTIPTWIAT 238

Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
            +D+       ++    +I    +    DLK L+TIL   G+ SLL+EGG+++  S + +
Sbjct: 239 CSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQEGIDSLLIEGGSSLHFSALEA 298

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLE 353
            +V+ +I++ +  +IG     + +    L+          +      SDV +E
Sbjct: 299 GIVNRLIVFIAPKIIGGLKAKTAISGEGLDWLNQAFRVKDIELSRMDSDVVIE 351


>gi|157369315|ref|YP_001477304.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Serratia proteamaculans 568]
 gi|157321079|gb|ABV40176.1| riboflavin biosynthesis protein RibD [Serratia proteamaculans 568]
          Length = 369

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     T+ NP+V C+IV+DG ++G G     G PHAEV AL  AGE+
Sbjct: 4   DEFYMARAFELARLGRFTTAPNPNVGCVIVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q G+ +
Sbjct: 64  ARGATAYVTLEPCSHHGRTPPCADALVAAGVARVVAAMQDPNPEVAGRGLYKLQQAGLDV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R      ++ LK+  S D    MA   S  IT   ++  V  
Sbjct: 124 RHGLMLAEAESVNLGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L               P+RIILD   +++   
Sbjct: 184 LRAQSAAILSTSATVLADDPSLTVRWDELDAETQSIYPRENLRQPLRIILDSQNRVTPQH 243

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           ++++        +     D  +     ++     +    DL  ++  L  R V S+ VE 
Sbjct: 244 RVVQQPGQ--TWLARLQPDEQIWPQDVEQLTFPAHGGGVDLVVMMMQLAKRQVNSIWVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           GA +A + + + LVD +ILY +  ++G+ G        LE       F+       G D+
Sbjct: 302 GAQLAGALLQAGLVDELILYIAPKLLGDNGRGLCHLPGLEHLTDAPEFVFSEVRQIGPDL 361

Query: 351 CLEYIGK 357
            L    K
Sbjct: 362 RLRLKAK 368


>gi|148380824|ref|YP_001255365.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A str.
           ATCC 3502]
 gi|153933315|ref|YP_001385131.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A str.
           ATCC 19397]
 gi|153935215|ref|YP_001388600.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A str.
           Hall]
 gi|148290308|emb|CAL84432.1| riboflavin biosynthesis protein ribd [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           and 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Clostridium botulinum A str. ATCC 3502]
 gi|152929359|gb|ABS34859.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A str.
           ATCC 19397]
 gi|152931129|gb|ABS36628.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A str.
           Hall]
          Length = 365

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 115/358 (32%), Positives = 189/358 (52%), Gaps = 15/358 (4%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
            +M  AL+ +    G  + NP V  ++V +  +IG G   Y G PHAEV AL+EAGE+A+
Sbjct: 6   FYMEKALKLAERGEGKVNPNPKVGAIVVNNNKIIGEGYHKYFGGPHAEVYALKEAGEKAK 65

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GAT YVTLEPCSHYG++PPCA+ I++ GI + ++ + DP+  V GRG+  L Q GI ++ 
Sbjct: 66  GATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVIT 125

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            +ME E K     ++    +K+  + LK A + D  I      S  ITG  ++ +VH +R
Sbjct: 126 GIMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATKTGESKWITGEEARYKVHQIR 185

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
                I+VGIGT++ D+P L  R+   +  SP  II+D   ++ L+SKI++T     + I
Sbjct: 186 NDLSGIMVGIGTIIKDNPLLNTRIE--RGRSPKAIIVDSSLRIPLESKILETLNERTIYI 243

Query: 248 VTENDDP--VLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAH 300
            T           A       ++  +  +     L +L+  L   GV S+L+EGG+ +  
Sbjct: 244 ATTKKHNNFSKKNALENLGAKVLEFEENEEGKVPLNELMQYLGSEGVDSILLEGGSTLNF 303

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
           S +   +VD ++ + +  ++G     + +    +E      N   ++ +  G D+ +E
Sbjct: 304 SALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVESLKDIFNLQNLKFEKIGQDILIE 361


>gi|315125800|ref|YP_004067803.1| riboflavin biosynthesis protein [Pseudoalteromonas sp. SM9913]
 gi|315014314|gb|ADT67652.1| riboflavin biosynthesis protein [Pseudoalteromonas sp. SM9913]
          Length = 375

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 116/371 (31%), Positives = 182/371 (49%), Gaps = 18/371 (4%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             S  D R+M+ A+  ++     T+ NP+V C++VK+  +IG G     G  HAEV AL 
Sbjct: 6   SFSEDDKRYMARAIELAKKGRFTTTPNPNVGCVLVKNNKIIGEGFHRLAGQGHAEVNALT 65

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AGE A+GATAYVTLEPCSHYGR+PPCA+ +   G+++V+  + D + +V+G+GL+ L+ 
Sbjct: 66  MAGENAKGATAYVTLEPCSHYGRTPPCAEGLKAAGVKKVIAAMVDSNPQVAGKGLKILAD 125

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +   ++E++ +     +  R  +    +T K+A S D    +    S  ITG  ++
Sbjct: 126 AGIEVAYGLLEAQARALNFGFFKRMEQGLPFVTCKMAASIDGKTALKNGQSKWITGPAAR 185

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--------HSPMRIILDPHFKLSL 232
             V L RAQS AIL G  TVL DD +L  R   L            P+R+++D   +L+ 
Sbjct: 186 QDVQLYRAQSCAILTGADTVLMDDAKLNVRPEELPYSLPTDLPLRQPVRVVIDSQNRLTP 245

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLL 291
           D  +   ++ + VII T   D         K I +   + + DL  +L  L      ++ 
Sbjct: 246 DLALF--SIQSEVIIFTTKVDKSHQWPHFVKQIEVPENNNKVDLLAVLHTLAQLQFNNVW 303

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYF 346
           +E GA +A       L+D  + Y +  ++G     S L    L       N         
Sbjct: 304 LEAGATLAGKMTELDLIDEFVFYIAPKLMGSD-AKSLLNFPELMSMQNTINLTFNECVPI 362

Query: 347 GSDVCLEYIGK 357
           G D+ +  + K
Sbjct: 363 GDDLRITALKK 373


>gi|114046668|ref|YP_737218.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Shewanella sp. MR-7]
 gi|113888110|gb|ABI42161.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Shewanella sp. MR-7]
          Length = 381

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 129/374 (34%), Positives = 191/374 (51%), Gaps = 22/374 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S  D + MS A++ +R     T  NPSV C+IVKD  ++G G     G PHAEV AL
Sbjct: 1   MNWSELDNQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE ARGATAYVTLEPCSHYGR+PPCA  +I  G++RVVV V+DP+ +V GRG+Q L 
Sbjct: 61  RMAGELARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLR 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI +   +   E       ++ R       +T+K+A S D    ++   S  ITG  +
Sbjct: 121 DAGIQVDVGLHRDEAYALNLGFMKRMESGLPWVTVKLAASLDGKTALSNGVSKWITGPEA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR----------LNGLQEHSPMRIILDPHFK 229
           +  V  LR ++ A++ GI TVLADDP L  R          L+  Q   P+R+ILD   +
Sbjct: 181 RRDVQRLRIRACALVTGIDTVLADDPSLNVRYSELGSLNSLLSEAQILQPLRVILDSRCR 240

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGR 285
           + + + ++  A+ +P+++V+        +A    ++  +     D    L  LL+ L  +
Sbjct: 241 MPIKAALL--AIESPILLVSTEPYSPAFMAQLPSHVTCLQLPAIDGRISLPTLLSYLG-K 297

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCV 341
               +L+E GA +A +FI + L D ++LY++  V+G  G        Y           V
Sbjct: 298 SCNQVLIEAGATLAGAFIGAGLADELVLYQAMKVLGAQGRNLLELPDYQMMADIPTLKLV 357

Query: 342 RRDYFGSDVCLEYI 355
                G+D      
Sbjct: 358 DERKVGADTRFTLR 371


>gi|282883344|ref|ZP_06291938.1| riboflavin biosynthesis protein RibD [Peptoniphilus lacrimalis
           315-B]
 gi|281296848|gb|EFA89350.1| riboflavin biosynthesis protein RibD [Peptoniphilus lacrimalis
           315-B]
          Length = 372

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 127/364 (34%), Positives = 198/364 (54%), Gaps = 17/364 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
           +MS A+  +    G T TNP V C+IV D  +IGRG     G  HAE  A+E+A   GE 
Sbjct: 10  YMSLAMDLAEKGKGFTLTNPMVGCVIVNDDRIIGRGYHKKFGDLHAETMAIEDAQKNGES 69

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             G+T YV LEPC HYG+ PPC + IIE  I++VV+   DP+ +VSG+G++ L   GI +
Sbjct: 70  LEGSTLYVNLEPCCHYGKQPPCTKAIIENKIKKVVIANVDPNKKVSGKGIKTLEDAGIEV 129

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V+ +ME EG      +      +R  +T+K A++ D  I      S  I+  IS++ VH 
Sbjct: 130 VEGIMEEEGLKLNEEFFHFIKTQRPFVTMKSAMTLDGKIASVTGDSKWISSQISRDYVHK 189

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRA+++AI+VGIGTVL DDP L  R+ G    +P +I++D   ++ LD+K++ ++    +
Sbjct: 190 LRAENNAIMVGIGTVLKDDPSLNVRIYG-NYKNPTKILVDSKLRIPLDAKLLSSSDAPTI 248

Query: 246 IIVTENDDPVLALAFRK-KNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300
           I  TE  D       ++  N++I+ C  +    DL  L + L    + S+L+EGG  + +
Sbjct: 249 IACTEGYDTEKYNKLKEMANVHILLCKKKDGRVDLLDLFSKLKDFDICSVLLEGGGNLNY 308

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-----GSDVCLE-Y 354
           S +   LVD +I +    +IG  G+ SP+    +      ++   F     G D+ +  Y
Sbjct: 309 SMLRENLVDRLIFFIGPKIIGGSGL-SPVAGEGISLMKDAIKIKDFQVEKMGQDILINAY 367

Query: 355 IGKN 358
           + K 
Sbjct: 368 VDKE 371


>gi|113969440|ref|YP_733233.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Shewanella sp. MR-4]
 gi|113884124|gb|ABI38176.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Shewanella sp. MR-4]
          Length = 381

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 128/374 (34%), Positives = 190/374 (50%), Gaps = 22/374 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S  D + MS A++ +R     T  NPSV C+IVKD  ++G G     G PHAEV AL
Sbjct: 1   MNWSELDNQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE ARGATAYVTLEPCSHYGR+PPCA  +I  G++RVVV V+DP+ +V GRG+Q L 
Sbjct: 61  RMAGELARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLR 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI +   +   E       ++ R       +T+K+A S D    ++   S  ITG  +
Sbjct: 121 DAGIQVDVGLHRDEAYALNLGFMKRMESGLPWVTVKLAASLDGKTALSNGVSKWITGPEA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR----------LNGLQEHSPMRIILDPHFK 229
           +  V  LR ++ A++ GI TVLADDP L  R          L+  Q   P+R+ILD   +
Sbjct: 181 RRDVQRLRLRACALVTGIDTVLADDPSLNVRYSELGSLSSQLSEAQILQPLRVILDSRCR 240

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGR 285
           + + + ++  A+ +P+++V+        +A    ++  +     D    L  LL+ L  +
Sbjct: 241 MPITAALL--AIESPMLLVSTEPYSPAFMAQLPAHVTCLQLPAIDGRISLPALLSYLG-K 297

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCV 341
               +L+E GA +A +FI   L D ++LY++  ++G  G        Y           V
Sbjct: 298 SCNQVLIEAGATLAGAFIGDGLADELVLYQAMKILGAQGRNLLELPDYQMMADIPTLKLV 357

Query: 342 RRDYFGSDVCLEYI 355
                G+D      
Sbjct: 358 DERKVGADTRFTLR 371


>gi|226314399|ref|YP_002774295.1| riboflavin biosynthesis protein RibD [Brevibacillus brevis NBRC
           100599]
 gi|226097349|dbj|BAH45791.1| riboflavin biosynthesis protein RibD [Brevibacillus brevis NBRC
           100599]
          Length = 368

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 133/357 (37%), Positives = 194/357 (54%), Gaps = 7/357 (1%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D+++M  AL  +R   G TS NP V  +IVKDG ++G G     G PHAEV AL  AG
Sbjct: 2   EQDSKYMDLALELARSARGQTSPNPMVGAVIVKDGTIVGMGAHLRAGEPHAEVHALRMAG 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E+A+GAT YVTLEPCSHYG++PPCA+ +I   +RRVVV   DP+  V+GRG++ L   G+
Sbjct: 62  EKAQGATVYVTLEPCSHYGKTPPCAEALIAAAVRRVVVATLDPNPLVAGRGMEMLRAAGV 121

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   + E E K     +      +R  +T+K A + D  I      S  ITG  ++ +V
Sbjct: 122 EVAVGVREEEAKALNEVFFHYIQTRRPFVTVKTASTLDGKIASFTGHSRWITGAEARAEV 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTALL 242
           H LR Q DAILVG+GT+LADDP LT R    +    P+R+ILD   +  LD+ +++ A  
Sbjct: 182 HELRRQHDAILVGVGTILADDPLLTARQEEQRFGSQPVRVILDSQLRTPLDAHVVQNADA 241

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTSLLVEGGAAVAHS 301
              I  T+            + + +I       ++K+L  L   G+TSLLVEGG  V  S
Sbjct: 242 KTWIFATDTAPKEKQELLAARGVKVITTAGPIRVEKVLDTLGELGITSLLVEGGQEVNGS 301

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           F+ +R +  ++ + +  +IG    PSP       + F  +      ++V +  IGK+
Sbjct: 302 FLQARAIQKVVSHIALKLIGGSSAPSPFGG----QGFSTMGEAVQLANVTITPIGKS 354


>gi|294783803|ref|ZP_06749125.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 1_1_41FAA]
 gi|294479615|gb|EFG27394.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 1_1_41FAA]
          Length = 369

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 198/365 (54%), Gaps = 17/365 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D +FM+ A+  +   +G  + NP V  ++VKDG +IG G     G PHAEV AL EAG
Sbjct: 4   TVDEKFMARAIELAFRGLGGVNPNPLVGAVVVKDGKIIGEGWHKKYGGPHAEVWALNEAG 63

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           EEA+GAT YVTLEPCSH G++PPCA+ I+E GI+R V+   DP+  V+G+G++ +   GI
Sbjct: 64  EEAKGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVIACVDPNPLVAGKGIKIIEDAGI 123

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++E E K     +L     K  ++ LK  ++ D  I      S  IT  +++ +V
Sbjct: 124 KVDFGILEKEAKEVNKVFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNELAREKV 183

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKT 239
             LR +  AI+VGI TVL D+P L  RL+    G+++ +P R+++DP+ +  +DSK +  
Sbjct: 184 QFLRTKFSAIMVGINTVLKDNPSLDSRLDEEKFGIEKRNPFRVVVDPNLESPIDSKFLHF 243

Query: 240 ALLAPVIIVTENDDP--VLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGG 295
                 IIVT ND+        +      +IY + +  K   +L  L    + S+L+EGG
Sbjct: 244 NDN-KAIIVTSNDNRNLEKVKEYENLGTRLIYLEGKIFKMEDILKELGKLNIDSVLLEGG 302

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV------RRDYFGSD 349
           + +  +     ++D+  ++ +  +IG+     P   G+   +   V      + + +G +
Sbjct: 303 SGLISTAFKENVIDAGEIFIAPKIIGD-NSSIPFISGFNFNSMEEVFKLSNPKFNIYGDN 361

Query: 350 VCLEY 354
           + +E+
Sbjct: 362 ISIEF 366


>gi|149179738|ref|ZP_01858243.1| riboflavin biosynthesis protein RibD [Bacillus sp. SG-1]
 gi|148851930|gb|EDL66075.1| riboflavin biosynthesis protein RibD [Bacillus sp. SG-1]
          Length = 363

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 110/355 (30%), Positives = 172/355 (48%), Gaps = 9/355 (2%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            +  +M  AL  ++   G T+ NP+V  ++VKDG ++G G     G PHAEV A+ +AG 
Sbjct: 2   QEQEYMKLALSLAKAGKGQTAPNPAVGAVVVKDGEIVGMGAHLKAGDPHAEVHAIRQAGS 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A GA  YVTLEPC+H G++PPCA  I+E  ++RV +   DP+  V+G+G+  L + GI 
Sbjct: 62  KAEGADIYVTLEPCAHTGKTPPCANLIVENKLKRVFIASVDPNPLVAGKGIDILERAGIE 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V  + E E       +      K  ++TLK AV+ D         S  IT   S+  VH
Sbjct: 122 VVTGICEKEALELNAHFFHFIQTKTPYVTLKSAVTLDGKTAAYTGDSKWITSEESRLDVH 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             R   DAILVG+ TV+ D+P LT RL      +P+R++LD H ++ L+S I+       
Sbjct: 182 KYRHHHDAILVGVNTVINDNPLLTTRLP-RGGKNPIRVVLDSHLRIPLESDILNIEHAKT 240

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLLVEGGAAVAHSF 302
           +I                K + +   +   L    +L  L    VTSL VEGG+A+  SF
Sbjct: 241 IIFCGSEASEEKKGMLLNKGVRVEQLESPKLPVKMVLQRLGELNVTSLFVEGGSAIHFSF 300

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
           +  +    +++Y +  ++G     +                     +  G D+ +
Sbjct: 301 LKEKAYQEVVIYMAPKLVGGSEAFTSFGGHGFPSIAEGDELEFSSIEKIGKDIKI 355


>gi|319407322|emb|CBI80963.1| Riboflavin biosynthesis protein ribD [Bartonella sp. 1-1C]
          Length = 374

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 157/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAE 56
           M  +  D RFM+AA+R +  H+GLT  NPSV  LIV++      ++G GVTA  G PHAE
Sbjct: 1   MDKAEQDKRFMAAAIRLAERHIGLTGENPSVGALIVQNKGAGASIVGYGVTALQGRPHAE 60

Query: 57  VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           VQAL  AG  A GATAYVTLEPCSHYG + PC   +I  GI RVV+ + DPD RV G G+
Sbjct: 61  VQALLMAGPLAYGATAYVTLEPCSHYGETSPCVNALINSGITRVVIALSDPDQRVYGCGI 120

Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
             L   GI +V+ ++  E    L AYL  +  +R  +TLK+A+S DN IG  G GSV I+
Sbjct: 121 ALLRAAGIEVVEGVLADEAFETLSAYLCVKKLQRCEVTLKMAISADNGIGKKGKGSVRIS 180

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
           G IS+ Q H+LRAQ++ I+VGIGT+LADDP+L CRL GL+  SP+R+ILD   ++ L +K
Sbjct: 181 GEISRTQTHILRAQNNVIMVGIGTILADDPQLDCRLPGLEIRSPIRVILDKDLRIPLCAK 240

Query: 236 IIKTALLAPVIIV--TENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTS 289
           +++TA   P  ++  T +      +A  +  + I   +  +       +L +L  R + S
Sbjct: 241 VVQTAANIPTWVICSTASSKKRKKIALEQCGVTICSVNTNNNLLSPFAILQLLYQRKINS 300

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           +L+EGGA     F+++  VD +I + + I++G+  I +P  + YL + F  V     G+D
Sbjct: 301 VLLEGGAKTGKIFLDAGCVDCLICFYAPILLGKDRIKAPHFQSYLSE-FNEVEMRMLGND 359

Query: 350 VCLEYIGKNLCLQE 363
              ++  K LC Q 
Sbjct: 360 RLYKWRRKILCSQG 373


>gi|170760325|ref|YP_001788192.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169407314|gb|ACA55725.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 365

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 120/358 (33%), Positives = 191/358 (53%), Gaps = 15/358 (4%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
            +M  AL+ +    G  + NP V  ++VK+  +IG G   Y G PHAEV AL EA E+A+
Sbjct: 6   FYMEKALKLAERGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGPHAEVYALREASEKAK 65

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GAT Y+TLEPCSHYG++PPCA++I++ GI + ++ + DP+  V GRG+  L Q GI +V 
Sbjct: 66  GATMYITLEPCSHYGKTPPCAEYIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVT 125

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            +ME E K     ++    +K+  + LK A + D  I      S  ITG  ++++V  +R
Sbjct: 126 EIMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATRTGESKWITGEEARHKVQQIR 185

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
                I+VGI TV+ DDP LT R+ G    SP  II+D + ++ L+SKI++T     + I
Sbjct: 186 NDLSGIMVGIDTVIKDDPLLTTRIEG--GRSPKAIIVDSNLRIPLESKILETLSKRAIYI 243

Query: 248 VTEN--DDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAAVAH 300
            T     +P    A       ++  +        L KL+  L   GV S+L+EGG+ +  
Sbjct: 244 ATTKKHKNPSKKNALENLGAKVLEFEENQEGKVPLNKLMQYLGSEGVDSILLEGGSTLNF 303

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
           S +   +VD I+ + +  ++G     + +    +E      N   ++ +  G D+ +E
Sbjct: 304 SALKEGIVDKIMCFIAPKIMGGQDSKTMIGGTGIESLKDIFNLQNLKFEKIGQDILIE 361


>gi|187932958|ref|YP_001885493.1| riboflavin biosynthesis protein RibD [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721111|gb|ACD22332.1| riboflavin biosynthesis protein RibD [Clostridium botulinum B str.
           Eklund 17B]
          Length = 378

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 113/367 (30%), Positives = 186/367 (50%), Gaps = 11/367 (2%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
            VS  +  +M  AL  ++  +G  + NP V  +IVKD  +IG G   Y G  HAEV A+ 
Sbjct: 12  KVSLVNEEYMDLALELAKKGIGKVNPNPLVGAVIVKDNEIIGTGYHEYYGGAHAEVDAIN 71

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
              +   G+T Y+TLEPC+HYG++PPC   IIE  I++VV+ + DP+  VSG+ ++ L +
Sbjct: 72  NTTKSLEGSTIYITLEPCAHYGKTPPCVNLIIEKKIKKVVIGMLDPNPMVSGKSVKKLKE 131

Query: 122 KGIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
             I V   +E E       +++         + LK A+S D  I  +   S  IT   ++
Sbjct: 132 NDIEVIVGVEEEKCKKLNESFIKYITSNLPFVILKSAISLDGKIATSIGESKWITSKEAR 191

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              HLLR +  AI+VG+ T++ D+PELTCR+      +P+RI++D   ++ L SK+IK  
Sbjct: 192 IDGHLLRNKLSAIMVGVNTIIKDNPELTCRIE--NGRNPIRIVVDSTLRIPLSSKVIKNY 249

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGA 296
               +I  T+  D +       +N+N+I         DLK+L+  L    + S+L+EGG 
Sbjct: 250 DGLTIIATTKYADKLKKEKLVGRNVNVIEIIDKNKKVDLKELMRYLGTLKIDSILIEGGG 309

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
            +  S +   +VD +  Y +  ++G     S +      K    V+      D+  E + 
Sbjct: 310 TLNFSALEENIVDKVRFYIAPKILGGETSKSSIGGQGFSKLSDAVKLK----DLTYEKLS 365

Query: 357 KNLCLQE 363
           + + ++ 
Sbjct: 366 EEIVIEG 372


>gi|111657939|ref|ZP_01408648.1| hypothetical protein SpneT_02000888 [Streptococcus pneumoniae
           TIGR4]
          Length = 360

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 117/363 (32%), Positives = 183/363 (50%), Gaps = 13/363 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A++ ++   G  + NP V  +IVKD  +IG+G   + G PHAE  AL+   E   GA
Sbjct: 1   MKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRESPVGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + +   +
Sbjct: 61  TLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQVTVGI 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E+E    + ++     +   ++ +K A+S D  I      S  IT   ++  VH LR  
Sbjct: 121 LENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQLRHH 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
             AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA      I T
Sbjct: 181 VSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKTYIAT 238

Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
            ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S +  
Sbjct: 239 SSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWSALEQ 298

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIGKNLC 360
           ++VD + +Y +  V G      P+    +      +R         G+D  +E      C
Sbjct: 299 QIVDELKIYIAPKVFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEVIYPC 357

Query: 361 LQE 363
            QE
Sbjct: 358 SQE 360


>gi|320120555|gb|EFE28957.2| riboflavin biosynthesis protein RibD [Filifactor alocis ATCC 35896]
          Length = 364

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 123/359 (34%), Positives = 175/359 (48%), Gaps = 11/359 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           F   +M  A+  ++   G  S NP V  +IVKD I+IG G     G  HAE +AL+    
Sbjct: 3   FHETYMKTAIELAKKGEGYVSPNPLVGAVIVKDDIIIGSGYHTKYGGLHAEREALKNCRT 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
             +GA+ YVTLEPCSHYG+ PPCA  IIE GI  V +   DP+  V+G+G+Q L    I 
Sbjct: 63  SPKGASMYVTLEPCSHYGKQPPCALAIIESGIDTVYIGSSDPNPEVNGKGIQVLRDANIK 122

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V  +++ E       +       R ++TLK A++ D  I      S  ITG  ++ QVH
Sbjct: 123 VVTGLLKEECDSLNTFFFHYIATNRPYVTLKFAMTIDGKIASHSGKSQWITGESARAQVH 182

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             R +  AI+VG+GTV  D+P L CR       SP+RII D   +  ++SKI++T+   P
Sbjct: 183 RDRKRYQAIMVGVGTVFQDNPVLNCRTKE-NPVSPIRIICDTKLRTPMNSKIVQTSKEIP 241

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300
             + T   D      +     +I+    +    DL  L+  L   G+ SL VEGG  +  
Sbjct: 242 TYLATCCTDKSKHSPYEMYGCSILVTKQQNGHIDLNDLMQQLGKIGIDSLFVEGGGTLNW 301

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSP-LEEGYLEKN----FMCVRRDYFGSDVCLEY 354
           S +   LV+ I  Y    V+G     +  L  G+   N    F       F  D+ LEY
Sbjct: 302 SLLQENLVNHIQCYIGNKVLGGQSAKTAILGTGFDTPNDSPAFKLSNIMCFDEDILLEY 360


>gi|110835035|ref|YP_693894.1| (S)-2-hydroxy-fatty-acid dehydrogenase [Alcanivorax borkumensis
           SK2]
 gi|110648146|emb|CAL17622.1| (S)-2-hydroxy-fatty-acid dehydrogenase [Alcanivorax borkumensis
           SK2]
          Length = 377

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 129/378 (34%), Positives = 192/378 (50%), Gaps = 24/378 (6%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S+ D ++M+ AL+ +R  +  T  NP V C++V+DG V+G G  A  G PHAE  AL
Sbjct: 1   MSFSAADHQYMARALQLARRGLYTTDPNPRVGCVLVRDGAVVGEGFHARAGTPHAERHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AGE ARGATAYVTLEPCSH GR+ PCA  +I+ G+ RVV  ++DP+  V+G+GLQ L+
Sbjct: 61  AQAGERARGATAYVTLEPCSHTGRTGPCADALIDAGVTRVVAAMEDPNPLVAGQGLQRLA 120

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI     ++E+E +     +++R   +R +I +KIA S D    MA   S  ITG  +
Sbjct: 121 DAGIATAVGLLEAEARALNPGFVSRMTRQRPYIRIKIAASVDGRTAMANGESQWITGPAA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-------------EHSPMRIILDP 226
           +  V  LRA+S A++ G+GTVLAD P  T R    +                P+R+ILD 
Sbjct: 181 REDVQRLRARSSAVITGVGTVLADRPSYTVRPRQWRLAEYRQHAADDDWVRQPLRVILDR 240

Query: 227 HFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTIL 282
             +   D  ++  + L   ++V     P    A       ++         DL++LL  L
Sbjct: 241 TLRTPPDVPVV--SALGHCLLVAGEQHPGRQNALESAGAEVMLLPASGSGIDLQQLLIEL 298

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNF 338
             R    +LVE GA +A +F+   L D I++Y +  ++G    P      L     +   
Sbjct: 299 NRRECNEVLVECGATLAGAFVREGLFDEILVYMAPTLLGSSARPLLGLPQLASMSEKVAL 358

Query: 339 MCVRRDYFGSDVCLEYIG 356
                   G D+ L  + 
Sbjct: 359 KWQDVRQVGDDLRLTLVS 376


>gi|24374975|ref|NP_719018.1| riboflavin biosynthesis protein RibD [Shewanella oneidensis MR-1]
 gi|24349701|gb|AAN56462.1|AE015783_5 riboflavin biosynthesis protein RibD [Shewanella oneidensis MR-1]
          Length = 381

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 126/374 (33%), Positives = 188/374 (50%), Gaps = 22/374 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S  D + MS A++ +R     T  NPSV C+IV D  ++G G     G PHAEV AL
Sbjct: 1   MNWSVLDNQMMSRAIQLARKGFYTTRPNPSVGCVIVNDNQIVGEGYHQKAGEPHAEVHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE ARGATAYVTLEPCSHYGR+PPCA  +I  G++RVVV V+DP+ +V GRG+Q L 
Sbjct: 61  RMAGELARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLR 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI +   +   E       ++ R       +T+K+A S D    ++   S  ITG  +
Sbjct: 121 DAGIQVDVGLHRDEAYALNLGFMKRMESGLPWVTVKLAASLDGKTALSNGVSKWITGPEA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFK 229
           +  V  LR +S A++ GI TVLADDP L  R + L          Q   P+R++LD   +
Sbjct: 181 RRDVQRLRLRSCALITGIETVLADDPSLNVRYSELGSLRAQLSESQVLQPLRVVLDSRAR 240

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGR 285
           + + + +   A+ +P+++V+        +     ++  +     +    L  LL+ L  +
Sbjct: 241 MPITAALF--AIESPILLVSTVSYSSDFMVQLPAHVTCLQLPAIEGRISLSALLSYLG-K 297

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCV 341
               +L+E GA +A +FI S L D ++LY++  ++G  G        Y           V
Sbjct: 298 SCNQVLIEAGATLAGAFIGSGLADELVLYQAMKILGGQGRNLLELPDYQMMADIPTLKLV 357

Query: 342 RRDYFGSDVCLEYI 355
                G+D      
Sbjct: 358 DERKVGADTRFTLR 371


>gi|269138330|ref|YP_003295030.1| riboflavin biosynthesis protein RibD [Edwardsiella tarda EIB202]
 gi|267983990|gb|ACY83819.1| riboflavin biosynthesis protein RibD [Edwardsiella tarda EIB202]
 gi|304558362|gb|ADM41026.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Edwardsiella tarda FL6-60]
          Length = 373

 Score =  356 bits (913), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 120/371 (32%), Positives = 180/371 (48%), Gaps = 18/371 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  +  D  +M+ A   +R     T+ NP+V C++V+D  ++G G     G PHAEV AL
Sbjct: 3   MSAAHSDEFYMARAFELARRGRFTTTPNPNVGCVLVRDDRIVGEGFHLRAGEPHAEVHAL 62

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L 
Sbjct: 63  RMAGELARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPHVAGRGLYRLQ 122

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           Q GI +   +M +E +     +L R      ++ LK+  S D    MA   S  IT   +
Sbjct: 123 QAGISVRHGVMLAEAEAINKGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSAAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228
           +  V   RAQS AIL    TVLADDP LT R   L E             P+R+I+D H 
Sbjct: 183 RADVQRYRAQSSAILSSSATVLADDPALTVRWASLDEATQRLYPQEHLRQPLRVIVDSHN 242

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           +++   ++I        ++   + D     +   +     + +  DL  L+  L    + 
Sbjct: 243 RVTPQHRLITQPGE--TLLARVDPDTQAWPSSVSQLAVPRHGEGLDLVLLMMQLGKMQLN 300

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344
           S+ VE G  +A + + + LVD +I+Y +  ++G+          L+              
Sbjct: 301 SVWVEAGPRLAGALLQAGLVDELIVYLAPTLLGDAARGLCHLPGLDRLGDAPALTFSDVT 360

Query: 345 YFGSDVCLEYI 355
             G+D+ L   
Sbjct: 361 RVGNDLRLTLR 371


>gi|157146970|ref|YP_001454289.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Citrobacter koseri ATCC BAA-895]
 gi|157084175|gb|ABV13853.1| hypothetical protein CKO_02747 [Citrobacter koseri ATCC BAA-895]
          Length = 367

 Score =  356 bits (913), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 126/367 (34%), Positives = 186/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AG+
Sbjct: 2   LDEFYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGD 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSETEQLNKGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R   L               P+RI+LD   +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWPELDASTQTLYPQENLRQPIRIVLDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++             DD  +     +      +    DL  L+ +L  + + S+ VE
Sbjct: 242 HRIVQQPGD--TWFARTQDDSRIWPETVRSLRVPEHNGHLDLVVLMMLLGKQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + +VD +I+Y +  ++G       +   LE+     +F      + G D
Sbjct: 300 AGPVLAGALLQAGVVDELIVYVAPKLLGSDARGLCVLPGLEKLSEAPHFKFNEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  I 
Sbjct: 360 VCLHLIP 366


>gi|117619328|ref|YP_857822.1| riboflavin biosynthesis protein RibD [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560735|gb|ABK37683.1| riboflavin biosynthesis protein RibD [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 369

 Score =  356 bits (913), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 121/366 (33%), Positives = 187/366 (51%), Gaps = 19/366 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D ++MS AL  +R     T+ NP V  ++VK G+V+G G     G PHAEV AL  
Sbjct: 2   FSQDDYQWMSRALELARRGRYTTAPNPCVGAVLVKAGVVVGEGWHQRAGEPHAEVYALHA 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ ARGATAYVTLEPCSH+GR+PPCA+ +I+ G+ RVV  + DP+ +V GRGL+ LS+ 
Sbjct: 62  AGDNARGATAYVTLEPCSHHGRTPPCAEALIKAGVTRVVAAMVDPNPQVGGRGLRMLSEA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  D  ++ SE +     +  R       +T+K+  S D    MA   S  IT   ++ 
Sbjct: 122 GIKTDFGLLASEAEALNPGFFKRMRTAFPQVTVKLGASLDGRTAMASGESQWITSPEARR 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V  LRA+ DA+L    TVLAD+  LT R + L               P+R+I+D   +L
Sbjct: 182 DVQRLRARHDAVLSSAETVLADNASLTVRWDELPASVKASYPKETLRQPLRVIVDSQNRL 241

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           + D  ++++    PV++             ++  + ++     DL  L  +L  + V S+
Sbjct: 242 TPDLPLLQSE--GPVLLARHKASGEWPAWVQQLEVPLLD-GKLDLVSLFMLLAKQNVNSV 298

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYF 346
           LVE G  +  + ++  LVD ++LY++  ++G+ G       G    +             
Sbjct: 299 LVEAGPRLCGALLDKGLVDDLVLYQAPKLMGDEGRGLFHLPGLTRLFQAPKLNIKDVRMV 358

Query: 347 GSDVCL 352
           G D+ +
Sbjct: 359 GPDIRI 364


>gi|319405760|emb|CBI79383.1| Riboflavin biosynthesis protein ribD [Bartonella sp. AR 15-3]
          Length = 374

 Score =  356 bits (913), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 154/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI----VIGRGVTAYGGCPHAE 56
           M   + D RFM+AA+R +  H+GLT  NPSV  LIV++      ++G GVTA  G PHAE
Sbjct: 1   MNKVAQDKRFMAAAIRLAERHIGLTGENPSVGALIVQNKETGSSIVGYGVTALRGRPHAE 60

Query: 57  VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           V+AL  AG  A GATAYVTLEPCSHYG++ PC   +I  GI RVV+ + DPD RV G G+
Sbjct: 61  VKALLMAGPLAYGATAYVTLEPCSHYGKTSPCVNALINAGITRVVIALSDPDQRVYGCGI 120

Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
             L   GI + + ++  E    L AYL  +  +R  +TLK+A+S DN IG  G  SV I+
Sbjct: 121 TLLRAAGIEVTEGVLAEEAFETLSAYLCVKKLQRCEVTLKMAISADNGIGKKGKSSVGIS 180

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
           G IS+ Q H+LRAQ++ I+VGIGT+LADDP+L CRL GL   SP+R+ILD   ++ LD+K
Sbjct: 181 GEISRAQTHILRAQNNVIMVGIGTILADDPQLDCRLPGLGMRSPIRVILDKDLRIPLDAK 240

Query: 236 IIKTALLAPVIIVTEN--DDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTS 289
           +++TA   P  ++           +A  +  ++I   D  +       +L +L  R + S
Sbjct: 241 VVQTAANIPTWVICGTVLSKKRKKIALEQYGVSICSVDTNNNVISPFTILQLLYQRKINS 300

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           +L+EGGA     F+++  VD +I + + I++G+  I +P  + YL + F  +     G+D
Sbjct: 301 VLLEGGAKTGEIFLDAGCVDCLICFYAPIILGKDRIKAPHFQSYLSE-FNEIEMRMLGND 359

Query: 350 VCLEYIGKNLCLQE 363
              ++  K LC +E
Sbjct: 360 RLCKWRRKILCSRE 373


>gi|229191491|ref|ZP_04318474.1| Riboflavin biosynthesis protein [Bacillus cereus ATCC 10876]
 gi|228591971|gb|EEK49807.1| Riboflavin biosynthesis protein [Bacillus cereus ATCC 10876]
          Length = 350

 Score =  356 bits (913), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 121/341 (35%), Positives = 184/341 (53%), Gaps = 10/341 (2%)

Query: 22  VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
            G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARG T YVTLEPCSH
Sbjct: 2   KGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGGTIYVTLEPCSH 61

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140
           +GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  + E E K     
Sbjct: 62  HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEV 121

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R ++ AILVG  TV
Sbjct: 122 FNKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTV 181

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
             D+P LT R+      +P+R+ILD   ++ +++ ++        I  T N       A 
Sbjct: 182 QKDNPSLTTRIP--NGRNPIRVILDSTLRIPMEANVVTDREAPTWIFTTSNHAEEKKKAL 239

Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
               + +         +L ++L +L  +GV+SLL+EGG  V  SFI ++L+D IILY + 
Sbjct: 240 ENAGVKVFVTSGEKHINLHEMLDVLGEKGVSSLLIEGGGEVNASFIENKLMDKIILYFAP 299

Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
            +IG    PS +E   + K    +       D+    IGK+
Sbjct: 300 KIIGGRLAPSFVEGNGITKMKDAIEFK----DISFTQIGKD 336


>gi|254975336|ref|ZP_05271808.1| riboflavin biosynthesis protein [Clostridium difficile QCD-66c26]
 gi|255092726|ref|ZP_05322204.1| riboflavin biosynthesis protein [Clostridium difficile CIP 107932]
 gi|255314465|ref|ZP_05356048.1| riboflavin biosynthesis protein [Clostridium difficile QCD-76w55]
 gi|255517142|ref|ZP_05384818.1| riboflavin biosynthesis protein [Clostridium difficile QCD-97b34]
 gi|255650247|ref|ZP_05397149.1| riboflavin biosynthesis protein [Clostridium difficile QCD-37x79]
 gi|260683365|ref|YP_003214650.1| riboflavin biosynthesis protein [Clostridium difficile CD196]
 gi|260686960|ref|YP_003218093.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Clostridium difficile R20291]
 gi|306520226|ref|ZP_07406573.1| riboflavin biosynthesis protein [Clostridium difficile QCD-32g58]
 gi|260209528|emb|CBA63111.1| riboflavin biosynthesis protein [Clostridium difficile CD196]
 gi|260212976|emb|CBE04276.1| riboflavin biosynthesis protein [Clostridium difficile R20291]
          Length = 367

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 116/363 (31%), Positives = 178/363 (49%), Gaps = 11/363 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M     D  +M  A+  ++   G  + NP V C+IVKD  +IG+G     G  HAEV A+
Sbjct: 1   MNQKEKDIYYMKKAIELAKNGEGFVNPNPLVGCVIVKDSNIIGKGYHEKFGSNHAEVNAI 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             A +  + +T YV LEPCSHYG++PPC   II+  I+RVV+   DP+  V G G++ L 
Sbjct: 61  NSAKQSLKDSTLYVNLEPCSHYGKTPPCVDKIIQNKIKRVVISTLDPNPLVCGNGVKKLK 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
              I +   ++E E +    A+      KR    +K AVS D  I      S  I+   S
Sbjct: 121 DNNIDVTVGILEDEARDLNEAFFYHIKNKRPLCIVKSAVSLDGKIATKSLESKWISNESS 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H  R +  +I+VGI TVL D+P LTCRLN  +   P RI++D H KL L+S ++K 
Sbjct: 181 RYLTHKYRNKYQSIMVGINTVLNDNPLLTCRLNQEKVSHPTRIVIDTHLKLPLNSNLVKD 240

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295
              +  I+ T   + +     ++ N+  I    +    DL+ ++  L    + S+LVEGG
Sbjct: 241 -KTSKTIVFTCCKESIKLSMLKENNVETIISPSKNNLVDLEFVMYKLGELNIDSVLVEGG 299

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDV 350
           A +  S   ++LVD + L+ S  +IG    P+ +    +                   D+
Sbjct: 300 ATLNDSLFRNKLVDKVKLFLSPKIIGGKDAPTFVSGEGINHLSDSTQLTINNVTLIDGDI 359

Query: 351 CLE 353
            +E
Sbjct: 360 LIE 362


>gi|309389474|gb|ADO77354.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Halanaerobium praevalens DSM 2228]
          Length = 379

 Score =  355 bits (912), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 133/376 (35%), Positives = 201/376 (53%), Gaps = 20/376 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D ++M  AL+ +   VG TS NP V  +IVK+G +IG G     G  HAEV AL +
Sbjct: 4   FSISDQKYMDRALKLAALAVGKTSPNPLVGAVIVKNGEIIGEGYHQKYGAQHAEVNALAK 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG +A GA  +V LEPCSH+G++PPC Q II  G++RVVV + DP+ +V+GRG++ L + 
Sbjct: 64  AGFKAEGAELFVNLEPCSHFGKTPPCTQAIIASGLKRVVVALVDPNPQVAGRGIKQLRKA 123

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++ ++ K     +L     +   + LK A + D  I  +   S  IT   ++ 
Sbjct: 124 GIKVEIGLLAAKAKKLNEIFLKYITSELPFVYLKKAQTLDGYIATSSSDSKWITNEQARK 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           + H LR + DAILVGIGT+LADDP LT RL   +   P+RIILDP  ++ +D++II+   
Sbjct: 184 EGHKLRQKVDAILVGIGTILADDPALTTRLEKTETKDPLRIILDPLLEIPIDAQIIEQKS 243

Query: 242 LAPVIIVTENDDPVLA---------LAFRKKNINIIYC-----DCRDLKKLLTILVGRGV 287
            A  +I+T  + P               +K  + II       +  DLKK+L  L  + +
Sbjct: 244 EAETLIITATEFPPAQAVAKFKKKEKILKKGGVQIISFAVDANNYFDLKKILKYLHQQKI 303

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE-GGIPSPLEEG----YLEKNFMCVR 342
            S+LVEGGA ++HSF+  +L+D    + +  + G   G  S    G        N   + 
Sbjct: 304 ASILVEGGAKLSHSFLAQKLIDKFYYFIAPKIYGGNDGCASFSGSGPKLMADTVNLEIIE 363

Query: 343 RDYFGSDVCLEYIGKN 358
           +     ++ L  + KN
Sbjct: 364 QRNLADNILLIAVSKN 379


>gi|113461193|ref|YP_719262.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Haemophilus somnus 129PT]
 gi|112823236|gb|ABI25325.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haemophilus
           somnus 129PT]
          Length = 376

 Score =  355 bits (912), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 128/371 (34%), Positives = 191/371 (51%), Gaps = 21/371 (5%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             S+ D  FM  AL  ++  +  T+ NP+V C++VK+G ++GRG     G PHAEV AL 
Sbjct: 4   TFSAQDEYFMQIALELAKKGIFTTTPNPAVGCVLVKNGEIVGRGFHFKAGQPHAEVMALR 63

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +AG+ A+GATAYVTLEPCSH+GR+PPCAQ +IE GIR V+V + DP+ +V+G+GL  L  
Sbjct: 64  DAGDRAKGATAYVTLEPCSHFGRTPPCAQGLIEAGIRNVIVAMKDPNPQVAGKGLAMLQA 123

Query: 122 KGIIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI     +  E        +LTR   ++  + LK+A+S D    MA   S  I+G  ++
Sbjct: 124 AGIESAVGLLQEKAELLNKGFLTRMRTQKPFVILKMAISLDGRTAMANGESKWISGEQAR 183

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFK 229
             V   RA+  AIL    TVLADDP L  R                   P+RIILD    
Sbjct: 184 QDVQQERAKVSAILSTAKTVLADDPLLNLRWEQFPSELQQNYKVEEVRQPVRIILDRLHL 243

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVT 288
           ++   K+ +    +PV +V + +  + A     + I +   +    L+ LL  L  R + 
Sbjct: 244 VTPRHKLFQ--CQSPVWLVGDKERDMSAFPDYCQYIKLFPSNEHSYLENLLIELAKRQIN 301

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRR 343
           SL +E G  +A +FI   LV+ +I+Y +  ++G        +P  L+       +  +  
Sbjct: 302 SLWLEAGETLAGAFIEENLVNELIIYMAPKLLGNEARGFCHLPH-LKRLADAPKWQLLSL 360

Query: 344 DYFGSDVCLEY 354
              G D+ L Y
Sbjct: 361 AQIGEDIKLNY 371


>gi|168181552|ref|ZP_02616216.1| riboflavin biosynthesis protein RibD [Clostridium botulinum Bf]
 gi|237796324|ref|YP_002863876.1| riboflavin biosynthesis protein RibD [Clostridium botulinum Ba4
           str. 657]
 gi|182674971|gb|EDT86932.1| riboflavin biosynthesis protein RibD [Clostridium botulinum Bf]
 gi|229264059|gb|ACQ55092.1| riboflavin biosynthesis protein RibD [Clostridium botulinum Ba4
           str. 657]
          Length = 365

 Score =  355 bits (912), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 121/358 (33%), Positives = 191/358 (53%), Gaps = 15/358 (4%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
            +M   L+ +    G  + NP V  ++VK+  +IG G   Y G PHAEV AL EAGE+A+
Sbjct: 6   FYMEKTLKLAERGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGPHAEVYALREAGEKAK 65

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GAT YVTLEPCSHYG++PPCA++I++ GI + ++ + DP+  V GRG+  L Q GI +V 
Sbjct: 66  GATIYVTLEPCSHYGKTPPCAEYIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVT 125

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            +ME E K     ++    +K+  + LK A + D  I      S  ITG  ++++V  +R
Sbjct: 126 EIMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATRTGESKWITGEEARHKVQQIR 185

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
                I+VGI TV+ DDP LT R+ G    SP  II+D + ++ L+SKI++T     + I
Sbjct: 186 NDLSGIMVGIDTVIKDDPLLTTRIEG--GRSPKAIIVDSNLRIPLESKILETLSKRAIYI 243

Query: 248 VTEN--DDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAAVAH 300
            T     +P    A       ++  +        L KL+  L   GV S+L+EGG+ +  
Sbjct: 244 ATTKKHKNPSKKNALENLGAKVLEFEENQEGKVPLNKLMEYLGTEGVDSILLEGGSTLNF 303

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
           S +   +VD I+ + +  ++G     + +    +E      N   ++ +  G D+ +E
Sbjct: 304 SALKEGIVDKIMCFIAPKIMGGQDSKTMIGGTGIESLKDIFNLQNLKFEKIGQDILIE 361


>gi|71906245|ref|YP_283832.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Dechloromonas aromatica RCB]
 gi|71845866|gb|AAZ45362.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Dechloromonas aromatica RCB]
          Length = 367

 Score =  355 bits (912), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 119/361 (32%), Positives = 186/361 (51%), Gaps = 13/361 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S+ D   M+ AL+ +   +  TS NP V C++V+DG ++G G     G PHAEV AL
Sbjct: 1   MSFSAVDHGMMARALQLAERGLWTTSPNPRVGCVLVRDGEIVGEGWHEKAGEPHAEVHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE A+G TAYVTLEPCSH+GR+PPCA+ +I  G+ RVV  + DP+  VSG+GL  L 
Sbjct: 61  RSAGERAKGTTAYVTLEPCSHHGRTPPCAEALIAAGVSRVVAAMTDPNPLVSGKGLALLR 120

Query: 121 QKGIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI     ++E+E +     +++R    R  + LK+A S D    +    S  ITG  +
Sbjct: 121 AAGIETASGLLENEARELNIGFVSRMTRGRPWLRLKVAASLDGKTALNNGVSQWITGPDA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H  RA++ AIL GIGTV  DDP+L+ R +      P+R+++D   +  ++++I++ 
Sbjct: 181 RRDGHAWRARACAILTGIGTVRDDDPQLSVR-DVATTRQPLRVVVDSKLETPVNARILQG 239

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGG 295
               PV+I    ++     + R    +++         DL  LL  L  RG+  +  E G
Sbjct: 240 G---PVLIAGAVENNARIESLRSLGADVLILPNPSGKVDLIALLVALGQRGINEVHAEAG 296

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVC 351
             +  S +   LVD ++LY +  +IG           L     ++          G+D+ 
Sbjct: 297 FKLNGSLLREGLVDELLLYLAPCLIGHQASGLFNLPELTTLDGKQRLQIRDLRQVGADIR 356

Query: 352 L 352
           +
Sbjct: 357 V 357


>gi|221632527|ref|YP_002521748.1| riboflavin biosynthesis protein RibD [Thermomicrobium roseum DSM
           5159]
 gi|221155601|gb|ACM04728.1| riboflavin biosynthesis protein RibD [Thermomicrobium roseum DSM
           5159]
          Length = 382

 Score =  355 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 134/369 (36%), Positives = 189/369 (51%), Gaps = 16/369 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M     D  +M  A+  +R   G  + NP+V  +IV++G V+G G T   G PHAE+ AL
Sbjct: 2   MQELDTDRYWMQRAIALARRAQGRVAPNPAVGAVIVREGEVVGEGCTQPPGGPHAEIVAL 61

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           + AGE ARGAT YVTLEPC+HYGR+PPC + I++ GIRRVV  + DP   V+GRG   L 
Sbjct: 62  QRAGERARGATLYVTLEPCAHYGRTPPCVEAIVQAGIRRVVAAILDPFPAVAGRGFTLLR 121

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           Q G+ +   +           YL R  E    +TLK A++ D  I      S  ITG  +
Sbjct: 122 QAGVDVTVGIEAEAAAEVNAGYLKRLRESLPEVTLKYAMTLDGHIATRTGHSKWITGQEA 181

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL-----NGLQEHSPMRIILDPHFKLSLDS 234
           +   H LR Q DAILVG+ TVL DDPELT RL          HSP+R+++D   +    +
Sbjct: 182 RRYAHQLRDQHDAILVGVETVLTDDPELTTRLDPRDAGDGGPHSPLRVVIDTRARTPPSA 241

Query: 235 KIIKTALLAPV-IIVTENDDPVLALAFRKKNINI----IYCDCRDLKKLLTILVGRGVTS 289
           +++ + L A   +I TE   P    A  K    +    + C   DL   L +L  RG+  
Sbjct: 242 RLLDSRLPARTLVITTEAAPPERVAALWKAGAELAFVPLRCGHVDLAAALRVLAERGINR 301

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRD 344
           +LVEGG  V  S     L D+++ + + +++G    P PL    + +         VR  
Sbjct: 302 VLVEGGGRVLGSLFEQGLADAVVAFIAPVLVGGTAAPVPLAGEGVARMEDAPRLTGVRVR 361

Query: 345 YFGSDVCLE 353
             G D+ +E
Sbjct: 362 QVGDDLVIE 370


>gi|197283994|ref|YP_002149866.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Proteus mirabilis HI4320]
 gi|194681481|emb|CAR40325.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Proteus mirabilis HI4320]
          Length = 385

 Score =  355 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 121/364 (33%), Positives = 172/364 (47%), Gaps = 16/364 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D  +M  A+  +      TS NP+V C+IVK+G +IG G   + G PHAEV AL  AG
Sbjct: 16  ANDETYMRRAIELAALGRFTTSPNPNVGCVIVKEGKIIGEGYHHHAGGPHAEVNALNMAG 75

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E A+GAT YVTLEPCSH+G++PPCA  +I  G++RVV  + DP+ +V+GRGL  L   GI
Sbjct: 76  ENAKGATVYVTLEPCSHFGKTPPCADALINAGVKRVVAAMQDPNPQVAGRGLHKLVAAGI 135

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++  E +     +  R      +I LK+A S D    +A   S  IT   S+  V
Sbjct: 136 DVSHGVLMQEAEKLNIGFFKRMRTGFPYIQLKLAASLDGKTALASGESQWITSNASRQDV 195

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSL 232
              RAQ+ AIL    TVLADDP +  R   L +             P+RII D   +++ 
Sbjct: 196 QNFRAQASAILTTSATVLADDPAMNVRWEALSDEIKAIYPLESLRQPIRIITDSQNRVTP 255

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
           D KI + A    +       +                    DL  L+  L  R + S+ V
Sbjct: 256 DYKITQLAGECLLARTHSQQEAWQGDVSEILLPTNGKNSSVDLVLLMMQLGKRNINSVWV 315

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGS 348
           E GA  A + +   LVD +I+Y +  ++G         SPL        F        G 
Sbjct: 316 ESGAHFAGALLELGLVDELIIYIAPKILGNDARGLLSISPLSSLSEAPEFTIDSLQQIGP 375

Query: 349 DVCL 352
           D+ +
Sbjct: 376 DIRV 379


>gi|28210395|ref|NP_781339.1| riboflavin biosynthesis protein [Clostridium tetani E88]
 gi|28202832|gb|AAO35276.1| riboflavin biosynthesis protein [Clostridium tetani E88]
          Length = 380

 Score =  355 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 111/361 (30%), Positives = 183/361 (50%), Gaps = 11/361 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + D  +M  A+  +    G  + NP V  +IVKDG +IG G     G  HAE++A + 
Sbjct: 18  MMNLDEIYMKRAIELAHLGEGYVNPNPLVGAVIVKDGRIIGEGYHKKFGEAHAEIEAFKS 77

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
             E+ +G T YV LEPCSHYG++PPC   II+ GI++V++ + DP+  V+GRGL+ L + 
Sbjct: 78  CKEDPKGGTLYVNLEPCSHYGKTPPCVDVIIKKGIKKVIIGMKDPNPLVAGRGLEILKKA 137

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
            I +    +E E +     ++     K+    LK A + D  I  +   S  ITG  S+ 
Sbjct: 138 NIEVRVGTLEDECRNLNEIFIKYITYKKPFCILKWASTLDGKICSSIGDSRWITGEDSRE 197

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VHL+R +  +I+VG+ T+L D+P LT RL   +  +P RII+D   +  LD++I K   
Sbjct: 198 YVHLIRNKVSSIMVGVNTILRDNPSLTTRLKDRKGVNPTRIIVDSKGRTPLDARIFKEEG 257

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
               I  T   +      F K    II    +    DL+ L+  L    + S+L+EGG  
Sbjct: 258 D-TFIATTSQIEDKKIKEFEKVGAKIIIIPEKGRKVDLQYLVNYLTKLNIDSILLEGGGT 316

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
           + +S +   +VD ++++ +  ++G     +P+E   ++          +    F  D+ +
Sbjct: 317 LNYSALKEGIVDKVLMFLAPKILGGENSKTPIEGEGIKYIKDCIELKDLSIKNFKEDILI 376

Query: 353 E 353
           E
Sbjct: 377 E 377


>gi|238752768|ref|ZP_04614237.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia rohdei
           ATCC 43380]
 gi|238709026|gb|EEQ01275.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia rohdei
           ATCC 43380]
          Length = 369

 Score =  355 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     TS NP+V C++V+DG ++G G     G PHAEV AL  AGE+
Sbjct: 4   DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHQRAGEPHAEVHALRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GATA+VTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q GI +
Sbjct: 64  AQGATAFVTLEPCSHHGRTPPCADALVAAGVVRVVAAMQDPNPEVAGRGLYKLKQAGIDV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 124 NHGLMLAEAEAANLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
            RA+S AIL    TVLADDP LT R   L               P+RIILD H +++ + 
Sbjct: 184 FRAESSAILSTSATVLADDPALTVRWQALDAETQALYPEDKLRQPIRIILDSHNRVTPEH 243

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           K+  T    P  +     D     A  ++ +   + +  DL  L+  L  R + S+ VE 
Sbjct: 244 KV--TQQDGPCWLARVEADTQPWPANVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           G  +A + + + +VD +ILY +  ++G         + L        F+       G D+
Sbjct: 302 GPQLAGALLQAGVVDELILYIAPKLLGTDARGLCQLAGLTHLLQAPEFVFSEVRQVGPDL 361

Query: 351 CLEYIGK 357
            L    K
Sbjct: 362 RLRLKPK 368


>gi|291533443|emb|CBL06556.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Megamonas hypermegale ART12/1]
          Length = 360

 Score =  355 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 109/353 (30%), Positives = 187/353 (52%), Gaps = 13/353 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A++ +   +G TS NP V  +IVKD  V+G G     G PHAEV AL +AGE A+GA
Sbjct: 1   MRLAMQLAGNAIGRTSPNPLVGAVIVKDNRVVGCGWHREAGTPHAEVHALNQAGELAQGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
             YVTLEPC+HYG++PPC++ ++E  ++ V   + D + +V+G+G + L   GI +    
Sbjct: 61  DVYVTLEPCAHYGKTPPCSKALVEAKVKNVYGGLLDVNPKVAGKGFKILEDAGIHVEYGF 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           ++ E +     +      K+  I LK A++ D  I  A   S  IT   S+   + LR  
Sbjct: 121 LQDELRKQNEVFFKWIEHKKPFIVLKAAMTLDGKIATATGQSKWITNETSRAYGYKLRDI 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            D I+VGI TV+ D+P LT R++G    +P+RI++D   K+ +++ + +      ++  T
Sbjct: 181 YDGIMVGINTVIEDNPMLTARVDG--GKNPIRIVVDSSLKIDINANVAQDKSAKTIVATT 238

Query: 250 ENDDPVLALAFRKK-----NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           +  D    L  + +      ++    D  D++KLL IL  + + S+LVEGGA ++ SF+ 
Sbjct: 239 DKADKDKILKLQAQDVDVIVVDKDENDKVDIEKLLDILGQQNICSILVEGGATLSGSFVA 298

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352
            +LVD +  + +  ++G     +P+    +       +   ++ +    D+ +
Sbjct: 299 KKLVDKVYFFIAPKIVGGKEAKTPVAGTGILNLQEALSLKDIQIEKLEEDILI 351


>gi|163783070|ref|ZP_02178065.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881750|gb|EDP75259.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 362

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 122/353 (34%), Positives = 197/353 (55%), Gaps = 5/353 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +MS AL  ++   GLT  NP+V C++V +G ++G G     G PHAEV ALE+AGE+
Sbjct: 3   DVGYMSLALSLAKRRKGLTHPNPTVGCVVVNEGEIVGLGYHEGAGHPHAEVVALEQAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+G+T YVTLEPC+H+GR+PPC   +I  GIR+ VV V DP+  V G+G++ L + G+ +
Sbjct: 63  AKGSTLYVTLEPCTHFGRTPPCTDALIRAGIRKAVVAVKDPNPVVGGKGIERLREAGLDV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E +     + T    KR ++TLK+A + D  +      S  I+   S+   H 
Sbjct: 123 EVGVLEEEARELNEDFFTFITMKRPYVTLKLAQTLDGKVATPSGDSKWISSPESRRFAHR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR+++ A+LVG+ T L D+P LT R        P+RI++DP  ++ +DS ++   +   +
Sbjct: 183 LRSEATAVLVGLNTFLRDNPSLTIRHIPF-GRQPLRIVIDPELEIPMDSNLVSDGMAQTL 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           ++ +  D P          + ++Y +  +L +LL  L  R V  LLVEGGA     F+  
Sbjct: 242 VVFSRRD-PAKESELLGAGVQLLYMEKIELGELLKELASRDVLHLLVEGGAYTVSQFLKE 300

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC-VRRDY-FGSDVCLEYIG 356
            L D ++++++  V+G+G   S L    +       +RR++  G D   EY+ 
Sbjct: 301 GLWDRLVVFQAPRVMGDGISLSGLGVDRVNDCLKLKIRREHALGEDRVFEYVP 353


>gi|114331089|ref|YP_747311.1| riboflavin biosynthesis protein RibD [Nitrosomonas eutropha C91]
 gi|114308103|gb|ABI59346.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Nitrosomonas eutropha C91]
          Length = 367

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 120/359 (33%), Positives = 182/359 (50%), Gaps = 12/359 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            ++ D   MS AL+ +   +  TS NP V C+IV DG V+G G     G  HAE+ AL E
Sbjct: 6   FTASDYMHMSHALQLAERGLFTTSPNPRVGCVIVNDGKVVGTGWHERVGESHAEINALRE 65

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ ARGAT YVTLEPCSH+GR+PPC + +I   + RV++ +DDP+  V+G+G + L + 
Sbjct: 66  AGDLARGATVYVTLEPCSHHGRTPPCVEALICAEVCRVIMAMDDPNPHVNGQGKEKLQKA 125

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +   ++E E +     ++TR    R  I  KIA S D  I +    S  ITG  ++ 
Sbjct: 126 GVEVQTGLLEDEAQQLNIGFITRMHHSRPWIRTKIAASLDGRIALKNGKSQWITGEPARQ 185

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
             H  RA+S AIL G+ +V  DDP LT R        P+RI+LD + ++ L +K+++ A 
Sbjct: 186 DGHRWRARSCAILTGVNSVKVDDPLLTVRYIE-TSRQPIRIVLDSNLEIPLQAKLLENAD 244

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAA 297
                I T   D            +++         DLK ++T L   G+  LLVE G  
Sbjct: 245 --TTWIFTVQADRGKIHLLEDAGAHVVVLPDLAGKVDLKAMITKLAELGINELLVEAGPV 302

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDVCL 352
           +  + + + L+D II Y +  ++G       +     +   + N         G D+ L
Sbjct: 303 LNGALVAAELIDEIIFYFAPNLLGNSAQAMLVLPEITDLSEKYNLQITDIRKIGIDIRL 361


>gi|261867792|ref|YP_003255714.1| riboflavin biosynthesis protein RibD [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413124|gb|ACX82495.1| riboflavin biosynthesis protein RibD [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 374

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 132/373 (35%), Positives = 192/373 (51%), Gaps = 21/373 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D  FM  AL  ++     T+ NPSV C++VK+G ++G+G     G PHAEV AL E
Sbjct: 5   FSPQDVAFMQLALDLAKQGEFTTTPNPSVGCVLVKNGKIVGKGFHFKAGEPHAEVMALRE 64

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH+GR+PPCA+ ++E G+ +V+  + DP+ +V+G+GLQ L+  
Sbjct: 65  AGENARGATAYVTLEPCSHFGRTPPCAKGLVEAGVSKVIAAMCDPNPQVAGKGLQILADA 124

Query: 123 GIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI     +  E        +L R    +  + LK+A+S D    MA   S  ITG  ++ 
Sbjct: 125 GIQSAVGLLEEKAEQLNKGFLKRMRTGKPFVQLKLAMSIDGKTAMASGESKWITGAQARM 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V   RA++ A+L    TVLADDP L  R   L               P+R+ILD   K+
Sbjct: 185 DVQQYRAKASAMLSTSQTVLADDPSLNVRWAELPNETQARYVQENLRQPVRVILDSTHKV 244

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTS 289
             D K+  T   APV +  E+D  +       + + +        L+ L+T L  R + +
Sbjct: 245 RSDFKVFLTD--APVWLAGEDDFQLTGFPTSTEYLKLDRSHGESRLQALMTELGKRQINT 302

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRD 344
           L VE GA +A + I   LVD +I+Y +  ++G+       +P  L        +     +
Sbjct: 303 LWVEAGATLAGALIAENLVDELIIYMAPKLLGDHAKDLCHLPH-LTRLADAPLWQLQSCE 361

Query: 345 YFGSDVCLEYIGK 357
             G D+ L YI K
Sbjct: 362 PTGDDLKLIYIRK 374


>gi|261365730|ref|ZP_05978613.1| riboflavin biosynthesis protein RibD [Neisseria mucosa ATCC 25996]
 gi|288565756|gb|EFC87316.1| riboflavin biosynthesis protein RibD [Neisseria mucosa ATCC 25996]
          Length = 365

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 137/363 (37%), Positives = 190/363 (52%), Gaps = 13/363 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D + M  AL  +R     TS NP V C+I   G ++G+G     G PHAEV AL +AGE
Sbjct: 5   IDTQMMQNALALARLGRFSTSPNPRVGCVIAHGGQIVGQGFHVKAGEPHAEVHALRQAGE 64

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            ARGATAYVTLEPCSHYGR+PPCA+ +I  G+ RVV  + DP+  V+G+GL  L   GI 
Sbjct: 65  MARGATAYVTLEPCSHYGRTPPCAEALISSGVSRVVAAMTDPNPLVAGKGLAMLEAAGIR 124

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
            +  ++E+E +     +L+R    R  + +K A S D    +A   S  ITG  ++  V 
Sbjct: 125 TESGLLEAEARELNRGFLSRIERGRPFVRIKCAASLDGKTALADGRSYWITGEAARADVQ 184

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LRA+S A+L GIGTVLAD+P L  R        P RI+LD   +  L S ++    L+P
Sbjct: 185 TLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSKLQTPLGSHMVSDD-LSP 242

Query: 245 VIIVTENDDPVLALAFRK-KNINIIY-----CDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
            +IVT  DD      +R   +I I+          DL  LL  L   G   ++VE GA +
Sbjct: 243 TVIVTAVDDEERLKPYRAFHHIRILRSSENAAGRIDLAALLPQLAELGYGEIMVEAGATL 302

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
             +FI + L D I+LY++  ++GEG     +P+       E  +     +  G DV    
Sbjct: 303 TSAFIEAGLADEIVLYQAPKILGEGRSLLTLPANPAVLTSEGEWESRSVELIGQDVKWVL 362

Query: 355 IGK 357
             K
Sbjct: 363 RKK 365


>gi|307825581|ref|ZP_07655799.1| riboflavin biosynthesis protein RibD [Methylobacter tundripaludum
           SV96]
 gi|307733467|gb|EFO04326.1| riboflavin biosynthesis protein RibD [Methylobacter tundripaludum
           SV96]
          Length = 361

 Score =  355 bits (911), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 120/362 (33%), Positives = 193/362 (53%), Gaps = 13/362 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  DA +M+ A+  ++     T  NP V C++V+DG VIG+G     G  HAEV+AL+  
Sbjct: 3   SVRDAFYMAQAISLAKKGRYTTDPNPRVGCVLVRDGEVIGQGWHVKAGQGHAEVEALKNV 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
             +A+GATAYVTLEPCSH GR+PPC   +I+ G+ RVV  + DP+ +VSG GL+ L   G
Sbjct: 63  -PDAKGATAYVTLEPCSHQGRTPPCCDALIKAGVSRVVAAMQDPNPQVSGSGLKKLKVAG 121

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I ++  +++ +       ++ R  + R  +  K+A+S D    MA   S  IT   ++  
Sbjct: 122 IEVICGVLQEDALALNRGFIKRMTDSRPFVRSKLAMSLDGRTAMASGESKWITSNEARAD 181

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LRA+S AIL GI TVLADDP L  R++G     P+R++LD H  + + +++ K    
Sbjct: 182 VHRLRAESSAILTGINTVLADDPALNARVDG-DVLQPVRVVLDTHLNMPVTAQMAKLPGR 240

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298
           +  +I+T   D     A ++    +    C+    DL+ ++  L  + +  LLVE G+ +
Sbjct: 241 S--LILTCAQDEQKQGALQQVGFEVYQLPCKNGRLDLQAVMDFLGQQQINELLVEAGSVL 298

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEY 354
             + ++   VD  ++Y +  ++G+ G        L++   +K          G D+ L Y
Sbjct: 299 NGALLDEDWVDEYVIYMAPCILGDQGRGLFNLPGLQQMADKKQLKLRDVRQVGQDLKLTY 358

Query: 355 IG 356
             
Sbjct: 359 TP 360


>gi|228953669|ref|ZP_04115709.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229070840|ref|ZP_04204068.1| Riboflavin biosynthesis protein [Bacillus cereus F65185]
 gi|229179672|ref|ZP_04307022.1| Riboflavin biosynthesis protein [Bacillus cereus 172560W]
 gi|228603778|gb|EEK61249.1| Riboflavin biosynthesis protein [Bacillus cereus 172560W]
 gi|228712230|gb|EEL64177.1| Riboflavin biosynthesis protein [Bacillus cereus F65185]
 gi|228805903|gb|EEM52482.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 350

 Score =  355 bits (911), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 121/341 (35%), Positives = 184/341 (53%), Gaps = 10/341 (2%)

Query: 22  VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
            G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARG T YVTLEPCSH
Sbjct: 2   KGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGGTIYVTLEPCSH 61

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140
           +GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  + E E K     
Sbjct: 62  HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEV 121

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R ++ AILVG  TV
Sbjct: 122 FNKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTV 181

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
             D+P LT R+      +P+R+ILD   ++ +++ ++        I  T N       A 
Sbjct: 182 QKDNPSLTTRIP--NGRNPIRVILDSTLRIPMEANVVTDREAPTWIFTTSNHAEEKKKAL 239

Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
               + +         +L ++L +L  +GV+SLL+EGG  V  SFI ++L+D IILY + 
Sbjct: 240 ENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIENKLMDKIILYFAP 299

Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
            +IG    PS +E   + K    +       D+    IGK+
Sbjct: 300 KIIGGRLAPSFVEGTGITKMKDAIEFK----DISFTQIGKD 336


>gi|239627638|ref|ZP_04670669.1| riboflavin synthase subunit alpha [Clostridiales bacterium
           1_7_47_FAA]
 gi|239517784|gb|EEQ57650.1| riboflavin synthase subunit alpha [Clostridiales bacterium
           1_7_47FAA]
          Length = 370

 Score =  355 bits (911), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 190/373 (50%), Gaps = 14/373 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  +S D  +M  AL  +    G  + NP V  +IV+DG VIG+G   + G PHAE  AL
Sbjct: 1   MSETS-DNIYMGRALALAAKGEGRVNPNPLVGAVIVRDGAVIGQGYHGFYGGPHAERAAL 59

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           +     A+GA  YVTLEPC HYG++PPC   II+ GIRRVV+   DP+  V+G+G+  L 
Sbjct: 60  DSLTAPAKGAVLYVTLEPCCHYGKTPPCTDAIIKSGIRRVVIGAMDPNPLVAGKGIAALK 119

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI ++  ++E E       +      ++ ++ +K A++ D     +G  S  ITG  +
Sbjct: 120 SHGIEVIQGVLEEECIRQNEVFFHFIRTRQPYVVMKYAMTMDGRTATSGRLSRWITGEQA 179

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  VH  R +  A++ G+GT+LADDP+LTCR+ G    +P+RII D      L S +++T
Sbjct: 180 REHVHKTRNRLSAVMTGLGTILADDPQLTCRIPG--GRNPVRIICDTRLMTPLTSNVVRT 237

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295
           A     I+ T   DP     F+     I+    R    DL+ L+  L G  + S+L+EGG
Sbjct: 238 APHVRTILATCCQDPAAMAPFKDAGCEILILPERDGHTDLRFLMERLGGMDIDSVLLEGG 297

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDV 350
           +A+  S ++  +V  +  Y +  + G      P+    +E      +    +    G D+
Sbjct: 298 SALNWSALDQGIVHKLQAYIAPKIFGGEKGLCPVGGKGVELPGMAFSLEPPKITVLGRDI 357

Query: 351 CLEYIGKNLCLQE 363
            LE  G   C Q 
Sbjct: 358 LLES-GVVPCSQA 369


>gi|227358137|ref|ZP_03842478.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Proteus mirabilis ATCC 29906]
 gi|227161473|gb|EEI46510.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Proteus mirabilis ATCC 29906]
          Length = 385

 Score =  355 bits (911), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 121/364 (33%), Positives = 173/364 (47%), Gaps = 16/364 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D  +M  A+  +      TS NP+V C+IVK+G +IG G   + G PHAEV AL  AG
Sbjct: 16  ANDETYMRRAIELAALGRFTTSPNPNVGCVIVKEGKIIGEGYHHHAGGPHAEVNALNMAG 75

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E A+GAT YVTLEPCSH+G++PPCA  +I  G++RVV  + DP+ +V+GRGL  L   GI
Sbjct: 76  ENAKGATVYVTLEPCSHFGKTPPCADALINAGVKRVVAAMQDPNPQVAGRGLHKLVAAGI 135

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++  E +     +  R      +I LK+A S D    +A   S  IT   S+  V
Sbjct: 136 DVSHGVLMQEAEKLNIGFFKRMRTGFPYIQLKLAASLDGKTALASGESQWITSNASRQDV 195

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSL 232
              RAQ+ AIL    TVLADDP +  R   L +             P+RII D   +++ 
Sbjct: 196 QNFRAQASAILTTSATVLADDPAMNVRWEVLSDEIKAIYPLESLRQPIRIITDSQNRVTP 255

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
           D KI + A    +       +                    DL  L+  L  R + S+ V
Sbjct: 256 DYKITQLAGECLLARTHSQQEDWQGDVSEILLPTNGKNSSVDLVLLMMQLGKRNINSIWV 315

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGS 348
           E GA  A + +   LVD +I+Y +  ++G+        SPL        F        G 
Sbjct: 316 ESGAHFAGALLELGLVDELIIYIAPKILGDDARGLLSISPLSSLSESPEFTIDSLQQIGP 375

Query: 349 DVCL 352
           D+ +
Sbjct: 376 DIRV 379


>gi|163868466|ref|YP_001609675.1| riboflavin biosynthesis protein ribD [Bartonella tribocorum CIP
           105476]
 gi|161018122|emb|CAK01680.1| Riboflavin biosynthesis protein ribD [Bartonella tribocorum CIP
           105476]
          Length = 375

 Score =  355 bits (911), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 155/376 (41%), Positives = 224/376 (59%), Gaps = 13/376 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-----VIGRGVTAYGGCPHA 55
           M     D RFM+AA+R +  HVGLT  NPSV  LIV++       ++G GVTA+ G PHA
Sbjct: 1   MNKKVQDERFMAAAIRLAERHVGLTGENPSVGALIVQNDDCAGPFIVGYGVTAFHGRPHA 60

Query: 56  EVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           EVQAL  AG  A+GATAYVTLEPC+HYG++ PC   +I+ GI R+VV + D D RV GRG
Sbjct: 61  EVQALRMAGPLAQGATAYVTLEPCAHYGKTSPCVNALIDSGISRIVVALTDCDKRVDGRG 120

Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           L  L + GI +V+ ++  E    L  +   +  +R  +T K+AVS DN +G    G + I
Sbjct: 121 LALLREAGIKVVEGILAEEAFESLWTHWCIKKMQRCAVTFKMAVSADNSVGKRDEGEIRI 180

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           +G +S    H+LRAQ++AILVGIGT+LADDP+L CRL G++  SP+RIILD    + L++
Sbjct: 181 SGALSHTHTHILRAQNNAILVGIGTILADDPQLNCRLPGMEMRSPIRIILDADLSIPLEA 240

Query: 235 KIIKTALLAPVIIVTEND--DPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVT 288
           K+++TA+  P  ++ + D           +  +++   +  +       LL IL   G+ 
Sbjct: 241 KVVQTAIKIPTWVICDVDLSKKSKKNTLEQYGVSVYSVEMNNGYVEPFALLQILYKHGIN 300

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
           S+L+EGG      F+N+  VD +I + S +V+G+  I +P    YL + F  V    FG+
Sbjct: 301 SVLLEGGVKTGEKFLNAGCVDHLICFYSPVVLGKKRIEAPHFGNYLSQ-FHEVETKMFGN 359

Query: 349 DVCLEYIGKNLCLQEL 364
           D   ++  K LC QEL
Sbjct: 360 DRFYKWRRKTLCSQEL 375


>gi|83754218|pdb|2B3Z|A Chain A, Crystal Structure Of A Bifunctional Deaminase And
           Reductase Involved In Riboflavin Biosynthesis
 gi|83754219|pdb|2B3Z|B Chain B, Crystal Structure Of A Bifunctional Deaminase And
           Reductase Involved In Riboflavin Biosynthesis
 gi|83754220|pdb|2B3Z|C Chain C, Crystal Structure Of A Bifunctional Deaminase And
           Reductase Involved In Riboflavin Biosynthesis
 gi|83754221|pdb|2B3Z|D Chain D, Crystal Structure Of A Bifunctional Deaminase And
           Reductase Involved In Riboflavin Biosynthesis
 gi|83754933|pdb|2D5N|A Chain A, Crystal Structure Of A Bifunctional Deaminase And
           Reductase Involved In Riboflavin Biosynthesis
 gi|83754934|pdb|2D5N|B Chain B, Crystal Structure Of A Bifunctional Deaminase And
           Reductase Involved In Riboflavin Biosynthesis
 gi|83754935|pdb|2D5N|C Chain C, Crystal Structure Of A Bifunctional Deaminase And
           Reductase Involved In Riboflavin Biosynthesis
 gi|83754936|pdb|2D5N|D Chain D, Crystal Structure Of A Bifunctional Deaminase And
           Reductase Involved In Riboflavin Biosynthesis
 gi|211939446|pdb|3EX8|A Chain A, Complex Structure Of Bacillus Subtilis Ribg Reduction
           Mechanism In Riboflavin Biosynthesis
 gi|211939447|pdb|3EX8|B Chain B, Complex Structure Of Bacillus Subtilis Ribg Reduction
           Mechanism In Riboflavin Biosynthesis
 gi|211939448|pdb|3EX8|C Chain C, Complex Structure Of Bacillus Subtilis Ribg Reduction
           Mechanism In Riboflavin Biosynthesis
 gi|211939449|pdb|3EX8|D Chain D, Complex Structure Of Bacillus Subtilis Ribg Reduction
           Mechanism In Riboflavin Biosynthesis
          Length = 373

 Score =  354 bits (910), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 119/356 (33%), Positives = 175/356 (49%), Gaps = 9/356 (2%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           S +  +M  AL  ++   G T +NP V  ++VKDG ++G G     G  HAEV A+  AG
Sbjct: 12  SMEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAG 71

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
             A GA  YVTLEPCSHYG++PPCA+ II  GI+RV V + DP+  V+GRG+  + + GI
Sbjct: 72  AHAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGI 131

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            + + ++  + +     +L        ++TLK A S D  I  +   S  IT   ++   
Sbjct: 132 EVREGILADQAERLNEKFLHFMRTGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDA 191

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
              R    +ILVG+GTV AD+P LTCRL  +    P+R+ILD    +  D+K+I   +  
Sbjct: 192 QQYRKTHQSILVGVGTVKADNPSLTCRLPNVT-KQPVRVILDTVLSIPEDAKVICDQIAP 250

Query: 244 PVIIVTENDDPVLALAFRKKNINI--IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
             I  T   D           +NI  +  +   +  +L IL   G+ S+ VEGG+AV  S
Sbjct: 251 TWIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVHGS 310

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCL 352
           F+       II Y +  +IG    PS +     +                G D+ L
Sbjct: 311 FVKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKL 366


>gi|311693383|gb|ADP96256.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [marine bacterium HP15]
          Length = 371

 Score =  354 bits (910), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 130/371 (35%), Positives = 188/371 (50%), Gaps = 17/371 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + D   M+ A++ +      T  NP V C+I +  +V+G G     G  HAE +AL +
Sbjct: 2   IENRDRAMMARAVQLAWRGRYSTHPNPRVGCVIARGDLVLGEGWHERAGEAHAETRALSQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG +ARGATAYVTLEPCSH+GR+PPCA+ +I+ G+  V     DP+  VSGRGL  L + 
Sbjct: 62  AGPDARGATAYVTLEPCSHFGRTPPCARALIDAGVAHVYAATKDPNPSVSGRGLDMLREA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI + + ++  E       ++ R    R  + LK+A S D    MA   S  ITG  ++ 
Sbjct: 122 GIRVTEGLLAEEAARLNPGFMKRMNTGRPWVRLKMAASLDGRTAMASGESQWITGPEARR 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--------HSPMRIILDPHFKLSLD 233
            V  LRA SDAIL G+GTVLADDP LT R   L +          P+R+I D   +    
Sbjct: 182 DVQRLRAISDAILTGVGTVLADDPSLTVRREELGDIGDATEPSRQPLRVIADRDARTPSS 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTS 289
           +KI++   +  V   +       A       I++       +  DL +LL  L   G+  
Sbjct: 242 AKILQGGNVQ-VFCASSTLATAPAQDLAALGISLTGVAWKDNGIDLAELLDSLGELGINE 300

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYF 346
           LLVE G  +A +FIN  LVD + LY++ + +G  G P+   PLE    +  +  + R   
Sbjct: 301 LLVEAGPTLAGTFINENLVDELWLYQAPVFLGSTGRPTAHLPLETMADKVQWKVLDRRQV 360

Query: 347 GSDVCLEYIGK 357
           G D  L    +
Sbjct: 361 GEDQRLILTRR 371


>gi|309378405|emb|CBX22958.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 369

 Score =  354 bits (910), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 134/366 (36%), Positives = 191/366 (52%), Gaps = 13/366 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL+ +      TS NP V C+I + G V+G+G     G PHAEV AL +
Sbjct: 2   FSETDISMMQNALKLAALGRFSTSPNPRVGCVIAQGGQVVGQGFHVKAGEPHAEVHALRQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   
Sbjct: 62  AGEMAKGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  +  ++ESE +     +L+R   +R  + LK AVS D    ++   S  ITG  ++ 
Sbjct: 122 GIKTECGLLESEARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V +LRA+S A+L GIGTVLAD+P L  R        P RI+LD   +L LDS ++ T  
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPLDSHLL-TDG 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGG 295
            +P  I T   +      +R+     I           DL +L+ +L G G   ++VE G
Sbjct: 240 QSPTYIATLERNEDRLHPYREHAHVRILMPSETADGKIDLHRLMRLLAGEGYGEVMVEAG 299

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           A +  +F+   L D I+LYRS  ++G G     +P           +  V  +  G DV 
Sbjct: 300 AKLTSAFLAEDLADEIVLYRSPKILGSGKDLFALPENRAALSAPPLWTPVSTEILGHDVK 359

Query: 352 LEYIGK 357
             +   
Sbjct: 360 TVFRKN 365


>gi|152998046|ref|YP_001342881.1| riboflavin biosynthesis protein RibD [Marinomonas sp. MWYL1]
 gi|150838970|gb|ABR72946.1| riboflavin biosynthesis protein RibD [Marinomonas sp. MWYL1]
          Length = 384

 Score =  354 bits (910), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 192/368 (52%), Gaps = 16/368 (4%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M+ A++ ++     T  NP V C++VKD  +IG+G     G  HAEV AL +A  +A
Sbjct: 7   EYWMAKAIQLAKKGRYTTHPNPRVGCVLVKDQQIIGQGFHVKAGEGHAEVNALADAKHDA 66

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            GATAYVTLEPCSH G++PPCA  +I+ G+ RVV  + DP+  VSG GL  + + GI + 
Sbjct: 67  VGATAYVTLEPCSHQGKTPPCADALIKAGVARVVYGMQDPNPEVSGNGLAKIKKAGIEII 126

Query: 128 R-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++ES+ +     ++ R  E   ++ +K+A+S D    M    S  IT   ++  V  L
Sbjct: 127 GPILESDCEALNPGFIKRMREGLPYVRVKLAMSMDGRTAMESGESQWITDSAARLDVQRL 186

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQE-------HSPMRIILDPHFKLSLDSKIIKT 239
           RAQSDAI+ GIG+VLAD+P +T R++   +         P+R+++D    +  ++KI+  
Sbjct: 187 RAQSDAIVTGIGSVLADNPSMTVRIDNDDQEADPKSVRQPIRVVMDTALSILPEAKILYP 246

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEG 294
           A  A V  V E  +        KK + + +         DL   +  L   G+  +L+E 
Sbjct: 247 ANQAWVFSVEEEVEAEHLELLTKKGVTVRFAPRGEDGRLDLLDAMEQLADAGINEVLLEA 306

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351
           GA +A  F+ + L+D II+Y +  ++G    P    PL+      +         G DV 
Sbjct: 307 GAELAGGFLEAGLIDEIIVYMAPKLLGSSARPLFKLPLDVMDEAVDLTLKSVRQVGQDVR 366

Query: 352 LEYIGKNL 359
           L YI K L
Sbjct: 367 LVYIPKYL 374


>gi|146310543|ref|YP_001175617.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Enterobacter sp. 638]
 gi|145317419|gb|ABP59566.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Enterobacter sp.
           638]
          Length = 367

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 187/368 (50%), Gaps = 20/368 (5%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG+++G G     G PHAEV AL  AGE
Sbjct: 2   QDEIYMARALKLAQRGRFTTHPNPNVGCVIVKDGVIVGEGFHYRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +ARGATAYVTLEPCSH+GR+PPC + +I+ G+ RVV  + DP+ +V+GRGL  L Q+GI 
Sbjct: 62  KARGATAYVTLEPCSHHGRTPPCCEALIDAGVARVVAAMQDPNPQVAGRGLYRLQQEGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M ++ +     +L R      +I LK+  S D    MA   S  +T   S+  V 
Sbjct: 122 VSHGLMMADTEALNKGFLKRMRTGFPYIQLKLGASLDGRTAMANGESQWVTSPQSRRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP +T R + L +             P+RI++D   +++  
Sbjct: 182 RLRAQSHAILTSSETVLADDPAMTVRWDELNQDTQALYPQENLRQPLRIVIDSQNRVTPA 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292
            +I++        +     +         ++I +       DL  L+ +L  + V S+ V
Sbjct: 242 HRIVQQPGET---LFARTKEDDRQWPEHVRSIMVPEHKGHLDLVVLMMLLGKQQVNSIWV 298

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGS 348
           E G  +A + + + LVD +I+Y +  ++G           LE+               G 
Sbjct: 299 EAGPTLAGALLQAGLVDELIVYVAPKLLGHEARGLFALPGLEKLADAPQLKFSDIRPVGP 358

Query: 349 DVCLEYIG 356
           DVCL    
Sbjct: 359 DVCLHLTP 366


>gi|313902290|ref|ZP_07835695.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           ;5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467441|gb|EFR62950.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           ;5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Thermaerobacter subterraneus DSM 13965]
          Length = 443

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 136/368 (36%), Positives = 195/368 (52%), Gaps = 15/368 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D  FM  AL  +    G T  NP V  +IV+DG+V+G G     G PHAEV+AL  A 
Sbjct: 38  EADRHFMRRALDLAARAGGRTHPNPMVGAVIVRDGVVVGEGYHRRAGEPHAEVEALRSAR 97

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           ++ARGAT YVTLEPC H+GR+PPC + I+  G+RRVVV + DPD RV+GRGL  L+Q G+
Sbjct: 98  DQARGATLYVTLEPCCHHGRTPPCTEAILAAGLRRVVVAMVDPDPRVAGRGLSVLAQAGV 157

Query: 125 IVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V   +E++  +    AY+  +V  R  +T K A++ D  I  A   S  ITG  ++  V
Sbjct: 158 EVAVGVEADRALRLNEAYVVHRVLGRPMVTAKYAMTLDGRIATARGESRWITGPRARRWV 217

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H LR + DAILVG+GTVLADDP LT R        P+R+ILD H +   D+++I+ A  +
Sbjct: 218 HRLRDRVDAILVGVGTVLADDPSLTVRW-HPGGRDPVRVILDSHARTPPDAQVIRAARHS 276

Query: 244 P---VIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGG 295
           P    + VT     V         + ++           +  LL  L  RG+  LLVEGG
Sbjct: 277 PAPTWVAVTPQAPAVRTARLEAAGVQVLRVPADPHGRVSILHLLRELASRGIVHLLVEGG 336

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDV 350
           A+V  SF  + LVD ++ + +  ++G    P P+ +  ++                G D 
Sbjct: 337 ASVHGSFFAAGLVDRVVAFIAPKLVGGRAAPGPIGDPGVDALAAAPALHRPTWRRIGEDW 396

Query: 351 CLEYIGKN 358
            +    ++
Sbjct: 397 MISGYLRD 404


>gi|117919545|ref|YP_868737.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Shewanella sp. ANA-3]
 gi|117611877|gb|ABK47331.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Shewanella sp. ANA-3]
          Length = 381

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 129/374 (34%), Positives = 191/374 (51%), Gaps = 22/374 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S  D + MS A++ +R     T  NPSV C+IVKD  ++G G     G PHAEV AL
Sbjct: 1   MNWSELDNQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE ARGATAYVTLEPCSHYGR+PPCA  +I  G++RVVV V+DP+ +V GRG+Q L 
Sbjct: 61  RMAGELARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLR 120

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI VD  +   E       ++ R       +T+K+A S D    ++   S  ITG  +
Sbjct: 121 DAGIEVDVGLHRDEAYALNLGFMKRMESGLPWVTVKLAASLDGKTALSNGVSKWITGPEA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR----------LNGLQEHSPMRIILDPHFK 229
           +  V  LR ++ A++ GI TVLAD P L  R          L+  Q   P+R+ILD   +
Sbjct: 181 RRDVQRLRLRACALVTGIETVLADAPSLNVRYSELGSLNLQLSEAQILQPLRVILDSRCR 240

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGR 285
           + + + ++  A+ +P+++V+        +A    ++  +     D    L  LL+ L  +
Sbjct: 241 MPITAALL--AIESPILLVSTEPYSPAFMAQLPAHVTCLQLPAIDGRISLPALLSYLG-K 297

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCV 341
               +L+E GA +A +FI   L D ++LY++  ++G  G        Y           V
Sbjct: 298 SCNQVLIEAGATLAGAFIGDGLADELVLYQAMKILGAQGRNLLELPDYQMMADIPTLKLV 357

Query: 342 RRDYFGSDVCLEYI 355
                G+D+     
Sbjct: 358 DERKVGADMRFTLR 371


>gi|262066887|ref|ZP_06026499.1| riboflavin biosynthesis protein RibD [Fusobacterium periodonticum
           ATCC 33693]
 gi|291379396|gb|EFE86914.1| riboflavin biosynthesis protein RibD [Fusobacterium periodonticum
           ATCC 33693]
          Length = 369

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 117/365 (32%), Positives = 197/365 (53%), Gaps = 17/365 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D +FM+ A+  +   +G  + NP V  ++VKDG +IG G     G PHAEV AL EAG
Sbjct: 4   TVDEKFMARAIELAFKGLGGVNPNPLVGAVVVKDGKIIGEGWHKKYGGPHAEVWALNEAG 63

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           EEA+GAT YVTLEPCSH G++PPCA+ I+E GI+R V+   DP+  V+G+G++ +   GI
Sbjct: 64  EEAKGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVIACIDPNPLVAGKGIKIIEDAGI 123

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++E E K     +L     K  ++ LK  ++ D  I      S  IT   ++ +V
Sbjct: 124 KVDFGILEKEAKEVNKVFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEAAREKV 183

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKT 239
             LR +  AI+VGI TVL D+P L  RLN    G+++ +P R+++DP+ +  ++SK +  
Sbjct: 184 QFLRTKFTAIMVGINTVLKDNPSLDSRLNEEKYGIEKRNPFRVVVDPNLESPIESKFLHF 243

Query: 240 ALLAPVIIVTENDDP--VLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGG 295
                 IIVT +D+        +      +IY + +   ++ +L  L    + S+L+EGG
Sbjct: 244 DDK-KAIIVTSSDNRNLEKVKEYENIGTRLIYLEGKVFKMEDILKELGKLNIDSVLLEGG 302

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV------RRDYFGSD 349
           + +  +      +D+  ++ +  +IG+     P   G+   +   V      + + +G +
Sbjct: 303 SGLISTAFKENAIDAGEIFIAPKIIGD-NSSIPFISGFNFDSMEDVFKLSNPKFNIYGDN 361

Query: 350 VCLEY 354
           + +E+
Sbjct: 362 ISIEF 366


>gi|148983580|ref|ZP_01816899.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
           SP3-BS71]
 gi|147923727|gb|EDK74839.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
           SP3-BS71]
          Length = 360

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 115/363 (31%), Positives = 184/363 (50%), Gaps = 13/363 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A++ ++   G  + NP V  +IVKD  +IG+G   + G PHAE  AL+   +   GA
Sbjct: 1   MKLAIKLAQKGAGYVNPNPMVGAIIVKDNHIIGQGYHEFFGGPHAERNALKNCRKSPVGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPC H+G++PPC   II+ GI RVV+   D +  VSG+G++ L +  + +   +
Sbjct: 61  TLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQVTVGI 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E+E    + ++     +   ++ +K A+S D  I      S  IT   ++  VH LR  
Sbjct: 121 LENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQLRHY 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
             AI+VG+ TV+ DDP LTCRL   +  +P+RII D H +  L SKI+KTA      I T
Sbjct: 181 VSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKTYIAT 238

Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
            ++D      ++     I+    +    DL  L+  L    + SL++EGG+ +  S +  
Sbjct: 239 SSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWSALEQ 298

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIGKNLC 360
           ++VD + +Y +  + G      P+    +  +   +R         G+D  +E      C
Sbjct: 299 QIVDELKIYIAPKIFGGS-AKFPVGGEGISLSNDAIRLKPYAFSQIGNDYLIESEVIYPC 357

Query: 361 LQE 363
            QE
Sbjct: 358 SQE 360


>gi|253699856|ref|YP_003021045.1| riboflavin biosynthesis protein RibD [Geobacter sp. M21]
 gi|251774706|gb|ACT17287.1| riboflavin biosynthesis protein RibD [Geobacter sp. M21]
          Length = 369

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 129/369 (34%), Positives = 198/369 (53%), Gaps = 11/369 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S    + M  AL  +R  VG T+ NP+V C+IV+DG V+G G     G PHAEV AL+ 
Sbjct: 1   MSDLHLKMMRLALCEARKGVGKTAPNPAVGCVIVRDGEVVGTGWHKKAGTPHAEVHALKA 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE+A GA AYVTLEPCSH+G++PPCA+ +IE  + RV V + DP+  VSG+G+Q L   
Sbjct: 61  AGEKAAGADAYVTLEPCSHFGKTPPCAKALIEAKVARVFVAMVDPNPLVSGKGIQMLKDA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E E +     ++     +   + LK A++ D     A   S  +T   ++ 
Sbjct: 121 GIAVEVGLLEEESRELNLPFIKWIQTRLPFVVLKSALTLDGKSATASGDSKWVTSDRARR 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +VH LR + DAI+VG+GTV  DDP LTCR+ G     P+R+I+D   ++ L + ++    
Sbjct: 181 EVHRLRGRLDAIMVGVGTVAKDDPLLTCRVPG--GKDPLRVIVDSTLRIPLHAAVLGVPS 238

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAA 297
            A  II T + D     A +   + I+ C       DL  L   L  RGV S+L+EGG+ 
Sbjct: 239 KAQTIIATCSGDEAKMQALKAHGVEILTCCESDGRVDLADLFVKLGARGVQSVLLEGGSH 298

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLE 353
           +A + + + L+D  +++ +  ++G  G+     EG            +R    G D+ +E
Sbjct: 299 LAGAALRAGLIDKCMIFLAPKLVGGAGMGLFAGEGATLMADAIRLEQMRVKRVGVDLLVE 358

Query: 354 YIGKNLCLQ 362
            +      Q
Sbjct: 359 GVPAKTKSQ 367


>gi|303241094|ref|ZP_07327603.1| riboflavin biosynthesis protein RibD [Acetivibrio cellulolyticus
           CD2]
 gi|302591354|gb|EFL61093.1| riboflavin biosynthesis protein RibD [Acetivibrio cellulolyticus
           CD2]
          Length = 362

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 117/354 (33%), Positives = 185/354 (52%), Gaps = 11/354 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           MS A+  ++   G T+ NP V  +IVKD  +I  G     G  HAEV A + A E+  G 
Sbjct: 1   MSRAIELAKKGWGRTNPNPLVGAVIVKDERIIAEGFHEVIGGAHAEVSAFKNAVEDVAGG 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YV LEPCSHYGR+PPCA+ IIE  I++VVV + DP+ +VSGRG+Q L   GI +   +
Sbjct: 61  TLYVNLEPCSHYGRTPPCAKAIIEAKIKKVVVAMIDPNPKVSGRGVQMLRDAGIEVEVGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E E K     ++   V K+  + LK A++ D  I      S  +T   S+  VH++R +
Sbjct: 121 LEDEAKKLNEIFINYVVNKKPFVILKTAMTIDGKIASVSGDSKWVTSEASRGYVHIIRDR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
             +I+VGI T++ D+P LT RLN      P+RI++D    +  DS+++ +   A V++ T
Sbjct: 181 VASIMVGINTIVKDNPMLTTRLNDKVGTDPIRIVVDSKGIIPEDSRVLNSDSKAVVVLAT 240

Query: 250 ENDD-PVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
            ++      +    K + II  D      DL KL   L    + S+L+EGG  +  + + 
Sbjct: 241 TSNILKEKEMYLIDKGVKIIKADGADGRVDLVKLTEELYKLEIDSILLEGGGNLNAAALE 300

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE 353
           + +VD  + + +  ++G     +P+E   +           V    +G D+ +E
Sbjct: 301 AGIVDKAMFFIAPKILGGKEAVTPVEGRGINLMSDAVKLKDVSVSRYGEDILVE 354


>gi|237749273|ref|ZP_04579753.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Oxalobacter
           formigenes OXCC13]
 gi|229380635|gb|EEO30726.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Oxalobacter
           formigenes OXCC13]
          Length = 363

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 114/359 (31%), Positives = 185/359 (51%), Gaps = 14/359 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
           +   +FM  AL  +R    LTS NP V C+IV+DG +IG G T   G  HAEV+AL +  
Sbjct: 2   ADHEKFMRRALELARKCSVLTSPNPRVGCVIVRDGEIIGEGFTQPVGGNHAEVEALNDVA 61

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
             G++ RGAT YVTLEPCSH GR+PPCA  +I   ++RVV  ++DP+V+V+G+GL  L  
Sbjct: 62  KRGQDCRGATVYVTLEPCSHRGRTPPCADALIRANVKRVVAAIEDPNVQVAGKGLAKLKA 121

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI ++  ++  E +     +L+R    R  + +K+A S D    +    S  IT   ++
Sbjct: 122 AGIEVLCGVLPDEARELNRGFLSRFEHGRPWVRMKVAASLDGKTALTNGESQWITSEAAR 181

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              H  R ++DAI+ GIGTV+ D+P L  RL       P RI++D   K  +D+++++  
Sbjct: 182 RDGHEWRMRADAIMTGIGTVIKDNPRLNVRLPD-TIRQPKRIVVDSQLKTPIDARVLENG 240

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGA 296
                 I + N  P    A ++K + +          DL  ++ +L  + +  + VE GA
Sbjct: 241 GD--TWIFSANASPYKIEAMQEKGVQVFSAINDTGRVDLADMMKVLAEKEINEVHVEAGA 298

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE---GYLEKNFMCVRRDYFGSDVCL 352
            +  + I +  VD +++Y +   +G G     L +      + +F         +D+ +
Sbjct: 299 TLNGALIQAGFVDEMLIYLAPCFLGSGKNMVSLNDIANLADKISFEFHEIRTIENDIRI 357


>gi|229092353|ref|ZP_04223525.1| Riboflavin biosynthesis protein [Bacillus cereus Rock3-42]
 gi|228691055|gb|EEL44822.1| Riboflavin biosynthesis protein [Bacillus cereus Rock3-42]
          Length = 350

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 119/341 (34%), Positives = 182/341 (53%), Gaps = 10/341 (2%)

Query: 22  VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
            G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARG T YVTLEPCSH
Sbjct: 2   KGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARGGTIYVTLEPCSH 61

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140
           +GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++  + E E K     
Sbjct: 62  HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEV 121

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +    + KR  +T+K  V+ D  I      S  IT   ++ +VH +R ++ AILVG  TV
Sbjct: 122 FNKYIMTKRPFVTIKSGVTLDGKIATFLSDSKWITSTEARQEVHQIRNENAAILVGANTV 181

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
             D+P LT R+      +P+R+ILD   ++ +++ ++        I  T N       A 
Sbjct: 182 QKDNPSLTTRIP--NGRNPIRVILDSTLRIPMEANVVTDEEAPTWIFTTSNHAAEKRKAL 239

Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
               + +         +L ++L +L  +GV+SLL+EGG  V  SFI + L+D +ILY + 
Sbjct: 240 ESAGVKVFVISGEKHINLYEMLDVLGQKGVSSLLIEGGGEVNASFIENELMDKLILYFAP 299

Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
            +IG    PS +E   + K    +       D+    +GK+
Sbjct: 300 KIIGGRLAPSFVEGTGITKMQDAIEFK----DISFTQVGKD 336


>gi|311030745|ref|ZP_07708835.1| riboflavin biosynthesis protein RibD [Bacillus sp. m3-13]
          Length = 367

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 127/358 (35%), Positives = 188/358 (52%), Gaps = 13/358 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG- 64
            D  +M  A+  ++   G TS NP V  ++VK+G ++G G     G  HAEV A++ AG 
Sbjct: 2   DDQYYMKFAIDLAKRATGQTSPNPVVGSVVVKNGEIVGFGAHLRAGEAHAEVNAIQMAGV 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           ++A G+T YVTLEPCSH+G++PPC+  +I+  + RVV+   DP+  V+GRG++ L + GI
Sbjct: 62  DKANGSTVYVTLEPCSHFGKTPPCSDLLIQSQVSRVVIASTDPNPLVAGRGIEKLRKAGI 121

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V+  + E E       +       +  +TLK A S D         S  ITG  S+  V
Sbjct: 122 EVELGVCEEEALALNQVFFHHIKTGKPFVTLKTAASLDGKTATHRNESKWITGPDSRLDV 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  R Q DAILVG+GTVLADDP L  RL      +P+RIILD H +  LDSK++ T   A
Sbjct: 182 HQYRHQHDAILVGVGTVLADDPSLDTRLPNG-GKNPIRIILDSHLRTPLDSKVL-TDGKA 239

Query: 244 PVIIVTENDDPVLALAF----RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           P  IVT +   +  +AF        +  +  +  ++ +LL++L    +TSL VEGGA V 
Sbjct: 240 PTWIVTGSKPDLEKMAFLEGQEGVRVFTLPMEKVEVNELLSLLGEEEITSLFVEGGATVN 299

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCL 352
            SF+  + +  +I Y +  +IG    P+ +             F        G D+ +
Sbjct: 300 GSFLKEKAIQQLITYIAPKLIGGKAAPTLVGGEGFATMDEVMEFEIKEVTKIGPDLKI 357


>gi|293390135|ref|ZP_06634469.1| riboflavin biosynthesis protein RibD [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950669|gb|EFE00788.1| riboflavin biosynthesis protein RibD [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 374

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 131/372 (35%), Positives = 188/372 (50%), Gaps = 19/372 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D  FM  AL  ++     T+ NPSV C++VK+G ++G+G     G PHAEV AL E
Sbjct: 5   FSPQDVAFMQLALDLAKQGEFTTTPNPSVGCVLVKNGKIVGKGFHFKAGEPHAEVMALRE 64

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPC H+GR+PPCA+ + E G+ +V+  + DP+ +V+G+GLQ L+  
Sbjct: 65  AGENARGATAYVTLEPCFHFGRTPPCAKGLAEAGVSKVIAAMYDPNPQVAGKGLQILADA 124

Query: 123 GIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI     +  E        +L R    +  + LK+A+S D    MA   S  ITG  ++ 
Sbjct: 125 GIQSAVGLLEEKAEQLNKGFLKRMRTGKPFVQLKLAMSIDGKTAMASGESKWITGAQARM 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V   RA++ AIL    TVLADDP L  R   L               P+R+ILD   K+
Sbjct: 185 DVQQYRAKASAILSTSQTVLADDPSLNVRWAELPNETQARYAQENLRQPVRVILDSTHKV 244

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTS 289
             D K+  T   APV +  E+D  +       + + +        L+ L+T L  R + +
Sbjct: 245 RSDFKVFLTD--APVWLAGEDDFQLTGFPASTEYLKLDRSHGESRLQALMTELGKRQINT 302

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDY 345
           L VE GA +A + I   LVD +I+Y +  ++G+          L        +     + 
Sbjct: 303 LWVEAGATLAGALIAENLVDELIIYMAPKLLGDHARDLCHLPHLTRLADAPLWQLQSCEP 362

Query: 346 FGSDVCLEYIGK 357
            G D+ L YI K
Sbjct: 363 TGDDLKLIYIRK 374


>gi|52425429|ref|YP_088566.1| RibD protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307481|gb|AAU37981.1| RibD protein [Mannheimia succiniciproducens MBEL55E]
          Length = 373

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 117/373 (31%), Positives = 192/373 (51%), Gaps = 21/373 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            +  D  FM  A+  +      T+ NPSV C++VK G ++G+G     G PHAEV A+ E
Sbjct: 4   FTEQDRAFMQLAIELAEKGQFTTTPNPSVGCVLVKQGEIVGKGFHFKAGEPHAEVMAMRE 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ A+GATAYVTLEPCSH+GR+PPCA+ +IE G+ +V+  ++DP+  V+G+GL+ L Q 
Sbjct: 64  AGKNAKGATAYVTLEPCSHFGRTPPCAKGLIEAGVVKVIAAMEDPNPSVAGQGLKMLQQA 123

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI     +++ + +     +L R      ++ LK+A++ D     +   S  ITG  ++ 
Sbjct: 124 GIETAVGLLQEQAERLNRGFLKRMRTGLPYVQLKMAMTIDGRTATSTGESQWITGESARI 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V   RA++ AIL   GTVLAD+P L  R     E             P+R+I+D   ++
Sbjct: 184 DVQQERAKASAILSASGTVLADNPSLNVRWEQFPEQLKADYKKETVRQPVRVIIDSKQQI 243

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTS 289
           S    + K  + +PV +       +       + I ++    +  L+ L+  L  R + S
Sbjct: 244 SSQLNLFK--IDSPVWLAGIQPRDLTDFPANCEIICLMPEKEQSLLQALMIELGKRQINS 301

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRD 344
           + VE GA +A + I   LVD ++LY +  ++G+       +P  L +      +     +
Sbjct: 302 VWVEAGAKLAGALIEQNLVDELVLYIAPKLLGDEAKGLCHLPH-LTKLADAPLWRLQSME 360

Query: 345 YFGSDVCLEYIGK 357
             G D+ + Y+ K
Sbjct: 361 KVGDDIKMIYMRK 373


>gi|289549140|ref|YP_003474128.1| riboflavin biosynthesis protein RibD [Thermocrinis albus DSM 14484]
 gi|289182757|gb|ADC90001.1| riboflavin biosynthesis protein RibD [Thermocrinis albus DSM 14484]
          Length = 353

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 130/353 (36%), Positives = 189/353 (53%), Gaps = 9/353 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  +R   GLT  NP+V C++VKDG +I  G     G PHAEV AL +AG+ A+ +
Sbjct: 1   MGRALELARLRKGLTHPNPTVGCVVVKDGKIISEGYHERAGAPHAEVVALSKAGQNAKDS 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPCSHYGR+PPC   IIE G++RVVV   DP+ +V G G++ L   GI +   +
Sbjct: 61  TLYVTLEPCSHYGRTPPCTNAIIEAGVKRVVVATLDPNPKVMGSGIERLRAAGIQVDVGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E E +     +     + R +ITLK A S D  +      S  IT   S+   H LRA+
Sbjct: 121 LEEEARQLNEDFFVYITQNRPYITLKWAQSIDGSLATKTGDSKWITSRESREFAHRLRAE 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           + AILVG+ TV+ DDP LT R   L E  P+R++LDP+ +  L + ++     A  I+VT
Sbjct: 181 ATAILVGVNTVVKDDPLLTVR-AFLWERQPIRVVLDPYLRTPLQANLMVDTS-AKTILVT 238

Query: 250 ENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
            +             ++++  +C     DL+ L+  +  + +  L+VEGGA     FI  
Sbjct: 239 CSQKEDKVKKLEDMGVSVVKAECVKGRVDLRWLMRWMHQQEIMHLMVEGGARTLEGFIEE 298

Query: 306 RLVDSIILYRSQIVIGEG-GIPSPLEEGYLEK-NFMCVRRDYFGSDVCLEYIG 356
            L D I+++   ++IG G  + SP  E  ++       R    G DV +EY  
Sbjct: 299 GLWDRIVVFLGPLLIGNGIRVRSPGAEKLMDAIPLRKRRLWQLGEDVAIEYTR 351


>gi|237739215|ref|ZP_04569696.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium sp. 2_1_31]
 gi|229423815|gb|EEO38862.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium sp. 2_1_31]
          Length = 369

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 199/365 (54%), Gaps = 17/365 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D +FM+ A+  +   +G  + NP V  ++VKDG +IG G     G PHAEV AL EAG
Sbjct: 4   TVDKKFMARAIELAFRGLGGVNPNPLVGAVVVKDGKIIGEGWHKKYGGPHAEVWALNEAG 63

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           EEA+GAT YVTLEPCSH G++PPCA+ I+E GI+R V+   DP+  V+G+G++ +   GI
Sbjct: 64  EEAKGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVIACIDPNPLVAGKGIKIIEDAGI 123

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++E E K     +L     K  ++ LK  ++ D  I      S  IT  +++ +V
Sbjct: 124 KVDLGILEKEAKEVNKVFLKYIENKIPYLFLKCGITLDGKIATRRGKSKWITNELAREKV 183

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKT 239
             LR +  AI+VGI TVL D+P L  RL+    G+++ +P R+++DP+ +  +DSK +  
Sbjct: 184 QFLRTKFSAIMVGINTVLKDNPSLDSRLDEEKFGIEKRNPFRVVVDPNLESPIDSKFLHF 243

Query: 240 ALLAPVIIVTENDDP--VLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGG 295
                 IIVT ND+        +      +IY + +   +K +L  L    + S+L+EGG
Sbjct: 244 NDN-KAIIVTSNDNRNLEKVKEYENLGTRLIYLEGKIFKMKDILKELGKLNIDSVLLEGG 302

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV------RRDYFGSD 349
           + +  +     ++D+  ++ +  +IG+     P   G+   +   V      + + +G +
Sbjct: 303 SGLISTAFKENVIDAGEIFIAPKIIGD-NSSIPFINGFNFDSMEEVFKLSNPKFNIYGDN 361

Query: 350 VCLEY 354
           + +E+
Sbjct: 362 ISVEF 366


>gi|152979034|ref|YP_001344663.1| riboflavin biosynthesis protein RibD [Actinobacillus succinogenes
           130Z]
 gi|150840757|gb|ABR74728.1| riboflavin biosynthesis protein RibD [Actinobacillus succinogenes
           130Z]
          Length = 375

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 120/374 (32%), Positives = 186/374 (49%), Gaps = 19/374 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            +  D  +M  AL  +R     T+ NP+V C++VK   ++G G     G PHAEV A+ +
Sbjct: 4   FTEQDQAYMQLALDLARRGRFTTTPNPNVGCVLVKHNKIVGTGFHFRAGEPHAEVMAIRD 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+  +GATAYVTLEPCSHYGR+PPCAQ +I  G+ +V++   DP+ +V+GRGL+ L   
Sbjct: 64  AGDNTQGATAYVTLEPCSHYGRTPPCAQGLINAGVTKVIIATQDPNPQVAGRGLKMLQDA 123

Query: 123 GIIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI     + +E  +     +L R       + LK+A+S D    MA   S  ITG  ++ 
Sbjct: 124 GIESAVGLLAEKAEAVNLGFLKRMRTGMPFVQLKLAMSLDGRTAMASGESKWITGEAARA 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V   RAQ+ AIL    TVLADDP+L  R   L +             P+R+ILD   ++
Sbjct: 184 DVQEGRAQASAILSTAETVLADDPQLNVRWEQLPQAVQIEYSLTDLRQPIRVILDRRHRV 243

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTS 289
               ++ +  + +PV +V+E    + A     ++I +   +    L  L+  L  R + +
Sbjct: 244 QPHHRLFR--IESPVWLVSEKPRDMSAFPAFCEHIQLKTTENPTALYALMQELGKRQINT 301

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI---PSP-LEEGYLEKNFMCVRRDY 345
           + VE GA +A + I   L D +I+Y +  ++G         P L        +       
Sbjct: 302 IWVEAGATLAGALIEQNLADELIIYMAPKLLGHQARGLCKLPHLTRLADAPQWTLQSAVK 361

Query: 346 FGSDVCLEYIGKNL 359
            G D+   Y  K++
Sbjct: 362 IGEDLKTVYTRKSV 375


>gi|197119395|ref|YP_002139822.1| bifunctional
           2,
           5-diamino-6-(5'-phosphoribosylamino)-4-(3H)-pyrimidinone
           deaminase/5-amino-6-(5'-phosphoribosylamino)uracil
           reductase [Geobacter bemidjiensis Bem]
 gi|197088755|gb|ACH40026.1| 2,5-diamino-6-(5'-phosphoribosylamino)-4-(3H)-pyrimidinone
           deaminase and 5-amino-6-(5'-phosphoribosylamino)uracil
           reductase [Geobacter bemidjiensis Bem]
          Length = 369

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 127/369 (34%), Positives = 200/369 (54%), Gaps = 11/369 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++    + M  AL  +R  +G T+ NP+V C+IV++G V+G G     G PHAEV AL+ 
Sbjct: 1   MADLHLKMMRLALAEARKGIGKTAPNPAVGCVIVRNGEVVGTGWHKKAGTPHAEVHALKA 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG++A GA AYVTLEPCSH+G++PPCA+ +IE  + RV V + DP+  VSGRG+Q L   
Sbjct: 61  AGDKAAGADAYVTLEPCSHFGKTPPCAKALIEARVARVFVAMVDPNPLVSGRGIQMLKDA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   +++ E +     ++     K  ++ LK A++ D     A   S  +T   ++ 
Sbjct: 121 GIAVEVGLLKEESRELNLPFIKWIQTKLPYVVLKSALTLDGKSATASGDSKWVTSDRARR 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +VH LR + DAI+VG+GTV+ DDP LTCR+ G     P+R+I+D   ++ L + I+    
Sbjct: 181 EVHRLRGRLDAIMVGVGTVVKDDPLLTCRVPG--GKDPLRVIVDSTLRIPLHAAILGVKS 238

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAA 297
            A  +I T + D     A +   + I+ C       DL  L   L  RGV S+L+EGG+ 
Sbjct: 239 KAETVIATCSCDHAKMEALKAHGVEILTCCESDGRVDLADLFEKLGARGVQSVLLEGGSH 298

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLE 353
           +A + + + L+D  +++ +  ++G  G+     EG            VR    G D+ +E
Sbjct: 299 LAGAALRAGLIDKCMIFLAPKLVGGAGMGLFAGEGATLMADAIRLEQVRVKRVGVDLLVE 358

Query: 354 YIGKNLCLQ 362
            +      Q
Sbjct: 359 GVPVKTKSQ 367


>gi|2493562|sp|P70814|RIBD_BACAM RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
           RecName:
           Full=Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase; Includes: RecName:
           Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|1592688|emb|CAA65189.1| deaminase [Bacillus amyloliquefaciens]
          Length = 371

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 116/362 (32%), Positives = 177/362 (48%), Gaps = 11/362 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            +  +M+ A+  +R   G T  NP V  ++VK   ++G G     G  HAEV A+  AG 
Sbjct: 1   MEEYYMNTAIELARRGEGQTQPNPLVGAVVVKKRQIVGMGAHLQYGEAHAEVHAINMAGS 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            A+GA  YVTLEPCSHYG++PPCA+ I++ GI+RV + V+DP+  V+G+G+  L + GI 
Sbjct: 61  LAKGADLYVTLEPCSHYGKTPPCAELIMKSGIKRVFIAVEDPNPLVAGKGITMLEEAGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   ++  + +     +L        ++TLK A S D         S  IT   ++    
Sbjct: 121 VKTGLLRQQAEELNKMFLHFMRTGLPYVTLKAAASLDGKTATETGDSKWITSEAARLDAQ 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             R     ILVG GTV AD+P LTCRL       P+R+ILD    +   + ++ T   AP
Sbjct: 181 QYRKSHQRILVGAGTVKADNPSLTCRLPDA-VKQPVRVILDTKLTVPETANVL-TDGAAP 238

Query: 245 VIIVTENDDPVL---ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
             I T     V     L      +  +  D   + ++L+IL   G+ S+ VEGGA+V  S
Sbjct: 239 TWIFTAAGSDVRKKDRLTALGIKVFTLETDRIHIPEVLSILAENGIMSVYVEGGASVHGS 298

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIG 356
           F+ +   D +  Y + I+IG    PS +     +      +    +    G D+ L  I 
Sbjct: 299 FVKAGCFDELHFYFAPILIGGTLAPSLISGEGFQSMKDVPHLQFTQITQIGPDIKLTAIP 358

Query: 357 KN 358
           K+
Sbjct: 359 KD 360


>gi|261401666|ref|ZP_05987791.1| riboflavin biosynthesis protein RibD [Neisseria lactamica ATCC
           23970]
 gi|269208249|gb|EEZ74704.1| riboflavin biosynthesis protein RibD [Neisseria lactamica ATCC
           23970]
          Length = 369

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 133/366 (36%), Positives = 190/366 (51%), Gaps = 13/366 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL+ +      TS NP V C+I + G V+G+G     G PHAEV AL +
Sbjct: 2   FSETDISMMQNALKLAALGRFSTSPNPRVGCVIAQGGQVVGQGFHVKAGEPHAEVHALRQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   
Sbjct: 62  AGEMAKGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  +  ++ESE +     +L+R   +R  + LK AVS D    ++   S  ITG  ++ 
Sbjct: 122 GIKTECGLLESEARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V +LRA+S A+L GIGTVLAD+P L  R        P RI+LD   +L  +S ++ T  
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-TFATLRQPARIVLDSRLRLPQNSHLL-TDG 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGG 295
            +P +I T   D      +RK     I           DL +L+ +L   G   ++VE G
Sbjct: 240 QSPTLIATLERDEGRLSPYRKHAHVRILMPSETADGKIDLHRLMRLLADEGYGEVMVEAG 299

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           A +  +F+   L D I+LYRS  ++G G     +P           +  V  +  G DV 
Sbjct: 300 AKLTSAFLAEDLADEIVLYRSPKILGSGKDLFSLPENRAALSAPPLWTPVSTEILGHDVK 359

Query: 352 LEYIGK 357
             +   
Sbjct: 360 TVFRKN 365


>gi|296126557|ref|YP_003633809.1| riboflavin biosynthesis protein RibD [Brachyspira murdochii DSM
           12563]
 gi|296018373|gb|ADG71610.1| riboflavin biosynthesis protein RibD [Brachyspira murdochii DSM
           12563]
          Length = 368

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 121/362 (33%), Positives = 182/362 (50%), Gaps = 16/362 (4%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
            ++M  A+  ++   G TS NP V  +IVKD  +IG G     G  HAE+ A  +A   G
Sbjct: 7   EKYMRMAIEEAKKGEGFTSPNPLVGAVIVKDDKIIGIGYHQKYGENHAEINAFLDAQKKG 66

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E+  GA  YVTLEPCSHYG++PPCA  II+  I++V++   D + +V+G G++ L   GI
Sbjct: 67  EDVEGAAIYVTLEPCSHYGKTPPCADAIIKNKIKKVIIGCVDSNPKVAGNGIKKLKDAGI 126

Query: 125 IVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V   +  E        +      KR  + +K A++ D  I  +   S  IT   ++   
Sbjct: 127 EVVVNVLEEECRKLNEVFFYYIANKRPFVVMKYAMTIDGKIASSSGKSKWITSEKAREHS 186

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  R +  AI+VGI TV+ D+P L CRL      +P+RIILD   K+ L+S I KTA   
Sbjct: 187 HRFRNKYSAIMVGINTVIEDNPTLNCRLP--NTRNPIRIILDSSLKIDLNSNICKTAKEI 244

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVG-RGVTSLLVEGGAAV 298
              I T ++D           I II  +      +LK+L+ IL   + + S+ VEGGA++
Sbjct: 245 KTFIATISNDEKKIKEIESLGIEIIKTESDNGRVNLKELMKILGEDKNIDSVYVEGGASL 304

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN---FMCV--RRDYFGSDVCLE 353
             S I  RLV+ +++Y +  + G     SP+    ++     F  +         D+ LE
Sbjct: 305 HASLIEERLVNKVLVYIAPKIFGGIKAKSPIGGEGIDDPNNAFKLIGGDITKIDEDLFLE 364

Query: 354 YI 355
           Y 
Sbjct: 365 YY 366


>gi|261341007|ref|ZP_05968865.1| riboflavin biosynthesis protein RibD [Enterobacter cancerogenus
           ATCC 35316]
 gi|288316872|gb|EFC55810.1| riboflavin biosynthesis protein RibD [Enterobacter cancerogenus
           ATCC 35316]
          Length = 367

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 123/365 (33%), Positives = 184/365 (50%), Gaps = 20/365 (5%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ A++ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEIYMARAMKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +ARGATAYVTLEPCSH+GR+PPC + +I  G+ RVV  + DP+ +V+GRGL  L Q+GI 
Sbjct: 62  KARGATAYVTLEPCSHHGRTPPCCEALIAAGVSRVVASMQDPNPQVAGRGLYRLQQEGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M  + +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMQDAEALNKGFLKRMRTGFPYIQLKLGASLDGRTAMANGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP +T R + L               P+RI++D   +++ +
Sbjct: 182 RLRAQSHAILTSSETVLADDPAMTVRWDELNADTQALYPQENLRQPLRIVIDSQNRVTPE 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292
            +I+         +     D         ++I +   +   DL  L+ +L  + V S+ V
Sbjct: 242 HRIVHQPGET---LFARTKDDSRQWPEGVRSIMVPEHNGHLDLVVLMMLLGKQQVNSIWV 298

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGS 348
           E G  +A + + + LVD +I+Y + +++G       +  G                  G 
Sbjct: 299 EAGPTLAGALLQAGLVDELIVYVAPVLLGNDARGLFVLPGLEKLADAPQLKFSEIRPVGP 358

Query: 349 DVCLE 353
           DVCL 
Sbjct: 359 DVCLH 363


>gi|238760662|ref|ZP_04621787.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia aldovae
           ATCC 35236]
 gi|238701127|gb|EEP93719.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia aldovae
           ATCC 35236]
          Length = 369

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 187/367 (50%), Gaps = 18/367 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     TS NP+V C++V++G ++G G     G PHAEV AL  AGE+
Sbjct: 4   DEFYMARAFELARLGRFTTSPNPNVGCVLVREGEIVGEGYHLRAGEPHAEVHALRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+ +V+GRGL  L Q GI +
Sbjct: 64  ARGATAYVTLEPCSHHGRTPPCADALVAAGVVRVVAAMQDPNPQVAGRGLYLLKQAGIAV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R      ++ LK+A S D    MA   S  IT   ++  V  
Sbjct: 124 DHGVMLAEAEAVNRGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP LT R   L               P+RIILD H +++ + 
Sbjct: 184 FRAQSAAILSTSATVLADDPSLTVRWQELDAQTQALYPQDRLRQPVRIILDSHNRVTPEH 243

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           K+I+     P  +   + D        ++ +   + +  DL  L+  L  R + S+ VE 
Sbjct: 244 KVIQQD--GPCWLARVDADEQPWPDNVEQLLLPRHNNGVDLVLLMMQLARRQINSIWVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           G  +A + + + +VD +ILY +  ++G         + L +      F+       G D+
Sbjct: 302 GPQLAGALLQAGVVDELILYIAPKLLGSDARGLCHLAGLTQLRDAPEFVFSDVRQVGPDL 361

Query: 351 CLEYIGK 357
            L    K
Sbjct: 362 RLRLKPK 368


>gi|326201832|ref|ZP_08191702.1| riboflavin biosynthesis protein RibD [Clostridium papyrosolvens DSM
           2782]
 gi|325987627|gb|EGD48453.1| riboflavin biosynthesis protein RibD [Clostridium papyrosolvens DSM
           2782]
          Length = 367

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 115/366 (31%), Positives = 187/366 (51%), Gaps = 12/366 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           +    +M  A   S+   G T+ NP V  +IVKDG +I  G     G  HAEV A + A 
Sbjct: 2   NIHEFYMKRAFEISKGGWGRTNPNPLVGAVIVKDGEIISEGFHEALGGAHAEVCAFQNAT 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            +  GAT YV LEPCSHYGR+PPCA+ I E GI+ VVV + DP+ +VSG+G+Q L    I
Sbjct: 62  SDISGATIYVNLEPCSHYGRTPPCAKAIAESGIKEVVVAMVDPNPKVSGKGIQILKDANI 121

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            ++  ++E E +     ++    ++   + +K A++ D  I      S  I+   S+  V
Sbjct: 122 NVIVGVLEEEARRLNEIFIHYITKQLPFVIMKTAMTLDGKIASVTGDSRWISSEPSREYV 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H +R +  +I+VG+ T++ D+P LT R +      P+RI++D   ++ +DS++I     A
Sbjct: 182 HKIRNRVSSIMVGVNTIIKDNPSLTARPSSGDGIDPVRIVVDSRGRIPMDSRVINGDSNA 241

Query: 244 PVIIVTE---NDDPVLALAFRKKNI--NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
            +I+ T    N D    L  R   I   I      +L +L+  L    + S+L+EGG  +
Sbjct: 242 GLILATTDRINKDKETQLLSRGVRIIKTIEKSGKVNLGELMRELYKLEIDSVLLEGGGNL 301

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
             S + + +V+ ++ + S  +IG     +P+    +E+         +R + F  DV +E
Sbjct: 302 NFSALEAGIVNKVMTFVSPKIIGGSSAVTPVGGEGIEEMKDAIALSDIRVEGFDRDVLIE 361

Query: 354 -YIGKN 358
            YI   
Sbjct: 362 GYIADE 367


>gi|229174066|ref|ZP_04301602.1| Riboflavin biosynthesis protein [Bacillus cereus MM3]
 gi|228609398|gb|EEK66684.1| Riboflavin biosynthesis protein [Bacillus cereus MM3]
          Length = 350

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 118/341 (34%), Positives = 183/341 (53%), Gaps = 10/341 (2%)

Query: 22  VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
            G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARG T YVTLEPCSH
Sbjct: 2   KGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARGGTIYVTLEPCSH 61

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140
           +GR+ PCA+ I++ GI++VVV   DP+  VSG G++ L   GI ++  + E E K     
Sbjct: 62  HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGSGIKILQDAGIEVLVGVCEEESKKMNEV 121

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R ++ AILVG  TV
Sbjct: 122 FNKYIMTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTV 181

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
             D+P LT R+      +P+R+ILD   ++ +++ ++        I  T N       A 
Sbjct: 182 QKDNPSLTTRIP--NGRNPIRVILDSTLRIPMEANVVADREAPTWIFTTSNYAAEKRKAL 239

Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
               + +         +L ++L +L  +GV+SLL+EGG  V  SFI ++L+D +ILY + 
Sbjct: 240 ENAGVKVFVTSGEKHINLYEMLDVLGRKGVSSLLIEGGGEVNASFIENKLMDKLILYFAP 299

Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
            +IG    PS +E   + K    +       D+    +GK+
Sbjct: 300 KIIGGRLAPSFVEGTGITKMQDAIEFK----DISFTQVGKD 336


>gi|16079385|ref|NP_390209.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310245|ref|ZP_03592092.1| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221314569|ref|ZP_03596374.1| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221319491|ref|ZP_03600785.1| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221323767|ref|ZP_03605061.1| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|132565|sp|P17618|RIBD_BACSU RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
           RecName:
           Full=Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase; Includes: RecName:
           Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|40085|emb|CAA35878.1| unnamed protein product [Bacillus subtilis]
 gi|410125|gb|AAA67481.1| ribG [Bacillus subtilis subsp. subtilis str. 168]
 gi|2634763|emb|CAB14260.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|34873545|gb|AAQ83285.1| RibG [Cloning vector pRFN4]
          Length = 361

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 118/355 (33%), Positives = 174/355 (49%), Gaps = 9/355 (2%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            +  +M  AL  ++   G T +NP V  ++VKDG ++G G     G  HAEV A+  AG 
Sbjct: 1   MEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGA 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            A GA  YVTLEPCSHYG++PPCA+ II  GI+RV V + DP+  V+GRG+  + + GI 
Sbjct: 61  HAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           + + ++  + +     +L        ++TLK A S D  I  +   S  IT   ++    
Sbjct: 121 VREGILADQAERLNEKFLHFMRTGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQ 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             R    +ILVG+GTV AD+P LTCRL  +    P+R+ILD    +  D+K+I   +   
Sbjct: 181 QYRKTHQSILVGVGTVKADNPSLTCRLPNVT-KQPVRVILDTVLSIPEDAKVICDQIAPT 239

Query: 245 VIIVTENDDPVLALAFRKKNINI--IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            I  T   D           +NI  +  +   +  +L IL   G+ S+ VEGG+AV  SF
Sbjct: 240 WIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVHGSF 299

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCL 352
           +       II Y +  +IG    PS +     +                G D+ L
Sbjct: 300 VKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKL 354


>gi|323488255|ref|ZP_08093505.1| riboflavin biosynthesis protein RibD [Planococcus donghaensis
           MPA1U2]
 gi|323398113|gb|EGA90909.1| riboflavin biosynthesis protein RibD [Planococcus donghaensis
           MPA1U2]
          Length = 367

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 121/364 (33%), Positives = 193/364 (53%), Gaps = 12/364 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S+ D  +M+ AL  ++   G T  NP V  +IV D  ++G G     G PHAE+ AL  
Sbjct: 1   MSNHD-FYMNLALTNAQTLKGQTDPNPLVGSVIVNDNRIVGIGTHLKAGEPHAEIHALRM 59

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ ++GAT YVTLEPCSH+GR+ PCAQ II+ GI +VV+   DP+  V+G G++ L + 
Sbjct: 60  AGDMSQGATIYVTLEPCSHFGRTGPCAQAIIDAGIEKVVIATLDPNPIVAGNGVRMLKEA 119

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI ++  + E E       +    V K   +TLK A + D  I      S  IT   ++ 
Sbjct: 120 GIEVIVGVREEEAIKMNEVFNKFIVTKTPFVTLKAASTLDGKIATHSLDSKWITAEEARL 179

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VHL+R+Q  AILVG+GTV+ DDPELT R++     +P+RI+LD   ++ LDSK++   +
Sbjct: 180 DVHLMRSQHMAILVGVGTVIEDDPELTARIS--NGRNPIRIVLDSTLRIPLDSKLVTDGI 237

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCD---CRDLKKLLTILVGRGVTSLLVEGGAAV 298
           +   I  ++N D     A  +  + I         D+  ++  L  +G++SL +EGG  +
Sbjct: 238 VDTWIFTSQNYDAEKRQALEELGVLIFETSHDTQVDVIDVVRTLGEKGISSLFIEGGGTI 297

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLE 353
             +F+ + L+D ++ Y +  ++G    P+ +E   +E     +          G D    
Sbjct: 298 NAAFLENDLIDKVVFYFAPKLVGGKLAPTFIEGTGVEWMKDAIELRDGEFSKVGKDFKFT 357

Query: 354 YIGK 357
              +
Sbjct: 358 GYPE 361


>gi|163789730|ref|ZP_02184167.1| Riboflavin biosynthesis protein RIBD (pirimidine deaminase and
           pirimidine reductase) [Carnobacterium sp. AT7]
 gi|159874952|gb|EDP69019.1| Riboflavin biosynthesis protein RIBD (pirimidine deaminase and
           pirimidine reductase) [Carnobacterium sp. AT7]
          Length = 351

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 123/352 (34%), Positives = 191/352 (54%), Gaps = 14/352 (3%)

Query: 18  SRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLE 77
           +R   G T+ NP V  +IVK G VIG+G     G PHAEV A+  A E+  GAT YVTLE
Sbjct: 2   ARKGKGWTTPNPLVGAIIVKGGRVIGQGYHQKYGQPHAEVNAIASAKEDVTGATLYVTLE 61

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKI 136
           PCSH+G++PPC+  +I+  I+RVVV   DP+  V+G+G++ L   GI +V  ++E E + 
Sbjct: 62  PCSHFGKTPPCSDLLIDKNIKRVVVGTLDPNPLVAGKGIERLRSNGIEVVTGVLEEESQK 121

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
               ++   V K   + +K A+S D  I      S  I+G  S+ QVH LR +   I+VG
Sbjct: 122 LNEIFIKYIVTKEPFVVMKNAMSLDGKIATVTGESQWISGESSRKQVHSLRHELAGIMVG 181

Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE-NDDPV 255
           I T++ DDP+LT R   L   +P+RI++D   ++ + SK++     A  I+ T    +  
Sbjct: 182 IETIIKDDPQLTSRT--LNSRNPIRIVVDSQLRIPIASKVLTQQDKAKTIVATTRRANKE 239

Query: 256 LALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311
                ++ +I ++    +    DLK+L+ +L  +G+ S+L+EGGA +  S +   +VD I
Sbjct: 240 KLDTLKQMDIEVLVTKEKGGRVDLKELMKLLGAKGIDSILLEGGANLNFSALEEGIVDKI 299

Query: 312 ILYRSQIVIGEGGIPSPLEEGY---LEKNFMCVRRD--YFGSDVCLE-YIGK 357
             Y +  +IG     + +E      L+  F   R      G D+ +E YI K
Sbjct: 300 QSYIAPKIIGGKEAKTAVEGAGVHSLKNAFQIDRMTPVMVGEDLFVEGYIIK 351


>gi|163815505|ref|ZP_02206878.1| hypothetical protein COPEUT_01670 [Coprococcus eutactus ATCC 27759]
 gi|158449142|gb|EDP26137.1| hypothetical protein COPEUT_01670 [Coprococcus eutactus ATCC 27759]
          Length = 382

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 185/371 (49%), Gaps = 21/371 (5%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
            F+  +M  A+  ++   G  + NP V  +IVK G +IG G     G  HAE  A     
Sbjct: 9   EFNLAYMRRAIELAKKGTGAVNPNPLVGAVIVKAGRIIGEGYHVRYGELHAERAAFASLA 68

Query: 65  E--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           +  EA GA  YVTLEPC H+G+ PPC   IIE  IR+V    DDP+  V+G+G + L   
Sbjct: 69  DPAEAEGAVMYVTLEPCCHFGKQPPCVDAIIEHKIRKVYCGSDDPNAMVAGKGFRRLRDA 128

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +    ++ E       +    + K+ ++T+K A++ D  I      S  ITG  S+ 
Sbjct: 129 GIEVYTHCLKDECDALNDIFFKYIIAKKPYVTMKYAMTMDGRIATHIGASKWITGEASRA 188

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE------HSPMRIILDPHFKLSLDSK 235
            V  LR +   I+ GIGTVLADDP LTCR+    +       +P+RII D   ++  DS 
Sbjct: 189 YVMELRNRHKGIMAGIGTVLADDPMLTCRIENGIDRDTDNVRNPIRIICDSKLRIPEDSN 248

Query: 236 IIKTALLAPVIIVTEND---DPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVT 288
           I++TA+    I+ T  D   D       R+K+++II  D      DL +L+ IL G+G+ 
Sbjct: 249 IVQTAVEIETIVATTPDGAADTAKCDRLREKSVSIIETDSTDGNVDLGQLMDILGGKGID 308

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRR 343
            +L+EGG  + +S ++  LVD   ++ +  + G  G  SP+    ++       F     
Sbjct: 309 GILLEGGGELNYSMVSEGLVDEACVFIAPKIFGGEGKYSPVSGTGVDVPADAHMFRLEEV 368

Query: 344 DYFGSDVCLEY 354
             F  DV L Y
Sbjct: 369 RRFDEDVMLRY 379


>gi|110598480|ref|ZP_01386751.1| riboflavin biosynthesis protein RibD:Riboflavin-specific
           deaminase-like [Chlorobium ferrooxidans DSM 13031]
 gi|110339930|gb|EAT58434.1| riboflavin biosynthesis protein RibD:Riboflavin-specific
           deaminase-like [Chlorobium ferrooxidans DSM 13031]
          Length = 369

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 126/372 (33%), Positives = 196/372 (52%), Gaps = 17/372 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M +   D  +M+  +  +    G  S NP V  +IV DG++IG G     G PHAEV A+
Sbjct: 2   MSLLCDDTVYMNRCIELALKGGGTVSPNPMVGSVIVCDGVIIGEGFHERYGAPHAEVNAI 61

Query: 61  EEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
               ++   R +T YV LEPCSH+G++PPC+  IIE GI RVVV   DP V V+G+G+  
Sbjct: 62  ASVADQELLRRSTLYVNLEPCSHFGKTPPCSDLIIEKGIPRVVVGCRDPFVSVAGKGIAK 121

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L   GI + + ++E+       A++         ++LK+A + D  I  +   S  ITG 
Sbjct: 122 LLGAGIAVTEGVLEAACVKLNEAFIKSHTTGLPFVSLKLAETLDGKIATSLGASKWITGE 181

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            ++ +VH LRA+ DA++VG  TV  DD ELT R       +P+R++LD    L ++SKI 
Sbjct: 182 AARMEVHRLRARYDAVVVGEATVRCDDAELTVR--HCSGRNPLRVVLDRRLSLPVESKIF 239

Query: 238 KTALLAPVIIVTENDDP--VLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSLL 291
            T   AP I+   +       A   R++ + ++    +    DL+++L  L   G+ S+L
Sbjct: 240 NTE--APTILFASSAWEGLEKAGLLRERGVTVLFVREHAGELDLRQVLEELHKHGILSIL 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR----DYFG 347
           VEGG+ ++ SFI  RLVD I ++ +  + G   + S    G    +   V +     +FG
Sbjct: 298 VEGGSRLSASFIRERLVDKIYMFIAPKLFGGDALSSFAPLGISIPDDAVVLKFETPRFFG 357

Query: 348 SDVCLEYIGKNL 359
           SD+ LE   ++L
Sbjct: 358 SDLLLEAYVQSL 369


>gi|237742612|ref|ZP_04573093.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium sp. 4_1_13]
 gi|229430260|gb|EEO40472.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium sp. 4_1_13]
          Length = 369

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 112/364 (30%), Positives = 194/364 (53%), Gaps = 17/364 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D ++M+ A+  ++  +G  + NP V  +IVKDG +IG G     G PHAEV AL EA E
Sbjct: 5   LDEKYMARAIELAKRGIGGVNPNPLVGAVIVKDGKIIGEGWHKKFGGPHAEVWALNEAEE 64

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            A GAT YVTLEPCSH G++PPCA+ I+E GI+R VV   DP+  V+G+G++ +   GI 
Sbjct: 65  NAEGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVVACIDPNPLVAGKGIKIIENAGIT 124

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   ++E E K     +      +  ++ LK  ++ D  I      S  IT  I++ +V 
Sbjct: 125 VKLGVLEKEAKEINKIFFKYIENRIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKVQ 184

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            LR +  AI+VGI T+L D+P L  RL+    G+++ +P R+++DP+ +  +++K +   
Sbjct: 185 FLRTKFMAIMVGINTILKDNPSLDSRLDEKKFGIEKRNPFRVVIDPNLESPIEAKFLNFN 244

Query: 241 LLAPVIIVTENDDP--VLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGA 296
                II+T ND+        ++      I+ + +  K   +L  L    + S+L+EGG+
Sbjct: 245 -DGKAIIITSNDNKGLEKIEKYKNLGTRFIFLEGKIFKMEDILKELGKLEIDSVLLEGGS 303

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV------RRDYFGSDV 350
            +  +     ++D+  ++ +  +IG+     P   G+   +   V      + + +G ++
Sbjct: 304 GLISTAFKENIIDAGEIFIAPKIIGDSSA-VPFINGFNFDSMEDVFKLSNPKFNIYGDNI 362

Query: 351 CLEY 354
            +E+
Sbjct: 363 SIEF 366


>gi|297584480|ref|YP_003700260.1| riboflavin biosynthesis protein RibD [Bacillus selenitireducens
           MLS10]
 gi|297142937|gb|ADH99694.1| riboflavin biosynthesis protein RibD [Bacillus selenitireducens
           MLS10]
          Length = 361

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 122/359 (33%), Positives = 179/359 (49%), Gaps = 9/359 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  +    G TS NP V C+IVK   + G G     G  HAE QAL  A EE
Sbjct: 3   DDHYMKLAIEIAEATKGQTSPNPQVGCVIVKHNQIKGIGAHLKAGEWHAERQALHMAKEE 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GATAYVTLEPCSH+G++PPC+  +IE GI RVV    DP+  VSGRG++ L   GI V
Sbjct: 63  ANGATAYVTLEPCSHHGKTPPCSDALIEAGISRVVTASSDPNPDVSGRGIRRLRDAGIEV 122

Query: 127 DRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++ E        +     ++  ++TLK A S D  I  A   S  I+   S+  VH 
Sbjct: 123 VEGVQKERADRMNRWFFHAITKQTPYVTLKFATSLDGKIATATGESQWISNEKSRADVHR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +R Q D ILVG  TV+ D+P LT RL      +P+RII+D   +   DS ++        
Sbjct: 183 IRHQVDGILVGRETVVQDNPSLTTRLPAG-GKNPIRIIMDRTLRTPPDSIMLNDGQSPVW 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           I+                   II    +D  ++++L +L  +G+++LLVEGG  +   F+
Sbjct: 242 IVTNAGASQERKEMLIASGAEIIEITDKDRFIEEMLEVLGRQGISTLLVEGGGTINDQFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGK 357
              L   +I Y++ ++IG     S      +++       +  + ++F  DV   Y+ K
Sbjct: 302 TRGLFHEVIHYQAPVIIGGKDAQSSFSGAGVQQLANAPRLLLDQEEWFDDDVKRTYVYK 360


>gi|153940820|ref|YP_001392147.1| riboflavin biosynthesis protein RibD [Clostridium botulinum F str.
           Langeland]
 gi|152936716|gb|ABS42214.1| riboflavin biosynthesis protein RibD [Clostridium botulinum F str.
           Langeland]
 gi|295320152|gb|ADG00530.1| riboflavin biosynthesis protein RibD [Clostridium botulinum F str.
           230613]
          Length = 365

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 118/358 (32%), Positives = 190/358 (53%), Gaps = 15/358 (4%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
            +M  AL+ +    G  + NP V  ++VK+  +IG G   Y G PHAEV AL EAGE+A+
Sbjct: 6   FYMEKALKLAERGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGPHAEVYALREAGEKAK 65

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GAT YVTLEPCSHYG++PPCA+ I++ GI + ++ + DP+  V GRG+  L Q GI +V 
Sbjct: 66  GATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVT 125

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            +ME E K     ++    +K+  + LK A + D  I      S  ITG  ++ +V  +R
Sbjct: 126 GIMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATRTGESKWITGEEARYKVQQIR 185

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
                I+VGI TV+ D+P LT R+ G    SP  II+D + ++ L+SKI++T     + I
Sbjct: 186 NDLSGIMVGIDTVIKDNPLLTTRIEG--GRSPKAIIVDSNLRIPLESKILETFNKRAIYI 243

Query: 248 VTEN--DDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAH 300
                  +P    A       ++  +  +     L +L+  LV  GV S+L+EGG+ +  
Sbjct: 244 AATKKHKNPSKKNALENLGAKVLEFEENEEGKVPLNELMQYLVSEGVDSILLEGGSTLNF 303

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
           S +   +VD ++ + +  ++G     + +    +E          ++ +  G D+ +E
Sbjct: 304 SALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVESLKDIFKLENLKFEKIGQDILIE 361


>gi|149378281|ref|ZP_01895992.1| riboflavin biosynthesis protein RibD [Marinobacter algicola DG893]
 gi|149357446|gb|EDM45957.1| riboflavin biosynthesis protein RibD [Marinobacter algicola DG893]
          Length = 371

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 131/365 (35%), Positives = 187/365 (51%), Gaps = 19/365 (5%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D  FM+ A++ +      T  NP V C+I +   V+G G     G  HAE +AL +AG
Sbjct: 4   AQDTAFMARAVQLAWRGRYSTHPNPRVGCVIARGSKVLGEGWHERAGEAHAETRALSQAG 63

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            +ARGATAYVTLEPCSH+GR+PPCA+ +IE GI  V     DP+  VSGRGL  L + GI
Sbjct: 64  PDARGATAYVTLEPCSHFGRTPPCAKALIEAGIAHVFAATKDPNPSVSGRGLDMLREAGI 123

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            + + ++  E       ++ R    R ++ LK+A S D    MA   S  ITG  S+  V
Sbjct: 124 RVTEGLLAEEAVRLNPGFMKRMNVGRPYVRLKMAASLDGRTAMASGESQWITGSESRRDV 183

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--------HSPMRIILDPHFKLSLDSK 235
             LRA SDA+L G+GTVLAD+P LT R   L +          P+R+I D   +    + 
Sbjct: 184 QRLRAISDAVLTGVGTVLADNPSLTVRRTELGDIGDATEPSRQPLRVIADRDARTPPGAT 243

Query: 236 IIKTA-----LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           I++         +P +      D  LA             +  D+++LL  L   G+  L
Sbjct: 244 ILQGGNVQVYCASPTLATAPAQD--LAALGVGLTGVAWKDNGIDVRELLDSLGELGINEL 301

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFG 347
           LVE G  +A +FI+ RLVD + LY++ + +G  G P+   PLE    +  +  + R   G
Sbjct: 302 LVEAGPTLAGTFISERLVDELWLYQAPVFLGSTGRPTANLPLESMADKVQWKVLDRRQLG 361

Query: 348 SDVCL 352
            D  L
Sbjct: 362 EDQRL 366


>gi|225023912|ref|ZP_03713104.1| hypothetical protein EIKCOROL_00778 [Eikenella corrodens ATCC
           23834]
 gi|224943386|gb|EEG24595.1| hypothetical protein EIKCOROL_00778 [Eikenella corrodens ATCC
           23834]
          Length = 364

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 129/360 (35%), Positives = 189/360 (52%), Gaps = 11/360 (3%)

Query: 1   MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP  S  D   M  A+  +      TS NP V C+I + G ++G+G     G PHAEV A
Sbjct: 1   MPQFSHADHALMQQAIALAWQGRFSTSPNPRVGCVIAQGGQIVGQGFHLKAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           L +AG  A+GATAYVTLEPC+H+GR+PPCA+ +I  G+RRVV  + DP+  V G+GL  L
Sbjct: 61  LRQAGSAAQGATAYVTLEPCAHHGRTPPCAEALIRAGVRRVVAAMQDPNPLVVGKGLAIL 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   +ME E +     +L+R    R  + LK A S D    +A   S  ITG  
Sbjct: 121 EAAGIQVACGLMEREARQLNRGFLSRIERGRPFVKLKTAASLDGKTALANGQSQWITGEA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           +++ V + RA+S A+L GIGTVLAD+P LT R +      P+R++LD   +L   S ++ 
Sbjct: 181 ARHDVQIQRAESCAVLTGIGTVLADNPRLTVR-DFPTLRPPLRVLLDSRLRLPAGSHLLD 239

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
            +  AP +I T +D P  A A     +         L  +L  L  RG+  L++E GA +
Sbjct: 240 GS--APTLIYTLSDRPAPAGAAEICRLEADAQGRLSLNAVLADLAARGIGELMLEAGATL 297

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPL------EEGYLEKNFMCVRRDYFGSDVCL 352
             +F+   LVD I+ Y++  ++G    P+             E ++  V  +  G D+  
Sbjct: 298 GSAFLAQDLVDEIVCYQAPKLLGGAQSPTLFRLPENPAALSREPDWHTVGIEQLGDDIKW 357


>gi|150016108|ref|YP_001308362.1| riboflavin biosynthesis protein RibD [Clostridium beijerinckii
           NCIMB 8052]
 gi|149902573|gb|ABR33406.1| riboflavin biosynthesis protein RibD [Clostridium beijerinckii
           NCIMB 8052]
          Length = 361

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 118/363 (32%), Positives = 187/363 (51%), Gaps = 13/363 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D ++M  AL  ++  +G  + NP V  +IVKD  +IG G     G  HAE  A++ A +
Sbjct: 1   MDEKYMEIALELAKRGIGKVNPNPLVGAVIVKDNEIIGEGYHECYGEAHAERNAVKNATK 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
               +T YVTLEPC+HYG++PPC   IIE   +RVV+ + DP+  VSG+ ++ L Q GI 
Sbjct: 61  SVEESTIYVTLEPCAHYGKTPPCVDLIIEKKFKRVVIGMLDPNELVSGKSVEKLKQHGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V  + E E K     ++     K   + LK  +S D  I      S  IT   S+    
Sbjct: 121 VVVGIKEKECKELNEIFIKYITSKIPFVILKSGMSIDGKIATYSGQSKWITSKESREDSQ 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR +  +I+VG+ TV+ D+PELTCR+N  ++   +RII+D + ++ L+SK++  +  A 
Sbjct: 181 HLRNRFHSIMVGVNTVIEDNPELTCRINDGKKL--IRIIVDSNLRIPLESKVLTNSDKAA 238

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
           +++ T   D       R   I +I    +D    LK+L+  +   G+ S+L+EGG  +  
Sbjct: 239 IVVTTLKSDKEKKKKLRSMGIKVIEVADKDNRVNLKELVKRVGEEGIDSILIEGGGTLNF 298

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLE-Y 354
           S +  R+VD +  Y +  +IG     + +      K    VR +       G D+ LE Y
Sbjct: 299 SALEERIVDKVRFYIAPKIIGGQSSRNSIAGKGFFKLDDAVRLEDINYRTIGEDLVLEGY 358

Query: 355 IGK 357
           + K
Sbjct: 359 VAK 361


>gi|228916001|ref|ZP_04079574.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228843596|gb|EEM88672.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 350

 Score =  353 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 122/341 (35%), Positives = 183/341 (53%), Gaps = 10/341 (2%)

Query: 22  VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
            G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ARG T YVTLEPCSH
Sbjct: 2   KGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARGGTIYVTLEPCSH 61

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140
           +GR+ PCA+ I++ GI++VVV   DP+  VSGRG+Q L   GI ++  + E E K     
Sbjct: 62  HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIQILQDAGIEVLVGVCEEESKKMNEV 121

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +R ++ AILVG  TV
Sbjct: 122 FNKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTV 181

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
             D+P LT R+      +P+RIILD   ++ +++ I+        I  T N       A 
Sbjct: 182 QKDNPSLTTRIP--NGRNPIRIILDSTLRIPMEANIVTDGEAPTWIFTTSNHAGEKKKAL 239

Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
               + +         +L ++L +L  +GV+SLL+EGG  V  SFI + L+D +ILY + 
Sbjct: 240 ENAGVKVFVTSGEKHINLYEMLDVLGEKGVSSLLIEGGGEVNASFIENELMDKLILYFAP 299

Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
            +IG    PS +E   + K    +       D+    +GK+
Sbjct: 300 KIIGGRLAPSFVEGTGITKMQDAIEFK----DISFTPVGKD 336


>gi|321311800|ref|YP_004204087.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Bacillus subtilis BSn5]
 gi|320018074|gb|ADV93060.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Bacillus subtilis BSn5]
          Length = 361

 Score =  353 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 118/355 (33%), Positives = 174/355 (49%), Gaps = 9/355 (2%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            +  +M  AL  ++   G T +NP V  ++VKDG ++G G     G  HAEV A+  AG 
Sbjct: 1   MEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGA 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            A GA  YVTLEPCSHYG++PPCA+ II  GI+RV V + DP+  V+GRG+  + + GI 
Sbjct: 61  HAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMIKEAGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           + + ++  + +     +L        ++TLK A S D  I  +   S  IT   ++    
Sbjct: 121 VREGILADQAERLNEKFLHFMRTGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQ 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             R    +ILVG+GTV AD+P LTCRL  +    P+R+ILD    +  D+K+I   +   
Sbjct: 181 QYRKTHQSILVGVGTVKADNPSLTCRLPNVT-KQPVRVILDTVLSIPEDAKVICDQIAPT 239

Query: 245 VIIVTENDDPVLALAFRKKNINI--IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            I  T   D           +NI  +  +   +  +L IL   G+ S+ VEGG+AV  SF
Sbjct: 240 WIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVHGSF 299

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCL 352
           +       II Y +  +IG    PS +     +                G D+ L
Sbjct: 300 VKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKL 354


>gi|300865185|ref|ZP_07110005.1| riboflavin biosynthesis protein [Oscillatoria sp. PCC 6506]
 gi|300336816|emb|CBN55155.1| riboflavin biosynthesis protein [Oscillatoria sp. PCC 6506]
          Length = 388

 Score =  353 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 119/362 (32%), Positives = 186/362 (51%), Gaps = 8/362 (2%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P   FDA  M   +  +R  +G T+ NP V   IV+DG+V+G G     G PHAEV AL 
Sbjct: 26  PRQDFDAAMMRRCIELARCALGKTAPNPLVGSAIVRDGLVVGEGFHPGAGMPHAEVFALR 85

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           EAGE+A GAT YV LEPC+HYGR+PPC++ +I  G+ +VVV + DP+  VSG G+  L +
Sbjct: 86  EAGEKALGATVYVNLEPCNHYGRTPPCSEALIAAGVAKVVVGMVDPNPLVSGGGIARLRE 145

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +V  + E   +    A++ R + +R    LK A++ D  I  +   S  +TG  ++
Sbjct: 146 AGIEVVVGVEEEACRKLNEAFIHRILYRRPFGILKYAMTLDGKIATSSGHSAWVTGEEAR 205

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
           +QVH LR   DA++VG  TV  D+P+LT    G   H+P+R+++     L   S++ +T 
Sbjct: 206 SQVHGLRIACDAVIVGGNTVRLDNPQLTSHQEG--RHNPLRVVMSRTLDLPKSSRLWETG 263

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
             + +++  E  +P        + + ++          +  L  R   S+L E G  +A 
Sbjct: 264 DASTLVLTQEGTNPEFREFLGSRGVEVVDLSPLTPASAMAYLYDRSFLSVLWECGGILAA 323

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYI 355
           S I    V  I+ + +  ++G  G PSP+ +    +         V     G+D  +E  
Sbjct: 324 SAIADGSVQKILAFIAPKIVGGQGSPSPVGDLGFARMTEAIALERVSWHSVGADCLVEGY 383

Query: 356 GK 357
            K
Sbjct: 384 LK 385


>gi|292669813|ref|ZP_06603239.1| riboflavin biosynthesis protein RibD [Selenomonas noxia ATCC 43541]
 gi|292648610|gb|EFF66582.1| riboflavin biosynthesis protein RibD [Selenomonas noxia ATCC 43541]
          Length = 370

 Score =  353 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 135/362 (37%), Positives = 193/362 (53%), Gaps = 7/362 (1%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D  +M  ALR + +  G TS NP V  LIV+DG+V+  G     G PHAE+ AL  AG
Sbjct: 6   ALDESYMREALRLAEFARGRTSPNPLVGALIVRDGVVVANGWHRAAGEPHAEIHALRMAG 65

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           + ARGA  YVTLEPC+H+GR+ PCA+ +I  G+ RVVV + DP+  V+GRG+  L   GI
Sbjct: 66  DLARGAALYVTLEPCAHHGRTGPCAEAVIAAGVARVVVALCDPNPLVAGRGIAMLEAAGI 125

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +V  ++E E +     +L     KR  +TLK A++ D  I      S  ITG  ++ +V
Sbjct: 126 EVVTGVLEDEARRQNETFLKWITTKRPFVTLKTAMTLDGKIASRTGASAWITGESARMRV 185

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  R   DAIL+GIGT+LADDP LT RL     H P+RI+LD   +  + +K++      
Sbjct: 186 HEYRDAYDAILIGIGTLLADDPSLTARLPDRPGHHPLRIVLDSEARTPISAKLVTDGAAP 245

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            VI V+E  DP      R     ++    +  D+  LL  L  R  TSL VEGGA    S
Sbjct: 246 TVIAVSERADPKRMNLLRACGAEVVTLGAERVDIGCLLDWLGERECTSLFVEGGAEANWS 305

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           F+     D +  + + +++G    P+P+     +     +R      DV +E IG +L +
Sbjct: 306 FLAGGHADKVHAFIAPMLMGGAAAPTPVGGAGFDSPQTALRL----GDVTVEQIGMDLLV 361

Query: 362 QE 363
             
Sbjct: 362 TG 363


>gi|291484757|dbj|BAI85832.1| riboflavin-specific deaminase [Bacillus subtilis subsp. natto
           BEST195]
          Length = 361

 Score =  353 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 118/355 (33%), Positives = 174/355 (49%), Gaps = 9/355 (2%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            +  +M  AL  ++   G T +NP V  ++VKDG ++G G     G  HAEV A+  AG 
Sbjct: 1   MEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGA 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            A GA  YVTLEPCSHYG++PPCA+ II  GI+RV V + DP+  V+GRG+  + + GI 
Sbjct: 61  HAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMIKEAGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           + + ++  + +     +L        ++TLK A S D  I  +   S  IT   ++    
Sbjct: 121 VREGILADQAESLNEKFLHFMRTGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQ 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             R    +ILVG+GTV AD+P LTCRL  +    P+R+ILD    +  D+K+I   +   
Sbjct: 181 QYRKTHQSILVGVGTVKADNPSLTCRLPNVT-KQPVRVILDTVLSIPEDAKVICDQIAPT 239

Query: 245 VIIVTENDDPVLALAFRKKNINI--IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            I  T   D           +NI  +  +   +  +L IL   G+ S+ VEGG+AV  SF
Sbjct: 240 WIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVHGSF 299

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCL 352
           +       II Y +  +IG    PS +     +                G D+ L
Sbjct: 300 VKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKL 354


>gi|226950300|ref|YP_002805391.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A2 str.
           Kyoto]
 gi|226842626|gb|ACO85292.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A2 str.
           Kyoto]
          Length = 365

 Score =  353 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 117/358 (32%), Positives = 189/358 (52%), Gaps = 15/358 (4%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
            +M  AL+ +    G  + NP V  ++VK+  +IG G   Y G  HAEV AL EAGE+A+
Sbjct: 6   FYMEKALKLAERGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGSHAEVYALREAGEKAK 65

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GAT YVTLEPCSHYG++PPCA+ I++ GI + ++ + DP+  V GRG+  L Q GI +V 
Sbjct: 66  GATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVT 125

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            +ME E K     ++    +K+  + LK A + D  I      S  ITG  ++ +V  +R
Sbjct: 126 GIMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATRTGESKWITGEDARYKVQQIR 185

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
                I+VGIGT++ D+P LT R+ G    SP  II+D + ++ L+SKI++T     + I
Sbjct: 186 NDLSGIMVGIGTIIKDNPLLTTRIEG--GRSPRAIIVDSNLRIPLESKILETLNKRAIYI 243

Query: 248 VTENDDP--VLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAH 300
            T           A       ++  +  +     L +L+  L   GV S+L+EGG+ +  
Sbjct: 244 ATTKKHNNFSKKNALENLGAKVLEFEENEEGKVPLNELMQYLGSEGVDSILLEGGSTLNF 303

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
           S +   +VD ++ + +  ++G     + +    +E      N   ++ +  G D+ +E
Sbjct: 304 SALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVESLKDIFNLQNLKFEKIGQDILIE 361


>gi|304407004|ref|ZP_07388658.1| riboflavin biosynthesis protein RibD [Paenibacillus curdlanolyticus
           YK9]
 gi|304343991|gb|EFM09831.1| riboflavin biosynthesis protein RibD [Paenibacillus curdlanolyticus
           YK9]
          Length = 373

 Score =  353 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 129/369 (34%), Positives = 195/369 (52%), Gaps = 12/369 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M     DA +M  AL+ ++   G TS NP V C+IVK+G +IG G     G  HAEV AL
Sbjct: 1   MSEVLNDAFYMRLALQMAQGATGQTSINPVVGCVIVKEGRIIGMGAHLKRGEGHAEVNAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
             AG+EA GATAYVTLEPCSHY  ++PPC   +IE  I RVVV   DP+ +V+G G++ L
Sbjct: 61  RMAGDEAEGATAYVTLEPCSHYRKKTPPCCDRLIEARIARVVVAAQDPNPQVAGTGVEKL 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++  E       Y    + +   +TLK A + D  I      S  ITG  
Sbjct: 121 RAAGIAVSVGLLAEESHAMNERYNKYILSRLPFVTLKTASTLDGRIAAKTGDSRWITGPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           S+  VH +R Q D I+VGIGT+LADDP+LT RL     H P RII+D   ++ LD++++ 
Sbjct: 181 SREAVHTMRHQHDGIMVGIGTLLADDPQLTTRLEVPALH-PARIIVDSALRIPLDARVVT 239

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGG 295
             +   +++ T   +P    + +   + I+ C      +L + + +L    + S+L+EGG
Sbjct: 240 DGMARTIVLTTTAANPEKRSSLQAAGVEIVDCGDGPHVNLTEAMRLLGDMEIGSILLEGG 299

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGI--PSPLEEGYLEK----NFMCVRRDYFGSD 349
             +  + + + LVD I L+ +  +IG G     + + EG+ +          R + +G D
Sbjct: 300 GQLNGAMLAAGLVDKISLFFAPKLIGGGEASPAAFVFEGFEKMADAITLESTRYEQYGDD 359

Query: 350 VCLEYIGKN 358
           + +     N
Sbjct: 360 IAVIGYPSN 368


>gi|255067329|ref|ZP_05319184.1| riboflavin biosynthesis protein RibD [Neisseria sicca ATCC 29256]
 gi|255048480|gb|EET43944.1| riboflavin biosynthesis protein RibD [Neisseria sicca ATCC 29256]
          Length = 365

 Score =  353 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 140/363 (38%), Positives = 189/363 (52%), Gaps = 13/363 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D + M  AL  +R     TS NP V C+I     ++G+G     G PHAEV AL +AGE
Sbjct: 5   IDTQMMQNALALARLGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQAGE 64

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            ARGATAYVTLEPCSHYGR+PPCA+ +I  G+ RVV  + DP+  V+G+GL  L   GI 
Sbjct: 65  MARGATAYVTLEPCSHYGRTPPCAEALIGSGVSRVVAAMTDPNPLVAGKGLAMLEAAGIR 124

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
            +  ++E+E +     +L+R    R  + +K A S D    +A   S  ITG  ++  V 
Sbjct: 125 TESGLLETEARELNRGFLSRIERGRPFVRIKCAASLDGKTALADGRSYWITGEAARADVQ 184

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LRA+S A+L GIGTVLAD+P L  R        P RI+LD   +  L S II    L+P
Sbjct: 185 TLRAESCAVLTGIGTVLADNPCLNVR-AFPTLRQPARIVLDSKLQTPLGSHIISDD-LSP 242

Query: 245 VIIVTENDDPVLALAFRK-KNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAV 298
            IIVT  DD      +    +I I+          DL  LL  L   G   ++VE GA +
Sbjct: 243 TIIVTAVDDEERLKPYHAFSHIRILRSSENANGRIDLAALLPQLAELGYGEIMVEAGATL 302

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           A +FI S L D I+LY++  ++GEG     +P+       E  +     +  G DV    
Sbjct: 303 ASAFIESGLADEIVLYQAPKILGEGRNLLTLPANPAVLTSEGEWESRSVELIGQDVKWVL 362

Query: 355 IGK 357
             K
Sbjct: 363 RKK 365


>gi|310657724|ref|YP_003935445.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Clostridium sticklandii DSM 519]
 gi|308824502|emb|CBH20540.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Clostridium sticklandii]
          Length = 382

 Score =  353 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 119/366 (32%), Positives = 175/366 (47%), Gaps = 11/366 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   D +FM  AL  +    G  + NP V  +IVKDG VIG G     G  HAE++A+  
Sbjct: 17  MLESDEKFMKLALSLAEKGRGYVNPNPLVGAVIVKDGKVIGEGYHTAFGKSHAEIEAINS 76

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A E+ + AT YVTLEPC H G++PPC + II+  + RVVV   DP+  VSG G++ L Q 
Sbjct: 77  ATEDIKSATMYVTLEPCCHQGKTPPCTEAIIKNQLARVVVATTDPNPLVSGSGIEKLKQS 136

Query: 123 GIIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
            I +   +  E  KI    ++           LK A+S D  I      S  IT   S+ 
Sbjct: 137 NIEITVGVLEEMAKIQNEVFIHYMTTNLPFTILKYAMSLDGKIACHTGDSKWITSEKSRT 196

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH LR+   A++ GIGT+L+DD  L  RL   +   P RI++D   ++SLD+KII    
Sbjct: 197 DVHRLRSSVSAVVTGIGTILSDDASLNVRLIDSKGREPHRIVVDSAARISLDAKIINLDS 256

Query: 242 LAPVII-VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
            +   I VTE                II    +    DL++L   L   G+ S+L+E G 
Sbjct: 257 KSDTYIAVTEAASDGKLRKLEDYGAKIIMTKSKDGKVDLEELWKELGFLGMDSILIEAGE 316

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVC 351
            ++ + + ++LV+ I  Y +  +IG     SP+            N   +   +  +D  
Sbjct: 317 QLSAALLEAKLVNKIRAYIAPKIIGGTNAKSPIGGYGASSMSEVINLKSMNFTHIENDFV 376

Query: 352 LEYIGK 357
           +E   K
Sbjct: 377 VEGYIK 382


>gi|296453532|ref|YP_003660675.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296182963|gb|ADG99844.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 366

 Score =  353 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 119/368 (32%), Positives = 182/368 (49%), Gaps = 13/368 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            DAR+M  A+  ++   G  + NP V  +IVKD  +IG+G     G  HAE  AL    +
Sbjct: 2   DDARYMGLAIELAKRGAGYVNPNPMVGAVIVKDDRIIGQGYHEMFGGLHAERNALRHCTQ 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
              GAT YVTLEPC HYG++PPC + I+E GI RVVV   D +  VSG+G++ L   GI 
Sbjct: 62  SPAGATLYVTLEPCCHYGKTPPCTEAIVESGIARVVVGTLDCNPVVSGKGVRMLEDHGIR 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   ++  E +  +  +         ++ +K A++ D  I      S  I+G  S+ +VH
Sbjct: 122 VDVGVLADECRHLIRVFSKYITTHTPYVIMKYAMTMDGKIATHTNQSRWISGEESRRRVH 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR    A++VG+ TV+ DDP LTCR+      +P+R++ D   +  L S+I++TA    
Sbjct: 182 QLRRSVAAVMVGVNTVIEDDPLLTCRMAH--GRNPVRVVCDTRLRTPLTSRIVQTANDVR 239

Query: 245 VIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
             I T  DD   A  +R+    I+      D  DL  ++  L    + S+L+EGG+A+  
Sbjct: 240 TYIATACDDERKAEDYRRHGCEILAVGRKGDHVDLADVVRRLGDMQMDSVLLEGGSAMNW 299

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYI 355
           S +  R+VD   +Y +  + G G   SP+    +      V          G D  +E  
Sbjct: 300 SALEQRIVDEAHVYIAPKIFG-GTAKSPVGGQGVALPSDAVMLRPRACSRVGEDYLVESE 358

Query: 356 GKNLCLQE 363
               C +E
Sbjct: 359 VVYSCSRE 366


>gi|213691299|ref|YP_002321885.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213522760|gb|ACJ51507.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457366|dbj|BAJ67987.1| riboflavin biosynthesis protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 366

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 118/368 (32%), Positives = 182/368 (49%), Gaps = 13/368 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            DA++M  A+  ++   G  + NP V  +IVKD  +IG+G     G  HAE  AL    +
Sbjct: 2   DDAQYMGLAIELAKRGAGYVNPNPMVGAVIVKDDRIIGQGYHEMFGGLHAERNALRHCTQ 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
              GAT YVTLEPC HYG++PPC + I+E GI RVVV   D +  VSG+G++ L   GI 
Sbjct: 62  SPAGATLYVTLEPCCHYGKTPPCTEAIVESGIARVVVGTLDCNPVVSGKGVRMLEDHGIR 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   ++  E +  +  +         ++ +K A++ D  I      S  I+G  S+ +VH
Sbjct: 122 VDVGVLADECRHLIRVFSKYITTHTPYVIMKYAMTMDGKIATHTNQSRWISGEESRRRVH 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR    A++VG+ TV+ DDP LTCR+      +P+R++ D   +  L S+I++TA    
Sbjct: 182 QLRRSVAAVMVGVNTVIEDDPLLTCRMAH--GRNPVRVVCDTRLRTPLTSRIVQTANDVR 239

Query: 245 VIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
             I T  DD   A  +R+    I+      D  DL  ++  L    + S+L+EGG+A+  
Sbjct: 240 TYIATACDDERKAEDYRRHGCEILAVGRKGDHVDLADVVRRLGDMQMDSVLLEGGSAMNW 299

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYI 355
           S +  R+VD   +Y +  + G G   SP+    +      V          G D  +E  
Sbjct: 300 SALEQRIVDEAHVYIAPKIFG-GTAKSPVGGQGVALPSDAVMLRPRACSRVGEDYLVESE 358

Query: 356 GKNLCLQE 363
               C +E
Sbjct: 359 VVYSCSRE 366


>gi|157960990|ref|YP_001501024.1| riboflavin biosynthesis protein RibD [Shewanella pealeana ATCC
           700345]
 gi|157845990|gb|ABV86489.1| riboflavin biosynthesis protein RibD [Shewanella pealeana ATCC
           700345]
          Length = 373

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 130/375 (34%), Positives = 193/375 (51%), Gaps = 22/375 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D++ MS A+  ++  +  T  NPSV  +IVKDG ++G G     G PHAEV AL  
Sbjct: 2   WSIEDSQMMSLAIELAQKGMYTTRPNPSVGSVIVKDGEIVGEGYHIRAGGPHAEVYALNM 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG +A+GATAYVTLEPCSHYGR+PPCA+ +IE G+ RVV+ V DP+  VSGRG+  L   
Sbjct: 62  AGSDAKGATAYVTLEPCSHYGRTPPCAKALIEHGVSRVVIAVTDPNPEVSGRGIAMLRDA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   +M  E K     +L R  +    +T+K+A S D    ++   S  ITG  ++ 
Sbjct: 122 GIRVDVGLMTEEAKQVNLGFLKRMEKGLPWVTVKLAASLDGKTALSNGVSKWITGPEARR 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR----------LNGLQEHSPMRIILDPHFKLS 231
            V  LRA+  A++ G+ T+LADDP L  R          L   + H P+R++LD   +L 
Sbjct: 182 DVQRLRARHCALVTGVETILADDPSLNVRHSELGSLASQLAPAEIHQPLRVVLDSQARLG 241

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGV 287
            +  + K  + +P+++V+    P    A    ++            DL  LL++L     
Sbjct: 242 HELNLFK--IDSPILLVSTQAYPESVQAAWPPHVQSQVLAAVDSRIDLNALLSLLGE-SC 298

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRR 343
            S+LVE GA +A +F+N  L D I+LY++  ++G  G      + +           +  
Sbjct: 299 NSVLVEAGATLAGAFVNQGLADEIVLYQAMKILGSQGRNLLTLDDFQAMSEVPKINLIDE 358

Query: 344 DYFGSDVCLEYIGKN 358
              G D  L     N
Sbjct: 359 RKVGPDTRLTLRVSN 373


>gi|311068845|ref|YP_003973768.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Bacillus atrophaeus 1942]
 gi|310869362|gb|ADP32837.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Bacillus atrophaeus 1942]
          Length = 363

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 114/360 (31%), Positives = 173/360 (48%), Gaps = 9/360 (2%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            +  +M+ AL  ++   G T +NP V  ++VK+G ++G G     G  HAEV A++ AG+
Sbjct: 1   MEEYYMNTALELAKQGEGQTGSNPLVGAVVVKNGEIVGMGAHLKYGEAHAEVHAIKMAGK 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
             + A  YVTLEPCSHYG++PPCA+ II  GI+RV V + DP+  V+G+G+  +   GI 
Sbjct: 61  HVKDADIYVTLEPCSHYGKTPPCAELIITSGIKRVFVAMRDPNPLVAGKGISMIKAAGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           + + ++  + +     +L        ++TLK A S D     +   S  IT   ++    
Sbjct: 121 VKEGILTDQAEKLNEKFLHYMRTGLPYVTLKAAASLDGKTATSTGDSKWITSEAARQDAQ 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             R    +ILVG+GTV AD+P LTCRL       P+R+ILD    +  ++K+I       
Sbjct: 181 QYRKTHQSILVGVGTVKADNPSLTCRLPN-TVKQPVRVILDTSLTIPEEAKVILDQAAPT 239

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            I  T   D           + I   +     +  +L IL   G+ S+ VEGGAAV  SF
Sbjct: 240 WIFTTSQADAEKKKRLSDFGVKIFTLENGHIHIPDVLKILAEEGIMSVYVEGGAAVHGSF 299

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
           +       II Y +  +IG    PS +     +              + G D+ LE   K
Sbjct: 300 VKEGCYQEIIFYIAPKLIGGTHAPSLISGEGFQSMKDVPLLQFTAITHIGQDIKLEAKPK 359


>gi|238918989|ref|YP_002932503.1| riboflavin biosynthesis protein RibD, [Edwardsiella ictaluri
           93-146]
 gi|238868557|gb|ACR68268.1| riboflavin biosynthesis protein RibD, putative [Edwardsiella
           ictaluri 93-146]
          Length = 373

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 121/371 (32%), Positives = 181/371 (48%), Gaps = 18/371 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M     D  +M+ A   +R     T+ NP+V C++V+D  ++G G     G PHAEV AL
Sbjct: 3   MSAVHSDEFYMARAFELARRGRFTTTPNPNVGCVLVRDDRIVGEGFHLRAGEPHAEVLAL 62

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE+ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L 
Sbjct: 63  RMAGEQARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPHVAGRGLYRLQ 122

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           Q GI +   +M +E +     +L R      ++ LK+  S D    MA   S  IT   +
Sbjct: 123 QAGIAVQHGLMLAEAEAINKGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSAAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228
           +  V   RAQS AIL    TVLADDP LT R + L E             P+R+I+D H 
Sbjct: 183 RADVQRYRAQSSAILSSSATVLADDPALTVRWDSLDEDTQRLYPREHLRQPLRVIVDSHN 242

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           +++    ++  A     ++   + D         +     + +  DL  L+  L    + 
Sbjct: 243 RVTPQHGLV--AQPGETLLARIDPDTQDWPPSVSQLAVPRHGEGLDLVLLMMQLGKMQLN 300

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344
           S+ VE G  +A + + + LVD +I+Y + +++G+          LE              
Sbjct: 301 SVWVEAGPRLAGALLQAGLVDELIVYLAPMLLGDAARGLCHLPGLERLGDAPALTFSDVT 360

Query: 345 YFGSDVCLEYI 355
             G+D+ L   
Sbjct: 361 RVGNDLRLTLR 371


>gi|218463058|ref|ZP_03503149.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
           [Rhizobium etli Kim 5]
          Length = 412

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 185/410 (45%), Positives = 236/410 (57%), Gaps = 54/410 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M ++  D  FM+AA+R SR H+G T+TNPSV CLIVKDG+V+G+ VTA GG PHAE QAL
Sbjct: 1   MSITPHDESFMAAAIRLSRRHLGRTATNPSVGCLIVKDGVVVGQAVTALGGRPHAEPQAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAGE ARG T YVTLEPCSH+G++PPCA+ +I  G+ RVV+ V DPD RVSGRG+  L 
Sbjct: 61  AEAGEAARGGTVYVTLEPCSHHGKTPPCAEALIAYGVARVVISVTDPDPRVSGRGISMLR 120

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI VD  ++E+EG+  L  YLTRQ + R ++TLK+AVS D MIG AG G V ITG  +
Sbjct: 121 DAGIEVDAGVLEAEGRRSLAGYLTRQTKSRPYVTLKLAVSADGMIGRAGEGQVAITGPEA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           + +V  LRA++D IL GIGT ++DDP LT R  GL+  SP+RI+LDP   L L SK++ T
Sbjct: 181 RAEVQALRAETDTILGGIGTAISDDPLLTVRTPGLEAQSPIRIVLDPSLALPLTSKLVAT 240

Query: 240 ALLAPVIIVTEN------------------------------------------------ 251
           A   PVI+V                                                   
Sbjct: 241 ARDVPVILVASEQVWPLSADAEGLPPSVLADYRGRATGLDPSFEPPTRGEMTGRAEGGTA 300

Query: 252 -----DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
                D      A     + I+YC+    + LL  L  RG++SLLVEGGA  A  F+ + 
Sbjct: 301 PADATDLDSRRAALEAAGVEIVYCNPYHPEILLPALATRGISSLLVEGGAKTARLFLEAG 360

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
           LVD I LY++ +VIGEGGI SPL    +   F  +    FG D   EY  
Sbjct: 361 LVDRIQLYQAPVVIGEGGIESPLARTDIPSGFAHMGTQIFGQDRLDEYER 410


>gi|304312168|ref|YP_003811766.1| Riboflavin biosynthesis bifunctional RIBD:
           diaminohydroxyphosphoribosylaminopyrimid ine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           oxidoreductase protein [gamma proteobacterium HdN1]
 gi|301797901|emb|CBL46123.1| Riboflavin biosynthesis bifunctional RIBD:
           diaminohydroxyphosphoribosylaminopyrimid ine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           oxidoreductase protein [gamma proteobacterium HdN1]
          Length = 389

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 129/384 (33%), Positives = 194/384 (50%), Gaps = 27/384 (7%)

Query: 1   MP---VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEV 57
           MP    ++FD + MS AL+ +   +  T  NP V C+IV++G ++G G     G  HAEV
Sbjct: 1   MPSYDFNAFDHQMMSRALQLAPRGLYTTHPNPRVGCVIVQNGAIVGEGWHQLAGQGHAEV 60

Query: 58  QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            ALE+AGE A+GATAYVTLEPC+HYGR+PPCA  +I+ GI RVV  + DP+ RVSG G  
Sbjct: 61  LALEQAGERAKGATAYVTLEPCAHYGRTPPCANALIKAGIARVVGAMSDPNPRVSGGGYG 120

Query: 118 WLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
            L   GI  D  +++ + +     ++ R       + +K  +SQD    MA   S  IT 
Sbjct: 121 LLRAAGIKTDNGLLKQQAEALNPGFIKRMRGGLPWVRVKSGISQDARTAMACGESQWITS 180

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-------------SPMRII 223
             ++  V  LRA+S+A++ G+ TVL+DDP LT R                     P+R+I
Sbjct: 181 SPARADVQRLRARSEAVITGVDTVLSDDPALTVRPASWPADDAPWGWPDGFTPIQPLRVI 240

Query: 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLL 279
           LD   +    +++++       +      +P    A R      I    R    DL  +L
Sbjct: 241 LDSQLRTPTSARLLREPGQN--VFAHIGSNPEREEALRACGATCISFPGRDGRVDLVPVL 298

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY----LE 335
             L  + V  +L+E GA+VA SFI + LVD  ++Y++  ++G    P+ + EG      +
Sbjct: 299 QWLAAQEVNEVLIEAGASVAGSFIEAGLVDEWVVYQAPCLLGSEARPALILEGLSGMKDK 358

Query: 336 KNFMCVRRDYFGSDVCLEYIGKNL 359
           +    V     G D    Y  ++L
Sbjct: 359 RTLDLVDSRQIGLDHRFTYRLRSL 382


>gi|251790670|ref|YP_003005391.1| riboflavin biosynthesis protein RibD [Dickeya zeae Ech1591]
 gi|247539291|gb|ACT07912.1| riboflavin biosynthesis protein RibD [Dickeya zeae Ech1591]
          Length = 370

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 119/367 (32%), Positives = 180/367 (49%), Gaps = 18/367 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL  +R     T+ NP+V C+IV+DG ++G G     G PHAEV AL  AG++
Sbjct: 6   DEFYMARALELARRGRFTTAPNPNVGCVIVRDGEIVGEGYHQKAGEPHAEVHALRMAGDK 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+ +V+GRGL  L Q GI +
Sbjct: 66  AHGATAYVTLEPCSHHGRTPPCADALVAAGVARVVAAMQDPNPQVAGRGLHRLQQAGIAV 125

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++  + +     +L R      ++ LK+  S D    MA   S  IT   S+  V  
Sbjct: 126 HHGVLMEQAEKINRGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQSRQDVQR 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
            RAQS AIL    TVLADDP LT R + L E             P+R+I+D   +++   
Sbjct: 186 FRAQSSAILSSSATVLADDPSLTVRWSELDEDTQRLYPESAMRQPVRVIVDSQSRVTPQH 245

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
            ++         +     D        ++    ++    DL  L+  L  R + ++ VE 
Sbjct: 246 CLVNQPGQ--TWLARARQDDQSWPDGVEQLEMPLHGGGIDLVGLMMTLGKRQINTVWVEA 303

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           G  +A + + + +VD +I+Y +  ++G+          LE+      F        G DV
Sbjct: 304 GPRLAGALLQAGVVDELIVYLAPKLLGDAARSLCVLPGLEQLSQAPMFDMTDVCQIGPDV 363

Query: 351 CLEYIGK 357
            L    +
Sbjct: 364 RLTLKPR 370


>gi|168210245|ref|ZP_02635870.1| riboflavin biosynthesis protein RibD [Clostridium perfringens B
           str. ATCC 3626]
 gi|170711633|gb|EDT23815.1| riboflavin biosynthesis protein RibD [Clostridium perfringens B
           str. ATCC 3626]
          Length = 365

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 119/361 (32%), Positives = 186/361 (51%), Gaps = 13/361 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  FM  AL  +R   G  + NP V  +IVK G +IG+G   + G  HAE+ ++  + +
Sbjct: 1   MDEFFMKKALELARKGEGYVNPNPLVGAVIVKGGEIIGQGYHEFFGGNHAEINSINSSIK 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
              GAT YVTLEPC HYG++PPC + II+  ++RVVV   DP+  VSG+ ++ L + GI 
Sbjct: 61  STEGATIYVTLEPCCHYGKTPPCVEAIIKNKLKRVVVGTLDPNPLVSGKSIKILRESGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   ++E E       +     E R  I LK A++ D  I      S  IT   S+  VH
Sbjct: 121 VKVGVLEKECIRLNEIFNFYIKENRPFIALKWAMTLDGKIATKEFKSKWITNRKSREFVH 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALL 242
            LR +  +I+VGI TVL D+P+L CRLN  +  E    RI+LD   ++ LDS+I+K    
Sbjct: 181 SLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKNQSE 240

Query: 243 APVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
           +  +I T N  D +     + K I +I  +      ++ ++L  L  + + S+L+EGG  
Sbjct: 241 SKTLIFTTNKKDKIKNEKLKDKGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEGGGN 300

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352
           +  +F+ ++ V+ I  + +  V G     +P+E   +        F  V    F  D+ +
Sbjct: 301 LNFTFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGIRNVLDAFEFPEVNLKNFDKDILI 360

Query: 353 E 353
           E
Sbjct: 361 E 361


>gi|255655719|ref|ZP_05401128.1| riboflavin biosynthesis protein [Clostridium difficile QCD-23m63]
 gi|296451726|ref|ZP_06893457.1| riboflavin biosynthesis protein RibD [Clostridium difficile NAP08]
 gi|296878970|ref|ZP_06902968.1| riboflavin biosynthesis protein RibD [Clostridium difficile NAP07]
 gi|296259427|gb|EFH06291.1| riboflavin biosynthesis protein RibD [Clostridium difficile NAP08]
 gi|296429997|gb|EFH15846.1| riboflavin biosynthesis protein RibD [Clostridium difficile NAP07]
          Length = 370

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 115/362 (31%), Positives = 174/362 (48%), Gaps = 11/362 (3%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
                D  +M  A+  ++   G  + NP V C+IVKD  +IG+G     G  HAEV A+ 
Sbjct: 5   NQKEKDIYYMKKAIELAKNGEGFVNPNPLVGCVIVKDDYIIGKGYHEKFGSNHAEVNAIN 64

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            A +  + +T YV LEPCSHYG++PPC   II+  I+RVV+   DP+  V G G++ L  
Sbjct: 65  SAKQSLKDSTLYVNLEPCSHYGKTPPCVDKIIQNKIKRVVISTLDPNPLVCGNGVKKLRD 124

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
             I +    +E E +     +      KR    +K AVS D  I      S  I+   S+
Sbjct: 125 NNIDVTVGTLEEEARDLNEVFFYYIKNKRPLCIVKSAVSLDGKIATKSLESKWISNESSR 184

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              H  R +  +I+VGI TVL D+P LTCRLN  +   P RI++D H KL L+S ++K  
Sbjct: 185 YLTHKYRNKYQSIMVGINTVLNDNPLLTCRLNQEKVSHPTRIVIDTHLKLPLNSNLVKD- 243

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
             +  I+ T   +       ++ N+  I    +    DL+ ++  L    + S+LVEGGA
Sbjct: 244 KTSKTIVFTCCKESKKLSMLKENNVETIISPSKNNLVDLEFVMYKLGELNIDSVLVEGGA 303

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVC 351
            +  S   +RLVD + L+ S  +IG    P+ +    +                   D+ 
Sbjct: 304 TLNDSLFRNRLVDKVKLFLSPKIIGGKDAPTFVSGEGINHLSDSTQLAINNVTLIDGDIL 363

Query: 352 LE 353
           +E
Sbjct: 364 IE 365


>gi|87121732|ref|ZP_01077619.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
           C-terminal [Marinomonas sp. MED121]
 gi|86162983|gb|EAQ64261.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
           C-terminal [Marinomonas sp. MED121]
          Length = 383

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 120/361 (33%), Positives = 185/361 (51%), Gaps = 16/361 (4%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M+ A++ +R  +  T  NP V C++V+D  ++  G     G  HAEV A+  A  + 
Sbjct: 10  EYWMAQAIQLARKGLYTTHPNPRVGCVLVRDNSLVAEGYHKVAGEGHAEVNAIANANGDT 69

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           +G TAYVTLEPCSH G++ PCA+ +I+  + R+V  + DP+  V+GRGL  L + GI V 
Sbjct: 70  QGCTAYVTLEPCSHQGKTGPCAKALIKANVSRLVYGMQDPNPDVAGRGLAMLKEAGIEVI 129

Query: 128 R-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +ME+E       ++ R  E   ++ LK+A+S D    M    S  ITG  ++  V  L
Sbjct: 130 GPVMETEALALNPGFIKRMTEGLPYVRLKLAMSLDGRTAMESGESQWITGPDARLDVQKL 189

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQE-------HSPMRIILDPHFKLSLDSKIIKT 239
           RAQSDAI+ GIG+V+ADDP +T R++             P RII+D    +  +SKI+  
Sbjct: 190 RAQSDAIVTGIGSVMADDPSMTVRIDSDNHPVKSKSVRQPKRIIMDTALSIPPESKILYP 249

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEG 294
                +  + E  +     A   K +N+ Y         DL   +  L  +G+  +LVE 
Sbjct: 250 CNQVQIFCLEELAEAEHHKALTDKGVNVTYTQAAEEGGIDLVVSMETLADQGINEVLVET 309

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351
           GA +A +F+   LVD ++LY +  ++G    P    PL+      +F  V     G D+ 
Sbjct: 310 GAVLAGAFLQEGLVDEVVLYMAPKLLGSNARPLMQLPLDSMAQAVDFEMVNLSQLGKDIK 369

Query: 352 L 352
           L
Sbjct: 370 L 370


>gi|261876153|ref|YP_695000.2| riboflavin biosynthesis protein RibD [Clostridium perfringens ATCC
           13124]
 gi|255529887|gb|ABG83871.2| riboflavin biosynthesis protein RibD [Clostridium perfringens ATCC
           13124]
          Length = 371

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 118/362 (32%), Positives = 184/362 (50%), Gaps = 13/362 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D  FM  AL  +R   G  + NP V  +IVK G +IG+G   + G  HAE+ A+  + 
Sbjct: 6   NLDEFFMKKALELARKGEGYVNPNPLVGAVIVKGGEIIGQGYHEFFGGNHAEINAINSSI 65

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +   GAT YVTLEPC HYG++PPC + II+   +RVVV   D +  VSG+ ++ L + GI
Sbjct: 66  KSTEGATIYVTLEPCCHYGKTPPCIEAIIKNKFKRVVVGTLDQNPLVSGKSIKILRESGI 125

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++E E       +     E R  I LK A++ D  I      S  IT   S+  V
Sbjct: 126 EVKVGVLEKECIRLNEIFNFYIKENRPFIALKWAMTLDGKIATKEFKSKWITNRKSREFV 185

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTAL 241
           H LR +  +I+VGI TVL D+P+L CRLN  +  E    RI+LD   ++ LDS+I+K   
Sbjct: 186 HSLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKNQN 245

Query: 242 LAPVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
            +  +I T N  D +     +   I +I  +      ++ ++L  L  + + S+L+EGG 
Sbjct: 246 ESKTLIFTTNKKDKIKNEKLKDIGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEGGG 305

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVC 351
            +  +F+ ++ V+ I  + +  V G     +P+E   +        F  V    F  D+ 
Sbjct: 306 NLNFTFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGIRNVLDAFEFPEVNLKNFDKDIL 365

Query: 352 LE 353
           +E
Sbjct: 366 IE 367


>gi|295096804|emb|CBK85894.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 367

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 123/363 (33%), Positives = 179/363 (49%), Gaps = 18/363 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A++ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEMYMARAMKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSH+GR+PPC + +I  G+ RVV  + DP+ +V GRGL  L Q+GI +
Sbjct: 63  ARGATAYVTLEPCSHHGRTPPCCEALIAAGVSRVVAAMQDPNPQVVGRGLYRLQQEGIDV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M  + +     +L R       I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMQDAENINKGFLKRMRTGFPFIQLKLGASLDGRTAMANGESQWITSPQARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP +T R   L               P+RII+D   +++ + 
Sbjct: 183 LRAQSHAILTSSETVLADDPAMTVRWEELNADTQALYPQENLRQPLRIIVDSQNRVTPEH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           +I++        I    +D        +  +   +    DL  L+ +L  + V S+ VE 
Sbjct: 243 RIVQQPGE--TWIARTKEDTREWPEGVRSIMVPEHNGHLDLVVLMMLLGKQQVNSIWVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDV 350
           G  +A + + + LVD  ++Y +  ++G       +  G                  G DV
Sbjct: 301 GPMLAGALLQAGLVDEFLVYVAPKLLGNDARGLFVLPGLEKLADAPQLSFSEIRPVGPDV 360

Query: 351 CLE 353
           CL 
Sbjct: 361 CLH 363


>gi|238023203|ref|ZP_04603629.1| hypothetical protein GCWU000324_03130 [Kingella oralis ATCC 51147]
 gi|237865586|gb|EEP66726.1| hypothetical protein GCWU000324_03130 [Kingella oralis ATCC 51147]
          Length = 359

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 124/363 (34%), Positives = 187/363 (51%), Gaps = 14/363 (3%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P +  D + M  AL  +      TS NP V C+I     ++G+G     G PHAEV AL 
Sbjct: 3   PFTHQDTQHMQLALALAWQGRFSTSPNPRVGCVIAHGSQIVGQGYHVQAGAPHAEVHALA 62

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +AG  ARGATAYVTLEPC+H+GR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L Q
Sbjct: 63  QAGALARGATAYVTLEPCAHHGRTPPCAEALVRAGVSRVVAAMQDPNPLVAGKGLAILRQ 122

Query: 122 KGIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            G      + E+E +     +L+R   +R  + LKIA S D    +A   S  ITG  ++
Sbjct: 123 AGTQTASGLCEAEARALNRGFLSRIERQRPFVKLKIAASLDGKTALANGASQWITGEAAR 182

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             V + RA+S A+L GIGT+LAD+P+L  R+  +    P+RI+LD   +    S+II+  
Sbjct: 183 ADVQIQRAESCAVLTGIGTILADNPQLNVRIPTI--RQPLRIVLDRQLRTPARSRIIQDG 240

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVEGGAAVA 299
                +I T++     A      N++I      DL  LL  L     +  L+VE G+ +A
Sbjct: 241 GE--TLICTQSPANPFADY---PNVHIYRQPENDLSSLLAHLAREHQIGELMVEAGSTLA 295

Query: 300 HSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
            +FI + L D I+ Y++  ++G+       +P           +  V  +  G D+    
Sbjct: 296 TAFIQADLADEIVYYQAPKILGDSARGLFRLPENENTLTRPSKWQTVSVEALGDDIKWVL 355

Query: 355 IGK 357
             K
Sbjct: 356 QRK 358


>gi|304440657|ref|ZP_07400541.1| riboflavin biosynthesis protein RibD [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304370844|gb|EFM24466.1| riboflavin biosynthesis protein RibD [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 368

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 123/362 (33%), Positives = 184/362 (50%), Gaps = 15/362 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63
            D  FMS A+  ++  +G T TNP V C+IV++  +IG G     G  HAEV A+ +A  
Sbjct: 5   DDRYFMSRAIELAKNGIGATKTNPLVGCVIVRNEKIIGEGYHKVFGSCHAEVNAINDAKA 64

Query: 64  -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
            GE   GAT YV LEPCSHYG++PPCA  IIE  I RVV+   DP  +VSGRG++ L   
Sbjct: 65  KGENLDGATLYVNLEPCSHYGKTPPCADRIIEERITRVVIGNCDPFEKVSGRGIERLKNA 124

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   +++ E +     Y T     R  + LK  ++ D  I      S  IT   S+ 
Sbjct: 125 GIEVEVGVLKEECEKLNERYFTYIKNNRPFVVLKSGMTIDGKIATKTYESQWITSEESRK 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
             H LR   D I+VGI TVL DDP L  R  G   HSP RII+D   ++   +K++   L
Sbjct: 185 FSHELRGMCDGIMVGINTVLKDDPTLNVR-AGRYPHSPARIIVDSKLRIFPSAKVLSKDL 243

Query: 242 LAPVIIVTEN--DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295
               II T    D     +  + +N+N++    +    DL+ L+  L    ++S+L+EGG
Sbjct: 244 ENIAIIATTENCDKEKFEILSKMENVNVVIVKEKDKMVDLRDLMEKLKTFNISSILLEGG 303

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVC 351
            ++  S +  +LVD    + +  +IG  G+ +     +E+     +   V      +D+ 
Sbjct: 304 GSLNASMLREKLVDKFYFFIAPKIIGSDGVSAIGSMGIEKLDEAIDIKDVEVIKIATDIF 363

Query: 352 LE 353
           ++
Sbjct: 364 IK 365


>gi|126699306|ref|YP_001088203.1| riboflavin biosynthesis protein [Clostridium difficile 630]
 gi|255100831|ref|ZP_05329808.1| riboflavin biosynthesis protein [Clostridium difficile QCD-63q42]
 gi|255306720|ref|ZP_05350891.1| riboflavin biosynthesis protein [Clostridium difficile ATCC 43255]
 gi|115250743|emb|CAJ68567.1| Riboflavin biosynthesis protein ribD [Includes:
           Diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
           5-amino-6-(5-phosphoribosylamino)uracil reductase]
           [Clostridium difficile]
          Length = 370

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 115/362 (31%), Positives = 177/362 (48%), Gaps = 11/362 (3%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
                D  +M  A+  ++   G  + NP V C+IVKD  +IG+G     G  HAEV A+ 
Sbjct: 5   NQKEKDIYYMKKAIELAKNGEGFVNPNPLVGCVIVKDSNIIGKGYHEKFGSNHAEVNAIN 64

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            A +  + +T YV LEPCSHYG++PPC   II+  I+RVV+   DP+  V G G++ L  
Sbjct: 65  SAKQSLKDSTLYVNLEPCSHYGKTPPCVDKIIQNKIKRVVISTLDPNPLVCGNGVKKLKD 124

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
             I +   ++E E +    A+      KR    +K AVS D  I      S  I+   S+
Sbjct: 125 NNIDVTVGILEDEARDLNEAFFYHIKNKRPLCIVKSAVSLDGKIATKSLESKWISNESSR 184

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              H  R +  +I+VGI TVL D+P LTCRLN  +   P RI++D H KL L+S ++K  
Sbjct: 185 YLTHKYRNKYQSIMVGINTVLNDNPLLTCRLNQEKVSHPTRIVIDTHLKLPLNSNLVKD- 243

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
             +  I+ T   + +     ++ N+  I    +    DL+ ++  L    + S+LVEGGA
Sbjct: 244 KTSKTIVFTCCKESIKLSMLKENNVETIISPSKNNLVDLEFVMYKLGELNIDSVLVEGGA 303

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVC 351
            +  S   ++LVD + L+ S  +IG    P+ +    +                   D+ 
Sbjct: 304 TLNDSLFRNKLVDKVKLFLSPKIIGGKDAPTFVSGEGINHLSDSTQLTINNVTLIDGDIL 363

Query: 352 LE 353
           +E
Sbjct: 364 IE 365


>gi|170756114|ref|YP_001782503.1| riboflavin biosynthesis protein RibD [Clostridium botulinum B1 str.
           Okra]
 gi|169121326|gb|ACA45162.1| riboflavin biosynthesis protein RibD [Clostridium botulinum B1 str.
           Okra]
          Length = 365

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 118/358 (32%), Positives = 189/358 (52%), Gaps = 15/358 (4%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
             M  AL+ +    G  + NP V  ++VK+  +IG G   Y G PHAEV AL EAGE+A+
Sbjct: 6   FHMEKALKLAERGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGPHAEVYALREAGEKAK 65

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GAT YVTLEPCSHYG++PPCA+ I++ GI + ++ + DP+  V GRG+  L Q GI +V 
Sbjct: 66  GATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVT 125

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            +ME E K     ++    +K+  + LK A + D  I      S  ITG  ++ +V  +R
Sbjct: 126 GIMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATRTGESKWITGEEARYKVQQIR 185

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
                I+VGI TV+ D+P LT R+ G    SP  II+D + ++ L+SKI++T     + I
Sbjct: 186 NDLSGIMVGIDTVIKDNPLLTTRIEG--GRSPKAIIVDSNLRIPLESKILETFNKRAIYI 243

Query: 248 VTEN--DDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAH 300
                  +P    A       ++  +  +     L +L+  LV  GV S+L+EGG+ +  
Sbjct: 244 AATKKHKNPSKKNALENLGAKVLEFEENEEGKVPLNELMQYLVSEGVDSILLEGGSTLNF 303

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
           S +   +VD ++ + +  ++G     + +    +E          ++ +  G D+ +E
Sbjct: 304 SALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVESLKDIFKLENLKFEKIGQDILIE 361


>gi|325983451|ref|YP_004295853.1| riboflavin biosynthesis protein RibD [Nitrosomonas sp. AL212]
 gi|325532970|gb|ADZ27691.1| riboflavin biosynthesis protein RibD [Nitrosomonas sp. AL212]
          Length = 366

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 124/360 (34%), Positives = 190/360 (52%), Gaps = 13/360 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            SS D  FMS ALR +   +  T+ NP V C++  D  +IG G     G PHAE+ AL  
Sbjct: 2   FSSVDYAFMSYALRLAEKGLYSTTPNPRVGCVLTLDDRIIGSGWHEKAGQPHAEINALAS 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
             E A GATAY+TLEPCSHYGR+PPC   +I+ GI +V++ ++DP+  VSGRG   L Q 
Sbjct: 62  TSEAACGATAYITLEPCSHYGRTPPCVYALIDAGITKVIIAMEDPNPMVSGRGCMLLEQA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   +++ + +     ++ R + K+  I LK A S D    +    S  ITG  ++ 
Sbjct: 122 GITVQTGLLQVQAQALNIGFIMRMMHKKPWIRLKTAASLDGKTALNNGISQWITGEAARQ 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
             H  RA+S AI+ GIGTV +D+P+L+ R        P +II+D H  + L++K++++  
Sbjct: 182 DGHRWRARSCAIMTGIGTVKSDNPQLSVRHAE-TARQPKKIIVDSHLNIPLNAKLLQSDG 240

Query: 242 LAPVIIVTENDDPV-LALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
              V+I T +D+ V    A  +    +I         DLKK++T+L    +  +LVE G 
Sbjct: 241 E--VLIFTAHDESVEKKEALSRMGAQVIVMPNEKGAIDLKKMMTVLAAMEINEVLVEAGR 298

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGG---IPSP-LEEGYLEKNFMCVRRDYFGSDVCL 352
            +  + I + LVD +I Y +  ++G+     I  P L     +K          G D+ +
Sbjct: 299 ELNGALIEAGLVDEMIFYLAPHLLGDDARGMIKLPELTCLEQKKELKIQDVRMIGQDIRI 358


>gi|329122085|ref|ZP_08250693.1| riboflavin biosynthesis protein RibD [Dialister micraerophilus DSM
           19965]
 gi|327466892|gb|EGF12408.1| riboflavin biosynthesis protein RibD [Dialister micraerophilus DSM
           19965]
          Length = 378

 Score =  351 bits (902), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 118/371 (31%), Positives = 185/371 (49%), Gaps = 23/371 (6%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D ++MS AL  ++     T TNP V  ++VK+G V+G G     G  HAEV A +   
Sbjct: 4   NEDEKWMSHALDLAKHGYWYTETNPLVGAVLVKNGKVVGEGWHKKYGDVHAEVNAFKNCK 63

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E    AT YVTLEPC HYG++PPC   +++  ++RVV+ + DP+  VSG+ ++ L + GI
Sbjct: 64  ENTEHATLYVTLEPCCHYGKTPPCLNLVLQKKVKRVVIAMKDPNPLVSGKSIKILKENGI 123

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            ++  ++E+E       ++    E +  +  K A+S D  I      S  I+   S+N V
Sbjct: 124 QVIVGVLENEAVKLNEIFIKYITEHKPFVLYKAAMSIDGKISCYTGDSKWISSETSRNDV 183

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLSL 232
           H LR +  AI+VG GT+  D+P LT R   +            + +P+RII+D      +
Sbjct: 184 HYLRNKYKAIMVGAGTIKKDNPSLTSRFYIINKKNGEKELMKNQRNPIRIIVDGKLSSPI 243

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGV 287
           DSK+ +      V++ T   D      F+ K I +IY +       DL K L IL  +G+
Sbjct: 244 DSKVFQDGGK-TVVLTTSYADKKNVEKFKNKGIELIYSNLGNDGKVDLNKSLEILARKGI 302

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVR 342
            S+L+EGGA  A    N ++VD + +Y + I+IG    PS +    + K         + 
Sbjct: 303 NSILLEGGAETAAEAFNQKIVDKLRIYIAPIIIGGKTSPSIIGGSGVSKISDAIKLKNIS 362

Query: 343 RDYFGSDVCLE 353
            +    D   E
Sbjct: 363 INNLNEDTIFE 373


>gi|332307440|ref|YP_004435291.1| riboflavin biosynthesis protein RibD [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174769|gb|AEE24023.1| riboflavin biosynthesis protein RibD [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 372

 Score =  351 bits (902), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 117/366 (31%), Positives = 189/366 (51%), Gaps = 18/366 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
            S+ DA+ M+ A+R +      TS NP+V C++    G ++G+G     G PHAE+ A+ 
Sbjct: 4   FSALDAKMMALAIRLAEKGQYTTSPNPNVGCVLTDPKGNIVGQGWHQKAGTPHAEIHAIA 63

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +AGE  +GATAYVTLEPC+H+GR+ PC++ +I+ G+ RVV  + DP+  V+G GLQ LS 
Sbjct: 64  QAGERTKGATAYVTLEPCNHHGRTGPCSEALIKAGVSRVVAAMVDPNPLVAGSGLQKLSD 123

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            G+ +   ++E E K     ++ R       +T+K+A S D    +    S  ITG +++
Sbjct: 124 AGVAVSSGLLEREAKALNLGFIKRMKTGMPWVTVKLASSLDGKTALNNGESQWITGPLAR 183

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKL 230
             V   RA+S AIL G GTVLAD+P L  R + L              P RI+LD   ++
Sbjct: 184 EDVQRHRAKSCAILSGSGTVLADNPSLNVRYSELGFAKSELTEESLRQPGRILLDGRNQM 243

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
             D  +   +L +P++I+    +     A  ++   +      DL  ++  L  RG   +
Sbjct: 244 RPDLHLF--SLSSPIVIINSQPNTADFPAHVEQYQALSNGAQLDLHDVMKHLGQRGFNQI 301

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYF 346
            VE GA +A + + ++L+D +ILY++  ++G+ G        L +               
Sbjct: 302 WVEAGAKLAGALLQNKLIDELILYQAPKLLGDKGRDLFAVDELTQMQQAFELQWQDVRQV 361

Query: 347 GSDVCL 352
           G D+ L
Sbjct: 362 GPDLKL 367


>gi|308389915|gb|ADO32235.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
           alpha710]
 gi|325135601|gb|EGC58218.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis M0579]
 gi|325207519|gb|ADZ02971.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
           NZ-05/33]
          Length = 369

 Score =  351 bits (902), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 128/366 (34%), Positives = 190/366 (51%), Gaps = 11/366 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL+ +      TS NP V C+I +   ++G+G     G PHAEV AL +
Sbjct: 2   FSETDISMMQNALKLAALGRFSTSPNPRVGCVIAQGSQIVGQGFHVKAGEPHAEVHALRQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   
Sbjct: 62  AGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++ 
Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V +LRA+S A+L GIGTVLAD+P L  R        P RI+LD   +L LDS ++    
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPLDSHLLTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGA 296
               I   E D+  L    +  ++ I+          DL  L+ +L   G+  L+VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYRKHAHVRILMPSETAGGKIDLNSLMRLLADEGIGELIVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +  +F+   L D I+LYRS  ++G G     +P           +M V  +  G D+  
Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGSGKDLFSLPENRAALSAPPLWMPVSTEILGHDIKT 360

Query: 353 EYIGKN 358
            +   +
Sbjct: 361 VFRKND 366


>gi|89097868|ref|ZP_01170755.1| riboflavin specific deaminase [Bacillus sp. NRRL B-14911]
 gi|89087370|gb|EAR66484.1| riboflavin specific deaminase [Bacillus sp. NRRL B-14911]
          Length = 371

 Score =  351 bits (902), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 122/359 (33%), Positives = 178/359 (49%), Gaps = 9/359 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  +R  +G TS NP V  ++VKDG + G G     G  HAEV A+  A   
Sbjct: 3   DEDYMDLALSLARKTIGQTSPNPCVGAVVVKDGQIAGMGAHLKAGTQHAEVHAIRMADGL 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGA  YVTLEPCSH+G++PPCA  IIE GI+RVV+   DP+  V+GRG+  L   GI +
Sbjct: 63  ARGAEIYVTLEPCSHHGKTPPCADLIIESGIKRVVIASIDPNPIVAGRGIAKLEAAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +   E +    A+       R ++T+K A S D         S  IT   S+  VH 
Sbjct: 123 EVGIRREEAEEINSAFFHFMRTSRPYVTIKAAASFDGKTAANTGDSQWITSPESREDVHR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR + DAIL G+ TV+ D+P+LT RL      +P+R+ILD   ++  D+ I+       +
Sbjct: 183 LRHEHDAILTGVNTVIHDNPQLTARLP-RGGKNPIRVILDSTLRIPGDAAILHDQKAPVI 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLLVEGGAAVAHSFI 303
           I    N D   A   +     +++    ++    +L  L  R + S+ VEGG+ +  SFI
Sbjct: 242 IFTGSNYDNSKAEQIKALGTELVHFPEEEVPAGKVLEELGTRQILSVFVEGGSEIHASFI 301

Query: 304 NSRLVDSIILYRSQIVIGE-GGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEYIGK 357
              L   IILY +  +IG    +P    EG    +          +  G D+ +  + +
Sbjct: 302 KEGLFQQIILYAAPKIIGGRKAVPFIGGEGISSMDQSTPLAFKSAERIGPDLKIIAVPQ 360


>gi|145298017|ref|YP_001140858.1| pyrimidine deaminase/reductase RibD [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850789|gb|ABO89110.1| pyrimidine deaminase/reductase RibD [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 369

 Score =  351 bits (901), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 123/367 (33%), Positives = 189/367 (51%), Gaps = 21/367 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D ++M+ AL  +R     T+ NP V  ++VK G+V+G G     G PHAE+ AL E
Sbjct: 2   FSQDDYQWMNRALELARRGRYTTAPNPCVGAVLVKAGVVVGEGWHKRAGEPHAEIYALHE 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+EARGATAYVTLEPCSH+GR+PPCA+ +I+ G+ RVV  + DP+  V GRGL+ LS+ 
Sbjct: 62  AGDEARGATAYVTLEPCSHHGRTPPCAEALIKAGVTRVVAAMVDPNPEVGGRGLRMLSEA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  D  ++ SE +     +  R       +T+K+  S D    MA   S  ITG +++ 
Sbjct: 122 GIKTDFGLLSSEAEALNPGFFKRMRTAFPLVTVKLGASLDGRTAMASGESQWITGPLARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V  LRA  DA+L    TVLAD   LT R + L               P+R+I+D   +L
Sbjct: 182 DVQRLRAGHDAVLSSAETVLADGASLTVRWDELPPSLKATYAKETLRQPLRVIVDSRNRL 241

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           + D  + +     PV++             ++  + ++     DL  L  +L  R + S+
Sbjct: 242 TPDLPLFQ--STGPVLLARHKAAGDWPEWVQQLELPLLD-GKLDLVSLFMLLAKRNINSV 298

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345
           LVE G  +  + ++  LVD ++LY++  ++G+ G     +P+ L   +            
Sbjct: 299 LVEAGPRLCGALLDKGLVDELVLYQAPKLMGDEGRGLFHLPA-LTRLFQAPKLCIKDVRL 357

Query: 346 FGSDVCL 352
            G D+ +
Sbjct: 358 VGQDIRI 364


>gi|168216370|ref|ZP_02641995.1| riboflavin biosynthesis protein RibD [Clostridium perfringens NCTC
           8239]
 gi|182381291|gb|EDT78770.1| riboflavin biosynthesis protein RibD [Clostridium perfringens NCTC
           8239]
          Length = 365

 Score =  351 bits (901), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 118/361 (32%), Positives = 183/361 (50%), Gaps = 13/361 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  FM  AL  +R   G  + NP V  +IVK G +IG+G   + G  HAE+ A+  + +
Sbjct: 1   MDEFFMKKALELARKGEGYVNPNPLVGAVIVKGGEIIGQGYHEFFGGNHAEINAINSSIK 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
              GAT YVTLEPC HYG++PPC + II+   +RVVV   D +  VSG+ ++ L + GI 
Sbjct: 61  STEGATIYVTLEPCCHYGKTPPCIEAIIKNKFKRVVVGTLDQNPLVSGKSIKILRESGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   ++E E       +     E R  I LK A++ D  I      S  IT   S+  VH
Sbjct: 121 VKVGVLEKECIRLNEIFNFYIKENRPFIALKWAMTLDGKIATKEFKSKWITNRKSREFVH 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALL 242
            LR +  +I+VGI TVL D+P+L CRLN  +  E    RI+LD   ++ LDS+I+K    
Sbjct: 181 SLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKNQNE 240

Query: 243 APVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
           +  +I T N  D +     +   I +I  +      ++ ++L  L  + + S+L+EGG  
Sbjct: 241 SKTLIFTTNKKDKIKNEKLKDIGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEGGGN 300

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352
           +  +F+ ++ V+ I  + +  V G     +P+E   +        F  V    F  D+ +
Sbjct: 301 LNFTFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGIRNVLDAFEFPEVNLKNFDKDILI 360

Query: 353 E 353
           E
Sbjct: 361 E 361


>gi|154686573|ref|YP_001421734.1| hypothetical protein RBAM_021420 [Bacillus amyloliquefaciens FZB42]
 gi|154352424|gb|ABS74503.1| RibD [Bacillus amyloliquefaciens FZB42]
          Length = 371

 Score =  351 bits (901), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 113/361 (31%), Positives = 173/361 (47%), Gaps = 9/361 (2%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            +  +M+ A+  +R   G T +NP V  ++VK+G ++G G     G  HAEV A+  AG 
Sbjct: 1   MEEYYMNTAIELARRGEGQTQSNPLVGAVVVKNGQIVGMGAHLQYGEAHAEVHAIHMAGR 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            A+GA  YVTLEPCSHYG++PPCA+ II+ GI+RV + V DP+  V+G+G+  L   GI 
Sbjct: 61  HAKGADLYVTLEPCSHYGKTPPCAELIIKSGIKRVFIAVKDPNPLVAGKGIGMLEAAGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   ++  + +     +L        ++TLK A S D         S  IT   ++    
Sbjct: 121 VKTGLLRQQAEELNKMFLHFMRTGLPYVTLKAAASLDGKTATETGDSKWITSEAARLDAQ 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             R    +ILVG GTV AD+P LTCRL       P+R+ILD    +   + ++       
Sbjct: 181 QYRKSHQSILVGAGTVKADNPSLTCRLPDA-VKQPVRVILDTKLTIPETANVLTDGAAPT 239

Query: 245 VIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            I   +  D           I +I    D   + ++L+IL   G+ S+ VEGGA+V  SF
Sbjct: 240 WIFTAKGADVQKKDRLTALGIKVIPLETDRIHVPEVLSILAENGIMSVYVEGGASVHGSF 299

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIGK 357
           +       +  Y +  +IG    PS +     +      +    +    G D+ L  I K
Sbjct: 300 VKEDCFQELHFYFAPKLIGGTLAPSLISGEGFQSMKDVPHLQFTQITQIGPDIKLTAIPK 359

Query: 358 N 358
           +
Sbjct: 360 D 360


>gi|77361290|ref|YP_340865.1| riboflavin biosynthesis protein [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876201|emb|CAI87423.1| Riboflavin biosynthesis protein [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 382

 Score =  351 bits (901), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 115/372 (30%), Positives = 187/372 (50%), Gaps = 18/372 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            + +D  +M+ A+  ++     T+ NP+V C++VK+  ++G G     G  HAEV AL  
Sbjct: 7   FNQYDEMYMARAIELAKKGRFTTTPNPNVGCVLVKNNEIVGEGFHQLAGQGHAEVNALAM 66

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG +A+GATAYVTLEPCSHYGR+PPCA+ +   G+ +V+  + D + +V+G+GL+ LS  
Sbjct: 67  AGSKAKGATAYVTLEPCSHYGRTPPCAEGLKAAGVVKVIAAMVDSNPQVAGKGLKILSDA 126

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E++ +     +  R      ++T K+A S D    +    S  ITG  ++ 
Sbjct: 127 GIEVAYGLLEAQARALNLGFFKRMEHGLPYVTCKMAASIDGKTALNNGQSKWITGAAARQ 186

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--------HSPMRIILDPHFKLSLD 233
            V L RAQS AIL G  TVL DD +L  R N L +          P+R+I+D   +L+ +
Sbjct: 187 DVQLYRAQSCAILTGADTVLVDDAKLNVRKNELPQALPTQLPLRQPVRVIIDSQNRLTPN 246

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292
             +   A+ + +II T   D         K+I +   + + DL  +L  L      ++ +
Sbjct: 247 LALF--AIESEIIIFTTKVDKSQHWPHFVKHIVVTASNSKVDLTAVLKKLAKLQFNTVWL 304

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFG 347
           E GA +A   +   L+D  I Y +  +IG  G  S +    L       +         G
Sbjct: 305 EAGATLAGKMVELDLIDEFIFYLAPKLIGCDG-KSLVNFPELISMQNTIDLTFNECTRIG 363

Query: 348 SDVCLEYIGKNL 359
            D+ +  +  +L
Sbjct: 364 DDLRISAVKSSL 375


>gi|167623139|ref|YP_001673433.1| riboflavin biosynthesis protein RibD [Shewanella halifaxensis
           HAW-EB4]
 gi|167353161|gb|ABZ75774.1| riboflavin biosynthesis protein RibD [Shewanella halifaxensis
           HAW-EB4]
          Length = 373

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 130/375 (34%), Positives = 197/375 (52%), Gaps = 22/375 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D++ MS A+  ++  +  T  NPSV  +IVKDG ++G G     G PHAEV AL  
Sbjct: 2   WSIEDSQMMSLAIELAQKGMYTTRPNPSVGSVIVKDGEIVGEGYHIRAGGPHAEVYALNM 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG +A+GATAYVTLEPCSHYGR+PPCA+ +IE G+ RVV+ V DP+  VSGRG+  L   
Sbjct: 62  AGADAKGATAYVTLEPCSHYGRTPPCAKALIEHGVSRVVIAVTDPNPEVSGRGIAMLRDA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   +M  E K     +L R  +    +T+K+A S D    ++   S  ITG  +++
Sbjct: 122 GIRVDVGLMTEEAKQVNLGFLKRMEKGLPWVTVKLAASLDGKTALSNGVSKWITGPEARS 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR----------LNGLQEHSPMRIILDPHFKLS 231
            V  LRA+  A++ G+ T+LADDP L  R          L   + H P+R++LD   +L 
Sbjct: 182 DVQRLRARHCALVTGVETILADDPCLNVRHSELGSLAGQLAPAEIHQPLRVVLDSQARLG 241

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGV 287
            +  +  +A  +P+++V+    P    A    ++            DL+ LL++L  +  
Sbjct: 242 TELNLFNSA--SPILLVSTIAYPESIQAAWPAHVQSQVLPAVDARIDLQALLSLLG-KSC 298

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRR 343
            ++LVE GA +A +F+N  LVD I+LY++  ++G  G      + +           +  
Sbjct: 299 NTVLVEAGATLAGAFVNQGLVDEIVLYQAMKILGGQGRNLLALDDFQAMSDIPRINLIDE 358

Query: 344 DYFGSDVCLEYIGKN 358
              G D  L     N
Sbjct: 359 RKVGKDTRLTLRVSN 373


>gi|330959948|gb|EGH60208.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 381

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 129/364 (35%), Positives = 188/364 (51%), Gaps = 20/364 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            ++ D  +M+ AL  +R  +  T  NP V C+IV+DG ++G G  A  G PHAEV AL +
Sbjct: 8   QAALDVHYMARALELARKGLYSTHPNPRVGCVIVRDGQIVGEGWHARAGEPHAEVHALRQ 67

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH GR+PPCA  +++ G+ RVV  + DP+  VSGRGL  L   
Sbjct: 68  AGELARGATAYVTLEPCSHQGRTPPCADALVDAGLARVVAAMQDPNPEVSGRGLLRLMNA 127

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++ESE +     +L R    R ++ +K+A+S D    MA   S  ITG  +++
Sbjct: 128 GIGVQCGVLESEARALNKGFLKRMETGRPYVRVKLAMSLDGRTAMASGESQWITGPEARS 187

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH----------SPMRIILDPHFKLS 231
            V  LRAQS  +L G  TVLAD+  LT R + L  +           P+R+++D   ++ 
Sbjct: 188 AVQRLRAQSSVVLTGADTVLADNARLTVRPDELGLNAEMSALAATSPPLRVLIDGRLRVP 247

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVT 288
           LD+   +       ++VT            + +  +   D     DL+KL+  L  RGV 
Sbjct: 248 LDAPFFQAGSA---LVVTCAAASARGRYQEEGHEMLALADSAGHVDLRKLMGELANRGVN 304

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345
            +LVE G  +A +F    LVD   ++ +   +G    P    PL +         V    
Sbjct: 305 EVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARPLLDLPLAQMSEALELQIVEMRA 364

Query: 346 FGSD 349
            G+D
Sbjct: 365 VGND 368


>gi|319408448|emb|CBI82103.1| Riboflavin biosynthesis protein ribD [Bartonella schoenbuchensis
           R1]
          Length = 375

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 157/375 (41%), Positives = 226/375 (60%), Gaps = 12/375 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAE 56
           M   + D RFM+AA+R ++ H+GLT  NPSV  LIV+D      ++G GVTA  G PHAE
Sbjct: 2   MNKEAQDNRFMAAAIRLAQRHIGLTGQNPSVGALIVRDDDGKASIVGYGVTAIHGRPHAE 61

Query: 57  VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           VQAL  AG  + GATAYVTLEPCSHYG + PC   +I+ GI RVV+ + DPD RV GRG+
Sbjct: 62  VQALLMAGPLSHGATAYVTLEPCSHYGETSPCVNALIDSGISRVVIALTDPDKRVCGRGI 121

Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
             L   GI +V+ ++  E    L AYL  +  +R  +TLK+A+S DN IG+   G V I+
Sbjct: 122 ALLRAAGIEVVEGVLAREAFETLSAYLCIKKLQRCEVTLKMAISADNGIGIKKKGRVEIS 181

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
           G  +    H+LRAQ+DAI+VGIGT+LAD+P+L+CRL GL+  SP+RIILD + ++  D+K
Sbjct: 182 GAQAHTYTHILRAQNDAIMVGIGTILADNPQLSCRLPGLEMRSPVRIILDANLRIPFDAK 241

Query: 236 IIKTALLAPVIIVTEN--DDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTS 289
           +I+TA   P  ++      +    +A  +  + I   +          +L +L  RG+ S
Sbjct: 242 VIQTATKIPTWVICNATFAEKSKKIALEQCGVCIFPIEMSAHLMQPFAILQLLCQRGINS 301

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           +L+EGGA     F+N+  VD +I + + +++G   I +P    YL + F  +     G+D
Sbjct: 302 ILLEGGAKTGEIFLNAGCVDQLICFHAPVILGADRIDAPHFATYLSE-FNEIETKMLGND 360

Query: 350 VCLEYIGKNLCLQEL 364
              ++  K LCLQ L
Sbjct: 361 RLCKWRRKTLCLQGL 375


>gi|88801234|ref|ZP_01116773.1| riboflavin biosynthesis protein [Reinekea sp. MED297]
 gi|88776020|gb|EAR07256.1| riboflavin biosynthesis protein [Reinekea sp. MED297]
          Length = 366

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 129/369 (34%), Positives = 200/369 (54%), Gaps = 14/369 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M ++S DA +M+ AL+ +      T+ NP+V C+IV+DG ++G G     G PHAEV AL
Sbjct: 3   MSMTSHDA-WMAQALKLAARGRRTTTPNPNVGCVIVRDGELVGSGYHRKAGTPHAEVHAL 61

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAG +ARGATAYVTLEPCSHYG++PPCA  +I+ G+  VV  + DP+ +V+G+GL+ L 
Sbjct: 62  AEAGSKARGATAYVTLEPCSHYGKTPPCADALIKAGVANVVCAMTDPNPQVAGQGLEKLR 121

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI ++  ++ +E +     +L R    R  +  K+A S D    +A   S  ITG  +
Sbjct: 122 NAGIEVISGVLNAEAERLNRGFLKRMRTGRPWLVAKMAASLDGGTALANGDSQWITGPEA 181

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  V   RA S A++ G+ TV+AD+P L  RL+G  +  P+RIILD   +  + S I+ T
Sbjct: 182 RQDVQSGRADSCAVVTGVETVVADNPSLNVRLDGA-DRQPVRIILDTQARTPVPSTIV-T 239

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGG 295
                VII     +P+     +     ++      D  DL   L+    +    + +E G
Sbjct: 240 LPGRTVIIHGAQANPLSLERLQAAGFELVEMATANDHIDLPAFLSWCGQQAFNRVWLEAG 299

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           A +  +F    L+D + LY++ I++G  G   P+ +  L+      R D    DV   ++
Sbjct: 300 ATLTGAFAEQGLLDELWLYQAPIMLG--GATRPVADFRLDSLKQAHRFDV--DDV--RFV 353

Query: 356 GKNLCLQEL 364
           GK++  Q L
Sbjct: 354 GKDIRWQLL 362


>gi|167630209|ref|YP_001680708.1| riboflavin biosynthesis protein ribd [Heliobacterium modesticaldum
           Ice1]
 gi|167592949|gb|ABZ84697.1| riboflavin biosynthesis protein ribd [Heliobacterium modesticaldum
           Ice1]
          Length = 374

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 140/369 (37%), Positives = 190/369 (51%), Gaps = 12/369 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   D  FM  AL  +   +G TS NP V  ++VKDG VIG G     G PHAEV AL +
Sbjct: 1   MIPEDFSFMDRALELAALALGRTSPNPVVGAVVVKDGRVIGEGYHRKAGTPHAEVHALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A G T YVTLEPC+H+GR+PPC + II   I RVV  V DP+ +V+G+G   L + 
Sbjct: 61  AGEAACGGTLYVTLEPCNHHGRTPPCTEAIIAAKISRVVAAVADPNPQVAGQGFARLREA 120

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI VD  +M          + T    KR  + LK A++ D  I  A   S  ++   S+ 
Sbjct: 121 GIEVDVGVMADAAITINQPFFTWVTRKRPWVLLKWAMTADGKIATASGDSRWVSSPASRR 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +VH  R + DAILVGIGTVLADDP+LT RL      +P+RII+D   +  L +K++  A 
Sbjct: 181 KVHQWRNRLDAILVGIGTVLADDPQLTVRLAEKDCRNPIRIIVDSKARTPLTAKVLS-AE 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGA 296
              +I VTE        A  +    ++ C      C DL  LL  L    VTSLLVEGGA
Sbjct: 240 AKTIIAVTEAAPAEQVAALEQAGATVLRCPADAGGCVDLSYLLHRLACDNVTSLLVEGGA 299

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVC 351
            +  +F++  L D   ++ +  ++G  G PSP+            R         G D  
Sbjct: 300 RIHGAFLDGNLADRAAIFLAPKIVGGEGAPSPVGGTGAALMAKARRLQRCVMTSVGDDWL 359

Query: 352 LEYIGKNLC 360
           LE + + + 
Sbjct: 360 LEGVLQEVR 368


>gi|294101991|ref|YP_003553849.1| riboflavin biosynthesis protein RibD [Aminobacterium colombiense
           DSM 12261]
 gi|293616971|gb|ADE57125.1| riboflavin biosynthesis protein RibD [Aminobacterium colombiense
           DSM 12261]
          Length = 369

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 192/368 (52%), Gaps = 15/368 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M  A+  +R   G TS NP V C+IVK+  ++  G     G PHAEV+AL+ AG+
Sbjct: 8   DDEYYMRRAISLARRGTGQTSPNPLVGCVIVKEDTIVAEGYHRSYGMPHAEVEALQRAGD 67

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
            A+GAT YV LEPC+H+G++PPCA  +    + RVV+ + DP+  V+G+G++ L     I
Sbjct: 68  GAKGATVYVNLEPCAHFGKTPPCAPQLARSKVSRVVIGMVDPNAVVNGKGVEILRSNQLI 127

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
               ++E E K     ++ R  ++R   TLK A + D  I +    S  IT   S+N+ H
Sbjct: 128 TETGVLEDECKWVNRGFIRRVRDQRPWFTLKSASTIDGQIALPNGESQWITSEESRNKAH 187

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
           LLRA+ D I+VG+GTVL DDP LT R       SP+RI++D   +   D+ I++      
Sbjct: 188 LLRAEHDGIMVGVGTVLRDDPSLTVR--HTVGRSPIRIVVDTMLRTPADAAILRGDGA-- 243

Query: 245 VIIVTENDDP-VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299
           +I+   +           K    I Y   +    DL+    IL  RG+ S+LVEGGA +A
Sbjct: 244 IILAGISAQKMGKHDQLSKAGAEIYYLPEKNNRVDLRSAAIILGERGLNSVLVEGGATLA 303

Query: 300 HSFINSRLVDSIILYRSQIVIGEG---GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
            +FI  +L+D + L+ +  ++G+G        +        F  +     G D+ +E + 
Sbjct: 304 SAFIQEKLIDGLSLFIAPTIMGQGISLFKEIVVPSLDKLIRFRVLNMSRTGRDIWIEGVP 363

Query: 357 KNLCLQEL 364
           +  C  +L
Sbjct: 364 E--CSPDL 369


>gi|114771641|ref|ZP_01449045.1| riboflavin biosynthesis protein RibD [alpha proteobacterium
           HTCC2255]
 gi|114547713|gb|EAU50603.1| riboflavin biosynthesis protein RibD [alpha proteobacterium
           HTCC2255]
          Length = 365

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 134/363 (36%), Positives = 195/363 (53%), Gaps = 11/363 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M   + D R+M  AL       G T  NP V C+IVK+ +VIGRG T  GG PHAE  AL
Sbjct: 1   MINKNTDERWMRLALSLGARGAGRTWPNPFVGCVIVKNSLVIGRGYTQQGGRPHAETVAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           ++A  +A  +T YVTLEPC+H G++PPC   +I+ GI+RVV+   DPD RVSG+G+Q L 
Sbjct: 61  QQASNDAENSTVYVTLEPCAHTGKTPPCVNNLIKAGIKRVVIAAIDPDHRVSGKGIQILK 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI +   +++ E +     + +   +KR  ++LKIA S D  I      S  +TG  S
Sbjct: 121 NAGIEVSVGILKEEAEKAHAGFFSILNKKRPFLSLKIATSIDGRIATQTGNSKWLTGAES 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  VH LRA  DA+LVG GTV AD+P L  R  G   + P+RI++D + K+   S +I +
Sbjct: 181 RQFVHYLRATHDAVLVGRGTVEADNPSLNVRGFGRAVNQPVRIVMDSNLKIDTKSNLINS 240

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGG 295
           A   P+ I    +     L+  K     I C       DL+  +  L   G+T +L EGG
Sbjct: 241 AKEIPLWICHAKESEFSKLS--KTGAMSIACKHKNGGIDLQDAMENLAKNGLTRILCEGG 298

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVC 351
             +A S +N  LVD +I+ ++ +VIG+ G  +     ++      NF  +     G+DV 
Sbjct: 299 GKLAASLLNENLVDELIVMQAGLVIGKEGTAAVSGLGIDALVDAPNFDMLETKRIGNDVL 358

Query: 352 LEY 354
             +
Sbjct: 359 SIW 361


>gi|310766817|gb|ADP11767.1| Riboflavin biosynthesis protein RibD [Erwinia sp. Ejp617]
          Length = 367

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 125/366 (34%), Positives = 185/366 (50%), Gaps = 18/366 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL  +R     T+ NP+V C++V+DG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEIYMARALELARRGRFTTTPNPNVGCVLVRDGQIVGEGYHMRAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           + GATAYVTLEPCSH+GR+PPC + +I  GI+RVV  + DP+ +V+GRGL  L Q GI +
Sbjct: 63  SLGATAYVTLEPCSHHGRTPPCCEALIAAGIKRVVTAMQDPNPQVAGRGLYRLQQAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M  E +     +L R       + LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMQEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPEARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLAD+P LT R + L               P+R+I+D   +++ + 
Sbjct: 183 LRAQSSAILSTSATVLADNPALTVRHDELDSASLADYPVDLLRQPVRVIVDAQNRVTPEY 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           ++I  A      +   + D         + I  +Y +  DL  LL +L  + + S+ VE 
Sbjct: 243 RLI--AQPGETWLARSSGDRQQWPENVSQLIVPLYQNRLDLVSLLMLLGKKQINSVWVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           GA  A + + + +VD +I+Y +  ++G+ G        LE       F        G D+
Sbjct: 301 GAQFAGALLQAGVVDELIVYLAPKLLGDAGRGLCQLPGLETLAAAPAFTFSDIRQVGPDI 360

Query: 351 CLEYIG 356
            L    
Sbjct: 361 RLTLTP 366


>gi|313891665|ref|ZP_07825272.1| riboflavin biosynthesis protein RibD [Dialister microaerophilus
           UPII 345-E]
 gi|313119943|gb|EFR43128.1| riboflavin biosynthesis protein RibD [Dialister microaerophilus
           UPII 345-E]
          Length = 378

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 118/371 (31%), Positives = 184/371 (49%), Gaps = 23/371 (6%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D ++MS AL  ++     T TNP V  ++VK+G VIG G     G  HAEV A +   
Sbjct: 4   NEDEKWMSHALDLAKHGYWYTETNPLVGAVLVKNGKVIGEGWHKKYGDVHAEVNAFKNCK 63

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E    AT YVTLEPC HYG++PPC   +++  ++RVV+ + DP+  VSG+ ++ L + GI
Sbjct: 64  ENTEHATLYVTLEPCCHYGKTPPCLNLVLQKKVKRVVIAMKDPNPLVSGKSIKILKENGI 123

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            ++  ++E+E       ++    E +  +  K A+S D         S  I+   S+N V
Sbjct: 124 QVIVGVLENEAVKLNEIFIKYITEHKPFVLYKAAMSIDGKTSCYTGDSKWISSETSRNDV 183

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLSL 232
           H LR +  AI+VG GT+  D+P LT R   +            + +P+RII+D      +
Sbjct: 184 HYLRNKYKAIMVGAGTIKKDNPSLTSRFYIINKKNGEKELMKNQRNPIRIIVDGKLSSPI 243

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGV 287
           DSK+ +      V++ T   D      F+ K I +IY +       DL K L IL  +G+
Sbjct: 244 DSKVFQDGGK-TVVLTTSYADKKNVEKFKNKGIELIYSNLGNDGKVDLNKSLEILARKGI 302

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVR 342
            S+L+EGGA  A    N ++VD + +Y + I+IG    PS +    + K         + 
Sbjct: 303 NSILLEGGAETAAEAFNQKIVDKLRIYIAPIIIGGKTSPSIIGGFGVSKISDAIKLKNIS 362

Query: 343 RDYFGSDVCLE 353
            +    D   E
Sbjct: 363 INNLNEDTIFE 373


>gi|296332262|ref|ZP_06874724.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674964|ref|YP_003866636.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296150576|gb|EFG91463.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413208|gb|ADM38327.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 361

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 117/355 (32%), Positives = 174/355 (49%), Gaps = 9/355 (2%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            +  +M  AL  ++   G T +NP V  ++VKDG ++G G     G  HAEV A+  AG 
Sbjct: 1   MEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGS 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            A+GA  YVTLEPCSHYG++PPCA+ II  GI+RV V + DP+  V+GRG+  + + GI 
Sbjct: 61  HAKGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMIEKAGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           + + ++  + +     +L        ++TLK A S D     +   S  IT   ++    
Sbjct: 121 VKEGILADQAEKLNEKFLHFMRTGLPYVTLKAAASLDGKTATSTGDSKWITSEAARQDAQ 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             R    +ILVG+GTV+AD+P LTCRL  +    P+R+ILD    +  D+++I       
Sbjct: 181 QYRKTHQSILVGVGTVIADNPSLTCRLPDVT-KQPVRVILDTALSIPEDTQVICDQAAPT 239

Query: 245 VIIVTENDDPVLALAFRKKNINI--IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            I  T   D           +NI  +  +   +  +L IL   GV S+ VEGG+AV  SF
Sbjct: 240 WIFTTARADEEKKKRLSAFGVNIFTLETERIQVPDVLKILAEEGVMSVYVEGGSAVHGSF 299

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCL 352
           +       II Y +  +IG    PS +     +                G D+ L
Sbjct: 300 VKEGCFQEIIFYFAPKLIGGTHSPSLISGEGFQSMKDVPLLQFTDITQIGRDIKL 354


>gi|328948002|ref|YP_004365339.1| riboflavin biosynthesis protein RibD [Treponema succinifaciens DSM
           2489]
 gi|328448326|gb|AEB14042.1| riboflavin biosynthesis protein RibD [Treponema succinifaciens DSM
           2489]
          Length = 390

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 126/374 (33%), Positives = 186/374 (49%), Gaps = 21/374 (5%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--- 66
           FM  A+  ++   G    NP V  +I KDG +I  G     G  HAE  AL+ A E+   
Sbjct: 18  FMQRAIELAKRGGGKVHPNPLVGAVIEKDGKIIAEGFHHEYGNLHAERDALKNAAEKNAC 77

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            RGA  YVTLEPC H G+ PPC Q II+ GI+ VV+   DP+  V+G+G+  L   GI I
Sbjct: 78  VRGANLYVTLEPCCHTGKQPPCTQAIIDAGIKNVVIGSRDPNSLVNGKGVAQLENAGIKI 137

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
               M++E       +      KR  + +K A S D    ++   S  IT   S+  VH 
Sbjct: 138 FRDFMKAECDSLNEIFFYYITAKRPFVIVKYAQSADGKTSLSSGESKWITNESSREYVHY 197

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR  + A++ GI TVL DDP LTCR+ G + + P+RI+LD   K+ L+S ++KTA   P+
Sbjct: 198 LRGTTAAVMCGIQTVLKDDPLLTCRIKGEELNQPVRIVLDTELKIPLESNLVKTANEVPL 257

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           II T +D      A  +K   +I  + +    D+ ++L  L    + S+LVE G ++  S
Sbjct: 258 IIFTCSDS-AKKSALEEKGAKVIQIEKKDSHIDILQVLKKLGEFSIDSVLVESGGSLNSS 316

Query: 302 FI-----NSRLVDSIILYRSQIVIGE--GGIPSPLEEGYLEK-----NFMCVRRDYFGSD 349
                     LV+ ++ + +  ++G   G + SP++           N        F  D
Sbjct: 317 LFFYGKEKKCLVNKVLCFVAPKILGGINGTVHSPVQGIECSSLLSCVNLALKNVKTFSGD 376

Query: 350 VCLEYIGKNLCLQE 363
           + LEY  K  CL+E
Sbjct: 377 LLLEYDFKEPCLEE 390


>gi|256821696|ref|YP_003145659.1| riboflavin biosynthesis protein RibD [Kangiella koreensis DSM
           16069]
 gi|256795235|gb|ACV25891.1| riboflavin biosynthesis protein RibD [Kangiella koreensis DSM
           16069]
          Length = 372

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 114/371 (30%), Positives = 190/371 (51%), Gaps = 15/371 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  ++ D+ +M+ A++ +      T TNP V C++VKD I+IG G     G  HAE+ AL
Sbjct: 1   MSFTAQDSSYMARAIQLAPRGWFTTRTNPRVGCVLVKDNIIIGEGWHEKPGFAHAEINAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE A+GATAYVTLEPC+H+G++ PCA+ ++E G+ RVV  + DP+  V+G+G++ L 
Sbjct: 61  NHAGESAKGATAYVTLEPCAHHGKTGPCAEALVEAGVARVVAAMLDPNPLVAGKGMKILE 120

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI  +  +M+++ +     ++ R  +    +  K+ +S D    MA   S  ITG  +
Sbjct: 121 KAGIKTEYGLMQAQAETLNPGFIKRMTKGLPRVIAKVGMSLDGRTAMAIGESQWITGASA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH----SPMRIILDPHFKLSLDSK 235
           +  V  LRA+S AI+ G GTV+ D+P +  R      +     P+R+I+D    +  D+K
Sbjct: 181 RRDVQRLRAESGAIITGSGTVVIDNPSMNVREQAFTANPHFTQPVRVIIDSQNIVEPDAK 240

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIY------CDCRDLKKLLTILVGRGVTS 289
           I         ++     +        +K + ++           DLK LL +L   G+  
Sbjct: 241 IFSHEGHC-WLVSGHLSEKGYPANVEQKTVALLPGKDEVSHQKVDLKALLIMLAEAGIND 299

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYF 346
           +L+E G+ +  +F+   LVD +++Y +  ++G    P    PLE                
Sbjct: 300 VLIEAGSGLVGAFVAQELVDELVVYMAPKLMGSAARPMFQLPLETMQQNIELTLNDIRQI 359

Query: 347 GSDVCLEYIGK 357
           G+D+ L Y  K
Sbjct: 360 GNDLRLNYYFK 370


>gi|332534978|ref|ZP_08410796.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035596|gb|EGI72088.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 377

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 114/366 (31%), Positives = 181/366 (49%), Gaps = 18/366 (4%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             +  D  +M+ A+  ++     T+ NP+V C++VK+  +IG G     G  HAEV AL 
Sbjct: 6   TFTEHDEMYMARAIELAKKGRFTTTPNPNVGCVLVKNNQIIGEGFHQLAGQGHAEVNALA 65

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG+ A+GATAYVTLEPCSHYGR+PPCA+ +   G+ +V+  + D + +V+G+GL+ LS 
Sbjct: 66  VAGKNAQGATAYVTLEPCSHYGRTPPCAEGLKAAGVVKVIAAMVDTNPQVAGKGLKILSD 125

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +   ++ES+ +     +  R  +   ++  K+A S D    +    S  IT   ++
Sbjct: 126 AGIDVAYGLLESQARALNVGFFKRMEQGLPYVICKMAASIDGKTALKNGQSKWITSPAAR 185

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--------HSPMRIILDPHFKLSL 232
             V L RA+S AIL G  TVL DD +L  RL+ L            P+R+I+D   +L+ 
Sbjct: 186 QDVQLYRAKSCAILTGADTVLVDDAKLNVRLSELPCTPPTDLPLRQPVRVIIDSQNRLTP 245

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLL 291
           D  +    + + VII T   D  L      K+I +   + + DL+ +L  L      ++ 
Sbjct: 246 DLALF--EIQSDVIIFTTKVDKSLQWPHFVKHIEVSESNGKVDLQAVLEKLGQLQFNNVW 303

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYF 346
           +E GA +A       LVD  + Y +  ++G     S +    L      V          
Sbjct: 304 LEAGATLAGKMTELNLVDEFVFYLAPKLMGHD-AKSLVNFPELTSMQNTVDLTFNECARI 362

Query: 347 GSDVCL 352
           G D+ +
Sbjct: 363 GDDLRI 368


>gi|251777591|ref|ZP_04820511.1| riboflavin biosynthesis protein RibD [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243081906|gb|EES47796.1| riboflavin biosynthesis protein RibD [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 363

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 115/361 (31%), Positives = 184/361 (50%), Gaps = 13/361 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            ++M  AL  ++   G  + NP V  LIVKD  +IG G     G  HAEV A+  A +  
Sbjct: 3   EKYMELALELAKKGEGKVNPNPLVGALIVKDNEIIGAGYHEKYGESHAEVNAINNATKSL 62

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            G+T YVTLEPCSHYG++PPC   IIE  I++V++ + DP+  VSG+ ++ L    I V 
Sbjct: 63  DGSTIYVTLEPCSHYGKTPPCVDLIIEKKIKKVIIGMLDPNPMVSGKSIKKLKDNDIEVI 122

Query: 128 RMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +E E  K    +++         + LK A+S D  I  +   S  IT   S+   HLL
Sbjct: 123 VGVEEEKCKKINESFIKYITSNLPFVILKSAISLDGKIATSIGESKWITSEESRRDGHLL 182

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R +  AI+VGI T++ DDPELTCR+      +P+R+I+D + ++ L+SK++  +    ++
Sbjct: 183 RNKLSAIMVGINTIIEDDPELTCRI--KNGKNPIRVIVDSNLRIPLNSKVLNNSDKLTIV 240

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             T+  D +       K + +I  + +    DLK+L+  L    + S+L+EGG  +  S 
Sbjct: 241 ATTKYADKLKKQELINKGVRVIEINDKNKKVDLKELMRCLGTLKIDSILIEGGGTLNFSA 300

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE-YIG 356
           +   +VD +  Y +  ++G     S +      K         +  +    D+ +E YI 
Sbjct: 301 LEENIVDKVRFYIAPKILGGERSKSSIGGEGFFKLSDAVKLKELTYEKLSEDIVIEGYIN 360

Query: 357 K 357
           K
Sbjct: 361 K 361


>gi|325201538|gb|ADY96992.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
           M01-240149]
          Length = 369

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 129/365 (35%), Positives = 187/365 (51%), Gaps = 11/365 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL+ +      TS NP V C+I +   ++G+G     G PHAEV AL +
Sbjct: 2   FSETDISMMQNALKLAALGRFSTSPNPRVGCVIAQGSQIVGQGFHVKAGEPHAEVHALRQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   
Sbjct: 62  AGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++ 
Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V +LRA+S A+L GIGTVLAD+P L  R        P RI+LD   +L LDS ++    
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPLDSHLLTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGA 296
               I   E D+  L       +I I+          DL +L+ +L   G   ++VE GA
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHRLMRLLADEGYGEVMVEAGA 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +  +F+   L D I+LYRS  ++G G     +P           +  V  +  G DV  
Sbjct: 301 KLTSAFLAEDLADEIVLYRSPKILGSGKDLFSLPENRAALSAPPLWTPVSTEILGHDVKT 360

Query: 353 EYIGK 357
            +   
Sbjct: 361 VFRKN 365


>gi|212634188|ref|YP_002310713.1| riboflavin biosynthesis protein RibD [Shewanella piezotolerans WP3]
 gi|212555672|gb|ACJ28126.1| Riboflavin biosynthesis protein RibD [Shewanella piezotolerans WP3]
          Length = 373

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 132/375 (35%), Positives = 198/375 (52%), Gaps = 22/375 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S+ D + MS A+  ++  +  T  NP V  +IVKD +++G G     G PHAEV AL  
Sbjct: 2   WSTEDNQMMSLAIELAQKGLYTTRPNPCVGSVIVKDSVIVGEGYHIRAGGPHAEVYALNM 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG +A+GATAYVTLEPCSHYGR+PPCA+ +IE G+ RVVV V DP+ +VSGRG+  L   
Sbjct: 62  AGNDAKGATAYVTLEPCSHYGRTPPCAKALIEAGVSRVVVAVTDPNPQVSGRGIAMLQDA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++    K     +L R  +    +T+K+A S D    ++   S  ITG  ++ 
Sbjct: 122 GIQVDVGLLTDAAKQVNLGFLKRMQQGLPWVTVKLAASLDGKTALSNGESKWITGPEARR 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  +RA+  A++ G+ TVLAD+P L  R + L          + H P+R+ILD   +L 
Sbjct: 182 DVQRIRARHCALITGVETVLADNPSLNVRHSELGSLSNEIAPAEVHQPLRVILDSQARLD 241

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGV 287
            +  I   ++ +PV++V+  D P    +    +++       D    L+ LLT+L     
Sbjct: 242 AELAIF--SVTSPVLLVSTRDYPESVKSAWPAHVSHQVLPATDNRVELQALLTLLGKT-C 298

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRR 343
            S+LVE GA +A +F+ S  VD IILY++  ++G GG        + +     N   +  
Sbjct: 299 NSVLVEAGATLAGAFVASHCVDEIILYQAMKILGAGGRDLLALPDFEKMSEIPNIDVIDE 358

Query: 344 DYFGSDVCLEYIGKN 358
              G D  L     N
Sbjct: 359 RKVGKDTRLTLRMSN 373


>gi|95929567|ref|ZP_01312309.1| riboflavin biosynthesis protein RibD [Desulfuromonas acetoxidans
           DSM 684]
 gi|95134264|gb|EAT15921.1| riboflavin biosynthesis protein RibD [Desulfuromonas acetoxidans
           DSM 684]
          Length = 364

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 126/356 (35%), Positives = 190/356 (53%), Gaps = 14/356 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  +R  +G T+ NP V  +IV+DG V+GRG     G PHAEV AL +A ++ARGA
Sbjct: 1   MQIALDLARKALGRTTPNPPVGAVIVRDGQVVGRGFHPKAGEPHAEVFALRDAADQARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
            AYVTLEPCSH+GR+PPC + +I  G+ RV V + DP+ +VSG+G++ L   G+ +   +
Sbjct: 61  DAYVTLEPCSHHGRTPPCCEALIAAGVSRVFVGLIDPNPQVSGQGVERLRAAGVEVEVGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E++ +  +  ++   +  R    LK A++ D         S  IT   S+  VH LR Q
Sbjct: 121 LETQCRRLIAPFIKHMISGRPLFILKSALTLDGRTATRTGHSQWITSARSREHVHRLRDQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DAI+VG GT L D+P LT RL     H P+RI++D   +L   S +I     +P  +VT
Sbjct: 181 VDAIMVGSGTALRDNPRLTTRLT-PPGHDPIRIVVDSRLQLPETSHLINHQSASPTWVVT 239

Query: 250 -ENDDPVLALAFR-KKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
               DP    A +    + ++          DL  L  +L  R + S+LVEGG+ +  S 
Sbjct: 240 VAQADPAKIKALQVHAGVEVMTVAATSAGQVDLPALADMLGQRDIQSVLVEGGSVLNQSL 299

Query: 303 INSRLVDSIILYRSQIVIGE-GGIPSPLEEGYLEKNFMCVRRDY----FGSDVCLE 353
            ++ L+D +++Y +  ++G   G      +G    +     RD+     G DV LE
Sbjct: 300 FSAGLIDRVMVYMAPKLLGGNDGFGLFTGQGVDHLDDALQLRDFRVTCLGDDVLLE 355


>gi|291613122|ref|YP_003523279.1| riboflavin biosynthesis protein RibD [Sideroxydans lithotrophicus
           ES-1]
 gi|291583234|gb|ADE10892.1| riboflavin biosynthesis protein RibD [Sideroxydans lithotrophicus
           ES-1]
          Length = 363

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 120/357 (33%), Positives = 189/357 (52%), Gaps = 9/357 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ D+++M+ ALR +   +  TS NP V C++VK   V+G G     G PHAEV AL  
Sbjct: 1   MNAADSQWMALALRLAEQGLYTTSPNPRVGCVLVKQHEVVGTGWHERAGEPHAEVHALRA 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ A+GATAYVTLEPCSH+GR+PPCA  ++  GI+RVV  + DP+ +V+G+G+  L   
Sbjct: 61  AGKSAKGATAYVTLEPCSHHGRTPPCADALVAAGIKRVVAAMQDPNPQVAGQGIARLRAA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   +ME   +     +++R       +  K+A S D    +A   S  ITG  ++ 
Sbjct: 121 GIGVECGLMEVAARELNIGFVSRMTRGIPWVRSKVAASLDGRTALANGSSKWITGEAARC 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V   RA+S A+L GIGTVLADDP+L  R        P+R++LD   ++S  ++I++   
Sbjct: 181 DVQHWRARSCAVLTGIGTVLADDPQLNVREMPA-ARQPLRVVLDSELRISSQAEILRNGH 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
            A V      D  + AL+ R   +  +       DL  ++  L  RG+  +LVE G  + 
Sbjct: 240 -ALVYTACTVDAKLKALSARGAEVVTLAGLDGKVDLFAVMRDLARRGINEVLVEAGRELN 298

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCL 352
            + + + LVD ++LY +  ++G+          L +               GSD+ +
Sbjct: 299 GALLKAGLVDEMVLYLAPQLLGDAARGLAELGELTQLQQRVPLQWQDVRQVGSDLRI 355


>gi|295696432|ref|YP_003589670.1| riboflavin biosynthesis protein RibD [Bacillus tusciae DSM 2912]
 gi|295412034|gb|ADG06526.1| riboflavin biosynthesis protein RibD [Bacillus tusciae DSM 2912]
          Length = 371

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 127/366 (34%), Positives = 201/366 (54%), Gaps = 13/366 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  +IVKDG ++G+G     G PHAEV AL  AGE+
Sbjct: 3   DEDWMRWALQLAASARGQTSPNPMVGAVIVKDGELVGQGAHLKAGGPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGAT YVTLEPC H+GR+PPC++ +IE G+ RVVV + DP+  V+G G++ L Q G+ +
Sbjct: 63  ARGATVYVTLEPCDHHGRTPPCSRALIEHGVARVVVAMVDPNPLVAGGGIRRLRQAGVKV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E + +     ++ R    R  +  KIA++ D  I      S  ITG  ++ +VH 
Sbjct: 123 EVGLLEKDARALNRGFIQRMTRGRPWVIAKIAMTLDAQIATRTGESRWITGEKAREKVHE 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAP 244
           LR++ DA++ G+GTV+ADDP LT R  G      P+R++LD   ++  D++I+ T     
Sbjct: 183 LRSRVDAVVTGVGTVIADDPRLTARPPGGGLPRQPLRVVLDSRLRIPADAQILSTVSAPT 242

Query: 245 VIIVTENDDPVLALA-FRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAV 298
           V+       P   +A    + +++   D       DL+++   L   GV + LVE G  +
Sbjct: 243 VVCAGRGLAPAERVAELAARGVDVWLIDPDSQGGLDLRQVFGRLGEAGVNTALVEAGGRL 302

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
             S   S LVD ++ + +  ++   GIP+   EG +E+     + +  G    +E +G++
Sbjct: 303 QGSVFRSGLVDEVVFFLAPKLLMGSGIPALAGEG-VERLAQSAQLEITG----VETVGED 357

Query: 359 LCLQEL 364
           L +  L
Sbjct: 358 LKVTAL 363


>gi|119472108|ref|ZP_01614339.1| Riboflavin biosynthesis protein [Alteromonadales bacterium TW-7]
 gi|119445128|gb|EAW26421.1| Riboflavin biosynthesis protein [Alteromonadales bacterium TW-7]
          Length = 383

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 117/365 (32%), Positives = 183/365 (50%), Gaps = 18/365 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            +  D  +M+ A+  ++     T+ NP+V C++VKD  +IG G     G  HAEV AL  
Sbjct: 7   FTEHDKLYMARAIELAKKGRFTTTPNPNVGCVLVKDNQIIGEGFHQLAGQGHAEVNALAV 66

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE+A+GATAYVTLEPCSHYGR+PPCA+ +   GI++V+  + D + +V+G+GL+ LS  
Sbjct: 67  AGEKAQGATAYVTLEPCSHYGRTPPCAEGLKAAGIKKVIAAMVDTNPQVAGKGLKILSDA 126

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E E +     +  R  +   ++T K+A S D    +    S  ITG  ++ 
Sbjct: 127 GIEVAHGLLEQEARALNFGFFKRMEQGLPYVTCKLAASIDGKTALKNGKSKWITGPDARK 186

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--------HSPMRIILDPHFKLSLD 233
            V L RAQS AIL G  TVL D+ +L  R + L            P+R+I+D   +L+ D
Sbjct: 187 DVQLYRAQSCAILTGADTVLVDNAKLNVRPSELPYSLPTNLPLRQPVRVIIDSQNRLTPD 246

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292
             + K  +  PVII T   D  +      K+I +     + DL  +L  L      ++ +
Sbjct: 247 LALFK--IAHPVIIFTTKVDNSMQWPHFVKHIAVREQQGKVDLTDVLQTLAKHQFNNIWL 304

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FG 347
           E GA +A       L+D  + Y +  ++G     S +    L      +   +      G
Sbjct: 305 EAGATLAGKMTELDLIDEYVFYIAPKLMGYD-AKSLVNFPELTSMQDTIDLSFNECVRIG 363

Query: 348 SDVCL 352
            D+ +
Sbjct: 364 DDLRI 368


>gi|259909281|ref|YP_002649637.1| Riboflavin biosynthesis protein RibD [Erwinia pyrifoliae Ep1/96]
 gi|224964903|emb|CAX56426.1| Riboflavin biosynthesis protein RibD [Erwinia pyrifoliae Ep1/96]
 gi|283479336|emb|CAY75252.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Erwinia pyrifoliae DSM 12163]
          Length = 367

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 124/366 (33%), Positives = 185/366 (50%), Gaps = 18/366 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL  +R     T+ NP+V C++V+DG ++G G     G PHAEV AL  AGE+
Sbjct: 3   DEIYMARALELARRGRFTTTPNPNVGCVLVRDGQIVGEGYHMLAGEPHAEVHALRMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           + GATAYVTLEPCSH+GR+PPC + +I  GI+RVV  + DP+ +V+GRGL  L Q GI +
Sbjct: 63  SLGATAYVTLEPCSHHGRTPPCCEALIAAGIKRVVTAMQDPNPQVAGRGLYRLQQAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M  E +     +L R       + LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMQEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPEARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLAD+P LT R + L               P+R+I+D   +++ + 
Sbjct: 183 LRAQSSAILSTSATVLADNPALTVRHDELDSASLADYPVDLLRQPVRVIVDGQNRVTPEY 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           +++  A      +   + D         + I  +Y +  DL  LL +L  + + S+ VE 
Sbjct: 243 RLV--AQPGETWLARTSGDRQQWPENVSQLIVPLYQNRLDLVSLLMLLGKKQINSVWVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           GA  A + + + +VD +I+Y +  ++G+ G        LE       F        G D+
Sbjct: 301 GAQFAGALLQAGVVDELIVYLAPKLLGDAGRGLCQLPGLETLAAAPAFTFSDIRQVGPDI 360

Query: 351 CLEYIG 356
            L    
Sbjct: 361 RLTLTP 366


>gi|126738756|ref|ZP_01754452.1| riboflavin biosynthesis protein RibD [Roseobacter sp. SK209-2-6]
 gi|126719937|gb|EBA16644.1| riboflavin biosynthesis protein RibD [Roseobacter sp. SK209-2-6]
          Length = 370

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 137/360 (38%), Positives = 193/360 (53%), Gaps = 11/360 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DAR+M+ AL   R   G    NP+V C+IVK+G ++GRG T  GG PHAE QAL +AGE 
Sbjct: 10  DARYMALALSLGRRGQGKCWPNPAVGCVIVKEGRIVGRGWTQPGGRPHAEPQALAQAGEA 69

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSH+G +PPCAQ +I+ G+  VV  ++D D RVSG+G + L   GI +
Sbjct: 70  ARGATAYVTLEPCSHFGETPPCAQALIDAGVSHVVAAIEDSDPRVSGQGFEMLRMAGITV 129

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++  E  +    +  +  + R  +TLK+A S D  I      S  ITG  ++ +VH 
Sbjct: 130 RTGVLAEEAGLDHAGFFYKTEQGRPWVTLKLASSFDGRIATGSGQSKWITGPEARRRVHA 189

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +RA  DA++VG GT  ADDP LT R  G+ E  P+R+++  H  L L  ++ +TA   PV
Sbjct: 190 MRACHDAVMVGGGTARADDPSLTVRDLGVAE-QPVRVVISRHLDLPLMGQLARTAKEVPV 248

Query: 246 IIVT-ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300
            +      D     A+      ++ C       D   +L  L   G+T +  EGG+A+A 
Sbjct: 249 WLCHGAGADVERIQAWEGLGARLLPCAAHGVQLDPNDILQQLGAAGLTRVFCEGGSALAA 308

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
           S +   LVD +I + + + IG  G+PS     L        F  V     G DV   +  
Sbjct: 309 SLLAFDLVDELIGFTAGLGIGAEGLPSIGALGLTGLERAGRFDLVETTPVGGDVLHRWHR 368


>gi|219849511|ref|YP_002463944.1| riboflavin biosynthesis protein RibD [Chloroflexus aggregans DSM
           9485]
 gi|219543770|gb|ACL25508.1| riboflavin biosynthesis protein RibD [Chloroflexus aggregans DSM
           9485]
          Length = 409

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 121/341 (35%), Positives = 174/341 (51%), Gaps = 10/341 (2%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M        +M  AL  ++   G TS NP V  +IVKDG ++G G     G PHAEV+AL
Sbjct: 1   MCQHPDPETYMRRALVLAQQAAGRTSPNPMVGAVIVKDGRIVGEGYHRRAGEPHAEVEAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE ARGAT YVTLEPC+H GR+PPC   II  GI  V   + DP+  VSG+G   L+
Sbjct: 61  RVAGEAARGATMYVTLEPCAHVGRTPPCTDAIIAAGITEVYYAIADPNPLVSGKGHAQLA 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI +   + E+E       +       R  +T K A+S D  I      S  I+   +
Sbjct: 121 AAGIRVQCGVCEAEAFELNRPFFKHITTGRPFVTAKFAMSLDGKIATVIGQSRWISNAAA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE---HSPMRIILDPHFKLSLDSKI 236
           + +VH LR ++DA+LVG GTV+ADDP LT RL  L       P+RI+ D   ++ L +K+
Sbjct: 181 RRRVHHLRNRTDAVLVGAGTVIADDPSLTTRLPDLSPDSIRHPLRIVADSRGRVPLSAKV 240

Query: 237 IKTALLAPVIIVTENDDPV-LALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSL 290
               L    ++ T    P     A  ++ +++      D     L  L   L  RG+ S+
Sbjct: 241 FDPDLPGQTVVATTELIPADHRRALVERGVDVWLLPASDDGRVRLSALFDELGRRGMLSV 300

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           LVEGG+ +  +    RL+D + ++ + ++IG    P P+  
Sbjct: 301 LVEGGSELLGACFCERLIDRVWVFMAPLIIGGQHAPGPVGG 341


>gi|296314604|ref|ZP_06864545.1| riboflavin biosynthesis protein RibD [Neisseria polysaccharea ATCC
           43768]
 gi|296838643|gb|EFH22581.1| riboflavin biosynthesis protein RibD [Neisseria polysaccharea ATCC
           43768]
          Length = 369

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 129/365 (35%), Positives = 186/365 (50%), Gaps = 11/365 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +      TS NP V C+I + G V+G+G     G PHAEV AL +
Sbjct: 2   FSETDISMMQNALDLAALGRFSTSPNPRVGCVIAQGGQVVGQGFHIKAGEPHAEVHALRQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   
Sbjct: 62  AGKMAKGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI ++  ++ESE K     +L+R   +R  + LK AVS D    ++   S  ITG  ++ 
Sbjct: 122 GIKMECGLLESEAKELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V +LRA+S A+L GIGTVLAD+P L  R        P RI+LD   +L   S ++    
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPYSHLVTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGA 296
               I   E D+  L       +I I+          DL  L+ +L   G   ++VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +  +F+   L D I+LYRS  ++G G     +P           +  V  +  G D+  
Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGGGKDLFSLPENRAALSAPPLWTPVSSEILGHDIKT 360

Query: 353 EYIGK 357
            +   
Sbjct: 361 VFRKN 365


>gi|119774153|ref|YP_926893.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase.,
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Shewanella amazonensis SB2B]
 gi|119766653|gb|ABL99223.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Shewanella amazonensis SB2B]
          Length = 378

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 124/367 (33%), Positives = 191/367 (52%), Gaps = 23/367 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALE 61
            S+ D   M+ A+  ++     T  NP+V C+IV D G ++G G     G PHAEV AL+
Sbjct: 7   FSALDRAMMARAIMLAKRGQYTTRPNPNVGCVIVNDAGDIVGEGWHIRAGGPHAEVHALK 66

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            A ++ARGATAYVTLEPCSHYGR+PPCA+ +I+ G++RVVV + DP+ +V+GRG++ L  
Sbjct: 67  AAADKARGATAYVTLEPCSHYGRTPPCAKALIDNGLKRVVVAMTDPNPQVAGRGIKLLQD 126

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +   +ME+E +     +L+R   KR  +T+K+  S D    ++   S  ITG  ++
Sbjct: 127 AGIEVAHGLMEAEARALNPGFLSRMERKRPFVTVKVGASLDGKTALSSGESKWITGPEAR 186

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKL 230
             V  LRA+S A++ GI TVL DDP L  R   L          +   P+R++LD   ++
Sbjct: 187 RDVQRLRAKSCALITGIDTVLLDDPSLNVRHGELGSLGASLTEPELIQPIRVVLDSQRRM 246

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRG 286
           S D+K+    +  P+++V+        L      +  +         DL  LL+ L    
Sbjct: 247 STDAKLF--GITGPILLVSAEPYDEKFLHSLPDFVTCLILPGSHGRIDLAALLSHLGE-N 303

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVR 342
              +LVE G  +A +FI + L D ++LY++  ++G  G        Y           + 
Sbjct: 304 CNRVLVEAGGTLAGAFIAAGLCDELVLYQAPKLLGSHGRDMLQLPDYQTMAEVPGLKLID 363

Query: 343 RDYFGSD 349
               G D
Sbjct: 364 ERKVGQD 370


>gi|85860188|ref|YP_462390.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Syntrophus aciditrophicus SB]
 gi|85723279|gb|ABC78222.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Syntrophus aciditrophicus SB]
          Length = 380

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 115/324 (35%), Positives = 175/324 (54%), Gaps = 9/324 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +R   G  S NP V  +IVK+  +IG G     G  HAE+ AL  A E 
Sbjct: 3   DEFYMKRALQLARKGEGWVSPNPMVGSVIVKNDRIIGEGYHRKFGEAHAEINALNGAKES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A G+T YV+LEPCSHYG++PPC + ++ C  +RVV+   DP+  V+GRG+  L + GI +
Sbjct: 63  AEGSTIYVSLEPCSHYGKTPPCVERLVACRPKRVVIGTTDPNPLVAGRGIGILKRNGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E   +    ++L     +   +TLK A + D  I  +   S  I+   S+   H 
Sbjct: 123 TVGVLEEVCREINESFLKFIQFRIPFVTLKYAQTLDGRIATSTGHSRWISSPPSRRFAHR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR   DAILVGIGTVL+DDPELT RL  ++  +P+RI+LD   ++ L ++I++    A  
Sbjct: 183 LRHAHDAILVGIGTVLSDDPELTVRL--VRGKNPLRIVLDSRLRIPLTARILQEQDQAKT 240

Query: 246 I-IVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVA 299
           + + T++ D         + I  +          DL +LL  L  RG+ S+LVEGG+ + 
Sbjct: 241 LMVTTDHADRKKLSQLNDRGIETLILPVESSGRIDLNRLLRELGSRGIASVLVEGGSGIL 300

Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323
            + +   L D +I   +  + G G
Sbjct: 301 TALMAQDLADRLIAIIAPKISGRG 324


>gi|326791794|ref|YP_004309615.1| riboflavin biosynthesis protein RibD [Clostridium lentocellum DSM
           5427]
 gi|326542558|gb|ADZ84417.1| riboflavin biosynthesis protein RibD [Clostridium lentocellum DSM
           5427]
          Length = 363

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 117/360 (32%), Positives = 188/360 (52%), Gaps = 19/360 (5%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M  AL  ++   G  S NP V  ++VK+G +IG G     G  HAEV A++ A +++
Sbjct: 3   ENYMRYALNLAKQGGGKVSPNPLVGAVLVKEGRIIGEGYHEVYGANHAEVNAIKSASQKS 62

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
            GAT YVTLEPC+HYG++PPC + II+  I RVVV + DP+  V+G G++ L   GI ++
Sbjct: 63  EGATLYVTLEPCNHYGKTPPCTETIIQNKIMRVVVGMRDPNPLVAGSGIKRLEDAGIEVI 122

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++E E +     ++    ++   + LK A++ D  I      S  ITG  S+  VH L
Sbjct: 123 VGILEEECRKLNEIFIKYITKQEPFVLLKAAMTLDGKIATVAGQSKWITGEASREMVHQL 182

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R     ILVGIGTV+ DDP LTCRL  +   +P+ I++D   ++ + SKII     + VI
Sbjct: 183 RNAYSGILVGIGTVIKDDPLLTCRL--VSGRNPVIIVVDSTLRIPMSSKII--GGTSKVI 238

Query: 247 IVT----ENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAV 298
           I      E           +  + +++ +      +LK+L+  L   G+ S+L+EGGA V
Sbjct: 239 IAAVKEIEEMAVDKVKKLEELGVKVLFIEAYKHRVNLKELMIQLGKLGIDSILIEGGAEV 298

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLE 353
             S + + +VD +  Y +  ++G     +P+    +      ++ +       G D+ LE
Sbjct: 299 NASALEAGIVDKVQFYIAPQIVGGQ-AKTPVAGRGIADLEESIKVENLQIKRIGEDILLE 357


>gi|188589601|ref|YP_001920640.1| riboflavin biosynthesis protein RibD [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188499882|gb|ACD53018.1| riboflavin biosynthesis protein RibD [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 366

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 115/361 (31%), Positives = 183/361 (50%), Gaps = 13/361 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            ++M  AL  ++   G  + NP V  LIVKD  +IG G     G  HAEV A+  A +  
Sbjct: 6   EKYMELALELAKKGEGKVNPNPLVGALIVKDNEIIGSGYHEKYGEAHAEVNAINNATKSL 65

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            G+T YVTLEPCSHYG++PPC   IIE  I++V++ + DP+  VSGR ++ L    I V 
Sbjct: 66  DGSTIYVTLEPCSHYGKTPPCVDLIIEKKIKKVIIGMLDPNPMVSGRSIKKLKDNDIEVI 125

Query: 128 RMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +E E  K    +++         + LK A+S D  I  +   S  IT   S+   HLL
Sbjct: 126 VGVEEEKCKKINESFIKYITSNLPFVILKSAISLDGKIATSIGESKWITSEESRRDGHLL 185

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R +  AI+VGI T++ D+PELTCR+      +P+R+I+D + ++ L SK++  +    ++
Sbjct: 186 RNKLSAIMVGINTIIEDNPELTCRIE--NGKNPIRVIVDSNLRIPLKSKVVNNSDKLTIV 243

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             T+  D +       K + +I  + +    DLK+L+  L    + S+L+EGG  +  S 
Sbjct: 244 ATTKYADKLKKQELINKGVRVIEINDKNKKVDLKELMRCLGTLKIDSILIEGGGTLNFSA 303

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE-YIG 356
           +   +VD +  Y +  ++G     S +      K         +  +    D+ +E YI 
Sbjct: 304 LEENIVDKVRFYIAPKILGGERSKSSIGGEGFFKLSDAVKLKELTYEKLSEDIVIEGYIN 363

Query: 357 K 357
           K
Sbjct: 364 K 364


>gi|322834072|ref|YP_004214099.1| riboflavin biosynthesis protein RibD [Rahnella sp. Y9602]
 gi|321169273|gb|ADW74972.1| riboflavin biosynthesis protein RibD [Rahnella sp. Y9602]
          Length = 378

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 118/366 (32%), Positives = 180/366 (49%), Gaps = 18/366 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           +  D  +M+ A   +R     T+ NP+V C+IV +G ++G G     G PHAEV AL  A
Sbjct: 10  NPTDEHYMARAFELARRGRFTTTPNPNVGCVIVLNGEIVGEGYHLRAGEPHAEVHALRMA 69

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE+A+GATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q G
Sbjct: 70  GEKAKGATAYVTLEPCSHHGRTPPCADALLAAGVARVVAAMQDPNPEVAGRGLYRLKQNG 129

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + +   +M  + +     +L R      ++ LK+  S D    MA   S  IT   ++  
Sbjct: 130 VDVSHGLMHPQAEAVNLGFLKRMRTGFPYVQLKMGASLDGRTAMASGESQWITSAAARAD 189

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLS 231
           V   RA+S AIL    TVLAD+P L  R                   P+R+ILD   +++
Sbjct: 190 VQRFRAESSAILSTSATVLADNPSLNVRWSELGSEVQAIYPEENLRQPLRVILDSQNRVT 249

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
              +++   L   V +     D  +     ++       +  DL  L+  L  R + S+ 
Sbjct: 250 PQHQVVN--LPGEVWLARLEADTQVWPGSVEQWRVAGRDNRIDLVLLMMQLAKRQINSIW 307

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFG 347
           VE GA +A + + + LVD +I+Y +  ++G+ G        L+       F+       G
Sbjct: 308 VEAGAQLAGALLQAGLVDELIVYMAPKLLGDNGRALCELPGLQHLADAPEFVFNDIRQVG 367

Query: 348 SDVCLE 353
           SD+ L 
Sbjct: 368 SDLRLR 373


>gi|146308871|ref|YP_001189336.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Pseudomonas mendocina ymp]
 gi|145577072|gb|ABP86604.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas
           mendocina ymp]
          Length = 371

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 128/369 (34%), Positives = 183/369 (49%), Gaps = 14/369 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S  D  FM+ ALR +R  +  T  NP V C+IV+DG ++G G  A  G PHAEV AL +
Sbjct: 1   MSERDHLFMARALRLARKGLYSTHPNPRVGCVIVRDGEIVGEGWHARAGEPHAEVHALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+ +V+GRGL  L+  
Sbjct: 61  AGERARGATAYVTLEPCSHHGRTPPCADALVAAGVGRVVAAMQDPNPQVAGRGLLRLANA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI ++  ++E+E +     ++ R       + +K A+S D    MA   S  ITG  ++ 
Sbjct: 121 GIEVLSGVLEAEARALNVGFIKRMESGLPFVRVKSAMSLDGRTAMASGESQWITGPAARA 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
           +V  LRAQS  +L G  TVLADD  LT R + L              P+R+++D   ++ 
Sbjct: 181 EVQRLRAQSSVVLSGADTVLADDARLTVRPDELGLGAEATFMAASRPPLRVLIDGRLRVP 240

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
           L     +                       +           DL+KLL  L GRGV  +L
Sbjct: 241 LSKAFFQVGPALVATCAAAAARDRYLADDHELLAVPGSNGHVDLRKLLQELAGRGVNEVL 300

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGS 348
           VE G  +A +F  + LVD   ++ +  ++G    P    PL           V     G 
Sbjct: 301 VEAGPRLAGAFARAGLVDEYRIFVAPKLLGSSARPLFELPLNRMAEAPELQIVDIRAVGD 360

Query: 349 DVCLEYIGK 357
           D  +  + K
Sbjct: 361 DWQITAVPK 369


>gi|332992366|gb|AEF02421.1| riboflavin biosynthesis protein RibD [Alteromonas sp. SN2]
          Length = 404

 Score =  349 bits (895), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 191/366 (52%), Gaps = 20/366 (5%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCPHAEVQALEEA 63
             D  +M+ A+R ++     TS NP V C+IV +    IG+G     G PHAE+ AL EA
Sbjct: 36  EIDYYWMAKAIRLAQKGQFTTSPNPRVGCVIVNNNNDSIGQGFHVQAGTPHAEIHALREA 95

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G++A+GATAYVTLEPCSHYGR+PPCA+ +I+  + RVV+ + DP+  VSG G++ L   G
Sbjct: 96  GKKAKGATAYVTLEPCSHYGRTPPCAEALIKAQVSRVVIAMTDPNPNVSGNGIRMLQDAG 155

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +   +M +E       ++ R +  + ++ +K+ +S D  I +    S  ITG  ++  
Sbjct: 156 IEVSSDIMSAESAALNPGFIKRMLTGKPYVRVKLGISVDGKIALQNGNSQWITGPEARRD 215

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--------EHSPMRIILDPHFKLSLDS 234
           V   RAQS A+L G GTV AD+P L  R +  +           P+RII++    LS D 
Sbjct: 216 VQHYRAQSCAVLTGSGTVKADNPSLLVRPDEAKFAHYPLEAIRQPVRIIVNSADDLSRDY 275

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVE 293
           + +      P  +V+  +    A    ++++ +   + + D+ KL+  L       + VE
Sbjct: 276 RCMNDG--HPTFVVSTQNS---ADTDNRQHLTVDAMNGKVDISKLMLQLGDMQFNEVWVE 330

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSD 349
            G  +A + + +  VD +I Y++  ++G+ G+       + E N       +     G+D
Sbjct: 331 AGPGLAGALLIAGEVDELICYQAPKLLGDKGVSMVSLPTFTELNQAIELSLIESRQIGND 390

Query: 350 VCLEYI 355
           + L Y+
Sbjct: 391 IKLRYL 396


>gi|120553775|ref|YP_958126.1| riboflavin biosynthesis protein RibD [Marinobacter aquaeolei VT8]
 gi|120323624|gb|ABM17939.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Marinobacter aquaeolei VT8]
          Length = 363

 Score =  349 bits (895), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 128/359 (35%), Positives = 185/359 (51%), Gaps = 17/359 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
            M+ A++ +      T  NP V C+I K  +++G G     G  HAEV+AL +AG EARG
Sbjct: 1   MMARAVQLAWRGRYSTHPNPRVGCVIAKGDLIVGEGWHERAGEAHAEVRALSQAGHEARG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           ATAYVTLEPCSHYGR+PPCA+ +I+ G+  V     DP+  VSGRGL  L + GI + + 
Sbjct: 61  ATAYVTLEPCSHYGRTPPCARALIDAGVAHVFAATKDPNPSVSGRGLDMLREAGIRVTEG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +M  E       ++ R    R  + LK+A S D    MA   S  ITG  ++  V  LRA
Sbjct: 121 VMADEAARLNPGFMKRMNTGRPWVRLKMAASLDGRTAMASGESQWITGPEARADVQRLRA 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQE--------HSPMRIILDPHFKLSLDSKIIKTA 240
            SDAIL G+GTVLADDP LT R + + +          P+R+I D   +    ++I++  
Sbjct: 181 ISDAILTGVGTVLADDPSLTVRRDEMGDIGDATDPSRQPLRVIADRDARTPATARILQGG 240

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGA 296
            +  V   +       A       +++       +  D+ +LL  L   G+  LLVE G 
Sbjct: 241 NVQ-VFCASSTLASGPAQDLAALGVSLTGVAWKDNGVDVAELLDALGELGINELLVEAGP 299

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCL 352
            +A +FI   LVD + LY++ + +G  G P+   PLE    +  +  + R   G D  L
Sbjct: 300 TLAGTFIGENLVDELWLYQAPVFLGSTGRPTAHLPLETMADKVQWKVLDRRQVGEDQRL 358


>gi|251792829|ref|YP_003007555.1| riboflavin biosynthesis protein RibD [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534222|gb|ACS97468.1| riboflavin biosynthesis protein RibD [Aggregatibacter aphrophilus
           NJ8700]
          Length = 374

 Score =  349 bits (895), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 129/372 (34%), Positives = 191/372 (51%), Gaps = 19/372 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  DA FM  AL  ++      + NP+V C++VK+G +IG+G  A  G PHAEV AL E
Sbjct: 5   FSLKDAEFMQLALDLAKQGEFTATPNPAVGCVLVKNGQIIGKGFHAKAGEPHAEVMALRE 64

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPC+HYGR+PPCA+ +++ G+R V+  + DP+  V+G+GL  L+  
Sbjct: 65  AGENARGATAYVTLEPCAHYGRTPPCAKGLVDAGVRIVIAAMCDPNPLVAGKGLGILADA 124

Query: 123 GIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI     +  E        +L R    R  + LK+A+S D    MA   S  ITG  ++ 
Sbjct: 125 GIESAVGLLKENAEELNKGFLKRMRTGRPFVQLKLAMSIDGKTAMANGESKWITGAQARA 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V   RA++ AIL    TVLAD+P L  R   L +             P+R+ILD   K+
Sbjct: 185 DVQQYRAKASAILSTSQTVLADNPSLNVRWAELPQEVQSRYAEQHLRQPVRVILDSAHKV 244

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTS 289
             D  +  T   +PV +  ++   +       + + +I       L+ L+T L  R + +
Sbjct: 245 RSDFNLFLTD--SPVWLAGKDKFQLNGFPASTEYLQLIPNQGESHLQTLMTELGRRQINT 302

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDY 345
           L VE GA +A + I   LVD +I+Y +  ++G+          L +      +     + 
Sbjct: 303 LWVEAGATLAGALIAENLVDELIIYMAPKLLGDQARDLCHLPNLTKLADAPLWELQLCEP 362

Query: 346 FGSDVCLEYIGK 357
            G+D+ L YI K
Sbjct: 363 VGNDLKLIYIRK 374


>gi|91776267|ref|YP_546023.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Methylobacillus flagellatus KT]
 gi|91710254|gb|ABE50182.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Methylobacillus flagellatus KT]
          Length = 377

 Score =  348 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 134/360 (37%), Positives = 188/360 (52%), Gaps = 16/360 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S+ D  +M+ ALR +   +  TS NP V C+IVKDG V+GRG     G PHAEV AL  
Sbjct: 12  FSASDHHYMNLALREAARGLYSTSPNPRVGCVIVKDGKVVGRGAHLRAGEPHAEVHALRM 71

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG +A GA AYVTLEPCSH+GR+PPCA  +++ G+RRVV  + DP+  VSG GL+ LS  
Sbjct: 72  AGGQAAGADAYVTLEPCSHFGRTPPCADALVKAGVRRVVAAMQDPNPLVSGSGLKRLSTH 131

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E E +     +++R   +R  +  KIA S D   G+    S  ITG  ++ 
Sbjct: 132 GIEVAYGLLEHEARELNAGFISRMTRQRPWVRSKIAASLDGKTGLNNGQSKWITGPSARQ 191

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSKII 237
            V   RAQS AIL G+GTVLADDP LT R    L       P R+I+D   +    +  +
Sbjct: 192 HVQQWRAQSCAILTGVGTVLADDPMLTVRDVTLLQQRHGVQPWRVIVDSQLRTPPAAATL 251

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVE 293
           +      V+I      PV   A R     +I         DL+ LL  L  R +  ++VE
Sbjct: 252 Q---AGRVLIAHAASLPVQEKALRDAGAELIAMPGPSGRVDLEALLHALAQRQINDVMVE 308

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSD 349
            GA +  S +   LVD ++LY + +++G G         L+E   +     +     G+D
Sbjct: 309 AGARLNGSLLYGGLVDELLLYYAPVLLGGGARDMFTMPALQEMQQKIQLHALDFRQVGAD 368


>gi|241662321|ref|YP_002980681.1| riboflavin biosynthesis protein RibD [Ralstonia pickettii 12D]
 gi|240864348|gb|ACS62009.1| riboflavin biosynthesis protein RibD [Ralstonia pickettii 12D]
          Length = 370

 Score =  348 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 124/362 (34%), Positives = 180/362 (49%), Gaps = 13/362 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S FD   M  AL  +   +  T+ NP V C+IV+D  VIG G T   G  HAEVQA+++
Sbjct: 2   FSDFDHAMMQRALALAEKGLFTTTPNPRVGCVIVRDDTVIGEGYTQPAGQDHAEVQAIKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G++ RGATAYVTLEPCSH+GR+PPCA  ++E GI RVV  ++DP+  VSGRGLQ L
Sbjct: 62  AQSRGQDVRGATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPAVSGRGLQKL 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              G+ +   ++E E +     +++R       + +K+  S D    +    S  IT   
Sbjct: 122 RDAGVDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITEAE 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++N  H  RA++ AIL GIGTV  D+P LT R        P R+++D    + LD+ I+ 
Sbjct: 182 ARNDGHRWRARACAILTGIGTVREDNPRLTVRAIN-TPRQPRRVLIDSALDVPLDAHILT 240

Query: 239 -TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVE 293
                 P +I     +     A  ++   +I         DL  +L  L  R +  L VE
Sbjct: 241 ADGHHEPTLIFAAQPEAGRMRALSERGAEVILLPNAAGKVDLAAVLRELGRREINELHVE 300

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDV 350
            G  +  S +   LVD I++Y +  V+G G       PL+       F        G D+
Sbjct: 301 AGFKLNGSLLREGLVDEILVYLAPKVLGSGQGMFNMGPLQTLEGAAEFFFHDISRIGGDL 360

Query: 351 CL 352
            +
Sbjct: 361 RI 362


>gi|46201728|ref|ZP_00208227.1| COG1985: Pyrimidine reductase, riboflavin biosynthesis
           [Magnetospirillum magnetotacticum MS-1]
          Length = 358

 Score =  348 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 141/357 (39%), Positives = 204/357 (57%), Gaps = 11/357 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M AAL  +R  +G    NP+V C+IV+DG V+GRG T  GG PHAE +AL  AG  A GA
Sbjct: 1   MRAALALARRGLGTVWPNPAVGCVIVRDGRVVGRGWTQPGGRPHAETEALAMAGRAANGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPC+H+G++ PCA  +I  G+ RVVV V DPD RV+G+G+  L   GI + + +
Sbjct: 61  TVYVTLEPCAHHGKTAPCADALIAAGVSRVVVAVQDPDSRVAGKGIDRLRVAGIPVTEGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           + +E       +  R    R  +TLK+A + D  I      S  ITG  ++   HLLRA+
Sbjct: 121 LHAEASELNAGFFLRINTGRPLVTLKLATTLDGRIATHTGESRWITGEQARAAAHLLRAE 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           +DAI+VG GT L DDP+LTCRL GL E SP+R+++D   +L L S+++ TA   P  ++T
Sbjct: 181 TDAIMVGSGTALHDDPDLTCRLPGLVERSPVRVVVDGRLRLPLTSRLVSTANEVPTWLLT 240

Query: 250 END-DPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
             D D     A+    ++++          DL+  L  L   GVT +LVEGGA ++ + +
Sbjct: 241 LEDCDSDRREAYEDAGVDVVEVSPGPDGAVDLELALQALGESGVTRVLVEGGAHLSAALL 300

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYIG 356
            + LVD ++ +R+  ++G  G+P+ +  G        +F  V     G DV   YI 
Sbjct: 301 RAGLVDRMVWFRAPRLMGGDGLPAAVSFGIDHLAQTPHFERVEIRALGDDVMETYIR 357


>gi|88859176|ref|ZP_01133817.1| Riboflavin biosynthesis protein [Pseudoalteromonas tunicata D2]
 gi|88819402|gb|EAR29216.1| Riboflavin biosynthesis protein [Pseudoalteromonas tunicata D2]
          Length = 373

 Score =  348 bits (894), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 121/371 (32%), Positives = 189/371 (50%), Gaps = 17/371 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  ++ D ++M+ A+  ++     TS NP+V C++VKDG ++G+G     G  HAEV AL
Sbjct: 1   MSFTALDYQYMALAIELAKKGRYTTSPNPNVGCVLVKDGQIVGQGYHQKAGEGHAEVHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +A E+A GATAYVTLEPCSH GR+ PCA  ++  G+ +V+  + DP+  VSGRGL  L 
Sbjct: 61  AQAKEQALGATAYVTLEPCSHTGRTGPCALALVNAGVIKVIAAMVDPNPAVSGRGLAILE 120

Query: 121 QKGIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI     +M+ E +     +L R       +  K+A S D    +A   S  ITG ++
Sbjct: 121 KAGIQTAHGLMQVEAEALNVGFLKRMRNAMPFVQCKLAASLDGKTALANGLSKWITGPLA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL--------QEHSPMRIILDPHFKLS 231
           + QV   RAQS A+L G  TVL D+ ++  R + L        Q   P+R+++D   +L+
Sbjct: 181 RAQVQDYRAQSCAVLTGADTVLVDNAKMNVRYDELINPPFSLAQLRQPIRVVIDSKHRLT 240

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC-RDLKKLLTILVGRGVTSL 290
            D    +  + +PVII+T   D          ++ +   +   DL + + +L  RG+  +
Sbjct: 241 PDLAFFQ--IESPVIILTTKLDISERWPHFVSHLLVPELNGQVDLSQAMQLLGARGINHI 298

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
            +E G  +A       LVD  I Y +  +IG  G  S L+   LE             DV
Sbjct: 299 WLEAGHTLAGQMAQQGLVDQFIFYLAPKLIGHSG-KSLLQLPVLESMAEVTELSI--DDV 355

Query: 351 CLEYIGKNLCL 361
            +  +G +L +
Sbjct: 356 SM--VGVDLKI 364


>gi|121634268|ref|YP_974513.1| putative diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/phosphoribosylamino)uracil reductase
           [Neisseria meningitidis FAM18]
 gi|120865974|emb|CAM09711.1| putative diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/phosphoribosylamino)uracil reductase
           [Neisseria meningitidis FAM18]
 gi|254670038|emb|CBA04840.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Neisseria meningitidis alpha153]
 gi|325131464|gb|EGC54171.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis M6190]
 gi|325137571|gb|EGC60152.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
           ES14902]
          Length = 369

 Score =  348 bits (893), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 128/366 (34%), Positives = 186/366 (50%), Gaps = 11/366 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +
Sbjct: 2   FSDTDISMMETALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   
Sbjct: 62  AGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++ 
Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V +LRA+S A+L GIGTVLAD+P L  R        P RI+LD   +L LDS ++    
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPLDSHLLTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGA 296
               I   E D+  L       +I I+          DL  L+ +L   G   ++VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +  +F+   L D I+LYRS  ++G G     +P           +  V  +  G D+  
Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGSGKDLLSLPENRAALSAPPLWTPVSSEILGHDIKT 360

Query: 353 EYIGKN 358
            +   +
Sbjct: 361 VFRKND 366


>gi|187927760|ref|YP_001898247.1| riboflavin biosynthesis protein RibD [Ralstonia pickettii 12J]
 gi|187724650|gb|ACD25815.1| riboflavin biosynthesis protein RibD [Ralstonia pickettii 12J]
          Length = 370

 Score =  348 bits (893), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 123/362 (33%), Positives = 180/362 (49%), Gaps = 13/362 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S FD   M  AL  +   +  T+ NP V C+IV+D  VIG G T   G  HAE+QA+++
Sbjct: 2   FSDFDHAMMQRALALAEKGLFTTTPNPRVGCVIVRDDTVIGEGYTQPAGQDHAEIQAIKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G++ RGATAYVTLEPCSH+GR+PPCA  ++E GI RVV  ++DP+  VSGRGLQ L
Sbjct: 62  AQSRGQDVRGATAYVTLEPCSHFGRTPPCADRLVEAGITRVVAAMEDPNPAVSGRGLQKL 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              G+ +   ++E E +     +++R       + +K+  S D    +    S  IT   
Sbjct: 122 RDAGVDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGISQWITETE 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++N  H  RA++ AIL GIGTV  D+P LT R        P R+++D    + LD+ I+ 
Sbjct: 182 ARNDGHRWRARACAILTGIGTVREDNPRLTVRAIN-TPRQPRRVLIDSALDVPLDAHILT 240

Query: 239 -TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVE 293
                 P +I     +     A  ++   +I         DL  +L  L  R +  L VE
Sbjct: 241 ADGHHEPTLIFAAQPEAGRMRALSERGAEVILLPNAAGKVDLAAVLRELGRREINELHVE 300

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDV 350
            G  +  S +   LVD I++Y +  V+G G       PL+       F        G D+
Sbjct: 301 AGFKLNGSLLREGLVDEILVYLAPKVLGSGQGMFNMGPLQTLEGAAEFFFHDISRIGGDL 360

Query: 351 CL 352
            +
Sbjct: 361 RI 362


>gi|170078074|ref|YP_001734712.1| riboflavin biosynthesis protein RibD [Synechococcus sp. PCC 7002]
 gi|169885743|gb|ACA99456.1| riboflavin biosynthesis protein RibD [Synechococcus sp. PCC 7002]
          Length = 371

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 116/361 (32%), Positives = 190/361 (52%), Gaps = 7/361 (1%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           + FD   M   +  ++   G T+ NP V  ++V+D  +IG G     G PHAEV AL EA
Sbjct: 10  TDFDRAMMQRCITLAKQAAGKTAPNPMVGAVVVQDQKIIGEGFHPGAGQPHAEVFALREA 69

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G  A+GAT YV+LEPC+H+GR+PPC+Q +++ GI +VVV + DP+  V+G GL+ L+  G
Sbjct: 70  GAAAQGATLYVSLEPCNHHGRTPPCSQAVVKAGISKVVVGMVDPNPLVAGGGLKTLTDAG 129

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +V  + E+  +     ++ R V +R    LK A++ D  I      S  IT   ++NQ
Sbjct: 130 IEVVTGVEEAACRALNAGFVWRMVHQRPLGILKYAMTLDGKIATTTGHSAWITHQETRNQ 189

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           V+ LR+Q DA++VG  TV  DDP LT    G  +H+P+RI++     L  D  +      
Sbjct: 190 VYDLRSQCDAVVVGGNTVRLDDPYLTTH--GTADHNPLRIVVSQTLTLPRDRHLWDVTAA 247

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             V++     +P +    R++ + +++ D    + ++  L  RG   +L E G  +A + 
Sbjct: 248 PTVVLTQATANPEMQAFLRQQGVEVVHLDPVSPEGVMQYLYDRGCLQVLWECGGTLAAAA 307

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362
           I S  +  ++ + +  +IG  G P+P+    L      +  +    +V L+ IG +  L 
Sbjct: 308 IASGSIQKVMAFIAPKIIGGQGAPTPVGNLGLTLMDEAITLE----NVQLQSIGHDFLLT 363

Query: 363 E 363
            
Sbjct: 364 G 364


>gi|192359452|ref|YP_001983157.1| riboflavin biosynthesis protein RibD [Cellvibrio japonicus Ueda107]
 gi|190685617|gb|ACE83295.1| riboflavin biosynthesis protein RibD [Cellvibrio japonicus Ueda107]
          Length = 383

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 193/380 (50%), Gaps = 23/380 (6%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M ++  D RFM+ ALR +   +  T  NP V C++VK+  +I  G     G  HAEV AL
Sbjct: 1   MALTRDDHRFMARALRLAERGLYTTMPNPRVGCVLVKNQQIIAEGWHVRAGEGHAEVNAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             A E+ARGATAYVTLEPC+H G++ PC+Q +I+ G+ RVV  ++DP+  VSGRGL+ L+
Sbjct: 61  RIAAEQARGATAYVTLEPCNHTGKTGPCSQALIDAGVARVVYAMEDPNPLVSGRGLERLA 120

Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI VD  + E + +     ++TR   KR  +  K+A+S D    MA   S  IT   +
Sbjct: 121 AAGIEVDGPLFEEQARALNPGFITRMERKRPLLRCKMAMSLDGRTAMASGESKWITSPKA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTC--------RLNGLQEHSPMRIILDPHFKLS 231
           +  V  LRA S AI+ GIG+VL D+ +LT         R   +    P+R+ILD   +L 
Sbjct: 181 RADVQRLRAASCAIVTGIGSVLQDNSQLTLRARELGLPRAEDIARRQPLRVILDSRLQLP 240

Query: 232 LDSKIIKTAL-------LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLT 280
            D+ I++TA          P+++V         L     ++ ++    R    DL+ L+ 
Sbjct: 241 RDALIMQTADPNSPELVPGPILLVHNGTADGAQLDGWPAHVELLALPGRDGRIDLEALVR 300

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKN 337
            L  R    +L+E GA +A +F+   L+D +++Y +  ++G    P    PLE       
Sbjct: 301 ELAQRQCNEVLIEAGATLAGAFLRRGLLDEVVVYMAPKLLGSQARPLFELPLETMSASLA 360

Query: 338 FMCVRRDYFGSDVCLEYIGK 357
                    G D  +  +  
Sbjct: 361 LKITDMRALGQDWRITAVPD 380


>gi|309780821|ref|ZP_07675562.1| riboflavin biosynthesis protein RibD [Ralstonia sp. 5_7_47FAA]
 gi|308920503|gb|EFP66159.1| riboflavin biosynthesis protein RibD [Ralstonia sp. 5_7_47FAA]
          Length = 370

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 122/362 (33%), Positives = 180/362 (49%), Gaps = 13/362 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S FD   M  AL  +   +  T+ NP V C+IV+D  VIG G T   G  HAE+QA+++
Sbjct: 2   FSDFDHAMMQRALALAEKGLFTTTPNPRVGCVIVRDDTVIGEGYTQPAGQDHAEIQAIKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G++ RGATAYVTLEPCSH+GR+PPCA  ++E GI RVV  ++DP+  VSGRGLQ L
Sbjct: 62  AQSRGQDVRGATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPAVSGRGLQKL 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              G+ +   ++E E +     +++R       + +K+  S D    +    S  IT   
Sbjct: 122 RDAGVDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITEAE 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++N  H  RA++ AIL GIGTV  D+P LT R        P R+++D    + LD+ I+ 
Sbjct: 182 ARNDGHRWRARACAILTGIGTVREDNPRLTVRAVN-TPRQPRRVLIDSALDVPLDAHILT 240

Query: 239 -TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVE 293
                 P +I     +     A  ++   +I         DL  +L  L  R +  L VE
Sbjct: 241 ADGHHEPTLIFAAQPEAGRMRALSERGAEVILLPNAAGKVDLAAVLRELGRREINELHVE 300

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDV 350
            G  +  S +   LVD +++Y +  V+G G       PL+       F        G D+
Sbjct: 301 AGFKLNGSLLREGLVDEVLVYLAPKVLGSGQGMFNMGPLQTLEGAAEFFFHDISRIGGDL 360

Query: 351 CL 352
            +
Sbjct: 361 RI 362


>gi|292492824|ref|YP_003528263.1| riboflavin biosynthesis protein RibD [Nitrosococcus halophilus Nc4]
 gi|291581419|gb|ADE15876.1| riboflavin biosynthesis protein RibD [Nitrosococcus halophilus Nc4]
          Length = 373

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 117/329 (35%), Positives = 181/329 (55%), Gaps = 14/329 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ AL+ +   +  T  NP V C++V+ G ++G G   + G  HAEV AL +A   
Sbjct: 6   DRAYMARALKLAWRGLFTTDPNPRVGCVLVRAGEIVGEGWHQWAGDAHAEVNALRQADVR 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGAT YVTLEPC H GR+PPC + +IE G+ RVV  + DP+ +V+G+GL  L + G+ +
Sbjct: 66  ARGATCYVTLEPCCHRGRTPPCTEALIEAGVVRVVAAMRDPNPKVAGQGLAQLREAGLQV 125

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +++ E +     ++ R V+ R  +  K+A+S D    +A   S  IT   ++  V  
Sbjct: 126 EYGLLQEEAQALNPGFVQRLVQGRPWVRCKLAMSLDGATALASGESRWITAPPARRDVQR 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQ-------EHSPMRIILDPHFKLSLDSKIIK 238
            RA+S AIL GIGTV+ DDP L  R   LQ       +  P R+ILD    +S  ++++ 
Sbjct: 186 WRARSSAILTGIGTVIGDDPALNVRYEELQNEVPPGFDRQPWRVILDRKLAISEKARLL- 244

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEG 294
            +L  PV+I   + +   A + R K   +I         DLK L+ +L  R +  L VE 
Sbjct: 245 -SLPGPVLIACADGEQPKAESLRSKGAEVISLPVASEGLDLKALMAVLAAREINELHVEC 303

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GA +A S + + L+D ++LY +  ++GE 
Sbjct: 304 GARLAGSLLQAGLMDELVLYIAPKLMGEA 332


>gi|126666704|ref|ZP_01737681.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
           C-terminal [Marinobacter sp. ELB17]
 gi|126628749|gb|EAZ99369.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
           C-terminal [Marinobacter sp. ELB17]
          Length = 371

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 129/371 (34%), Positives = 187/371 (50%), Gaps = 17/371 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ D  FM+ A++ +      T  NP V C+I +   ++G       G  HAEV+AL +
Sbjct: 2   ITTRDRAFMARAVQLAWRGRYSTHPNPRVGCVIARGDRILGESWHERAGEAHAEVRALSQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  ARG+TAYVTLEPCSH+GR+PPCA+ +IE G+ RV     DP+  VSGRGL+ L   
Sbjct: 62  AGTSARGSTAYVTLEPCSHFGRTPPCAKALIEAGVARVFAATLDPNPNVSGRGLEMLRAA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++  E       ++ R    R  + LK+A S D    MA   S  ITG  S++
Sbjct: 122 GIRVHVGLLAGEAAKLNPGFMKRMTSGRPWVRLKMAASLDGRTAMASGESQWITGPESRS 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL--------QEHSPMRIILDPHFKLSLD 233
            V  LRA SDAIL G+GTVLADDP LT R   +            P+R+I D   +    
Sbjct: 182 DVQRLRAMSDAILTGVGTVLADDPSLTVRREEMGDIGSATEPGRQPLRVIADRDTRTPAS 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTS 289
           +KI +   +  V   T +     A       I +      D    + ++L  L   G+  
Sbjct: 242 AKIFRGGKVQ-VFCATASLATSAAQDLAALGIRLRGVAWHDKGVNVAEMLDTLGDIGINE 300

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYF 346
           +LVE G  +A SFI+  LVD + LY++ + +G  G P+   PLE    +  +  + R   
Sbjct: 301 VLVEAGPTLAGSFISENLVDELWLYQAPVFLGSTGRPTANLPLESMADKIQWQVLDRRQL 360

Query: 347 GSDVCLEYIGK 357
           G+D  L    +
Sbjct: 361 GADQRLILARR 371


>gi|255994555|ref|ZP_05427690.1| riboflavin biosynthesis protein RibD [Eubacterium saphenum ATCC
           49989]
 gi|255993268|gb|EEU03357.1| riboflavin biosynthesis protein RibD [Eubacterium saphenum ATCC
           49989]
          Length = 368

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 121/357 (33%), Positives = 182/357 (50%), Gaps = 19/357 (5%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65
            ++MS AL  +   +G TS NP V  +IVK+G +IG+G     G  HAEV+A+++A    
Sbjct: 10  EKYMSMALELAEKGLGTTSPNPMVGAVIVKNGEIIGKGFHKKAGSAHAEVEAVQDAHSKD 69

Query: 66  -EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            +  GA  YVTLEPCSH GR+P C+  +I+  I RV + + DP+  V+G G++ L    I
Sbjct: 70  YDIEGADMYVTLEPCSHKGRTPACSDLLIKEKIGRVFIGMRDPNPLVNGGGIEKLEGALI 129

Query: 125 IVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
             +  +  E        +L    EK  ++  K  ++ D  I      S  IT   S+  V
Sbjct: 130 KCEVGILEERCRQLNKVFLKYVTEKMPYVIFKSGITLDGKIATGTGKSKWITSEESRKDV 189

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           HLLR++  AI+VGIGTVLADDP LT R  G  +  P++II+D   +L L++K++      
Sbjct: 190 HLLRSRCSAIMVGIGTVLADDPRLTARFEGAYD--PVKIIVDSKLRLPLEAKVVGEDC-- 245

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            ++   EN           K + II    +  DL+K +  L    + S+L+EGGA +A S
Sbjct: 246 -IVGCCENVSREKIEELTNKGVKIIKAGKNKVDLRKFMAELAKLEIDSVLLEGGATLAAS 304

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLE------EGYLEKNFMCVRRDYFGSDVCL 352
               +LVD I LY + ++ G G   S LE      +         ++ +    DV L
Sbjct: 305 MFKEQLVDEIRLYMAPMIFGSG--KSFLEGELDIDDVSDAIRIEGMKVEKINEDVVL 359


>gi|330812014|ref|YP_004356476.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; riboflavin
           biosynthesis protein RibD [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327380122|gb|AEA71472.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; riboflavin
           biosynthesis protein RibD [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 377

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 183/367 (49%), Gaps = 21/367 (5%)

Query: 1   MPVSS----FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAE 56
           M  S+     DA +M+ AL  +R     T  NP V C+IV+DG ++G G     G PHAE
Sbjct: 1   MTASAQQAILDAHYMARALELARRGHYTTHPNPRVGCVIVRDGQIVGEGWHIRAGEPHAE 60

Query: 57  VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           V AL  AGE+ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGL
Sbjct: 61  VHALRAAGEQARGATAYVTLEPCSHHGRTPPCADALVNAGVARVVAAMQDPNPEVAGRGL 120

Query: 117 QWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
           Q L+Q GI  +  ++E E +     +L R  +    + +K+A+S D    M    S  IT
Sbjct: 121 QRLAQAGIATESGVLEGEARKLNEGFLKRMEQGLPFVRVKLAMSLDGRTAMESGESQWIT 180

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILD 225
           G  +++ V  LRAQ+  +L G  TVLAD+  LT R + L              P+R+++D
Sbjct: 181 GPAARSAVQRLRAQASVVLTGADTVLADNARLTVRADELGLDAEQTASVMSRPPLRVLVD 240

Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285
              ++ LD+   K     P ++ T            +  I        DL +LL  L GR
Sbjct: 241 GRLRVPLDAAFFK---AGPALVATCMAVEEQYANGPECMIVAGDDGQVDLHRLLVELAGR 297

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVR 342
           GV  +LVE G  +A +F    LVD   ++ +   +G    P    PL +           
Sbjct: 298 GVNEVLVEAGPRLAGAFARQGLVDEFQIFIAGKFLGSSARPLLDWPLAQMKDAPQLKITE 357

Query: 343 RDYFGSD 349
               G D
Sbjct: 358 IRAVGDD 364


>gi|220931696|ref|YP_002508604.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase;5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Halothermothrix orenii H 168]
 gi|219993006|gb|ACL69609.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase;5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Halothermothrix orenii H 168]
          Length = 371

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 128/356 (35%), Positives = 198/356 (55%), Gaps = 13/356 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M   L  +R   G T+ NP V  +IV++G ++G+G   Y G PHAE+ ALEEAGE ARG
Sbjct: 12  YMQKVLELARKGEGYTAPNPLVGAIIVREGEIVGQGFHQYYGGPHAEILALEEAGERARG 71

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           AT YV LEPC HYG++PPC + II+ G++RV+  + DP+  V+G+G++ L + GI +   
Sbjct: 72  ATLYVNLEPCCHYGKTPPCTKKIIDSGVKRVLAAMFDPNPLVAGKGVKELQENGIEVEVG 131

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++  E +     Y+      R  + LK A++ D  I      S  I+   ++   H LR 
Sbjct: 132 LLRKEAERLNEVYIRYISSDRPFVYLKSALTLDGFIATVTGDSRWISNEKARLFAHTLRH 191

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA+LVGIGT+L DD  LT RL   +    +RIILDP   +  D+++I        I+V
Sbjct: 192 KVDAVLVGIGTILKDDSALTTRLPDGRGEDSIRIILDPELSIPPDARVINQKSRKRTILV 251

Query: 249 TEN--DDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAHS 301
                D+       RK+N+ I+     +     LK LL IL  +G++S+LVEGG  V +S
Sbjct: 252 CGEDYDNKKYQGLLRKENLEILSVQLNEEGKIPLKALLRILHKQGISSILVEGGGRVNYS 311

Query: 302 FINSRLVDSIILYRSQIVI-GEGGIPSPLEEGY--LEKNFMC--VRRDYFGSDVCL 352
           F+   LVD +  + + I++ G+ GI     EG   +EK +    V+ ++F  ++ +
Sbjct: 312 FLKEGLVDKVYFFIAPIILGGDDGIRVFSGEGVADIEKAWKLRDVQYNFFDDNILI 367


>gi|325295467|ref|YP_004281981.1| riboflavin biosynthesis protein RibD [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065915|gb|ADY73922.1| riboflavin biosynthesis protein RibD [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 362

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 123/359 (34%), Positives = 194/359 (54%), Gaps = 9/359 (2%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D +FM  A+  +    G T  NP+V  +IVKDG VI  G     G PHAE  A+ +AG
Sbjct: 2   TQDEKFMKLAISEAYKAKGRTLPNPAVGAVIVKDGKVIATGYHERAGLPHAESVAISKAG 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E+A+GAT YVTLEPC+HYG++PPC++ II+ GI+RVVV + DP+  V+  G++ L   GI
Sbjct: 62  EKAKGATLYVTLEPCNHYGKTPPCSEKIIKAGIKRVVVGIRDPNP-VARGGVEKLKNAGI 120

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++E E    +  ++    EKR  ++LK+A + D  I      S  IT   S+  V
Sbjct: 121 EVKVGVLEKECFELIDDFIVNLKEKRPFVSLKLAATLDGKIADYKGNSKWITSEESRKLV 180

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H+LR+  +A++VGIGTVL DDP L  R     +  P  I++DPH K+ L  ++IK+    
Sbjct: 181 HILRSYHNAVMVGIGTVLKDDPLLNVR-KVPADVQPKAIVVDPHLKIPLSCRLIKSRSED 239

Query: 244 PVIIVT-ENDDPVLALAFRKKNINIIYC--DCRDLKKLLTIL-VGRGVTSLLVEGGAAVA 299
            +II T E+     AL  + K + ++    +  +LK  L  L    G+ S++ EGG+ +A
Sbjct: 240 LIIITTRESMLSDKALILKGKGVKLLEAGENSIELKIALEKLKGEFGIYSVMCEGGSKLA 299

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE--KNFMCVRRDYFGSDVCLEYIG 356
            S +   L+D   L+ +  ++G  G+        +E          +   +D+ ++   
Sbjct: 300 WSLLEGNLIDKFYLFYAPKILGGKGMSMFDGSFSIEDAHQIRLFSINSVSNDLLIKAYR 358


>gi|289423250|ref|ZP_06425061.1| riboflavin biosynthesis protein RibD [Peptostreptococcus anaerobius
           653-L]
 gi|289156350|gb|EFD05004.1| riboflavin biosynthesis protein RibD [Peptostreptococcus anaerobius
           653-L]
          Length = 433

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 123/417 (29%), Positives = 192/417 (46%), Gaps = 68/417 (16%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D  +M  AL  ++  +   S NP V  +IVKD  +IG+G     G  HAE  A+++  
Sbjct: 8   EKDQHYMKIALDLAKRGIARVSPNPLVGAVIVKDDQIIGKGYHEKYGGLHAERNAIKDYK 67

Query: 65  EEA--------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
             A         GAT YVTLEPC HYG++PPC + IIE  I+RVVV   DP+  V+G+G+
Sbjct: 68  NRAINDPNLTIEGATMYVTLEPCCHYGKTPPCTEAIIENKIKRVVVASLDPNPLVAGKGV 127

Query: 117 QWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
           + L + GI VD  +++ E       +    + KR  +T+K A++ D  +      S  IT
Sbjct: 128 KILEEVGIEVDIGVLKDEADRQNRIFRHYIINKRPLVTMKYAMTMDGKLATHTGKSKWIT 187

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-------------HSPMRI 222
           G  ++ +VHL R ++ AI+VG+GTVLADDP L CRL                   +P+R+
Sbjct: 188 GHDARRRVHLDRLRNMAIMVGVGTVLADDPSLNCRLEDFDGFDKIKKDYSIEGLRNPIRV 247

Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--------- 273
           ++D   +   +SKI+ +A     II T ++D     A+  ++  +I    +         
Sbjct: 248 VVDSSLRTPFNSKIVTSAKDIKTIIFTISEDMEKIRAYEDRDCIVIKTKKKLYRSIGKKQ 307

Query: 274 --------------------------------DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
                                           DL+ L+ IL   G+ S+L+EGG+ +  S
Sbjct: 308 VQIGQEIQMDQDGHKYQEYQVYQERQGERFVVDLEDLVEILGQMGIDSILLEGGSQLNFS 367

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
            + S +VD +  Y    + G     SP+    ++          +  D  G D+ LE
Sbjct: 368 ALESGIVDRVQAYIGPKIFGGEKAKSPIGGIGVDLPEDAYMLENIEFDSVGKDILLE 424


>gi|193212377|ref|YP_001998330.1| riboflavin biosynthesis protein RibD [Chlorobaculum parvum NCIB
           8327]
 gi|193085854|gb|ACF11130.1| riboflavin biosynthesis protein RibD [Chlorobaculum parvum NCIB
           8327]
          Length = 371

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 118/365 (32%), Positives = 183/365 (50%), Gaps = 13/365 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   D   M   L  +    G  S NP V  +IV DG VIG G     G PHAE  A+  
Sbjct: 7   MRPEDEGHMRRCLELAERGAGSVSPNPMVGSVIVHDGRVIGEGWHQKYGGPHAEPHAIAS 66

Query: 63  AGEEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             +EA  R +T YV LEPCSH+G++PPCA  I+E  I RVVV   DP  +V+G+G+  L 
Sbjct: 67  VEDEALLRQSTLYVNLEPCSHHGKTPPCADLIVEKCIPRVVVGCLDPHKKVAGKGIARLR 126

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + G+ +   ++E+E +    A++T   + R  + LK A + D  I  +   S  ITG  S
Sbjct: 127 EAGVEVTVGVLEAESERLNEAFMTSHRKGRPFVALKTAQTLDGRIATSLGASKWITGEAS 186

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           + +VH LR   DA+L G  T LADD ELT R        P+R++LDP  ++  + +I   
Sbjct: 187 RCEVHRLRCAYDAVLCGASTALADDAELTVRFCA--GRQPLRVLLDPRLQVPHEFRIFND 244

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGG 295
           A    V  + +  +PVL      + + ++         DL ++   L  R V S++VEGG
Sbjct: 245 AAKTLVFALRDEAEPVLVSQLEARGVEVVLIGQSEGTLDLAQVFAELHRRRVLSVMVEGG 304

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVC 351
           + ++ + + S +VD   ++ +  + G+ G+PS     +    +       R + FG D+ 
Sbjct: 305 SRLSAAMVRSGIVDKYYVFIAPKLFGDDGLPSFGPLDVIRPDMATKLSFTRVERFGEDLL 364

Query: 352 LEYIG 356
           +E   
Sbjct: 365 VEAYP 369


>gi|300721779|ref|YP_003711057.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Xenorhabdus nematophila ATCC 19061]
 gi|297628274|emb|CBJ88835.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Xenorhabdus nematophila ATCC 19061]
          Length = 369

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 124/370 (33%), Positives = 180/370 (48%), Gaps = 18/370 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + D  +MS AL  +      TS NP+V C+IVKD  ++G G     G PHAEV AL  
Sbjct: 1   MMTLDEIYMSRALELAYQGRFTTSPNPNVGCVIVKDEEIVGEGFHLRAGEPHAEVHALRM 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE+A+GATAYVTLEPCSH+G++PPCA  +I  G+ RVVV + DP+ +V+GRGL  L Q 
Sbjct: 61  AGEKAKGATAYVTLEPCSHHGKTPPCADALIAAGLSRVVVAMQDPNPQVAGRGLYKLQQA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   +M  + +     +L R      ++ LK+  S D    ++   S  IT   ++ 
Sbjct: 121 GIAVEHGLMMDQAESLNKGFLKRMRTGFPYLQLKLGSSLDGRTALSSGESQWITSPQARQ 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V  LRAQ  AIL    TVLADDP +T R N L               P+RII D   ++
Sbjct: 181 DVQTLRAQCSAILSSSATVLADDPSMTVRWNELDAETQSVYPEERLRQPIRIITDSQNRV 240

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +   ++I+        +   N +        K+ +   +    DL  L+  L  R + S+
Sbjct: 241 TPQHQVIQQTGQ--CWLAYTNKNEQHWPDNVKQILLPAHGGGVDLVLLMMQLGKRQINSV 298

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYF 346
             E G A+A + ++  LVD +ILY +  V+G           L +      F        
Sbjct: 299 WAECGPALAGALLSLGLVDELILYIAPKVLGNSARGLFDIPELHKLSDAPEFTLFDVKQI 358

Query: 347 GSDVCLEYIG 356
           G D+ L    
Sbjct: 359 GPDIRLRLRP 368


>gi|262376969|ref|ZP_06070195.1| riboflavin biosynthesis protein RibD [Acinetobacter lwoffii SH145]
 gi|262308007|gb|EEY89144.1| riboflavin biosynthesis protein RibD [Acinetobacter lwoffii SH145]
          Length = 362

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 132/366 (36%), Positives = 191/366 (52%), Gaps = 19/366 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M   + D  +M  A+  +R     T  NP+V C+IVKDGIVIG G     G PHAEV AL
Sbjct: 1   MVELNQDQVWMRRAIELARQGQYSTKPNPNVGCVIVKDGIVIGEGFHPQAGQPHAEVFAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AGE+ARGATAYVTLEPC+HYGR+PPCA+ ++E G+ +VVV   DP+  V+G+G+Q L 
Sbjct: 61  RQAGEQARGATAYVTLEPCAHYGRTPPCAKGLVEAGVAKVVVACPDPNPLVAGKGVQILK 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
              I +   + E E       +L        ++ LKIA S D    MA   S  ITG  +
Sbjct: 121 DAEIEVEIGICEDEAHQLNQGFLKAMATGMPYMRLKIASSLDGRTAMASGESKWITGLAA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQE----HSPMRIILDPHFKLSLDS 234
           +  V   RA S A++ GI TVLADD EL  R L+GL++      P RIILD   +L L++
Sbjct: 181 RQDVQHWRAISGAVITGIDTVLADDCELNVRQLDGLEDIKTVVQPKRIILDRQGRLPLNA 240

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVE 293
           KI+   +    ++V               ++ +++   + L +LL  LV    +  +LVE
Sbjct: 241 KIL---VQPETVMVMG------PFRQELADLGVLHLPVQPLAELLKQLVQQHQIYDVLVE 291

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350
            GA ++ +F+  +LVD +I Y +  ++G+       +       +  F        G DV
Sbjct: 292 AGATLSTAFLQQKLVDELISYVAPTLLGQSARTMFNAEFSHMAEQLRFKLRDVTRLGDDV 351

Query: 351 CLEYIG 356
               I 
Sbjct: 352 RFRLIP 357


>gi|37520819|ref|NP_924196.1| riboflavin biosynthesis protein [Gloeobacter violaceus PCC 7421]
 gi|35211814|dbj|BAC89191.1| riboflavin biosynthesis protein [Gloeobacter violaceus PCC 7421]
          Length = 366

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 108/361 (29%), Positives = 175/361 (48%), Gaps = 8/361 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           V+  D  +M   L  +    G T+ NP V  ++V DG+ +G G     G PHAE  AL  
Sbjct: 2   VAVSDEDWMERCLALAEQAWGRTTPNPLVGAVVVNDGLAVGEGFHPKAGAPHAEAFALRA 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ ARGAT YV LEPC+H+GR+PPC + I+  G++RVV+ + DP+  VSGRGL+ L   
Sbjct: 62  AGDLARGATLYVNLEPCNHHGRTPPCTEAIVAAGLQRVVIGMVDPNPIVSGRGLERLRTA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++    +    A+       R    LK A++ D         S  I+G  ++ 
Sbjct: 122 GIEVSVGVLSDRCERLNEAFSHFMRTGRPFGVLKYAMTLDGKTATRTGHSFWISGQAARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           + H LRA +DA++VG  TV  DDP+LT RL   +  +P+R++L     L  ++++     
Sbjct: 182 RTHRLRAFADAVIVGGNTVRLDDPQLTVRL--AEGRNPLRVVLSRTLALPAEARLWLDQT 239

Query: 242 LAPVIIVT-ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
            +P ++ T    DP +     +  + +   D      +L  L      S+L E G  +A 
Sbjct: 240 PSPTLVFTGAQGDPQMRSHLERLGVEVQVLDELTPAAVLEKLASYPCVSVLWECGGTLAW 299

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
           S +    V  +I + +  ++G     +P+      K    +R +     V  E +G++  
Sbjct: 300 SALTDGSVQKVICFVAPCLVGGAQAYTPVAGEGFAKMHAAMRLER----VHAEPVGEDWM 355

Query: 361 L 361
            
Sbjct: 356 W 356


>gi|237747123|ref|ZP_04577603.1| riboflavin biosynthesis protein RibD [Oxalobacter formigenes
           HOxBLS]
 gi|229378474|gb|EEO28565.1| riboflavin biosynthesis protein RibD [Oxalobacter formigenes
           HOxBLS]
          Length = 374

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 112/358 (31%), Positives = 189/358 (52%), Gaps = 19/358 (5%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
             FM  AL  +R    L S NP V C+IV++G ++G G T   G  HAE++AL EA   G
Sbjct: 17  EFFMKRALELARNCSVLVSPNPKVGCVIVRNGHILGEGYTRPAGKNHAEIEALNEAVSRG 76

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E+ RGAT YVTLEPC+H+GR+PPCA  ++  G+ RV+  ++DP+  V+G+GL+ L   GI
Sbjct: 77  EDCRGATVYVTLEPCAHFGRTPPCADALVRAGVSRVIAAMEDPNPLVAGKGLEKLKAAGI 136

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            ++  ++  E +     +L+R    R  + +K+A S D    ++   S  IT   ++   
Sbjct: 137 HVICGILADEAREMNRGFLSRVERGRPWVRMKVAASLDGKTALSNGESQWITSEKAREDG 196

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  R ++DAI+ GIGTV+ D+P L  RL       P+RI++D   K  LD+++++     
Sbjct: 197 HRWRMRADAIMTGIGTVIQDNPRLNVRLPDA-VRQPVRIVVDSQLKTPLDARVLEEG--- 252

Query: 244 PVIIVTENDDPVLALAFRKKNINIIY----CDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
              I + N  P    A ++K + +          DL +++  L  + +  + VE GA + 
Sbjct: 253 KTWIFSANASPYKIGAMQEKGVRVFSTINNTGRVDLAEMMETLAKQEINEIHVEAGATLN 312

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCL 352
            + +   LVD +++Y +   +G G   + L   ++++    +  D+      G D+ +
Sbjct: 313 GALMQESLVDEMLIYLAPCFLGSG--KNMLSLNHIDRLADKIALDFHEIVPIGDDIRI 368


>gi|224824436|ref|ZP_03697543.1| riboflavin biosynthesis protein RibD [Lutiella nitroferrum 2002]
 gi|224602929|gb|EEG09105.1| riboflavin biosynthesis protein RibD [Lutiella nitroferrum 2002]
          Length = 364

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 140/362 (38%), Positives = 193/362 (53%), Gaps = 13/362 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S+ D   M+ ALR +   +  T+ NP V C++V+DG V+G G     G PHAEV AL
Sbjct: 1   MTFSAVDHAMMAQALRLAEQGLYTTTPNPRVGCVVVRDGEVVGEGWHIAAGTPHAEVHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE ARGATAYVTLEPCSHYGR+PPCA+ +IE G+ RVV  + DP   V+GRGL  L 
Sbjct: 61  RMAGELARGATAYVTLEPCSHYGRTPPCAKGLIEAGVGRVVAAMQDPYHEVAGRGLDMLR 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI +   ++E+E +     +L+R    R  +TLK A S D    +    S  ITG  +
Sbjct: 121 AAGIEVAVGLLEAEARRLNKGFLSRAERGRPWVTLKAAASLDGKTALLNGASQWITGPDA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  VH LRA+S AIL G GTVLADDP+LT R        P R+++D   + S  ++I + 
Sbjct: 181 RRDVHRLRARSCAILTGSGTVLADDPQLTVREV-FTPRQPRRVVVDSRLQTSPGARIYRD 239

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGG 295
                 I+ T   D      + ++ + +          DL  LL  L   GV  L+VE G
Sbjct: 240 G---ETILATAVADAARHQPYLEQGVTVWVLGDTAGRVDLAALLARLAQEGVGELMVEAG 296

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVR-RDYFGSDVC 351
           A +  + + + LVD I+LY +  ++G+        P+ E    K  + VR     G DV 
Sbjct: 297 AGLNGALLQAGLVDEIMLYLAPTLLGDAAQGLFGWPVLESLAGKRNVVVRDLRMVGQDVR 356

Query: 352 LE 353
           LE
Sbjct: 357 LE 358


>gi|260441248|ref|ZP_05795064.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Neisseria gonorrhoeae DGI2]
 gi|268600600|ref|ZP_06134767.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID18]
 gi|291044592|ref|ZP_06570301.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae DGI2]
 gi|268584731|gb|EEZ49407.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID18]
 gi|291011486|gb|EFE03482.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae DGI2]
          Length = 369

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 129/366 (35%), Positives = 189/366 (51%), Gaps = 13/366 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +      TS NP V C+I     ++G+G     G PHAEV AL +
Sbjct: 2   FSDTDISMMENALDLADLGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   
Sbjct: 62  AGEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  +  ++E++ +     +L+R   +R  + LK AVS D    ++   S  ITG  ++ 
Sbjct: 122 GIKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V +LRA+S A+L GIGTVLAD+P L  R        P RI+LD   +L  DS+++ T  
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPDSRLL-TDG 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGG 295
            +P +I T   +      +RK     I           DL +L+ +L G G   ++VE G
Sbjct: 240 QSPTLIATLERNEDRLRPYRKHAHVRILMPSETAGGKIDLHRLMRLLAGEGYGEVMVEAG 299

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           A +  +F+   L D I+LYRS  ++G G     +P           +  V  +  G D+ 
Sbjct: 300 AKLTSAFLAENLADEIVLYRSPKILGIGSGLFCLPENRAALSAPPLWTPVSTEILGHDIK 359

Query: 352 LEYIGK 357
             +   
Sbjct: 360 TVFRKN 365


>gi|258592177|emb|CBE68486.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
           reductase [NC10 bacterium 'Dutch sediment']
          Length = 372

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 127/365 (34%), Positives = 184/365 (50%), Gaps = 12/365 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            +  D RFM  AL  +    G TS NP V  ++V+ G ++G G  A  G PHAEV ALE 
Sbjct: 2   FTPDDERFMRHALVLAEKGRGRTSPNPMVGAVVVQHGRIVGEGYHAQAGKPHAEVVALEY 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  AR A  YVTLEPC HYGR+PPC   II+ GIRRVVV   DP+  VSGRG+Q L   
Sbjct: 62  AGGAARNADLYVTLEPCGHYGRTPPCTDRIIQAGIRRVVVPTIDPNPLVSGRGVQSLRDA 121

Query: 123 G-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G I+   +  ++      A++     +   + LK AVS D  I      S  ++G  S+ 
Sbjct: 122 GVIVDLGLRSADATALNEAFIKFMKHRTPFVVLKAAVSLDGKIATRTGDSRWVSGERSRE 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            +H LR Q DA++VGIGTV  D+P LT RL       P+R+++D       D++I++   
Sbjct: 182 HIHTLRDQIDAVIVGIGTVRRDNPRLTTRLPEG-GRDPIRVVVDGLGPFPDDAQILQAEA 240

Query: 242 LAPVIIVTENDDPVLA-LAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGA 296
            +   +    D P     A  ++ + ++          L+ LL  L  R VTS+++EGG 
Sbjct: 241 ASRTWVAVAADAPAKRIRALERRGLTVLEAGGFRGRVSLEHLLKRLGEREVTSVMIEGGE 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVC 351
            +  S I   +VD  +L+ + I++G    PS      ++          +R +  G DV 
Sbjct: 301 GIFTSAIEEGIVDKFLLFVAPILLGGKTAPSLFGGTGIDNIGQALRLARLRIEQLGEDVL 360

Query: 352 LEYIG 356
           +E   
Sbjct: 361 IEGYR 365


>gi|218767600|ref|YP_002342112.1| putative diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/phosphoribosylamino)uracil reductase
           [Neisseria meningitidis Z2491]
 gi|121051608|emb|CAM07908.1| putative diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/phosphoribosylamino)uracil reductase
           [Neisseria meningitidis Z2491]
          Length = 369

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 128/365 (35%), Positives = 185/365 (50%), Gaps = 11/365 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +
Sbjct: 2   FSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   
Sbjct: 62  AGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLAMLEAA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++ 
Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V +LRA+S A+L GIGTVLAD+P L  R        P RI+LD   +L LDS ++    
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPLDSHLLTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGA 296
               I   E D+  L       +I I+          DL  L+ +L   G   ++VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +  +F+   L D I+LYRS  ++G G     +P           +  V  +  G D+  
Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGGGSGLFCLPENRAALSAPPLWTPVSSEILGHDIKT 360

Query: 353 EYIGK 357
            +   
Sbjct: 361 VFRKN 365


>gi|254421232|ref|ZP_05034950.1| riboflavin biosynthesis protein RibD [Synechococcus sp. PCC 7335]
 gi|196188721|gb|EDX83685.1| riboflavin biosynthesis protein RibD [Synechococcus sp. PCC 7335]
          Length = 363

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 108/353 (30%), Positives = 170/353 (48%), Gaps = 9/353 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D   M      +    G T+ NP V  +I++DG ++G G     G PHAE+ AL  A + 
Sbjct: 11  DTDLMRRCCELAAQAAGHTAPNPLVGSIILRDGEIVGEGFHPKAGEPHAEIFALRAASDR 70

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YV LEPC+H G +PPC++ +I+ GIRRVV+ + DP+ + +  G++ L Q GI V
Sbjct: 71  AQGATLYVNLEPCNHKGLTPPCSEAVIKAGIRRVVIGMRDPNPK-AKGGIEKLRQAGIEV 129

Query: 127 DRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +E +       A++ R         LK A++ D  I      S  I+G  S+ +VH 
Sbjct: 130 VVGIEVDRCHQLNEAFIHRVTHNSPFGILKYAMTLDGKIATTAGHSAWISGPSSRQRVHQ 189

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR++ DA++VG  TV  D+P LT    G    +P+R+++  H  L  D  + KT +   +
Sbjct: 190 LRSRCDAVIVGGNTVRQDNPNLTSHGEGT--RNPLRVVMSRHLDLPSDRNLWKTEVAPTL 247

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           +    N +     A  ++ + I+  +      ++  L  RG  S+L E G  +A   I +
Sbjct: 248 VFTQTNANLETKAALVRQGVEIVALESLTPAAVMAHLYQRGAMSVLWECGGVLAAKAIAA 307

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
             V  I  + +  +IG    PSP+ E              V     G D  L+
Sbjct: 308 GSVQKIWAFIAPKLIGGQRAPSPIGELGFTAMTEALALHSVSITPVGQDFLLK 360


>gi|58583479|ref|YP_202495.1| riboflavin-specific deaminase; 5-amino-6-uracil reductase
           [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625292|ref|YP_452664.1| riboflavin-specific deaminase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188575264|ref|YP_001912193.1| riboflavin biosynthesis protein RibD [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|58428073|gb|AAW77110.1| riboflavin-specific deaminase; 5-amino-6-uracil reductase
           [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369232|dbj|BAE70390.1| riboflavin-specific deaminase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188519716|gb|ACD57661.1| riboflavin biosynthesis protein RibD [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 369

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 124/357 (34%), Positives = 185/357 (51%), Gaps = 8/357 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D R+M+ ALR +      T  NP V C+IV+DG+ +G G     G PHAEV AL  A
Sbjct: 9   SADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRAA 68

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPC+HYGR+PPCA  +IE G+ RVV  + DP  +V+G G   L   G
Sbjct: 69  GELARGATAYVTLEPCAHYGRTPPCALALIEAGVTRVVAAMADPFPQVNGGGFALLRDAG 128

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I ++  +M ++ +     +L+R    R  + +K+  S D    +A   S  ITG  ++  
Sbjct: 129 IEVLSGVMHAQARTLNQGFLSRVERGRPWLRVKLGASLDGRTALASGQSKWITGADARAD 188

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V   RA++ AIL G GTVLADDP +T RL   +    P+R++LD   +      I     
Sbjct: 189 VQRWRARAGAILTGAGTVLADDPSMTVRLGDDIACVPPLRVVLDAGLRTLACKNIRNGD- 247

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            AP + +  +     AL   +     ++    DL  +L +L  RG+  + VE GA ++ +
Sbjct: 248 -APTLYLHGDAVAATALDGAECAALPLHVGRFDLSAVLALLAERGINEVHVEAGATLSGA 306

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCLEY 354
            + + LVD +++Y + +++G+   P     G                  G D+ L Y
Sbjct: 307 LLQAGLVDELLVYMAPVLLGDTARPLLAGLGIETMAQRYELQLRDVRQLGQDLRLRY 363


>gi|13476938|ref|NP_108508.1| riboflavin-specific deaminase / reductase [Mesorhizobium loti
           MAFF303099]
 gi|14027701|dbj|BAB54294.1| riboflavin-specific deaminase / reductase [Mesorhizobium loti
           MAFF303099]
          Length = 376

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 168/365 (46%), Positives = 226/365 (61%), Gaps = 10/365 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQ 58
            ++ D RFM+AALR SR + G TSTNPSV  +IV+D     +++G GVTA GG PHAE +
Sbjct: 11  QTALDRRFMAAALRLSRRNAGRTSTNPSVGTIIVRDDGAGPMIVGTGVTAVGGRPHAETE 70

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           AL EAGE ARGATAYVTLEPC+H+GR+PPCA  ++  GI RVV    DPD RVSG+G   
Sbjct: 71  ALAEAGELARGATAYVTLEPCAHHGRTPPCANALVNAGIARVVGAASDPDPRVSGKGYAI 130

Query: 119 LSQKGIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L   GI+V ++++ +E    +  YL R + KR  +TLK+A+S D  IG  G G V ITG 
Sbjct: 131 LRAAGIVVVEKVLATEAAEQMAGYLIRSLRKRPEVTLKLALSSDGKIGRKGAGQVAITGE 190

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
           I++  V+L+RA+SDAIL+GIGT L DDP LT RL GL+  SP RIILD   +L   SK++
Sbjct: 191 IARRDVYLMRAESDAILIGIGTALEDDPALTVRLPGLENRSPARIILDRQIRLPEASKLV 250

Query: 238 KTALLAPVIIVTE-NDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLV 292
                 P+ +      DP    A  +  +  I  +  D    L +LL  L   G+ S+LV
Sbjct: 251 SGVDRVPLYVAACLEADPHRRSALERAGVRFIGTETHDGVVALPELLEDLAALGMASVLV 310

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           EGGA VA +F++  LVD I+L++    IGE GI SP++  ++   F  +R   FG D   
Sbjct: 311 EGGAQVAKAFLDEDLVDRIVLFQGPEAIGEDGIASPVDADHIPAGFRKLREMRFGEDSYA 370

Query: 353 EYIGK 357
           E++  
Sbjct: 371 EWVRD 375


>gi|254491989|ref|ZP_05105167.1| riboflavin biosynthesis protein RibD [Methylophaga thiooxidans
           DMS010]
 gi|224462804|gb|EEF79075.1| riboflavin biosynthesis protein RibD [Methylophaga thiooxydans
           DMS010]
          Length = 368

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 113/364 (31%), Positives = 180/364 (49%), Gaps = 19/364 (5%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             FM+ A++ +   +  T  NP V C+IVK+  +IG G     G  HAEV A++ AG  A
Sbjct: 5   EHFMARAIQLAERGLYTTDPNPRVGCVIVKNDEIIGEGWHMRAGEGHAEVNAIQAAGHAA 64

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            GA  YVTLEPCSH+GR+PPC   +I   ++RV V + DP+  VSG G+  L Q G+ V 
Sbjct: 65  EGADCYVTLEPCSHFGRTPPCVDALITAKVKRVFVAMTDPNPVVSGSGITRLRQAGVEVH 124

Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++ ++ +     +  R    +  I  K+A+S D    MA   S  ITG  ++  V  L
Sbjct: 125 TDILAAQSEKLNPGFCQRMRIGKPFIRSKLAMSLDGRTAMASGESKWITGPEARADVQKL 184

Query: 187 RAQSDAILVGIGTVLADDPELTCRLN---------GLQEHSPMRIILDPHFKLSLDSKII 237
           RA+S AI+ GIGTVLADDP L  R           G +   P+R+++D   ++  +++I+
Sbjct: 185 RARSSAIMTGIGTVLADDPLLNVRPEQSDNTWYPQGQKVRQPLRVVVDSKMRMPENARIL 244

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
           +      V++ T  D    A    +  +     D  DL  L+++L  R V  L+VE G  
Sbjct: 245 QEKR---VLLATAQD--KKAPNGAESIVLPEDGDIIDLTALMSVLAQREVNELMVEAGGV 299

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCLE 353
           +  + + +RL+D +++Y +  ++G+         G        +         G D  + 
Sbjct: 300 LNGAMLKARLIDELVIYMAPKIMGDMARGVFHLPGMETMAQNISLNITDMRPIGKDWRIT 359

Query: 354 YIGK 357
            I +
Sbjct: 360 AIPE 363


>gi|21230168|ref|NP_636085.1| riboflavin-specific deaminase/5-amino-6-uracil reductase
           [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66769842|ref|YP_244604.1| riboflavin-specific deaminase/5-amino-6-uracil reductase
           [Xanthomonas campestris pv. campestris str. 8004]
 gi|188993059|ref|YP_001905069.1| Riboflavin biosynthesis protein RibD
           (Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-[5-phosphoribosylamino]uracil
           reductase) [Xanthomonas campestris pv. campestris str.
           B100]
 gi|21111703|gb|AAM40009.1| riboflavin-specific deaminase/5-amino-6-uracil reductase
           [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66575174|gb|AAY50584.1| riboflavin-specific deaminase/5-amino-6-uracil reductase
           [Xanthomonas campestris pv. campestris str. 8004]
 gi|167734819|emb|CAP53029.1| Riboflavin biosynthesis protein RibD
           (Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-[5-phosphoribosylamino]uracil
           reductase) [Xanthomonas campestris pv. campestris]
          Length = 364

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 126/360 (35%), Positives = 186/360 (51%), Gaps = 8/360 (2%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M VS+ + R+M+ ALR +      T  NP V C+IV+DG  +G G     G PHAEV AL
Sbjct: 1   MSVSADNHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGACVGEGFHQRAGGPHAEVFAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE+ARGATAYVTLEPC+HYGR+PPCA  +I  G+ RVV  + DP  +V+G G   L 
Sbjct: 61  RAAGEQARGATAYVTLEPCAHYGRTPPCALALIAAGVTRVVAAMADPFPQVNGGGFTLLR 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI +   +ME++ +     +L+R    R  + +K+  S D    MA   S  ITG  +
Sbjct: 121 DAGIQVHSGVMEAQARALNQGFLSRVERGRPWVRVKLGASLDGRTAMASGESKWITGADA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238
           +  V   RA++  IL G GTVLADDP +T RL        P+R++LD   +    + I +
Sbjct: 181 RADVQRWRARAGVILTGAGTVLADDPSMTVRLGEDTPCVPPLRVVLDAGLRTLACANIRQ 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
               AP + +   D    A    +     ++    DL  +L  L  RG+  + VE GA +
Sbjct: 241 GD--APTLYLHGADVTAPAFDGAEFAAMPLHAGRFDLAAVLASLAERGINEVHVEAGATL 298

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLEY 354
           + + + + LVD +++Y + +++GE   P     G            +   + G D+ L Y
Sbjct: 299 SGALLQAGLVDELLVYMAPVLLGETARPLLAGLGIDTMAQRHALQLLDVRHIGQDLRLRY 358


>gi|189500554|ref|YP_001960024.1| riboflavin biosynthesis protein RibD [Chlorobium phaeobacteroides
           BS1]
 gi|189495995|gb|ACE04543.1| riboflavin biosynthesis protein RibD [Chlorobium phaeobacteroides
           BS1]
          Length = 371

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 115/357 (32%), Positives = 178/357 (49%), Gaps = 13/357 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG--E 65
            R+MS  L  +    G  S NP V  L+V DG +IG G     G PHAEV A+      E
Sbjct: 13  ERYMSRCLELAGKGAGYVSPNPMVGSLLVLDGQIIGEGYHERYGGPHAEVNAIASVKDSE 72

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           + R +T YV LEPCSH+G++PPC+  II+  I RVVV   DP   V+GRG+Q L   G+ 
Sbjct: 73  QLRESTLYVNLEPCSHHGKTPPCSDLIIQKNIPRVVVACRDPHRMVAGRGIQKLLDAGVE 132

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +++ ++E        A++   V+    ++LK+  + D  I      S  ITG  +++ VH
Sbjct: 133 VIEGVLEERSLKLNEAFMKSHVKNIPFVSLKLGQTLDGKIATVNGLSKWITGQPARDHVH 192

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR++ DA++ G GT++ADDP LT R   L   +P+R++LD   +L     +        
Sbjct: 193 FLRSRYDAVMTGSGTIVADDPLLTVR--HLPGRNPLRVVLDRRLQLPETMNVYNGEAATI 250

Query: 245 VIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
           V      +        + K + ++         DL ++L +L   GV S+ VE G+ ++ 
Sbjct: 251 VFTSDAGETTGRRERLQDKGVEVVSVTERNGRLDLDEVLHVLHANGVLSVFVEAGSRLSG 310

Query: 301 SFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           S + S LVD I LY +  + G  G     P  ++      +       +FG+D+ LE
Sbjct: 311 SLLQSGLVDKIYLYVAPKIFGGDGLDSFAPLGVDSPQGAISLRFESPVFFGNDLLLE 367


>gi|325129557|gb|EGC52381.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
           OX99.30304]
          Length = 369

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 128/367 (34%), Positives = 187/367 (50%), Gaps = 13/367 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +
Sbjct: 2   FSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   
Sbjct: 62  AGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLESA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++ 
Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V +LRA+S A+L GIGTVLAD+P L  R        P RI+LD   +L LDS ++ T  
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPLDSHLL-TDG 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGG 295
            +P  I T   +      +R+     I           DL  L+ +L   G   ++VE G
Sbjct: 240 QSPTYIATLERNEDRLHPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAG 299

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           + +  +F+   L D I+LYRS  ++G G     +P           +  V  +  G D+ 
Sbjct: 300 SELTSAFLAEDLADEIVLYRSPKILGSGKDLLSLPENRAALSAPPLWTPVSSEILGHDIK 359

Query: 352 LEYIGKN 358
             +   +
Sbjct: 360 TVFRKND 366


>gi|325133593|gb|EGC56254.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
           M13399]
          Length = 369

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 130/365 (35%), Positives = 188/365 (51%), Gaps = 11/365 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  ALR +      TS NP V C+I     V+G+G     G PHAEV AL +
Sbjct: 2   FSDTDISMMETALRLAALGRFSTSPNPRVGCVIAHGSQVVGQGFHVKAGEPHAEVHALHQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   
Sbjct: 62  AGEMAQGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++ 
Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V +LRA+S A+L GIGTVLAD+P L  R        P RI+LD   +L LDS ++    
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPLDSHLLTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGA 296
               I   E D+  L    +  ++ I+          DL  L+ +L   G+  L+VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYRKHAHVRILMPSETAGGKIDLNSLMRLLADEGIGELIVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +  +F+   L D I+LYRS  ++G G     +P           +M V  +  G D+  
Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGSGKDLFSLPENRAALSAPPLWMPVSTEILGHDIKT 360

Query: 353 EYIGK 357
            +   
Sbjct: 361 VFRKN 365


>gi|207728168|ref|YP_002256562.1| riboflavin biosynthesis bifunctional protein ribd :
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Ralstonia solanacearum MolK2]
 gi|206591413|emb|CAQ57025.1| riboflavin biosynthesis bifunctional protein ribd :
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Ralstonia solanacearum MolK2]
          Length = 370

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 123/362 (33%), Positives = 179/362 (49%), Gaps = 13/362 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S FD   M  AL  +   +  T+ NP V C++V+D  +IG G T   G  HAE+QA+++
Sbjct: 2   FSDFDHAMMQRALALAENGLFTTTPNPRVGCVLVRDDTIIGEGFTQPPGQDHAEIQAIKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + RGATAYVTLEPCSH+GR+PPCA  ++E GI RVV  ++DP+  VSGRGLQ L
Sbjct: 62  AQARGHDVRGATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPAVSGRGLQKL 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            + GI +   ++E E +     +++R       + +K+  S D    +    S  IT   
Sbjct: 122 REAGIDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITEAE 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++N  H  RA++ AIL GIGTV  D+P LT R        P RI++D    + LD+ I+ 
Sbjct: 182 ARNDGHRWRARACAILTGIGTVREDNPRLTVR-AIPTPRQPRRILIDSGLDVPLDAHILT 240

Query: 239 -TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVE 293
                 P +I     +     A  +    +I         DL  +L  L  R +  L VE
Sbjct: 241 ADDHREPTLIFAARPEAGRMRALAEHGAEVILLPNADGKVDLPAMLRELGRREINELHVE 300

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350
            G  +  S +   LVD I++Y +  V+G G       PL+       F        G D+
Sbjct: 301 AGYKLNGSLLREGLVDEILVYLAPKVLGSGQGMFNLGPLQSLEGAAEFFFHDITRVGGDL 360

Query: 351 CL 352
            +
Sbjct: 361 RI 362


>gi|294648973|ref|ZP_06726421.1| riboflavin biosynthesis protein RibD [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292825108|gb|EFF83863.1| riboflavin biosynthesis protein RibD [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 366

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 125/366 (34%), Positives = 194/366 (53%), Gaps = 22/366 (6%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M  A+  +R     T  NP+V C+IVKDG ++G G     G PHAEV AL +AGE A
Sbjct: 13  QYWMQRAIDLARLGQYSTKPNPNVGCVIVKDGQILGEGFHPKAGQPHAEVFALRQAGENA 72

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           + AT YVTLEPC+HYGR+PPCA+ +++  +++VV+   DP+  V+G+G++ L   GI V+
Sbjct: 73  KDATVYVTLEPCAHYGRTPPCAEALVKAQVKKVVIACSDPNPLVAGKGVKILQDAGIEVE 132

Query: 128 RMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             + +E    L+  +L        ++ LKIA S D    MA   S  ITG +++  V   
Sbjct: 133 TGVCTENAKGLNLGFLKAMSTGLPYVRLKIASSLDGRTAMASGESKWITGTLARQDVQHW 192

Query: 187 RAQSDAILVGIGTVLADDPELTCR-LNGLQEH---SPMRIILDPHFKLSLDSKIIKTALL 242
           RA S A++ GI TVLADD EL  R L G+  +    P RIILD   +L L +KI+K    
Sbjct: 193 RAISGAVITGIQTVLADDCELNVRVLEGVDLYTVVQPKRIILDRQGQLPLTAKILKNPE- 251

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHS 301
             V+++T              ++ +I    + L +LL  L  +  +  +LVE GA ++ +
Sbjct: 252 -TVMVMT-------PFRQELADLGVIQLSLQPLNQLLQTLSQQYQIYDVLVEAGATLSTA 303

Query: 302 FINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           F+   LVD +I Y +  ++G+       +   +   ++ F  V     G D+ L  +   
Sbjct: 304 FLQQGLVDEMISYVAPTLLGQSARAMFNAEFSKMAEQRRFELVDVTQLGQDIRLRLLP-- 361

Query: 359 LCLQEL 364
             +QE+
Sbjct: 362 --IQEM 365


>gi|83746190|ref|ZP_00943244.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Ralstonia solanacearum UW551]
 gi|207744096|ref|YP_002260488.1| riboflavin biosynthesis bifunctional protein ribd :
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Ralstonia solanacearum IPO1609]
 gi|83727156|gb|EAP74280.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Ralstonia solanacearum UW551]
 gi|206595500|emb|CAQ62427.1| riboflavin biosynthesis bifunctional protein ribd :
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Ralstonia solanacearum IPO1609]
          Length = 370

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 124/362 (34%), Positives = 179/362 (49%), Gaps = 13/362 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S FD   M  AL  +   +  T+ NP V C++V+D  +IG G T   G  HAE+QA+++
Sbjct: 2   FSDFDHAMMQRALALAENGLFTTTPNPRVGCVLVRDDTIIGEGFTQPPGQDHAEIQAIKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + RGATAYVTLEPCSH+GR+PPCA  ++E GI RVV  ++DP+  VSGRGLQ L
Sbjct: 62  AQARGHDVRGATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPAVSGRGLQKL 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            + GI +   ++E E +     +++R       + +K+  S D    +    S  IT   
Sbjct: 122 REAGIDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITEAE 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++N  H  RA++ AIL GIGTV  D+P LT R        P RI++D    + LD+ I+ 
Sbjct: 182 ARNDGHRWRARACAILTGIGTVREDNPRLTVR-AIPTPRQPRRILIDSALDVPLDAHILT 240

Query: 239 -TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVE 293
                 P +I     +     A  K    +I         DL  +L  L  R +  L VE
Sbjct: 241 ADDHREPTLIFAARPEAGRMRALAKHGAEVILLPNADGKVDLPAMLRELGRREINELHVE 300

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350
            G  +  S +   LVD I++Y +  V+G G       PL+       F        G D+
Sbjct: 301 AGYKLNGSLLREGLVDEILVYLAPKVLGSGQGMFNLGPLQSLEGAAEFFFHDITRVGGDL 360

Query: 351 CL 352
            +
Sbjct: 361 RI 362


>gi|300692257|ref|YP_003753252.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
           deaminase (N-terminal);
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Ralstonia solanacearum PSI07]
 gi|299079317|emb|CBJ51989.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
           deaminase (N-terminal);
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Ralstonia solanacearum PSI07]
          Length = 370

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 124/362 (34%), Positives = 180/362 (49%), Gaps = 13/362 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S FD   M  AL  +   +  T+ NP V C++V+D  +IG G T   G  HAE+QA+++
Sbjct: 2   FSDFDHAMMQRALALAENGLFTTTPNPRVGCVLVRDDTIIGEGFTQPAGQDHAEIQAIKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + RGATAYVTLEPCSH+GR+PPCA  ++E G+ RVV  ++DP+  VSGRGLQ L
Sbjct: 62  AQARGHDVRGATAYVTLEPCSHFGRTPPCADRLVEAGVARVVAAMEDPNPAVSGRGLQKL 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            + GI +   ++E E +     +++R       + +K+  S D    +    S  IT   
Sbjct: 122 REAGIDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITETE 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++N  H  RA++ AIL GIGTV  D+P LT R        P RI++D    + LD+ I+ 
Sbjct: 182 ARNDGHRWRARACAILTGIGTVREDNPRLTVR-AIPTPRQPRRILVDSGLDVPLDAHILT 240

Query: 239 -TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVE 293
                AP +I     +     A  K    +I         DL  +L  L  R +  L VE
Sbjct: 241 ADDHHAPTLIFAARPEAGRMRALAKHGAEVILLPNADGKVDLPAMLRELGRREINELHVE 300

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350
            G  +  S +   LVD I++Y +  V+G G       PL+       F        G D+
Sbjct: 301 AGYKLNGSLLREGLVDEILVYLAPKVLGSGQGMFNLGPLQSLEGAAAFFFHDISRVGGDL 360

Query: 351 CL 352
            +
Sbjct: 361 RI 362


>gi|302879548|ref|YP_003848112.1| riboflavin biosynthesis protein RibD [Gallionella capsiferriformans
           ES-2]
 gi|302582337|gb|ADL56348.1| riboflavin biosynthesis protein RibD [Gallionella capsiferriformans
           ES-2]
          Length = 366

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 124/365 (33%), Positives = 193/365 (52%), Gaps = 14/365 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           VS+ D+R+M+ AL+ +   +  TS NP V C++V+DG ++G G     G PHAEV AL +
Sbjct: 2   VSAEDSRWMAQALQLAERGLYSTSPNPRVGCVLVRDGNLLGAGWHKKAGEPHAEVYALLD 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ A GATAYVTLEPCSHYGR+PPC   +I  G+ RVVV + DP+ +V+GRG+  L   
Sbjct: 62  AGDAAHGATAYVTLEPCSHYGRTPPCCDALIHAGVARVVVAMQDPNPQVAGRGIAKLRAA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   +ME+  +     +  R       +  K+ +S D    ++   S  ITG  ++ 
Sbjct: 122 GISVDCGLMEAAARELNAGFCARMTRGLPQVRSKVGMSLDGRTALSNGVSQWITGADARL 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V   RA+S A+L GI T+LADD +L  R   + E  P R++LD H ++ LD++I++   
Sbjct: 182 DVQHWRARSCAVLTGINTILADDAQLNVREIDV-ERQPKRVVLDSHLRMPLDARILQGG- 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAA 297
              V+I     D       ++    ++         DL  ++  L  RG   +LVE GA 
Sbjct: 240 ---VLIYAALRDDHKIERLQQAGAEVVLLPGTDGRVDLPAVMRDLASRGCNEILVEAGAV 296

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG--GIPSPLEEGYLEKN--FMCVRRDYFGSDVCLE 353
           +  + + + LVD ++LY S  ++G    GI +  E   L++            G D+ + 
Sbjct: 297 LNGALLRAELVDEMLLYISPQLLGSSARGIAALGELTALDQRVDLKWQDVRQVGRDLRIT 356

Query: 354 YIGKN 358
              +N
Sbjct: 357 VTVRN 361


>gi|330988221|gb|EGH86324.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 378

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 128/364 (35%), Positives = 185/364 (50%), Gaps = 20/364 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            ++ D  +M+ AL  +R  +  T  NP V C+IV+DG ++G G     G PHAEV AL +
Sbjct: 5   QAALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQ 64

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH GR+PPCA  ++  G+ RVV  + DP+  VSGRGL  L   
Sbjct: 65  AGELARGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPEVSGRGLLRLMNA 124

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++ESE +     +L R    + +I +K+A+S D    MA   S  ITG  +++
Sbjct: 125 GIGVQCGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARS 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRAQS  +L G  TVLAD   LT R + L              P+R+++D   ++ 
Sbjct: 185 AVQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLRVP 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVT 288
           LD+   +       ++VT            + +  +   D     DL+KL+  L  RGV 
Sbjct: 245 LDAPFFQAGSA---LVVTCAAASARGRYQEEGHEMLALADSAGHVDLRKLMGELATRGVN 301

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345
            +LVE G  +A +F    LVD   ++ +   +G    P    PL +         V+   
Sbjct: 302 EVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARPLLDLPLAQMSEALELNIVQMRA 361

Query: 346 FGSD 349
            G+D
Sbjct: 362 VGND 365


>gi|325127564|gb|EGC50487.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis N1568]
          Length = 369

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 126/367 (34%), Positives = 186/367 (50%), Gaps = 13/367 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +
Sbjct: 2   FSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   
Sbjct: 62  AGEMAQGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++ 
Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V +LRA+S A+L GIGTVLAD+P L  R        P RI+LD   +L  +S ++ T  
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPNSHLV-TDG 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGG 295
            +P  I T   +      +R+     I           DL  L+ +L   G   ++VE G
Sbjct: 240 QSPTYIATLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAG 299

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           + +  +F+   L D I+LYRS  ++G G     +P           +  V  +  G D+ 
Sbjct: 300 SELTSAFLAENLADEIVLYRSPKILGSGKDLLSLPENRAALSAPPLWTPVSSEILGHDIK 359

Query: 352 LEYIGKN 358
             +   +
Sbjct: 360 TVFRKND 366


>gi|237797512|ref|ZP_04585973.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331020362|gb|EGI00419.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 381

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 129/364 (35%), Positives = 183/364 (50%), Gaps = 20/364 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            ++ D  +M+ AL  +R  +  T  NP V C+IV+DG ++G G  A  G PHAEV AL +
Sbjct: 8   QAALDVHYMAHALELARKGLYSTHPNPRVGCVIVRDGQIVGEGWHARAGEPHAEVHALRQ 67

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH GR+PPCA  ++E G+ RVV  + DP+  VSGRGL  L   
Sbjct: 68  AGELARGATAYVTLEPCSHQGRTPPCADALVEAGLSRVVAAMQDPNPEVSGRGLLRLMNA 127

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E+E +     +L R    R +I +K+A+S D    MA   S  ITG  +++
Sbjct: 128 GIGVQCGVLENEARALNKGFLKRMETGRPYIRVKLAMSLDGRTAMASGESQWITGPEARS 187

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRAQS  +L G  TVL D   LT R   L              P+R+++D   ++ 
Sbjct: 188 AVQRLRAQSSVVLTGADTVLVDSARLTVRPEELGLSAELTALAAARPPLRVLIDGRLRVP 247

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVT 288
           LD+   +       ++VT              +  +   D     DL+KL+  L  RGV 
Sbjct: 248 LDAPFFQAGNA---LVVTCAAASARGRYQEDGHEMLALADSAGHVDLRKLMGELGARGVN 304

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345
            +LVE G  +A +F    LVD   ++ +   +G    P    PL +         V    
Sbjct: 305 EVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARPLLDLPLAQMSEALELNIVEMRA 364

Query: 346 FGSD 349
            G+D
Sbjct: 365 VGND 368


>gi|254804368|ref|YP_003082589.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           phosphoribosylamino uracil reductase [Neisseria
           meningitidis alpha14]
 gi|254667910|emb|CBA04065.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           phosphoribosylamino uracil reductase [Neisseria
           meningitidis alpha14]
          Length = 369

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 129/365 (35%), Positives = 187/365 (51%), Gaps = 11/365 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  ALR +      TS NP V C+I     V+G+G     G PHAEV AL +
Sbjct: 2   FSDTDISMMETALRLAALGRFSTSPNPRVGCVIAHGSQVVGQGFHVKAGEPHAEVHALHQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   
Sbjct: 62  AGEMAQGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++ 
Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V +LRA+S A+L GIGTVLAD+P L  R        P RI+LD   +L LDS ++    
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPLDSHLLTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGA 296
               I   E D+  L    +  ++ I+          DL  L+ +L   G+  L+VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYRKHAHVRILMPSETAGGKIDLNSLMRLLADEGIGELIVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +  +F+   L D I+LYRS  ++G G     +P           +  V  +  G D+  
Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGSGKDLFSLPENRAALSAPPLWTPVSSEILGHDIKT 360

Query: 353 EYIGK 357
            +   
Sbjct: 361 VFRKN 365


>gi|71735090|ref|YP_276623.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555643|gb|AAZ34854.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320322801|gb|EFW78894.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330413|gb|EFW86392.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330874037|gb|EGH08186.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 378

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 128/364 (35%), Positives = 186/364 (51%), Gaps = 20/364 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ D  +M+ AL  +R  +  T  NP V C+IV+DG ++G G     G PHAEV AL +
Sbjct: 5   LAALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQ 64

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH GR+PPCA  ++  G+ RVV  + DP+  VSGRGL  L   
Sbjct: 65  AGELARGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPEVSGRGLLRLMNA 124

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++ESE +     +L R    + +I +K+A+S D    MA   S  ITG  +++
Sbjct: 125 GIGVQCGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARS 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRAQS  +L G  TVLAD   LT R + L              P+R+++D   ++ 
Sbjct: 185 AVQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLRVP 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVT 288
           LD+   +       ++VT            + +  +   D     DL+KL+  L  RGV 
Sbjct: 245 LDAPFFQAGSA---LVVTCAAASARGRYQEEGHEMLALADSAGHVDLRKLMGELATRGVN 301

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345
            +LVE G  +A +F    LVD   ++ +   +G    P    PL +         V+   
Sbjct: 302 EVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARPLLDLPLAQMSEALELNIVQMRA 361

Query: 346 FGSD 349
            G+D
Sbjct: 362 VGND 365


>gi|254428944|ref|ZP_05042651.1| riboflavin biosynthesis protein RibD [Alcanivorax sp. DG881]
 gi|196195113|gb|EDX90072.1| riboflavin biosynthesis protein RibD [Alcanivorax sp. DG881]
          Length = 387

 Score =  346 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 125/383 (32%), Positives = 188/383 (49%), Gaps = 29/383 (7%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S+ D +FMS AL+ +R  +  T  NP V C++V+ G V+G G  A  G  HAE  AL
Sbjct: 1   MSFSAADHQFMSRALQLARHGLYTTDPNPRVGCVLVRGGAVVGEGFHARAGELHAERHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AG+ A+GATAYVTLEPCSH GR+ PCA  ++E G+ RVV  ++DP+ +V+G+GLQ L+
Sbjct: 61  AAAGDRAQGATAYVTLEPCSHTGRTGPCADALVEAGVARVVAAMEDPNPQVAGQGLQRLA 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI +   ++E++ +     ++ R   +R +I +KIA S D    MA   S  ITG  +
Sbjct: 121 DAGIAVASGLLETQARDLNPGFIARMTRQRPYIRIKIAASVDGRTAMASGESQWITGPAA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ------------------EHSPMR 221
           +  V  LRA+S A++ G+GTVLAD P  T R                          P+R
Sbjct: 181 REDVQRLRARSSAVVTGVGTVLADRPSYTVRPAQWTLADYHGSPGEHNQAGRDWVRQPLR 240

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKK 277
           +ILD   +   D  ++        ++V     P    A       +++        DL++
Sbjct: 241 VILDRTLRTPPDVPVVSAPGH--CLLVAGEQHPGRQNALESAGAEVMHLPASGSGIDLQQ 298

Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGY 333
           LL  L  R    +LVE GA +A +F+   L D I++Y +  ++G    P      L    
Sbjct: 299 LLIELNRRECNEVLVECGATLAGAFVREGLFDEILVYMAPALLGSSARPLLGLPQLASMS 358

Query: 334 LEKNFMCVRRDYFGSDVCLEYIG 356
            +           G D+ L  + 
Sbjct: 359 EKVALRWQDVRQIGDDLRLTLVP 381


>gi|325680426|ref|ZP_08159976.1| riboflavin biosynthesis protein RibD [Ruminococcus albus 8]
 gi|324107864|gb|EGC02130.1| riboflavin biosynthesis protein RibD [Ruminococcus albus 8]
          Length = 369

 Score =  345 bits (886), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 115/369 (31%), Positives = 175/369 (47%), Gaps = 16/369 (4%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
             FM AAL  +   +G  + NP V  +IV+DG +I  G     G  HAE  A  +    G
Sbjct: 4   EDFMQAALDSAENGMGFVNPNPMVGAVIVRDGKIIASGFHERYGSLHAERSAFAQCNKKG 63

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
               GA  YVTLEPC H+G+ PPC + I   GIR V +   DP+  VSG+G  +L  +GI
Sbjct: 64  INCAGADMYVTLEPCCHHGKQPPCTEAIAAHGIRHVYIGSSDPNPLVSGKGAAFLRSRGI 123

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            + + +++ +       +          +TLK A++ D         S  ITG  ++  V
Sbjct: 124 GVTEGVLKEKCDKLNEIFFKFITTGLPFVTLKYAMTLDGKTACYTGESKWITGETARRHV 183

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  R +  AI+ GIGTVLADDP LTCR+       P+R+I D H ++ LDS I++TA   
Sbjct: 184 HRERLRHAAIMAGIGTVLADDPLLTCRIE--NGRDPLRMICDTHLRIPLDSNIVRTAEKV 241

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           P +IV   +D   A A +     I+         DL  L+ +L  + + S+L+EGG  +A
Sbjct: 242 PTMIVCGEEDAQKADALKNAGCQIVCLPNGNGGTDLSALMKMLGEKKIDSVLIEGGGTLA 301

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEY 354
            S +   +VD ++ Y +  + G     +P+     +                  D+ +E 
Sbjct: 302 WSALECSIVDKVMAYTAPKIFGGKSPFTPVGGKGAKSPAKAFMLEDTTVTALDGDILIEG 361

Query: 355 IGKNLCLQE 363
             K  C ++
Sbjct: 362 RVKK-CSRD 369


>gi|162447960|ref|YP_001621092.1| riboflavin biosynthesis protein [Acholeplasma laidlawii PG-8A]
 gi|161986067|gb|ABX81716.1| riboflavin biosynthesis protein [Acholeplasma laidlawii PG-8A]
          Length = 357

 Score =  345 bits (886), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 116/355 (32%), Positives = 177/355 (49%), Gaps = 11/355 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           ++M  A   +    G  + NP V  +I+KDG VIG+G     G  HAEV A+  A E+  
Sbjct: 8   KYMKQAFNLAIKGEGFVNPNPLVGAVIIKDGKVIGKGYHKAFGQVHAEVDAINHATEDVA 67

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           GAT +VTLEPCSH+G+ PPCA  +IE GI+ V +   DP+  V  +G++ L   GI V  
Sbjct: 68  GATMFVTLEPCSHHGKQPPCAFKLIEKGIKEVYIANLDPNPLVYKQGVKVLEDAGIKVHY 127

Query: 129 MMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            +  + G      +      KR  + +K A++ D  +      S  IT   S+  VH LR
Sbjct: 128 GILDDLGLKVNDIFFHYITTKRPFVAMKYAMTLDGKLATKDFDSKWITNKKSRKYVHDLR 187

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            +  AILVG+ T++ DD +L  R +  +  +P+RIILDP  +    + ++KTA   P  I
Sbjct: 188 NKYSAILVGVNTIIKDDAKLDVRRS-KKSKNPVRIILDPKLQTPKSTYVVKTAKTQPTWI 246

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
           V+E  D     ++    + II     DL KL+TIL    + S+ +EGGA    SF+ + L
Sbjct: 247 VSETYD----QSYVDLGVKIIQMPTIDLDKLMTILGEAKIDSIFIEGGAYTHASFLEANL 302

Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
           V+ +  + +  +IG     +P+    +           V    F  D+ +E   K
Sbjct: 303 VNKVYAFIAPKIIGGKNALTPIGGEGVSLMKDAHVLKDVTYTQFDEDILIEGYFK 357


>gi|28199619|ref|NP_779933.1| riboflavin-specific deaminase [Xylella fastidiosa Temecula1]
 gi|182682363|ref|YP_001830523.1| riboflavin biosynthesis protein RibD [Xylella fastidiosa M23]
 gi|28057734|gb|AAO29582.1| riboflavin-specific deaminase [Xylella fastidiosa Temecula1]
 gi|182632473|gb|ACB93249.1| riboflavin biosynthesis protein RibD [Xylella fastidiosa M23]
 gi|307578645|gb|ADN62614.1| riboflavin biosynthesis protein RibD [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 364

 Score =  345 bits (886), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 123/357 (34%), Positives = 188/357 (52%), Gaps = 9/357 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S+ D R M  AL  +      T  NP V C+IV+DG V+G G     G PHAEV AL  
Sbjct: 4   FSADDHRHMERALCLAERGAYTTRPNPMVGCVIVRDGEVVGEGWHQRAGDPHAEVFALCA 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ ARGATAYVTLEPC+H GR+PPCA  +I+ G+RRVV  + DP   V+G G+  L   
Sbjct: 64  AGDRARGATAYVTLEPCAHSGRTPPCAMALIDAGVRRVVAAMVDPFPLVNGGGVTLLRAA 123

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +   +ME++ +     +L+R    R  + +K+  S D    +A   S  ITG  ++ 
Sbjct: 124 GVTVEHGLMEAQARALNRGFLSRVERGRPWVRIKLGSSLDGRTALASGESKWITGEAARA 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKT 239
            V   RA++ AIL G GTVLADDP LT RL G +     P+R++LD   +     K+   
Sbjct: 184 DVQRWRARASAILTGAGTVLADDPALTVRLGGEEGAFLPPLRVVLDSSLRSLSCVKVRD- 242

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
              AP + +         L     +         DL+ +L +L  RG+  + VE GA + 
Sbjct: 243 -GTAPTLYLHGFGVTSPVLQHVDFSEVQQRDAGLDLEAVLRLLGERGINEVQVEAGATLC 301

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCVRRDYFGSDVCL 352
            + +++ LVD +++Y + +++G+   P  + L+ G +++      +     G+D+ L
Sbjct: 302 GALLHAGLVDELLIYIAPLLLGDTARPLLAGLDIGRMDQCIGLKVLEVAQVGNDLRL 358


>gi|319409860|emb|CBY90173.1| riboflavin biosynthesis protein RibD [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (riboflavin-specific deaminase) and
           5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
           reductase) [Neisseria meningitidis WUE 2594]
          Length = 369

 Score =  345 bits (886), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 128/365 (35%), Positives = 184/365 (50%), Gaps = 11/365 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  ALR +      TS NP V C+I     V+G+G     G PHAEV AL +
Sbjct: 2   FSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQVVGQGFHVKAGEPHAEVHALHQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+G   L   
Sbjct: 62  AGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGFAMLEAA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++ 
Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V +LRA+S A+L GIGTVLAD+P L  R        P RI+LD   +L LDS ++    
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPLDSHLLTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGA 296
               I   E D+  L       +I I+          DL  L+ +L   G   ++VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +  +F+   L D I+LYRS  ++G G     +P           +  V  +  G D+  
Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGGGSGLFCLPENRAALSAPPLWTPVSSEILGHDIKT 360

Query: 353 EYIGK 357
            +   
Sbjct: 361 VFRKN 365


>gi|300704870|ref|YP_003746473.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
           deaminase (N-terminal);
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Ralstonia solanacearum CFBP2957]
 gi|299072534|emb|CBJ43884.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
           deaminase (N-terminal);
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Ralstonia solanacearum CFBP2957]
          Length = 370

 Score =  345 bits (886), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 123/362 (33%), Positives = 179/362 (49%), Gaps = 13/362 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S FD   M  AL  +   +  T+ NP V C++V+D  +IG G T   G  HAE+QA+++
Sbjct: 2   FSDFDHVMMQRALALAENGLFTTTPNPRVGCVLVRDDTIIGEGFTQPPGQDHAEIQAIKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + RGATAYVTLEPCSH+GR+PPCA  ++E GI RVV  ++DP+  VSGRGLQ L
Sbjct: 62  AQARGHDVRGATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPAVSGRGLQKL 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            + GI +   ++E E +     +++R       + +K+  S D    +    S  IT   
Sbjct: 122 REAGIDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITEAE 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++N  H  RA++ AIL GIGTV  D+P LT R        P RI++D    + LD+ I+ 
Sbjct: 182 ARNDGHRWRARACAILTGIGTVREDNPRLTVR-AIPTPRQPRRILIDSGLDVPLDAHILS 240

Query: 239 -TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVE 293
                 P +I     +     A  +    +I         DL  +L  L  R +  L VE
Sbjct: 241 ADDHREPTLIFAARPEAGRMRALAEHGAEVILLPNADGKVDLPAMLRELGRREINELHVE 300

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350
            G  +  S +   LVD I++Y +  V+G G       PL+       F        G D+
Sbjct: 301 AGYKLNGSLLREGLVDEILVYLAPKVLGSGQGMFNLGPLQSLEGAAEFFFHDITRVGGDL 360

Query: 351 CL 352
            +
Sbjct: 361 RI 362


>gi|89093485|ref|ZP_01166433.1| riboflavin biosynthesis protein RibD [Oceanospirillum sp. MED92]
 gi|89082175|gb|EAR61399.1| riboflavin biosynthesis protein RibD [Oceanospirillum sp. MED92]
          Length = 379

 Score =  345 bits (886), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 126/367 (34%), Positives = 196/367 (53%), Gaps = 19/367 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D R+M+ A+  ++  +  T+ NP V C++VKD +++G G     G  HAEV A+ +
Sbjct: 5   WSIADHRYMARAIVLAKQGLYTTNPNPRVGCVLVKDEVIVGEGFHFRAGEGHAEVNAMAQ 64

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RVV  + DP+ +V+GRG+Q L   
Sbjct: 65  AGDLAKGATAYVTLEPCSHYGRTPPCAEGLIKAGVNRVVCAMVDPNPQVAGRGIQMLESA 124

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI     ++E+E +     ++ R       ++LKIA S D    MA   S  ITG  +++
Sbjct: 125 GISAESGLLEAEARALNPGFIKRMETGLPFVSLKIATSLDGRTAMASGESKWITGAAARS 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--------EHSPMRIILDPHFKLSLD 233
            V  LRA+S AIL G+ ++L D+  LT R   L         +  P+R++LD + +  +D
Sbjct: 185 DVQKLRARSSAILTGVESILTDNSALTVRAEQLGLAQAEEIVKQQPLRVVLDSNLRTPID 244

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTIL-VGRGVT 288
           + I+        +I T + D V+    +     +I         DL  LL  L       
Sbjct: 245 ASILSQP--GRTLIATISKDAVVIEKLQAAGAEVIQMPANQGRVDLVALLKHLAGEEQCN 302

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDY 345
            LLVE GA +A +FI+++LVD + LY +  ++G    P+   PL +   +     +    
Sbjct: 303 ELLVETGATLAGAFIDAKLVDQLHLYMAMTLMGSSARPAFQLPLAKMSEQVRLKRMDMRM 362

Query: 346 FGSDVCL 352
            G D+ L
Sbjct: 363 LGDDMKL 369


>gi|312898694|ref|ZP_07758084.1| riboflavin biosynthesis protein RibD [Megasphaera micronuciformis
           F0359]
 gi|310620613|gb|EFQ04183.1| riboflavin biosynthesis protein RibD [Megasphaera micronuciformis
           F0359]
          Length = 371

 Score =  345 bits (885), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 115/319 (36%), Positives = 173/319 (54%), Gaps = 9/319 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  +R  +G TS NP+V C+IVKDG ++GRG     G PHAEV AL EA E+A+GA
Sbjct: 1   MEEALNLARMGLGYTSPNPTVGCVIVKDGEIVGRGYHHQAGTPHAEVWALREAKEKAKGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPC+HYG++PPCA+ +++ G+ +VV  + DP+  V+G+G   L   GI ++  +
Sbjct: 61  TVYVTLEPCAHYGKTPPCARALVKAGVAKVVCAMLDPNPLVAGKGAAILRNAGIPVIVGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M  E       ++   +  +  I +K+A S D         S  IT   ++ + H LR+ 
Sbjct: 121 MSKEAVKMNEVFIKNMIVHKPFIAVKLAQSLDGCTASRTGKSKWITNDTARQEGHYLRSL 180

Query: 190 SDAILVGIGTVLADDPEL---TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
            DAILVGI TV +D+P L   T R    +   P RIILD   ++ L + ++       +I
Sbjct: 181 YDAILVGINTVESDNPLLTSRTTRPGHERPKQPTRIILDSTGRIDLQALLVTDKQSPTII 240

Query: 247 IVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           + TE        A     + +I          DL  L+  L  +G+ S+L+EGG+ V  S
Sbjct: 241 VTTERCPESKRQALNTAGVEVIVAAADDEGRIDLNGLMDTLYKKGICSILIEGGSTVIGS 300

Query: 302 FINSRLVDSIILYRSQIVI 320
           F +  LVD + ++   I++
Sbjct: 301 FFDENLVDKLYVFTGHIIM 319


>gi|299067739|emb|CBJ38948.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
           deaminase (N-terminal);
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Ralstonia solanacearum CMR15]
          Length = 370

 Score =  345 bits (885), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 125/362 (34%), Positives = 178/362 (49%), Gaps = 13/362 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S FD   M  AL  +   +  T+ NP V C++V+D  VIG G T   G  HAE+QA+++
Sbjct: 2   FSDFDHAMMQRALALAENGLFTTTPNPRVGCVLVRDDTVIGEGFTQPAGHDHAEIQAIKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + RGATAYVTLEPCSH+GR+PPCA  +IE GI RVV  ++DP+  VSGRGLQ L
Sbjct: 62  AQARGHDVRGATAYVTLEPCSHFGRTPPCADRLIEAGIARVVTAMEDPNPTVSGRGLQRL 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            Q GI +   ++E E +     +++R       + +K+  S D    +    S  IT   
Sbjct: 122 RQAGIDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALNNGISQWITEAE 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H  RA++ AIL GIGTV  D+P LT R        P RI++D    + LD+ I+ 
Sbjct: 182 ARADGHRWRARACAILTGIGTVREDNPRLTVR-AIPTPRQPRRILIDSGLDVPLDAHILT 240

Query: 239 -TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVE 293
                 P +I     +     A  +    +I         DL  +L  L  R +  L VE
Sbjct: 241 ADGHHEPTLIFAARPEAGRMRALAEHGAEVILLPNADGKVDLPAMLRELGRREINELHVE 300

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350
            G  +  S +   LVD I++Y +  V+G G       PL+       F        G D+
Sbjct: 301 AGYKLNGSLLREGLVDEILVYLAPKVLGSGQGMFNLGPLQSLEGAAAFFFHDITRVGGDL 360

Query: 351 CL 352
            +
Sbjct: 361 RI 362


>gi|261393155|emb|CAX50767.1| riboflavin biosynthesis protein RibD [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (riboflavin-specific deaminase) and
           5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
           reductase)] [Neisseria meningitidis 8013]
          Length = 369

 Score =  345 bits (885), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 127/366 (34%), Positives = 186/366 (50%), Gaps = 13/366 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL+ +      TS NP V C+I     ++G+G     G PHAEV AL +
Sbjct: 2   FSETDISMMQNALKLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   
Sbjct: 62  AGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++ 
Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V +LRA+S A+L GIGTVLAD+P L  R        P RI+LD   +L LDS ++ T  
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPLDSHLL-TDG 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGG 295
            +P  I T   +      +R+     I           DL  L+ +L   G   ++VE G
Sbjct: 240 QSPTYIATLERNEDRLHPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAG 299

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           + +  +F+   L D I+LYRS  ++G G     +P           +  V  +  G D+ 
Sbjct: 300 SELTSAFLAEDLADEIVLYRSPKILGSGKDLLSLPENRAALSAPPLWTPVSSEILGHDIK 359

Query: 352 LEYIGK 357
             +   
Sbjct: 360 TVFRKN 365


>gi|262274779|ref|ZP_06052590.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Grimontia hollisae CIP 101886]
 gi|262221342|gb|EEY72656.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Grimontia hollisae CIP 101886]
          Length = 373

 Score =  345 bits (885), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 123/372 (33%), Positives = 187/372 (50%), Gaps = 26/372 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S FD++ M  A+  ++  +  T+ NP+V C+I +   ++G G     G PHAEV AL  
Sbjct: 2   FSIFDSQMMLRAIELAKRGIYTTAPNPNVGCVITQGDDIVGEGFHFRAGEPHAEVYALRA 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE+A GATAYVTLEPCSH+GR+PPCA  +I  G+ RVV  + DP+ +V+GRG+Q +   
Sbjct: 62  AGEKACGATAYVTLEPCSHHGRTPPCADALIAAGVSRVVCAMVDPNPKVAGRGIQRMRDA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   +M+++ +     ++         + LK+A S D    +A   S  ITG  ++ 
Sbjct: 122 GIQVDVGLMQAQAEALNPGFIKVMKTGLPFVQLKLASSIDGRTALANGQSQWITGAEARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V + RAQ+ AIL    TVL D+P L  R   L E             P+R+ILD H K+
Sbjct: 182 DVQVFRAQAGAILSTSQTVLDDNPSLNVRWAQLPETVKSVYQQDDVRQPVRVILDTHRKV 241

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRG 286
           S  + +        +IIVT  DD         +++ ++  + +D    L   L  L  +G
Sbjct: 242 SDSATLFSLDGD--IIIVTAKDDK----PSVNESVTVLTVEQQDGHLNLNSTLRALAAKG 295

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVR 342
           +  + VE GA +A S +N+ LVD +I+Y++  ++G         EG         F    
Sbjct: 296 IHHIWVEAGATLAGSLLNAGLVDEVIVYQAPKLMGSDSRGLVKLEGLTSMSQVPTFTLTD 355

Query: 343 RDYFGSDVCLEY 354
               G DV    
Sbjct: 356 VTRIGDDVRFRM 367


>gi|303258272|ref|ZP_07344279.1| riboflavin biosynthesis protein RibD [Burkholderiales bacterium
           1_1_47]
 gi|302859025|gb|EFL82109.1| riboflavin biosynthesis protein RibD [Burkholderiales bacterium
           1_1_47]
          Length = 363

 Score =  345 bits (885), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 118/362 (32%), Positives = 182/362 (50%), Gaps = 17/362 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S  D  +M  AL  ++        NP+V C+IVKD  +IG G T   G  HAEV AL +
Sbjct: 1   MSFSDCSYMRRALELAKKARFNCPPNPAVGCVIVKDRRIIGEGFTQKTGEAHAEVMALRD 60

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   GE   GAT YVTLEPCSHYGR+PPCA  +    + RVV  + DP+  V+G+GL+ L
Sbjct: 61  AASRGESVEGATVYVTLEPCSHYGRTPPCALALKNAKVARVVAALKDPNPLVAGKGLKML 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            + G+ +   +   E +     +L RQ E    +  K+A+S D    +A   S  IT   
Sbjct: 121 EEAGVKVECGLEAEEAEEINRGFLKRQREGMPWVRTKMAMSVDGNTALANGKSQWITSEE 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H  R  S A+L G+GTVLAD+P++T R  G+    P+++++D +  L+ D KI +
Sbjct: 181 ARADGHFWRGISGAVLTGLGTVLADNPQMTARFEGVT-RQPLKVVVDSNLSLNPDLKIFQ 239

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294
                  ++V    D V A  F  + + +I    +    DL+ L+  L  R +  + VE 
Sbjct: 240 GG---KTLLVCARYDIVRAENFESQGVEVIELPGKDGKVDLRALMRELAKREINDVHVEA 296

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDV 350
           GA +  +     L+D  ++Y + + +G+G     +PS  ++               G DV
Sbjct: 297 GARLNGALAMEGLIDEYLIYVAPVFLGDGRRLLDLPS-FKDLCEGVALEFTDIQKVGPDV 355

Query: 351 CL 352
            L
Sbjct: 356 RL 357


>gi|330505155|ref|YP_004382024.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pseudomonas
           mendocina NK-01]
 gi|328919441|gb|AEB60272.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pseudomonas
           mendocina NK-01]
          Length = 371

 Score =  345 bits (885), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 126/369 (34%), Positives = 182/369 (49%), Gaps = 14/369 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S  D  FM+ ALR +R  +  T  NP V C+IV+DG ++G G  A  G PHAEV AL +
Sbjct: 1   MSEHDQLFMARALRLARKGLYSTHPNPRVGCVIVRDGEIVGEGWHARAGEPHAEVHALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG++ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+ +V+G GL  L   
Sbjct: 61  AGDKARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPQVAGNGLLRLMNA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++ESE +     ++ R       + +K A+S D    MA   S  ITG  ++ 
Sbjct: 121 GIEVRSGVLESEARALNAGFIKRMETGLPFVRVKSAMSLDGRTAMASGESQWITGPAARA 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
           +V  LRAQS  +L G  TVLADD  LT R + L          Q   P+R+++D   ++ 
Sbjct: 181 EVQRLRAQSSVVLSGADTVLADDARLTVRPDELGLGAELTALAQRRPPLRVLVDGRLRVP 240

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
           +     +                       +           DL+KLL  L GRGV  +L
Sbjct: 241 VSKAFFQVGPALVATCAAAAARDRYLADGHELLAVPGSNGHVDLRKLLLELAGRGVNEVL 300

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGS 348
           VE G  +A +F  + LVD   ++ +  ++G    P    PL           +     G 
Sbjct: 301 VEAGPRLAGAFARAGLVDEYRIFVAPKLLGSHARPLLDLPLNRMAEAPELQILDIRAVGD 360

Query: 349 DVCLEYIGK 357
           D  +  + K
Sbjct: 361 DWQITALPK 369


>gi|17545434|ref|NP_518836.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Ralstonia solanacearum GMI1000]
 gi|17427726|emb|CAD14245.1| probable riboflavin biosynthesis bifunctional ribd :
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           oxidoreductase protein [Ralstonia solanacearum GMI1000]
          Length = 370

 Score =  345 bits (885), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 123/362 (33%), Positives = 178/362 (49%), Gaps = 13/362 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S FD   M  AL  +   +  T+ NP V C++V+D  VIG G T   G  HAE+QA+++
Sbjct: 2   FSDFDHAMMQRALALAENGLFTTTPNPRVGCVLVRDDTVIGEGFTQPAGQDHAEIQAIKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + RGATAYVTLEPCSH+GR+PPCA  ++E GI RVV  ++DP+  VSGRGLQ L
Sbjct: 62  AQARGHDVRGATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPTVSGRGLQRL 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            + GI +   ++E E +     +++R       + +K+  S D    +    S  IT   
Sbjct: 122 REAGIDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGISQWITEAE 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H  RA++ AIL GIGTV  D+P LT R        P RI++D    + LD+ I+ 
Sbjct: 182 ARADGHRWRARACAILTGIGTVREDNPRLTVR-AIPTPRQPRRILIDSGLDVPLDAHILT 240

Query: 239 -TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVE 293
                 P +I     +     A  +    +I         DL  +L  L  R +  L VE
Sbjct: 241 ADGHHEPTLIFAARPEAGRMRALAEHGAEVILLPNADGKVDLPAMLRELGRREINELHVE 300

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350
            G  +  S +   LVD I++Y +  V+G G       PL+       F        G D+
Sbjct: 301 AGYKLNGSLLREGLVDEILVYLAPKVLGSGQGMFNLGPLQSLEGAAAFFFHDITRVGGDL 360

Query: 351 CL 352
            +
Sbjct: 361 RI 362


>gi|86605105|ref|YP_473868.1| riboflavin biosynthesis protein RibD [Synechococcus sp. JA-3-3Ab]
 gi|86553647|gb|ABC98605.1| riboflavin biosynthesis protein RibD [Synechococcus sp. JA-3-3Ab]
          Length = 371

 Score =  344 bits (884), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 110/363 (30%), Positives = 182/363 (50%), Gaps = 11/363 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D ++M   L  +R      S NP VAC+IV+   V+G GV    G PHAEV AL++AG
Sbjct: 4   DADRQWMERCLSLARSTPQRPSPNPRVACVIVRGDQVVGEGVHLGAGQPHAEVLALQQAG 63

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
             A+GAT YV LEPC+HYGR+PPC + I+  GIRRVVV + DP+  V+G+G++ L + G+
Sbjct: 64  SLAKGATLYVNLEPCNHYGRTPPCTEAILAAGIRRVVVGMQDPNPLVAGKGIRRLQEAGV 123

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++E E +     +    V+KR    LK A++ D     A   S  I+  +++  V
Sbjct: 124 EVTVGVLEQECQELNEGFAFAIVQKRCFGLLKYAMTLDGKSAAATGHSRWISNPLAREWV 183

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  RA  DA++VG GTV  D+P LTCRL       P+R++L     L   + + +     
Sbjct: 184 HRQRAWHDAVIVGSGTVWHDNPHLTCRLPDFHGSQPLRVVLSRSLNLPPLAHLWRAEEAP 243

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            ++I    +   L  +  K+ + +++ D     +   +L  RG  S L E G  +A + +
Sbjct: 244 TLVITEATEAHPLWGSLAKQGVELLHLDQVTPAQAAQVLFERGCLSALWECGGTLAWAAL 303

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE---KNFMCVRRDYFGSDVCLEYIGKNLC 360
               +  +  + +  ++G    P+P+    +    +++  +          L+ +G N  
Sbjct: 304 KDGAIQKVAAFIAPKILGGADAPTPVAGEGIPDVNQSWQLLEPQ-------LQTVGDNWL 356

Query: 361 LQE 363
           +  
Sbjct: 357 ITG 359


>gi|330953126|gb|EGH53386.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae Cit 7]
          Length = 378

 Score =  344 bits (884), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 128/364 (35%), Positives = 184/364 (50%), Gaps = 20/364 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            ++ D  +M+ AL  +R  +  T  NP V C+IV++G ++G G     G PHAEV AL +
Sbjct: 5   QAALDVHYMARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHVRAGEPHAEVHALRQ 64

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH GR+PPCA  +IE G+ RVV  + DP+  VSGRGL  L   
Sbjct: 65  AGELARGATAYVTLEPCSHQGRTPPCADALIEAGVTRVVAAMQDPNPEVSGRGLLRLMNA 124

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++ESE +     +L R      ++ +K+A+S D    MA   S  ITG  +++
Sbjct: 125 GIGVQCGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARS 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRAQS  +L G  TVLAD   LT R + L              P+R+++D   ++ 
Sbjct: 185 AVQRLRAQSSVVLSGADTVLADKARLTVRPDELGLDAELTSLAAARPPLRVLIDGRLRVP 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVT 288
           LD+   +       ++VT            + +  +   D     DL++L+  L  RGV 
Sbjct: 245 LDAPFFQAGSA---LVVTCAAASARGRYQEEGHEMLALADSAGHVDLRRLMGELAARGVN 301

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345
            +LVE G  +A +F    LVD   L+ +   +G    P    PL +         V    
Sbjct: 302 EVLVEAGPRLAGAFARLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIVEMRA 361

Query: 346 FGSD 349
            G+D
Sbjct: 362 VGND 365


>gi|325206734|gb|ADZ02187.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
           M04-240196]
          Length = 369

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 128/366 (34%), Positives = 185/366 (50%), Gaps = 13/366 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +
Sbjct: 2   FSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+G   L   
Sbjct: 62  AGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGFAMLEAA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++ 
Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V +LRA+S A+L GIGTVLAD+P L  R        P RI+LD   +L LDS ++ T  
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPLDSHLL-TDG 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGG 295
            +P  I T   +      +R+     I           DL  L+ +L   G   ++VE G
Sbjct: 240 QSPTYIATLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAG 299

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVC 351
           + +  +F+   L D I+LYRS  ++G G     L E          +  V  +  G D+ 
Sbjct: 300 SELTSAFLAENLADEIVLYRSPKILGSGKDLFSLLENRAALSAPPLWTPVSSEILGHDIK 359

Query: 352 LEYIGK 357
             +   
Sbjct: 360 TVFRKN 365


>gi|289647764|ref|ZP_06479107.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 378

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 128/364 (35%), Positives = 185/364 (50%), Gaps = 20/364 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            ++ D  +M+ AL  +R  +  T  NP V C+IV+DG ++G G     G PHAEV AL +
Sbjct: 5   QAALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQ 64

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH GR+PPCA  ++  G+ RVV  + DP+  VSGRGL  L   
Sbjct: 65  AGELARGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPDVSGRGLLRLMNA 124

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++ESE +     +L R    + +I +K+A+S D    MA   S  ITG  +++
Sbjct: 125 GIGVQCGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARS 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRAQS  +L G  TVLAD   LT R + L              P+R+++D   ++ 
Sbjct: 185 AVQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAAPPPLRVLIDGRLRVP 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVT 288
           LD+   +       ++VT            + +  +   D     DL+KL+  L  RGV 
Sbjct: 245 LDAPFFQAGSA---LVVTCAAASARGRYQEEGHEMLALADSAGHVDLRKLMGELATRGVN 301

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345
            +LVE G  +A +F    LVD   ++ +   +G    P    PL +         V+   
Sbjct: 302 EVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARPLLDLPLAQMSEALELNIVQMRA 361

Query: 346 FGSD 349
            G+D
Sbjct: 362 VGND 365


>gi|104779848|ref|YP_606346.1| riboflavin biosynthesis protein RibD [Pseudomonas entomophila L48]
 gi|95108835|emb|CAK13531.1| Riboflavin biosynthesis protein RibD [Pseudomonas entomophila L48]
          Length = 375

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 122/358 (34%), Positives = 179/358 (50%), Gaps = 16/358 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            DA +M+ A+  +R  +  T  NP V C+IV+DG V+G G     G PHAEV AL +AGE
Sbjct: 7   LDAHYMARAVELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQAGE 66

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            ARGA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV  + DP+ +V+G GL+ L + GI 
Sbjct: 67  LARGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGNGLRRLREAGIE 126

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   ++E+E +     +L R       +  K+A+S D    MA   S  ITG  ++  V 
Sbjct: 127 VASGVLEAEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARAAVQ 186

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDS 234
            LRA+S  +L    +VL D+  +T R   L              P+R+++D   +L LD+
Sbjct: 187 RLRARSSVVLTSAQSVLQDNARMTVRGEELGLDSALTTLALSRPPLRVLVDGRLRLPLDA 246

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
              +      +++    DDP  A A  +        D  DL  LL  L  RGV  +L+E 
Sbjct: 247 PFFQAGPA--LVVTAAGDDPRYAAAGHELLNLPGDDDQVDLPALLRCLAERGVNEILLEA 304

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSD 349
           GA +  +F    LVD   L+ +   +G    P    PL +               G D
Sbjct: 305 GAGLVGAFARQGLVDEFQLFVAGTFLGSEARPLLDWPLSKMSEAPRLKITEMRAVGDD 362


>gi|294852128|ref|ZP_06792801.1| riboflavin biosynthesis protein RibD [Brucella sp. NVSL 07-0026]
 gi|294820717|gb|EFG37716.1| riboflavin biosynthesis protein RibD [Brucella sp. NVSL 07-0026]
          Length = 373

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 169/358 (47%), Positives = 229/358 (63%), Gaps = 7/358 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM A +R++R H GLT TNPSV  +IVKDG+++GRGVTA GG PHAE QAL E GE 
Sbjct: 15  DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPC+H+GR+PPCA+ ++  G+ RVVV   DPD RVSG+G   L + GI +
Sbjct: 75  ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++  +    L  YL R   KR  + LK+A+S D MIG  G G V ITG +S+ Q H+
Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD   +L L S+++++A   P+
Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254

Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
            +    + P     A       I+  +  D    L +LL  L  +G+ S+LVEGGA VA 
Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314

Query: 301 SFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           SF++ +LVD +I++RS +VIG   G+     E Y+   F  +RR  +  D C EY+  
Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETYIASEFKILRRMRYADDACAEYVRN 372


>gi|27380142|ref|NP_771671.1| riboflavin biosynthesis protein [Bradyrhizobium japonicum USDA 110]
 gi|27353296|dbj|BAC50296.1| riboflavin biosynthesis protein [Bradyrhizobium japonicum USDA 110]
          Length = 382

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 154/363 (42%), Positives = 211/363 (58%), Gaps = 11/363 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D RFM  AL   R   G T  NP+V  +IVKDG+++GRG T  GG PH E +AL  AG
Sbjct: 19  DADRRFMQLALALGRRGQGRTWPNPAVGAVIVKDGVIVGRGWTQPGGRPHGEPEALRRAG 78

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGAT YVTLEPCSH+G+SPPCA  +I  GI+RVV  ++DP+  V+G+G   L   GI
Sbjct: 79  EAARGATLYVTLEPCSHFGKSPPCADAVIAAGIKRVVAAIEDPNPEVAGQGHARLRAAGI 138

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   +  +E       +  R  ++R H+ LK+AVS D  IG AG   V ITG   +N+V
Sbjct: 139 TVDVGLCAAEAAFDHAGHFRRIRDRRPHVILKLAVSPDGKIGAAGGKPVAITGEAVRNRV 198

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           HLLRAQSDAILVGIGTVLADDP LTCRL G+   SP+R++LD   ++S  S+++++A   
Sbjct: 199 HLLRAQSDAILVGIGTVLADDPLLTCRLPGMAARSPVRVVLDQSLRMSAASQLVRSARET 258

Query: 244 PVIIV-TENDDPVLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAA 297
           P+ +V +E  +   A         II          DL  +L +L  +G++ L+VEGG+ 
Sbjct: 259 PLWVVGSELAEAAAATRLGAAGAQIIRVPPGNASGLDLPAVLHVLAEKGISRLMVEGGSR 318

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLE 353
           VA SF+ + LVD I L+R    +G  G+ +    PL +    + +     + F  D    
Sbjct: 319 VAASFVAADLVDEIWLFRGAEEVGSSGVDALDALPLSKITQSQAYKVHASETFDKDTLTI 378

Query: 354 YIG 356
           Y  
Sbjct: 379 YER 381


>gi|149202273|ref|ZP_01879246.1| riboflavin biosynthesis protein RibD [Roseovarius sp. TM1035]
 gi|149144371|gb|EDM32402.1| riboflavin biosynthesis protein RibD [Roseovarius sp. TM1035]
          Length = 364

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 139/362 (38%), Positives = 200/362 (55%), Gaps = 11/362 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++  DARFM+ AL   R  +G  + NP+V C+IV+ G ++GRG T+ GG PHAE QAL +
Sbjct: 1   MTGADARFMALALSLGRRGMGQCAPNPAVGCVIVQGGRIVGRGWTSPGGRPHAEPQALAQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYV+LEPC+H+G++PPCA+ +I  GI RVV   DD D RV+GRG   L   
Sbjct: 61  AGELARGATAYVSLEPCAHHGQTPPCAEALIAAGIARVVAPFDDNDPRVAGRGFAMLRAA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   +M  +    L  +L R    R  +TLK+A S D  I  A   S  ITG  ++ 
Sbjct: 121 GIEVRTGVMAEQAGRDLAGFLMRNEIGRPLVTLKLASSFDGRIATATGHSQWITGPEARR 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH LRA+ DA++VG GT  ADDP+LT R  G +   P+R+++     L L S + +TA 
Sbjct: 181 VVHGLRARHDAVMVGAGTARADDPQLTVRDMGAR-RQPVRVVVSRRLDLPLLSNLARTAR 239

Query: 242 LAPVIIVTEND-DPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGA 296
             P+ +      DP L  A++     ++ C+      D   +L  L   G+T +  EGG 
Sbjct: 240 DVPLWLCHGPHVDPALVKAWQGIGARLLPCEVTQGQVDPASVLHALGAEGLTRVFCEGGG 299

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
           A+A S +++ LVD ++ + +   IG  G+P      L      + +  V     G DV  
Sbjct: 300 ALAASLLSAGLVDELVGFTAGFAIGAEGLPGVGALGLARLDEAQRYRLVETRALGGDVMH 359

Query: 353 EY 354
            +
Sbjct: 360 RW 361


>gi|146341344|ref|YP_001206392.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Bradyrhizobium sp. ORS278]
 gi|146194150|emb|CAL78171.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Bradyrhizobium sp. ORS278]
          Length = 383

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 146/366 (39%), Positives = 204/366 (55%), Gaps = 12/366 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
               D RFM  AL   R   G T  NP+V  ++VKDG+++GRG T  GG PHAE +AL  
Sbjct: 17  QKDADRRFMQLALTLGRRGQGRTWPNPAVGAVVVKDGVIVGRGWTQPGGRPHAEPEALRR 76

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+GAT YVTLEPCSH+G+SPPCA  +I  GI RVV  V+DP+  V+ +G   L   
Sbjct: 77  AGEAAKGATLYVTLEPCSHFGKSPPCADAVIAAGISRVVSAVEDPNPEVAAQGHAKLRAA 136

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   +  ++ K     +  R  + R  + LK+AVS D+ I  AG   V ITG  ++ 
Sbjct: 137 GIQVEVGLCSADAKRDHAGHFRRIRDGRPQVILKLAVSADDKIAAAGSKPVAITGEAART 196

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +VHLLRAQSDAIL+G+ T +ADDP LTCRL G++  SP+R++LDP  +L   S++I++A 
Sbjct: 197 RVHLLRAQSDAILIGVRTAIADDPLLTCRLPGMEPRSPVRVVLDPMLRLPSASRLIQSAR 256

Query: 242 LAPVI-IVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEG 294
             P+  + +E  +P  A         +I    +      +   +L  L  +G+T L++EG
Sbjct: 257 TTPLWLVASEVAEPATATRLGAAGAQVIRVPPQADPSALEPPAVLKALAEKGITRLMIEG 316

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
           G+ VA SF+ S LVD I L R    IG  GI +    PL        +     +    D+
Sbjct: 317 GSRVASSFMQSGLVDEIWLLRGPREIGADGIAALDALPLTAITQSPAYRVRASETLDPDI 376

Query: 351 CLEYIG 356
              Y  
Sbjct: 377 LTIYER 382


>gi|49475527|ref|YP_033568.1| riboflavin biosynthesis protein ribD [Bartonella henselae str.
           Houston-1]
 gi|49238333|emb|CAF27557.1| Riboflavin biosynthesis protein ribD [Bartonella henselae str.
           Houston-1]
          Length = 365

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 148/366 (40%), Positives = 224/366 (61%), Gaps = 13/366 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGI-----VIGRGVTAYGGCPHAEVQALEEAGE 65
           M+AA+R +  HVGLT  NPSV  +I ++       ++G GVTA  G PHAEVQAL+ AG 
Sbjct: 1   MAAAIRLAERHVGLTGENPSVGTIIARNDENVGVYIVGYGVTAIQGRPHAEVQALQMAGS 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            A GATAYVTLEPCSHYG++ PC   +++ GI RVV+ + D D RV+GRG+  L   GI 
Sbjct: 61  LAHGATAYVTLEPCSHYGKTSPCVNTLLKSGISRVVIALTDLDKRVNGRGIALLRAAGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +++ ++  E    L  Y   + ++R  +TLK+A+S DN +G  G G + I+G  S  Q H
Sbjct: 121 VIEGVLAKEAFESLCNYWCIRKQQRCAVTLKMAISADNGVGKKGQGGIKISGTTSHAQTH 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
           +LRAQ++AILVGIGT+LADDP+L CRL G++ HSP+RIILD +  + L++K+++TA + P
Sbjct: 181 ILRAQNNAILVGIGTILADDPQLNCRLPGMEMHSPIRIILDANLCIPLNAKVVQTAKIIP 240

Query: 245 VIIVTEN--DDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAV 298
             ++ +         +A  +  +++   +  +       +L +L  RG+ S+L+EGG   
Sbjct: 241 TWVICDVNFSKKSKKIALEQYGVSVYSVEVSNGYMPPLTILQLLYQRGINSVLLEGGVKT 300

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
              F+N+  VD +I + + +++G+  I +P    YL + F  V    FG D   ++  K 
Sbjct: 301 GEIFLNAGCVDHLICFYAPVILGKDRIKAPHFGNYLSQ-FHEVETRMFGKDRFYKWRRKT 359

Query: 359 LCLQEL 364
           LC QEL
Sbjct: 360 LCSQEL 365


>gi|325141619|gb|EGC64081.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
           961-5945]
 gi|325141652|gb|EGC64113.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
           961-5945]
 gi|325141685|gb|EGC64145.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
           961-5945]
          Length = 369

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 129/365 (35%), Positives = 185/365 (50%), Gaps = 11/365 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +
Sbjct: 2   FSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALHQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   
Sbjct: 62  AGEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLAMLEAA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++ 
Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V +LRA+S A+L GIGTVLAD+P L  R        P RI+LD   +L LDS ++    
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPLDSHLLTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGA 296
               I   E D+  L       +I I+          DL  L+ +L   G   ++VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVCL 352
            +  +F+   L D I+LYRS  ++G G     L E          +  V  +  G D+  
Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGSGKDLFSLLENRAALSAPPLWTPVSSEILGHDIKT 360

Query: 353 EYIGK 357
            +   
Sbjct: 361 VFRKN 365


>gi|166710620|ref|ZP_02241827.1| riboflavin-specific deaminase; 5-amino-6-uracil reductase
           [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 369

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 123/357 (34%), Positives = 182/357 (50%), Gaps = 8/357 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D R+M+ ALR +      T  NP V C+IV+DG+ +G G     G PHAEV AL  A
Sbjct: 9   SADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRAA 68

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPC+HYGR+PPCA  +IE G+ RVV  + DP  +V+G G   L   G
Sbjct: 69  GELARGATAYVTLEPCAHYGRTPPCALALIEAGVTRVVAAMADPFPQVNGGGFALLRDAG 128

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I ++  +M ++ +     +L+R    R  + +K+  S D    +A   S  ITG  ++  
Sbjct: 129 IEVLSGVMHAQARTLNQGFLSRVERGRPWLRVKLGASLDGRTALASGQSKWITGADARAD 188

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTAL 241
           V   RA++ AIL G GTVLADDP +T RL        P+R++LD   +      I     
Sbjct: 189 VQRWRARAGAILTGAGTVLADDPSMTVRLGDDTACVPPLRVVLDAGLRTLACKNIRNGD- 247

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            AP + +  +     AL         ++    DL  +L +L  R +  + VE GA ++ +
Sbjct: 248 -APTLYLHGDAVAATALDGAAYAALPLHVGRFDLSAVLALLAERDINEVHVEAGATLSGA 306

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCLEY 354
            + + LVD +++Y + +++G+   P     G                  G D+ L Y
Sbjct: 307 LLQAGLVDELLVYMAPVLLGDTARPLLAGLGIETMAQRYELQLRDVRQLGQDLRLHY 363


>gi|83648598|ref|YP_437033.1| riboflavin biosynthesis protein RibD [Hahella chejuensis KCTC 2396]
 gi|83636641|gb|ABC32608.1| riboflavin biosynthesis protein RibD [Hahella chejuensis KCTC 2396]
          Length = 362

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 121/363 (33%), Positives = 188/363 (51%), Gaps = 17/363 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ ALR +   +  T  NP V C++VK+G+++G G     G  HAEV AL  AGE ARGA
Sbjct: 1   MARALRLAERGLYTTDPNPRVGCVLVKEGVIVGEGWHERAGEGHAEVNALRAAGESARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129
             YVTLEPCSHYGR+PPCA+ +++ G+RRV+  ++DP+  V+G+GL  L   G+  +   
Sbjct: 61  DCYVTLEPCSHYGRTPPCAEALVKAGVRRVIAAMEDPNPSVAGKGLALLRGAGVESEVGC 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M +E       +  R  + R  + +K+A S D    +    S  ITG  ++  V  LRA+
Sbjct: 121 MAAEAYELNLGFFKRMSDGRPWVRVKVASSLDGRSALHNGVSKWITGAAAREDVQKLRAR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE------HSPMRIILDPHFKLSLDSKIIKTALLA 243
           S A++ GIGT++AD+P L  R   L++        PMR+ LD   +   DS ++K     
Sbjct: 181 SSAVITGIGTIIADNPSLNVRGPELEQACNGKLRQPMRVALDSQLRFPADSNMLKLPGKI 240

Query: 244 PVIIVTENDDPVLALAF-RKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298
            ++  T+  +  LA       ++ ++         DLK LL+ L  R    +LVE GA +
Sbjct: 241 LLVACTDPSEGWLAQRQSSGADLEVLKLAGENGRIDLKALLSTLAARECNEVLVEAGANL 300

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEY 354
           A +F+   L D I  Y +  ++GE G P+ +   Y + +             G DV + +
Sbjct: 301 AGAFVAQGLADEIWTYTAPKLMGE-GRPAFVLPRYEQMDQVITLKLNDVRQVGDDVRMIW 359

Query: 355 IGK 357
             +
Sbjct: 360 RKE 362


>gi|256113297|ref|ZP_05454165.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 3
           str. Ether]
 gi|265994710|ref|ZP_06107267.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 3
           str. Ether]
 gi|262765823|gb|EEZ11612.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 3
           str. Ether]
          Length = 373

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 167/358 (46%), Positives = 228/358 (63%), Gaps = 7/358 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM A +R++R H GLT TNPSV  +IVKDG+++GRGVTA GG PHAE QAL E GE 
Sbjct: 15  DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPC+H+GR+PPCA+ ++  G+ RVVV   DPD RVSG+G   L + GI +
Sbjct: 75  ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++  +    L  YL R   KR  + LK+A+S D MIG  G G V ITG +S+ Q H+
Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD   +L L S+++++A   P+
Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLKQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254

Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
            +    + P     A       I+  +  D    L +LL  L  +G+ S+LVEGGA VA 
Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314

Query: 301 SFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           SF++ +LVD +I++ S +VIG   G+     E ++   F  +RR  +  D C EY+  
Sbjct: 315 SFLDEKLVDRLIIFLSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYVRN 372


>gi|115377134|ref|ZP_01464348.1| riboflavin biosynthesis protein RibD [Stigmatella aurantiaca
           DW4/3-1]
 gi|310822848|ref|YP_003955206.1| Riboflavin biosynthesis protein RibD [Stigmatella aurantiaca
           DW4/3-1]
 gi|115365843|gb|EAU64864.1| riboflavin biosynthesis protein RibD [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395920|gb|ADO73379.1| Riboflavin biosynthesis protein RibD [Stigmatella aurantiaca
           DW4/3-1]
          Length = 387

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 124/362 (34%), Positives = 188/362 (51%), Gaps = 11/362 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             FM  AL  +   +G TS NP+V  ++VK G +I RG     G  HAEV ALE AG  A
Sbjct: 29  EFFMRIALEEAAKGLGRTSPNPAVGAVLVKGGRIIARGYHKKAGTAHAEVVALEAAGPRA 88

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           RGA  Y TLEPC HYGR+ PC+Q II+ G+RRV+    DP+ +V+G+G+  L + G+ ++
Sbjct: 89  RGADLYTTLEPCDHYGRTGPCSQAIIDAGVRRVICGSSDPNPKVNGKGVARLKKAGVEVL 148

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +++ +       +         ++TLK AV+ D  +  A   S  +TG  +++ VH L
Sbjct: 149 TGVLQKDADQLNQPFFKVMTTGLPYVTLKAAVTLDGKLATATGDSRWVTGEAARHWVHQL 208

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R + D ILVG  TV  D+P+LT RL G     P+R+++D H +L     +      A VI
Sbjct: 209 RDKVDVILVGANTVRRDNPQLTTRLPGGGGKDPVRVVVDSHLRLKSTHTVFTQRSPARVI 268

Query: 247 IVT-ENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHS 301
           + T E+     A  F +  + +     R     LK LL  +   G   +LVEGGA +  S
Sbjct: 269 LATLEDPQGAKARRFTRLGVEVWQMPSRQGQVALKALLGRVAQEGFNHVLVEGGAEIYGS 328

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           F+  RL DS+ L+ +  +IG  G+    + G        +   +   D+  + +G++L L
Sbjct: 329 FLRERLADSLALFLAPKLIGSQGLSWSGDLGV-----KLMANAFSLKDLTFQQLGEDLLL 383

Query: 362 QE 363
           Q 
Sbjct: 384 QA 385


>gi|325266968|ref|ZP_08133639.1| riboflavin biosynthesis protein RibD [Kingella denitrificans ATCC
           33394]
 gi|324981709|gb|EGC17350.1| riboflavin biosynthesis protein RibD [Kingella denitrificans ATCC
           33394]
          Length = 369

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 122/363 (33%), Positives = 182/363 (50%), Gaps = 12/363 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  DA  M  A+  +      TS NP V C+I   G ++G+G     G PHAEV AL +
Sbjct: 8   FSELDAAHMRRAIELAWLGRFSTSPNPRVGCVIAHGGQIVGQGFHVQAGFPHAEVHALRQ 67

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ ARGATAYVTLEPCSH+GR+PPCA+ +I  G+ RVV+ + DP+  V+G+G+  L   
Sbjct: 68  AGDLARGATAYVTLEPCSHHGRTPPCAEGLIAAGVARVVIAMGDPNPLVAGKGIALLQAA 127

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++  E +     +L+R   +R  ++LKIA S D   G++   S  ITG  ++ 
Sbjct: 128 GISVQCGLLADEARALNRGFLSRIERRRPFVSLKIAASLDGKTGLSDGRSQWITGEEARA 187

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V   RAQS A+L G+GTVL D+P L  R        P+R+ILD   +    S +I+   
Sbjct: 188 DVQRQRAQSCAVLTGVGTVLHDNPRLNVR-QFPIVRQPLRVILDSRLRTPESSHMIQDGQ 246

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAV 298
                I T    P L  A+   ++     +      L  +L  L   G+  L+VE G  +
Sbjct: 247 A--TQIFTLQKQPALFAAYPNVSVRQCAANADGRIALPDVLARLAEDGIGELMVEAGCTL 304

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKN--FMCVRRDYFGSDVCLE 353
             +F+   L D I+ Y+S  ++G     +   P     L++N  +        G+D+   
Sbjct: 305 NSAFLQQNLADEIVYYQSAKILGSNAQAAFSLPENPAVLQQNAEWQTADVQILGNDIKWT 364

Query: 354 YIG 356
              
Sbjct: 365 LRR 367


>gi|59800550|ref|YP_207262.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Neisseria gonorrhoeae FA 1090]
 gi|293397713|ref|ZP_06641919.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae F62]
 gi|59717445|gb|AAW88850.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Neisseria gonorrhoeae FA 1090]
 gi|291611659|gb|EFF40728.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae F62]
          Length = 369

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 125/365 (34%), Positives = 185/365 (50%), Gaps = 11/365 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  +   M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +
Sbjct: 2   FSDTNISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   
Sbjct: 62  AGEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  +  ++E++ +     +L+R   +R  + LK AVS D    ++   S  ITG  ++ 
Sbjct: 122 GIKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V +LRA+S A+L GIGTVLAD+P L  R        P RI+LD   +L  +S ++    
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPNSHLVTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGA 296
               I   E D+  L       +I I+          DL  L+ +L   G   ++VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +  +F+   L D I+LYRS  ++G G     +P           +  V  +  G D+  
Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGGGKDLFSLPENRAALSAPPLWTPVSSEILGHDIKT 360

Query: 353 EYIGK 357
            +   
Sbjct: 361 VFRKN 365


>gi|238911451|ref|ZP_04655288.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
          Length = 367

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 184/368 (50%), Gaps = 20/368 (5%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG 
Sbjct: 2   QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R   L               P+RI++D   +++  
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPT 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292
            +I++        I    +D   A     + I++   +   DL  L+  L  + + S+ V
Sbjct: 242 HRIVQQPGE--TWIARTQEDS-RAWPDSVRTISVPAHNGHLDLVVLMMQLGRQQINSIWV 298

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGS 348
           E G  +A + + + LVD +I+Y +  ++G           LE+      F      + G 
Sbjct: 299 EAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGP 358

Query: 349 DVCLEYIG 356
           DVCL  + 
Sbjct: 359 DVCLHMVS 366


>gi|302387516|ref|YP_003823338.1| riboflavin biosynthesis protein RibD [Clostridium saccharolyticum
           WM1]
 gi|302198144|gb|ADL05715.1| riboflavin biosynthesis protein RibD [Clostridium saccharolyticum
           WM1]
          Length = 368

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 112/357 (31%), Positives = 182/357 (50%), Gaps = 12/357 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+R ++   GL + NP V  ++VK+G +IG G     G  HAE  A+    E 
Sbjct: 3   DMEYMGMAVRLAQKGCGLVNPNPMVGAVLVKEGRIIGEGYYERYGALHAERNAILNCRES 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             G T YVTLEPC H+G++PPC + I++ GIRRVV+   DP+  V G+G++ L ++GI +
Sbjct: 63  PEGTTLYVTLEPCCHHGKTPPCTEAILQSGIRRVVIGSHDPNPLVKGKGIKQLREQGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V+ +++ E       +       + ++ +K A++ D         S  ITG  ++ +VH 
Sbjct: 123 VEDVLKEECDKLNEVFFHFIQTGKPYVVMKYAMTMDGKTAAYTGASKWITGEDARRRVHE 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R +  A++VGIGTVLADDP LTCRL      +P+RII D      LDS+I+ TA   P 
Sbjct: 183 DRRRYSAVMVGIGTVLADDPLLTCRLE--NGRNPLRIICDTQLHTPLDSRIVLTASKVPT 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           +I T + +      + K    I+    +    DL +L+  L    + S+L+EGG  +  S
Sbjct: 241 VIATSSMEREAHQPYIKAGCRILPVSQKDGHLDLARLMAKLGEEKIDSVLLEGGGILNWS 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
            + + +V+ +  Y +  ++G     +P+    +                 G D+ +E
Sbjct: 301 ALQAGIVNKVQAYLAPKLLGGAAGKTPVAGIGVPSPEAGYFLTNSTITCLGEDILIE 357


>gi|28897453|ref|NP_797058.1| riboflavin-specific deaminase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260366283|ref|ZP_05778739.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           K5030]
 gi|260876413|ref|ZP_05888768.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           AN-5034]
 gi|260898684|ref|ZP_05907180.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           Peru-466]
 gi|28805665|dbj|BAC58942.1| riboflavin-specific deaminase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308086936|gb|EFO36631.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           Peru-466]
 gi|308092982|gb|EFO42677.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           AN-5034]
 gi|308112701|gb|EFO50241.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           K5030]
          Length = 374

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 185/377 (49%), Gaps = 30/377 (7%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P S  D   MS AL+ +R  +  T+ NP+V C+IV+DG++IG G     G PHAEV A+ 
Sbjct: 9   PFSPQDFSMMSRALKLARRGIYTTAPNPNVGCVIVRDGVIIGEGYHHRAGEPHAEVYAMR 68

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG++A GATAYVTLEPCSHYGR+PPCA+ +I+  + RVV  ++DP+ +V+GRG+Q L +
Sbjct: 69  MAGDKAEGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMEDPNPKVAGRGIQMLRE 128

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            G+ +   ++E++       ++         I LK+A S D    ++   S  IT   ++
Sbjct: 129 AGVEVQVGLLENDAIELNRGFIKFMQTGMPFIQLKMAASLDGQSALSNGKSQWITSPQAR 188

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFK 229
             V   RAQS  IL    TVL D+  L  R + L +             P R+ILD   K
Sbjct: 189 QDVQRYRAQSGGILSTSKTVLDDNASLNVRWDDLPQSVQAHYELTEVRQPARVILDRQQK 248

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVT 288
           LS D K+  T     +I+ +E D              +      DL   L  +V    + 
Sbjct: 249 LSDDLKLFSTEGE-RIIVSSEGD----------VCPQLDQSGKIDLTATLKAVVTQHNIN 297

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRD 344
            L VE GA +A S I + LVD +I+Y +  ++G  G        L E     +       
Sbjct: 298 HLWVEAGATLASSLIKANLVDELIVYLAPKLMGSDGRGLIGALGLTEMAQVIDLNITDVR 357

Query: 345 YFGSDVCL--EYIGKNL 359
             G D+ +    + K +
Sbjct: 358 MVGRDIRITATLVRKEI 374


>gi|261417867|ref|YP_003251549.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y412MC61]
 gi|319767321|ref|YP_004132822.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y412MC52]
 gi|261374324|gb|ACX77067.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y412MC61]
 gi|317112187|gb|ADU94679.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y412MC52]
          Length = 380

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 139/370 (37%), Positives = 199/370 (53%), Gaps = 14/370 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  ++  VG TS NP+V  ++V  G V+G G     G PHAEV A+  AGE+
Sbjct: 4   DEHYMRLALDVAKAGVGQTSPNPAVGAVVVNGGTVVGLGAHLKAGEPHAEVYAIRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGAT YVTLEPCSHYG++PPCA  +I+ G+RRVVV   DP+  V+G+G+  L Q GI +
Sbjct: 64  ARGATVYVTLEPCSHYGKTPPCADLLIQAGVRRVVVATTDPNPLVAGKGIAKLRQAGIDV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +++ E       +      K   +TLK A S D  I  A   S  IT   ++  VH 
Sbjct: 124 DVGVLKDEADELNRMFFHYIAAKTPFVTLKFACSLDGKIATATGESKWITSSAAREDVHR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ DAILVG+ TVL D+P+LT R  G +  +P+RIILD   +  LD+ ++     A  
Sbjct: 184 LRAQHDAILVGVNTVLTDNPKLTVRF-GEKRKNPLRIILDTKLRTPLDAHVV-ADKEAET 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            I+T       A A+ +  + +        D++ +L +L  +GV SL VEGG+ V  SF+
Sbjct: 242 WIITGGVSREQAAAYERLGVRVFSMPTAQTDVRDVLRLLGEQGVMSLFVEGGSRVHDSFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVCLEYIGK- 357
            +  V+ +I Y +  +IG  G P+P+      +    V     R +  G D+ +    K 
Sbjct: 302 RAGAVNEVIAYIAPKLIGGRGAPTPVGGLGFARLAEAVELDIRRIETIGPDIKIVAAPKR 361

Query: 358 ---NLCLQEL 364
              +LC   L
Sbjct: 362 KEESLCSLAL 371


>gi|240015845|ref|ZP_04722385.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Neisseria gonorrhoeae FA6140]
 gi|240117225|ref|ZP_04731287.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Neisseria gonorrhoeae PID1]
 gi|240120474|ref|ZP_04733436.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Neisseria gonorrhoeae PID24-1]
 gi|240122774|ref|ZP_04735730.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Neisseria gonorrhoeae PID332]
 gi|254492997|ref|ZP_05106168.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae 1291]
 gi|268598251|ref|ZP_06132418.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae MS11]
 gi|268602915|ref|ZP_06137082.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID1]
 gi|268681384|ref|ZP_06148246.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID332]
 gi|226512037|gb|EEH61382.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae 1291]
 gi|268582382|gb|EEZ47058.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae MS11]
 gi|268587046|gb|EEZ51722.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID1]
 gi|268621668|gb|EEZ54068.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID332]
          Length = 369

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 125/365 (34%), Positives = 185/365 (50%), Gaps = 11/365 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  +   M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +
Sbjct: 2   FSDTNISMMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   
Sbjct: 62  AGEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  +  ++E++ +     +L+R   +R  + LK AVS D    ++   S  ITG  ++ 
Sbjct: 122 GIKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V +LRA+S A+L GIGTVLAD+P L  R        P RI+LD   +L  +S ++    
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPNSHLVTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGA 296
               I   E D+  L       +I I+          DL  L+ +L   G   ++VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +  +F+   L D I+LYRS  ++G G     +P           +  V  +  G D+  
Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGGGKDLFSLPENRAALSAPPLWTPVSSEILGHDIKT 360

Query: 353 EYIGK 357
            +   
Sbjct: 361 VFRKN 365


>gi|226951731|ref|ZP_03822195.1| riboflavin biosynthesis protein RibD [Acinetobacter sp. ATCC 27244]
 gi|226837521|gb|EEH69904.1| riboflavin biosynthesis protein RibD [Acinetobacter sp. ATCC 27244]
          Length = 366

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 123/366 (33%), Positives = 191/366 (52%), Gaps = 22/366 (6%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M  A+  +R     T  NP+V C+IVKDG ++G G     G PHAEV AL +AGE A
Sbjct: 13  KYWMQRAIDLARLGQYSTKPNPNVGCVIVKDGKILGEGFHPKAGQPHAEVFALRQAGENA 72

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           + ATAYVTLEPC+HYGR+PPCA+ +++  +++VV+   DP+  V+G+G++ L   GI V+
Sbjct: 73  KDATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVIACSDPNPLVAGKGVKILLDAGIEVE 132

Query: 128 RMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             + +E    L+  +L        ++ LK+A S D    MA   S  ITG I++  V   
Sbjct: 133 TGVCTEIAKGLNLGFLKAMSAGLPYVRLKVASSLDGRTAMASGESKWITGAIARQDVQHW 192

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGL----QEHSPMRIILDPHFKLSLDSKIIKTALL 242
           RA S A++ GI TVLADD EL  R            P RIILD   +L L +KI++    
Sbjct: 193 RAISGAVITGIQTVLADDCELNVRELEGVNLSTVVQPKRIILDRQGQLPLTAKILQNPE- 251

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHS 301
             V+++T              ++ +I    + L +LL  L  +  +  +LVE GA ++ +
Sbjct: 252 -TVMVMT-------PFRQELADLGVIQLSLQPLNQLLQTLSQQYQIYDVLVEAGATLSTA 303

Query: 302 FINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           F+   LVD +I Y +  ++G+       +   +   ++ F  V     G D+ L  +   
Sbjct: 304 FLQQGLVDEMISYVAPTLLGQSARAMFNAEFSKMAEQRRFELVDVTQLGQDIRLRLLP-- 361

Query: 359 LCLQEL 364
             +QE+
Sbjct: 362 --IQEM 365


>gi|254701540|ref|ZP_05163368.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 5 str. 513]
 gi|261752090|ref|ZP_05995799.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 5 str. 513]
 gi|261741843|gb|EEY29769.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 5 str. 513]
          Length = 373

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 168/358 (46%), Positives = 229/358 (63%), Gaps = 7/358 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM A +R++R H GLT TNPSV  +IVKDG+++GRGVTA GG PHAE QAL E GE 
Sbjct: 15  DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPC+H+GR+PPCA+ ++  G+ RVVV   DPD RVSG+G   L + GI +
Sbjct: 75  ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++  +    L  YL R   KR  + LK+A+S D MIG  G G V ITG +S+ Q H+
Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD   +L L S+++++A   P+
Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254

Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
            +    + P     A       I+  +  D    L +LL  L  +G+ S+LVEGGA VA 
Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314

Query: 301 SFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           SF++ +LVD +I++RS +VIG   G+     E ++   F  +RR  +  D C EY+  
Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYVRN 372


>gi|297529535|ref|YP_003670810.1| riboflavin biosynthesis protein RibD [Geobacillus sp. C56-T3]
 gi|297252787|gb|ADI26233.1| riboflavin biosynthesis protein RibD [Geobacillus sp. C56-T3]
          Length = 380

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 139/370 (37%), Positives = 199/370 (53%), Gaps = 14/370 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  ++  VG TS NP+V  ++V  G V+G G     G PHAEV A+  AGE+
Sbjct: 4   DEHYMRLALDVAKAGVGQTSPNPAVGAVVVNGGTVVGLGAHLKAGEPHAEVYAIRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGAT YVTLEPCSHYG++PPCA  +I+ G+RRVVV   DP+  V+G+G+  L Q GI +
Sbjct: 64  ARGATVYVTLEPCSHYGKTPPCADLLIQAGVRRVVVATTDPNPLVAGKGIAKLRQAGIDV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +++ E       +      K   +TLK A S D  I  A   S  IT   ++  VH 
Sbjct: 124 DVGVLKDEADELNRMFFHYIAAKTPFVTLKFACSLDGKIATATGESKWITSSAAREDVHR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ DAILVG+ TVL D+P+LT R  G +  +P+RIILD   +  LD+ ++     A  
Sbjct: 184 LRAQHDAILVGVNTVLTDNPKLTVRF-GEKRKNPLRIILDTKLRTPLDAHVV-ADKEAET 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            I+T       A A+ +  + +        D++ +L +L  +GV SL VEGG+ V  SF+
Sbjct: 242 WIITGGVSREQAAAYERLGVRVFSMPTAQIDVRDVLRLLGEQGVMSLFVEGGSRVHDSFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVCLEYIGK- 357
            +  V+ +I Y +  +IG  G P+P+      +    V     R +  G D+ +    K 
Sbjct: 302 RAGAVNEVIAYIAPKLIGGRGAPTPVGGLGFARLAEAVELDIRRIETIGPDIKIVAAPKR 361

Query: 358 ---NLCLQEL 364
              +LC   L
Sbjct: 362 KEESLCSLAL 371


>gi|198244553|ref|YP_002214370.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205351727|ref|YP_002225528.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207855897|ref|YP_002242548.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|197939069|gb|ACH76402.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205271508|emb|CAR36326.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|206707700|emb|CAR31984.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|326622118|gb|EGE28463.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326626762|gb|EGE33105.1| Riboflavin biosynthesis protein ribD [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 367

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 184/368 (50%), Gaps = 20/368 (5%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG 
Sbjct: 2   QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHQRAGEPHAEVHALRMAGA 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R   L               P+RI++D   +++  
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292
            +I++        I    +D   A     + I++   +   DL  L+  L  + + S+ V
Sbjct: 242 HRIVQQPGE--TWIARTQEDS-RAWPDSVRTISVPAHNGHLDLVVLMMQLGRQQINSIWV 298

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGS 348
           E G  +A + + + LVD +I+Y +  ++G           LE+      F      + G 
Sbjct: 299 EAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGP 358

Query: 349 DVCLEYIG 356
           DVCL  + 
Sbjct: 359 DVCLHMVS 366


>gi|17987472|ref|NP_540106.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Brucella melitensis bv. 1 str. 16M]
 gi|256044453|ref|ZP_05447357.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|260563804|ref|ZP_05834290.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 1
           str. 16M]
 gi|265990874|ref|ZP_06103431.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 1
           str. Rev.1]
 gi|17983168|gb|AAL52370.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Brucella melitensis bv. 1 str. 16M]
 gi|260153820|gb|EEW88912.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 1
           str. 16M]
 gi|263001658|gb|EEZ14233.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 1
           str. Rev.1]
          Length = 373

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 168/358 (46%), Positives = 229/358 (63%), Gaps = 7/358 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM A +R++R H GLT TNPSV  +IVKDG+++GRGVTA GG PHAE QAL E GE 
Sbjct: 15  DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPC+H+GR+PPCA+ ++  G+ RVVV   DPD RVSG+G   L + GI +
Sbjct: 75  ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++  +    L  YL R   KR  + LK+A+S D MIG  G G V ITG +S+ Q H+
Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD   +L L S+++++A   P+
Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254

Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
            +    + P     A       I+  +  D    L +LL  L  +G+ S+LVEGGA VA 
Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314

Query: 301 SFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           SF++ +LVD +I++RS +VIG   G+     E ++   F  +RR  +  D C EY+  
Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETHITSEFKILRRMRYADDACAEYVRN 372


>gi|256159495|ref|ZP_05457263.1| riboflavin biosynthesis protein RibD [Brucella ceti M490/95/1]
 gi|256254781|ref|ZP_05460317.1| riboflavin biosynthesis protein RibD [Brucella ceti B1/94]
 gi|261221961|ref|ZP_05936242.1| riboflavin biosynthesis protein RibD [Brucella ceti B1/94]
 gi|265997924|ref|ZP_06110481.1| riboflavin biosynthesis protein RibD [Brucella ceti M490/95/1]
 gi|260920545|gb|EEX87198.1| riboflavin biosynthesis protein RibD [Brucella ceti B1/94]
 gi|262552392|gb|EEZ08382.1| riboflavin biosynthesis protein RibD [Brucella ceti M490/95/1]
          Length = 373

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 167/358 (46%), Positives = 228/358 (63%), Gaps = 7/358 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM A +R++R H GLT TNPSV  +IVKDG+++GRGVTA GG PHAE QAL E GE 
Sbjct: 15  DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPC+H+GR+PPCA+ ++  G+ RVVV   DPD RVS +G   L + GI +
Sbjct: 75  ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSRKGFAILREAGIEV 134

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++  +    L  YL R   KR  + LK+A+S D MIG  G G V ITG +S+ Q H+
Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD   +L L S+++++A   P+
Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254

Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
            +    + P     A       I+  +  D    L +LL  L  +G+ S+LVEGGA VA 
Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314

Query: 301 SFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           SF++ +LVD +I++RS +VIG   G+     E ++   F  +RR  +  D C EY+  
Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYVRN 372


>gi|229592849|ref|YP_002874968.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens
           SBW25]
 gi|229364715|emb|CAY52681.1| riboflavin biosynthesis protein RibD [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase]
           [Pseudomonas fluorescens SBW25]
          Length = 369

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 123/358 (34%), Positives = 181/358 (50%), Gaps = 17/358 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            DA +M+ AL  +R  +  T  NP V C+IV+DG V+G G     G PHAEV AL  AG+
Sbjct: 2   LDAHYMARALELARKGLYTTHPNPRVGCVIVRDGQVVGEGWHVRTGEPHAEVHALRAAGD 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +ARGATAYVTLEPCSHYG +PPCA  ++  G+ RVV  + DP+  V+GRG+Q L+Q GI 
Sbjct: 62  KARGATAYVTLEPCSHYGHTPPCADALVSAGLARVVAAMQDPNPEVAGRGMQRLAQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   ++ESE +     +L R  +    + +K+A+S D    MA   S  ITG  ++  V 
Sbjct: 122 VRSGVLESEARALNRGFLKRMEQGLPFVRVKLAMSLDGRTAMASGESQWITGPAARAAVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDS 234
            LRA++  +L G  TVLAD   LT R   L              P+R+++D   ++ L++
Sbjct: 182 RLRAEASVVLTGADTVLADGARLTVRAAELGLDDATTALAMSRPPLRVLIDGRLRVPLNA 241

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
              K     P +++T            +  +        DL+  L  L  RGV  +LVE 
Sbjct: 242 PFFK---AGPALVITCVTAENQFPRGPECLVVPGVEGQVDLRSALVALAARGVNDVLVEA 298

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSD 349
           G ++A +F    LVD  +++ +   +G    P    PL++               G D
Sbjct: 299 GPSLAGAFAQQGLVDEYVIFVAGKFLGSAARPLLDWPLDKLADAPQLKITEMRAVGDD 356


>gi|325197682|gb|ADY93138.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis G2136]
          Length = 369

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 188/367 (51%), Gaps = 13/367 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +
Sbjct: 2   FSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALHQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   
Sbjct: 62  AGEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLESA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  +  ++E++ +     +L+    +R  + LK AVS D    ++   S  ITG  ++ 
Sbjct: 122 GIKTECGLLENKARELNRGFLSSIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V +LRA+S A+L GIGTVLAD+P+L  R        P RI+LD   +L LDS ++ T  
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPQLNVR-AFPTLRQPARIVLDSRLRLPLDSHLL-TDG 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGG 295
            +P  I T   +      +R+     I           DL  L+ +L   G   ++VE G
Sbjct: 240 QSPTYIATLERNEDRLHPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAG 299

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           + +  +F+   L D I+LYRS  ++G G     +P           +  V  +  G D+ 
Sbjct: 300 SELTSAFLAEDLADEIVLYRSPKILGSGKDLLSLPENRAALSAPPLWTPVSSEILGHDIK 359

Query: 352 LEYIGKN 358
             +   +
Sbjct: 360 TVFRKND 366


>gi|313904567|ref|ZP_07837942.1| riboflavin biosynthesis protein RibD [Eubacterium cellulosolvens 6]
 gi|313470537|gb|EFR65864.1| riboflavin biosynthesis protein RibD [Eubacterium cellulosolvens 6]
          Length = 367

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 113/360 (31%), Positives = 169/360 (46%), Gaps = 19/360 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A+  +R   G    NP V  +IV+DG +IG G     G  HAE  A +   E A GA
Sbjct: 1   MRRAIELARQGEGWCHPNPMVGAVIVRDGKIIGEGYHRKCGELHAERNAFQSLRESAEGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
             YVTLEPC H GR+PPC + II   IR+VV+   DP+ +V G+G + L + GI +V+  
Sbjct: 61  VLYVTLEPCCHVGRTPPCTEAIIGHKIRKVVIGSRDPNPKVHGKGAELLRRAGIEVVEDF 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +  E       +     ++R ++ LK A++ D  I      S  ITG  ++ +V  +R  
Sbjct: 121 LREECDALNDVFFHYITKRRPYVKLKYAMTADGKIATRTGASKWITGEEAREEVQRMRHA 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
              I+VG GTV  DDP L CRL G     P+RII D    +  +S+I+++A     IIV 
Sbjct: 181 CMGIMVGSGTVRKDDPMLNCRLPG--GRDPVRIICDSKLSIGENSQIMRSAEQQRTIIVA 238

Query: 250 ENDD-----PVLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAVA 299
              D             K    +           DL  L+  L    + S+L+EGG  +A
Sbjct: 239 ACRDVDAGFESRREILEKAGAEVWNLPKQAGEGVDLNLLMEKLGEIEIDSVLLEGGGILA 298

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVCLEY 354
            S + + +V  + ++ +  + G  G  SP+E   ++     V         FG D+ + Y
Sbjct: 299 DSALRAGIVSEVDVFTAPKIFGGRG-KSPVEGEGVDLPSEAVMLTPKEVKMFGPDLFVRY 357


>gi|197248845|ref|YP_002145398.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197212548|gb|ACH49945.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 367

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG 
Sbjct: 2   QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHQRAGDPHAEVHALRMAGA 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGTSVDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R   L               P+RI++D   +++  
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++       I  T+ D      A R  ++   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE-TWIARTQEDSRAWPDAVRTISV-PAHNGHLDLVVLMMQLGRQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  + 
Sbjct: 360 VCLHMVS 366


>gi|168232389|ref|ZP_02657447.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194470692|ref|ZP_03076676.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194457056|gb|EDX45895.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205333401|gb|EDZ20165.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 367

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 184/368 (50%), Gaps = 20/368 (5%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG 
Sbjct: 2   QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R   L               P+RI++D   +++  
Sbjct: 182 RLRAQSHAILTSGATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPT 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292
            +I++        I    +D   A     + I++   +   DL  L+  L  + + S+ V
Sbjct: 242 HRIVQQPGE--TWIARTQEDS-RAWPDSVRTISVPAHNGHLDLVVLMMQLGRQQINSIWV 298

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGS 348
           E G  +A + + + LVD +I+Y +  ++G           LE+      F      + G 
Sbjct: 299 EAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGP 358

Query: 349 DVCLEYIG 356
           DVCL  + 
Sbjct: 359 DVCLHMVS 366


>gi|23501654|ref|NP_697781.1| riboflavin biosynthesis protein RibD [Brucella suis 1330]
 gi|62289719|ref|YP_221512.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 1 str.
           9-941]
 gi|82699648|ref|YP_414222.1| cytidine/deoxycytidylate deaminase zinc-binding subunit [Brucella
           melitensis biovar Abortus 2308]
 gi|148559719|ref|YP_001258746.1| riboflavin biosynthesis protein RibD [Brucella ovis ATCC 25840]
 gi|161618734|ref|YP_001592621.1| riboflavin biosynthesis protein RibD [Brucella canis ATCC 23365]
 gi|163843038|ref|YP_001627442.1| riboflavin biosynthesis protein RibD [Brucella suis ATCC 23445]
 gi|189023968|ref|YP_001934736.1| riboflavin biosynthesis protein RibD [Brucella abortus S19]
 gi|225627265|ref|ZP_03785302.1| riboflavin biosynthesis protein RibD [Brucella ceti str. Cudo]
 gi|225852283|ref|YP_002732516.1| riboflavin biosynthesis protein RibD [Brucella melitensis ATCC
           23457]
 gi|237815207|ref|ZP_04594205.1| riboflavin biosynthesis protein RibD [Brucella abortus str. 2308 A]
 gi|254689028|ref|ZP_05152282.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 6 str.
           870]
 gi|254693511|ref|ZP_05155339.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697163|ref|ZP_05158991.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254704089|ref|ZP_05165917.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 3 str. 686]
 gi|254707010|ref|ZP_05168838.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis
           M163/99/10]
 gi|254709881|ref|ZP_05171692.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis B2/94]
 gi|254713882|ref|ZP_05175693.1| riboflavin biosynthesis protein RibD [Brucella ceti M644/93/1]
 gi|254717061|ref|ZP_05178872.1| riboflavin biosynthesis protein RibD [Brucella ceti M13/05/1]
 gi|254730059|ref|ZP_05188637.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 4 str.
           292]
 gi|256031374|ref|ZP_05444988.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis
           M292/94/1]
 gi|256257278|ref|ZP_05462814.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 9 str.
           C68]
 gi|256264212|ref|ZP_05466744.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 2
           str. 63/9]
 gi|260168507|ref|ZP_05755318.1| riboflavin biosynthesis protein RibD [Brucella sp. F5/99]
 gi|260545528|ref|ZP_05821269.1| riboflavin biosynthesis protein RibD [Brucella abortus NCTC 8038]
 gi|260566663|ref|ZP_05837133.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 4 str. 40]
 gi|260754523|ref|ZP_05866871.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 6 str.
           870]
 gi|260757744|ref|ZP_05870092.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 4 str.
           292]
 gi|260761569|ref|ZP_05873912.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260883551|ref|ZP_05895165.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 9 str.
           C68]
 gi|261213771|ref|ZP_05928052.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 3 str.
           Tulya]
 gi|261218871|ref|ZP_05933152.1| riboflavin biosynthesis protein RibD [Brucella ceti M13/05/1]
 gi|261314477|ref|ZP_05953674.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis
           M163/99/10]
 gi|261317423|ref|ZP_05956620.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis B2/94]
 gi|261321630|ref|ZP_05960827.1| riboflavin biosynthesis protein RibD [Brucella ceti M644/93/1]
 gi|261754749|ref|ZP_05998458.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 3 str. 686]
 gi|261757977|ref|ZP_06001686.1| riboflavin biosynthesis protein RibD [Brucella sp. F5/99]
 gi|265988460|ref|ZP_06101017.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis
           M292/94/1]
 gi|297248124|ref|ZP_06931842.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 5 str.
           B3196]
 gi|23347574|gb|AAN29696.1| riboflavin biosynthesis protein RibD [Brucella suis 1330]
 gi|62195851|gb|AAX74151.1| RibD, riboflavin biosynthesis protein RibD [Brucella abortus bv. 1
           str. 9-941]
 gi|82615749|emb|CAJ10745.1| Cytidine/deoxycytidylate deaminase, zinc-binding region:Bacterial
           bifunctional deaminase-reductase, C-terminal:Riboflavin
           bio [Brucella melitensis biovar Abortus 2308]
 gi|148370976|gb|ABQ60955.1| riboflavin biosynthesis protein RibD [Brucella ovis ATCC 25840]
 gi|161335545|gb|ABX61850.1| riboflavin biosynthesis protein RibD [Brucella canis ATCC 23365]
 gi|163673761|gb|ABY37872.1| riboflavin biosynthesis protein RibD [Brucella suis ATCC 23445]
 gi|189019540|gb|ACD72262.1| riboflavin biosynthesis protein RibD [Brucella abortus S19]
 gi|225617270|gb|EEH14315.1| riboflavin biosynthesis protein RibD [Brucella ceti str. Cudo]
 gi|225640648|gb|ACO00562.1| riboflavin biosynthesis protein RibD [Brucella melitensis ATCC
           23457]
 gi|237790044|gb|EEP64254.1| riboflavin biosynthesis protein RibD [Brucella abortus str. 2308 A]
 gi|260096935|gb|EEW80810.1| riboflavin biosynthesis protein RibD [Brucella abortus NCTC 8038]
 gi|260156181|gb|EEW91261.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 4 str. 40]
 gi|260668062|gb|EEX55002.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 4 str.
           292]
 gi|260672001|gb|EEX58822.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260674631|gb|EEX61452.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 6 str.
           870]
 gi|260873079|gb|EEX80148.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 9 str.
           C68]
 gi|260915378|gb|EEX82239.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 3 str.
           Tulya]
 gi|260923960|gb|EEX90528.1| riboflavin biosynthesis protein RibD [Brucella ceti M13/05/1]
 gi|261294320|gb|EEX97816.1| riboflavin biosynthesis protein RibD [Brucella ceti M644/93/1]
 gi|261296646|gb|EEY00143.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis B2/94]
 gi|261303503|gb|EEY07000.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis
           M163/99/10]
 gi|261737961|gb|EEY25957.1| riboflavin biosynthesis protein RibD [Brucella sp. F5/99]
 gi|261744502|gb|EEY32428.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 3 str. 686]
 gi|263094456|gb|EEZ18278.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 2
           str. 63/9]
 gi|264660657|gb|EEZ30918.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis
           M292/94/1]
 gi|297175293|gb|EFH34640.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 5 str.
           B3196]
 gi|326408787|gb|ADZ65852.1| riboflavin biosynthesis protein RibD [Brucella melitensis M28]
          Length = 373

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 168/358 (46%), Positives = 229/358 (63%), Gaps = 7/358 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM A +R++R H GLT TNPSV  +IVKDG+++GRGVTA GG PHAE QAL E GE 
Sbjct: 15  DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPC+H+GR+PPCA+ ++  G+ RVVV   DPD RVSG+G   L + GI +
Sbjct: 75  ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++  +    L  YL R   KR  + LK+A+S D MIG  G G V ITG +S+ Q H+
Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD   +L L S+++++A   P+
Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254

Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
            +    + P     A       I+  +  D    L +LL  L  +G+ S+LVEGGA VA 
Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314

Query: 301 SFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           SF++ +LVD +I++RS +VIG   G+     E ++   F  +RR  +  D C EY+  
Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYVRN 372


>gi|71898908|ref|ZP_00681075.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|71731320|gb|EAO33384.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
           C-terminal [Xylella fastidiosa Ann-1]
          Length = 364

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 123/357 (34%), Positives = 188/357 (52%), Gaps = 9/357 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S+ D R M  AL  +      T  NP V C+IV+DG V+G G     G PHAEV AL  
Sbjct: 4   FSADDHRHMERALCLAERGAYTTRPNPMVGCVIVRDGEVVGEGWHQRAGDPHAEVFALCA 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ ARGATAYVTLEPC+H GR+PPCA  +I+ G+RRVV  + DP   V+G G+  L   
Sbjct: 64  AGDLARGATAYVTLEPCAHSGRTPPCAMALIDAGVRRVVAAMVDPFPLVNGGGVTLLRAA 123

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +   +ME++ +     +L+R    R  + +K+  S D    +A   S  ITG  ++ 
Sbjct: 124 GVTVEHGLMEAQARALNRGFLSRVERGRPWVRIKLGSSLDGRTALASGESKWITGEAARV 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKT 239
            V   RA++ AIL G GTVLADDP LT RL G +     P+R++LD   +     K+   
Sbjct: 184 DVQRWRARASAILTGAGTVLADDPALTVRLGGEEGAFLPPLRVVLDSSLRSLSCVKVRD- 242

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
              AP + +         L     +         DL+ +L +L  RG+  + VE GA + 
Sbjct: 243 -GTAPTLYLHGFGVTSPVLQHVDFSEVQQRDAGLDLEAVLRLLGERGINEVQVEAGATLC 301

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCVRRDYFGSDVCL 352
            + +++ LVD +++Y + +++G+   P  + L+ G +++      +     G+D+ L
Sbjct: 302 GALLHAGLVDELLIYIAPLLLGDTARPLLAGLDIGRMDQCIGLKVLEVAQVGNDLRL 358


>gi|77461240|ref|YP_350747.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Pseudomonas fluorescens Pf0-1]
 gi|77385243|gb|ABA76756.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas
           fluorescens Pf0-1]
          Length = 376

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 127/358 (35%), Positives = 176/358 (49%), Gaps = 17/358 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            DA FM+ AL  +R     T  NP V C+IV+DG ++G G     G PHAEV AL  AGE
Sbjct: 9   LDAHFMARALELARKGHYTTHPNPRVGCVIVRDGQIVGEGWHERAGEPHAEVHALRAAGE 68

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            ARGATAYVTLEPCSH+GR+PPCA  ++  GI RVV  + DP+ +V+GRGLQ L+  GI 
Sbjct: 69  RARGATAYVTLEPCSHHGRTPPCADALVNAGIGRVVAAMRDPNPQVAGRGLQRLTDAGIA 128

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
            +  ++E+E +     +L R       + +K+A+S D    M    S  ITG  +++ V 
Sbjct: 129 TESGVLEAEARKLNQGFLKRMEHGLPFVRVKLAMSLDGRTAMESGESQWITGPAARSAVQ 188

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDS 234
            LRAQ+  +L G  TVLAD   LT R   L              P+R+++D   ++ LD+
Sbjct: 189 RLRAQASVVLTGADTVLADGARLTVRGEELGLDAAQTALALSRPPLRVLIDGRLRVPLDA 248

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
              K     P ++ T            +  I        DL +LL  L  RGV  +LVE 
Sbjct: 249 PFFK---AGPALVATCVAIEEQYAHGPECLIVPGDDGQVDLHQLLIELANRGVNEVLVEA 305

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSD 349
           G  +A +F    LVD  +++ +   +G    P    PL                 G D
Sbjct: 306 GPRLAGAFAQFGLVDEFVIFIAGKFLGSTARPLLDWPLACMKDAPELKITEIRAVGDD 363


>gi|167464708|ref|ZP_02329797.1| riboflavin specific deaminase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 341

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 117/326 (35%), Positives = 182/326 (55%), Gaps = 6/326 (1%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M  AL  ++   G T  NP V C++VKDG +IG G   + G  HAEV AL+ AG 
Sbjct: 5   QDEMYMRLALDMAKGAKGQTGVNPVVGCVLVKDGRIIGMGAHLHRGQGHAEVHALQMAGA 64

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           EA G+TAYVTLEPCSH+G++PPC+  +I+ G++RVV+   DP+ +V+G G++ L   GI 
Sbjct: 65  EAEGSTAYVTLEPCSHFGKTPPCSGRLIDHGVKRVVIAAVDPNPQVAGAGIERLRSAGIE 124

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           VD  ++  E      A+    V     +T+K A + D  I      S  ITG +S+  VH
Sbjct: 125 VDVGLLAEEASAMNEAFNKYIVTGMPFVTMKTASTLDGKIAAKTGDSKWITGDLSRAYVH 184

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            +R Q   ILV + TV+ADDP+L+ RL  +    P+RI+ D   +L L++++++     P
Sbjct: 185 TMRHQHQGILVSVDTVIADDPQLSTRLT-VPALQPVRIVADSRLRLPLEAQVLQDLDRQP 243

Query: 245 VIIVTEN-DDPVLALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
            I++T     P    A  + + +++ C      DL+  +  L  R + S+L+EGG  +  
Sbjct: 244 TIVLTTELSSPERRRALEELSASVLTCGSGPQVDLRLAMKQLGEREIGSILLEGGGRLNG 303

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIP 326
           + +   LVD I+L+ +  +IG    P
Sbjct: 304 AMLEQGLVDKIMLFVAPKIIGGKLSP 329


>gi|56420832|ref|YP_148150.1| riboflavin-specific deaminase [Geobacillus kaustophilus HTA426]
 gi|56380674|dbj|BAD76582.1| riboflavin-specific deaminase
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
           5-amino-6-(5-phosphoribosylamino)uracil reductase )
           [Geobacillus kaustophilus HTA426]
          Length = 380

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 139/370 (37%), Positives = 199/370 (53%), Gaps = 14/370 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  ++  VG TS NP+V  ++V  G V+G G     G PHAEV A+  AGE+
Sbjct: 4   DEHYMRLALDVAKAGVGQTSPNPAVGAVVVNGGTVVGLGGHLKAGEPHAEVYAIRMAGEK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGAT YVTLEPCSHYG++PPCA  +I+ G+RRVVV   DP+  V+G+G+  L Q GI +
Sbjct: 64  ARGATVYVTLEPCSHYGKTPPCADLLIQAGVRRVVVATTDPNPLVAGKGIAKLRQAGIDV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +++ E       +      K   +TLK A S D  I  A   S  IT   ++  VH 
Sbjct: 124 DVGVLKDEADELNRMFFHYIAAKTPFVTLKFACSLDGKIATATGESKWITSSAAREDVHR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ DAILVG+ TVL D+P+LT R  G +  +P+RIILD   +  LD+ ++     A  
Sbjct: 184 LRAQHDAILVGVNTVLTDNPKLTVRF-GEKRKNPLRIILDTKLRTPLDAHVV-ADKEAET 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            I+T       A A+ +  + +        D++ +L +L  +GV SL VEGG+ V  SF+
Sbjct: 242 WIITGGVSREQAAAYERLGVRVFSMPTAQIDVRDVLRLLGEQGVMSLFVEGGSRVHDSFL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVCLEYIGK- 357
            +  V+ +I Y +  +IG  G P+P+      +    V     R +  G D+ +    K 
Sbjct: 302 RAGAVNEVIAYIAPKLIGGRGAPTPVGGLGFARLAEAVELDIRRIETIGPDIKIVAAPKR 361

Query: 358 ---NLCLQEL 364
              +LC   L
Sbjct: 362 KEESLCSLAL 371


>gi|290968502|ref|ZP_06560041.1| riboflavin biosynthesis protein RibD [Megasphaera genomosp. type_1
           str. 28L]
 gi|290781498|gb|EFD94087.1| riboflavin biosynthesis protein RibD [Megasphaera genomosp. type_1
           str. 28L]
          Length = 378

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 126/365 (34%), Positives = 190/365 (52%), Gaps = 13/365 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           A +M  AL  ++  +G TS NP V C+IVKDG ++G G     G PHAEV AL+EAG+ A
Sbjct: 4   AEYMKKALALAKIALGYTSPNPVVGCVIVKDGEIVGTGYHHQAGAPHAEVLALQEAGDRA 63

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            GAT YVTLEPC+HYGR+PPCA+ +++  I++VV+ + DP+  V+G+G   L Q GI+V+
Sbjct: 64  TGATVYVTLEPCAHYGRTPPCARTLVQHKIKKVVIAMLDPNPLVAGKGAAILRQAGIVVE 123

Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++ +E       ++   +     I +K+A S D  I      S  IT   S+     L
Sbjct: 124 VGLLSAEAVKLNEVFIKNMLSNIPFIAIKLAQSLDGCIATRTGHSQWITNAWSRQYGQYL 183

Query: 187 RAQSDAILVGIGTVLADDPELTC---RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           R+  D ILVGI T+L D+P LTC   R      H P+RI+LD + +  L S+++      
Sbjct: 184 RSIYDGILVGINTILEDNPLLTCRVRREGQAVPHQPIRIVLDTYGRTPLSSQVVNDKTAR 243

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAV 298
            +I+ T         A     + ++        C DL   L +L   G+ S+LVEGG+ +
Sbjct: 244 TIIMTTAQCPQEKKEALLAAGVTVLTAPTANTGCVDLHAALQLLRQEGIGSILVEGGSTI 303

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
             SF +++LVD I  +    +IG       +    ++    CV   Y   D  +E    N
Sbjct: 304 HGSFFDAKLVDKIYAFLGNSIIGGTCALCSVAGEGVDGLEECVPLHY---D-SIEIHDDN 359

Query: 359 LCLQE 363
           + +Q 
Sbjct: 360 ILIQA 364


>gi|15837552|ref|NP_298240.1| riboflavin-specific deaminase [Xylella fastidiosa 9a5c]
 gi|9105878|gb|AAF83760.1|AE003934_2 riboflavin-specific deaminase [Xylella fastidiosa 9a5c]
          Length = 364

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 123/357 (34%), Positives = 187/357 (52%), Gaps = 9/357 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D R M  AL  +      T  NP V C+IV+DG V+G G     G PHAEV AL  
Sbjct: 4   FSVDDYRHMERALCLAERGAYTTRPNPMVGCVIVRDGEVVGEGWHQRAGDPHAEVFALCA 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ ARGATAYVTLEPC+H GR+PPCA  +I+ G+RRVV  + DP   V+G G+  L   
Sbjct: 64  AGDRARGATAYVTLEPCAHLGRTPPCAMALIDAGVRRVVAAMVDPFPLVNGGGVTLLRAA 123

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +   +ME++ +     +L+R    R  + +K+  S D    +A   S  ITG  ++ 
Sbjct: 124 GVTVEHGLMEAQARALNRGFLSRVERGRPWVRIKLGSSLDGRTALASGESKWITGEAARA 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKT 239
            V   RA++ AIL G GTVLADDP LT RL G +     P+R++LD   +     K+   
Sbjct: 184 DVQRWRARASAILTGAGTVLADDPALTVRLGGEEGAFLPPLRVVLDSRLRSLSCVKVRD- 242

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
              AP + +         L     +         DL+ +L +L  RG+  + VE GA + 
Sbjct: 243 -GTAPTLYLHGFGVTSPVLQHVDFSEVQQRDAGLDLEAVLRLLGERGINEVQVEAGATLC 301

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCVRRDYFGSDVCL 352
            + +++ LVD +++Y + +++G+   P  + L+ G +++      +     G+D+ L
Sbjct: 302 GALLHAGLVDELLIYIAPLLLGDTARPLLAGLDIGRMDQCIGLKVLEVVQVGNDLRL 358


>gi|239993720|ref|ZP_04714244.1| Riboflavin biosynthesis protein RibD [Alteromonas macleodii ATCC
           27126]
          Length = 379

 Score =  343 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 111/370 (30%), Positives = 177/370 (47%), Gaps = 24/370 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D  +M+ A++ ++     TS NP V C+IV  +  ++G+G     G PHAEV AL  A  
Sbjct: 9   DYFWMAKAIQLAQQGRFTTSPNPRVGCVIVDENNQLLGQGYHIQAGTPHAEVHALRHASN 68

Query: 66  E----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                A+GATAYVTLEPCSH+GR+PPCA  ++E  + RVV+ + DP+  V G G+  L +
Sbjct: 69  ARPQGAKGATAYVTLEPCSHFGRTPPCAVALVEAKVARVVIAMTDPNPNVCGNGISILQE 128

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +V  +M +E       ++ R +     + +K+ +S D  I +    S  ITG  ++
Sbjct: 129 AGIEVVSEVMAAEAAALNPGFIKRMLTGEPFVRVKLGISLDGKIALQNGVSQWITGAEAR 188

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--------EHSPMRIILDPHFKLSL 232
             V   RAQS  +L G GTV AD+P L  R    Q           P R+++D   KL+ 
Sbjct: 189 RDVQQYRAQSCVVLTGSGTVKADNPSLLVREQEAQFTNYPLEHIRQPARVVVDSKSKLTR 248

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLL 291
           D  +     +      T    P  A    +  + +   D + DL  L++ L  +    + 
Sbjct: 249 DYTLFNDGNI--TFTATSQAHPDTAT---QHYLQLDEKDGKLDLHALMSALGDKQYNEVW 303

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFG 347
           VE G  +A + +   LVD +I Y++  ++G+ G+       +   N       +     G
Sbjct: 304 VEAGPGLAGALLQEGLVDELICYQAPKLLGDKGVSMVNLPAFTSLNECISLSLIENRQVG 363

Query: 348 SDVCLEYIGK 357
           +D+ L +   
Sbjct: 364 NDIKLIFRPD 373


>gi|161504399|ref|YP_001571511.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160865746|gb|ABX22369.1| hypothetical protein SARI_02510 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 367

 Score =  343 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 182/368 (49%), Gaps = 20/368 (5%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP V C+IV +G ++G G     G PHAEV AL  AG 
Sbjct: 2   QDEFYMARALKLAQRGRFTTHPNPDVGCVIVNNGEIVGEGYHQRAGEPHAEVHALRMAGA 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+G GL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGCGLYRLQQAGIA 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R   L               P+RI++D   +++  
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292
            +I++        I    +D   A     + I++   +   DL  L+  L  + + S+ V
Sbjct: 242 HRIVQQPGE--TWIARTQEDS-RAWPDSVRTISVPAHNGHLDLVVLMMQLGRQQINSIWV 298

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGS 348
           E G  +A + + + LVD +I+Y +  ++G           LE+      F      + G 
Sbjct: 299 EAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGP 358

Query: 349 DVCLEYIG 356
           DVCL  + 
Sbjct: 359 DVCLHMVS 366


>gi|284047735|ref|YP_003398074.1| riboflavin biosynthesis protein RibD [Acidaminococcus fermentans
           DSM 20731]
 gi|283951956|gb|ADB46759.1| riboflavin biosynthesis protein RibD [Acidaminococcus fermentans
           DSM 20731]
          Length = 371

 Score =  343 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 120/361 (33%), Positives = 186/361 (51%), Gaps = 14/361 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62
           +  D  +M  AL  +    G TS NP V C+IV  +G ++G+G     G PHAE+ A+ +
Sbjct: 6   TVTDEEYMQMALDLAEKARGCTSPNPLVGCVIVNPEGQIVGKGYHHKAGQPHAEIMAMAD 65

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG +  G TAYVTLEPCSHYGR+ PC + +I  GI++VV   DDP+ +V+GRG   L + 
Sbjct: 66  AGNQVEGCTAYVTLEPCSHYGRTGPCCEALIRAGIKKVVAAADDPNPKVAGRGFARLQEA 125

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +V  ++  +       ++      R  + LK A++ D  I  A   S  I+   S+ 
Sbjct: 126 GVEVVRGVLADKANRQNEVFMHWMKTGRPFVALKYAMTLDGKIATASGDSKWISNEQSRT 185

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
             H LR+  D ILVG  TVL DDP LTCRL  ++  +P+RI+LD H +L +D K+     
Sbjct: 186 YAHKLRSIYDCILVGKNTVLNDDPSLTCRL--VEGKNPLRIVLDSHCQLPMDRKVFTDGE 243

Query: 242 LAPVIIVTENDDPVLALAFRKKN-INIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
              +++ +   D   A AF+  + + +     +    DL  LL  L  +  TS+LVEGG+
Sbjct: 244 ARTLLVTSLKADRDKAAAFQALDQVTVWQIPEKNGALDLGILLDRLGQQEKTSVLVEGGS 303

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-----LEKNFMCVRRDYFGSDVC 351
            V  +F + RL   +  + +  +IG       +         L       + + FG+D+ 
Sbjct: 304 QVHGAFFDGRLAQRVYAFIAPCLIGGKRNLGAIGGRGARNMDLRVTLQEPQYEAFGTDLM 363

Query: 352 L 352
           +
Sbjct: 364 V 364


>gi|204927242|ref|ZP_03218444.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204323907|gb|EDZ09102.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 367

 Score =  343 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 126/367 (34%), Positives = 183/367 (49%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG 
Sbjct: 2   QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHQRAGEPHAEVHALRMAGA 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R   L               P+RI++D   +++  
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWTELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++       I  T+ D      A R  ++   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE-TWIARTQEDSRAWPDAVRTISV-PAHNGHLDLVVLMMQLGRQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE       F      + G D
Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLERLADAPQFTFSEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  + 
Sbjct: 360 VCLHMVS 366


>gi|227824644|ref|ZP_03989476.1| riboflavin biosynthesis protein ribD [Acidaminococcus sp. D21]
 gi|226905143|gb|EEH91061.1| riboflavin biosynthesis protein ribD [Acidaminococcus sp. D21]
          Length = 366

 Score =  343 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 125/358 (34%), Positives = 186/358 (51%), Gaps = 14/358 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D  +M  AL  +    G TS NP V C+IV  DG V+G+G     G PHAE+ A+++AGE
Sbjct: 3   DEEYMQMALDLAEKARGATSPNPLVGCVIVSPDGHVVGKGYHHKAGEPHAEINAMDDAGE 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +  GATAYVTLEPCSHYGR+ PC + +I+ GI++VV    DP+ RVSGRG + L + G+ 
Sbjct: 63  KTAGATAYVTLEPCSHYGRTGPCCEALIKAGIKKVVAAATDPNPRVSGRGFRRLEEAGVE 122

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V  ++  +       ++      R  + LK A++ D  I      S  ITG  ++   H
Sbjct: 123 VVSGVLADKAYRQNEIFMHYMKTGRPFVALKYAMTLDGKIATVSGDSKWITGVKARTYAH 182

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR+  DAILVG  TV  DDP LT RL  ++  +P+RIILD    L L+ K+        
Sbjct: 183 RLRSWYDAILVGRETVAQDDPSLTVRL--VEGKNPLRIILDSKASLPLERKVFTDGAADT 240

Query: 245 VIIVTENDDPVLALAFRK-KNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299
           +++VT         AF     ++++    R    DL  LL  L  + VTS+LVEGG+ + 
Sbjct: 241 LLVVTPQALQEKVRAFADLPGVSVLTAAERDGHVDLSDLLQQLAKKDVTSVLVEGGSDIH 300

Query: 300 HSFINSRLVDSIILYRSQIVIGE-GGIPSPLEEGYLEKN----FMCVRRDYFGSDVCL 352
            +F ++ LV+ +  + +  +IG     P+   +G            V       D+ +
Sbjct: 301 GAFFDAGLVERVYAFIAPSLIGGNKSRPAIGGQGASTMEQKVTLQEVTTLPLEPDLLV 358


>gi|256060883|ref|ZP_05451043.1| riboflavin biosynthesis protein RibD [Brucella neotomae 5K33]
 gi|261324881|ref|ZP_05964078.1| riboflavin biosynthesis protein RibD [Brucella neotomae 5K33]
 gi|261300861|gb|EEY04358.1| riboflavin biosynthesis protein RibD [Brucella neotomae 5K33]
          Length = 373

 Score =  343 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 168/358 (46%), Positives = 229/358 (63%), Gaps = 7/358 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM A +R++R H GLT TNPSV  +IVKDG+++GRGVTA GG PHAE QAL E GE 
Sbjct: 15  DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPC+H+GR+PPCA+ ++  G+ RVVV   DPD RVSG+G   L + GI +
Sbjct: 75  ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++  +    L  YL R   KR  + LK+A+S D MIG  G G V ITG +S+ Q H+
Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD   +L L S+++++A   P+
Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254

Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
            +    + P     A       I+  +  D    L +LL  L  +G+ S+LVEGGA VA 
Sbjct: 255 WVACGEEAPDERRAAMGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314

Query: 301 SFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           SF++ +LVD +I++RS +VIG   G+     E ++   F  +RR  +  D C EY+  
Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYVRN 372


>gi|209517119|ref|ZP_03265966.1| riboflavin biosynthesis protein RibD [Burkholderia sp. H160]
 gi|209502512|gb|EEA02521.1| riboflavin biosynthesis protein RibD [Burkholderia sp. H160]
          Length = 383

 Score =  343 bits (879), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 126/367 (34%), Positives = 195/367 (53%), Gaps = 23/367 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  ++  +  T  NP V C++V++G VIG G T   G  HAE++AL++
Sbjct: 2   FSQTDFVHMERALALAKRGMYTTDPNPRVGCVLVRNGEVIGEGYTQPAGQDHAEIRALKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + RGATAYVTLEPCSH+GR+PPCA  +IE  I RV+  ++DP+ +VSGRGL  L
Sbjct: 62  ARSRGHDLRGATAYVTLEPCSHFGRTPPCANALIEAQIGRVIAAMEDPNPQVSGRGLAML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            + GI +   ++ +E +     +++R    R  + +K+A S D   G+    S  IT   
Sbjct: 122 REAGIEVRCGLLANEARELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGESQWITSAA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H  RA++ AIL GIGTV  D+P +T R        P R+++D    + LD++I+ 
Sbjct: 182 ARADGHAWRARASAILTGIGTVREDNPRMTVRAVD-TPRQPRRVLIDSQLDVPLDAQIL- 239

Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLL 291
               AP +I   + D      A A R++   I+         DL ++L++L  R V  L 
Sbjct: 240 --AGAPTLIFCGHLDARLEERASALRERGAEIVALPNAAGKVDLPRMLSVLGERNVNELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-----GIPSP-LEEGYLEKNFMCVRRDY 345
           VE G  +  S +    VD +++Y +  ++G        +PSP L E  ++ NF  + R  
Sbjct: 298 VEAGYKLNGSLLREGCVDELLVYLAPSLLGMDSMSMFNLPSPDLLEDRVKLNFHTIER-- 355

Query: 346 FGSDVCL 352
            G D+ +
Sbjct: 356 IGDDLRI 362


>gi|297569249|ref|YP_003690593.1| riboflavin biosynthesis protein RibD [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925164|gb|ADH85974.1| riboflavin biosynthesis protein RibD [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 368

 Score =  343 bits (879), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 131/361 (36%), Positives = 181/361 (50%), Gaps = 11/361 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           VS+ D  +M  AL  +R  VG TS NP V  ++VKDG V+GRG     G PHAE+ AL  
Sbjct: 2   VSATDQAYMKMALELARKGVGKTSPNPCVGAVLVKDGQVVGRGWHRRAGEPHAEINALAA 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ A GAT YVTLEPC+H GR+PPC++ I   GIRRVV  + DP+    G G     + 
Sbjct: 62  AGDLAGGATIYVTLEPCNHQGRTPPCSKAIEAAGIRRVVYGMSDPNPVAGGGGAYLAGRG 121

Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
             ++  ++  + +     +  R       + LK AVS D  I  A   S  ITG  ++ Q
Sbjct: 122 LEVLAGVLADDCRRLNLPFSKRVTTGYPWVQLKAAVSLDGRIAAATGRSKWITGEQARRQ 181

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LR  SDAILVG GTVLADDP LT RL G +   P+R+ILD        +K++     
Sbjct: 182 VHRLRCLSDAILVGSGTVLADDPSLTTRLPG-KGRDPLRVILDSKLATPPAAKVVAHDSA 240

Query: 243 APVIIVTENDDPV-LALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGA 296
           A   I    D         R+  + +            L ++L  L   GVT+LLVEGG 
Sbjct: 241 AATWIFCGPDAAESKERQLRRPGVEVHRVGLEADGTLRLVEVLEHLGRAGVTTLLVEGGG 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
            V  SF+   L D +I + + +++G  G+ +     L +         + R   G D+ +
Sbjct: 301 RVHGSFLRRGLADEVIFFIAPLLLGGDGMAAVSELGLADPSQAPRLHEIERRRCGDDLMI 360

Query: 353 E 353
            
Sbjct: 361 R 361


>gi|56414429|ref|YP_151504.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|168818973|ref|ZP_02830973.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|197363349|ref|YP_002142986.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|200389971|ref|ZP_03216582.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|56128686|gb|AAV78192.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094826|emb|CAR60359.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|199602416|gb|EDZ00962.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205344221|gb|EDZ30985.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320084692|emb|CBY94483.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 367

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 184/368 (50%), Gaps = 20/368 (5%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG 
Sbjct: 2   QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R   L               P+RI++D   +++  
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292
            +I++        I    +D   A     + I++   +   DL  L+  L  + + S+ V
Sbjct: 242 HRIVQQPGE--TWIARTQEDS-RAWPDSVRTISVPAHNGHLDLVVLMMQLGRQQINSIWV 298

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGS 348
           E G  +A + + + LVD +I+Y +  ++G           LE+      F      + G 
Sbjct: 299 EAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGP 358

Query: 349 DVCLEYIG 356
           DVCL  + 
Sbjct: 359 DVCLHMVS 366


>gi|168261151|ref|ZP_02683124.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205350075|gb|EDZ36706.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 367

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 125/367 (34%), Positives = 184/367 (50%), Gaps = 20/367 (5%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG 
Sbjct: 2   QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R   L               P+RI++D   +++  
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292
            +I++        I    +D   A     + I++   +   DL  L+  L  + + S+ V
Sbjct: 242 HRIVQQPGE--TWIARTQEDS-RAWPDSVRTISVPAHNGHLDLVVLMMQLGRQQINSIWV 298

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGS 348
           E G  +A + + + LVD +I+Y +  ++G           LE+      F      + G 
Sbjct: 299 EAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGP 358

Query: 349 DVCLEYI 355
           DVCL  +
Sbjct: 359 DVCLHMV 365


>gi|87308856|ref|ZP_01090995.1| riboflavin bifunctional biosynthesis protein RibG [Blastopirellula
           marina DSM 3645]
 gi|87288567|gb|EAQ80462.1| riboflavin bifunctional biosynthesis protein RibG [Blastopirellula
           marina DSM 3645]
          Length = 373

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 123/371 (33%), Positives = 185/371 (49%), Gaps = 13/371 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S+ D R M  AL+ +    G    NP V C++V+ G VIGRG  A  G PHAE  AL
Sbjct: 1   MQFSADDERHMREALQLAALGQGAAEPNPMVGCVLVQHGQVIGRGYHAKYGGPHAERAAL 60

Query: 61  EEAGEE-ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
            + G++   GATAYVTLEPC H+G++PPC   +I   + RVV+   DP   V G G+  L
Sbjct: 61  SDCGDKQVNGATAYVTLEPCCHHGKTPPCTDALIAAKVARVVIAQQDPFGLVDGGGIDQL 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++E+E +     Y       R  +  K A++ D  +      S  I+  +
Sbjct: 121 KAAGISVQVGLLEAEAQRLNAPYRKLLATGRPWVIAKWAMTLDGKLATHTGHSRWISNEL 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++ +VH LR + DAI+VG  T   DDP LT R  GL   +P+R+++D    LS   ++++
Sbjct: 181 ARERVHQLRGRMDAIVVGSRTAQLDDPLLTVRPAGL--RTPLRVVVDGDATLSPTHQLVQ 238

Query: 239 TALLAPVIIVT-ENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVE 293
           TA   PV++      DP    A ++    I      D    L  LL  L  R +T++LVE
Sbjct: 239 TAREVPVLVAVKAEADPARCAALQQAGCEIFAGGGADHGQRLDALLIELGQRRLTNILVE 298

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           GGA +   F+    +D +  + +  +IG    PSP+        +  +      SDV +E
Sbjct: 299 GGAGLLGQFLALGQIDEVFAFIAPKLIGGAQAPSPIGGDG----WSDMSEALALSDVSIE 354

Query: 354 YIGKNLCLQEL 364
            +G N+ +  L
Sbjct: 355 SLGDNVLMHGL 365


>gi|328472537|gb|EGF43400.1| riboflavin-specific deaminase [Vibrio parahaemolyticus 10329]
          Length = 374

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 184/377 (48%), Gaps = 30/377 (7%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P S  D   MS AL+ +R  +  T+ NP+V C+IV+DG++IG G     G PHAEV A+ 
Sbjct: 9   PFSPQDFSMMSRALKLARRGIYTTAPNPNVGCVIVRDGVIIGEGYHHRAGEPHAEVHAMR 68

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG++A GATAYVTLEPCSHYGR+PPCA+ +I+  + RVV  ++DP+ +V+GRG+Q L +
Sbjct: 69  MAGDKAEGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMEDPNPKVAGRGIQMLRE 128

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            G+ +   ++E++       ++         I LK+A S D    ++   S  IT   ++
Sbjct: 129 AGVEVQVGLLENDAIELNRGFIKFMQTGMPFIQLKMAASLDGQSALSNGKSQWITSPQAR 188

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFK 229
             V   RAQS  IL    TV+ D+  L  R + L +             P R+ILD   K
Sbjct: 189 QDVQCYRAQSGGILSTSKTVMDDNASLNVRWDDLPQSVQAHYELTEVRQPARVILDRQQK 248

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVT 288
           LS D K+  T     +I+ +E D              +      DL   L  +     + 
Sbjct: 249 LSDDLKLFSTEGE-RIIVSSEGD----------VCPQLDQSGKIDLAATLKAVATQHNIN 297

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRD 344
            L VE GA +A S I + LVD +I+Y +  ++G  G        L E     +       
Sbjct: 298 HLWVEAGATLASSLIKANLVDELIVYLAPKLMGSDGRGLIGALGLTEMAQVIDLNITDVR 357

Query: 345 YFGSDVCL--EYIGKNL 359
             G D+ +    + K +
Sbjct: 358 MVGRDIRITATLVRKEI 374


>gi|322614696|gb|EFY11625.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618802|gb|EFY15690.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322623509|gb|EFY20348.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322629193|gb|EFY25972.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322631913|gb|EFY28667.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322637350|gb|EFY34052.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322642035|gb|EFY38645.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322647854|gb|EFY44329.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322652532|gb|EFY48886.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322653306|gb|EFY49639.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322660545|gb|EFY56781.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322664697|gb|EFY60890.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322669250|gb|EFY65400.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322670795|gb|EFY66928.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322678966|gb|EFY75021.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322681994|gb|EFY78019.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322685177|gb|EFY81174.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323194475|gb|EFZ79670.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323196988|gb|EFZ82130.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323203973|gb|EFZ88990.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323206942|gb|EFZ91895.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323210840|gb|EFZ95712.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323214531|gb|EFZ99282.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323223088|gb|EGA07431.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323227037|gb|EGA11218.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323230145|gb|EGA14265.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323233883|gb|EGA17972.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323238423|gb|EGA22481.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323244111|gb|EGA28120.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323246271|gb|EGA30254.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323251897|gb|EGA35760.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323257894|gb|EGA41573.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323261093|gb|EGA44685.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323264977|gb|EGA48476.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323272540|gb|EGA55947.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 367

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 184/368 (50%), Gaps = 20/368 (5%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG 
Sbjct: 2   QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHQRAGEPHAEVHALRMAGA 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQSGIA 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R   L               P+RI++D   +++  
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292
            +I++        I    +D   A     + I++   +   DL  L+  L  + + S+ V
Sbjct: 242 HRIVQQPGE--TWIARTQEDS-RAWPDSVRTISVPAHNGHLDLVVLMMQLGRQQINSIWV 298

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGS 348
           E G  +A + + + LVD +I+Y +  ++G           LE+      F      + G 
Sbjct: 299 EAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGP 358

Query: 349 DVCLEYIG 356
           DVCL  + 
Sbjct: 359 DVCLHMVS 366


>gi|168465506|ref|ZP_02699388.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195631795|gb|EDX50315.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 367

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG 
Sbjct: 2   QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEVEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R   L               P+RI++D   +++  
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++       I  T+ D      A R  ++   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE-TWIARTQEDSRAWPDAVRTISV-PAHNGHLDLVVLMMQLGRQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  + 
Sbjct: 360 VCLHMVS 366


>gi|121602090|ref|YP_988935.1| riboflavin biosynthesis protein RibD [Bartonella bacilliformis
           KC583]
 gi|120614267|gb|ABM44868.1| riboflavin biosynthesis protein RibD [Bartonella bacilliformis
           KC583]
          Length = 374

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 152/375 (40%), Positives = 223/375 (59%), Gaps = 12/375 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI----VIGRGVTAYGGCPHAE 56
           M   + D RFM+AA+R +  HVGLT+ NPSV  LIV++      ++G GVTA  G PHAE
Sbjct: 1   MNKKAQDCRFMAAAIRLAERHVGLTNENPSVGALIVRNDSTGPFIVGYGVTALRGRPHAE 60

Query: 57  VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           VQAL+ AG  ++GATAY+TLEPC HYG++ PC   +I+ GI RVV+ + DPD RV GR +
Sbjct: 61  VQALQMAGPLSKGATAYITLEPCVHYGKTSPCVDSLIDAGIARVVIALIDPDERVCGRSI 120

Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
             L    I +V  ++E E    L AYL  +  KR  +TLK+A+S DN +G  G G V I+
Sbjct: 121 ALLQAADIEVVKGVLEKESSEMLSAYLCTKKLKRCEVTLKMAISADNGVGKKGQGGVKIS 180

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
           G  S    H+LRAQ +AI+VGI T+LADDP+LTCRL GL+  SP+R+ILD   ++ +D+K
Sbjct: 181 GATSHTYTHILRAQHNAIMVGIRTILADDPQLTCRLQGLEMRSPIRVILDKDLRIPMDAK 240

Query: 236 IIKTALLAPVIIVTEN--DDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTS 289
           +I+TA   P  ++ +    +    +   +  + +   +  +       +L +L   G+ S
Sbjct: 241 VIQTATQVPTWVICDATLSNQSKKMKLEQYGVCVHSIEISNNFMQPLAILQLLCQLGINS 300

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           +L+EGGA     F+N+  VD +I + + +++GE  I +P  E YL + F  +      +D
Sbjct: 301 VLLEGGAETGEKFLNAGCVDHLICFYASVILGENRIKAPYFETYLSE-FNEIETKMLEND 359

Query: 350 VCLEYIGKNLCLQEL 364
               +  K LC Q L
Sbjct: 360 RLRRWRRKILCSQGL 374


>gi|312963303|ref|ZP_07777786.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens WH6]
 gi|311282383|gb|EFQ60981.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens WH6]
          Length = 378

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 122/358 (34%), Positives = 179/358 (50%), Gaps = 17/358 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            DA +M+ AL  +R  +  T  NP V C+IV+DG ++G G     G PHAEV AL  AG+
Sbjct: 11  LDAHYMARALELARNGLYTTHPNPRVGCVIVRDGQIVGEGWHERTGQPHAEVHALRAAGD 70

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +ARGATAYVTLEPCSHYG +PPCA  ++  G+ RVV  + DP+  V+GRG+Q L+Q GI 
Sbjct: 71  KARGATAYVTLEPCSHYGHTPPCADALVSAGLARVVAAMQDPNPEVAGRGMQRLAQAGIE 130

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   ++E E +     +L R       + +K+A+S D    MA   S  ITG  ++  V 
Sbjct: 131 VRSGVLEGEARALNRGFLKRMEHGLPFVRVKMAMSLDGRTAMASGESQWITGPAARAAVQ 190

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDS 234
            LRA++  +L G  TVLAD   LT R   L              P+R+++D   ++ L++
Sbjct: 191 RLRAEASVVLTGADTVLADGARLTVRAAELGLDAETTALVMSRPPLRVLIDGRLRVPLNA 250

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
              K     P +++T            +  +        DL+  L  L  RGV  +LVE 
Sbjct: 251 PFFK---AGPALVITCVTAQNQFPRGPECLVVPGVEGQVDLRSALVALAARGVNEVLVEA 307

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSD 349
           G ++A +F    LVD  +++ +   +G    P    PLE+               G D
Sbjct: 308 GPSLAGAFAQQGLVDEYVIFVAGKFLGCAARPLLDWPLEKLADAPQLKITEMRAVGDD 365


>gi|239998220|ref|ZP_04718144.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Neisseria gonorrhoeae 35/02]
 gi|268594076|ref|ZP_06128243.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae 35/02]
 gi|268547465|gb|EEZ42883.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae 35/02]
          Length = 369

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 125/365 (34%), Positives = 185/365 (50%), Gaps = 11/365 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  +   M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +
Sbjct: 2   FSDTNISMMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALHQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   
Sbjct: 62  AGEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  +  ++E++ +     +L+R   +R  + LK AVS D    ++   S  ITG  ++ 
Sbjct: 122 GIKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V +LRA+S A+L GIGTVLAD+P L  R        P RI+LD   +L  +S ++    
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPNSHLVTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGA 296
               I   E D+  L       +I I+          DL  L+ +L   G   ++VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +  +F+   L D I+LYRS  ++G G     +P           +  V  +  G D+  
Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGGGKDLFSLPENRAALSAPPLWTPVSTEILGHDIKT 360

Query: 353 EYIGK 357
            +   
Sbjct: 361 VFRKN 365


>gi|240079985|ref|ZP_04724528.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Neisseria gonorrhoeae FA19]
 gi|268596126|ref|ZP_06130293.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae FA19]
 gi|268549914|gb|EEZ44933.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae FA19]
          Length = 369

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 127/366 (34%), Positives = 188/366 (51%), Gaps = 13/366 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  +   M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +
Sbjct: 2   FSDTNISMMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   
Sbjct: 62  AGEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  +  ++E++ +     +L+R   +R  + LK AVS D    ++   S  ITG  ++ 
Sbjct: 122 GIKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V +LRA+S A+L GIGTVLAD+P L  R        P RI+LD   +L  DS+++ T  
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPDSRLL-TDG 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGG 295
            +P +I T   +      +RK     I           DL  L+ +L   G   ++VE G
Sbjct: 240 QSPTLIATLERNEDRLRPYRKHAHVRILMPSETADGKIDLHHLIRLLADEGFGEIMVEAG 299

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           + +  +F+   L D I+LYRS  ++G G     +P           +  V  +  G D+ 
Sbjct: 300 SELTSAFLAENLADEIVLYRSPKILGGGKDLFSLPENRAALSAPPLWTPVSSEILGHDIK 359

Query: 352 LEYIGK 357
             +   
Sbjct: 360 TVFRKN 365


>gi|323491728|ref|ZP_08096906.1| riboflavin-specific deaminase [Vibrio brasiliensis LMG 20546]
 gi|323314090|gb|EGA67176.1| riboflavin-specific deaminase [Vibrio brasiliensis LMG 20546]
          Length = 368

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 120/368 (32%), Positives = 179/368 (48%), Gaps = 28/368 (7%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             +S D + MS A+  ++  +  T+ NP+V C+I +DG ++G G     G PHAEV AL 
Sbjct: 3   TFTSQDFKMMSRAIELAKGGIYTTAPNPNVGCVITRDGEIVGEGFHYRAGEPHAEVHALR 62

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AGE++ GATAYVTLEPCSHYGR+PPCA+ +I+  + +V+  + DP+ +V+GRG+Q L  
Sbjct: 63  MAGEKSVGATAYVTLEPCSHYGRTPPCAEGLIKAKVAKVICAMQDPNPQVAGRGIQMLRD 122

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +   ++E +      A++ R       + LK+A S D    +A   S  IT   ++
Sbjct: 123 AGIEVEVGLLEQDAINLNPAFIKRMKTAMPFVQLKMAASLDGQTALANGQSQWITSSKAR 182

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFK 229
             V   RAQS AIL    TV+ D+  L  R + L +             P+R+ILD    
Sbjct: 183 QDVQKYRAQSGAILSTSKTVIDDNASLNVRWDDLPQSVQSHYPEQQLRQPVRVILDRQGL 242

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVT 288
           L+ + K+  T      +IV E  D  L L    +          DL+     L     + 
Sbjct: 243 LTPELKLFNTEGGR--LIVAEQGDVELQLNTEHQ---------VDLRATFADLANKHNIN 291

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRD 344
            L VE GA +A S I + LVD ++LY +  ++G  G       G                
Sbjct: 292 HLWVEAGATLASSLIKADLVDELVLYLAPKIMGSDGRGLLGALGLESMAEVIELDIKDIR 351

Query: 345 YFGSDVCL 352
             GSD+ +
Sbjct: 352 QVGSDIRI 359


>gi|260899221|ref|ZP_05907616.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           AQ4037]
 gi|308106651|gb|EFO44191.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           AQ4037]
          Length = 374

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 128/376 (34%), Positives = 188/376 (50%), Gaps = 28/376 (7%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P S  D   MS AL+ +R  +  T+ NP+V C+IV+DG++IG G     G PHAEV A+ 
Sbjct: 9   PFSPQDFSMMSRALKLARRGIYTTAPNPNVGCVIVRDGVIIGEGYHHRAGEPHAEVYAMR 68

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG++A GATAYVTLEPCSHYGR+PPCA+ +I+  + RVV  ++DP+ +V+GRG+Q L +
Sbjct: 69  MAGDKAEGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMEDPNPKVAGRGIQMLRE 128

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            G+ +   ++E++       ++         I LK+A S D    ++   S  IT   ++
Sbjct: 129 AGVEVQVGLLENDAIELNRGFIKFMQTGMPFIQLKMAASLDGQSALSNGKSQWITSPQAR 188

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFK 229
             V   RAQS  IL    TVL D+  L  R + L +             P R+ILD   K
Sbjct: 189 QDVQRYRAQSGGILSTSKTVLDDNASLNVRWDDLPQSVQAHYELTEVRQPARVILDRQQK 248

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
           LS D K+  T      IIV+   D    L    K I++       LK ++T      +  
Sbjct: 249 LSDDLKLFSTEGER--IIVSSEGDVCPQLDQSGK-IDVTAT----LKAVVT---QHNINH 298

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDY 345
           L VE GA +A S I + LVD +I+Y +  ++G  G        L E     +        
Sbjct: 299 LWVEAGATLASSLIKANLVDELIVYLAPKLMGSDGRGLIGALGLTEMAQVIDLNITDVRM 358

Query: 346 FGSDVCL--EYIGKNL 359
            G D+ +    + K +
Sbjct: 359 VGRDIRITATLVRKEI 374


>gi|187925073|ref|YP_001896715.1| riboflavin biosynthesis protein RibD [Burkholderia phytofirmans
           PsJN]
 gi|187716267|gb|ACD17491.1| riboflavin biosynthesis protein RibD [Burkholderia phytofirmans
           PsJN]
          Length = 383

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 187/367 (50%), Gaps = 23/367 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  ++  +  T  NP V C++VK+G VIG G T   G  HAE++AL++
Sbjct: 2   FSQTDFVHMERALALAKRGMYTTDPNPRVGCVLVKNGEVIGEGFTQPAGQDHAEIRALKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + RGATAYVTLEPCSH+GR+PPCA  +IE  + RVV  ++DP+ +VSGRGL  L
Sbjct: 62  ARSRGHDLRGATAYVTLEPCSHFGRTPPCANALIEAQVARVVAAMEDPNPQVSGRGLAML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++  E       +++R    R  + +K+A S D   G+    S  ITG  
Sbjct: 122 RDAGIEVRCGLLAHEAHELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGDSQWITGEA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H  RA++ AIL GIGTV  D+P +T R        P R+++D    +  D++I+ 
Sbjct: 182 ARADGHAWRARASAILTGIGTVREDNPRMTVRAVD-TPRQPQRVLIDSQLDVPPDAQILA 240

Query: 239 TALLAPVIIVTENDD---PVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291
            A     +I   N D      A A R +   I+         DL  +L +L  R V  L 
Sbjct: 241 GAS---TLIFCGNLDGRHTDRAAALRDRGAEIVQLANPAGKVDLPAVLKVLGQRNVNELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-----GIPSP-LEEGYLEKNFMCVRRDY 345
           VE G  +  S +    VD +++Y +  ++G        + +P   EG ++ NF  V  D 
Sbjct: 298 VEAGYKLNGSLLREGCVDELLVYLAPSLLGMDSMSMFNLSAPETLEGRVKLNFHAV--DR 355

Query: 346 FGSDVCL 352
            G DV +
Sbjct: 356 IGEDVRI 362


>gi|294788324|ref|ZP_06753567.1| riboflavin biosynthesis protein RibD [Simonsiella muelleri ATCC
           29453]
 gi|294483755|gb|EFG31439.1| riboflavin biosynthesis protein RibD [Simonsiella muelleri ATCC
           29453]
          Length = 363

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 121/358 (33%), Positives = 186/358 (51%), Gaps = 11/358 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +      TS NP V C+I     ++G+G     G PHAEV AL +
Sbjct: 5   FSDLDHAHMHRALELAWQGRFSTSPNPRVGCVIAHGEQIVGQGFHVKAGEPHAEVHALRQ 64

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  A+GATAYVTLEPC+HYGR+PPCA+ + E G+ RVV  + DP+  V+G+GL  L+  
Sbjct: 65  AGSLAQGATAYVTLEPCAHYGRTPPCAESLRESGVARVVAAMRDPNPLVAGKGLAILTAA 124

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +   ++E + +     +L+R   KR  I+LK+A S D    ++   S  ITG ++++
Sbjct: 125 GVLVECGLLEHKARELNRGFLSRIERKRPFISLKMAASFDGKTALSDGCSKWITGELARS 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V  LRAQS AIL GIGT+LAD+P+L  R        P+R+ILD +F+L   S++++   
Sbjct: 185 DVQQLRAQSCAILTGIGTILADNPQLNVR-QFNTLRQPIRVILDSYFRLPEKSQVVQDDG 243

Query: 242 LAPVIIVTENDDPVLALAFRKKNI--NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
                + T  D P     +    +          +L  +  IL   GV  +L+E G  +A
Sbjct: 244 E--TWLFTLTDTPSWVAKYENLRVFRQPEKIAQLNLHWVSEILAQNGVGEVLLEAGQTLA 301

Query: 300 HSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +F+ + LVD I+ ++S  ++G        +P          ++  +     G D+  
Sbjct: 302 TAFLQADLVDEIVYFQSPKILGNTARGIFKLPENPTVLTKSPDWRTISVTSIGDDIKW 359


>gi|16763796|ref|NP_459411.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|161615396|ref|YP_001589361.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167992266|ref|ZP_02573364.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168240239|ref|ZP_02665171.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194442362|ref|YP_002039658.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194449088|ref|YP_002044451.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197264648|ref|ZP_03164722.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|224582254|ref|YP_002636052.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|16418920|gb|AAL19370.1| pyrimidine deaminase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|161364760|gb|ABX68528.1| hypothetical protein SPAB_03167 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401025|gb|ACF61247.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194407392|gb|ACF67611.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197242903|gb|EDY25523.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205329484|gb|EDZ16248.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205339872|gb|EDZ26636.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|224466781|gb|ACN44611.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261245699|emb|CBG23495.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267992127|gb|ACY87012.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301157027|emb|CBW16510.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312911449|dbj|BAJ35423.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321225143|gb|EFX50204.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323128735|gb|ADX16165.1| Riboflavin biosynthesis protein ribD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332987364|gb|AEF06347.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 367

 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG 
Sbjct: 2   QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R   L               P+RI++D   +++  
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++       I  T+ D      A R  ++   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE-TWIARTQEDSRAWPDAVRTISV-PAHNGHLDLVVLMMQLGRQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  + 
Sbjct: 360 VCLHMVS 366


>gi|73748880|ref|YP_308119.1| riboflavin biosynthesis protein RibD [Dehalococcoides sp. CBDB1]
 gi|147669641|ref|YP_001214459.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Dehalococcoides sp. BAV1]
 gi|73660596|emb|CAI83203.1| riboflavin biosynthesis protein RibD [Dehalococcoides sp. CBDB1]
 gi|146270589|gb|ABQ17581.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Dehalococcoides sp. BAV1]
          Length = 365

 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 126/358 (35%), Positives = 182/358 (50%), Gaps = 15/358 (4%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           ++MS AL  ++  +G  S NPSV  +IVK+G V+G+G T   G  HAE+ AL++A E+A+
Sbjct: 2   KYMSQALSLAKLAIGQVSPNPSVGAVIVKNGEVVGQGFTQPPGGDHAEIVALKQAAEKAK 61

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127
           GAT YVTLEPC H GR+PPC   +I  GI+ V +   D +  VSG+G + L   GI V  
Sbjct: 62  GATLYVTLEPCCHQGRTPPCTGSVIASGIKEVYIATLDDNPLVSGKGKKELEDAGIKVHL 121

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            MME E +    AY          +T K A+S D   G     S  I+   S++  H +R
Sbjct: 122 GMMEREARQMNEAYFKHVTTGMPFVTAKYAMSLDGKTGTRTGDSKWISNEESRHFAHYIR 181

Query: 188 AQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
             SD I+ G+ T+L DDP LT R+N    G     P R+I+D + +  L S +       
Sbjct: 182 HISDVIMAGLNTILKDDPHLTARVNCGRGGTSHSQPTRVIIDDNGRAPLSSNVFHVPGN- 240

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVA 299
            ++ V +   P    A+ +    ++         DLK LL  L   GVTS+LVEGG  V 
Sbjct: 241 TIVAVAKGLTPEEKQAYDEVGAKVVELPDERGLVDLKALLRYLGQNGVTSVLVEGGGIVL 300

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCL 352
            S  + +LVD ++++ + I+IG      P+     E       F  +    FG DV +
Sbjct: 301 GSLFDLKLVDKVLVFVAPIIIGGKDAKIPVAGVGAELITDSAKFKDITTTIFGQDVLI 358


>gi|167551773|ref|ZP_02345526.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205323400|gb|EDZ11239.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 367

 Score =  342 bits (877), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 125/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG 
Sbjct: 2   QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R   L               P+RI++D   +++  
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWTELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++       I  T+ D      + R  ++   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE-TWIARTQGDSRAWPDSVRTISV-PAHNGHLDLVVLMMQLGRQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  + 
Sbjct: 360 VCLHMVS 366


>gi|16759393|ref|NP_455010.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29142835|ref|NP_806177.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213427850|ref|ZP_03360600.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|213650168|ref|ZP_03380221.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
 gi|213855380|ref|ZP_03383620.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
 gi|289825059|ref|ZP_06544411.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|25331497|pir||AH0553 riboflavin biosynthesis protein RibD [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16501684|emb|CAD08872.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138467|gb|AAO70037.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 367

 Score =  342 bits (877), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 125/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG 
Sbjct: 2   QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R   L               P+RI++D   +++  
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++       I  T+ D      + R  ++   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE-TWIARTQEDSHAWPDSVRTISV-PAHNGHLDLVVLMMQLGRQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  + 
Sbjct: 360 VCLHMVS 366


>gi|256369199|ref|YP_003106707.1| riboflavin biosynthesis protein RibD [Brucella microti CCM 4915]
 gi|255999359|gb|ACU47758.1| riboflavin biosynthesis protein RibD [Brucella microti CCM 4915]
          Length = 373

 Score =  342 bits (877), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 168/358 (46%), Positives = 229/358 (63%), Gaps = 7/358 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM A +R++R H GLT TNPSV  +IVKDG+++GRGVTA GG PHAE QAL E GE 
Sbjct: 15  DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPC+H+GR+PPCA+ ++  G+ RVVV   DPD RVSG+G   L + GI +
Sbjct: 75  ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++  +    L  YL R   KR  + LK+A+S D MIG  G G V ITG +S+ Q H+
Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD   +L L S+++++A   P+
Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254

Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
            +    + P     A       I+  +  D    L +LL  L  +G+ S+LVEGGA VA 
Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314

Query: 301 SFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           SF++ +LVD +I++RS +VIG   G+     E ++   F  +RR  +  D C EY+  
Sbjct: 315 SFLDKKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYVRN 372


>gi|86609303|ref|YP_478065.1| riboflavin biosynthesis protein RibD [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557845|gb|ABD02802.1| riboflavin biosynthesis protein RibD [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 370

 Score =  342 bits (877), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 111/359 (30%), Positives = 179/359 (49%), Gaps = 11/359 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D ++M   L  +R      S NP V+C+IV+   V+G GV    G PHAEV AL++AG  
Sbjct: 4   DQQWMERCLSLARSTPQRPSPNPRVSCVIVQGDRVVGEGVHPGAGQPHAEVLALQQAGSL 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGAT YV LEPC+HYGR+PPC + I+  GIRRVVV + DP+  V+G+G++ L + GI +
Sbjct: 64  ARGATLYVNLEPCNHYGRTPPCTEAILAAGIRRVVVGMQDPNPLVAGKGIRRLQEAGIDV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E +     +    V ++    LK A++ D     A   S  I+   ++  VH 
Sbjct: 124 TVGVLERECQELNEGFAFAIVRQQCFGLLKYAMTLDGKSAAATGHSRWISNSPARQWVHQ 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            RA  DA++VG  TV  D+P LTCRL  LQ   P+R++L     L   + + +      +
Sbjct: 184 QRAWHDAVIVGSRTVWQDNPRLTCRLAELQGSQPLRVVLSRSLNLPPVAHLWQVEEAPTL 243

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           +I        L  +  K+ + +++       +   +L  RG  S L E G  +A + +  
Sbjct: 244 VITEAVATHPLWGSLAKQGVELLHLPQVTPSRAAQVLFQRGCLSALWECGGTLAWAALKD 303

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLE---KNFMCVRRDYFGSDVCLEYIGKNLCL 361
             +  +  + +  ++G    P+P+    +    +++  V          LE +G N  +
Sbjct: 304 GAIQKVAAFIAPKILGGAAAPTPVAGEGIPDVNQSWQLVEPR-------LETLGDNWLI 355


>gi|254467350|ref|ZP_05080761.1| riboflavin biosynthesis protein RibD [Rhodobacterales bacterium
           Y4I]
 gi|206688258|gb|EDZ48740.1| riboflavin biosynthesis protein RibD [Rhodobacterales bacterium
           Y4I]
          Length = 365

 Score =  342 bits (877), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 132/362 (36%), Positives = 189/362 (52%), Gaps = 11/362 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D R+M+ AL   R   G    NP+V C+IVK   ++GRG T  GG PHAE +AL +AG
Sbjct: 2   DTDHRYMALALSLGRRGQGNCWPNPAVGCVIVKGRRIVGRGWTKPGGRPHAETEALAQAG 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGATAYVTLEPC+H G +PPCAQ +I+ G+ RVV  + D D RVSG+G++ L   GI
Sbjct: 62  EAARGATAYVTLEPCAHQGATPPCAQALIKAGVARVVAAIGDSDPRVSGQGIRMLRDAGI 121

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   +  ++       +  +  + R  +TLK+A S D  I      S  ITG  ++  V
Sbjct: 122 RVDTGVWGAQAARDHAGFFLKTEQGRPLVTLKLASSFDGRIATGSGKSKWITGPEARRAV 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H +RA+ DA++VG GT  ADDP LT R  G+ E  P+R+++  H  L L  ++ +TA   
Sbjct: 182 HAMRARHDAVMVGGGTARADDPSLTVRDLGV-ERQPVRVVISRHLDLPLMGQLARTAKKV 240

Query: 244 PVIIVTE-NDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298
           PV +      D     A+      +I C       D   +L  L   G+T +  EGG+A+
Sbjct: 241 PVWLCHGHGADQERIQAWEGLGAKLIPCASHGVQLDAVDVLQQLGQAGLTRVFCEGGSAL 300

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           A S +   LVD +I + + + IG  G+PS     +        F  V     G D+   +
Sbjct: 301 AASLLAFDLVDELIGFTAGLGIGAEGLPSIGALGIGRLEEAPRFELVETRPLGGDILHRW 360

Query: 355 IG 356
             
Sbjct: 361 TR 362


>gi|15964963|ref|NP_385316.1| riboflavin biosynthesis protein [Sinorhizobium meliloti 1021]
 gi|307301034|ref|ZP_07580803.1| riboflavin biosynthesis protein RibD [Sinorhizobium meliloti
           BL225C]
 gi|307317768|ref|ZP_07597206.1| riboflavin biosynthesis protein RibD [Sinorhizobium meliloti AK83]
 gi|15074142|emb|CAC45789.1| Probable riboflavin biosynthesis protein (deaminase/reductase)
           [Sinorhizobium meliloti 1021]
 gi|20385601|gb|AAM21351.1| riboflavin-specific deaminase/reductase [Sinorhizobium meliloti]
 gi|306896530|gb|EFN27278.1| riboflavin biosynthesis protein RibD [Sinorhizobium meliloti AK83]
 gi|306903989|gb|EFN34575.1| riboflavin biosynthesis protein RibD [Sinorhizobium meliloti
           BL225C]
          Length = 401

 Score =  342 bits (877), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 181/396 (45%), Positives = 237/396 (59%), Gaps = 46/396 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM+AALR +R ++GLTSTNPSV C+IV  G ++GR VTA GG PHAE QAL EAGE+
Sbjct: 8   DERFMAAALRLARRNLGLTSTNPSVGCIIVNKGTIVGRAVTAPGGRPHAETQALAEAGEK 67

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYV LEPCSH+G++PPCA  +I  G+ RVVV + DPD RV+GRG+  L   GI +
Sbjct: 68  ARGATAYVALEPCSHHGKTPPCADALIASGVGRVVVSILDPDERVAGRGVVMLRGAGIDV 127

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
               +  EG   L AYL RQ +KR H+TLK+AVS D MIG  G G V I+G +S+ QV +
Sbjct: 128 DIGTLHEEGGRVLEAYLMRQRKKRPHVTLKLAVSADGMIGRRGEGQVRISGAVSRAQVQV 187

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRA++DAILVGIGT +ADDPELT R+ GL+E SP+RI+LD    L L+SK+++TA   P+
Sbjct: 188 LRAETDAILVGIGTAIADDPELTVRMPGLEERSPVRIVLDRRLDLPLESKLVRTARDVPL 247

Query: 246 IIVTEN-------------------------------------------DDPVLALAFRK 262
           I+VT +                                           D      A   
Sbjct: 248 IVVTGDAGYPSSHEQGAGARRADEGQSSLPLSSGSTREPVLSPLAEAGTDYDARRGALEA 307

Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
               ++  D   +  LL  L  RG++SLLVEGGA  A SF+++ LVD I+L+     IGE
Sbjct: 308 AGAELLSADT--IPDLLAALASRGISSLLVEGGARAARSFLDADLVDRILLFTGPAAIGE 365

Query: 323 GGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           GGI SP +   + + F   R   +G D+  +Y   +
Sbjct: 366 GGISSPFQRTSVPEGFTLRRTARYGDDIFEDYERDS 401


>gi|298369934|ref|ZP_06981250.1| riboflavin biosynthesis protein RibD [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298281394|gb|EFI22883.1| riboflavin biosynthesis protein RibD [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 367

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 129/359 (35%), Positives = 191/359 (53%), Gaps = 13/359 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D R M  AL  +R     TS NP V C+I   G ++G+G     G PHAEV AL +AG
Sbjct: 4   ENDVRMMQNALALARLGRFSTSPNPRVGCVIAHGGQIVGQGFHVKAGEPHAEVHALRQAG 63

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGATAYVTLEPCSHYGR+PPCA+ +I  G+ RVV  + DP+  V+G+GL  L    I
Sbjct: 64  EMARGATAYVTLEPCSHYGRTPPCAEALIRSGVARVVAAMTDPNPLVAGKGLAMLEAADI 123

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
             +  ++E+E +     +L+R    R  + +K A S D    ++   S  ITG  ++  V
Sbjct: 124 RTESGLLETEARELNRGFLSRIERGRPFVRIKCAASLDGKTALSDGLSKWITGEAAREDV 183

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
            +LRA+S A++ G+GTVLAD+P+L  R        P+R+I D   +   D +II+    +
Sbjct: 184 QILRAESCAVVTGVGTVLADNPQLNVR-AFPTVRQPVRVIADSRLQTPPDCRIIRDGG-S 241

Query: 244 PVIIVTENDDPVLALAF-RKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298
           PV+I T + D     AF R  ++ II    +    DL  LL IL  +G   ++VE GA +
Sbjct: 242 PVLIATLSQDADRLNAFSRFPHVEIIRPSEKDGRIDLADLLKILAAKGCGEVMVEAGAVL 301

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           + +F+   L D ++LY++  ++G  G     +P           +     +  G D+  
Sbjct: 302 SSAFLAEDLADELVLYQAPKILGCPGRSMFTLPENPAALTESPCWETRSVETLGGDIKW 360


>gi|170725743|ref|YP_001759769.1| riboflavin biosynthesis protein RibD [Shewanella woodyi ATCC 51908]
 gi|169811090|gb|ACA85674.1| riboflavin biosynthesis protein RibD [Shewanella woodyi ATCC 51908]
          Length = 379

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 192/377 (50%), Gaps = 29/377 (7%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S  D   MS A++ +R  +  T  NP V C++ KDG ++G G     G PHAEV AL
Sbjct: 1   MNWSVEDIEMMSRAIKLARQGLYTTQPNPCVGCVVTKDGQILGEGFHIKAGGPHAEVHAL 60

Query: 61  EEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
             A  +    A+GATAYVTLEPCSHYGR+PPCA+ +I   + RVVV V+DP+ +V GRG+
Sbjct: 61  AMANSDSNLGAKGATAYVTLEPCSHYGRTPPCAEALIHNKLARVVVAVEDPNPQVCGRGI 120

Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
             L   GI +   +++ E       ++ R       +T+K+A S D    +A   S  IT
Sbjct: 121 AMLRDAGIQVDVGLLQDEAYKINPGFMKRMETGLPWVTVKLASSLDGKTALANGASKWIT 180

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILD 225
           G  ++  V  LRA+  A++ G+ T+LAD+P L  R + L            H P+R++LD
Sbjct: 181 GPEARRDVQRLRARHCALVTGVETILADNPSLNVRHSELGSLADRHSESDLHQPLRVVLD 240

Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLT 280
              +++ D  +   A+ +P+++V+ +D P +       ++  +  +C      DL +L  
Sbjct: 241 SRARVTSDLALF--AIESPILLVSCDDYPAIEQQSWPSHVKQVKLNCDESGRVDLNELFK 298

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLE 335
            L  +   S+L+E GA +A S I     D ++LY++  ++G  G     +P       + 
Sbjct: 299 YLG-KQCNSVLIEAGATLAGSVIAKGHGDELVLYQALKMLGSSGRNLITLPEYTAMSQIP 357

Query: 336 KNFMCVRRDYFGSDVCL 352
                V     G+D  L
Sbjct: 358 A-IKLVDERKVGADTRL 373


>gi|213163224|ref|ZP_03348934.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 367

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 125/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG 
Sbjct: 2   QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R   L               P+RI++D   +++  
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++       I  T+ D      + R  ++   +    DL  L+  L  + + S+ VE
Sbjct: 242 YRIVQQPGE-TWIARTQEDSHAWPDSVRTISV-PAHNGHLDLVVLMMQLGRQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  + 
Sbjct: 360 VCLHMVS 366


>gi|94311620|ref|YP_584830.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Cupriavidus metallidurans CH34]
 gi|93355472|gb|ABF09561.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Cupriavidus metallidurans CH34]
          Length = 373

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 120/371 (32%), Positives = 189/371 (50%), Gaps = 17/371 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S+ D   M  AL  +   +  T+ NP V C+++KDG+VIG G T   G  HAE+QA+++
Sbjct: 2   FSAADYTAMEQALALAARGMFTTTPNPRVGCVLMKDGVVIGEGYTQPAGQDHAEIQAMKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G +  GATAYVTLEPCSH+GR+PPCA  ++  GI RVV  ++DP+  VSGRGLQ L
Sbjct: 62  AISRGHDPAGATAYVTLEPCSHFGRTPPCADALVRAGIARVVAAMEDPNPTVSGRGLQRL 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++E E +     +++R       + +K+A S D    +    S  ITG  
Sbjct: 122 RDAGIDVRCGLLEKEARDLNIGFISRMTRGLPWVRVKVAASLDGGTALHDGTSQWITGQP 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           +++  H  RA++ AIL GIGTV  D+P LT R        P R+++D   ++ LD++I+ 
Sbjct: 182 ARDDGHAWRARACAILTGIGTVRDDNPALTVR-AIPTPRQPQRVLVDSRLEVPLDAQILN 240

Query: 239 ---TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLL 291
                   PV++    +D     A   + + ++         +L+++L  L  RG+  L 
Sbjct: 241 RDTGDFAKPVLVFCAIEDKARQRALEARGVEVVVLPNPHGKVELRRMLEELARRGINELH 300

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFG 347
           VE G  +  S I     D +++Y +  ++G+      +P PL +      F        G
Sbjct: 301 VEAGFKLNGSLIREGCADELLVYLAPKLLGDAQGMFNLP-PLSKLEDATEFRWHEVRQIG 359

Query: 348 SDVCLEYIGKN 358
            D+ L     +
Sbjct: 360 DDLRLIARRAD 370


>gi|229916731|ref|YP_002885377.1| riboflavin biosynthesis protein RibD [Exiguobacterium sp. AT1b]
 gi|229468160|gb|ACQ69932.1| riboflavin biosynthesis protein RibD [Exiguobacterium sp. AT1b]
          Length = 354

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 126/352 (35%), Positives = 190/352 (53%), Gaps = 7/352 (1%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            ++M  A++ ++   G T  NP V  ++VKDG ++G G     G PHAEV A+  AG  A
Sbjct: 2   KQYMEQAIQLAKSADGQTGVNPLVGAVLVKDGRIVGMGAHLKAGEPHAEVHAIRMAGAAA 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            GAT YVTLEPCSH+G++PPCA  I+E GI+RVV+ + DP+  V+G G+  L   G+ VD
Sbjct: 62  YGATLYVTLEPCSHHGKTPPCADLIVESGIKRVVIAMKDPNPLVAGNGIMRLQAAGVEVD 121

Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++E+E +    A+L     KR ++ LK A S D  + +    S  +T   ++  VH L
Sbjct: 122 VGLLEAEARALNPAFLRSLETKRPYVILKTATSLDGKVALETGESQWVTSSEARRDVHEL 181

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA  DAIL GIGTVLADDP LT RL+ +    P R++LD   +L   S + +TA   PV+
Sbjct: 182 RATVDAILTGIGTVLADDPSLTVRLDRVT-RQPKRVVLDRDLRLPFASTLARTAEDVPVL 240

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           + T +D+       +   I +   D   L  +L  L   G+  +L+E G  +  S ++  
Sbjct: 241 LFTSSDEAERRERAKAAGIELF--DYTSLGTVLETLYANGIGRVLIEAGPTLVTSLLDGG 298

Query: 307 LVDSIILYRSQIVIGEG-GIPSPLEEGYLE--KNFMCVRRDYFGSDVCLEYI 355
            VD  + Y+S  V G   G+    +EG ++    F   + +  G D+ +   
Sbjct: 299 YVDEWVAYQSPRVFGGKHGVYRSQQEGTIDGISRFTIHQVETIGPDLKVVLR 350


>gi|209964642|ref|YP_002297557.1| riboflavin biosynthesis protein RibD [Rhodospirillum centenum SW]
 gi|209958108|gb|ACI98744.1| riboflavin biosynthesis protein RibD [Rhodospirillum centenum SW]
          Length = 379

 Score =  341 bits (876), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 146/367 (39%), Positives = 210/367 (57%), Gaps = 12/367 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M AAL  +   +G    NPSV C++V++G V+GRGVT  GG PH E +AL +
Sbjct: 12  FSDQDRAHMRAALTLAARGLGRVWPNPSVGCVLVREGRVVGRGVTGAGGRPHGETEALRQ 71

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE+ARGATAYV+LEPC+H+GR+PPC + ++  G+ RVVV  +DPD RVSG GL  L   
Sbjct: 72  AGEQARGATAYVSLEPCNHHGRTPPCTEALMAAGVARVVVACEDPDPRVSGGGLARLRAA 131

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +   ++E+E +     +  R  E R  +TLK+A S D  I      S  ITG +++ 
Sbjct: 132 GLEVASGLLEAEAQELNAGFFLRIREGRPLVTLKLATSLDGRIATRTGESRWITGPVARA 191

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
             H LRA  DAILVGIGT LADDPELTCRL G+ + SP+RI+LD   +L L S++++TA 
Sbjct: 192 WGHGLRASHDAILVGIGTALADDPELTCRLPGMADRSPVRIVLDSRLRLPLTSRLVRTAD 251

Query: 242 LAPVIIVTENDD--PVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEG 294
             PV ++T  D   P    AF    +++I  +        L + L  L  RG+T +L EG
Sbjct: 252 RTPVWLITRPDAAEPARMAAFADCGVDLIPVEPGPGGEIPLPQALRTLAARGITRVLAEG 311

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDV 350
           GA +A S +   L D +  +R+ +++G   +P+ +  G         +  +     G D+
Sbjct: 312 GARLAASLLRDGLADRLEWFRAGLLLGGDALPAAVGFGADRLADAPRYERIAVRPAGEDL 371

Query: 351 CLEYIGK 357
              Y  +
Sbjct: 372 LESYRRR 378


>gi|171463092|ref|YP_001797205.1| riboflavin biosynthesis protein RibD [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171192630|gb|ACB43591.1| riboflavin biosynthesis protein RibD [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 372

 Score =  341 bits (876), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 125/371 (33%), Positives = 197/371 (53%), Gaps = 17/371 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D +FMS AL  ++  + L++ NP V C+I K+G +IGRG T   G  HAEVQAL +A
Sbjct: 3   SAVDHQFMSEALSEAQKALYLSNPNPRVGCVIAKEGKIIGRGFTQAAGKAHAEVQALADA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G +A G+T YVTLEPCSH G++PPC   +I     +V+V + DP+  V+G+GL+ L 
Sbjct: 63  KARGNDATGSTIYVTLEPCSHTGKTPPCVDALIAAKPSKVIVAMSDPNPLVAGQGLEKLK 122

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI +   +MESE ++    +++R       + +KIA S D    +    S  ITG ++
Sbjct: 123 LAGIEVQYGLMESEAQLLNRGFVSRMTRGLPWVRMKIAASLDGKTALPDGRSQWITGPLA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H  RAQ+ AI+ G+GTV  DDP L  R    +   P+R I+D   +  +++KI+K 
Sbjct: 183 RADGHHWRAQACAIVTGVGTVKEDDPSLNVREVETR-RQPVRTIIDSKLETPINAKILKN 241

Query: 240 ALLAPVIIVTENDDP----VLALAFRKKNINIIYC----DCRDLKKLLTILV-GRGVTSL 290
             L+ ++IV  N D       A AF  + I +I         DL  L + L   R +  +
Sbjct: 242 PELSDILIVCANLDKSEMQAKAKAFEARGIQVIAMANAFGKVDLPCLFSYLAKEREMNEI 301

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG---GIPSPLEEGYLEKNFMCVRRDYFG 347
            +E G  +  S +    +D ++LY +  ++G+G      S L +    +N+  + +   G
Sbjct: 302 HIEAGFKLNDSMLREDCIDELLLYYAPFLMGDGIGMANVSLLNDLGQRQNWQIIDQALLG 361

Query: 348 SDVCLEYIGKN 358
           SD+ L  I  +
Sbjct: 362 SDLRLRLIKNS 372


>gi|168237529|ref|ZP_02662587.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194734520|ref|YP_002113449.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194710022|gb|ACF89243.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197289553|gb|EDY28916.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 367

 Score =  341 bits (876), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 184/368 (50%), Gaps = 20/368 (5%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG 
Sbjct: 2   QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQSGIA 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R   L               P+RI++D   +++  
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292
            +I++        I    +D   A     + I++   +   DL  L+  L  + + S+ V
Sbjct: 242 HRIVQQPGE--TWIARTQEDS-RAWPDSVRTISVPAHNGHLDLVVLMMQLGRQQINSIWV 298

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGS 348
           E G  +A + + + LVD +I+Y +  ++G           LE+      F      + G 
Sbjct: 299 EAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGP 358

Query: 349 DVCLEYIG 356
           DVCL  + 
Sbjct: 359 DVCLHMVS 366


>gi|289432876|ref|YP_003462749.1| riboflavin biosynthesis protein RibD [Dehalococcoides sp. GT]
 gi|288946596|gb|ADC74293.1| riboflavin biosynthesis protein RibD [Dehalococcoides sp. GT]
          Length = 365

 Score =  341 bits (876), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 126/358 (35%), Positives = 182/358 (50%), Gaps = 15/358 (4%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           ++MS AL  ++  +G  S NPSV  +IVK+G V+G+G T   G  HAE+ AL++A E+A+
Sbjct: 2   KYMSQALSLAKLAIGQVSPNPSVGAVIVKNGEVVGQGFTQPPGGDHAEIVALKQAAEKAK 61

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127
           GAT YVTLEPC H GR+PPC   +I  GI+ V +   D +  VSG+G + L   GI V  
Sbjct: 62  GATLYVTLEPCCHQGRTPPCTGSVIASGIKEVYIATLDDNPLVSGKGKKELEAAGIKVHL 121

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            MME E +    AY          +T K A+S D   G     S  I+   S++  H +R
Sbjct: 122 GMMEREARQMNEAYFKHVTTGMPFVTAKYAMSLDGKTGTRTGDSKWISNEESRHFAHYIR 181

Query: 188 AQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
             SD I+ G+ T+L DDP LT R+N    G     P R+I+D + +  L S +       
Sbjct: 182 HISDVIMAGLNTILKDDPHLTARVNCGRGGTSHSQPTRVIIDDNGRAPLSSNVFHVPGN- 240

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVA 299
            ++ V +   P    A+ +    ++         DLK LL  L   GVTS+LVEGG  V 
Sbjct: 241 TIVAVAKGLTPEEKQAYDEVGAKVVELPDERGLVDLKALLRYLGQNGVTSVLVEGGGIVL 300

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCL 352
            S  + +LVD ++++ + I+IG      P+     E       F  +    FG DV +
Sbjct: 301 GSLFDLKLVDKVLVFVAPIIIGGKDAKIPVAGVGAELITDSAKFKDITTTIFGQDVLI 358


>gi|241759512|ref|ZP_04757616.1| riboflavin biosynthesis protein RibD [Neisseria flavescens SK114]
 gi|241320294|gb|EER56627.1| riboflavin biosynthesis protein RibD [Neisseria flavescens SK114]
          Length = 367

 Score =  341 bits (876), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 130/368 (35%), Positives = 196/368 (53%), Gaps = 13/368 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S+ D + M  AL  ++     TS NP V C+I     ++G+G     G PHAEV AL +
Sbjct: 2   FSALDTQMMQTALELAKLGRFSTSPNPRVGCVIAHGAQIVGQGFHVKAGEPHAEVHALRQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  A+GATAYVTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   
Sbjct: 62  AGAAAKGATAYVTLEPCSHYGRTPPCAEALVHSGVTRVVAAMTDPNPLVAGKGLSMLEAA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  +  ++E++ +     +L+R    R  + LK A S D    ++   S  ITG  ++ 
Sbjct: 122 GIRTESGLLEAQARELNRGFLSRIERGRPFVRLKCAASLDGKTALSDGRSFWITGEAARE 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V +LRA+S A+L GIGTVLAD+P+L  R +      P RI+LD   ++ LD  ++ T  
Sbjct: 182 DVQILRAESCAVLTGIGTVLADNPKLNVR-SFPTLRQPARIVLDSRLQIPLDCHLV-TDT 239

Query: 242 LAPVIIVTENDDPVLALAFRK-KNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGG 295
            +P +IVT + D     A R  ++I II          +L  L+  L   G   +LVE G
Sbjct: 240 ESPTVIVTLSSDEQRLQALRTFEHIRIIRPSEHINGRINLLSLMPQLAEFGFGEVLVEAG 299

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVC 351
           + +A +F+   LVD I+LY++  ++G G     L E       +  +     +  G D+ 
Sbjct: 300 STLASAFLKDDLVDEIVLYQAPKLLGAGKPLFSLSENPAVLLSDSPWQSQSVEIIGQDIK 359

Query: 352 LEYIGKNL 359
                K++
Sbjct: 360 WVLRKKSI 367


>gi|304388339|ref|ZP_07370452.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis ATCC
           13091]
 gi|304337656|gb|EFM03812.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis ATCC
           13091]
          Length = 369

 Score =  341 bits (875), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 127/366 (34%), Positives = 184/366 (50%), Gaps = 13/366 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  ALR +      TS NP V C+I     V+G+G     G PHAEV AL +
Sbjct: 2   FSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQVVGQGFHVKAGEPHAEVHALHQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+G   L   
Sbjct: 62  AGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGFAMLEAA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++ 
Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V +LRA+S A+L GIGTVLAD+P L  R        P RI+LD   +L  +S ++ T  
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPNSHLV-TDG 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGG 295
            +P  I T   +      +R+     I           DL  L+ +L   G   ++VE G
Sbjct: 240 QSPTYIATLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAG 299

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVC 351
           + +  +F+   L D I+LYRS  ++G G     L E          +  V  +  G D+ 
Sbjct: 300 SELTSAFLAENLADEIVLYRSPKILGSGKDLFSLLENRAALSAPPLWTPVSSEILGHDIK 359

Query: 352 LEYIGK 357
             +   
Sbjct: 360 TVFRKN 365


>gi|269213784|ref|ZP_05982845.2| riboflavin biosynthesis protein RibD [Neisseria cinerea ATCC 14685]
 gi|269145361|gb|EEZ71779.1| riboflavin biosynthesis protein RibD [Neisseria cinerea ATCC 14685]
          Length = 361

 Score =  341 bits (875), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 123/359 (34%), Positives = 184/359 (51%), Gaps = 11/359 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
            M  AL  +      TS NP V C+I     ++G+G     G PHAEV AL +AGE A+G
Sbjct: 1   MMHQALDLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQAGEMAQG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           ATA+VTLEPCSHYGR+PPCA+ +I+ G+ RVV  + DP+  V+G+GL  L   GI  +  
Sbjct: 61  ATAFVTLEPCSHYGRTPPCAKALIQAGVSRVVAAMRDPNPLVAGKGLALLEAAGIKTECG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++E++ +     +L+R   +R  + LK AVS D    ++   S  IT   ++  V +LRA
Sbjct: 121 LLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITSEEARADVQVLRA 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           +S A+L GIGTVLAD+P+L  R +      P RI+LD   +L   S ++        I  
Sbjct: 181 ESCAVLTGIGTVLADNPQLNVR-DFPTLRQPARIVLDSRLRLPPYSHLVTDGQSPTYIAT 239

Query: 249 TENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            E D+  L       +I I+          DL  L+ +L   G   ++VE G+ +  +F+
Sbjct: 240 LERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTSAFL 299

Query: 304 NSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
              L D I+LYRS  ++G G     +P           +  V  +  G D+   +   +
Sbjct: 300 AEDLADEIVLYRSPKILGSGKDLFSLPENRAALSAPPLWTPVSTEILGHDIKTVFRKND 358


>gi|119356772|ref|YP_911416.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Chlorobium phaeobacteroides DSM 266]
 gi|119354121|gb|ABL64992.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Chlorobium phaeobacteroides DSM 266]
          Length = 366

 Score =  341 bits (875), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 122/357 (34%), Positives = 184/357 (51%), Gaps = 13/357 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG--E 65
             +M+     +    G+ S NP V  +IV +G ++G G     G PHAEV A+   G  E
Sbjct: 7   EWYMNRCFELALQGSGMVSPNPMVGSVIVHNGEIVGEGYHERFGGPHAEVHAIASVGNAE 66

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
             + +T YV LEPCSH+G++PPCA  I+   I RVV+   DP  +V+G+G++ L+  G+ 
Sbjct: 67  VLQNSTLYVNLEPCSHFGKTPPCADLILAKRIPRVVIGCRDPHEKVAGKGIERLTAAGVQ 126

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           + + ++  E      A++         +TLK+A + D  I  AG  S  ITG  S+ QVH
Sbjct: 127 VTEGVLMPEALKLNEAFIKSCTVGLPFVTLKLAQTLDGKIATAGGASRWITGEESRTQVH 186

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR   DA++VG  TV ADD ELT R       +P+R++LD    L  D++I  T     
Sbjct: 187 RLRCNCDAVVVGEATVQADDSELTVR--HCAGRNPLRVLLDRRLSLFADARIFSTEAATL 244

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
           V     +   V A   RK+ + +I  D      DLK++L  L  RG+ SLLVEGG+ ++ 
Sbjct: 245 VFTTRASSCSVKAEQLRKRGVEVIGVDEDATGLDLKRILQELHRRGIISLLVEGGSRLSA 304

Query: 301 SFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           SF+ + LVD ++++ +  + G  G     P  +E              +FG D+ LE
Sbjct: 305 SFLGAALVDKLLVFIAPRLFGGDGLSAFAPLGVELPDQAVQLRFQPPVFFGRDLLLE 361


>gi|26522745|dbj|BAC44849.1| pyrimidine deaminase/pyrimidine reductase [Photobacterium
           phosphoreum]
          Length = 388

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 113/335 (33%), Positives = 177/335 (52%), Gaps = 16/335 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++  D + MS A+  ++     T+ NP+V C+IV DG ++G G     G PHAEV AL +
Sbjct: 1   MTHTDQQMMSRAIALAKHGCYTTAPNPNVGCVIVNDGDIVGEGYHYQAGQPHAEVFALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A + A+GAT YVTLEPCSHYGR+PPCA+ +I   + RVV  + DP+  V+GRG+  L   
Sbjct: 61  AQQRAQGATVYVTLEPCSHYGRTPPCAEALINAKVARVVCAMVDPNPAVAGRGIALLRAA 120

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI VD  ++ S+ +     ++ +   +  ++ LK+A S D    +A   S  ITG  ++ 
Sbjct: 121 GIEVDVGVLASQAQALNPGFIKQMSHQMPYVELKLAASLDGRTALANGVSKWITGPKARA 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V   RAQ+ AIL    TV+ADDP L  R + L+E             P+R+I+D   +L
Sbjct: 181 DVQHFRAQAGAILSTSATVIADDPSLNVRWSELEESVQQAYPQSALRQPIRVIIDSQNRL 240

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVT 288
           + + ++    L    I+              ++       D    DL  L++ L   G+ 
Sbjct: 241 TPEYQLFH--LPGETILARTEIGTEAWPDSVQQWQIPTQTDSHQLDLVVLMSRLANYGIN 298

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            + VE GA +A + +  +LVDS+ILY++  ++G  
Sbjct: 299 HIWVEAGARLAGALLQQQLVDSLILYQAPKLMGSD 333


>gi|146329385|ref|YP_001209386.1| riboflavin biosynthesis protein RibD [Dichelobacter nodosus
           VCS1703A]
 gi|146232855|gb|ABQ13833.1| riboflavin biosynthesis protein RibD [Dichelobacter nodosus
           VCS1703A]
          Length = 368

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 114/352 (32%), Positives = 170/352 (48%), Gaps = 9/352 (2%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D  +M  AL  +R  +   + NP V C+IVK+  +IG G     G  HAE+ AL  AG
Sbjct: 10  DSDLFYMHRALELARNSIFSAAPNPRVGCVIVKNHTIIGEGWHQRAGEAHAEINALNAAG 69

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            +AR AT YVTLEPC+H+GR+PPC   +I  G++RVV+   DP+  V+G+G+  L   GI
Sbjct: 70  TQARDATVYVTLEPCAHFGRTPPCTHALIAAGVKRVVIACSDPNPLVAGKGIAALRAAGI 129

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   +   E       +  R    R  +TLKIA S D    +A   S  ITG +++  V
Sbjct: 130 SVEQGICAQEALQLNRPFFHRMRWGRPWVTLKIAASMDGRTALANGESQWITGELARKDV 189

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           H  R  +DA+L G G+V+ D+  LT R    L  + P+R+++D   K   ++ +      
Sbjct: 190 HFHRLAADAVLAGTGSVIGDNARLTARFPTDLPANPPLRVVIDSQLKTPANAALFCDP-- 247

Query: 243 APVIIVTENDDPV-LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           +P+++VT    P          ++         L  LL  L  R +  L VE G  +A +
Sbjct: 248 SPILMVTTQPPPQSFPQMVEYLSLPATEQGKVPLSALLDELGRRQINHLFVEAGMQLAGA 307

Query: 302 FINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
           F+  +LVD I+LY +   +G+   P     PL        F        G D
Sbjct: 308 FLTEQLVDEILLYLAPTFLGDSARPLVALPPLAHLSDRMRFSIADAHLIGDD 359


>gi|71276434|ref|ZP_00652710.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
           C-terminal [Xylella fastidiosa Dixon]
 gi|170730982|ref|YP_001776415.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase,
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Xylella fastidiosa M12]
 gi|71162750|gb|EAO12476.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
           C-terminal [Xylella fastidiosa Dixon]
 gi|167965775|gb|ACA12785.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase,
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Xylella fastidiosa M12]
          Length = 364

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 122/357 (34%), Positives = 185/357 (51%), Gaps = 9/357 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S+ D   M  AL  +      T  NP V C+IV DG V+G G     G PHAEV AL  
Sbjct: 4   FSADDHCHMERALCLAERGAYTTRPNPMVGCVIVHDGEVVGEGWHQRAGDPHAEVFALRA 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ ARGATAYVTLEPC+H GR+PPCA  +I+ G+RRVV  + DP   V+G G+  L   
Sbjct: 64  AGDCARGATAYVTLEPCAHSGRTPPCAMALIDAGVRRVVAAMVDPFPLVNGGGVTLLRAA 123

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +   +ME++ +     +L+R    R  + +K+  S D    +A   S  ITG  ++ 
Sbjct: 124 GVTVEHGLMEAQARALNRGFLSRVERGRPWVRIKLGSSLDGRTALASGESKWITGEAARA 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKT 239
            V   RA++ AIL G GTVLADDP LT RL G +     P+R++LD   +     K+   
Sbjct: 184 DVQRWRARASAILTGAGTVLADDPALTVRLGGEEGAFLPPLRVVLDSRLRSLSCVKVRD- 242

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
              AP + +         L     +         DL  +L +L  RG+  + VE GA + 
Sbjct: 243 -GTAPTLYLHGFGVTSPVLQHVDFSEVQQRDAGLDLGAVLRLLGERGINEVQVEAGATLC 301

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCVRRDYFGSDVCL 352
            + +++ LVD +++Y + +++G+   P  + L+ G +++      +     G+D+ L
Sbjct: 302 GALLHAGLVDELLIYIAPLLLGDTARPLLAGLDIGRMDQCIGLKVLEVAQVGNDLRL 358


>gi|194097710|ref|YP_002000751.1| Riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae
           NCCP11945]
 gi|240013403|ref|ZP_04720316.1| Riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae DGI18]
 gi|240112192|ref|ZP_04726682.1| Riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae MS11]
 gi|193933000|gb|ACF28824.1| Riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae
           NCCP11945]
          Length = 361

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 124/358 (34%), Positives = 183/358 (51%), Gaps = 11/358 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
            M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +AGE A+G
Sbjct: 1   MMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQAGEMAKG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           ATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   GI  +  
Sbjct: 61  ATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAGIKTECG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++E++ +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  V +LRA
Sbjct: 121 LLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVLRA 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           +S A+L GIGTVLAD+P L  R        P RI+LD   +L  +S ++        I  
Sbjct: 181 ESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPNSHLVTDGQSPTYIAT 239

Query: 249 TENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            E D+  L       +I I+          DL  L+ +L   G   ++VE G+ +  +F+
Sbjct: 240 LERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTSAFL 299

Query: 304 NSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
              L D I+LYRS  ++G G     +P           +  V  +  G D+   +   
Sbjct: 300 AENLADEIVLYRSPKILGGGKDLFSLPENRAALSAPPLWTPVSSEILGHDIKTVFRKN 357


>gi|325928452|ref|ZP_08189643.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas
           perforans 91-118]
 gi|325541169|gb|EGD12720.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas
           perforans 91-118]
          Length = 369

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 121/359 (33%), Positives = 189/359 (52%), Gaps = 8/359 (2%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             S+ D R+M+ ALR +      T  NP V C+IV+DG+ +G G     G PHAEV AL 
Sbjct: 7   TASADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALR 66

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AGE ARGATAYVTLEPC+HYGR+PPCA  +I+ G+ RVV  + DP  +V+G G   L +
Sbjct: 67  AAGELARGATAYVTLEPCAHYGRTPPCALALIDAGVARVVAAMADPFPQVNGGGFALLRE 126

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI ++  +M ++ +     +L+R    R  + +K+  S D    +A   S  ITG  ++
Sbjct: 127 AGIEVLSGVMHAQARTLNQGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITGSRAR 186

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKT 239
                 RA++ AIL G GTV+ADDP +T RL   +    P+R++LD   +  L  + I+ 
Sbjct: 187 ADGQRWRARAGAILTGAGTVMADDPSMTVRLGEDMPVVPPLRVVLDAGLRT-LACRNIRQ 245

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
              AP + +   +    +L   +     +     DL  +L +L  RG+  + VE GA ++
Sbjct: 246 GS-APTLYLHGENVAAPSLDDAQFLAVPLQAGRFDLPAVLALLAERGINEVHVEAGAMLS 304

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
            + + + LVD +++Y + +++G+   P      +E          +     G D+ L Y
Sbjct: 305 GALLQAGLVDELLVYMAPVLLGDTARPLVAGLGIETMAQRHALQLLDVRQLGQDLRLRY 363


>gi|189424808|ref|YP_001951985.1| riboflavin biosynthesis protein RibD [Geobacter lovleyi SZ]
 gi|189421067|gb|ACD95465.1| riboflavin biosynthesis protein RibD [Geobacter lovleyi SZ]
          Length = 367

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 120/367 (32%), Positives = 192/367 (52%), Gaps = 10/367 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S+ D  +M  A+  +R  +G T+ NP+V C+IV DG+++G G     G PHAEV AL  
Sbjct: 1   MSTSDIAYMKRAISLARKGLGRTAPNPAVGCVIVCDGVIVGEGWHKKAGTPHAEVHALAM 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  A+GA  YVTLEPC H+G++PPC   +I  G+RRVV  + DP ++V+G+GLQ L Q 
Sbjct: 61  AGAAAKGADVYVTLEPCCHHGKTPPCCDALIAAGVRRVVAGMVDPFLQVAGKGLQTLRQA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +   ++E + K     ++        ++  K A++ D  I      S  +TG  S+ 
Sbjct: 121 GVRVEVGLLEQQCKELNKGFIKSVTTGMPYLLYKTAMTMDGNIATVTGHSRWVTGEESRR 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH LRA  DA++VG+ TV+AD+P+LT R   ++   P+R+I+D   +      ++    
Sbjct: 181 LVHRLRAHCDAVMVGVDTVIADNPQLTVR--HVRGRDPLRVIVDTRLRTPESVNVLNGTD 238

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297
               +I T   +P +   +  +  +I+ C   D    +  LL  L  RGV S+LVEGG+ 
Sbjct: 239 AGRTVIATCETNPDIHQRYLSQGADILVCREYDGRVEMTDLLRKLAVRGVQSILVEGGSR 298

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF---GSDVCLEY 354
           +A   +   L+D  I + +  V+G G  P  ++        + +        G DV +  
Sbjct: 299 LAGDLLQRNLIDECIFFYAPKVVGNGFAPFAIQGISTMDEAIQLEVQRVGMSGPDVVVYA 358

Query: 355 IGKNLCL 361
               +CL
Sbjct: 359 RPVGVCL 365


>gi|62179027|ref|YP_215444.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62126660|gb|AAX64363.1| pyrimidine deaminase/reductase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322713488|gb|EFZ05059.1| Riboflavin biosynthesis protein ribD [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 367

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 125/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG 
Sbjct: 2   QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+G++PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGQTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
            LRAQS AIL    TVLADDP LT R   L               P+RI++D   +++  
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            +I++       I  T+ D      A R  ++   +    DL  L+  L  + + S+ VE
Sbjct: 242 HRIVQQPGE-TWIARTQEDSRAWPDAVRTISV-PAHNGHLDLVVLMMQLGRQQINSIWVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +A + + + LVD +I+Y +  ++G           LE+      F      + G D
Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPD 359

Query: 350 VCLEYIG 356
           VCL  + 
Sbjct: 360 VCLHMVS 366


>gi|240114937|ref|ZP_04728999.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Neisseria gonorrhoeae PID18]
          Length = 361

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 124/358 (34%), Positives = 187/358 (52%), Gaps = 11/358 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
            M  AL  +      TS NP V C+I     ++G+G     G PHAEV AL +AGE A+G
Sbjct: 1   MMENALDLADLGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQAGEMAKG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           ATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   GI  +  
Sbjct: 61  ATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAGIKTECG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++E++ +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  V +LRA
Sbjct: 121 LLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVLRA 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           +S A+L GIGTVLAD+P L  R        P RI+LD   +L  DS+++       +I  
Sbjct: 181 ESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPDSRLLTDGQSPTLIAT 239

Query: 249 TENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            E ++  L    +  ++ I+          DL +L+ +L G G   ++VE GA +  +F+
Sbjct: 240 LERNEDRLRPYRKHAHVRILMPSETAGGKIDLHRLMRLLAGEGYGEVMVEAGAKLTSAFL 299

Query: 304 NSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
              L D I+LYRS  ++G G     +P           +  V  +  G D+   +   
Sbjct: 300 AENLADEIVLYRSPKILGIGSGLFCLPENRAALSAPPLWTPVSTEILGHDIKTVFRKN 357


>gi|85706317|ref|ZP_01037411.1| riboflavin biosynthesis protein RibD [Roseovarius sp. 217]
 gi|85669090|gb|EAQ23957.1| riboflavin biosynthesis protein RibD [Roseovarius sp. 217]
          Length = 364

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 143/364 (39%), Positives = 197/364 (54%), Gaps = 11/364 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S  DARFM+ AL   R  +G  + NP+V C+IV+   ++GRG TA GG PHAE QAL +
Sbjct: 1   MSGADARFMALALSLGRRGMGQCAPNPAVGCVIVQGRHIVGRGWTAPGGRPHAETQALAQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ ARGATAYV+LEPC+H+G++PPCA  +I  GI RVV   DD D RV+GRG   L   
Sbjct: 61  AGDLARGATAYVSLEPCAHHGKTPPCADALIAAGITRVVAPFDDNDPRVAGRGFARLRAA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++       L  +L R    R  +TLK+A S D  I  A   S  ITG  ++ 
Sbjct: 121 GIEVRTGVLADVAGRDLAGFLMRNEIGRPLVTLKLASSFDGRIATATGHSQWITGPEARR 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH LRA+ DA++VG GT  ADDP LT R  G +   P+R+++     L L S + +TA 
Sbjct: 181 VVHTLRARHDAVMVGAGTARADDPMLTVRDMGAR-RQPVRVVVSRRLDLPLLSNLARTAK 239

Query: 242 LAPVIIVTE-NDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
             P+ +    N DP L  A+R     ++ C+ R    D   +L  L   G+T +  EGG 
Sbjct: 240 DVPLWLCHGPNVDPALVAAWRGIGARLVSCEVRLGQVDPASVLKALGAEGLTRVFCEGGG 299

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
           A+A S +++ LVD +I + +   IG  G+P      L        F  V     G DV  
Sbjct: 300 ALAASLLSAGLVDELIGFTAGFAIGAEGLPGIGALGLARLEEAARFRLVETRSLGGDVMH 359

Query: 353 EYIG 356
            +  
Sbjct: 360 RWTR 363


>gi|262038723|ref|ZP_06012083.1| riboflavin biosynthesis protein RibD [Leptotrichia goodfellowii
           F0264]
 gi|261747275|gb|EEY34754.1| riboflavin biosynthesis protein RibD [Leptotrichia goodfellowii
           F0264]
          Length = 382

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 117/369 (31%), Positives = 196/369 (53%), Gaps = 17/369 (4%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
            +S  DA +M  AL  ++  +G  + NP V  +IVK+G +IG G     G  HAEV A+E
Sbjct: 13  NISKEDAEYMKMALELAKKGIGRVNPNPLVGAVIVKNGKIIGEGYHKMFGEAHAEVHAIE 72

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AGEE + AT YVTLEPCSHYG++PPCA+ II+ GI+R V+   DP+  V+G+G++ L  
Sbjct: 73  NAGEETKNATIYVTLEPCSHYGKTPPCAEKIIKAGIKRCVIGSGDPNPEVAGKGIEMLKN 132

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI + + +++ E       +      K  ++ LK  ++ D  I ++   S  IT   ++
Sbjct: 133 SGIEVTENVLKKECDELNQVFFKYIKSKIPYLFLKCGITLDGKIALSNGESKWITNEKAR 192

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            +V   R +   I+VGI TVL D+P LT R+       P RII+DP+ +++ D  IIK  
Sbjct: 193 EKVQYYRNKFMGIMVGINTVLYDNPSLTARIE--NGVDPFRIIIDPNLRITEDYNIIKNN 250

Query: 241 LLAPVIIVTE----NDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEG 294
                +IVT     N D V     RKK +  I+   ++  ++ +L  +   G+ S+L+EG
Sbjct: 251 SDGKTVIVTSVINKNSDKVEIFKERKK-LKFIFLKGKNFLMRDILEEIGKEGIDSVLLEG 309

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN------FMCVRRDYFGS 348
           G  +     + +++D   ++ S  + G+    S +  G+ + N         ++ + + +
Sbjct: 310 GEKLISKAFSEKVIDGGEIFISNKIFGDKTAKSFIS-GFTKINTDEAITLNNIKYNIYDN 368

Query: 349 DVCLEYIGK 357
           ++ +E+  K
Sbjct: 369 NIGVEFYFK 377


>gi|163742965|ref|ZP_02150348.1| riboflavin biosynthesis protein RibD [Phaeobacter gallaeciensis
           2.10]
 gi|161383648|gb|EDQ08034.1| riboflavin biosynthesis protein RibD [Phaeobacter gallaeciensis
           2.10]
          Length = 372

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 133/362 (36%), Positives = 190/362 (52%), Gaps = 11/362 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             DARFMS AL   R  +G    NP+V C+IV+DG ++GRG T  GG PHAE QAL++AG
Sbjct: 9   PEDARFMSLALSLGRRGLGNCWPNPAVGCVIVRDGRIVGRGWTQPGGRPHAEPQALQQAG 68

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           + ARGAT YV+LEPCSH G++PPCAQ +I  G  RVV  ++D D RVSG G   L   GI
Sbjct: 69  DLARGATVYVSLEPCSHTGKTPPCAQALINAGAARVVAAIEDSDPRVSGHGFAMLRDAGI 128

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   +           +  +  + R  +TLK+A S D  I  A   S  ITG  ++  V
Sbjct: 129 PVTTGVCSDVAAWDHAGFFLKTEQGRPFVTLKLASSFDGRIATAAGESKWITGSEARRAV 188

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H +RA+ DA++VG GT  ADDP LT R  G+    P+R+++  H  L L  ++ ++A   
Sbjct: 189 HAMRARHDAVMVGGGTARADDPSLTVRDLGV-ARQPVRVVISRHLDLPLMGQLARSARDI 247

Query: 244 PVIIVT-ENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAV 298
           PV I      D     A+      ++ C    L+     +L  L   G+T +  EGG+A+
Sbjct: 248 PVWICHGAGADAERLRAWEGLGAVLLPCAADGLQLDAGDVLQQLGQAGLTRVFCEGGSAL 307

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           A S +   LVD +I + + + IG  G+ S     L+       F  +     G+D+   +
Sbjct: 308 AASLLAQDLVDELIGFTAGLGIGGDGLSSIGSLGLDTLAEAPRFDLIDVRPVGADIQHRW 367

Query: 355 IG 356
             
Sbjct: 368 TR 369


>gi|240124968|ref|ZP_04737854.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Neisseria gonorrhoeae SK-92-679]
 gi|268683551|ref|ZP_06150413.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae
           SK-92-679]
 gi|268623835|gb|EEZ56235.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae
           SK-92-679]
          Length = 369

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 125/365 (34%), Positives = 185/365 (50%), Gaps = 11/365 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  +   M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +
Sbjct: 2   FSDTNISMMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   
Sbjct: 62  AGEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  +  ++E++ +     +L+R   +R  + LK AVS D    ++   S  ITG  ++ 
Sbjct: 122 GIKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V +LRA+S A+L GIGTVLAD+P L  R        P RI+LD   +L  +S ++    
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPNSHLVTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGA 296
               I   E D+  L       +I I+          DL  L+ +L   G   ++VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +  +F+   L D I+LYRS  ++G G     +P           +  V  +  G D+  
Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGIGSGLFCLPENRAALSAPPLWTPVSTEILGHDIKT 360

Query: 353 EYIGK 357
            +   
Sbjct: 361 VFRKN 365


>gi|251771354|gb|EES51935.1| riboflavin biosynthesis protein RibD [Leptospirillum
           ferrodiazotrophum]
          Length = 397

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 132/377 (35%), Positives = 189/377 (50%), Gaps = 20/377 (5%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P    D R+M  AL  +       + NP V  ++V+DG V+G G     G  HAEV AL 
Sbjct: 5   PGEPADRRWMQRALVLAEKGRDTVAPNPMVGAVVVRDGKVVGEGYHREAGQEHAEVLALR 64

Query: 62  EAGEEARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            AG+ ARGAT YV LEPC H   R+PPC + I++ G+ RVVV + DP+ RV GRGL+ L+
Sbjct: 65  AAGDRARGATLYVNLEPCCHVEKRTPPCTEAIVQAGVARVVVAMRDPNPRVFGRGLERLA 124

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
            + + + + +  +        + +   + R ++TLK A+S D  I  +   S  I+G  S
Sbjct: 125 GQRLDVSEGLFAARAFEQNRGFSSLIRQGRPYVTLKGAMSLDGKIATSTGDSQWISGSRS 184

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
               H LR   DAILVGI T + DDP LT RL G + H P R+ILD   +L  DS++   
Sbjct: 185 LAYAHRLRRDHDAILVGISTAMKDDPRLTNRLPGSRSHQPARVILDSTGRLPPDSRLFGE 244

Query: 240 ALLAPVIIVTENDDPVLAL-AFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVE 293
               PV +V     P  +L    K    I+          DL+ LL +L   G+ ++LVE
Sbjct: 245 EGGGPVFLVAGPRAPERSLRQLEKSGARILVLPEVRTGEIDLRALLAVLAEEGLLTVLVE 304

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG--------EGGIPSPLEEGYLEKNFMCVRRDY 345
           GG+ V  SF+ + LVD I +  + ++IG         G  P  L        F  +RR  
Sbjct: 305 GGSRVNASFLAAGLVDRIRVVLAPLLIGGTDAIGWLGGASPPTLARARRLPGFSVIRR-- 362

Query: 346 FGSDVCL--EYIGKNLC 360
            G D+ +  ++ G N  
Sbjct: 363 LGDDLLVGADFWGPNSL 379


>gi|326538505|gb|ADZ86720.1| riboflavin biosynthesis protein RibD [Brucella melitensis M5-90]
          Length = 373

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 167/356 (46%), Positives = 228/356 (64%), Gaps = 7/356 (1%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           RFM A +R++R H GLT TNPSV  +IVKDG+++GRGVTA GG PHAE QAL E GE AR
Sbjct: 17  RFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEAAR 76

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GATAYVTLEPC+H+GR+PPCA+ ++  G+ RVVV   DPD RVSG+G   L + GI +V 
Sbjct: 77  GATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEVVP 136

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++  +    L  YL R   KR  + LK+A+S D MIG  G G V ITG +S+ Q H+LR
Sbjct: 137 GILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHILR 196

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           AQ+D IL+GI T LADDP L CRL GL++ SP+R++LD   +L L S+++++A   P+ +
Sbjct: 197 AQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPLWV 256

Query: 248 VTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSF 302
               + P     A       I+  +  D    L +LL  L  +G+ S+LVEGGA VA SF
Sbjct: 257 ACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAKSF 316

Query: 303 INSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           ++ +LVD +I++RS +VIG   G+     E ++   F  +RR  +  D C EY+  
Sbjct: 317 LDEKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYVRN 372


>gi|15677653|ref|NP_274814.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis MC58]
 gi|7227070|gb|AAF42152.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis MC58]
 gi|325139638|gb|EGC62177.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis CU385]
          Length = 369

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 126/366 (34%), Positives = 185/366 (50%), Gaps = 13/366 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +
Sbjct: 2   FSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   
Sbjct: 62  AGEMAQGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++ 
Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V +LRA+S A+L GIGTVLAD+P L  R        P RI+LD   +L  +S ++ T  
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPNSHLV-TDG 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGG 295
            +P  I T   +      +R+     I           DL  L+ +L   G   ++VE G
Sbjct: 240 QSPTYIATLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAG 299

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVC 351
           + +  +F+   L D I+LYRS  ++G G     L E          +  V  +  G ++ 
Sbjct: 300 SELTSAFLAENLADEIVLYRSPKILGSGKDLFSLLENRAALSAPPLWTPVSSEILGHNIK 359

Query: 352 LEYIGK 357
             +   
Sbjct: 360 TVFRKN 365


>gi|325204773|gb|ADZ00227.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
           M01-240355]
          Length = 361

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 126/360 (35%), Positives = 185/360 (51%), Gaps = 13/360 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
            M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +AGE A+G
Sbjct: 1   MMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQAGEMAQG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           ATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   GI  +  
Sbjct: 61  ATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAAGIKTECG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  V +LRA
Sbjct: 121 LLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTTLSDGSSFWITGEDARADVQVLRA 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           +S A+L GIGTVLAD+P L  R        P RI+LD   +L LDS ++ T   +P  I 
Sbjct: 181 ESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPLDSHLL-TDGQSPTYIA 238

Query: 249 TENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           T   +      +R+     I           DL  L+ +L   G   ++VE G+ +  +F
Sbjct: 239 TLERNEDRLHPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAGSELTSAF 298

Query: 303 INSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           +   L D I+LYRS  ++G G     +P           +  V  +  G D+   +   +
Sbjct: 299 LAEDLADEIVLYRSPKILGSGKDLLSLPENRAALSAPPLWTPVSSEILGHDIKTVFRKND 358


>gi|49474161|ref|YP_032203.1| riboflavin biosynthesis protein ribD [Bartonella quintana str.
           Toulouse]
 gi|49239665|emb|CAF26036.1| Riboflavin biosynthesis protein ribD [Bartonella quintana str.
           Toulouse]
          Length = 365

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 148/366 (40%), Positives = 218/366 (59%), Gaps = 13/366 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGI-----VIGRGVTAYGGCPHAEVQALEEAGE 65
           M+AA+R +  H+GLT  NPSV  +I ++       ++G GVTA  G PHAEVQAL  AG 
Sbjct: 1   MAAAIRLAERHIGLTGENPSVGTIIARNDDSRGRCIVGYGVTAIHGRPHAEVQALHMAGP 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            ARGATAYVTLEPCSHYG++ PC   +I  GI RVVV + D D RV GRG+  L   GI 
Sbjct: 61  LARGATAYVTLEPCSHYGKTLPCVNALINSGISRVVVALTDLDKRVDGRGIALLRAAGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V+ ++  E    L  Y   +  +R  +T K+A+S DN +G  G G++ I+G  S    H
Sbjct: 121 VVEGVLAEEAFEALCTYWCIRKLQRCAVTFKMAISADNGVGKKGQGAIKISGMTSHTHTH 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
           +LRAQ++AILVG+GT+L DDP+L+CRL G++  SP+RIILD    + LD+K+++TA   P
Sbjct: 181 ILRAQNNAILVGVGTILVDDPQLSCRLPGMERRSPIRIILDADLCIPLDAKVVQTAKTIP 240

Query: 245 VIIVTEN--DDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAV 298
             ++ +          A  +  +++   +  +       +L +L  RG+ S+L+EGG   
Sbjct: 241 TWVICDVNFSKKSKKSALEQCGVSVYSVEMSNGYMQPLAILRLLYQRGINSVLLEGGVKT 300

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
              F+N+  VD +I + + +++G+  I +P    YL + F  V    FG+D C ++  K 
Sbjct: 301 GEKFLNAGCVDHLICFYAPVILGKDRIEAPHFGNYLSQ-FYEVETRMFGNDRCYKWRRKT 359

Query: 359 LCLQEL 364
           LC QEL
Sbjct: 360 LCSQEL 365


>gi|262166346|ref|ZP_06034083.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio mimicus VM223]
 gi|262026062|gb|EEY44730.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio mimicus VM223]
          Length = 367

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 126/376 (33%), Positives = 190/376 (50%), Gaps = 29/376 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +AGE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+GRG+Q L
Sbjct: 61  MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGRGVQML 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++E++ +     +L R      ++ LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVQIGLLEADARALNSGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R + L +             P+R+ILD  
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPQSVQTQYAETDLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRG 286
            +L  +  + +T   +PV+ V   +  +   A   K          DL++LL  L     
Sbjct: 241 HQLHPELSLYQTP--SPVLRVASENADLCISAENGK---------LDLRELLAQLAQQHN 289

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVR 342
           V  + VE G+ +A S I  +LVD IILY +  ++G  G       G  E           
Sbjct: 290 VNQVWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIED 349

Query: 343 RDYFGSDVCLEYIGKN 358
               G+D+ +    K+
Sbjct: 350 CRMVGADLRVIATPKS 365


>gi|156973476|ref|YP_001444383.1| pyrimidine deaminase [Vibrio harveyi ATCC BAA-1116]
 gi|156525070|gb|ABU70156.1| hypothetical protein VIBHAR_01166 [Vibrio harveyi ATCC BAA-1116]
          Length = 374

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 121/367 (32%), Positives = 179/367 (48%), Gaps = 28/367 (7%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            +S D   MS AL+ ++  +  T+ NP+V C+IV+DG ++G G     G PHAEV A+  
Sbjct: 10  FTSQDFEMMSRALKLAKRGIYTTAPNPNVGCVIVRDGEIVGEGHHHRAGEPHAEVHAMRM 69

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG++ +GATAYVTLEPCSHYGR+PPCA+ +I+  + RVV  ++DP+ +V+GRG Q L   
Sbjct: 70  AGDKTQGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMEDPNPKVAGRGFQMLRDA 129

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +   ++ESE       ++        +I LK+A S D    ++   S  IT   ++ 
Sbjct: 130 GVEVQVGLLESEAIELNKGFIKFMQTGMPYIQLKMAASLDGQSALSNGQSQWITSPKARQ 189

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V   RA S  IL    TV+ D+  L  R   L +             P R+I D   +L
Sbjct: 190 DVQRYRALSCGILSTSKTVIDDNASLNVRWEDLPKSVQTQYPQEDVRQPPRVIFDRQSQL 249

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTS 289
           S D K+  T      IIV++  D V  L    +          DL   L  +  G  +  
Sbjct: 250 SDDLKLFNTDGER--IIVSQGSDMVPELGENGQ---------IDLAATLRNVASGYHINH 298

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDY 345
           L VE GA +A S I + LVD +I+Y +  ++G  G        L E     +        
Sbjct: 299 LWVEAGATLASSLIKANLVDELIVYLAPKLMGSDGRGLIGALGLTEMAQVIDLTITDVRM 358

Query: 346 FGSDVCL 352
            G D+ +
Sbjct: 359 VGVDIRI 365


>gi|153009855|ref|YP_001371070.1| riboflavin biosynthesis protein RibD [Ochrobactrum anthropi ATCC
           49188]
 gi|151561743|gb|ABS15241.1| riboflavin biosynthesis protein RibD [Ochrobactrum anthropi ATCC
           49188]
          Length = 373

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 166/363 (45%), Positives = 232/363 (63%), Gaps = 7/363 (1%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             ++ D RFM A +R++R H GLT TNPSV  +IVKDG+++GRGVTA GG PHAE QAL 
Sbjct: 10  NATADDVRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTAIGGRPHAEPQALA 69

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +AGE ARGATAYVTLEPC+H+GR+PPCA+ ++  G+ RVVV   DPD RVSGRG   L +
Sbjct: 70  DAGEVARGATAYVTLEPCAHHGRTPPCAEALVRAGVARVVVAATDPDERVSGRGFAILRE 129

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +V  ++  +    L  YL R  +KR  + LK+A+S D MIG  G G + ITG +++
Sbjct: 130 AGIEVVPGILAEQAADDLAGYLNRSAKKRPEVILKLALSADGMIGRRGEGQLAITGPVAR 189

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            Q H+LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD   +L L SK+++TA
Sbjct: 190 AQSHILRAQTDIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDSGLRLPLSSKLVQTA 249

Query: 241 LLAPVIIVTENDD-PVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGG 295
              P+ I    +  P      +     I+  +  D    L +L+  L  +G++S+LVEGG
Sbjct: 250 DAQPLWIACGEEALPERRYELQAAGCRILATEAYDCRIALPELMDDLAAQGISSVLVEGG 309

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           A VA SF++  LVD + ++RS + IG   G+     E ++   F  +R+  +G D   EY
Sbjct: 310 AGVAKSFLDEGLVDRLAIFRSPVEIGSELGVAVDGLETHIADKFKILRQARYGDDAYTEY 369

Query: 355 IGK 357
           + K
Sbjct: 370 VRK 372


>gi|289663675|ref|ZP_06485256.1| riboflavin biosynthesis protein RibD [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 369

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 121/357 (33%), Positives = 183/357 (51%), Gaps = 8/357 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D R+M+ ALR +      T  NP V C+IV+DG+ +G G     G PHAEV AL  A
Sbjct: 9   SADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRAA 68

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPC+HYGR+PPCA  +I+ G+ RVV  + DP  +V+G G   L   G
Sbjct: 69  GELARGATAYVTLEPCAHYGRTPPCALALIDAGVTRVVAAMADPFPQVNGGGFALLRDAG 128

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I ++  +M ++ +     +L+R       + +K+  S D    +A   S  ITG  ++  
Sbjct: 129 IEVLSGVMHAQARTLNRGFLSRVERGWPWVRIKLGASLDGRTALASGQSKWITGADARAD 188

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-SPMRIILDPHFKLSLDSKIIKTAL 241
           V   RA++ AIL G GTVLAD+P +T RL        P+R++LD   +    + I     
Sbjct: 189 VQRWRARACAILTGAGTVLADNPSMTVRLGDDTAFAPPLRVVLDSGLRTLACANIRDGD- 247

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            AP + +  +     AL   +     +     DL  +L +L  RG+  + VE GA ++ +
Sbjct: 248 -APTLYLHGDAVAATALNGAEFAALPLSAGRFDLAAVLALLAKRGINEVHVEAGATLSGA 306

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLEY 354
            + + LVD +++Y + +++G+   P     G                  G D+ L Y
Sbjct: 307 LLQAGLVDELLIYMAPVLLGDTARPLLAGLGIETLAQRYELQLHDVRQLGQDLRLRY 363


>gi|258620986|ref|ZP_05716020.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
           mimicus VM573]
 gi|258586374|gb|EEW11089.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
           mimicus VM573]
          Length = 367

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 126/376 (33%), Positives = 190/376 (50%), Gaps = 29/376 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +AGE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+GRG+Q L
Sbjct: 61  MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGRGVQML 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++E++ +     +L R      ++ LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVQIGLLEADARALNSGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R + L +             P+R+ILD  
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPQSVQTQYAETDLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRG 286
            +L  +  + +T   +PV+ V   +  +   A   K          DL++LL  L     
Sbjct: 241 HQLHPELALYQTP--SPVLRVASENADLCISAENGK---------LDLRELLAQLAQQHN 289

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVR 342
           V  + VE G+ +A S I  +LVD IILY +  ++G  G       G  E           
Sbjct: 290 VNQVWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIED 349

Query: 343 RDYFGSDVCLEYIGKN 358
               G+D+ +    K+
Sbjct: 350 CRMVGADLRIIATPKS 365


>gi|16331497|ref|NP_442225.1| riboflavin biosynthesis protein [Synechocystis sp. PCC 6803]
 gi|2833460|sp|Q55158|RIBD_SYNY3 RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
           RecName:
           Full=Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase; Includes: RecName:
           Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|1001153|dbj|BAA10295.1| riboflavin biosynthesis protein [Synechocystis sp. PCC 6803]
          Length = 368

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 102/349 (29%), Positives = 170/349 (48%), Gaps = 8/349 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D   M   L  ++  +G T+ NP V  +IV+   ++G+G     G PH E+ AL EAG+ 
Sbjct: 4   DQTHMRRCLTLAKTAIGKTAPNPLVGSVIVQGDEIVGQGFHPQAGQPHGEIFALWEAGDR 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YV LEPC+H GR+PPC + II+ GI +VVV + DP+  V+G+G+  L Q GI +
Sbjct: 64  AKGATLYVNLEPCNHQGRTPPCTEAIIQAGIAKVVVGMVDPNPLVAGKGISRLRQAGIEV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              + E   +    A+  R   +R     K A++ D  I  A   S  +T   +++ VH 
Sbjct: 124 KVGVEEEACQRLNEAFCFRIKHQRPFGIFKYAMTLDGKIATAQAHSSWVTSSSARHWVHQ 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR+Q  A+++G  TV  D+P LT    G+ E +P+R++L     L +++++    +   +
Sbjct: 184 LRSQCQAVIIGGNTVRRDNPLLTNH--GVGEVNPLRVVLSRSLDLPIEAQLWDQDVAKTL 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           +I  +  D        K  +  +  +      ++  L  R    +L E G  +A   I  
Sbjct: 242 VITEKTCDRNTLSHLEKLEVETLVLEQLTPLAVMEELYQRNCLQVLWECGGILAAEAIAM 301

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSD 349
             V  +  + +  +IG    P+P+ E   ++     N   +     G D
Sbjct: 302 GTVQKVHAFLAPKIIGGVAAPTPVGELGFQQMTQALNLTDLHCQAIGPD 350


>gi|289671055|ref|ZP_06492130.1| riboflavin biosynthesis protein RibD [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 369

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 121/357 (33%), Positives = 183/357 (51%), Gaps = 8/357 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D R+M+ ALR +      T  NP V C+IV+DG+ +G G     G PHAEV AL  A
Sbjct: 9   SADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRAA 68

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPC+HYGR+PPCA  +I+ G+ RVV  + DP  +V+G G   L   G
Sbjct: 69  GELARGATAYVTLEPCAHYGRTPPCALALIDAGVTRVVAAMADPFPQVNGGGFALLRDAG 128

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I ++  +M ++ +     +L+R       + +K+  S D    +A   S  ITG  ++  
Sbjct: 129 IEVLSGVMHAQARTLNRGFLSRVERGWPWVRIKLGASLDGRTALASGQSKWITGADARAD 188

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-SPMRIILDPHFKLSLDSKIIKTAL 241
           V   RA++ AIL G GTVLAD+P +T RL        P+R++LD   +    + I     
Sbjct: 189 VQRWRARACAILTGAGTVLADNPSMTVRLGDDTAFAPPLRVVLDSGLRTLACANIRDGD- 247

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            AP + +  +     AL   +     +     DL  +L +L  RG+  + VE GA ++ +
Sbjct: 248 -APTLYLHGDAIAATALNGAEFAALPLSAGRFDLAAVLALLAKRGINEVHVEAGATLSGA 306

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLEY 354
            + + LVD +++Y + +++G+   P     G                  G D+ L Y
Sbjct: 307 LLQAGLVDELLIYMAPVLLGDTARPLLAGLGIETLAQRYELQLHDVRQLGQDLRLRY 363


>gi|301381786|ref|ZP_07230204.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           tomato Max13]
 gi|302061014|ref|ZP_07252555.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           tomato K40]
 gi|302130534|ref|ZP_07256524.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           tomato NCPPB 1108]
          Length = 378

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 127/364 (34%), Positives = 185/364 (50%), Gaps = 20/364 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            ++ D  +M+ AL  +R  +  T  NP V C+IV+DG ++G+G  A  G PHAEV AL E
Sbjct: 5   QAALDVHYMAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALRE 64

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH GR+PPCA  +I  G+ RVV  + DP+ +V+G GL  L   
Sbjct: 65  AGELARGATAYVTLEPCSHQGRTPPCADALISAGLARVVAAMQDPNPQVAGSGLLRLMTA 124

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++ESE +     ++ R    R ++ +K+A+S D    MA   S  ITG  +++
Sbjct: 125 GISVQCGVLESEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARS 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRAQS  +L G  TVLAD   LT R + L              P+R+++D   ++ 
Sbjct: 185 AVQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVP 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVT 288
           LD+   +       ++VT              +  +   D     DL++L+  L  RGV 
Sbjct: 245 LDTPFFQAGSA---LVVTCAAASARGRYQEDGHEMLALADSAGHVDLRRLMGELGARGVN 301

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345
            +LVE G  +A +F    LVD   L+ +   +G    P    PL +         +    
Sbjct: 302 EVLVEAGPRLAGAFTRLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIIEMRA 361

Query: 346 FGSD 349
            G+D
Sbjct: 362 VGND 365


>gi|269103255|ref|ZP_06155952.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163153|gb|EEZ41649.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 378

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 189/368 (51%), Gaps = 20/368 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S+FD + MS A+  ++     T+ NP+V C+IV +G ++G G     G PHAEV AL  
Sbjct: 2   FSAFDHKMMSRAIALAKKGRFTTAPNPNVGCVIVNNGQIVGEGFHYRAGLPHAEVFALRA 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG++ARGATAYVTLEPCSHYGR+PPCA  +IE GI RVV  + DP+ +V+G G+  L   
Sbjct: 62  AGDKARGATAYVTLEPCSHYGRTPPCALALIEAGISRVVCAMVDPNPKVAGNGVTLLQNA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +   ++E + K     ++        ++ LK+A S D    +A   S  ITG  ++ 
Sbjct: 122 GVTVEVGLLEQDAKALNLGFIKAMQTGMPYVQLKMASSLDGRTALANGESKWITGPQARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKL 230
            V   RAQ+ AIL    TV+ADDP +  R   L           +   P+R+I+D   +L
Sbjct: 182 DVQHFRAQAGAILSTSATVIADDPSMNIRWQELPFYIQQQYPKSELRLPIRVIIDSQNRL 241

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI-NIIYCDCRDLKKLLTILVGRGVTS 289
           S D ++        ++   E  D V   +  +  I         DL +LL  LV  G+  
Sbjct: 242 SPDYQLFHLPGK-TLLARCEQGDEVWPDSVTQLIISRTPDSSQLDLHELLQQLVKLGIYH 300

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRD 344
           + VE GA +A + + ++LVDS ILY++  ++G        +P     G +  N       
Sbjct: 301 IWVEAGAGLAGALVQNQLVDSFILYQAPKLMGAEARGVMNLPQLTAMGQVP-NVSISDLR 359

Query: 345 YFGSDVCL 352
             G+D+ +
Sbjct: 360 MVGTDIRI 367


>gi|317163508|gb|ADV07049.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 361

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 124/358 (34%), Positives = 183/358 (51%), Gaps = 11/358 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
            M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +AGE A+G
Sbjct: 1   MMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALHQAGEMAKG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           ATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   GI  +  
Sbjct: 61  ATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAGIKTECG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++E++ +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  V +LRA
Sbjct: 121 LLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVLRA 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           +S A+L GIGTVLAD+P L  R        P RI+LD   +L  +S ++        I  
Sbjct: 181 ESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPNSHLVTDGQSPTYIAT 239

Query: 249 TENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            E D+  L       +I I+          DL  L+ +L   G   ++VE G+ +  +F+
Sbjct: 240 LERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTSAFL 299

Query: 304 NSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
              L D I+LYRS  ++G G     +P           +  V  +  G D+   +   
Sbjct: 300 AENLADEIVLYRSPKILGGGKDLFSLPENRAALSAPPLWTPVSTEILGHDIKTVFRKN 357


>gi|152980375|ref|YP_001354124.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Janthinobacterium sp. Marseille]
 gi|151280452|gb|ABR88862.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Janthinobacterium sp. Marseille]
          Length = 363

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 121/358 (33%), Positives = 182/358 (50%), Gaps = 17/358 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D + +  AL  +   +  T+ NP V C+IVK+  VIG G T   G  HAEVQAL +A   
Sbjct: 6   DVQGIRLALELAAKGMFTTTPNPRVGCVIVKENKVIGSGYTQPVGHAHAEVQALNDAADR 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G +  G+T YVTLEPCSH+GR+PPCA  +I+  + RVV  + DP+  V+G+GL  L   G
Sbjct: 66  GFDVSGSTVYVTLEPCSHHGRTPPCADALIKARVARVVAAIADPNPLVAGQGLARLEAAG 125

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +   ++E+E +     +L+R    +  + +K A S D M  +    S  ITG  ++  
Sbjct: 126 IQVSCGVLEAEAREMNIGFLSRMQHGKPWVRMKSAASLDGMTALHNGISQWITGDEARAD 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H  RA++ AIL GIGTV+ DDP+LT R        P RI++D H ++S  ++++     
Sbjct: 186 GHYWRARACAILTGIGTVMEDDPQLTVRAID-TPRQPQRIVIDSHLQISPHARVLSGGG- 243

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAV 298
              +IV    +P      R     II         DL  L+  L  R +  L VE G  +
Sbjct: 244 --TLIVAAQANPEKEKPLRDLGHEIIVLPNAGGKVDLAALMQELGRRQINELHVEAGFKL 301

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
             S I    VD +++Y +  ++G+      +P PLE    +KN         G+D+ +
Sbjct: 302 NGSLIREGCVDELLVYLAPTLLGDAQRMFNLP-PLESLEHKKNLTFHEVKQIGADLRI 358


>gi|310779807|ref|YP_003968139.1| riboflavin biosynthesis protein RibD [Ilyobacter polytropus DSM
           2926]
 gi|309749130|gb|ADO83791.1| riboflavin biosynthesis protein RibD [Ilyobacter polytropus DSM
           2926]
          Length = 359

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 109/361 (30%), Positives = 182/361 (50%), Gaps = 11/361 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D ++M  AL+ +    G  + NP V  ++VK+G ++G G     G PHAEV AL EAG 
Sbjct: 1   MDKKYMETALKLALKGEGNVNPNPMVGAVVVKNGTIVGEGYHKQYGGPHAEVYALNEAGS 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           E RGAT YVTLEPCSHYG++PPCA+ IIE GI++ V+   DP+  V+GRG++ L + GI 
Sbjct: 61  ECRGATIYVTLEPCSHYGKTPPCAEKIIEMGIKKCVIACLDPNPLVAGRGVKILERAGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +ME E       ++     ++  + LK A++ D  I      S  IT  +S+ +V 
Sbjct: 121 VEVGLMEKEALELNRVFMKYITTEKPFVFLKCAITLDGKIAARTGSSKWITNEVSREKVQ 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR +   I+VG  T++ D+P L  R+ G   + P RI++DP   +  DS          
Sbjct: 181 RLRHRFMGIMVGANTLVMDNPRLNARIEG--GNDPFRIVIDPELIVPSDSNFASMKDGKS 238

Query: 245 VIIVTE-NDDPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHS 301
           +I+ +E N D         + +   +    + K   +L  +    + S+L+EGG+ +   
Sbjct: 239 IIVTSEKNKDSEKVSLLEARGVRFAWLPGDEFKISDILKKVGELKIDSVLLEGGSYLISK 298

Query: 302 FINSRLVDSIILYRSQIVIGE-GGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
                 +D   ++ +  ++G+  GIP       +          V+ + +G+++ +E+  
Sbjct: 299 AFEENAIDGGEIFIAPKILGDQKGIPFIKGFSFDSIEEAFELKNVKFNQYGNNISVEFYK 358

Query: 357 K 357
            
Sbjct: 359 D 359


>gi|186475387|ref|YP_001856857.1| riboflavin biosynthesis protein RibD [Burkholderia phymatum STM815]
 gi|184191846|gb|ACC69811.1| riboflavin biosynthesis protein RibD [Burkholderia phymatum STM815]
          Length = 373

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 186/368 (50%), Gaps = 25/368 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +   +  T  NP V C++VK+G VIG G T   G  HAE+QAL++
Sbjct: 2   FSQTDFVHMERALALAWRGLYTTDPNPRVGCVLVKNGEVIGEGFTQPAGRDHAEIQALKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + +GATAYVTLEPCSH+GR+PPCA  +IE  + RVV  ++DP+ RVSGRGL  L
Sbjct: 62  ARKRGHDLQGATAYVTLEPCSHFGRTPPCANALIEAKLARVVAAMEDPNPRVSGRGLSML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            + GI +   ++E++ +     +++R    R  + +K+A S D   G+    S  IT   
Sbjct: 122 REAGIEVRCGLLENDARELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGESQWITSEA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++N  H  RA++ AIL GIGTV  D+P +T R        P R+++D   ++  D++I+ 
Sbjct: 182 ARNDGHAWRARASAILTGIGTVKEDNPRMTVRAVD-TPRQPHRVLIDSQLEVPPDAQIL- 239

Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291
               AP ++      P     A     +   I+         DL ++L  L  R V  L 
Sbjct: 240 --AGAPTLVFCSTLSPLLTERAAVLHDRGAEIVPLANENGKVDLPRMLEELGKREVNELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344
           VE G  +  S +    VD +++Y +  ++G           P  L +   +  F  V  D
Sbjct: 298 VEAGYKLNGSLLREGCVDELLVYVAPSLLGNDSMSMFNLAAPGSL-DARTQLEFHAV--D 354

Query: 345 YFGSDVCL 352
             GSDV +
Sbjct: 355 RIGSDVRI 362


>gi|78485744|ref|YP_391669.1| riboflavin biosynthesis protein RibD [Thiomicrospira crunogena
           XCL-2]
 gi|78364030|gb|ABB41995.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Thiomicrospira crunogena XCL-2]
          Length = 391

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 130/378 (34%), Positives = 201/378 (53%), Gaps = 25/378 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S FD + M  A+  +R  +  T  NP+V C+I +   +I  G     G PHAE  AL  
Sbjct: 9   FSDFDVQMMQRAIDLARKGLYSTKPNPAVGCVITQQENIIAEGWHQKAGEPHAERVALAN 68

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A E  +GAT YVTLEPCSH+G++PPCA  +++ G+ RVV+ + DP+  V+G G++ L Q 
Sbjct: 69  ATESVKGATVYVTLEPCSHHGKTPPCADALVDSGVARVVIAMQDPNPLVAGNGIKRLEQA 128

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI+VD  ++  E       +++     R  + LK+A S D    MA   S  ITG  +++
Sbjct: 129 GIVVDSGILSEEAAALNKGFVSVMTSNRPFVRLKVANSLDGRTAMANGESQWITGPEARH 188

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN-------GLQEHS--PMRIILDPHFKLSL 232
           QVHL+RAQ  AI+ G+GTVLADDP L  RL+       GL   +  P+R++LD +    L
Sbjct: 189 QVHLMRAQHGAIVTGVGTVLADDPSLNVRLSESVLTELGLTSENCHPLRVVLDANLSTPL 248

Query: 233 DSKIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYC----DCRDLKKLLTILVG 284
           D+K++  +L    +++T  +    +  L   F +K   +I      D  D+  +L+ LV 
Sbjct: 249 DAKML--SLPGRTLLMTSKETVDQNLDLIERFYQKGAEVIAVESDGDKLDIPSVLSYLVE 306

Query: 285 -RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFM 339
              +  ++VE GA VA +FI + +V+ + ++ + I++GE   P  +  G  E    K F 
Sbjct: 307 SENIYDVMVEAGAIVAGAFIQADVVNELHVFTAPILMGEMAKPMFVLPGLTEMADKKVFA 366

Query: 340 CVRRDYFGSDVCLEYIGK 357
                  G D+ L    K
Sbjct: 367 YQSVQALGEDLYLVLTPK 384


>gi|6572106|emb|CAB63090.1| riboflavin-specific deaminase / reductase [Bartonella henselae str.
           Houston-1]
          Length = 363

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 147/364 (40%), Positives = 222/364 (60%), Gaps = 13/364 (3%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIVKDGI-----VIGRGVTAYGGCPHAEVQALEEAGEEA 67
           AA+R +  HVGLT  NPSV  +I ++       ++G GVTA  G PHAEVQAL+ AG  A
Sbjct: 1   AAIRLAERHVGLTGENPSVGTIIARNDENVGVYIVGYGVTAIQGRPHAEVQALQMAGSLA 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
            GATAYVTLEPCSHYG++ PC   +++ GI RVV+ + D D RV+GRG+  L   GI ++
Sbjct: 61  HGATAYVTLEPCSHYGKTSPCVNTLLKSGISRVVIALTDLDKRVNGRGIALLRAAGIEVI 120

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
           + ++  E    L  Y   + ++R  +TLK+A+S DN +G  G G + I+G  S  Q H+L
Sbjct: 121 EGVLAKEAFESLCNYWCIRKQQRCAVTLKMAISADNGVGKKGQGGIKISGTTSHAQTHIL 180

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RAQ++AILVGIGT+LADDP+L CRL G++ HSP+RIILD +  + L++K+++TA + P  
Sbjct: 181 RAQNNAILVGIGTILADDPQLNCRLPGMEMHSPIRIILDANLCIPLNAKVVQTAKIIPTW 240

Query: 247 IVTEN--DDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
           ++ +         +A  +  +++   +  +       +L +L  RG+ S+L+EGG     
Sbjct: 241 VICDVNFSKKSKKIALEQYGVSVYSVEVSNGYMPPLTILQLLYQRGINSVLLEGGVKTGE 300

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
            F+N+  VD +I + + +++G+  I +P    YL + F  V    FG D   ++  K LC
Sbjct: 301 IFLNAGCVDHLICFYAPVILGKDRIKAPHFGNYLSQ-FHEVETRMFGKDRFYKWRRKTLC 359

Query: 361 LQEL 364
            QEL
Sbjct: 360 SQEL 363


>gi|295677354|ref|YP_003605878.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1002]
 gi|295437197|gb|ADG16367.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1002]
          Length = 383

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 126/367 (34%), Positives = 194/367 (52%), Gaps = 23/367 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  ++  +  T  NP V C++V++G VIG G T   G  HAE++AL++
Sbjct: 2   FSQTDFVHMERALALAKRGMYTTDPNPRVGCVLVRNGEVIGEGYTQPAGQDHAEIRALKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + RGATAYVTLEPCSH+GR+PPCA  +IE  I RV+  ++DP+ +VSGRGL  L
Sbjct: 62  ARSRGHDLRGATAYVTLEPCSHFGRTPPCANALIEAQIGRVIAAMEDPNPQVSGRGLAML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            + GI +   ++ +E +     +++R    R  + +K+A S D   G+    S  IT   
Sbjct: 122 REAGIEVRCGLLANEARELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGESQWITSAA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H  RA++ AIL GIGTV  D+P +T R        P R+++D    + LD++I+ 
Sbjct: 182 ARADGHAWRARASAILTGIGTVREDNPRMTVRAVD-TPRQPHRVLIDSQLDVPLDAQIL- 239

Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLL 291
               AP +I     D      A+A R++   I+         DL ++L++L  R V  L 
Sbjct: 240 --AGAPTLIFCGELDARLEERAVALRERGAEIVPLPNAFGKVDLPRMLSVLGERNVNELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-----GIPSP-LEEGYLEKNFMCVRRDY 345
           VE G  +  S +    VD +++Y +  ++G        + SP L E  ++ NF  V R  
Sbjct: 298 VEAGYKLNGSLLREGCVDELLVYLAPSLLGMDSMSMFNLDSPDLLEDRVKLNFHMVER-- 355

Query: 346 FGSDVCL 352
            G D+ +
Sbjct: 356 IGDDLRI 362


>gi|209548782|ref|YP_002280699.1| riboflavin biosynthesis protein RibD [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534538|gb|ACI54473.1| riboflavin biosynthesis protein RibD [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 404

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 186/402 (46%), Positives = 240/402 (59%), Gaps = 46/402 (11%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M V+  D  FM+AA+R SR H+G T+TNPSV CLIV+DG+V+G+ VTA GG PHAE QAL
Sbjct: 1   MSVTPHDESFMAAAIRLSRRHLGRTATNPSVGCLIVRDGVVVGQAVTAVGGRPHAEPQAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAG  ARGATAYVTLEPCSH+G++PPCA+ +I  G+ RVV+ V DPD RVSGRG+  L 
Sbjct: 61  AEAGAAARGATAYVTLEPCSHHGKTPPCAEALIAYGVARVVISVTDPDPRVSGRGIAMLR 120

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI VD  ++E++G+  L  YLTRQ + R ++TLK+AVS D MIG  G G V ITG  +
Sbjct: 121 EAGIEVDAGVLEADGRRSLAGYLTRQTKNRPYVTLKLAVSADGMIGREGAGQVAITGPEA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           + +V  LRA++DAILVGIGT ++DDP LT R  GL+  SP+RI+LDP   L L SK+++T
Sbjct: 181 RAEVQALRAETDAILVGIGTAISDDPLLTVRTPGLEAQSPIRIVLDPSLALPLTSKLVQT 240

Query: 240 ALLAPVIIVTEN---------------------------------------------DDP 254
           A   PVI+V                                                D  
Sbjct: 241 ARDVPVIVVASEEISPSGSEEGLSPSALGANPQPISPLVGEMSGRTEGGATLPAAAMDLD 300

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
               A     + I+YC+    + LL  L  RG++SLLVEGGA  A  F+ + LVD I LY
Sbjct: 301 SRRTALEAAGVEIVYCNPYHPEILLPALATRGISSLLVEGGAKTARLFLEAGLVDRIQLY 360

Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
           ++ +VIGEGGI SPL+   +   F       FG D   EY  
Sbjct: 361 QAPVVIGEGGIESPLDATDIPPGFAQTGTQMFGEDRLDEYER 402


>gi|78188601|ref|YP_378939.1| riboflavin biosynthesis protein RibD [Chlorobium chlorochromatii
           CaD3]
 gi|78170800|gb|ABB27896.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Chlorobium chlorochromatii CaD3]
          Length = 366

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 117/366 (31%), Positives = 183/366 (50%), Gaps = 18/366 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           MP       +M  AL  +    G  S NP V  L+V++G +IG G     G  HAEV A+
Sbjct: 1   MPALEH-TFYMQRALELALRGAGRVSPNPMVGALLVQEGEIIGEGWHERYGEAHAEVNAI 59

Query: 61  EEAGEEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                EA  R AT YVTLEPCSH+G++PPC+  II   I RVVV   DP   V+GRG+  
Sbjct: 60  AAVTNEAWLREATLYVTLEPCSHFGKTPPCSDLIIAKQIPRVVVGCRDPFPAVAGRGIAK 119

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L   GI +++ ++E+E      A++         +TLK+A + D  +      S  ITG 
Sbjct: 120 LRAAGIEVIEGVLEAECLQSNEAFIKSHTVGLPFVTLKLAQTLDGKLATVTGASRWITGE 179

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            ++ +VH LR+  DA+LVG  T LAD+ +LT R       +P+R++LD   +L L+S I 
Sbjct: 180 EARAEVHRLRSVYDAVLVGGATALADNSQLTVR--QANGRNPLRVVLDRSLQLPLESLIF 237

Query: 238 KTALLAPVIIVT--ENDDPVLALAFRKKNINIIY----CDCRDLKKLLTILVGRGVTSLL 291
                AP ++ T           A +K  +++       +   L+++L  L  R + S+L
Sbjct: 238 N--HEAPTLLFTSLSQQHSPKVEALQKLGVSVHAVSESAEGLQLREVLEELHHRHILSVL 295

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR----DYFG 347
           VE G+ +  + + +  VD ++++ +  + G  G+ +    G    +     R     +FG
Sbjct: 296 VESGSRLGAALLQAGFVDKLLIFIAPKLFGGDGLSAFAPLGVTVPDEAIALRFELPRFFG 355

Query: 348 SDVCLE 353
            D+ LE
Sbjct: 356 KDLLLE 361


>gi|220934731|ref|YP_002513630.1| riboflavin biosynthesis protein RibD [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219996041|gb|ACL72643.1| riboflavin biosynthesis protein RibD [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 369

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 118/333 (35%), Positives = 182/333 (54%), Gaps = 13/333 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           +  D R M+ AL+ +R  +  T  NP V C++V+DG V+G G     G PHAE+ AL +A
Sbjct: 3   TETDTRHMARALQLARRGLYTTDPNPRVGCVMVRDGQVLGEGFHVRAGEPHAEILALRQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGAT YVTLEPC+H+GR+PPCA  +I  G+ RVV  + DP+ RV+G+GL  L+  G
Sbjct: 63  GEAARGATVYVTLEPCAHFGRTPPCADALIHAGVARVVAAMVDPNPRVAGQGLARLTAAG 122

Query: 124 IIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I     ++E+E +     +++R  + R ++ +K+A+S D    MA   S  ITG  ++  
Sbjct: 123 ITTASGVLEAEARALNPGFISRMEQGRPYVRVKLAMSLDGRTAMASGESRWITGEAARRD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN------GLQEHSPMRIILDPHFKLSLDSKI 236
           V  LRA++ AIL G GTVLAD+P L  RL+            P+R++LD     + ++K+
Sbjct: 183 VQRLRARAGAILTGSGTVLADNPGLDVRLSAQELGIEGPVRQPLRVVLDTRLACTPEAKL 242

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLV 292
             T    P +++T   D       +     +          DL  +L +L  RG+  L V
Sbjct: 243 FTTG--GPALVLTAEQDTARYTQLQACGAEVEAVASAPRGLDLHAVLELLARRGINELHV 300

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           E G  +  S + + LVD +++Y +  ++G    
Sbjct: 301 EAGPILCGSLMQAGLVDELVIYMAPHLMGNDAR 333


>gi|268685855|ref|ZP_06152717.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268626139|gb|EEZ58539.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 369

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 125/365 (34%), Positives = 184/365 (50%), Gaps = 11/365 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  +   M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +
Sbjct: 2   FSDTNISMMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   
Sbjct: 62  AGEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  +  ++E++ +     +L+R   +R  + LK AVS D    ++   S  ITG  ++ 
Sbjct: 122 GIKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V +LRA+S A+L GIGTVLAD+P L  R        P RI+LD   +L  +S ++    
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPNSHLVTDGQ 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGA 296
               I   E D+  L       +I I+          DL  L+ +L   G   ++VE G 
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETAGGKIDLHHLIRLLADEGFGEIMVEAGC 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +  +F+   L D I+LYRS  ++G G     +P           +  V  +  G D+  
Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGGGKDLFSLPENRAALSAPPLWTPVSSEILGHDIKT 360

Query: 353 EYIGK 357
            +   
Sbjct: 361 VFRKN 365


>gi|318042152|ref|ZP_07974108.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Synechococcus sp. CB0101]
          Length = 359

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 115/358 (32%), Positives = 184/358 (51%), Gaps = 9/358 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE 61
           +SS    +M  AL+ +    G TS NP V C+++ + G ++G G     G PHAEV AL 
Sbjct: 1   MSSPWRPWMQRALQLAALGNGRTSPNPLVGCVVLDRAGQLVGEGFHQRAGTPHAEVHALR 60

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +AGE ARG TA VTLEPC H+GR+PPC++ ++  G+ RVVV + DPD RV+G+GL  L  
Sbjct: 61  QAGERARGGTAVVTLEPCCHHGRTPPCSEALLAAGVARVVVAMRDPDPRVAGKGLAQLRD 120

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            G+ +++ + E+E +I    +L R  + R    LK A+S D    +    S  I+G  ++
Sbjct: 121 AGVDVLEGVCEAEARILNRGFLHRVEQGRPLGLLKWAMSLDGRTALPNGSSQWISGPPAR 180

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             VH LRAQ DA++VG GTV AD+P LT R  G +   P+R+++     L   +++   +
Sbjct: 181 AWVHHLRAQCDAVIVGGGTVRADNPLLTSR--GQRTPEPLRVVISRSLDLPKQAQLWNQS 238

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
             A +++ + +             +  +  +  +  +LL  L  RG   +L E G  +A 
Sbjct: 239 EAATLVVHSSSAPAEQLDRLDGLGVERLVLERCEPLELLEALGQRGCNQVLWECGPELAA 298

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE 353
           + +    V  +    +  ++G     +PL +  L        +   R    G+D  LE
Sbjct: 299 AALRQGCVQQVAAVLAPKLLGGTAARTPLGDLGLVDVNQAVAWSRSRLQQLGNDCLLE 356


>gi|285019600|ref|YP_003377311.1| riboflavin biosynthesis RibD oxidoreductase [Xanthomonas
           albilineans GPE PC73]
 gi|283474818|emb|CBA17317.1| probable riboflavin biosynthesis ribd oxidoreductase protein
           [Xanthomonas albilineans]
          Length = 369

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 122/326 (37%), Positives = 178/326 (54%), Gaps = 4/326 (1%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S+ D R+M+ ALR +      T  NP V C+IV+D   +G G     G PHAEV AL  
Sbjct: 4   FSAADHRWMAQALRLAERGAYTTRPNPMVGCVIVRDDEQVGEGFHQRAGGPHAEVFALRA 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPC+HYGR+PPCA  +IE G+ RVVV + DP  +V+G G   L + 
Sbjct: 64  AGEYARGATAYVTLEPCAHYGRTPPCALALIEAGVARVVVAMADPFPQVNGGGFALLREA 123

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   +ME + +     +L+R    R  + +K+  S D    +A   S  ITG  ++ 
Sbjct: 124 GIAVQSGLMEEQARALNRGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITGAAARQ 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-SPMRIILDPHFKLSLDSKIIKTA 240
            V   RA++ AIL G GTVLADDP LT RL    E   P+R++LD   +    SK+   A
Sbjct: 184 DVQRWRARAGAILSGAGTVLADDPVLTVRLGEATEVLPPLRVVLDAQLRTLARSKVRDGA 243

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
             AP + +         L   +     ++    DL  +L +L  RG+  + VE GA +  
Sbjct: 244 --APTLYLHAPASVPPTLPNAEFAAVALHEGRLDLDAVLRLLAARGINEVQVEAGATLGG 301

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIP 326
           + + + +VD +++Y + +++G+   P
Sbjct: 302 ALLRAGMVDEVLVYLAPVLLGDAARP 327


>gi|261381200|ref|ZP_05985773.1| riboflavin biosynthesis protein RibD [Neisseria subflava NJ9703]
 gi|284795821|gb|EFC51168.1| riboflavin biosynthesis protein RibD [Neisseria subflava NJ9703]
          Length = 372

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 125/365 (34%), Positives = 190/365 (52%), Gaps = 11/365 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S+ D + M  AL  ++     TS NP V C+I     ++G+G     G PHAEV AL +
Sbjct: 2   FSALDTQMMQTALELAKLGRFSTSPNPRVGCVIAHGAQIVGQGFHVKAGEPHAEVHALRQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  A+GATAYVTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  VSG+GL  L   
Sbjct: 62  AGAAAKGATAYVTLEPCSHYGRTPPCAEALVHSGVTRVVAAMTDPNPLVSGKGLSMLEAA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  +  ++E++ +     +L+R    R  + LK A S D    ++   S  ITG  ++ 
Sbjct: 122 GIRTESGLLEAQARELNRGFLSRIERGRPFVRLKCAASLDGKTALSDGRSFWITGEAARE 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V +LRA+S A+L GIGTVLAD+P+L  R +      P RI+LD   ++ LD  ++    
Sbjct: 182 DVQILRAESCAVLTGIGTVLADNPKLNVR-SFPTLRQPARIVLDSRLQIPLDCHLVTDTD 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296
              VI+   +D+  L    + ++I II          +L  L+  L   G   +LVE G+
Sbjct: 241 SPTVIVTLSSDEQRLQALGKFEHIRIIRPSEHINGRINLLSLMPQLAELGFGEVLVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +  +F+   LVD I+LY++  ++G G     +P        +  +     +  G D+  
Sbjct: 301 TLTSAFLKDDLVDEIVLYQAPKLLGAGKPLFSLPENPAALLSDGPWQSQSVEIIGQDIKW 360

Query: 353 EYIGK 357
               K
Sbjct: 361 VLRKK 365


>gi|331018226|gb|EGH98282.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 378

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 126/364 (34%), Positives = 184/364 (50%), Gaps = 20/364 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            ++ D  +M+ AL  +R  +  T  NP V C+IV+DG ++G+G  A  G PHAEV AL E
Sbjct: 5   QAALDVHYMAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALRE 64

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH GR+PPCA  +I  G+ RVV  + DP+ +V+G GL  L   
Sbjct: 65  AGELARGATAYVTLEPCSHQGRTPPCADALISAGLARVVAAMQDPNPQVAGSGLLRLMTA 124

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E E +     ++ R    R ++ +K+A+S D    MA   S  ITG  +++
Sbjct: 125 GISVQCGVLEGEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARS 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRAQS  +L G  TVLAD   LT R + L              P+R+++D   ++ 
Sbjct: 185 AVQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVP 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVT 288
           LD+   +       ++VT              +  +   D     DL++L+  L  RGV 
Sbjct: 245 LDTPFFQAGSA---LVVTCAAASARGRYQEDGHEMLALADSAGHVDLRRLMGELGARGVN 301

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345
            +LVE G  +A +F    LVD   L+ +   +G    P    PL +         +    
Sbjct: 302 EVLVEAGPRLAGAFTRLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIIEMRA 361

Query: 346 FGSD 349
            G+D
Sbjct: 362 VGND 365


>gi|330815804|ref|YP_004359509.1| Pyrimidine reductase, riboflavin biosynthesis [Burkholderia
           gladioli BSR3]
 gi|327368197|gb|AEA59553.1| Pyrimidine reductase, riboflavin biosynthesis [Burkholderia
           gladioli BSR3]
          Length = 372

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 123/368 (33%), Positives = 187/368 (50%), Gaps = 25/368 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  S   +  TS NP V C+IVKD +VIG G T   G  HAEVQA+++
Sbjct: 2   FSESDFAHMQRALDLSSRGMYTTSPNPRVGCVIVKDEVVIGEGYTQPAGQDHAEVQAMKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + RGAT YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+  VSG+GL  L
Sbjct: 62  ARSRGHDLRGATVYVTLEPCSHFGRTPPCALGLIDARVAKVVAAMEDPNPLVSGKGLGML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++  E +     +++R    +  + +K A+S D    +    S  ITG  
Sbjct: 122 RDAGIEVRCGLLAQEAREMNIGFVSRMTRGQPWVRMKSAISLDGRTALPDGQSQWITGEA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H  RA++ AIL GIGTV  DDP+LT R        P+R+++D   ++SL++K++ 
Sbjct: 182 ARADGHAWRARACAILTGIGTVREDDPQLTVR-GIDTPRQPLRVLVDSRLEVSLEAKLLS 240

Query: 239 TALLAPVIIVTENDDPV---LALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291
               AP++I     D      A A R +   ++         DL  LL  L  RG+  L 
Sbjct: 241 G---APILIFCGELDAAGEGRAAALRDRGAEVVPLAGPNGKVDLPALLQALGKRGINELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344
           VE G  +  S +    VD +++Y +  ++G+          P+ LE+            D
Sbjct: 298 VEAGHKLNGSLLREGCVDELLIYVAPTLLGDNAAGMFNLAAPATLEQ---RTRLQFHTID 354

Query: 345 YFGSDVCL 352
             G ++ +
Sbjct: 355 RIGDELRI 362


>gi|28867918|ref|NP_790537.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28851154|gb|AAO54232.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 381

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 126/364 (34%), Positives = 184/364 (50%), Gaps = 20/364 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            ++ D  +M+ AL  +R  +  T  NP V C+IV+DG ++G+G  A  G PHAEV AL E
Sbjct: 8   QAALDVHYMAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALRE 67

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH GR+PPCA  +I  G+ RVV  + DP+ +V+G GL  L   
Sbjct: 68  AGELARGATAYVTLEPCSHQGRTPPCADALISAGLARVVAAMQDPNPQVAGSGLLRLMTA 127

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E E +     ++ R    R ++ +K+A+S D    MA   S  ITG  +++
Sbjct: 128 GISVQCGVLEGEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARS 187

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRAQS  +L G  TVLAD   LT R + L              P+R+++D   ++ 
Sbjct: 188 AVQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVP 247

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVT 288
           LD+   +       ++VT              +  +   D     DL++L+  L  RGV 
Sbjct: 248 LDTPFFQAGSA---LVVTCAAASARGRYQEDGHEMLALADSAGHVDLRRLMGELGARGVN 304

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345
            +LVE G  +A +F    LVD   L+ +   +G    P    PL +         +    
Sbjct: 305 EVLVEAGPRLAGAFTRLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIIEMRA 364

Query: 346 FGSD 349
            G+D
Sbjct: 365 VGND 368


>gi|21673577|ref|NP_661642.1| riboflavin biosynthesis protein RibD [Chlorobium tepidum TLS]
 gi|21646689|gb|AAM71984.1| riboflavin biosynthesis protein RibD [Chlorobium tepidum TLS]
          Length = 373

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 122/363 (33%), Positives = 176/363 (48%), Gaps = 13/363 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D  +M   L  +    G  S NP V  +IV  G VIG G     G PHAEV A+    
Sbjct: 11  PEDETYMWRCLELAERGAGSVSPNPMVGSVIVCAGRVIGEGWHRQYGGPHAEVDAIASVE 70

Query: 65  EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           +E   R +T YV LEPCSHYG++PPCA  I+E  I RVVV   DP  +V+G+G+  L + 
Sbjct: 71  DESLLRQSTLYVNLEPCSHYGKTPPCADLIVEKRIPRVVVGCLDPHEKVAGKGIARLREA 130

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E+E +    A++T   + R  + LK A + D  I  +   S  ITG  S+ 
Sbjct: 131 GIEVTVGVLEAESERLNEAFMTSHRKGRPFVALKTAQTLDGRIATSLGASKWITGEESRC 190

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           QVH LR   DA+L G  TVLAD+ ELT R        P+R++LDP  ++  + +I   A 
Sbjct: 191 QVHRLRCIYDAVLCGASTVLADNTELTVRFCA--GRQPLRVLLDPRLQVPHEFRIFNDAA 248

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAA 297
              V  + E  DP L      + I +          D  ++   L  R + S+LVEGG+ 
Sbjct: 249 KTLVFALREEADPDLVRQLEARGIEVATVGEAEGSLDFAEVFAELHKRRLLSVLVEGGSR 308

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV----RRDYFGSDVCLE 353
           +A + + S  VD   ++ +  + G  G+ S    G    ++           FG D+ LE
Sbjct: 309 LASAMVRSGFVDKYYVFIAPKLFGGDGLASFGALGVTHPDYAVKLSFSGIRRFGEDLLLE 368

Query: 354 YIG 356
              
Sbjct: 369 AYP 371


>gi|108757223|ref|YP_632926.1| riboflavin biosynthesis protein RibD [Myxococcus xanthus DK 1622]
 gi|108461103|gb|ABF86288.1| riboflavin biosynthesis protein RibD [Myxococcus xanthus DK 1622]
          Length = 387

 Score =  339 bits (869), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 127/363 (34%), Positives = 185/363 (50%), Gaps = 11/363 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             FM  AL  +   +G TS NP V  ++VK G +I RG     G  HAEV ALE AG  A
Sbjct: 29  EFFMRIALEEAAKGLGRTSPNPVVGAVLVKGGRIIARGYHKKAGSAHAEVVALEAAGARA 88

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           +GA  Y TLEPC HYGR+PPC+  IIE G+RRV+    DP+ +VSG+G+  + + G+ ++
Sbjct: 89  KGADLYTTLEPCDHYGRTPPCSMAIIEAGVRRVICASADPNPKVSGKGVSRMRRAGLKVL 148

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++  +       +          +TLK AV+ D  +  A   S  +TG  ++  VH L
Sbjct: 149 TGVLAEDADRLNRPFFKMIRTGLPWVTLKAAVTLDGKLATATGDSRWVTGAPARAWVHRL 208

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R   D ILVG  TV  DDP+LT RL G     P+R+++D H +LS    I      A  +
Sbjct: 209 RDSVDVILVGANTVRKDDPKLTTRLPGGGGKDPLRVVVDSHLRLSPGYTIFTQRSAARTV 268

Query: 247 IVT-ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           + T E+ +   A  F  + +++     +    DLK LL  L   G   ++VEGGA +  S
Sbjct: 269 VATLEDPEGRKARRFLAQGVDVWQLREKAGQVDLKALLRRLAKGGHNHVMVEGGAEMYGS 328

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           F+  RL DS+ L+ +  +IG  G+    + G  E       +     D+  E  G ++ L
Sbjct: 329 FLRGRLADSLALFLAPKLIGSPGLSWAGDLGVKEMAQALAVK-----DLAFERHGDDILL 383

Query: 362 QEL 364
           Q L
Sbjct: 384 QAL 386


>gi|332141886|ref|YP_004427624.1| Riboflavin biosynthesis protein RibD [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327551908|gb|AEA98626.1| Riboflavin biosynthesis protein RibD [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 379

 Score =  339 bits (869), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 112/370 (30%), Positives = 177/370 (47%), Gaps = 24/370 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA-- 63
           D  +M+ A++ +      TS NP V C+IV  D  ++G+G     G PHAEV AL +A  
Sbjct: 9   DYYWMAKAIQLANKGRFTTSPNPRVGCVIVDEDSQLLGQGYHIQAGTPHAEVHALRQAAH 68

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
              E A+GATAYVTLEPCSH+GR+PPCA+ ++E  + RVV+ + DP+  V G G+  L +
Sbjct: 69  ARSEGAKGATAYVTLEPCSHFGRTPPCAKALVEAQVARVVIAMTDPNPNVCGNGISMLQE 128

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +V  +M +E       ++ R +  +  + +K+ +S D  I +    S  IT   ++
Sbjct: 129 AGIEVVSEVMAAEAAALNPGFIKRMLTGKPFVRVKLGISVDGKIALQNGVSQWITTPEAR 188

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--------EHSPMRIILDPHFKLSL 232
             V   RAQS  +L G GTV AD+P L  R    Q           P R+++D    LS 
Sbjct: 189 RDVQHYRAQSCVVLTGSGTVKADNPSLLVRGKEAQFDDYPLEHVRQPARVVVDSKSTLSR 248

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLL 291
           D  +     +      T    P  A    +  + +   D + DL  L+  L  +    + 
Sbjct: 249 DFALFNDGNM--TFTATSQAHPDTAS---QHYLQLDEKDGKLDLHALMLALGDKQFNEVW 303

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFG 347
           VE G  +A + +   LVD +I Y++  ++G+ G+       +   N       +     G
Sbjct: 304 VEAGPGLAGALLQEGLVDELICYQAPKLLGDKGVSMVNLPAFTALNQSISLSLIENRQVG 363

Query: 348 SDVCLEYIGK 357
           +D+ L +   
Sbjct: 364 NDIKLIFRPD 373


>gi|257453179|ref|ZP_05618478.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium
           sp. 3_1_5R]
 gi|317059713|ref|ZP_07924198.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium sp. 3_1_5R]
 gi|313685389|gb|EFS22224.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium sp. 3_1_5R]
          Length = 359

 Score =  339 bits (869), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 110/359 (30%), Positives = 183/359 (50%), Gaps = 11/359 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  ++   G  + NP V  ++VK+G +IG+G     G PHAEV AL+EAGEE
Sbjct: 3   DLEYMHLALELAKHGEGRVNPNPLVGAVVVKNGKIIGKGYHHEYGGPHAEVFALQEAGEE 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSHYG++PPCA+ II+ GI+R V+ + DP+  V+G+G+  +   GI +
Sbjct: 63  AKGATIYVTLEPCSHYGKTPPCAKKIIDSGIKRCVISMGDPNPLVAGKGISMMRDAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              + E+E +     +L     K   + LK  ++ D  +      S  IT  I++ +V  
Sbjct: 123 EIGLCETEARALNRVFLKYISTKLPFLFLKCGITLDGKLATRNFQSKWITNEIAREKVQK 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR +   I+VG+ TV+ D+P L  R+       P RII+DP+ ++ L SK++       V
Sbjct: 183 LRNKYTGIMVGVHTVIEDNPSLDARIE--NGRDPYRIIVDPYLEIPLSSKLLHRHDKKTV 240

Query: 246 IIVT-ENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           II +    +              I+ + R     ++L  +   G+ S+L+EGG  +  S 
Sbjct: 241 IITSFLEKETQKKKELDDLETRFIFLEDRIFSWPQMLIEIGKLGIDSVLLEGGGQLISSA 300

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356
               ++D   ++ +  ++G+    + +     E          V    +G++  +E+  
Sbjct: 301 FREDVIDGGEIFIAPKILGDKEAVAFVSGFSKESMDEAITLPNVELHQYGNNCSMEFYR 359


>gi|297617055|ref|YP_003702214.1| riboflavin biosynthesis protein RibD [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144892|gb|ADI01649.1| riboflavin biosynthesis protein RibD [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 364

 Score =  339 bits (869), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 128/359 (35%), Positives = 186/359 (51%), Gaps = 11/359 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           S D ++M  A+  +   +G TS NP V  ++V +G V+G G     G PHAE+ AL +AG
Sbjct: 2   SIDEKYMGRAVELAVQALGRTSPNPVVGAVVVLEGEVVGEGYHQLAGTPHAEIHALNQAG 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGAT YVTLEPC HYG++PPC   II  GI+RVVV + DP+ +VSG+G+  L   GI
Sbjct: 62  ERARGATLYVTLEPCCHYGKTPPCVDAIIGSGIKRVVVAIQDPNPQVSGQGIARLKAAGI 121

Query: 125 IVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V+  +  E  +     +          + LK A++ D  I      S  +TG  ++  V
Sbjct: 122 EVEVGVLEEEARRANEFFFKFITTGMPFVALKTAMTMDGKIATRTGDSRWVTGEKARRFV 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H LR   DA+LVG+GTVL D+P L  RL+   +  PMR+ILD   ++ LDS+I+ T+   
Sbjct: 182 HELRNIYDAVLVGVGTVLKDNPMLNTRLDVAGKRDPMRVILDGRLEIPLDSQIVLTSNQQ 241

Query: 244 PVIIVTE-NDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAV 298
             ++VT    D           + ++      D   L  +L  L   GVTS+LVEGG  V
Sbjct: 242 CTLVVTSRKADIGKIAVLEDAGVEVLQLGDKPDFIPLVPVLEELARLGVTSILVEGGGQV 301

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCL 352
             SF+ + LVD +  + +  + G    P+P+    +E      +        F  DV +
Sbjct: 302 NASFLEAGLVDKVYWFIAPKICGGESAPTPVRGTGVEMMDQARKLRQFDLSRFDDDVLI 360


>gi|194364355|ref|YP_002026965.1| riboflavin biosynthesis protein RibD [Stenotrophomonas maltophilia
           R551-3]
 gi|194347159|gb|ACF50282.1| riboflavin biosynthesis protein RibD [Stenotrophomonas maltophilia
           R551-3]
          Length = 361

 Score =  339 bits (869), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 125/356 (35%), Positives = 179/356 (50%), Gaps = 7/356 (1%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P S  D   M+ ALR +      T  NP V C+I     V+G+G     G PHAEV AL 
Sbjct: 4   PFSVLDHLHMANALRLAERAAYTTRPNPMVGCVIAHGERVVGQGWHQRAGGPHAEVFALR 63

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           EAG EARGATAYVTLEPC+HYGR+PPCA  +IE G+ RVV  + DP  +V G G   L  
Sbjct: 64  EAGSEARGATAYVTLEPCAHYGRTPPCALALIEAGVSRVVAAMRDPFPKVDGGGFDLLRN 123

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI + + +M ++ +     +L+R    R  + +K+A S D    MA   S  ITG  ++
Sbjct: 124 AGIEVAEGLMAAQARELNKGFLSRVERNRPWLRVKLAASLDGRTAMADGSSKWITGPAAR 183

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             V   RA++ AIL G  TVLADDP LT RL   +   P+R++LD   +    S++    
Sbjct: 184 EDVQHWRARAGAILTGADTVLADDPMLTVRLADTEVMPPLRVVLDSRLRSLECSRV--RE 241

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
             AP + +          A  +           DL  +L +L  RG+  +  E GA +A 
Sbjct: 242 GGAPTLYLHAAAVSAPDAADAEFASVPSADGRLDLGAVLALLAERGINEVHTEAGATLAG 301

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCL 352
           + +    VD ++LY++  ++G+ G P     G      ++    V +   G D+ L
Sbjct: 302 ALLRGGWVDELLLYQAPTLLGDNGRPLLAGLGIDAMDQQRRLRVVDQRQVGEDIRL 357


>gi|163803478|ref|ZP_02197350.1| hypothetical protein 1103602000439_AND4_19771 [Vibrio sp. AND4]
 gi|159172738|gb|EDP57587.1| hypothetical protein AND4_19771 [Vibrio sp. AND4]
          Length = 375

 Score =  339 bits (869), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 119/368 (32%), Positives = 177/368 (48%), Gaps = 28/368 (7%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             +S D   MS AL+ ++  +  T+ NP+V C+IV+DG ++G G     G PHAEV A+ 
Sbjct: 10  TFTSQDFEMMSRALKLAKRGIYTTAPNPNVGCVIVRDGEIVGEGHHHRAGEPHAEVHAMR 69

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG++ +GATAYVTLEPCSHYGR+PPCA+ +I+  + RVV   +DP+ +V+GRG Q L  
Sbjct: 70  MAGDKTQGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCATEDPNPKVAGRGFQMLRD 129

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            G+ +   +++SE       ++        +I LK+A S D    ++   S  IT   ++
Sbjct: 130 AGVDVQVGLLQSEAIELNKGFIKFMQTGMPYIQLKMAASLDGQSALSNGQSQWITSPKAR 189

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFK 229
             V   RA S  IL    TVLAD+  L  R + L +             P R+I D   +
Sbjct: 190 QDVQRYRALSGGILSSSKTVLADNASLNVRWDDLPKSVQTQYLKQDVRQPSRVIFDRQSQ 249

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVT 288
           LS D K+  T      IIV +  D             +      DL   L ++     + 
Sbjct: 250 LSDDLKLFNTDGER--IIVRQGGD---------ICPELDENGQIDLAATLKVVASECHIN 298

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRD 344
            L VE GA +A S I + LVD +I+Y +  ++G  G        L E     +       
Sbjct: 299 HLWVEAGATLASSLIKANLVDELIVYLAPKLMGSDGRGLIGALGLTEMAQVIDLTITDVR 358

Query: 345 YFGSDVCL 352
             G D+ +
Sbjct: 359 MVGVDIRI 366


>gi|330964923|gb|EGH65183.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 378

 Score =  338 bits (868), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 126/364 (34%), Positives = 184/364 (50%), Gaps = 20/364 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            ++ D  +M+ AL  +R  +  T  NP V C+IV+DG ++G+G  A  G PHAEV AL E
Sbjct: 5   QAALDVHYMAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALRE 64

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH GR+PPCA  +I  G+ RVV  + DP+ +V+G GL  L   
Sbjct: 65  AGELARGATAYVTLEPCSHQGRTPPCADALISAGLGRVVAAMQDPNPQVAGSGLLRLMTA 124

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E E +     ++ R    R ++ +K+A+S D    MA   S  ITG  +++
Sbjct: 125 GISVQCGVLEGEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARS 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRAQS  +L G  TVLAD   LT R + L              P+R+++D   ++ 
Sbjct: 185 AVQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVP 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVT 288
           LD+   +       ++VT              +  +   D     DL++L+  L  RGV 
Sbjct: 245 LDTPFFQAGSA---LVVTCAAASARGRYQEDGHEMLALADSAGHVDLRRLMGELGARGVN 301

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345
            +LVE G  +A +F    LVD   L+ +   +G    P    PL +         +    
Sbjct: 302 EVLVEAGPRLAGAFTRLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIIEMRA 361

Query: 346 FGSD 349
            G+D
Sbjct: 362 VGND 365


>gi|330877574|gb|EGH11723.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 378

 Score =  338 bits (868), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 127/364 (34%), Positives = 185/364 (50%), Gaps = 20/364 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            ++ D  +M+ AL  +R  +  T  NP V C+IV+DG ++G+G  A  G PHAEV AL E
Sbjct: 5   QAALDVHYMAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALRE 64

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH GR+PPCA  +I  G+ RVV  + DP+ +V+G GL  L   
Sbjct: 65  AGELARGATAYVTLEPCSHQGRTPPCADALISAGLGRVVAAMQDPNPQVAGSGLLRLMTA 124

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++ESE +     ++ R    R ++ +K+A+S D    MA   S  ITG  +++
Sbjct: 125 GISVQCGVLESEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARS 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRAQS  +L G  TVLAD   LT R + L              P+R+++D   ++ 
Sbjct: 185 AVQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVP 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVT 288
           LD+   +       ++VT              +  +   D     DL++L+  L  RGV 
Sbjct: 245 LDTPFFQAGSA---LVVTCAAASARGRYQEDGHEMLALADSAGHVDLRRLMGELGARGVN 301

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345
            +LVE G  +A +F    LVD   L+ +   +G    P    PL +         +    
Sbjct: 302 EVLVEAGPRLAGAFTRLGLVDEFQLFTAGKFLGSSARPLLDLPLAQMSEALELNIIEIRA 361

Query: 346 FGSD 349
            G+D
Sbjct: 362 VGND 365


>gi|323497966|ref|ZP_08102975.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           [Vibrio sinaloensis DSM 21326]
 gi|323317011|gb|EGA70013.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           [Vibrio sinaloensis DSM 21326]
          Length = 368

 Score =  338 bits (868), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 121/372 (32%), Positives = 189/372 (50%), Gaps = 29/372 (7%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            SS D + MS A+  ++  V  T+ NP+V C+I ++  V+G G     G PHAEV AL  
Sbjct: 4   FSSIDFQMMSRAIDLAKGGVYTTAPNPNVGCVITRNEEVVGEGFHYRAGEPHAEVHALRM 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE++ GATAYVTLEPCSHYGR+PPCA+ +I+  + +V+    DP+ +V+GRG++ L   
Sbjct: 64  AGEQSVGATAYVTLEPCSHYGRTPPCAEGLIKAKVAKVICASQDPNPQVAGRGIKMLRDA 123

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E E       ++ R      ++ LK+A S D    +A   S  IT   ++ 
Sbjct: 124 GIEVEVGLLEQEALALNPGFIKRMKTGLPYVQLKMAASLDGQTALANGQSQWITSPQARQ 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V   RA+S AIL    TV+ D+  L  R + L E             P R+ILD   KL
Sbjct: 184 DVQQWRARSGAILSTSKTVIEDNASLNVRWSELPESIQQRYSQTDLRQPTRVILDRQNKL 243

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTS 289
           + D K+  +      ++V+E+ +  ++L  +++          DL+  L  L     +  
Sbjct: 244 TPDLKLFHSPGER--LVVSEHGEVAMSLNEQQQ---------IDLEATLACLAQQHNINH 292

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           + VE GA +A S I  +LVD +ILY +  ++G       L    LE     +  +    D
Sbjct: 293 VWVEAGATLASSLIREQLVDELILYFAPKLMGSDSR-GLLGALGLESMTDVIDLNI--KD 349

Query: 350 VCLEYIGKNLCL 361
           V    +GK++ +
Sbjct: 350 V--RQVGKDIRI 359


>gi|323144123|ref|ZP_08078762.1| riboflavin biosynthesis protein RibD [Succinatimonas hippei YIT
           12066]
 gi|322416100|gb|EFY06795.1| riboflavin biosynthesis protein RibD [Succinatimonas hippei YIT
           12066]
          Length = 366

 Score =  338 bits (868), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 117/364 (32%), Positives = 187/364 (51%), Gaps = 23/364 (6%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL+ +      TS NP+V C+IV++G++IG G     G PHAE+ A+  AG    GA
Sbjct: 1   MKRALKLAARGKFTTSPNPAVGCVIVRNGMIIGEGYHHKAGEPHAEIMAMRSAGSSVAGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129
           T YVTLEPCSHYGR+PPCA+ +++ G++RVV+   DP+ +V+GRG++ L   GI VD  +
Sbjct: 61  TCYVTLEPCSHYGRTPPCAKALVKAGVKRVVIACGDPNPQVAGRGVKILKDAGIEVDVGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            E++      A+    V+   ++T+KI +S D  I ++   S  IT   S+  V  +RA 
Sbjct: 121 YENKALKLNRAFFKSIVKNIPYVTVKIGMSLDAKIALSDGRSKWITSEKSRQTVQKMRAA 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLSLDSKIIK 238
           SDAI+ G GTV+AD+P L  R + L           +E  P+R++LD   +++ D  ++ 
Sbjct: 181 SDAIITGSGTVIADNPLLNVRYDELSAKVFEKYDINKEKQPLRVVLDSRQRINPDDYVMF 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVE 293
                 V++V  + D         +++ I Y  C       +  +L+ L  R    +LVE
Sbjct: 241 --SQGKVLLVRPSLDSKNISEQINEHLEIFYAPCDFAGRICISAVLSELSKRQCRKVLVE 298

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSD 349
            G  +  SF+  RL D + L+ +  V+G     +     +      K +  +     G D
Sbjct: 299 AGPTLVASFLQERLADELALFVAPKVLGVNAKTAFACDEVSSLDCLKPYKILTIKRSGKD 358

Query: 350 VCLE 353
             + 
Sbjct: 359 FFVR 362


>gi|255320997|ref|ZP_05362170.1| riboflavin biosynthesis protein RibD [Acinetobacter radioresistens
           SK82]
 gi|262379913|ref|ZP_06073068.1| riboflavin biosynthesis protein RibD [Acinetobacter radioresistens
           SH164]
 gi|255301961|gb|EET81205.1| riboflavin biosynthesis protein RibD [Acinetobacter radioresistens
           SK82]
 gi|262298107|gb|EEY86021.1| riboflavin biosynthesis protein RibD [Acinetobacter radioresistens
           SH164]
          Length = 362

 Score =  338 bits (868), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 118/361 (32%), Positives = 180/361 (49%), Gaps = 18/361 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D  +M  A+  +R     T  NP+V C+IVKDG +IG G     G PHAEV AL +AG
Sbjct: 6   DQDYFYMRRAIELARLGQYSTKPNPNVGCVIVKDGQIIGEGYHPRAGQPHAEVFALRQAG 65

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E+A+ ATAYVTLEPC+HYGR+PPCA+ +++  +++VV+   DP+  V+G+G+  L Q GI
Sbjct: 66  EQAQDATAYVTLEPCAHYGRTPPCAEALVKHQLKKVVIACPDPNPLVAGKGIAILKQAGI 125

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   + E+E       +L        ++ LK+A S D    MA   S  ITG  ++  V
Sbjct: 126 EVESGICENEAAQLNCGFLKAMAVGMPYVRLKVASSLDGRTAMASGESKWITGKAARQDV 185

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEH---SPMRIILDPHFKLSLDSKIIKT 239
              RA S  ++ GI TVL DD +L  R L+G        P R++LD   +L L ++I+ +
Sbjct: 186 QHWRAISGVVITGIQTVLTDDCQLNVRCLSGTDLQTVVQPKRLVLDRQGQLPLTARILAS 245

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVEGGAAV 298
                V+                 ++ +I    + LK LL  L     +  +LVE GA +
Sbjct: 246 PEQLMVM---------GPFRQELADLGVIQLPLQPLKGLLQTLCNQYQIFDVLVEAGATL 296

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           + +F+  +LVD +I Y +   +G+       +       +  F        G D+ L  I
Sbjct: 297 SSAFLQEKLVDEMISYVAPTFLGQSARAMFNAEFISMAEQLRFKLEDATIVGDDLRLRLI 356

Query: 356 G 356
            
Sbjct: 357 P 357


>gi|110633489|ref|YP_673697.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Mesorhizobium sp. BNC1]
 gi|110284473|gb|ABG62532.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chelativorans
           sp. BNC1]
          Length = 370

 Score =  338 bits (868), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 172/365 (47%), Positives = 232/365 (63%), Gaps = 10/365 (2%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI----VIGRGVTAYGGCPHAEV 57
           P+S+ D RFM+AA+R SR H+GLT  NPSV CLIV+D      ++GR VTA GG PHAE 
Sbjct: 5   PISAHDRRFMAAAVRLSRRHLGLTGANPSVGCLIVRDDGEGPYIVGRAVTAIGGRPHAES 64

Query: 58  QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           QALEEAGE ARGATAYVTLEPC+H+GR+PPC+  +I  G+ RVV    DPD+RVSG+G  
Sbjct: 65  QALEEAGELARGATAYVTLEPCAHHGRTPPCSLALIAAGVARVVGAASDPDLRVSGKGYS 124

Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
            L   GI +V+ ++ +E    L  YLTR  +KR  +TLK+A+S D  IG  G G V IT 
Sbjct: 125 MLRAAGIEVVEGLLAAEAADLLAGYLTRSTKKRPEVTLKVALSADMKIGREGQGQVRITE 184

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
            I++ QVH++RA++DAIL+G GT LADDP LT RL GL+  SP RI+LD H +L  DS +
Sbjct: 185 AIARRQVHMMRAEADAILIGNGTALADDPLLTSRLPGLEARSPARIVLDRHLRLPPDSVL 244

Query: 237 IKTALLAPVIIVTEND-DPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLL 291
           + TA   P+++    D D     A     + +I  +  D    L + L  L  RG+++L+
Sbjct: 245 VSTAREVPLLVTAAQDVDSERRAALAAAGVELIGVEAFDGHIALPEFLEDLAARGISTLM 304

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           VEGGA  A  F++  LVD + L+  +  IG+ GI SP++  ++   F   R   FG D+ 
Sbjct: 305 VEGGAFTAREFLSEDLVDRLCLFVGRGKIGDEGIASPVDLDHIPSGFAKRREARFGEDLY 364

Query: 352 LEYIG 356
            EY+ 
Sbjct: 365 FEYVR 369


>gi|224370210|ref|YP_002604374.1| RibD [Desulfobacterium autotrophicum HRM2]
 gi|223692927|gb|ACN16210.1| RibD [Desulfobacterium autotrophicum HRM2]
          Length = 381

 Score =  338 bits (867), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 118/362 (32%), Positives = 191/362 (52%), Gaps = 13/362 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  A+  +    G T+ NP V  ++VK+  V+G+G     G  HAEV A+++AG+ ARG
Sbjct: 20  FMEQAICLAEQGRGYTAPNPMVGAVVVKNNQVVGQGWHKGPGLAHAEVNAIDDAGDLARG 79

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           +  YVTLEPC+H GR+PPC + I+  GIRRV V  +DP+  V+G G+++L ++G+ +   
Sbjct: 80  SDLYVTLEPCNHTGRTPPCTEKILRAGIRRVFVGTEDPNPFVAGGGIKFLKERGVAVKVG 139

Query: 129 MMESEGKIFLHAYLTR-QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
           +     +  +  ++   + +K+  + LK A + D  +      S  IT   S+  VH LR
Sbjct: 140 ICRRASETLIEDFIWYVKNDKQPFVVLKCAATLDGQLATRTGDSKWITNEASRKYVHRLR 199

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
              DAI+VG GT+ AD+P LT R+       P+R+ILD    +  DS++      A  ++
Sbjct: 200 HWVDAIVVGAGTIRADNPSLTTRIENFDGRDPLRVILDAQLSIDPDSQVFTQQSSAKTMV 259

Query: 248 V-TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             +   DP     F+ + I ++    +    DL  L   L  RGV SLL+EGG  V HS 
Sbjct: 260 AISRRADPERCALFKHRGIELLVLPEKEGIIDLACLGEALGQRGVVSLLIEGGGRVVHSA 319

Query: 303 INSRLVDSIILYRSQIVIGE-GGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLE-YIG 356
           + + +V+ I L+ +  ++G   G+P     G    N       V  + F +D+ ++ Y+ 
Sbjct: 320 LAAGVVNKIYLFFAPKLLGGNDGVPMCRGRGPELMNDALGLSQVEVERFDNDILIKGYLK 379

Query: 357 KN 358
           +N
Sbjct: 380 QN 381


>gi|319651135|ref|ZP_08005268.1| riboflavin specific deaminase [Bacillus sp. 2_A_57_CT2]
 gi|317397189|gb|EFV77894.1| riboflavin specific deaminase [Bacillus sp. 2_A_57_CT2]
          Length = 365

 Score =  338 bits (867), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 116/353 (32%), Positives = 177/353 (50%), Gaps = 9/353 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M  A+  +    G TS NP V  ++VK+G ++G G     G PHAEV A+  AGE+A
Sbjct: 4   QEYMELAISLAAATKGQTSPNPQVGAVVVKNGEILGMGAHLKAGTPHAEVHAIAAAGEKA 63

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           +GA  YVTLEPCSH+GR+PPCA  II  GI RV +   DP+  VSG+G++ +   GI +V
Sbjct: 64  KGADIYVTLEPCSHFGRTPPCADLIINSGINRVFIASADPNPLVSGKGIERMQDAGIEVV 123

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +++ E       +      K  ++T+K A S D         S  IT   S+  VH L
Sbjct: 124 TGLLKEEADALNEPFFHFIKTKTPYVTIKAASSFDGKTAAKTGDSKWITSPESRQDVHRL 183

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R + DAIL G+ T++ D+P LT RL      +P+R++LD + ++  D+ +I+   +  +I
Sbjct: 184 RHEHDAILTGVNTIIHDNPLLTARLPQG-GKNPIRVVLDTNLRIPADANVIRDQSVKTII 242

Query: 247 IVTENDDPVLALAFRKKNINI--IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
                 D   A   +K N  +     +   +K++L  L  R + +L VEGG+ +  SFIN
Sbjct: 243 FTGCEIDRSKAEELKKYNTEVFSFSANEVPIKEVLRNLGERNIMTLFVEGGSEIHASFIN 302

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGY-----LEKNFMCVRRDYFGSDVCL 352
           S     IILY +  +IG       +                   +  G D+ +
Sbjct: 303 SGFFQQIILYMAPKIIGGNKAIPFIGGDGANYVKDAPALEFTEIEKIGGDLRI 355


>gi|170767910|ref|ZP_02902363.1| riboflavin biosynthesis protein RibD [Escherichia albertii TW07627]
 gi|170123398|gb|EDS92329.1| riboflavin biosynthesis protein RibD [Escherichia albertii TW07627]
          Length = 361

 Score =  338 bits (867), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 126/362 (34%), Positives = 183/362 (50%), Gaps = 18/362 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  A E+A+GA
Sbjct: 1   MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGDGYHHRAGEPHAEVHALRMAEEKAKGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI +   +
Sbjct: 61  TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V  LRAQ
Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKIIK 238
           S AIL    TVLADDP LT R + L E             P+RI++D   +++ + +I++
Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQTLYPQENLRQPVRIVIDSQNRVTPEHRIVQ 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
                        +D        +  +   Y    DL  L+  L  + + S+ VE G  +
Sbjct: 241 QPGE--TWFARTQEDSRHWPETVRTLLIPEYNGHLDLVMLMMQLGKQQINSIWVEAGPTL 298

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           A + + + LVD +I+Y +  ++G           LE+      F      + G DVCL  
Sbjct: 299 AGALLLAGLVDELIVYIAPKLLGSEARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHL 358

Query: 355 IG 356
           +G
Sbjct: 359 VG 360


>gi|90424160|ref|YP_532530.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris
           BisB18]
 gi|90106174|gb|ABD88211.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Rhodopseudomonas palustris BisB18]
          Length = 383

 Score =  338 bits (867), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 148/364 (40%), Positives = 203/364 (55%), Gaps = 12/364 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D RFM  AL   R   G T+ NP+V  +IVKDG+++GRG T  GG PHAE++AL  AG
Sbjct: 19  AADLRFMQLALSLGRRGQGRTAPNPAVGAVIVKDGVIVGRGWTQPGGRPHAEIEALNRAG 78

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
             ARGAT YVTLEPCSH+G++PPCA  +I  G+ RVV  ++DP+ +V+G+G   L   GI
Sbjct: 79  LAARGATLYVTLEPCSHHGKTPPCADAVIAAGLARVVSAIEDPNPQVAGQGHARLRAAGI 138

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   +  +E       +  R  + R H+ LK+AVS D+ I         ITG  ++ +V
Sbjct: 139 RVDVGLGAAEAAHDHAGHFRRVRDGRPHVILKLAVSSDDKIAATPGQPTAITGEAARARV 198

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           HLLRAQ DAIL+GI T LADDP LTCRL G+++ SP+R++LD   +L  DS+++ +A   
Sbjct: 199 HLLRAQCDAILIGIRTALADDPLLTCRLPGMEKRSPVRVVLDRALRLPGDSRLVHSARST 258

Query: 244 PVIIVTENDDPVLALAFRKKNINII-------YCDCRDLKKLLTILVGRGVTSLLVEGGA 296
           P+ ++        A A        I            DL  +L  L G G+T LLVEGGA
Sbjct: 259 PLWLLASEIAEAAAAAKLGAAGAQIIHVADCDAMPGLDLPAVLQALAGNGITRLLVEGGA 318

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
            VA S + + LVD + L R  + IGEGG+ +    PL        F     +  G D   
Sbjct: 319 RVASSLVAADLVDEVWLLRGAMTIGEGGVAALDGLPLSVITAAAAFKIRTSETLGPDSLT 378

Query: 353 EYIG 356
            Y  
Sbjct: 379 IYER 382


>gi|222148205|ref|YP_002549162.1| bifunctional riboflavin deaminase-reductase [Agrobacterium vitis
           S4]
 gi|221735193|gb|ACM36156.1| bifunctional riboflavin deaminase-reductase [Agrobacterium vitis
           S4]
          Length = 366

 Score =  338 bits (867), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 180/362 (49%), Positives = 234/362 (64%), Gaps = 11/362 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D RFM+AA+R  R H+G T TNPSV C+IV DG ++G  VTA GG PHAE QA+  AG
Sbjct: 6   PDDQRFMAAAIRLGRSHLGQTLTNPSVGCVIVADGTIVGSAVTAIGGRPHAERQAIAVAG 65

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E+ARGATAYVTLEPCSH+G++PPCA  ++E G+ RVVV V DPD RVSGRGL  L+  GI
Sbjct: 66  EKARGATAYVTLEPCSHHGKTPPCADALVEAGVARVVVAVTDPDPRVSGRGLSILTDAGI 125

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +V  ++E E +  L AYLTRQ ++R H+TLK+A+S+D MIG AG G V ITG +++ QV
Sbjct: 126 EVVTGVLEREARYGLAAYLTRQTKQRPHVTLKLALSRDGMIGRAGEGQVAITGPLARTQV 185

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
            LLRA+SDAILVGIGT  ADDP+LT RL G    SP+RI+LD   +L + SK+++TA   
Sbjct: 186 QLLRAESDAILVGIGTAKADDPDLTVRLAGQTHLSPLRIVLDRRLELPIGSKLVQTAGHV 245

Query: 244 PVIIVTENDD--------PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
           P +                    A +   +++      DL  LL  L  +G++SLLVEGG
Sbjct: 246 PTVCACGEPSTFTCTESFEASRTALQAAGVDVW--PVADLDDLLRQLAVQGMSSLLVEGG 303

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           AA A +F+N+ LVD I LY+    IG  G+ SPL    + +NF  +R   FG+D   EY 
Sbjct: 304 AAAAKAFLNAGLVDRIHLYQGPDEIGGSGLASPLTPANIPENFRHLRSVNFGADRFDEYE 363

Query: 356 GK 357
             
Sbjct: 364 QD 365


>gi|229513912|ref|ZP_04403374.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae TMA 21]
 gi|229349093|gb|EEO14050.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae TMA 21]
          Length = 367

 Score =  338 bits (867), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 126/375 (33%), Positives = 185/375 (49%), Gaps = 29/375 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +AGE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+G+G+Q L
Sbjct: 61  MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++E + +     +L R       + LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLEEDARALNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R                   P+R+ILD  
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRG 286
            +L  +  + +T   +PV+ V   +  +   A   K          DL++LL  L     
Sbjct: 241 HQLHPELALYQTP--SPVLRVASENAELCISAENGK---------LDLRELLAQLAQQHN 289

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVR 342
           V  LLVE G+ +A S I  +LVD IILY +  ++G  G       G  E           
Sbjct: 290 VNQLLVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIED 349

Query: 343 RDYFGSDVCLEYIGK 357
               G+D+ +    K
Sbjct: 350 CRMVGADLRIIATPK 364


>gi|77165491|ref|YP_344016.1| riboflavin biosynthesis protein RibD [Nitrosococcus oceani ATCC
           19707]
 gi|254433444|ref|ZP_05046952.1| riboflavin biosynthesis protein RibD [Nitrosococcus oceani AFC27]
 gi|76883805|gb|ABA58486.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Nitrosococcus
           oceani ATCC 19707]
 gi|207089777|gb|EDZ67048.1| riboflavin biosynthesis protein RibD [Nitrosococcus oceani AFC27]
          Length = 365

 Score =  338 bits (867), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 117/364 (32%), Positives = 193/364 (53%), Gaps = 21/364 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ ++  +  T  NP V C++V+ G ++G G     G  HAE+ AL +AG  A+G+
Sbjct: 1   MARALKLAQRGLFTTDPNPRVGCVLVRGGEIVGEGWHQQAGDSHAEINALRQAGIRAQGS 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPC H GR+PPC + +IE G+ RVV  + DP  +V+ +GL  L + G+ +   +
Sbjct: 61  TCYVTLEPCCHRGRTPPCTEALIEAGVVRVVAAMGDPHPKVASQGLAQLREAGLQVEHGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           ++ E +     ++ R V+ R  +  K+A+S D    +A   S  IT   ++  V   RA+
Sbjct: 121 LQEEAQALNVGFVQRLVQGRPWVRCKLAMSLDGATALASGESRWITASPARRDVQRWRAR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE-------HSPMRIILDPHFKLSLDSKIIKTALL 242
           S AIL GIGTV+ DDP L  R   LQ+         P+R++LD    +   ++++  +L 
Sbjct: 181 SSAILTGIGTVVRDDPSLNVRYEELQDEVPPGFSRQPLRVVLDRRLAIMAQARLL--SLR 238

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAV 298
            PV+IV  +     A + R + + +I         DL  L+ +L  R +  L VE GA +
Sbjct: 239 GPVMIVCADATSPKAESLRGRGVEVISLPVTPQGLDLMALMAVLAAREINELHVECGARL 298

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-LEYIGK 357
           A S + + L+D ++LY +  ++GE  +      G L+   +   RD    D+  +  +G+
Sbjct: 299 AGSLLQAGLMDELVLYIAPKLMGEAAL------GLLQLPGIQTMRDCIEVDIKEMRAVGQ 352

Query: 358 NLCL 361
           +  L
Sbjct: 353 DWRL 356


>gi|327479375|gb|AEA82685.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri DSM
           4166]
          Length = 366

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 121/359 (33%), Positives = 179/359 (49%), Gaps = 17/359 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D  +M+ AL+ +R  +  T  NP V C+IV DG ++G G     G PHAEV AL +AG
Sbjct: 2   TTDHAWMARALQLARKGLYSTHPNPRVGCVIVADGELVGEGWHVRAGEPHAEVHALRQAG 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGATAYVTLEPCSHYGR+PPCA+ +++ G+ RVV  + DP+ +V+G GL+ L   GI
Sbjct: 62  ERARGATAYVTLEPCSHYGRTPPCAEALVKAGVGRVVAAMQDPNPQVAGNGLERLRSAGI 121

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++E E +     +  R      ++  K+A+S D    MA   S  ITG  ++ +V
Sbjct: 122 EVASGVLEGEARELNAGFTKRMESGLPYVRAKLAMSLDGRTAMASGESQWITGPAARAEV 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLD 233
             LRA+S  +L G  TVL D   LT R   L           +  P+R+++D   ++ LD
Sbjct: 182 QRLRARSSVVLTGADTVLMDAARLTVRGAELGLDAETTALALQRPPLRVLVDGRLRVPLD 241

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
           +   +     P ++VT                 ++  +  DL  LL  L  RG   +LVE
Sbjct: 242 APFFQ---AGPALVVTVVAGCEETYRRAGHEALVLGQERVDLTSLLRELAARGANEVLVE 298

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +  +F +  L+D   L+ +   +G    P    PLE     +    V     G D
Sbjct: 299 AGPRLVGAFASLGLIDEYQLFMAAKFLGSSARPLLELPLERMSEARELKIVDIRAVGDD 357


>gi|270263547|ref|ZP_06191816.1| hypothetical protein SOD_e01710 [Serratia odorifera 4Rx13]
 gi|270042431|gb|EFA15526.1| hypothetical protein SOD_e01710 [Serratia odorifera 4Rx13]
          Length = 369

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 182/367 (49%), Gaps = 18/367 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A   +R     T+ NP+V C+IV+DG ++G G     G PHAEV AL  AG  
Sbjct: 4   DEFYMARAFELARLGRFTTAPNPNVGCVIVRDGEIVGEGYHLRAGEPHAEVHALRMAGAR 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q GI +
Sbjct: 64  ARGATAYVTLEPCSHHGRTPPCADALVAAGVARVVAAMQDPNPEVAGRGLYKLQQAGIDV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M S+ +     +L R      ++ LK+  S D    MA   S  IT   ++  V  
Sbjct: 124 RHGLMLSDAEAVNPGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
           LRAQS AIL    TVLADDP LT R + L               P+RIILD   +++   
Sbjct: 184 LRAQSAAILSTSATVLADDPSLTVRWDELDTATQSLYPRENLRQPLRIILDSQNRVTPQH 243

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           ++++        +     D        ++     +    DL  ++  L  R V S+ VE 
Sbjct: 244 RVVQQP--GTTWLARLQPDDQNWPQEVEQLTFPAHGGGVDLVVMMMQLAKRQVNSIWVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           GAA++ + + + LVD +ILY +  ++G+ G        LE       F+       G D+
Sbjct: 302 GAALSGALLQAGLVDELILYIAPKLMGDNGRGLCRLPGLENLADAPEFVFSEVRQIGPDL 361

Query: 351 CLEYIGK 357
            L    K
Sbjct: 362 RLRLKPK 368


>gi|257467357|ref|ZP_05631668.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315918487|ref|ZP_07914727.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|313692362|gb|EFS29197.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 359

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 110/359 (30%), Positives = 182/359 (50%), Gaps = 11/359 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  ++   G  + NP V  ++VK+G +IG+G     G PHAEV AL+EAGEE
Sbjct: 3   DLEYMHLALELAKHGEGRVNPNPLVGAVVVKNGKIIGKGYHHEYGGPHAEVFALQEAGEE 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSHYG++PPCA+ II+ GI+R V+ + DP+  V G+G+  +   GI +
Sbjct: 63  AKGATIYVTLEPCSHYGKTPPCAKKIIDSGIKRCVISMGDPNPLVGGKGISMMRDAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              + E+E +     +L     K   + LK  ++ D  +      S  IT  I++ +V  
Sbjct: 123 EIGLCETEARALNRVFLKYISTKLPFLFLKCGITLDGKLATRDFQSKWITNEIAREKVQQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR +   I+VG+ TV+ D+P L  R+       P RII+DP+ ++ L SK++       V
Sbjct: 183 LRNKYTGIMVGVHTVIEDNPSLDARIE--NGRDPYRIIVDPYLEIPLSSKLLHRHDKKTV 240

Query: 246 IIVT-ENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           II +    +              I+ + R     ++L  +   G+ S+L+EGG  +  S 
Sbjct: 241 IITSFLEKETQKKKELDDLETRFIFLEDRIFSWPQMLIEIGKLGIDSVLLEGGGQLISSA 300

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356
               ++D   ++ +  ++G+    + +     E          V    +G++  +E+  
Sbjct: 301 FREDVIDGGEIFIAPKILGDKEAVAFVSGFSKESMDEAITLPNVELHQYGNNCSMEFYR 359


>gi|209884995|ref|YP_002288852.1| riboflavin biosynthesis protein RibD [Oligotropha carboxidovorans
           OM5]
 gi|209873191|gb|ACI92987.1| riboflavin biosynthesis protein RibD [Oligotropha carboxidovorans
           OM5]
          Length = 380

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 152/358 (42%), Positives = 200/358 (55%), Gaps = 12/358 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM  AL   R   G T  NP+V  ++VKDG+++GRG T  GG PHAE QAL+ AGE 
Sbjct: 15  DHRFMQLALALGRRGQGATWPNPAVGAVVVKDGVILGRGWTQPGGRPHAEPQALQRAGEA 74

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGAT YVTLEPCSHYG+SPPC   II  GI RVV  ++DP+ +V+G+G   L   GI +
Sbjct: 75  ARGATLYVTLEPCSHYGKSPPCVDAIIVSGIARVVSAIEDPNPQVAGQGHVRLRDAGITV 134

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +   E       +  R  E R H+TLK+AVS D  I  AG   V ITG  +  +VHL
Sbjct: 135 DVGLCRDEAAQAHSGHFLRVREGRPHVTLKLAVSADGKIAAAGGKPVRITGEAANARVHL 194

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRA+SDAIL+GIGT LADDP LTCRL G++  SP+R++LD   +L   S+++ +A   P+
Sbjct: 195 LRAESDAILIGIGTALADDPLLTCRLPGMEHRSPVRVVLDRALRLPGASRLVHSARQTPL 254

Query: 246 IIVTENDDPVLALAFRKKNINIIY-------CDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
            I+        A A        ++           DL  +L  L  + +T LLVEGGA V
Sbjct: 255 WIIAAETAEAAAAARLGVAGAHLFRLPVEDRAAGLDLNAVLRTLSEQDITRLLVEGGAKV 314

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
           A SF+ +RLVD   L +    IG+ G+P+     L+       +        G D   
Sbjct: 315 ASSFLAARLVDEFWLLQGAKSIGDDGLPALEGQDLDAVTASSGWRIDATQMLGDDRLT 372


>gi|57234067|ref|YP_181903.1| riboflavin biosynthesis protein RibD [Dehalococcoides ethenogenes
           195]
 gi|57224515|gb|AAW39572.1| riboflavin biosynthesis protein RibD [Dehalococcoides ethenogenes
           195]
          Length = 365

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 125/358 (34%), Positives = 181/358 (50%), Gaps = 15/358 (4%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           ++MS AL  ++  +G  S NP+V  +IVK+G V+G+G T   G  HAE+ AL++A E+A+
Sbjct: 2   KYMSQALSLAKLAIGQVSPNPAVGAVIVKNGEVVGQGFTQPPGGDHAEIVALKQAAEKAK 61

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127
           GA  YVTLEPC H GR+PPC   IIE GI+ V +   D +  VSG+G + L   GI V  
Sbjct: 62  GAALYVTLEPCCHQGRTPPCTVAIIESGIKEVYIATLDDNPLVSGKGKKELEDAGIKVHL 121

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            MME E +    AY          +T K A+S D   G     S  I+   S++  H +R
Sbjct: 122 GMMEREARQMNEAYFKYITTGMPFVTAKYAMSLDGKTGTRTGDSKWISNEESRHFAHYIR 181

Query: 188 AQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
             SD I+ G+ T+L DDP LT R+N    G     P R+I+D + +  L S +       
Sbjct: 182 HISDVIMAGLNTILKDDPHLTARVNCGRGGTSHCQPTRVIIDDNGRAPLSSNVFHVPGN- 240

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVA 299
            ++ V +   P    A+ +    ++         DLK LL  L   GVTS+LVEGG  V 
Sbjct: 241 TIVAVAKGLTPEEKQAYDEVGAKVVEMPDERGLVDLKSLLRYLGQNGVTSVLVEGGGIVL 300

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCL 352
            S  + +LVD ++++ + I+IG      P+     E          +    FG DV +
Sbjct: 301 GSLFDLKLVDKVLVFVAPIIIGGKDAKIPVAGLGAELITDSAKLRDITTTAFGQDVLI 358


>gi|298488889|ref|ZP_07006913.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298156564|gb|EFH97660.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 366

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 127/356 (35%), Positives = 181/356 (50%), Gaps = 20/356 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL  +R  +  T  NP V C+IV+DG ++G G     G PHAEV AL +AGE ARGA
Sbjct: 1   MARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQAGELARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPCSH GR+PPCA  ++  G+ RVV  + DP+  VSGRGL  L   GI +   +
Sbjct: 61  TAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPDVSGRGLLRLMNAGIGVQCGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +ESE +     +L R    + +I +K+A+S D    MA   S  ITG  +++ V  LRAQ
Sbjct: 121 LESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARSAVQRLRAQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSLDSKIIKT 239
           S  +L G  TVLAD   LT R + L              P+R+++D   ++ LD+   + 
Sbjct: 181 SSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLRVPLDAPFFQA 240

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVTSLLVEGGA 296
                 ++VT            + +  +   D     DL+KL+  L  RGV  +LVE G 
Sbjct: 241 GSA---LVVTCAAASARGRYQEEGHEMLALADSAGHVDLRKLMGELATRGVNEVLVEAGP 297

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSD 349
            +A +F    LVD   ++ +   +G    P    PL +         V+    G+D
Sbjct: 298 RLAGAFARLGLVDEFQIFIAGKFLGSSARPLLDLPLAQMSEALELNIVQMRAVGND 353


>gi|260466843|ref|ZP_05813027.1| riboflavin biosynthesis protein RibD [Mesorhizobium opportunistum
           WSM2075]
 gi|259029345|gb|EEW30637.1| riboflavin biosynthesis protein RibD [Mesorhizobium opportunistum
           WSM2075]
          Length = 376

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 165/365 (45%), Positives = 227/365 (62%), Gaps = 10/365 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQ 58
            ++ D RFM+AALR SR + G TSTNPSV  LIV+D     +++G GVTA GG PHAE +
Sbjct: 11  QAALDHRFMAAALRLSRRNAGRTSTNPSVGTLIVRDDGAGPMIVGTGVTAVGGRPHAETE 70

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           AL EAGE ARGATAYVTLEPC+H+GR+PPCA  ++  G+ RVV    DPD RVSG+G   
Sbjct: 71  ALAEAGELARGATAYVTLEPCAHHGRTPPCANALVNAGVARVVGASSDPDPRVSGKGYAI 130

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L   GI +V++++ ++    +  YL R ++KR  + LK+A+S D  IG  G G V ITG 
Sbjct: 131 LRAAGIEVVEKVLAAQAAEQMAGYLIRSLKKRPEVILKLALSSDGKIGREGAGQVAITGD 190

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
           +++ +V+L+RA++DAILVGIGT L DDP LT RL GL+  SP RI+LD   +L   SK++
Sbjct: 191 MARREVYLMRAEADAILVGIGTALEDDPALTVRLPGLENRSPARIVLDRQIRLPEASKLV 250

Query: 238 KTALLAPVIIVTE-NDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLV 292
                 P+ +      DP    A  +  +  I  +  +    L +LL  L   G+ S+LV
Sbjct: 251 SGVDRVPLYVAACLQADPQRRAALERAGVRFIGTETHEGGVALPELLEDLAALGMASVLV 310

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           EGGA VA +F+   LVD I+L++    IGEGGI SP++  ++   F  +R   FG D   
Sbjct: 311 EGGARVASAFLADGLVDRIVLFQGPEAIGEGGIASPIDGDHIPAGFRKLREMRFGEDGYA 370

Query: 353 EYIGK 357
           E+I  
Sbjct: 371 EWIRD 375


>gi|58578775|ref|YP_196987.1| riboflavin biosynthesis protein ribD [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417401|emb|CAI26605.1| Riboflavin biosynthesis protein ribD [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 370

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 135/355 (38%), Positives = 203/355 (57%), Gaps = 9/355 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++  D +FMS ALR +R  +G    NP+V C+IV DG+V+GRG T  GG PHAE+ AL+ 
Sbjct: 6   MTYCDKKFMSLALRLARRGLGNVFPNPAVGCIIVNDGVVVGRGWTQVGGRPHAEIVALDN 65

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
               A+GATAYVTLEPCSHYG++ PC   +I  GI+RVV+  +DPD+RVSG G++ L   
Sbjct: 66  VKHLAKGATAYVTLEPCSHYGKTGPCVLNLINAGIKRVVIATNDPDMRVSGNGIKLLRDA 125

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
            + +   +M++E +     +   +++ R  IT+KIA + D  I +    S  IT  +++ 
Sbjct: 126 NVEVRCGVMDNEARALNIGFFYSKIKNRPFITVKIASTLDGKIALNSGESKWITSELTRT 185

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH  R+  DA++VG  T++ D+P L  R+ GL+ +SP+RI++D + K+S    IIKTA 
Sbjct: 186 WVHKQRSMYDAVMVGSNTIMQDNPMLNTRIPGLECYSPVRIVIDRYGKVSNYHNIIKTAD 245

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAH 300
           + P  I+T   + +        N   I  +   L + + +LV + G+T L VEGG+ +  
Sbjct: 246 VIPTYILT---NSIEETKLGAANYLCIDSEDNFLSESMKVLVKKVGITRLFVEGGSILIT 302

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVC 351
             + + LVD II  RS  + G   IP+     + E     NF  V   YF  DV 
Sbjct: 303 ELLKNNLVDQIIWCRSNKIFGNDSIPAIGGLNIRELQSSYNFKRVDTLYFDGDVV 357


>gi|57238845|ref|YP_179981.1| riboflavin biosynthesis protein ribD [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57160924|emb|CAH57829.1| riboflavin biosynthesis protein RibD [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 365

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 135/355 (38%), Positives = 203/355 (57%), Gaps = 9/355 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++  D +FMS ALR +R  +G    NP+V C+IV DG+V+GRG T  GG PHAE+ AL+ 
Sbjct: 1   MTYCDKKFMSLALRLARRGLGNVFPNPAVGCIIVNDGVVVGRGWTQVGGRPHAEIVALDN 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
               A+GATAYVTLEPCSHYG++ PC   +I  GI+RVV+  +DPD+RVSG G++ L   
Sbjct: 61  VKHLAKGATAYVTLEPCSHYGKTGPCVLNLINAGIKRVVIATNDPDMRVSGNGIKLLRDA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
            + +   +M++E +     +   +++ R  IT+KIA + D  I +    S  IT  +++ 
Sbjct: 121 NVEVRCGVMDNEARALNIGFFYSKIKNRPFITVKIASTLDGKIALNSGESKWITSELTRT 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH  R+  DA++VG  T++ D+P L  R+ GL+ +SP+RI++D + K+S    IIKTA 
Sbjct: 181 WVHKQRSMYDAVMVGSNTIMQDNPMLNTRIPGLECYSPVRIVIDRYGKVSNYHNIIKTAD 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAH 300
           + P  I+T   + +        N   I  +   L + + +LV + G+T L VEGG+ +  
Sbjct: 241 VIPTYILT---NSIEETKLGAANYLCIDSEDNFLSESMKVLVKKVGITRLFVEGGSILIT 297

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVC 351
             + + LVD II  RS  + G   IP+     + E     NF  V   YF  DV 
Sbjct: 298 ELLKNNLVDQIIWCRSNKIFGNDSIPAIGGLNIRELQSSYNFKRVDTLYFDGDVV 352


>gi|53804252|ref|YP_114101.1| riboflavin biosynthesis protein RibD [Methylococcus capsulatus str.
           Bath]
 gi|53758013|gb|AAU92304.1| riboflavin biosynthesis protein RibD [Methylococcus capsulatus str.
           Bath]
          Length = 378

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 115/366 (31%), Positives = 180/366 (49%), Gaps = 13/366 (3%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             S  D  FM+ ALR +   +  T  NP V  ++V+   V+G G     G PHAE+ AL 
Sbjct: 13  SWSPEDHCFMAHALRLAEKGMYTTDPNPRVGSVVVQGNEVVGAGWHQRAGGPHAEIAALR 72

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +A   A GAT YVTLEPCSH+GR+PPCA  +IE G+ RVV  + DP+ RV+G+GL+ L +
Sbjct: 73  DARGRAAGATVYVTLEPCSHHGRTPPCADALIEAGVHRVVAAMQDPNPRVAGQGLERLRR 132

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +   ++  E +     ++ R       +  K+A+S D    +A   S  ITG  ++
Sbjct: 133 AGIEVSCGLLAREAERLNQGFVKRMRLGLPFVRSKLAMSLDGRTALASGDSKWITGDAAR 192

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKT 239
             VH LRA+S  I+ GIGT+ ADDP LT R N   E   P R+ILD   +   ++++ + 
Sbjct: 193 RDVHRLRARSSVIVTGIGTLRADDPFLTARPNDATELEQPARVILDSRLRSPPNARVFQQ 252

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEG 294
                 +++T   DP    A       ++  +       D+  ++ +L       +L E 
Sbjct: 253 P--GRTLVLTTASDPRARQALLDVGAEVLEVEPDGAGRPDVAAVVRLLGRLEFNEVLFEA 310

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDV 350
           GA++  + +++ +VD  ++Y +  V+G+          L           V     GSD+
Sbjct: 311 GASLNGALLSAGVVDEWVVYLAPCVLGDEARGLFRLPGLAGMADRPELAIVDARRVGSDM 370

Query: 351 CLEYIG 356
            L    
Sbjct: 371 RLILRS 376


>gi|153826812|ref|ZP_01979479.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MZO-2]
 gi|149739399|gb|EDM53641.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MZO-2]
          Length = 367

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 126/375 (33%), Positives = 188/375 (50%), Gaps = 29/375 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +AGE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+G+G+Q L
Sbjct: 61  MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++E++ +     +L R       + LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R + L               P+R+ILD  
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-G 286
            +L  +  + +T   +PV+ V   +  +   A   K          DL++LL  L  +  
Sbjct: 241 HQLHPELALYQTP--SPVLRVASENAELCISAENGK---------LDLRELLAQLAQKHN 289

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVR 342
           V  L VE G+ +A S I  +LVD IILY +  ++G  G       G  E           
Sbjct: 290 VNQLWVEAGSQLAKSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIED 349

Query: 343 RDYFGSDVCLEYIGK 357
               G+D+ +    K
Sbjct: 350 CRMVGADLRIIATPK 364


>gi|302189350|ref|ZP_07266023.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           syringae 642]
          Length = 378

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 128/364 (35%), Positives = 186/364 (51%), Gaps = 20/364 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            ++ D  +M+ A+  +R  +  T  NP V C+IV++G ++G G  A  G PHAEV AL +
Sbjct: 5   QAALDVHYMARAIELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQ 64

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH GR+PPCA  +IE G+ RVV  + DP+  VSGRGL  L   
Sbjct: 65  AGELARGATAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNA 124

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++ESE +     +L R      ++ +K+A+S D    MA   S  ITG  +++
Sbjct: 125 GIGVQCGVLESESRALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARS 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRAQS  +L G  TVLAD   LT R + L             +P+R+++D   ++ 
Sbjct: 185 AVQRLRAQSSVVLSGADTVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLRVP 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVT 288
           LD+   +       ++VT            + +  +   D     DL++L+  L  RGV 
Sbjct: 245 LDAPFFQAGSA---LVVTCAAASARGRYQEEGHEMLALADSAGHVDLRRLMGELAARGVN 301

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345
            +LVE G  +A +F    LVD   L+ +   +G    P    PL +         V    
Sbjct: 302 EVLVEAGPRLAGAFARLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIVEMRA 361

Query: 346 FGSD 349
            G+D
Sbjct: 362 VGND 365


>gi|58616834|ref|YP_196033.1| riboflavin biosynthesis protein ribD [Ehrlichia ruminantium str.
           Gardel]
 gi|58416446|emb|CAI27559.1| Riboflavin biosynthesis protein ribD [Ehrlichia ruminantium str.
           Gardel]
          Length = 370

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 135/355 (38%), Positives = 204/355 (57%), Gaps = 9/355 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++  D +FMS ALR +R  +G    NP+V C+IV DG+V+GRG T  GG PHAE+ AL+ 
Sbjct: 6   MTYCDKKFMSLALRLARRGLGNVFPNPAVGCIIVNDGVVVGRGWTQVGGRPHAEIVALDN 65

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
               A+GATAYVTLEPCSHYG++ PC   +I  GI+RVV+ ++DPD+RVSG G++ L   
Sbjct: 66  VKHLAKGATAYVTLEPCSHYGKTGPCVLNLINAGIKRVVIAINDPDMRVSGNGIKLLRDA 125

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
            + +   +M++E +     +   +++ R  IT+KIA + D  I +    S  IT  +++ 
Sbjct: 126 NVEVRCGVMDNEARALNIGFFYSKIKNRPFITVKIASTLDGKIALNSGESKWITSELTRT 185

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH  R+  DA++VG  T++ D+P L  R+ GL+ +SP+RI++D + K+S    IIKTA 
Sbjct: 186 WVHKQRSMYDAVMVGSNTIMQDNPMLNTRIPGLECYSPVRIVIDRYGKVSNYHNIIKTAD 245

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAH 300
           + P  I+T   + +        N   I  +   L + + +LV + G+T L VEGG+ +  
Sbjct: 246 VIPTYILT---NSIKETKLGAANYLCIDSEDNFLSESMKVLVKKVGITRLFVEGGSILIT 302

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVC 351
             + + LVD II  RS  + G   IP+     + E     NF  V   YF  DV 
Sbjct: 303 ELLKNNLVDQIIWCRSNKIFGNDSIPAIGGLNIRELQCSYNFKRVDTLYFDGDVV 357


>gi|238897276|ref|YP_002922953.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
           reductase (C-terminal) [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229465031|gb|ACQ66805.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
           reductase (C-terminal) [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 392

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 125/372 (33%), Positives = 185/372 (49%), Gaps = 21/372 (5%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +MS ALR +      T+ NP+V C++V+ G V+G G     G PHAE+ AL++AG 
Sbjct: 13  QDEFYMSYALRLASLGRFTTTPNPNVGCVLVRHGQVVGEGYHLRLGEPHAEIHALQKAGR 72

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            A+G+ AY+TLEPC HYG++PPC + +I+ G+RRVVV ++DP+  ++GRGL  L Q GI 
Sbjct: 73  LAKGSVAYITLEPCCHYGKTPPCVEALIKAGVRRVVVAIEDPNPEIAGRGLYQLKQAGIE 132

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   ++ +E +     +L R      +I LK+A S D    MA   S  IT   S+  V 
Sbjct: 133 VTSGILSTEAQDLNPGFLKRMRTGLPYIQLKMACSLDGRTAMASGESQWITSEQSRQDVQ 192

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
             RAQS AIL    TV AD+P LT R   L +             P+RIILD H K++  
Sbjct: 193 FFRAQSSAILSTGVTVSADNPALTVRWESLPKKTQALYPQESLRQPVRIILDRHHKVTPQ 252

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTS 289
            ++++       +I T+ D         +   + I    +    DL  L+T L  R +  
Sbjct: 253 HQVVQQPGTC-WLIRTKTDHQDWPNQVEQWIFSSIQWPDKKNAIDLGSLMTALAKREMNL 311

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDY 345
           + VE GA +A   + + LVD +ILY +  ++G           L E      F+      
Sbjct: 312 IWVEAGAELAGGLLEAGLVDELILYMAPKLLGNTARGLCQLPGLNELAKAPEFVLQEVKQ 371

Query: 346 FGSDVCLEYIGK 357
            G D+ L     
Sbjct: 372 MGPDLRLRLKPD 383


>gi|117923484|ref|YP_864101.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Magnetococcus sp. MC-1]
 gi|117607240|gb|ABK42695.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Magnetococcus sp. MC-1]
          Length = 376

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 142/365 (38%), Positives = 195/365 (53%), Gaps = 15/365 (4%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P +  D  +M  ALR +   +G T  NP+V C+IVK+  +IGRG     G PHAEV+AL 
Sbjct: 4   PDAGKDRAYMDHALRLAARGLGRTRPNPTVGCVIVKEDRIIGRGWHRKAGGPHAEVEALR 63

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AGE ARGATAYVTLEPCSH+GR+PPC + +I+ GIRRVV  ++DP+  VSG+G Q L Q
Sbjct: 64  MAGEAARGATAYVTLEPCSHHGRTPPCCEGLIKAGIRRVVAAMEDPNPLVSGQGFQRLKQ 123

Query: 122 KGIIVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            G++V   +  E    L   ++TR +  R  +TLK A S D         S  ITG  ++
Sbjct: 124 AGVVVQVGVREEAAQMLIRPFITRILHNRPMVTLKSAASLDGKTATRERHSQWITGEAAR 183

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            + H LR   D IL GI TVLADDP LTCRL G     P+R+++D   KLS ++ +I   
Sbjct: 184 KRGHRLRDTHDVILTGIQTVLADDPRLTCRLKG--GRDPIRVVVDSSLKLSENAGVINPD 241

Query: 241 LLAPVIIVTENDDPVLALAFRK--KNINIIYC-----DCRDLKKLLTILVGRGVTSLLVE 293
             APV + T    P    A       + +I C        DL  L+  L  R +TS+L E
Sbjct: 242 STAPVWVATTLRAPEEKRALFALLPGVEVIMCAEDDTGRVDLYDLMEKLAKREITSVLAE 301

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGS 348
            G  ++ + ++ RLVD I L+ + ++IG       L+     K         V       
Sbjct: 302 AGGVLSGALLDKRLVDRIALFMAPMLIGGREASGILDSLGAAKLTEAPRLDHVTLTSLDG 361

Query: 349 DVCLE 353
           D+ +E
Sbjct: 362 DLLVE 366


>gi|153803015|ref|ZP_01957601.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MZO-3]
 gi|124121458|gb|EAY40201.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MZO-3]
          Length = 367

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 125/375 (33%), Positives = 187/375 (49%), Gaps = 29/375 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +AGE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+G+G+Q L
Sbjct: 61  MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++E++ +     +L R       + LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPFVQLKMAASLDGQTALANGQSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-----------EHSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R + L               P+R+ILD  
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPLSVQAQYAEADLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRG 286
            +L  +  + +T   +PV+ V   +  +   A   K          DL++LL  L     
Sbjct: 241 HQLHPELALYQTP--SPVLRVASENAELCISAKNGK---------LDLRELLAQLAQQHN 289

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVR 342
           V  + VE G+ +A S I  +LVD IILY +  ++G  G       G  E           
Sbjct: 290 VNQVWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIED 349

Query: 343 RDYFGSDVCLEYIGK 357
               G+D+ +    K
Sbjct: 350 CRMVGADLRIIATPK 364


>gi|269792620|ref|YP_003317524.1| riboflavin biosynthesis protein RibD [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100255|gb|ACZ19242.1| riboflavin biosynthesis protein RibD [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 377

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 138/354 (38%), Positives = 193/354 (54%), Gaps = 14/354 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
            FM  AL  +       S NP V C+IVKDG V+G G     G PHAEV+AL  AG+ A+
Sbjct: 20  YFMRMALSLAIRGGTAVSPNPKVGCVIVKDGQVVGWGYHKRYGGPHAEVEALTMAGDRAQ 79

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           GATAYVTLEPCSH+G++PPCA  ++E GIRRVV  + DP+ +V+GRGL+ L+  G+ V  
Sbjct: 80  GATAYVTLEPCSHHGKTPPCAPRLVEAGIRRVVYGMMDPNPKVNGRGLEILASGGVEVVG 139

Query: 129 -MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            +ME   +     ++ R    R  +TLK A+S D    +    S  ITG +++ + HLLR
Sbjct: 140 PVMEDRCRWENRGFIRRMTLGRPWVTLKGALSVDGTTCLENGKSKWITGPLARQKAHLLR 199

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           A+ DAILVGI TV+ DDP L  R   +   SP ++ILD   ++ LD+K +K       I+
Sbjct: 200 AEHDAILVGINTVINDDPALNVR--SVDGDSPKKVILDGGLRVPLDAKALKDGER---IV 254

Query: 248 VTENDDPV-LALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            T  D P     A R   + +     +    DL  +L+ L G GV SLLVEGG  V  +F
Sbjct: 255 FTSTDAPKDRVEALRDMGVQVCPVPSQGGLLDLASVLSALGGMGVNSLLVEGGPRVLGAF 314

Query: 303 INSRLVDSIILYRSQIVIGEGGI---PSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           ++  L D + L+ S  ++G G        +E      +         G+D+ LE
Sbjct: 315 VDRCLGDMVSLFISPSILGRGLQLCESFEIEGMENRVHIRDHSIRRAGNDIWLE 368


>gi|150396042|ref|YP_001326509.1| riboflavin biosynthesis protein RibD [Sinorhizobium medicae WSM419]
 gi|150027557|gb|ABR59674.1| riboflavin biosynthesis protein RibD [Sinorhizobium medicae WSM419]
          Length = 398

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 173/390 (44%), Positives = 238/390 (61%), Gaps = 39/390 (10%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM+AALR SR ++G T TNPSV C+IV +G+++GR VTA GG PHAE QAL EAGE+
Sbjct: 8   DERFMAAALRLSRRNLGRTGTNPSVGCVIVNEGMIVGRAVTASGGRPHAETQALAEAGEK 67

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSH+G++PPC   +I  G+ RVVV + DPD RV+GRG+  L + GI +
Sbjct: 68  ARGATAYVTLEPCSHHGKTPPCTDALIASGVARVVVAILDPDERVAGRGIVLLREAGIAV 127

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++  EG+  L AYL RQ +KR H+TLK+AVS D MIG  G G V ITG +S+ QV +
Sbjct: 128 DIGVLREEGERALQAYLMRQCKKRPHVTLKLAVSNDGMIGRRGEGQVRITGAVSRAQVQI 187

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRA++DAILVGIGT  ADDPELT R+ GL++ SP+RI+LD   +L ++SK++++A    +
Sbjct: 188 LRAETDAILVGIGTASADDPELTVRMQGLEDRSPVRIVLDRRLELPIESKLVRSAGEVSL 247

Query: 246 IIVTEND-DPVLALAFRKKN-------------------------------------INI 267
           I+V  +   P   +    +                                        +
Sbjct: 248 IVVAGDAGSPSPRMRVEGERRADEGQVSGVSLPLTPTLSPVAGRGGDYEARRDVLVSAGV 307

Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
              +  ++  LL  L  RG++SLLVEGG++ A +F++  LVD I+L+     IG+GGIPS
Sbjct: 308 EILNADNIPDLLAALASRGISSLLVEGGSSAARAFLDVELVDRILLFTGPSPIGKGGIPS 367

Query: 328 PLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           P +   +   F   R   +G D+  EY   
Sbjct: 368 PFQRRSVPAGFTLQRTARYGDDIFEEYERD 397


>gi|297580914|ref|ZP_06942839.1| riboflavin biosynthesis protein RibD [Vibrio cholerae RC385]
 gi|297534740|gb|EFH73576.1| riboflavin biosynthesis protein RibD [Vibrio cholerae RC385]
          Length = 367

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 126/375 (33%), Positives = 188/375 (50%), Gaps = 29/375 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +AGE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+G+G+Q L
Sbjct: 61  MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++E++ +     +L R      ++ LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R + L               P+R+ILD  
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRG 286
            +L  +  + +T   +PV+ V   +  +   A   K          DL++LL  L     
Sbjct: 241 HQLHPELALYQTP--SPVLRVASENAELCISAEHGK---------LDLRELLAQLAQQHN 289

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVR 342
           V  L VE G+ +A S I  +LVD IILY +  ++G  G       G  E           
Sbjct: 290 VNQLWVEAGSQLAKSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIED 349

Query: 343 RDYFGSDVCLEYIGK 357
               G+D+ +    K
Sbjct: 350 CRMVGADLRIIATPK 364


>gi|226939661|ref|YP_002794734.1| RibD [Laribacter hongkongensis HLHK9]
 gi|226714587|gb|ACO73725.1| RibD [Laribacter hongkongensis HLHK9]
          Length = 383

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 125/379 (32%), Positives = 184/379 (48%), Gaps = 28/379 (7%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S+ D R+M+ AL+ +R  +  T+ NP V C++V DG V G G     G PHAE  AL  
Sbjct: 2   FSADDHRYMARALQLARLGMTSTAPNPRVGCVVVSDGQVAGEGWHVRAGTPHAERHALAM 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH+GR+PPCA  +++ G+ RVV  + DP+  V+G+G+  L+  
Sbjct: 62  AGERARGATAYVTLEPCSHFGRTPPCADALLQAGVGRVVAAMVDPNPLVAGQGMTRLAAA 121

Query: 123 GIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI     ++E+E       +++R    R  +T+K+ +S D    +A   S  ITG  ++ 
Sbjct: 122 GIECASGLLEAEACELNRGFVSRMTRGRPWLTVKLGISLDGKTALADGQSQWITGAQARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR-------------------LNGLQEHSPMRI 222
            V   RA  D IL G GTV AD+P+LT R                           P+R+
Sbjct: 182 DVMRQRACHDVILTGSGTVRADNPQLTVRNLVPDVLPPALQDTPAGRLQAAAPVRQPLRV 241

Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTI 281
           I+D    L  D+ I      APV + T    P          +++   D R DL  LL  
Sbjct: 242 IVDGAGTLDPDAAIF---CGAPVRMYTAATTPATGRLHGHTVVSLPGADGRVDLAALLAD 298

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKN 337
           L   GV  +  E G  +A + +++ LVD ++ Y + +V+G          PL     +  
Sbjct: 299 LGRLGVNDVWCEAGMGLAGALLHAGLVDELVCYMAPVVLGHSARGMFDLPPLAALADKSC 358

Query: 338 FMCVRRDYFGSDVCLEYIG 356
           +        G+D+ L    
Sbjct: 359 WRWHDVRSVGNDLRLTLRP 377


>gi|159903849|ref|YP_001551193.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. MIT 9211]
 gi|159889025|gb|ABX09239.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. MIT 9211]
          Length = 365

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 117/355 (32%), Positives = 194/355 (54%), Gaps = 9/355 (2%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            +M  A + ++   G T+ NP V  +++  D ++IG G  +  G PHAEV+AL +AG+ A
Sbjct: 13  YWMQRAFQLAQLADGETNPNPLVGAVVLDPDKLLIGEGFHSKAGSPHAEVEALRQAGDAA 72

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           +G T  VTLEPC HYG +PPC + IIE G+ RVVV + DPD RVSG G++ L + GI ++
Sbjct: 73  KGGTLLVTLEPCCHYGLTPPCTKTIIESGVSRVVVGLQDPDPRVSGNGIRLLKEAGIEVI 132

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +++ E      A++ R    R    LK+A+S D   G++   S  IT   ++ +VH L
Sbjct: 133 TGILKEEISFQNRAFIFRIKTGRPWGILKLAMSFDGRTGLSNGKSKWITSQEAREKVHAL 192

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA+ DA+++G GT+ ADDP LT R  GL+   P+R++      L + ++I +T   A  +
Sbjct: 193 RAKCDAVIIGGGTLRADDPLLTSR--GLRNPEPLRVVFSQSLSLPIGAQIWRTES-AKTL 249

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           +   N++ +  +    +N+  +     + ++LL  L  +G   +L E G ++A S I   
Sbjct: 250 VAFSNENALPLIQELPENVEKLKLHESNPRELLEELAKKGCNRILWECGPSLATSAIKQN 309

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
            V  I+++ +  ++G  G+P+    G     F  + +     +V L   GK+  L
Sbjct: 310 CVQEIVIFMAPKLLG--GLPAMTLLGNF--GFDSLDQALILKEVSLAKSGKDFVL 360


>gi|90410896|ref|ZP_01218910.1| Putative pyrimidine deaminase/pyrimidine reductase [Photobacterium
           profundum 3TCK]
 gi|90328109|gb|EAS44420.1| Putative pyrimidine deaminase/pyrimidine reductase [Photobacterium
           profundum 3TCK]
          Length = 371

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 110/368 (29%), Positives = 176/368 (47%), Gaps = 20/368 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            SS D   M  A+  ++     T+ NP+V C+I +   ++G G     G PHAEV AL  
Sbjct: 2   FSSIDHSMMLRAIELAKRGRFTTAPNPNVGCVIAQGSTIVGEGFHYQAGQPHAEVFALRA 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE+ +GATAYVTLEPCSH+GR+PPCAQ +I   + RVV  + DP+ +V GRG++ L   
Sbjct: 62  AGEQTKGATAYVTLEPCSHFGRTPPCAQALINANVSRVVCAMVDPNPKVGGRGIEMLQIA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++ ++ +     ++ R      ++ LK+A S D    ++   S  ITG  ++ 
Sbjct: 122 GIEVQTGLLAADAQALNPGFIKRMKTGLPYVQLKLAASLDGRTALSNGDSKWITGPEARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V   RA++ AIL    TV+ADDP L  R + L E             P R+I+D   ++
Sbjct: 182 DVQRFRARAGAILSTSSTVIADDPSLNVRWSELGEPVHAEYPEVALRQPTRVIIDSKNRV 241

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVT 288
           + D K+   +L    ++               + I     D    +L  L+  L  + + 
Sbjct: 242 TPDFKLF--SLAGKTLLARAEMGQETWSDSVSQVIIPKEDDSEQLNLTSLMLELAKQDIN 299

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRD 344
            + VE GA +A   + S LVD +I+Y++  ++G         +G        +       
Sbjct: 300 HIWVEAGAELAGGLLASGLVDELIIYQAPKLMGCDSRSLINLKGLTSMSQVLSLEITDVR 359

Query: 345 YFGSDVCL 352
             G D+ +
Sbjct: 360 MIGPDLRI 367


>gi|33519699|ref|NP_878531.1| bifunctional pyrimidine deaminase/reductase in pathway of
           riboflavin synthesis [Candidatus Blochmannia floridanus]
 gi|33517362|emb|CAD83747.1| bifunctional pyrimidine deaminase/reductase in pathway of
           riboflavin synthesis [Candidatus Blochmannia floridanus]
          Length = 378

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 120/369 (32%), Positives = 178/369 (48%), Gaps = 23/369 (6%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D  ++S A R +R     T  NP+V C+IVK+  VIG G     G  HAE+ AL  AG
Sbjct: 8   DNDLIYLSRAFRLARKGRFTTMPNPNVGCVIVKENKVIGEGYHIRAGEDHAEIHALRIAG 67

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           + ARGAT YVTLEPCSHYGR+PPC   +I  GI+ VV+ + DPD  + GRG++ L + GI
Sbjct: 68  DSARGATVYVTLEPCSHYGRTPPCTTALINSGIKCVVISMLDPDPEIKGRGVRLLQESGI 127

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   +M SE +     ++ R       I +K+A S D    M    S  IT   S+  V
Sbjct: 128 LVRHSLMLSEAEHINKGFIKRIRTGMPWIKVKLAASLDGRTAMKTGESKWITSVQSRQDV 187

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSL 232
              RA+SD IL    T+L D+P L  R +   +             P+R+I+D   ++  
Sbjct: 188 QCFRAESDVILSTATTILIDNPHLNVRWSFFPKNIQLKYCREHIRQPLRVIIDSANRVLP 247

Query: 233 DSKIIKTALLAPVIIVTENDD----PVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGV 287
             + I+ +    VI+V    D    P          IN++     +L+ L+  L   R +
Sbjct: 248 THRFIQNS--GKVILVRLKKDNLNWPESVEQLLAPEINLVGSYQINLEALMKYLGYVRKI 305

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRR 343
            ++ VE G  ++ S ++  LVD +ILY+S   +G    P      ++     K F  +  
Sbjct: 306 NNVWVEAGPTLSGSLLDIGLVDELILYQSIKFLGSNAKPLCFLPNIDNLKDVKTFKLLNI 365

Query: 344 DYFGSDVCL 352
              G D+ L
Sbjct: 366 KNIGPDIRL 374


>gi|240127481|ref|ZP_04740142.1| Riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 361

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 124/358 (34%), Positives = 182/358 (50%), Gaps = 11/358 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
            M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +AGE A+G
Sbjct: 1   MMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQAGEMAKG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           ATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   GI  +  
Sbjct: 61  ATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAGIKTECG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++E++ +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  V +LRA
Sbjct: 121 LLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVLRA 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           +S A+L GIGTVLAD+P L  R        P RI+LD   +L  +S ++        I  
Sbjct: 181 ESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPNSHLVTDGQSPTYIAT 239

Query: 249 TENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            E D+  L       +I I+          DL  L+ +L   G   ++VE G  +  +F+
Sbjct: 240 LERDEDKLRPYREHAHIRILMPSETAGGKIDLHHLIRLLADEGFGEIMVEAGCELTSAFL 299

Query: 304 NSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
              L D I+LYRS  ++G G     +P           +  V  +  G D+   +   
Sbjct: 300 AENLADEIVLYRSPKILGGGKDLFSLPENRAALSAPPLWTPVSSEILGHDIKTVFRKN 357


>gi|325109372|ref|YP_004270440.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Planctomyces brasiliensis DSM 5305]
 gi|324969640|gb|ADY60418.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Planctomyces brasiliensis DSM 5305]
          Length = 377

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 110/359 (30%), Positives = 179/359 (49%), Gaps = 16/359 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  AL  +R   G    NP V  ++V +   +I  G     G PHAEVQAL  AG+ ARG
Sbjct: 12  MQRALELARQGEGFVEPNPCVGAVVVDENLQLIAEGYHEQYGGPHAEVQALRNAGDRARG 71

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           A  +VTLEPC+H+G++PPC++ +I+ GI RV +   DP      +G + L + G+ +   
Sbjct: 72  AWIFVTLEPCNHHGKTPPCSEAVIQAGIERVFIGCLDPAAHEKRQGAERLREAGLQVEVG 131

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + + E +  L  +       + ++  K A++ D  I      S  I+G  S+  VH LR 
Sbjct: 132 LCQQEAERLLRPFTKLMTTGQPYVHAKWAMTLDGKIATRTGSSQWISGPESRAVVHKLRG 191

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT-ALLAPVII 247
           + DAIL G GTVLAD+P+LT R  G    +P+R+++D   +L L S++++T +   PV++
Sbjct: 192 RCDAILTGRGTVLADNPQLTARPPG--PRTPLRVVVDSQAQLPLTSQLVQTCSSDQPVLL 249

Query: 248 -VTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
             T   D       ++  + +            L  LLT L  R VT+L +E G  +  S
Sbjct: 250 ACTARADAEKVRQLQQLGVEVQQFSASPEGRPQLAALLTELGKRKVTNLFLECGGELLGS 309

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYI 355
           F++ RL+D + ++    ++G     S +  G + +         +  +    DV +  I
Sbjct: 310 FLDQRLIDEVHVFLGPKLVGGKEARSAVLGGGVSEMAEALLLEEIEAETLAQDVYIRGI 368


>gi|262170762|ref|ZP_06038440.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio mimicus MB-451]
 gi|261891838|gb|EEY37824.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio mimicus MB-451]
          Length = 367

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 125/376 (33%), Positives = 188/376 (50%), Gaps = 29/376 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +AGE   GATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+GRG+Q L
Sbjct: 61  MRQAGELTHGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGRGVQML 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++E++ +     +L R      ++ LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R + L +             P+R+ILD  
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPQSGQAQYAETDLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRG 286
            +L  +  + +T   +PV+ V   +  +   A   K          DL +LL  L     
Sbjct: 241 HQLHPELALYQTP--SPVLRVASENADLCISAENGK---------LDLHELLAQLAQQHN 289

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVR 342
           V  + VE G+ +A S I  +LVD IILY +  ++G  G       G  E           
Sbjct: 290 VNQVWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIED 349

Query: 343 RDYFGSDVCLEYIGKN 358
               G+D+ +    K+
Sbjct: 350 CRMVGADLRIIATPKS 365


>gi|118587985|ref|ZP_01545395.1| riboflavin biosynthesis protein [Stappia aggregata IAM 12614]
 gi|118439607|gb|EAV46238.1| riboflavin biosynthesis protein [Stappia aggregata IAM 12614]
          Length = 374

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 167/369 (45%), Positives = 231/369 (62%), Gaps = 15/369 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DG--IVIGRGVTAYGGCPHAEVQ 58
           +S+ DARFM+AA R +R  +G    NPSVA LIV+  DG  +V GRGVT+  G  HAEV 
Sbjct: 4   LSNLDARFMAAAERLTRRGLGRVWPNPSVAALIVRFEDGAAVVAGRGVTSRPGMAHAEVN 63

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           AL +AGE+A+GAT YVTLEPCSHYGR+PPCA+ +IE G++RVVV + DP+ RV+GRG+  
Sbjct: 64  ALNQAGEKAQGATCYVTLEPCSHYGRTPPCAKALIEAGVKRVVVGMLDPNPRVAGRGVGM 123

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L + GI +V  + E   +     +  RQ+++R  + LK+AVS+D  IG AG G V I+G 
Sbjct: 124 LREAGIEVVVGVREKAMQALYRGFTYRQLKQRPVVFLKLAVSRDGFIGRAGEGQVKISGP 183

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
           +S  +VH  RA+ DAILVG GT LADDP+LTCRL GL + SP+R+I+D   +LSL SK++
Sbjct: 184 LSMRKVHGYRAECDAILVGSGTALADDPQLTCRLPGLADRSPVRVIIDRCARLSLTSKLV 243

Query: 238 KTALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLV 292
           +T +  PV +V  N  D           +N+I     +       +L+ L  RG+T ++V
Sbjct: 244 QTCVDVPVWLVCSNTADADKIADLAAAGVNVIRVPAEETGIKPSVILSALATRGITRVMV 303

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGS 348
           EGG+ +A SF+ + LVD + +    IVIGEGGIP+     L +      F  V    FG 
Sbjct: 304 EGGSRLASSFLAADLVDDLCVVTGDIVIGEGGIPALHGLDLADVLKNPKFERVDAGRFGP 363

Query: 349 DVCLEYIGK 357
           D    Y+ +
Sbjct: 364 D-SFVYLRR 371


>gi|153216165|ref|ZP_01950304.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 1587]
 gi|124114423|gb|EAY33243.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 1587]
          Length = 367

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 186/370 (50%), Gaps = 29/370 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +A E  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+G+G+Q L
Sbjct: 61  MRQASELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++E++ +     +L R       + LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R + L +             P+R+ILD  
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPQSVQAQYAEADLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRG 286
            +L  +  + +T   +PV+ V   +  +   A  +K          DL++LL  L     
Sbjct: 241 HQLHPELALYQTP--SPVLRVASENAELCISAENEK---------LDLRELLAQLAQQHN 289

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVR 342
           V  + VE G  +A S I  +LVD IILY +  ++G  G       G  E           
Sbjct: 290 VNQVWVEAGGQLAKSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIED 349

Query: 343 RDYFGSDVCL 352
               G+D+ +
Sbjct: 350 CRMVGADLRI 359


>gi|282850242|ref|ZP_06259621.1| riboflavin biosynthesis protein RibD [Veillonella parvula ATCC
           17745]
 gi|282579735|gb|EFB85139.1| riboflavin biosynthesis protein RibD [Veillonella parvula ATCC
           17745]
          Length = 403

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 124/391 (31%), Positives = 186/391 (47%), Gaps = 39/391 (9%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M  A+  ++   G TS NP V  ++VKD  +IG G     G  HAEV AL +AG+
Sbjct: 2   DDVVYMKRAIELAKLATGHTSPNPLVGAVVVKDNTIIGEGYHHKAGTAHAEVHALNQAGD 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            A+GAT YVTLEPCSHYG++PPCA  IIE GI +V+V   DP+  VSG+G++ L + GI 
Sbjct: 62  NAKGATLYVTLEPCSHYGKTPPCALRIIEAGIAKVIVGSTDPNPLVSGKGMELLREAGIE 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V  +   E       + T     +  +TLK A+S D  I  +   S  IT   S+   H
Sbjct: 122 VVCPVCSDECAELNEHFFTYIQTGKPFVTLKSAMSLDGKIATSTGQSQWITNESSRRDGH 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------------HSPMRIILDPHF 228
           +LRA  DA+LVGIGT+LAD+P+L CRL   +                 H P  IILD   
Sbjct: 182 VLRATHDAMLVGIGTILADNPQLNCRLTDSELSDALLDKSILDEPITIHQPDVIILDSLG 241

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---------------- 272
           +    S++ +       I V++        A  +    +   +                 
Sbjct: 242 RTPTTSRVFEINNRKIHIFVSKGCPKDRIQALEQVGAQVTVVESISTRKSKSTDIVIDIK 301

Query: 273 -RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE-GGIPSPLE 330
              +  +LT L   G TS+LVEGG+A+  SF+ ++  D ++ Y    +IG     P+   
Sbjct: 302 KLSIDDILTKLGELGYTSILVEGGSAIISSFVETKNFDKVVTYIGNTIIGGNDATPAVGG 361

Query: 331 EGY----LEKNFMCVRRDYFGSDVCLEYIGK 357
            G+    +       +     +++ +E   +
Sbjct: 362 RGFESLEVSPQLTFTKTKVLDNNIRIEAYRQ 392


>gi|294793755|ref|ZP_06758892.1| riboflavin biosynthesis protein RibD [Veillonella sp. 3_1_44]
 gi|294455325|gb|EFG23697.1| riboflavin biosynthesis protein RibD [Veillonella sp. 3_1_44]
          Length = 403

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 122/391 (31%), Positives = 185/391 (47%), Gaps = 39/391 (9%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M  A+  ++   G TS NP V  ++VKD  +IG G     G  HAEV AL +AG+
Sbjct: 2   DDVVYMKRAIELAKLATGHTSPNPLVGAVVVKDNTIIGEGYHHKAGTAHAEVHALNQAGD 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            A+GAT YVTLEPCSHYG++PPCA  IIE GI +V+V   DP+  VSG+G++ L + GI 
Sbjct: 62  NAKGATLYVTLEPCSHYGKTPPCALRIIEAGIAKVIVGSTDPNPLVSGKGMELLREAGIK 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V  +   E       + T     +  +T+K A+S D  I  +   S  IT   S+   H
Sbjct: 122 VVCPVCSDECAELNEHFFTYIQTGKPFVTIKSAMSLDGKIATSTGQSQWITNESSRRDGH 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------------HSPMRIILDPHF 228
           +LRA  DA+LVGIGT+LAD+P+L CRL   +                 H P  IILD   
Sbjct: 182 VLRATHDAMLVGIGTILADNPQLNCRLTDSELSDALLDKSILDEPITIHQPDVIILDSLG 241

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---------------- 272
           +    S++ +       I V++           +    +   +                 
Sbjct: 242 RTPTTSRVFEINNRKIHIFVSKGCPKDRIQVLEQVGAQVTVVESISTRKSKSTDIVIDIK 301

Query: 273 -RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE-GGIPSPLE 330
              +  +LT L   G TS+LVEGG+A+  SF+ ++  D ++ Y    +IG     P+   
Sbjct: 302 KLSIDDILTKLGELGYTSILVEGGSAIISSFVETKNFDKVVTYIGNTIIGGNDATPAVGG 361

Query: 331 EGY----LEKNFMCVRRDYFGSDVCLEYIGK 357
            G+    +       +     +++ +E   +
Sbjct: 362 RGFESLEVSPQLTFTKTKVLDNNIRIEAYRQ 392


>gi|294791895|ref|ZP_06757043.1| riboflavin biosynthesis protein RibD [Veillonella sp. 6_1_27]
 gi|294457125|gb|EFG25487.1| riboflavin biosynthesis protein RibD [Veillonella sp. 6_1_27]
          Length = 404

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 124/391 (31%), Positives = 186/391 (47%), Gaps = 39/391 (9%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M  A+  ++   G TS NP V  ++VKD  +IG G     G  HAEV AL +AG+
Sbjct: 3   DDVVYMKRAIELAKLATGHTSPNPLVGAVVVKDNTIIGEGYHHKAGTAHAEVHALNQAGD 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            A+GAT YVTLEPCSHYG++PPCA  IIE GI +V+V   DP+  VSG+G++ L + GI 
Sbjct: 63  NAKGATLYVTLEPCSHYGKTPPCALRIIEAGIAKVIVGSTDPNPLVSGKGMELLREAGIE 122

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V  +   E       + T     +  +TLK A+S D  I  +   S  IT   S+   H
Sbjct: 123 VVCPVCSDECAELNEHFFTYIQTGKPFVTLKSAMSLDGKIATSTGQSQWITNESSRRDGH 182

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------------HSPMRIILDPHF 228
           +LRA  DA+LVGIGT+LAD+P+L CRL   +                 H P  IILD   
Sbjct: 183 VLRATHDAMLVGIGTILADNPQLNCRLTDSELSDALLDKSILDEPITIHQPDVIILDSLG 242

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---------------- 272
           +    S++ +       I V++        A  +    +   +                 
Sbjct: 243 RTPTTSRVFEINNCKIHIFVSKGCPKDRIQALEQVGAQVTVVESISTRKSKSTDIVIDIK 302

Query: 273 -RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE-GGIPSPLE 330
              +  +LT L   G TS+LVEGG+A+  SF+ ++  D ++ Y    +IG     P+   
Sbjct: 303 KLSIDDILTKLGELGYTSILVEGGSAIISSFVETKNFDKVVTYIGNTIIGGNDATPAVGG 362

Query: 331 EGY----LEKNFMCVRRDYFGSDVCLEYIGK 357
            G+    +       +     +++ +E   +
Sbjct: 363 RGFESLEVSPQLTFTKTKVLDNNIRIEAYRQ 393


>gi|300087628|ref|YP_003758150.1| riboflavin biosynthesis protein RibD [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527361|gb|ADJ25829.1| riboflavin biosynthesis protein RibD [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 362

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 109/363 (30%), Positives = 173/363 (47%), Gaps = 16/363 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL+ +   +G  S NP+V  ++VKD  ++G+G T   G  HAEV AL +AG  ++GA
Sbjct: 1   MQQALKLAGLALGEVSPNPAVGAVVVKDDEIVGQGYTQPPGQEHAEVMALNQAGARSQGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129
             YVTLEPC+H GR+PPC   II  GI+ V     D +  V G+G   L+  GI V    
Sbjct: 61  VMYVTLEPCAHQGRTPPCTDAIIAAGIKEVHFATLDDNPVVFGKGKAALTAAGIEVHVGE 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
                +    AY          +T K A+S D  I      S  I+   S+   H LR +
Sbjct: 121 HRDAARELNEAYFKYINTGLPFVTAKFAMSLDGKIATRTGDSKWISNDESRAFAHSLRHE 180

Query: 190 SDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +DAI+ G+GTV+AD+P+LT R      G     P+RI++D H +    + +        +
Sbjct: 181 ADAIMAGVGTVIADNPKLTARCCAGSGGTSHKQPLRIVVDSHGRTPDTAVLFHEPGR-TI 239

Query: 246 IIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           +           + + +    +          DL  L++ L  + +TS++VEGG+++  S
Sbjct: 240 LAFGGQVSEERRIPYTQAGAELESFPDGNGRVDLPALMSFLGKQQITSVIVEGGSSLLGS 299

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE-YI 355
             ++ LVD +I++ + ++IG GG  + +     E           R    G D  +  Y+
Sbjct: 300 MFDAGLVDKVIVFIAPMIIGGGGALTAVGGNGAETLDQACRLEKTRTWRLGEDTVITGYV 359

Query: 356 GKN 358
            K+
Sbjct: 360 NKD 362


>gi|262404604|ref|ZP_06081159.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio sp. RC586]
 gi|262349636|gb|EEY98774.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio sp. RC586]
          Length = 367

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 191/377 (50%), Gaps = 31/377 (8%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +AGE  RGATAYVTLEPCSHYGR+PPCA+ +++ G+ +V+  + DP+ +V+GRG+Q L
Sbjct: 61  MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLVKAGVAKVICAMQDPNPQVAGRGVQML 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++E++ +     +L R      ++ LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R + L +             P+R+ILD  
Sbjct: 181 ARKDVQCFRAQASAILSTSQTVLADNASLAVRWHDLPKSVQAQYAETDLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILV-GR 285
            +L  +  + +T              PVL +A    ++ I   + + DL++LL  L    
Sbjct: 241 HQLHPELALYQTP------------SPVLRVASENADLCISTENGKLDLRELLAQLAQQH 288

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCV 341
            V  + VE G+ +A S I  +LVD IILY +  ++G  G       G  E          
Sbjct: 289 NVNQVWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIE 348

Query: 342 RRDYFGSDVCLEYIGKN 358
                G+D+ +    K+
Sbjct: 349 DCRMVGADLRIIATPKS 365


>gi|330969741|gb|EGH69807.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 378

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 129/364 (35%), Positives = 186/364 (51%), Gaps = 20/364 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            ++ D  +M+ AL  +R  +  T  NP V C+IV++G ++G G  A  G PHAEV AL +
Sbjct: 5   QAALDVHYMARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQ 64

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH GR+PPCA  +IE G+ RVV  + DP+  VSGRGL  L   
Sbjct: 65  AGELARGATAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNA 124

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++ESE +     +L R      ++ +K+A+S D    MA   S  ITG  +++
Sbjct: 125 GIGVQCGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARS 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRAQS  +L G  TVLAD   LT R + L             +P+R+++D   ++ 
Sbjct: 185 AVQRLRAQSSVVLSGADTVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLRVP 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVT 288
           LD+   +       ++VT            + +  +   D     DL++L+  L  RGV 
Sbjct: 245 LDAPFFQAGSA---LVVTCAAASARGRYQEEGHEMLALADSAGHVDLRRLMGELAARGVN 301

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345
            +LVE G  +A +F    LVD   L+ +   +G    P    PL +         V    
Sbjct: 302 EVLVEAGPRLAGAFARLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIVEMRA 361

Query: 346 FGSD 349
            G+D
Sbjct: 362 VGND 365


>gi|262373927|ref|ZP_06067204.1| riboflavin biosynthesis protein RibD [Acinetobacter junii SH205]
 gi|262310938|gb|EEY92025.1| riboflavin biosynthesis protein RibD [Acinetobacter junii SH205]
          Length = 366

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 190/369 (51%), Gaps = 22/369 (5%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           S +  +M  A+  +R     T  NP+V C+IVKDG +IG G     G PHAEV AL +AG
Sbjct: 10  SENQYWMQQAIDLARRGQYSTKPNPNVGCVIVKDGKIIGEGFHPKAGQPHAEVFALRQAG 69

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E A+ ATAYVTLEPC+H+GR+PPCA+ +++  +++VVV   DP+  V+G+G++ L   GI
Sbjct: 70  ENAKDATAYVTLEPCAHFGRTPPCAEALVKAQVKKVVVACSDPNPLVAGKGVKILQDAGI 129

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   + + E K     +L        ++ LKIA S D    MA   S  ITG  ++  V
Sbjct: 130 EVETGICDEEAKTLNFGFLKAMSTGLPYVRLKIASSLDGRTAMASGESKWITGTAARQDV 189

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----HSPMRIILDPHFKLSLDSKIIKT 239
              RA S A++ GI TVLADD EL  R     +      P RIILD   +L L +KI++ 
Sbjct: 190 QHWRAISAAVITGIQTVLADDCELNVRSLDGVDLSSVVQPKRIILDRQGQLPLSAKILQN 249

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAV 298
                V+++T              ++ +I    + L +LL  L  +  +  +LVE GA +
Sbjct: 250 PE--TVMVMT-------PFRQELADLGVIQLAPQPLNQLLQTLTQQYQIYDVLVEAGATL 300

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           + +F+   LVD +I Y +  ++G+   P       +   +  F  V     G D+ L  +
Sbjct: 301 STAFLEQGLVDEMISYVAPTLLGQSARPMFNAKFSKMAEQLRFELVDVTQLGQDIRLRLL 360

Query: 356 GKNLCLQEL 364
                +QE+
Sbjct: 361 P----IQEM 365


>gi|253996924|ref|YP_003048988.1| riboflavin biosynthesis protein RibD [Methylotenera mobilis JLW8]
 gi|253983603|gb|ACT48461.1| riboflavin biosynthesis protein RibD [Methylotenera mobilis JLW8]
          Length = 372

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 120/363 (33%), Positives = 184/363 (50%), Gaps = 12/363 (3%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
            +S+ D  +M+ ALR +   +  T  NP V C+IV+D  ++G+G     G PHAEV AL 
Sbjct: 3   TLSTSDHTYMNLALRLAAQGLYTTQPNPRVGCVIVRDQQIVGQGAHHKAGEPHAEVFALR 62

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +AG  A GA  YVTLEPCSH+GR+PPC Q +I    +RVV+ + DP+  V+GRG+  L  
Sbjct: 63  QAGALAEGADVYVTLEPCSHFGRTPPCVQAVIAAKPKRVVIAMQDPNPLVAGRGVTALRA 122

Query: 122 KGIIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           +G+ V   +  +        ++ R      ++  KIA S D    ++   S  ITG  ++
Sbjct: 123 QGVEVVVGVLEQEAVALNVGFIARMTRGFPYVRSKIAASLDGRTALSNGKSQWITGEAAR 182

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             V   RAQS AIL GIGTVLAD+P +T R        P+R+I+D   +L L+S +++  
Sbjct: 183 QDVQHWRAQSCAILTGIGTVLADNPSMTVRFPTAT-RQPLRVIVDSKLQLPLNSNMLEPT 241

Query: 241 LLA--PVIIV----TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           +LA  PV++     TE    VLA    +           DL +LL +L  R V  +LVE 
Sbjct: 242 MLAQSPVLVAYVVDTEQRAAVLAATGAELLCIPNQTQQVDLAQLLQVLAQRDVNEVLVEA 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDV 350
           G  +    +++ L+D  I Y +  ++G           +       +   +     G+D+
Sbjct: 302 GQGLNGGLLHAGLIDEFIFYYAPKLMGSAAHGMFAMPAFTTMQQVPDLQVLDVRQVGADI 361

Query: 351 CLE 353
            + 
Sbjct: 362 RVR 364


>gi|296160058|ref|ZP_06842878.1| riboflavin biosynthesis protein RibD [Burkholderia sp. Ch1-1]
 gi|295889804|gb|EFG69602.1| riboflavin biosynthesis protein RibD [Burkholderia sp. Ch1-1]
          Length = 391

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 185/368 (50%), Gaps = 25/368 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +R  +  T  NP V C++VK+G VIG G T   G  HAE++AL++
Sbjct: 2   FSQTDFVHMERALALARRGMYTTDPNPRVGCVLVKNGEVIGEGFTQPAGQDHAEIRALKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + RGATAYVTLEPCSH+GR+PPC   +IE  +  VV  ++DP+  VSGRGL  L
Sbjct: 62  ARSRGHDLRGATAYVTLEPCSHFGRTPPCVNALIEAQVALVVAAMEDPNPLVSGRGLAIL 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++ +E       +++R    R  + +K+A S D   G+    S  ITG  
Sbjct: 122 RDAGIEVRCGLLANEAHELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGVSQWITGEA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H  RA++ AIL GIGTV  DDP +T R        P R+++D    +  +++I+ 
Sbjct: 182 ARADGHAWRARASAILTGIGTVRGDDPRMTVRAVD-TPRQPQRVLIDSQLDVPPEAQIL- 239

Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291
               AP +I   N D      A A R +   I+         DL  +L +L  R V  L 
Sbjct: 240 --AGAPTLIFCGNLDQRHTDRANALRDRGAEIVQLANPAGKVDLPAVLKVLGERNVNELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344
           VE G  +  S +    VD +++Y +  ++G           P  LE+  ++ +F  V  D
Sbjct: 298 VEAGYKLNGSLLREGCVDELLVYLAPSLLGMDSMSMFSLAAPETLED-RVKLSFHAV--D 354

Query: 345 YFGSDVCL 352
             G D+ +
Sbjct: 355 RIGDDLRI 362


>gi|255020757|ref|ZP_05292816.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Acidithiobacillus caldus ATCC 51756]
 gi|254969819|gb|EET27322.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Acidithiobacillus caldus ATCC 51756]
          Length = 369

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 125/366 (34%), Positives = 184/366 (50%), Gaps = 14/366 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL  +R  +  T  NP V  ++V+DG ++GRG     G  HAEV AL +AGE ARGA
Sbjct: 1   MAEALTLARRGLYSTHPNPRVGAVVVRDGQIVGRGAHLRAGDAHAEVFALAQAGERARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPC H+GR+PPC   I+  G+ RVV+ + DP+ RV G G+  L Q+G+ +    
Sbjct: 61  TLYVTLEPCCHHGRTPPCTDAILTAGVARVVIAIADPNPRVRGGGIALLQQQGLQVELGC 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +  E       ++ R    R  I LK A S D  + +A   S  +TG  ++  V   RA 
Sbjct: 121 LAEEATALNIGFVRRMRSGRPWIRLKQAQSLDGCVALASGESQWLTGSAARADVQRERAA 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           + AI+VG+GTVLAD+P L  R++      P +IILD H +   D+ +  T      I   
Sbjct: 181 ASAIVVGVGTVLADNPRLAPRVDFPLCRFPHKIILDSHLRTPADAALFDTPGEI-WIFHG 239

Query: 250 ENDDPVLALAFRKKNINIIYCD------CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           ++ DP   +   ++  ++            DL  L T L  R    +LVE G  +A S +
Sbjct: 240 QDADPERRIRLIQRGAHLQGLPMGPKGVGLDLAALWTALAQRECNEVLVEAGPELATSLL 299

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN- 358
               VD  +LY +  ++GEG  P+    P  +     ++   R +    DV L+ +    
Sbjct: 300 RGGWVDEWLLYLAPKILGEGAQPAARLGPYAQLDAVPSWRLWRAETIAGDVKLQLLSAEG 359

Query: 359 -LCLQE 363
             CLQE
Sbjct: 360 QSCLQE 365


>gi|194333661|ref|YP_002015521.1| riboflavin biosynthesis protein RibD [Prosthecochloris aestuarii
           DSM 271]
 gi|194311479|gb|ACF45874.1| riboflavin biosynthesis protein RibD [Prosthecochloris aestuarii
           DSM 271]
          Length = 373

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 115/364 (31%), Positives = 180/364 (49%), Gaps = 18/364 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D  +M   L  +R   GL S NP V  +IV +  V+G G     G PHAEV AL   
Sbjct: 8   TARDEYYMHRCLELARKGAGLVSPNPMVGSVIVVEDRVVGEGFHERYGGPHAEVNALASV 67

Query: 64  GEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            +      +T YV LEPCSHYG++PPC+  II   IRRVVV   DP  +V+G+G++ L Q
Sbjct: 68  SDASLLPSSTLYVNLEPCSHYGKTPPCSDLIISKKIRRVVVGCLDPHEKVAGKGIEKLRQ 127

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            G+ +   +++ E +    A++         + LK A + D  I +A   S  +TG  S+
Sbjct: 128 AGVEVTIGVLQRESEALNEAFIKSHTISMPFVVLKTAQTIDGRIAVASGESKWVTGAESR 187

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            +VH +R+  DA++    TV+AD+  LT R    +  +P+R++LD   ++ L S I    
Sbjct: 188 REVHRMRSVHDAVMTTSSTVIADNSRLTVR--HCEGRNPVRVVLDRLLRVPLSSAIFDGE 245

Query: 241 LLAPVIIVTEND--DPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRG-VTSLLVE 293
             A  I+ T N       A A +   + +       D  DL  +L  L     + S++VE
Sbjct: 246 --AKTILYTSNALGSSEKARALKAMGVIVCAAGDDGDFLDLSAVLKSLHDEHALLSIMVE 303

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR----DYFGSD 349
            G  +A + I  RLVD I+ + +  + G  G+ +    G    +   V R     + G+D
Sbjct: 304 AGGTLAGALIRHRLVDRIVWFVAPKLFGADGLGAVGSLGLQSVDDAPVMRFSSSRFLGND 363

Query: 350 VCLE 353
           +C+E
Sbjct: 364 LCIE 367


>gi|261211387|ref|ZP_05925675.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio sp. RC341]
 gi|260839342|gb|EEX65968.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio sp. RC341]
          Length = 367

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 127/376 (33%), Positives = 190/376 (50%), Gaps = 29/376 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +AGE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+GRG+Q L
Sbjct: 61  MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIQAGVAKVICAMQDPNPQVAGRGVQML 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++E++ +     +L R      ++ LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSSA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R + L               P+R+ILD  
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPPSVQAQYAEADLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRG 286
            +L  +  + +T   +PV+ V   +  +   A   K          DL++LLT L     
Sbjct: 241 HQLYPELALYQTP--SPVLRVASENADLRISAENGK---------LDLRELLTQLAQQHN 289

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVR 342
           V  + VE G+ +A S I  +LVD IILY +  ++G  G       G  E           
Sbjct: 290 VNQVWVEAGSQLAQSLIEQQLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIED 349

Query: 343 RDYFGSDVCLEYIGKN 358
               G+D+ +    K+
Sbjct: 350 CRMVGADLRIIATPKS 365


>gi|58699421|ref|ZP_00374173.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225630417|ref|YP_002727208.1| riboflavin biosynthesis protein RibD [Wolbachia sp. wRi]
 gi|58534061|gb|EAL58308.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225592398|gb|ACN95417.1| riboflavin biosynthesis protein RibD [Wolbachia sp. wRi]
          Length = 360

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 128/354 (36%), Positives = 185/354 (52%), Gaps = 6/354 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FMS ALR +  ++G  + NP+V C+IVKDG ++  G T  GG PHAEV AL+ A + 
Sbjct: 3   DDHFMSIALRLAEKNLGNVAPNPAVGCVIVKDGTIVSEGYTGIGGRPHAEVVALQNAKDS 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GAT Y+TLEPC H+G + PC   II+  I+RVV+   DPD RVSGRG++ L + GI +
Sbjct: 63  THGATIYITLEPCCHHGVTGPCTAKIIKASIKRVVIATIDPDSRVSGRGMKALKEAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M+ E K     + T +   R  I  K+A + D  I      S  IT   ++N VH 
Sbjct: 123 EQGIMQKEAKELNVGFFTTKELHRPFIACKVATTLDGKIATFTGDSKWITSENTRNWVHE 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR + DAI++G  T++ DDP LTCRL GL   SP+R+I+D   +L  +  I KTA     
Sbjct: 183 LRTKYDAIMIGSNTLINDDPLLTCRLPGLGSRSPIRLIIDSQGRLKEEHNIAKTADKVIT 242

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKL-LTILVGRGVTSLLVEGGAAVAHSFIN 304
            ++T  +            +N        LK + L ++   G+T LLVEGG  +    + 
Sbjct: 243 WVITNKEVEKKIKNINYLVVNSSNAGKVCLKDMALKLVSEIGITRLLVEGGGVLITELLK 302

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEY 354
             L+D +I+ RS  ++G    P   + G    N    F   +   F  D+   +
Sbjct: 303 CNLIDRLIICRSGKILGNDATPFVGDLGIQFINNCYQFKKTKIIEFSEDIVEVW 356


>gi|322381771|ref|ZP_08055725.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase-like
           protein/5-amino-6-(5-phosphoribosylamino) uracil
           reductase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321154159|gb|EFX46481.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase-like
           protein/5-amino-6-(5-phosphoribosylamino) uracil
           reductase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 362

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 120/349 (34%), Positives = 193/349 (55%), Gaps = 10/349 (2%)

Query: 18  SRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLE 77
           ++   G T  NP V C++VKDG +IG G   + G  HAEV AL+ AG EA G+TAYVTLE
Sbjct: 2   AKGAKGQTGVNPVVGCVLVKDGRIIGMGAHLHRGQGHAEVHALQMAGAEAEGSTAYVTLE 61

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKI 136
           PCSH+G++PPC+  +I+ G++RVV+   DP+ +V+G G++ L   GI VD  ++  E   
Sbjct: 62  PCSHFGKTPPCSGRLIDHGVKRVVIAAVDPNPQVAGAGIERLRSAGIEVDVGLLAEEASA 121

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
              A+    V     +T+K A + D  I      S  ITG +S+  VH +R Q   ILV 
Sbjct: 122 MNEAFNKYIVTGMPFVTMKTASTLDGKIAAKTGDSKWITGDLSRAYVHTMRHQHQGILVS 181

Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN-DDPV 255
           + TV+ADDP+L+ RL  +    P+RI+ D   +L L++++++     P I++T     P 
Sbjct: 182 VDTVIADDPQLSTRLT-VPALQPVRIVADSRLRLPLEAQVLQDLDRQPTIVLTTELSSPE 240

Query: 256 LALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
              A  + + +++ C      DL+  +  L  R + S+L+EGG  +  + +   LVD I+
Sbjct: 241 RRRALEELSASVLTCGSGPQVDLRLAMKQLGEREIGSILLEGGGRLNGAMLEQGLVDKIM 300

Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           L+ +  +IG    P  +     E+    +R + F +    E +G+++CL
Sbjct: 301 LFVAPKIIGGKLSPQAISMEGWERMKDALRLERFQA----EPVGEDICL 345


>gi|83718892|ref|YP_442086.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
           E264]
 gi|83652717|gb|ABC36780.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
           E264]
          Length = 378

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 116/362 (32%), Positives = 175/362 (48%), Gaps = 13/362 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +   +  T+ NP V C+IVKD +VIG G T   G  HAEVQAL++
Sbjct: 2   FSENDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + R AT YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L
Sbjct: 62  ARARGNDLRDATVYVTLEPCSHFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++  E       +++R    R  + +K A S D    +A   S  ITG  
Sbjct: 122 RDAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           +++  H  RA++ AIL GIGTV  DDP+L  R        P R+++D    + L +++++
Sbjct: 182 ARDDGHKWRARACAILTGIGTVREDDPQLNVR-GVDTPRQPRRVLIDSRLDIPLTARLLE 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEG 294
              L       +      A A R +   I+         DL  +L  L  RG+  L VE 
Sbjct: 241 GGSLLIFCGALDAQSEARAQALRARGAEIVPLANVRGKVDLPAMLAALGERGINELHVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           G  +  S +  R VD +++Y +  ++G         +                +  G D+
Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLGADAAAMFDLAAPASLIDRTRLAFHSVERVGDDL 360

Query: 351 CL 352
            +
Sbjct: 361 RI 362


>gi|313109499|ref|ZP_07795455.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
           39016]
 gi|310881957|gb|EFQ40551.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
           39016]
          Length = 373

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 124/365 (33%), Positives = 179/365 (49%), Gaps = 22/365 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ D  +M+ AL  +R  +  T  NP V C++VKDG V+G G     G PHAEV AL +
Sbjct: 1   MNAADPLYMARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V GRGL  L Q 
Sbjct: 61  AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVGGRGLLRLMQA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E+E +     ++ R       + +K+A+S D    MA   S  ITG  +++
Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPAARS 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRA+S  +L G  T+LADD  L  R + L              P+R+++D   ++ 
Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRVP 240

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGV 287
           L+S   +     P ++ T          F+     ++         DL KLL  L  RG 
Sbjct: 241 LESAFYQ---AGPALVATCAAASARER-FQDAGHELLALPSAEGHVDLHKLLLELAARGA 296

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRD 344
             +LVE G  +A +F    LVD   L+ +   +G    P    PL               
Sbjct: 297 NEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAQLRIDDIR 356

Query: 345 YFGSD 349
             G D
Sbjct: 357 AVGDD 361


>gi|70732823|ref|YP_262590.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens Pf-5]
 gi|68347122|gb|AAY94728.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens Pf-5]
          Length = 377

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 129/358 (36%), Positives = 179/358 (50%), Gaps = 17/358 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            DA +M+ AL  +R     T  NP V C+IV+DG V+G G     G PHAEV AL  AGE
Sbjct: 10  LDAHYMARALELARKGRYSTHPNPRVGCVIVRDGQVVGEGWHVRAGEPHAEVHALRAAGE 69

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGLQ L+Q GI 
Sbjct: 70  LARGATAYVTLEPCSHHGRTPPCADALVNAGVARVVAAMQDPNPEVAGRGLQRLAQAGID 129

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
               ++E E +     +L R      ++ +K+A+S D    MA   S  ITG  +++ V 
Sbjct: 130 THGGVLEGEARAINKGFLKRMEHGLPYVRVKLAMSLDGRTAMASGESQWITGPAARSAVQ 189

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDS 234
            LRA+S  +L G  TVLADD  LT R   L              P+R+++D   ++ LD+
Sbjct: 190 RLRAESSVVLTGADTVLADDARLTVRAAELGLDAEQTALAMSRPPLRVLIDGRLRVPLDA 249

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
              K     P ++ T            +  I        DL++LL  L  RGV  +LVE 
Sbjct: 250 PFFK---AGPALVATCAAVEEQYANGPECLIVPGPDGQVDLRRLLLELAARGVNEVLVEA 306

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSD 349
           G  +A +F    LVD   ++ +   +G    P    PL +         +     G D
Sbjct: 307 GPRLAGAFAQQGLVDEYQIFVAGKFLGSSARPLLDWPLAQMSQAPLLKIIEMRAVGDD 364


>gi|296387387|ref|ZP_06876886.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
           PAb1]
          Length = 373

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 124/365 (33%), Positives = 180/365 (49%), Gaps = 22/365 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ D  +M+ AL  +R  +  T  NP V C++VKDG V+G G     G PHAEV AL +
Sbjct: 1   MNAADPLYMARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q 
Sbjct: 61  AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E+E +     ++ R       + +K+A+S D    MA   S  ITG  +++
Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPAARS 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRA+S  +L G  T+LADD  L  R + L              P+R+++D   ++ 
Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRVP 240

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGV 287
           L+S   +     P ++ T          F+     ++         DL KLL  L  RG 
Sbjct: 241 LESAFYQ---AGPALVATCAAASARER-FQDAGHELLALPSAEGHVDLHKLLVELAARGA 296

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRD 344
             +LVE G  +A +F    LVD   L+ +   +G    P    PL               
Sbjct: 297 NEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAQLRIDDIR 356

Query: 345 YFGSD 349
             G D
Sbjct: 357 AVGDD 361


>gi|302036973|ref|YP_003797295.1| bifunctional daminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Candidatus Nitrospira defluvii]
 gi|300605037|emb|CBK41370.1| fused Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Candidatus Nitrospira defluvii]
          Length = 373

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 125/372 (33%), Positives = 193/372 (51%), Gaps = 15/372 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +SS D  +M+ ALR +    G TS NP V  L+V  G ++G+G     G PHAEV AL +
Sbjct: 1   MSSRDREYMTLALRLAAKGRGSTSPNPMVGALVVTRGRIVGQGSHRKAGGPHAEVIALSQ 60

Query: 63  AGEEARGATAYVTLEPCSH-YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           AG  A+G T YVTLEPCSH   R+PPC   ++  G+RRVVV + DP+ +V G G+  L++
Sbjct: 61  AGSRAKGGTLYVTLEPCSHLKKRTPPCVPLVMASGVRRVVVAMVDPNPQVKGNGVAQLTR 120

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +     E+E      AYL      R    LK  ++ D  I  A   S  IT  +S+
Sbjct: 121 AGIRVDVGCCEAEATQLNQAYLHWVKTGRPFTILKAGMTLDGQIATASGESQWITDEVSR 180

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRL----NGLQEHSPMRIILDPHFKLSLDSKI 236
            Q H LRA  DAILVGIGTVL D+P+LT R+           P+RI++D   ++ L +K+
Sbjct: 181 QQAHRLRADVDAILVGIGTVLRDNPQLTARVTDDPPRTTGRQPLRIVVDSRLRIPLKAKV 240

Query: 237 IKTALLAPVIIVTENDDPVLALA-FRKKNINIIYCDC----RDLKKLLTILVGRGVTSLL 291
           ++    A  +I T        +   RK+ I+++         +L  L   L   GVT++L
Sbjct: 241 LEHQQTAHTLIATTAAASARKVERLRKRGIDVLVLPKAGGHVNLPVLWARLGQLGVTTVL 300

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           VEGG+ +  + + + L   ++ Y + +++G              ++   +R      +V 
Sbjct: 301 VEGGSDLNAAVLQAGLPQRLMCYVAPLLLGGQDAKGLFGG----RSPRRLRSAVPLKNVR 356

Query: 352 LEYIGKNLCLQE 363
           +E +G+++ +Q 
Sbjct: 357 IEPVGRDMLIQA 368


>gi|319639397|ref|ZP_07994147.1| riboflavin biosynthesis protein RibD [Neisseria mucosa C102]
 gi|317399292|gb|EFV79963.1| riboflavin biosynthesis protein RibD [Neisseria mucosa C102]
          Length = 367

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 124/367 (33%), Positives = 191/367 (52%), Gaps = 11/367 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S+ D + M  AL  ++     TS NP V C+I     ++G+G     G PHAEV AL +
Sbjct: 2   FSALDTQMMQTALELAKLGRFSTSPNPRVGCVIAHGAQIVGQGFHVKAGEPHAEVHALRQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A   A+GATAYVTLEPCSHYGR+PPCA+ +I  G+ RVV  + DP+  V+G+GL  L   
Sbjct: 62  AQAAAKGATAYVTLEPCSHYGRTPPCAEALIHSGVARVVASMTDPNPLVAGKGLSMLEAA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  +  ++E++ +     +L+R    R  I LK A S D    ++   S  ITG  ++ 
Sbjct: 122 GIRTESGLLEAQARELNRGFLSRIERGRPFIRLKCAASLDGKTALSDGRSFWITGEAARE 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V +LRA+S A+L GIGTVLAD+P+L  R +      P RI+LD   ++ LD  ++    
Sbjct: 182 DVQILRAESCAVLTGIGTVLADNPKLNVR-SFPTLRQPARIVLDSRLQIPLDCHLVTDTD 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296
              VI+   +D+  L    + ++I II          +L  L+  L   G   +L E G+
Sbjct: 241 SPTVIVTLSSDEKRLQALGKFEHIRIIRPSEHINGRINLPSLMPQLAELGFGEVLAEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +  +F+   LVD I+LY++  ++G G     +P        +  ++    +  G D+  
Sbjct: 301 TLVSAFLKDDLVDEIVLYQAPKLLGAGKPLFSLPENPAALLSDGPWLSQSVEIIGQDIKW 360

Query: 353 EYIGKNL 359
               K++
Sbjct: 361 VLRKKSV 367


>gi|294627697|ref|ZP_06706279.1| 5-amino-6-uracil reductase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292598049|gb|EFF42204.1| 5-amino-6-uracil reductase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 369

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 122/357 (34%), Positives = 189/357 (52%), Gaps = 8/357 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D R+M+ ALR +      T  NP V C+IV+DG+ +G G     G PHAEV AL  A
Sbjct: 9   SADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRAA 68

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPC+HYGR+PPCA  +IE G+ RVV  + DP  +V+G G   L + G
Sbjct: 69  GELARGATAYVTLEPCAHYGRTPPCALALIEAGVMRVVAAMADPFPQVNGGGFALLREAG 128

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I ++  +M+++ +     +L+R    R  + +K+  S D    +A   S  IT   ++  
Sbjct: 129 IDVLSGVMQAQARTLNRGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITSADARAD 188

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V   RA++ AIL G GTV+ADDP +T R+        P+R++LD   +      I +   
Sbjct: 189 VQRWRARAGAILTGAGTVMADDPSMTVRMGEDSPVVPPLRVVLDAGLRTLACRNIRQGD- 247

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            AP + +   D    +L   +     ++    DL  +L +L  RG+  + VEGGA ++ +
Sbjct: 248 -APTLYLHGEDVSAPSLDDAQFLAMPLHAGRFDLAAVLALLAERGINEVHVEGGATLSGA 306

Query: 302 FINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
            + + LVD +++Y + +++G+   P      +E          +     G D+ L Y
Sbjct: 307 LLQAGLVDELLVYVAPVLLGDSAKPLLAGLGIETMAQRAALQLLDVRQLGQDLRLRY 363


>gi|167580933|ref|ZP_02373807.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
           TXDOH]
          Length = 378

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 116/362 (32%), Positives = 175/362 (48%), Gaps = 13/362 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +   +  T+ NP V C+IVKD +VIG G T   G  HAEVQAL++
Sbjct: 2   FSENDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + R AT YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L
Sbjct: 62  ARARGNDLRDATVYVTLEPCSHFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++  E       +++R    R  + +K A S D    +A   S  ITG  
Sbjct: 122 RDAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           +++  H  RA++ AIL GIGTV  DDP+L  R        P R+++D    + L +++++
Sbjct: 182 ARDDGHKWRARACAILTGIGTVREDDPQLNVR-GVDTPRQPRRVLIDSRLDIPLTARLLE 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEG 294
              L       +      A A R +   I+         DL  +L  L  RG+  L VE 
Sbjct: 241 GGSLLIFCGALDAQSEARAQALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           G  +  S +  R VD +++Y +  ++G         +                +  G D+
Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLGADAAAMFDLAAPASLIDRTRLAFHSVERVGDDL 360

Query: 351 CL 352
            +
Sbjct: 361 RI 362


>gi|329943233|ref|ZP_08292007.1| riboflavin biosynthesis protein RibD [Chlamydophila psittaci Cal10]
 gi|332287812|ref|YP_004422713.1| riboflavin biosynthesis protein [Chlamydophila psittaci 6BC]
 gi|313848384|emb|CBY17388.1| riboflavin biosynthesis protein RibD [Chlamydophila psittaci RD1]
 gi|325507267|gb|ADZ18905.1| riboflavin biosynthesis protein [Chlamydophila psittaci 6BC]
 gi|328814780|gb|EGF84770.1| riboflavin biosynthesis protein RibD [Chlamydophila psittaci Cal10]
 gi|328915072|gb|AEB55905.1| riboflavin biosynthesis protein RibD [Chlamydophila psittaci 6BC]
          Length = 368

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 106/362 (29%), Positives = 175/362 (48%), Gaps = 11/362 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S     FM  A+         +  NP V C+IVK+G +IG G     G PHAE +A+  
Sbjct: 4   FSEQQLFFMRRAIELGEKGAFSSQPNPWVGCVIVKNGRIIGEGYHEKAGQPHAEEKAIRS 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A E   G+  YVTLEPC HYG +PPC   +I+  +  V V + DPD RVSGRG+  L + 
Sbjct: 64  ASESIEGSEVYVTLEPCCHYGNTPPCVNLLIKYKVAAVYVALLDPDSRVSGRGIASLRKA 123

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI + + + + E +  L +YL ++   +  + +K A + D  +      S  IT   ++ 
Sbjct: 124 GICVYEGLGKEEAERSLKSYLYQRTHGKPWVVIKSAATLDGQVADKDGQSQWITCPEARA 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKT 239
            V  LRA S AI+VG  TVL D+P LT R     L    P+R+++D    +  ++ I  +
Sbjct: 184 DVGKLRACSQAIIVGSKTVLKDNPLLTARKPSGELYPCQPLRVVVDSKGVIPPEANIFHS 243

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGG 295
              + + + T               ++++  + +D    L +L+T L       +LVEGG
Sbjct: 244 TGKS-LYVTTAQSSKDHRKKIEDLGVDLLVTESKDSKVNLHELMTYLSTTHTLQVLVEGG 302

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG---YLEKNFMCVRRDYFGSDVCL 352
           A +  SF+  RL ++++LY    ++G+   P   + G   +  +  +    +  G+ +  
Sbjct: 303 AVLHTSFLKERLANTLVLYLGPKILGDQRKPIFGDLGLYLHSSQKIVPTFSEILGNSLKT 362

Query: 353 EY 354
            +
Sbjct: 363 SW 364


>gi|107103570|ref|ZP_01367488.1| hypothetical protein PaerPA_01004640 [Pseudomonas aeruginosa PACS2]
 gi|218889663|ref|YP_002438527.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
           LESB58]
 gi|218769886|emb|CAW25647.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
           LESB58]
          Length = 373

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 124/365 (33%), Positives = 180/365 (49%), Gaps = 22/365 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ D  +M+ AL  +R  +  T  NP V C++VKDG V+G G     G PHAEV AL +
Sbjct: 1   MNAADPLYMARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q 
Sbjct: 61  AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E+E +     ++ R       + +K+A+S D    MA   S  ITG  +++
Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARS 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRA+S  +L G  T+LADD  L  R + L              P+R+++D   ++ 
Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRVP 240

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGV 287
           L+S   +     P ++ T          F+     ++         DL KLL  L  RG 
Sbjct: 241 LESAFYQ---AGPALVATCAAASARER-FQDAGHELLALPSAEGHVDLHKLLLELAARGA 296

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRD 344
             +LVE G  +A +F    LVD   L+ +   +G    P    PL               
Sbjct: 297 NEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAQLRIDDIR 356

Query: 345 YFGSD 349
             G D
Sbjct: 357 AVGDD 361


>gi|116052093|ref|YP_789063.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115587314|gb|ABJ13329.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 373

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 124/365 (33%), Positives = 180/365 (49%), Gaps = 22/365 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ D  +M+ AL  +R  +  T  NP V C++VKDG V+G G     G PHAEV AL +
Sbjct: 1   MNAADPLYMARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q 
Sbjct: 61  AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E+E +     ++ R       + +K+A+S D    MA   S  ITG  +++
Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARS 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRA+S  +L G  T+LADD  L  R + L              P+R+++D   ++ 
Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRVP 240

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGV 287
           L+S   +     P ++ T          F+     ++         DL KLL  L  RG 
Sbjct: 241 LESAFYQ---AGPALVATCAAASARER-FQDAGHELLALPSAEGHVDLHKLLVELAARGA 296

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRD 344
             +LVE G  +A +F    LVD   L+ +   +G    P    PL               
Sbjct: 297 NEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLTRMADAAQLRIDDIR 356

Query: 345 YFGSD 349
             G D
Sbjct: 357 AVGDD 361


>gi|331001110|ref|ZP_08324741.1| riboflavin biosynthesis protein RibD [Parasutterella
           excrementihominis YIT 11859]
 gi|329569415|gb|EGG51193.1| riboflavin biosynthesis protein RibD [Parasutterella
           excrementihominis YIT 11859]
          Length = 355

 Score =  336 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 116/354 (32%), Positives = 179/354 (50%), Gaps = 17/354 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
           M  AL  ++        NP+V C+IVKD  +IG G T   G  HAEV AL +A   GE  
Sbjct: 1   MRRALELAKKARFNCPPNPAVGCVIVKDRRIIGEGFTQKTGEAHAEVMALRDAASRGESV 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
            GAT YVTLEPCSHYGR+PPCA  +    + RVV  + DP+  V+G+GL+ L + G+ + 
Sbjct: 61  AGATVYVTLEPCSHYGRTPPCALALKNAKVARVVAALKDPNPLVAGKGLKMLEEAGVKVE 120

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +   E +     +L RQ E    +  K+A+S D    +A   S  IT   ++   H  
Sbjct: 121 CGLEAEEAEEINRGFLKRQREGMPWVRTKMAMSVDGNTALANGKSQWITSEEARADGHFW 180

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R  S A+L G+GTVLAD+P++T R  G+    P+++++D +  L+ D KI +       +
Sbjct: 181 RGISGAVLTGLGTVLADNPQMTARFEGVT-RQPLKVVVDSNLSLNPDLKIFQGG---KTL 236

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           +V  + D V A  F  + + +I    +    DL+ L+  L  R +  + VE GA +  + 
Sbjct: 237 LVCAHYDIVRAENFESQGVEVIELPGKDGKVDLRALMRELAKREINDVHVEAGARLNGAL 296

Query: 303 INSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
               L+D  ++Y + + +G+G     +PS  ++               G DV L
Sbjct: 297 AMEGLIDEYLIYVAPVFLGDGRRLLDLPS-FKDLCEGVALEFTDIQKVGPDVRL 349


>gi|291522092|emb|CBK80385.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Coprococcus catus GD/7]
          Length = 371

 Score =  336 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 124/365 (33%), Positives = 193/365 (52%), Gaps = 15/365 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE- 65
           D R+M  AL  ++   G T+ NP V  +IVKDG VI +G     G  HAEV+A ++AG  
Sbjct: 8   DLRYMQMALDMAKLGRGYTNPNPMVGAVIVKDGQVIAKGYHHCCGQGHAEVEAFKDAGNQ 67

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +  GAT YVTLEPCSHYG++PPCA  IIE  I RVVV   DP+  V+GRG++ +   GI 
Sbjct: 68  DVTGATIYVTLEPCSHYGKTPPCADKIIEKKIGRVVVGALDPNPLVAGRGIEKIRNAGIE 127

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   ++  E       ++   V K   +  K A+S D  I      S  I+   S+ +VH
Sbjct: 128 VTTGVLAEESIKLNEIFMKYIVNKEPFVLYKSAMSLDGKIATVSGESQWISCEASRKEVH 187

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR Q  AI+VG  TVL DDP L CRL  ++   P+R+++D   ++ + ++++KTA    
Sbjct: 188 ELRHQYMAIMVGSQTVLDDDPMLNCRL--IEGKDPIRVVVDSSLRIPMTARLVKTARDIR 245

Query: 245 VII-VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299
            I+  T + D       +   + ++  + +    DLKKL   L    + S+L+EGGAA+A
Sbjct: 246 TIVACTPSADEKKIKDLQNAGVEVLSIEAKDGHVDLKKLTEELGRMQIDSILLEGGAALA 305

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE- 353
            +   + ++D + +Y +  +IG     +P+    +E          +     G+D+C+  
Sbjct: 306 AAAFGAGIIDKVQMYIAPKIIGGKTSRTPVGGKGVEHLSDAWQLKDITARNIGNDICITG 365

Query: 354 YIGKN 358
           YI + 
Sbjct: 366 YIRRE 370


>gi|15599251|ref|NP_252745.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
           PAO1]
 gi|9950253|gb|AAG07443.1|AE004822_3 riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
           PAO1]
          Length = 373

 Score =  336 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 124/365 (33%), Positives = 180/365 (49%), Gaps = 22/365 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ D  +M+ AL  +R  +  T  NP V C++VKDG V+G G     G PHAEV AL +
Sbjct: 1   MNAADPLYMARALELARQGLYSTQPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q 
Sbjct: 61  AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E+E +     ++ R       + +K+A+S D    MA   S  ITG  +++
Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARS 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRA+S  +L G  T+LADD  L  R + L              P+R+++D   ++ 
Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRVP 240

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGV 287
           L+S   +     P ++ T          F+     ++         DL KLL  L  RG 
Sbjct: 241 LESAFYQ---AGPALVATCAAASARER-FQDAGHELLALPSAEGHVDLHKLLLELAARGA 296

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRD 344
             +LVE G  +A +F    LVD   L+ +   +G    P    PL               
Sbjct: 297 NEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAQLRIDDIR 356

Query: 345 YFGSD 349
             G D
Sbjct: 357 AVGDD 361


>gi|254226773|ref|ZP_04920347.1| riboflavin biosynthesis protein RibD [Vibrio cholerae V51]
 gi|125620711|gb|EAZ49071.1| riboflavin biosynthesis protein RibD [Vibrio cholerae V51]
          Length = 367

 Score =  336 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 124/375 (33%), Positives = 190/375 (50%), Gaps = 29/375 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +AGE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+G+G+Q L
Sbjct: 61  MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   +++++ +     +L R      ++ LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLDADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R + L               P+R+ILD  
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG- 286
            +L  +  + +T   + + + +EN +    L    KN         DL++LL  L  +  
Sbjct: 241 HQLHPELALYQTPS-SVLRVASENAE----LCISAKN------GKLDLRELLAQLAQQQN 289

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVR 342
           V  + VE G+ +A S I  +LVD IILY +  ++G  G       G  E           
Sbjct: 290 VNQVWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIED 349

Query: 343 RDYFGSDVCLEYIGK 357
               G+D+ +    K
Sbjct: 350 CRMVGADLRIIATPK 364


>gi|258627340|ref|ZP_05722124.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
           mimicus VM603]
 gi|258580378|gb|EEW05343.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
           mimicus VM603]
          Length = 367

 Score =  336 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 125/376 (33%), Positives = 188/376 (50%), Gaps = 29/376 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +AGE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+GRG+Q L
Sbjct: 61  MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGRGVQML 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++E++ +     +L R      ++ LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227
           ++  V   RAQ+  IL    TVLAD+  L  R + L +             P R+ILD  
Sbjct: 181 ARKDVQRFRAQASTILSTSQTVLADNASLAVRWHDLPQSVQAQYAETDLRQPFRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRG 286
            +L  +  + +T+  + + + +EN D    L    +N         DL +LL  L     
Sbjct: 241 HQLHPELALYQTSS-SVLRVASENAD----LCISAEN------GKLDLHELLAQLAQQHN 289

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVR 342
           V  + VE G  +A S I  +LVD IILY +  ++G  G       G  E           
Sbjct: 290 VNQVWVEAGGQLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIED 349

Query: 343 RDYFGSDVCLEYIGKN 358
               G+D+ +    K+
Sbjct: 350 CRMVGADLRIIATPKS 365


>gi|254253006|ref|ZP_04946324.1| Pyrimidine reductase [Burkholderia dolosa AUO158]
 gi|124895615|gb|EAY69495.1| Pyrimidine reductase [Burkholderia dolosa AUO158]
          Length = 373

 Score =  336 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 182/368 (49%), Gaps = 25/368 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +   +  T+ NP V C+IVKDG VIG G T   G  HAEVQAL++
Sbjct: 2   FSDIDFAHMQRALALAARGMYTTAPNPRVGCVIVKDGSVIGEGFTQPAGQDHAEVQALKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G +  GAT YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L
Sbjct: 62  ARARGHDVAGATVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLTML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++  E       +++R    R  + +K A S D    +    S  ITG  
Sbjct: 122 RDAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H  RA++ AIL GIGTV  D+P LT R        P R+++D   +L LD+++++
Sbjct: 182 ARADGHAWRARACAILTGIGTVREDNPLLTVR-GIDTPRQPQRVLIDSRLELPLDARLLE 240

Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291
               AP++I     D      A A   +   I+         DL  +L+ L  RG+  L 
Sbjct: 241 G---APLLIFCGRLDAGSEARANALEARGAEIVSLANAHGKVDLPAMLSALGARGINELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344
           VE G  +  S +  + VD +++Y +  ++G           P+ L+             +
Sbjct: 298 VEAGHKLNGSLLREQCVDELLVYLAPSLLGADAAGMFDVAAPANLDA---RTRLAFHSVE 354

Query: 345 YFGSDVCL 352
             G D+ +
Sbjct: 355 RIGDDLRI 362


>gi|153834818|ref|ZP_01987485.1| riboflavin biosynthesis protein RibD [Vibrio harveyi HY01]
 gi|148868746|gb|EDL67820.1| riboflavin biosynthesis protein RibD [Vibrio harveyi HY01]
          Length = 374

 Score =  336 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 119/367 (32%), Positives = 175/367 (47%), Gaps = 28/367 (7%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            +S D   MS AL  ++  +  T+ NP+V C+IV+DG ++G G     G PHAEV A+  
Sbjct: 10  FTSQDFEMMSRALMLAKRGIYTTAPNPNVGCVIVRDGEIVGEGHHHRAGEPHAEVHAMRM 69

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG++ +GATAYVTLEPCSHYGR+PPCA+ +IE  + RVV  ++DP+ +V+GRG Q L   
Sbjct: 70  AGDKTQGATAYVTLEPCSHYGRTPPCAEGLIEAKVARVVCAMEDPNPKVAGRGFQMLRDA 129

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +   ++ESE       ++        +I LK+A S D    ++   S  IT   ++ 
Sbjct: 130 GVEVQVGLLESEAIELNKGFIKFMQTGMPYIQLKMAASLDGQSALSNGQSQWITSPKARQ 189

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V   RA S  IL    TV+ D+  L  R   L +             P R+I D   +L
Sbjct: 190 DVQRYRALSGGILSTSKTVIDDNASLNVRWEDLPKSVQTQYPQEDVRQPPRVIFDRQSQL 249

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTS 289
           S D K+  T      IIV++  D             +      DL   L  +     +  
Sbjct: 250 SDDLKLFNTDGER--IIVSQGGD---------MAPELDENGQIDLAATLRNVASEYHINH 298

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDY 345
           L VE GA +A S I + LVD +I+Y +  ++G  G        L E     +        
Sbjct: 299 LWVEAGATLASSLIKANLVDELIVYLAPKLMGSDGRGLIGALGLTEMAQVIDLTITDVRM 358

Query: 346 FGSDVCL 352
            G D+ +
Sbjct: 359 VGVDIRI 365


>gi|21241517|ref|NP_641099.1| 5-amino-6-uracil reductase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21106864|gb|AAM35635.1| riboflavin-specific deaminase [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 369

 Score =  336 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 123/359 (34%), Positives = 190/359 (52%), Gaps = 8/359 (2%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             S+ D R+M+ ALR +      T  NP V C+IV+DG+ +G G     G PHAEV AL 
Sbjct: 7   TASADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALR 66

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AGE ARGATAYVTLEPC+HYGR+PPCA  +IE G+RRVV  + DP  +V+G G   L +
Sbjct: 67  AAGELARGATAYVTLEPCAHYGRTPPCALALIEAGVRRVVAAMADPFPQVNGGGFALLRE 126

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI ++  +M+++ +     +L+R    R  + +K+  S D    +A   S  IT   ++
Sbjct: 127 AGIEVLSGVMQAQARTLNRGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITSADAR 186

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKT 239
             V   RA++ AIL G GTV+ADDP +T RL        P+R++LD   +      I + 
Sbjct: 187 ADVQRWRARAGAILTGAGTVMADDPSMTVRLGEDTPVVPPLRVVLDARLRTLACRNIRQG 246

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
              AP + +   +    +L   +     ++    DL  +L +L  RG+  + VEGGA ++
Sbjct: 247 D--APTLYLHGENVAAQSLDDAQFLAMPLHAGRFDLAAVLALLAERGINEVHVEGGATLS 304

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
            + + + LVD +++Y + +++G+   P      +E          +     G D+ L Y
Sbjct: 305 GALLQAGLVDELLVYMAPVLLGDTAKPLLAGLGIETMAQRAALQLLDVRQLGQDLRLRY 363


>gi|284006397|emb|CBA71633.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Arsenophonus nasoniae]
          Length = 369

 Score =  336 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 126/370 (34%), Positives = 186/370 (50%), Gaps = 18/370 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++FD +FMS AL  ++     TS NP+V C+IV+DG V+G G     G  HAE+ AL+ 
Sbjct: 1   MTTFDKQFMSRALSLAKQGRFTTSPNPNVGCVIVRDGEVVGEGFHCKTGEAHAEIYALQM 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE+A GATAYVTLEPCSHYG++PPCA  +I  GI+RVVV + DP+ +V+GRGL  L Q 
Sbjct: 61  AGEKANGATAYVTLEPCSHYGKTPPCADALISAGIQRVVVAMQDPNPQVAGRGLLKLQQA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI ++  ++  E +     +L R      ++ LK+A S D    +A   S  IT   ++ 
Sbjct: 121 GIEVIHGLLIDEAEQLNQGFLKRMRTGFPYVQLKLAASLDGRTALASGESKWITSPAARQ 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKL 230
            V   RAQ+ AIL    TVLAD+P L  R                   P+RI+LD + ++
Sbjct: 181 DVQSFRAQASAILTTSATVLADNPALNVRWKDFAPELQNIYPEESLRQPIRIVLDRNNQV 240

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
             +     T       ++  N          K+     Y    DL  L+  L  R + S+
Sbjct: 241 KPEH--FVTKSAGECWLIRSNPIAQNWFGDVKQITIPTYGKGIDLVLLMMQLAKRNINSI 298

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG---IPSP-LEEGYLEKNFMCVRRDYF 346
            VE G  +A + +   LVD +I+Y +  ++GE     I  P L++      F  +  +  
Sbjct: 299 WVESGPTLAGTLLTLGLVDELIVYVAPKILGESARGLINIPELQKLKDASAFEFINIELI 358

Query: 347 GSDVCLEYIG 356
             D+ L    
Sbjct: 359 DIDLRLTLRP 368


>gi|269962351|ref|ZP_06176701.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
           harveyi 1DA3]
 gi|269832847|gb|EEZ86956.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
           harveyi 1DA3]
          Length = 374

 Score =  336 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 119/367 (32%), Positives = 178/367 (48%), Gaps = 28/367 (7%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            +  D   MS AL+ ++  +  T+ NP+V C+IV+DG ++G G     G PHAEV A+  
Sbjct: 10  FTPQDFEMMSRALKLAKRGIYTTAPNPNVGCVIVRDGEIVGEGHHHRAGEPHAEVHAMRM 69

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG++A GATAYVTLEPCSHYGR+PPCA+ +I+  + RVV  ++DP+ +V+GRG Q L   
Sbjct: 70  AGDKAEGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMEDPNPKVAGRGFQMLRDA 129

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +   ++E+E       ++        ++ LK+A S D    ++   S  IT   ++ 
Sbjct: 130 GVEVQVGLLENEAIELNKGFIKFMQTGMPYVQLKMAASLDGQSALSNGQSQWITSPKARQ 189

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V   RA S  IL    TV+ D+  L  R + L               P R+ILD   +L
Sbjct: 190 DVQRYRALSGGILSTSKTVIDDNASLNVRWDDLPNSVKAHYPQDEVRQPPRVILDRQSQL 249

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTS 289
           S D K+  T      IIV++  D    L    +          DL   L  +  G  +  
Sbjct: 250 SDDLKLFNTDGER--IIVSQGGDIAPELDKNGQ---------VDLAATLQAVASGTHINH 298

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDY 345
           L VE GA +A S I + LVD +I+Y +  ++G  G       G  E     +        
Sbjct: 299 LWVEAGATLASSLIKANLVDELIVYLAPKLMGSDGRGLIGALGLTEMAHVIDLTITDVRM 358

Query: 346 FGSDVCL 352
            G D+ +
Sbjct: 359 VGVDIRI 365


>gi|169797510|ref|YP_001715303.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Acinetobacter baumannii AYE]
 gi|213155676|ref|YP_002317721.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
           AB0057]
 gi|215484945|ref|YP_002327186.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
           AB307-0294]
 gi|301346214|ref|ZP_07226955.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
           AB056]
 gi|301512963|ref|ZP_07238200.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
           AB058]
 gi|301595094|ref|ZP_07240102.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
           AB059]
 gi|332851510|ref|ZP_08433507.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
           6013150]
 gi|332866790|ref|ZP_08437194.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
           6013113]
 gi|169150437|emb|CAM88334.1| bifunctional protein [Includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (Riboflavin-specific deaminase);
           5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
           reductase) ] [Acinetobacter baumannii AYE]
 gi|213054836|gb|ACJ39738.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
           AB0057]
 gi|213986529|gb|ACJ56828.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
           AB307-0294]
 gi|332729963|gb|EGJ61294.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
           6013150]
 gi|332734398|gb|EGJ65518.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
           6013113]
          Length = 361

 Score =  335 bits (860), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 187/365 (51%), Gaps = 18/365 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M     D  +M  A+  ++  +  T  NP+V C+IVKD  VIG G     G PHAEV AL
Sbjct: 1   MSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDNQVIGEGFHPKAGQPHAEVFAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AGE+A+GATAYVTLEPC+HYGR+PPCA+ +++  +++VVV   DP+  V+G+G+Q L 
Sbjct: 61  RQAGEQAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILK 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI +   + E         +L        ++ LK+A S D    MA   S  ITG  +
Sbjct: 121 NAGIEVEIGICEDLAAQLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSK 235
           +  V   RA S A++ GI TV+ADD +L  R    ++      P R+ILD   +L L +K
Sbjct: 181 RQDVQHWRAISGAVITGIDTVIADDCQLNVRSLHNIDIETVVQPKRVILDRRGRLPLTAK 240

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEG 294
           I++       ++V       LA      ++ +I  + + LK LL  L  +  +  +L+E 
Sbjct: 241 ILEN---PETVMVMGPYRQELA------DLGVIQLEIQPLKTLLQTLSKQYQIYDVLIEA 291

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351
           GA ++ +F+   L+D +I Y +  ++G+       +  E    +  F  +       D+ 
Sbjct: 292 GATLSSAFLQEGLIDEMISYVAPTLLGQRARAMFNADFEYMAQQLRFKLLDVTQLDQDIR 351

Query: 352 LEYIG 356
           L  I 
Sbjct: 352 LRLIP 356


>gi|254787586|ref|YP_003075015.1| riboflavin biosynthesis protein RibD [Teredinibacter turnerae
           T7901]
 gi|237683563|gb|ACR10827.1| riboflavin biosynthesis protein RibD [Teredinibacter turnerae
           T7901]
          Length = 363

 Score =  335 bits (860), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 119/364 (32%), Positives = 183/364 (50%), Gaps = 11/364 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S+ D  FM  ALR +   +  T+ NP V C++VKDG+VIG G     G PHAEV AL
Sbjct: 1   MDFSTADTVFMQQALRLAEEGLNTTTPNPRVGCVLVKDGVVIGEGYHHRAGEPHAEVNAL 60

Query: 61  EEA--GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           +     ++  GATAYVTLEPCSH G++ PCA  +++ GI R+V  ++DP+  V+GRGL  
Sbjct: 61  KSVIDRQQLAGATAYVTLEPCSHTGKTGPCADALVDAGIGRLVYAMEDPNPLVAGRGLDK 120

Query: 119 LSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L + G++VD  ++E E       ++ R       +  K+A+S D    M    S  ITG 
Sbjct: 121 LQRAGVVVDGPLLEEEALSLNLGFVKRMRTGLPLVRCKLAMSLDGRTAMRSGESKWITGP 180

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            ++  V  LRA+S AI+ G+ +VL DDP LT RL    E  P+R+I+D   ++   +++ 
Sbjct: 181 SARADVQKLRARSCAIITGVESVLLDDPLLTVRLPEC-ERQPIRVIVDSQLRVDPSAEVF 239

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGA 296
           +       ++ T +    L        +        DL++LL  L        +L+E GA
Sbjct: 240 RQP--GTTLVATCDAAKALNSELDTWPL-PEKMGHVDLRELLLGLAEHYQCNEVLLETGA 296

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLE 353
            +A +F+ + LVD +I+Y +  ++G    P    P+                 G D  + 
Sbjct: 297 KLAGAFVAAGLVDELIVYVAAKLMGSDARPLLELPILTMGASLELTIKDVRAVGPDWRIT 356

Query: 354 YIGK 357
            I  
Sbjct: 357 AIPD 360


>gi|239831592|ref|ZP_04679921.1| riboflavin biosynthesis protein RibD [Ochrobactrum intermedium LMG
           3301]
 gi|239823859|gb|EEQ95427.1| riboflavin biosynthesis protein RibD [Ochrobactrum intermedium LMG
           3301]
          Length = 375

 Score =  335 bits (860), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 167/362 (46%), Positives = 229/362 (63%), Gaps = 7/362 (1%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           V+S D RFM A +R++R H GLT TNPSV  +IVKDG+++GRGVTA GG PHAE QAL E
Sbjct: 13  VTSDDVRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAE 72

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ ARGATAYVTLEPC+H+GR+PPCA+ ++  G+ RVV    DPD RVSG+G   L + 
Sbjct: 73  AGDAARGATAYVTLEPCAHHGRTPPCAETLVRAGVARVVAAATDPDERVSGKGFAILREA 132

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +V  ++  +    L  YL R  +KR  + LK+A+S D MIG  G G V ITG I++ 
Sbjct: 133 GIEVVPGILADQAADDLAGYLNRSAKKRPEVILKLALSADGMIGRRGEGQVAITGPIARA 192

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           Q H+LRAQ+D IL+GI T LADDP L CRL GL + SP+R++LD   +L L S++++T  
Sbjct: 193 QSHILRAQTDVILIGIETALADDPVLNCRLRGLGQRSPVRVVLDGGLRLPLSSRLVQTTD 252

Query: 242 LAPVIIVT-ENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGA 296
             P+ I   E   P            I+  +  D    L +L+  L  +G++S+LVEGGA
Sbjct: 253 AQPLWIACGEEASPERRYELTAAGCRILATEADDCRIALPELMDDLAAQGISSVLVEGGA 312

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
            VA SF++  LVD + ++RS + IG   G+     E ++   F  +R+  +G D   EY+
Sbjct: 313 GVAKSFLDEGLVDRLAIFRSPVEIGSEHGVAVDGLETHIADEFKILRQARYGDDAYAEYV 372

Query: 356 GK 357
            K
Sbjct: 373 RK 374


>gi|323527043|ref|YP_004229196.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1001]
 gi|323384045|gb|ADX56136.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1001]
          Length = 385

 Score =  335 bits (860), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 188/368 (51%), Gaps = 25/368 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  ++  +  T  NP V C+IV++G VIG G T   G  HAE++A+++
Sbjct: 2   FSQTDFVHMERALALAKRGMYTTDPNPRVGCVIVQNGEVIGEGFTQPAGQDHAEIRAMKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + RGAT YVTLEPCSH+GR+PPCA  +IE  + RVV  ++DP+ +VSGRGL  L
Sbjct: 62  ARSRGHDLRGATVYVTLEPCSHFGRTPPCANALIEAQVARVVAAMEDPNPQVSGRGLAML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++ +E +     +++R    R  + +K+A S D   G+    S  ITG  
Sbjct: 122 RDAGIEVRCGLLANEAQELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGVSQWITGEA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H  RA++ AIL GIGTV  DDP +T R        P R+++D   ++S  ++I+ 
Sbjct: 182 ARADGHAWRARASAILTGIGTVREDDPRMTVRAVD-TPRQPQRVLIDSQLEVSPQAQIL- 239

Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291
               AP +I   N D        A R +   I+         DL  +L +L  R V  L 
Sbjct: 240 --AGAPTLIFCGNLDERHSERVQALRNRGAEIVEMANAAGKVDLPGMLKVLGERQVNELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344
           VE G  +  S +    VD +++Y +  ++G           P+ L EG ++  F  V R 
Sbjct: 298 VEAGYKLNGSLLREGCVDELLVYLAPSLLGNDSMSMFNLSAPATL-EGRVKLAFHNVER- 355

Query: 345 YFGSDVCL 352
             G D+ +
Sbjct: 356 -IGDDLRI 362


>gi|262190240|ref|ZP_06048514.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae CT 5369-93]
 gi|262033885|gb|EEY52351.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae CT 5369-93]
          Length = 365

 Score =  335 bits (860), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 124/372 (33%), Positives = 184/372 (49%), Gaps = 28/372 (7%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A+ +
Sbjct: 2   FTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+G+G+Q L   
Sbjct: 62  AGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E++ +     +L R       + LK+A S D    +A   S  IT   ++ 
Sbjct: 122 GIEVEVGLLEADARALNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPAARK 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V   RAQ+ AIL    TVLAD+  L  R + L               P+R+ILD   +L
Sbjct: 182 DVQRFRAQASAILSTSQTVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQHQL 241

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTS 289
             +  + +T   +PV+ V   +  +   A   K          DL++LL  L     V  
Sbjct: 242 HPELALYQTP--SPVLRVASENAELCISAENGK---------LDLRELLAQLAQQHNVNQ 290

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDY 345
           L VE G+ +A S I  +LVD IILY +  ++G  G       G  E              
Sbjct: 291 LWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRM 350

Query: 346 FGSDVCLEYIGK 357
            G+D+ +    K
Sbjct: 351 VGADLRIIATPK 362


>gi|169634649|ref|YP_001708385.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Acinetobacter baumannii SDF]
 gi|169153441|emb|CAP02583.1| bifunctional protein [Includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (Riboflavin-specific deaminase);
           5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
           reductase) ] [Acinetobacter baumannii]
          Length = 361

 Score =  335 bits (860), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 187/365 (51%), Gaps = 18/365 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M     D  +M  A+  ++  +  T  NP+V C+IVKD  VIG G     G PHAEV AL
Sbjct: 1   MSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDNQVIGEGFHPRAGQPHAEVFAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AGE+A+GATAYVTLEPC+HYGR+PPCA+ +++  +++VVV   DP+  V+G+G+Q L 
Sbjct: 61  RQAGEQAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILK 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI +   + E         +L        ++ LK+A S D    MA   S  ITG  +
Sbjct: 121 NAGIEVEIGICEDLAAQLNQGFLKAMSSGMPYVRLKVASSLDGRTAMASGESKWITGSAA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSK 235
           +  V   RA S A++ GI TV+ADD +L  R    ++      P R+ILD   +L L +K
Sbjct: 181 RQDVQHWRAISGAVITGIETVIADDCQLNVRPLHNVDIETVAQPKRVILDRRGRLPLTAK 240

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEG 294
           I++       ++V       LA      ++ +I  + + LK LL  L  +  +  +L+E 
Sbjct: 241 ILEN---PETVMVMGPYRQELA------DLGVIQLEIQPLKTLLQTLSKQYQIYDVLIEA 291

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351
           GA ++ +F+   L+D +I Y +  ++G+       +  E    +  F  +       D+ 
Sbjct: 292 GATLSSAFLQEGLIDEMISYVAPTLLGQSARAMFNADFEYMAQQLRFKLLDVTQLDQDIR 351

Query: 352 LEYIG 356
           L  I 
Sbjct: 352 LRLIP 356


>gi|308048548|ref|YP_003912114.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           ;5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Ferrimonas balearica DSM 9799]
 gi|307630738|gb|ADN75040.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           ;5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Ferrimonas balearica DSM 9799]
          Length = 373

 Score =  335 bits (860), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 120/376 (31%), Positives = 190/376 (50%), Gaps = 26/376 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S+ DAR M+ AL  +R     T  NP V C++V+DG V+G G     G PHAEV AL  
Sbjct: 2   FSTDDARHMARALELARRGQLTTRPNPRVGCVLVRDGEVVGEGFHIRAGGPHAEVHALRA 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG++ARGATAYVTLEPCSHYGR+PPC+Q +I+ G+ RVV  + DP+ +V+GRGL  L   
Sbjct: 62  AGDKARGATAYVTLEPCSHYGRTPPCSQALIDAGVARVVAAMVDPNPQVAGRGLAMLEAA 121

Query: 123 GII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI     +M +E +     ++ R    R  + +K+A S D    +A   S  ITG  ++ 
Sbjct: 122 GIETQHGLMANEAEAVNPGFMKRMRTGRPFVRVKLAASLDGRTALANGQSKWITGPEARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFKLS 231
            V  LRA SDA++ G  +VLAD+P +  R   L              P+R+++D   +L+
Sbjct: 182 DVQRLRAISDAVITGADSVLADNPSMNVRHAELGHWQSRISEADLQQPLRVVVDGKARLA 241

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRG 286
              K++ +    P+++ +              ++++            L  LL  L  + 
Sbjct: 242 PPLKLLDSD--GPLMLASLRGYD----CHWPASVSVWPAADNGEGKVALTALLDELGRQQ 295

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVR 342
           +  +LVE G+A+A +FI++ L D + LY++  ++G           ++      +     
Sbjct: 296 INEVLVEAGSALAGAFISAGLWDELWLYQAPKLMGSEARGLLALPGVDTMAEVPSLTIQD 355

Query: 343 RDYFGSDVCLEYIGKN 358
               G+D+ L    + 
Sbjct: 356 VRRVGADLRLILTRQE 371


>gi|149187995|ref|ZP_01866290.1| pyrimidine reductase [Vibrio shilonii AK1]
 gi|148837983|gb|EDL54925.1| pyrimidine reductase [Vibrio shilonii AK1]
          Length = 369

 Score =  335 bits (860), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 120/367 (32%), Positives = 180/367 (49%), Gaps = 27/367 (7%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S+ D + MS AL  ++     T+ NP+V C+I  +  V+G G     G PHAEV AL  
Sbjct: 4   FSAIDYQMMSRALELAKRGRFTTAPNPNVGCVITLNNEVVGEGYHKKAGEPHAEVHALRM 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A E A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+GRG   L + 
Sbjct: 64  AAERAKGATAYVTLEPCSHYGRTPPCAEGLIKAGVSKVICAMSDPNPQVAGRGFNMLREA 123

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E + +     +L +       + LK+A S D    +A   S  ITG  ++ 
Sbjct: 124 GIEVSVGLLEQDARALNPGFLKKMETGMPFVQLKMAASLDGQTALANGISQWITGPEARR 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKL 230
            V   RAQS AIL    TV+ D+  L  R + L  H            P R+ILD    L
Sbjct: 184 DVQAYRAQSGAILSTSQTVVEDNASLNVRWDELPSHVTDVIKPDELRQPTRVILDRQNAL 243

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-RGVTS 289
           S + K+ +          +E D   +A A    N+ +   +  DL + L  L   + +  
Sbjct: 244 SRELKLFQ----------SEGDIIRVAQAGGDLNVTMNSANQLDLAETLQGLAKDQQINH 293

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDY 345
           + +E GA +A S I  +LVD +I+Y +  ++G  G        L E              
Sbjct: 294 VWIEAGATLAGSMIQQQLVDELIVYLAPKLMGADGRGLIGALGLTEMQDVIELDIKDIRM 353

Query: 346 FGSDVCL 352
            GSD+ +
Sbjct: 354 VGSDIRI 360


>gi|225077298|ref|ZP_03720497.1| hypothetical protein NEIFLAOT_02357 [Neisseria flavescens
           NRL30031/H210]
 gi|224951442|gb|EEG32651.1| hypothetical protein NEIFLAOT_02357 [Neisseria flavescens
           NRL30031/H210]
          Length = 370

 Score =  335 bits (859), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 126/369 (34%), Positives = 191/369 (51%), Gaps = 17/369 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S+ D + M  AL  ++     TS NP V C+I     ++G+G     G PHAEV AL +
Sbjct: 2   FSALDTQMMQTALELAKLGRFSTSPNPRVGCVIAHGAQIVGQGFHVKAGEPHAEVHALRQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  A+GATAYVTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   
Sbjct: 62  AGAAAKGATAYVTLEPCSHYGRTPPCAEALVHSGVTRVVAAMTDPNPLVAGKGLSMLEAA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  +  ++E++ +     +L+R    R  + LK A S D    ++   S  ITG  ++ 
Sbjct: 122 GIRTESGLLEAQARELNRGFLSRIERGRPFVRLKCAASLDGKTALSDGRSFWITGEAARK 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V +LRA+S A+L GIGTVLAD+P+L  R +      P RI+LD   ++ LD  ++    
Sbjct: 182 DVQILRAESCAVLTGIGTVLADNPKLNVR-SFPTLRQPARIVLDSRLQIPLDCHLVTDTE 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296
              VI+   +D+  L      ++I II          +L  L+  L   G   +LVE G+
Sbjct: 241 SPTVIVTLSSDEQRLQALSAFEHIRIIRPSEHINGRINLLSLMPQLAELGFGEVLVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRDYFGSD 349
            +A +F+   LVD I+LY++  ++G G         P+ L  G     +     +    D
Sbjct: 301 TLASAFLKDDLVDEIVLYQAPKLLGAGKPLFSLSENPAALLSGG---PWQSQSVEIIVQD 357

Query: 350 VCLEYIGKN 358
           +      K+
Sbjct: 358 IKWVLRKKS 366


>gi|145588458|ref|YP_001155055.1| riboflavin biosynthesis protein RibD [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046864|gb|ABP33491.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 371

 Score =  335 bits (859), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 191/371 (51%), Gaps = 19/371 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D ++M  AL  ++  + L + NP V C+IVKDG VIGRG T   G  HAE+QA+ +A
Sbjct: 3   SAVDHQWMGEALGEAQKALYLANPNPRVGCVIVKDGQVIGRGHTQRVGGAHAEIQAIADA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G++  G+T YVTLEPCSH GR+PPC   ++     +V+V + DP+  VSG GL  L+
Sbjct: 63  KANGKDIAGSTIYVTLEPCSHTGRTPPCVNALVVARPAKVIVSMLDPNPLVSGGGLARLT 122

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI +   ++ESE +     +++R       + +KIA S D    +    S  ITG ++
Sbjct: 123 DAGIEVQCGLLESEAQAINRGFISRMTRGLPWVRMKIAASLDGKTALPNGQSQWITGPLA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H  RAQ+ AI+ G+GTV  DDP L  R        P RII+D   +   +++I+  
Sbjct: 183 RADGHHWRAQACAIVTGVGTVKEDDPSLNVREVS-THRQPWRIIVDSKLETPPNAQILND 241

Query: 240 ALLAPVIIVTENDDPV----LALAFRKKNINIIYC----DCRDLKKLLTILV-GRGVTSL 290
              + VIIV    D V     A  F+K+ I +I         DL KL T L   R +  +
Sbjct: 242 LQDSGVIIVCAALDDVDKVAKAKQFQKRGIEVIAFANPQGKVDLPKLFTYLAQEREMNEI 301

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYF 346
            +E G  +  S +    VD ++LY +   +GEG     +P+ L      +++  + +   
Sbjct: 302 HIESGFKLNGSMLREGCVDELLLYYAPFFMGEGIGMANVPT-LPNLSTREDWRILDQSMI 360

Query: 347 GSDVCLEYIGK 357
           G+D+ +  I  
Sbjct: 361 GTDLRIRLIKN 371


>gi|167837547|ref|ZP_02464430.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
           MSMB43]
          Length = 374

 Score =  335 bits (859), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 114/362 (31%), Positives = 175/362 (48%), Gaps = 13/362 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +   +  T+ NP V C+IVKD +VIG G T   G  HAEVQAL++
Sbjct: 2   FSESDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + R AT YVTLEPCSH+GR+PPC+  +I+  + +VV  ++DP+ +VSGRGL  L
Sbjct: 62  ARARGNDLRDATVYVTLEPCSHFGRTPPCSHALIDARVGKVVAAMEDPNPQVSGRGLAML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++  E       +++R    R  + +K A S D    +A   S  ITG  
Sbjct: 122 RDAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H  RA++ A+L GIGTV  DDP+L  R        P R+++D    + L +++++
Sbjct: 182 AREDGHKWRARACAVLTGIGTVREDDPQLNVR-GVDTPRQPRRVLIDSRLDIPLAARLLE 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEG 294
              L       ++     A A R +   I+         DL  +L  L  RG+  L VE 
Sbjct: 241 GGSLLIFCGALDSQSEARAQALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           G  +  S +  R VD +++Y +  ++G         +                +  G D+
Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLGADAAAMFDLAAPASLVDRTRLAFHSVERVGDDL 360

Query: 351 CL 352
            +
Sbjct: 361 RI 362


>gi|294667125|ref|ZP_06732350.1| 5-amino-6-uracil reductase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292603135|gb|EFF46561.1| 5-amino-6-uracil reductase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 369

 Score =  335 bits (859), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 122/357 (34%), Positives = 188/357 (52%), Gaps = 8/357 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D R+M+ ALR +      T  NP V C+IV+DG  +G G     G PHAEV AL  A
Sbjct: 9   SADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGACVGEGFHQRAGGPHAEVFALRAA 68

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPC+HYGR+PPCA  +IE G+ RVV  + DP  +V+G G   L + G
Sbjct: 69  GELARGATAYVTLEPCAHYGRTPPCALALIEAGVMRVVAAMADPFPQVNGGGFALLREAG 128

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I ++  +M+++ +     +L+R    R  + +K+  S D    +A   S  IT   ++  
Sbjct: 129 IDVLSGVMQAQARTLNRGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITSADARAD 188

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           V   RA++ AIL G GTV+ADDP +T R+        P+R++LD   +      I +   
Sbjct: 189 VQRWRARAGAILTGAGTVMADDPSMTVRMGEDSPVVPPLRVVLDAGLRTLACRNIRQGD- 247

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            AP + +   D    +L   +     ++    DL  +L +L  RG+  + VEGGA ++ +
Sbjct: 248 -APTLYLHGEDVSAPSLDDAQFLAMPLHAGRFDLAAVLALLAERGINEVHVEGGATLSGA 306

Query: 302 FINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
            + + LVD +++Y + +++G+   P      +E          +     G D+ L Y
Sbjct: 307 LLQAGLVDELLVYMAPVLLGDSAKPLLAGLGIETMAQRAALQLLDVRQLGQDLRLRY 363


>gi|157691490|ref|YP_001485952.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidine
           deaminase [Bacillus pumilus SAFR-032]
 gi|157680248|gb|ABV61392.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidine
           deaminase [Bacillus pumilus SAFR-032]
          Length = 361

 Score =  335 bits (859), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 114/360 (31%), Positives = 189/360 (52%), Gaps = 10/360 (2%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M  A+  ++   G TS NP V  +IV+ G ++G G     G PHAE+ AL+ A E
Sbjct: 3   DDVFYMELAIANAKAMKGQTSPNPLVGAVIVQQGEIVGMGAHMKAGEPHAEIHALQMARE 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +A+GA  YVTLEPCSHYG++ PC + II+ G++RVV+   DP+  V+G+G+  L Q GI 
Sbjct: 63  KAKGAHLYVTLEPCSHYGKTGPCTEAIIKSGVKRVVIATQDPNPLVAGKGMTMLKQAGIE 122

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           VD  + + E       +         ++ LK A+S D  I  A   S  ITG  ++ +V 
Sbjct: 123 VDEGICKQEADRLNVPFFHFIQSDFPYVILKSAISLDGKIATADLESKWITGTEARKEVQ 182

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR ++DA++ G+ T++ DD  L  + + +    P+R+ILD   ++ L +K +       
Sbjct: 183 QLRQEADAVITGVETIIQDDAGLIVKDSNMT--QPIRVILDSTLRIPLHAKCLTDRRAET 240

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           +I ++   D        +K   +         D+  +L +L  R V S+LVE G +V+ S
Sbjct: 241 IICISRMYDQKKYELLIEKGHQVYITSGEERTDIHDVLRMLKERSVMSVLVEAGGSVSAS 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           F+ + LV+  ++Y + ++IG    P+  E   ++K    +R     +DV    +GK+  +
Sbjct: 301 FLEASLVNEAVIYMAPLLIGGKNAPTFFEGDGVKKLKEAIRP----ADVEYSMVGKDFKM 356


>gi|83955709|ref|ZP_00964289.1| riboflavin biosynthesis protein RibD [Sulfitobacter sp. NAS-14.1]
 gi|83840003|gb|EAP79179.1| riboflavin biosynthesis protein RibD [Sulfitobacter sp. NAS-14.1]
          Length = 367

 Score =  335 bits (859), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 129/364 (35%), Positives = 187/364 (51%), Gaps = 11/364 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           S DARFM+ AL   R   G    NP+V C+IV+ G ++GRG T  GG PHAE QAL +AG
Sbjct: 2   SDDARFMALALSLGRRGQGAVWPNPAVGCVIVQQGRIVGRGWTQPGGRPHAEPQALRQAG 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
             A+GAT YVTLEPC+H G++PPCA  ++     RVV+   D D RVSG+G+  L   GI
Sbjct: 62  PAAQGATVYVTLEPCAHTGKTPPCADALVAAKPARVVIACTDRDPRVSGKGIAILRAAGI 121

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
           IVD  ++E E +     +  R  E R  +TLK+A S D  I  A   S  IT   ++  V
Sbjct: 122 IVDVGVLEDEARADHLGFFLRVDEGRPMVTLKLANSFDGRIATASGESQWITAPPARRVV 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H +R++ DA++VG GT   DDP LT R  G     P RI++     + L+  + +TA   
Sbjct: 182 HAMRSRHDAVMVGGGTARQDDPSLTVRDLGTT-RQPTRIVVSNGLDIPLNGALARTANDI 240

Query: 244 PVIIVTENDDP-VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298
           P+I+      P  L   +      +I C  +    D   +L  L   G+T +  EGG  +
Sbjct: 241 PLILCHGPKAPAELIGTWESLGATLISCAPKMGQIDADDMLQQLGRHGLTRIFCEGGGGL 300

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           A + + + LVD ++ + + + +G  G+P+     L+       F        G D+   +
Sbjct: 301 AATLLKADLVDQLVGFTAGLALGADGLPAIAPLQLQRLAQAPRFTLTETSRIGPDLLHIW 360

Query: 355 IGKN 358
              N
Sbjct: 361 SRSN 364


>gi|163738649|ref|ZP_02146063.1| riboflavin biosynthesis protein RibD [Phaeobacter gallaeciensis
           BS107]
 gi|161387977|gb|EDQ12332.1| riboflavin biosynthesis protein RibD [Phaeobacter gallaeciensis
           BS107]
          Length = 358

 Score =  335 bits (859), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 129/356 (36%), Positives = 186/356 (52%), Gaps = 11/356 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           MS AL   R   G    NP+V C+IV+DG ++GRG T  GG PHAE QAL++AG+ ARGA
Sbjct: 1   MSLALSLGRRGQGNCWPNPAVGCVIVRDGRIVGRGWTQPGGRPHAEPQALQQAGDLARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YV+LEPCSH G++PPCAQ +I  G+ RVV  ++D D RVSG G   L   GI +   +
Sbjct: 61  TVYVSLEPCSHTGKTPPCAQALINAGVARVVAAIEDSDPRVSGHGFAMLRDAGIPVTTGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
                      +  +  + R  +TLK+A S D  I  A   S  ITG  ++  VH +RA+
Sbjct: 121 CSDAAAWDHAGFFLKTEQGRPFVTLKLASSFDGRIATAAGESKWITGSEARRAVHAMRAR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DA++VG GT  ADDP LT R  G+    P+R+++  H  L L  ++ ++A   PV I  
Sbjct: 181 HDAVMVGGGTARADDPSLTVRDLGV-ARQPVRVVISRHLDLPLMGQLARSARDIPVWICH 239

Query: 250 -ENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHSFIN 304
               D     A+      ++ C    L+     +L  L   G+T +  EGG+A+A S + 
Sbjct: 240 GAGADAERLRAWEGLGAVLLPCAADGLQLDAGDVLQQLGQAGLTRVFCEGGSALAASLLA 299

Query: 305 SRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
             LVD +I + + + IG  G+ S     L+       F  +     G+D+   +  
Sbjct: 300 QDLVDELIGFTAGLGIGGDGLSSIGSLGLDALAEAPRFDLIDVRPVGADIQHRWTR 355


>gi|260434096|ref|ZP_05788067.1| riboflavin biosynthesis protein RibD [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417924|gb|EEX11183.1| riboflavin biosynthesis protein RibD [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 366

 Score =  335 bits (859), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 132/365 (36%), Positives = 202/365 (55%), Gaps = 11/365 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++  D R+M+ AL   R   G+   NP+V C++VK+G ++GRG T  GG PHAE  AL +
Sbjct: 1   MTDTDKRYMALALSLGRRGQGMCWPNPAVGCVVVKNGRIVGRGWTQPGGRPHAETVALAQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  ARG+TAYV+LEPC+H+G++PPCAQ +I+ G+ RVV  ++D D RV+G G + L   
Sbjct: 61  AGLLARGSTAYVSLEPCAHHGKTPPCAQALIDAGVARVVSAIEDSDPRVAGLGFEMLRAA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +   ++  +       +LTR  + R  +TLK+A S D  I  +   S  IT   S+ 
Sbjct: 121 GVDVTTGVLADQAARDHAGFLTRTEQGRPFVTLKLACSFDGRIATSTGQSKWITSPQSRR 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH +RA+ DA++VG GT  ADDP LT R  G+ +  P+R+++  H  + L  ++ ++A 
Sbjct: 181 VVHAMRARHDAVMVGAGTARADDPSLTVRDLGVAQ-QPVRVVVSRHLDVPLLGQLARSAS 239

Query: 242 LAPVIIVTE-NDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
             PV +    + DP  A A+R     +I C  +    D   LL  L   G+T +  EGG+
Sbjct: 240 EVPVWLCHGPSPDPERARAWRGLGAKLIPCALQDHHIDPADLLQQLGQEGLTRVFCEGGS 299

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
           A+A S + + LVD ++ + + + IG  G+P+     L E      F  V     G DV  
Sbjct: 300 ALAASLLAADLVDELVGFTAGMAIGAEGLPAIGAMGLSELADAPRFDLVETKIVGPDVLQ 359

Query: 353 EYIGK 357
            +   
Sbjct: 360 VWRRP 364


>gi|170693630|ref|ZP_02884788.1| riboflavin biosynthesis protein RibD [Burkholderia graminis C4D1M]
 gi|170141412|gb|EDT09582.1| riboflavin biosynthesis protein RibD [Burkholderia graminis C4D1M]
          Length = 385

 Score =  335 bits (859), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 131/368 (35%), Positives = 190/368 (51%), Gaps = 25/368 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +R  +  T  NP V C+IVK+G VIG G T   G  HAE++A+++
Sbjct: 2   FSQTDFVHMERALALARRGMYTTDPNPRVGCVIVKNGEVIGEGFTQPAGQDHAEIRAMKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + RGATAYVTLEPCSH+GR+PPCA  +IE  + RVV  ++DP+ +VSGRGL  L
Sbjct: 62  ARSRGHDLRGATAYVTLEPCSHFGRTPPCANALIEAQVARVVAAMEDPNPQVSGRGLAIL 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++ +E       +++R    R  + +K+A S D   G+    S  ITG  
Sbjct: 122 RDAGIEVRCGLLANEAHELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGVSQWITGEA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H  RA++ AIL GIGTV  DDP +T R        P R+++D   ++S  ++I+ 
Sbjct: 182 ARADGHAWRARASAILTGIGTVREDDPRMTVRAVD-TPRQPQRVLIDSQLEVSPHAQIL- 239

Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291
               AP +I   N D      A A R++   I+         DL  LL +L  R V  L 
Sbjct: 240 --AGAPTLIFCGNLDERHRERAEALRERGAEIVQMANAAGKVDLPGLLKVLGERQVNELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344
           VE G  +  S +    VD +++Y +  ++G         G P  L EG ++  F  V R 
Sbjct: 298 VEAGYKLNGSLLREGCVDELLVYLAPSLLGIDSMSMFNLGAPETL-EGRVKLAFHNVER- 355

Query: 345 YFGSDVCL 352
             G D+ +
Sbjct: 356 -IGEDLRI 362


>gi|261253738|ref|ZP_05946311.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio orientalis CIP 102891]
 gi|260937129|gb|EEX93118.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio orientalis CIP 102891]
          Length = 368

 Score =  335 bits (859), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 121/376 (32%), Positives = 183/376 (48%), Gaps = 29/376 (7%)

Query: 1   MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP  +  D   MS A+  ++  +  T+ NP+V C+IV+   ++G G     G PHAEV A
Sbjct: 1   MPLFTPQDFTMMSRAIELAKGGIYTTAPNPNVGCVIVQGDEIVGEGFHYRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           L  AG+ A GATAYVTLEPCSHYGR+PPCA+ +I+  + +V+  ++DP+ +V+GRG+Q L
Sbjct: 61  LRMAGDRAVGATAYVTLEPCSHYGRTPPCAEGLIKAKVAKVICAMEDPNPKVAGRGIQML 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++E + +    A++ +       + LK+A S D    +A   S  IT   
Sbjct: 121 RDAGITVEVGLLEQQAESLNPAFIKQMKTGMPFVQLKMAASIDGQTALANGQSQWITSPQ 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPH 227
           ++  V   RA+S AIL    TV+ D+  L  R + L           +   P+R+ILD +
Sbjct: 181 ARQDVQKYRAKSGAILSTSKTVIEDNASLNVRWDDLPLSLQEAYSQQELRQPVRVILDRN 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRG 286
            +L+ D K++ T      IIV E  D    L   +           DL    + L     
Sbjct: 241 HQLTSDLKLMSTEGER--IIVAEGQDLEPILNDEQ---------LIDLAATFSALAKQHH 289

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVR 342
           +  L VE GA +A S I + LVD +ILY +  ++G           LE      +     
Sbjct: 290 INHLWVEAGATLASSLIKANLVDELILYLAPKIMGSDGRGLLGALGLESMAETIDLNVKD 349

Query: 343 RDYFGSDVCLEYIGKN 358
               G D+ +    KN
Sbjct: 350 VRQVGQDIRITATLKN 365


>gi|255261262|ref|ZP_05340604.1| riboflavin biosynthesis protein RibD [Thalassiobium sp. R2A62]
 gi|255103597|gb|EET46271.1| riboflavin biosynthesis protein RibD [Thalassiobium sp. R2A62]
          Length = 363

 Score =  335 bits (859), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 141/361 (39%), Positives = 187/361 (51%), Gaps = 12/361 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DAR+M+ AL   R  +G    NPSV C+IVKDG V+GRG T  GG PHAE  AL  AG  
Sbjct: 3   DARWMALALELGRRGLGRVWPNPSVGCVIVKDGRVVGRGWTQDGGRPHAETHALAAAGTA 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARG+  YVTLEPCSHYG +PPCAQ +I+ G+ RV+V   D D RVSGRG   L   GI +
Sbjct: 63  ARGSDVYVTLEPCSHYGHTPPCAQALIDAGVSRVIVAAGDSDPRVSGRGYAMLRDAGICV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              + ESE +  L  +  R    R  +TLK+A S D  I  A   S  ITG  ++  VH+
Sbjct: 123 DIGLCESEARNDLAGFFKRIETGRPWVTLKLANSFDGRIATASGDSQWITGADARRYVHM 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            RA+ DA++VG GTV AD+P L  R  G+    P+R++L     L  D K+  TA   PV
Sbjct: 183 SRARHDAVMVGAGTVRADNPSLNVRDLGV-ARQPIRVVLSRKLDLPTDCKLAVTAGDPPV 241

Query: 246 IIVTENDDPV-LALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVA 299
            I+  +D        +     N +          D    L  L  +G+T +  EGG A+A
Sbjct: 242 WILHSDDASQSRIEDWTGHGANCLAAGPEAHRQLDPSACLQTLGAQGLTRVYCEGGGALA 301

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLEYI 355
            S + + L+D +I Y + + IG  G PS    G         F  +     G+DV   + 
Sbjct: 302 ASLLGAGLIDEVIGYTAGVAIGAEGTPSLGALGLSVLAEAPRFQLLETRAIGADVLHRWR 361

Query: 356 G 356
            
Sbjct: 362 P 362


>gi|225848913|ref|YP_002729077.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644745|gb|ACN99795.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 366

 Score =  335 bits (859), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 121/359 (33%), Positives = 186/359 (51%), Gaps = 15/359 (4%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
             +M+ AL  ++   G T  NP+V  +IVKDG +IG+G     G PHAE +A+++A   G
Sbjct: 5   EYYMNIALDLAKERKGYTHPNPTVGAVIVKDGKIIGKGFHYKAGMPHAEREAIKDAKSKG 64

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            + RG+T +V+LEPC HYG++PPC + I+E GI +VVV   DP+  V+G+G++ L QKG+
Sbjct: 65  FDLRGSTIFVSLEPCCHYGKTPPCTEAILEEGISKVVVATLDPNPLVAGKGVEILKQKGV 124

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +V  ++E + +     +     +KR  + +K+A + D  I      S  IT   S+   
Sbjct: 125 EVVLGVLEKQAQKINEDFFIYITQKRPFVHIKVAQTIDGKIATKTGSSKWITSQESRKYA 184

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H+LR Q+ A+LVG  T   D+P LT R     E  P+R++LD   K+ L+  I       
Sbjct: 185 HILRNQATAVLVGSNTAQLDNPSLTVRY-IQTERQPIRVLLDSKLKVPLNYNIYSKEAD- 242

Query: 244 PVIIVTENDDPVLALAF-RKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAV 298
            ++I ++  DP       ++ N+ +   D  +    +K +L IL    +  LLVEGG  V
Sbjct: 243 TIVITSKEADPYKKEILSKQSNVKLYTLDTYNGKFKIKDILEILYQNQIVHLLVEGGKEV 302

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLE 353
             SFI     D I L+ +  ++GE GI S    G  + N            FG D   E
Sbjct: 303 ITSFIKEDFWDKISLFTAPKIVGEDGISSFGSLGVNDINESIKLKVEDFKRFGDDFYFE 361


>gi|304413736|ref|ZP_07395180.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (N-terminal) and 5-amino-6-(5-phosphoribosylamino)
           uracil reductase (C-terminal) [Candidatus Regiella
           insecticola LSR1]
 gi|304283827|gb|EFL92221.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (N-terminal) and 5-amino-6-(5-phosphoribosylamino)
           uracil reductase (C-terminal) [Candidatus Regiella
           insecticola LSR1]
          Length = 381

 Score =  334 bits (858), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 121/378 (32%), Positives = 186/378 (49%), Gaps = 33/378 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL--EEAG 64
           D ++M+ AL  +      T+ NP+V C+IV++G ++G G     G PHAE+ AL   +A 
Sbjct: 9   DKKYMARALELALLGRFTTAPNPNVGCVIVREGKIVGEGYHVRAGEPHAEINALNKAKAK 68

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +EAR AT YVTLEPC H GR+PPC   +I  GI+RVVV + DP+ +VSGRG+  L Q GI
Sbjct: 69  DEARNATVYVTLEPCCHTGRTPPCTDALIAAGIKRVVVAMPDPNPQVSGRGIYQLQQAGI 128

Query: 125 IVDRM----MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           +VD +    ++++ +     +L R   +  ++ LK+A S D    MA   S  IT   ++
Sbjct: 129 VVDYIGSTTIKAKAEDINRGFLKRMRTRFPYLQLKMAASLDGRTAMASGESQWITSKEAR 188

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFK 229
             V   RAQSDAIL    T+LAD+P LT R   L               P RII+D   +
Sbjct: 189 QDVQNFRAQSDAILSTSATILADNPALTVRHGALATSVQKIYPKHGLRQPTRIIIDSCNR 248

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC------RDLKKLLTILV 283
           +    ++I       +  +T +            NI  ++          DL+  +  L 
Sbjct: 249 VMPCHRVITEPGACLLARMTAD------QQIWPDNIEQLFLPPSEEEKRIDLRLFMMELS 302

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFM 339
            R + S+ VE GA +A + +   +VD +ILY +  ++G+      +   +++     NF 
Sbjct: 303 RRQINSIWVEAGATLAGALLQIGVVDELILYLAPKLLGDNARGLCVLPGIDKLNQAHNFT 362

Query: 340 CVRRDYFGSDVCLEYIGK 357
                  GSD+ L     
Sbjct: 363 LQEVCQIGSDLRLRLTPN 380


>gi|152986432|ref|YP_001346431.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
           PA7]
 gi|150961590|gb|ABR83615.1| riboflavin biosynthesis protein RibD [Pseudomonas aeruginosa PA7]
          Length = 373

 Score =  334 bits (858), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 123/373 (32%), Positives = 183/373 (49%), Gaps = 22/373 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ D  +M+ AL  +R  +  T  NP V C++V+DG V+G G     G PHAEV AL +
Sbjct: 1   MNAADPLYMARALELARQGLYSTHPNPRVGCVLVRDGQVVGEGWHVRAGEPHAEVHALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE+ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q 
Sbjct: 61  AGEKARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E+E +     ++ R       + +K+A+S D    MA   S  ITG  +++
Sbjct: 121 GIAVHSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPAARS 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRA+S  +L G  T+LADD  L  R + L              P+R+++D   ++ 
Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLDAELTALAAARQPLRVLVDGRLRVP 240

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGV 287
           L+S   +     P ++ T          F+     ++         DL KLL  L  RG 
Sbjct: 241 LESAFYQ---AGPALVATCAAASARER-FQDAGHELLALPSAEGHVDLHKLLLELAARGA 296

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRD 344
             +LVE G  +A +F    LVD   L+ +   +G    P    PL               
Sbjct: 297 NEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAELEIDDIR 356

Query: 345 YFGSDVCLEYIGK 357
             G D  +    +
Sbjct: 357 AVGDDWLVTARPR 369


>gi|316984420|gb|EFV63393.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
           H44/76]
 gi|325200879|gb|ADY96334.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
           H44/76]
          Length = 361

 Score =  334 bits (858), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 124/359 (34%), Positives = 183/359 (50%), Gaps = 13/359 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
            M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +AGE A+G
Sbjct: 1   MMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQAGEMAQG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           ATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   GI  +  
Sbjct: 61  ATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAGIKTECG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  V +LRA
Sbjct: 121 LLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVLRA 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           +S A+L GIGTVLAD+P L  R        P RI+LD   +L  +S ++ T   +P  I 
Sbjct: 181 ESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPNSHLV-TDGQSPTYIA 238

Query: 249 TENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           T   +      +R+     I           DL  L+ +L   G   ++VE G+ +  +F
Sbjct: 239 TLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 298

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVCLEYIGK 357
           +   L D I+LYRS  ++G G     L E          +  V  +  G ++   +   
Sbjct: 299 LAENLADEIVLYRSPKILGSGKDLFSLLENRAALSAPPLWTPVSSEILGHNIKTVFRKN 357


>gi|257462874|ref|ZP_05627280.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium
           sp. D12]
 gi|317060498|ref|ZP_07924983.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium sp. D12]
 gi|313686174|gb|EFS23009.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium sp. D12]
          Length = 359

 Score =  334 bits (858), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 107/358 (29%), Positives = 185/358 (51%), Gaps = 11/358 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M  AL+ ++   G  + NP V  ++VK+G +IG+G     G PHAEV AL+EAG EA
Sbjct: 4   QEYMHFALKLAKKGEGKVNPNPLVGAVVVKNGNIIGQGYHHQYGGPHAEVYALQEAGTEA 63

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           + AT YVTLEPCSHYG++PPCA+ II+ GI+R ++ ++DP+  V+G+G+  + + GI + 
Sbjct: 64  KDATIYVTLEPCSHYGKTPPCAKKIIDSGIKRCIIAMEDPNPLVAGKGIAMMKEAGIQVE 123

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             + E+E ++    +L     K   + LK  ++ D  +      S  IT   ++ +V  L
Sbjct: 124 VGLCETEARVLNRVFLKYISTKTPFLFLKCGITLDGKLATRSFQSKWITNETARERVQYL 183

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R +   I+VGI TV+ D+P L  R+       P RII+DP+ ++ L SK++       +I
Sbjct: 184 RNKYMGIMVGIHTVIEDNPSLDARIE--NGRDPYRIIVDPYLEIPLSSKLLHKKDKKVII 241

Query: 247 IVT-ENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           I +    +        K  +  I+   R      +L  +   GV S+L+EGG  +  +  
Sbjct: 242 ITSLSEKETDKRKELEKLELRFIFLKERIFSFSNMLEEIGKLGVDSVLLEGGGQLISAAF 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPL-----EEGYLEKNFMCVRRDYFGSDVCLEYIG 356
              ++D   ++ +  ++G+    S +     E      +   V+   +G++  +E+  
Sbjct: 302 QENVIDGGEIFIAPKILGDEKAVSFISGFCKESMEEAISLPNVKVHQYGNNCSMEFYR 359


>gi|270308361|ref|YP_003330419.1| riboflavin biosynthesis protein,
           5-amino-6-(5-phosphoribosylamino)uracil reductase,
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Dehalococcoides sp. VS]
 gi|270154253|gb|ACZ62091.1| riboflavin biosynthesis protein,
           5-amino-6-(5-phosphoribosylamino)uracil reductase,
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Dehalococcoides sp. VS]
          Length = 365

 Score =  334 bits (858), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 125/358 (34%), Positives = 180/358 (50%), Gaps = 15/358 (4%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           ++MS AL  ++  +G  S NPSV  +IVK+G V+G+G T   G  HAE+ AL++A E+A+
Sbjct: 2   KYMSQALSLAKLAIGQVSPNPSVGAVIVKNGEVVGQGFTQPPGGDHAEIVALKQAAEKAK 61

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127
           GA  YVTLEPC H GR+PPC   IIE GI+ V +   D +  VSG+G + L   GI V  
Sbjct: 62  GAALYVTLEPCCHQGRTPPCTGSIIESGIKEVYIATLDDNPLVSGKGKKELENAGIKVHL 121

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            MME E +    AY          +T K A+S D   G     S  I+   S++  H +R
Sbjct: 122 GMMEREARQMNEAYFKHITTGMPFVTAKYAMSLDGKTGTRTGDSKWISNEESRHFAHYIR 181

Query: 188 AQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
             SD I+ G+ T+L DDP LT R+N    G     P R+I+D + +  L S +       
Sbjct: 182 HISDVIMAGLNTILKDDPHLTARVNCGRGGTSHSQPTRVIIDDNGRAPLSSNVFHVPGN- 240

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVA 299
            ++ V +        A+ +    ++         DLK LL  L   GVTS+LVEGG  V 
Sbjct: 241 TIVAVAKGLTLEEKQAYDEVGAKVVELPDERGLVDLKALLRYLGQNGVTSVLVEGGGIVL 300

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCL 352
            S  + +LVD ++++ + I+IG      P+     E          +    FG DV +
Sbjct: 301 GSLFDLKLVDKVLVFVAPIIIGGKDAKIPVAGLGAELITDSAKLRDITTTAFGQDVLI 358


>gi|261856455|ref|YP_003263738.1| riboflavin biosynthesis protein RibD [Halothiobacillus neapolitanus
           c2]
 gi|261836924|gb|ACX96691.1| riboflavin biosynthesis protein RibD [Halothiobacillus neapolitanus
           c2]
          Length = 386

 Score =  334 bits (858), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 187/370 (50%), Gaps = 18/370 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D R+M  AL  +   +  T  NP V C+IV  G V+GRG  A  G PHAEV AL+E
Sbjct: 10  FSPDDTRWMREALALAERGLTTTQPNPRVGCVIVNAGEVVGRGFHALAGGPHAEVFALQE 69

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+GATAYVTLEPC+H GR+P CA  + + G+RRVV  + DPD RV+G G   L   
Sbjct: 70  AGERAKGATAYVTLEPCAHVGRTPACAPQLADAGVRRVVTAMTDPDPRVAGEGHAILRTA 129

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +   ++E+E +     +L+R    R  +T+KIA S D    +A   S  ITG  +++
Sbjct: 130 GVQVESGLLEAEARWLNRGFLSRIERGRPWVTVKIAQSLDGRTALANGESRWITGEAARH 189

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN------GLQEHSPMRIILDPHFKLSLDSK 235
            V  LRA+  A+L G+ TVL DD  L  RL+            P+R++LD   +L   + 
Sbjct: 190 DVQFLRARHAAVLTGVDTVLTDDARLNVRLSPEALAIDGAVRQPLRVVLDSGLRLPPFAP 249

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLL 291
           I         I   + D  +       + + ++         DL  +L  L  +G++ +L
Sbjct: 250 IFDVQGEVR-IYTRDVDAGIHHDGLTARGVQLVAAPQAEFGLDLGFILRDLALQGISEVL 308

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP-----SPLEEGYLEKNFMCVRRDYF 346
           VE G  +A +F++   VD +I+Y++ +++G    P     SP+        +        
Sbjct: 309 VESGPKLAGAFVDQGWVDELIIYQAPVLLGHKAQPCLDLASPI-RLDDAPRWQIRDTTPV 367

Query: 347 GSDVCLEYIG 356
           G D+ +  + 
Sbjct: 368 GQDIRITLVP 377


>gi|83941150|ref|ZP_00953612.1| riboflavin biosynthesis protein RibD [Sulfitobacter sp. EE-36]
 gi|83846970|gb|EAP84845.1| riboflavin biosynthesis protein RibD [Sulfitobacter sp. EE-36]
          Length = 367

 Score =  334 bits (858), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 131/364 (35%), Positives = 189/364 (51%), Gaps = 11/364 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           S DARFM+ AL   R   G    NP+V C+IV+ G ++GRG T  GG PHAE QAL +AG
Sbjct: 2   SDDARFMALALSLGRRGQGAVWPNPAVGCVIVQQGRIVGRGWTQPGGRPHAEPQALRQAG 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
             A+GAT YVTLEPC+H G++PPCA  ++     RVV+   D D RVSG+G+  L   GI
Sbjct: 62  PAAQGATVYVTLEPCAHTGKTPPCADALVAAKPARVVIACTDSDTRVSGKGIAILRAAGI 121

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
           IVD  ++E E +     +  R  E R  +TLK+A S D  I  A   S  IT   ++  V
Sbjct: 122 IVDVGVLEDEARADHLGFFLRVDEGRPMVTLKLASSFDGRIATASGESQWITAPPARRVV 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H +R++ DA++VG GT   DDP LT R  G     P RI++     + L+  + +TA   
Sbjct: 182 HAMRSRHDAVMVGGGTARQDDPSLTVRDLGTT-RQPTRIVVSNGLDIPLNGTLARTANDI 240

Query: 244 PVIIVTENDDP-VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298
           P+I+      P  L   +      +I C  +    D   +L  L   G+T +  EGG  +
Sbjct: 241 PLILCHGPKAPAELIGTWESLGATLISCAPKMGQIDADDMLQQLGRHGLTRIFCEGGGGL 300

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCVRRDYFGSDVCLEY 354
           A + +   LVD ++ + + + +G  G+P  +PL+   L +   F        G D+   +
Sbjct: 301 AATLLKENLVDQLVGFTAGLALGADGLPAIAPLQLPRLAQAPRFTLTETSRIGPDLLHIW 360

Query: 355 IGKN 358
              N
Sbjct: 361 HRSN 364


>gi|33240788|ref|NP_875730.1| pyrimidine reductase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238317|gb|AAQ00383.1| Pyrimidine reductase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 367

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 115/358 (32%), Positives = 180/358 (50%), Gaps = 10/358 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEE 66
             +M  A+  +    G TS NP V  +I+ +   ++G G     G PHAE+ A+E+AG  
Sbjct: 11  EPWMFRAINLASLAEGQTSPNPLVGAVILDEKNRLVGEGFHLRSGEPHAEIGAIEQAGSL 70

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+G T  V LEPC H G++PPC   I+  GI+RVVV + DPD RVSG+G+ +L + GI +
Sbjct: 71  AKGGTLLVNLEPCCHRGKTPPCTDAILRSGIKRVVVAIQDPDQRVSGKGIAFLKESGIEV 130

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++E E      A++ R    R   TLK A+S D  IG++   S  I+G  S+ +VH 
Sbjct: 131 VTGILEKEAAFLNRAFIFRNRTGRPWGTLKWAMSFDGRIGLSNGKSKWISGEKSRKRVHS 190

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRA++DA++VG GTV +D+P LT R  G+ +  P+R++      L  ++++  T  LA  
Sbjct: 191 LRAKNDAVIVGGGTVRSDNPLLTTR--GIADIEPLRVVCSSTLDLPKEAQLWNTE-LAKT 247

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           +I    +     L         +  +     K++  L  RG   +L E G+++A   I  
Sbjct: 248 LIFYGPESDARCLENLPSGPERLCLEENTPIKVMEALAQRGCNQVLWECGSSLATKAIQQ 307

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGKN 358
             V  + L+ S  ++G     +PL +              V  +  G D  L  +  N
Sbjct: 308 NCVQELSLFLSPKLLGGVSAMTPLADFGFSSMEQVFKLKEVSSNKSGEDFVLNMLFDN 365


>gi|330976721|gb|EGH76762.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 378

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 129/364 (35%), Positives = 186/364 (51%), Gaps = 20/364 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            ++ D  +M+ AL  +R  +  T  NP V C+IV++G ++G G  A  G PHAEV AL +
Sbjct: 5   QAALDVHYMARALEMARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQ 64

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH GR+PPCA  +IE G+ RVV  + DP+  VSGRGL  L   
Sbjct: 65  AGELARGATAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNA 124

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++ESE +     +L R      ++ +K+A+S D    MA   S  ITG  +++
Sbjct: 125 GIGVQCGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARS 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRAQS  +L G  TVLAD   LT R + L             +P+R+++D   ++ 
Sbjct: 185 AVQRLRAQSSVVLSGADTVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLRVP 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVT 288
           LD+   +       ++VT            + +  +   D     DL++L+  L  RGV 
Sbjct: 245 LDAPFFQAGSA---LVVTCAAASARGRYQEEGHEMLALADSAGHVDLRRLMGELAARGVN 301

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345
            +LVE G  +A +F    LVD   L+ +   +G    P    PL +         V    
Sbjct: 302 EVLVEAGPRLAGAFARLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIVEMRA 361

Query: 346 FGSD 349
            G+D
Sbjct: 362 VGND 365


>gi|317122797|ref|YP_004102800.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Thermaerobacter marianensis DSM 12885]
 gi|315592777|gb|ADU52073.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Thermaerobacter marianensis DSM 12885]
          Length = 427

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 139/357 (38%), Positives = 186/357 (52%), Gaps = 15/357 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  ALR +    G T  NP V  +IV+DG V+G G     G PHAE++AL  AGE 
Sbjct: 35  DRAFMRRALRLASRARGRTHPNPMVGAVIVRDGEVVGEGFHRRAGEPHAEIEALRMAGER 94

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGAT YVTLEPC HYGR+PPC   II  G+RRVVV + DPD RV+GRG+  L+  GI V
Sbjct: 95  ARGATLYVTLEPCCHYGRTPPCTGAIISAGLRRVVVAMVDPDPRVAGRGIAALAAAGIEV 154

Query: 127 DRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +E E       AY+  +   R  +T K A++ D  I  A   S  +TG  ++   H 
Sbjct: 155 AVGLEEEAARRLNEAYIVHRRLGRPMVTAKYAMTLDGRIATARGDSRWVTGIRARRWAHR 214

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP- 244
           LR + DAILVG+GTVLADDP LT RL       P+RI+LD H +    +++++ A  +P 
Sbjct: 215 LRDRVDAILVGVGTVLADDPLLTVRL-HPGGRDPLRIVLDSHARTPPTARVVQVARQSPA 273

Query: 245 --VIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAA 297
              + VT            +    ++           L  LL +L   GV  LLVEGGA+
Sbjct: 274 PTWVAVTPGAPAARVRGLEEAGARVVTLPAGPDGRVSLPHLLRLLAAEGVVHLLVEGGAS 333

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSD 349
           V  +F  +RLVD ++   +  + G    P P+    +E+         V     GSD
Sbjct: 334 VHGAFFGARLVDRVVALVAPKLAGGAEAPGPIAGPGVERMADAPVLRRVFARRLGSD 390


>gi|195952880|ref|YP_002121170.1| riboflavin biosynthesis protein RibD [Hydrogenobaculum sp. Y04AAS1]
 gi|195932492|gb|ACG57192.1| riboflavin biosynthesis protein RibD [Hydrogenobaculum sp. Y04AAS1]
          Length = 357

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 110/322 (34%), Positives = 173/322 (53%), Gaps = 2/322 (0%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + D  +M  AL  +  + G T  NP+V  LIVKD  ++  G     G  HAE+ AL+ 
Sbjct: 1   MINKDKYYMKLALEEAYKYKGQTHPNPAVGVLIVKDDKILSIGAHKKAGTDHAEIVALKN 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A E+ +GAT YVTLEPCS +G++PPC   II  GI++VV+   DP+ +VSG+G++WL   
Sbjct: 61  AQEDVKGATMYVTLEPCSFHGKTPPCCPAIISSGIKKVVIGSVDPNPKVSGKGIEWLKSA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   +++ E       +     +KR  ITLK A+S D  +      S  I+   ++ 
Sbjct: 121 GIEVEVGVLKEECDKLNEDFFVYITQKRPFITLKCAMSLDGKLAKENKDSKWISSEKARK 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
             H+ R  S AILVGI T+L D+P+LT RL G  E+ P  +++DP+  +  D+ I K   
Sbjct: 181 ISHIYRKYSSAILVGINTILKDNPKLTVRLEG-NEYQPYSVVIDPNLDIPYDANIFKKGY 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
              +IIV+   D       +   + ++  +  D+K +L  L    +  + VEGGA     
Sbjct: 240 ENIIIIVSTKTDDKKKEYLKSLGVRLLELESFDIKSILKALYEIDIMHIFVEGGAYTISR 299

Query: 302 FINSRLVDSIILYRSQIVIGEG 323
           F+   + D ++++R    IG+G
Sbjct: 300 FLEENMWDKMLIFRGYKFIGKG 321


>gi|269798015|ref|YP_003311915.1| riboflavin biosynthesis protein RibD [Veillonella parvula DSM 2008]
 gi|269094644|gb|ACZ24635.1| riboflavin biosynthesis protein RibD [Veillonella parvula DSM 2008]
          Length = 404

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 122/391 (31%), Positives = 181/391 (46%), Gaps = 39/391 (9%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M  A+  ++   G TS NP V  ++VKD  +IG G     G  HAEV AL +AG+
Sbjct: 3   DDVVYMKRAIELAKLATGHTSPNPLVGAVVVKDNTIIGEGYHHKAGTAHAEVHALNQAGD 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            A+GAT YVTLEPCSHYG++PPCA  IIE GI +V+V   DP+  VSG+G++ L + GI 
Sbjct: 63  NAKGATLYVTLEPCSHYGKTPPCALRIIEAGIAKVIVGSTDPNPLVSGKGMELLREAGIE 122

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V  +   E       + T     +  +T+K A+S D  I  +   S  IT   S+   H
Sbjct: 123 VVCPVCSDECAELNEHFFTYIQTGKPFVTIKSAMSLDGKIATSTGQSQWITNESSRRDGH 182

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------------HSPMRIILDPHF 228
           +LRA  DA+LVGIGT+LAD+P+L CRL   +                 H P  IILD   
Sbjct: 183 VLRATHDAMLVGIGTILADNPQLNCRLTDSELSDALLDKSILDEPITIHQPDVIILDSLG 242

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---------------- 272
           +    S++         I+V++        A       +   +                 
Sbjct: 243 RTPTTSQVFDVENRKVHILVSKGCPKERIQALENVGTIVTVVESISTRKSKSTDVVIDIK 302

Query: 273 -RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
              +  +LT L   G TS+LVEGG+A+  SF+ +   D ++ Y    +IG       +  
Sbjct: 303 KLSIDDILTKLGELGYTSILVEGGSAIISSFVETMNFDKVVTYIGNTIIGGNDATPAVGG 362

Query: 332 GYLE-----KNFMCVRRDYFGSDVCLEYIGK 357
              E           +     +++ +E   +
Sbjct: 363 RGFESLEASPQLTFTKTKVLDNNIRIEAYRQ 393


>gi|91784896|ref|YP_560102.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Burkholderia xenovorans LB400]
 gi|91688850|gb|ABE32050.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Burkholderia xenovorans LB400]
          Length = 389

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 122/367 (33%), Positives = 183/367 (49%), Gaps = 23/367 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +R  +  T  NP V C++VK+G VIG G T   G  HAE++AL++
Sbjct: 2   FSQTDFVHMERALALARRGMYTTDPNPRVGCVLVKNGAVIGEGFTQPAGQDHAEIRALKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + RGATAYVTLEPCSH+GR+PPC   +IE  +  VV  ++DP+  VSGRGL  L
Sbjct: 62  ARSRGHDLRGATAYVTLEPCSHFGRTPPCVNALIEAQVALVVAAMEDPNPLVSGRGLAIL 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++ +E       +++R    R  + +K+A S D   G+    S  ITG  
Sbjct: 122 RDAGIEVRCGLLANEAHELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGVSQWITGEA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H  RA++ AIL GIGTV  DDP +T R        P R+++D    +  +++I+ 
Sbjct: 182 ARADGHAWRARASAILTGIGTVREDDPRMTVRAVD-TPRQPQRVLIDSQLDVPPEAQIL- 239

Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291
               AP +I   N D      A A R +   I+         DL  +L +L  R V  L 
Sbjct: 240 --AGAPTLIFCGNLDQRHTDRANALRDRGAEIVQLANPAGKVDLPAVLKVLGERNVNELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP------LEEGYLEKNFMCVRRDY 345
           VE G  +  S +    VD +++Y +  ++G   +           +  ++ +F  V  D 
Sbjct: 298 VEAGYKLNGSLLREGCVDELLVYLAPSLLGMDSMSMFSLTTPETLDDRVKLHFHAV--DR 355

Query: 346 FGSDVCL 352
            G D+ +
Sbjct: 356 IGDDLRI 362


>gi|313675594|ref|YP_004053590.1| riboflavin biosynthesis protein ribd [Marivirga tractuosa DSM 4126]
 gi|312942292|gb|ADR21482.1| riboflavin biosynthesis protein RibD [Marivirga tractuosa DSM 4126]
          Length = 359

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 118/357 (33%), Positives = 179/357 (50%), Gaps = 15/357 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S  D  FM  AL+ + +     S NP V C+IV DG VIG G     G PHAEV A+  
Sbjct: 10  MSKQDELFMQRALQLAGYGKATASPNPMVGCVIVLDGKVIGEGWHKKAGEPHAEVMAIRS 69

Query: 63  A--GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
               E  + +TAYVTLEPC+HYG++PPCA+ ++E  +++VV+   DP+  V+G+G+Q L 
Sbjct: 70  VENPELLKSSTAYVTLEPCAHYGKTPPCAELLVEKQLKKVVIGAVDPNPLVAGKGIQILK 129

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI +   ++E E      A+ T   +KR +I LK A + D  I      S  I+  +S
Sbjct: 130 KAGIEVESAVLEQECLEVNKAFFTYMQKKRPYIILKWAQTSDGFIARENFDSKWISNPLS 189

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  VH  R ++DAIL+G  T   DDP+LT R       +P+R+++D    L  D KI   
Sbjct: 190 RQIVHKWRTETDAILIGKNTAKYDDPQLTAR--DWSGKNPIRLVIDHDLTLGNDLKIFDG 247

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTSLLVEGGAAV 298
                 I     D  +      +K I  I     D L+ +L  L    + S+L+EGGA  
Sbjct: 248 EQ--KTIFFHSQDQKI-----ERKGIAAIKLSKEDFLRDMLNYLHQEKIQSVLIEGGAQT 300

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
             SFI++ L D   ++ + +   +G   + L+   L        ++   +DV   Y 
Sbjct: 301 VQSFIDAGLWDEARIFTASVSFEKGIKAAELKSHQLVSQENIQDKNQ--TDVLTTYR 355


>gi|42520555|ref|NP_966470.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410294|gb|AAS14404.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 360

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 128/354 (36%), Positives = 185/354 (52%), Gaps = 6/354 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FMS ALR +  ++G  + NP+V C+IVKDG ++  G T  GG PHAEV AL+ A + 
Sbjct: 3   DDHFMSIALRLAEKNLGNVAPNPAVGCIIVKDGTIVSEGYTGIGGRPHAEVVALQNAKDS 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GAT Y+TLEPC H+G + PC   II+  I+RVV+   DPD RVSGRG++ L + GI +
Sbjct: 63  THGATIYITLEPCCHHGVTGPCTAKIIKASIKRVVIATIDPDSRVSGRGMKALKEAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M+ E K     + T +   R  I  K+A + D  I      S  IT   ++N VH 
Sbjct: 123 EQGIMQKEAKELNVGFFTTKELHRPFIACKVATTLDGKIATFTGDSKWITSENTRNWVHE 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR + DAI++G  T++ DDP LTCRL GL   SP+R+I+D   +L  +  I KTA     
Sbjct: 183 LRTKYDAIMIGSNTLINDDPLLTCRLPGLGSRSPIRLIIDSQGRLKEEHNIAKTADKVIT 242

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKL-LTILVGRGVTSLLVEGGAAVAHSFIN 304
            ++T  +            +N        LK + L ++   G+T LLVEGG  +    + 
Sbjct: 243 WVITNKEVEKKIKNINYLVVNSSNAGKVCLKDMALKLVSEIGITRLLVEGGGVLITELLK 302

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEY 354
             L+D +I+ RS  ++G    P   + G    N    F   +   F  D+   +
Sbjct: 303 CNLIDRLIICRSGKILGNDATPFVGDLGIQFINNCYQFKKTKIIEFSEDIVEVW 356


>gi|238026457|ref|YP_002910688.1| Pyrimidine reductase, riboflavin biosynthesis [Burkholderia glumae
           BGR1]
 gi|237875651|gb|ACR27984.1| Pyrimidine reductase, riboflavin biosynthesis [Burkholderia glumae
           BGR1]
          Length = 372

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 125/365 (34%), Positives = 180/365 (49%), Gaps = 19/365 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  S   +  T+ NP V C+IVKDG+VIG G T   G  HAEVQA+++
Sbjct: 2   FSDTDFAHMQRALDLSSRGMYTTTPNPRVGCVIVKDGVVIGEGYTQPAGQDHAEVQAMKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + RGAT YVTLEPCSH+GR+PPCAQ +I+  + RV+  ++DP+  VSGRGL  L
Sbjct: 62  ARSRGHDLRGATVYVTLEPCSHFGRTPPCAQGLIDARVARVIAAMEDPNPAVSGRGLAML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++  E       +++R    R  + +KIA S D    +    S  ITG  
Sbjct: 122 RDAGIEVRCGLLAQEAHEMNIGFVSRMTRGRPWLRMKIAASLDGRTALPTGESQWITGEA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H  RA++ AIL GIGTVL DDP LT R        P+R+++D    L LD+K++ 
Sbjct: 182 ARRDGHAWRARACAILTGIGTVLEDDPRLTVRDID-TPRQPLRVLVDSRLDLPLDAKLL- 239

Query: 239 TALLAPVIIVTENDD---PVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291
               AP+++     D      A A R +   +I         DL  +L  L   G+  L 
Sbjct: 240 --AGAPILVFCGRLDAASEARAAALRDRGAEVIPLADANGKVDLPAMLAALGRHGINELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFG 347
           VE G  +  S +    VD +++Y +  ++G         +                D  G
Sbjct: 298 VEAGHKLNGSLLREGCVDELLVYLAPTLLGPEAAGMFNIATPPTLAQRTVLQYHSIDRIG 357

Query: 348 SDVCL 352
            D+ +
Sbjct: 358 DDLRV 362


>gi|27363797|ref|NP_759325.1| riboflavin biosynthesis protein RibD [Vibrio vulnificus CMCP6]
 gi|27359914|gb|AAO08852.1| riboflavin biosynthesis protein RibD [Vibrio vulnificus CMCP6]
          Length = 368

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 116/367 (31%), Positives = 184/367 (50%), Gaps = 28/367 (7%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            ++ D + M  A+  ++  +  T+ NP+V C++++DG ++G G     G PHAEV A+  
Sbjct: 4   FTAIDRQMMLRAIALAKRGLYTTAPNPNVGCVLLRDGEIVGEGFHFRAGEPHAEVHAMRM 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG++A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RVV  ++DP+ +V+GRG   L + 
Sbjct: 64  AGDKAKGATAYVTLEPCSHYGRTPPCAEGLIKAGVSRVVCAMEDPNPQVAGRGFAMLREA 123

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++++E +    A++ R       + LK+A S D    +A   S  IT   ++ 
Sbjct: 124 GIEVSVGLLQAEAEALNPAFIKRMKMGMPFVQLKMAASLDGQTALANGKSQWITSPQARR 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V   RAQS AIL    TVLAD+  L  R + L               P R++LD   +L
Sbjct: 184 DVQRFRAQSGAILSTSKTVLADNASLNVRWSELPSSVQRALPQEQLRQPTRVVLDRQAEL 243

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG-VTS 289
           S + K+ +T     +I+  + D P            +      DL +L   L     +  
Sbjct: 244 SPELKLYQTEGE-RLIVGPKGDLPA----------PLDEHGQIDLPQLFAQLSQTQLINH 292

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDY 345
           L VE GA +A   I  +LVD +I+Y +  ++G  G        L+      +        
Sbjct: 293 LWVEAGATLAAGLIKHQLVDELIVYLAPKLMGSDGRGLMGALGLQAMSQVIDLDIKDVRM 352

Query: 346 FGSDVCL 352
            G D+ +
Sbjct: 353 VGPDIRI 359


>gi|319942892|ref|ZP_08017175.1| riboflavin biosynthesis protein RibD [Lautropia mirabilis ATCC
           51599]
 gi|319743434|gb|EFV95838.1| riboflavin biosynthesis protein RibD [Lautropia mirabilis ATCC
           51599]
          Length = 385

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 119/366 (32%), Positives = 180/366 (49%), Gaps = 19/366 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           +  D R M  A+  +   V  T  NP V C+IV+DG V+G G     G PHAEV AL++A
Sbjct: 3   TEDDRRAMQRAIDLAWQGVNTTMPNPRVGCVIVRDGEVVGEGWHRRAGEPHAEVLALQQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYVTLEPCSH+GR+ PCA  ++E G+ RVV  ++DP+  V+G+GL  L   G
Sbjct: 63  GERARGATAYVTLEPCSHHGRTGPCADRLVEAGVARVVAAMEDPNPLVNGQGLGRLRAAG 122

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +   ++E E +     +++R    R  + LK A S D  I +    S  ITG  ++  
Sbjct: 123 IDVRCGLLEEEARALNEGFISRMQRGRPWVRLKAATSLDGFIALPDGESQWITGEAARTD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H  RA++ AIL G GTV AD+P LT R +   E  P+R+++D   ++S  + I      
Sbjct: 183 GHAWRARASAILTGSGTVQADNPALTVR-HVATERQPVRVLVDARLQVSEHAAIF---GP 238

Query: 243 APVIIVTE----NDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVE 293
               +         D         + + ++Y         DL  L+  +   G   + VE
Sbjct: 239 GETWVAHAMPPDWPDDGHRQRLLDRGVRLLYLPAADGRHVDLPALMRAMGEAGFNEVHVE 298

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSD 349
            GA +  + I +  VD ++LY +  ++G+ G+P+     +                 G D
Sbjct: 299 AGAGLNAALIQAGCVDELLLYVAPALLGQ-GLPAFALPAVPGLDDRIRLAWREATPVGDD 357

Query: 350 VCLEYI 355
           + L   
Sbjct: 358 LRLRLR 363


>gi|56475984|ref|YP_157573.1| riboflavin biosynthesis bifunctional RIBD:
           diaminohydroxyphosphoribosylaminopyrimid ine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           oxidoreductase protein [Aromatoleum aromaticum EbN1]
 gi|56312027|emb|CAI06672.1| riboflavin biosynthesis bifunctional RIBD:
           diaminohydroxyphosphoribosylaminopyrimid ine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           oxidoreductase protein [Aromatoleum aromaticum EbN1]
          Length = 366

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 111/361 (30%), Positives = 180/361 (49%), Gaps = 13/361 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S  D   M+ AL+ +   +  T+ NP V C+++K+G ++G G     G PHAEV AL
Sbjct: 1   MTYSEADHVAMARALQLAERGLETTTPNPRVGCVLMKEGSIVGEGWHRRAGEPHAEVIAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AG+ ARGATAYVTLEPC+H+GR+PPCA  +I  G+ RVV  ++DP+  V+G G+  L 
Sbjct: 61  RAAGDTARGATAYVTLEPCTHHGRTPPCADALIAAGVTRVVAAMEDPNPLVAGTGVGRLR 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             G+ +   ++ S+       +++R    R  + LK A + D    +    S  IT   +
Sbjct: 121 AAGLAVTTGLLASDAHELNIGFVSRMTRGRPWVRLKTASTLDGKTALNNGVSQWITADAA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H  RA++ A+L GIGTV  DDP+LT R     E  P+R+++D    + L +K+++ 
Sbjct: 181 RRDGHRWRARACAVLTGIGTVREDDPQLTVRAVPC-ERQPLRVLVDARLDIPLSAKLLQG 239

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGG 295
                 +I T  +D   + A       ++         DL  L+  L  RG+  + VE G
Sbjct: 240 GG---CLIATAIEDCEKSAALAALGAEVVVLPNGRGKVDLPSLMRELGDRGINEVHVEAG 296

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVC 351
             +  S +    VD ++LY + +++G+          L +             + G D+ 
Sbjct: 297 LKLNGSLLRENCVDELLLYVAPMLVGDAAQGLFNLPELVQLDRAIRLQWRDVRFIGGDLR 356

Query: 352 L 352
           +
Sbjct: 357 V 357


>gi|307730708|ref|YP_003907932.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1003]
 gi|307585243|gb|ADN58641.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1003]
          Length = 384

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 126/367 (34%), Positives = 187/367 (50%), Gaps = 23/367 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +R  +  T  NP V C+IV++G VIG G T   G  HAE++A+++
Sbjct: 2   FSQTDFVHMERALALARRGMYTTDPNPRVGCVIVQNGEVIGEGFTQPAGQDHAEIRAMKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + RGATAYVTLEPCSH+GR+PPCA  +IE  + RVV  ++DP+ +VSGRGL  L
Sbjct: 62  ARSRGHDLRGATAYVTLEPCSHFGRTPPCASALIEAQVGRVVAAMEDPNPQVSGRGLAML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++ +E       +++R    R  + +K+A S D   G+    S  ITG  
Sbjct: 122 RDAGIEVRCGLLANEAHELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGVSQWITGEA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H  RA++ AIL GIGTV  DDP +T R        P R+++D   ++   ++I+ 
Sbjct: 182 ARADGHAWRARASAILTGIGTVREDDPRMTVRAVE-TPRQPQRVLIDSQLEVPPQAQIL- 239

Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291
               AP +I   N D      A A R +   I+         DL  +L  L  R V  L 
Sbjct: 240 --AGAPTLIFCGNLDERHRERAQALRDRGAEIVEMANGAGKVDLPGMLKALGERQVNELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-----GIPSP-LEEGYLEKNFMCVRRDY 345
           VE G  +  S +    VD +++Y +  ++G        + +P   EG ++  F  V R  
Sbjct: 298 VEAGYKLNGSLLREGCVDELLVYLAPSLLGIDSMSMFNLSAPETLEGRVKLAFHNVER-- 355

Query: 346 FGSDVCL 352
            G D+ +
Sbjct: 356 IGDDLRI 362


>gi|319784162|ref|YP_004143638.1| riboflavin biosynthesis protein RibD [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170050|gb|ADV13588.1| riboflavin biosynthesis protein RibD [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 371

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 163/365 (44%), Positives = 226/365 (61%), Gaps = 10/365 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQ 58
            ++ D RFM+AALR SR + G T+TNPSV  LIV+D     +++G GVTA GG PHAE +
Sbjct: 6   QAALDRRFMAAALRLSRKNAGRTATNPSVGTLIVRDDGNGPMIVGTGVTAVGGRPHAETE 65

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           AL EAG+ ARGATAYVTLEPC+H+GR+PPCA  ++  G+ RVV    DPD RVSG+G   
Sbjct: 66  ALAEAGDLARGATAYVTLEPCAHHGRTPPCANALVNAGVARVVGAASDPDSRVSGKGYAI 125

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L   G+ +V++++ +E    +  YL R + KR  + LK+A+S D  IG  G G V ITG 
Sbjct: 126 LRAAGVEVVEKVLAAEAAEQMAGYLIRSLRKRPEVILKLALSSDGKIGREGDGQVSITGD 185

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
           I++ +V+L+RA++DAILVGIGT L DDP LT RL GL+  SP RI+LD   +L   SK++
Sbjct: 186 IARREVYLMRAEADAILVGIGTALEDDPALTVRLPGLENRSPARIVLDRQIRLPEASKLV 245

Query: 238 KTALLAPVIIVTE-NDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLV 292
                 P+ I      DP+   A  +  +  I  +  +    L +LL  L   G+ S+LV
Sbjct: 246 SGVDRVPLYIAACLEADPLRRAALERAGVRFIGTETHEGGVALPELLEDLAALGMASVLV 305

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           EGGA VA +F+   LVD I+L++    IG+ GI SP++  ++   F  +R   FG D   
Sbjct: 306 EGGARVASAFLADGLVDRIVLFQGPDAIGDDGIASPVDADHIPAGFRKLRDMRFGEDSYA 365

Query: 353 EYIGK 357
           E+I  
Sbjct: 366 EWIRD 370


>gi|300113757|ref|YP_003760332.1| riboflavin biosynthesis protein RibD [Nitrosococcus watsonii C-113]
 gi|299539694|gb|ADJ28011.1| riboflavin biosynthesis protein RibD [Nitrosococcus watsonii C-113]
          Length = 371

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 113/331 (34%), Positives = 180/331 (54%), Gaps = 14/331 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ ++  +  T  NP V C++V+ G ++G G     G  HAE+ AL +AG  
Sbjct: 3   DRAYMVRALKLAQRGLFTTDPNPRVGCVLVRGGEIVGEGWHQQAGDSHAEINALRQAGIR 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+G+T YVTLEPC H GR+PPC + +IE G+ RVV  + DP  +V+ +GL  L + G+ +
Sbjct: 63  AQGSTCYVTLEPCCHRGRTPPCTEALIEAGVARVVAAMGDPHPKVASQGLAQLREAGLQV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +++ E +     ++ R V+ R  +  K+A+S D    +A   S  IT   ++  V  
Sbjct: 123 EHGLLQEEAEALNVGFVQRLVQGRPWVRCKLAMSLDGATALASGESRWITASPARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-------HSPMRIILDPHFKLSLDSKIIK 238
            RA+S AIL GIGTVL DDP L  R   L +         P+R+ILD    +S+ ++++ 
Sbjct: 183 WRARSSAILTGIGTVLEDDPSLNVRYEELGDEAPLGFNRQPLRVILDRQLAISVQARLL- 241

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEG 294
            +L  PV+IV  +     A + R + + +I         DL  L+  L  R +  L VE 
Sbjct: 242 -SLPGPVMIVCADAASSKAESLRCRGVEVISLPVTPQGLDLMALMAALAAREINELHVEC 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           GA +A S + + L+D ++LY +  ++GE  +
Sbjct: 301 GARLAGSLLQAGLMDELVLYIAPKLMGEAAL 331


>gi|163747444|ref|ZP_02154796.1| riboflavin biosynthesis protein ribD [Oceanibulbus indolifex
           HEL-45]
 gi|161379297|gb|EDQ03714.1| riboflavin biosynthesis protein ribD [Oceanibulbus indolifex
           HEL-45]
          Length = 370

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 136/361 (37%), Positives = 189/361 (52%), Gaps = 11/361 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DARFM+ AL   R   G    NP+V C+IV+   +IGRG T  GG PHAE QAL +AGE 
Sbjct: 8   DARFMALALSLGRRGQGNVWPNPAVGCVIVQGTRIIGRGWTHPGGRPHAEPQALAQAGEA 67

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGAT YVTLEPCSH+G++PPCAQ +I  G+ RVV+   D D RV+GRG+  L   GI +
Sbjct: 68  ARGATVYVTLEPCSHHGKTPPCAQALINAGVARVVIATQDDDARVNGRGIAMLRAAGIDV 127

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
                E+E +     +  R    R  +TLK+A S D  I      S  IT   ++   H 
Sbjct: 128 SVGEREAEARADHAGFFCRTDLGRPMLTLKLANSFDGRIATGTGESQWITDAPARRLTHA 187

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +RA+ DA++VG GT   DDP LT R  G+  H P R+++     L L  ++ +TA   P+
Sbjct: 188 MRARHDAVMVGAGTARKDDPSLTVRDLGV-AHQPARVVVSRRLDLPLMGQLARTAADIPL 246

Query: 246 IIVT-ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300
           I+    + DP L   +      ++ C  R    D   +L  L G G+T +  EGG+A+A 
Sbjct: 247 ILCHGTDADPALVRTWSDLGATLLLCAARGAQLDPTDVLRQLAGHGLTRIFCEGGSALAA 306

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
           S I + LVD ++ + + +VIG  G+P      L        F        G D+   +  
Sbjct: 307 SLIEADLVDRLVGFTAGLVIGAEGLPGIGALGLSRLAEAPRFALQSSQRIGPDLLHVWRR 366

Query: 357 K 357
            
Sbjct: 367 N 367


>gi|325124197|gb|ADY83720.1| bifunctional protein ribD [Acinetobacter calcoaceticus PHEA-2]
          Length = 361

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 121/365 (33%), Positives = 186/365 (50%), Gaps = 18/365 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M     D  +M  A+  ++  +  T  NP+V C+IVKD  +IG+G     G PHAEV AL
Sbjct: 1   MSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGQGFHPKAGQPHAEVFAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAGE A+GATAYVTLEPC+HYGR+PPCA+ +++  +++VVV   DP+  V+G+G+Q L 
Sbjct: 61  REAGEHAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILK 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI +   + E         +L        ++ LK+A S D    MA   S  ITG  +
Sbjct: 121 NAGIEVEVGICEDLASKLNQGFLKAMSTGIPYVRLKVASSLDGRTAMASGESKWITGSAA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSK 235
           +  V   RA S A++ GI TV+ADD +L  R     +      P R++LD   +L L++K
Sbjct: 181 RQDVQHWRAISGAVITGIETVIADDCQLNVRSLNNFDIETVAQPKRVVLDRQGRLPLNAK 240

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVEG 294
           I++       ++V       LA      ++ +I  + + LK LL  L     +  +LVE 
Sbjct: 241 ILEN---PETVMVMGPYRQELA------DLGVIQLEIQPLKMLLQTLSKQHQIYDVLVEA 291

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351
           GA ++ +F+   LVD +I Y +  ++G+       +  E    +  F  +       D+ 
Sbjct: 292 GATLSTAFLQEGLVDELISYIAPTLLGKSARAMFNAEFEYMAEQLRFTLLDVTQIDQDIR 351

Query: 352 LEYIG 356
           L  I 
Sbjct: 352 LRLIP 356


>gi|71892014|ref|YP_277744.1| pyrimidine deaminase/reductase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71796120|gb|AAZ40871.1| pyrimidine deaminase/reductase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 379

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 123/373 (32%), Positives = 180/373 (48%), Gaps = 22/373 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RF++ AL+ +      T  NP+V C+IV++  +IG G     G  HAE+ AL  AG  
Sbjct: 9   DKRFLTRALQLAWKGRFTTMPNPNVGCVIVRNNKIIGEGYHIRAGEAHAEIHALRIAGNL 68

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GATAY+TLEPCSHYGR+PPC   +I  GI+RVVV + DP     GRGL  L Q GI +
Sbjct: 69  AQGATAYITLEPCSHYGRTPPCTTALINAGIKRVVVAMLDPHFYARGRGLHLLQQAGIEV 128

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M  E +     +L R       + LK+A S D    M+   S  IT   ++  V  
Sbjct: 129 QHSLMLPEAESINRGFLKRIRTGFPWVKLKLAASLDGRTAMSSGESKWITSIQARQDVPR 188

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
            RA+SD IL   GTVLADDP+L  R     +             P+R+I+D   ++    
Sbjct: 189 FRAESDVILSTAGTVLADDPKLNVRWECFSDEMKRIYANNQIRQPLRVIIDSANRVLPTH 248

Query: 235 KIIKTALLAPVIIVTENDD----PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           ++I+      +++V    D    P         +IN       +L +L+  L  R + ++
Sbjct: 249 RVIR--YEGKILLVRLKKDHRNWPSSVEQLLLSSINCHGHHRINLTELMQHLGYREINNI 306

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY----LEKNFMCVRRDYF 346
            VE GA  +   ++  LVD +ILY++   +G    P  L          K+F  +     
Sbjct: 307 WVEAGATFSGVLLDIGLVDELILYQAIKFLGSDARPLCLLPNIKCLNDIKSFKLLDIKNI 366

Query: 347 GSDVCLEYIGKNL 359
           G D+ L  I K +
Sbjct: 367 GPDLRLRLIPKGM 379


>gi|262280656|ref|ZP_06058439.1| pyrimidine deaminase [Acinetobacter calcoaceticus RUH2202]
 gi|262257556|gb|EEY76291.1| pyrimidine deaminase [Acinetobacter calcoaceticus RUH2202]
          Length = 361

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 122/365 (33%), Positives = 188/365 (51%), Gaps = 18/365 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M     D  +M  A+  ++  +  T  NP+V C+IVKD  +IG G     G PHAEV AL
Sbjct: 1   MSELKKDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGEGFHPKAGQPHAEVFAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +A E+A+GATAYVTLEPC+HYGR+PPCA+ +++  +++VVV   DP+  V+G+G+Q L 
Sbjct: 61  RQAAEQAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILK 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI +   + E   +     +L        ++ LK+A S D    MA   S  ITG ++
Sbjct: 121 NAGIEVEVGICEDLAEKLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGAVA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----HSPMRIILDPHFKLSLDSK 235
           +  V   RA S A++ GI TV+ADD +L  R  G  +      P RIILD   +L L +K
Sbjct: 181 RQDVQHWRAISGAVITGIDTVIADDCQLNVRTLGSVDIETIAQPKRIILDRQGRLPLAAK 240

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEG 294
           I++       ++V       LA      ++ +I  + + LK LL  L  +  +  +LVE 
Sbjct: 241 ILEN---PETVMVMGPYRQELA------DLGVIQLETQPLKVLLQTLSKQYQIYDVLVEA 291

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351
           GA ++ +F+   LVD +I Y +  ++G+       +  E    +  F  +       D+ 
Sbjct: 292 GATLSTAFLQEGLVDELISYIAPTLLGKSARAMFNAEFEYMAQQLRFTLLDVTQLDQDIR 351

Query: 352 LEYIG 356
           L  I 
Sbjct: 352 LRLIP 356


>gi|218668008|ref|YP_002424804.1| riboflavin biosynthesis protein RibD [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|218520221|gb|ACK80807.1| riboflavin biosynthesis protein RibD [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 366

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 129/365 (35%), Positives = 188/365 (51%), Gaps = 12/365 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           +  D  FMS AL  +   +     NP V  ++VKDG VIGRG     G PHAEV AL+EA
Sbjct: 3   TEQDLAFMSEALVLAEQGLYSAHPNPCVGAVLVKDGRVIGRGAHLQAGEPHAEVLALKEA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G  ARGATAYVTLEPCSHYGR+PPCA  +I  GI RVV+ + DP+  V+GRG++ L   G
Sbjct: 63  GAAARGATAYVTLEPCSHYGRTPPCADALIAAGIARVVIAMRDPNPLVAGRGVERLRAAG 122

Query: 124 IIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           ++ +    E+  +     +L R    R  + LK A+S D  + +A   S  +TG  ++  
Sbjct: 123 VVAEEGCLEAAAEALNPGFLRRMRHGRPWLRLKQAMSLDGRVALANGRSQWLTGEAARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           V   RA++ AILVGIGTVLAD+P L  RL       P+++I+D H +   D+ +  T   
Sbjct: 183 VQQERARASAILVGIGTVLADNPRLAPRLEAPLRRYPVKVIMDSHLRTPPDAALFGTPGA 242

Query: 243 APVIIVTENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
             V I    D PV A A        +          D ++++ +L  R +  +LVE G  
Sbjct: 243 --VWIFHGQDAPVAARAALCAAGAELLFCRGTVQGLDWQEVMGMLAERQINEVLVEAGPG 300

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           VA S   + L+D  +LY + +++G    P     P  +      +  ++    G+D+   
Sbjct: 301 VAASLFAAGLIDEWLLYVAPLLLGLDARPVLATGPYSDLAEVPRWSVIQSSRLGNDIKWT 360

Query: 354 YIGKN 358
              + 
Sbjct: 361 LRPQE 365


>gi|116748817|ref|YP_845504.1| riboflavin biosynthesis protein RibD [Syntrophobacter fumaroxidans
           MPOB]
 gi|116697881|gb|ABK17069.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 363

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 122/355 (34%), Positives = 186/355 (52%), Gaps = 14/355 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  ALR +    G TS NP V  ++V+    +  G   + G PHAEV AL +AG++ARGA
Sbjct: 1   MKRALRLAAKGAGRTSPNPMVGAVVVRGETTVAEGFHEFVGGPHAEVNALRQAGDKARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPC+H GR+PPC + +++ G+  VV+ ++DP+  V G G  +L   G+ +   +
Sbjct: 61  TLYVTLEPCNHQGRTPPCTRAVLDSGVATVVIGMEDPNPGVRGGGASFLRSHGLRVHAGI 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E E +     ++        ++TLK AV+ D  I  +   S  I+   S+   H LR  
Sbjct: 121 LEKECRALNQPFIKHVTTGLPYVTLKAAVTLDGAIASSSGDSKWISNERSRKFAHHLRCI 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           SD +L+GIGT LADDP L+ R+        P+RI+LD   +L L+S +++TA   P+++V
Sbjct: 181 SDGVLIGIGTALADDPLLSARIKRRPACRQPVRIVLDSRLRLPLESALVRTAAEFPLMVV 240

Query: 249 TENDD-PVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
              D  P    A       ++          L +LL  L  +G+ SLLVEGGA V  +F+
Sbjct: 241 CGRDAPPTREKALVDAGAEVMRLSSGKGGIHLPELLRALGSKGLCSLLVEGGATVLGAFL 300

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM------CVRRDYFGSDVCL 352
           ++ L D    + +  V+G+    +P+  G   +          VR   FG DV L
Sbjct: 301 DNGLADDFHFFYAPKVLGDP-AGTPMVRGRGRERMADAVPVFDVRVRRFGEDVML 354


>gi|184156566|ref|YP_001844905.1| pyrimidine deaminase [Acinetobacter baumannii ACICU]
 gi|332874950|ref|ZP_08442801.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
           6014059]
 gi|183208160|gb|ACC55558.1| Pyrimidine deaminase [Acinetobacter baumannii ACICU]
 gi|322506453|gb|ADX01907.1| ribD [Acinetobacter baumannii 1656-2]
 gi|323516332|gb|ADX90713.1| pyrimidine deaminase [Acinetobacter baumannii TCDC-AB0715]
 gi|332736893|gb|EGJ67869.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
           6014059]
          Length = 361

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 187/365 (51%), Gaps = 18/365 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M     D  +M  A+  ++  +  T  NP+V C+IVKD  +IG G     G PHAEV AL
Sbjct: 1   MSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGEGFHPKAGQPHAEVFAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AGE+A+GATAYVTLEPC+HYGR+PPCA+ +++  +++VVV   DP+  V+G+G+Q L 
Sbjct: 61  RQAGEQAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILK 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI +   + E         +L        ++ LK+A S D    MA   S  ITG  +
Sbjct: 121 NAGIEVEIGICEDLAAQLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSK 235
           +  V   RA S A++ GI TV+ADD +L  R    ++      P R+ILD   +L L +K
Sbjct: 181 RQDVQHWRAISGAVITGIETVIADDCQLNVRSLHNVDIETVAQPKRVILDRRGRLPLTAK 240

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEG 294
           I++       ++V       LA      ++ +I  + + LK LL  L  +  +  +L+E 
Sbjct: 241 ILEN---PETVMVMGPYRQELA------DLGVIQLEIQPLKTLLQTLSKQYQIYDVLIEA 291

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351
           GA ++ +F+   L+D +I Y +  ++G+       +  E    +  F  +       D+ 
Sbjct: 292 GATLSSAFLQEGLIDEMISYVAPTLLGQSARAMFNADFEYMAQQLRFKLLDVTQLDQDIR 351

Query: 352 LEYIG 356
           L  I 
Sbjct: 352 LRLIP 356


>gi|260889069|ref|ZP_05900332.1| riboflavin biosynthesis protein RibD [Leptotrichia hofstadii F0254]
 gi|260861129|gb|EEX75629.1| riboflavin biosynthesis protein RibD [Leptotrichia hofstadii F0254]
          Length = 371

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 112/369 (30%), Positives = 196/369 (53%), Gaps = 18/369 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D ++M  A+  ++   G  + NP V  ++V+ G VIG G   Y G PHAEV AL+EA 
Sbjct: 4   NIDEKYMRMAIELAKKGAGPVNPNPMVGAVVVQGGKVIGTGYHKYFGEPHAEVYALDEAS 63

Query: 65  EEAR---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           + ++    AT YVTLEPCSHYG++PPCA+ I++ G++R V+   DP+ +V+G+G+Q L  
Sbjct: 64  KNSKDLSDATIYVTLEPCSHYGKTPPCAEKIVKLGLKRCVIGSSDPNPKVAGKGIQILKN 123

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI + + +++ E       +    + K  ++ LK A++ D  I      S  IT   ++
Sbjct: 124 AGIEVTENILKEECDKINQVFFKYIMTKLPYLFLKCAITLDGKIATKTGNSKWITNEAAR 183

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            +V   R +   I+VGI TVLAD+P LT R+      +P RII+DPH K   D  +IK  
Sbjct: 184 EKVQFYRNKFMGIMVGINTVLADNPSLTARIE--NGINPYRIIIDPHLKTEKDYTVIKEN 241

Query: 241 LLAPVIIVTENDDPVLALAF---RKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGG 295
           +    II+T  ++      F       +  ++ +      K++L  +   G+ S+L+EGG
Sbjct: 242 IDEKTIIITSEENKNSEKQFDFSENSKVKFVFLNGTKFSFKEILEKIGMLGIDSILLEGG 301

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN------FMCVRRDYFGSD 349
            ++        ++D+  ++ +  ++G+    S +  G+ +KN         ++ + +G +
Sbjct: 302 QSLISQAFEEDVIDAGEIFIANKILGDTEGKSFIA-GFDKKNMNEAIVLKNIKYNVYGEN 360

Query: 350 VCLEYIGKN 358
           V  E++ K+
Sbjct: 361 VGTEFLQKS 369


>gi|86137887|ref|ZP_01056463.1| riboflavin biosynthesis protein RibD [Roseobacter sp. MED193]
 gi|85825479|gb|EAQ45678.1| riboflavin biosynthesis protein RibD [Roseobacter sp. MED193]
          Length = 357

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 132/356 (37%), Positives = 193/356 (54%), Gaps = 11/356 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL   R   G    NP+V C++V++G ++GRG T  GG PHAEV AL +AG+ ARGA
Sbjct: 1   MALALSLGRRGQGNCWPNPAVGCVLVREGRIVGRGWTQPGGRPHAEVAALAQAGKLARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TA+VTLEPCSH+G++PPCAQ +I+ GI R+V  V D D RVSG+G + L Q GI +   +
Sbjct: 61  TAFVTLEPCSHHGKTPPCAQALIDAGIARLVAAVGDSDPRVSGQGFEMLRQAGIEVEVGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +  E       +  +  + R  +TLK+A S D  I      S  ITG  ++  VH +RA+
Sbjct: 121 LSEEAARDHAGFFYKTEQGRPFVTLKMASSFDGRIATGTGQSKWITGPEARRAVHAMRAR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DA++VG GT  ADDP LT R  G+  H P+R+++  H  L L S++  +A   P+ +  
Sbjct: 181 HDAVVVGAGTARADDPSLTVRDLGV-AHQPVRVVISRHLDLPLISQLATSASKVPLWLCH 239

Query: 250 -ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
            +  D     A+      ++ C  R    D   +L  L   G+T +  EGG+A+A S + 
Sbjct: 240 GQGADVERKQAWEGLGARLLPCASRGVQLDPHDVLQQLGAAGLTRVFCEGGSALAASLLA 299

Query: 305 SRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
             LVD +I + + + IG  G+PS     L        F  +     G+DV   +  
Sbjct: 300 FDLVDELIGFTAGLGIGAEGLPSIGALGLHRLEAANRFDLIETCPVGADVMHRWRR 355


>gi|288941493|ref|YP_003443733.1| riboflavin biosynthesis protein RibD [Allochromatium vinosum DSM
           180]
 gi|288896865|gb|ADC62701.1| riboflavin biosynthesis protein RibD [Allochromatium vinosum DSM
           180]
          Length = 381

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 117/370 (31%), Positives = 181/370 (48%), Gaps = 20/370 (5%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D   M+ A+  +      T  NP V C++V+DG V+G G     G PHAE  AL +AGE
Sbjct: 13  DDRLHMARAIGLAERGRYTTDPNPRVGCVLVRDGQVVGEGWHRRAGEPHAEPLALAQAGE 72

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            AR AT YVTLEPCSH+GR+PPCA+ +I  G+ RVV  + DP+ RV+GRG++ L Q GI 
Sbjct: 73  RARDATVYVTLEPCSHHGRTPPCAEALIAAGVARVVCAMVDPNPRVAGRGVERLRQAGIS 132

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +    +ESE +     ++ R  + R ++  K+A S D    +A   S  IT   ++  V 
Sbjct: 133 VDVGCLESEARALNPGFVKRYEQGRPYVRCKLAASLDGRTALATGESKWITSEAARRDVQ 192

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ---------EHSPMRIILDPHFKLSLDSK 235
             RA S AI+ G+GTVL DDP L  RL   +            P R+++D H++    ++
Sbjct: 193 RWRAGSSAIVTGLGTVLGDDPSLNVRLTAAELSGMAADDPVRQPCRVVVDSHWRTPPTAR 252

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLL 291
           ++   L    +IV        A A       +I         DL  L+  L  R V  +L
Sbjct: 253 LL--GLPGRTLIVGIGPRDTAAAALEAAGAELIRLPEQAGRVDLAALMAELARREVNEVL 310

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFG 347
           +E G+ ++ + + + LVD I+LY++  ++G+          ++          +     G
Sbjct: 311 LEAGSTLSGAAVRAGLVDEILLYQAPCLMGQAAKGLFDLPGIDTMLDRVGLEILEVRSIG 370

Query: 348 SDVCLEYIGK 357
            D+ +     
Sbjct: 371 RDLRIRARPD 380


>gi|119945176|ref|YP_942856.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
           and 5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Psychromonas ingrahamii 37]
 gi|119863780|gb|ABM03257.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Psychromonas ingrahamii 37]
          Length = 387

 Score =  333 bits (854), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 117/373 (31%), Positives = 182/373 (48%), Gaps = 23/373 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D  +M+ A+  ++     +S NP+V C+IV + I++G G     G  HAEV AL  
Sbjct: 6   FSDLDKYYMAHAILLAKKGRFTSSPNPNVGCVIVANNIIVGEGYHQKAGLGHAEVNALAI 65

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A ++A GAT YVTLEPCSH+GR+PPCA  + + GI+RV++ + DP+ +V+G G++ L + 
Sbjct: 66  AKDKAMGATCYVTLEPCSHFGRTPPCALALTKAGIKRVIIAMVDPNPKVAGDGIKILEKA 125

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++++E       ++ R   K   +T+K+A S D    +    S  ITG  ++ 
Sbjct: 126 GIKVDLGLLKNEAMDLNRGFIKRMQVKEPRVTVKLASSLDGKTALKNGQSQWITGPAARC 185

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-------------SPMRIILDPHF 228
            V   RA   A+L G  TV+AD+P L  R   L+ H              P+RIILD H 
Sbjct: 186 DVQYFRALQSAVLTGSATVIADNPSLNVRYESLKNHLDFDLTLRPAEIRQPIRIILDSHN 245

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILV 283
           K++L  K+        ++ +   DD          +I  +          +LK LLT L 
Sbjct: 246 KITLKEKLFSLEGKVLLVSLLPRDDLPKNKNQFSADIEQLIGTDDGHGRINLKVLLTQLS 305

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFM 339
              +  L VE GA +A  F N +LVD  ILY++  ++G           Y +        
Sbjct: 306 DYEINDLWVEAGATLAGEFFNHQLVDQFILYQAPKLMGSQARDLVNLPDYSKMIEVVQLS 365

Query: 340 CVRRDYFGSDVCL 352
                  G+D+ +
Sbjct: 366 LQSVVLIGNDIRI 378


>gi|269839638|ref|YP_003324330.1| riboflavin biosynthesis protein RibD [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269791368|gb|ACZ43508.1| riboflavin biosynthesis protein RibD [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 364

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 125/364 (34%), Positives = 187/364 (51%), Gaps = 15/364 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  +   +G T  NP+V  ++V+DG+VIG+G T   G PHAEV AL EAGE ARGA
Sbjct: 1   MRRALELAESALGRTWPNPAVGAVVVRDGLVIGKGATQPPGGPHAEVVALAEAGEAARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129
             YVTLEPCSH+GR+PPC + II  G+R V     DP+ +V GRG+  L + GI V   +
Sbjct: 61  ILYVTLEPCSHWGRTPPCTEAIIRAGVREVHAATLDPNPKVHGRGVAQLREAGIEVHLGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            E E       +  R       +TLK A++ D  I      S  ITG  ++   H LR +
Sbjct: 121 CEREATRINEGFFKRVRTGLPFVTLKYAMTLDGRIATRTGSSKWITGEEARTCAHRLRDR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNG-----LQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
           +DAI+VG+GTVLADDP LT RL          H P+R+++D   +    + +++      
Sbjct: 181 ADAIMVGVGTVLADDPLLTTRLPPELCGYGGPHHPLRVVVDSRGRTPARAAMLRRDTPGR 240

Query: 245 VIIVTENDDPV-LALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVA 299
            ++      P    LA++     +      D    L+ LL  L   GV + LVEGG  + 
Sbjct: 241 TLVACTTLAPEDRRLAWQDAGAEVAVFAPEDGRVPLEALLRYLGDTGVNTALVEGGGTLH 300

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
            + ++  L D I+ + +  +IG  G P+P+    +      +      +DV +  +G++L
Sbjct: 301 GALLDVGLADKIVAFVAPKLIGGEGAPAPVGGRGVADMASALEL----ADVRVTQVGRDL 356

Query: 360 CLQE 363
            ++ 
Sbjct: 357 LIEG 360


>gi|239502078|ref|ZP_04661388.1| pyrimidine deaminase [Acinetobacter baumannii AB900]
          Length = 361

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 187/365 (51%), Gaps = 18/365 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M     D  +M  A+  ++  +  T  NP+V C+IVKD  +IG G     G PHAEV AL
Sbjct: 1   MSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDNQLIGEGFHPKAGQPHAEVFAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAGE+A+GATAYVTLEPC+HYGR+PPCA+ +++  +++VVV   DP+  V+G+G+Q L 
Sbjct: 61  REAGEQAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILE 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI +   + E         +L        ++ LK+A S D    MA   S  ITG  +
Sbjct: 121 NAGIEVEIGICEDLAAQLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSK 235
           +  V   RA S A++ GI TV+ADD +L  R    ++      P R+ILD   +L L +K
Sbjct: 181 RQDVQHWRAISGAVITGIETVIADDCQLNVRSLHNVDIETVAQPKRVILDRRGRLPLTAK 240

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEG 294
           I++       ++V       LA      ++ +I  + + LK LL  L  +  +  +L+E 
Sbjct: 241 ILEN---PETVMVMGPYRQELA------DLGVIQLEIQPLKTLLQTLSKQYQIYDVLIEA 291

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351
           GA ++ +F+   L+D +I Y +  ++G+       +  E    +  F  +       D+ 
Sbjct: 292 GATLSSAFLQEGLIDEMISYVAPTLLGQSARAMFNADFEYMAQQLRFKLLDVTQLDQDIR 351

Query: 352 LEYIG 356
           L  I 
Sbjct: 352 LRLIP 356


>gi|193076093|gb|ABO10696.2| hypothetical protein A1S_0221 [Acinetobacter baumannii ATCC 17978]
          Length = 361

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 121/365 (33%), Positives = 185/365 (50%), Gaps = 18/365 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M     D  +M  A+  ++  +  T  NP+V C+IVKD  +IG G     G PHAEV AL
Sbjct: 1   MSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDNQLIGEGFHPKAGQPHAEVFAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAGE A+GATAYVTLEPC+HYGR+PPCA+ +++  +++VVV   DP+  V+G+G+Q L 
Sbjct: 61  REAGEHAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILK 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI +   + E         +L        ++ LK+A S D    MA   S  ITG  +
Sbjct: 121 NAGIEVEIGICEDLAAQLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSK 235
           +  V   RA S A++ GI TV+ DD +L  R    ++      P R+ILD   +L L +K
Sbjct: 181 RQDVQHWRAISGAVITGIDTVIVDDCQLNVRSLHNIDIETVAQPKRVILDRRGRLPLTAK 240

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEG 294
           I++       ++V       LA      ++ +I  + + LK LL  L  +  +  +LVE 
Sbjct: 241 ILEN---PETVMVMGPYRQELA------DLGVIQLEIQPLKTLLQTLSKQYQIYDVLVEA 291

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351
           GA ++ +F+   LVD +I Y +  ++G+       +  E    +  F  +       D+ 
Sbjct: 292 GATLSTAFLQEGLVDEMISYVAPTLLGQSARAMFNADFEYMAQQLRFKLLDVTQLDQDIR 351

Query: 352 LEYIG 356
           L  I 
Sbjct: 352 LRLIP 356


>gi|319760369|ref|YP_004124307.1| riboflavin biosynthesis protein RibD [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039083|gb|ADV33633.1| riboflavin biosynthesis protein RibD [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 383

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 124/370 (33%), Positives = 184/370 (49%), Gaps = 23/370 (6%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D  ++S A + +R     T  NP+V C+IVKD  VIG G     G  HAE+ AL  AG
Sbjct: 7   PEDIGYLSRAFQLARKGRFTTMPNPNVGCVIVKDNHVIGEGYHMRAGENHAEINALSVAG 66

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
             A+GATAYVTLEPCSHYGR+PPC   +I+ GI+RVVV + DP   ++GRG+Q L Q GI
Sbjct: 67  NFAKGATAYVTLEPCSHYGRTPPCTTALIKSGIKRVVVSMLDPHPDLTGRGIQLLKQSGI 126

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   +M SE +     ++ R       I LK+A S D  + M+   S  IT   S+  V
Sbjct: 127 LVSHSIMLSEAESINKGFIKRIRTGMPWIKLKLASSLDGRVAMSSGESKWITSVQSRQDV 186

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRL------------NGLQEHSPMRIILDPHFKLS 231
              RA+SD IL    TVL D+P L  R             NG Q   P+R+I+D   ++ 
Sbjct: 187 QCFRAESDVILSTASTVLMDNPRLNVRWSCFSKEMKNIYINGNQIRHPLRVIIDSTNRIL 246

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY----CDCRDLKKLLTILVGR-G 286
              + I+      +++  + D+     +  +  ++ I      +  +LKKL+  L     
Sbjct: 247 PTHRFIQNEGGV-ILVRIKKDNLNWPKSVEQLLVSPIVNKSGLNQINLKKLMQYLACYLK 305

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVR 342
           + S+ VE G  ++ + ++  LVD +ILY++   +G    P      L +    K F  + 
Sbjct: 306 INSVWVESGPTLSGALLDIGLVDEVILYQAIKFLGSNAKPLCLLPNLNKLSDIKTFKLID 365

Query: 343 RDYFGSDVCL 352
               G D+ L
Sbjct: 366 ITSIGPDIRL 375


>gi|260556402|ref|ZP_05828621.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii ATCC
           19606]
 gi|260410457|gb|EEX03756.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii ATCC
           19606]
          Length = 361

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 187/365 (51%), Gaps = 18/365 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M     D  +M  A+  ++  +  T  NP+V C+IVKD  +IG G     G PHAEV AL
Sbjct: 1   MSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGEGFHPKAGQPHAEVFAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AGE+A+GATAYVTLEPC+HYGR+PPCA+ +++  +++VVV   DP+  V+G+G+Q L 
Sbjct: 61  RQAGEQAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILK 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI +   + E         +L        ++ LK+A S D    MA   S  ITG  +
Sbjct: 121 NAGIEVEIGICEDLAAKLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSK 235
           +  V   RA S A++ GI TV+ADD +L  R    ++      P R+ILD   +L L +K
Sbjct: 181 RQDVQHWRAISGAVITGIDTVIADDCQLNVRSLHNIDIETVAQPKRVILDRRGRLPLTAK 240

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEG 294
           I++       ++V       LA      ++ +I  + + LK LL  L  +  +  +L+E 
Sbjct: 241 ILEN---PETVMVMGPYRQELA------DLGVIQLEIQPLKTLLQTLSKQYQIYDVLIEA 291

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351
           GA ++ +F+   L+D +I Y +  ++G+       +  E    +  F  +       D+ 
Sbjct: 292 GATLSSAFLQEGLIDEMISYVAPTLLGQSARAMFNADFEYMAQQLRFKLLDVIQLDQDIR 351

Query: 352 LEYIG 356
           L  I 
Sbjct: 352 LRLIP 356


>gi|126733197|ref|ZP_01748944.1| riboflavin biosynthesis protein RibD [Roseobacter sp. CCS2]
 gi|126716063|gb|EBA12927.1| riboflavin biosynthesis protein RibD [Roseobacter sp. CCS2]
          Length = 369

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 127/355 (35%), Positives = 192/355 (54%), Gaps = 8/355 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DARFM+ AL   R  +G    NP+V C+IV D  ++GRG TA GG PHAE  AL +AG  
Sbjct: 6   DARFMALALMLGRRGMGRVWPNPAVGCVIVNDCNIVGRGWTADGGRPHAEAIALAQAGSA 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GAT YVTLEPC+H+G++PPC+  +I+  + RVV+  DDPD RV+GRG+  L   G+ +
Sbjct: 66  ADGATVYVTLEPCAHHGKTPPCSNALIKANVARVVIAADDPDERVNGRGIAMLRDAGVQV 125

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +           +L+R  + R  +TLK+A + D  I  A   S  ITG  ++  VH+
Sbjct: 126 DCGVGNKAAARDHAGFLSRITQGRPFVTLKLAGTLDGRIATATGESQWITGPEARRMVHM 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +RA+ DA++VG GTV ADDP LT R  G+  H P+R+++    K+ + S++ +TA   PV
Sbjct: 186 MRARHDAVMVGAGTVRADDPSLTVRGLGI-VHQPVRVVVSRALKIPVTSQLAQTARDTPV 244

Query: 246 IIVTENDDPVLALAFRKK--NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            +    +  V     +           +  D   ++T L  +G+T +  EGG   A S +
Sbjct: 245 WLCHGPEADVAGWTAKGAVSLPCATAANQVDPHAIMTTLADQGITRVFCEGGGMFAASLL 304

Query: 304 NSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           N+ LVD ++++ +   IG  G P      +++      F        G D+C  +
Sbjct: 305 NAGLVDQLVVFSAGAAIGAEGTPMLAAMGVDQLIGAPRFALESVRPIGGDICHVW 359


>gi|194016088|ref|ZP_03054703.1| riboflavin biosynthesis protein RibD [Bacillus pumilus ATCC 7061]
 gi|194012443|gb|EDW22010.1| riboflavin biosynthesis protein RibD [Bacillus pumilus ATCC 7061]
          Length = 361

 Score =  333 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 114/360 (31%), Positives = 187/360 (51%), Gaps = 10/360 (2%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M  A+  ++   G TS NP V  +IV+ G ++G G     G PHAE+ AL  AGE
Sbjct: 3   DDVFYMKLAIANAKAMKGQTSPNPLVGAVIVQQGEIVGMGAHMKAGEPHAEIHALHMAGE 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           +A GA  YVTLEPCSH+G++ PC + II+ G++RVV+   DP+  V+G+G+  L Q GI 
Sbjct: 63  KAEGAHLYVTLEPCSHHGKTGPCTEAIIKSGVKRVVIATQDPNPLVAGKGITVLKQAGIE 122

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           VD  + + E       +         ++ LK A+S D  I  A   S  ITG  ++ +V 
Sbjct: 123 VDEGICKQEADRLNVPFFHFIQSDLPYVILKSAISLDGKIATAQLESKWITGTEARQEVQ 182

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR ++DA++ G+ T++ DD  L  + +      P+R+ILD   ++ L +K +       
Sbjct: 183 QLRQEADAVITGVETIIQDDAGLIVKDSIAS--QPIRVILDSTLRIPLHAKCLTDRRAET 240

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           +I  +   D        +K  ++         D+  +L +L  R V S+LVE G  V+ S
Sbjct: 241 IICTSHMYDQKKYEQLIEKGHHVYVTSGEQRTDIHDVLRMLKERSVMSVLVEAGGNVSAS 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           F+ + LV+  ++Y + ++IG    P+  E   ++K    +R     +DV    +GK++ +
Sbjct: 301 FLEASLVNEAVIYMAPLLIGGKQAPTFFEGAGVKKLKEAIRP----ADVEYSMVGKDIKM 356


>gi|254500590|ref|ZP_05112741.1| riboflavin biosynthesis protein RibD [Labrenzia alexandrii DFL-11]
 gi|222436661|gb|EEE43340.1| riboflavin biosynthesis protein RibD [Labrenzia alexandrii DFL-11]
          Length = 375

 Score =  333 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 164/372 (44%), Positives = 221/372 (59%), Gaps = 16/372 (4%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-----IVIGRGVTAYGGCPHAE 56
            ++  D RFM+AA R +R  +G    NP+VA LIV++      +++GRGVT+  G  HAE
Sbjct: 3   SITETDNRFMAAAERLARRGLGRVWPNPAVAALIVQENSEGVPVLVGRGVTSRPGMAHAE 62

Query: 57  VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           V AL +AGE A+GAT YVTLEPCSHYGR+PPC+  +IE G+ RVVV + DP+ RVSGRG+
Sbjct: 63  VNALTQAGELAKGATCYVTLEPCSHYGRTPPCSLALIEAGVSRVVVGMMDPNPRVSGRGV 122

Query: 117 QWLSQKGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
             L   GI  V  + E   K     +  RQ   R  + LK+AVS+D  IG  G G + I+
Sbjct: 123 GMLQDAGIELVTGVRERALKDLYRGFTYRQRRHRPSVFLKLAVSKDGFIGREGEGQIKIS 182

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
           G IS   VH  RA SDAILVGIGT LADDP+LTCRL GL   SP+R+++D   +L L SK
Sbjct: 183 GPISMRMVHGFRAASDAILVGIGTALADDPQLTCRLPGLHARSPVRVVVDRQARLPLMSK 242

Query: 236 IIKTALLAPVIIVTEN-DDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSL 290
           +++T +  PV +V  N  D     A     +NII         D   +L+ L  RG+T L
Sbjct: 243 LVRTCVDVPVWLVCGNAADADKVNALAAAGVNIIRVPATQTGIDPDVILSALATRGITRL 302

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYF 346
           +VEGGA +A SF+N+ L+D + +    + IGEGGIP+     L     +  F  +   Y 
Sbjct: 303 MVEGGARLASSFLNAGLIDDLCVVTGDMEIGEGGIPALHDLDLANVLTDPQFARIGAGYL 362

Query: 347 GSDVCLEYIGKN 358
           G+D    Y+ K+
Sbjct: 363 GAD-RYTYLRKS 373


>gi|78186602|ref|YP_374645.1| riboflavin biosynthesis protein RibD [Chlorobium luteolum DSM 273]
 gi|78166504|gb|ABB23602.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chlorobium
           luteolum DSM 273]
          Length = 366

 Score =  333 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 120/362 (33%), Positives = 184/362 (50%), Gaps = 13/362 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++  DA  M+  +  +    G  S NP V  LIV DG VIG G     G PHAEV A+  
Sbjct: 2   LTEADACHMARCIELALQGAGSVSPNPMVGSLIVCDGSVIGEGYHMQCGGPHAEVNAIAA 61

Query: 63  AGE--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             +      +T YV LEPCSH+GR+PPC+  IIE  I RVVV   DP+ +V+GRG+  L 
Sbjct: 62  VSDPSLLSRSTLYVNLEPCSHFGRTPPCSDLIIEKMIPRVVVGCRDPNPKVAGRGIMRLR 121

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             G+ + + ++E+E      A++T   + R  + LKIA + D  I  A   S  ITG  +
Sbjct: 122 DSGVDVYEGVLEAECLRLNEAFITSHTKGRPFVALKIAETLDGRIATADGASKWITGSEA 181

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           + +VH LR+  DA+L G  TVL D  +LT R   ++  +P+R++LD   ++  D+ +  +
Sbjct: 182 RREVHRLRSTYDAVLAGAATVLLDRAQLTVR--DVEGRNPLRVVLDSGLRVPFDAPVFSS 239

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGG 295
                V           A A  KK I +++        DL ++L  L  R V SLLVE G
Sbjct: 240 DAPTLVFAAGRMQGTTEASAAEKKGIEVVFVREVPGGLDLSQVLRELHRRDVLSLLVESG 299

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVC 351
           + ++ +F+ + L D ++++ +  + G   +PS     +E           +   FG D+ 
Sbjct: 300 SRLSAAFVRAGLADKLLMFIAPKLFGADALPSFAPLAVEAPSGAVQLEFGQSKAFGRDIL 359

Query: 352 LE 353
           LE
Sbjct: 360 LE 361


>gi|254286058|ref|ZP_04961019.1| riboflavin biosynthesis protein RibD [Vibrio cholerae AM-19226]
 gi|150423968|gb|EDN15908.1| riboflavin biosynthesis protein RibD [Vibrio cholerae AM-19226]
          Length = 367

 Score =  333 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 125/375 (33%), Positives = 185/375 (49%), Gaps = 29/375 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +AGE   GATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+GRG+Q L
Sbjct: 61  MRQAGELTHGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGRGVQML 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++E++ +     +L R      ++ LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R                   P+R+ILD  
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRG 286
            +L  +  + +T   +PV+ V   +  +   A   K          DL++LL  L     
Sbjct: 241 HQLHPELALYQTP--SPVLRVASENAELCISAENGK---------LDLRELLAQLAQQHN 289

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVR 342
           V  L VE G+ +A S I  +LVD IILY +  ++G  G       G  E           
Sbjct: 290 VHQLWVEAGSQLAKSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIED 349

Query: 343 RDYFGSDVCLEYIGK 357
               G+D+ +    K
Sbjct: 350 CRMVGADLRIIATPK 364


>gi|299771887|ref|YP_003733913.1| pyrimidine deaminase [Acinetobacter sp. DR1]
 gi|298701975|gb|ADI92540.1| pyrimidine deaminase [Acinetobacter sp. DR1]
          Length = 361

 Score =  333 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 187/365 (51%), Gaps = 18/365 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M     D  +M  A+  ++  +  T  NP+V C+IVKD  +IG G     G PHAEV AL
Sbjct: 1   MSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGEGFHPKAGQPHAEVFAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +A E+A+GATAYVTLEPC+HYGR+PPCA+ +++  +++VVV   DP+  V+G+G+Q L 
Sbjct: 61  RQAAEQAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILK 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI +   + E+  +     +L        ++ LK+A S D    MA   S  ITG ++
Sbjct: 121 NAGIEVEVGICENLAEKLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGAVA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG----LQEHSPMRIILDPHFKLSLDSK 235
           +  V   RA S A++ GI TV+ADD +L  R  G         P R++LD   +L L++K
Sbjct: 181 RQDVQHWRAISGAVITGIETVIADDCQLNVRSLGHIDIETVAQPKRVVLDRQGRLPLNAK 240

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVEG 294
           I++       ++V       LA      ++ +I  + + LK LL  L     +  +LVE 
Sbjct: 241 ILEN---PETVLVMGPYRQELA------DLGVIQLEIQPLKILLQTLSKQHQIYDVLVEA 291

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351
           GA ++ +F+   LVD +I Y +   +G+       +  E    +  F  +       D+ 
Sbjct: 292 GATLSTAFLQEGLVDELISYIAPTFLGKSARAMFNAEFEYMAQQLRFTLLDVTQLDQDIR 351

Query: 352 LEYIG 356
           L  I 
Sbjct: 352 LRLIP 356


>gi|39935793|ref|NP_948069.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris
           CGA009]
 gi|39649646|emb|CAE28168.1| putative riboflavin-specific deaminase / reductase
           [Rhodopseudomonas palustris CGA009]
          Length = 389

 Score =  332 bits (852), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 153/362 (42%), Positives = 207/362 (57%), Gaps = 12/362 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           S D RFM  AL   R   G T+ NP+V  ++VKDG+++GRG T  GG PHAEV+AL  AG
Sbjct: 25  SADRRFMQLALALGRRGQGRTAPNPAVGAVLVKDGVIVGRGWTQDGGRPHAEVEALRRAG 84

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           + ARGAT YVTLEPCSH+GR+PPCA  +I  GI RVV  ++DP+  V+G+G   L   GI
Sbjct: 85  DAARGATLYVTLEPCSHHGRTPPCADAVIAAGIARVVSAIEDPNPLVAGQGHARLRTAGI 144

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   +   E       ++ R  ++R H+TLK+AVS D  I  AG   V ITG  +  + 
Sbjct: 145 AVEIGVCAEEAARDHAGHIRRIRDRRPHVTLKLAVSADGKIAAAGHKPVAITGEAANART 204

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           HLLRA+SDA+L+GIGTVLADDPELTCRL G+   SP+R++LD   ++   SK++ +A   
Sbjct: 205 HLLRARSDAVLIGIGTVLADDPELTCRLPGMAAQSPIRVVLDRSLRIPAASKLLHSARTT 264

Query: 244 PVII-VTENDDPVLALAFRKKNINIIY------CDCRDLKKLLTILVGRGVTSLLVEGGA 296
           P+ +  +E  +   A         +I+          DL  +L  L  +GVT L VEGGA
Sbjct: 265 PLWLMASEIAEAATAARLGAAGAEVIHVADCADTPGLDLPAVLHALADKGVTRLFVEGGA 324

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
            VA S +   L D I L+RS   IG  GI +    PL       ++     +  G+D   
Sbjct: 325 RVAASLVAGELADEIWLWRSDNAIGADGIDALHDLPLTAMTDSPHWRVRTTERVGADTLT 384

Query: 353 EY 354
            Y
Sbjct: 385 IY 386


>gi|320157206|ref|YP_004189585.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio vulnificus MO6-24/O]
 gi|319932518|gb|ADV87382.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Vibrio vulnificus MO6-24/O]
          Length = 368

 Score =  332 bits (852), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 115/367 (31%), Positives = 185/367 (50%), Gaps = 28/367 (7%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            ++ D + M  A+  ++  +  T+ NP+V C++++DG ++G G     G PHAEV A+  
Sbjct: 4   FTAIDRQMMLRAIALAKRGLYTTAPNPNVGCVLLRDGEIVGEGFHFRAGEPHAEVHAMRM 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG++A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RVV  ++DP+ +V+GRG   L + 
Sbjct: 64  AGDKAKGATAYVTLEPCSHYGRTPPCAEGLIKAGVSRVVCAMEDPNPQVAGRGFAMLREA 123

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++++E +    A++ R       + LK+A S D    +A   S  IT   ++ 
Sbjct: 124 GIEVSVGLLQTEAEALNPAFIKRMKTGMPFVQLKMAASLDGQTALANGKSQWITSPQARR 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V   RAQS AIL    TVLAD+  L  R + L               P R++LD   +L
Sbjct: 184 DVQRFRAQSGAILSTSKTVLADNASLNVRWSELPSSVQLALPQEQLRQPTRVVLDRQAEL 243

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-RGVTS 289
           S + K+ +T     +I+  + D P            +      DL +L   L   + +  
Sbjct: 244 SPELKLYQTEGE-RLIVGPKGDLPA----------PLDEHGQIDLPQLFAQLSQTQSINH 292

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDY 345
           L +E GA +A   I  +LVD +I+Y +  ++G  G        L+      +        
Sbjct: 293 LWIEAGATLAAKLIKHQLVDELIVYLAPKLMGSDGRGLIGALGLQAMSHVIDLDIKDVRM 352

Query: 346 FGSDVCL 352
            G D+ +
Sbjct: 353 VGPDIRI 359


>gi|192291382|ref|YP_001991987.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris
           TIE-1]
 gi|192285131|gb|ACF01512.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris
           TIE-1]
          Length = 389

 Score =  332 bits (852), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 155/362 (42%), Positives = 209/362 (57%), Gaps = 12/362 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           S D RFM  AL   R   G T+ NP+V  ++VKDG+++GRG T  GG PHAEV+AL  AG
Sbjct: 25  SADRRFMQLALALGRRGQGRTAPNPAVGAVLVKDGVIVGRGWTQDGGRPHAEVEALRRAG 84

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           + ARGAT YVTLEPCSH+GR+PPCA  +I  GI RVV  ++DP+  V+G+G   L   GI
Sbjct: 85  DAARGATLYVTLEPCSHHGRTPPCADAVIAAGIARVVSAIEDPNPLVAGQGHARLRAAGI 144

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   +   E       ++ R  ++R H+TLK+AVS D  I  AG   V ITG  +  + 
Sbjct: 145 AVEIGVCAEEAARDHAGHIRRIRDRRPHVTLKLAVSADGKIAAAGHKPVAITGEAANART 204

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           HLLRA+SDA+LVGIGTVLADDPELTCRL G+   SP+R++LD   ++   SK++ +A  +
Sbjct: 205 HLLRARSDAVLVGIGTVLADDPELTCRLPGMAAQSPIRVVLDRALRIPAASKLLHSARTS 264

Query: 244 PVII-VTENDDPVLALAFRKKNINIIY------CDCRDLKKLLTILVGRGVTSLLVEGGA 296
           P+ +  +E  +   A         +I+          DL  +L  L  +GVT LLVEGGA
Sbjct: 265 PLWLMASEIAEAATAARLGAAGAEVIHVADCADTPGLDLPAVLHALADKGVTRLLVEGGA 324

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
            VA S +   L D I L+RS   IG  GI +    PL       ++     +  G+D   
Sbjct: 325 RVAASLVTGELADEIWLWRSDNPIGADGIDALHDLPLTAMTDSPHWRVRTTERVGADTLT 384

Query: 353 EY 354
            Y
Sbjct: 385 IY 386


>gi|171315490|ref|ZP_02904726.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria MEX-5]
 gi|171099327|gb|EDT44065.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria MEX-5]
          Length = 373

 Score =  332 bits (852), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 181/368 (49%), Gaps = 25/368 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +   +  T+ NP V C+IVKDG VIG G T   G  HAEVQAL+ 
Sbjct: 2   FSDTDFAHMQRALTLAARGMYTTAPNPRVGCVIVKDGNVIGEGFTQPAGQDHAEVQALKN 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G +  G+T YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L
Sbjct: 62  ARTRGHDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++ +E       +++R    R  + +K A S D    +    S  ITG  
Sbjct: 122 RDAGIDVRCGLLANEAGELNIGFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H  RA++ AIL GIGTV  D+P LT R        P R+++D    L LD+++++
Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVR-GIDTPRQPQRVLVDSRLDLPLDARLLE 240

Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291
               AP++I     D    V A   + +   I+         DL  +L  L  RGV  L 
Sbjct: 241 G---APLLIFCGRLDAAGEVRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344
           VE G  +  S +  + VD +++Y +  ++G           P+ L+             +
Sbjct: 298 VEAGHKLNGSLLREQCVDELLVYLAPSLLGSDAAGMFDLAAPASLDA---RTRLAFHSVE 354

Query: 345 YFGSDVCL 352
             G D+ +
Sbjct: 355 RIGDDLRI 362


>gi|212212876|ref|YP_002303812.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Coxiella
           burnetii CbuG_Q212]
 gi|212011286|gb|ACJ18667.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Coxiella
           burnetii CbuG_Q212]
          Length = 354

 Score =  332 bits (852), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 116/359 (32%), Positives = 180/359 (50%), Gaps = 14/359 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  SS D  ++  AL  +    G  + NPSV  ++VKD  +I  G     G PHAEV+A+
Sbjct: 1   MNDSSLD--YLKKALSLAEIRRGFCAPNPSVGAVVVKDDKIISTGFHKRSGLPHAEVEAI 58

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           +  G++ARGA  YVTLEPC H+G++PPC   II+ GI+ V   + DP++ V G+G++ L 
Sbjct: 59  KSLGDKARGAALYVTLEPCCHFGKTPPCTDLIIQSGIKAVYYGLHDPNLAVCGKGIEQLQ 118

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           + G+    +   E   F  +Y      KR  +T K+A+S D  I       V +TG   +
Sbjct: 119 RAGVNCFLIELPEINAFYESYRYWIKHKRPWVTAKLALSLDGKIAGNEGKPVRLTGEGLR 178

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              H  R +SDA+L  I T+L DDP+L  RL G +   P+ I LD H +L L++ +I   
Sbjct: 179 QYTHEWRKKSDALLTTINTILTDDPKLNVRLQGEEIKKPIYI-LDTHLRLPLNA-LIHQT 236

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGA 296
             + ++      D        +KNI  I      +  DL ++L ++   G+  L +E G 
Sbjct: 237 AESIIVFHGNEADKKQQQRLMQKNIRCIEIARRSEGLDLNEVLDVIGNDGIHDLWIEAGG 296

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM--CVRRDYFGSDVCLE 353
               SF+   L++  ++Y +  ++G   +P+      L  +F    V    FG DV  E
Sbjct: 297 TCFQSFLKENLINRALIYIAPKILGSTAMPAF----QLPFSFSGYSVEWRQFGEDVMGE 351


>gi|213969282|ref|ZP_03397420.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|213925960|gb|EEB59517.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
          Length = 366

 Score =  332 bits (852), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 126/356 (35%), Positives = 181/356 (50%), Gaps = 20/356 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL  +R  +  T  NP V C+IV+DG ++G+G  A  G PHAEV AL EAGE ARGA
Sbjct: 1   MAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALREAGELARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPCSH GR+PPCA  +I  G+ RVV  + DP+ +V+G GL  L   GI +   +
Sbjct: 61  TAYVTLEPCSHQGRTPPCADALISAGLARVVAAMQDPNPQVAGSGLLRLMTAGISVQCGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +ESE +     ++ R    R ++ +K+A+S D    MA   S  ITG  +++ V  LRAQ
Sbjct: 121 LESEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARSAVQRLRAQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSLDSKIIKT 239
           S  +L G  TVLAD   LT R + L              P+R+++D   ++ LD+   + 
Sbjct: 181 SSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVPLDTPFFQA 240

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVTSLLVEGGA 296
                 ++VT              +  +   D     DL++L+  L  RGV  +LVE G 
Sbjct: 241 GSA---LVVTCAAASARGRYQEDGHEMLALADSAGHVDLRRLMGELGARGVNEVLVEAGP 297

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSD 349
            +A +F    LVD   L+ +   +G    P    PL +         +     G+D
Sbjct: 298 RLAGAFTRLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIIEMRAVGND 353


>gi|170703035|ref|ZP_02893863.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria
           IOP40-10]
 gi|170132059|gb|EDT00559.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria
           IOP40-10]
          Length = 373

 Score =  332 bits (852), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 182/368 (49%), Gaps = 25/368 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +   +  T+ NP V C+IVKDG VIG G T   G  HAEVQAL++
Sbjct: 2   FSDTDFAHMQRALTLAARGMYTTAPNPRVGCVIVKDGNVIGEGFTQPAGQDHAEVQALKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G +  G+T YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L
Sbjct: 62  ARARGHDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++ +E       +++R    R  + +K A S D    +    S  ITG  
Sbjct: 122 RDAGIDVRCGLLANEAGELNIGFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H  RA++ AIL GIGTV  D+P LT R        P R+++D    L LD+++++
Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVR-GIDTPRQPQRVLVDSRLDLPLDARLLE 240

Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291
               AP++I     D    V A   + +   I+         DL  +L  L  RGV  L 
Sbjct: 241 G---APLLIFCGRLDASGEVRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344
           VE G  +  S +  + VD +++Y +  ++G           P+ L+             +
Sbjct: 298 VEAGHKLNGSLLREQCVDELLVYLAPSLLGSDAAGMFDLAAPASLDA---RTRLAFHSVE 354

Query: 345 YFGSDVCL 352
             G D+ +
Sbjct: 355 RIGDDLRI 362


>gi|209694491|ref|YP_002262419.1| pyrimidine deaminase/pyrimidine reductase (riboflavin biosynthesis
           protein RibD) [Aliivibrio salmonicida LFI1238]
 gi|208008442|emb|CAQ78607.1| pyrimidine deaminase/pyrimidine reductase (riboflavin biosynthesis
           protein RibD) [Aliivibrio salmonicida LFI1238]
          Length = 373

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 119/374 (31%), Positives = 186/374 (49%), Gaps = 29/374 (7%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  +  D   M  A++ ++  +  T+ NP+V C++VK+G+++G G     G PHAEV AL
Sbjct: 1   MKFTPQDHLMMQRAIQLAKRGIYTTAPNPNVGCVLVKNGLIVGEGAHLKAGEPHAEVHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +A E A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+GRGL  L 
Sbjct: 61  RQASENAKGATAYVTLEPCSHYGRTPPCAEGLIKAGVVKVICAMVDPNPQVAGRGLAMLE 120

Query: 121 QKGIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI     ++E+E +    ++LTR    +  + LK+A S D    +    S  IT   +
Sbjct: 121 AAGIETASGLLETESRALNPSFLTRMETGKPFVQLKMAASLDGKTALKNGVSQWITSKEA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228
           +  V   RAQ+  IL    TV+ D+  L  R + L               P+R+ILD   
Sbjct: 181 RQDVQRYRAQAGVILSTAKTVIEDNASLNVRWSDLPNSIQESYLEAEVRQPLRVILDRQH 240

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILV 283
           +L+ +  +  T       +VT +  P   L+  + +   +YCD  +     L  ++  + 
Sbjct: 241 QLTSELALFNTTGN----VVTVSHQPSHPLSHPESH---LYCDLDNNKQLVLSDVIQKIA 293

Query: 284 -GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNF 338
               V  L VE GA +A S I   LVD +I+Y +  ++G  G        LE      N 
Sbjct: 294 QEHNVNHLWVEAGATLAASMICEGLVDELIIYLAPKLMGADGRSIVNLIGLEAMSEAINL 353

Query: 339 MCVRRDYFGSDVCL 352
                   G D+ +
Sbjct: 354 DISDIRMVGKDIRI 367


>gi|149174623|ref|ZP_01853249.1| riboflavin biosynthesis protein RibD [Planctomyces maris DSM 8797]
 gi|148846733|gb|EDL61070.1| riboflavin biosynthesis protein RibD [Planctomyces maris DSM 8797]
          Length = 377

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 116/358 (32%), Positives = 184/358 (51%), Gaps = 18/358 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  AL  +R   G    NP+V  +IV     +IG G     G PHAE+ AL  AGE+++G
Sbjct: 14  MHRALELARRGTGSVEPNPAVGSIIVDHSLKLIGEGYHQQCGGPHAEIHALNMAGEQSQG 73

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
            T YVTLEPC H G++ PC+Q +I  GI++VV+ + DP   V G G++ L Q GI +   
Sbjct: 74  KTIYVTLEPCCHQGKTGPCSQALIRAGIKKVVIAMRDPAPHVDGGGIEELKQAGIEVEVG 133

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++ESE +  +  ++ R  +    I  K A++ D  I      S  I+   S+ +VH LR 
Sbjct: 134 LLESEAQALVRPFVKRVTQGLPWIHAKWAMTLDGKIATRTGHSQWISNPRSRERVHELRG 193

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DAI+VG  T  ADDP LT R  G  +  P RI++D   +LS+ S++++T   APVI+V
Sbjct: 194 RMDAIMVGQRTATADDPLLTARPPG--KRIPARIVIDSQARLSVQSQLVQTVAEAPVIVV 251

Query: 249 -TENDDPVLALAFRKKNINIIYCDC--------RDLKKLLTILVGRGVTSLLVEGGAAVA 299
              +      L   +  + ++             +L+  +  L  R +T++LVEGG ++ 
Sbjct: 252 AHPSASQKKILQLEQAGVEVLQFSNCTSENESQPNLRLCMQELARRDMTNILVEGGGSLL 311

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCL 352
            S  + RL+D + ++ +  +IG     +P+    LE      N    +     SD+ +
Sbjct: 312 GSCFDQRLIDEVHVFIAPKIIGGAEAVTPIAGKGLEMIPELHNLQDYQIQQLDSDIYV 369


>gi|303228926|ref|ZP_07315736.1| riboflavin biosynthesis protein RibD [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516340|gb|EFL58272.1| riboflavin biosynthesis protein RibD [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 406

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 122/391 (31%), Positives = 181/391 (46%), Gaps = 41/391 (10%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++   G TS NP V  ++VK+  ++G G     G  HAEV AL+ AG+ 
Sbjct: 4   DELYMKRAISLAKMATGHTSPNPLVGAVVVKNNTIVGEGYHHKAGEAHAEVHALDAAGDN 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGAT YVTLEPC+HYG++PPCA+ ++E GI RVV+   DP+  V+G+G+Q L++ GI +
Sbjct: 64  ARGATLYVTLEPCAHYGKTPPCAKRVVESGIARVVIGSTDPNPLVAGKGIQILTEAGIEV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +   E       + T     +  +T+K A+S D  I      S  IT   S+   H+
Sbjct: 124 TTDVCVDECIQLNEHFFTFIQTHKPFVTIKSAMSLDGKIATFTGQSQWITNESSRKDGHI 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL------------------NGLQEHSPMRIILDPH 227
           LRA  DA+LVGIGT+LADDP L CRL                  N L+ H P  IILD  
Sbjct: 184 LRASHDAMLVGIGTILADDPLLNCRLTRDELYEALINRHDVSIDNTLEVHQPDIIILDSQ 243

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-------------- 273
            +   D+K+        +I V +       +A       +     +              
Sbjct: 244 GRTPTDAKVFTIPNRKVIIYVAKGCPEQRRIALANVGAIVEELPTKSVRQGRTTDVAIDI 303

Query: 274 ---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
              D++  L  L  +  TS+LVEGG+ +  SF+ S   D I+ Y   +VIG     + + 
Sbjct: 304 KKIDIQACLEHLGEQEYTSVLVEGGSTIISSFVESLAFDKIVTYIGNLVIGGANSTAAVG 363

Query: 331 EGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
                                 +++ +E   
Sbjct: 364 GTGFATLHEAPTLEFASSRILDNNIRIESYR 394


>gi|85712650|ref|ZP_01043696.1| Riboflavin-specific deaminase/reductase [Idiomarina baltica OS145]
 gi|85693500|gb|EAQ31452.1| Riboflavin-specific deaminase/reductase [Idiomarina baltica OS145]
          Length = 373

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 113/360 (31%), Positives = 176/360 (48%), Gaps = 16/360 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  +R     T  NP+V C+IVKD  ++G G     G PHAEV AL +AG +
Sbjct: 10  DHLYMHRALELARKGRFTTGPNPAVGCVIVKDASIVGEGWHQKAGEPHAEVFALRQAGTQ 69

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+ ATAYVTLEPCSH GR+PPC   +I   + RVV+ + DP+  VSGRG+  L    I +
Sbjct: 70  AKHATAYVTLEPCSHQGRTPPCVDALINAEVARVVIAMQDPNPVVSGRGIHKLHDADIEV 129

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              + E+  +     ++ R   +  ++ +K+A S D    ++   S  ITG  ++  V +
Sbjct: 130 RVGLFETAARALNPGFIHRMQTQLPYVRVKLASSLDGRTALSNGVSQWITGAAARADVQV 189

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE--------HSPMRIILDPHFKLSLDSKII 237
            RAQ+DAIL G  TVL D+P L  R                P+R+I+D   ++  D ++ 
Sbjct: 190 WRAQADAILTGADTVLVDNPRLNVRPEQWPNGIEKPLFFKQPVRVIIDGKNRIHDDLRLF 249

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGA 296
              +  PV +V   + P        + I       R DL   L  L  R +  +  E GA
Sbjct: 250 --EVETPVFVVRTTEAPASRHRHCHEIIAKADSQGRVDLHDALKELALREINLVWTECGA 307

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
            +A +  N+++V+ ++ Y++  V+G           L +     +F  + R   G D+ +
Sbjct: 308 QLAGALFNAQVVNELVYYQANKVLGSDARSMIALQELTQLDDALSFNVLERRMVGEDIRV 367


>gi|94500359|ref|ZP_01306891.1| riboflavin-specific deaminase/reductase [Oceanobacter sp. RED65]
 gi|94427394|gb|EAT12372.1| riboflavin-specific deaminase/reductase [Oceanobacter sp. RED65]
          Length = 370

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 127/369 (34%), Positives = 192/369 (52%), Gaps = 22/369 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           MP S  D  FM+ A++ ++  +  T  NP V C++VK+G +IG G     G  HAEV AL
Sbjct: 1   MP-SHID--FMARAIQLAKQGLYSTDPNPRVGCVLVKEGNIIGEGYHVRAGEGHAEVNAL 57

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AG  A+GATAYVTLEPCSH+GR+PPC+  +I+ GIR +V  + DP+  VSGRG + + 
Sbjct: 58  AQAGSAAQGATAYVTLEPCSHFGRTPPCSDTLIKAGIRTLVCAMQDPNPEVSGRGFEKMR 117

Query: 121 QKGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI  +  ++ESE K     ++ R      ++ +KIA S D    MA   S  ITG  +
Sbjct: 118 AAGIEIISGVLESEAKKLNPGFIKRMSGGLPYVRVKIASSLDGRTAMASGESQWITGGNA 177

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-----------EHSPMRIILDPHF 228
           +  V  LRA+S AI+ GI ++LADD  LT R + L            E  P+R+ILD H 
Sbjct: 178 RADVQRLRARSSAIISGIDSILADDSSLTVREDELALADAELAKRAIEKQPLRVILDSHG 237

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           ++  D K++  +    V +      P    +    +         +L++LL  L  R   
Sbjct: 238 RIRPDHKVVNQSGQTLVCVRHGVQLPNFVESLALNHGE----SGLNLRELLKALADRQCN 293

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR---DY 345
            +LVE G+ +A  FI   LVD ++ Y +  ++G    P    +     + + V+     +
Sbjct: 294 EVLVETGSTLAGQFIQQGLVDEVVHYMAPCLMGSEARPVFAMDIETMADKIPVQISDVRH 353

Query: 346 FGSDVCLEY 354
           FG+D+   Y
Sbjct: 354 FGNDIRFTY 362


>gi|115350875|ref|YP_772714.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria AMMD]
 gi|115280863|gb|ABI86380.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Burkholderia
           ambifaria AMMD]
          Length = 373

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 182/368 (49%), Gaps = 25/368 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +   +  T+ NP V C+IVKDG VIG G T   G  HAEVQAL++
Sbjct: 2   FSDTDFAHMQRALTLAARGMYTTAPNPRVGCVIVKDGNVIGEGFTQPAGQDHAEVQALKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G +  G+T YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L
Sbjct: 62  ARARGHDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++ +E       +++R    R  + +K A S D    +    S  ITG  
Sbjct: 122 RDAGIDVRCGLLANEAGELNIGFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H  RA++ AIL GIGTV  D+P LT R        P R+++D    L LD+++++
Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVR-GIDTPRQPQRVLVDSRLDLPLDARLLE 240

Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291
               AP++I     D    V A   + +   I+         DL  +L  L  RGV  L 
Sbjct: 241 G---APLLIFCGRLDAAGEVRAKVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344
           VE G  +  S +  + VD +++Y +  ++G           P+ L+             +
Sbjct: 298 VEAGHKLNGSLLREQCVDELLVYLAPSLLGSDAAGMFDLAAPASLDA---RTRLAFHSVE 354

Query: 345 YFGSDVCL 352
             G D+ +
Sbjct: 355 RIGDDLRI 362


>gi|126440570|ref|YP_001060025.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           668]
 gi|167912128|ref|ZP_02499219.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           112]
 gi|217420854|ref|ZP_03452359.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           576]
 gi|254180983|ref|ZP_04887581.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1655]
 gi|254191828|ref|ZP_04898331.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           Pasteur 52237]
 gi|126220063|gb|ABN83569.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           668]
 gi|157939499|gb|EDO95169.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           Pasteur 52237]
 gi|184211522|gb|EDU08565.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1655]
 gi|217396266|gb|EEC36283.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           576]
          Length = 380

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 116/362 (32%), Positives = 175/362 (48%), Gaps = 13/362 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +   +  T+ NP V C+IVKD +VIG G T   G  HAEVQAL++
Sbjct: 2   FSESDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + R AT YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L
Sbjct: 62  ARARGNDLRDATVYVTLEPCSHFGRTPPCAHTLIDARVGKVVAAMEDPNPQVSGRGLAML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++  E       +++R    R  + +K A S D    +A   S  ITG  
Sbjct: 122 RDAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           +++  H  RA++ AIL GIGTV  DDP+L  R        P R+++D    + L +++++
Sbjct: 182 ARDDGHKWRARACAILTGIGTVREDDPQLNVR-GVDTPRQPRRVLIDSRLDIPLAARLLE 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEG 294
              L       +      A A R +   I+         DL  +L  L  RG+  L VE 
Sbjct: 241 GGSLLVFCGALDAQSEPRADALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           G  +  S +  R VD +++Y +  ++G         +                +  G D+
Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLGADAAAMFDLAAPASLVDRTRLAFHSVERVGDDL 360

Query: 351 CL 352
            +
Sbjct: 361 RI 362


>gi|329298304|ref|ZP_08255640.1| riboflavin biosynthesis protein RibD [Plautia stali symbiont]
          Length = 367

 Score =  332 bits (851), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 123/367 (33%), Positives = 180/367 (49%), Gaps = 18/367 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DA +M+ AL  +R     T+ NP+V C+IV+DG ++G G     G PHAEV AL  AG+ 
Sbjct: 3   DAHYMARALELARRGQYTTTPNPNVGCVIVRDGEIVGEGWHQRAGEPHAEVHALRMAGDH 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI +
Sbjct: 63  ACGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M +E +     +L R       I LK+  S D    MA   S  IT   ++  V  
Sbjct: 123 SHGLMMNEAEALNRGFLKRMRTSFPWIQLKLGASLDGRTAMASGESQWITSAAARRDVQR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
           LRA+S AIL    TVLAD+P LT R N L E             P+R+++D   +++   
Sbjct: 183 LRARSSAILTTSATVLADNPSLTVRWNELSETVRQQLDESQLRQPVRVVIDSQQRVTPQH 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           ++I  A      ++    D     +   +       +  DL  ++ +L  R + S+ VE 
Sbjct: 243 RLI--AQPGETWLMRTEADAQSWPSGVSQIEVPPRGEQLDLVAMMMLLCQRQINSVWVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDV 350
           GA +A + + + LVD +I+Y    ++G           LE                G D+
Sbjct: 301 GAGLAGALLQAGLVDELIVYLVPKLLGNAARGLCALPGLETLADAPALNFSDVRQVGDDL 360

Query: 351 CLEYIGK 357
            L    +
Sbjct: 361 RLILTPR 367


>gi|299135084|ref|ZP_07028275.1| riboflavin biosynthesis protein RibD [Afipia sp. 1NLS2]
 gi|298590061|gb|EFI50265.1| riboflavin biosynthesis protein RibD [Afipia sp. 1NLS2]
          Length = 377

 Score =  332 bits (851), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 150/365 (41%), Positives = 209/365 (57%), Gaps = 11/365 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            +  D RFM  AL   R   G T  NP+V  ++VKDG+++GRG T  GG PHAE  AL+ 
Sbjct: 9   FTPEDHRFMQLALALGRRGQGRTWPNPAVGAVVVKDGVILGRGWTQPGGRPHAEPVALQR 68

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ A+GAT YVTLEPCSH+G+SPPCA  II  GI RV+  ++DP+  V+G+G   L   
Sbjct: 69  AGKAAKGATLYVTLEPCSHHGKSPPCADAIIAAGIARVMSAIEDPNPEVAGQGHARLRDA 128

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   +   E       +  R  E+R H+TLK+AVS D  I  AG   V ITG  +  
Sbjct: 129 GIQVDVGLYRDEAARAHAGHFLRVREQRPHVTLKLAVSADGRIAAAGHKPVQITGEAANA 188

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +VHLLRAQ+DAIL+GIGT +ADDP LTCRL G++  SP+R++LD   +LS +S++I +A 
Sbjct: 189 RVHLLRAQNDAILIGIGTAMADDPMLTCRLPGMEACSPVRVVLDRALRLSGNSRLIHSAR 248

Query: 242 LAPVIIV---TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294
             P+ ++   T        L     ++  +  D      DL+ +L  L  +G+T LLVEG
Sbjct: 249 ATPLWLIASETAEAAAATKLGAAGAHVFHLAVDDHQVGLDLEAVLHTLSAQGITRLLVEG 308

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE---EGYLEKNFMCVRRDYFGSDVC 351
           GA VA SF+ + LVD   L++    IG  G+ +      E  +   ++    + FG D  
Sbjct: 309 GAKVASSFLKAGLVDEFWLFQGMKNIGSDGLAALDGQQLETAIASGWLADETERFGDDRL 368

Query: 352 LEYIG 356
             Y  
Sbjct: 369 TVYRR 373


>gi|53725938|ref|YP_103713.1| riboflavin biosynthesis protein RibD [Burkholderia mallei ATCC
           23344]
 gi|67643977|ref|ZP_00442720.1| riboflavin biosynthesis protein RibD [Burkholderia mallei GB8 horse
           4]
 gi|121598467|ref|YP_992112.1| riboflavin biosynthesis protein RibD [Burkholderia mallei SAVP1]
 gi|124385806|ref|YP_001028557.1| riboflavin biosynthesis protein RibD [Burkholderia mallei NCTC
           10229]
 gi|126449378|ref|YP_001081545.1| riboflavin biosynthesis protein RibD [Burkholderia mallei NCTC
           10247]
 gi|166998345|ref|ZP_02264205.1| riboflavin biosynthesis protein RibD [Burkholderia mallei PRL-20]
 gi|254175573|ref|ZP_04882233.1| riboflavin biosynthesis protein RibD [Burkholderia mallei ATCC
           10399]
 gi|254202412|ref|ZP_04908775.1| riboflavin biosynthesis protein RibD [Burkholderia mallei FMH]
 gi|254207743|ref|ZP_04914093.1| riboflavin biosynthesis protein RibD [Burkholderia mallei JHU]
 gi|254356356|ref|ZP_04972632.1| riboflavin biosynthesis protein RibD [Burkholderia mallei
           2002721280]
 gi|52429361|gb|AAU49954.1| riboflavin biosynthesis protein RibD [Burkholderia mallei ATCC
           23344]
 gi|121227277|gb|ABM49795.1| riboflavin biosynthesis protein RibD [Burkholderia mallei SAVP1]
 gi|124293826|gb|ABN03095.1| riboflavin biosynthesis protein RibD [Burkholderia mallei NCTC
           10229]
 gi|126242248|gb|ABO05341.1| riboflavin biosynthesis protein RibD [Burkholderia mallei NCTC
           10247]
 gi|147746659|gb|EDK53736.1| riboflavin biosynthesis protein RibD [Burkholderia mallei FMH]
 gi|147751637|gb|EDK58704.1| riboflavin biosynthesis protein RibD [Burkholderia mallei JHU]
 gi|148025353|gb|EDK83507.1| riboflavin biosynthesis protein RibD [Burkholderia mallei
           2002721280]
 gi|160696617|gb|EDP86587.1| riboflavin biosynthesis protein RibD [Burkholderia mallei ATCC
           10399]
 gi|238525453|gb|EEP88881.1| riboflavin biosynthesis protein RibD [Burkholderia mallei GB8 horse
           4]
 gi|243065414|gb|EES47600.1| riboflavin biosynthesis protein RibD [Burkholderia mallei PRL-20]
          Length = 380

 Score =  332 bits (851), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 116/362 (32%), Positives = 175/362 (48%), Gaps = 13/362 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +   +  T+ NP V C+IVKD +VIG G T   G  HAEVQAL++
Sbjct: 2   FSESDFTHMQRALALAARGMYTTAPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + R AT YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L
Sbjct: 62  ARARGNDLRDATVYVTLEPCSHFGRTPPCAHTLIDARVGKVVAAMEDPNPQVSGRGLAML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++  E       +++R    R  + +K A S D    +A   S  ITG  
Sbjct: 122 RDAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           +++  H  RA++ AIL GIGTV  DDP+L  R        P R+++D    + L +++++
Sbjct: 182 ARDDGHKWRARACAILTGIGTVREDDPQLNVR-GVDTPRQPRRVLIDSRLDIPLAARLLE 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEG 294
              L       +      A A R +   I+         DL  +L  L  RG+  L VE 
Sbjct: 241 GGSLLVFCGALDAQSEPRADALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           G  +  S +  R VD +++Y +  ++G         +                +  G D+
Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLGADAAAMFDLAAPASLVDRTRLAFHSVERVGDDL 360

Query: 351 CL 352
            +
Sbjct: 361 RI 362


>gi|29840652|ref|NP_829758.1| riboflavin biosynthesis protein RibD [Chlamydophila caviae GPIC]
 gi|29835002|gb|AAP05636.1| riboflavin biosynthesis protein RibD [Chlamydophila caviae GPIC]
          Length = 368

 Score =  332 bits (851), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 102/351 (29%), Positives = 169/351 (48%), Gaps = 8/351 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S     FM  A+            NP V C+IVK+G +IG G     G  HAE  A+  
Sbjct: 4   FSEQQLFFMRRAIELGEKGRFSAPPNPWVGCVIVKNGQIIGEGYHEKRGQLHAEENAINS 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                 G+  YVTLEPC HYG +PPC   +I+  +  V V + DPD RV+G+G+  L + 
Sbjct: 64  TSVSVEGSEVYVTLEPCCHYGNTPPCVNLLIKHKVSTVYVALLDPDSRVAGKGVASLKEA 123

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI + + + + E +  L +Y+ ++      + +K A + D     +   S  IT   ++ 
Sbjct: 124 GIRVFEGLGKKEAEESLKSYIHQRTYGTPWVVIKSAATVDGQTADSHGKSQWITCPEARA 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKT 239
            V  LRA S AI+VG  TVL D+P LT R     L  H P+R+++D    +   +KI  +
Sbjct: 184 DVGKLRASSQAIVVGSKTVLQDNPLLTAREPSGELYSHQPLRVVVDSLGNVGPQAKIFHS 243

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGG 295
              + + + T         +     ++I+  + RD    L KL++ L  + +  +LVEGG
Sbjct: 244 HGKS-LYVTTTQCSKDHIKSIEDLGVDILVTEPRDSRVNLHKLMSYLATKQILQVLVEGG 302

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
             +  +F+  RL +++++Y    + G+   P   + GY  ++   +   +F
Sbjct: 303 PVLHTAFLKERLANALVIYLGPKIFGDQRKPLFGDLGYQLQSAQKILPKFF 353


>gi|62185466|ref|YP_220251.1| riboflavin biosynthesis protein RibD [Chlamydophila abortus S26/3]
 gi|62148533|emb|CAH64304.1| riboflavin biosynthesis protein RibD [Chlamydophila abortus S26/3]
          Length = 368

 Score =  332 bits (851), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 104/362 (28%), Positives = 178/362 (49%), Gaps = 11/362 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S     FM  A+         +  NP V C+IVK+G +IG G     G PHAE +A+  
Sbjct: 4   FSEQQLFFMRRAIELGEKGAFSSQPNPWVGCVIVKNGRIIGEGYHEKAGQPHAEEKAIRS 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A E   G+  YVTLEPC HYG +PPC   +I+  +  V + + DPD RVSGRG   L + 
Sbjct: 64  ASESIEGSEVYVTLEPCCHYGNTPPCVNLLIKYKVAAVYIALLDPDSRVSGRGAASLRKA 123

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI + + + + E +  L +Y+ ++   +  + +K A + D  +      S  IT   ++ 
Sbjct: 124 GICVYEGLGKEEAERSLKSYIYQRTHGKPWVVIKSAATVDGQVADRDGQSQWITCPEARA 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKT 239
            V  LRA+S AI+VG  TVL D+P LT R     L    P+R+++D    +  ++K+  +
Sbjct: 184 DVGKLRARSQAIIVGSKTVLQDNPLLTARQPSGELYPCQPLRVVVDSKGVVPPEAKVFHS 243

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGG 295
           A  + + + T               ++++  +      +L +L+  L       +LVEGG
Sbjct: 244 AGKS-LYVTTPQSSEDHRKKIEDLGVDLLVTEPQGAKVNLHELMAYLSTTPTLQVLVEGG 302

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG---YLEKNFMCVRRDYFGSDVCL 352
           AA+  +F+  RLV +++LY    ++G+   P+  + G   +  +  + +  +  G+ +  
Sbjct: 303 AALHTAFLKERLVHALVLYLGPKILGDQRNPTFGDLGLRLHSSQKIVPIFSEIIGNSLKT 362

Query: 353 EY 354
            +
Sbjct: 363 SW 364


>gi|312880086|ref|ZP_07739886.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           ;5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Aminomonas paucivorans DSM 12260]
 gi|310783377|gb|EFQ23775.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           ;5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Aminomonas paucivorans DSM 12260]
          Length = 378

 Score =  332 bits (851), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 129/359 (35%), Positives = 187/359 (52%), Gaps = 15/359 (4%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             FM  AL  +    G  S NP V C++V++G V+G G     G PHAEV+AL  AG  A
Sbjct: 19  QYFMHMALSLALRGTGFVSPNPRVGCVVVREGKVVGWGYHRRYGGPHAEVEALRRAGTLA 78

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
            G+T YV LEPCSH G++PPCA  ++E  + R VV + DP+ RV GRG+  L   GI ++
Sbjct: 79  EGSTVYVNLEPCSHQGKTPPCAPQLVEARVARAVVGMRDPNPRVDGRGIDLLRDAGIEVL 138

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
           + ++  E +     ++ R    R  +TLK A+S D    +    S  ITG +++++ HLL
Sbjct: 139 ESVLPEEARWINRGFIRRMTRGRPWVTLKGALSLDGTTALESGESRWITGPLARDKAHLL 198

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R + DAILVG+GTVL DDPELT R   ++   P R++LD   +    +K++ +       
Sbjct: 199 RGEHDAILVGVGTVLLDDPELTVR--SVEGVCPRRVVLDGALRTPQTAKVLASGGCT--- 253

Query: 247 IVTENDDPVLA-LAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
             TE D P  A     ++   I            L  +L  L   G+ +LLVEGGA VA 
Sbjct: 254 FFTEQDMPQGAGQRLEERGAEICRVPRGPEGGLSLVPVLEHLASAGINTLLVEGGARVAG 313

Query: 301 SFINSRLVDSIILYRSQIVIGEG---GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
           SF+  +LVD + L+ +  ++G G   G    LE      +    R    G D+ LE + 
Sbjct: 314 SFLREKLVDEVSLFLAPKLLGRGLQLGESWGLEHLDQGFDLRSCRIRQAGEDLWLEGVP 372


>gi|146281221|ref|YP_001171374.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri A1501]
 gi|145569426|gb|ABP78532.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri A1501]
          Length = 359

 Score =  331 bits (850), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 120/353 (33%), Positives = 177/353 (50%), Gaps = 17/353 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ +R  +  T  NP V C+IV DG ++G G     G PHAEV AL +AGE ARGA
Sbjct: 1   MARALQLARKGLYSTHPNPRVGCVIVADGELVGEGWHVRAGEPHAEVHALRQAGERARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPCSHYGR+PPCA+ +++ G+ RVV  + DP+ +V+G GL+ L   GI +   +
Sbjct: 61  TAYVTLEPCSHYGRTPPCAEALVKAGVGRVVAAMQDPNPQVAGNGLERLRSAGIEVASGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E E +     ++ R      ++  K+A+S D    MA   S  ITG  ++ +V  LRA+
Sbjct: 121 LEGEARELNAGFIKRMESGLPYVRAKLAMSLDGRTAMASGESQWITGPAARAEVQRLRAR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDSKIIKT 239
           S  +L G  TVL D   LT R   L           +  P+R+++D   ++ LD+   + 
Sbjct: 181 SSVVLTGADTVLMDAARLTVRGAELGLDAETTALALQRPPLRVLVDGRLRVPLDAPFFQ- 239

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
               P ++VT                 ++  +  DL  LL  L  RG   +LVE G  + 
Sbjct: 240 --AGPALVVTVVAGCEETYRRAGHEALVLGQERVDLTSLLRELAARGANEVLVEAGPRLV 297

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSD 349
            +F +  L+D   L+ +   +G    P    PLE     +    V     G D
Sbjct: 298 SAFASLGLIDEYQLFMAAKFLGSSARPLLELPLERMSEARELKIVDIRAVGDD 350


>gi|254718884|ref|ZP_05180695.1| riboflavin biosynthesis protein RibD [Brucella sp. 83/13]
 gi|265983870|ref|ZP_06096605.1| riboflavin biosynthesis protein RibD [Brucella sp. 83/13]
 gi|264662462|gb|EEZ32723.1| riboflavin biosynthesis protein RibD [Brucella sp. 83/13]
          Length = 373

 Score =  331 bits (850), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 168/358 (46%), Positives = 228/358 (63%), Gaps = 7/358 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM A +R++R H GLT TNPSV  +IVKDG+++GRGVTA GG PHAE QAL EAGE 
Sbjct: 15  DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEAGEA 74

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPC+H+GR+PPCA+ ++  G+ RVVV   DPD RVSG+G   L + GI +
Sbjct: 75  ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++  +    L  YL R   K   + LK+A+S D MIG  G G V ITG +S+ Q H+
Sbjct: 135 VPGILSEQAADDLAGYLNRSARKCPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD   +L   SK++++A   P+
Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPPSSKLVRSADTQPL 254

Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
            +    + P     A       I+  +  D    L +LL  L  +G+ S+LVEGGA VA 
Sbjct: 255 WVACGEEAPDERRAALSAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314

Query: 301 SFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           SF++ +LVD +I++RS +VIG   G+     E ++   F  +RR  +  D C EY+  
Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYVRN 372


>gi|78065536|ref|YP_368305.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Burkholderia sp. 383]
 gi|77966281|gb|ABB07661.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Burkholderia sp.
           383]
          Length = 373

 Score =  331 bits (850), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 181/368 (49%), Gaps = 25/368 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +   +  T+ NP V C+IVKDG VIG G T   G  HAEVQAL++
Sbjct: 2   FSDIDFAHMQRALTLAARGMYTTAPNPRVGCVIVKDGEVIGEGFTQPAGQDHAEVQALKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G +  G+T YVTLEPCSH+GR+PPCA  +IE  + +VV  ++DP+ +VSGRGL  L
Sbjct: 62  ARARGYDVAGSTVYVTLEPCSHFGRTPPCANALIEARVAKVVAAMEDPNPQVSGRGLGML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++  E       +++R    R  + +K A S D    +    S  ITG  
Sbjct: 122 RDAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H  RA++ AIL GIGTV  D+P LT R        P RI++D    L LD+++++
Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVR-GIDTPRQPQRILVDSRLDLPLDARLLE 240

Query: 239 TALLAPVIIVT---ENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291
               AP++I     +    + A   + +   I+         DL  +L  L  RGV  L 
Sbjct: 241 G---APLLIFCGRLDAASELRANVLKARGAEIVPIANAQGKVDLPAMLAALGARGVNELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344
           VE G  +  S +  + VD +++Y +  ++G           P+ L+             +
Sbjct: 298 VEAGHKLNGSLLREQCVDELLVYLAPSLLGADAAGMFDLAAPANLDA---RTRLSFHGFE 354

Query: 345 YFGSDVCL 352
             G D+ +
Sbjct: 355 RVGDDLRI 362


>gi|26522770|dbj|BAC44857.1| pyrimidine deaminase/ pyrimidine reductase [Vibrio fischeri]
          Length = 372

 Score =  331 bits (850), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 119/369 (32%), Positives = 188/369 (50%), Gaps = 20/369 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  ++ D   M  A+  ++  +  T+ NP+V C++VKDG ++G G     G PHAEV AL
Sbjct: 1   MTFTTQDHLMMQKAILLAKQGIYTTAPNPNVGCVLVKDGKIVGEGAHLKAGEPHAEVHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AG+EA+GATAYVTLEPCSHYGR+PPCA+ +I+ G+++V+  + DP+ +V+GRGL  L+
Sbjct: 61  RQAGKEAQGATAYVTLEPCSHYGRTPPCAEGLIKAGVKKVICAMVDPNPQVAGRGLAMLN 120

Query: 121 QKGIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI     ++E++ +     +LTR    +  + LK+A S D    +    S  IT   +
Sbjct: 121 EAGIETASGLLEADARALNPHFLTRMETGKPFVQLKMAASLDGKTALKNGVSQWITSKEA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228
           +  V   RAQS AI     TV+ D+  L  R + L               PMR ILD   
Sbjct: 181 RQDVQRYRAQSGAIFSTAKTVIDDNASLNVRWSDLPPSIQESYQQAAIRQPMRFILDRQH 240

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGV 287
            L+ D K+ + +     I  ++N  P++      +    +  D  +LK+++  +     V
Sbjct: 241 ALTSDLKLFQASGEVVTI-SSQNTHPIVTSENHIQCC--VDDDQLNLKEVVNKISRDFNV 297

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRR 343
             + VE GA +A S I   LVD +I+Y +  ++G  G        LE      +      
Sbjct: 298 NHIWVEAGATLAASMIKENLVDELIIYLAPKLMGADGRSIINLIGLETMSETIDLDIKDI 357

Query: 344 DYFGSDVCL 352
              G D+ +
Sbjct: 358 RMVGKDIRI 366


>gi|85715452|ref|ZP_01046433.1| Riboflavin biosynthesis protein RibD [Nitrobacter sp. Nb-311A]
 gi|85697647|gb|EAQ35523.1| Riboflavin biosynthesis protein RibD [Nitrobacter sp. Nb-311A]
          Length = 383

 Score =  331 bits (850), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 149/364 (40%), Positives = 203/364 (55%), Gaps = 12/364 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D  FM  AL   R  +G ++ NP+V  +IVK+G+++GRG T  GG PHAE +AL  AG
Sbjct: 19  AADLHFMQLALALGRRSLGASAPNPAVGAVIVKNGVIVGRGWTQPGGRPHAEAEALRRAG 78

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGAT YVTLEPCSH G++PPCA  +I  GI RVV  ++DP   V+G+G   L   GI
Sbjct: 79  EAARGATLYVTLEPCSHVGKTPPCADAVIAAGITRVVSAIEDPTPEVAGKGHARLRAAGI 138

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   +   E       +L R  + R HI LK+A+S D MI  AG   V ITG  +K +V
Sbjct: 139 SVEVGLCADEAAHHHAGHLRRVRDGRPHIILKLAMSSDGMIAAAGGIPVAITGEAAKARV 198

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           HLLRAQ  AILVGIGTVLADDP LTCRL G++  SP R++LD   ++   S+++++A   
Sbjct: 199 HLLRAQCSAILVGIGTVLADDPMLTCRLPGMETRSPPRVVLDHALRIPESSRLVQSAHET 258

Query: 244 PVIIVTEN-DDPVLALAFRKKNINII------YCDCRDLKKLLTILVGRGVTSLLVEGGA 296
           P+ I+T    +   A+      + ++           DL ++L  L  RGVT L+VEGGA
Sbjct: 259 PLWIMTSEFAEASRAMKLGAAGVQVMRVPVAAEAPGLDLLEVLRALSERGVTRLIVEGGA 318

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
            +A SF+ + LVD   L      IG+ G+ +    PL        F     +    D   
Sbjct: 319 RIAASFVAAALVDEAWLLSGPDPIGDDGVAALGALPLTAITGSPRFRMRACETLDQDALA 378

Query: 353 EYIG 356
            Y  
Sbjct: 379 IYER 382


>gi|167895478|ref|ZP_02482880.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           7894]
 gi|167920101|ref|ZP_02507192.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           BCC215]
 gi|237813427|ref|YP_002897878.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           MSHR346]
 gi|237504754|gb|ACQ97072.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           MSHR346]
          Length = 378

 Score =  331 bits (850), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 116/362 (32%), Positives = 175/362 (48%), Gaps = 13/362 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +   +  T+ NP V C+IVKD +VIG G T   G  HAEVQAL++
Sbjct: 2   FSESDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + R AT YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L
Sbjct: 62  ARARGNDLRDATVYVTLEPCSHFGRTPPCAHTLIDARVGKVVAAMEDPNPQVSGRGLAML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++  E       +++R    R  + +K A S D    +A   S  ITG  
Sbjct: 122 RDAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           +++  H  RA++ AIL GIGTV  DDP+L  R        P R+++D    + L +++++
Sbjct: 182 ARDDGHKWRARACAILTGIGTVREDDPQLNVR-GVDTPRQPRRVLIDSRLDIPLAARLLE 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEG 294
              L       +      A A R +   I+         DL  +L  L  RG+  L VE 
Sbjct: 241 GGSLLVFCGALDAQSEPRADALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           G  +  S +  R VD +++Y +  ++G         +                +  G D+
Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLGADAAAMFDLAAPASLVDRTRLAFHSVERVGDDL 360

Query: 351 CL 352
            +
Sbjct: 361 RI 362


>gi|190572771|ref|YP_001970616.1| putative deaminase [Stenotrophomonas maltophilia K279a]
 gi|190010693|emb|CAQ44302.1| putative deaminase [Stenotrophomonas maltophilia K279a]
          Length = 361

 Score =  331 bits (850), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 122/356 (34%), Positives = 178/356 (50%), Gaps = 7/356 (1%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             S  D   M+ ALR +      T  NP V C+I     V+G+G     G PHAEV AL 
Sbjct: 4   SFSVLDHLHMANALRLAERAAYTTRPNPMVGCVIAHGERVVGQGWHQRAGGPHAEVFALR 63

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           EAG EARGATAYVTLEPC+HYGR+PPCA  +IE G+ RVV  + DP  +V G G   L  
Sbjct: 64  EAGSEARGATAYVTLEPCAHYGRTPPCALALIEAGVSRVVAAMRDPFPKVDGGGFDLLRN 123

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI + + +M ++ +     +L+R    R  + +K+A S D    MA   S  ITG  ++
Sbjct: 124 AGIEVAEGLMAAQARELNKGFLSRVERNRPWLRVKLAASLDGRTAMADGSSKWITGPAAR 183

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             V   RA++ AIL G  TVLADDP LT RL   +   P+R++LD   +     ++    
Sbjct: 184 EDVQHWRARAGAILTGADTVLADDPMLTVRLADTEVMPPLRVVLDSRLRSLECGRV--RE 241

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
             AP + + +        A  +           DL  +L +L  RG+  +  E GA +A 
Sbjct: 242 GGAPTLYMHDAAVSAPDAADAEFASVPSAEGRLDLGAVLALLAERGINEVHTEAGATLAG 301

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVCL 352
           + +    +D ++LY++  ++G+ G P     G      ++    V +   G D+ L
Sbjct: 302 ALLRGGWMDELLLYQAPTLLGDNGRPLLAGLGINAMDQQRRLRVVDQRQVGEDIRL 357


>gi|290474698|ref|YP_003467578.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Xenorhabdus bovienii SS-2004]
 gi|289174011|emb|CBJ80798.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Xenorhabdus bovienii SS-2004]
          Length = 369

 Score =  331 bits (850), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 120/368 (32%), Positives = 175/368 (47%), Gaps = 18/368 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D ++MS AL  +      TS NP+V C+IV+   ++G G     G PHAEV AL  AG
Sbjct: 2   TLDEKYMSRALELANQGRFTTSPNPNVGCVIVQGDHIVGEGFHVCAGEPHAEVHALRMAG 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            +A+GATAYVTLEPCSH+G++PPCA  +I  GI RVV  + DP+ +V+GRGL  L Q GI
Sbjct: 62  GKAKGATAYVTLEPCSHHGKTPPCADALIAAGISRVVAAMQDPNPQVAGRGLYKLQQAGI 121

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++ +E +     +L R      ++ LK+  S D    +A   S  IT   ++  V
Sbjct: 122 AVEHGVLMAEAEALNKGFLKRMRTGFPYLQLKMGASLDGRTALASGESKWITSPEARQDV 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSL 232
              RAQ  AIL    TVLADDP LT R + L               P+RII+D   +++ 
Sbjct: 182 QQFRAQCSAILSSSATVLADDPSLTVRWHELDAEIQAIYPQEQVRQPIRIIVDSQNRVTP 241

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
             +      +    +   + D           +   +    DL  L+  L  R + S+  
Sbjct: 242 QHQ--VVQQVGQCWLARTHTDQQQWPDNVDHIVLPAHGGGVDLVLLMMQLGKRQINSVWA 299

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGS 348
           E G  +A + ++  LVD +ILY +  V+G           L++      F        GS
Sbjct: 300 ECGPVLAGALLSLGLVDELILYIAPKVLGNTARGLFAIPELQKLSDAPEFTLFDVRQIGS 359

Query: 349 DVCLEYIG 356
           DV L    
Sbjct: 360 DVRLRLRP 367


>gi|269469107|gb|EEZ80655.1| pyrimidine deaminase [uncultured SUP05 cluster bacterium]
          Length = 350

 Score =  331 bits (849), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 105/325 (32%), Positives = 171/325 (52%), Gaps = 17/325 (5%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             S  D+ +M+ AL+ +         NP V C+IVKD  +I +G     G  H E+ AL+
Sbjct: 4   TFSKNDSHYMAIALKLANEGRYGVGANPMVGCVIVKDDQIIAKGYHQTFGEAHGEINALK 63

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +   +A GAT YVTLEPCSH G++PPCAQ II+ G ++V++ + DP+  VSG+G+  L  
Sbjct: 64  QIDHQAHGATFYVTLEPCSHQGKTPPCAQAIIDSGAKKVIIALLDPNPLVSGKGMAMLEN 123

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI ++  +ME++       ++ R       +T KIA+S D    M    S  ITG  ++
Sbjct: 124 SGIEVITGLMENKALELNRGFVKRMQTGLPFVTCKIAMSLDGKTSMTSGESKWITGEPAR 183

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS-KIIKT 239
             V  LRA   AI+ G GT++ D+P +T RLN +   SP+R+++D   ++   +  I   
Sbjct: 184 QDVQKLRANHQAIITGSGTIITDNPSMTVRLNNINS-SPLRVVIDSKNQIQDTALNIFSN 242

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
              AP +I+  N            N+ ++     DL   L  L  +G+ + L+E G  + 
Sbjct: 243 D--APTLILNTN------------NVQVLESGKLDLNDALKHLGDQGINNALLEAGPGLI 288

Query: 300 HSFINSRLVDSIILYRSQIVIGEGG 324
            + + ++L+D  I+Y + I++G   
Sbjct: 289 GAMLEAKLIDEFIIYTAPILMGSEA 313


>gi|53720234|ref|YP_109220.1| multifunctional riboflavin biosynthetic protein [deaminase,
           reductase [Burkholderia pseudomallei K96243]
 gi|76810186|ref|YP_334473.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1710b]
 gi|126453712|ref|YP_001067304.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1106a]
 gi|134280288|ref|ZP_01766999.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           305]
 gi|167720794|ref|ZP_02404030.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           DM98]
 gi|167739778|ref|ZP_02412552.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 14]
 gi|167825410|ref|ZP_02456881.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 9]
 gi|167846901|ref|ZP_02472409.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           B7210]
 gi|167903861|ref|ZP_02491066.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           NCTC 13177]
 gi|226193754|ref|ZP_03789356.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           Pakistan 9]
 gi|242314762|ref|ZP_04813778.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1106b]
 gi|254196130|ref|ZP_04902555.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           S13]
 gi|254259958|ref|ZP_04951012.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1710a]
 gi|254298894|ref|ZP_04966344.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           406e]
 gi|52210648|emb|CAH36632.1| multifunctional riboflavin biosynthetic protein [deaminase,
           reductase [Burkholderia pseudomallei K96243]
 gi|76579639|gb|ABA49114.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1710b]
 gi|126227354|gb|ABN90894.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1106a]
 gi|134248295|gb|EBA48378.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           305]
 gi|157808908|gb|EDO86078.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           406e]
 gi|169652874|gb|EDS85567.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           S13]
 gi|225934059|gb|EEH30044.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           Pakistan 9]
 gi|242138001|gb|EES24403.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1106b]
 gi|254218647|gb|EET08031.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1710a]
          Length = 378

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 116/362 (32%), Positives = 175/362 (48%), Gaps = 13/362 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +   +  T+ NP V C+IVKD +VIG G T   G  HAEVQAL++
Sbjct: 2   FSESDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + R AT YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L
Sbjct: 62  ARARGNDLRDATVYVTLEPCSHFGRTPPCAHTLIDARVGKVVAAMEDPNPQVSGRGLAML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++  E       +++R    R  + +K A S D    +A   S  ITG  
Sbjct: 122 RDAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           +++  H  RA++ AIL GIGTV  DDP+L  R        P R+++D    + L +++++
Sbjct: 182 ARDDGHKWRARACAILTGIGTVREDDPQLNVR-GVDTPRQPRRVLIDSRLDIPLAARLLE 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEG 294
              L       +      A A R +   I+         DL  +L  L  RG+  L VE 
Sbjct: 241 GGSLLVFCGALDAQSEPRADALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350
           G  +  S +  R VD +++Y +  ++G         +                +  G D+
Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLGADAAAMFDLAAPASLVDRTRLAFHSVERVGDDL 360

Query: 351 CL 352
            +
Sbjct: 361 RI 362


>gi|260425443|ref|ZP_05779423.1| riboflavin biosynthesis protein RibD [Citreicella sp. SE45]
 gi|260423383|gb|EEX16633.1| riboflavin biosynthesis protein RibD [Citreicella sp. SE45]
          Length = 363

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 136/362 (37%), Positives = 197/362 (54%), Gaps = 11/362 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D R M+ ALR  R  +G    NP+V C+IVKDG VIGRG TA GG PHAE QAL +AG
Sbjct: 2   TQDIRHMAHALRLGRRRMGQCWPNPAVGCVIVKDGRVIGRGATAPGGRPHAEPQALAQAG 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
             ARGAT YVTLEPC+H+G++PPCA+ +++ G+ RVV  + D D RVSG+G + L + GI
Sbjct: 62  VAARGATVYVTLEPCAHHGKTPPCAEALVKAGVARVVAPLADSDPRVSGKGFEHLRRHGI 121

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++  E       +  +  E R  +TLK+A S D  I  A   S  ITG  ++  V
Sbjct: 122 EVTTGVLAEEAARDHAGFFLKVGEGRPLVTLKLANSFDGRIATATGESQWITGPEARRVV 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H LRA  DA++VG GT  +DDP LT R  G +   P+R+++     + L SK+  TA   
Sbjct: 182 HGLRAAHDAVMVGAGTARSDDPALTVRGWG-EVRQPVRVVVSRLIDVPLMSKLASTARQV 240

Query: 244 PVIIVTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298
           PV +   +D  P    A++     +I C+ R    D   LL  L  +G+T +  EGG  +
Sbjct: 241 PVWLAHGSDAAPATRKAWQSCGAKLIPCEIRAGRVDPHGLLRELGEQGLTRVFCEGGGQL 300

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           A S +++ LVD ++ + + + +G  G P      ++       F+       G DV   +
Sbjct: 301 AASLLSADLVDELVGFTAGLALGAEGRPGIGAMGVDRLSEAPRFVLDEVRAVGPDVMHRW 360

Query: 355 IG 356
             
Sbjct: 361 RR 362


>gi|269837993|ref|YP_003320221.1| riboflavin biosynthesis protein RibD [Sphaerobacter thermophilus
           DSM 20745]
 gi|269787256|gb|ACZ39399.1| riboflavin biosynthesis protein RibD [Sphaerobacter thermophilus
           DSM 20745]
          Length = 387

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 120/367 (32%), Positives = 183/367 (49%), Gaps = 16/367 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           V + D  +M  AL  +    G  + NP+V  ++V+DG ++G G T      HAE+ AL +
Sbjct: 9   VPATDLHWMRRALDLAASARGRVAPNPAVGAVLVRDGRLVGEGATEPPPGAHAEIVALRQ 68

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  ARGAT YVTLEPC+HYGR+PPC   +I  GI R VV + DP   V+GRGL+ L++ 
Sbjct: 69  AGALARGATLYVTLEPCAHYGRTPPCVDALIAAGIARAVVALRDPYPAVNGRGLRLLAEA 128

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +   +           +L R       +T K AVS D  I      +  ITG  ++ 
Sbjct: 129 GVRVELGLAAGAAAAINAGFLKRVHCGLPEVTAKFAVSLDGKIATHTGHARWITGAEARR 188

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN-----GLQEHSPMRIILDPHFKLSLDSKI 236
           + H LR   DAI+VGIGT+LADDP LT RL          H P+R+++D   +    + +
Sbjct: 189 EGHRLRDTHDAIMVGIGTLLADDPLLTTRLPPEDCGAGGPHHPLRVVVDSQARTPPGAAM 248

Query: 237 IKTALLAPVIIVTENDD-PVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291
           ++  +    ++ T +   P    A R    +++         DL  LL  L  RGV S+L
Sbjct: 249 LQPHMPGRTLLATTSSAPPERIAALRAVGADVVTLPDHGGRVDLHALLRCLAARGVNSVL 308

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYF 346
           VEGG  +  +  ++ L+D  + + + +++G    P PL    +           V     
Sbjct: 309 VEGGGTLLGALFDAGLIDRAVAFIAPVMVGGRDAPGPLGGEGVATMDAACRLREVEVCQV 368

Query: 347 GSDVCLE 353
           GSD+ ++
Sbjct: 369 GSDLMVQ 375


>gi|254242738|ref|ZP_04936060.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
           2192]
 gi|126196116|gb|EAZ60179.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
           2192]
          Length = 373

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 123/365 (33%), Positives = 179/365 (49%), Gaps = 22/365 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ D  +M+ AL  +R  +  T  NP V C++VKDG V+G G     G PHAEV AL +
Sbjct: 1   MNAADPLYMARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q 
Sbjct: 61  AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E+E +     ++ R       + +K+A+S D    MA   S  ITG  +++
Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARS 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRA+S  +L G  T+LADD  L  R + L               +R+++D   ++ 
Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQSLRVLVDGRLRVP 240

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGV 287
           L+S   +     P ++ T          F+     ++         DL KLL  L  RG 
Sbjct: 241 LESAFYQ---AGPALVATCAAASARER-FQDAGHELLALPSAEGHVDLHKLLLELAARGA 296

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRD 344
             +LVE G  +A +F    LVD   L+ +   +G    P    PL               
Sbjct: 297 NEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAQLRIDDIR 356

Query: 345 YFGSD 349
             G D
Sbjct: 357 AVGDD 361


>gi|90415720|ref|ZP_01223654.1| riboflavin biosynthesis protein [marine gamma proteobacterium
           HTCC2207]
 gi|90333043|gb|EAS48213.1| riboflavin biosynthesis protein [marine gamma proteobacterium
           HTCC2207]
          Length = 373

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 115/371 (30%), Positives = 179/371 (48%), Gaps = 15/371 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S  D  +MS AL  +      TS NPSV C++V DG ++G G T   G  HAEV+AL
Sbjct: 1   MAYSVDDREYMSRALELAAKGRFTTSPNPSVGCVLVVDGAIVGEGHTRPAGGNHAEVEAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                 A+GATAYVTLEPCSH G++ PC + +I+ GI RVV+  +DP+ +V+G G++ L 
Sbjct: 61  NA-AASAKGATAYVTLEPCSHSGKTGPCVEVLIDAGISRVVIACEDPNPKVAGEGIKLLQ 119

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI +   + E + +     ++ R  +    + +K+A S D    MA   S  IT   S
Sbjct: 120 DAGIEVACGLYEDQARELNKGFIKRHEQGLPWVVVKMAASLDGRTAMASGQSQWITTPAS 179

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ------EHSPMRIILDPHFKLSLD 233
           +  V  LRA + AI+ GIGT L DDP LT R+             P+R+++D   ++S +
Sbjct: 180 RKDVQRLRAANCAIITGIGTQLMDDPSLTVRITNDDLGVTDSLRQPLRVVVDSKLQMSPE 239

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTS 289
           +++        +  +   +    AL        +++   R    DL +LL  L  R   S
Sbjct: 240 ARMFAQPGDTLIATMDGPEQRERALPLEAAGAAVVFLPARDGHVDLHELLLELARRECNS 299

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYF 346
           ++VE GA +A  F+   L+D ++ Y +  + G    P    P++                
Sbjct: 300 VMVEAGAGLAGGFVAEGLLDELVCYWAPKLFGSDARPMFELPIQTIDAHLALAVKDMRQI 359

Query: 347 GSDVCLEYIGK 357
           G D+ +     
Sbjct: 360 GEDIRITLRPD 370


>gi|170732274|ref|YP_001764221.1| riboflavin biosynthesis protein RibD [Burkholderia cenocepacia
           MC0-3]
 gi|169815516|gb|ACA90099.1| riboflavin biosynthesis protein RibD [Burkholderia cenocepacia
           MC0-3]
          Length = 373

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 123/368 (33%), Positives = 180/368 (48%), Gaps = 25/368 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +   +  T+ NP V C+IVKDG VIG G T   G  HAEVQAL++
Sbjct: 2   FSDTDFAHMQRALALAARGMYTTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G +  G+T YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L
Sbjct: 62  ARSRGYDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++  E       +++R    R  + +K A S D    +    S  ITG  
Sbjct: 122 RDAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H  RA++ AIL GIGTV  D+P LT R        P RI++D    L LD+++++
Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVR-GIDTPRQPQRILVDSRLDLPLDARLLE 240

Query: 239 TALLAPVIIVTENDDPV---LALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291
               AP++I     D      A   + +   I+         DL  +L  L  RGV  L 
Sbjct: 241 G---APLLIFCGRLDAAGELRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344
           VE G  +  S +  R VD +++Y +  ++G           P+ LE             +
Sbjct: 298 VEAGHKLNGSLLRERCVDELLVYLAPSLLGADAAGMFDLAAPASLEA---RTRLSFHGIE 354

Query: 345 YFGSDVCL 352
             G D+ +
Sbjct: 355 RIGDDLRI 362


>gi|172059887|ref|YP_001807539.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria
           MC40-6]
 gi|171992404|gb|ACB63323.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria
           MC40-6]
          Length = 373

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 182/368 (49%), Gaps = 25/368 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +   +  T+ NP V C+IVKDG VIG G T   G  HAEVQAL++
Sbjct: 2   FSDTDFAHMQRALTLAARGMYTTAPNPRVGCVIVKDGNVIGEGFTQPAGQDHAEVQALKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G +  G+T YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L
Sbjct: 62  ARARGHDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++ +E       +++R    R  + +K A S D    +    S  ITG  
Sbjct: 122 RDSGIDVRCGLLANEAGELNIGFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H  RA++ AIL GIGTV  D+P LT R        P R+++D    L LD+++++
Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVR-GIDTPRQPQRVLVDSRLDLPLDARLLE 240

Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291
               AP++I     D    V A   + +   I+         DL  +L  L  RGV  L 
Sbjct: 241 G---APLLIFCGRLDAAGEVRAKVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344
           VE G  +  S +  + VD +++Y +  ++G           P+ L+             +
Sbjct: 298 VEAGHKLNGSLLREQCVDELLVYLAPSLLGSDAAGMFDLAAPASLDA---RTRLAFHSVE 354

Query: 345 YFGSDVCL 352
             G D+ +
Sbjct: 355 RIGDDLRI 362


>gi|84502762|ref|ZP_01000881.1| riboflavin biosynthesis protein RibD [Oceanicola batsensis
           HTCC2597]
 gi|84389157|gb|EAQ01955.1| riboflavin biosynthesis protein RibD [Oceanicola batsensis
           HTCC2597]
          Length = 367

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 140/363 (38%), Positives = 194/363 (53%), Gaps = 11/363 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D RF+S AL   R  +G T  NPSV C+IV+DG ++GRG TA GG PHAE QAL +A
Sbjct: 3   AAADRRFLSLALALGRRGLGRTWPNPSVGCVIVRDGRIVGRGWTAPGGRPHAEPQALAQA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGATAYV+LEPC+H+G++PPC + +I  GI RVV  + D D RV+G+G + L   G
Sbjct: 63  GEAARGATAYVSLEPCAHHGKTPPCTEALIAAGIARVVAPLADTDPRVAGQGFERLRWAG 122

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +   ++  E       +  R    R  +TLK+A S D  I  A   S  ITG  ++  
Sbjct: 123 IEVSTGLLGEEAARDHAGFFLRNELGRPLVTLKLASSFDGRIATATGDSRWITGAEARRA 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH +R + DA++VG GT  ADDP LT R  G     P+RI++     L L S++ +TA  
Sbjct: 183 VHAMRMRHDAVMVGAGTARADDPSLTVRDMGAT-RQPVRIVVSRRLDLPLMSRLARTAKE 241

Query: 243 APVIIVTEND-DPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAA 297
            PV +    D DP L   +      +  CD      D + +L  L   G+T +  EGG A
Sbjct: 242 VPVWLCHGPDADPALHRTWADLGARLFACDVAGGHLDPRSVLGALGEAGLTRVFCEGGGA 301

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLE 353
           +A S +N+ LVD++I   + + IG  G P+     L        F        G DV   
Sbjct: 302 LAASLLNADLVDTLIGMTAGVAIGAEGQPALGALGLARLAEAPRFDLAEARPLGGDVMHV 361

Query: 354 YIG 356
           +  
Sbjct: 362 WER 364


>gi|148255996|ref|YP_001240581.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Bradyrhizobium sp. BTAi1]
 gi|146408169|gb|ABQ36675.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bradyrhizobium
           sp. BTAi1]
          Length = 383

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 144/366 (39%), Positives = 205/366 (56%), Gaps = 12/366 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
               D RFM  AL   R   G T  NP+V  ++VKDG+++GRG T  GG PHAE +AL  
Sbjct: 17  QKDADRRFMQLALALGRRGQGRTWPNPAVGAVVVKDGVIVGRGWTQPGGRPHAEPEALRR 76

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG   +GAT YV+LEPCSH+G+SPPCA  +I  GI RVV  ++DP+  VSG+G   L   
Sbjct: 77  AGAATKGATLYVSLEPCSHFGKSPPCADAVIAAGISRVVSAIEDPNPEVSGQGHARLRAA 136

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   +  ++ K     +  R  + R H+ LK+AVS D+ I  AG   V ITG  ++ 
Sbjct: 137 GIQVEVGLCSADAKRDHAGFFRRIRDSRPHVILKLAVSADDKIAAAGNKPVAITGEAART 196

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +VHLLRAQSDAIL+G+ T +ADDP LTCRL G++  SP+R++LDP  +L + S+++++A 
Sbjct: 197 RVHLLRAQSDAILIGVRTAIADDPLLTCRLPGMEARSPVRVVLDPMLRLPMTSRLVQSAR 256

Query: 242 LAPVI-IVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEG 294
             P+  I +   +P  A         +I    +      +   +L  L  +G+T L++EG
Sbjct: 257 TTPLWMIASAVAEPAAATKLGAAGAQVIRVPPQVEPSVLEPPAVLKALADKGITRLMIEG 316

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
           G+ VA SF+ S LVD I L R    IG  GI +    PL        +     +   +D+
Sbjct: 317 GSRVASSFMQSGLVDEIWLLRGAGEIGADGIAALDALPLTAITQSPAYRVRASETLDTDI 376

Query: 351 CLEYIG 356
              Y  
Sbjct: 377 LTIYER 382


>gi|293610032|ref|ZP_06692333.1| hypothetical protein HMPREF0013_02182 [Acinetobacter sp. SH024]
 gi|292827264|gb|EFF85628.1| hypothetical protein HMPREF0013_02182 [Acinetobacter sp. SH024]
          Length = 361

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 121/365 (33%), Positives = 186/365 (50%), Gaps = 18/365 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M     D  +M  A+  ++  +  T  NP+V C+IVKD  +IG+G     G PHAEV AL
Sbjct: 1   MSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGQGFHPKAGQPHAEVFAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAGE A+GATAYVTLEPC+HYGR+PPCA+ +++  +++VVV   DP+  V+G+G+Q L 
Sbjct: 61  REAGEHAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILE 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI +   + E         +L        ++ LK+A S D    MA   S  ITG  +
Sbjct: 121 NAGIEVEVGICEDLASKLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSK 235
           +  V   RA S A++ GI TV+ADD +L  R     +      P R++LD   +L L++K
Sbjct: 181 RQDVQHWRAISGAVITGIETVIADDCQLNVRSLNNFDIETVAQPKRVVLDRQGRLPLNAK 240

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVEG 294
           I++       ++V       LA      ++ +I  + + LK LL  L     +  +LVE 
Sbjct: 241 ILEN---PETVMVMGPYRQELA------DLGVIQLEIQPLKMLLQTLSKQHQIYDVLVEA 291

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351
           GA ++ +F+   LVD +I Y +  ++G+       +  E    +  F  +       D+ 
Sbjct: 292 GATLSTAFLQEGLVDELISYIASTLLGKSARAMFNAEFEYMAEQLRFTLLDVTQIDQDIR 351

Query: 352 LEYIG 356
           L  I 
Sbjct: 352 LRLIP 356


>gi|206561395|ref|YP_002232160.1| multifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Burkholderia cenocepacia J2315]
 gi|198037437|emb|CAR53372.1| multifunctional riboflavin biosynthetic protein [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase]
           [Burkholderia cenocepacia J2315]
          Length = 373

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 123/368 (33%), Positives = 181/368 (49%), Gaps = 25/368 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +   +  T+ NP V C+IVKDG VIG G T   G  HAEVQAL++
Sbjct: 2   FSDTDFAHMQRALALAARGMYTTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G +  G+T YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L
Sbjct: 62  ARSRGYDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++  E       +++R    R  + +K A S D    +    S  ITG  
Sbjct: 122 RDAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H  RA++ AIL GIGTV  D+P LT R        P RI++D    L LD+++++
Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVR-GIDTPRQPQRILVDSRLDLPLDARLLE 240

Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291
               AP++I     D    V A   + +   I+         DL  +L  L  RGV  L 
Sbjct: 241 G---APLLIFCGRLDAAGEVRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344
           VE G  +  S +  R VD +++Y +  ++G           P+ L+             +
Sbjct: 298 VEAGHKLNGSLLRERCVDELLVYLAPSLLGADAAGMFDLAAPASLDA---RTRLSFHGIE 354

Query: 345 YFGSDVCL 352
             G D+ +
Sbjct: 355 RIGDDLRI 362


>gi|157374412|ref|YP_001473012.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella
           sediminis HAW-EB3]
 gi|157316786|gb|ABV35884.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella
           sediminis HAW-EB3]
          Length = 374

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 124/370 (33%), Positives = 187/370 (50%), Gaps = 23/370 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   MS A++ +R  +  T  NP V  ++ K G VIG G     G PHAEV AL  
Sbjct: 2   WSVEDIEMMSRAIKLARKGLYTTRPNPCVGSVVTKAGQVIGEGFHIRAGGPHAEVYALAM 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A + A+GATAYVTLEPCSH+GR+PPCA+ +I+ G+ RVVV ++DP+ +VSGRG++ L+  
Sbjct: 62  ASDNAKGATAYVTLEPCSHHGRTPPCAEALIKAGVARVVVAIEDPNPQVSGRGIKMLTDA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++  E       ++ R       IT+K+A S D    +    S  ITG  ++ 
Sbjct: 122 GIQVDVGLLNVEAGDINPGFMKRMQSGLPKITVKLASSLDGKTALNNGVSKWITGSEARR 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRA+  A++ GI TVL DDP L  R + L          + H P+R+ILD   +L+
Sbjct: 182 DVQRLRARHCALVTGIETVLIDDPSLNVRHSELGVLANELAPSEIHQPLRVILDSRARLT 241

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRG 286
              K+      +P+++V+  D P+       ++++ +     D     L  L   L    
Sbjct: 242 KGFKLFSVN--SPILLVSCTDYPLEEQTAWPEHVSHLKLPADDCGRVVLSLLFKHLGQ-S 298

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLE-KNFMCVR 342
             S+L+E GA +A S I     D ++LY++  ++G  G   I  P  E   +      + 
Sbjct: 299 CNSVLIEAGATLAGSVIEQGHGDELVLYQAMKILGSAGRNLISLPGYEAMADIPAVELID 358

Query: 343 RDYFGSDVCL 352
               G D  L
Sbjct: 359 ERKLGKDTRL 368


>gi|107022039|ref|YP_620366.1| riboflavin biosynthesis protein RibD [Burkholderia cenocepacia AU
           1054]
 gi|116688983|ref|YP_834606.1| riboflavin biosynthesis protein RibD [Burkholderia cenocepacia
           HI2424]
 gi|105892228|gb|ABF75393.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Burkholderia
           cenocepacia AU 1054]
 gi|116647072|gb|ABK07713.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Burkholderia cenocepacia HI2424]
          Length = 373

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 123/368 (33%), Positives = 180/368 (48%), Gaps = 25/368 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +   +  T+ NP V C+IVKDG VIG G T   G  HAEVQAL++
Sbjct: 2   FSDTDFAHMQRALALAARGMYTTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G +  G+T YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L
Sbjct: 62  ARSRGYDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++  E       +++R    R  + +K A S D    +    S  ITG  
Sbjct: 122 RDAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H  RA++ AIL GIGTV  D+P LT R        P RI++D    L LD+++++
Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVR-GIDTPRQPQRILVDSRLDLPLDARLLE 240

Query: 239 TALLAPVIIVTENDDPV---LALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291
               AP++I     D      A   + +   I+         DL  +L  L  RGV  L 
Sbjct: 241 G---APLLIFCGRLDAAGELRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344
           VE G  +  S +  R VD +++Y +  ++G           P+ LE             +
Sbjct: 298 VEAGHKLNGSLLRERCVDELLVYLAPSLLGADAAGMFDLAAPASLEA---RTRLSFHGIE 354

Query: 345 YFGSDVCL 352
             G D+ +
Sbjct: 355 RVGDDLRI 362


>gi|319786233|ref|YP_004145708.1| riboflavin biosynthesis protein RibD [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464745|gb|ADV26477.1| riboflavin biosynthesis protein RibD [Pseudoxanthomonas suwonensis
           11-1]
          Length = 365

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 124/357 (34%), Positives = 180/357 (50%), Gaps = 8/357 (2%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
              +FD   M+ AL+ +   +     NP V C++ KDG V+G G     G PHAEV AL 
Sbjct: 4   TFDAFDHACMARALQLAARGLYTARPNPVVGCVVAKDGAVVGEGWHPRAGEPHAEVFALR 63

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           EAGE ARGATAYVTLEPC+H+GR+PPCA+ +++ G+ RVV  + DP  RV G G   L  
Sbjct: 64  EAGERARGATAYVTLEPCAHHGRTPPCAEALVQAGVARVVAAMRDPFPRVDGAGFARLQA 123

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +   +ME + +     +L+R    R  + +K+A S D    MA   S  ITG  ++
Sbjct: 124 AGIAVAAGLMEGQARDLNRGFLSRFTRGRPWLRVKLAASLDGRTAMASGESKWITGEAAR 183

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-PMRIILDPHFKLSLDSKIIKT 239
             V   RA+S AIL G  TVLADDP LT RL        P+R++LD   +     ++   
Sbjct: 184 ADVQRWRARSGAILTGADTVLADDPALTVRLGDATPFQPPLRVVLDSRLRSLAMPRVRDG 243

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           +  AP + +   D         +  +        DL+  L +L GR +  + VE G A+ 
Sbjct: 244 S--APTLYLHGPDAVPPPGLDAEFAVVPTRDGHLDLESALRLLAGRDINEVQVEAGPALC 301

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCL 352
            + +++ LVD ++LY++ +V+G+   P     G            V     G D  L
Sbjct: 302 GALLHAGLVDELLLYQAPLVLGDTARPLFAGLGIEAMAQRLRLELVEAAMVGDDRRL 358


>gi|254246078|ref|ZP_04939399.1| Pyrimidine reductase [Burkholderia cenocepacia PC184]
 gi|124870854|gb|EAY62570.1| Pyrimidine reductase [Burkholderia cenocepacia PC184]
          Length = 373

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 122/368 (33%), Positives = 180/368 (48%), Gaps = 25/368 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +   +  T+ NP V C+IVKDG VIG G T   G  HAEVQAL++
Sbjct: 2   FSDTDFAHMQRALALAARGMYTTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G +  G+T YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L
Sbjct: 62  ARSRGYDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++ +E       +++R    R  + +K A S D    +    S  ITG  
Sbjct: 122 RDAGIDVRCGLLANEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H  RA++ AIL GIGTV  D+P LT R        P RI++D    L LD+++++
Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVR-GIDTPRQPQRILVDSRLDLPLDARLLE 240

Query: 239 TALLAPVIIVTENDDPV---LALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291
               AP++I     D      A   + +   I+         DL  +L  L  RGV  L 
Sbjct: 241 G---APLLIFCGRLDAAGELRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344
           VE G  +  S +    VD +++Y +  ++G           P+ LE             +
Sbjct: 298 VEAGHKLNGSLLREHCVDELLVYLAPSLLGADAAGMFDLAAPASLEA---RTRLSFHGIE 354

Query: 345 YFGSDVCL 352
             G D+ +
Sbjct: 355 RVGDDLRI 362


>gi|303231427|ref|ZP_07318158.1| riboflavin biosynthesis protein RibD [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513864|gb|EFL55875.1| riboflavin biosynthesis protein RibD [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 406

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 123/391 (31%), Positives = 180/391 (46%), Gaps = 41/391 (10%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++   G TS NP V  ++VK+  ++G G     G  HAEV AL+ AG  
Sbjct: 4   DELYMKRAISLAKMATGHTSPNPLVGAVVVKNNTIVGEGYHHKAGEAHAEVHALDAAGYN 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGAT YVTLEPC+HYG++PPCA+ ++E GI RVV+   DP+  V+G+G+Q L++ GI +
Sbjct: 64  ARGATLYVTLEPCAHYGKTPPCAKRVVESGIARVVIGSTDPNPLVAGKGIQILTEAGIEV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +   E       + T     +  +T+K A+S D  I      S  IT   S+   H+
Sbjct: 124 TTDVCVDECIQLNEHFFTFIQTHKPFVTIKSAMSLDGKIATFTGQSQWITNESSRKDGHV 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL------------------NGLQEHSPMRIILDPH 227
           LRA  DA+LVGIGT+LADDP L CRL                  N L+ H P  IILD  
Sbjct: 184 LRATHDAMLVGIGTILADDPLLNCRLTRDELYEALINRHDVSIDNTLEVHQPDIIILDSQ 243

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-------------- 273
            +   D+K+        +I V +       +A       +     +              
Sbjct: 244 GRTPTDAKVFTIPNRKVIIYVAKGCPEQRRIALANVGAIVKELPTKSVRQGRTTDVAIDI 303

Query: 274 ---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
              D++  L  L  +  TS+LVEGG+ +  SF+ S   D I+ Y   +VIG     S + 
Sbjct: 304 KKIDIQACLEHLGEQEYTSVLVEGGSTIISSFVESLAFDKIVTYIGNLVIGGANSTSAVG 363

Query: 331 EGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
                                 +++ +E   
Sbjct: 364 GTGFATLHEAPTLEFDSSRILDNNIRIESYR 394


>gi|148654182|ref|YP_001281275.1| riboflavin biosynthesis protein RibD [Psychrobacter sp. PRwf-1]
 gi|148573266|gb|ABQ95325.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Psychrobacter sp. PRwf-1]
          Length = 368

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 123/364 (33%), Positives = 180/364 (49%), Gaps = 36/364 (9%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P    D  +M+ A+  ++  +  T  NP+V C+IV + +++G G     G PHAEV AL 
Sbjct: 25  PPKKQDIYYMNLAIEEAKKGLFTTRPNPAVGCVIVNNNLIVGTGYHPQAGQPHAEVFALR 84

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           EA + A+GATAYVTLEPCSH GR+PPCAQ +I  G+ RVVV   DP+ +V+GRG+  L  
Sbjct: 85  EAKDNAKGATAYVTLEPCSHTGRTPPCAQALINSGVSRVVVAGLDPNPKVAGRGIAMLKA 144

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +   +   + +     +L     +  ++ LKIA S D    MA   S  ITG  ++
Sbjct: 145 AGIEVTVGVSTQQAEQLNLGFLKAMRTQMPYVRLKIASSLDGRTAMASGESKWITGPAAR 204

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----QEHSPMRIILDPHFKLS-LDS 234
             V  LRA S AI+ G  T++ D+P L  R + L     +   P  ++LD   +L     
Sbjct: 205 EDVQKLRALSGAIITGSQTIIDDNPSLNVRSSQLGVALDKVPQPKIVVLDRRQRLDQAHY 264

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVE 293
           K+               + P   L               DL  LL  LV    V  +LVE
Sbjct: 265 KVF--------------ESPDTLLWAE-----------HDLTALLHQLVTQYQVQDVLVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDV 350
            G+ V+ SFI + LVD +I+Y++  ++G    P     ++  +L+  F  V     GSD+
Sbjct: 300 AGSQVSGSFIEAGLVDELIVYQAPCLLGHSAKPMLNLTVDNLFLQHRFERVSVSEVGSDL 359

Query: 351 CLEY 354
            L Y
Sbjct: 360 KLVY 363


>gi|68171296|ref|ZP_00544696.1| Riboflavin biosynthesis protein RibD [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88658608|ref|YP_506994.1| riboflavin biosynthesis protein RibD [Ehrlichia chaffeensis str.
           Arkansas]
 gi|67999277|gb|EAM85926.1| Riboflavin biosynthesis protein RibD [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88600065|gb|ABD45534.1| riboflavin biosynthesis protein RibD [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 360

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 138/354 (38%), Positives = 202/354 (57%), Gaps = 13/354 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           +D +FMS ALR +R  +G    NP+V C++V  G+V+GRG T  GG PHAEV AL  AG 
Sbjct: 4   YDKKFMSLALRIARRGLGNVFPNPAVGCIVVNHGMVVGRGYTQVGGRPHAEVIALNNAGH 63

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            A+G+T YVTLEPCSHYG++ PCA  +I+ G++R+V+   DPDVRVSG G++ L   GI 
Sbjct: 64  LAKGSTVYVTLEPCSHYGQTGPCALKLIDAGVKRMVIAAKDPDVRVSGNGIELLRNAGID 123

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M  E +     +   +++ R  IT+K+A + D  I +    S  IT  +++N VH
Sbjct: 124 VKCGVMYEEARELNIGFFYSKIKNRPFITVKLASTLDGKIALKDGNSRWITNELTRNWVH 183

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             R+  DAI+VG  T++ D+P L  RL GL+ +SP+RI++D   K+     IIKT+ + P
Sbjct: 184 KQRSMYDAIMVGSNTIVQDNPMLNTRLPGLECYSPVRIVIDRFGKVCDYHNIIKTSDVIP 243

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILV-GRGVTSLLVEGGAAVAHS 301
             I+T ND P   L       + +  D +D  L+  + +L    G+T L VEGG  +   
Sbjct: 244 TYILT-NDVPQTKLGK----ASCLVVDDKDNFLRSAMKMLSVKIGITRLFVEGGGVLITE 298

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVC 351
            + ++L+D II  RS  + G   IPS  +   L      NF  V   YF  D+ 
Sbjct: 299 LLKNQLIDRIIWCRSNKIFGNDAIPSIGDLDILTLQCGYNFRAVDTLYFKDDIV 352


>gi|92117361|ref|YP_577090.1| riboflavin biosynthesis protein RibD [Nitrobacter hamburgensis X14]
 gi|91800255|gb|ABE62630.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Nitrobacter hamburgensis X14]
          Length = 383

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 149/364 (40%), Positives = 205/364 (56%), Gaps = 12/364 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D RFM  AL   R  +G ++ NP+V  +IVKD +++GRG T  GG PHAE +AL  AG
Sbjct: 19  AVDLRFMQLALALGRRSLGASAPNPAVGAVIVKDDVIVGRGWTQPGGRPHAEAEALRRAG 78

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGAT YVTLEPCSH G++PPCA  +I  GI RVV  ++DP   V+G+G   L   GI
Sbjct: 79  EAARGATLYVTLEPCSHVGKTPPCADAVIAAGITRVVSAIEDPTPEVAGQGHARLRAAGI 138

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   +  +E       +  R  +KR H+ LK+AVS D  I  AG   V ITG  +K +V
Sbjct: 139 SVDVGLCAAEAAHHHAGHFRRIRDKRPHVILKLAVSSDGRIAAAGGVPVAITGEAAKARV 198

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           HLLRAQ +AILVGIGTVLAD+P LTCRL G++  SP+R++LD   ++  DS+++++A   
Sbjct: 199 HLLRAQCNAILVGIGTVLADNPLLTCRLPGMEARSPLRVVLDHALRIPHDSRLVRSARET 258

Query: 244 PVIIVTEN-DDPVLALAFRKKNINIIY------CDCRDLKKLLTILVGRGVTSLLVEGGA 296
           P+ ++  +     +A+      + ++           DL  +L  L  RGVT L+VEGGA
Sbjct: 259 PLWVMASDLAQAPVAMKLGAAGVQVLRVPVAAGAPGLDLAAILRALSERGVTRLVVEGGA 318

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
            VA SF+ + LVD   L R    IG+ G+ +    PL        F          D   
Sbjct: 319 RVASSFVAAGLVDEAWLLRGPDPIGDDGVAALGALPLTAITGSPQFRACASKTLDQDTLA 378

Query: 353 EYIG 356
            Y  
Sbjct: 379 IYER 382


>gi|259416594|ref|ZP_05740514.1| riboflavin biosynthesis protein RibD [Silicibacter sp. TrichCH4B]
 gi|259348033|gb|EEW59810.1| riboflavin biosynthesis protein RibD [Silicibacter sp. TrichCH4B]
          Length = 366

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 137/365 (37%), Positives = 196/365 (53%), Gaps = 11/365 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S  D RFM  AL   R   G T  NP+V C+IVK G V+GRG T  GG PHAE  AL +
Sbjct: 1   MSKSDHRFMGLALSLGRRGQGRTWPNPAVGCVIVKQGRVVGRGWTQPGGRPHAEPMALAQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  A GATAYV+LEPCSH+G++PPCAQ +I+ GI RVV  ++D D RVSG+G + L   
Sbjct: 61  AGAAAHGATAYVSLEPCSHHGKTPPCAQALIDAGIARVVAAIEDSDPRVSGQGFEMLRAA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   +   E       +  R  + R  +TLK+A S D  I      S  ITG  ++ 
Sbjct: 121 GIKVTTGIRTEEAGFDHEGFFLRTEQGRPFVTLKLASSFDGRIATGSGQSQWITGPEARR 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH +RA+ DA++VG GT  ADDP LT R  G+ +H P R+++  H  L L S++ ++A 
Sbjct: 181 MVHAMRARHDAVMVGAGTARADDPSLTVRDLGI-DHQPARVVVSRHLDLPLMSQLARSAK 239

Query: 242 LAPVIIVT-ENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGA 296
             P+ +      D     A+      ++ C+      D   +L  L   G+T +  EGG 
Sbjct: 240 DIPLYLCHGTGADTERLRAWEGLGAQLLSCNALGTQLDPHDVLEQLGSAGLTRVFCEGGG 299

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS--PLEEGYLE--KNFMCVRRDYFGSDVCL 352
           A+A + +   LVD +I + + + IG  G+PS   L  G+L+    F  +     G+D+  
Sbjct: 300 ALAATLLAHDLVDELIGFSAGLAIGAEGLPSIGALGIGHLKEAPRFELIETRPVGADILH 359

Query: 353 EYIGK 357
            +   
Sbjct: 360 RWRRP 364


>gi|221201163|ref|ZP_03574203.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans
           CGD2M]
 gi|221206384|ref|ZP_03579397.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans
           CGD2]
 gi|221213661|ref|ZP_03586635.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans
           CGD1]
 gi|221166450|gb|EED98922.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans
           CGD1]
 gi|221173693|gb|EEE06127.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans
           CGD2]
 gi|221179013|gb|EEE11420.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans
           CGD2M]
          Length = 373

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 122/368 (33%), Positives = 183/368 (49%), Gaps = 25/368 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +   +  T+ NP V C+IVK G VIG G T   G  HAEVQAL++
Sbjct: 2   FSDIDFAHMQRALALAARGMYTTTPNPRVGCVIVKHGEVIGEGHTQPPGQDHAEVQALKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G +  G+T YVTLEPCSH+GR+PPCA  +IE  + +VV  ++DP+  VSGRGL  L
Sbjct: 62  ARARGHDVAGSTVYVTLEPCSHFGRTPPCANALIEARVAKVVAAMEDPNPLVSGRGLGML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++  E       +++R    R  + +K A S D    +    S  ITG  
Sbjct: 122 RDAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKAAASLDGRTALPSGESQWITGEA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H  RA++ AIL GIGTV  DDP+LT R        P R+++D   +L LD+++++
Sbjct: 182 ARADGHAWRARACAILTGIGTVREDDPQLTVR-GIDTPRQPQRVLVDSRLELPLDARLLE 240

Query: 239 TALLAPVIIVT---ENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291
               AP++I     + D    A A + +   I+         DL  +L+ L  RG+  L 
Sbjct: 241 G---APLLIFCGRLDADGEARASALKARGAEIVSLANAHGKVDLGAMLSALGARGINELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344
           VE G  +  S +  R VD +++Y +  ++G           P+ L+             +
Sbjct: 298 VEAGHKLNGSLLRERCVDELLVYLAPSLLGADAAGMFDLAAPASLDA---RTRLTFHHIE 354

Query: 345 YFGSDVCL 352
             G D+ +
Sbjct: 355 RIGDDLRI 362


>gi|325143820|gb|EGC66136.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
           M01-240013]
          Length = 370

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 128/367 (34%), Positives = 185/367 (50%), Gaps = 14/367 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  ALR +      TS NP V C+I     ++G+G     G PHAEV AL +
Sbjct: 2   FSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALHQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   
Sbjct: 62  AGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEVA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++ 
Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDTRA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            V +LRA+S A+L GIGTVLAD+P L  R        P RI+LD   +L LDS ++ T  
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPLDSHLL-TDG 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGG 295
            +P  I T   +      +R+     I           DL  L+ +L   G   ++VE G
Sbjct: 240 QSPTYIATLERNEDRLHPYREHAHIRILMPSETAGGKIDLHHLMRLLADEGFGEIMVEAG 299

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL-----EEGYLEKNFMCVRRDYFGSDV 350
           + +  +F+   L D I+LYRS  ++G GG                  +  V  +  G D+
Sbjct: 300 SELTSAFLAEDLADEIVLYRSPKILGGGGGGLFCLLENRAALSAPPLWTPVSSEILGHDI 359

Query: 351 CLEYIGK 357
              +   
Sbjct: 360 KTVFRKN 366


>gi|82701141|ref|YP_410707.1| riboflavin biosynthesis protein RibD [Nitrosospira multiformis ATCC
           25196]
 gi|82409206|gb|ABB73315.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Nitrosospira
           multiformis ATCC 25196]
          Length = 366

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 183/365 (50%), Gaps = 13/365 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D RFM+ ALR +   +  TS NP V C++V+DG V+G G     G  HAE+ AL  
Sbjct: 2   FSPTDYRFMAQALRLAEKGLYSTSPNPRVGCVLVRDGQVVGTGWHERAGEAHAEINALAA 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  ARGA AY+TLEPCSHYGR+PPCA  +++ G+ +V+  + DP+  V+GRG   L + 
Sbjct: 62  AGPAARGALAYLTLEPCSHYGRTPPCADALVQAGVAKVITAMQDPNPLVAGRGCALLEEA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   +ME+E K     +++R    R  + +KIA S D    +    S  IT   ++ 
Sbjct: 122 GIEVKTGLMEAEAKALNIGFVSRMTRGRPWVRVKIAASLDGKTALNNGSSQWITSAAARR 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
             H  RA+S A++ GIGTVLADDP+LT R        PM +++D    + LD+ +++ A 
Sbjct: 182 DGHRWRARSCAVMTGIGTVLADDPQLTVRHIH-TSRQPMPVVVDRGLDIPLDAGLLRGAG 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAA 297
               ++ T        +A R    ++I         DL  ++  L    +  +LVE G+ 
Sbjct: 241 E---LVFTAAASEGKIVALRDVGAHVILLPDSAGNVDLAAMMRRLADLEINEVLVEAGSG 297

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLE 353
           +    I + LVD  ++Y +  +IG           L     ++          G D+ + 
Sbjct: 298 LNGGLIQADLVDEFVIYLAPCLIGNAARDMLKLPELSNLEDKRALKIHNVRAVGQDIRII 357

Query: 354 YIGKN 358
             G +
Sbjct: 358 ARGPD 362


>gi|66047689|ref|YP_237530.1| riboflavin biosynthesis protein RibD:riboflavin-specific deaminase,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63258396|gb|AAY39492.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
          Length = 366

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 128/356 (35%), Positives = 182/356 (51%), Gaps = 20/356 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL  +R  +  T  NP V C+IV++G ++G G  A  G PHAEV AL +AGE ARGA
Sbjct: 1   MARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQAGELARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPCSH GR+PPCA  +IE G+ RVV  + DP+  VSGRGL  L   GI +   +
Sbjct: 61  TAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNAGIGVQCGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +ESE +     +L R      ++ +K+A+S D    MA   S  ITG  +++ V  LRAQ
Sbjct: 121 LESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSAVQRLRAQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSLDSKIIKT 239
           S  +L G  TVLAD   LT R + L             +P+R+++D   ++ LD+   + 
Sbjct: 181 SSVVLSGADTVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLRVPLDAPFFQA 240

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVTSLLVEGGA 296
                 ++VT            + +  +   D     DL++L+  L  RGV  +LVE G 
Sbjct: 241 GSA---LVVTCAAASARGRYQEEGHEMLALADSAGHVDLRRLMDELAARGVNEVLVEAGP 297

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSD 349
            +A +F    LVD   L+ +   +G    P    PL +         V     G+D
Sbjct: 298 RLAGAFARLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIVEMRAVGND 353


>gi|260772212|ref|ZP_05881128.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio metschnikovii CIP 69.14]
 gi|260611351|gb|EEX36554.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio metschnikovii CIP 69.14]
          Length = 369

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 116/368 (31%), Positives = 183/368 (49%), Gaps = 27/368 (7%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             S+ D + M+ A++ ++     T+ NP V C+I + G ++G G     G PHAEV AL 
Sbjct: 4   NFSAVDYQMMARAIQLAQRGRFTTAPNPKVGCVITQQGRIVGEGFHYRAGQPHAEVHALR 63

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            A E ARGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +VSGRG+  L +
Sbjct: 64  MAKEYARGATAYVTLEPCSHYGRTPPCAEGLIQAGVAKVICAMQDPNPQVSGRGIAMLRE 123

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +   ++E++ K+   A++ R      ++ LK+A S D    +A   S  IT   ++
Sbjct: 124 AGIEVEVGLLEADAKVLNPAFIKRMQTGMPYVQLKLAASLDGQTALANGESQWITSAQAR 183

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFK 229
             V + RAQ+ A+L    TV+AD+  L  R               +   P R+ILD   +
Sbjct: 184 QDVQVYRAQAGAVLSTSQTVIADNASLAVRWSELPADVQQQYPHAELRQPTRVILDRQHQ 243

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVT 288
           L     +  T   +P+I V E D         +  + +      DL+  L  L  +  + 
Sbjct: 244 LHQSLALYAT--TSPIIRVAEQDA--------ELCVPLNEHQQLDLRDTLASLAEQYQIN 293

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRD 344
            L VE G  +A S +  +LVD +I+Y +  ++G  G       G+   +     +     
Sbjct: 294 HLWVEAGPTLAKSLLEQQLVDELIIYLAPKIMGSDGRGLLGALGFTHMDQALGLVIQDCR 353

Query: 345 YFGSDVCL 352
             G D+ L
Sbjct: 354 MVGPDLRL 361


>gi|90406961|ref|ZP_01215152.1| Putative pyrimidine deaminase/pyrimidine reductase [Psychromonas
           sp. CNPT3]
 gi|90312003|gb|EAS40097.1| Putative pyrimidine deaminase/pyrimidine reductase [Psychromonas
           sp. CNPT3]
          Length = 381

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 122/373 (32%), Positives = 185/373 (49%), Gaps = 25/373 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D  +MS AL  ++     ++ NP+V C+IV D IV+G G     G  HAEV AL  
Sbjct: 6   FSEQDKEYMSRALELAKKGRFTSAPNPNVGCVIVLDDIVVGTGFHFKAGQGHAEVYALAM 65

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG +A+ +T YVTLEPCSH+GR+PPCA  +I+ G++RV V + DP+ +V+G+G++ L   
Sbjct: 66  AGSKAQSSTCYVTLEPCSHFGRTPPCALALIKAGVKRVCVAMRDPNPQVAGQGIKLLQDA 125

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E + K     ++ R + KR+ +TLK+  S D    +    S  ITG  S+ 
Sbjct: 126 GIEVSVGLLEPQAKQLNLGFINRMLHKRARVTLKLGASLDGKTALKNGKSQWITGSQSRC 185

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-------------HSPMRIILDPHF 228
            V   RAQ  AIL    TVLADDP L  R   LQ+               P+RIILD   
Sbjct: 186 DVQHFRAQQSAILSSASTVLADDPSLNVRFEELQQSMYFKGEISAEQLRQPLRIILDSRN 245

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILV 283
           KL+   KI        +I+V       L+       +  + C        DL+ LL +L 
Sbjct: 246 KLTGQEKIFSLPGD--IILVALQLRHDLSDFKGVAQVQSVVCPADEAGNIDLRSLLKLLN 303

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FM 339
              +  + +E GA +A +F  ++LVD  ILY++  ++G         + +   +      
Sbjct: 304 RYELNDIWLEVGATLAGAFFKAQLVDQFILYQAPKLMGAQARSLVNLDDFSTMDDVLQLT 363

Query: 340 CVRRDYFGSDVCL 352
                  G+D+ +
Sbjct: 364 LQEVTVIGNDIRI 376


>gi|307546181|ref|YP_003898660.1| riboflavin biosynthesis protein RibD [Halomonas elongata DSM 2581]
 gi|307218205|emb|CBV43475.1| riboflavin biosynthesis protein RibD [Halomonas elongata DSM 2581]
          Length = 384

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 116/376 (30%), Positives = 190/376 (50%), Gaps = 20/376 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M   +   R+M+ ALR +R  +  T+ NP V C++VK+G VIG G     G PHAE+ AL
Sbjct: 1   MMSPTPPERWMARALRLARHGLYTTAPNPRVGCVLVKEGRVIGEGWHERAGEPHAEIHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE ARGATAYVTLEPCSH GR+ PCA  ++E G+ RVVV + DP+ +V+GRG++ L 
Sbjct: 61  RNAGEAARGATAYVTLEPCSHQGRTGPCAVALVEAGVARVVVAMRDPNPQVAGRGIERLR 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           Q GI + + ++E+E       ++ R    R  + +K+A+S D    M    S  ITG  +
Sbjct: 121 QAGIEVEEGVLEAEAHALNSGFIARMARGRPFVRMKMAMSLDGRTAMRSGESQWITGPCA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--------EHSPMRIILDPHFKLS 231
           + +V  LRA+S  ++ G+ +V+ D+  LT R   L+           PMR+++D   +L 
Sbjct: 181 RREVQRLRARSSVVMTGVESVIFDNSRLTVRAEQLELDNAEAIASRQPMRVVVDSRLRLP 240

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGR- 285
           L +  ++      ++   +  D        +    ++          DL+ LL+ L    
Sbjct: 241 LAAACLREPGR-TLVATVDGHDDEHREKLEQAGAEVVVLPAEEGGRVDLEALLSYLASHE 299

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCV 341
               +L+E GA +A + +++ LVD + L+ +  ++G    P     G      ++     
Sbjct: 300 EANEVLLETGATLAGAMLDAGLVDEMQLFVAPTLLGGEARPLFELPGLTRMDEQRPLDIR 359

Query: 342 RRDYFGSDVCLEYIGK 357
                G D  +  + +
Sbjct: 360 DIRAVGDDWRITAVPR 375


>gi|148976617|ref|ZP_01813304.1| riboflavin-specific deaminase [Vibrionales bacterium SWAT-3]
 gi|145963968|gb|EDK29226.1| riboflavin-specific deaminase [Vibrionales bacterium SWAT-3]
          Length = 367

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 114/368 (30%), Positives = 181/368 (49%), Gaps = 27/368 (7%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQAL 60
             S  D + MS A+  ++  +  T+ NP+V C+IV+ DG ++G G  A  G PHAEV A+
Sbjct: 3   NFSPLDFQMMSRAIHLAKRGIYTTAPNPNVGCVIVQTDGQIVGEGFHAKAGEPHAEVHAM 62

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AG++A+GAT YVTLEPCSHYGR+PPCA+ +I+  + +V+  + DP+ +V+GRG++ L 
Sbjct: 63  RMAGDKAKGATVYVTLEPCSHYGRTPPCAEGLIKAQVAKVICAMQDPNPKVAGRGIKMLR 122

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI +   ++E +      A++ R       + LK+A S D    +A   S  IT   +
Sbjct: 123 DAGIEVEIGLLEQDALDLNPAFIKRMQTGMPFVQLKMAASLDGQTALANGQSQWITSPAA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228
           +  V   RA++ A+L    TV+ D+  L  R   L               P+R+ILD   
Sbjct: 183 RRDVQNYRAKAGAVLSTSQTVIDDNASLNVRWAELPSSAQAHYAEANVRQPVRVILDRQN 242

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           +L  + K+ ++    PV+ V E    +         I        DL +L+  L    + 
Sbjct: 243 QLRPELKLYQSP--TPVLRVAEASADIE--------IGTTETGQLDLHELMCQLPANHID 292

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRD 344
            + VE GA +A S I ++LVD +ILY +  ++G  G       G        +       
Sbjct: 293 HIWVEAGATLAKSLIEAQLVDELILYLAPKLMGSDGRGLMGALGLTSMSDVIDLEIKDVR 352

Query: 345 YFGSDVCL 352
             G D+ +
Sbjct: 353 QVGVDIRI 360


>gi|238019274|ref|ZP_04599700.1| hypothetical protein VEIDISOL_01138 [Veillonella dispar ATCC 17748]
 gi|237863973|gb|EEP65263.1| hypothetical protein VEIDISOL_01138 [Veillonella dispar ATCC 17748]
          Length = 404

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 124/391 (31%), Positives = 180/391 (46%), Gaps = 39/391 (9%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M  A+  ++   G TS NP V  ++VKD  +IG G     G  HAEV AL +AG+
Sbjct: 3   DDVAYMKRAIALAKLATGHTSPNPLVGAVVVKDNTIIGEGYHHKAGTAHAEVHALNQAGD 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            A+GAT YVTLEPCSHYG++PPCA  IIE GI +VVV   DP+  VSG+G+  L + GI 
Sbjct: 63  NAKGATLYVTLEPCSHYGKTPPCALRIIEAGIAKVVVGSTDPNPLVSGKGMDLLREAGIE 122

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V  +   E       + T     +  +T+K A+S D  I      S  IT   S+   H
Sbjct: 123 VVCPVCSEECAELNEHFFTYIQTGKPFVTIKSAMSLDGKIATFTGQSQWITNDSSRRDGH 182

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------------EHSPMRIILDPHF 228
           +LRA  DA+LVGIGT+LAD+P+L CRL   +                 H P  IILD   
Sbjct: 183 ILRATHDAMLVGIGTILADNPQLNCRLTDTELSEALLDTSILDETIHVHQPDVIILDSLG 242

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI-----------------NIIYCD 271
           +    S + +       I V++        A  +                     +I   
Sbjct: 243 RTPTTSHVFEVDNRKVHIFVSKGCPKERIQALEQVGALVTVVESVATRKSKSTDIVIDIK 302

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
              +  +LT L   G TS+LVEGG+A+  SF+ +   D ++ Y    +IG       +  
Sbjct: 303 KLSIDDILTKLGDFGYTSVLVEGGSAIISSFVETLNFDKVVTYIGNTIIGGTEATPAVGG 362

Query: 332 GYLE-----KNFMCVRRDYFGSDVCLEYIGK 357
              E           + +   +++ +E   +
Sbjct: 363 RGFESLESSPQLTFTKTNILDNNIRIEAYRQ 393


>gi|218710376|ref|YP_002417997.1| riboflavin biosynthesis protein RibD [Vibrio splendidus LGP32]
 gi|218323395|emb|CAV19572.1| Riboflavin biosynthesis protein ribD [Vibrio splendidus LGP32]
          Length = 374

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 109/368 (29%), Positives = 175/368 (47%), Gaps = 27/368 (7%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQAL 60
             +  D + MS A++ ++  +  T+ NP+V C+IV+ DG ++G G  A  G  HAEV A+
Sbjct: 3   NFTPLDFQMMSRAIKLAKRGIYTTAPNPNVGCVIVQTDGQIVGEGFHAKAGEAHAEVHAM 62

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AG++A+GA AYVTLEPCSHYGR+PPCA+ +I+  + +V+  + DP+ +V+GRG++ L 
Sbjct: 63  RMAGDKAKGAIAYVTLEPCSHYGRTPPCAEGLIKAQVAKVICAMQDPNPKVAGRGIKMLR 122

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
              I +   ++E +      A++ R       + LK+A S D    +    S  IT   +
Sbjct: 123 DACIEVEIGLLEQDALDLNPAFIKRMQTGMPFVQLKMAASLDGQTALENGQSQWITSPEA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228
           +  V   RA+S A+L    TV+ D+  L  R   L               P+R+ILD   
Sbjct: 183 RRDVQNYRAKSGAVLSTSQTVIEDNASLNVRWTELPSSIKEHYAEDELRQPIRVILDRQN 242

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           +L  + K+ +T      +  T  D            +        DL  L+  L    + 
Sbjct: 243 QLYPELKLFQTPTSVLRVAETSAD----------IEVETTDAGQLDLHDLMRQLPANHID 292

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRD 344
            + VE GA +A S I ++LVD +ILY +  ++G  G       G        +       
Sbjct: 293 HIWVEAGATLAKSLIEAQLVDELILYLAPKLMGSDGRGLMGALGLTSMSDVIDLEIKDVR 352

Query: 345 YFGSDVCL 352
             G D+ +
Sbjct: 353 QVGVDIRI 360


>gi|49088842|gb|AAT51612.1| PA4056 [synthetic construct]
          Length = 374

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 123/365 (33%), Positives = 178/365 (48%), Gaps = 22/365 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + D  +M+ AL  +R  +  T  NP V C++VKDG V+G G     G PHAEV AL +
Sbjct: 1   MYAADPLYMARALELARQGLYSTQPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q 
Sbjct: 61  AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E+E +     ++ R       + +K+A+S D    MA   S  ITG  +++
Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARS 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  L A+S  +L G  T+LADD  L  R + L              P+R+++D   ++ 
Sbjct: 181 AVQRLSARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRVP 240

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGV 287
           L+S   +     P ++ T          F+     ++         DL KLL  L  RG 
Sbjct: 241 LESAFYQ---AGPALVATCAAASARER-FQDAGHELLALPSAEGHVDLHKLLLELAARGA 296

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRD 344
             +LVE G  +A +F    LVD   L+ +   +G    P    PL               
Sbjct: 297 NEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAQLRIDDIR 356

Query: 345 YFGSD 349
             G D
Sbjct: 357 AVGDD 361


>gi|254431289|ref|ZP_05044992.1| riboflavin biosynthesis protein RibD [Cyanobium sp. PCC 7001]
 gi|197625742|gb|EDY38301.1| riboflavin biosynthesis protein RibD [Cyanobium sp. PCC 7001]
          Length = 371

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 114/357 (31%), Positives = 178/357 (49%), Gaps = 11/357 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  AL+ +    G TS NP V C+++  +G ++G G  +  G  HAEV AL +AGE ARG
Sbjct: 1   MQRALQLANLGCGRTSPNPMVGCVVLDAEGRLVGEGYHSQAGEAHAEVGALRQAGERARG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
            TA VTLEPC H+GR+PPC+  ++  GIRRVVV + DPD +V+G G+  L   G+ +++ 
Sbjct: 61  GTAVVTLEPCCHHGRTPPCSDALLAAGIRRVVVAMADPDPQVAGGGIAQLRSAGVEVIEG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +   E +    A+L R   +R    LK A+  D    +    S  I+G  ++N VH LRA
Sbjct: 121 VAAEEARALNRAFLHRIAHRRPFGILKWAMGVDGRTALPNGASQWISGPEARNWVHALRA 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA++VG GTV ADDP LT R  G +   P+R++L     L   +++  TA  AP ++ 
Sbjct: 181 RCDAVVVGGGTVRADDPLLTSR--GRRHSEPLRVVLSRSLALPERARLWDTA-QAPTLVA 237

Query: 249 TENDDPVLAL-AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
              + P        ++ I  +  +  +   L+  L  RG   +L E GA +A + +    
Sbjct: 238 HGYEAPARRRFQLDQRGIERLVLEACEPWALMQELARRGCNQVLWECGAELATAALRQSC 297

Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIGKNL 359
           V  +    +  V+G     +P+ +           +        G D+  +     L
Sbjct: 298 VQEVAAVIAPKVMGGTLARTPVGDLGFTGMQQVPAWQTTCPQQLGDDLLWQLHAPEL 354


>gi|313894496|ref|ZP_07828060.1| riboflavin biosynthesis protein RibD [Veillonella sp. oral taxon
           158 str. F0412]
 gi|313440892|gb|EFR59320.1| riboflavin biosynthesis protein RibD [Veillonella sp. oral taxon
           158 str. F0412]
          Length = 404

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 121/391 (30%), Positives = 178/391 (45%), Gaps = 39/391 (9%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M  A+  ++   G TS NP V  ++VKD  +IG G     G  HAEV AL +AG+
Sbjct: 3   DDVAYMKRAIALAKLATGHTSPNPLVGAVVVKDNTIIGEGYHHKAGTAHAEVHALNQAGD 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            A+GAT YVTLEPCSHYG++PPCA  IIE GI +VVV   DP+  VSG+G+  L +  I 
Sbjct: 63  NAKGATLYVTLEPCSHYGKTPPCALRIIEAGIAKVVVGSTDPNPLVSGKGMDLLREASIE 122

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V  +   E       + T     +  +T+K A+S D  I      S  IT   S+   H
Sbjct: 123 VVCPVCSEECVELNEHFFTYIQTGKPFVTIKSAMSLDGKIATFTGQSQWITNESSRRDGH 182

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------------EHSPMRIILDPHF 228
           +LRA  DA+L+GIGT+LAD+P+L CRL   +                 H P  IILD   
Sbjct: 183 VLRATHDAMLIGIGTILADNPQLNCRLTDTELSEALLDTSILDEPIHVHQPDVIILDSLG 242

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---------------- 272
           +    S++ +       I V+         A       +   +                 
Sbjct: 243 RTPTTSRVFEVENRKVHIFVSTGCPKDRIQALENAGAIVTVVESISTRKSKSTDIVIDIK 302

Query: 273 -RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
              +  +LT L   G TS+LVEGG+A+  SF+ +   D ++ Y    +IG       +  
Sbjct: 303 KLSIDDILTKLGEIGYTSVLVEGGSAIISSFVETMNFDKVVTYIGNTIIGGTEATPAVGG 362

Query: 332 GYLE-----KNFMCVRRDYFGSDVCLEYIGK 357
              E           + +   +++ +E   +
Sbjct: 363 RGFESLESSPQLTFTKTNILDNNIRIEAYRQ 393


>gi|161830583|ref|YP_001596568.1| riboflavin biosynthesis protein RibD [Coxiella burnetii RSA 331]
 gi|161762450|gb|ABX78092.1| riboflavin biosynthesis protein RibD [Coxiella burnetii RSA 331]
          Length = 354

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 116/359 (32%), Positives = 180/359 (50%), Gaps = 14/359 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  SS D  ++  AL  +    G  + NPSV  ++VKD  +I  G     G PHAEV+A+
Sbjct: 1   MNDSSLD--YLKKALSLAEIRRGFCAPNPSVGAVVVKDDKIISTGFHKRSGLPHAEVEAI 58

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           +  G++ARGA  YVTLEPC H+G++PPC   II+ GI+ V   + DP++ V G+G++ L 
Sbjct: 59  KSLGDKARGAALYVTLEPCCHFGKTPPCTDLIIQSGIKDVYYGLHDPNLAVCGKGIEQLQ 118

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           + G+    +   E   F  +Y      KR  +T K+A+S D  I       V +TG   +
Sbjct: 119 RAGVNCFLIELPEINAFYESYRYWIKHKRPWVTAKLALSLDGKIVGNEGKPVRLTGEGLR 178

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              H  R +SDA+L  I T+L DDP+L  RL G +   P+ I LD H +L L++ +I   
Sbjct: 179 QYTHERRKKSDALLTTINTILTDDPKLNVRLQGEEIKKPIYI-LDTHLRLPLNA-LIHQT 236

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGA 296
             + ++      D        +KNI  I      +  DL ++L ++   G+  L +E G 
Sbjct: 237 AESIIVFHGNEADKKQQQRLMQKNIRCIEIARRSEGLDLNEVLDVIGNDGIHDLWIEAGG 296

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM--CVRRDYFGSDVCLE 353
               SF+   L++  ++Y +  ++G   +P+      L  +F    V    FG DV  E
Sbjct: 297 TCFQSFLKENLINRALIYIAPKILGSTAMPAF----QLPFSFSGYSVEWRQFGEDVMGE 351


>gi|59711307|ref|YP_204083.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Vibrio fischeri ES114]
 gi|59479408|gb|AAW85195.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Vibrio fischeri ES114]
          Length = 372

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 122/370 (32%), Positives = 189/370 (51%), Gaps = 22/370 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  ++ D   M  A+  ++  +  T+ NP+V C++VK+G +IG G     G PHAEV AL
Sbjct: 1   MTFTTQDHLMMQKAILLAKQGIYTTAPNPNVGCVLVKNGKIIGEGAHLKAGEPHAEVHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AG+EA+GATAYVTLEPCSHYGR+PPCA+ +I+ G+++V+  + DP+ +V+GRGL  L 
Sbjct: 61  RQAGKEAQGATAYVTLEPCSHYGRTPPCAEGLIKAGVKKVICAMVDPNPQVAGRGLAMLD 120

Query: 121 QKGIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI     ++E++ +     +LTR    +  + LK+A S D    +    S  IT   +
Sbjct: 121 EAGIETASGLLEADARALNPHFLTRMETGKPFVQLKMAASLDGKTALKNGVSQWITSKEA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228
           +  V   RAQS AIL    TV+ DD  L  R + L               PMR ILD   
Sbjct: 181 RQDVQRYRAQSGAILSTAKTVIDDDASLNVRWSDLPPSIQESYQQASIRQPMRFILDRQH 240

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTIL-VGRG 286
            L+ D K+ + +      +VT +      +   + ++     D + DLK+++  +     
Sbjct: 241 SLTSDLKLFQASDE----VVTISSQNTHPIGTSENHMQCRVDDGQLDLKEVVNKISRDFN 296

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVR 342
           V  + VE GA +A S IN  LVD +I+Y +  ++G  G        LE      +     
Sbjct: 297 VNHIWVEAGATLAASMINDNLVDELIIYLAPKLMGADGRSIINLIGLETMSEAIDLDIKD 356

Query: 343 RDYFGSDVCL 352
               G D+ +
Sbjct: 357 IRMVGKDIRI 366


>gi|317969093|ref|ZP_07970483.1| riboflavin biosynthesis protein ribD
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           [Synechococcus sp. CB0205]
          Length = 371

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 117/360 (32%), Positives = 183/360 (50%), Gaps = 10/360 (2%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
           M  S++   +M  AL+ +    G TS NP V C+++ + G ++G G     G PHAEV A
Sbjct: 12  MSSSAW-RPWMQRALQLAALGAGRTSPNPLVGCVVLDRQGALVGEGFHRRAGTPHAEVHA 70

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           L +AGE A+G TA V+LEPC H+GR+PPC++ +I  G+RRVVV + DPD RV+G G+  L
Sbjct: 71  LSQAGERAQGGTAIVSLEPCCHHGRTPPCSEALIAAGVRRVVVAMRDPDPRVAGGGIAQL 130

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI ++  + E+E +    +++ R    R    LK A+S D    +    S  I+G  
Sbjct: 131 QAAGIEVISGVCEAEAQALNRSFIQRVQTGRPWGILKWAMSLDGRTALPNGASQWISGPP 190

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++  VH LRAQ DA+LVG GTV AD+P LT R  G +   P+R++L     L  D+++  
Sbjct: 191 ARAWVHQLRAQCDAVLVGGGTVRADNPLLTSR--GQRSPEPLRVVLSRSLDLPQDTQLWD 248

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
            +L   +++              +  +  +       +  L +L  RG   +L E GA +
Sbjct: 249 QSLAQTLVLHGSKAPAERQQQLDRLGVEHLALPECQPRAALELLAQRGCNQVLWECGAEL 308

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE 353
           A + +    V  +    +  ++G     +PL E  L      + +   R    G+D  LE
Sbjct: 309 AAAALREGCVQQLAGVIAPKLLGGLAARTPLGELGLVDVNQAETWPQQRLRRLGNDWLLE 368


>gi|134294988|ref|YP_001118723.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Burkholderia vietnamiensis G4]
 gi|134138145|gb|ABO53888.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Burkholderia vietnamiensis G4]
          Length = 373

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 120/368 (32%), Positives = 180/368 (48%), Gaps = 25/368 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +   +  T+ NP V C+IVKDG VIG G T   G  HAEVQAL++
Sbjct: 2   FSDTDFAHMQRALALAARGMYTTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G +  GAT YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L
Sbjct: 62  ARARGCDVAGATVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++  E       +++R    R  + +K A S D    +    S  ITG  
Sbjct: 122 RDAGIDVRCGLLAYEAGELNIGFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H  RA++ AIL GIGTV  D+P LT R        P R+++D    L LD+++++
Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVR-GIDTPRQPQRVLVDSRLDLPLDARLLE 240

Query: 239 TALLAPVIIVTENDDPV---LALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291
               AP++I     D      A   + +   ++         DL  +L  L  RGV  L 
Sbjct: 241 G---APLLIFCGRLDAAGEIRANVLQSRGAEVVSLANMQGKVDLPGMLAALGARGVNELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344
           VE G  +  S +  + VD +++Y +  ++G           P+ L+             +
Sbjct: 298 VEAGHKLNGSLLREQCVDELLVYLAPSLLGSDAAAMFDLAAPTSLDG---RTRLAFHSVE 354

Query: 345 YFGSDVCL 352
             G D+ +
Sbjct: 355 RVGDDLRI 362


>gi|153209016|ref|ZP_01947210.1| riboflavin biosynthesis protein RibD [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165920291|ref|ZP_02219563.1| riboflavin biosynthesis protein RibD [Coxiella burnetii RSA 334]
 gi|212219122|ref|YP_002305909.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Coxiella
           burnetii CbuK_Q154]
 gi|120575553|gb|EAX32177.1| riboflavin biosynthesis protein RibD [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165916847|gb|EDR35451.1| riboflavin biosynthesis protein RibD [Coxiella burnetii RSA 334]
 gi|212013384|gb|ACJ20764.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Coxiella
           burnetii CbuK_Q154]
          Length = 354

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 116/359 (32%), Positives = 180/359 (50%), Gaps = 14/359 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  SS D  ++  AL  +    G  + NPSV  ++VKD  +I  G     G PHAEV+A+
Sbjct: 1   MNDSSLD--YLKKALSLAEIRRGFCAPNPSVGAVVVKDDKIISTGFHKRSGLPHAEVEAI 58

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           +  G++ARGA  YVTLEPC H+G++PPC   II+ GI+ V   + DP++ V G+G++ L 
Sbjct: 59  KSLGDKARGAALYVTLEPCCHFGKTPPCTDLIIQSGIKAVYYGLHDPNLAVCGKGIEQLQ 118

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           + G+    +   E   F  +Y      KR  +T K+A+S D  I       V +TG   +
Sbjct: 119 RAGVNCFLIELPEINAFYESYRYWIKHKRPWVTAKLALSLDGKIAGNEGKPVRLTGEGLR 178

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              H  R +SDA+L  I T+L DDP+L  RL G +   P+ I LD H +L L++ +I   
Sbjct: 179 QYTHERRKKSDALLTTINTILTDDPKLNVRLQGEEIKKPIYI-LDTHLRLPLNA-LIHQT 236

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGA 296
             + ++      D        +KNI  I      +  DL ++L ++   G+  L +E G 
Sbjct: 237 AESIIVFHGNEADKKQQQRLMQKNIRCIEIARRSEGLDLNEVLDVIGNDGIHDLWIEAGG 296

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM--CVRRDYFGSDVCLE 353
               SF+   L++  ++Y +  ++G   +P+      L  +F    V    FG DV  E
Sbjct: 297 TCFQSFLKENLINRALIYIAPKILGSTAMPAF----QLPFSFSGYSVEWRQFGEDVMGE 351


>gi|257138273|ref|ZP_05586535.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
           E264]
          Length = 369

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 114/354 (32%), Positives = 173/354 (48%), Gaps = 13/354 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
           M  AL  +   +  T+ NP V C+IVKD +VIG G T   G  HAEVQAL++A   G + 
Sbjct: 1   MQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDARARGNDL 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           R AT YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L   GI + 
Sbjct: 61  RDATVYVTLEPCSHFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAMLRDAGIDVR 120

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++  E       +++R    R  + +K A S D    +A   S  ITG  +++  H  
Sbjct: 121 CGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAARDDGHKW 180

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA++ AIL GIGTV  DDP+L  R        P R+++D    + L +++++   L    
Sbjct: 181 RARACAILTGIGTVREDDPQLNVR-GVDTPRQPRRVLIDSRLDIPLTARLLEGGSLLIFC 239

Query: 247 IVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
              +      A A R +   I+         DL  +L  L  RG+  L VE G  +  S 
Sbjct: 240 GALDAQSEARAQALRARGAEIVPLANVRGKVDLPAMLAALGERGINELHVEAGHKLNGSL 299

Query: 303 INSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCL 352
           +  R VD +++Y +  ++G         +                +  G D+ +
Sbjct: 300 LRERCVDELLVYLAPSLLGADAAAMFDLAAPASLIDRTRLAFHSVERVGDDLRI 353


>gi|29653981|ref|NP_819673.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Coxiella
           burnetii RSA 493]
 gi|29541244|gb|AAO90187.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Coxiella
           burnetii RSA 493]
          Length = 354

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 116/359 (32%), Positives = 180/359 (50%), Gaps = 14/359 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  SS D  ++  AL  +    G  + NPSV  ++VKD  +I  G     G PHAEV+A+
Sbjct: 1   MNDSSLD--YLKKALSLAEIRRGFCAPNPSVGAVVVKDDKIISTGFHKRSGLPHAEVEAI 58

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           +  G++ARGA  YVTLEPC H+G++PPC   II+ GI+ V   + DP++ V G+G++ L 
Sbjct: 59  KSLGDKARGAALYVTLEPCCHFGKTPPCTDLIIQSGIKAVYYGLHDPNLAVCGKGIEQLQ 118

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           + G+    +   E   F  +Y      KR  +T K+A+S D  I       V +TG   +
Sbjct: 119 RAGVNCFLIELPEINAFYESYRYWIKHKRPWVTAKLALSLDGKIVGNEGKPVRLTGEGLR 178

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              H  R +SDA+L  I T+L DDP+L  RL G +   P+ I LD H +L L++ +I   
Sbjct: 179 QYTHERRKKSDALLTTINTILTDDPKLNVRLQGEEIKKPIYI-LDTHLRLPLNA-LIHQT 236

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGA 296
             + ++      D        +KNI  I      +  DL ++L ++   G+  L +E G 
Sbjct: 237 AESIIVFHGNEADKKQQQRLMQKNIRCIEIARRSEGLDLNEVLDVIGNDGIHDLWIEAGG 296

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM--CVRRDYFGSDVCLE 353
               SF+   L++  ++Y +  ++G   +P+      L  +F    V    FG DV  E
Sbjct: 297 TCFQSFLKENLINRALIYIAPKILGSTAMPAF----QLPFSFSGYSVEWRQFGEDVMGE 351


>gi|37679045|ref|NP_933654.1| pyrimidine reductase [Vibrio vulnificus YJ016]
 gi|37197787|dbj|BAC93625.1| pyrimidine reductase [Vibrio vulnificus YJ016]
          Length = 368

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 116/367 (31%), Positives = 184/367 (50%), Gaps = 28/367 (7%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            ++ D + M  A+  ++  +  T+ NP+V C++++DG ++G G     G PHAEV A+  
Sbjct: 4   FTAIDRQMMLRAIALAKRGLYTTAPNPNVGCVLLRDGEIVGEGFHFRAGEPHAEVHAMRM 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A ++A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RVV  ++DP+ +V+GRG   L + 
Sbjct: 64  AADKAKGATAYVTLEPCSHYGRTPPCAEGLIKAGVSRVVCAMEDPNPQVAGRGFAMLREA 123

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++++E +    A++ R       + LK+A S D    +A   S  IT   ++ 
Sbjct: 124 GIEVSVGLLQAEAEALNPAFIKRMKTGMPFVQLKMAASLDGQTALANGKSQWITSPQARR 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V   RAQS AIL    TVLAD+  L  R + L               P R++LD   +L
Sbjct: 184 DVQRFRAQSGAILSTSKTVLADNASLNVRWSELPSSVQRALPQEQLRQPTRVVLDRQAEL 243

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-RGVTS 289
           S + K+ +T     +I+  + D P       + N          L +L T L   + +  
Sbjct: 244 SPELKLYQTEGE-RLIVGPKGDLPAPLDEHGQIN----------LPQLFTQLSQTQSINH 292

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDY 345
           L VE GA +A   I  +LVD +I+Y +  ++G  G       G        +        
Sbjct: 293 LWVEAGATLAAGLIKHQLVDELIVYLAPKLMGSDGRGLMGALGLQAMSHVIDLDIKDVRM 352

Query: 346 FGSDVCL 352
            G D+ +
Sbjct: 353 VGPDIRI 359


>gi|254511482|ref|ZP_05123549.1| riboflavin biosynthesis protein RibD [Rhodobacteraceae bacterium
           KLH11]
 gi|221535193|gb|EEE38181.1| riboflavin biosynthesis protein RibD [Rhodobacteraceae bacterium
           KLH11]
          Length = 358

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 133/354 (37%), Positives = 193/354 (54%), Gaps = 11/354 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL   R   G    NP+V C+IV+DG ++GRG T  GG PHAE QAL +AGE A+GA
Sbjct: 1   MALALSLGRRGQGNCWPNPAVGCVIVRDGRIVGRGWTQPGGRPHAEPQALAQAGEAAKGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           TAYV+LEPCSHYG++PPCAQ +I  G+ RVV  ++D D RV+G+G   L   GI V   +
Sbjct: 61  TAYVSLEPCSHYGKTPPCAQVLIGAGVARVVSAIEDSDPRVAGQGFDMLRAAGIEVTSGV 120

Query: 131 ESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            +E     H  +  +  + R  +TLK+A S D  I      S  ITG +++  VH +RA+
Sbjct: 121 LAEQAAQDHAGFFLKTEQGRPFVTLKLASSFDGRIATETGHSQWITGPMARRAVHAMRAR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DA++VG GT  ADDP LT R  G+  H P+R+++  H  + L   + +TA   PV +  
Sbjct: 181 HDAVMVGAGTARADDPSLTVRDLGVT-HQPVRVVVSRHLDVPLMGHLARTATQMPVWLCH 239

Query: 250 END-DPVLALAFRKKNINIIYC--DCRDLKK--LLTILVGRGVTSLLVEGGAAVAHSFIN 304
               D   A A+      +I C  D   ++   LL  L   G+T +  EGG+A+A S + 
Sbjct: 240 GPHPDAERARAWEGLGARLIPCALDGHHVEAADLLQQLGQAGLTRVFCEGGSALAASLLA 299

Query: 305 SRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
             LVD ++ + + + IG  G+P+     L+       F  +     G D+   +
Sbjct: 300 GDLVDELVGFTAGLAIGAEGLPAIGVLGLDTLEGAPRFDLIETQAIGGDILHRW 353


>gi|161525607|ref|YP_001580619.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans ATCC
           17616]
 gi|189349664|ref|YP_001945292.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Burkholderia
           multivorans ATCC 17616]
 gi|160343036|gb|ABX16122.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans ATCC
           17616]
 gi|189333686|dbj|BAG42756.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Burkholderia
           multivorans ATCC 17616]
          Length = 373

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 122/365 (33%), Positives = 182/365 (49%), Gaps = 19/365 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +   +  T+ NP V C+IVK G VIG G T   G  HAEVQAL++
Sbjct: 2   FSDIDFAHMQRALALAARGMYTTTPNPRVGCVIVKHGEVIGEGHTQPPGQDHAEVQALKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G +  G+T YVTLEPCSH+GR+PPCA  +IE  + +VV  ++DP+  VSGRGL  L
Sbjct: 62  ARARGHDVAGSTVYVTLEPCSHFGRTPPCANALIEARVAKVVAAMEDPNPLVSGRGLGML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++  E       +++R    R  + +K A S D    +    S  ITG  
Sbjct: 122 RDAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKAAASLDGRTALPSGESQWITGEA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H  RA++ AIL GIGTV  DDP+LT R        P R+++D   +L LD+++++
Sbjct: 182 ARADGHAWRARACAILTGIGTVREDDPQLTVR-GVDTPRQPQRVLVDSRLELPLDARLLE 240

Query: 239 TALLAPVIIVT---ENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291
               AP++I     + D    A A + +   I+         DL  +L+ L  RG+  L 
Sbjct: 241 G---APLLIFCGRLDADGEARASALKARGAEIVSLANAHGKVDLGAMLSALGARGINELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP--LEEGYLEKNFMCV--RRDYFG 347
           VE G  +  S +  R VD +++Y +  ++G              L+     V    +  G
Sbjct: 298 VEAGHKLNGSLLRERCVDELLVYLAPSLLGADAAGMFDLAAPASLDARTRLVFHHIERIG 357

Query: 348 SDVCL 352
            D+ +
Sbjct: 358 DDLRI 362


>gi|78046354|ref|YP_362529.1| riboflavin biosynthesis protein RibD
           (diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-[5-phosphoribosylamino]uracil
           reductase) [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78034784|emb|CAJ22429.1| riboflavin biosynthesis protein RibD
           (Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-[5-phosphoribosylamino]uracil
           reductase) [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 369

 Score =  329 bits (843), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 120/359 (33%), Positives = 187/359 (52%), Gaps = 8/359 (2%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             S+ D R+M+ ALR +      T  NP V C+IV+DG+ +G G     G PHAEV AL 
Sbjct: 7   TASADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALR 66

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AGE ARGATAYVTLEPC+HYGR+PPCA  +I+ G+ RVV  + DP  +V+G G   L +
Sbjct: 67  AAGELARGATAYVTLEPCAHYGRTPPCALALIDAGVARVVAAMADPFPQVNGGGFALLRE 126

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI ++  +M ++ +     +L+R    R  + +K+  S D    +A   S  ITG  ++
Sbjct: 127 AGIEVLSGVMHAQARTLNQGFLSRVERGRPWLRVKLGTSLDGRTALASGESKWITGSHAR 186

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKT 239
                 RA++ AIL G GTV+ADDP +T RL   +    P+R++LD   +      I + 
Sbjct: 187 ADGQRWRARAGAILTGAGTVMADDPSMTVRLGEDMPVVPPLRVVLDAGLRTLACRNIRQG 246

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
              AP + +   +    +L   +     +     DL  +L +L  RG+  + VE GA ++
Sbjct: 247 N--APTLYLHGENVAAPSLDDAQFLAMPLQAGRFDLAAVLALLAERGINEVHVEAGAMLS 304

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
            + + + LVD +++Y + +++G+   P      +E          +     G D+ L Y
Sbjct: 305 GALLQAGLVDELLVYMAPVLLGDTARPLVAGLGIETMAQRHALQLLDVRQLGQDLRLRY 363


>gi|260775295|ref|ZP_05884192.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608476|gb|EEX34641.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 368

 Score =  329 bits (843), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 120/374 (32%), Positives = 181/374 (48%), Gaps = 30/374 (8%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            +  D + MS A+  ++  +  T+ NP+V C+I  D  ++G G     G PHAEV AL  
Sbjct: 4   FTPQDYQMMSRAIELAKGGIYTTAPNPNVGCVITLDDDIVGEGFHYRAGEPHAEVHALRM 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+++ GATAYVTLEPCSHYGR+PPCA+ +I+  + +V+  ++DP+ +V+GRG++ L   
Sbjct: 64  AGDKSVGATAYVTLEPCSHYGRTPPCAEGLIKAKVAKVICAMEDPNPQVAGRGIKMLCDA 123

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++ES+      A++ R       + LK+A S D    ++   S  IT   ++ 
Sbjct: 124 GIEVQVGLLESDAMALNSAFIKRMKTGMPFVQLKMAASFDGQTALSNGQSQWITSPQARQ 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V   RAQ+ AIL    TV+ D+  L  R   L E             P+R++LD   +L
Sbjct: 184 DVQNYRAQAGAILSTSKTVIEDNASLNVRWYELPESVQAKLPESEVRQPVRVVLDRQQQL 243

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-RGVTS 289
           S + K   T     V+    +  P+L  +           +  DLK     LV    +  
Sbjct: 244 SSELKFYSTDGERIVVSAQGDVAPLLNDS-----------EQIDLKSTFANLVSHHNINH 292

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD----- 344
           L VE GA +A S I   LVD +ILY +  ++G  G         LE     +  D     
Sbjct: 293 LWVEAGATLASSLIKEGLVDELILYLAPKIMGSDGR-GLFGALGLESMAEVIELDIQDIR 351

Query: 345 YFGSDVCLEYIGKN 358
             G D+ L    KN
Sbjct: 352 QVGQDIRLVARLKN 365


>gi|163750014|ref|ZP_02157258.1| riboflavin biosynthesis protein RibD [Shewanella benthica KT99]
 gi|161330288|gb|EDQ01269.1| riboflavin biosynthesis protein RibD [Shewanella benthica KT99]
          Length = 380

 Score =  329 bits (843), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 190/377 (50%), Gaps = 31/377 (8%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D  FMS A++ +R  +  T  NP V C+I  D  ++G G     G PHAEV AL  
Sbjct: 2   WSIEDTEFMSRAIKLARRGLYTTRPNPCVGCVITLDDQILGEGFHIRAGGPHAEVHALAM 61

Query: 63  AGEEA------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           A + A      +GATAYVTLEPCSHYGR+PPCA+ +I+ GI RVVV V+DP+ RVSGRG+
Sbjct: 62  ATQRADGLADLKGATAYVTLEPCSHYGRTPPCAEALIKHGISRVVVAVEDPNPRVSGRGI 121

Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
             L   GI +   ++  E       ++ R       +T+K+A S D    ++   S  IT
Sbjct: 122 NMLKDAGIKVDVGLLGDEAAQINPGFMKRMQSALPWVTVKLAASLDGKTALSNGASKWIT 181

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILD 225
           G  S+  V  LRA+S A++ GI TVL DDP L  R + L              P+R+ILD
Sbjct: 182 GPESRRDVQRLRARSCALVTGIETVLLDDPSLNVRHSELGLLAQQVDADSLLQPLRVILD 241

Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLT 280
              +L+  +K+   A+ +P+++V+  D P        ++++ +          +L  L +
Sbjct: 242 SRARLTSSAKLF--AITSPILLVSCVDYPQAEQDTWPEHVSGLTLASDNDGRVELTALFS 299

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLE 335
            L      S+L+E GA +A S I+    D +ILY++  ++G  G     +P   +   + 
Sbjct: 300 HLGKT-CNSVLIEAGATLAGSVISHNHADELILYQAMKLLGANGRNLISLPDYTDMADIP 358

Query: 336 KNFMCVRRDYFGSDVCL 352
                +     G D  L
Sbjct: 359 S-VELIDERKLGDDTRL 374


>gi|316934111|ref|YP_004109093.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris
           DX-1]
 gi|315601825|gb|ADU44360.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris
           DX-1]
          Length = 389

 Score =  329 bits (843), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 157/360 (43%), Positives = 207/360 (57%), Gaps = 12/360 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM  AL   R   G T TNP+V  ++VKDG+++GRG T  GG PHAEV+AL  AGE 
Sbjct: 27  DQRFMQLALALGRRGQGRTGTNPAVGAVLVKDGVIVGRGWTQDGGRPHAEVEALRRAGEA 86

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGAT YVTLEPCSH+GRSPPCA  I+  GI RVV  ++DP+  V+G+G   L   GI +
Sbjct: 87  ARGATLYVTLEPCSHHGRSPPCADAIVAAGIARVVSAIEDPNPLVAGQGHAKLRAAGIAV 146

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +   E       +L R   +R H+TLK+AVS D  I  AG   V ITG  +  + HL
Sbjct: 147 EIGICADEATHDHAGHLCRISARRPHVTLKLAVSADGKIAAAGHKQVAITGEAANARTHL 206

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRA+SDA+LVGIGTVLADDPELTCRL G+   SP+R++LD   ++   SK++ +A    +
Sbjct: 207 LRARSDAVLVGIGTVLADDPELTCRLPGMAAQSPIRVVLDRSLRIPSASKLVHSARTTSL 266

Query: 246 II-VTENDDPVLALAFRKKNINIIY------CDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
            +  +E  D   A         +++          DL  +L  L  +GVT LLVEGGA V
Sbjct: 267 WLMASEIADAATAARLGAAGAEVVHVADCAAAPGLDLPAVLHALSDKGVTRLLVEGGARV 326

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           A +F+  R  D I L+RS+  IG  G+ +    PL       ++     +  GSD    Y
Sbjct: 327 AAAFVTQRRADEIRLWRSETTIGPDGVDALAGLPLAAITDSPHWRVRSSERVGSDTLTIY 386


>gi|91202314|emb|CAJ75374.1| strongly similar to riboflavin biosynthesis protein RibD
           [Candidatus Kuenenia stuttgartiensis]
          Length = 367

 Score =  328 bits (841), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 129/365 (35%), Positives = 189/365 (51%), Gaps = 14/365 (3%)

Query: 1   MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP +   D  +M+ AL  +    G+   NP V  +IVK+  ++G+G     G  HAE+ A
Sbjct: 1   MPLMKEHDEEYMTLALELAEKGRGMVEPNPMVGAVIVKNNEIVGKGYHKNYGGAHAEIHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + E G   +GAT YVT+EPC+HYG++ PCA  II  GI +VV    DP+   SG+G++ L
Sbjct: 61  INEGGVNCKGATLYVTMEPCAHYGKTAPCAAAIILAGIAKVVTTCVDPNPVTSGKGVKQL 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   +ME + K     +     +   +I +K A+S D  I      S  IT   
Sbjct: 121 QAAGITVRMGVMEDQAKKLNAPFFKLIQKGMPYIIVKWAMSIDGKIATVTGDSKWITSEE 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           S+  VH LR+Q D ++VGI TVL DDP LTCR NG    +P RII+D    L L S +I+
Sbjct: 181 SRRYVHTLRSQVDGVMVGINTVLKDDPLLTCRFNG--GRNPKRIIIDSRASLPLTSALIR 238

Query: 239 TALLAPVIIVTENDDPVLALA-FRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVE 293
           T   + +II    + P   +   R+    +I      D  DLK+L   L    +T+++VE
Sbjct: 239 TVQQSEIIIAVSKNAPQKKVEILRQSGCRVIETNGDYDHVDLKELFLKLGSMRLTNIMVE 298

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGS 348
           GG+ +  S +  RL D II++ + I+IG  G  SP+    +E          VR   F  
Sbjct: 299 GGSKIITSLLKERLADKIIVFIAPIIIGGCGDTSPVLGKGVENVCDALKIREVRHYRFSD 358

Query: 349 DVCLE 353
           D+ +E
Sbjct: 359 DIVVE 363


>gi|294141969|ref|YP_003557947.1| riboflavin biosynthesis protein RibD [Shewanella violacea DSS12]
 gi|293328438|dbj|BAJ03169.1| riboflavin biosynthesis protein RibD [Shewanella violacea DSS12]
          Length = 379

 Score =  328 bits (841), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 126/376 (33%), Positives = 192/376 (51%), Gaps = 30/376 (7%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D  FMS A++ +R  +  T  NP V C+I  D  ++G G     G PHAEV AL  
Sbjct: 2   WSIEDTEFMSRAIKLARRGLYTTRPNPCVGCVITLDDQILGEGFHIQAGGPHAEVHALAM 61

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A + A     +GATAYVTLEPCSHYGR+PPCA+ +I+ GI RVVV V+DP+ +VSGRG++
Sbjct: 62  ATKRASQAALKGATAYVTLEPCSHYGRTPPCAEALIKHGISRVVVAVEDPNPQVSGRGIK 121

Query: 118 WLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
            L   GI VD  ++  E       ++ R       +T+K+A S D    ++   S  ITG
Sbjct: 122 MLRDAGIEVDVGLLSDEAAGINPGFMKRMERGLPWVTVKLASSLDGKTALSNGASKWITG 181

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDP 226
             S+  V  LRA+++A++ GI TVL DDP L  R + L            H P+R++LD 
Sbjct: 182 PESRRDVQRLRARNEALVTGIETVLLDDPCLNVRHSELGLLSEQVDADSLHQPLRVVLDS 241

Query: 227 HFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTI 281
             +L+  +K+    + +P+++V+  D P        ++++ +          +L  L   
Sbjct: 242 RARLTSTAKLFT--VTSPILLVSCIDYPQAEKDTWPQHVSGLILASDNDGRVELTALFAH 299

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEK 336
           L      S+L+E GA +A S I+    D +ILY++  ++G  G     +P   +   +  
Sbjct: 300 LGKT-YNSVLIEAGATLAGSVISQNHADELILYQAMKILGSNGRNLISLPDYTDMADIPS 358

Query: 337 NFMCVRRDYFGSDVCL 352
               +     G D  L
Sbjct: 359 -VELIDERKLGGDTRL 373


>gi|295112158|emb|CBL28908.1| riboflavin biosynthesis protein RibD [Synergistetes bacterium SGP1]
          Length = 371

 Score =  328 bits (841), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 130/372 (34%), Positives = 193/372 (51%), Gaps = 25/372 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D  +M  AL  +   +G TS NP V C++V+DG ++G G     G  HAEV AL++A   
Sbjct: 11  DEYYMRRALSLALRGMGRTSPNPMVGCVLVRDGRILGEGWHRRCGEDHAEVAALKDAERR 70

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARGA  YVTLEPC H+GR+PPCAQ ++  G+ RVV    DP+ RV+  GL  L + G
Sbjct: 71  GETARGAEVYVTLEPCCHFGRTPPCAQRLVREGVSRVVAGTADPNPRVNSGGLAVLREAG 130

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + +    +E E +     ++  Q   R  +TLK A   D  + +    S  ITG  ++  
Sbjct: 131 VEVSAPCLEEEARRVNKGFIRVQTLGRPWVTLKAASGLDGRMALTDGDSRWITGPEARQW 190

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H +RA  DAILVG+ TVL DDPELT R    +  SP+R+ILD H +    ++ ++    
Sbjct: 191 AHGMRASHDAILVGVSTVLKDDPELTVR--HTEGKSPLRVILDSHLRTPTSARALRGGC- 247

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298
              +I+T + +   A A +     ++    R    DL+  L  L   GV +L+VEGG  V
Sbjct: 248 ---LILTISQEAERARALQAAGARVVPLPSREGRVDLEVALAFLAREGVLTLMVEGGPRV 304

Query: 299 AHSFINSRLVDSIILYRSQIVI------GEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
             + +   L DS+ L+ +  V+      GEG  P+ + E +   N   V     G ++ +
Sbjct: 305 LTALMEGHLADSLSLFVAPRVLGEGIGMGEGFSPASVAESF---NLKDVTSRPVGDNLLV 361

Query: 353 EYIGKNLCLQEL 364
           E  G+  C  +L
Sbjct: 362 E--GRFSCSPDL 371


>gi|157413823|ref|YP_001484689.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. MIT 9215]
 gi|157388398|gb|ABV51103.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. MIT 9215]
          Length = 364

 Score =  328 bits (841), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 104/358 (29%), Positives = 173/358 (48%), Gaps = 9/358 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
            ++M  A+  +      TS NP V  +I+ K+G +I  G     G PHAE  A     ++
Sbjct: 9   KKWMKRAIFLASLGKNTTSPNPRVGAVILDKNGKLISEGFHFKAGMPHAEAMAFNNLKKD 68

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARG   YV LEPC H+GR+PPC   +I  GI+R  + ++DPDVRV+G+G++ L + GI V
Sbjct: 69  ARGGAIYVNLEPCCHHGRTPPCVDKVISSGIKRAYISIEDPDVRVAGKGIKKLEEAGIQV 128

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              + + E      A++ R   K++    K A+S D  I +    S  IT   S+  VH 
Sbjct: 129 HLGLCKKESLDLNKAFIYRNTTKKAFGVFKWAMSIDGRIALKNGKSKWITNEESRALVHS 188

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            RA+ DAI++G  T+  D+P LT R  GL+   P+R++      L   S +        +
Sbjct: 189 FRAEFDAIIIGGNTLRRDNPLLTTR--GLKNPEPLRVVFTKSLDLPTKSNLWDCNKAKTL 246

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           +I   +      L    K++ +      + + +  IL  RG  ++L E G  +A + I +
Sbjct: 247 VIYDSSTANENYLTRIPKSVEVEKVSSDNPELISKILAKRGCNNVLWECGPRLATAAIKT 306

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLEYIGKN 358
             +  II + +  ++G     +PL +    +    ++         G D+C++ + KN
Sbjct: 307 NCIQEIITFIAPKILGGENSMNPLGDFEFGEMHEIIKLSKSQLSLIGDDICVKSLFKN 364


>gi|84394363|ref|ZP_00993084.1| Pyrimidine reductase, riboflavin biosynthesis [Vibrio splendidus
           12B01]
 gi|84375022|gb|EAP91948.1| Pyrimidine reductase, riboflavin biosynthesis [Vibrio splendidus
           12B01]
          Length = 364

 Score =  328 bits (841), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 112/360 (31%), Positives = 177/360 (49%), Gaps = 27/360 (7%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
            MS A++ ++  +  T+ NP+V C+IV+ DG ++G G  A  G PHAEV A+  AG++A+
Sbjct: 1   MMSRAIQLAKRGIYTTAPNPNVGCVIVQTDGQIVGEGFHAKAGEPHAEVHAMRMAGDKAK 60

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GATAYVTLEPCSHYGR+PPCA+ +I+  + +V+  + DP+ +V+GRG++ L   GI +  
Sbjct: 61  GATAYVTLEPCSHYGRTPPCAEGLIKAQVAKVICAMQDPNPKVAGRGIKMLRDAGIEVEI 120

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++E +      A++ R       + LK+A S D    +    S  IT   ++  V   R
Sbjct: 121 GLLEQDALDLNPAFIKRMQTGMPFVQLKMAASLDGQTALENGQSQWITSPEARRDVQNYR 180

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKI 236
           A+S A+L    TV+ D+  L  R   L               P+R+ILD   +L  + K+
Sbjct: 181 AKSGAVLSTSQTVIDDNASLNVRWAELPSSIKDHYAEDELRQPIRVILDRQNQLRPELKL 240

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
            +T     V+ V E    +         +        DL  L+  L    +  + VE GA
Sbjct: 241 FQTPTS--VLRVAEASADIE--------VGTTEAGQLDLHDLMRQLPANHIDHIWVEAGA 290

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCL 352
            +A S I ++LVD +ILY +  ++G  G       G        +         G D+ +
Sbjct: 291 TLAKSLIEAQLVDELILYLAPKLMGSDGRGLMGALGLTSMSDVIDLEIKDVRQVGVDIRI 350


>gi|254459689|ref|ZP_05073105.1| riboflavin biosynthesis protein RibD [Rhodobacterales bacterium
           HTCC2083]
 gi|206676278|gb|EDZ40765.1| riboflavin biosynthesis protein RibD [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 364

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 126/354 (35%), Positives = 190/354 (53%), Gaps = 11/354 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  +R  +G T  NP+V C+IV  G ++GRG T  GG PHAEV AL +AG+ 
Sbjct: 5   DQAYMKMALSLARRGLGRTWPNPAVGCVIVNAGRIVGRGWTQVGGRPHAEVVALVQAGKR 64

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GATAYVTLEPC+H+G++PPC++ +IE GI RVV  ++D D RVSGRG   L   G++V
Sbjct: 65  ANGATAYVTLEPCAHHGQTPPCSEALIEAGIARVVAAMEDSDPRVSGRGFAQLRGAGVVV 124

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  +   +       +  +    R  +TLK+A+S D  I      S  ITG  ++  VH 
Sbjct: 125 ETGICAKDAAESNAGFFLKTEVGRPFVTLKLALSLDGRIATLTGDSQWITGSEARRAVHA 184

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +RA  DA+L+G GT   DDP LT R  G+  H P+R++     K+ L+S + KTA   PV
Sbjct: 185 MRATHDAVLIGAGTARGDDPSLTVRGLGI-GHQPVRVVAAQSLKIDLESSLAKTARDVPV 243

Query: 246 IIVTENDDPVL-ALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
            +   +D       A+      +I C+      +  +++  L  +G+T +  EGG  +A 
Sbjct: 244 WLCHGSDVKDEDRAAWIDLGAELIACETDASGLEPHQMMQALGHKGLTRVFCEGGGHLAA 303

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY----LEKNFMCVRRDYFGSDV 350
           S + + LVD ++++ + + IG  G+      G+        F        G D+
Sbjct: 304 SLLRADLVDRLVIHSAGVAIGGDGLAGLASMGHDVLADAARFRLASHRQLGVDI 357


>gi|254236945|ref|ZP_04930268.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
           C3719]
 gi|126168876|gb|EAZ54387.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
           C3719]
          Length = 373

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 124/365 (33%), Positives = 179/365 (49%), Gaps = 22/365 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ D  +M+ AL  +R  +  T  NP V C++VKDG V+G G     G PHAEV AL +
Sbjct: 1   MNAADPLYMARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+GRGL  L Q 
Sbjct: 61  AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E+E +     ++ R       + +K+A+S D    MA   S  ITG  +++
Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARS 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPEL--TCRLNG--------LQEHSPMRIILDPHFKLS 231
            V  LRA+S  +L    T+LADD  L  T R  G             P+R+++D   ++ 
Sbjct: 181 AVQRLRARSSVVLSRADTLLADDARLKRTARRTGPNAELTALAAARQPLRVLVDGRLRVP 240

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGV 287
           L+S   +     P ++ T          F+     ++         DL KLL  L  RG 
Sbjct: 241 LESAFYQ---AGPALVATCAAASARER-FQDAGHELLALPSAEGHVDLHKLLLELAARGA 296

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRD 344
             +LVE G  +A +F    LVD   L+ +   +G    P    PL               
Sbjct: 297 NEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAQLRIDDIR 356

Query: 345 YFGSD 349
             G D
Sbjct: 357 AVGDD 361


>gi|188996871|ref|YP_001931122.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931938|gb|ACD66568.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 371

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 118/327 (36%), Positives = 168/327 (51%), Gaps = 10/327 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65
             +M  AL  ++   GLT  NP+V  +IVKDG +IG+G     G PHAE +A+++A E  
Sbjct: 8   ESYMKIALDLAKIRKGLTHPNPTVGAVIVKDGKIIGKGYHTKAGMPHAEREAIKDAKEKG 67

Query: 66  -EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            + +G+T +VTLEPC HYGR+PPC   IIE GI  +V+ V D +  V G+G+  L   GI
Sbjct: 68  YDLKGSTMFVTLEPCCHYGRTPPCTNAIIEEGISEIVIGVLDQNPVVKGQGVNILKSHGI 127

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            ++  ++E E +     + T   EKR  + LK+A S D  I      S  IT   S+   
Sbjct: 128 KVITGVLEKECEKINEDFFTYIKEKRPFVHLKVAQSFDGKIATKTGDSKWITSEKSRQFA 187

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H LR ++ AILVG  T L D+P LT R     E  P+RI++D   K+     I       
Sbjct: 188 HQLRKEASAILVGTNTALKDNPALTVRHVE-TEKQPVRILIDKRLKVPPTYNIYNNEAKT 246

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAV 298
            VI         L     K+N+ I++ D  +     +  +L  L  R +  LLVEGG  V
Sbjct: 247 IVITSKLASQENLKRLSEKENVEIVFLDLDENENFKIDDILKTLYAREIVHLLVEGGRGV 306

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGI 325
               I  R  D I ++ + I+IG+ GI
Sbjct: 307 ITDLIKERKFDKISIFTAPILIGDDGI 333


>gi|296269350|ref|YP_003651982.1| riboflavin biosynthesis protein RibD [Thermobispora bispora DSM
           43833]
 gi|296092137|gb|ADG88089.1| riboflavin biosynthesis protein RibD [Thermobispora bispora DSM
           43833]
          Length = 362

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 120/360 (33%), Positives = 179/360 (49%), Gaps = 10/360 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
           ++S D  +M  A+  +    G TS NP V C++V   G ++G G  AY G PHAE+ AL 
Sbjct: 1   MTSRDDHYMRRAIELAARGHGGTSPNPVVGCVVVDPTGEIVGEGFHAYAGGPHAEIVALR 60

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +AGE ARGATAYVTLEPC H GR+ PC   +++ G+ RVVV V DP+   +G     L  
Sbjct: 61  QAGERARGATAYVTLEPCDHTGRTGPCTAALLQAGVARVVVAVPDPNPVAAGGAETLLRH 120

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
              +   ++ +E +     +LT    +R  +T K A + D     A   S  IT   ++ 
Sbjct: 121 GVTVDVGVLAAEAERVNEEWLTYMRARRPFVTWKFAATIDGRSAAADGTSKWITSPEARA 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP-MRIILDPHFKLSLDSKIIKTA 240
            VH LRA SDAI+ GIGTVLADDP LT R    +   P +R+++D   +    ++++   
Sbjct: 181 DVHRLRAASDAIVAGIGTVLADDPRLTVRTPEPRRTRPVLRVVVDSGARTPAGARVLDGE 240

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCD-CRDLKKLLTILVGRGVTSLLVEGGAAVA 299
             AP ++   +D            + +   D   DL+ LL  L  R V S+L+EGG  +A
Sbjct: 241 --APTLVAVADDAD--PPPHLGDAVRLPRADGGLDLRALLAELHRRQVVSVLLEGGPTLA 296

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGI---PSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
            SF+   LVD ++ Y +  ++G G     P+ +                 G D+ +    
Sbjct: 297 GSFLREGLVDRVVGYLAPALLGAGSAALGPAGVTTIAERHRLEFEEVTRIGPDLKVVLRP 356


>gi|257126309|ref|YP_003164423.1| riboflavin biosynthesis protein RibD [Leptotrichia buccalis
           C-1013-b]
 gi|257050248|gb|ACV39432.1| riboflavin biosynthesis protein RibD [Leptotrichia buccalis
           C-1013-b]
          Length = 371

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 116/369 (31%), Positives = 197/369 (53%), Gaps = 18/369 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D ++M  A+  ++      + NP V  ++V+ G VIG G   Y G PHAEV AL+EA 
Sbjct: 4   NIDEKYMRMAIELAKKGARAVNPNPMVGAVVVQAGKVIGTGYHKYFGGPHAEVYALDEAS 63

Query: 65  EEARG---ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           + ++    AT YVTLEPCSHYG++PPCA+ I++ G++R V+   DP+ +V+G+G+Q L  
Sbjct: 64  KNSKDLSNATIYVTLEPCSHYGKTPPCAEKIVKLGLKRCVIGSSDPNPKVAGKGVQILKN 123

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI + + +++ E       +    + K  ++ LK A++ D  I      S  IT   ++
Sbjct: 124 AGIGVAENVLKEECDKLNQVFFKYILTKLPYLFLKCAITLDGKIATKTGNSKWITNEAAR 183

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            +V   R +   I+VGI TVLAD+P LT R+      +P RII+DPH K      IIK  
Sbjct: 184 EKVQFYRNKFMGIMVGINTVLADNPSLTARIE--NGVNPYRIIIDPHLKTEKIHNIIKEN 241

Query: 241 LLAPVIIVTE--NDDPVLALAFRKKN-INIIYCDC--RDLKKLLTILVGRGVTSLLVEGG 295
           +    IIVT   N +    L F + N +  ++ +      K++L  +   G+ S+L+EGG
Sbjct: 242 IDEKTIIVTSEKNKNSEKQLDFSENNKVKFVFLNGTKFSFKEILEKIGTLGIDSILLEGG 301

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN------FMCVRRDYFGSD 349
             +        ++D+  ++ +  ++G+    S +  G+ +KN         V+ + +G +
Sbjct: 302 QLLISQAFEEDVIDAGEIFIANKILGDTEGKSFIA-GFDKKNMDESIILKNVKYNIYGEN 360

Query: 350 VCLEYIGKN 358
           V +E++ K+
Sbjct: 361 VGMEFLQKS 369


>gi|86147437|ref|ZP_01065749.1| Pyrimidine reductase, riboflavin biosynthesis [Vibrio sp. MED222]
 gi|85834730|gb|EAQ52876.1| Pyrimidine reductase, riboflavin biosynthesis [Vibrio sp. MED222]
          Length = 364

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 113/360 (31%), Positives = 177/360 (49%), Gaps = 27/360 (7%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
            MS A++ ++  +  T+ NP+V C+IV+ DG ++G G  A  G PHAEV A+  AG++A+
Sbjct: 1   MMSRAIQLAKRGIYTTAPNPNVGCVIVQTDGQIVGEGFHAKAGEPHAEVHAMRMAGDKAK 60

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GATAYVTLEPCSHYGR+PPCA+ +I+  + +V+  + DP+ +V+GRG++ L   GI +  
Sbjct: 61  GATAYVTLEPCSHYGRTPPCAEGLIKAQVAKVICAMQDPNPKVAGRGIKMLRDAGIDVEI 120

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++E +      A++ R       + LK+A S D    +    S  IT   ++  V   R
Sbjct: 121 GLLEQDALDLNPAFIKRMQTGMPFVQLKMAASLDGQTALENGQSQWITSPEARRDVQNYR 180

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKI 236
           A+S A+L    TV+ D+  L  R   L               P+R+ILD   +L  + K+
Sbjct: 181 AKSGAVLSTSQTVIDDNASLNVRWAELPSSIKDHYAEDELRQPIRVILDRQNQLRPELKL 240

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
            +T     V+ V E    +         +        DL  L+  L    +  + VE GA
Sbjct: 241 FQTPTS--VLRVAEASADIE--------VGTTEVGQLDLHDLMRQLPANHIDHIWVEAGA 290

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCL 352
            +A S I +RLVD +ILY +  ++G  G       G        +         G D+ +
Sbjct: 291 TLAKSLIEARLVDELILYLAPKLMGSDGRGLMGALGLTSMSDVIDLEIKDVRQVGVDIRI 350


>gi|67924763|ref|ZP_00518165.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67853388|gb|EAM48745.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 348

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 104/335 (31%), Positives = 172/335 (51%), Gaps = 10/335 (2%)

Query: 26  STNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRS 85
           + NP V  ++VK+G +IG G     G PHAEV AL +AGE A G T YV LEPC+HYGR+
Sbjct: 8   NPNPMVGAVVVKNGQIIGEGFHPKPGDPHAEVFALRDAGENAAGGTVYVNLEPCNHYGRT 67

Query: 86  PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTR 144
           PPC + +I   + +VVV + DP+  VSG+GL  L   GI ++  + E+  +    A+  R
Sbjct: 68  PPCTEALIAARVAKVVVGMVDPNPLVSGKGLAKLEDAGIEVIVGVEETACRRLNEAFCHR 127

Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
            +  +    LK A++ D  I  +   S  +TG  S+  VH  RA  DA++VG  TV  D+
Sbjct: 128 ILHHQCFGILKYAMTLDGKIATSTGHSAWVTGTTSRQLVHQTRAGCDAVIVGGNTVRRDN 187

Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE-NDDPVLALAFRKK 263
           P LT  ++     +P+R+++  +  L  ++ +     +AP ++ TE   +P L    R K
Sbjct: 188 PHLT--IHQATGRNPLRVVMSRNLHLPQEANLWDV-QVAPTLVFTEWGKNPSLQAELRSK 244

Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            + ++        +++ +L  R ++S+L E G  +    I   ++  ++ + +  +IG  
Sbjct: 245 GVEVLELSPLSPAQVMEVLYERQLSSILWECGGVLGAQAIREGVIQKVMAFMAPKIIGGV 304

Query: 324 GIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
              SP+ +  LEK         V       D+ +E
Sbjct: 305 SAASPVGDLGLEKMSDALLLESVILRQVDQDILVE 339


>gi|189346359|ref|YP_001942888.1| riboflavin biosynthesis protein RibD [Chlorobium limicola DSM 245]
 gi|189340506|gb|ACD89909.1| riboflavin biosynthesis protein RibD [Chlorobium limicola DSM 245]
          Length = 372

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 119/358 (33%), Positives = 177/358 (49%), Gaps = 17/358 (4%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--GE 65
             +M      +    G  S NP V C+IV  G VIG G     G PHAEV A+      E
Sbjct: 13  EHYMQRCHELALMGSGAVSPNPMVGCVIVSGGQVIGEGFHRQYGGPHAEVNAVASVADRE 72

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
             R AT YV LEPCSH+G++PPC+  I+E GI RVV+   DP ++V+G+G+  L   G+ 
Sbjct: 73  RLRNATLYVNLEPCSHFGKTPPCSDMIVEMGIPRVVIGCRDPHLKVAGKGIAKLLAGGVE 132

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +++ ++E+E +    A++T   + R  + LK+A S D  I      S  ITG  ++ +VH
Sbjct: 133 VIEGVLETESERLNEAFITVHRKGRPFVALKLAQSLDGKIATVSGASKWITGEEARTEVH 192

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR   DA+L G  TV+ADD  LT R       +P+R++LD    + + + I  T     
Sbjct: 193 RLRCSFDAVLTGAATVIADDSRLTVR--HCAGRNPIRVVLDSRLSIPIGAGIFDTEAETV 250

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300
           V       D   A    KK + +     R    DL  +L  L  R + S+LVEGG  +  
Sbjct: 251 VFTALSMQDSQKARQLAKKGVAVFGVAERECGLDLAAVLERLHERRILSVLVEGGGRLGS 310

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSP------LEEGYLEKNFMCVRRDYFGSDVCL 352
           SF+   L D + ++ + ++ G  G+ +       L E  +  +F    R  FG D+ L
Sbjct: 311 SFVRMELFDKLYMFIAPVLFGGDGLSAFAPIGITLPEQAIRLDFEPPSR--FGRDLLL 366


>gi|118595047|ref|ZP_01552394.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
           C-terminal [Methylophilales bacterium HTCC2181]
 gi|118440825|gb|EAV47452.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
           C-terminal [Methylophilales bacterium HTCC2181]
          Length = 363

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 110/357 (30%), Positives = 177/357 (49%), Gaps = 13/357 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
                FM+ A+  ++  +G T  NP V  + VKD +VIG G  A  G  HAEV AL+EAG
Sbjct: 4   DLHTEFMALAISLAKQGLGKTQPNPVVGAIAVKDSVVIGSGFHAKAGKDHAEVLALKEAG 63

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
             A+G+T Y+TLEPC H G++PPC   I+  G+ +VVV   DP+  V+G+GL  L   GI
Sbjct: 64  AGAKGSTLYITLEPCGHVGKTPPCVDLILSSGVTKVVVASSDPNPLVNGKGLAVLRSHGI 123

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +V+ ++  + +     + +R  +   ++  KIA S D    +A   S  IT   S+  V
Sbjct: 124 EVVEDVLRLQAEALNTGFFSRMTKNLPYVRSKIASSIDGRTALANGDSQWITSEASRQDV 183

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
              RA++ AIL G+GT+  D+P L  R     +  P R+I D H  +  +++I+K     
Sbjct: 184 QQWRARACAILTGVGTIHKDNPRLNVRNLDESD-QPFRVIADTHLSIDPEAQILKQKN-- 240

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
            +I++  ND    A     + + +I      +  DL+ L+  L       +LVE G  + 
Sbjct: 241 -IILMFCNDPHNKASQLEAQGVRLIPITSKDNRIDLEVLMQQLASLAFNEVLVESGPTLN 299

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
              +   LVD +I+Y++ I++G    P      +     +     +    FG D+ +
Sbjct: 300 GQLLELGLVDELIIYQAPIIMGGNANPLFHHPIMTSMEQKIRLKQIDIRQFGEDLRM 356


>gi|37527755|ref|NP_931100.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36787191|emb|CAE16271.1| riboflavin biosynthesis protein [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (riboflavin-specific deaminase);
           5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
           reductase)] [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 369

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 125/372 (33%), Positives = 185/372 (49%), Gaps = 26/372 (6%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D ++M+ AL  +R     TS NP+V C+IV DG ++G G     G PHAEV AL+ AG
Sbjct: 2   NNDKKYMARALELARQGRFTTSPNPNVGCVIVHDGQIVGEGFHLRSGEPHAEVYALQIAG 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           ++A+GAT YVTLEPCSH+G++PPCA  +I  G+ RVV  + DP+ +V+GRGL  L Q GI
Sbjct: 62  DKAKGATVYVTLEPCSHHGKTPPCADALIAAGVSRVVAAMQDPNPQVAGRGLYKLQQAGI 121

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   +M  E +     +L R      +I LK+A S D    +A   S  IT   ++  V
Sbjct: 122 AVEHGLMMEEAESLNRGFLKRMRTGFPYIQLKMATSLDGRTALASGESKWITSPQARCDV 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLSL 232
              RAQ  AIL    TVLADDP LT R + L               P+R+I+D   ++S 
Sbjct: 182 QKFRAQCSAILSSSSTVLADDPHLTVRWSELDAEIQAVYPEENLCQPVRVIVDSQNRVSP 241

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVT 288
             ++I+       +  T+ D+  L+     +N+  I         DL  L+  L  R + 
Sbjct: 242 QHQVIQQPGYC-WLARTKVDEHDLS-----ENVEQILLPAHGIGVDLVSLMMQLGKRQIN 295

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRD 344
           ++  E GA +A + +   LVD ++LY +  V+G+          L+       F      
Sbjct: 296 TVWTECGALLAGALLTLGLVDELVLYVAPKVLGDTARGLFTIPELKNLAEAPEFDIFDVQ 355

Query: 345 YFGSDVCLEYIG 356
             G D+ L    
Sbjct: 356 QVGPDLRLHLRP 367


>gi|15834728|ref|NP_296487.1| riboflavin-specific deaminase [Chlamydia muridarum Nigg]
 gi|7190138|gb|AAF38983.1| riboflavin-specific deaminase [Chlamydia muridarum Nigg]
          Length = 396

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 115/369 (31%), Positives = 173/369 (46%), Gaps = 11/369 (2%)

Query: 1   MPVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           M VSS     FM  A+            NP V C+IVK+G +IGRG     G PHAEV A
Sbjct: 26  MEVSSEQQLFFMREAVALGERGRIFAPPNPWVGCVIVKNGCIIGRGWHKGIGSPHAEVCA 85

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
            ++      GA  YVTLEPC H+GR+PPC   +I+  +  V + + DPD RV  RG+  L
Sbjct: 86  FQDQTSSLVGADVYVTLEPCCHFGRTPPCVDLLIKSKVSSVYIALLDPDPRVCKRGVARL 145

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            + GI +   +   E K  L  YL ++      + +K A S D         S  I+G  
Sbjct: 146 KEAGISVYVGIGHEEAKASLQPYLHQRETGLPWVVMKTAASLDGQTSDRRGISQWISGEQ 205

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKI 236
           ++  V  LRA+S A++VG  TV  D+P L+ R+    L E  P+R+++D    + LD+++
Sbjct: 206 ARLDVGRLRAESQAVIVGSRTVCLDNPRLSARMPSGDLYERQPLRVVVDSRGSVPLDARV 265

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEG 294
                   ++  TE            + + +        DLK+LL  L  +G   +LVEG
Sbjct: 266 WNPDSGNVLLATTEQCSKEHIQKLEDRGVEVWKSSPQQVDLKRLLQYLAEKGCLQVLVEG 325

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY---FGSDV- 350
           GA +  +F    LV++ ++Y     +G+ G P   +      N   V+       G  V 
Sbjct: 326 GARLHSAFWREHLVNAGVIYWGPKFLGDQGSPMLRDLQLCLDNAEHVKITKTFLVGDSVK 385

Query: 351 -CLEYIGKN 358
            C E +G+ 
Sbjct: 386 TCFECVGRE 394


>gi|257093103|ref|YP_003166744.1| riboflavin biosynthesis protein RibD [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045627|gb|ACV34815.1| riboflavin biosynthesis protein RibD [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 365

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 117/362 (32%), Positives = 183/362 (50%), Gaps = 15/362 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S+ D  FM+ ALR +   +  T+ NP V C+IV DG V+G G     G  HAEV AL+ 
Sbjct: 2   FSAADHDFMARALRLAERGLYTTTPNPRVGCVIVADGEVVGEGWHVRAGGRHAEVHALQA 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE+A GATAYVTLEPCSH+GR+PPC + ++  G+ RVV  + DP+ +V+G GL  L   
Sbjct: 62  AGEKAAGATAYVTLEPCSHHGRTPPCVEALLAAGVARVVAAMQDPNPQVAGSGLASLQAA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+     ++ +E       ++ R    R  + LK+A S D    +    S  +TG  ++ 
Sbjct: 122 GVRAECGLLAAEAGEINIGFVARMTRCRPWLRLKLAASLDGKTALRNGASQWLTGPAARQ 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNG---LQEHSPMRIILDPHFKLSLDSKIIK 238
             H  RA++ AIL GIGTV  DDP+L  R       +   P+++++D   +LS D+++++
Sbjct: 182 DGHRWRARACAILTGIGTVRHDDPQLNVRGVEGFAGELRQPLKVVVDSRLELSPDARLLR 241

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEG 294
                 V++     D     A  ++   ++         DL  LL  L  RG+  +  E 
Sbjct: 242 DGQ---VLVAAALVDRAKVDALAQRGAEVLLLPGPAGRVDLAALLDELARRGINEVHGEA 298

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
           G A+  S +++ LVD ++LY +  ++G+         PL      +          G D+
Sbjct: 299 GFALGGSLLDAGLVDELLLYLAPCLVGDAARGMFDLPPLASLAGRRRLSIRDLRSVGPDL 358

Query: 351 CL 352
            L
Sbjct: 359 RL 360


>gi|206890490|ref|YP_002249110.1| riboflavin biosynthesis protein RibD [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742428|gb|ACI21485.1| riboflavin biosynthesis protein RibD [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 370

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 121/347 (34%), Positives = 185/347 (53%), Gaps = 15/347 (4%)

Query: 24  LTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY- 82
            TS NP V  +IVK+G +I  G     G PHAE +A+  A E  +GAT YVTLEPC H  
Sbjct: 25  RTSPNPMVGAVIVKNGKIISEGYHKKAGLPHAEAEAIRNANESLKGATLYVTLEPCCHKD 84

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAY 141
            ++PPC   II  GI RVV+ + DP+ +VSG+G++ L+  GI +++ ++E E K     Y
Sbjct: 85  KKTPPCTDAIINSGINRVVIGMRDPNPKVSGKGVEILNNHGIKVIEGVLEEEVKKLNEFY 144

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
           +      R  + LKIA++ D  I      S  IT   S+  VHL+R++ DA+L   GTVL
Sbjct: 145 IKYITTSRPFVILKIAMTLDGKIATPLGESKWITSEKSRKFVHLIRSRVDALLSAYGTVL 204

Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE---NDDPVLAL 258
            D+P  T R+ G    +P+R+I+DP  K+ L+  +        + +V E   ND  +  L
Sbjct: 205 KDNPMFTSRIKG--GKNPLRVIIDPELKIPLNYHVYNPPPN-TIAVVHEKKLNDKNIKHL 261

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
             R   I     +  DL+ L+  L  R +TSL++EGG+++    + S +VD ++++ +  
Sbjct: 262 IHRGIEIVSFSSEKVDLQWLMEELGKRQITSLMIEGGSSLNSYALWSGIVDKLMIFIAPK 321

Query: 319 VIGEGGIPSPLEEGYLEKNF------MCVRRDYFGSDVCLEYIGKNL 359
           +IG G    P   G + KN         ++   FG D+ +E   K L
Sbjct: 322 IIG-GAQSYPSIGGNIYKNLDEAFEIKDLKIRMFGGDIFIEGYLKGL 367


>gi|145219912|ref|YP_001130621.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Prosthecochloris vibrioformis DSM 265]
 gi|145206076|gb|ABP37119.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chlorobium
           phaeovibrioides DSM 265]
          Length = 357

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 121/354 (34%), Positives = 179/354 (50%), Gaps = 13/354 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--R 68
           M   L  +R   G  S NP V  +IV DG V+G G     G PHAEV A+   G+ A  R
Sbjct: 1   MVRCLELARQGAGAVSPNPMVGSVIVCDGEVVGEGYHEAFGGPHAEVNAIASVGDGAVLR 60

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
            +T YV LEPCSH+G++PPCA  IIE GIRRVV+   DP+ +V+GRG+  L   G+ +++
Sbjct: 61  RSTLYVNLEPCSHHGKTPPCADLIIEKGIRRVVIGCGDPNPQVAGRGVAKLRSAGVEVLE 120

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++E+E K    A++T   E R  + LK+A + D  I  A   S  ITG  ++ +VH LR
Sbjct: 121 GVLEAESKRLNEAFMTSHAEGRPFVALKLAETLDGRIATADGQSKWITGDAARLEVHRLR 180

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
              DA+L G  T+ AD   LT R       +P+R++LDP   LS D+ +        +  
Sbjct: 181 CSYDAVLSGAATIRADGSRLTVR--HCAGRNPLRVVLDPSLSLSPDAPVFGDEAKTLLFA 238

Query: 248 VTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
               +    AL +    + +++ +      DL+ +L  L  R V S+LVE G  ++ S  
Sbjct: 239 SQSMEGSPSALRYAAIGVEMVFVEEGTGGLDLRAVLDELHRRQVLSVLVESGGRLSASLA 298

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLE 353
             RL+D + ++ +  + G   + S    G    +    F        G DV LE
Sbjct: 299 RERLLDKLYMFIAPKLFGGDALASFAPLGVSSPDEAPAFRFEPPRLVGEDVLLE 352


>gi|229528728|ref|ZP_04418118.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae 12129(1)]
 gi|229332502|gb|EEN97988.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae 12129(1)]
          Length = 367

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 119/374 (31%), Positives = 179/374 (47%), Gaps = 27/374 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +AGE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+G+G+Q L
Sbjct: 61  MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++E++ +     +L R      ++ LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R                   P+R+ILD  
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
            +L  +  + +T   +PV+ V   +  +   A   K                       V
Sbjct: 241 HQLHPELALYQTP--SPVLRVASENAELCISAEHGKLDLRELLALLA--------QQHNV 290

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRR 343
             + VE G+ +A S I  +LVD IILY +  ++G  G       G  E            
Sbjct: 291 NQVWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDC 350

Query: 344 DYFGSDVCLEYIGK 357
              G+D+ +    K
Sbjct: 351 RMVGADLRIIATPK 364


>gi|88607630|ref|YP_504671.1| riboflavin biosynthesis protein RibD [Anaplasma phagocytophilum HZ]
 gi|88598693|gb|ABD44163.1| riboflavin biosynthesis protein RibD [Anaplasma phagocytophilum HZ]
          Length = 364

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 137/366 (37%), Positives = 196/366 (53%), Gaps = 18/366 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM+ AL  +R  +G    NP+V C++++DG+V+GRG T  GG PHAE+ AL+ AG  
Sbjct: 4   DERFMAMALTLARRGLGNVYPNPAVGCVVIRDGVVVGRGWTVAGGRPHAEIVALQNAGNR 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GAT YVTLEPC H G + PC   +I  G+ RVV+ V DPD RVSG+G+  L   GI +
Sbjct: 64  AIGATVYVTLEPCCHDGVTGPCTSALINAGVSRVVIGVQDPDYRVSGKGISSLEAAGIEV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +++ + +     +   +V  R  IT K+A + D  I         IT  +++  VH 
Sbjct: 124 KYGVLQQQAEALNAGFFYSKVLHRPLITAKLATTLDGKISFDEGCDRWITNDLTRKWVHK 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            RA  DAILVG  TV+ADDP L CRL GL++HSP+R+++D   KL    KI+ TA   P 
Sbjct: 184 QRAMYDAILVGSNTVVADDPMLDCRLPGLEKHSPIRVVVDRSGKLLAHHKIVCTAGTIPT 243

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTIL-VGRGVTSLLVEGGAAVAHSF 302
            IVT+ND          +N+  I  D     L+ ++  L    G+T L VEGG  +    
Sbjct: 244 YIVTDND-----PQCVFENVKYIKVDGGTEFLENMVRALTAQLGITRLFVEGGGILITEL 298

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLE-EGYLEKNFMCVRRD---YFGS-----DVCLE 353
           +  +L+D  I  R+  + G  G+ S  + +    +    V+ D   +F       DV   
Sbjct: 299 LKKKLIDRFIWTRANKISGSKGLNSITDIDAQFGQCCKFVKTDTLSFFDDTVDLFDVKYT 358

Query: 354 YIGKNL 359
            +G NL
Sbjct: 359 QLGSNL 364


>gi|325918412|ref|ZP_08180540.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325535374|gb|EGD07242.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 364

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 126/362 (34%), Positives = 192/362 (53%), Gaps = 8/362 (2%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M V+++D R+M+ ALR +      T  NP V C+IV+DG+ +G G     G PHAEV AL
Sbjct: 1   MNVTAYDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AG  ARGATAYVTLEPC+HYGR+PPCA  +IE G+ RVV  + DP  +V+G G   L 
Sbjct: 61  RAAGALARGATAYVTLEPCAHYGRTPPCALALIEAGVARVVAAMADPFPQVNGGGFALLR 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI +V  +++++ +     +L+R    R  + +K+  S D    +A   S  ITG  +
Sbjct: 121 EAGIEVVSGVLQAQARQLNQGFLSRVERGRPWLRVKLGASLDGRTALASGQSKWITGADA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-SPMRIILDPHFKLSLDSKIIK 238
           +  V   RA++ AIL G GTVLADDP +T RL        P+R++LD   +      I +
Sbjct: 181 RADVQRWRARAGAILTGAGTVLADDPAMTVRLGDDTPFVPPLRVVLDARLRTLECEHIRQ 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
               AP + +  N  PV +L   +     ++    DL  +L +L  RG+  +  E GA +
Sbjct: 241 GD--APTLYLHGNAVPVPSLQNAEFVGMPLHEGRFDLGSVLALLSERGINEVHAEAGATL 298

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLEY 354
           + + + + LVD +++Y + +V+G+   P     G       +          G D+ L Y
Sbjct: 299 SGALLQAGLVDELLVYFAPVVLGDAARPLLAGLGIDTMAQRRTLHLADVRQLGQDLRLRY 358

Query: 355 IG 356
           + 
Sbjct: 359 LP 360


>gi|119474644|ref|ZP_01614997.1| riboflavin-specific deaminase/reductase [marine gamma
           proteobacterium HTCC2143]
 gi|119450847|gb|EAW32080.1| riboflavin-specific deaminase/reductase [marine gamma
           proteobacterium HTCC2143]
          Length = 370

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 116/361 (32%), Positives = 183/361 (50%), Gaps = 21/361 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DA +M  A+  +   +   S NP V C+IV++G +IGRG     G  HAEV A+ +AG  
Sbjct: 3   DADYMQLAIDLAEKGLYTASPNPRVGCIIVRNGQIIGRGYHVRTGQAHAEVNAIADAGN- 61

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
              AT YVTLEPCSH GR+PPC+  +I   + RVVV + DP+  V+G G+  L Q GI+V
Sbjct: 62  VEDATVYVTLEPCSHTGRTPPCSDALITANVARVVVAMADPNPLVAGSGIAKLEQAGIVV 121

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  ++ S+ +     Y+ R       + +K+A+S D    MA   S  ITG  +++ V  
Sbjct: 122 ELGLLASQARQLNPGYIKRMELGLPWVRVKLAMSLDGRTAMASGESQWITGKRARSDVQQ 181

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSLDSK 235
           LRA+S  ++ G+ T++ADD  LT R + L           E  P+R++LD + +L   +K
Sbjct: 182 LRARSCVVMSGVNTIIADDASLTVRADELGLEAGLAKEAAEQQPVRVVLDSNLRLPTTAK 241

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291
           I+       +II+T  ++ V   A       +++C  +    DL  +L  L    V  +L
Sbjct: 242 ILSQP--GRLIIMTAVENSVAEQALVAMGAEVVHCGNKNGQVDLDNVLQFLAEMSVNEIL 299

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGS 348
           VE GA ++ +   + LVD   +Y +  ++G    P    PL     ++       +  G 
Sbjct: 300 VEAGATLSGALAEAGLVDHYTVYMAPTLLGNTARPLLQLPLATMAEQQRLQIDSIEPIGE 359

Query: 349 D 349
           D
Sbjct: 360 D 360


>gi|94264512|ref|ZP_01288299.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific
           deaminase-like [delta proteobacterium MLMS-1]
 gi|93455071|gb|EAT05298.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific
           deaminase-like [delta proteobacterium MLMS-1]
          Length = 374

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 135/372 (36%), Positives = 189/372 (50%), Gaps = 22/372 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ D  +M  AL  +R  VG T+ NP V  ++VK+G V+G+G     G PHAE +AL  
Sbjct: 1   MTAADLTYMRLALAEARKGVGKTAPNPCVGAVVVKNGRVVGKGWHRKIGQPHAEAEALRA 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A GAT YVTLEPC+H GR+PPC++ II  GIRRVV  + DP   V+  G + L   
Sbjct: 61  AGEAAAGATIYVTLEPCNHLGRTPPCSEAIIAAGIRRVVYGLADPH-EVARGGAKRLESA 119

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ ++  ++  E +     ++ R    R  + LK AVS D  I  A   S  ITG  ++ 
Sbjct: 120 GLEVLGGVLADECRRLNLPFIKRVTCGRPWVLLKAAVSLDGRIAAATGHSQWITGPPARR 179

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-QEHSPMRIILDPHFKLSLDSK-IIKT 239
             H LR QSDAILVG GTVLADDP LT RL G  +   P+R++LD   +    ++ +I+ 
Sbjct: 180 LAHRLRQQSDAILVGSGTVLADDPSLTTRLPGGRRGRDPLRVVLDSRLQTPPTARMLIQQ 239

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIY--------------CDCRDLKKLLTILVGR 285
           +  A  I          A A       ++               C   DL ++L  L   
Sbjct: 240 SPAATWIFCAPEAATERATALEAAGARVVRLEPTPGGQSGPEPNCSGLDLWQVLRELAAN 299

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCV 341
           GV  LLVEGG  V  SF+   L D  +   + ++IG  G+P  +PL    ++K      V
Sbjct: 300 GVNQLLVEGGGRVHGSFLRQNLADEAVFCIAPLLIGADGLPVVAPLNCKRVDKAPRLREV 359

Query: 342 RRDYFGSDVCLE 353
                G D+ L 
Sbjct: 360 SSRRLGDDIMLR 371


>gi|306841987|ref|ZP_07474661.1| riboflavin biosynthesis protein RibD [Brucella sp. BO2]
 gi|306843711|ref|ZP_07476311.1| riboflavin biosynthesis protein RibD [Brucella sp. BO1]
 gi|306276021|gb|EFM57730.1| riboflavin biosynthesis protein RibD [Brucella sp. BO1]
 gi|306287915|gb|EFM59332.1| riboflavin biosynthesis protein RibD [Brucella sp. BO2]
          Length = 373

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 168/358 (46%), Positives = 230/358 (64%), Gaps = 7/358 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM A +R++R H GLT TNPSV  +IVKDG+++GRGVTA GG PHAE QAL EAGE 
Sbjct: 15  DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEAGEA 74

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPC+H+GR+PPCAQ ++  G+ RVVV   DPD RVSG+G   L + GI +
Sbjct: 75  ARGATAYVTLEPCAHHGRTPPCAQALVRAGVTRVVVAATDPDERVSGKGFAILREAGIEV 134

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++  +    L  YL R  +KR  + LK+A+S D MIG  G G V ITG +S+ Q H+
Sbjct: 135 VPGILPEQAADDLAGYLNRSAKKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ+D IL+GI T LADDP L CRL GL+  SP+R++LD   +L L S+++++A   P+
Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLESRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254

Query: 246 IIVT-ENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
            +   E        A    +  I+  +  D    L +LL  L  +G+ S+LVEGGA VA 
Sbjct: 255 WVACREEASDERRAALGAASCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314

Query: 301 SFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           SF++ +LVD ++++RS +VIG   G+     E ++   F  +R+  +  D C EY+  
Sbjct: 315 SFLDEKLVDRLVIFRSPLVIGAADGVAVEELETHIASEFKILRQVRYADDACAEYVRN 372


>gi|254507822|ref|ZP_05119952.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus 16]
 gi|219549195|gb|EED26190.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus 16]
          Length = 368

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 111/370 (30%), Positives = 179/370 (48%), Gaps = 29/370 (7%)

Query: 1   MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP  +  D   MS A+  ++  +  T+ NP+V C+I ++G ++G G     G PHAEV A
Sbjct: 1   MPQFTETDFNMMSRAIWLAKGGIYTTAPNPNVGCVITQNGDIVGEGFHYRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           L  AG+++ GATAYVTLEPCSHYGR+PPCA+ +I+  + +V+  + DP+ +V+GRG+Q L
Sbjct: 61  LRMAGDKSVGATAYVTLEPCSHYGRTPPCAEGLIKAKVAKVICAMQDPNPQVAGRGIQML 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++E +      +++ R       + LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLEQDAIALNPSFIKRMQTGLPFVQLKMAASLDGQTALANGKSQWITSEA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227
           ++  V   RAQS AIL    TV+ D+  L+ R + L E             P+R+ILD  
Sbjct: 181 ARRDVQRYRAQSGAILSTSKTVIEDNASLSVRWSDLPESVKAQYSESQLRQPVRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRG 286
            +L+ + K+ +       +IV    D  + L   ++           L+     L     
Sbjct: 241 NQLTSELKLFQAGGE--TLIVGPEGDVEMTLNADQQ---------ISLQDTFATLASAHN 289

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVR 342
           +  + VE GA +A S +   LVD +++Y +  ++G  G       G        +     
Sbjct: 290 INHIWVEAGATLASSLLQQDLVDELVIYLAPKIMGSDGRGLLGALGLESMSDVIDLDIKD 349

Query: 343 RDYFGSDVCL 352
               G D+ +
Sbjct: 350 VRQVGKDIRI 359


>gi|262370188|ref|ZP_06063515.1| pyrimidine deaminase [Acinetobacter johnsonii SH046]
 gi|262315227|gb|EEY96267.1| pyrimidine deaminase [Acinetobacter johnsonii SH046]
          Length = 367

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 120/360 (33%), Positives = 188/360 (52%), Gaps = 19/360 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  +      T  NP+V C+IVKDG+++G G     G  HAEV A+ EAGE+
Sbjct: 12  DQAWMKQAIALALQGQYSTKPNPNVGCVIVKDGLLLGTGYHPQAGQLHAEVFAMREAGEQ 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            +GATAYVTLEPC+HYGR+PPCA+ ++E G+ RVV+   DP+  V+G+G+Q L + GI V
Sbjct: 72  TQGATAYVTLEPCAHYGRTPPCAKGLVEAGVARVVIACPDPNPLVAGKGVQILKEAGIEV 131

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  + ++E       +L        ++ LK+A S D    MA   S  ITG  ++  V  
Sbjct: 132 DVGICQTEAHQLNAGFLKAMATGMPYVRLKVASSLDGRTAMASGESKWITGPAARLDVQH 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCR-----LNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            RA S  ++ GI TVLADDP+L  R      +      P R++LD   +L L ++I++  
Sbjct: 192 FRAISGVVITGIETVLADDPQLNVRQLQSVADLTTVVQPKRLVLDRQGRLPLTAQILQQP 251

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-RGVTSLLVEGGAAVA 299
                ++V       LA      ++ ++    + L +LL  LV    +  ++VE GA ++
Sbjct: 252 D---TVMVMGPYRQALA------DVGVLQFAVQPLDQLLKQLVQSHQIYDVMVEAGATLS 302

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
            +F+  +LVD +I Y +  ++G+       +   +   +  F  +     G DV L  I 
Sbjct: 303 TAFLQEKLVDEMISYVAPTLLGQSARAMFNAEFSQMAEQLRFKLMDVTQLGDDVRLTLIP 362


>gi|124026389|ref|YP_001015504.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. NATL1A]
 gi|123961457|gb|ABM76240.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. NATL1A]
          Length = 350

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 104/352 (29%), Positives = 173/352 (49%), Gaps = 10/352 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  +++ +    G TS NP V  +++  +G ++G G     G PHAE++AL +AG+++  
Sbjct: 1   MRRSIQLALLAEGRTSPNPLVGSVVLDSNGRLVGEGFHTGAGNPHAEIEALAQAGKKSLD 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
            T  VTLEPC H G +PPC + II+ G+++VVV + DPD RVSG G+  L   G+ +++ 
Sbjct: 61  GTIVVTLEPCCHQGLTPPCTEAIIKAGLKKVVVGMVDPDPRVSGNGISRLKDSGLEVIEG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++  E +     +  R    R    LK A+S D  IG+    S  IT   +++ VH +R+
Sbjct: 121 VLSQECESINREFSFRVRHGRPWGILKWAMSLDGKIGLPNGCSKWITDIPARDSVHRIRS 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA++VG GTV AD+P LT R  G  +  P+R++      L   +K+  T +   ++  
Sbjct: 181 KCDAVIVGGGTVRADNPLLTSR--GKSDFEPLRVVFSRTLNLPQSAKLWDTKIARTLVAY 238

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
               D              +  +  +  +LL+ L  +G   +L E G  +A S I +  V
Sbjct: 239 GPEGDESFFSDLLD-GPEKLRLNSDNPSELLSSLAKKGCNKILWECGPQLATSAIEANCV 297

Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355
             ++++ +  ++G     SPL     E             D  G D+C   I
Sbjct: 298 QELVVFVAPKLLGGMSSMSPLNNFGFESISSSYKLQHSFLDRKGEDICWRLI 349


>gi|73666745|ref|YP_302761.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Ehrlichia canis str. Jake]
 gi|72393886|gb|AAZ68163.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Ehrlichia canis str. Jake]
          Length = 361

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 137/355 (38%), Positives = 201/355 (56%), Gaps = 9/355 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   D +FMS ALR +R  +G    NP+V C++V  GI++GRG T  GG PHAEV AL  
Sbjct: 1   MMHDDKKFMSLALRIARRGLGNVFPNPAVGCIVVNRGIIVGRGWTQVGGRPHAEVVALNN 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  A+GAT YVTLEPCSHYG++ PCA  +I+ GI+R+V+   DPDVRVSG G++ L   
Sbjct: 61  AGYLAKGATVYVTLEPCSHYGKTGPCALKLIDAGIKRMVIAARDPDVRVSGNGIKLLRDA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
            I +   +M  E +     +   +++ R  IT+K+A + D  I ++   S  IT  +++N
Sbjct: 121 NIDVKCDLMYKEAQELNVGFFFTKIKGRPFITVKLASTLDGKIALSNGNSKWITNQLTRN 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH  R+  DA++VG  TV+ DDP L  R+ GL+ +SP+RI++D   K+     I+KTA 
Sbjct: 181 WVHKQRSMYDAVMVGSNTVVHDDPMLNTRIPGLECYSPVRIVIDRFGKICTYHNIVKTAD 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAH 300
           + P  I+T  DD       + K + +   D   LK  + ++  + G+T L VEGG+ +  
Sbjct: 241 IIPTYILT--DDTSKTKLGKAKYLIVTGTDNF-LKNAMKVISMKIGITRLFVEGGSILIT 297

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVC 351
             + S+LVD II  RS  + G   + S  +   L      NF  +   YF  DV 
Sbjct: 298 ELLKSQLVDRIIWCRSNKIFGANAVSSVGDLNILTLQNLYNFRKIDTLYFDDDVV 352


>gi|166154072|ref|YP_001654190.1| riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis 434/Bu]
 gi|166154947|ref|YP_001653202.1| riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|165930060|emb|CAP03543.1| Riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis 434/Bu]
 gi|165930935|emb|CAP06497.1| Riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 375

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 107/329 (32%), Positives = 161/329 (48%), Gaps = 5/329 (1%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S     FM  A+            NP V C+IVK+G VIG G     G PHAEV A+++
Sbjct: 4   LSEQQLFFMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQD 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                 GA  YVTLEPC H+GR+PPC   +I+  +  V V + DPD RV  +G+  L   
Sbjct: 64  QKCSLEGAEVYVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAA 123

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   +   E K  L  YL ++      + +K A S D      G  S  I+G +++ 
Sbjct: 124 GIPVYVGVGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARA 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKT 239
            V  LRA+S AI+VG  TV  D+P L+ R     L E  P+R+++D    + L+S++   
Sbjct: 184 DVGKLRAESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDL 243

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297
           +  + +   T+          +   + +        DLK LL  L  RG   +LVEGGA 
Sbjct: 244 SSGSTLFATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLAERGCLQVLVEGGAQ 303

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           +  +F   +LV++ ++Y     +G+ G P
Sbjct: 304 LHSAFWQQKLVNAGVIYWGPKFLGDQGQP 332


>gi|198282613|ref|YP_002218934.1| riboflavin biosynthesis protein RibD [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|198247134|gb|ACH82727.1| riboflavin biosynthesis protein RibD [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 357

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 127/358 (35%), Positives = 185/358 (51%), Gaps = 12/358 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           MS AL  +   +     NP V  ++VKDG VIGRG     G PHAEV AL+EAG  ARGA
Sbjct: 1   MSEALVLAEQGLYSAHPNPCVGAVLVKDGRVIGRGAHLQAGEPHAEVLALKEAGAAARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           TAYVTLEPCSHYGR+PPCA  +I  GI RVV+ + DP+  V+GRG++ L   G++ +   
Sbjct: 61  TAYVTLEPCSHYGRTPPCADALIAAGIARVVIAMRDPNPLVAGRGVERLRAAGVVAEEGC 120

Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            E+  +     +L R    R  + LK A+S D  + +A   S  +TG  ++  V   RA+
Sbjct: 121 LEAAAEALNPGFLRRMRHGRPWLRLKQAMSLDGRVALANGRSQWLTGEAARADVQQERAR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           + AILVGIGTVLAD+P L  RL       P+++I+D H +   D+ +  T     V I  
Sbjct: 181 ASAILVGIGTVLADNPRLAPRLEAPLRRYPVKVIMDSHLRTPPDAALFGTPGA--VWIFH 238

Query: 250 ENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
             D PV A A        +          D ++++ +L  R +  +LVE G  VA S   
Sbjct: 239 GQDAPVAARAALCAAGAELLFCRGTVQGLDWQEVMGMLAERQINEVLVEAGPGVAASLFA 298

Query: 305 SRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           + L+D  +LY + +++G    P     P  +      +  ++    G+D+      + 
Sbjct: 299 AGLIDEWLLYVAPLLLGLDARPVLATGPYSDLAEVPRWSVIQSSRLGNDIKWTLRPQE 356


>gi|153828188|ref|ZP_01980855.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 623-39]
 gi|229522216|ref|ZP_04411633.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae TM 11079-80]
 gi|148876277|gb|EDL74412.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 623-39]
 gi|229341141|gb|EEO06146.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae TM 11079-80]
          Length = 367

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 120/374 (32%), Positives = 181/374 (48%), Gaps = 27/374 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +AGE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+G+G+Q L
Sbjct: 61  MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++E++ +     +L R      ++ LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R + L               P+R+ILD  
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
            +L  +  + +T   +PV+ V   +  +   A   K                       V
Sbjct: 241 HQLHPELALYQTP--SPVLRVASENAELCISAEHGKLDLRELLALLA--------QQHNV 290

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRR 343
             + VE G+ +A S I  +LVD IILY +  ++G  G       G  E            
Sbjct: 291 NQVWVEAGSQLAKSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDC 350

Query: 344 DYFGSDVCLEYIGK 357
              G+D+ +    K
Sbjct: 351 RMVGADLRIIATPK 364


>gi|270284895|ref|ZP_06194289.1| riboflavin-specific deaminase [Chlamydia muridarum Nigg]
 gi|270288923|ref|ZP_06195225.1| riboflavin-specific deaminase [Chlamydia muridarum Weiss]
 gi|13633863|sp|Q9PLJ6|RIBD_CHLMU RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
           RecName:
           Full=Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase; Includes: RecName:
           Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
          Length = 371

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 115/369 (31%), Positives = 173/369 (46%), Gaps = 11/369 (2%)

Query: 1   MPVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           M VSS     FM  A+            NP V C+IVK+G +IGRG     G PHAEV A
Sbjct: 1   MEVSSEQQLFFMREAVALGERGRIFAPPNPWVGCVIVKNGCIIGRGWHKGIGSPHAEVCA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
            ++      GA  YVTLEPC H+GR+PPC   +I+  +  V + + DPD RV  RG+  L
Sbjct: 61  FQDQTSSLVGADVYVTLEPCCHFGRTPPCVDLLIKSKVSSVYIALLDPDPRVCKRGVARL 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            + GI +   +   E K  L  YL ++      + +K A S D         S  I+G  
Sbjct: 121 KEAGISVYVGIGHEEAKASLQPYLHQRETGLPWVVMKTAASLDGQTSDRRGISQWISGEQ 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKI 236
           ++  V  LRA+S A++VG  TV  D+P L+ R+    L E  P+R+++D    + LD+++
Sbjct: 181 ARLDVGRLRAESQAVIVGSRTVCLDNPRLSARMPSGDLYERQPLRVVVDSRGSVPLDARV 240

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEG 294
                   ++  TE            + + +        DLK+LL  L  +G   +LVEG
Sbjct: 241 WNPDSGNVLLATTEQCSKEHIQKLEDRGVEVWKSSPQQVDLKRLLQYLAEKGCLQVLVEG 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY---FGSDV- 350
           GA +  +F    LV++ ++Y     +G+ G P   +      N   V+       G  V 
Sbjct: 301 GARLHSAFWREHLVNAGVIYWGPKFLGDQGSPMLRDLQLCLDNAEHVKITKTFLVGDSVK 360

Query: 351 -CLEYIGKN 358
            C E +G+ 
Sbjct: 361 TCFECVGRE 369


>gi|167563753|ref|ZP_02356669.1| riboflavin biosynthesis protein RibD [Burkholderia oklahomensis
           EO147]
          Length = 369

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 115/357 (32%), Positives = 177/357 (49%), Gaps = 19/357 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
           M  AL  +   +  T+ NP V C+IV++ +VIG G T   G  HAEVQAL++A   G + 
Sbjct: 1   MQRALALAARGMYTTTPNPRVGCVIVQNDVVIGEGFTQPAGQDHAEVQALKDARTRGGDL 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           R AT YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L   GI + 
Sbjct: 61  RDATVYVTLEPCSHFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAMLRDAGIDVR 120

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++  E       +++R    R  + +K A S D    +A   S  ITG  +++  H  
Sbjct: 121 CGLLTHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAARDDGHKW 180

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA++ AIL GIGTV  DDP+L  R        P R+++D    + L +++++   L   +
Sbjct: 181 RARACAILTGIGTVREDDPQLNVR-GVDTPRQPRRVLIDSRLDIPLSARLLEGGSL---L 236

Query: 247 IVTENDDP---VLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           I     DP     A A R +   I+         DL  +L +L  RG+  L VE G  + 
Sbjct: 237 IFCGALDPQSEARADALRARGAEIVPLANARGKVDLPAMLAMLGERGINELHVEAGHKLN 296

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCL 352
            S +  R VD +++Y +  ++G         +                +  G D+ +
Sbjct: 297 GSLLRERCVDELLVYLAPSLLGADAAAMFEVAAPASLADRTRLAFHSVERVGDDLRI 353


>gi|126696788|ref|YP_001091674.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. MIT 9301]
 gi|126543831|gb|ABO18073.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. MIT 9301]
          Length = 364

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 102/357 (28%), Positives = 173/357 (48%), Gaps = 9/357 (2%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           ++M  A+  +      TS NP V  +I+ K+G +I  G     G PHAE  A      +A
Sbjct: 10  KWMKRAIFLASLGKNTTSPNPRVGAVILDKNGSLISEGFHFKAGMPHAEAMAFNNLKNDA 69

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           +G T YV LEPC H G++PPC   +I  G+++V + ++DPD RVSG+G++ L + GI + 
Sbjct: 70  KGGTMYVNLEPCCHQGKTPPCVDKVISSGLKKVYISMEDPDERVSGKGIKLLKEAGIQVN 129

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             + + E      A++ R   K++   LK A+S D  I +    S  IT   S++ VH  
Sbjct: 130 LGLCKKESLDLNKAFIHRNTTKKAFGVLKWAMSIDGRIALKNGKSKWITNDESRSLVHSF 189

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA+ DAI++G  T+  D+P LT R  G +   P+R++      L   S +   +    ++
Sbjct: 190 RAEFDAIIIGGNTLRRDNPFLTTR--GSKNPEPLRVVFTKSLDLPSKSNLWDCSKAKTLV 247

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           I   +      L+   K + +      + + +  IL  RG   +L E G  +A + I S 
Sbjct: 248 IYDSSTANESYLSRIPKCVEVEKVLSDNPELISKILAKRGCNKVLWECGPNLATAAIQSN 307

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLEYIGKN 358
            +  II + +  ++G      P  +   E+    ++         G+D+C++ + KN
Sbjct: 308 CIQEIITFIAPKILGGENSMHPFGDFEFEEMHEVIKLSNSQVSLIGNDICVKSLCKN 364


>gi|149001717|ref|ZP_01826690.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP14-BS69]
 gi|147760175|gb|EDK67164.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP14-BS69]
          Length = 341

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 111/344 (32%), Positives = 173/344 (50%), Gaps = 13/344 (3%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCA 89
            V  +IVKD  +IG+G   + G PHAE  AL+   E   GAT YVTLEPC H+G++PPC 
Sbjct: 1   MVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRESPVGATLYVTLEPCCHFGKTPPCI 60

Query: 90  QFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEK 148
             II+ GI RVV+   D +  VSG+G++ L +  + +   ++E+E    + ++     + 
Sbjct: 61  DAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQVTVGILENECLNLIKSFRKYITQH 120

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
             ++ +K A+S D  I      S  IT   ++  VH LR    AI+VG+ TV+ DDP LT
Sbjct: 121 VPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQLRHHVSAIMVGVNTVIQDDPLLT 180

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
           CRL   +  +P+RII D H +  L SKI+KTA      I T ++D      ++     I+
Sbjct: 181 CRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKTYIATSSEDKNKMKLYQNHGCEIL 238

Query: 269 YCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
               +    DL  L+  L    + SL++EGG+ +  S +  ++VD + +Y +  + G   
Sbjct: 239 SIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPKIFGGS- 297

Query: 325 IPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIGKNLCLQE 363
              P+    +      +R         G+D  +E      C QE
Sbjct: 298 AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEVIYPCSQE 341


>gi|255349125|ref|ZP_05381132.1| riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis 70]
 gi|255503662|ref|ZP_05382052.1| riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis 70s]
 gi|255507341|ref|ZP_05382980.1| riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis D(s)2923]
 gi|289525774|emb|CBJ15255.1| Riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis Sweden2]
 gi|296435349|gb|ADH17527.1| riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis E/150]
 gi|296439066|gb|ADH21219.1| riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis E/11023]
          Length = 375

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 107/329 (32%), Positives = 161/329 (48%), Gaps = 5/329 (1%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S     FM  A+            NP V C+IVK+G VIG G     G PHAEV A+++
Sbjct: 4   LSEQQLFFMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQD 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                 GA  YVTLEPC H+GR+PPC   +I+  +  V V + DPD RV  +G+  L   
Sbjct: 64  QKCSLEGAEVYVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAA 123

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   +   E K  L  YL ++      + +K A S D      G  S  I+G +++ 
Sbjct: 124 GIPVYVGVGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARA 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKT 239
            V  LRA+S AI+VG  TV  D+P L+ R     L E  P+R+++D    + L+S++   
Sbjct: 184 DVGKLRAESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDL 243

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297
           +  + +   T+          +   + +        DLK LL  L  RG   +LVEGGA 
Sbjct: 244 SSGSTLFATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLAERGCLQVLVEGGAQ 303

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           +  +F   +LV++ ++Y     +G+ G P
Sbjct: 304 LHSAFWQQKLVNAGVIYWGPKFLGDQGQP 332


>gi|149909347|ref|ZP_01898003.1| Putative pyrimidine deaminase/pyrimidine reductase [Moritella sp.
           PE36]
 gi|149807664|gb|EDM67612.1| Putative pyrimidine deaminase/pyrimidine reductase [Moritella sp.
           PE36]
          Length = 440

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 116/395 (29%), Positives = 184/395 (46%), Gaps = 45/395 (11%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            +  D   M  A+  ++     T+ NP+V C++VK   VIG G     G  HAEV AL  
Sbjct: 40  FNDTDHLHMQRAIALAQKGRFTTAPNPNVGCVLVKADKVIGEGFHLRAGEAHAEVHALNS 99

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG++A+GAT YVTLEPCSHYGR+PPCA  ++   +  VV+ + DP+ +V+G+G+  L   
Sbjct: 100 AGDDAQGATCYVTLEPCSHYGRTPPCAAALVNANVHEVVIAMVDPNPQVAGKGIAILIAA 159

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++ ++       ++ R  E+R  + LK+A S D    +    S  ITG  +++
Sbjct: 160 GIKVRVGLLSAQSHALNPGFILRMREQRPFVRLKMAASLDGRTALKNGESKWITGSAARS 219

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------------------QEHSP 219
            V + RAQ+ AIL    TV+ DD  L  R + L                      Q   P
Sbjct: 220 DVQVYRAQASAILSTASTVIMDDASLNVRYSELGTSQADYPLDYAEKSLIQAEQSQVRQP 279

Query: 220 MRIILDPHFKLSLDSK---------------IIKTALLAPVIIVTENDDPVLALAFRKKN 264
           +R++LD H +L    +               ++   +   V + T+N      L     +
Sbjct: 280 IRVVLDNHRRLDAHLEPSAKELKLFAQPGQILLVNGVKNTVNVATKNSSTEQLLVNESVS 339

Query: 265 INIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
              I  D     DL +L+T L  + +  L VE GA +A + + ++LVD II+Y +  ++G
Sbjct: 340 RIEIEQDSHHNIDLNQLMTTLAQQNINDLWVEAGATLAGALLENKLVDEIIIYLAPKLMG 399

Query: 322 EG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           +      + S L E      F        G D+ +
Sbjct: 400 DSARGLAVLSELTEMAQVPTFSFTDITQIGDDLRI 434


>gi|15642269|ref|NP_231902.1| riboflavin-specific deaminase [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121586201|ref|ZP_01675992.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 2740-80]
 gi|153820478|ref|ZP_01973145.1| riboflavin biosynthesis protein RibD [Vibrio cholerae NCTC 8457]
 gi|153823263|ref|ZP_01975930.1| riboflavin biosynthesis protein RibD [Vibrio cholerae B33]
 gi|227082395|ref|YP_002810946.1| riboflavin biosynthesis protein RibD [Vibrio cholerae M66-2]
 gi|229507656|ref|ZP_04397161.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae BX 330286]
 gi|229512149|ref|ZP_04401628.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae B33]
 gi|229519284|ref|ZP_04408727.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae RC9]
 gi|229607160|ref|YP_002877808.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae MJ-1236]
 gi|254849400|ref|ZP_05238750.1| riboflavin-specific deaminase [Vibrio cholerae MO10]
 gi|298500355|ref|ZP_07010160.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MAK 757]
 gi|9656833|gb|AAF95415.1| riboflavin-specific deaminase [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121549613|gb|EAX59637.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 2740-80]
 gi|126508979|gb|EAZ71573.1| riboflavin biosynthesis protein RibD [Vibrio cholerae NCTC 8457]
 gi|126519224|gb|EAZ76447.1| riboflavin biosynthesis protein RibD [Vibrio cholerae B33]
 gi|227010283|gb|ACP06495.1| riboflavin biosynthesis protein RibD [Vibrio cholerae M66-2]
 gi|229343973|gb|EEO08948.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae RC9]
 gi|229352114|gb|EEO17055.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae B33]
 gi|229355161|gb|EEO20082.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae BX 330286]
 gi|229369815|gb|ACQ60238.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae MJ-1236]
 gi|254845105|gb|EET23519.1| riboflavin-specific deaminase [Vibrio cholerae MO10]
 gi|297541048|gb|EFH77102.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MAK 757]
          Length = 367

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 120/374 (32%), Positives = 179/374 (47%), Gaps = 27/374 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +AGE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+G+G+Q L
Sbjct: 61  MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++E++ ++    +L R       + LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLEADARVLNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R                   P+R+ILD  
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
            +L  +  + +T   +PV+ V   +  +   A   K                       V
Sbjct: 241 HQLHPELALYQTP--SPVLRVASENAELCISAENGKLDLRELLALLA--------QQHNV 290

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRR 343
             L VE G+ +A S I  +LVD IILY +  ++G  G       G  E            
Sbjct: 291 NQLWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDC 350

Query: 344 DYFGSDVCLEYIGK 357
              G+D+ +    K
Sbjct: 351 RMVGADLRIIATPK 364


>gi|253990958|ref|YP_003042314.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253782408|emb|CAQ85572.1| Riboflavin biosynthesis protein [Photorhabdus asymbiotica]
          Length = 362

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 122/363 (33%), Positives = 177/363 (48%), Gaps = 20/363 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL  +R     TS NP+V C+IV+DG ++G G     G PHAEV AL  AG++A+G+
Sbjct: 1   MARALELARQGCFTTSPNPNVGCVIVRDGQIVGEGFHLRSGGPHAEVHALRMAGDKAKGS 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPCSH+G++PPCA  +I  G+ RVV  + DP+ +V+GRGL  L Q GI +   +
Sbjct: 61  TAYVTLEPCSHHGKTPPCADALIAAGVSRVVTAMQDPNPQVAGRGLYKLQQAGIEVEHGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M +E +     +L R      +I LK+A S D    +A   S  IT   S+  V  LRAQ
Sbjct: 121 MMAEAESLNRGFLKRMRTGFPYIQLKMASSLDGRTALASGESKWITSSQSRYDVQKLRAQ 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKIIK 238
             AIL    TVLADDP LT R + L               P+R+I+D   ++    +   
Sbjct: 181 CSAILSSSNTVLADDPYLTVRWSELDAETQAVYPEENLRQPVRVIVDSQNRVVQQHQ--V 238

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
                   +     D        ++ +   +    DL  L+  L  R + ++ VE G  +
Sbjct: 239 IQQPGHCWLARTKADGDNWPENVEQILLPAHGVGVDLVLLMMQLGKRQINTVWVECGPLL 298

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           A + +   LVD ++LY +  V+G+       IP  L+       F        G D+ L 
Sbjct: 299 AGALLTLGLVDELVLYVAPKVLGDTACGLFTIPE-LKSLVKAPEFDIFDIQQIGPDLRLR 357

Query: 354 YIG 356
              
Sbjct: 358 LRP 360


>gi|219668833|ref|YP_002459268.1| riboflavin biosynthesis protein RibD [Desulfitobacterium hafniense
           DCB-2]
 gi|219539093|gb|ACL20832.1| riboflavin biosynthesis protein RibD [Desulfitobacterium hafniense
           DCB-2]
          Length = 365

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 129/351 (36%), Positives = 188/351 (53%), Gaps = 9/351 (2%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D  +MS AL  +   +G TS NP V C+IVKDG ++G G     G PHAEV AL+ AG
Sbjct: 2   ELDNHYMSRALELAALAMGRTSPNPLVGCVIVKDGAIVGEGYHQKAGTPHAEVHALQAAG 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGATAYVTLEPCSH+G++PPCA  +I+ GI+RVVV + DP+  V G+G+  L   GI
Sbjct: 62  EHARGATAYVTLEPCSHFGKTPPCADALIKAGIQRVVVAMVDPNPLVGGQGITRLRAAGI 121

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   + E E +     +L         +  K A++ D  I      S  +T   S+  V
Sbjct: 122 QVDVGLKEKEARTLNKGFLKAMQTGLPFVLYKSALTLDGKIATESGDSKWVTNEASRAYV 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H LR   D I+VG  TV  D+P L CR++  +   P+R+I+D   ++ L + ++ ++  A
Sbjct: 182 HRLRDHFDVIMVGSETVRQDNPALNCRID--EGRDPVRLIVDGTLQIPLQAAVLASSCTA 239

Query: 244 PVIIVTENDDPVLALAFRK--KNINIIYCDC---RDLKKLLTILVGRGVTSLLVEGGAAV 298
           P +I T    P+  L   +  +N+ +   D      LK LL  LV RG  S+L+EGG  +
Sbjct: 240 PCLIATTASAPLDKLKALRALENVEVWQYDSPRYVPLKDLLGDLVKRGWNSVLLEGGGGL 299

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           A S +  +L+D +    +  +IG  G PSPL    L      +  ++   D
Sbjct: 300 AGSLLREQLIDEVEFIYAPKLIGGKG-PSPLTGLELPLMAQAIPLEFLEID 349


>gi|123968996|ref|YP_001009854.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. AS9601]
 gi|123199106|gb|ABM70747.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. AS9601]
          Length = 364

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 100/357 (28%), Positives = 170/357 (47%), Gaps = 9/357 (2%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           ++M  A+  +      TS NP V  +I+ K+G +I  G     G PHAE  A     ++ 
Sbjct: 10  KWMKRAIFLASLGKNTTSPNPRVGAVIIDKNGKLIAEGFHYKAGMPHAEAMAFNNLKKDP 69

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           +G + YV LEPC H GR+PPC   +I  GI++  + ++DPD RV+G+G++ L + GI V 
Sbjct: 70  KGGSIYVNLEPCCHQGRTPPCVDKVISSGIKKAYISIEDPDARVAGKGIKLLEEAGIQVH 129

Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             + + E     +A++ R +  ++    K A+S D  I +    S  IT   S+  VH  
Sbjct: 130 LGLCKKESLDLNNAFIHRNITNKAFGVFKWAMSIDGRIALKNGKSKWITNEESRALVHSF 189

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R++ DAI++G  T+  D+P LT R  GL+   P+R++      L   S +        ++
Sbjct: 190 RSEFDAIIIGGNTLRRDNPLLTTR--GLKNPEPLRVVFTKSLDLPTKSNLWDCNKAKTLV 247

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           I   +      L    K++ I      + + +  IL  RG   +L E G  +A + I S 
Sbjct: 248 IYDSSTANESYLNRIPKSVEIEKVSSDNPELISKILAKRGCNKVLWECGPRLATAAIKSN 307

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLEYIGKN 358
            +  II + +  ++G     +PL +    +    ++         G D+C++   KN
Sbjct: 308 CIQEIITFIAPKILGGENSMNPLGDFEFGEMHEIIKLSESQHSLIGDDICVKGSLKN 364


>gi|15888505|ref|NP_354186.1| bifunctional riboflavin deaminase-reductase [Agrobacterium
           tumefaciens str. C58]
 gi|15156207|gb|AAK86971.1| bifunctional riboflavin deaminase-reductase [Agrobacterium
           tumefaciens str. C58]
          Length = 414

 Score =  326 bits (835), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 181/413 (43%), Positives = 234/413 (56%), Gaps = 56/413 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M   + D +FM+ A+  S  H G T TNPSV C++VKDG +I   VTA GG PHAE QAL
Sbjct: 1   MTSRADDEKFMARAIEVSLRHQGQTLTNPSVGCVLVKDGQIIAEAVTAIGGRPHAERQAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           E AGE ARGATAYVTLEPCSH+G++PPCA  ++E G+ RVVV VDDPD RVSGRG   L 
Sbjct: 61  EIAGEAARGATAYVTLEPCSHWGKTPPCANALVEYGVARVVVAVDDPDERVSGRGYTILR 120

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI+V+  ++  EGK  L  YLTRQ++KR H+ LK+AVS D MIG  G G V ITG  S
Sbjct: 121 DAGIVVETGLLRDEGKRALAGYLTRQMKKRPHVILKLAVSADGMIGREGEGQVAITGAES 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  VH LRA+ D ILVGI T +ADDPELT R+ G++  SP+RI+LD  F+L L SK++++
Sbjct: 181 RRVVHELRARCDGILVGIRTAIADDPELTVRIAGMERRSPVRIVLDRQFELPLMSKLVRS 240

Query: 240 ALLAPVIIVTENDDPV-----------LALAFRKKNINIIYCDCRD-------------- 274
           A   PVI+       +            AL+ R     + +    D              
Sbjct: 241 AREVPVIVAALPPSALPGISPSRGEIGEALSARSNFEPVSHSPAVDVGQDSAPSIPPLEG 300

Query: 275 ------------------------------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
                                         L+ LL IL   G++ LLVEGGA  A SF+ 
Sbjct: 301 EMPGRAEGGNPNLRRQLLTDAGVQILEASTLENLLHILAESGISELLVEGGAFAAKSFLE 360

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           + LVD I+L+ S +VIGEGGI +PL    +  ++  V    +G D C +Y   
Sbjct: 361 AGLVDRIMLFESPVVIGEGGIETPLRRADITGDYALVSETAYGPDRCFDYERP 413


>gi|72382670|ref|YP_292025.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. NATL2A]
 gi|72002520|gb|AAZ58322.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. NATL2A]
          Length = 364

 Score =  326 bits (835), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 107/366 (29%), Positives = 178/366 (48%), Gaps = 14/366 (3%)

Query: 1   MPVSSFDAR----FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHA 55
           M   + D +    +M  +++ +    G TS NP V  +++  +G ++G G  +  G PHA
Sbjct: 1   MINLAEDQKIWVPWMRRSIQLALLAEGRTSPNPLVGSIVLDSNGRLVGEGFHSGAGNPHA 60

Query: 56  EVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           E++AL +AG++A   T  VTLEPC H G +PPC + II  G+++VVV + DPD RVSG G
Sbjct: 61  EIEALAQAGKKALDGTIVVTLEPCCHQGLTPPCTEAIIRAGLKKVVVGMVDPDPRVSGNG 120

Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           +  L   G+ +++ ++  E +     +  R    R    LK A+S D  IG+    S  I
Sbjct: 121 ISRLKDSGLEVIEGVLSQECESINREFSFRVRHGRPWGILKWAMSLDGKIGLPNGCSKWI 180

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           T   +++ VH +R++ DA++VG GTV AD+P LT R     +  P+R++      L   +
Sbjct: 181 TDIPARHSVHRIRSKCDAVIVGGGTVRADNPLLTSR--EKLDFEPLRVVFSKTLNLPQSA 238

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           K+  T +   +I      D     +        +  +  +  +LL+ L  +G   +L E 
Sbjct: 239 KLWDTKIARTIIAYGPEGDESF-FSDLPNGPEKLRLNSNNPSELLSSLAKKGCNKILWEC 297

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSD 349
           G  +A S I +  V  ++++ +  ++G     SPL     E             D  G D
Sbjct: 298 GPQLATSAIEANCVQELVVFVAPKLLGGMSSMSPLNNFGFESISSSYKLQHSFLDRKGED 357

Query: 350 VCLEYI 355
           +C   I
Sbjct: 358 ICWRLI 363


>gi|325924396|ref|ZP_08185931.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas
           gardneri ATCC 19865]
 gi|325545120|gb|EGD16439.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas
           gardneri ATCC 19865]
          Length = 364

 Score =  325 bits (834), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 124/362 (34%), Positives = 191/362 (52%), Gaps = 8/362 (2%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  ++ D R M+ ALR +      T  NP V C+IV+DG+ +G G     G  HAEV AL
Sbjct: 1   MSATADDHRCMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGAHAEVFAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AG  ARGATAYVTLEPC+HYGR+PPCA  +IE G+RRVV  + DP  +V+G G   L 
Sbjct: 61  RAAGALARGATAYVTLEPCAHYGRTPPCALALIEAGVRRVVAAMADPFPQVNGGGFALLR 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI ++  +M+++ ++    +L+R    R  + +K+  S D    +A   S  ITG  +
Sbjct: 121 EAGIEVLSGVMQAQARVLNQGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITGADA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-SPMRIILDPHFKLSLDSKIIK 238
           +  V   RA++ AIL G GTVLADDP +T RL        P+R++LD   +      I +
Sbjct: 181 RADVQRWRARAGAILTGAGTVLADDPSMTVRLGDDTPFVPPLRVVLDAGLRTLACENIRQ 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
               AP + V  +D    +L   +     ++    DL  +L  L  RG+  + VE GA +
Sbjct: 241 GN--APTLYVHGDDVLPRSLDVAQFVAMPLHAGRFDLSAVLASLAERGINEVHVEAGATL 298

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           + + +++ LVD +++Y + +++G+   P      +E          +     G D+ L Y
Sbjct: 299 SGALLHAGLVDELLVYMAPVLLGDTARPLLAGLGIETMAQRHPLQLLDVRQLGQDLRLRY 358

Query: 355 IG 356
           + 
Sbjct: 359 VP 360


>gi|325276595|ref|ZP_08142337.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. TJI-51]
 gi|324098274|gb|EGB96378.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. TJI-51]
          Length = 376

 Score =  325 bits (834), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 129/366 (35%), Positives = 190/366 (51%), Gaps = 20/366 (5%)

Query: 1   MPVSS--FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
           MP  +   DA +M+ AL  +R  +  T  NP V C+IV+DG V+G G     G PHAEV 
Sbjct: 1   MPSQAAILDAHYMARALELARKGLFTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVH 60

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           AL +AGE ARGA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV  + DP+ +V+GRGL+ 
Sbjct: 61  ALRQAGERARGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGRGLRR 120

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L++ GI +   ++E+E +     +L R      ++  K+A+S D    MA   S  ITG 
Sbjct: 121 LAEAGIEVASGVLEAEARALNPGFLKRMEHGVPYVRAKLAMSLDGRTAMASGESQWITGP 180

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPH 227
            +++ V  LRA+S  +L    +VLAD+  +T R + L              P+R+++D  
Sbjct: 181 AARSAVQRLRARSSVVLTSAASVLADNARMTVRGSELGLDAETTALALSRPPLRVLVDGR 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTE-NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286
            +L LD+   +     P ++VT   DDP  A A  +           DL  LL  L  RG
Sbjct: 241 LRLPLDAPFFQ---AGPALVVTAVADDPGYAAAGHELLCLPGDNGQVDLAALLHALGARG 297

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRR 343
           V  +L+E GA++  +F    LVD   L+ +   +G    P    P+E             
Sbjct: 298 VNEVLLEAGASLVGAFARLGLVDEYQLFVAGTFLGSHARPLLDWPMERMSEAPRLKITEM 357

Query: 344 DYFGSD 349
              G D
Sbjct: 358 RAVGDD 363


>gi|149927761|ref|ZP_01916013.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
           C-terminal [Limnobacter sp. MED105]
 gi|149823587|gb|EDM82817.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
           C-terminal [Limnobacter sp. MED105]
          Length = 377

 Score =  325 bits (834), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 119/374 (31%), Positives = 185/374 (49%), Gaps = 18/374 (4%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             S  D  +M  AL  +      T+ NP V C+ V+DG+ I  G  A  G  HAEVQA+ 
Sbjct: 3   TFSPTDEHWMQHALNLAWKGQYSTTPNPRVGCVFVRDGVAIAEGFHAKAGEGHAEVQAIA 62

Query: 62  EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           ++   G    G+TAYVTLEPC+H+GR+ PCA+ ++  G+ RVV  V DP+  VSG+G+  
Sbjct: 63  DSRARGVSLAGSTAYVTLEPCAHHGRTGPCAEALVATGVARVVAAVLDPNPLVSGKGMAI 122

Query: 119 LSQKGIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L   GI     +  E   +    + +R   +R  + LK+A S D +  +    S  ITG 
Sbjct: 123 LQAAGIETAHGVLIEQARWINRGFFSRMERQRPWVRLKVASSADGISALNNGASQWITGE 182

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            ++   H LRAQ+ A+L GIGTV AD+P+L  R     E  P+++I+D   ++S D++++
Sbjct: 183 AARLHGHHLRAQACAVLSGIGTVKADNPQLNVR-GIDTERQPLKVIVDSKLEISPDARLL 241

Query: 238 K--------TALLAPVIIVT-ENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGV 287
           +        T    P  + T  N   + AL        +     + DL +LL  L  RG+
Sbjct: 242 QSGRVLIAHTEPHRPGWLTTHPNAANIEALNVAPVAAGLHAGKVKTDLLRLLQELAQRGI 301

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK---NFMCVRRD 344
             L +E G  +  SF+ + LVD I+ Y +   +G G     L E        ++     +
Sbjct: 302 NELHLEAGFGLNGSFLQAGLVDEIVQYIAPRFLGPGQGLFRLPELEALPAYVSWAIQSFE 361

Query: 345 YFGSDVCLEYIGKN 358
             G D+ + ++  N
Sbjct: 362 QIGPDLRITWVQNN 375


>gi|301335276|ref|ZP_07223520.1| riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis L2tet1]
          Length = 375

 Score =  325 bits (834), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 108/329 (32%), Positives = 162/329 (49%), Gaps = 5/329 (1%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S     FM  A+            NP V C+IVK+G VIG G     G PHAEV A+++
Sbjct: 4   LSEQQLFFMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQD 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                 GA  YVTLEPC H+GR+PPC   +I+  +  V V + DPD RV  +G+  L   
Sbjct: 64  QKCSLEGAEVYVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAA 123

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   +   E K  L  YL ++      + +K A S D      G  S  I+G +++ 
Sbjct: 124 GIPVYVGVGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARA 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKT 239
            V  LRA+S AI+VG  TV  D+P L+ R     L E  P+R+++D    + L+S++   
Sbjct: 184 DVGKLRAESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDL 243

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297
           +  + +   T+          +   + +        DLK LL  LV RG   +LVEGGA 
Sbjct: 244 SSGSTLFATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLVERGCLQVLVEGGAQ 303

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           +  +F   +LV++ ++Y     +G+ G P
Sbjct: 304 LHSAFWQQKLVNAGVIYWGPKFLGDQGQP 332


>gi|237803160|ref|YP_002888354.1| Riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis B/Jali20/OT]
 gi|231274394|emb|CAX11189.1| Riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis B/Jali20/OT]
          Length = 375

 Score =  325 bits (834), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 111/363 (30%), Positives = 171/363 (47%), Gaps = 10/363 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S     FM  A+            NP V C+IVK+G VIG G     G PHAEV A+++
Sbjct: 4   LSEQQLFFMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQD 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                 GA  +VTLEPC H+GR+PPC   +I+  +  V V + DPD RV  +G+  L   
Sbjct: 64  QKCSLEGAEVFVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAA 123

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   +   E K  L  YL ++      + +K A S D      G  S  I+G +++ 
Sbjct: 124 GIPVYVGVGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARA 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKT 239
            V  LRA+S AI+VG  TV  D+P L+ R     L E  P+R+++D    + L+S++   
Sbjct: 184 DVGKLRAESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDL 243

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297
           +  + +   T+          +   + +        DLK LL  L  RG   +LVEGGA 
Sbjct: 244 SSGSTLFATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLAERGCLQVLVEGGAQ 303

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSP--LEEGYLEKNFMCVRRDYFGSD---VCL 352
           +  +F   +LV++ ++Y     +G+ G P    L+   +    + +       D    C 
Sbjct: 304 LHSAFWQQKLVNAGVIYWGPKFLGDQGQPMLRDLQLSLVTAEHVRITETSLVRDSVKTCF 363

Query: 353 EYI 355
           EY+
Sbjct: 364 EYL 366


>gi|255003850|ref|ZP_05278651.1| riboflavin biosynthesis protein (ribD) [Anaplasma marginale str.
           Virginia]
          Length = 360

 Score =  325 bits (833), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 138/353 (39%), Positives = 195/353 (55%), Gaps = 11/353 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAG 64
            D RFMS ALR +   +G T  NP+V C++    G ++GRG TA GG PHAEV AL++AG
Sbjct: 3   DDERFMSIALRLAHRGLGNTYPNPTVGCVVTNSAGSIVGRGWTAMGGRPHAEVVALKQAG 62

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E A G+T YVTLEPC H+G++ PC   +I  G+RRVV+   DPD RVSG+G + L+  G+
Sbjct: 63  EAAAGSTVYVTLEPCCHHGQTGPCTAALISAGVRRVVIAALDPDKRVSGKGARSLADSGV 122

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   +++ + +     +   + ++R  IT+K+A + D  I +       IT  +++  V
Sbjct: 123 EVKLGVLQQQAEELNVGFFYSKTKRRPFITVKLATTLDGKISLPNGSDRWITNELTRKWV 182

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  RA  D I+VG  TV+ADDP L CRL GL+EHSP+RI++D   KL    K++ T+ + 
Sbjct: 183 HKQRAMHDGIMVGSNTVVADDPMLDCRLPGLEEHSPIRIVIDRSGKLCSHHKVVATSDVV 242

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGR-GVTSLLVEGGAAVAHS 301
           P  I T+NDD     A R   I    C+  D L   +  L    G+T L VEGG  +   
Sbjct: 243 PTYIATDNDDHKALHAVRYLRI----CERGDFLAGTMNALAEELGITRLFVEGGGVLVTE 298

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK---NFMCVRRDYFGSDVC 351
            +   LVD  I  R+  V GE G+ S L    L     +F  V+   F  D  
Sbjct: 299 LLKRGLVDQFIWCRANRVCGEQGVESILNLNELPSGHCHFSRVKTLTFMEDTV 351


>gi|297748861|gb|ADI51407.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Chlamydia
           trachomatis D-EC]
 gi|297749741|gb|ADI52419.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Chlamydia
           trachomatis D-LC]
          Length = 400

 Score =  325 bits (833), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 106/329 (32%), Positives = 161/329 (48%), Gaps = 5/329 (1%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S     FM  A+            NP V C+IVK+G VIG G     G PHAEV A+++
Sbjct: 29  LSEQQLFFMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQD 88

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                 GA  +VTLEPC H+GR+PPC   +I+  +  V V + DPD RV  +G+  L   
Sbjct: 89  QKCSLEGAEVFVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAA 148

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   +   E K  L  YL ++      + +K A S D      G  S  I+G +++ 
Sbjct: 149 GIPVYVGVGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARA 208

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKT 239
            V  LRA+S AI+VG  TV  D+P L+ R     L E  P+R+++D    + L+S++   
Sbjct: 209 DVGKLRAESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDL 268

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297
           +  + +   T+          +   + +        DLK LL  L  RG   +LVEGGA 
Sbjct: 269 SSGSTLFATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLAERGCLQVLVEGGAQ 328

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           +  +F   +LV++ ++Y     +G+ G P
Sbjct: 329 LHSAFWQQKLVNAGVIYWGPKFLGDQGQP 357


>gi|229542331|ref|ZP_04431391.1| riboflavin biosynthesis protein RibD [Bacillus coagulans 36D1]
 gi|229326751|gb|EEN92426.1| riboflavin biosynthesis protein RibD [Bacillus coagulans 36D1]
          Length = 370

 Score =  325 bits (833), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 121/354 (34%), Positives = 182/354 (51%), Gaps = 12/354 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M  AL  +    G TS NP V  ++VK+G + G       G  HAE  A+E+AG  A
Sbjct: 4   EDYMQLALHLAESVAGQTSPNPPVGSVVVKNGTIAGMAAHLKAGEKHAERLAVEQAGPLA 63

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            GA  +VTLEPC+HYG++PPCA F+IE GI+ V +   DP+  V+G+G++ L Q G+ V+
Sbjct: 64  EGAEVFVTLEPCAHYGKTPPCADFLIEKGIKTVYIAALDPNPLVAGKGIEKLRQAGVKVE 123

Query: 128 RMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +  E    L   +      K   +T+K A++ D  I      S  IT   ++     L
Sbjct: 124 TGILKEQAEKLYRPFFHFIQTKTPFVTVKTAMTADGKIASETRDSKWITSEEARRDARRL 183

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R++ DAILVGI TVL D+P LT RL   +  +P+RI+LD H ++  ++K++     AP I
Sbjct: 184 RSRHDAILVGIQTVLHDNPLLTTRLPHSR-KNPIRIVLDTHLRIPPEAKVLSGD--APTI 240

Query: 247 IVTENDDP-VLALAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           I   +D P       ++ ++ ++      L  + +L  L  +G+ +LLVEGGAAV  SF+
Sbjct: 241 IFCGSDAPKEKEQCLKQLDVEVVRMPHARLLIRDVLAALGEKGIMTLLVEGGAAVNGSFL 300

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
               V   I Y +  VIG    PSP       K          + +  G D+ +
Sbjct: 301 KEGAVQQYIFYIAPKVIGGKNAPSPFGGHGFGKVADALPLRFEKVEQIGPDLKI 354


>gi|50083525|ref|YP_045035.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Acinetobacter sp. ADP1]
 gi|49529501|emb|CAG67213.1| bifunctional protein [Includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (Riboflavin-specific deaminase);
           5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
           reductase) ] [Acinetobacter sp. ADP1]
          Length = 362

 Score =  325 bits (833), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 123/366 (33%), Positives = 189/366 (51%), Gaps = 19/366 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M     D  +MS AL  ++     T  NP+V C+IVKD  ++GRG TA  G PHAEV AL
Sbjct: 1   MSEQERDHYWMSQALALAKTAQFRTRPNPAVGCVIVKDQHIVGRGSTAPVGGPHAEVFAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAG +A+ ATAYVTLEPCSHYGR+PPCA  +IE G+ RVV+   DP+  V+G+G   L+
Sbjct: 61  REAGVQAQNATAYVTLEPCSHYGRTPPCANALIEAGVSRVVIATLDPNPLVAGKGQTMLN 120

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           Q GI     ++E + +     +L        ++ LK+A S D    MA   S  ITG  +
Sbjct: 121 QAGITTQVGVLEEQAQELNRGFLKVMAGGLPYVRLKVASSLDGRTAMASGESKWITGVDA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQE----HSPMRIILDPHFKLSLDS 234
           +  V   RA+S AI+ G+ TVLADD +L  R L  + +      P RIILD   +L L +
Sbjct: 181 RLDVQYWRARSGAIITGVDTVLADDCQLNVRALPDVDDLSEIVQPKRIILDRQGRLPLTA 240

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVE 293
           K+++       ++V               ++ ++      L++LL  +     +  +++E
Sbjct: 241 KLLQ---HPETVVVMG------PFRQELADLGVVQFPVLPLQQLLEHIAKEHHIYDVMIE 291

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350
            GA ++ +F+   LVD +I Y +  ++G        + L++   +  F  +     G D+
Sbjct: 292 AGATLSTAFLQEDLVDEVISYVAPTLLGCSARAMFNAELDKMAQQLRFELIDLTQLGQDI 351

Query: 351 CLEYIG 356
            L  + 
Sbjct: 352 RLRLVP 357


>gi|148545799|ref|YP_001265901.1| riboflavin biosynthesis protein RibD [Pseudomonas putida F1]
 gi|148509857|gb|ABQ76717.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Pseudomonas putida F1]
          Length = 376

 Score =  324 bits (832), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 126/366 (34%), Positives = 188/366 (51%), Gaps = 20/366 (5%)

Query: 1   MPVSS--FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
           MP  +   DA +M+ AL  +R  +  T  NP V C+IV+DG V+G G     G PHAEV 
Sbjct: 1   MPSQAAILDAHYMARALELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVH 60

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           AL +AGE ARGA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV  + DP+ +V+G+GL+ 
Sbjct: 61  ALRQAGELARGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGLRR 120

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L++ GI +   ++E+E +     +L R       +  K+A+S D    MA   S  ITG 
Sbjct: 121 LAEAGIEVASGVLEAEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGP 180

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPH 227
            +++ V  LRA+S  +L    +VLAD+  +T R   L             +P+R+++D  
Sbjct: 181 AARSAVQRLRARSSVVLTSAASVLADNARMTVRGAELGLDAETAALALSRTPLRVLVDGR 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTE-NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286
            +L L +   +     P ++VT   DDP  A A  +           DL  LL  L  RG
Sbjct: 241 LRLPLAAPFFQ---AGPTLVVTAVADDPRYAAAGHELLSLPGDNGQVDLGALLHALAARG 297

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRR 343
           V  +L+E GA +  +F    LVD   L+ +   +G    P    P+++            
Sbjct: 298 VNEVLLEAGAGLVGAFARQGLVDEYQLFVAGTFLGSQARPLLDWPMDKMSEAPRLKITEM 357

Query: 344 DYFGSD 349
              G D
Sbjct: 358 RAVGDD 363


>gi|328543537|ref|YP_004303646.1| Bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
           reductase [polymorphum gilvum SL003B-26A1]
 gi|326413281|gb|ADZ70344.1| Bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Polymorphum gilvum SL003B-26A1]
          Length = 388

 Score =  324 bits (832), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 158/368 (42%), Positives = 217/368 (58%), Gaps = 14/368 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPHAEVQAL 60
             D R+M+AA+  +R  +G    NPSV  LIV D     +V+GRGVT+  G PHAEV AL
Sbjct: 20  DIDRRYMAAAVALARRGLGRVWPNPSVGALIVADTGGAPVVVGRGVTSPPGGPHAEVNAL 79

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AG+ ARGAT YVTLEPCSH+GR+PPC+  ++  G+RRVV+ + DP+ RVSGRG+  L 
Sbjct: 80  RQAGDRARGATCYVTLEPCSHHGRTPPCSAALVSAGVRRVVIGIADPNRRVSGRGIGMLR 139

Query: 121 QKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI V   +E+     LH  +  R + +R  +TLK+A+S D  IG  G G + ITG +S
Sbjct: 140 DAGIAVTVGVEAVACRDLHLGHSLRVLAQRPAVTLKLALSADGFIGRLGAGQIAITGSLS 199

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           K   H +RA+SD ILVG+GTVLADDP+LTCRL GL+  SP+R++LDP+ +L L S+++++
Sbjct: 200 KRFAHGIRARSDGILVGVGTVLADDPQLTCRLPGLEGRSPVRVVLDPNARLPLGSRLVRS 259

Query: 240 ALLAPVIIVTEN-DDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEG 294
           A   PV  V  N  DP    A  +  + II         D    LT L  RG+T ++VEG
Sbjct: 260 AAEVPVWAVVANAADPDRLGALARAGVLIIRVPAGPEGIDPLVALTALSARGITRVMVEG 319

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDV 350
           G+ VA +F+ + +VD   L      +G GG+     EG         F  V    +G D 
Sbjct: 320 GSRVAAAFLRADMVDEAWLVHGPASLGAGGVLPFGAEGADALAGTGRFHVVETGIWGEDH 379

Query: 351 CLEYIGKN 358
            + Y  K 
Sbjct: 380 YVRYRRKE 387


>gi|55981033|ref|YP_144330.1| diaminohydroxyphosphoriboxylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase RibD [Thermus thermophilus HB8]
 gi|55772446|dbj|BAD70887.1| diaminohydroxyphosphoriboxylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase (RibD)
           [Thermus thermophilus HB8]
          Length = 377

 Score =  324 bits (832), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 109/377 (28%), Positives = 185/377 (49%), Gaps = 23/377 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   D RF+  AL+ +    G TS NP V  ++V++G ++G G     G PHAEV AL++
Sbjct: 1   MRDLDERFLRRALQLAERARGHTSPNPLVGAVLVREGRIVGEGFHPRAGEPHAEVFALQQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPC H+GR+PPC+  +++ G+ RVVV   + +  V+  GL+ L   
Sbjct: 61  AGELARGATAYVTLEPCDHFGRTPPCSLALLQAGVSRVVVAAREENP-VAKGGLERLRAG 119

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +   ++E+E +     +   Q +    + LK A++ D  +      +  I+   S+ 
Sbjct: 120 GVQVEAGLLEAEARAQNEVFFAVQKKGLPFVLLKAALTLDGKVAAPSGDARWISSEASRR 179

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFKLS 231
             H  R    A++VG+GTVL DDP LT R    +             P++++LD   +  
Sbjct: 180 VAHAYRQWLPAVMVGVGTVLKDDPALTVREPDFRPFPLMVEPPPLRDPLKVVLDTEARTP 239

Query: 232 LDSKIIKTALLAP----VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILV 283
             +++ +          ++ V E        A  +    ++         D ++ L  L+
Sbjct: 240 PTARLFRKGPRGEPARVLVFVGEGAPGARVSALEEAGARVVALPREGGRVDPERALAFLL 299

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMC 340
             GV  +L+EGG  +A +F+   LVD + L+ +  ++GEG   +    +E          
Sbjct: 300 EEGVDGVLLEGGPRLAGAFLERGLVDKLALFLAPRILGEGRGLAEGFRVERVAEALRLRL 359

Query: 341 VRRDYFGSDVCLEYIGK 357
            RR++ G ++ LE   +
Sbjct: 360 ARREWLGENLWLEAYPE 376


>gi|283779657|ref|YP_003370412.1| riboflavin biosynthesis protein RibD [Pirellula staleyi DSM 6068]
 gi|283438110|gb|ADB16552.1| riboflavin biosynthesis protein RibD [Pirellula staleyi DSM 6068]
          Length = 373

 Score =  324 bits (832), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 123/361 (34%), Positives = 190/361 (52%), Gaps = 14/361 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62
           ++ D  FM  A+  +   +GL   NP V C+IV   G V+GRG     G PHAEV+AL++
Sbjct: 9   AASDEAFMREAIELAERGLGLVEPNPMVGCVIVSPRGEVVGRGWHGRFGGPHAEVEALQQ 68

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE+ARG+T YVTLEPCSH+G++PPCA  +I  G+ RVV  + DP  +V G G   L   
Sbjct: 69  AGEQARGSTLYVTLEPCSHFGKTPPCADAVIAAGVARVVAAMTDPFPKVQGGGFAKLRSA 128

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   + E+E +     YL         +  K A++ D  I      S  I+   S+ 
Sbjct: 129 GIAVESGVCEAEARALCAPYLKLVTRGMPWVIAKWAMTLDGKIATRSGYSQWISCSQSRE 188

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH +R + D I+VG  TV  DDP LT R  G  + +P RI+LD   +L   +++++TA 
Sbjct: 189 LVHGIRGRVDGIMVGRRTVELDDPLLTARPPG--KRTPARIVLDSQARLQNSTQLVRTAR 246

Query: 242 LAPVIIVTE-NDDPVLALAFRKKNINIIY----CDCRDLKKLLTILVGRGVTSLLVEGGA 296
            +PV++VT    D             ++          L +LL+ L  R +T++LVEGGA
Sbjct: 247 QSPVLVVTGPEADDKEIRRLSMAGCEVLPFLAATHFERLLELLSELGRRQMTNILVEGGA 306

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVC 351
            +  S +++RLVD + ++ +  + G    P P+    +E+         ++ D  G+D+ 
Sbjct: 307 KLLGSLLDARLVDEVHVFIAPKLFGGERAPGPVAGAGVEQVASALELRNLKIDQIGTDLY 366

Query: 352 L 352
           +
Sbjct: 367 V 367


>gi|46199007|ref|YP_004674.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Thermus thermophilus HB27]
 gi|46196631|gb|AAS81047.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Thermus thermophilus HB27]
          Length = 377

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 110/377 (29%), Positives = 184/377 (48%), Gaps = 23/377 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   D RF+  AL+ +    G TS NP V  ++V++G ++G G     G PHAEV AL E
Sbjct: 1   MRDLDERFLRRALQLAERARGHTSPNPLVGAVLVREGRIVGEGFHPRAGEPHAEVFALRE 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPC H+GR+PPC+  +++ G+ RVVV   + +  V+  GL+ L   
Sbjct: 61  AGELARGATAYVTLEPCDHFGRTPPCSLALLQAGVSRVVVAAREENP-VAKGGLERLRVG 119

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +   ++E+E +     +   Q +    + LK A++ D  +      +  I+   S+ 
Sbjct: 120 GVQVEAGLLEAEARAQNEVFFAVQKKGLPFVLLKAALTLDGKVAAPSGDARWISSEASRR 179

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFKLS 231
             H  R    A++VG+GTVL DDP LT R    +             P++++LD   +  
Sbjct: 180 VAHAYRQWLPAVMVGVGTVLKDDPALTVREPDFRPFPLMVEPPPLRDPLKVVLDTEARTP 239

Query: 232 LDSKIIKTALLAP----VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILV 283
             +++ +          ++ V E        A  +    ++         D ++ L  L+
Sbjct: 240 PTARLFRKGPRGEPARVLVFVGEGAPRARVSALEEAGARVVALPREGGRVDPERALAFLL 299

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMC 340
             GV  +L+EGG  +A +F+   LVD + L+ +  ++GEG   +    +E          
Sbjct: 300 EEGVDGVLLEGGPRLAGAFLERGLVDKLALFLAPRILGEGRGLAEGFRVERVAEALRLRL 359

Query: 341 VRRDYFGSDVCLEYIGK 357
            RR++ G ++ LE   +
Sbjct: 360 ARREWLGENLWLEAYPE 376


>gi|70728414|ref|YP_258163.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens Pf-5]
 gi|68342713|gb|AAY90319.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens Pf-5]
          Length = 368

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 117/360 (32%), Positives = 177/360 (49%), Gaps = 8/360 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D + M  AL  +      T  NP V C+I     V+G G     G PHAEV AL +
Sbjct: 4   FSEVDFQHMQHALSLAERGSHSTWPNPRVGCVIAHGSQVVGEGWHRRAGGPHAEVFALRQ 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  ARGATAYVT+EPCSH GR+  C Q +I+ G+  VVV   DP  +V+G+G+  L   
Sbjct: 64  AGGLARGATAYVTMEPCSHVGRTGACHQALIDSGVHSVVVAHQDPFEQVNGQGIAQLRNA 123

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++ES  +     +L+    +R  + LK+ +S D    +    S  IT   ++ 
Sbjct: 124 GIEVRVGLLESAAQELNRGFLSTVRRQRPWVQLKMGMSLDGRTALDNGRSKWITSTRARA 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            V   RA+S AIL G GTVLADDP LT R L+  +  +P+R++LD   ++   +++    
Sbjct: 184 DVQYWRARSSAILTGSGTVLADDPLLTVRQLSSPEALAPVRVVLDSQGRVPATARVFND- 242

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
             AP + V   + P+ +    +            L++LL  L  RG+  LLVE G  +A 
Sbjct: 243 -QAPSLHVVHRECPLASSDSEQVMALPGDDQGLHLEQLLHNLSQRGLHDLLVEAGPTLAG 301

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
           + + + LVD ++LY +  ++G+   P       +      +F        G D+ L    
Sbjct: 302 NLLKAHLVDELLLYVAPRLLGDLARPLVHLPCFDRLEEALDFALYDVSQLGPDLRLRLRP 361


>gi|294341030|emb|CAZ89425.1| Riboflavin biosynthesis protein ribD [Includes:
           Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (Riboflavin-specific deaminase);
           5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
           reductase)] [Thiomonas sp. 3As]
          Length = 387

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 121/373 (32%), Positives = 188/373 (50%), Gaps = 24/373 (6%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             S  D RFM  AL  +   +  TS NP V C++V+DG V+G G T   G  HAEVQA++
Sbjct: 7   SFSEQDQRFMRRALDLAHSAMYRTSPNPRVGCVLVRDGQVLGEGATLAAGQDHAEVQAVK 66

Query: 62  EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           +A   G E RGATAYVTLEPC+H+GR+PPCA  +   G+ RVV  + DP+  V+G+GLQ 
Sbjct: 67  QAWERGHEVRGATAYVTLEPCAHHGRTPPCADLLATQGVARVVAALVDPNPLVAGQGLQR 126

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L   GI +   +   E +     +++R V     + LK+A S D +  +    S  IT  
Sbjct: 127 LRDAGIQVDVGLFADEAREINLGFISRMVRGTPWVRLKVAASLDGVTALPNGTSQWITSE 186

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            ++   H  RA++ A+L G+GTV ADDP+L  R        P+RI++D   +     +++
Sbjct: 187 AARADGHHWRARACAVLTGLGTVRADDPQLNVR-AVQTPRQPIRIVVDSRLECPATVRLL 245

Query: 238 KTALLAPVIIVT----ENDDPVLALAFRKKNINIIYCD-----------CRDLKKLLTIL 282
           ++A  +P+ IV     E   P LA        ++   D             DL+ L+ +L
Sbjct: 246 QSA-DSPLWIVHALPPEQAAPRLAALRSAATASLDLQDIALPVDPDKPGKTDLRALMQVL 304

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG---GIPSPLEEGYLEKNFM 339
             RG+  L  E G  +  S + + +VD +++Y +  ++GEG       P ++        
Sbjct: 305 GQRGINELHCEAGEKLNGSLLRAGVVDELLMYLAPQLLGEGAGLAALGPYQQVNEGLALR 364

Query: 340 CVRRDYFGSDVCL 352
                  G+D+ +
Sbjct: 365 WHDVQRIGADLRI 377


>gi|89894408|ref|YP_517895.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Desulfitobacterium hafniense Y51]
 gi|89333856|dbj|BAE83451.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Desulfitobacterium hafniense Y51]
          Length = 372

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 128/351 (36%), Positives = 191/351 (54%), Gaps = 9/351 (2%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D  +MS AL  +   +G TS NP V C+IVKDG+++G G     G PHAEV AL+ AG
Sbjct: 9   ELDNHYMSRALELAALAMGRTSPNPLVGCVIVKDGVIVGEGYHQKAGTPHAEVHALQAAG 68

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGATAYVTLEPCSH+G++PPCA  +I+ GI+RVVV + DP+  VSG+G+  L   GI
Sbjct: 69  EHARGATAYVTLEPCSHFGKTPPCADALIKAGIQRVVVAMVDPNPLVSGQGITRLRAAGI 128

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   + E E +     +L         +  K A++ D  I      S  ++   S+  V
Sbjct: 129 QVDVGLKEKEARTLNKGFLKAMQTGLPFVLYKSALTLDGKIATESGDSKWVSNEASRAYV 188

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H LR   D I+VG  TV  D+P L CR++  +   P+R+++D   ++ L + ++ ++  A
Sbjct: 189 HRLRDHFDVIMVGSETVRQDNPALNCRID--EGRDPVRLLVDGALQIPLQAAVLASSCTA 246

Query: 244 PVIIVTENDDPVLALAFRK--KNINIIYCDC---RDLKKLLTILVGRGVTSLLVEGGAAV 298
           P +I T    P+  L   +  +N+ +   D      LK LL  LV RG  S+L+EGG  +
Sbjct: 247 PCLIATTASAPLDKLKALRALENVEVWQYDSPRYVPLKDLLGDLVKRGWNSVLLEGGGGL 306

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           A S + ++L+D +    +  +IG  G PSPL    L      +  ++   D
Sbjct: 307 AGSLLRAQLIDEVEFIYAPKLIGGKG-PSPLSGLELPLMAQAIPLEFLEID 356


>gi|239617610|ref|YP_002940932.1| riboflavin biosynthesis protein RibD [Kosmotoga olearia TBF 19.5.1]
 gi|239506441|gb|ACR79928.1| riboflavin biosynthesis protein RibD [Kosmotoga olearia TBF 19.5.1]
          Length = 345

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 122/362 (33%), Positives = 180/362 (49%), Gaps = 23/362 (6%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63
            D +FM  A+  +R   GL + NP V  +IVK+G ++  G   Y G  HAE+ A+E A  
Sbjct: 1   MDEKFMELAIEEARKGEGLVNPNPLVGAVIVKNGKILSTGYHEYFGGRHAEIVAIENAKK 60

Query: 64  -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
            G + +GA  YVTLEPC HYG++PPC   II  G   V +   DP+  V G+G + L   
Sbjct: 61  MGYDIKGAEIYVTLEPCVHYGKTPPCTDRIIREGFSAVYIGTLDPNPMVHGKGEEKLKNA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E + K  +  +      K   + LK+A+S D  I         IT   ++ 
Sbjct: 121 GICVKHGILEVKAKELIEVFAKYMKTKMPFVALKLAMSLDGFITSMRGKRERITSDRARE 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL-SLDSKIIKTA 240
           +VH LR    AI++G  T ++DDP LTCR +  +  +P+RIILD   K   ++ K+   A
Sbjct: 181 KVHRLRNYYSAIMIGSKTAISDDPLLTCRYSFCK-RNPIRIILDRSGKTAKVNLKLF--A 237

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
                II T +++         +N+ +I  D    + +L  L   G+ S+LVEGGA VA 
Sbjct: 238 QEGRTIIFTSSNER------WPENVEVIRKDDLSPEPILKALGKMGIDSVLVEGGANVAS 291

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
            FI     D I L+ + I  G G   SP +  +  K F   R + +  D+  E I    C
Sbjct: 292 QFI--NYADKIHLFYAPIAFGNG--LSPFDRKF--KGFTTKRVEVYHPDIYWELIP---C 342

Query: 361 LQ 362
            Q
Sbjct: 343 SQ 344


>gi|167031576|ref|YP_001666807.1| riboflavin biosynthesis protein RibD [Pseudomonas putida GB-1]
 gi|166858064|gb|ABY96471.1| riboflavin biosynthesis protein RibD [Pseudomonas putida GB-1]
          Length = 376

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 125/365 (34%), Positives = 185/365 (50%), Gaps = 18/365 (4%)

Query: 1   MPVSS--FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
           MP  +   DA +M+ AL  +R  +  T  NP V C+IV+DG V+G G     G PHAEV 
Sbjct: 1   MPSQAAVLDAHYMARALELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVH 60

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           AL +AGE A GA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV  + DP+ +V+G+GLQ 
Sbjct: 61  ALRQAGERAIGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGLQR 120

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L++ GI +   ++E+E +     +L R       +  K+A+S D    MA   S  ITG 
Sbjct: 121 LAEAGIEVASGVLETEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGP 180

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPH 227
            +++ V  LRA+S  +L    +VLAD+  +T R   L             +P+R+++D  
Sbjct: 181 AARSAVQRLRARSSVVLTSAASVLADNARMTVRGTELGLDAETTALALSRTPLRVLVDSR 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
            +L LD+   +      +++    DDP  A A  +           DL  LL  L  RGV
Sbjct: 241 LRLPLDAAFFQAGPA--LVVAAVADDPRYAAAGHELLSLPGDNGQVDLPALLQALAARGV 298

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRD 344
             +L+E GA +  +F    LVD   L+ +   +G    P    PL +             
Sbjct: 299 NEILLEAGAGLVGAFAQQGLVDEYQLFVAGTFLGSQARPLLDWPLGKMSEAPRLKITEMR 358

Query: 345 YFGSD 349
             G D
Sbjct: 359 AVGDD 363


>gi|121729759|ref|ZP_01682198.1| riboflavin biosynthesis protein RibD [Vibrio cholerae V52]
 gi|147673692|ref|YP_001217785.1| riboflavin biosynthesis protein RibD [Vibrio cholerae O395]
 gi|121628510|gb|EAX60996.1| riboflavin biosynthesis protein RibD [Vibrio cholerae V52]
 gi|146315575|gb|ABQ20114.1| riboflavin biosynthesis protein RibD [Vibrio cholerae O395]
 gi|227014167|gb|ACP10377.1| riboflavin biosynthesis protein RibD [Vibrio cholerae O395]
          Length = 367

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 120/374 (32%), Positives = 179/374 (47%), Gaps = 27/374 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGHFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +AGE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+G+G+Q L
Sbjct: 61  MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++E++ ++    +L R       + LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLEADARVLNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R                   P+R+ILD  
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
            +L  +  + +T   +PV+ V   +  +   A   K                       V
Sbjct: 241 HQLHPELALYQTP--SPVLRVASENAELCISAENGKLDLRELLALLA--------QQHNV 290

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRR 343
             L VE G+ +A S I  +LVD IILY +  ++G  G       G  E            
Sbjct: 291 NQLWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDC 350

Query: 344 DYFGSDVCLEYIGK 357
              G+D+ +    K
Sbjct: 351 RMVGADLRIIATPK 364


>gi|167816999|ref|ZP_02448679.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 91]
          Length = 369

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 114/354 (32%), Positives = 173/354 (48%), Gaps = 13/354 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
           M  AL  +   +  T+ NP V C+IVKD +VIG G T   G  HAEVQAL++A   G + 
Sbjct: 1   MQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDARARGNDL 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           R AT YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L   GI + 
Sbjct: 61  RDATVYVTLEPCSHFGRTPPCAHTLIDARVGKVVAAMEDPNPQVSGRGLAMLRDAGIDVR 120

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++  E       +++R    R  + +K A S D    +A   S  ITG  +++  H  
Sbjct: 121 CGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAARDDGHKW 180

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA++ AIL GIGTV  DDP+L  R        P R+++D    + L +++++   L    
Sbjct: 181 RARACAILTGIGTVREDDPQLNVR-GVDTPRQPRRVLIDSRLDIPLAARLLEGGSLLVFC 239

Query: 247 IVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
              +      A A R +   I+         DL  +L  L  RG+  L VE G  +  S 
Sbjct: 240 GALDAQSEPRADALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEAGHKLNGSL 299

Query: 303 INSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCL 352
           +  R VD +++Y +  ++G         +                +  G D+ +
Sbjct: 300 LRERCVDELLVYLAPSLLGADAAAMFDLAAPASLVDRTRLAFHSVERVGDDLRI 353


>gi|15605463|ref|NP_220249.1| riboflavin deaminase [Chlamydia trachomatis D/UW-3/CX]
 gi|237805081|ref|YP_002889235.1| Riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311561|ref|ZP_05354131.1| Riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis 6276]
 gi|255317862|ref|ZP_05359108.1| Riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis 6276s]
 gi|13633735|sp|O84735|RIBD_CHLTR RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
           RecName:
           Full=Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase; Includes: RecName:
           Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|3329187|gb|AAC68325.1| Riboflavin Deaminase [Chlamydia trachomatis D/UW-3/CX]
 gi|231273381|emb|CAX10296.1| Riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|296436276|gb|ADH18450.1| Riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis G/9768]
 gi|296437205|gb|ADH19375.1| Riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis G/11222]
 gi|296438136|gb|ADH20297.1| Riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis G/11074]
 gi|297140637|gb|ADH97395.1| Riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           [Chlamydia trachomatis G/9301]
          Length = 375

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 106/329 (32%), Positives = 161/329 (48%), Gaps = 5/329 (1%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S     FM  A+            NP V C+IVK+G VIG G     G PHAEV A+++
Sbjct: 4   LSEQQLFFMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQD 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                 GA  +VTLEPC H+GR+PPC   +I+  +  V V + DPD RV  +G+  L   
Sbjct: 64  QKCSLEGAEVFVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAA 123

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   +   E K  L  YL ++      + +K A S D      G  S  I+G +++ 
Sbjct: 124 GIPVYVGVGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARA 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKT 239
            V  LRA+S AI+VG  TV  D+P L+ R     L E  P+R+++D    + L+S++   
Sbjct: 184 DVGKLRAESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDL 243

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297
           +  + +   T+          +   + +        DLK LL  L  RG   +LVEGGA 
Sbjct: 244 SSGSTLFATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLAERGCLQVLVEGGAQ 303

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           +  +F   +LV++ ++Y     +G+ G P
Sbjct: 304 LHSAFWQQKLVNAGVIYWGPKFLGDQGQP 332


>gi|76789470|ref|YP_328556.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chlamydia
           trachomatis A/HAR-13]
 gi|76168000|gb|AAX51008.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Chlamydia
           trachomatis A/HAR-13]
          Length = 375

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 106/329 (32%), Positives = 161/329 (48%), Gaps = 5/329 (1%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S     FM  A+            NP V C+IVK+G VIG G     G PHAEV A+++
Sbjct: 4   LSEQQLFFMRKAVALGEKGRIFAPPNPWVGCVIVKNGGVIGEGWHQGIGSPHAEVCAVQD 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                 GA  +VTLEPC H+GR+PPC   +I+  +  V V + DPD RV  +G+  L   
Sbjct: 64  QKCSLEGAEVFVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAA 123

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   +   E K  L  YL ++      + +K A S D      G  S  I+G +++ 
Sbjct: 124 GIPVYVGVGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARA 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKT 239
            V  LRA+S AI+VG  TV  D+P L+ R     L E  P+R+++D    + L+S++   
Sbjct: 184 DVGKLRAESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDL 243

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297
           +  + +   T+          +   + +        DLK LL  L  RG   +LVEGGA 
Sbjct: 244 SSGSTLFATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLAERGCLQVLVEGGAQ 303

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           +  +F   +LV++ ++Y     +G+ G P
Sbjct: 304 LHSAFWQQKLVNAGVIYWGPKFLGDQGQP 332


>gi|237755714|ref|ZP_04584322.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692135|gb|EEP61135.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 371

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 116/327 (35%), Positives = 166/327 (50%), Gaps = 10/327 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
             +M  AL  ++   GLT  NP+V  +IVKDG +IG+G     G PHAE +A+++A   G
Sbjct: 8   ESYMKIALDLAKIRKGLTHPNPTVGAVIVKDGKIIGKGYHTKAGMPHAEREAIKDAKEKG 67

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            + +G+T +VTLEPC HYGR+PPC   IIE GI  VV+   D +  V G+G+  L   GI
Sbjct: 68  HDLKGSTMFVTLEPCCHYGRTPPCTSAIIEEGISEVVIGALDQNPIVKGQGVNILKSHGI 127

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            ++  ++E E +     + T   EKR  + LK+A S D  I      S  IT   S+   
Sbjct: 128 KVITGVLEKECEKINEDFFTYIKEKRPFVHLKVAQSFDGKIATKIGDSKWITSEKSRQFA 187

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H LR ++ AILVG  T L D+P LT R     E  P R+++D   K+     I       
Sbjct: 188 HQLRKEASAILVGTNTALKDNPALTVRHVE-TEKQPARVLIDKKLKVPPTYNIYNNEAKT 246

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAV 298
            VI     +   L     K+N+ I++ D  +     +  +L  L  R +  LLVEGG  V
Sbjct: 247 IVITSKLANQENLKRLSEKENVEIVFLDLDENEKFKIDDILNTLYEREIVHLLVEGGRGV 306

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGI 325
               I  R  D I ++ + ++IG  GI
Sbjct: 307 ITDLIKERKFDKISIFTAPLLIGNDGI 333


>gi|319941823|ref|ZP_08016145.1| AMP deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Sutterella wadsworthensis 3_1_45B]
 gi|319804756|gb|EFW01623.1| AMP deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Sutterella wadsworthensis 3_1_45B]
          Length = 415

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 123/360 (34%), Positives = 181/360 (50%), Gaps = 17/360 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D  +M  AL  +R    ++  NPSV  +IV++G ++G G T   G PHAEV AL  A
Sbjct: 52  SAADDAWMDLALAQARKAWRISPPNPSVGAVIVRNGRLVGAGHTQRTGGPHAEVMALRSA 111

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G    GAT YVTLEPCSHYGR+PPCA  +I+  + RVV  V DP+ +V GRG++ L 
Sbjct: 112 FERGLSVEGATVYVTLEPCSHYGRTPPCALALIQSKVGRVVAAVGDPNPKVHGRGIRMLL 171

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI  +  + E+E +    A+LTR       + +K AV+ D         S  ITG  +
Sbjct: 172 EAGIPAELGVREAEAREVNIAFLTRMTRGTPWVRMKTAVTLDGRTAFPDGRSQWITGEAA 231

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  V   R ++ A+L GIGTVLADDP++  RL   QE  P+RI++DP  +     K++ T
Sbjct: 232 RADVQFWRGRAGAVLTGIGTVLADDPQMNVRLPD-QERQPLRIVIDPRMETPPAGKLL-T 289

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCD------CRDLKKLLTILVGRGVTSLLVE 293
           +    V I    + P    A       +            DL++L+  L  R V  + VE
Sbjct: 290 SKGGKVFIAAAAEYPTRRAALEAAGAEVWVLPDAAVPGRVDLRELMRELAKREVNEVHVE 349

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSD 349
            G  ++ +   + L+D ++ Y +  + G G     +P P E G     +     D  G D
Sbjct: 350 AGPRLSGALFAAGLIDEMLFYYAPCLFGAGMGPAAVPLPAEPGA-AYRWRLQSLDQIGGD 408


>gi|327484786|gb|AEA79193.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
           cholerae LMA3894-4]
          Length = 365

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 117/371 (31%), Positives = 177/371 (47%), Gaps = 26/371 (7%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A+ +
Sbjct: 2   FTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+G+G+Q L   
Sbjct: 62  AGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E++ ++    +L R      ++ LK+A S D    +A   S  IT   ++ 
Sbjct: 122 GIEVEVGLLEADARVLNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPAARK 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKL 230
            V   RAQ+ AIL    TVLAD+  L  R                   P+R+ILD   +L
Sbjct: 182 DVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQHQL 241

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
             +  + +T   +PV+ V   +  +   A   K                       V  +
Sbjct: 242 HPELALYQTP--SPVLRVASENAELCISAEHGKLDLRELLALLA--------QQHNVNQV 291

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYF 346
            VE G+ +A S I  +LVD IILY +  ++G  G       G  E               
Sbjct: 292 WVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMV 351

Query: 347 GSDVCLEYIGK 357
           G+D+ +    K
Sbjct: 352 GADLRIIATPK 362


>gi|254281521|ref|ZP_04956489.1| riboflavin biosynthesis protein RibD [gamma proteobacterium
           NOR51-B]
 gi|219677724|gb|EED34073.1| riboflavin biosynthesis protein RibD [gamma proteobacterium
           NOR51-B]
          Length = 371

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 126/374 (33%), Positives = 185/374 (49%), Gaps = 27/374 (7%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           +S D  +M+ AL  +       + NP V C++V +G VIG G T   G  HAE++ALE A
Sbjct: 3   TSADEIYMARALALAGEARFWATPNPHVGCVLVHEGKVIGEGFTQPAGGNHAEIEALEHA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
             +  GATAYVTLEPC+H GR+ PCA  +I+ G+ RVVV V DP   V GRG+  L   G
Sbjct: 63  TADPSGATAYVTLEPCAHTGRTGPCADALIDAGLTRVVVAVGDPYPAVDGRGIDRLRAAG 122

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +   ++  +    +  +L R       + LK+A S D    MA   S  ITG  +++ 
Sbjct: 123 IEVSVGVLAVQASDLMAGFLMRMQRGWGRVRLKMAASLDGRTAMASGESQWITGVEARSD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSL 232
           V  LRA+S AI+ GIGTVLADD  LT R   L              P+R++LD   +   
Sbjct: 183 VQRLRAESCAIVTGIGTVLADDCALTVRSESLSLDEDARRRAVVKPPLRVVLDSAGRTPG 242

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
           D++I  T     +I   + D P  A      +    +    DL  +L  L  RG+  +L+
Sbjct: 243 DARITSTGAPTLIITAPDVDAPDYAGEVEVASNATGHDGRLDLSAVLMQLGARGINEVLL 302

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           E G  +A +F+ + LVD ++LY++  ++G+   P              +  D     V L
Sbjct: 303 EVGPTLAAAFLKAGLVDEVVLYQAPKLLGDTARP-----------LAALSIDRLAEAVAL 351

Query: 353 EY-----IGKNLCL 361
           EY     +G +L +
Sbjct: 352 EYQDVTPVGNDLRI 365


>gi|223939370|ref|ZP_03631249.1| riboflavin biosynthesis protein RibD [bacterium Ellin514]
 gi|223891974|gb|EEF58456.1| riboflavin biosynthesis protein RibD [bacterium Ellin514]
          Length = 365

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 122/358 (34%), Positives = 173/358 (48%), Gaps = 16/358 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
           M  AL  +R   G TS NP V  ++VK G VIGRG     G PHAEV+AL++A   G + 
Sbjct: 1   MQNALALARRAYGNTSPNPLVGAVLVKHGKVIGRGWHHRAGQPHAEVEALKDAASKGNDP 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           +GAT YVTLEPC  +GR+PPC + I    I++VVV   DP+   +GR    L + GI +V
Sbjct: 61  KGATLYVTLEPCCTHGRTPPCTEAIKAAKIKKVVVAATDPNPAHAGRAFPLLERAGIKVV 120

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++  E      ++    V     + +K A++ D  I  AG  S  ITG  ++     L
Sbjct: 121 SGILAEEAGELNESFNHWIVHGTPLVIVKAAMTLDGKIATAGGESKWITGEKARAYGMKL 180

Query: 187 RAQSDAILVGIGTVLADDPELTCRL---NGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           R  +DAILVG+ TVLADDP LT R+   N  +E    RIILD   +  L +K++      
Sbjct: 181 RQGADAILVGVNTVLADDPSLTVRVQSRNKSEEKKFRRIILDSQARTPLKAKVVSDEFRE 240

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299
              IV     P   +    +  N++    +    DL+ L+  L G  V SLLVEGG  V 
Sbjct: 241 FTTIVVLKSAPERRVTALARQANVLVAPEKQGKIDLRWLVKKLGGENVMSLLVEGGGEVN 300

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-----LEKNFMCVRRDYFGSDVCL 352
            SF+  RL   +  + +  ++G       +                V     G+D+ L
Sbjct: 301 ASFLLGRLAHRVAFFYAPKILGGRDARKGVAGDGSTTLADAIKLKDVEWRRLGADLLL 358


>gi|33862648|ref|NP_894208.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. MIT 9313]
 gi|33634564|emb|CAE20550.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. MIT 9313]
          Length = 368

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 114/358 (31%), Positives = 176/358 (49%), Gaps = 10/358 (2%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +M  AL+ +    G TS NP V  +++ K G ++G G  A  G PHAEV AL +AG++A 
Sbjct: 14  WMRRALQLAALADGRTSPNPLVGAVVLDKAGKLVGEGFHACAGEPHAEVGALAQAGKQAS 73

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           G T  VTLEPC H GR+PPC + +I  G+RRVVV + DPD RV+G G+  L   G+ ++ 
Sbjct: 74  GGTLLVTLEPCCHQGRTPPCTEAVIAAGLRRVVVAMQDPDPRVAGAGITRLRDAGLEVIT 133

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++E E      A++ R    R    LK A+S D    +    S  I+G  ++  VH LR
Sbjct: 134 AVLELEAAHQNRAFVHRVSTGRPWGILKWAMSLDGRTALPNGASQWISGGEARRWVHRLR 193

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            Q DA++VG GTV ADDP LT R  G  +  P R++L     L   +++  TA+    ++
Sbjct: 194 GQCDAVIVGGGTVRADDPLLTSR--GHSDPEPKRVVLSRSLDLPQQAQLWNTAVAQ-TLV 250

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
               +     LA   +   ++     +  +LL  L  +    +L E G  +A + +    
Sbjct: 251 AHGLEPGHEQLAHLPEGPELLALPVSEPLELLQALAQQDCNRVLWECGPGLAAAALQQGC 310

Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVCLEYIGKNLC 360
           V  + +  +  ++G     +PL++  L      V          G+D  L+Y     C
Sbjct: 311 VQELAVVVAPKLLGGLPARTPLDDLGLTSMKEVVGLASGSLQSLGADWLLQYELSKHC 368


>gi|56416383|ref|YP_153457.1| riboflavin biosynthesis protein [Anaplasma marginale str. St.
           Maries]
 gi|222474753|ref|YP_002563168.1| riboflavin biosynthesis protein (ribD) [Anaplasma marginale str.
           Florida]
 gi|254994610|ref|ZP_05276800.1| riboflavin biosynthesis protein (ribD) [Anaplasma marginale str.
           Mississippi]
 gi|56387615|gb|AAV86202.1| riboflavin biosynthesis protein [Anaplasma marginale str. St.
           Maries]
 gi|222418889|gb|ACM48912.1| riboflavin biosynthesis protein (ribD) [Anaplasma marginale str.
           Florida]
          Length = 371

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 138/353 (39%), Positives = 195/353 (55%), Gaps = 11/353 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAG 64
            D RFMS ALR +   +G T  NP+V C++    G ++GRG TA GG PHAEV AL++AG
Sbjct: 3   DDERFMSIALRLAHRGLGNTYPNPTVGCVVTNSAGSIVGRGWTAMGGRPHAEVVALKQAG 62

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E A G+T YVTLEPC H+G++ PC   +I  G+RRVV+   DPD RVSG+G + L+  G+
Sbjct: 63  EAAAGSTVYVTLEPCCHHGQTGPCTAALISAGVRRVVIAALDPDKRVSGKGARSLADSGV 122

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   +++ + +     +   + ++R  IT+K+A + D  I +       IT  +++  V
Sbjct: 123 EVKLGVLQQQAEELNVGFFYSKTKRRPFITVKLATTLDGKISLPNGSDRWITNELTRKWV 182

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  RA  D I+VG  TV+ADDP L CRL GL+EHSP+RI++D   KL    K++ T+ + 
Sbjct: 183 HKQRAMHDGIMVGSNTVVADDPMLDCRLPGLEEHSPIRIVIDRSGKLCSHHKVVATSDVV 242

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGR-GVTSLLVEGGAAVAHS 301
           P  I T+NDD     A R   I    C+  D L   +  L    G+T L VEGG  +   
Sbjct: 243 PTYIATDNDDHKALHAVRYLRI----CERGDFLAGTMNALAEELGITRLFVEGGGVLVTE 298

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK---NFMCVRRDYFGSDVC 351
            +   LVD  I  R+  V GE G+ S L    L     +F  V+   F  D  
Sbjct: 299 LLKRGLVDQFIWCRANRVCGEQGVESILNLNELPSGHCHFSRVKTLTFMEDTV 351


>gi|282889950|ref|ZP_06298485.1| hypothetical protein pah_c008o037 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500143|gb|EFB42427.1| hypothetical protein pah_c008o037 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 359

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 118/359 (32%), Positives = 177/359 (49%), Gaps = 15/359 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  +     L+  NP V  +IVK G ++G G T   G  HAE+ AL +A  +A  +
Sbjct: 1   MDRALALATQARLLSPPNPWVGAVIVKQGKIVGEGFTQAPGEAHAEIMALRQALHQAENS 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPCSH+G++PPC   II+  I  VV+ ++DPD +VSGRG+Q L + GI +   +
Sbjct: 61  TLYVTLEPCSHFGKTPPCVNAIIQAKIAHVVIALEDPDPQVSGRGIQKLKEAGISVTVGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            +      L  YL ++   R     K A+S D  +  +   S  IT  +S+     LRA+
Sbjct: 121 EQQRATELLEPYLFQRKTGRPFCVAKAAISLDGRVAASDHTSKWITNELSRQDAQRLRAE 180

Query: 190 SDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKL-SLDSKIIKTALLAPVII 247
           S AIL+G GT   D P LT R  + L   +P+R++LD    L  L S +  T L    I+
Sbjct: 181 SQAILIGSGTAKYDHPRLTVRSFSPLPYQAPLRVVLDSRGTLTDLSSPLFNTNLAPTCIL 240

Query: 248 VTENDDPVLALAFRKKNINIIYC------DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            T+     +   ++   I  I        +  DL +++  L  +G+  +L+EGGA +   
Sbjct: 241 TTDRCSTEIRDMWQSHGIESIILSQAKNGEGVDLNEVMKTLGKKGILQVLIEGGATLLGQ 300

Query: 302 FINSRLVDSIILYRSQIVIGEGGIP-----SPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           F++ +L+ ++ LY    V+G  GIP     SP +       F           V L Y 
Sbjct: 301 FMHEQLIQTLHLYIGPKVLGCDGIPLFGSFSP-QTLINAPQFQLKETKRLDDCVYLHYR 358


>gi|229524273|ref|ZP_04413678.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae bv. albensis VL426]
 gi|229337854|gb|EEO02871.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae bv. albensis VL426]
          Length = 367

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 119/374 (31%), Positives = 180/374 (48%), Gaps = 27/374 (7%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP+ +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +A E  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+G+G+Q L
Sbjct: 61  MRQAAELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++E++ +     +L R      ++ LK+A S D    +A   S  IT   
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227
           ++  V   RAQ+ AIL    TVLAD+  L  R + L               P+R+ILD  
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
            +L  +  + +T   +PV+ V   +  +   A   K                       V
Sbjct: 241 HQLHPELALYQTP--SPVLRVASENAELCISAENGKLDLRELLALLA--------QQHNV 290

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRR 343
             + VE G+ +A S I  +LVD IILY +  ++G  G       G  E            
Sbjct: 291 NQVWVEAGSQLAKSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDC 350

Query: 344 DYFGSDVCLEYIGK 357
              G+D+ +    K
Sbjct: 351 RMVGADLRIIATPK 364


>gi|255747035|ref|ZP_05420980.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholera CIRS 101]
 gi|262161421|ref|ZP_06030531.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae INDRE 91/1]
 gi|255735437|gb|EET90837.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholera CIRS 101]
 gi|262028732|gb|EEY47386.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae INDRE 91/1]
          Length = 365

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 118/371 (31%), Positives = 176/371 (47%), Gaps = 26/371 (7%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A+ +
Sbjct: 2   FTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+G+G+Q L   
Sbjct: 62  AGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E++ ++    +L R       + LK+A S D    +A   S  IT   ++ 
Sbjct: 122 GIEVEVGLLEADARVLNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPAARK 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKL 230
            V   RAQ+ AIL    TVLAD+  L  R                   P+R+ILD   +L
Sbjct: 182 DVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQHQL 241

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
             +  + +T   +PV+ V   +  +   A   K                       V  L
Sbjct: 242 HPELALYQTP--SPVLRVASENAELCISAENGKLDLRELLALLA--------QQHNVNQL 291

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYF 346
            VE G+ +A S I  +LVD IILY +  ++G  G       G  E               
Sbjct: 292 WVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMV 351

Query: 347 GSDVCLEYIGK 357
           G+D+ +    K
Sbjct: 352 GADLRIIATPK 362


>gi|91225069|ref|ZP_01260291.1| riboflavin-specific deaminase [Vibrio alginolyticus 12G01]
 gi|91190012|gb|EAS76283.1| riboflavin-specific deaminase [Vibrio alginolyticus 12G01]
          Length = 375

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 114/367 (31%), Positives = 172/367 (46%), Gaps = 28/367 (7%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   MS A++ ++  +  T+ NP+V C+IV+D  ++G G     G PHAEV A+  
Sbjct: 10  FSDLDFAMMSRAIKLAKRGIYTTAPNPNVGCVIVRDEEIVGEGYHHRAGEPHAEVHAMRM 69

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE+A GATAYVTLEPCSHYGR+PPCA+ +I+  + RVV  + DP+ +V+GRG+Q L   
Sbjct: 70  AGEKAVGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMVDPNPKVAGRGIQMLRDA 129

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E +       ++         + LK+A S D    ++   S  IT   ++ 
Sbjct: 130 GIEVQIGLLEQDALALNPGFIKYMRTGMPFVQLKMAASLDGQSALSNGQSQWITSPAARQ 189

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V   RA S  IL    TV+ D+  L  R + L               P+R+ILD    L
Sbjct: 190 DVQRYRAISGGILSTSKTVIDDNASLNVRWDDLPNSVQAQYLQEELRQPVRVILDRQNHL 249

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTS 289
           +   K+  T      +IV  + D +  L            D  DL   L  +     +  
Sbjct: 250 TDALKLFHTDGER--VIVRSDGDCIPLLD---------SADQIDLSTTLKRISDEHHINH 298

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDY 345
           L VE GA +A + I + LVD +I+Y +  ++G  G        L       +        
Sbjct: 299 LWVEAGATLASAMIKANLVDELIVYLAPKLMGSDGRGLIGALGLSAMADVIDLNITDVRM 358

Query: 346 FGSDVCL 352
            G D+ +
Sbjct: 359 VGVDIRI 365


>gi|328951151|ref|YP_004368486.1| riboflavin biosynthesis protein RibD [Marinithermus hydrothermalis
           DSM 14884]
 gi|328451475|gb|AEB12376.1| riboflavin biosynthesis protein RibD [Marinithermus hydrothermalis
           DSM 14884]
          Length = 390

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 117/376 (31%), Positives = 182/376 (48%), Gaps = 29/376 (7%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S  D R+M  AL+ +    G T  NP V  ++VKDG ++G G     G PHAEV AL +
Sbjct: 1   MSHLDERYMRRALQLAERARGHTHPNPLVGAVVVKDGRIVGEGYHPRAGLPHAEVFALRQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGAT YVTLEPC+H+GR+PPC   ++E G+ RVVV   DP+ + +  GL+ L+Q 
Sbjct: 61  AGEAARGATVYVTLEPCNHHGRTPPCTTALLEAGVARVVVAARDPNPK-AQGGLERLAQA 119

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +   ++E+E +     +     + R  +  K A + D  +      +  +TG  S+ 
Sbjct: 120 GVAVQWGVLEAEARAQNEVFFHGLEQNRPFVLWKAATTLDGRVATRTGHAQWVTGPQSRR 179

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFKLS 231
             H  R    AI VG+GTVLADDP LT R    +             P++++ D   +  
Sbjct: 180 IAHAYRQSLAAIAVGVGTVLADDPALTVRDPEFRPYPWMLEPPPLRDPLKVVFDTQARTP 239

Query: 232 LDSKIIKTALL---APVIIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILV 283
             +++         A V++      P     A       ++     +    L+  L  L 
Sbjct: 240 PQARLFAPGPRGEPARVVVFVGAAAPLERTRALEAAGARVVPLPDEEGRPSLRAALEWLW 299

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF----- 338
             G+  LL+EGG  +A +F+ + LVD + L+ +  ++GEG    PL  G           
Sbjct: 300 NEGIDGLLLEGGPTLAGAFVRAGLVDKLALFLAPKLVGEGR---PLLAGLGAARMDEALG 356

Query: 339 -MCVRRDYFGSDVCLE 353
               RR++ G ++ LE
Sbjct: 357 VTLTRREWVGEELWLE 372


>gi|89897925|ref|YP_515035.1| riboflavin biosynthesis protein [Chlamydophila felis Fe/C-56]
 gi|89331297|dbj|BAE80890.1| riboflavin biosynthesis protein [Chlamydophila felis Fe/C-56]
          Length = 377

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 102/337 (30%), Positives = 161/337 (47%), Gaps = 8/337 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S     FM  A+            NP V C+IVK+G +IG G     G PHAE +A+  
Sbjct: 4   FSEQQLFFMRRAIELGENGRLSAPPNPWVGCVIVKNGRIIGEGYHKKKGQPHAEEEAVNS 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
             E   G   YVTLEPC HYG +PPC   +I+  +  V V + DPD RVSG+G+  L   
Sbjct: 64  TTESIEGCDVYVTLEPCCHYGSTPPCVNLLIKHKVSTVYVALLDPDGRVSGKGIAALRNA 123

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   + + E +  L +Y+ ++   +  I +K A + D  +  +   S  IT   ++ 
Sbjct: 124 GIRVYVGLGKEEAESSLKSYIYQRTYGKPWIVIKSAATLDGQVADSDGQSQWITCPEARA 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKT 239
            V  +RA S AI++G  TVL DDP LT R     L  + P+R+++D    +   +K+   
Sbjct: 184 DVGKIRASSQAIVIGSKTVLQDDPLLTARKPSGELYSNQPLRVVVDSSGIVPPQAKVFHV 243

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295
              + + + T               + ++    R    DL +L+  L  + V  +LVEGG
Sbjct: 244 PGKS-LYVTTTRSSSEHIKNIEDLGVEVLVTQPRESKVDLHELVAYLSNKTVLQVLVEGG 302

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
           + +  SF+  RL ++++LY    + G+   P   + G
Sbjct: 303 SILHTSFLKERLANALVLYLGPKIFGDQRKPLFGDLG 339


>gi|121533690|ref|ZP_01665517.1| riboflavin biosynthesis protein RibD [Thermosinus carboxydivorans
           Nor1]
 gi|121307681|gb|EAX48596.1| riboflavin biosynthesis protein RibD [Thermosinus carboxydivorans
           Nor1]
          Length = 379

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 120/345 (34%), Positives = 186/345 (53%), Gaps = 10/345 (2%)

Query: 22  VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
            G TS NP V  +IVKDG ++G G     G PHAE+ A+ +AG+ A+ AT YVTLEPCSH
Sbjct: 18  EGQTSPNPMVGAVIVKDGTIVGEGWHHRAGTPHAEIHAINQAGDLAKDATLYVTLEPCSH 77

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140
           YGR+ PC Q I++ GI RVV  + DP+  V+G+G ++L + G+ +++ ++ +E       
Sbjct: 78  YGRTGPCVQAIVQAGITRVVAAMTDPNPLVAGQGFKFLRENGVEVIEGVLATEAAQLNEV 137

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           ++     K     LK A+S D  I      S  ITG  ++ +VH  R++ DAILVG+GTV
Sbjct: 138 FIKWITTKMPFGILKTAMSLDGKIATYTGHSRWITGLPARTRVHEWRSKYDAILVGVGTV 197

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
           +AD+PELT RL      +P+RI+ D   +  L++KI+       +I VT         A 
Sbjct: 198 VADNPELTARL-IPNGKNPLRIVADSLARTPLNAKIVTDGKAPTIIAVTPEAPSDRIAAL 256

Query: 261 RKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
           +     +I      D  DL+ L   L  R VTS+++EGG A+  S + + +VD +  + +
Sbjct: 257 KASGAEVIQVARGPDGIDLRSLFAYLGSRSVTSVMIEGGGALGASALAANVVDKVYWFIA 316

Query: 317 QIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
             +IG    P P+     E     V  +    +  +E +G++  +
Sbjct: 317 PKIIGGRSAPGPIGGMGAEYLEQAVELE----NTAIECVGEDFLV 357


>gi|260767835|ref|ZP_05876770.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio furnissii CIP 102972]
 gi|260617344|gb|EEX42528.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio furnissii CIP 102972]
          Length = 369

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 117/370 (31%), Positives = 182/370 (49%), Gaps = 28/370 (7%)

Query: 1   MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP  +SFD + MS A++ ++     T+ NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPTFTSFDYQMMSRAIKLAQRGRFTTAPNPNVGCVITQGESIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           L  AGE++ GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RV+  + DP+ +V+GRG+  L
Sbjct: 61  LRMAGEQSVGATAYVTLEPCSHYGRTPPCAEGLIKAGVARVICAMQDPNPQVAGRGIDML 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            + GI +   ++E++      A++ R       + LK+A S D    +A   S  IT   
Sbjct: 121 REAGIEVQVGLLEADALALNPAFIKRMKTGMPWVQLKMAASLDGQTALANGRSQWITSPQ 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPH 227
           ++  V   RAQ+ A+L    TVLAD+  LT R   L  H            P+R ILD  
Sbjct: 181 ARQDVQAYRAQAGAVLSTSQTVLADNASLTVRWQDLPAHVQATYAEQHLRQPVRAILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-RG 286
            +L  +  +  T     V+ V   D  V         + +      +L+++L  L     
Sbjct: 241 HQLHRELALYATDSA--VLRVANQDADV--------CVALDEHGQLNLREVLGALAKHHN 290

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVR 342
           +  + VE GA +A S +   LVD +++Y +  ++G  G       G  +           
Sbjct: 291 INHIWVEAGATLAKSLLEQDLVDELVVYLAPKIMGSDGRGLFGALGLTDMQQVLALNIQD 350

Query: 343 RDYFGSDVCL 352
               G D+ +
Sbjct: 351 CRMVGPDIRV 360


>gi|26987252|ref|NP_742677.1| riboflavin biosynthesis protein RibD [Pseudomonas putida KT2440]
 gi|24981894|gb|AAN66141.1|AE016242_9 riboflavin biosynthesis protein RibD [Pseudomonas putida KT2440]
          Length = 378

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 126/366 (34%), Positives = 188/366 (51%), Gaps = 20/366 (5%)

Query: 1   MPVSS--FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
           MP  +   DA +M+ AL  +R  +  T  NP V C+IV+DG V+G G     G PHAEV 
Sbjct: 3   MPSQAAILDAHYMARALELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVH 62

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           AL +AGE ARGA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV  + DP+ +V+G+GL+ 
Sbjct: 63  ALRQAGELARGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGLRR 122

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L++ GI +   ++E+E +     +L R       +  K+A+S D    MA   S  ITG 
Sbjct: 123 LAEAGIEVASGVLEAEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGP 182

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPH 227
            +++ V  LRA+S  +L    +VLAD+  +T R   L             +P+R+++D  
Sbjct: 183 AARSAVQRLRARSSVVLTSAASVLADNARMTVRGAELGLDAETTALALSRTPLRVLVDGR 242

Query: 228 FKLSLDSKIIKTALLAPVIIVTE-NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286
            +L L +   +     P ++VT   DDP  A A  +           DL  LL  L  RG
Sbjct: 243 LRLPLAAPFFQ---AGPALVVTAVADDPRYAAAGHELLSLPGDNGQVDLGALLHALAARG 299

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRR 343
           V  +L+E GA +  +F    LVD   L+ +   +G    P    P+++            
Sbjct: 300 VNEILLEAGAGLVGAFARQGLVDEYQLFVAGTFLGSQARPLLDWPMDKMSEAPRLKITEM 359

Query: 344 DYFGSD 349
              G D
Sbjct: 360 RAVGDD 365


>gi|315179335|gb|ADT86249.1| riboflavin biosynthesis protein RibD [Vibrio furnissii NCTC 11218]
          Length = 369

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 117/370 (31%), Positives = 182/370 (49%), Gaps = 28/370 (7%)

Query: 1   MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           MP  +SFD + MS A++ ++     T+ NP+V C+I +   ++G G     G PHAEV A
Sbjct: 1   MPTFTSFDYQMMSRAIKLAQRGRFTTAPNPNVGCVITQGESIVGEGFHFRAGEPHAEVHA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           L  AGE++ GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RV+  + DP+ +V+GRG+  L
Sbjct: 61  LRMAGEQSVGATAYVTLEPCSHYGRTPPCAEGLIKAGVARVICAMQDPNPQVAGRGIDML 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            + GI +   ++E++      A++ R       + LK+A S D    +A   S  IT   
Sbjct: 121 REAGIEVQVGLLEADALALNPAFIKRMKTGMPWVQLKMAASLDGQTALANGRSQWITSPQ 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPH 227
           ++  V   RAQ+ A+L    TVLAD+  LT R   L  H            P+R ILD  
Sbjct: 181 ARQDVQAYRAQAGAVLSTSQTVLADNASLTVRWQDLPAHVQATYAEQHLRQPVRAILDRQ 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-RG 286
            +L  +  +  T     V+ V   D  V         + +      +L+++L  L     
Sbjct: 241 HQLHRELTLYATDSA--VLRVANQDADV--------CVALDEQGQLNLREVLGALAKHHN 290

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVR 342
           +  + VE GA +A S +   LVD +++Y +  ++G  G       G  +           
Sbjct: 291 INHIWVEAGATLAKSLLEQDLVDELVVYLAPKIMGSDGRGLFGALGLTDMQQVLALSIQD 350

Query: 343 RDYFGSDVCL 352
               G D+ +
Sbjct: 351 CRMVGPDIRV 360


>gi|75675917|ref|YP_318338.1| riboflavin biosynthesis protein RibD [Nitrobacter winogradskyi
           Nb-255]
 gi|74420787|gb|ABA04986.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Nitrobacter
           winogradskyi Nb-255]
          Length = 387

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 149/364 (40%), Positives = 201/364 (55%), Gaps = 12/364 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D  FM  AL   R  +G ++ NP+V  +IVKDG+++GRG T  GG PHAE +AL  AG
Sbjct: 19  TVDLHFMQLALALGRRSLGASAPNPAVGAVIVKDGVIVGRGWTQPGGRPHAEAEALRRAG 78

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGAT YVTLEPCSH G++PPCA  +I  GI RVV  ++DP   VSG+G   L   G+
Sbjct: 79  EAARGATLYVTLEPCSHVGKTPPCADAVIAAGITRVVSAIEDPTPEVSGQGHARLRAAGV 138

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   +  +E       +  R  ++R HI LK+AVS D  I  AG   V ITG  ++ + 
Sbjct: 139 AVEIGLCAAEAAHHHAGHFRRVRDRRPHIILKLAVSSDGKIAAAGGVPVAITGEAARARA 198

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           HLLRAQ  AILVGIGTVLADDP LTCRL G++  SP+R++LD   ++   S+++++A   
Sbjct: 199 HLLRAQCSAILVGIGTVLADDPLLTCRLPGMETRSPLRVVLDQALRIPESSRLVQSARET 258

Query: 244 PVIIVTEN-DDPVLALAFRKKNINIIY------CDCRDLKKLLTILVGRGVTSLLVEGGA 296
           P+ I+T    +   A+        ++           DL  +L  L   GVT L+VEGGA
Sbjct: 259 PLWIMTSEFAEASRAMKLGAAGARVMRVPGAAGAPGLDLVAVLRALSESGVTRLVVEGGA 318

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
            VA SFI + LVD   L R    IG+ G+ +    PL        F     +    D   
Sbjct: 319 RVAASFIAAALVDEAWLLRGPDPIGDDGVAALGALPLTVITGSPEFRMCAGETLDQDALA 378

Query: 353 EYIG 356
            Y  
Sbjct: 379 IYER 382


>gi|313673619|ref|YP_004051730.1| riboflavin biosynthesis protein ribd [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940375|gb|ADR19567.1| riboflavin biosynthesis protein RibD [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 385

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 124/357 (34%), Positives = 181/357 (50%), Gaps = 11/357 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A++ +    G   TNP V  ++VK+G VIGRG     G PHAE++AL++  E   G 
Sbjct: 8   MDEAIQLALMGKGYNYTNPIVGAVVVKNGKVIGRGYHTGFGMPHAEIEALKDCEESPEGG 67

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
             YVTLEPCS  G++PPC   II+ GI+RV + V DP+   SG+ ++ L+  GI +    
Sbjct: 68  DLYVTLEPCSTTGKTPPCTDAIIKSGIKRVFIGVVDPNPNHSGKAIKILNDAGIEVFLGF 127

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            E      +  +    ++++ + TLK A S D MI  +   S  I+G  S+  VH LR+ 
Sbjct: 128 NEHVCAEIIEDFTKFILKRQPYFTLKAASSIDGMIATSTGDSKWISGESSRIYVHYLRSV 187

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           SD I+VGI TV  DDP L  R N  +E  P++IILD    +S +SK++K      +I  T
Sbjct: 188 SDGIIVGINTVKNDDPLLNVR-NFNREKEPLKIILDSKLSISPESKVVKDFGKYLIIATT 246

Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
             DD  +    ++  + ++ C  +    DL  L   LV   + ++ VEGG  V  SFI  
Sbjct: 247 VRDDSKM-DNLKRYGVRVLICKEKNGFVDLMDLSDKLVSLNLLNIFVEGGGKVFASFIKE 305

Query: 306 RLVDSIILYRSQIVIGEGGIPSP--LEEGYLEKNFMC--VRRDYFGSDVCLEYIGKN 358
            LVD    + S  VIG  G+P    L    +E  + C       F  D+   Y   +
Sbjct: 306 GLVDRFYHFISPKVIGGDGVPLFGDLNCEKIEDAYKCKLTDTKRFEEDILHIYKFND 362


>gi|262395034|ref|YP_003286888.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio sp. Ex25]
 gi|262338628|gb|ACY52423.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio sp. Ex25]
          Length = 375

 Score =  322 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 115/367 (31%), Positives = 174/367 (47%), Gaps = 28/367 (7%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   MS A++ +R  +  T+ NP+V C+IV+D  ++G G     G PHAEV A+  
Sbjct: 10  FSDLDFAMMSRAIKLARRGIYTTAPNPNVGCVIVRDEEIVGEGYHHRAGEPHAEVHAMRM 69

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE+A GATAYVTLEPCSHYGR+PPCA+ +I+  + RVV  + DP+ +V+GRG+Q L   
Sbjct: 70  AGEKAVGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMVDPNPKVAGRGIQMLRDA 129

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E +       ++         + LK+A S D    ++   S  IT  +++ 
Sbjct: 130 GIEVQIGLLEQDALALNPGFIKYMRTGMPFVQLKMAASLDGQSALSNGQSQWITSPVARQ 189

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V   RA S  IL    TV+ D+  L  R + L               P+R+ILD    L
Sbjct: 190 DVQRYRAMSGGILSTSKTVIDDNASLNVRWDDLPTSVQAQYLREELRQPVRVILDRQNHL 249

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTS 289
           +   K+  T      +IV+ + D +  L            D  DL   L  +     +  
Sbjct: 250 TDALKLFHTDGER--VIVSPDGDCIPLLD---------SADQIDLSTTLKRISDEHHINH 298

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDY 345
           L VE GA +A + I + LVD +I+Y +  ++G  G        L       +        
Sbjct: 299 LWVEAGATLASAMIKANLVDELIVYLAPKLMGSDGRGLIGALGLSAMADVIDLNITDVRM 358

Query: 346 FGSDVCL 352
            G D+ +
Sbjct: 359 VGVDIRI 365


>gi|154706505|ref|YP_001424060.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Coxiella
           burnetii Dugway 5J108-111]
 gi|154355791|gb|ABS77253.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Coxiella
           burnetii Dugway 5J108-111]
          Length = 354

 Score =  322 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 114/359 (31%), Positives = 178/359 (49%), Gaps = 14/359 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  SS D  ++  AL  +    G  + NPSV  ++VKD  +I  G     G PHAEV+A+
Sbjct: 1   MNDSSLD--YLKKALSLAEIRRGFCAPNPSVGAVVVKDDKIISTGFHKRSGLPHAEVEAI 58

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           +   ++ARGA  YVTLEPC H+G++PPC   II+ GI+ V   + DP++ V G+G++ L 
Sbjct: 59  KSLDDKARGAALYVTLEPCCHFGKTPPCTDLIIQSGIKAVYYGLHDPNLAVCGKGIEQLQ 118

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           + G+    +   E   F  +Y      KR  +T K+A+S D  I       V +TG   +
Sbjct: 119 RAGVNCFLIELPEINAFYESYRYWIKHKRPWVTAKLALSLDGKIAGNEGKPVRLTGEGLR 178

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              H  R +SDA+L  I T+L DDP+L  RL G +   P+ I LD H +L L++ +I   
Sbjct: 179 QYTHERRKKSDALLTTINTILTDDPKLNVRLQGEEIKKPIYI-LDTHLRLPLNA-LIHQT 236

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGA 296
             + ++      D        +KNI  I      +  DL ++L ++   G+  L +E G 
Sbjct: 237 AESIIVFHGNEADKKQQQRLMQKNIRCIEIARRSEGLDLNEVLDVIGNDGIHDLWIEAGG 296

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM--CVRRDYFGSDVCLE 353
               SF+   L++  ++Y +  ++G   +P+      L  +F    V    F  DV  E
Sbjct: 297 TCFQSFLKENLINRALIYIAPKILGSTAMPAF----QLPFSFSGYSVEWRQFREDVMGE 351


>gi|86749753|ref|YP_486249.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris
           HaA2]
 gi|86572781|gb|ABD07338.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Rhodopseudomonas palustris HaA2]
          Length = 389

 Score =  322 bits (826), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 159/362 (43%), Positives = 208/362 (57%), Gaps = 12/362 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM  AL   R  +G T TNP+V  ++VKDG+++GRG T  GG PHAEV+AL  AGE 
Sbjct: 27  DRRFMQLALTLGRRGLGRTGTNPAVGAVLVKDGVIVGRGWTQDGGRPHAEVEALARAGEA 86

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGAT YVTLEPCSH+GRSPPCA  II  G+ RVV  ++DP+  V G+G   L   GI +
Sbjct: 87  ARGATLYVTLEPCSHHGRSPPCADAIIAAGVARVVSAIEDPNPLVGGQGHGKLRAAGIAV 146

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +   E       +L R  E+R H+ LK+AVS D+ I   G   V ITG  ++ +VHL
Sbjct: 147 ELGVCVEEAARDHAGHLLRVREQRPHVVLKLAVSTDDKIAADGRKPVAITGEAARARVHL 206

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQSDAILVGIGTVLADDPELT RL G+ + SP+R++LD   ++  DSK++ +A   P+
Sbjct: 207 LRAQSDAILVGIGTVLADDPELTVRLPGMAKQSPIRVVLDRALRIPGDSKLVHSARATPL 266

Query: 246 II-VTENDDPVLALAFRKKNINIIYC------DCRDLKKLLTILVGRGVTSLLVEGGAAV 298
            +  +E  +P  A         +I           D+  +L  L  +GVT LLVEGGA  
Sbjct: 267 WLMASEIAEPAAAARLGAAGAEVIRAPDCQRTPGLDIAAVLAALSEKGVTRLLVEGGARA 326

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           A +F+ S LVD I L R    IGE G+ +    PL        +     +  G D    +
Sbjct: 327 ARAFVESGLVDEIWLLRGDKAIGEDGVDALDGLPLASITASSAWRVRDSERLGPDTLTIF 386

Query: 355 IG 356
             
Sbjct: 387 EP 388


>gi|269965078|ref|ZP_06179243.1| riboflavin-specific deaminase [Vibrio alginolyticus 40B]
 gi|269830381|gb|EEZ84606.1| riboflavin-specific deaminase [Vibrio alginolyticus 40B]
          Length = 375

 Score =  322 bits (826), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 113/367 (30%), Positives = 170/367 (46%), Gaps = 28/367 (7%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   MS A++ ++  +  T+ NP+V C+IV+D  ++G G     G PHAEV A+  
Sbjct: 10  FSDLDFAMMSRAIKLAKRGIYTTAPNPNVGCVIVRDEEIVGEGYHHRAGEPHAEVHAMRM 69

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE+A GATAYVTLEPCSHYGR+PPCA+ +I+  + RVV  + DP+ +V+GRG+Q L   
Sbjct: 70  AGEKAVGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMVDPNPKVAGRGIQMLRDA 129

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E +       ++         + LK+A S D    +    S  IT   ++ 
Sbjct: 130 GIEVQIGLLEQDALALNPGFIKYMRTGMPFVQLKMAASLDGQSALNNGQSQWITSPAARQ 189

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V   RA S  IL    TV+ D+  L  R + L               P+R+ILD    L
Sbjct: 190 DVQRYRAMSGGILSTSKTVIDDNASLNVRWDDLPTSVQAQYLREELRQPVRVILDRQNHL 249

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTS 289
           +   K+  T     +I    +  P+L              D  DL   L  +     +  
Sbjct: 250 TGALKLFHTDGERVIIRSDGDCIPLLD-----------SADQIDLSTTLKRISDEHHINH 298

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDY 345
           L VE GA +A + I + LVD +I+Y +  ++G  G        L       +        
Sbjct: 299 LWVEAGATLASAMIKANLVDELIVYLAPKLMGSDGRGLIGALGLSAMADVIDLNITDVRM 358

Query: 346 FGSDVCL 352
            G D+ +
Sbjct: 359 VGVDIRI 365


>gi|134095549|ref|YP_001100624.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (N-terminal)/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Herminiimonas arsenicoxydans]
 gi|133739452|emb|CAL62503.1| bifunctional riboflavin biosynthesis protein ribD [Includes:
           Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (Riboflavin-specific deaminase);
           5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
           reductase)] [Herminiimonas arsenicoxydans]
          Length = 363

 Score =  322 bits (826), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 119/358 (33%), Positives = 178/358 (49%), Gaps = 17/358 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D + +  AL  +   +  T+ NP V C+IVK+  VIG G T   G  HAEVQAL +A   
Sbjct: 6   DVQGIRLALELAARGMFTTAPNPRVGCVIVKENQVIGSGYTQPAGHAHAEVQALNDAANK 65

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G +  G+T YVTLEPCSH+GR+PPCA  +I   + RVV  + DP+  V+G+GL  L   G
Sbjct: 66  GYDVAGSTVYVTLEPCSHHGRTPPCADALIRARVARVVAAIADPNPLVAGQGLARLEAAG 125

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +   ++E+E +     +L+R    +  + +K A S D M  +    S  ITG  ++  
Sbjct: 126 IEVACGVLEAEAREINIGFLSRMQHGKPWVRMKSAASLDGMTALHNGISQWITGDEARAD 185

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H+ RA++ AIL GIGTV  DDP+LT R   +    P RI++D   ++S  ++++     
Sbjct: 186 GHVWRARACAILTGIGTVREDDPQLTVRAIDIP-RQPQRIVIDSQLQISPHARVLSGGG- 243

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAV 298
               IV     P      R     II         DL  L+  L  R +  L VE G  +
Sbjct: 244 --TWIVAAQAHPAREKILRDLGNEIIVLPNADGKVDLPALMLELGRRQINELHVEAGFKL 301

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
             S I    VD +++Y +  ++G+      +P  LE    +KN         G+D+ +
Sbjct: 302 NGSLIREDCVDELLVYLAPTLLGDAQRMFNLPV-LESLEQKKNMTFHEVKQIGADLRI 358


>gi|113954800|ref|YP_730035.1| riboflavin biosynthesis protein RibD [Synechococcus sp. CC9311]
 gi|113882151|gb|ABI47109.1| riboflavin biosynthesis protein RibD [Synechococcus sp. CC9311]
          Length = 365

 Score =  322 bits (826), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 114/357 (31%), Positives = 181/357 (50%), Gaps = 12/357 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +M  AL+ +    G TS NP V  +++   G ++G G  A  G  HAEV AL +AG  A+
Sbjct: 11  WMRRALQLAALAEGQTSPNPLVGAVVLDAQGALVGEGFHAKAGQAHAEVGALAQAGGRAK 70

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           G T  VTLEPC H GR+PPC++ +I+ GI+RVVV + DPD RV+G G+Q L   G+ ++ 
Sbjct: 71  GGTIIVTLEPCCHQGRTPPCSEAVIQAGIQRVVVALKDPDPRVAGGGIQRLRDAGLEVIT 130

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++E+E      A++ R    R    LK A+S D    +    S  I+   ++  VH LR
Sbjct: 131 GVLEAEAAHQNRAFIHRVQTGRPWGLLKWAMSLDGRTALPNGESQWISAPPARGWVHQLR 190

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           A  DA++VG GTV AD+P LT R  G++   P+R++L     L   +++  T L +  ++
Sbjct: 191 AGCDAVIVGGGTVRADNPLLTSR--GVRAPEPLRVVLSRSLDLPPQAQLWDTTLAS-TLL 247

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
                     L    + + ++  +  DL   L  L  RG   +L E G ++A   +    
Sbjct: 248 AHGPGCADRPLPEGPERLELLASEPLDL---LHALAPRGCNRVLWECGPSLAAQAVKQGC 304

Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQEL 364
           V  + +  +  ++G     +PL E      F  + +    S +  E++G +L L  L
Sbjct: 305 VQELAVVIAPKLLGGTLARTPLGELG----FSAMDQVIPLSALTAEWLGCDLLLGAL 357


>gi|256827880|ref|YP_003156608.1| riboflavin biosynthesis protein RibD [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577056|gb|ACU88192.1| riboflavin biosynthesis protein RibD [Desulfomicrobium baculatum
           DSM 4028]
          Length = 374

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 115/371 (30%), Positives = 174/371 (46%), Gaps = 19/371 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D  FM  A+R +    G T+ NP V  ++ + G V+  G     G PHAEV+AL +A   
Sbjct: 4   DCAFMDQAIRLAEQGRGRTAPNPCVGAVLTRGGEVVAEGWHTACGQPHAEVEALRDAQAK 63

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G + RG T YVTLEPC+H G++PPC + I+E G+  VVV   DP+  V+G G  +L  +G
Sbjct: 64  GVDPRGCTLYVTLEPCNHQGKTPPCTRAILEAGVPEVVVGCADPNPTVAGGGADFLRGRG 123

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + +   + E E +  +  +L  Q   R +  LK+A + D  I      +  I+G  S+ +
Sbjct: 124 VTVRMGVREQECRDLIADFLVWQTTARPYSILKLATTLDGKIATRDGQAAWISGEASRRE 183

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL-DSKIIKTAL 241
           VH LR    A++VG GT  AD+P LTCRL G     P+ +I+         DS ++ T  
Sbjct: 184 VHRLRTWCQAVIVGGGTFRADNPSLTCRLPGYDGPQPLAVIVSRSLPDPAQDSNLLSTRP 243

Query: 242 LAPVIIVTENDDP-VLALAFRKKNINIIYCDC-------RDLKKLLTILVG-RGVTSLLV 292
              +   TE     + A    +  + +    C        DL   L +L   RG    L 
Sbjct: 244 DQIIFWTTEAQSRSIRATRLTELGVTVWGLPCLKTPAETLDLNAGLQLLRKDRGCHYTLT 303

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFG 347
           EGG  +A S     LVD + ++++  V+G+    S               F  V + +F 
Sbjct: 304 EGGGHLAGSMQRQGLVDELRIFQAMKVLGDEEARSAFAGRKALSMQDCWEFRLVEQGFFE 363

Query: 348 SDVCLEYIGKN 358
           +D+ L    K 
Sbjct: 364 TDLYLRLRAKE 374


>gi|73540480|ref|YP_295000.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Ralstonia eutropha JMP134]
 gi|72117893|gb|AAZ60156.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Ralstonia eutropha JMP134]
          Length = 371

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 116/354 (32%), Positives = 183/354 (51%), Gaps = 17/354 (4%)

Query: 20  WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTL 76
             +  T+ NP V C++ K+G +IG+G T   G  HAE+QAL++A   G +  GATAYVTL
Sbjct: 19  RGMFTTTPNPRVGCVLSKNGQIIGQGFTQPAGQDHAEIQALKDAQTRGIDPAGATAYVTL 78

Query: 77  EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGK 135
           EPCSH+GR+PPCA  ++  GI RVV  ++DP+  VSGRGLQ L   GI +   ++E E +
Sbjct: 79  EPCSHFGRTPPCADALVRAGIARVVAAMEDPNPSVSGRGLQRLRDAGIDVRCGLLEKEAR 138

Query: 136 IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195
                +++R       + +K+A S D    +    S  ITG  +++  H  RA++ AIL 
Sbjct: 139 DLNIGFVSRMTRGLPWVRVKVAASMDGGTALHDGTSQWITGQAARDDGHAWRARACAILT 198

Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK---TALLAPVIIVTEND 252
           GIGTV  D+P++T R        P R+++D   ++ LD++I+      L  PV++ +  D
Sbjct: 199 GIGTVRDDNPQMTVR-AIPTPRQPQRVLVDSRLEVPLDARILTPDSGDLAKPVLVFSAVD 257

Query: 253 DPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           D     A   +   ++         +L+K+L  L  RG+  L VE G  +  S I     
Sbjct: 258 DRERRHALEARGAEVVVLPNPHGKVELRKMLEELGRRGINELHVEAGFKLNGSLIREHCA 317

Query: 309 DSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           D +++Y +  ++G+      +P PL       +F        G D+ L     +
Sbjct: 318 DELLIYLAPKLLGDAQGMFNLP-PLSRLQDAASFRWHDVRQIGEDLRLIARRSD 370


>gi|27904888|ref|NP_778014.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
 gi|46396884|sp|Q89AB0|RIBD_BUCBP RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
           RecName:
           Full=Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase; Includes: RecName:
           Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|27904286|gb|AAO27119.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
          Length = 372

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 109/370 (29%), Positives = 184/370 (49%), Gaps = 20/370 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A++ ++     TS NP+V C+IV + I++G G     G  HAE+ AL+ +GE+
Sbjct: 3   DIFYMKKAIKLAKKGSLTTSPNPNVGCIIVNNNIIVGSGWHKKTGMKHAEIYALKTSGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GATAY+TLEPCSH+G++PPC   + + GI RVV+   DP+ +VSG G++WL + GI +
Sbjct: 63  AKGATAYITLEPCSHFGKTPPCCVALTKYGISRVVIATLDPNPKVSGNGVKWLKKHGILV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
               +  E       +  R       I LK+A S D    +    S  IT   +++ V  
Sbjct: 123 TIGTLSKESIKINKGFFQRMTTGIPWIKLKLASSIDGRTALNNGKSKWITSDKARHDVQH 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-------------HSPMRIILDPHFKLSL 232
           +R +SDAI+    T+L D+P LT R     +               P+R+I+D   +++ 
Sbjct: 183 VREKSDAIISSSETILFDNPLLTVRNTNNNDNNQKLLKHSKTFLKQPIRVIIDSKNRITP 242

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
             K IK   L  +I +  +++  +  +  K+ I        DL  L+ +L    + ++L+
Sbjct: 243 SHKCIKQPGLLFLIRIHSDNN--IWPSHIKQIILNNKSKKIDLIDLVKMLAKYQINNILI 300

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGS 348
           E G +++ SF+   +++ +I+Y +  ++G    P    E Y        F   +    G 
Sbjct: 301 EAGPSLSSSFLKLNIINELIIYIAPKILGNYAKPLFFLENYSNLSDVPQFKFEKITQIGK 360

Query: 349 DVCLEYIGKN 358
           D+ L     N
Sbjct: 361 DLKLILTKHN 370


>gi|262168270|ref|ZP_06035967.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae RC27]
 gi|262023162|gb|EEY41866.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Vibrio cholerae RC27]
          Length = 365

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 118/371 (31%), Positives = 176/371 (47%), Gaps = 26/371 (7%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            +SFD + MS A+  +      TS NP+V C+I +   ++G G     G PHAEV A+ +
Sbjct: 2   FTSFDHQMMSRAIELAWRGHFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE  RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+  + DP+ +V+G+G+Q L   
Sbjct: 62  AGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E++ ++    +L R       + LK+A S D    +A   S  IT   ++ 
Sbjct: 122 GIEVEVGLLEADARVLNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPAARK 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKL 230
            V   RAQ+ AIL    TVLAD+  L  R                   P+R+ILD   +L
Sbjct: 182 DVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQHQL 241

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
             +  + +T   +PV+ V   +  +   A   K                       V  L
Sbjct: 242 HPELALYQTP--SPVLRVASENAELCISAENGKLDLRELLALLA--------QQHNVNQL 291

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYF 346
            VE G+ +A S I  +LVD IILY +  ++G  G       G  E               
Sbjct: 292 WVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMV 351

Query: 347 GSDVCLEYIGK 357
           G+D+ +    K
Sbjct: 352 GADLRIIATPK 362


>gi|193215778|ref|YP_001996977.1| riboflavin biosynthesis protein RibD [Chloroherpeton thalassium
           ATCC 35110]
 gi|193089255|gb|ACF14530.1| riboflavin biosynthesis protein RibD [Chloroherpeton thalassium
           ATCC 35110]
          Length = 368

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 107/360 (29%), Positives = 174/360 (48%), Gaps = 13/360 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           S D  ++   L+ ++   G  S NP V  +IV +G +IG G     G PHAEV A+    
Sbjct: 6   SEDEFYIDRCLKLAKKGAGFVSPNPLVGSVIVHNGKIIGEGFHEVYGGPHAEVNAIGSVA 65

Query: 65  E--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           +    + +T YV LEPC+H+G++PPCA  II   I RVV+   DP   VSG+G + L   
Sbjct: 66  QPILLQESTLYVNLEPCAHFGKTPPCADLIIRHKIPRVVIGCLDPFEHVSGKGAEKLRHA 125

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +   ++ESE      A++   ++KR  + LK A + D  I      S  IT   S+ 
Sbjct: 126 GVEVKVGVLESEALRLNEAFIHFHIQKRPFVALKFAQTLDGKIATTSGDSKWITNKASRT 185

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
             H LR+   AIL+G  T LADDPELT R   ++  +P+R++LD    + L +KI   A 
Sbjct: 186 LGHQLRSWHSAILIGTNTALADDPELTVR--HVEGKNPVRVLLDRRLSVPLTAKIFNAAA 243

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAA 297
              V   ++N +        +KN+ + +           ++  +L  + + S+ VEGG+ 
Sbjct: 244 NTLVFTSSQNTNHPKVGKLNEKNVEVFFVTENEAGLSFSEIFQVLYEKKLLSVYVEGGSG 303

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS--PLEEGYLEK--NFMCVRRDYFGSDVCLE 353
           V    I     +    + +  ++G  G+ +  PLE   + +  +    +      D+ +E
Sbjct: 304 VYSRLIQEGYCEKFYGFIAPKIVGGDGLATFRPLEITNMAEAVSLRFHQVQMLDGDIFIE 363


>gi|258546002|ref|ZP_05706236.1| riboflavin biosynthesis protein RibD [Cardiobacterium hominis ATCC
           15826]
 gi|258518731|gb|EEV87590.1| riboflavin biosynthesis protein RibD [Cardiobacterium hominis ATCC
           15826]
          Length = 369

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 124/370 (33%), Positives = 183/370 (49%), Gaps = 9/370 (2%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  ++ D  +M AAL  +R  +  T+ NP V C+IVK G  +G+G     G PHAE  AL
Sbjct: 1   MTTAAQDIPWMQAALELARQGIFSTAPNPRVGCVIVKGGEAVGKGFHVRAGEPHAEAHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAG  ARGATAYV LEPC+H GR+PPCA  +I  G+ RVVV   DP+  V+G+G+  L 
Sbjct: 61  REAGAAARGATAYVNLEPCAHQGRTPPCADALIAAGVARVVVACRDPNPLVAGQGIARLQ 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI + + + E E +     +  R    R  +T+K+A S D    +A   S  IT   +
Sbjct: 121 AAGIDVTEGVCEEEAQALNSGFFRRITTGRPFVTVKLAASLDGKTALANGESQWITSEAA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIK 238
           +  VH  R  +DAI+ G G+++ D+  LT R    L    P+R+I+D   +   D+ +  
Sbjct: 181 RADVHYHRLAADAIIAGTGSIIRDNARLTARYPTELPNQPPLRVIIDSRLRTPRDAAVFD 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAA 297
               +P++IV   D          + + +     R  L  LL  L  RGV +  VE GA+
Sbjct: 241 DP--SPILIVCGMDARAPNYPAHVEWLRLPLVGGRVPLPALLDELGTRGVNNAFVEAGAS 298

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           +A +F+   L D I+LY +  ++G G        PL+                G+D+ L 
Sbjct: 299 LAGAFLEQNLADEILLYLAPCLLGSGARELVQLPPLQRLSDRMRARIDDCTPIGADLRLR 358

Query: 354 YIGKNLCLQE 363
              +  C Q 
Sbjct: 359 LTPETPCSQA 368


>gi|114319537|ref|YP_741220.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225931|gb|ABI55730.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 369

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 120/363 (33%), Positives = 175/363 (48%), Gaps = 12/363 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D  FM  ALR +R        NP+V C++V+DG+++G G     G PHAE  AL  
Sbjct: 4   FSPADNLFMGRALRLARRPQQPPHPNPAVGCVLVRDGLIVGEGWHERAGEPHAEAMALHR 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE+A GATAYVTLEPCSH+GR+PPC++ ++  G+ RVV  + DP+ +V+GRGL+ L   
Sbjct: 64  AGEQASGATAYVTLEPCSHHGRTPPCSEALLAAGVVRVVAAMTDPNPQVAGRGLRRLRAA 123

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +   +M  +       +  R    R  + LK A S D    MA   S  IT   ++ 
Sbjct: 124 GLEVATGLMAEQAAALNPGFTQRMRTGRPWLRLKSAASLDGRTAMASGESRWITSPQARA 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTA 240
            VH  RA+SDA+L GIGTVLADDP L  R  G++    P R +LD   +   D+ +++  
Sbjct: 184 DVHRWRARSDAMLTGIGTVLADDPRLDVRDAGIEAPRQPRRCVLDRDLRTPADAVLLRGE 243

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGA 296
                +    +              + +         DL   L  L G+G   +LVE G 
Sbjct: 244 GA--TLFHGPDVAAGQIRRLTDAGAHCVALPLADGRLDLGAALDWLGGQGCNEVLVEAGP 301

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +  +   + LVD  +LY +  ++G+   P      LE     +          G D+ L
Sbjct: 302 TLGGALSRAGLVDEWLLYLAPHLMGDAARPLLHWPGLETMSQRQPLRVQDCRLVGPDLRL 361

Query: 353 EYI 355
              
Sbjct: 362 TLR 364


>gi|289523035|ref|ZP_06439889.1| riboflavin biosynthesis protein RibD [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503578|gb|EFD24742.1| riboflavin biosynthesis protein RibD [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 365

 Score =  322 bits (825), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 124/331 (37%), Positives = 188/331 (56%), Gaps = 12/331 (3%)

Query: 1   MPVSS--FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
           M VS    +  +M   L  +R   G TS NP V C++VKD  ++G G     G PHAEV 
Sbjct: 3   MKVSEKRQNEYYMRIVLSLARRGTGRTSPNPRVGCVVVKDDKIVGTGFHRCPGSPHAEVM 62

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           AL  A + +RGAT YV LEPC HYGR+PPCA  I+E GI+RV +  +DP  +V GRG+++
Sbjct: 63  ALSMAKDMSRGATLYVNLEPCIHYGRTPPCAPLIVERGIKRVFISTEDPFPKVRGRGVEY 122

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L   G+ +V  ++  E +     +L    E R  ITLK A+S D  + ++   S  ITG 
Sbjct: 123 LRSHGVEVVSGVLSDEARWLNRGFLKVFEEGRPWITLKAAMSLDGDVALSDGSSRWITGR 182

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            S  + HLLRA++DA+LVGIGT+L DDPELT R   ++   P++IILD H ++ +++K+ 
Sbjct: 183 SSLKRSHLLRAEADAVLVGIGTILKDDPELTVRY--VEGEHPLKIILDTHLRIPINAKVF 240

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLV 292
           K   +  +++ ++   P        +   ++          D+K+++  L    V  LLV
Sbjct: 241 KEGDV--LVVTSKGSSPQKVEEIISRGAGVMQIPTDSRGFLDIKEMVCKLPSMDVHYLLV 298

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           EGG  V  SF +++L D + L+ +  ++G G
Sbjct: 299 EGGPNVLSSFFDAKLFDEMALFYAPKIMGRG 329


>gi|197335179|ref|YP_002155463.1| riboflavin biosynthesis protein RibD [Vibrio fischeri MJ11]
 gi|197316669|gb|ACH66116.1| riboflavin biosynthesis protein RibD [Vibrio fischeri MJ11]
          Length = 363

 Score =  322 bits (825), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 117/360 (32%), Positives = 185/360 (51%), Gaps = 20/360 (5%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
            M  A+  ++  +  T+ NP+V C++VKDG ++G G     G PHAEV AL +AG+EA+G
Sbjct: 1   MMQKAILLAKQGIYTTAPNPNVGCVLVKDGKIVGEGAHLKAGEPHAEVHALRQAGKEAQG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DR 128
           ATAYVTLEPCSHYGR+PPCA+ +I+ G+++V+  + DP+ +V+GRGL  L++ GI     
Sbjct: 61  ATAYVTLEPCSHYGRTPPCAEGLIKAGVKKVICAMVDPNPQVAGRGLAMLNEAGIETASG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++E++ +     +LTR    +  + LK+A S D    +    S  IT   ++  V   RA
Sbjct: 121 LLEADARALNPHFLTRMETGKPFVQLKMAASLDGKTALKNGVSQWITSKEARQDVQRYRA 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKII 237
           QS AIL    TV+ D+  L  R + L               PMR ILD    L+ D K+ 
Sbjct: 181 QSGAILSTAKTVIDDNASLNVRWSDLPPSIQESYQQAAIRQPMRFILDRQHALTSDLKLF 240

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGVTSLLVEGGA 296
           + +     I  ++N  P++      +    +  +  +LK+++  +     V  + VE GA
Sbjct: 241 QASGEVVTI-SSQNTHPIVTSENHIQCC--VDDEQLNLKEVVNKISRDFNVNHIWVEAGA 297

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +A S I   LVD +I+Y +  ++G  G        LE      +         G D+ +
Sbjct: 298 TLAASMIKENLVDELIIYLAPKLMGADGRSIINLIGLETMSETIDLDIKDIRMVGKDIRI 357


>gi|33861821|ref|NP_893382.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
 gi|33640189|emb|CAE19724.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
          Length = 362

 Score =  322 bits (825), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 100/357 (28%), Positives = 173/357 (48%), Gaps = 9/357 (2%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAG 64
            D ++M  A+  +    G TS NP V  +I+ K+G +I  G  +  G PHAE  A     
Sbjct: 7   IDIKWMKRAIYLASLGKGRTSPNPMVGAVILDKNGNLISEGFHSKSGMPHAEAMAFNNLK 66

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           ++AR  T YV LEPC H G++PPC   II  GI+RV V ++DPD R+SG+G++ L   GI
Sbjct: 67  KDARDGTIYVNLEPCCHQGKTPPCVDKIISFGIKRVFVSIEDPDKRMSGKGIKLLKDAGI 126

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V   + + E K    +++ + +   ++  +K A+S D  +G+    S  IT   S++ V
Sbjct: 127 KVHLGLCKKESKELNKSFIHKNITDNAYGVMKWAMSMDGRVGLKNGKSKWITNKDSRSLV 186

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H LRA  DAI++G  T+  DDP LT R  G++   P+R++      L + S +    L  
Sbjct: 187 HSLRASFDAIVIGGNTLRKDDPFLTSR--GIRNPEPLRVVFTKTLNLPVKSNLWDCKLAR 244

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            +++   +      L    + + I      +   L  +L  +G  ++  E G  +A S +
Sbjct: 245 TLVVYDASTADEKFLKRIPEGVEIEKLSSDNPILLSNLLAKKGCNNVFWECGPKLATSAM 304

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355
            +  +  ++ + +  ++G     +P  +          N       + G+D+ ++ I
Sbjct: 305 KAGCIQELMTFIAPKILGGVSSMNPFSDFEFTDMDEVFNLNEPETSFIGNDIYVKSI 361


>gi|327399584|ref|YP_004340453.1| riboflavin biosynthesis protein RibD [Hippea maritima DSM 10411]
 gi|327182213|gb|AEA34394.1| riboflavin biosynthesis protein RibD [Hippea maritima DSM 10411]
          Length = 375

 Score =  322 bits (825), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 110/368 (29%), Positives = 180/368 (48%), Gaps = 17/368 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           V + D  FM  A+  ++     T  NP V  +IVK+G +IG+G     G PHAEV+A+  
Sbjct: 12  VMNKDELFMKKAIELAKKAKNKTCPNPLVGAVIVKEGKIIGQGYHKKAGLPHAEVEAINS 71

Query: 63  AGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             +    + AT YV LEPC+HYGR+PPC+  II  GI+RVV+ + D + + +  G++ L 
Sbjct: 72  VKDRNQLKDATIYVNLEPCNHYGRTPPCSLAIINSGIKRVVIGMRDIN-KKASGGIERLK 130

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI +   ++E E K     ++   + ++    +K A+  +  I + G  S  IT   +
Sbjct: 131 GAGIDVKVGVLEDEAKKLNEVFIENTLNRKPFFIMKAAMLLNGCIAVKGGVSQWITSEKA 190

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H LR  + A+LVGI T++ DDP LTCR+ G     P R++LD + K+ + +KI   
Sbjct: 191 RRFSHRLRGTNSAVLVGINTIIMDDPLLTCRIKGY--RQPKRVVLDMNLKIPISAKIFSE 248

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295
                 II ++N D       R  ++NI+ CD      +   L   L+   + S +VEGG
Sbjct: 249 YPNNIYIITSKNSDDAKKRILRAMDVNIVECDTENGEFNPADLSEKLLENEICSCIVEGG 308

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGE------GGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           +     F+ ++L +   L  +  + G        G  +P ++       +  +    G D
Sbjct: 309 SRTHGYFLKNKLYNKAYLLYAPKITGSYGAFNVAGFDAP-KDLNEAIKLIDTKCKKIGDD 367

Query: 350 VCLEYIGK 357
           +  E   K
Sbjct: 368 ILFEGYFK 375


>gi|182678211|ref|YP_001832357.1| riboflavin biosynthesis protein RibD [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634094|gb|ACB94868.1| riboflavin biosynthesis protein RibD [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 401

 Score =  321 bits (824), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 144/383 (37%), Positives = 202/383 (52%), Gaps = 26/383 (6%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P S  D  +M+ AL  S+  +G T+ NPSV  +IVKDG ++GRG T  GG PHAE +AL 
Sbjct: 19  PDSETDTHYMAEALALSQQGLGRTAPNPSVGAIIVKDGKIVGRGWTQPGGRPHAETEALA 78

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           EAG+ ARGAT YVTLEPCSH+G +PPCA  II  G+ RVV  ++DPD RVSGRG + L +
Sbjct: 79  EAGDAARGATLYVTLEPCSHFGVTPPCASAIIAAGVARVVCALEDPDPRVSGRGYRMLRE 138

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG-----SVPIT 175
            GI +   ++E+E +     ++ R   +R  +TLK+A++ D  +            + IT
Sbjct: 139 AGIAVTHGVLEAEARRANLGHIRRVQAQRPMVTLKLAMTADGFVASTAPREGQAPRLKIT 198

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILD 225
           G  +   VH +RAQ DAI++GIGT LADDP LT RL+G +E            P RI+LD
Sbjct: 199 GAAANEHVHRMRAQHDAIMIGIGTALADDPMLTVRLSGQEEMGKAEMGKVAARPRRIVLD 258

Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY-------CDCRDLKKL 278
            H +L L S +++TA   P +++T +D    A+A  ++   ++            DL   
Sbjct: 259 SHLRLPLQSHLVQTAADYPTLVLTRDDASAEAMARLREASVVVETLESAQSTPSLDLSAA 318

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG---EGGIPSPLEEGYLE 335
           L  L   G+T +  EGG  VA S I     D +IL  S  ++G   EG  P         
Sbjct: 319 LQRLASLGLTRIFSEGGPRVAESLIGQHAADEVILLESPAILGAGVEGLSPRARAILGNL 378

Query: 336 KNFMCVRRDYFGSDVCLEYIGKN 358
             +          D    Y   +
Sbjct: 379 TLYRPAETRMIEEDRLTRYERID 401


>gi|90419410|ref|ZP_01227320.1| riboflavin biosynthesis protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336347|gb|EAS50088.1| riboflavin biosynthesis protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 383

 Score =  321 bits (824), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 168/368 (45%), Positives = 222/368 (60%), Gaps = 12/368 (3%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEV 57
           P +  D RFM+AA+R+++ HVG T+TNPSVA LIV+D      ++GRGVTA GG PHAE 
Sbjct: 14  PATDADRRFMAAAIRYAQRHVGRTATNPSVATLIVRDDGTGPRIVGRGVTAIGGRPHAET 73

Query: 58  QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            AL EAGE ARGATAYVTLEPC+H+GR+PPCA+ ++  GI RVV    DPD RV GRG  
Sbjct: 74  GALAEAGELARGATAYVTLEPCAHHGRTPPCAEALVTAGIARVVSAAADPDPRVDGRGHA 133

Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
            L   G+ +  R+M +E    +  YLTR    R  I LK+A+S+D  IG+ G G V ITG
Sbjct: 134 ILRAGGLSVTPRVMAAEAAAPISGYLTRHGAGRPEILLKMALSRDGRIGIRGGGQVKITG 193

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
            ++  Q HL+RA+ D IL+G GT   DDP L CRL G+ + SP RI+LDP  +   D  I
Sbjct: 194 AVADAQTHLVRARHDTILIGAGTAQEDDPRLDCRLPGMADRSPNRIVLDPRLRTPPDLTI 253

Query: 237 IKTALLAPVIIVT-ENDDPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTS 289
            +TA   P +I T  + DP    A  ++ +  I C+         L +LL  L   GV S
Sbjct: 254 ARTAAETPTLIATLASADPERRAALARQGVQFIACEADPETGRIALPELLEDLAATGVAS 313

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           +LVEGGA    SF++S LVD +IL +  + IGE G+ +P++       F  VR   FG D
Sbjct: 314 VLVEGGAETGASFLDSDLVDRLILVQGPVEIGEEGVRAPIDVATARCRFRLVREYRFGDD 373

Query: 350 VCLEYIGK 357
              E+  +
Sbjct: 374 HWYEFERR 381


>gi|332286796|ref|YP_004418707.1| putative riboflavin-specific deaminase [Pusillimonas sp. T7-7]
 gi|330430749|gb|AEC22083.1| putative riboflavin-specific deaminase [Pusillimonas sp. T7-7]
          Length = 374

 Score =  321 bits (824), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 114/358 (31%), Positives = 178/358 (49%), Gaps = 15/358 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D  +M  AL  +   + +T+ NP VACLIV+DG ++  G T   G PHAE+ AL +A   
Sbjct: 3   DEGWMRQALHLAESVLYITAPNPRVACLIVRDGRLLAEGATRQAGGPHAEIVALRQAAER 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G +  GAT YVTLEPCSHYGR+PPC   +I     RVV+ + DP+  V G+G+  L   G
Sbjct: 63  GIDTAGATVYVTLEPCSHYGRTPPCVDALIAARPARVVIAMGDPNPLVHGQGIAKLRATG 122

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +   +   E       ++ R   K   + LK+A S D  I +A   S  ITG  ++  
Sbjct: 123 IAVTTDICTEEALAINPGFVARMTRKTPWLWLKLASSLDGRIALANGQSQWITGTAARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H  RA+S  +L G+GTVLADDP++  R        P++ I+D  F++   ++I      
Sbjct: 183 GHHWRARSCVVLSGVGTVLADDPQMNVRHVE-TARPPIKAIVDTRFQVMEQARIFDG--- 238

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAV 298
            P  + T   DP        +N+ ++         DL  L+  L    +  + VE GA +
Sbjct: 239 TPTWVFTCVSDPEKVHRLADRNVQVVELPAAAGRVDLHALMRWLGEHDINEVHVEAGARL 298

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG---GIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           + + + ++  D +++Y + +++GEG       PL++    + F  +       DV L 
Sbjct: 299 SGALLQAQCTDELLVYMAPVLLGEGIGMARMEPLQQLAQAQRFEFIHTACVAPDVRLR 356


>gi|313496881|gb|ADR58247.1| RibD [Pseudomonas putida BIRD-1]
          Length = 376

 Score =  321 bits (824), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 128/366 (34%), Positives = 189/366 (51%), Gaps = 20/366 (5%)

Query: 1   MPVSS--FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
           MP  +   DA +M+ AL  +R  +  T  NP V C+IV+DG V+G G     G PHAEV 
Sbjct: 1   MPSQAAILDAHYMARALELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVH 60

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           AL +AGE ARGA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV  + DP+ +V+G+GL+ 
Sbjct: 61  ALRQAGELARGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGLRR 120

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L++ GI +   ++E+E +     +L R       +  K+A+S D    MA   S  ITG 
Sbjct: 121 LAEAGIEVASGVLEAEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGP 180

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPH 227
            +++ V  LRA+S  +L    +VLAD+  +T R   L             +P+R+++D  
Sbjct: 181 AARSAVQRLRARSSVVLTSAASVLADNARMTVRGAELGLDAETTALALSRTPLRVLVDGR 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTE-NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286
            +LSL S   +     P ++VT   DDP  A A  +           DL  LL  L  RG
Sbjct: 241 LRLSLASPFFQ---AGPALVVTAVADDPRYAAAGHELLSLPGDNGQVDLGALLHALAARG 297

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRR 343
           V  +L+E GA +  +F    LVD   L+ +   +G    P    P+++            
Sbjct: 298 VNEILLEAGAGLVGAFARQGLVDEYQLFVAGTFLGSQARPLLDWPMDKMSEAPRLKITEM 357

Query: 344 DYFGSD 349
              G D
Sbjct: 358 RAVGDD 363


>gi|301336274|ref|ZP_07224476.1| riboflavin-specific deaminase [Chlamydia muridarum MopnTet14]
          Length = 368

 Score =  321 bits (824), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 106/349 (30%), Positives = 167/349 (47%), Gaps = 5/349 (1%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S     FM  A+            NP V C+IVK+G VIG G     G PHAEV A+++
Sbjct: 4   LSEQQLFFMRKAVALGERGRLFAPPNPWVGCVIVKNGCVIGEGWHKGIGFPHAEVCAIQD 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           +     GA  YVTLEPC H+GR+PPC   +I+  +  V V + DPD RV  +G+  L + 
Sbjct: 64  SPCSLEGAEVYVTLEPCCHFGRTPPCVDLLIKSKVAAVYVALLDPDPRVCKKGIARLREA 123

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   +   E +  L  YL ++      + +K A S D         S  I+G +++ 
Sbjct: 124 GIPVYVGIGSKEAQASLQPYLHQRETGLPWVVMKTAASLDGQTADREGRSQWISGELARA 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
            V  LRA+S A++VG  TV  D+P L+ R  L  L E  P+R+++D   K+ LD+++  +
Sbjct: 184 DVGKLRAESQAVIVGSRTVCLDNPRLSARQALGNLYERQPLRVVIDSLGKVPLDARVWNS 243

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIY--CDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                ++  TE              + +        DL++LL  L  +G   +L+EGGA 
Sbjct: 244 DSGKSLLATTEQCSLEYMQRLEDLGVEVWQSSSQQVDLRELLQTLAAKGCLQVLIEGGAQ 303

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
           +  +F    LV++ ++Y     +G+ G P   +      N   V+    
Sbjct: 304 LHSAFWKEHLVNAGVIYWGPKFLGDQGSPMLQDLQVCLANAKSVKITEI 352


>gi|87301124|ref|ZP_01083965.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 5701]
 gi|87284092|gb|EAQ76045.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 5701]
          Length = 354

 Score =  321 bits (824), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 115/356 (32%), Positives = 179/356 (50%), Gaps = 11/356 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  AL  +    G TS NP V  L++  +G+++G G  A  G PHAEV AL +AGE ARG
Sbjct: 1   MERALGLAALAQGRTSPNPLVGALVLDANGLLVGEGFHAAAGRPHAEVGALAQAGERARG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-IIVDR 128
            T  VTLEPC H+GR+PPC++ +I  GIRRV+V ++DPD RV+G+G++ L Q G  ++  
Sbjct: 61  GTLVVTLEPCCHHGRTPPCSEAVIAAGIRRVIVAMEDPDPRVAGQGIEALRQAGAEVLVG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + +SE +    A+  R    R    LK A+S D    +    S  I+G  S+  VH LRA
Sbjct: 121 VRQSEARNLNAAFCHRLRSGRPLGILKWAMSVDGRTALPNGASQWISGPASREWVHRLRA 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA++VG GT+  DDP LT R  G +   P+R+++     L   +++   +  AP ++ 
Sbjct: 181 RCDAVIVGGGTLRTDDPLLTSR--GRRAIEPLRVVISRELGLPEQAQLWDQS-TAPTLVA 237

Query: 249 TENDDPVL-ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
              + P    L      +  +     +  +L+  L  RG   +L E G ++A + +    
Sbjct: 238 HGPEAPEPDRLQLDALGVERLELAGCEPLELMEALAQRGCNQVLWECGPSLAAAALRQGC 297

Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIGKN 358
           V  +    +  ++G     +PL +  L    M +          G D+  E  G  
Sbjct: 298 VQRVAAVMAPKLLGGTAARTPLGDLQLNSMAMALPWREQGLSRSGDDLIWELNGPE 353


>gi|254525413|ref|ZP_05137465.1| riboflavin biosynthesis protein RibD [Prochlorococcus marinus str.
           MIT 9202]
 gi|221536837|gb|EEE39290.1| riboflavin biosynthesis protein RibD [Prochlorococcus marinus str.
           MIT 9202]
          Length = 364

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 100/357 (28%), Positives = 175/357 (49%), Gaps = 8/357 (2%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           ++M  A+  +      TS NP V  +I+ K+G ++  G     G PHAE  A     ++ 
Sbjct: 10  KWMKRAIFLASLGKNTTSPNPKVGAVILDKNGKLVSEGFHFKSGLPHAEAMAFNNLKQDV 69

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           +G T YV LEPC H G++PPC   +I  G+++V + ++DPD RVSG+G++ L + G+ V 
Sbjct: 70  KGGTMYVNLEPCCHQGKTPPCVDKVISSGLKKVYISIEDPDKRVSGKGIKLLKKAGVQVH 129

Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             + + E      A++ R   K++   LK A+S D  I +    S  IT   S++ VH L
Sbjct: 130 LGLCKKESLELNKAFIHRNTTKKAFGVLKWAMSIDGRIALKNGKSKWITNKESRSLVHSL 189

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R++ DAI++G  T+  D+P LT R  G +   P+R++      L   S +        ++
Sbjct: 190 RSEFDAIIIGGNTLRRDNPLLTTR--GSKNPEPLRVVFTKSLDLPSKSNLWDCGEAKTLV 247

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           I   +      L+   K + +      + + +  IL  RG   +L E G+ +A + I S 
Sbjct: 248 IYDSSTANESFLSRIPKCVEVEKVSSDNPELISKILAKRGCNKVLWECGSRLATAAIKSN 307

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQE 363
            +  II + +  ++G     +P  +   E+    ++     SD  +  IG ++C++ 
Sbjct: 308 CIQEIITFIAPKILGGENNMNPFGDFEFEEMDEIIKL----SDSKISLIGNDICVKG 360


>gi|288574956|ref|ZP_06393313.1| riboflavin biosynthesis protein RibD [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570697|gb|EFC92254.1| riboflavin biosynthesis protein RibD [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 356

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 123/368 (33%), Positives = 184/368 (50%), Gaps = 19/368 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M     D  +M  AL  +    G TS NP V C+I +DG ++G G     G PHAE +AL
Sbjct: 1   MKSRVEDVTYMRRALSLAMRGTGYTSPNPMVGCVIARDGEILGEGYHRRCGAPHAEREAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             A     GATAYVTLEPCSH+G++PPCA  ++E GI R VV   DPD RVSGRG++ L 
Sbjct: 61  MSAVGGVAGATAYVTLEPCSHHGKTPPCAPALVEAGIGRCVVATVDPDPRVSGRGIEILR 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             G+ +   ++E E +     ++   +     +T+K A+S D  + +    S  IT   S
Sbjct: 121 SAGVDVSVGVLEEECRWLNRGFIKGALAGLPWVTVKAAISLDGDMSLPDGKSKWITNGTS 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           + + HLLR++SDA++VG GTV ADDP LT R   +   SP+ +++     +  + ++   
Sbjct: 181 RVKAHLLRSESDAVMVGRGTVTADDPALTVR--DVPGKSPIPVVI---GGIDENRRVFLD 235

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
                 II T             + +        DL+ +L  L G GV  LLVEGG  + 
Sbjct: 236 DR---CIIYT-----KRFAGLNGERVIPEKNGQVDLETVLRDLYGSGVRRLLVEGGGRII 287

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
            S ++  LVD + L+ +  ++G+G   +P   L       N   +       D+ LE + 
Sbjct: 288 SSLLSDGLVDEVSLFVAPKIMGQGQTMTPGMILSSMEESMNLSLISCRGQDGDLWLEGVF 347

Query: 357 KNLCLQEL 364
              C ++L
Sbjct: 348 P--CSRDL 353


>gi|116072381|ref|ZP_01469648.1| Riboflavin biosynthesis protein RibD [Synechococcus sp. BL107]
 gi|116064903|gb|EAU70662.1| Riboflavin biosynthesis protein RibD [Synechococcus sp. BL107]
          Length = 354

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 107/334 (32%), Positives = 172/334 (51%), Gaps = 8/334 (2%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +M  AL  +    G TS NP V  +++ + G ++G G  A  G PHAEV AL +AG+ A+
Sbjct: 5   WMRRALALAGLADGHTSPNPLVGAVVLDRHGRLVGEGFHARAGEPHAEVGALAQAGDRAK 64

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           G T  VTLEPC H+GR+PPC++ ++  GI RVV+ ++DPD RV G G+  L   G+ ++ 
Sbjct: 65  GGTLVVTLEPCCHHGRTPPCSEAVLRAGIARVVIALEDPDPRVDGGGMAQLRAAGLDVIS 124

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++++E      A+L R    R   TLK A+  D    ++   S  I+G  ++  VH LR
Sbjct: 125 GVLQAEAAFQNRAFLHRVRTGRPWGTLKWAMGLDGRTALSNGESQWISGPTARRWVHQLR 184

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           ++SDA++VG GTV ADDP LT R  G ++  P+R++L    +L + +++  T+L + ++ 
Sbjct: 185 SKSDAVIVGGGTVRADDPLLTSR--GRRKPEPLRVVLSRSMELPVTAQLWDTSLASTLVA 242

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
                 P             +     + K L+  L  RG   +L E G  +A + I    
Sbjct: 243 ----HGPEAQEQPFPHGPQRLLLSASEPKPLMQELANRGCNRVLWECGPELAAAAIRQGC 298

Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341
           +  +    +  ++G     +PL E         V
Sbjct: 299 IQEVAAVVAPKLMGGVAARTPLGELGFTAMDQVV 332


>gi|226355049|ref|YP_002784789.1| riboflavin biosynthesis protein [Deinococcus deserti VCD115]
 gi|226317039|gb|ACO45035.1| putative Riboflavin biosynthesis protein ribD [Deinococcus deserti
           VCD115]
          Length = 368

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 115/361 (31%), Positives = 178/361 (49%), Gaps = 17/361 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  +   +G TS NP V C+IV+DG V+GRG     G PHAEV AL EAGE 
Sbjct: 8   DTEYMRLALNEAARGMGRTSPNPPVGCVIVRDGQVVGRGFHPRAGEPHAEVFALREAGEY 67

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSH+GR+PPCA  ++  G+ +VV+   DP+ RV G+G   L + GI +
Sbjct: 68  ARGATAYVTLEPCSHFGRTPPCADALVAAGVSQVVIAALDPNPRVGGQGASRLREAGIEV 127

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP-----ITGFISK 180
           +  + E E       + +  +  R  +  K A++ D  +              +TG  S+
Sbjct: 128 IVGVAEEEALRQQAGFRSLVMRARPWVIYKYAMTLDGKVAALDASGRGEANGLVTGLASR 187

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            +V   R + D I VG GTV+ DDP LT R        P  ++ D   + S  +++I+  
Sbjct: 188 ARVMAWRNEVDGIAVGSGTVITDDPLLTTR-GVEGGRDPRPVVFDGQGRTSASARVIRPG 246

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
               V++     D             +IY       + L  L     ++L VEGG  +A 
Sbjct: 247 A---VVVTAPGMDMSR---HEAAGAQVIYA--TQPSEALAELGRLNFSTLFVEGGPTLAG 298

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           S +++ LVD +  + +  ++G G  P  +P+   +  +    V  +  G D+ +  +  +
Sbjct: 299 SLLDAGLVDEVRAFVAPKLLGAGLNPLTAPVRPMHEAQVLRDVTFESLGPDLLIRGLLND 358

Query: 359 L 359
           +
Sbjct: 359 I 359


>gi|78779743|ref|YP_397855.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. MIT 9312]
 gi|78713242|gb|ABB50419.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. MIT 9312]
          Length = 364

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 104/356 (29%), Positives = 176/356 (49%), Gaps = 8/356 (2%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           ++M  A+  +    G TS NP V  +I+ K+G +I  G     G PHAEV A     +E 
Sbjct: 10  KWMKRAIFLASLGKGKTSPNPLVGAVILDKNGNLISEGFHYKAGEPHAEVMAFNNLKKEV 69

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           +    YV LEPC H+G++PPC   +I  GI+++ + + DPD RVSG+G++ L Q GI V 
Sbjct: 70  KDGYMYVNLEPCCHHGKTPPCVDKVISSGIKKIYISIQDPDKRVSGKGIKLLKQAGIKVH 129

Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             + + E      A++ R + ++S   LK A+S D  IG+    S  IT   S++ VH  
Sbjct: 130 LGLCKKESLELNKAFIYRTITEKSFGVLKWAMSIDGRIGLKNGKSKWITNKDSRSLVHSF 189

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R + DAI++G  T+  D+P LT R  GL+   P+R++      L   S +        ++
Sbjct: 190 RTEFDAIIIGGNTLRQDNPLLTTR--GLKNPEPLRVVFTKTLDLPPKSNLWDCDEAKTLV 247

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           I   +      L    + + +      + + +  +L  RG   +L E G  +A S + S 
Sbjct: 248 IYDSSTANEKFLTNIPQCVEVEKVSSDNPELISKLLAKRGCNKVLWECGPKLATSAVKSD 307

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362
            ++ II + +  ++G     +PL +   E+    ++     SD  +  IG ++C++
Sbjct: 308 CINEIISFIAPKILGGQTNMNPLGDFQFEEMHEIIKL----SDSQVSLIGNDICVK 359


>gi|115524816|ref|YP_781727.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris
           BisA53]
 gi|115518763|gb|ABJ06747.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Rhodopseudomonas palustris BisA53]
          Length = 383

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 154/362 (42%), Positives = 202/362 (55%), Gaps = 12/362 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D R+M  AL   R  +G T  NP+V  +IVKDG+++GRG T   G PHAEV+AL  AGE 
Sbjct: 21  DLRYMQLALALGRRGLGNTWPNPAVGAVIVKDGVIVGRGWTQPRGRPHAEVEALARAGEA 80

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGAT YVTLEPCSH+G++PPC   +IE G+ RVV  ++DP+  V+G+G   L   GI V
Sbjct: 81  ARGATLYVTLEPCSHHGKTPPCCDAVIEAGLARVVAAIEDPNPEVAGQGHAKLRAAGIKV 140

Query: 127 DRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D    +      HA   R++   R H+ LK+A+S D+ I  AG   V ITG  +  QV L
Sbjct: 141 DVGCGAVDAARDHAGHFRKIRDGRPHVILKLALSSDDKIAAAGRKRVAITGAAANAQVQL 200

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQ DAILVGIGTVLADDPELTCRL G+   SP+R++LD   ++   SK++ +A   P+
Sbjct: 201 LRAQCDAILVGIGTVLADDPELTCRLPGMAARSPVRVVLDRALRIPGASKLVLSARQTPL 260

Query: 246 I-IVTENDDPVLALAFRKKNINIIYCD------CRDLKKLLTILVGRGVTSLLVEGGAAV 298
             I  E  +   A         ++           DL  +L +L  RGVT L+VEGGA V
Sbjct: 261 WLIAAETAEAAAAARLGAAGAQVLRLPVEPTARGLDLNAVLKLLAERGVTRLMVEGGAQV 320

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           A +F+    VD I L+R    IG+ GIP+    PL        F          D    +
Sbjct: 321 ASTFVAQNFVDEIWLFRGSQPIGDDGIPALQTLPLTAITASPAFRVRDSQTLSPDTLTIF 380

Query: 355 IG 356
             
Sbjct: 381 ER 382


>gi|307945264|ref|ZP_07660600.1| riboflavin biosynthesis protein RibD [Roseibium sp. TrichSKD4]
 gi|307771137|gb|EFO30362.1| riboflavin biosynthesis protein RibD [Roseibium sp. TrichSKD4]
          Length = 376

 Score =  321 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 153/374 (40%), Positives = 219/374 (58%), Gaps = 18/374 (4%)

Query: 1   MPVSSF--DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-----VIGRGVTAYGGCP 53
           M  +    D RFM+AA R++R  +G    NP VA LIV++       V+GRG T+  G P
Sbjct: 1   MAFTQMQTDLRFMAAAERYARRGLGEVWPNPPVAALIVRENENGQHVVVGRGRTSKPGGP 60

Query: 54  HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           HAEV AL  AG  A+GAT YVTLEPCSHYGR+PPC+  ++E GI+RVV+ + DP+ RV+G
Sbjct: 61  HAEVNALTMAGTAAKGATCYVTLEPCSHYGRTPPCSVALVEAGIKRVVIGMRDPNPRVAG 120

Query: 114 RGLQWLSQKGIIVDRMMES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172
           RG++ L + G+ V+  +     +     ++ R  + R  + LK+A+S+D  IG  G G V
Sbjct: 121 RGIKMLEEAGVEVEVGVHEVACQELYSGFIMRITQHRPKVLLKLAISKDGFIGKKGEGQV 180

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
            I+  +S   VH  R+  DAI+VGIGT LADDP+LTCRL G+ E SP+R+I+D   +L L
Sbjct: 181 RISNPLSMRHVHGFRSTYDAIMVGIGTALADDPQLTCRLPGMAERSPVRVIIDSDARLPL 240

Query: 233 DSKIIKTALLAPVIIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGV 287
            SK++ TA   PV +V  +  P     A  K  + II     D       + + L  RG+
Sbjct: 241 ASKLVMTAAEVPVWLVCSSTAPAERIEALSKAGVLIIRVPTTDCGIEPSVVTSALSTRGI 300

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRR 343
           T L+VEGG+ +A +F+ + LVD + +    I +GEGGIP      LE+   + +F  V  
Sbjct: 301 TRLMVEGGSRIASAFLKAGLVDDMCIVTGDIEVGEGGIPVLHDLRLEDVVADPSFAKVEA 360

Query: 344 DYFGSDVCLEYIGK 357
              GSD  + Y+ +
Sbjct: 361 GVIGSDQFI-YLRR 373


>gi|221068623|ref|ZP_03544728.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni KF-1]
 gi|220713646|gb|EED69014.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni KF-1]
          Length = 367

 Score =  321 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 108/355 (30%), Positives = 167/355 (47%), Gaps = 12/355 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA---G 64
            +M+ AL  +   + L+S NP V C+IV     +IG+G T   G PHAEV AL +A   G
Sbjct: 4   FYMNKALEQAAQALFLSSPNPRVGCVIVDASDRIIGQGFTQQAGGPHAEVMALRDAAAKG 63

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            + RGATAYVTLEPCSH+GR+ PC   +I  GI +VV  + DP+ +V+G+G + L   G+
Sbjct: 64  NDVRGATAYVTLEPCSHHGRTGPCCDALIAAGIAKVVGALTDPNPQVAGQGFERLRAAGV 123

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +      +E +     + +R +     + +K A S D +  +    S  IT   ++   
Sbjct: 124 DVEIGPGAAESRELNIGFFSRMIRGTPWVRMKAASSLDGVTALHNGQSQWITSAAARADG 183

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  RA++  IL GIGTVL D+P L  R +      P   ++D    +  D+ ++K     
Sbjct: 184 HAWRARACTILTGIGTVLEDNPRLNVR-DQPTPRQPRIAVVDSKLDIPPDAHVLKAPSGC 242

Query: 244 PVIIVTENDDPVLALAFRKKNINIIY--CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            +   + N   +  L      +  +       DL  LL  L  RG   L VE G  +  S
Sbjct: 243 FIYTCSINQSKIEKLRALGATVIAMPNAAGKVDLAALLRDLAQRGTNELHVEAGFKLNGS 302

Query: 302 FINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCL 352
            I   LVD ++ Y++  ++G G +      PL+                G D+ +
Sbjct: 303 LIREGLVDELLFYQAPKLLGTGAMGIANFGPLDSLEQGLPLEFHDVARMGPDLRI 357


>gi|269121379|ref|YP_003309556.1| riboflavin biosynthesis protein RibD [Sebaldella termitidis ATCC
           33386]
 gi|268615257|gb|ACZ09625.1| riboflavin biosynthesis protein RibD [Sebaldella termitidis ATCC
           33386]
          Length = 363

 Score =  321 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 119/360 (33%), Positives = 189/360 (52%), Gaps = 13/360 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D ++M  AL  +   +G  + NP V  ++VKDG V+G+G     G PHAEV AL+EAG+
Sbjct: 1   MDKKYMEMALEIAEKGLGHVNPNPLVGAVVVKDGTVVGKGYHGVYGGPHAEVYALDEAGK 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            A GA  YVTLEPCSHYG++PPCA+ IIE GI+R  V   DP+  VSG+G++ L +  I 
Sbjct: 61  SAEGADIYVTLEPCSHYGKTPPCAKKIIESGIKRCFVGSIDPNPLVSGKGIEMLKENDIE 120

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V   +++ E      A+     EK  ++ LK A++ D  I      S  I+   ++ +V 
Sbjct: 121 VHTGVLKEECDNINKAFFKYIKEKIPYLFLKCAITLDGKIASRNGDSKWISNETAREKVQ 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             R +   I+VGIGTVL D+P LT R+      +P+RII+DPH K++ +  II       
Sbjct: 181 FYRNKFMGIMVGIGTVLNDNPRLTARIE--NGVNPLRIIVDPHLKVNTELNIISNNYDKK 238

Query: 245 VIIVTENDDPVLALAFRKKN---INIIYCDCRDL--KKLLTILVGRGVTSLLVEGGAAVA 299
            II+T  ++   A     +N   I  I     +     +L  L    + S+L+EGG  + 
Sbjct: 239 TIIITSENNTGTAKYSELENEFGIKFITLPDYEFSVSDILRELGRAKIDSVLLEGGEKMI 298

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354
               + +L+D   ++ S  ++G+    S +     EK         ++ + +G+++ +E+
Sbjct: 299 SKAFSEKLIDGGEIFISDKILGDSSGKSFISGFSTEKISDSIILRNIKYNLYGNNIGVEF 358


>gi|94265528|ref|ZP_01289276.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific
           deaminase-like [delta proteobacterium MLMS-1]
 gi|93453969|gb|EAT04315.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific
           deaminase-like [delta proteobacterium MLMS-1]
          Length = 374

 Score =  321 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 133/372 (35%), Positives = 190/372 (51%), Gaps = 22/372 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ D  +M  AL  +R  VG T+ NP V  ++VK+G V+G+G     G PHAE +AL  
Sbjct: 1   MTAADLTYMRLALAEARKGVGKTAPNPCVGAVVVKNGRVVGKGWHRKIGQPHAEAEALRA 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A GAT YVTLEPC+H+GR+PPC++ II  GIRRVV  + DP   V+  G + L   
Sbjct: 61  AGEAAAGATIYVTLEPCNHHGRTPPCSEAIIAAGIRRVVYGLADPH-EVARGGAKRLESA 119

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ ++  ++  E +     ++ R    R  + LK AVS D  I  A   S  ITG  ++ 
Sbjct: 120 GLEVLGGVLADECRRLNLPFIKRVTCGRPWVLLKAAVSLDGRIAAATGHSQWITGPPARR 179

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-QEHSPMRIILDPHFKLSLDSKII-KT 239
             H LR QSDAILVG GTVLADDP LT RL G  +   P+R++LD   +    ++++ + 
Sbjct: 180 LAHRLRQQSDAILVGSGTVLADDPSLTTRLPGGRRGRDPLRVVLDSRLQTPPTARMLSQQ 239

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCD--------------CRDLKKLLTILVGR 285
           +  A  I          A A       ++  +                DL ++L  L   
Sbjct: 240 SPAATWIFCAPEAATERAAALEAAGARVVRLEPTPGGQSGLEPNFSGLDLWQVLRELAAN 299

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCV 341
           GV  LLVEGG  V  SF+   L D  +   + ++IG  G+P  +PL    ++K      V
Sbjct: 300 GVNQLLVEGGGRVHGSFLRQNLADEAVFCIAPLLIGADGLPVVAPLNCKRVDKAPRLREV 359

Query: 342 RRDYFGSDVCLE 353
                G D+ L 
Sbjct: 360 SSRRLGDDIMLR 371


>gi|15618780|ref|NP_225066.1| riboflavin deaminase [Chlamydophila pneumoniae CWL029]
 gi|15836404|ref|NP_300928.1| riboflavin deaminase [Chlamydophila pneumoniae J138]
 gi|16752168|ref|NP_445535.1| riboflavin-specific deaminase [Chlamydophila pneumoniae AR39]
 gi|33242231|ref|NP_877172.1| riboflavin-specific deaminase [Chlamydophila pneumoniae TW-183]
 gi|6225949|sp|Q9Z735|RIBD_CHLPN RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
           RecName:
           Full=Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase; Includes: RecName:
           Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|4377188|gb|AAD19009.1| Riboflavin Deaminase [Chlamydophila pneumoniae CWL029]
 gi|7189911|gb|AAF38776.1| riboflavin-specific deaminase [Chlamydophila pneumoniae AR39]
 gi|8979245|dbj|BAA99079.1| riboflavin deaminase [Chlamydophila pneumoniae J138]
 gi|33236742|gb|AAP98829.1| riboflavin-specific deaminase [Chlamydophila pneumoniae TW-183]
          Length = 376

 Score =  321 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 113/363 (31%), Positives = 173/363 (47%), Gaps = 13/363 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S     FM  A+            NP V C++V++  +IG G  AY G PHAE  A++ 
Sbjct: 4   FSEQQLFFMRRAIEIGEKGRITAPPNPWVGCVVVQENRIIGEGFHAYAGGPHAEELAIQN 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A     G+  YV+LEPCSH+G  PPCA  +I+  + RV V + DPD +V+G+G+  L Q 
Sbjct: 64  ASMPISGSDVYVSLEPCSHFGSCPPCANLLIKHKVSRVFVALVDPDPKVAGQGIAMLRQA 123

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   + ESE +  L  YL ++        LK A S D  +  +   S  IT   +++
Sbjct: 124 GIQVYVGIGESEAQASLQPYLYQRTHNFPWTILKSAASVDGQVADSQGKSQWITCPEARH 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKT 239
            V  LRA+S AILVG  TVL+DDP LT R     L    P+R++LD    +   SK+   
Sbjct: 184 DVGKLRAESQAILVGSRTVLSDDPWLTARQPQGMLYPKQPLRVVLDSRGSVPPTSKVFD- 242

Query: 240 ALLAPVIIVTENDDPV-LALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEG 294
              +P + VT    P          ++ ++  +      DL K+   L  + +  +LVEG
Sbjct: 243 -KTSPTLYVTTERCPENYIKVLDSLDVPVLLTESTPSGVDLHKVYEYLAQKKILQVLVEG 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL---EKNFMCVRRDYFGSDVC 351
           G  +  S +  R V+S++LY   +++G+   P     G L               G+ + 
Sbjct: 302 GTTLHTSLLKERFVNSLVLYSGPMILGDQKRPLVGVLGNLLESASPLTLKSSQILGNSLK 361

Query: 352 LEY 354
           + +
Sbjct: 362 VVW 364


>gi|317402603|gb|EFV83165.1| riboflavin biosynthesis protein ribd [Achromobacter xylosoxidans
           C54]
          Length = 386

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 116/364 (31%), Positives = 181/364 (49%), Gaps = 16/364 (4%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P  S D  +M  AL  ++  +  T+ NP V C+IV+DG V+G G T   G PHAEV AL 
Sbjct: 5   PSESDDLSWMRRALALAQTVMYSTAPNPRVGCVIVRDGRVLGEGATQPPGGPHAEVCALR 64

Query: 62  EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           +A   GE   GAT YVTLEPCSH+GR+PPC   ++     RVVV + DP+  V+G+GL  
Sbjct: 65  DAQARGESVAGATVYVTLEPCSHFGRTPPCVDALLAAAPARVVVAIGDPNPLVNGKGLAR 124

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L Q GI +   +   E       +++R         LK+A S D    +    S  ITG 
Sbjct: 125 LRQAGIAVTTGICREEALALNAGFISRMSRGLPWTWLKMATSLDGRSALHNGLSQWITGP 184

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            ++   HL RA+S  +L GIGTVL DDP+LT R +      P R ++D  F++  D+++ 
Sbjct: 185 EARADGHLWRARSCVVLTGIGTVLKDDPQLTVR-SVQTPRQPRRAVVDGRFEIPEDARLF 243

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLV 292
                  VI+ T   D         +N+ ++       D  DL  ++  L  +    + V
Sbjct: 244 DGG---EVIVFTARVDAAKQARLEARNVRVVSMPAAEPDRVDLPAMMRWLAAQQFNEVHV 300

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG--IPSP-LEEGYLEKNFMCVRRDYFGSD 349
           E GA ++ + + +  VD +++Y + +++G+    +  P LE       +  +      +D
Sbjct: 301 EAGAGLSGALVAAGCVDELLIYMAPMLLGDAAGVVRLPLLERLDAAPRYEFIEAQRVAAD 360

Query: 350 VCLE 353
           + + 
Sbjct: 361 LRVR 364


>gi|320102303|ref|YP_004177894.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Isosphaera
           pallida ATCC 43644]
 gi|319749585|gb|ADV61345.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Isosphaera
           pallida ATCC 43644]
          Length = 387

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 130/361 (36%), Positives = 187/361 (51%), Gaps = 21/361 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE--EAR 68
           M  AL  +    G    NP V  LIV+ G V+GRG     G PHAEV+AL    +   AR
Sbjct: 1   MRLALALAERGRGHVEPNPMVGALIVRGGEVVGRGWHRRFGGPHAEVEALRSLSDPALAR 60

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GAT +VTLEPC H G++PPC Q I+E GI RVV  + DP  +V+G GL  L   G+ +  
Sbjct: 61  GATLFVTLEPCCHVGKTPPCTQAILEAGITRVVAAMADPFPKVAGGGLAALRAAGVEVCH 120

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + E+  +    AYL + +  R ++T K A++ D     A   S  I+   S+ +VH LR
Sbjct: 121 GLEETAARRLNAAYLKQVLIGRPYVTAKWAMTLDGKTAAATGDSRWISNERSRARVHELR 180

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DAI+VGIGT LADDP LT R  G    +P RI+LD   +L L S++++T   AP+ +
Sbjct: 181 GRMDAIVVGIGTALADDPLLTVRPPG--PRTPTRIVLDSQARLPLSSRLVRTIDQAPLWL 238

Query: 248 VTENDDPVLAL-AFRKKNINIIYCDCRDLKK----------LLTILVGRGVTSLLVEGGA 296
           V   D P   L A  +  + +      D+++          LL  L   G+T LLVEGG 
Sbjct: 239 VHRPDAPADRLSALERAGVKLFAPQVEDMERHRTSGVPIVPLLDELGREGMTHLLVEGGG 298

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYFGSDVC 351
            VA +F ++  +D++ ++ +  VIG     +PL             F+  R +    D+ 
Sbjct: 299 RVAGAFFDAGAIDALEVFIAPRVIGGTARFAPLLGQGRPLMAQAARFIESRLEILDGDLR 358

Query: 352 L 352
           L
Sbjct: 359 L 359


>gi|307718159|ref|YP_003873691.1| hypothetical protein STHERM_c04460 [Spirochaeta thermophila DSM
           6192]
 gi|306531884|gb|ADN01418.1| hypothetical protein STHERM_c04460 [Spirochaeta thermophila DSM
           6192]
          Length = 362

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 126/362 (34%), Positives = 198/362 (54%), Gaps = 10/362 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++  D  FM  AL  +R   G TS NP V  ++VKDG V+G G     G PHAEV AL E
Sbjct: 1   MAERDVVFMRRALALARRAEGRTSPNPMVGAVVVKDGRVVGEGFHERAGLPHAEVAALSE 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGEEARGA  YVTLEPC H+GR+PPC   I++ G+RRVVV   DP+ +V+G+GL  L++ 
Sbjct: 61  AGEEARGAEMYVTLEPCCHWGRTPPCTDAILKAGVRRVVVACRDPNPQVAGKGLSILAEA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +   ++  E +     +++R    R  +  K+A S D  I +    S  ITG  ++ 
Sbjct: 121 GVEVEVGVLSREARWLNRGFISRMERGRPWVVAKVAASLDGRIALPDGRSKWITGEEARW 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +VH LRA SD ++ GIGTVLADDP  T R+ G +   P  ++LD   +L + +++++   
Sbjct: 181 EVHRLRAGSDVLVTGIGTVLADDPAFTVRVPGGEGRDPGVVVLDTRGRLPVGARVVREG- 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
              V++V    D        ++ + ++    R    D++ +   L   GV   +VE GA 
Sbjct: 240 --TVVMVGPGVDAGWRGEVERRGVRVVEVGIRDGKVDVQAVSRWLGEEGVNVAMVEAGAG 297

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGG--IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           V  +F+ + +VD ++++ +  V+GEG   +   + EG  E+ +        G DV +  +
Sbjct: 298 VTGAFLEAGMVDELVVFVAPRVLGEGRGWVEGRVVEGLGEREWEVREVRRVGEDVMVRCV 357

Query: 356 GK 357
            +
Sbjct: 358 RR 359


>gi|312883784|ref|ZP_07743503.1| riboflavin-specific deaminase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368533|gb|EFP96066.1| riboflavin-specific deaminase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 365

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 120/367 (32%), Positives = 172/367 (46%), Gaps = 28/367 (7%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            +  D   MS AL+ +      T+ NP V C+IVKDG+V+G G     G PHAEV AL+ 
Sbjct: 2   FTIEDHTHMSRALKLAELGKYTTAPNPRVGCVIVKDGLVVGEGFHYRAGEPHAEVHALQA 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A E A GAT YVTLEPCSHYGR+PPCA+ +I+  + RVV  + DP+  VSGRG+Q L   
Sbjct: 62  AKERAIGATVYVTLEPCSHYGRTPPCAEALIKAKVGRVVCAMQDPNTLVSGRGIQMLRSA 121

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI VD  ++E +      A++         + LK+A S D    +    S  IT   ++ 
Sbjct: 122 GIEVDVGLLEQDALDLNRAFIKTMRSGLPFVQLKLAGSLDGQTALKNGQSQWITSSQARQ 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V   RAQS AIL    TV+ D+  LT R + L               P R+ILD    L
Sbjct: 182 DVQAFRAQSGAILSTSKTVIEDNASLTVRWSELPASIQAIYPEKALRQPPRVILDRKQTL 241

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-RGVTS 289
           + D +  ++   + +II   N+        ++           +L  +   L     +  
Sbjct: 242 TSDLRFFQSQSES-IIIAPSNEHFDELDWSKQ----------LELLPIFKTLAKTYSINH 290

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDY 345
           L VE GA ++ S I   LVD +ILY +  ++G  G     + G        +        
Sbjct: 291 LWVEAGATLSRSLIREGLVDELILYIAPKLMGNDGRGLLGDLGLTSLEQAIDLDIKEVRM 350

Query: 346 FGSDVCL 352
            G D+ +
Sbjct: 351 VGKDLRI 357


>gi|114562213|ref|YP_749726.1| riboflavin biosynthesis protein RibD [Shewanella frigidimarina
           NCIMB 400]
 gi|114333506|gb|ABI70888.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Shewanella frigidimarina NCIMB 400]
          Length = 381

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 119/371 (32%), Positives = 178/371 (47%), Gaps = 26/371 (7%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             S+FD + MS A+  +      T  NP V C+IV    +IG G     G  HAEV AL+
Sbjct: 3   NWSTFDTQMMSRAIALAEKGRYTTRPNPCVGCVIVYQNKIIGEGYHQRAGQGHAEVNALK 62

Query: 62  EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                G  A GATAYVTLEPCSHYGR+PPCA  +I   + RVVV V D +  VSGRG+  
Sbjct: 63  MVHDNGLSAEGATAYVTLEPCSHYGRTPPCALGLINAKVARVVVAVTDANPEVSGRGITL 122

Query: 119 LSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L + G+ VD  ++  +       ++ R       IT+KIA S D    ++   S  ITG 
Sbjct: 123 LREAGVEVDVGLLCEQAYDLNLGFMKRMKTGLPWITVKIAASLDGKTALSNGVSKWITGS 182

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPH 227
            ++  V   RA   A++ G+ T+L DDP L  R   L E            P+R++LD  
Sbjct: 183 AARADVQKYRASHCALITGVETILVDDPSLNVRYETLGELTTRHTKDEFFQPLRVVLDSR 242

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTIL 282
            +L+   ++   ++ +P+++V+    P    A   ++++ +   C       L  LLT L
Sbjct: 243 ARLTATQQLF--SIQSPILLVSGCHYPESVKAEFPEHVSFLQLTCDSSGRIPLLALLTYL 300

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----F 338
                 S+L+E GA +A +F+   LVD ++LY++  ++G  G        Y         
Sbjct: 301 GQH-ANSVLIEAGATLAGAFVAQGLVDEVVLYQAPKILGSHGRNMLQLPDYSTMEQTPAL 359

Query: 339 MCVRRDYFGSD 349
             +     G D
Sbjct: 360 QLIDERNVGQD 370


>gi|260575298|ref|ZP_05843298.1| riboflavin biosynthesis protein RibD [Rhodobacter sp. SW2]
 gi|259022558|gb|EEW25854.1| riboflavin biosynthesis protein RibD [Rhodobacter sp. SW2]
          Length = 357

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 133/356 (37%), Positives = 186/356 (52%), Gaps = 12/356 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL  +   +G    NP+V C+IV  G V+GRG T  GG PHAEV AL +AG  ARGA
Sbjct: 1   MAHALALAARGLGRAWPNPAVGCVIVAGGRVVGRGHTQPGGRPHAEVMALHQAGALARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPC+H+G +PPCA+ +I  G+ RVV  + DPD RVSG+G   L   GI + + +
Sbjct: 61  TAYVTLEPCAHHGHTPPCAEALIAAGVARVVTALTDPDPRVSGKGHALLRAAGIAVTEGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           + +E       +L R  +    +TLK+A S D  I      S  ITG +S+   H LR  
Sbjct: 121 LPAEATAANAGFLKRVTQGLPFVTLKLATSLDGRIATETGESRWITGALSRRAGHALRLS 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DA++VG GT LAD+P+LT R  G   H P+RI++D   + S  S++ +T   APV +  
Sbjct: 181 HDAVMVGAGTALADNPDLTARGLGAN-HQPVRIVIDSRLRHSPQSRLGQTTRTAPVWLCH 239

Query: 250 ENDDPV-LALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
               PV    A+      +I+C         L + L  L   G+T +L EGGA +A S I
Sbjct: 240 TEAAPVDARQAWEATGARLIFCPATPEGHVALPEALRNLADLGLTRILCEGGAQLAASLI 299

Query: 304 NSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
             RL D + L+ +  ++G  G+    P  L           +     G D    + 
Sbjct: 300 RDRLADELALFGAGSLLGAEGLAAIGPLALRHLTDAPRLHLLETHPIGEDSLSRWR 355


>gi|301165384|emb|CBW24955.1| riboflavin biosynthesis protein [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           and 5-amino-6-(5-phosphoribosylamino)uracil reductase]
           [Bacteriovorax marinus SJ]
          Length = 378

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 115/375 (30%), Positives = 177/375 (47%), Gaps = 18/375 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D +++      ++   G+TS NP V  +IV+D I+IG G     G PHAE  A+  A E
Sbjct: 5   IDEQYIRRCFALAKKATGMTSPNPLVGSVIVQDNIIIGEGYHQRYGEPHAEPNAINNAVE 64

Query: 66  EARGATAYVTLEPCSHYGR-SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
              GAT Y  LEPC H  + +PPC   IIE  I+RVV+   DP+  V+G G++ L + GI
Sbjct: 65  PVEGATLYCNLEPCCHTNKQTPPCVNKIIESKIKRVVISNLDPNPYVAGNGVKKLREAGI 124

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++E EG+     +      ++  + +K+A + D  I      S  I+  +++ +V
Sbjct: 125 AVSVGVLEEEGRELNEVFFKYITTQKPFVHIKLAQTLDGKIATDSGDSKWISSELARERV 184

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           H  R + DA+L+G  T+  DDP L  R+    +   P RIIL    KLS + K+   +  
Sbjct: 185 HQWRKKYDAVLIGRNTLENDDPTLNIRMGVDAEGKHPFRIILCSVDKLSTEFKVFNDSAS 244

Query: 243 APVIIVTEND-----DPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVE 293
           A  II+T  +            F  K + II      D  DL  LL  L    ++S+LVE
Sbjct: 245 AKTIILTSANSLDKCSEEKIEFFENKGVRIITVEKKEDSFDLNDLLLKLGALKISSILVE 304

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG-----GIPSPLEEGYLEKNFMCVRRDYFGS 348
           GG +V  +FI+    D + L+    +IG G               ++ N   +  ++ G 
Sbjct: 305 GGQSVITAFIDQVEYDKLSLFICPKIIGNGISYYKNDKKQKMSEAIQLNISEIE-NFDGQ 363

Query: 349 DVCLEYIGKNLCLQE 363
            +   Y G   CLQ 
Sbjct: 364 IIYHTYSGGQKCLQG 378


>gi|225874950|ref|YP_002756409.1| riboflavin biosynthesis protein RibD [Acidobacterium capsulatum
           ATCC 51196]
 gi|225792610|gb|ACO32700.1| riboflavin biosynthesis protein RibD [Acidobacterium capsulatum
           ATCC 51196]
          Length = 380

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 118/368 (32%), Positives = 186/368 (50%), Gaps = 12/368 (3%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P  + D R+M  AL  +R    ++S NP+V C++V++G ++G G   Y    HAE+ AL+
Sbjct: 10  PQGNEDQRWMQRALALARLSKAVSSPNPAVGCVLVREGALVGEGYHDYSRKDHAEIVALK 69

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +AG++ARGATAYVTLEPC H GR+ PC + +I  G+RRVV    DP+ +VSG+GL+ L Q
Sbjct: 70  QAGDQARGATAYVTLEPCCHTGRTGPCTEALIAAGVRRVVAATVDPNPKVSGQGLERLRQ 129

Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA-----GCGSVPIT 175
            GI     + ESE +    A+          +TLK  VS D  I              +T
Sbjct: 130 AGIETTAGIGESEARALNDAFACSMRNGHPFVTLKAGVSLDGRIAPRPGSVETGKPYFLT 189

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
           G  +  QV ++R + DA+L GI TVL DDP+L+ R    +    +R++LD   +L LDSK
Sbjct: 190 GPQALAQVQVMRHEHDALLTGINTVLTDDPQLSDRTGLPRRRPLLRVVLDSALRLPLDSK 249

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSL 290
           +++TA    V++           A     + +     +      L ++L  L    + S+
Sbjct: 250 LVRTAQQD-VLVFCSFAPIARRQALESMGVRVEELPGKTRGRISLDEVLGRLHEMQILSV 308

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
           ++E G  V  S +   L+D ++LY + +++G GGI         +           G D+
Sbjct: 309 MLEAGGMVNASALADGLIDKLVLYYAPVLLGTGGISLADGIEMQQLALQRPEWTQTGPDL 368

Query: 351 CLEYIGKN 358
                 ++
Sbjct: 369 RFSAYLRD 376


>gi|170719753|ref|YP_001747441.1| riboflavin biosynthesis protein RibD [Pseudomonas putida W619]
 gi|169757756|gb|ACA71072.1| riboflavin biosynthesis protein RibD [Pseudomonas putida W619]
          Length = 376

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 120/366 (32%), Positives = 187/366 (51%), Gaps = 20/366 (5%)

Query: 1   MPVSS--FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
           MP  +   DA +M+ AL  +R  +  T  NP V C+IV+DG V+G G     G PHAEV 
Sbjct: 1   MPSETAILDAHYMARALELARKGIYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVH 60

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           AL +AGE ARGA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV  + DP+ +V+G+GL+ 
Sbjct: 61  ALRQAGERARGACAYVTLEPCSHHGRTPPCAEALVQAGVARVVAAMQDPNPQVAGQGLRR 120

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L++ GI +   ++E++ +     +L R       +  K+A+S D    MA   S  ITG 
Sbjct: 121 LAEAGIEVASGVLEAQARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGP 180

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPH 227
            +++ V  LRA +  +L    +VLAD+  +T R   L             +P+R+++D  
Sbjct: 181 AARSAVQRLRASASVVLTSAASVLADNARMTVRGAELGLDPDATALALSRTPLRVLIDGR 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC-RDLKKLLTILVGRG 286
            +L LD+   +     P ++VT   D         + +++   +   DL  L+  L  RG
Sbjct: 241 LRLPLDAPFFQ---AGPALVVTAMGDDTRYGQAGHELLSLPGSNGQVDLLALMQALAARG 297

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRR 343
           V  +L+E GA +  +F    L+D   L+ +   +G    P    PL +            
Sbjct: 298 VNDILLEAGAGLVGAFAQLGLIDEYQLFVAGTFLGSQARPLLDWPLSKMSEAPRLKITEM 357

Query: 344 DYFGSD 349
              G D
Sbjct: 358 RAVGDD 363


>gi|218289836|ref|ZP_03494036.1| riboflavin biosynthesis protein RibD [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240127|gb|EED07312.1| riboflavin biosynthesis protein RibD [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 371

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 119/362 (32%), Positives = 190/362 (52%), Gaps = 16/362 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D R+M  AL  +R   G TS NP V  ++V  G+V+G+G     G PHAEV AL  AG
Sbjct: 2   TEDERYMRMALEVARLGEGQTSPNPMVGAIVVNGGLVVGQGAHLMAGTPHAEVHALRMAG 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           + A+GAT YVTLEPC+H+GR+PPC   I+  G+RRVVV   D D R +G G++ L   G+
Sbjct: 62  DAAKGATLYVTLEPCNHHGRTPPCTDAILASGVRRVVVAALDVDPRTAGLGVKRLQDAGL 121

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++E E +     +  R    R ++  K+A++    +  +   S  +TG  ++  V
Sbjct: 122 EVSVGVLEVEARELNRHFFHRVETGRPYVVYKVAMTLSGHVAASSGHSQYVTGLAAREDV 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCR---LNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
           H LR    AI VG+GTVL DDPELT R       ++  P+R++ D   +    ++++ TA
Sbjct: 182 HRLRQIIPAIGVGVGTVLTDDPELTARDLATGTRRDRQPLRVVFDTRLRTPPTARLL-TA 240

Query: 241 LLAPVIIVTEND--DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294
               +++ +E     P  +    + ++ I+    R    DL   L+ +   G  +LLVEG
Sbjct: 241 PGRTLLLTSERMAFSPAASRLAAQGDVRIVPVPERDGHLDLHAALSAIAAEGANALLVEG 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE----GYLEKNFMCVRRDYFGSDV 350
           G  +A + + SRL+D + +Y +  ++  GG+P+                 VR ++ G D+
Sbjct: 301 GPTLASALLQSRLIDEVRVYLAPKLL-AGGLPAFAGAFTQSMSASVELHGVRSEWVGDDL 359

Query: 351 CL 352
            L
Sbjct: 360 VL 361


>gi|329118503|ref|ZP_08247207.1| riboflavin biosynthesis protein RibD [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327465238|gb|EGF11519.1| riboflavin biosynthesis protein RibD [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 374

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 130/366 (35%), Positives = 192/366 (52%), Gaps = 13/366 (3%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             S  D R M  AL  +R     TS NP V C+I + G ++G+G     G PHAEV AL 
Sbjct: 7   NFSDTDRRHMRTALALAREGRFTTSPNPRVGCVIARGGQIVGQGFHLRAGEPHAEVHALR 66

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-QWLS 120
           +AGE ARGATAYVTLEPC+H+GR+PPCAQ +I  G+ RVV  V DP+ +V+G+GL    +
Sbjct: 67  QAGELARGATAYVTLEPCAHHGRTPPCAQALIAAGVSRVVAAVSDPNPQVAGKGLAMLAA 126

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
                   + E+E +   H +L+R    R  + LK A S D    ++   S  IT   ++
Sbjct: 127 AGIAAECGLFEAEARELNHGFLSRIERGRPFLRLKCAASLDGKTALSDGQSQWITDEATR 186

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             VH+LRA+S A+L GIGTVLADDP LT R       +P R++LD   +L   +K++   
Sbjct: 187 ADVHILRAESCAVLTGIGTVLADDPLLTVR-GFPVVRAPARVVLDSRLRLPQTAKLLADP 245

Query: 241 LLAPVIIVTENDDPVLALAF-RKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGG 295
             APV+++T   DP    AF R  ++++      D    L   L +L   G+  +L E G
Sbjct: 246 S-APVLLLTGEADPAKHAAFARFAHVSVHTVPLSDGLISLPAALALLAREGIGEVLAETG 304

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGI-----PSPLEEGYLEKNFMCVRRDYFGSDV 350
           A ++ + + + LVD I+LY++  ++G         P      +   ++     +  GS +
Sbjct: 305 ATLSGALLRADLVDEIVLYQAAKILGAPARGLFATPENPAALHAAPHWQTQSVETLGSGI 364

Query: 351 CLEYIG 356
                 
Sbjct: 365 KWVLRR 370


>gi|269302657|gb|ACZ32757.1| riboflavin biosynthesis protein RibD [Chlamydophila pneumoniae
           LPCoLN]
          Length = 376

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 113/363 (31%), Positives = 173/363 (47%), Gaps = 13/363 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S     FM  A+            NP V C++V++  +IG G  AY G PHAE  A++ 
Sbjct: 4   FSEQQLFFMRRAIEIGEKGRITAPPNPWVGCVVVQENRIIGEGFHAYAGGPHAEELAIQN 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A     G+  YV+LEPCSH+G  PPCA  +I+  + RV V + DPD +V+G+G+  L Q 
Sbjct: 64  ASMPISGSDVYVSLEPCSHFGSRPPCANLLIKYKVSRVFVALVDPDPKVAGQGIAMLRQA 123

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   + ESE +  L  YL ++        LK A S D  +  +   S  IT   +++
Sbjct: 124 GIQVYVGIGESEAQASLQPYLYQRTHNFPWTILKSAASVDGQVADSQGKSQWITCPEARH 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKT 239
            V  LRA+S AILVG  TVL+DDP LT R     L    P+R++LD    +   SK+   
Sbjct: 184 DVGKLRAESQAILVGSRTVLSDDPWLTARQPQGMLYPKQPLRVVLDSRGSVPPTSKVFD- 242

Query: 240 ALLAPVIIVTENDDPV-LALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEG 294
              +P + VT    P          ++ ++  +      DL K+   L  + +  +LVEG
Sbjct: 243 -KTSPTLYVTTERCPKNYIKVLDSLDVPVLLTESTPSGVDLHKVYEYLAQKKILQVLVEG 301

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL---EKNFMCVRRDYFGSDVC 351
           G  +  S +  R V+S++LY   +++G+   P     G L               G+ + 
Sbjct: 302 GTTLHTSLLKERFVNSLVLYSGPMILGDQKRPLVGVLGNLLESASPLTLKSSQILGNSLK 361

Query: 352 LEY 354
           + +
Sbjct: 362 VVW 364


>gi|153005591|ref|YP_001379916.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter sp. Fw109-5]
 gi|152029164|gb|ABS26932.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter sp. Fw109-5]
          Length = 401

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 131/348 (37%), Positives = 182/348 (52%), Gaps = 5/348 (1%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM AA+R +   +G TS NP+V  ++VK G V+ RG  A  G PHAEV AL  AG  ARG
Sbjct: 34  FMRAAVREATKGLGRTSPNPAVGAVLVKGGRVVARGHHARAGGPHAEVVALRAAGARARG 93

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           A  Y TLEPC H+GR+PPC+  ++E G+RRV V   DP+  V+GRG+  L + G+ +V  
Sbjct: 94  ADLYTTLEPCDHFGRTPPCSVAVLEAGVRRVFVGSADPNPLVNGRGVARLREGGVEVVTG 153

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++          + T   E+R H+TLK AV+ D  I      +  +TG  ++  VH LR 
Sbjct: 154 VLRETCDELNAHWFTFITERRPHVTLKAAVTLDGRIATRTGDARWVTGEPARRWVHRLRD 213

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA+LVG GT  ADDP LT RL G +   P+R++LD    L  D  + +    AP ++ 
Sbjct: 214 RVDAVLVGSGTARADDPRLTTRLPGGRGRDPIRVVLDTDLSLPRDLNLFRQRSAAPTLVA 273

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
             +          +           DL+ LL  L  RGVT LLVEGGA V   F+   LV
Sbjct: 274 HASARARDLGPRIELLRCRRGPGGVDLRDLLARLAARGVTHLLVEGGARVHARFLQEGLV 333

Query: 309 DSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCL 352
           D + ++ +  + G  GIP     G        +   VR +  G DV +
Sbjct: 334 DRVAIFVAPKIAGGDGIPLVAGRGPARMADALSLADVRVERVGDDVLV 381


>gi|71282342|ref|YP_267480.1| riboflavin biosynthesis protein RibD [Colwellia psychrerythraea
           34H]
 gi|71148082|gb|AAZ28555.1| riboflavin biosynthesis protein RibD [Colwellia psychrerythraea
           34H]
          Length = 389

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 117/384 (30%), Positives = 187/384 (48%), Gaps = 45/384 (11%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV--KDG--IVIGRGVTAYGGCPHAEVQALEEAGEE 66
           MS A+  ++     TS NP V C++V  K+G   VIG G     G  HAEV AL EA   
Sbjct: 1   MSRAIDLAKKGHFTTSPNPRVGCVLVSYKEGVGKVIGEGYHQKAGQGHAEVNALAEAKVN 60

Query: 67  ----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                +GATAYVTLEPCSH+GR+PPCA+ +++ G+  V+  + DP+ +VSG GL  L + 
Sbjct: 61  NPALIKGATAYVTLEPCSHFGRTPPCAKALVDAGVSHVIAAMVDPNPQVSGNGLSLLEKA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E   ++    ++ + V    ++  K+A S D    MA   S  IT   ++ 
Sbjct: 121 GITVQSGLLEQSARLLNVGFIHKMVNNLPYVRCKLAASLDGKTAMASGESKWITSADARQ 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFKLS 231
            V  LRAQS AI+ G  +VL D+ ++T R + L E            P+RI++D   +L+
Sbjct: 181 DVQRLRAQSCAIITGADSVLFDNAKMTVRWSELGELKSNYPKEALRQPLRIVIDSQNRLT 240

Query: 232 LDSKIIKTALLAPVIIVTEND---------DPVLALAFRKKNINIIYCD---------CR 273
            +  +      +P++I+   D           +  L      +  +              
Sbjct: 241 PNLALF--EHQSPILIINGIDPDYVENKIESHLENLPKWPHFVEQVQLPVTENSQGKLKI 298

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSP 328
           +LK LL  L  RG+  +L+E GA ++ +FI   LV+ +ILY++  ++G  G     +PS 
Sbjct: 299 NLKALLEYLAKRGLNDILIESGARLSGAFIEQNLVNELILYQAPKLMGGDGKNLMEMPS- 357

Query: 329 LEEGYLEKNFMCVRRDYFGSDVCL 352
           + +    K          G D+ +
Sbjct: 358 VSKLNQAKALTISDIRMVGVDIRI 381


>gi|56460970|ref|YP_156251.1| riboflavin-specific deaminase/reductase [Idiomarina loihiensis
           L2TR]
 gi|56179980|gb|AAV82702.1| Riboflavin-specific deaminase/reductase [Idiomarina loihiensis
           L2TR]
          Length = 375

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 127/366 (34%), Positives = 187/366 (51%), Gaps = 18/366 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           FD + M  AL  +R  +  T  NP+V C+I     V+G G     G PHAEV AL  AG+
Sbjct: 9   FDHQMMHRALMLARRGLMTTRPNPAVGCVITLGTEVVGEGWHHQAGEPHAEVHALRAAGQ 68

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           + RGATAYVTLEPCSH GR+PPC   +IE G++RVVV + DP+ RVSG G+Q L   GI 
Sbjct: 69  KVRGATAYVTLEPCSHIGRTPPCCDALIEAGVKRVVVAMQDPNPRVSGNGIQRLKAAGIS 128

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +++   +     +++R   +R  +TLK+A S D    ++   S  IT   S++ V 
Sbjct: 129 VDVGVLQLAAESLNPGFISRMTRQRPWVTLKMATSLDAKTALSDGRSQWITSSDSRSDVQ 188

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE--------HSPMRIILDPHFKLSLDSKI 236
             RAQ+DAIL G  T+LADDP+LT R++   +          P+RII+D   +++ ++++
Sbjct: 189 FFRAQADAILSGAATILADDPKLTVRVDQWPKSRPLPEPLKQPVRIIIDSQHRVNDEARV 248

Query: 237 IKTALLAPVIIV-TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
             +   APV +V T    P       +  I         L  L+  L  R +  L  E G
Sbjct: 249 FDSP--APVWLVRTTPGKPSCHPHCHELIIAADPNGKVSLPALMVELANREINQLWTECG 306

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS-----PLEEGYLEKNFMCVRRDYFGSDV 350
           A +A + I  +L D +++Y S  ++G  G        PL        F  + R   G D 
Sbjct: 307 ANLAGALIQQQLCDRLMIYSSGQLLGHHGRSVIDMNEPLNLAS-APRFKIIDRRQVGPDQ 365

Query: 351 CLEYIG 356
            L  + 
Sbjct: 366 RLVAVP 371


>gi|332295838|ref|YP_004437761.1| riboflavin biosynthesis protein RibD [Thermodesulfobium narugense
           DSM 14796]
 gi|332178941|gb|AEE14630.1| riboflavin biosynthesis protein RibD [Thermodesulfobium narugense
           DSM 14796]
          Length = 372

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 101/358 (28%), Positives = 170/358 (47%), Gaps = 9/358 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             FM  AL  +      TS NP V C++VKD  +I +G     G PHAE  AL+    + 
Sbjct: 14  ESFMKKALDLALNGKYYTSPNPMVGCIVVKDKKIISQGYHRAYGEPHAEANALKPKYIDF 73

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
            GA  YVTLEPC HYG++P C   II  GI+RV +   DP+ +++G+ ++ L   GI + 
Sbjct: 74  SGADLYVTLEPCLHYGKTPSCTSKIISSGIKRVFIATLDPNPKMNGKSVEILKYAGIEVY 133

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++E E +     +     +    +  K A++ D         S  I+   S+  VH L
Sbjct: 134 TGILEKEARFINRHFFKAMEKSMPWLIYKCAMTLDGKTADHNFKSKYISSVKSRKYVHEL 193

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA+ DAI+VG  T + DDP L  RL G+Q+    R+I+DP   L  D  +  T      I
Sbjct: 194 RAECDAIIVGYRTAIFDDPLLNIRLKGVQKKV-NRVIIDPKAALPKDLMVFNTPNEGHTI 252

Query: 247 IVTENDDPVLAL-AFRKKNINIIYCDCRDL-KKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           +V +             + + ++  + ++    L+  L  + +  +L+EGG ++A   + 
Sbjct: 253 LVIQKGFRNKVTDQIESQGVEVLEVEEKNFYVDLMKELFKKNLIKILLEGGGSLACHMLK 312

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
           +RL+D +  + +  ++G    P+P      E +        ++    G+D+ +  + K
Sbjct: 313 NRLIDELNFFIAPKILGGKNSPTPFSGAGFEIDQNTVVLDSLKTKKIGTDILITSLVK 370


>gi|30021491|ref|NP_833122.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
           cereus ATCC 14579]
 gi|29897046|gb|AAP10323.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
           cereus ATCC 14579]
          Length = 302

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 106/294 (36%), Positives = 161/294 (54%), Gaps = 6/294 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M  AL  ++   G T+ NP V  +IV D  ++G G     G PHAE+ A+  AGE+ 
Sbjct: 5   ELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQV 64

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           RGAT YVTLEPCSH+GR+ PCA+ I++ GI++VVV   DP+  VSGRG++ L   GI ++
Sbjct: 65  RGATIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVL 124

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             + E E K     +    + KR  +T+K  V+ D  I  +   S  IT   ++ +VH +
Sbjct: 125 VGVCEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQI 184

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R ++ AILVG  TV  D+P LT R+      +P+RIILD   ++ +++ ++        I
Sbjct: 185 RNENAAILVGANTVQKDNPSLTTRIP--NGRNPIRIILDSTLRIPMEANVVTDGEAPTWI 242

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAA 297
             T N      +A     + +         +L ++L +L  +GV+SLLVEGG  
Sbjct: 243 FTTSNHAAKKKIALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLVEGGGR 296


>gi|154253350|ref|YP_001414174.1| riboflavin biosynthesis protein RibD [Parvibaculum lavamentivorans
           DS-1]
 gi|154157300|gb|ABS64517.1| riboflavin biosynthesis protein RibD [Parvibaculum lavamentivorans
           DS-1]
          Length = 372

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 144/369 (39%), Positives = 204/369 (55%), Gaps = 15/369 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQAL 60
            +DA+FM  AL  +   +G  + NP+V C++V+D      V+GRG T  GG PHAE +AL
Sbjct: 4   PYDAQFMKMALTLAERGLGRVAPNPAVGCVVVRDDGDGPRVVGRGWTQPGGRPHAETEAL 63

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AG  ARGAT YV+LEPCSH+G++ PCA+ +I+ G+ RVV  + DP+  V+GRG   L 
Sbjct: 64  ARAGALARGATVYVSLEPCSHHGKTGPCAEALIKAGVARVVGAIADPNPAVAGRGFAALE 123

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI + + +  ++       +     EKR  +TLKIA S D  I      S  ITG  +
Sbjct: 124 ANGIEVTENVCAADAHHLNEGFFLTMSEKRPLVTLKIASSLDGYIATHEGHSQWITGDRA 183

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           + + HLLRA  DAI+VG  T + DDPELTCRL GL + SP+RII D   +L L SK+++ 
Sbjct: 184 RERGHLLRATHDAIMVGSATAIVDDPELTCRLPGLGDRSPIRIIADGRLRLPLTSKLVRD 243

Query: 240 ALLAPVIIVT-ENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVE 293
           A   PV I+T    D     AF    + +I  +       +++  L  +  RGVT LLVE
Sbjct: 244 ASKTPVWILTLPGGDGQRRKAFEDCGVTLIEVEAGEGGIMNMRAALEQIAARGVTRLLVE 303

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
           GG+ +A S + SRLVD I  +R+  +IG  G P+     +++      F        G D
Sbjct: 304 GGSRLAASLVLSRLVDRIEWFRAPKLIGGDGYPAVSALGVKKLDGAPAFDLRETVALGED 363

Query: 350 VCLEYIGKN 358
               Y+ +N
Sbjct: 364 SLSSYVIRN 372


>gi|269958267|ref|YP_003328054.1| riboflavin biosynthesis protein [Anaplasma centrale str. Israel]
 gi|269848096|gb|ACZ48740.1| riboflavin biosynthesis protein [Anaplasma centrale str. Israel]
          Length = 365

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 136/352 (38%), Positives = 191/352 (54%), Gaps = 7/352 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D RFMS ALR +R  +G T  NP+V C+I    G ++GRG TA GG PHAEV AL  AGE
Sbjct: 4   DERFMSIALRLARRGLGNTYPNPTVGCVITNGAGSIVGRGWTAMGGRPHAEVVALRHAGE 63

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            A G+TAYVTLEPC H G++ PC   +I  G+RRVV+   DPD RVSG+G + LS+ G+ 
Sbjct: 64  AAAGSTAYVTLEPCCHRGQTGPCTAALINAGVRRVVIAALDPDERVSGKGAKSLSEAGVE 123

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +++ + +     +   +   R  +T+K+A + D  I +       IT  +++  VH
Sbjct: 124 VKLGVLQQQAEELNAGFFYSKTRSRPFVTVKLATTLDGKISLPSGDERWITNELTRKWVH 183

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             RA  D I+VG  TV+ADDP L CRL GL+EHSP+RI++D   KL    K++ T+ + P
Sbjct: 184 KQRAMHDGIMVGSNTVVADDPMLDCRLPGLEEHSPIRIVIDRSGKLRAHHKVVATSDVVP 243

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFI 303
             I T+ND+     A R   +         L + ++ L    G+T L VEGG  +    +
Sbjct: 244 TYIATDNDNHETLCAARYLKVG---GKGDFLARTMSALTEELGITRLFVEGGGVLVTELL 300

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
             RLVD  I  R+  V G G   S L       +F  V+   F  D    + 
Sbjct: 301 KRRLVDQFIWCRAAKVCGTGAAESILSLDA-RCHFSRVKTLTFMGDTVEVFR 351


>gi|296123695|ref|YP_003631473.1| riboflavin biosynthesis protein RibD [Planctomyces limnophilus DSM
           3776]
 gi|296016035|gb|ADG69274.1| riboflavin biosynthesis protein RibD [Planctomyces limnophilus DSM
           3776]
          Length = 401

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 127/388 (32%), Positives = 180/388 (46%), Gaps = 32/388 (8%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAYGGCPHAEVQA 59
           M   + DA  M  AL  +R  VG    NP+V  ++V +   ++G G     G PHAEV A
Sbjct: 1   MRFPNPDAV-MEYALMLARRGVGFVEPNPAVGAVVVDEHLQLLGEGWHEKFGGPHAEVHA 59

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           L +AGE+ARGAT Y TLEPCSH+G++PPCA  +I  GIR V   V DP   VSG+G++ L
Sbjct: 60  LAKAGEKARGATIYTTLEPCSHFGKTPPCADALIAAGIRHVETAVIDPAAHVSGQGIEKL 119

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            Q GI +       + +  L  ++  Q   R  +  K A++ D  I      S  I+   
Sbjct: 120 RQAGITVNVGRCADKARELLAPFVAFQCANRPWVHAKWAMTLDGKISTKTGHSHWISSEA 179

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG---LQEHSPMRIILDPHFKLSLDSK 235
           S+  VH LR + DAI+VGIGTVL DDP+L  RL         +P RI+LD    +S  S+
Sbjct: 180 SRRTVHELRGRVDAIVVGIGTVLVDDPQLNVRLPEDWKGPRRTPARIVLDSRLSISPHSQ 239

Query: 236 IIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRD---------- 274
           +++TA   P I+ T           E D              +    C            
Sbjct: 240 LVQTARKIPTIVATIGPEHLQMAEREADWQQRRQVLEAAGCQVWSLPCGSTDIGLAHHPC 299

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG-- 332
           L  LL  +   G+  LLVEGGA +  SF++  L+D +  Y +  ++G     SP+     
Sbjct: 300 LIHLLDKMRAAGMAHLLVEGGARILGSFLDLDLIDEVHAYIAPKLVGGSAAASPIAGKGR 359

Query: 333 ---YLEKNFMCVRRDYFGSDVCLEYIGK 357
              +  + F          D     I +
Sbjct: 360 MTIFDGEEFASGEFTTIDKDAYFHGIRR 387


>gi|240103311|ref|YP_002959620.1| Riboflavin biosynthesis protein ribD (ribD) [Thermococcus
           gammatolerans EJ3]
 gi|239910865|gb|ACS33756.1| Riboflavin biosynthesis protein ribD (ribD) [Thermococcus
           gammatolerans EJ3]
          Length = 408

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 118/356 (33%), Positives = 179/356 (50%), Gaps = 23/356 (6%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
            +S+ D RFM  AL  ++   G  + NP V  +IVKDG VIG G     G  HAEV A+E
Sbjct: 48  TMSNEDERFMRLALELAKRGEGWVNPNPMVGAVIVKDGKVIGVGWHKRFGEKHAEVNAIE 107

Query: 62  EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           +A   G + RGAT YVTLEPCSH+G+ PPCA  II  G +RVVV + DP+  VSGRG++ 
Sbjct: 108 DAKRKGHDVRGATMYVTLEPCSHWGKQPPCADRIIREGFKRVVVAMVDPNPLVSGRGIEK 167

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           + + GI +   ++E E +     ++    +K   +++K+A++ D  I      S  ITG 
Sbjct: 168 MKKAGIEVEVGVLEDEARKLNEIFIKYVTKKMPFVSIKLALTLDGFIATETGSSQWITGE 227

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS---LDS 234
            ++ +V  LR +  AI+VG GTVLAD+P L CRL    E   +++ILD   +++    + 
Sbjct: 228 KARQKVQELRRRHMAIMVGSGTVLADNPRLNCRLENCPEK--IKVILDRSGRVAKAIREG 285

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           +  +      VI  TE   P L     +           +  ++L  L   G+ S+L+EG
Sbjct: 286 RKFRLFEDGRVIFFTEK--PELFEGIAEAY------PITEPGEILRKLGELGIDSVLIEG 337

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFG 347
           G  +   F++    D   L+    + G G  P     +E+            +  G
Sbjct: 338 G-RITCQFLSH--ADKFYLFYGPKLFGNGIKPFECLKVEDANEAPVLRIDSIERLG 390


>gi|194290427|ref|YP_002006334.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (n-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Cupriavidus taiwanensis LMG 19424]
 gi|193224262|emb|CAQ70271.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Cupriavidus taiwanensis LMG 19424]
          Length = 371

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 113/354 (31%), Positives = 181/354 (51%), Gaps = 17/354 (4%)

Query: 20  WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTL 76
             +  T+ NP V C+++KDG VIG+G T   G  HAE+QA+++A   G +  GATAYVTL
Sbjct: 19  RGMFNTTPNPRVGCVLIKDGQVIGQGFTQPAGQDHAEIQAMKDALSRGLDPAGATAYVTL 78

Query: 77  EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGK 135
           EPCSH+GR+PPCA  ++  G+ RVV  ++DP+  VSGRGLQ L   GI +   ++E E +
Sbjct: 79  EPCSHFGRTPPCADALVRAGVARVVAAMEDPNPSVSGRGLQRLRDAGIDVRCGLLEKEAR 138

Query: 136 IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195
                +++R       + +K+A S D    +    S  ITG  +++  H  RA++ AIL 
Sbjct: 139 DLNIGFVSRMTRGLPWVRVKVAASMDGGTALHDGTSQWITGQAARDDGHAWRARACAILT 198

Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK---TALLAPVIIVTEND 252
           GIGTV  D+P LT R        P R+++D   ++ LD++I+         PV++    +
Sbjct: 199 GIGTVRDDNPALTVR-AFATPRQPQRVLVDSRLEVPLDARILTPDSGEFARPVLVFCAVE 257

Query: 253 DPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           D     A   +   ++         +L+++L  L  RG+  L VE G  +  S +     
Sbjct: 258 DRQRQRALEARGAEVVVLPNPHGKVELRRMLEELGRRGINELHVEAGFKLNGSLVREHCA 317

Query: 309 DSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           D +++Y +  ++G+      +P PL      + F        G D+ L     +
Sbjct: 318 DELLIYLAPKLLGDAQGMFNLP-PLARLQDAEQFRWHEVRQIGDDLRLIARRND 370


>gi|160895274|ref|ZP_02076046.1| hypothetical protein CLOL250_02834 [Clostridium sp. L2-50]
 gi|156863153|gb|EDO56584.1| hypothetical protein CLOL250_02834 [Clostridium sp. L2-50]
          Length = 336

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 111/333 (33%), Positives = 163/333 (48%), Gaps = 14/333 (4%)

Query: 34  LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFII 93
           +IVKDG +IG G     G  HAE  A     E+A GA  YVTLEPC HYG+ PPC   II
Sbjct: 1   MIVKDGRIIGEGYHRRYGELHAERDAFAHLTEDAAGAEMYVTLEPCCHYGKQPPCVNAII 60

Query: 94  ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHI 152
           E  I RV V  DDP+  VSG+G Q L   GI ++  +++ E       +    V K  ++
Sbjct: 61  EHKISRVYVGSDDPNALVSGKGYQILRDAGIEVITHVLKEECDSLNPVFFHYIVNKTPYV 120

Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN 212
            +K A++ D  I      S  ITG  ++  V   R     I+VG  TV+ DDP LTCR  
Sbjct: 121 VMKYAMTMDGKIATYSGKSKWITGEEARAHVMEQRNALTGIMVGSETVIKDDPALTCRRA 180

Query: 213 GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT--ENDDPVLALAFRKKNINIIYC 270
           G    +P+RII D   ++ +DS+I++TA   P I+ T    D            + II  
Sbjct: 181 G--GRNPVRIICDSRLRIPMDSQIVRTASEVPTILATIQSEDQTDKKQKLIGAGVEIIET 238

Query: 271 DC----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           +      DL++L+  L  R +  +L+EGG  +  S + + +V  + +Y +  + G     
Sbjct: 239 ENVDGHVDLQELMRQLGARNIDGILLEGGGTLNESALKAGIVKEVDVYIAPKIFGGSAGY 298

Query: 327 SPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354
           +P+    +E       F       FG+D+ L+Y
Sbjct: 299 TPVGGMGVESPEEAYPFELGSVQRFGADIMLQY 331


>gi|123966659|ref|YP_001011740.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. MIT 9515]
 gi|123201025|gb|ABM72633.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. MIT 9515]
          Length = 368

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 100/355 (28%), Positives = 167/355 (47%), Gaps = 9/355 (2%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAG 64
            D ++M  A+  +    G T+ NP V  +I+ K+G +I  G  +  G PHAE  A     
Sbjct: 7   IDIKWMKRAIYLASLGKGRTNPNPMVGAVILDKNGNLISEGFHSKSGMPHAEAMAFNNLK 66

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           + AR    YV LEPC H+G++PPC   II  GI++V V ++DPD RVSG+G++ L   GI
Sbjct: 67  KNARDGILYVNLEPCCHHGKTPPCVDKIISFGIKKVFVSIEDPDKRVSGKGIKLLKDSGI 126

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V   + E E      +++ R +   ++  LK A+S D  +G+    S  IT   S++ V
Sbjct: 127 EVHLGLCEKESTELNKSFIHRNITNNAYGVLKWAMSMDGRVGLKNGKSKWITNKDSRSLV 186

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  RA  DAI++G  T+  DDP LT R  G +   P+R++      L   S      L  
Sbjct: 187 HSHRACFDAIVIGGNTLRKDDPLLTSR--GRRNPEPLRVVFTKTLDLPEKSNFWDFNLAK 244

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            +++   +      L    + + I      +   L  +L  +G  ++L E G  +A S I
Sbjct: 245 TLVVYDSSCADKNFLKRIPEGVEIEELSSDNPILLSNLLAKKGCNNVLWECGPKLATSAI 304

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
            +  +  ++ + +  ++G     +P  +          N      ++ G D+ ++
Sbjct: 305 KAGCIQELMTFIAPKILGGISSMNPFSDFEFTDMDQVFNLCKSEINFIGDDIFVK 359


>gi|284045160|ref|YP_003395500.1| riboflavin biosynthesis protein RibD [Conexibacter woesei DSM
           14684]
 gi|283949381|gb|ADB52125.1| riboflavin biosynthesis protein RibD [Conexibacter woesei DSM
           14684]
          Length = 374

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 118/365 (32%), Positives = 183/365 (50%), Gaps = 15/365 (4%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P +  D   ++ AL  +    G  S NP V  +I +DG V+  G  +  G PHAEV+A+ 
Sbjct: 4   PTTDTDRLHLARALELAAQGRGRVSPNPMVGAVITRDGEVVAEGWHSEYGAPHAEVEAIA 63

Query: 62  EAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            AG+ +  GAT YV+LEPC H G+ PPC   I+  GIRRVVV  DDP  + SGRGL  L 
Sbjct: 64  AAGDADLSGATLYVSLEPCCHTGKQPPCTDAILAAGIRRVVVASDDPTEKASGRGLGILR 123

Query: 121 QKGI---IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
            +G+   +    + +  ++    +  +    R  +  K A++ D  +      S  I+  
Sbjct: 124 DEGVDVAVAGGELAARARLLNQPFRKQARTGRPWVLFKSAMTLDGKVATRAGDSKWISST 183

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            S+ + H  RA+ DA+ VGIGT LADDP+LT R+ G+    P R++ D   ++ LDS+++
Sbjct: 184 QSRERAHHWRAECDAVAVGIGTALADDPQLTARIPGV-ARQPRRVVFDSLARVPLDSQLV 242

Query: 238 KTALLAPVIIVTENDDPVLAL-AFRKKNINIIYCDCRDLKK----LLTILVGRGVTSLLV 292
           + A   P+ +V     P  A  A       +I     +        L  L   GV S+L+
Sbjct: 243 QAAADIPLTVVVSRAAPRTATDALETHGAEVIVATGANEPARVVSALDQLGAVGVASILL 302

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR-----DYFG 347
           EGG  +A +F+++  +D + L+ + IV+G      PLE   +E     +R      D  G
Sbjct: 303 EGGPRLAGAFLDAGEIDELRLFLAPIVLGGRTARDPLEGEGVETISEALRALTLDCDRVG 362

Query: 348 SDVCL 352
            D+ +
Sbjct: 363 EDLLV 367


>gi|57640359|ref|YP_182837.1| riboflavin biosynthesis protein RibD [Thermococcus kodakarensis
           KOD1]
 gi|57158683|dbj|BAD84613.1| riboflavin biosynthesis protein RibD [Thermococcus kodakarensis
           KOD1]
          Length = 353

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 115/331 (34%), Positives = 175/331 (52%), Gaps = 20/331 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   D +FM  AL  ++   G T+ NP V  +IVKDG +IG G     G  HAE+ A+E+
Sbjct: 1   MRDEDEKFMRLALELAKRGEGWTNPNPMVGAVIVKDGKIIGVGWHRKFGEKHAEINAIED 60

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + RGAT YVTLEPCSH+G+ PPCA  II+ G +RVVV ++DP+  V+G+G++ +
Sbjct: 61  AKAKGYDVRGATMYVTLEPCSHWGKQPPCADRIIQEGFKRVVVAMEDPNPLVAGQGIEKM 120

Query: 120 SQKGIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            + GI V+  +  E        +L     K   +++K+A++ D  I      S  ITG  
Sbjct: 121 RKAGIEVEVGLLEEEARKLNEIFLKYITTKLPFVSIKLALTLDGFIATETGSSKWITGEK 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD---SK 235
           ++ +V  LR +  AI+VG GTVLAD+P L CRL    E   +++ILD   +++ +    +
Sbjct: 181 ARQRVQELRRKHMAIMVGSGTVLADNPRLNCRLENCPEK--VKVILDRSGRVADEMRKGR 238

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
             +      VI  TE  +    +A              +  K+L  L   G+ S+LVEGG
Sbjct: 239 KFRLFEDGRVIFFTEKPEKFKGIAEAY--------PITEPAKILKKLGELGIDSVLVEGG 290

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
             +A  F++  L D + L+    + G G  P
Sbjct: 291 -RIACQFLS--LADKLYLFYGPKLFGRGIKP 318


>gi|300312948|ref|YP_003777040.1| bifunctional diaminohydroxyphosphoribosyl aminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Herbaspirillum seropedicae SmR1]
 gi|300075733|gb|ADJ65132.1| bifunctional enzyme: diaminohydroxyphosphoribosyl aminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase protein [Herbaspirillum seropedicae SmR1]
          Length = 354

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 117/354 (33%), Positives = 181/354 (51%), Gaps = 17/354 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
           M+ AL  + + +  T+ NP V C+IVKD  +IG G T   G  HAE+QA+ +A   G + 
Sbjct: 1   MALALIQAGFGMLDTTPNPRVGCVIVKDQRIIGAGFTQPPGGNHAEIQAMADAAARGHDV 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           RGAT YVTLEPCSH+GR+PPCA  +I  G+ RVV  + DP+  V+G+GL  L   GI + 
Sbjct: 61  RGATVYVTLEPCSHFGRTPPCADALIRAGVARVVAAIADPNPMVAGQGLARLQAAGIEVS 120

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++E E +     +L R    R  + +K A S D    +    S  ITG  +++  H+ 
Sbjct: 121 CGLLEEEARDINIGFLHRMRTGRPWVRMKSAASLDGKTALHNGVSQWITGQAARDDGHIW 180

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA++ AI+ GIGT+  DD +LT R        P RI++D    +S ++++I+        
Sbjct: 181 RARACAIMAGIGTIQKDDAQLTVRAIE-TPRQPRRIVIDSKLIVSPEARVIQGGN---TW 236

Query: 247 IVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           + T  DD     A   +   +I         DL  L+  L  R +  L VE GA +  + 
Sbjct: 237 VFTATDDRDKRAALEAEGAEVILLANEQGKVDLPGLMRELGQRQINELHVEAGARLNGAL 296

Query: 303 INSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           +    VD +++Y +  +IG+G     +P PLE+   +           G+D+ +
Sbjct: 297 LREGCVDELLVYLAPSLIGDGRNMFELP-PLEDLSGKIGIRFHEVKQVGADLRI 349


>gi|88809077|ref|ZP_01124586.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 7805]
 gi|88787019|gb|EAR18177.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 7805]
          Length = 372

 Score =  319 bits (817), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 121/362 (33%), Positives = 181/362 (50%), Gaps = 14/362 (3%)

Query: 3   VSSFDARF---MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQ 58
           V+  D R+   M  AL  +    G TS NP V  +++   G ++G G  A  G PHAEV 
Sbjct: 4   VADADQRWIPWMRRALELAALADGYTSPNPLVGAVVLDPSGTLVGEGFHARAGEPHAEVG 63

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           AL +AG+ ARG T  VTLEPC H+GR+PPC   +I+ GI RVVV + DPD RV+G GLQ 
Sbjct: 64  ALAQAGDAARGGTIIVTLEPCCHHGRTPPCTDALIKAGIARVVVALTDPDPRVAGGGLQR 123

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L   G+ ++  ++E+E     +A++ R    R    LK A+S D    +    S  I+G 
Sbjct: 124 LRDAGVEVISGVLEAEAAQQNYAFVHRVRTGRPWGLLKWAMSLDGRTALPNGASQWISGS 183

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            ++  VH LRAQ DA++VG GTV ADDP LT R  GL+   P+R++L     L   ++I 
Sbjct: 184 TARTWVHRLRAQCDAVIVGGGTVRADDPLLTSR--GLRSPEPLRVVLSRRLDLPDQAQIW 241

Query: 238 KTALLAPVIIVTENDDPVLAL-AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
             + +AP ++V   D P  A        +          + L+ +L  RG   +L E G 
Sbjct: 242 DQS-VAPTLVVHGQDAPAEARDRLEALGLQREVLPACGPESLMAVLAQRGCNRVLWECGP 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVC 351
            +A + +    V  +    +  ++G     +PL     +          +R+     D+ 
Sbjct: 301 ELAAAALQQACVQELAAVIAPKLLGGEPARTPLGHLGFQAMEEVVVLQGLRQQRLTDDLL 360

Query: 352 LE 353
           L+
Sbjct: 361 LQ 362


>gi|257066652|ref|YP_003152908.1| riboflavin biosynthesis protein RibD [Anaerococcus prevotii DSM
           20548]
 gi|256798532|gb|ACV29187.1| riboflavin biosynthesis protein RibD [Anaerococcus prevotii DSM
           20548]
          Length = 357

 Score =  319 bits (817), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 117/353 (33%), Positives = 169/353 (47%), Gaps = 20/353 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M      +R   G   TNP V  +++K+G +I +G      C HAE+       E A GA
Sbjct: 7   MRECFDLARKGAGKVLTNPMVGAILIKNGEIIAKGYHKSNTCDHAEIDCFNNLKESAEGA 66

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T  V LEPCSH+G+ PPC   +I+  ++RVV+   D + +V   GL  L + GI ++  +
Sbjct: 67  TLIVNLEPCSHFGKHPPCVDEVIKRKVKRVVIANLDTNPKV--DGLSKLKEAGIEVITGV 124

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E EG+     +       R  + LK A S D  I  A   S  IT   S+  VH LR++
Sbjct: 125 LEDEGRKLNEKFFFNMENNRPLVALKYAQSLDGKIATASFDSKWITNEESRAYVHKLRSE 184

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DAILVG  T+  D+P LT R+ G    +P RIIL     +  D ++ +        I T
Sbjct: 185 YDAILVGANTLRQDNPRLTSRIEG--GVNPYRIILSDKLDIDKDREVFRENADKKTYIAT 242

Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
            +D  +        N  II C  +    DLK LL  L  R + S+LVEGG+ + +SF+  
Sbjct: 243 ISDKDI------DINAEIIRCKEKDGRVDLKDLLDKLYERNIGSVLVEGGSIINNSFLEE 296

Query: 306 RLVDSIILYRSQIVI-GEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVCLE 353
            LVD I  + + I++ G     + + EG       K F       FG+DV  E
Sbjct: 297 DLVDKIYQFMAPIIVSGLDSRSAFIGEGAKVIKDAKRFSIDDIKRFGTDVMFE 349


>gi|329903444|ref|ZP_08273466.1| Diamino hydroxy phospho ribosyl amin opyrimidine deaminase
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327548371|gb|EGF33053.1| Diamino hydroxy phospho ribosyl amin opyrimidine deaminase
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 363

 Score =  319 bits (817), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 116/360 (32%), Positives = 180/360 (50%), Gaps = 17/360 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
           + D + M+ AL ++   + +T+ NP V C++V+DG+V+G G T   G  HAE+QAL +A 
Sbjct: 4   ANDQQGMALALEWAAKGMFITAPNPRVGCVVVRDGVVLGAGHTQAAGQAHAEIQALADAQ 63

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
             G    GAT YVTLEPCSH+GR+PPCA  II  G+ RVV  + DP+  V+G GL+ L  
Sbjct: 64  ARGNSVTGATLYVTLEPCSHHGRTPPCADAIIRAGVVRVVSAIADPNPLVAGAGLERLRA 123

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +   ++          + +R    +  + +K A S D    +    S  IT   ++
Sbjct: 124 AGIAVTTEVLRDAALEMNIGFFSRMQSGKPWVRMKAAASLDGKTALHNGASQWITAAPAR 183

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
           +  H+ RA++ A+L GIGTV ADDP+LT R        P RI++D   ++ L ++I++  
Sbjct: 184 DDGHVWRARACAVLTGIGTVKADDPQLTVR-AVATPRQPRRIVIDSRLEIDLQARILQD- 241

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGA 296
             APV +V    D     A       +I         DL  L+  L  R +  L VE G 
Sbjct: 242 --APVWVVCAQADADKQAALESLGHEVICLPNAAGKVDLPGLMRELGRRQINELHVEAGF 299

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +  S +    VD ++LY +  +IG+      +P+ L     +   +       G D+ +
Sbjct: 300 KLNGSLLREGCVDELLLYLAPSLIGDAQGLFDLPA-LTSLSGKTGLVFHDVKQIGPDLRI 358


>gi|163759204|ref|ZP_02166290.1| riboflavin-specific deaminase / reductase [Hoeflea phototrophica
           DFL-43]
 gi|162283608|gb|EDQ33893.1| riboflavin-specific deaminase / reductase [Hoeflea phototrophica
           DFL-43]
          Length = 379

 Score =  319 bits (817), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 168/364 (46%), Positives = 225/364 (61%), Gaps = 10/364 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI----VIGRGVTAYGGCPHAEVQ 58
           V + D RFM+AA+R +RWH G T +NPSVA LIV++      ++GRGVTA GG PHAE Q
Sbjct: 15  VDALDRRFMAAAIRLARWHQGRTGSNPSVATLIVREINDEPVIVGRGVTAVGGRPHAEPQ 74

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           AL EAG+ ARGATAYVTLEPC+H+GR+PPCA+ ++  G+ RVV    DPD RVSGRG Q 
Sbjct: 75  ALAEAGDLARGATAYVTLEPCAHHGRTPPCAEALVSAGVSRVVAAASDPDDRVSGRGYQI 134

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L    I + + ++  E    L  YLTR+++ R H+TLK+A+S++  IG    G V ITG 
Sbjct: 135 LRDARIEVEENVLAEEAARDLAGYLTRRMKNRVHVTLKLALSRNGKIGRRDGGQVLITGE 194

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
           +S  QVH LRAQ+D IL+GIGT L DDP LTCR+ GL++ SP+R++LD   KL + SK++
Sbjct: 195 VSNRQVHALRAQADVILIGIGTALNDDPSLTCRIEGLEDRSPIRLVLDTQLKLPVASKLV 254

Query: 238 KTALLAPVIIVTEND-DPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLV 292
           +TA   P+ I T    D            + I C+  D    L +LL  L  RG++S+LV
Sbjct: 255 RTAREVPLWIATSAAQDHPARAGLAAAGADFIACETHDGQIALPELLEDLAARGLSSVLV 314

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           EGG  VA +F+   LVD +IL   QI I    + +P   G +   F       FG+D   
Sbjct: 315 EGGEQVAEAFLAEGLVDRLILLTGQIDIEGDAVDAPFAPGIVPPGFRKTSSMTFGADHMD 374

Query: 353 EYIG 356
           E+  
Sbjct: 375 EFER 378


>gi|91792502|ref|YP_562153.1| riboflavin biosynthesis protein RibD [Shewanella denitrificans
           OS217]
 gi|91714504|gb|ABE54430.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Shewanella denitrificans OS217]
          Length = 378

 Score =  319 bits (817), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 183/377 (48%), Gaps = 25/377 (6%)

Query: 1   MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ- 58
           MP  S FD   MS A++ +      T  NP V C+IVKDGI +  G     G  HAEV  
Sbjct: 1   MPSWSKFDIEMMSRAIQLAERGRYTTRPNPCVGCVIVKDGIKLAEGYHQKAGFGHAEVNA 60

Query: 59  --ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
             AL+ A   A GATAYVTLEPCSH+GR+PPCAQ ++E G+ +VVV + D + +V+G+G+
Sbjct: 61  LAALKSANLSAIGATAYVTLEPCSHFGRTPPCAQTLVESGVAKVVVAITDANPQVAGKGI 120

Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
             L + GI +   +++++       ++ R       +T+K+A S D    ++   S  IT
Sbjct: 121 AMLREAGIAVEVGLLQAQALELNLGFMKRMRTGLPWVTVKLAASLDGKTALSNGVSKWIT 180

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILD 225
           G  S+N V  LRA+S A++ GI TVLADDP L  R   L          + H P+RI+LD
Sbjct: 181 GDASRNDVQKLRARSCALITGIETVLADDPSLNVRYQSLGSLKDELDVTELHQPVRIVLD 240

Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTIL 282
              +L+ D ++   ++ +P+I+V+    P   +            D      L  L   L
Sbjct: 241 SKARLTADKRLF--SITSPIILVSTQAYPETVIFPAHVQCLQFAPDNDGRVPLISLFHHL 298

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----F 338
             +    +L+E GA +A   +   L D + LY++  ++G  G        Y   +     
Sbjct: 299 G-KSYNQVLIEAGATLAGKVLELGLGDELYLYQAMKILGSHGRNLVQLPDYQAMDDIPSL 357

Query: 339 MCVRRDYFGSDVCLEYI 355
                   G D    + 
Sbjct: 358 QLKDSRQLGEDRRYIFR 374


>gi|254486598|ref|ZP_05099803.1| riboflavin biosynthesis protein RibD [Roseobacter sp. GAI101]
 gi|214043467|gb|EEB84105.1| riboflavin biosynthesis protein RibD [Roseobacter sp. GAI101]
          Length = 356

 Score =  319 bits (817), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 129/354 (36%), Positives = 188/354 (53%), Gaps = 11/354 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL   R   G    NP+V C+IV+   ++GRG T  GG PHAE +AL +AG +A GA
Sbjct: 1   MALALSLGRRGQGTVWPNPAVGCVIVQGDRIVGRGWTQPGGRPHAEPEALAQAGAQAVGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPC+H G++PPCAQ +I+  + RVV+   D D RVSG+G+  L   GI +   +
Sbjct: 61  TVYVTLEPCAHTGKTPPCAQALIDAQVARVVIACADSDPRVSGKGIAMLQAAGIAVDTGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E E +     +L+R    R  +TLK+A S D  I  A   S  IT   ++  VH +RA+
Sbjct: 121 LEDEARKDHIGFLSRIDIARPMVTLKLASSFDGRIATATGESQWITAGPARRLVHAMRAR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DA++VG GT   DDP LT R  G+    P RI++     L L  K+ +TA L PVI+  
Sbjct: 181 HDAVMVGGGTARQDDPSLTVRDIGIT-RQPARIVVSSRLDLPLSGKLAQTAALIPVILCH 239

Query: 250 -ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
             + DP L   +++    +I C  R    D   +L  L   G+T +  EGG  +A S + 
Sbjct: 240 ATSADPHLVTTWQQLGATLIPCATRAGQLDPADILRKLADHGLTRIFCEGGGGLAASLLQ 299

Query: 305 SRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           + LVD ++ + + + IG  G+P+     L +      F        G D+   +
Sbjct: 300 ADLVDHLVGFTAGLAIGADGLPAIGPLGLSQLGKAPRFSLEYTRAIGPDILHSW 353


>gi|330445267|ref|ZP_08308919.1| riboflavin biosynthesis protein RibD [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489458|dbj|GAA03416.1| riboflavin biosynthesis protein RibD [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 374

 Score =  319 bits (817), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 111/334 (33%), Positives = 179/334 (53%), Gaps = 14/334 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            +  D R M  A++ ++     T+ NP+V C+I +   ++G G     G PHAEV AL++
Sbjct: 2   FTHLDTRLMLRAIQLAKRGRFTTAPNPNVGCVIARGEEIVGEGFHYRAGEPHAEVFALKQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  A+GATAYVTLEPCSHYGR+PPCA+ +I+ GI +V+  + DP+  V+GRG++ L + 
Sbjct: 62  AGTLAKGATAYVTLEPCSHYGRTPPCAEALIKSGISKVICAMVDPNPMVAGRGVEMLQKA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E E +     ++    +K   + LK+A S D    +A   S  ITG  ++ 
Sbjct: 122 GIDVQVGLLEEEAQALNLGFIKSMTKKMPFVELKLASSLDGKTALANGESKWITGPCARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V   RA++ AIL    TV+ADDP L  R + L E             P+R+I+D   +L
Sbjct: 182 DVQRHRARAGAILSTSATVIADDPSLNVRWSELGEQVQAQYAQEDVRQPIRVIIDSQNRL 241

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY-CDCRDLKKLLTILVGRGVTS 289
           +   ++        ++  TE  D     +  +  +         DL +L+  L   G+  
Sbjct: 242 TPAYQLFHLPGK-TILARTEEGDEDWPESVSQWVVPTRQNSQQIDLTELMRQLAEAGINH 300

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           + VE GA +A   ++++LVDS+ILY++  ++G  
Sbjct: 301 IWVEAGAGLAGGLLDAQLVDSLILYQAPKLMGAD 334


>gi|258510931|ref|YP_003184365.1| riboflavin biosynthesis protein RibD [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477657|gb|ACV57976.1| riboflavin biosynthesis protein RibD [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 371

 Score =  318 bits (816), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 120/363 (33%), Positives = 187/363 (51%), Gaps = 18/363 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D R+M  AL  +R   G TS NP V  ++V  G V+G+G     G PHAEV AL  AG
Sbjct: 2   TEDERYMRMALEVARLGEGQTSPNPMVGAIVVNGGRVVGQGAHLMAGTPHAEVHALRMAG 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           + A+GAT YVTLEPC+H+GR+PPC   I+  G+RRVVV   D D R +G G++ L + GI
Sbjct: 62  DAAQGATLYVTLEPCNHHGRTPPCTDAILATGVRRVVVAALDVDPRTAGLGVKRLQEAGI 121

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++E+E +     +  R    R ++  K+A++    +  +   S  +TG  ++  V
Sbjct: 122 EVTVGVLEAEARELNRHFFHRVTTGRPYVVYKVAMTLSGHVAASSGHSQYVTGLAAREDV 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCR---LNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
           H LR    AI VG+GTVL DDPELT R       ++  P+R++ D   +    ++++  A
Sbjct: 182 HWLRQIIPAIGVGVGTVLTDDPELTARDLAAGTRRDRQPLRVVFDTRLRTPPTARLL--A 239

Query: 241 LLAPVIIVTEN---DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVE 293
                +++T       P       + ++ I     R    DL   L+ +   G  +LLVE
Sbjct: 240 APGRTLLLTSERMASAPAARRLAEQGDVRIAPVAERDGHLDLHAALSAIAAEGANALLVE 299

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE----EGYLEKNFMCVRRDYFGSD 349
           GG  +A + + SRL+D I +Y +  ++  GG+P+                 VR D+ G D
Sbjct: 300 GGPTLASALLKSRLIDEIRVYLAPKLL-AGGLPAFAGAFTQGMAEAVELHGVRSDWVGDD 358

Query: 350 VCL 352
           + +
Sbjct: 359 LVV 361


>gi|94677040|ref|YP_589028.1| riboflavin biosynthesis protein RibD [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
 gi|94220190|gb|ABF14349.1| riboflavin biosynthesis protein RibD [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 378

 Score =  318 bits (816), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 182/365 (49%), Gaps = 20/365 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +++ A + +R     T+ NP+V C+I++D  V+G G     G PHAE+ AL  AG  
Sbjct: 4   DEFYLALAFKLARRGKLTTAPNPNVGCVIIRDHRVVGEGYHVRAGEPHAEIHALRMAGAM 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GATAY+TLEPC+HYG +PPC + +I  GI RVV  + DP+ +V+GRGL  L Q  I +
Sbjct: 64  AYGATAYITLEPCNHYGHTPPCTEALIAAGISRVVAAMLDPNPKVNGRGLYRLQQANIEV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M  + ++    +L R       I +K+A S D    MA   S  IT   ++  V  
Sbjct: 124 RHSIMLQDAEMINKGFLKRMRTGLPWIRVKLATSLDGRTAMASGESSWITSNQARQDVQR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
            RA+SDAIL    TVLAD+P L  R   L               P+++I+D   +++   
Sbjct: 184 FRAESDAILSTSATVLADNPTLNVRWLSLPADIQCLCKEENIRQPIKVIIDSANRVNPFH 243

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD---CRDLKKLLTILVGRGVTSLL 291
           +IIK+      +   + DD +      +  + ++        DL  L+ +L  R + S+ 
Sbjct: 244 RIIKSNG-TTWLARIQPDDKIWPRWVEQIQLPVLSRQDILRIDLMALMILLGKRHINSVW 302

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFG 347
           VE GA +A S + + LVD +ILY S  ++G+   P      LE      N   +     G
Sbjct: 303 VEAGANLAGSLLLAGLVDELILYMSPKLLGDKARPLCLLPGLERLSDALNCKLLNIRQVG 362

Query: 348 SDVCL 352
            D+ +
Sbjct: 363 PDIRI 367


>gi|113868804|ref|YP_727293.1| pyrimidine deaminase/reductase [Ralstonia eutropha H16]
 gi|113527580|emb|CAJ93925.1| pyrimidine deaminase/reductase [Ralstonia eutropha H16]
          Length = 371

 Score =  318 bits (815), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 112/354 (31%), Positives = 182/354 (51%), Gaps = 17/354 (4%)

Query: 20  WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTL 76
             + +T+ NP V C++VKDG VIG+G T   G  HAE+QA+++A   G +  G+TAYVTL
Sbjct: 19  RGMFITTPNPRVGCVLVKDGQVIGQGFTQPAGQDHAEIQAMKDALARGLDPAGSTAYVTL 78

Query: 77  EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGK 135
           EPCSH+GR+PPCA  ++  G+ RVV  ++DP+  VSGRGLQ L + G+ +   ++E E +
Sbjct: 79  EPCSHFGRTPPCADALVRAGVARVVAAMEDPNPSVSGRGLQRLREAGVDVRCGLLEKEAR 138

Query: 136 IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195
                +++R       + +K+A S D    +    S  ITG  +++  H  RA++ AIL 
Sbjct: 139 DLNIGFVSRMTRGLPWVRIKVAASMDGGTALHDGTSQWITGQAARDDGHAWRARACAILT 198

Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL---LAPVIIVTEND 252
           GIGTV  D+P LT R        P R+++D   ++ LD++I+         PV++    +
Sbjct: 199 GIGTVRDDNPALTVR-AIATPRQPQRVLVDSRLEVPLDAQILTPDTGQFAKPVLVFCAVE 257

Query: 253 DPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           D     A   +   ++         +L+++L  L  RG+  L VE G  +  S +     
Sbjct: 258 DRERQRALEGRGAEVVVLSNPHGKVELRRMLEELGRRGINELHVEAGFKLNGSLVREHCA 317

Query: 309 DSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           D +++Y +  ++G+      +P PL        F        G D+ L     +
Sbjct: 318 DELLIYLAPKLLGDAQGMFNLP-PLARLQDAAQFRWHEIRQIGDDLRLIARRND 370


>gi|84687686|ref|ZP_01015559.1| riboflavin biosynthesis protein RibD [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84664269|gb|EAQ10760.1| riboflavin biosynthesis protein RibD [Rhodobacterales bacterium
           HTCC2654]
          Length = 367

 Score =  318 bits (815), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 140/359 (38%), Positives = 188/359 (52%), Gaps = 11/359 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM  AL   R  +G    NP+V C+IV    ++GRG T  GG PHAEV AL +AGE 
Sbjct: 3   DERFMDLALSLGRRGLGSVWPNPAVGCVIVNGARIVGRGWTQPGGRPHAEVVALAQAGEA 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGATAYVTLEPCSH+G++PPCA  +I  GI RVVV + DPD RV+GRG+  L   GI +
Sbjct: 63  ARGATAYVTLEPCSHHGQTPPCAVALISAGIARVVVALGDPDNRVNGRGIAMLRAAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  + E+E +     +L+R    R  +TLK+A S D  I  A   S  ITG  ++ QVH 
Sbjct: 123 VTGLGEAEARADQVGFLSRVERGRPMVTLKLAASLDGRIATATGESQWITGPEARRQVHA 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R   DA++VG GT  ADDP LT R  G +   P+R++L  H  + LDS + +TA   PV
Sbjct: 183 ERMIHDAVMVGAGTARADDPSLTVRGLGAR-RQPVRVVLSRHLDIPLDSVLARTAKEVPV 241

Query: 246 IIVTENDDPV-LALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300
            ++  +  P  +  A+       I         D+   L  L   G+T +  EGG  +A 
Sbjct: 242 WLIHGDRAPDGVVAAWEGLGARCIAVPVVLGRIDVAAALAALGAAGLTRVFCEGGGGLAA 301

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           S +   LVD  + + + I +G  G PS     +           V     G DV   + 
Sbjct: 302 SLLAEGLVDEYVGFTAGIALGAEGWPSIAAMGVGALADAPRLELVELRAIGGDVLHRWR 360


>gi|291295639|ref|YP_003507037.1| riboflavin biosynthesis protein RibD [Meiothermus ruber DSM 1279]
 gi|290470598|gb|ADD28017.1| riboflavin biosynthesis protein RibD [Meiothermus ruber DSM 1279]
          Length = 384

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 103/374 (27%), Positives = 178/374 (47%), Gaps = 23/374 (6%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D R++  AL+ +    G T  NP V  ++VK+G ++G G     G PHAEV AL +AG
Sbjct: 9   ALDERYLRRALQLAERGRGHTHPNPLVGAVLVKNGRIVGEGYHPRAGEPHAEVFALHQAG 68

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           EEA+GAT YV+LEPC H+GR+PPC+  ++E G+ RVVV   DP+ + +  GL+ L   G+
Sbjct: 69  EEAQGATLYVSLEPCDHHGRTPPCSLALLEAGVGRVVVAARDPNPK-AQGGLERLRSAGV 127

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++E+E +     +      +R  +  K A+S D  +      +  ++  +S+   
Sbjct: 128 AVELGLLEAEARAQNEVFFHALRRRRPFVLWKAALSLDGQVATRSGHAAWVSNALSRRVA 187

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFKLSLD 233
              R    A++VG+GTVLADDP+LT R    +             P++++LD   +    
Sbjct: 188 QGYRQWLPAVMVGVGTVLADDPQLTVREPDFRAFPHLLEPPPLRDPLKVVLDTEARTPPG 247

Query: 234 SKII----KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGR 285
           +++     +       ++V             +    ++          L+  L  L  +
Sbjct: 248 ARLFAPGPRGEPARVAVLVGAGAPAARIRVLERHGATVVELPREGGRVSLEAALAWLWEQ 307

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEK--NFMCVR 342
           GV  +L+EGG  +A + +    VD + L+ +  ++GEG G       G +++       R
Sbjct: 308 GVDGVLLEGGPTLAGALLRKGWVDKVALFLAPKLVGEGRGALLGFAAGRMDEALGLETRR 367

Query: 343 RDYFGSDVCLEYIG 356
            +    D+ LE   
Sbjct: 368 LELLEGDIWLEAYP 381


>gi|330815405|ref|YP_004359110.1| Putative deaminase [Burkholderia gladioli BSR3]
 gi|327367798|gb|AEA59154.1| Putative deaminase [Burkholderia gladioli BSR3]
          Length = 384

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 124/364 (34%), Positives = 191/364 (52%), Gaps = 21/364 (5%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
           + D  +M+ AL  +   +  T+ NP V C+IVK GI+IG G T   G  HAEV+A+++A 
Sbjct: 18  ALDRAWMARALELAARGLYTTTPNPRVGCVIVKHGILIGEGYTQPAGHDHAEVRAMKDAR 77

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
             G E RGATAYVTLEPCSHYGR+PPCA+ ++E GI  VV  ++DP+ +VSGRG   L +
Sbjct: 78  ARGHELRGATAYVTLEPCSHYGRTPPCAKGLVEAGIATVVAAMEDPNPQVSGRGYAMLRE 137

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +   ++E E +     +++R    R  + +K+A S D    + G  S  ITG  ++
Sbjct: 138 AGIEVRGGVLEEEARELNIGFVSRMTRARPWVRMKMAASLDGRSALPGGASQWITGAAAR 197

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              H  RA++ +IL GIGTV  DDP+L  R        P R+++D    L  +++++  A
Sbjct: 198 ADGHAWRARACSILTGIGTVRGDDPQLNVR-GIDTPRQPRRVLIDGRLDLPHEARLM--A 254

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYC------DCRDLKKLLTILVGRGVTSLLVEG 294
              P++   E D P  A A   +                DL  +L  L  RG   L VE 
Sbjct: 255 GAPPLVFCGELDAPARARADALRARGAEVVSLANARGSVDLAAVLAELGCRGDNELHVEA 314

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP-----SPLE-EGYLEKNFMCVRRDYFGS 348
           G  ++ + + + LVD +++Y +  ++G          +P+  E  ++  F  V R   G 
Sbjct: 315 GRTLSGALLRAGLVDELLVYVAPSLLGADAAAMFELSAPVSLESRVKLRFHDVER--VGE 372

Query: 349 DVCL 352
           D+ +
Sbjct: 373 DLRI 376


>gi|154491828|ref|ZP_02031454.1| hypothetical protein PARMER_01449 [Parabacteroides merdae ATCC
           43184]
 gi|154088069|gb|EDN87114.1| hypothetical protein PARMER_01449 [Parabacteroides merdae ATCC
           43184]
          Length = 395

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 120/334 (35%), Positives = 180/334 (53%), Gaps = 16/334 (4%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            ++M+  +  +R   G T+ NP V  +IV  G +IG G     G  HAEV A+    +EA
Sbjct: 53  EKYMARCIELARGGEGNTAPNPMVGAVIVHKGKIIGEGFHRKCGEAHAEVNAVASVRDEA 112

Query: 68  --RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
             R +T YV+LEPCSHYG++PPCA+ II  GI RVVV   DP   VSGRG++ L + GI 
Sbjct: 113 LLRDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGTLDPFPEVSGRGVRMLREAGIE 172

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG----SVPITGFISK 180
           +V  ++E E +    A++T Q+ KR ++ LK A S D  I +        SV ++   + 
Sbjct: 173 VVTGVLEEEARALNPAFMTFQIRKRPYVYLKWAQSADGFIDIRREDASVPSVLLSSAETL 232

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            +VH LR++  AI+VG  T L D+P LT R       SP+R++LD   KL + S ++  A
Sbjct: 233 RRVHRLRSEVAAIMVGTRTALLDNPSLTVR--HWAGRSPVRVVLDRTLKLPVGSHLLDGA 290

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
              P ++ T     V   +        I      L ++L  L G+ + SL+VEGGA +  
Sbjct: 291 --VPTLVFT----AVEVESRPNVEYVQIDFGQEVLSQVLQYLYGQNLNSLMVEGGAELLE 344

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
           SF+++ L D   +  + +V+G  G+ +P   G L
Sbjct: 345 SFLDAGLWDEAWVETAPVVLGA-GVKAPAVPGVL 377


>gi|262405149|ref|ZP_06081699.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 2_1_22]
 gi|262356024|gb|EEZ05114.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 2_1_22]
          Length = 351

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 122/357 (34%), Positives = 181/357 (50%), Gaps = 23/357 (6%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
            ++M   +  ++  +   S NP V  +IV DG +IG G     G  HAEV A+    +E 
Sbjct: 10  EKYMRRCIELAKNGLCNVSPNPMVGAVIVCDGRIIGEGYHIRCGEAHAEVNAIHSVKDES 69

Query: 67  -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
             + +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP   V+GRG+Q L   G  
Sbjct: 70  LLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGRE 129

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQ 182
           +   ++E E K  +  ++T     R  ITLK A S D+ I +      PI  +  ++   
Sbjct: 130 VSVGVLEEECKSLIRRFITFNTLHRPFITLKWAESADHFIDIERTDGKPIVLSSPLTSML 189

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  RA++DAI+VG  T L D+P LT R      H+P+R++LD    L  DS+I      
Sbjct: 190 VHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDSQIFDGN-- 245

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
            P +I TE   P       KKNI  I  +     LK+++  L  R + SLLVEGG  +  
Sbjct: 246 VPTLIFTEKQQP------EKKNITYITINFSHNPLKQIMEALYQRKIQSLLVEGGRQLLQ 299

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           SFI++ L D   + +    +   GI +P     ++ NF     ++F   +   Y+ +
Sbjct: 300 SFIDNELWDEAYIEKCPSRL-HSGIKAP----QMDDNFSYSIEEHFERQIW-HYVRR 350


>gi|319790138|ref|YP_004151771.1| riboflavin biosynthesis protein RibD [Thermovibrio ammonificans
           HB-1]
 gi|317114640|gb|ADU97130.1| riboflavin biosynthesis protein RibD [Thermovibrio ammonificans
           HB-1]
          Length = 371

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 129/365 (35%), Positives = 189/365 (51%), Gaps = 15/365 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  AL  +    G T  NP+V  ++V++G V+  G     G PHAE  ALE AG++
Sbjct: 3   DCYFMELALAEAYKGKGKTLPNPAVGAVVVREGRVVATGYHEAPGRPHAEAVALERAGDK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GAT YVTLEPC+HYGR+PPC + II  G++RVVV + DP+  V+  G++ L   GI V
Sbjct: 63  AKGATLYVTLEPCNHYGRTPPCTEKIIASGVKRVVVGLRDPNP-VASGGIERLRGAGIEV 121

Query: 127 DRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +  E    L   +LT     RS + LK+A + D         S  ITG  ++  VH 
Sbjct: 122 TVGVLKERCFELVEDFLTLVTCGRSFLHLKLASTLDGATADRDGRSKWITGGEARRLVHR 181

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR+  +A++VGIGTVLADDP LT R   + E  P+ +++DP  KL ++ +++K    A +
Sbjct: 182 LRSYHNAVMVGIGTVLADDPLLTVREFPV-EKQPIAVVVDPSLKLPVNCRLVK-ERAAEL 239

Query: 246 IIVTENDD--PVLALAFRKKNINIIYC----DCRDLKKLLTILVGR-GVTSLLVEGGAAV 298
           ++VT  +      A   +   + ++         DL++ L  L     V SLL EGGA +
Sbjct: 240 VVVTAQESLLSYKASLLQDLGVRLLPVFGGEGRLDLEEALNGLKEEFSVYSLLCEGGARL 299

Query: 299 AHSFINSRLVDSIILYRSQIVIGE-GGIPSPLEEGYL---EKNFMCVRRDYFGSDVCLEY 354
           A S +   LVD + L+ +   +G    +P    E        NF        GSD  L+ 
Sbjct: 300 AGSLLVQGLVDRLSLFYAPKALGGRDFVPIFGCESRSLEEAFNFWLFECGKVGSDALLKL 359

Query: 355 IGKNL 359
             + L
Sbjct: 360 YSREL 364


>gi|293371696|ref|ZP_06618107.1| riboflavin biosynthesis protein RibD [Bacteroides ovatus SD CMC 3f]
 gi|292633393|gb|EFF51963.1| riboflavin biosynthesis protein RibD [Bacteroides ovatus SD CMC 3f]
          Length = 351

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 120/357 (33%), Positives = 181/357 (50%), Gaps = 23/357 (6%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
            ++M   +  ++  +   S NP V  +IV DG +IG G     G  HAEV A+    +E 
Sbjct: 10  EKYMKRCIELAKNGLCNVSPNPMVGAVIVCDGRIIGEGYHIRCGEAHAEVNAIRSVKDES 69

Query: 67  -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
             + +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP   V+GRG+Q L   G  
Sbjct: 70  LLKHSTIYVSLEPCSHYGKTPPCANLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGRE 129

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQ 182
           +   ++E E K  +  ++T     R  ITLK A S D+ I +      P+  +  ++   
Sbjct: 130 VTVGVLEEECKSLIRRFITFNTLHRPFITLKWAESADHFIDIERTDGKPVSLSSPLTSML 189

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  RA++DAI+VG  T L D+P LT R      H+P+R++LD    L  DS+I      
Sbjct: 190 VHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDSQIFDGN-- 245

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
            P +I TE   P       KKNI  I    +   LK+++  L  R + SLLVEGG  +  
Sbjct: 246 VPTLIFTEKQQP------EKKNITYITINFNHNPLKQIMEALYQRKIQSLLVEGGRQLLQ 299

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           SFI++ L D   + +       G + S ++   ++ NF     ++F   +   Y+ +
Sbjct: 300 SFIDNELWDEAYIEKCP-----GRLHSGVKAPQMDDNFSYSIEEHFERQIW-HYVRR 350


>gi|315186245|gb|EFU20006.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           ;5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Spirochaeta thermophila DSM 6578]
          Length = 362

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 124/362 (34%), Positives = 196/362 (54%), Gaps = 10/362 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++  D  FM  AL  +R   G TS NP V  ++VKDG V+G G     G PHAEV AL E
Sbjct: 1   MAERDVVFMRRALALARRAEGRTSPNPMVGAVVVKDGRVVGEGFHERAGLPHAEVTALSE 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG EARGA  YVTLEPC H+GR+PPC   I++ G+RRVVV   DP+ +V+G+GL  L++ 
Sbjct: 61  AGGEARGAEMYVTLEPCCHWGRTPPCTDAILKAGVRRVVVACRDPNPQVAGKGLSILAEA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +   ++  E +     +++R    R  +  K+A S D  I +    S  ITG  S+ 
Sbjct: 121 GVEVEVGVLSREARWLNRGFISRMERGRPWVVAKVAASLDGRIALPDGRSKWITGEASRR 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +VH LRA SD ++ GIGTVLADDP  T R+   +   P  ++LD   +L + +++++   
Sbjct: 181 EVHRLRAGSDVLVTGIGTVLADDPAFTVRVPVGEGRDPGVVVLDTRGRLPVGARVVREG- 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
              V++V    D        ++ + ++    R    D++ +   L   GV  ++VE GA 
Sbjct: 240 --TVVMVGPGVDEGWRGEMERRGVRVVEMGVRGERVDVEAVCAWLGQEGVNVVMVEAGAG 297

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGG--IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           V  +F+ + +VD ++++ +  V+GEG   +   + EG  E+ +        G D  +  +
Sbjct: 298 VTGAFLEAGVVDELVVFVAPRVLGEGRGWVEGRVLEGLGEREWEVREVRGVGEDAVVRCV 357

Query: 356 GK 357
            +
Sbjct: 358 RR 359


>gi|237715308|ref|ZP_04545789.1| riboflavin biosynthesis protein ribD [Bacteroides sp. D1]
 gi|294643551|ref|ZP_06721357.1| riboflavin biosynthesis protein RibD [Bacteroides ovatus SD CC 2a]
 gi|294807058|ref|ZP_06765877.1| riboflavin biosynthesis protein RibD [Bacteroides xylanisolvens SD
           CC 1b]
 gi|229444617|gb|EEO50408.1| riboflavin biosynthesis protein ribD [Bacteroides sp. D1]
 gi|292641126|gb|EFF59338.1| riboflavin biosynthesis protein RibD [Bacteroides ovatus SD CC 2a]
 gi|294445757|gb|EFG14405.1| riboflavin biosynthesis protein RibD [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 345

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 122/357 (34%), Positives = 181/357 (50%), Gaps = 23/357 (6%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
            ++M   +  ++  +   S NP V  +IV DG +IG G     G  HAEV A+    +E 
Sbjct: 4   EKYMRRCIELAKNGLCNVSPNPMVGAVIVCDGRIIGEGYHIRCGEAHAEVNAIHSVKDES 63

Query: 67  -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
             + +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP   V+GRG+Q L   G  
Sbjct: 64  LLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGRE 123

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQ 182
           +   ++E E K  +  ++T     R  ITLK A S D+ I +      PI  +  ++   
Sbjct: 124 VSVGVLEEECKSLIRRFITFNTLHRPFITLKWAESADHFIDIERTDGKPIVLSSPLTSML 183

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  RA++DAI+VG  T L D+P LT R      H+P+R++LD    L  DS+I      
Sbjct: 184 VHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDSQIFDGN-- 239

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
            P +I TE   P       KKNI  I  +     LK+++  L  R + SLLVEGG  +  
Sbjct: 240 VPTLIFTEKQQP------EKKNITYITINFSHNPLKQIMEALYQRKIQSLLVEGGRQLLQ 293

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           SFI++ L D   + +    +   GI +P     ++ NF     ++F   +   Y+ +
Sbjct: 294 SFIDNELWDEAYIEKCPSRL-HSGIKAP----QMDDNFSYSIEEHFERQIW-HYVRR 344


>gi|85058629|ref|YP_454331.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Sodalis glossinidius str. 'morsitans']
 gi|84779149|dbj|BAE73926.1| riboflavin biosynthesis protein RibD [Sodalis glossinidius str.
           'morsitans']
          Length = 375

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 125/366 (34%), Positives = 177/366 (48%), Gaps = 18/366 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D  +++ A   +R     T+ NP+V C+IV+DG ++G G     G  HAEV AL +AG
Sbjct: 2   DHDEVYLARAFELARRGRFTTAPNPNVGCVIVRDGRIVGEGYHQRAGYAHAEVHALRQAG 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
             AR ATAYVTLEPCSH+GR+PPCA  +I+ G+ RVV  + DP+ +V+GRG   L Q GI
Sbjct: 62  NAARCATAYVTLEPCSHHGRTPPCADALIDAGVARVVAAMPDPNPQVAGRGFYRLQQAGI 121

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   +M  E +     +L R       + LK+A S D    MA   S  IT   ++  V
Sbjct: 122 EVRHGLMLPEAEAVNPGFLKRMRTGFPWVRLKLAASLDGRTAMASGESQWITSTEARRDV 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSL 232
              RA+SDAIL    TVLADDP LT R   L E             P+R+I+D    ++ 
Sbjct: 182 QRWRAESDAILSTATTVLADDPALTVRWASLPEDVQALYPEERLRQPVRVIIDRANSVTP 241

Query: 233 DSKIIKTALLAPVIIVTEND--DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
              + +   L  +  +  +D   P                   DL  L+  L  R + SL
Sbjct: 242 SHWVAQGVGLTWLARLAPDDLTWPSSVEQLLLPAGEGANAAHLDLVALMMQLGRRQINSL 301

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYF 346
            VE GA +A + + + LVD +ILY++  ++G    P      LE       F  +     
Sbjct: 302 WVEAGAGLAGALLGAGLVDELILYQAPKLLGADARPLCLLPGLERLGAAPGFTLLDVRQV 361

Query: 347 GSDVCL 352
           G D+ L
Sbjct: 362 GPDLRL 367


>gi|294678596|ref|YP_003579211.1| riboflavin biosynthesis protein RibD [Rhodobacter capsulatus SB
           1003]
 gi|294477416|gb|ADE86804.1| riboflavin biosynthesis protein RibD [Rhodobacter capsulatus SB
           1003]
          Length = 367

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 131/368 (35%), Positives = 191/368 (51%), Gaps = 16/368 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S  D RFM  AL  +   +G    NP+V C+IV  G ++GRG T  GG PHAE +AL++
Sbjct: 1   MSEADGRFMRLALGLAGRGLGNVWPNPAVGCVIVNGGRIVGRGWTQPGGRPHAERRALDQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  ARGATAYVTLEPC+H+G++PPCA+ +I  G+ RVV  ++DPD RVSGRG   L   
Sbjct: 61  AGPAARGATAYVTLEPCAHHGKTPPCAEALIAAGVVRVVSALEDPDPRVSGRGHAMLRAA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++ +E +     +L+R    R  + LK+  S D  I +A   S  ITG  ++ 
Sbjct: 121 GIAVETGVLAAEARAAQAGFLSRIERGRPWLALKLGASFDGRIALANGESQWITGPQARA 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           QV  LRA+ DA+LVG GT  ADDP LT R +     +P+R++      L    ++  +  
Sbjct: 181 QVQALRARFDAVLVGGGTARADDPLLTLR-HFKPLRAPVRVVASRRLDLPRG-RLAGSLG 238

Query: 242 LAPVIIVTENDDPVLALA-FRKKNINIIYCDCR--------DLKKLLTILVGRGVTSLLV 292
            AP+ ++   + P  A A +      +I    R        D   LL  L  RG+T +  
Sbjct: 239 QAPLWLLHGAEAPGEARAFWAGLGAELIEVAGRDTGRDTGLDPVALLAALGARGLTRVFC 298

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGS 348
           EGG   A S + + LVD +I + + +V+G    P   + G         +        G 
Sbjct: 299 EGGGQFAASLMAAGLVDELIGFTAGVVLGGDARPGIGDLGLTRLAEAPRYRLDSLQPIGP 358

Query: 349 DVCLEYIG 356
           DV   ++ 
Sbjct: 359 DVLARWLR 366


>gi|260642492|ref|ZP_05859416.1| riboflavin biosynthesis protein RibD [Bacteroides finegoldii DSM
           17565]
 gi|260621884|gb|EEX44755.1| riboflavin biosynthesis protein RibD [Bacteroides finegoldii DSM
           17565]
          Length = 373

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 114/352 (32%), Positives = 180/352 (51%), Gaps = 22/352 (6%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
            ++M   +  ++  +   + NP V  +IV DG +IG G     G  HAEV A+    +E 
Sbjct: 32  EKYMRRCIELAKNGLCNVAPNPMVGAVIVCDGRIIGEGYHVRCGEAHAEVNAIRSVKDES 91

Query: 67  -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
             + +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP  +V+GRG+Q L   G  
Sbjct: 92  LLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCRDPFSKVAGRGIQKLQNAGRE 151

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA--GCGSVPITGFISKNQ 182
           ++  ++E E    +  ++T    +R  ITLK A S D  I +       V ++  ++   
Sbjct: 152 VIVGVLEEECLHLIRRFITFNTLRRPFITLKWAESADQFIDIERIDGNPVLLSSPLTSML 211

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  RA++ AI+VG  T L D+P LT R       +P+RI+LD +  L  D +I      
Sbjct: 212 VHKKRAENTAIMVGRRTALLDNPSLTVR--NWYGRNPIRIVLDRNLSLPNDLQIFNGE-- 267

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
            P ++ TE + P       +K+++ I  D     LK ++  L  R + SLLVEGG+ +  
Sbjct: 268 VPTLVFTEKEHP------EEKSVSYITIDFGHNPLKLIMEELYQRNIQSLLVEGGSQLLQ 321

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           SFI++ L D   + +    +   G+ SP     +  NF    +++FG  +  
Sbjct: 322 SFIDNELWDEAYIEKCPKRL-YSGVKSP----EISNNFSYSTKEHFGRQIWY 368


>gi|116073254|ref|ZP_01470516.1| Riboflavin biosynthesis protein RibD [Synechococcus sp. RS9916]
 gi|116068559|gb|EAU74311.1| Riboflavin biosynthesis protein RibD [Synechococcus sp. RS9916]
          Length = 386

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 118/380 (31%), Positives = 184/380 (48%), Gaps = 21/380 (5%)

Query: 3   VSSFDARF---MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQ 58
           +S+ + R+   M  AL+ +    G TS NP V  +++   G ++G G  A  G PHAEV 
Sbjct: 1   MSAAEQRWIPWMRRALQLAALADGHTSPNPLVGAVVLDAAGQLVGEGFHARAGEPHAEVG 60

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           AL +AG+ ARG T  VTLEPC H+GR+PPCA  +I  GI+RVVV + DPD RV+G GLQ 
Sbjct: 61  ALAQAGDAARGGTIVVTLEPCCHHGRTPPCADAVIAAGIQRVVVALTDPDPRVAGGGLQR 120

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L   G+ ++  ++E+E      A++ R    R    LK A+  D    ++   S  I+G 
Sbjct: 121 LRDAGLEVISGVLEAEAAYQNRAFVHRVQTGRPWGVLKWAMGLDGRTALSNGASQWISGP 180

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            ++  VH LRA  DA++VG GTV ADDP LT R  G     P+R++L     L   +++ 
Sbjct: 181 PARAWVHQLRAGCDAVIVGGGTVRADDPLLTSR--GRCASEPLRVVLSRSLDLPQSAQLW 238

Query: 238 KTALLAPV---------IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
              +   +             E    V   A +   + +   D  + + L   L  RG  
Sbjct: 239 DQTVAPTLVAHGPVAVAAAADEAPASVRLAALQGHGVAVQQLDRCEPEALFPELASRGCN 298

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RR 343
            +L E G ++A + ++   V  + +  +  V+G     +PL +         V       
Sbjct: 299 RVLWECGPSLAAAALHQGCVQELAVVIAPKVMGGELARTPLGDLGFTAMDQVVPVSLAAA 358

Query: 344 DYFGSDVCLEYIGKNLCLQE 363
              G D+ L+ +   + +Q+
Sbjct: 359 QNLGRDLLLQGVVGAMPIQD 378


>gi|238024083|ref|YP_002908315.1| putative deaminase [Burkholderia glumae BGR1]
 gi|55509025|gb|AAV52810.1| putative deaminase [Burkholderia glumae BGR1]
 gi|148562469|gb|ABQ88346.1| putative deaminase [Burkholderia glumae]
 gi|237878748|gb|ACR31080.1| Putative deaminase [Burkholderia glumae BGR1]
          Length = 384

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 117/362 (32%), Positives = 183/362 (50%), Gaps = 17/362 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
           + D  +M+ AL  +   +  T+ NP V C+IVK G++IG G T   G  HAEV+A+++A 
Sbjct: 18  ALDRAWMAKALELAARGLYTTTPNPRVGCVIVKHGMLIGEGYTQPAGHDHAEVRAMKDAR 77

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
             G E RGATAYVTLEPCSHYGR+PPCA+ ++E GI  VV  ++DP+ +VSGRG   L +
Sbjct: 78  SRGHELRGATAYVTLEPCSHYGRTPPCAKGLVEAGIATVVAAMEDPNPQVSGRGYAMLRE 137

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +   ++E E +     +++R    R  + +K+A S D    +    S  ITG  ++
Sbjct: 138 AGIEVRGGVLEDEARELNIGFVSRMTRARPWVRMKMAASLDGRSALPDGASQWITGSAAR 197

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              H  RA++ +IL GIGTV  DDP+L  R        P R+++D    L  +++++  A
Sbjct: 198 ADGHAWRARACSILTGIGTVRRDDPQLNVR-GIDTPRQPRRVLIDARLDLPHEARLM--A 254

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYC------DCRDLKKLLTILVGRGVTSLLVEG 294
              P++   E D    A A   +                DL  +L  L GRG   L VE 
Sbjct: 255 GPPPLVFCGELDASARARADALRARGAEVVSLASARGSVDLAAVLAELGGRGDNELHVEA 314

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDV 350
           G  ++ + + + LVD +++Y +  ++G            +             +  G D+
Sbjct: 315 GRTLSGALLRAGLVDELLVYVAPSLLGADAAAMFELSAPISLESRVKLRFHEVERVGEDL 374

Query: 351 CL 352
            +
Sbjct: 375 RI 376


>gi|88704437|ref|ZP_01102151.1| Riboflavin biosynthesis protein ribD [Congregibacter litoralis
           KT71]
 gi|88701488|gb|EAQ98593.1| Riboflavin biosynthesis protein ribD [Congregibacter litoralis
           KT71]
          Length = 377

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 112/364 (30%), Positives = 183/364 (50%), Gaps = 12/364 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D +FM+ ALR +         NP V C++V+D  V+G G T   G  HAE+ AL+ AG+ 
Sbjct: 14  DRQFMARALRLAERGKYWARPNPHVGCVLVRDSTVVGEGFTQPAGGDHAEIMALKAAGDA 73

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARG+TAYVTLEPC+H GR+PPC   +I  G+ RV V + DP+ +V G G+  L  +G+ +
Sbjct: 74  ARGSTAYVTLEPCAHTGRTPPCCNALIAAGVARVFVGLRDPNPKVDGGGIHRLQAEGLAV 133

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M  + +  L  +L RQ   R  + +K+A+S D    MA   S  ITG  ++  V  
Sbjct: 134 HQGLMADQVEAQLAGFLQRQRLGRPRLRIKLAMSLDGRTAMASGESQWITGPQARLDVQK 193

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNG-------LQEHSPMRIILDPHFKLSLDSKIIK 238
           LRA+S AIL G+GTVL DD  LT R +          +   +R++ D H +    + +++
Sbjct: 194 LRAESCAILTGVGTVLEDDCALTVRDSAFDDELLPAPQRRALRVVADRHLRTPAHAAVLQ 253

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
               + ++  +  D   L        +           +++  L  R    +L+E G  +
Sbjct: 254 GEQPSLILHGSGADASHLPETLEHLALPG-EAGGVAPAEIMAALAARECNEILLESGPTL 312

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           A + + S + D++I+Y + +++G    P    PL+E         V R   G D    ++
Sbjct: 313 AGAMLRSGMADALIVYIAPVLLGSRARPLLELPLDEMAEALRLQLVDRRQIGDDHRFVFV 372

Query: 356 GKNL 359
            +++
Sbjct: 373 PQSV 376


>gi|34496745|ref|NP_900960.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Chromobacterium violaceum ATCC 12472]
 gi|34102600|gb|AAQ58965.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Chromobacterium violaceum ATCC 12472]
          Length = 368

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 125/367 (34%), Positives = 186/367 (50%), Gaps = 18/367 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D  +M  ALR +       + NP V C++V  G V+G G T   G  HAEVQA+++ 
Sbjct: 5   SADDYLYMQRALRLAEGATRRAAPNPGVGCVLVNHGRVVGEGATLALGSDHAEVQAIKDC 64

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              GE  RGATAYVTLEPCSH+GR+PPCA+ +++ G+ RVV  + DP   VSGRG+  L 
Sbjct: 65  LARGESPRGATAYVTLEPCSHHGRTPPCAERLVKEGVARVVAAMVDPYHEVSGRGIAMLR 124

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             G+     +ME++ +     +L+R    R  +TLK A + D    +    S  ITG  +
Sbjct: 125 AAGVEASAGLMEAQARRAHRGFLSRVERGRPWVTLKAAATLDGKTALLNGRSKWITGPEA 184

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  V  LRA   AIL G GTVLADDP+LT R   +    P R++LD   +    +++ + 
Sbjct: 185 RMDVQRLRAAHCAILTGSGTVLADDPQLTVRELQVAS-QPWRVVLDGDLRTDPAARVYQG 243

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGG 295
                  + +   D     AFR + + ++         DL  LL  L GRGV  L+VE G
Sbjct: 244 GGA---WLASCAADAGRLAAFRGRGVEVLTLARLGGKADLADLLAQLAGRGVNELMVEAG 300

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGI-----PSPLEEGYLEKNFMCVRRDYFGSDV 350
           A +  + + + LVD I+LY +  + G+        P+ L++   +           G D+
Sbjct: 301 AGLNGAMLRAGLVDEIVLYLAPSLAGDAARGLFAWPA-LDDLADKVELDVADVGMVGRDL 359

Query: 351 CLEYIGK 357
            L    +
Sbjct: 360 RLTLRPR 366


>gi|237719659|ref|ZP_04550140.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 2_2_4]
 gi|229450928|gb|EEO56719.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 2_2_4]
          Length = 345

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 119/357 (33%), Positives = 180/357 (50%), Gaps = 23/357 (6%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
            ++M   +  ++  +   S NP V  +IV DG +IG G     G  HAEV A+    +E 
Sbjct: 4   EKYMRRCIELAKNGLCNVSPNPMVGAVIVCDGRIIGEGYHIRCGEAHAEVNAIRSVKDES 63

Query: 67  -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
             + +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP   V+GRG+Q L   G  
Sbjct: 64  LLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGRE 123

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQ 182
           +   ++E E K  +  ++T     R  ITLK A S D+ I +      P+  +  ++   
Sbjct: 124 VTVGVLEEECKSLIRRFITFNTLHRPFITLKWAESADHFIDIERTDGKPVVLSSPLTSML 183

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  RA++DAI+VG  T L D+P LT R      H+P+R++LD    L  D +I      
Sbjct: 184 VHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDLQIFDGN-- 239

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
            P  I TE + P       KKNI  I    +   LK+++  L  R + SLLVEGG  +  
Sbjct: 240 VPTFIFTEKEQP------EKKNITYITINFNHNPLKQIMEALYQRKIQSLLVEGGRQLLQ 293

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           SFI++ L D   + +    +   G+ +P     ++ NF     ++F   +   Y+ +
Sbjct: 294 SFIDNELWDEAYIEKCPSRL-HSGVKAP----QMDDNFSYSIEEHFERQIW-HYVRR 344


>gi|332976011|gb|EGK12882.1| riboflavin biosynthesis protein RibD [Psychrobacter sp. 1501(2011)]
          Length = 374

 Score =  316 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 115/360 (31%), Positives = 180/360 (50%), Gaps = 36/360 (10%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A+  ++  +  T  NP+V C++VKDG++IG G     G PHAEV AL  A + 
Sbjct: 36  DYYYMNLAIEAAKKGLYTTRPNPAVGCVLVKDGLIIGTGFHPKAGQPHAEVFALRNATQS 95

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
              ATAYVTLEPCSH G++PPCA+ +I+  + RVV+   DP+ +V+GRG++ L   GI +
Sbjct: 96  VAAATAYVTLEPCSHTGKTPPCAEALIKAQVSRVVIAGLDPNPKVAGRGVRLLLDAGIKV 155

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +   + +     +L     +  ++ LKIA S D    MA   S  ITG  ++  V  
Sbjct: 156 SVGVCTEQAEQLNLGFLKSMRTQMPYVRLKIASSLDGRTAMASGESKWITGSAAREDVQQ 215

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL-----QEHSPMRIILDPHFKLS-LDSKIIKT 239
           LRA S AI+ G  T++ D+P L  R   L     Q   P  ++LD   +L   D K+++ 
Sbjct: 216 LRALSGAIITGSQTIIKDNPSLNVRSTQLGVDIEQIPQPKVVVLDRRQRLKGSDYKVLQN 275

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGVTSLLVEGGAAV 298
                 ++  +N                      DLK LL  L V   +  +L+E G+ V
Sbjct: 276 EQ---TLLWADN----------------------DLKTLLHSLVVEHDIHDVLIEAGSKV 310

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           + SFI + LVD +I+Y++  V+G    P     +     ++ F        G+D+ L ++
Sbjct: 311 SGSFIEAGLVDELIVYQAPCVLGHEAQPMLTMTVNRLSSQRRFKLAHCSQIGTDIKLNFV 370


>gi|154248198|ref|YP_001419156.1| riboflavin biosynthesis protein RibD [Xanthobacter autotrophicus
           Py2]
 gi|154162283|gb|ABS69499.1| riboflavin biosynthesis protein RibD [Xanthobacter autotrophicus
           Py2]
          Length = 383

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 141/369 (38%), Positives = 208/369 (56%), Gaps = 16/369 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGI--VIGRGVTAYGGCPHAEVQAL 60
             D RFM+ AL+  +  +G T  NPSV  ++V+  DG   ++G   TA  G PHAE  AL
Sbjct: 15  EDDERFMAEALKVGQSGLGRTWPNPSVGAVVVQHVDGRPHIVGAAATAPTGRPHAEPIAL 74

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AGE ARG+T YVTLEPCSH+GR+PPCA  +I  G+RRVV  ++DPD RV GRG+  L 
Sbjct: 75  AQAGEAARGSTLYVTLEPCSHHGRTPPCAGAVIAAGVRRVVAAIEDPDHRVKGRGVARLR 134

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI +   +   +       ++ R  E R H+ LK+AVS D    +AG     +TG  +
Sbjct: 135 AAGIWVTVGVGAEQALADHAGHIRRVTEGRPHVLLKMAVSADGKAALAGPRPAVVTGPEA 194

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           + + HL+RA +DAILVG+GTV ADDP LTCRL G ++ SP+R++LD    + L+S +++T
Sbjct: 195 RARAHLMRAHADAILVGLGTVTADDPMLTCRLEGHEDRSPVRLVLDSGLDIPLESALVRT 254

Query: 240 ALLAPVIIVTENDDP-VLALAFRKKNINIIYCD------CRDLKKLLTILVGRGVTSLLV 292
           A   PV ++   D P   A A  ++ + ++            L  +L +L   G+T L+V
Sbjct: 255 ASDVPVWVIAAEDAPAERAAALMERGVEVLRAPRGGIEGRLHLPAVLKLLGLLGITRLMV 314

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGS 348
           EGG A A +F+ + LVD + ++ S +++G          PL   +    F  V R   G+
Sbjct: 315 EGGPATAAAFLEAGLVDEVAVFHSPVLLGPDAYHALAGRPLGRLFAPVGFAEVERAELGA 374

Query: 349 DVCLEYIGK 357
           D  +    +
Sbjct: 375 DRLVRLWRR 383


>gi|254173530|ref|ZP_04880202.1| riboflavin biosynthesis protein RibD [Thermococcus sp. AM4]
 gi|214032222|gb|EEB73052.1| riboflavin biosynthesis protein RibD [Thermococcus sp. AM4]
          Length = 360

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 119/356 (33%), Positives = 178/356 (50%), Gaps = 23/356 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +SS D RFM  AL  ++   G  + NP V  +IVKDG VIG G     G  HAEV A+E+
Sbjct: 1   MSSEDERFMRLALELAKRGEGWVNPNPMVGAVIVKDGEVIGVGWHRRFGEKHAEVNAIED 60

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + RGAT YVTLEPCSH+G+ PPCA  II+ G +RVVV + DP+  VSGRG++ +
Sbjct: 61  AKSRGHDVRGATMYVTLEPCSHWGKQPPCADRIIKEGFKRVVVAMVDPNPLVSGRGIEKM 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            + GI +   ++E E +     ++     K   +++K+A++ D  I      S  ITG  
Sbjct: 121 RKAGIEVEVGVLEDEARRLNEIFIKYVTTKMPFVSIKLALTLDGFIATETGSSQWITGEK 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-- 236
           ++ +V  LR +  AI+VG GTVLAD+P L CRL    E   +++ILD   +++   +   
Sbjct: 181 ARLKVQELRRRHMAIMVGAGTVLADNPRLNCRLENCPEK--VKVILDRSGRVAEAIRSGR 238

Query: 237 -IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
             +      VI  TE   P L     +             +++L  L   G+ S+L+EGG
Sbjct: 239 KFRLFEDGRVIFFTER--PELFEGIAEAY------PITGPEEILRKLGELGIDSVLIEGG 290

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGS 348
             +A  F++    D   L+    + G G  P     + +            +  G 
Sbjct: 291 -RIACQFLS--YADKFYLFYGPKLFGRGIKPFECLNVRDANEAPLLRIDSIERLGE 343


>gi|260172134|ref|ZP_05758546.1| riboflavin biosynthesis protein ribD [Bacteroides sp. D2]
 gi|315920443|ref|ZP_07916683.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694318|gb|EFS31153.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 351

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 113/346 (32%), Positives = 170/346 (49%), Gaps = 18/346 (5%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
            ++M   +  ++  +     NP V  +IV +G +IG G     G  HAEV A+    +E 
Sbjct: 10  EKYMRRCIELAKNGLCNVPPNPMVGAVIVCNGRIIGEGYHIRCGEAHAEVNAIRSVKDES 69

Query: 67  -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
             + +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP   V+GRG+Q L   G  
Sbjct: 70  LLKHSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGRE 129

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA--GCGSVPITGFISKNQ 182
           ++  ++E E +  +  ++T     R  ITLK A S D+ I M       V ++  ++   
Sbjct: 130 VIVGVLEEECQSLIRRFITFNTLHRPFITLKWAESADHFIDMERTSGMPVKLSSPLTSML 189

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  RA++DAI+VG  T L D+P LT R      H+P+R++LD    L  D +I      
Sbjct: 190 VHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDLQIFDEN-- 245

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
            P ++ TE   P         NI  I  D     LK+++ +L  R + SLLVEGG+ +  
Sbjct: 246 VPTLVFTEKKQPART------NITYISIDFNHNTLKQIMEVLYQRKIQSLLVEGGSQLLQ 299

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
           SFIN  L D   + +    +   G+ +P        +        F
Sbjct: 300 SFINDELWDEAYIEKCPSRL-HSGVKAPQINNNFSYSIEEHFERQF 344


>gi|158522090|ref|YP_001529960.1| riboflavin biosynthesis protein RibD [Desulfococcus oleovorans
           Hxd3]
 gi|158510916|gb|ABW67883.1| riboflavin biosynthesis protein RibD [Desulfococcus oleovorans
           Hxd3]
          Length = 363

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 125/358 (34%), Positives = 186/358 (51%), Gaps = 10/358 (2%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  FM+ AL  +    G TS NP V  ++V+DG V+G+G  A  G PHAEV A+++AGE
Sbjct: 2   DDTYFMNMALGLAERGTGFTSPNPVVGAVVVRDGRVVGQGFHAAAGKPHAEVVAIDDAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            ARGA  YVTLEPC+H GR+PPC + I + GI RVVV   D +  V+G G+Q+L  +GI 
Sbjct: 62  LARGADLYVTLEPCNHTGRTPPCTRKICDAGIARVVVATIDSNPHVAGGGIQYLESRGIA 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   + E+E K  +  +       R  +T+K A++ D  I      S  +TG  ++  VH
Sbjct: 122 VTVGVCEAEAKKQIEWFAKYVTTGRPFVTVKCAMTLDGRIATRTGDSKWVTGEAARAFVH 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            +R  SDAILVG+GT  AD+P LT R+ G++   PMRI+LD    +  D+ +      A 
Sbjct: 182 RMRHASDAILVGVGTANADNPRLTARVEGMRTRDPMRIVLDTKLSIREDAAMFDLDSSAE 241

Query: 245 V-IIVTENDDPVLALAFRKKNINI---IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
             I+V    D       + K       +     D+  L+  L   G+TSLL+EGG  V  
Sbjct: 242 TLIVVGPGHDKKKRDRLKGKARFFDAALAIGRIDMAGLMDGLGKMGITSLLIEGGGQVIG 301

Query: 301 SFINSRLVDSIILYRSQIVI-GEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCLE 353
           +   + +VD +  + +  ++ G+ G+P     G  +         V    F  D+ +E
Sbjct: 302 AAFAAGIVDKVCFFYAPKILGGDDGVPVCAGAGQEQMKNALPVRNVSVTRFDDDILIE 359


>gi|257455158|ref|ZP_05620396.1| riboflavin biosynthesis protein RibD [Enhydrobacter aerosaccus
           SK60]
 gi|257447491|gb|EEV22496.1| riboflavin biosynthesis protein RibD [Enhydrobacter aerosaccus
           SK60]
          Length = 359

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 116/364 (31%), Positives = 165/364 (45%), Gaps = 33/364 (9%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
             +MS A+  ++     T  NPSV C+IVKD  +IG G     G PHAEV AL +A E  
Sbjct: 14  QYYMSRAIELAKKGRFTTRPNPSVGCVIVKDNQIIGEGFHYQAGQPHAEVFALRQAYERD 73

Query: 67  ---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
               +GA AYVTLEPCSH+GR+PPCA  +I+ GI RVV+ V DP+ +V G G+  L Q G
Sbjct: 74  AKHLQGAIAYVTLEPCSHHGRTPPCADALIQAGISRVVIAVVDPNPKVDGGGIAKLQQAG 133

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I ++  + E         +          + LKIA S D    MA   S  IT   S+  
Sbjct: 134 IEVITGICEQAAYQLNEGFFKVMRGGLPFVRLKIATSLDGRTAMANGESKWITSDQSRED 193

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----HSPMRIILDPHFKLSLDSKII 237
           V  LRAQ+ AI+ G  T+L D P L  R   L         P+ ++LD   ++ +     
Sbjct: 194 VQRLRAQAGAIITGSETILQDHPALNIRSQQLGANLDDIPQPLLVVLDRRQRIQMT---- 249

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-RGVTSLLVEGGA 296
                          D         + + +I      L  LL  L     +  +LVE GA
Sbjct: 250 ---------------DAWYQSQITHRPVLLIQDSTMSLTTLLNTLKDNYQINDVLVEAGA 294

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLE 353
            VA SF+   LVD +++Y++   +G    P      +  + +     V  +   +D+ L 
Sbjct: 295 TVAASFLQQGLVDELVVYQAPCFLGNSAKPMINFNAQHIHQQIIASLVSHETMETDIKLT 354

Query: 354 YIGK 357
           Y   
Sbjct: 355 YRFD 358


>gi|289209046|ref|YP_003461112.1| riboflavin biosynthesis protein RibD [Thioalkalivibrio sp. K90mix]
 gi|288944677|gb|ADC72376.1| riboflavin biosynthesis protein RibD [Thioalkalivibrio sp. K90mix]
          Length = 396

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 124/382 (32%), Positives = 185/382 (48%), Gaps = 34/382 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D R M+ AL  +         NP V C++V++G V+G G+    G  HAEV AL  AGE 
Sbjct: 12  DRRHMARALELADLGRFSADPNPRVGCVLVREGEVVGEGLHWRAGESHAEVNALRAAGEA 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGAT YVTLEPCSH+GR+PPC + +I+ G+ RVV+ + DP+ +V G G++ L   GI +
Sbjct: 72  ARGATVYVTLEPCSHHGRTPPCTEALIQAGVARVVIAMQDPNPQVCGGGMEALRAAGIEV 131

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E+E +     ++ R  + R  + +K+A S D    MA   S  ITG  ++  V L
Sbjct: 132 ETGVLEAEARALNPGFVQRMEQGRPWVRIKLAASLDGRTAMASGESRWITGEAARRDVQL 191

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-----------------NGLQEHSPMRIILDPHF 228
            RA++ AIL G GTV+ADDP LT RL                 + L    P+R+ILD   
Sbjct: 192 WRARAGAILTGSGTVVADDPRLTVRLKPHQLAAQAGFPDDPHYSDLSTRQPLRVILDARL 251

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPV--LALAFRKKNINIIYC--------DCRDLKKL 278
           +    ++I+K+    PV I+T  D      A   R    ++              DL ++
Sbjct: 252 RTPPGAQILKSG---PVWILTGPDAARSPAADTLRGHGADVRPIALASDSPDGGLDLGEV 308

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLE 335
           L  L    V  L VE G  +A +      VD  +LY++ +++G    P    PL      
Sbjct: 309 LAELARAEVNELHVESGPGLAGALARGGWVDEWLLYQAPLLLGSSARPLVEWPLARMDER 368

Query: 336 KNFMCVRRDYFGSDVCLEYIGK 357
                +   + G  + L    +
Sbjct: 369 AELEILESRWVGDSLRLRARPR 390


>gi|88811147|ref|ZP_01126403.1| riboflavin biosynthesis protein RibD [Nitrococcus mobilis Nb-231]
 gi|88791686|gb|EAR22797.1| riboflavin biosynthesis protein RibD [Nitrococcus mobilis Nb-231]
          Length = 376

 Score =  315 bits (808), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 111/360 (30%), Positives = 181/360 (50%), Gaps = 10/360 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            ++ D ++M+ ALR ++  +  T  NP V C+IV++G ++G G     G PHAE+ AL  
Sbjct: 10  FTAADRQYMAHALRLAKRGLFSTGPNPRVGCVIVRNGQLVGEGWHRRAGEPHAEINALAA 69

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ ARGA  YVTLEPC H+GR+PPC   ++  GI RV+    DP+ RV+G+GL+ L+  
Sbjct: 70  AGQAARGAILYVTLEPCCHHGRTPPCTTALLSAGITRVIAACKDPNPRVAGQGLEQLTAA 129

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI     +M  + +     +  R      ++  K+A+S D    MA   S  IT   ++ 
Sbjct: 130 GITTRHGLMAEQAQTLNPGFFKRMRTGLPYVRCKLAMSLDGRTAMASGESRWITAAAARG 189

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKT 239
            VH LRA+SD +L G GTVLADDP+LT R          P R++LD   ++   +++++ 
Sbjct: 190 DVHRLRARSDGLLTGHGTVLADDPQLTARDVDTSWDLVQPCRLVLDSRLRIPKQARMLQE 249

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVTSLLVEGGA 296
                V+    +      L      +  I  D     +L++ LT +    +  LLVE G 
Sbjct: 250 PGKVAVLYAHHDRRRAQDLTAAGAELWPIEPDSDGRVELRQALTAIGNAEINELLVEAGP 309

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCL 352
            ++ + + + L+D +++Y +  ++G+   P     G +                G D+ L
Sbjct: 310 TLSGALLQADLIDELVVYIAPHLMGDEARPLLRLPGLVRMAERIPITITDMRALGPDLRL 369


>gi|212696303|ref|ZP_03304431.1| hypothetical protein ANHYDRO_00840 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676932|gb|EEB36539.1| hypothetical protein ANHYDRO_00840 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 359

 Score =  315 bits (808), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 111/356 (31%), Positives = 162/356 (45%), Gaps = 16/356 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M      ++   G T  NP V  ++VKDG +I  G     G  HAEV       E 
Sbjct: 3   DKYYMKKCFDLAKKARGKTLKNPLVGAVLVKDGKIISTGYHHEYGKVHAEVDCFNNLKEN 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GA  YV LEPCSHYG+  PC   II+  I++V++   D + +V   GL+ L +KGI +
Sbjct: 63  ADGAVLYVNLEPCSHYGKQGPCTLEIIKRNIKKVIISNIDTNPKV--DGLKVLREKGIEV 120

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E EGK     +       R  I LK A + D  I      S  I+   S+  VH 
Sbjct: 121 QTGLLEDEGKKLNEKFFFNIKYNRPLIALKYAQTLDGKISSNTNDSKWISNEFSREYVHR 180

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS---LDSKIIKTALL 242
           LR   DAI+VG  T++ D+P L  R+   +   P+R+I+D + ++     D KI      
Sbjct: 181 LRNDYDAIIVGKNTLIHDNPSLNSRIE--EGVDPVRVIVDTNLEIEKNYKDYKIFNLNSD 238

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
               I T  D     L   K     +  +  DL+ L+  L    + S+LVEGG+ + + F
Sbjct: 239 KKTYIATCKDTDNPDLNLIKCK---MKNNHVDLEDLVNKLYEMNIGSILVEGGSILNYDF 295

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
           +   LVD I  + S  +IG     SP     ++K      F       F  D+ +E
Sbjct: 296 LEEGLVDKIYEFISPKIIGGFNSKSPFYGRGVDKIKDGYKFEIEDIKRFDDDIMIE 351


>gi|254523112|ref|ZP_05135167.1| riboflavin biosynthesis protein RibD [Stenotrophomonas sp. SKA14]
 gi|219720703|gb|EED39228.1| riboflavin biosynthesis protein RibD [Stenotrophomonas sp. SKA14]
          Length = 396

 Score =  315 bits (807), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 124/356 (34%), Positives = 179/356 (50%), Gaps = 7/356 (1%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P S  D + M+ ALR +      T  NP V C+I     V+G+G     G PHAEV AL 
Sbjct: 39  PFSVLDHQHMANALRLAERGAYTTRPNPMVGCVIAHGERVVGQGWHQRAGGPHAEVFALR 98

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           EAG EARGATAYVTLEPC+HYGR+PPCA  +IE G+ RVV  + DP  +V G G   L +
Sbjct: 99  EAGSEARGATAYVTLEPCAHYGRTPPCALALIEAGVSRVVAAMRDPFPKVDGGGFDLLRE 158

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI + + +M ++ +     +L+R    R  + +K+A S D    MA   S  ITG  ++
Sbjct: 159 AGIDVSEGLMAAQARELNKGFLSRVERNRPWLRVKLAASLDGRTAMADGTSKWITGAAAR 218

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             V   RA++ AIL G  TVLADDP LT RL   +   P+R++LD   +    S++    
Sbjct: 219 EDVQHWRARAGAILTGADTVLADDPMLTVRLADAEVMPPLRVVLDSRLRSLECSRV--RE 276

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
              P + +          A        +     DL  +L +L  RG+  +  E GA +A 
Sbjct: 277 GGTPTLYLHNAIVSPPDAADAAFASVALRHGHLDLGAVLALLADRGINEVHTEAGATLAG 336

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCL 352
           + +    VD ++LY +  ++G+ G P     G      ++    V +   G D+ L
Sbjct: 337 ALLRGGWVDELLLYLAPTLLGDSGRPLLAGLGIDAMDQQRRLRVVDQRQVGEDLRL 392


>gi|118496729|ref|YP_897779.1| pyrimidine reductase/pyrimidine deaminase [Francisella tularensis
           subsp. novicida U112]
 gi|194324036|ref|ZP_03057811.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp.
           novicida FTE]
 gi|208780000|ref|ZP_03247343.1| riboflavin biosynthesis protein RibD [Francisella novicida FTG]
 gi|118422635|gb|ABK89025.1| pyrimidine reductase/pyrimidine deaminase [Francisella novicida
           U112]
 gi|194321933|gb|EDX19416.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp.
           novicida FTE]
 gi|208744004|gb|EDZ90305.1| riboflavin biosynthesis protein RibD [Francisella novicida FTG]
          Length = 355

 Score =  315 bits (807), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 108/323 (33%), Positives = 162/323 (50%), Gaps = 5/323 (1%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + D  +M  AL  +       S NP V C+IVK+G +I  G     G  HAEV AL +
Sbjct: 1   MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALIK 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
            G++A+GATAYVTLEPC H+GR+PPC   II+ GI++V++   DP+ +V+G+G++ L   
Sbjct: 61  VGDKAKGATAYVTLEPCCHHGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E + +     +   Q  K+  +  K A+S D  I +    S  I+   +  
Sbjct: 121 GITVEVGLLEKQAQELNKIFFHYQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSHQAFV 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
             H LR   DAIL+G  T++ D+P L  R+N  +   P R IL  H      +  +    
Sbjct: 181 NTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHPTRFILANHLTTINHNWRVLDQR 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297
            A  I V       +A    +  I             L  LL  +   G+TSLLVEGG  
Sbjct: 241 HAKTIFVCSKISAQVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGKIGITSLLVEGGNK 300

Query: 298 VAHSFINSRLVDSIILYRSQIVI 320
             +SFIN +LV+    Y + ++I
Sbjct: 301 TLNSFINQKLVNEFYTYLAPVII 323


>gi|255002722|ref|ZP_05277686.1| riboflavin biosynthesis protein (ribD) [Anaplasma marginale str.
           Puerto Rico]
          Length = 364

 Score =  315 bits (807), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 135/348 (38%), Positives = 192/348 (55%), Gaps = 11/348 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           MS ALR +   +G T  NP+V C++    G ++GRG TA GG PHAEV AL++AGE A G
Sbjct: 1   MSIALRLAHRGLGNTYPNPTVGCVVTNSAGSIVGRGWTAMGGRPHAEVVALKQAGEAAAG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           +T YVTLEPC H+G++ PC   +I  G+RRVV+   DPD RVSG+G + L+  G+ +   
Sbjct: 61  STVYVTLEPCCHHGQTGPCTAALISAGVRRVVIAALDPDKRVSGKGARSLADSGVEVKLG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +++ + +     +   + ++R  IT+K+A + D  I +       IT  +++  VH  RA
Sbjct: 121 VLQQQAEELNVGFFYSKTKRRPFITVKLATTLDGKISLPNGSDRWITNELTRKWVHKQRA 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
             D I+VG  TV+ADDP L CRL GL+EHSP+RI++D   KL    K++ T+ + P  I 
Sbjct: 181 MHDGIMVGSNTVVADDPMLDCRLPGLEEHSPIRIVIDRSGKLCSHHKVVATSDVVPTYIA 240

Query: 249 TENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGR-GVTSLLVEGGAAVAHSFINSR 306
           T+NDD     A R   I    C+  D L   +  L    G+T L VEGG  +    +   
Sbjct: 241 TDNDDHKALHAVRYLRI----CERGDFLAGTMNALAEELGITRLFVEGGGVLVTELLKRG 296

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEK---NFMCVRRDYFGSDVC 351
           LVD  I  R+  V GE G+ S L    L     +F  V+   F  D  
Sbjct: 297 LVDQFIWCRANRVCGEQGVESILNLNELPSGHCHFSRVKTLTFMEDTV 344


>gi|110636628|ref|YP_676835.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Cytophaga hutchinsonii ATCC 33406]
 gi|110279309|gb|ABG57495.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; 5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Cytophaga hutchinsonii ATCC 33406]
          Length = 352

 Score =  314 bits (806), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 110/358 (30%), Positives = 169/358 (47%), Gaps = 22/358 (6%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D R+M  AL  +    G  S+NP V C++VKDG +IG G     G PHAEV A++   
Sbjct: 2   DSDERYMRRALELAMLGSGHVSSNPMVGCVVVKDGHIIGEGYHEKFGQPHAEVHAIQSVP 61

Query: 65  EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           ++    G+T YV LEPCSHYG++PPC+  I++  I RVV    DP+  V+G G ++L   
Sbjct: 62  DKSLLEGSTLYVNLEPCSHYGKTPPCSHLIVDYKIARVVFANIDPNPLVAGAGFEYLMSN 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI ++  ++E EG+     + T    KR +I LK A + D  I      S  I+  +S+ 
Sbjct: 122 GIEVIQGVLEEEGRELNRRFFTYIENKRPYIILKWAETADGFIAKENFDSKWISNELSRK 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH  R + D +L+G  T L D+P L  R       +P+R  +D   ++ + + ++  + 
Sbjct: 182 LVHKWRTEEDVVLIGTNTALYDNPRLNVR--DWTGRNPVRAFIDKQLQVPVGAHLLDGSQ 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVA 299
                   E D   L        +  +  D  D  +  +   +  R   S+LVEGG  + 
Sbjct: 240 ETICYNYHEQDVRNL--------VEYVKVDPLDDMIDVIAEDMYVRKHLSILVEGGTQLL 291

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
            SF+   L D I ++RS    G  GI SP+             ++    D  + Y  K
Sbjct: 292 KSFLKKGLWDEIRIFRSPNEFGA-GIESPIV------RAKAFSQEMILDDTLIVYRNK 342


>gi|148244868|ref|YP_001219562.1| bifunctional riboflavin biosynthesis protein RibD [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326695|dbj|BAF61838.1| bifunctional riboflavin biosynthesis protein RibD [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 349

 Score =  314 bits (806), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 101/356 (28%), Positives = 179/356 (50%), Gaps = 20/356 (5%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             S  + + M+ A++ +        +NP V C+IVK   +I +G     G  H E+ AL+
Sbjct: 4   TFSKNETQNMTIAIKLALQGRYGVKSNPMVGCVIVKHSKIIAKGYHESFGQAHGEINALQ 63

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +   +A GAT YVTLEPCSH G++P CAQ II  G+++V++ + DP+  V+G+G+  L  
Sbjct: 64  QINYKAHGATLYVTLEPCSHQGKTPSCAQAIINSGVKKVIIAMLDPNPLVNGKGVVMLKY 123

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +   +++++  I    ++ R    +  I  K+A+S D    M+   S  IT  +++
Sbjct: 124 AGIEVKIGLLKNDASILNQGFIKRMQTNQPFIRCKVAMSIDGKTSMSSGESKWITSKVAR 183

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS-KIIKT 239
             V  LRA   AI+ G GT++ D+P +T RL+G+    P+R+++D   +++  S  I  T
Sbjct: 184 LDVQKLRANHQAIITGSGTIINDNPLMTVRLDGVNSK-PLRVVIDSKNQITDTSLNIFNT 242

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
              AP +I                N  ++     DL  +LT L  +G+ ++L+E G  + 
Sbjct: 243 D--APTLI------------LNPDNTKVLASGKLDLSNVLTQLGNQGINNVLLEAGPKLI 288

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCL 352
            + I   L+D  I+Y + I++G          +++   +     V     G ++ +
Sbjct: 289 GAMIKINLIDEFIIYMAPILMGSDANSILNLVIKDMSYKIKLDIVDVRMVGDNIKI 344


>gi|46446676|ref|YP_008041.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Candidatus Protochlamydia amoebophila UWE25]
 gi|46400317|emb|CAF23766.1| probable diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 368

 Score =  314 bits (806), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 117/367 (31%), Positives = 181/367 (49%), Gaps = 10/367 (2%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S     FM  A+  S         NP V C+IVKD  +IG+G T   G  HAE+ AL
Sbjct: 1   MKNSEIHHTFMLEAIAESWKARLHAPPNPWVGCVIVKDQKIIGKGYTYPSGQAHAEINAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           + A E A+GA+ YVTLEPCSH+G++PPC + II  GI  V V + DPD RV G+G+Q L 
Sbjct: 61  KSASENAKGASLYVTLEPCSHHGKTPPCTEAIIRAGILNVYVALKDPDSRVRGQGIQKLR 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI +   + E E K+ L  YL ++  +  +  LKIA S D         S  +T   +
Sbjct: 121 EAGIHVKVGIGEKEAKVVLTPYLYQRESQIPYTVLKIATSVDGRTAAVDGTSQWLTSSEA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238
           +   HL RA S A+++G GT   D P+LT R   +     P RI++D   K      +  
Sbjct: 181 RLDAHLQRAYSQAVVIGSGTATIDSPQLTVRHPTIHLFQQPQRILIDSSGKTPATGLLFD 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVE 293
             L   +++ T+         + K    +I          +L++   +L  RG+  +LVE
Sbjct: 241 QKLAPTLVLTTKASSITRQNEWLKTGAEVIVISATKNGHVNLREAWQLLAKRGIIQVLVE 300

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD---YFGSDV 350
           GG+ +  + +   LV+ + +Y   ++IG+ G+P   +E    K    ++      F +  
Sbjct: 301 GGSTLQSALLEIGLVNCLSVYTGPLLIGKSGLPLFSKEIPTLKKAKLLKIQNIKQFDNSF 360

Query: 351 CLEYIGK 357
            ++Y+ K
Sbjct: 361 RVDYLLK 367


>gi|145628121|ref|ZP_01783922.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae
           22.1-21]
 gi|144979896|gb|EDJ89555.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae
           22.1-21]
          Length = 339

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 117/339 (34%), Positives = 177/339 (52%), Gaps = 20/339 (5%)

Query: 35  IVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
           I K+G ++G G     G PHAE  AL +AGE A+GATAYVTLEPCSHYGR+PPCA  +IE
Sbjct: 3   IGKNGEIVGEGFHFKAGQPHAERVALAQAGENAKGATAYVTLEPCSHYGRTPPCALGLIE 62

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHIT 153
            G+ +V+  + DP+ +V+G+GL+ LS  GI     ++  + +     +L R  +    + 
Sbjct: 63  AGVVKVIAAMQDPNPQVAGKGLKMLSDAGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQ 122

Query: 154 LKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213
           LK+A+S D    MA   S  ITG  +++ V  +RA+S A+L    TV+ADDP L  R + 
Sbjct: 123 LKLAMSLDGRTAMASGESKWITGPDARSDVQKMRAKSSALLSTSTTVIADDPSLNVRWDE 182

Query: 214 LQE-----------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
             E             P+R+ILD   ++    K+  T   +PV +V+   +P     F  
Sbjct: 183 FPENLKTEYKEEDLRQPVRVILDSQHRIQPTHKLFLT--HSPVWLVSS--EPRDLTGFPD 238

Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
               II      LK+L+  L  R + +L VE GA +A S I+++LVD +I+Y +  ++G+
Sbjct: 239 FCEQIILPKENLLKELMRELGKRQINTLWVEAGANLAGSLIDAKLVDELIIYIAPKLLGD 298

Query: 323 GGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
                     L +      +     +  G D+ L Y  K
Sbjct: 299 NARGLCQLPNLTKLADAPLWQLNELEQIGDDIKLTYTPK 337


>gi|328676184|gb|AEB27054.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Francisella cf. novicida Fx1]
          Length = 355

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 108/323 (33%), Positives = 162/323 (50%), Gaps = 5/323 (1%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + D  +M  AL  +       S NP V C+IVK+G +I  G     G  HAEV AL +
Sbjct: 1   MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALTK 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A ++A+GATAYVTLEPC H+GR+PPC   II+ GI++V++   DP+ +V+G+G++ L   
Sbjct: 61  AVDKAKGATAYVTLEPCCHHGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E + +     +   Q  K+  +  K A+S D  I +    S  I+   +  
Sbjct: 121 GITVEVGLLEKQAQELNKIFFHYQTTKKPFVYGKWAMSLDGKIAVNDGDSKKISSHQAFV 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
             H LR   DAIL+G  T++ D+P L  R+N  +   P R IL  H      +  +    
Sbjct: 181 NTHELRNICDAILIGKQTLIDDNPSLNVRININKIKHPTRFILANHLTTINHNWRVLDQR 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297
            A  I V       +A    +  I             L  LL  +   G+TSLLVEGG  
Sbjct: 241 HAKTIFVCSKISAQVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGNIGITSLLVEGGNK 300

Query: 298 VAHSFINSRLVDSIILYRSQIVI 320
             +SFIN +LV+    Y + ++I
Sbjct: 301 TLNSFINQKLVNEFYTYLAPVII 323


>gi|295088113|emb|CBK69636.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bacteroides xylanisolvens XB1A]
          Length = 351

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 118/357 (33%), Positives = 181/357 (50%), Gaps = 23/357 (6%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
            ++M   +  ++  +   S NP V  +IV +G +IG G     G  HAEV A+    +E 
Sbjct: 10  EKYMRRCIELAKNGLCNVSPNPMVGAVIVCNGRIIGEGYHIRCGEAHAEVNAIRSVKDES 69

Query: 67  -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
             + +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP   V+GRG+Q L   G  
Sbjct: 70  LLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGRE 129

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQ 182
           +   ++E E K  +  ++T  +  R  ITLK A S D+ I +      P+  +  ++   
Sbjct: 130 VTVGVLEEECKSLIRRFITFNMLHRPFITLKWAESADHFIDIERTDGKPVVLSSPLTSML 189

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  RA++DAI+VG  T L D+P LT R      H+P+R++LD    L  D +I      
Sbjct: 190 VHKKRAEADAIMVGRRTALLDNPALTVR--NWYGHNPIRVVLDRTLSLPNDLQIFDGN-- 245

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
            P +I TE   P       KKNI  I  +     LK+++  L  R + SLLVEGG  +  
Sbjct: 246 VPTLIFTEKQQP------EKKNITYITINFSHNPLKQIMEALYQRKIQSLLVEGGRQLLQ 299

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           SFI++ L D   + +       G + S ++   ++ NF     ++F   +   Y+ +
Sbjct: 300 SFIDNELWDEAYIEKCP-----GRLHSGVKAPQMDDNFSYSIEEHFERQIW-HYVRR 350


>gi|91977144|ref|YP_569803.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris
           BisB5]
 gi|91683600|gb|ABE39902.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Rhodopseudomonas palustris BisB5]
          Length = 396

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 155/366 (42%), Positives = 205/366 (56%), Gaps = 18/366 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D RFM  AL   R  +G T+TNP+V  +IVKDG+++GRG T  GG PHAEV+AL  AGE 
Sbjct: 28  DLRFMQLALTLGRRGLGRTATNPAVGAVIVKDGVILGRGWTEVGGRPHAEVEALARAGEA 87

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARGAT YVTLEPCSH GRSPPCA  +I  GI RVV  ++DP+  V+G+G   L   GI +
Sbjct: 88  ARGATLYVTLEPCSHVGRSPPCADAVIAAGISRVVSAIEDPNPLVAGQGHDKLRAAGIAV 147

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +  +E       +  R  ++R H+ LK+AVS D+ I  AG   V ITG  ++ +VHL
Sbjct: 148 DVGLCAAEAARDHAGHFRRVRDRRPHVVLKLAVSTDDKIARAGHKPVAITGEETRARVHL 207

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRAQSDAILVGIGTVLADDPELT RL G+ + SP+R++LDP  ++   SK++ +A   P+
Sbjct: 208 LRAQSDAILVGIGTVLADDPELTVRLPGMAKQSPIRVVLDPSLRIPGGSKLVHSARQTPL 267

Query: 246 IIVTENDDPVLALAFRKKNINIIYC-------------DCRDLKKLLTILVGRGVTSLLV 292
            ++        A          +                  DL  +L  L  +GVT LLV
Sbjct: 268 WLIASEVAEAAAATRLGAAGAHVIHVADRPSVTDGQSRPGLDLAAVLATLSEKGVTRLLV 327

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGS 348
           EGGA VA + ++  L D I L R +  IG  G+ +    PL        +     +  G 
Sbjct: 328 EGGARVASALVSENLADEIWLLRGETTIGADGVDALDRLPLTTITQSSGWRVRDSERLGP 387

Query: 349 DVCLEY 354
           D    Y
Sbjct: 388 DTLTIY 393


>gi|258645658|ref|ZP_05733127.1| riboflavin biosynthesis protein RibD [Dialister invisus DSM 15470]
 gi|260403024|gb|EEW96571.1| riboflavin biosynthesis protein RibD [Dialister invisus DSM 15470]
          Length = 434

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 124/365 (33%), Positives = 190/365 (52%), Gaps = 15/365 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D +FM+ AL  +   +G T  NP V  ++VKDG +IG G   + G PHAEV A  +  
Sbjct: 4   DDDKKFMARALELAANGMGHTRPNPMVGAVLVKDGEIIGEGWHEFYGGPHAEVNAFADCR 63

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            +  GAT YVTLEPC HYG++PPCA  I+   + RVVV + DP+  VSG+G++ L   GI
Sbjct: 64  ADPAGATLYVTLEPCCHYGKTPPCADLIVSKNLERVVVAMQDPNPLVSGKGIRKLKDAGI 123

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   +ME E ++    ++    EK+  +  K AVS D         S  I+   S+ +V
Sbjct: 124 FVTTGVMEKEAQVLNEVFMKFITEKKPFVLYKSAVSMDGKTACHTGKSQWISSEESREEV 183

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
             LR    A++ G GT+ ADDP LT R  GL++  P+RII+D    +S++S++       
Sbjct: 184 RTLRGLYAAVMAGAGTIAADDPLLTARTEGLED--PVRIIVDGKLSVSMESRVFGGESRV 241

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAV 298
            +++ T +       AF+ K I +I+ D     C DL+  +  L  +G+ S+L+EGGA  
Sbjct: 242 -IVLTTSSAASEKVKAFQSKGIEVIFADSDTEGCVDLEAAMIGLAVKGIDSILLEGGAET 300

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
           A +   + +VD I  Y + I+IG    P  +                +R +  G D+ +E
Sbjct: 301 AAAAFEAGIVDKIRFYMAPILIGGKDAPGAVGGTGAALIPEAVQLENIRTERSGVDLVVE 360

Query: 354 -YIGK 357
            Y+ K
Sbjct: 361 GYVKK 365


>gi|92114703|ref|YP_574631.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Chromohalobacter salexigens DSM 3043]
 gi|91797793|gb|ABE59932.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Chromohalobacter salexigens DSM 3043]
          Length = 380

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 114/358 (31%), Positives = 184/358 (51%), Gaps = 21/358 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL+ +R     T  NP V C++V  G ++G G  AY G PHAEV AL EAG+ A GA
Sbjct: 10  MARALQLARHGCYTTHPNPRVGCVVVNAGRIVGEGYHAYAGGPHAEVHALREAGDAAAGA 69

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129
           T YVTLEPCSH+GR+PPCAQ +I+ G+RRVVV + DP+ +V+GRG+  L + GI VD  +
Sbjct: 70  TVYVTLEPCSHHGRTPPCAQALIDAGVRRVVVAMVDPNPQVAGRGVAMLREAGIEVDVGL 129

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           + ++ +     ++ R  +    + LK+A+S D    MA   S  ITG  ++ +V  LRA+
Sbjct: 130 LATDAEALNVGFVKRMRDGLPFVRLKMAMSLDGRTAMASGESQWITGASARTEVQRLRAR 189

Query: 190 SDAILVGIGTVLADDPELTCRLNGL--------QEHSPMRIILDPHFKLSLDSKIIKTAL 241
           + A++ G+ +V+ D+  LT R + L            P+R+++D   +L L +  ++   
Sbjct: 190 ASAVMTGVDSVIFDNSRLTVRADQLALEDGETIARRQPLRVVVDSRLRLPLAAACLREP- 248

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILV-GRGVTSLLVEGG 295
               ++ T   D     A  +    ++          DL+ LL  L        +L+E G
Sbjct: 249 -GRTLVATCTPDEARREALSRAGAEVLMLPADEGGRVDLRALLAYLARDEQCNEVLLETG 307

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSD 349
           A +A + ++   +D + L+ +  ++G    P      LE    ++          G D
Sbjct: 308 ATLAGAMLDLEAIDEMHLFVAPTLLGGEARPLFALPGLERMAQQRPLHIDDIRAVGQD 365


>gi|297155739|gb|ADI05451.1| putative riboflavin/cytosine deaminase [Streptomyces
           bingchenggensis BCW-1]
          Length = 378

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 120/368 (32%), Positives = 180/368 (48%), Gaps = 18/368 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62
           ++ +A  M  A+  +   +G TS NP V C+I+  DG   G G     G PHAEV AL  
Sbjct: 3   TTAEAEAMRRAIALAARGLGHTSPNPVVGCVILDADGRTAGEGWHQRAGGPHAEVHALRA 62

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARG TA VTLEPC+H GR+ PCAQ +++ GI RVV  V DP+ + +G      +  
Sbjct: 63  AGERARGGTAVVTLEPCNHTGRTGPCAQALLDAGIVRVVYAVADPNAKAAGGAATLAAAG 122

Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
             +   ++  +      A+LT     R  +  K A + D     A   S  IT   S+  
Sbjct: 123 TAVESGLLADQAAAVNEAWLTSMRFGRPFVLWKYAATLDGRSAAADGTSRWITSAESRAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--------EHSPMRIILDPHFKLSLDS 234
           VH LRA+SDA++VG GT+ ADDP L  R                P+R++LD    ++ D+
Sbjct: 183 VHRLRAESDAVVVGSGTLRADDPHLAVRGASGSNGASGSNGARQPLRVVLDSKATIAPDA 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRK--KNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
           +++     AP +I    D P + LA  +  +    I     D+  LL  L GRG+ S+L+
Sbjct: 243 RVLD--GTAPTLIAVAEDAPAVRLAGAETVRLPRAISGPGLDIPALLGELHGRGIRSVLL 300

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGS 348
           EGG  +A +F+ +R VD ++ Y +  ++G  G P+  + G                  G 
Sbjct: 301 EGGPTLAGAFLAARAVDKVVGYLAPALLGA-GAPALADAGITTITQALRLELTDVTRLGP 359

Query: 349 DVCLEYIG 356
           D+ +  + 
Sbjct: 360 DLRITAVP 367


>gi|264677184|ref|YP_003277090.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni CNB-2]
 gi|262207696|gb|ACY31794.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni CNB-2]
          Length = 369

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 110/363 (30%), Positives = 171/363 (47%), Gaps = 15/363 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQA 59
           M  S+    FM+ AL  +   + L+S NP V C+IV     +IG+G T   G PHAEV A
Sbjct: 1   MTPSA---HFMNKALEQAAQALFLSSPNPRVGCVIVDASERIIGQGFTQQTGGPHAEVMA 57

Query: 60  LEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           L +A   G + RGATAYVTLEPCSH+GR+ PC   +I  GI +VV  + DP+ +V+G+G 
Sbjct: 58  LRDAAAKGNDVRGATAYVTLEPCSHHGRTGPCCDALIAAGIGKVVGALTDPNPQVAGQGF 117

Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
           + L   G+ +      +E +     + +R +     + +K A S D +  +    S  IT
Sbjct: 118 ERLRAAGVDVEIGPGGAESRELNIGFFSRMIRGIPWVRMKAASSLDGITALHNGQSQWIT 177

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
              ++   H  RA++  IL GIGTVL D+P +  R        P   ++D    + LD+ 
Sbjct: 178 SAAARADGHAWRARACTILTGIGTVLEDNPRMNVRDVD-TPRQPRIAVVDSKLDIPLDAH 236

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIY--CDCRDLKKLLTILVGRGVTSLLVE 293
           ++K      +   +     + AL      +  +       DL  +L  L  RG   L VE
Sbjct: 237 VLKAPSGCLIYTCSTKQSRIEALQALGATVIDMPNAAGKVDLAAMLRDLAQRGTNELHVE 296

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            G  +  S I   LVD ++ Y++  ++G G +      PL+        +       G D
Sbjct: 297 AGFKLNGSLIREGLVDELLFYQAPKLLGTGAMGIANFGPLDRLDQGLPLVFHDVARLGPD 356

Query: 350 VCL 352
           + +
Sbjct: 357 LRI 359


>gi|330863855|emb|CBX73948.1| riboflavin biosynthesis protein ribD [Yersinia enterocolitica
           W22703]
          Length = 337

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 115/337 (34%), Positives = 168/337 (49%), Gaps = 18/337 (5%)

Query: 37  KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
           +DG ++G G     G PHAEV AL  AGE+ARGATAYVTLEPCSH+GR+PPCA  ++  G
Sbjct: 2   RDGEIVGEGYHLRAGEPHAEVHALRMAGEKARGATAYVTLEPCSHHGRTPPCADALLTAG 61

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
           ++RVV  + DP+ +V+GRGL  L Q G+ +   +M +E +     +L R      ++ LK
Sbjct: 62  VKRVVAAMQDPNPQVAGRGLYKLKQAGVEVDHGLMLAEAEAVNLGFLKRMRTGFPYLQLK 121

Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215
           +A S D    MA   S  IT   ++  V   RAQS AIL    TVLADDP LT R   L 
Sbjct: 122 MAASLDGRTAMASGESQWITSPQARQDVQRFRAQSSAILSTSATVLADDPALTVRWQELD 181

Query: 216 E-----------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
                         P+RII+D H +++   K+I+     P  +     D        ++ 
Sbjct: 182 AQTQALYPQDALRQPVRIIVDSHNRVTPQHKVIQQD--GPCWLARVETDEQSWPNNVEQL 239

Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           +   + +  DL  L+  L  R + S+ VE G   A + + + +VD +ILY +  ++G   
Sbjct: 240 LLPRHGNGVDLVLLMMQLGKRQINSVWVEAGPQFAGALLQAGVVDELILYIAPKLLGSDA 299

Query: 325 IP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
                 + L +      F+       G D+ L    K
Sbjct: 300 RGLCQLTGLTQLSDAPEFVFSEVRQVGPDLRLRLQPK 336


>gi|297622519|ref|YP_003703953.1| riboflavin biosynthesis protein RibD [Truepera radiovictrix DSM
           17093]
 gi|297163699|gb|ADI13410.1| riboflavin biosynthesis protein RibD [Truepera radiovictrix DSM
           17093]
          Length = 393

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 111/326 (34%), Positives = 166/326 (50%), Gaps = 14/326 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
           +   R+MS AL  +    G T+ NP V C+IV+D  +IG G     G  HAEV+AL++A 
Sbjct: 10  AEHERYMSRALELAERGRGSTAPNPMVGCVIVRDDEIIGEGWHERAGEAHAEVRALQDAR 69

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
             G   RGAT YVTLEPC+H GR+PPC + I+E G+RRVV+   DPD RV G G+  L  
Sbjct: 70  SRGARVRGATLYVTLEPCNHTGRTPPCTEAILEAGVRRVVIAALDPDPRVDGSGVARLQA 129

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            G+ +V  ++ +E +     + T  +  R  +  K A++ D  I      S  ITG  ++
Sbjct: 130 AGVEVVTGVLAAEAEAQNEVFRTVHLRGRPWVLYKTAMTLDGKIATRTGRSRWITGPAAR 189

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            +V   RA   A+ VG+ TVL DDP LTCR+ G   H+P +++ D   +    +++    
Sbjct: 190 ERVQRWRAHLSAVAVGVNTVLLDDPLLTCRVPG--GHTPHKVVFDTVARTPPTAQLFHPD 247

Query: 241 LLAP----VIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLV 292
                    + VTE        A R +   ++         D++  L  L   GV +LL+
Sbjct: 248 PQGEAARVTLFVTERAPAARVAALRYRGAEVVVLPETRGRADVRSALAHLKEVGVQTLLL 307

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQI 318
           EGG  +A SF   + VD + ++    
Sbjct: 308 EGGGTLAWSFFEVQAVDRVAVFIGPK 333


>gi|224476858|ref|YP_002634464.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421465|emb|CAL28279.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 349

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 121/316 (38%), Positives = 167/316 (52%), Gaps = 7/316 (2%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           RF+  A++ ++   G T  NP+V  ++V  G ++G G     G  HAEVQAL+ AG++AR
Sbjct: 3   RFLENAIQLAKMAEGQTGVNPAVGSVVVNHGRIVGLGAHLKQGERHAEVQALDMAGDQAR 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           G T YV+LEPC+HYG +PPC   IIE GI +VV  +   D+ +   G + L   GI V  
Sbjct: 63  GGTIYVSLEPCTHYGSTPPCVNKIIEAGISKVVYAM--KDITLDSPGDEILKSAGIEVVY 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
             E E +     +   +V K   +TLK++VS D         S  IT    K  V   RA
Sbjct: 121 QHEVEAEKMYKDFFAAKVSKIPEVTLKVSVSLDGKQATDSGQSQWITNPGVKQDVLKNRA 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DAIL G GTV AD+P LT R+ G  E  P+R+ILD    LS    I     L PV + 
Sbjct: 181 RHDAILTGAGTVEADNPSLTVRIEG--ERQPIRVILDKSGSLSFQENIFHD-QLTPVWLY 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           TEN+   +       NINII  +   +  +L  L  +G+ SL VE G  V+  F+ S  V
Sbjct: 238 TENNA--VQNKEHLDNINIIQLEECSVHNILRDLYNKGIGSLYVEAGPNVSSQFLQSECV 295

Query: 309 DSIILYRSQIVIGEGG 324
            ++I+Y +  VIG  G
Sbjct: 296 QTLIIYYAPKVIGGSG 311


>gi|317052209|ref|YP_004113325.1| riboflavin biosynthesis protein RibD [Desulfurispirillum indicum
           S5]
 gi|316947293|gb|ADU66769.1| riboflavin biosynthesis protein RibD [Desulfurispirillum indicum
           S5]
          Length = 377

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 181/371 (48%), Gaps = 23/371 (6%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQA 59
           M  S+     M  AL  +R  +G TS NP V  +IV   G ++G G  A  G  HAEV A
Sbjct: 1   MTRSAQYEVSMQMALNLARKGLGFTSPNPVVGSVIVDAAGAIVGMGYHAKAGMAHAEVVA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           L++AGE+ARGAT YVTLEPC   GR+PPC   II  GI++VV    DP+  V+GR    L
Sbjct: 61  LKDAGEKARGATLYVTLEPCCVQGRTPPCTDAIIRAGIQKVVYAAQDPNPAVAGRSRAIL 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++E E +     +      +  +ITLK A++ D    +A   S  ITG  
Sbjct: 121 EAAGIAVESGILEPEARYLNRHFNKHITRQMPYITLKSAITLDGKTAVANGQSRWITGEE 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKII 237
           ++   H LR   DAI VGIGT++ADDP LTCR  G      P  +I D   +   ++ ++
Sbjct: 181 ARQDGHFLRGIHDAIAVGIGTIIADDPLLTCRHGGKTALPHPDVVIFDTFLRTPRNAAVL 240

Query: 238 K-TALLAPVIIVTEND--DPVLALAFRKKNINIIYCD----CRDLKKLLTILVGR-GVTS 289
           + +     VIIVT +   +   A       I +I          L++    L  + G+TS
Sbjct: 241 RPSEAERRVIIVTSSTMMESDTATRLLGAGIQLIGLPPASQGLPLQQAFAALYEQYGITS 300

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG--------IPSPLEEGYLEKNFMCV 341
           +LVEGGA +  + I   L D  ++Y +  + G+ G        +P+P             
Sbjct: 301 VLVEGGAGLTSAIIKETLEDEHVIYMAPKLFGDEGMTWSGSLKVPTP----DKAYQLRLH 356

Query: 342 RRDYFGSDVCL 352
             +  G+D+ +
Sbjct: 357 SVERLGNDIRI 367


>gi|190571227|ref|YP_001975585.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|190357499|emb|CAQ54935.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
          Length = 405

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 134/396 (33%), Positives = 189/396 (47%), Gaps = 48/396 (12%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FMS AL+ +   +G  + NP+V C+IVK+G+VIG G T  GG PHAEV AL+ A + 
Sbjct: 3   DDYFMSIALKLAEKSLGSVAPNPAVGCIIVKNGMVIGEGYTGIGGRPHAEVVALQNAKDL 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
              AT YVTLEPC H+G + PC   II+ GI+RVV+   DPD RVSG G++ L + GI +
Sbjct: 63  THSATMYVTLEPCCHFGVTEPCTAEIIKSGIKRVVIAAIDPDSRVSGGGIKALKEAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M+ E ++    + T +   R  I  KIA + D  I      S  IT   ++N VH 
Sbjct: 123 EQGIMQKEAEVLNVGFFTTKEFHRPFIACKIATTLDGKIATFTGDSKWITSEDTRNWVHE 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL--- 242
           LRA+ DAI++G  T++ DDP LTCRL GL++ SP+R+I+D   KL  +  I KTA     
Sbjct: 183 LRAKYDAIMIGSSTLINDDPLLTCRLPGLEDRSPIRLIIDSQGKLKEEHNIAKTADTLYN 242

Query: 243 ---------------------------------------APVIIVTENDDPVLALAFRKK 263
                                                      ++T N            
Sbjct: 243 HDLSKEPTAYLSMSFQRVTLESRKKEEEWIPVSRTGMTGGSTWVITNNKVKKKIKNINYL 302

Query: 264 NINIIYCDCRDLKKLLTIL-VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
            +N        LK + + L    G+T LLVEGG  +    +   L+D +I+ RS  ++G 
Sbjct: 303 VVNSNNAGKVCLKDMASKLVSEIGITRLLVEGGGILITELLKHNLIDRLIICRSGKILGN 362

Query: 323 GGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEY 354
              P   + G    N    F  V+   F  DV   +
Sbjct: 363 DATPFIGDLGIQSINNCHKFKKVKIIEFSEDVVEVW 398


>gi|114704832|ref|ZP_01437740.1| riboflavin-specific deaminase / reductase [Fulvimarina pelagi
           HTCC2506]
 gi|114539617|gb|EAU42737.1| riboflavin-specific deaminase / reductase [Fulvimarina pelagi
           HTCC2506]
          Length = 381

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 166/367 (45%), Positives = 223/367 (60%), Gaps = 12/367 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQ 58
           +S+ + RFM+AA+RF   H GLT TNPSVA LIV+D      ++GRG+TA GG PHAE Q
Sbjct: 14  LSAANERFMAAAIRFGFRHAGLTGTNPSVATLIVRDDGAGPRIVGRGITARGGRPHAEAQ 73

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           AL EAG  ARGA AYVTLEPC+H+GR+PPCA+ ++  G+ RVV    DPD RV G+G   
Sbjct: 74  ALGEAGTLARGAVAYVTLEPCAHHGRTPPCAEALVASGVSRVVSAAADPDPRVDGKGHAI 133

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L + G+ +  R+M  E    L AYLTR    R  ITLK+AVS D MIG  G G V ITG 
Sbjct: 134 LEKGGLSVTPRVMAKEAASDLSAYLTRHARNRPQITLKMAVSPDGMIGRKGHGQVFITGP 193

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
           I+  Q HL+RA+ DAILVG+GTV  DDP L CRL GL+  SP RI+LDP   +  ++ ++
Sbjct: 194 IANRQTHLVRARHDAILVGMGTVREDDPGLDCRLPGLENRSPRRIVLDPDLTIEPETGLV 253

Query: 238 KTALLAP-VIIVTENDDPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSL 290
           ++A   P  I+   + D     +      + + CD         L +L+  L   G+ ++
Sbjct: 254 RSARQTPLTIVARGDTDADKRQSLMAAGADFVACDVVPGTGRVALPELMEDLGATGIQNI 313

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
           LVEGGA V  SF+ + LVD +IL   + ++GEGGI SP++    ++ F    R  FG D 
Sbjct: 314 LVEGGATVGESFLEADLVDRLILVEGETMVGEGGIVSPIDVASGKQRFKLTERLRFGPDQ 373

Query: 351 CLEYIGK 357
             E+  +
Sbjct: 374 WFEFERR 380


>gi|226942824|ref|YP_002797897.1| riboflavin biosynthesis protein RibD [Azotobacter vinelandii DJ]
 gi|226717751|gb|ACO76922.1| riboflavin biosynthesis protein RibD [Azotobacter vinelandii DJ]
          Length = 361

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 121/357 (33%), Positives = 175/357 (49%), Gaps = 23/357 (6%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL  +R  +  T  NP V C+IV  G ++G G     G PHAEV AL +AGE ARGA
Sbjct: 1   MARALELARQGLYSTHPNPRVGCVIVAAGRIVGEGWHVRAGEPHAEVHALRQAGETARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPCSH+GR+PPCA+ ++  G+ RVV  + DP+ +VSGRGL  L Q GI +   +
Sbjct: 61  TAYVTLEPCSHHGRTPPCAEALVAAGVGRVVAAMQDPNPQVSGRGLARLRQAGIEVEVGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E+E +     ++ R       + +K+A+S D    MA   S  ITG  ++  V  LRA+
Sbjct: 121 LEAEARALNAGFVKRMEHGLPLVRVKLAMSLDGRTAMASGESQWITGAPARAAVQRLRAR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDSKIIKT 239
           S  +L G  TVL D   LT R   L           +  P+R+++D   ++ LD    + 
Sbjct: 181 SSVVLTGADTVLVDHARLTVRGEELGLAPEQVALALQRPPLRVLVDGRLRVPLDVPFFQ- 239

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGG 295
               P ++ T +      + +R     ++     D +     LL  L  RG   +LVE G
Sbjct: 240 --AGPALVATVSA--EREVDYRAAGHELLAVPGEDGRVDLPALLAELAARGANEVLVEAG 295

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSD 349
             +A +F    LVD   L+ +   +G    P    PLE     +          G D
Sbjct: 296 PRLAGAFARQGLVDEYRLFVAPKFLGSTARPLLELPLERMAEARELKIRDIRAVGED 352


>gi|298482442|ref|ZP_07000628.1| riboflavin biosynthesis protein RibD [Bacteroides sp. D22]
 gi|298271421|gb|EFI12996.1| riboflavin biosynthesis protein RibD [Bacteroides sp. D22]
          Length = 351

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 118/357 (33%), Positives = 181/357 (50%), Gaps = 23/357 (6%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
            ++M   +  ++  +   S NP V  +IV +G +IG G     G  HAEV A+    +E 
Sbjct: 10  EKYMRRCIELAKNGLCNVSPNPMVGAVIVCNGRIIGEGYHIRCGEAHAEVNAIRSVKDES 69

Query: 67  -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
             + +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP   V+GRG+Q L   G  
Sbjct: 70  LLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGRE 129

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQ 182
           +   ++E E K  +  ++T  +  R  ITLK A S D+ I +      P+  +  ++   
Sbjct: 130 VTVGVLEEECKSLIRRFITFNMLHRPFITLKWAESADHFIDIERTDGKPVVLSSPLTSML 189

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  RA++DAI+VG  T L D+P LT R      H+P+R++LD    L  D +I      
Sbjct: 190 VHKKRAEADAIMVGRRTALLDNPALTVR--NWYGHNPIRVVLDRTLSLPNDLQIFDGN-- 245

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
            P +I TE   P       KKNI  I  +     LK+++  L  R + SLLVEGG  +  
Sbjct: 246 VPTLIFTEKQQP------EKKNITYITINFSHNPLKQIIEALYQRKIQSLLVEGGRQLLQ 299

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           SFI++ L D   + +    +   G+ +P     ++ NF     ++F   +   Y+ +
Sbjct: 300 SFIDNELWDEAYIEKCPSRL-HSGVKAP----QMDDNFSYSIEEHFERQIW-HYVRR 350


>gi|116623314|ref|YP_825470.1| 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidine
           deaminase [Candidatus Solibacter usitatus Ellin6076]
 gi|116226476|gb|ABJ85185.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 369

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 111/319 (34%), Positives = 162/319 (50%), Gaps = 6/319 (1%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +M  AL  +R    L S NP V  +IV+DG V+GRG   Y G  HAE+ AL +AGE+ARG
Sbjct: 5   YMREALDLARKGRSLASPNPLVGAVIVRDGKVVGRGFHTYAGLHHAEIIALAQAGEQARG 64

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI--IVD 127
           A  Y+ LEPCSH GR+PPC   +I  GI RVV  + DP+  V+G+G   L + GI  ++ 
Sbjct: 65  AEIYLNLEPCSHQGRTPPCVDALIRAGIARVVAPLSDPNPLVAGQGFARLREAGIEVVMA 124

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
               +E       +L   +  R  +TLK A++ D  I         IT   ++  V  LR
Sbjct: 125 DEFAAEAGKLNEPFLHFMLTGRPLVTLKTAITLDGKISAPDDNRGWITSERARAHVQELR 184

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
              DAIL GIGTVLADD  L+ R    +    +RI++D   +L LDSK+ ++A    + I
Sbjct: 185 HDHDAILTGIGTVLADDCLLSDRTGHPRCRPLLRIVMDSQLRLPLDSKMARSANGDVLAI 244

Query: 248 VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            T             + I ++  D      DL+ ++  L      SL++E G+ +  S +
Sbjct: 245 TTSAASSERRKMLESRGIQVLVFDGPGGRADLRSIVEWLGRHRYLSLMIEAGSKLNWSAL 304

Query: 304 NSRLVDSIILYRSQIVIGE 322
              +VD +  Y    ++G 
Sbjct: 305 EGNVVDRVFFYYGPKILGG 323


>gi|213962287|ref|ZP_03390550.1| riboflavin biosynthesis protein RibD [Capnocytophaga sputigena
           Capno]
 gi|213954953|gb|EEB66272.1| riboflavin biosynthesis protein RibD [Capnocytophaga sputigena
           Capno]
          Length = 323

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 112/325 (34%), Positives = 173/325 (53%), Gaps = 11/325 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--A 67
            +   ++ +   +G T  NP V C+IV DG +IG G     G PHAEV+A+    ++   
Sbjct: 1   MIKRCIQLAYNGLGTTYPNPLVGCVIVHDGKIIGEGWHQKAGEPHAEVRAIASVKDKSLL 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
             +T YV+LEPC+HYG++PPCA  II   I RVV+   DP  +V+GRG++ L   G  + 
Sbjct: 61  AESTLYVSLEPCNHYGKTPPCADLIITHRIPRVVIGTTDPFAKVAGRGIEKLRDAGCEVT 120

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG---SVPITGFISKNQV 183
             +ME E +     + T   +KR +I LK A + D  I  A       V IT   ++ +V
Sbjct: 121 VGVMEKECRELNKRFFTFHEKKRPYIFLKWAETADGFIAPAHKDTLAPVWITDVYTRQEV 180

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H +R++  AILVG+GTVLAD+P L  R       +P+R+I+DPH +   + K+     L 
Sbjct: 181 HKMRSEEQAILVGVGTVLADNPSLDTR--DWYGKNPLRVIIDPHLRSPKEFKVWND--LQ 236

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P + +T  +         +  I  I       +++  +L  R + SL+VEGGA     FI
Sbjct: 237 PTLFITNKEKVSDKNYGVQTEIIGIDFTHNVPQQICDLLYQRNIQSLIVEGGAYTLQQFI 296

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSP 328
           N+ L D + +Y+S++  G  G+ +P
Sbjct: 297 NAGLYDEMRIYKSEVSFG-KGVKAP 320


>gi|62260407|gb|AAX77904.1| unknown protein [synthetic construct]
          Length = 390

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 108/325 (33%), Positives = 162/325 (49%), Gaps = 5/325 (1%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           + + + D  +M  AL  +       S NP V C+IVK+G +I  G     G  HAEV AL
Sbjct: 25  LEMKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHAL 84

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +A ++A+GATAYVTLEPC H GR+PPC   II+ GI++V++   DP+ +V+G+G++ L 
Sbjct: 85  TKAVDKAKGATAYVTLEPCCHCGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLK 144

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI +   ++E + +     +   Q  K+  +  K A+S D  I +    S  I+   +
Sbjct: 145 NAGITVEVGLLEKQAQELNKIFFHYQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSHQA 204

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
               H LR   DAIL+G  T++ D+P L  R+N  +   P R IL  H      +  +  
Sbjct: 205 FVNTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHPTRFILANHLTTINHNWRVLD 264

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGG 295
              A  I V       +A    +  I             L  LL  +   G+TSLLVEGG
Sbjct: 265 QRHAKTIFVCSKISARVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGKIGITSLLVEGG 324

Query: 296 AAVAHSFINSRLVDSIILYRSQIVI 320
               +SFIN +LV+    Y + ++I
Sbjct: 325 NKTLNSFINQKLVNEFYTYLAPVII 349


>gi|328675280|gb|AEB27955.1| Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Francisella cf. novicida 3523]
          Length = 355

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 105/323 (32%), Positives = 161/323 (49%), Gaps = 5/323 (1%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + D  +M  AL  +       S NP V C+IVK+G +I  G     G  HAEV AL +
Sbjct: 1   MKNIDKYYMQQALSLANRGRLTVSPNPMVGCIIVKNGTIISEGWHETVGKAHAEVHALTK 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
            G++A+GAT YVTLEPC H+GR+PPC   +I+ GI++VV+   DP+ +V+G+G++ L   
Sbjct: 61  VGDKAKGATVYVTLEPCCHHGRTPPCTDTLIKAGIKKVVIATLDPNPKVAGKGVKKLKDA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E + +     +   Q  K+  +  K A+S D  + +    S  I+   +  
Sbjct: 121 GITVEVGLLEKQAQELNKIFFHYQKTKKPFVYAKWAMSLDGKVAVNNDDSKKISSHQAFI 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
             H LR   DAIL+G  T+  D+P L  R+N  +   P R IL  H      +  +    
Sbjct: 181 NTHQLRNICDAILIGKQTLTDDNPSLDVRININKIKHPTRFILSNHLTTINHNWQVLDQS 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297
            A  I +       +A    +  I             L  LL  +   G+TSLLVEGG+ 
Sbjct: 241 HAKTIFICSKISAQIATKLNQLGIEYWLLPQSQNQVCLNTLLEKMGNIGITSLLVEGGSK 300

Query: 298 VAHSFINSRLVDSIILYRSQIVI 320
             +SFIN +LV+    Y + ++I
Sbjct: 301 TLNSFINQKLVNEFYTYLAPVII 323


>gi|126727883|ref|ZP_01743711.1| riboflavin biosynthesis protein RibD [Rhodobacterales bacterium
           HTCC2150]
 gi|126702824|gb|EBA01929.1| riboflavin biosynthesis protein RibD [Rhodobacterales bacterium
           HTCC2150]
          Length = 364

 Score =  312 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 123/360 (34%), Positives = 189/360 (52%), Gaps = 13/360 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D R+M  A+      +G T  NP+V C+IVKDG V+ R  TA GG PHAE QAL+  G
Sbjct: 4   ATDERWMRLAISLGAQRLGQTWPNPAVGCVIVKDGRVLARAATAPGGRPHAETQALD--G 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
             A+G+T YV+LEPC+H G++PPCAQ +I+  + RVV  + DPD RV G+G   LS  GI
Sbjct: 62  INAKGSTVYVSLEPCAHTGKTPPCAQALIDARVARVVYGMRDPDCRVDGKGTSMLSAAGI 121

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++E +       ++T   + R  +TLK+A S D  I  A   S  ITG  ++  V
Sbjct: 122 AVTGPVLEKQALAANQGFITAITKGRPALTLKLATSFDGRIATASGQSQWITGPNARRAV 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H++RA  DAI+VG GT  ADDP LT R+ G+  H P+R+I      + +D  ++     A
Sbjct: 182 HMMRANHDAIMVGAGTARADDPTLTQRVGGI-AHQPIRVICTSDLNIPMDGALVGAIKHA 240

Query: 244 PVIIVTENDDPVLAL-AFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAV 298
           P+ ++   D    A  A+ +K   +I         D+   +  L  +G+T +  EGG  +
Sbjct: 241 PLWLIHGQDAKASARDAWLQKGAKLIQVPSSPNGLDMTVAMQKLCEKGITRVFCEGGGQL 300

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           A   + ++LVD ++ + + + +G  G        L+     + F        G D+   +
Sbjct: 301 AAGLLKAKLVDRLVGFTAGMALGGDGRACVGALNLDAIDETQAFQLENLREIGGDILHIW 360


>gi|56708681|ref|YP_170577.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110671153|ref|YP_667710.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp.
           tularensis FSC198]
 gi|134302741|ref|YP_001122709.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|224457890|ref|ZP_03666363.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254371312|ref|ZP_04987314.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875556|ref|ZP_05248266.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56605173|emb|CAG46304.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321486|emb|CAL09687.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp.
           tularensis FSC198]
 gi|134050518|gb|ABO47589.1| Riboflavin biosynthesis protein RibD [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|151569552|gb|EDN35206.1| hypothetical protein FTBG_01094 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841555|gb|EET19991.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159932|gb|ADA79323.1| Riboflavin biosynthesis protein RibD [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 355

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 108/323 (33%), Positives = 161/323 (49%), Gaps = 5/323 (1%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + D  +M  AL  +       S NP V C+IVK+G +I  G     G  HAEV AL +
Sbjct: 1   MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALTK 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A ++A+GATAYVTLEPC H GR+PPC   II+ GI++V++   DP+ +V+G+G++ L   
Sbjct: 61  AVDKAKGATAYVTLEPCCHCGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E + +     +   Q  K+  +  K A+S D  I +    S  I+   +  
Sbjct: 121 GITVEVGLLEKQAQELNKIFFHYQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSHQAFV 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
             H LR   DAIL+G  T++ D+P L  R+N  +   P R IL  H      +  +    
Sbjct: 181 NTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHPTRFILANHLTTINHNWRVLDQR 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297
            A  I V       +A    +  I             L  LL  +   G+TSLLVEGG  
Sbjct: 241 HAKTIFVCSKISARVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGKIGITSLLVEGGNK 300

Query: 298 VAHSFINSRLVDSIILYRSQIVI 320
             +SFIN +LV+    Y + ++I
Sbjct: 301 TLNSFINQKLVNEFYTYLAPVII 323


>gi|330996373|ref|ZP_08320256.1| riboflavin biosynthesis protein RibD [Paraprevotella xylaniphila
           YIT 11841]
 gi|329573231|gb|EGG54845.1| riboflavin biosynthesis protein RibD [Paraprevotella xylaniphila
           YIT 11841]
          Length = 358

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 116/334 (34%), Positives = 172/334 (51%), Gaps = 16/334 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D ++MS  ++ +R      + NP V  +IV DG +IG G     G PHAEV A+   G
Sbjct: 2   TTDEKYMSRCIQLARNGFYGAAPNPMVGAVIVHDGKIIGEGYHVRCGGPHAEVNAIRSVG 61

Query: 65  --EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
             E  + +T YV+LEPCSHYG++PPCA  I+E GI RVVV   DP  +V+GRG++ L + 
Sbjct: 62  NPELLKESTIYVSLEPCSHYGKTPPCADLIVEKGIPRVVVGCMDPFAKVAGRGIRKLQEA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP-----ITG 176
           GI +   ++E+E       ++T    +R +ITLK A S D  +               + 
Sbjct: 122 GIEVTVGVLEAECLALNRRFMTFHTHRRPYITLKWAESADGFMDGLRTDYEKEKPYAFST 181

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
             ++  VH  RA   AILVG  T LAD+P L  RL      SP+R+++D +  L     +
Sbjct: 182 PYTRMLVHRCRAGHQAILVGRQTALADNPLLNLRL--WPGKSPLRLVVDRNGSLPKHLAL 239

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD-CRD-LKKLLTILVGRGVTSLLVEG 294
                   V +   +   V  L   +  +  +  D  RD L ++L  L    V SLLVEG
Sbjct: 240 FNDGAETRVYL---DALSVHPLYGEQAGVTCVRLDFSRDILPQVLDDLYHLSVQSLLVEG 296

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
           G  +  SFI++ L D I + +S + + + G+PSP
Sbjct: 297 GRRLLESFISAGLWDEIRVEQSPVWL-KEGVPSP 329


>gi|320354106|ref|YP_004195445.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Desulfobulbus propionicus DSM 2032]
 gi|320122608|gb|ADW18154.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Desulfobulbus propionicus DSM 2032]
          Length = 368

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 123/365 (33%), Positives = 192/365 (52%), Gaps = 13/365 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M  AL  +R  +G TS NP+V  ++VKDG V+GRG     G PHAEV AL +AG +A
Sbjct: 6   EWYMELALAEARKGLGRTSPNPAVGAVVVKDGKVVGRGYHHRAGTPHAEVHALADAGPQA 65

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           RGAT YVTLEPC+H GR+PPC + I+  GI  VV+ + DP+ RV+G G  +L Q+G+ +V
Sbjct: 66  RGATIYVTLEPCNHTGRTPPCTEAILAAGIAMVVIGMADPNPRVAGGGAAYLRQRGLEVV 125

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++E   +   + ++         + +K  +S D  I         +TG  S   VH L
Sbjct: 126 SGVLEQPCRALNYPFIKHSTTGLPWVMMKAGLSLDGKITFRSRQGAALTGEESWRFVHRL 185

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           R Q+DAIL+G+ T + DDP LT RL G+ +   P+R++LD   +L   ++++     A  
Sbjct: 186 RNQTDAILIGVETAIIDDPSLTTRLEGVADTRDPVRVVLDSCLRLPPQARMLHQRSTAET 245

Query: 246 IIVT-ENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
            +V              +    ++          DL  +L +L  R +TS+LVEGGA + 
Sbjct: 246 WVVCGSEASSDREEQLVRAGARVLRLALGADGRVDLPAMLRLLGARNLTSVLVEGGAGIH 305

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
            +    RLVD ++L+ +  ++G+ G P  +    L +     R     +DV L+ +G + 
Sbjct: 306 GAMYGQRLVDELLLFYAPFIVGDQGTP-LVSGYSLARRDQAPRL----ADVALQPLGNDF 360

Query: 360 CLQEL 364
             + L
Sbjct: 361 LFRAL 365


>gi|331005895|ref|ZP_08329246.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [gamma
           proteobacterium IMCC1989]
 gi|330420291|gb|EGG94606.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [gamma
           proteobacterium IMCC1989]
          Length = 397

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 117/393 (29%), Positives = 186/393 (47%), Gaps = 40/393 (10%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S+ D RFMS A++ +      T  NP V C++VK+G VI  G     G  HAE+ AL
Sbjct: 1   MTFSADDHRFMSLAIQLAEKGRYTTRPNPCVGCVLVKNGQVISEGWHYRAGEAHAEIHAL 60

Query: 61  EEAG--EEARGATAYVTLEPCSHYGRSPPCAQFI---IECGIRRVVVCVDDPDVRVSGRG 115
           ++     +A   TAYVTLEPCSH GR+  CA  +      GI RVV  ++DP+  V+G+G
Sbjct: 61  QQLPIEVKAENITAYVTLEPCSHQGRTGSCAMALADRTNTGIIRVVYGMEDPNPLVAGKG 120

Query: 116 LQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           L  L + G +V+  +ME +       +  R   +R  +  KIA S D    MA   S  I
Sbjct: 121 LAILRESGCVVEGPLMEQQAAALNQGFFRRMQSQRPWVMAKIATSIDGRTAMASGESQWI 180

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--------EHSPMRIILDP 226
           T   ++  V  LRAQS  I+ GI ++L D+  L+ R             +H P+R++LD 
Sbjct: 181 TSAPARRDVQRLRAQSCGIISGIDSILHDNSRLSVRREDSDLANIDDILQHPPLRVLLDT 240

Query: 227 HFKL----SLDSKIIKTALLAPVIIVTE------------------NDDPVLALAFRKKN 264
           H ++    +L + I   +  A V++ T                    D  V++   + + 
Sbjct: 241 HLRIADDDNLSANIFDPSSAAQVLVFTSTAVTDSKMEKVLSLNDSVGDVSVVSPMIKVEQ 300

Query: 265 INIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           +         L+++LT+L  R    ++LVE GA +   FI++ LVD +I+Y++ +++G  
Sbjct: 301 VATTETGHLCLEQVLTVLATRYECNTVLVETGATLLGGFIDAGLVDELIIYQAPVLLGSD 360

Query: 324 GIP---SPLEEGYLEKNFMCVRRDYFGSDVCLE 353
                   L     +       R   G D+ ++
Sbjct: 361 ARALANVSLTRMQEKIALTITDRRMVGDDLRIK 393


>gi|58584287|ref|YP_197860.1| pyrimidine deaminase and reductase [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
 gi|58418603|gb|AAW70618.1| Pyrimidine deaminase and reductase [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
          Length = 378

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 137/374 (36%), Positives = 188/374 (50%), Gaps = 26/374 (6%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  FMS AL  +   +G  + NP+V C+IVKDG+V+G G T  GG PHAEV AL+ A  
Sbjct: 2   IDNHFMSIALSLAEKTLGNVAPNPAVGCIIVKDGVVVGEGHTGIGGRPHAEVAALQSAKG 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
              GAT YVTLEPC HYG + PC   II  GI++VVV   DPD RVSG G++ L + GI 
Sbjct: 62  STHGATMYVTLEPCCHYGVTEPCIIEIIRSGIKKVVVAAIDPDKRVSGGGIKALEEAGIT 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M+ E +     + T +   R  I  KIA + D  I      S  IT   ++N VH
Sbjct: 122 VEQGIMQEEAEKLNIGFFTTRKLHRPFIACKIATTLDGKIATFKGDSKWITSGSTRNWVH 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LRA+ DAI++G  T++ DDP LTCRL GL+  SP+R+I+D   KL     ++KTA    
Sbjct: 182 ELRAKYDAIMIGSNTLINDDPLLTCRLPGLESRSPIRLIIDSQEKLKEKHNVVKTADKVT 241

Query: 245 VI-----------------IVTENDDPVLALAFR-KKNINIIYCDCRDLKKL-LTILVGR 285
                              IV  ND P+ A       N      D   LK + L ++   
Sbjct: 242 TWVIINKKIEKKIKNINYLIVNSNDKPIPASHTGMTSNQGEYSTDKVCLKDMALKLVSEI 301

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMC 340
           G+T LLVEGG  +    +   L+D +I+ RS  ++G   IP  +    ++       F  
Sbjct: 302 GITRLLVEGGRVLTTELLKHDLIDRLIICRSGKILGNDAIP-FIGNLEIQSINNCYQFKK 360

Query: 341 VRRDYFGSDVCLEY 354
                F  D+   +
Sbjct: 361 AEIIDFDEDIVEVW 374


>gi|187930956|ref|YP_001890940.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187711865|gb|ACD30162.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 355

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 108/323 (33%), Positives = 161/323 (49%), Gaps = 5/323 (1%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + D  +M  AL  +       S NP V C+IVK+G +I  G     G  HAEV AL +
Sbjct: 1   MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALTK 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A ++A+GATAYVTLEPC H GR+PPC   II+ GI++V++   DP+ +V+G+G++ L   
Sbjct: 61  AVDKAKGATAYVTLEPCCHCGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E + +     +   Q  K+  +  K A+S D  I +    S  I+   +  
Sbjct: 121 GITVEVGLLEKQAQELNKIFFHYQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSHQAFV 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
             H LR   DAIL+G  T++ D+P L  R+N  +   P R IL  H      +  +    
Sbjct: 181 NTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHPTRFILANHLTTINHNWQVLDQR 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297
            A  I V       +A    +  I             L  LL  +   G+TSLLVEGG  
Sbjct: 241 HAKTIFVCSKISARVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGKIGITSLLVEGGNK 300

Query: 298 VAHSFINSRLVDSIILYRSQIVI 320
             +SFIN +LV+    Y + ++I
Sbjct: 301 TLNSFINQKLVNEFYTYLAPVII 323


>gi|121605806|ref|YP_983135.1| riboflavin biosynthesis protein RibD [Polaromonas naphthalenivorans
           CJ2]
 gi|120594775|gb|ABM38214.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Polaromonas
           naphthalenivorans CJ2]
          Length = 370

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 115/363 (31%), Positives = 175/363 (48%), Gaps = 14/363 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M +   D   M  A+  +   + +TS NP V C++   G V+G+G T   G PHAE+ AL
Sbjct: 1   MELCVPDTEMMPRAVALALAAMRITSPNPRVGCVLTSSGDVLGQGHTQAAGHPHAEIMAL 60

Query: 61  EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            +A   G    GATAYVTLEPCSH+GR+ PC   +I  GI+++V  + DP+  VSG+G +
Sbjct: 61  RDAAAQGHSVVGATAYVTLEPCSHHGRTGPCCDALIAAGIKKIVASIADPNPLVSGQGFE 120

Query: 118 WLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
            L   GI V+     +E +     + +R + K   + +K+A S D    +A   S  IT 
Sbjct: 121 RLRAAGIEVEVGPGAAESRELNIGFFSRMIRKTPWVRMKMAASLDGTTALANGQSQWITS 180

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
             ++   H  RA++ A+L GIGTVL D+P L  RL       P  I++D   +  LD+ +
Sbjct: 181 AEARADGHAWRARACAVLTGIGTVLQDNPRLDVRLVS-TPRQPHLIVVDSRLETPLDAHL 239

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLV 292
                   + I     +     A   K   +IY        DL  ++  L  R +  L V
Sbjct: 240 FIAGRA--LYIYAAVQNEAKKQALEAKGATVIYLPDANGKVDLTAMVQDLGRREINELHV 297

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIG-EGGIPS--PLEEGYLEKNFMCVRRDYFGSD 349
           E G+ +  S I + LVD  +LY +  ++G   G+ S  PL+             D  G+D
Sbjct: 298 EAGSKLNGSLIRAGLVDEFLLYLAPKLLGPGQGMASFGPLQALSDAVELQFQSTDRVGAD 357

Query: 350 VCL 352
           + +
Sbjct: 358 LRI 360


>gi|221135084|ref|ZP_03561387.1| riboflavin biosynthesis protein RibD [Glaciecola sp. HTCC2999]
          Length = 381

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 119/379 (31%), Positives = 182/379 (48%), Gaps = 42/379 (11%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             S+FD   M+ ALR ++  +   + NP V C+I  DG +IG G     G  HAEV AL 
Sbjct: 4   TFSAFDYAMMARALRLAKQGIYTAAPNPMVGCVITLDGEIIGEGHHQQAGTAHAEVNALW 63

Query: 62  EAGE----------EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +  E          + + ATAYVTLEPCSH GR+ PCA  +I+  I RVV+ + DP  +V
Sbjct: 64  QVNELIAQGKLVATQLKEATAYVTLEPCSHTGRTGPCADALIDAYIGRVVIAMQDPYSQV 123

Query: 112 SGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG 170
           SGRG+  L +  I +   ++ +E       +L+    +R  +T K+A S D  I +    
Sbjct: 124 SGRGIAKLQRANIQVEVGLLAAESNALNRHFLSLVERQRPFVTAKLATSLDGKIALDNGV 183

Query: 171 SVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH------------- 217
           S  ITG  ++  V   RAQ   IL G  TV+ADDP+L  RL  L E+             
Sbjct: 184 SQWITGPEARQDVQAHRAQHMCILTGSQTVIADDPQLNVRLAELPENVQQTLAANPLAQY 243

Query: 218 -SPMRIILDPHFKLSLDSKIIKTALL-APVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275
             P+R I+D    +S   +I++ A   AP  + T +            NI +      DL
Sbjct: 244 TQPLRAIIDSQRLISEQYQIVRDANTQAPTHVFTPD------------NIPLNGNGKCDL 291

Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEE 331
             +L  L  +G+ S+ VE GA +  + +N+RL+D +I+Y++ +++G     +     L +
Sbjct: 292 SAVLDALGQQGINSVWVEAGAGLVGAMLNARLLDELIIYQAPLLLGADAKDAINIAKLTQ 351

Query: 332 GYLEKNFMCVRRDYFGSDV 350
                    +     G D+
Sbjct: 352 MDQRIELDIIDTRKVGQDI 370


>gi|99081975|ref|YP_614129.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Ruegeria sp. TM1040]
 gi|99038255|gb|ABF64867.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Ruegeria sp. TM1040]
          Length = 358

 Score =  312 bits (799), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 128/357 (35%), Positives = 187/357 (52%), Gaps = 11/357 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL   R   G T  NP+V C+IV+ G V+GRG T  GG PHAE  AL +AG  ARGA
Sbjct: 1   MGLALSLGRRGQGRTWPNPAVGCVIVQKGRVVGRGWTQPGGRPHAEPMALAQAGAAARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYV+LEPC+H+G++PPCAQ +IE G+ RVV  ++D D RVSG+G + L   GI +   +
Sbjct: 61  TAYVSLEPCAHHGKTPPCAQALIEAGVARVVAAIEDSDPRVSGQGFEMLRAAGISVTTGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
              E       +  +  + R  +TLK+A S D  I      S  ITG  ++  VH +RA+
Sbjct: 121 RAEEAGFDHEGFFLKTEQGRPFVTLKLAASFDGRIATGSGQSQWITGPEARRVVHAMRAR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DA++VG GT  ADDP LT R  G+ +  P R+++  H  L L SK+ ++A   P+ +  
Sbjct: 181 HDAVMVGAGTARADDPSLTVRDLGIDQ-QPARVVVSRHLDLPLISKLARSAAEVPLYLCH 239

Query: 250 -ENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
               D     A+     +++ C+      D   +L  L   G+T +  EGG A+A S + 
Sbjct: 240 GTGADTERLRAWDGLGAHLLPCNALGTQLDPHDVLQQLGSVGLTRVFCEGGGALAASLLA 299

Query: 305 SRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
             LVD ++ + + + IG  G+PS     +        F        G+D+   +   
Sbjct: 300 HDLVDELVGFSAGLTIGAEGLPSIGALGIGHLSEAPRFDLHETRPIGADILHRWRRP 356


>gi|299530728|ref|ZP_07044143.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni S44]
 gi|298721244|gb|EFI62186.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni S44]
          Length = 362

 Score =  312 bits (799), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 106/353 (30%), Positives = 166/353 (47%), Gaps = 12/353 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
           M+ AL  +   + L+S NP V C+IV     +IG+G T   G PHAEV AL +A   G +
Sbjct: 1   MNKALEQAAQALFLSSPNPRVGCVIVDASDRIIGQGFTQQAGGPHAEVMALRDASAKGND 60

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            RGATAYVTLEPCSH+GR+ PC   +I  GI +VV  + DP+ +V+G+G + L   G+ +
Sbjct: 61  VRGATAYVTLEPCSHHGRTGPCCDALIAAGIGKVVGALTDPNPQVAGQGFERLRAAGVDV 120

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
                 +E +     + +R +     + +K A S D +  +    S  IT   ++   H 
Sbjct: 121 EIGPGGAESRELNIGFFSRMIRGTPWVRMKAASSLDGVTALHNGQSQWITSAAARADGHA 180

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            RA++  IL GIGTVL D+P +  R        P   ++D    + LD+ ++K      +
Sbjct: 181 WRARACTILTGIGTVLEDNPRMNVRDVD-TPRQPRIAVVDSKLDIPLDAHVLKAPSGCLI 239

Query: 246 IIVTENDDPVLALAFRKKNINIIY--CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
              +     +  L      +  +       DL  +L  L  RG   L VE G  +  S I
Sbjct: 240 YTCSTKQSRIEELQALGATVIAMPNAAGKVDLAAMLRDLAARGTNELHVEAGFKLNGSLI 299

Query: 304 NSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCL 352
              LVD ++ Y++  ++G G +      PL+        +       G D+ +
Sbjct: 300 REGLVDELLFYQAPKLLGTGAMGIANFGPLDSLDQGLPLVFHDVARLGPDLRI 352


>gi|254372095|ref|ZP_04987588.1| hypothetical protein FTCG_01236 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151569826|gb|EDN35480.1| hypothetical protein FTCG_01236 [Francisella novicida GA99-3549]
          Length = 355

 Score =  312 bits (799), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 108/323 (33%), Positives = 162/323 (50%), Gaps = 5/323 (1%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + D  +M  AL  +       S NP V C+IVK+G +I  G     G  HAEV AL +
Sbjct: 1   MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALIK 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
            G++A+GATAYVTLEPC H+GR+PPC   II+ GI++V++   DP+ +V+G+G++ L   
Sbjct: 61  VGDKAKGATAYVTLEPCCHHGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E + +     +   Q  K+  +  K A+S D  I +    S  I+   +  
Sbjct: 121 GITVEVGLLEKQAQELNKIFFHYQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSHQAFV 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
             H LR   DAIL+G  T++ D+P L  R+N  +   P R IL  H      +  +    
Sbjct: 181 NTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHPTRFILANHMTTIDHNWRVLDQR 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297
            A  I V       +A    +  I             L  LL  +   G+TSLLVEGG  
Sbjct: 241 HAKTIFVCSKISAQVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGNIGITSLLVEGGNK 300

Query: 298 VAHSFINSRLVDSIILYRSQIVI 320
             +SFIN +LV+    Y + ++I
Sbjct: 301 TLNSFINQKLVNEFYTYLAPVII 323


>gi|330443905|ref|YP_004376891.1| riboflavin biosynthesis protein RibD [Chlamydophila pecorum E58]
 gi|328807015|gb|AEB41188.1| riboflavin biosynthesis protein RibD [Chlamydophila pecorum E58]
          Length = 372

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 107/362 (29%), Positives = 175/362 (48%), Gaps = 11/362 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S     FM  A+         T  NP V C++VK+G ++  G   Y G PHAE  A+ +
Sbjct: 4   FSEQQQLFMRRAIEIGERGRITTPPNPWVGCVLVKNGKILSEGYHEYPGGPHAEEIAIRK 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A     GA  Y++LEPCSHYG+ PPC   +I+  +  V + + DPD RVSG+G++ L   
Sbjct: 64  AHVSLEGAQVYLSLEPCSHYGKQPPCTDLLIKHRVAEVFIALKDPDCRVSGKGIESLKNV 123

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   + E+  +  L  YL ++      + LK A S D  +      S  IT   +++
Sbjct: 124 GIRVHVGLEEARARKSLQPYLYQRSSCSPWVVLKSAASIDGQVADRNSQSQWITCPEARH 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
            V  +RA S A++VG GTV+AD+P+LT R     L    P+RI+LD   ++  +S++   
Sbjct: 184 DVGFIRACSQAVIVGAGTVIADNPKLTARRASGELYARQPLRIVLDSSGRVPKESQVFHL 243

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGG 295
                + + T+              + I          DL +++ +L  +    +LVEGG
Sbjct: 244 GGEV-LYVTTKRCPSQHLQYLEALGVEIACVKASSSGVDLHEVMRLLANKHFLQVLVEGG 302

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG---YLEKNFMCVRRDYFGSDVCL 352
           A V   F+   L ++IILY    ++G+   P   E G   +  +  + +  D+ G+ + +
Sbjct: 303 ATVHTEFLKHHLANAIILYYGPKILGDQKKPLFKELGDCLHTAQAVLPLSADFVGNSLKV 362

Query: 353 EY 354
            +
Sbjct: 363 FW 364


>gi|33598380|ref|NP_886023.1| putative riboflavin-specific deaminase [Bordetella parapertussis
           12822]
 gi|33574509|emb|CAE39154.1| putative riboflavin-specific deaminase [Bordetella parapertussis]
          Length = 386

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 119/367 (32%), Positives = 181/367 (49%), Gaps = 17/367 (4%)

Query: 1   MPVSS--FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
           M  S+   D  +M  AL  +R  +  T+ NP V C+IV+DG V+G G T   G PHAEV 
Sbjct: 1   MNTSTPTDDVSWMRRALALARSVMYSTAPNPRVGCVIVRDGQVLGEGATQPPGGPHAEVC 60

Query: 59  ALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           AL EA   G    GAT YVTLEPCSH+GR+PPC   +      RVVV + DP+ RV+G+G
Sbjct: 61  ALREAAARGASLAGATVYVTLEPCSHFGRTPPCVDALAAAAPARVVVAMGDPNPRVNGQG 120

Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           L  L   GI + + +   E       +  R       + LK+A S D    +    S  +
Sbjct: 121 LARLRAAGIAVTEDVCRDEALELNAGFAARMSRGLPWVWLKLAASLDGRSALHNGVSQWM 180

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           TG  ++   H  RA+S  +L G+GTVL DDP+L  R      H P + ++D  F++  D+
Sbjct: 181 TGEAARADGHHWRARSGVVLTGMGTVLKDDPQLNAR-AVQTSHPPRKAVIDGRFEIPEDA 239

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTS 289
           ++      A V++ T   D   A     +N+ +I       D  DL  ++  L  + +  
Sbjct: 240 RLFDDG--AQVLVFTARSDAAKARRMADRNVRVIELPGVRPDRVDLPAVMRWLASQEINE 297

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG--IPSPLEEGYL-EKNFMCVRRDYF 346
           + VE GA ++ + +    VD +++Y + +++G+    +  PL E     + F        
Sbjct: 298 VHVEAGAGLSGALLAEDCVDELLVYLAPVLLGDAAGMVRLPLLEHLDGARRFEFAELAPV 357

Query: 347 GSDVCLE 353
           G+DV L 
Sbjct: 358 GTDVRLR 364


>gi|332530146|ref|ZP_08406095.1| riboflavin biosynthesis protein RibD [Hylemonella gracilis ATCC
           19624]
 gi|332040416|gb|EGI76793.1| riboflavin biosynthesis protein RibD [Hylemonella gracilis ATCC
           19624]
          Length = 377

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 107/362 (29%), Positives = 168/362 (46%), Gaps = 21/362 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
           M  AL  +   + LTS NP V C+IV  +G ++G G T   G PHAEV AL +A   G +
Sbjct: 7   MQRALALAEQGLYLTSPNPRVGCVIVGVEGQLLGEGHTQRAGGPHAEVMALRDAQARGHD 66

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            RGATAYVTLEPC+H GR+ PC + +   GI +VV  ++DP+ +V+G+G   L   G++V
Sbjct: 67  VRGATAYVTLEPCAHQGRTGPCCEALAAAGIGKVVASLEDPNPKVAGQGFARLRAAGVVV 126

Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +     ++ +     + +R       + +KIA S D    +    S  IT   ++   H 
Sbjct: 127 EVGPGAAQSRELNLGFFSRMQRGLPWVRMKIAASLDGQTALQNGLSQWITSPEARADGHA 186

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK------- 238
            RA++ AIL G+GTV  D+P L  RL       P  +++D   +    + + +       
Sbjct: 187 WRARACAILTGMGTVREDNPRLDVRLVE-TPRQPRLVVVDSRLETPPTAALFEPHRDTAP 245

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILV-GRGVTSLLVE 293
                PV+I     D     A + +   +++        DL  LL  L   R +  L VE
Sbjct: 246 GREAQPVLIYGAVTDAARQSALQARGATVVHLPNAQGKVDLAALLRDLATQREINELHVE 305

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDV 350
            G  +  S +   LVD +++Y +  ++G G   +   PL                 G D+
Sbjct: 306 AGHQLNGSLLREGLVDELLIYLAPKLLGAGRGMAQIGPLNTLTDAVTLDYREITQVGPDL 365

Query: 351 CL 352
            +
Sbjct: 366 RV 367


>gi|298386833|ref|ZP_06996388.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 1_1_14]
 gi|298260507|gb|EFI03376.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 1_1_14]
          Length = 345

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 106/349 (30%), Positives = 171/349 (48%), Gaps = 18/349 (5%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
            ++M   +  ++  +   + NP V  +IV DG++IG G     G  HAEV A+    ++ 
Sbjct: 4   EKYMRRCIELAKNGLCNVAPNPMVGAVIVCDGLIIGEGYHIRCGEAHAEVNAIRSVKDKS 63

Query: 67  -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
               +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP  +V+GRG+Q L   G  
Sbjct: 64  LLSRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSQVAGRGIQKLRDAGRE 123

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQ 182
           +   ++E E +  +  ++T     R  ITLK A S D+ I +      P+  +  ++   
Sbjct: 124 VTIGVLEKECRYLIRRFITFNTLHRPFITLKWAESADHFIDVERTDGNPVVLSSPLTSML 183

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  RA++DAI+VG  T L D+P LT R       +P+RI+LD    L    ++      
Sbjct: 184 VHKKRAETDAIMVGRRTALLDNPSLTVR--NWYGRNPVRIVLDRALSLPHSLRLFDGE-- 239

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            P I+ T    P      +      I      L +++ +L  + + SLLVEGG+ +  SF
Sbjct: 240 VPTIVFTAEKHPDK----KNVTYRTIEFTQDILPQIMKVLYQQKIQSLLVEGGSQLLQSF 295

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           I++ L D + + +    +   G+ +P     +  NF      +F   + 
Sbjct: 296 IDAELWDEVYIEKCPCKL-NSGVKAP----EISDNFSYSTEKHFDRQIW 339


>gi|254474397|ref|ZP_05087783.1| riboflavin biosynthesis protein RibD [Ruegeria sp. R11]
 gi|214028640|gb|EEB69475.1| riboflavin biosynthesis protein RibD [Ruegeria sp. R11]
          Length = 358

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 132/354 (37%), Positives = 188/354 (53%), Gaps = 11/354 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           MS AL   R   G    NP+V C+IVKDG ++GRG T  GG PHAE +AL  AG  ARGA
Sbjct: 1   MSLALSLGRRGQGQCWPNPAVGCVIVKDGRIVGRGWTQPGGRPHAEPEALARAGALARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYV+LEPC+H+G++PPCAQ +I+ G++RVV  ++D D RVSG G   L   GI +   +
Sbjct: 61  TAYVSLEPCAHFGKTPPCAQALIDAGVKRVVAAIEDSDPRVSGHGFAMLRDAGIEVTTGI 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
              E       +  +  + R  +TLK+A S D  I  A   S  ITG  ++  VH +RA+
Sbjct: 121 CADEAARDHAGFFLKTEQGRPFVTLKLANSFDGRIATATGESKWITGPDARRAVHAMRAR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DA++VG GT  ADDP LT R  G+    P+R+++  H  L L  ++ +TA   P+ I  
Sbjct: 181 HDAVMVGGGTARADDPSLTVRDMGIS-RQPVRVVISRHLDLPLMGQLARTAKDVPLWICH 239

Query: 250 -ENDDPVLALAFRKKNINIIYCDCRDL----KKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
               D     A+      +I+C    L      +L  L   G+T +  EGG+ +A S + 
Sbjct: 240 GSGADADRLRAWEGVGATLIHCASDGLQLEAADVLQQLGQAGLTRVFCEGGSGLAASLLK 299

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDVCLEY 354
             LVD +I + + +VIG GG+ S      E       F  + +   G D+   +
Sbjct: 300 QDLVDELIGFTAGVVIGGGGLSSIGSLGHEALADAPRFDLIEQTQIGPDLLHRW 353


>gi|253571299|ref|ZP_04848706.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 1_1_6]
 gi|251839252|gb|EES67336.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 1_1_6]
          Length = 345

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 106/349 (30%), Positives = 171/349 (48%), Gaps = 18/349 (5%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
            ++M   +  ++  +   + NP V  +IV DG++IG G     G  HAEV A+    ++ 
Sbjct: 4   EKYMRRCIELAKNGLCNVAPNPMVGAVIVCDGLIIGEGYHIRCGEAHAEVNAIRSVKDKS 63

Query: 67  -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
               +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP  +V+GRG+Q L   G  
Sbjct: 64  LLSRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSQVAGRGIQKLRDAGRE 123

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQ 182
           +   ++E E +  +  ++T     R  ITLK A S D+ I +      P+  +  ++   
Sbjct: 124 VTVGVLEKECRYLIRRFITFNTLHRPFITLKWAESADHFIDVERTDGNPVVLSSPLTSML 183

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  RA++DAI+VG  T L D+P LT R       +P+RI+LD    L    ++      
Sbjct: 184 VHKKRAETDAIMVGRRTALLDNPSLTVR--NWYGRNPVRIVLDRALSLPHSLRLFDGE-- 239

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            P I+ T    P      +      I      L +++ +L  + + SLLVEGG+ +  SF
Sbjct: 240 VPTIVFTAEKHPDK----KNVTYRTIEFTQDILPQIMKVLYQQKIQSLLVEGGSQLLQSF 295

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           I++ L D + + +    +   G+ +P     +  NF      +F   + 
Sbjct: 296 IDAELWDEVYIEKCPCKL-NSGVKAP----EISDNFSYSTEKHFDRQIW 339


>gi|325846504|ref|ZP_08169419.1| riboflavin biosynthesis protein RibD [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481262|gb|EGC84303.1| riboflavin biosynthesis protein RibD [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 359

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 111/356 (31%), Positives = 161/356 (45%), Gaps = 16/356 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M      ++   G T  NP V  ++VKDG +I  G     G  HAEV       E 
Sbjct: 3   DKYYMKKCFDLAKNARGKTLKNPLVGAVLVKDGKIISTGYHHEYGKVHAEVDCFNNLKEN 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GA  YV LEPCSHYG+  PC   II+  I++V++   D + +V   GL+ L +KGI +
Sbjct: 63  ADGAVLYVNLEPCSHYGKQGPCTLEIIKRNIKKVIISNIDTNPKV--DGLKVLREKGIEV 120

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E EGK     +       R  I LK A + D  I      S  I+   S+  VH 
Sbjct: 121 QTGLLEDEGKKLNEKFFFNIKYNRPLIALKYAQTLDGKISSNTNDSKWISNEFSREYVHR 180

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS---LDSKIIKTALL 242
           LR   DAI+VG  T++ D+P L  R+       P+R+I+D + ++     D KI      
Sbjct: 181 LRNDYDAIIVGKNTLIHDNPSLNSRIE--NGIDPVRVIVDTNLEIEKNYKDYKIFNLNSD 238

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
               I T  D     L   K     +  +  DL+ L+  L    + S+LVEGG+ + + F
Sbjct: 239 KKTYIATCKDTDNPDLNLIKCK---MKNNHVDLEDLVNKLYEMNIGSILVEGGSILNYDF 295

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
           +   LVD I  + S  +IG     SP     ++K      F       F  D+ +E
Sbjct: 296 LEEGLVDKIYEFISPQIIGGFNSKSPFYGRGVDKIKDGYKFEIEDVKRFDDDIMIE 351


>gi|332881258|ref|ZP_08448908.1| riboflavin biosynthesis protein RibD [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332680634|gb|EGJ53581.1| riboflavin biosynthesis protein RibD [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 358

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 114/334 (34%), Positives = 171/334 (51%), Gaps = 16/334 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--E 62
           + D ++MS  ++ +R      + NP V  +IV DG +IG G     G PHAEV A+    
Sbjct: 2   TTDEKYMSRCIQLARNGFYGAAPNPMVGAVIVHDGKIIGEGYHVRCGGPHAEVNAIRFVR 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
             E  + +T YV+LEPCSHYG++PPCA  I+E GI RVVV   DP  +V+GRG++ L + 
Sbjct: 62  NPELLKESTIYVSLEPCSHYGKTPPCADLIVEKGIPRVVVGCMDPFAKVAGRGIRKLQES 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP-----ITG 176
           GI +   ++E+E       ++T     R +ITLK A S D  +               + 
Sbjct: 122 GIEVTVGVLEAECLALNRRFITFHTHHRPYITLKWAESADGFMDSLRTDYEKEKPYAFST 181

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
             ++  VH  RA+  AILVG  T LAD+P L  R+      SP+R+++D    L     +
Sbjct: 182 PYTRMLVHRCRAEHQAILVGRQTALADNPSLNLRM--WPGKSPLRLVIDRRGDLPGHLAL 239

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD-CRD-LKKLLTILVGRGVTSLLVEG 294
                   V +   +   VL    ++  +  +  D  RD L ++L  L    V SLLVEG
Sbjct: 240 FNDGAETRVYL---DVLSVLPPYGKQTGVTCVRLDFSRDILPQILDDLYRLSVQSLLVEG 296

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
           G  +  SFI++ L D I + +S + + + G+PSP
Sbjct: 297 GHRLLESFISAGLWDEIRVEQSPVFL-KEGVPSP 329


>gi|15644572|ref|NP_229625.1| riboflavin-specific deaminase [Thermotoga maritima MSB8]
 gi|148270243|ref|YP_001244703.1| riboflavin biosynthesis protein RibD [Thermotoga petrophila RKU-1]
 gi|281412422|ref|YP_003346501.1| riboflavin biosynthesis protein RibD [Thermotoga naphthophila
           RKU-10]
 gi|4982410|gb|AAD36891.1|AE001819_14 riboflavin-specific deaminase [Thermotoga maritima MSB8]
 gi|147735787|gb|ABQ47127.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Thermotoga petrophila RKU-1]
 gi|281373525|gb|ADA67087.1| riboflavin biosynthesis protein RibD [Thermotoga naphthophila
           RKU-10]
          Length = 348

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 121/363 (33%), Positives = 185/363 (50%), Gaps = 24/363 (6%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
             FM  A+  ++  +G  + NP V  ++VKDG +I  G   Y G PHAE  A+E A   G
Sbjct: 3   ETFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARKKG 62

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E+ RGAT  VTLEPC H+G++PPC   IIE GI+ VV+   DP+  VSG G++     GI
Sbjct: 63  EDLRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNP-VSGNGVEKFRNHGI 121

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +++ ++E E K     ++T   +KR  + LK A + D  I      S  IT  + + +V
Sbjct: 122 EVIEGVLEEEVKKLCEFFITYVTKKRPFVALKYASTLDGKIADHRGDSKWITDKL-RFKV 180

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK-TALL 242
           H +R    A+LVG GTVL D+P+LTCRL   +  +P+R+ILD      L  K+ +     
Sbjct: 181 HEMRNIYSAVLVGAGTVLKDNPQLTCRL--KEGRNPVRVILDRKG--VLSGKVFRVFEEN 236

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           A VI+ TE+++        K            ++ +L  L  R + S+LVEGG+ V   F
Sbjct: 237 ARVIVFTESEEAEYPPHVEKA------LSDCSVESILRNLYERDIDSVLVEGGSKVFSEF 290

Query: 303 INSRLVDSIILYRSQIVIGEGG--IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
           ++    D +  + S  + G+G       L +  +   F  V  ++  S+  +E      C
Sbjct: 291 LDH--ADVVFGFYSTKIFGKGLDVFSGYLSDVSVPPKFKVVNVEFSDSEFLVEMRP---C 345

Query: 361 LQE 363
            +E
Sbjct: 346 SRE 348


>gi|217969969|ref|YP_002355203.1| riboflavin biosynthesis protein RibD [Thauera sp. MZ1T]
 gi|217507296|gb|ACK54307.1| riboflavin biosynthesis protein RibD [Thauera sp. MZ1T]
          Length = 365

 Score =  311 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 120/348 (34%), Positives = 181/348 (52%), Gaps = 15/348 (4%)

Query: 15  LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYV 74
           L+ +   +  TS NP V C+IV+DG  +G G  A  G  HAEV AL +AG  ARGATAYV
Sbjct: 15  LQLAARGLDTTSPNPRVGCVIVRDGTTVGEGWHARAGEAHAEVHALRQAGAAARGATAYV 74

Query: 75  TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE- 133
           TLEPCSH+GR+PPCA  +IE G+ RV+  ++DP+  V+GRGL  L   GI     + +E 
Sbjct: 75  TLEPCSHFGRTPPCADALIEAGVARVIAAMEDPNPLVAGRGLARLRASGIAAAHGLLAEA 134

Query: 134 GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAI 193
            +     +++R    R  + LK+A + D    +    S  ITG  ++   H  RA++ AI
Sbjct: 135 AQELNIGFVSRMTRGRPWVRLKVAGTLDGKSALDNGVSQWITGPAARRDGHRWRARACAI 194

Query: 194 LVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD 253
           L GIGTV  DDP+L  R +   E  P+RI++D   ++S  ++I++     P++I T + D
Sbjct: 195 LTGIGTVREDDPQLGVR-DVPCERQPLRILVDARLEVSPQARILQGE---PILIATGSTD 250

Query: 254 PVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
                  R     I++        DL  LL +L  RG+  L VE G  +  S +    VD
Sbjct: 251 QARIDMLRAAGHEIVFVPNAAGKVDLGALLRLLGERGINELHVEAGFKLNGSLLREGCVD 310

Query: 310 SIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +++Y + +++G+       +P+ L                 G D+ L
Sbjct: 311 ELLIYLAPMLVGDAAQGLFNLPA-LTRLEGATRLDIRDLRRIGPDLRL 357


>gi|90023098|ref|YP_528925.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Saccharophagus degradans 2-40]
 gi|89952698|gb|ABD82713.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Saccharophagus degradans 2-40]
          Length = 365

 Score =  311 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 115/365 (31%), Positives = 184/365 (50%), Gaps = 14/365 (3%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQAL 60
             S  D RFM+ A++ +R     T+ NP V C++V     ++G G     G  HAEV A+
Sbjct: 3   NYSVADQRFMTRAMQLAREGTYTTTPNPRVGCVLVDAANNIVGEGYHVRAGEGHAEVNAI 62

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AG  ARG TAYVTLEPCSH G++ PC + ++  G+ RVV  ++DP+ +V+GRGL  L 
Sbjct: 63  ADAGAAARGTTAYVTLEPCSHTGKTGPCCEALVAAGVSRVVYGMEDPNPKVAGRGLDHLE 122

Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI VD  ++E +       ++ R  +    I +K+A+S D    MA   S  IT   +
Sbjct: 123 AAGIQVDGPVLEYDAYELNPGFIKRMRQGLPLIRIKMAMSLDGRTAMADGTSKWITSPRA 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           ++ V  LRA+S A++ G+ +VL DDP LT RL+      P+R+I+D   +L  D+ I+  
Sbjct: 183 RDDVQRLRARSCALITGVDSVLLDDPSLTVRLSD-DARQPLRVIVDSKLRLPKDAAILSQ 241

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGG 295
                 +I T  +       +   +  I     +D    L+ L   L  +    +LVE G
Sbjct: 242 P--GKTVIATCANVNQAQSPYG--DTEIWTLPEKDGRVSLQALARKLAQQECNEVLVETG 297

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCL 352
           A +A +F++S LVD +++Y +  ++G    P    P+ +   +           G +  +
Sbjct: 298 ATLAGAFVSSGLVDELVIYMAGKLLGSTARPLFDIPISKMSAQLPLSITDIRAIGDNWRI 357

Query: 353 EYIGK 357
             I  
Sbjct: 358 TAIPD 362


>gi|158422887|ref|YP_001524179.1| riboflavin biosynthesis protein [Azorhizobium caulinodans ORS 571]
 gi|158329776|dbj|BAF87261.1| riboflavin biosynthesis protein [Azorhizobium caulinodans ORS 571]
          Length = 384

 Score =  311 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 144/367 (39%), Positives = 202/367 (55%), Gaps = 15/367 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK----DGIVIGRGVTAYGGCPHAEVQAL 60
             D   M+ AL   +  +G T  NPSV  ++V+       ++GR  TA  G PHAE  AL
Sbjct: 17  EEDEALMAEALAVGQLGLGRTWPNPSVGAVVVRPTSAGPQILGRAGTAPAGRPHAEPLAL 76

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AG+ ARGAT YVTLEPCSH+GR+PPCA  +I  GI RVV  V+DPD RV GRG+  + 
Sbjct: 77  AQAGDAARGATLYVTLEPCSHFGRTPPCADAVIAAGITRVVAAVEDPDPRVRGRGVARMR 136

Query: 121 QKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             G+ V   + +E  +  HA +++R    R H+ LK+AVS D   G+ G     ITG  +
Sbjct: 137 AAGLWVTVGVGAERALEDHAGHISRVTRGRPHVLLKMAVSADGKAGLEGPRPAAITGEEA 196

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           + +VHL+RA +DAI+VGIGTVLADDP+LT RL G++  SP+RI+LD   +L     +++T
Sbjct: 197 RARVHLMRAHADAIMVGIGTVLADDPQLTVRLPGMEGRSPVRIVLDGDLRLPTTCGLVRT 256

Query: 240 ALLAPVIIVTENDDP-VLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVE 293
           A   PV  +   D P     A     + ++          DL  ++ +L   GVT L+VE
Sbjct: 257 AEQVPVWAIAAEDAPAEREKALVDAGVQVLRAPRAASGRLDLPAVMKLLGLLGVTRLMVE 316

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
           GG  VA + ++  LVD + + RS   +G GG+ +    PL        F  V R   G D
Sbjct: 317 GGPQVAAALLDEGLVDEVAVLRSPDALGAGGLDALAGRPLARLTEPVGFAVVERTELGRD 376

Query: 350 VCLEYIG 356
             +    
Sbjct: 377 SLMRLRR 383


>gi|217978262|ref|YP_002362409.1| riboflavin biosynthesis protein RibD [Methylocella silvestris BL2]
 gi|217503638|gb|ACK51047.1| riboflavin biosynthesis protein RibD [Methylocella silvestris BL2]
          Length = 370

 Score =  311 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 132/365 (36%), Positives = 197/365 (53%), Gaps = 12/365 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M     D RFM+AA+  +R  +G+ + NP+V  LIVKDG+V+ RG T  GG PHAE +AL
Sbjct: 1   MSQVDADERFMAAAIALARRGLGVCAPNPAVGALIVKDGVVLARGWTQAGGRPHAEAEAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AG+++RG+T YVTLEPCSH+G++PPCA+ +I  GI RV   ++DPD RV+GRG + L 
Sbjct: 61  RQAGDKSRGSTLYVTLEPCSHHGKTPPCAEAVIASGIARVASAIEDPDPRVAGRGHELLR 120

Query: 121 QKG-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV-PITGFI 178
             G I+   +           ++ R  + R  ITLK+A++ D  +          ITG  
Sbjct: 121 AAGLIVRTGVCAQAALRANLGHVLRVTQNRPLITLKLAMTADGFVAGGPNEPRLSITGEA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           +   VHL+RA  DAIL+G+GT LADDP LT RL GL++  P+RI+LD   ++S  S+++ 
Sbjct: 181 ANGAVHLMRAMYDAILIGVGTALADDPLLTVRLPGLEQRRPLRIVLDSALRISPASRLVA 240

Query: 239 TALLAPVIIVTENDDPVLALA-FRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLV 292
           TA   P +I+     P    A    +N+ +           DL+  L +L  RG+T +  
Sbjct: 241 TARSHPTLIIAGEAAPAANEARLVAENVAVARVPTDGGGRLDLRAALGLLASRGLTRIFC 300

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGS 348
           E G  +A + +     D II+  SQ  +   G+       +        +  V +   G 
Sbjct: 301 EAGPTLAEALLREDAADDIIMLTSQKRLARPGLCGFTAERINALEDGSRYRLVEQRAIGD 360

Query: 349 DVCLE 353
           D+   
Sbjct: 361 DLLTR 365


>gi|254375242|ref|ZP_04990722.1| hypothetical protein FTDG_01434 [Francisella novicida GA99-3548]
 gi|151572960|gb|EDN38614.1| hypothetical protein FTDG_01434 [Francisella novicida GA99-3548]
          Length = 355

 Score =  311 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 108/323 (33%), Positives = 162/323 (50%), Gaps = 5/323 (1%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + D  +M  AL  +       S NP V C+IVK+G +I  G     G  HAEV AL +
Sbjct: 1   MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALTK 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A ++A+GATAYVTLEPC H+GR+PPC   II+ GI++V++   DP+ +V+G+G++ L   
Sbjct: 61  AVDKAKGATAYVTLEPCCHHGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E + +     +   Q  K+  +  K A+S D  I +    S  I+   +  
Sbjct: 121 GITVEVGLLEKQAQELNKIFFHYQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSHQAFV 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
             H LR   DAIL+G  T++ D+P L  R+N  +   P R IL  H      +  +    
Sbjct: 181 NTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHPTRFILANHMTTIDHNWRVLDQR 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297
            A  I V       +A    +  I             L  LL  +   G+TSLLVEGG  
Sbjct: 241 HAKTIFVCSKISAQVATKLNQLGIEYWLFPQSQHQVCLDTLLEKMGNIGITSLLVEGGNK 300

Query: 298 VAHSFINSRLVDSIILYRSQIVI 320
             +SFIN +LV+    Y + ++I
Sbjct: 301 TLNSFINQKLVNEFYTYLAPVII 323


>gi|163854921|ref|YP_001629219.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bordetella petrii DSM 12804]
 gi|163258649|emb|CAP40948.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bordetella petrii]
          Length = 380

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 115/372 (30%), Positives = 175/372 (47%), Gaps = 17/372 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
             D  +M  AL  +R  +  T+ NP V C+IV+DG V+G G T   G PHAE+ AL +A 
Sbjct: 7   PDDLIWMRRALALARTVMYTTTPNPRVGCVIVRDGRVLGEGATQPPGGPHAEICALRDAA 66

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
             GE  +GAT YVTLEPCSHYGR+PPCA  +   G  RVVV + DP+ +V G+GL  L  
Sbjct: 67  ARGESVQGATLYVTLEPCSHYGRTPPCADAVAAAGPARVVVAMGDPNPQVRGQGLARLRA 126

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +   +   E       ++ R         +K+A S D    +    S  ITG  ++
Sbjct: 127 AGIAVTSNVCLDEALEINAGFVARMSRGIPWAWVKMAASLDGRSALHNGVSQWITGEAAR 186

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              H  RA+S  +L G+GTVL D+P L  R       +P + ++D  F +  D+++    
Sbjct: 187 ADGHAWRARSCVVLTGMGTVLKDNPRLNVRAVE-TPRAPRKAVVDGDFAIPEDARLFDG- 244

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGG 295
             A VII T   D   A     +N  ++          DL  ++  L       + VE G
Sbjct: 245 --AEVIIFTARTDAGKAARLAARNARVVALPGQQAGRVDLPAMMRWLGEHEFNEVHVEAG 302

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGI--PSPLEEGYL-EKNFMCVRRDYFGSDVCL 352
           A +  + +++  +D +++Y + +++G+       PL E     +          G D+ L
Sbjct: 303 AGLGGALMSAGCIDELLVYLAPVLLGDAAAMLRLPLIEHLDHARRLEFTDTARIGPDLRL 362

Query: 353 EYIGKNLCLQEL 364
                +   Q L
Sbjct: 363 R-ARDSTRWQAL 373


>gi|153808975|ref|ZP_01961643.1| hypothetical protein BACCAC_03276 [Bacteroides caccae ATCC 43185]
 gi|149128308|gb|EDM19527.1| hypothetical protein BACCAC_03276 [Bacteroides caccae ATCC 43185]
          Length = 348

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 116/360 (32%), Positives = 181/360 (50%), Gaps = 23/360 (6%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
            ++M   +  ++  +   + NP V  +IV DG +IG G     G  HAEV A+    +E 
Sbjct: 4   EKYMRRCIELAKNGLCNAAPNPMVGAVIVCDGRIIGEGYHIRCGEAHAEVNAIRSVKDES 63

Query: 67  -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
             + +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP  +V+GRG+Q L   G  
Sbjct: 64  LLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSQVAGRGIQKLKDAGRE 123

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQ 182
           ++  ++ESE +  +  ++T     R +ITLK A S D+ I +      P+  +  ++   
Sbjct: 124 VIVGVLESECRQLIRRFITFNTLHRPYITLKWAESADHFIDLERTDGQPVVLSSPLTSML 183

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  RA+S AI+VG  T L D+P LT R       +P+R++LD    L  D ++      
Sbjct: 184 VHKRRAESVAIMVGRRTALLDNPSLTVR--NWYGRNPIRVVLDRTLSLPNDLQLFDGN-- 239

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCD-CRDL-KKLLTILVGRGVTSLLVEGGAAVAH 300
            P ++ T N  P        KNI  I  D   +L  +++  L  R + SLLVEGG+ +  
Sbjct: 240 VPTLVFTANKHP------EAKNITYITIDFNHNLFTQIMEELYQRKIQSLLVEGGSQLLQ 293

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
           SFI + L D I + +    +   G+ +P     +   F     ++FG      YI ++  
Sbjct: 294 SFIANELWDEIYIEKCPNKL-YSGVKAP----EICDKFSYSTEEHFGRQ-FWHYIHQDKL 347


>gi|32491211|ref|NP_871465.1| hypothetical protein WGLp462 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166418|dbj|BAC24608.1| ribD [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 384

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 126/382 (32%), Positives = 185/382 (48%), Gaps = 30/382 (7%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++  D  +++ A   +      T  NP+V C+IV +  ++G G     G  HAE+ AL+ 
Sbjct: 2   INKEDLTYLNRAFNLAELGKFTTHPNPNVGCVIVLNKSIVGEGYHKIPGSDHAEICALKL 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ A+G+T YVTLEPCSH+G++P CAQ +I   ++ V+    DP+  VSG+G   L   
Sbjct: 62  AGKYAKGSTVYVTLEPCSHHGKTPSCAQALINAKVKEVIASAVDPNPLVSGKGFSMLKNA 121

Query: 123 GIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI V   + SE  I L+  +  R       ITLK+  S D         S  IT   S+ 
Sbjct: 122 GIKVKYNIMSEKSIKLNLGFFKRMKYGIPWITLKLGSSIDGRTATKKGISKWITSVESRK 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKL 230
            V +LRA+S AIL    TV+ D+ +LT R N L           +E  P+RII+D   K+
Sbjct: 182 DVQVLRAKSGAILSSAKTVIEDNSKLTVRWNDLPNNVKLKYSLKEERQPIRIIIDNSNKI 241

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD--------CRDLKKLLTIL 282
                IIK      +I +  + +  L      K I    C           DL KL+ +L
Sbjct: 242 LNSHDIIKHKG---IIFLVRSLNDNLTWPRHVKQIICSTCKKFSKTKTIRTDLFKLMILL 298

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNF 338
               + S+L+E GA ++ SF+ S L+D IILY+S  ++GE G+P        +  L   F
Sbjct: 299 GKNEINSVLIESGANLSGSFLLSGLLDEIILYQSPKILGEKGLPLFFLHKSFKLNLSPKF 358

Query: 339 MCVRRDYFGSDVCLE---YIGK 357
           +       G DV  +   YI K
Sbjct: 359 VISDVCRIGEDVRFKLHPYIRK 380


>gi|254516856|ref|ZP_05128914.1| riboflavin biosynthesis protein RibD [gamma proteobacterium NOR5-3]
 gi|219674361|gb|EED30729.1| riboflavin biosynthesis protein RibD [gamma proteobacterium NOR5-3]
          Length = 365

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 121/365 (33%), Positives = 187/365 (51%), Gaps = 14/365 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ ALR +         NP V C++V+D  ++G G T   G  HAEV AL+ AG+ AR  
Sbjct: 1   MARALRLAERGKYWARPNPHVGCVLVRDSGIVGEGFTQPAGGDHAEVVALKSAGDAARDC 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPC+H GR+PPC+Q +IE G+ RVVV + DP+ +V G GL+ L+  GI + + +
Sbjct: 61  TAYVTLEPCAHVGRTPPCSQALIEAGVARVVVGLKDPNPKVDGGGLRDLAAAGIEVSEGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M ++ ++ L  +L RQ   R  + +K+A+S D    MA   S  ITG  ++  V  LRA+
Sbjct: 121 MAAQVELQLAGFLARQRRGRPRLRIKLAMSLDGRTAMASGESQWITGADARRDVQKLRAE 180

Query: 190 SDAILVGIGTVLADDPELTCR-------LNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           S AIL GIGTVLADD  LT R       L    +   +R++ D   +   D+ +++ A  
Sbjct: 181 SCAILTGIGTVLADDCALTVRDAFFDEELLPPPQRRAIRVVADTRLRTPPDAAVLQGAQ- 239

Query: 243 APVIIVTENDDPVLALAFRKKNINII-YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            P +++  ND            + +    +  D  ++L+ L  R    +L+E G  +A +
Sbjct: 240 -PSLLLHANDAVCPGSLTGAARLALPSPAEGLDPAQILSALADRECNEILLESGPTLAGA 298

Query: 302 FINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
            + S L D +I+Y + +++G    P    P            V R   G D    +  + 
Sbjct: 299 MLQSGLADQLIVYMAPVLLGSRARPLMELPFNRMAEALRLRLVDRRQMGVDQRFVFEPRT 358

Query: 359 LCLQE 363
              +E
Sbjct: 359 FESKE 363


>gi|268317615|ref|YP_003291334.1| riboflavin biosynthesis protein RibD [Rhodothermus marinus DSM
           4252]
 gi|262335149|gb|ACY48946.1| riboflavin biosynthesis protein RibD [Rhodothermus marinus DSM
           4252]
          Length = 368

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 122/364 (33%), Positives = 170/364 (46%), Gaps = 25/364 (6%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA-----G 64
           M   L  +    G  S NP V  ++V  DG V+  G     G PHAE  A+EEA      
Sbjct: 1   MVRCLELAFRGAGRVSPNPMVGAVLVDTDGQVLAEGWHDRYGGPHAERVAIEEALRRHGP 60

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E  R AT YV LEPC+HYG++PPCA FII  GI RVVV + DP  +V+GRG+  L   G+
Sbjct: 61  EALRRATLYVNLEPCAHYGKTPPCADFIITHGIPRVVVGMVDPFPQVAGRGIARLRAHGV 120

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++E+  + F  A++      R  +TLK+A + D  +      S  I+G  ++  V
Sbjct: 121 QVEVGVLEAACRRFNEAFVHHVETGRPLVTLKMAQTLDGFVATRTGQSRWISGERARKLV 180

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  RA  D +LVG GT  ADDP LT R   ++   P+RI+LD    L    ++      A
Sbjct: 181 HCWRAVLDGVLVGSGTAAADDPALTVR--HVEGRQPVRIVLDRTGGLPPTLRLFTDEQAA 238

Query: 244 PVI-IVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRG------VTSLLV 292
             + IV     P  A   ++    +     R    DL+ LL  L   G      + SLLV
Sbjct: 239 RTLAIVGPGARPAYAALLQQAGGRVWTLPLRDGHLDLEALLERLGREGGPDGRPLQSLLV 298

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGS 348
           E G  +A +     LVD   L+ +  + GE G+P   + G         F   R    G 
Sbjct: 299 EAGPRLATALFRQGLVDRFFLFIAPRLFGE-GVPLLNDLGVRAVDEGPRFEAHRWVEVGE 357

Query: 349 DVCL 352
           D+  
Sbjct: 358 DLLF 361


>gi|284037818|ref|YP_003387748.1| riboflavin biosynthesis protein RibD [Spirosoma linguale DSM 74]
 gi|283817111|gb|ADB38949.1| riboflavin biosynthesis protein RibD [Spirosoma linguale DSM 74]
          Length = 352

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 123/368 (33%), Positives = 183/368 (49%), Gaps = 27/368 (7%)

Query: 1   MPVS--SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPH 54
           M VS  S D RFM  AL  +    G  S NP V C+I         +IG G     G  H
Sbjct: 1   MNVSGLSVDERFMRRALELATLGRGHVSPNPMVGCVITHGSGSQERIIGEGWHKRYGDWH 60

Query: 55  AEVQALEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           AEV A+     E       AT YVTLEPCSH+G++PPCA  +IE  ++RVV C DDP+  
Sbjct: 61  AEVNAVNSVLPEHQQLLSEATVYVTLEPCSHWGKTPPCADLLIERHVKRVVCCNDDPNPL 120

Query: 111 VSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC 169
           VSG+G   L   GI +   ++  +G++    + T   +KR +I LK A + D  I  AG 
Sbjct: 121 VSGQGFAKLRAAGIQVETGVLAEQGRLLNARFFTFFEQKRPYILLKWAETADGFIAGAGG 180

Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229
             V I+G ++   VH  R + DAILVG  T   D+P L  RL   +   P R++LD +  
Sbjct: 181 QPVKISGDLAHRLVHRWRGEEDAILVGANTARLDNPRLNTRL--WEGKDPTRVVLDRNLT 238

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
           L+ D  +   +   P ++   +    L       N+  +  +   L ++++ L  R V S
Sbjct: 239 LTTDLHLFDGSQ--PTLVYHASQTDALPDL---PNVQYVVAES--LYQVMSDLYQRKVQS 291

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           +LVEGGA V ++F+ + L D + ++RS+ ++G  G+ +P   G +        R+  G D
Sbjct: 292 VLVEGGAVVLNAFMEAGLWDEMRVFRSRTMLG-NGVKAPTVRGIIH------SREKVGDD 344

Query: 350 VCLEYIGK 357
               Y+  
Sbjct: 345 ELTSYMKP 352


>gi|241667512|ref|ZP_04755090.1| pyrimidine reductase/pyrimidine deaminase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876058|ref|ZP_05248768.1| pyrimidine reductase/pyrimidine deaminase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254842079|gb|EET20493.1| pyrimidine reductase/pyrimidine deaminase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 356

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 109/361 (30%), Positives = 171/361 (47%), Gaps = 14/361 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + +  +M  AL  +       S NP V C+IVK+G +I  G     G  HAE+ AL++
Sbjct: 1   MKNIENYYMQQALTLANRGRLSVSPNPMVGCIIVKNGAIISEGWHEAVGEAHAEIYALKK 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG++A+GATAYVTLEPC H+GR+PPC   +I  GI++VVV   DP+  V+G+G+Q L   
Sbjct: 61  AGDKAKGATAYVTLEPCCHHGRTPPCTDALIRAGIQKVVVATLDPNPLVAGKGIQKLKDA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   +++ + +     +   Q  ++  +  K A+S D  I + G  S  I+   +  
Sbjct: 121 GIEVKVGILQKQAQEQNKIFFHYQKTQKPFVYAKWAMSLDGKIAVNGNDSKKISSNEAFV 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
             H LR   DAIL+G  T++ D+P L  R+   ++  P+R I+  +      S  +    
Sbjct: 181 DTHQLRNICDAILIGKQTLIDDNPSLDVRIQLSKKKHPVRFIISNNLSEVDKSWRVLDQN 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297
            A  I V       +A       I             L  LL  +   G+TSLLVEGG  
Sbjct: 241 HAKTIFVCSKISAQVANELDNIGIEYWLLPTFKGQVCLDSLLNKMGQTGITSLLVEGGKK 300

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
              +FIN +L++    Y S +VI              ++  +     + G D+ +    K
Sbjct: 301 TLENFINQKLINEFATYLSPVVIAGCN---------PKEKLIFQDVSFLGEDLLINSYFK 351

Query: 358 N 358
            
Sbjct: 352 E 352


>gi|325568121|ref|ZP_08144562.1| riboflavin biosynthesis protein RibD [Enterococcus casseliflavus
           ATCC 12755]
 gi|325158322|gb|EGC70473.1| riboflavin biosynthesis protein RibD [Enterococcus casseliflavus
           ATCC 12755]
          Length = 358

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 113/361 (31%), Positives = 173/361 (47%), Gaps = 12/361 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG--EE 66
            +M  A+  ++     T TNP V  +IVK+  VI +G     G PHAE  A+E+    E+
Sbjct: 4   EYMRLAIAEAKKGRYQTFTNPLVGAVIVKEQRVIAKGAHLVYGQPHAERNAIEQCHSSED 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
              +T YVTLEPC+H G+ PPC Q II+ GI++VV+   DP+  V+G+G ++L  +GI +
Sbjct: 64  LINSTLYVTLEPCNHQGKQPPCTQLIIDSGIKKVVIGQLDPNPIVAGQGKRFLENQGIDV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  + E+E +     Y      +  ++ LK A++ D  I         ITG      VH 
Sbjct: 124 LVGIEETEVRRLNPHYNFYHQHQLPYVALKQAITLDGRIAHDAQTRSAITGSAVWQNVHQ 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-IKTALLAP 244
            R     ILVG  TVL DDP L   +       P+RI++D   +     ++ +     AP
Sbjct: 184 ERGDYQGILVGSQTVLTDDPTLLTTIE--TSFPPIRIVVDRRGRTLSQPQLALFADDSAP 241

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           V I T+      A++    ++++I  +   +  LL  L  R V SL VEGGAA+  +F+ 
Sbjct: 242 VWIFTQQA----AVSDLPAHVSVIQLEELTIAALLKELATRQVQSLYVEGGAAIHDAFLA 297

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLE--KNFMCVRRDYFGSDVCLEYIGKNLCLQ 362
           S L    I Y +   +G   + S   E   +  +    V     G DVC+       C Q
Sbjct: 298 SGLWQESITYVAPKFLGGNSLASFTSERTPKQLQQLTEVTVTAVGEDVCIRGRRPEECSQ 357

Query: 363 E 363
           +
Sbjct: 358 D 358


>gi|172058721|ref|YP_001815181.1| riboflavin biosynthesis protein RibD [Exiguobacterium sibiricum
           255-15]
 gi|171991242|gb|ACB62164.1| riboflavin biosynthesis protein RibD [Exiguobacterium sibiricum
           255-15]
          Length = 348

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 119/356 (33%), Positives = 180/356 (50%), Gaps = 15/356 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A++ +R   G TS NPSV C+I K G V G G   + G PHAEV+AL  AGE ARGA
Sbjct: 5   MHQAMQLARMLDGQTSPNPSVGCVITKHGKVFGFGAHRFAGGPHAEVEALNMAGEAARGA 64

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-IIVDRM 129
             YVTLEPC+H+G++PPC + I+  GI+RV V  +D    V+G+G++ L   G  +   +
Sbjct: 65  DLYVTLEPCNHHGKTPPCTEAILAAGIKRVFVATEDRHAIVAGQGIKRLRDAGLTVEVGL 124

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E E   F   +       R ++T+K+A S + ++         IT   ++     LRA 
Sbjct: 125 LEDEAVRFYTPFWQSLKRNRPNVTVKVAQSLNGIVTT--GEQRFITSLAAREAGRELRAT 182

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DAILVG  TVL DDP LT R     E  P+RI++D   +L   ++I +  L     +  
Sbjct: 183 HDAILVGSETVLVDDPALTLRTEAGPE--PIRIVVDRRGRLPETAQIFRDGLNTTYWLT- 239

Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
                       + N+  +       +++L  L  +G+ S+L+EGG  +  +F+ + LVD
Sbjct: 240 -----EQPRVSAQSNVTALVGTYATPEQILETLYAQGIHSVLIEGGPTIQSAFLEADLVD 294

Query: 310 SIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI--GKNLCLQE 363
            + +Y++  V+   G+P       +E  F        G DV L Y   G   C Q+
Sbjct: 295 RLEVYQAPSVL--KGMPGLASAVEIEDRFDLTAVAPIGQDVHLRYARKGDGSCSQD 348


>gi|33593884|ref|NP_881528.1| putative riboflavin-specific deaminase [Bordetella pertussis Tohama
           I]
 gi|33563958|emb|CAE43220.1| putative riboflavin-specific deaminase [Bordetella pertussis Tohama
           I]
 gi|332383303|gb|AEE68150.1| putative riboflavin-specific deaminase [Bordetella pertussis CS]
          Length = 386

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 120/367 (32%), Positives = 181/367 (49%), Gaps = 17/367 (4%)

Query: 1   MPVSS--FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
           M  S+   D  ++  AL  +R  +  T+ NP V C+IV+DG V+G G T   G PHAEV 
Sbjct: 1   MNTSTPTDDVSWIRRALALARSVMYSTAPNPRVGCVIVRDGQVLGEGATQPPGGPHAEVC 60

Query: 59  ALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           AL EA   G    GAT YVTLEPCSH+GR+PPC   ++     RVVV + DP+ RV+G+G
Sbjct: 61  ALREAAARGASLAGATVYVTLEPCSHFGRTPPCVDALVAAAPARVVVAMGDPNPRVNGQG 120

Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           L  L   GI + + +   E       +  R       + LK+A S D    +    S  I
Sbjct: 121 LARLRAAGIAVTEDVCRDEALELNAGFAARMSRGLPWVWLKLATSLDGRSALHNGVSQWI 180

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           TG  ++   H  RA+S  +L G+GTVL DDP+L  R      H P + ++D  F++  D+
Sbjct: 181 TGEAARADGHHWRARSGVVLTGMGTVLKDDPQLNAR-AVQTSHPPRKAVIDGRFEIPEDA 239

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTS 289
           ++      A V+I T   D   A     +N  +I       D  DL  ++  L  + +  
Sbjct: 240 RLFDDG--AQVLIFTARSDAAKARRMADRNARVIELPGVRPDRVDLPAVMRWLASQEINE 297

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG--IPSPLEEGYL-EKNFMCVRRDYF 346
           + VE GA ++ + +    VD +++Y + +++G+    +  PL E     + F        
Sbjct: 298 VHVEAGAGLSGALLAEDCVDELLVYLAPVLLGDAAGMVRLPLLEHLDGARRFEFAELAPV 357

Query: 347 GSDVCLE 353
           G+DV L 
Sbjct: 358 GTDVRLR 364


>gi|254469111|ref|ZP_05082516.1| riboflavin biosynthesis protein RibD [Pseudovibrio sp. JE062]
 gi|211960946|gb|EEA96141.1| riboflavin biosynthesis protein RibD [Pseudovibrio sp. JE062]
          Length = 381

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 133/367 (36%), Positives = 210/367 (57%), Gaps = 13/367 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPHAEVQAL 60
           +   RFM+AAL +     G T  NP V  ++ KD     +++G+G T   G  HAEV A+
Sbjct: 13  AEHERFMAAALSYGIRAKGRTWPNPPVGAILTKDFGDGPVIVGQGATLPPGGSHAEVLAI 72

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           ++AGE A+GATAYVTLEPC+HYGR+ PCA+ ++  G+ RVV    DP+  V+GRG + L 
Sbjct: 73  KDAGEHAKGATAYVTLEPCAHYGRTGPCARALVAAGVSRVVYGTADPNPAVAGRGKKILE 132

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + G+ ++  ++E E +  +  +++R + +R  + LK+AVS+D  IG  G G V I+  +S
Sbjct: 133 EGGVEVLIGVLEKECREAVRGHISRILNERPFVQLKMAVSKDGYIGKRGAGQVAISSPLS 192

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  VH +RAQ DAI+VGIGTVL DDPEL+ RL G+   SP  ++ D   ++ L SK+++ 
Sbjct: 193 RQLVHAMRAQMDAIVVGIGTVLEDDPELSVRLPGMAHRSPQPVVFDSQARIPLSSKLVQN 252

Query: 240 ALLAPVIIVTENDDPV-LALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVE 293
           A    + +V  ++ P     A  ++ + +I  DC       L K L  L   G++ ++VE
Sbjct: 253 AESNSLWVVIGDNAPDHRVSALEREGVTVIVNDCLRNGKVCLDKALDALYMHGLSQIMVE 312

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY--LEKNFMCVRRDYFGSDVC 351
           GGA +AH  +   LVD +++++    +G  G+     EG   L+  +      + G D+ 
Sbjct: 313 GGAELAHGLLQQDLVDELLIFQGTSTVGSDGLLPFGFEGLESLQDGYNKQMLRHVGEDLL 372

Query: 352 LEYIGKN 358
             Y  K 
Sbjct: 373 WRYTPKE 379


>gi|87125464|ref|ZP_01081309.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           and5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Synechococcus sp. RS9917]
 gi|86166764|gb|EAQ68026.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           and5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Synechococcus sp. RS9917]
          Length = 369

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 121/363 (33%), Positives = 182/363 (50%), Gaps = 14/363 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +M  AL+ +    G TS NP V  +++   G ++G G  A  G PHAEV AL +AGE AR
Sbjct: 9   WMRRALQLAALVEGQTSPNPLVGAVVLDAHGTLVGEGYHARAGKPHAEVGALVQAGEAAR 68

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           G T  VTLEPC H+GR+PPC + +I  GIRRVVV + DPD R++G GLQ L   G+ ++ 
Sbjct: 69  GGTLVVTLEPCCHHGRTPPCVEAVIAAGIRRVVVALTDPDPRMAGGGLQRLRDAGLEVIP 128

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++E+E      A++ R    R    LK A+S D    +    S  I+G  ++  VH LR
Sbjct: 129 GVLEAEAAHQNRAFVHRVKTGRPWGLLKWAMSLDGRTALPNGASQWISGAAARAWVHRLR 188

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL----- 242
           A  DA++VG GTV ADDP LT R  GL+   P+R++L     L   ++I  TA       
Sbjct: 189 AHCDAVIVGGGTVRADDPLLTSR--GLRTPEPLRVVLSRSLDLPAAARIWTTAEAPTLLA 246

Query: 243 -APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
             P +   + +   L  A     +        +   LL  L  RG   +L E G A+A +
Sbjct: 247 HGPAVEAADAESSPLLEALGAAGVICTALKRCEPLALLEQLASRGCNRVLWECGPALAAA 306

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
            +    V  + +  +  ++G     +PL +      F  + +     D+ L+ + ++  +
Sbjct: 307 ALQQGCVQELAVVIAPKLLGGLAARTPLADLG----FTALDQVIPLQDLNLQRLERDAVV 362

Query: 362 QEL 364
           Q L
Sbjct: 363 QAL 365


>gi|170288788|ref|YP_001739026.1| riboflavin biosynthesis protein RibD [Thermotoga sp. RQ2]
 gi|170176291|gb|ACB09343.1| riboflavin biosynthesis protein RibD [Thermotoga sp. RQ2]
          Length = 348

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 122/363 (33%), Positives = 185/363 (50%), Gaps = 24/363 (6%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
             FM  A+  ++  +G  + NP V  ++VKDG +I  G   Y G PHAE  A+E A   G
Sbjct: 3   ETFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARKKG 62

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E+ RGAT  VTLEPC H+G++PPC   IIE GI+ VV+   DP+  VSG G++     GI
Sbjct: 63  EDLRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNP-VSGNGVEKFRNHGI 121

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +++ ++E E K     ++T   +KR  + LK A + D  I      S  IT  + + +V
Sbjct: 122 EVIEGVLEEEVKKLCEFFITYVTKKRPFVALKYASTLDGKIADHRGDSKWITDKL-RFKV 180

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK-TALL 242
           H +R    A+LVG GTVL DDP+LTCRL   +  +P+R+ILD      L  K+ +     
Sbjct: 181 HEMRNIYSAVLVGAGTVLKDDPQLTCRL--KEGRNPVRVILDRKG--VLSGKVFRVFEEN 236

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           A VI+ TE+++        K            ++ +L  L  R + S+LVEGG+ V   F
Sbjct: 237 ARVIVFTESEEAEYPPHVEKA------LSDCSVESILRNLYERDIDSVLVEGGSKVFSEF 290

Query: 303 INSRLVDSIILYRSQIVIGEGG--IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
           ++    D +  + S  + G+G       L +  +   F  V  ++  S+  +E      C
Sbjct: 291 LDH--ADVVFGFYSTKIFGKGLDVFSGYLSDVSVPPKFKVVNVEFSDSEFLVEMR---TC 345

Query: 361 LQE 363
            +E
Sbjct: 346 SRE 348


>gi|198273955|ref|ZP_03206487.1| hypothetical protein BACPLE_00091 [Bacteroides plebeius DSM 17135]
 gi|198273033|gb|EDY97302.1| hypothetical protein BACPLE_00091 [Bacteroides plebeius DSM 17135]
          Length = 346

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 112/341 (32%), Positives = 176/341 (51%), Gaps = 18/341 (5%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D ++M   ++ +R  +   + NP V  +IV+DG +IG G     G  HAEV A+    
Sbjct: 2   TIDEKYMRRCIQLARNGICHAAPNPMVGAVIVRDGKIIGEGYHVRCGEGHAEVNAIASVK 61

Query: 65  EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           +E   + AT YV+LEPCSHYG++PPCA  II  GI RVVV   DP   V+GRG+Q L   
Sbjct: 62  DESLLKDATIYVSLEPCSHYGKTPPCADLIIRKGIPRVVVGCVDPFSLVAGRGIQKLRDA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM--IGMAGCGSVPITGFIS 179
           GI +   ++E E +  + A++T  ++KR +ITLK A S D    I      +V ++  +S
Sbjct: 122 GIEVTVGVLEKECRELIRAFVTFNLKKRPYITLKWAQSADGFLDIRREDGNAVRLSTPLS 181

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
              VH +RA+  AILVG  T   D+P LT R       +P+R+++D    L     +   
Sbjct: 182 TLAVHKMRAEQKAILVGRRTAQLDNPSLTVR--EWYGQNPLRLVIDRQLTLPPHLHLFDG 239

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAA 297
           +   P ++ TE +           N+  +  D     L +++ +L  + + +LLVEGG+ 
Sbjct: 240 S--TPTLVFTEKEKAATQ------NLTYVTLDFGQNILPQIMQVLYEQKIQTLLVEGGSQ 291

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
              +F+   L D   +  +++ +   GIP+PL     E  F
Sbjct: 292 TLQAFLEQGLWDEAFIEHARVTL-HDGIPAPLLPHGQESRF 331


>gi|254480859|ref|ZP_05094105.1| riboflavin biosynthesis protein RibD [marine gamma proteobacterium
           HTCC2148]
 gi|214038654|gb|EEB79315.1| riboflavin biosynthesis protein RibD [marine gamma proteobacterium
           HTCC2148]
          Length = 371

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 120/364 (32%), Positives = 184/364 (50%), Gaps = 22/364 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           +  + R M+ AL+ +R        NP V C++ +DG VIG G T   G  HAEVQAL EA
Sbjct: 3   TELNTRMMARALQLARRGQYSCMPNPHVGCVLERDGAVIGEGFTQPAGGNHAEVQALAEA 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G +A GATAYVTLEPCSH G++ PCA  +I  G+ RV   ++DP+  V+G GL  L   G
Sbjct: 63  G-DASGATAYVTLEPCSHIGKTGPCADALITAGVSRVFAAIEDPNPLVAGNGLDKLRAAG 121

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +   ++E++ +  +  +++R    R  +  K+A+S D    MA   S  ITG  ++  
Sbjct: 122 IEVEVGLLEADARKVIPGFISRMTGGRGRVRAKLAMSLDGRTAMASGESQWITGPAARAD 181

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSL 232
           V  LRA S A++ GIGTVL+DD  LT R   L            + P+R++LD + +   
Sbjct: 182 VQRLRAMSCAVITGIGTVLSDDCSLTVRAAELGLPVAEAELASLNQPLRVVLDSNLQTPA 241

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVT 288
            + I+  A  AP +I  +        A     ++ +      +  +L +L+  L  R   
Sbjct: 242 SAAILDGA--APTLICHDEKLDAST-AIVASGVDRLALGGDENGLNLAQLIDYLSARQSN 298

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345
            +LVE G  +A +F+   L+D +I+Y + +++G    P    PLE    +          
Sbjct: 299 EILVECGPRLAGAFVREGLLDELIVYMAPVLMGSAARPLLDLPLEAMAQKIPLQIEDMRK 358

Query: 346 FGSD 349
            G D
Sbjct: 359 VGDD 362


>gi|282857766|ref|ZP_06266975.1| riboflavin biosynthesis protein RibD [Pyramidobacter piscolens
           W5455]
 gi|282584436|gb|EFB89795.1| riboflavin biosynthesis protein RibD [Pyramidobacter piscolens
           W5455]
          Length = 364

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 129/368 (35%), Positives = 180/368 (48%), Gaps = 17/368 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M     D   M  AL  +   +G T+ NP V C+IVKDG V+GRG   + G  HAE  AL
Sbjct: 1   MRQQWTDEHHMRQALDLALRGLGKTTPNPMVGCVIVKDGEVVGRGWHDHLGGLHAEAAAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AG++ARGAT YVTLEPCSH GR PPCA  +++ G+ R V  V DP+ +VSGRGL+ LS
Sbjct: 61  RDAGDKARGATVYVTLEPCSHQGRQPPCAPALVKSGVTRCVCAVGDPNPKVSGRGLKILS 120

Query: 121 QKGIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             G+     ++E E       + + Q  +R  +TLK A+S D  + +A   S  ITG  +
Sbjct: 121 DAGVETVCGVLEKEASWLNRGFFSLQTRRRPWVTLKAALSLDGSMALADGTSRWITGEAA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           + + H LR ++DAIL+G GT+  DDP LT R   ++  SP  +IL        D+ ++K 
Sbjct: 181 RAESHRLRGENDAILIGSGTLRHDDPALTVR--AVEGPSPRPVILCS------DAAVLKG 232

Query: 240 ALLA---PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
              A     I+       V      +           DLK  L  L   G+  +LVE G 
Sbjct: 233 NYKALRRDAIVFVPEGTAVPPERSGRVYAVSSSAGRPDLKAALEKLAELGLARVLVEAGP 292

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLE 353
            +  +FI + L D   L+ + +  GEG   +    L                 G D+ LE
Sbjct: 293 TICSAFIAAGLADEYQLFVAPVFTGEGRKITGSIRLRRMDDAIPMTLRDVRTAGRDLWLE 352

Query: 354 YIGKNLCL 361
             G N C 
Sbjct: 353 --GGNPCS 358


>gi|329898131|ref|ZP_08272333.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [gamma
           proteobacterium IMCC3088]
 gi|328920911|gb|EGG28343.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [gamma
           proteobacterium IMCC3088]
          Length = 361

 Score =  309 bits (791), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 112/360 (31%), Positives = 174/360 (48%), Gaps = 19/360 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A+  +         NP V C+IVKDG ++G G T   G  HAEV AL +AGE+ARGA
Sbjct: 1   MQRAINLAEHGKYSAKPNPHVGCVIVKDGQIVGEGYTQPPGQGHAEVMALAQAGEQARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPC+H GR+ PC+Q +I+ GI +VV  ++DP   V+G G + L   GI +   +
Sbjct: 61  TAYVTLEPCNHQGRTGPCSQALIQAGISKVVAAIEDPYPEVAGSGFEALKHAGIEVRVGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +    K  L  +L R       + LK+A S D  I +A   S  ITG  ++  V  LRA+
Sbjct: 121 LADTVKQQLQGFLLRLERGYGRVRLKLACSLDGKIALANGESQWITGPSARRDVQRLRAE 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDSKIIKT 239
           +  ++ G+GTVL DD +L  R   L            H P+R + D   + +  +K++  
Sbjct: 181 AGLVITGVGTVLEDDCQLNVREGDLPLDPNLAREATAHQPLRAVFDSTLRTTNGAKVLSG 240

Query: 240 ALLAPVIIVTEND--DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
              A  +   E     P          +  +         LL ++       +L+E G  
Sbjct: 241 ---ARTLFCAEPKTTRPDHINPENIVEVAALKTPAGLKNALLQLMAIAPANEILLECGPR 297

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           +A S++N+ L+D +ILY++ +++G      +   +       NF  +     G D+ L +
Sbjct: 298 LAGSWLNAGLIDELILYQAPVILGHNAQSLVHMDIATMTQRLNFGLIDTRRIGPDLKLTF 357


>gi|298291639|ref|YP_003693578.1| riboflavin biosynthesis protein RibD [Starkeya novella DSM 506]
 gi|296928150|gb|ADH88959.1| riboflavin biosynthesis protein RibD [Starkeya novella DSM 506]
          Length = 370

 Score =  309 bits (791), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 143/369 (38%), Positives = 212/369 (57%), Gaps = 18/369 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPHAE 56
           M  +  D   M+AAL   R  +G T  NP+V  L+V++     +V+GRG T+ GG PHAE
Sbjct: 1   MTKTIHDEALMAAALSVGRRELGHTWPNPAVGALVVRETGGAPVVLGRGWTSKGGRPHAE 60

Query: 57  VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            QAL +AGE ARGAT YVTLEPCSH+G +PPC   +   G+ RVV  ++DPD RV+GRG 
Sbjct: 61  PQALAQAGEGARGATLYVTLEPCSHHGLTPPCVDAVRASGVARVVAAIEDPDFRVAGRGF 120

Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
             L + GI +   +   E ++    ++ R  E R H+ LK+AVS D  +G+AG     IT
Sbjct: 121 SLLREAGIDVEVGVGAPEARLAHAGHIRRVTEGRPHVMLKLAVSADGKVGLAGRRPAAIT 180

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
           G +++ +VHL+R+  DA+L GIGTVLADDP LTCRL G+++ SP+RI+LD   +L   S 
Sbjct: 181 GEVARGRVHLMRSIYDAVLTGIGTVLADDPLLTCRLPGMEDRSPLRIVLDADLRLPSTSA 240

Query: 236 IIKTALLAPVIIVTENDDPVLALA-FRKKNINIIYCDCR-----DLKKLLTILVGRGVTS 289
           + ++   AP+ I+   D PV          + ++    R     DL + L +L  RG+T 
Sbjct: 241 LARSLGTAPLWIIAAEDAPVAPEEMLVAMGVEVMRVRRRPDGGIDLNEALKLLALRGITR 300

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           L+VE G  V+ + +   LVD   ++ + + +GEG + +        +       D + SD
Sbjct: 301 LMVEAGPRVSTAVLREGLVDEANIFLAPVQLGEGALDAL-------EGLPLSALDDYLSD 353

Query: 350 VCLEYIGKN 358
             LE+ G++
Sbjct: 354 AELEWHGED 362


>gi|312797040|ref|YP_004029962.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Burkholderia rhizoxinica HKI 454]
 gi|312168815|emb|CBW75818.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26)
           / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC
           1.1.1.193) [Burkholderia rhizoxinica HKI 454]
          Length = 382

 Score =  309 bits (791), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 121/363 (33%), Positives = 179/363 (49%), Gaps = 16/363 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S FD   M  AL  +   +  TS NP V C++VKDG VIG G T   G  HAE+ AL++
Sbjct: 2   FSDFDRLQMQRALVLAERGLYTTSPNPRVGCVLVKDGEVIGEGFTQPAGQDHAEICALKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G    GATAYVTLEPCSH+GR+PPCA  +IE GI RV+  ++DP+ +VSGRGL  L
Sbjct: 62  ARLRGHTPAGATAYVTLEPCSHFGRTPPCANTLIEAGITRVIAAMEDPNPQVSGRGLASL 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              G+ +   ++  E +     +++R       + LKIA + D    +    S  IT   
Sbjct: 122 RDAGVDVRCGLLAHEAQELNVGFVSRMTRGVPWVRLKIAATLDGRTALPNGQSQWITSSA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H  RA++ A L GIGTV  DDP++T R        P+R+++D    + LD++I+ 
Sbjct: 182 ARTDGHAWRARACATLTGIGTVREDDPQMTVR-AVSTPRQPLRVLVDSCLDVPLDARILT 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEG 294
            A    +    +      A A R     +I         DL   L +L  RG+  L VE 
Sbjct: 241 GAPPLVICARDDAAFAARAHALRAAGAEVIALPNQSGKVDLPAALRLLAARGINELHVEA 300

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGI-----PSPLEEGYLEKNFMCVRRDYFGSD 349
           G  +  S +    VD ++LY +  ++G         P P  +  +   +  + R   G D
Sbjct: 301 GYKLNGSLLREGCVDELLLYIAPALLGNATGMFNLEPPPTLDQRVRLQYHSIER--IGED 358

Query: 350 VCL 352
           + +
Sbjct: 359 LRV 361


>gi|160888034|ref|ZP_02069037.1| hypothetical protein BACUNI_00442 [Bacteroides uniformis ATCC 8492]
 gi|317478584|ref|ZP_07937741.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 4_1_36]
 gi|156862533|gb|EDO55964.1| hypothetical protein BACUNI_00442 [Bacteroides uniformis ATCC 8492]
 gi|316905225|gb|EFV27022.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 4_1_36]
          Length = 351

 Score =  308 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 112/336 (33%), Positives = 173/336 (51%), Gaps = 23/336 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++S + ++M   ++ ++  +  T+ NP V  +IV DG +IG G     G  HAEV A+  
Sbjct: 1   MNSEEEKYMLRCIQLAQNGLCNTAPNPMVGAVIVCDGKIIGEGYHVRCGEAHAEVNAIRS 60

Query: 63  AGE--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             +    + +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP  +V+GRG+Q L 
Sbjct: 61  VKDTSLLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCRDPFSKVAGRGIQKLK 120

Query: 121 QKG-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG--MAGCGSVPITGF 177
             G  ++  ++E+E +  +  ++T    +R +ITLK A S D  I         V ++  
Sbjct: 121 DAGREVIVGVLETECRQLIRRFITFHTLRRPYITLKWAESSDRYIDYSRTDGKPVILSSP 180

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
           ++   VH  RA+  AILVG  T   D+P L  R       SP+RI+LD   KLS    + 
Sbjct: 181 LTSMLVHKKRAEHSAILVGTRTAELDNPCLNVR--HWYGRSPVRIVLDRQQKLSPSLHLF 238

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLV 292
             +   P ++ TE     L         N+ Y    D     L +L+  L  RG+ SLLV
Sbjct: 239 DGS--VPTLVFTEAPHAPLP--------NVEYLPVSDYRRNILPELMETLYTRGLQSLLV 288

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
           EGG+    SFI++ L D I +  +  ++   G+ +P
Sbjct: 289 EGGSQTLQSFIDAGLWDEIFVEEAPHLL-HSGVKAP 323


>gi|124023623|ref|YP_001017930.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. MIT 9303]
 gi|123963909|gb|ABM78665.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Prochlorococcus marinus str. MIT 9303]
          Length = 368

 Score =  308 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 114/358 (31%), Positives = 175/358 (48%), Gaps = 10/358 (2%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +M  AL+ +    G TS NP V  +++ K G ++G G  A  G PHAEV AL +AGE+A 
Sbjct: 14  WMRRALQLAALADGRTSPNPLVGAVVLDKAGKLVGEGFHACAGEPHAEVGALAQAGEQAS 73

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           G T  VTLEPC H GR+PPC Q +I  G+RRVVV + DPD RV+G G+  L   G+ ++ 
Sbjct: 74  GGTLVVTLEPCCHQGRTPPCTQAVIAAGLRRVVVAMQDPDPRVAGAGITRLRDAGLEVIT 133

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++E E      A++ R    R    LK A+S D    +    S  I+G  +++ VH LR
Sbjct: 134 AVLEPEAAHQNRAFVHRVSTGRPWGILKWAMSLDGRTALPNGASQWISGGEARSWVHRLR 193

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            Q DA++VG GTV ADDP LT R  G  +  P R++L     L   +++   A+    ++
Sbjct: 194 GQCDAVIVGGGTVRADDPLLTSR--GHSDPEPKRVVLSRSLDLPQQAQLWDIAVAH-TLV 250

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
               +     LA   +   ++     +  +LL  L  +    +L E G A+A + +    
Sbjct: 251 AHGLEPGHEQLAHLPEGPELLALPASEPLELLQALAQQDCNRVLWECGPALAAAALQQGC 310

Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVCLEYIGKNLC 360
           V  + +  +  ++G     +P ++         V          G+D  L+Y     C
Sbjct: 311 VQELAVVVAPKLLGGLPARTPFDDLGFTSMKEVVGLASGSLQQLGADWLLQYELSKHC 368


>gi|84515381|ref|ZP_01002743.1| riboflavin biosynthesis protein RibD [Loktanella vestfoldensis
           SKA53]
 gi|84510664|gb|EAQ07119.1| riboflavin biosynthesis protein RibD [Loktanella vestfoldensis
           SKA53]
          Length = 359

 Score =  308 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 130/357 (36%), Positives = 191/357 (53%), Gaps = 8/357 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DAR+M+ AL+  R  +G    NP+V C+IV  G ++GRG T  GG PHAE  AL +AG +
Sbjct: 3   DARYMALALQLGRRGMGRVWPNPAVGCVIVNHGRIVGRGWTQDGGRPHAETVALAQAGPD 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GAT YVTLEPC+H+G++PPCA  +I  G+ RVVV + DPD RV+GRG+  L Q GI +
Sbjct: 63  ACGATVYVTLEPCAHHGQTPPCAAALIAAGVARVVVALGDPDARVAGRGIALLEQAGIAV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++  + +     +L+R    R  +TLK+A + D  I  A   S  ITG  ++  VH+
Sbjct: 123 ETGLLADQARADHAGFLSRITAARPFVTLKLAGTLDGRIATASGESQWITGTEARRAVHM 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +RA+ DA+LVG GTV ADDP L+ R  G+    P+RI++    KL L S++ +TA  +PV
Sbjct: 183 MRARHDAVLVGAGTVRADDPALSVRGLGIP-RQPVRIVVSRAVKLPLTSQLAQTARQSPV 241

Query: 246 IIVTENDDPVLALAFRKK--NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            I    +  V              +     + + ++  L   G+T +  EGG  +A S +
Sbjct: 242 WICHGAEADVADWLALGAVSLPCAVRAGQVEPEAMMQALASAGITRVFCEGGGMLAASLL 301

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLEYIG 356
            + LVD +++  +   IG  G P+    G         F        G DV   +  
Sbjct: 302 GAGLVDDLVVMTAGCAIGAEGTPALAAMGIGRLADAPRFALHDLARLGDDVMTHWRR 358


>gi|254441291|ref|ZP_05054784.1| riboflavin biosynthesis protein RibD [Octadecabacter antarcticus
           307]
 gi|198251369|gb|EDY75684.1| riboflavin biosynthesis protein RibD [Octadecabacter antarcticus
           307]
          Length = 370

 Score =  308 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 128/362 (35%), Positives = 190/362 (52%), Gaps = 19/362 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK----DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           M  AL   R  +G    NP+V C+IV+     G VIGRG TA GG PHAE +AL+  G +
Sbjct: 1   MGMALSLGRRGLGRVWPNPNVGCVIVRPNENGGRVIGRGWTADGGRPHAETRALD--GID 58

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GAT+YVTLEPC+H+G++PPC   +I   + RVV+   DPD RV+G+G+  L   GI +
Sbjct: 59  ADGATSYVTLEPCAHHGKTPPCVDALIGANVGRVVIATGDPDPRVAGKGVAMLRAAGIDV 118

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  + E E +  +  +L R  E R  +TLK+A S D  I  A   S  ITG  ++ +VH 
Sbjct: 119 ITGVREHEAREDMAGFLLRVTENRPFVTLKLASSFDGRIATATGQSKWITGPDARRKVHA 178

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +RA  DA+LVG GTV ADDP LT R  G     P+R++      +   + ++ T   AP+
Sbjct: 179 MRAGHDAVLVGAGTVRADDPTLTVRNTGA-VRQPVRVVASRRLDIGA-ANLLATLGDAPL 236

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            +    +  V A  +       + CD +    D   ++  L   G+T +  EGG ++A S
Sbjct: 237 WLCHGAN--VDAQKWADLGAKTLACDLQGRQIDPVDMMHKLAASGLTRVFCEGGGSLAAS 294

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
            + + LVD I+ + + I +G  G PS     L+       F  +     G+D+   +   
Sbjct: 295 LLGAGLVDEIVGFTAGIALGAEGTPSIGALGLDVLDDAPRFDLIETTQVGADIMHRWHRA 354

Query: 358 NL 359
           +L
Sbjct: 355 SL 356


>gi|299147398|ref|ZP_07040463.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_1_23]
 gi|298514676|gb|EFI38560.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_1_23]
          Length = 351

 Score =  308 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 109/357 (30%), Positives = 172/357 (48%), Gaps = 23/357 (6%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
            ++M   +  ++  +     NP+V  +IV +G +IG G     G  HAEV A+    +E 
Sbjct: 10  EKYMRRCIELAKNGLCNVPPNPTVGAVIVCNGRIIGEGYHIRCGEAHAEVNAIRSVKDES 69

Query: 67  -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
             + +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP   V+GRG+Q L   G  
Sbjct: 70  LLKHSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVTGRGIQKLRDAGRE 129

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG--MAGCGSVPITGFISKNQ 182
           +   ++E E +  +  ++T     R +ITLK A S D  I         + ++  ++   
Sbjct: 130 VTVGILEKECQSLIRRFITFNTLHRPYITLKWAESADRFIDIERTSGMPLILSSPLTSML 189

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  RA++DAI+VG  T L D+P LT R      H+P+R++LD    L  D +I      
Sbjct: 190 VHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDLQIFDGN-- 245

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
            P ++ TE   P         NI  I  D     L++++ +L  R + SLLVEGG+ +  
Sbjct: 246 VPTLVFTEKKQPART------NITYISIDFNHNTLEQIMEVLYQRKIQSLLVEGGSQLLQ 299

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           SFI+  L D   + +    +   G+ +P  +     +                Y+ +
Sbjct: 300 SFIDDELWDEAYIEKCPNRL-HSGVKAPQMDDKFSYSIEEHFERQI-----WHYVRR 350


>gi|228475866|ref|ZP_04060576.1| riboflavin biosynthesis protein RibD [Staphylococcus hominis SK119]
 gi|314936136|ref|ZP_07843483.1| riboflavin biosynthesis protein RibD [Staphylococcus hominis subsp.
           hominis C80]
 gi|228270021|gb|EEK11491.1| riboflavin biosynthesis protein RibD [Staphylococcus hominis SK119]
 gi|313654755|gb|EFS18500.1| riboflavin biosynthesis protein RibD [Staphylococcus hominis subsp.
           hominis C80]
          Length = 347

 Score =  308 bits (790), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 112/354 (31%), Positives = 173/354 (48%), Gaps = 14/354 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
            FM  A++ ++   G T  NP V  ++VKDG ++G G     G  HAEVQAL+ A ++A+
Sbjct: 3   EFMKYAIQLAQMVEGQTGVNPPVGSVVVKDGRIVGLGAHLKQGEKHAEVQALDMAQDKAK 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           G T Y++LEPC+HYG +PPC   IIE G+ +V+  V   D  +S  G   L + GI V+ 
Sbjct: 63  GGTIYISLEPCTHYGSTPPCVNKIIEHGLSKVIYAV--KDTTLSSEGDIILEKAGIEVEY 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
               E       +   +  K   IT+K++ S D         S  IT    K  V+ LR 
Sbjct: 121 QYSEEAFALYEDFFKAKQHKIPEITVKVSTSLDGKQATDSGQSQWITNKAVKQDVYRLRH 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
             DA+L G GT+ AD+P+ T R+   +   P+RIIL    ++    +I     L+ + I 
Sbjct: 181 THDAVLTGNGTIEADNPQYTTRIQ--EGKHPIRIILSKRGQIDYSKQIFHD-QLSEIWIY 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           TEN +    L     +I IIY +  +LK +L+ +  RGV  LLVE G  +   F+ S  +
Sbjct: 238 TENHE----LKSPSHHIKIIYLETCNLKSILSDIYQRGVGRLLVEAGPQITSEFLQSNYL 293

Query: 309 DSIILYRSQIVIGEGGI-----PSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           D +I+Y +  +IG  G         + +      F  +  +    ++ +    K
Sbjct: 294 DHLIIYYAPKIIGGIGKNQFYQTDNVIDLADAPQFEVISTESIQQNIKMTLRKK 347


>gi|212223758|ref|YP_002306994.1| riboflavin biosynthesis protein RibD [Thermococcus onnurineus NA1]
 gi|212008715|gb|ACJ16097.1| riboflavin biosynthesis protein RibD [Thermococcus onnurineus NA1]
          Length = 361

 Score =  308 bits (790), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 121/370 (32%), Positives = 187/370 (50%), Gaps = 22/370 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   D +FM  AL  ++   G  + NP V  +IVKDG VIG G     G  HAE+ A+E+
Sbjct: 1   MMDEDKKFMHLALELAKRGEGWVNPNPMVGAVIVKDGEVIGVGWHRKFGEKHAEINAIED 60

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + RGAT YVTLEPCSH+G+ PPCA  II  G +RVVV + DP   V+GRG++ +
Sbjct: 61  AKDRGHDTRGATLYVTLEPCSHWGKQPPCADRIIAEGFKRVVVAMKDPHSLVAGRGIEKM 120

Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            + GI VD  ++E E K     ++     K   +++K+A++ D  I      S  ITG  
Sbjct: 121 QRAGIEVDVGILEEEAKKLNEIFIKYITTKIPFVSIKLALTLDGFIATESFSSQWITGDK 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS---K 235
           ++ +V  LR +  AI+VG GT+L D+P+L CRL         ++ILD H  +  +    +
Sbjct: 181 ARQKVQELRRRHMAIMVGAGTILRDNPKLNCRLPECPPK--YKVILDRHGLIGEELSGGR 238

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
             +      VII TEN +     AF + N  I+  +  D +++L  L   G+ S+L+EGG
Sbjct: 239 RFRLFNDGNVIIFTENPE-----AFGEVNATIV--EETDPERILRKLGEMGIDSVLIEGG 291

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCL 352
             +A  F++    D   ++    + G G  P     ++E            +  G  + +
Sbjct: 292 -RIACQFLS--YADKFYIFYGPKLFGRGIKPFECLSVKEANEAPVLEIESIEKLGESLLV 348

Query: 353 EYIGKNLCLQ 362
                +  +Q
Sbjct: 349 TAYPGDCGVQ 358


>gi|89073130|ref|ZP_01159669.1| Putative pyrimidine deaminase/pyrimidine reductase [Photobacterium
           sp. SKA34]
 gi|89051083|gb|EAR56540.1| Putative pyrimidine deaminase/pyrimidine reductase [Photobacterium
           sp. SKA34]
          Length = 374

 Score =  308 bits (790), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 115/368 (31%), Positives = 183/368 (49%), Gaps = 20/368 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            ++ D R M  A++ ++     T+ NP+V C+I     ++G G     G PHAEV AL++
Sbjct: 2   FTNLDTRLMLRAIQLAKRGCFTTAPNPNVGCVIAIGDEILGEGFHYRAGEPHAEVFALKQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  A+GATAYVTLEPCSHYGR+PPCA+ +I+ GI RV+  + DP+  V+GRG++ L + 
Sbjct: 62  AGTRAKGATAYVTLEPCSHYGRTPPCAEALIKSGISRVICAMVDPNPLVAGRGVEMLQKA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +   +++ E +    A++ +   K  ++ LK+A S D    +A   S  ITG  ++ 
Sbjct: 122 GVDVQVGLLKEEAQAINKAFIKQMTTKMPYVELKLASSLDGKTALANGESKWITGPYARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKL 230
            V   RAQ+ AIL    TV+ADDP L  R + L               P+R+I+D   +L
Sbjct: 182 DVQRHRAQAGAILSTSATVIADDPSLNVRWSELGTLIQDEYAQADVRQPIRVIIDSQNRL 241

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVT 288
           +   ++    L    I+               + I     + +  DL  L+  L   G+ 
Sbjct: 242 TPAYQVFH--LPGKTILARTMSGNEDWPDSVSQWIIPTRENNQQLDLTLLMRKLAENGIN 299

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344
            + VE GA +A   + ++LVD +ILY++  ++G         SPL       +       
Sbjct: 300 HIWVEAGAGLAGGLLEAQLVDCLILYQAPKLMGADSRSLMNLSPLTAMNQTIDLNITDIR 359

Query: 345 YFGSDVCL 352
               DV +
Sbjct: 360 MVDCDVKI 367


>gi|223043509|ref|ZP_03613554.1| riboflavin biosynthesis protein RibD [Staphylococcus capitis SK14]
 gi|222442997|gb|EEE49097.1| riboflavin biosynthesis protein RibD [Staphylococcus capitis SK14]
          Length = 349

 Score =  308 bits (789), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 115/354 (32%), Positives = 175/354 (49%), Gaps = 12/354 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           RFM+ A++ ++   G T  NP V  ++VKDG ++G G     G  HAEVQAL+ AGE+A+
Sbjct: 3   RFMNYAIQLAKMVDGQTGINPPVGSVVVKDGRIVGLGAHLKKGDKHAEVQALDMAGEDAK 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
            AT YV+LEPC+H+G +PPC   IIE GIR+V+  V   D  ++ +G + L + GI V+ 
Sbjct: 63  DATIYVSLEPCTHHGSTPPCVNKIIEFGIRKVIYAV--KDTTLASKGDEILKEAGIEVEF 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
                       + T +      +T+K++ S D         S  IT    K  V+ LR 
Sbjct: 121 QFNENAAELYKDFFTAKRNSIPELTVKVSSSLDGKQATDSDESKWITNKEVKEDVYKLRH 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA+L G  T+ ADDP  T R+       P+R+IL    ++  + ++      +P+ I 
Sbjct: 181 EHDAVLTGRKTIDADDPLYTTRVQ--DGKHPIRVILSKSGQIDFEQQLF-ADTASPIWIY 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           TEN++  L      K+I II  +  D   +L  L  RG+  LLVE G  V   F+ S  +
Sbjct: 238 TENEN--LKNQSNDKHIEIICLEKCDSTAILKDLYQRGIGKLLVEAGPNVTSQFLQSHHL 295

Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           D +ILY +  +IG  G         + +      F  V       ++ L+   K
Sbjct: 296 DELILYLAPKLIGGSGKHQFYKTDQVIDLPEATQFEIVYSKLINQNIKLKLRKK 349


>gi|160885546|ref|ZP_02066549.1| hypothetical protein BACOVA_03546 [Bacteroides ovatus ATCC 8483]
 gi|156109168|gb|EDO10913.1| hypothetical protein BACOVA_03546 [Bacteroides ovatus ATCC 8483]
          Length = 351

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 110/346 (31%), Positives = 169/346 (48%), Gaps = 18/346 (5%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
            ++M   +  ++  +     NP+V  +IV +G +IG G     G  HAEV A+    +E 
Sbjct: 10  EKYMRRCIELAKNGLCNVPPNPTVGAVIVCNGRIIGEGYHIRCGEAHAEVNAIRSVKDES 69

Query: 67  -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
             + +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP   V+GRG+Q L   G  
Sbjct: 70  LLKHSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGRE 129

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG--MAGCGSVPITGFISKNQ 182
           +   ++E E +  +  ++T     R +ITLK A S D  I         + ++  ++   
Sbjct: 130 VTVGILEEECQSLIRRFITFNTLHRPYITLKWAESADRFIDIERTSGMPLILSSPLTSML 189

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  RA++DAI+VG  T L D+P LT R      H+P+R++LD    L  D +I      
Sbjct: 190 VHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDLQIFDGN-- 245

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
            P ++ TE   P         NI  I  D     L++++ +L  R + SLLVEGG+ +  
Sbjct: 246 VPTLVFTEKKQPART------NITYISIDFNHNPLEQIMEVLYQRKIQSLLVEGGSQLLQ 299

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
           SFIN  L D   + +    +   G+ +P        +        F
Sbjct: 300 SFINDELWDEAYIEKCPSRL-HSGVQAPQMNDNFSYSIEEHFERQF 344


>gi|118602777|ref|YP_903992.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567716|gb|ABL02521.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 349

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 102/356 (28%), Positives = 175/356 (49%), Gaps = 20/356 (5%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             S  D + M  AL+ +        +NP V C+IVK   +I +G     G  H E+ AL+
Sbjct: 4   TFSKNDTQNMVIALKLASQGKYGVKSNPMVGCVIVKHTKIIAKGYHQTFGKAHGEINALQ 63

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +   +A+GAT YVTLEPCSH G++P CAQ II  G+++V++ + DP+  V+G+G+  L  
Sbjct: 64  QINHQAQGATFYVTLEPCSHQGKTPSCAQAIIHSGVKKVIIAMLDPNPLVNGKGVVMLEN 123

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +   ++E++       ++      +  +  KIA+S D    M+   S  IT  +++
Sbjct: 124 AGIEVKIGLLENDALTLNQGFIKYMKTNKPFVRCKIAMSLDGKTSMSSGESKWITSEVTR 183

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS-KIIKT 239
             V  LRA   AI+ G GT++ D+P +T RL+ +   +P+R+++D   +++  S  I   
Sbjct: 184 LDVQKLRANHQAIMTGSGTIINDNPLMTVRLDNINL-TPLRVVIDSKNQITNTSLNIFNA 242

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
              AP +I                N   +     DL  +LT L  +G+ ++L+E G  + 
Sbjct: 243 D--APTLI------------LNPTNTKTLSSGKLDLGNVLTQLGNQGINNVLLEAGPKLI 288

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCL 352
            S I S L+D  I+Y + I++G          ++    +     V      +D+ +
Sbjct: 289 GSMIKSNLIDEFIIYMAPILMGSNANSMLNLVIKNMAHKIKLNIVDVRMVSNDIKI 344


>gi|89055912|ref|YP_511363.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Jannaschia sp. CCS1]
 gi|88865461|gb|ABD56338.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Jannaschia sp. CCS1]
          Length = 365

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 134/356 (37%), Positives = 187/356 (52%), Gaps = 12/356 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DAR+M+ AL      +G    NP+V C++V++G V+GRG TA GG PHAEV AL +AG  
Sbjct: 3   DARWMALALSLGARGMGQVWPNPAVGCVLVREGRVVGRGWTARGGRPHAEVVALGQAGAL 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGA AYV+LEPC+H G++ PCA  +I+ G+ RVVV  +DPD RV+G G+  L   G+ V
Sbjct: 63  ARGACAYVSLEPCNHVGQTGPCASALIDAGVARVVVACEDPDPRVAGGGIARLRAAGVEV 122

Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              + +      H  +  R  E R  +TLK+A S D  I  A   S  ITG  ++ +VH 
Sbjct: 123 VVGVGAAEAERAHTGFFRRVREGRPMLTLKVATSLDGRIATASGESQWITGPDARRRVHG 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +RA+ DA+LVG GT  ADDP LT R  G     P+R+++     + +D  + +TA   PV
Sbjct: 183 MRARHDAVLVGAGTARADDPSLTVRGFG-DVPQPVRVVVSRRLDVPVDLALGRTARDVPV 241

Query: 246 IIVTENDDPVLALAFRKKNINII------YCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
            +V   D P  A A        +           D+   L  L   G+T +  EGG A+A
Sbjct: 242 WLVHGPDVPSAARAAWVAAGATLIESALGAGGQLDVGAALQRLGEAGLTRVFCEGGGALA 301

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVC 351
            S + + LVD + ++   +VIG  G PS     L        F   R +  G D  
Sbjct: 302 ASLLTADLVDELAVFSGGLVIGAEGTPSVGAMGLTGLAEAPRFTRERVEGVGPDAL 357


>gi|93007294|ref|YP_581731.1| riboflavin biosynthesis protein RibD [Psychrobacter cryohalolentis
           K5]
 gi|92394972|gb|ABE76247.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Psychrobacter cryohalolentis K5]
          Length = 370

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 122/366 (33%), Positives = 188/366 (51%), Gaps = 33/366 (9%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
              + D  FM  A+  ++  +     NP+V C+IV+   V+G+G     G PHAEV AL+
Sbjct: 26  SQDAKDHYFMMLAIEQAKLGLYTARPNPAVGCVIVQAEEVVGQGFHPKAGQPHAEVFALK 85

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +AG    GATAYVTLEPCSH GR+PPCA+ +IE G+ RVVV   DP+ +V+GRG++ L Q
Sbjct: 86  DAGIRTVGATAYVTLEPCSHTGRTPPCAKALIESGVIRVVVAGLDPNPQVAGRGVKLLEQ 145

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +   +++++ +     +L     +  ++ LKIA S D    MA   S  ITG  ++
Sbjct: 146 AGIAVSVGVLKTQAEALNKGFLKAMRNQMPYVRLKIATSLDGRTAMATGESKWITGPAAR 205

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----QEHSPMRIILDPHFKLSLDSK 235
             V  LRAQS AI+ G  TV+ D+P+L  R N L     +   P  +ILD   +L  D +
Sbjct: 206 EDVQKLRAQSGAIITGSETVIVDNPQLNVRSNQLGIAIEEVPHPKVVILDRRGRLKHDLQ 265

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVEG 294
                                +     +  + +Y    +L++LL +LV       +L+E 
Sbjct: 266 ---------------------SDYQLCRRPDTLYWREDNLRELLKVLVTEYQCYDVLIEA 304

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
           GA+VA SF+  +LVD +I+Y++  ++G+         PL     +  F     +  GSD+
Sbjct: 305 GASVAGSFLQQQLVDELIVYQAPCLLGQKARAMVDINPLSLAQ-QLRFDIQCHEQLGSDL 363

Query: 351 CLEYIG 356
            L  + 
Sbjct: 364 KLTLLP 369


>gi|163733978|ref|ZP_02141419.1| riboflavin biosynthesis protein ribD [Roseobacter litoralis Och
           149]
 gi|161392514|gb|EDQ16842.1| riboflavin biosynthesis protein ribD [Roseobacter litoralis Och
           149]
          Length = 366

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 129/358 (36%), Positives = 188/358 (52%), Gaps = 11/358 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           R+M+ AL   R  +G    NP+V C+IVK+  V+GRG T  GG PHAE QAL +AG +AR
Sbjct: 6   RYMALALSLGRRGLGRVWPNPAVGCVIVKEDRVVGRGWTQPGGRPHAETQALAQAGAQAR 65

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GA  YVTLEPC+H+G++PPCA  +++ G+ RV     DPD RV G G + L Q GI +  
Sbjct: 66  GADVYVTLEPCAHHGKTPPCAAALVKAGVARVFAATGDPDPRVHGAGFRALEQAGIHVQS 125

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++E++ +     +  R    R  +TLK+A S D  I      S  ITG  ++  VH LR
Sbjct: 126 GILEAQARRDNAGFFARVELDRPFMTLKLAGSFDGRIATGTGESKWITGRQARRVVHALR 185

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           A+ DA++VG GT   DDP LT R  G     P R+++     + L   + +TA   PVI+
Sbjct: 186 ARHDAVMVGAGTARKDDPALTVRDLG-TAWQPARVVISRRLDVPLMGVLARTATEVPVIL 244

Query: 248 VTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
               D DP L   ++     ++ C  +    D   ++  L G G+T +  EGG+A+A S 
Sbjct: 245 CHGKDADPQLIRTWQDLGAVLLPCAAKGGQLDPADVMRQLAGHGLTRIFCEGGSALAASL 304

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
             + LVD +I + + + IG  G+PS     L        +        GSD+   +  
Sbjct: 305 FEADLVDELIGFTAGLAIGAEGLPSIGALGLSNLSRAPRYGLRSTQRIGSDIMHIWER 362


>gi|110679096|ref|YP_682103.1| riboflavin biosynthesis protein ribD [Roseobacter denitrificans OCh
           114]
 gi|109455212|gb|ABG31417.1| riboflavin biosynthesis protein ribD [Roseobacter denitrificans OCh
           114]
          Length = 365

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 131/358 (36%), Positives = 187/358 (52%), Gaps = 11/358 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           R+M+ AL   R   G    NP+V C+IVKDG +IGRG T  GG PHAE QAL +A  +AR
Sbjct: 6   RYMALALSLGRRGFGRVWPNPAVGCVIVKDGRIIGRGWTQPGGRPHAETQALAQAAAQAR 65

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GA  YVTLEPC+H+G++PPCA+ ++  G+ RV     DPD RV G G + L Q GI +  
Sbjct: 66  GADVYVTLEPCAHHGKTPPCAEALVRAGVARVFAATGDPDPRVHGAGFRALEQAGIHVQS 125

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++E++ +     +  R    R  +TLK+A S D  I      S  ITG  ++  VH LR
Sbjct: 126 GILEAQARRDNAGFFARVELDRPFMTLKLAGSFDGRIATGTGESKWITGPQARRVVHALR 185

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           A+ DA++VG GT   DDP LT R  G     P R+++     + L   + +TA   PVI+
Sbjct: 186 ARHDAVMVGAGTARKDDPALTVRDLG-TAWQPARVVISRRLDVPLMGVLARTATEVPVIL 244

Query: 248 VTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
               D DP L   ++     ++ C  R    D   ++  L G G+T +  EGG+A+A S 
Sbjct: 245 CHGKDADPQLIRTWQDLGAVLLPCAARGGQLDPADVMRQLAGHGLTRIFCEGGSALAASL 304

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
             + LVD +I + + + IG  G+PS     L +      +        G DV   +  
Sbjct: 305 FEADLVDELIGFTAGLAIGAEGLPSIGALGLSKLSRAPRYDLRSTQTVGPDVMHIWER 362


>gi|218264485|ref|ZP_03478318.1| hypothetical protein PRABACTJOHN_04018 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221978|gb|EEC94628.1| hypothetical protein PRABACTJOHN_04018 [Parabacteroides johnsonii
           DSM 18315]
          Length = 354

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 113/336 (33%), Positives = 178/336 (52%), Gaps = 20/336 (5%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            ++M+  +  +R   G T+ NP V  +IV  G +IG G     G  HAEV A+    +EA
Sbjct: 12  EKYMARCIELARGGEGNTAPNPMVGAVIVHKGKIIGEGFHRKCGEAHAEVNAVASVRDEA 71

Query: 68  --RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
             R +T YV+LEPCSHYG++PPCA+ II+ GI RVVV   DP   VSGRG++ L + G+ 
Sbjct: 72  LLRDSTIYVSLEPCSHYGKTPPCAELIIKKGIPRVVVGTLDPFPEVSGRGVRMLREAGVE 131

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP----ITGFISK 180
           +V  ++E E +    A++T Q+ KR ++ LK A S D  + +    +      ++   + 
Sbjct: 132 VVTGVLEEEARTLNPAFMTFQIRKRPYVYLKWAQSADGFMDVRREDATESPVLLSSAETL 191

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            +VH LR++  AI+VG  T L D+P LT R       SP+R++LD   KL   S ++   
Sbjct: 192 RRVHRLRSEVAAIMVGTRTALLDNPSLTVR--HWAGQSPVRVVLDRTLKLPAGSHLLD-- 247

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAV 298
            +   ++ T  +           N+  +  D     L ++L  L  + + SL+VEGGA +
Sbjct: 248 GMVRTLVFTAAEVESRP------NVEYVRIDFEQEVLPQVLQYLYEQNLNSLMVEGGAGL 301

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
             SF+++ L D   +  +  V+G  G+ +P   G L
Sbjct: 302 LESFLDAGLWDEAWVETAPAVLGA-GVKAPAVPGVL 336


>gi|163793213|ref|ZP_02187189.1| hypothetical protein BAL199_25529 [alpha proteobacterium BAL199]
 gi|159181859|gb|EDP66371.1| hypothetical protein BAL199_25529 [alpha proteobacterium BAL199]
          Length = 369

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 146/368 (39%), Positives = 204/368 (55%), Gaps = 11/368 (2%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M   + D R+M+ ALR +   VG T+ NP V C++V+DG ++GRG T  GG PHAE  AL
Sbjct: 1   MADEADDDRWMALALRLAHSAVGDTAENPPVGCVLVRDGRIVGRGRTGSGGRPHAEAVAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AG  ARGATA+VTLEPC+H+GR+PPCA  ++  G+ RVV  + DPD RV G G   L 
Sbjct: 61  AQAGNAARGATAFVTLEPCAHHGRTPPCADALVAAGVVRVVAAIGDPDPRVDGGGFATLR 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + G+ +   +   +       +L+R  + R  +TLKIA S D  I  A   S  ITG  +
Sbjct: 121 RAGVSVSVGVAAQQAATATTGFLSRVQDARPFVTLKIATSLDGRIATASGASRWITGTAA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H++RA+ DAILVGIGT LADDP LTCR  GL+E SP+R++LD   +L +DS + +T
Sbjct: 181 RRHAHVVRARQDAILVGIGTALADDPALTCRTPGLEERSPVRVVLDSGLRLPVDSDLART 240

Query: 240 ALLAPVIIVTE-NDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVE 293
           A   P  ++T        A A     + +           D+  +L  L GRG+  +LVE
Sbjct: 241 ARWVPTWVITSVGAGSGHARALTDLGVEVFGVARDAGGRPDVPAVLATLAGRGIGRVLVE 300

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSD 349
           GGA VA SF+ +  VD I  YR+ I+IG  G P+     +        F         +D
Sbjct: 301 GGATVARSFVAADAVDEIQWYRAPILIGGDGRPAVDALDVATPDGAPRFDRTDCISLDAD 360

Query: 350 VCLEYIGK 357
           +   Y  +
Sbjct: 361 MLETYRRR 368


>gi|291279486|ref|YP_003496321.1| bifunctional riboflavin biosynthesis protein RibD [Deferribacter
           desulfuricans SSM1]
 gi|290754188|dbj|BAI80565.1| bifunctional riboflavin biosynthesis protein RibD [Deferribacter
           desulfuricans SSM1]
          Length = 384

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 110/358 (30%), Positives = 180/358 (50%), Gaps = 11/358 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M   ++ +    G T TNP V  +IVKDG +IGRG     G  HAE+ A+ +A E   GA
Sbjct: 8   MKECVQLALLGKGYTKTNPIVGAIIVKDGKIIGRGYHEEYGKSHAEINAMNDAVEPLEGA 67

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
             YVTLEPCS +G++PPC   IIE  I+RV + V DP+ +++G+G+  L + G+ V    
Sbjct: 68  DLYVTLEPCSIHGKTPPCVDAIIENKIKRVFIGVVDPNPKIAGQGIIKLIEAGVEVFVGF 127

Query: 131 ESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           + E     +  +    + +  + TLK+A S D  I      S  IT   S+  VH +R+ 
Sbjct: 128 DEELCASIIEDFTKGVLNQEPYYTLKLAQSLDGKIATKTGDSKWITSESSRVYVHYIRSV 187

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           SDAILVG+ TV  D+P L  RL    E +P +++LDP F++  +S + K      ++ V 
Sbjct: 188 SDAILVGVNTVNRDNPRLDVRL-IKAEVNPYKVVLDPFFEIDTNSFLCKNYSNKLILFVK 246

Query: 250 ENDDPVLALAFRKKNINIIY----CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           +            + + I+      +  DL  +   L  + + ++L+EGG+  A  FI++
Sbjct: 247 DIKSKEKYDKLISEGVEIVKDESIGELFDLNFISKYLYSKNILNVLIEGGSETAGRFIDA 306

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
             VD ++ + +  +IG     S ++   +EK             +F +D+ +    K+
Sbjct: 307 GKVDKVLFFIAPKIIGGRDAVSSIKGDGVEKIQDAIEVKMAEVKHFDNDILISGKIKD 364


>gi|71066695|ref|YP_265422.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Psychrobacter arcticus 273-4]
 gi|71039680|gb|AAZ19988.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Psychrobacter arcticus 273-4]
          Length = 351

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 124/366 (33%), Positives = 190/366 (51%), Gaps = 33/366 (9%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
              + D  FM  A+  ++  +  T  NP+V C+IV+   V+G+G     G PHAEV AL+
Sbjct: 7   SQDAKDRYFMMLAIEQAKLGLYSTRPNPAVGCVIVQAEEVVGQGFHPKVGQPHAEVFALK 66

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +AG  A GATAYVTLEPCSH GR+PPCA+ +IE G+ RVVV   DP+ +V+GRG++ L Q
Sbjct: 67  DAGIRAVGATAYVTLEPCSHTGRTPPCAKALIESGVIRVVVAGLDPNPQVAGRGVRLLEQ 126

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +   ++ ++ ++    +L     +  ++ LKIA S D    MA   S  ITG  ++
Sbjct: 127 AGIEVTVGILTAQAEVLNKGFLKAMRTQMPYVRLKIATSLDGRTAMATGESKWITGPAAR 186

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----QEHSPMRIILDPHFKLSLDSK 235
             V  LRAQS AI+ G  TV+ D+P+L  R + L     Q   P  +ILD   +L  + +
Sbjct: 187 EDVQKLRAQSGAIITGSETVIVDNPQLNVRSSQLGIAPEQVPHPKVVILDRRERLQYNLQ 246

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGVTSLLVEG 294
                                +     +  +I+Y    +L +LL +L        +L+E 
Sbjct: 247 ---------------------SDYQLCRRTDILYWRDDNLTELLKVLVSEYQCYDVLIEA 285

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
           GA+VA SF+  +LVD +I+Y++  ++G+         PL     +  F   R +  GSD+
Sbjct: 286 GASVAGSFLQQQLVDELIVYQAPCLLGQQARSMVDINPLSLAQ-QLRFDIKRYEQLGSDM 344

Query: 351 CLEYIG 356
            L  + 
Sbjct: 345 KLTLMP 350


>gi|167626935|ref|YP_001677435.1| pyrimidine reductase/pyrimidine deaminase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167596936|gb|ABZ86934.1| pyrimidine reductase/pyrimidine deaminase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 356

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 109/361 (30%), Positives = 171/361 (47%), Gaps = 14/361 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + +  +M  AL  +       S NP V C+IVK+G +I  G     G  HAE+ AL++
Sbjct: 1   MKNIENYYMQQALTLANRGRLSVSPNPMVGCIIVKNGAIISEGWHEAVGEAHAEIYALKK 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG++A+GATAYVTLEPC H+GR+PPC   +I  GI++VVV   DP+  V+G+G+Q L   
Sbjct: 61  AGDKAKGATAYVTLEPCCHHGRTPPCTDALIRAGIQKVVVATLDPNPLVAGKGIQKLKDA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   +++ + +     +   Q  ++  +  K A+S D  I + G  S  I+   +  
Sbjct: 121 GIEVKVGILQKQAQEQNKIFFHYQKTQKPFVYAKWAMSLDGKIAVNGNDSKKISSKEAFV 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
             H LR   DAIL+G  T++ D+P L  R+   ++  P+R I+  +      S  +    
Sbjct: 181 DTHQLRNICDAILIGKQTLIDDNPGLDVRIQLSKKKHPVRFIISNNLSEVDKSWKVLDQN 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297
            A  I V       +A       I             L  LL  +   G+TSLLVEGG  
Sbjct: 241 HAKTIFVCSKISTQVANELDNIGIEYWLLPTFKGQVCLDSLLNKMGQTGITSLLVEGGKK 300

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
              +FIN +L++    Y S +VI              ++  +     + G D+ +    K
Sbjct: 301 TLENFINQKLINEFATYLSPVVIAGCN---------PKEKLIFQDVSFLGEDLLINSYFK 351

Query: 358 N 358
            
Sbjct: 352 E 352


>gi|213018626|ref|ZP_03334434.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|212995577|gb|EEB56217.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 399

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 132/392 (33%), Positives = 187/392 (47%), Gaps = 48/392 (12%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           MS AL+ +   +G  + NP+V C+IVK+G+VIG G T  GG PHAEV AL+ A +    A
Sbjct: 1   MSIALKLAEKSLGSVAPNPAVGCIIVKNGMVIGEGYTGIGGRPHAEVVALQNAKDLTHSA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPC H+G + PC   II+ GI+RVV+   DPD RVSG G++ L + GI +   +
Sbjct: 61  TMYVTLEPCCHFGVTEPCTAEIIKSGIKRVVIAAIDPDSRVSGGGIKALKEAGIEVEQGI 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M+ E ++    + T +   R  I  KIA + D  I      S  IT   ++N VH LRA+
Sbjct: 121 MQKEAEVLNVGFFTTKEFHRPFIACKIATTLDGKIATFTGDSKWITSEDTRNWVHELRAK 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL------- 242
            DAI++G  T++ DDP LTCRL GL++ SP+R+I+D   KL  +  I KTA         
Sbjct: 181 YDAIMIGSSTLINDDPLLTCRLPGLEDRSPIRLIIDSQGKLKEEHNIAKTADTLYNHDLS 240

Query: 243 -----------------------------------APVIIVTENDDPVLALAFRKKNINI 267
                                                  ++T N             +N 
Sbjct: 241 KEPTAYLSMSFQRVTLESRKKEEEWIPVSRTGMTGGSTWVITNNKVKKKIKNINYLVVNS 300

Query: 268 IYCDCRDLKKLLTIL-VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
                  LK + + L    G+T LLVEGG  +    +   L+D +I+ RS  ++G    P
Sbjct: 301 NNAGKVCLKDMASKLVSEIGITRLLVEGGGILITELLKHNLIDRLIICRSGKILGNDATP 360

Query: 327 SPLEEGYLEKN----FMCVRRDYFGSDVCLEY 354
              + G    N    F  V+   F  DV   +
Sbjct: 361 FIGDLGIQSINNCHKFKKVKIIEFSEDVVEVW 392


>gi|124010107|ref|ZP_01694767.1| riboflavin biosynthesis protein RibD [Microscilla marina ATCC
           23134]
 gi|123983875|gb|EAY24280.1| riboflavin biosynthesis protein RibD [Microscilla marina ATCC
           23134]
          Length = 355

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 106/354 (29%), Positives = 171/354 (48%), Gaps = 20/354 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D +FM  AL  +    G  S NP V C+IV    +IG G   + G  HAEV A+     +
Sbjct: 14  DEKFMQRALDLAVLGAGKVSPNPMVGCVIVHQEQIIGEGWHQFYGKAHAEVNAVNAVENK 73

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           A    AT YVTLEPC+H G++PPCA  +I+  ++RVVVC  DP   V G+GL+ L   GI
Sbjct: 74  ALLSEATVYVTLEPCAHQGKTPPCADLLIKHQVKRVVVCNQDPHPLVGGKGLEKLRTAGI 133

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++E++GK     + T  +++R ++  K A + D  I      S  I+  +S+  V
Sbjct: 134 EVTVGILEAQGKEVNKRFFTGLLKQRPYVIFKWAETADGFIARKNYESKWISNKMSRMLV 193

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  R + D+I+VG  T   D+P+L  RL   +  +P R+++D   KL  +  +     L 
Sbjct: 194 HKWRTEEDSIMVGSNTARYDNPQLNARL--WKGRNPARVVIDRRLKLPSNLHLYNQQQLT 251

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            +               +  N+  +  D    L+++L  L  + + S++VEGG+ + +  
Sbjct: 252 FIY--------NQLSRSQASNLEFVKLDEDKFLEEVLLDLYEKKIRSVIVEGGSTLINLL 303

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
           I   + D   +++S   +   GI +P   G+L      V  +    D   EY  
Sbjct: 304 IEQNMWDEARVFKSTQTVFHEGIKAPKVHGHL------VNTERIMDDFYYEYRP 351


>gi|315503254|ref|YP_004082141.1| riboflavin biosynthesis protein ribd [Micromonospora sp. L5]
 gi|315409873|gb|ADU07990.1| riboflavin biosynthesis protein RibD [Micromonospora sp. L5]
          Length = 353

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 118/367 (32%), Positives = 175/367 (47%), Gaps = 28/367 (7%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59
           M   S D   M  A+  +   +G TS NP V C+++  DG V+G G  AY G PHAE+ A
Sbjct: 1   MASVSVDEA-MRRAIELAARGLGATSPNPVVGCVLLDTDGEVVGEGFHAYAGGPHAEIVA 59

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           L +AG  ARG TA VTLEPC H GR+ PC+  +I  G+ RVV+ V DP+  V+  G   L
Sbjct: 60  LAQAGTRARGGTAVVTLEPCDHTGRTGPCSHALIAAGVSRVVIAVPDPNP-VASGGAATL 118

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              G+ +   +   E +    A+LT       ++  K A + D     A   S+ IT   
Sbjct: 119 RAAGVQVALGVRAQEAEAGNVAWLTSMRRGWPYVIWKYAATLDGRSAAADGTSMWITSEA 178

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTC---RLNGLQEHSPMRIILDPHFKLSLDSK 235
           ++  VH LR   DA+L G+GTVL DDP LT    R   +    P+R+++D   +   D++
Sbjct: 179 ARIDVHALRGTVDAVLAGVGTVLTDDPRLTARNLRDGTMAIRQPLRVVVDSSGRTPADAR 238

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
           +   A  A   I T               +        DL  LL  L  RGV + L+EGG
Sbjct: 239 VRDGA--ARTWIAT------------AAEVGAGPDGRVDLPALLAELHHRGVRAALLEGG 284

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDV 350
             +A +F+ + LVD I+ Y +  ++G G  P+ L +  +       +         G D+
Sbjct: 285 PTLAGAFLAAGLVDRIVGYVAPKLLGAG--PTALLDAGVSTIADAIDLEITDVTRVGPDL 342

Query: 351 CLEYIGK 357
            +  + +
Sbjct: 343 RITALPR 349


>gi|325292542|ref|YP_004278406.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-5-phosphoribosylamino uracil reductase
           [Agrobacterium sp. H13-3]
 gi|325060395|gb|ADY64086.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-5-phosphoribosylamino uracil reductase
           [Agrobacterium sp. H13-3]
          Length = 413

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 172/412 (41%), Positives = 232/412 (56%), Gaps = 55/412 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M   + D +FM+ A+  S  H G T TNPSV C++VKD  +I   VTA GG PHAE QAL
Sbjct: 1   MTSRADDEKFMARAIEVSLRHQGQTETNPSVGCVLVKDRKIIAEAVTAIGGRPHAERQAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           E AGE ARGATAYVTLEPCSH+G++PPCA  ++E G+ RVVV VDDPD RVSGRG   L 
Sbjct: 61  EIAGEAARGATAYVTLEPCSHWGKTPPCANALVEYGVARVVVAVDDPDERVSGRGYSILR 120

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI+V+  ++  +GK  L  YLTRQV+KR H+ LK+A+S D MIG  G G V ITG  +
Sbjct: 121 EAGIVVETGLLREQGKRALAGYLTRQVKKRPHVILKLAISSDGMIGRQGEGQVAITGPQA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           ++ VH LRA+ D ILVGI T +ADDPELT R+ GL++ SP+RI+LD  F+L L SK++KT
Sbjct: 181 RHAVHELRARCDCILVGIRTAIADDPELTVRIAGLEDRSPVRIVLDRKFELPLTSKLVKT 240

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL------------------------ 275
           A   PV++       +  ++  +  I+       DL                        
Sbjct: 241 ARDLPVVVAALPPSALPGISPSRGEIDSPRPTRSDLVSVTHSPTFGVGKNAALSISPREG 300

Query: 276 ---------------------KKLLTILVGRGVTSLL---------VEGGAAVAHSFINS 305
                                 ++L       +  +L         VEGGA  A SF+ +
Sbjct: 301 EVPGRAEGGSHDRRQPLIDAGVEILEAPTLENLLHILAERGMSELLVEGGAFAAKSFLEA 360

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
            LVD I+L+ S +V+GEGGI +PL    +  +++ V    +G D C +Y   
Sbjct: 361 DLVDRIMLFESPVVVGEGGIETPLSRADIPGDYVLVSETAYGPDRCFDYERP 412


>gi|325478589|gb|EGC81701.1| riboflavin biosynthesis protein RibD [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 357

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 111/353 (31%), Positives = 164/353 (46%), Gaps = 20/353 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M      +    G   TNP V  ++ KDG +I RG        HAE+       E A GA
Sbjct: 7   MRECFDLALKGSGKVLTNPMVGAVLYKDGKIIARGYHKSYYDDHAEIDCFNNLNESAEGA 66

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T  V LEPCSH+G+ PPC   +I   ++RVV+   D + +V   G+  L + GI ++  +
Sbjct: 67  TLVVNLEPCSHFGKHPPCVDEVIRRKVKRVVISNTDTNPKV--DGISKLKEAGIEVITGV 124

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E EG+     +       R  + LK A S D  I      S  I+   S+  VH LR+ 
Sbjct: 125 LEEEGEKLNEKFFFNMKYNRPLVALKYAQSLDGKIATENFDSKWISNEESRLFVHKLRSD 184

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DAI+VG  T+  D+P LT R+       P R+I+    KL L  ++ K       II T
Sbjct: 185 YDAIIVGRNTLETDNPRLTSRIT--NGVDPFRVIVTSKAKLDLGYEVFKENSDNKTIIAT 242

Query: 250 END----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
            +     + V  L  + KN ++      DL  LL  +    + S+LVEGG+ + +SF+ +
Sbjct: 243 NSKIDLGEGVKVLTLKDKNGSV------DLNDLLDRIYELNIGSVLVEGGSVLNNSFLEA 296

Query: 306 RLVDSIILYRSQIVI-GEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVCLE 353
            LVD I  + + IV+ G+    + + +G       K F       FGSDV  E
Sbjct: 297 DLVDKIYQFMAPIVVSGKNSRSAFVGKGAKLIKDAKRFRIDEIKRFGSDVMFE 349


>gi|89255521|ref|YP_512882.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314040|ref|YP_762763.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Francisella tularensis subsp. holarctica OSU18]
 gi|156501455|ref|YP_001427520.1| riboflavin biosynthesis protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167010294|ref|ZP_02275225.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254366949|ref|ZP_04982986.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp.
           holarctica 257]
 gi|254368485|ref|ZP_04984502.1| hypothetical protein FTAG_01328 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290954250|ref|ZP_06558871.1| riboflavin biosynthesis protein [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312314|ref|ZP_06803101.1| riboflavin biosynthesis protein [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89143352|emb|CAJ78519.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp.
           holarctica LVS]
 gi|115128939|gb|ABI82126.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Francisella tularensis subsp. holarctica OSU18]
 gi|134252776|gb|EBA51870.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp.
           holarctica 257]
 gi|156252058|gb|ABU60564.1| riboflavin biosynthesis protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|157121379|gb|EDO65580.1| hypothetical protein FTAG_01328 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 355

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 107/323 (33%), Positives = 160/323 (49%), Gaps = 5/323 (1%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + D  +M  AL  +       S NP V C+IVK+G +I  G     G  HAEV AL +
Sbjct: 1   MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALTK 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A ++A+GATAYVTLEPC H GR+PPC   II+ GI++V++   DP+ +V+G+G++ L   
Sbjct: 61  AVDKAKGATAYVTLEPCCHCGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E + +     +   Q  K+  +  K A+S D  I +    S  I+   +  
Sbjct: 121 GITVEVGLLEKQAQELNKIFFHYQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSHQAFV 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
             H LR   DAIL+G  T++ D+P L  R+N  +     R IL  H      +  +    
Sbjct: 181 NTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHSTRFILANHLTTINHNWRVLDQR 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297
            A  I V       +A    +  I             L  LL  +   G+TSLLVEGG  
Sbjct: 241 HAKTIFVCSKISARVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGKIGITSLLVEGGNK 300

Query: 298 VAHSFINSRLVDSIILYRSQIVI 320
             +SFIN +LV+    Y + ++I
Sbjct: 301 TLNSFINQKLVNEFYTYLAPVII 323


>gi|90579822|ref|ZP_01235630.1| Putative pyrimidine deaminase/pyrimidine reductase [Vibrio angustum
           S14]
 gi|90438707|gb|EAS63890.1| Putative pyrimidine deaminase/pyrimidine reductase [Vibrio angustum
           S14]
          Length = 374

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 113/368 (30%), Positives = 181/368 (49%), Gaps = 20/368 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            ++ D R M  A++ ++     T+ NP+V C+I     ++G G     G PHAEV AL++
Sbjct: 2   FTNLDTRLMLRAIQLAKRGCFTTAPNPNVGCVIANGDEILGEGFHYRAGEPHAEVFALKQ 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RV+  + DP+  V+GRG++ L + 
Sbjct: 62  AGVRAKGATAYVTLEPCSHYGRTPPCAEALIKSGVSRVICAMVDPNPLVAGRGVEMLQKA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +   +++ E +    A++ +   K  ++ LK+A S D    +A   S  ITG  ++ 
Sbjct: 122 GVDVQVGLLKEEAQAINKAFIKQMTTKMPYVELKLASSLDGKTALANGESKWITGPYARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKL 230
            V   RAQ+ AIL    TV+ADDP L  R                   P+R+I+D   +L
Sbjct: 182 DVQRHRAQAGAILSTSATVMADDPSLNVRWSELGTQIQDEYPQADVRQPIRVIIDSQNRL 241

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVT 288
           +   ++    L    I+               + I     + +  DL  L+  L   G+ 
Sbjct: 242 TPAYQLFH--LPGETILARAEIGNEDWPDSVSQWIIPTRENSQQLDLTLLMRKLAENGIN 299

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344
            + VE GA +A   + ++LVD +ILY++  ++G         SPL       +       
Sbjct: 300 HIWVEAGAGLAGGLLEAQLVDCLILYQAPKLMGADSRSLMNLSPLTAMDQVIDLNITDIR 359

Query: 345 YFGSDVCL 352
               DV +
Sbjct: 360 MVDCDVKI 367


>gi|218531424|ref|YP_002422240.1| riboflavin biosynthesis protein RibD [Methylobacterium
           chloromethanicum CM4]
 gi|218523727|gb|ACK84312.1| riboflavin biosynthesis protein RibD [Methylobacterium
           chloromethanicum CM4]
          Length = 376

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 138/363 (38%), Positives = 193/363 (53%), Gaps = 11/363 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D R M  AL   R ++G T  NPSV  ++V +G ++G+ VTA GG PHAE  AL  AG
Sbjct: 13  ALDRRAMRLALALGRRNLGRTWPNPSVGAVVVAEGRIVGQAVTAVGGRPHAEPLALAMAG 72

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGAT YVTLEPCSH+GR+PPC    I  GI RVV  ++DPD RV+GRG   L   GI
Sbjct: 73  EAARGATLYVTLEPCSHHGRTPPCTDATIAAGIARVVTAIEDPDPRVAGRGHAGLRAAGI 132

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++  E       + +R    R  + LK+A ++D     +    + ITG ++   V
Sbjct: 133 TVETGLLREEAARDHRGHFSRVTRGRPSLHLKLARTRDGFAAPSTGERLKITGSVADGAV 192

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           HL RA +DAI+VGIGT  ADDP LT RL GL E SP+RI+LD   +L+  S +++ A   
Sbjct: 193 HLWRAHADAIMVGIGTARADDPSLTVRLPGLAERSPLRIVLDSTLRLNPASHLVRGARDL 252

Query: 244 PVIIVTENDDPVLALAFRKK-NINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAA 297
           P +++T    P  A        + I +         DL   L  L  RG+T +  EGG A
Sbjct: 253 PTLVLTGRGAPAHARRMLASFGVEIAFVPTDAEGRIDLPAALKALAERGLTRICSEGGPA 312

Query: 298 VAHSFINSRLVDSIILYRSQIVIGE-GGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLE 353
           +A +     L+D+  L    + +GE GG+P+    L     + +   V    +G D  + 
Sbjct: 313 LADTLAAHDLIDACTLITGSVTLGEAGGLPALGANLARRLADGSLSVVETRDYGPDTAVT 372

Query: 354 YIG 356
           Y  
Sbjct: 373 YER 375


>gi|221140247|ref|ZP_03564740.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Staphylococcus aureus subsp. aureus str. JKD6009]
          Length = 347

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 115/354 (32%), Positives = 168/354 (47%), Gaps = 14/354 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +FM  A++ +    G T  NP V  +IVK+G ++G G     G  HAEVQAL+ A + A 
Sbjct: 3   QFMDYAIQLANMVQGQTGVNPPVGAVIVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           GAT Y+TLEPCSH+G +PPC   II+C I +VV      D  +   G + L   GI V+ 
Sbjct: 63  GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDETLRAHGIEVEC 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + +         +   + ++   IT+K++ S D         S  IT    K  V+ LR 
Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA+L G  TV  DDP+ T R+      +P+++IL     +  + +I +     P+ I 
Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIY 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           TEN +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  +
Sbjct: 238 TENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293

Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           D  ILY +  +IG  G         + E      F  V  +    +V L    K
Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347


>gi|254447932|ref|ZP_05061396.1| riboflavin biosynthesis protein RibD [gamma proteobacterium
           HTCC5015]
 gi|198262358|gb|EDY86639.1| riboflavin biosynthesis protein RibD [gamma proteobacterium
           HTCC5015]
          Length = 363

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 112/355 (31%), Positives = 171/355 (48%), Gaps = 17/355 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE---EA 67
           M+ AL+ +   +  T +NP V C+I +   V+  G     G  HAEV+AL+   E   + 
Sbjct: 1   MARALQLAAKGLYSTRSNPRVGCVIARGERVLAEGYHQRPGEGHAEVRALQALPESESDL 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
             ATAYVTLEPCSHYG++ PC++ +I+ GI RVV  + DP+  V+G GL  L Q G+ + 
Sbjct: 61  STATAYVTLEPCSHYGKTGPCSEALIKAGIGRVVAAMVDPNPDVAGSGLARLQQAGVEVG 120

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++ESE +     ++ R       + LK+A S D    +A   S  IT   ++   H  
Sbjct: 121 SGLLESEARSLNPGFIQRMESGFPWVRLKMAASLDGRTALASGESQWITEAPARLDGHRW 180

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQE-----HSPMRIILDPHFKLSLDSKIIKTAL 241
           RA++DAI+ G+ TVLAD+  LT R +  Q        P+R++LD   +   D+ ++  A 
Sbjct: 181 RARADAIVTGVETVLADNARLTPRADLPQGCSSASEPPLRVVLDSQLRTPADAALLGEAG 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAA 297
              +I+  +  D     A           +      DL  +L  L   GV     E GA 
Sbjct: 241 RV-LILHRDGADSPRLRALLDAGAECAAIESSEKGLDLPSVLRYLGAAGVNECHFECGAR 299

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSD 349
           +A S +   LVD ++ Y + ++IG    P     L+    +K F  V     G D
Sbjct: 300 LAGSLLEEGLVDELLYYLAPVLIGSEAKPIAEFSLQALSEKKAFKVVEERRMGRD 354


>gi|227537349|ref|ZP_03967398.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242852|gb|EEI92867.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 350

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 107/348 (30%), Positives = 171/348 (49%), Gaps = 17/348 (4%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
            R+M   L  +    G  S NP V  +IV +  +IG G T+  G PHAEV A+++  ++ 
Sbjct: 5   ERYMQRCLELALLGAGTVSPNPMVGAVIVHENKIIGEGYTSPYGGPHAEVNAIQQVKDQY 64

Query: 67  -------ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                     +  YV+LEPC+H+G++PPCA  I++  +R+V +   DP  +V+G+GL  L
Sbjct: 65  PDSADRLLAESDMYVSLEPCAHFGKTPPCANLIVKHNLRKVYIACMDPFAQVNGKGLGIL 124

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            Q GI +   ++E E       + TR  + R ++ LK A + D  +         I+   
Sbjct: 125 QQAGIEVEVGLLEKEALWLNRRFFTRVRQNRPYVILKWAETADGYMAKNTDEQAWISNEA 184

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           SK  VH  R++ DAILVG  T L D+P LT R    + ++P R+++D    +   + I  
Sbjct: 185 SKQLVHRWRSEEDAILVGTRTALIDNPSLTVR--EWEGNNPKRVLIDKQLSVPESAAIFS 242

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
                 V    + D        R K I +   D    + +L  L    + S+++EGGA  
Sbjct: 243 EDADTIVFNAVKTD-----WQGRIKYIELENYDLYLPQNILYQLYLMDIQSIIIEGGAKT 297

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
              FI++ L D   + RS  V+ EGGI +P+ EG L++       D++
Sbjct: 298 LQLFIDAGLWDEARVIRS-KVLWEGGIKAPVVEGELKEQQAVASDDFY 344


>gi|254449430|ref|ZP_05062867.1| riboflavin biosynthesis protein RibD [Octadecabacter antarcticus
           238]
 gi|198263836|gb|EDY88106.1| riboflavin biosynthesis protein RibD [Octadecabacter antarcticus
           238]
          Length = 359

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 129/359 (35%), Positives = 189/359 (52%), Gaps = 19/359 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK----DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           M  AL   R  +G    NP+V C+IV+     G VIGRG TA GG PHAE +AL+    +
Sbjct: 1   MGMALSLGRRGLGRVWPNPNVGCVIVRPCENGGRVIGRGWTADGGRPHAETRALDSI--D 58

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GATAYVTLEPC+H+ ++PPC   +I   + RVV+   DPD RV+G+G+  L   GI +
Sbjct: 59  AAGATAYVTLEPCAHHAKTPPCVDALIAANVSRVVIATGDPDPRVAGKGIAILRAAGIDV 118

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  + E E ++ +  +L R  E R  +TLK+A S D  I  A   S  ITG  ++ +VH 
Sbjct: 119 MIGVREDEARVDMAGFLLRITENRPLVTLKLASSFDGRIAAATGESKWITGPDARRKVHA 178

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +RA  DA+LVG GTV ADDP LT R  G     P+RI+      +   + ++ T   AP+
Sbjct: 179 MRAAHDAVLVGAGTVRADDPTLTVREMGA-VRQPVRIVASGRLDMGA-ANLLATINYAPL 236

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            +    +  V A  +  +    + CD +    D   ++  L   G+T +  EGG ++A S
Sbjct: 237 WLCHGAN--VDAQKWVDQGAKSLPCDLQGREIDPVDMMHKLAAAGLTRVFCEGGGSLAAS 294

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
            + + LVD I+ + + IV+G  G PS     L+       F  V     G+D+   +  
Sbjct: 295 LLGAGLVDEIVGFTAGIVLGAEGTPSIGAMGLDRLADAPRFDLVETTRIGADIMHRWRR 353


>gi|159037490|ref|YP_001536743.1| riboflavin biosynthesis protein RibD [Salinispora arenicola
           CNS-205]
 gi|157916325|gb|ABV97752.1| riboflavin biosynthesis protein RibD [Salinispora arenicola
           CNS-205]
          Length = 353

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 123/369 (33%), Positives = 183/369 (49%), Gaps = 27/369 (7%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59
           M   S D   M  A+  +   +G TS NP V C+++   G V+G G  AY G PHAE+ A
Sbjct: 1   MAGVSVDEA-MRRAVELAARGLGTTSPNPVVGCVLLDPGGRVVGEGFHAYAGGPHAEIVA 59

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           L +AGE ARG TA VTLEPC H GR+ PC+  +++ GI RVV+ V DP+ R +  G   L
Sbjct: 60  LAQAGERARGGTAVVTLEPCDHTGRTGPCSTALVQAGIARVVIAVPDPN-RAASGGAATL 118

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   +  +E +    A+LT       ++  K A + D     A   S+ IT  +
Sbjct: 119 RAAGIRVDLGVRAAEAEAGNVAWLTSTRRGWPYVIWKYAATLDGRSAAADGTSMWITSEV 178

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTC---RLNGLQEHSPMRIILDPHFKLSLDSK 235
           ++  VH LR   DA+L G+GTVLADDP LT    R   L    P+R+++D   +    ++
Sbjct: 179 ARMDVHALRGTVDAVLAGVGTVLADDPRLTVRNLRDGSLAIRQPLRVVVDSTGRTPPGAR 238

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
           +   A  AP  I T  +            + +      +L  LL  L  RGV + LVEGG
Sbjct: 239 VRDDA--APTWIATAEE------------VGVDPEGRVELAGLLAALHQRGVRAALVEGG 284

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
             +A +F+ + LVD I+ Y +  ++G G  P+ L E  +      +  +       +  +
Sbjct: 285 PRLAGAFLAAGLVDKIVGYVAPRLLGAG--PAALTEAGVTTITEAIDCEVVD----VTQV 338

Query: 356 GKNLCLQEL 364
           G +L +  L
Sbjct: 339 GPDLRITAL 347


>gi|270295600|ref|ZP_06201801.1| riboflavin biosynthesis protein RibD [Bacteroides sp. D20]
 gi|270274847|gb|EFA20708.1| riboflavin biosynthesis protein RibD [Bacteroides sp. D20]
          Length = 351

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 111/336 (33%), Positives = 174/336 (51%), Gaps = 23/336 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++S + ++M   ++ ++  +  T+ NP V  +IV DG +IG G     G  HAEV A+  
Sbjct: 1   MNSEEEKYMLRCIQLAQNGLCNTAPNPMVGAVIVCDGKIIGEGYHVRCGEAHAEVNAIRS 60

Query: 63  AGE--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             +    + +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP  +V+GRG+Q L 
Sbjct: 61  VKDTSLLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCRDPFSKVAGRGIQKLK 120

Query: 121 QKG-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG--MAGCGSVPITGF 177
             G  ++  ++E+E +  +  ++T    +R +ITLK A S D  I         V ++  
Sbjct: 121 DAGREVIVGVLETECRQLIRRFITFHTLRRPYITLKWAESSDRYIDYSRTDGKPVILSSP 180

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
           ++   VH  RA+  AILVG  T   D+P L  R       SP+RI+LD   KLS    + 
Sbjct: 181 LTSMLVHKKRAEHSAILVGTRTAELDNPGLNVR--HWYGRSPVRIVLDRQQKLSPSLHLF 238

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLV 292
             +   P ++ TE     L         N+ Y    D     L +++ +L  RG+ SLLV
Sbjct: 239 DGS--VPTLVFTEIPHAPLP--------NVEYLPVSDYRQNILPEIMEMLYTRGLQSLLV 288

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
           EGG+    SFI++ L D I +  +  ++   G+ +P
Sbjct: 289 EGGSQTLQSFIDAGLWDEIFVEEAPHLL-HSGVKAP 323


>gi|257877850|ref|ZP_05657503.1| riboflavin biosynthesis protein RibD [Enterococcus casseliflavus
           EC20]
 gi|257812016|gb|EEV40836.1| riboflavin biosynthesis protein RibD [Enterococcus casseliflavus
           EC20]
          Length = 358

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 114/361 (31%), Positives = 172/361 (47%), Gaps = 12/361 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG--EE 66
            +M  A+  ++     T TNP V  +IVK+  VI +G     G PHAE  A+E+    E+
Sbjct: 4   EYMRLAIAEAKKGRYQTFTNPLVGAVIVKEQRVIAKGAHLVYGQPHAERNAIEQCHFSED 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
              +T YVTLEPC+H G+ PPC Q II+ GI++VV+   DP+  V+G+G Q+L ++GI +
Sbjct: 64  LINSTLYVTLEPCNHQGKQPPCTQLIIDSGIKKVVIGQLDPNPIVAGQGKQFLEEQGIDV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  + E+  +     Y      +R ++ LK A++ D  I         ITG      VH 
Sbjct: 124 LVGIEETAVRRLNPHYNFYHQHQRPYVALKQAITLDGRIAHDALTRSAITGSAVWQNVHQ 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-IKTALLAP 244
            R     ILVG  TVL DDP L   +       P+RI+LD   +      + +     AP
Sbjct: 184 ERGDYQGILVGSQTVLTDDPTLLTTVE--TSFPPIRIVLDRRGRTLSQPHLALFADDSAP 241

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           V I T+       ++    ++++I  +   +  LL  L  R V SL VEGGAA+  +F+ 
Sbjct: 242 VWIFTQQ----TTVSDLPAHVSVIQLEELTIVSLLKELAARQVQSLYVEGGAAIHDAFLA 297

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLE--KNFMCVRRDYFGSDVCLEYIGKNLCLQ 362
           S L    I Y +   +G   + S   E   +  +    V     G DVC+       C Q
Sbjct: 298 SGLWQESITYVAPKFLGGNSLASFTSERTPKQLQQLTEVTVTAVGEDVCIRGRRPEECSQ 357

Query: 363 E 363
           +
Sbjct: 358 D 358


>gi|168043725|ref|XP_001774334.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674326|gb|EDQ60836.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 521

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 94/374 (25%), Positives = 168/374 (44%), Gaps = 20/374 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +SS D + +  A   +    GLT+ +P+  C+I      +G G     G   AEV A+E 
Sbjct: 34  LSSDDTQHLLRAAELAESSAGLTAPHPNFGCVIAHGPKSVGEGFLYAQGTKSAEVLAVER 93

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+ ATAY+ LEP   +G      + + + G+ RVV+ +  P   + G+ +  L Q 
Sbjct: 94  AGELAKNATAYLNLEPGDCHGD-ASAVRALRQAGVSRVVIGISHPLQHLHGKAISALRQG 152

Query: 123 GIIVDRMME-------------SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC 169
           G+ V+   +                ++    +L R      +  LK A++ D  I  +  
Sbjct: 153 GVHVEVGGQNLLECGSSTQEALKACQLVNAPFLFRAANSMPYSILKYAITVDGKIATSTG 212

Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229
            S  ++   S+ +V   RA+SDA++VG  TV  D+P LT R  G   + P+RI++     
Sbjct: 213 HSYWVSSTQSRKRVFETRARSDAVIVGGNTVRRDNPRLTTRQEG--GNLPVRIVMSRCLN 270

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
           L  D+ +   +    +++  +  +P        K + ++  D    + ++     RG  S
Sbjct: 271 LPKDANLWDVSTTQTIVMTQKGANPGFQKILASKGVEVVEFDVLTPRAVMEHCYDRGFLS 330

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           +L E G  +A   I S  +  ++ + S  +IG    P+P+ E  + +    ++     SD
Sbjct: 331 VLWECGGTLAAPAIASGAIQKVMAFISPKIIGGITAPTPVGELGMAEMTQALQL----SD 386

Query: 350 VCLEYIGKNLCLQE 363
           V  E IG ++ +  
Sbjct: 387 VAFEQIGPDMLMTG 400


>gi|302866839|ref|YP_003835476.1| riboflavin biosynthesis protein RibD [Micromonospora aurantiaca
           ATCC 27029]
 gi|302569698|gb|ADL45900.1| riboflavin biosynthesis protein RibD [Micromonospora aurantiaca
           ATCC 27029]
          Length = 353

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 118/367 (32%), Positives = 175/367 (47%), Gaps = 28/367 (7%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59
           M   S D   M  A+  +   +G TS NP V C+++  DG V+G G  AY G PHAE+ A
Sbjct: 1   MASVSVDEA-MRRAIELAVRGLGATSPNPVVGCVLLDTDGEVVGEGFHAYAGGPHAEIVA 59

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           L +AG  ARG TA VTLEPC H GR+ PC+  +I  G+ RVV+ V DP+  V+  G   L
Sbjct: 60  LAQAGTRARGGTAVVTLEPCDHTGRTGPCSHALIAAGVSRVVIAVPDPNP-VASGGAATL 118

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              G+ +   +   E +    A+LT       ++  K A + D     A   S+ IT   
Sbjct: 119 RAAGVQVALGVRAQEAEAGNVAWLTSMRRGWPYVIWKYAATLDGRSAAADGTSMWITSEA 178

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTC---RLNGLQEHSPMRIILDPHFKLSLDSK 235
           ++  VH LR   DA+L G+GTVL DDP LT    R   +    P+R+++D   +   D++
Sbjct: 179 ARIDVHALRGTVDAVLAGVGTVLTDDPRLTARNLRDGTMAIRQPLRVVVDSSGRTPADAR 238

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
           +   A  A   I T               +        DL  LL  L  RGV + L+EGG
Sbjct: 239 VRDGA--ARTWIAT------------AAEVGAGPDGRVDLPALLAELHHRGVRAALLEGG 284

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDV 350
             +A +F+ + LVD I+ Y +  ++G G  P+ L +  +       +         G D+
Sbjct: 285 PTLAGAFLAAGLVDRIVGYVAPKLLGAG--PTALLDAGVSTIADAIDLEITDVTRVGPDL 342

Query: 351 CLEYIGK 357
            +  + +
Sbjct: 343 RITALPR 349


>gi|258424182|ref|ZP_05687064.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9635]
 gi|257845803|gb|EEV69835.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9635]
          Length = 347

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 114/354 (32%), Positives = 169/354 (47%), Gaps = 14/354 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +FM  A++ +    G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A 
Sbjct: 3   QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           GAT Y+TLEPCSH+G +PPC   II+C I +VV      D  ++  G + L   GI V+ 
Sbjct: 63  GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLNTHGDETLRDHGIEVEC 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + +         +   + ++   IT+K++ S D         S  IT    K  V+ LR 
Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA+L G  TV  DDP+ T R+      +P+++IL     +  + +I +     P+ I 
Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIY 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           TEN +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  +
Sbjct: 238 TENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293

Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           D  ILY +  +IG  G         + E      F  V  +    +V L    K
Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347


>gi|325299195|ref|YP_004259112.1| riboflavin biosynthesis protein RibD [Bacteroides salanitronis DSM
           18170]
 gi|324318748|gb|ADY36639.1| riboflavin biosynthesis protein RibD [Bacteroides salanitronis DSM
           18170]
          Length = 356

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 113/350 (32%), Positives = 173/350 (49%), Gaps = 18/350 (5%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D +++S  ++ ++  +  T  NP V  +IV    +IG G     G  HAEV A+    
Sbjct: 2   TQDEKYISRCIQLAKNGLCNTPPNPMVGAVIVYQDRIIGEGYHIRCGEGHAEVNAIASVK 61

Query: 65  EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           +E   R +T YV+LEPCSHYG++PPCA  II  GI RVVV   DP   VSGRG+Q L   
Sbjct: 62  DESLLRQSTLYVSLEPCSHYGKTPPCADLIIRKGIPRVVVGCTDPFPLVSGRGIQKLRDA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG--MAGCGSVPITGFIS 179
           G+ +   ++E E K  +  ++T  +++R +ITLK A S D  I         V ++  ++
Sbjct: 122 GVEVKVGVLEQECKDLIRRFVTFNLKQRPYITLKWAQSADGFIDVLRQEGTPVKLSSPLT 181

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
              VH LRA+  AILVG  T L D+P LT R       +P+R+++D    L    ++   
Sbjct: 182 SMYVHKLRAEHQAILVGRKTALLDNPSLTVR--EWYGKNPLRLVIDRDLSLPASLRLFDG 239

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCD-CRD-LKKLLTILVGRGVTSLLVEGGAA 297
           +   P  + T  +           N+  +  D  +D L ++   L    V SLLVEGG+ 
Sbjct: 240 S--TPTWVFTSKEKASRP------NLTYVRLDFGQDILPQIAQALCENKVQSLLVEGGST 291

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
           +  SFI+  + D I    +  V+G  G+P+P     +   +        G
Sbjct: 292 LLQSFIDRGMWDEIYAEHTSAVLG-KGVPAPAIPSGIPVGYSIRDNSVIG 340


>gi|283471035|emb|CAQ50246.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 347

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 114/354 (32%), Positives = 168/354 (47%), Gaps = 14/354 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +FM  A++ +    G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A 
Sbjct: 3   QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           GAT Y+TLEPCSH+G +PPC   II+C I +VV      D  +   G + L   GI V+ 
Sbjct: 63  GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDETLRDHGIEVEC 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + +         +   + ++   IT+K++ S D         S  IT    K  V+ LR 
Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA+L G  TV  DDP+ T R+      +P+++IL     +  + +I +     P+ I 
Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIY 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           TEN +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  +
Sbjct: 238 TENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293

Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           D  ILY +  +IG  G         + E      F  V  +    +V L    K
Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347


>gi|18976434|ref|NP_577791.1| riboflavin-specific deaminase [Pyrococcus furiosus DSM 3638]
 gi|18891968|gb|AAL80186.1| riboflavin-specific deaminase [Pyrococcus furiosus DSM 3638]
          Length = 354

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 110/327 (33%), Positives = 169/327 (51%), Gaps = 20/327 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D +FM  ALR +R   GLT+ NP V  ++VKD  +IG G     G  HAEV A+E+A  +
Sbjct: 3   DEKFMKLALRLARKGEGLTNPNPMVGAVLVKDNKIIGTGWHKRFGDKHAEVNAIEDAKRK 62

Query: 67  ---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
                GAT YVTLEPCSH+G+ PPCA  IIE GI RVV+ + DP+  VSGRG++ L + G
Sbjct: 63  GYTIEGATLYVTLEPCSHWGKQPPCADRIIEEGISRVVIAMVDPNPLVSGRGIKKLKEAG 122

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + +   ++E E K     ++     K   +++K+A++ D  I      S  IT   ++ +
Sbjct: 123 VEVKVGVLEEEAKKLNEIFVKYITTKIPFVSIKLALTLDGFIATQNFKSKWITDEKARGE 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK---IIKT 239
           V  LR +  AI+VG  T++ D+P L CR+ G  E    ++ILD   K++   K    ++ 
Sbjct: 183 VQKLRRRHMAIMVGANTIIQDNPRLDCRIKGCTEK--FKVILDSQGKVADFIKKGHKLRV 240

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
                VI+ T+  +    +               +  ++L  L   G+ S+L+EGG  +A
Sbjct: 241 FENGKVIVFTKRPEKFKGICEAY--------PITEPFEILKKLGEIGIDSVLIEGG-RIA 291

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP 326
             F+     D + L+    + G G  P
Sbjct: 292 GEFL--NFADKLYLFYGPKIFGRGIKP 316


>gi|326563101|gb|EGE13374.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis
           12P80B1]
          Length = 350

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 117/364 (32%), Positives = 177/364 (48%), Gaps = 37/364 (10%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63
            D  +M  A+  ++  +  T  NP+V C++VKD +VIG+G     G PHAE+ AL +A  
Sbjct: 9   QDIYYMQLAIAEAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKA 68

Query: 64  -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
            G + +GATAYVTLEPCSH GR+PPCA  +I   +RRVVV   DP+ +V+G G++ L   
Sbjct: 69  QGFDTKGATAYVTLEPCSHTGRTPPCADALIAANLRRVVVASLDPNPKVAGNGIKKLQNA 128

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI ++  + + +       +L        ++ LK A S D    MA   S  ITG  ++ 
Sbjct: 129 GIEVLVGVCDQQAAALNLGFLKAMRMGLPYVRLKTASSLDGRTAMASGESKWITGIEARE 188

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----HSPMRIILDPHFKLSLDSKI 236
            V  LRAQS AI+ G GT++AD+P LT R   L         P  +I+D   +L      
Sbjct: 189 DVQRLRAQSAAIITGSGTIIADNPALTVRSKQLGVDLHMLPKPKVVIVDRRNRL------ 242

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGVTSLLVEGG 295
                         +D     +  R   +        DL  LL  L        +L+E G
Sbjct: 243 --------------SDSDNYQVLNRDDTLIW----RNDLMSLLKTLVSQYACYDVLIEAG 284

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCL 352
           + ++ +FI   LVD +I+Y++  ++G+   P     L++   +  F     D  G+D+ L
Sbjct: 285 SELSGAFITEGLVDELIVYQAPCILGQDARPMFACQLDQLVQQYRFGLHSADIIGNDIRL 344

Query: 353 EYIG 356
            Y  
Sbjct: 345 IYRS 348


>gi|315924110|ref|ZP_07920336.1| riboflavin biosynthesis protein RibD [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622512|gb|EFV02467.1| riboflavin biosynthesis protein RibD [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 374

 Score =  306 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 111/361 (30%), Positives = 180/361 (49%), Gaps = 13/361 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             FM  AL  +R  +G TS NP V C++V++G+V+  G     G  HAE  AL    ++ 
Sbjct: 14  EAFMRRALALARQGMGHTSPNPMVGCVVVQNGVVVAEGYHERVGGYHAERNALTHCEKDL 73

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
             A  YVTLEPC HYG++PPC + IIE GI RV V   D + +V+GRG++ L   GI +V
Sbjct: 74  SDADLYVTLEPCCHYGKTPPCTEIIIERGIGRVFVGSLDVNPKVAGRGVKILEAAGIEVV 133

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++E++ +     +      +   +  K A++ D  I  A   +  ++G  S+ QV  +
Sbjct: 134 TGILETKCRKLNEVFYHYMTMRTPFVVSKYAMTLDGKIACASGDAKWVSGEASRAQVQRM 193

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R Q   I+VGIGTV+ADDP L CR+       P+RI+ D +  + L S+I++TA   PVI
Sbjct: 194 RKQYSGIMVGIGTVMADDPMLNCRIEA--GVDPVRIVCDSNLHIPLASRIVQTAGDIPVI 251

Query: 247 IVT--ENDDPVLALAFRKKNINIIYCD---CRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           +           A A +   + ++        DL  L+ +L  R + S+L+EGGA +  +
Sbjct: 252 VACTETAAASAKATALQAAGVTVLPAGDGTRVDLNILMRLLGRREIDSVLLEGGATLNAA 311

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIG 356
              + +V+ ++ + +  ++G    P P+    +           V     G D+ +    
Sbjct: 312 AFEAGVVNKVVAFIAPKLVGGAAAPPPVGGAGIPCMADAIVLTSVETGRCGDDLWVSGYP 371

Query: 357 K 357
            
Sbjct: 372 D 372


>gi|314933920|ref|ZP_07841285.1| riboflavin biosynthesis protein RibD [Staphylococcus caprae C87]
 gi|313654070|gb|EFS17827.1| riboflavin biosynthesis protein RibD [Staphylococcus caprae C87]
          Length = 349

 Score =  306 bits (783), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 115/354 (32%), Positives = 174/354 (49%), Gaps = 12/354 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           RFM+ A++ ++   G T  NP V  ++VKDG ++G G     G  HAEVQAL+ AGE A+
Sbjct: 3   RFMNYAIQLAQMVDGQTGINPPVGSVVVKDGRIVGLGAHLKKGDKHAEVQALDMAGENAK 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
            AT YV+LEPC+H+G +PPC   IIE GIR+V+  V   D  ++ +G + L + GI V+ 
Sbjct: 63  DATIYVSLEPCTHHGSTPPCVNKIIEFGIRKVIYAV--KDTTLASKGDEILKEAGIEVEF 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
                       + T +      +T+K++ S D         S  IT    K  V+ LR 
Sbjct: 121 QFNENAAELYKDFFTAKRNSIPELTVKVSSSLDGKQATDSDESKWITNKEVKEDVYKLRH 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA+L G  T+ ADDP  T R+       P+R+IL    ++  + ++      +P+ I 
Sbjct: 181 EHDAVLTGRKTIDADDPLYTTRVQ--DGKHPIRVILSKSGQIDFEQQLF-ADTASPIWIY 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           TEN++  L      K+I II  +  D   +L  L  RG+  LLVE G  V   F+ S  +
Sbjct: 238 TENEN--LKNQSNDKHIEIICLEKCDSTAILKDLYQRGIGKLLVEAGPNVTSQFLQSHHL 295

Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           D +ILY +  +IG  G         + +      F  V       ++ L+   K
Sbjct: 296 DELILYLAPKLIGGSGKHQFYKTDQVIDLPEATQFEIVYSKLINQNLKLKLRKK 349


>gi|320142810|gb|EFW34610.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 357

 Score =  306 bits (783), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 114/354 (32%), Positives = 168/354 (47%), Gaps = 14/354 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +FM  A++ +    G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A 
Sbjct: 13  QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 72

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           GAT Y+TLEPCSH+G +PPC   II+C I +VV      D  +   G + L   GI V+ 
Sbjct: 73  GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDETLRAHGIEVEC 130

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + +         +   + ++   IT+K++ S D         S  IT    K  V+ LR 
Sbjct: 131 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 190

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA+L G  TV  DDP+ T R+      +P+++IL     +  + +I +     P+ I 
Sbjct: 191 RHDAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIY 247

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           TEN +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  +
Sbjct: 248 TENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 303

Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           D  ILY +  +IG  G         + E      F  V  +    +V L    K
Sbjct: 304 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 357


>gi|57652067|ref|YP_186652.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus COL]
 gi|151221874|ref|YP_001332696.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161509986|ref|YP_001575645.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|258450849|ref|ZP_05698907.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A5948]
 gi|262050319|ref|ZP_06023164.1| riboflavin specific deaminase [Staphylococcus aureus D30]
 gi|262053078|ref|ZP_06025250.1| riboflavin specific deaminase [Staphylococcus aureus 930918-3]
 gi|284024817|ref|ZP_06379215.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Staphylococcus aureus subsp. aureus 132]
 gi|294849930|ref|ZP_06790669.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9754]
 gi|304380637|ref|ZP_07363309.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|57286253|gb|AAW38347.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus COL]
 gi|150374674|dbj|BAF67934.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368795|gb|ABX29766.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|257861473|gb|EEV84276.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A5948]
 gi|259159032|gb|EEW44104.1| riboflavin specific deaminase [Staphylococcus aureus 930918-3]
 gi|259161579|gb|EEW46176.1| riboflavin specific deaminase [Staphylococcus aureus D30]
 gi|269941247|emb|CBI49636.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus
           subsp. aureus TW20]
 gi|294823269|gb|EFG39699.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9754]
 gi|304340832|gb|EFM06760.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|315195936|gb|EFU26300.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Staphylococcus aureus subsp. aureus CGS01]
 gi|329314447|gb|AEB88860.1| Riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329727002|gb|EGG63459.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 347

 Score =  306 bits (783), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 114/354 (32%), Positives = 168/354 (47%), Gaps = 14/354 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +FM  A++ +    G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A 
Sbjct: 3   QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           GAT Y+TLEPCSH+G +PPC   II+C I +VV      D  +   G + L   GI V+ 
Sbjct: 63  GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDETLRAHGIEVEC 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + +         +   + ++   IT+K++ S D         S  IT    K  V+ LR 
Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA+L G  TV  DDP+ T R+      +P+++IL     +  + +I +     P+ I 
Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIY 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           TEN +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  +
Sbjct: 238 TENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293

Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           D  ILY +  +IG  G         + E      F  V  +    +V L    K
Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347


>gi|300769800|ref|ZP_07079680.1| riboflavin biosynthesis protein RibD [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300763251|gb|EFK60067.1| riboflavin biosynthesis protein RibD [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 350

 Score =  306 bits (783), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 106/355 (29%), Positives = 169/355 (47%), Gaps = 20/355 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M +     R+M   L  +    G  S NP V  +IV +  +IG G T+  G PHAEV A+
Sbjct: 1   MNMQ---ERYMQRCLELALLGAGTVSPNPMVGAVIVHENKIIGEGYTSPYGGPHAEVNAI 57

Query: 61  EEAGEE--------ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           ++  ++           +  YV+LEPC+H+G++PPCA  I++  +R+V +   DP  +V+
Sbjct: 58  QQVKDQYPDSADRLLEESDMYVSLEPCAHFGKTPPCANLIVKHNLRKVYIACMDPFAQVN 117

Query: 113 GRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS 171
           G+GL  L + GI +   ++E E       + TR  + R +I LK A + D  +       
Sbjct: 118 GKGLGILQEAGIEVEVGLLEKEALWLNRRFFTRVRQNRPYIILKWAETADGYMAKNTDEQ 177

Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231
             I+   SK  VH  R++ DAILVG  T L D+P LT R    +  +P R+++D    + 
Sbjct: 178 AWISNEASKQLVHKWRSEEDAILVGTRTALIDNPSLTVR--EWEGSNPKRVLVDKQLSVP 235

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
             + I        V    + D        R K I +   D    + +L  L    + S++
Sbjct: 236 ETAAIFSEDADTIVFNAVKTD-----WQGRIKYIELENYDLYLPQNILYQLYLMDIQSVI 290

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
           +EGGA     FI++ L D   + +S  V  E GI +P+ EG L++       D +
Sbjct: 291 IEGGAKTLQHFIDAGLWDEARVIKS-KVFWEDGIKAPVIEGELKEQHTVASDDVY 344


>gi|282917028|ref|ZP_06324786.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770846|ref|ZP_06343738.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus H19]
 gi|282319515|gb|EFB49867.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460993|gb|EFC08083.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus H19]
          Length = 347

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 114/354 (32%), Positives = 167/354 (47%), Gaps = 14/354 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +FM  A++ +    G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A 
Sbjct: 3   QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           GAT Y+TLEPCSH+G +PPC   II+C I +VV      D  +   G + L   GI V+ 
Sbjct: 63  GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDETLRDHGIEVEC 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + +         +   + ++   IT+K++ S D         S  IT    K  V+ LR 
Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA+L G  TV  DDP+ T R+      +P+++IL     +  + +I +     P+ I 
Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIY 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           TEN +    L     +I IIY    DL  +L  L  RGV +LLVE G      F+ S  +
Sbjct: 238 TENPN----LTTNLTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293

Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           D  ILY +  +IG  G         + E      F  V  +    +V L    K
Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIELPDANQFEIVHSELLNQNVKLTLRKK 347


>gi|239637909|ref|ZP_04678870.1| riboflavin biosynthesis protein RibD [Staphylococcus warneri
           L37603]
 gi|239596472|gb|EEQ79008.1| riboflavin biosynthesis protein RibD [Staphylococcus warneri
           L37603]
          Length = 347

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 114/354 (32%), Positives = 169/354 (47%), Gaps = 14/354 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +FM+ A++ ++   G T  NP V  ++VKDG ++G G     G  HAEVQAL+ A  EA 
Sbjct: 3   KFMNYAIQLAQMVDGQTGVNPPVGSVVVKDGRIVGIGAHLRKGDKHAEVQALDMAQSEAN 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           GAT YV+LEPC+H+G +PPC   IIE GI +V+  V   D  +  +G   L   GI V+ 
Sbjct: 63  GATIYVSLEPCTHHGSTPPCVDKIIEAGIHKVIYAV--KDTTLISKGDDILKNAGIEVEF 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
              +        + T +      +T+K++ S D         S  IT    K  V+ LR 
Sbjct: 121 QYNAVAAQLYQDFFTAKRNGIPELTVKVSASLDGKQATDDGESKWITNKEVKKDVYQLRH 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
             DA+L G  TV ADDP  T R+       P+R+IL    KL  + ++      +P+ I 
Sbjct: 181 SHDAVLTGRKTVEADDPLYTTRI--ADGKHPIRVILSKSGKLDFNQQLFHD-YASPIWIY 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           TEN +    L     N+ IIY +  D+K +L  L  +G+  LLVE G  +   F+ S  +
Sbjct: 238 TENKN----LKVDNSNVTIIYMEQCDIKSILKDLYQKGIGKLLVEAGPEITSEFLQSDHL 293

Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGK 357
           D ++LY +  +IG  G     +   +        F  V       ++ L    K
Sbjct: 294 DHLVLYFAPKIIGGSGKYQFFQTDQIVSLPDTTQFEIVNSTLIQQNIKLVLRKK 347


>gi|29349136|ref|NP_812639.1| riboflavin biosynthesis protein ribD [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29341044|gb|AAO78833.1| riboflavin biosynthesis protein ribD [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 339

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 106/346 (30%), Positives = 169/346 (48%), Gaps = 18/346 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--AR 68
           M   +  ++  +   + NP V  +IV DG++IG G     G  HAEV A+    ++    
Sbjct: 1   MRRCIELAKNGLCNVAPNPMVGAVIVCDGLIIGEGYHIRCGEAHAEVNAIRSVKDKSLLS 60

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-IIVD 127
            +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP  +V+GRG+Q L   G  +  
Sbjct: 61  RSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSQVAGRGIQKLRDAGREVTV 120

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQVHL 185
            ++E E +  +  ++T     R  ITLK A S D+ I +      P+  +  ++   VH 
Sbjct: 121 GVLEKECRYLIRRFITFNTLHRPFITLKWAESADHFIDVERTDGNPVVLSSPLTSMLVHK 180

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            RA++DAI+VG  T L D+P LT R       +P+RI+LD    L    ++       P 
Sbjct: 181 KRAETDAIMVGRRTALLDNPSLTVR--NWYGRNPVRIVLDRALSLPHSLRLFDGE--VPT 236

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           I+ T    P      +      I      L +++ +L  + + SLLVEGG+ +  SFI++
Sbjct: 237 IVFTAEKHPDK----KNVTYRTIEFTQDILPQIMKVLYQQKIQSLLVEGGSQLLQSFIDA 292

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
            L D + + +    +   G+ +P     +  NF      +F   + 
Sbjct: 293 ELWDEVYIEKCPCKL-NSGVKAP----EISDNFSYSTEKHFDRQIW 333


>gi|21283440|ref|NP_646528.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486593|ref|YP_043814.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|297207517|ref|ZP_06923953.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300911601|ref|ZP_07129045.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|21204881|dbj|BAB95576.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49245036|emb|CAG43497.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|296887853|gb|EFH26750.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300887022|gb|EFK82223.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus TCH70]
          Length = 347

 Score =  305 bits (782), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 114/354 (32%), Positives = 168/354 (47%), Gaps = 14/354 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +FM  A++ +    G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A 
Sbjct: 3   QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           GAT Y+TLEPCSH+G +PPC   II+C I +VV      D  +   G + L   GI V+ 
Sbjct: 63  GATIYITLEPCSHFGSTPPCVNKIIDCKITKVVYAT--KDNSLDTHGDETLRAHGIEVEC 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + +         +   + ++   IT+K++ S D         S  IT    K  V+ LR 
Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA+L G  TV  DDP+ T R+      +P+++IL     +  + +I +     P+ I 
Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIY 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           TEN +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  +
Sbjct: 238 TENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293

Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           D  ILY +  +IG  G         + E      F  V  +    +V L    K
Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347


>gi|300022486|ref|YP_003755097.1| riboflavin biosynthesis protein RibD [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524307|gb|ADJ22776.1| riboflavin biosynthesis protein RibD [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 368

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 141/362 (38%), Positives = 194/362 (53%), Gaps = 10/362 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYGGCPHAEVQALE 61
           S+FD   M+ ALR +   +G T  NPSV  +I  +  G ++ RGVTA GG PHAE QA+ 
Sbjct: 7   SAFDEEMMAIALRMAERGLGATMPNPSVGAVIADETTGEILARGVTAPGGRPHAETQAIA 66

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG+  RGAT YVTLEPCSH+GR+ PCA+ I+  G++R VV ++DPD RVSGRGL  L  
Sbjct: 67  AAGDRVRGATIYVTLEPCSHHGRTGPCAEAIVAAGLKRAVVAIEDPDPRVSGRGLDKLRD 126

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC-GSVPITGFIS 179
            G+ +V  +  +E +     ++ R  E+R   T+K+A+     I        + +T  ++
Sbjct: 127 AGLEVVRGVGAAEARRITRGHIVRITERRPFTTVKLALDGSGEIARGNGVSPIWVTAEMA 186

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +    LLRA  DAILVG  TV  DDPELTCRL GL + SP RIIL     +   +K++++
Sbjct: 187 RAHGMLLRAHYDAILVGSATVRDDDPELTCRLPGLIDRSPARIILSRSLDIPAGAKLVRS 246

Query: 240 ALLAPVIIVTEND-DPVLALAFRKKNINI----IYCDCRDLKKLLTILVGRGVTSLLVEG 294
           A   P  ++T  D DP          + I    I      L  ++  LVGRGVT LLVEG
Sbjct: 247 ASGVPTWMMTAPDSDPQKREQLTSHGVEIHDIPIVGQSLWLPAIMEALVGRGVTRLLVEG 306

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           G  +  SF  + LVD +ILY + +  G+      +E          V R   G D     
Sbjct: 307 GPRIWRSFAEASLVDEVILYMAGMP-GDDVAMDAIERQLGPVALSLVDRRTMGGDTMWRL 365

Query: 355 IG 356
             
Sbjct: 366 HR 367


>gi|326571732|gb|EGE21745.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis BC8]
 gi|326571813|gb|EGE21819.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis BC7]
 gi|326574353|gb|EGE24296.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis CO72]
          Length = 350

 Score =  305 bits (781), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 115/364 (31%), Positives = 177/364 (48%), Gaps = 37/364 (10%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63
            D  +M  A+  ++  +  T  NP+V C++VKD +VIG+G     G PHAE+ AL +A  
Sbjct: 9   QDIYYMQLAIAAAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKA 68

Query: 64  -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
            G + +GATAYVTLEPCSH GR+PPCA  +I   ++RVV+   DP+ +V+G G++ L   
Sbjct: 69  QGFDTKGATAYVTLEPCSHTGRTPPCADALIAADLKRVVIASLDPNPKVAGNGIKKLQNA 128

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI ++  + + +       +L        ++ LK A S D    MA   S  ITG  ++ 
Sbjct: 129 GIEVLVGVCDQQAAALNLGFLKAMRMGLPYVRLKTASSLDGRTAMASGESKWITGIEARE 188

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----HSPMRIILDPHFKLSLDSKI 236
            V  LRAQS AI+ G GT++AD+P LT R   L         P  +I+D   +L      
Sbjct: 189 DVQRLRAQSAAIITGSGTIIADNPALTVRSKQLGVDLHMLPKPKVVIVDRRNRL------ 242

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGVTSLLVEGG 295
                         +D     +  R   +        DL  LL  L        +L+E G
Sbjct: 243 --------------SDSDNYQVLNRDDTLIW----RNDLMSLLKTLVSQYACYDVLIEAG 284

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCL 352
           + ++ +FI   LVD +I+Y++  ++G+   P     L++   +  F     D  G+D+ L
Sbjct: 285 SELSGAFITEGLVDELIVYQAPCILGQDARPMFACQLDQLVQQYRFGLHSADIIGNDIRL 344

Query: 353 EYIG 356
            Y  
Sbjct: 345 IYRS 348


>gi|291287235|ref|YP_003504051.1| riboflavin biosynthesis protein RibD [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884395|gb|ADD68095.1| riboflavin biosynthesis protein RibD [Denitrovibrio acetiphilus DSM
           12809]
          Length = 387

 Score =  305 bits (781), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 107/349 (30%), Positives = 177/349 (50%), Gaps = 10/349 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M    + +    G T TNP V  ++     ++ RG     G PHAEV A++       G 
Sbjct: 12  MQECAQLALLGKGYTKTNPVVGAIVANQSEILSRGWHMAYGGPHAEVNAIDSCPVSTEGL 71

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
             YVTLEPCSH G++PPC + I++ GIRRV + V DP+  V+G+G+++L   G+ +    
Sbjct: 72  DLYVTLEPCSHSGKTPPCVEKIVKSGIRRVFIGVVDPNPLVAGKGVEYLKNHGVEVYVGY 131

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           ME      +  ++    EK+ + T K A + D  I  +   S  I+   S+   H +RA 
Sbjct: 132 MEDLCASIIEDFVKFITEKKPYYTFKTAQTLDGKIASSTGDSKWISSEASRTYTHYMRAV 191

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           SDAILVG+ TV+ADDPEL  R+    +  P +I+LDP  ++ LD K+++ +    + +  
Sbjct: 192 SDAILVGVNTVIADDPELNVRMV-KSDRDPFKIVLDPKGRMPLDRKLVENSADKLIYVTC 250

Query: 250 ENDDPVLALAFRKKNINIIYCDC-RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
                  AL  +  ++  +  D   DL  L   LV R + ++++EGG   A  F ++ LV
Sbjct: 251 AESRITEALRNKGADVITLGGDGSLDLNVLSDELVERSILNVMIEGGGTTAGKFFDAGLV 310

Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
           D + ++ + +++G  G  S +    +E          V+  +F  D+ +
Sbjct: 311 DKVNIFIAMMIMG--GSVSSVGGNGVENVAQAYKLKEVQSKHFEGDLMI 357


>gi|298248927|ref|ZP_06972731.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM
           44963]
 gi|297546931|gb|EFH80798.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM
           44963]
          Length = 383

 Score =  305 bits (781), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 119/367 (32%), Positives = 179/367 (48%), Gaps = 20/367 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE- 65
           D  FM  A+  +    G TS  P+V  +IV+D  VIGRG T+    PHAE+ AL EAG  
Sbjct: 3   DLEFMQQAIACAHSVEGHTSPRPAVGAVIVRDNRVIGRGATSPPYGPHAEIHALNEAGAT 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            A GA  Y TLEPC     +PPC + II  GIRRV++   DP+ RVSGRG+  L + GI 
Sbjct: 63  AASGADLYTTLEPCCIAIHTPPCTKAIIAAGIRRVIIGALDPNPRVSGRGVAQLREAGIN 122

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V  + + E    +  + T   + R ++T K A++ D  +      +  I+G  ++  VH
Sbjct: 123 VVTGIAQQETSALIRPFATYITQGRPYVTAKWAMTLDGKLATHTGDAHWISGPAARTWVH 182

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ-------EHSPMRIILDPHFKLSLDSKII 237
            LR + DAI++G GT  AD+P LT RL   Q          P+RI+L  + KL     ++
Sbjct: 183 QLRDRVDAIMIGAGTAHADNPLLTVRLTEAQRVHKRTPRQDPLRIVLSSYGKLGSHLHLL 242

Query: 238 KTALL-APVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLL 291
           +  L     ++V+E          R++ + +I          DL   L IL  +G+  LL
Sbjct: 243 QEQLAPGTCVMVSETSSLQQREDLRQRGVQVIEVPANKTGQVDLVAALNILAQKGIMHLL 302

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYF 346
           +EGG+ +  +     L+D +  + +  +IG  G PSP+    L           V     
Sbjct: 303 LEGGSNLLGTAFGHNLIDHVAAFIAPKLIGGAGSPSPIGGSGLAVMQHALRLQGVSIQTI 362

Query: 347 GSDVCLE 353
             D+ +E
Sbjct: 363 DEDLLIE 369


>gi|329964682|ref|ZP_08301736.1| riboflavin biosynthesis protein RibD [Bacteroides fluxus YIT 12057]
 gi|328525082|gb|EGF52134.1| riboflavin biosynthesis protein RibD [Bacteroides fluxus YIT 12057]
          Length = 349

 Score =  305 bits (781), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 110/331 (33%), Positives = 172/331 (51%), Gaps = 18/331 (5%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + + ++M   ++ ++  +   + NP V  +IV DG +IG G     G  HAEV A+    
Sbjct: 2   NTEEKYMRRCIQLAQNGLCNAAPNPMVGAVIVCDGKIIGEGYHIRCGEAHAEVNAIRSVK 61

Query: 65  EEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           E A  + +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP  +V+GRG+Q L   
Sbjct: 62  EPALLKKSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCRDPFSKVAGRGIQKLKDA 121

Query: 123 G-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA--GCGSVPITGFIS 179
           G  ++  ++E E K  +  ++T    +R +ITLK A S D  I +       V ++  ++
Sbjct: 122 GREVIVGVLEEECKSLIRRFITFHTLQRPYITLKWAESADKYIDLNRTNGSPVVLSSPLT 181

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
              VH  RA+  AI+VG  T   D+P L  R       SP+RI+LD    L     +   
Sbjct: 182 AMLVHKKRAEHKAIMVGTHTAWLDNPSLNIR--HWSGKSPVRIVLDKKQSLPASLHLFDG 239

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCD-CRD-LKKLLTILVGRGVTSLLVEGGAA 297
           +   P ++ TE     L       N+  +  D  RD L +++  L  RG+ SLLVEGG+ 
Sbjct: 240 S--VPTLVFTEMPHKPLP------NVEYLPIDYQRDILPQIMETLYKRGIQSLLVEGGSI 291

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
           +  SFI++ + D I +  +  ++   G+ SP
Sbjct: 292 LLQSFIDAGMWDEIFVEEAPNLL-HSGVKSP 321


>gi|256842978|ref|ZP_05548466.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus
           125-2-CHN]
 gi|256848647|ref|ZP_05554081.1| riboflavin biosynthesis protein [Lactobacillus crispatus MV-1A-US]
 gi|262045946|ref|ZP_06018910.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus
           MV-3A-US]
 gi|293381447|ref|ZP_06627444.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus
           214-1]
 gi|256614398|gb|EEU19599.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus
           125-2-CHN]
 gi|256714186|gb|EEU29173.1| riboflavin biosynthesis protein [Lactobacillus crispatus MV-1A-US]
 gi|260573905|gb|EEX30461.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus
           MV-3A-US]
 gi|290921994|gb|EFD98999.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus
           214-1]
          Length = 353

 Score =  305 bits (781), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 107/354 (30%), Positives = 170/354 (48%), Gaps = 9/354 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + D  +M  A++ ++  +  T  NP V  +IVKDG ++  G     G  HAE  A+ +
Sbjct: 1   MENSDEAYMQLAIQEAKKGLYQTWKNPMVGAVIVKDGNILATGHHIRYGYYHAERDAISK 60

Query: 63  AG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
              E+   +T YVTLEPCSHYG+ PPC+  I+   I+RVV+   DP   V+G+G+  L Q
Sbjct: 61  LTPEQLFNSTLYVTLEPCSHYGKQPPCSDLIVSSKIKRVVIAQVDPHQLVTGKGIAKLRQ 120

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
             I +   ++E + K     Y          ITLK AVS D  I  A      IT     
Sbjct: 121 HNIQVTVGVLEDQAKKLNKFYTYFYQHNHPWITLKQAVSLDYRINEAKNIRTQITNETVY 180

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-IKT 239
            +VH  RA   AI++G  T + D+P L   +    +  P+RII+D   +L     I + T
Sbjct: 181 QRVHRERANYQAIMIGSNTAIIDNPSLLTTVT--TDFPPIRIIVDRRGRLLNHLNIKLLT 238

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
             L+P  I T+N    LA     +NI+I       + +++  L    + S+ VEGG  +A
Sbjct: 239 DKLSPTWIFTQNTS--LAKTPHNENISIFLMKNASITEVIKKLTNEEIQSVYVEGGPTLA 296

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           ++ +    V+++I Y S I++G+ G          +     +R +    +  +E
Sbjct: 297 NALLAEGQVNNLITYISPILLGQKGK--LGISPSSKTTLHNLRAEKLDDNFRIE 348


>gi|227877508|ref|ZP_03995573.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Lactobacillus crispatus JV-V01]
 gi|227862901|gb|EEJ70355.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Lactobacillus crispatus JV-V01]
          Length = 356

 Score =  305 bits (781), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 107/354 (30%), Positives = 170/354 (48%), Gaps = 9/354 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + D  +M  A++ ++  +  T  NP V  +IVKDG ++  G     G  HAE  A+ +
Sbjct: 4   MENSDEAYMQLAIQEAKKGLYQTWKNPMVGAVIVKDGNILATGHHIRYGYYHAERDAISK 63

Query: 63  AG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
              E+   +T YVTLEPCSHYG+ PPC+  I+   I+RVV+   DP   V+G+G+  L Q
Sbjct: 64  LTPEQLFNSTLYVTLEPCSHYGKQPPCSDLIVSSKIKRVVIAQVDPHQLVTGKGIAKLRQ 123

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
             I +   ++E + K     Y          ITLK AVS D  I  A      IT     
Sbjct: 124 HNIQVTVGVLEDQAKKLNKFYTYFYQHNHPWITLKQAVSLDYRINEAKNIRTQITNETVY 183

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-IKT 239
            +VH  RA   AI++G  T + D+P L   +    +  P+RII+D   +L     I + T
Sbjct: 184 QRVHRERANYQAIMIGSNTAIIDNPSLLTTVT--TDFPPIRIIVDRRGRLLNHLNIKLLT 241

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
             L+P  I T+N    LA     +NI+I       + +++  L    + S+ VEGG  +A
Sbjct: 242 DKLSPTWIFTQNTS--LAKTPHNENISIFLMKNASITEVIKKLTNEEIQSVYVEGGPTLA 299

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           ++ +    V+++I Y S I++G+ G          +     +R +    +  +E
Sbjct: 300 NALLAEGQVNNLITYISPILLGQKGK--LGISPSSKTTLHNLRAEKLDDNFRIE 351


>gi|322434629|ref|YP_004216841.1| riboflavin biosynthesis protein RibD [Acidobacterium sp. MP5ACTX9]
 gi|321162356|gb|ADW68061.1| riboflavin biosynthesis protein RibD [Acidobacterium sp. MP5ACTX9]
          Length = 373

 Score =  305 bits (781), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 129/370 (34%), Positives = 187/370 (50%), Gaps = 17/370 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
           S D +FM  AL  +     L S NP V C+ V+DG +I  G   Y    HAE+ AL++A 
Sbjct: 2   SQDQQFMQRALELAESTTALASPNPQVGCVFVRDGKIIAEGFHLYEARDHAEIAALKQAE 61

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
             G +  G TAYVTLEPCSH+GR+ PCA  +I  GI R V+   D +  V G G+  L  
Sbjct: 62  ANGIDVAGDTAYVTLEPCSHHGRTGPCADVLIAAGISRCVIATLDANPVVRGNGVAKLEA 121

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV-----PIT 175
            GI +   ++E + +    A+          +TLK A+S D  +              +T
Sbjct: 122 AGIAVTVGVLEQKARTLNDAFAWSIRHNLPMVTLKAALSVDGKLAPPPSQRQRPEPHWLT 181

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM-RIILDPHFKLSLDS 234
           G  S+ +V  LR  SDAIL GIGTVLADDP LT R  GL    P+ RIILD H ++ + S
Sbjct: 182 GPESRAEVQRLRHASDAILTGIGTVLADDPTLTDR-TGLPRRRPLQRIILDAHLRIPVAS 240

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNIN---IIYCDCRDLKKLLTILVGRGVTSLL 291
           K++++A    +I   +N       A          +   D  DL+ +L+ L  R + S+L
Sbjct: 241 KLVESAADDLLIFCNQNAPQDRLTALEAAGAEIHQVPGTDRLDLRAILSTLHERKLLSVL 300

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE---EGYLEKNFMCVRRDYFGS 348
           +E G ++  +F+ + LV   IL+ +   +GEG +P   +      LE+    V R  FG 
Sbjct: 301 LEAGPSLNGAFLAAHLVQRAILFYADTELGEGALPFAEDLTNPHLLEQTMTHVTRTTFGP 360

Query: 349 DVCLEYIGKN 358
           D C+  + +N
Sbjct: 361 DGCVSGLLQN 370


>gi|257868250|ref|ZP_05647903.1| riboflavin-specific deaminase [Enterococcus casseliflavus EC30]
 gi|257874477|ref|ZP_05654130.1| riboflavin biosynthesis protein RibD [Enterococcus casseliflavus
           EC10]
 gi|257802364|gb|EEV31236.1| riboflavin-specific deaminase [Enterococcus casseliflavus EC30]
 gi|257808641|gb|EEV37463.1| riboflavin biosynthesis protein RibD [Enterococcus casseliflavus
           EC10]
          Length = 358

 Score =  305 bits (781), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 114/361 (31%), Positives = 172/361 (47%), Gaps = 12/361 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG--EE 66
            +M  A+  ++     T TNP V  +IVK+  VI +G     G PHAE  A+E+    E+
Sbjct: 4   EYMRLAIAEAKKGRYQTFTNPLVGAVIVKEQRVIAKGAHLVYGQPHAERNAIEQCHSSED 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
              +T YVTLEPC+H G+ PPC Q II+ GI++VVV   DP+  V+G+G ++L ++GI +
Sbjct: 64  LINSTLYVTLEPCNHQGKQPPCTQLIIDSGIKKVVVGQLDPNPIVAGQGKRFLEEQGIDV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  + E+  +     Y      +R ++ LK A++ D  I         ITG      VH 
Sbjct: 124 LVGIEETAVRRLNPHYNFYHQHQRPYVALKQAITLDGRIAHDALTRSAITGSAVWQNVHQ 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-IKTALLAP 244
            R     ILVG  TVL DDP L   +       P+RI+LD   +      + +     AP
Sbjct: 184 ERGDYQGILVGSQTVLTDDPTLLTTVE--TSFPPIRIVLDRRGRTLSQPHLALFVDDSAP 241

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           V I T+       ++    ++++I  +   +  LL  L  R V SL VEGGAA+  +F+ 
Sbjct: 242 VWIFTQQ----TTVSDLPAHVSVIQLEELTIVSLLKELAARQVQSLYVEGGAAIHDAFLA 297

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLE--KNFMCVRRDYFGSDVCLEYIGKNLCLQ 362
           S L    I Y +   +G   + S   E   +  +    V     G DVC+       C Q
Sbjct: 298 SGLWQESITYVAPKFLGGNSLASFTSERTPKQLQQLTEVTVTAVGEDVCIRGRRPEECSQ 357

Query: 363 E 363
           +
Sbjct: 358 D 358


>gi|320449997|ref|YP_004202093.1| riboflavin biosynthesis protein RibD [Thermus scotoductus SA-01]
 gi|320150166|gb|ADW21544.1| riboflavin biosynthesis protein RibD [Thermus scotoductus SA-01]
          Length = 383

 Score =  305 bits (781), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 107/375 (28%), Positives = 180/375 (48%), Gaps = 23/375 (6%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D RF+  AL+ +    G T  NP V  ++V++G V+G G     G  HAEV AL +AG
Sbjct: 9   ELDERFLRRALQLAERARGHTHPNPLVGAVLVREGRVVGEGYHPRAGEAHAEVYALRQAG 68

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           EEA+GAT YV+LEPC+H+GR+PPC+  +++ G+ RVV    DP+  ++  GL+ L   G+
Sbjct: 69  EEAQGATLYVSLEPCNHFGRTPPCSLALLQAGVARVVAAARDPNP-LAQGGLERLRAGGV 127

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++E+E +     +   Q + R  + LK A++ D  +      +  ++   S+   
Sbjct: 128 EVEAGLLEAEAQGQNEVFFHVQQKGRPFVLLKAALTLDGKVAALSGDARYVSSEESRRVA 187

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFKLSLD 233
              R     ++VG+GTVL DDP LT R    +             P++++LD   +    
Sbjct: 188 QAYRQWLPVVMVGVGTVLKDDPWLTVREPDFRPFPLMLEPPPLRDPVKVVLDTEGRTPPT 247

Query: 234 SKIIKTALLAP----VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGR 285
           ++I +           ++V +        A  +    ++          L   L +L+  
Sbjct: 248 ARIFQKGPRGEPARVYVLVGKGAPKDRLRALEEAGARVVELPREGGRVSLDGALHLLLEE 307

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI---PSPLEEGYLEKNFMCVR 342
           G+  +L+EGG  +A +F    LVD + L+ +  V+GEG        LE     K    VR
Sbjct: 308 GLDGILLEGGPRLAGAFWERGLVDKLALFVAPKVLGEGRGFLEGFALERMAEAKRLRLVR 367

Query: 343 RDYFGSDVCLEYIGK 357
           +++ G D+ LE   +
Sbjct: 368 KEWLGEDLWLEAYPE 382


>gi|255547562|ref|XP_002514838.1| riboflavin-specific deaminase, putative [Ricinus communis]
 gi|223545889|gb|EEF47392.1| riboflavin-specific deaminase, putative [Ricinus communis]
          Length = 600

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 97/367 (26%), Positives = 170/367 (46%), Gaps = 19/367 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGE 65
           DA F+  A   +    G TS +P+  C+I    G V G G     G   AEVQA+E AGE
Sbjct: 37  DAAFIKRAAELADKSAGCTSPHPNFGCVIATATGNVAGEGYLYAQGTKPAEVQAVEAAGE 96

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            ++GATAY+ LEP   +G     +  +++ GI RVVV +  P   + G  +  L   G+ 
Sbjct: 97  WSKGATAYLNLEPGDCHGDHTAVSS-LVQAGITRVVVGIRHPLRHLQGNAVHALRNHGLQ 155

Query: 126 VDRMMESE-----------GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           V+ + E               +     + R   +     LK A++ D  I  +   +  +
Sbjct: 156 VEVLGEDLQSKIIEDARKSCLLVNAPLIHRATSRVPFSVLKYAMTLDGKIAASSGHAAWV 215

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           +   S+N+V  LR++SDAI+VG  TV  D+P LT R  G  E+ PMRI++     L  ++
Sbjct: 216 SSRKSRNRVFELRSRSDAIIVGGNTVRRDNPRLTARHGG--EYMPMRIVMSQTLDLPEEA 273

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
            +     ++ +++               K + ++  +  + ++++     RG  S+L E 
Sbjct: 274 NLWDVCDVSTIVVTQRGARRSFQKLLASKGVEVVEFEILNPREVMEYFHDRGYLSILWEC 333

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           G  +A S I++ ++  +  + +  +IG    PSP+ E  + +    +       DVC E 
Sbjct: 334 GGTLAASAISAGVIHKVFAFVAPKIIGGKNAPSPVGELGMVEMTQALDLV----DVCYEQ 389

Query: 355 IGKNLCL 361
           +G ++ +
Sbjct: 390 VGPDMLI 396


>gi|33603318|ref|NP_890878.1| riboflavin biosynthesis protein ribd [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Bordetella bronchiseptica RB50]
 gi|33577442|emb|CAE34707.1| riboflavin biosynthesis protein ribd [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Bordetella bronchiseptica RB50]
          Length = 374

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 117/355 (32%), Positives = 175/355 (49%), Gaps = 15/355 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
           M  AL  +R  +  T+ NP V C+IV+DG V+G G T   G PHAEV AL EA   G   
Sbjct: 1   MRRALALARSVMYSTAPNPRVGCVIVRDGQVLGEGATQPPGGPHAEVCALREAAARGASL 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
            GAT YVTLEPCSH+GR+PPC   +      RVVV + DP+ RV+G+GL  L   GI + 
Sbjct: 61  AGATVYVTLEPCSHFGRTPPCVDALAAAAPARVVVAMGDPNPRVNGQGLARLRAAGIAVT 120

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
           + +   E       +  R       + LK+A S D    +    S  ITG  ++   H  
Sbjct: 121 EDVCRDEALELNAGFAARMSRGLPWVWLKLAASLDGRSALHNGVSQWITGEAARADGHHW 180

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA+S  +L G+GTVL DDP+L  R      H P + ++D  F++  D+++      A V+
Sbjct: 181 RARSGVVLTGMGTVLKDDPQLNAR-AVQTSHPPRKAVIDGRFEIPEDARLFDDG--AQVL 237

Query: 247 IVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           + T   D   A     +N  +I       D  DL  ++  L  + +  + VE GA ++ +
Sbjct: 238 VFTARSDAAKARRMADRNARVIELPGVRPDRVDLPAVMRWLASQEINEVHVEAGAGLSGA 297

Query: 302 FINSRLVDSIILYRSQIVIGEGG--IPSPLEEGYL-EKNFMCVRRDYFGSDVCLE 353
            +    VD +++Y + +++G+    +  PL E     + F        G+DV L 
Sbjct: 298 LLAEDCVDELLVYLAPVLLGDAAGMVRLPLLEHLDGARRFEFAELAPVGTDVRLR 352


>gi|312128288|ref|YP_003993162.1| riboflavin biosynthesis protein ribd [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778307|gb|ADQ07793.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 371

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 105/344 (30%), Positives = 166/344 (48%), Gaps = 12/344 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GE 65
            +M+ AL  ++    L   NP V C+IVK+G +IG+G     G  HAEV A+E+A   G 
Sbjct: 8   YYMNMALELAKKASPLVLPNPRVGCVIVKNGTIIGKGYHQKYGEKHAEVLAIEDAIKNGY 67

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
             + AT YV+LEPC H+G+ PPC + II+ GI++VV+   DP+  V+G+G+Q L Q GI 
Sbjct: 68  SLKNATMYVSLEPCCHFGKQPPCTEAIIKSGIKKVVIATRDPNPFVNGKGIQILKQHGIE 127

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V+ ++E E +     +         +I +K+A S D  I                  VH
Sbjct: 128 VVEGVLEKEAESINKDFFKYMKTGIPYIAIKVAHSIDGKIATPSNKRFLFNTEEENVFVH 187

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR +  A LV + TV++D+P L  R  G     P+R++LD   ++  +  I+KT+    
Sbjct: 188 SLRQKYMATLVSVNTVISDNPILNARY-GQIVRQPIRVVLDSKLRIPFECNIVKTSDEYS 246

Query: 245 VIIVTEN--DDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAA 297
             IV     +D        +K I II+         +L  + + L  + + S+LVEGG+ 
Sbjct: 247 TYIVCSENVNDTQKIDLLSQKGIKIIFAKSSEDGHLELSDVFSKLAQQKIVSVLVEGGSL 306

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341
           +  S +  R+ D        + IG       +     E  F  +
Sbjct: 307 LNFSLLKQRIADYWYSLIFNVFIGGQHTKGVVGSEGFEDLFPKL 350


>gi|326573500|gb|EGE23466.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis O35E]
          Length = 350

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 115/364 (31%), Positives = 177/364 (48%), Gaps = 41/364 (11%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63
            D  +M  A+  ++  +  T  NP+V C++VKD +VIG+G     G PHAE+ AL +A  
Sbjct: 9   QDIYYMQLAIAAAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKA 68

Query: 64  -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
            G + +GATAYVTLEPCSH GR+PPCA  +I   ++RVV+   DP+ +V+G G++ L   
Sbjct: 69  QGFDTKGATAYVTLEPCSHTGRTPPCADALIAADLKRVVIASLDPNPKVAGNGIKKLQNA 128

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI ++  + + +       +L        ++ LK A S D    MA   S  ITG  ++ 
Sbjct: 129 GIEVLVGVCDQQAAALNLGFLKAMRMGLPYVRLKTASSLDGRTAMASGESKWITGIEARE 188

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----HSPMRIILDPHFKLS--LDS 234
            V  LRAQS AI+ G GT++AD+P LT R   L         P  +I+D   +LS   D 
Sbjct: 189 DVQRLRAQSAAIITGSGTIIADNPALTVRSKQLGVDLHMLPKPKVVIVDRRNRLSDLDDY 248

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGVTSLLVE 293
           +++                                    DL  LL  L        +L+E
Sbjct: 249 QVLNRDDTLIW--------------------------RNDLMSLLKTLVSQYACYDVLIE 282

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDV 350
            G+ ++ +FI   LVD +I+Y++  ++G+   P     L++   +  F     D  G+D+
Sbjct: 283 AGSELSGAFITEGLVDELIVYQAPCILGQDARPMFACQLDQLVQQYRFGLHSADIIGNDI 342

Query: 351 CLEY 354
            L Y
Sbjct: 343 RLIY 346


>gi|319794177|ref|YP_004155817.1| riboflavin biosynthesis protein ribd [Variovorax paradoxus EPS]
 gi|315596640|gb|ADU37706.1| riboflavin biosynthesis protein RibD [Variovorax paradoxus EPS]
          Length = 375

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 171/368 (46%), Gaps = 19/368 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59
           MP    DA+ ++ ALR +   + LT  NP V C++   +G V+G+G T   G PHAEV A
Sbjct: 1   MPSHEQDAQHIATALRLASDALLLTDPNPRVGCVLCDAEGRVLGQGHTQKAGGPHAEVMA 60

Query: 60  LEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           L +A   G    GATAYVTLEPCSH+GR+ PC   +I  GI RVV  + DP+  V+G+G 
Sbjct: 61  LRDAAAQGHSVEGATAYVTLEPCSHHGRTGPCCDALIAAGIERVVASLADPNPLVAGQGF 120

Query: 117 QWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
           + L   G+ V+      E +     + +R V K   + LK+A S D   G+    S  IT
Sbjct: 121 ERLRAAGVEVEVGPGADESRELNIGFFSRMVRKTPWVRLKVAASLDGKTGLENGMSQWIT 180

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
              ++   H  RA++ A+L G+GTVL D+P L  RL       P  +++D   +   D+ 
Sbjct: 181 SEPARADGHAWRARASAVLTGVGTVLEDNPRLDVRLV-PTPRQPHLVVVDSRLQTPPDAH 239

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291
           I       PV I     D   A A   +   +          DL  +L  L  RGV  L 
Sbjct: 240 IFIAGR--PVWIYAAVRDEAKAAALEARGATVTCLANADGKVDLGAMLKDLAARGVNELH 297

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344
           VE G  +  S I    VD +++Y +  +IG G           PL              D
Sbjct: 298 VESGHKLNGSLIREGCVDELLVYLAPKLIGRGLDMASHIHADGPLTSLAGVLPLEFKSVD 357

Query: 345 YFGSDVCL 352
            F  D+ +
Sbjct: 358 MFAPDLRI 365


>gi|304391942|ref|ZP_07373884.1| riboflavin biosynthesis protein RibD [Ahrensia sp. R2A130]
 gi|303296171|gb|EFL90529.1| riboflavin biosynthesis protein RibD [Ahrensia sp. R2A130]
          Length = 367

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 148/349 (42%), Positives = 202/349 (57%), Gaps = 8/349 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           A +M A LR +R H GLT TNPSV  L+VKDG V+GRG+TA GG PHAE  AL++AG  A
Sbjct: 16  AEWMGACLRLARRHRGLTGTNPSVGTLLVKDGRVVGRGITAKGGRPHAERVALDQAGPNA 75

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            G+ AYVTLEPC+H+G +PPCAQ +I  G+  V     DPD RV G+G   L +  I V 
Sbjct: 76  VGSIAYVTLEPCAHHGATPPCAQALINAGVAEVHTAYIDPDHRVDGKGHAMLREAEIAVH 135

Query: 128 RMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
               SE     +  YLTR+   R  +TLK+AVS+D M+G      V ITG +++  VH +
Sbjct: 136 AGQGSEIAGSDMRGYLTRKRLGRPMVTLKLAVSRDGMLG-RTGEEVSITGPLARAMVHRM 194

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA+ DAI VG GTV ADDP+LTCRL+GL+  SP R I D    L+  S+++ +A   PV 
Sbjct: 195 RAEHDAIAVGRGTVEADDPDLTCRLSGLEARSPERFIFDSAGVLTETSRLVASARTVPVH 254

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           +++    P L        +     +  +    L ++L  L  RG++SL++EGGA +A SF
Sbjct: 255 LISTL--PGLPEHLLASGVRHFAAEAENGHIALPEVLDDLGARGISSLMLEGGAQLASSF 312

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           +N+ LVD I  +     +G  GI SP+    +   F   R    G +  
Sbjct: 313 LNAGLVDEIAFFVGAKDVGPDGIASPITLATIPAEFNAGRTLQLGPNQL 361


>gi|312794193|ref|YP_004027116.1| riboflavin biosynthesis protein ribd [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181333|gb|ADQ41503.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 371

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 105/344 (30%), Positives = 167/344 (48%), Gaps = 12/344 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GE 65
            +M+ AL  ++    L   NP V C+IVK+G +IG+G     G  HAEV A+E+A   G 
Sbjct: 8   YYMNMALELAKKASPLVLPNPRVGCVIVKNGTIIGKGYHQKYGEKHAEVLAIEDAIKNGY 67

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
             + AT YV+LEPC H+G+ PPC + II+ GI++VVV   DP+  V+G G+Q L Q GI 
Sbjct: 68  LLKNATMYVSLEPCCHFGKQPPCTEAIIKSGIKKVVVATRDPNPLVNGNGIQILKQHGIE 127

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V+ +++ E +     +     +   +  +K+A S D  I          +       VH
Sbjct: 128 VVEGVLQKEAESINKDFFKYMKKGIPYTAIKVAQSIDGKIATPSNKRFLFSTEEENLFVH 187

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR +  A LV + TV++D+P L  R   +    P+R++LD   ++ L+  I+KT+    
Sbjct: 188 SLRQKYMATLVSVNTVISDNPILNARYGEI-VRQPIRVVLDTKLRIPLECNIVKTSDEYS 246

Query: 245 VIIVTEN--DDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAA 297
             IV     +D        +K I II+         DL    + L  + + S+LVEGG+ 
Sbjct: 247 TYIVCSENVNDTQKIDLLSQKGIKIIFAKSSEDGHLDLSDAFSKLAQQKIVSVLVEGGSL 306

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341
           +  S +  R+ D        + IG       +     E+ F  +
Sbjct: 307 LNFSLLKQRIADYWYSLIFNVFIGGQHTKGAVGGEGFEEFFPKL 350


>gi|332644755|gb|AEE78276.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 98/369 (26%), Positives = 169/369 (45%), Gaps = 19/369 (5%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           + DA F+  A   S    GLTS +P+  C+I    G V G G     G   AE  A+E A
Sbjct: 30  TTDAAFIRRAADLSEMSAGLTSPHPNFGCVIATSSGKVAGEGYLYAQGTKPAEALAVEAA 89

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE +RGATAY+ +EP   +G     +  +++ GI RVVV +  P   + G  ++ L   G
Sbjct: 90  GEFSRGATAYLNMEPGDCHGDHTAVS-ALVQAGIERVVVGIRHPLQHLRGSAIRELRSHG 148

Query: 124 IIVDRMMESE-----------GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172
           I V+ + E               +     + R   +     LK A++ D  I  +   + 
Sbjct: 149 IEVNVLGEDFESKVLEDARKSCLLVNAPLIHRACSRVPFSVLKYAMTLDGKIAASSGHAA 208

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
            I+  +S+ +V  LR  SDA++VG  TV  DDP LT R    Q H+P RI++     L  
Sbjct: 209 WISSKLSRTRVFELRGGSDAVIVGGNTVRQDDPRLTAR--HGQGHTPTRIVMTQSLDLPE 266

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
            + +   + ++ +++               K + ++  D  + ++++     RG  S+L 
Sbjct: 267 KANLWDVSEVSTIVVTQRGARKSFQKLLASKGVEVVEFDMLNPREVMEYFHLRGYLSILW 326

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           E G  +A S I+S ++  ++ + +  +IG    PSP+ +  + +    +       DVC 
Sbjct: 327 ECGGTLAASAISSSVIHKVVAFVAPKIIGGSKAPSPVGDLGMVEMTQALNLI----DVCY 382

Query: 353 EYIGKNLCL 361
           E +G ++ +
Sbjct: 383 EQVGPDMLV 391


>gi|253732422|ref|ZP_04866587.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253723812|gb|EES92541.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 357

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 115/354 (32%), Positives = 169/354 (47%), Gaps = 14/354 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +FM  A++ +    G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A 
Sbjct: 13  QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 72

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           GAT Y+TLEPCSH+G +PPC   II+C I +VV      D  +   G + L  +GI V+ 
Sbjct: 73  GATIYITLEPCSHFGSTPPCVNKIIDCKITKVVYAT--KDNSLDTHGDETLRAQGIEVEC 130

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + +         +   + ++   IT+K++ S D         S  IT    K  V+ LR 
Sbjct: 131 VDDERALQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 190

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA+L G  TV  DDP+ T R+      +P+++IL     +  + +I +     P+ I 
Sbjct: 191 RHDAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIY 247

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           TEN +    L   + NI IIY    DL  +L  L  RGV +LLVE G      F+ S  +
Sbjct: 248 TENPN----LTTNQTNIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 303

Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           D  ILY +  +IG  G         + E      F  V  +    +V L    K
Sbjct: 304 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 357


>gi|227499806|ref|ZP_03929901.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Anaerococcus
           tetradius ATCC 35098]
 gi|227218110|gb|EEI83378.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Anaerococcus
           tetradius ATCC 35098]
          Length = 357

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 113/353 (32%), Positives = 167/353 (47%), Gaps = 20/353 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M      +R   G   TNP V  ++ KDG VIGRG        HAE+   +     A GA
Sbjct: 7   MRECFSLARKGRGKVLTNPMVGAIVYKDGEVIGRGYHKSFYDDHAEIDCFKNLKGSAEGA 66

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T  V LEPCSH+G+ PPC   +I   I+RVV+   D + +V   G+  L   GI ++  +
Sbjct: 67  TLIVNLEPCSHFGKHPPCVDEVIRRKIKRVVISNIDTNPKV--DGISKLKACGIEVISGV 124

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E EGK     +      KR  + LK A S D  I      S  I+   S+  VH LR  
Sbjct: 125 LEEEGKKLNEKFFFNMSHKRPLVALKYAQSLDGKIATGKFDSKWISNEKSREFVHQLRND 184

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DAI+VG  T+L D+P LT R++  +   P+RII+     L+ D ++ K        I +
Sbjct: 185 YDAIIVGKNTLLTDNPRLTSRID--KGIDPVRIIVSDSLDLNPDLEVFKENSDGKTYIAS 242

Query: 250 ENDDPVL----ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
            +D  +      +  + KN +I      DL+ LL  L  + + S+LVEGG+ + +SF+  
Sbjct: 243 SSDKDIKLDSGLIRCKSKNGHI------DLEDLLKKLYEKNIGSVLVEGGSVLNNSFLEE 296

Query: 306 RLVDSIILYRSQIVI-GEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVCLE 353
            L+D I  + + I++ G     + + +G       K F       FG DV  E
Sbjct: 297 DLIDKIYQFMAPIIVSGFYSRSAFIGKGVGYIKDAKRFRIDDIKRFGEDVMFE 349


>gi|326561735|gb|EGE12070.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis 7169]
 gi|326569043|gb|EGE19112.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis BC1]
          Length = 350

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 115/366 (31%), Positives = 176/366 (48%), Gaps = 41/366 (11%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63
            D  +M  A+  ++  +  T  NP+V C++VKD +VIG+G     G PHAE+ AL +A  
Sbjct: 9   QDIYYMQLAIAAAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKA 68

Query: 64  -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
            G + +GATAYVTLEPCSH GR+PPCA  +I   +RRVVV   DP+ +V+G G++ L   
Sbjct: 69  QGFDTKGATAYVTLEPCSHTGRTPPCADALIAANLRRVVVASLDPNPKVAGNGIKKLQNA 128

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI ++  + + +       +L        ++ LK A S D     A   S  ITG  ++ 
Sbjct: 129 GIEVLVGVCDQQAAALNLGFLKAMRTGLPYVRLKTASSLDGRTATASGESKWITGIEARE 188

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----HSPMRIILDPHFKLS--LDS 234
            V  LRA+S AI+ G GT++AD+P LT R   L         P  +I+D   +LS   D 
Sbjct: 189 DVQRLRAKSAAIVTGSGTIIADNPALTVRSKQLGVDLHMIPKPKVVIVDRRNRLSDLDDY 248

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGVTSLLVE 293
           +++                                    DL  LL  L        +L+E
Sbjct: 249 QVLNHDNTLIW--------------------------RNDLMSLLKTLVSQYACYDVLIE 282

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDV 350
            G+ ++ +FI   LVD +I+Y++  ++G+   P     L++   +  F     D  G+D+
Sbjct: 283 AGSELSGAFITEGLVDELIVYQAPCILGQDARPMFACQLDQLVQQYRFGLHSADIIGNDI 342

Query: 351 CLEYIG 356
            L Y  
Sbjct: 343 RLIYRS 348


>gi|54307992|ref|YP_129012.1| putative pyrimidine deaminase/pyrimidine reductase [Photobacterium
           profundum SS9]
 gi|46912418|emb|CAG19210.1| Putative pyrimidine deaminase/pyrimidine reductase [Photobacterium
           profundum SS9]
          Length = 371

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 111/372 (29%), Positives = 176/372 (47%), Gaps = 28/372 (7%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            SS D   M  A+  ++     T+ NP+V C+I +   ++G G     G PHAEV AL  
Sbjct: 2   FSSIDHSMMLRAIELAKRGRFTTAPNPNVGCIIAQGATIVGEGFHYQAGQPHAEVFALRA 61

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE+A+GATAYVTLEPCSH+GR+PPCAQ +I   + RVV  + DP+ +V GRG++ L   
Sbjct: 62  AGEQAKGATAYVTLEPCSHFGRTPPCAQALINANVSRVVCAMVDPNPKVGGRGIEMLKIA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++ ++ +     ++ R      ++ LK+A S D    ++   S  ITG  ++ 
Sbjct: 122 GIEVQTGLLAADAQALNFGFIKRMKTGLPYVQLKLAASLDGRTALSNGESKWITGPEARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
            V   RA++ AIL    TV+ADDP L  R + L E             P R+I+D   ++
Sbjct: 182 DVQRFRARAGAILSTSSTVIADDPSLNVRWSELGEPVKAEYPETALRQPTRVIIDSKNRV 241

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD------LKKLLTILVG 284
           + D K+            T      +       ++  +    +D      L  L+  L  
Sbjct: 242 TPDFKLFSLEGE------TLLARAEMGQETWPDSVTQVLIPKQDDSEQLNLTSLMLELAK 295

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMC 340
           + +  + VE GA +A   + + LVD +ILY++  ++G         +G        N   
Sbjct: 296 QDINHIWVEAGAELAGGLLAAGLVDELILYQAPKLMGCDSRSLINLKGLTSMSQVLNLEI 355

Query: 341 VRRDYFGSDVCL 352
                 G D+ +
Sbjct: 356 TDVRMIGPDLRI 367


>gi|296136861|ref|YP_003644103.1| riboflavin biosynthesis protein RibD [Thiomonas intermedia K12]
 gi|295796983|gb|ADG31773.1| riboflavin biosynthesis protein RibD [Thiomonas intermedia K12]
          Length = 366

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 108/327 (33%), Positives = 167/327 (51%), Gaps = 19/327 (5%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             S  D RFM  AL  +   +  TS NP V C++V+DG V+G G T   G  HAEVQA++
Sbjct: 7   SFSEQDQRFMRRALDLAHSAMYRTSPNPRVGCVLVRDGQVLGEGATLAAGQDHAEVQAVK 66

Query: 62  EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           +A   G E RGAT YVTLEPC+H+GR+PPCA  +   G+ RVV  + DP+  V+G+GLQ 
Sbjct: 67  QAWERGHEVRGATTYVTLEPCAHHGRTPPCADLLATQGVARVVAALVDPNPLVAGQGLQR 126

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L   GI +   +   E +     +++R V     + LK+A S D +  +    S  IT  
Sbjct: 127 LRDAGIQVDVGLFADEAREINLGFISRMVRGTPWVRLKVAASLDGVTALPNGASQWITSE 186

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            ++   H  RA++ A+L G+GTV ADDP+L  R        P+RI++D   +    ++++
Sbjct: 187 AARADGHHWRARACAVLTGLGTVRADDPQLNVR-AVQTPRQPIRIVIDSRLECPPTARLL 245

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--------------DLKKLLTILV 283
           ++A     I+   + +         ++  I   D +              DL+ L+ +L 
Sbjct: 246 QSADSPLWIVHALSPEQAAPRLAALRSAAIALLDLQDIALPADPDKPGKTDLRALMQVLG 305

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDS 310
            RG+  L  E G  +  S + + +VD 
Sbjct: 306 QRGINELHCEAGEKLNGSLLRAGVVDE 332


>gi|258415855|ref|ZP_05682126.1| riboflavin specific deaminase [Staphylococcus aureus A9763]
 gi|257839448|gb|EEV63921.1| riboflavin specific deaminase [Staphylococcus aureus A9763]
          Length = 347

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 113/354 (31%), Positives = 167/354 (47%), Gaps = 14/354 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +FM  A++ +    G T  NP V  ++V +G ++G G     G  HAEVQAL+ A + A 
Sbjct: 3   QFMDYAIQLANMVQGQTGVNPPVGAVVVNEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           GAT Y+TLEPCSH+G +PPC   II+C I +VV      D  +   G + L   GI V+ 
Sbjct: 63  GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDEALRAHGIEVEC 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + +         +   + ++   IT+K++ S D         S  IT    K  V+ LR 
Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA+L G  TV  DDP+ T R+      +P+++IL     +  + +I +     P+ I 
Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIY 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           TEN +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  +
Sbjct: 238 TENPN----LTSNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293

Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           D  ILY +  +IG  G         + E      F  V  +    +V L    K
Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347


>gi|326560692|gb|EGE11060.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis
           46P47B1]
          Length = 350

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 115/364 (31%), Positives = 177/364 (48%), Gaps = 41/364 (11%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63
            D  +M  A+  ++  +  T  NP+V C++VKD +VIG+G     G PHAE+ AL +A  
Sbjct: 9   QDIYYMQLAIAAAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKA 68

Query: 64  -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
            G + +GATAYVTLEPCSH GR+PPCA  +I   ++RVV+   DP+ +V+G G++ L   
Sbjct: 69  QGFDTKGATAYVTLEPCSHTGRTPPCADALIAADLKRVVIASLDPNPKVAGNGIKKLQNA 128

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI ++  + + +       +L        ++ LK A S D    MA   S  ITG  ++ 
Sbjct: 129 GIEVLVGVCDQQAAALNLGFLKAMRMGLPYVRLKTASSLDGRTAMASGESKWITGTEARE 188

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----HSPMRIILDPHFKLS--LDS 234
            V  LRAQS AI+ G GT++AD+P LT R   L         P  +I+D   +LS   D 
Sbjct: 189 DVQRLRAQSAAIVTGSGTIIADNPALTVRSKQLGVDLHMLPKPKVVIVDRRNRLSDLDDY 248

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGVTSLLVE 293
           +++                                    DL  LL  L        +L+E
Sbjct: 249 QVLNRDDTLIW--------------------------RNDLMSLLKTLVSQYACYDVLIE 282

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDV 350
            G+ ++ +FI   LVD +I+Y++  ++G+   P     L++   +  F     D  G+D+
Sbjct: 283 AGSELSGAFITEGLVDELIVYQAPCILGQDARPMFACQLDQLVQQYRFGLHSADIIGNDI 342

Query: 351 CLEY 354
            L Y
Sbjct: 343 RLIY 346


>gi|296114110|ref|YP_003628048.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis RH4]
 gi|295921804|gb|ADG62155.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis RH4]
          Length = 350

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 115/366 (31%), Positives = 176/366 (48%), Gaps = 41/366 (11%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63
            D  +M  A+  ++  +  T  NP+V C++VKD +VIG+G     G PHAE+ AL +A  
Sbjct: 9   QDIYYMQLAIAAAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKA 68

Query: 64  -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
            G + +GATAYVTLEPCSH GR+PPCA  +I   +RRVVV   DP+ +V+G G++ L   
Sbjct: 69  QGFDTKGATAYVTLEPCSHTGRTPPCADALIAANLRRVVVASLDPNPKVAGNGIKKLQNA 128

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI ++  + + +       +L        ++ LK A S D     A   S  ITG  ++ 
Sbjct: 129 GIEVLVGVCDQQAAALNLGFLKAMRTGLPYVRLKTASSLDGRTATASGESKWITGIEARE 188

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----HSPMRIILDPHFKLS--LDS 234
            V  LRA+S AI+ G GT++AD+P LT R   L         P  +I+D   +LS   D 
Sbjct: 189 DVQRLRAKSAAIVTGSGTIIADNPALTVRSKQLGVDLHMLPKPKVVIVDRRNRLSDLDDY 248

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGVTSLLVE 293
           +++                                    DL  LL  L        +L+E
Sbjct: 249 QVLNRDDTLIW--------------------------RNDLMSLLKTLVSQYACYDVLIE 282

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDV 350
            G+ ++ +FI   LVD +I+Y++  ++G+   P     L++   +  F     D  G+D+
Sbjct: 283 AGSELSGAFITEGLVDELIVYQAPCILGQDARPMFACQLDQLVQQYRFGLHSADIIGNDI 342

Query: 351 CLEYIG 356
            L Y  
Sbjct: 343 RLIYRS 348


>gi|121609770|ref|YP_997577.1| riboflavin biosynthesis protein RibD [Verminephrobacter eiseniae
           EF01-2]
 gi|121554410|gb|ABM58559.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Verminephrobacter eiseniae EF01-2]
          Length = 371

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 116/350 (33%), Positives = 168/350 (48%), Gaps = 11/350 (3%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA---GEEAR 68
            AL  +   +  TS NP V C+I    G+VIGRG T   G  HAE+ AL  A   G   R
Sbjct: 11  EALDLAHQGLYRTSPNPRVGCVIADAAGVVIGRGSTGPAGGAHAEIMALRNAAAGGHSVR 70

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GATAYVTLEPCSH+GR+ PC   ++  GI +VV  + DP+  V+G+G   L   G+ +  
Sbjct: 71  GATAYVTLEPCSHHGRTGPCCDALVAAGIAKVVASLTDPNPLVAGQGFARLRAAGVAVQV 130

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
                  +     + +R +  R  + +K+A S D +  +A   S  ITG  ++   H  R
Sbjct: 131 GPGAQAARELNVGFFSRMLRHRPWVRMKLAASLDGVTALADGSSQWITGPAARADGHAWR 190

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           A++ A+L GIGTVLADDP L  R     E  P  ++LD   ++ LD+ I        +  
Sbjct: 191 ARACALLTGIGTVLADDPRLDVRALH-TERQPALVLLDSALRVPLDACIFAADRAVHLYA 249

Query: 248 VTENDDPVLALAFRKKNINIIY--CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
             END    AL  R   + ++       DL  +L  L  R V  L VE G  +  + +  
Sbjct: 250 AAENDAKRRALEQRGATLAVLPDSQGRVDLAAMLHDLARRQVNELHVEAGQQLNGALLRQ 309

Query: 306 RLVDSIILYRSQIVIGEG---GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            LVD +++Y +  +IG G      +PL      +       +  G DV +
Sbjct: 310 GLVDELLVYLAPKLIGPGLGMAQLAPLAALSQAQALDFHGLERVGEDVRI 359


>gi|196231665|ref|ZP_03130522.1| riboflavin biosynthesis protein RibD [Chthoniobacter flavus
           Ellin428]
 gi|196224137|gb|EDY18650.1| riboflavin biosynthesis protein RibD [Chthoniobacter flavus
           Ellin428]
          Length = 344

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 108/353 (30%), Positives = 162/353 (45%), Gaps = 29/353 (8%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  FM AAL  +R  +G TS NP+V  +IV+ G +I RG     G PHAE++AL    +
Sbjct: 2   QDEEFMRAALAEARRGLGQTSPNPAVGAVIVRAGKIIARGYHHRAGLPHAEIEALRALPK 61

Query: 66  --EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
              ARGAT YVTLEPCS +GR+PPC + II  G RRVV+   DP+   +GRG++ L   G
Sbjct: 62  PALARGATIYVTLEPCSTHGRTPPCVEAIIAAGFRRVVIGTIDPNPSHAGRGVKLLRDTG 121

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +   ++E+E +    A+    V K   +  K  +S D  I         +T  +++  
Sbjct: 122 IAVTTDVLEAECRALNAAFNHWIVTKMPLVIAKAGMSLDGRITRPPGEGQWLTNAVARKD 181

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H LR+Q DAIL+G  T+  D+P LT R        P RI++    KL  ++ +      
Sbjct: 182 AHRLRSQVDAILIGAETLRQDNPRLTVR-GVRGARQPWRIVITRSGKLPKEAHLFTDEHR 240

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
              ++  E                        L+ +L  L  R +TS+++EGG  V    
Sbjct: 241 ERTLVYREKS----------------------LRTVLRDLGKRQITSVMIEGGGGVLGEA 278

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCL 352
            + RLV     Y + ++ G   +      +                 G ++CL
Sbjct: 279 FDRRLVQRAHFYLAPLLCGGPAVVVKGLGVGSNAEAATIRNATYTRLGDNLCL 331


>gi|297735254|emb|CBI17616.3| unnamed protein product [Vitis vinifera]
          Length = 586

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 94/368 (25%), Positives = 163/368 (44%), Gaps = 18/368 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D+  +  A   +    G TS +P+  C+I   G V+G G     G   AEVQA+E AG
Sbjct: 22  ALDSFHVRRAAEIADKSAGFTSPHPNFGCVIATAGKVVGEGYLYAQGTKPAEVQAVEAAG 81

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E  RGATAY+ +EP   +G     +  +++ GI R VV +  P   +    L+ +  +G+
Sbjct: 82  ELCRGATAYLNMEPGDCHGDRTAVS-ALVKAGITRAVVGIRHPLQHLRSHALRAMRSEGL 140

Query: 125 IVDRMMESE-----------GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP 173
            VD + E               I     + R   +     LK A++ D  I  +   +  
Sbjct: 141 QVDVLGEDLKSKIVEEALKSCLIVNAPLIYRAASRVPFSVLKYAMTLDGKIAASSGHASW 200

Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233
           I+   S+ +V  LR +SDAI+VG  TV  D+P LT R  G   H P+RI++     L   
Sbjct: 201 ISSKESRYRVFELRGRSDAIVVGGNTVRKDNPRLTARHGG--GHVPIRIVMSRTLNLPEV 258

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
           + +   + +  +++               K + ++  D  + + ++     RG  S+L E
Sbjct: 259 ANLWDVSSVPTIVVTQRGARKSFQKFLASKGVEVVEFDILNTRDVMEYFYDRGYLSILWE 318

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
            G  +A S I+S ++  +  + +  +IG    P+P+ E  + +    +       D   E
Sbjct: 319 CGGTLAASAISSGIIHKVFAFVAPKIIGGKNAPTPVGELGMVEMTQALDLI----DFSYE 374

Query: 354 YIGKNLCL 361
            IG ++ +
Sbjct: 375 QIGPDMLI 382


>gi|302791619|ref|XP_002977576.1| hypothetical protein SELMODRAFT_106737 [Selaginella moellendorffii]
 gi|300154946|gb|EFJ21580.1| hypothetical protein SELMODRAFT_106737 [Selaginella moellendorffii]
          Length = 561

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 92/366 (25%), Positives = 163/366 (44%), Gaps = 17/366 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           FD+  M  A   +    G T+ +P+ AC+I +   V+G       G   AE+QA+E AGE
Sbjct: 8   FDSFHMLRAAELADGSAGHTAPHPNSACVIARSEKVVGEAFLYGQGTRCAEIQAVEMAGE 67

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            +RGATAY+ LEP   +G      + + + G+ RVVV +  P    SG+ +  L   GI 
Sbjct: 68  LSRGATAYLNLEPGDCHGDDTAI-KALKQSGVARVVVGLQHPLKHHSGKAIAALRGLGIP 126

Query: 126 VDRMMES----------EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
           VD + +             +      L R         LK A++ D  I  +   +  ++
Sbjct: 127 VDVLEKHGDGTFKEAFRACQEVNAPLLYRATHGVPFSILKYAMTLDGKIAASTGHASWVS 186

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
             +S+ +V   R +SDAI+VG  TV  D+P LT R  G   H P+R+++     L L+  
Sbjct: 187 SKMSRQRVFETRGRSDAIIVGGNTVRRDNPRLTTRQEG--GHLPVRVVMSRTLNLPLELH 244

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
           +   +    +++               + + ++  D    K ++     RG  S+L E G
Sbjct: 245 LWDVSNAHTIVMTQRGARREFQRELVARGVEVVEFDFLTPKAVMDYCYERGFLSVLWECG 304

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
            A++   + + ++  +I + +  +IG    P+P+ E  + +    +       DV  E +
Sbjct: 305 GALSAPALAAGIIHKVIAFVAPKIIGGVTAPTPVGELGMVEMTQALNLL----DVTFEQV 360

Query: 356 GKNLCL 361
           G ++ +
Sbjct: 361 GPDMLV 366


>gi|237737703|ref|ZP_04568184.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium mortiferum ATCC 9817]
 gi|229419583|gb|EEO34630.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Fusobacterium mortiferum ATCC 9817]
          Length = 358

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 122/359 (33%), Positives = 194/359 (54%), Gaps = 11/359 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D ++M+ AL  +    G  + NP V  ++VKDG+V+G G     G PHAEV ALE AGE
Sbjct: 1   MDKKYMARALELAALGEGSVNPNPLVGAVVVKDGVVVGEGYHKKYGGPHAEVFALEMAGE 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A GA  YVTLEPCSHYG++PPCA+ IIE GI+R +V   DP+  VSGRG++ L   GI 
Sbjct: 61  KAYGADIYVTLEPCSHYGKTPPCAKKIIEMGIKRCIVASLDPNPLVSGRGIKMLQDAGIE 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V  +ME E K     ++    EK+S++ LK  ++ D  I      S  IT  +++ +V 
Sbjct: 121 VVTGVMEREAKELNRVFMKYISEKKSYLFLKCGITLDGKIATKTGNSKWITNELAREKVQ 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR +   I+VGI TVL DDP LT R+       P RI++DP  ++ L+SKI+       
Sbjct: 181 RLRNRYMGIMVGINTVLKDDPSLTARIE--NGRDPYRIVIDPKLEIPLESKIVNFEDGKS 238

Query: 245 VIIVT-ENDDPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHS 301
           VII + EN +        +K + + Y +  + +  ++L      G+  +++EGG+ +   
Sbjct: 239 VIITSQENRESEKIKILEEKRVRVEYLEGDEFEVSEILKKTGELGIDGIILEGGSYLISK 298

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355
                 +D   ++ +  ++G+    S +    +E          V+ + +G++V +E+ 
Sbjct: 299 AFKENAIDGGEIFIAPKILGDSEAISFVRGFSVENIADGFELKNVKINSYGNNVSMEFY 357


>gi|326318264|ref|YP_004235936.1| riboflavin biosynthesis protein RibD [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375100|gb|ADX47369.1| riboflavin biosynthesis protein RibD [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 377

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 120/361 (33%), Positives = 179/361 (49%), Gaps = 14/361 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCPHAEVQALEE 62
           +S    FM  ALR +   +  TS NP V C++V     +IG+G T   G PHAEV AL +
Sbjct: 8   ASLPTDFMQLALRLAEEGLYRTSPNPRVGCVLVDARQQIIGQGSTQRAGGPHAEVMALRD 67

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G   +GA AYVTLEPCSH+GR+ PC   ++E GI RVV  + DP+ RV+G+G + L
Sbjct: 68  ARARGHATQGAIAYVTLEPCSHHGRTGPCCDALVEAGIARVVASLGDPNPRVAGQGFERL 127

Query: 120 SQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              G+ V+    +E    L+  +L+R V +   + LK A S D +  +    S  IT   
Sbjct: 128 RAAGVEVEVGPGAEASRELNIGFLSRMVRRMPWVRLKSAASLDGITALPDGQSQWITSAA 187

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++  VH  RA++ A+L G+GTVLADDP L  R     E  P   +LD H +   D+ +++
Sbjct: 188 ARADVHAWRARACAVLTGVGTVLADDPRLDVR-EVPTERQPWVAVLDSHLRTPPDAALLR 246

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEG 294
            A    V+I     D     A       I++    D    L+ ++  L  R    + VE 
Sbjct: 247 -AQARDVVIYCAIRDESRERALCASGATIVHLPGPDGRVALRDVMADLAAREANEVHVEA 305

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG--IP-SPLEEGYLEKNFMCVRRDYFGSDVC 351
           GA  + +   + LVD ++LY +  ++G+G    P  PL +               G D+ 
Sbjct: 306 GAIASGALCAAGLVDEVLLYLAPKLLGQGRGIAPFGPLPDLGQALGLTIRSVAQVGPDLR 365

Query: 352 L 352
           +
Sbjct: 366 V 366


>gi|317474402|ref|ZP_07933676.1| riboflavin biosynthesis protein RibD [Bacteroides eggerthii
           1_2_48FAA]
 gi|316909083|gb|EFV30763.1| riboflavin biosynthesis protein RibD [Bacteroides eggerthii
           1_2_48FAA]
          Length = 347

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 111/348 (31%), Positives = 173/348 (49%), Gaps = 20/348 (5%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65
            ++M   ++ ++  +  T+ NP V  +IV DG +IG G     G  HAEV A+    E  
Sbjct: 4   EKYMRRCIQLAQNGLCNTAPNPMVGAVIVCDGKIIGEGYHIRCGEAHAEVNAIRSVKEPS 63

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
             + +T YV+LEPC+HYG++PPCA  IIE  I R+V+   DP  +V+GRG+Q L   G  
Sbjct: 64  LLKRSTIYVSLEPCAHYGKTPPCADLIIEKQIPRIVIGCQDPFAKVAGRGIQKLKDAGRE 123

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI--GMAGCGSVPITGFISKNQ 182
           ++  ++E + K  +  ++T     R +ITLK A S D  I         V ++  ++   
Sbjct: 124 VIVGVLEEDCKNLIRRFVTFHSLHRPYITLKWAESADKHIDKCRKDGKPVILSTPLTSML 183

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  RA+  AI+VG  T   D+P LT R    Q  SP+RI++D   +LS    +   ++ 
Sbjct: 184 VHKRRAEHSAIMVGTHTAELDNPSLTVR--NWQGQSPVRIVIDRQQRLSPSLHLFDDSIR 241

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
              ++ T         AF      +I      L +++  L  +G+ SLLVEGG+ +  SF
Sbjct: 242 --TLVFTGQPHA----AFPNTEYIVIDFQQNILPQIMQHLYAQGLQSLLVEGGSYLLQSF 295

Query: 303 INSRLVDSIILYRSQ-IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           IN+ L D I +  S   +    G+ +P     +      V   YFG +
Sbjct: 296 INAELWDEIFVEESPLKLF--SGVKAPEIGNKIP----YVNEQYFGRN 337


>gi|15924761|ref|NP_372295.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927345|ref|NP_374878.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           N315]
 gi|148268246|ref|YP_001247189.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150394314|ref|YP_001316989.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156980087|ref|YP_001442346.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253315858|ref|ZP_04839071.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|255006556|ref|ZP_05145157.2| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257794151|ref|ZP_05643130.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9781]
 gi|258420684|ref|ZP_05683623.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9719]
 gi|258438334|ref|ZP_05689618.1| riboflavin specific deaminase [Staphylococcus aureus A9299]
 gi|258443792|ref|ZP_05692131.1| riboflavin specific deaminase [Staphylococcus aureus A8115]
 gi|258446003|ref|ZP_05694179.1| riboflavin specific deaminase [Staphylococcus aureus A6300]
 gi|258448269|ref|ZP_05696396.1| riboflavin specific deaminase [Staphylococcus aureus A6224]
 gi|258454203|ref|ZP_05702174.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A5937]
 gi|282893262|ref|ZP_06301496.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A8117]
 gi|282927897|ref|ZP_06335508.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A10102]
 gi|295406080|ref|ZP_06815888.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A8819]
 gi|296276038|ref|ZP_06858545.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297244995|ref|ZP_06928872.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A8796]
 gi|13701564|dbj|BAB42857.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247543|dbj|BAB57933.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|147741315|gb|ABQ49613.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946766|gb|ABR52702.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156722222|dbj|BAF78639.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257788123|gb|EEV26463.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9781]
 gi|257843288|gb|EEV67698.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9719]
 gi|257848378|gb|EEV72369.1| riboflavin specific deaminase [Staphylococcus aureus A9299]
 gi|257851198|gb|EEV75141.1| riboflavin specific deaminase [Staphylococcus aureus A8115]
 gi|257855245|gb|EEV78184.1| riboflavin specific deaminase [Staphylococcus aureus A6300]
 gi|257858508|gb|EEV81384.1| riboflavin specific deaminase [Staphylococcus aureus A6224]
 gi|257863655|gb|EEV86412.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A5937]
 gi|282590407|gb|EFB95486.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A10102]
 gi|282764580|gb|EFC04706.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A8117]
 gi|285817450|gb|ADC37937.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Staphylococcus aureus 04-02981]
 gi|294969077|gb|EFG45098.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A8819]
 gi|297178075|gb|EFH37323.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A8796]
 gi|315130592|gb|EFT86578.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329727599|gb|EGG64055.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 347

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 113/354 (31%), Positives = 167/354 (47%), Gaps = 14/354 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +FM  A++ +    G T  NP V  ++V +G ++G G     G  HAEVQAL+ A + A 
Sbjct: 3   QFMDYAIQLANMVQGQTGVNPPVGAVVVNEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           GAT Y+TLEPCSH+G +PPC   II+C I +VV      D  +   G + L   GI V+ 
Sbjct: 63  GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDETLRAHGIEVEC 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + +         +   + ++   IT+K++ S D         S  IT    K  V+ LR 
Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA+L G  TV  DDP+ T R+      +P+++IL     +  + +I +     P+ I 
Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIY 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           TEN +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  +
Sbjct: 238 TENPN----LTSNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293

Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           D  ILY +  +IG  G         + E      F  V  +    +V L    K
Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347


>gi|119502840|ref|ZP_01624925.1| Riboflavin biosynthesis protein RibD [marine gamma proteobacterium
           HTCC2080]
 gi|119461186|gb|EAW42276.1| Riboflavin biosynthesis protein RibD [marine gamma proteobacterium
           HTCC2080]
          Length = 359

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 117/356 (32%), Positives = 178/356 (50%), Gaps = 19/356 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  +R      + NP V C+IV D  ++G+G T   G  HAE+ AL  A    +GA
Sbjct: 1   MEQALAEARKGRFWATPNPHVGCVIVSDNKILGKGFTQPVGGAHAEIMAL-GACASPQGA 59

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPC+H GR+ PC + +I  GI RVV  ++DP+  VSG+G   L   GI +   +
Sbjct: 60  TAYVTLEPCAHQGRTGPCVEALISAGIGRVVGALEDPNPSVSGKGYDRLRAAGIAVTQGV 119

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
                ++ L  +L R       + LK+A S D    MA   S  ITG +++  V   RA 
Sbjct: 120 YSEAARVELAGFLLRMERGWGRVRLKLACSLDGRTAMASGESQWITGALARQDVQRQRAA 179

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDSKIIKT 239
           S  I+ GIGTVLADD  LT R + L              P R++LD + +   +++++ +
Sbjct: 180 SSVIITGIGTVLADDCSLTVRSDELGLRGEELTRALHRPPTRVVLDSNARTPGEARVLSS 239

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
              AP ++VT N+  V A A  K     +     DL  +L  L  +G   +L+E G ++A
Sbjct: 240 N--APTLVVTANEKQVPAGALHKT--APVTEAGLDLGDVLESLGSQGANEILIESGPSLA 295

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +F+ + LVD +++Y++ +++G    P       E               GSD+ +
Sbjct: 296 AAFLKADLVDELLIYQAPVLLGSSARPLADLAFSELKDGIQLAYQELSPLGSDLRI 351


>gi|295698401|ref|YP_003603056.1| riboflavin biosynthesis protein RibD [Candidatus Riesia
           pediculicola USDA]
 gi|291157057|gb|ADD79502.1| riboflavin biosynthesis protein RibD [Candidatus Riesia
           pediculicola USDA]
          Length = 373

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 103/373 (27%), Positives = 180/373 (48%), Gaps = 18/373 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++  D +FMS A+  ++     TS NP+V C+IV++  ++G    +  G  HAEV A+++
Sbjct: 1   MNDKDRQFMSRAIFLAKKGKFTTSPNPNVGCVIVQNNRIVGESYHSKTGESHAEVLAMKK 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG   +GAT YVTLEPC+HYG +PPC   +I   I ++ V + DP+ +VSG+ L  L + 
Sbjct: 61  AGHFLKGATVYVTLEPCNHYGLTPPCVDELINAKISKIFVSMTDPNPKVSGKSLIKLKKS 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM-IGMAGCGSVPITGFISK 180
           G+ ++  +++ E +     ++ R  +   +IT+K+A S ++  I +    +  I+ + S+
Sbjct: 121 GVQVISGLLKDESEKINLGFIKRMKQGLPYITIKMATSINSKVIPINFEKNKWISSYKSR 180

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFK 229
             V  +RAQS A+L    T+++DD  L  R N   +             P+RI++D   K
Sbjct: 181 QDVQEIRAQSSAVLTTGSTIVSDDSRLNVRWNDFSDELKNIYPEKEIRQPVRIVIDTKNK 240

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
           +  + KI+ T      +  ++          ++ +  +      DL   +  +  R + S
Sbjct: 241 VHENHKIVNTPGEC-WLFRSQFSKKRWKKNVKEFSTKLDSEGRIDLIYTMKQIARRKINS 299

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDY 345
           +L+E G   A S ++  L D IILY +    G       +     E N       V+   
Sbjct: 300 ILIESGPTFASSLLSLNLFDQIILYIAPKFFGSQSKELIIISKESEINNISKLRFVQVKK 359

Query: 346 FGSDVCLEYIGKN 358
            G DV +    K 
Sbjct: 360 IGKDVRVILKKKE 372


>gi|255038066|ref|YP_003088687.1| riboflavin biosynthesis protein RibD [Dyadobacter fermentans DSM
           18053]
 gi|254950822|gb|ACT95522.1| riboflavin biosynthesis protein RibD [Dyadobacter fermentans DSM
           18053]
          Length = 354

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 122/363 (33%), Positives = 187/363 (51%), Gaps = 26/363 (7%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D ++M  AL+ + +  G  S NP V C+IV DG +IG G     G PHAEV+A+E+  
Sbjct: 2   ETDNQWMERALQLAGYGRGAVSPNPMVGCVIVHDGRIIGEGWHRAYGGPHAEVRAIED-- 59

Query: 65  EEARG-------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            +ARG       ATAYVTLEPCSH G++PPCA  ++   ++RVV+C +DP+  VSGRG++
Sbjct: 60  TDARGNSHLLPQATAYVTLEPCSHTGKTPPCADLLVSRRLKRVVICNNDPNPLVSGRGIR 119

Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
            L + GI +   + E+ G      + T    +R ++ LK A + D  +G      + I+G
Sbjct: 120 RLREAGIEVECGVAEAAGTELNKRFFTAMTLQRPYVILKWAETADGFLGYQAGSPLQISG 179

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
            +S  +VH  R + DAI+VG  T L D+P L  R       +P+RI+ D H +L     +
Sbjct: 180 TLSNMRVHQWRTEEDAIMVGYKTALMDNPRLNVR--HWAGRNPVRIVTDRHLQLPPQLHL 237

Query: 237 IKTALLAPVIIVT---ENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLL 291
              +     ++V+   E D P     +       +  + +  ++ ++L  L  R V SLL
Sbjct: 238 FDQSQS--TVVVSYDLETDIPSDPERYLAPTTAYMKIEPKVEEILQILQGLHRRKVQSLL 295

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           VEGGAAV ++F    L D I   +  I IG  G+ +P  +G    +      +  G D+ 
Sbjct: 296 VEGGAAVINAFFECGLWDEIRRCQGGITIG-NGVAAPAPKGIFRGS------ERVGDDLW 348

Query: 352 LEY 354
             Y
Sbjct: 349 TFY 351


>gi|282927316|ref|ZP_06334937.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9765]
 gi|282592080|gb|EFB97105.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9765]
          Length = 347

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 114/354 (32%), Positives = 167/354 (47%), Gaps = 14/354 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +FM  A++ +    G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A 
Sbjct: 3   QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           GAT Y+TLEPCSH+G +PPC   II+C I +VV      D  +   G + L   GI V+ 
Sbjct: 63  GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDETLRAHGIEVEC 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + +         +   + ++   IT+K++ S D         S  IT    K  V+ LR 
Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA+L G  TV  DDP+ T R+       P+++IL     +  + +I +     P+ I 
Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQ--DGKKPIKVILSKSGNIHFNQQIYQDES-TPIWIY 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           TEN +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  +
Sbjct: 238 TENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293

Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           D  ILY +  +IG  G         + E      F  V  +    +V L    K
Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347


>gi|302751598|gb|ADL65775.1| bifunctional pyrimidine reductase / riboflavin biosynthesis protein
           [Staphylococcus aureus subsp. aureus str. JKD6008]
          Length = 343

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 114/352 (32%), Positives = 166/352 (47%), Gaps = 14/352 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A++ +    G T  NP V  +IVK+G ++G G     G  HAEVQAL+ A + A GA
Sbjct: 1   MDYAIQLANMVQGQTGVNPPVGAVIVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAEGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           T Y+TLEPCSH+G +PPC   II+C I +VV      D  +   G + L   GI V+ + 
Sbjct: 61  TIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDETLRAHGIEVECVD 118

Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
           +         +   + ++   IT+K++ S D         S  IT    K  V+ LR + 
Sbjct: 119 DERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRH 178

Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
           DA+L G  TV  DDP+ T R+      +P+++IL     +  + +I +     P+ I TE
Sbjct: 179 DAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIYTE 235

Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
           N +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  +D 
Sbjct: 236 NPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDE 291

Query: 311 IILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
            ILY +  +IG  G         + E      F  V  +    +V L    K
Sbjct: 292 FILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 343


>gi|15232791|ref|NP_190323.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
           thaliana]
 gi|5541706|emb|CAB51211.1| putative protein [Arabidopsis thaliana]
 gi|332644754|gb|AEE78275.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis
           thaliana]
          Length = 599

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 98/369 (26%), Positives = 169/369 (45%), Gaps = 19/369 (5%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           + DA F+  A   S    GLTS +P+  C+I    G V G G     G   AE  A+E A
Sbjct: 30  TTDAAFIRRAADLSEMSAGLTSPHPNFGCVIATSSGKVAGEGYLYAQGTKPAEALAVEAA 89

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE +RGATAY+ +EP   +G     +  +++ GI RVVV +  P   + G  ++ L   G
Sbjct: 90  GEFSRGATAYLNMEPGDCHGDHTAVS-ALVQAGIERVVVGIRHPLQHLRGSAIRELRSHG 148

Query: 124 IIVDRMMESE-----------GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172
           I V+ + E               +     + R   +     LK A++ D  I  +   + 
Sbjct: 149 IEVNVLGEDFESKVLEDARKSCLLVNAPLIHRACSRVPFSVLKYAMTLDGKIAASSGHAA 208

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
            I+  +S+ +V  LR  SDA++VG  TV  DDP LT R    Q H+P RI++     L  
Sbjct: 209 WISSKLSRTRVFELRGGSDAVIVGGNTVRQDDPRLTAR--HGQGHTPTRIVMTQSLDLPE 266

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
            + +   + ++ +++               K + ++  D  + ++++     RG  S+L 
Sbjct: 267 KANLWDVSEVSTIVVTQRGARKSFQKLLASKGVEVVEFDMLNPREVMEYFHLRGYLSILW 326

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           E G  +A S I+S ++  ++ + +  +IG    PSP+ +  + +    +       DVC 
Sbjct: 327 ECGGTLAASAISSSVIHKVVAFVAPKIIGGSKAPSPVGDLGMVEMTQALNLI----DVCY 382

Query: 353 EYIGKNLCL 361
           E +G ++ +
Sbjct: 383 EQVGPDMLV 391


>gi|187479427|ref|YP_787452.1| riboflavin biosynthesis protein [includes
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           and 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bordetella avium 197N]
 gi|115424014|emb|CAJ50567.1| riboflavin biosynthesis protein [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           and 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bordetella avium 197N]
          Length = 371

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 111/366 (30%), Positives = 175/366 (47%), Gaps = 17/366 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL---EEAGEEA 67
           M  AL  +R  +  T+ NP V C+IV+DG ++G G T   G  HAEV AL     AG + 
Sbjct: 1   MQRALGLAREVLYTTTPNPRVGCVIVRDGQILGEGATQPPGGGHAEVMALRAARAAGHDL 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
            GAT YVTLEPCSH+GR+PPC   ++     RVVV + DP+ RVSG+G   L   G+ + 
Sbjct: 61  AGATVYVTLEPCSHFGRTPPCVDALVAAAPARVVVALGDPNPRVSGQGFARLRAAGVEVS 120

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             + E E       ++ R       + LK+A S D    +    S  ITG  ++   H  
Sbjct: 121 SGVCEEEALALNPGFVARMSRGTPWLWLKLAASLDGRSALHNGLSQWITGEAARADGHAW 180

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA++D +L G+GT++ DDP+L  R        P R ++D  F++  D+++       PV 
Sbjct: 181 RARADLVLTGLGTIVHDDPQLNVR-AVSTPRQPRRGVVDGQFRVPEDARLFDGE---PVW 236

Query: 247 IVTENDDPVLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           + T   D   A     +N+ ++          DL  ++  L       + VE GA ++ +
Sbjct: 237 VFTARQDHAKAERLASRNVEVVCLPDASGEHVDLPGMMRWLGAHECNEVHVEAGAGLSGA 296

Query: 302 FINSRLVDSIILYRSQIVIGEGG--IPSP-LEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
            + +  VD +++Y + +++G+    +  P LE     + +        G DV L+     
Sbjct: 297 LLAADCVDELLVYLAPVLLGDAAGMVRLPVLERLDAARRYAFTDLVRVGEDVRLQ-ARDP 355

Query: 359 LCLQEL 364
              Q L
Sbjct: 356 ARWQAL 361


>gi|313203842|ref|YP_004042499.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-aminO-6-(5-phosphoribosylamino)uracil reductase
           [Paludibacter propionicigenes WB4]
 gi|312443158|gb|ADQ79514.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Paludibacter propionicigenes WB4]
          Length = 360

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 100/329 (30%), Positives = 166/329 (50%), Gaps = 16/329 (4%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65
             +M   L+ +   VG  + NP V  ++V +  +IG G     G  HAE  A+    E  
Sbjct: 20  ELYMHRCLQLAELGVGYVAPNPMVGAVLVCNDKIIGEGYHHRYGEAHAEPNAINSVKEVE 79

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
               +T YV+LEPCSHYG++PPCA  I+  GI RVV+   DP+ +V+G+G+  L   G+ 
Sbjct: 80  LLGQSTLYVSLEPCSHYGKTPPCADLIVSSGIPRVVIGTLDPNPKVAGKGVAKLRNAGVE 139

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG----SVPITGFISK 180
           ++  ++E E +     +   Q ++R ++ LK A ++D  +           + I+  I++
Sbjct: 140 VIVGVLEEECRELNKRFFIFQEQRRPYVLLKWAQTRDGFMDRVRTDVSEPPLQISNNITR 199

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              H +RA++ +ILVG  TVL D+P LT R       SP+RI +D   ++  +  ++  +
Sbjct: 200 QLTHKMRAENQSILVGANTVLLDNPSLTVR--NWSGRSPVRIAIDRQRRIPDNFNLLDGS 257

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
           L    I+ TE D          K    I  D   ++ +LT L  R + S+LVEGG  + +
Sbjct: 258 LQ--TIVFTEKDVENRPRIEFVK----INFDSNSVETILTELYKRNIHSVLVEGGPTILN 311

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPL 329
           SFI++   D   +  + + I   G+ +P 
Sbjct: 312 SFIDAGCWDEANIEIAPVRI-NEGVAAPF 339


>gi|299138351|ref|ZP_07031530.1| riboflavin biosynthesis protein RibD [Acidobacterium sp. MP5ACTX8]
 gi|298599597|gb|EFI55756.1| riboflavin biosynthesis protein RibD [Acidobacterium sp. MP5ACTX8]
          Length = 387

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 121/343 (35%), Positives = 180/343 (52%), Gaps = 17/343 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M +   D R +  AL  ++  VGL S NP+V C++V+DG+V+G G   Y    HAE+ AL
Sbjct: 1   MSLLPHDERHLQRALDLAQEAVGLASPNPTVGCVLVRDGVVLGEGAHHYDERDHAEIAAL 60

Query: 61  EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           ++A   G   +GATAYVTLEPCSH GR+ PCA  +I  GI R VV   DP+  VSG GL 
Sbjct: 61  KQAASLGHTPQGATAYVTLEPCSHQGRTGPCADALIAAGIARCVVATVDPNPLVSGGGLA 120

Query: 118 WLSQKGIIVDRMMES-----EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG---- 168
            L   GI V     +       +    A+      +R  +TLK AVS D  +  A     
Sbjct: 121 KLQAAGIEVVVADPASALAQRTRRLNDAFAHWIQHRRPFVTLKAAVSVDGKLAPAPSVRT 180

Query: 169 -CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPH 227
                 +TG  ++  VH LR + DAIL GIGTVLADDP LT R    +  S +R++LD  
Sbjct: 181 ANQPHWLTGEAARADVHRLRHEVDAILTGIGTVLADDPSLTDRSGLPRRRSLLRVVLDSD 240

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILV 283
            +  L+S+++++A    +++ +         A     + ++         +L+  L  L 
Sbjct: 241 LRTPLNSQLVRSAGSDLLLLCSRTAPADREAALSDCGVEVLRLSGSGGHLNLRAALDTLA 300

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            R + S+L+EGG+++  S ++  LVD + LY ++  +G   IP
Sbjct: 301 QRNIISVLIEGGSSLNGSLLHEGLVDKLTLYYAECELGLDAIP 343


>gi|297815908|ref|XP_002875837.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321675|gb|EFH52096.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 579

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 97/369 (26%), Positives = 170/369 (46%), Gaps = 19/369 (5%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           + DA F+  A   +    GLTS +P+  C+I    G V G G     G   AE  A+E A
Sbjct: 29  AIDAAFIRRAADLAEMSAGLTSPHPNFGCVIATSSGKVAGEGYLYAQGTKPAEALAVEAA 88

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE +RG+TAY+ +EP   +G     +  +++ GI RVVV +  P   + G  ++ L  +G
Sbjct: 89  GEFSRGSTAYLNMEPGDCHGDHTAVS-ALVQAGIDRVVVGIRHPLQHLRGSAIRELRSQG 147

Query: 124 IIVDRMMESE-----------GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172
           I V+ + E               +     + R   +     LK A++ D  I  +   + 
Sbjct: 148 IEVNVLGEDFESKVLEEARKSCLLVNAPLIHRACSRVPFSVLKYAMTLDGKIAASSGHAA 207

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
            I+  +S+ +V  LR  SDA++VG  TV  DDP LT R    Q H+P RI++     L  
Sbjct: 208 WISSKLSRTRVFELRGGSDAVIVGGNTVRQDDPRLTAR--HGQGHTPTRIVMTQSLDLPE 265

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
            + +   A ++ +++               K + ++  D  + ++++     RG  S+L 
Sbjct: 266 KANLWDVAEVSTIVVTQRGARKSFQKFLASKGVEVVEFDMLNPREVMEYFHLRGYLSILW 325

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           E G  +A S I+S ++  ++ + +  +IG    PSP+ +  + +    +       DVC 
Sbjct: 326 ECGGTLAASAISSSVIHKVVAFVAPKIIGGSKAPSPVGDLGMVEMTQALNLI----DVCY 381

Query: 353 EYIGKNLCL 361
           E +G ++ +
Sbjct: 382 EQVGPDMLV 390


>gi|222528581|ref|YP_002572463.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222455428|gb|ACM59690.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 371

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 109/344 (31%), Positives = 164/344 (47%), Gaps = 12/344 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GE 65
            +M+ AL  ++    L   NP V C+IVK+G VIG+G     G  HAEV A+E+A   G 
Sbjct: 8   YYMNMALELAKKASPLVLPNPRVGCVIVKNGTVIGKGYHQKYGEKHAEVLAIEDAIKNGY 67

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
             + AT YVTLEPC H+G+ PPC   II+ GI++VVV   DP+  V+G+G+Q L Q GI 
Sbjct: 68  LLKNATMYVTLEPCCHFGKQPPCTDAIIKSGIKKVVVATKDPNPLVNGKGIQILKQHGIE 127

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +++ +++ E +     +         +I +K+A S D  I                  VH
Sbjct: 128 VIEGVLQKEAESINKDFFKYMKTGIPYIAIKVAQSIDGKIATPSNKRFLFNTEEENVFVH 187

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR +  AILV + TV++D+P L  R  G     P R++LD   ++ L+  I+KTA    
Sbjct: 188 SLRQKYMAILVSVNTVISDNPILNARY-GQIVRQPTRVVLDSKLRIPLECNIVKTADKYS 246

Query: 245 VIIVTEN--DDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAA 297
             IV     +D        +K I II+         DL    + L  + + S+LVEGG+ 
Sbjct: 247 TYIVCSENVNDIQKIDLLSQKGIKIIFAKSSEDGHLDLSDAFSKLAQQKIVSVLVEGGSL 306

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341
           +    +  R+ D        + IG       +     E  F  +
Sbjct: 307 LNFFLLKQRIADYWYSLIFNVFIGGQDTKGVVGAEGFEDFFPKL 350


>gi|284033021|ref|YP_003382952.1| riboflavin biosynthesis protein RibD [Kribbella flavida DSM 17836]
 gi|283812314|gb|ADB34153.1| riboflavin biosynthesis protein RibD [Kribbella flavida DSM 17836]
          Length = 344

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 111/361 (30%), Positives = 161/361 (44%), Gaps = 31/361 (8%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQAL 60
             S  D  +M  A+  +   +G T  NP V C+I  +DG   G G  A  G PHAEV AL
Sbjct: 3   NASPIDVAWMRRAIELAARGLGSTHPNPVVGCVITGRDGHPAGEGFHAVAGGPHAEVAAL 62

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AG+ ARG TAYVTLEPC+H GR+ PCA  +IE G+ RV+  V DP+ + +G   +  S
Sbjct: 63  RMAGDRARGGTAYVTLEPCNHTGRTGPCADALIEAGVARVLYAVPDPNRQAAGGADKLRS 122

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           +   +   ++ +E +   H +L      R  +T K A + D         S  ITG  ++
Sbjct: 123 KNVHVEQGLLRAEAEAVNHVWLHSVRMGRPFVTWKFATTLDGRSAAPDRSSRWITGEQAR 182

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIK 238
             VH  RA+ DAI VG  TVL DDPELT R    +     P+R+++    ++   +++  
Sbjct: 183 ADVHRQRAECDAIAVGTQTVLTDDPELTVRDAQDRPVGRQPLRVVV-GDREIPATARV-- 239

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
                                 R      +     D  ++L  L    +  L +EGG  +
Sbjct: 240 ----------------------RNDRAETLLLPTHDPAEVLRQLDDHHIRHLWLEGGPTL 277

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL---EKNFMCVRRDYFGSDVCLEYI 355
           A +F+ S LVD I+ Y +  V+G G               + F        G DV L   
Sbjct: 278 AAAFLRSGLVDQIVAYVAPAVLGSGFAAIGDLGAESIDHLRRFQLADVTRLGDDVRLTLT 337

Query: 356 G 356
            
Sbjct: 338 P 338


>gi|15805190|ref|NP_293877.1| riboflavin-specific deaminase [Deinococcus radiodurans R1]
 gi|6457821|gb|AAF09742.1|AE001878_1 riboflavin-specific deaminase [Deinococcus radiodurans R1]
          Length = 357

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 120/353 (33%), Positives = 183/353 (51%), Gaps = 16/353 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIV----IGRGVTAYGGCPHAEVQALEE 62
           DA +M  AL  +   +G TS NP V C+IV+DG +    +GRG     G PHAEV AL E
Sbjct: 8   DAEYMQLALNEAAKGLGRTSPNPPVGCVIVRDGEIASEIVGRGFHPKAGEPHAEVFALRE 67

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH GR+PPCA  +I  G+ RVVV   DP+ +V+GRGL+ L   
Sbjct: 68  AGERARGATAYVTLEPCSHDGRTPPCADALIAAGVARVVVAAGDPNPQVNGRGLEKLRAA 127

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E+        + +     R H+  K A++ D  +     G+ P++G  ++ 
Sbjct: 128 GIEVATGVLEAAAVRQQAGFRSLVTRGRPHVIYKYAMTLDGKVAALNEGNGPVSGPEARA 187

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +V   R + DA+ VG  T L D+P+L  R        P  ++ DP   L   ++ ++   
Sbjct: 188 RVMAWRNEVDAVAVGARTALLDNPQLNVRGLDG-GRDPRAVLFDPEGHLPASARAVREG- 245

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
              V+++ E     L    R     +       L+  L  L G GV +LL+EGG  +A +
Sbjct: 246 --TVLVLREGRSTPLERDPR-----VTVLHAHSLQGALEQLAGLGVATLLLEGGPTLASA 298

Query: 302 FINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEKNFMCVRRDYFGSDVCL 352
           F  + L+D + ++ +  ++G G  P  +P+   +        R +  G+DV +
Sbjct: 299 FFEAGLIDELRVFVAPKLLGAGLSPLLAPVRSMHAATELAVERVEVVGNDVLV 351


>gi|319900207|ref|YP_004159935.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bacteroides helcogenes P 36-108]
 gi|319415238|gb|ADV42349.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bacteroides helcogenes P 36-108]
          Length = 347

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 107/332 (32%), Positives = 170/332 (51%), Gaps = 18/332 (5%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65
            ++M   ++ ++  +  T+ NP V  +IV DG +IG G   + G  HAEV A+    +  
Sbjct: 3   EKYMRRCIQLAQNGLCNTAPNPMVGAVIVCDGKIIGEGYHVHCGEAHAEVNAIRSVKDPS 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
             + AT YV+LEPCSHYG++PPCA  IIE  I R+++   DP  +V+GRG+Q L   G  
Sbjct: 63  LLQRATIYVSLEPCSHYGKTPPCADLIIEKQIPRIIIGCMDPFSKVAGRGIQKLKDAGRE 122

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA--GCGSVPITGFISKNQ 182
           ++  ++E E K  +  ++T    +R +ITLK A S D  I         V ++   +   
Sbjct: 123 VIVGVLEEECKSLIRRFVTFHTLRRPYITLKWAESADGYIDSYRTNGNPVVLSSPFTSML 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  R +  AI+VG  T   D+P L  R      H P+RI+LD    L  D  +     L
Sbjct: 183 VHKQRTEHSAIMVGTHTAKLDNPRLNVR--HWYGHPPVRIVLDKDRALPTDLHLFDGDTL 240

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAH 300
              ++ TE    +L       N+  +  + +   L +++  L  RG+ SLLVEGG+ +  
Sbjct: 241 --TLVFTETPHDLLP------NVEYLPINYQQDILPQIMEELYTRGLQSLLVEGGSILLQ 292

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
           SFI++ + D I +  + I++   G+ +P   G
Sbjct: 293 SFIDTGIWDEIFVEEAPILL-HSGVKAPEISG 323


>gi|147797438|emb|CAN60371.1| hypothetical protein VITISV_041263 [Vitis vinifera]
          Length = 587

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 94/368 (25%), Positives = 164/368 (44%), Gaps = 18/368 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D+  +  A   +    G TS +P+  C+I   G V+G G     G   AEVQA+E AG
Sbjct: 22  ALDSFHVRRAAEIADKSAGFTSPHPNFGCVIATAGKVVGEGYLYAQGTKPAEVQAVEAAG 81

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E  RGATAY+ +EP   +G     +  +++ GI R VV +  P   +    L+ +  +G+
Sbjct: 82  ELCRGATAYLNMEPGDCHGDRTAVS-ALVKAGITRXVVGIRHPLQHLRSHALRAMRSEGL 140

Query: 125 IVDRMMESE-----------GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP 173
            VD + E               I     + R   +     LK A++ D  I  +   +  
Sbjct: 141 QVDVLGEDLKSKIVEEALKSCLIVNAPLIYRAASRVPFSVLKYAMTLDGKIAASSGHASW 200

Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233
           I+   S+ +V  LR +SDAI+VG  TV  D+P+LT R  G   H P+RI++     L   
Sbjct: 201 ISSKESRYRVFELRGRSDAIVVGGNTVRKDNPQLTARHGG--GHVPIRIVMSRTLNLPEV 258

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
           + +   + +  +++               K + ++  D  + + ++     RG  S+L E
Sbjct: 259 ANLWDVSSVPTIVVTQRXARKSFQKFLASKGVEVVEFDILNTRDVMEYFYDRGYLSILWE 318

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
            G  +A S I+S ++  +  + +  +IG    P+P+ E  + +    +       D   E
Sbjct: 319 CGGTLAASAISSGIIHKVFAFVAPKIIGGKNAPTPVGELGMVEMTQALDLI----DFSYE 374

Query: 354 YIGKNLCL 361
            IG ++ +
Sbjct: 375 QIGPDMLI 382


>gi|311745056|ref|ZP_07718841.1| riboflavin biosynthesis protein RibD [Algoriphagus sp. PR1]
 gi|311302325|gb|EAZ81787.2| riboflavin biosynthesis protein RibD [Algoriphagus sp. PR1]
          Length = 340

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 106/337 (31%), Positives = 167/337 (49%), Gaps = 15/337 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR- 68
           +M  AL  +    G  S NP V C+IVK+  +IG G     G  HAEV A+    ++   
Sbjct: 6   YMRRALELAELGRGKVSPNPVVGCVIVKEDKIIGEGYHQKYGEAHAEVNAVNSVEDQTDI 65

Query: 69  -GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
            G+T YVTLEPC+H+G++PPCA  +++  + +VV+   D +  V G+G+Q L + GI + 
Sbjct: 66  VGSTVYVTLEPCAHFGKTPPCANLLVDKKVGKVVIAAFDSNPLVGGKGIQILEEAGIEVE 125

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +++ E +     + T+  +KR ++ LK A +QD  +  +   S  I+   S+  VH  
Sbjct: 126 TGLLQEEARWQNRRFFTQIEKKRPYVILKWAQTQDGFVARSDYSSKWISNSSSRRLVHQW 185

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA+ DAI+VG  T   DDP L  R       +P+R+++D   +LS   K+   A   P I
Sbjct: 186 RAEEDAIMVGKNTAKYDDPALNVR--DWVGKNPLRLVIDSKLELSQSLKLFDQA--VPTI 241

Query: 247 IVTENDDPVLALAFRKKNINIIYC-DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
                            N+  +       L ++L  L  R + SLLVEGG+ + + FI  
Sbjct: 242 CYNT------QKTEESGNLEFVKLKPGFSLDQILEDLHNRNIQSLLVEGGSFLLNKFIEL 295

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
            L D   ++ S+   GE GI +PL      +N   + 
Sbjct: 296 GLWDEARIFTSRNKFGE-GIKAPLIPKPSSENIPVLE 331


>gi|323439574|gb|EGA97294.1| riboflavin specific deaminase [Staphylococcus aureus O11]
 gi|323442021|gb|EGA99657.1| riboflavin specific deaminase [Staphylococcus aureus O46]
          Length = 343

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 113/352 (32%), Positives = 166/352 (47%), Gaps = 14/352 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A++ +    G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A GA
Sbjct: 1   MDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAEGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           T Y+TLEPCSH+G +PPC   II+C I +VV      D  +   G + L   GI V+ + 
Sbjct: 61  TIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDETLRDHGIEVECVD 118

Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
           +         +   + ++   IT+K++ S D         S  IT    K  V+ LR + 
Sbjct: 119 DERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRH 178

Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
           DA+L G  TV  DDP+ T R+      +P+++IL     +  + +I +     P+ I TE
Sbjct: 179 DAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIYTE 235

Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
           N +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  +D 
Sbjct: 236 NPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDE 291

Query: 311 IILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
            ILY +  +IG  G         + E      F  V  +    +V L    K
Sbjct: 292 FILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 343


>gi|146295833|ref|YP_001179604.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409409|gb|ABP66413.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 371

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 106/344 (30%), Positives = 165/344 (47%), Gaps = 12/344 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GE 65
            +M  AL  ++    L   NP V  +IVK+G +IG+G     G  HAEV A+E+A   G 
Sbjct: 8   YYMHIALELAKKASPLVLPNPRVGSVIVKNGTIIGKGYHQKYGEKHAEVLAIEDAIKNGH 67

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
             + +T YV+LEPC H+G+ PPC   II+ GI++VVV   DP+  V+G+G+Q L Q GI 
Sbjct: 68  SLKNSTMYVSLEPCCHFGKQPPCTDAIIKSGIKKVVVATKDPNPLVNGKGIQILKQHGIK 127

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V+ ++E E +     +         +I +K+A S D  I                  VH
Sbjct: 128 VVEGILEKEAESVNKEFFKYMKTGIPYIAIKVAQSIDGKIAKPSGERFIFNTEDENVFVH 187

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR +  A +V + TV++D+P L  R  G     P+R++LD   ++ L+S I+KT+    
Sbjct: 188 SLRQKYMATMVSVNTVISDNPILNARY-GQIVRQPIRVVLDSKLRIPLESNIVKTSDEYS 246

Query: 245 VIIVTEN--DDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAA 297
              V     +D        +K I II+         DL   L+ L  + + S+LVEGG+ 
Sbjct: 247 TYTVCSENVNDTQKIEFLSQKGIKIIFAKSSEDGHLDLLDALSKLAQQKIVSVLVEGGSF 306

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341
           +  S +  R+ D        + IG       +     E+ F  +
Sbjct: 307 LNFSLLKQRIADYWYSLIFNVFIGGQNTKGVVGAEGFEQFFPKL 350


>gi|49484015|ref|YP_041239.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|257425881|ref|ZP_05602305.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257428548|ref|ZP_05604946.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257431182|ref|ZP_05607559.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257433863|ref|ZP_05610221.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436780|ref|ZP_05612824.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus M876]
 gi|282904343|ref|ZP_06312231.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906168|ref|ZP_06314023.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282909085|ref|ZP_06316903.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282911393|ref|ZP_06319195.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914562|ref|ZP_06322348.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus M899]
 gi|282919530|ref|ZP_06327265.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus C427]
 gi|282924908|ref|ZP_06332574.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus C101]
 gi|283958523|ref|ZP_06375974.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293503640|ref|ZP_06667487.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510656|ref|ZP_06669361.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus M809]
 gi|293537197|ref|ZP_06671877.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295428344|ref|ZP_06820973.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297590692|ref|ZP_06949330.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus MN8]
 gi|49242144|emb|CAG40844.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|257271575|gb|EEV03721.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257275389|gb|EEV06876.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257278130|gb|EEV08778.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257281956|gb|EEV12093.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284131|gb|EEV14254.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus M876]
 gi|282313274|gb|EFB43670.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317340|gb|EFB47714.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus C427]
 gi|282321743|gb|EFB52068.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325088|gb|EFB55398.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327349|gb|EFB57644.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331460|gb|EFB60974.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595961|gb|EFC00925.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790672|gb|EFC29489.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290920042|gb|EFD97110.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095306|gb|EFE25571.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466547|gb|EFF09068.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus M809]
 gi|295127744|gb|EFG57381.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297575578|gb|EFH94294.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus MN8]
 gi|312437774|gb|ADQ76845.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|315195682|gb|EFU26069.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus
           subsp. aureus CGS00]
          Length = 347

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 113/354 (31%), Positives = 168/354 (47%), Gaps = 14/354 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +FM  A++ +    G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A 
Sbjct: 3   QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           GAT Y+TLEPCSH+G +PPC   II+C I +VV      D  +   G + +   GI V+ 
Sbjct: 63  GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDETIRDHGIEVEC 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + +         +   + ++   IT+K++ S D         S  IT    K  V+ LR 
Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA+L G  TV  DDP+ T R+      +P+++IL     +  + +I +     P+ I 
Sbjct: 181 RHDAVLTGRHTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIY 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           TEN +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  +
Sbjct: 238 TENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293

Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           D  ILY +  +IG  G         + E      F  V  +    +V L    K
Sbjct: 294 DKFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347


>gi|332157888|ref|YP_004423167.1| Riboflavin biosynthesis protein ribD (ribD) [Pyrococcus sp. NA2]
 gi|331033351|gb|AEC51163.1| Riboflavin biosynthesis protein ribD (ribD) [Pyrococcus sp. NA2]
          Length = 349

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 119/364 (32%), Positives = 182/364 (50%), Gaps = 25/364 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D ++M  AL  +R   G  + NP V  +IVK+G VIG+G   Y G  HAEV A+E+A   
Sbjct: 4   DEKYMKLALELARLGEGRVNPNPMVGAVIVKNGKVIGKGHHEYFGGKHAEVNAIEDAKRN 63

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G   RGAT YVTLEPC+H+G+ PPC   II+ GI RVVV   DP+  V+G G++ L + G
Sbjct: 64  GYSVRGATMYVTLEPCAHWGKQPPCVDRIIKEGISRVVVATLDPNPMVNGEGVKRLMEAG 123

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +   +++ E +     Y          + +K+A++ D  I      S  IT   ++ +
Sbjct: 124 IEVEVGILKEEAEKLNEIYFKYIKTSMPFVAIKLALTLDGFIATKSFSSKWITNEKARLK 183

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           V  +R +  AI+VG  TV  D+P L CR+NG ++   +++ILD H   + + K +     
Sbjct: 184 VQEIRRRFMAIMVGANTVTIDNPRLNCRVNGCRDK--VKVILDRHG-TTANRKDLNVFKE 240

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
             VI+ TE+D         K   N         K++L IL   G+ S+L+EGG  +A  F
Sbjct: 241 GKVIVFTESD---------KSWDNAKVIKETSPKRILEILGKMGIDSVLIEGG-RIACQF 290

Query: 303 INSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
           +     D + L+    +IG G  P     +++  L      +  + FG    +E      
Sbjct: 291 L--PFADKLYLFYGNKLIGNGISPFECLEVDDVNLALKVELLNIETFGDSYLVEARP--- 345

Query: 360 CLQE 363
           C +E
Sbjct: 346 CSRE 349


>gi|241763274|ref|ZP_04761331.1| riboflavin biosynthesis protein RibD [Acidovorax delafieldii 2AN]
 gi|241367549|gb|EER61836.1| riboflavin biosynthesis protein RibD [Acidovorax delafieldii 2AN]
          Length = 368

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 106/351 (30%), Positives = 166/351 (47%), Gaps = 11/351 (3%)

Query: 12  SAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
             ALR +   + +++ NP V C++V  DG ++G+G T   G PHAEV AL +A   G + 
Sbjct: 9   REALRQAARALFISNPNPRVGCVLVDSDGTILGKGFTQQAGGPHAEVMALRDAATGGRDV 68

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           RGATAYVTLEPC+H GR+ PC+  +I  GI RVV  ++DP+  V+G+G   L   G+ + 
Sbjct: 69  RGATAYVTLEPCAHQGRTGPCSDALISAGIGRVVASIEDPNPLVAGQGFARLRAAGVAVE 128

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
                 E +     + +R V     +  K A S D    ++   S  IT   ++   H  
Sbjct: 129 VGPGACESRELNIGFFSRMVRGVPWVRAKTAASLDGATALSNGASQWITSPAARADGHAW 188

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA++ A+L GIGTVL D+P L  R        P  +++D   +   D+ +        + 
Sbjct: 189 RARACAVLTGIGTVLDDNPRLDVRALQ-TPRQPHVVVVDSQLQTPPDAHLFIAERACYIY 247

Query: 247 IVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
              +ND    AL  R   +  +       DL  +L  L  RG+  L VE G  +  S + 
Sbjct: 248 TAVQNDVKEAALQARGATVIHLPGPHGKVDLPAMLRDLAQRGMNELHVEAGHKLTGSLLR 307

Query: 305 SRLVDSIILYRSQIVIGEG---GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
             LVD +++Y +  ++G G       P +             +  G+D+ +
Sbjct: 308 EGLVDEMLVYLAPTLLGPGLSIANIGPFDNLAQGVAMDFTSVERVGADIRI 358


>gi|294083733|ref|YP_003550490.1| bifunctional deaminase-reductase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663305|gb|ADE38406.1| bifunctional deaminase-reductase [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 366

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 142/360 (39%), Positives = 192/360 (53%), Gaps = 18/360 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  A+  +R  VG  + NP V C+I    G +IG G TA  G PHAE  AL  AG+ A G
Sbjct: 1   MRYAISEARKAVGRAAENPPVGCVIIAASGQLIGAGHTARTGRPHAETVALAMAGQRAHG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
            TAYVTLEPC+H+G++PPCA  +IE GIRRVV+   DPD RV+G+G+  L   GI ++  
Sbjct: 61  GTAYVTLEPCAHHGQTPPCATALIEAGIRRVVIACQDPDRRVNGKGVTMLRAAGIDVITD 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +        +  +L R V KR  +T+K A S D  I +     V +T    +  VH+LR+
Sbjct: 121 IGSDMAYSVMQGFLHRMVHKRPLVTIKTATSLDGGIALGDGRKVWLTSPPMRRYVHVLRS 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           +SDAIL GIGT+LADDPE+TCRL GL+  SP R ILD   +    +KI++     P +I 
Sbjct: 181 KSDAILTGIGTILADDPEMTCRLPGLEHDSPSRFILDSQLRCPPGAKILQNNNAVPTVIF 240

Query: 249 T-ENDDPVLALAFRKKNINIIYC-----------DCRDLKKLLTILVGRGVTSLLVEGGA 296
             E   P   +A  K    I+                DL+K+L  L   GV +LLVE G+
Sbjct: 241 CAETASPDARIALEKSGAVIVPMAVDKAQDDGLQKRLDLQKILRYLGDAGVNNLLVEAGS 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCVRRDYFGSDVCL 352
           ++  S I   LVD I   +SQ ++G   IP  SPL+   L +   +        G D   
Sbjct: 301 SIVTSIIADDLVDVIHWTQSQHLLGSDAIPAISPLKLVALPEQTRYTETHHQQIGRDRLT 360


>gi|320139809|gb|EFW31673.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus MRSA131]
          Length = 343

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 113/352 (32%), Positives = 166/352 (47%), Gaps = 14/352 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A++ +    G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A GA
Sbjct: 1   MDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAEGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           T Y+TLEPCSH+G +PPC   II+C I +VV      D  +   G + L   GI V+ + 
Sbjct: 61  TIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDETLRAHGIEVECVD 118

Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
           +         +   + ++   IT+K++ S D         S  IT    K  V+ LR + 
Sbjct: 119 DERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRH 178

Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
           DA+L G  TV  DDP+ T R+      +P+++IL     +  + +I +     P+ I TE
Sbjct: 179 DAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIYTE 235

Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
           N +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  +D 
Sbjct: 236 NPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDE 291

Query: 311 IILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
            ILY +  +IG  G         + E      F  V  +    +V L    K
Sbjct: 292 FILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 343


>gi|302871184|ref|YP_003839820.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574043|gb|ADL41834.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 371

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 104/359 (28%), Positives = 175/359 (48%), Gaps = 15/359 (4%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GE 65
            +M+ AL  ++    L   NP V C+IVK+G +IG+G     G  HAEV A+E+A   G 
Sbjct: 8   YYMNMALELAKKASPLVLPNPRVGCVIVKNGTIIGKGYHQKYGEKHAEVLAIEDAIKNGN 67

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
             + AT YV+LEPC H+G+ PPC + II+ GI++V++   DP+  V+G+G+Q L Q GI 
Sbjct: 68  SLKNATMYVSLEPCCHFGKQPPCTEAIIKSGIKKVIIATRDPNPLVNGKGIQILKQHGIE 127

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V+ +++ E +     +     +   +I +K+A S D  I                  VH
Sbjct: 128 VVEGVLQKEAESVNKEFFKYMKKGIPYIAIKVAQSIDGKIATPSNKRFLFNTDDENVFVH 187

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR +  A LV + TV++D+P L  R   +    P+R+++D + ++ L+  I+KT+    
Sbjct: 188 SLRQKYMATLVSVNTVISDNPILNVRYGEI-IRQPIRVVIDTNLRIPLECNIVKTSDEYS 246

Query: 245 VIIVTEN--DDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAA 297
             IV     +D        +K I II+         +L  + + L  + + S+LVEGG+ 
Sbjct: 247 TYIVCSENVNDTQKIKLLSQKGIKIIFAKQSEDGHLELSDVFSKLAQQKIISVLVEGGSM 306

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV---RRDYFGSDVCLE 353
           +  S +  R+ D        + IG       +     E+ F  +   +   F +   +E
Sbjct: 307 LNFSLLKKRIADYWYSLIFNVFIGGQNTKGVVGAEGFEEFFPKLVNPKVTIFKNSTIIE 365


>gi|74318186|ref|YP_315926.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Thiobacillus denitrificans ATCC 25259]
 gi|74057681|gb|AAZ98121.1| Riboflavin biosynthesis protein RibD
           diaminohydroxyphosphoribosylaminopyrimid ine deaminase +
           5-amino-6-(5- phosphoribosylamino)uracil reductase
           oxidoreductase protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 359

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 125/365 (34%), Positives = 191/365 (52%), Gaps = 16/365 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  ++ D+RFMS AL+ +   +  TS NP V C++VKD  ++G G     G PHAE+ AL
Sbjct: 1   MRFTAADSRFMSRALQLAARGLFTTSPNPRVGCVLVKDDRIVGEGWHERAGTPHAEIHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE ARGATAYVTLEPCSH+GR+PPCA+ +I+ G+ RVV  + DP+  V+G G+  L+
Sbjct: 61  RAAGEAARGATAYVTLEPCSHHGRTPPCAEALIDAGVSRVVAAMTDPNPLVAGGGISMLT 120

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI  +  +ME+E +     +++R   +R  + LK A + D    +A   S  ITG  +
Sbjct: 121 LAGIAAEVGLMEAEARALNPGFVSRMTRRRPWVRLKTASTLDGKTALANGASQWITGEAA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  V  LRA++ AIL G GTVLADDP +  R   +   +P+R+++D   +    + I+  
Sbjct: 181 RADVQRLRARACAILTGSGTVLADDPRMNVRDFDI-GRAPLRVVVDSTLRTPASAAIL-- 237

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGG 295
               P ++   +  P    A       +I     D +     LL +L  RGV  + VE G
Sbjct: 238 ----PALVACRDASPATRTALEAAGAEVIEMPGVDGRVDLAALLALLAQRGVNEVHVEAG 293

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           AA+  + + + LVD  + Y + + +G+        +PL        F        G D+ 
Sbjct: 294 AALNGALLAAGLVDEWVAYLAPLAVGDDARGLFAHAPLATLAEAARFRLQDLRQIGGDLR 353

Query: 352 LEYIG 356
           L  + 
Sbjct: 354 LTLLP 358


>gi|326562323|gb|EGE12649.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis
           103P14B1]
 gi|326575527|gb|EGE25452.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis
           101P30B1]
          Length = 350

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 115/364 (31%), Positives = 175/364 (48%), Gaps = 41/364 (11%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63
            D  +M  A+  ++  +  T  NP+V C++VKD +VIG+G     G PHAE+ AL +A  
Sbjct: 9   QDIYYMQLAIAEAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKA 68

Query: 64  -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
            G + +GATAYVTLEPCSH GR+PPCA  +I   +RRVVV   DP+ +V+G G++ L   
Sbjct: 69  RGFDTKGATAYVTLEPCSHTGRTPPCADALIAANLRRVVVASLDPNPKVAGNGIKKLQNA 128

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI ++  + + +       +L        ++ LK A S D     A   S  ITG  ++ 
Sbjct: 129 GIEVLVGVCDQQAAALNLGFLKAMRTGLPYVRLKTASSLDGRTATASGESKWITGIEARE 188

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----HSPMRIILDPHFKLS--LDS 234
            V  LRA+S AI+ G GT++AD+P LT R   L         P  +I+D   +LS   D 
Sbjct: 189 DVQRLRAKSAAIVTGSGTIIADNPALTVRSKQLGVDLHMLPKPKVVIVDRRNRLSDLDDY 248

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGVTSLLVE 293
           +++                                    DL  LL  L        +L+E
Sbjct: 249 QVLNRDDTLIW--------------------------RNDLMSLLKTLVSQYACYDVLIE 282

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDV 350
            G+ ++ +FI   LVD +I+Y++  ++G+   P     L+    +  F     D  G+D+
Sbjct: 283 AGSELSGTFITEGLVDELIVYQAPCILGQDARPMFACQLDHLAKQYRFGLHSADIIGNDI 342

Query: 351 CLEY 354
            L Y
Sbjct: 343 RLIY 346


>gi|312887826|ref|ZP_07747413.1| riboflavin biosynthesis protein RibD [Mucilaginibacter paludis DSM
           18603]
 gi|311299645|gb|EFQ76727.1| riboflavin biosynthesis protein RibD [Mucilaginibacter paludis DSM
           18603]
          Length = 343

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 109/351 (31%), Positives = 167/351 (47%), Gaps = 26/351 (7%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-------A 63
           M   L  ++  +G  S NP V  +IV  G +IG G     G  HAEV A+         A
Sbjct: 1   MLRCLELAKLGLGSVSPNPMVGAVIVHQGRIIGEGYHQRYGEAHAEVNAVNNVINRFDDA 60

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            +    +  YV+LEPC+HYG++PPCA  II+  I  VVV   DP  +V+G+G++ L   G
Sbjct: 61  AQLLSESVIYVSLEPCAHYGKTPPCADLIIKHQIPEVVVGCRDPFDQVNGKGIEKLQAAG 120

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + +   ++E E       + TR ++ R +I LK A ++D     A    + ITG  S+  
Sbjct: 121 VKVTVGVLEKECLDLNKRFFTRILKHRPYIILKWAQTEDCFFAPADQSQLWITGEESRKL 180

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  R + DAILVG  T   D+P+L  R       SP RI++D   +LS +  +    + 
Sbjct: 181 VHQWRGEEDAILVGKNTAAIDNPQLNVRYG--PGKSPKRIVIDRRLELSKELYLFDQTVE 238

Query: 243 APVI--IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
             V   + TE D  V  ++    N  +        + +L  L  + + S+++EGGA    
Sbjct: 239 TFVFNEVKTEFDGKVKYISLEDFNYYV-------PQYILYQLYLQDIQSVIIEGGATTLA 291

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
            FI   L D   ++   I + + GI +P  +G +      V  D  G+DV 
Sbjct: 292 HFIKDGLWDEARIFTGAITL-KKGIQAPQIKGDV------VSEDRVGNDVL 335


>gi|288957859|ref|YP_003448200.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Azospirillum sp.
           B510]
 gi|288910167|dbj|BAI71656.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Azospirillum sp.
           B510]
          Length = 376

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 152/370 (41%), Positives = 201/370 (54%), Gaps = 14/370 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           +P    D R M AAL  +   +G T  NP+V C++V+DG VIGRG T  GG PHAE +AL
Sbjct: 4   LPDPETDLRHMRAALALAGRGLGRTWPNPAVGCVLVRDGAVIGRGWTQPGGRPHAETEAL 63

Query: 61  EEAG---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
             A      A GATAYVTLEPC+HYGR+PPCA  ++E  + RVVV   DPD RV+G GL 
Sbjct: 64  ARARACSGGAEGATAYVTLEPCNHYGRTPPCALALVEARVARVVVACQDPDPRVAGGGLA 123

Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
            L   GI +   + E+E       +  R    R  +T KIA + D  I  A   S  ITG
Sbjct: 124 RLRDAGIAVTTGLCEAEALALNEGFFNRITRNRPLVTCKIASTLDGRIATATGESQWITG 183

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
             ++   H LRA  DAILVGIGT LADDPELTCRL GL++ SP+R+++D   +L   +K+
Sbjct: 184 PTARAWGHRLRAGHDAILVGIGTALADDPELTCRLPGLEDRSPVRVVMDSGLRLPATAKL 243

Query: 237 IKTALLAPVIIVTE-NDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSL 290
              A   P  +VT  + DP+ A A     + I+          D    LT L  RG+T L
Sbjct: 244 ATGARRIPTWVVTGPSPDPMRAGALAALGVEIVPAAADGDGRVDPAAALTALAARGITRL 303

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYF 346
           LVEGGAAVA + + + LVD +  +R+  +IG  G+P+     +        F        
Sbjct: 304 LVEGGAAVAGALLGAGLVDRLEWFRAASLIGGDGLPAVAGFGVGALAAMARFERTSVRDA 363

Query: 347 GSDVCLEYIG 356
           G+D+   Y  
Sbjct: 364 GADLAESYRR 373


>gi|145594417|ref|YP_001158714.1| riboflavin biosynthesis protein RibD [Salinispora tropica CNB-440]
 gi|145303754|gb|ABP54336.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Salinispora tropica CNB-440]
          Length = 353

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 119/369 (32%), Positives = 181/369 (49%), Gaps = 27/369 (7%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59
           M   S D   M  A+  +   +G TS NP V C+++   G V+G G  AY G PHAE+ A
Sbjct: 1   MAGVSVDEA-MRRAVDLAARGLGTTSPNPVVGCVLLDPGGQVVGEGFHAYAGGPHAEIVA 59

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           L  AGE ARG TA VTLEPC H GR+ PC+  +++ G+ RVV+ V DP+ + +  G   L
Sbjct: 60  LAHAGERARGGTAVVTLEPCDHTGRTGPCSTALVQAGVARVVIAVPDPN-QAASGGAATL 118

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              G+ +   +  +E +    A+LT       ++  K A + D     A   S+ IT   
Sbjct: 119 RAAGVRVDLGVRAAEAEAGNIAWLTSTRRGWPYLLWKYAATLDGRSAAADGTSMWITSEA 178

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTC---RLNGLQEHSPMRIILDPHFKLSLDSK 235
           ++  VH LR   DA+L G+GTVLADDP LT    R   L    P+R+++D   +    ++
Sbjct: 179 ARMDVHALRGTVDAVLAGVGTVLADDPRLTVRNLRDGSLAIRQPLRVVVDSAGQTPAGAR 238

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
           +   A  AP  I T ++            +        DL  LL  L  RGV + L+EGG
Sbjct: 239 VRDDA--APTWIATADE------------VGTDSAGRVDLPALLAALHQRGVRAALLEGG 284

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
             +A +F+ + LVD I+ Y +  ++G G  P+ L +  +      +  +       +  +
Sbjct: 285 PRLAGAFLAAGLVDKIVGYVAPRLLGAG--PTALADAGVTTITDAIDCEVID----VTQV 338

Query: 356 GKNLCLQEL 364
           G +L +  L
Sbjct: 339 GPDLRITAL 347


>gi|114794616|pdb|2HXV|A Chain A, Crystal Structure Of A
           Diaminohydroxyphosphoribosylaminopyrimidine Deaminase
           5-Amino-6-(5-Phosphoribosylamino)uracil Reductase
           (Tm1828) From Thermotoga Maritima At 1.80 A Resolution
          Length = 360

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 120/363 (33%), Positives = 183/363 (50%), Gaps = 24/363 (6%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
             F   A+  ++  +G  + NP V  ++VKDG +I  G   Y G PHAE  A+E A   G
Sbjct: 15  ETFXKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERXAIESARKKG 74

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E+ RGAT  VTLEPC H+G++PPC   IIE GI+ VV+   DP+  VSG G++     GI
Sbjct: 75  EDLRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNP-VSGNGVEKFRNHGI 133

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +++ ++E E K     ++T   +KR  + LK A + D  I      S  IT  + + +V
Sbjct: 134 EVIEGVLEEEVKKLCEFFITYVTKKRPFVALKYASTLDGKIADHRGDSKWITDKL-RFKV 192

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK-TALL 242
           H  R    A+LVG GTVL D+P+LTCRL   +  +P+R+ILD      L  K+ +     
Sbjct: 193 HEXRNIYSAVLVGAGTVLKDNPQLTCRL--KEGRNPVRVILDRKG--VLSGKVFRVFEEN 248

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           A VI+ TE+++        K            ++ +L  L  R + S+LVEGG+ V   F
Sbjct: 249 ARVIVFTESEEAEYPPHVEKA------LSDCSVESILRNLYERDIDSVLVEGGSKVFSEF 302

Query: 303 INSRLVDSIILYRSQIVIGEGG--IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
           ++    D +  + S  + G+G       L +  +   F  V  ++  S+  +E      C
Sbjct: 303 LDH--ADVVFGFYSTKIFGKGLDVFSGYLSDVSVPPKFKVVNVEFSDSEFLVEXRP---C 357

Query: 361 LQE 363
            +E
Sbjct: 358 SRE 360


>gi|218962081|ref|YP_001741856.1| riboflavin biosynthesis protein RibD [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730738|emb|CAO81650.1| riboflavin biosynthesis protein RibD [Candidatus Cloacamonas
           acidaminovorans]
          Length = 368

 Score =  302 bits (773), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 119/357 (33%), Positives = 190/357 (53%), Gaps = 15/357 (4%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            ++M  A++ +    G  S NP V  +IVK+  VI  G T   G  H+E+QAL++AG++A
Sbjct: 7   KQYMQRAIKVAEKARGKCSPNPFVGSVIVKNNQVISEGWTLEYGSDHSEIQALKKAGKKA 66

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           + AT +VTLEPCSHYG++PPCAQ II+ GI+ V + + DP+  V G+G+  L + GI V 
Sbjct: 67  KDATLFVTLEPCSHYGKTPPCAQAIIDAGIKEVYIGIYDPNPLVKGKGIAMLKEAGIDVH 126

Query: 128 RMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
                E     L  YL    ++R  +TLK A++ D         +  ITG  ++   H L
Sbjct: 127 YGFLEEKIRTQLECYLCYIQKERPFVTLKTALTLDGKYAAEDGTAHWITGKKAREYAHQL 186

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R+++D +L GI T+L DDP L  RL G     P+R++LDP+ K+ + S  +  +   P +
Sbjct: 187 RSENDVVLTGIMTILFDDPRLNVRLPG-NYKQPLRVVLDPYLKIPVLSYFVSISAKFPGM 245

Query: 247 IVTENDD--PVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
           ++T  D+     A   R+K + I   + +D    L ++L +L      S+L+E G+ +A 
Sbjct: 246 VITSPDNLQTDKADILRQKGVKIEALETKDGHFNLHEVLNLLYKMNYYSVLLETGSGIAE 305

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR-----DYFGSDVCL 352
           +F+   L+D II      ++G  G  SPL    +E  +  +           +DV +
Sbjct: 306 AFLKEELIDKIIFIYGAKILG--GTKSPLPNLGIESIYKALYIWKTSCRKIENDVVV 360


>gi|119384301|ref|YP_915357.1| riboflavin biosynthesis protein RibD [Paracoccus denitrificans
           PD1222]
 gi|119374068|gb|ABL69661.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Paracoccus denitrificans PD1222]
          Length = 325

 Score =  302 bits (773), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 124/352 (35%), Positives = 178/352 (50%), Gaps = 32/352 (9%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  +R  +G    NP+V C++V+DG+V+GRG T  GG PHAE  AL +AGE ARGA
Sbjct: 1   MRHALALARRGLGNVWPNPAVGCVLVRDGVVVGRGWTQPGGRPHAEAMALAQAGEAARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPC+H+G++PPCA+ ++  G+ RVV  + DPD RV+GRG   L   GI + + +
Sbjct: 61  TAYVTLEPCAHHGKTPPCAEALVRSGMARVVTALTDPDPRVTGRGHAILRAAGIEVAEGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            E+E +     +L+R    R  +TLK+A S D  I  A   S  ITG  ++  VH LR  
Sbjct: 121 CEAEAREVQRGFLSRIQRGRPMLTLKLAASFDGRIATASGESQWITGAQARRHVHALRLG 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DA++VG  T  AD P L  R  G     P+RI++          ++       P     
Sbjct: 181 HDAVMVGAETARADRPGLNVRGFG-PVRQPVRIVVSSR-------RLPDLPGEGP----- 227

Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
               P+  +A                +  +  L  RG+T +L EGG  +A S + + +VD
Sbjct: 228 -EHGPLWQVAGE-------------PEAFMAELGTRGLTRVLCEGGGVLAASLLRAGMVD 273

Query: 310 SIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
            +I Y + +V+G  G        LE       F  V     GSD+   ++  
Sbjct: 274 QLIGYGAGVVLGGDGRAGIGALELEHLADAPRFRLVETRRIGSDIMHRWLRD 325


>gi|312830146|emb|CBX34988.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus ECT-R 2]
          Length = 347

 Score =  302 bits (773), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 112/354 (31%), Positives = 166/354 (46%), Gaps = 14/354 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +FM  A++ +    G T  NP V  ++V +G ++G G     G  HAEVQAL+   + A 
Sbjct: 3   QFMDYAIQLANMVQGQTGVNPPVGAVVVNEGRIVGIGAHLRKGDKHAEVQALDMVQQNAE 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           GAT Y+TLEPCSH+G +PPC   II+C I +VV      D  +   G + L   GI V+ 
Sbjct: 63  GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDETLRAHGIEVEC 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + +         +   + ++   IT+K++ S D         S  IT    K  V+ LR 
Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA+L G  TV  DDP+ T R+      +P+++IL     +  + +I +     P+ I 
Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIY 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           TEN +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  +
Sbjct: 238 TENPN----LTSNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293

Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           D  ILY +  +IG  G         + E      F  V  +    +V L    K
Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347


>gi|311103895|ref|YP_003976748.1| riboflavin biosynthesis protein RibD [Achromobacter xylosoxidans
           A8]
 gi|310758584|gb|ADP14033.1| riboflavin biosynthesis protein RibD [Achromobacter xylosoxidans
           A8]
          Length = 383

 Score =  302 bits (773), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 111/365 (30%), Positives = 181/365 (49%), Gaps = 16/365 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           +P  + D  +M  AL  ++  +  T+ NP V C+IV+DG V+G G T   G PHAEV AL
Sbjct: 3   IPSDNDDIFWMRRALALAQTVMYSTAPNPRVGCVIVRDGRVLGEGATQPPGGPHAEVCAL 62

Query: 61  EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            +    GE   GAT YVTLEPCSH+GR+PPC   ++     RVVV + DP+  V+G+GL 
Sbjct: 63  RDVQARGESVEGATLYVTLEPCSHFGRTPPCVDAVLAARPARVVVAIGDPNPLVNGQGLA 122

Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
            L   GI +   +  +E       +++R       + LK+A S D    +    S  ITG
Sbjct: 123 RLRLAGIEVTTGVCGAEALAVNAGFISRMSRGLPWVWLKMAASLDGRSALHNGVSQWITG 182

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
             ++   H  RA++  +L G+GTVL DDP+L  R        P + ++D  F++  D+++
Sbjct: 183 PEARADGHRWRARACVVLTGMGTVLKDDPQLNVR-GVDTPRQPRKAVVDGRFEIPEDARL 241

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLL 291
                 A VII T  +D       + KN  ++          DL  ++  L       + 
Sbjct: 242 FDG---AEVIIFTAREDAAKTARLQAKNARVVLLPGEAAGRVDLPAMIRWLAQEQFNEVH 298

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG--IPSPLEEGYL-EKNFMCVRRDYFGS 348
           VE GA ++ + + +  VD ++LY + +++G+    +  P+ E     + +  +     G+
Sbjct: 299 VEAGAGLSGALVAAGCVDELLLYLAPVLLGDAAGMVRLPMLEHLDGARRYEFIETAPVGA 358

Query: 349 DVCLE 353
           D+ + 
Sbjct: 359 DLRVR 363


>gi|315657966|ref|ZP_07910840.1| riboflavin biosynthesis protein RibD [Staphylococcus lugdunensis
           M23590]
 gi|315497002|gb|EFU85323.1| riboflavin biosynthesis protein RibD [Staphylococcus lugdunensis
           M23590]
          Length = 383

 Score =  302 bits (773), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 112/353 (31%), Positives = 171/353 (48%), Gaps = 14/353 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           ++S A++ ++   G T  NP V  ++VK+G +IG G     G  HAEVQA++ AG+EA+G
Sbjct: 40  YLSKAIQLAKMVKGQTGVNPPVGAVVVKNGRIIGLGAHLKQGEKHAEVQAIDMAGDEAQG 99

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           AT YV+L+PC+HYG +PPC   II+ G+ +VV  V   D  +  +  + L+Q GI V + 
Sbjct: 100 ATIYVSLQPCTHYGSTPPCVNKIIDHGLDKVVYAV--KDTTLPSKSDEILTQAGIQVYQQ 157

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            + E       +   + EK   IT+K++ S D         S  IT    K  V+ LR  
Sbjct: 158 FDHEAYCLYEDFFKAKAEKIPEITVKVSTSIDGKQATDYGQSQWITNKTVKQDVYRLRHS 217

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DA+L G  TVLAD+P+ T R+       P+R+IL     +     +     L+ + I T
Sbjct: 218 HDAVLTGNKTVLADNPQYTTRV--KDGKHPIRVILSRSGDVDFSLDMFHD-QLSDIWIYT 274

Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
           E+      L     N+ I Y     +  +L  L  +GV  LLVE G  V   F+  +LV+
Sbjct: 275 EDATLTTTLP----NVFINYMSNCKIPDILQDLYKKGVGRLLVEAGPKVTSLFLQQQLVN 330

Query: 310 SIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
            +I+Y +  +IG  G         + +      F  V       ++ LE   K
Sbjct: 331 QLIIYFAPKLIGGSGTNQFFQTQEVIDLQDTFEFEIVNSTLLDQNIKLELRKK 383


>gi|289550476|ref|YP_003471380.1| Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Staphylococcus lugdunensis HKU09-01]
 gi|289180008|gb|ADC87253.1| Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Staphylococcus lugdunensis HKU09-01]
          Length = 368

 Score =  302 bits (773), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 112/353 (31%), Positives = 171/353 (48%), Gaps = 14/353 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           ++S A++ ++   G T  NP V  ++VK+G +IG G     G  HAEVQA++ AG+EA+G
Sbjct: 25  YLSKAIQLAKMVKGQTGVNPPVGAVVVKNGRIIGLGAHLKQGEKHAEVQAIDMAGDEAQG 84

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           AT YV+L+PC+HYG +PPC   II+ G+ +VV  V   D  +  +  + L+Q GI V + 
Sbjct: 85  ATIYVSLQPCTHYGSTPPCVNKIIDHGLDKVVYAV--KDTTLPSKSDEILTQAGIQVYQQ 142

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            + E       +   + EK   IT+K++ S D         S  IT    K  V+ LR  
Sbjct: 143 FDHEAYCLYEDFFKAKAEKIPEITVKVSTSIDGKQATDYGQSQWITNKTVKQDVYRLRHS 202

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DA+L G  TVLAD+P+ T R+       P+R+IL     +     +     L+ + I T
Sbjct: 203 HDAVLTGNKTVLADNPQYTTRV--KDGKHPIRVILSRSGDVDFSLDMFHD-QLSDIWIYT 259

Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
           E+      L     N+ I Y     +  +L  L  +GV  LLVE G  V   F+  +LV+
Sbjct: 260 EDATLTTTLP----NVFINYMSNCKIPDILQDLYKKGVGRLLVEAGPKVTSLFLQQQLVN 315

Query: 310 SIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
            +I+Y +  +IG  G         + +      F  V       ++ LE   K
Sbjct: 316 QLIIYFAPKLIGGSGTNQFFQTQEVIDLQDTFEFEIVNSTLLDQNIKLELRKK 368


>gi|222111713|ref|YP_002553977.1| riboflavin biosynthesis protein ribd [Acidovorax ebreus TPSY]
 gi|221731157|gb|ACM33977.1| riboflavin biosynthesis protein RibD [Acidovorax ebreus TPSY]
          Length = 370

 Score =  302 bits (773), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 117/356 (32%), Positives = 174/356 (48%), Gaps = 15/356 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA---GE 65
           F+S AL  +   + L++ NP V C+I  D G V+G+G T   G PHAEV AL +A   G 
Sbjct: 7   FISQALGLAAQALFLSNPNPRVGCVITSDAGAVLGQGFTQQAGGPHAEVMALRDAAARGN 66

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           + RGATAYVTLEPC+H GR+ PC   +I+ GI RVV  V DP+  V+G+G   L   G+ 
Sbjct: 67  DVRGATAYVTLEPCAHQGRTGPCCDALIQAGIARVVASVADPNPLVAGQGFARLRAAGVA 126

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +      +E +     + +R V     + +K A S D +  +    S  IT   ++   H
Sbjct: 127 VEAGPGAAETRELNIGFFSRMVRGMPWVRMKAAASLDGVTALGNGASQWITSPAARADGH 186

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             RA++ A+L GIGTVL DDP L  R        P  +I+D   +    +++   A    
Sbjct: 187 AWRARACAVLSGIGTVLEDDPLLNVREV-ATPRQPHLVIVDSRLQTPPGARLFDVADRQ- 244

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAH 300
           V+I     +   A A R +   ++         DL  +L  L  R V  L VE G  +  
Sbjct: 245 VLIYAAQGEAQAAEALRARGATVVVLPNARGKVDLPAMLRDLARRSVNELHVEAGHKLNG 304

Query: 301 SFINSRLVDSIILYRSQIVIGEG--GIPS--PLEEGYLEKNFMCVRRDYFGSDVCL 352
           SF+   LVD ++LY++ +++G G  G+ S  PL+                G D+ +
Sbjct: 305 SFLREGLVDEMLLYQAPLLLGSGAHGLASWGPLQALSDGVRMEFHSVRQIGPDLRV 360


>gi|218131999|ref|ZP_03460803.1| hypothetical protein BACEGG_03622 [Bacteroides eggerthii DSM 20697]
 gi|217985875|gb|EEC52215.1| hypothetical protein BACEGG_03622 [Bacteroides eggerthii DSM 20697]
          Length = 347

 Score =  301 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 110/348 (31%), Positives = 172/348 (49%), Gaps = 20/348 (5%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65
            ++M   ++ ++  +  T+ NP V  +IV DG +IG G     G  HAEV A+    E  
Sbjct: 4   EKYMRRCIQLAQNGLCNTAPNPMVGAVIVCDGKIIGEGYHIRCGEAHAEVNAIRSVKEPS 63

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
             + +T YV+LEPC+HYG++PPCA  IIE  I R+V+   DP  +V+GRG+Q L   G  
Sbjct: 64  LLKRSTIYVSLEPCAHYGKTPPCADLIIEKQIPRIVIGCQDPFAKVAGRGIQKLKDAGRE 123

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI--GMAGCGSVPITGFISKNQ 182
           ++  ++E + K  +  ++T     R +ITLK A S D  I         V ++  ++   
Sbjct: 124 VIVGVLEEDCKNLIRRFVTFHSLHRPYITLKWAESADKHIDKCRKDGKPVILSTPLTSML 183

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  RA+   I+VG  T   D+P LT R    Q  SP+RI++D   +LS    +   ++ 
Sbjct: 184 VHKRRAEHSTIMVGTHTAELDNPSLTVR--NWQGQSPVRIVIDRQQRLSPSLHLFDDSIR 241

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
              ++ T         AF      +I      L +++  L  +G+ SLLVEGG+ +  SF
Sbjct: 242 --TLVFTGQPHA----AFPNTEYIVIDFQQNILPQIMQHLYAQGLQSLLVEGGSYLLQSF 295

Query: 303 INSRLVDSIILYRSQ-IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           IN+ L D I +  S   +    G+ +P     +      V   YFG +
Sbjct: 296 INAELWDEIFVEESPLKLF--SGVKAPEIGNKIP----YVNEQYFGRN 337


>gi|189462016|ref|ZP_03010801.1| hypothetical protein BACCOP_02688 [Bacteroides coprocola DSM 17136]
 gi|189431230|gb|EDV00215.1| hypothetical protein BACCOP_02688 [Bacteroides coprocola DSM 17136]
          Length = 344

 Score =  301 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 111/345 (32%), Positives = 173/345 (50%), Gaps = 14/345 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D +++   ++ +R  +   + NP V  +IV +  +IG G     G  HAEV A+    +E
Sbjct: 4   DEKYIRRCIQLARNGMCNAAPNPMVGAVIVCNDRIIGEGYHVRCGEGHAEVNAIRSVKDE 63

Query: 67  --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
              + +T YV+LEPCSHYG++PPCA  II  GI RVVV   DP   VSGRG+Q L   GI
Sbjct: 64  SLLKKSTIYVSLEPCSHYGKTPPCADLIISKGIPRVVVGCVDPFSLVSGRGIQKLRDAGI 123

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI--GMAGCGSVPITGFISKN 181
            +   ++E+E +  +  ++T  ++KR +ITLK A S D  I         V ++  I+  
Sbjct: 124 EVTVGVLENECRALIKRFVTFNIQKRPYITLKWAESADGFIDVNRESGQPVILSTPITSM 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH  RA+  AILVG  T L D+P LT R       +P+R+++D    L L+ K+     
Sbjct: 184 YVHKQRAEHQAILVGRKTALLDNPSLTTR--NWYGKNPIRLVIDKELTLPLNLKLFD--G 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
             P  + T  +          K    +  +   L ++L IL    + SLLVEGG+ +  S
Sbjct: 240 KTPTWVFTALEKESTTNIIYYK----LDFNQNILPQILQILYENKLQSLLVEGGSQLLQS 295

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
           FI+  + D I +  S+ ++   G+  P+      K  +   ++  
Sbjct: 296 FIDEEIWDEIYIEYSEALL-HKGVKHPVVPAGYGKQVLSKDKNTI 339


>gi|89891631|ref|ZP_01203135.1| riboflavin biosynthesis protein RibD [Flavobacteria bacterium
           BBFL7]
 gi|89516178|gb|EAS18841.1| riboflavin biosynthesis protein RibD [Flavobacteria bacterium
           BBFL7]
          Length = 337

 Score =  301 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 112/366 (30%), Positives = 178/366 (48%), Gaps = 40/366 (10%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
           +++ D ++M   L+ ++  +G T  NP V  +IV  +  +IG G     G PHAEV A+ 
Sbjct: 1   MTTED-KYMQRCLQLAQNGLGTTYPNPLVGSVIVSENDEIIGEGWHLKSGEPHAEVNAVR 59

Query: 62  EA------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +A      G+    AT YV LEPCSH G++PPCA  I++ G ++VVV   DP  +V+G+G
Sbjct: 60  DAEKKGYDGDAFAKATIYVNLEPCSHTGKTPPCASMIVQKGFKKVVVGTLDPHDKVAGKG 119

Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC---GS 171
           +  + + GI +V  ++E E       + T    +R ++ LK A + D  I  A       
Sbjct: 120 ITIIEKAGIEVVVGILEKECNELNKRFFTFHRRQRPYVILKWAETSDGFIAPATKNEQQP 179

Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231
           V IT   S+   H LRA+ DAILVG  TV+ D+P LTCR       +P R+ILD    ++
Sbjct: 180 VWITNKYSRQLSHQLRAEEDAILVGAKTVIDDNPSLTCR--DWSGKNPTRVILDSRNSIT 237

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
            D +++  A  AP +                     +     +  ++L  L    V S++
Sbjct: 238 SDYQVMDDA--APTL--------------------KLQLSSSNTLEILNSLYQNNVQSVI 275

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           +EGG     SFI++ L D    +    V+   G+ +P+ +G    ++  + R    +DV 
Sbjct: 276 IEGGTTTIQSFIDTGLWDEAYQFMGTEVLFHEGLQAPVLKG----DYSMLYRKMIANDVL 331

Query: 352 LEYIGK 357
             Y  K
Sbjct: 332 KIYRKK 337


>gi|332885428|gb|EGK05677.1| riboflavin biosynthesis protein RibD [Dysgonomonas mossii DSM
           22836]
          Length = 348

 Score =  301 bits (772), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 111/338 (32%), Positives = 164/338 (48%), Gaps = 16/338 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D ++M   L+ +    G  S NP V  ++V +  +IG G     G  HAEV A+    
Sbjct: 2   TVDEKYMYRCLQLALNGKGFVSPNPMVGAVVVHNDKIIGEGFHREYGKAHAEVNAIASVK 61

Query: 65  EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           ++   + +T YV+LEPC+H G++PPCAQ II+  I  VV+   DP   VSGRG++ L   
Sbjct: 62  DKSLLKESTIYVSLEPCAHQGKTPPCAQLIIDNQIPHVVIACLDPYPAVSGRGIKMLQDA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG-----CGSVPITG 176
           GI +   ++E E       + T Q + R +I LK A +QD  I  A          PI+ 
Sbjct: 122 GIKVDVGILEREAWELNKEFFTIQTKGRPYIYLKWAQTQDGFIDKARDEKDIPQPTPISN 181

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
             SK  VH  RA   AI++G  T + D+P LT R       +P+R+ILD   ++ LD  I
Sbjct: 182 EFSKMLVHKKRAVVPAIMIGTNTAIKDNPSLTTR--HWYGKNPVRVILDRQGRIPLDYTI 239

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
                    I+ TE +         K     I  D   L+ + T L  R + S+LVEGG 
Sbjct: 240 FD--GKVETIVFTEKESSPK---LEKVTFIQIPFDENILENIFTTLKKRKIISVLVEGGQ 294

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
            +  S I+ RL D   +  S I     G+ +P+  G++
Sbjct: 295 ELLQSIIDKRLWDEAFIEISGITF-NNGVRAPIIAGHV 331


>gi|226226877|ref|YP_002760983.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Gemmatimonas aurantiaca T-27]
 gi|226090068|dbj|BAH38513.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Gemmatimonas aurantiaca T-27]
          Length = 384

 Score =  301 bits (772), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 124/361 (34%), Positives = 183/361 (50%), Gaps = 13/361 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           +  D RFM  A+  +    G  + NP V  ++V+DG V+G G     G PHAEV AL  A
Sbjct: 22  TVDDVRFMRRAIALAERGAGQVAPNPKVGAVLVRDGQVVGEGWHQQYGGPHAEVHALAAA 81

Query: 64  GEEARGATA----YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
              A  A      YV+LEPC+H+G++PPC + +I  G+ RVV    DP+ + +G G++ L
Sbjct: 82  HAVAANAARGATAYVSLEPCNHHGKTPPCTEALIAAGVARVVCATRDPNPKAAG-GIERL 140

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
              GI +   + E E  +    +        R  +TLK+AVS D  I  A      +TG 
Sbjct: 141 EAAGIRVTVGVCEHEALVQNAPFFHAARGTDRPFVTLKLAVSIDGAIVDASRQRGWLTGP 200

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            +   VH LRA +DA+ VGIGT LADDP LT RL      +P RI+ D   +L LDS ++
Sbjct: 201 AAHAAVHALRADADAVAVGIGTALADDPALTVRLVEAPRVAPRRIVFDRQGRLPLDSALV 260

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
           +TA   PV ++T    PV A A     + ++      L   L  L   GV  LLVEGGA 
Sbjct: 261 RTAGEIPVSVITHAPRPVAANALADAGVQVLEAAG--LADALRTLWAEGVRHLLVEGGAE 318

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLE 353
           +  + +++ LV  +I++++ +++G G + +    P            + R  FG D+   
Sbjct: 319 LGSALLHAGLVHHLIIFQAPVILGAGAVSAFATFPAAVADTAPRLRVLERRVFGDDLMTR 378

Query: 354 Y 354
           Y
Sbjct: 379 Y 379


>gi|329733229|gb|EGG69566.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 347

 Score =  301 bits (772), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 113/354 (31%), Positives = 169/354 (47%), Gaps = 14/354 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +FM  A++ +    G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A 
Sbjct: 3   QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           GAT Y+TLEPCSH+G +PPC   II+C I +VV      D  +   G + L  +GI V+ 
Sbjct: 63  GATIYITLEPCSHFGSTPPCVNKIIDCKITKVVYAT--KDNSLDTHGDETLRAQGIEVEC 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + +         +   + ++   IT+K++ S D         S  IT    K  V+ LR 
Sbjct: 121 VDDERALQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA+L G  TV  DDP+ T R+      +P+++IL     +  + +I +     P+ I 
Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIY 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           TEN +    L   + +I IIY    +L  +L  L  RGV +LLVE G      F+ S  +
Sbjct: 238 TENPN----LTTNQTHIEIIYLKSCELTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293

Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           D  ILY +  +IG  G         + E      F  V  +    +V L    K
Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347


>gi|312877999|ref|ZP_07737939.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795234|gb|EFR11623.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 371

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 105/344 (30%), Positives = 167/344 (48%), Gaps = 12/344 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GE 65
            +M+ AL  ++    L   NP V C+IVK+G +IG+G     G  HAEV A+E+A   G 
Sbjct: 8   YYMNMALDLAKKASPLVLPNPRVGCVIVKNGTIIGKGYHQKYGEKHAEVLAIEDAIKNGY 67

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
             + AT YV+LEPC H+G+ PPC + II+ GI++VVV   DP+  V+G G+Q L Q GI 
Sbjct: 68  LLKNATMYVSLEPCCHFGKQPPCTEAIIKSGIKKVVVATRDPNPLVNGNGIQILKQHGIE 127

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V+ +++ E +     +     +   +  +K+A S D  I          +       VH
Sbjct: 128 VVEGVLQKEAESINKDFFKYIKKGIPYTAIKVAQSIDGKIAKPSNKRFLFSTEEENVFVH 187

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR +  A LV + TV++D+P L  R   +    P+R++LD   ++ L+  I+KT+    
Sbjct: 188 SLRQKYMATLVSVNTVISDNPILNARYGEI-VRQPIRVVLDTKLRIPLECNIVKTSDEYS 246

Query: 245 VIIVTEN--DDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAA 297
             IV     +D        +K I II+         DL    + L  + + S+LVEGG+ 
Sbjct: 247 TYIVCSENVNDTQKIDLLSQKGIKIIFAKSSEDGHLDLSDAFSKLAQQKIVSVLVEGGSL 306

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341
           +  S +  R+ D        + IG       +     E+ F  +
Sbjct: 307 LNFSLLKQRIADYWYSLIFNVFIGGQHTKGAVGGEGFEEFFPKL 350


>gi|239816083|ref|YP_002944993.1| riboflavin biosynthesis protein RibD [Variovorax paradoxus S110]
 gi|239802660|gb|ACS19727.1| riboflavin biosynthesis protein RibD [Variovorax paradoxus S110]
          Length = 375

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 119/359 (33%), Positives = 170/359 (47%), Gaps = 19/359 (5%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GE 65
           FM+ AL  +R     T  NP V C++V  +G VIG+G T   G PHAEV AL +A   G 
Sbjct: 10  FMAQALDLARQAGPETDPNPRVGCVLVDANGAVIGQGRTQQVGGPHAEVMALRDAAARGH 69

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
              GATA+VTLEPC+H+GR+ PC   +   GI RVV  + DP+  V+G+G + L   G+ 
Sbjct: 70  SVAGATAFVTLEPCAHHGRTGPCCDALAAAGIGRVVASLADPNPLVAGKGFERLRAAGVA 129

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +       E +     + +R V K   + LK A S D   G+    S  IT   ++   H
Sbjct: 130 VEVGPGAEEARELNIGFFSRMVRKTPWVRLKAAASLDGKTGLRNGVSQWITSEPARADGH 189

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             RA++ A+L G+GTVL DDP L  RL       P  +I+D   +    ++I       P
Sbjct: 190 AWRARASAVLTGVGTVLEDDPRLDVRLVETT-RQPHVVIVDSQLQTPPGARIFMAGR--P 246

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAH 300
           V I     D   A A + +   I Y        DL  +L  L  R V  L VE G  +  
Sbjct: 247 VWIYAAAQDEAKAAALQARGATIAYLPNAQGKVDLAAMLRDLARREVNELHVESGHKLNG 306

Query: 301 SFINSRLVDSIILYRSQIVIGEG-----GIPS--PLEEGYLEKNFMCVRRDYFGSDVCL 352
           S +   LVD +++Y +  +IG+G     GI +  PL +            +  G D+ +
Sbjct: 307 SLLREGLVDELLVYLAPKLIGDGLDMASGIHTGGPLADLAGALPLEFRTIERIGPDLRI 365


>gi|218296564|ref|ZP_03497292.1| riboflavin biosynthesis protein RibD [Thermus aquaticus Y51MC23]
 gi|218243106|gb|EED09638.1| riboflavin biosynthesis protein RibD [Thermus aquaticus Y51MC23]
          Length = 377

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 106/372 (28%), Positives = 172/372 (46%), Gaps = 21/372 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   D RF+  AL+ +    G T  NP V  ++V+DG ++G G     G PHAE  ALE 
Sbjct: 1   MRDLDERFLRRALQIAERARGHTHPNPLVGAVVVRDGEIVGEGYHPRAGAPHAEALALEA 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGAT YV+LEPC H+GR+PPC+  +I  G+ RVV+   DP+    G   + L+  
Sbjct: 61  AGERARGATVYVSLEPCDHHGRTPPCSLALIRAGVARVVLAARDPNPLAQGGMARLLAAG 120

Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
             +   ++E E +    A+ T     R  + LK A++ D  +      +  ++   S+  
Sbjct: 121 VAVEAGLLEEEAQDQNEAFFTALRRGRPFVLLKAALTLDGRVATRLGDARYVSSEASRRV 180

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFKLSL 232
            H  R    A++VG+GTVL DDP LT R    +             P++++LD   +   
Sbjct: 181 AHAYRQWLPAVMVGVGTVLQDDPALTVREPDFRPFPLMLEPPPLRDPLKVVLDTEARTPP 240

Query: 233 DSKIIKTALLAP----VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVG 284
            +++ +          +I+  E        A       +            ++ L +L  
Sbjct: 241 TARLFRPGPRGERARVLILAGEGAPKERLKALEAAGARVEELPREGGRVSPERALALLRA 300

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI---PSPLEEGYLEKNFMCV 341
            G+  +L+EGG  +A +F+   LVD + L+ +  ++GEG        +E           
Sbjct: 301 EGIDGVLLEGGPGLAGAFLARGLVDKLALFLAPKLLGEGRGLLEGFGVERMAEALRLRLH 360

Query: 342 RRDYFGSDVCLE 353
           RR++ G D+ LE
Sbjct: 361 RREWLGDDLWLE 372


>gi|298695036|gb|ADI98258.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 343

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 113/352 (32%), Positives = 165/352 (46%), Gaps = 14/352 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A++ +    G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A GA
Sbjct: 1   MDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAEGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           T Y+TLEPCSH+G +PPC   II+C I +VV      D  +   G   L   GI V+ + 
Sbjct: 61  TIYITLEPCSHFGLTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDDTLRDHGIEVECVD 118

Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
           +         +   + ++   IT+K++ S D         S  IT    K  V+ LR + 
Sbjct: 119 DERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRH 178

Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
           DA+L G  TV  DDP+ T R+      +P+++IL     +  + +I +     P+ I TE
Sbjct: 179 DAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIYTE 235

Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
           N +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  +D 
Sbjct: 236 NPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDE 291

Query: 311 IILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
            ILY +  +IG  G         + E      F  V  +    +V L    K
Sbjct: 292 FILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 343


>gi|91788744|ref|YP_549696.1| 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidine
           deaminase [Polaromonas sp. JS666]
 gi|91697969|gb|ABE44798.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Polaromonas sp.
           JS666]
          Length = 373

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 109/360 (30%), Positives = 170/360 (47%), Gaps = 20/360 (5%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
           F+  AL  +R  VG +  NP V C+I    D  V+G G T   G  HAE+ AL +A    
Sbjct: 7   FIDQALELARHAVGRSEPNPRVGCVIASADDQRVLGTGDTQAVGGAHAEIMALRDAAARR 66

Query: 67  --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
               GATAYVTLEPCSH+GR+ PC   +I  GI++VV  + DP+  VSG+G + +   GI
Sbjct: 67  HVVAGATAYVTLEPCSHHGRTGPCCDALIAAGIKKVVASIADPNPLVSGQGFERMRAAGI 126

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +V     +E +     + +R + K   + +KIA S D    +    S  IT   ++   
Sbjct: 127 EVVVGPGAAESRELNIGFFSRMIRKTPWVRMKIAASLDGKTALDNGASQWITSEAARTDG 186

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  RA++ AIL GIGT+L D+P L  R +      P  +++D   +L L++ +       
Sbjct: 187 HAWRARASAILTGIGTILEDNPRLDVR-SVATPRQPHLVVVDSRLQLPLNANLFTGNR-- 243

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR--------DLKKLLTILVGRGVTSLLVEGG 295
            + +     D     A  ++ + +IY   R        DL  +L  L  R V  + VE G
Sbjct: 244 TIYVYAAVPDDAKKTALEERGVTVIYLPGRQTGAPDKVDLTAMLRDLAQREVNEVHVEAG 303

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCL 352
             +  S +   LVD  ++Y +  ++G G   +   PL++         +     G D+ +
Sbjct: 304 HKLNGSLLREELVDEFLVYLAPKLLGSGNGMASFGPLQQLSDAVPLEFLSAQPVGVDLRV 363


>gi|242374059|ref|ZP_04819633.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Staphylococcus epidermidis M23864:W1]
 gi|242348184|gb|EES39786.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Staphylococcus epidermidis M23864:W1]
          Length = 347

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 107/354 (30%), Positives = 174/354 (49%), Gaps = 14/354 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           RFM+ A++ ++   G T  NP V  ++VKDG ++G G     G  HAEVQAL+ AG+ A+
Sbjct: 3   RFMNYAIQLAQMVDGQTGINPPVGSVVVKDGRIVGLGAHLKKGDKHAEVQALDMAGQAAK 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
            AT YV+LEPC+H+G +PPC   IIE GI++V+  +   D  +  +G + L + GI V+ 
Sbjct: 63  DATIYVSLEPCTHHGSTPPCVDKIIEFGIKKVIYAI--KDTTLVSKGDEILKEAGIEVEF 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
               +       +   + +    +T+K++ S D         S  IT    K  V+ LR 
Sbjct: 121 QFNEDAAELYKDFFPAKRKGIPELTVKVSSSLDGKQATDLDESKWITNKEVKEDVYRLRH 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA++ G  T+ ADDP  T R+      +P+R+IL     ++ + ++ K    + + I 
Sbjct: 181 EHDAVVTGRKTIEADDPLYTTRVP--DGKNPIRVILSKTGDINFEHQLFKDT-TSQIWIY 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           TEN+     L    K+I II     +  ++L  L  RG+  LLVE G  +   F+ S  +
Sbjct: 238 TENE----KLKNNDKHIEIINMQECETTEILKDLYRRGIGKLLVEAGPNITSQFLQSDHL 293

Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGK 357
           + +ILY +  +IG  G     +   +        F  V       ++ L+   K
Sbjct: 294 NELILYLAPKLIGGSGKHQFFKTDEVIDLPEATQFEIVYSKLINQNIKLKLRKK 347


>gi|302786796|ref|XP_002975169.1| hypothetical protein SELMODRAFT_102410 [Selaginella moellendorffii]
 gi|300157328|gb|EFJ23954.1| hypothetical protein SELMODRAFT_102410 [Selaginella moellendorffii]
          Length = 563

 Score =  301 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 91/366 (24%), Positives = 164/366 (44%), Gaps = 17/366 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           FD+  M  A   +    G T+ +P+ AC+I +   V+G       G   AE+QA+E AGE
Sbjct: 8   FDSFHMLRAAELADGSAGHTAPHPNSACVIARSEKVVGEAFLYGQGTRCAEIQAVEMAGE 67

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            +RGATAY+ LEP   +G      + + + G+ RVVV +  P    SG+ +  L   GI 
Sbjct: 68  LSRGATAYLNLEPGDCHGDDTAI-KALKQSGVARVVVGLQHPLKHHSGKAIAALRGLGIP 126

Query: 126 VDRMMES----------EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
           VD + +             +      L R   +     LK A++ D  I  +   +  ++
Sbjct: 127 VDVLEKHGDGTFKEAFRACQEVNAPLLYRATHEVPFSILKYAMTLDGKIAASTGHASWVS 186

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
             +S+ +V   R +SDAI+VG  TV  D+P LT R  G   H P+R+++     L L+  
Sbjct: 187 SKMSRQRVFETRGRSDAIIVGGNTVRRDNPRLTTRREG--GHLPVRVVMSRTLNLPLELH 244

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
           +   +    +++               + + ++  D    K ++     RG  ++L E G
Sbjct: 245 LWDVSNAHTIVMTQRGARREFQRELVTRGVEVVEFDFLTPKAVMDYCYERGFLTVLWECG 304

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
            A++   + + ++  +I + +  +IG    P+P+ E  + +    +       DV  E +
Sbjct: 305 GALSAPALAAGIIHKVIAFVAPKIIGGVTAPTPVGELGMVEMTQALNLL----DVTFEQV 360

Query: 356 GKNLCL 361
           G ++ +
Sbjct: 361 GPDMLV 366


>gi|116493546|ref|YP_805281.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Pediococcus pentosaceus ATCC 25745]
 gi|116103696|gb|ABJ68839.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pediococcus
           pentosaceus ATCC 25745]
          Length = 353

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 118/362 (32%), Positives = 182/362 (50%), Gaps = 21/362 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S  D  +M+ A   +      T TNP V  +IVK+ +V+ +G     G  HAE+ AL+ 
Sbjct: 4   ISEQD--YMNLAFEMAEKGKYQTWTNPLVGAVIVKNNVVLAKGYHHQFGAAHAEIDALQH 61

Query: 63  AGE--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             +  +ARGAT YV+LEPCSH+G++PPCA+ + E GI+ VVV   DP+  V+GRGLQ L 
Sbjct: 62  LDDLKQARGATMYVSLEPCSHFGKTPPCAKKLAEVGIKAVVVGQKDPNPLVAGRGLQILR 121

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
             GI +  +   +       Y      +R ++ +K A++ D  I         ITG  + 
Sbjct: 122 DAGIEIKVLN--QTGGLNVKYNFFYQHQRPYVNVKYAMTLDGKINQQANQRSIITGKEAY 179

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDP---HFKLSLDSKII 237
                LRA+  AILVG  T+  D P+LT R   + +  P R++L       K+  D    
Sbjct: 180 QDSQQLRAEYQAILVGENTLKVDHPQLTVRQIAVYQ-QPWRMVLIRDVDQLKV-EDYAFF 237

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
           KTA   P++++T +    +       N+ +I  D     K+LT+L  RG+ S+LVEGG+ 
Sbjct: 238 KTAD--PILLLTSS----VTRRQWPNNVEVIS-DRWTPNKILTLLAKRGIQSVLVEGGSQ 290

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           +   F+ S LVD I +Y +  + G  G+P+   P +  Y    +  V +   G D+    
Sbjct: 291 IHAEFLASGLVDEINVYLAPRIYGATGLPAIFNPTQLPYQSNAYQLVEKMELGPDMKFRL 350

Query: 355 IG 356
             
Sbjct: 351 RR 352


>gi|120612202|ref|YP_971880.1| riboflavin biosynthesis protein RibD [Acidovorax citrulli AAC00-1]
 gi|120590666|gb|ABM34106.1| riboflavin biosynthesis protein RibD [Acidovorax citrulli AAC00-1]
          Length = 377

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 116/369 (31%), Positives = 172/369 (46%), Gaps = 18/369 (4%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCPHAEVQAL 60
           P S  D   M  AL+ +   +  TS NP V C++V  G  +IG+G T   G PHAEV AL
Sbjct: 7   PASPADL--MQLALQLAEDGLYRTSPNPRVGCVLVNAGQQIIGQGSTQRAGGPHAEVMAL 64

Query: 61  EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            +A   G    GATAYVTLEPCSH+GR+ PC   ++E GI RVV  + DP+  V+G+G +
Sbjct: 65  RDARARGHATHGATAYVTLEPCSHHGRTGPCCDALVEAGIARVVASLADPNPLVAGQGFE 124

Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
            L   G+ +      +  +     + +R       + +K A S D    +    S  IT 
Sbjct: 125 RLRGAGVQVEVGPGAAASRELNIGFFSRMQRGLPWVRMKAATSLDGFTALPDGTSQWITS 184

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
             ++   H  RA++ A+L GIGT+LADDP L  R        P   I+D H +    ++ 
Sbjct: 185 PEARADGHAWRARACAVLTGIGTILADDPRLDVREAE-TPRQPHLAIIDSHLQTPPGARF 243

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILV-GRGVTSL 290
            +      ++I T + D   A   + +   +I          DL  +L  L   R V  L
Sbjct: 244 FEVPQRQ-ILIYTASADSAKAAVLQDRGAQVIAAPMAGDGHIDLHWVLQDLARQRSVNEL 302

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFG 347
            VE GA +  + + +RLVD I+LY +  ++G G   +   P               D  G
Sbjct: 303 HVEAGARLNGALVRARLVDEILLYMAPTLLGAGRGMAQWGPPGTLAGAHAMAWQDIDRVG 362

Query: 348 SDVCLEYIG 356
           +D+ +   G
Sbjct: 363 ADLRIIARG 371


>gi|94970364|ref|YP_592412.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Candidatus Koribacter versatilis Ellin345]
 gi|94552414|gb|ABF42338.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 399

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 123/384 (32%), Positives = 188/384 (48%), Gaps = 30/384 (7%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62
           +S D RF   AL  +   + + S NP V  ++V  DG VIG G   Y G  HAEV ALE+
Sbjct: 13  ASPDERFTLRALELASKGIAMASPNPRVGAVVVNADGEVIGEGFHMYDGLKHAEVLALEQ 72

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  ARGAT Y+ LEPCSH GR+ PCA  +I  GI+RVV  + DP+  V+GRG   L + 
Sbjct: 73  AGNAARGATLYLNLEPCSHEGRTGPCADAVIAAGIKRVVCSMPDPNPLVAGRGFAKLREA 132

Query: 123 GII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV--------P 173
           G+  +  +     +     +  R       +TLK A++ D  I                 
Sbjct: 133 GVELLVGVFADYARKLNEGFSKRIRTGLPLVTLKAAMTLDGKIAPPPAEVTDIGFSQPGW 192

Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233
           IT  I++  V  LR  +D+I++G+GTV++D+P LT R    +    +R++LD   +L LD
Sbjct: 193 ITSEIARAHVQELRHAADSIMIGVGTVVSDNPLLTDRTGLPRRRPLLRVVLDSQLRLPLD 252

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD--------------CRDLKKLL 279
           S+++KTA    V++     +     A  ++ I +                    DL  ++
Sbjct: 253 SRLVKTAH-HDVLVFCSFAEEKKRAALEERGIQVEQVPLAKNEPGGVAVAGGRPDLNAVV 311

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKN- 337
             L  R + SL+VEGGAAV  + + + +VD + LY +  ++G G  +P  L  GY   + 
Sbjct: 312 ERLGARELNSLIVEGGAAVNWAALAAGIVDKVFLYYAPKILGGGNAVPFALGPGYARMDE 371

Query: 338 ---FMCVRRDYFGSDVCLEYIGKN 358
                 +    FG D  +E   ++
Sbjct: 372 AAYLRNLELHRFGEDFAVEGYLRD 395


>gi|253735372|ref|ZP_04869537.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|269203407|ref|YP_003282676.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus ED98]
 gi|253726661|gb|EES95390.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|262075697|gb|ACY11670.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus ED98]
          Length = 343

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 112/352 (31%), Positives = 165/352 (46%), Gaps = 14/352 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A++ +    G T  NP V  ++V +G ++G G     G  HAEVQAL+ A + A GA
Sbjct: 1   MDYAIQLANMVQGQTGVNPPVGAVVVNEGRIVGIGAHLRKGDKHAEVQALDMAQQNAEGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           T Y+TLEPCSH+G +PPC   II+C I +VV      D  +   G + L   GI V+ + 
Sbjct: 61  TIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDETLRAHGIEVECVD 118

Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
           +         +   + ++   IT+K++ S D         S  IT    K  V+ LR + 
Sbjct: 119 DERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRH 178

Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
           DA+L G  TV  DDP+ T R+      +P+++IL     +  + +I +     P+ I TE
Sbjct: 179 DAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIYTE 235

Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
           N +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  +D 
Sbjct: 236 NPN----LTSNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDE 291

Query: 311 IILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
            ILY +  +IG  G         + E      F  V  +    +V L    K
Sbjct: 292 FILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 343


>gi|224536352|ref|ZP_03676891.1| hypothetical protein BACCELL_01226 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522049|gb|EEF91154.1| hypothetical protein BACCELL_01226 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 348

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 107/329 (32%), Positives = 170/329 (51%), Gaps = 20/329 (6%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65
            ++M   ++ ++  +   + NP V  +IV DG +IG G     G  HAEV A+    E  
Sbjct: 7   EKYMRRCIQLAQNGLCNAAPNPMVGAVIVCDGKIIGEGYHVRCGKAHAEVNAIRSVKETS 66

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
             + +T YV+LEPCSH+G++PPCA  IIE  I R+V+   DP  +V+GRG+Q L   G  
Sbjct: 67  LLKRSTIYVSLEPCSHHGKTPPCADLIIEKQIPRIVIGCQDPFSKVAGRGIQKLKDAGRE 126

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI--GMAGCGSVPITGFISKNQ 182
           ++  ++E E +  +  ++T     R +ITLK A S D  I         V ++  ++   
Sbjct: 127 VIVGVLEDECRHLIKRFITFHTLHRPYITLKWAESADGFIDLCRTEGNPVILSTPLTSML 186

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  RA+  AILVG  T   D+P L  R       SP+R+++D    LS    +   ++L
Sbjct: 187 VHKKRAEHSAILVGTRTAKLDNPSLNVR--NWYGRSPIRLVIDRKQSLSPTLHLFDGSVL 244

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAH 300
              ++ TE+    L       N+  +  D +   L +++ IL  RG+ SLLVEGG+ +  
Sbjct: 245 --TLVFTEHFHDALP------NVEYLPIDFQQDILPQIMQILYERGIQSLLVEGGSTLLQ 296

Query: 301 SFINSRLVDSIILYRSQI-VIGEGGIPSP 328
           SFI++ L D + +  S   +I   G+ +P
Sbjct: 297 SFIDAGLWDEVYVEESPRSLI--SGVKAP 323


>gi|271964337|ref|YP_003338533.1| diaminohydroxyphosphoribosylaminopyrimidinedeami nase
           [Streptosporangium roseum DSM 43021]
 gi|270507512|gb|ACZ85790.1| Diaminohydroxyphosphoribosylaminopyrimidinedeami nase
           [Streptosporangium roseum DSM 43021]
          Length = 388

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 113/341 (33%), Positives = 158/341 (46%), Gaps = 27/341 (7%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D   M  A+  +    G TS NP V C+++   G V+G G  AY G PHAEV AL  AGE
Sbjct: 3   DQAHMRRAIELAARGRGTTSPNPVVGCVVLDAAGQVVGEGFHAYAGGPHAEVVALRAAGE 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            ARG TAYVTLEPC H GR+ PCA  ++E GI RVVV V DP+   +G   +       +
Sbjct: 63  RARGGTAYVTLEPCDHTGRTGPCALALLEAGIARVVVAVRDPNPAAAGGADRLTRHGVAV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++  E       +LT     R H+T K A + D     A   S  IT   S+  VH 
Sbjct: 123 TTGVLAEEAGRGNAEWLTSVRLGRPHVTWKYAATLDGRSAAADGTSQWITSPESRADVHR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE--------------------------HSP 219
           LR ++DAI+ GIGTVLADD  LT R                                  P
Sbjct: 183 LRGEADAIIAGIGTVLADDARLTVRRPAADGAPAGVDSGLPDGAATARPLAQGAPATRPP 242

Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279
           +R+++D   +  L ++++       V +  + D   LA       +        DL  LL
Sbjct: 243 LRVVVDSDARTPLTARVLDGRAPTLVAVADDADADALAAGAEVVRLARRRPYGLDLAGLL 302

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
             L  R +  +L+EGG  +A SF+   L+D ++ Y +  ++
Sbjct: 303 AELHRRQIVGVLLEGGPTLAGSFLKEGLIDRVVGYLAPALL 343


>gi|332878860|ref|ZP_08446575.1| riboflavin biosynthesis protein RibD [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332683211|gb|EGJ56093.1| riboflavin biosynthesis protein RibD [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 350

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 110/328 (33%), Positives = 169/328 (51%), Gaps = 11/328 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D +++   ++ ++  +G T  NP V  +IV +  VIG G     G  HAEV+A+    ++
Sbjct: 3   DQQYIHRCIQLAQNGLGTTYPNPVVGSVIVYNDRVIGEGWHVRAGEAHAEVRAIASVKDK 62

Query: 67  --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                +T YV+LEPCSHYG++PPCA  II   I RVV+   DP  +V+GRG+Q L + G 
Sbjct: 63  QLLSESTLYVSLEPCSHYGKTPPCADLIIAHRIPRVVIGCTDPFAKVAGRGIQKLREAGC 122

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG---SVPITGFISK 180
            +V  + + E +     + T   +KR +I LK A ++D +I            ITG  ++
Sbjct: 123 EVVVGVCQEECEALNKRFFTFHQKKRPYIFLKWAETRDGLIAPLHKQEIAPQWITGAYAR 182

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             VHLLR+   AILVG GTV AD+P L+ R       SP+R+I+DP      D  +    
Sbjct: 183 QYVHLLRSTEAAILVGAGTVWADNPSLSTR--SWYGKSPLRVIIDPRLSTRKDFNVWNDE 240

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
           +  P + + + D   +    ++  +  I      L +L  +L  R V SL+VEGGA    
Sbjct: 241 V--PTLFIADRDYKGVRHFGQRTEVACIDFGGEVLPQLCKVLYEREVQSLIVEGGAHTLQ 298

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSP 328
            FI + L D  +++R   V    G+ +P
Sbjct: 299 QFIKADLWDEALVFRGDTVF-TNGLKAP 325


>gi|255009912|ref|ZP_05282038.1| putative riboflavin biosynthesis protein [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Bacteroides fragilis 3_1_12]
 gi|313147700|ref|ZP_07809893.1| riboflavin biosynthesis protein ribD [Bacteroides fragilis 3_1_12]
 gi|313136467|gb|EFR53827.1| riboflavin biosynthesis protein ribD [Bacteroides fragilis 3_1_12]
          Length = 346

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 119/354 (33%), Positives = 179/354 (50%), Gaps = 22/354 (6%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65
            ++M   ++ +R  +   S NP V  +IV D  +IG G     G  HAEV A+    +  
Sbjct: 4   EKYMRRCIQLARNGLCNVSPNPMVGAVIVCDEQIIGEGYHVRCGEAHAEVNAIRSVKDPS 63

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
             + +T YV+LEPCSH+G++PPCA  IIE  I ++V+   DP  +V+G+G+Q L   G  
Sbjct: 64  LLKRSTIYVSLEPCSHHGKTPPCADLIIEKQIPKIVIGCQDPFSKVAGKGIQKLRNAGRE 123

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG--CGSVPITGFISKNQ 182
           ++  ++E E +  +  ++T     R +I LK A S D  I +       V ++  ++   
Sbjct: 124 VIVGVLEKECRELIQKFITFHTLHRPYIVLKWAESADGFIDLERTEGHPVLLSTPLTSML 183

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  RA+SDAI+VG  T L DDP LT R      H+P+RI LD +  L   S ++  +  
Sbjct: 184 VHKKRAESDAIMVGTRTALLDDPALTVR--HWYGHNPVRIALDRNHSLPQTSHLLDGS-- 239

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
            P +I TE   P       KKN+  I  D     L ++L  L  R + SL+VEGG  +  
Sbjct: 240 VPTLIFTECHRP------GKKNLEYIPLDYQTDILPQILATLYQRNLQSLMVEGGKILLE 293

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDV 350
           SFI S + D II+ RS   +   G+ +P     +    EK+F    R Y   + 
Sbjct: 294 SFICSGIWDEIIIERSDKRL-YSGVKAPEISDKISYSEEKHFATTFRHYLKRNT 346


>gi|312134474|ref|YP_004001812.1| riboflavin biosynthesis protein ribd [Caldicellulosiruptor
           owensensis OL]
 gi|311774525|gb|ADQ04012.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor
           owensensis OL]
          Length = 371

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 108/344 (31%), Positives = 170/344 (49%), Gaps = 12/344 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GE 65
            +M+ AL  ++    L   NP V C+IVK+G +IG+G     G  HAEV A+E+A   G 
Sbjct: 8   YYMNMALELAKKASYLVLPNPRVGCVIVKNGTIIGKGYHQKYGEKHAEVLAIEDAIKNGY 67

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
             + AT YV+LEPCSH+G+ PPC + II+ GI++VVV   DP+  V+G+G+Q L Q GI 
Sbjct: 68  SLKNATMYVSLEPCSHFGKQPPCTEAIIKSGIKKVVVATRDPNPIVNGKGIQILKQHGIE 127

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V+ +++ E +I    +         +I +K+A S D  I                  VH
Sbjct: 128 VVEGVLQKEAEIVNKEFFKYMKTGIPYIAIKVAQSIDGKIATPSNKRFLFNTDDENVFVH 187

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR +  A LV + TV++D+P L  R  G     P+R++LD   ++ L+  I+KT+    
Sbjct: 188 SLRQKYMATLVSVNTVISDNPILNARY-GQIVRQPIRVVLDTKLRIPLECNIVKTSDEYS 246

Query: 245 VIIVTEN--DDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAA 297
             IV     +D        ++ I IIY         +L    + L  + + S+LVEGG+ 
Sbjct: 247 TYIVCSENVNDTQKIDLLSQRGIKIIYAKSSEDGHLELSDAFSKLAQQKIISVLVEGGSM 306

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341
           +  S +  R+ D        + IG       + +   E+ F  +
Sbjct: 307 LNFSLLKKRIADYWYSLIFNVFIGGENTKGVVGKEGFEEFFPKL 350


>gi|302533295|ref|ZP_07285637.1| riboflavin biosynthesis protein RibD [Streptomyces sp. C]
 gi|302442190|gb|EFL14006.1| riboflavin biosynthesis protein RibD [Streptomyces sp. C]
          Length = 376

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 122/307 (39%), Positives = 161/307 (52%), Gaps = 6/307 (1%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  A+  +   +G TS NP V C+I    G V+G G     G PHAEV AL  AGE ARG
Sbjct: 23  MRRAIELASRGLGSTSPNPVVGCVITDPAGAVVGEGWHERAGGPHAEVHALRAAGEAARG 82

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
            TAYVTLEPC+H GR+ PCAQ +++ GI RVV  V DP+ + SG G   L   GI  +  
Sbjct: 83  GTAYVTLEPCNHTGRTGPCAQALVDAGIARVVYAVSDPNPQASGGGAT-LRAAGIDTEAG 141

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++  E +    A+LT     R H+T K A + D         S  IT   S+  VH LRA
Sbjct: 142 LLADEAEQGNTAWLTSVRLGRPHVTWKYAATLDGRSAAEDGSSRWITSPESRADVHRLRA 201

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           ++DA+LVG GT+ ADDP L  R        P+R+ LD    L   ++I+  A  AP +IV
Sbjct: 202 EADAVLVGGGTLRADDPHLAVRGVDGAV-QPLRVALDTRAGLPATARILDDA--APTLIV 258

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           T  D     L         +      L  LL  L GRGV S+L+EGG  +A +F+ +  V
Sbjct: 259 TGEDADTAHLPGTDVLRLPLRDGRLPLGPLLAELYGRGVRSVLLEGGPTLAGAFLEAGAV 318

Query: 309 DSIILYR 315
           D ++ Y 
Sbjct: 319 DRVVGYI 325


>gi|82751356|ref|YP_417097.1| riboflavin specific deaminase [Staphylococcus aureus RF122]
 gi|82656887|emb|CAI81317.1| riboflavin specific deaminase [Staphylococcus aureus RF122]
          Length = 347

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 112/354 (31%), Positives = 165/354 (46%), Gaps = 14/354 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +FM  A++ +    G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A 
Sbjct: 3   QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           GAT Y+TLEPCSH+G +PPC   II+C I +VV      D  +   G   L   GI V+ 
Sbjct: 63  GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDDTLRDHGIEVEC 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + +         +   + ++   IT+K++ S D         S  IT    K  V+ LR 
Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA+L G  TV  DDP+ T  +      +P+++IL     +  + +I +     P+ I 
Sbjct: 181 RHDAVLTGRRTVELDDPQYTTLIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIY 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           TEN +    L   + +I II     DL  +L  L  RGV +LLVE G      F+ S  +
Sbjct: 238 TENPN----LTTNQTHIEIICLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293

Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           D  ILY +  +IG  G         + E      F  V  +    +V L    K
Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347


>gi|319401074|gb|EFV89293.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
           FRI909]
          Length = 347

 Score =  299 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 111/354 (31%), Positives = 170/354 (48%), Gaps = 14/354 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           RFM  A++ ++   G T  NP V  ++VK+G ++G G     G  HAEVQA+E AG  A+
Sbjct: 3   RFMDDAIQLAQMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLNAQ 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           GAT YV+LEPC+H+G +PPC   IIE GI +V+  V   D  +  +G + L + GI V+ 
Sbjct: 63  GATIYVSLEPCTHHGSTPPCVDKIIEAGISKVIYAV--KDTTLVSKGDEILREAGIEVEF 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
                       + T +  +   +T+K++ S D         S  IT    K  V+ LR 
Sbjct: 121 QYNENAATLYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLRH 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA++ G  T+ AD+P  T R+       P+R+IL    +L  + +I K    + + I 
Sbjct: 181 EHDAVITGRRTIEADNPLYTTRVP--DGKHPIRVILSKTGQLDFNQQIFKDT-ASEIWIY 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           TEN+     L   K  I II     D   +L  L  RG+  LLVE G  +   F+ S+ +
Sbjct: 238 TENE----KLKTDKSFIKIINISNCDTATILQDLYQRGIGKLLVEAGPNITSQFLQSKHL 293

Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           + +ILY +  +IG  G         + +      F  V       ++ L+   K
Sbjct: 294 NELILYIAPKLIGGSGKHQFYKTDEVIDLPEATQFEIVDSKLINQNLKLKLRKK 347


>gi|149914282|ref|ZP_01902813.1| riboflavin synthase subunit alpha [Roseobacter sp. AzwK-3b]
 gi|149811801|gb|EDM71634.1| riboflavin synthase subunit alpha [Roseobacter sp. AzwK-3b]
          Length = 365

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 143/363 (39%), Positives = 202/363 (55%), Gaps = 10/363 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S  DARFM+ AL   R   G    NP+V C++V++G V+GRG T  GG PHAE QAL  
Sbjct: 1   MSRDDARFMALALSLGRRGQGRCWPNPAVGCVVVREGRVVGRGWTGVGGRPHAEPQALAR 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  ARGAT YV+LEPC+H+GR+PPC++ +I  G+ RVV  V D D RVSG+G   L   
Sbjct: 61  AGAAARGATVYVSLEPCAHHGRTPPCSEALIAAGVARVVAPVSDSDPRVSGKGFARLRSA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++  E    L  +L R    R H+TLK+A S D  I  A   S  ITG  +++
Sbjct: 121 GIEVTTGVLAEEAMRDLGGFLRRAGGGRPHLTLKLATSLDGRIATASGHSQWITGPQARH 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH +RA+ DA++VG GT  ADDP LT R  G     P+RI++     L L S++ +TA 
Sbjct: 181 AVHAMRARHDAVMVGAGTARADDPMLTVRGQGDVARQPVRIVVSRRLDLPLMSQLAQTAR 240

Query: 242 LAPVIIVTEND-DPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGA 296
             PV +    D D  LA A+       I CD      D++ +L  L  +G+T +  EGG 
Sbjct: 241 EVPVWLCHGPDPDAALADAWDGIGAERIACDLTGRQLDMEAVLLALGQKGLTRIFCEGGG 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
           ++A S + + LVD ++L+ + ++IG  G+PS     L+     + F        G+D   
Sbjct: 301 SLAASLLGAGLVDELVLFSAGLMIGAEGLPSLGAMGLDRLDGAERFRLQELRALGNDAMS 360

Query: 353 EYI 355
            +I
Sbjct: 361 RWI 363


>gi|148242850|ref|YP_001228007.1| riboflavin biosynthesis protein ribD
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase)
           [Synechococcus sp. RCC307]
 gi|147851160|emb|CAK28654.1| Riboflavin biosynthesis protein ribD
           (Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase)
           [Synechococcus sp. RCC307]
          Length = 366

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 105/311 (33%), Positives = 157/311 (50%), Gaps = 4/311 (1%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQAL 60
           P    D  +M+ AL  +    G TS NP V C+++  +G ++G G     G PHAEV AL
Sbjct: 4   PPIPSDRHWMARALALAALADGRTSPNPLVGCVVLDANGELVGEGYHRQAGEPHAEVMAL 63

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AG+ A+G T YVTLEPC H+GR+PPC++ +I  G+RRVV+ + DPD RV+G G+  L 
Sbjct: 64  RRAGDRAKGGTLYVTLEPCCHHGRTPPCSEAVIAAGLRRVVIALADPDPRVAGGGIAQLK 123

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             G+ ++  + ++E      A+L R    R    LK A+S D    +    S  I+   +
Sbjct: 124 AAGMEVISGVRQAEAAQQNRAFLHRIRTGRPWGLLKWAMSLDGRTALPNGASQWISSPPA 183

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           ++ VH LRA  DA++VG GTV AD+P LT R  G +   P+R++L     L  D+++   
Sbjct: 184 RSWVHHLRAAVDAVIVGGGTVRADNPLLTSR--GQRSPEPLRVVLSRTLDLPSDAQLWDQ 241

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
                ++               +  +  I     +   LL  L  RG   +L E G  +A
Sbjct: 242 TSATTLVAHGPEAPAQARQQLDQLGVERIELVACEPAALLEALAQRGCNRVLWECGPQLA 301

Query: 300 HSFINSRLVDS 310
            + I S  V  
Sbjct: 302 AAAIASGCVQE 312


>gi|302343809|ref|YP_003808338.1| riboflavin biosynthesis protein RibD [Desulfarculus baarsii DSM
           2075]
 gi|301640422|gb|ADK85744.1| riboflavin biosynthesis protein RibD [Desulfarculus baarsii DSM
           2075]
          Length = 377

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 125/359 (34%), Positives = 181/359 (50%), Gaps = 14/359 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  FM+ AL  +R  +G +S NP+V  L+V +G ++GRG     G PHAE  AL +AG 
Sbjct: 9   LDRHFMARALALTRRGLGRSSPNPAVGALVVAEGRIVGRGWHVKKGQPHAEPLALAQAGA 68

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            ARGAT YVTLEPC+H G +PPC Q I+  G+ RVV    DP+  V+G G  +L+ +G+ 
Sbjct: 69  AARGATLYVTLEPCNHQGATPPCTQAILRAGVARVVYGAGDPNPTVAGGGGAFLAGRGLA 128

Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V+  + +E   F H +  T   + R H+ LK A + D     A   S  ITG  S+  VH
Sbjct: 129 VEAGVLAEQCAFEHRFFLTHITKGRPHVILKTAATLDGKTATASGDSRWITGPASRRFVH 188

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR   D + VG+GT L DDP+LTCRL G     P+R+I+D   ++   +K+   A    
Sbjct: 189 RLRGWCDCVCVGVGTALVDDPQLTCRLPG--GRDPLRVIVDSRLRIDHRAKVFDPAAGGG 246

Query: 245 VIIVTEN-DDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAV 298
            ++       P      R     ++          DL +LL  L  RGV  +L+EGGA +
Sbjct: 247 CLVACGPLARPADMERLRAVGAEVLRLSPAAGGGLDLAELLDHLGRRGVIGMLLEGGATL 306

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVCL 352
           A  F++  LVD ++ + +  ++G       L    +      +     R   F  DV L
Sbjct: 307 AWGFLSQGLVDEVMYFFAPKLLGGATAAPMLGGAGVAAMAQAIELGAPRLRRFNPDVLL 365


>gi|57867218|ref|YP_188900.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
           RP62A]
 gi|57637876|gb|AAW54664.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
           RP62A]
          Length = 347

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 110/354 (31%), Positives = 169/354 (47%), Gaps = 14/354 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           RFM  A++ ++   G T  NP V  ++VK+G ++G G     G  HAEVQA+E AG   +
Sbjct: 3   RFMDDAIQLAKMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLNTQ 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           GAT YV+LEPC+H+G +PPC   IIE GI +V+  V   D  +  +G + L + GI V+ 
Sbjct: 63  GATIYVSLEPCTHHGSTPPCVDKIIEAGISKVIYAV--KDTTLVSKGDEILREAGIEVEF 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
                       + T +  +   +T+K++ S D         S  IT    K  V+ LR 
Sbjct: 121 QYNENAAALYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLRH 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA++ G  T+ AD+P  T R+       P+R+IL    +L  + +I K    + + I 
Sbjct: 181 EHDAVITGRRTIEADNPLYTTRVP--DGKHPIRVILSKKGQLDFNQQIFKDT-ASEIWIY 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           TEN+     L   K  I II     D   +L  L  RG+  LLVE G  +   F+ S+ +
Sbjct: 238 TENE----KLKTNKSFIKIINISNCDTTTILQDLYQRGIGKLLVEAGPNITSQFLQSKHL 293

Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           + +ILY +  +IG  G         + +      F  V       ++ L+   K
Sbjct: 294 NELILYIAPKLIGGSGKHQFYKTDEVIDLPEATQFEIVDSKLINQNLKLKLRKK 347


>gi|227893613|ref|ZP_04011418.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Lactobacillus ultunensis DSM 16047]
 gi|227864473|gb|EEJ71894.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Lactobacillus ultunensis DSM 16047]
          Length = 352

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 104/352 (29%), Positives = 171/352 (48%), Gaps = 11/352 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D  +M+ AL+ ++     T  NP V  +IVK+  V+  G   + G  HAE  A+ +  
Sbjct: 2   EKDQYYMNLALQEAKKGRFQTWKNPMVGAVIVKNNQVLATGHHIHYGQNHAERDAISKLT 61

Query: 65  -EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            E+   +T YVTLEPC+HYG+ PPC+  I++  I+RVV+   DP   V+G+G+  L    
Sbjct: 62  PEQLFNSTLYVTLEPCNHYGKQPPCSDLIVKSKIKRVVIGQVDPHKLVTGKGIAKLKSHN 121

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +   ++ S+ +     Y       +  IT+K A S D  +         IT      +
Sbjct: 122 IEVKTGVLTSKIEELNKFYNYFYRNNKPWITIKEATSLDYRVSQNKNTRTNITNQSVYFR 181

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTA 240
           VH  RA   AI++G  T + DDP L    +   ++ P+R+I+D   +L   LD K++ T 
Sbjct: 182 VHQERANYQAIMIGSSTAIIDDPSLLT--SVKTDYPPIRVIVDRRGRLLNHLDLKVL-TD 238

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
             +   I T+N D +        NI ++     +L +++  L  R + S+ VEGG  +A 
Sbjct: 239 HQSLTWIFTQNKDLIRKKF--NDNIQVLLMKSNELSEVVNKLAQREIQSIYVEGGPTLAR 296

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           SF+N  L + +I Y +   +G  G    L  G L  N   V+ +   +++ +
Sbjct: 297 SFLNEDLANELIDYIAPTFLGSAGPAGVLPRGNL--NLHNVQIENLNNNIRI 346


>gi|251811149|ref|ZP_04825622.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875812|ref|ZP_06284679.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
           SK135]
 gi|251805369|gb|EES58026.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294837|gb|EFA87364.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
           SK135]
 gi|329730651|gb|EGG67035.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
           VCU144]
 gi|329737423|gb|EGG73677.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
           VCU028]
          Length = 347

 Score =  299 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 110/354 (31%), Positives = 169/354 (47%), Gaps = 14/354 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           RFM  A++ ++   G T  NP V  ++VK+G ++G G     G  HAEVQA+E AG   +
Sbjct: 3   RFMDDAIQLAKMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLNTQ 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           GAT YV+LEPC+H+G +PPC   IIE GI +V+  V   D  +  +G + L + GI V+ 
Sbjct: 63  GATIYVSLEPCTHHGSTPPCVDKIIEAGISKVIYAV--KDTTLVSKGDEILREAGIEVEF 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
                       + T +  +   +T+K++ S D         S  IT    K  V+ LR 
Sbjct: 121 QYNENAAALYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLRH 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA++ G  T+ AD+P  T R+       P+R+IL    +L  + +I K    + + I 
Sbjct: 181 EHDAVITGRRTIEADNPLYTTRVP--DGKHPIRVILSKKGQLDFNQQIFKDT-ASEIWIY 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           TEN+     L   K  I II     D   +L  L  RG+  LLVE G  +   F+ S+ +
Sbjct: 238 TENE----KLKTDKSFIKIINISNCDTTTILQDLYQRGIGKLLVEAGPNITSQFLQSKHL 293

Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           + +ILY +  +IG  G         + +      F  V       ++ L+   K
Sbjct: 294 NELILYIAPKLIGGSGKHQFYKTDEVIDLPEATQFEIVDSKLINQNLKLKLRKK 347


>gi|27468359|ref|NP_764996.1| riboflavin specific deaminase [Staphylococcus epidermidis ATCC
           12228]
 gi|27315905|gb|AAO05040.1|AE016748_274 riboflavin specific deaminase [Staphylococcus epidermidis ATCC
           12228]
          Length = 347

 Score =  299 bits (765), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 110/354 (31%), Positives = 169/354 (47%), Gaps = 14/354 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           RFM  A++ ++   G T  NP V  ++VK+G ++G G     G  HAEVQA+E AG   +
Sbjct: 3   RFMDDAIQLAKMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLNTQ 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           GAT YV+LEPC+H+G +PPC   IIE GI +V+  V   D  +  +G + L + GI V+ 
Sbjct: 63  GATIYVSLEPCTHHGSTPPCVHKIIEAGISKVIYAV--KDTTLVSKGDEILREAGIEVEF 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
                       + T +  +   +T+K++ S D         S  IT    K  V+ LR 
Sbjct: 121 QYNENAAALYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLRH 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA++ G  T+ AD+P  T R+       P+R+IL    +L  + +I K    + + I 
Sbjct: 181 EHDAVITGRRTIEADNPLYTTRVP--DGKHPIRVILSKKGQLDFNQQIFKDT-ASEIWIY 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           TEN+     L   K  I II     D   +L  L  RG+  LLVE G  +   F+ S+ +
Sbjct: 238 TENE----KLKTNKSFIKIISISNCDTTTILQDLYQRGIGKLLVEAGPNITSQFLQSKHL 293

Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           + +ILY +  +IG  G         + +      F  V       ++ L+   K
Sbjct: 294 NELILYIAPKLIGGSGKHQFYKTDEVIDLPEATQFEIVDSKLINQNLKLKLRKK 347


>gi|255532071|ref|YP_003092443.1| riboflavin biosynthesis protein RibD [Pedobacter heparinus DSM
           2366]
 gi|255345055|gb|ACU04381.1| riboflavin biosynthesis protein RibD [Pedobacter heparinus DSM
           2366]
          Length = 353

 Score =  299 bits (765), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 112/362 (30%), Positives = 169/362 (46%), Gaps = 32/362 (8%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---- 63
             +M   L  +   +G  S NP V C+IV DG +IG G  A  G  HAEV A+       
Sbjct: 4   ELYMQRCLELAAMGMGNVSPNPMVGCVIVSDGKIIGEGYHARFGEAHAEVNAINSVVHNY 63

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                     ATAYV+LEPC+H+G++PPCA  +I+  I++VV+   DP   V+G+G++ L
Sbjct: 64  GNTAETLLAAATAYVSLEPCAHFGKTPPCADLLIKHRIKKVVIGNTDPFDGVNGKGIEKL 123

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +V  ++E+E       + TR  ++  +I LK A S +            I+G  
Sbjct: 124 KNAGIEVVSGVLEAECSQLNRRFFTRIGQQHPYIILKWATSANGYFAPENTTQQWISGPE 183

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           +K  VH  R + DA+LVG  T +AD+P LT R       +P+RI++D H ++     I  
Sbjct: 184 AKKLVHKWRTEEDAVLVGRLTAMADNPRLTVR--EWYGRNPVRIVVDRHLQVPSSHHIYN 241

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD---LKKLLTILVGRGVTSLLVEGG 295
               A  II  E    V      ++NI+ I  +       +K+   L    + S+++EGG
Sbjct: 242 --KEAKTIIFNEQKTDV------QENIHFIQMEDMQHYLPQKIAFQLYLMDIASVIIEGG 293

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM---CVRRDYFGSDVCL 352
           A V + FI +RL D   ++RS        +  P      E N        +   G D   
Sbjct: 294 AQVLNQFIQARLWDEARVFRS-------AVSWPAGIPSPELNLQSCAITDQFPIGKDQLT 346

Query: 353 EY 354
            Y
Sbjct: 347 IY 348


>gi|330685448|gb|EGG97103.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
           VCU121]
          Length = 347

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 112/354 (31%), Positives = 170/354 (48%), Gaps = 14/354 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +FM+ A++ ++   G T  NP V  ++VKDG ++G G     G  HAEVQAL+ A  EA+
Sbjct: 3   KFMNYAIQLAQMVDGQTGVNPPVGSVVVKDGRIVGIGAHLRKGDKHAEVQALDMAQSEAK 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           GAT YV+LEPC+H+G +PPC   IIE GI++V+  V   D  +  +G   L   GI V+ 
Sbjct: 63  GATIYVSLEPCTHHGSTPPCVDKIIEAGIQKVIYAV--KDTTLISKGDDILKNAGIEVEF 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
              +        + T +      +T+K++ S D         S  IT    K  V+ LR 
Sbjct: 121 QYNAVAAQLYQDFFTAKRNGIPELTVKVSASLDGKQATDDGESKWITNKDVKKDVYQLRH 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
             DA+L G  T+ ADDP  T R+       P+R+IL    KL    ++      +P+ I 
Sbjct: 181 SHDAVLTGRKTIEADDPLYTTRI--ADGKHPIRVILSKSGKLDFGQQLFHDN-ASPIWIY 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           TEN +    L     N+ IIY +  ++K +L  L  +G+  LLVE G  +   F+ S  +
Sbjct: 238 TENKN----LTVDNSNVTIIYMEQCEIKSILKDLYHKGIGKLLVEAGPEITSEFLQSDHL 293

Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGK 357
           D ++LY +  +IG  G     +   +        F  V       ++ L    K
Sbjct: 294 DHLVLYFAPKIIGGSGKNQFFQTDQIISLPDTTQFEIVNSTLIHQNIKLVLRKK 347


>gi|293603326|ref|ZP_06685754.1| riboflavin biosynthesis protein RibD [Achromobacter piechaudii ATCC
           43553]
 gi|292818236|gb|EFF77289.1| riboflavin biosynthesis protein RibD [Achromobacter piechaudii ATCC
           43553]
          Length = 383

 Score =  298 bits (764), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 113/364 (31%), Positives = 179/364 (49%), Gaps = 16/364 (4%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P  S D  +M  AL  +   +  T+ NP V C+IV+DG ++G G T   G PHAE++AL 
Sbjct: 4   PSESDDIFWMRRALALAESVLYTTAPNPRVGCVIVRDGRMLGEGATQPPGGPHAEIRALR 63

Query: 62  EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           +A    E   GAT YVTLEPCSH+GR+PPC   ++     RVVV + DP+  V+G+GL  
Sbjct: 64  DAESRQEAVEGATLYVTLEPCSHFGRTPPCVDAVLAARPARVVVAIGDPNPLVNGQGLAR 123

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L   GI +   + E E       +++R       + +K+A S D    +    S  ITG 
Sbjct: 124 LRAAGIQVTTGVCEQEALALNAGFISRMSRGLPWVWMKMAASLDGRSALHNGMSQWITGP 183

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            ++   H  RA+S  +L G+GT+L DDP L  R        P + ++D  F +  D+++ 
Sbjct: 184 EARADGHHWRARSCVVLTGMGTILKDDPLLNVR-GVQTPRQPRKAVVDGLFVIPEDARLF 242

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLV 292
             A    VI+ T  +D   A    +KN  ++Y         DL  ++          + V
Sbjct: 243 DGAQ---VIVFTAREDAEKAARLAEKNARVVYMPGSAPGRVDLAAMMRWFAEAEFNEVHV 299

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG--IPSP-LEEGYLEKNFMCVRRDYFGSD 349
           E GA ++ + + +  VD ++LY + +++G+    +  P LE     + +  +     G+D
Sbjct: 300 EAGAGLSGALVAAGCVDELLLYLAPVLLGDAAGMVRLPMLEHLDAARRYEFIDSTLVGAD 359

Query: 350 VCLE 353
           V L 
Sbjct: 360 VRLR 363


>gi|329956196|ref|ZP_08296876.1| riboflavin biosynthesis protein RibD [Bacteroides clarus YIT 12056]
 gi|328524670|gb|EGF51731.1| riboflavin biosynthesis protein RibD [Bacteroides clarus YIT 12056]
          Length = 347

 Score =  298 bits (764), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 109/335 (32%), Positives = 169/335 (50%), Gaps = 18/335 (5%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65
            ++M   ++ ++  +   + NP V  ++V DG +IG G     G  HAEV A+    E  
Sbjct: 4   EKYMRRCIQLAQNGLCNAAPNPMVGAVVVCDGKIIGEGYHVRCGEAHAEVNAIRSVKEPS 63

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
             + +T YV+LEPCSHYG++PPCA  IIE  I R+V+   DP  +V+GRG+Q L   G  
Sbjct: 64  LLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFAKVAGRGIQKLKDAGRE 123

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG--MAGCGSVPITGFISKNQ 182
           +   ++E E +  +  ++T     R +ITLK A S D  I     G   V ++  ++   
Sbjct: 124 VTVGVLEQECRNLIRRFITFHTLHRPYITLKWAESADRYIDNFREGGKPVILSNPLTSML 183

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  RA+  AI+VG  T   D+P LT R    Q  SP+RI++D   KLS +  +    + 
Sbjct: 184 VHKKRAEHSAIMVGTRTAELDNPGLTVR--NWQGRSPVRIVIDRKQKLSPELHLFDGNVR 241

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAH 300
              ++ TE           + NI  I  D R   L +++  L  +G+ SLLVEGG  +  
Sbjct: 242 --TLVFTEKPHS------PQSNIEYIPIDFRQNILPQIMEYLYAQGLQSLLVEGGNILLQ 293

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
           SFI++ L D   +  S  ++   G+ +P     + 
Sbjct: 294 SFIDAELWDEAFVEESPSMLFS-GVKAPEIGDKIP 327


>gi|313680606|ref|YP_004058345.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Oceanithermus profundus DSM 14977]
 gi|313153321|gb|ADR37172.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Oceanithermus profundus DSM 14977]
          Length = 380

 Score =  298 bits (764), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 117/375 (31%), Positives = 178/375 (47%), Gaps = 23/375 (6%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S  D RFM  AL  +    G TS NP V  ++V  G ++G G     G PHAEV AL
Sbjct: 1   MSFSDPDRRFMQRALALAERARGHTSPNPIVGAVVVSGGRIVGEGFHPRAGEPHAEVFAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AGE ARGAT YVTLEPC+H+GR+PPC+  ++E G+ RVV    DP    SG G + L 
Sbjct: 61  RQAGEAARGATVYVTLEPCNHHGRTPPCSLALLEAGVSRVVYAAADPG-ETSGGGAERLR 119

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + G+ +   ++E E ++   A+       R  +  K A++ D  +   G G   ++  +S
Sbjct: 120 RAGVRVEAGLLEEEARVQNRAFFHAAAFGRPFVLWKAALTLDGRVAARGRGGEAVSNTLS 179

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFK 229
               H  R    A+ VG GTV ADDP LT R    +             P++++ D   K
Sbjct: 180 HRVAHGYRQACAAVAVGAGTVRADDPALTVRAPDFRAFAAMVEPPPLRDPLKVVFDSQAK 239

Query: 230 LSLDSKII----KTALLAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTI 281
               +++     +      ++ V E+ D     A       ++          ++  L  
Sbjct: 240 TPPSARLFEPGPRGEPARVLVFVGEDADADRVQALEAAGAEVVSLPAGEGGLSVEAALAE 299

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEK--NF 338
           L  RGV SLL+EGG  +A SF+ +  VD    + +  ++GEG G+      G +++   F
Sbjct: 300 LYRRGVDSLLLEGGPRLAGSFVRAGRVDRAAFFVAPRILGEGRGLIEGFSFGSMQRAMRF 359

Query: 339 MCVRRDYFGSDVCLE 353
           +  R +    D+ LE
Sbjct: 360 LPERSEVLEGDLWLE 374


>gi|329735920|gb|EGG72197.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
           VCU045]
          Length = 347

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 110/354 (31%), Positives = 169/354 (47%), Gaps = 14/354 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           RFM  A++ ++   G T  NP V  ++VK+G ++G G     G  HAEVQA+E AG   +
Sbjct: 3   RFMDDAIQLAKMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLNTQ 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           GAT YV+LEPC+H+G +PPC   IIE GI +V+  V   D  +  +G + L + GI V+ 
Sbjct: 63  GATIYVSLEPCTHHGSTPPCVHKIIEAGISKVIYAV--KDTTLVSKGDEILREAGIEVEF 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
                       + T +  +   +T+K++ S D         S  IT    K  V+ LR 
Sbjct: 121 QYNENAAALYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLRH 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA++ G  T+ AD+P  T R+       P+R+IL    +L  + +I K    + + I 
Sbjct: 181 EHDAVITGRRTIEADNPLYTTRVP--DGKHPIRVILSKKGQLDFNQQIFKDT-ASEIWIY 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           TEN+     L   K  I II     D   +L  L  RG+  LLVE G  +   F+ S+ +
Sbjct: 238 TENE----KLKTNKSFIKIINISNCDTTTILQDLYQRGIGKLLVEAGPNITSQFLQSKHL 293

Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           + +ILY +  +IG  G         + +      F  V       ++ L+   K
Sbjct: 294 NELILYIAPKLIGGSGKHQFYKTDEVIDLPEATQFEIVDSKLINQNLKLKLRKK 347


>gi|167619029|ref|ZP_02387660.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
           Bt4]
          Length = 306

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 108/306 (35%), Positives = 156/306 (50%), Gaps = 9/306 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +   +  T+ NP V C+IVKD +VIG G T   G  HAEVQAL++
Sbjct: 2   FSENDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + R AT YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L
Sbjct: 62  ARARGNDLRDATVYVTLEPCSHFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++  E       +++R    R  + +K A S D    +A   S  ITG  
Sbjct: 122 RDAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           +++  H  RA++ AIL GIGTV  DDP+L  R        P R+++D    + L +++++
Sbjct: 182 ARDDGHKWRARACAILTGIGTVREDDPQLNVR-GVDTPRQPRRVLIDSRLDIPLTARLLE 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEG 294
              L       +      A A R +   I+         DL  +L  L  RG+  L VE 
Sbjct: 241 GGSLLIFCGALDAQSEARAQALRARGAEIVPLANVRGKVDLPAMLAALGERGINELHVEA 300

Query: 295 GAAVAH 300
           G  +  
Sbjct: 301 GHKLNG 306


>gi|284107199|ref|ZP_06386340.1| riboflavin biosynthesis protein RibD [Candidatus Poribacteria sp.
           WGA-A3]
 gi|283829946|gb|EFC34225.1| riboflavin biosynthesis protein RibD [Candidatus Poribacteria sp.
           WGA-A3]
          Length = 362

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 114/341 (33%), Positives = 175/341 (51%), Gaps = 19/341 (5%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYG-RSPPC 88
            V  +IV DG V+G G     G PHAE+ AL +A   +RGAT Y TLEPC H   R+PPC
Sbjct: 1   MVGAVIVADGAVVGAGYHRRAGGPHAEIVALRQARTRSRGATLYTTLEPCCHTNKRTPPC 60

Query: 89  AQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVE 147
              I+  G+RR+V+ + DP+V+V+GRG++ L + G+ +    +  E       YL     
Sbjct: 61  VPAILASGVRRIVLAMRDPNVQVAGRGIRQLRRAGLSVDVGCLGKEAAQLNEVYLHWMKT 120

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           KR  + LK A++ D  I  A   S  ITG  ++  VH LR+Q D I VG+ TVL DDP+L
Sbjct: 121 KRPFVVLKAAMTLDGKIATASGESQWITGAKARAHVHQLRSQVDVIAVGVETVLKDDPQL 180

Query: 208 TCRLNGLQE-----HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN-DDPVLALAFR 261
           T RL+G Q        P+R+I+D   +    +++++    AP +I T     P      R
Sbjct: 181 TVRLSGGQRSATGVRQPVRLIVDSRLRTPYKARVLQGIEQAPTVIATTKLAGPRKVERLR 240

Query: 262 KKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
           K  + ++    +     L K L  L   G+ S+L+EGG+ +  +F+ + LV+ + LY + 
Sbjct: 241 KMGVQVLVLPRKGNRVSLDKCLQALGNMGIVSMLLEGGSELNAAFLRAGLVNRVALYVAP 300

Query: 318 IVIGEG------GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            ++G        G PSP     +      ++    G D+ +
Sbjct: 301 SLLGGQLTKGLLGGPSPGRLAEILP-VSNLQVQTLGEDMLV 340


>gi|239939894|ref|ZP_04691831.1| putative riboflavin/cytosine deaminase [Streptomyces roseosporus
           NRRL 15998]
 gi|239986380|ref|ZP_04707044.1| putative riboflavin/cytosine deaminase [Streptomyces roseosporus
           NRRL 11379]
 gi|291443327|ref|ZP_06582717.1| riboflavin biosynthesis protein RibD [Streptomyces roseosporus NRRL
           15998]
 gi|291346274|gb|EFE73178.1| riboflavin biosynthesis protein RibD [Streptomyces roseosporus NRRL
           15998]
          Length = 366

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 118/363 (32%), Positives = 177/363 (48%), Gaps = 16/363 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE 62
           ++ D   M  A+  +   +G TS NP V C+I    G V G G     G PHAEV AL  
Sbjct: 3   TAADITAMRRAITLAARGLGSTSPNPVVGCVITDAAGAVAGEGFHQRAGGPHAEVHALRA 62

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A + ARG TAYVTLEPC+H GR+ PC Q ++  GI RVV  V DP+   +  G   L   
Sbjct: 63  ADDRARGGTAYVTLEPCNHTGRTGPCVQALLAAGISRVVYAVGDPNP-QATGGGDTLRAA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +   ++  E      A+LT     R ++  K A + D  I  A   S  IT   ++ 
Sbjct: 122 GVQVEQGLLAEEAGAGNAAWLTSVRLGRPYVLWKYAATLDGRIAAADATSRWITSPEARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPH-FKLSLDSKIIKTA 240
            VH LRA++DA+LVG GT   DDP+L  R        P+R+++D +   +   ++++   
Sbjct: 182 DVHRLRAEADAVLVGSGTARTDDPQLGVR-GIDGATQPLRVVVDTNAAAVKPGARVLD-- 238

Query: 241 LLAPVIIVTENDDPVLALAFRK--KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
             AP +I   +D P   L      +          DL  LL  L  RGV S+L+EGG  +
Sbjct: 239 ATAPTLIAVADDAPAGHLPEAAVLRLPRAATGPGLDLDALLESLHTRGVRSVLLEGGPTL 298

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLE 353
           A +F+ +  VD ++ Y + +++G G  P+ L +  +      +R D       G D+ + 
Sbjct: 299 AGAFVAAGKVDKVVGYLAPVLLGAG--PAALADAGISTISQALRLDVTETVAIGPDLRVT 356

Query: 354 YIG 356
            + 
Sbjct: 357 AVP 359


>gi|302333432|gb|ADL23625.1| bifunctional pyrimidine reductase / riboflavin biosynthesis protein
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 343

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 112/352 (31%), Positives = 164/352 (46%), Gaps = 14/352 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A++ +    G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A GA
Sbjct: 1   MDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGNKHAEVQALDMAQQNAEGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           T Y+TLEPCSH+G +PPC   II+C I +VV      D  +   G   L   GI V+ + 
Sbjct: 61  TIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDDTLRAHGIEVECVD 118

Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
           +         +   + ++   IT+K++ S D         S  IT    K  V+ LR + 
Sbjct: 119 DERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRH 178

Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
           DA+L G  TV  DDP+ T R+      +P+++IL     +  + +I +      + I TE
Sbjct: 179 DAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TLIWIYTE 235

Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
           N +    L   + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  +D 
Sbjct: 236 NPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDE 291

Query: 311 IILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
            ILY +  +IG  G         + E      F  V  +    +V L    K
Sbjct: 292 FILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 343


>gi|332827503|gb|EGK00249.1| riboflavin biosynthesis protein RibD [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 355

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 109/337 (32%), Positives = 169/337 (50%), Gaps = 19/337 (5%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            ++M   L+ ++   G TS NP V  +IV  G +IG G     G  HAEV A+    ++A
Sbjct: 5   EKYMYRCLQLAQNGRGFTSPNPMVGAVIVHQGKIIGEGYHRQYGKAHAEVNAVNSVKDKA 64

Query: 68  --RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
             + +T YV+LEPCSH+G++PPCAQ II+  I +VVV   DP   VSGRG++ L  +GI 
Sbjct: 65  LLKDSTIYVSLEPCSHHGKTPPCAQLIIDNQIPKVVVACLDPYPAVSGRGIKMLQDRGIE 124

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG-----SVPITGFIS 179
           +   ++E E +     + T Q   R +I LK A +QD  I    C        PI+   S
Sbjct: 125 VSVGVLEKEAQALNRVFFTAQTRNRPYIYLKWAQTQDGFIDKERCDGEKPQPTPISNEFS 184

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  VH  RA++  I++G  T + D+P LT R       +P+RII+D   ++    ++   
Sbjct: 185 RMLVHKKRAETAGIMIGTNTAVNDNPSLTTRF--WYGKNPVRIIIDRQGRIPSGYQLFD- 241

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAA 297
                 II TE D        +  ++  I  D  +   + + +IL    + S+LVEGG  
Sbjct: 242 -GKVKTIIFTEKD----LYEKQSDSVIYIRTDFNESLFENIFSILKSHKIDSVLVEGGRE 296

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
           +  S I+ ++ D   +  S    G  G+ +P   GY+
Sbjct: 297 LLQSLIDIQMWDEAYIETSNACFG-KGVKAPDIRGYV 332


>gi|86142849|ref|ZP_01061288.1| riboflavin biosynthesis protein RibD [Leeuwenhoekiella blandensis
           MED217]
 gi|85830881|gb|EAQ49339.1| riboflavin biosynthesis protein RibD [Leeuwenhoekiella blandensis
           MED217]
          Length = 343

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 113/352 (32%), Positives = 172/352 (48%), Gaps = 22/352 (6%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--AR 68
           MS  L+ ++  +G T  NP V  +IV +  +IG G     G PHAEV A+    ++    
Sbjct: 1   MSRCLQLAKNGLGNTYPNPMVGSVIVYEDRIIGEGWHQQAGQPHAEVNAVNSVNDQSLLD 60

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
            AT YV+LEPCSH+G++PPC+  II  GI++VV+   DP   V+GRG++ L   G  ++ 
Sbjct: 61  KATIYVSLEPCSHFGKTPPCSDLIIAKGIKKVVIGTVDPFAEVAGRGIKKLIDAGCEVLV 120

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI-----GMAGCGSVPITGFISKNQ 182
            ++E E +     + T   +KR +I LK A S D  I       +    V IT   SK  
Sbjct: 121 GVLEQECQQLNKRFFTFHQKKRPYIILKWAESLDGFIAPEAKSRSSREPVWITNSYSKQL 180

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  RA+  +ILVG  TV AD+P LT R       SP RI+LD   K+S +S++   +  
Sbjct: 181 VHKWRAEEQSILVGTKTVEADNPSLTTR--DWSGKSPTRIVLDRELKISEESRVFDES-- 236

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           A  ++ TE            K I + +     + ++L  L   G+ S+++EGG+    +F
Sbjct: 237 ATTLVFTE---KTKESTSSTKYITVDFNKNL-ITEVLQTLYKEGLQSVIIEGGSTTLQNF 292

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           I+  L D   +++        GI +P        N   +R      D  + Y
Sbjct: 293 IDQELWDEARVFKG-KQNFHNGISAP-----KLSNAQPIRSSQLTGDHLVYY 338


>gi|320108304|ref|YP_004183894.1| riboflavin biosynthesis protein RibD [Terriglobus saanensis SP1PR4]
 gi|319926825|gb|ADV83900.1| riboflavin biosynthesis protein RibD [Terriglobus saanensis SP1PR4]
          Length = 397

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 110/340 (32%), Positives = 180/340 (52%), Gaps = 15/340 (4%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             +  D R M  AL  +R   GL S NP V C++     ++G+G   Y    HAE+ AL+
Sbjct: 4   TFTEIDRRHMEQALTLARATSGLASPNPQVGCVLAHGEEIVGQGAHRYVARDHAEIVALK 63

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +A  +A+GATAYVTLEPCSH+GR+ PCA  +IE G+ RVV    DP+ +VSG G+  + Q
Sbjct: 64  QADGKAKGATAYVTLEPCSHHGRTGPCANALIEAGVARVVAATLDPNPKVSGSGMARIEQ 123

Query: 122 KGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI-----GMAGCGSVPIT 175
            GI+    ++E + +    A+    + ++  +TLK A+S D  +        G     +T
Sbjct: 124 AGIVAQHGLLEEQARAMNDAFAHYILTRQPLVTLKSALSVDGKLAPLPANRIGNSPFWLT 183

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
           G  ++ +VH LR  +DAIL G+GT++ADDP LT R N  +     RI+LD H +L L ++
Sbjct: 184 GTAAREEVHRLRHSNDAILTGVGTLIADDPLLTDRSNLPRRRPLQRIVLDTHLRLPLTAR 243

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIY---------CDCRDLKKLLTILVGRG 286
           I+ T     +I+ +           R   + + +             D+   L +L    
Sbjct: 244 ILDTINDDLIILCSARAPDETQKHLRTLGVRVEHVSEILTKRGTHELDIPGTLKLLGTFD 303

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           + S+L+E G ++  +F+++ +VD  +L+ ++  +G   +P
Sbjct: 304 LLSVLLEAGPSLNTAFLDADMVDKAVLFFAETELGNDALP 343


>gi|256819357|ref|YP_003140636.1| riboflavin biosynthesis protein RibD [Capnocytophaga ochracea DSM
           7271]
 gi|256580940|gb|ACU92075.1| riboflavin biosynthesis protein RibD [Capnocytophaga ochracea DSM
           7271]
          Length = 331

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 97/337 (28%), Positives = 159/337 (47%), Gaps = 16/337 (4%)

Query: 1   MPVSSF--DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
           M  S    D  +M   ++ +   +G T  NP V  +IV +G +IG G     G  HAEV+
Sbjct: 1   MTTSELTIDEWYMRRCIQLAYNGLGSTYPNPMVGSVIVYEGRIIGEGWHQKAGEAHAEVR 60

Query: 59  ALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           A+    ++     +T YV+LEPC H+G++PPCA  II   I RVV+   DP  +V G+G+
Sbjct: 61  AITSVKDKSLLPKSTIYVSLEPCCHFGKTPPCADLIIAHKIGRVVIGTTDPFAKVHGKGI 120

Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV--- 172
           + L   G  ++  + E+E +     + T   + R +I LK A ++D  I       V   
Sbjct: 121 EKLRNAGCEVIVGVCEAECRELNKRFFTFHEKHRPYIILKWAETRDGFIAPLHKEEVAPH 180

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
            I+   ++   H +R +   I+VG+GTVLAD+P L  R       +P+RII+DP  +   
Sbjct: 181 WISDVYARQTAHQMRTEEQGIVVGVGTVLADNPSLDSR--SWYGRNPVRIIIDPKLRSPK 238

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
           +  +                +          +   I    + L+++   L    + S++V
Sbjct: 239 EFAVWNDRTTT-----LFFTEETSVPEMIHTDFFTIDFKHKPLEQICAKLYEMNLQSMIV 293

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
           EGGA     FI+  L D  +++   I  GE G+ +P+
Sbjct: 294 EGGAYTLQQFIDEGLWDEAVVFTGDICFGE-GVKAPI 329


>gi|330466988|ref|YP_004404731.1| riboflavin biosynthesis protein ribd [Verrucosispora maris
           AB-18-032]
 gi|328809959|gb|AEB44131.1| riboflavin biosynthesis protein ribd [Verrucosispora maris
           AB-18-032]
          Length = 353

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 119/367 (32%), Positives = 180/367 (49%), Gaps = 28/367 (7%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59
           M   S D   M  A+  +   +G TS NP V C+++  DG V+G G  AY G PHAE+ A
Sbjct: 1   MASVSVDEA-MRRAIELAARGLGTTSPNPVVGCVLLDADGEVVGEGFHAYAGGPHAEIVA 59

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           L +AG  A+G TA VTLEPC H GR+ PC+  +++  + RVV+ V DP   V+  G   L
Sbjct: 60  LAQAGHRAKGGTAVVTLEPCDHTGRTGPCSDALVQAQVARVVIAVPDPTP-VAAGGAATL 118

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   +  +E +    A+LT       ++  K A + D     A   S+ IT   
Sbjct: 119 RAAGIRVDLGVRATEAENGNVAWLTAMRRGWPYVIWKYAATLDGRSAAADGTSMWITSEA 178

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTC---RLNGLQEHSPMRIILDPHFKLSLDSK 235
           ++  VH LRA  DA++VG+GTVLADDP LT    R   L    P+R+++D   +  LD++
Sbjct: 179 ARMDVHALRATVDAVIVGVGTVLADDPRLTVRNLRDGSLAIRQPLRVVVDSAGRTPLDAQ 238

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
           I   A  A   I T               +        DL  LL  L  +GV ++L+EGG
Sbjct: 239 IRDAA--ARTWIAT------------AAEVGAGPDGGVDLPALLAALHAKGVRAVLLEGG 284

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDV 350
             +A +F+ + LVD ++ Y +  ++G G  P+ L +  +       +         G D+
Sbjct: 285 PKLAGAFLAAGLVDRVVGYLAPRLLGAG--PAALVDAGVTTIAEAIDLEITDVTQIGPDL 342

Query: 351 CLEYIGK 357
            +  + +
Sbjct: 343 RITALPR 349


>gi|46575874|dbj|BAB88916.2| deaminase [Burkholderia glumae]
          Length = 360

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 113/356 (31%), Positives = 174/356 (48%), Gaps = 18/356 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
           M+ AL  +   +  T+ NP V C+IVK G++IG G T   G  HAEV+A+++A   G E 
Sbjct: 1   MAKALELAARGLYTTTPNPRVGCVIVKHGMLIGEGYTQPAGHDHAEVRAMKDARSRGHEL 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           RGATAYVTLEPCSHYGR+PPCA+ ++E GI         P+  VSGRG   L + GI + 
Sbjct: 61  RGATAYVTLEPCSHYGRTPPCAKGLVEAGIAP-WCGDGGPEPAVSGRGYAMLREAGIEVR 119

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++E E +     +++R    R  + +K+A S D    +    S  ITG  ++   H  
Sbjct: 120 GGVLEDEARELNIGFVSRMTRARPWVRMKMAASLDGRSALPDGASSWITGSAARADGHAW 179

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA++ +IL GIGTV  DDP+L  R        P R+++D    L  +++++  A   P++
Sbjct: 180 RARACSILTGIGTVRRDDPQLNVR-GIDTPRQPRRVLIDARLDLPHEARLM--AGPPPLV 236

Query: 247 IVTENDDPVLALAFRKKNINIIYC------DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
              E D    A A   +                DL  +L  L GRG   L VE G  ++ 
Sbjct: 237 FCGELDASARARADALRRRGAEVVSLASARGSVDLAAVLAELGGRGDNELHVEAGRTLSG 296

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCL 352
           + + + LVD +++Y +  ++G            +             +  G D+ +
Sbjct: 297 ALLRAGLVDELLVYVAPSLLGADAAAMFELSAPISLESRVKLRFHEVERVGEDLRI 352


>gi|189485534|ref|YP_001956475.1| riboflavin biosynthesis protein RibD [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287493|dbj|BAG14014.1| riboflavin biosynthesis protein RibD [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 355

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 102/353 (28%), Positives = 169/353 (47%), Gaps = 16/353 (4%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           ++M  AL  ++   G   TNP V C+IVKD  ++GRG     G  HAEV A+ +AG+ A 
Sbjct: 5   KYMQLALDLAQKGKGRVYTNPLVGCVIVKDNKIVGRGWHQCFGGNHAEVNAIIDAGKNAE 64

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           GA  YVTLEPC+ YG+  PC   II+ GI+RV   V D +V       + L +  I V  
Sbjct: 65  GADLYVTLEPCNSYGKRTPCTLTIIKAGIKRVYYAVPDSNVSGGR---EILERNNIKVHE 121

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
            +  +    L     + ++ +  +++K A++ D  I      S  IT   S+N VH +RA
Sbjct: 122 GLLKKQSRILIKDYLKHLKNKPKVSIKAAMTLDGKIATYEYDSKWITSEKSRNFVHKMRA 181

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA+LVG+ T L D+P LT     L   +P+R+++D   KL     +       P +IV
Sbjct: 182 RYDAVLVGMNTALKDNPILTTHSKNL--KNPIRVVIDSGLKLPKSHHLFD--ACVPTVIV 237

Query: 249 TENDDPVLALAFRKKNINI----IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
            + +   +     ++ I +    I    +D   ++  L    +  +L+EGG+ +  S + 
Sbjct: 238 YDLNITNIPKYLNREGIILSPVNIDAAKKDFSVIIKKLDSLSIKRILIEGGSEIIASALF 297

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCL 352
           S +VD I  + +  + G     S +    ++K         ++    G D+ +
Sbjct: 298 SDVVDDIYFFIAPKITGGRTAISVVGGTGVKKMSESLCIKNMKVKKIGPDLLI 350


>gi|171915861|ref|ZP_02931331.1| riboflavin biosynthesis protein RibD [Verrucomicrobium spinosum DSM
           4136]
          Length = 354

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 105/360 (29%), Positives = 161/360 (44%), Gaps = 32/360 (8%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
             D ++M  AL  +R  +GLTS NP+V  ++V +G +IG+G     G PHAEV+AL  A 
Sbjct: 4   PEDEKWMRLALAEARRGIGLTSPNPAVGAVLVNEGRLIGQGWHHRVGQPHAEVEALRNAE 63

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
               G E RGATAYVTLEPCS +GR+  C   + + G+ RVV    DP+   +G   + L
Sbjct: 64  ANGHGAEIRGATAYVTLEPCSTHGRTGACTVALAKAGVSRVVYGATDPNPGHAGAADRLL 123

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            + GI ++  ++  E +  L  +         ++  K   S D  +      S  IT  +
Sbjct: 124 QEAGIAVLSGVLREECEEVLRPFAKWITTGLPYVVAKAGQSLDGRLTRPPGESQWITSEV 183

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKI 236
           S+     LR QSDAIL+G  T+  D+P LT R + + E    P R+++     L   + +
Sbjct: 184 SRAHAMQLRVQSDAILIGAETLRRDNPRLTLRGDAVPEGKIQPWRVVVTRGGDLPRGANL 243

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
                    +++                        R   ++L  L  RG+TSLL+E G 
Sbjct: 244 FNDEFKERTLVLEGE---------------------RCFPEILQELAARGITSLLLESGG 282

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLE 353
            +      +  VD +  Y +  + G G +         G         R +  GSDVC+ 
Sbjct: 283 NLLGQAFAAGAVDEVCWYIAPRICGGGTMAVGGLDFALGAKSVELEKARVEVLGSDVCVR 342


>gi|238063934|ref|ZP_04608643.1| riboflavin biosynthesis protein ribD [Micromonospora sp. ATCC
           39149]
 gi|237885745|gb|EEP74573.1| riboflavin biosynthesis protein ribD [Micromonospora sp. ATCC
           39149]
          Length = 353

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 117/365 (32%), Positives = 175/365 (47%), Gaps = 27/365 (7%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQAL 60
            VS  DA  M  A+  +   +G TS NP V C+++  DG V+G G  AY G PHAE+ AL
Sbjct: 3   SVSVDDA--MRRAIALATRGLGTTSPNPVVGCVLLDADGEVVGEGFHAYAGGPHAEIVAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AG  ARG TA VTLEPC H GR  PC+  +I  G+ RVV+ V DP+   SG      +
Sbjct: 61  AQAGRRARGGTAVVTLEPCDHTGRPGPCSHALIAAGVARVVIAVPDPNPVASGGAATLRA 120

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
               +   +  +E +    A+LT       ++T K A + D     A   S+ IT   ++
Sbjct: 121 GGLDVEVGVRAAEAEAGNVAWLTSMRRGWPYVTWKYAATLDGRSAAADGTSMWITSEAAR 180

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTC---RLNGLQEHSPMRIILDPHFKLSLDSKII 237
             VH LR   DA++ G+GTVLADDP LT    R   L    P+R+++D   +   D+++ 
Sbjct: 181 IDVHALRGTVDAVIAGVGTVLADDPRLTARNLRDGTLAIRQPLRVVVDTFGRTPADARVR 240

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
             A  A   + T               +        DL  LL  L  RGV + L+EGG  
Sbjct: 241 DGA--ARTWVAT------------AAEVGAGPDGRVDLPALLAELHHRGVRAALLEGGPK 286

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
           +A +F+ + LVD ++ Y +  ++G G  P+ L +  +       +         G D+ +
Sbjct: 287 LAGAFLAAGLVDRVVGYVAPKLLGAG--PTALADAGVTTIADAIDLEITDVTQVGPDLRI 344

Query: 353 EYIGK 357
             + +
Sbjct: 345 TALPR 349


>gi|319955752|ref|YP_004167019.1| riboflavin biosynthesis protein ribd [Cellulophaga algicola DSM
           14237]
 gi|319424412|gb|ADV51521.1| riboflavin biosynthesis protein RibD [Cellulophaga algicola DSM
           14237]
          Length = 351

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 108/350 (30%), Positives = 177/350 (50%), Gaps = 20/350 (5%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
             ++   ++ ++  +G T+ NP V  +IV +  +IG G T+  G PHAEV A+    ++ 
Sbjct: 5   EFYILRCIQIAQNGLGTTAPNPMVGAVIVHENKIIGEGYTSPYGGPHAEVNAINAVADKN 64

Query: 67  -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
               AT YVTLEPCSH+G++PPCA  II+  I+ VVV + DP  +V+G+G+Q L   G  
Sbjct: 65  LLVNATIYVTLEPCSHHGKTPPCADLIIKHKIKNVVVGLLDPHEKVAGQGIQKLKDAGCT 124

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG------MAGCGSVPITGFI 178
           +   ++E+E +     +LT Q + R +I LK A + D  I               IT   
Sbjct: 125 VTVGVLENECREHHKRFLTFQEKNRPYIILKWAETADGFIAPELALRTKEKQPFWITNTY 184

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           S+  VH  RA+  AILVG  TVLAD+P+L  R       +P RIILD + K++    ++ 
Sbjct: 185 SRQLVHQWRAEEQAILVGTHTVLADNPKLDVR--SWTGKNPTRIILDRNLKINTTFHVVD 242

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCD-CRDLK-KLLTILVGRGVTSLLVEGGA 296
                  II TE    +L  +  +  +  I  D  +++  ++ T L  + + S+++EGG 
Sbjct: 243 --KSIKTIIFTE----ILEESRYQSEVIYIPIDFKKNIASQICTALYLQNIQSVIIEGGL 296

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
               +FI   L D   +++   +  + G+ +P+      K    + +D  
Sbjct: 297 QTLQTFIAENLWDEARIFKGNSLF-KRGVKAPIIATRTLKETRNIEKDIL 345


>gi|83815727|ref|YP_446405.1| riboflavin biosynthesis protein RibD [Salinibacter ruber DSM 13855]
 gi|83757121|gb|ABC45234.1| riboflavin biosynthesis protein RibD [Salinibacter ruber DSM 13855]
          Length = 373

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 116/374 (31%), Positives = 169/374 (45%), Gaps = 27/374 (7%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE-- 66
           +M   L  +R   G  S NP V  +++  DG V+G G     G PHAE +AL+ A ++  
Sbjct: 3   WMKRCLDLARTGAGTVSPNPMVGAVLLAPDGTVLGEGAHRTYGGPHAEARALQAAEQQHS 62

Query: 67  ---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
               + AT YV LEPC H+G++PPC   I+E  + RVVV   DP  +  GRG++ L ++G
Sbjct: 63  PAALQNATLYVNLEPCRHHGKTPPCTDLIVEKNVPRVVVGTVDPFPQAQGRGIRQLREQG 122

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + +   + E   +    A+       R  +TLK A + D  I      S  ITG  ++  
Sbjct: 123 VEVEVGVHEHACRRLNEAFFHHVDTGRPLVTLKTAQTLDGRIATRTGDSQWITGEAARTL 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  RA+ D ILVG GT   DDP LT R   +    P+R++LD    LS D  +   A  
Sbjct: 183 VHQWRAELDGILVGRGTAAHDDPRLTVR--HVDGPQPLRLVLDRKGTLSPDRTLFTDAHA 240

Query: 243 APVIIVTEND--DPVLALAFRKKNINIIYCDC-----RDLKKLLTILV------GRGVTS 289
              + V  +D   P  A     +   I+          DL  LL  L          + S
Sbjct: 241 DDTVAVVGDDRPRPDYAGPLTNRGGAILRVPETDDAHLDLHALLQRLGTDAGRDAEPLQS 300

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDY 345
           LLVE G  +A +     LVD    + +  V+G+ G P+  + G  E +    F       
Sbjct: 301 LLVEAGPGLATALFRQDLVDRFFCFVAPKVLGD-GRPALHDLGITEMDGALTFAEQAWAT 359

Query: 346 FGSDVCLEYIGKNL 359
            G+DV L    + +
Sbjct: 360 VGADVLLRGYRRTV 373


>gi|312623117|ref|YP_004024730.1| riboflavin biosynthesis protein ribd [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203584|gb|ADQ46911.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 371

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 106/344 (30%), Positives = 165/344 (47%), Gaps = 12/344 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GE 65
            +M+ AL  ++    L   NP V C+IVK+G VIG+G     G  HAEV A+E+A   G 
Sbjct: 8   YYMNMALELAKEASPLVLPNPRVGCVIVKNGTVIGKGYHQKYGEKHAEVLAIEDAIKNGY 67

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
             + +T YVTLEPC HYG+  PC + II+ GI+RVV+   DP+  V+G+G+Q L Q G  
Sbjct: 68  LLKNSTMYVTLEPCCHYGKQLPCTEAIIKSGIKRVVIATKDPNPLVNGKGIQILKQHGTE 127

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +++ +++ E +     +         +I +K+A S D  I +                VH
Sbjct: 128 VIEGVLQKEAESINKDFFKYMKTGIPYIAIKVAQSIDGKIAIPSNKRFLFNTEEENVFVH 187

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR +  A LV + TV++D+P L  R  G     P+R++LD   ++ L+  I+KT+    
Sbjct: 188 SLRQKYMATLVSVNTVISDNPILNARY-GQIVRQPIRVVLDSKLRIPLECNIVKTSDKYS 246

Query: 245 VIIVTEN--DDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAA 297
             IV     +D        +K I II+         DL      L  + + S+LVEGG+ 
Sbjct: 247 TYIVCSENVNDTQKIELLSQKGIKIIFAKSSEDGHLDLLDTFLKLAQQKIVSVLVEGGSL 306

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341
           +  S +  R+ D        + IG       +     E+ F  +
Sbjct: 307 LNFSLLKQRIADYWYSLIFNVFIGGQNTKGAVGGEGFEQFFPKL 350


>gi|185535483|gb|ACC77864.1| riboflavin biosynthesis protein [Staphylococcus xylosus]
          Length = 347

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 109/354 (30%), Positives = 173/354 (48%), Gaps = 14/354 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
            +++ A++ ++   G T  NP V  ++V DG ++G G     G  HAEVQAL+ A + AR
Sbjct: 3   HYLNYAIQLAKMVEGQTGLNPPVGSVVVNDGRIVGMGAHLQKGGKHAEVQALDMAQDNAR 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           G T Y++LEPC+HYG +PPC   IIE GI++VV  V   D  +   G   L Q GI V  
Sbjct: 63  GGTIYISLEPCTHYGSTPPCVNKIIEAGIKKVVYAV--KDTTLPSEGDDILEQAGIEVIF 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
             +S+ +     +   + E    +T+K++ S D         S  IT    KN V  LR 
Sbjct: 121 RSQSDAESLYRDFFMAKNESIPEVTVKVSCSLDGKQATDKGESKWITNKAVKNDVFHLRH 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DA+L G GT+ AD+P+ T R+   +   P+++IL    ++  +  I +     P+ I 
Sbjct: 181 KHDAVLTGRGTIHADNPQYTTRIE--EGKHPIKVILSKTGEIDFNLDIFQLRNE-PIWIY 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           T+N +    L    +++ II      ++ +L  L  RG+ S+LVE G  V   F+ S+  
Sbjct: 238 TQNKN----LKTNIEHVEIIALTDCSIENILKDLYQRGIGSVLVEAGPTVTSEFLESKFT 293

Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGK 357
           + +ILY +  +IG  G     +   +        F  V       ++ LE   K
Sbjct: 294 NELILYYAPKIIGGSGNYQFFQSESIFNLSEVPQFEIVNSQMLEQNIKLELRKK 347


>gi|325953844|ref|YP_004237504.1| riboflavin biosynthesis protein RibD [Weeksella virosa DSM 16922]
 gi|323436462|gb|ADX66926.1| riboflavin biosynthesis protein RibD [Weeksella virosa DSM 16922]
          Length = 345

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 106/358 (29%), Positives = 165/358 (46%), Gaps = 18/358 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M     D  +M+  L+ +   +G T  NP V  +IV +  +IG G T++ G PHAEV A+
Sbjct: 1   MTQDRTDEFYMNRCLQLAANGLGNTYPNPFVGSVIVHNQNIIGEGFTSFYGGPHAEVNAI 60

Query: 61  EEA--GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                 E    +T YVTLEPC+H+G++PPC+  IIE  I RVVV   DP   V+G G+  
Sbjct: 61  HSVEKKELLPSSTLYVTLEPCAHFGKTPPCSDLIIEHKIPRVVVGCLDPFALVNGEGINR 120

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           +   GI +   ++E E       + T   +KR ++ LK A + +            I+  
Sbjct: 121 MRTHGIEVSVGILEKECLELNRRFFTIHQKKRPYVILKWAQTANGYFAPKNHTQQWISNR 180

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            SK  VH  R Q  AILVG  T + D+P+L  RL  +Q  +P+R+++D          + 
Sbjct: 181 FSKQLVHWWRTQEQAILVGKNTAIVDNPQLNSRL--VQGRNPIRVLIDYDLSTPTTHYLF 238

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
              L  P II     + V            +     +L+++L IL  + + S+++EGG+ 
Sbjct: 239 DQTL--PTIIF----NKVKGGKNELIEYIQLQSKENNLEEILRILYQKNIQSIIIEGGSR 292

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
              +FI   L D   ++ S  V  E GI +P        +    +     +D    Y 
Sbjct: 293 TLQTFIEQNLWDEARVFSSSTV-WEDGIFAP------HLHKKPSKTQIIDNDFLRIYR 343


>gi|301308353|ref|ZP_07214307.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 20_3]
 gi|300833823|gb|EFK64439.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 20_3]
          Length = 359

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 104/336 (30%), Positives = 172/336 (51%), Gaps = 16/336 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   + ++M+  +  ++   G  S NP V  ++V  G +IG G     G  HAEV A+  
Sbjct: 1   MVEVEEKYMARCIELAKGGRGNVSPNPMVGAVVVHKGRIIGEGFHRKCGEAHAEVNAIAS 60

Query: 63  AGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             +E   + +T YV+LEPCSHYG++PPCA+ II  GI RVVV   DP   VSGRG++ L 
Sbjct: 61  VKDESLLKDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGCLDPFPEVSGRGVRMLR 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP----IT 175
           + G+ +V  +ME E +    A++T Q + R +I LK A S+D  I             ++
Sbjct: 121 EAGVEVVTGVMEEEARALNKAFMTLQTKGRPYIILKWAQSEDGFIDRLRTDVSEPVTVLS 180

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
              +   VH LR++  AI+VG  T L D+P L  R      +SP+R++LD    +    +
Sbjct: 181 SPETSRLVHKLRSEVAAIMVGTRTALLDNPSLNVR--HWSGNSPVRVVLDRRLVIPDSYR 238

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
           ++     +  +I TE +               I  +   ++++L  L  R + SLLVEGG
Sbjct: 239 LLN--GFSRTLIFTEKE----VENRENMEYIRIDFEGPVIRQVLDHLAARKLDSLLVEGG 292

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           A + +SF+ + + D + +  + + +   G+ +P+  
Sbjct: 293 AQLINSFVEADVWDEVRVETAPVRL-YQGVHAPMLG 327


>gi|262196460|ref|YP_003267669.1| riboflavin biosynthesis protein RibD [Haliangium ochraceum DSM
           14365]
 gi|262079807|gb|ACY15776.1| riboflavin biosynthesis protein RibD [Haliangium ochraceum DSM
           14365]
          Length = 367

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 110/350 (31%), Positives = 164/350 (46%), Gaps = 13/350 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M+  L  +R   G T+ NP V C+IV   G VI  G     G PHAE +AL +    A G
Sbjct: 1   MARCLELARRAEGRTAPNPMVGCVIVAPSGEVIAEGYHRRAGAPHAEAEALAQLDGRAPG 60

Query: 70  ATAYVTLEPCSHYG--RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            T YV LEPC H    R+ PCA  + E GI R+VV + DP    +G       Q   +  
Sbjct: 61  CTMYVNLEPCRHRRKRRTVPCAPAVAEAGIARLVVGMGDPIRSHAGGAAWLARQGVSVTR 120

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++ ++ +     ++TR  + R    LK A++ D  +      S  ITG  ++   H LR
Sbjct: 121 GVLRADCRDLNRGFITRARKGRPWFALKAAMTLDGKVATRTGDSQWITGPQARAHGHGLR 180

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII--KTALLAPV 245
            + DA+LVGIGTVLADDP LT R        P+R+++D   +  LD++++   T+  A  
Sbjct: 181 DRLDAMLVGIGTVLADDPRLTAR-GARDARDPVRVVVDSRLRTPLDARLLPANTSSPART 239

Query: 246 IIVTENDDPV-LALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           II      P             +         DL+ L   L    + ++LVEGGA +  +
Sbjct: 240 IIAASERAPRTRERRLADAGAEVWRVGAGPRVDLEALAQRLAAAELNTVLVEGGAELHAA 299

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGS 348
           F+ + L D ++LY + +V+G  G  S    L    +E+     R  + G 
Sbjct: 300 FVAADLADELLLYVAPMVLGGRGRDSGLGWLGGAGVERLADATRFSFRGD 349


>gi|159898944|ref|YP_001545191.1| riboflavin biosynthesis protein RibD [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891983|gb|ABX05063.1| riboflavin biosynthesis protein RibD [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 371

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 121/349 (34%), Positives = 174/349 (49%), Gaps = 16/349 (4%)

Query: 23  GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
           G TS NP+V  ++V+ G ++GRG T   G  HAEV AL EAGE+ARGA+ YVTLEPC+ +
Sbjct: 22  GRTSPNPAVGAVVVQAGQIVGRGHTQPAGQAHAEVMALREAGEQARGASLYVTLEPCTIW 81

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI--FLHA 140
           GR+PPC   II  GI  V++   DP+ R        L   GI V    E E        A
Sbjct: 82  GRTPPCTDAIIAAGIAEVIIASRDPNPRFEHDAATVLQAAGIRVGFAPEYEAAAIGQTEA 141

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +    V K+  +T+K A+S D  I      +  I+G  S+ +VH LR Q+DAILVGI TV
Sbjct: 142 FRHWIVTKQPFVTVKYAMSLDGKIATRTGDARWISGPASRQKVHELRDQTDAILVGINTV 201

Query: 201 LADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           LADDP LT RL         P+R++LD   ++   + ++  A+    II T         
Sbjct: 202 LADDPLLTTRLEQHWRPVQHPVRVVLDARGRMPASAAMLADAVPGSTIIATTAAASAAWR 261

Query: 259 AFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
           A    N  I+           +  LL  L  RG++SL+VEGG     +F+ ++ V  + +
Sbjct: 262 ASLN-NAEILELPSNLEGRVSIPALLNELGQRGISSLMVEGGGETIAAFLAAQAVQKVQV 320

Query: 314 YRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
             +  +IG G  PSP+    + +      +     +  G+D+ L     
Sbjct: 321 VIAPKIIG-GVAPSPVAGVGIARMSEAQLWQVRSSEQIGADIWLTAYPN 368


>gi|78185053|ref|YP_377488.1| riboflavin biosynthesis protein RibD [Synechococcus sp. CC9902]
 gi|78169347|gb|ABB26444.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Synechococcus sp. CC9902]
          Length = 349

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 110/354 (31%), Positives = 176/354 (49%), Gaps = 12/354 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  AL  +    G TS NP V  +++   G ++G G  A  G PHAEV AL +AG+ A+G
Sbjct: 1   MRRALALAALADGHTSPNPLVGAVVLDQHGCLVGEGFHARAGEPHAEVGALAQAGDRAKG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
            T  VTLEPC H+G +PPCA  +++ GI RVV+ ++DPD RV+G G+  L   G+ ++  
Sbjct: 61  GTLVVTLEPCCHHGLTPPCADAVLKAGIHRVVIALEDPDPRVAGGGIARLRSAGLEVMSG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++++E      A+L R    R   TLK A+  D    +    S  I+G +++  VH LR+
Sbjct: 121 VLQAEAVFQNRAFLHRVRTGRPWGTLKWAMGLDGRNALTNGESQWISGPMARQWVHQLRS 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           +SDA++VG GTV  DDP LT R  G +   P+R++L    +L   +++  T  LAP ++ 
Sbjct: 181 KSDAVIVGGGTVRTDDPLLTSR--GRRMPEPLRVVLSRSMELPELAQLWDTT-LAPTLVA 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
                P             +     + + L+  L  RG   +L E G  +A + I    +
Sbjct: 238 HG---PESQDRPFPSGPQRLLLSASEPEPLMQELANRGCNRVLWECGPELAAAAIRQGCI 294

Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362
             +    +  ++G     +PL +      F  + +   GS +    +G +   Q
Sbjct: 295 QDVAAVVAPKLMGGVPARTPLGDLG----FTAMDQVVAGSFLSPVPLGDDWLFQ 344


>gi|70726154|ref|YP_253068.1| riboflavin specific deaminase [Staphylococcus haemolyticus
           JCSC1435]
 gi|68446878|dbj|BAE04462.1| riboflavin specific deaminase [Staphylococcus haemolyticus
           JCSC1435]
          Length = 347

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 105/353 (29%), Positives = 169/353 (47%), Gaps = 14/353 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  A++ ++   G T  NP V  ++V +G ++G G     G  HAEVQAL+ AG+EA+G
Sbjct: 4   FMEYAIQLAQMVKGQTGINPPVGAVVVNNGRIVGLGAHLKQGEKHAEVQALDMAGKEAKG 63

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
              Y++LEPC+H+G +PPC   IIE G+ +V+  V   D  +   G   L Q GI V+  
Sbjct: 64  GIIYISLEPCTHFGSTPPCVNKIIEFGLSKVIYAV--KDTTLPSEGDAILEQAGIDVEYQ 121

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
              E       +   +  +   IT+K++VS D         S  IT    K  V+ LR  
Sbjct: 122 YSEEAAALYKDFFKAKSGQIPEITMKVSVSLDGKQATDLGQSKWITNSEVKQDVYHLRHT 181

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DA+L G GT+ AD+P  T R+      +P+RI+L     +    ++ + +  + V I T
Sbjct: 182 HDAVLTGNGTINADNPLYTTRIP--NGKNPIRIVLAKSGNVDFTKQLFQDSS-SEVWIYT 238

Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
           EN      L    +NI +I  D   LK +L  +  RG+ SLL+E G  +   F+ +  ++
Sbjct: 239 ENQ----TLESPNRNIKVICIDKCYLKDILKDIYKRGIGSLLIEAGPRITSKFLQTDFIN 294

Query: 310 SIILYRSQIVIGEGGI-----PSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
            +I+Y +  +IG  G       + + +      F     +    ++ +    K
Sbjct: 295 QLIIYYAPKIIGGSGKNQFYQTADIIDLNETTQFEISSTELINQNLKMILRKK 347


>gi|299822452|ref|ZP_07054338.1| riboflavin biosynthesis protein RibD [Listeria grayi DSM 20601]
 gi|299815981|gb|EFI83219.1| riboflavin biosynthesis protein RibD [Listeria grayi DSM 20601]
          Length = 394

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 113/363 (31%), Positives = 178/363 (49%), Gaps = 12/363 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--GE 65
            ++M+ A++ +R   G T  NP V  +IVK   +IG+G  A  G  HAEV A +     E
Sbjct: 27  EKWMAIAIKEARKGRGKTYKNPLVGAVIVKADRLIGKGYHASYGDVHAEVNAFQNVSNPE 86

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           E + ++ YVTLEPC+H+G+ PPC + I+E GI  V V   D +  V G+G+ +L   GI 
Sbjct: 87  ETKHSSIYVTLEPCAHHGKQPPCCEKIVEMGIEHVYVAQLDSNPLVRGKGVAYLEAHGIK 146

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   ++E E +    A+      +R  +TLK AV+ D     +      +T   +   V 
Sbjct: 147 VTIGVLEKEAEQLNPAFHFFHRHRRPLVTLKQAVTIDGKTNSSAASRTYLTDEKTSEDVQ 206

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR  S AILVG  TVL DDP LT R N +  + P+RI+LD   +       +    LA 
Sbjct: 207 QLRMGSQAILVGSETVLIDDPALTIRSNVVP-YPPVRIVLDRRGRTVDQKFQLWRDGLAE 265

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
             + T N+  +       +++ +        +K++ IL   G+ SL +EGGAA+  +F+ 
Sbjct: 266 TWLFTGNEPDI----NFAEHVRVFVDPDWTTEKVIRILAEEGIQSLCIEGGAAIHDAFLA 321

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK--NFMCVRRDYFGSDVCLEYIGK--NLC 360
           +  VD I+ Y +  ++G    P+   +   +    F     +    DV L Y  +  + C
Sbjct: 322 AGKVDRIVSYVAPYLLGGNARPAVASKRQTDALTAFELSHVEQLKEDVKLVYHRREADKC 381

Query: 361 LQE 363
           L E
Sbjct: 382 LPE 384


>gi|294508343|ref|YP_003572401.1| riboflavin biosynthesis protein RibD [Salinibacter ruber M8]
 gi|294344671|emb|CBH25449.1| riboflavin biosynthesis protein RibD [Salinibacter ruber M8]
          Length = 397

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 116/374 (31%), Positives = 169/374 (45%), Gaps = 27/374 (7%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE-- 66
           +M   L  +R   G  S NP V  +++  DG V+G G     G PHAE +AL+ A ++  
Sbjct: 27  WMKRCLDLARTGAGTVSPNPMVGAVLLAPDGTVLGEGAHRTYGGPHAEARALQAAEQQHS 86

Query: 67  ---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
               + AT YV LEPC H+G++PPC   I+E  + RVVV   DP  +  GRG++ L ++G
Sbjct: 87  PAALQNATLYVNLEPCRHHGKTPPCTDLIVEKNVPRVVVGTVDPFPQAQGRGIRQLREQG 146

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + +   + E   +    A+       R  +TLK A + D  I      S  ITG  ++  
Sbjct: 147 VEVEVGVHEHACRRLNEAFFHHVDTGRPLVTLKTAQTLDGRIATRTGDSQWITGEAARTL 206

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  RA+ D ILVG GT   DDP LT R   +    P+R++LD    LS D  +   A  
Sbjct: 207 VHQWRAELDGILVGRGTAAHDDPRLTVR--HVDGPQPLRLVLDRKGTLSPDRTLFTDAHA 264

Query: 243 APVIIVTEND--DPVLALAFRKKNINIIYCDC-----RDLKKLLTILV------GRGVTS 289
              + V  +D   P  A     +   I+          DL  LL  L          + S
Sbjct: 265 DDTVAVVGDDRPRPDYAGPLTNRGGAILRVPETDDAHLDLHALLQRLGTDAGRDAEPLQS 324

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDY 345
           LLVE G  +A +     LVD    + +  V+G+ G P+  + G  E +    F       
Sbjct: 325 LLVEAGPGLATALFRQDLVDRFFCFVAPKVLGD-GRPALHDLGITEMDGALTFAEQAWAT 383

Query: 346 FGSDVCLEYIGKNL 359
            G+DV L    + +
Sbjct: 384 VGADVLLRGYRRTV 397


>gi|168057508|ref|XP_001780756.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162667774|gb|EDQ54395.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 598

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 98/374 (26%), Positives = 171/374 (45%), Gaps = 20/374 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           SS D+R +  A   +    GL++ +P+  C+I     V+G G     G   AEVQA+E A
Sbjct: 22  SSDDSRHLLRAAELAGSLAGLSAPHPNFGCVIAHGPKVVGEGFLYAQGTKSAEVQAVERA 81

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE A+ ATAY+ LEP   +G      + + E G+ RVVV V  P   + G+ ++ L Q G
Sbjct: 82  GELAKNATAYLNLEPGDCHGDD-SAVRALREAGVSRVVVGVPHPLQHLHGKAIKALHQGG 140

Query: 124 IIVDRMME-------------SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG 170
             V+ + +                ++     L R      +  LK A++ D  I  +   
Sbjct: 141 AKVEVVGQNLLESGSGIQEAFKACQLVNAPLLYRAANGIPYSLLKYAMTVDGKIAASTGH 200

Query: 171 SVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL 230
           S  ++   S+ +V  +RA+SDAI+VG  TV  D+P LT R  G   H P+RI++     L
Sbjct: 201 STWVSSTESRKRVFEMRARSDAIVVGGNTVRRDNPRLTTRQEG--GHLPVRIVMSRCLNL 258

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
            +D+ +   +    ++   +            + + ++  D    + ++     RG  S+
Sbjct: 259 PMDANLWDVSTTQTIVTTQKGARQDFQALLASRGVEVVEFDFLTPRAVMDYCYNRGYLSI 318

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
           L E G  ++   I S ++  ++ + S  +IG    P+P+ E  + +    ++     SDV
Sbjct: 319 LWECGGMLSAPAIASGVIQKVMAFISPKIIGGITAPTPVGELGMVEMTQALQL----SDV 374

Query: 351 CLEYIGKNLCLQEL 364
             E +G ++ +  L
Sbjct: 375 AFEQVGPDMLVTGL 388


>gi|313207146|ref|YP_004046323.1| riboflavin biosynthesis protein ribd [Riemerella anatipestifer DSM
           15868]
 gi|312446462|gb|ADQ82817.1| riboflavin biosynthesis protein RibD [Riemerella anatipestifer DSM
           15868]
 gi|315022456|gb|EFT35483.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Riemerella
           anatipestifer RA-YM]
 gi|325335416|gb|ADZ11690.1| Pyrimidine deaminase [Riemerella anatipestifer RA-GD]
          Length = 339

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 103/327 (31%), Positives = 171/327 (52%), Gaps = 15/327 (4%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
            +++S  +  +    G T  NP V  +IV +GI+IG G     G PHAE+ A+     + 
Sbjct: 4   EKYISRCIALAEKARGNTYPNPLVGAVIVHNGIIIGEGYHHKAGEPHAEINAINSVENKG 63

Query: 67  -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
             + +T YV+LEPCSH+GR+PPCA  I E G ++VV+   D + +VSG+G   + + GI 
Sbjct: 64  LLKESTIYVSLEPCSHFGRTPPCATKITEIGFKKVVIGSADSNEKVSGKGKAMIEEAGIE 123

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +VD+++E   +     + T   +KR +I LK A S D  I        PI+  ++   VH
Sbjct: 124 VVDKVLEERCRWLNRRFFTFHEKKRPYIILKWAESNDGFID-RNFVPTPISNTLASQYVH 182

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            +RA+  AILVG  T L D+P L  R   L   +P R+++D   K+     I  T   AP
Sbjct: 183 KMRAEEHAILVGTQTALNDNPTLDVR--HLDGRNPTRVLIDLELKVPQSFNIFNTN--AP 238

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            II        L     + ++  I  D  + L++L+  L  + + S+++EGG+ + ++FI
Sbjct: 239 TIIFN------LHKNDNQDHLKWIKIDKENFLEELMYHLYEQQIQSIIIEGGSKMLNTFI 292

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLE 330
            ++L D  ++ ++  +    G  +P+ 
Sbjct: 293 EAQLWDEAVVIKAPNLTLNNGTKAPIF 319


>gi|242243028|ref|ZP_04797473.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Staphylococcus epidermidis W23144]
 gi|242233486|gb|EES35798.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Staphylococcus epidermidis W23144]
          Length = 343

 Score =  296 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 109/352 (30%), Positives = 169/352 (48%), Gaps = 14/352 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A++ ++   G T  NP V  ++VK+G ++G G     G  HAEVQA+E AG +A+GA
Sbjct: 1   MDDAIQLAKMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLKAQGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           T YV+LEPC+H+G +PPC   IIE GI +V+  V   D  +  +G + L + GI V+   
Sbjct: 61  TIYVSLEPCTHHGSTPPCVDKIIEAGISKVIYAV--KDTTLVSKGDEILREAGIEVEFQY 118

Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
                     + T +  +   +T+K++ S D         S  IT    K  V+ LR + 
Sbjct: 119 NENAATLYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLRHEH 178

Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
           DA++ G  T+ AD+P  T R+       P+R+IL    +L  + +I K    + + I TE
Sbjct: 179 DAVITGRRTIEADNPLYTTRVP--DGKHPIRVILSKTGQLDFNQQIFKDT-ASEIWIYTE 235

Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
           N+     L   K  I II     D   +L  L  RG+  LLVE G  +   F+ S+ ++ 
Sbjct: 236 NE----KLKTDKSFIKIINISKCDTTTILQDLYQRGIGKLLVEAGPNITSQFLQSKHLNE 291

Query: 311 IILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           +ILY +  +IG  G         + +      F  V       ++ L+   K
Sbjct: 292 LILYIAPKLIGGSGKHQFYKTDEVIDLPEATQFEIVDSKLINQNLKLKLRKK 343


>gi|149372326|ref|ZP_01891514.1| riboflavin biosynthesis protein ribD [unidentified eubacterium
           SCB49]
 gi|149354716|gb|EDM43279.1| riboflavin biosynthesis protein ribD [unidentified eubacterium
           SCB49]
          Length = 340

 Score =  296 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 102/332 (30%), Positives = 164/332 (49%), Gaps = 34/332 (10%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--AR 68
           M   ++ ++  +G T  NP V  +IV D  +IG G     G PHAEV A+    +E    
Sbjct: 1   MFRCIQLAKKGLGYTYPNPLVGSVIVVDDKIIGEGWHLEAGKPHAEVNAINSVTDEKLLE 60

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
            AT YV+LEPCSH+G++PPCA  I+  GI+ +V+   DP+ +V+G+G+  L Q G  +  
Sbjct: 61  KATIYVSLEPCSHFGKTPPCADLIVTKGIKNIVIGSTDPNPKVAGKGIIKLMQAGCKVKV 120

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV---PITGFISKNQVH 184
            +++ E       + T Q +KR +I LK A +QD  I            IT   ++ +VH
Sbjct: 121 GVLQKECDALNKRFFTFQTKKRPYIFLKWAETQDGFIAPKTRNEQAPVWITNKYARQRVH 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            +RA   AIL+G  T LAD+P LT R   +   +P+R+++D   K+   + I      A 
Sbjct: 181 QMRAAEQAILIGTNTALADNPSLTTR--DVIGSNPIRVLIDRQLKVPKTAAIFDE--QAK 236

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDL-----KKLLTILVGRGVTSLLVEGGAAVA 299
            I++TE            +N   ++ +C D       ++  +L    + S++VEGGA   
Sbjct: 237 TIVITEKSA---------ENTETVHFECVDFNKPLAHQICEVLFKHEIESVIVEGGAQTL 287

Query: 300 HSFINSRLVDSIILY----------RSQIVIG 321
            +FI+  L D   +Y          ++  + G
Sbjct: 288 QTFISENLWDEAHIYKGAVSFTEGTKAPKING 319


>gi|315224801|ref|ZP_07866622.1| riboflavin biosynthesis protein RibD [Capnocytophaga ochracea
           F0287]
 gi|314945204|gb|EFS97232.1| riboflavin biosynthesis protein RibD [Capnocytophaga ochracea
           F0287]
          Length = 331

 Score =  296 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 96/339 (28%), Positives = 157/339 (46%), Gaps = 16/339 (4%)

Query: 1   MPVSSF--DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
           M  S    D  +M   ++ +   +G T  NP V  +IV +G +IG G     G  HAEV+
Sbjct: 1   MTTSELTVDEWYMHRCIQLAYNGLGSTYPNPMVGSVIVYEGRIIGEGWHQKAGEAHAEVR 60

Query: 59  ALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           A+    ++     +T YV+LEPC H+G++PPCA  II   I RVV+   DP  +V G+G+
Sbjct: 61  AITSVKDKSLLPKSTIYVSLEPCCHFGKTPPCADLIIAHKIGRVVIGTTDPFAKVHGKGI 120

Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV--- 172
           + L   G  +   + E+E +     + T   + R +I LK A ++D  I       V   
Sbjct: 121 EKLRNAGCEVTVGVCEAECRELNKRFFTFHEKHRPYIILKWAETRDGFIAPLHKEEVAPH 180

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
            I+   ++   H +R +   I+VG+GTVLAD+P L  R       +P+RII+DP  +   
Sbjct: 181 WISDVYARQTAHQMRTEEQGIVVGVGTVLADNPSLDSR--SWYGRNPVRIIIDPKLRSPK 238

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
           +  +                +          +   I    + L+++   L    + S++V
Sbjct: 239 EFAVWNDRTTT-----LFFTEETSVPEMIHTDFFTIDFKHKPLEQICAKLYEMNLQSMIV 293

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           EGG      FI+  L D  +++   I  GE G+ +P+  
Sbjct: 294 EGGGYTLQQFIDEGLWDEAVVFTGDICFGE-GVKAPIFR 331


>gi|256545035|ref|ZP_05472403.1| riboflavin biosynthesis protein RibD [Anaerococcus vaginalis ATCC
           51170]
 gi|256399331|gb|EEU12940.1| riboflavin biosynthesis protein RibD [Anaerococcus vaginalis ATCC
           51170]
          Length = 359

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 109/360 (30%), Positives = 159/360 (44%), Gaps = 24/360 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M      ++   G T TNP V  ++VKD  +I  G     G  HAEV        +
Sbjct: 3   DKEYMRKCFELAKKARGKTLTNPLVGAVLVKDNKIISTGFHHEYGKTHAEVDCFNNLKSD 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GA  YV LEPCSH+G+  PC   II+  I++V++   D + +V   GL+ L    I +
Sbjct: 63  CDGAILYVNLEPCSHWGKQGPCTLEIIKRNIKKVIISNIDTNPKV--DGLKVLKDNNIEV 120

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++E EGK     +       R  I LK A + D  I      S  I+   S+  VH 
Sbjct: 121 VTGLLEDEGKKLNEKFFFNVKYNRPLIALKFAQTLDGKISSNINDSKWISNESSRAYVHE 180

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD---SKIIKTALL 242
           LR+  DAI+VG  T++ D+P L  R+       P+RII+D + ++  D    KI      
Sbjct: 181 LRSDYDAIIVGKNTLIKDNPSLNSRIE--NGVDPVRIIVDTNLEIEKDYMSYKIFNLKSD 238

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAV 298
               I T  D           N+NII C    +  DL  L   L    + S+LVEGG+++
Sbjct: 239 KKTYIATCKD-------TNNPNLNIIKCKMKNNHVDLNDLANKLYKMKIGSILVEGGSSL 291

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
            + F+   LVD I  + S  +I      S      ++K      F       F  D+ +E
Sbjct: 292 NYGFLQEGLVDKIYEFISPKIISGFDSKSSFYGRGVDKIKDAYEFEIEDVKRFDDDIMIE 351


>gi|149197492|ref|ZP_01874543.1| riboflavin biosynthesis protein RibD [Lentisphaera araneosa
           HTCC2155]
 gi|149139510|gb|EDM27912.1| riboflavin biosynthesis protein RibD [Lentisphaera araneosa
           HTCC2155]
          Length = 342

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 99/360 (27%), Positives = 159/360 (44%), Gaps = 33/360 (9%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            ++M  A+  +    G TS NP V  +IVKDG VI  G     G  HAE  A+  A E  
Sbjct: 3   EKWMQRAIDNALKAWGHTSPNPHVGAVIVKDGEVIADGWHKKAGTHHAEKDAITNAKEAG 62

Query: 68  R-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           R     G+T YVTLEPC  YGR+ PC ++I++ GI +VV    D +   +GRG  +L Q 
Sbjct: 63  REDDLYGSTIYVTLEPCCTYGRTEPCTEWIMDAGIAKVVYGCTDSNPEHAGRGFNYLLQA 122

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ ++  ++E E       +     E++ ++ LK+A + D  I      S  ITG  +++
Sbjct: 123 GVEIEGPILEEECLAINRFFFKWIDEQKPYVILKMAQTLDGKIATESGQSQWITGAEARH 182

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +V  LR   DAI+VG  T+  D+P L  R        P R I      L  + K      
Sbjct: 183 EVQKLRQGCDAIMVGSETLRQDNPSLNVREIE-NPRHPKRYIWSRS-DLDQNFKAFTQEG 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            A        ++                      +  L+ L G  +TSLL+EGG  +A +
Sbjct: 241 GATYCRAQSKNE---------------------WQYFLSQLGGEEITSLLLEGGGFLASA 279

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
            + +++VD I  + +  ++G     S +           +  +    ++ +   GK+  +
Sbjct: 280 ALKAQIVDEIQFFIAPKILGGEDSRSSVSGLNPLGLDEAIELE----NMQITPCGKDFLV 335


>gi|294777680|ref|ZP_06743131.1| riboflavin biosynthesis protein RibD [Bacteroides vulgatus PC510]
 gi|319640266|ref|ZP_07994991.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 3_1_40A]
 gi|294448748|gb|EFG17297.1| riboflavin biosynthesis protein RibD [Bacteroides vulgatus PC510]
 gi|317388041|gb|EFV68895.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 3_1_40A]
          Length = 350

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 112/352 (31%), Positives = 179/352 (50%), Gaps = 21/352 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D +++S  L+ +   +  T+ NP V  +IV    +IG G     G  HAEV A+    +E
Sbjct: 4   DEKYISRCLQLAYNGLCNTAPNPMVGAVIVYHDTIIGEGYHIRCGEAHAEVNAIRSVKDE 63

Query: 67  --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
              + +T YV+LEPCSHYG++PPCA  IIE  I +VV+   DP  +V+GRG++ L + GI
Sbjct: 64  NLLKESTIYVSLEPCSHYGKTPPCADLIIEKRIPKVVIGCIDPFSQVAGRGIEKLRKAGI 123

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181
            +   ++E E +  +  ++T    KR +ITLK A S D  I +   G  PI  +  ++  
Sbjct: 124 EVTVGVLEEECRHLIRRFITFNTLKRPYITLKWAESADGFIDINRTGGKPIILSNPLTSM 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH  RA+ DAILVG  T L D+P L+ R        P+R+++D    L  D ++     
Sbjct: 184 LVHKKRAEHDAILVGRHTALLDNPSLSTR--NWYGKHPVRLVIDKELTLPRDLELFN--G 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCD-CRD-LKKLLTILVGRGVTSLLVEGGAAVA 299
                + T                  I  D  +D L +++ +L  + + SLLVEGG+ + 
Sbjct: 240 KIKTFVFTRES-----PCQPNALTEYISLDFNKDILPQIMEVLYQKKIQSLLVEGGSILL 294

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
            SFI+S L D   + ++ + +   GI +P     ++K    + + YFG ++ 
Sbjct: 295 QSFIDSGLWDEAFIEKAPLRL-NNGIQAP----SIQKKHFKLNKIYFGREIM 341


>gi|253564134|ref|ZP_04841591.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_2_5]
 gi|251947910|gb|EES88192.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_2_5]
 gi|301161570|emb|CBW21110.1| putative riboflavin biosynthesis protein [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Bacteroides fragilis 638R]
          Length = 340

 Score =  295 bits (756), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 110/351 (31%), Positives = 179/351 (50%), Gaps = 22/351 (6%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE--EAR 68
           M   ++ ++  +   S NP V  +IV +G +IG G     G  HAEV A+    +    +
Sbjct: 1   MRRCIQLAKNGLCNVSPNPMVGAVIVCEGQIIGEGYHIRCGEAHAEVNAIRSVKDPSLLK 60

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
            +T YV+LEPCSH+G++PPCA  IIE  I R+V+   DP  +V+G+G+Q L   G  ++ 
Sbjct: 61  HSTIYVSLEPCSHHGKTPPCADLIIEKQIPRIVIGCQDPFSKVAGKGIQKLRDAGCEVIV 120

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQVHL 185
            ++E E +  +  ++T     R +I LK A S D  I +      P+  +  ++   VH 
Sbjct: 121 GVLEPECRELIRKFITFHTLHRPYIVLKWAESADGFIDLERTEGQPVILSTPLTSMLVHK 180

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            RA+SDAI+VG  T L D+P LT R      H+P+RI++D +  L   S +  +      
Sbjct: 181 KRAESDAIMVGTRTALLDNPALTVR--NWYGHNPVRIVMDRNHSLPQTSHL--SDNSVST 236

Query: 246 IIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           ++ TE+          K+N+  I  +     L ++L+ L  R + SL+VEGG  +  SFI
Sbjct: 237 LVFTEH------PRSGKENLEYITLNYQTDILPQILSALYQRNLQSLMVEGGRILLESFI 290

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDV 350
            S + D +I+ +S  ++   G+ +P     +    EK+F    R Y   + 
Sbjct: 291 RSGIWDEVIIEKSDKLL-YSGVKAPEISDKISYSEEKHFCTTFRHYLKRNT 340


>gi|150003437|ref|YP_001298181.1| riboflavin biosynthesis protein ribD [Bacteroides vulgatus ATCC
           8482]
 gi|254881264|ref|ZP_05253974.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 4_3_47FAA]
 gi|149931861|gb|ABR38559.1| riboflavin biosynthesis protein ribD [Bacteroides vulgatus ATCC
           8482]
 gi|254834057|gb|EET14366.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 4_3_47FAA]
          Length = 350

 Score =  295 bits (756), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 111/352 (31%), Positives = 179/352 (50%), Gaps = 21/352 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D +++S  L+ +   +  T+ NP V  +IV    +IG G     G  HAEV A+    +E
Sbjct: 4   DEKYISRCLQLAYNGLCNTAPNPMVGAVIVYHDTIIGEGYHIRCGEAHAEVNAIRSVKDE 63

Query: 67  --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
              + +T YV+LEPCSHYG++PPCA  IIE  I +VV+   DP  +V+G+G++ L + GI
Sbjct: 64  NLLKESTIYVSLEPCSHYGKTPPCADLIIEKRIPKVVIGCIDPYSQVAGKGIEKLRKAGI 123

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181
            +   ++E E +  +  ++T    KR +ITLK A S D  I +   G  PI  +  ++  
Sbjct: 124 EVTVGVLEEECRHLIRRFITFNTLKRPYITLKWAESADGFIDINRTGGKPIILSNPLTSM 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH  RA+ DAILVG  T L D+P L+ R        P+R+++D    L  D ++     
Sbjct: 184 LVHKKRAEHDAILVGRHTALLDNPSLSTR--NWYGKHPVRLVIDKELTLPRDLELFN--G 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCD-CRD-LKKLLTILVGRGVTSLLVEGGAAVA 299
                + T                  I  D  +D L +++ +L  + + SLLVEGG+ + 
Sbjct: 240 KIKTFVFTRES-----PCQPNALTEYISLDFNKDILPQIMEVLYQKKIQSLLVEGGSILL 294

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
            SFI+S L D   + ++ + +   GI +P     ++K    + + YFG ++ 
Sbjct: 295 QSFIDSGLWDEAFIEKAPLRL-NNGIQAP----SIQKKHFKLNKIYFGREIM 341


>gi|254386271|ref|ZP_05001580.1| riboflavin biosynthesis protein RibD [Streptomyces sp. Mg1]
 gi|194345125|gb|EDX26091.1| riboflavin biosynthesis protein RibD [Streptomyces sp. Mg1]
          Length = 360

 Score =  295 bits (756), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 120/354 (33%), Positives = 176/354 (49%), Gaps = 10/354 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  A+  +   +G TS NP V C+I    G V+G G     G PHAEV AL  AG  ARG
Sbjct: 1   MRRAIELAARGLGSTSPNPVVGCVITDARGAVVGEGWHQRAGGPHAEVHALRAAGTAARG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
            TAYVTLEPC+H GR+ PCAQ +IE G+ RVV  V DP+ + SG G   L   GI  +  
Sbjct: 61  GTAYVTLEPCNHTGRTGPCAQALIEAGVTRVVYAVSDPNPQASGGGAT-LRAAGIATEAG 119

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++E E +    A+LT     R H+  K A + D  I  A   S  I+   S+  VH LRA
Sbjct: 120 LLEQEAEEGNAAWLTSVRRGRPHVLWKYAATLDGRIAAADGTSRWISSPESRADVHRLRA 179

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           ++DA++VG GT+ ADDP L  R     +    P+R++LD    +   ++++  A  AP +
Sbjct: 180 EADAVVVGSGTLRADDPHLAVRGRPGTDPADQPLRVVLDTRATVRPGARVLDDA--APTL 237

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           I    D     L            +   +  LL  L  RGV S+L+EGG  +A +F+ + 
Sbjct: 238 IAVAEDADTGHLPGVDLVRLPADENGISVHALLAELHRRGVRSVLLEGGPTLAGAFVAAG 297

Query: 307 LVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
            VD ++ Y + +++G G      + ++                G D+ +  + +
Sbjct: 298 AVDKVVGYLAPVLLGAGRTALGDAGIDTIADALRLRITETVRIGPDLRVTAVPE 351


>gi|260665250|ref|ZP_05866099.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii
           SJ-7A-US]
 gi|313472797|ref|ZP_07813285.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 1153]
 gi|260560987|gb|EEX26962.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii
           SJ-7A-US]
 gi|313448878|gb|EEQ68026.2| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 1153]
          Length = 352

 Score =  295 bits (756), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 109/354 (30%), Positives = 168/354 (47%), Gaps = 13/354 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   D  FM  AL  +      T TNP V  ++VKD  V+  G     G  HAE  A+ +
Sbjct: 1   MMKTDEDFMGLALTEASKGRYHTWTNPMVGAVVVKDNQVLATGYHHRYGDVHAERDAISK 60

Query: 63  AG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
              E+   +T YVTLEPC+H G+ PPC+  II   I+RVV+   DP   V+G+G++ L  
Sbjct: 61  LTPEQLFNSTLYVTLEPCNHTGKQPPCSDLIIASKIKRVVISEIDPHSLVTGKGIKKLKA 120

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
             I +   ++  E K     Y+        ++TLK A+S D+           ITG  + 
Sbjct: 121 HNISVTTGVLAQEAKKLNQHYVYFYEHNLPYVTLKQALSLDHKCSYPNKRIQ-ITGNAAS 179

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            +VH  RA   AI+VG  T L D+P L    +  Q+H P+R+++D   +L      + + 
Sbjct: 180 QRVHQERADYQAIMVGSSTALIDNPTLLT--SIKQDHPPIRLVIDRRGRLLNQQLTLFSD 237

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
             AP  I T+N  P LA      ++ +   D   L ++L IL    V S+ VEGG A+  
Sbjct: 238 NRAPTWIFTQN--PELAKTSYPPHVKVFLLDQGTLTEVLQILAQNKVQSVYVEGGPALMK 295

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY--FGSDVCL 352
           SF+  +L   +I Y S   +G       L+   + +N   ++ +Y     D+ +
Sbjct: 296 SFVEEKLAQELITYFSPTFLGSNA----LDGFEITENLKLIQPNYQVLDKDIRI 345


>gi|238855788|ref|ZP_04646080.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 269-3]
 gi|282934748|ref|ZP_06339990.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 208-1]
 gi|238831564|gb|EEQ23909.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 269-3]
 gi|281301189|gb|EFA93491.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 208-1]
          Length = 359

 Score =  295 bits (756), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 109/354 (30%), Positives = 168/354 (47%), Gaps = 13/354 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   D  FM  AL  +      T TNP V  ++VKD  V+  G     G  HAE  A+ +
Sbjct: 8   MMKTDEDFMGLALTEASKGRYHTWTNPMVGAVVVKDNQVLATGYHHRYGDVHAERDAISK 67

Query: 63  AG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
              E+   +T YVTLEPC+H G+ PPC+  II   I+RVV+   DP   V+G+G++ L  
Sbjct: 68  LTPEQLFNSTLYVTLEPCNHTGKQPPCSDLIIASKIKRVVISEIDPHSLVTGKGIKKLKA 127

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
             I +   ++  E K     Y+        ++TLK A+S D+           ITG  + 
Sbjct: 128 HNISVTTGVLAQEAKKLNQHYVYFYEHNLPYVTLKQALSLDHKCSYPNKRIQ-ITGNAAS 186

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            +VH  RA   AI+VG  T L D+P L    +  Q+H P+R+++D   +L      + + 
Sbjct: 187 QRVHQERADYQAIMVGSSTALIDNPTLLT--SIKQDHPPIRLVIDRRGRLLNQQLTLFSD 244

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
             AP  I T+N  P LA      ++ +   D   L ++L IL    V S+ VEGG A+  
Sbjct: 245 NRAPTWIFTQN--PELAKTSYPPHVKVFLLDQGTLTEVLQILAQNKVQSVYVEGGPALMK 302

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY--FGSDVCL 352
           SF+  +L   +I Y S   +G       L+   + +N   ++ +Y     D+ +
Sbjct: 303 SFVEEKLAQELITYFSPTFLGSNA----LDGFEITENLKLIQPNYQVLDKDIRI 352


>gi|325103646|ref|YP_004273300.1| riboflavin biosynthesis protein RibD [Pedobacter saltans DSM 12145]
 gi|324972494|gb|ADY51478.1| riboflavin biosynthesis protein RibD [Pedobacter saltans DSM 12145]
          Length = 347

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 107/354 (30%), Positives = 167/354 (47%), Gaps = 22/354 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL------ 60
           D+ FM  A+  +    G  S NP V  ++  DG +IG G     G  HAEV A+      
Sbjct: 4   DSIFMQRAIDLALLGAGSVSPNPMVGAVVAHDGQIIGEGYHKKYGESHAEVNAIQNVIDN 63

Query: 61  -EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
            + A    + +T YVTLEPC+HYG++PPCA  II+  I R+V+   DP   V+G+G++ L
Sbjct: 64  FKNADHLLKQSTIYVTLEPCAHYGKTPPCADLIIKHCIPRIVIGCRDPFDSVNGKGIEKL 123

Query: 120 SQKG-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              G  ++  ++E+E       + T+  ++R ++ LK A + +            ITG  
Sbjct: 124 LIAGKEVITGVLETECLELNRRFFTQIQKQRPYVILKWAQTANGFFAPENHQQRWITGKE 183

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           SK  VH  RA+ D ILVG  T + D+P+L  RL  ++  +P R ++D +  L     ++ 
Sbjct: 184 SKILVHQWRAEEDCILVGKNTAIIDNPQLNVRL--VKGKNPKRAVIDKNLALPPHLNLLD 241

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
                   I    +  +     + K I+I   D    + +L  L  + V S++VEGG   
Sbjct: 242 N--KQETFIFNAIESKI---VGKNKYISIEDFDHFLPQYILYQLYLQDVQSVIVEGGVTT 296

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
             SFI   L D   ++ S+    E GI +P  +G        +  D  GSD   
Sbjct: 297 LQSFIKHNLWDEARIFYSEDY-WENGINAPTIKG------NQISTDKVGSDTLT 343


>gi|254562342|ref|YP_003069437.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Methylobacterium extorquens DM4]
 gi|254269620|emb|CAX25591.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Methylobacterium extorquens DM4]
          Length = 376

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 137/363 (37%), Positives = 193/363 (53%), Gaps = 11/363 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D R M  AL   R ++G T  NPSV  ++V +G ++G+ VTA GG PHAE  AL  AG
Sbjct: 13  ALDRRAMRLALALGRRNLGRTWPNPSVGAVVVAEGRIVGQAVTAVGGRPHAEPLALAMAG 72

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGAT YVTLEPCSH+GR+PPC    I  GI RVV  ++DPD RV+GRG   L   GI
Sbjct: 73  EAARGATLYVTLEPCSHHGRTPPCTDATIAAGIARVVTAIEDPDPRVAGRGHAGLRAAGI 132

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++  E       + +R    R  + LK+A ++D     +    + ITG ++   V
Sbjct: 133 TVETGLLREEAARDHRGHFSRVTRGRPSLHLKLARTRDGFAAPSTGERLKITGSVADGAV 192

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           HL RA +DAI+VGIGT  ADDP LT RL GL E SP+RI+LD   +L+  S +++ A   
Sbjct: 193 HLWRAHADAIMVGIGTARADDPSLTVRLPGLAERSPLRIVLDSTLRLNPASHLVRGARDL 252

Query: 244 PVIIVTENDDPVLALAFRKK-NINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAA 297
           P +++T    P  A        + I +         DL   L  L  RG+T +  EGG A
Sbjct: 253 PTLVLTGRGAPAHARRMLASFGVEIAFVPTDAEGRIDLPAALKALAERGLTRICSEGGPA 312

Query: 298 VAHSFINSRLVDSIILYRSQIVIGE-GGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLE 353
           +A +     L+D+  L    + +G+ GG+P+    L     + +   V    +G D  + 
Sbjct: 313 LADALAAHDLIDACTLITGSVTLGDAGGLPALGANLARRLADGSLSVVETRDYGPDTAVT 372

Query: 354 YIG 356
           Y  
Sbjct: 373 YER 375


>gi|240139918|ref|YP_002964395.1| fused diaminohydroxyphosphoribosylaminopyrimidine
           deaminase;5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Methylobacterium extorquens AM1]
 gi|240009892|gb|ACS41118.1| fused diaminohydroxyphosphoribosylaminopyrimidine
           deaminase;5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Methylobacterium extorquens AM1]
          Length = 376

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 138/363 (38%), Positives = 193/363 (53%), Gaps = 11/363 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D R M  AL   R ++G T  NPSV  ++V +G ++G+ VTA GG PHAE  AL  AG
Sbjct: 13  ALDRRAMRLALALGRRNLGRTWPNPSVGAVVVAEGRIVGQAVTAVGGRPHAEPLALAMAG 72

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGAT YVTLEPCSH+GR+PPC    I  GI RVV  ++DPD RV+GRG   L   GI
Sbjct: 73  EAARGATLYVTLEPCSHHGRTPPCTDATIAAGIARVVTAIEDPDPRVAGRGHAGLRAAGI 132

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++  E       + +R    R  + LK+A ++D     +    + ITG ++   V
Sbjct: 133 TVETGLLREEAARDHRGHFSRVTRGRPSLHLKLARTRDGFAAPSTGERLKITGSVADGAV 192

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           HL RA +DAI+VGIGT  ADDP LT RL GL E SP+RI+LD   +L+  S +++ A   
Sbjct: 193 HLWRAHADAIMVGIGTARADDPSLTVRLPGLAERSPLRIVLDSTLRLNPASHLVRGARDL 252

Query: 244 PVIIVTENDDPVLALAFRKK-NINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAA 297
           P +++T    P  A        + I +         DL   L  L  RG+T +  EGG A
Sbjct: 253 PTLVLTGRGAPAHARRMLASFGVEIAFVPTDAEGRIDLPAALKALAERGLTRICSEGGPA 312

Query: 298 VAHSFINSRLVDSIILYRSQIVIGE-GGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           +A +     L+D+  L    + +GE GG+P   + L     + +   V    +G D  + 
Sbjct: 313 LADALAAHDLIDACTLITGSVTLGEAGGLPVLGANLARRLADGSLSVVETRDYGPDTAVT 372

Query: 354 YIG 356
           Y  
Sbjct: 373 YER 375


>gi|281357052|ref|ZP_06243542.1| riboflavin biosynthesis protein RibD [Victivallis vadensis ATCC
           BAA-548]
 gi|281316610|gb|EFB00634.1| riboflavin biosynthesis protein RibD [Victivallis vadensis ATCC
           BAA-548]
          Length = 346

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 117/357 (32%), Positives = 169/357 (47%), Gaps = 35/357 (9%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL---EEA 63
           D +FM  AL  +R   GLTS NP V  +IV+DG +IGRG     G PHAE+ AL   E+ 
Sbjct: 8   DQKFMLEALALARMGWGLTSPNPMVGAVIVRDGEIIGRGYHCKAGEPHAEINALIDVEKH 67

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G +A+GAT YVTLEPCS  GR+P C   I   GI RVV+   DP+ + +GRG+Q L + G
Sbjct: 68  GLDAKGATIYVTLEPCSTVGRTPACTDAIRAAGISRVVIGSLDPNPKHAGRGVQLLEEAG 127

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +   +  +        +       R  + LK+A++ D  I  A   S  ITG  ++ +
Sbjct: 128 IQVTVGVERAACGEINRPFFKWITTGRPFVILKMAMTLDGKIATADGESKWITGPDARRR 187

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           V  LR  SDAI+VG  TV  D P LT R        P+R+I                   
Sbjct: 188 VQQLRRLSDAIMVGGETVRQDRPLLTVREPDSWPCQPLRLIASRSM-------------- 233

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDC-RDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
                    D+  L   F   N  ++  +   D  +LL  L  R +T LL+EGG  +A S
Sbjct: 234 ---------DEEELEEYFPDGNAELVRLESEEDWGRLLDELGKREITCLLIEGGGELAAS 284

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEG------YLEKNFMCVRRDYFGSDVCL 352
            + +  VD +  + +  ++G      P+  G       L +    V+  ++G D+ +
Sbjct: 285 ALQAWAVDYVEFHIAPKLLGGRD-SRPVLGGDNPDSMALAQQLHRVKVTHYGEDIAI 340


>gi|189464287|ref|ZP_03013072.1| hypothetical protein BACINT_00628 [Bacteroides intestinalis DSM
           17393]
 gi|189438077|gb|EDV07062.1| hypothetical protein BACINT_00628 [Bacteroides intestinalis DSM
           17393]
          Length = 345

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 106/348 (30%), Positives = 168/348 (48%), Gaps = 18/348 (5%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65
            ++M   ++ ++      + NP V  +IV DG +IG G     G  HAEV A+    +  
Sbjct: 4   EKYMRRCIQLAQNGFCNAAPNPMVGAVIVCDGKIIGEGYHVRCGEAHAEVNAIRSVKDTS 63

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
             + +T YV+LEPCSH+G++PPCA  IIE  I R+V+   DP  +V+GRG+Q L   G  
Sbjct: 64  LLKRSTIYVSLEPCSHHGKTPPCADLIIEKQIPRIVIGCQDPFSKVAGRGIQKLKDAGRE 123

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM--AGCGSVPITGFISKNQ 182
           +   ++E+E +  +  ++T    +R +ITLK A S D  I +   G   V ++  ++   
Sbjct: 124 VTVGVLENECRHLIRRFITFHTLRRPYITLKWAESADGFIDLHRNGGSPVILSTPLTSMM 183

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  RA+  AILVG  T   D+P L  R       SP+R+++D    LS    +      
Sbjct: 184 VHKKRAEHAAILVGTRTAELDNPSLNVR--NWYGRSPVRLVIDRRLSLSPTLHLFDGN-- 239

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            P ++ TE+       +        I      L +++ +L  R + SLLVEGG+ +  SF
Sbjct: 240 VPTLVFTEHPH----NSLPGVEYLPINFGQDILPQIMQVLYERNLQSLLVEGGSTLLQSF 295

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
           I++ L D   +  S I +      S +    +      V   YFG  +
Sbjct: 296 IDASLWDEAFVEESPIHL-----TSGVNAPKMNDKNSYVNEQYFGRSI 338


>gi|167762046|ref|ZP_02434173.1| hypothetical protein BACSTE_00394 [Bacteroides stercoris ATCC
           43183]
 gi|167700138|gb|EDS16717.1| hypothetical protein BACSTE_00394 [Bacteroides stercoris ATCC
           43183]
          Length = 347

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 109/354 (30%), Positives = 173/354 (48%), Gaps = 24/354 (6%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65
            ++M   ++ ++  +   + NP V  +IV DG +IG G     G  HAEV A+    +  
Sbjct: 4   EKYMRRCIQLAQNGLCNAAPNPMVGAVIVCDGKIIGEGYHVRCGEAHAEVNAIRSVKDPS 63

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
             + +T YV+LEPC+HYG++PPCA  IIE  I R+V+   DP  +V+GRG++ L   G  
Sbjct: 64  LLKRSTIYVSLEPCAHYGKTPPCADLIIEKEIPRIVIGCQDPFAKVAGRGIRKLKDAGRE 123

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI--GMAGCGSVPITGFISKNQ 182
           ++  ++E E +  +  ++T     R +ITLK A S D  I         V ++  ++   
Sbjct: 124 VITGVLEDECRSLIRRFITFHTLHRPYITLKWAESADKYIDKNREDGQPVILSTPLTSML 183

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  RA+ +AI+VG  T   D+P LT R    Q  SP+RI+ D   +LS   ++    + 
Sbjct: 184 VHKKRAEHNAIMVGTRTAELDNPSLTVR--NWQGRSPVRIVTDRQLRLSPKLRVFDGNVR 241

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
              ++ TE           + N+  I  D     L +++  L  +G+ SLLVEGG  +  
Sbjct: 242 --TLVFTE------KPCQPQPNVEYIPIDFQRNILPQIMEHLYMQGLQSLLVEGGNILLQ 293

Query: 301 SFINSRLVDSIILYRSQIVIGEG------GIPSP-LEEGYLEKNFMCVRRDYFG 347
           SFI++ L D   +  S + +  G      G  +P   E Y  +NF        G
Sbjct: 294 SFIDAELWDEAFVEESPLTLLSGIKAPEIGNKAPCTNEVYFGRNFRHYSATRLG 347


>gi|256839100|ref|ZP_05544610.1| riboflavin biosynthesis protein RibD [Parabacteroides sp. D13]
 gi|256740019|gb|EEU53343.1| riboflavin biosynthesis protein RibD [Parabacteroides sp. D13]
          Length = 359

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 104/336 (30%), Positives = 171/336 (50%), Gaps = 16/336 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   + ++M+  +  ++   G  S NP V  ++V  G +IG G     G  HAEV A+  
Sbjct: 1   MVEVEEKYMARCIELAKGGRGNVSPNPMVGAVVVHKGRIIGEGFHRKCGEAHAEVNAIAS 60

Query: 63  AGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             +E   + +T YV+LEPCSHYG++PPCA+ II  GI RVVV   DP   VSGRG++ L 
Sbjct: 61  VKDESLLKDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGCLDPFPEVSGRGVRMLR 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP----IT 175
           + G+ +V  +ME E +    A++T Q + R +I LK A S+D  I             ++
Sbjct: 121 EAGVEVVTGVMEEEARALNKAFMTLQTKGRPYIILKWAQSEDGFIDRLRTDVSEPVTVLS 180

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
              +   VH LR++  AI+VG  T L D+P L  R      +SP+R++LD    +    +
Sbjct: 181 SPETSRLVHKLRSEVAAIMVGTRTALLDNPSLNVR--HWSGNSPVRVVLDRRLVIPDSYR 238

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
           ++     +  +I TE +               I  +   ++++L  L  R + SLLVEGG
Sbjct: 239 LLN--GFSRTLIFTEKE----VENRENMEYIRIDFEGPVIRQVLDHLAARKLDSLLVEGG 292

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           A + +SF+ + + D   +  + + +   G+ +P+  
Sbjct: 293 AQLINSFVEADVWDEARVETAPVRL-YQGVHAPMLG 327


>gi|291545679|emb|CBL18787.1| riboflavin biosynthesis protein RibD [Ruminococcus sp. SR1/5]
          Length = 253

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 92/243 (37%), Positives = 136/243 (55%), Gaps = 3/243 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A++ ++   G T+ NP V  +IVKDG +IG G     G  HAE  A+    E 
Sbjct: 3   DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGRIIGEGYHKKYGELHAERNAIASLTEP 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GA  YVTLEPC H+G++PPC + IIE  IR+VV+   DP+ +V+G+G+Q L + G+ +
Sbjct: 63  AEGAVIYVTLEPCCHHGKTPPCTETIIEQKIRKVVIGSRDPNPKVAGKGVQMLREAGVTV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V+  M  E       +      K  ++ +K A++ D  I      S  ITG  ++ +V  
Sbjct: 123 VEDFMREECDQLNPVFFHYITTKTPYVVMKYAMTLDGKIATKTGASKWITGEAARKEVQH 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +R Q   I+ GIGTVLADDP L  R+ G    SP+RI+ D   ++  DS+I+K+A     
Sbjct: 183 MRHQYMGIMAGIGTVLADDPMLNVRVEGW--KSPVRIVCDSKLRIPPDSQIVKSAEKYRT 240

Query: 246 IIV 248
           I+ 
Sbjct: 241 IVA 243


>gi|257899304|ref|ZP_05678957.1| riboflavin specific deaminase [Enterococcus faecium Com15]
 gi|257837216|gb|EEV62290.1| riboflavin specific deaminase [Enterococcus faecium Com15]
          Length = 364

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 112/361 (31%), Positives = 174/361 (48%), Gaps = 15/361 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--GEEA 67
           FM AA+  ++   G T TNP V   IVK+G +I  G   + G  HAEV A++     EE 
Sbjct: 12  FMLAAIAEAKKGKGNTFTNPLVGAAIVKEGKLISLGAHLHYGESHAEVNAIQNCSSPEEL 71

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
             +T YVTLEPC+H G+ PPC Q I++ GI  VV+   DP+  V+G+G ++L + GI ++
Sbjct: 72  FNSTLYVTLEPCNHQGKQPPCTQAIVQSGITTVVIGQLDPNPLVAGKGREFLQKHGIKVI 131

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             + E + +     Y       R +ITLK AV+ D  I +       IT   + ++V   
Sbjct: 132 VGVEEEKCRALNPFYNHFFEMDRPYITLKQAVTLDGKISIKKGSRHSITSPKAISRVRKE 191

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALLAP 244
           R +   I+VG  TVL D+P L    +      P+RI+LD   ++  S +  + +    +P
Sbjct: 192 RGEYQGIVVGSETVLVDNPHLL--PDAENIFPPVRIVLDRRGQILKSPELNLFQ-KTTSP 248

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           V I TEN +          ++ I Y         +  +  +GV SL VEGGA +  +F+ 
Sbjct: 249 VWIFTENHELKEIFP----HVTIFYTPKFSFAFFIETMRKKGVQSLYVEGGAKIHDAFLA 304

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN--FMCVRRDYFGSDVCLEYIGKNLCLQ 362
             L D +I Y +  + G     S   E  + K+     +  +  G D+ +    K  C Q
Sbjct: 305 ESLWDEVISYIAPKLFGGTSPMSFHSERLVSKDQQLEFLEVEQLGEDIRVRGKRKQ-CSQ 363

Query: 363 E 363
           +
Sbjct: 364 D 364


>gi|327538743|gb|EGF25393.1| riboflavin biosynthesis protein RibD [Rhodopirellula baltica WH47]
          Length = 394

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 125/383 (32%), Positives = 189/383 (49%), Gaps = 31/383 (8%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D R+M+ A+  +    G    NP V C++V+D + IG+G     G PHAEV+AL   
Sbjct: 13  SAVDVRWMTEAIELAYQGRGKVEPNPPVGCVLVRDSVCIGKGYHQRFGGPHAEVEALSSC 72

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            ++A GATAYV+LEPC H+G++PPCA  +I   + RVVV V DP  +V G G++ L   G
Sbjct: 73  -DDATGATAYVSLEPCCHHGKTPPCADALIRAKVARVVVSVVDPFDQVDGGGIEKLRAAG 131

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +V  + +  G+  L AYL R       +  K A+S D  I      S  ITG  S+  
Sbjct: 132 IEVVTGIAKEAGEELLAAYLKRVRTGMPWVIAKWAMSLDGRIATQTGESKWITGPASRGA 191

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL-------------QEHSPMRIILDPHFK 229
           VH LRA  DAI VG+GTV+AD+P LT RL+ L             + +  +R++      
Sbjct: 192 VHELRASVDAIAVGMGTVIADNPLLTVRLSELAKVSAAKSTNTEDRSNQLVRLVYSRSRL 251

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALA-FRKKNINIIYCDCRDLKKL----LTILVG 284
             L S++++TA   P  ++         LA     ++    C+  D  ++    L  L  
Sbjct: 252 PDLQSQLVQTASQTPTWLIAGPQIANADLARLADHDVETWQCESADPIEMVQQSLLWLGS 311

Query: 285 RG------VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-- 336
           +       +T L+VEGG+ +  SF  +  +D +  + +   IG    P PL +  ++   
Sbjct: 312 KDNPRGLEMTHLMVEGGSQLLGSFAAADQIDEVHAFIAGSCIGGRSAPGPLGDPGIKALS 371

Query: 337 ---NFMCVRRDYFGSDVCLEYIG 356
              +    R D F +DV L Y  
Sbjct: 372 DATSLRMSRVDSFDNDVRLIYRR 394


>gi|146297767|ref|YP_001192358.1| riboflavin biosynthesis protein RibD [Flavobacterium johnsoniae
           UW101]
 gi|146152185|gb|ABQ03039.1| riboflavin biosynthesis protein RibD [Flavobacterium johnsoniae
           UW101]
          Length = 349

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 100/329 (30%), Positives = 165/329 (50%), Gaps = 16/329 (4%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
            +++   +  +R   G T  NP V  +IV +  +IG G     G PHAEV A+    ++ 
Sbjct: 5   EKYIKRCIELARNGFGTTYPNPMVGSVIVYEDTIIGEGWHKKAGEPHAEVNAVRSVKDKS 64

Query: 67  -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
             + AT YV+LEPCSH+G++PPC   II   I  VVV   DP+ +V+GRG++ L + G  
Sbjct: 65  LLKKATIYVSLEPCSHFGKTPPCCDLIIANKIPNVVVGTVDPNEKVAGRGIKKLIEAGAN 124

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG-----MAGCGSVPITGFIS 179
           +V  ++E E       + T   +KR +I LK A S D  +            V IT   S
Sbjct: 125 VVVGILEDECNELNKRFFTFHQKKRPYIILKWAESLDGFLAPEKEIDQERKPVWITNQYS 184

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  VH  R++  AIL G  TV+ D+P+L  R      ++P+R+ILD + ++S DS +   
Sbjct: 185 RQLVHKWRSEEQAILAGTQTVVDDNPKLNVR--DWSGNNPVRVILDQNNRISKDSFVFDE 242

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           +     I+ T++++    ++        I  D   ++ +L +L    + S+++EGG    
Sbjct: 243 S--VKTIVFTKSEN---MISTENTIFEKIDFDKNSIENILAVLYQHQIQSIIIEGGRQTL 297

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP 328
            SFIN  + D   ++  +    + G  +P
Sbjct: 298 ESFINENIWDEARIFIGKNTF-KKGTKAP 325


>gi|60680029|ref|YP_210173.1| putative riboflavin biosynthesis protein [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Bacteroides fragilis NCTC 9343]
 gi|60491463|emb|CAH06213.1| putative riboflavin biosynthesis protein [includes:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Bacteroides fragilis NCTC 9343]
          Length = 340

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 110/351 (31%), Positives = 180/351 (51%), Gaps = 22/351 (6%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE--EAR 68
           M   ++ ++  +   S NP V  +IV +G +IG G     G  HAEV A+    +    +
Sbjct: 1   MRRCIQLAKNGLCNVSPNPMVGAVIVCEGQIIGEGYHIRCGEAHAEVNAIRSVKDPSLLK 60

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
            +T YV+LEPCSH+G++PPCA  IIE  I R+V+   DP  +V+G+G+Q L   G  ++ 
Sbjct: 61  HSTIYVSLEPCSHHGKTPPCADLIIEKQIPRIVIGCQDPFSKVAGKGIQKLRDAGCEVIV 120

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQVHL 185
            ++E+E +  +  ++T     R +I LK A S D  I +      P+  +  ++   VH 
Sbjct: 121 GVLETECRELIRKFITFHTLHRPYIVLKWAESADGFIDLERTEGQPVILSTPLTSMLVHK 180

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            RA+SDAI+VG  T L D+P LT R      H+P+RI++D +  L   S +  +      
Sbjct: 181 KRAESDAIMVGTRTALLDNPALTVR--NWYGHNPVRIVMDRNHSLPQTSHL--SDNSVST 236

Query: 246 IIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           ++ TE+          K+N+  I  +     L ++L+ L  R + SL++EGG  +  SFI
Sbjct: 237 LVFTEH------PRSGKENLEYITLNYQTDILPQILSALYQRNLQSLMIEGGRILLESFI 290

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDV 350
            S + D +I+ +S  +I   G+ +P     +    EK+F    R Y   + 
Sbjct: 291 RSGIWDEVIIEKSDKLI-YSGVKAPEISDKISYSEEKHFCTTFRHYLKRNT 340


>gi|222099734|ref|YP_002534302.1| Riboflavin biosynthesis protein RibD [Thermotoga neapolitana DSM
           4359]
 gi|221572124|gb|ACM22936.1| Riboflavin biosynthesis protein RibD [Thermotoga neapolitana DSM
           4359]
          Length = 348

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 128/366 (34%), Positives = 186/366 (50%), Gaps = 30/366 (8%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
            RFM  A+  ++  +G  + NP V  ++VK+G +I  G   Y G PHAE  A+E A   G
Sbjct: 3   ERFMKRAIELAKKGLGRVNPNPPVGAVVVKEGRIISEGFHPYFGGPHAERVAIESAKRKG 62

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E+  G T  VTLEPC H+G++PPC   IIE GI++VV+ + DP+  VSG G++ L + GI
Sbjct: 63  EDLTGTTLVVTLEPCDHHGKTPPCTDLIIESGIKKVVIGMRDPNP-VSGSGVEKLKKHGI 121

Query: 125 IVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V   +  E    L   ++T   E R  I LK A + D  I  A   S  IT  + +++ 
Sbjct: 122 EVVEGVLEEEVKKLCEFFITYVTENRPFIALKYASTLDGKIADAEGNSKWITQDL-RHKA 180

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS-KIIKTALL 242
           H +R    A+LVG  TVL DDP LTCRL G    +P R+ILD    LS  S ++ +    
Sbjct: 181 HEMRNVYSAVLVGARTVLKDDPRLTCRLKG--GRNPTRVILDRRGILSGGSYRVFEDN-- 236

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           A VI+ TEN +    +   K        +   +  +L +L  +GV S+LVEGG+ V   F
Sbjct: 237 ARVIVFTENKEAKYPVHVEK------VLNDCSVGGILKVLYEKGVDSVLVEGGSEVLGEF 290

Query: 303 INSRLVDSIILYRSQIVIGEG-----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           +     D +  + S  V GEG     G  S + +      F  VR ++  +++ LE    
Sbjct: 291 LE--YADVVFAFYSTKVFGEGLDVFSGYRSSVSD---PPRFRIVRSEHTDTELFLEMRP- 344

Query: 358 NLCLQE 363
             C + 
Sbjct: 345 --CSRG 348


>gi|148240028|ref|YP_001225415.1| riboflavin biosynthesis protein ribD
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase)
           [Synechococcus sp. WH 7803]
 gi|147848567|emb|CAK24118.1| Riboflavin biosynthesis protein ribD
           (Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase)
           [Synechococcus sp. WH 7803]
          Length = 372

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 122/362 (33%), Positives = 185/362 (51%), Gaps = 14/362 (3%)

Query: 3   VSSFDARF---MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQ 58
           V+  D R+   M  AL  +    G TS NP V  +++   G+++G G  A  G PHAEV 
Sbjct: 4   VADPDQRWIPWMRRALALAALADGHTSPNPLVGAVVLDSSGVLVGEGFHARAGQPHAEVG 63

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           AL +AG  ARG T  VTLEPC H+GR+PPCA  +I+ GI RVVV + DPD RV+G GLQ 
Sbjct: 64  ALAQAGAAARGGTIIVTLEPCCHHGRTPPCADAVIKAGIARVVVALTDPDPRVAGGGLQR 123

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L   G+ ++  ++E+E      A++ R    R    LK A+S D    ++   S  I+G 
Sbjct: 124 LRDAGVEVISGVLEAEAAHQNLAFVYRVRTGRPWGVLKWAMSLDGRTALSNGASQWISGP 183

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            +++ VH LRAQ DA++VG GTV ADDP LT R  GL+   P+R++L     L   +++ 
Sbjct: 184 SARSWVHRLRAQCDAVIVGGGTVRADDPLLTSR--GLRSPEPLRVVLSRSLDLPDQAQLW 241

Query: 238 KTALLAPVIIVTENDDPVLALA-FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
             + +AP ++V   D P  A +      +        + + L+ +L  RG   +L E G 
Sbjct: 242 DQS-VAPTLVVHGLDAPAGARSRLDAVGVQRQELQACEPEALMAVLAQRGCNRVLWECGP 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVC 351
            +A + I    V  I    +  ++G     +PL     +          +++     D+ 
Sbjct: 301 GLAAAAIQQGCVQDIAAVIAPKLLGGEPARTPLGTLGFQAMNEVLELQGLQQQRLADDLL 360

Query: 352 LE 353
           L+
Sbjct: 361 LQ 362


>gi|293366290|ref|ZP_06612971.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319592|gb|EFE59957.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 343

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 108/352 (30%), Positives = 167/352 (47%), Gaps = 14/352 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A++ ++   G T  NP V  ++VK+G ++G G     G  HAEVQA+E AG   +GA
Sbjct: 1   MDDAIQLAKMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLNTQGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           T YV+LEPC+H+G +PPC   IIE GI +V+  V   D  +  +G + L + GI V+   
Sbjct: 61  TIYVSLEPCTHHGSTPPCVHKIIEAGISKVIYAV--KDTTLVSKGDEILREAGIEVEFQY 118

Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
                     + T +  +   +T+K++ S D         S  IT    K  V+ LR + 
Sbjct: 119 NENAAALYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLRHEH 178

Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
           DA++ G  T+ AD+P  T R+       P+R+IL    +L  + +I K    + + I TE
Sbjct: 179 DAVITGRRTIEADNPLYTTRVP--DGKHPIRVILSKKGQLDFNQQIFKDT-ASEIWIYTE 235

Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
           N+     L   K  I II     D   +L  L  RG+  LLVE G  +   F+ S+ ++ 
Sbjct: 236 NE----KLKTNKSFIKIINISNCDTTTILQDLYQRGIGKLLVEAGPNITSQFLQSKHLNE 291

Query: 311 IILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           +ILY +  +IG  G         + +      F  V       ++ L+   K
Sbjct: 292 LILYIAPKLIGGSGKHQFYKTDEVIDLPEATQFEIVDSKLINQNLKLKLRKK 343


>gi|325283811|ref|YP_004256352.1| riboflavin biosynthesis protein RibD [Deinococcus proteolyticus
           MRP]
 gi|324315620|gb|ADY26735.1| riboflavin biosynthesis protein RibD [Deinococcus proteolyticus
           MRP]
          Length = 376

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 120/358 (33%), Positives = 184/358 (51%), Gaps = 21/358 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK----DGIVIGRGVTAYGGCPHAEVQALEE 62
           D  FM+ AL  +   +G TS NP V C++V+     G V+GRG     G PHAEV AL E
Sbjct: 8   DEDFMAQALAEAARGLGRTSPNPPVGCVLVQPNGSGGEVVGRGFHPRAGEPHAEVFALRE 67

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVVV   DP+ +V+GRGL+ L   
Sbjct: 68  AGERARGATAYVTLEPCSHFGRTPPCADALMAAGVARVVVAAGDPNPQVNGRGLERLRAA 127

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG-----SVPITG 176
           GI +   ++E++       +  R +  R  +  K A++ D  +     G     +  +TG
Sbjct: 128 GIAVQTGVLEAQAVRQQAGFRARMLLGRPFVIYKYAMTLDGKVAALEEGGGSEANGAVTG 187

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
             ++ +V   R ++DAI VG+ T+L DDP+LT R   +    P  +I D   +    ++ 
Sbjct: 188 PEARARVMGWRNEADAIAVGVDTLLTDDPQLTTR-GVVGGRDPRPVIFDRQGRTPPTARA 246

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
           ++       ++VT       ALA        +      L++ L  L   GV++LL+EGG 
Sbjct: 247 LRPGA----VVVTAPGAEAPALADAGA----VLLPAATLEEALRGLHDLGVSTLLLEGGP 298

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +A +F  S L+D +  + +  ++G G  P   PL              +  G+D+ +
Sbjct: 299 TLASAFAESDLIDEVRAFIAPKLLGAGLSPLAGPLRRMNAAGMLDMYALEQLGADILV 356


>gi|265765179|ref|ZP_06093454.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 2_1_16]
 gi|263254563|gb|EEZ25997.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 2_1_16]
          Length = 340

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 109/351 (31%), Positives = 180/351 (51%), Gaps = 22/351 (6%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE--EAR 68
           M   ++ ++  +   S NP V  +IV +G +IG G     G  HAEV A+    +    +
Sbjct: 1   MRRCIQLAKNGLCNVSPNPMVGAVIVCEGQIIGEGYHIRCGEAHAEVNAIRSVKDPSLLK 60

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
            +T YV+LEPCSH+G++PPCA  IIE  I R+V+   DP  +V+G+G+Q L   G  ++ 
Sbjct: 61  HSTIYVSLEPCSHHGKTPPCADLIIEKQIPRIVIGCQDPFSKVAGKGIQKLRDAGCEVIV 120

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQVHL 185
            ++E+E +  +  ++T     R +I LK A S D  I +      P+  +  ++   VH 
Sbjct: 121 GVLETECRELIRKFITFHTLHRPYIVLKWAESADGFIDLERTEGQPVILSTPLTSMLVHK 180

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            RA+SDAI+VG  T L D+P LT R      H+P+RI++D +  L   S +  +      
Sbjct: 181 KRAESDAIMVGTRTALLDNPALTVR--NWYGHNPVRIVMDRNHSLPQTSHL--SDNSVST 236

Query: 246 IIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           ++ TE+          K+N+  I  +     L ++L+ L  R + SL++EGG  +  SFI
Sbjct: 237 LVFTEHPRA------GKENLEYITLNYQTDILPQILSALYQRNLQSLMIEGGRILLESFI 290

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDV 350
            S + D +I+ +S  ++   G+ +P     +    EK+F    R Y   + 
Sbjct: 291 RSGIWDEVIIEKSDKLL-YSGVKAPEISDKISYSEEKHFCTTFRHYLKRNT 340


>gi|295135421|ref|YP_003586097.1| bifunctional riboflavin biosynthesis protein RibD [Zunongwangia
           profunda SM-A87]
 gi|294983436|gb|ADF53901.1| bifunctional riboflavin biosynthesis protein RibD [Zunongwangia
           profunda SM-A87]
          Length = 348

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 103/357 (28%), Positives = 179/357 (50%), Gaps = 20/357 (5%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           +   +++   L+ +   +G T  NP V  +IV    +IG G     G PHAEV A+    
Sbjct: 4   NIHEKYIKRCLQLAENGLGSTYPNPMVGSVIVYKNQIIGEGWHQKAGEPHAEVNAVNSVK 63

Query: 65  EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                + +T YV+LEPCSH+G++PPC+  II  GI++VVV   DP   V+GRG++ L + 
Sbjct: 64  NRDLLKKSTIYVSLEPCSHFGKTPPCSDLIIAKGIKKVVVATVDPFAEVAGRGIKKLMEA 123

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG---MAGCGSVPITGFI 178
           G  +   ++E E +     + T   +KR +I LK A S+D  I          V I+   
Sbjct: 124 GCDVTLGVLEQEAQHLNKRFFTFHNKKRPYIILKWAQSEDGFIAPLQRKDRAPVWISNRY 183

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           SK  VH  RA+  AILVG  T + D+P+L  RL     ++P+R+++D   K+   S I  
Sbjct: 184 SKQLVHKWRAEEQAILVGTKTAIEDNPKLNTRL--YAGNNPVRVVIDRSGKIPAASAIFD 241

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
            ++    II+TEN+  + +     ++ +         +++ +IL    + S+++EGG   
Sbjct: 242 GSI--KTIIITENNQKITSKNLEYRHADFSQ---NLPEQIGSILFQENLQSVIIEGGLQT 296

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
             SFI+++L D   ++   + + + G+ +P  +G        +  +    ++   Y+
Sbjct: 297 LQSFIDAKLWDEARVFSGNVQL-KMGVSAPEFQG------KLISEEKIEDNLLKTYL 346


>gi|32474082|ref|NP_867076.1| riboflavin bifunctional biosynthesis protein RibG [Rhodopirellula
           baltica SH 1]
 gi|32444619|emb|CAD74621.1| riboflavin bifunctional biosynthesis protein RibG [Rhodopirellula
           baltica SH 1]
          Length = 427

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 125/383 (32%), Positives = 188/383 (49%), Gaps = 31/383 (8%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S+ D R+M+ A+  +    G    NP V C +V+D + IG+G     G PHAEV+AL   
Sbjct: 46  SAVDVRWMTEAIELAYQGRGKVEPNPPVGCALVRDSVCIGKGYHQRFGGPHAEVEALSSC 105

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            ++A GATAYV+LEPC H+G++PPCA  +I   + RVVV V DP  +V G G++ L   G
Sbjct: 106 -DDATGATAYVSLEPCCHHGKTPPCADALIRAKVARVVVSVVDPFDQVDGGGIEKLRAAG 164

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +V  + +  G+  L AYL R       +  K A+S D  I      S  ITG  S+  
Sbjct: 165 IEVVTGIAKEAGEELLAAYLKRVRTGMPWVIAKWAMSLDGRIATQTGESKWITGPASRGA 224

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL-------------QEHSPMRIILDPHFK 229
           VH LRA  DAI VG+GTV+AD+P LT RL+ L             + +  +R++      
Sbjct: 225 VHELRASVDAIAVGMGTVIADNPLLTVRLSELAKVSAAKSTHTEDRSNQLVRLVYSRSRL 284

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALA-FRKKNINIIYCDCRDLKKL----LTILVG 284
             L S++++TA   P  ++         LA     ++    C+  D  ++    L  L  
Sbjct: 285 PDLQSQLVQTASQTPTWLIAGPQIANADLARLADHDVETWQCESADPIEMVQQSLLWLGS 344

Query: 285 RG------VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-- 336
           +       +T L+VEGG+ +  SF  +  +D +  + +   IG    P PL +  ++   
Sbjct: 345 KDNPRGLAMTHLMVEGGSQLLGSFAAADQIDEVHAFIAGKCIGGRSAPGPLGDPGIKALS 404

Query: 337 ---NFMCVRRDYFGSDVCLEYIG 356
              +    R D F +DV L Y  
Sbjct: 405 DATSLRMSRVDSFDNDVRLIYRR 427


>gi|258651000|ref|YP_003200156.1| riboflavin biosynthesis protein RibD [Nakamurella multipartita DSM
           44233]
 gi|258554225|gb|ACV77167.1| riboflavin biosynthesis protein RibD [Nakamurella multipartita DSM
           44233]
          Length = 366

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 115/373 (30%), Positives = 172/373 (46%), Gaps = 37/373 (9%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
           ++  +   +  A   + +       NP V C+++   G  +G G     G PHAEV AL 
Sbjct: 6   LTPAEFAALHRAAELAEYGAATALPNPVVGCVLLAPGGWTVGEGYHRRPGGPHAEVAALT 65

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG  ARG TA V+LEPC+H GR+ PC+Q +I  G+ RV+V V DP    +G G+  L Q
Sbjct: 66  AAGPLARGGTAVVSLEPCNHTGRTGPCSQALIAAGVSRVIVAVRDPWPPAAG-GVDHLRQ 124

Query: 122 KGIIVDRMME------------SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC 169
            G+ V  +                 +     +L      R  +T K+ ++ D  +  A  
Sbjct: 125 AGVQVVDLPSLAGQDPAAAAAVEHAQDVNRVWLAAMRHGRPFVTWKVGMTIDGRVAAADA 184

Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPH 227
            S  IT   S+  VH LRA+ D I+VG+GTVL DDP LT R +  +     P+R+++D  
Sbjct: 185 TSRWITSPQSRADVHALRARVDTIMVGVGTVLDDDPALTVRDDQGEPVGRQPLRVVIDSS 244

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
            +    ++++  A  AP  + T       A                DL  +L  L  RG 
Sbjct: 245 GRTPAQARVLDDA--APTWLATAESAGTGAD------------GRVDLAAVLAELWRRGR 290

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVR 342
             +L+EGG  +A SF+++ LVD ++ Y +  ++G G  PS L  G +           V 
Sbjct: 291 RHVLLEGGPHLAASFLDAGLVDEVVAYVAPTLLGAG--PSALSGGAVGTLSDAHAAELVD 348

Query: 343 RDYFGSDVCLEYI 355
              FG DV L Y 
Sbjct: 349 LTRFGPDVRLRYR 361


>gi|221639820|ref|YP_002526082.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5- phosphoribosylamino)uracil reductase
           [Rhodobacter sphaeroides KD131]
 gi|221160601|gb|ACM01581.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5- phosphoribosylamino)uracil reductase
           [Rhodobacter sphaeroides KD131]
          Length = 362

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 135/358 (37%), Positives = 197/358 (55%), Gaps = 11/358 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           DA  M+ ALR     +G T  NP+V C+IVK G V+GRG T  GG PHAE  AL +AG  
Sbjct: 3   DADHMAHALRLGARGLGRTWPNPAVGCVIVKAGRVVGRGWTCPGGRPHAEPVALAQAGAA 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A GATAYVTLEPCSH+GR+PPCA+ +I  G+ RVV    DPD RVSGRG   L + GI +
Sbjct: 63  ALGATAYVTLEPCSHHGRTPPCAEALIAAGLARVVTATGDPDPRVSGRGHAMLREAGIAV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
            +R++E+E +     +L R  E    +TLK+A + D  I  A   S  ITG +++  VH 
Sbjct: 123 TERVLEAEARTAHAGFLKRVTEGLPFVTLKLAATVDGRIATASGESRWITGSLARRAVHA 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +R + DA++VG+GT +ADDP+L+ R  G   H P+RI++D   + + DS++ +TA   PV
Sbjct: 183 MRMRHDAVMVGVGTAIADDPDLSVRDLG-SGHQPVRIVVDSLLRHAPDSRLGRTARQVPV 241

Query: 246 IIVTENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
            +      P  A A    +  I+       D  + + +L  L   G+T +  EGGA +  
Sbjct: 242 WLCHGPAAPEAARAAWAASGAILLECPAGPDGLEAEAVLRRLAAEGLTRIFCEGGARLGA 301

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           + + + L D ++ + +  +IGE G  +     L        +     D  G D+   +
Sbjct: 302 ALVRAGLCDELVTFTAGKLIGEEGRGAMGALRLARLAEAPAYRLASLDTMGGDLLARW 359


>gi|260662243|ref|ZP_05863139.1| riboflavin biosynthesis protein RibD [Lactobacillus fermentum
           28-3-CHN]
 gi|260553626|gb|EEX26518.1| riboflavin biosynthesis protein RibD [Lactobacillus fermentum
           28-3-CHN]
          Length = 352

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 113/351 (32%), Positives = 161/351 (45%), Gaps = 9/351 (2%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-A 63
           S D +FM  AL  +      T  NP V  +IVKDG ++  G     G  HAE  A+ + +
Sbjct: 2   SSDEQFMQLALAEAAKGGSATWKNPQVGAVIVKDGQLLATGYHHQYGQAHAERDAISKLS 61

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            E+  GAT YVTLEPC HYG+ PPC+Q +I+    RVVV   DP   V G+G+  L   G
Sbjct: 62  NEQLAGATIYVTLEPCFHYGKQPPCSQLLIDSHFARVVVATIDPHQVVGGKGIAQLKAAG 121

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +   +++ + +     Y     ++   IT K A+S D  +  A   +  IT   ++  
Sbjct: 122 IDVEVGLLKDQAEALNRHYFYFYRQQWPWITAKQALSLDGKVAAAPGQATAITNQAARRL 181

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTAL 241
           VH  RA   AI+VG GTVLADDP L C    L    P+R+ILD   + L    + + T  
Sbjct: 182 VHQERADYHAIVVGAGTVLADDPRLLCETPQL--FPPVRVILDRAGRLLDYQDRFVFTDA 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            AP  +VT N            ++ +      D  +LL       + SL VEGG AV   
Sbjct: 240 SAPTWLVTTNRAATKVDW--PAHVTVKLLQNGDWPELLDYFKEAELQSLYVEGGPAVLTE 297

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
              +  V+ +I Y    +IG+ G+               V     G D+ +
Sbjct: 298 LFQAVPVNQLITYLDPQIIGDQGLAGAQFPAGTAFTHRTV--TQLGDDIRI 346


>gi|298373665|ref|ZP_06983654.1| riboflavin biosynthesis protein RibD [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298274717|gb|EFI16269.1| riboflavin biosynthesis protein RibD [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 349

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 100/356 (28%), Positives = 167/356 (46%), Gaps = 25/356 (7%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63
            D ++M   +  +R+  G  + NP V  +IV+DG +IG G     G  HAEV A+     
Sbjct: 3   IDEQYMRRCITLARYADGYAAPNPMVGAVIVRDGKIIGEGYHRRYGEAHAEVNAVNSVLN 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            +  R +T YV LEPCSHYG++PPC   I+  GI  VVV + D +  V G G++ L + G
Sbjct: 63  KDLLRRSTLYVNLEPCSHYGKTPPCVDLIVRSGIPNVVVGMRDVNPEVCGNGIRKLLEAG 122

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI----GMAGCGSVPITGFI 178
           + +V+ ++E E +     ++T   +KR +I LK A + D  I           + I+   
Sbjct: 123 VGVVEGVLEDECRFLNRRFITFMQKKRPYIILKWAQTADGFIDELRDTPARKPLKISNPT 182

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           +K   H +R    +I+V   T + D+P LT   +     +P+RI++D    + ++  I  
Sbjct: 183 TKTLNHCMRTHEMSIMVATRTAILDNPRLTA--SKWNGRNPIRILIDRTLSVPIEYNIFD 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGA 296
               A  ++     + +        NI  +  D     + ++L  L  R + S++VEGG 
Sbjct: 241 D--KAKTLVFNSIRNEI------NDNIEFVKLDFEQNIIPQILNELYVRNIQSVIVEGGR 292

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +  SFI   + D      S+ +I   G+P+P        +   V    FG ++C 
Sbjct: 293 RLLVSFIEYGVWDECHTEVSKQII-RNGVPAP-----SMIDLEPVAEQQFGENICF 342


>gi|254468535|ref|ZP_05081941.1| riboflavin biosynthesis protein RibD [beta proteobacterium KB13]
 gi|207087345|gb|EDZ64628.1| riboflavin biosynthesis protein RibD [beta proteobacterium KB13]
          Length = 363

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 103/362 (28%), Positives = 173/362 (47%), Gaps = 13/362 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  +  D  FM+ A++ ++  +G  + NP V  +IV D  +I  G     G PHAEV A+
Sbjct: 1   MTFNKLDFFFMAQAIKLAKKGLGQCNPNPIVGAVIVVDDKIIATGYHQEFGGPHAEVVAI 60

Query: 61  EEAGEEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
               ++A  + +T +VTLEPC+H G++PPC   I++  I+RVV+   DP+ +V+G  ++ 
Sbjct: 61  HNCKDKALLKKSTLFVTLEPCAHEGKTPPCLDLILKHDIKRVVIASQDPNPKVNGISIKS 120

Query: 119 LSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L +KG+ VD  +ME +       +  R +     +  KIAVS D    +    S  I+  
Sbjct: 121 LIEKGVEVDVGLMEDQAFNLNKGFFKRILNNIPRVVSKIAVSSDGKTALNNFQSKWISNE 180

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            S++ V  LR  SD IL    T+ +D+P  T R        P R I+D  F+ +LD+ I 
Sbjct: 181 FSRSDVQKLRRLSDGILTSYKTINSDNPRFTVRDVD-SSKQPYRFIIDASFQSNLDAHIF 239

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGA 296
           K      V+I    +        +   I +   D   +  +++  +    V +LLVE G 
Sbjct: 240 KQE---KVVIFYSKEITNKP-NLKAICIPVSCVDGVLNFTEIMKHIASMEVNNLLVEAGP 295

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKN-FMCVRRDYFGSDVCL 352
            +    +  R++D +I+Y+SQ ++G         P+      +N    +   +F  D+  
Sbjct: 296 GLNGLLLQHRMIDELIIYQSQSLLGGNAREMFNHPVITAMESRNQLKLMDCRFFDKDIRF 355

Query: 353 EY 354
            Y
Sbjct: 356 IY 357


>gi|53711798|ref|YP_097790.1| riboflavin biosynthesis protein RibD [Bacteroides fragilis YCH46]
 gi|52214663|dbj|BAD47256.1| riboflavin biosynthesis protein RibD [Bacteroides fragilis YCH46]
          Length = 340

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 109/351 (31%), Positives = 180/351 (51%), Gaps = 22/351 (6%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE--EAR 68
           M   ++ ++  +   S NP V  +IV +G +IG G     G  HAEV A+    +    +
Sbjct: 1   MRRCIQLAKNGLCNVSPNPMVGAVIVCEGQIIGEGYHIRCGEAHAEVNAIRSVKDPSLLK 60

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
            +T YV+LEPCSH+G++PPCA  IIE  I R+V+   DP  +V+G+G+Q L   G  ++ 
Sbjct: 61  HSTIYVSLEPCSHHGKTPPCADLIIEKQIPRIVIGCQDPFSKVAGKGIQKLRDAGCEVIV 120

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQVHL 185
            ++E+E +  +  ++T     R +I LK A S D  I +      P+  +  ++   VH 
Sbjct: 121 GVLETECRELIRKFITFHTLHRPYIVLKWAESADGFIDLERTEGQPVILSTPLTSMLVHK 180

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            RA+SDAI+VG  T L D+P LT R      H+P+RI++D +  L   S +  +      
Sbjct: 181 KRAESDAIMVGTRTALLDNPALTVR--NWHGHNPVRIVMDRNHSLPQTSHL--SDNSVST 236

Query: 246 IIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           ++ TE+          K+N+  I  +     L ++L+ L  R + SL++EGG  +  SFI
Sbjct: 237 LVFTEHPRA------GKENLEYITLNYQTDILPQILSALYQRNLQSLMIEGGRILLESFI 290

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDV 350
            S + D +I+ +S  ++   G+ +P     +    EK+F    R Y   + 
Sbjct: 291 RSGIWDEVIIEKSDKLL-YSGVKAPEISDKISYSEEKHFCTTFRHYLKRNT 340


>gi|121595493|ref|YP_987389.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Acidovorax sp. JS42]
 gi|120607573|gb|ABM43313.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Acidovorax sp. JS42]
          Length = 366

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 113/356 (31%), Positives = 171/356 (48%), Gaps = 15/356 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GE 65
            +  AL  +   + L++ NP V C+I   +G ++G+G T   G  HAEV AL +A   G 
Sbjct: 3   HIDQALGLAAQALFLSNPNPRVGCVITDVNGNMLGQGFTQRAGASHAEVMALRDAAARGC 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           + RGATAYVTLEPC+H GR+ PC   +I+ GI  VV  + DP+  V+G+G   L   G+ 
Sbjct: 63  DVRGATAYVTLEPCAHQGRTGPCCDALIQAGIAHVVASIADPNPLVAGQGFARLRAAGVQ 122

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +      ++ +     + +R V     + +K A S D +  +A   S  IT   ++   H
Sbjct: 123 VEVGPGGTQSRELNIGFFSRMVRGIPWVRMKAAASLDGVTALANGTSQWITSPAARADGH 182

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             RA++ A+L G+GTVLADDP L  R        P  +I+D   +   ++++   A    
Sbjct: 183 AWRARACAVLTGVGTVLADDPRLDVR-EIATPRQPHLVIVDSLLQTPANARLFDVADR-R 240

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAH 300
           V+I T   D   A A R +   II         DL  LL  L   GV  L +E G  +  
Sbjct: 241 VLIYTARPDAAGAAALRARGATIIELPNDQGKVDLPALLRNLAREGVNELHLEAGHKLNG 300

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCL 352
           SF+   LVD ++LY + I++G+G        PL+                G D+ +
Sbjct: 301 SFLREGLVDELLLYLAPIMLGQGAQGLSNWGPLQTLADGIPMQFQAVQQVGPDLRV 356


>gi|305667257|ref|YP_003863544.1| putative riboflavin biosynthesis protein [Maribacter sp. HTCC2170]
 gi|88709304|gb|EAR01537.1| putative riboflavin biosynthesis protein [Maribacter sp. HTCC2170]
          Length = 350

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 108/359 (30%), Positives = 172/359 (47%), Gaps = 22/359 (6%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           S D  +M  AL  ++  +G T+ NP V  ++V +  +I  G T+  G  HAEV A+    
Sbjct: 2   SLDHLYMQRALLLAKNGLGTTAPNPMVGAVLVCNEKIIAEGYTSPYGGAHAEVNAINSVE 61

Query: 65  EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           ++     +T YVTLEPCSH+G++PPCA  II+  I RVV+   D   +V+G+G + L + 
Sbjct: 62  DKSILANSTLYVTLEPCSHHGKTPPCADLIIKHNIPRVVIGTLDSHEKVAGKGKRMLEES 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM------AGCGSVPIT 175
           G  +   ++E+  K     +LT    KR +I LK A + D  I        A      IT
Sbjct: 122 GCKVTLGVLENACKEHHKRFLTFHQRKRPYIILKWAQTSDGFIAPDKNKRKAKAEPYWIT 181

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
              S+  VH  R++  AILVG  TVL D+P+L  R       SP+RI++D    +  +  
Sbjct: 182 NSYSRQIVHKWRSEEQAILVGTKTVLDDNPKLNTR--SWAGTSPIRIVMDKKLNIGSNHH 239

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
           ++  +  +P I++T+N D     A       +I        ++  +L  R + S+L+EGG
Sbjct: 240 VLDVS--SPTIVITQNTDEDKRAANIAY--EVIDFSKNQTTQICQVLYKRNIISVLIEGG 295

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           A    +FI+  L D   ++       + G+ +P        N    +     SD+   Y
Sbjct: 296 AKTLQTFIDENLWDEARVFTG-KNNFKKGLKAP------RMNKEAFKSITIESDILNIY 347


>gi|282866177|ref|ZP_06275224.1| riboflavin biosynthesis protein RibD [Streptomyces sp. ACTE]
 gi|282558961|gb|EFB64516.1| riboflavin biosynthesis protein RibD [Streptomyces sp. ACTE]
          Length = 366

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 116/362 (32%), Positives = 181/362 (50%), Gaps = 14/362 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE 62
           ++ D   M  A+  +   +G TS NP V C+++   G   G G     G PHAE+ AL E
Sbjct: 3   TTADITAMRRAIALAARGLGATSPNPVVGCVVLDAAGQPAGEGFHRRAGGPHAEIHALRE 62

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARG TAYVTLEPC+H GR+ PCAQ +++ GIRRVV  V DP+ + +G      ++ 
Sbjct: 63  AGERARGGTAYVTLEPCNHTGRTGPCAQALLDAGIRRVVYAVGDPNPQATGGADTLRAEG 122

Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
             +   ++  E +    A+LT     R ++  K A + D  +  A   S  IT   S+  
Sbjct: 123 VQVEQGLLADEAETGNTAWLTSVRLGRPYVLWKYAATLDGRVAAADATSRWITSAESRAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTAL 241
           VH LRA++DA++VG GT  ADDP+L  R        P+R+++D     +   ++++  + 
Sbjct: 183 VHRLRAEADAVVVGSGTARADDPQLGVR-GIDGAVQPLRVVVDTGATAVKPGARVLDGS- 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVA 299
            AP ++    D     L            D R  D+  LL  L  RGV S+L+EGG  +A
Sbjct: 241 -APTLVAVAEDADASHLPKDAVLRLPRAADGRGLDVPALLAALHARGVRSVLLEGGPVLA 299

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEY 354
            SF+ +  VD+++ Y + +++G G  P+ L +  +                 G D+ +  
Sbjct: 300 GSFVAAGTVDTVVGYLAPVLLGAG--PAALADAGITTLSQALRLAVTETVRIGPDLRVTA 357

Query: 355 IG 356
           + 
Sbjct: 358 VP 359


>gi|114765495|ref|ZP_01444605.1| riboflavin biosynthesis protein RibD [Pelagibaca bermudensis
           HTCC2601]
 gi|114542205|gb|EAU45236.1| riboflavin biosynthesis protein RibD [Roseovarius sp. HTCC2601]
          Length = 350

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 131/345 (37%), Positives = 184/345 (53%), Gaps = 11/345 (3%)

Query: 22  VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           +G    NP+V C+IVKDG V+GRG TA GG PHAE QAL +AGE ARGATAYVTLEPCSH
Sbjct: 1   MGQCWPNPAVGCVIVKDGRVVGRGATAPGGRPHAEPQALAQAGEAARGATAYVTLEPCSH 60

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH-A 140
           +G++PPCA+ +++ G+ RVV  + D D RVSG+G   L + GI V   + +E     H  
Sbjct: 61  HGKTPPCAEALVKSGVARVVAPLADNDARVSGQGFAHLRKHGIEVTTGVLAEDAARDHAG 120

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +  R    R  +TLK+A S D  I  A   S  ITG  ++  VH LRA  DA++VG GT 
Sbjct: 121 FFLRNDHGRPLVTLKLANSFDGRIATATGESQWITGPEARRYVHGLRASHDAVMVGAGTA 180

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL-ALA 259
            ADDP LT R  G +   P+R+I+     + L S +  +A   PV +   +D   +   A
Sbjct: 181 RADDPALTVRGWG-EVQQPVRVIVSRLIDVPLMSTLASSAREVPVWLAHGSDAASMTKRA 239

Query: 260 FRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
           ++     ++ C       D   LL+ L   G+T +  EGG  +A S + + LVD ++ + 
Sbjct: 240 WQSCGAKLLQCKVSGGRIDPHALLSALGKEGLTRVFCEGGGQLAASLLAADLVDELVGFT 299

Query: 316 SQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
           + I +G  G P      ++       F        G DV   +  
Sbjct: 300 AGIAVGAEGRPGIGAMGVDRLAEAPRFELEEVRAVGGDVLHRWRR 344


>gi|326335510|ref|ZP_08201697.1| riboflavin biosynthesis protein RibD [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325692276|gb|EGD34228.1| riboflavin biosynthesis protein RibD [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 360

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 114/357 (31%), Positives = 169/357 (47%), Gaps = 25/357 (7%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D ++M   L  +R  +G T  NP V  +IV  G +IG G     G PHAEV A+    +
Sbjct: 5   IDEKYMQRCLFLARKAMGYTYPNPLVGSVIVHQGKIIGEGWHTKAGEPHAEVNAITSVRD 64

Query: 66  E--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           +   + +T YV LEPC H+G++PPCA  IIE GI R+V+   D   +V+G+G+Q L Q G
Sbjct: 65  KSLLKESTLYVNLEPCVHFGKTPPCADLIIEKGIPRIVIGCTDIYSKVAGKGIQRLQQAG 124

Query: 124 -IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG---MAGCGSVPITGFIS 179
             +V  ++E E +     + T   +KR +I LK A ++D  I          V IT   S
Sbjct: 125 REVVLDVLEQESQALNIRFFTFHSQKRPYIILKWAQTRDGFIAPQQRKNKAPVWITNDFS 184

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   HL RAQ  AILVG  TV+ D+P LT R      ++P+RI++D    L     + + 
Sbjct: 185 QQLTHLWRAQEGAILVGKSTVVQDNPSLTTRY--WVGNTPLRIVIDASHSLPDSLAVFQ- 241

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAA 297
               P ++ T  +           N++ +  +      K++   L  + V SL+VEGG  
Sbjct: 242 --KMPTVVFTSKE------MTDTFNVSFVPFNPSFSMPKQVCNYLYEKNVQSLIVEGGTQ 293

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           V   FIN RL D   ++         G+ +PL +         V R     D    Y
Sbjct: 294 VLQQFINERLWDEARIFIGNKRF-SEGVKAPLLQDG-----NLVERQDIQGDSLFVY 344


>gi|150010266|ref|YP_001305009.1| riboflavin biosynthesis protein ribD [Parabacteroides distasonis
           ATCC 8503]
 gi|149938690|gb|ABR45387.1| riboflavin biosynthesis protein ribD [Parabacteroides distasonis
           ATCC 8503]
          Length = 359

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 105/338 (31%), Positives = 174/338 (51%), Gaps = 20/338 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   + ++M+  +  ++   G  S NP V  ++V  G +IG G     G  HAEV A+  
Sbjct: 1   MVEVEEKYMARCIELAKGGRGNVSPNPMVGAVVVHKGRIIGEGFHRKCGEAHAEVNAIAS 60

Query: 63  AGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             +E   + +T YV+LEPCSHYG++PPCA+ II  GI RVVV   DP   VSGRG++ L 
Sbjct: 61  VKDESLLKDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGCLDPFPEVSGRGVRMLR 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP----IT 175
           + G+ +V  +ME E +    A++T Q + R +I LK A S+D  I             ++
Sbjct: 121 EAGVEVVTGVMEEEARALNKAFMTLQTKGRPYIILKWAQSEDGFIDRLRMDVSEPVTVLS 180

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
              +   VH LR++  AI+VG  T L D+P L  R      +SP+R++LD    +    +
Sbjct: 181 SPETSRLVHKLRSEVAAIMVGTRTALLDNPSLNVR--HWSGNSPVRVVLDRRLVIPDSYR 238

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLVE 293
           ++  +  +  +I TE +         ++N+  I  D      +++L  L  R + SLLVE
Sbjct: 239 LLNGS--SRTLIFTEKE------VENRENVEYIRIDFEGPVIRQVLDHLAVRKLDSLLVE 290

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           GG  + +SF+ + + D   +  + + +   G+ +P+  
Sbjct: 291 GGTQLINSFVEADVWDEARVETAPVRL-YQGVHTPMLG 327


>gi|325977849|ref|YP_004287565.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|325177777|emb|CBZ47821.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 351

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 123/359 (34%), Positives = 181/359 (50%), Gaps = 21/359 (5%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAGE 65
             +M+ A+  ++     T TNP V  +IVK+G VI RG     G  HAE  A+   EA E
Sbjct: 3   ENYMAQAIAEAKKGFRQTYTNPLVGAVIVKNGRVIARGAHLQYGHEHAEKNAILYCEAPE 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           E   +T YVTLEPC H G+ PPC Q I+E GI++VVV   DP+  V+G+GL++L  +GI 
Sbjct: 63  ELANSTLYVTLEPCHHTGKQPPCTQAIVEAGIKKVVVGQLDPNPLVAGKGLEFLKSQGIE 122

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V +++E+E +     Y      KR ++ LK AVS D  I +       +T   +   VH
Sbjct: 123 VVTQVLENEARALNPHYNFYHEHKRPYVVLKQAVSLDGKIAVL-GKRTALTDDETNRFVH 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALL 242
             R    AILVG  TVL D+P+L     G   + P+R+ILD   ++    + +I K    
Sbjct: 182 DERDDYQAILVGADTVLIDNPQLF--GAGTSLYPPVRVILDETGRIFDKRELQIFKNQS- 238

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           APV I +        +A    +I +I      +  +L  L  + + S+ VEGGA V  +F
Sbjct: 239 APVYIFSR-----RQVANLPAHITVIALSNFSIANILQALYEKKIQSVYVEGGAQVHDAF 293

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           + S L D +I Y +  VIG  G  +      +E+ +          D  ++ IG NL L
Sbjct: 294 LASDLWDELISYVTPKVIGGNGRAAIASSRQVEQVYDL-------QDFSVQTIGTNLRL 345


>gi|306830959|ref|ZP_07464121.1| riboflavin biosynthesis protein RibD [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|304426982|gb|EFM30092.1| riboflavin biosynthesis protein RibD [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
          Length = 351

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 123/359 (34%), Positives = 181/359 (50%), Gaps = 21/359 (5%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAGE 65
             +M+ A+  ++     T TNP V  +IVK+G VI RG     G  HAE  A+   EA E
Sbjct: 3   ENYMAQAIAEAKKGFRQTYTNPLVGAVIVKNGRVIARGAHLQYGHEHAEKNAILYCEAPE 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           E   +T YVTLEPC H G+ PPC Q I+E GI++VVV   DP+  V+G+GL++L  +GI 
Sbjct: 63  ELANSTLYVTLEPCHHTGKQPPCTQAIVEAGIKKVVVGQLDPNPLVAGKGLEFLKSQGIE 122

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V +++E+E +     Y      KR ++ LK AVS D  I +       +T   +   VH
Sbjct: 123 VVTQVLENEARALNPHYNFYHEHKRPYVVLKQAVSLDGKIAVL-GKRTALTDDETNRFVH 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALL 242
             R    AILVG  TVL D+P+L     G   + P+R+ILD   ++    + +I K    
Sbjct: 182 DERDDYQAILVGADTVLIDNPQLF--GAGTSLYPPVRVILDETGRIFGKRELQIFKNQS- 238

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           APV I +        +A    +I +I      +  +L  L  + + S+ VEGGA V  +F
Sbjct: 239 APVYIFSR-----RQVANLPAHITVIALSNFSIANILQALYEKKIQSVYVEGGAQVHDAF 293

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           + S L D +I Y +  VIG  G  +      +E+ +          D  ++ IG NL L
Sbjct: 294 LASDLWDELISYVTPKVIGGNGRAAIASSRQVEQVYDL-------QDFSVQTIGTNLRL 345


>gi|187735315|ref|YP_001877427.1| riboflavin biosynthesis protein RibD [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425367|gb|ACD04646.1| riboflavin biosynthesis protein RibD [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 356

 Score =  292 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 109/371 (29%), Positives = 170/371 (45%), Gaps = 41/371 (11%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-- 62
           + D  +M+ A++ +   +GLTS NP V  +IV +  VIG G     G PHAE +A+ +  
Sbjct: 10  NQDDCWMNMAIKLASNGIGLTSPNPCVGAVIVHENQVIGSGFHKKAGLPHAEREAIADGV 69

Query: 63  AGEEA---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   A     +T YVTLEPCS  G++PPC   I++   +RVV   +DP+ +  G     L
Sbjct: 70  ANGNAPLFADSTLYVTLEPCSTSGKTPPCTDAILKYRFKRVVYGSEDPNPKHRGAAADIL 129

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            Q GI +   ++E E    +  +    +E R  +  K A+S D  I  +   S  +T   
Sbjct: 130 EQAGIKVTRGVLEKECDRLIRRFRVNMLEGRPWVIAKSAMSLDGRISRSPERSQWLTNEK 189

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ----EHSPMRIILDPHF-KLSLD 233
           S++ VH LRA+ DA+L G  TV  D+P LT R         +  P RIIL      +  D
Sbjct: 190 SRSFVHTLRAECDAVLTGGNTVRLDNPSLTIRKPDRPVSPLKEQPWRIILTHDASSIPAD 249

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLV 292
           S  +        ++V              +N+           +LL  L   + + ++L+
Sbjct: 250 SICLTDEFRDRTLVV--------------ENVFSYL-------ELLKKLYNDKKIGTILL 288

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSD 349
           E G  +   F+ + LVD  + + + I+IG G     P P  E   E +      + FG D
Sbjct: 289 EAGGCLVREFLKAGLVDEWVGFYAPIIIGGGADGVAPGPFLEH--EAHLEQPVVNIFGGD 346

Query: 350 VCLEYIGKNLC 360
           VC+     ++C
Sbjct: 347 VCIRG---DIC 354


>gi|73662304|ref|YP_301085.1| riboflavin specific deaminase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72494819|dbj|BAE18140.1| riboflavin specific deaminase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 347

 Score =  292 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 101/354 (28%), Positives = 170/354 (48%), Gaps = 14/354 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           ++++ A++ ++   G T  NP V  ++V  G ++G G     G  HAEVQAL+ A + A+
Sbjct: 3   QYLNYAIQLAQMVEGQTGLNPPVGAVVVNRGRIVGIGAHLKKGDKHAEVQALDMAKDNAK 62

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           G T Y++LEPC+H+G +PPC   IIE GI RVV  V   D  +   G   L + GI V+ 
Sbjct: 63  GGTIYISLEPCTHFGSTPPCVNKIIEAGINRVVYAV--KDTTLPSNGDSILQEAGIDVEF 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
             + + +     +   + +    +T+K++ S D         S  IT  + K  V  LR 
Sbjct: 121 RHQPDAENLYKDFFITKRQSVPMVTVKVSCSLDGKQATDTGESKWITNKLVKKDVFKLRH 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
             DA+L G GT+ AD+P+ T R+   +  +P+++IL  +  +  +  I K     P+ I 
Sbjct: 181 HHDAVLTGSGTLNADNPQYTTRIE--EGKNPIKVILAQNGNIDFNLDIFKNTN-TPIWIY 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           T+N+  V  +    +++ II      ++ ++  L  +G+  LLVE G  V   F+ S   
Sbjct: 238 TQNEALVTDI----EHVEIIQLTNCSVENIMKNLYEKGIGRLLVEAGPTVTSEFLQSNYT 293

Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGK 357
           + +I+Y +  +IG  G         +        F  V       ++ LE   K
Sbjct: 294 NKLIIYYAPKIIGGSGKYQFFHTDKIIDLSEVPQFEIVDSQMLEQNLKLELRKK 347


>gi|91216505|ref|ZP_01253471.1| riboflavin biosynthesis protein ribD [Psychroflexus torquis ATCC
           700755]
 gi|91185299|gb|EAS71676.1| riboflavin biosynthesis protein ribD [Psychroflexus torquis ATCC
           700755]
          Length = 347

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 98/350 (28%), Positives = 169/350 (48%), Gaps = 15/350 (4%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
             ++   L  +   +G T  NP V C+IV +  +IG G     G  HAEV+A+    ++ 
Sbjct: 5   EFYIKRCLELAANGLGTTYPNPLVGCVIVYNDRIIGEGWHIKAGDDHAEVRAINSVKDQS 64

Query: 67  -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-QWLSQKGI 124
             + +  YVTLEPCSHYG++PPC+  IIE  I ++V+   DP  +V+G G+ + L+ K  
Sbjct: 65  LLKKSILYVTLEPCSHYGKTPPCSDLIIEKKIPKIVIGTLDPFAKVAGMGIKKLLAAKRS 124

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG---CGSVPITGFISKN 181
           +   + E   +     + T   ++R  + LK A +    I            IT   S+ 
Sbjct: 125 VTVGVCEEACEELNKRFFTFHRKQRPFVILKWAETTHGFIAPTEQQKGDIFWITNAYSQQ 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH  R++  AILVG  T L D+P+L  R    +  +P R+++D   KL     ++ T+ 
Sbjct: 185 LVHKWRSEEQAILVGTQTALKDNPKLNVR--HYEGKNPTRVVIDRALKLPSSLALVDTSQ 242

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
             P II    D  +   +    +   +  +    +++L+ L  +G+ S+++EGGA    S
Sbjct: 243 --PTIIFH--DHKLTKASQYNLSFEALDFERNLPEQILSSLYEKGLQSVIIEGGAMTIQS 298

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN--FMCVRRDYFGSD 349
           FI+  L D   ++  +  I + G+  P+ +    +N      + +YF +D
Sbjct: 299 FIDHELWDEARVFIGKNEI-KDGLKGPVLKQKATRNEWLEGDQLNYFQND 347


>gi|297621291|ref|YP_003709428.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Waddlia chondrophila WSU 86-1044]
 gi|297376592|gb|ADI38422.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Waddlia chondrophila WSU 86-1044]
          Length = 339

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 122/355 (34%), Positives = 177/355 (49%), Gaps = 28/355 (7%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D R+M  A+            NP V C++VK+G ++G G     G PHAEV AL EAG+
Sbjct: 2   DDRRWMEMAIAEGLKGRLDAPPNPWVGCILVKNGQIVGLGHHPECGLPHAEVYALREAGQ 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            ARGATAYVTLEPC H GR+ PC   +IE G+ RVVV V+DPD +VSG G+  L   GI 
Sbjct: 62  NARGATAYVTLEPCVHTGRTLPCIHALIEAGVARVVVGVEDPDPKVSGSGIAALKIAGIK 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +     ++ L  YL  +   R  +  K A+S D     +   S  I+   ++   H
Sbjct: 122 VTVGVEREAVELSLAPYLHHRRTGRPFVIAKTALSIDGRAAASDKTSQWISCEAARRDAH 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
            +RA+S AIL+G GT + D P+LT R +N L +  P+R++LDP+ K+  DS +     LA
Sbjct: 182 EMRAESQAILIGAGTAVKDSPQLTVRQVNKLPKKQPLRVLLDPNGKVPHDSPLYDLD-LA 240

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P ++ +E  +P                       +L+IL  +GV  LL+EGG      F+
Sbjct: 241 PTLVFSEKMEPEK---------------------ILSILGEKGVIQLLIEGGPTTITQFL 279

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCLEY 354
              L+D +I+Y    ++G  G+P     G            +     G+ V   Y
Sbjct: 280 QQHLIDRLIVYTGPCLLGSDGLPGFGSMGICSMENALRLHLLESSAIGNSVKSVY 334


>gi|126663421|ref|ZP_01734418.1| riboflavin biosynthesis protein RibD [Flavobacteria bacterium
           BAL38]
 gi|126624369|gb|EAZ95060.1| riboflavin biosynthesis protein RibD [Flavobacteria bacterium
           BAL38]
          Length = 346

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 100/343 (29%), Positives = 164/343 (47%), Gaps = 14/343 (4%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
             ++   +  ++  +G T  NP V  +IV +  +IG G     G PHAEV A+    ++ 
Sbjct: 5   EFYIKRCIELAKNGLGTTYPNPLVGSVIVYENKIIGEGWHKKAGEPHAEVNAVNSVKDKS 64

Query: 67  -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
             + AT YV+LEPCSH+G++PPC   II   I  VVV   DP  +V+G G++ L + G  
Sbjct: 65  LLKEATIYVSLEPCSHFGKTPPCCDLIIVNEIPNVVVGTVDPFAKVAGNGIKKLVESGKK 124

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV---PITGFISKN 181
           +   ++E E       + T   ++R +I LK A + +  I            IT   S+ 
Sbjct: 125 VTVGILEDECNELNKRFFTFHQKQRPYIILKWAETANGFIAPISKEEKSPIWITNQYSRQ 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH  R +  AILVG  TVL D+P+L  R     E++P+R++LD   K+S +  +     
Sbjct: 185 LVHKWRTEEQAILVGTNTVLDDNPKLDAR--DFSENNPIRVVLDKSGKVSKNYHV--KDN 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
               I +TE+       +    N      D   ++ +  IL    + S+++EGG     S
Sbjct: 241 SQKTIFITES---EKYASTENCNYENTIFDVNLVRSICDILYKNNIQSIIIEGGTKTIQS 297

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           FI++ L D   ++R + +  + GI +P+  G     F  +  +
Sbjct: 298 FIDANLWDEAKVFRGKKIF-QNGIIAPIISGNPVARFEIMNDE 339


>gi|126462807|ref|YP_001043921.1| riboflavin biosynthesis protein RibD [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104471|gb|ABN77149.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 356

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 133/354 (37%), Positives = 195/354 (55%), Gaps = 11/354 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ ALR     +G T  NP+V C+IVK G V+GRG T  GG PHAE  AL +AG  A GA
Sbjct: 1   MAHALRLGARGLGRTWPNPAVGCVIVKAGRVVGRGWTRPGGRPHAEPVALAQAGAAALGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPCSH+GR+PPCA+ +I  G+ RVV    DPD RVSGRG   L + GI + +R+
Sbjct: 61  TAYVTLEPCSHHGRTPPCAEALIAAGLARVVTATGDPDPRVSGRGHAMLREAGIAVTERV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E+E +     +L R  E    +TLK+A + D  I  A   S  ITG +++  VH +R +
Sbjct: 121 LEAEARAAHAGFLKRVTEGLPFVTLKLAATVDGRIATASGESRWITGSLARRAVHAMRMR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DA++VG+GT +ADDP+L+ R  G   H P+RI++D   + + DS++ +TA   PV +  
Sbjct: 181 HDAVMVGVGTAIADDPDLSVRDLG-SGHQPVRIVVDSLLRHAPDSRLGRTARQVPVWLCH 239

Query: 250 ENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
               P  A A    +  I+       D  + + +L  L   G+T +  EGGA +  + + 
Sbjct: 240 GPAAPEAARAAWAASGAILLECPAGPDGLEAEAVLRRLAAEGLTRIFCEGGARLGAALVR 299

Query: 305 SRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           + L D ++ + +  +IGE G  +     L        +     D  G D+   +
Sbjct: 300 AGLCDELVTFTAGKLIGEEGRGAMGALRLARLAEAPAYRLASLDMVGGDLLARW 353


>gi|163852584|ref|YP_001640627.1| riboflavin biosynthesis protein RibD [Methylobacterium extorquens
           PA1]
 gi|163664189|gb|ABY31556.1| riboflavin biosynthesis protein RibD [Methylobacterium extorquens
           PA1]
          Length = 371

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 137/363 (37%), Positives = 190/363 (52%), Gaps = 11/363 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D R M  AL   R ++G T  NPSV  ++V +G ++G+ VTA GG PHAE  AL  AG
Sbjct: 8   ALDRRAMRLALALGRRNLGRTWPNPSVGAVVVAEGRIVGQAVTAVGGRPHAEPLALAMAG 67

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E A GAT YVTLEPCSH+GR+PPC    I  GI RVV  ++DPD RV+GRG   L   GI
Sbjct: 68  EAAHGATLYVTLEPCSHHGRTPPCTDATIAAGIARVVTAIEDPDPRVAGRGHAGLRAAGI 127

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++  E       + +R    R  + LK+A ++D     +    + ITG ++   V
Sbjct: 128 TVETGLLREEAARDHRGHFSRVTRGRPSLHLKLARTRDGFAAPSTGERLKITGSVADGAV 187

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           HL RA +DAI+VGIGT  ADDP LT RL GL E SP+RI+LD   +L+  S +++ A   
Sbjct: 188 HLWRAHADAIMVGIGTARADDPSLTVRLPGLAERSPLRIVLDSTLRLNPASHLVRGARDL 247

Query: 244 PVIIVTENDDPVLALAFRK------KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
           P +++T    P  A             + I      DL   L  L  RG+T +  EGG A
Sbjct: 248 PTLVLTGRGAPAHARRMLASFGVEIAFVPIDAAGRIDLPAALKALAERGLTRICSEGGPA 307

Query: 298 VAHSFINSRLVDSIILYRSQIVIGE-GGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLE 353
           +A +     L+D+  L    + +GE GG+P+    L     +     V    +G D  + 
Sbjct: 308 LADALAAHDLIDACTLITGSVTLGEAGGLPALGANLARRLADGLLSVVETRDYGPDTAVT 367

Query: 354 YIG 356
           Y  
Sbjct: 368 YER 370


>gi|260221154|emb|CBA29435.1| Riboflavin biosynthesis protein ribD [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 363

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 109/353 (30%), Positives = 160/353 (45%), Gaps = 20/353 (5%)

Query: 19  RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE---ARGATAYVT 75
           R      + NP+V C++ KD   +G G T   G PHAEV AL +A E+     GATAYVT
Sbjct: 2   RRCSYEANPNPNVYCVVFKDEYCLGLGHTQKAGGPHAEVMALRDAAEKGLSVVGATAYVT 61

Query: 76  LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES--- 132
           LEPCSH+GR+ PC   +I+ GI++VV    DP+  V+G G   L   G+ V+ +      
Sbjct: 62  LEPCSHHGRTGPCCDALIQAGIKKVVATNLDPNPLVAGNGFAKLRAAGVEVEVLPSEHPL 121

Query: 133 --EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
             E +     + +R + K   + +K+A S D    +    S  ITG  ++   H  RA+S
Sbjct: 122 AIESRELNIGFFSRMIRKTPWVRMKVAASLDGTTALDNGVSQWITGPAARADGHAWRARS 181

Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
            AIL GIGTVLAD P L  RL       P  +++D   +  LD+          +     
Sbjct: 182 CAILTGIGTVLADRPRLDVRLVE-TPRQPHLVVVDSKLETPLDAPFFIAGRAVFIYAAAP 240

Query: 251 NDDPVLALAFRKKNINII--------YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           ND    AL      + I+             DL  ++  L  R +  L VE G  +  S 
Sbjct: 241 NDAKRAALEAVGATVIIMPGIDANGQPTGKVDLAAMMQDLGRREINELHVEAGFKLNGSL 300

Query: 303 INSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCL 352
           +   LVD  ++Y +  ++G+G       PL E            +  G D+ +
Sbjct: 301 VREGLVDEFVVYVAPRLLGQGAGMFQLGPLTELSQGVELEFKSTEMLGPDLRV 353


>gi|184155252|ref|YP_001843592.1| riboflavin biosynthesis protein [Lactobacillus fermentum IFO 3956]
 gi|183226596|dbj|BAG27112.1| riboflavin biosynthesis protein [Lactobacillus fermentum IFO 3956]
          Length = 352

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 114/351 (32%), Positives = 162/351 (46%), Gaps = 9/351 (2%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-A 63
           S D +FM  AL  +      T  NP V  +IVKDG ++  G     G  HAE  A+ + +
Sbjct: 2   SSDEQFMQLALAEAAKGGSATWKNPQVGAVIVKDGQLLATGYHHQYGQAHAERDAISKLS 61

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            E+  GAT YVTLEPC HYG+ PPC+Q +I+    RVVV   DP   V G+G+  L   G
Sbjct: 62  NEQLAGATIYVTLEPCFHYGKQPPCSQLLIDSHFARVVVATIDPHQVVGGKGIAQLKAAG 121

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +   +++ + +     Y     ++R  IT K A+S D  +  A   +  IT   ++  
Sbjct: 122 IDVEVGLLKDQAEALNRHYFYFYRQQRPWITAKQALSLDGKVAAAPGQATAITNQAARRL 181

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTAL 241
           VH  RA   AI+VG GTVLADDP L C    L    P+R+ILD   + L    + + T  
Sbjct: 182 VHQERADYHAIVVGAGTVLADDPRLLCETPQL--FPPVRVILDRAGRLLDYQDRFVFTDA 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            AP  +VT N            ++ +      D  +LL       + SL VEGG AV   
Sbjct: 240 SAPTWLVTTNRAATKVDW--PAHVTVKLLQNGDWPELLDYFKEAELQSLYVEGGPAVLTE 297

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
              +  V+ +I Y    +IG+ G+               V     G D+ +
Sbjct: 298 LFQAVPVNQLITYLDPQIIGDQGLAGAQFPAGTAFTHRTV--TQLGDDIRI 346


>gi|77463964|ref|YP_353468.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Rhodobacter sphaeroides 2.4.1]
 gi|77388382|gb|ABA79567.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Rhodobacter sphaeroides 2.4.1]
          Length = 356

 Score =  292 bits (747), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 132/354 (37%), Positives = 194/354 (54%), Gaps = 11/354 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ ALR     +G T  NP+V C+IVK G V+GRG T  GG PHAE  AL +AG  A GA
Sbjct: 1   MAHALRLGARGLGRTWPNPAVGCVIVKAGRVVGRGWTCPGGRPHAEPVALAQAGAAALGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPCSH+GR+PPCA+ +I  G+ RVV    DPD RVSGRG   L + GI + +R+
Sbjct: 61  TAYVTLEPCSHHGRTPPCAEALIAAGLARVVTATGDPDPRVSGRGHAMLREAGIAVTERV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E+E +     +  R  E    +TLK+A + D  I  A   S  ITG +++  VH +R +
Sbjct: 121 LEAEARTAHAGFQKRVTEGLPFVTLKLAATLDGRIATASGESRWITGSLARRAVHAMRMR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DA++VG+GT +ADDP+L+ R  G   H P+RI++D   + + DS++ +TA   PV +  
Sbjct: 181 HDAVMVGVGTAIADDPDLSVRDLG-SGHQPVRIVVDSLLRHAPDSRLGRTARQVPVWLCH 239

Query: 250 ENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
               P  A A    +  I+       D  + + +L  L   G+T +  EGGA +  + + 
Sbjct: 240 GPAAPEAARAAWAASGAILLECPAGPDGLEAEAVLRRLAAEGLTRIFCEGGARLGAALVR 299

Query: 305 SRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           + L D ++ + +  +IGE G  +     L        +     D  G D+   +
Sbjct: 300 AGLCDELVTFTAGKLIGEEGRGAMGALRLARLAEAPAYRLASLDTVGGDLLARW 353


>gi|262382448|ref|ZP_06075585.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 2_1_33B]
 gi|262295326|gb|EEY83257.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 2_1_33B]
          Length = 345

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 105/338 (31%), Positives = 175/338 (51%), Gaps = 20/338 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   + ++M+  +  ++   G  S NP V  ++V  G +IG G     G  HAEV A+  
Sbjct: 1   MIEVEEKYMARCIELAKGGRGNVSPNPMVGAVVVHKGRIIGEGFHRKCGEAHAEVNAIAS 60

Query: 63  AGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             +E   + +T YV+LEPCSHYG++PPCA+ II  GI RVVV   DP   VSGRG++ L 
Sbjct: 61  VKDESLLKDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGCLDPFPEVSGRGVRMLR 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP----IT 175
           + G+ +V  +ME E ++   A++T Q + R +I LK A S+D  I             ++
Sbjct: 121 EAGVEVVTGVMEEEARVLNKAFMTLQTKGRPYIILKWAQSEDGFIDRLRTDVSEPVTVLS 180

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
              +   VH LR++  AI+VG  T L D+P L  R      +SP+R++LD    +    +
Sbjct: 181 SPETSRLVHKLRSEVAAIMVGTRTALLDNPSLNVR--HWSGNSPVRVVLDRRLVIPDSYR 238

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLVE 293
           ++  +  +  +I TE +         ++N+  I  D      +++L  L  R + SLLVE
Sbjct: 239 LLNGS--SRTLIFTEKE------VENRENVEYIRIDFEGPVIRQVLDHLAVRKLDSLLVE 290

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           GG  + +SF+ + + D   +  + + +   G+ +P+  
Sbjct: 291 GGTQLINSFVEADVWDEARVETAPVRL-YQGVHAPMLG 327


>gi|119899093|ref|YP_934306.1| AMP deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Azoarcus sp. BH72]
 gi|119671506|emb|CAL95419.1| AMP deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Azoarcus sp. BH72]
          Length = 363

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 116/339 (34%), Positives = 174/339 (51%), Gaps = 13/339 (3%)

Query: 20  WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPC 79
             +  T+ NP V C++V+DG ++G G     G  HAEV AL  AGE A GATAYVTLEPC
Sbjct: 20  NGLCTTTPNPRVGCVLVRDGEIVGEGWHQRAGEAHAEVHALRAAGERAAGATAYVTLEPC 79

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DRMMESEGKIFL 138
           SH+GR+PPC + ++  G+RRVV  ++DP+  V+G GL  L   GI     ++ESE +   
Sbjct: 80  SHFGRTPPCCEALVAAGVRRVVAAMEDPNPLVAGSGLARLRAAGIDTAHGLLESEARELN 139

Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIG 198
             +++R    R  + LK A + D    +A   S  ITG  +++  H  RA++ AIL GIG
Sbjct: 140 IGFISRMTRGRPWVRLKAAATLDGKTALANGVSQWITGEAARSDGHRWRARACAILTGIG 199

Query: 199 TVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           TV  DDP+LT R     E  P+R+++D   ++  +++I++    APV+I T  ++   A 
Sbjct: 200 TVREDDPQLTVR-GVPCERQPLRVVVDARLEIGREARILQG---APVLIATAIEEGERAA 255

Query: 259 AFRKKNINII----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
             R     ++          L  LL  L  RG+  L VE G  +  S +    VD ++LY
Sbjct: 256 ELRAAGHEVLSLANEAGKVALPALLQALAARGINELHVEAGFKLNGSLLREGCVDELLLY 315

Query: 315 RSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
            + +++G+        S L                 G D
Sbjct: 316 MAPMLVGDSAQGMFNLSALTSLDQALRLDIRDMRRIGED 354


>gi|237725969|ref|ZP_04556450.1| riboflavin biosynthesis protein ribD [Bacteroides sp. D4]
 gi|229435777|gb|EEO45854.1| riboflavin biosynthesis protein ribD [Bacteroides dorei 5_1_36/D4]
          Length = 355

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 107/350 (30%), Positives = 178/350 (50%), Gaps = 17/350 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D +++S  L+ +   +  T+ NP V  +IV    +IG G     G  HAEV A+    +E
Sbjct: 4   DEKYISRCLQLAHNGLCNTAPNPMVGAVIVYHDTIIGEGYHIRCGEAHAEVNAIRSVKDE 63

Query: 67  --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
              + +T YV+LEPCSHYG++PPCA  IIE  I +VV+   DP   V+GRG++ L + GI
Sbjct: 64  NLLKESTIYVSLEPCSHYGKTPPCADLIIEKKIPKVVIGCMDPFSLVAGRGIEKLRKAGI 123

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM--IGMAGCGSVPITGFISKN 181
            +   ++E E +  +  ++T    KR +ITLK A S D    I   G   + ++  ++  
Sbjct: 124 EVTVGVLEEECRHLIRRFITFNTLKRPYITLKWAESTDGFIDINRTGGKPIKLSNPLTSM 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH  RA+ DAILVG  T L D+P L+ R        P+R+++D    L  D ++   + 
Sbjct: 184 LVHKKRAEHDAILVGRRTALLDNPSLSTR--NWYGKHPVRLVIDKELTLPRDLELF--SG 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
                + T              +++        L +++ +L  + + SLLVEGG+ +  S
Sbjct: 240 RIKTFVFTRKSPHQPNTLTEYISLD---FSKDILPQIMEVLYQKKIQSLLVEGGSILLQS 296

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           FI+S L D   + +  + + + GI +P     ++K +  + + YFG ++ 
Sbjct: 297 FIDSSLWDEAFIEKVPLCL-KNGIEAP----SIQKKYFKLNKIYFGREIM 341


>gi|212695385|ref|ZP_03303513.1| hypothetical protein BACDOR_04934 [Bacteroides dorei DSM 17855]
 gi|237711578|ref|ZP_04542059.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 9_1_42FAA]
 gi|265753006|ref|ZP_06088575.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_1_33FAA]
 gi|212662020|gb|EEB22594.1| hypothetical protein BACDOR_04934 [Bacteroides dorei DSM 17855]
 gi|229454273|gb|EEO59994.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 9_1_42FAA]
 gi|263236192|gb|EEZ21687.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_1_33FAA]
          Length = 355

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 107/350 (30%), Positives = 178/350 (50%), Gaps = 17/350 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D +++S  L+ +   +  T+ NP V  +IV    +IG G     G  HAEV A+    +E
Sbjct: 4   DEKYISRCLQLAHNGLCNTAPNPMVGAVIVYHDTIIGEGYHIRCGEAHAEVNAIRSVKDE 63

Query: 67  --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
              + +T YV+LEPCSHYG++PPCA  IIE  I +VV+   DP   V+GRG++ L + GI
Sbjct: 64  NLLKESTIYVSLEPCSHYGKTPPCADLIIEKKIPKVVIGCMDPFSLVAGRGIEKLRKAGI 123

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM--IGMAGCGSVPITGFISKN 181
            +   ++E E +  +  ++T    KR +ITLK A S D    I   G   + ++  ++  
Sbjct: 124 EVTVGVLEEECRHLIRRFITFNTLKRPYITLKWAESTDGFIDINRTGGKPIKLSNPLTSM 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH  RA+ DAILVG  T L D+P L+ R        P+R+++D    L  D ++   + 
Sbjct: 184 LVHKKRAEHDAILVGRRTALLDNPSLSTR--NWYGKHPVRLVIDKELTLPRDLELF--SG 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
                + T              +++        L +++ +L  + + SLLVEGG+ +  S
Sbjct: 240 RIKTFVFTRKSPHQPNTLTEYISLD---FSKDILPQIMEVLYQKKIQSLLVEGGSILLQS 296

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           FI+S L D   + +  + + + GI +P     ++K +  + + YFG ++ 
Sbjct: 297 FIDSSLWDEAFIEKVPLCL-KNGIEAP----SIQKKYFKLNKIYFGREIM 341


>gi|197123236|ref|YP_002135187.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter sp. K]
 gi|196173085|gb|ACG74058.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter sp. K]
          Length = 392

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 126/355 (35%), Positives = 182/355 (51%), Gaps = 7/355 (1%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            RFM  A+R +   +G TS NP+V  ++V+DG V+GRG  A  G PHAEV AL  AG  A
Sbjct: 26  ERFMRLAVREAARGLGRTSPNPAVGAVVVRDGRVVGRGHHARAGGPHAEVVALRAAGALA 85

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           RGA  Y TLEPC H+G++PPC+  ++E G+RRV V   DP+  V+GRG+  L + G+ +V
Sbjct: 86  RGADVYTTLEPCDHFGKTPPCSVALLEAGVRRVFVGSSDPNPLVNGRGMARLRRHGVAVV 145

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++ +E       + T   E R  +TLK AV+ D  I      +  ++G  ++  VH L
Sbjct: 146 KGVLRAECDRLNAPWFTFITEGRPFVTLKAAVTLDGRIATRTGDARWVSGEAARAWVHRL 205

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R + DA+LVG GT  ADDP LT RL       P+R++LD    L     + +    AP +
Sbjct: 206 RDRVDAVLVGAGTARADDPRLTTRLP-RGGRDPIRVVLDSDLSLPRTLALFRGGSPAPTL 264

Query: 247 IVTENDDPVLALAFRKKNINIIYC-DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           +   +  P        + +         DL+ LL  L  RGV  LLVEGGA V   F+ +
Sbjct: 265 VAHASAAPARRYGPGVELVRCRRGKGGVDLRDLLAKLAARGVAHLLVEGGAHVHARFLEA 324

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLEYIG 356
            LVD + ++ +  + G  G+P     G            V  +  G DV +  + 
Sbjct: 325 GLVDRVAVFVAPKIAGGDGVPLVAGRGPARMADALRLEQVAFERVGDDVLVTGVP 379


>gi|255535790|ref|YP_003096161.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Flavobacteriaceae bacterium 3519-10]
 gi|255341986|gb|ACU08099.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Flavobacteriaceae bacterium 3519-10]
          Length = 342

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 102/326 (31%), Positives = 165/326 (50%), Gaps = 15/326 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE- 65
           D  +M   +  ++  +G T  NP V  +IV DG +IG G     G PHAE+ A+    + 
Sbjct: 3   DELYMKRCIELAKKALGQTYPNPMVGSVIVHDGRIIGEGFHQKAGSPHAEINAINSVKDP 62

Query: 66  -EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
              R +T YV+LEPC+H+G++PPCA  + E G ++VV+ + D   +V+G+G Q L   GI
Sbjct: 63  SLLRDSTIYVSLEPCAHFGKTPPCADKLAEIGFKKVVIGILDSHDKVNGKGKQILENAGI 122

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +V  ++ +E       +   Q +KR  I LK A S D  I     G   I   ++K  V
Sbjct: 123 EVVTDVLRNECFDLNKRFFAFQEKKRPFILLKWAESADRFID-KDFGPTQIGNALTKQYV 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H LR++  AILVG  T L D+P LT R   +   +P+RI++D   K+     I  +   A
Sbjct: 182 HTLRSEEHAILVGTNTALTDNPSLTVR--EISGRNPVRILVDFDLKVPTSFNIYNSE--A 237

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK-LLTILVGRGVTSLLVEGGAAVAHSF 302
           P ++     + V      + +I+ I     +    L++ L  + + S++VEGG      F
Sbjct: 238 PTLVFNGVKNSV------EGHISFIKISKDNFPATLMSQLYEKQIQSVIVEGGRFTLQQF 291

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSP 328
           I++ L D  ++ R++ +    G  +P
Sbjct: 292 IDTDLWDETVIIRNENINLTNGTKAP 317


>gi|294811515|ref|ZP_06770158.1| putative riboflavin/cytosine deaminase [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324114|gb|EFG05757.1| putative riboflavin/cytosine deaminase [Streptomyces clavuligerus
           ATCC 27064]
          Length = 449

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 110/315 (34%), Positives = 157/315 (49%), Gaps = 7/315 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE 62
           ++ D   M  A+  +   +G TS NP V C+I    G + G G     G PHAEV AL  
Sbjct: 64  TAADIAAMRRAIELAARGLGSTSPNPVVGCVITDASGEIAGTGYHERAGGPHAEVHALRA 123

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  ARG TAYVTLEPC H GR+ PC+Q ++  GI RVV  V DP+   +  G   L   
Sbjct: 124 AGTRARGGTAYVTLEPCDHTGRTGPCSQALLAAGITRVVHAVADPNP-QASGGAGTLRAA 182

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +   ++  E +    A+LT     R  +  K A + D  I      S  IT   ++ 
Sbjct: 183 GVRVECGLLGPEAEAVNAAWLTSVRLGRPQVVWKYAATLDGRIAAEDRSSRWITSPEARA 242

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH LRA +DA+++G GT+  DDP+L  R        P+R++LD    ++  ++++  A 
Sbjct: 243 DVHRLRAGADAVVIGSGTLRTDDPQLAVR-GIEGAVQPLRVVLDSRATVTPAARVLDDA- 300

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVA 299
              +I V E  D           +       R  DL  LL  L  RGV S+L+EGG  +A
Sbjct: 301 APTLIAVGEGADTGHLPGVDTVVLPAAPGPGRGLDLHALLAELSARGVRSVLLEGGPTLA 360

Query: 300 HSFINSRLVDSIILY 314
            +F+ +R VD +I Y
Sbjct: 361 GAFVAARAVDKVIGY 375


>gi|255012465|ref|ZP_05284591.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 2_1_7]
          Length = 359

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 105/342 (30%), Positives = 175/342 (51%), Gaps = 16/342 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   + ++M+  +  ++   G  S NP V  ++V  G +IG G     G  HAEV A+  
Sbjct: 1   MVEVEEKYMARCIELAKGGRGNVSPNPMVGAVVVHKGRIIGEGFHRKCGEAHAEVNAIAS 60

Query: 63  AGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             +E   + +T YV+LEPCSHYG++PPCA+ II  GI RVVV   DP   VSGRG++ L 
Sbjct: 61  VKDESLLKDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGCLDPFPEVSGRGVRMLR 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP----IT 175
           + G+ +V  +ME E +    A++T Q + R +I LK A S+D  I       +     ++
Sbjct: 121 EAGVEVVTGVMEEEARALNKAFMTLQTKGRPYIILKWAQSEDGFIDRLRMDVLEPVTVLS 180

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
              +   VH LR++  AI+VG  T L D+P L  R      +SP+R++LD    +    +
Sbjct: 181 SPETSRLVHKLRSEVAAIMVGTRTALLDNPSLNVR--HWSGNSPVRVVLDRRLVIPDSYR 238

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
           ++  +L    +I TE +               I  +   ++++L  L  R + SLLVEGG
Sbjct: 239 LLDGSLR--TLIFTEKE----VENREDVEYIRIDFEGPVIRQVLDHLAVRKLDSLLVEGG 292

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
             + +SF+ + + D   +  + + +   G+ +P+ E  + + 
Sbjct: 293 TQLINSFVEADVWDEARVETAPVRL-YQGVHAPMLEKGVVRR 333


>gi|298374645|ref|ZP_06984603.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_1_19]
 gi|298269013|gb|EFI10668.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_1_19]
          Length = 359

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 105/338 (31%), Positives = 173/338 (51%), Gaps = 20/338 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   + ++M+  +  ++   G  S NP V  ++V  G +IG G     G  HAEV A+  
Sbjct: 1   MIEVEEKYMARCIELAKGGRGNVSPNPMVGAVVVHKGRIIGEGFHRKCGEAHAEVNAIAS 60

Query: 63  AGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             +E     +T YV+LEPCSHYG++PPCA+ II  GI RVVV   DP   VSGRG++ L 
Sbjct: 61  VKDESLLTDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGCLDPFPEVSGRGVRMLR 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP----IT 175
           + G+ +V  +ME E +    A++T Q + R +I LK A S+D  I             ++
Sbjct: 121 EAGVEVVTGVMEEEARALNKAFMTLQTKGRPYIILKWAQSEDGFIDRLRMDVSEPVTVLS 180

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
              +   VH LR++  AI+VG  T L D+P L  R      +SP+R++LD    +    +
Sbjct: 181 SPETSRLVHKLRSEVAAIMVGTRTALLDNPSLNVR--HWSGNSPVRVVLDRRLVIPDSYR 238

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLVE 293
           ++  +  +  +I TE +         ++N+  I  D      +++L  L  R + SLLVE
Sbjct: 239 LLNGS--SRTLIFTEKE------VENRENVEYIRIDFEGPVIRQVLDHLAVRKLDSLLVE 290

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           GG  + +SF+ + + D   +  + + +   G+ +P+  
Sbjct: 291 GGTQLINSFVEADVWDEARVETAPVRL-YQGVHAPMLG 327


>gi|228472970|ref|ZP_04057727.1| riboflavin biosynthesis protein RibD [Capnocytophaga gingivalis
           ATCC 33624]
 gi|228275552|gb|EEK14329.1| riboflavin biosynthesis protein RibD [Capnocytophaga gingivalis
           ATCC 33624]
          Length = 347

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 98/331 (29%), Positives = 158/331 (47%), Gaps = 16/331 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D R+M   L  +   +G T  NP V  +IV  G +IG G     G PHAEV A+    
Sbjct: 2   TIDQRYMQRCLSLAGKALGYTYPNPLVGSVIVHQGKIIGEGWHTKAGEPHAEVNAIASVK 61

Query: 65  EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           +    + +  YV LEPC+H+G++PPCA  IIE  I +VV+   D   +V+G+G++ L + 
Sbjct: 62  DSSLLKESVLYVNLEPCAHFGKTPPCADLIIEKEIPKVVIGCMDIFSKVAGKGIERLQKA 121

Query: 123 G-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV---PITGFI 178
           G  +V  ++E+E +     + T   + R +I LK A +++ +I            I+   
Sbjct: 122 GREVVVGVLENECQALNTRFFTFHSKGRPYIILKWAQTRNGLIAPLHQEQQAPVWISNEF 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           S+   HL RA+  AILVG  TV  D+P LT R       +P+R++++    L     + +
Sbjct: 182 SQQLTHLWRAEEGAILVGRTTVERDNPSLTVR--HWVGKNPLRLVIEGEHSLLDTFNVFQ 239

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
                P ++ +    P         +   +  D     ++   L  R + SL+VEGGA V
Sbjct: 240 GE---PTVVFSSKQSP----NTEHVSYQTLSSDLSMPNEVCNYLYDRQIQSLIVEGGAQV 292

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
              FI+  L D   ++  +      GI +PL
Sbjct: 293 LQQFISEGLWDEARIFVGKSQF-SEGIKAPL 322


>gi|217076388|ref|YP_002334104.1| riboflavin biosynthesis protein RibD [Thermosipho africanus TCF52B]
 gi|217036241|gb|ACJ74763.1| riboflavin biosynthesis protein RibD [Thermosipho africanus TCF52B]
          Length = 343

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 109/353 (30%), Positives = 166/353 (47%), Gaps = 19/353 (5%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            +FM  AL+ ++   G  S NP V  +IVKDG +I  G     G  HAE  A+  A    
Sbjct: 2   EKFMKLALKLAKKGTGRVSPNPLVGAVIVKDGKIISTGYHKRYGDFHAERNAILNAKTSL 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            G+T +V LEPC H+G++PPC   II+  I +V + + DP+  V+G+G+  L + GI V 
Sbjct: 62  EGSTLFVNLEPCCHHGKTPPCTDLIIKSKISQVFISILDPNPLVNGKGVDILRKNGIEVH 121

Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++E E       ++    +K  ++ LK+A++ D  I      S  IT     N  H L
Sbjct: 122 VGLLEKEASYLNRVFIKFITKKTPYVALKVAMTLDGFICDNLGKSKWITKNN-FNISHNL 180

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R    AI+VG  TVL D+P+LTCR  G    +P+RIILD   KL            +  I
Sbjct: 181 RNFFTAIMVGANTVLKDNPQLTCRNGG---RNPIRIILDYEGKL-AGKNFSVFDDQSRTI 236

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           + +            K N    Y + R  + +L  L    + S+L+EGGA+V   F    
Sbjct: 237 VFSSR--------CEKYNGAECYPETR-PEDILERLYSLNIDSVLIEGGASVLSQF--YD 285

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF--MCVRRDYFGSDVCLEYIGK 357
             D + L+ +  + G+G       E Y+++ F     +     ++  LE I  
Sbjct: 286 FSDELHLFYAPKIFGKGLSAFSGIEKYIDEEFDLKIKKIRRLKNEFYLEVIKN 338


>gi|332558836|ref|ZP_08413158.1| riboflavin biosynthesis protein RibD [Rhodobacter sphaeroides WS8N]
 gi|332276548|gb|EGJ21863.1| riboflavin biosynthesis protein RibD [Rhodobacter sphaeroides WS8N]
          Length = 356

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 133/354 (37%), Positives = 196/354 (55%), Gaps = 11/354 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ ALR     +G T  NP+V C+IVK G V+GRG T  GG PHAE  AL +AG  A GA
Sbjct: 1   MAHALRLGARGLGRTWPNPAVGCVIVKAGRVVGRGWTRPGGRPHAEPVALAQAGAAALGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPCSH+GR+PPCA+ +I  G+ RVV    DPD RVSGRG   L + GI + +R+
Sbjct: 61  TAYVTLEPCSHHGRTPPCAEALIAVGLARVVTATGDPDPRVSGRGHAMLREAGIAVTERV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E+E ++    +L R  E    +TLK+A + D  I  A   S  ITG +++  VH +R +
Sbjct: 121 LEAEARVAHAGFLKRVTEGLPFVTLKLAATLDGRIATASGESRWITGSLARRAVHAMRMR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DA++VG+GT +ADDP+L+ R  G   H P+RI++D   + + DS++ +TA   PV +  
Sbjct: 181 HDAVMVGVGTAIADDPDLSVRDLG-SGHQPVRIVVDSLLRHAPDSRLGRTARQVPVWLCH 239

Query: 250 ENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
               P  A A    +  I+       D  + + +L  L   G+T +  EGGA +  + + 
Sbjct: 240 GPAAPEAARAAWAASGAILLECPAGPDGLEAEAVLRRLAAEGLTRIFCEGGARLGAALVR 299

Query: 305 SRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           + L D ++ + +  +IGE G  +     L        +     D  G D+   +
Sbjct: 300 AGLCDELVTFTAGKLIGEEGRGAMGALRLARLAEAPAYRLASLDTVGGDLLARW 353


>gi|257869314|ref|ZP_05648967.1| riboflavin-specific deaminase [Enterococcus gallinarum EG2]
 gi|257803478|gb|EEV32300.1| riboflavin-specific deaminase [Enterococcus gallinarum EG2]
          Length = 359

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 104/357 (29%), Positives = 166/357 (46%), Gaps = 19/357 (5%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--GE 65
             +M  A+  +    G T TNP V  +IVKD  ++  G     G PHAE  A++     E
Sbjct: 3   ETYMKRAISEALKGKGQTFTNPLVGAVIVKDEEIVAVGSHMAYGQPHAEKNAIDSCSSPE 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +   +T YVTLEPC HYG+ PPC   I++ GI++VV+   DP+  VSG+G  +L  +G+ 
Sbjct: 63  KLIDSTIYVTLEPCHHYGKQPPCTTAILQSGIKKVVIGQLDPNPLVSGKGKAFLESQGVA 122

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           ++  ++E E +     Y T   E+R  + LK A + D  I +A      ITG  +  +V 
Sbjct: 123 VITGVLEKEVREINRHYNTYHEEQRPFVALKQATTLDGKIALA-GQRARITGEAALRRVR 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             R+   AIL+G  T L D+P L             R++LD   +       +     +P
Sbjct: 182 QERSDYQAILIGSRTALIDNPTLRTEAAFPTY----RVVLDRKGETLKQQLTLFEDTSSP 237

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           V++ T         +    ++NII      L  ++  L  R + S+ VEGG+++  +F+ 
Sbjct: 238 VLVFTTK----KVQSVFSNHVNIITTPSLTLSFVMKELYRRKIQSVYVEGGSSIHDAFLA 293

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
               D +I Y S  +IG  G  S      + + F           V +E +G+ L +
Sbjct: 294 DGYWDQVITYLSPKLIGGNGTASFASSREVNQMFALTE-------VTVEPVGEELRI 343


>gi|87161517|ref|YP_494408.1| riboflavin biosynthesis protein [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195585|ref|YP_500391.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|87127491|gb|ABD22005.1| riboflavin biosynthesis protein [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87203143|gb|ABD30953.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
           aureus NCTC 8325]
          Length = 334

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 111/341 (32%), Positives = 161/341 (47%), Gaps = 14/341 (4%)

Query: 22  VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
            G T  NP V  ++VK+G ++G G     G  HAEVQAL+ A + A GAT Y+TLEPCSH
Sbjct: 3   QGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAEGATIYITLEPCSH 62

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
           +G +PPC   II+C I +VV      D  +   G + L   GI V+ + +         +
Sbjct: 63  FGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDETLRAHGIEVECVDDERASQLYQDF 120

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
              + ++   IT+K++ S D         S  IT    K  V+ LR + DA+L G  TV 
Sbjct: 121 FKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRHDAVLTGRRTVE 180

Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
            DDP+ T R+      +P+++IL     +  + +I +     P+ I TEN +    L   
Sbjct: 181 LDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIYTENPN----LTTN 233

Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           + +I IIY    DL  +L  L  RGV +LLVE G      F+ S  +D  ILY +  +IG
Sbjct: 234 QTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDEFILYYAPKLIG 293

Query: 322 EGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
             G         + E      F  V  +    +V L    K
Sbjct: 294 GSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 334


>gi|288904903|ref|YP_003430125.1| riboflavin-specific deaminase [Streptococcus gallolyticus UCN34]
 gi|288731629|emb|CBI13184.1| riboflavin-specific deaminase [Streptococcus gallolyticus UCN34]
          Length = 351

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 122/359 (33%), Positives = 180/359 (50%), Gaps = 21/359 (5%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAGE 65
             +M+ A+  ++     T TNP V  +IVK+G VI RG     G  HAE  A+   EA E
Sbjct: 3   ENYMAQAIAEAKKGFRQTYTNPLVGAVIVKNGRVIARGAHLQYGHEHAEKNAILHCEAPE 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           E   +T YVTLEPC H G+ PPC Q I+E GI++VVV   DP+  V+G+GL++L  +GI 
Sbjct: 63  ELTNSTLYVTLEPCHHTGKQPPCTQAIVEAGIKKVVVGQLDPNPLVAGKGLEFLKSQGIE 122

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V +++E+E +     Y      KR ++ LK AVS D  I +       +T   +   VH
Sbjct: 123 VVTQVLENEARALNPHYNFYHEHKRPYVVLKQAVSLDGKIAVL-GKRTALTDDETNRFVH 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALL 242
             R    AILVG  TVL D+P+L     G   + P+R+ILD   ++    + +I K    
Sbjct: 182 DERDDYQAILVGADTVLIDNPQLL--GAGTTLYPPVRVILDEIGRIFDKRELQIFKNQS- 238

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           APV I +        +     +I +I      +  +L  L  + + S+ VEGGA V  +F
Sbjct: 239 APVYIFSR-----RQVTNLPAHITVIALSNFSIANILQALYEKKIQSVYVEGGAQVHDAF 293

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           + S L D +I Y +  VIG  G  +      +E+ +          D  ++ IG NL L
Sbjct: 294 LASDLWDELISYMTPKVIGGNGRAAIASSRQVEQVYDL-------QDFSVQTIGTNLRL 345


>gi|319892826|ref|YP_004149701.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5- phosphoribosylamino)uracil reductase
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317162522|gb|ADV06065.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5- phosphoribosylamino)uracil reductase
           [Staphylococcus pseudintermedius HKU10-03]
 gi|323464142|gb|ADX76295.1| riboflavin specific deaminase [Staphylococcus pseudintermedius
           ED99]
          Length = 348

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 116/355 (32%), Positives = 173/355 (48%), Gaps = 15/355 (4%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE-A 67
            ++  A++ +    G T TNP+V  +IVK G +IG G     G  HAE+QA++ AG +  
Sbjct: 3   HYLDYAIQLAEMTQGQTGTNPAVGAVIVKHGRIIGFGAHLKKGERHAEIQAIDMAGAKHV 62

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           +GAT YV+LEPCSHYG +PPCAQ II+ GI +VV      D  +       + Q GI V+
Sbjct: 63  KGATIYVSLEPCSHYGSTPPCAQRIIDTGIAKVVYAA--KDTTLQETSHDVMVQHGIEVE 120

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
                  +    A+   +      +T+K++ S D         S  IT    K  V  LR
Sbjct: 121 YRPHPRAEQLYAAFYRSKEGAVPIVTVKVSASIDGKQATDHFESQWITSKQVKADVFQLR 180

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
              DAI+ G GT+  D+P LT R+     H P ++IL    K++ D+++ +   + P+ I
Sbjct: 181 HSHDAIITGNGTLTHDNPSLTTRVE--DGHHPAKVILSRSGKINWDAQLFQD-HVTPIYI 237

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
            TEN     AL     ++ II      ++ +L  L  +G   +LVE G  V   F+ SRL
Sbjct: 238 YTENQ----ALTSSFDHVEIIQQTDIQIEDVLKDLYQKGYGHVLVEAGPNVTSQFLASRL 293

Query: 308 VDSIILYRSQIVIGEGGI----PSPLEEGYLE-KNFMCVRRDYFGSDVCLEYIGK 357
           V   ILY +  +IG  G+     +PL     +   F  V+ D   +D+ L    K
Sbjct: 294 VTHFILYLAPKIIGGQGVNQFYQTPLVTPLNQLPQFEIVQTDIIDTDLKLRMQRK 348


>gi|315093789|gb|EFT65765.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL060PA1]
          Length = 331

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 110/355 (30%), Positives = 171/355 (48%), Gaps = 35/355 (9%)

Query: 6   FDARF---MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            D R+   M  AL  +         NP V C+IV +  VIG+G     G PHAEV+AL +
Sbjct: 1   MDQRWDDAMVLALDMAAKS-PCPDPNPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQ 59

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG++A+GATA VTLEPC H GR+ PC+  +++ GI RVV+   DP+   SG   QWL   
Sbjct: 60  AGDDAKGATAVVTLEPCHHTGRTGPCSHALVDAGIARVVIAQSDPNPVASGGE-QWLRTH 118

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +V  ++  E       +   Q+ +R  +  K A S D         S  ITG  +++
Sbjct: 119 GVEVVTGVLSEEATALNADWTFSQIHRRPWVCWKYAASLDGRSAAPDGTSQWITGEQARH 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           QV L RA+  AI+VG GT LAD+P LT RL G+    P+R+++                 
Sbjct: 179 QVQLGRARCGAIIVGTGTALADNPRLTVRLPGVT-RQPLRVVVGMR-------------- 223

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
                      +P      R  + + ++    D  ++L +L  RGV  + +EGG  +A +
Sbjct: 224 -----------EPPAECHLRDDSASTLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGA 272

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLE 353
           F+ + L+D +I + +  V+G G +      +       +F+       G D+ + 
Sbjct: 273 FLAANLIDEVIAHMAPTVLGGGRVAIVDPTVATLSQAHHFVIDDVTQLGPDIQIH 327


>gi|326800779|ref|YP_004318598.1| riboflavin biosynthesis protein RibD [Sphingobacterium sp. 21]
 gi|326551543|gb|ADZ79928.1| riboflavin biosynthesis protein RibD [Sphingobacterium sp. 21]
          Length = 348

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 106/358 (29%), Positives = 164/358 (45%), Gaps = 22/358 (6%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE------ 61
             +M   L  +    G  S NP V  L+V    +IG G     G  HAE  A+       
Sbjct: 5   EIYMRRCLELAELGQGSVSPNPIVGALVVHHDTIIGEGWHRKYGEAHAEPNAIADVFNRY 64

Query: 62  -EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             A +  R +T YVTLEPCSH+G++PPCA  +I+  +++VVV  +DP  +V+GRG+  L 
Sbjct: 65  PNAADLLRESTVYVTLEPCSHHGKTPPCADLLIKHQVKQVVVACNDPFEQVNGRGIAKLR 124

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI +++ ++E E K     + TR   +R ++ LK A + +      G     ITG  +
Sbjct: 125 EAGIDVLEGVLEEEAKFVNRRFFTRVQHQRPYVILKWAETANGYFAPKGEKQQWITGSAA 184

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H  R++ DA+LVG  T L D+P+LT R       +P RI++D    L     +   
Sbjct: 185 QVVNHRWRSEEDAVLVGANTALIDNPQLTVR--HWFGRNPKRIVIDKELSLPPHLHLFD- 241

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
              A  I+     +       R K I +   D    + +L  L    V SL+VEGG    
Sbjct: 242 -KEAETIVFNAKKND---WQDRLKLIALENFDWYLPQNILYQLHLMDVQSLIVEGGIKTL 297

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           + FI + L D   + R Q    + G+ +P          +   ++  G+D    Y  K
Sbjct: 298 NLFIKAGLWDEARVLRGQAY-WKDGLEAP------RLQVIPQIKENIGNDSLTVYFNK 348


>gi|314924237|gb|EFS88068.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL001PA1]
 gi|314964911|gb|EFT09010.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL082PA2]
 gi|315103908|gb|EFT75884.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL050PA2]
 gi|327325608|gb|EGE67407.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL103PA1]
          Length = 331

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 110/355 (30%), Positives = 171/355 (48%), Gaps = 35/355 (9%)

Query: 6   FDARF---MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            D R+   M  AL  +         NP V C+IV +  VIG+G     G PHAEV+AL +
Sbjct: 1   MDQRWDDAMVLALDMAAKS-PCPDPNPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQ 59

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG++A+GATA VTLEPC H GR+ PC+  +++ GI RVV+   DP+   SG   QWL   
Sbjct: 60  AGDDAKGATAVVTLEPCHHTGRTGPCSHALVDAGIARVVIAQSDPNPVASGGE-QWLRTH 118

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +V  ++  E       +   Q+ +R  +  K A S D         S  ITG  +++
Sbjct: 119 GVEVVTGVLSEEATALNADWTFSQIHRRPWVCWKYAASLDGRSAAPDGTSQWITGEQARH 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           QV L RA+  AI+VG GT LAD+P LT RL G+    P+R+++                 
Sbjct: 179 QVQLGRARCGAIIVGTGTALADNPRLTVRLPGVT-RQPLRVVVGMR-------------- 223

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
                      +P      R  + + ++    D  ++L +L  RGV  + +EGG  +A +
Sbjct: 224 -----------EPPAGCHLRDDSASTLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGA 272

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLE 353
           F+ + L+D +I + +  V+G G +      +       +F+       G D+ + 
Sbjct: 273 FLAANLIDEVIAHMAPTVLGGGRVAIVDPTVATLSQAHHFVIDDVTQLGPDIQIH 327


>gi|260436195|ref|ZP_05790165.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 8109]
 gi|260414069|gb|EEX07365.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 8109]
          Length = 354

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 112/356 (31%), Positives = 180/356 (50%), Gaps = 13/356 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
             +M  AL  +    G TS NP V  +++ + G ++G G  A  G  HAEV AL +AG+ 
Sbjct: 3   ELWMRRALALAALAEGHTSPNPLVGAVVLDRQGRLVGEGFHARAGDAHAEVGALRQAGDA 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARG T  VTLEPC H+GR+PPC++ ++  GI RVV+ ++DPD RV G G++ L + G+ +
Sbjct: 63  ARGGTLVVTLEPCCHHGRTPPCSEAVLSAGIGRVVIALEDPDPRVDGGGIRQLREAGLEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  ++  E +    A+L R    R    LK A+S D    +    S  I+G  +++ VH 
Sbjct: 123 ISGVLREEARQQNRAFLHRVRTGRPFGVLKWAMSLDGRTALPNGVSQWISGPSARDWVHR 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LR+  DA++VG GTV  DDP LT R  G +   P+R++L     L   +++  TA LAP 
Sbjct: 183 LRSGMDAVVVGGGTVRGDDPLLTSR--GRRSPEPLRVVLSRSLDLPNQAQLWDTA-LAPT 239

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           ++    D  +  L    + + +  C+    ++L+  L  RG   +L E G  +A + I  
Sbjct: 240 LVAHGPDADLRRLPSGPEELGLSACE---PQQLMEALAKRGCNQVLWECGPELAAAAIRQ 296

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLEYIG 356
             V  I    +  ++G     +PL +         ++      +  G+D  L +  
Sbjct: 297 GCVQEIAAVVAPKLMGGMAARTPLGDLNFRAMDQVLQGQWHHSEPMGNDWLLRWRS 352


>gi|320335323|ref|YP_004172034.1| riboflavin biosynthesis protein RibD [Deinococcus maricopensis DSM
           21211]
 gi|319756612|gb|ADV68369.1| riboflavin biosynthesis protein RibD [Deinococcus maricopensis DSM
           21211]
          Length = 353

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 119/346 (34%), Positives = 172/346 (49%), Gaps = 10/346 (2%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
            FM  AL+ +   +G T+ NP V C+IV  G V+GRG     G  HAEV AL++AG  AR
Sbjct: 2   HFMHQALQQAALGLGRTAPNPPVGCVIVAGGEVVGRGFHPRAGQGHAEVFALQDAGVRAR 61

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           GATAYVTLEPCSH GR+PPCA  +I  G+ RVVV   DP+  V+GRG+  L   G+ V  
Sbjct: 62  GATAYVTLEPCSHTGRTPPCADALIRAGVARVVVAALDPNPVVAGRGVARLRTHGLDVHV 121

Query: 129 MM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
                        + +     R  +  K A + D  I       +P++G  ++  VH  R
Sbjct: 122 GPLADAAVRQQAGFRSLITRGRPWVVYKYAATLDGKISADDARPLPVSGPDARALVHTWR 181

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DAI VG+GTVLADDP LT R        P  I+ D H +    ++ ++       ++
Sbjct: 182 NEFDAIAVGVGTVLADDPHLTTR-GVPGGRDPRPIVFDRHARTPTTARALRPG----TVL 236

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
           VT  D      A      +++      L + L  L   GVTSLL+EGGA +A +   + L
Sbjct: 237 VTGPDA--RTDAHEAAGAHVLRAPT--LHEALQGLGALGVTSLLLEGGARLASALYAADL 292

Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           +D +  + +  ++G G         +  +    V+    G+DV +E
Sbjct: 293 IDEVRAFIAPTLLGAGLPALTSPAAHAPRALHDVQATRVGTDVLIE 338


>gi|220918025|ref|YP_002493329.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955879|gb|ACL66263.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 392

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 124/355 (34%), Positives = 180/355 (50%), Gaps = 7/355 (1%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            RFM  A+R +   +G TS NP+V  ++V+DG V+GRG  A  G PHAEV AL  AG  A
Sbjct: 26  ERFMRLAVREAARGLGRTSPNPAVGAVVVRDGRVVGRGHHARAGGPHAEVVALRAAGALA 85

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           RGA  Y TLEPC H+G++PPC+  ++E G+RRV V   DP+  V+GRG+  L + G+ +V
Sbjct: 86  RGADVYTTLEPCDHFGKTPPCSVALLEAGVRRVFVGSSDPNPLVNGRGMARLRRHGVAVV 145

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++          + T   E R  +TLK AV+ D  I      +  ++G  ++  VH L
Sbjct: 146 KGVLRDACDRLNAPWFTFITEGRPFVTLKAAVTLDGRIATRTGDARWVSGEAARAWVHRL 205

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R + DA+LVG GT  ADDP LT RL       P+R++LD    L     + +    AP +
Sbjct: 206 RDRVDAVLVGAGTARADDPRLTTRLP-RGGRDPIRVVLDSDLSLPRTLALFRGGSPAPTL 264

Query: 247 IVTENDDPVLALAFRKKNINIIYC-DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           +   +  P        + +         DL+ LL  L  RGV  LLVEGGA V   F+ +
Sbjct: 265 VAHASAAPARRYGPGVELVRCRRGKGGVDLRDLLAKLAARGVAHLLVEGGAHVHARFLEA 324

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLEYIG 356
            LVD + ++ +  + G  G+P     G            V  +  G D+ +  + 
Sbjct: 325 GLVDRVAVFVAPKIAGGDGVPLVAGRGPARMADALRLEQVAFERVGDDLLVTGVP 379


>gi|146276894|ref|YP_001167053.1| riboflavin biosynthesis protein RibD [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555135|gb|ABP69748.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 356

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 133/356 (37%), Positives = 191/356 (53%), Gaps = 11/356 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ ALR     +G T  NP+V C+IVK G V+GRG T  GG PHAE  AL EAG  A GA
Sbjct: 1   MAHALRLGARGLGRTWPNPAVGCVIVKAGRVVGRGWTRPGGRPHAEPVALAEAGAAALGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPC+H+GR+PPCA+ +   G+ RVV    DPD RV+GRG   L   GI + + +
Sbjct: 61  TAYVTLEPCAHHGRTPPCAEALAAAGVARVVTATGDPDPRVAGRGHALLHAAGIAVTEGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E+E +     +L R       +TLK+A S D  I  A   S  ITG  ++  VH +R +
Sbjct: 121 LEAEARAANAGFLKRVTLGLPFVTLKLAASVDGRIATASGESRWITGAHARRAVHAMRMR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DA++VG+GT LADDP+L+ R  G   H P+RI++D   + S DS++ +TA   PV +  
Sbjct: 181 HDAVMVGVGTALADDPDLSVRDLGA-AHQPVRIVVDSLLRHSCDSRLGRTARHVPVWLCH 239

Query: 250 ENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
             D P  A A  +    ++       D  D   ++  L   G+T +  EGGA +  + + 
Sbjct: 240 GPDAPEAARAGWRAAGALLLECEAGPDGLDPAAVMRRLASEGLTRIFCEGGARLGAALVR 299

Query: 305 SRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
           + L D ++ + +  +IGE G     P  L +      F     +  G D+   +  
Sbjct: 300 AGLCDELVSFTAGKLIGEEGRGAMGPLRLAQLAAAPAFRLASVETVGVDLLARWRP 355


>gi|56696631|ref|YP_166992.1| riboflavin biosynthesis protein RibD [Ruegeria pomeroyi DSS-3]
 gi|56678368|gb|AAV95034.1| riboflavin biosynthesis protein RibD [Ruegeria pomeroyi DSS-3]
          Length = 364

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 133/365 (36%), Positives = 201/365 (55%), Gaps = 11/365 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S  DAR+M+ AL   R   G+   NP+V C+IV +G ++GRG T  GG PHAEV AL +
Sbjct: 1   MSMSDARYMALALSLGRRGQGVCWPNPAVGCVIVNEGRIVGRGWTQPGGRPHAEVVALAQ 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  ARGATAYVTLEPC+H+G++PPCA+ +I  G+ RVV  ++D D RV+G G + L + 
Sbjct: 61  AGGAARGATAYVTLEPCAHHGKTPPCAEALIAAGVARVVAAIEDCDPRVAGNGFEMLRRA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   + E      L  +  +    R  +TLK+A S D  I  A   S  ITG  ++ 
Sbjct: 121 GIEVSVGIGEDAAARDLAGFFLKTELGRPWVTLKLASSFDGRIATASGESQWITGPEARR 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH +RA+ DA+LVG GT  +DDP LT R  G+ +  P+R+++  +  L L S++ +TA 
Sbjct: 181 AVHAMRARHDAVLVGAGTARSDDPSLTVRDMGVAQ-QPVRVVVSRYLDLPLMSQLARTAR 239

Query: 242 LAPVIIVTEND-DPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGA 296
             PV +      D     A+      +I C           LL  L G+G+T +  EGGA
Sbjct: 240 QVPVWLCHGPGVDGDRVRAWEGTGARLIPCAVEAGQISATDLLRQLGGQGLTRVFCEGGA 299

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
           ++A S + + +VD ++ + + + IG  G+P+     LE+      F  +     G+D+  
Sbjct: 300 SLAASLLAADMVDELVGFTAGLAIGAEGLPAVGVLGLEQLSEAARFDLIETRAIGADILH 359

Query: 353 EYIGK 357
            +  +
Sbjct: 360 RWQRQ 364


>gi|320011955|gb|ADW06805.1| riboflavin biosynthesis protein RibD [Streptomyces flavogriseus
           ATCC 33331]
          Length = 366

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 116/360 (32%), Positives = 180/360 (50%), Gaps = 12/360 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA 63
           + +   M  A+  +   +G TS NP V C+I+   G   G G     G PHAEV AL  A
Sbjct: 4   AAETAAMRRAITLAARGLGATSPNPVVGCVILDAAGDPAGEGFHQRAGGPHAEVHALRAA 63

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARG TA VTLEPC+H GR+ PCAQ +IE G+RRVV  V DP+   +  G   L   G
Sbjct: 64  GERARGGTAIVTLEPCNHTGRTGPCAQALIEAGVRRVVYAVSDPNP-QATGGADTLRGAG 122

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + +   ++  E +    A+LT     R ++  K A + D  I  A   S  IT   ++  
Sbjct: 123 LEVAQGLLADEAEAGNTAWLTSVRLGRPYVLWKYAATLDGRIAAADATSRWITSPEARAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTAL 241
           VH LRA++DA++VG GT  ADDP+L  R        P+R+++D     +   ++++  + 
Sbjct: 183 VHRLRAEADAVVVGSGTARADDPQLGVR-GIEGAVQPLRVVVDTGATAVRPGARVLDGSA 241

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            + V +  + +   L      +          D+  LL  L  RGV S+L+EGG  +A S
Sbjct: 242 PSLVAVADDAEAGHLPEEAVLRLPRAATGPGLDIDALLAALHARGVRSVLLEGGPVLAGS 301

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356
           F+ +  VD+++ Y + +++G G  P+ L +  +      +R D       G D+ +  + 
Sbjct: 302 FVAAGAVDTVVGYLAPVLLGAG--PAALADAGISTISQALRLDVTETVRIGPDLRITAVP 359


>gi|326440097|ref|ZP_08214831.1| putative riboflavin/cytosine deaminase [Streptomyces clavuligerus
           ATCC 27064]
          Length = 388

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 110/315 (34%), Positives = 157/315 (49%), Gaps = 7/315 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE 62
           ++ D   M  A+  +   +G TS NP V C+I    G + G G     G PHAEV AL  
Sbjct: 3   TAADIAAMRRAIELAARGLGSTSPNPVVGCVITDASGEIAGTGYHERAGGPHAEVHALRA 62

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  ARG TAYVTLEPC H GR+ PC+Q ++  GI RVV  V DP+   +  G   L   
Sbjct: 63  AGTRARGGTAYVTLEPCDHTGRTGPCSQALLAAGITRVVHAVADPNP-QASGGAGTLRAA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +   ++  E +    A+LT     R  +  K A + D  I      S  IT   ++ 
Sbjct: 122 GVRVECGLLGPEAEAVNAAWLTSVRLGRPQVVWKYAATLDGRIAAEDRSSRWITSPEARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH LRA +DA+++G GT+  DDP+L  R        P+R++LD    ++  ++++  A 
Sbjct: 182 DVHRLRAGADAVVIGSGTLRTDDPQLAVR-GIEGAVQPLRVVLDSRATVTPAARVLDDA- 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVA 299
              +I V E  D           +       R  DL  LL  L  RGV S+L+EGG  +A
Sbjct: 240 APTLIAVGEGADTGHLPGVDTVVLPAAPGPGRGLDLHALLAELSARGVRSVLLEGGPTLA 299

Query: 300 HSFINSRLVDSIILY 314
            +F+ +R VD +I Y
Sbjct: 300 GAFVAARAVDKVIGY 314


>gi|256421260|ref|YP_003121913.1| riboflavin biosynthesis protein RibD [Chitinophaga pinensis DSM
           2588]
 gi|256036168|gb|ACU59712.1| riboflavin biosynthesis protein RibD [Chitinophaga pinensis DSM
           2588]
          Length = 352

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 103/352 (29%), Positives = 165/352 (46%), Gaps = 23/352 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           SSFD  +M   L+ ++   G  + NP V  ++V +G +IG G     G  HAEV  +   
Sbjct: 3   SSFDEFYMQRCLQLAKLGAGNVAPNPMVGAVLVYEGRIIGEGYHRQYGFAHAEVNCVHSV 62

Query: 64  GEEAR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
             E +     AT YV+LEPC+HYG++PPCA+ I+   I  VV+   D   +V+G+G+  L
Sbjct: 63  KPEDQHLIPAATMYVSLEPCAHYGKTPPCAELIVSQQISTVVIGCVDTFSQVAGKGIGIL 122

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++E+  +     + T   +KR +I LK A + D  +  A    V I+  +
Sbjct: 123 KAAGITVRTGVLEAAARELNSRFFTFHEQKRPYIILKWAQNADGFMAGADGRPVRISNPL 182

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           +   VH  R++   ILVG  T +AD+P L  RL       P+RI++D   K   +  +  
Sbjct: 183 TDRLVHRWRSEEMGILVGTNTAVADNPRLNNRL--WTGKDPVRIVIDRTLKTPREYHLWH 240

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
               A + I  E  +          + +        L +L+ IL  R + S+LVEGGA V
Sbjct: 241 GP--ATLFITAEQAEKQDTAEMVTADFSQPL-----LPQLMKILHDRRILSVLVEGGAHV 293

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYF 346
                 + L D      ++++IG+     G+ +P+    L K    +  D  
Sbjct: 294 LREMTEAGLWDE-----ARVIIGDNPFALGVKAPVLPHALLKETQILESDQI 340


>gi|332291081|ref|YP_004429690.1| riboflavin biosynthesis protein RibD [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169167|gb|AEE18422.1| riboflavin biosynthesis protein RibD [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 333

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 96/353 (27%), Positives = 165/353 (46%), Gaps = 39/353 (11%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG----E 65
           +++  +  ++  + +   NPSV  ++V +  +I  G T+  G PHAEV  +  A     E
Sbjct: 7   YINRCIALAKNGLPVAMPNPSVGAVLVHNNKIIAEGYTSDYGGPHAEVNCIAFAKANTPE 66

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
               +T YV+LEPCSH+G++PPCA  ++  GI++VV+   DP  +V+G G++ L Q G+ 
Sbjct: 67  LIAKSTLYVSLEPCSHWGKTPPCADLVVASGIKKVVIGTIDPFAKVAGAGIKRLIQAGVD 126

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV---PITGFISKN 181
           +   + E E +     + T   +KR ++ LK A + D  I      +     IT   S+ 
Sbjct: 127 VTVGVQEKECQEINKRFFTYHEKKRPYVILKWAETADGFIAPKTRDAQQPVWITNPYSRQ 186

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH  R++  AILVG  TVL D+P LT R    +  +P+R+++D    L  +  +     
Sbjct: 187 LVHKWRSEEMAILVGGKTVLEDNPSLTTR--DWEGKNPIRVVIDTKGNLDNNLTVFNQEA 244

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
              VI  T++                        + +   L  +G+ S+++EGGA     
Sbjct: 245 ETLVIASTDS------------------------QLISETLYDKGIQSVIIEGGAQTLQH 280

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           FI++ L D   +++        G  +P     L ++F+  + D    D    Y
Sbjct: 281 FIDANLWDEARIFKGNTSF-SKGTKAP----QLSQHFLLEKTDTILDDTLHYY 328


>gi|304320114|ref|YP_003853757.1| diaminohydroxyphosphoriboxylaminopyrimidine deaminase
           +5-amino-6-(5-phosphoribosylamino)uracil reductase
           (RibD) [Parvularcula bermudensis HTCC2503]
 gi|303299017|gb|ADM08616.1| diaminohydroxyphosphoriboxylaminopyrimidine deaminase
           +5-amino-6-(5-phosphoribosylamino)uracil reductase
           (RibD) [Parvularcula bermudensis HTCC2503]
          Length = 366

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 112/367 (30%), Positives = 174/367 (47%), Gaps = 15/367 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++  D   M  A        G T+ NP V C++VK G ++G G     G  HAE+ AL+ 
Sbjct: 1   MTLTDDICMDRAAALGELGAGFTAPNPMVGCVLVKGGQIVGEGYHPRPGADHAEIAALKA 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG EARGA AYVTLEPC+HYG +PPC + +IE G+  VV  V DP+  ++  G + L   
Sbjct: 61  AGAEARGAVAYVTLEPCNHYGATPPCTKALIEAGVAEVVYAVADPNP-LASGGRETLQAA 119

Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           GI V             A+       R  +  K A + D  +   G  S  ITG  ++ +
Sbjct: 120 GIAVRAHPTLAASRLTDAWRFSLTADRPWVAAKFAATLDGRVATRGGDSQWITGPAARAR 179

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H LR +S AI+VG+GTVLAD+P L  R  G      +++I D   +    +  + +   
Sbjct: 180 SHDLRQRSGAIVVGVGTVLADNPALNPRPEGRAAAETLKVIFDSQARTPPHAACLSSP-- 237

Query: 243 APVIIVTENDDPVLAL-AFRKKNINIIYCDCRD----LKKLLTIL-VGRGVTSLLVEGGA 296
            PV+++T  D P  A  A ++   +II     +    L+  L  L    G  S++VEGG 
Sbjct: 238 GPVLLITAEDAPGAAKSALKESGAHIISVQRENEGLCLRSALHCLRADFGCLSIMVEGGG 297

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
            +  SF ++ L+D +  + +  ++G G      +          +      +DV +E  G
Sbjct: 298 RLLGSFADAGLIDEVWAFLAPKILGGG------QCAVDGHGPSRIGEAMALTDVSIEMAG 351

Query: 357 KNLCLQE 363
            +  ++ 
Sbjct: 352 PDFLIRG 358


>gi|182415465|ref|YP_001820531.1| riboflavin biosynthesis protein RibD [Opitutus terrae PB90-1]
 gi|177842679|gb|ACB76931.1| riboflavin biosynthesis protein RibD [Opitutus terrae PB90-1]
          Length = 389

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 106/367 (28%), Positives = 159/367 (43%), Gaps = 15/367 (4%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             ++    FM  AL  +R   G T  NP V  LIV++G V+  G  A  G PHAE  AL 
Sbjct: 4   TTTNNHETFMRRALEVARKGWGDTHPNPMVGALIVEEGRVVAEGFHAQDGGPHAERLALL 63

Query: 62  EAGEEAR-GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             G+  R GAT YVTLEPCS  GR+  C   II  GI++VVV   DP+   SG+G + L 
Sbjct: 64  NRGKPPRAGATMYVTLEPCSTSGRTGACTDAIISSGIKQVVVGATDPNPEHSGKGFEVLR 123

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             G+ ++  ++E E       +          I  K AV+ D  +      S  ITG  +
Sbjct: 124 AAGVEVIHGVLERECTDLNLIFNHWIHRATPLIASKSAVTLDGRMACRTGESKWITGEPA 183

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK- 238
           +  VH+ R    AI VG GTV  D+P LT R+ G  E  P+R + D   +  +D ++ K 
Sbjct: 184 RANVHVWRRLFPAIAVGAGTVFKDNPRLTARVEGQPEWCPIRFVFDGLLRTVVDKQLPKL 243

Query: 239 --TALLAPVIIVTENDDPV-LALAFRKKNINIIYCDCRDLKKLL----TILVGRGVTSLL 291
                 +  ++VT     +      R+  + +        +  +       V   V  +L
Sbjct: 244 YTDEFHSRTVVVTTPHGGLGYVRKLREMGVQVWVIPSPTQRVPMSEFRKKCVEERVAGVL 303

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYF 346
            EGGA +    +  + +D + +YR+ ++  +            EK         VR +  
Sbjct: 304 FEGGAQLVSHLLQEKQLDYLFIYRAPVLFADDRAKPMFNGLRTEKPVNGVRLSDVRNEVH 363

Query: 347 GSDVCLE 353
           G D    
Sbjct: 364 GDDTLTR 370


>gi|332527289|ref|ZP_08403353.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Rubrivivax benzoatilyticus JA2]
 gi|332111705|gb|EGJ11686.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Rubrivivax benzoatilyticus JA2]
          Length = 370

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 118/370 (31%), Positives = 174/370 (47%), Gaps = 17/370 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQA 59
           MP++  D   +  AL  +   +GLT  NP V C+I  D G V+GRG T   G  HAEV A
Sbjct: 1   MPLAPLDRTRLLEALALAEGSIGLTDPNPRVGCVIGHDDGRVLGRGATQRAGQAHAEVMA 60

Query: 60  LEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           L +A   G + RGATA+VTLEPC+H+GR+PPC   ++  GI RVVV V DP  +V+G G+
Sbjct: 61  LRDAAAAGHDTRGATAWVTLEPCAHHGRTPPCCDALVAAGIARVVVAVGDPFPQVAGAGI 120

Query: 117 QWLSQKGIIVDRMME---SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP 173
             L   G+ V+   E   +  +     + +R    R  + +KIA S D    +    S  
Sbjct: 121 TRLRAAGVQVELGDEDIAAAARELNIGFFSRVERGRPWLRMKIAASLDGRTALPNGASQW 180

Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233
           ITG  ++   H  R ++  +L GIGTVL DDP L  R        PMR ++D   +L   
Sbjct: 181 ITGEAARTDGHAWRRRAGCVLTGIGTVLDDDPRLDVRRV-PTVLQPMRAVMDSGLRLPAG 239

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTS 289
           ++++  A     ++         A A       +          D   +L  L   GV  
Sbjct: 240 ARVL--APPGRCLVFHAAPASPAAAALTAAGAELHARPGTDGRVDAPAVLADLAALGVNE 297

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG---GIPSPLEEGYLEKNFMCVRRDYF 346
           L VE GA +  + + + LVD +++Y + +++GEG       P E       +  V     
Sbjct: 298 LHVEAGARLNGALLAAGLVDELLVYTAPLLLGEGRPMAALGPFETLAQGHRYGFVDATPV 357

Query: 347 GSDVCLEYIG 356
           G D+ L    
Sbjct: 358 GEDLRLRLRR 367


>gi|256851712|ref|ZP_05557100.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii
           27-2-CHN]
 gi|260661570|ref|ZP_05862482.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii
           115-3-CHN]
 gi|256615670|gb|EEU20859.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii
           27-2-CHN]
 gi|260547627|gb|EEX23605.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii
           115-3-CHN]
          Length = 352

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 107/354 (30%), Positives = 168/354 (47%), Gaps = 13/354 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + + D +FM+ A+  +      T TNP V  ++VKDG V+  G     G  HAE  A+ +
Sbjct: 1   MMNKDEQFMALAINSASKGRYHTWTNPMVGAVVVKDGKVLATGYHHKYGDVHAERDAISK 60

Query: 63  AG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
              E+   +T YVTLEPC+H G+ PPC+  II   I+RVV+   DP   V+G+G++ L  
Sbjct: 61  LTPEQLFNSTLYVTLEPCNHTGKQPPCSDLIIASKIKRVVISEIDPHGLVTGKGIKKLRS 120

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
             I +   ++  E K     Y      K  +I LK A+S D+           ITG  + 
Sbjct: 121 HNISVTTGVLTQEAKKLNKHYNFFYEHKMPYICLKQALSLDHKCSYPDKRIQ-ITGKAAY 179

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            QVH  RA   AI++G  T L D+P L    +  Q+H P+RI+LD   +L   +  + + 
Sbjct: 180 EQVHRERADYQAIMIGSSTALIDNPTLLT--SVKQDHPPIRIVLDRRGRLLNKNLALFSD 237

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
             A   + T+N    L       +I +       L+++L +L    V S+ VEGG  +  
Sbjct: 238 KHAQTWLFTQNT--KLTKFPYPPHIKVFLLHSGSLREVLQLLTQNNVQSIYVEGGPTLMK 295

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY--FGSDVCL 352
           +FI  +L   +I Y S   +G       L+   + +N   ++ DY     D+ +
Sbjct: 296 TFIEEKLAQELITYFSPTFLGNNA----LDGFEITENINLIKPDYQVLDKDIRI 345


>gi|303245768|ref|ZP_07332051.1| riboflavin biosynthesis protein RibD [Desulfovibrio fructosovorans
           JJ]
 gi|302493031|gb|EFL52896.1| riboflavin biosynthesis protein RibD [Desulfovibrio fructosovorans
           JJ]
          Length = 380

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 99/375 (26%), Positives = 169/375 (45%), Gaps = 21/375 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++  DA FM+ AL  +    G    NP V  ++V+DG ++  G     G PHAEV+ L +
Sbjct: 1   MAPVDADFMARALELAERGRGFVMPNPRVGAVLVRDGGIVAEGWHKVFGGPHAEVECLHD 60

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G    G T YVTLEPC+H+G++PPC++ +++ GI RVVV   DP+    G      
Sbjct: 61  AERKGVSPAGGTMYVTLEPCNHFGKTPPCSRTLLDAGIARVVVGCLDPNPVAGGGAALLR 120

Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
            +   +   ++ES+ +  +  ++T Q   R ++T+K+A++ D  I      +  ++   S
Sbjct: 121 QEGVEVTVGVLESQCREAVADFITWQTMGRPYVTVKLAMTLDGRIATRTGDAAWVSCEAS 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG----LQEHSPMRIILDPHF-KLSLDS 234
           + +VH +RA S A+LVG GT+ AD+P L+ RL           P+ +++           
Sbjct: 181 RERVHAMRAASSAVLVGGGTLRADNPRLSHRLPENHPLAHNPQPLGVVVTRRLPDADAQL 240

Query: 235 KIIKTALLAPVIIVTENDDPVL-ALAFRKKNINIIYCD------CRDLKKLLTILVGR-G 286
            ++K      VI+          A    K  + +            DL   L  L     
Sbjct: 241 ALLKDRPTRLVILTDAKAAASPVATQLEKAGVRVWGLPRAANGEGLDLAAGLARLRQEAR 300

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCV 341
           V +LL EGG  +A S +   L D ++++ +  V+G+           + +          
Sbjct: 301 VFALLCEGGGELAASLLGQGLADELVIFYAPKVLGDAAAVPGFSGLTVPRMADAAQLRFT 360

Query: 342 RRDYFGSDVCLEYIG 356
             +  G+DV +    
Sbjct: 361 SMESVGTDVMVRLRP 375


>gi|83951487|ref|ZP_00960219.1| riboflavin biosynthesis protein RibD [Roseovarius nubinhibens ISM]
 gi|83836493|gb|EAP75790.1| riboflavin biosynthesis protein RibD [Roseovarius nubinhibens ISM]
          Length = 364

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 139/364 (38%), Positives = 201/364 (55%), Gaps = 11/364 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S  D   M  ALR  R  +G    NP+V C+IV    ++GRG TA GG PHAE QAL E
Sbjct: 1   MSEQDIHHMREALRLGRSAMGSAWPNPAVGCVIVAGDQIVGRGATAPGGRPHAEPQALAE 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  ARGATAYVTLEPC+H+G++PPCA+ +I+ G+ RVVV V D D RVSGRG++ L + 
Sbjct: 61  AGAAARGATAYVTLEPCAHHGKTPPCAEVLIKAGVARVVVAVGDSDPRVSGRGIEMLRKA 120

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +V  ++E E +  L  +  R  E R  +TLK+A S D  I  A   S  ITG  ++ 
Sbjct: 121 GIEVVQGVLEDEARTDLAGFFLRIEEGRPWVTLKLASSFDGRIATASGHSQWITGPEARQ 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +VH  RA+ DA++VG GT  AD+P LT R   +     +R+++     + L S++ +TA 
Sbjct: 181 RVHEFRARHDAVMVGAGTARADNPMLTVRGLDVPRQP-VRVVVSRRLDVPLMSELARTAG 239

Query: 242 LAPVIIVTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
             PV +    D D  L  A++     ++ C       ++  +L  L  RG+T +  EGG 
Sbjct: 240 EVPVWMCHGPDADKSLREAWQGLGAELVECRLHGRQLEIGSVLQALGERGLTRVFCEGGG 299

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
           A+A S +++ LVD +I + + +VIG  G+P      L        F  +     G D+  
Sbjct: 300 ALAASLLSAGLVDELIGFTAGVVIGAEGLPGVGAMGLARLEEAPRFRLIEAAAVGGDIMH 359

Query: 353 EYIG 356
            +  
Sbjct: 360 RWHR 363


>gi|332676151|gb|AEE72967.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes 266]
          Length = 323

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 110/347 (31%), Positives = 168/347 (48%), Gaps = 32/347 (9%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ AL  +         NP V C+IV +  VIG+G     G PHAEV+AL +AG++ RGA
Sbjct: 1   MALALDMAAKS-PCPDPNPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDVRGA 59

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TA VTLEPC H GR+ PC+  +++ GI RVV+   DP+   SG   QWL   G+ +V  +
Sbjct: 60  TAVVTLEPCHHTGRTGPCSHALVDAGIARVVIAQSDPNPVASGGE-QWLRTHGVEVVTGV 118

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +  E       +   Q+ +R  +  K A S D         S  ITG  +++QV L RA+
Sbjct: 119 LSEEATALNADWTFSQIHRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRAR 178

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
             AI+VG GT LAD+P LT RL G+  H P+R+++                         
Sbjct: 179 CGAIIVGTGTALADNPRLTVRLPGVT-HQPLRVVVGMR---------------------- 215

Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
              +P      R  + + ++    D  ++L +L  RGV  + +EGG  +A +F+ + LVD
Sbjct: 216 ---EPPAGCHLRDDSASTLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLVD 272

Query: 310 SIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLE 353
            +I + +  V+G G        +       +F+       G D+ + 
Sbjct: 273 EVIAHMAPTVLGGGRAAVVDPTVATLSQAHHFVIDDVTQLGPDIQIH 319


>gi|114777001|ref|ZP_01452021.1| RibD [Mariprofundus ferrooxydans PV-1]
 gi|114552522|gb|EAU54982.1| RibD [Mariprofundus ferrooxydans PV-1]
          Length = 379

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 106/358 (29%), Positives = 165/358 (46%), Gaps = 13/358 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           + +     M  A+  ++   G T  NP V  ++V  G V+G G     G PHAE  AL+ 
Sbjct: 21  MPTQHEALMLQAIELAQRGGGTTHPNPRVGAVVVNRGEVVGVGWHKRAGGPHAEAVALQV 80

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ ARG T YVTLEPCS +GR+P C + I   GI+ VV    DP+ ++SG G + L   
Sbjct: 81  AGKRARGGTLYVTLEPCSAHGRTPACTEAIRRAGIKHVVYASPDPNPQMSG-GHKILEAA 139

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++  + +     +       R ++  K A+S D  +      S  I+G  S+ 
Sbjct: 140 GISVTAGVLREQAEALNIPFFHYLRTGRPYVIAKAAISLDGKMATRTHHSQWISGEASRL 199

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILD-PHFKLSLDSKIIKTA 240
               LRA SDAI+VG GT+  D+P LT R        P+R+++     K   D K++   
Sbjct: 200 HAQGLRAASDAIIVGAGTLKHDNPSLTVRGVPAVGDVPLRVVMCFETPKFFADCKLLSAE 259

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
                 + + N        +R+  I +       L  +L  L   G   LL+EGG  +  
Sbjct: 260 APTRFYVRSINTHTE---QWREAGIEVEQVTS--LAGVLKHLAEDGRLMLLLEGGGELHA 314

Query: 301 SFINSRLVDSIILYRSQIVIGE-GGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           SF+ +R  D ++LY++ I+IG    IP      ++      +   + R   G D  + 
Sbjct: 315 SFLEARFTDELVLYQAPILIGGRDAIPLWSGQGVDSVDHAPHLEQIERRILGVDQMIR 372


>gi|291518541|emb|CBK73762.1| riboflavin biosynthesis protein RibD [Butyrivibrio fibrisolvens
           16/4]
          Length = 257

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 96/254 (37%), Positives = 139/254 (54%), Gaps = 5/254 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           D  +M  AL  ++   G  + NP V  +IVKDG++IG G     G  HAE  AL++    
Sbjct: 3   DKTYMLRALELAKLGAGFVNPNPMVGAVIVKDGVIIGEGYHEKYGQLHAERNALKDCRER 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G +  GAT YVTLEPC HYG++PPC + I+E  I RVV+   D +  V+G+G   L + G
Sbjct: 63  GNDPAGATMYVTLEPCCHYGKTPPCTEAIVESRINRVVIGTLDVNPVVAGKGADILREHG 122

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +   ++E E K     +    + KR ++ +K A++ D  I      S  IT   ++  
Sbjct: 123 IRVEVGLLEKECKKLNRVFNKYMLSKRPYVVMKYAMTADGKIATVTGESKWITSDEAREN 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LR     I+VG+ TV+ D+P L CRL+     +P+RII D H +  LDSK+++TA  
Sbjct: 183 VHRLRKNLSGIMVGVTTVITDNPSLDCRLDE-PAVNPVRIICDSHLRTPLDSKVVETAGG 241

Query: 243 APVIIVTENDDPVL 256
              II T +DD   
Sbjct: 242 IKTIIATSSDDEKK 255


>gi|297567806|ref|YP_003686777.1| hypothetical protein Mesil_3462 [Meiothermus silvanus DSM 9946]
 gi|296852255|gb|ADH65269.1| hypothetical protein Mesil_3462 [Meiothermus silvanus DSM 9946]
          Length = 383

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 118/374 (31%), Positives = 190/374 (50%), Gaps = 35/374 (9%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  AL  +   +G TS NP V C++V+   V+GRG     G PHAEV AL +AGE 
Sbjct: 6   DVAFMRQALELAAQGIGRTSPNPPVGCVLVRGAEVVGRGFHPRAGEPHAEVLALRQAGER 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GATAY+TLEPC+HYGR+PPCAQ +IE G+ RVVV   DP+ +VSGRGL+ L++ G+ +
Sbjct: 66  AQGATAYITLEPCAHYGRTPPCAQALIEAGVARVVVATTDPNPQVSGRGLEQLARAGVAV 125

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++  E +     +      +   +  K A+S D         +  ++G  ++ +V L
Sbjct: 126 TTGLLRDEAERQQEVFRHWIAHREPFVVFKTALSLDGKTATVAGDARWVSGEAARERVQL 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-----NGLQEHSPMRIILDPHFKLSLDSKII--- 237
           LR + DA++VG+GTVL DDP LTCRL            P++++ D H +    +++    
Sbjct: 186 LRDELDAVVVGVGTVLTDDPWLTCRLREPAVPHRVPRDPVKVVFDTHARTPPRARLFAPG 245

Query: 238 -KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGR------ 285
            +      ++++ E  DP      R+    ++  +        L+  L  L  R      
Sbjct: 246 PRGEAARVLLLIAEGADPARVEELRQAGAEVVRLEAGPDGRPRLEAALQALEARGLTGLL 305

Query: 286 -GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFM 339
               S+       +A SF ++  V  ++ + +  ++G  G P+PL    +      ++  
Sbjct: 306 LEGGSV-------LAGSFFDAGKVHKVVAFVAPKLVGGRG-PTPLAGNGVARMSQARHLE 357

Query: 340 CVRRDYFGSDVCLE 353
            VR +  G+DV +E
Sbjct: 358 RVRVEPLGTDVLVE 371


>gi|163847753|ref|YP_001635797.1| riboflavin biosynthesis protein RibD [Chloroflexus aurantiacus
           J-10-fl]
 gi|222525619|ref|YP_002570090.1| riboflavin biosynthesis protein RibD [Chloroflexus sp. Y-400-fl]
 gi|163669042|gb|ABY35408.1| riboflavin biosynthesis protein RibD [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449498|gb|ACM53764.1| riboflavin biosynthesis protein RibD [Chloroflexus sp. Y-400-fl]
          Length = 391

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 119/355 (33%), Positives = 170/355 (47%), Gaps = 14/355 (3%)

Query: 12  SAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGAT 71
             AL+ +   VG TS NP V  ++V+DG V+G G T   G PHAE  AL  AGE ARGA 
Sbjct: 15  ELALQQAAAVVGRTSPNPPVGAVVVRDGQVVGLGATQPAGGPHAERIALAAAGERARGAD 74

Query: 72  AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
            Y TLEPC+ YGR+PPC + II  GIRRV     DPD R+       L   GI V R+  
Sbjct: 75  LYTTLEPCTFYGRTPPCTEAIIAAGIRRVFFIAHDPDPRMGDGAAAVLQPAGIEVYRITT 134

Query: 132 SEGK--IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
                   L  +  R    R  +T K A++ D  I  A   S  IT   ++ QVH LR Q
Sbjct: 135 GAATVAGQLAPFRCRVQCGRPLVTAKYAMTLDGRIATASGDSRWITDPAARAQVHRLRDQ 194

Query: 190 SDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            D I+VG+GT+  DDP+LT RL+    +   P+R+I+D   +  L +++++  L    +I
Sbjct: 195 VDVIMVGVGTIRNDDPQLTTRLDQHWREPRHPLRVIVDSRGQTPLHARVVRGDLPGQTLI 254

Query: 248 VTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
                +P    A + + + ++           L  LL  L   G   LLVEGGA +  + 
Sbjct: 255 ACVQPEPAWLAAMQSRGVRVVQFPPDATGRVALAPLLHYLAHEGYNHLLVEGGAMLLGAL 314

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352
               L+D I  +    V+ +   P P+    +      + +   R + +  D  L
Sbjct: 315 HAECLIDEIWAFIGARVVNDALAPGPMAGPGVACMAMARRYRLRRLEQYDQDALL 369


>gi|86357148|ref|YP_469040.1| 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidinedea
           minase protein [Rhizobium etli CFN 42]
 gi|86281250|gb|ABC90313.1| 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidinedea
           minase protein [Rhizobium etli CFN 42]
          Length = 435

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 145/253 (57%), Positives = 187/253 (73%), Gaps = 1/253 (0%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M V+  D  FM+AA+R SR H+G T+TNPSV C+IVKDG+V+G+ VTA GG PHAE QAL
Sbjct: 1   MSVTPDDEGFMAAAIRLSRRHLGRTATNPSVGCVIVKDGVVVGQAVTALGGRPHAEPQAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAG+ ARGATAYVTLEPCSH+G++PPCA+ +I CG+ RVV+ V DPD RVSGRG+  L 
Sbjct: 61  AEAGDLARGATAYVTLEPCSHHGKTPPCAEALIACGVARVVISVTDPDPRVSGRGISMLR 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI +   ++E+EG+  L AYLTRQ + R ++TLK+AVS D MIG  G G V ITG  +
Sbjct: 121 EAGIAVDAGVLEAEGRRSLAAYLTRQTKNRPYVTLKLAVSADGMIGRQGEGQVAITGPEA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           + +V  LRA++DAILVGIGT ++DDP LT R  GL+  SP+RI+LDP   L L SK++ T
Sbjct: 181 RAEVQTLRAETDAILVGIGTAISDDPLLTVRTPGLEAQSPIRIVLDPLLSLPLTSKLVAT 240

Query: 240 ALLAPVIIVTEND 252
           A   PVI+V   +
Sbjct: 241 ARDVPVILVASEE 253



 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 41/111 (36%), Positives = 60/111 (54%)

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
           V   D     +A     + I+YC+    + LL  L  RG++SLL+EGGA  A  F+ + L
Sbjct: 325 VDATDADARRVALEAAGVEIVYCNPYHPEVLLPALATRGISSLLIEGGAKTAKLFLEAGL 384

Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           +D I LY++ +VIGEGGI SP++   +   F  +    FG D   EY  +N
Sbjct: 385 LDRIQLYQAPVVIGEGGIESPVQATDIPSGFTHMGTQLFGVDRLDEYEREN 435


>gi|282933540|ref|ZP_06338910.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 208-1]
 gi|297205330|ref|ZP_06922726.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii
           JV-V16]
 gi|281302283|gb|EFA94515.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 208-1]
 gi|297149908|gb|EFH30205.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii
           JV-V16]
          Length = 351

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 107/352 (30%), Positives = 167/352 (47%), Gaps = 13/352 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D +FM+ A+  +      T TNP V  ++VKDG V+  G     G  HAE  A+ +  
Sbjct: 2   NKDEQFMALAINSASKGRYHTWTNPMVGAVVVKDGKVLATGYHHKYGDVHAERDAISKLT 61

Query: 65  -EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            E+   +T YVTLEPC+H G+ PPC+  II   I+RVV+   DP   V+G+G++ L    
Sbjct: 62  PEQLFNSTLYVTLEPCNHTGKQPPCSDLIIASKIKRVVISEIDPHGLVTGKGIKKLRSHN 121

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +   ++  E K     Y      K  +I LK A+S D+           ITG  +  Q
Sbjct: 122 ISVTTGVLTQEAKKLNKHYNFFYEHKMPYICLKQALSLDHKCSYPDKRIQ-ITGKAAYEQ 180

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  RA   AI++G  T L D+P L    +  Q+H P+RI+LD   +L   +  + +   
Sbjct: 181 VHRERADYQAIMIGSSTALIDNPTLLT--SVKQDHPPIRIVLDRRGRLLNKNLALFSDKH 238

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           A   + T+N    L       +I +       L+++L +L    V S+ VEGG  +  +F
Sbjct: 239 AQTWLFTQNT--KLTKFPYPPHIKVFLLHSGSLREVLQLLTQNNVQSIYVEGGPTLMKTF 296

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY--FGSDVCL 352
           I  +L   +I Y S   +G       L+   + +N   ++ DY     D+ +
Sbjct: 297 IEEKLAQELITYFSPTFLGNNA----LDGFEITENINLIKPDYQVLDKDIRI 344


>gi|254392899|ref|ZP_05008067.1| riboflavin biosynthesis protein RibD [Streptomyces clavuligerus
           ATCC 27064]
 gi|197706554|gb|EDY52366.1| riboflavin biosynthesis protein RibD [Streptomyces clavuligerus
           ATCC 27064]
          Length = 379

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 109/308 (35%), Positives = 154/308 (50%), Gaps = 7/308 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  A+  +   +G TS NP V C+I    G + G G     G PHAEV AL  AG  ARG
Sbjct: 1   MRRAIELAARGLGSTSPNPVVGCVITDASGEIAGTGYHERAGGPHAEVHALRAAGTRARG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
            TAYVTLEPC H GR+ PC+Q ++  GI RVV  V DP+   +  G   L   G+ +   
Sbjct: 61  GTAYVTLEPCDHTGRTGPCSQALLAAGITRVVHAVADPNP-QASGGAGTLRAAGVRVECG 119

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++  E +    A+LT     R  +  K A + D  I      S  IT   ++  VH LRA
Sbjct: 120 LLGPEAEAVNAAWLTSVRLGRPQVVWKYAATLDGRIAAEDRSSRWITSPEARADVHRLRA 179

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
            +DA+++G GT+  DDP+L  R        P+R++LD    ++  ++++  A    +I V
Sbjct: 180 GADAVVIGSGTLRTDDPQLAVR-GIEGAVQPLRVVLDSRATVTPAARVLDDA-APTLIAV 237

Query: 249 TENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
            E  D           +       R  DL  LL  L  RGV S+L+EGG  +A +F+ +R
Sbjct: 238 GEGADTGHLPGVDTVVLPAAPGPGRGLDLHALLAELSARGVRSVLLEGGPTLAGAFVAAR 297

Query: 307 LVDSIILY 314
            VD +I Y
Sbjct: 298 AVDKVIGY 305


>gi|34540017|ref|NP_904496.1| riboflavin biosynthesis protein RibD [Porphyromonas gingivalis W83]
 gi|34396328|gb|AAQ65395.1| riboflavin biosynthesis protein RibD [Porphyromonas gingivalis W83]
          Length = 330

 Score =  285 bits (730), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 115/331 (34%), Positives = 173/331 (52%), Gaps = 18/331 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++   G TS NP V  ++V  G +IG G     G PHAEV A+    + 
Sbjct: 4   DPLYMRRAIELAQNAEGFTSPNPLVGAVLVAHGRIIGEGYHHCAGMPHAEVIAINSVRDR 63

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           A  R +T YV+LEPCSHYG++PPCA+ I+  GI  VVV + DP   VSGRG++ L   G+
Sbjct: 64  ALLRESTLYVSLEPCSHYGKTPPCAELILREGIPHVVVAMLDPFPSVSGRGIKMLRDAGV 123

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI----GMAGCGSVPITGFIS 179
            +   ++  E +     +LT Q + R ++TLK A S D  I      A    V ++  ++
Sbjct: 124 SVQVGLLAEEAEELNRHFLTAQRQHRPYVTLKWAESSDGFIDALRDDASTPPVRLSTPLT 183

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
              VH  R   DAILVG  T L D+P LT R       +P+R++ D H  L     +   
Sbjct: 184 TRFVHHRRMIHDAILVGFRTALLDNPSLTVR--HWYGRNPLRVVTDRHLALPRHLTLFDG 241

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAA 297
           +   P ++ TE + P    +     ++ +  D     ++++L  L  RG+ SLLVEGGA 
Sbjct: 242 S--VPTLVFTEKEQP----SGYPSAVSFVRIDPSRPPVEQMLAELHARGIQSLLVEGGAC 295

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
           +  SFI+S L D + +  S I++   G+ +P
Sbjct: 296 ILRSFIDSGLYDDVRIEHSTIIL-NEGVRAP 325


>gi|94984408|ref|YP_603772.1| riboflavin biosynthesis protein RibD [Deinococcus geothermalis DSM
           11300]
 gi|94554689|gb|ABF44603.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Deinococcus
           geothermalis DSM 11300]
          Length = 383

 Score =  285 bits (730), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 116/361 (32%), Positives = 177/361 (49%), Gaps = 12/361 (3%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P  + DA  M  AL  + + +G T+ NP V C+IV+ G V+GRG     G PHAEV AL 
Sbjct: 21  PGEAADAALMDQALAQAAYGLGRTAPNPPVGCVIVRGGEVVGRGFHPRAGEPHAEVFALR 80

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           EAGE ARGATAYVTLEPCSH+GR+PPCA  +I  G+ RVVV   DP+ +V+GRG++ L  
Sbjct: 81  EAGERARGATAYVTLEPCSHFGRTPPCADALIRAGVARVVVAALDPNPQVAGRGVERLRA 140

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            G+ +   + E         + +     R  +  K A++ D  +   G G+  +T   ++
Sbjct: 141 AGLHVTVGVGEEAALRQQAGFRSLVARGRPWVVYKYAMTLDGKVAAPGEGNGAVTSAPAR 200

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
            +V   R + DA+ VG GT+LADDP LT R        P  ++ D   +  + ++ ++  
Sbjct: 201 ARVMRWRNELDAVAVGSGTLLADDPALTTR-GVPGGRDPRPVLFDRRARTPVAARALRPG 259

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
                I+VT                 I+  D   L + L  L    ++SLL+EGG  +A 
Sbjct: 260 ----TIVVT--APETNTDHLEAAGAVILRADS--LPEALHGLGELNISSLLLEGGPRLAS 311

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           +F    L+D +    +  ++G G  P   P       +     + +  G D+ +      
Sbjct: 312 AFFADGLIDEVRALIAPRLLGAGLPPLDGPARPLAQAQILRDPQGEPLGPDLLVTGRLNE 371

Query: 359 L 359
           +
Sbjct: 372 I 372


>gi|306833066|ref|ZP_07466197.1| riboflavin biosynthesis protein RibD [Streptococcus bovis ATCC
           700338]
 gi|304424775|gb|EFM27910.1| riboflavin biosynthesis protein RibD [Streptococcus bovis ATCC
           700338]
          Length = 351

 Score =  285 bits (730), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 121/359 (33%), Positives = 179/359 (49%), Gaps = 21/359 (5%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAGE 65
             +M+ A+  ++       TNP V  +IVK+G VI RG     G  HAE  A+   E  E
Sbjct: 3   ENYMAQAIAAAKQGFRQIYTNPLVGAVIVKNGRVIARGAHLQYGHEHAEKNAILHCEVPE 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           E   +T YVTLEPC H G+ PPC Q I+E GI++VVV   DP+  V+G+GL++L  +GI 
Sbjct: 63  ELANSTLYVTLEPCHHTGKQPPCTQAIVEAGIKKVVVGQLDPNPLVAGKGLEFLKSQGIE 122

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V +++E+E +     Y      KR ++ LK AVS D  I +       +T   +   VH
Sbjct: 123 VVTQVLENEARALNPHYNFYHEYKRPYVVLKQAVSLDGKIAVL-GKRTALTNDETNRFVH 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALL 242
             R    AILVG  TVL D+P+L     G   + P+R+ILD   ++    + +I K    
Sbjct: 182 DERDDYQAILVGADTVLIDNPQLL--GAGTSLYPPVRVILDETGRIFDKRELQIFKNQS- 238

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           APV I +        +A    +I +I      +  +L  L  + + S+ VEGGA V  +F
Sbjct: 239 APVYIFSR-----RQVANLPAHITVIALSNFSIANILQALYEKKIQSVYVEGGAQVHDAF 293

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           + S L D +I Y +  VIG  G  +      +E+ +          D  ++ IG NL L
Sbjct: 294 LASDLWDELISYVTPKVIGGNGRAAMASSRQVEQVYDL-------QDFSVQTIGTNLRL 345


>gi|224144951|ref|XP_002325472.1| predicted protein [Populus trichocarpa]
 gi|222862347|gb|EEE99853.1| predicted protein [Populus trichocarpa]
          Length = 592

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 97/369 (26%), Positives = 172/369 (46%), Gaps = 19/369 (5%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S DA ++  A + +    G +S +P+  C+I    GIV G G     G   AEV A+E A
Sbjct: 33  SLDAAYIKRAAQIADNSAGFSSPHPNFGCVIATTSGIVAGEGYLYAQGTKAAEVLAVEAA 92

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G  ++G+TAY+ +EP   +G        +++ GI RVVV +  P   + G  ++ L  +G
Sbjct: 93  GGFSKGSTAYLNMEPGDCHGDQ-SAVSALVQAGITRVVVGIRHPLQHLHGNAIRSLRGQG 151

Query: 124 IIVDRMMESE-----------GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172
           + VD + E               +     + R   +     LK A++ D  I      + 
Sbjct: 152 LQVDVVGEDLKSKIMEEARKSCLLVNAPLIHRATSQVPFSVLKYAMTLDGKIATTSGHAT 211

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
            I+   S+N+V  LR +SDAI+VG  TV  D+P LT R  G   H+P+RI++   F L  
Sbjct: 212 WISSKKSRNRVFELRGRSDAIIVGGNTVRKDNPRLTARHGG--GHTPIRIVMTQTFNLPE 269

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
           ++ +   + ++ +++               K + ++  D  + ++++     RG  S+L 
Sbjct: 270 EANLWDISDVSTIVVTQRGARRSFQKLLASKGVEVVEFDILNPREVMEYFHDRGYLSILW 329

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           E G  +A S I+S ++  +  + +  +IG    PSP+ E  + +    +       DVC 
Sbjct: 330 ECGGTLAASAISSGVIHKVFAFVAPKIIGGKNAPSPVGELGMVEMSQALDLI----DVCF 385

Query: 353 EYIGKNLCL 361
           E +G ++ +
Sbjct: 386 EQVGPDMLI 394


>gi|241204003|ref|YP_002975099.1| riboflavin biosynthesis protein RibD [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857893|gb|ACS55560.1| riboflavin biosynthesis protein RibD [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 438

 Score =  285 bits (729), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 148/253 (58%), Positives = 188/253 (74%), Gaps = 1/253 (0%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M ++  D RFM+AA+R SRWH+G T+TNPSV CLIV+ G+++GR VTA GG PHAE QAL
Sbjct: 1   MRITPHDERFMAAAIRLSRWHLGRTATNPSVGCLIVRGGVIVGRAVTALGGRPHAETQAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAG  ARGATAYVTLEPCSH+G++PPC+Q +I  G+ RVV+ V DPD RVSGRG+  L 
Sbjct: 61  AEAGALARGATAYVTLEPCSHHGKTPPCSQALIAYGVARVVISVTDPDPRVSGRGIAMLR 120

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI VD  ++E+EG+  L AYLTRQ + R ++TLK+AVS D MIG  G G V ITG  +
Sbjct: 121 EAGIEVDTGVLEAEGRHSLAAYLTRQTKNRPYVTLKLAVSADGMIGREGAGQVAITGPEA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           + QV  LRA++DAILVGIGT +ADDP LT R  GL+  SP+RI+LDP   L L SK+++T
Sbjct: 181 RAQVQALRAETDAILVGIGTAIADDPLLTVRSPGLESQSPIRIVLDPSLALPLTSKLVET 240

Query: 240 ALLAPVIIVTEND 252
           A   PVI+V   +
Sbjct: 241 AREVPVIVVASEE 253



 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/101 (38%), Positives = 54/101 (53%)

Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
              A     + +++C+    + LL  L  RG++SLLVEGGA  A  F+ + LVD I LY+
Sbjct: 336 RRAALEAAGVEVVHCNPYHPEVLLPALATRGISSLLVEGGAKTARLFLEAGLVDRIQLYQ 395

Query: 316 SQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
           + +VIGEGGI SPL+   +   F       FG D   EY  
Sbjct: 396 APVVIGEGGIESPLDATDIPSGFAHTGTLMFGGDRLDEYER 436


>gi|320546418|ref|ZP_08040733.1| riboflavin biosynthesis protein RibD [Streptococcus equinus ATCC
           9812]
 gi|320448803|gb|EFW89531.1| riboflavin biosynthesis protein RibD [Streptococcus equinus ATCC
           9812]
          Length = 351

 Score =  285 bits (729), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 118/361 (32%), Positives = 174/361 (48%), Gaps = 21/361 (5%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63
            D  +M  A+  ++     T TNP V  +IVKD  VI RG     G  HAE  A+     
Sbjct: 1   MDKNYMLQAIEEAKRGFRQTYTNPLVGAVIVKDNHVIARGAHLQYGHEHAEKNAILHCQT 60

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            EE   +T YVTLEPC H G+ PPC Q I+E GI++VV    DP+  V+G+G+ +L ++G
Sbjct: 61  PEELFNSTLYVTLEPCHHGGKQPPCTQAIVEVGIKKVVAGQFDPNPLVAGKGVAFLKEQG 120

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +V  ++E E +     Y      KR ++ LK AVS D  I +       +T   +   
Sbjct: 121 IEVVTHVLEEEARALNKHYNVYYERKRPYVVLKQAVSLDGKIAVL-GKRTALTDDETSRF 179

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTA 240
           VH  R    AILVG  TVL D+P L    +      P+R+ILD   ++   LD +I    
Sbjct: 180 VHDERDDFHAILVGADTVLIDNPRLL--GSETSFCPPVRVILDEKGRVFDQLDLQIF-ED 236

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
             APV I +        ++   K++ +I      ++ +L +L  + + S+ VEGGA+V  
Sbjct: 237 NSAPVYIFSS-----RKVSDLPKHVTVIDLPEFSIENILQVLYEKKLQSVYVEGGASVHD 291

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
           +F+ S L D II Y +  +IG     +         +F  V       D   + IG N+ 
Sbjct: 292 AFLESGLFDEIISYVTPKLIGGNAKAA-------MSSFRLVSHALELDDFSCQKIGNNIR 344

Query: 361 L 361
           L
Sbjct: 345 L 345


>gi|120434994|ref|YP_860680.1| bifunctional riboflavin biosynthesis protein RibD [Gramella
           forsetii KT0803]
 gi|117577144|emb|CAL65613.1| bifunctional riboflavin biosynthesis protein RibD [Gramella
           forsetii KT0803]
          Length = 347

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 99/355 (27%), Positives = 164/355 (46%), Gaps = 19/355 (5%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           +   +++   +  ++  +G T  NP V  +IV    +IG G     G PHAEV A+    
Sbjct: 2   NIHEKYIKRCIELAQNGLGTTYPNPMVGSVIVYKNKIIGEGWHKKAGEPHAEVNAINSVK 61

Query: 65  EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           ++   + A  YV+LEPCSH+G++PPC+  II  GI++V++   DP  +V+GRG++ L   
Sbjct: 62  DQSLLKHAIIYVSLEPCSHFGKTPPCSDLIIAKGIKKVIIGTMDPFAKVAGRGIKKLMDA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV---PITGFI 178
           G  +   ++E E       + T Q ++R +I LK A +QD  I            IT   
Sbjct: 122 GCEVNVGILEEECLELNKRFFTFQKKQRPYIILKWAQTQDGFIAPEKKDKKRPVWITNKY 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           S   VH  R++  AILVG  TV+ D+P L  R       +P+RII+D + K+S D  ++ 
Sbjct: 182 SGQLVHKWRSEETAILVGTNTVIEDNPSLNVR--KWTGSNPVRIIIDQNLKISKDHSVLD 239

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNI--NIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
                  +++               NI    I       +++  +L    + S+++EGG+
Sbjct: 240 E--KQKTVVLC----KKKTTGSEDGNIIFEEIEFSENISQEICDVLHKYDLQSVIIEGGS 293

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL--EKNFMCVRRDYFGSD 349
                FI + L D   +        + G+ +P   G    EKN        + +D
Sbjct: 294 NTLQQFIKAGLWDEARVLTGSSYF-QSGVKAPEISGIPVAEKNISGDLLKIYKND 347


>gi|295424908|ref|ZP_06817620.1| riboflavin biosynthesis protein RibD [Lactobacillus amylolyticus
           DSM 11664]
 gi|295065347|gb|EFG56243.1| riboflavin biosynthesis protein RibD [Lactobacillus amylolyticus
           DSM 11664]
          Length = 347

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 180/353 (50%), Gaps = 10/353 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG-EEARG 69
           M  AL+ +      T  NP V  +IVKD  V+  G   + G  HAE  A+ +   E+   
Sbjct: 1   MQLALQEACKGRHQTWKNPLVGAVIVKDNHVLATGYHHHFGERHAERDAISKLTPEQLFN 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           +T YVTLEPC+H+G+ PPC+Q I+   I+RVV+   DP   V+G+G+  L + GI +   
Sbjct: 61  STLYVTLEPCNHFGKQPPCSQLIVNKHIKRVVIAQIDPHKLVTGKGIAALKENGIQVATG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++ +E +     Y       +  IT+K A+S D+ + +       IT  +   +VH  RA
Sbjct: 121 ILANEARKLNEHYTYFYETNQPWITVKQAISLDHKVAVRTNQRTKITNDLVYQKVHSERA 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALLAPVI 246
              AI++G  T + D+P L   ++   ++SP+RI+LD   +L   LD K+  T   A   
Sbjct: 181 DYQAIVIGSSTAIIDNPSLLTNVH--TDYSPIRIVLDRRGRLLKHLDLKLF-TDQKAQTW 237

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           I TEN   + +  F  K ++  +     +  ++  L  + + S+ VEGG  +  SF+++ 
Sbjct: 238 IFTENKS-LSSHPFNNKFVHCFFSKNDSIGAMINELKNQELQSIYVEGGPTLEKSFLDNY 296

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
           LV+ +I Y +  ++G  G+ +     +   +F  V+ D   ++V ++   +N+
Sbjct: 297 LVNELITYIAPDLLGANGVSAVSPSSF--HHFSDVKIDKLNNNVRIDERKQNV 347


>gi|190891194|ref|YP_001977736.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhizobium etli
           CIAT 652]
 gi|190696473|gb|ACE90558.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
           [Rhizobium etli CIAT 652]
          Length = 455

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 147/270 (54%), Positives = 190/270 (70%), Gaps = 1/270 (0%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M V+  D  FM+AA+R SR H+G T+TNPSV CLIVKDG+++G+ VTA GG PHAE QAL
Sbjct: 1   MSVTPDDEGFMAAAIRLSRQHLGRTATNPSVGCLIVKDGVIVGQAVTALGGRPHAEPQAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAG+ ARGATAYVTLEPCSH+G++PPCA+ +I  G+ RVV+ V DPD RVSGRG+  L 
Sbjct: 61  AEAGQLARGATAYVTLEPCSHHGKTPPCAEALIAYGVARVVISVTDPDPRVSGRGITMLR 120

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI VD  ++E+EG+  L  YLTRQ + R ++TLK+AVS D MIG  G G V ITG  +
Sbjct: 121 DAGIEVDAGVLEAEGRRSLAGYLTRQTKNRPYVTLKLAVSADGMIGRQGEGQVAITGPEA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           + +V  LRA++DAILVGIGT ++DDP LT R  GL+  SP+RI+LDP   L L SK++ T
Sbjct: 181 RAEVQALRAETDAILVGIGTAISDDPLLTVRTPGLEAQSPIRIVLDPSLALPLTSKLVAT 240

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIY 269
           A   PVI+V   +   LA        +++ 
Sbjct: 241 AREVPVILVASENVSHLAADAEGIPPSVLP 270



 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/132 (34%), Positives = 62/132 (46%), Gaps = 3/132 (2%)

Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
           DP  +L L +         P       D            + I+YC+    + LL  L  
Sbjct: 325 DPADRLELRTPGRAEGGTTPT---DAADLDSRRAVLVAAGVEIVYCNPYHPEVLLPALAT 381

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           RG++SLLVEGGA  A  F+ + LVD I LY++ +VIGEGGI SPL+   +   F  +   
Sbjct: 382 RGISSLLVEGGAKTARLFLEAGLVDRIELYQAPVVIGEGGIESPLDATDIPSGFTHMGTQ 441

Query: 345 YFGSDVCLEYIG 356
            FG D   EY  
Sbjct: 442 MFGVDRLDEYER 453


>gi|307326834|ref|ZP_07606026.1| riboflavin biosynthesis protein RibD [Streptomyces violaceusniger
           Tu 4113]
 gi|306887597|gb|EFN18591.1| riboflavin biosynthesis protein RibD [Streptomyces violaceusniger
           Tu 4113]
          Length = 369

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 116/363 (31%), Positives = 175/363 (48%), Gaps = 16/363 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62
           ++ +A+ M  A+  +   +G TS NP V C+I+   G V+G G     G PHAEV AL  
Sbjct: 3   TAAEAQAMRHAVALAARGLGHTSPNPVVGCVILDAGGRVVGEGWHQRAGGPHAEVHALRA 62

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ ARG TA VTLEPC H GR+ PC+Q +I  GI RV   V DP  +  G      +  
Sbjct: 63  AGDRARGGTALVTLEPCDHTGRTGPCSQALIAAGIARVHYAVGDPTAQARGGAATLAAAG 122

Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
             +   ++  E +     +LT     R  +  K A + D     A   S  IT   S+  
Sbjct: 123 VEVEAGLLAEEAEAVNEPWLTAMRRGRPFVLWKFAATLDGRSAAADGTSRWITSPESRAD 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LRA++DA++VG GT  ADDP L  R        P+R+++D    +   ++I+  A  
Sbjct: 183 VHRLRAEADAVVVGSGTQRADDPHLAVRDREGVT-QPLRVVVDTAATIKPGARILDDA-- 239

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAV 298
           AP ++    D     L  R   +  +     D    +  LL  L GRGV S+L+EGG  +
Sbjct: 240 APTLLAVAEDASTAHLPRRP-GVETVRLPRADGGLAIPALLAELHGRGVRSVLLEGGPTL 298

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLE 353
           A +F+ +  VD +I Y + +++G G  P+ L +  +      +R         G D+ + 
Sbjct: 299 AGAFLAAGAVDKVIGYLAPVLLGAG--PAALADAGITTIAQALRLATADVTRLGPDLRVT 356

Query: 354 YIG 356
            + 
Sbjct: 357 AVP 359


>gi|256787680|ref|ZP_05526111.1| riboflavin-specific deaminase [Streptomyces lividans TK24]
          Length = 405

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 126/385 (32%), Positives = 188/385 (48%), Gaps = 33/385 (8%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
           V+  +   M  AL  +   VG T +NP+V C+++  +G  +  GV    G PHAEV AL 
Sbjct: 17  VAPRELAAMRRALELAGAEVGSTGSNPAVGCVLLDAEGTTVATGVHRGPGTPHAEVDALR 76

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            A    RG TA VTLEPC H GR+ PC++ +IE G+RRV+  V DP+   +G   +    
Sbjct: 77  RARGRHRGTTAVVTLEPCDHQGRTGPCSKALIEAGVRRVLYAVADPNRVAAGGARRLADA 136

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
              +V  ++ +E +  L  +LT     R  +T K A + D     A   +  I+   S+ 
Sbjct: 137 GVEVVGGVLGAEAEAVLEMWLTAVRAGRPFVTWKFAATLDGRSAAADGSARWISSAESRA 196

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
             H LRA+ DA+LVG GT  +DDP L  R +G+  H P+RI LD   +L  DS+++  A 
Sbjct: 197 DAHELRARHDAVLVGSGTWRSDDPRLDLR-HGVVGHPPLRIALDARGELPPDSRLLDGA- 254

Query: 242 LAPVIIVTEND----DPVLALAFRKKNIN----------------IIYCDCR-----DLK 276
            AP ++VT+      D   + +     IN                ++             
Sbjct: 255 -APTLVVTDPATGTADHGESESNNNSGINTSTNTSTSRGANSGPDVLRLKTDARGHFPPL 313

Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS--PLEEGYL 334
            LL  L GRGV S+LVEGG A+A SF+ + LVD ++ Y + +++G  G+ +  PL  G +
Sbjct: 314 DLLAALDGRGVRSVLVEGGPALAASFVRAGLVDRVVAYVAPLLLGSEGVSATGPLGIGSI 373

Query: 335 --EKNFMCVRRDYFGSDVCLEYIGK 357
                F     D  G D+ +E    
Sbjct: 374 REAHRFRITSVDRIGPDLRIELRPP 398


>gi|116617932|ref|YP_818303.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|116096779|gb|ABJ61930.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 344

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 95/323 (29%), Positives = 149/323 (46%), Gaps = 14/323 (4%)

Query: 7   DARFMSAALRFSRWHV-GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D  +M  A   +   +   T  NP V  +IVKDG VI  G     G  HAE+ A      
Sbjct: 3   DLTWMKLAADEAIRAMPYQTFENPRVGAVIVKDGQVITTGYHEKFGEAHAEINAFNRVKN 62

Query: 66  EAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           +    GAT YVTLEPCS  G+   CA  I   G++RVVV   DP+   +G+G++ L   G
Sbjct: 63  KTEFLGATLYVTLEPCSTQGKVGSCAVQIQNWGLKRVVVGSIDPNPSTNGKGIKMLRSAG 122

Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
           I VD +   E K    A+      +  ++ LK+A+SQ+  +         +T  ++   V
Sbjct: 123 ITVDVLNTVENKEINPAFHYFYTTRLPYVQLKLAMSQNGFVAEKFGKRKKLTDELADTDV 182

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  RA   AI++G  T++ D P LT R   +    P+R+++D   +L             
Sbjct: 183 HRERATRSAIMIGSETMITDQPMLTVRHINISHKQPLRVVIDRRGRLQNT----NFDFSN 238

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
             +I TEN           K  + +      LK +L  L  + + S++VEGG ++ HSF+
Sbjct: 239 NWLIYTEN-------VLFSKQHSYVKLMSGALKDILIDLAKQNIQSVMVEGGPSLIHSFL 291

Query: 304 NSRLVDSIILYRSQIVIGEGGIP 326
              L   +++Y +  V+ +  + 
Sbjct: 292 KENLWQEMLIYTTDKVLSKDSLK 314


>gi|188994131|ref|YP_001928383.1| putative riboflavin biosynthesis protein [Porphyromonas gingivalis
           ATCC 33277]
 gi|188593811|dbj|BAG32786.1| putative riboflavin biosynthesis protein [Porphyromonas gingivalis
           ATCC 33277]
          Length = 330

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 115/331 (34%), Positives = 174/331 (52%), Gaps = 18/331 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  ++   G TS NP V  ++V  G +IG G     G PHAEV A+    + 
Sbjct: 4   DPLYMRRAIELAQNAEGFTSPNPLVGAVLVAHGRIIGEGYHHCAGMPHAEVIAINSVRDR 63

Query: 67  A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           A  R +T YV+LEPCSHYG++PPCA+ I+  GI  VVV + DP   VSGRG++ L    +
Sbjct: 64  ALLRESTLYVSLEPCSHYGKTPPCAELILREGIPHVVVAMLDPFPSVSGRGIKMLRDASV 123

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI----GMAGCGSVPITGFIS 179
            +   ++  E +     +LT Q + R ++TLK A S D  I      A    V ++  ++
Sbjct: 124 SVQVGLLAEEAEELNRHFLTAQRQHRPYVTLKWAESSDGFIDALRDDASTPPVRLSTPLT 183

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
              VH  R   DAILVG  T L D+P LT R       +P+R++ D H  L     +   
Sbjct: 184 TRFVHHRRMIHDAILVGFRTALLDNPSLTVR--HWYGRNPLRVVTDRHLALPRHLTLFDG 241

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAA 297
           +   P ++ TE + P    +    +++ +  D     ++++L  L  RG+ SLLVEGGA 
Sbjct: 242 S--VPTLVFTEKEQP----SGYPSSVSFVRIDPSRPPVEQMLAELHARGIQSLLVEGGAC 295

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
           +  SFI+S L D + + RS I++   G+ +P
Sbjct: 296 ILRSFIDSGLYDDVRIERSTIIL-NEGVRAP 325


>gi|21221143|ref|NP_626922.1| riboflavin-specific deaminase [Streptomyces coelicolor A3(2)]
 gi|289771571|ref|ZP_06530949.1| riboflavin biosynthesis protein RibD [Streptomyces lividans TK24]
 gi|8052397|emb|CAB92254.1| riboflavin-specific deaminase [Streptomyces coelicolor A3(2)]
 gi|289701770|gb|EFD69199.1| riboflavin biosynthesis protein RibD [Streptomyces lividans TK24]
          Length = 381

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 185/377 (49%), Gaps = 33/377 (8%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  AL  +   VG T +NP+V C+++  +G  +  GV    G PHAEV AL  A    RG
Sbjct: 1   MRRALELAGAEVGSTGSNPAVGCVLLDAEGTTVATGVHRGPGTPHAEVDALRRARGRHRG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            TA VTLEPC H GR+ PC++ +IE G+RRV+  V DP+   +G   +       +V  +
Sbjct: 61  TTAVVTLEPCDHQGRTGPCSKALIEAGVRRVLYAVADPNRVAAGGARRLADAGVEVVGGV 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           + +E +  L  +LT     R  +T K A + D     A   +  I+   S+   H LRA+
Sbjct: 121 LGAEAEAVLEMWLTAVRAGRPFVTWKFAATLDGRSAAADGSARWISSAESRADAHELRAR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DA+LVG GT  +DDP L  R +G+  H P+RI LD   +L  DS+++  A  AP ++VT
Sbjct: 181 HDAVLVGSGTWRSDDPRLDLR-HGVVGHPPLRIALDARGELPPDSRLLDGA--APTLVVT 237

Query: 250 END----DPVLALAFRKKNIN----------------IIYCDCR-----DLKKLLTILVG 284
           +      D   + +     IN                ++              LL  L G
Sbjct: 238 DPATGTADHGESESNNNSGINTSTNTSTSRGANSGPDVLRLKTDARGHFPPLDLLAALDG 297

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS--PLEEGYL--EKNFMC 340
           RGV S+LVEGG A+A SF+ + LVD ++ Y + +++G  G+ +  PL  G +     F  
Sbjct: 298 RGVRSVLVEGGPALAASFVRAGLVDRVVAYVAPLLLGSEGVSATGPLGIGSIREAHRFRI 357

Query: 341 VRRDYFGSDVCLEYIGK 357
              D  G D+ +E    
Sbjct: 358 TSVDRIGPDLRIELRPP 374


>gi|86159164|ref|YP_465949.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775675|gb|ABC82512.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 392

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 126/357 (35%), Positives = 182/357 (50%), Gaps = 13/357 (3%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           RFM  ALR +   +G TS NP+V  ++V+DG V+GRG  A  G PHAEV AL  AG  AR
Sbjct: 27  RFMRLALREAARGLGRTSPNPAVGAVVVRDGRVVGRGHHARAGGPHAEVVALRAAGALAR 86

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GA  Y TLEPC H+G++PPC+  ++E G+RRV V   DP+  V+GRG+  L + G+ +V 
Sbjct: 87  GADVYTTLEPCDHFGKTPPCSVALLEAGVRRVFVGSSDPNPLVNGRGMARLRRSGVAVVK 146

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++  +       + T   E+R  +TLK AV+ D  I      +  ++G  ++  VH LR
Sbjct: 147 GVLRDDCDRLNAPWFTFITERRPFVTLKAAVTLDGRIATRTGDARWVSGEAARAWVHRLR 206

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            + DA+LVG GT  ADDP LT RL       P+R++LD    L     + +    AP ++
Sbjct: 207 DRVDAVLVGAGTARADDPRLTTRLP-RGGRDPIRVVLDSDLSLPRTLALFRGGSPAPTLV 265

Query: 248 VTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
                            + ++ C       DL+ LL  L  RGV  LLVEGGA V   F+
Sbjct: 266 AHAA---PAPARPYGPGVELLRCRRGKGGVDLRDLLAKLAARGVAHLLVEGGAHVHARFL 322

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLEYIG 356
            + LVD + ++ +  + G  G+P     G            V  +  G DV +  + 
Sbjct: 323 EAGLVDRVAVFVAPKIAGGDGVPLVAGRGPARMADALRLDQVAFERVGDDVLVTGVP 379


>gi|242278131|ref|YP_002990260.1| riboflavin biosynthesis protein RibD [Desulfovibrio salexigens DSM
           2638]
 gi|242121025|gb|ACS78721.1| riboflavin biosynthesis protein RibD [Desulfovibrio salexigens DSM
           2638]
          Length = 377

 Score =  282 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 104/376 (27%), Positives = 182/376 (48%), Gaps = 20/376 (5%)

Query: 1   MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           M  + S D RFM+ A+  +      T+ NP+V  ++V+DG ++  G   + G  HAE + 
Sbjct: 1   MNSTLSPDERFMARAVELAIRGRNRTAPNPTVGAVMVRDGQIVAEGYHMFCGGLHAEREC 60

Query: 60  LEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           + +A   G +    T YVTLEPC+H+G++PPC + I+E  I  +VV   DP+ + +G G+
Sbjct: 61  IADAKAKGVDMSKCTMYVTLEPCNHHGKTPPCTEGILEASIPHIVVGTRDPNPKAAG-GI 119

Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
           ++L  KG+ +   ++E + K  +  +L  Q + R++  LK+A + D  I  A      ++
Sbjct: 120 EYLESKGVRVDQGVLEEQCKDLISDFLCWQFKDRAYSILKLACTVDGKIAGATGAQEAVS 179

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLD 233
              S + V  LR+   A++VG  T+  D+P L CRL+ L E    P  +++  +   + D
Sbjct: 180 CPESFHDVQHLRSMVGAVIVGGNTLREDNPSLNCRLDPLPEGFSQPKAVVVTNNLPQNHD 239

Query: 234 SKIIKTALLAPVIIVT--ENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGR-G 286
              + T   A  I  T  E      A   + K I ++     +    L+K  T+L  +  
Sbjct: 240 EYTLTTTRAADTIFWTSAEQAATKTASELKNKGIEVLPLPSNEKGLILEKGFTMLREKHN 299

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE-GGIPSPLEEGYL----EKNFMCV 341
           V   L EGG  +A S     LVD  ++Y++  ++G   G P+      +      +    
Sbjct: 300 VLRTLCEGGGRLACSLAEQGLVDEFVMYQAPRILGNVDGRPNFAGSDNVLISEAMDLRIS 359

Query: 342 RRDYFGSDVCLEYIGK 357
           R +  G D+ + +  +
Sbjct: 360 RVEQSGRDLKIVFKPE 375


>gi|160900631|ref|YP_001566213.1| riboflavin biosynthesis protein RibD [Delftia acidovorans SPH-1]
 gi|160366215|gb|ABX37828.1| riboflavin biosynthesis protein RibD [Delftia acidovorans SPH-1]
          Length = 369

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 104/310 (33%), Positives = 151/310 (48%), Gaps = 12/310 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GE 65
            M  AL  +   + L+S NP V C++V  DG V+G+G T   G PHAEV AL +A   GE
Sbjct: 7   HMHQALGLAAQALFLSSPNPRVGCVLVAPDGRVVGQGFTQQAGGPHAEVMALRDAVARGE 66

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           + RGATAYVTLEPCSH GR+ PC   +I  G+ +VV  + DP+ +V+G+G   L   G+ 
Sbjct: 67  DVRGATAYVTLEPCSHQGRTGPCCDALIAAGVAKVVGALTDPNPQVAGQGFARLRAAGVD 126

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V      E +     + +R +     + +K A S D    +    S  IT   ++   H
Sbjct: 127 VVVGPGADESRELNIGFFSRMLRGIPWVRMKAASSLDGATALHNGTSQWITSPEARADGH 186

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             RA++  +L GIGTVL DDP L  R +      P   ++D    + L ++ ++    A 
Sbjct: 187 AWRARACTLLTGIGTVLEDDPRLNVR-DVATPRQPRIAVVDSRLDMPLTARALQGP--AE 243

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAH 300
            +I T + D     A +     +I         DL  +L  L  RG   L VE G  +  
Sbjct: 244 CLIYTSSRDASKTSALQDLGATVIPMPNAHGKVDLCAMLRDLAARGTNELHVEAGFKLNG 303

Query: 301 SFINSRLVDS 310
           S +   LVD 
Sbjct: 304 SLVREGLVDE 313


>gi|33866124|ref|NP_897683.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Synechococcus sp. WH 8102]
 gi|33639099|emb|CAE08105.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Synechococcus sp. WH 8102]
          Length = 354

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 112/354 (31%), Positives = 177/354 (50%), Gaps = 12/354 (3%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           +M  AL  +    G TS NP V  +++ ++G ++G G  A  G PHAEV AL +AG  A 
Sbjct: 5   WMRRALALAALAEGRTSPNPLVGAVVLNREGRLVGEGFHARSGEPHAEVGALAQAGTAAA 64

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-IIVD 127
           G T  VTLEPC H+GR+PPC++ +++ G+ RVVV ++DPD RV+G G+  L + G +++ 
Sbjct: 65  GGTLIVTLEPCCHHGRTPPCSRAVLQAGVARVVVALEDPDPRVAGGGIAQLRKAGVVVIT 124

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++  E      A+L R    R    LK A+  D    +    S  I+G  S+  VH LR
Sbjct: 125 GVLRQEAAEQNRAFLHRVRTGRPWGVLKWAMGLDGRTALPNGTSQWISGADSRRWVHQLR 184

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           A  DA++VG GTV ADDP LT R  G ++  P+R++L     L  ++++  TA  A  ++
Sbjct: 185 AGCDAVIVGGGTVRADDPLLTSR--GRRDPEPLRVVLSRGLDLPAEAQLWDTASAA-TLV 241

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
               +          + + +  C+   L   +  L  RG   +L E G+ +A + I    
Sbjct: 242 AHGPEAAGKQAPNGPERLELEQCEPLPL---MQHLAARGCNQVLWECGSELAAAAIRQGC 298

Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           V  +    +  ++G     +PL E      F  + +   G  +    IG +  L
Sbjct: 299 VQEVAAVLAPKLMGGVAARTPLGELG----FTAMDQVLCGQLLPPRPIGDDWLL 348


>gi|148544108|ref|YP_001271478.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Lactobacillus reuteri DSM 20016]
 gi|184153479|ref|YP_001841820.1| riboflavin biosynthesis protein [Lactobacillus reuteri JCM 1112]
 gi|148531142|gb|ABQ83141.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Lactobacillus reuteri DSM 20016]
 gi|183224823|dbj|BAG25340.1| riboflavin biosynthesis protein [Lactobacillus reuteri JCM 1112]
          Length = 352

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 110/345 (31%), Positives = 167/345 (48%), Gaps = 11/345 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL-EEAGE 65
           DA FM  A+  +      T  NP V  ++VK+G V+ RG T   G  HAE  A+ +   +
Sbjct: 3   DAYFMQMAIAEAAKAGNETWKNPRVGAVVVKNGQVLARGHTHEYGGIHAERDAIGKLTPK 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
           + +GAT YVTLEPC+HYG+ PPC+Q II+ GIRRVV+   DP   V+G+G+  L Q+  I
Sbjct: 63  QGQGATLYVTLEPCNHYGKQPPCSQAIIDAGIRRVVIAETDPHKLVTGKGIATLQQQNII 122

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +++   +     Y      +R  +TLK AVS D  +         IT       VH
Sbjct: 123 VKTGVLKEAAQALNPYYDFFYRYQRPWVTLKQAVSLDYRVAAEKGQRTAITNSAVAKMVH 182

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-IKTALLA 243
             R     IL+G  T + D+P L        +  P+RI+LD   +L  +  + + T   A
Sbjct: 183 TERGNFQGILIGSQTAIIDNPTLLTTSP--TKFPPVRIVLDRRGRLKDNPTLHLLTDGQA 240

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P  I TEN       A   K+I + Y     +  +L  L  + + S+ VEGG  V  +F+
Sbjct: 241 PTWIFTENSSLQDQFA---KSIQVFYRRTWSINDILHELGRQEIQSVYVEGGPTVHQAFL 297

Query: 304 NSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345
              L + +I Y +  ++GE G+P   SP +     +    +  + 
Sbjct: 298 RKGLFEELITYLAPQMLGEKGVPGMESPHQLHLAHQEIKVLENNI 342


>gi|189219671|ref|YP_001940312.1| Pyrimidine deaminase and pyrimidine reductase [Methylacidiphilum
           infernorum V4]
 gi|189186529|gb|ACD83714.1| Pyrimidine deaminase and pyrimidine reductase [Methylacidiphilum
           infernorum V4]
          Length = 376

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 106/359 (29%), Positives = 164/359 (45%), Gaps = 37/359 (10%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             S  D  +M  AL+++    GLTS NP+V  ++VK+G +IGRG     G  HAE++A+E
Sbjct: 21  NFSPEDRYWMKEALKWALLGEGLTSPNPAVGAVLVKEGTLIGRGYHRKAGQAHAEIEAIE 80

Query: 62  EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           +A   GE   G+T YVTLEPCS +G++PPC + I++  I RVV    DP+ R   R ++ 
Sbjct: 81  DAKKRGESVAGSTLYVTLEPCSSWGKTPPCTERIVKEKISRVVASSPDPNPRNKPRAVEL 140

Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
           L   G+     +  E       +  R +  +  +  KIA++ D  +         I+G  
Sbjct: 141 LPSLGVDFSWEILEEALFLNRGFYHRILTGKPWVIGKIAMAIDGSLSAGVGEERWISGIA 200

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-SPMRIILDPHFKLSLDSKII 237
           ++   H LR  +DAIL+G  T   D+P LT RL   +    P R+I+     L  D  + 
Sbjct: 201 ARTVAHRLRMIADAILIGAQTARTDNPRLTIRLVDPKGKIQPWRVIVSRSGNLPGDLFLF 260

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
             A     ++  +                         +++L  L  R V  LLVEGGA 
Sbjct: 261 TDAFKERTLLFVK----------------------MPWERVLGELGSRDVGILLVEGGAE 298

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-------RRDYFGSD 349
           V H  I    +  +  + S ++IG+     PLE+   + +F+ V           F  D
Sbjct: 299 VLHQLIKEGWIQEVSFFLSPLIIGKQ----PLEDSSTDASFLSVPLELVNPSWQKFDED 353


>gi|168025673|ref|XP_001765358.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683411|gb|EDQ69821.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 393

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 110/375 (29%), Positives = 180/375 (48%), Gaps = 28/375 (7%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           +  DA +M   +  +R  VG TS NP V C+IVKDG ++GRG     G PHAEV AL EA
Sbjct: 25  TEVDAFYMRMCVDLARQAVGKTSPNPIVGCVIVKDGRIVGRGFHPKAGEPHAEVFALREA 84

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G  A+GATAYV+LEPC+HYGR+PPC+Q +++  ++RVVV V DP+ +V G+G++ L   G
Sbjct: 85  GPLAQGATAYVSLEPCNHYGRTPPCSQALVKAKLKRVVVGVVDPNPQVGGKGIKTLRNAG 144

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +V  + E+       +++ R    R  +TL+ ++S D         S    G  SK  
Sbjct: 145 IEVVVGVEETLCLKANESFMHRMATGRPFVTLRYSMSMDGGFLGNMGLSNAQGGLYSK-- 202

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
              L  ++DA+++    VL DDP+L     G     P+R+IL     L ++SK+  T+  
Sbjct: 203 ---LLQENDAVVITDAAVL-DDPDLLSSEPGA--KQPLRVILARSLDLPVESKVFDTSYA 256

Query: 243 APVIIVTEN-----------DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
             +++  +            D   +    R   ++++  +   L+ +L++    G TS+L
Sbjct: 257 KTLVLADQKSCIDDIQRKSADGKSIEARLRAGGVDVVMMNDLTLENVLSVCYQLGATSVL 316

Query: 292 VEG-GAA-------VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
           ++  G         +    ++      +++  + I +GE                  V  
Sbjct: 317 LDSRGPVSSGLENFLGQQALDEEAAQKVVVQVAPIFLGENRTEPCFRMDSDLVKLERVSS 376

Query: 344 DYFGSDVCLEYIGKN 358
              G DV +E     
Sbjct: 377 HMVGQDVVIEGYFPE 391


>gi|227364534|ref|ZP_03848595.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Lactobacillus reuteri MM2-3]
 gi|325682351|ref|ZP_08161868.1| riboflavin specific deaminase [Lactobacillus reuteri MM4-1A]
 gi|227070371|gb|EEI08733.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Lactobacillus reuteri MM2-3]
 gi|324978190|gb|EGC15140.1| riboflavin specific deaminase [Lactobacillus reuteri MM4-1A]
          Length = 355

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 110/345 (31%), Positives = 167/345 (48%), Gaps = 11/345 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL-EEAGE 65
           DA FM  A+  +      T  NP V  ++VK+G V+ RG T   G  HAE  A+ +   +
Sbjct: 6   DAYFMQMAIAEAAKAGNETWKNPRVGAVVVKNGQVLARGHTHEYGGIHAERDAIGKLTPK 65

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
           + +GAT YVTLEPC+HYG+ PPC+Q II+ GIRRVV+   DP   V+G+G+  L Q+  I
Sbjct: 66  QGQGATLYVTLEPCNHYGKQPPCSQAIIDAGIRRVVIAETDPHKLVTGKGIATLQQQNII 125

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +++   +     Y      +R  +TLK AVS D  +         IT       VH
Sbjct: 126 VKTGVLKEAAQALNPYYDFFYRYQRPWVTLKQAVSLDYRVAAEKGQRTAITNSAVAKMVH 185

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-IKTALLA 243
             R     IL+G  T + D+P L        +  P+RI+LD   +L  +  + + T   A
Sbjct: 186 TERGNFQGILIGSQTAIIDNPTLLTTSP--TKFPPVRIVLDRRGRLKDNPTLHLLTDGQA 243

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P  I TEN       A   K+I + Y     +  +L  L  + + S+ VEGG  V  +F+
Sbjct: 244 PTWIFTENSSLQDQFA---KSIQVFYRRTWSINDILHELGRQEIQSVYVEGGPTVHQAFL 300

Query: 304 NSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345
              L + +I Y +  ++GE G+P   SP +     +    +  + 
Sbjct: 301 RKGLFEELITYLAPQMLGEKGVPGMESPHQLHLAHQEIKVLENNI 345


>gi|258405543|ref|YP_003198285.1| riboflavin biosynthesis protein RibD [Desulfohalobium retbaense DSM
           5692]
 gi|257797770|gb|ACV68707.1| riboflavin biosynthesis protein RibD [Desulfohalobium retbaense DSM
           5692]
          Length = 384

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 108/365 (29%), Positives = 177/365 (48%), Gaps = 19/365 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
           M  A+       G T+ NP V  +I ++G V+  G     G PHAEV+A+ +A   G + 
Sbjct: 1   MQHAVELGETGFGRTAPNPCVGAVITRNGAVMAEGYHTACGAPHAEVEAIAQARAAGVDL 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
              T +VTLEPC+H+GR+PPC + IIE GIR V +   DP+  V G G  +L  +G+ + 
Sbjct: 61  SECTLWVTLEPCNHHGRTPPCTKAIIEAGIRSVGIGTLDPNPHVGGGGTAFLRDQGVEVE 120

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++E   +  +  +L  Q EKR  + LK+A + D  I      S  ++G  ++ +VH L
Sbjct: 121 VGILEPACRDLIADFLLWQQEKRPGVLLKLAATLDGKIATRSGHSAWVSGPEAREEVHGL 180

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF-KLSLDSKIIKTALLAPV 245
           R + D +LVG GT+ AD+P LTCR        P+ +++     +   D  +++      +
Sbjct: 181 RGRVDGVLVGGGTLRADNPRLTCRSERALNKQPLALVVTSRLPEAQDDLHLLRHRPQETI 240

Query: 246 IIVTEN------DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS-LLVEGGAAV 298
              T++       D + AL  R  ++ +      DL+  LT    +G+   +L EGG  +
Sbjct: 241 FWTTDDQSRTPQADALRALGCRIWDLPLTASGMLDLRAGLTHFFDQGLGHTILCEGGGRL 300

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN------FMCVRRDYFGSDVCL 352
           A +     L D + LY +  ++G+      L  G  E +      +   R    G+D+CL
Sbjct: 301 ALALAEQGLADRLRLYLAPKILGD-ATAINLFSGRDELDMGQALPWRFTRSRQVGADMCL 359

Query: 353 EYIGK 357
           E   +
Sbjct: 360 ELRPQ 364


>gi|330823811|ref|YP_004387114.1| riboflavin biosynthesis protein RibD [Alicycliphilus denitrificans
           K601]
 gi|329309183|gb|AEB83598.1| riboflavin biosynthesis protein RibD [Alicycliphilus denitrificans
           K601]
          Length = 370

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 116/356 (32%), Positives = 172/356 (48%), Gaps = 15/356 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA---GE 65
           F++ AL  +   + L++ NP V C+I    G V+G+G T   G PHAEV AL +A   G 
Sbjct: 7   FITQALGLAAQALFLSNPNPRVGCVIASGAGAVLGQGFTQQAGGPHAEVVALRDAAASGN 66

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           + RGATAYVTLEPC+H GR+ PC   +I+ GI RVV  ++DP+  V G+G   L   GI 
Sbjct: 67  DVRGATAYVTLEPCAHQGRTGPCCDALIQAGIGRVVASIEDPNPLVGGQGFARLRAAGID 126

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +       + +     + +R V     + +K A S D +  +A   S  IT   ++   H
Sbjct: 127 VQVGPGAQQSRELNIGFFSRMVRGMPWVRMKAAASLDGVTALANGTSQWITAPAARADGH 186

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             RA++ A+L GIGTVL DDP L  R        P  +++D   +  L +++        
Sbjct: 187 AWRARACAVLTGIGTVLEDDPLLNVREV-ATPRQPHLVVVDSRLQTPLGARLFDVPGR-R 244

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAH 300
           V I   +  P  A A R +   +I         DL  +L  L   GV  L +E G  +  
Sbjct: 245 VFIYAADGHPDRAQALRARGATVIVLPNARGKVDLPAMLRDLGANGVNELHLEAGHKLNG 304

Query: 301 SFINSRLVDSIILYRSQIVIGEG--GIPS--PLEEGYLEKNFMCVRRDYFGSDVCL 352
           SF+   LVD ++LY + +++G G  G+ S  PL+                G D+ L
Sbjct: 305 SFLREGLVDELLLYLAPLLLGSGAHGLASWGPLQALADGVRMEFHGMQQLGPDLRL 360


>gi|227514654|ref|ZP_03944703.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Lactobacillus fermentum ATCC 14931]
 gi|227086963|gb|EEI22275.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Lactobacillus fermentum ATCC 14931]
          Length = 345

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 111/345 (32%), Positives = 158/345 (45%), Gaps = 9/345 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGEEARG 69
           M  AL  +      T  NP V  +IVKDG ++  G     G  HAE  A+ + + E+  G
Sbjct: 1   MQLALAEAAKGGSATWKNPQVGAVIVKDGQLLATGYHHQYGQAHAERDAISKLSNEQLAG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           AT YVTLEPC HYG+ PPC+Q +I+    RVVV   DP   V G+G+  L   GI +   
Sbjct: 61  ATIYVTLEPCFHYGKQPPCSQLLIDSHFARVVVATIDPHQVVGGKGIAQLKAAGIDVEVG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +++ + +     Y     ++R  IT K A+S D  +  A   +  IT   ++  VH  RA
Sbjct: 121 LLKDQAEALNRHYFYFYRQQRPWITAKQALSLDGKVAAAPGQATAITNQAARRLVHQERA 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTALLAPVII 247
              AI+VG GTVLADDP L C    L    P+R+ILD   + L    + + T   AP  +
Sbjct: 181 DYHAIVVGAGTVLADDPRLLCETPQL--FPPVRVILDRAGRLLDYQDRFVFTDASAPTWL 238

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
           VT N            ++ +      D  +LL       + SL VEGG AV      +  
Sbjct: 239 VTTNRAATKVDW--PAHVTVKLLQNGDWPELLDYFKEAELQSLYVEGGPAVLTELFQAVP 296

Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           V+ +I Y    +IG+ G+               V     G D+ +
Sbjct: 297 VNQLITYLDPQIIGDQGLAGAQFPVGTAFTHRTV--TQLGDDIRI 339


>gi|262340928|ref|YP_003283783.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Blattabacterium sp. (Blattella germanica)
           str. Bge]
 gi|262272265|gb|ACY40173.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Blattabacterium sp. (Blattella germanica)
           str. Bge]
          Length = 343

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 104/348 (29%), Positives = 171/348 (49%), Gaps = 18/348 (5%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             FMS A++ ++  +G+TS NP V C+I ++G +I  G     G  HAE  A+     ++
Sbjct: 5   ETFMSRAIQLAKNGLGMTSPNPMVGCVIERNGFIISEGWHYKKGMDHAEAIAINRIKNKS 64

Query: 68  --RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
               +T YVTLEPC H+G + PC   II+  I R+VV + DP  +V G G+Q L + GI 
Sbjct: 65  LFLDSTLYVTLEPCVHFGETSPCVDLIIKNHIPRIVVGIQDPHDKVKGLGIQKLKEYGIE 124

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +++ +++++ +     + T   + R +I LK A S D  IG     ++ I+G  ++   H
Sbjct: 125 VIENVLKNKCRFLNKRFFTFHEKNRPYIILKWAQSHDGFIGSENKKNIWISGTYARQLNH 184

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             RA+ D+ILVG  TVL D+P+L  R       +P+RI +D   K+S    I+       
Sbjct: 185 KWRAEEDSILVGRKTVLNDNPKLNVR--EWFGSNPIRIFIDKKLKISDSHFILDGTQ--K 240

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
            I+ TE          +      I  + + +  +L  L  + + SL+VEGG     SFI 
Sbjct: 241 TIVFTEK----KKENQKNIEYIQISFEGKIINHILNFLYKKNILSLIVEGGKKTLESFIK 296

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
             + D   ++   + + + G+ +P   G + K          GSD+  
Sbjct: 297 ENVWDECRIFVCDVTL-KKGLKAPRIGGEVFKKMN------IGSDLLF 337


>gi|50843212|ref|YP_056439.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           KPA171202]
 gi|50840814|gb|AAT83481.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           KPA171202]
 gi|315106176|gb|EFT78152.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL030PA1]
          Length = 331

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 108/331 (32%), Positives = 165/331 (49%), Gaps = 31/331 (9%)

Query: 27  TNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86
            NP V C+IV +  VIG+G     G PHAEV+AL +AG++ARGATA VTLEPC H GR+ 
Sbjct: 24  PNPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDARGATAVVTLEPCHHTGRTG 83

Query: 87  PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQ 145
           PC+  +++ GI RVV+   DP+   SG   QWL   G+ +V  ++  E       +   Q
Sbjct: 84  PCSHALVDAGIARVVIAQSDPNPVASGGE-QWLRTHGVEVVTGVLSEEATALNADWTFSQ 142

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           + +R  +  K A S D         S  ITG  +++QV L RA+  AI+VG GT LAD+P
Sbjct: 143 IHRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNP 202

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
            LT RL G+  H P+R+++                            +P      R  + 
Sbjct: 203 RLTVRLPGVT-HQPLRVVVGMR-------------------------EPPAGCHLRDDSA 236

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           + ++    D  ++L +L  RGV  + +EGG  +A +F+ + LVD +I + +  V+G+G  
Sbjct: 237 STLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLVDEVIAHMAPTVLGDGRA 296

Query: 326 PS---PLEEGYLEKNFMCVRRDYFGSDVCLE 353
                 +       +F+       G D+ + 
Sbjct: 297 AVVDPTVATLSQAHHFVIDDVTQLGPDIQIH 327


>gi|328881089|emb|CCA54328.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase or
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Streptomyces venezuelae ATCC 10712]
          Length = 417

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 119/354 (33%), Positives = 172/354 (48%), Gaps = 17/354 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D   M  A+  +   +G TS NP V C++    G  +G G     G PHAEV AL EAG 
Sbjct: 66  DITAMRRAVELAARGLGATSPNPVVGCVVTDASGRPVGEGWHQRAGGPHAEVHALREAGA 125

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            ARG TAYVTLEPC+H GR+ PCAQ +IE GI RVV  V DP+   +  G   L   G+ 
Sbjct: 126 LARGGTAYVTLEPCNHTGRTGPCAQALIEAGISRVVYAVGDPNP-QATGGADTLRAAGVD 184

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   ++E E +    A+LT     R  +  K A + D  I  A   S  IT   S+  VH
Sbjct: 185 VRQGLLEDEAEAVNLAWLTSVRRGRPFVRWKYAATLDGRIAAADGTSRWITSAESRADVH 244

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTALLA 243
            LRA++DA++VG GT   DDP L  R        P+R+++D     +   ++++  A   
Sbjct: 245 RLRAEADAVVVGSGTARTDDPHLAVRGIDAAV-QPLRVVVDTEATAVKAGARVLDDA-AP 302

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            +I V E+ D  L    R             +  LL  L  RGV S+L+EGG  +A +F+
Sbjct: 303 TLIAVAEDADTALTDVVRLPRAE----RGLSVPALLDALHARGVRSVLLEGGPTLAGAFV 358

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
            +  VD ++ Y + +++G G  P+ L    +                 G+D+ +
Sbjct: 359 AAGAVDQVVGYLAPVLLGAG--PNALAGAGISTITDALRLDITETVRVGTDLRI 410


>gi|289424953|ref|ZP_06426732.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           SK187]
 gi|289154652|gb|EFD03338.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           SK187]
 gi|313763122|gb|EFS34486.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL013PA1]
 gi|313793372|gb|EFS41430.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL110PA1]
 gi|313800984|gb|EFS42252.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL110PA2]
 gi|313812185|gb|EFS49899.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL025PA1]
 gi|313814722|gb|EFS52436.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL059PA1]
 gi|313828278|gb|EFS65992.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL063PA2]
 gi|313838062|gb|EFS75776.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL086PA1]
 gi|314914448|gb|EFS78279.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL005PA4]
 gi|314917772|gb|EFS81603.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL050PA1]
 gi|314919502|gb|EFS83333.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL050PA3]
 gi|314930094|gb|EFS93925.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL067PA1]
 gi|314957061|gb|EFT01166.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL027PA1]
 gi|314957695|gb|EFT01798.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL002PA1]
 gi|314963428|gb|EFT07528.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL082PA1]
 gi|314968931|gb|EFT13029.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL037PA1]
 gi|315077277|gb|EFT49339.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL053PA2]
 gi|315079956|gb|EFT51932.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL078PA1]
 gi|315097872|gb|EFT69848.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL059PA2]
 gi|315100736|gb|EFT72712.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL046PA1]
 gi|315109263|gb|EFT81239.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL030PA2]
 gi|327451322|gb|EGE97976.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL087PA3]
 gi|327451701|gb|EGE98355.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL092PA1]
 gi|327452164|gb|EGE98818.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL083PA2]
 gi|328752420|gb|EGF66036.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL087PA1]
 gi|328755093|gb|EGF68709.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL025PA2]
          Length = 331

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 108/331 (32%), Positives = 164/331 (49%), Gaps = 31/331 (9%)

Query: 27  TNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86
            NP V C+IV +  VIG+G     G PHAEV+AL +AG++ARGATA VTLEPC H GR+ 
Sbjct: 24  PNPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDARGATAVVTLEPCHHTGRTG 83

Query: 87  PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQ 145
           PC+  +++ GI RVV+   DP+   SG   QWL   G+ +V  ++  E       +   Q
Sbjct: 84  PCSHALVDAGIARVVIAQSDPNPVASGGE-QWLRTHGVEVVTGVLSEEATALNADWTFSQ 142

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           + +R  +  K A S D         S  ITG  +++QV L RA+  AI+VG GT LAD+P
Sbjct: 143 IHRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNP 202

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
            LT RL G+  H P+R+++                            +P      R  + 
Sbjct: 203 RLTVRLPGVT-HQPLRVVVGMR-------------------------EPPAGCHLRDDSA 236

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           + ++    D  ++L +L  RGV  + +EGG  +A +F+ + LVD +I + +  V+G G  
Sbjct: 237 STLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLVDEVIAHMAPTVLGGGRA 296

Query: 326 PS---PLEEGYLEKNFMCVRRDYFGSDVCLE 353
                 +       +F+       G D+ + 
Sbjct: 297 AVVDPTVATLSQAHHFVIDDVTQLGPDIQIH 327


>gi|327405290|ref|YP_004346128.1| riboflavin biosynthesis protein RibD [Fluviicola taffensis DSM
           16823]
 gi|327320798|gb|AEA45290.1| riboflavin biosynthesis protein RibD [Fluviicola taffensis DSM
           16823]
          Length = 347

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 103/353 (29%), Positives = 174/353 (49%), Gaps = 25/353 (7%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D ++M  AL+ ++      + NP V  +IV +  +IG G     G  HAEV A+    
Sbjct: 2   NLDEKYMLRALQLAKSGGISVAPNPLVGAVIVHNQQIIGEGYHQKYGEAHAEVNAVNSVK 61

Query: 65  EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           ++     +T YVTLEPCSH+G++PPCA  ++    +RVV+   DP   V+GRG++ L   
Sbjct: 62  DKSLLSESTIYVTLEPCSHFGKTPPCADLLVHSQFKRVVIAQIDPFSEVAGRGIEKLKNA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG-----MAGCGSVPITG 176
           GI +   ++ESE K     ++T   +KR  ITLK A ++D  I          G   I+ 
Sbjct: 122 GIQVDCGILESEAKELNKRFITFHTKKRPFITLKWAQTKDGFIDRDRSQDKEIGINWISQ 181

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
             ++   H +R+   AILVG  T+  D+P LT R+      +P+RII+DP+ K   ++ I
Sbjct: 182 PETQVITHQMRSTEQAILVGWKTIQNDNPSLTTRV--FTGPNPIRIIIDPNLKAPKNATI 239

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
               L    ++  + ++  +       +I  +  +  D K +L  L    + S+++EGGA
Sbjct: 240 FTDGL--KTVVFNKTEEKTI------NSIQYVRLESIDSKSILRKLHELQINSVIIEGGA 291

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
                FI+S   D  ++     ++GE    + ++   L +  +  +   FG D
Sbjct: 292 FTLTQFIDSSNWDEALI-----IVGENQFKTGIKAPILPQ--IPYKSIQFGKD 337


>gi|319763925|ref|YP_004127862.1| riboflavin biosynthesis protein ribd [Alicycliphilus denitrificans
           BC]
 gi|317118486|gb|ADV00975.1| riboflavin biosynthesis protein RibD [Alicycliphilus denitrificans
           BC]
          Length = 370

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 116/356 (32%), Positives = 172/356 (48%), Gaps = 15/356 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA---GE 65
           F++ AL  +   + L++ NP V C+I    G V+G+G T   G PHAEV AL +A   G 
Sbjct: 7   FITQALGLAAQALFLSNPNPRVGCVIASGAGAVLGQGFTQQAGGPHAEVVALRDAAASGN 66

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           + RGATAYVTLEPC+H GR+ PC   +I+ GI RVV  ++DP+  V G+G   L   GI 
Sbjct: 67  DVRGATAYVTLEPCAHQGRTGPCCDALIQAGIGRVVASIEDPNPLVGGQGFARLRAAGID 126

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +       + +     + +R V     + +K A S D +  +A   S  IT   ++   H
Sbjct: 127 VQVGPGAQQSRELNIGFFSRMVRGMPWVRMKAAASLDGVTALANGTSQWITAPAARADGH 186

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             RA++ A+L GIGTVL DDP L  R        P  +++D   +  L +++        
Sbjct: 187 AWRARACAVLTGIGTVLEDDPLLNVREV-ATPRQPHLVVVDSRLQTPLGARLFDVPGR-R 244

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAH 300
           V I   +  P  A A R +   +I         DL  +L  L   GV  L +E G  +  
Sbjct: 245 VFIYAADGPPDRAQALRARGATVIVLPNARGKVDLPAMLRDLGANGVNELHLEAGHKLNG 304

Query: 301 SFINSRLVDSIILYRSQIVIGEG--GIPS--PLEEGYLEKNFMCVRRDYFGSDVCL 352
           SF+   LVD ++LY + +++G G  G+ S  PL+                G D+ L
Sbjct: 305 SFLREGLVDELLLYLAPLLLGSGAHGLASWGPLQALADGVRMEFHGMQQLGPDLRL 360


>gi|261749554|ref|YP_003257240.1| riboflavin biosynthesis protein RibD [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497647|gb|ACX84097.1| riboflavin biosynthesis protein RibD [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 347

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 106/344 (30%), Positives = 168/344 (48%), Gaps = 16/344 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE--EA 67
           FM  A++ ++  +GLTS NP V CLI ++G+++  G     G  HAEV A+         
Sbjct: 7   FMYRAIQLAKNGLGLTSPNPMVGCLIERNGLILSEGWHYKVGMDHAEVNAINRVENTSLL 66

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
             +T YVTLEPC H+G++PPC   II+  I RVV+ + DP  +V+G G+Q L + GI ++
Sbjct: 67  TDSTLYVTLEPCVHFGKTPPCVDLIIKSKIPRVVIGIQDPCHKVNGLGIQKLRENGIEVI 126

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM----AGCGSVPITGFISKNQ 182
           + ++  + +I    + T   +KR +I LK A S D  +             I+G  S+  
Sbjct: 127 ENVLRDQCRILNKRFFTFYEKKRPYIILKWAQSDDGFMDSLKRNEKKKPSWISGIYSRQL 186

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H  R++ D+ILVG  TV  D+P+L  R        P+RI +D    +S    I+     
Sbjct: 187 SHKWRSEEDSILVGRKTVFNDNPKLDVR--EWFGSDPIRIFMDRKLSISASYFILDGTK- 243

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
              I+ TE          +      I  D   +K +   L  + + SL+VEGG     SF
Sbjct: 244 -KTIVFTEK----KKENQKNTEFVQISFDKEIIKNIFNYLYQKNILSLIVEGGRMTLESF 298

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
           I + + D   ++   I + + G+ +P+ +G + KN     RD  
Sbjct: 299 IKANIWDESRIFICNIFL-KDGLKAPVIDGRVIKNMYIGERDKL 341


>gi|78212460|ref|YP_381239.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Synechococcus sp. CC9605]
 gi|78196919|gb|ABB34684.1| riboflavin biosynthesis protein RibD [Synechococcus sp. CC9605]
          Length = 349

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 108/352 (30%), Positives = 176/352 (50%), Gaps = 13/352 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  AL  +    G TS NP V  +++  +G ++G G  A  G  HAEV AL +AG+ A+G
Sbjct: 1   MRRALALAALAEGHTSPNPLVGAVVLDCEGRLVGEGFHARAGDAHAEVGALRQAGDAAQG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
            T  VTLEPC H+GR+PPC++ ++  GI RVV+ ++DPD RV G G++ L Q G+ ++  
Sbjct: 61  GTLVVTLEPCCHHGRTPPCSEAVLRAGIGRVVIALEDPDPRVDGGGIRQLRQAGLEVISG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++  E +    A+L R    R    LK A+S D    +    S  I+G  +++ VH LR+
Sbjct: 121 VLREEARQQNRAFLHRVRTGRPFGILKWAMSLDGRTALPNGASQWISGPPARDWVHRLRS 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
             DA++VG GTV  DDP LT R  G +   P+R++L     L   +++  TA+   ++  
Sbjct: 181 GMDAVVVGGGTVRGDDPLLTSR--GRRSPEPLRVVLSRSLDLPDQAQLWDTAVAPTLVAH 238

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
               DP    +   +    +     + ++L+  L  RG   +L E G  +A + I    V
Sbjct: 239 GPEADPQRLPSGPDE----LVLSACEPEQLMEALAQRGCNQVLWECGPELAAAVIRQGCV 294

Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVCLEYI 355
             I    +  ++G     +PL + +       +     + +  G+D  L + 
Sbjct: 295 QEIAAVVAPKLMGGMPARTPLGDLHFSAMDQVLQGQWHQSEPVGNDWLLRWR 346


>gi|282855094|ref|ZP_06264426.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes J139]
 gi|282581682|gb|EFB87067.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes J139]
          Length = 331

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 107/331 (32%), Positives = 165/331 (49%), Gaps = 31/331 (9%)

Query: 27  TNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86
            NP V C+IV +  VIG+G     G PHAEV+AL +AG++ARGATA VTLEPC H GR+ 
Sbjct: 24  PNPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDARGATAVVTLEPCHHTGRTG 83

Query: 87  PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQ 145
           PC+  +++ GI RVV+   DP+   SG   QWL   G+ +V  ++  E       +   Q
Sbjct: 84  PCSHALVDAGIARVVIAQSDPNPVASGGE-QWLRTHGVEVVTGVLSEEATALNADWTFSQ 142

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           + +R  +  K A S D         S  ITG  +++QV L RA+  AI+VG GT LAD+P
Sbjct: 143 IHRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNP 202

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
            LT RL G+  H P+R+++                            +P      R  + 
Sbjct: 203 RLTVRLPGVT-HQPLRVVVGMR-------------------------EPPAGCHLRDDSA 236

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           + ++    D  ++L +L  RGV  + +EGG  +A +F+ + L+D +I + +  V+G G +
Sbjct: 237 STLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLIDEVIAHMAPTVLGGGRV 296

Query: 326 PS---PLEEGYLEKNFMCVRRDYFGSDVCLE 353
                 +       +F+       G D+ + 
Sbjct: 297 AIVDPTVATLSQAHHFVIDDVTQLGPDIQIH 327


>gi|124268129|ref|YP_001022133.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Methylibium petroleiphilum PM1]
 gi|124260904|gb|ABM95898.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Methylibium petroleiphilum PM1]
          Length = 377

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 112/364 (30%), Positives = 175/364 (48%), Gaps = 19/364 (5%)

Query: 12  SAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
           + ALR +   +GL+  NP V C+I   DG ++  G T   G  HAEV AL  A   G   
Sbjct: 10  ALALRNANEAIGLSDPNPRVGCVITAPDGRLLASGHTQRAGSAHAEVSALRAAQAAGHTV 69

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           RG TA+VTLEPCSH+GR+PPC   ++E G+  V+V + DP+  V+G G+  L   GI V 
Sbjct: 70  RGGTAWVTLEPCSHHGRTPPCCDALVEAGVAHVMVALQDPNPLVAGHGIGRLRAAGIDVT 129

Query: 128 RMMESEGKIF-----LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
            +   +            +L+R + +R  + LKIA S D    +    S  ITG  ++  
Sbjct: 130 VLAPGDPVAIAARELNIGFLSRMLRQRPWVRLKIAASLDGRTALDNGLSQWITGDAARTD 189

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H  R ++ A+L GIGTV+ DDP L  RL       P R+++D    ++LD++I+     
Sbjct: 190 GHAYRKRAGAVLTGIGTVIDDDPRLDVRLVD-TVLQPCRVVVDSKLDIALDARILSPPGE 248

Query: 243 APVIIVT--ENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGA 296
             V   +              ++ ++++ C       DL  +L  L  R +  L VE G+
Sbjct: 249 RLVYTASALARHAAPKVRELAEQGVSVLACANADGKVDLGAMLDDLARREINELHVEAGS 308

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG---GIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
            ++ SF+ + LVD  ++Y + +++G G       PL           V  +  G+D+ L 
Sbjct: 309 KLSGSFVRAGLVDEFLVYLAPLMLGAGREMARFGPLTALTEGLALEFVSVERVGADLRLI 368

Query: 354 YIGK 357
               
Sbjct: 369 ARPP 372


>gi|319778563|ref|YP_004129476.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Taylorella
           equigenitalis MCE9]
 gi|317108587|gb|ADU91333.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Taylorella
           equigenitalis MCE9]
          Length = 379

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 105/333 (31%), Positives = 156/333 (46%), Gaps = 14/333 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG-----E 65
           M  A   S     L   NP V C+IV +  +IG G T   G  HAE+ AL++A      +
Sbjct: 1   MRLAYEASLKTRFLPDPNPCVGCVIVHNDEIIGEGATQIAGSHHAEIMALKDARMRGHED 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
               A  YVTLEPCSH+GR+PPC   +I  GI+ VV+   DP+  V G G++ L   GI 
Sbjct: 61  LIADAILYVTLEPCSHFGRTPPCTDALISNGIKHVVIASPDPNPIVGGNGIRILRSNGIK 120

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +    M  E       + +R +     +  KIA S D  I +    S  IT   S+N  H
Sbjct: 121 VEVGFMLEEVLELNLGFFSRMIRGTPWVRTKIASSLDGRISLTNGQSKWITCEESRNDGH 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             RA+S  +L G GTVLAD+P+L  R       +P+  I+D    + +    +       
Sbjct: 181 YWRARSSIVLTGAGTVLADNPKLNVRHFN-TPRAPLIGIVDRELNI-ITKPKLSIFSNPK 238

Query: 245 VIIVTENDD-PVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAV 298
           V +  E      L L    +NI ++   C D     L +LL  L    V  + +E G+ +
Sbjct: 239 VYVFGEMAKVQDLGLVDLSENIELVGLGCLDDGKLNLSELLEFLNSLQVNEIHLEAGSGL 298

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             SF  + L+D ++ Y++ +V+G    P  ++E
Sbjct: 299 NTSFYEAGLIDELLWYQAPLVLGNCNSPFNIKE 331


>gi|325288196|ref|YP_004263986.1| riboflavin biosynthesis protein RibD [Cellulophaga lytica DSM 7489]
 gi|324323650|gb|ADY31115.1| riboflavin biosynthesis protein RibD [Cellulophaga lytica DSM 7489]
          Length = 350

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 102/359 (28%), Positives = 170/359 (47%), Gaps = 26/359 (7%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
            +++   ++ ++  +G T  NP V  LIV +  +IG G T+  G  HAEV A+    ++ 
Sbjct: 5   EKYILRCIQIAKNGLGSTFPNPMVGALIVHNNAIIGEGFTSPYGGSHAEVNAINSIKDKS 64

Query: 67  -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
             + +T YVTLEPCSHYG++PPCA  II+  I  +V+ + DP  +V+G G++ L   G  
Sbjct: 65  VLKESTIYVTLEPCSHYGKTPPCADLIIKHKIPNIVIGLKDPHEKVAGNGIKKLRAAGCN 124

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM------AGCGSVPITGFI 178
           +   ++E E +   + +L    +KR +I LK A + D  I        A      IT   
Sbjct: 125 VTIGVLEEECREHHNRFLCFYEKKRPYIILKWAETNDGFIAPLQEKRSATPEPFWITTKA 184

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++  VH  R++   ILVG  T++ D+P+L  R       SP RII+D + K+     I+ 
Sbjct: 185 ARQLVHQWRSEEQGILVGTNTIIEDNPKLDVR--NWHGKSPTRIIIDQNLKIDASKNILN 242

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL--LTILVGRGVTSLLVEGGA 296
           T+     I++T+  +    L    + I     + +    +    IL    + S+++EGG+
Sbjct: 243 TS--VKTIVITKESNKNEQL----QGIIYESVNFKKPLAMQICNILHKHNILSVIIEGGS 296

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
               +FIN  L D   ++         GI +P   G L+        +   +D    Y 
Sbjct: 297 KTLQTFINENLWDEARVFTGTTNF-NKGIAAPKFTGKLK------STNTIKTDTLKTYY 348


>gi|332662070|ref|YP_004444858.1| riboflavin biosynthesis protein RibD [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332330884|gb|AEE47985.1| riboflavin biosynthesis protein RibD [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 351

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 113/342 (33%), Positives = 164/342 (47%), Gaps = 21/342 (6%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
           R+++     +R   G  S NP V  ++V D  +IG G     G  HAEV AL       R
Sbjct: 7   RYITRCFDLARMGAGSVSPNPMVGAVLVYDNKIIGEGYHQKYGGAHAEVNALASVSLSNR 66

Query: 69  G----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                +T YV+LEPC  +G++PPC   II+  I RVV+   D    V GRG++ L   GI
Sbjct: 67  PLIPESTLYVSLEPCCIFGKTPPCTNLIIQEKIPRVVISCLDLTPEVKGRGVELLRAHGI 126

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++E EG+           ++R ++ LK+A++ +            IT  ++K  V
Sbjct: 127 EVTTGVLEKEGQALAATRNVSVSQQRPYVILKMAITSNGYFAPLDRSQFWITQTLTKRLV 186

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  R +SDAILVG  T L DDP+L  RL      SP+RI+LD   +L    K+       
Sbjct: 187 HRWRMESDAILVGTTTALMDDPQLDNRL--YYGKSPLRIVLDRRLQLPNSLKVFSDGQ-- 242

Query: 244 PVIIVTENDDPV-LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           P +I+TE +  +  A      ++N       DL  +L      GV  +LVEGG  V  S 
Sbjct: 243 PTLIITEREKSINSASHLHYLSMNFGETFWPDLLAILWREYKLGV--ILVEGGQKVLSSL 300

Query: 303 INSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMC 340
           I++ L D      ++++IG+     GIPSP   G  EKN   
Sbjct: 301 IDTGLWDE-----ARVLIGQKSLTVGIPSPTLPGSPEKNLKL 337


>gi|94986602|ref|YP_594535.1| pyrimidine reductase, riboflavin biosynthesis [Lawsonia
           intracellularis PHE/MN1-00]
 gi|94730851|emb|CAJ54213.1| Pyrimidine reductase, riboflavin biosynthesis [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 382

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 100/371 (26%), Positives = 172/371 (46%), Gaps = 26/371 (7%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE---A 67
           M  A+  +      T+ NP V  +++++G ++  G  +  G PHAEV  + +A  +    
Sbjct: 13  MKYAISIAEKGRWDTAPNPVVGSVLIQNGKIVAEGFHSLYGGPHAEVLCINDAKNKHINL 72

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
              T   TLEPC+HYG++PPC + II+  I+ V++   DP   ++  G+  L+  GI + 
Sbjct: 73  SDCTLITTLEPCNHYGKTPPCTKAIIDNNIKHVIIGTKDP-TTLASGGVHTLTSAGITVE 131

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++E E +  +  ++T Q   R +I LK+A + D  I  +   S  I+  +S+ +VH L
Sbjct: 132 VGILEKECQALIADFITWQNTSRPYILLKLATTLDGKIATSTGHSKWISSEVSRQKVHKL 191

Query: 187 RAQS----DAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKTA 240
           R        AIL+G  T+  D+P+LTCR N        P+ II+        D  +  + 
Sbjct: 192 RENVGKVGGAILIGGNTLKLDNPQLTCRNNNNNNKIQQPLAIIITSTLPEQQDIYLFNSR 251

Query: 241 LLAPVIIVT-ENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGR-----GVTSLLV 292
               +I  T ++     A   RKK + I+       DL  +LT +        G   +L 
Sbjct: 252 PTETIIYTTPQSGSTQQATTLRKKGVKIVTLKNWSPDLSAILTDITEHIRSTQGCLYMLC 311

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG------YLEKNFMCVRRDYF 346
           EGG  +  S + + LVD + +Y S  ++G+     P+  G      +   +      +  
Sbjct: 312 EGGGKLGSSLLKANLVDELHIYLSPKILGDNNA-LPIVNGRNPLTIHDAISLKIHTMELS 370

Query: 347 GSDVCLEYIGK 357
           GSD+ L +  +
Sbjct: 371 GSDIHLTFRPE 381


>gi|150019955|ref|YP_001305309.1| riboflavin biosynthesis protein RibD [Thermosipho melanesiensis
           BI429]
 gi|149792476|gb|ABR29924.1| riboflavin biosynthesis protein RibD [Thermosipho melanesiensis
           BI429]
          Length = 337

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 107/349 (30%), Positives = 168/349 (48%), Gaps = 21/349 (6%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            ++M  A+  S+  +G  S NP V  +IVK+G +IG G     G  HAE  A+  A E+ 
Sbjct: 2   EKYMKLAIELSKKGIGKVSPNPLVGAVIVKNGKIIGMGYHERYGGFHAERNAILNAKEDV 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           +G++ +V LEPCSH+G++ PC   II  GI +V +   DP+  V+G+G++ L + GI VD
Sbjct: 62  KGSSLFVNLEPCSHHGKNLPCVDLIISSGISKVYIASVDPNPLVNGKGIEKLKKNGIEVD 121

Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             ++  E K     +     +K  ++ LK+A++ D  I  +   S  IT   + N  H L
Sbjct: 122 VGLLSDEAKYLNRVFFKYITKKLPYVALKVALTLDGFIADSNGNSKWITK-QNFNVSHSL 180

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R    +ILVG  TVL D+P LTCR  G    +P+RI+LD    ++L          A  I
Sbjct: 181 RNFFSSILVGANTVLKDNPRLTCRNGG---RNPVRIVLDRDG-ITLGRGFNVYNEEARTI 236

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           + +           +         +  D   +L+ L   G+ S+L+EGGA+V   F+   
Sbjct: 237 VFS--------KCCQGTLECYPETEPFD---ILSRLYNLGIDSVLIEGGASVLSQFL--N 283

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKN--FMCVRRDYFGSDVCLE 353
             D + L+ S  + G G  P      ++ +N  F          +  LE
Sbjct: 284 FADELHLFYSTKIFGRGLSPFENIIKFVSQNMEFKIRNLKRLEDEFYLE 332


>gi|47497547|dbj|BAD19619.1| putative riboflavin biosynthesis protein ribD [Oryza sativa
           Japonica Group]
 gi|47847589|dbj|BAD21976.1| putative riboflavin biosynthesis protein ribD [Oryza sativa
           Japonica Group]
          Length = 622

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 99/358 (27%), Positives = 166/358 (46%), Gaps = 26/358 (7%)

Query: 23  GLTSTNPSVACLIVK--------DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYV 74
           GLTS +P+  C+I +        +  V+G G     G P AE+ A +EAGE ARGATAY+
Sbjct: 69  GLTSPHPNFGCVIARPQLETDNAEAWVVGEGFLYAQGTPCAELLAAQEAGEHARGATAYL 128

Query: 75  TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
            LEP   YG S   +  +++ GI RVVV +  P   + G+ +Q L  +GI VD + E   
Sbjct: 129 NLEPGDCYGDSTAVST-LVQAGITRVVVGLRHPLKHLRGKAIQSLRNEGIQVDVVGEDLH 187

Query: 135 KI-----------FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
                             L R   +     LK A++ D  I  +   +  ++G  S+ +V
Sbjct: 188 SKLFKEALKSCLIVNAPLLYRAAFRVPFSVLKYAMTADGKIAASSGHASWVSGKSSRGRV 247

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
             LR +SDAI+VG  TV  DDP LT R   ++ H P+RI++     L  ++ +       
Sbjct: 248 FELRGRSDAIIVGGNTVRLDDPRLTAR--HVKGHVPVRIVMSQSLNLPEEANLWNVHDAY 305

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            ++         L      K + ++  D  + + +++    RG  S+L E G  +A S I
Sbjct: 306 TIVATQRGARRDLQKKLALKGVEVVEFDMLNPRDVMSYCYDRGYLSVLWECGGTLAASAI 365

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           ++ ++  +  + +  +IG    P+P+ E  + +    +       DV  E I +++ +
Sbjct: 366 SASVIHKVYAFLAPKIIGGVNAPTPVGELGMNQMTQAIDLI----DVSYEQIDRDMLM 419


>gi|289427738|ref|ZP_06429450.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes J165]
 gi|289159229|gb|EFD07421.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes J165]
 gi|313808724|gb|EFS47178.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL087PA2]
 gi|313817904|gb|EFS55618.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL046PA2]
 gi|313819816|gb|EFS57530.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL036PA1]
 gi|313823306|gb|EFS61020.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL036PA2]
 gi|313824948|gb|EFS62662.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL063PA1]
 gi|314925876|gb|EFS89707.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL036PA3]
 gi|314960753|gb|EFT04854.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL002PA2]
 gi|314979409|gb|EFT23503.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL072PA2]
 gi|314986170|gb|EFT30262.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL005PA2]
 gi|314988782|gb|EFT32873.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL005PA3]
 gi|315083284|gb|EFT55260.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL027PA2]
 gi|315086943|gb|EFT58919.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL002PA3]
 gi|315089869|gb|EFT61845.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL072PA1]
 gi|327325060|gb|EGE66866.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL096PA3]
 gi|327449258|gb|EGE95912.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL013PA2]
 gi|328756397|gb|EGF70013.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL020PA1]
          Length = 331

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 107/331 (32%), Positives = 163/331 (49%), Gaps = 31/331 (9%)

Query: 27  TNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86
            NP V C+IV +  VIG+G     G PHAEV+AL +AG++ RGATA VTLEPC H GR+ 
Sbjct: 24  PNPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDVRGATAVVTLEPCHHTGRTG 83

Query: 87  PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQ 145
           PC+  +++ GI RVV+   DP+   SG   QWL   G+ +V  ++  E       +   Q
Sbjct: 84  PCSHALVDAGIARVVIAQSDPNPVASGGE-QWLRTHGVEVVTGVLSEEATALNADWTFSQ 142

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           + +R  +  K A S D         S  ITG  +++QV L RA+  AI+VG GT LAD+P
Sbjct: 143 IHRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNP 202

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
            LT RL G+  H P+R+++                            +P      R  + 
Sbjct: 203 RLTVRLPGVT-HQPLRVVVGMR-------------------------EPPAGCHLRDDSA 236

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           + ++    D  ++L +L  RGV  + +EGG  +A +F+ + LVD +I + +  V+G G  
Sbjct: 237 STLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLVDEVIAHMAPTVLGGGRA 296

Query: 326 PS---PLEEGYLEKNFMCVRRDYFGSDVCLE 353
                 +       +F+       G D+ + 
Sbjct: 297 AVVDPTVATLSQAHHFVIDDVTQLGPDIQIH 327


>gi|2766596|gb|AAB95439.1| homologue of Bacillus subtilis ribG [Shigella flexneri]
          Length = 245

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 102/244 (41%), Positives = 139/244 (56%), Gaps = 12/244 (4%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL  AGE
Sbjct: 2   QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +M SE +     +L R      +I LK+  S D    MA   S  IT   ++  V 
Sbjct: 122 VSHGLMMSEPEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233
             RAQS AIL    TVLADDP LT R + L E             P+RI++D   +++ +
Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPE 241

Query: 234 SKII 237
            +I+
Sbjct: 242 HRIV 245


>gi|239905200|ref|YP_002951939.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Desulfovibrio magneticus RS-1]
 gi|239795064|dbj|BAH74053.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Desulfovibrio magneticus RS-1]
          Length = 381

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 108/374 (28%), Positives = 178/374 (47%), Gaps = 24/374 (6%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
             DA FM+ AL  +    G  + NP V  ++V+DG ++  G     G PHAEV+ L EA 
Sbjct: 4   DNDAVFMARALELAERGRGFVTPNPRVGAVLVRDGAIVAEGWHKVFGGPHAEVECLREAE 63

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
             G +  GAT YVTLEPC+H+G++PPC++ ++E G+ RVV+   DP+  V+G G + L Q
Sbjct: 64  ERGIDPAGATMYVTLEPCNHFGKTPPCSRTVLEAGVSRVVIGCLDPNP-VAGGGAETLRQ 122

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            G+ +   ++  E +  +  ++  +   R ++TLK+A++ D  I      S  ++G  S+
Sbjct: 123 GGVAVDVGILGQECRDAVADFVVYKTMGRPYVTLKLAMTLDGRIAARTGDSAWVSGPESR 182

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----HSPMRIILDPHFKLSLDSKI 236
            +VH +RA S A++VG GT  ADDP LT RL  +        P+ +++        D++ 
Sbjct: 183 RRVHRMRAASQAVMVGGGTFRADDPRLTHRLEVVDPLSGNPQPLAVVVTRSLP-PADARF 241

Query: 237 IKTALLAPVIIVTEN---DDPVLALAFRKKNINIIYCDCRDLKKL-----LTILVGR-GV 287
                 +P ++   +         LA  K+ + +     RD  +L     LT L     V
Sbjct: 242 ALVRERSPSLVFLTSEAEARAAAGLALAKRGVRVYGLPLRDEGELDLLPGLTRLRDEARV 301

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE-GGIPSP----LEEGYLEKNFMCVR 342
             LL EGG  +A   +   L D + L+ +  V+ +   +P      +        F    
Sbjct: 302 FRLLCEGGGGLAGQLVAQGLADELALFYAPKVLADAEAVPGFSGRIIPRMADAAGFRFCG 361

Query: 343 RDYFGSDVCLEYIG 356
               G D+ +    
Sbjct: 362 LRQVGEDILVTARP 375


>gi|171779591|ref|ZP_02920547.1| hypothetical protein STRINF_01428 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281693|gb|EDT47127.1| hypothetical protein STRINF_01428 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 351

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 118/361 (32%), Positives = 175/361 (48%), Gaps = 21/361 (5%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63
            D  +MS A+  ++     T TNP V  +IVKD  VI RG     G  HAE  A+     
Sbjct: 1   MDNYYMSQAIAEAKKGFRQTYTNPLVGAVIVKDNHVIARGAHLQYGHEHAEKNAILHCQT 60

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            EE   +T YVTLEPC H G+ PPC Q I+  GI++VVV   DP+  V+G+GL +L ++G
Sbjct: 61  PEELVDSTLYVTLEPCHHRGKQPPCTQAILAAGIKKVVVGQLDPNPLVAGKGLAFLKEEG 120

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +V  ++E E +     Y      +R ++ LK AVS D  I +       +T   +   
Sbjct: 121 IEVVTGVLEEEARGLNSHYNFYYENQRPYVVLKQAVSLDGKIAVL-GKRTALTDAETNRF 179

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL--DSKIIKTA 240
           VH  R    AILVG  TVL D+P L     G   +  +R+ILD   ++    D +I  T 
Sbjct: 180 VHDERDDYQAILVGADTVLIDNPRLL--GAGTSLYPIVRVILDEAGRVFERRDLQIF-TD 236

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
             AP++I +++      +     ++ +I      +  +L +L    + S+ VEGGAAV  
Sbjct: 237 DSAPILIFSKH-----KVTDLPSHVKVIDLPEFSIANILRVLYDEKIQSVYVEGGAAVHD 291

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
           +F++S L D II Y +  +IG  G  +         +F  V       D   + IG  + 
Sbjct: 292 AFLDSGLWDEIISYVTPKLIGGNGKAA-------MSSFRLVEEVLELQDFSCQKIGNTIR 344

Query: 361 L 361
           L
Sbjct: 345 L 345


>gi|89070868|ref|ZP_01158107.1| riboflavin biosynthesis protein RibD [Oceanicola granulosus
           HTCC2516]
 gi|89043556|gb|EAR49766.1| riboflavin biosynthesis protein RibD [Oceanicola granulosus
           HTCC2516]
          Length = 362

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 124/365 (33%), Positives = 187/365 (51%), Gaps = 13/365 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++  D RFM+ AL   R  +G T  NPSV C++V+DG ++ R  TA GG PHAE++AL  
Sbjct: 1   MNEADGRFMALALGLGRQGLGRTWPNPSVGCVLVRDGRILARARTADGGRPHAEMRALAA 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A  + RGATAYVTLEPC+H G +P CA  +   G+ RVV+   D D R +G+G+  L   
Sbjct: 61  A--DPRGATAYVTLEPCAHVGETPACASELARAGVARVVIGCADADARTAGQGVAILRAA 118

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +   + E+E +     +L+R    R  +TLK+A S D  I  A   S  ITG  ++ 
Sbjct: 119 GVAVTTGVREAEARALHAGFLSRVERGRPALTLKLAASLDGRIATATGESQWITGTEARR 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH LRA+ DA++VG GT  ADDP LT R  G+    P+R+++     L  D ++  TA 
Sbjct: 179 HVHALRARHDAVMVGAGTARADDPALTVRGLGI-ARQPVRVVVSRRLDLPRDGRLAATAR 237

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGA 296
             P+ +    D    + A  +     +     D      + +L  L   G+TS+  EGG 
Sbjct: 238 DVPLWLCHGPDAAAASRAAWEAAGARLLPCAVDHGQLAPESVLAALGAAGLTSVFCEGGG 297

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +A S + + LVD ++ Y + +V+G  G+P      ++       F        G D+  
Sbjct: 298 GLAASLLAADLVDELVAYSAGLVLGAEGLPMVGAMGVDALAAAPRFHLAETTPIGGDLLH 357

Query: 353 EYIGK 357
            +   
Sbjct: 358 RWRRD 362


>gi|295131277|ref|YP_003581940.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           SK137]
 gi|291375861|gb|ADD99715.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           SK137]
 gi|313773159|gb|EFS39125.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL074PA1]
 gi|313810307|gb|EFS48023.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL083PA1]
 gi|313830202|gb|EFS67916.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL007PA1]
 gi|313833124|gb|EFS70838.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL056PA1]
 gi|314972940|gb|EFT17036.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL053PA1]
 gi|314975459|gb|EFT19554.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL045PA1]
 gi|314984254|gb|EFT28346.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL005PA1]
 gi|315096643|gb|EFT68619.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL038PA1]
 gi|327325313|gb|EGE67118.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL096PA2]
 gi|327443828|gb|EGE90482.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL043PA1]
 gi|327449140|gb|EGE95794.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL043PA2]
 gi|328761071|gb|EGF74621.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL099PA1]
          Length = 331

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 107/331 (32%), Positives = 163/331 (49%), Gaps = 31/331 (9%)

Query: 27  TNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86
            NP V C+IV +  VIG+G     G PHAEV+AL +AG++ARGATA VTLEPC H GR+ 
Sbjct: 24  PNPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDARGATAVVTLEPCHHTGRTG 83

Query: 87  PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQ 145
           PC+  +++ GI RVV+   DP+   SG   QWL   G+ +V  ++  E       +   Q
Sbjct: 84  PCSHALVDAGIARVVIAQSDPNPVASGGE-QWLRTHGVEVVTGVLSEEATALNADWTFSQ 142

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           + +R  +  K A S D         S  IT   +++QV L RA+  AI+VG GT LAD+P
Sbjct: 143 IHRRPRVCWKYAASLDGRSAAPDGTSQWITAEQARHQVQLGRARCGAIIVGTGTALADNP 202

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
            LT RL G+  H P+R+++                            +P      R  + 
Sbjct: 203 RLTVRLPGVT-HQPLRVVVGMR-------------------------EPPAGCHLRDDSA 236

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           + ++    D  ++L +L  RGV  + +EGG  +A +F+ + LVD +I + +  V+G G  
Sbjct: 237 STLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLVDEVIAHMAPTVLGGGRA 296

Query: 326 PS---PLEEGYLEKNFMCVRRDYFGSDVCLE 353
                 +       +F+       G D+ + 
Sbjct: 297 AVVDPTVATLSQAHHFVIDDVTQLGPDIQIH 327


>gi|159044799|ref|YP_001533593.1| riboflavin biosynthesis protein [Dinoroseobacter shibae DFL 12]
 gi|157912559|gb|ABV93992.1| riboflavin biosynthesis protein [Dinoroseobacter shibae DFL 12]
          Length = 365

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 125/362 (34%), Positives = 191/362 (52%), Gaps = 13/362 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA 63
           S D R+M  AL   R  +G +  NP+V C++V  +G V+GRG T  GG PHAEV AL +A
Sbjct: 2   SDDLRWMQVALTLGRRGLGQSWPNPAVGCVLVAPNGRVVGRGRTQSGGRPHAEVVALAQA 61

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G  ARGATAYVTLEPC+H+G++ PC   +I  G+ RVV  ++DPD RV+G+G   L   G
Sbjct: 62  GAAARGATAYVTLEPCAHHGQTGPCCDALIAAGVGRVVTALEDPDPRVAGQGHSRLRAAG 121

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + + + +  +  +     +L R    R  +TLK+A++ D  I  A   S  ITG  ++  
Sbjct: 122 VAVTEGVGRAAAREDQLGFLNRVTLGRPMVTLKLALTLDGRIATARGESQWITGAEARRY 181

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT-AL 241
            H LRA+ DA+L+G GT   DDP LT R  G+    P+R++      + + S++ ++   
Sbjct: 182 GHALRARHDAVLIGAGTARTDDPTLTVRGVGV-VRQPVRVVASRDLDVPIPSRLSQSVTA 240

Query: 242 LAPVIIVTENDDPVLALAFRK----KNINI-IYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
            APV +    + P   +A  +    K + +    +   ++ LL  L  RG+T +  EGG 
Sbjct: 241 DAPVWLCHGGEAPAERIARARAAGLKCVEVAAEAEGVSVESLLRTLAQRGLTRVYCEGGG 300

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCL 352
           A A   + +  VD + ++ +  VIG  G+P   + G         F  +     G DV  
Sbjct: 301 AFAAGLLRAGCVDRLAVFSAGCVIGADGLPGLGDLGVNLLADAPRFRRLGVRQVGGDVLT 360

Query: 353 EY 354
           E+
Sbjct: 361 EW 362


>gi|314982172|gb|EFT26265.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL110PA3]
 gi|315090403|gb|EFT62379.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL110PA4]
          Length = 331

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 107/331 (32%), Positives = 165/331 (49%), Gaps = 31/331 (9%)

Query: 27  TNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86
            NP V C+IV +  VIG+G     G PHAEV+AL +AG++ARGATA VTLEPC H GR+ 
Sbjct: 24  PNPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDARGATAVVTLEPCHHTGRTG 83

Query: 87  PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQ 145
           PC+  +++ GI RVV+   DP+   SG   QWL   G+ +V  ++  E       +   Q
Sbjct: 84  PCSHALVDAGIARVVIAQSDPNPVASGGE-QWLRTHGVEVVTGVLSEEATALNADWTFSQ 142

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           + +R  +  K A S D         S  ITG  +++QV L RA+  AI+VG GT LAD+P
Sbjct: 143 IHRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNP 202

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
            LT RL G+  H P+R+++                            +P      R  + 
Sbjct: 203 RLTVRLPGVT-HQPLRVVVGMR-------------------------EPPAGCHLRDDSA 236

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           + ++    D  ++L +L  RGV  + +EGG  +A +F+ + L+D +I + +  V+G G +
Sbjct: 237 STLHIPSHDPAEVLDLLCCRGVHRVWLEGGPQLAGAFLAANLIDEVIAHMAPTVLGGGRV 296

Query: 326 PS---PLEEGYLEKNFMCVRRDYFGSDVCLE 353
                 +       +F+       G D+ + 
Sbjct: 297 AIVDPTVATLSQAHHFVIDDVTQLGPDIQIH 327


>gi|329768554|ref|ZP_08260041.1| riboflavin biosynthesis protein RibD [Gemella haemolysans M341]
 gi|328836595|gb|EGF86254.1| riboflavin biosynthesis protein RibD [Gemella haemolysans M341]
          Length = 356

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 112/363 (30%), Positives = 174/363 (47%), Gaps = 16/363 (4%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG--E 65
             FM+ AL  ++     T TNP V  +IVKD  ++ RG     GC HAE  A+      E
Sbjct: 3   EYFMNLALLEAKRGAKYTHTNPLVGAIIVKDNKIVARGSHLRYGCEHAEKNAISTCKTPE 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +   +T YVTLEPC+H G+ PPC + I++ GI +VVV   DP+  VSG+G+++L   GI 
Sbjct: 63  KIFNSTLYVTLEPCNHKGKQPPCTEAILKMGISKVVVAQLDPNPIVSGKGIKFLRDNGIE 122

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   ++E E     +AY     +KR ++ LK A S D  +         ITG    + V 
Sbjct: 123 VTTGILEKEAYNLNYAYNLFHTQKRPYVVLKQATSLDGKLAFTN-ERTQITGKEVYDFVR 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALL 242
             R    AILVG  TVL D+P+LT        + P RIILD    +    +  + K    
Sbjct: 182 KERDNYQAILVGAKTVLIDNPKLT--GASTSLYPPKRIILDKEGTIFQHKELNLFKDDS- 238

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           + VI+ ++  +  L       ++ II  +   +K++LT +   G+ S+ VEGG  +   F
Sbjct: 239 SEVIVFSKYKNEDL-----PSHVTIITPNEFTIKEILTEIAKLGIQSVYVEGGPCIHDQF 293

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK--NFMCVRRDYFGSDVCLEYIGKNLC 360
           + S   D +I Y S  ++G     S   +    +      +     G D+ +    ++ C
Sbjct: 294 LASGYWDEVISYISPTLLGGSNTSSFNSDRTTNEKITLHDINVTKLGEDIRISGRKESQC 353

Query: 361 LQE 363
           LQ+
Sbjct: 354 LQD 356


>gi|170750355|ref|YP_001756615.1| riboflavin biosynthesis protein RibD [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656877|gb|ACB25932.1| riboflavin biosynthesis protein RibD [Methylobacterium
           radiotolerans JCM 2831]
          Length = 369

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 141/364 (38%), Positives = 189/364 (51%), Gaps = 13/364 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYGGCPHAEVQALEEAG 64
           DA FM  AL   R  +G T  NPSV  ++V+   G ++G   TA GG PH E  AL  AG
Sbjct: 4   DANFMRLALALGRRGLGTTWPNPSVGAVVVEPGTGRILGTAATAQGGRPHGEPVALAAAG 63

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E ARGAT YVTLEPCSH+GR+PPC   I+  GI RVV  ++DPD RV+GRG   L + G+
Sbjct: 64  EAARGATLYVTLEPCSHHGRTPPCTDAILAAGIARVVSALEDPDPRVAGRGHDLLRRGGV 123

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   +M  E       ++TR    R  + LK+A ++D     AG   + ITG ++   V
Sbjct: 124 AVETGLMRDEAARDHVGHVTRVTRGRPALHLKLARTRDGFCAAAGPERLRITGPVADGAV 183

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           HL RA +DAIL+GIGT  ADDP LT RL GL   SP+R++LD H +LS  S + +TA   
Sbjct: 184 HLWRAHADAILIGIGTARADDPSLTVRLPGLGARSPLRVVLDTHLRLSPASVLARTARDT 243

Query: 244 PVIIVTENDDPVLA-LAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAA 297
           P +++T    P  A  A     + +           DL   LT L  RG+T L  EGG  
Sbjct: 244 PTLVLTTRSAPAHARRALEALGVAVATVPADPAGGIDLPAALTHLGERGLTRLCSEGGPR 303

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           +A +   + L+D+  L    + +G  G    +   L E      F    R   G D  + 
Sbjct: 304 LAEALARADLIDACTLVTGPMALGPAGGLRALGPALAEALSGDRFREAERLQLGPDAAVT 363

Query: 354 YIGK 357
           Y   
Sbjct: 364 YERN 367


>gi|153845346|ref|ZP_01993762.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           AQ3810]
 gi|149745121|gb|EDM56372.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           AQ3810]
          Length = 280

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 100/263 (38%), Positives = 146/263 (55%), Gaps = 13/263 (4%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P S  D   MS AL+ +R  +  T+ NP+V C+IV+DG+++G G     G PHAEV A+ 
Sbjct: 9   PFSPQDFSMMSRALKLARRGIYTTAPNPNVGCVIVRDGVIVGEGYHHRAGEPHAEVHAMR 68

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG++A GATAYVTLEPCSHYGR+PPCA+ +I+  + RVV  ++DP+ +V+GRG+Q L +
Sbjct: 69  MAGDKAEGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMEDPNPKVAGRGIQMLRE 128

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            G+ +   ++E++       ++         I LK+A S D    ++   S  IT   ++
Sbjct: 129 AGVEVQVGLLENDAIELNRGFIKFMQTGMPFIQLKMAASLDGQSALSNGKSQWITSPQAR 188

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFK 229
             V   RAQS  IL    TVL D+  L  R + L +             P R+ILD   K
Sbjct: 189 QDVQCYRAQSGGILSTSKTVLDDNASLNVRWDDLPQSVQAHYELTEVRQPARVILDRQQK 248

Query: 230 LSLDSKIIKTALLAPVIIVTEND 252
           LS D K+  T     +I+ +E D
Sbjct: 249 LSDDLKLFSTEGE-RIIVSSEGD 270


>gi|160872316|ref|ZP_02062448.1| riboflavin biosynthesis protein RibD [Rickettsiella grylli]
 gi|159121115|gb|EDP46453.1| riboflavin biosynthesis protein RibD [Rickettsiella grylli]
          Length = 360

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 102/353 (28%), Positives = 156/353 (44%), Gaps = 9/353 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-E 66
            +++  AL  +    G  S NP V  ++VKD  VI +G     G PHAEV+A++      
Sbjct: 6   RQYLELALSLAEIRRGFCSPNPCVGAILVKDNTVIAKGYHHASGLPHAEVEAIQSVNPVH 65

Query: 67  ARGATAYVTLEPCSHYGR-SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            +GAT YVTL+PC H  + +PPC   II+ GI +V+    DP+  VS      L   GI 
Sbjct: 66  VKGATLYVTLQPCCHSAKKTPPCTDLIIKSGIVKVIYGFQDPNPAVSHHTDNLLKHAGIE 125

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
             +        F  +Y+     KR   T K+A+S D  I       V +TG  ++   H 
Sbjct: 126 CIQHALPAIDNFYASYVYWWTCKRPFTTAKLALSLDGKIAGKNGKRVQLTGEKAQQFTHH 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            R ++DAIL    T+  DDP L  RL+      P+ I LD H  LS  SKI ++A  +  
Sbjct: 186 HRKKADAILTTAKTISHDDPLLNSRLDHKIYKKPLYI-LDTHLNLSTTSKIFESA-ASVT 243

Query: 246 IIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           I    +   V     ++ +   I      +  +L  +   +   G   L VE G  +  +
Sbjct: 244 IFHHSSVCKVYQFKEQQPDTRFIPIKHDKNGLNLIAVFDHIGLDGKIDLWVEAGGHLFQA 303

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
            I + L+    +Y +   +GE    +      L+K    ++    G D C E+
Sbjct: 304 LIQNNLLQHAFIYVAPRWLGENAQTAFHFPNPLKKGI-PMKGITLGRDTCFEF 355


>gi|327332327|gb|EGE74063.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL097PA1]
          Length = 331

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 107/331 (32%), Positives = 163/331 (49%), Gaps = 31/331 (9%)

Query: 27  TNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86
            NP V C+IV +  VIG+G     G PHAEV+AL +AG++ARGATA VTLEPC H GR+ 
Sbjct: 24  PNPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDARGATAVVTLEPCHHTGRTG 83

Query: 87  PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQ 145
           PC+  +++ GI RVV+   DP+   SG   QWL   G+ +V  ++  E       +   Q
Sbjct: 84  PCSHALVDAGIARVVIAQSDPNPVASGGE-QWLRTHGVEVVTGVLSEEATALNADWTFSQ 142

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           + +R  +  K A S D         S  ITG  +++QV L RA+  AI+VG GT LAD+P
Sbjct: 143 IHRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNP 202

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
            LT RL G+  H P+R+++                            +P      R  + 
Sbjct: 203 RLTVRLPGVT-HQPLRVVVGMR-------------------------EPPAGCHLRDDSA 236

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           + ++    D  ++L +L  RGV  + +EGG  +A +F+ + LVD +I + +  V+G G  
Sbjct: 237 STLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLVDEVIAHMAPTVLGGGRA 296

Query: 326 PS---PLEEGYLEKNFMCVRRDYFGSDVCLE 353
                 +       + +       G D+ + 
Sbjct: 297 AVVDPTVATLSQAHHLVIDDVTQLGPDIQIH 327


>gi|145640611|ref|ZP_01796194.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae R3021]
 gi|145274537|gb|EDK14400.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
           22.4-21]
          Length = 250

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 96/249 (38%), Positives = 140/249 (56%), Gaps = 12/249 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           +  SS D  FM  AL  +      T+ NPSV C++VK+G ++G G     G PHAE  AL
Sbjct: 2   LEFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVAL 61

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +AGE ++GATAYVTLEPCSHYGR+PPCA  +IE G+ +V+  + DP+ +V+G+GL+ LS
Sbjct: 62  AQAGENSKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLS 121

Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             GI     ++  + +     +L R  +    + LK+A+S D    MA   S  ITG  +
Sbjct: 122 DAGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDA 181

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228
           ++ V  +RA+S A+L    TV+ADDP L  R +   E             P+R+ILD   
Sbjct: 182 RSDVQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQH 241

Query: 229 KLSLDSKII 237
           ++    K+ 
Sbjct: 242 RIQPTHKLF 250


>gi|162452084|ref|YP_001614451.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Sorangium cellulosum 'So ce 56']
 gi|161162666|emb|CAN93971.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Sorangium cellulosum 'So ce 56']
          Length = 381

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 117/363 (32%), Positives = 178/363 (49%), Gaps = 17/363 (4%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQAL 60
           P    DA  M  A+  +   +   S NP V  +++   G V+     A  G  HAE  AL
Sbjct: 8   PDPELDAAMMRLAIEEAHKAMP--SPNPPVGAVVLNAAGEVVAVAHHARAGEEHAEGLAL 65

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AG+ ARG T YVTLEPC+H GR+PPC   ++  GI+RVVV   DP+  V G G Q LS
Sbjct: 66  AAAGDAARGGTLYVTLEPCNHEGRTPPCVDAVLSAGIKRVVVGAPDPNPSVVGGGAQRLS 125

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             G+ +   +  +E +  +  +         HI LK+A+S D  I      S  +TG  +
Sbjct: 126 DAGLAVDVGVAGAEARALIAPWTKFITTGIPHIALKLALSLDGRIATRTGASKWVTGPEA 185

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKII 237
           + +V  LR++ DA+ +GIGT LADDP LT R + L     SP+R++ D   +L L +++ 
Sbjct: 186 RAKVQELRSRHDAVAIGIGTALADDPRLTLRESALAPGGRSPIRLVFDTRLRLPLHTRLA 245

Query: 238 KTALLAPVIIVTENDDPVLALA-FRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLL 291
           +TA   P  ++T  D P  A          ++          D+   + +   +G+ S+L
Sbjct: 246 QTAREVPTWVLTGADAPEEAEQVLVDAGCVVLRAPTSAEGRVDVTAAMRLCASQGIVSIL 305

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL-----EEGYLEKNFMCVRRDYF 346
           VEGGA +A S + SRL D +  + + I++G  G P  +     +        +  R +  
Sbjct: 306 VEGGAELAGSLLASRLPDELHAFVAPILLGPRGRPGAVDWAGPDTPGDAPRIVDPRWELC 365

Query: 347 GSD 349
           G D
Sbjct: 366 GRD 368


>gi|298209105|ref|YP_003717284.1| riboflavin biosynthesis protein RibD [Croceibacter atlanticus
           HTCC2559]
 gi|83849032|gb|EAP86901.1| riboflavin biosynthesis protein RibD [Croceibacter atlanticus
           HTCC2559]
          Length = 333

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 102/352 (28%), Positives = 161/352 (45%), Gaps = 35/352 (9%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--A 67
           ++   L+ ++  +G T  NP V  +IV D  +IG G     G  HAEV A+    ++   
Sbjct: 7   YIKRCLQLAKKGLGTTYPNPMVGSVIVYDNKIIGEGWHQIAGLAHAEVNAINAVKDKSLL 66

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           + +T YV+LEPCSHYG++PPCA  II   I  VV+   DP  +V G+G++ L   G  I 
Sbjct: 67  KKSTIYVSLEPCSHYGKTPPCADLIIANNIPNVVIGTVDPFAKVKGQGIKKLLDAGCKIT 126

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV---PITGFISKNQV 183
             ++E E +     + T    KR +I LK A S D  +            IT  +S+  V
Sbjct: 127 VGVLEDECQELNKRFFTFHNSKRPYIILKWAESNDAFLAPKTKHKQQPVWITNLVSRQLV 186

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  RA+  AILVG  TV  D+P LT R       +P R+++D    L     ++     A
Sbjct: 187 HKWRAEEQAILVGTKTVKDDNPSLTTR--DWNGPNPTRLVIDRKNVLDKSLSVLND--KA 242

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK-LLTILVGRGVTSLLVEGGAAVAHSF 302
             ++ +EN                   +  +L + +        + S++VEGGA     F
Sbjct: 243 ETVVFSENTS-----------------NFNNLPQHICEYCHTNNLQSIIVEGGAQTLQHF 285

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           IN+ L D   +++  ++  E G  +PL  G +      + ++   +D    Y
Sbjct: 286 INANLWDEARVFKGDVMFYE-GTKAPLITGSI------IHKETLQNDTLTIY 330


>gi|304570589|ref|YP_388926.2| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 373

 Score =  279 bits (713), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 100/369 (27%), Positives = 166/369 (44%), Gaps = 27/369 (7%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
           FM  A+  +      TS NP V  ++VKDG  + RG     G PHAE++ L +A   G  
Sbjct: 10  FMLEAVALAEKGRWATSPNPCVGAVLVKDGQTVARGWHTAYGKPHAEIECLRDAARRGVN 69

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
               T  VTLEPC+H G++PPC+  +++ GIR VVV + DP+  V+  G  +L + G+ +
Sbjct: 70  PAECTLVVTLEPCNHTGKTPPCSIAVLQAGIRHVVVGMMDPNP-VAQGGANFLRENGVTV 128

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +   E +  +  ++T +     +  +K+A + D  I      S  I+G  S+ +VH 
Sbjct: 129 ETGVCRQECEDVVDDFITWKKTPLPYTIIKLASTLDGRIATRTGHSRWISGEESRRRVHE 188

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS----KIIKTAL 241
           LR  +DA++VG GT  AD+P+LTCRL G++   P+ +++        D+     +++   
Sbjct: 189 LRRHADAVIVGGGTFRADNPQLTCRLEGIR-RQPLAVVVTSQL---PDAGAPMHLLQQRP 244

Query: 242 LAPV------IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVEG 294
              +      +  +E  D + AL  R   ++       DL   L  L         L EG
Sbjct: 245 HETIFWTPRAVAASEKADALRALGVRVTGLDRNCKGRLDLHTALAGLRSEYDCYHTLCEG 304

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK------NFMCVRRDYFGS 348
           G  +A S +   +   + L+ +  ++       PL +G                    G 
Sbjct: 305 GGMLALSMLEMNVAQELELHMAPKLL-ADAQARPLFDGRTPSTMEQALGLRICNVARSGE 363

Query: 349 DVCLEYIGK 357
           DV L    +
Sbjct: 364 DVILTLRPR 372


>gi|314927222|gb|EFS91053.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL044PA1]
          Length = 331

 Score =  278 bits (712), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 110/355 (30%), Positives = 169/355 (47%), Gaps = 35/355 (9%)

Query: 6   FDARF---MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            D R+   M+ AL  +         NP V C+IV D  VIG+G     G PHAE++AL +
Sbjct: 1   MDQRWDAAMTLALNMAGKS-PCPDPNPRVGCVIVADERVIGQGWHRGAGTPHAEIEALRQ 59

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ ARGATA VTLEPC+H GR+ PC+  +++ GI RVV+   DP+   SG   QWL   
Sbjct: 60  AGDGARGATAVVTLEPCNHTGRTGPCSHALLDAGITRVVIAQPDPNPAASGGE-QWLRAH 118

Query: 123 GIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+     +  E        +   Q+ +R  +  K A S D         S  ITG  +++
Sbjct: 119 GVEAVTGVLGEKATTLNADWTFSQIHRRPRVCWKYAASLDGRSAAPDGTSQWITGKEARH 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           QV L R++  AI++G GT LADDP L  RL G+    P+R+++     L  D  +   + 
Sbjct: 179 QVQLGRSRCGAIVIGTGTALADDPRLVVRLPGVP-RQPLRVVVGLR-DLPADCHLRDDS- 235

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            AP +                      +    D  ++L  L  RG+  + +EGG  +A +
Sbjct: 236 -APTL----------------------HIRSHDPVEVLDQLWHRGIHRVWLEGGPRLAGA 272

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLE 353
           F+ + LVD +I + + +V+G+G        +       +F+       G D+ + 
Sbjct: 273 FLAADLVDEVIAHLAPMVLGDGRAAVIDPTVTSLSQAHHFVIDDVTRLGPDIQIH 327


>gi|163755421|ref|ZP_02162541.1| riboflavin biosynthesis protein RibD [Kordia algicida OT-1]
 gi|161324841|gb|EDP96170.1| riboflavin biosynthesis protein RibD [Kordia algicida OT-1]
          Length = 340

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 93/330 (28%), Positives = 163/330 (49%), Gaps = 17/330 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--AR 68
           M   L+ +   +     NPSV  +IV + ++IG G T+  G  HAEV A+    ++   +
Sbjct: 1   MKRCLQLAANGLPTAMPNPSVGAIIVHNDMIIGEGYTSAYGGNHAEVNAVHSVKDKSLLK 60

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
            AT YV+LEPCSH+G++PPC+  II+  I +VV+   DP  +V+G+G++ L   G  ++ 
Sbjct: 61  EATMYVSLEPCSHFGKTPPCSDLIIKHQIPKVVIGTIDPFAKVAGKGIEKLQNAGCEVIL 120

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV-----PITGFISKNQ 182
            +++ E       + T    KR ++ LK A +QD  I      +       IT   S+  
Sbjct: 121 NVLKDECIASNKRFFTFHQHKRPYVILKWAETQDGFIDKIRQENDPVQPNWITNKFSRQL 180

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  R++  AILVG  T + D+P+L  R       +P+RI+LD   ++  +  +    + 
Sbjct: 181 VHKWRSEETAILVGTNTAITDNPKLNTR--DWHGKNPVRIVLDRSLRIPENYSLFDQTI- 237

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
              I++TE    V   +        I       +++  +L    + S+++EGG     +F
Sbjct: 238 -KTIVLTE----VEKASTENLIFETIDFSENLAQQICNVLFQHELQSVIIEGGKQTLQTF 292

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
           +++ L D   +++  I+  + GI +P   G
Sbjct: 293 MDANLWDEARVFKGNILF-QQGIKAPKLTG 321


>gi|300727427|ref|ZP_07060836.1| riboflavin biosynthesis protein RibD [Prevotella bryantii B14]
 gi|299775307|gb|EFI71906.1| riboflavin biosynthesis protein RibD [Prevotella bryantii B14]
          Length = 320

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 112/360 (31%), Positives = 162/360 (45%), Gaps = 49/360 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
           M   S D ++M   +  +R  +     NPSV  +IV  D  +IG G T+  G PHAEV A
Sbjct: 1   MNQKSIDEKYMRRCIAIARNGLNSAKPNPSVGAVIVSADNRIIGEGYTSSYGGPHAEVNA 60

Query: 60  LEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
                 E       AT YV+LEPCSHYG++PPCA  ++  G++R V    DP   V GRG
Sbjct: 61  FASVKPEDEHLLADATLYVSLEPCSHYGKTPPCADLVVRKGVKRCVCGCIDPFSEVQGRG 120

Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           ++ L   GI +   ++E E K     + T  +  R +I LK A + +  +G  G   + I
Sbjct: 121 IKKLRDAGIDVTVGVLEKECKASNKRFFTFNMLHRPYIILKWAQTINGFMG--GKDRLHI 178

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           +   ++  VH LRA+ DAIL+G GT+ +D P+L  R       SP RI+L  +       
Sbjct: 179 STPFTQMLVHQLRAECDAILIGRGTLESDHPQLNVR--DWYGPSPERIVLSHNTD----- 231

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
                                         I   +    D+  +LT L      SL+VEG
Sbjct: 232 -----------------------------GIPEGFLAFTDIDSVLTHLYQEKKQSLIVEG 262

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           GA +  +FI + L D I +  S   I   GI SP+    L  +   VR+  +  +    Y
Sbjct: 263 GAQILQAFIEAGLWDEIRIETSPFTI-TEGIKSPI----LPYSAQLVRQKMYDGNRISWY 317


>gi|313835935|gb|EFS73649.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL037PA2]
 gi|314970655|gb|EFT14753.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
           HL037PA3]
 gi|328906122|gb|EGG25897.1| riboflavin biosynthesis protein RibD [Propionibacterium sp. P08]
          Length = 331

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 110/355 (30%), Positives = 169/355 (47%), Gaps = 35/355 (9%)

Query: 6   FDARF---MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            D R+   M+ AL  +         NP V C+IV D  VIG+G     G PHAE++AL +
Sbjct: 1   MDQRWDAAMTLALNMAGKS-PCPDPNPRVGCVIVADERVIGQGWHRGAGTPHAEIEALRQ 59

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG+ ARGATA VTLEPC+H GR+ PC+  +++ GI RVV+   DP+   SG   QWL   
Sbjct: 60  AGDGARGATAVVTLEPCNHTGRTGPCSHALLDAGITRVVIAQPDPNPAASGGE-QWLRAH 118

Query: 123 GIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+     +  E        +   Q+ +R  +  K A S D         S  ITG  +++
Sbjct: 119 GVEAVTGVLGEKATTLNADWTFSQIHRRPRVCWKYAASLDGRSAAPDGTSQWITGKEARH 178

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           QV L R++  AI++G GT LADDP L  RL G+    P+R+++     L  D  +   + 
Sbjct: 179 QVQLGRSRCGAIVIGTGTALADDPRLVVRLPGVT-RQPLRVVVGLR-DLPADCHLRDDS- 235

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            AP +                      +    D  ++L  L  RG+  + +EGG  +A +
Sbjct: 236 -APTL----------------------HIRSHDPVEVLDQLWHRGIHRVWLEGGPRLAGA 272

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLE 353
           F+ + LVD +I + + +V+G+G        +       +F+       G D+ + 
Sbjct: 273 FLAADLVDEVIAHLAPMVLGDGRAAVIDPTVTSLSQAHHFVIDDVTRLGPDIQIH 327


>gi|88608126|ref|YP_506383.1| riboflavin biosynthesis protein RibD [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600295|gb|ABD45763.1| riboflavin biosynthesis protein RibD [Neorickettsia sennetsu str.
           Miyayama]
          Length = 372

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 118/330 (35%), Positives = 175/330 (53%), Gaps = 11/330 (3%)

Query: 1   MPVSSFDAR---FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEV 57
           M  S    R   +M AA+  S +  G T+ NPSV C+IVKD  V+G+GVT   G PHAE 
Sbjct: 1   MSFSKMHGRIVYYMEAAVNASLFGQGFTADNPSVGCIIVKDDEVVGKGVTGINGSPHAEA 60

Query: 58  QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            AL+ AG +ARGA  Y TLEPC+H+GR+ PC   IIE GI+ V +   DPD RV+G+G+Q
Sbjct: 61  VALKVAGIKARGADLYTTLEPCAHHGRTAPCTDLIIESGIKNVFIGTRDPDTRVNGKGIQ 120

Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
            L + GI +   +++ E  +    Y  RQV  +  + LK A + D  I      S  IT 
Sbjct: 121 KLQESGIVVTTGILKRECCVSNIGYFYRQVLGKPFVILKTATTLDGKIACFNGKSAWITS 180

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL-SLDSK 235
              +   H+LR  S ++++   T+  DDP+L+CRL G+++ S ++++LD   ++ S + K
Sbjct: 181 PAMRRTAHMLRRMSSSVMISYSTLKHDDPQLSCRLPGVKKES-IKVVLDTRGEISSPNFK 239

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
           I         I+ +     +            +  +  DL+ +L  L   G+ S+LVE G
Sbjct: 240 IFNDG-----IVWSFGKRNIFKHKNFFNFEANLNGEMLDLEDVLQQLGTMGINSVLVECG 294

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             +  SFI   L D II +RS  V G   +
Sbjct: 295 GKLFSSFITGDLFDQIIWFRSNKVAGGDAL 324


>gi|188582604|ref|YP_001926049.1| riboflavin biosynthesis protein RibD [Methylobacterium populi
           BJ001]
 gi|179346102|gb|ACB81514.1| riboflavin biosynthesis protein RibD [Methylobacterium populi
           BJ001]
          Length = 359

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 138/358 (38%), Positives = 191/358 (53%), Gaps = 12/358 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  AL   R ++G T  NPSV  ++V  DG ++G+ VTA GG PHAE  AL  AGE ARG
Sbjct: 1   MRLALALGRRNLGRTWPNPSVGAVVVTPDGRIVGQAVTAPGGRPHAEPLALAMAGEAARG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           AT YVTLEPCSH+GR+PPC +  I  G+ RVV  ++DPD RV+GRG   L   GI +   
Sbjct: 61  ATLYVTLEPCSHHGRTPPCTEATIRSGVARVVTAIEDPDPRVAGRGHAGLRAAGIAVETG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++  E       + +R  + R  + LK+A ++D     +    + ITG I+   VHL RA
Sbjct: 121 LLREEAARDHRGHFSRVTKGRPSLHLKLARTRDGFAAPSTGERLKITGAIADGAVHLWRA 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
            +DAI+VGIGT  ADDP LT RL GL E SP+RI+LD   +L+  S +++ A   P +++
Sbjct: 181 HADAIMVGIGTARADDPSLTVRLPGLTERSPLRIVLDSTLRLNPASHLVRGARDLPTLVL 240

Query: 249 TENDDPVLALAFRKK-NINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           T    P  A        + I +         DL   L  L  RG+T +  EGG A+A + 
Sbjct: 241 TGRGAPAHARRMLASFGVEIAFVPTDAQGRIDLPAALAALAERGLTRICSEGGPALADAL 300

Query: 303 INSRLVDSIILYRSQIVIGE-GGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
               L+D+  L    + +GE GG+P+    L     + +F  V     G D    Y  
Sbjct: 301 AAHDLIDACTLITGAVALGEAGGLPALGPNLARRLADGSFATVETRDLGPDTATTYER 358


>gi|163788599|ref|ZP_02183044.1| riboflavin biosynthesis protein RibD [Flavobacteriales bacterium
           ALC-1]
 gi|159875836|gb|EDP69895.1| riboflavin biosynthesis protein RibD [Flavobacteriales bacterium
           ALC-1]
          Length = 323

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 99/348 (28%), Positives = 157/348 (45%), Gaps = 32/348 (9%)

Query: 16  RFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--ARGATAY 73
           + +   +G T  NP V  +IV D  +I  G T+  G  HAEV A+    ++     +T Y
Sbjct: 2   QIAENGLGFTRPNPMVGAVIVHDKKIISEGFTSTYGGNHAEVNAINSIKDKSLLEKSTLY 61

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMES 132
           VTLEPCSH+G++PPC+  I++  I  V++   D +  V+G+G+  L   G  +   ++E+
Sbjct: 62  VTLEPCSHHGKTPPCSDLILKHKIPEVIIGCVDDNPEVAGKGIAKLKASGCKVTVGVLEA 121

Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG---CGSVPITGFISKNQVHLLRAQ 189
           E K     + T   +KR +I LK A ++D  I          V IT   S+  VH  RA+
Sbjct: 122 ECKTHHKRFFTFHNKKRPYIILKWAETKDGFIAPETKNEKKPVWITNPYSRQLVHKWRAE 181

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
             AILVG  TVL D+P LT R       +P R+++D   KL+L+  +          +  
Sbjct: 182 EQAILVGTNTVLEDNPSLTVR--DWDGENPTRVVIDRTSKLNLNFNVFSDE-AKTTRLTE 238

Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
            N D    +A +  N                +L    + S+++EGGA    +FI+  L D
Sbjct: 239 LNIDFNKPIAVQVAN----------------MLYQSNINSIIIEGGAKTLQTFIDEGLWD 282

Query: 310 SIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
              ++   I   + G  +P   G        +      +D    Y+  
Sbjct: 283 EARVFIGDIDF-KNGTKAPTLNG------KQITESKIKNDTLRIYVKD 323


>gi|317154507|ref|YP_004122555.1| riboflavin biosynthesis protein RibD [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944758|gb|ADU63809.1| riboflavin biosynthesis protein RibD [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 377

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 104/365 (28%), Positives = 165/365 (45%), Gaps = 19/365 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
           M+ A+  +R   G  + NP V  ++V    ++  G     G  HAE + L +A   G   
Sbjct: 14  MARAIELARLGRGAVAPNPCVGAVLVDGDRIVAEGWHMRYGGLHAERECLVDARSKGVTP 73

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           RG T +VTLEPC+H+G++PPC Q +IE G+ RVVV   DP+  V+  G++ L+  GI V+
Sbjct: 74  RGLTMFVTLEPCNHHGKTPPCTQALIEEGVARVVVGTRDPNP-VAAGGIERLTAAGIEVE 132

Query: 128 RMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
               ESE +  +  +L  Q    +   +K+A + D  I        P++   S  +VH L
Sbjct: 133 VGALESECRDLIADFLVWQNSHSTFNIIKMAATLDGKIASRLRRPEPVSCAESFARVHAL 192

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSKIIKTALLAP 244
           R++ DAI+VG  T  ADDP LTCRL  L +    P  +++           ++       
Sbjct: 193 RSRVDAIIVGGSTFRADDPSLTCRLTTLPDGFVQPYGVVITSRLPDDPARHVLTRTRPER 252

Query: 245 VIIVTENDDP--VLALAFRKKNINIIYCD----CRDLKKLLTIL-VGRGVTSLLVEGGAA 297
            I +T +       A   R+   ++          +L   L  L    G  + L EGG  
Sbjct: 253 TIFMTTDTSARSQEADRLREGGTSVWPLPGPPGGLNLSLGLERLRYDLGCHTTLCEGGGQ 312

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYFGSDVCL 352
           +A  F+   L D I+ + +  ++G+ G PS              N+  +     GSD+ L
Sbjct: 313 LAMQFVGQGLGDEIVHFVAPRILGDEGAPSAYSGRQGVTMAQTLNYRIIDMHPSGSDIML 372

Query: 353 EYIGK 357
               +
Sbjct: 373 TLRPR 377


>gi|88803651|ref|ZP_01119175.1| riboflavin biosynthesis protein ribD [Polaribacter irgensii 23-P]
 gi|88780384|gb|EAR11565.1| riboflavin biosynthesis protein ribD [Polaribacter irgensii 23-P]
          Length = 354

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 101/358 (28%), Positives = 181/358 (50%), Gaps = 22/358 (6%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--GE 65
            +++   L+ ++  +G T  NPSV  +IV  G+++G G TA  G  HAEV A+      +
Sbjct: 5   EQYIQRCLQIAKNGIGTTRPNPSVGAVIVCKGVIVGEGFTAAYGGNHAEVNAVNSVEHKK 64

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
               +T YVTLEPCSH+G++PPCA  II+  I+RVV+   D +  V+G+G++ L   G++
Sbjct: 65  LLVESTLYVTLEPCSHFGKTPPCADLIIKYNIKRVVIGCVDTNSLVAGQGIERLKSAGVV 124

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG---SVPITGFISKN 181
           V   ++E+E +     +   Q +KR +I LK A ++D  +            I+   S+ 
Sbjct: 125 VTVGVLEAECRKHHKRFFVVQEKKRPYIILKWAETKDGFVAPLSKDAVAPKFISNRYSQQ 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH LR+Q  AILVG  TVL D+P+L  R      ++P+R++LD    +   + +     
Sbjct: 185 LVHKLRSQEHAILVGKNTVLEDNPKLNVR--SWSGNNPIRVVLDSALGIPESAHVFD-GS 241

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL-----KKLLTILVGRGVTSLLVEGGA 296
           +  ++I  +          +      +  +  D      +++  +L+   V SL+VEGG 
Sbjct: 242 ITTIVITGKIHGHEEVKTKKYAFNKNLIFEPIDFSKNVAEQICVVLLKHQVQSLIVEGGT 301

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
               +FI+  L D  +++      G+    + ++   L+KN+   ++++   D+  +Y
Sbjct: 302 QTLATFISENLWDEALVFV-----GDHSFDAGVKAPRLDKNY---KKEHVLEDLIKKY 351


>gi|300775167|ref|ZP_07085029.1| riboflavin biosynthesis protein RibD [Chryseobacterium gleum ATCC
           35910]
 gi|300505907|gb|EFK37043.1| riboflavin biosynthesis protein RibD [Chryseobacterium gleum ATCC
           35910]
          Length = 341

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 102/357 (28%), Positives = 168/357 (47%), Gaps = 21/357 (5%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D  ++   +  ++  +G T  NP V  +IV +G +IG G     G  HAE+ A+    
Sbjct: 2   NNDELYIKRCIELAQKALGKTYPNPLVGSVIVHNGEIIGEGYHHKAGENHAEINAINSVK 61

Query: 65  EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
            +     +T YV+LEPC+HYG++PPCA  I E G ++VV+   D   +V+G+G + + + 
Sbjct: 62  NKDLIPESTIYVSLEPCAHYGKTPPCALKIRELGFKKVVIGAMDSHDKVNGKGKKIIQEA 121

Query: 123 GII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI  V  ++E E       + T   +KR +I LK A S D  +         ++  +   
Sbjct: 122 GIEAVSGILEKECIELNKRFFTYHEKKRPYIILKWAESGDGFLD-KDFKPTAVSNTLVNQ 180

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH LRA   AILVG  T L D+P LT R    +  +P+RI++D   K+     I     
Sbjct: 181 FVHQLRADEHAILVGTQTALNDNPSLTVR--NAEGVNPVRILIDFDLKVPAHFNIYNND- 237

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTSLLVEGGAAVAH 300
            A  +++             + +I  I  +  D L +L+  L    + S+++EGG     
Sbjct: 238 -AKTLVLNS------VKEGIENHIQFIKINKDDFLPELMKALYKEQIQSIIIEGGRFTLQ 290

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
            FI++ L D  I+ +++ +  E G  +P      E N+   R + F  +    Y  K
Sbjct: 291 QFIDANLWDEAIVIKNENLKLENGTKAP------EFNYTADRLENFRDNTVSFYRQK 341


>gi|154250091|ref|YP_001410916.1| riboflavin biosynthesis protein RibD [Fervidobacterium nodosum
           Rt17-B1]
 gi|154154027|gb|ABS61259.1| riboflavin biosynthesis protein RibD [Fervidobacterium nodosum
           Rt17-B1]
          Length = 365

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 101/321 (31%), Positives = 158/321 (49%), Gaps = 12/321 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL---EEAG 64
            RFM  A+  ++  +G  + NP V  +IVKDG ++  G   Y G  HAE  A+     AG
Sbjct: 11  ERFMKLAIVIAKKGIGFVNPNPPVGAVIVKDGKILSMGYHKYYGGYHAERDAILSALNAG 70

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            +  G+T YVTLEPC HYG++PPC   II+ GI+ V +   DP+  +SG G + L + G+
Sbjct: 71  IDISGSTMYVTLEPCDHYGKTPPCTDLIIQSGIKEVYIACTDPNP-ISGNGAEKLRKNGV 129

Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V   ++E E +     +         ++TLK A + D  I      S  IT  + +  V
Sbjct: 130 DVHIGLLEEEARELAKFFFKSVETGIPYVTLKYAATLDGKIADVNGNSKWITDEL-RKVV 188

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H LR++  A+LVG GTV+ D+P L  R    ++ +P++++LD    +    K +      
Sbjct: 189 HKLRSEHMAVLVGAGTVIKDNPTLNVRFLKSKKRNPIKVVLDKRGVIFEKIKDLNVFQGE 248

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG-VTSLLVEGGAAVAHSF 302
            VI+ TE    V A      N  +   +  +  ++L  L     V S+LVEGG+ +   F
Sbjct: 249 KVIVFTEKQ--VSAPELNGVN-GVKIFNVLEPIEILKTLYKEERVDSVLVEGGSEIFSQF 305

Query: 303 INSRLVDSIILYRSQIVIGEG 323
           +     D I  +     +G+G
Sbjct: 306 L--PFADEIYGFYGLKALGKG 324


>gi|171059615|ref|YP_001791964.1| riboflavin biosynthesis protein RibD [Leptothrix cholodnii SP-6]
 gi|170777060|gb|ACB35199.1| riboflavin biosynthesis protein RibD [Leptothrix cholodnii SP-6]
          Length = 416

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 114/367 (31%), Positives = 167/367 (45%), Gaps = 36/367 (9%)

Query: 19  RWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQA---LEEAGEEARGATAYV 74
               GLT  NP V C+IV   G ++G G T   G PHAEV A      AG    GATAYV
Sbjct: 37  EQGFGLTEPNPRVGCVIVDAQGRLLGSGHTQQAGGPHAEVMAMRTARAAGHSLIGATAYV 96

Query: 75  TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESE 133
           TLEPC+H+GR+PPCA  +IE G++RVV  + DP   V+G+GL  L+  GI +   +M   
Sbjct: 97  TLEPCAHHGRTPPCADALIEAGLKRVVAAITDPFPLVAGQGLARLAAAGIQVEQGLMAEA 156

Query: 134 GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAI 193
                  + +R + +R  + +K+A S D    +    S  ITG  ++   H  R ++ A+
Sbjct: 157 ATAINIGFFSRVLRQRPWVRMKVAASLDGRTALMNGQSQWITGAAARADGHAWRRRASAV 216

Query: 194 LVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD 253
           L GIGTVL DDP L  R +      PMR+++D   +  + ++++  A    V++ T  D+
Sbjct: 217 LTGIGTVLDDDPRLDVR-HVPTPRQPMRVVVDAPLRTPVTARLL--APPGEVLVYTSADE 273

Query: 254 PVLALAFRKKN--------------------INIIYCDC-----RDLKKLLTILVGRGVT 288
              A    +                      +  +          DL  +L  L  RGV 
Sbjct: 274 TAQAAWLAEVQAAHGARAALGPDGTDVAPPLVQCVSMPGGPAGKVDLAAMLADLARRGVN 333

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345
            L VE G  +  S +   LVD  ++Y +  ++G G       PLE               
Sbjct: 334 ELHVEAGHRLNGSLLREGLVDEFLVYLAPKLLGLGREMWSWGPLESLDQAIELEWGDVQS 393

Query: 346 FGSDVCL 352
            G D+ L
Sbjct: 394 VGGDLRL 400


>gi|294635299|ref|ZP_06713797.1| riboflavin biosynthesis protein RibD [Edwardsiella tarda ATCC
           23685]
 gi|291091308|gb|EFE23869.1| riboflavin biosynthesis protein RibD [Edwardsiella tarda ATCC
           23685]
          Length = 319

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 106/319 (33%), Positives = 154/319 (48%), Gaps = 18/319 (5%)

Query: 53  PHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           PHAEV AL  AGE ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVV  + DP+  V+
Sbjct: 1   PHAEVHALRMAGERARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPHVA 60

Query: 113 GRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS 171
           GRGL  L Q GI +   +M +E +     +L R      ++ LK+  S D    MA   S
Sbjct: 61  GRGLYRLQQAGIEVRHGLMLAEAEAVNKGFLKRMRTGFPYVQLKLGASLDGRTAMASGES 120

Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPM 220
             IT   ++  V   RAQS AIL    TVLADDP LT R + L +             P+
Sbjct: 121 QWITSAAARADVQRYRAQSSAILSSSATVLADDPSLTVRWDELDDETQRHYPREWLRQPL 180

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
           R+I+D H +++   ++I        ++  E  D     +   +          DL  L+ 
Sbjct: 181 RVIVDSHNRVTPQHRLISQPGE--TLLARETPDTQAWPSAVSQLSLPRNGAGLDLVLLMM 238

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEK 336
            L  R + S+ VE G  +A + + + +VD +I+Y +  ++G+          LE      
Sbjct: 239 QLGKRQINSVWVEAGPRLAGALLQAGVVDELIVYLAPKLLGDAARGLCHLPGLERLGDAP 298

Query: 337 NFMCVRRDYFGSDVCLEYI 355
           +         G D+ L   
Sbjct: 299 SLAFSEVTRVGDDLRLTLR 317


>gi|297195567|ref|ZP_06912965.1| riboflavin biosynthesis protein RibD [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197721390|gb|EDY65298.1| riboflavin biosynthesis protein RibD [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 363

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 115/357 (32%), Positives = 174/357 (48%), Gaps = 12/357 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE 62
           ++ +A  M  A+  +   +G TS NP V C+I    G V+G G     G PHAE+ AL  
Sbjct: 3   TAAEADAMRRAITLAARGLGSTSPNPVVGCVITDASGHVVGEGFHQRAGGPHAEIHALRA 62

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  ARG TAYVTLEPC+H GR+ PCAQ ++E G+ RVV  V DP+   +  G   L   
Sbjct: 63  AGVLARGGTAYVTLEPCNHTGRTGPCAQALVEAGVARVVYAVADPN-GEAAGGADTLRAA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++  E       +LT     R H+T K A + D  +  A   S  I+   S+ 
Sbjct: 122 GIEVEQGLLAEEAAAGNAGWLTSVRLGRPHVTWKYAATLDGRVAAADGTSRWISSPESRA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF-KLSLDSKIIKTA 240
            VH LRA++DA++VG GT  ADDP L  R        P+R+++D     +   ++++  A
Sbjct: 182 DVHRLRAEADAVVVGSGTARADDPHLAVR-GVAGATQPLRVVIDTEAVAVKPGARVLDDA 240

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
               V +  +      A       +        D+  LL  L  RGV S+L+EGG  +A 
Sbjct: 241 APTAVAVAEDVLPDATAHIADVWRLPRASGGGLDVAALLATLHTRGVRSVLLEGGPTLAG 300

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352
           +F+ +  VD +I Y + +++G G  P+ L +  +                 G+D+ +
Sbjct: 301 AFVAAGAVDRVIGYLAPVLLGAG--PAALADAGITTITDALRLDVTETVRIGTDLRV 355


>gi|300812786|ref|ZP_07093184.1| riboflavin biosynthesis protein RibD [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300496238|gb|EFK31362.1| riboflavin biosynthesis protein RibD [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 351

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 111/359 (30%), Positives = 171/359 (47%), Gaps = 13/359 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D  +M  A+  +R     T  NP V   +VKDG V+  G   + G  HAE   + +  
Sbjct: 2   ASDEEYMRLAIAAARKAGNATWRNPRVGSCLVKDGKVLATGFHQHYGGFHAERDTISKLT 61

Query: 65  -EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            E+   +T YVTLEPC HYG+ PPC Q II+ GI+RVVV   DP   V+G+G+  L Q G
Sbjct: 62  PEQLSNSTIYVTLEPCCHYGKQPPCTQLIIDSGIKRVVVGATDPHSLVTGKGIAALRQAG 121

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           + +   ++  E       Y         ++TLK A++ D+M+         ITG  +  +
Sbjct: 122 LEVSTGLLAKEASQLNDHYNYFYQTGLPYVTLKQAMTLDHMLAKK-GERTAITGAEAWTR 180

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTA 240
           VH  RA   A+L+G  T + DDP L    + +  H P+R++LD   +L   LD ++    
Sbjct: 181 VHQERAGYQAVLIGSETAIIDDPLLLTSEDLV--HPPVRVVLDRRGRLLEHLDLRLFSD- 237

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
             A   I+TEN  P        K + I       +   + IL  +GV S+  EGGA +  
Sbjct: 238 KRAETWILTEN--PDFLEQDMPKQVKIFALPDGKISTSIKILADQGVQSVYAEGGAHLQE 295

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
           S + + LV+ +I Y +   +G G   +   E     +   V+ +  G DV +    K++
Sbjct: 296 SLLAAGLVNDVISYVAPRFLGRGTEAAVAAEAL---DLKDVQTEQVGDDVRIYGRIKDV 351


>gi|326780548|ref|ZP_08239813.1| riboflavin biosynthesis protein RibD [Streptomyces cf. griseus
           XylebKG-1]
 gi|326660881|gb|EGE45727.1| riboflavin biosynthesis protein RibD [Streptomyces cf. griseus
           XylebKG-1]
          Length = 366

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 117/363 (32%), Positives = 176/363 (48%), Gaps = 16/363 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE 62
           ++ D   M  A+  +   +G TS NP V C+I    G V G G     G PHAEV AL  
Sbjct: 3   TAADITAMRRAITLAARGLGSTSPNPVVGCVITDAAGAVAGEGFHQRAGGPHAEVHALRA 62

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  ARG TAYVTLEPC H GR+ PC+Q ++  GI RVV  V DP+   +G G   L   
Sbjct: 63  AGGRARGGTAYVTLEPCDHTGRTGPCSQALLAAGISRVVYAVADPNPGAAGGG-DTLRHA 121

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+  +  ++  E +    A+LT     R ++  K A + D  I  A   S  IT   ++ 
Sbjct: 122 GVRAEGGLLADEAEAGNAAWLTSVRRGRPYVMWKYAATLDGRIAAADATSRWITSPEARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTA 240
            VH LRA++DA+LVG GT   DDP+L  R        P+R+++D +   +   ++++   
Sbjct: 182 DVHRLRAEADAVLVGSGTARTDDPQLAVR-GIDGATQPLRVVVDTNATAVKPGARVLD-- 238

Query: 241 LLAPVIIVTENDDPVLALAFRK--KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
             AP ++   +D P   L      +          DL  LL  L  RGV S+L+EGG  +
Sbjct: 239 ATAPTLVAVADDAPAGHLPEPAVLRLPRAATGPGLDLDALLGALHERGVRSVLLEGGPTL 298

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
           A +F+ +  VD ++ Y + +++G G  P+ L +  +                 G D+ + 
Sbjct: 299 AGAFVAAGKVDKVVGYLAPVLLGAG--PAALADAGISTIAGALRLDVTETVPIGPDLRIT 356

Query: 354 YIG 356
            + 
Sbjct: 357 AVP 359


>gi|89901442|ref|YP_523913.1| riboflavin biosynthesis protein RibD [Rhodoferax ferrireducens
           T118]
 gi|89346179|gb|ABD70382.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Rhodoferax ferrireducens T118]
          Length = 377

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 105/344 (30%), Positives = 161/344 (46%), Gaps = 19/344 (5%)

Query: 27  TNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
            NP V C++       +G+G T   G  HAE+ AL +A   G    GATAYVTLEPCSH+
Sbjct: 25  PNPRVGCVMTDCRENTLGQGHTQRTGGAHAEIVALRDAKARGNSVVGATAYVTLEPCSHH 84

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG-----KIF 137
           GR+ PC   +I  GI++VV  + DP+  VSG+G + L   G+ V+ M   +      +  
Sbjct: 85  GRTGPCCDALIAAGIKKVVASIADPNPLVSGQGFERLRAAGVEVEVMPADDPLAIASREL 144

Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
              + +R + K   + LK+A S D    +    S  IT   ++   H  RA++ A+L GI
Sbjct: 145 NIGFFSRMIRKTPWVRLKMAASLDGKSALENGVSQWITSEAARTDGHAWRARACAVLTGI 204

Query: 198 GTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
           GTVL D+P L  RL       P  +I+D   +  LD+ +     +  +    +N+    A
Sbjct: 205 GTVLTDNPRLDVRLVD-TPRQPHLVIVDSRLETPLDAALFTPGRVIYLYAAVQNEAKKAA 263

Query: 258 LAFRKK------NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311
           L  R         +     +  DL  +L  L  R +  L VE G  +  SFI   LVD  
Sbjct: 264 LETRGATVIYAPGLEPATRNKVDLAAMLRDLAAREINELHVEAGHKLNGSFIREGLVDEY 323

Query: 312 ILYRSQIVIG-EGGIP--SPLEEGYLEKNFMCVRRDYFGSDVCL 352
           ++Y + ++IG   G+    P+ +     N      +  G D+ +
Sbjct: 324 LVYLAPMLIGLGSGMANFGPITQLEDAVNLRFHSIEPVGDDLRI 367


>gi|220925141|ref|YP_002500443.1| riboflavin biosynthesis protein RibD [Methylobacterium nodulans ORS
           2060]
 gi|219949748|gb|ACL60140.1| riboflavin biosynthesis protein RibD [Methylobacterium nodulans ORS
           2060]
          Length = 388

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 131/365 (35%), Positives = 184/365 (50%), Gaps = 13/365 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPHAEVQ 58
            S+ D R+M  AL   R H+G T  NPSV  ++V        ++ +GVT  GG PHAE  
Sbjct: 8   QSALDRRYMRLALALGRRHLGETWPNPSVGAVLVAGPPGAERILAQGVTQPGGRPHAERI 67

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           AL  AGE ARGAT YVTLEPCSH+GR+ PCA  ++E GI RVV  + DPD RV+GRG   
Sbjct: 68  ALAAAGEAARGATLYVTLEPCSHHGRTSPCADAVVEAGIARVVSAMADPDPRVAGRGHGR 127

Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
           LS  GI V      +     H     +V               +     G G + ITG +
Sbjct: 128 LSAAGIAVTVGTLGQEAARDHLGHVTRVTAGRPAIDLKLARTPDGFAAGGTGRLIITGPL 187

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           +  ++HL+RA SDAI+VG+ TVLADDPELT RL GL + SP+R++LDP  +    S++++
Sbjct: 188 ANARIHLMRAHSDAIMVGVETVLADDPELTVRLPGLGDRSPVRVVLDPALRTPPQSRLLR 247

Query: 239 TALLAPVIIVTENDDPVLA-LAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLV 292
           T+   P +I+     P  A  A R    ++            L+  L  L  RG T +  
Sbjct: 248 TSDRVPTLILCGPAAPPEAERAIRAAGADVARMPVDPDGRLQLRAALHGLGERGFTRVFC 307

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSD 349
           EGG  +A++     L+D+ ++      +   G+P+    L +      F        G D
Sbjct: 308 EGGPTLANALARHGLIDTCLIVTGARPLDRAGLPAIGPDLADLLASGAFGLAEETRAGPD 367

Query: 350 VCLEY 354
           +   Y
Sbjct: 368 LFTSY 372


>gi|224025262|ref|ZP_03643628.1| hypothetical protein BACCOPRO_01999 [Bacteroides coprophilus DSM
           18228]
 gi|224018498|gb|EEF76496.1| hypothetical protein BACCOPRO_01999 [Bacteroides coprophilus DSM
           18228]
          Length = 306

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 105/302 (34%), Positives = 161/302 (53%), Gaps = 15/302 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D +++   ++ +R  +   + NP V  ++V    +IG G  A  G  HAEV AL    +E
Sbjct: 4   DEKYIRRCIQLARNGLCNAAPNPMVGAVVVYRDRIIGEGYHARCGEGHAEVNALRSVRDE 63

Query: 67  --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
              + AT YV+LEPCSHYG++PPCA  I+  GI RVVV   DP   V+GRG++ L + GI
Sbjct: 64  SLLKEATLYVSLEPCSHYGKTPPCADLIVSKGIPRVVVGCMDPFPLVAGRGIRKLEEAGI 123

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP--ITGFISKN 181
            +   ++E E +  +  ++T  + KR +ITLK A S D  I        P  ++  ++  
Sbjct: 124 DVTVGVLEEECRELIRRFVTLNIRKRPYITLKWAQSADGFIDRLRQEGSPAVLSTPLTSM 183

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH +RA+  AILVG  T L D+P LT R       +P+R+++D    L  + K+     
Sbjct: 184 YVHKMRAEYKAILVGRRTALLDNPSLTTR--NWYGPNPLRLVIDRKLTLPRELKLFD--G 239

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVA 299
            AP ++ TE    V A   R+ N++    D     L +++ +L  R + SLLVEGG  ++
Sbjct: 240 TAPTLVFTEE---VPAECLRQTNVDYQVLDFSQDILPQIMQVLYERKIQSLLVEGG-RLS 295

Query: 300 HS 301
            S
Sbjct: 296 AS 297


>gi|257055601|ref|YP_003133433.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Saccharomonospora viridis DSM 43017]
 gi|256585473|gb|ACU96606.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Saccharomonospora viridis DSM 43017]
          Length = 349

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 120/368 (32%), Positives = 173/368 (47%), Gaps = 38/368 (10%)

Query: 1   MPVSSFDAR----FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHA 55
           M  S+   R     M  AL  S    G TS NP V  +I+  +G  +G G T     PHA
Sbjct: 1   MSASAVTERVVREAMEVALALSAGVRGNTSPNPPVGAVILDAEGRRVGTGATQPPPGPHA 60

Query: 56  EVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           EV AL EAGE ARG TA VTLEPCSH+GR+PPC Q +++ G+  V   V DP    +  G
Sbjct: 61  EVVALREAGERARGGTAVVTLEPCSHHGRTPPCTQALLDAGVAAVRYAVADPHP-AASGG 119

Query: 116 LQWLSQKGIIVDRMMESEGKI--FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP 173
            + L   G+ V   + +E      L A+L R+   R H+T K A S D  +  A   S  
Sbjct: 120 AERLRAAGVDVAGGVLAEEVASGPLRAWLHRERTGRPHVTWKYAASLDGRVAAADGTSRW 179

Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLS 231
           I+G  S+ +VH LRA  DAI+VG GTVL DDP LT R     L    P+R+++     + 
Sbjct: 180 ISGPTSRAEVHALRAAVDAIVVGTGTVLTDDPWLTVRTPDGELAPRQPLRVVVGTRG-IP 238

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
             ++++ +                            +     D  ++L +L  RGV  +L
Sbjct: 239 EGARVLDSTAET------------------------VRIASHDPDEVLALLSERGVVDVL 274

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI---PSPLEEGYLEKNFMCVRRDYFGS 348
           +EGG  +A +F+ +  VD II Y +  ++G G     P+ +       ++        G 
Sbjct: 275 LEGGPTLAGAFVAAGRVDRIIAYVAPTLLGAGPAALGPAGVSTITQAHHWRVEGATMCGE 334

Query: 349 DVCLEYIG 356
           DV +  + 
Sbjct: 335 DVRISAVP 342


>gi|323436092|ref|ZP_08088234.1| riboflavin biosynthesis protein RibD [Dokdonia donghaensis MED134]
 gi|321496407|gb|EAQ38739.2| riboflavin biosynthesis protein RibD [Dokdonia donghaensis MED134]
          Length = 346

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 159/357 (44%), Gaps = 39/357 (10%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG----E 65
           ++   +  ++  +     NPSV  ++V +  +I  G T+  G PHAEV  +  A     E
Sbjct: 20  YIKRCIALAKNGLPAAMPNPSVGAVLVHNNTIIAEGYTSAYGGPHAEVNCIAFAKANTPE 79

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
               +T YV+LEPCSH+G++PPCA  +I+ GI+RVV+   DP  +V+G G++ L Q G+ 
Sbjct: 80  LIAKSTLYVSLEPCSHWGKTPPCADLVIDSGIKRVVIGTIDPFAKVAGAGIKKLMQAGVD 139

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV---PITGFISKN 181
           +   ++E E +     + T   EKR  I LK A + +  I  A         IT   S+ 
Sbjct: 140 VTVGVLEKECQEVNKRFFTYHNEKRPFIILKWAETANGFIAPASRDKQEPVWITNSHSRQ 199

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            VH LR++   ILVG  TV+ D+P LT R       +P RI++D    L     I     
Sbjct: 200 LVHKLRSKEMGILVGGKTVIEDNPTLTTR--DWHGSNPTRIVIDTQGNLPKKLHIFNNE- 256

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            AP I++ ++                      D K +   L    + S++VEGGAA    
Sbjct: 257 -APTIVLKDS----------------------DPKSICKELFEHNIQSVIVEGGAATLQR 293

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           FI++ L D      + +  G     + ++       F      +   D    Y   +
Sbjct: 294 FIDAALWDE-----ASVFTGLTNFNAGIKAPKKTSQFTLQSSQHVQGDRLDIYTRSD 345


>gi|78219882|gb|ABB39231.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 363

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 99/368 (26%), Positives = 165/368 (44%), Gaps = 27/368 (7%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
           M  A+  +      TS NP V  ++VKDG  + RG     G PHAE++ L +A   G   
Sbjct: 1   MLEAVALAEKGRWATSPNPCVGAVLVKDGQTVARGWHTAYGKPHAEIECLRDAARRGVNP 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
              T  VTLEPC+H G++PPC+  +++ GIR VVV + DP+  V+  G  +L + G+ + 
Sbjct: 61  AECTLVVTLEPCNHTGKTPPCSIAVLQAGIRHVVVGMMDPNP-VAQGGANFLRENGVTVE 119

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +   E +  +  ++T +     +  +K+A + D  I      S  I+G  S+ +VH L
Sbjct: 120 TGVCRQECEDVVDDFITWKKTPLPYTIIKLASTLDGRIATRTGHSRWISGEESRRRVHEL 179

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS----KIIKTALL 242
           R  +DA++VG GT  AD+P+LTCRL G++   P+ +++        D+     +++    
Sbjct: 180 RRHADAVIVGGGTFRADNPQLTCRLEGIR-RQPLAVVVTSQL---PDAGAPMHLLQQRPH 235

Query: 243 APV------IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVEGG 295
             +      +  +E  D + AL  R   ++       DL   L  L         L EGG
Sbjct: 236 ETIFWTPRAVAASEKADALRALGVRVTGLDRNCKGRLDLHTALAGLRSEYDCYHTLCEGG 295

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK------NFMCVRRDYFGSD 349
             +A S +   +   + L+ +  ++       PL +G                    G D
Sbjct: 296 GMLALSMLEMNVAQELELHMAPKLL-ADAQARPLFDGRTPSTMEQALGLRICNVARSGED 354

Query: 350 VCLEYIGK 357
           V L    +
Sbjct: 355 VILTLRPR 362


>gi|294054578|ref|YP_003548236.1| riboflavin biosynthesis protein RibD [Coraliomargarita akajimensis
           DSM 45221]
 gi|293613911|gb|ADE54066.1| riboflavin biosynthesis protein RibD [Coraliomargarita akajimensis
           DSM 45221]
          Length = 369

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 101/366 (27%), Positives = 153/366 (41%), Gaps = 14/366 (3%)

Query: 1   MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           M  S S    +M+ AL+ +    G T  NP V  +IV+DG ++  G     G PHAE++A
Sbjct: 1   MSASHSEHEFYMARALKLAAQGWGTTHPNPMVGAVIVEDGAIVAEGWHTAAGQPHAEIEA 60

Query: 60  LEEAGEE-ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           L   G   A  A  YVTLEPCS  GR+  C   I+  GI+ VV+   DP+   +G GL  
Sbjct: 61  LAALGRAPASDAVLYVTLEPCSTSGRTGACTDAILRAGIQNVVIGATDPNPDHAGNGLDL 120

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L + G+ +   ++E E       +    V +   I  KIA + D     +   S  +TG 
Sbjct: 121 LREAGVHVQAGILEQECDDLNLIFNHWIVRQSPLIAAKIATTLDGKFAASNGQSKWVTGP 180

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL---DS 234
           +++  V   R    AI V   T +AD+P LT RL       P+R + D +        D 
Sbjct: 181 LARADVMHWRRYFPAIAVTAQTAVADNPSLTSRLEDGT-WCPLRFVFDRNLATLERLGDL 239

Query: 235 KIIKTALLAPVII-VTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292
           ++   +     I+  +E  DP   L    +       D   D+           +  + +
Sbjct: 240 QLYNDSFAENTIVCCSEASDPKPLLDVGIRCWQFPVVDDHLDIDAFRRRCFEESIAGVYI 299

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVI---GEGGIPSP--LEEGYLEKNFMCVRRDYFG 347
           E G  +  + I +R VD +  Y S   +   G  GI S    E      N   +R   F 
Sbjct: 300 EAGPGLMTAMIEARFVDYVFHYLSPRYMSDSGSTGIGSARETESMGETLNLEQIRYANFE 359

Query: 348 SDVCLE 353
            D+ + 
Sbjct: 360 PDLLIR 365


>gi|298529749|ref|ZP_07017152.1| riboflavin biosynthesis protein RibD [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511185|gb|EFI35088.1| riboflavin biosynthesis protein RibD [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 371

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 101/372 (27%), Positives = 164/372 (44%), Gaps = 21/372 (5%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  S     FM  AL  +R   G T+ NP V  L+     ++G+G     G  HAEV+A+
Sbjct: 1   MNQSE----FMLKALGLARQAKGFTAPNPCVGALVTCGDRIMGKGWHRAPGENHAEVEAI 56

Query: 61  EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           E A   G +      YVTLEPC+H+GR+PPC   +I+ GI  +++   DP+ +V G G +
Sbjct: 57  ENARENGADLSSCRMYVTLEPCNHHGRTPPCTAAVIQAGIPEIIIGARDPNSQVQGGGAE 116

Query: 118 WLSQKGIIVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
           +L   G+ V   +E +  + L   +   Q   R ++ LK A + D  I      S  +T 
Sbjct: 117 FLRNHGLRVTVGVEEQKCLDLIADFSLWQNSGRPYVYLKTASTLDGRIATRTGHSRWVTS 176

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
             ++  VH LR+   A+LVG  T   D+P LTCR+  ++ + P  ++L            
Sbjct: 177 ANARQMVHQLRSIVGAVLVGGNTFYQDNPALTCRIQEVK-NQPWAVVLTSRLPDPDQDFY 235

Query: 237 IKTALLAPVIIVTENDDPV--LALAFRKKNINIIYCD----CRDLKKLLTILVGR-GVTS 289
           +     +  I  T+ +      A     +   ++  D      DLK  L +L    G+  
Sbjct: 236 LLQKRASRTIFWTDKNSAASPRAAGLEARGCRVMGLDAEGPGLDLKLGLEMLRRETGIYY 295

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-GIPSP----LEEGYLEKNFMCVRRD 344
           LL EGG  +A S +   L D +  + +  ++G+   +P      +E      +F      
Sbjct: 296 LLCEGGGQLASSLLQQGLADEVWAFVALKILGDSLAVPVTSGREVELMDQTLDFRPGEIL 355

Query: 345 YFGSDVCLEYIG 356
             G ++ L    
Sbjct: 356 NLGPEILLRLFP 367


>gi|254796854|ref|YP_003081691.1| riboflavin biosynthesis protein RibD [Neorickettsia risticii str.
           Illinois]
 gi|254590091|gb|ACT69453.1| riboflavin biosynthesis protein RibD [Neorickettsia risticii str.
           Illinois]
          Length = 359

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 117/317 (36%), Positives = 171/317 (53%), Gaps = 8/317 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M AA+  S +  G T+ NPSV C+IVKD  V+G+GVT   G PHAE  AL+ AG +ARGA
Sbjct: 1   MEAAVNASLFGQGFTADNPSVGCIIVKDDEVVGKGVTGINGSPHAEAVALKVAGIKARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
             Y TLEPC+H+GR+ PC   II  GI+ V +   DPD RV+G+G+Q L + GI +   +
Sbjct: 61  DLYTTLEPCAHHGRTAPCTDLIIGSGIKNVFIGTRDPDTRVNGKGIQKLRESGIVVTTGI 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           ++ E  I    Y  RQV  +  +TLK A + D  I      S  IT    +  VH+LR  
Sbjct: 121 LKRECCISNIGYFYRQVFGKPFVTLKTATTLDGKIACFNGKSTWITSPALRRTVHMLRRI 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL-SLDSKIIKTALLAPVIIV 248
           S ++++   T+  DDP+L+CRL G+++ S ++++LD   ++ S + KI         I+ 
Sbjct: 181 SSSVMISYSTLKHDDPQLSCRLPGVKKES-IKVVLDTRGEISSPNFKIFNDG-----IVW 234

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           +                  +  +  DL  +L  L   G+ S+LVE G  +  SF+N  L 
Sbjct: 235 SFGKKNTFKHKNFFNFEANLNGEKLDLGDILQQLGTMGINSVLVECGGKLFSSFVNGNLF 294

Query: 309 DSIILYRSQIVIGEGGI 325
           D II +RS  V G   +
Sbjct: 295 DQIIWFRSNKVAGGDAL 311


>gi|225159038|ref|ZP_03725347.1| riboflavin biosynthesis protein RibD [Opitutaceae bacterium TAV2]
 gi|224802351|gb|EEG20614.1| riboflavin biosynthesis protein RibD [Opitutaceae bacterium TAV2]
          Length = 388

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 108/359 (30%), Positives = 147/359 (40%), Gaps = 15/359 (4%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR- 68
           FM  AL  +R   G T  NP V  +IV+DG V+  G  A  G PHAE  AL   G   + 
Sbjct: 11  FMWQALALARRAWGNTHPNPMVGAIIVEDGAVVAEGWHARDGGPHAERVALTALGRAPKP 70

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GAT YVTLEPCS +GR+  C   IIE GIRRVVV   DP+   +G G   L   G+ ++ 
Sbjct: 71  GATLYVTLEPCSTHGRTGACCDAIIEAGIRRVVVGATDPNPDHAGAGYARLRAAGVEVIT 130

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + E E       +          +  KIA + D  I      S  ITG  ++  VH  R
Sbjct: 131 GVRERECADLNLIFNQWITTGLPLLAGKIATTLDGKIACRTGHSKWITGEAARADVHRWR 190

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL---SLDSKIIKTALLAP 244
               AI VG  TVLADDP LT R     E  P R + D   +        ++        
Sbjct: 191 RLFPAIAVGAMTVLADDPRLTARPADGGEWCPWRFVFDGLLRTLGGPRLPQVYTDGHRER 250

Query: 245 VIIVTENDDP-VLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVA 299
            I+VT            R+  + +   D      +            +T +  EGGA + 
Sbjct: 251 TIVVTTPHGGMGYVRKLREMGVAVWVLDAPTQRVNFADFRRRCAEEKITGVYFEGGAQLL 310

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLE 353
              + SR +D +  YR+ ++  +    S       E     VR      +  G D  + 
Sbjct: 311 SELLRSRELDYLFNYRAPLLFADDKARSVFTGLRTESVQQAVRIQGATTEVHGEDSLVR 369


>gi|260063122|ref|YP_003196202.1| riboflavin biosynthesis protein RibD [Robiginitalea biformata
           HTCC2501]
 gi|88784691|gb|EAR15861.1| riboflavin biosynthesis protein RibD [Robiginitalea biformata
           HTCC2501]
          Length = 350

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 113/357 (31%), Positives = 171/357 (47%), Gaps = 22/357 (6%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65
            ++M   ++  R  +G ++ NP V  L+     +IG G T+  G PHAEV A+    +  
Sbjct: 5   EKYMLRCIQIGRNALGRSAPNPMVGALLTHGDTIIGSGYTSAFGGPHAEVNAIRSVADPG 64

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +   +T YVTLEPC H+G++PPC   IIE GIRRVVV + DP  +V+G+G+  L + G  
Sbjct: 65  KLPDSTLYVTLEPCCHHGKTPPCTDRIIESGIRRVVVGLPDPHDKVAGQGIAQLREAGCQ 124

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM------AGCGSVPITGFI 178
           +   +     +     +LT   + R +I LK A S D  +           G   ITG  
Sbjct: 125 VEVGVAADACREHHKRFLTLHEKGRPYIVLKWAQSPDGFLAPDPEVRGESTGPWWITGRE 184

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           S+  VH  R Q  AILVG  T  ADDP+LT R        P+R++LDP  +     +++ 
Sbjct: 185 SRQLVHKWRTQESAILVGWRTAAADDPQLTSR--DWAGKDPLRVLLDPSGRAPEGLRLLD 242

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
              +  + ++     P    + R +NI +       L+ L   L  RGV S+LVEGGA  
Sbjct: 243 -GKVPTLRVLHTGQQP--TGSARVENIFLEPGPGF-LRALCRELRERGVLSILVEGGAHT 298

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
             SF+++ L D   ++     +  GG+ +P   G L  N         G+D    + 
Sbjct: 299 LGSFLSAGLWDEARVFTGPRPL-NGGLRAPALSGRLVANTAS------GADTLTLWR 348


>gi|152964097|ref|YP_001359881.1| riboflavin biosynthesis protein RibD [Kineococcus radiotolerans
           SRS30216]
 gi|151358614|gb|ABS01617.1| riboflavin biosynthesis protein RibD [Kineococcus radiotolerans
           SRS30216]
          Length = 338

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 118/354 (33%), Positives = 168/354 (47%), Gaps = 34/354 (9%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D   M+ A+  +   +G TS NP V C+++   G V G G     G PHAEV AL  AG+
Sbjct: 3   DREVMARAVALAARGLGTTSPNPVVGCVVLDAAGEVAGEGWHERAGGPHAEVNALAAAGD 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            ARG TAYVTLEPC+H GR+ PC Q ++  GI RVV  V DP     G   +  +    +
Sbjct: 63  RARGGTAYVTLEPCNHTGRTGPCVQALLRAGIARVVFAVADPGALAGGGARELRAAGVEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V  ++  E +    A+LT     R H+  K A + D     A   S  I+   S+ QVH 
Sbjct: 123 VAGVLAEEAERVNEAWLTSARRHRPHVLWKFAATLDGRSAAADGTSRWISSAASRGQVHD 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           LR + DA++ G GTVLADDP LT R     L    P+R+++D   ++   + ++  +  A
Sbjct: 183 LRRRVDAVVAGSGTVLADDPRLTAREPDGTLSARQPLRVVVDRRGRVPATAAVLDGS--A 240

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P ++ T                            LL  L  RGV S+L+EGG  +A +F+
Sbjct: 241 PTLVSTAA----------------------TPADLLAELHERGVVSVLLEGGPTLAGAFL 278

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCL 352
            + LVD +  Y +  ++G G  P+ L    +      V  D       G DV L
Sbjct: 279 AAGLVDRVTAYVAPTLLGAG--PAALAGTGITTIADAVGLDVDDVSVVGGDVRL 330


>gi|294900049|ref|XP_002776874.1| riboflavin-specific deaminase, putative [Perkinsus marinus ATCC
           50983]
 gi|239884075|gb|EER08690.1| riboflavin-specific deaminase, putative [Perkinsus marinus ATCC
           50983]
          Length = 332

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 118/309 (38%), Positives = 165/309 (53%), Gaps = 3/309 (0%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI-GRGVTAYGGCPHAEVQALEEAGE 65
           D  FM  AL  S      T  NP V C++V+ G V+ G+G     G PHAEV AL +  +
Sbjct: 11  DEDFMRMALVESEEGRMTTPPNPWVGCILVQHGQVVVGKGHHVRKGGPHAEVNALRDMIQ 70

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
                TAYVTLEPCSHYG +PPC + +IE G+ RVVV V+DPD +VSGRG+Q + + G+ 
Sbjct: 71  SGSTLTAYVTLEPCSHYGSTPPCCEALIEVGVGRVVVGVEDPDPKVSGRGIQRMREAGVD 130

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +    +  E +  L AYL ++      +  K A S + M+      S  ITG  ++   H
Sbjct: 131 VKTGCLTGEIRESLRAYLKQRAMGLPLVVGKAAASLNGMVCCENGSSQWITGREAREDSH 190

Query: 185 L-LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
             LRA S AI+VG+GTVLADD  LT R     E  P+R++LDP  ++   +KI+ T    
Sbjct: 191 RTLRALSQAIVVGVGTVLADDCSLTVRGVEGLEKQPLRVVLDPSARILRTAKILNTEEAP 250

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            +++V    D           + +      DL  +L  L  RGV  +LVEGGA     FI
Sbjct: 251 TLVVVGRGADRSGLEKVEILEVELDQNGELDLGGVLRHLADRGVFQVLVEGGAKTLTKFI 310

Query: 304 NSRLVDSII 312
             ++VD ++
Sbjct: 311 EKKMVDELV 319


>gi|304383732|ref|ZP_07366191.1| riboflavin biosynthesis protein RibD [Prevotella marshii DSM 16973]
 gi|304335256|gb|EFM01527.1| riboflavin biosynthesis protein RibD [Prevotella marshii DSM 16973]
          Length = 315

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 102/363 (28%), Positives = 153/363 (42%), Gaps = 58/363 (15%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  ++ D ++M   L+ +         NP V  +IV +  +IG G     G  HAEV A 
Sbjct: 1   MSQATTDEKYMRRCLQLAECGRENAKPNPMVGAVIVVENRIIGEGYHVRYGEAHAEVNAF 60

Query: 61  EEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
                +       AT YV+LEPC+H G++PPC + IIE G+ RVVV   DP  +V GRG+
Sbjct: 61  ASICPKDAALLPSATLYVSLEPCAHQGKTPPCTRLIIEKGVGRVVVGCIDPFAKVQGRGI 120

Query: 117 QWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
           + L + GI V   ++E+E       ++  Q   R +I LK A + +  +         ++
Sbjct: 121 RMLQEAGIEVTLGVLEAECLALNRRFIVCQHHCRPYIILKWAQTTNGFLDDNNHAMQ-LS 179

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
              ++  VH LRA  DAIL+G  T   + P LT R       +P RI+L     +     
Sbjct: 180 TPFTRMLVHQLRADVDAILIGRHTDEREHPALTVR--DWSGKNPRRIVLTHKLNI----- 232

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
                                                    +L+  L   GV SLLVEGG
Sbjct: 233 ----------------------------------------HQLMNDLYTEGVQSLLVEGG 252

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           A    SF+N+ L D I +  + +V+  G   +PL      KN        +  ++   YI
Sbjct: 253 ATTHQSFLNAGLWDEIRVETAPVVVTNGTKAAPL-----PKNIQIANTKEYDGNLITSYI 307

Query: 356 GKN 358
             +
Sbjct: 308 KTD 310


>gi|312139593|ref|YP_004006929.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase ribg [Rhodococcus equi 103S]
 gi|311888932|emb|CBH48245.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase RibG [Rhodococcus equi 103S]
          Length = 336

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 121/363 (33%), Positives = 177/363 (48%), Gaps = 37/363 (10%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALE 61
           ++S DA  M  A+  S    G TS NP V  +I+   G V+G G T   G PHAEV AL 
Sbjct: 1   MTSLDAA-MRLAIDASEAARGSTSPNPPVGAVILDASGAVVGVGATRPPGGPHAEVVALA 59

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AGE ARG TA VTLEPC+H GR+ PC++ +I+ GI  V   V DP+   +  G   L  
Sbjct: 60  AAGERARGGTAVVTLEPCNHQGRTGPCSRALIDAGIAAVHYSVADPNP-AAAGGADTLRA 118

Query: 122 KGIIVDR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             I V    + +   +  L A+L RQ   R H+T K A + D     A   S  ITG  +
Sbjct: 119 ARIEVTGGLLADDAERGPLRAWLHRQRTGRPHVTWKFAATLDGRSAAADGTSQWITGPEA 178

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKII 237
           + +VH  RA+ DAI+VG GTVLADDP LT RL    L  H P+R+++     +   ++++
Sbjct: 179 RARVHADRARLDAIVVGTGTVLADDPWLTARLPDGSLAPHQPLRVVVGNRP-VPSTARVL 237

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
             A  AP ++                          D+ ++L+ L  +    +LVEGG  
Sbjct: 238 DDA--APTLV----------------------LRTHDVGEILSALADQ--DDVLVEGGPR 271

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           +A +F+ + +VD +  Y + +V+G G      + +        F     +  G D+ L  
Sbjct: 272 LAGAFLAAGVVDRVQAYIAPVVLGAGSHAVEDAGVSTITEALRFRRENVEVLGDDLLLNL 331

Query: 355 IGK 357
           I +
Sbjct: 332 IPR 334


>gi|242042489|ref|XP_002468639.1| hypothetical protein SORBIDRAFT_01g049430 [Sorghum bicolor]
 gi|241922493|gb|EER95637.1| hypothetical protein SORBIDRAFT_01g049430 [Sorghum bicolor]
          Length = 396

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 102/358 (28%), Positives = 165/358 (46%), Gaps = 23/358 (6%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             DA++M   +  +R   G TS NP V C+IV+DG V+G G     G PHAEV AL +AG
Sbjct: 50  DLDAQYMRRCVELARKAAGHTSPNPMVGCVIVRDGRVVGEGFHPKAGQPHAEVFALRDAG 109

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
             A  ATAYV+LEPC+HYGR+PPC + +I   ++ VVV + DP+  V+ +G++ L   GI
Sbjct: 110 NLAENATAYVSLEPCNHYGRTPPCTEALINAKVKEVVVGMTDPNPIVASKGIEKLQGAGI 169

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISKNQ 182
            +   + E+  +    AY+ R +  ++  TL+  +S +  +    G G+    G+ S   
Sbjct: 170 NVRVGVEEALCRKLNEAYIHRMLTGKAFATLRATLSMNGIVTNQIGKGADQSGGYYS--- 226

Query: 183 VHLLRAQSDAILVGIGTVLADDPEL-TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
              L  + D +++     LA    L   R  G     P+ II+       L    +    
Sbjct: 227 --QLMKEYDGVIISSD--LAKMSSLPLSREAGAN--QPLYIIIAQGENSRLHIPSLSEEH 280

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV------EGG 295
            + VI++   D PV A       + +      DL+ +L +L  RG+ S+LV      E  
Sbjct: 281 ASKVIVLA--DSPVTAAP---AGVEVAVLRQIDLESILQLLAQRGLCSVLVDFREATESF 335

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           A++ + F   +LV  +++          G+ +    G        +        V +E
Sbjct: 336 ASLLNDFQEDKLVQKVVVEILPFWFASEGLSNLAFGGSQSFPLKNLEHREVNGGVLME 393


>gi|298250252|ref|ZP_06974056.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM
           44963]
 gi|297548256|gb|EFH82123.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM
           44963]
          Length = 372

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 120/367 (32%), Positives = 178/367 (48%), Gaps = 19/367 (5%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D   M  A+  +    G T+  P V  ++V+DG+V+G+G T+    PHAEV AL +AGE
Sbjct: 2   DDQEAMRLAIAHAHSVEGRTAPRPPVGAVVVRDGVVVGQGATSPPYGPHAEVHALNDAGE 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            ARGA  YVTLEPC     +PPC + I+  GIR V+V   DP+  VSG+GL  L + G+ 
Sbjct: 62  LARGADLYVTLEPCCVTIHTPPCTRAILAAGIRHVIVSSLDPNPLVSGQGLTQLREAGVE 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   +   E    +  + T   ++R ++T K A++ D  I      +  I+G  ++  VH
Sbjct: 122 VTVGVGAEETDEIIRPFATFIRQQRPYVTAKWAMTLDGKIATHSSDAYWISGSEARRWVH 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNG-------LQEHSPMRIILDPHFKLSLDSKII 237
            LR + DAILVG GTV ADDP LT RL              P+R++L     L   SK++
Sbjct: 182 NLRDRVDAILVGSGTVRADDPMLTVRLTDEERLYARAPRQGPLRVVLASQGALPAQSKLL 241

Query: 238 KTALLAPVIIVTENDDPVLALA-FRKKNINIIY-----CDCRDLKKLLTILVGRGVTSLL 291
           +  L +   I+   D PV      R   + +I          DL   L+ L  +GV  +L
Sbjct: 242 QPDLASDTCIIVGEDCPVEQQQRLRDTGVEVIQVASNNTSQLDLTSALSALAQKGVMHVL 301

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYF 346
           +EGG +   S  + + +D +  + +  ++G     SPL    L           VR    
Sbjct: 302 IEGGNSTLGSAFDQQRIDHVAAFIAPKLVGGEAALSPLGGKGLAFMREALQLQQVRIQII 361

Query: 347 GSDVCLE 353
           G DV +E
Sbjct: 362 GEDVLIE 368


>gi|303327265|ref|ZP_07357707.1| riboflavin biosynthesis protein RibD [Desulfovibrio sp. 3_1_syn3]
 gi|302863253|gb|EFL86185.1| riboflavin biosynthesis protein RibD [Desulfovibrio sp. 3_1_syn3]
          Length = 385

 Score =  272 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 105/373 (28%), Positives = 170/373 (45%), Gaps = 25/373 (6%)

Query: 3   VSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           ++  D A FM  A+  +         NP+V  ++++DG V+ RG     G  HAEV  L+
Sbjct: 1   MTEQDFAPFMREAIALAEQGRWKACPNPTVGAVLLRDGRVVARGWHHEAGQDHAEVDCLK 60

Query: 62  EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           +A   G + +G T  VTLEPC+H G++PPC Q I++ GI RVV+ + DP+ + +G G   
Sbjct: 61  DAATRGVDPKGCTLVVTLEPCNHQGKTPPCTQAILDAGISRVVMGLADPNPQAAG-GAAR 119

Query: 119 LSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L   G+ V   + E+E +  +  +L  Q   R ++ LK+A + D  I      S  I+  
Sbjct: 120 LRDTGMEVLGPVCEAECRDLVADFLVWQSTDRPYVILKMAATLDGRIATRNGQSQWISCE 179

Query: 178 ISKNQVHLLRAQS----DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS-L 232
            S+++V  LRA       A+LVG GT  AD+P LT R +G     P+  +L         
Sbjct: 180 TSRHEVQELRAGLGLSGGAVLVGGGTFRADNPRLTAREDGYDGPQPLACLLTSRLPKPDA 239

Query: 233 DSKIIKTALLAPVII-VTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTIL-VGR 285
           D  ++K      + +          A A R+  + ++          D  +L   L    
Sbjct: 240 DFHLLKERPGQTIFLASPAAAASTTAQALRQMGVRVLALGPGPQGGPDFPELFRALRREL 299

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE------KNFM 339
           G   +L EGG  +A + + +  VD   L+ + +++G+     PL  G             
Sbjct: 300 GCPYVLCEGGGRLALALLEAGFVDEFHLHLAPMILGDSDA-RPLFAGRAPLSLDEALRLR 358

Query: 340 CVRRDYFGSDVCL 352
             R    G+DV +
Sbjct: 359 VSRTGLCGNDVHI 371


>gi|330888055|gb|EGH20716.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 276

 Score =  272 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 102/273 (37%), Positives = 146/273 (53%), Gaps = 14/273 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            ++ D  +M+ AL  +R  +  T  NP V C+IV+DG ++G G     G PHAEV AL +
Sbjct: 5   QAALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQ 64

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A E ARGATAYVTLEPCSH GR+PPCA  ++  G+ RVV  + DP+  VSGRGL  L   
Sbjct: 65  ASELARGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPEVSGRGLLRLMNA 124

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++ESE +     +L R    + +I +K+A+S D    MA   S  ITG  +++
Sbjct: 125 GIGVQCGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARS 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRAQS  +L G  TVLAD   LT R + L              P+R+++D   ++ 
Sbjct: 185 AVQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLRVP 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
           LD+   +       ++VT            + +
Sbjct: 245 LDAPFFQAGSA---LVVTCAAASARGRYQEEGH 274


>gi|283851293|ref|ZP_06368575.1| riboflavin biosynthesis protein RibD [Desulfovibrio sp. FW1012B]
 gi|283573243|gb|EFC21221.1| riboflavin biosynthesis protein RibD [Desulfovibrio sp. FW1012B]
          Length = 383

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 98/372 (26%), Positives = 176/372 (47%), Gaps = 21/372 (5%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
           + DA FM+ AL  +    G  + NP V  ++V+DG ++  G     G PHAEV+ L +A 
Sbjct: 2   ASDADFMARALVLAERGRGFVTPNPRVGAVLVRDGAIVAEGWHKVFGGPHAEVECLHDAE 61

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
             G +  GAT YVTLEPC+H+G++PPC++ +++  + RVVV   DP+  V+G G + L Q
Sbjct: 62  KKGVDPAGATMYVTLEPCNHFGKTPPCSRTLLDARVGRVVVGCLDPNP-VAGGGAELLRQ 120

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            G+ +   ++  E +  +  ++  +   R  +T+K+A++ D  I      S  ++G  S+
Sbjct: 121 GGVDVTVGVLALECRDAIADFVVWKTLGRPFVTVKLAMTLDGRIASRTGDSGWVSGEASR 180

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNG---LQEHSPMRIILDPHFKLSLDSKII 237
            +VH +RA   A+LVG GT+ AD+P LT RL+G    +   P+ + +            +
Sbjct: 181 ARVHAMRAACQAVLVGGGTLAADNPRLTHRLDGGPLARNPQPLAVAVTRRLPAPDGPLAL 240

Query: 238 KTALLAPVIIVT--ENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTS 289
                  ++I T         A       + +     +       L  L+ +     V +
Sbjct: 241 VRDRPEQLVIFTGKAAAAGPAAAKLTALGVRVFGLPEKADGGLDLLPGLVRLRTEANVYT 300

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRD 344
           +L EGG  +A + +   L+D + ++ +  V+G+    +      + +      F  V  +
Sbjct: 301 VLCEGGGGLAATLLAQGLLDELTVFYAPKVLGDDKAVAGFSGLAVPRMAGAAPFRFVATE 360

Query: 345 YFGSDVCLEYIG 356
             G D+ +    
Sbjct: 361 RVGEDLMVTARP 372


>gi|312869208|ref|ZP_07729380.1| riboflavin biosynthesis protein RibD [Lactobacillus oris
           PB013-T2-3]
 gi|311095229|gb|EFQ53501.1| riboflavin biosynthesis protein RibD [Lactobacillus oris
           PB013-T2-3]
          Length = 352

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 113/350 (32%), Positives = 170/350 (48%), Gaps = 12/350 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGE 65
           D   M  A+  ++     T  NP V  ++VK+G V+  G T   G PHAE  AL + A  
Sbjct: 3   DEDLMGLAVAAAKQAGVATWRNPGVGAVVVKNGHVLATGHTQPYGGPHAERDALSQLAPG 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A GAT YVTLEPC+HYG+ PPC Q II+ GI+RVV+   DP   V+G+G+  L   GI 
Sbjct: 63  QAAGATLYVTLEPCNHYGKQPPCTQLIIDSGIQRVVIAQLDPHALVTGKGVAALRHHGIE 122

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V  +   +       Y       R  +TLK AVS D  I         IT      +VH
Sbjct: 123 VVTGIGTQQAAQVNPHYNFFYRHHRPWVTLKQAVSLDGRISAGPGQRTAITNQAVYQRVH 182

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS--LDSKIIKTALL 242
             RA    I++G  T + DDP L      L  H P+R++LD   +L+   D ++ +   L
Sbjct: 183 QERAGFQGIVIGSTTAIVDDPTL-VPTPQLT-HLPIRVVLDRRGRLADYPDRQLFRDG-L 239

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           AP  + TE       L  R     +       +  ++ +L   GV SL VEGG  + ++F
Sbjct: 240 APTWVFTERKSLPDRLGPRA---WVFVLPDCSVPAVVQVLAEEGVQSLYVEGGPTIQNAF 296

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
             + LV+ ++ Y S +++G+ G+P        +  F   + +  G++V +
Sbjct: 297 ARAGLVEEVLTYLSPVMLGQEGVPGFAPPETWK--FQDQQLELLGNNVRI 344


>gi|149186473|ref|ZP_01864786.1| riboflavin-specific deaminase/reductase [Erythrobacter sp. SD-21]
 gi|148830062|gb|EDL48500.1| riboflavin-specific deaminase/reductase [Erythrobacter sp. SD-21]
          Length = 329

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 138/362 (38%), Positives = 180/362 (49%), Gaps = 46/362 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  ++ DAR++ AA R +     L   NP+V CL+V  G VI RG T  GG PHAE  AL
Sbjct: 1   MIPTASDARWLDAAARLASRGRPLARPNPAVGCLLVNKGRVIARGWTREGGRPHAEAVAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           E+AG  ARGATAYVTLEPC+H   R P C+  +++ G+ RVVV   DPD R SG GL+ L
Sbjct: 61  EQAGSAARGATAYVTLEPCAHRSTRGPACSDLLVKAGVARVVVGALDPDPRTSGEGLERL 120

Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
            + GI V +      K  L  YL R    R H+TLK+A+S D  I MA   S  ITG  +
Sbjct: 121 RRSGIEVSQDYTEAVKASLAGYLIRAHRGRPHVTLKLALSLDGCIAMADGSSQWITGEEA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  VH  RA SDAILVG GT   D P L  RL GL++ SP R++L     +  D      
Sbjct: 181 RAHVHSRRAMSDAILVGGGTWRQDKPHLDVRLPGLEDRSPARVLLSRG--VPPD------ 232

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
                                    + +I     D  ++  +    GV  L VEGGA  A
Sbjct: 233 ------------------------GVKVI----NDPAQIAQL---EGVHYLYVEGGAGAA 261

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG-----YLEKNFMCVRRDYFGSDVCLEY 354
            SF+ + LVD + +YR+ I+IG  G P+  + G          ++       GSD    Y
Sbjct: 262 ASFVRADLVDRLEIYRAPILIG-NGAPALGDIGLGSLAEAHGRWVLAETRRLGSDTYTAY 320

Query: 355 IG 356
             
Sbjct: 321 RR 322


>gi|260655866|ref|ZP_05861335.1| riboflavin biosynthesis protein RibD [Jonquetella anthropi E3_33
           E1]
 gi|260629482|gb|EEX47676.1| riboflavin biosynthesis protein RibD [Jonquetella anthropi E3_33
           E1]
          Length = 358

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 121/358 (33%), Positives = 177/358 (49%), Gaps = 15/358 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  +    G TS NP V C+IV+DG VI  G     G PHAE  AL  AGE A GA
Sbjct: 1   MRMALSLAARGAGTTSPNPMVGCVIVRDGHVIATGWHRAPGAPHAEAAALAAAGERAEGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           T YV LEPC+H GR+PPCA  ++   + RVV  + DP  +V+G+G+  L + GI VD  +
Sbjct: 61  TVYVNLEPCAHQGRTPPCAPALVSAKVVRVVAGLVDPFPQVAGKGIGILREAGIEVDCPV 120

Query: 131 ESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            +E   +    +L+    KR  +TLKIA S D +  +    S  ITG  ++   HLLR++
Sbjct: 121 LAEESAWLNRGFLSAVKRKRPWVTLKIASSLDGITALPDGTSQWITGPTARKLGHLLRSE 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           +DA++VG  T   D P L  R   +   SP  +++   F     + ++  +  A      
Sbjct: 181 NDAVMVGGTTARRDKPRLDVR--DVDGPSPRPVVVSRDFS---AAMLLPRSGDALAYAAD 235

Query: 250 ENDDPVLALAFRKKNINIIYCD-CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
               P      + +   +       DL  +L  L  RGV  LLVEGG  +A S +   LV
Sbjct: 236 GCPIPDK---LKGRAATVPTGPGGLDLSAVLADLCRRGVNRLLVEGGGTLASSLLQEGLV 292

Query: 309 DSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRR--DYFGSDVCLEYIGKNLCLQE 363
           D + ++++  V+G+G G+   L    L   +  VR        D+ +E  G + C Q+
Sbjct: 293 DQLSVFQAPCVLGKGTGMAQELLTESLLARWNFVRTAERRVDDDLWIE--GVSPCSQD 348


>gi|317484774|ref|ZP_07943673.1| riboflavin biosynthesis protein RibD [Bilophila wadsworthia 3_1_6]
 gi|316923981|gb|EFV45168.1| riboflavin biosynthesis protein RibD [Bilophila wadsworthia 3_1_6]
          Length = 379

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 111/376 (29%), Positives = 173/376 (46%), Gaps = 22/376 (5%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
             FM  A   +       + NP+V  ++V+DG+ + RG     G  HAEV+ L++A   G
Sbjct: 6   ESFMREAAELAERGRWSAAPNPTVGAVLVRDGVAVARGWHTAYGKSHAEVECLKDAEAKG 65

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            +    T  VTLEPC+H G++PPC + +I  GIR VV+ + DP+ + +G G++ L++ G+
Sbjct: 66  VDPSACTLVVTLEPCNHQGQTPPCTEAVIAAGIRHVVIGLRDPNPKAAG-GMERLAEAGV 124

Query: 125 IVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V+  +  E    L   +L  Q  KR ++ LK+A++ D  I      S  ITG  ++ QV
Sbjct: 125 EVEAGVCEELCRDLVADFLIWQTTKRPYVMLKLAMTLDGRIATRTGHSRWITGETARRQV 184

Query: 184 HLLRAQS----DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           H LRA       AILVG  T+  D+P LT RL+   E  P+ + +           + K 
Sbjct: 185 HELRANVGRAGGAILVGGNTLHTDNPLLTARLDDPVERQPLAVSISSRVPAPDSLLLFKE 244

Query: 240 ALLAPVIIVTEN-DDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGR-GVTSLLVE 293
                +   T +      A   R++ + I   D      DL ++L  L    G   +L E
Sbjct: 245 RPTETIFFTTASGAATPRAAQLRERGVRIRGLDRWKSGEDLVQILEYLRQEAGCPYVLCE 304

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN------FMCVRRDYFG 347
           GG  +  S + + LVD   L+ +  V+G+     PL +G              VR +  G
Sbjct: 305 GGGRLGLSLLEAGLVDEFHLHIAPKVLGDNDA-RPLFDGRTPLELDEALSLRLVRMEPCG 363

Query: 348 SDVCLEYIGKNLCLQE 363
            D  L +     C Q 
Sbjct: 364 EDGHLIFRPVRACSQA 379


>gi|333029739|ref|ZP_08457800.1| riboflavin biosynthesis protein RibD [Bacteroides coprosuis DSM
           18011]
 gi|332740336|gb|EGJ70818.1| riboflavin biosynthesis protein RibD [Bacteroides coprosuis DSM
           18011]
          Length = 348

 Score =  272 bits (695), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 100/315 (31%), Positives = 158/315 (50%), Gaps = 12/315 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
            ++M   ++ + +     + NP V  +IV  GI+IG G     G  HAEV A+    ++ 
Sbjct: 4   EKYMKRCIQLASYGKLHAAPNPLVGAVIVHKGIIIGEGFHIQSGKAHAEVNAINSVKDQS 63

Query: 67  -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
               +T +V+LEPCSH G++PPC   II   I  VV+   DP  +V+GRG+  L ++GI 
Sbjct: 64  LLPESTIFVSLEPCSHTGKTPPCVDLIINKKIPHVVIGCQDPFSKVAGRGIAKLKEQGIK 123

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG--MAGCGSVPITGFISKNQ 182
           +   ++E+E K  +H +   Q EKR +I LK A S D  I    +      ++  +S   
Sbjct: 124 VEIGILENECKELIHRFYIFQEEKRPYILLKWAESADGYIDQIRSSGTPTLLSSPLSSIL 183

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H  RA+ ++ILVG  T L D+P LT R     +  P+R+I+D +  L     I   +  
Sbjct: 184 THKRRAEVESILVGRRTALLDNPSLTTR--HWYQKDPIRLIIDRYLSLPNTLHIFDGS-- 239

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            P  I TE D       F+ +    +  +   L ++L  +  + + S+LVEGGA +  SF
Sbjct: 240 TPTFIFTEVD---KKSNFKNRTYIQLDFNADILTQILNWMYFQNIQSVLVEGGAQLHQSF 296

Query: 303 INSRLVDSIILYRSQ 317
           I++ L D   +  S 
Sbjct: 297 IDADLWDETHIEESP 311


>gi|170017119|ref|YP_001728038.1| riboflavin biosynthesis protein RibD [Leuconostoc citreum KM20]
 gi|169803976|gb|ACA82594.1| Riboflavin biosynthesis protein RibD [Leuconostoc citreum KM20]
          Length = 347

 Score =  272 bits (695), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 98/343 (28%), Positives = 156/343 (45%), Gaps = 21/343 (6%)

Query: 25  TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR--GATAYVTLEPCSHY 82
           T  NP V  +IVK+G ++  G     G  HAE+ A E   ++     +T YVTLEPC   
Sbjct: 22  TYENPRVGAIIVKNGQILATGYHHSFGAAHAEINAFENLRDQTDIVDSTMYVTLEPCFVT 81

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
           G+   CA  I + G++RVVV   DP+    GR + +L Q GI VD +   + +I    + 
Sbjct: 82  GKVGACALAIAQWGVKRVVVGSFDPNPDTHGRSVTFLRQAGIRVDVLGTEDSQILNPGFY 141

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
                   ++ LK+A S ++ +  +   S  IT  ++   VH  RA   AIL+G  T+L 
Sbjct: 142 HYFERHLPYVQLKLAESANHFVASSQGQSTKITDRLADIDVHKERASKSAILIGSETMLI 201

Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
           D P LT R   +    P+R+++D   +L               +I T N D         
Sbjct: 202 DQPNLTVRHVPINHPQPLRVVIDRRGRLQNK----MDRATNNWLIFTTNTDFAKQYDN-- 255

Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
                +      L  +LT L  + + S++VEGG ++  +F+ + L    I+Y +  ++ E
Sbjct: 256 -----VLLMSHGLLSVLTSLASKNIQSVMVEGGPSLITAFLKANLWQEFIVYTADSILSE 310

Query: 323 GGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN--LCLQE 363
            G+PS      ++  F  V     G+ +   Y+      CLQE
Sbjct: 311 DGVPS------VQPLFNSVSSYRVGNTLKSRYLNDRSVSCLQE 347


>gi|241888469|ref|ZP_04775779.1| riboflavin biosynthesis protein RibD [Gemella haemolysans ATCC
           10379]
 gi|241864861|gb|EER69233.1| riboflavin biosynthesis protein RibD [Gemella haemolysans ATCC
           10379]
          Length = 356

 Score =  272 bits (695), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 115/362 (31%), Positives = 169/362 (46%), Gaps = 14/362 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAGE 65
             FM  AL  ++     T TNP V  +IVKD  +I RG     GC HAE  A+   E  E
Sbjct: 3   EYFMKLALLEAKRGTKYTHTNPIVGAIIVKDDEIIARGSHLRYGCEHAEKNAISTCETPE 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +   +T YVTLEPC+H G+ PPC   I+E GI +VVV   DP+  VSG+G+++L   GI 
Sbjct: 63  KLFNSTLYVTLEPCNHKGKQPPCTDTIVEMGISKVVVAQLDPNPLVSGKGIKYLQDNGIE 122

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           ++  ++E E     +AY     EKR ++ LK A S D  +         ITG    + V 
Sbjct: 123 VITGVLEKEAYNLNYAYNLFHSEKRPYVVLKQATSLDGKLAFTNKR-TQITGKDVYDFVR 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD-SKIIKTALLA 243
             R    AILVG  TVL D+P+LT          P RI+LD    +    +  +    L+
Sbjct: 182 NERDNYQAILVGARTVLTDNPKLT--GANTSLFPPKRIVLDADGDIFEHNNLNLFNNSLS 239

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            VI+ T+             ++ II      +K++L+ +   G+ S+ VEGG  +   F+
Sbjct: 240 EVIVFTKQ-----KCKNLPSHVTIITPKEFSIKEILSEVAKLGIQSVYVEGGPNIHDQFL 294

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK--NFMCVRRDYFGSDVCLEYIGKNLCL 361
            S   D +I Y S I++G     S        +       +    G D+ +     + CL
Sbjct: 295 ASGYWDEVITYISPILLGGNNTSSFTSNRITNEKIQLHDTKITKLGEDIRVSGRRVSQCL 354

Query: 362 QE 363
           Q+
Sbjct: 355 QD 356


>gi|323138569|ref|ZP_08073637.1| riboflavin biosynthesis protein RibD [Methylocystis sp. ATCC 49242]
 gi|322396203|gb|EFX98736.1| riboflavin biosynthesis protein RibD [Methylocystis sp. ATCC 49242]
          Length = 376

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 141/370 (38%), Positives = 195/370 (52%), Gaps = 12/370 (3%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           +P  + D  FM+AAL   R ++G T+ NP+V  L+V+DGI+I RG TA GG PHAE  AL
Sbjct: 7   IPYVATDEAFMAAALALGRRNMGRTAPNPAVGALVVRDGIIIARGWTAKGGRPHAEAIAL 66

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE ARGAT YVTLEPCSH+G +PPC   II  GI RVV  ++DPD RV+GRG Q L 
Sbjct: 67  AAAGEAARGATLYVTLEPCSHHGSTPPCVDAIIASGIARVVTAMEDPDPRVAGRGHQILR 126

Query: 121 QKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV-PITGFI 178
             GI V    E+      H  ++ R  + R  +TLK+A + D     A       ITG I
Sbjct: 127 DAGIDVFIGPEAAAARADHLGHILRVTKHRPMVTLKLAQTPDGYAAGAAHDPRLRITGPI 186

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           +    H+ RA  DAI+VG GT   DDP +T RL GL+  +P+R++LD    LS  S++  
Sbjct: 187 ADAFTHVHRALHDAIMVGAGTAREDDPLMTVRLPGLEGVTPLRVVLDEKLALSPRSRVAS 246

Query: 239 TALLAPVIIVTENDDPVL--ALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLV 292
           T+   P++++T  D P              ++     + K      L +L  RG+T +  
Sbjct: 247 TSRETPLLVITALDVPDADVHRFMDATGAEVVKVPMYEGKLDLLAALRLLAERGITRVFS 306

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLE--KNFMCVRRDYFGS 348
           EGG  VA S + + L D +IL+     +G  G P  +P     LE    +  +     G+
Sbjct: 307 EGGPRVAESLLTAGLADEVILHMGVKPLGRPGQPALTPKARTALENVSRYRLIESRMLGA 366

Query: 349 DVCLEYIGKN 358
           D    Y   +
Sbjct: 367 DQMTRYARAD 376


>gi|88856442|ref|ZP_01131100.1| riboflavin-specific deaminase [marine actinobacterium PHSC20C1]
 gi|88814309|gb|EAR24173.1| riboflavin-specific deaminase [marine actinobacterium PHSC20C1]
          Length = 345

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 112/352 (31%), Positives = 169/352 (48%), Gaps = 34/352 (9%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEE 66
            + M   L  +     +T  NP V C++V D G ++  G     G PHAEV AL + G  
Sbjct: 11  EKLMLHGLSLASRG-PITGGNPQVGCVLVNDAGEIVAEGWHHGAGTPHAEVDALTKLGGN 69

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A G TA VTLEPC+H+GR+ PC++ +I+ G+ RVV  V DP VR  G   Q L   G+ V
Sbjct: 70  AAGLTAVVTLEPCNHHGRTGPCSEALIDAGVSRVVYAVSDPGVRSGGGS-QRLRDAGVEV 128

Query: 127 DRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
                +++ + FLH++LT    +R H+T+K A + D     A   S  ITG  ++  VH 
Sbjct: 129 IGGASQADAEEFLHSWLTATRLQRPHVTVKWASTLDGRAAAADGTSQWITGTAARQHVHE 188

Query: 186 LRAQSDAILVGIGTVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
            RA++DAI+VG GTVLADDP LT R     L E  P  ++L    ++   +++       
Sbjct: 189 QRARADAIVVGTGTVLADDPSLTARGDAGELLEWQPQPVVLGRR-EIPAAAQL------- 240

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
                            R     +   D  DL   L+ L   G+  + VEGG  +A +FI
Sbjct: 241 -----------------RHHPKQLRQFDGGDLNAALSALFEAGIRRVFVEGGPTIASAFI 283

Query: 304 NSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCL 352
            + L D +++Y +  ++G   +      +      K+         G+DV +
Sbjct: 284 AAGLADELLIYLAPKLLGGPKVALGELGVATMAEAKDLSITELRPLGNDVLI 335


>gi|168704914|ref|ZP_02737191.1| riboflavin biosynthesis protein RibD [Gemmata obscuriglobus UQM
           2246]
          Length = 355

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 109/350 (31%), Positives = 169/350 (48%), Gaps = 11/350 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  AL  +    G    NP V  +++   G  +G G     G PHAEV AL+ AG  ARG
Sbjct: 1   MRHALALAARGRGAVEPNPMVGAVVLDPTGKPVGEGWHQKFGGPHAEVFALQAAGARARG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
            T  VTLEPC H+G++PPC   ++  G+ RVV  + DP  RV+G GL  L   G+ +   
Sbjct: 61  GTLLVTLEPCCHHGKTPPCTDAVLRAGVARVVAAMADPFPRVAGGGLALLRAAGVDVQVG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + E++ +     YL      R  +  K A++ D  +      S  I+G  S+ +VH LR 
Sbjct: 121 LCEADARALNAPYLKLLSTGRPWVHAKWAMTLDGKLAARTGDSKWISGAESRRRVHELRG 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DAILVG GTV+ADDP LT R  G+    P R++L    +L    ++  TA  APV++ 
Sbjct: 181 RLDAILVGRGTVVADDPLLTARPAGV--RVPARVVLTASGELPAACQLRATAREAPVLVY 238

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           T N  P     +      ++      L  +L  L  R  T++L+EGGA +  +  ++  +
Sbjct: 239 TAN--PGKLGGWAADGAEVVGFGELTLDAVLADLGRRRFTNVLLEGGAGLLGAARDADAI 296

Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-----GSDVCLE 353
           D   ++ +  V+G     +P+      +    +  +       G+DV + 
Sbjct: 297 DEFHVFIAPKVVGGSAALTPVGGTGAARMAEALTLEGVTFEPSGADVYVH 346


>gi|150026064|ref|YP_001296890.1| riboflavin biosynthesis protein RibD [Flavobacterium psychrophilum
           JIP02/86]
 gi|149772605|emb|CAL44088.1| Riboflavin biosynthesis protein RibD [Flavobacterium psychrophilum
           JIP02/86]
          Length = 335

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 95/357 (26%), Positives = 168/357 (47%), Gaps = 32/357 (8%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
            +++   +  ++  +     NPSV  +IV +  +IG G TA  G  HAEV A+     + 
Sbjct: 5   EKYIKRCIELAKNGLPAAMPNPSVGAVIVFENKIIGEGYTAAYGGNHAEVNAILSVKNKD 64

Query: 67  -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
               +T YV+LEPCSH+G++PPC   II+  I  VV+   D + +VSG+G++ L + G  
Sbjct: 65  LLAKSTIYVSLEPCSHFGKTPPCCDLIIKYKIPNVVIGTVDSNSKVSGQGIKKLIEAGAN 124

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM---AGCGSVPITGFISKN 181
           ++  ++E+E +     + T   +KR +I LK A ++D  I          V IT   S+ 
Sbjct: 125 VIVGILEAECRESNKRFFTFHEKKRPYIILKWAETKDQFIAPLLKNEQKPVWITNIYSRQ 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
             H  R +  AILVG  T + D+P L  R       +P RI+LD + ++  ++ I    +
Sbjct: 185 LAHKWRTEEQAILVGTQTAIDDNPRLDVR--DWTGKNPTRIVLDKNNRIPKENHIFD--I 240

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
                ++++                I Y +   L ++++ L    + S+++EGG     +
Sbjct: 241 RQKTFVISDK--------------TINYSENVAL-QIVSFLFDNNLQSVIIEGGRQTLQT 285

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           FI++ L D   ++  Q +    G  +P+           V+R    +D  L Y+  +
Sbjct: 286 FIDANLWDEARIFVGQELF-SSGTKAPVITS------KRVKRSKIDNDELLIYLNHD 335


>gi|182439882|ref|YP_001827601.1| putative riboflavin/cytosine deaminase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178468398|dbj|BAG22918.1| putative riboflavin/cytosine deaminase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 366

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 115/361 (31%), Positives = 173/361 (47%), Gaps = 12/361 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE 62
           ++ D   M  A+  +   +G TS NP V C+I    G V G G     G PHAEV AL  
Sbjct: 3   TAADITAMRRAISLAARGLGSTSPNPVVGCVITDAAGAVAGEGFHQRAGGPHAEVHALRA 62

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  ARG TAYVTLEPC H GR+ PC+Q ++  GI RVV  V DP+   +G G   L   
Sbjct: 63  AGGRARGGTAYVTLEPCDHTGRTGPCSQALLAAGISRVVYAVADPNPGAAGGG-DTLRHA 121

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+  +  ++  E +    A+LT     R ++  K A + D  I  A   S  IT   ++ 
Sbjct: 122 GVRAEGGLLADEAEAGNAAWLTSVRRGRPYVLWKYAATLDGRIAAADATSRWITSPEARA 181

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTA 240
            VH LRA++DA+LVG GT   DDP+L  R        P+R+++D +   +   ++++   
Sbjct: 182 DVHRLRAEADAVLVGSGTARTDDPQLAVR-GIDGATQPLRVVVDTNATAVKPGARVLDAT 240

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
               V +  +     L  A   +          DL  LL  L  RGV S+L+EGG  +A 
Sbjct: 241 AATLVAVADDAPAGHLPEAAVLRLPRAATGPGLDLDALLGALHERGVRSVLLEGGPTLAG 300

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355
           +F+ +  VD ++ Y + +++G G  P+ L +  +                 G D+ +  +
Sbjct: 301 AFVAAGKVDKVVGYLAPVLLGAG--PAALADAGISTIAGALRLDVTETVPIGPDLRITAV 358

Query: 356 G 356
            
Sbjct: 359 P 359


>gi|83593160|ref|YP_426912.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Rhodospirillum rubrum ATCC 11170]
 gi|83576074|gb|ABC22625.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Rhodospirillum rubrum ATCC 11170]
          Length = 367

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 137/356 (38%), Positives = 196/356 (55%), Gaps = 12/356 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  AL  +   +G    NP+V C++V   G V+GRG T  GG PHAE +AL+ AG  ARG
Sbjct: 1   MRTALGLAARGLGRVWPNPAVGCVLVDAQGRVVGRGWTQPGGRPHAEREALDRAGAAARG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           ATAYVTLEPCSH+G++PPCA  +I+ G+ RVV  + DPD RVSGRG   L   G++V+  
Sbjct: 61  ATAYVTLEPCSHHGKTPPCADALIDAGVVRVVAALGDPDPRVSGRGFAQLRAAGVVVETG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++  E +     +L  ++  R  +TLK A + D  I  AG  S  ITG  ++   HLLRA
Sbjct: 121 LLVDEARALNLGFLLHRLRGRPLVTLKAATTLDGRIATAGGDSQWITGPQARRYGHLLRA 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP-VII 247
             DAI +G+GT LADDP L+CRL GL++ SP+R++ D    L L   ++++A   P  II
Sbjct: 181 DHDAIAIGLGTALADDPLLSCRLAGLEDRSPLRVVFDSALALPLGGALVRSADRLPLWII 240

Query: 248 VTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            T         A  ++   I+  +        +   L+ L G+GVT LLVEGG  +A +F
Sbjct: 241 TTAAATAARRQALVERGAEILEVEADPRGRPTIAGALSALAGQGVTRLLVEGGGHLAAAF 300

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           + + LVD +  +R+  +IG  G+ +     ++       F        G D    Y
Sbjct: 301 LAADLVDRLAWFRAARLIGGDGLAAVAALGIDRLADSVQFSLEACQTLGDDRLELY 356


>gi|120602900|ref|YP_967300.1| riboflavin biosynthesis protein RibD [Desulfovibrio vulgaris DP4]
 gi|120563129|gb|ABM28873.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Desulfovibrio
           vulgaris DP4]
          Length = 377

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 109/366 (29%), Positives = 172/366 (46%), Gaps = 23/366 (6%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
           FM  A+  +       + NP+V  ++V+DG V+ RG     G PHAEV+ L +A   G +
Sbjct: 8   FMREAIALAERGRWYAAPNPTVGAVLVRDGEVVARGWHTGYGKPHAEVECLRDAASKGVD 67

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
               T  VTLEPC+H+G++PPC+  I++ GI RVVV + DP+  V+  G ++L   G+ V
Sbjct: 68  PAHCTLVVTLEPCNHHGKTPPCSHAIVKAGITRVVVGLADPNP-VASGGAEYLRAHGVTV 126

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  + E E    +  +LT ++    ++ LK+A + D  I      S  I+G  ++  VH 
Sbjct: 127 DMGVCEQECHDLVADFLTWKLTDLPYVILKLASTLDGRIATRSGHSQWISGEEARATVHE 186

Query: 186 LRAQS----DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           LRA+      A+LVG  T+  DDP+LT R+  L    PM ++   H         I    
Sbjct: 187 LRARIGEAGGAVLVGGTTLYTDDPQLTARVAPLPRRQPMAVVATRHLPHHDALPRIFRER 246

Query: 242 LAPVIIVTE--NDDPVLALAFRKKNINIIYCD-----CRDLKKLLTILV-GRGVTSLLVE 293
               +I T+        A   R   + ++          DL+  L  L    GV  +L E
Sbjct: 247 PGQCVIWTDAIGAGTEAADTLRTSGVCVMALPLTPAGRLDLRAGLVRLRDDHGVEHVLCE 306

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF-MCVRRDYFGSDVCL 352
           GG  +A S + + LV    L+ +  +IG+    +PL +G    +    +R    G    +
Sbjct: 307 GGGKLALSLLEAGLVGEFHLHMAPKIIGDAEA-APLFDGRAPLHMDEALRLRMTG----I 361

Query: 353 EYIGKN 358
           E  G +
Sbjct: 362 ERRGDD 367


>gi|332519663|ref|ZP_08396127.1| riboflavin biosynthesis protein RibD [Lacinutrix algicola 5H-3-7-4]
 gi|332044222|gb|EGI80416.1| riboflavin biosynthesis protein RibD [Lacinutrix algicola 5H-3-7-4]
          Length = 321

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 105/350 (30%), Positives = 160/350 (45%), Gaps = 39/350 (11%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--AR 68
           M  A++ +   +G T  NP V  +IV + I+IG G T+  G  HAEV A+     +   +
Sbjct: 1   MQRAIQIANNGLGTTRPNPMVGAVIVHNNIIIGEGFTSAYGGNHAEVNAINAVKNKDLLK 60

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
            +T YVTLEPCSHYG++PPC+  II   I  VV+   D +  V+G+G++ L      +  
Sbjct: 61  KSTLYVTLEPCSHYGKTPPCSDLIIHHNIPNVVIGCVDDNPEVAGKGIKKLMGANCKVTL 120

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC---GSVPITGFISKNQVH 184
            ++E++ K     + T   +KR +I LK A + +  I          V IT  IS+  VH
Sbjct: 121 GILENKCKEHHKRFFTFHNKKRPYIILKWAETSNGYIAPKTRTEQKPVWITNKISRQLVH 180

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
             RAQ  AILVG  TV+ D+P L  R      ++P RI+LD +  LS +  I        
Sbjct: 181 KWRAQEQAILVGTTTVIKDNPTLNVR--DWSGNNPTRIVLDKNNLLSKEYTIFNNEAETF 238

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
            I     +                        ++ + L  + + S+++EGGA     FIN
Sbjct: 239 TIKAQTAN------------------------EICSFLFKQTINSVIIEGGAKTLQLFIN 274

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
             L D   +++  I     GI +P   G L+        +   +D  L Y
Sbjct: 275 ENLWDEARVFKGNITF-TDGIKAPNFSGELKA------EETILNDTLLTY 317


>gi|323699086|ref|ZP_08110998.1| riboflavin biosynthesis protein RibD [Desulfovibrio sp. ND132]
 gi|323459018|gb|EGB14883.1| riboflavin biosynthesis protein RibD [Desulfovibrio desulfuricans
           ND132]
          Length = 364

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 98/365 (26%), Positives = 158/365 (43%), Gaps = 19/365 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
           M+ A+  +    G T+ NP V  ++V+DG+++  G     G  HAE + L +A   G + 
Sbjct: 1   MARAVELAGRGRGATAPNPCVGAVLVRDGVIVAEGWHTRFGRLHAERECLADARRKGVDP 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           RGA  YVTLEPC+H+G++PPC + +IE G+  V V   DP+  V+  G++ L   GI V 
Sbjct: 61  RGAAMYVTLEPCNHHGKTPPCTEALIEAGVAEVFVGTRDPNP-VAAGGVEKLRAHGIEVT 119

Query: 128 RMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +  +    L   +L  Q     +  +K+A + D  I  A     P++   S  +VH L
Sbjct: 120 VGVLEQPCRDLIADFLLWQNTHSCYNIVKMAATLDGKIAAAARRPEPVSCPESLARVHDL 179

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKTALLAP 244
           RA + A++VG  T  AD+P LTCR   L      P  +I+            +       
Sbjct: 180 RALAGAVIVGGNTFYADNPSLTCRKKDLPPDFVQPFGVIVTSRLPDDPSRFTLLRERPER 239

Query: 245 VIIVTENDDPVLALA--FRKKNINIIYCDCRDLKKLLTILVGR-----GVTSLLVEGGAA 297
            I +T         A   R++  ++     R    +L     R     G    L EGG  
Sbjct: 240 AIFMTSKTAAHSPQADVLRRRGTSVWPMPGRAGSLVLACGFERLRYDCGCHYTLCEGGGR 299

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYFGSDVCL 352
            A + I   L D ++ + +  ++G+   PS              +F     +  G+D+ L
Sbjct: 300 FALALIEQGLADELVHFVAPRILGDDAAPSAYSGRDNVPMAEALDFRIADFEPVGTDIML 359

Query: 353 EYIGK 357
               +
Sbjct: 360 TLRRR 364


>gi|108799353|ref|YP_639550.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. MCS]
 gi|119868469|ref|YP_938421.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. KMS]
 gi|126435011|ref|YP_001070702.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. JLS]
 gi|108769772|gb|ABG08494.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. MCS]
 gi|119694558|gb|ABL91631.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. KMS]
 gi|126234811|gb|ABN98211.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. JLS]
          Length = 333

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 110/357 (30%), Positives = 166/357 (46%), Gaps = 36/357 (10%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
              M+ A+  +    G T  NP V  +I+  DG V G G T   G PHAEV AL  AG +
Sbjct: 4   EAAMALAVEQADRVKGGTYPNPPVGAVILDADGEVAGVGATQPPGGPHAEVMALRRAGRK 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A G TA VTLEPC+H+GR+PPC   ++   +  VV  V DP+   +G   +       + 
Sbjct: 64  AAGGTAVVTLEPCNHHGRTPPCVDALLAAEVSAVVYAVPDPNPVAAGGAARLGESGVTVT 123

Query: 127 DRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
             ++        L  +L +Q   + H+T K A S D     A   S  IT   ++  VH 
Sbjct: 124 AGVLGDAVAGGVLREWLHKQRTGKPHVTWKFATSVDGRSAAADGSSQWITSEAARTDVHR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
            RA +DAI+VG GTVL DDP LT RL    L E  P+R+++    ++S DS+++      
Sbjct: 184 RRAVADAIVVGTGTVLVDDPVLTARLPDGSLAERQPLRVVVGKR-EISSDSRVLNDDSRT 242

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            VI                          RD +++L  L  R  T +++EGG  +A +F+
Sbjct: 243 MVI------------------------RTRDPQEVLRALSDR--TDVILEGGPTLAGAFL 276

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYIG 356
            +  +D I+ Y + I++G   + +  + G L     + +        G DV L  + 
Sbjct: 277 RAGAIDRIVAYVAPILLGGP-VTAVDDVGVLSIAHAQRWRFDGITPIGPDVLLSLVP 332


>gi|333028400|ref|ZP_08456464.1| putative riboflavin/cytosine deaminase [Streptomyces sp. Tu6071]
 gi|332748252|gb|EGJ78693.1| putative riboflavin/cytosine deaminase [Streptomyces sp. Tu6071]
          Length = 372

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 119/361 (32%), Positives = 175/361 (48%), Gaps = 14/361 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE 62
           ++ +   M  A+  +   +G T  NP V C+++   G V GRG     G PHAE+ AL  
Sbjct: 11  TAAETAAMREAIALAARGLGRTRPNPVVGCVVLDASGEVAGRGWHQRAGGPHAEIHALRA 70

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARG TA VTLEPC H GR+ PC++ +IE G+RRVV  V DP    +  G   L   
Sbjct: 71  AGERARGGTALVTLEPCDHTGRTGPCSRALIEAGVRRVVHAVADP-TDQATGGADTLRAA 129

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +   ++E E      A+LT     R H+T K A S D     A   S  IT   ++ 
Sbjct: 130 GVDVEHGLLEREAADVNAAWLTAARLGRPHVTWKYAASLDGRTAAADGTSRWITSPEARA 189

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTA 240
            VH LRA  DA+LVG GT   DDP L  R        P+R++LD     +   ++++  A
Sbjct: 190 DVHRLRATCDAVLVGSGTARTDDPHLAVR-GIPGAPQPLRVVLDTEGTAVRGGARVLDDA 248

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
             AP ++   +D P  A       +        DL  LL  L  R V  +L+EGGA +A 
Sbjct: 249 --APTLVALADDAPAPAHGAELLRLPRAARGGLDLTALLAALYARDVRGVLLEGGARLAG 306

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYI 355
           +F+ +   D ++ Y + +++G G  P+ L +  +      +R D       G D+ +  +
Sbjct: 307 AFVAAGYTDRVVGYLAPVLLGAG--PAALTDAGIPTLTAALRLDVRDSTRLGPDLRITAV 364

Query: 356 G 356
            
Sbjct: 365 P 365


>gi|298249165|ref|ZP_06972969.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM
           44963]
 gi|297547169|gb|EFH81036.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM
           44963]
          Length = 383

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 117/365 (32%), Positives = 179/365 (49%), Gaps = 20/365 (5%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
            FM  A+  +R   G TS  P V  ++V++  VIGRG T+    PHAE+ AL EA   A 
Sbjct: 5   EFMQKAIACARSIEGRTSPRPPVGAVLVRENQVIGRGATSPPYGPHAEIHALREAETTAA 64

Query: 69  -GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
            GA  Y TLEPC     +PPC   II  GI+RV++   DP+ +VSGRG+  L + GI ++
Sbjct: 65  VGADLYTTLEPCCITVHTPPCTAAIIAAGIKRVIIGSLDPNPQVSGRGVAQLREAGIEVI 124

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             + E E    +  + T   + R ++T K A++ D  +      +  I+G  ++  VH L
Sbjct: 125 TTIAEPETAALIRPFATYITQGRPYVTAKWAMTLDGKLASHTGDASWISGSAARTWVHQL 184

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSP-------MRIILDPHFKLSLDSKIIKT 239
           R + DAI++G+GT  ADDP LT RL   Q   P       +RI++    +L+   ++ + 
Sbjct: 185 RDRVDAIMIGVGTAHADDPRLTIRLTEEQRVHPRTQRPNHLRIVVSSRGELNAQLQLFQK 244

Query: 240 ALL-APVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVE 293
            L     +IV+E   P      R++ I +I          DL   L IL  R +  LL+E
Sbjct: 245 QLAPGTCVIVSETSAPDQRERLRERGIQVIEVPADQTGRVDLMAALHILGQREIMHLLLE 304

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGS 348
           GG+++  S    +L+D +  + +  +IG  G PSP+    L           V       
Sbjct: 305 GGSSLLGSAFEHKLIDHVAAFVAPKLIGGEGAPSPIGGAGLAIMQHAHRLQQVSFQTVAE 364

Query: 349 DVCLE 353
           D+ +E
Sbjct: 365 DLLIE 369


>gi|308180337|ref|YP_003924465.1| Pyrimidine reductase, riboflavin biosynthesis [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|308045828|gb|ADN98371.1| Pyrimidine reductase, riboflavin biosynthesis [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 355

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 108/353 (30%), Positives = 178/353 (50%), Gaps = 6/353 (1%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-GEEAR 68
           FM  A+  ++     T  NP V  ++VKDG V+ +G   Y G  HAEV  L +   E+AR
Sbjct: 5   FMQMAIDQAKLAGVATYQNPQVGAVLVKDGHVLAQGYHHYFGGDHAEVDVLRQVTPEQAR 64

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GAT +VTLEPCSHYG++PPC+  I+  GIR+VV+   DP   V G+G Q+L   G+ +V 
Sbjct: 65  GATLFVTLEPCSHYGKTPPCSARIVAAGIRQVVIGQLDPHPIVGGKGRQYLLNHGVDVVT 124

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
             +  + +     Y    V++R  ITLK A++ D  I         ++   S      LR
Sbjct: 125 GCLTDKVRALNPHYNHFYVQQRPWITLKTAITLDGKINTETPTRTLVSNHASYIDSQCLR 184

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           +Q  AIL+G  T+  DDP+LT RL  +    P+R+++     ++L+ ++++    AP  +
Sbjct: 185 SQFQAILIGERTLTIDDPQLTVRLTAM-VRPPVRLVVLNTSTVALNHRLVQDG-QAPTWL 242

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
           +               N++++         +  + V +G  SLLVEGGA +   F+ + L
Sbjct: 243 LCRQAAASDDQLRNSPNVHVL-IGNWTPAAISQLCVEQGWQSLLVEGGAHLQAEFVAAEL 301

Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYL-EKNFMCVRRDYFGSDVCLEYIGKNL 359
           +D  + Y + ++IG  G+P+      +    F        G+++ L  + K +
Sbjct: 302 IDEWVSYIAPMMIGGTGLPAVTGAAAMTPLTFEQPTVTCLGTNIRLRAVRKEV 354


>gi|254495519|ref|ZP_05108443.1| riboflavin biosynthesis protein RibD [Polaribacter sp. MED152]
 gi|85819875|gb|EAQ41032.1| riboflavin biosynthesis protein RibD [Polaribacter sp. MED152]
          Length = 337

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 101/347 (29%), Positives = 175/347 (50%), Gaps = 22/347 (6%)

Query: 16  RFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--ARGATAY 73
           + ++  +G+T  NPSV  +IV    +I  G T+  G  HAEV A+    ++   + AT Y
Sbjct: 2   QIAKNGIGVTRPNPSVGAVIVHQNKIIAEGFTSNYGGNHAEVNAIIAVKDKSLLKEATIY 61

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMES 132
           VTLEPCSHYG++PPCA  II+  +++VV+   D +  V+G+G++ + + GI +   ++E 
Sbjct: 62  VTLEPCSHYGKTPPCADLIIKHKLKKVVIGTLDTNSLVAGKGVERIEKAGIDVKVGVLEE 121

Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV---PITGFISKNQVHLLRAQ 189
           + K     + T Q +KR ++ LK A SQD  I            I+   S+  VH LR++
Sbjct: 122 KCKKHHKRFFTSQNKKRPYVILKWATSQDGFIAPLKKEVQKPIWISNQYSQQLVHKLRSK 181

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
             AILVG  T +AD+P+L  R      ++P+R++LD   ++  +  I   +     I +T
Sbjct: 182 EHAILVGTNTAIADNPKLNVR--SWSGNNPIRVVLDKSLRIENNLNIYDNS--VKTIFIT 237

Query: 250 ENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
           E     +     + NI     D +    +++L +L    + S+++EGG     +FI+  L
Sbjct: 238 E---KEVHNCGDESNIIFEKIDFKQKIAEQVLAVLQKHNIQSVIIEGGTQTLQTFIDENL 294

Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
            D   ++   + +   GI +P+  G +      + +    +D    Y
Sbjct: 295 WDEAFVFTGDVCL-NDGIKAPVFGGQI------IHQQEIKNDTLKIY 334


>gi|116334232|ref|YP_795759.1| pyrimidine reductase, riboflavin biosynthesis [Lactobacillus brevis
           ATCC 367]
 gi|116099579|gb|ABJ64728.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Lactobacillus brevis ATCC 367]
          Length = 356

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 109/363 (30%), Positives = 172/363 (47%), Gaps = 13/363 (3%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63
            +  FM  A+  +R   G T TNP V  + VK G ++  G     G  HAE+ AL +   
Sbjct: 2   LEQSFMQQAVIAARRGSGHTWTNPLVGAVFVKHGKILSVGYHHRYGQRHAEIDALAQLQR 61

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            ++A+GAT YVTLEPCSH+G++PPCA  +IE G+ RVV+   DP+  V+GRG+  L   G
Sbjct: 62  PQQAQGATLYVTLEPCSHFGKTPPCADRLIEVGVGRVVIGQRDPNPLVAGRGISKLRAAG 121

Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
           I V  +  +       AY       R  +T+K A+S D  +  A      +TG  +    
Sbjct: 122 IPVSVLDST--TALNPAYNFYYQHHRPQVTVKYAMSLDGKVNQAEAQRTYLTGAAAMADS 179

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR-IILDPHFKLSLDSKIIKTALL 242
             LR Q  AIL+G  T+  D P LT R     E  P+R ++L     +     + K    
Sbjct: 180 QQLRRQQQAILIGERTLTIDHPRLTIRDAITDEPVPIRMVVLHDIEHIDTSQPLFK--AP 237

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            P+ ++T +     A     + + +          +  +   +G+ +LLVEGG+ +  +F
Sbjct: 238 GPIWLLTTHP----ATCQLPEQVRVFTRTTWSPAAITALCYQQGIQALLVEGGSHLQAAF 293

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN--FMCVRRDYFGSDVCLEYIGKNLC 360
           +   L D +++Y S ++IG  G+P+     +      ++       G+DV L    +  C
Sbjct: 294 VRDDLADQLVIYLSPLLIGGAGLPAVYAPDWPSPKRAYIPPVTTLLGNDVKLTTRRQRKC 353

Query: 361 LQE 363
            QE
Sbjct: 354 SQE 356


>gi|46579612|ref|YP_010420.1| riboflavin biosynthesis protein RibD [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449027|gb|AAS95679.1| riboflavin biosynthesis protein RibD [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311233416|gb|ADP86270.1| riboflavin biosynthesis protein RibD [Desulfovibrio vulgaris RCH1]
          Length = 377

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 109/367 (29%), Positives = 169/367 (46%), Gaps = 25/367 (6%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
           FM  A+  +       + NP+V  ++V+DG V  RG     G PHAEV+ L +A   G +
Sbjct: 8   FMREAIALAERGRWYAAPNPTVGAVLVRDGEVAARGWHTGYGKPHAEVECLRDAASKGVD 67

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
               T  VTLEPC+H+G++PPC+  I+E GI RVVV + DP+  V+  G ++L   G+ V
Sbjct: 68  PAHCTLVVTLEPCNHHGKTPPCSHAIVEAGITRVVVGLADPNP-VASGGAEYLRAHGVTV 126

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           D  + E E    +  +LT ++    ++ LK+A + D  I      S  I+G  ++  VH 
Sbjct: 127 DMGVCEQECHDLVADFLTWKLTDLPYVILKLASTLDGRIATRSGHSQWISGAEARAAVHE 186

Query: 186 LRAQS----DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           LRA+      A+LVG  T+  DDP+LT R+  L    PM ++   H  +     + +   
Sbjct: 187 LRARIGEAGGAVLVGGTTLYTDDPQLTARVAPLPRRQPMAVVATRH--VPHHDALPRIFR 244

Query: 242 LAP----VIIVTENDDPVLALAFRKKNINIIYCD-----CRDLKKLLTIL-VGRGVTSLL 291
             P    V   +       A A R   + I+          DL+  LT L    GV  +L
Sbjct: 245 ERPGQCVVWTDSTGAGTEAADALRTSGVCIMALPLTPSGRLDLRAGLTRLRADHGVEHVL 304

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
            EGG  +A S + + LV    L+ +  +IG+       +          +R    G    
Sbjct: 305 CEGGGKLALSLLEAGLVGEFHLHMAPKIIGDAEAALLFDGRAPLHMDEALRLRMTG---- 360

Query: 352 LEYIGKN 358
           +E  G +
Sbjct: 361 IERRGDD 367


>gi|254556365|ref|YP_003062782.1| Pyrimidine reductase, riboflavin biosynthesis [Lactobacillus
           plantarum JDM1]
 gi|254045292|gb|ACT62085.1| Pyrimidine reductase, riboflavin biosynthesis [Lactobacillus
           plantarum JDM1]
          Length = 355

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 108/353 (30%), Positives = 179/353 (50%), Gaps = 6/353 (1%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-GEEAR 68
           FM  A+  ++     T  NP V  ++VKDG V+ +G   Y G  HAEV  L +   E+AR
Sbjct: 5   FMQMAIDQAKLAGVATYQNPQVGAVLVKDGHVLAQGYHHYFGGDHAEVDVLRQVTPEQAR 64

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GAT +VTLEPCSHYG++PPC+  I+  GIR+VV+   DP   V G+G Q+L   G+ +V 
Sbjct: 65  GATLFVTLEPCSHYGKTPPCSARIVAAGIRQVVIGQLDPHPIVGGKGRQYLLNHGVDVVT 124

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
             +  + +     Y    V++R  ITLK A++ D  I         ++   S      LR
Sbjct: 125 GCLTDKVRALNPHYNHFYVQQRPWITLKTAITLDGKINTETPTRTLVSNHASYIDSQCLR 184

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           +Q  AIL+G  T+  DDP+LT RL  + +  P+R+++     ++L+ ++++    AP  +
Sbjct: 185 SQFQAILIGERTLTIDDPQLTVRLTAMVQ-PPVRLVVLNTSTVALNHRLVQDG-QAPTWL 242

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
           +               N++++         +  + V +G  SLLVEGGA +   F+ + L
Sbjct: 243 LCRQAAASDDQLRNSPNVHVL-IGNWTPAAISQLCVEQGWQSLLVEGGAHLQAEFVAAEL 301

Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYL-EKNFMCVRRDYFGSDVCLEYIGKNL 359
           +D  + Y + ++IG  G+P+      +    F        G+++ L  + K +
Sbjct: 302 IDEWVSYIAPMMIGGTGLPAVTGAAAMTPLTFEQPTVTCLGTNIRLRAVRKEV 354


>gi|332703475|ref|ZP_08423563.1| riboflavin biosynthesis protein RibD [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553624|gb|EGJ50668.1| riboflavin biosynthesis protein RibD [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 380

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 108/368 (29%), Positives = 173/368 (47%), Gaps = 20/368 (5%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
           FM  AL  +    G T+ NP V  ++V+DG V+  G     G PHAE +A+ +A   G +
Sbjct: 7   FMRRALELAERCRGFTAPNPCVGAVLVRDGQVVAEGWHKIYGGPHAEREAIADARAKGVD 66

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
                 YVTLEPCSH+G++PPC + I+E GIRRV V   D +  V GRG ++L  KG+ +
Sbjct: 67  TSTCDMYVTLEPCSHHGKTPPCTEAILEAGIRRVFVGCKDLNPTVPGRGTEYLLSKGVQV 126

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E +  +  ++  + + R+  TLK+A++ D  IG        ++G  S  +V L
Sbjct: 127 ELGILEQECRDAIADFMLWKTQGRAWCTLKLAMTLDGRIGGPTGKPESVSGPESHRRVQL 186

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL---NGLQEHSPMRIILDPHFK-LSLDSKIIKTAL 241
           LRA+SDA+L+G GT+ ADDP LTCRL      Q   P+ I+       +S    +++   
Sbjct: 187 LRARSDAVLIGGGTLRADDPRLTCRLQPEGNAQVKRPLAIVATRKLTGISASFYLLRERP 246

Query: 242 LAPV-IIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTI-LVGRGVTSLLVEG 294
              +     E      A         +           DL   L   +   G   +L EG
Sbjct: 247 SELIFWTTDEAARSDTADRLGDMGCRVWGLPEHSAGGLDLAAGLERFMRDAGGHYVLCEG 306

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSD 349
           G  +A S       D + ++ +   +G+   P+      +E      ++  +R +  GSD
Sbjct: 307 GGHMAMSLALQSAADELKVFLAPRALGDERAPASFAGRSVESVAEAVDWRVLRAEPSGSD 366

Query: 350 VCLEYIGK 357
           + +    +
Sbjct: 367 LEITLRPQ 374


>gi|218662593|ref|ZP_03518523.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
           [Rhizobium etli IE4771]
          Length = 287

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 147/252 (58%), Positives = 186/252 (73%), Gaps = 1/252 (0%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M ++  D  FM+AA+R SR H+G T+TNPSV CLIVKDG+V+G+ VTA GG PHAE QAL
Sbjct: 1   MSITPHDESFMAAAIRLSRRHLGRTATNPSVGCLIVKDGVVVGQAVTALGGRPHAEPQAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAGE ARGATAYVTLEPCSH+G++PPCA+ +I  G+ RVV+ V DPD RVSGRG+  L 
Sbjct: 61  AEAGEAARGATAYVTLEPCSHHGKTPPCAEALIAHGVARVVISVTDPDPRVSGRGIAMLR 120

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI VD  ++E+EG+  L  YLTRQ + R ++TLK+AVS D MIG AG G V ITG  +
Sbjct: 121 EAGIEVDAGVLEAEGRRSLAGYLTRQTKSRPYVTLKLAVSADGMIGRAGEGQVAITGPEA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           + +V  LRA++DAILVGIGT ++DDP LT R  GL+  SP+RI+LDP   L L SK++ T
Sbjct: 181 RAEVQALRAETDAILVGIGTAISDDPLLTVRTPGLEAQSPIRIVLDPSLALPLTSKLVAT 240

Query: 240 ALLAPVIIVTEN 251
           A   PVI+V   
Sbjct: 241 ARDVPVILVASE 252


>gi|226366358|ref|YP_002784141.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Rhodococcus opacus B4]
 gi|226244848|dbj|BAH55196.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Rhodococcus opacus B4]
          Length = 354

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 115/363 (31%), Positives = 177/363 (48%), Gaps = 37/363 (10%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQAL 60
             +  DA  M  A+  +    G TS NP+V  +++   G + G G+T   G PHAEV AL
Sbjct: 10  SAADLDAA-MQIAIGAAESARGFTSPNPAVGAVVLDAAGRIAGVGMTQPPGGPHAEVVAL 68

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAG+ ARG TA VTLEPC+H+GR+ PC+Q +++ G+  V   V DP+   +G G + L 
Sbjct: 69  REAGDAARGGTAVVTLEPCNHHGRTGPCSQALLDAGVVAVHYAVGDPNPEAAG-GAEALV 127

Query: 121 QKGIIVDRMMESEGKI--FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
             G+ V   + ++      L A+L RQ   R H+T K A + D     A   S  ITG  
Sbjct: 128 SAGVEVTSGLRADDVERGPLRAWLHRQRTGRPHVTWKYAATLDGRSAAADGTSQWITGPE 187

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKI 236
           ++ +VH  RA+ DAI+VG GTVLADDP LT R     L  H P+R+++     +   +++
Sbjct: 188 ARERVHADRAKLDAIVVGTGTVLADDPRLTARTPDGSLAAHQPVRVVV-GLGDIPPGARV 246

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
           +  +  AP +                          RD+ ++L  L     T +L+EGG 
Sbjct: 247 LDDS--APTL----------------------RLRTRDVDEVLAALSEY--TDVLLEGGP 280

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLE 353
            +A +F+ +  VD I  Y + +++G G      + +        F     +  G D+ L 
Sbjct: 281 RLAGAFLAAGRVDRIQAYLAPLILGAGASAVSEAGVHTIGGALRFRHESVETIGPDLLLS 340

Query: 354 YIG 356
            + 
Sbjct: 341 LVP 343


>gi|120403674|ref|YP_953503.1| riboflavin biosynthesis protein RibD [Mycobacterium vanbaalenii
           PYR-1]
 gi|119956492|gb|ABM13497.1| riboflavin biosynthesis protein RibD [Mycobacterium vanbaalenii
           PYR-1]
          Length = 333

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 109/349 (31%), Positives = 163/349 (46%), Gaps = 34/349 (9%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M+AA+  S    G T  NP V  +I+ +DG + G G TA  G PHAEV AL  AGE A G
Sbjct: 7   MAAAIEQSERVKGRTYPNPPVGAVILDRDGEIAGVGATAPPGGPHAEVVALRRAGERAVG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            TA VTLEPC+H+GR+PPC   +++ GI  V   V DPD   +G   +       +   +
Sbjct: 67  GTAVVTLEPCNHFGRTPPCVDALLDAGIAEVAFAVADPDPVAAGGAARLAESGVRVSAGV 126

Query: 130 MESEGK-IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + ++     L  +L +Q     H+T K A S D     A   S  IT   ++  VH  RA
Sbjct: 127 LAADVTGGPLREWLHKQRTGMPHVTWKFATSVDGRSAAADGSSQWITSEAARADVHRRRA 186

Query: 189 QSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
            +DAI+VG GTV  DDP LT RL    L +H P+R+++    ++S D+ ++       VI
Sbjct: 187 TADAIIVGTGTVFVDDPALTARLPDGSLADHQPLRVVVGKR-EISPDATVLNDDSRTMVI 245

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
                                      +  +++  L  R  T + VEGG  +A +F+ + 
Sbjct: 246 ------------------------RTHNPHEVIKALADR--TDVFVEGGPTLAGAFLRAG 279

Query: 307 LVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCL 352
           ++D I+ Y + I++G          +      + +        G DV L
Sbjct: 280 VIDRILAYVAPILLGGPITAVDDVGVLSIAQAQRWRFDGMTAVGPDVLL 328


>gi|206602767|gb|EDZ39248.1| Riboflavin biosynthesis protein RibD [Leptospirillum sp. Group II
           '5-way CG']
          Length = 388

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 131/363 (36%), Positives = 185/363 (50%), Gaps = 17/363 (4%)

Query: 7   DAR-FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D + FM+ AL  +       + NP V  ++V+ G V+GRG     G PHAEV AL EAGE
Sbjct: 4   DEKVFMAMALDLAMMARDDVAPNPRVGAVVVRKGRVVGRGYHERPGLPHAEVLALREAGE 63

Query: 66  EARGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            ARGAT YV LEPC H   R+PPC + I+  GI RVV+ + DP+  V+G+G+  L   GI
Sbjct: 64  RARGATLYVNLEPCCHLNKRTPPCTREILSSGIGRVVISLSDPNPHVNGKGILELRDGGI 123

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++  +       +L+     R  +TLK A S D  I  A   S  I+G  S    
Sbjct: 124 PVETGLLAPQAFAVNRGFLSLMKNGRPFVTLKGAASLDGQIATATGDSQWISGAPSLKYA 183

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALL 242
           H LR + DAI+VG+GTVL D+P LT RL GL++ H P+RIILD   +   DS++ +T   
Sbjct: 184 HQLRQEHDAIVVGVGTVLKDNPLLTTRLPGLRKVHHPVRIILDSLGRTPPDSRLFETLSE 243

Query: 243 APVIIVTENDDPV-LALAFRKKNINIIYCDCRDLKK------LLTILVGRGVTSLLVEGG 295
           +PV I+   + P        +K            +K      LL  L+   + +LLVEGG
Sbjct: 244 SPVWIMAGENAPEDRIARLEEKGARTFRLPAGPGEKGLRLSSLLAELLENRLLTLLVEGG 303

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM------CVRRDYFGSD 349
           A V  SF+  RLVDSI L  + ++IG       +     ++          +R    G D
Sbjct: 304 AQVNGSFLQERLVDSIRLVLAPLLIGGEDALGWIGGRSPKRLVDAFRFPGPLRTRRLGED 363

Query: 350 VCL 352
           + +
Sbjct: 364 LLI 366


>gi|168008266|ref|XP_001756828.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692066|gb|EDQ78425.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 550

 Score =  268 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 94/369 (25%), Positives = 167/369 (45%), Gaps = 19/369 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+  M  A+  +    GLT+ +P   C+I +   ++G G     G   AEVQA+EEA E+
Sbjct: 1   DSAHMLKAVELAESSNGLTAPHPKFGCVIARGRRIVGGGGLYGQGARSAEVQAVEEAREQ 60

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATA+++LEP    G     A  +++ G+ RVVV +  P     G+ +  L + G+ V
Sbjct: 61  ARGATAFLSLEPGDCGGDDAAIA-ALVQGGLGRVVVGMRHPLAHFRGKAIAALRRAGVRV 119

Query: 127 DRMME------------SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           +   E               +      L R        TLK A++ D  I  +   S  +
Sbjct: 120 EVGGEDFGGGGAIEAALKACQSANAPLLYRVSHNLPMSTLKYAMTLDGKIAASSGHSAWV 179

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           +  +S+++V   RAQSDA++VG  TV  D+P LT RL G   H P RI++     L  D+
Sbjct: 180 SSAVSRHRVMKTRAQSDAVIVGGNTVRIDNPNLTTRLEG--GHQPDRIVMSRALDLPRDA 237

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
            +   +    +++  +  +         + + ++  D    + ++     RG  S+L E 
Sbjct: 238 NLWDVSKANTIVMTQKGSNLEFQKLLTSRGVEVVEFDFLSPRAVMEHCYMRGYLSVLWEC 297

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           G  ++   I   +V  ++ + +  ++G     +P+ E  + +    ++     SDV  E 
Sbjct: 298 GGMLSAPAIQDGVVHKVLAFIAPKIVGGLRAATPVGELGMVQMTQALKL----SDVAFEQ 353

Query: 355 IGKNLCLQE 363
            G ++ +  
Sbjct: 354 TGPDMLVTG 362


>gi|331012488|gb|EGH92544.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 249

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 101/245 (41%), Positives = 140/245 (57%), Gaps = 11/245 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            ++ D  +M+ AL  +R  +  T  NP V C+IV+DG ++G G     G PHAEV AL +
Sbjct: 5   QAALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQ 64

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH GR+PPCA  ++  G+ RVV  + DP+  VSGRGL  L   
Sbjct: 65  AGELARGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPEVSGRGLLRLMNA 124

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++ESE +     +L R    + +I +K+A+S D    MA   S  ITG  +++
Sbjct: 125 GIGVQCGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARS 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRAQS  +L G  TVLAD   LT R + L              P+R+++D   ++ 
Sbjct: 185 AVQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLRVP 244

Query: 232 LDSKI 236
           LD+  
Sbjct: 245 LDAPF 249


>gi|282859870|ref|ZP_06268958.1| riboflavin biosynthesis protein RibD [Prevotella bivia JCVIHMP010]
 gi|282587273|gb|EFB92490.1| riboflavin biosynthesis protein RibD [Prevotella bivia JCVIHMP010]
          Length = 314

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 107/360 (29%), Positives = 166/360 (46%), Gaps = 55/360 (15%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQA 59
           M     D  +M   L+ +     L   NP V  +IV + G +IG G     G  HAEV A
Sbjct: 1   MERQDIDEMYMRRCLQLATNGKLLAKPNPMVGAVIVSNEGRIIGEGYHVRCGEEHAEVNA 60

Query: 60  LEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
                +E       +T YV+LEPCSH+G++PPCA  II+ G++RVV    DP  +V GRG
Sbjct: 61  FASVRKEDESLLSDSTIYVSLEPCSHFGKTPPCANLIIKKGVKRVVCGCVDPFSKVQGRG 120

Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           +Q + + GI +   ++E+E  +  + ++T   ++R +I LK A +++  +G+   G + I
Sbjct: 121 IQRIREAGIEVTVGVLEAECLVLNNRFITFNTQERPYIILKWAQTENGFMGVK-GGVLKI 179

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           +   +K  VH LR++ DAILVG  T   + P+L  R       +P +++L          
Sbjct: 180 STPFTKMLVHKLRSECDAILVGRNTEEQESPQLNVR--DWSGRNPQKVVLSSTL------ 231

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
                    P  I                          D+  LL  L      +L+VEG
Sbjct: 232 ---------PTAI-------------------------HDIPSLLQQLYHDKCQTLIVEG 257

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           GA    +FI S + D I +  S   +   GI +P     L K+   +R++YFG +V   Y
Sbjct: 258 GATTLETFIRSGMYDEIRVEVSPTTV-REGIKAP----QLPKDVSVIRKEYFG-NVITTY 311


>gi|330899666|gb|EGH31085.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 301

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 107/291 (36%), Positives = 156/291 (53%), Gaps = 17/291 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            ++ D  +M+ AL  +R  +  T  NP V C+IV++G ++G G  A  G PHAEV AL +
Sbjct: 5   QAALDVHYMARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQ 64

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH GR+PPCA  +IE G+  VV  + DP+  VSGRGL  L   
Sbjct: 65  AGELARGATAYVTLEPCSHQGRTPPCADALIEAGLTGVVAAMQDPNPEVSGRGLLRLMNA 124

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++ESE +     +L R      ++ +K+A+S D    MA   S  ITG  +++
Sbjct: 125 GIGVQCGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARS 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231
            V  LRAQS  +L G  TVLAD   LT R + L             +P+R+++D   ++ 
Sbjct: 185 AVQRLRAQSSVVLSGADTVLADKARLTVRADELGLDAELTALAAARAPLRVLIDGRLRVP 244

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLL 279
           LD+   +       ++VT            + +  +   D     DL++L+
Sbjct: 245 LDAPFFQAGSA---LVVTCAAASARGRYQEEGHEMLALADSAGHVDLRRLM 292


>gi|124514350|gb|EAY55863.1| riboflavin biosynthesis protein RibD [Leptospirillum rubarum]
          Length = 388

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 129/363 (35%), Positives = 183/363 (50%), Gaps = 17/363 (4%)

Query: 7   DAR-FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D + FM+ AL  +       + NP V  ++V+ G V+GRG     G PHAEV AL EAGE
Sbjct: 4   DEKVFMAMALDLAMMARDDVAPNPRVGAVVVRKGRVVGRGYHERPGLPHAEVLALREAGE 63

Query: 66  EARGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            ARGAT YV LEPC H   R+PPC + I+  GI RVV+ + DP+  V+G+G+  L + G+
Sbjct: 64  RARGATLYVNLEPCCHLNKRTPPCTREILSSGIGRVVISLSDPNPHVNGKGILELREGGV 123

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +   ++  +       +L+     R  +TLK A S D  I  A   S  I+G  S    
Sbjct: 124 SVETGLLAPQAFAVNRGFLSLMKNGRPFVTLKGAASLDGQIATATGDSQWISGAPSLKYA 183

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALL 242
           H LR + DAI+VG+GTVL D+P LT RL GL++ H P+R+ILD   +   DS++ +T   
Sbjct: 184 HQLRQEHDAIVVGVGTVLKDNPLLTTRLPGLRKVHHPVRVILDSLGRTPPDSRLFETISE 243

Query: 243 APVIIVTENDDPV-LALAFRKKNINIIYCD------CRDLKKLLTILVGRGVTSLLVEGG 295
           +PV I+     P         K                 L  LL  L+   + +LLVEGG
Sbjct: 244 SPVWIMAGEHAPEDRVARLEDKGARTFRLPAGSDGKGLRLSSLLAALLESRLLTLLVEGG 303

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM------CVRRDYFGSD 349
           A V  SF+  RLVDSI L  + ++IG       +     ++          +R    G D
Sbjct: 304 AQVNGSFLQERLVDSIRLVLAPLLIGGEDALGWIGGRSPKRLVDAFRFPGPLRTRRLGED 363

Query: 350 VCL 352
           + +
Sbjct: 364 LLI 366


>gi|260593448|ref|ZP_05858906.1| riboflavin biosynthesis protein RibD [Prevotella veroralis F0319]
 gi|260534564|gb|EEX17181.1| riboflavin biosynthesis protein RibD [Prevotella veroralis F0319]
          Length = 331

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 101/369 (27%), Positives = 154/369 (41%), Gaps = 55/369 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
           M  +  D ++M   L+ +   +     NP V  +IV K+G +IG G     G  HAEV A
Sbjct: 6   MKQADIDEKYMRRCLQLAYNGMLKAKPNPMVGAVIVSKEGRIIGEGYHVQCGKGHAEVNA 65

Query: 60  LEEAGE----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
                E        AT YV+LEPCSHYG++PPCA  II  G+ RVV    DP   V GRG
Sbjct: 66  FASVKEVDSHLLHDATLYVSLEPCSHYGKTPPCADLIIRKGVHRVVCGCIDPFAEVHGRG 125

Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ-----DNMIGMAGC 169
           +Q L   GI +   ++E E       ++T     R ++ LK A +         +     
Sbjct: 126 VQKLRDAGIEVTVGVLEKECLELNKRFITYNTHHRPYVILKWAQTMGNPAYIGYLPSKDY 185

Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229
             + I+   +K  VH LRA++DAILVG  T   + P+LT R       +P +I+L     
Sbjct: 186 HPLNISTPFTKMLVHKLRAENDAILVGRTTNDLEHPQLTVR--EWSGKNPEKIVLSQQKS 243

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
            S                                            + +L  L      S
Sbjct: 244 TS-------------------------------------SAQYPSPQSVLDHLYQEKKQS 266

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           L+VEGGA+   SF+++ L D I +    +++ + G+ +P     +  N    R + +  +
Sbjct: 267 LIVEGGASTLQSFLDAGLWDEIRVETGSLLV-DKGVKAP----QMPSNIHITRIEQWDDN 321

Query: 350 VCLEYIGKN 358
             + Y  + 
Sbjct: 322 KIVTYQREE 330


>gi|291006182|ref|ZP_06564155.1| riboflavin-specific deaminase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 385

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 113/369 (30%), Positives = 174/369 (47%), Gaps = 12/369 (3%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62
           +  +   M  A+R +      TS NP V C+++  DG   G G     G PHAEV+AL  
Sbjct: 15  TEAERWAMRRAIRLTADPPRRTSPNPYVGCVVLDADGRFAGEGHHRGAGHPHAEVEALAA 74

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  A G TA VTLEPC+H GR+ PC + +   G+ RVV  V+DP  R +  G + L+  
Sbjct: 75  AGGRAAGGTAVVTLEPCAHRGRTGPCTEALSAAGVSRVVFAVEDP-TRDASGGAERLAAG 133

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +V  +   E +     +LT    +R  +T K A + D     A   S  IT   ++ 
Sbjct: 134 GVEVVGGLHREEAERHNEFWLTSVRRERPFVTWKFAGTIDGRSAAADGSSRWITAAQARR 193

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
             H LRA  DA+LVG GT+ AD+P L  R +G+    P+R++LD   ++   ++++  + 
Sbjct: 194 DAHALRAVHDAVLVGGGTLRADNPHLGLR-HGVVGEPPLRVVLDSAGRIKPGARVLDGSA 252

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
              V++     +P    A           D  DL  L   L  RGV S+L+EGGA +A  
Sbjct: 253 PTLVVVSDRAGEPRGLGAAAGTLAVPSTEDGLDLAALSERLFARGVRSVLLEGGARLAAG 312

Query: 302 FINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           F+   LVD ++ Y + + +G  G+P      +                 G D+ +    +
Sbjct: 313 FLAGGLVDRVVAYLAPMFLGGAGLPVVTDIGVASMAEAARMRVEEVRQLGPDLRVVMQPE 372

Query: 358 ----NLCLQ 362
               + CL+
Sbjct: 373 PRDLDACLR 381


>gi|300767117|ref|ZP_07077029.1| riboflavin biosynthesis protein RibD [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|300494936|gb|EFK30092.1| riboflavin biosynthesis protein RibD [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
          Length = 355

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 107/353 (30%), Positives = 178/353 (50%), Gaps = 6/353 (1%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-GEEAR 68
           FM  A+  ++     T  NP V  ++VKDG V+ +G   Y G  HAEV  L +   E+AR
Sbjct: 5   FMQMAIDQAKLAGVATYQNPQVGAVLVKDGHVLAQGYHHYFGGDHAEVDVLRQVTPEQAR 64

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           GAT +VTLEPCSHYG++PPC+  I+  GIR+VV+   DP   V G+G Q+L   G+ +V 
Sbjct: 65  GATLFVTLEPCSHYGKTPPCSARIVAAGIRQVVIGQLDPHPIVGGKGRQYLLNHGVDVVT 124

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
             +  + +     Y    V++R  ITLK A++ D  I         ++   S      LR
Sbjct: 125 GCLTDKVRALNPHYNHFYVQQRPWITLKTAITLDGKINTETPTRTLVSNHASYIDSQCLR 184

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           +Q  AIL+G  T+  DDP+L  RL  + +  P+R+++     ++L+ ++++    AP  +
Sbjct: 185 SQFQAILIGERTLTIDDPQLAVRLTAMVQ-PPVRLVVLNTSTVALNHRLVQDG-QAPTWL 242

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
           +               N++++         +  + V +G  SLLVEGGA +   F+ + L
Sbjct: 243 LCRQAAASDDQLRNSPNVHVL-IGNWTPAAISQLCVEQGWQSLLVEGGAHLQAEFVAAEL 301

Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYL-EKNFMCVRRDYFGSDVCLEYIGKNL 359
           +D  + Y + ++IG  G+P+      +    F        G+++ L  + K +
Sbjct: 302 IDEWVSYIAPMMIGGTGLPAVTGAAAMTPLTFEQPTVTCLGTNIRLRAVRKEV 354


>gi|111024118|ref|YP_707090.1| riboflavin biosynthesis protein RibD [Rhodococcus jostii RHA1]
 gi|110823648|gb|ABG98932.1| riboflavin biosynthesis protein RibD [Rhodococcus jostii RHA1]
          Length = 350

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 115/363 (31%), Positives = 180/363 (49%), Gaps = 37/363 (10%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQAL 60
             +  DA  M  A+  +    G TS NP+V  +++   G + G G+T   G PHAEV AL
Sbjct: 6   SAADLDAA-MQIAIGAAESARGFTSPNPAVGAVVLDAAGRIAGVGMTQPPGGPHAEVVAL 64

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAG+ ARG TA VTLEPC+H+GR+ PC+Q +++ G+  V   V DP+   +G G + L 
Sbjct: 65  REAGDAARGGTAVVTLEPCNHHGRTGPCSQALLDAGVVAVHYAVGDPNPEAAG-GAETLI 123

Query: 121 QKGIIVDRMMESEGKI--FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
             G+ V   + ++      L A+L RQ   R H+T K A + D     A   S  ITG  
Sbjct: 124 SAGVEVTSGLRAQDVERGPLRAWLHRQRTGRPHVTWKYAATLDGRSAAADGTSQWITGPE 183

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKI 236
           ++ +VH  RA+ DAI+VG GTVLADDP LT R+    L  H P+R+++     +  D+++
Sbjct: 184 ARERVHADRAKLDAIVVGTGTVLADDPRLTARMPDGSLAAHQPVRVVV-GLGDIPADARV 242

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
           +  +  AP ++                          D+ ++L  L     T +L+EGG 
Sbjct: 243 LDDS--APTLL----------------------LRTHDVDEVLAALAEY--TDVLLEGGP 276

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
            +A +F+ +  VD I  Y + +++G G      + +        F     +  GS++ L 
Sbjct: 277 RLAGAFLAAGRVDRIQAYLAPLILGAGTSAVAEAGVHTIDGALRFRHESVETIGSELLLS 336

Query: 354 YIG 356
            + 
Sbjct: 337 LVP 339


>gi|312131512|ref|YP_003998852.1| riboflavin biosynthesis protein ribd [Leadbetterella byssophila DSM
           17132]
 gi|311908058|gb|ADQ18499.1| riboflavin biosynthesis protein RibD [Leadbetterella byssophila DSM
           17132]
          Length = 322

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 106/341 (31%), Positives = 167/341 (48%), Gaps = 35/341 (10%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--A 67
           +M  AL  +       S NP V C+IV +  +IG G     G PHAEV A++   ++   
Sbjct: 3   YMKRALELAALGREWVSPNPMVGCVIVHNDKIIGEGFHRKYGQPHAEVNAVDSVEDKSLL 62

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
             +T YVTLEPC+H+G++PPCA+ +I+  +++VVVC  DP  +V+G+G+  L   GI + 
Sbjct: 63  SESTVYVTLEPCAHFGKTPPCAELLIKHKVKKVVVCNLDPFPQVAGKGITMLKNAGIDVE 122

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +++ EG+     +  R      ++ LK A S+D  I   G   + I+  I+  QVH  
Sbjct: 123 VGLLQEEGEELNKRFFKRHRTGLPYVILKWAESKDGFISAEGGKPIKISHPITDIQVHRW 182

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA+ DAIL+G  T   D+P+L  R    ++  P  IIL    +  L +K  K        
Sbjct: 183 RAEEDAILIGKNTADLDNPQLNVRYW-TEDKQPKPIILGQPTRQDLRAKGAK-------- 233

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
                                I+ + ++L ++L  L   G+ S+LVEGG  +  SFI   
Sbjct: 234 ---------------------IFPNGKNLTEILRQLAQDGIQSILVEGGTKIHTSFIEEG 272

Query: 307 LVDSIILYRSQIVIGEGGIPSP-LEEGYLEKNFMCVRRDYF 346
           L D I + +  I I   G+ +P L +G +  +    R D+ 
Sbjct: 273 LFDEIRVIQGDIEI-LNGVKAPQLPDGLILTDHHTYRNDHI 312


>gi|134099429|ref|YP_001105090.1| riboflavin-specific deaminase [Saccharopolyspora erythraea NRRL
           2338]
 gi|133912052|emb|CAM02165.1| riboflavin-specific deaminase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 364

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 113/362 (31%), Positives = 172/362 (47%), Gaps = 12/362 (3%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  A+R +      TS NP V C+++  DG   G G     G PHAEV+AL  AG  A G
Sbjct: 1   MRRAIRLTADPPRRTSPNPYVGCVVLDADGRFAGEGHHRGAGHPHAEVEALAAAGGRAAG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
            TA VTLEPC+H GR+ PC + +   G+ RVV  V+DP  R +  G + L+  G+ +V  
Sbjct: 61  GTAVVTLEPCAHRGRTGPCTEALSAAGVSRVVFAVEDP-TRDASGGAERLAAGGVEVVGG 119

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +   E +     +LT    +R  +T K A + D     A   S  IT   ++   H LRA
Sbjct: 120 LHREEAERHNEFWLTSVRRERPFVTWKFAGTIDGRSAAADGSSRWITAAQARRDAHALRA 179

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
             DA+LVG GT+ AD+P L  R +G+    P+R++LD   ++   ++++  +    V++ 
Sbjct: 180 VHDAVLVGGGTLRADNPHLGLR-HGVVGEPPLRVVLDSAGRIKPGARVLDGSAPTLVVVS 238

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
               +P    A           D  DL  L   L  RGV S+L+EGGA +A  F+   LV
Sbjct: 239 DRAGEPRGLGAAAGTLAVPSTEDGLDLAALSERLFARGVRSVLLEGGARLAAGFLAGGLV 298

Query: 309 DSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK----NLC 360
           D ++ Y + + +G  G+P      +                 G D+ +    +    + C
Sbjct: 299 DRVVAYLAPMFLGGAGLPVVTDIGVASMAEAARMRVEEVRQLGPDLRVVMQPEPRDLDAC 358

Query: 361 LQ 362
           L+
Sbjct: 359 LR 360


>gi|225454196|ref|XP_002273879.1| PREDICTED: similar to cytidine/deoxycytidylate deaminase family
           protein [Vitis vinifera]
          Length = 379

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 99/365 (27%), Positives = 161/365 (44%), Gaps = 24/365 (6%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D  +M   +  +R  +G TS NP V C+IVKDG V+G G     G PH EV AL +AG
Sbjct: 26  EDDGFYMRRCVELARKAIGCTSPNPMVGCVIVKDGKVVGEGFHPKAGQPHGEVFALRDAG 85

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           + A  ATAYV+LEPC+HYGR+PPC + +I+  +++VV+ + DP+  V+ +G+  L   GI
Sbjct: 86  DLAENATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVIGMVDPNPIVASKGVDRLRDAGI 145

Query: 125 IVDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V   +E E  K    AY+ + +  +  +TL+ ++S +  I       V   G      V
Sbjct: 146 EVTVAVEEELCKKLNEAYIHQMLTGKPFVTLRYSLSINGHILDQLGEGVEEAGGYYSQLV 205

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
                + DAI++   TV         +  G     P+ I++           I  T   +
Sbjct: 206 Q----EYDAIILSPTTVTEKFSFPASQEPGAN--QPLHILIAKSPISPNQIPIPHTEATS 259

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF- 302
            VII  +N+  V      +K I  +  D  +L  +L     +G+ S+L++    +  +F 
Sbjct: 260 KVIIFADNETAVEPEMV-QKGIETVVLDQINLNAVLEYCKRQGLCSILLD----LRGNFG 314

Query: 303 ---------INSRLVDSIILYRSQIV--IGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
                    +   L+  +++          E G+P  L+          +        V 
Sbjct: 315 YFEDLLKQSLEENLLQKVVVEVLPFWSTNEEEGLPLALKNLRKGIRLKNITSRNSNDSVV 374

Query: 352 LEYIG 356
           LE   
Sbjct: 375 LEGYP 379


>gi|222151702|ref|YP_002560858.1| hypothetical protein MCCL_1455 [Macrococcus caseolyticus JCSC5402]
 gi|222120827|dbj|BAH18162.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 341

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 98/351 (27%), Positives = 164/351 (46%), Gaps = 18/351 (5%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           +++ A    +W  G T  NP+V C+IVKD  ++G G     G  HAEV A+  AG  A+G
Sbjct: 2   YINKAFELVKWTEGQTGMNPAVGCVIVKDDRIVGIGAHLTEGEAHAEVNAIHMAGSHAQG 61

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           AT Y TLEPCSH+G++PPC + I+  GI +VV    D        G++++  + I V+++
Sbjct: 62  ATLYCTLEPCSHHGKTPPCTEKIVAAGISKVVYAASD---VTLSSGVKYMRSESIEVEKV 118

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
                  F   + T +     ++T+K+A + D         S  IT   S+   H +R +
Sbjct: 119 ECRAIDDFYAPFFTSKTSSLPYVTIKMATTVDGKTADDESISKWITNEKSRAHAHEVRYR 178

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DAI+VG  T   D P L  RL   ++    ++I+  +    L+++       + +IIV+
Sbjct: 179 MDAIMVGYNTYKKDIPTLDARL--YKDKRIKKVIV-TNGPFVLNTQDDNDYDRSRLIIVS 235

Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
                  A+    + + +I+      + +L  L    + +LL+EGG     +FI ++  +
Sbjct: 236 -------AIEQHIEGVTVIHVPHLSPEHILKALYNERIRNLLIEGGMQTIRTFIEAKYYN 288

Query: 310 SIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355
            I  Y +  ++G       L    L       +F  V  + F  DV L Y 
Sbjct: 289 EIHHYIAPKLLGGTSKHQFLTTDTLSSMRDMTHFNLVSVNQFDDDVLLIYR 339


>gi|332187003|ref|ZP_08388744.1| riboflavin biosynthesis protein RibD [Sphingomonas sp. S17]
 gi|332013013|gb|EGI55077.1| riboflavin biosynthesis protein RibD [Sphingomonas sp. S17]
          Length = 313

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 125/352 (35%), Positives = 168/352 (47%), Gaps = 46/352 (13%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M AAL  +   +G T+ NP+V C++V+DG VIGRG T  GG PHAE  AL EAGE A GA
Sbjct: 1   MGAALALAGRGIGRTAPNPNVGCILVRDGRVIGRGWTQPGGRPHAEAMALAEAGESACGA 60

Query: 71  TAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           TAYVTLEPC+H   R P C   +I  G+  +V  + DPD R +G+G       GI +   
Sbjct: 61  TAYVTLEPCAHVSTRGPACTDLLIAAGVAHIVAAMGDPDPRTNGQGFDRARAAGIAVTTG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + ESE +  +  +LTR+ ++R  +TLK+A S D  I      S  ITG  ++   HL R+
Sbjct: 121 ICESEARAMIAGFLTRRAKERPFVTLKLATSLDGRIARPDGTSRWITGPQARAHTHLERS 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + +AILVG GT+ AD P L  RL GL+  SP RI+L                        
Sbjct: 181 RHEAILVGRGTLQADSPRLDVRLPGLETRSPRRILLSRT--------------------- 219

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
               +P          I  +                 GV  L+VEGGA  A +F+ + LV
Sbjct: 220 ---SEPGWETISSPHAITHLA----------------GVDRLMVEGGAQTASAFLAADLV 260

Query: 309 DSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
           D ++LYR+ I+IGEG                  +        G D    Y  
Sbjct: 261 DRLLLYRAPILIGEGRAALGDIGLAALADAHGRWRLRDSRMLGIDRMEVYER 312


>gi|195640478|gb|ACG39707.1| riboflavin biosynthesis protein ribD [Zea mays]
          Length = 392

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 103/357 (28%), Positives = 165/357 (46%), Gaps = 23/357 (6%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            DA +M   +  +R   G TS NP V C+IV+DG V+G G     G PHAEV AL +AG 
Sbjct: 47  DDAHYMRRCVELARKAAGHTSPNPMVGCVIVRDGRVVGEGFHPKAGQPHAEVFALRDAGN 106

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            A  ATAYV+LEPC+HYGR+PPC + +I   ++ VVV + DP+  V+ +G++ L   GI 
Sbjct: 107 LAENATAYVSLEPCNHYGRTPPCTEALINAKVKEVVVGMTDPNPIVASKGIEKLQGAGIS 166

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI-GMAGCGSVPITGFISKNQV 183
           +   + E+  +    AY+ R +  ++  TL+  +S + +I    G G+    G+ S    
Sbjct: 167 VRVGVEEALCRKLNEAYIHRMLTGKAFATLRATLSMNGIITNQIGKGADQSGGYYS---- 222

Query: 184 HLLRAQSDAILVGIGTVLADDPEL-TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
             L  + D +++     LA    L   R  G     P+ II+       L    +     
Sbjct: 223 -QLMKEYDGVIISSD--LAKMSALPLSREAGTN--QPLCIIIAQGESSRLHIPSLSQEHA 277

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV---EGG---A 296
           +  I++   D PV         + +      DL+ +L +L  RG+ S+LV   E G   A
Sbjct: 278 SRAIVLA--DSPVTV---EPAGVEVAVFRQIDLESILQLLAQRGLCSVLVDFREAGESFA 332

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           ++ + F   +LV  +++      +   G+ +    G        +        V LE
Sbjct: 333 SLLNDFQEDKLVQKVVVEVLPFWLASDGLSNLAFGGSQSFPLKNLELRDVNGSVLLE 389


>gi|84496639|ref|ZP_00995493.1| riboflavin biosynthesis protein RibD [Janibacter sp. HTCC2649]
 gi|84383407|gb|EAP99288.1| riboflavin biosynthesis protein RibD [Janibacter sp. HTCC2649]
          Length = 341

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 108/364 (29%), Positives = 170/364 (46%), Gaps = 34/364 (9%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62
           S+ D ++M  AL    +    +  NP V C++V  DG ++  G     G PHAE  AL  
Sbjct: 5   STTDEQWMLRALVVGAFG-PESDANPRVGCVLVDPDGALVAEGWHQGAGTPHAEAAALAA 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A+G TAYVTLEPC+H GR+ PC+  +   G+ RVV  V DP+   +  G  WL+++
Sbjct: 64  AGERAKGCTAYVTLEPCNHTGRTEPCSHALAAAGVSRVVYAVSDPNA-SAAGGAAWLAER 122

Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+  +  ++E+E      ++L R    R  +T K+A + D     A   S  ITG  S+ 
Sbjct: 123 GVATEGGLLEAEATALNRSWLHRIRTGRPWVTWKLAATLDGRSAAADGTSQWITGPESRQ 182

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKT 239
            VH  RA+  AI+VG GT L DDP LT R     L +H P+R+I+     L+ D+++   
Sbjct: 183 DVHEQRARCGAIIVGTGTALTDDPRLTARRADGTLHDHQPLRVIMGLR-DLAPDARVFDD 241

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           +                           ++   R  ++++  L  R +  + +EGG  VA
Sbjct: 242 SAQT------------------------VHLRTRQPREVVAYLAEREIHHVWLEGGPTVA 277

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
            +F+   LVD I+ Y + +++G G        +                 G D+ +  I 
Sbjct: 278 AAFMADGLVDEIVAYIAPVLLGRGRQSVSDLGITTIADALRLEPTDTRIIGHDIRITTIL 337

Query: 357 KNLC 360
           +   
Sbjct: 338 EESR 341


>gi|212275115|ref|NP_001130669.1| hypothetical protein LOC100191772 [Zea mays]
 gi|194689788|gb|ACF78978.1| unknown [Zea mays]
          Length = 392

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 103/357 (28%), Positives = 165/357 (46%), Gaps = 23/357 (6%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            DA +M   +  +R   G TS NP V C+IV+DG V+G G     G PHAEV AL +AG 
Sbjct: 47  DDAHYMRRCVELARKAAGHTSPNPMVGCVIVRDGRVVGEGFHPKAGQPHAEVFALRDAGN 106

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            A  ATAYV+LEPC+HYGR+PPC + +I   ++ VVV + DP+  V+ +G++ L   GI 
Sbjct: 107 LAENATAYVSLEPCNHYGRTPPCTEALINAKVKEVVVGMTDPNPIVASKGIEKLQGAGIS 166

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI-GMAGCGSVPITGFISKNQV 183
           +   + E+  +    AY+ R +  ++  TL+  +S + +I    G G+    G+ S    
Sbjct: 167 VRVGVEEALCRKLNEAYIHRMLTGKAFATLRATLSMNGIITNQIGKGADQSGGYYS---- 222

Query: 184 HLLRAQSDAILVGIGTVLADDPEL-TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
             L  + D +++     LA    L   R  G     P+ II+       L    +     
Sbjct: 223 -QLMKEYDGVIISSD--LAKMSALPLSREAGTN--QPLCIIIAQGESSRLHIPSLSQEHA 277

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV---EGG---A 296
           +  I++   D PV         + +      DL+ +L +L  RG+ S+LV   E G   A
Sbjct: 278 SRAIVLA--DSPVTV---EPAGVEVAVFRQIDLESILQLLAQRGLCSVLVDFREAGESFA 332

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           ++ + F   +LV  +++      +   G+ +    G        +        V LE
Sbjct: 333 SLLNDFQEDKLVQKVVVEVLPFWLASDGLSNLAFGGSQSFPLKNLELRDVNGSVLLE 389


>gi|326520824|dbj|BAJ92775.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 468

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 103/357 (28%), Positives = 169/357 (47%), Gaps = 21/357 (5%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             DA +M   +  +R   G TS NP V C+IV++G V+G G     G PHAEV AL +AG
Sbjct: 122 DMDAHYMRRCVELARTAAGHTSPNPMVGCVIVREGKVVGEGFHPKAGQPHAEVFALRDAG 181

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           + A  ATAYV+LEPC+HYGR+PPC++ +I+  ++ VVV + DP+  V+ +G++ L   GI
Sbjct: 182 DLAENATAYVSLEPCNHYGRTPPCSEALIKAKVKEVVVGMTDPNPIVASKGIEKLRNAGI 241

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISKNQ 182
            +   + E+       AY+ R +  ++  TL+  +S +  +I   G G+    G+ S   
Sbjct: 242 DVRVGVEEALCLRLNEAYIHRMLTGKAFATLRATLSMNGIVINQIGSGTDQPGGYYS--- 298

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
              L  + D +++      A    +  R  G     P+ II+       LD   +     
Sbjct: 299 --QLAKEYDGVIISSDMAKATALPM-SREAGA--KQPLYIIIAQGQGSKLDIPFLDEESA 353

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE----GG--A 296
           +  I++   D PV         +++   D  +L+ +L +L  RG+ S+LV+    GG  A
Sbjct: 354 SNAIVLA--DSPVTV---EPAGVSVSVLDQMNLESILQLLADRGLCSVLVDFRDAGGVLA 408

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           ++   F   +LV  ++L  S + +   G       G        V        + LE
Sbjct: 409 SLLSKFQEDKLVQKVVLELSPVWMVSPGPSDLAFGGSQSFALKNVEHKEVNGTLLLE 465


>gi|307293539|ref|ZP_07573383.1| riboflavin biosynthesis protein RibD [Sphingobium chlorophenolicum
           L-1]
 gi|306879690|gb|EFN10907.1| riboflavin biosynthesis protein RibD [Sphingobium chlorophenolicum
           L-1]
          Length = 317

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 135/353 (38%), Positives = 180/353 (50%), Gaps = 45/353 (12%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+AA+  S    GL++ NP+V CLIVK+G V+GRG T  GG PHAE QAL+EA E ARGA
Sbjct: 1   MAAAIALSERGRGLSTPNPNVGCLIVKEGHVVGRGWTQKGGRPHAEAQALDEAMERARGA 60

Query: 71  TAYVTLEPCSH-YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           TAYVTLEPC H   R P CA  +   G+RRVV+ + DPD R  G+G  WL Q+GI VD  
Sbjct: 61  TAYVTLEPCFHLSSRGPRCADLMARAGVRRVVIALRDPDPRTDGQGADWLRQRGIAVDMG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +M  E    +  ++ RQ   R  +TLK+ +S D  I +A   S  ITG  ++   H+ RA
Sbjct: 121 LMAQEAAAAMRGFVLRQTLGRPAVTLKLGLSLDGRIALADGSSRWITGPDARAHAHVERA 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DAILVG GT+ AD P L  RL GL++ SP R++L  H                     
Sbjct: 181 RHDAILVGGGTLRADAPRLDVRLPGLEDRSPRRVLL-SHGDAP----------------- 222

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
                             +I     D+  L        V  LLVEGGA  A +F+ + LV
Sbjct: 223 --------------DGWEVIAAP-EDIAALP------QVDHLLVEGGAQAAAAFLRADLV 261

Query: 309 DSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           D ++LYR+ I+IG+G    G     +       +        G+D    Y+  
Sbjct: 262 DRLLLYRAPILIGDGLAGIGDIGLTDLADAHGRWRLDEERRLGNDRLEVYLRN 314


>gi|229495189|ref|ZP_04388924.1| riboflavin biosynthesis protein RibD [Porphyromonas endodontalis
           ATCC 35406]
 gi|229317632|gb|EEN83530.1| riboflavin biosynthesis protein RibD [Porphyromonas endodontalis
           ATCC 35406]
          Length = 342

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 109/340 (32%), Positives = 163/340 (47%), Gaps = 16/340 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +++ D  +M   L  +    G TS NP V  ++V    ++G G     G PHAEV     
Sbjct: 1   MTANDTLYMQRCLDLAALATGYTSPNPLVGAILVHQDRIVGEGYHHRAGEPHAEVNCFAS 60

Query: 63  AGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
              E       +T YV+LEPCSHYG++PPCA+ +++  + RVVV + DP   V+GRG+  
Sbjct: 61  VRPEDEKWIAQSTLYVSLEPCSHYGKTPPCAELVLQKRVPRVVVAMQDPFPEVAGRGIAL 120

Query: 119 LSQKGIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIG----MAGCGSVP 173
           L  KG+ V+  +  E   +    +LT   + R  +TLK A S+D  I      A      
Sbjct: 121 LRSKGVEVEVGVLEEEARWLNRFFLTAVEKNRPWVTLKWAQSRDGFIDRVREDASQRPEV 180

Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233
            +  I +  VH LR   DAILVG  T+  D+P LT R       SP  ++LD    L   
Sbjct: 181 FSSPIRQRYVHYLRHCHDAILVGRRTIQLDNPSLTNRF--WWGTSPQPVVLDSEGVLCHQ 238

Query: 234 S-KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
           + K+ + +   P  IV+ +           +N   I      +  LL  L  R + SLLV
Sbjct: 239 AYKVNQNSTSKPWFIVSPSA---FRSQPLPENCIAIERSEHFIASLLETLASRKIQSLLV 295

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
           EGGA    +F++S L D++    S  ++ E G+ +P+  G
Sbjct: 296 EGGAQTLQAFLDSGLYDAVDREVSPRLLYE-GVAAPIFSG 334


>gi|19552809|ref|NP_600811.1| pyrimidine reductase [Corynebacterium glutamicum ATCC 13032]
 gi|62390479|ref|YP_225881.1| bifunctional riboflavin-specific deaminase/reductase
           [Corynebacterium glutamicum ATCC 13032]
 gi|21324366|dbj|BAB98990.1| Pyrimidine reductase, riboflavin biosynthesis [Corynebacterium
           glutamicum ATCC 13032]
 gi|41325816|emb|CAF21605.1| PUTATIVE BIFUNCTIONAL RIBOFLAVIN-SPECIFIC DEAMINASE/REDUCTASE
           [Corynebacterium glutamicum ATCC 13032]
          Length = 328

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 112/356 (31%), Positives = 165/356 (46%), Gaps = 41/356 (11%)

Query: 12  SAALRFSR----WHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + AL  +        G TS NP V  +I+  DG V+G G TA  G PHAEV AL  AG  
Sbjct: 4   AHALDLAHHVSDQVRGTTSPNPPVGAVILDADGEVVGVGATAPPGGPHAEVVALAAAGVR 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A G TA VTLEPC+HYGR+ PC++ +++ GI  V     DP    +G G  +L++ G+  
Sbjct: 64  ANGGTAVVTLEPCNHYGRTGPCSKALLDAGIAHVFYANADPFPSAAGGG-AFLAEAGVDT 122

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +   E    L  +L      R H+TLK A + D   G     S  ITG  ++  VH  
Sbjct: 123 HFL--DERIRALEPWLVATRLGRPHVTLKFASTVDGFAGATDGTSQWITGPDARAFVHED 180

Query: 187 RAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           R++ DAI+VG GT L D+P LT R + GL E+ P R+++    ++  DS + +       
Sbjct: 181 RSKRDAIIVGTGTALTDNPSLTARTDTGLYENQPRRVVIGSR-EVPADSNLARLGYE--- 236

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
                                        + + L+ L  +G   +L+EGG  +A + +  
Sbjct: 237 -------------------------QYAGIPEALSALWDKGCRDILIEGGPTLAGAALRL 271

Query: 306 RLVDSIILYRSQIVIGEGG--IPSPLEEGYLE-KNFMCVRRDYFGSDVCLEYIGKN 358
            +VD +  Y +  ++G G   I  P E    +   F        GSDV +E + K 
Sbjct: 272 GIVDQVQAYVAPALLGAGRSVINWPQETTMDQIMRFDTTSVRQLGSDVLIEMMRKE 327


>gi|332299428|ref|YP_004441349.1| riboflavin biosynthesis protein RibD [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332176491|gb|AEE12181.1| riboflavin biosynthesis protein RibD [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 343

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 110/340 (32%), Positives = 169/340 (49%), Gaps = 15/340 (4%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             S  D  +M   L+ +    G TS NP V  +IV    +IG G   Y G PHAEV A  
Sbjct: 7   STSPSDQIYMQRCLQLAALAQGRTSPNPMVGSVIVYKDKIIGEGYHHYAGAPHAEVMAWR 66

Query: 62  EAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
              EE R     AT YV+LEPC+HYG++PPCA+ + +    RVV+ + DP  +V GRG+ 
Sbjct: 67  SVPEELRSVIGKATWYVSLEPCAHYGKTPPCAELLAKLRPARVVIAMLDPFAKVDGRGVA 126

Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP--- 173
            L + GI +    +E E       +L  Q   R ++TLK A S D+ I      +     
Sbjct: 127 RLREAGIEVSIGCLEQEAIALNRHFLVAQTLGRPYVTLKWAESADHYIDRLRHDASEAPY 186

Query: 174 -ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS- 231
             +  + +  VH LR+  DAILVG  T   DDP LT R        P+R +L  H +L  
Sbjct: 187 TFSSPLRQRSVHRLRSLHDAILVGHHTAELDDPLLTNRSG--SGGQPIR-LLWCHSRLPR 243

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
            + ++++ A    ++++       +       +++ +      ++ LLT+L  +G+ SLL
Sbjct: 244 PELRMLQDASAPTILLLPPALLEQVTDGQYPPHVSCLATTGE-VRDLLTLLHSQGIESLL 302

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           VEGGA V   F+++ L D I +  + + +   G+P+P  E
Sbjct: 303 VEGGAQVQQRFLDAGLYDEINVEHAPVEL-HEGVPAPHLE 341


>gi|220904884|ref|YP_002480196.1| riboflavin biosynthesis protein RibD [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869183|gb|ACL49518.1| riboflavin biosynthesis protein RibD [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 385

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 98/379 (25%), Positives = 158/379 (41%), Gaps = 26/379 (6%)

Query: 3   VSSFDAR-FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           +S  D   FM  A+  ++     T  NP V  ++V+DG ++ RG     G  HAEV  L 
Sbjct: 1   MSELDYTPFMREAIALAQQGRWKTCPNPMVGAVLVRDGHIVARGWHRAFGLDHAEVDCLN 60

Query: 62  EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           +A   G +    T  VTLEPC H G++PPC   ++  GI+++VV + DP+    G   + 
Sbjct: 61  DAAAQGVDPSECTLVVTLEPCCHQGKTPPCTDAVLRAGIKKIVVGLSDPNPEACGGACRL 120

Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
                 +++ +     +  +  +L  Q  +R ++ LK+A + D  I      S  I+   
Sbjct: 121 RESGLDVIEGVCADACRDLVADFLVWQQAQRPYVILKMAATLDGRIATRKGESQWISSEE 180

Query: 179 SKNQVHLLRAQS----DAILVGIGTVLADDPELTCRL---NGLQEHSPMRIILDPHFKLS 231
           S+ +V  LRA       A+LVG GT  ADDP LT R           P+  +L       
Sbjct: 181 SRQEVQRLRAGIGRCGGAVLVGGGTFRADDPRLTVRPINDGEPLGPQPLACVLTSRLPQP 240

Query: 232 -LDSKIIKTALLAPVII-VTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVG 284
             D  ++K      V +          A A R   + ++          DL  +L  +  
Sbjct: 241 DADFYLLKERPQQTVFLASPAAAASTTAKALRDMGVRVLSLGPSLRGGPDLTHMLRTMRE 300

Query: 285 R-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
                 LL EGG  +A S + + +VD   L+ + +++G+     PL  G    +     R
Sbjct: 301 ELDCPYLLCEGGGHLALSLLEAGVVDEFRLHMAPMILGDADA-QPLFSGRAPLSLDEALR 359

Query: 344 DYF------GSDVCLEYIG 356
                    G D+ +E   
Sbjct: 360 MRVTGSHISGGDIHIELRP 378


>gi|326382172|ref|ZP_08203864.1| riboflavin biosynthesis protein RibD [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198902|gb|EGD56084.1| riboflavin biosynthesis protein RibD [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 339

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 111/355 (31%), Positives = 155/355 (43%), Gaps = 36/355 (10%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  A+  S    G T+ NP V  +++  DG + G G T   G PHAEV AL  AGE ARG
Sbjct: 10  MRRAIAESEAAQGFTTPNPPVGAVVLDADGEIAGVGRTQPPGGPHAEVMALRAAGERARG 69

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-- 127
            TA VTLEPC H GR+ PC Q ++  GI  V   V DP+   +G G Q L   G+ V   
Sbjct: 70  GTAVVTLEPCDHTGRTGPCTQALLSAGIADVHFAVADPNPDAAG-GAQTLRAAGVDVHPG 128

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            +        L  +L RQ   R  +T KIA + D  I      S  ITG  ++   H +R
Sbjct: 129 VLESEARSGPLKYWLFRQKTGRPFVTAKIAATADGRIAAPDGSSQWITGPQAREHAHEVR 188

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            + DAI+VG GTVL DDP LT R    +  +H P R++L    +    +  ++      V
Sbjct: 189 GRLDAIVVGTGTVLVDDPSLTARRPDGRLLDHQPTRVVL--GLREVPAAARVRDGSAPFV 246

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
            + +                       RD + ++  L       +LVEGG  V  +F+ +
Sbjct: 247 HVAS-----------------------RDPRAVVDALPD--ALHVLVEGGPEVIGAFLAA 281

Query: 306 RLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
            LVD I  Y +  ++G G        +        F        G D+ L    +
Sbjct: 282 GLVDEIHAYLAPTILGAGRAAVSDESVATLAQAHRFRRSGLLELGEDILLILEPR 336


>gi|318057036|ref|ZP_07975759.1| putative riboflavin/cytosine deaminase [Streptomyces sp. SA3_actG]
          Length = 364

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 117/353 (33%), Positives = 170/353 (48%), Gaps = 14/353 (3%)

Query: 12  SAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
             A+  +   +G T  NP V C+++   G V G G     G PHAE+ AL  AGE ARG 
Sbjct: 11  REAIALAARGLGRTRPNPVVGCVVLDASGEVAGSGWHQRAGGPHAEIHALRAAGERARGG 70

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TA VTLEPC H GR+ PC++ +IE G+RRVV  V DP    +  G   L   G+ +   +
Sbjct: 71  TALVTLEPCDHTGRTGPCSRALIEAGVRRVVHAVADP-TDQATGGADTLRAAGVDVEHGL 129

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E E      A+LT     R H+T K A S D     A   S  IT   ++  VH LRA 
Sbjct: 130 LEREAADVNAAWLTAARLGRPHVTWKYAASLDGRTAAADGTSRWITSPEARADVHRLRAT 189

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTALLAPVIIV 248
            DA+LVG GT   DDP L  R        P+R++LD     +   ++++  A  AP ++ 
Sbjct: 190 CDAVLVGSGTARTDDPHLAVR-GIPGAPQPLRVVLDTEGTAVRGGARVLDDA--APTLVA 246

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
             +D P  A       +        DL  LL  L  R V  +L+EGGA +A +F+ +   
Sbjct: 247 LADDAPAPAHGAELLRLPRAAHGGLDLTALLAALYARDVRGILLEGGARLAGAFVAAGYT 306

Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356
           D ++ Y + +++G G  P+ L +  +      +R D       G D+ +  + 
Sbjct: 307 DRVVGYLAPVLLGAG--PAALTDAGIPTLTAALRLDVRDSTRLGPDLRITAVP 357


>gi|326331206|ref|ZP_08197500.1| riboflavin biosynthesis protein RibD [Nocardioidaceae bacterium
           Broad-1]
 gi|325950976|gb|EGD43022.1| riboflavin biosynthesis protein RibD [Nocardioidaceae bacterium
           Broad-1]
          Length = 352

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 97/319 (30%), Positives = 144/319 (45%), Gaps = 31/319 (9%)

Query: 11  MSAALRFSRWHVGL---TSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           M  AL  +         T  NP V C+++  DG +I  G     G PHAEV AL +AGE 
Sbjct: 11  MRRALDLAAAIGAPGPATYPNPRVGCVLLGADGSMIAEGYHRGPGTPHAEVDALAKAGEA 70

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATA VTLEPC+H GR+ PC+Q +IE G+ RVV    DP+   +G           + 
Sbjct: 71  ARGATAVVTLEPCNHTGRTGPCSQALIEAGVARVVYAQSDPNPVAAGGAATLKQAGVEVE 130

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +  +E +     +      +R ++T K A + D     A   S  ++   ++   H L
Sbjct: 131 QGLYAAEARELNRVWTRAAELQRPYVTWKFATTLDGRSAAADGTSRWVSSRAARLDTHKL 190

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALLAP 244
           RA SD +LVG  TV  DDP LT R    +     P+R+++     L  D +I      + 
Sbjct: 191 RALSDTMLVGTNTVAVDDPALTVRDLEDRPVGVQPLRVVMGER-DLPEDRRIFDAQAPS- 248

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
                                  ++   RD    L  L  R    + +EGG  +A +F+ 
Sbjct: 249 -----------------------LHLRTRDPHSALAALWERERRHVFLEGGPTLAAAFLE 285

Query: 305 SRLVDSIILYRSQIVIGEG 323
           + LVD I++Y +  ++G G
Sbjct: 286 AGLVDEIVVYVAPFLLGAG 304


>gi|116251387|ref|YP_767225.1| riboflavin biosynthesis protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115256035|emb|CAK07116.1| putative riboflavin biosynthesis protein [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 448

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 146/253 (57%), Positives = 187/253 (73%), Gaps = 1/253 (0%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M ++  D RFM+AA+R SRWH+G T+TNPSV CLIVKDG+++GR VTA  G PHAE QAL
Sbjct: 1   MSITPHDERFMAAAIRLSRWHLGRTATNPSVGCLIVKDGVIVGRAVTALSGRPHAETQAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EA   ARGATAYVTLEPCSH+G++PPC++ +I  G+ RVV+ V DPD RVSGRG+  L 
Sbjct: 61  AEASALARGATAYVTLEPCSHHGKTPPCSEALIAYGVARVVISVTDPDPRVSGRGIAMLR 120

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI VD  ++E+EG+  L AYLTRQ + R ++TLK+AVS D MIG  G G V ITG ++
Sbjct: 121 EAGIEVDAGVLEAEGRHSLAAYLTRQTKNRPYVTLKLAVSADGMIGREGEGQVAITGPLA 180

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           + Q   LRA++DAILVGIGT +ADDP LT R  GL+  SP+RI+LDP   L L SK+++T
Sbjct: 181 RAQAQALRAETDAILVGIGTAIADDPLLTVRSPGLESQSPIRIVLDPFLALPLTSKLVET 240

Query: 240 ALLAPVIIVTEND 252
           A   PVI+V   +
Sbjct: 241 ARQVPVIVVASEE 253



 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/101 (36%), Positives = 52/101 (51%)

Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
              A     + +++C+    + LL  L  RG++SLLVEGGA  A  F+ + LVD + LY+
Sbjct: 346 RRAALEAAGVEVVHCNPYHPEVLLPALATRGISSLLVEGGAKTARLFLKAGLVDRVQLYQ 405

Query: 316 SQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
           +  VIGE GI SPL+   +   F       FG D   EY  
Sbjct: 406 APAVIGERGIESPLDATDIPSGFAHTGTLLFGEDRLDEYER 446


>gi|167586436|ref|ZP_02378824.1| riboflavin biosynthesis protein RibD [Burkholderia ubonensis Bu]
          Length = 257

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 99/257 (38%), Positives = 142/257 (55%), Gaps = 8/257 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +   +  T+ NP V C+IVKDG VIG G T   G  HAEVQAL++
Sbjct: 2   FSDTDFAHMQRALALAARGMYTTTPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G +  G+T YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L
Sbjct: 62  ARSRGHDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++  E       +++R    R  + +K A S D    +    S  ITG  
Sbjct: 122 RDAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGDD 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           ++   H  RA++ AIL GIGTV  DDP+LT R        P R+++D   +L LD+++++
Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDDPQLTVR-GIDTPRQPRRVLVDSRLELPLDARLLE 240

Query: 239 TALLAPVIIVTENDDPV 255
               AP++I     D  
Sbjct: 241 G---APLLIFCGRLDAA 254


>gi|313885967|ref|ZP_07819705.1| riboflavin biosynthesis protein RibD [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924497|gb|EFR35268.1| riboflavin biosynthesis protein RibD [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 343

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 109/340 (32%), Positives = 167/340 (49%), Gaps = 15/340 (4%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             S  D  +M   L+ +    G TS NP V  +IV    +IG G   Y G PHAEV A  
Sbjct: 7   STSPSDQIYMQRCLQLAALAQGRTSPNPMVGSVIVYKDKIIGEGYHHYAGAPHAEVMAWR 66

Query: 62  EAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
              EE R     AT YV+LEPC+HYG++PPCA+ +      RVV+ + DP  +V GRG+ 
Sbjct: 67  SVPEELRSVIGKATWYVSLEPCAHYGKTPPCAELLAGLRPARVVIAMLDPFAKVDGRGVA 126

Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP--- 173
            L + GI +    +E         +L  Q   R ++TLK A S D+ I      +     
Sbjct: 127 RLREAGIEVSIGCLEQAAIALNRHFLVAQTLGRPYVTLKWAESADHYIDRLRHDASEAPY 186

Query: 174 -ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS- 231
             +  + +  VH LR+  DAILVG  T   DDP LT R        P+R +L  H +L  
Sbjct: 187 TFSSPLRQRSVHRLRSLHDAILVGHHTAELDDPLLTNRSG--SGGQPIR-LLWCHSRLPR 243

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
            + ++++ A    ++++       +       +++ +      ++ LLT+L  +G+ SLL
Sbjct: 244 PELRMLQDASAPTILLLPPALLEQVTDGQYPTHVSCLATTGE-VRDLLTLLHSQGIESLL 302

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           VEGGA V   F+++ L D I +  + + +   G+P+P  E
Sbjct: 303 VEGGAQVLQRFLDAGLYDEINVEHAPVEL-REGVPAPHLE 341


>gi|215430296|ref|ZP_03428215.1| putative bifunctional riboflavin biosynthesis protein RIBG:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           [Mycobacterium tuberculosis EAS054]
 gi|289753491|ref|ZP_06512869.1| riboflavin-specific deaminase [Mycobacterium tuberculosis EAS054]
 gi|289694078|gb|EFD61507.1| riboflavin-specific deaminase [Mycobacterium tuberculosis EAS054]
          Length = 339

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 112/364 (30%), Positives = 168/364 (46%), Gaps = 40/364 (10%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
           V S D   M  A+  S    G T  NP V  +IV  +G ++G G T   G  HAEV AL 
Sbjct: 6   VKSIDEA-MGLAIEHSYQVKGTTYPNPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALR 64

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG  A GA   VT+EPC+HYG++PPC   +IE  +  VV  V DP+  ++G G   LS 
Sbjct: 65  RAGGLATGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADPN-GIAGGGAGRLSA 123

Query: 122 KGIIVDRMMESEGKI--FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
            G+ V   + +E      L  +L +Q     ++T K A S D     A   S  I+   +
Sbjct: 124 AGLQVRSGVLAEQVAAGPLREWLHKQRTGLPYVTWKYATSIDGRSAAADGSSQWISSEAA 183

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKII 237
           +  +H  RA +DAILVG GTVLADDP LT RL    L    P+R+++     +  +++++
Sbjct: 184 RLDLHRRRAIADAILVGTGTVLADDPALTARLADGSLAPQQPLRVVVGKR-DIPPEARVL 242

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                                         +     +  ++L  L  R  T +L+EGG  
Sbjct: 243 NDEART------------------------MMIRTHEPMEVLRALSDR--TDVLLEGGPT 276

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           +A +F+ +  ++ I+ Y + I++G    P    +     N     R  F S   +E +G 
Sbjct: 277 LAGAFLRAGAINRILAYVAPILLGG---PVTAVDDVGVSNITNALRWQFDS---VEKVGP 330

Query: 358 NLCL 361
           +L L
Sbjct: 331 DLLL 334


>gi|31792603|ref|NP_855096.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Mycobacterium bovis AF2122/97]
 gi|121637339|ref|YP_977562.1| putative bifunctional riboflavin biosynthesis protein RIBG:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|215426746|ref|ZP_03424665.1| putative bifunctional riboflavin biosynthesis protein RIBG:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           [Mycobacterium tuberculosis T92]
 gi|224989814|ref|YP_002644501.1| putative riboflavin biosynthesis protein [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|260186348|ref|ZP_05763822.1| putative riboflavin biosynthesis protein [Mycobacterium
           tuberculosis CPHL_A]
 gi|260200464|ref|ZP_05767955.1| putative riboflavin biosynthesis protein [Mycobacterium
           tuberculosis T46]
 gi|289442854|ref|ZP_06432598.1| riboflavin biosynthesis protein RibD [Mycobacterium tuberculosis
           T46]
 gi|289447005|ref|ZP_06436749.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           CPHL_A]
 gi|289749967|ref|ZP_06509345.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           T92]
 gi|31618192|emb|CAD94305.1| PROBABLE BIFUNCTIONAL riboflavin biosynthesis protein RIBG :
           Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (Riboflavin-specific deaminase) +
           5-amino-6-(5-phosphoribosylamino) uracil reductase (HTP
           reductase) [Mycobacterium bovis AF2122/97]
 gi|121492986|emb|CAL71457.1| Probable bifunctional riboflavin biosynthesis protein RIBG :
           Diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224772927|dbj|BAH25733.1| putative riboflavin biosynthesis protein [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|289415773|gb|EFD13013.1| riboflavin biosynthesis protein RibD [Mycobacterium tuberculosis
           T46]
 gi|289419963|gb|EFD17164.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           CPHL_A]
 gi|289690554|gb|EFD57983.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           T92]
          Length = 339

 Score =  262 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 113/364 (31%), Positives = 168/364 (46%), Gaps = 40/364 (10%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
           V S D   M  A+  S    G T  NP V  +IV  +G ++G G T   G  HAEV AL 
Sbjct: 6   VKSIDEA-MGLAIEHSYQVKGTTYPNPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALR 64

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG  A GA   VT+EPC+HYG++PPC   +IE  +  VV  V DP+  ++G G   LS 
Sbjct: 65  RAGGLATGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADPN-GIAGGGAGRLSA 123

Query: 122 KGIIVDRMMESEGKI--FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
            G+ V   + +E      L  +L +Q     H+T K A S D     A   S  I+   +
Sbjct: 124 AGLQVRSGVLAEQVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAA 183

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKII 237
           +  +H  RA +DAILVG GTVLADDP LT RL    L    P+R+++     +  +++++
Sbjct: 184 RLDLHRRRAIADAILVGTGTVLADDPALTARLADGSLAPQQPLRVVVGKR-DIPPEARVL 242

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                                         +     +  ++L  L  R  T +L+EGG  
Sbjct: 243 NDEART------------------------MMIRTHEPMEVLRALSDR--TDVLLEGGPT 276

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           +A +F+ +  ++ I+ Y + I++G    P    +     N     R  F S   +E +G 
Sbjct: 277 LAGAFLRAGAINRILAYVAPILLGG---PVTAVDDVGVSNITNALRWQFDS---VEKVGP 330

Query: 358 NLCL 361
           +L L
Sbjct: 331 DLLL 334


>gi|312977170|ref|ZP_07788918.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus
           CTV-05]
 gi|310895601|gb|EFQ44667.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus
           CTV-05]
          Length = 355

 Score =  262 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 107/351 (30%), Positives = 171/351 (48%), Gaps = 8/351 (2%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M +   D  +M+ AL  ++     T  NP V  +IVK+G V+  G   + G  HAE  A+
Sbjct: 1   MILMEKDNFYMNLALEEAKKGRYQTWKNPMVGAVIVKNGQVLATGYHHHYGQNHAERDAI 60

Query: 61  EEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
            +   E+   +T YVTLEPC+HYG+ PPC+  II+ GI+RVVV   DP   V+G+G+  L
Sbjct: 61  SKLTPEQLFNSTLYVTLEPCNHYGKQPPCSDLIIKSGIKRVVVGQIDPHKLVTGKGIAKL 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            + G+ +   ++  +       Y          IT+K A S DN + M      PIT   
Sbjct: 121 QENGVQVTTGVLADDASKLNKFYSYFYQYGFPWITVKEATSLDNKVAMR-GQRTPITNQA 179

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
              QVH  RA   AI++G  T + DDP L  R N   ++ P+RII+D   +L    ++  
Sbjct: 180 VYQQVHSERADYQAIMIGSSTAIIDDPIL--RTNVKSDYPPIRIIIDRRGRLLNHLRLRL 237

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
            +   P  I T N   +    F    I II+     ++++   L  + + S+ VEGG  +
Sbjct: 238 LSDTNPTWIFTPNKQ-MSKNNFTNSKIKIIHLATNKIQEVFDYLSTKEIQSVYVEGGPTL 296

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
             + +N   V+ +I Y + I +G+ G+   +    +      V++  FG++
Sbjct: 297 EKAIMNEIFVNEVIKYTAPIFLGDEGVTGLVPNETVP--LTNVKKTAFGNN 345


>gi|296395033|ref|YP_003659917.1| riboflavin biosynthesis protein RibD [Segniliparus rotundus DSM
           44985]
 gi|296182180|gb|ADG99086.1| riboflavin biosynthesis protein RibD [Segniliparus rotundus DSM
           44985]
          Length = 343

 Score =  262 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 121/364 (33%), Positives = 175/364 (48%), Gaps = 40/364 (10%)

Query: 1   MPVSSF--DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEV 57
           MPV     D  FM  A+  SR   G TS NP V  ++V  DG ++GRG T   G  HAEV
Sbjct: 1   MPVRDLPVDEAFMREAIAVSRLARGRTSPNPPVGAVLVSPDGQIVGRGATRPPGQEHAEV 60

Query: 58  QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            AL +AGE ARGATAYVTLEPC+H GR+ PCA+ +++ G+  VV  V DP+ R  G    
Sbjct: 61  VALAQAGERARGATAYVTLEPCNHVGRTGPCARALVDAGVAAVVCAVPDPNQRSGGGAKT 120

Query: 118 WLSQK-GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
             +   G+ V  +        L  +L  Q   R H+T K A + D         S  ITG
Sbjct: 121 LEAAGVGVRVGVLAHEARTGPLREWLHAQRTGRPHVTWKFAATLDGRSAARDGSSQWITG 180

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDS 234
              +  VH +RA+ DAI+VG GT LADDP LT RL    L    P R+++    +L   +
Sbjct: 181 PQIRKSVHAVRAELDAIIVGTGTALADDPWLTARLPDGSLAPRQPTRVVV-GMTELPRGA 239

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           +++  +  AP ++                         RD  + L +L       +L+EG
Sbjct: 240 RVLDGS--APTVLA----------------------KTRDPAEALAMLGD--AVHVLLEG 273

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSD 349
           G  +A +F+ + LVD +  + + +++G G  P+ L +  +        F        G D
Sbjct: 274 GPTLAAAFLRAGLVDLVQAHIAPVLLGAG--PAALGDLGIATLADALRFTVEEVRQVGRD 331

Query: 350 VCLE 353
           V ++
Sbjct: 332 VLVQ 335


>gi|23008993|ref|ZP_00050209.1| COG1985: Pyrimidine reductase, riboflavin biosynthesis
           [Magnetospirillum magnetotacticum MS-1]
          Length = 284

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 114/274 (41%), Positives = 155/274 (56%), Gaps = 2/274 (0%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
              + D R M  AL   R ++G T  NPSV  ++V +G ++G+ VTA GG PHAE  AL 
Sbjct: 10  SQHALDRRAMRLALALGRRNLGRTWPNPSVGAVVVAEGRIVGQAVTAPGGRPHAEPLALA 69

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AGE ARGAT YVTLEPCSHYGR+PPC +  I  GIRRVV  ++DPD RV+GRG   L  
Sbjct: 70  MAGEAARGATLYVTLEPCSHYGRTPPCTEATIASGIRRVVTAIEDPDPRVAGRGHAQLRA 129

Query: 122 KG-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            G  +   ++  E       + +R    R  + LK+A ++D     +    + ITG I+ 
Sbjct: 130 AGLTVETGLLREEAARDHRGHFSRVTRGRPSLHLKLARTRDGFAAPSTGERLKITGPIAD 189

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             VHL RA +DAI+VGIGT  ADDP LT RL GL + SP+RI+LD   +L+  S +++ A
Sbjct: 190 GAVHLWRAHADAIMVGIGTARADDPSLTVRLPGLADRSPVRIVLDSTLRLNPASHLVRGA 249

Query: 241 LLAPVIIVTENDDPVLALAFRKK-NINIIYCDCR 273
              P +++T    P  A        + I +    
Sbjct: 250 RDLPTLVLTGRGAPAHARRMLASFGVEIAFVPTD 283


>gi|295692792|ref|YP_003601402.1| riboflavin biosynthesis protein ribd [Lactobacillus crispatus ST1]
 gi|295030898|emb|CBL50377.1| Riboflavin biosynthesis protein ribD [Lactobacillus crispatus ST1]
          Length = 352

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 107/347 (30%), Positives = 170/347 (48%), Gaps = 8/347 (2%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D  +M+ AL  ++     T  NP V  +IVK+G V+  G   + G  HAE  A+ +  
Sbjct: 2   EKDTFYMNLALEEAKKGRYQTWKNPMVGAVIVKNGQVLATGYHHHYGQNHAERDAISKLT 61

Query: 65  -EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            E+   +T YVTLEPC+HYG+ PPC+  II+ GI+RVVV   DP   V+G+G+  L + G
Sbjct: 62  PEQLFNSTLYVTLEPCNHYGKQPPCSDLIIKSGIKRVVVGQIDPHKLVTGKGIAQLQKNG 121

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +   ++  +       Y          IT+K A S DN + M      PIT      Q
Sbjct: 122 IQVTTGVLADDASKLNKFYSYFYQYGFPWITVKEATSLDNKVAMR-GQRTPITNQAVYQQ 180

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  RA   AI++G  T + DDP L  R N   ++ P+RII+D   +L    ++   +  
Sbjct: 181 VHSERADYQAIMIGSSTAIIDDPIL--RTNVKSDYPPIRIIIDRRGRLLNHLRLRLLSDT 238

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            P  I T+N   +    F    I II+     ++++   L  + + S+ VEGG  +  + 
Sbjct: 239 NPTWIFTQNKQ-MSKNNFTNSKIKIIHLATNKIQEVFDYLSTKEIQSVYVEGGPTLEKAI 297

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           +N   V+ +I Y + I +G+ G+   +    +      V++  FG++
Sbjct: 298 MNEIFVNEVIKYTAPIFLGDEGVTGLVPNETVP--LTNVKKTAFGNN 342


>gi|282877095|ref|ZP_06285937.1| riboflavin biosynthesis protein RibD [Prevotella buccalis ATCC
           35310]
 gi|281300777|gb|EFA93104.1| riboflavin biosynthesis protein RibD [Prevotella buccalis ATCC
           35310]
          Length = 326

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 99/359 (27%), Positives = 153/359 (42%), Gaps = 58/359 (16%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M     D  +M   L+ ++    L   NP V  +IV  G ++G G     G  HAEV A 
Sbjct: 1   MNQEELDKMYMRRCLQLAKQGRALAKPNPMVGAVIVYQGRILGEGYHVRCGQAHAEVNAF 60

Query: 61  EEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
                        +T YV+LEPC H G++PPCA  II   ++RVV    DP  +V GRG+
Sbjct: 61  ASVRPADEPLLPQSTLYVSLEPCCHTGKTPPCADLIIRKHVKRVVCGCIDPFAQVHGRGV 120

Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
           Q L   GI +   +++ E +     +    + +R +I LK A + +  +  A    + ++
Sbjct: 121 QKLRDAGIDVTVGVLDEECRALNRQFNVYNMLERPYILLKWAQTINGFLD-ADGEPLALS 179

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
              ++  VH LRAQ DAILVG  T   + P LT R        P+R++L           
Sbjct: 180 TPFTQMLVHRLRAQYDAILVGRVTDEREHPRLTVR--EWSGPDPLRLVL----------- 226

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
                                              D   L +L+  L  + V SL+VEGG
Sbjct: 227 ----------------------------------RDGITLPQLMADLHQQHVQSLMVEGG 252

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           A    SFI++ L D I +  S  ++  GG  +P+    L    + ++R+ +  +V   +
Sbjct: 253 AKTLQSFIDAGLWDEIRVETS-RLLVSGGTKAPV----LPAGLILLQREVYDGNVVDTF 306


>gi|259502164|ref|ZP_05745066.1| ubiquinol-cytochrome c reductase [Lactobacillus antri DSM 16041]
 gi|259169782|gb|EEW54277.1| ubiquinol-cytochrome c reductase [Lactobacillus antri DSM 16041]
          Length = 352

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 115/351 (32%), Positives = 170/351 (48%), Gaps = 14/351 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGE 65
           D   M  A+  ++     T  NP V  ++VK+G V+  G T   G  HAE  AL   A  
Sbjct: 3   DETLMERAVAAAKQAGAATWRNPQVGAVVVKNGHVLATGHTQPYGGSHAERDALSRLAPG 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A GAT YVTLEPC+HYG+ PPC Q II  GIRRVVV   DP   V+G+G+  L Q GI 
Sbjct: 63  QAAGATLYVTLEPCNHYGKQPPCTQLIINSGIRRVVVAQLDPHALVTGKGVANLRQHGIE 122

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V  +   +       Y       R  +TLK A+S D  +         IT      +VH
Sbjct: 123 VVTGVGAQQAAQVNPHYDFFYRHHRPWVTLKQALSLDGRVSAGPGQRTAITNQAVYRRVH 182

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLS--LDSKIIKTAL 241
             RA    I++G  T + DDP L   L  +Q  H P+RI+LD   +L+   D ++     
Sbjct: 183 QERAGFQGIVIGSTTAIVDDPTL---LPSVQLAHLPIRIVLDRRGRLADYPDLRLFNDG- 238

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           LAP  + TEN      L        ++      +  ++ +L   GV SL VEGG  + ++
Sbjct: 239 LAPTWVFTENAALPDRL---GPWARVLVLPDCSVPAVVQVLAEEGVQSLYVEGGPTIQNA 295

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           F  + LV+ ++ Y S +++G+ G+P        +  F   + +  G++V +
Sbjct: 296 FARAGLVEEVLTYLSPVMLGQEGVPGFAPPETWK--FQDQQLELLGNNVRI 344


>gi|170741291|ref|YP_001769946.1| riboflavin biosynthesis protein RibD [Methylobacterium sp. 4-46]
 gi|168195565|gb|ACA17512.1| riboflavin biosynthesis protein RibD [Methylobacterium sp. 4-46]
          Length = 398

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 136/364 (37%), Positives = 184/364 (50%), Gaps = 12/364 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPHAEVQ 58
            +S D R+M  AL   R H+G T  NPSV  ++V        ++ +GVT  GG PHAE  
Sbjct: 19  QASLDRRYMRLALALGRRHLGRTWPNPSVGAVLVAGPPGAERILAQGVTQPGGRPHAERV 78

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           AL EAGE ARGAT YVTLEPCSH+GR+ PCA  ++  G+ RVV  ++DPD RV+GRG   
Sbjct: 79  ALAEAGEAARGATLYVTLEPCSHHGRTSPCADAVLAAGVARVVSAMNDPDPRVAGRGHGR 138

Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
           L   G+ V     +E     HA    +V               +     G G + ITG +
Sbjct: 139 LRAGGVAVTVGPCAEEAARDHAGHVMRVTTGRPALCLKLARTADGFAAGGAGRLLITGAL 198

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           +  +VH LRA SDAILVGIGT LADDP LT RL GL + SP+ ++LDP  +L   +++++
Sbjct: 199 ANAEVHRLRAHSDAILVGIGTALADDPALTVRLPGLGDRSPLPVVLDPQLQLPPGARLLR 258

Query: 239 TALLAPVIIVTENDDPVLA-LAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLV 292
               A  +I+     P  A  A R+    ++          DL   L  L  RG+T +  
Sbjct: 259 PGGRAQTLILAGAAAPPAAERALREAGAEVLRLPAGPDGRPDLAASLRALGARGITRVFC 318

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS--PLEEGYLEKNFMCVRRDYFGSDV 350
           EGG  +A +   + LVDS +L      +G+ G P+  P     L      V     G D 
Sbjct: 319 EGGPTLADALAAADLVDSCLLLTGAAPLGQPGKPAIGPALAARLAGGLRRVAERPLGPDR 378

Query: 351 CLEY 354
              Y
Sbjct: 379 LTTY 382


>gi|282880496|ref|ZP_06289203.1| riboflavin biosynthesis protein RibD [Prevotella timonensis CRIS
           5C-B1]
 gi|281305599|gb|EFA97652.1| riboflavin biosynthesis protein RibD [Prevotella timonensis CRIS
           5C-B1]
          Length = 314

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 99/351 (28%), Positives = 150/351 (42%), Gaps = 54/351 (15%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           +   + D  +M   L+ ++    L   NP V  ++V    +IG G     G  HAEV A 
Sbjct: 3   INQDAIDKMYMRRCLQLAKQGRALAKPNPMVGAVLVCGDRIIGEGYHIKYGEAHAEVNAF 62

Query: 61  EEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
               ++       +T YV+LEPCSHYG++PPCA  I+E  ++RVV    D   +V GRG+
Sbjct: 63  AAVRQQDEHLLPESTLYVSLEPCSHYGKTPPCADLIVEKRVKRVVCGCIDVFAKVQGRGI 122

Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
             L + GI +   ++E E K+    +       R +I LK A + +  I      ++ ++
Sbjct: 123 DKLRKAGIEVTVGVLEEECKLLNRQFNVFNTLHRPYILLKWAQTANGFIDD-NGRAIALS 181

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
              +K  VH LR++ DAILVG  T   + P+L  R       SP+R++L           
Sbjct: 182 SPFTKMLVHKLRSEYDAILVGRVTDEREHPQLNVR--EWSGPSPLRLVL----------- 228

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
                                                  L +LL  L  R + SLLVEGG
Sbjct: 229 ----------------------------------HHGISLPELLDDLYQRNLQSLLVEGG 254

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
           A    SFIN+ L D I +  + + +   G P+P     +E     + R Y 
Sbjct: 255 ATTLQSFINANLWDEIRIETAPVTV-TNGTPAPRVPQGVELIAHEIHRKYI 304


>gi|167570902|ref|ZP_02363776.1| riboflavin biosynthesis protein RibD [Burkholderia oklahomensis
           C6786]
          Length = 246

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 92/244 (37%), Positives = 136/244 (55%), Gaps = 5/244 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +   +  T+ NP V C+IV++ +VIG G T   G  HAEVQAL++
Sbjct: 2   FSESDFTHMQRALALAARGMYTTTPNPRVGCVIVQNDVVIGEGFTQPAGQDHAEVQALKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + R AT YVTLEPCSH+GR+PPCA  +I+  + +VV  ++DP+ +VSGRGL  L
Sbjct: 62  ARARGGDLRDATVYVTLEPCSHFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++  E       +++R    R  + +K A S D    +A   S  ITG  
Sbjct: 122 RDAGIDVRCGLLTHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           +++  H  RA++ AIL GIGTV  DDP+L  R        P R+++D    + L +++++
Sbjct: 182 ARDDGHKWRARACAILTGIGTVREDDPQLNVR-GVDTPRQPRRVLIDSRLDIPLSARLLE 240

Query: 239 TALL 242
              L
Sbjct: 241 GGSL 244


>gi|332670474|ref|YP_004453482.1| riboflavin biosynthesis protein RibD [Cellulomonas fimi ATCC 484]
 gi|332339512|gb|AEE46095.1| riboflavin biosynthesis protein RibD [Cellulomonas fimi ATCC 484]
          Length = 395

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 119/362 (32%), Positives = 177/362 (48%), Gaps = 41/362 (11%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE 61
           V+  +   M  A+  +R        NP V C+++  DG V+G G  A  G PHAEV AL 
Sbjct: 19  VTPLEVAAMRQAMLLARRG-PRHGANPRVGCVLLTPDGSVVGEGWHAGAGTPHAEVAALR 77

Query: 62  EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           +A   G    GATA VTLEPC H GR+ PC Q ++  G+RRVVV V DP+  V+  G + 
Sbjct: 78  DAASRGLPTDGATAVVTLEPCDHTGRTGPCTQALLAAGVRRVVVSVPDPNP-VAAGGAER 136

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L   G+ +V  ++  +G+  L  +L      R  +TLK+A S D  +  A   S  IT  
Sbjct: 137 LRAAGVDVVTDVLAPDGRTLLGTWLASVERGRPFVTLKLATSLDGRVAAADGSSRWITSD 196

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSK 235
           +S++  H LRA+ DAI VG GTVLADDP LT R    + H   P+R+++  H  +   ++
Sbjct: 197 VSRHHAHDLRAEVDAIAVGTGTVLADDPSLTARNAAGELHRDQPLRVVV-GHRDVPAGAR 255

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
           +                              +++    D   +L +L  R V  LLVEGG
Sbjct: 256 L------------------------HGPGGEVVHVRSHDPADVLRVLAEREVRHLLVEGG 291

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDV 350
             +A +F+ +RLVD +  Y + +++G G  PS + +  +      +R         G DV
Sbjct: 292 PTLAAAFLRARLVDEVHAYVAPVLLGAG--PSAVADLGVTGIDGALRLTMRSVLPLGPDV 349

Query: 351 CL 352
            +
Sbjct: 350 LV 351


>gi|307564973|ref|ZP_07627490.1| riboflavin biosynthesis protein RibD [Prevotella amnii CRIS 21A-A]
 gi|307346286|gb|EFN91606.1| riboflavin biosynthesis protein RibD [Prevotella amnii CRIS 21A-A]
          Length = 313

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 107/360 (29%), Positives = 166/360 (46%), Gaps = 55/360 (15%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQA 59
           M +   D  +M   L+ ++  + L   NP V  +IV D G +IG G     G  HAEV A
Sbjct: 1   MELKEIDEMYMRRCLQLAKNGMLLAKPNPMVGAVIVSDNGRIIGEGYHICYGKEHAEVNA 60

Query: 60  LEEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
                ++       +T YV LEPCSH+G++PPCA  II+ G+ RVV    DP   VSGRG
Sbjct: 61  FASVRKKDEHLLSKSTIYVNLEPCSHFGKTPPCADLIIKKGVGRVVCGCIDPFSVVSGRG 120

Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           +Q + + GI +   ++E E       ++T   +KR +I LK A + +  IG+     + I
Sbjct: 121 VQRIREAGIPVSVGVLERECLALNKRFITFNTKKRPYIILKWAQTANGFIGIK-GDVLKI 179

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           +   +K  VH LRA++DAI+VG  T + + P+L  R       SP++++L        ++
Sbjct: 180 STSFTKMLVHKLRAENDAIIVGRNTEMLEHPQLNVR--KWWGKSPLKVVLSSTL---PEA 234

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
                                                  D+  LL  L  R   S+++EG
Sbjct: 235 -------------------------------------IHDIPTLLNELHRRMCQSVIIEG 257

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           GA    +FI + L D I +  S + I + GI +P     L  +   V+++YF  +V   Y
Sbjct: 258 GAMTLENFIKNDLYDEIRVEESSLTI-KEGIKAP----QLPTDIRVVKKEYF-DNVITTY 311


>gi|226306507|ref|YP_002766467.1| riboflavin biosynthesis bifunctional protein RibG [Rhodococcus
           erythropolis PR4]
 gi|226185624|dbj|BAH33728.1| riboflavin biosynthesis bifunctional protein RibG [Rhodococcus
           erythropolis PR4]
          Length = 350

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 111/346 (32%), Positives = 167/346 (48%), Gaps = 34/346 (9%)

Query: 20  WHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEP 78
              G TS NP V  +I+  DG + G G+T   G PHAEV AL+EAG+ ARG TA VTLEP
Sbjct: 25  SARGFTSPNPPVGAVILAADGTIAGVGMTQPPGGPHAEVVALDEAGDAARGGTAVVTLEP 84

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI-F 137
           C+H GR+ PC+Q +I+ G+  VV  V DP+   SG     +     +   +   E +   
Sbjct: 85  CNHQGRTGPCSQALIDAGVSAVVYAVGDPNPEASGGAATLMRAGISVTAGLRAPEVEAGP 144

Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
           L A+L +Q   R HIT K A S D         S  ITG  ++ +VH  RAQ DAI+VG 
Sbjct: 145 LRAWLHKQRTGRPHITWKYAASLDGRSAAEDGTSQWITGPQARARVHAQRAQIDAIVVGT 204

Query: 198 GTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
           GTV ADDP LT R     L  H P+R+++    ++   + ++     AP ++        
Sbjct: 205 GTVFADDPWLTARQPTGELAAHQPVRVVVGKR-EIPSTASVLDD--TAPTLV-------- 253

Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
                          +  ++ +++  L     T +L+EGG  +A +F+ +  VD I  Y 
Sbjct: 254 --------------LNTDNIDEVVEALGEY--TDVLLEGGPRLAGAFLAAGYVDVIEAYI 297

Query: 316 SQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           + I++G G    + + +        F        G D+ L  + ++
Sbjct: 298 APILLGAGASALVDAGVHTITDAHRFRLESAVTIGPDILLSLVPES 343


>gi|330718204|ref|ZP_08312804.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Leuconostoc fallax KCTC 3537]
          Length = 346

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 103/351 (29%), Positives = 164/351 (46%), Gaps = 19/351 (5%)

Query: 7   DARFMSAALRFSRWH-VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D   M+ A + +      LT  NP V  +IVKD +V+  G     G  HAE+    +  +
Sbjct: 3   DLTLMALAGKTAAQANKDLTFENPRVGAVIVKDNVVLATGYHHQFGQEHAEMNTFHQLKD 62

Query: 66  EAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
            A+   AT YVTLEPCS +G+   CAQ + + G+RRVV+   DP+   +G G+  L Q G
Sbjct: 63  PAQVIDATMYVTLEPCSTHGKVGSCAQSMAKWGLRRVVIGSIDPNPSTNGHGVAILKQAG 122

Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
           I VD +     +     +      +  ++ LK+A S++ ++       + +T   +   V
Sbjct: 123 IQVDVLNTEHSRRLNPEFHYYFEHRLPYVQLKLATSKNGIVSDNAKTRIKLTNHKADIDV 182

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  RA   AIL+G  T L D P LT R   L    P+RI+LD   +L      IK     
Sbjct: 183 HQERASKSAILIGSQTFLTDWPSLTVRYLALHHPQPLRIVLDRRGRLQN----IKFDFSN 238

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
             +I TEN       A+ K++ N +     DL +       + + S++VEGG ++  SFI
Sbjct: 239 RWLIYTENHAFAEKHAYVKESHNGLIGVLNDLAQ------QQQIQSIMVEGGPSLIQSFI 292

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
              L +  ++YR+  ++ + G+ S   +   ++          G+ V L Y
Sbjct: 293 AQDLWNEYLIYRTDKLLLDSGLASVTLQQNPDEMLT------IGNAVKLRY 337


>gi|15827206|ref|NP_301469.1| bifunctional riboflavin-specific deaminase/reductase [Mycobacterium
           leprae TN]
 gi|221229684|ref|YP_002503100.1| putative bifunctional riboflavin-specific deaminase/reductase
           [Mycobacterium leprae Br4923]
 gi|13092754|emb|CAC30063.1| putative bifunctional riboflavin-specific deaminase/reductase
           [Mycobacterium leprae]
 gi|219932791|emb|CAR70648.1| putative bifunctional riboflavin-specific deaminase/reductase
           [Mycobacterium leprae Br4923]
          Length = 339

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 111/367 (30%), Positives = 175/367 (47%), Gaps = 42/367 (11%)

Query: 1   MPVSSFDA--RFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEV 57
           M V + D+    M  A+  S    G T  NP V  +IV  DG V+G G T   G  HAEV
Sbjct: 1   MNVQTVDSLDAAMRLAVEQSYLVKGATYPNPPVGAVIVDPDGRVVGVGATEPAGGDHAEV 60

Query: 58  QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            AL  AG  A GA A VTLEPC+HYG++PPC   ++E  + +V   + DP+   +G G  
Sbjct: 61  VALRSAGVTAAGAIAVVTLEPCNHYGKTPPCVNALLEAKVDKVAYAIADPNA-SAGGGAA 119

Query: 118 WLSQKGIIVDRMMESE--GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
            L+  G+ V   + ++      L  +L +Q     H+T K A S D     A   S  ++
Sbjct: 120 RLTAAGVHVQSGVLADLVTAGPLREWLHKQRTGLPHVTWKYASSIDGRSAAADGSSRWLS 179

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLD 233
              S+  +H  RA +DAI+VG GTVLAD+P LT RL    L +  P+R+++    ++ L+
Sbjct: 180 SEASRADLHRRRATADAIVVGTGTVLADNPTLTARLANGALADRQPLRVVVGMR-EIPLE 238

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
           + ++       VI                           D  ++L  L  R  T +L+E
Sbjct: 239 ANVLNDDSPTMVI------------------------RTHDPMEVLKALADR--TDVLLE 272

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR-----DYFGS 348
           GG  +A +F+ +  ++ I+ Y + I++G  G  + +++  +      +R      D  GS
Sbjct: 273 GGPTLAGAFLRAGTINRILAYVAPILLG--GPVTAVDDVGVPNIARALRWQFDGIDRAGS 330

Query: 349 DVCLEYI 355
           D+ +  +
Sbjct: 331 DLVISLV 337


>gi|311739500|ref|ZP_07713335.1| riboflavin biosynthesis protein RibD [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305316|gb|EFQ81384.1| riboflavin biosynthesis protein RibD [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 340

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 123/351 (35%), Positives = 179/351 (50%), Gaps = 33/351 (9%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGAT 71
            A+       G TS NP V  +IV   G ++G G T   G  HAEV AL EAG++ARGAT
Sbjct: 16  RAMAAGAEVRGTTSPNPPVGAVIVSPAGEIVGVGATQPVGGAHAEVMALREAGDKARGAT 75

Query: 72  AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
           A VTLEPC+H GR+ PCAQ +I+ G+ RV     DP  + +G G + L++ G+ V ++ +
Sbjct: 76  AVVTLEPCAHTGRTGPCAQALIDAGVARVYYLHADPTPQAAG-GAEVLARAGVDVAKLEK 134

Query: 132 SEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
                  L  +L     +R H+TLK A + D     A   S  ITG  +++ VH  RA  
Sbjct: 135 PPHAEDALVPWLFAVRTQRPHVTLKFAQTLDGFTAAADGTSQWITGEAARDWVHADRAHR 194

Query: 191 DAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           DAI+VG GT LAD+P LT RL    L+ H P R+++    K  L+S              
Sbjct: 195 DAIVVGTGTALADNPSLTARLSDGSLRAHQPRRVVI---GKRDLES-------------A 238

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
            +    +  L + + +          +++ L  L   G   +LVEGGA +A SF+ + LV
Sbjct: 239 GDAASHLRELGYEQYD---------SIEEALYELYATGARDVLVEGGAGLASSFLKADLV 289

Query: 309 DSIILYRSQIVIGEGG--IPSPLEEGYLEK-NFMCVRRDYFGSDVCLEYIG 356
           D+I  Y + +++GEG   +  P+ +   E   F  V     G DV +EY+ 
Sbjct: 290 DAISAYIAPLLLGEGRGVLAHPVTQTLAEATRFRRVGMKALGDDVLIEYVR 340


>gi|317504450|ref|ZP_07962429.1| riboflavin biosynthesis protein RibD [Prevotella salivae DSM 15606]
 gi|315664438|gb|EFV04126.1| riboflavin biosynthesis protein RibD [Prevotella salivae DSM 15606]
          Length = 318

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 102/326 (31%), Positives = 146/326 (44%), Gaps = 40/326 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
             +M   L+ +         NP V  +IV    +IG G     G  HAEV A      E 
Sbjct: 4   EYYMKRCLQLAENGRQNAKPNPMVGAVIVARNRIIGEGYHVRFGEEHAEVNAFASVKPED 63

Query: 67  ---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
                 AT YV+LEPCSHYG++PPCA  II  GI+R V    DP  +V GRG+Q +   G
Sbjct: 64  EMLLNEATIYVSLEPCSHYGKTPPCADLIISKGIKRCVCGCVDPFAKVQGRGIQRMRDAG 123

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I ++  +ME E     H ++T   + R +I LK A + +  I     G + ++   ++  
Sbjct: 124 IEVIVGVMEKECLALNHRFITFNAKHRPYILLKWAQTLNGFISRK-GGPLQLSTPKTQML 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LRA++DAILVG  T L+D P L  R       +P RI+L P                
Sbjct: 183 VHQLRAENDAILVGHTTFLSDHPRLDVR--QWSGQNPERIVLSPTMS------------- 227

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
                         A   R  N  +       + K++  L      SL+VEGG     +F
Sbjct: 228 --------------AQNARPSNWTVAAT----IDKVIAHLYATKKQSLVVEGGRMTLQAF 269

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSP 328
           I+  L D I +  + ++I   G+P+P
Sbjct: 270 IDRGLWDEIRIETAPVLI-TDGVPAP 294


>gi|229493689|ref|ZP_04387474.1| riboflavin biosynthesis protein RibD [Rhodococcus erythropolis
           SK121]
 gi|229319650|gb|EEN85486.1| riboflavin biosynthesis protein RibD [Rhodococcus erythropolis
           SK121]
          Length = 350

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 112/346 (32%), Positives = 167/346 (48%), Gaps = 34/346 (9%)

Query: 20  WHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEP 78
              G TS NP V  +I+  DG + G G+T   G PHAEV AL+EAG+ ARG TA VTLEP
Sbjct: 25  SARGFTSPNPPVGAVILAADGTIAGVGMTQPPGGPHAEVVALDEAGDAARGGTAVVTLEP 84

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI-F 137
           C+H GR+ PC+Q +I+ G+  VV  V DP+   SG     +     +   +   E +   
Sbjct: 85  CNHQGRTGPCSQALIDAGVSAVVYAVGDPNPEASGGAATLMRAGISVTAGLRAPEVEAGP 144

Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
           L A+L +Q   R HIT K A S D         S  ITG  ++ +VH  RAQ DAI+VG 
Sbjct: 145 LRAWLHKQRTGRPHITWKYAASLDGRSAAEDGTSQWITGPQARARVHAQRAQIDAIVVGT 204

Query: 198 GTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
           GTV ADDP LT R     L  H P+R+++    ++   + I+     AP ++        
Sbjct: 205 GTVFADDPWLTARQPTGELAAHQPVRVVVGKR-EIPSTASILDD--TAPTLV-------- 253

Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
                          +  ++ +++  L     T +L+EGG  +A +F+ +  VD I  Y 
Sbjct: 254 --------------LNTDNVDEVVEALGEY--TDVLLEGGPRLAGAFLAAGYVDVIEAYI 297

Query: 316 SQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           + I++G G    + + +        F        G D+ L  + ++
Sbjct: 298 APILLGAGASALVDAGVHTITDAHRFRLESAVTIGPDILLSLVPES 343


>gi|326773583|ref|ZP_08232866.1| riboflavin biosynthesis protein RibD [Actinomyces viscosus C505]
 gi|326636813|gb|EGE37716.1| riboflavin biosynthesis protein RibD [Actinomyces viscosus C505]
          Length = 362

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 98/333 (29%), Positives = 147/333 (44%), Gaps = 36/333 (10%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQAL 60
             ++     M  ALR +         NP V C+I+  DG V+  G     G  HAEV AL
Sbjct: 3   SFTTVQTAAMQRALRAAASPDTPPGPNPRVGCVILSSDGDVLAEGHHRGAGSAHAEVDAL 62

Query: 61  EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
                 G  ARGAT  VTLEPC+H GR+ PC Q +++ G+  V+   DDP    +G G  
Sbjct: 63  ANLAATGASARGATVLVTLEPCNHQGRTGPCVQALLDAGVAEVIYAQDDP-TEQAGGGAA 121

Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
            L   G+ +   +   E       +L      R  +T K+A + D  I  A   S  IT 
Sbjct: 122 TLEAGGVRVRRGLCAQEAARLNRPWLLAVTRGRPMVTWKLAATLDGRIAAADGTSQWITP 181

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH----SPMRIILDPHFKLSL 232
             +++  H LR Q DAI+VG GT LADDP LT R    Q       P+R+++     L  
Sbjct: 182 VAARHDAHRLRRQCDAIMVGTGTALADDPALTVRDEAGQPAPAHLQPLRVVVGSR-SLPP 240

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
            ++++                            + +     D + +L  L  R +  +L+
Sbjct: 241 TARVLADD-------------------------HYLLLPDHDPRAVLAALAEREIRHVLL 275

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           EGG  +A +F+ + LVD ++ Y +  ++G G  
Sbjct: 276 EGGPTLATAFLRAGLVDRVVAYTAPALLGAGSA 308


>gi|302517924|ref|ZP_07270266.1| riboflavin biosynthesis protein RibD [Streptomyces sp. SPB78]
 gi|302426819|gb|EFK98634.1| riboflavin biosynthesis protein RibD [Streptomyces sp. SPB78]
          Length = 364

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 116/352 (32%), Positives = 169/352 (48%), Gaps = 12/352 (3%)

Query: 12  SAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
             A+  +   +G T  NP V C+++   G V G G     G PHAE+ AL  AGE ARG 
Sbjct: 11  REAIALAARGLGRTRPNPVVGCVVLDASGEVAGSGWHQRAGGPHAEIHALRAAGERARGG 70

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           TA VTLEPC H GR+ PC++ +IE G+RRVV  V DP  + +G      +    I   ++
Sbjct: 71  TALVTLEPCDHTGRTGPCSRALIEAGVRRVVHAVADPTDQATGGADTQRAAGVDIEHGLL 130

Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
           E E      A+LT     R H+T K A S D     A   S  IT   ++  VH LRA  
Sbjct: 131 EREAADVNAAWLTAARLGRPHVTWKYAASLDGRTAAADGTSRWITSPEARADVHRLRATC 190

Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTALLAPVIIVT 249
           DA+LVG GT   DDP L  R        P+R++LD     +   ++++  A  AP ++  
Sbjct: 191 DAVLVGSGTARTDDPHLAVR-GIPGAPQPLRVVLDTEGTAVRGGARVLDDA--APTLVAL 247

Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
            +D P  A       +        DL  LL  L  R V  +L+EGGA +A +F+ +   D
Sbjct: 248 ADDAPAPAHGAELLRLPRAARGGLDLTALLAALYARDVRGILLEGGARLAGAFVAAGYTD 307

Query: 310 SIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356
            ++ Y + +++G G  P+ L +  +      +R D       G D+ +  + 
Sbjct: 308 RVVGYLAPVLLGAG--PAALTDAGIPTLTAALRLDVRDSTRLGPDLRITAVP 357


>gi|228469568|ref|ZP_04054561.1| riboflavin biosynthesis protein RibD [Porphyromonas uenonis 60-3]
 gi|228308918|gb|EEK17593.1| riboflavin biosynthesis protein RibD [Porphyromonas uenonis 60-3]
          Length = 338

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 111/335 (33%), Positives = 167/335 (49%), Gaps = 15/335 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D  +M   L+ +    G TS NP V  +IV    +IG G   Y G PHAEV A    
Sbjct: 7   TTPDEIYMQRCLQLAALAQGRTSPNPMVGSVIVYKDKIIGEGYHHYAGAPHAEVMAWRSV 66

Query: 64  GEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
            EE RG    AT YV+LEPC+HYG++PPCA+ I      RVVV + DP  +V GRG+  L
Sbjct: 67  PEELRGLVGEATWYVSLEPCAHYGKTPPCAELIAGLRPARVVVAMLDPFAKVDGRGVARL 126

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP----I 174
            + GI +    +E         +L  Q   R ++TLK A S D+ I      +       
Sbjct: 127 REAGIEVSIGCLEQAAIALNRHFLVAQTLGRPYVTLKWAESADHYIDRLRHDASEAPYIF 186

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS-LD 233
           +  + +  VH LR   DAILVG  T   DDP LT R        P+R +L  H +L   +
Sbjct: 187 SSPLRQRSVHRLRGLHDAILVGHHTAELDDPLLTNRSG--CGGQPIR-LLWCHSRLPRPE 243

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
            ++++ A    +I++       +       +++ +      ++ LLT+L  +G+ SLLVE
Sbjct: 244 LRMLQDATARTIILLPPTLMAQVPDGQYPPHVSCLATTGE-VRDLLTLLRSQGIESLLVE 302

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
           GGA V   F++S L D + +  + + +   G+P+P
Sbjct: 303 GGAQVLQRFLDSGLYDELNVEHAPVEL-HDGVPAP 336


>gi|294010277|ref|YP_003543737.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sphingobium
           japonicum UT26S]
 gi|292673607|dbj|BAI95125.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sphingobium
           japonicum UT26S]
          Length = 317

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 135/352 (38%), Positives = 181/352 (51%), Gaps = 45/352 (12%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+AA+  S+   GL++ NP+V CLIVKDG V+GRG T  GG PHAE QAL+EA + ARGA
Sbjct: 1   MAAAIALSQRGRGLSTPNPNVGCLIVKDGHVVGRGWTQRGGRPHAEAQALDEALDRARGA 60

Query: 71  TAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128
           TAYVTLEPC H   R P CA  +   G+RRVV+ + DPD R  G+G  WL Q G+ VD  
Sbjct: 61  TAYVTLEPCFHLSPRGPRCADRMARAGVRRVVIALRDPDPRTDGQGAAWLRQHGVAVDMG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +M  E    +  ++ RQ   R  +TLK+ +S D  I +A   S  ITG  ++   H+ RA
Sbjct: 121 LMAGEAAAAMRGFVLRQTLGRPAVTLKLGLSLDGRIALADGSSRWITGPEARAHAHMERA 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DAILVG GT+ AD P L  RL GL++ SP R++L        D+      + AP    
Sbjct: 181 RHDAILVGGGTLRADAPRLDVRLLGLEDRSPRRVLLSHG-----DAPGGWETIAAP---- 231

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
                                    D+  L        V  LLVEGGA  A +F+ + LV
Sbjct: 232 ------------------------EDIAALP------QVDHLLVEGGAQAAAAFLRADLV 261

Query: 309 DSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
           D ++LYR+ I+IG G    G     +       +        G+D    Y+ 
Sbjct: 262 DRLLLYRAPILIGAGLAGVGDIGLTDLAGAHGRWRLDDERRLGNDRLEVYLR 313


>gi|255325040|ref|ZP_05366146.1| riboflavin biosynthesis protein RibD [Corynebacterium
           tuberculostearicum SK141]
 gi|255297605|gb|EET76916.1| riboflavin biosynthesis protein RibD [Corynebacterium
           tuberculostearicum SK141]
          Length = 340

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 123/351 (35%), Positives = 178/351 (50%), Gaps = 33/351 (9%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGAT 71
            A+       G TS NP V  +IV   G ++G G T   G  HAEV AL EAG++ARGAT
Sbjct: 16  RAMAAGAEVRGTTSPNPPVGAVIVSPAGEIVGVGATQPVGGAHAEVMALREAGDKARGAT 75

Query: 72  AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
           A VTLEPC+H GR+ PCAQ +I+ G+ RV     DP  + +G G + L+  G+ V ++ +
Sbjct: 76  AVVTLEPCAHTGRTGPCAQALIDAGVARVYYLHADPTPQAAG-GAEVLAGAGVDVAKLEK 134

Query: 132 SEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
                  L  +L     +R H+TLK A + D     A   S  ITG  +++ VH  RA  
Sbjct: 135 PPHAEDALVPWLFAVRTQRPHVTLKFAQTLDGFTAAADGTSQWITGEAARDWVHADRAHR 194

Query: 191 DAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           DAI+VG GT LAD+P LT RL    L+ H P R+++    K  L+S              
Sbjct: 195 DAIVVGTGTALADNPSLTARLSDGSLRAHQPRRVVI---GKRDLES-------------A 238

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
            +    +  L + + +          +++ L  L   G   +LVEGGA +A SF+ + LV
Sbjct: 239 GDAASHLRELGYEQYD---------SIEEALYELYATGARDVLVEGGAGLASSFLKADLV 289

Query: 309 DSIILYRSQIVIGEGG--IPSPLEEGYLEK-NFMCVRRDYFGSDVCLEYIG 356
           D+I  Y + +++GEG   +  P+ +   E   F  V     G DV +EY+ 
Sbjct: 290 DAISAYIAPLLLGEGRGVLAHPVTQTLAEATRFRRVGMKALGDDVLIEYVR 340


>gi|119716673|ref|YP_923638.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Nocardioides sp. JS614]
 gi|119537334|gb|ABL81951.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Nocardioides sp. JS614]
          Length = 345

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 93/319 (29%), Positives = 139/319 (43%), Gaps = 26/319 (8%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  AL  +         NP V C+++  DG  +  G     G  HAE  AL  AG  ARG
Sbjct: 1   MRRALELAAAPGVPLGPNPRVGCVLLDEDGRTVAEGHHRGAGTAHAEADALARAGVRARG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           ATA VTLEPC+H GR+ PCAQ +I  G+RRVV    DP+   +  G   L   G+ +   
Sbjct: 61  ATAVVTLEPCNHTGRTGPCAQALIGAGVRRVVFAQPDPNP-AAAGGADTLRAAGVDVESG 119

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++  E  +    +       R  +T K A + D     A   S  ++   ++   H LRA
Sbjct: 120 LLHVESGLLNRFWAFGLAHGRPFVTWKFATTLDGRSAAADGTSRWVSSRAARLDTHRLRA 179

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           + D +LVG  T+  DDP LT R    +  EH P+R ++     L    ++          
Sbjct: 180 RCDVMLVGTNTIEVDDPLLTVRDEHDRPLEHQPLRAVMGER-DLDPGRRVFDQRPA---- 234

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
                                ++   RD +K L  L       + +EGG  +A +F+ + 
Sbjct: 235 ----------------NGAESVHLRTRDPEKALAELAALDRQHVFLEGGPTLAAAFLKAG 278

Query: 307 LVDSIILYRSQIVIGEGGI 325
           LVD I+ Y + +++G G  
Sbjct: 279 LVDEIVAYVAPMLLGSGRA 297


>gi|25028272|ref|NP_738326.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Corynebacterium efficiens YS-314]
 gi|23493556|dbj|BAC18526.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Corynebacterium efficiens YS-314]
          Length = 328

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 109/356 (30%), Positives = 154/356 (43%), Gaps = 37/356 (10%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
              +  A+  S   VG TS NP V  +I+  DG + G G T   G  HAEV AL  AG  
Sbjct: 4   EEALQLAIEASEEVVGTTSPNPPVGAVILDADGELAGIGATQPPGGAHAEVMALAAAGPR 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARG TA VTLEPC+H GR+ PC+Q +I+ GI RV     DP  + +G G   L Q G+  
Sbjct: 64  ARGGTAVVTLEPCNHTGRTGPCSQALIDAGIARVFYANPDPFPQAAG-GADHLRQAGVDT 122

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +        L  +L      R HITLK A + D         S  ITG  ++  VH  
Sbjct: 123 HLLGLP--VPTLSPWLRATKLGRPHITLKFAGTLDGFAAATDGTSQWITGETARAHVHAD 180

Query: 187 RAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           R + DAI+VG GT L D+P LT R   GL +H P R+++     +   S + +       
Sbjct: 181 RTRRDAIIVGTGTALTDNPSLTARGPAGLYDHQPRRVVIGRRP-VPAGSNLDRLGFE--- 236

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
                                        + + L  L   G   +L+EGG  +A + + +
Sbjct: 237 -------------------------QYPGIDEALAALWESGCRDVLLEGGPTLAGAMLRA 271

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK---NFMCVRRDYFGSDVCLEYIGKN 358
            L+D+I  Y +  ++G G      + G        F        G DV ++   K+
Sbjct: 272 GLIDAIRAYVAPAILGAGRSVLSWDGGTTISDITRFTTTAVHRLGDDVLIDMTRKD 327


>gi|297745271|emb|CBI40351.3| unnamed protein product [Vitis vinifera]
          Length = 348

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 98/359 (27%), Positives = 159/359 (44%), Gaps = 24/359 (6%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M   +  +R  +G TS NP V C+IVKDG V+G G     G PH EV AL +AG+ A  A
Sbjct: 1   MRRCVELARKAIGCTSPNPMVGCVIVKDGKVVGEGFHPKAGQPHGEVFALRDAGDLAENA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           TAYV+LEPC+HYGR+PPC + +I+  +++VV+ + DP+  V+ +G+  L   GI V   +
Sbjct: 61  TAYVSLEPCNHYGRTPPCTEALIKAKVKKVVIGMVDPNPIVASKGVDRLRDAGIEVTVAV 120

Query: 131 ESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           E E  K    AY+ + +  +  +TL+ ++S +  I       V   G      V     +
Sbjct: 121 EEELCKKLNEAYIHQMLTGKPFVTLRYSLSINGHILDQLGEGVEEAGGYYSQLVQ----E 176

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            DAI++   TV         +  G     P+ I++           I  T   + VII  
Sbjct: 177 YDAIILSPTTVTEKFSFPASQEPGAN--QPLHILIAKSPISPNQIPIPHTEATSKVIIFA 234

Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF------- 302
           +N+  V      +K I  +  D  +L  +L     +G+ S+L++    +  +F       
Sbjct: 235 DNETAVEPEMV-QKGIETVVLDQINLNAVLEYCKRQGLCSILLD----LRGNFGYFEDLL 289

Query: 303 ---INSRLVDSIILYRSQIV--IGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
              +   L+  +++          E G+P  L+          +        V LE   
Sbjct: 290 KQSLEENLLQKVVVEVLPFWSTNEEEGLPLALKNLRKGIRLKNITSRNSNDSVVLEGYP 348


>gi|242347654|gb|ACS92631.1| conserved hypothetical protein [Triticum aestivum]
          Length = 396

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 102/357 (28%), Positives = 165/357 (46%), Gaps = 21/357 (5%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             DA +M   +  +R   G TS NP V C+IV++G V+G G     G PHAEV AL +AG
Sbjct: 50  DMDAHYMRRCVDLARTAAGHTSPNPMVGCVIVREGEVVGEGFHPKAGQPHAEVFALRDAG 109

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           + A  ATAYV+LEPC+HYGR+PPC + +I+  I+ VVV + DP+  V+ +G++ L   GI
Sbjct: 110 DLAENATAYVSLEPCNHYGRTPPCTEALIKAKIKEVVVGMTDPNPIVASKGIEKLRNAGI 169

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISKNQ 182
            +   + E+       AY+ R +  ++  TL+  +S +  +I   G G+    G+ S   
Sbjct: 170 DVRVGVEEALCLRLNEAYIHRMLTGKAFATLRTTLSMNGIVINQIGSGADQPGGYYS--- 226

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
              L  + D +++      A    ++          P+ II+       L    +     
Sbjct: 227 --QLAKEYDGVVISSDMAKATTLPIS---QEAGAKQPLYIIIAQGEGSKLHIPFLDEESA 281

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV---EGGAAVA 299
           +  I++   D PV   A     +++   D  +L  +L IL  RG+ S+LV   + G A+A
Sbjct: 282 SNAIVLA--DSPV---AVEPSGVSVSVLDEMNLDSILRILADRGLCSVLVDFRDAGGALA 336

Query: 300 H---SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
                F   +LV  +++  S + +   G       G        V        + LE
Sbjct: 337 SLLKDFQEDKLVQKVLVELSPVWMVSPGPSDLAFGGSQSFALKNVEHKEVNGTLLLE 393


>gi|260204674|ref|ZP_05772165.1| putative riboflavin biosynthesis protein [Mycobacterium
           tuberculosis K85]
 gi|289574078|ref|ZP_06454305.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           K85]
 gi|289538509|gb|EFD43087.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           K85]
          Length = 339

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 113/364 (31%), Positives = 168/364 (46%), Gaps = 40/364 (10%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
           V S D   M  A+  S    G T  NP V  +IV  +G ++G G T   G  HAEV AL 
Sbjct: 6   VKSIDEA-MGLAIEHSYQVKGTTYPNPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALR 64

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG  A GA   VT+EPC+HYG++PPC   +IE  +  VV  V DP+  ++G G   LS 
Sbjct: 65  RAGGLATGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADPN-GIAGGGAGRLSA 123

Query: 122 KGIIVDRMMESEGKI--FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
            G+ V   + +E      L  +L +Q     H+T K A S D     A   S  I+   +
Sbjct: 124 AGLQVRSGVLAEQVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAA 183

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKII 237
           +  +H  RA +DAILVG GTVLADDP LT RL    L    P+R+++     +  +++++
Sbjct: 184 RLDLHRRRAIADAILVGTGTVLADDPALTARLADGSLAPQQPLRVVVGKR-DILPEARVL 242

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                                         +     +  ++L  L  R  T +L+EGG  
Sbjct: 243 NDEART------------------------MMIRTHEPMEVLRALSDR--TDVLLEGGPT 276

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           +A +F+ +  ++ I+ Y + I++G    P    +     N     R  F S   +E +G 
Sbjct: 277 LAGAFLRAGAINRILAYVAPILLGG---PVTAVDDVGVSNITNALRWQFDS---VEKVGP 330

Query: 358 NLCL 361
           +L L
Sbjct: 331 DLLL 334


>gi|34764917|ref|ZP_00145265.1| DIAMINOHYDROXYPHOSPHORIBOSYLAMINOPYRIMIDINE DEAMINASE;
           5-AMINO-6-(5-PHOSPHORIBOSYLAMINO)URACIL REDUCTASE
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27885744|gb|EAA23138.1| DIAMINOHYDROXYPHOSPHORIBOSYLAMINOPYRIMIDINE DEAMINASE;
           5-AMINO-6-(5-PHOSPHORIBOSYLAMINO)URACIL REDUCTASE
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 223

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 87/205 (42%), Positives = 122/205 (59%), Gaps = 1/205 (0%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D ++M+ A+  ++  +G  + NP V  +IVKDG +IG G     G PHAEV AL EAGE
Sbjct: 5   LDEKYMARAIELAKRGIGGVNPNPLVGAVIVKDGKIIGEGWHKKFGGPHAEVWALNEAGE 64

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            A GAT YVTLEPCSH G++PPCA+ I+E GI+R VV   DP+  V+G+G++ +   GI 
Sbjct: 65  NAEGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVVACIDPNPLVAGKGIKIMEDAGIE 124

Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           V+  ++E E K     +L     K  ++ LK  ++ D  I      S  IT  I++ +V 
Sbjct: 125 VELGVLEKEAKDVNKIFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKVQ 184

Query: 185 LLRAQSDAILVGIGTVLADDPELTC 209
            LR +  AI+VGI TVL D+P L  
Sbjct: 185 FLRTKFMAIMVGINTVLKDNPSLDS 209


>gi|170783175|ref|YP_001711509.1| riboflavin biosynthesis protein RibD [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169157745|emb|CAQ02947.1| riboflavin biosynthesis protein RibD [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 355

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 107/353 (30%), Positives = 151/353 (42%), Gaps = 35/353 (9%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE--AG 64
            R M   L  +         NP V C+I+   G VI  G     G  HAEV AL +  AG
Sbjct: 21  ERAMRRGLELAAEGPAW-GPNPRVGCVILDASGRVIAEGRHRGAGSAHAEVDALRQLPAG 79

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
             ARGATA VTLEPC+H GR+ PCA  ++E G+ RV   V DP    SG   +  +    
Sbjct: 80  -GARGATAVVTLEPCNHTGRTGPCAAALVEAGVARVAYAVADPGAESSGGAARLRAAGVE 138

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V  ++  E   FL  +L      R  +T K A S D  I  A   S  ITG  ++  VH
Sbjct: 139 VVPGVLADEAAAFLQVWLGSASLGRPFVTAKWASSLDGRIAAADGSSRWITGTAAREDVH 198

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGL--QEHSPMRIILDPHFKLSLDSKIIKTALL 242
             RA++DAILVG GTVLADDP LT R        H P  ++L     +  D+ +      
Sbjct: 199 RRRAEADAILVGTGTVLADDPALTARRPDGIPYPHQPAPVVLGDRA-IPDDAAV------ 251

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
                              +    +I     D    L  L  RG+  + VEGG  +  + 
Sbjct: 252 ------------------HRHPRRLIRLPGHDPAAALDELGNRGIRHVFVEGGPTIVSAL 293

Query: 303 INSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCL 352
           + + LVD ++ Y + +++G     +    +           +     G D+ +
Sbjct: 294 LAAGLVDEVVAYLAPVLLGGPRTATGDLGVPSMPDAHRLTLISTTRLGDDLLV 346


>gi|118473539|ref|YP_887383.1| riboflavin biosynthesis protein RibD [Mycobacterium smegmatis str.
           MC2 155]
 gi|118174826|gb|ABK75722.1| riboflavin biosynthesis protein RibD [Mycobacterium smegmatis str.
           MC2 155]
          Length = 335

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 112/359 (31%), Positives = 164/359 (45%), Gaps = 38/359 (10%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
              M  A+  +    G T  NP V  +I+ +DG V G G T   G PHAEV AL  A E 
Sbjct: 6   EAAMRLAIDQAEQVKGATYPNPPVGAVILDRDGQVAGVGGTQPTGGPHAEVMALRAAAER 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A G TA VTLEPC+H+GR+PPC   ++  GI RVV  V DP+   +G   +  S    + 
Sbjct: 66  AEGGTAVVTLEPCNHHGRTPPCVDGLVAAGISRVVYAVADPNPVAAGGSARMASSGIEVT 125

Query: 127 DRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
             ++  E     L  +L +Q     H+T K A S D     A   S  IT   ++  VH 
Sbjct: 126 SGVLSDEVAGGPLREWLHKQRTGLPHVTWKFATSVDGRSAAADGSSQWITSAAARADVHR 185

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
            RA +DAI+VG GTV  DDP LT RL    L +  P+R+++    ++S D+ ++      
Sbjct: 186 RRAAADAIVVGTGTVFVDDPSLTARLPDGTLADRQPLRVVVGRR-EVSSDANVLNDDSRT 244

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            VI                           D  ++L  L  R  T +++EGG  +A +F+
Sbjct: 245 MVI------------------------RTHDPHEVLRALSDR--TDIMLEGGPTLAGAFL 278

Query: 304 NSRLVDSIILYRSQIVIGE-----GGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
            + +V+ I+ Y + I++G        +  P         F CV+    G DV +  +  
Sbjct: 279 RAGVVNRILAYVAPILLGGPITAVDDVGVPSIAHAQRWRFDCVQT--IGPDVLMSLVPN 335


>gi|227504400|ref|ZP_03934449.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Corynebacterium striatum ATCC 6940]
 gi|227199048|gb|EEI79096.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Corynebacterium striatum ATCC 6940]
          Length = 344

 Score =  259 bits (661), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 115/354 (32%), Positives = 170/354 (48%), Gaps = 35/354 (9%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGAT 71
            A+   +   G TS NP V  +I+  +G ++G G T   G PHAEV AL+EAG  ARG  
Sbjct: 11  RAMEAGQSVRGTTSPNPPVGAVILDAEGNLVGTGATQPVGGPHAEVMALQEAGSSARGGI 70

Query: 72  AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
           A VTLEPC+H GR+ PCA+ +I   I +V     DP+  V+  G Q L   GI V ++  
Sbjct: 71  AVVTLEPCNHTGRTGPCAEALIAADISQVYFLHPDPN-GVAAGGAQTLRAAGIEVAQIEA 129

Query: 132 SEG---KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
                    L  +LT     R H+TLK A + D     +   S  ITG  ++  VH+ RA
Sbjct: 130 PAELPVSDALIPWLTSLRLGRPHVTLKFAQTLDGFTAASDGTSQWITGEHAREWVHVDRA 189

Query: 189 QSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           + DAI++G GT LAD+P LT R     L+E  P R+++                      
Sbjct: 190 RRDAIIIGTGTALADNPSLTARFPDGTLREQQPRRVVIGQRN------------------ 231

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
                D    +   R+      Y    ++   L  L   G   +LVEGGA +A +F+N+ 
Sbjct: 232 ---LEDAGAASSHLRELG----YDQFANIDDALISLYEAGARDVLVEGGAGLASAFLNAG 284

Query: 307 LVDSIILYRSQIVIGEGG--IPSPLEEGYLE-KNFMCVRRDYFGSDVCLEYIGK 357
            VD++  Y + +++GEG   +  P+ +   + + F  V     G DV +EY+ +
Sbjct: 285 YVDAVQAYIAPLLLGEGRGVLAHPVAQTLQDARRFQRVGTTVLGDDVLIEYVRR 338


>gi|15608547|ref|NP_215925.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Mycobacterium tuberculosis H37Rv]
 gi|15840867|ref|NP_335904.1| riboflavin-specific deaminase [Mycobacterium tuberculosis CDC1551]
 gi|148661200|ref|YP_001282723.1| riboflavin-specific deaminase [Mycobacterium tuberculosis H37Ra]
 gi|148822629|ref|YP_001287383.1| bifunctional riboflavin biosynthesis protein ribG:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Mycobacterium tuberculosis F11]
 gi|167968448|ref|ZP_02550725.1| bifunctional riboflavin biosynthesis protein ribG:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           [Mycobacterium tuberculosis H37Ra]
 gi|215403256|ref|ZP_03415437.1| bifunctional riboflavin biosynthesis protein ribG:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           [Mycobacterium tuberculosis 02_1987]
 gi|215411054|ref|ZP_03419862.1| bifunctional riboflavin biosynthesis protein ribG:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215445596|ref|ZP_03432348.1| bifunctional riboflavin biosynthesis protein ribG:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           [Mycobacterium tuberculosis T85]
 gi|218753118|ref|ZP_03531914.1| bifunctional riboflavin biosynthesis protein ribG:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           [Mycobacterium tuberculosis GM 1503]
 gi|253799541|ref|YP_003032542.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           KZN 1435]
 gi|254231651|ref|ZP_04924978.1| bifunctional riboflavin biosynthesis protein ribG :
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Mycobacterium tuberculosis C]
 gi|254364292|ref|ZP_04980338.1| bifunctional riboflavin biosynthesis protein ribG :
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254550423|ref|ZP_05140870.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289554800|ref|ZP_06444010.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           KZN 605]
 gi|289745160|ref|ZP_06504538.1| riboflavin-specific deaminase [Mycobacterium tuberculosis 02_1987]
 gi|289757515|ref|ZP_06516893.1| riboflavin-specific deaminase [Mycobacterium tuberculosis T85]
 gi|289761568|ref|ZP_06520946.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Mycobacterium tuberculosis GM 1503]
 gi|294994971|ref|ZP_06800662.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           210]
 gi|297633965|ref|ZP_06951745.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           KZN 4207]
 gi|297730954|ref|ZP_06960072.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           KZN R506]
 gi|298524915|ref|ZP_07012324.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Mycobacterium tuberculosis 94_M4241A]
 gi|313658287|ref|ZP_07815167.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           KZN V2475]
 gi|2829534|sp|P71677|RIBD_MYCTU RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
           RecName:
           Full=Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase; Includes: RecName:
           Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|1542917|emb|CAB02188.1| PROBABLE BIFUNCTIONAL riboflavin biosynthesis protein RIBG :
           Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (Riboflavin-specific deaminase) +
           5-amino-6-(5-phosphoribosylamino) uracil reductase (HTP
           reductase) [Mycobacterium tuberculosis H37Rv]
 gi|13881067|gb|AAK45718.1| riboflavin-specific deaminase [Mycobacterium tuberculosis CDC1551]
 gi|124600710|gb|EAY59720.1| bifunctional riboflavin biosynthesis protein ribG :
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Mycobacterium tuberculosis C]
 gi|134149806|gb|EBA41851.1| bifunctional riboflavin biosynthesis protein ribG :
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148505352|gb|ABQ73161.1| riboflavin-specific deaminase [Mycobacterium tuberculosis H37Ra]
 gi|148721156|gb|ABR05781.1| bifunctional riboflavin biosynthesis protein ribG:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Mycobacterium tuberculosis F11]
 gi|253321044|gb|ACT25647.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           KZN 1435]
 gi|289439432|gb|EFD21925.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           KZN 605]
 gi|289685688|gb|EFD53176.1| riboflavin-specific deaminase [Mycobacterium tuberculosis 02_1987]
 gi|289709074|gb|EFD73090.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Mycobacterium tuberculosis GM 1503]
 gi|289713079|gb|EFD77091.1| riboflavin-specific deaminase [Mycobacterium tuberculosis T85]
 gi|298494709|gb|EFI30003.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Mycobacterium tuberculosis 94_M4241A]
 gi|323720073|gb|EGB29179.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           CDC1551A]
 gi|326903030|gb|EGE49963.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           W-148]
 gi|328459289|gb|AEB04712.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           KZN 4207]
          Length = 339

 Score =  259 bits (661), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 112/364 (30%), Positives = 167/364 (45%), Gaps = 40/364 (10%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
           V S D   M  A+  S    G T   P V  +IV  +G ++G G T   G  HAEV AL 
Sbjct: 6   VKSIDEA-MGLAIEHSYQVKGTTYPKPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALR 64

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG  A GA   VT+EPC+HYG++PPC   +IE  +  VV  V DP+  ++G G   LS 
Sbjct: 65  RAGGLAAGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADPN-GIAGGGAGRLSA 123

Query: 122 KGIIVDRMMESEGKI--FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
            G+ V   + +E      L  +L +Q     H+T K A S D     A   S  I+   +
Sbjct: 124 AGLQVRSGVLAEQVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAA 183

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKII 237
           +  +H  RA +DAILVG GTVLADDP LT RL    L    P+R+++     +  +++++
Sbjct: 184 RLDLHRRRAIADAILVGTGTVLADDPALTARLADGSLAPQQPLRVVVGKR-DIPPEARVL 242

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                                         +     +  ++L  L  R  T +L+EGG  
Sbjct: 243 NDEART------------------------MMIRTHEPMEVLRALSDR--TDVLLEGGPT 276

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           +A +F+ +  ++ I+ Y + I++G    P    +     N     R  F S   +E +G 
Sbjct: 277 LAGAFLRAGAINRILAYVAPILLGG---PVTAVDDVGVSNITNALRWQFDS---VEKVGP 330

Query: 358 NLCL 361
           +L L
Sbjct: 331 DLLL 334


>gi|308231834|ref|ZP_07663946.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu001]
 gi|308369792|ref|ZP_07419077.2| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu002]
 gi|308370712|ref|ZP_07666996.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu003]
 gi|308371959|ref|ZP_07667277.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu004]
 gi|308373132|ref|ZP_07667517.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu005]
 gi|308374304|ref|ZP_07667756.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu006]
 gi|308375454|ref|ZP_07668025.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu007]
 gi|308376713|ref|ZP_07668330.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu008]
 gi|308377721|ref|ZP_07480168.2| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu009]
 gi|308378931|ref|ZP_07668864.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu010]
 gi|308380068|ref|ZP_07669113.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu011]
 gi|308215903|gb|EFO75302.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu001]
 gi|308326399|gb|EFP15250.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu002]
 gi|308331085|gb|EFP19936.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu003]
 gi|308334898|gb|EFP23749.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu004]
 gi|308338707|gb|EFP27558.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu005]
 gi|308342394|gb|EFP31245.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu006]
 gi|308346232|gb|EFP35083.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu007]
 gi|308350184|gb|EFP39035.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu008]
 gi|308354825|gb|EFP43676.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu009]
 gi|308358776|gb|EFP47627.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu010]
 gi|308362713|gb|EFP51564.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           SUMu011]
          Length = 337

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 112/364 (30%), Positives = 167/364 (45%), Gaps = 40/364 (10%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
           V S D   M  A+  S    G T   P V  +IV  +G ++G G T   G  HAEV AL 
Sbjct: 4   VKSIDEA-MGLAIEHSYQVKGTTYPKPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALR 62

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG  A GA   VT+EPC+HYG++PPC   +IE  +  VV  V DP+  ++G G   LS 
Sbjct: 63  RAGGLAAGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADPN-GIAGGGAGRLSA 121

Query: 122 KGIIVDRMMESEGKI--FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
            G+ V   + +E      L  +L +Q     H+T K A S D     A   S  I+   +
Sbjct: 122 AGLQVRSGVLAEQVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAA 181

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKII 237
           +  +H  RA +DAILVG GTVLADDP LT RL    L    P+R+++     +  +++++
Sbjct: 182 RLDLHRRRAIADAILVGTGTVLADDPALTARLADGSLAPQQPLRVVVGKR-DIPPEARVL 240

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                                         +     +  ++L  L  R  T +L+EGG  
Sbjct: 241 NDEART------------------------MMIRTHEPMEVLRALSDR--TDVLLEGGPT 274

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           +A +F+ +  ++ I+ Y + I++G    P    +     N     R  F S   +E +G 
Sbjct: 275 LAGAFLRAGAINRILAYVAPILLGG---PVTAVDDVGVSNITNALRWQFDS---VEKVGP 328

Query: 358 NLCL 361
           +L L
Sbjct: 329 DLLL 332


>gi|296283379|ref|ZP_06861377.1| riboflavin-specific deaminase/reductase [Citromicrobium
           bathyomarinum JL354]
          Length = 323

 Score =  258 bits (660), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 128/352 (36%), Positives = 171/352 (48%), Gaps = 46/352 (13%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           +  DAR++SAA R S      ++ NP+V C+IV+ G V+GRG T  GG PHAE  ALE A
Sbjct: 5   TPSDARWLSAAARLSLRGRPASAPNPAVGCVIVQAGRVVGRGWTQAGGRPHAEAMALEMA 64

Query: 64  GEEARGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           G+ A GA  Y TLEPC+H   R P C   +IE    RVV+   DPD R +G+G++ L   
Sbjct: 65  GDAATGADVYATLEPCAHQSPRGPACTDRLIEARPARVVIGQIDPDPRTAGQGIERLHAA 124

Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           GI    +        L  YLTR    R H+TLK+A+S D  I +A   S  ITG  ++  
Sbjct: 125 GIDAVLLDCPHSAASLAGYLTRAALGRPHVTLKLAMSLDGCIALADGTSQWITGEAARAH 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH  RA +DAILVG GT  AD P L  R+ GL++ SP R +L       ++       + 
Sbjct: 185 VHSRRALADAILVGGGTWRADSPRLDVRVPGLEDRSPARWVLTSQ---PIEGA---QTIA 238

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           APV I T                                        L VEGGA  A SF
Sbjct: 239 APVDIATIPA-----------------------------------QYLYVEGGAQTAASF 263

Query: 303 INSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDV 350
           + + LVD + +YR+ I+IG+G    G  +  E  +    +  V     G+D 
Sbjct: 264 LEADLVDRLEIYRAPILIGDGLRALGGLNLAELAHAHGRWQPVETRQLGADT 315


>gi|42524894|ref|NP_970274.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bdellovibrio bacteriovorus HD100]
 gi|39577104|emb|CAE78333.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bdellovibrio bacteriovorus HD100]
          Length = 394

 Score =  258 bits (660), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 106/373 (28%), Positives = 181/373 (48%), Gaps = 29/373 (7%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE-AGE 65
              MS A+  +       S NP V  +++   G  +  G   + G PHAEV AL+  + E
Sbjct: 19  EEAMSLAISEAYQGAARVSPNPLVGAVVLDAQGGFLSAGHHEFYGGPHAEVNALKNLSPE 78

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           + +GA A+VTLEPC+H G++P CA+ + +  +++V   + DP+  V+G+G + L Q  I 
Sbjct: 79  QLKGAHAFVTLEPCAHEGKTPSCAKMMAKLPLKKVTFGLIDPNPLVAGQGAEILRQARIE 138

Query: 126 VDRMMES----------EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
            +    +          E +    A+L    +K+  ++LK+A S D  + +    S  IT
Sbjct: 139 AEVFSSANPVLDAKIKTELEEVCEAFLWNFRKKKVFVSLKMASSLDGQVALRSGESQWIT 198

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD-- 233
           G  S+  VH +RA  D ILVG GT+  D+P L  R   + + + + I++D   +L  +  
Sbjct: 199 GPESREYVHYIRACHDGILVGKGTIDFDNPSLNIRHPQITKKNKV-IVVDGEAELLPNFT 257

Query: 234 -SKIIKTALLAPVIIVTENDDPVLALAFRK---KNINIIYCDCR-----DLKKLLTILVG 284
             K+ +      VI     +        R    K+ +++Y   R     DL+ LL  L  
Sbjct: 258 KLKLSEVHASEDVIWCVAEELREKVEKLRGTLVKSPDVVYVKTRVGGDLDLEDLLAQLYQ 317

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS-----PLEEGYLEKNFM 339
           +G+ S++VEGGA  A SF++  LV+ + ++++ I++G GG  S      +     +    
Sbjct: 318 KGLRSVMVEGGAFTASSFVSYHLVNRLYMFQAPIIMGSGGSRSWTESVRISAMTDKIQLK 377

Query: 340 CVRRDYFGSDVCL 352
             R   FG+D  +
Sbjct: 378 NPRYLTFGNDFMI 390


>gi|281421474|ref|ZP_06252473.1| riboflavin biosynthesis protein RibD [Prevotella copri DSM 18205]
 gi|281404546|gb|EFB35226.1| riboflavin biosynthesis protein RibD [Prevotella copri DSM 18205]
          Length = 345

 Score =  258 bits (660), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 99/365 (27%), Positives = 158/365 (43%), Gaps = 46/365 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59
           +     D  FM   L+ ++        NP V  +IV  DG +IG G     G  HAEV A
Sbjct: 17  LSQKEIDEMFMRRCLQLAKNGRENAKPNPMVGAVIVSGDGRIIGEGYHVRCGEGHAEVNA 76

Query: 60  LEEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
                 E       AT YV+LEPCSHYG++PPCA  I+  G++R V    DP  +V GRG
Sbjct: 77  FASVKPEDEHLLSQATIYVSLEPCSHYGKTPPCADLIVRKGVKRCVCGCVDPFAKVQGRG 136

Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           ++ + + GI +   ++E+E       ++T    +R +I LK A + +  +   G   + I
Sbjct: 137 IRKIREAGIEVTVGVLEAECLELNKRFITFNTHQRPYIILKWAQTANGFLD-NGGRGMAI 195

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           +   +K   H LRA++DAIL+G  T   D  +L  R        PMR+++D H       
Sbjct: 196 SSPFTKMLSHKLRAENDAILIGRVTDERDHSQLNVR--DWSGKDPMRLVIDRH------- 246

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
                    P                  + ++        L++++  L    V SL+VEG
Sbjct: 247 --------HPCF----------------EGLDFSRGKTEVLQQIMQYLYNNKVQSLIVEG 282

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG---EGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           GA    +F+++ L D I    ++ ++    E  + S      L  N   +  + +  +V 
Sbjct: 283 GAITHQAFLDAGLWDEIR---AETLLSTSVENSVTSGTPAPMLPHNVRLISHEAYDGNVI 339

Query: 352 LEYIG 356
             Y  
Sbjct: 340 NTYER 344


>gi|326404513|ref|YP_004284595.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Acidiphilium multivorum AIU301]
 gi|325051375|dbj|BAJ81713.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Acidiphilium multivorum AIU301]
          Length = 363

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 140/362 (38%), Positives = 198/362 (54%), Gaps = 10/362 (2%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D   M  AL  +R  +G T+ NP+V C+IV+ G V+GRG TA GG PHAE +AL  AG+
Sbjct: 2   DDLAHMRTALALARRGLGETAPNPTVGCVIVRGGRVVGRGRTAQGGRPHAETEALAAAGD 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            ARGATAYVTLEPC+H+GR+PPCA  ++  GI RVVV + DPD R +G GL  L + G+ 
Sbjct: 62  AARGATAYVTLEPCAHHGRTPPCADALVAAGIARVVVAMTDPDERTNGAGLSRLREAGLE 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V+ +  +E       +     E R  +TLK+A S D  I      S  ITG  ++   H
Sbjct: 122 VVEGIGGAEAAEINAGFCKCIREGRPLVTLKLATSLDGQIATRTGASQWITGAAARQAAH 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR   DA++VG+GTVLADDPELTCRL G +    +R+I+D H ++ LD ++++ A   P
Sbjct: 182 ALRGTHDAVMVGVGTVLADDPELTCRLEGFRSTPVIRLIVDSHLRIPLDGRLVRGAADHP 241

Query: 245 VIIVT-ENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           + IV  +  DP    A       +          DL   L  +   G+T +L EGG  +A
Sbjct: 242 LWIVHRDGADPARRAALLDLGARLFEVPAAPVGIDLAAALAAVGEAGLTRVLAEGGGTLA 301

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
            + I + LVD +  + + +VIG+ GI +     +EE      F  +     G D+   Y 
Sbjct: 302 AALIRADLVDRLEWFTAPVVIGDDGIGAVAGFGVEELGRAARFTRIDASVCGGDIRTRYR 361

Query: 356 GK 357
             
Sbjct: 362 RD 363


>gi|213027853|ref|ZP_03342300.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 320

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 109/321 (33%), Positives = 158/321 (49%), Gaps = 18/321 (5%)

Query: 52  CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
             HAEV AL  AG +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V
Sbjct: 1   GAHAEVHALRMAGAKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQV 60

Query: 112 SGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG 170
           +GRGL  L Q GI +   +M SE +     +L R      ++ LK+  S D    MA   
Sbjct: 61  AGRGLYRLQQAGIAVSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGE 120

Query: 171 SVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSP 219
           S  IT   ++  V  LRAQS AIL    TVLADDP LT R   L               P
Sbjct: 121 SQWITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQP 180

Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279
           +RI++D   +++   +I++       I  T+ D      + R  ++   +    DL  L+
Sbjct: 181 VRIVIDSQNRVTPAHRIVQQPGE-TWIARTQEDSHAWPDSVRTISV-PAHNGHLDLVVLM 238

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLE 335
             L  + + S+ VE G  +A + + + LVD +I+Y +  ++G           LE+    
Sbjct: 239 MQLGRQQINSIWVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADA 298

Query: 336 KNFMCVRRDYFGSDVCLEYIG 356
             F      + G DVCL  + 
Sbjct: 299 PQFTFSEIRHVGPDVCLHMVS 319


>gi|212702196|ref|ZP_03310324.1| hypothetical protein DESPIG_00207 [Desulfovibrio piger ATCC 29098]
 gi|212674401|gb|EEB34884.1| hypothetical protein DESPIG_00207 [Desulfovibrio piger ATCC 29098]
          Length = 380

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 100/376 (26%), Positives = 161/376 (42%), Gaps = 38/376 (10%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
           FM  AL  +         NP+V  ++V+DG V+ RG     G PHAEV+ L +A   G +
Sbjct: 9   FMREALTLAENGRWSACPNPTVGAVLVRDGQVVARGWHHAAGQPHAEVECLRDAQRQGID 68

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
               T  VTLEPC+HYG++PPC++ ++  GI+RVV+ + DP  + +G G + L   G+ V
Sbjct: 69  PAQCTLVVTLEPCNHYGKTPPCSEAVLAAGIKRVVIGLYDPTPKAAG-GAERLRAAGVEV 127

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
              +  +      A      + R ++ LK+A + D  I      S  ++   S+  VH L
Sbjct: 128 IGPVCEQECRDQVADFLAWQQGRPYVILKMAATMDGRIATRTGHSRWVSSEGSRALVHRL 187

Query: 187 RAQSDAILVGIG-----------TVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSL-D 233
           RA       GIG           T  AD+P LT R+ G   E  P+  +L         D
Sbjct: 188 RA-------GIGRAGGAVLVGGGTFRADNPCLTARIPGETVEQQPLACVLTSRLPNPAGD 240

Query: 234 SKIIKTALLAPVIIVTE-NDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGR-G 286
             ++K      V + +        A A R+  + ++        C D   +  +L     
Sbjct: 241 IHLLKERPHQAVFLCSPAAAASTAAHALRQMGVRVLALGPGQRGCPDFPAMFHMLYEELH 300

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE------KNFMC 340
              +L EGG  +A S + +   D  +L+ +  ++G+    +PL +G          +   
Sbjct: 301 CPYVLCEGGGHLALSLLEAGFADEFLLHLAPRILGDNEA-APLFDGRSPLTMAEALDLRV 359

Query: 341 VRRDYFGSDVCLEYIG 356
            R      DV L+   
Sbjct: 360 CRTTLCDGDVHLQLRP 375


>gi|323357080|ref|YP_004223476.1| pyrimidine reductase, riboflavin biosynthesis [Microbacterium
           testaceum StLB037]
 gi|323273451|dbj|BAJ73596.1| pyrimidine reductase, riboflavin biosynthesis [Microbacterium
           testaceum StLB037]
          Length = 343

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 107/358 (29%), Positives = 159/358 (44%), Gaps = 38/358 (10%)

Query: 4   SSFDARFMSAALRFSRWH-VGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
           S+ +   M  AL+ +R    GL   NP V  +I+   G ++  G     G  HAEV AL 
Sbjct: 3   SAVEIDAMRRALQLARRGPRGL---NPQVGAVILSPAGEILAEGYHRGAGTAHAEVDALS 59

Query: 62  E-AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           + A   ARGATA VTLEPC+H GR+ PCA  +IE G+ RVV  +DDP    +  G + L 
Sbjct: 60  QLAPGAARGATAVVTLEPCNHTGRTGPCAVALIEAGVARVVFALDDP-TDAASGGAERLR 118

Query: 121 QKGIIVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             G+ V++  E E    L H ++      R H+ +K A S D         S  ITG  +
Sbjct: 119 AAGVDVEQGPEEESAEALVHDWVALTRTGRPHVVVKWAQSLDGRAAADDGTSQWITGPAA 178

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKII 237
           +  VH  RA +DAI+ G GTV ADDP LT R          P+ +I+             
Sbjct: 179 RRDVHARRATADAIVAGTGTVRADDPALTARDEDGSLLPAQPLPVII------------- 225

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                          +     A R+     ++    DL  +L  L  RG+  + VEGG  
Sbjct: 226 ------------GESETAPDAAVRRHPREPLFFATHDLSAVLADLGERGIQRVFVEGGPT 273

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCL 352
           +A +F+ + L D +++Y + ++IG   +      +      +          G D+ +
Sbjct: 274 LASAFVRADLADELLVYVAPVLIGGSRLALGDVGVPTIADARRLAVASVQNLGDDLLI 331


>gi|91763228|ref|ZP_01265192.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|91717641|gb|EAS84292.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 366

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 120/361 (33%), Positives = 186/361 (51%), Gaps = 10/361 (2%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             S  D  FM  AL  ++   GLT  NPSV C+IVK+  ++  G T + G PHAE  A++
Sbjct: 7   KFSIKDKIFMELALNLAKARHGLTGINPSVGCVIVKNNKILSIGQTGFKGTPHAEFNAIK 66

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            + E   G+  YVTLEPCSHYG++PPC   II+  I+ VV  V+D D +V G+ L+ L  
Sbjct: 67  NSHENIEGSKMYVTLEPCSHYGKTPPCTNIIIKNKIKEVVYGVEDIDKKVKGKTLKILKS 126

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           K I +   +++ +   F   Y   + +   ++T KIA+S++N+I      +  I+   + 
Sbjct: 127 KNILVKKDLLKKQINKFYAPYFFNRKKNLPYVTGKIAISKNNLI--YSKDTKRISDIHTD 184

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              H LR ++D++++   T+  DDP+L CR+ GL + SP RIILD + ++  +S I KTA
Sbjct: 185 KFTHFLRYKNDSLMISSKTLNKDDPKLNCRIKGLSKFSPKRIILDRNLEIKKNSYIFKTA 244

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGA 296
                II   N    + L  +KK I +I      +  D+K +L  L   G  +LLVEGG 
Sbjct: 245 NKDNTIIFYHNAKAEVKLMLKKKGITLIKSKLNKNSFDIKSILMKLYVLGCRNLLVEGGN 304

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGE-GGIPSPLEEGYLEKNFMCVRR--DYFGSDVCLE 353
            ++   I  +L +   LY+    + +            L+KN+    +     G DV   
Sbjct: 305 DLSKHIIKKKLFNEFYLYKCSKSLSKLVNHKEFGFLKELKKNYKNKFKINKKLGKDVITL 364

Query: 354 Y 354
           Y
Sbjct: 365 Y 365


>gi|218673496|ref|ZP_03523165.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
           [Rhizobium etli GR56]
          Length = 419

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 136/251 (54%), Positives = 175/251 (69%), Gaps = 1/251 (0%)

Query: 20  WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPC 79
            H+G T+TNPSV CLIVKDG+ +G+ VTA GG PHAE QAL EAG+ ARGATAYVTLEPC
Sbjct: 1   RHLGRTATNPSVGCLIVKDGVTVGQAVTALGGRPHAEPQALAEAGQLARGATAYVTLEPC 60

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFL 138
           SH+G++PPCA+ +I  G+ RVV+ V DPD RVSGRG+  L   GI VD  ++++EG+  L
Sbjct: 61  SHHGKTPPCAEALIASGVARVVISVTDPDPRVSGRGVSMLRDAGIEVDAGVLQAEGRRSL 120

Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIG 198
             YLTRQ + R ++TLK+AVS D MIG  G G V ITG  ++ +V  LRA++DAILVGIG
Sbjct: 121 AGYLTRQTKNRPYVTLKLAVSADGMIGRKGEGQVAITGPEARAEVQALRAETDAILVGIG 180

Query: 199 TVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           T ++DDP LT R  GL+  SP+RI+LDP   L L SK++ TA   PVI+V   D   L  
Sbjct: 181 TAISDDPLLTVRTPGLEAQSPVRIVLDPSLALPLTSKLVATARDVPVIVVASEDVSPLTA 240

Query: 259 AFRKKNINIIY 269
                  +++ 
Sbjct: 241 DVEGIPPSVLP 251



 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 58/109 (53%)

Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
            N+      A     + I+YC+    + LL  L  RG++SLLVEGGA  A  F+ + LVD
Sbjct: 311 TNEVESRRAALEAAGVEIVYCNPYHPEILLPALATRGISSLLVEGGAKTARLFLEAGLVD 370

Query: 310 SIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
            I LY++ ++IG  GI SPL+   +   F  +    FG+D   EY  ++
Sbjct: 371 RIQLYQAPVIIGADGIESPLDATDIPSGFAHMGTRIFGADRLDEYERES 419


>gi|302541057|ref|ZP_07293399.1| riboflavin biosynthesis protein RibD [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302458675|gb|EFL21768.1| riboflavin biosynthesis protein RibD [Streptomyces himastatinicus
           ATCC 53653]
          Length = 362

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 114/356 (32%), Positives = 170/356 (47%), Gaps = 15/356 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  A+  +   +G TS NP V C+I+  +G   G G     G PHAEV AL  AGE ARG
Sbjct: 1   MRRAVALAARGLGHTSPNPVVGCVILDAEGQPAGEGWHQRAGGPHAEVHALRAAGERARG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            TA VTLEPC+H GR+ PCA+ +++ GI RV   V DP  +  G      +    +    
Sbjct: 61  GTALVTLEPCNHTGRTGPCARALLDAGIARVRYAVADPTGQARGGAATLAAAGVDVAAGP 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +  E +    A+LT     R  +  K A + D     A   S  IT   ++  VH LRA+
Sbjct: 121 LTDEAEAVNEAWLTAMRRGRPFVLWKYAATLDGRSAAADGTSRWITSAAARADVHRLRAE 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTALLAPVIIV 248
           +DA++VG GT+ ADDP L  R        P+R+ +D     L  D++I+  A  AP ++ 
Sbjct: 181 ADAVVVGSGTLRADDPHLAVRDRDGVT-QPLRVAVDTDATALKPDARILDDA--APTLVA 237

Query: 249 TENDDPVLALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
              D     L        +         D+  LL  L  RGV S+L+EGG  +A +F+ +
Sbjct: 238 VAEDADTGHLPAGTDTARLPRARAGRGLDIAALLAALHDRGVRSVLLEGGPTLAGAFLAA 297

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356
             VD ++ Y + +++G G  P+ L +  +      +R D       G D+ +  + 
Sbjct: 298 GAVDKVVGYLAPVLLGAG--PAALADAGITTIAQALRMDTADVTRLGPDLRITAVP 351


>gi|161869403|ref|YP_001598570.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/phosphoribosylamino)uracil reductase
           [Neisseria meningitidis 053442]
 gi|161594956|gb|ABX72616.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/phosphoribosylamino)uracil reductase
           [Neisseria meningitidis 053442]
          Length = 305

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 102/301 (33%), Positives = 153/301 (50%), Gaps = 11/301 (3%)

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A+GATA+VTLEPCSHYGR+PPCA+ ++  G+ RVV  + DP+  V+G+GL  L   GI  
Sbjct: 2   AQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLAMLEAAGIKT 61

Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           +  ++E + +     +L+R   +R  + LK AVS D    ++   S  ITG  ++  V +
Sbjct: 62  ECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQV 121

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           LRA+S A+L GIGTVLAD+P L  R        P RI+LD   +L LDS ++        
Sbjct: 122 LRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPLDSHLLTDGQSPTY 180

Query: 246 IIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
           I   E D+  L       +I I+          DL  L+ +L   G   ++VE G+ +  
Sbjct: 181 IATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTS 240

Query: 301 SFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
           +F+   L D I+LYRS  ++G G     +P           +  V  +  G D+   +  
Sbjct: 241 AFLAEDLADEIVLYRSPKILGGGSGLFCLPENRAALSAPPLWTPVSSEILGHDIKTVFRK 300

Query: 357 K 357
            
Sbjct: 301 N 301


>gi|227542162|ref|ZP_03972211.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227181991|gb|EEI62963.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 324

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 118/360 (32%), Positives = 158/360 (43%), Gaps = 42/360 (11%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M AA+      VG    NP+V C +VK+G VI  G T   G PHAE+ AL  AGE+ARGA
Sbjct: 1   MDAAITAGEEAVGRARPNPAVGCALVKNGRVIATGSTQRVGGPHAEIMALRAAGEDARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           TAYVTLEPC+H GR+ PC+  ++E GI  VV    D     +  G  +L   G+ V+ + 
Sbjct: 61  TAYVTLEPCNHTGRTGPCSLALVEAGIATVVYLTPDTSTPEAAGGGDYLKSHGVEVEYLP 120

Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
            + G +    +  R    R   T+K+A + D         S  ITG  ++   H  R++ 
Sbjct: 121 VAVGALTPWLFAQRNH--RPMFTVKVAHTIDGYAAALDGTSQWITGETARAYAHRDRSRR 178

Query: 191 DAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           DAILVG GT LAD+P LT R     L E+ P +I+      +  D  + +T         
Sbjct: 179 DAILVGTGTALADNPSLTARREDGSLYENQPDKIVFGSRP-VPRDYHLYETG-------- 229

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
                              I  D       L  LV      +LVEGG  V  +   + LV
Sbjct: 230 ------------------FIQVDT------LEELVQLPYNDILVEGGPGVLSTLFTNDLV 265

Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYIGKNLCLQEL 364
           D+I  Y +  V+G  GIP             K F        G DV +       CLQ L
Sbjct: 266 DTIHSYVASAVLGA-GIPLISTGWGTSIQDIKRFSRTDTINLGDDVLIVLERHGSCLQGL 324


>gi|148909999|gb|ABR18084.1| unknown [Picea sitchensis]
          Length = 457

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 107/384 (27%), Positives = 180/384 (46%), Gaps = 40/384 (10%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           MP    DA++M   +  ++  +G TS NP V C+IVKDG ++G+G     G PHAEV AL
Sbjct: 88  MP---EDAQYMRMCISLAKKALGCTSPNPMVGCVIVKDGHIVGQGFHPKAGEPHAEVFAL 144

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAG +A GATAYV+LEPC+HYGR+PPC Q +I+  + RVVV + DP+  V+ +G+  L 
Sbjct: 145 REAGTKAEGATAYVSLEPCNHYGRTPPCTQALIQARVGRVVVGMVDPNPIVASKGVATLR 204

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD-NMIGMAGCGSVPITGFI 178
             GI +   + E   +    AY+ R +  +  IT++ ++S D  M+   G G+    G+ 
Sbjct: 205 NSGIDVTVGVEEKLCQTMNEAYIHRILTGKPFITMRFSMSLDGGMLDDLGDGAAEEGGYY 264

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           SK     +  Q D ++V   T L D+  L     G     P+RI++     L +DS I  
Sbjct: 265 SK-----MLQQYDGVIVSDQT-LYDNLNLLSSEAGA--KQPLRIVVTRTLVLPIDSLIFN 316

Query: 239 TALLAPVIIVTEND------------DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286
           T L   +++  E                 + +  R++ + ++     ++  +L I   RG
Sbjct: 317 TDLAPTLVLADEKAIVDNLQSAGKLNGQTMDMLLRQRGVEVVILKKLEIDSVLDICSQRG 376

Query: 287 VTSLLVEGGAAVAHS---------FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
           + S+ ++    +A +          +    V  +++    ++   G   + L        
Sbjct: 377 LCSVFIDSRG-LASAGLENFIGKQALEEEAVQKLVIAICPMI--SGNKRTELNFDIPPAK 433

Query: 338 FMCVRRDYFGSDVCLE--YIGKNL 359
              +R      DV +   Y  ++ 
Sbjct: 434 LNRLRTK-LSKDVAVVEGYFPRDF 456


>gi|54297135|ref|YP_123504.1| riboflavin biosynthesis protein RibD [Legionella pneumophila str.
           Paris]
 gi|53750920|emb|CAH12331.1| Riboflavin biosynthesis protein RibD [Legionella pneumophila str.
           Paris]
          Length = 357

 Score =  255 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 102/357 (28%), Positives = 161/357 (45%), Gaps = 7/357 (1%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            +F+ AAL  ++   G  + NPSV  + V++G +I +      G PHAE   L +   + 
Sbjct: 3   EQFLLAALEQAKLGRGFCAPNPSVGAVAVQNGNIIAQAWHRGAGTPHAEQLLLSQIPPQT 62

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG-LQWLSQKGIIV 126
            G T YVTLEPC+H+G++PPC   II  GI+ VV    DP+  V+     + L + GI V
Sbjct: 63  PGVTLYVTLEPCNHWGKTPPCVDAIINHGIQEVVFSYFDPNPIVAKSNSSEKLREHGIQV 122

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +       F  +Y    +  +  +T+KIA + D  IG +    V ++  + +   H +
Sbjct: 123 RHIPIKAIDAFYKSYAYWTMTHKPRVTVKIAQTFDGKIGKSEGDRVVLSNVLCEQFTHQM 182

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA SD IL    TV  D+P +  RL+      P+ I+ D +  LS D+ I  TA     I
Sbjct: 183 RAASDVILTSAKTVQMDNPRMNARLDSGVVAKPVAIV-DRNLSLSDDTIIFSTAKHCH-I 240

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
                 +              +     DL  ++T L   G   + VE G A+  +  +  
Sbjct: 241 YHQPQANQAKTYPNSTHYAMPLQNGLMDLDAIITHLGQLGYHDVWVEAGGAIFSALHSKG 300

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV--CLEYIGKNLCL 361
           LV    LY     +G   I +  ++G  EK    V     G ++  CL++  ++ CL
Sbjct: 301 LVHRTYLYLVPGSLGHQAISAYQQQGIFEK-AHTVSWQAMGDNMIACLDW-QEDECL 355


>gi|168045667|ref|XP_001775298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673379|gb|EDQ59903.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 602

 Score =  255 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 95/369 (25%), Positives = 167/369 (45%), Gaps = 19/369 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+R +  A+  ++   GLT+ +P   C++V+   V+G G  +  G   AEVQA+EEAGE 
Sbjct: 19  DSRHLLKAVELAKRSDGLTAPHPKFGCVVVRGRRVVGTGGLSGLGARPAEVQAVEEAGEY 78

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ARGATA++ LEP    G     A  ++  G+ R+VV +  P     G+ +  L   G+ V
Sbjct: 79  ARGATAFLNLEPGDCGGDDAAVA-ALVRGGLERIVVGMRHPLPHFRGKAIAALQSAGVKV 137

Query: 127 DRMMES------------EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           D   E               ++     L R        TLK A++ D  I  +   S  +
Sbjct: 138 DVAGEDCGIGGAIEAALKACQLANAPLLYRASHNLPMSTLKYAMTLDGKIAASSGHSAWV 197

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           +   S+ +V   RAQ DA++VG  TV +D+P LT R  G   H P RI++     L  ++
Sbjct: 198 SSADSRRRVFETRAQCDAVIVGGNTVRSDNPNLTTRQAG--GHQPDRIVITRTMNLPREA 255

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
            +  T+    +++  +  +         + + ++  D    + ++     RG  S+L E 
Sbjct: 256 NLWDTSNAHTIVMTEKGANVEFQKHLASRGVEVVQFDLISPRAVMEHCYSRGYLSVLWEC 315

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           G  ++   I   ++  ++ + +  V+G    P+P+ E    +    ++     SDV  E 
Sbjct: 316 GGMLSAPAIQGGVIHKVLAFIAPKVVGGLQAPTPVGELGFVQMTQALKL----SDVSFEL 371

Query: 355 IGKNLCLQE 363
            G ++ +  
Sbjct: 372 TGPDMLVTG 380


>gi|222622845|gb|EEE56977.1| hypothetical protein OsJ_06705 [Oryza sativa Japonica Group]
          Length = 558

 Score =  255 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 86/347 (24%), Positives = 147/347 (42%), Gaps = 49/347 (14%)

Query: 23  GLTSTNPSVACLIVK--------DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYV 74
           GLTS +P+  C+I +        +  V+G G     G P AE+ A +EAGE ARGATAY+
Sbjct: 50  GLTSPHPNFGCVIARPQLETDNAEAWVVGEGFLYAQGTPCAELLAAQEAGEHARGATAYL 109

Query: 75  TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
            LEP   YG S   +  + E     ++V                                
Sbjct: 110 NLEPGDCYGDSTAVSTLVQEALKSCLIV-------------------------------- 137

Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
                  L R   +     LK A++ D  I  +   +  ++G  S+ +V  LR +SDAI+
Sbjct: 138 ---NAPLLYRAAFRVPFSVLKYAMTADGKIAASSGHASWVSGKSSRGRVFELRGRSDAII 194

Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
           VG  TV  DDP LT R   ++ H P+RI++     L  ++ +        ++        
Sbjct: 195 VGGNTVRLDDPRLTAR--HVKGHVPVRIVMSQSLNLPEEANLWNVHDAYTIVATQRGARR 252

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
            L      K + ++  D  + + +++    RG  S+L E G  +A S I++ ++  +  +
Sbjct: 253 DLQKKLALKGVEVVEFDMLNPRDVMSYCYDRGYLSVLWECGGTLAASAISASVIHKVYAF 312

Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
            +  +IG    P+P+ E  + +    +       DV  E I +++ +
Sbjct: 313 LAPKIIGGVNAPTPVGELGMNQMTQAIDLI----DVSYEQIDRDMLM 355


>gi|52841411|ref|YP_095210.1| riboflavin biosynthesis protein RibD [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628522|gb|AAU27263.1| riboflavin biosynthesis protein RibD [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 357

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 102/357 (28%), Positives = 162/357 (45%), Gaps = 7/357 (1%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            +F+ AAL  ++   G  + NPSV  + V++G +I +      G PHAE   L +   + 
Sbjct: 3   EQFLLAALEQAKLGRGFCAPNPSVGAVAVQNGNIIAQAWHRGAGTPHAEQLLLSQIPPQT 62

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG-LQWLSQKGIIV 126
            G T YVTLEPC+H+G++PPC   II  GI  VV    DP+  V+     + L + GI V
Sbjct: 63  PGVTLYVTLEPCNHWGKTPPCVDAIINHGIEEVVFSYFDPNPIVAKSNSSEKLREHGIQV 122

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +      +F  +Y    +  +  +T+KIA + D  IG +    V ++  + +   H +
Sbjct: 123 RHIPVKAIDVFYKSYAYWTMTHKPRVTVKIAQTFDGKIGKSEGARVVLSNALCEQFTHQM 182

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA SD IL    TV  D+P +  RL+      P+ I+ D +  LS D+ I  TA     I
Sbjct: 183 RAASDVILTSAKTVQMDNPRMNARLDSGLVAKPVAIV-DRNLSLSDDTIIFSTAKHCH-I 240

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
                 +              +     DL+ ++T L   G   + VE G A+  +  +  
Sbjct: 241 YHQPQANQAKTYPNSTHYAMPLQNGLMDLEAIITHLGQLGYHDVWVEAGGAIFSALHSKG 300

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV--CLEYIGKNLCL 361
           LV    LY     +G   I +  ++G  EK    V     G ++  CL++  ++ CL
Sbjct: 301 LVHRTYLYLVPGSLGHQAISAYQQQGIFEK-AHTVSWQAMGDNMIACLDW-QEDECL 355


>gi|149276501|ref|ZP_01882645.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; 5-amino-6-(5-phosphoribosylamino)uracil
           [Pedobacter sp. BAL39]
 gi|149233021|gb|EDM38396.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; 5-amino-6-(5-phosphoribosylamino)uracil
           [Pedobacter sp. BAL39]
          Length = 332

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 99/346 (28%), Positives = 157/346 (45%), Gaps = 31/346 (8%)

Query: 22  VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------GEEARGATAY 73
           +G  S NP V C+IV +G +IG G     G  HAEV A+                 ATAY
Sbjct: 1   MGNVSPNPMVGCVIVSEGKIIGEGYHEQFGAAHAEVNAINSVWSAYPDQAAALLAQATAY 60

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMES 132
           V+LEPC+H+G++PPCA  +I+  +++VV+   DP   V+G+G+  L+  GI ++  ++E 
Sbjct: 61  VSLEPCAHFGKTPPCADLLIKNQLQKVVIGNRDPFPDVNGKGIAKLNAAGIEVISGILEE 120

Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
           E       + TR  ++R  I LK A + +            I+  +SK  VH  R + DA
Sbjct: 121 ECTALNIRFFTRISQQRPFIILKWANTANGYFAPKTDIPQWISSPLSKRLVHKWRTEEDA 180

Query: 193 ILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252
            LVG  T + D+P+L+ R       +P+RI++D   ++  D  +   A  A  II  E  
Sbjct: 181 TLVGKRTAIIDNPQLSAR--DWPGKNPVRILIDRRLEVPADRHLYDAA--AKTIIFNEV- 235

Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
               A+      I +        +K+   L    + S++++GG  + + FI   L D   
Sbjct: 236 --KTAVDGHIHYIQMEDMQYYLPQKIAFQLYLMDIQSVIIDGGVNIINQFIAGGLWDEAR 293

Query: 313 LYRS----QIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           ++ S           GI SP   G +            G+D    Y
Sbjct: 294 VFTSAHSWP-----DGIRSPEINGII------TSVQTIGADTLTIY 328


>gi|296117961|ref|ZP_06836544.1| riboflavin biosynthesis protein RibD [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969192|gb|EFG82434.1| riboflavin biosynthesis protein RibD [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 355

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 115/355 (32%), Positives = 167/355 (47%), Gaps = 33/355 (9%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           + +  A+       G TS NP V  ++V   G ++G G T   G  HAEVQAL EA    
Sbjct: 17  KALRTAMSAGWEVRGTTSPNPPVGAVMVSTAGEIVGTGATQPAGGAHAEVQALAEAVGRT 76

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            GATA VTLEPC H GR+ PC Q +IE GI+ V     DP+   +G G + L + G+ V 
Sbjct: 77  DGATAVVTLEPCRHTGRTGPCTQALIEAGIQEVYYLHSDPNPE-AGGGAEALREAGVNVT 135

Query: 128 RMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
           ++   E     L  +L      R H+TLK A + D     A   S  ITG +++  VH  
Sbjct: 136 QLSAPEGMPDALIPWLKSVQLGRPHVTLKFAQTIDGFTAAADGTSQWITGEMARQYVHED 195

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGL--QEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
           RA  DAI++G GT L D+P LT R      +EH P R+++          ++        
Sbjct: 196 RAHRDAIIIGTGTALTDNPSLTARFPDGSQREHQPRRVVIGRR-------RLAD------ 242

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
              V EN   +  L F +            + + L  L   G   +LVEGGA +A  F+N
Sbjct: 243 ---VGENASNLNRLGFEQYAK---------IDEALQELYASGARDVLVEGGAGLASGFMN 290

Query: 305 SRLVDSIILYRSQIVIGEGG--IPSPLEEGYL-EKNFMCVRRDYFGSDVCLEYIG 356
           + LVD + +Y++ +++GEG   +  PL         F   +    G D+ + Y+ 
Sbjct: 291 AGLVDWVQVYQAPLLLGEGISVLAHPLTNTLKGAARFSRGQVVALGDDLLINYVR 345


>gi|149921258|ref|ZP_01909714.1| riboflavin-specific deaminase
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Plesiocystis pacifica SIR-1]
 gi|149817918|gb|EDM77380.1| riboflavin-specific deaminase
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Plesiocystis pacifica SIR-1]
          Length = 366

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 116/365 (31%), Positives = 175/365 (47%), Gaps = 13/365 (3%)

Query: 1   MPVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           M     DA  +M  ALR ++   G T  NP V  ++VK G+V+GRG +   G PHAEV+A
Sbjct: 1   MAAKQRDAAHWMGHALRLAKSGTGATYPNPCVGAVLVKKGVVVGRGRSDVTGGPHAEVRA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           L +AG  ARGA  YVTLEPCSH GR+PPC   IIE G+RRV + V+DP   V G+G++ L
Sbjct: 61  LRQAGAAARGAAMYVTLEPCSHRGRTPPCVDAIIEAGVRRVCIGVEDPAPHVGGKGIRKL 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            + G+ +   +   + +     YL      R  +TLK+A S D  +  A   S  ITG  
Sbjct: 121 RRAGLEVEVGVCGDQARSIHAHYLHHVATGRPFVTLKVASSIDGRLATASGDSKWITGAA 180

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-I 237
           ++   H LRA    I VG  TVL D+P L  R   +    P+ +I D   +++   +  +
Sbjct: 181 ARKSAHRLRALHHGIAVGSETVLRDNPGLDVR--HVDGVDPIPVIFDSRLRVTAAKRAEL 238

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLV 292
           K      +++ T            +  +  +          D++  L +L  R + SL+V
Sbjct: 239 KLMRAGVLVLYTARASKTAQARLARTPVEGVEVPGDAEGRVDIEAALELLGARELRSLMV 298

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSD 349
           EGG  +  SF+ +   + + +YR+ +++GEG         +E               G D
Sbjct: 299 EGGGKLLGSFVAADAFEELWVYRAPVILGEGRPILAGLAFDEVARAPRLRQHSTRKLGDD 358

Query: 350 VCLEY 354
               Y
Sbjct: 359 QLTVY 363


>gi|148272143|ref|YP_001221704.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
 gi|147830073|emb|CAN01002.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
          Length = 356

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 112/358 (31%), Positives = 156/358 (43%), Gaps = 37/358 (10%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE--AG 64
            R M   L  +         NP V C+I+   G VI  G     G  HAEV AL +  AG
Sbjct: 22  ERAMRRGLELAAEGPAW-GPNPRVGCVILDARGRVIAEGRHRGAGSAHAEVDALRQLPAG 80

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
             ARG+TA VTLEPC+H GR+ PCA  +IE G+ RV   V DP V  SG G   L   GI
Sbjct: 81  -AARGSTAVVTLEPCNHTGRTGPCAAALIEAGVARVAYAVADPGVESSG-GAARLRAAGI 138

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            ++D ++  E   FL  +L      R  +T K A S D  I  A   S  ITG  ++  V
Sbjct: 139 EVIDGVLADEAAAFLRVWLGSARLGRPFVTAKWASSLDGRIAAADGTSRWITGPAAREDV 198

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGL--QEHSPMRIILDPHFKLSLDSKIIKTAL 241
           H  RA++DAILVG GTVLADDP LT R        H P  ++L     +  D+ +     
Sbjct: 199 HRRRAEADAILVGTGTVLADDPALTARRPDGIPYPHQPAPVVLGDRA-IPDDAAV----- 252

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
                               +    +I     D    +  L  RG+  + VEGG  +  +
Sbjct: 253 -------------------HRHPRRLIRITGHDPAAAIAELGRRGIRHVFVEGGPTIVSA 293

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
            + + LVD ++ Y + +++G     +    +E          +     G D+ +    
Sbjct: 294 LVAAGLVDEVVAYLAPVLLGGPRTATGDLGVESMPAAHRLTLISTTRLGDDILVTARP 351


>gi|323343508|ref|ZP_08083735.1| riboflavin biosynthesis protein RibD [Prevotella oralis ATCC 33269]
 gi|323095327|gb|EFZ37901.1| riboflavin biosynthesis protein RibD [Prevotella oralis ATCC 33269]
          Length = 321

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/360 (28%), Positives = 155/360 (43%), Gaps = 58/360 (16%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           +  D R+M   ++ +   +     NP V  L+  +G +IG G     G  HAEV      
Sbjct: 14  TEEDIRYMRRCIQLALNGMQNAKPNPMVGALLACEGRIIGEGYHIRFGEGHAEVNCFASV 73

Query: 64  GEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                     +T YV+LEPCSHYG++PPCA  II  G+RRVVV   DP  +V GRG+  L
Sbjct: 74  KPADEHLLPQSTLYVSLEPCSHYGKTPPCADLIIRNGVRRVVVGCIDPFAQVHGRGIHKL 133

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            + GI +V  ++E E       ++T     R +I LK A + +  I         I+   
Sbjct: 134 REAGIEVVVGVLERECLALNKRFITYNTRLRPYIILKWAQTSNGFIDDCFHALS-ISTPF 192

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           +K   H LR +SDAILVG  T   + P L  R        P+RI+LD             
Sbjct: 193 TKMLSHKLRVESDAILVGRVTDEREHPMLNVR--HWSGRDPLRIVLDHR----------- 239

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
                                             +++  L+T L  + V SL+VEGGA  
Sbjct: 240 ----------------------------------QNIADLMTSLYEKKVQSLIVEGGAKT 265

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
             SF+ + L D I +  + + + +GG P+P     +  +   +R+D +  ++   ++   
Sbjct: 266 LQSFLTAGLWDEIRVETAPLTV-KGGTPAP----RIPTDIRLIRQDIYDGNIISVFVKDE 320


>gi|218190720|gb|EEC73147.1| hypothetical protein OsI_07177 [Oryza sativa Indica Group]
          Length = 577

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 86/347 (24%), Positives = 147/347 (42%), Gaps = 49/347 (14%)

Query: 23  GLTSTNPSVACLIVK--------DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYV 74
           GLTS +P+  C+I +        +  V+G G     G P AE+ A +EAGE ARGATAY+
Sbjct: 69  GLTSPHPNFGCVIARPQLETDNAEAWVVGEGFLYAQGTPCAELLAAQEAGEHARGATAYL 128

Query: 75  TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
            LEP   YG S   +  + E     ++V                                
Sbjct: 129 NLEPGDCYGDSTAVSTLVQEALKSCLIV-------------------------------- 156

Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
                  L R   +     LK A++ D  I  +   +  ++G  S+ +V  LR +SDAI+
Sbjct: 157 ---NAPLLYRAAFRVPFSVLKYAMTADGKIAASSGHASWVSGKSSRGRVFELRGRSDAII 213

Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
           VG  TV  DDP LT R   ++ H P+RI++     L  ++ +        ++        
Sbjct: 214 VGGNTVRLDDPRLTAR--HVKGHVPVRIVMSQSLNLPEEANLWNVHDAYTIVATQRGARR 271

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
            L      K + ++  D  + + +++    RG  S+L E G  +A S I++ ++  +  +
Sbjct: 272 DLQKKLALKGVEVVEFDMLNPRDVMSYCYDRGYLSVLWECGGTLAASAISASVIHKVYAF 331

Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
            +  +IG    P+P+ E  + +    +       DV  E I +++ +
Sbjct: 332 LAPKIIGGVNAPTPVGELGMNQMTQAIDLI----DVSYEQIDRDMLM 374


>gi|270339625|ref|ZP_06005479.2| riboflavin biosynthesis protein RibD [Prevotella bergensis DSM
           17361]
 gi|270334334|gb|EFA45120.1| riboflavin biosynthesis protein RibD [Prevotella bergensis DSM
           17361]
          Length = 365

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 111/372 (29%), Positives = 159/372 (42%), Gaps = 61/372 (16%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D R+M   L+ +R        NP V  +IV +DG +IG G     G  HAEV A      
Sbjct: 29  DERYMRRCLQLARNGWQNAKPNPMVGAVIVSRDGRIIGEGYHVRCGEGHAEVNAFASVRP 88

Query: 66  E----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           E     + +T YV+LEPCSH+G++PPCA  I++ G+RRVV    DP  +V GRG+  + +
Sbjct: 89  EDEVLLKESTVYVSLEPCSHWGKTPPCADLIVKKGVRRVVCGCIDPFSKVQGRGVAHIRK 148

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS--------- 171
            GI +   ++E E       ++T   EKR +I LK A +++  I  A             
Sbjct: 149 AGIEVTVGVLEQECLELNRRFITFNTEKRPYILLKWAQTENGKIASASVTPAVGSGVSTV 208

Query: 172 -----VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDP 226
                + ++   +K  VH LRA++DAILVG  TV AD P+L  R        P R++L  
Sbjct: 209 MTVAPLVLSSAFTKMLVHKLRAENDAILVGHETVRADHPQLNTR--SWSGRDPERLVLAR 266

Query: 227 HFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286
                                   +D P     F             D+ KLL  L    
Sbjct: 267 ----------------------CTDDVPQWFKCF------------DDMDKLLQYLYNNR 292

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
             SL+VEGGA    SF+   L D I +  +   + EG     ++   L  N   V    +
Sbjct: 293 RQSLIVEGGAVTLRSFLERGLWDEIRVETAPWSVAEG-----VDAPDLPDNVRLVESHDY 347

Query: 347 GSDVCLEYIGKN 358
             +    Y   N
Sbjct: 348 DGNTIQRYFKVN 359


>gi|307609932|emb|CBW99459.1| riboflavin biosynthesis protein RibD [Legionella pneumophila 130b]
          Length = 357

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 100/357 (28%), Positives = 162/357 (45%), Gaps = 7/357 (1%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            +F+ AAL  ++   G  + NPSV  + V++G +I +      G PHAE   L +   + 
Sbjct: 3   EQFLLAALEQAKLGRGFCAPNPSVGAVAVQNGNIIAQAWHRGAGTPHAEQLLLSQILPQT 62

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG-LQWLSQKGIIV 126
            G T YVTLEPC+H+G++PPC   II  GI  VV    DP+  V+     + L + GI V
Sbjct: 63  PGVTLYVTLEPCNHWGKTPPCVDAIINHGIEEVVFSYFDPNPIVAKSNSSEKLREHGIQV 122

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +      +F  +Y    +  +  +T+K+A + D  IG +    V ++  + +   H +
Sbjct: 123 RHIPIKAIDVFYKSYAYWTMTHKPRVTVKMAQTFDGKIGKSEGARVVLSNALCEQFTHQM 182

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA SD IL    TV  D+P +  RL+      P+ I+ D +  LS D+ I  TA     I
Sbjct: 183 RAASDVILTSAKTVQMDNPRMNARLDSGLVAKPVAIV-DRNLSLSDDTIIFSTAKHCH-I 240

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
                 +              +     +L+ ++T L   G   + VE G A+  +  +  
Sbjct: 241 YHQPQANQAKTYPNSTHYAMPLQNGLMNLEAIITHLGQLGYHDVWVEAGGAIFSALHSKG 300

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV--CLEYIGKNLCL 361
           LV    LY     +G   I +  ++G  EK    V     G ++  CL++  ++ CL
Sbjct: 301 LVHRTYLYLVPGSLGHQAISAYQQQGIFEK-AHTVSWQAMGDNMIACLDW-QEDECL 355


>gi|148261112|ref|YP_001235239.1| riboflavin biosynthesis protein RibD [Acidiphilium cryptum JF-5]
 gi|146402793|gb|ABQ31320.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Acidiphilium
           cryptum JF-5]
          Length = 363

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 141/362 (38%), Positives = 200/362 (55%), Gaps = 10/362 (2%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D   M  AL  +R  +G T+ NP+V C+IV+ G V+GRG TA GG PHAE +AL  AG+
Sbjct: 2   DDLAHMRTALALARRGLGETAPNPTVGCVIVRGGRVVGRGRTAQGGRPHAETEALAAAGD 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
            ARGATAYVTLEPC+H+GR+PPCA  ++  GI RVVV + DPD R +G GL  L + G+ 
Sbjct: 62  AARGATAYVTLEPCAHHGRTPPCADALVAAGIARVVVAMTDPDERTNGAGLSRLREAGLE 121

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +V+ +  +E       +  R  E R  +TLK+A S D  I      S  ITG  ++   H
Sbjct: 122 VVEGIGGAEAAEINAGFCKRIREGRPLVTLKLATSLDGQIATRTGASQWITGAAARQAAH 181

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR   DA++VG+GTVLADDPELTCRL G +    +R+I+D H ++ LD ++++ A   P
Sbjct: 182 ALRGTHDAVMVGVGTVLADDPELTCRLEGFRSTPVIRLIVDSHLRIPLDGRLVRGAADHP 241

Query: 245 VIIVT-ENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           + IV  +  DP    A       +          DL   L ++   G+T +L EGG  +A
Sbjct: 242 LWIVHRDGADPARRAALLDLGARLFEVPAAPVGIDLAAALAVVGAAGLTRVLAEGGGTLA 301

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
            + I + LVD +  + + +VIG+ GI +     +EE      F  +     G D+   Y 
Sbjct: 302 AALIRADLVDRLEWFTAPVVIGDDGIGAVAGFGVEELGRAARFTRIDASVCGGDIRTRYR 361

Query: 356 GK 357
             
Sbjct: 362 RD 363


>gi|54294122|ref|YP_126537.1| riboflavin biosynthesis protein RibD [Legionella pneumophila str.
           Lens]
 gi|53753954|emb|CAH15425.1| Riboflavin biosynthesis protein RibD [Legionella pneumophila str.
           Lens]
          Length = 357

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 162/357 (45%), Gaps = 7/357 (1%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            +F+ AAL  ++   G  + NPSV  + V++G +I +      G PHAE   L +   + 
Sbjct: 3   EQFLLAALEQAKLGRGFCAPNPSVGAVAVQNGNIIAQAWHRGAGTPHAEQLLLSQILPQT 62

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG-LQWLSQKGIIV 126
            G T YVTLEPC+H+G++PPC   II  GI  VV    DP+  V+     + L + GI V
Sbjct: 63  PGVTLYVTLEPCNHWGKTPPCVDAIINHGIEEVVFSYFDPNPIVAKSNSSEKLREHGIQV 122

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +      +F  +Y    +  +  +T+KIA + D  IG +    V ++  + +   H +
Sbjct: 123 RHIPIKAIDVFYKSYAYWTMTHKPRVTVKIAQTFDGKIGKSEGARVVLSNSLCEQFTHQM 182

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA SD IL    TV  D+P +  RL+      P+ I+ D +  LS D+ I  TA     I
Sbjct: 183 RAASDVILTSAKTVQMDNPRMNARLDTGLVAKPVAIV-DRNLSLSDDTIIFSTAKHCH-I 240

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
                 +              +     +L+ ++T L   G   + VE G A+  +  +  
Sbjct: 241 YHQPQANQAKTYPNSTHYAMPLQNGLMNLEAIITHLGQLGYHDVWVEAGGAIFSALHSKG 300

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV--CLEYIGKNLCL 361
           LV    LY     +G   I +  ++G  EK    V     G ++  CL++  ++ CL
Sbjct: 301 LVHRTYLYLVPGSLGHQAISAYQQQGIFEK-AHTVSWQAMGDNMIACLDW-QEDECL 355


>gi|148358764|ref|YP_001249971.1| riboflavin biosynthesis protein RibD [Legionella pneumophila str.
           Corby]
 gi|296106809|ref|YP_003618509.1| riboflavin biosynthesis protein [Legionella pneumophila 2300/99
           Alcoy]
 gi|148280537|gb|ABQ54625.1| riboflavin biosynthesis protein RibD [Legionella pneumophila str.
           Corby]
 gi|295648710|gb|ADG24557.1| riboflavin biosynthesis protein [Legionella pneumophila 2300/99
           Alcoy]
          Length = 357

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 100/357 (28%), Positives = 159/357 (44%), Gaps = 7/357 (1%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            +F+ AAL  ++   G  + NPSV  + V++G +I +      G PHAE   L +   + 
Sbjct: 3   EQFLLAALEQAKLGRGFCAPNPSVGAVAVQNGNIIAQAWHRGAGTPHAEQLLLSQIPPQT 62

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG-LQWLSQKGIIV 126
              T Y+TLEPC+H+G++PPC   II  GI  VV    DP+  V+     + L + GI V
Sbjct: 63  PEVTLYITLEPCNHWGKTPPCVDAIINHGIEEVVFAYFDPNPIVAKSNSSEKLREHGIQV 122

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +       F  +Y    +  +  +T+KIA + D  IG +    V ++  + +   H +
Sbjct: 123 RHIPIKAIDAFYKSYAYWTMTHKPRVTVKIAQTFDGKIGKSEGDRVVLSNVLCEQFTHQM 182

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA SD IL    TV  D+P +  RL+      P+ I+ D +  LS D+ I  TA     I
Sbjct: 183 RAASDVILTSAKTVQMDNPRMNARLDSGVVAKPVAIV-DRNLSLSDDTIIFSTAKHCH-I 240

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
                 +              +     DL  ++T L   G   + VE G A+  +  +  
Sbjct: 241 YHQPQANQAKTYPNSTHYAMPLQNGLMDLDAIITHLGQLGYHDVWVEAGGAIFSALHSKG 300

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV--CLEYIGKNLCL 361
           LV    LY     +G   I +  ++G  EK    V     G ++  CL++  ++ CL
Sbjct: 301 LVHRTYLYLVPGSLGHQAISAYQQQGIFEK-AHTVSWQAMGDNMIACLDW-QEDECL 355


>gi|241761018|ref|ZP_04759107.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374637|gb|EER64098.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 323

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 116/364 (31%), Positives = 172/364 (47%), Gaps = 50/364 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
           M     D R+M AA+       GLT+ +PSV C+IV KD  +IGRG T  GG PHAE  A
Sbjct: 1   MTHLENDIRWMQAAIALGERSKGLTAPSPSVGCIIVNKDNQIIGRGWTQSGGRPHAEAMA 60

Query: 60  LEEAGEEARGATAYVTLEPCSH-YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           L +  +  +GAT YVTLEPC+H   R P C+  ++     RVV+   DPD R +G+G+  
Sbjct: 61  LSQC-QSLKGATVYVTLEPCAHKSNRGPTCSDSLVAALPERVVIACRDPDPRTNGQGISK 119

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           +   GI +   ++E +    +  + +RQ++ R ++TLK+A S D  I +    S  ITG 
Sbjct: 120 MVAAGIKVECGLLEKQAAQSMSGFFSRQLKARPYVTLKMATSLDGCIALENGESQWITGE 179

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            ++   HL R +S+ I+VG  T+  D P L  RL GL + SP + +L  H ++       
Sbjct: 180 RARAHAHLERMRSELIVVGRKTLEFDKPSLNVRLQGLGDRSPKKAVL-GHGEIPSG---W 235

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                   II T  D                                     +L+EGGA 
Sbjct: 236 IGLREPTDIIKTTAD------------------------------------HVLIEGGAK 259

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352
            A +F+ + LVD I+LYR+ I+IG  G+ +  + G          +    R   G+D   
Sbjct: 260 TAAAFLKADLVDRILLYRAPILIG-KGLHALADIGLTNLSEAHHRWHLKERRTLGNDQLE 318

Query: 353 EYIG 356
            Y+ 
Sbjct: 319 AYLR 322


>gi|262182497|ref|ZP_06041918.1| riboflavin biosynthesis protein ribD [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 342

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 115/359 (32%), Positives = 156/359 (43%), Gaps = 39/359 (10%)

Query: 13  AALRFS----RWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            AL  +        G TS NP V  +I+   G V+G G T   G PHAEV AL +AG++A
Sbjct: 12  RALHVAMGAGEQVRGTTSPNPPVGAVILDSAGQVVGVGATQPPGGPHAEVMALRDAGDKA 71

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           RG TA VTLEPC+H GR+ PCAQ +I+  +  V     DP  +  G     L + GI V 
Sbjct: 72  RGGTAVVTLEPCNHTGRTGPCAQALIDASVAAVYYLHPDPTPQAGGGS-TTLRRAGITVG 130

Query: 128 RMMES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
           ++    E    L  +L      R H+TLK A S D         S  ITG  ++  VH  
Sbjct: 131 QLSAPTERADALEPWLGAVALGRPHVTLKFAQSLDGFTAAVDGSSQWITGEQAREHVHRD 190

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
           R Q DAIL+G GT LAD+P LT R     L+   P R+++                    
Sbjct: 191 RTQRDAILIGTGTALADNPSLTARFPDGSLRPQQPRRVVIGSRN---------------- 234

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
             +       +  L F               ++ L  L   G   +LVEGGA +A SF+ 
Sbjct: 235 --VSHGGKTNLERLGFEHY---------ASPQEALAELYTTGARDILVEGGAGLATSFME 283

Query: 305 SRLVDSIILYRSQIVIGEG-GIPSPLEEGYL--EKNFMCVRRDYFGSDVCLEYIGKNLC 360
              VD I  Y   +V+GEG G+ +      L   + +        G D+ +EY      
Sbjct: 284 LGFVDRIQAYIGNVVLGEGRGVLTSAVSSNLAGAQRWRRCAVTELGEDLLVEYRKDEKL 342


>gi|145224309|ref|YP_001134987.1| riboflavin biosynthesis protein RibD [Mycobacterium gilvum PYR-GCK]
 gi|315444641|ref|YP_004077520.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. Spyr1]
 gi|145216795|gb|ABP46199.1| riboflavin biosynthesis protein RibD [Mycobacterium gilvum PYR-GCK]
 gi|315262944|gb|ADT99685.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. Spyr1]
          Length = 333

 Score =  252 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 114/356 (32%), Positives = 169/356 (47%), Gaps = 38/356 (10%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M+AA+  S    G T  NP V  +I+  DG + G G TA  G PHAEV AL  AGE A G
Sbjct: 7   MAAAIVQSERVKGRTYPNPPVGAVILDSDGEIAGVGATAPTGGPHAEVVALRRAGERAAG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            TA VTLEPC+H+GR+PPC   +I+ G+  V   V DP+   +G   +  +    +   +
Sbjct: 67  GTAVVTLEPCNHFGRTPPCVDALIDAGVAAVAFAVADPNPAAAGGAARLAAAGVRVSAGV 126

Query: 130 MESEGK-IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +        L  +L +Q   + H+T K A S D     A   S  IT   S+  VH  RA
Sbjct: 127 VADAVTGGPLREWLHKQRTGKPHVTWKFAASVDGRSAAADGTSQWITSEASRADVHRRRA 186

Query: 189 QSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
            +DAI+ G GTV ADDP LT RL    L +H P+R+++    ++S D+ ++       VI
Sbjct: 187 AADAIVAGTGTVFADDPALTARLPDGSLADHQPLRVVVGMR-EISPDATVLNDDSRTMVI 245

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
                                     RD  +++  L  R  T +LVEGG  +A +F+ + 
Sbjct: 246 ------------------------RTRDPHEVIQALTDR--TDVLVEGGPTLAGAFLRAG 279

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLEYIGK 357
            +D I+ Y + I++G  G  + +++  +       R  +      G DV L  +  
Sbjct: 280 AIDRILAYVAPILLG--GPVTAVDDVGVSSITQAHRWRFDGMQAIGPDVLLSLVPN 333


>gi|56551372|ref|YP_162211.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56542946|gb|AAV89100.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 323

 Score =  252 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 116/364 (31%), Positives = 171/364 (46%), Gaps = 50/364 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
           M     D R+M AA+       GLT+ +PSV C+IV KD  +IGRG T  GG PHAE  A
Sbjct: 1   MTHLENDIRWMQAAIALGERSKGLTAPSPSVGCIIVNKDNQIIGRGWTQSGGRPHAEAMA 60

Query: 60  LEEAGEEARGATAYVTLEPCSH-YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           L +  +  +GAT YVTLEPC+H   R P C+  ++     RVV+   DPD R +G+G+  
Sbjct: 61  LSQC-QSLKGATVYVTLEPCAHKSNRGPTCSDSLVAAQPERVVIACRDPDPRTNGQGISK 119

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           +   GI +   ++E +    +  + +RQ++ R ++TLK+A S D  I +    S  ITG 
Sbjct: 120 MVAAGIKVECGLLEKQAAQSMSGFFSRQLKARPYVTLKMATSLDGCIALENGESQWITGE 179

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            ++   HL R +S+ I+VG  T+  D P L  RL GL + SP + +L  H ++       
Sbjct: 180 RARAHAHLERMRSELIVVGRKTLEFDKPSLNVRLQGLGDRSPKKAVL-GHGEIPSG---W 235

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                   II T  D                                     +L+EGGA 
Sbjct: 236 IGLREPTDIIKTTAD------------------------------------HVLIEGGAK 259

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352
            A +F+   LVD I+LYR+ I+IG  G+ +  + G          +    R   G+D   
Sbjct: 260 TAAAFLKGDLVDRILLYRAPILIG-KGLHALADIGLTHLSEAHHRWHLKERRTLGNDQLE 318

Query: 353 EYIG 356
            Y+ 
Sbjct: 319 AYLR 322


>gi|118462896|ref|YP_882551.1| riboflavin biosynthesis protein RibD [Mycobacterium avium 104]
 gi|118164183|gb|ABK65080.1| riboflavin biosynthesis protein RibD [Mycobacterium avium 104]
          Length = 341

 Score =  252 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 103/371 (27%), Positives = 166/371 (44%), Gaps = 44/371 (11%)

Query: 1   MPVSSFDA--RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEV 57
           M  S  D     M  A+  S    G T  NP V  +++     +     T   G  HAE+
Sbjct: 1   MTASLGDRLDAAMRLAIEQSNQVKGNTYPNPPVGAVVLDGRGEVVGVGGTEPAGGDHAEI 60

Query: 58  QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            AL  AG+ A G T  VTLEPC+H+G++PPC   ++E G+  VV  V DP+ + +G   +
Sbjct: 61  LALRRAGDLAAGGTVVVTLEPCNHHGKTPPCVDALLEAGVSTVVYAVADPNPQAAGGAGR 120

Query: 118 WLSQKGIIVDRMMESEGK-IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
                  +   ++  E     L  +L +Q     H+T K A S D     A   S  I+ 
Sbjct: 121 LQEAGVTVRSGLLADEVSGGPLREWLHKQRTGLPHLTWKYASSVDGRSAAADGSSRWISS 180

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDS 234
             S+  +H  RA +DAI+VG GTVLADDP LT RL    L +  P+R+++    ++  ++
Sbjct: 181 EASRLDLHRRRAAADAIVVGTGTVLADDPALTARLPDGTLADRQPLRVVVGMR-EIPSEA 239

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           K++       VI                           D  ++L  +  R  T +L+EG
Sbjct: 240 KVLNDDSRTMVI------------------------RTHDPAEVLKAVSDR--TDVLLEG 273

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRDYFG 347
           G  +A +F+ + LV+ I++Y +  ++G         G+P+  +       +     D  G
Sbjct: 274 GPTLAGAFVRAGLVNRILVYLAPTLLGGPVTAVDDVGVPTIAK----ALRWQFDGVDRVG 329

Query: 348 SDVCLEYIGKN 358
            D+ L  + ++
Sbjct: 330 PDLLLSLVPRS 340


>gi|227833015|ref|YP_002834722.1| riboflavin biosynthesis protein ribD [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227454031|gb|ACP32784.1| riboflavin biosynthesis protein ribD [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 332

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 115/359 (32%), Positives = 156/359 (43%), Gaps = 39/359 (10%)

Query: 13  AALRFS----RWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            AL  +        G TS NP V  +I+   G V+G G T   G PHAEV AL +AG++A
Sbjct: 2   RALHVAMGAGEQVRGTTSPNPPVGAVILDSAGQVVGVGATQPPGGPHAEVMALRDAGDKA 61

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           RG TA VTLEPC+H GR+ PCAQ +I+  +  V     DP  +  G     L + GI V 
Sbjct: 62  RGGTAVVTLEPCNHTGRTGPCAQALIDASVAAVYYLHPDPTPQAGGGS-TTLRRAGITVG 120

Query: 128 RMMES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
           ++    E    L  +L      R H+TLK A S D         S  ITG  ++  VH  
Sbjct: 121 QLSAPTERADALEPWLGAVALGRPHVTLKFAQSLDGFTAAVDGSSQWITGEQAREHVHRD 180

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
           R Q DAIL+G GT LAD+P LT R     L+   P R+++                    
Sbjct: 181 RTQRDAILIGTGTALADNPSLTARFPDGSLRPQQPRRVVIGSRN---------------- 224

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
             +       +  L F               ++ L  L   G   +LVEGGA +A SF+ 
Sbjct: 225 --VSHGGKTNLERLGFEHY---------ASPQEALAELYTTGARDILVEGGAGLATSFME 273

Query: 305 SRLVDSIILYRSQIVIGEG-GIPSPLEEGYL--EKNFMCVRRDYFGSDVCLEYIGKNLC 360
              VD I  Y   +V+GEG G+ +      L   + +        G D+ +EY      
Sbjct: 274 LGFVDRIQAYIGNVVLGEGRGVLTSAVSSNLAGAQRWRRCAVTELGEDLLVEYRKDEKL 332


>gi|71083736|ref|YP_266456.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|71062849|gb|AAZ21852.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 351

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 169/309 (54%), Gaps = 7/309 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  ++   GLT  NPSV C+IVK+  ++  G T + G PHAE  A++ + E   G+
Sbjct: 1   MELALNLAKARHGLTGINPSVGCVIVKNNKILSIGQTGFKGTPHAEFNAIKNSHENIEGS 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
             YVTLEPCSHYG++PPC   II+  I+ VV  V+D D +V G+ L  L  K I +   +
Sbjct: 61  KMYVTLEPCSHYGKTPPCTNIIIKNKIKEVVYGVEDIDKKVKGKTLNILKSKNILVKKDL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           ++ +   F   Y   + +   ++T KIA+S++N+I      +  I+   +    H LR +
Sbjct: 121 LKKQINKFYAPYFFNRKKNLPYVTGKIAISKNNLI--YSKDTKRISDIHTDRFTHFLRYK 178

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           +D++++   T+  DDP+L CRL GL + SP RIILD + ++  +S I KTA     II  
Sbjct: 179 NDSLMISSKTLNKDDPKLNCRLEGLSKFSPKRIILDRNLEIKKNSYIFKTANKDNTIIFY 238

Query: 250 ENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
            N    + L  +KK I +I      +  D+K +L  L   G  +LLVEGG  ++   I  
Sbjct: 239 YNAKAEVKLMLKKKGITLIKSKLNKNSFDIKSILMKLYVLGCRNLLVEGGNDLSKHIIKK 298

Query: 306 RLVDSIILY 314
           +L +   LY
Sbjct: 299 KLFNEFYLY 307


>gi|213965573|ref|ZP_03393767.1| riboflavin biosynthesis protein RibD [Corynebacterium amycolatum
           SK46]
 gi|213951732|gb|EEB63120.1| riboflavin biosynthesis protein RibD [Corynebacterium amycolatum
           SK46]
          Length = 350

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 114/361 (31%), Positives = 170/361 (47%), Gaps = 42/361 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           DA+ M+ A+   +   G T  NP + C+I+   GI +G   T   G  HAE QALE AG 
Sbjct: 15  DAQAMALAIEAGQRVRGTTYPNPPIGCVILDTAGIAVGVAGTEPVGGRHAEPQALEMAGP 74

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            A+G TA VTLEPC+H GR+PPC + +   G+ RV+  V DP+   +G   +WL  KGI 
Sbjct: 75  RAQGGTAVVTLEPCNHIGRTPPCTEALAAAGVSRVIFAVADPNPVAAGGS-EWLRYKGIE 133

Query: 126 VDRMMESEGKI--FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
           V    + +     +L  +L  Q  +R HITLK A + D         S  ITG  ++ +V
Sbjct: 134 VVEEFQRDQVAAGYLRPWLHWQRTRRPHITLKTAGTLDGFAAATDRTSQWITGEQARARV 193

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSKIIKTAL 241
           H  RA+  AI+VG GTVLAD+P LT R    +E    P+RI +    +++ D+ I     
Sbjct: 194 HADRARRQAIVVGTGTVLADNPRLTARTPDGEELSTQPLRIAIGTS-EVAADANI----- 247

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
                                +  N  +    D++  L  +   G+  +LVEGG  +A +
Sbjct: 248 ---------------------RGDNFRHIRTHDVEVALETMADMGLIDVLVEGGPRLASA 286

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE------KNFMCVRRDYFGSDVCLEYI 355
           F+ +  VD+I  Y +   +G G    P+     E        F     +  G D+ +  +
Sbjct: 287 FLEADAVDAIESYIAPAFLGAG---LPVTSANHETTITDISRFRTASVETLGDDILITAL 343

Query: 356 G 356
            
Sbjct: 344 R 344


>gi|311742370|ref|ZP_07716179.1| riboflavin biosynthesis protein RibD [Aeromicrobium marinum DSM
           15272]
 gi|311313998|gb|EFQ83906.1| riboflavin biosynthesis protein RibD [Aeromicrobium marinum DSM
           15272]
          Length = 344

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 109/357 (30%), Positives = 167/357 (46%), Gaps = 36/357 (10%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62
           S  + R M  AL  +R   G    NP+V C+++   G  I  G T   G  HAEV+AL  
Sbjct: 3   SEHEIRAMRRALDLAR-DRGSCLPNPTVGCVLLDVHGEEISAG-TTVPGGAHAEVEALTA 60

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATA VTLEPC+H+G + PC + ++  G+ RVVV   DP+  V+  G++ L + 
Sbjct: 61  AGERARGATAVVTLEPCAHHGNTGPCVEALVGAGVARVVVAETDPNP-VAAGGVEALRRA 119

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           G+ +   ++  E +    A+       R  +T K A + D +       S  ITG  ++ 
Sbjct: 120 GLEVETGILGDEVEPLNRAWRFAVTRGRPFVTWKYAATLDGLSAAPDGSSQWITGPEARR 179

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSKII 237
            V + RAQ DAI+ G G VLADDP LT R    L   +E  P+R+++     +    ++ 
Sbjct: 180 DVQVFRAQCDAIVAGTGAVLADDPRLTVRGTDDLPVARERQPLRVVV-GETTIPSYYRVF 238

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
               +AP +                          RD   +L+ LV R +  + +EGG  
Sbjct: 239 D--RVAPTL----------------------QVPSRDPAAVLSTLVERDIRHVWLEGGPR 274

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE--KNFMCVRRDYFGSDVCL 352
           +A +F N+ L+D +I Y +  ++G G      E   L   +          G D+ +
Sbjct: 275 LAGAFWNAGLIDRVIGYIAPSMLGSGRAALEGEATTLADLRPIDITDLTRIGPDIRI 331


>gi|296170729|ref|ZP_06852302.1| riboflavin biosynthesis protein RibD [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894612|gb|EFG74348.1| riboflavin biosynthesis protein RibD [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 340

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 108/365 (29%), Positives = 166/365 (45%), Gaps = 39/365 (10%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQAL 60
           P    DA  M  A+  S+   G T  NP V  +++  G V+     T   G  HAEV AL
Sbjct: 4   PAHGLDAA-MRLAIEQSKQVKGTTYPNPPVGAVVLDAGGVVVGVGGTEPAGGDHAEVLAL 62

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AG+ A G TA VTLEPC+H+GR+PPC   ++E  +  VV  V DP+   +G   +   
Sbjct: 63  RRAGDLAAGGTAVVTLEPCNHHGRTPPCVNALLEAKVATVVYAVADPNPAAAGGAARLAE 122

Query: 121 QKGIIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
               +   ++  E     L  +L +Q     H+T K A S D     A   S  I+   S
Sbjct: 123 AGVQVTGGVLADEVAGGPLREWLHKQRTGSPHVTWKYASSVDGRSAAADGTSQWISSEAS 182

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKII 237
           +  +H  RA +DAI+VG GTVLADDP LT RL    L    P+R+++    ++  ++K++
Sbjct: 183 RLDLHRRRATADAIVVGTGTVLADDPTLTARLPDGSLAARQPLRVVVGMR-EIPSEAKVL 241

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                  VI                           D  +++  L  R  T +L+EGG  
Sbjct: 242 NDDSRTMVI------------------------RTHDPMEVIKALSDR--TDVLLEGGPT 275

Query: 298 VAHSFINSRLVDSIILYRSQIVIGE-----GGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           +A +F+ + +V+ I++Y + +++G        +  P     L   F  V  D  G D+ L
Sbjct: 276 LAGAFLRAGVVNRILVYVAPMLLGGPVSAVDDVGVPTIARALRWQFDGV--DRVGPDLLL 333

Query: 353 EYIGK 357
             + +
Sbjct: 334 SLVPR 338


>gi|254822405|ref|ZP_05227406.1| riboflavin biosynthesis protein RibD [Mycobacterium intracellulare
           ATCC 13950]
          Length = 341

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 103/369 (27%), Positives = 163/369 (44%), Gaps = 40/369 (10%)

Query: 1   MPVSSFD--ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEV 57
           M VS  D     M  A+  S    G T  NP V  +I+  G  +     T   G  HAE+
Sbjct: 1   MTVSPGDGLDAAMRLAIEQSTLVKGTTYPNPPVGAVILDAGGEVVGVGGTEPAGGDHAEI 60

Query: 58  QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            AL  AG+ A G T  VTLEPC+HYG++PPC   +++  +  VV  V DP+ + +G   +
Sbjct: 61  LALRRAGDLAAGGTVVVTLEPCNHYGKTPPCVNALLDANVATVVYAVADPNPQAAGGAAR 120

Query: 118 WLSQKGIIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
                  +   ++  E     L  +L +Q     H+T K A S D     A   S  I+ 
Sbjct: 121 LEEAGVAVRSGVLADEVARGPLREWLHKQRTGLPHLTWKYASSVDGRSAAADGSSQWISS 180

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDS 234
             S+  +H  R   DAI+VG GTVLADDP LT RL    L    P+R+++    ++  ++
Sbjct: 181 EASRLDLHRRRGACDAIVVGTGTVLADDPALTARLPDGSLAARQPLRVVVGMR-EIPSEA 239

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           K++                              +     D  ++L  +  R  T +L+EG
Sbjct: 240 KVLNDDSRT------------------------MLIRTHDPAEVLKAVSDR--TDVLLEG 273

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR-----DYFGSD 349
           G  +A +F+ +  VD I+ Y +  ++G  G  + +++  +      +R      D  G D
Sbjct: 274 GPTLAGAFLRAGAVDRILAYVAPTLLG--GPVTAVDDVGVSTIARALRWQFDGIDRVGPD 331

Query: 350 VCLEYIGKN 358
           V L  + ++
Sbjct: 332 VVLSLVPRS 340


>gi|317124749|ref|YP_004098861.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Intrasporangium calvum DSM 43043]
 gi|315588837|gb|ADU48134.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Intrasporangium calvum DSM 43043]
          Length = 378

 Score =  252 bits (643), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 113/368 (30%), Positives = 165/368 (44%), Gaps = 26/368 (7%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQAL 60
           P S  DA  M  A+  +         NP V C+IV + G V+  G     G PHAE  AL
Sbjct: 8   PQSPVDAARMLRAIALAERS-PWPDPNPRVGCVIVDRAGEVVAEGWHRGAGTPHAEAAAL 66

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE ARG TAYV+LEPC+H GR+ PC+  ++E G+ RVV    DP+   +  G   L 
Sbjct: 67  ALAGERARGGTAYVSLEPCAHRGRTGPCSDALVEAGVARVVYAQADPNAE-ASGGADVLR 125

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             G+ IV  ++  E       ++      R  +T K A + D     A   S  ITG  +
Sbjct: 126 AAGVQIVGGLLADEAAALNDRWVRTITLGRPLVTWKFAATLDGRSAAADGSSQWITGPAA 185

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +  VH LRA  DAI+ G GTVLADDP LT R        P  ++     +   +      
Sbjct: 186 RADVHALRATRDAIVAGTGTVLADDPRLTVR--------PDTVVAPTDRRTGPEVAPGAA 237

Query: 240 ALLAPV------IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
           A   PV      ++V     P  A         +++   RD+  +L  L  RGV  + +E
Sbjct: 238 AAPGPVGSQPLRVVVGLRAVPPSARVHAGPG-EVLHLRTRDVHAVLAALWSRGVREVWLE 296

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGS 348
           GG  +A +F  + LVD +  Y +  ++G G  P+ + +  +      +          G+
Sbjct: 297 GGPTLAAAFWAADLVDDVYAYLAPALLGAG--PAAVGDLGIRSIDGIRRLEITDVSQVGA 354

Query: 349 DVCLEYIG 356
           DV +  + 
Sbjct: 355 DVRVHAVP 362


>gi|329946974|ref|ZP_08294386.1| riboflavin biosynthesis protein RibD [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328526785|gb|EGF53798.1| riboflavin biosynthesis protein RibD [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 400

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 93/329 (28%), Positives = 145/329 (44%), Gaps = 38/329 (11%)

Query: 26  STNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQAL---EEAGEEARGATAYVTLEPCSH 81
             NP V C+I+  DG V+  G     G  HAEV AL     AG  A+G TA VTLEPC H
Sbjct: 41  GPNPRVGCVILSADGDVLAEGHHRGAGTAHAEVDALTNLAAAGASAQGTTAVVTLEPCDH 100

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140
            GR+ PC Q ++  G+  V+   DDP    +G G   L   G+ +   +   +       
Sbjct: 101 EGRTGPCVQALLAAGVAEVIYAQDDP-TEQAGGGAATLEAAGVRVRRGLCSQDAARLNRP 159

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +       R  +T K+A + D  I  A   S  IT   ++   H LR Q DA++VG GT 
Sbjct: 160 WFLAVTRGRPMVTWKLAATLDGRIAAADGTSRWITPAAARRDAHHLRRQCDAVMVGTGTA 219

Query: 201 LADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
           LADDP LT R            P+R+++    +L   S+++                   
Sbjct: 220 LADDPALTVRDETGEPAPTHLQPLRVVVGSR-RLPPASRVLADD---------------- 262

Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
                    + +     D + +L +L  R +  +L+EGG  +A +F+ + +VD ++ Y +
Sbjct: 263 ---------HYLLLPDHDPRTVLAVLAEREIRHVLLEGGPTLATAFLRAGVVDEVVAYTA 313

Query: 317 QIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
             ++G G  P+ L +         +R  +
Sbjct: 314 PALLGAG--PAALADFGATTITDALRLRH 340


>gi|31335381|emb|CAD89884.1| riboflavin biosynthesis protein ribD [Bacillus cereus]
          Length = 209

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/207 (40%), Positives = 119/207 (57%), Gaps = 1/207 (0%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 3   DQXYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +I+  ++RVV+   D +  VSG G + L + GI +
Sbjct: 63  AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKKRLEEAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              ++E E  +    +      KR  +T+K A+S D         S  IT   ++  VH 
Sbjct: 123 TTGVLEEEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITSEDARADVHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN 212
            R   DAILVG+ TV+AD+P LT R+ 
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIP 209


>gi|291003622|ref|ZP_06561595.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 348

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 108/354 (30%), Positives = 159/354 (44%), Gaps = 34/354 (9%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALEEAGEEARG 69
           M  A+  +    G TS NP V C+++     +     T   G PHAEV AL EAGE ARG
Sbjct: 17  MRTAIGAAEGVRGTTSPNPPVGCVVLDAAGAVAGIGATRPPGGPHAEVVALREAGERARG 76

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128
            TA VTLEPCSH GR+PPC   ++  G+ RVV  V DP   V+  G   L   G+ V   
Sbjct: 77  GTAVVTLEPCSHTGRTPPCTDALLAAGVARVVHAVSDPMP-VAAGGADILRAAGVEVHSG 135

Query: 129 -MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + E      L A+L      R H+T K A + D     A   S  I+   ++ +VH LR
Sbjct: 136 LLAEEAESGPLRAWLHFARTGRPHVTWKYAATLDGRSAAADGTSKWISSPEARAEVHELR 195

Query: 188 AQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            + DA++ G GTVLADDP+LT R    GL EH P+R+++     +   ++++        
Sbjct: 196 RRMDAVVAGTGTVLADDPQLTARTPEGGLHEHQPLRVVVGNRP-VPAGARVLDDTAET-- 252

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
                                 +     D   +L  L GRG   +L+EGG  +A +F  +
Sbjct: 253 ----------------------LLLPASDPDTVLAELAGRGAVDVLLEGGPVLAGAFAAA 290

Query: 306 RLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
             +D ++ Y +  ++G G      + +            +    G DV +  + 
Sbjct: 291 GRIDRVLGYIAPALLGSGRAALGDAGVGSISQAFRLHVEQVTMVGPDVRVSAVP 344


>gi|237785569|ref|YP_002906274.1| diaminohydroxyphosphoribosylaminopyrimidinedeaminase
           [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758481|gb|ACR17731.1| diaminohydroxyphosphoribosylaminopyrimidinedeaminase
           [Corynebacterium kroppenstedtii DSM 44385]
          Length = 357

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 108/353 (30%), Positives = 165/353 (46%), Gaps = 35/353 (9%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
              M  A        G TS NP V  +I+  DG ++G+G T   G PHAEV A+ +AG+ 
Sbjct: 21  EHAMDRAAELGWEAKGTTSPNPPVGAVIIDADGRIVGQGHTQPAGGPHAEVMAVRDAGDA 80

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GATA VTLEPC+H GR+ PC   ++  GI  VV  V DP+  ++  G + L++KG+ V
Sbjct: 81  TAGATAIVTLEPCAHTGRTGPCTDVLLSAGISTVVYAVPDPNP-IAHGGHEVLAEKGLTV 139

Query: 127 DRMMESEGKIF--LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
                ++      L ++L R    R+ +TLK+A + D  +      S  IT   ++N VH
Sbjct: 140 IGGFHADEVRRGALRSWLHRIGTGRAMVTLKVAATLDGRVAAPDGTSQWITSADARNYVH 199

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALL 242
             RA  DA++VG GTV+AD+P LT R     L  H P  +I+     +  ++KI      
Sbjct: 200 RDRATRDALIVGTGTVIADNPRLTARKPDGTLYAHQPDHVIVGSRP-VPEEAKIF----- 253

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
                                +    + D  DL  ++  L  +G   LL+EGG  +A + 
Sbjct: 254 --------------------AHARSWHFDTHDLSHVIQELTQQGYVDLLIEGGPMLASAA 293

Query: 303 INSRLVDSIILYRSQIVIGEG--GIPSP-LEEGYLEKNFMCVRRDYFGSDVCL 352
           +   +VD I  Y +  ++G G   I  P +      ++F        G D+ +
Sbjct: 294 LEQGVVDQIHWYVAPSILGSGLPAIQIPRVSTLTDRRDFTIEHITQLGPDLLV 346


>gi|309810737|ref|ZP_07704545.1| riboflavin biosynthesis protein RibD [Dermacoccus sp. Ellin185]
 gi|308435368|gb|EFP59192.1| riboflavin biosynthesis protein RibD [Dermacoccus sp. Ellin185]
          Length = 340

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 96/330 (29%), Positives = 154/330 (46%), Gaps = 36/330 (10%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
           M  A + +         NP V C++V  DG+++  G     G  HAE  A+ EA   G +
Sbjct: 1   MERAAQLAALS-PRVDPNPRVGCVVVDADGVILAEGYHRGAGTWHAEAAAINEAIATGVD 59

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            RGATAYVTLEPC+H GR+P CA+ +I  G+ RVV    DP+   +  G Q L + G+ V
Sbjct: 60  LRGATAYVTLEPCAHTGRTPSCARALIRAGVARVVFGQPDPN-GAAAGGAQILREAGVAV 118

Query: 127 DRMM--ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +++    +  +     +       R  +  K A + D     +   S  ITG  ++  VH
Sbjct: 119 EQVDTLAAASRDLNADWTFSVTHARPFVRWKYASTLDGFSAASDGTSQWITGPAARVDVH 178

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSKIIKTALL 242
             RA+  AI+VG GTVLADDP+LT R    +     P+R+++     +   ++++  A  
Sbjct: 179 AQRAEHGAIVVGTGTVLADDPQLTVRDAQGRAGVQQPLRVVV-GDTPIPDTARVLDDAAS 237

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
                                    +    +    +L  L  RG+ ++ +EGG  +A  F
Sbjct: 238 T------------------------LVLPRQSPTDVLAALHARGIHAVWLEGGPTLAAVF 273

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
           + + LVD I+ Y +  ++G  G P+  + G
Sbjct: 274 LRAGLVDEIVAYLAPALLGA-GRPAAADLG 302


>gi|134098691|ref|YP_001104352.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133911314|emb|CAM01427.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 345

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 108/354 (30%), Positives = 159/354 (44%), Gaps = 34/354 (9%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALEEAGEEARG 69
           M  A+  +    G TS NP V C+++     +     T   G PHAEV AL EAGE ARG
Sbjct: 14  MRTAIGAAEGVRGTTSPNPPVGCVVLDAAGAVAGIGATRPPGGPHAEVVALREAGERARG 73

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128
            TA VTLEPCSH GR+PPC   ++  G+ RVV  V DP   V+  G   L   G+ V   
Sbjct: 74  GTAVVTLEPCSHTGRTPPCTDALLAAGVARVVHAVSDPMP-VAAGGADILRAAGVEVHSG 132

Query: 129 -MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            + E      L A+L      R H+T K A + D     A   S  I+   ++ +VH LR
Sbjct: 133 LLAEEAESGPLRAWLHFARTGRPHVTWKYAATLDGRSAAADGTSKWISSPEARAEVHELR 192

Query: 188 AQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            + DA++ G GTVLADDP+LT R    GL EH P+R+++     +   ++++        
Sbjct: 193 RRMDAVVAGTGTVLADDPQLTARTPEGGLHEHQPLRVVVGNRP-VPAGARVLDDTAET-- 249

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
                                 +     D   +L  L GRG   +L+EGG  +A +F  +
Sbjct: 250 ----------------------LLLPASDPDTVLAELAGRGAVDVLLEGGPVLAGAFAAA 287

Query: 306 RLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
             +D ++ Y +  ++G G      + +            +    G DV +  + 
Sbjct: 288 GRIDRVLGYIAPALLGSGRAALGDAGVGSISQAFRLHVEQVTMVGPDVRVSAVP 341


>gi|50954248|ref|YP_061536.1| riboflavin-specific deaminase [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50950730|gb|AAT88431.1| riboflavin-specific deaminase [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 341

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 109/354 (30%), Positives = 167/354 (47%), Gaps = 35/354 (9%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE-AR 68
           M AALR +         NP V C+++  DG  I +G     G PHAE  AL +  E  AR
Sbjct: 7   MRAALRLAANG-PAAGVNPRVGCVLLDADGRTIAKGFHRGAGTPHAEADALGKLPEGGAR 65

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
           G TA VTLEPC+H+GR+ PC++ +++ G+ RVV  + DP  R S  G + L Q G+ +  
Sbjct: 66  GTTAVVTLEPCNHWGRTGPCSEALLDAGVARVVYGIADPGER-SRGGAERLRQGGVEVTG 124

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++ +E + FL  +LT     R HIT+K A S D     A   S  ITG  ++ +VH  R
Sbjct: 125 GVLAAEIEEFLDDWLTVARLGRPHITVKWASSLDGRTAAADGTSRWITGTAARQRVHEQR 184

Query: 188 AQSDAILVGIGTVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
             SDAI+VG GTVLADDP LT R     L    P  +++     +  D+ + +       
Sbjct: 185 EASDAIVVGTGTVLADDPSLTARGDAGELLPRQPTPVVVGTRA-VPGDAAVFRHPQP--- 240

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
                                +I     DL +++  L  RG   + VEGG  ++ +F+ +
Sbjct: 241 ---------------------VIVEKTHDLVEVVADLHQRGFRRVYVEGGPTLSGAFVAA 279

Query: 306 RLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
            LVD   +Y +  ++G   +      +     ++    +  +  G D+ L  + 
Sbjct: 280 GLVDEYAIYLAPSLLGGPQLALGDIGVTTIGEQRRLRLLNVERLGGDLHLRAVP 333


>gi|303238038|ref|ZP_07324581.1| riboflavin biosynthesis protein RibD [Prevotella disiens
           FB035-09AN]
 gi|302481828|gb|EFL44880.1| riboflavin biosynthesis protein RibD [Prevotella disiens
           FB035-09AN]
          Length = 335

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 102/363 (28%), Positives = 163/363 (44%), Gaps = 45/363 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
           M     D  +M   L+ ++        NP V  +IV  DG +IG G     G  HAEV A
Sbjct: 3   MKQEDRDEMYMCRCLQLAKNGRLNAKPNPMVGAVIVSHDGKIIGEGYHVRCGEGHAEVNA 62

Query: 60  LEEAG----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
                         +T YV+LEPCSHYG++PPCA  I+  G+RR+V    DP   V GRG
Sbjct: 63  FHSVRPTDEHLLSESTIYVSLEPCSHYGKTPPCADLIVRKGVRRMVCGCVDPFSEVQGRG 122

Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG-----MAGC 169
           ++ + Q GI +   ++E E       ++ R    R +I LK A ++D  IG      A  
Sbjct: 123 IERIRQAGIEVKVGVLEQECLALNREFIVRNTLHRPYILLKWAQTEDGFIGYSAAEAAEK 182

Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229
           G++ I+   +K  VH LRA  D I+VG  T   + P+LT R       +P++I++    +
Sbjct: 183 GTLFISNGFTKMLVHKLRAAYDGIVVGRVTNDLEQPKLTVR--EWSGANPLKIVMTSKAE 240

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
              ++                            +N+  +      ++ +  +   + V S
Sbjct: 241 TMQNA---------------------------DENVLFVSSPKAMIEAIGKLERTKPVCS 273

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           ++VEGGA    SFI+  L D I +  +   I   G+ +P     L +N   V+R+++G+ 
Sbjct: 274 VIVEGGAQTLQSFIDENLFDEIRVETAPFSI-HKGVAAP----QLPQNIEVVKREFYGNS 328

Query: 350 VCL 352
           +  
Sbjct: 329 IVT 331


>gi|254775815|ref|ZP_05217331.1| riboflavin biosynthesis protein RibD [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 341

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 104/369 (28%), Positives = 166/369 (44%), Gaps = 40/369 (10%)

Query: 1   MPVSSFDA--RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEV 57
           M  S  D     M  A+  S    G T  NP V  +++     +     T   G  HAE+
Sbjct: 1   MTASLGDRLDAAMRLAIEQSNQVKGNTYPNPPVGAVVLDGRGEVVGVGGTEPAGGDHAEI 60

Query: 58  QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            AL  AG+ A G T  VTLEPC+H+G++PPC   ++E G+  VV  + DP+ + +G   +
Sbjct: 61  LALRRAGDLAAGGTVVVTLEPCNHHGKTPPCVDALLEAGVSTVVYAIADPNPQAAGGAGR 120

Query: 118 WLSQKGIIVDRMMESEGK-IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
                  +   ++  E     L  +L +Q     H+T K A S D     A   S  I+ 
Sbjct: 121 LQEAGVTVRSGLLADEVSGGPLREWLHKQRTGLPHLTWKYASSVDGRSAAADGSSRWISS 180

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDS 234
            +S+  +H  RA +DAI+VG GTVLADDP LT RL    L +  P+R+++    ++  ++
Sbjct: 181 EVSRLDLHRRRAAADAIVVGTGTVLADDPALTARLPDGTLADRQPLRVVVGMR-EIPSEA 239

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           K++       VI                           D  ++L  +  R  T +L+EG
Sbjct: 240 KVLNDDSRTMVI------------------------RTHDPAEVLKAVSDR--TDVLLEG 273

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGE-----GGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           G  +A +F+ + LV+ I++Y +  ++G        +  P     L   F  V  D  G D
Sbjct: 274 GPTLAGAFVRAGLVNRILVYLAPTLLGGPVTAVDDVGVPAIAKALRWQFDGV--DRVGPD 331

Query: 350 VCLEYIGKN 358
           + L  + ++
Sbjct: 332 LLLSLVPRS 340


>gi|330943560|gb|EGH45897.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 245

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 100/238 (42%), Positives = 138/238 (57%), Gaps = 11/238 (4%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            ++ D  +M+ AL  +R  +  T  NP V C+IV++G ++G G  A  G PHAEV AL +
Sbjct: 5   QAALDVHYMARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQ 64

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH GR+PPCA  +IE G+ RVV  + DP+  VSGRGL  L   
Sbjct: 65  AGELARGATAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNA 124

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++ESE +     +L R      ++ +K+A+S D    MA   S  ITG  +++
Sbjct: 125 GIGVQCGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARS 184

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFK 229
            V  LRAQS  +L G  TVLAD   LT R + L             +P+R+++D   +
Sbjct: 185 AVQRLRAQSSVVLSGADTVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLR 242


>gi|269956518|ref|YP_003326307.1| riboflavin biosynthesis protein RibD [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269305199|gb|ACZ30749.1| riboflavin biosynthesis protein RibD [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 350

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 111/352 (31%), Positives = 162/352 (46%), Gaps = 37/352 (10%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
           M  AL  +         NP V C+++  DG VIG G     G PHAEV AL +A   G +
Sbjct: 16  MDRALTLAARGPAH-GPNPRVGCVLLAPDGTVIGEGWHRGAGTPHAEVAALHDAHTRGCD 74

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
            RGATA VTLEPC+H GR+ PCAQ +++ GI  VV  +DDP  R  G G   L   GI +
Sbjct: 75  PRGATAVVTLEPCNHTGRTGPCAQALVDAGITDVVHAIDDPGARSGG-GADHLRAHGIRV 133

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +  +     +H +       R  +TLK A + D  +  +   S  ITG  ++   H 
Sbjct: 134 TSEVRAAAALELVHHWHHAVTAGRPWVTLKTATTLDGRVAASDGTSKWITGPEAREHAHS 193

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           +RAQ DAI V  GT LADDP LT R    GL  H P+R+++  H  L   +++       
Sbjct: 194 VRAQVDAIAVTTGTALADDPALTARTPDGGLAAHQPLRVVV-GHRDLPPGARL------- 245

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
                            R  +   ++    D+  +L  L  R +  LLVEGG A+A + +
Sbjct: 246 -----------------RDDDAETLHLRTHDVHHVLAALHDREIRHLLVEGGPALATALL 288

Query: 304 NSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +  VD +  Y + +++G+G     P  +        +        G D+ +
Sbjct: 289 AADAVDELHAYIAPVILGDGRPAVAPFGVTTLAAAPRWHTTDTHRLGDDILV 340


>gi|145348534|ref|XP_001418702.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578932|gb|ABO96995.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 429

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 94/383 (24%), Positives = 150/383 (39%), Gaps = 31/383 (8%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
           V+  DA  M+     +R   G+ + +P  AC + + DG V+     A  G   AE+   +
Sbjct: 51  VTPRDAEIMTRVCELARAREGIAAPHPLSACAVTRGDGDVVVEATHAGQGSTRAEIACAD 110

Query: 62  EAGEEARGATA--------YVTLEPC-SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           E     RGAT         YV LEP            + +   G  R VV +  P   + 
Sbjct: 111 EM--RRRGATLNSSDRGTVYVNLEPAHGEVAGETRSVEALAATGATRAVVGMLHPLPGLR 168

Query: 113 GRGLQWLSQKGIIVDRMMES----------EGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           GR ++ L ++GI V  +               +    A L R          K A++ D 
Sbjct: 169 GRAVRALRERGIEVCVLEGEAEGFEGEAARACRETNEALLYRVATGLPFSVYKYAMTLDG 228

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222
            I      S  +TG  ++  V   R ++DA++VG GTV  D+P LTCR        P R+
Sbjct: 229 KIATDTGHSSWVTGAEAREMVFRERKRADAVVVGGGTVRKDNPRLTCREE--TGFQPARV 286

Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTEND-DPVLALAFRKKNINIIYCDCRDLKKLLTI 281
           +L     L  D+K+     +AP I+ T     P    A R K + ++  D          
Sbjct: 287 VLTRSLDLPEDAKLWNVRGVAPTIVCTTKGVKPEFQNALRAKGVEVVEFDELTPLAAAQY 346

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-IPSPLEEGYLEK---- 336
           +  RG      E G  +A   + S +   ++ + +  ++G G   P+PL    +E     
Sbjct: 347 MFKRGFLRCFWECGGGLAAPAMKSGVFHEVLAFIAPKLVGGGALAPTPLGNLGIEAMHDA 406

Query: 337 -NFMCVRRDYFGSDVCLEYIGKN 358
                VR + +G D+ +     N
Sbjct: 407 LPLSGVRLEIYGRDILIRGYVPN 429


>gi|288800423|ref|ZP_06405881.1| riboflavin biosynthesis protein RibD [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332636|gb|EFC71116.1| riboflavin biosynthesis protein RibD [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 341

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 98/365 (26%), Positives = 152/365 (41%), Gaps = 58/365 (15%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             ++   R+M   +  +         NP V  +IV DG +IG G     G  HAEV A  
Sbjct: 28  TTNATHERYMQRCIDLALNGKEGAKPNPMVGSVIVVDGRIIGEGYHIEYGKAHAEVNAFA 87

Query: 62  EAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
               +       AT YV LEPCSH+G++PPCA  II  G+++VVV   DP   V GRG++
Sbjct: 88  SVDAKDEHLLPKATLYVNLEPCSHFGKTPPCADLIISKGVKKVVVGCVDPYSEVRGRGIE 147

Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
            L + G+ ++  ++E E       ++T    +R +I LK A + D  I      +  I+ 
Sbjct: 148 RLRKAGVKVLVGVLEKECLFLNRFFITSNTHQRPYIILKWAQTLDGFIDC-DGEATAISI 206

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
             +   VH LRA+SDAILVG  T   + P L  R        P +++L            
Sbjct: 207 PFTSMLVHKLRAESDAILVGNNTEKKERPRLNVR--HWSGQDPKKVVLSSK--------- 255

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
                                                 LK+LL+ L    + SL+VEGG 
Sbjct: 256 ------------------------------------TTLKELLSSLHAENIQSLMVEGGL 279

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
              +SFI + L D I +  +   +G  G  +P     +  N   +  + +  +    ++ 
Sbjct: 280 KTHNSFIEADLWDEIHIETAPFTVG-NGTHAP----QIPANAKLIEHEDWDGNQTFVFVK 334

Query: 357 KNLCL 361
           ++  L
Sbjct: 335 ESGLL 339


>gi|315607126|ref|ZP_07882130.1| riboflavin biosynthesis protein RibD [Prevotella buccae ATCC 33574]
 gi|315251180|gb|EFU31165.1| riboflavin biosynthesis protein RibD [Prevotella buccae ATCC 33574]
          Length = 322

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 103/361 (28%), Positives = 156/361 (43%), Gaps = 60/361 (16%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D +FM   L+ +R        NP V  +IV  DG +IG G     G  HAEV A      
Sbjct: 9   DEKFMRRCLQLARNGRQNAKPNPMVGAVIVSPDGRIIGEGYHVRCGEGHAEVNAFASVCP 68

Query: 66  EARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           E       +T YV+LEPCSH+G++PPCA  I+  G+RRVV    DP   VSGRG++ + +
Sbjct: 69  EDEALLHESTIYVSLEPCSHFGKTPPCADLIVRKGVRRVVCGCIDPFAEVSGRGVERIRK 128

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +   ++E E       ++      R +ITLK A + D  +      ++PI+   +K
Sbjct: 129 AGIEVTVGVLEQECLTLNRRFIVCNERDRPYITLKWAQTADGFLDDH-GRALPISSPFTK 187

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              H LRA++DAILVG  T   + P L  R        P RI+L     ++         
Sbjct: 188 MLSHKLRAENDAILVGRVTEEREHPRLNVR--EWSGPDPERIVLGHGASVT--------- 236

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
                                                +L  L      SLLVEGGA    
Sbjct: 237 ------------------------------------GILARLYEEKKQSLLVEGGAQTLQ 260

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
           SF+++ L D + +  + I +G+ G P+P     L  + +   +  + ++V + + G    
Sbjct: 261 SFLDADLWDELRVETAPITVGD-GTPAP----SLPDSAVPTGQQIYDANV-IRWYGHESS 314

Query: 361 L 361
           +
Sbjct: 315 M 315


>gi|295839977|ref|ZP_06826910.1| riboflavin biosynthesis protein RibD [Streptomyces sp. SPB74]
 gi|295827729|gb|EFG65559.1| riboflavin biosynthesis protein RibD [Streptomyces sp. SPB74]
          Length = 364

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 115/353 (32%), Positives = 168/353 (47%), Gaps = 14/353 (3%)

Query: 12  SAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
             A+  +   +G T  NP V C+++   G V G G  +    PHAE+ AL  A E +   
Sbjct: 11  REAIALAARGLGRTRHNPVVGCVVLDASGEVAGSGWHSGAAVPHAEIHALARAEELSGVD 70

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TA VTLEPC H GR+ PC++ +IE G+RRVV  V DP    +  G   L   G+ +   +
Sbjct: 71  TALVTLEPCDHTGRTGPCSRALIEAGVRRVVYAVADP-TDQATGGAGTLRAAGLDVEHGL 129

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E+E      A+LT     R H+T K A S D     A   S  IT   ++  VH LRA 
Sbjct: 130 LEAEAADVNAAWLTSARLGRPHVTWKYAASLDGRTAAADGTSRWITSPEARADVHRLRAT 189

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTALLAPVIIV 248
            DA+LVG GT  ADDP L  R        P+R++LD     +   ++++  A  AP +I 
Sbjct: 190 CDAVLVGSGTARADDPHLAVR-GVPGAPQPLRVVLDTEGTAVRAGARVLDDA--APTLIA 246

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
             +D P  A       +        DL  LL  L  R V  +L+EGGA +A SF+ +   
Sbjct: 247 LADDAPAPAHGAELLRLPRAAHGGLDLTALLAALYARDVRGVLLEGGARLAGSFVAAGCA 306

Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356
           D ++ Y + +++G G  P+ L    +      +R D       G D+ +  + 
Sbjct: 307 DRVVGYLAPVLLGAG--PAALTGAGITTLTAALRLDVRDSTRLGPDLRITAVP 357


>gi|183982231|ref|YP_001850522.1| bifunctional riboflavin biosynthesis protein RibG [Mycobacterium
           marinum M]
 gi|183175557|gb|ACC40667.1| bifunctional riboflavin biosynthesis protein RibG [Mycobacterium
           marinum M]
          Length = 339

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 105/360 (29%), Positives = 168/360 (46%), Gaps = 40/360 (11%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
              M  A+  S    G T  NP V  +IV  +G V+G G T   G  HAEV AL +AG  
Sbjct: 10  EEAMRLAIEQSMLVKGTTYPNPPVGAVIVDQEGRVVGIGGTQPSGGDHAEVVALRKAGGL 69

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GA A VT+EPC+H+G++PPC   +IE  +  V+  V DP+  ++G G   LS  G+ V
Sbjct: 70  AAGAIAVVTMEPCNHFGKTPPCVNALIEARVGTVIYGVADPN-GIAGGGAGRLSAAGLQV 128

Query: 127 DRMMESEGKI--FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
              + ++      L  +L +Q     H+T K A S D     A   S  I+   ++  +H
Sbjct: 129 RSGVLADHVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAARADLH 188

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
             RA SDAI+VG GTVL DDP LT RL    L    P+R+++     +  ++K++     
Sbjct: 189 RRRAISDAIVVGTGTVLVDDPTLTARLSDGSLAAEQPLRVVVGKR-DIPPEAKVLNDDAR 247

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
                                    +     +  ++L  L  R  T +L+EGG  +A +F
Sbjct: 248 T------------------------MMIKTHEPVEVLRALSDR--TDVLLEGGPTLAGAF 281

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR-----DYFGSDVCLEYIGK 357
           + +  ++ I+ Y + I++G  G  + +++  +      +R      +  G D+ L  + +
Sbjct: 282 LRAGAINRILAYVAPILLG--GPVTAVDDVGVSSIAHALRWQFDGVERCGPDLLLSLVSR 339


>gi|300858536|ref|YP_003783519.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Corynebacterium pseudotuberculosis FRC41]
 gi|300685990|gb|ADK28912.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302206248|gb|ADL10590.1| Riboflavin biosynthesis protein ribD [Corynebacterium
           pseudotuberculosis C231]
 gi|302330806|gb|ADL21000.1| Riboflavin biosynthesis protein ribD [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276490|gb|ADO26389.1| Riboflavin biosynthesis protein ribD [Corynebacterium
           pseudotuberculosis I19]
          Length = 373

 Score =  249 bits (635), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 104/351 (29%), Positives = 151/351 (43%), Gaps = 38/351 (10%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGAT 71
            A+       G TS NP V   IV   G ++G G T   G PHAEV AL+ AG  ARGAT
Sbjct: 54  EAVAQGELAQGSTSPNPPVGAAIVSAQGDIVGVGYTQPVGGPHAEVMALQSAGGAARGAT 113

Query: 72  AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
             VTLEPC H GR+ PC Q +++ GI  VV C+ DP  R  G G ++L + G+ V  +  
Sbjct: 114 IVVTLEPCQHQGRTGPCTQALLDAGIAEVVYCLKDPG-RKEGGGHEFLQKNGVRVTFL-- 170

Query: 132 SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191
                 L  +L  Q  +R ++  K A + D  I      S  IT  ++++     R   D
Sbjct: 171 DVPVRALRPWLQAQKLQRPYVVGKSAHTVDGFIAAVDGTSQWITSEVARSYAISQRKLFD 230

Query: 192 AILVGIGTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           AI+VG GT LAD+P LT R    +E    P+R+++     L  ++ +       P ++  
Sbjct: 231 AIVVGTGTALADNPRLTARGPKGEETPWQPLRVVIGSRA-LPENAHLSD-----PTVV-- 282

Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
                                   DL   L  L  +G   +L+EGGA +  S     ++D
Sbjct: 283 ---------------------KFLDLVVALRYLWDKGCRYVLLEGGAGLITSAFERDIID 321

Query: 310 SIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
               Y + + +G G      S         +    R +  G DV    +  
Sbjct: 322 EFHDYSAPLFLGSGKNALDHSISSTLSTAVHMHTQRVELLGEDVLRILVRD 372


>gi|281424669|ref|ZP_06255582.1| riboflavin biosynthesis protein RibD [Prevotella oris F0302]
 gi|281401039|gb|EFB31870.1| riboflavin biosynthesis protein RibD [Prevotella oris F0302]
          Length = 318

 Score =  249 bits (635), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 101/335 (30%), Positives = 144/335 (42%), Gaps = 40/335 (11%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M   L+ +         NP V  +IV    +IG G     G  HAEV A      E 
Sbjct: 4   EYYMKRCLQLAENGRQNAKPNPMVGAVIVAHDRIIGEGYHVRCGEGHAEVNAFASVRPED 63

Query: 68  R----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
                 AT YV+LEPCSHYG++PPCA  II  GI+R V    DP  +V GRG+Q +   G
Sbjct: 64  EKLLPEATIYVSLEPCSHYGKTPPCADLIISKGIKRCVCGCVDPFAKVQGRGIQRMRDAG 123

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +V  +ME E       ++T     R +I LK A + +  I       + ++  +++  
Sbjct: 124 IEVVVDVMEQECLALNRRFITFNALHRPYILLKWAQTANGFISKKD-SPLQLSTPVTQML 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LRA+++A+LVG  T L D P L  R       +P RI+L P                
Sbjct: 183 VHQLRAENEAVLVGHTTFLTDHPRLDVR--QWSGRNPERIVLSPTM-------------- 226

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
                         A   R K   +       + +++  L      SL+VEGG     +F
Sbjct: 227 -------------AARKERPKGWTVAAT----IDEIIAHLYAEKKQSLVVEGGRKTLQAF 269

Query: 303 INSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEK 336
           I   L D I +  + I+I EG   P      ++EK
Sbjct: 270 IERGLWDEIRVETAPIMITEGVAAPHFPTHAHIEK 304


>gi|260753016|ref|YP_003225909.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552379|gb|ACV75325.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 323

 Score =  249 bits (635), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 115/364 (31%), Positives = 170/364 (46%), Gaps = 50/364 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
           M     D R+M AA+       GLT+ +PSV C+IV KD  +IGRG T  GG PHAE  A
Sbjct: 1   MTHLENDIRWMQAAIALGERSKGLTAPSPSVGCIIVNKDNQIIGRGWTQSGGRPHAEAMA 60

Query: 60  LEEAGEEARGATAYVTLEPCSH-YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           L +  +  +GAT YVTLEPC+H   R P C+  ++     RVV+   DPD R +G+G+  
Sbjct: 61  LSQC-QSLKGATVYVTLEPCAHKSNRGPTCSDSLVAAQPERVVIACRDPDHRTNGQGISK 119

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           +   GI +   ++E +    +  + +RQ++ R ++TLK+A S D  I +    S  ITG 
Sbjct: 120 MVAAGIKVECGLLEKQAAQSMSGFFSRQLKARPYVTLKMATSLDGCIALENGESQWITGE 179

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            ++   HL R +S+ I+VG  T+  D P L  RL  L + SP + +L  H ++       
Sbjct: 180 RARAHAHLERMRSELIVVGRKTLEFDKPSLNVRLQSLGDRSPKKAVL-GHGEIPSG---W 235

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                   II T  D                                     +L+EGGA 
Sbjct: 236 IGLREPTDIIKTTAD------------------------------------HVLIEGGAK 259

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352
            A +F+   LVD I+LYR+ I+IG  G+ +  + G          +    R   G+D   
Sbjct: 260 TAAAFLKGDLVDRILLYRAPILIG-KGLHALADIGLTHLSEAHHRWHLKERRTLGNDQLE 318

Query: 353 EYIG 356
            Y+ 
Sbjct: 319 AYLR 322


>gi|239978360|ref|ZP_04700884.1| putative riboflavin/cytosine deaminase [Streptomyces albus J1074]
 gi|291450256|ref|ZP_06589646.1| riboflavin biosynthesis protein RibD [Streptomyces albus J1074]
 gi|291353205|gb|EFE80107.1| riboflavin biosynthesis protein RibD [Streptomyces albus J1074]
          Length = 378

 Score =  248 bits (634), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 119/369 (32%), Positives = 176/369 (47%), Gaps = 21/369 (5%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  AL  +   +G TS NP V C+++   G   G G     G PHAE+ AL EAG+ ARG
Sbjct: 14  MRRALELAARGLGTTSPNPVVGCVVLDAHGEQAGEGWHRRAGGPHAEIHALREAGDRARG 73

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            TA VTLEPC+H GR+ PCAQ +++ GI RVV  V DPD    G      +        +
Sbjct: 74  GTALVTLEPCNHTGRTGPCAQALLDAGISRVVYAVADPDPLAEGGAATLRAAGAETSQGL 133

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           + +E +    A+LT     R H+T K A + D     A   S  IT   ++  VH LRA+
Sbjct: 134 LAAEAEQVNAAWLTSVRRGRPHVTWKYAATLDGRTAAADSTSRWITSAEARADVHRLRAE 193

Query: 190 SDAILVGIGTVLADDPEL-----TCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTALLA 243
           +DA+LVG GT  ADDP L         +      P+RI+LD     +   ++++  A  A
Sbjct: 194 ADAVLVGAGTARADDPHLAARLPAPAPDAPAPVQPLRIVLDSDATAVRPGARVLDDA--A 251

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVA 299
           P ++    D     L     ++ ++     +    L  LL  L  R V S+L+EGGA +A
Sbjct: 252 PTLVAVAGDADARHLEGHP-HVELLRLPRTNGGLDLTALLAALHARSVRSVLLEGGARLA 310

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEY 354
            +F+ +  VD ++ Y +  ++G G  P  L  G +      +R D       G D+ +  
Sbjct: 311 GAFVAAGAVDRVVGYLAPALLGAG--PQVLTGGGISTIADALRLDITDARRIGPDLRITA 368

Query: 355 IGKNLCLQE 363
           +      +E
Sbjct: 369 VPATSLTKE 377


>gi|258647712|ref|ZP_05735181.1| riboflavin biosynthesis protein RibD [Prevotella tannerae ATCC
           51259]
 gi|260852547|gb|EEX72416.1| riboflavin biosynthesis protein RibD [Prevotella tannerae ATCC
           51259]
          Length = 322

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 108/328 (32%), Positives = 150/328 (45%), Gaps = 45/328 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR- 68
           +M   LR +         NP V  +IV    +IG G  A  G  HAEV A+     + R 
Sbjct: 7   YMHRCLRLAENGRLSAPPNPMVGAVIVYKDRIIGEGYHAKCGQAHAEVNAIASVRPDDRP 66

Query: 69  ---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
               +T YV+LEPC+HYGR+PPCA+ I+  GI RVVV  +DP  +V GRG+  L   G+ 
Sbjct: 67  HLQDSTLYVSLEPCAHYGRTPPCARLILNTGIPRVVVGCEDPFDKVEGRGITMLRDGGVQ 126

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG----MAGCGSVPITGFISK 180
           +   ++E E +     + T   + R +ITLK A S D  +           V ++   S 
Sbjct: 127 VTVGVLEQECRELNRHFFTFHTKHRPYITLKWASSADGFVDSWREDEAAAPVKLSNAHSL 186

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             VH LRA   AILVG GT+ AD P+L  R       +P R++L                
Sbjct: 187 MDVHRLRAYHQAILVGHGTLKADRPQLNVR--DWVGSNPQRLVLGH-------------- 230

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
                  V E++ P    A+             D+  LL  L  +G+ SLLVEGG     
Sbjct: 231 -------VGEDELPAGFTAYA------------DVATLLQSLTEQGIQSLLVEGGPQTQR 271

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSP 328
           +FI   L D  I   S + +G  G+P+P
Sbjct: 272 AFIERGLWDEAIEELSPLTLGS-GVPAP 298


>gi|118617420|ref|YP_905752.1| bifunctional riboflavin biosynthesis protein RibG [Mycobacterium
           ulcerans Agy99]
 gi|118569530|gb|ABL04281.1| bifunctional riboflavin biosynthesis protein RibG [Mycobacterium
           ulcerans Agy99]
          Length = 339

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 105/360 (29%), Positives = 168/360 (46%), Gaps = 40/360 (11%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
              M  A+  S    G T  NP V  +IV  +G V+G G T   G  HAEV AL +AG  
Sbjct: 10  EEAMRLAIEQSMLVKGTTYPNPPVGAVIVDQEGWVVGIGGTQPSGGDHAEVVALRKAGGL 69

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GA A VT+EPC+H+G++PPC   +IE  +  V+  V DP+  ++G G   LS  G+ V
Sbjct: 70  AAGAIAVVTMEPCNHFGKTPPCVNALIEARVGTVIYGVADPN-GIAGGGAGRLSAAGLQV 128

Query: 127 DRMMESEGKI--FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
              + ++      L  +L +Q     H+T K A S D     A   S  I+   ++  +H
Sbjct: 129 RSGVLADHVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAARADLH 188

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
             RA SDAI+VG GTVL DDP LT RL    L    P+R+++     +  ++K++     
Sbjct: 189 RRRAISDAIVVGTGTVLVDDPTLTARLSDGSLAAEQPLRVVVGKR-DIPPEAKVLNDDAR 247

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
                                    +     +  ++L  L  R  T +L+EGG  +A +F
Sbjct: 248 T------------------------MMIKTHEPVEVLRALSDR--TDVLLEGGPTLAGAF 281

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR-----DYFGSDVCLEYIGK 357
           + +  ++ I+ Y + I++G  G  + +++  +      +R      +  G D+ L  + +
Sbjct: 282 LRAGAINRILAYVAPILLG--GPVTAVDDVGVSSIAHALRWQFDGVERCGPDLLLSLVSR 339


>gi|213579885|ref|ZP_03361711.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 301

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 98/302 (32%), Positives = 145/302 (48%), Gaps = 18/302 (5%)

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI +   +
Sbjct: 1   TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAVSHGL 60

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M SE +     +L R      ++ LK+  S D    MA   S  IT   ++  V  LRAQ
Sbjct: 61  MMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQRLRAQ 120

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKIIK 238
           S AIL    TVLADDP LT R   L               P+RI++D   +++   +I++
Sbjct: 121 SHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAHRIVQ 180

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
                  I  T+ D      + R  ++   +    DL  L+  L  + + S+ VE G  +
Sbjct: 181 QPGE-TWIARTQEDSHAWPDSVRTISV-PAHNGHLDLVVLMMQLGRQQINSIWVEAGPGL 238

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           A + + + LVD +I+Y +  ++G           LE+      F      + G DVCL  
Sbjct: 239 AGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPDVCLHM 298

Query: 355 IG 356
           + 
Sbjct: 299 VS 300


>gi|121997691|ref|YP_001002478.1| riboflavin biosynthesis protein RibD [Halorhodospira halophila SL1]
 gi|121589096|gb|ABM61676.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Halorhodospira halophila SL1]
          Length = 371

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 112/361 (31%), Positives = 176/361 (48%), Gaps = 15/361 (4%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D R+M+ A+R +         NP V C++V+DG V+        G PHAE  AL+ AG
Sbjct: 8   PDDPRWMARAIRRAAAVCPPPHPNPRVGCVLVRDGSVLAEAAHEQAGGPHAEAAALQAAG 67

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
             A GATAYVTLEPC+HYGR+PPCA+ +I+ G+ RVVV   DP+ RV+G G+  L   G+
Sbjct: 68  GAAHGATAYVTLEPCAHYGRTPPCARALIDAGVSRVVVGHRDPNPRVAGGGIAQLEAAGV 127

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            + + ++ ++ +     +L R    R  + +K+A S D    MA   S  IT   ++  V
Sbjct: 128 AVTEGVLAADAEALNRGFLRRMAGGRPWVRVKLAASLDGRTAMASGESHWITSAAARRDV 187

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCR---LNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
           H  RA++ A+L G+GTV ADDP L  R        E  P R++LDP       + + +  
Sbjct: 188 HRGRAEAAAVLTGVGTVRADDPRLDARDVEPAVPAERQPQRVVLDPRLTTPPHAALFQ-- 245

Query: 241 LLAPVIIVTEND-DPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGG 295
              PV+I      +   A A R     ++    ++    L  +L  L  R +  + VE G
Sbjct: 246 APGPVLIGHAEYVNEARARALRSCGAELLPLPLQEGGLDLAAVLDALAAREINEVWVEAG 305

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVC 351
             +A S++     D +I+Y +  ++G+   P      +E     +          G ++ 
Sbjct: 306 PTLAGSWVRGGWADELIVYTAPHLMGDAARPLLALPGIETMAQRQPLAFSDVRRVGEEIR 365

Query: 352 L 352
           +
Sbjct: 366 I 366


>gi|41407234|ref|NP_960070.1| RibG [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395585|gb|AAS03453.1| RibG [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 341

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 105/371 (28%), Positives = 166/371 (44%), Gaps = 44/371 (11%)

Query: 1   MPVSSFDA--RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEV 57
           M  S  D     M  A+  S    G T  NP V  +++     +     T   G  HAE+
Sbjct: 1   MTASLGDRLDAAMHLAIEQSNQVKGNTYPNPPVGAVVLDGRGEVVGVGGTEPAGGDHAEI 60

Query: 58  QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            AL  AG+ A G T  VTLEPC+H+G++PPC   ++E G+  VV  V DP+ + +G   +
Sbjct: 61  LALRRAGDLAAGGTVVVTLEPCNHHGKTPPCVDALLEAGVGTVVYAVADPNPQAAGGAGR 120

Query: 118 WLSQKGIIVDRMMESEGK-IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
                  +   ++  E     L  +L +Q     H+T K A S D     A   S  I+ 
Sbjct: 121 LQEAGVTVRSGLLADEVSGGPLREWLHKQRTGLPHLTWKYASSVDGRSAAADGSSRWISS 180

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDS 234
             S+  +H  RA +DAI+VG GTVLADDP LT RL    L +  P+R+++     LS ++
Sbjct: 181 EASRLDLHRRRAAADAIVVGTGTVLADDPALTARLPDGTLADRQPLRVVVGMREILS-EA 239

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           K++       VI                           D  ++L  +  R  T +L+EG
Sbjct: 240 KVLNEESRTMVI------------------------RTHDPAEVLKAVSDR--TDVLLEG 273

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRDYFG 347
           G  +A +F+ + LV+ I++Y +  ++G         G+P+  +       +     D  G
Sbjct: 274 GPTLAGAFVRAGLVNRILVYLAPTLLGGPVTAVDDVGVPTIAK----ALRWQFDGVDRVG 329

Query: 348 SDVCLEYIGKN 358
            D+ L  + ++
Sbjct: 330 PDLLLSLVPRS 340


>gi|331697233|ref|YP_004333472.1| riboflavin biosynthesis protein RibD [Pseudonocardia dioxanivorans
           CB1190]
 gi|326951922|gb|AEA25619.1| riboflavin biosynthesis protein RibD [Pseudonocardia dioxanivorans
           CB1190]
          Length = 385

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 110/349 (31%), Positives = 160/349 (45%), Gaps = 40/349 (11%)

Query: 18  SRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTL 76
           S    G TS NP V C+++ +DG V G G TA  G PHAEV AL EAGE ARG TA VTL
Sbjct: 32  SARVHGTTSPNPPVGCVVLDRDGRVAGTGATAPPGGPHAEVAALAEAGERARGGTAVVTL 91

Query: 77  EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI 136
           EPC+H+GR+PPC   +   GI  V   V DP+  V+  G   L   G+ V          
Sbjct: 92  EPCAHHGRTPPCTDALRAAGIVAVHAGVADPNP-VAAGGAAVLRAAGVDVTVGTLGAEVA 150

Query: 137 --FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
              L  +L      R H+T K A + D     A   S  ITG  ++ +VH LRA SDA++
Sbjct: 151 AGPLRGWLHATRTGRPHVTWKFAATLDGRSAAADGSSRWITGPAARARVHALRATSDAVV 210

Query: 195 VGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252
           VG GT LADDP LT R          P+R+++    +                       
Sbjct: 211 VGTGTALADDPALTARDAAGTPVPRQPLRVLV--GLRHP--------------------- 247

Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
                        ++++    D  ++L  L  RGV  +L+EGG  +A +F+ +  VD ++
Sbjct: 248 ----RPGSHLDAPDVLHLRTHDPDEVLAALHARGVVDVLLEGGPRLAGAFLAAGRVDRVL 303

Query: 313 LYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356
            + +  ++G G  P+ L +  +              +  G D+ ++ + 
Sbjct: 304 AHLAPALLGAG--PAALADAGVGTIADILRLQVASVELVGGDLVVDAVP 350


>gi|326693482|ref|ZP_08230487.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Leuconostoc argentinum KCTC 3773]
          Length = 352

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 97/344 (28%), Positives = 159/344 (46%), Gaps = 23/344 (6%)

Query: 24  LTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE--AGEEARGATAYVTLEPCSH 81
            T  NP V  +IVKD  V+  G     G  HAE+ A     A  +A+G T YVTLEPC+ 
Sbjct: 21  QTFENPRVGAVIVKDNQVLAVGWHERFGGAHAEINAFHHLGAAHDAQGGTLYVTLEPCAV 80

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
            G+   CA+ I + G+ RVV+   DP+    G G+Q L   GI V  +   + +    A+
Sbjct: 81  RGKVAACAETIRDWGLARVVIGDLDPNPTTHGLGVQKLRAAGISVVVLDTDDSRQLNPAF 140

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
                + + +I LK A S +  +         IT  ++   VH  RA+  AI+VG  T +
Sbjct: 141 YQYHEQHQPYIQLKSAQSHNGYVSAVRGQRSKITDAVADLDVHRQRARHSAIIVGSETWV 200

Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
            D P LT R   L    P R+++    +L+ +        L   ++ TEN     A   +
Sbjct: 201 IDQPRLTVRDVMLTHQQPQRVVIYRRGRLAHEP----ATRLKDWLVYTEN-----AQFAQ 251

Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           ++N+ ++      L  ++  L  +G+ S++VEGG  +  SF+ ++L    ++Y +  ++ 
Sbjct: 252 QENVELMTAG---LPGVMADLGRKGMQSVMVEGGPILITSFLQAQLWHECLIYTADRLLP 308

Query: 322 EG--GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQE 363
           +G  GI  P     +++     R+ Y   +V         CLQ 
Sbjct: 309 DGVRGIVLPQLPDDIQRIGHTQRQRYVNQEVAT-------CLQA 345


>gi|299143100|ref|ZP_07036209.1| riboflavin biosynthesis protein RibD [Prevotella oris C735]
 gi|298575428|gb|EFI47325.1| riboflavin biosynthesis protein RibD [Prevotella oris C735]
          Length = 318

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 101/335 (30%), Positives = 145/335 (43%), Gaps = 40/335 (11%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M   L+ +         NP V  +IV    +IG G     G  HAEV A      E 
Sbjct: 4   EYYMKRCLQLAENGRQNAKLNPMVGAVIVAHDRIIGEGYHVRCGEGHAEVNAFASVRPED 63

Query: 68  R----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
                 AT YV+LEPCSHYG++PPCA  II  GI+R V    DP  +V GRG+Q +   G
Sbjct: 64  EKLLPEATIYVSLEPCSHYGKTPPCADLIISKGIKRCVCGCVDPFAKVQGRGIQRMRDAG 123

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +V  +ME+E       ++T     R +I LK A + +  I       + ++  +++  
Sbjct: 124 IEVVVGVMEAECLALNRRFITFNALHRPYILLKWAQTANGFISKKD-SPLQLSTPVTQML 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           VH LRA+++AILVG  T L D P L  R       +P RI+L P                
Sbjct: 183 VHQLRAENEAILVGHTTFLTDHPRLDVR--QWSGRNPERIVLSPTM-------------- 226

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
                         A   R +   +       + +++  L      SL+VEGG     +F
Sbjct: 227 -------------AARKERPEGWTVAAT----IDEVIAHLYAEKKQSLIVEGGRKTLQAF 269

Query: 303 INSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEK 336
           I   L D I +  + I+I EG   P      ++EK
Sbjct: 270 IERGLWDEIRVETAPIMITEGVAAPHFPTHAHIEK 304


>gi|169629892|ref|YP_001703541.1| bifunctional riboflavin biosynthesis protein RibG [Mycobacterium
           abscessus ATCC 19977]
 gi|169241859|emb|CAM62887.1| Probable bifunctional riboflavin biosynthesis protein RibG
           [Mycobacterium abscessus]
          Length = 340

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 118/361 (32%), Positives = 169/361 (46%), Gaps = 39/361 (10%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAG 64
            D   M  A+R +    G T  NP V  +I+   G V G G T   G  HAEV AL  AG
Sbjct: 7   LDEA-MDLAIRAAEEVKGSTYPNPPVGAVILDAAGQVAGVGGTRPPGQEHAEVVALAGAG 65

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
             ARG TA VTLEPC+H GR+ PC   +   G+ RVV  V DP+ + +G G   L   GI
Sbjct: 66  AAARGGTAVVTLEPCNHQGRTGPCVDALAAAGVSRVVYAVADPNPQAAG-GAARLRTLGI 124

Query: 125 IVDRMMESEGK--IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
            V   + S+      L  +L +Q   R H+T K   S D         S  IT   S+  
Sbjct: 125 EVLDGLASDRVSAGPLREWLHKQRTGRPHVTWKYGASVDGRSAANDGTSQWITSEQSRAD 184

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTA 240
           VH  RA +DA+LVG GTV ADDP+LT R     L  H P+R+++    ++S D+K++   
Sbjct: 185 VHRRRAFADAVLVGTGTVFADDPQLTARTPDNELVPHQPLRVVVGMR-EVSSDAKVLNDD 243

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
               VI                           D  ++L  L  R  T +++EGG  +A 
Sbjct: 244 SHTMVI------------------------RTHDPAEVLAALGDR--TDIILEGGPTLAG 277

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLEYIG 356
           +F+ + LVD I+ Y + +++G G +P+  + G         +   + +  G DV L  + 
Sbjct: 278 AFLRAGLVDRILAYLAPMLLG-GNVPAVEDVGVTTLSRALRWEYDQIERMGPDVLLSLVP 336

Query: 357 K 357
           +
Sbjct: 337 R 337


>gi|117928481|ref|YP_873032.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Acidothermus cellulolyticus 11B]
 gi|117648944|gb|ABK53046.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Acidothermus cellulolyticus 11B]
          Length = 366

 Score =  245 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 113/342 (33%), Positives = 159/342 (46%), Gaps = 36/342 (10%)

Query: 19  RWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLE 77
               G TS NP V C+++   G V+G G     G PHAEV AL  AG  ARG T  VTLE
Sbjct: 26  ERGRGSTSPNPIVGCVVLDAAGRVVGEGFHLRAGGPHAEVVALAAAGPAARGGTLVVTLE 85

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
           PC H GR+ PC   I   GIRRVV  V DP     G      +   ++   ++ +E    
Sbjct: 86  PCRHVGRTGPCVAEIRRAGIRRVVYAVADPTAAGGGGAELAAAGLDVVG-GVLAAEAAAA 144

Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
             A+L R    R  +T K A + D  +  A   S  IT   ++  VHLLRAQSDAI++G 
Sbjct: 145 NRAWLHRVATGRPFVTWKYAATLDGRVAAADGSSRWITSDEARRDVHLLRAQSDAIVIGT 204

Query: 198 GTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
           GT LADDP LT R++        P+R+++     L   +++      AP +         
Sbjct: 205 GTALADDPALTVRVDDAAPDLTQPLRVVVGRR-DLPPGARLRDD--TAPTV--------- 252

Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
                             D   +L  L  RGV S+L+EGG  +A +F+ +RLVD I+ Y 
Sbjct: 253 -------------QLRKHDPAAVLARLADRGVLSVLLEGGPTLAAAFLRARLVDRIVAYV 299

Query: 316 SQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCL 352
           + I++G G  P  + +  +      + +        G D+ L
Sbjct: 300 APILLGSG--PPLVADLGIATLAAGQRWRIDEVTRIGPDLRL 339


>gi|317508958|ref|ZP_07966591.1| riboflavin biosynthesis protein RibD [Segniliparus rugosus ATCC
           BAA-974]
 gi|316252723|gb|EFV12160.1| riboflavin biosynthesis protein RibD [Segniliparus rugosus ATCC
           BAA-974]
          Length = 363

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 107/338 (31%), Positives = 156/338 (46%), Gaps = 34/338 (10%)

Query: 27  TNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRS 85
             P V  ++V   G ++GRGVT   G  HAEV A+ EAGE ARGATAYVTLEPC H GR+
Sbjct: 43  PEPPVGAVLVSPGGQIVGRGVTQPPGQAHAEVMAIAEAGERARGATAYVTLEPCDHVGRT 102

Query: 86  PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE-GKIFLHAYLTR 144
            PC++ +I  GI  VV  V DP+ R SG      +    +   ++  E  K  L  +L  
Sbjct: 103 GPCSRALIAAGIAEVVYAVPDPNPRSSGGARTLEAAGVRVRSGVLADEVRKGPLREWLHV 162

Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
           Q   R H+T K A + D         S  ITG   +  VH  R + DAI+VG GT LADD
Sbjct: 163 QRTGRPHVTWKFAATLDGRAAAKDGTSQWITGPQIRESVHATRGELDAIIVGTGTALADD 222

Query: 205 PELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
           P LT RL    L  H P R+++    +L   ++++  A  AP ++               
Sbjct: 223 PWLTARLPDGSLAPHQPTRVVMGTR-ELPEAARVLDDA--APTVLA-------------- 265

Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
                      D  + L +L  +    +L+EGG  +A +F+ + LVD +  + +  ++G 
Sbjct: 266 --------KTHDPAEALAMLGDK--VHVLLEGGPKLAAAFLKAGLVDLVHAHLAPALLGA 315

Query: 323 GGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           G +      +        F        G D+ +  +  
Sbjct: 316 GPLAVGDLGVGTLADALRFSVEDVRQVGGDIAVRLVPD 353


>gi|145295718|ref|YP_001138539.1| hypothetical protein cgR_1645 [Corynebacterium glutamicum R]
 gi|140845638|dbj|BAF54637.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 328

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 112/356 (31%), Positives = 166/356 (46%), Gaps = 41/356 (11%)

Query: 12  SAALRFSRWH----VGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           + AL  +        G TS NP V  +I+  DG V+G G TA  G PHAEV AL  AG  
Sbjct: 4   AHALDLAHHASDQVRGTTSPNPPVGAVILDADGEVVGVGATAPPGGPHAEVVALAAAGAR 63

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A G TA VTLEPC+HYGR+ PC++ +++ GI  V     DP    +G G  +L++ G+  
Sbjct: 64  ANGGTAVVTLEPCNHYGRTGPCSKALLDAGIAHVFYANADPFPSAAGGG-AFLAEAGVDT 122

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +   E    L  +L      R H+TLK A + D   G     S  ITG  ++  VH  
Sbjct: 123 HFL--DERIRVLEPWLQATRLGRPHVTLKFASTVDGFAGATDGTSQWITGPDARAFVHED 180

Query: 187 RAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           R++ DAI+VG GT L D+P LT R  +GL E+ P R+++    ++  DS + +       
Sbjct: 181 RSKRDAIIVGTGTALTDNPSLTARTEDGLYENQPRRVVIGSR-EVPADSNLARLGYE--- 236

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
                                        + + L++L  +G   +L+EGG  +A + +  
Sbjct: 237 -------------------------QYAGIPEALSVLWDKGCRDILIEGGPTLAGAALRL 271

Query: 306 RLVDSIILYRSQIVIGEGG--IPSPLEEGYLE-KNFMCVRRDYFGSDVCLEYIGKN 358
            +VD +  Y +  ++G G   I  P E    +   F        GSDV +E + K 
Sbjct: 272 GIVDQVQAYVAPALLGAGRSVINWPQETTMDQIMRFDTTSVRQLGSDVLIEMMRKE 327


>gi|325268454|ref|ZP_08135084.1| riboflavin biosynthesis protein RibD [Prevotella multiformis DSM
           16608]
 gi|324988982|gb|EGC20935.1| riboflavin biosynthesis protein RibD [Prevotella multiformis DSM
           16608]
          Length = 380

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 104/387 (26%), Positives = 159/387 (41%), Gaps = 37/387 (9%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
           M     D  +M   L+ +R    L   NP V  +IV KDG +IG G     G  HAEV A
Sbjct: 1   MKQEETDEIYMRRCLQLARNGQQLAKPNPMVGAVIVSKDGRIIGEGYHVRCGEGHAEVNA 60

Query: 60  LEEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
                +E       AT YV+LEPCSHYG++PPCA  II  G+RRVV    DP  +V GRG
Sbjct: 61  FASVKKEEEALLHEATVYVSLEPCSHYGKTPPCADLIISKGVRRVVCGCIDPFSKVQGRG 120

Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ---------DNMIG 165
           ++ L + GI +   ++E E       ++T     R ++ LK A ++              
Sbjct: 121 VKRLREAGIDVTVGVLEKECLELNKRFVTYNTHHRPYVILKWAQTKRVTTNTLFNTPTNT 180

Query: 166 MAGCGSVPITGFISKNQVHLLRAQSD--AILVGIGTVLADDPELTC-----RLNGLQEHS 218
           ++   ++P    +   +    R   D  +I+ G    + D  + T       L G   H 
Sbjct: 181 LSNTPAIPSPSPLPHREGSEHRDSPDDLSIINGSQDEITDREKKTSAAYIGNLPGRDYHP 240

Query: 219 -----PMRIILDPHFKLSLDSKII---KTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270
                P   +L    +   D+ ++      L  P + V E   P         +      
Sbjct: 241 LIISTPFTKMLVHKLRAENDAILVGKTTEELEHPQLTVREWSGPNPEKLVLTSHPK-REG 299

Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           +     + L+ L      SL+VEGGA    SF+ + L D I +  +   IGEG     +E
Sbjct: 300 EYATPAEALSHLYAEKKQSLIVEGGAKTLQSFLEAGLWDEIRIETAPFTIGEG-----IE 354

Query: 331 EGYLEKNFMCVRRDYFGSDVCLEYIGK 357
              L  N      +++G +  + Y  +
Sbjct: 355 APPLPGNIRITGIEHYG-NAIITYERR 380


>gi|294675036|ref|YP_003575652.1| riboflavin biosynthesis protein RibD [Prevotella ruminicola 23]
 gi|294472928|gb|ADE82317.1| riboflavin biosynthesis protein RibD [Prevotella ruminicola 23]
          Length = 307

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 105/357 (29%), Positives = 149/357 (41%), Gaps = 59/357 (16%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D +FM   ++ ++        NP V  +IV +G +IG G     G  HAEV A      
Sbjct: 3   DDKKFMQRCIQLAKNGQLNAKPNPMVGAVIVHNGRIIGEGYHVRCGLAHAEVNAFASVRA 62

Query: 66  EARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           E       +T YV+LEPCSHYG++PPCA  IIE G+RRVVV   D    V GRG+Q L  
Sbjct: 63  EDEALLPESTIYVSLEPCSHYGKTPPCADLIIEKGVRRVVVGCIDEFAEVQGRGIQKLRD 122

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +   ++E E K     + T   EKR +I LK A + +  I       V I+   +K
Sbjct: 123 AGIEVEVGVLEDECKALNRRFFTFHREKRPYIILKWAQTANGFIDDH-HQPVQISSDFTK 181

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              H LRA+ DAILVG  T   + P+L  R        P R+++D    L+L+S      
Sbjct: 182 MLSHKLRAEEDAILVGRVTDEREHPQLNVR--EWYGPDPKRMVIDRAHPLNLES------ 233

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
                                                    L  + + S++VEGG     
Sbjct: 234 -----------------------------------------LHAQNIQSIIVEGGTETLQ 252

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           SFI   L D + +  +  +    G  +P     L  +        +G +V + Y  K
Sbjct: 253 SFIVQGLWDELRVETNTSLTVSDGTRAP----QLPASAQVASSHIYGKNVIVVYQRK 305


>gi|85372857|ref|YP_456919.1| riboflavin-specific deaminase/reductase [Erythrobacter litoralis
           HTCC2594]
 gi|84785940|gb|ABC62122.1| riboflavin-specific deaminase/reductase [Erythrobacter litoralis
           HTCC2594]
          Length = 325

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 128/344 (37%), Positives = 171/344 (49%), Gaps = 48/344 (13%)

Query: 21  HVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCS 80
              +++ NP+V C+IVK   VIGRG T  GG PHAE  ALE+AG++ARGAT YVTLEPC+
Sbjct: 21  GRPVSAPNPAVGCIIVKQDRVIGRGWTRVGGRPHAEAAALEQAGQDARGATIYVTLEPCA 80

Query: 81  HYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
           H   R P CA  ++    +RVV+   DPD R  G G+  L + GI V+ +        L 
Sbjct: 81  HESDRGPSCADLLVAARPQRVVLAEVDPDRRTHGAGIARLRRSGITVETLPSPAAAASLA 140

Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199
            +LTR+   R H+TLK+A+S D  I +A   S  ITG  ++   H  RA SDAILVG GT
Sbjct: 141 GFLTRERLGRPHVTLKLALSLDGCIALASGESQWITGEEARAHCHSRRAMSDAILVGGGT 200

Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
             AD P L  RL GL++ SP R++L     + +D                          
Sbjct: 201 WRADKPRLDVRLPGLEDRSPQRVVLTRG--VPID-------------------------- 232

Query: 260 FRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
                + II    + D  +    L         VEGGA  A SF+   LVD + +YR+ I
Sbjct: 233 ----GVRIINEPAQIDRLEAAQYLY--------VEGGAGAAASFLAENLVDRLDIYRAPI 280

Query: 319 VIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGK 357
           VIG GG P+    G  +      ++  V R   GSD    Y  +
Sbjct: 281 VIG-GGKPAFGNIGLADLTSAHGSWKLVERRQLGSDCYEAYERQ 323


>gi|270157224|ref|ZP_06185881.1| riboflavin biosynthesis protein RibD [Legionella longbeachae
           D-4968]
 gi|289164378|ref|YP_003454516.1| Riboflavin biosynthesis protein RibD [Legionella longbeachae
           NSW150]
 gi|269989249|gb|EEZ95503.1| riboflavin biosynthesis protein RibD [Legionella longbeachae
           D-4968]
 gi|288857551|emb|CBJ11389.1| Riboflavin biosynthesis protein RibD [Legionella longbeachae
           NSW150]
          Length = 357

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 90/330 (27%), Positives = 147/330 (44%), Gaps = 5/330 (1%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            +F+ AAL  +R   G  + NP V  + V++G +I +      G PHAE   L +   + 
Sbjct: 3   KKFLLAALEQARLGQGHCAPNPCVGAVAVQNGTIIAQAHHRGAGTPHAEQLLLTQIPPKT 62

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG-LQWLSQKGIIV 126
            G   Y++LEPC+H+GR+PPC   II  G+  VV    DP+  V+     + L  +GI V
Sbjct: 63  PGICLYISLEPCNHWGRTPPCVDAIINHGVEEVVFGYLDPNPIVAQNNSSEKLRSRGIKV 122

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
                +E   F  +Y    + ++  IT+KIA + +  IG A    V ++  + +   H +
Sbjct: 123 THYPVAEITEFYKSYTYWTLTQKPRITVKIAQTLNGKIGQAEGERVILSNALCEQFTHQM 182

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA +D +L    TV  D+P +  RLN  ++   + II D    L+ +++I  TA  A   
Sbjct: 183 RAAADVVLTTAKTVQLDNPRMNVRLNNEEQKKTIAII-DRQLVLNQEARIFSTA--AHCH 239

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           I   N+  +        +         DL  ++  L   G   + VE G A+  +     
Sbjct: 240 IFHCNEQKIF-YPNSTFHPVPEKNGVMDLNVVIKHLGALGYHDVWVEAGGALFSALHREG 298

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
           LV    LY     +    I +  + G   +
Sbjct: 299 LVHRTYLYIVPTSLDHSAISAYQQSGVFSR 328


>gi|254497578|ref|ZP_05110366.1| riboflavin biosynthesis protein RibD [Legionella drancourtii
           LLAP12]
 gi|254353194|gb|EET11941.1| riboflavin biosynthesis protein RibD [Legionella drancourtii
           LLAP12]
          Length = 351

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 90/346 (26%), Positives = 152/346 (43%), Gaps = 7/346 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            +F+ AAL  +R   G  + NP V  + V++G +I +      G PHAE   L +   + 
Sbjct: 3   KKFLLAALEQARLGQGFCAPNPCVGAVAVQNGNIIAQTCHHGAGTPHAEQLLLAQIPPKT 62

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIEC-GIRRVVVCVDDPDVRVSGRG-LQWLSQKGII 125
            G + Y++LEPC+H+GR+PPC   II   GI  V+    DP+  V+     + L  +GI 
Sbjct: 63  PGVSLYISLEPCNHWGRTPPCVDVIINHGGIEHVIFAYADPNPIVAQNNSTEKLRAQGIK 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           V     +E   F  +Y    + K+  +T+KIA + +  IG      V ++  +     H 
Sbjct: 123 VTHYPVAEITEFYKSYTYWTITKKPRVTVKIAQTLNGKIGRKVGERVVLSNSLCGEFTHQ 182

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +RA +D IL    T+  D+P+L  RL   ++  P+ II D    L+ +++I  TA    +
Sbjct: 183 MRAATDVILTSARTIQLDNPKLNVRLGAKEQAKPVAII-DRQLTLNNEAQIFSTAAHCHI 241

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
               E        +  +     +     DL  ++  L   G   + VE G A+  +    
Sbjct: 242 YYCDERKISYSKSSLHRM---PMKNGVMDLSAVIRHLGELGYHDVWVEAGGAIFTALHQE 298

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
            LV    LY     + +  I +  + G  ++    V     G ++ 
Sbjct: 299 GLVHRTYLYLVPTSLEQNAISAYQQSGLFDRP-HTVSWHAMGDNMM 343


>gi|296140262|ref|YP_003647505.1| riboflavin biosynthesis protein RibD [Tsukamurella paurometabola
           DSM 20162]
 gi|296028396|gb|ADG79166.1| riboflavin biosynthesis protein RibD [Tsukamurella paurometabola
           DSM 20162]
          Length = 332

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 117/350 (33%), Positives = 160/350 (45%), Gaps = 36/350 (10%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGAT 71
            A+  S    G+++ NP V  +I+  DG V GRG TA  G PHAEV AL EAG+ ARG T
Sbjct: 13  LAIEESVAARGVSTPNPPVGAVILAADGTVAGRGRTAPAGGPHAEVVALAEAGDAARGGT 72

Query: 72  AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
           A VTLEPC H GR+ PC Q +I  GI RV     DP+  V+  G   L   G+ V  +  
Sbjct: 73  AVVTLEPCDHTGRTGPCTQALIAAGIARVAYAAADPNP-VAAGGAATLRSAGLDVTHLGV 131

Query: 132 SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191
               +    +  R    R  +T+K+A + D  I      S  ITG  ++ +VH  RAQ D
Sbjct: 132 EPWPLTEWLFRQR--HGRPMVTVKLAATVDGRIAAPDGTSQWITGPAARARVHAERAQLD 189

Query: 192 AILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           AI+VG GTV  DDP LT R     L  H P RI++    ++S  +KI   A    V+ V 
Sbjct: 190 AIIVGTGTVAVDDPALTARRPDGSLYRHQPNRIVI-GDREVSSGAKIF--AAPGKVVRVH 246

Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
              DP  ALA     +                        + VEGG+ V  +F+ + LVD
Sbjct: 247 -GHDPRAALAAAADAV-----------------------HVQVEGGSTVIGAFLAAGLVD 282

Query: 310 SIILYRSQIVIGEGGIPSPL---EEGYLEKNFMCVRRDYFGSDVCLEYIG 356
            +  Y + +++G G     +                 +  G DV L  + 
Sbjct: 283 RVQAYIAPVLLGAGLAALSVPGIGTLGDALRMRLDSVERLGDDVLLTLLR 332


>gi|288929017|ref|ZP_06422863.1| riboflavin biosynthesis protein RibD [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288330001|gb|EFC68586.1| riboflavin biosynthesis protein RibD [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 348

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 99/360 (27%), Positives = 157/360 (43%), Gaps = 58/360 (16%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D R+M   L+ +R  +     NP V  +IV +  +IG G   + G  HAEV A      E
Sbjct: 42  DERYMRRCLQLARCGLLGAKPNPMVGAVIVYNDRIIGEGYHIHCGEGHAEVNAFAAIRPE 101

Query: 67  AR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                  +T YV+LEPCSHYG++PPCA  II  G+ RVVV   DP  +V GRG++ L Q 
Sbjct: 102 DEPFLPHSTLYVSLEPCSHYGKTPPCADLIIRKGVPRVVVGCVDPFSKVQGRGIEKLRQA 161

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +V  ++E         ++  Q E+R ++ +K A + +  I      ++ I+   ++ 
Sbjct: 162 GIEVVVGVLEKACLALNRRFIVFQREQRPYVIMKWAQTANGFIDDHFH-ALAISTPFTQM 220

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
             H LRA+ DAILVG  T   + P L  R       +P R++L  H              
Sbjct: 221 LSHKLRAECDAILVGKTTDEREHPALNTR--HWWGENPRRLVLHRH-------------- 264

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
                                          + + +LL  L    V +L+VEGGA V  +
Sbjct: 265 -------------------------------QPITQLLAQLYQDNVQTLIVEGGAIVHQA 293

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           FI++   D I    +   + +G          +   F  ++++ +  +V  E++ +   L
Sbjct: 294 FIDANCCDEIHRETAPFTVFDGTRTV-----AIPPKFQLIKQEIYDGNVLEEFVSEYASL 348


>gi|242065054|ref|XP_002453816.1| hypothetical protein SORBIDRAFT_04g018500 [Sorghum bicolor]
 gi|241933647|gb|EES06792.1| hypothetical protein SORBIDRAFT_04g018500 [Sorghum bicolor]
          Length = 522

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 85/313 (27%), Positives = 139/313 (44%), Gaps = 22/313 (7%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--------DGIVIGRGVTAYGGCPHAE 56
           + DA  +  A   +    GLTS +P+  C+I +        D  V+G G     G P AE
Sbjct: 52  ANDALLLRRAADVADRSAGLTSPHPNFGCVIARPQPNTDSTDSWVVGEGFLYAQGTPCAE 111

Query: 57  VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           + A +EAGE A G+TAY+ LEP   +G +      +++ GI RVVV +  P   + G+ +
Sbjct: 112 LLAAQEAGEHACGSTAYLNLEPGDCFGDNTA-VGSLVQAGITRVVVGLRHPLKHLRGKAI 170

Query: 117 QWLSQKGIIVDRMMESE-----------GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG 165
           Q L  +GI VD + E                     L R         LK A++ D  I 
Sbjct: 171 QALRSEGIQVDVVGEDLQSKLFEEALKSCLTVNAPLLYRAAFHVPFSVLKYAMTADGKIA 230

Query: 166 MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILD 225
            +   +  I+G  S+ +V  LR +SDA++VG  TV  DDP LT R   ++ H P+RI++ 
Sbjct: 231 ASSGHASWISGKASRGRVFELRGRSDAVIVGGNTVRFDDPRLTAR--HVKGHVPVRIVMS 288

Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285
               L  ++ +        ++                K + ++  D  + + +++    R
Sbjct: 289 QSLNLPDEANLWNVNDAYTIVATQRGARRDFQKKLAMKGVEVVEFDMLNPRNVMSYCYDR 348

Query: 286 GVTSLLVEGGAAV 298
           G  ++L E G  +
Sbjct: 349 GYLAVLWECGGTL 361


>gi|269795119|ref|YP_003314574.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Sanguibacter keddieii DSM 10542]
 gi|269097304|gb|ACZ21740.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Sanguibacter keddieii DSM 10542]
          Length = 393

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 115/391 (29%), Positives = 170/391 (43%), Gaps = 71/391 (18%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG------------------------- 39
           + D   M+ AL  +R        NP V C+I+                            
Sbjct: 22  TLDEA-MAHALDLARRGPAH-GPNPQVGCVILAADTADATRTAGTPGATSAGGAEASRPR 79

Query: 40  IVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
            V+  G     G PHAE  AL  A   G + RGATA VTLEPC+H GR+ PCAQ +++ G
Sbjct: 80  RVLAVGWHRGAGTPHAEADALARASASGVDVRGATAVVTLEPCNHTGRTGPCAQALLDAG 139

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
           +  VVV V DP+  V+  G+  L   G+ +   ++  EG+  L  +LT     R  +TLK
Sbjct: 140 VAEVVVSVGDPNP-VASGGMGHLRSHGVAVRTGLLADEGEELLRVWLTSVRAGRPFVTLK 198

Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215
            A S D  +  A   S  ITG  S+   H +RA  DAILVG GT+LADDP LT R    +
Sbjct: 199 TATSLDGCVAAADGSSRWITGPQSRAHAHTVRATVDAILVGTGTLLADDPTLTARPPVPE 258

Query: 216 E-----------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
                       H P+R+++     ++ D+++                        R  +
Sbjct: 259 GEVGDGVPEPAVHQPLRVVVGERA-VADDARV------------------------RGGD 293

Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
              ++    D+ ++L  L    V  +LVEGG  VA +F+ + +VD I  Y + +++G+G 
Sbjct: 294 GRFVHLATHDVHEVLARLAALEVRHVLVEGGPTVATAFVTAGVVDEIHSYVAPVLVGDGR 353

Query: 325 IPSPLEEGY---LEKNFMCVRRDYFGSDVCL 352
                  G        +     +  G DV L
Sbjct: 354 RAVGALGGQSIDDAVRWSTSTVERLGEDVLL 384


>gi|224067884|ref|XP_002302581.1| predicted protein [Populus trichocarpa]
 gi|222844307|gb|EEE81854.1| predicted protein [Populus trichocarpa]
          Length = 378

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 90/344 (26%), Positives = 161/344 (46%), Gaps = 25/344 (7%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
            +M   +  +R  +G TS NP V C+IVKDG ++G G     G PHAEV AL +A + A 
Sbjct: 29  FYMRRCVELARKAIGCTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAEDLAE 88

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
            ATAYV+LEPC+HYGR+PPC++ +++  +++VV+ + DP+  V+ RG+Q L   GI +V 
Sbjct: 89  NATAYVSLEPCNHYGRTPPCSEALVKAKVKKVVIGMIDPNPIVASRGVQRLRDAGINVVV 148

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD-NMIGMAGCGSVPITGFISKNQVHLL 186
            + E   K    A++ + +     +TL+ ++S + +++   G G     G+ S      L
Sbjct: 149 GVEEELCKRLNEAFIHKMLTGSPFVTLRYSLSVNGHLVNQLGEGVTDTGGYYS-----QL 203

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
             + DA+++   ++    P    +  G     P+ I++       +   ++     + V 
Sbjct: 204 LQEYDAVILSA-SLTGSSPFPASQEPGAN--QPLWILMAGGPSSPIQIPLLTEEAASKVT 260

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI--- 303
           I T+ +         KK I  +  D  +L  +L     RG+ S+L++    +  SF+   
Sbjct: 261 IFTDKEASEEPETS-KKGIETVVLDKINLNAILEYCKSRGLCSVLMD----LRGSFVELE 315

Query: 304 -------NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
                     L+  I++          G+ S      + +    
Sbjct: 316 ELLKDGTEQNLLQKIVVEVLPFWDESSGLSSLTASKSIRRRLKV 359


>gi|94498080|ref|ZP_01304643.1| riboflavin biosynthesis protein RibD [Sphingomonas sp. SKA58]
 gi|94422515|gb|EAT07553.1| riboflavin biosynthesis protein RibD [Sphingomonas sp. SKA58]
          Length = 317

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 127/352 (36%), Positives = 176/352 (50%), Gaps = 45/352 (12%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+AA+  SR   GL++ NP+V CLIV+DG V+GRG T  GG PHAE QAL++A E+AR A
Sbjct: 1   MAAAIALSRRGRGLSTPNPNVGCLIVRDGRVVGRGWTQKGGRPHAEAQALDQAMEQARDA 60

Query: 71  TAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           TAYVTLEPC H   R P CA  +   G+ RVV+ + DPD R +G+G  WL  +G+ +   
Sbjct: 61  TAYVTLEPCFHLSPRGPRCADLLARAGVARVVIALRDPDPRTNGQGAAWLRDRGVAVEMG 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           ++  E    +  ++ RQ   R H+TLK+ +S D  I +A   S  ITG  ++   HL RA
Sbjct: 121 LLADEAAAAMAGFVLRQTLGRPHVTLKLGLSLDGRIALANGSSRWITGPQARAHAHLERA 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + DAILVG GT+ AD P L  RL GL++ +P R                        +++
Sbjct: 181 RHDAILVGGGTLRADAPRLDVRLPGLEDRAPRR------------------------LLL 216

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           T    P            I   D  D               LLVEGGA  A +F+ + L+
Sbjct: 217 TRGPAPG-NWERIGAPEEIATLDRVD--------------HLLVEGGAGAAAAFLRADLI 261

Query: 309 DSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
           D ++LYR+ I+IG+G    G     +       +        G D    Y  
Sbjct: 262 DRLLLYRAPILIGDGLAGIGDIGLGDLAQAHGRWRLTDGRTLGVDKLEVYER 313


>gi|54401353|gb|AAV34447.1| predicted diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [uncultured proteobacterium RedeBAC7D11]
          Length = 366

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 91/369 (24%), Positives = 159/369 (43%), Gaps = 23/369 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+ F+S A+               V C+IVKD  +IGRG     G  HAE+ A+ +  ++
Sbjct: 3   DSFFISKAISLGLKGRFTAKPGVKVGCVIVKDNKIIGRGFYQKYGGSHAEINAINDVKKK 62

Query: 67  AR--------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            +        G+  +VTLEPCS  G++  C   + +   +R++V   DP    +  G+  
Sbjct: 63  YKTNYLSKLSGSDLFVTLEPCSKKGKTGACVNELKKYDFKRIIVGAKDP----TQSGINS 118

Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
           L + G  V  +   + +I   ++  +   K+  +  K+A+S D+    A      ITG  
Sbjct: 119 LQRAGYEVKNLNNQQCQILNESFFHKVKSKKPFVRAKVAMSSDHKSVFASKQRKWITGIP 178

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDS 234
           ++N V +LRA++D IL G GT+  D+P +  R    +       P R +     KL+  +
Sbjct: 179 ARNDVQILRAEADIILTGAGTINEDNPSMNVRSKKIIANENFIQPERYVFSNSLKLNWSA 238

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLV 292
              K      V++ ++   P L+   +  ++  +  +   L  K  +  +    V ++L+
Sbjct: 239 PFFKLPGK-KVVVTSKKSLPKLSQGIKDISLMNLGKNNDSLNSKDFIKRISKLNVNNILI 297

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGS 348
           E G  +  SF +  LVD  I Y S   +G+  +        L    +K F  V     G 
Sbjct: 298 EAGPRLLGSFSDHDLVDEYIFYISPEKLGDKALHFYGGNKQLNFFDKKLFDIVDETNIGK 357

Query: 349 DVCLEYIGK 357
           D  +    K
Sbjct: 358 DKKITLRKK 366


>gi|260910408|ref|ZP_05917080.1| riboflavin biosynthesis protein RibD [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260635484|gb|EEX53502.1| riboflavin biosynthesis protein RibD [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 351

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 98/357 (27%), Positives = 153/357 (42%), Gaps = 58/357 (16%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           + D R+M   L+ +R  +     NP V  +IV    +IG G   + G  HAEV A     
Sbjct: 48  TTDERYMRRCLQLARCGLLGAKPNPMVGAVIVYRDRIIGEGYHVHCGEGHAEVNAFAAVR 107

Query: 65  EEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            E       +T YV+LEPCSHYG++PPCA  II   + RVVV   DP  +V GRG++ L 
Sbjct: 108 PEDESLLPQSTLYVSLEPCSHYGKTPPCADLIIRKEVARVVVGCIDPFAKVQGRGIEKLR 167

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           + GI +V  ++E E       ++  Q E+R ++ +K A + +  I      ++ I+   +
Sbjct: 168 RAGIEVVVGVLEKECLALNRHFIVFQREQRPYVIMKWAQTANGFIDDHY-RALAISTPFT 226

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H LRA+ DAILVG  T   + P L  R       SP R++L     +         
Sbjct: 227 QMLSHKLRAECDAILVGKTTDEREHPALNTR--HWWGKSPRRLVLHRQQAI--------- 275

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
                                                +LL  L    V +L+VEGG+ V 
Sbjct: 276 ------------------------------------AQLLAQLYQDNVQTLIVEGGSTVH 299

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
            +FIN+   D I    +   + +G          +   F  ++++ F  +V  E++ 
Sbjct: 300 QAFINANCCDEIHRETAPFTVFDGTKAI-----DIPPKFRLIKQEIFDGNVMEEFVR 351


>gi|256824048|ref|YP_003148008.1| riboflavin biosynthesis protein RibD [Kytococcus sedentarius DSM
           20547]
 gi|256687441|gb|ACV05243.1| riboflavin biosynthesis protein RibD [Kytococcus sedentarius DSM
           20547]
          Length = 461

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 105/442 (23%), Positives = 166/442 (37%), Gaps = 125/442 (28%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAG----- 64
           M  AL  +         NP V C+++ +DG  +G G     G PHAEV AL +AG     
Sbjct: 22  MRRALDLAARG-PAVDPNPRVGCVLLDRDGRTLGEGFHQGAGTPHAEVAALLDAGCGPAA 80

Query: 65  -----------------------------------------------EEARGATAYVTLE 77
                                                              GATA VTLE
Sbjct: 81  GPRPSGPVTHAGPRPSGPVTHAGPRPSGPVTHAGPRPSGPVTRAGTPRLPAGATAVVTLE 140

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKI 136
           PC+H GR+ PCA+ +++  I RVV+   DP   ++  G + L   G+ +V  ++ESE   
Sbjct: 141 PCNHTGRTGPCAEALLDAEIARVVIAQSDPTP-LASGGAERLRTAGVEVVTGVLESEATA 199

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
               +       R  +TLK+A + D  +  A   S  ITG  ++  VH  RA + AI+VG
Sbjct: 200 LNRWFTASARLGRPVVTLKLASTLDGRVAAADGTSQWITGGPARLDVHRQRATAGAIVVG 259

Query: 197 IGTVLADDPELTCR-------------------------------------LNGLQEHSP 219
            GT LADDP+LT R                                             P
Sbjct: 260 TGTALADDPKLTVRLPAAELAAPAVESDPAPEAGPAPSATPSTDAAPAPDATTAPTPRQP 319

Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279
           +R+++    +L   +++   A                           I     D  ++L
Sbjct: 320 LRVVVGTR-ELPASARVFDDAAET------------------------ISLRTHDPAEVL 354

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK--- 336
            +L  RG+  + +EGG  +A +F+ + LVD ++ Y +  ++G G  PS + +  +     
Sbjct: 355 RVLSDRGIHHVWLEGGPTLAAAFLRAGLVDRLVHYLAPALLGAG--PSLIGDLGIGSIDG 412

Query: 337 --NFMCVRRDYFGSDVCLEYIG 356
              +      + G D+ L  + 
Sbjct: 413 IDRWHLEDVTHLGDDLRLTLVP 434


>gi|288803443|ref|ZP_06408875.1| riboflavin biosynthesis protein RibD [Prevotella melaninogenica
           D18]
 gi|288334053|gb|EFC72496.1| riboflavin biosynthesis protein RibD [Prevotella melaninogenica
           D18]
          Length = 365

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 103/400 (25%), Positives = 155/400 (38%), Gaps = 99/400 (24%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
           M     D ++M   L+ +R    L   NP V  +IV K+G +IG G     G  HAEV A
Sbjct: 1   MKQEETDEKYMRRCLQLARNGQLLAKPNPMVGAVIVSKEGRIIGEGYHVRCGKGHAEVNA 60

Query: 60  LEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
                +E     R AT YV+LEPCSHYG++PPCA  II  G+RRVV    DP   V GRG
Sbjct: 61  FASVSKEDEALLREATVYVSLEPCSHYGKTPPCADLIISKGVRRVVCGCIDPFAEVQGRG 120

Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHIT--------------------- 153
           ++ + + GI +   ++E E       ++T    KR ++                      
Sbjct: 121 VKKIREAGIEVTVGVLEKECLELNKRFITYNTHKRPYVILKWAEASSPSPLPLPQREGSN 180

Query: 154 -------------------------LKIAVSQDNMIGMAGCGSVP--ITGFISKNQVHLL 186
                                         S   +  + G    P  I+   +K  VH +
Sbjct: 181 HRDSPNNSEKVIANITIENRNNRIYCNYKPSVAYIGNLPGKDYQPLIISTPFTKMLVHKM 240

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA++DAILVG  T   + P+LT R       +P +++L                      
Sbjct: 241 RAENDAILVGKTTEELEQPQLTVR--EWSGPNPEKLVLTSQ------------------- 279

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
                  P  A  +                ++L+ L      SL+VEGGA    SF+++ 
Sbjct: 280 -------PTKAGEYA------------TPAEVLSHLYAEKQQSLIVEGGAKTLQSFLDAG 320

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
           L D I +  +   +   GI +P     L  N   ++ + +
Sbjct: 321 LWDEIRIESAPFTV-NKGIEAP----KLPDNLRVIKVEKY 355


>gi|220912436|ref|YP_002487745.1| riboflavin biosynthesis protein RibD [Arthrobacter chlorophenolicus
           A6]
 gi|219859314|gb|ACL39656.1| riboflavin biosynthesis protein RibD [Arthrobacter chlorophenolicus
           A6]
          Length = 373

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 106/368 (28%), Positives = 159/368 (43%), Gaps = 38/368 (10%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQAL 60
           P +  + + M  AL  +    G    NP V  ++V  DG  +  G     G  HAE  A+
Sbjct: 10  PFTPAEVQAMEHALEAAL--QGPRGANPLVGAVVVSPDGRELATGYHRGAGTAHAEADAV 67

Query: 61  ---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
               EAG +  G T  VTLEPC+H GR+ PC + II  GI  VV  VDDP    +G G  
Sbjct: 68  ARAREAGVDLAGCTMVVTLEPCNHVGRTGPCTEAIIAAGITDVVYAVDDPHDPAAG-GAA 126

Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
            L   GI +   +  +E       +     EKR   TL IA + D  I      S  I+ 
Sbjct: 127 TLRNAGISVRSGLAAAESLELNRRWFEAVAEKRPFTTLHIAQTLDGRIAAEDGTSQWISS 186

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDS 234
             S    H +R++ DAILVG  TV  D+P L  R          P+R ++     +   +
Sbjct: 187 PESLADNHGIRSRIDAILVGTQTVAVDNPRLNARDASGNPAARQPVRAVMGLR-DIPEHA 245

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
            I+    LA                        ++   RD ++ LT L   G   ++VEG
Sbjct: 246 AILGDDGLA------------------------VHLPTRDPREALTTLYASGTRHVMVEG 281

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-LE 353
           G+ +  +F+ + LVD +I+Y +  ++G  G PS L+   +         ++  SD   + 
Sbjct: 282 GSRILSAFLTAGLVDELIVYLAPTLLGS-GTPS-LDGLGVSTLPDAQHWEWDASDGGPVR 339

Query: 354 YIGKNLCL 361
            +G++L L
Sbjct: 340 TLGRDLRL 347


>gi|312113516|ref|YP_004011112.1| riboflavin biosynthesis protein RibD [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218645|gb|ADP70013.1| riboflavin biosynthesis protein RibD [Rhodomicrobium vannielii ATCC
           17100]
          Length = 398

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 123/360 (34%), Positives = 182/360 (50%), Gaps = 17/360 (4%)

Query: 12  SAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
             AL  ++ ++G TS NPSV  ++     G +I    TA GG PHAEV AL EAG+ A+G
Sbjct: 35  RRALFVAQTNIGATSPNPSVGAVVADARTGEIIASAATARGGRPHAEVLALREAGDRAKG 94

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           A    TLEPCSH+G +PPCA  I+  GI  ++    DPD RV GRGL +++Q G+   R 
Sbjct: 95  ALIITTLEPCSHFGATPPCAHSIVNAGISHLIYGSLDPDTRVGGRGLTYVAQHGVRATRG 154

Query: 130 MES---EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +   +       +  R  E+R  + +K+AV     + +     V ITG +++   HLL
Sbjct: 155 TPAFVRDCDWLHLGHSLRVTERRPFVQVKLAVDAAGFVPLGNGKPVFITGDVARAAAHLL 214

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           RA++DAILVG  TV ADDPELTCRL GL + SP+R++L     +   +K+       PV 
Sbjct: 215 RARADAILVGRKTVEADDPELTCRLPGLADRSPVRVVLASRCNVPPAAKLFANER-PPVW 273

Query: 247 IVTENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           IV   D    A  F +  + ++          +L+  +  +   G+T LLVEGG + A  
Sbjct: 274 IVC-GDSTEGAAFFGRPGVRVLDIGASLTGRLNLRLAMMRVAAEGITRLLVEGGPSTARG 332

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIG 356
           FI++ L D +I+ +    +       P  +  L+       F    +   G+D    Y  
Sbjct: 333 FIDAGLADEVIIMQGTQTLDPQAGMPPFGDRGLDLVAASPQFTLFDKRKAGADTISIYRS 392


>gi|319442108|ref|ZP_07991264.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           [Corynebacterium variabile DSM 44702]
          Length = 353

 Score =  242 bits (617), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 118/346 (34%), Positives = 166/346 (47%), Gaps = 47/346 (13%)

Query: 22  VGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCS 80
            G TS NP V  +I+  DG V+G G T+  G PHAEV AL EAGE+ARG TA VTLEPC+
Sbjct: 31  RGTTSPNPPVGAVILSVDGDVVGTGGTSPVGGPHAEVNALAEAGEKARGGTAVVTLEPCN 90

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-------IIVDRMMESE 133
           H GR+ PCA  ++E GI RVV    DP     G G ++L   G       +  D  ++  
Sbjct: 91  HTGRTGPCALALLEAGIARVVYAFADPGDAEGG-GAEFLRSHGVPVTGPLVTGDTGLDGV 149

Query: 134 GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAI 193
            +  +  +L  +   R H+TLK A + D         S  ITG  ++  VHL R++ DAI
Sbjct: 150 PQFSVEPWLASRRLGRPHVTLKYAGTLDGFAAATDGTSQWITGESARALVHLDRSRRDAI 209

Query: 194 LVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251
           +VG GT+LADDP LT R    GL +H P R+++     + +D+ +               
Sbjct: 210 IVGTGTILADDPRLTARRPEGGLYDHQPERVVVGRT-DVPVDAAVF-------------- 254

Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311
                  A R +           L ++L  L  RG+  +L+EGG  +A SFI   LVD++
Sbjct: 255 ------PALRYRGGA--------LAEVLADLGARGIVDVLIEGGPHIAASFIADGLVDAV 300

Query: 312 ILYRSQIVIGEGGIPSPLEEGYLE------KNFMCVRRDYFGSDVC 351
             Y +  ++G  GIP+                F     D    D+ 
Sbjct: 301 DAYTAPALLGA-GIPTVAPAASTATTIGGISRFTLRSVDVVDGDIV 345


>gi|115450331|ref|NP_001048766.1| Os03g0117200 [Oryza sativa Japonica Group]
 gi|108705865|gb|ABF93660.1| riboflavin biosynthesis protein RibD containing protein, expressed
           [Oryza sativa Japonica Group]
 gi|113547237|dbj|BAF10680.1| Os03g0117200 [Oryza sativa Japonica Group]
 gi|215687333|dbj|BAG91867.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 423

 Score =  242 bits (617), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 100/359 (27%), Positives = 169/359 (47%), Gaps = 22/359 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D  +M   +  +R   G TS NP V C++V+DG V+G G     G PHAEV AL +A
Sbjct: 75  SDMDGHYMRRCVELARKAAGHTSPNPMVGCVVVRDGRVVGEGFHPKAGQPHAEVFALRDA 134

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G+ A  ATAYV+LEPC+HYGR+PPC + +I   ++ VVV + DP+  V+ +G++ L   G
Sbjct: 135 GDLAENATAYVSLEPCNHYGRTPPCTEALINAKVKDVVVGMTDPNPIVASKGIERLRSAG 194

Query: 124 IIVDRMMESE--GKIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISK 180
           I V   ++ E   +    AY+ R +  ++  TL+  +S +  +I   G G+    G+ S 
Sbjct: 195 IDVRLCVDEEASCRKLNEAYIHRMLTGKAFATLRTTLSMNGVVINQIGSGADQPEGYYS- 253

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
                L  + D +++        +     R  G     P+ II+       L+   +K  
Sbjct: 254 ----QLLKEYDGVIISSNFAKT-NTLPVSREAGA--KQPLYIIIAQCENSQLNIPFLKEE 306

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV---EGG-- 295
             A  ++++  D P+         ++++  D  +L  +L +L  RG+ S+LV   E G  
Sbjct: 307 RAAEAVVLS--DSPITV---EPAGVDVLVLDQMNLDAILQLLAQRGLCSVLVDFREAGGG 361

Query: 296 -AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
            A++ ++F + +LV  +++    +     G       G        V        V L+
Sbjct: 362 IASLLNNFQDDKLVQKVVVELLPVWAVSKGPSDLAFGGSQSFPLKDVEHSEVNGSVLLQ 420


>gi|159478382|ref|XP_001697283.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Chlamydomonas reinhardtii]
 gi|158274757|gb|EDP00538.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Chlamydomonas reinhardtii]
          Length = 684

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 94/368 (25%), Positives = 149/368 (40%), Gaps = 21/368 (5%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGI-VIGRGVTAYGGCPHAEVQAL 60
           ++  D   + AA R +    G T  +P+ AC +V  DG  VI +      G   AEV A+
Sbjct: 42  LTDPDYAHLEAAARLAGSPEGETQPHPNAACRLVGPDGRTVISQAFLRAQGTTSAEVLAV 101

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AG  ARG TAY+ LEP   +G      + ++  G+ RVVV +  P   +  RG+  L 
Sbjct: 102 SAAGPAARGGTAYLNLEPGDCHG-EGAAVEALVRSGVSRVVVGLRHPLRHLRSRGIGLLR 160

Query: 121 QKGIIVDRMMESE-----------GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC 169
             G+ V  M                         R   +R    LK A++ D  I     
Sbjct: 161 NAGLRVGEMGGVLAGGLAGDPRPTPFPICFPRTCRAALRRPLGVLKYAMTLDGKIATNLG 220

Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229
            S  ++   S+  V   RA+SDA++VG  TV  D+P LT R  G   H+P RI++     
Sbjct: 221 HSAWVSSAQSRALVFETRARSDAVIVGGNTVRRDNPRLTTRREG--GHTPARIVMSRTLD 278

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
           L  D+ +    L   +++           A R + + ++  D    + +      RG   
Sbjct: 279 LPEDANLWDVTLAPTIVLTQRGARTRFQSALRAQGVEVVEFDFLTPESVADYCQERGFLQ 338

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRD 344
              E G  +A   I S +V  ++ + +  +IG    P+P+ E    +    V        
Sbjct: 339 CFWECGGTLAAPAIASGVVHKVMAFVAPKIIGGLRAPTPVGELGFVEMTQAVELVDTEWS 398

Query: 345 YFGSDVCL 352
             G D+ +
Sbjct: 399 QVGPDLMI 406


>gi|256831920|ref|YP_003160647.1| riboflavin biosynthesis protein RibD [Jonesia denitrificans DSM
           20603]
 gi|256685451|gb|ACV08344.1| riboflavin biosynthesis protein RibD [Jonesia denitrificans DSM
           20603]
          Length = 354

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 107/357 (29%), Positives = 152/357 (42%), Gaps = 39/357 (10%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCPHAEVQALEEA---GEE 66
           M+ AL  +    G+   NP V  +IV +    +  G     G  HAEV AL  A   G  
Sbjct: 1   MNVALEQA--ARGVRGANPLVGAVIVDEHSGDVAVGHHRGRGTAHAEVDALRCARDRGLR 58

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
              AT YVTLEPC+HYG +PPC   I++ GI RVV+  +DP   V+  G   L   G++V
Sbjct: 59  LDAATMYVTLEPCNHYGVTPPCTDAILDAGIPRVVIAGEDPH-DVAAGGAHTLRAAGVVV 117

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
           D +           +LT Q E+R  I  KIA S D         S  ITG  ++   H  
Sbjct: 118 DIVPLDAAVSLNERWLTAQRERRPFIRAKIAQSLDGFSAALDGTSQWITGPQAREYAHKQ 177

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R   DAI+VG GTVLAD P LT R        P+R+ +  H     D+ I          
Sbjct: 178 RHLVDAIVVGTGTVLADQPTLTARY-DPGGAQPLRVHM-GHTTTPPDAPI---------- 225

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
                         R  +   ++    D       L  RG   +L+EGG  +  +F+ + 
Sbjct: 226 --------------RGADGRFVHLPTHDPNLAAHQLYERGARDILIEGGPRLIGAFLEAG 271

Query: 307 LVDSIILYRSQIVIGEGGIPSPL---EEGYLEKNFMC---VRRDYFGSDVCLEYIGK 357
           LVD + +Y + +++G G   + L           F+     +    G D+   YI +
Sbjct: 272 LVDLLEVYTAPMLLGGGTTSTALSSVASLGDALRFLPDPIAQPMRLGVDLLTHYIPR 328


>gi|222624084|gb|EEE58216.1| hypothetical protein OsJ_09181 [Oryza sativa Japonica Group]
          Length = 396

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 100/359 (27%), Positives = 169/359 (47%), Gaps = 22/359 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D  +M   +  +R   G TS NP V C++V+DG V+G G     G PHAEV AL +A
Sbjct: 48  SDMDGHYMRRCVELARKAAGHTSPNPMVGCVVVRDGRVVGEGFHPKAGQPHAEVFALRDA 107

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G+ A  ATAYV+LEPC+HYGR+PPC + +I   ++ VVV + DP+  V+ +G++ L   G
Sbjct: 108 GDLAENATAYVSLEPCNHYGRTPPCTEALINAKVKDVVVGMTDPNPIVASKGIERLRSAG 167

Query: 124 IIVDRMMESE--GKIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISK 180
           I V   ++ E   +    AY+ R +  ++  TL+  +S +  +I   G G+    G+ S 
Sbjct: 168 IDVRLCVDEEASCRKLNEAYIHRMLTGKAFATLRTTLSMNGVVINQIGSGADQPEGYYS- 226

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
                L  + D +++        +     R  G     P+ II+       L+   +K  
Sbjct: 227 ----QLLKEYDGVIISSNFAKT-NTLPVSREAGA--KQPLYIIIAQCENSQLNIPFLKEE 279

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV---EGG-- 295
             A  ++++  D P+         ++++  D  +L  +L +L  RG+ S+LV   E G  
Sbjct: 280 RAAEAVVLS--DSPITV---EPAGVDVLVLDQMNLDAILQLLAQRGLCSVLVDFREAGGG 334

Query: 296 -AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
            A++ ++F + +LV  +++    +     G       G        V        V L+
Sbjct: 335 IASLLNNFQDDKLVQKVVVELLPVWAVSKGPSDLAFGGSQSFPLKDVEHSEVNGSVLLQ 393


>gi|308806057|ref|XP_003080340.1| putative riboflavin biosynthesis protein ribD (ISS) [Ostreococcus
           tauri]
 gi|116058800|emb|CAL54507.1| putative riboflavin biosynthesis protein ribD (ISS) [Ostreococcus
           tauri]
          Length = 655

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 88/365 (24%), Positives = 145/365 (39%), Gaps = 25/365 (6%)

Query: 16  RFSRWHVGLTSTNPSVACLIVKDGIV--IGRGVTAYGGCPHAE---VQALEEAGEEARGA 70
             +    G ++ +P  AC I        + RG     G   AE   V+AL   G   RG 
Sbjct: 69  ALAMSSEGASAPHPLSACAITDANGTTRVARG-HEGQGATRAEIACVEALVRDGVGVRGG 127

Query: 71  TAYVTLEPC-SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           TA V LEP            + ++  G+RRVVV +  P   + GR ++ + ++GI+VD +
Sbjct: 128 TACVNLEPVHGEVAGETRAVEALVTAGVRRVVVGMLHPLPGLRGRAVKAMRERGIVVDVL 187

Query: 130 MESE----------GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
                          +    A L R      +   K A++ D  I      S  +TG  +
Sbjct: 188 DARASGLEGEVAARCRETNEALLYRVATGLPYSVYKYAMTLDGKIATDNGHSSWVTGAEA 247

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           + +V   R ++D I+VG  TV  D+P LTCR        P RI+L     L  D+++ + 
Sbjct: 248 RERVFRERKRADCIVVGGATVRKDNPRLTCREE--TGFQPARIVLSRTLNLPEDAELWRV 305

Query: 240 ALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
             +AP I+ T     P      R K + ++  +     +    +  RG      E G  +
Sbjct: 306 RDVAPTIVCTTKGARPEFQKMLRSKGVEVVEFNELTPLEAAKYMHARGFLRCFWECGGGL 365

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
           A   + S +   ++ + +  +IG    P+PL +   E          V  +  G D+ + 
Sbjct: 366 AAPAMKSGVFHHVMAFVAPKLIGGNSAPTPLGDLGFEAMHDALPLAGVTLETVGRDILVR 425

Query: 354 YIGKN 358
               N
Sbjct: 426 GYVPN 430


>gi|330752436|emb|CBL87386.1| riboflavin biosynthesis protein [uncultured Flavobacteria
           bacterium]
          Length = 310

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 99/305 (32%), Positives = 150/305 (49%), Gaps = 26/305 (8%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG--EEARGATAYVTLEPCSHYGRSPP 87
            V CLIVKD  +IG G T   G  HAEV A++     E  + AT YVTLEPCSH+G++PP
Sbjct: 1   MVGCLIVKDDEIIGEGYTDPYGGSHAEVNAIKSVKNQELLKSATLYVTLEPCSHHGKTPP 60

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQV 146
           C   I+   I RVV+   DP  +V G+G+  L   G  ++  + E+  K+    +LT   
Sbjct: 61  CCDLILSRQIPRVVIGCIDPHEKVCGQGIARLKASGCQVIVGVEEALCKLHHKRFLTYHT 120

Query: 147 EKRSHITLKIAVSQDNMIGMAGC---GSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203
           +KR +I LK A S++  +         +  I+G +S+  VH  RA+  AILVG  TV+ D
Sbjct: 121 KKRPYIILKWAQSKNGFVAPKNKNSNRAFWISGKLSRQLVHQWRAEEQAILVGANTVIKD 180

Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
           +P LT R   +   +P+RI++  + KLS    I      A  I++  +            
Sbjct: 181 NPSLTTR--HVVGKNPIRIVVSNNKKLSRQLNIFNGD--AQTILLNTDK----------- 225

Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
                  D     ++   L  + +TSL+VEGG      F++  L D   ++     I + 
Sbjct: 226 ----FKIDEPIGTQICDKLFSKKITSLIVEGGPKTLDYFLSENLWDEARIFEGNTDI-KE 280

Query: 324 GIPSP 328
           G+ +P
Sbjct: 281 GVKAP 285


>gi|6226765|sp|O24750|RIBD_CORAM RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
           RecName:
           Full=Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase; Includes: RecName:
           Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|21914864|dbj|BAA20053.1| ribG [Corynebacterium ammoniagenes]
          Length = 337

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 105/320 (32%), Positives = 148/320 (46%), Gaps = 30/320 (9%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
            + +  A+       G TS NP V  +I+   G ++G G T   G  HAEVQAL +A  +
Sbjct: 16  EQALRTAMSAGWEVRGTTSPNPPVGAVIISTSGEIVGTGATQPVGGVHAEVQALADAAGK 75

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GATA VTLEPC H GR+ PC Q +IE GI+ V+    DP+    G   Q L   GI V
Sbjct: 76  TEGATAVVTLEPCRHTGRTGPCTQALIEAGIKDVLFLHSDPNPSAGGGE-QVLVDAGINV 134

Query: 127 DRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
            ++   E     L  +L     +R H+TLK A + D     A   S  ITG ++++ VH 
Sbjct: 135 VQLPSPEGVPDALIPWLKSVQLRRPHVTLKFAQTIDGFTAAADGTSQWITGEMARDYVHA 194

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL--QEHSPMRIILDPHFKLSLDSKIIKTALLA 243
            R   DAI++G GT L D+P LT R      +EH P R+++                   
Sbjct: 195 DREHRDAIIIGTGTALIDNPSLTARYPDGTQREHQPRRVVIGRRNI-------------- 240

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
                   D    A    +            + + L  L   G   +LVEGGA +A  F 
Sbjct: 241 -------ADAGDAASNLNRLGFEQYAT----IDEALAELYATGARDVLVEGGAGLASGFA 289

Query: 304 NSRLVDSIILYRSQIVIGEG 323
           N  LVD + +Y++ +++GEG
Sbjct: 290 NQGLVDWLQVYQAPLLLGEG 309


>gi|218191968|gb|EEC74395.1| hypothetical protein OsI_09744 [Oryza sativa Indica Group]
          Length = 396

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 100/359 (27%), Positives = 169/359 (47%), Gaps = 22/359 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           S  D  +M   +  +R   G TS NP V C++V+DG V+G G     G PHAEV AL +A
Sbjct: 48  SDMDGHYMRRCVELARKAAGHTSPNPMVGCVVVRDGRVVGEGFHPKAGQPHAEVFALRDA 107

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G+ A  ATAYV+LEPC+HYGR+PPC + +I   ++ VVV + DP+  V+ +G++ L   G
Sbjct: 108 GDLAENATAYVSLEPCNHYGRTPPCTEALINAKVKDVVVGMTDPNPIVASKGIERLRSAG 167

Query: 124 IIVDRMMESE--GKIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISK 180
           I V   ++ E   +    AY+ R +  ++  TL+  +S +  +I   G G+    G+ S 
Sbjct: 168 IDVRLCVDEEASCRKLNEAYIHRMLTGKAFATLRTTLSMNGVVINQIGSGADQPEGYYS- 226

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
                L  + D +++        +     R  G     P+ II+       L+   +K  
Sbjct: 227 ----QLLKEYDGVIISSNFAKT-NTLPVSREAGA--KQPLYIIIAQGENSQLNIPFLKEE 279

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV---EGG-- 295
             A  ++++  D P+         ++++  D  +L  +L +L  RG+ S+LV   E G  
Sbjct: 280 RAAEAVVLS--DSPITV---EPAGVDVLVLDQMNLDAILQLLAQRGLCSVLVDFREAGGG 334

Query: 296 -AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
            A++ ++F + +LV  +++    +     G       G        V        V L+
Sbjct: 335 IASLLNNFQDDKLVQKVVVELLPVWAVSKGPSDLAFGGSQSFPLKDVEHSEVNGCVLLQ 393


>gi|227549213|ref|ZP_03979262.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078667|gb|EEI16630.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 324

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 109/360 (30%), Positives = 152/360 (42%), Gaps = 42/360 (11%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
           +S  D     AAL       G TS NP V C +   +G +I  G T+  G  HAE+ AL 
Sbjct: 1   MSEIDYH---AALSAGDAVRGATSPNPPVGCALFSPEGELIATGGTSPAGGAHAEINALR 57

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG  ARGATA VTLEPC+H GR+ PCA+ + +  I R+V    DP+ + +G G  +L++
Sbjct: 58  AAGSRARGATAVVTLEPCNHTGRTGPCAKALADAQIARLVYLTTDPNPQAAG-GADYLAR 116

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
            G+ V  + E      L  +LT     R  +TLK A S D         S  ITG  ++ 
Sbjct: 117 HGVEV--VFEPRRVDALVPWLTSIERGRPSVTLKYAASLDGFTAAPDGTSKWITGPAARR 174

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKT 239
            VH  RA  DAI++G GT +AD+P LT R +        P R+++               
Sbjct: 175 HVHADRAVRDAIIIGTGTAIADNPSLTARYDDGSLMATQPRRVVVGTR------------ 222

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
                          V      +                L  L   G   +LVEGGA +A
Sbjct: 223 --------------AVPEGNLTRLGFEQYAT----PDDALEALWESGARDVLVEGGAGLA 264

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
            SF+   LVD +  Y + +++G G    P            +        G DV +E   
Sbjct: 265 ASFLEQGLVDRVQAYAAPLLLGAGTHVVPAALAATLAEAPRYRLTHVTVLGDDVLIEMER 324


>gi|68536087|ref|YP_250792.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Corynebacterium jeikeium K411]
 gi|68263686|emb|CAI37174.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Corynebacterium jeikeium K411]
          Length = 354

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 113/360 (31%), Positives = 163/360 (45%), Gaps = 50/360 (13%)

Query: 17  FSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVT 75
                  L S NP V  +I    G V+GRG T   G  HAEV ALE+AGE+ARG  A VT
Sbjct: 12  LGWQAAQLASPNPPVGAVIEDPSGQVVGRGFTQAPGGAHAEVVALEQAGEKARGGRAIVT 71

Query: 76  LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE-- 133
           LEPC+H GR+ PCA+ +I  GIRRV     DP+  ++  G   L   G+ V         
Sbjct: 72  LEPCNHTGRTGPCAEALIRAGIRRVDFLFADPNP-IAEGGAATLRAAGVEVHGPYLPNPT 130

Query: 134 -----------GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
                          +  +L  + ++R H+ LK+A + D  +      S  ITG  ++  
Sbjct: 131 TSPAAKLPAWSQMYSVEPWLISEAQQRPHVCLKMASTLDGRVAAVDGTSQWITGEPARVA 190

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ----EHSPMRIILDPHFKLSLDSKIIK 238
           VH  R + DAILVG GT++AD+P LT R    +    E  P+R+I+     +   + +  
Sbjct: 191 VHEDRTRRDAILVGTGTIVADNPRLTARDADGRPFPEELQPLRVIMGTS-DIPAGAAVFA 249

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
           T   A                        ++   RD+ ++L  L  R V +LLVEGGA V
Sbjct: 250 TPGRA------------------------LHLQTRDVHEVLAELWKRDVRTLLVEGGAQV 285

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK------NFMCVRRDYFGSDVCL 352
           A +F+ + +VD +  Y +  V+G G       E  L +       F+      FG D+  
Sbjct: 286 AAAFVKADVVDEVQYYAAPAVLGAGVASLSDSENNLGQTIGDIRRFVPRELQVFGQDLRW 345


>gi|116610344|gb|ABK03068.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Arthrobacter sp.
           FB24]
          Length = 386

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 96/322 (29%), Positives = 149/322 (46%), Gaps = 35/322 (10%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE---E 66
           M AAL  +   +G    NP V  +++  DG  +  G     G  HAE  A+ +AG    +
Sbjct: 1   MDAALDAAL--LGPRGANPLVGAVVIGPDGRQLVTGYHRGAGTAHAEADAIAQAGRQGLD 58

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             G+T  VTLEPC+H GR+ PCAQ II+ GI  VV  VDDP    +G G   L   G+ +
Sbjct: 59  LTGSTMVVTLEPCNHCGRTGPCAQAIIDAGIASVVYAVDDPHDPAAG-GAATLRAAGVSV 117

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +           +    + +R  +TL IA + D+ I  A   S  I+   S    H 
Sbjct: 118 RSGLSARAAFELNRRWFEAVLGQRPFVTLHIAQTLDSRIAAADGTSQWISSPESLADNHG 177

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALLA 243
           LR++ DAILVG  T+L D+P LT R    +   + P+R ++     +  D+ I       
Sbjct: 178 LRSRVDAILVGTQTLLVDNPRLTARDASGKPAGNQPLRAVMGLRG-IPDDAAI------- 229

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
                               +  +++   RD  + L  L   GV  ++VEGG+++  +F+
Sbjct: 230 -----------------HGDDGRVLHLPTRDPHEALERLFSAGVRHVMVEGGSSILSAFL 272

Query: 304 NSRLVDSIILYRSQIVIGEGGI 325
            + LVD +I+Y +  ++G G  
Sbjct: 273 AAGLVDELIVYLAPTLLGSGTA 294


>gi|254456442|ref|ZP_05069871.1| riboflavin biosynthesis protein RibD [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083444|gb|EDZ60870.1| riboflavin biosynthesis protein RibD [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 353

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 108/314 (34%), Positives = 170/314 (54%), Gaps = 8/314 (2%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  +R + GLT TNPSV C+IVK   +I  G T+Y G PHAEV A++ + E    A
Sbjct: 1   MDLALDLARSNEGLTGTNPSVGCIIVKHDKIISIGQTSYNGRPHAEVNAIKNSIENLNDA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           T YVTLEPCSH+G +PPC   II+  ++ V+  + D D RV G+  + L  K I +   +
Sbjct: 61  TMYVTLEPCSHHGVTPPCTSSIIKSKLKEVIYSIIDIDQRVKGKTYKILKSKKIKVRTGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           ++ + K F   Y   + +K  +++ KIA+S++N+I      +  IT   S    H LR +
Sbjct: 121 LKKKVKQFYTPYFFNRQKKLPYVSGKIAISKNNLI--FSKKNRKITNIKSDKFTHFLRYK 178

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           +D+IL+   T+  D+P+L CRL GL++ SP RIILD   K + +S + KTA     I   
Sbjct: 179 NDSILISYRTLNKDNPKLNCRLKGLEKFSPKRIILDNKLKTNTNSYLFKTANKENTIFFY 238

Query: 250 ENDDPVLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
                   L F+K  I ++  +       +   +   L   G  ++LVEGG  +  +F++
Sbjct: 239 NEAIKSKILEFKKNKITVLKLNIDNNKRFNPSIIFKKLYTLGCRNVLVEGGDELTKNFVS 298

Query: 305 SRLVDSIILYRSQI 318
           +++ +   L++   
Sbjct: 299 NKIFNQFFLFKGSK 312


>gi|260578782|ref|ZP_05846689.1| riboflavin biosynthesis protein RibD [Corynebacterium jeikeium ATCC
           43734]
 gi|258603080|gb|EEW16350.1| riboflavin biosynthesis protein RibD [Corynebacterium jeikeium ATCC
           43734]
          Length = 354

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 112/362 (30%), Positives = 162/362 (44%), Gaps = 50/362 (13%)

Query: 17  FSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVT 75
                  L S NP V  +I    G V+GRG T   G  HAEV AL++AGE+ARG  A VT
Sbjct: 12  LGWRAAQLASPNPPVGAVIEDSSGQVVGRGFTQAPGGAHAEVVALQQAGEQARGGRAIVT 71

Query: 76  LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR------- 128
           LEPC+H GR+ PCA+ +I  GIRRV     D +   +  G   L   G+ V         
Sbjct: 72  LEPCNHTGRTGPCAEALIRAGIRRVDFLFADLNP-AAEGGAATLRAAGVEVHGPYLPLPT 130

Query: 129 -MMESEGKIFLHAYLTRQV-----EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
              E++   +   Y           +R H+ LK+A + D  +      S  ITG  ++  
Sbjct: 131 AGDEAKLPAWSKMYSVEPWLISMARQRPHVCLKMASTLDGRVAAVDGTSQWITGEPARVA 190

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ----EHSPMRIILDPHFKLSLDSKIIK 238
           VH  R + DAILVG GT+ AD+P LT R    Q    E  P+R+I+     + +D+ +  
Sbjct: 191 VHEDRTRRDAILVGTGTIAADNPRLTARDAEGQPFAEELQPLRVIMGTS-DIPVDAAVFA 249

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
               A                        ++   RD+ ++L  L  R V +LLVEGGA +
Sbjct: 250 APGHA------------------------LHLPTRDVNEVLAELWKRDVRTLLVEGGAQI 285

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK------NFMCVRRDYFGSDVCL 352
           A +F+ + +VD +  Y +  V+G G       E  L +       F+      FG+D+  
Sbjct: 286 AAAFMEADVVDEVQFYAAPAVLGAGVASLSDSENILGQTIGDIRRFIPRELQVFGNDLRW 345

Query: 353 EY 354
             
Sbjct: 346 TM 347


>gi|307106809|gb|EFN55054.1| hypothetical protein CHLNCDRAFT_24125 [Chlorella variabilis]
          Length = 697

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 92/372 (24%), Positives = 148/372 (39%), Gaps = 26/372 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-TAYGGCPHAEVQALE 61
           ++ D R +  A   S+  +G T  +P   C++V  +G+ +      A  G    E  A  
Sbjct: 12  AAKDLRHLLRAAEVSQEPMGQTQPHPYAGCVLVSSEGVPLAEASQWAQQGTEAPECAAAR 71

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +AG  A G TAY+ LE    +G        +   G+ RVVV +  P   + G  L  L  
Sbjct: 72  QAGGAAAGGTAYLNLECGDCHGDR-AAVDALAGAGVARVVVGMRHPLPHLRGTALAQLRA 130

Query: 122 KGIIVDRMMES----------------EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG 165
            G+ V  + E+                       A L R V KR    LK A++ D  I 
Sbjct: 131 AGLRVAVLGEAPCGAGVAGEEAEAALDACLAANEALLHRAVIKRPMGLLKYAMTLDGKIA 190

Query: 166 MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILD 225
                S  ++   S+ +V   RA+SDA++VG  TV  D+P+LT R  G   H PMRI++ 
Sbjct: 191 THTGHSAWVSSAQSRQRVFETRARSDAVIVGGCTVRRDNPQLTTRREG--GHQPMRIVMS 248

Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285
               L  ++K+   +    V+            A R++ + ++  D      +      R
Sbjct: 249 RTLDLPAEAKLWDVSHAPTVVATQRGARRDFQDALRRRGVEVLEFDFLTPDAVARYCYDR 308

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMC 340
           G    L E G  +A   I +  +   + + +  +IG    P+P+ +              
Sbjct: 309 GFLQCLWECGGMLAAPAIATGAIHKAMAFVAPKLIGGSRAPTPVGDLGFVEMTQALPLSE 368

Query: 341 VRRDYFGSDVCL 352
           VR    G D+ L
Sbjct: 369 VRWQQVGPDLML 380


>gi|262202280|ref|YP_003273488.1| riboflavin biosynthesis protein RibD [Gordonia bronchialis DSM
           43247]
 gi|262085627|gb|ACY21595.1| riboflavin biosynthesis protein RibD [Gordonia bronchialis DSM
           43247]
          Length = 333

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 109/318 (34%), Positives = 162/318 (50%), Gaps = 33/318 (10%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  A+  S    G+++ NP V  +IV + G ++G G TA  G PHAE+ AL +AG  ARG
Sbjct: 7   MRQAITESAAAQGVSTPNPPVGAVIVDRAGTIVGVGHTAPPGGPHAEIVALTQAGAAARG 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           ATA VTLEPC+H GR+ PC+Q +I  G+  V   V DP+   +  G   L   G+ VD  
Sbjct: 67  ATAVVTLEPCNHTGRTGPCSQALIAAGVAHVCFGVADPNP-TAAGGADTLRAAGVSVDAG 125

Query: 130 MESEGKI--FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
           + ++      L  +L RQ   R  +T+K+A S D  +  +   S  +TG  ++   H  R
Sbjct: 126 VLADEVAAGPLQPWLHRQTTGRPFVTVKLATSIDGRVAASDGTSQWVTGPAARAHAHERR 185

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           ++ DAI+VG GT LADDP LT R        H P R+++  H  L  D+ +   A  AP+
Sbjct: 186 SRIDAIVVGTGTALADDPSLTARRPDGTRYPHQPTRVVV-GHRDLPADANLRDDA--APL 242

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           + V                        R+  ++L  L       +LVEGG  +A +F+ +
Sbjct: 243 LRVAT----------------------REPAEVLDALDD--ALWVLVEGGPTLAGAFVAA 278

Query: 306 RLVDSIILYRSQIVIGEG 323
            LVDS+  Y + +++G G
Sbjct: 279 GLVDSVEAYVAPVLLGAG 296


>gi|324999324|ref|ZP_08120436.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Pseudonocardia sp. P1]
          Length = 368

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 116/356 (32%), Positives = 173/356 (48%), Gaps = 35/356 (9%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           M  AL  S    G TS NP+V C+++ + G V+G G T   G PHAE  AL EAG+ A G
Sbjct: 32  MRRALAASDLVHGTTSPNPAVGCVVLDRAGAVVGTGATTPPGGPHAERVALAEAGDRAAG 91

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-- 127
            TA VTLEPC+H GR+PPC   ++E GI RV   + DP+  V+  GL  L   GI V   
Sbjct: 92  GTAVVTLEPCNHSGRTPPCVDGLLEAGIARVYAALADPNP-VAAGGLDRLRAAGIEVTLG 150

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            +    G+  L  +L RQ   R H+T K+A + D  +  A   S  ITG  ++ +VH LR
Sbjct: 151 TLAGEVGRGPLRGWLHRQHTGRPHVTWKVATTLDGRVAAADGTSRWITGPEARGEVHDLR 210

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
            + DAI+ G GTVL DDP LT R       +H P+R+++  H  +   +++   A     
Sbjct: 211 RRMDAIVAGTGTVLDDDPALTARRPDGTLFDHQPLRVVV-GHRDVPPGARLSNRA----- 264

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
                                +++   RD  ++L  LV R    +L+EGG  +A +F+ +
Sbjct: 265 ----------------AGEAEVVHLRTRDPGEVLAELVRRDTVDVLLEGGPTLAGAFVAA 308

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356
             VD ++++ +  ++G G  P  L +  +                 G DV ++   
Sbjct: 309 GAVDRVLVHLAPALLGAG--PHALGDAGVGTIADIVRLQVDEVRRSGGDVVIDGRP 362


>gi|304570635|ref|YP_831168.2| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Arthrobacter sp. FB24]
          Length = 407

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 92/310 (29%), Positives = 143/310 (46%), Gaps = 33/310 (10%)

Query: 23  GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE---EARGATAYVTLEP 78
           G    NP V  +++  DG  +  G     G  HAE  A+ +AG    +  G+T  VTLEP
Sbjct: 32  GPRGANPLVGAVVIGPDGRQLVTGYHRGAGTAHAEADAIAQAGRQGLDLTGSTMVVTLEP 91

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIF 137
           C+H GR+ PCAQ II+ GI  VV  VDDP    +G G   L   G+ +   +        
Sbjct: 92  CNHCGRTGPCAQAIIDAGIASVVYAVDDPHDPAAG-GAATLRAAGVSVRSGLSARAAFEL 150

Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
              +    + +R  +TL IA + D+ I  A   S  I+   S    H LR++ DAILVG 
Sbjct: 151 NRRWFEAVLGQRPFVTLHIAQTLDSRIAAADGTSQWISSPESLADNHGLRSRVDAILVGT 210

Query: 198 GTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
            T+L D+P LT R    +   + P+R ++     +  D+ I                   
Sbjct: 211 QTLLVDNPRLTARDASGKPAGNQPLRAVMGLRG-IPDDAAI------------------- 250

Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
                   +  +++   RD  + L  L   GV  ++VEGG+++  +F+ + LVD +I+Y 
Sbjct: 251 -----HGDDGRVLHLPTRDPHEALERLFSAGVRHVMVEGGSSILSAFLAAGLVDELIVYL 305

Query: 316 SQIVIGEGGI 325
           +  ++G G  
Sbjct: 306 APTLLGSGTA 315


>gi|284991537|ref|YP_003410091.1| riboflavin biosynthesis protein RibD [Geodermatophilus obscurus DSM
           43160]
 gi|284064782|gb|ADB75720.1| riboflavin biosynthesis protein RibD [Geodermatophilus obscurus DSM
           43160]
          Length = 358

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 118/365 (32%), Positives = 183/365 (50%), Gaps = 35/365 (9%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59
           M VS+ +   M+ A       +G TS NP+V  +++  DG  +G G TA  G PHAEV+A
Sbjct: 1   MTVSAAELSAMARARELGAGVLGTTSPNPAVGAVVLAADGTPVGEGATAPPGGPHAEVRA 60

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           LE+AGE A G TA VTLEPC+H GR+ PCA  ++  G+ RVVV V +P  +++G G   L
Sbjct: 61  LEQAGERACGGTAVVTLEPCAHTGRTGPCADALLAAGVARVVVAVPEP-TQLAGGGAARL 119

Query: 120 SQKGIIVDRM--MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
              G+ V+     ++  +  L A+LT   E R  +  K+A + D  +  A   S  +TG 
Sbjct: 120 RAAGVEVELGVAQQAAEEGALGAWLTGVREGRPFVVWKVAGTLDGRVAAADGSSRWVTGP 179

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSK 235
            ++  VH LRA  DA+++G GT LADDP+LT R    ++    P+R++LD   +L   ++
Sbjct: 180 DARAAVHRLRATCDAVVIGSGTALADDPQLTVRDADGRDAARQPLRVVLDRRRRLPRTAR 239

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
           ++  A  AP ++ T                          ++LL  L  R V  +L+EGG
Sbjct: 240 VLDDA--APTLVSTAAS----------------------PRELLGELFARDVRRVLLEGG 275

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVC 351
             +A +F+   LVD  +++ +  ++G  G P   + G                + G DV 
Sbjct: 276 PTLAAAFLRDGLVDEAVVHLAPKLLGA-GAPLVGDLGITGIGNALTLTVTGLTHLGGDVE 334

Query: 352 LEYIG 356
           +    
Sbjct: 335 IRLRP 339


>gi|311113483|ref|YP_003984705.1| riboflavin biosynthesis protein RibD [Rothia dentocariosa ATCC
           17931]
 gi|310944977|gb|ADP41271.1| riboflavin biosynthesis protein RibD [Rothia dentocariosa ATCC
           17931]
          Length = 415

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 97/360 (26%), Positives = 154/360 (42%), Gaps = 32/360 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA-- 63
           D R MS A+  +R   G+   NP V  +I    G V+  G     G PHAE   L +A  
Sbjct: 44  DDRAMSLAIEAAR--QGIRGANPLVGAVITNSAGQVLHIGWHRGAGTPHAEADVLAQARA 101

Query: 64  -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
            G +   A  YV+LEPC+H G++ PC+  I E GI +V     D     +  G ++L   
Sbjct: 102 AGTDMSDAKMYVSLEPCNHTGKTGPCSHAIKEAGISQVFYAYPDRSA-QASGGAEYLRSH 160

Query: 123 GIIVDRMME--SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           G++   M E   +       +     EKR  IT+K A + D  I  A   S  ITG  ++
Sbjct: 161 GVVTTYMREFAEDSYALNERWFISVAEKRPFITVKSASTLDGFIAAADGTSKWITGSQAR 220

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIK 238
              HL+R ++DA+++G  T L D+P L  R       +  P+R+++     +    K+  
Sbjct: 221 ADGHLIRKRADAVMIGTRTTLLDNPSLDARDISGQRYKKQPLRVVM-GETDIPSTYKVCG 279

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
                P                     N +     + + LL  L  RGV  L++EGG  +
Sbjct: 280 LGTRDP--------------------ENYMQVYTHEPRVLLDELYSRGVRHLMIEGGPGM 319

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
              F    L+D ++ YR+ I++G G            +N   ++ D  G    +  +G++
Sbjct: 320 VGLFTGEDLLDELVWYRAPILMGHGKSAMYRLITNTLENAPRLQLDDLGMFPSVRVLGED 379


>gi|296129704|ref|YP_003636954.1| riboflavin biosynthesis protein RibD [Cellulomonas flavigena DSM
           20109]
 gi|296021519|gb|ADG74755.1| riboflavin biosynthesis protein RibD [Cellulomonas flavigena DSM
           20109]
          Length = 386

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 112/359 (31%), Positives = 167/359 (46%), Gaps = 38/359 (10%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEE 62
           ++ +   M  A   +    G    NP V C+++ + G V+G G     G PHAEV AL +
Sbjct: 33  AAHELAAMRHAFGLAE--QGPLGPNPRVGCVLLDRAGAVVGEGWHRGAGTPHAEVAALAD 90

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G + RGATA VTLEPC H GR+ PC+  +++ G+ RVVV V DP+  V+  G Q L
Sbjct: 91  ARERGADVRGATAVVTLEPCDHTGRTGPCSVALLQAGVGRVVVSVQDPNP-VAAGGAQRL 149

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              G+ +V  ++  EG   L A+L      R  +TLK+A S D     A   S  IT  +
Sbjct: 150 RAAGVDVVTGVLADEGTRTLGAWLPAVRRGRPFVTLKLAASLDGRAAAADGSSRWITSDV 209

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKI 236
           ++   H LRA+  AI+VG GT L DDP LT R       EH P+R+++  H ++   +++
Sbjct: 210 ARRHAHGLRAEVGAIVVGTGTALVDDPSLTARTGDGSLVEHQPLRVVV-GHREVPAGARL 268

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
                                   R     ++     D   +L  L  R V  +LVEGG 
Sbjct: 269 ------------------------RGPGGELVQVRTHDPAVVLAALHEREVRHVLVEGGP 304

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCL 352
            +A +F+ + LVD +  Y + +++G G        +           V     G DV +
Sbjct: 305 TLAAAFLAAGLVDEVHAYVAPVLLGAGRAAVGDLGVATIADALRLTPVDVVPLGPDVLV 363


>gi|240172784|ref|ZP_04751443.1| bifunctional riboflavin biosynthesis protein RibG [Mycobacterium
           kansasii ATCC 12478]
          Length = 339

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 107/360 (29%), Positives = 166/360 (46%), Gaps = 40/360 (11%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
              M  A+  S    G T  NP V  +IV  +G V+G G T   G  HAEV AL  AG  
Sbjct: 10  EDAMRLAIDQSYLVKGSTYPNPPVGAVIVDTEGRVVGVGGTQPTGGDHAEVVALRRAGGL 69

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           A GA A VT+EPC+HYG++PPC   +IE  +  V+  V DP+  ++G G   LS  G+ V
Sbjct: 70  AAGAIAVVTMEPCNHYGKTPPCVNALIEARVGTVIYGVADPN-GIAGGGAGRLSAAGVQV 128

Query: 127 DRMMESEGKI--FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
              + ++      L  +L +Q     H+T K A S D     A   S  I+   ++  +H
Sbjct: 129 RSGVLADHVAAGPLREWLHKQRTGLPHVTWKYATSVDGRSAAADGSSQWISSEAARADLH 188

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALL 242
             RA +DAI+VG GTVLADDP LT RL    L    P+R+++     +  ++K++     
Sbjct: 189 RRRAIADAIVVGTGTVLADDPALTARLPDGSLAPKQPLRVVVGTR-DIPPEAKVLNDDAR 247

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
                                    +     +  ++L  L+    T +L+EGG  VA +F
Sbjct: 248 T------------------------MVLRTHEPVEVLRALLDY--TDVLLEGGPTVAGAF 281

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLEYIGK 357
           +    +  I+ Y + I++G  G  + +++  +      +R  +      G D+ L  I +
Sbjct: 282 LRCGAISRILAYVAPILLG--GPVTAVDDVGVSSIAHALRWQFDSVEKVGPDLLLSLIPR 339


>gi|260904122|ref|ZP_05912444.1| riboflavin biosynthesis protein RibD [Brevibacterium linens BL2]
          Length = 359

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 112/368 (30%), Positives = 168/368 (45%), Gaps = 45/368 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE 61
            +  +   MSAAL+ +R   G    NP V   I+ +D  ++  G  A  G PHAEV A+ 
Sbjct: 5   FTELETTAMSAALQAARN--GHRGANPLVGAAILTRDSQIV-VGHHAGAGSPHAEVDAIT 61

Query: 62  EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            A   G +   +T +VTLEPC+H GR+ PC Q II+ GI  VV  + D +  V+  G   
Sbjct: 62  TAIDLGVDLTASTLFVTLEPCNHIGRTGPCTQAIIDAGIPEVVFALSDSN-GVAAGGGAT 120

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           L++ G+ +   +   E       +      +R  +T+KIA S D M+  +   S  IT  
Sbjct: 121 LAEAGVRVRSGLGHDESSALNARWSRAVDAERPFVTVKIAQSLDGMVAASDGTSQWITSA 180

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSK 235
            S+   H  R++ D ILVG GTVLADDP L  R  G    E  P+ I+L     L  +S 
Sbjct: 181 ASRVHSHKYRSRVDGILVGTGTVLADDPRLNARGPGGDPLESQPVPIVL-GLTSLPSES- 238

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
                                   F   N + ++   RD+   L  L  RG+  +LVEGG
Sbjct: 239 ------------------------FLALNPDTVHLRTRDITAALGELHARGMRHILVEGG 274

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIP-SPLEEGYLEKNFMCVRRD-------YFG 347
            +V  +F  + +VD +  Y++ +++G G    S L    L +    V  +         G
Sbjct: 275 PSVLGAFFAAGVVDEVFCYQAPLLVGAGTSSLSGLGTSTLSEAVGLVSDETAEPAITQLG 334

Query: 348 SDVCLEYI 355
           +DV L ++
Sbjct: 335 ADVLLHFV 342


>gi|326388321|ref|ZP_08209917.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207053|gb|EGD57874.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 321

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 119/357 (33%), Positives = 160/357 (44%), Gaps = 44/357 (12%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             DA +M +A   +     L+  NP+V  ++V++  V+GRG T  GG PHAE +AL  AG
Sbjct: 2   PTDADWMRSAAALAARGRPLSRPNPAVGAVLVRENRVVGRGFTRAGGRPHAEAEALAMAG 61

Query: 65  EEARGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           +  RGAT YVTLEPC+H   R P CA  ++     RVVV   DPD R +G+G+  L   G
Sbjct: 62  DATRGATLYVTLEPCAHVSPRGPACADLVVAARPARVVVGCTDPDPRTAGQGIARLRDAG 121

Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
           I VD +     +  L  YL R  E R  +TLK+A S D  I +    S  ITG  ++   
Sbjct: 122 IAVDLIDCPAARASLAGYLRRTREGRPEVTLKLATSLDGRIALPSGESRWITGDAARAHA 181

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           H  RA++DAILVG GT+  D P L  RL GL E SP+R                      
Sbjct: 182 HAERARADAILVGGGTLRIDAPRLDVRLPGLAERSPLR---------------------- 219

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
              ++T    P    A         + D                  L VEGGA  A  F+
Sbjct: 220 --WVLTRGTAPDGWSAVSDITAPGAFDDA---------------QYLFVEGGAQAAAHFL 262

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEE----GYLEKNFMCVRRDYFGSDVCLEYIG 356
              +VD ++LYR+ I+IG+G                  +  V     G+D    Y  
Sbjct: 263 AVDMVDRLLLYRAPILIGDGLAAIGDIGLDRLDAAHGRWQLVSHRALGNDTLEIYER 319


>gi|229006420|ref|ZP_04164086.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides Rock1-4]
 gi|228754830|gb|EEM04209.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides Rock1-4]
          Length = 278

 Score =  235 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 81/279 (29%), Positives = 132/279 (47%), Gaps = 12/279 (4%)

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
           ++RVV+   D +  VSG G + L + GI +   ++E E       +      K   +T+K
Sbjct: 1   MKRVVIATLDCNPLVSGSGAKRLQKAGISVTTSVLEEEATALNRYFFHYMKTKLPFVTIK 60

Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215
            A+S D  I      S  ITG +++  VH  R   DAIL+G+ TV+AD+P LT RL    
Sbjct: 61  TAMSLDGKIATTTGESKWITGEVARTDVHQYRHTHDAILIGVNTVIADNPSLTTRLPNG- 119

Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--R 273
              P+RIILD H +  L S +I   +    IIV ++ +      +  + ++++       
Sbjct: 120 GKHPIRIILDTHLRTPLSSHVITDEMAPTWIIVGKDVNKEKIAGYESQAVSVLQMKTSQI 179

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           +++ LL +L  + + SL VEGG +V  SF+ ++  + I+ Y S  +IG    P+      
Sbjct: 180 EIRDLLLLLGEKQILSLFVEGGQSVHASFLETKCFNEIVTYISPKLIGGKDAPTMFGGTG 239

Query: 334 LEK-----NFMCVRRDYFGSDVCLEYIGKN---LCLQEL 364
             K     +         G D+ +    +N    CLQEL
Sbjct: 240 FIKLQDAISLQIQEMKQIGDDIKIVASVRNEVPACLQEL 278


>gi|325522583|gb|EGD01124.1| pyrimidine deaminase [Burkholderia sp. TJI49]
          Length = 221

 Score =  235 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 88/221 (39%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M  AL  +   +  T+ NP V C+IVK G VIG G T   G  HAEVQAL++
Sbjct: 2   FSDIDFAHMQRALALAARGMYTTTPNPRVGCVIVKGGDVIGEGYTQPAGHDHAEVQALKD 61

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G +  G+T YVTLEPCSH+GR+PPCA  +IE  + +VV  ++DP+ +VSGRGL  L
Sbjct: 62  ARARGHDVAGSTVYVTLEPCSHFGRTPPCANALIEARVAKVVAAMEDPNPQVSGRGLGML 121

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              GI +   ++  E       +++R    R  + +K A + D    +    S  ITG  
Sbjct: 122 RDAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKSAATLDGRTALPSGESQWITGDA 181

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219
           ++   H  RA++ AIL GIGTV  D+P LT R        P
Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVR-GIDTPRQP 221


>gi|296448857|ref|ZP_06890691.1| riboflavin biosynthesis protein RibD [Methylosinus trichosporium
           OB3b]
 gi|296253636|gb|EFH00829.1| riboflavin biosynthesis protein RibD [Methylosinus trichosporium
           OB3b]
          Length = 375

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 138/368 (37%), Positives = 185/368 (50%), Gaps = 13/368 (3%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P +  D  FM+AAL F R ++G T  NP+V  LIVKDG+VI RG TA GG PHAE  A+ 
Sbjct: 6   PFAQQDDAFMAAALAFGRRNMGRTGPNPAVGALIVKDGVVIARGATAVGGRPHAEAVAVA 65

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AGE ARGAT Y TLEPCSH+G +PPC   II  GI RVV  ++DPD RV+GRG   L +
Sbjct: 66  AAGEAARGATLYATLEPCSHHGATPPCVDAIIGAGIARVVSALEDPDARVAGRGHARLRE 125

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV-PITGFIS 179
            GI +   +   E +     ++ R  + R  +TLK+A + D     A       ITG ++
Sbjct: 126 AGIEVAVGVRAREARADHLGHILRVTQGRPLVTLKLAQTADGYAAGAEHDPRLFITGAVA 185

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
               H+ RA   AI++G GT   DDP LT RL GL+   P+R++LD   +LS  S++  T
Sbjct: 186 DAATHIERALHGAIMIGAGTASVDDPLLTVRLPGLEGVKPLRVVLDAGLRLSRRSRLAAT 245

Query: 240 ALLAPVIIVTEND-------DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
           A   P +++           +   A A     +         L   L  L  RGVT +  
Sbjct: 246 ARETPTLVIAGEKVAEAAAAEFFDATAIEVARVAQEASGRLVLSAALAELAARGVTRVFS 305

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG--IPSPLEEGYLEKN--FMCVRRDYFGS 348
           EGG  VA S +   L D ++L+  +  +G  G    SP     LE    +        GS
Sbjct: 306 EGGPRVAESLLLGALADEVVLHTGRKPLGRPGRLALSPAARARLEDRAAYRLADEAMLGS 365

Query: 349 DVCLEYIG 356
           D    Y  
Sbjct: 366 DHMTRYER 373


>gi|291334222|gb|ADD93888.1| predicted diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [uncultured marine bacterium MedDCM-OCT-S08-C1463]
          Length = 348

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/333 (23%), Positives = 143/333 (42%), Gaps = 19/333 (5%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+ F+S A+               V C+IVK+  +IGRG     G  HAE+ A+ +  E+
Sbjct: 3   DSFFISEAISLGLKGRFTAKPGVKVGCVIVKENRIIGRGFYEKYGGSHAEINAINDVKEK 62

Query: 67  AR--------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            +        G+  +VTLEPCS  G++  C   + +   +R+VV   DP    +  G+  
Sbjct: 63  YKKNYLSKLSGSDLFVTLEPCSKKGKTGACVNELKKYDFKRIVVGTKDP----TQNGINN 118

Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
           L   G  +  +   + +    ++  +    +  +  K+A+S D+    A      ITG  
Sbjct: 119 LQSAGYELKNLNNQQCQALNESFFHKVKSNKPFVRAKVAMSSDHKSVFASKQRKWITGIP 178

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDS 234
           ++N V  LRA++D IL G GT+  D+P +  R    +       P R +      L+  +
Sbjct: 179 ARNNVQTLRAEADIILTGAGTINEDNPSMNVRSKKIIANKNFVQPERYVFSNSLNLNWSA 238

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLV 292
              K      V++ ++ + P L       ++  +  +   L  +  +  +    V ++L+
Sbjct: 239 PFFKLPGK-KVVVTSKKNLPKLPQGINDISLMSLKKNSNSLSSEDFIKRISKLNVNNILI 297

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           E G  +  SF +  L+D  I Y S   +G   +
Sbjct: 298 EAGPRLLGSFGDYGLIDEYIFYISPEKLGTKAL 330


>gi|75761017|ref|ZP_00741020.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|74491503|gb|EAO54716.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase  /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
          Length = 284

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 82/283 (28%), Positives = 131/283 (46%), Gaps = 12/283 (4%)

Query: 93  IECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSH 151
                +RVV+   D +  VSG G + L +  I +   ++E+E  +    +      KR  
Sbjct: 3   HRKRSKRVVIATLDCNPLVSGNGKRRLEEARIEVTTGVLEAEAVLLNRYFFHYMKTKRPF 62

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
           +T+K A+S D  I      S  ITG  ++  VH  R   DAILVG+ TV+AD+P LT R+
Sbjct: 63  VTIKTAMSLDGKIATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRI 122

Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD 271
                  P+R++LD H +    S +I   L    IIV ++       ++  KNI I   +
Sbjct: 123 PNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTWIIVGKDVKKEKISSYNSKNIAIFQME 181

Query: 272 CR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
            +  +++ LL+ L  + + SL VEGG ++  SF+ +   + I+ Y S  +IG    P+  
Sbjct: 182 TKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFLKTNNFNEIVTYISPKLIGGKDAPTLF 241

Query: 330 EEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN---LCLQEL 364
                 K     +         G D+ +    +N    CLQEL
Sbjct: 242 GGNGFSKLQDALSLKIQEMKQIGDDIKIVANARNEVTECLQEL 284


>gi|261417115|ref|YP_003250798.1| riboflavin biosynthesis protein RibD [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373571|gb|ACX76316.1| riboflavin biosynthesis protein RibD [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302326859|gb|ADL26060.1| riboflavin biosynthesis protein RibD [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 421

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 124/419 (29%), Positives = 185/419 (44%), Gaps = 78/419 (18%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  AL  + + +G +  NP+V  ++VKDGIV+G+G T   G  HAEV AL +AGE ARG
Sbjct: 8   FMQFALEQAFFAIGESRPNPAVGAVVVKDGIVVGKGRTQRPGSAHAEVMALRDAGELARG 67

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           A+ +VTLEPC HYGR+PPC + IIE GI++V     DP+  V G+  + L + G+ V   
Sbjct: 68  ASIFVTLEPCCHYGRTPPCTKAIIEAGIQKVYFAHSDPNPVVHGKSRKILEEAGVEVHEG 127

Query: 130 ME-------------------------------------------SEGKIFLHAYLTRQV 146
           ++                                           +E + +  AY     
Sbjct: 128 VDACILACVEDCSNGESCTECRVFEFTSSLPLDKASREAEGLAVFAEVERYFEAYDYFVS 187

Query: 147 EKRSHITLKIAVSQDNMIG----MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
            KR+ + +K AVSQD  +G          + IT   +    H LRA SDA+LVG GT+LA
Sbjct: 188 TKRTFVEVKSAVSQDGFMGCVDKAGNHLPLAITKQGANCWNHELRAMSDAVLVGAGTLLA 247

Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLD----SKIIKTALLAPVIIVTENDDPVLAL 258
           D+P L  R      ++P++I+   H + + D     KI   +   P I+ +    P L  
Sbjct: 248 DNPGLDVRYAA--GNNPVKIVWAGHHEFTADEISRLKIFSASDAKP-IVFSCVAQPKL-- 302

Query: 259 AFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI----------NSR 306
                   I+  D    + + ++  L  RG+  L+VE GA +A                 
Sbjct: 303 -LNVAECVILLNDSFAENWRAMVDDLSARGMHRLMVEPGAGLARELFNGAAVAQSQNAQP 361

Query: 307 LVDSIILYRS---------QIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
           L + + L+RS         + +I  G + + LE   L  N +       G DV   Y  
Sbjct: 362 LWNRLDLWRSTDSSVDIALENLIESGAVKAGLEYPELPANIVAKESAVIGPDVLTVYYP 420


>gi|38233905|ref|NP_939672.1| putative riboflavin biosynthesis protein [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200166|emb|CAE49847.1| Putative riboflavin biosynthesis protein [Corynebacterium
           diphtheriae]
          Length = 334

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 89/311 (28%), Positives = 148/311 (47%), Gaps = 35/311 (11%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGAT 71
           AA++      G T  NP V  +++  +G ++GRG T   G  HAE+ AL +AGE  +G T
Sbjct: 10  AAVQEGEKAWGTTHPNPPVGAVVLSSNGSIVGRGHTQPPGGSHAEIMALRQAGENTKGGT 69

Query: 72  AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
             VTLEPC+H+GR+ PC+  I E GI  VV  + D    +   G ++L ++G+ V  +  
Sbjct: 70  LVVTLEPCNHWGRTGPCSHAISESGIEHVVYLMQDTGS-LEKGGAEYLRRQGLKVTFLGL 128

Query: 132 SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191
           S     L  +   +     ++  K A + D  +      S  ITG  S++  +  R   D
Sbjct: 129 S--VAALIPWQASKDRGWPYVVGKTAHTLDGFVAAEDHSSKWITGSASRDYANRQRRHFD 186

Query: 192 AILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           AI+VG GTV AD+P LT R +      H P+++++    K+S  +++ ++          
Sbjct: 187 AIIVGTGTVKADNPALTARKDDGTLLPHQPLKVVIGTS-KISEGTQLARSG--------- 236

Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
                              +     +++ L  L  RGV  +LVEGG  + H F+ S  +D
Sbjct: 237 -------------------FVQFSTIEEALVQLWDRGVRYVLVEGGPHLLHGFLTSGNLD 277

Query: 310 SIILYRSQIVI 320
            +  Y + +++
Sbjct: 278 QLHSYSAPMLL 288


>gi|28493654|ref|NP_787815.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Tropheryma
           whipplei str. Twist]
 gi|28476696|gb|AAO44784.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Tropheryma
           whipplei str. Twist]
          Length = 371

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 95/361 (26%), Positives = 152/361 (42%), Gaps = 31/361 (8%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE-EAR 68
           M  A+  ++    +   NP V C+I+ +D  +I +G     G  HAE+ AL  A    + 
Sbjct: 16  MHRAITIAQHG-PVFDRNPQVGCVILDRDYQLISQGWHMGSGSEHAEIMALRGAKSILSE 74

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
             TA +TLEPCS  G++ PC + +++ G++ VV  V DP+      G + LS+ G+ I  
Sbjct: 75  PYTAVITLEPCSSAGQTGPCVRALLDAGVKHVVFGVHDPE----SSGAKVLSEAGVKITY 130

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++E E       ++  +V K   +  K A   D  +      S  ITG  ++   H++R
Sbjct: 131 GVLEREVWGLCAKHILPKVRKTPWVIAKRAQGLDGRMSAPDGSSKWITGPYARGHAHVIR 190

Query: 188 AQSDAILVGIGTVLADDPELTC--RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +Q DAI +G  T+  D+P L        L    P  +I     + S  +           
Sbjct: 191 SQVDAIAIGSNTLCCDNPSLRAFHPAGHLYAKQPKVVIFSGRPRRSNTA----------- 239

Query: 246 IIVTENDDPVLALAFRKKNI---NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
                     L    R   +   +      +DLKK +  L   GV SLL+EGG  +  SF
Sbjct: 240 ----GRGSCELGRCVRGHEVFARDPTILSGKDLKKDMRRLYELGVRSLLLEGGPTLLSSF 295

Query: 303 INSRLVDSIILYRSQIVIGE--GGIPSPLEEGYLEKNFMCVRRDYFGS-DVCLEYIGKNL 359
           +   LVD   +Y +  ++G   G I   +E       F       FG  ++ +  I    
Sbjct: 296 VREDLVDEFYIYTAPKLLGGGYGDINIGVESISDSFAFQLNSVTRFGDNNLLIRAIKPIQ 355

Query: 360 C 360
           C
Sbjct: 356 C 356


>gi|254445886|ref|ZP_05059362.1| riboflavin biosynthesis protein RibD [Verrucomicrobiae bacterium
           DG1235]
 gi|198260194|gb|EDY84502.1| riboflavin biosynthesis protein RibD [Verrucomicrobiae bacterium
           DG1235]
          Length = 377

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 84/358 (23%), Positives = 144/358 (40%), Gaps = 15/358 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR-G 69
           M  AL  +R   G T   P +   +V+ G V+        G    EV+  E  G + + G
Sbjct: 1   MKVALEEARKGWGCTHPQPMIGAALVEAGQVVATSYIEQPGSTAPEVRLFERLGRKPKEG 60

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           A+ ++TLEP     R     + II+ G+  VV+   DP    + +G   L + G+ V+R 
Sbjct: 61  ASLFLTLEPGPSSNRLESGVRAIIDSGVSYVVIGASDPMPEHANKGADALKEGGVKVERR 120

Query: 130 MESEGKIFLHAYLTRQ-VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +  E    L+         +      K A + D  I      S  ITG  ++  V   R 
Sbjct: 121 ILIEDCEDLNIISNFWVQNRIPIFAAKSATTLDGKIACRSGESKWITGEQARQNVMKWRR 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII----KTALLAP 244
              +I VG GT++ DDP LT R+ G  E  PMR + D   + ++   +            
Sbjct: 181 LFPSIAVGAGTLVEDDPRLTSRIEGEPEWCPMRFVFDGLLRTAMGQYLPSIYTDDFRDNT 240

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR----GVTSLLVEGGAAVAH 300
           +++ T+            + +N+      ++K   ++   R    G+  +  EGG+ +  
Sbjct: 241 IVVTTDAAGTGYIRRLETEGVNVWVLPVENMKVPFSVFRKRCADVGINGVYFEGGSRLVS 300

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
             ++ R ++    YR+ I++G+    S       EK         VR + FG D  + 
Sbjct: 301 ELLHMRELNYHFNYRAPILLGDDKAKSVYRGLRTEKLAQAIRLEKVRHEMFGDDQLMR 358


>gi|172040661|ref|YP_001800375.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Corynebacterium urealyticum DSM 7109]
 gi|171851965|emb|CAQ04941.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Corynebacterium urealyticum DSM 7109]
          Length = 357

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 113/354 (31%), Positives = 159/354 (44%), Gaps = 39/354 (11%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGAT 71
            A        G T  NP V C+IV   G ++GRG T   G  HAEV AL+ AG  A GAT
Sbjct: 21  LADEMGWQAAGSTRPNPPVGCVIVDSAGTILGRGATEPAGGRHAEVVALQAAGARAAGAT 80

Query: 72  AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
           AY TLEPC+H GR+ PCA+ +I  G+  V     DP     G G + L   G+ V     
Sbjct: 81  AYATLEPCNHTGRTGPCAEALIAAGVAEVHYLFADPGKAEGGGG-ERLRAAGVTVSGPYL 139

Query: 132 SEGKIFLHAYLTRQVEK-----RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
               +  H +      +     R H+TLK A + + M       S  ITG  ++  VH  
Sbjct: 140 EPFHLGEHRFSVEPWLRAAYLGRPHVTLKFASTLNGMAAATDRTSQWITGPTARADVHAD 199

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           R   +AILVG GTVLADDP+LT R  G++    P+R  +    ++   +++++    A  
Sbjct: 200 RQYREAILVGTGTVLADDPQLTARPGGVEGPRQPLRFAVGQR-EIPSSARLLQPGAHA-- 256

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
                              +   +   RDL+  LT L  +G++ +LVEGG  +A SF+  
Sbjct: 257 -------------------LAGQHLPTRDLEAALTTLRRQGISDVLVEGGPELAGSFLAH 297

Query: 306 RLVDSIILYRSQIV-------IGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            LVD I  Y +          +G+GGI S        + F        G D+  
Sbjct: 298 GLVDEIRAYLAPAWLPRGLPALGDGGIGSTSITDL--QRFATRSVQRIGEDILW 349


>gi|303277803|ref|XP_003058195.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460852|gb|EEH58146.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 628

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 89/372 (23%), Positives = 144/372 (38%), Gaps = 24/372 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
           V+  D   ++ A+  +    GLT  +P   C++V  DG V+        G   AEV A +
Sbjct: 55  VTLADLEHVARAVELAGESDGLTQPHPKSGCVLVAADGGVVAETFQLGQGGARAEVLAAD 114

Query: 62  EAGEEARGATAYVTLEPC-SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            A   A G  AY+ LEP   +          +   G+ RVV+ +  P        +  L 
Sbjct: 115 AANGGAAGGCAYLNLEPVHGNDAGEDAGVNALHRAGVTRVVIGIAHPIPGTRHAAVDALR 174

Query: 121 QKGIIVDRMMESEGK------------IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG 168
            +G+ V  + + +                  A L R    R    LK A++ D  I    
Sbjct: 175 ARGVHVVVLGDDDLDEREEEAKQRGEAARNRALLYRVATGRPFSVLKYAMTVDGKIATTS 234

Query: 169 CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF 228
             S  +TG  ++  V   RA+SDA++VG  TV  D+P LT R      H P R++L    
Sbjct: 235 GHSSWVTGPTARGAVWAERARSDAVVVGGSTVRRDNPNLTTRR--KDGHLPARVVLSRTM 292

Query: 229 KLS-LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
            L    + +  T+    +++      P      R+  + +I  D      +      RG 
Sbjct: 293 DLPGPRTNLWDTSEAPTIVMTRTGARPEFQAQLRELGVEVIEFDDLTPSAVAEYCGKRGY 352

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG--IPSPLEEGYLEKNFMCVRRDY 345
             L  E G  +A   +N  ++  ++ + +  +IG  G   PSP+ E  L+     +    
Sbjct: 353 LQLFWECGGGLAAPALNDGVIHHVMAFIAPKIIGSSGGPAPSPVGETGLDLMTDAMTLRG 412

Query: 346 F-----GSDVCL 352
                 G DV L
Sbjct: 413 LALSTHGRDVLL 424


>gi|297804068|ref|XP_002869918.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
           lyrata subsp. lyrata]
 gi|297315754|gb|EFH46177.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 426

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 91/360 (25%), Positives = 163/360 (45%), Gaps = 21/360 (5%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D+ +M   +  ++  +G TS NP V C+IVKDG ++G+G     G PHAEV AL +AGE
Sbjct: 73  DDSFYMRKCVELAKRAIGCTSPNPMVGCVIVKDGDIVGQGFHPKAGQPHAEVFALRDAGE 132

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            A  ATAYV+LEPC+HYGR+PPC + +I+  ++RVVV + DP+  VS  G+  L   GI 
Sbjct: 133 LAENATAYVSLEPCNHYGRTPPCTEALIKAKVKRVVVGMVDPNPIVSSSGISRLKDAGID 192

Query: 126 VDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQD-NMIGMAGCGSVPITGFISKNQV 183
           V   +E E  K     ++ R + ++  + L+ ++S +   +   G G+    G+ SK   
Sbjct: 193 VTVGVEEELCKKMNEGFIHRMLTEKPFLALRYSMSVNGCFLDKIGEGASDSGGYYSK--- 249

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF-KLSLDSKIIKTALL 242
             L  + DAI++           ++ +        P++II+  +  +  + +        
Sbjct: 250 --LLQEYDAIILSSSLSDELS-SISSQEATNVSIQPIQIIVARNAQQSPILASSNTVEES 306

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL---------VE 293
            P +++    + +         +  +  +  +L  +L     RG+ S+L         +E
Sbjct: 307 GPKVVLFTAKELLAESGISSSGVETVVLEKINLDSILDYCYNRGLCSVLLDLRGNVKDLE 366

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
               +       +L+  +I+        +        +    K    ++    G +V LE
Sbjct: 367 ---VLLRDGFEQKLLQKVIIEVLPEWSTKDERQIASMKWLESKQVKDLQSKQLGGNVLLE 423


>gi|256378033|ref|YP_003101693.1| riboflavin biosynthesis protein RibD [Actinosynnema mirum DSM
           43827]
 gi|255922336|gb|ACU37847.1| riboflavin biosynthesis protein RibD [Actinosynnema mirum DSM
           43827]
          Length = 341

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 100/324 (30%), Positives = 145/324 (44%), Gaps = 30/324 (9%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
              M+ AL  +         NP V C+++  DG V+  G     G  HAE  AL EAG  
Sbjct: 5   HEAMARALELAATPGVPLGPNPRVGCVLLADDGTVVAEGHHRGAGTAHAEADALAEAGAA 64

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           ARG TA VTLEPC+H GR+ PCA+ ++E G+RRVV    DP+  V+  G + L   GI +
Sbjct: 65  ARGTTAVVTLEPCNHTGRTGPCARALVEAGVRRVVFAQSDPNP-VATGGTRTLRDAGIEV 123

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
              +M    +    A++      R  +T K A S D     A   S  I+   ++  VH 
Sbjct: 124 EHGLMADRARALNRAWVFGVEHGRPLVTWKFAASLDGRSAAADGTSRWISNSAARADVHR 183

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALLA 243
           LRA  D +LVG  T + DDP LT R        H P+R +L    +L    ++   +   
Sbjct: 184 LRAGCDVVLVGAETAVVDDPRLTARGPDDAPLAHQPLRAVLGER-ELPPTLRLFDGS--- 239

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
                                  +     RD +  L  L   G   + +EGG  VA +F+
Sbjct: 240 ---------------------AEVAQLRTRDPRAALAELFELGRRHVFLEGGPTVAAAFL 278

Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327
            + LVD I+ Y + +++G G   +
Sbjct: 279 RAGLVDEIVAYVAPVLLGAGRAAA 302


>gi|257067228|ref|YP_003153483.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Brachybacterium faecium DSM 4810]
 gi|256558046|gb|ACU83893.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Brachybacterium faecium DSM 4810]
          Length = 355

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 99/329 (30%), Positives = 144/329 (43%), Gaps = 37/329 (11%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA 63
             + R ++ AL  +         NP V C+++  DG ++  G     G  HAE  AL  A
Sbjct: 4   DTERRALARALEIAADPSVPLGPNPRVGCVLLGADGAMLAEGHHRGAGTAHAEADALARA 63

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G    GATA VTLEPC+H GR+ PCA+ ++E GI RVV+   DP+  V+  G+  L 
Sbjct: 64  RSLGIPLTGATAVVTLEPCAHTGRTGPCAEALLEAGIGRVVIARTDPNP-VASGGIDRLR 122

Query: 121 QKGIIVD----RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
             GI V+      + +        +       R  +T K A++ D     A   S  ITG
Sbjct: 123 AAGIDVELDVPEALAAAAAALNRGWEHGLRHSRPLVTAKTALTLDGRAAAADGTSQWITG 182

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDS 234
             ++ +VHLLR   D +LVG GT   D P LT R     L    P+R ++          
Sbjct: 183 PAAREEVHLLRTTCDTVLVGTGTARIDQPTLTARRPDGALHPRQPLRAVM---------- 232

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
                    P +   E     + LA             RD    L  L  RG   +L+EG
Sbjct: 233 ----GTSAVPTLPAVEGAGQQVRLA------------TRDPSAALAELFARGARHVLLEG 276

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           G  +  +F+ + LVD +IL+ +  ++G G
Sbjct: 277 GPTLTAAFLRAGLVDELILHLAPTLLGAG 305


>gi|308177749|ref|YP_003917155.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Arthrobacter arilaitensis Re117]
 gi|307745212|emb|CBT76184.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Arthrobacter arilaitensis Re117]
          Length = 346

 Score =  229 bits (584), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 109/361 (30%), Positives = 154/361 (42%), Gaps = 46/361 (12%)

Query: 12  SAALRFSRWHVGLTSTNPSVA-CLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE----E 66
             AL  +    G    NP V  C++  +G +I  G     G PHAEV AL   G+    +
Sbjct: 12  RTALETA--GRGYRGANPLVGACVLDAEGNIIATGFHLGAGHPHAEVDALRRLGKMSPAK 69

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           AR  T  VTLEPC+H GR+ PCA+ I E GI +V   V  PD   +  G  +L  +GI  
Sbjct: 70  ARELTMVVTLEPCNHTGRTGPCARAIAEAGIGQVHYAV--PDNTAASGGADYLRSQGIQA 127

Query: 127 DRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
            ++  S+        +   + E R  IT+KIA S D  I      S  IT   S+N  H 
Sbjct: 128 TQLECSDAARNLNQRWFIAKAEGRPFITVKIAQSLDGRINAPDGTSKWITSEASRNHAHG 187

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           LR++ DAI+VG  T + DDP LT R     L E  P R+++    +L  D  +++     
Sbjct: 188 LRSRVDAIMVGTNTAVIDDPRLTARTPTGELHERQPFRLVMGER-ELPNDLALMQGDDWE 246

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
            ++                          RD+ + +      G   LLVEGGA VA +FI
Sbjct: 247 QIL-------------------------TRDVHEAIVRANELGFGHLLVEGGATVASAFI 281

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD--------YFGSDVCLEYI 355
            + L D I  Y++ ++IG G     +            R D          G D+ L   
Sbjct: 282 AADLADEIYCYQAPLMIGAGSSSVNMPSTSTLSEARRFRLDSASRESLTRLGDDIALHLE 341

Query: 356 G 356
            
Sbjct: 342 P 342


>gi|87200870|ref|YP_498127.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87136551|gb|ABD27293.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 323

 Score =  229 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 126/358 (35%), Positives = 175/358 (48%), Gaps = 44/358 (12%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           ++ D R++ AA         L+  NP+V  +IV DG+V+GRG T  GG PHAE  AL  A
Sbjct: 3   AADDLRWLDAAASLGARGRPLSRPNPAVGAVIVNDGVVVGRGWTQAGGRPHAEAGALMAA 62

Query: 64  GEEARGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           G+ A+GAT YVTLEPC+H   R P C   +++ G+ RVV+ ++DPD R +G G+  L   
Sbjct: 63  GDAAQGATLYVTLEPCAHASERGPSCTSLVLKSGLARVVIGIEDPDPRTAGGGIAALRSA 122

Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           GI  D +  +  +  L  YL R    R H+TLK+A S D  I +A   S  ITG  ++  
Sbjct: 123 GIAADVVPSAAARASLVGYLVRTATGRPHVTLKLATSLDGRIALADGTSKWITGPEARAH 182

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            H+ RA++DAILVG GT+ AD P L  RL GL+  SP R++L     ++ D         
Sbjct: 183 CHVERARADAILVGGGTLRADAPRLDVRLPGLEARSPKRMVLTRG--IAPDGW------- 233

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
                 T   D     AF                             L VEGGA  A +F
Sbjct: 234 ------TGVADIAATGAFGDA------------------------QYLFVEGGAGAAAAF 263

Query: 303 INSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
           + + +VD +++YR+ +VIG+G    G       G     +  V R   GSD    Y  
Sbjct: 264 LAADMVDRLLIYRAPVVIGQGLPCIGDIGLGSLGEAHGRWRNVDRRTLGSDNLDVYER 321


>gi|3378525|emb|CAA08869.1| riboflavin-specific deaminase [Thermotoga neapolitana]
          Length = 241

 Score =  229 bits (583), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 93/241 (38%), Positives = 130/241 (53%), Gaps = 10/241 (4%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCPHAEVQALEEA--- 63
            RFM  A+  ++  +G  + NP V  ++VK+G +I  G        PHAE  A+E A   
Sbjct: 3   ERFMKRAIELAKKGLGRVNPNPPVGAVVVKEGRIISEGFHPLFLVGPHAERVAIESAKRK 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE+  G T  VTLEPC H+G++PPC   IIE GI++VV+ + DP+  VSG G++ L + G
Sbjct: 63  GEDLTGTTLVVTLEPCDHHGKTPPCTDLIIESGIKKVVIGMRDPNP-VSGSGVEKLKKHG 121

Query: 124 IIVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I V   +  E    L   ++T   E R  I LK A + D  I  A   S  IT  + +++
Sbjct: 122 IEVVEGVLEEEVKKLCEFFITYVTENRPFIALKYASTLDGKIADAEGNSKWITQDL-RHK 180

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS-KIIKTAL 241
            H +R    A+LVG  TVL DDP LTCRL G    +P R+ILD    LS  S ++ +   
Sbjct: 181 AHEMRNVYSAVLVGARTVLKDDPRLTCRLKG--GRNPTRVILDRRGILSGGSYRVFEDNA 238

Query: 242 L 242
            
Sbjct: 239 R 239


>gi|21618159|gb|AAM67209.1| probable riboflavin biosynthesis related protein [Arabidopsis
           thaliana]
          Length = 426

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 94/363 (25%), Positives = 163/363 (44%), Gaps = 27/363 (7%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D+ +M   +  ++  +G TS NP V C+IVKDG ++G+G     G PHAEV AL +AGE
Sbjct: 73  DDSFYMRKCVELAKRAIGCTSPNPMVGCVIVKDGDIVGQGFHPKAGQPHAEVFALRDAGE 132

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            A  ATAYV+LEPC+HYGR+PPC + +I+  +RRVV+ + DP+  V   G+  L   GI 
Sbjct: 133 LAENATAYVSLEPCNHYGRTPPCTEALIKAKVRRVVIGMVDPNPIVFSSGISRLKDAGID 192

Query: 126 VDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQD-NMIGMAGCGSVPITGFISKNQV 183
           V   +E E  K     ++ R +  +  + L+ ++S +  ++   G G+    G+ SK   
Sbjct: 193 VTVSVEEELCKKMNEGFIHRMLTGKPFLALRYSMSVNGCLLDKIGQGASDSGGYYSK--- 249

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII----KT 239
             L  + DAI++           ++ +        P++II+  + +    S I+      
Sbjct: 250 --LLQEYDAIILSSSLSDELS-SISSQEAINVSIQPIQIIVASNAQ---QSHILASSHTV 303

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL-------- 291
               P ++V    + V         +  +  +  +L  +L     RG+ S+L        
Sbjct: 304 EESGPKVVVFTAKESVAESGISSSGVETVVLEKINLDSILDYCYNRGLCSVLLDLRGNVK 363

Query: 292 -VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
            +E    +       +L+  +I+        +        +    K+   ++    G  V
Sbjct: 364 DLE---VLLRDGFEQKLLQKVIIEVLPEWSTKDERQIASMKWLESKHVKDLQSKQLGGSV 420

Query: 351 CLE 353
            LE
Sbjct: 421 LLE 423


>gi|18415600|ref|NP_567618.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
           thaliana]
 gi|26452452|dbj|BAC43311.1| unknown protein [Arabidopsis thaliana]
 gi|29824151|gb|AAP04036.1| unknown protein [Arabidopsis thaliana]
 gi|332658979|gb|AEE84379.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Arabidopsis thaliana]
          Length = 426

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 94/363 (25%), Positives = 163/363 (44%), Gaps = 27/363 (7%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D+ +M   +  ++  +G TS NP V C+IVKDG ++G+G     G PHAEV AL +AGE
Sbjct: 73  DDSFYMRKCVELAKRAIGCTSPNPMVGCVIVKDGDIVGQGFHPKAGQPHAEVFALRDAGE 132

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            A  ATAYV+LEPC+HYGR+PPC + +I+  +RRVV+ + DP+  V   G+  L   GI 
Sbjct: 133 LAENATAYVSLEPCNHYGRTPPCTEALIKAKVRRVVIGMVDPNPIVFSSGISRLKDAGID 192

Query: 126 VDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQD-NMIGMAGCGSVPITGFISKNQV 183
           V   +E E  K     ++ R +  +  + L+ ++S +  ++   G G+    G+ SK   
Sbjct: 193 VTVSVEEELCKKMNEGFIHRMLTGKPFLALRYSMSVNGCLLDKIGQGASDSGGYYSK--- 249

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII----KT 239
             L  + DAI++           ++ +        P++II+  + +    S I+      
Sbjct: 250 --LLQEYDAIILSSSLSDELS-SISSQEAINVSIQPIQIIVASNAQ---QSHILASSHTV 303

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL-------- 291
               P ++V    + V         +  +  +  +L  +L     RG+ S+L        
Sbjct: 304 EESGPKVVVFTAKESVAESGISSSGVETVVLEKINLDSILDYCYNRGLCSVLLDLRGNVK 363

Query: 292 -VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
            +E    +       +L+  +I+        +        +    K+   ++    G  V
Sbjct: 364 DLE---VLLRDGFEQKLLQKVIIEVLPEWSTKDERQIASMKWLESKHVKDLQSKQLGGSV 420

Query: 351 CLE 353
            LE
Sbjct: 421 LLE 423


>gi|28572847|ref|NP_789627.1| riboflavin biosynthesis protein RibD [Tropheryma whipplei TW08/27]
 gi|28410980|emb|CAD67365.1| riboflavin biosynthesis protein RibD [Tropheryma whipplei TW08/27]
          Length = 371

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 98/358 (27%), Positives = 155/358 (43%), Gaps = 25/358 (6%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE-EAR 68
           M  A+  ++    +   NP V C+I+ +D  +I +G     G  HAE+ AL  A    + 
Sbjct: 16  MHRAITIAQHG-PVFDRNPQVGCVILDRDYQLISQGWHMGSGSEHAEIMALRGAKSILSE 74

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
              A +TLEPCS  G++ PC + +++ G++ VV  V DP+      G + LS+ G+ I  
Sbjct: 75  PYAAVITLEPCSSAGQTGPCVRALLDAGVKHVVFGVHDPE----SSGAKVLSEAGVKITY 130

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
            ++E E       ++  +V K   +  K A   D  +      S  ITG  ++   H++R
Sbjct: 131 GVLEREVWGLCAKHILPKVRKTPWVIAKRAQGLDGRMSAPDGSSKWITGPYARGHAHVIR 190

Query: 188 AQSDAILVGIGTVLADDPELTC--RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +Q DAI +G  T+  D+P L        L    P  +I     + S       TA     
Sbjct: 191 SQVDAIAIGSNTLCCDNPSLRAFHPAGHLYAKQPKVVIFSGRPRRS------NTAGRGS- 243

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
               E    V    F  ++  I+    +DLKK +  L   GV SLL+EGG  +  SF+  
Sbjct: 244 ---CELGRCVRGHEFFARDPTILS--GKDLKKDMRRLYELGVRSLLLEGGPTLLSSFVRE 298

Query: 306 RLVDSIILYRSQIVIGE--GGIPSPLEEGYLEKNFMCVRRDYFGS-DVCLEYIGKNLC 360
            LVD   +Y +  ++G   G I   +E       F       FG  ++ +  I    C
Sbjct: 299 DLVDEFYIYTAPKLLGGGYGDINIGVESISDSFAFQLNSVTRFGDNNLLIRAIKPIQC 356


>gi|167565784|ref|ZP_02358700.1| riboflavin biosynthesis protein RibD [Burkholderia oklahomensis
           EO147]
          Length = 357

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 103/325 (31%), Positives = 148/325 (45%), Gaps = 21/325 (6%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ ALR +   +  T  NP V C+I  D  V+G G     G PHAEV AL EAGE ARGA
Sbjct: 1   MAHALRLAEQGLYTTRPNPRVGCVIAHDEQVLGTGWHRRAGEPHAEVHALREAGERARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129
           TAYVTLEPC+HYGR+PPCA  ++  G+ RVV+   DP  +V+GRG   L+  GI+V+  +
Sbjct: 61  TAYVTLEPCAHYGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADAGIVVEQGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           ME+E +     + +R    R     K+ +S D  +       +  T   S++ V   RA+
Sbjct: 121 MEAEARELNIGFFSRIERGRPWTRAKLILSIDGPLDGIDRTVLDATESESRDDVRHWRAR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           S  +L   G      P    R        P  ++    F  +LD+    T  + P + + 
Sbjct: 181 SSVVLAPHGV-----PFPAARNGAA----PGYVVRSRDFA-ALDASPATTEGV-PTLALH 229

Query: 250 ENDDPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
             D  V A     +          D      L   L  L  +GV  L ++   A+  +  
Sbjct: 230 REDAGVAAGYATARADAPAAGTSADAGADLRLPDALARLAAQGVNELFIDADLALCDALF 289

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSP 328
              L D ++LY         G+P P
Sbjct: 290 EGDLADELLLYVHPS---RCGVPVP 311


>gi|300741401|ref|ZP_07071422.1| riboflavin biosynthesis protein RibD [Rothia dentocariosa M567]
 gi|300380586|gb|EFJ77148.1| riboflavin biosynthesis protein RibD [Rothia dentocariosa M567]
          Length = 374

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 99/360 (27%), Positives = 155/360 (43%), Gaps = 32/360 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA-- 63
           D R MS A+  +R   G+   NP V  +I    G V+  G     G PHAE  AL +A  
Sbjct: 3   DDRAMSLAIEAAR--QGIRGANPLVGAVITNSAGQVLHIGWHRGAGTPHAEADALAQARA 60

Query: 64  -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
            G +   A  YV+LEPC+H G++ PC+  I E GI +V     D     +  G ++L   
Sbjct: 61  AGTDMSDAKMYVSLEPCNHTGKTGPCSHAIKEAGISQVFYAYPDRSA-QASGGAEYLRSH 119

Query: 123 GIIVDRMME--SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           GI+   M E   +       +     EKR  IT+K A + D  I  A   S  ITG  ++
Sbjct: 120 GIVTTYMREFADDSYALNERWFISVAEKRPFITVKSASTLDGFIAAADGTSKWITGSQAR 179

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIK 238
              HL+R ++DA+++G  T L D+P L  R       +  P+R+++     +    K+  
Sbjct: 180 ADGHLIRKRADAVMIGTRTTLLDNPSLDARDISGQRYKKQPLRVVM-GETDIPSTYKVCG 238

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
                P                     N +     + + LL  L  RGV  L++EGG  +
Sbjct: 239 LGTRDP--------------------ENYMQVYTHEPRVLLDELYSRGVRHLMIEGGPGM 278

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
              F    L+D ++ YR+ I++G G            +N   ++ D  G    +  +G++
Sbjct: 279 VGLFTGEDLLDELVWYRAPILMGHGKSAMYRLITNTLENAPRLQLDDLGMLPAVRVLGED 338


>gi|295395079|ref|ZP_06805288.1| riboflavin biosynthesis protein RibD [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294972027|gb|EFG47893.1| riboflavin biosynthesis protein RibD [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 336

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 109/360 (30%), Positives = 154/360 (42%), Gaps = 47/360 (13%)

Query: 12  SAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR-GA 70
            AAL  +    G+   NP V   ++ D      G     G PHAE  A+  A   +  GA
Sbjct: 9   RAALGAA--TRGVRGANPLVGAAVLWDDGTFTTGYHQGAGTPHAEPDAIRNASPRSTTGA 66

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV---- 126
           T  VTLEPCSH GR+ PC Q II+ GI RVV+   DP+   +  G Q L++ G+ V    
Sbjct: 67  TLVVTLEPCSHTGRTGPCTQAIIDAGITRVVIASRDPNP-QASGGAQTLTEAGVEVLFLN 125

Query: 127 ------DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
                    + ++       + T     R  IT KIA S D  +      S  ITG  S+
Sbjct: 126 DLGQSWAHEVATQAHRLNARWFTAVTHDRPFITAKIAQSLDGCVAARDRTSQWITGAESR 185

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              HL RA+ DAI VG GT  AD+P LT R  G   H P+ ++      L  DS +    
Sbjct: 186 AHAHLTRARVDAIAVGTGTAHADNPRLTAR-TGDSPHQPIPVVFGTTA-LPGDSHL---G 240

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
                +  +E                            L  L  RGV+ LL+EGG  +  
Sbjct: 241 RNPRTLTYSEVGAG------------------------LRDLRRRGVSHLLLEGGPTLMA 276

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV---RRDYFGSDVCLEYIGK 357
            F+   LVD + +Y + +++G+ GI +PL    L +    V     +  GSD    ++ +
Sbjct: 277 HFLQHDLVDELHVYTAPLLLGD-GIRAPLSVDTLAQGLRFVPDAPPEALGSDTFTRFMKE 335


>gi|325860399|ref|ZP_08173511.1| riboflavin biosynthesis protein RibD [Prevotella denticola CRIS
           18C-A]
 gi|325482057|gb|EGC85078.1| riboflavin biosynthesis protein RibD [Prevotella denticola CRIS
           18C-A]
          Length = 380

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 98/387 (25%), Positives = 157/387 (40%), Gaps = 37/387 (9%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
           M     D  +M   L+ +R    L   NP V  +IV KDG +IG G     G  H+EV A
Sbjct: 1   MKQEETDEIYMRRCLQLARNGQQLAKPNPMVGAVIVSKDGRIIGEGYHVRCGEGHSEVNA 60

Query: 60  LEEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
                +E       AT YV+LEPCSHYG++PPCA  II  G+RRVV    DP  +V GRG
Sbjct: 61  FASVRKEDEALLHEATVYVSLEPCSHYGKTPPCADLIISKGVRRVVCGCIDPFSKVQGRG 120

Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ---------DNMIG 165
           ++ L + GI +   ++E E       ++T     R ++ LK A ++              
Sbjct: 121 VKRLREAGIDVTVGVLEKECLELNKRFITYNTHHRPYVILKWAQTKRVTTNILFNTPTNT 180

Query: 166 MAGCGSVPITGFISKNQVHLLRAQSD--AILVGIGTVLADDPELTC-----RLNGLQEHS 218
           ++   + P    +   +    R   D  +I+ G    +    + T       L G   H 
Sbjct: 181 LSNTPASPSPSPLPHREGSKHRDSPDDLSIINGSQDEITAREKKTSAAYIGNLPGKDYHP 240

Query: 219 -----PMRIILDPHFKLSLDSKII---KTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270
                P   +L    +   D+ ++      L  P + V E   P         +      
Sbjct: 241 LIISTPFTKMLVHKLRAENDAILVGKTTEELEHPQLTVREWSGPNPEKLVLTSHPT-REG 299

Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           +     + L+ L      SL+VEGGA    SF+++ L D I +  +   + + GI +P  
Sbjct: 300 EYATPAEALSHLYEEKKQSLVVEGGAKTLQSFLDAGLWDEIRIETAPFTV-DKGIEAP-- 356

Query: 331 EGYLEKNFMCVRRDYFGSDVCLEYIGK 357
              L +     + + +  +  + Y  +
Sbjct: 357 --KLPEKLRITKVEKY-VNTIVTYERE 380


>gi|5262786|emb|CAB45891.1| putative protein [Arabidopsis thaliana]
 gi|7268893|emb|CAB79096.1| putative protein [Arabidopsis thaliana]
 gi|45268463|gb|AAS55854.1| pyrimidine deaminase [synthetic construct]
          Length = 363

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 94/363 (25%), Positives = 163/363 (44%), Gaps = 27/363 (7%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D+ +M   +  ++  +G TS NP V C+IVKDG ++G+G     G PHAEV AL +AGE
Sbjct: 10  DDSFYMRKCVELAKRAIGCTSPNPMVGCVIVKDGDIVGQGFHPKAGQPHAEVFALRDAGE 69

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            A  ATAYV+LEPC+HYGR+PPC + +I+  +RRVV+ + DP+  V   G+  L   GI 
Sbjct: 70  LAENATAYVSLEPCNHYGRTPPCTEALIKAKVRRVVIGMVDPNPIVFSSGISRLKDAGID 129

Query: 126 VDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQD-NMIGMAGCGSVPITGFISKNQV 183
           V   +E E  K     ++ R +  +  + L+ ++S +  ++   G G+    G+ SK   
Sbjct: 130 VTVSVEEELCKKMNEGFIHRMLTGKPFLALRYSMSVNGCLLDKIGQGASDSGGYYSK--- 186

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII----KT 239
             L  + DAI++           ++ +        P++II+  + +    S I+      
Sbjct: 187 --LLQEYDAIILSSSLSDELS-SISSQEAINVSIQPIQIIVASNAQ---QSHILASSHTV 240

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL-------- 291
               P ++V    + V         +  +  +  +L  +L     RG+ S+L        
Sbjct: 241 EESGPKVVVFTAKESVAESGISSSGVETVVLEKINLDSILDYCYNRGLCSVLLDLRGNVK 300

Query: 292 -VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
            +E    +       +L+  +I+        +        +    K+   ++    G  V
Sbjct: 301 DLE---VLLRDGFEQKLLQKVIIEVLPEWSTKDERQIASMKWLESKHVKDLQSKQLGGSV 357

Query: 351 CLE 353
            LE
Sbjct: 358 LLE 360


>gi|119961067|ref|YP_947578.1| riboflavin biosynthesis protein RibD [Arthrobacter aurescens TC1]
 gi|119947926|gb|ABM06837.1| riboflavin biosynthesis protein RibD [Arthrobacter aurescens TC1]
          Length = 373

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 107/329 (32%), Positives = 155/329 (47%), Gaps = 35/329 (10%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQAL 60
             ++ ++  M AAL  +    G    NP V  +I+  DG  +  G     G  HAE  A+
Sbjct: 7   SYTAAESEAMDAALTAAL--AGPRGANPLVGAVILSPDGEQLATGYHRGAGTAHAEADAI 64

Query: 61  EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            EA   G +  G T  VTLEPC+H GR+ PCAQ II  GI +V+  VDDP    +G G +
Sbjct: 65  SEARKKGIDIVGTTMVVTLEPCNHVGRTGPCAQAIIAAGIAKVIYAVDDPHDPAAG-GAR 123

Query: 118 WLSQKGIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
            LS  G+ V   +E E  +     +      KR  +TL IA + D+ I      S  I+ 
Sbjct: 124 TLSAAGVEVISGLEGEKALDLNRDWFDAVAAKRPFVTLHIAQTLDSRIAAVDGTSQWISC 183

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDS 234
             S    H LR   DAILVG GTVL DDP LT R     L  H P+R ++     +  D+
Sbjct: 184 PESLADNHGLRGLIDAILVGTGTVLVDDPRLTARTPDGELSAHQPIRAVMGLR-DVPQDA 242

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
            +                        R  +   ++   RD  + L +L  +GV  L+VEG
Sbjct: 243 AV------------------------RGNDGRFVHLPTRDPAEALGMLFEKGVRHLMVEG 278

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           G+++  +F+ + LVD +I+Y +  ++G G
Sbjct: 279 GSSILSTFLAADLVDELIVYLAPTLLGSG 307


>gi|327312630|ref|YP_004328067.1| riboflavin biosynthesis protein RibD [Prevotella denticola F0289]
 gi|326946400|gb|AEA22285.1| riboflavin biosynthesis protein RibD [Prevotella denticola F0289]
          Length = 380

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 97/358 (27%), Positives = 147/358 (41%), Gaps = 32/358 (8%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
           M     D  +M   L+ +R    L   NP V  +IV KDG +IG G     G  HAEV A
Sbjct: 1   MKQEKTDEIYMRRCLQLARNGQQLAKPNPMVGAVIVSKDGRIIGEGYHVRCGEGHAEVNA 60

Query: 60  LEEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
                +E       AT YV+LEPCSHYG++PPCA  II  G+RRVV    DP  +V GRG
Sbjct: 61  FASVRKEDEALLHEATVYVSLEPCSHYGKTPPCADLIISKGVRRVVCGCIDPFSKVQGRG 120

Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ---------DNMIG 165
           ++ L + GI +   ++E E       ++T     R ++ LK A ++              
Sbjct: 121 VKRLREAGIDVTVGVLEKECLELNKRFITYNTHHRPYVILKWAQTKRVTTNTLSNTPTNT 180

Query: 166 MAGCGSVPITGFISKNQVHLLRAQSD--AILVGIGTVLADDPELTC-----RLNGLQEHS 218
           ++   + P    +   +    R  +D  +I+ G    +    + T       L G   H 
Sbjct: 181 LSNTPASPSPSPLPHREGSEHRDSTDDLSIINGSQDEITAREKKTSVAYIGNLPGKDYHP 240

Query: 219 -----PMRIILDPHFKLSLDSKII---KTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270
                P   +L    +   D+ ++      L  P + V E   P         +      
Sbjct: 241 LIISTPFTKMLVHKLRAENDAILVGKTTEELEHPQLTVREWSGPNPEKLVLTSHPT-REG 299

Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
           +     + L  L      SL+VEGG     SF+++ L D I +  +   +G  GI +P
Sbjct: 300 EYATPAEALAHLYEEKKQSLVVEGGVKTLQSFLDAGLWDEIRIETAPFTVG-KGIEAP 356


>gi|227503568|ref|ZP_03933617.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Corynebacterium accolens ATCC 49725]
 gi|227075604|gb|EEI13567.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Corynebacterium accolens ATCC 49725]
          Length = 344

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 115/354 (32%), Positives = 163/354 (46%), Gaps = 31/354 (8%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGAT 71
            A++      G TS NP V  +I+   G V+G G T   G  HAEV AL  AGE+ARG T
Sbjct: 16  QAMQAGAAVRGTTSPNPPVGAVILSATGAVVGIGATQPVGGAHAEVMALRAAGEKARGGT 75

Query: 72  AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
           A VTLEPC+H GR+ PCA  +I+ GI RV     DP  +  G      +    +      
Sbjct: 76  AVVTLEPCAHTGRTGPCATALIDAGIARVFYLHPDPTPQAGGGAQALAAAGVEVGRLTAP 135

Query: 132 SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191
              +  + A+L     +R H+TLK A + D     A   S  ITG  ++  VH  RA+ D
Sbjct: 136 DGVEDAVRAWLRAVKLQRPHVTLKFAQTLDGFTAAADGTSQWITGPKAREWVHADRARRD 195

Query: 192 AILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           AI++G GT LAD+P LT R     L+EH P R+++    K  L +               
Sbjct: 196 AIIIGTGTALADNPSLTARFSDGSLREHQPRRVVI---GKRDLQA-------------AG 239

Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
           E    +  L F + +          ++  L  L   G   +LVEGGA +A  FI +   D
Sbjct: 240 EKASHLQQLGFEQYD---------TIEGALKELYASGARDVLVEGGAGLAQGFIEAGAAD 290

Query: 310 SIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
           ++  Y + I++G+G      +         +F  VR    G DV +EY  +N  
Sbjct: 291 ALAAYIAPILLGQGRGVLANAVAHTLADAPHFTTVRTTSLGPDVLIEYEARNER 344


>gi|167572878|ref|ZP_02365752.1| riboflavin biosynthesis protein RibD [Burkholderia oklahomensis
           C6786]
          Length = 357

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 102/325 (31%), Positives = 147/325 (45%), Gaps = 21/325 (6%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ ALR +   +  T  NP V C+I     V+G G     G PHAEV AL EAGE ARGA
Sbjct: 1   MAHALRLAEQGLYTTRPNPRVGCVIAHGEQVLGTGWHRRAGEPHAEVHALREAGERARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129
           TAYVTLEPC+HYGR+PPCA  ++  G+ RVV+   DP  +V+GRG   L+  GI+V+  +
Sbjct: 61  TAYVTLEPCAHYGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADAGIVVEQGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           ME+E +     + +R    R     K+ +S D  +       +  T   S++ V   RA+
Sbjct: 121 MEAEARELNIGFFSRIERGRPWTRAKLILSIDGPLDGIDRTVLDATESESRDDVRHWRAR 180

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           S  +L   G      P    R        P  ++    F  +LD+    T  + P + + 
Sbjct: 181 SSVVLAPHGV-----PFPAARNGAA----PGYVVRSRDFA-ALDASPATTEGV-PTLALH 229

Query: 250 ENDDPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
             D  V A     +          D      L   L  L  +GV  L ++   A+  +  
Sbjct: 230 REDAGVAAGYATARADAPAAGTSADAGADLRLPDALARLAAQGVNELFIDADLALCDALF 289

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSP 328
              L D ++LY         G+P P
Sbjct: 290 EGNLADELLLYVHPS---RCGVPVP 311


>gi|306836172|ref|ZP_07469157.1| riboflavin biosynthesis protein RibD [Corynebacterium accolens ATCC
           49726]
 gi|304567955|gb|EFM43535.1| riboflavin biosynthesis protein RibD [Corynebacterium accolens ATCC
           49726]
          Length = 307

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 108/327 (33%), Positives = 152/327 (46%), Gaps = 30/327 (9%)

Query: 39  GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
           G V+G G T   G  HAEV AL  AGE+ARG TA VTLEPC+H GR+ PCA  +I+ GI 
Sbjct: 6   GAVVGIGATQPVGGAHAEVMALRAAGEKARGGTAVVTLEPCAHTGRTGPCATALIDAGIA 65

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAV 158
           RV     D   +  G      +    +         +  + A+L     +R H+TLK A 
Sbjct: 66  RVFYLHPDSTPQAGGGAQALAAAGVEVGRLTAPDGVEDAVRAWLRAVKLQRPHVTLKFAQ 125

Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQE 216
           + D     A   S  ITG  ++  VH  RA+ DAI++G GT LAD+P LT R     L+E
Sbjct: 126 TLDGFTAAADGTSQWITGPKAREWVHADRARRDAIIIGTGTALADNPSLTARFSDGSLRE 185

Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276
           H P R+++    K  L +               E    +  L F + +          ++
Sbjct: 186 HQPRRVVI---GKRDLQA-------------AGEKASHLQRLGFEQYD---------TIE 220

Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGY 333
             L  L   G   +LVEGGA +A SFI +  VD++  Y + I++G+G      +      
Sbjct: 221 GALKELYASGARDVLVEGGAGLAQSFIEAGAVDTLAAYIAPILLGQGRGVLANAVAHTLA 280

Query: 334 LEKNFMCVRRDYFGSDVCLEYIGKNLC 360
              +F  VR    G DV +EY  +N  
Sbjct: 281 DAPHFTTVRTTSLGPDVLIEYEARNER 307


>gi|218680684|ref|ZP_03528581.1| 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidinedea
           [Rhizobium etli CIAT 894]
          Length = 307

 Score =  225 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 129/223 (57%), Positives = 164/223 (73%), Gaps = 1/223 (0%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQ 90
           V CLIVKD +V+G+ VTA GG PHAE QAL EAGE ARGATAYVTLEPCSH+G++PPCA+
Sbjct: 1   VGCLIVKDSVVVGQAVTAVGGRPHAEPQALAEAGEAARGATAYVTLEPCSHHGKTPPCAE 60

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKR 149
            +I  G+ RVV+ V DPD RVSGRG+  L + GI VD  ++E+EG+  L AYLTRQ + R
Sbjct: 61  ALIAYGVARVVISVTDPDPRVSGRGIAMLREAGIEVDAGVLEAEGRRSLAAYLTRQTKNR 120

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++TLK+AVS D MIG  G G V ITG  ++ +V  LRA++DAILVGIGT ++DDP LT 
Sbjct: 121 PYVTLKLAVSADGMIGREGEGQVAITGPEARAEVQALRAETDAILVGIGTAISDDPLLTV 180

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252
           R  GL+  SP+RI+LDP   L L S+++ TA   PVI+V   +
Sbjct: 181 RTPGLEAQSPIRIVLDPSLALPLTSRLVATAREVPVILVASEE 223


>gi|302345996|ref|YP_003814349.1| riboflavin biosynthesis protein RibD [Prevotella melaninogenica
           ATCC 25845]
 gi|302150238|gb|ADK96500.1| riboflavin biosynthesis protein RibD [Prevotella melaninogenica
           ATCC 25845]
          Length = 372

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 102/373 (27%), Positives = 160/373 (42%), Gaps = 38/373 (10%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
           M     D ++M   L+ +R    L   NP V  +IV K+G +IG G     G  HAEV A
Sbjct: 1   MKQEKTDEKYMRRCLQLARNGQQLAKPNPMVGAVIVSKEGRIIGEGYHVRCGKGHAEVNA 60

Query: 60  LEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
                +E     R AT YV+LEPCSHYG++PPCA  II  G+RRVV    DP   V GRG
Sbjct: 61  FASVRKEDEALLREATVYVSLEPCSHYGKTPPCADLIISKGVRRVVCGCIDPFAEVQGRG 120

Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA-GCGSVP 173
           ++ + + GI +   ++E E       ++T    KR ++ LK A ++  +        + P
Sbjct: 121 VKKIREAGIEVTVGVLEKECLELNKRFITYNTHKRPYVILKWAETESRLTNTPFNTPASP 180

Query: 174 ITGFISKNQVHLLRAQ-SDA-ILVGIGTVLADDPELTCRLNGL---------QEHSPMRI 222
               +   +    R   +DA I+ G      DD   TC  N           +++ P+ I
Sbjct: 181 SPLPLPHREGSNHRDTPNDASIINGSK----DDVT-TCTNNSAVAYIGNLPDKDYQPLII 235

Query: 223 ------ILDPHFKLSLDSKII---KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR 273
                 +L    +   D+ ++      L  P + V E   P                +  
Sbjct: 236 STPFTKMLVHKMRAENDAILVGKTTEELEQPQLTVREWSGPSPEKLVLTSQPT-KAGEYA 294

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
              ++L+ L      SL+VEGGA    SF+++ L D I +  +   + EG     +E   
Sbjct: 295 TPAEVLSHLYAEKKQSLIVEGGAKTLQSFLDAGLWDEIRIESAPFTVNEG-----IEAPK 349

Query: 334 LEKNFMCVRRDYF 346
           L +N   ++ + +
Sbjct: 350 LPENIRVIKVEKY 362


>gi|297182203|gb|ADI18374.1| pyrimidine deaminase [uncultured actinobacterium HF4000_04C13]
          Length = 338

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 118/342 (34%), Positives = 161/342 (47%), Gaps = 40/342 (11%)

Query: 24  LTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYG 83
            TS NP V  ++V DG ++G G T   G  HAE  AL EAG  A GAT Y TLEPC H G
Sbjct: 26  RTSPNPRVGAVVVVDGRMVGSGATQPPGGAHAERVALAEAGPAAAGATLYTTLEPCDHEG 85

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYL 142
           R+ PC   II  G+ RVVV + DPD  VSGRG+  L + G+ +   ++E E    L  YL
Sbjct: 86  RTAPCTDAIIGAGVARVVVGIGDPDPEVSGRGIGRLREAGLDVDVGVLEDEVSDTLAPYL 145

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
             +   R ++ LK+A + D  I      S  ITG  ++  VH LRA  DAI VG GT+ A
Sbjct: 146 HHRRTGRPYVVLKLAATLDGRIAAPDGTSRWITGSEARLDVHRLRASCDAICVGAGTIRA 205

Query: 203 DDPELTCRLNGLQ---EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
           DDP L  R    +      P R++L    ++   ++++                   A  
Sbjct: 206 DDPRLDVRDADGEVEGGDPPRRVVL---GEIPAGARVL------------------PADE 244

Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
           +      ++     D           GV  LLVEGGA VA  F  + LVD  ++Y +  +
Sbjct: 245 YHGGLEGLLDGLGAD-----------GVLKLLVEGGADVAGRFHRAGLVDRYVVYLAPAL 293

Query: 320 IGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           +G      PL  G        +RR  F   V +E +G +L L
Sbjct: 294 LGGEDG-RPLMAGPGAPTMADLRRGRF---VAVEVLGDDLRL 331


>gi|85710330|ref|ZP_01041395.1| riboflavin-specific deaminase/reductase [Erythrobacter sp. NAP1]
 gi|85689040|gb|EAQ29044.1| riboflavin-specific deaminase/reductase [Erythrobacter sp. NAP1]
          Length = 315

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 119/337 (35%), Positives = 154/337 (45%), Gaps = 47/337 (13%)

Query: 27  TNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGEEARGATAYVTLEPCSHYG-R 84
            NP VA L+V+   VI RG T  GG PHAE  AL   A   A+GAT YVTLEPC+H   R
Sbjct: 17  PNPGVAALLVQGNCVIARGWTQGGGRPHAEAIALAGIAEGGAKGATLYVTLEPCAHQSQR 76

Query: 85  SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            P C   +I     RVV+   DPD R +G G + + + GI V  + +   +  L  YLTR
Sbjct: 77  GPACTDLVIAARPSRVVIGQLDPDPRTAGLGAKRIQRAGIAVTVLDDDVARASLAGYLTR 136

Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
               R H+TLK+A+S D  I +A   S  ITG  ++  VH  RAQ DAILVG GT  AD 
Sbjct: 137 AALGRPHVTLKLAMSLDGAIALASGASQWITGEAARAHVHSRRAQHDAILVGGGTWRADK 196

Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
           P L  RL GL+  SP R++L                                        
Sbjct: 197 PRLDVRLPGLEARSPDRVLLTRG--------------------------------VAPDG 224

Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           + +I            I    GV  L VEGGA  A SF+   +VD + +YR+ I+IG  G
Sbjct: 225 VTVINEPA-------QIAALDGVQYLYVEGGAGAAASFLAEDMVDELHIYRAPILIGS-G 276

Query: 325 IPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356
           +P+  + G          +        GSD    Y+ 
Sbjct: 277 LPALSDIGLASLADAHGRWRHCESRQLGSDTFTSYLR 313


>gi|326426566|gb|EGD72136.1| riboflavin biosynthesis protein RibA [Salpingoeca sp. ATCC 50818]
          Length = 1091

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 106/479 (22%), Positives = 172/479 (35%), Gaps = 137/479 (28%)

Query: 4    SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
            ++ D  FM  AL  +R        NP V C++V+DG VIG G     G PHAE++A+ +A
Sbjct: 577  AAVDELFMRRALSLARLGRVSAPPNPWVGCVLVRDGHVIGEGYHRRAGMPHAEIEAMADA 636

Query: 64   GEEA-----------------------------------RGATAYVTLEPCSHYGRSPPC 88
               A                                   RG +     E  S   ++P  
Sbjct: 637  VLRAGIDIMEHGGAAAALADTPFAAFANTAAAQTHRLLQRGKSKRAASEAKSTTAKTPSA 696

Query: 89   AQFIIECGIRRVV--------------------------------------VCVDDPDVR 110
                   G+   V                                      + V DPD R
Sbjct: 697  CTLTTATGVVEAVRAVLAGATAYVTLEPCHHQGRTGPCDQALVQAGVARTVIAVTDPDER 756

Query: 111  VSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC 169
            VS RGL +L  +G+ +   +  +E +  L  YL ++   R    +K A+S D  +     
Sbjct: 757  VSARGLAFLRSRGVEVATGVCGAEAEALLAPYLHQRRTGRPLCVIKTAISIDGRVACKDA 816

Query: 170  GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN----------------G 213
             S  ITG +++ + H +RA+S A+L GIGT LAD+P L  RL                  
Sbjct: 817  TSKWITGPLARARAHKMRAESQAVLCGIGTALADNPTLNVRLALASLPPGERAAFAPAMH 876

Query: 214  LQEHSP----------------MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
                SP                +R++LD   +L  + +++ T++   ++  + +      
Sbjct: 877  AASPSPVTVAGAGAHFGRGMPLVRVVLDARGRL-FEGRLLDTSIAPTIVYTSRDCSAQAL 935

Query: 258  LAFRKKNINIIYCDC--------------------------RDLKKLLTILVGRGVTSLL 291
              +    +  +  D                            DL ++L  L  RGV  +L
Sbjct: 936  KTWAAHGVEAVVVDTACASGYAGACRGVDTRVGGDAAAPVLLDLMQVLRDLAKRGVLQVL 995

Query: 292  VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYF 346
            VEGGA V  SF+   L D + ++    ++G   +P   +E        + +  VR + F
Sbjct: 996  VEGGAQVHSSFVQQGLGDQLAVFVGPKLLGGTAVPWLPDELASTMAHARTYSLVRVETF 1054


>gi|289675578|ref|ZP_06496468.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           syringae FF5]
          Length = 194

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 84/187 (44%), Positives = 114/187 (60%), Gaps = 1/187 (0%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            ++ D  +M+ AL  +R  +  T  NP V C+IV++G ++G G  A  G PHAEV AL +
Sbjct: 5   QAALDVHYMARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQ 64

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH GR+PPCA  +IE G+ RVV  + DP+  VSGRGL  L   
Sbjct: 65  AGELARGATAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNA 124

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++ESE +     +L R      ++ +K+A+S D    MA   S  ITG  +++
Sbjct: 125 GISVQCGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARS 184

Query: 182 QVHLLRA 188
            V  LRA
Sbjct: 185 AVQRLRA 191


>gi|297627300|ref|YP_003689063.1| riboflavin-specific deaminase
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           (5-amino-6-(5-phosphoribosylamino)uracil reductase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296923065|emb|CBL57649.1| Riboflavin-specific deaminase
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase)
           (5-amino-6-(5-phosphoribosylamino)uracil reductase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 406

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 108/364 (29%), Positives = 166/364 (45%), Gaps = 44/364 (12%)

Query: 12  SAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE---AGEEA 67
             A   S         NP V C+++  DG VI  G     G  HAE  AL      G + 
Sbjct: 68  RRAFELSARG-PADDPNPRVGCVLLAPDGGVIAEGWHRGAGTAHAEAAALAAARAVGSDV 126

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
           RGATA V+LEPC+H+GR+ PCA  + + GI RVV  V DP+   +G   Q L ++G+ ++
Sbjct: 127 RGATAVVSLEPCAHWGRTGPCAVALADAGITRVVFSVPDPNPVAAGGT-QVLRERGVEVI 185

Query: 127 DRMMESEGKIFLHAYLTRQVEK-------RSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             + E+ G+  L  +L RQV         R  + +K+A + D  +  A   S  ITG  +
Sbjct: 186 GGVAEASGREALGDWLARQVAPLPGEVGARPQVLVKMAATLDGRVAAADGTSRWITGPAA 245

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKII 237
           ++  H  RA+  AI+VG GT+LADDP LT RL    L +H P+R+++     +  D+ + 
Sbjct: 246 RDHAHGTRARVGAIVVGTGTLLADDPALTARLPDGSLADHQPLRVVMGTRP-VPDDAAV- 303

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                                  R     ++     D  ++L  L  RGV  +L+EGG  
Sbjct: 304 -----------------------RGPGGALLALRTHDPAEVLRELSSRGVREVLIEGGPT 340

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLEY 354
           +A +F+ + L D +  Y S  ++G G        +        F  V     G D+ +  
Sbjct: 341 IASAFLAAGLADELHAYISPALLGAGAQAVSGLGISTITSALRFHIVDVHRLGDDLLVVA 400

Query: 355 IGKN 358
             ++
Sbjct: 401 RPRS 404


>gi|300781124|ref|ZP_07090978.1| riboflavin biosynthesis protein RibD [Corynebacterium genitalium
           ATCC 33030]
 gi|300532831|gb|EFK53892.1| riboflavin biosynthesis protein RibD [Corynebacterium genitalium
           ATCC 33030]
          Length = 361

 Score =  222 bits (565), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 97/342 (28%), Positives = 142/342 (41%), Gaps = 53/342 (15%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLI--------VKD-----GIVIGRGVTA 48
             +  +   +  AL       G TS NP V C+I        V D       +I  G T 
Sbjct: 7   TFTEQEETALWEALDAGAEVRGTTSPNPPVGCVIYREVEPVIVDDWDQAEPEIIATGGTE 66

Query: 49  YGGCPHAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
             G  HAE+ AL+ A E+      RGA   VTLEPC+H GR+ PCA+ I+  GI +VV  
Sbjct: 67  PAGGRHAEIVALDAAREKVGDDGLRGACMLVTLEPCNHTGRTGPCAEAIVAAGIAKVVYI 126

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163
             DP+   +  G ++L + G+ V           L  +LT     R  +T K A + D  
Sbjct: 127 EPDPNPE-ASGGAEYLRRHGVEVHHKTYD--VTGLAPWLTAVRHGRVSVTAKFAATLDGF 183

Query: 164 IGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMR 221
           +      S  ITG I++  VH  R++ DAI++G GT LAD+P LT R     L E  P R
Sbjct: 184 VAAPDGSSQWITGPITREWVHEDRSRVDAIIIGTGTALADNPSLTARKADGSLAERQPRR 243

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
           +++        +   +     A                                ++ L  
Sbjct: 244 VVVGTREVPEGNLTRLGFERYAT------------------------------PQEALDA 273

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           L   G   ++VEGG  +  S     +VD+I  Y + ++ G G
Sbjct: 274 LWETGARHVIVEGGPTLMRSVFELGVVDAIHAYVAPMLFGAG 315


>gi|163841087|ref|YP_001625492.1| riboflavin biosynthesis protein [Renibacterium salmoninarum ATCC
           33209]
 gi|162954563|gb|ABY24078.1| riboflavin biosynthesis protein [Renibacterium salmoninarum ATCC
           33209]
          Length = 369

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 103/363 (28%), Positives = 161/363 (44%), Gaps = 41/363 (11%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA 63
           + D   M  AL  +    G+   NP V  +I+  DG ++  G  A  G PHAE  AL + 
Sbjct: 2   NHDEA-MDLALATAIK--GIRGANPLVGAVILGADGELLAAGHHAGAGTPHAEALALAQL 58

Query: 64  -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
              ++ GAT   TLEPCSH GR+P C+Q II+ GI  VV   DDPD   +G   +  +  
Sbjct: 59  EPSQSAGATLVCTLEPCSHVGRTPACSQAIIDAGITTVVYAADDPDQNAAGGAARLRAAG 118

Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
             ++  +  +EG      +     + R + ++ I  + D  I      S  I+   S   
Sbjct: 119 ITVISDVRAAEGHELNRRWFAAVRDSRPYTSVHIMQTIDGRIAAVDGSSQWISCPESLAA 178

Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTA 240
            H  R ++ A+LVG GT+LAD+P LT R    Q     P+R+ L  + ++  D+ I    
Sbjct: 179 KHARRTRAHAMLVGTGTILADNPRLTARDPDGQLFARQPLRVAL-GNREVPADAAI---- 233

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
                                + +   +     D  K    L  +GV  L+VEGGA V  
Sbjct: 234 ---------------------RGDGRWLQVKDHDALKAGRTLRAQGVDHLIVEGGAQVTA 272

Query: 301 SFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           +F+ + LVD +I+  +  V+G G       G+ +  +  +   +   V   + GSD+ L 
Sbjct: 273 AFLRADLVDELIVSIAPTVLGSGITAIGDIGVLTLADARHFGWDPAAVPIRH-GSDLTLT 331

Query: 354 YIG 356
           +I 
Sbjct: 332 FIP 334


>gi|163784632|ref|ZP_02179466.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880100|gb|EDP73770.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 279

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 85/276 (30%), Positives = 137/276 (49%), Gaps = 12/276 (4%)

Query: 89  AQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVE 147
              IIE  I++VVV   DP+  V+G+G++ L + G+ ++  ++E + K     +     E
Sbjct: 1   TNAIIENKIKKVVVATLDPNPLVAGKGIKLLEEHGVEVITGVLEDKAKKLNEDFFVYIKE 60

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           KR  I LK A + D  I      S  ITG  ++   H LR ++ A+LVG+GTVL D+P+L
Sbjct: 61  KRPFIHLKWAQTIDGKIATFTGSSKWITGEKARKYAHKLRKEASAVLVGVGTVLKDNPQL 120

Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF-RKKNIN 266
           T R +   +  P+R+++D + K  +D KI    +   ++ V +N D        +K+NI 
Sbjct: 121 TVR-HIKTDKQPVRVLIDKNLKTPIDYKIFDETVK-TIVFVGKNADKEKIKNLSKKENIE 178

Query: 267 IIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
           II         +LK +L  L  R +  +LVEGG  +   FI   L D I ++ +  ++GE
Sbjct: 179 IIKLPLDKGKFELKDILNELYKRDIIHILVEGGKEIITQFIKENLFDKISVFIAPKIVGE 238

Query: 323 GGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEY 354
            GI S     +E+          R      DV +E+
Sbjct: 239 EGISSVGKLHIEDINSSIKLNKKRIKSLEEDVLIEF 274


>gi|255071909|ref|XP_002499629.1| predicted protein [Micromonas sp. RCC299]
 gi|226514891|gb|ACO60887.1| predicted protein [Micromonas sp. RCC299]
          Length = 639

 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 87/381 (22%), Positives = 140/381 (36%), Gaps = 36/381 (9%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQAL 60
             +  D   +  A   S    GL   +P   C+++   G V+ R      G   +EV A+
Sbjct: 26  TFTDDDLAHVLCAAELSHGSDGLVQPHPRSGCVLLDSAGAVVARTFQMGQGGVRSEVLAV 85

Query: 61  EEAGEEARGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
            EAG  A G  AY+ LEP              ++   + RVVV +  P   V G+ +  L
Sbjct: 86  REAGARADGGVAYLNLEPAHGPAVGEDAAVDALVRSRVSRVVVGILHPVAGVRGQAVAAL 145

Query: 120 SQKGIIVDRMME---------------------SEGKIFLHAYLTRQVEKRSHITLKIAV 158
              G+ VD + E                     +  +      L R    R     K A+
Sbjct: 146 RDAGVRVDVLGEFTSRFTSAADERAASAVAEGIARCRDANRHLLHRVATGRPFSIFKYAM 205

Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS 218
           + D  I      S  +TG  ++ QV   RA+SDA++VG  TV  D+P LT R +G   H 
Sbjct: 206 TVDGKIATTSGHSAWVTGPAARQQVWAERARSDAVVVGGTTVRRDNPNLTTRRDG--GHR 263

Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
           P RI+     +      +  T     +++             R   + ++  D      +
Sbjct: 264 PARIVRVRKPRT----NLWNTDEANTIVMTVAGARREFQAELRALGVEVVEFDELTPGAV 319

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG--IPSPLEEGYLEK 336
                 RG   L  E G  +A   +   +   ++ + +  ++G  G   PSP+ E  LE+
Sbjct: 320 ADYCAKRGYLQLFWECGGGLAGPALTDGVFHHVMAFVAPKIVGSSGGPAPSPVGETGLER 379

Query: 337 N-----FMCVRRDYFGSDVCL 352
                    +     G DV +
Sbjct: 380 MTDALALRGLGIRKHGRDVLI 400


>gi|145637248|ref|ZP_01792909.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
           PittHH]
 gi|145269500|gb|EDK09442.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
           PittHH]
          Length = 274

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 77/276 (27%), Positives = 129/276 (46%), Gaps = 20/276 (7%)

Query: 98  RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKI 156
            +V+  + DP+ +V+G+GL+ LS  GI     ++  + +     +L R  +    + LK+
Sbjct: 1   MKVIAAMQDPNPQVAGKGLKMLSDAGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKL 60

Query: 157 AVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE 216
           A+S D    MA   S  ITG  +++ V  +RA+S A+L    TV+ADDP L  R +   E
Sbjct: 61  AMSLDGRTAMASGESKWITGPDARSDVQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPE 120

Query: 217 -----------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
                        P+R+ILD   ++    K+  T   +PV +V+     +    F     
Sbjct: 121 NLKTEYKKEDLRQPVRVILDSQHRIQPTHKLFLT--HSPVWLVSSETRDLT--GFPDFCE 176

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
            II      LK+L+  L  R + +L VE GA +A S I+++LVD +I+Y +  ++G+   
Sbjct: 177 QIILPKENLLKELMRELGKRQINTLWVEAGANLAGSLIDAKLVDELIIYIAPKLLGDNAR 236

Query: 326 P----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
                  L +      +     +  G D+ L Y  K
Sbjct: 237 GLCQLPNLTKLADAPLWQLNELEQIGDDIKLTYTPK 272


>gi|302831894|ref|XP_002947512.1| hypothetical protein VOLCADRAFT_57231 [Volvox carteri f.
           nagariensis]
 gi|300267376|gb|EFJ51560.1| hypothetical protein VOLCADRAFT_57231 [Volvox carteri f.
           nagariensis]
          Length = 547

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 91/349 (26%), Positives = 143/349 (40%), Gaps = 15/349 (4%)

Query: 23  GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
           G+T  +P++AC++V  DG  I        G   AEV A+  AG  ARGATAY+ LE    
Sbjct: 1   GVTQPHPNMACILVGPDGSKISEAYQRAQGTTSAEVLAVTAAGGAARGATAYLNLESGDC 60

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS-------QKGIIVDRMMESEG 134
           +G        ++  G+ RVVV +  P   +  R +  L                   S  
Sbjct: 61  HGEM-AAVDALVRGGVSRVVVGLRHPLRHLRSRAIGMLRAGSFDGDDATSAAAYGAMSAC 119

Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
                A L R V +R    LK A++ D  I      S  ++   S+  V  +RA+SDA++
Sbjct: 120 LAANEALLHRSVLRRPLGVLKYAMTLDGKIATNIGHSSWVSSPQSRGLVFEMRARSDAVI 179

Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
           VG  TV  D+P LT R  G   H+P RI++     L  D+ +    L   +++       
Sbjct: 180 VGGNTVRRDNPRLTTRREG--GHTPARIVMSRTLDLPEDANLWDVTLAPTIVLTQRGART 237

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
               A R   + ++  D    + +      RG      E G  +A   I S +V  ++ +
Sbjct: 238 RFQAALRSAGVEVVEFDFLTPESVADYCQERGFLQCFWECGGTLAAPTIASGVVHKVMAF 297

Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQE 363
            +  +IG    P+P+ E    +    V      SD     +G +L +  
Sbjct: 298 VAPKIIGGVRAPTPVGELGFVEMTQAVEL----SDTSWSQVGPDLMMTG 342


>gi|46204084|ref|ZP_00209252.1| COG1985: Pyrimidine reductase, riboflavin biosynthesis
           [Magnetospirillum magnetotacticum MS-1]
          Length = 320

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 100/334 (29%), Positives = 155/334 (46%), Gaps = 49/334 (14%)

Query: 42  IGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
           +  G     G PHAE  AL +A   G +  GATA VTLEPC+H GR+ PCA  ++  G+ 
Sbjct: 2   LAEGWHRGAGTPHAEAAALADARARGVDVAGATAVVTLEPCAHTGRTGPCADALVAAGVA 61

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
            VV+ VDDP+  V+  G   L   G+ +V  +  +EG+  L  +LT       ++TLK A
Sbjct: 62  EVVLAVDDPNP-VATGGAHRLRAAGVRVVRGLRAAEGEELLRVWLTAVRRGTPYVTLKTA 120

Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG---- 213
            + D  +      S  ITG  ++   H +RA+ DAI+VG GT+LADDPELT R+ G    
Sbjct: 121 TTLDGYVAAQDGTSRWITGPAAREHAHRVRAEVDAIVVGTGTLLADDPELTARVRGHGPS 180

Query: 214 ------------LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
                       L EH P+R+++     +   +++                        R
Sbjct: 181 HDAAHDAASAARLAEHQPLRVVVGLRG-IPPAARV------------------------R 215

Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            +   +++   RD+ ++L  L  R V  +LVEGG  +A +F+ +  VD +  Y + +++G
Sbjct: 216 GEGSELVHVLTRDVGEVLERLAEREVRHVLVEGGPTLATAFLAAGAVDELHAYVAPVLLG 275

Query: 322 EGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCL 352
            G        +        F  V     G D  +
Sbjct: 276 NGRRAVDGLGVATIADAHRFRTVEVRRVGDDALV 309


>gi|325963044|ref|YP_004240950.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469131|gb|ADX72816.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 386

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 101/348 (29%), Positives = 156/348 (44%), Gaps = 36/348 (10%)

Query: 22  VGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLE 77
            G    NP V  ++V   G  +  G     G  HAE  A+ +A   G +  G T  VTLE
Sbjct: 41  RGPRGANPLVGAVVVDPGGRPLVTGFHRGAGTAHAEADAIAQAAAAGLDLTGCTMVVTLE 100

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKI 136
           PC+H GR+ PCA  II  GI  VV  VDDP    +G G   L + G+ +   +  +E   
Sbjct: 101 PCNHVGRTGPCAAAIIAAGITDVVYAVDDPHDPAAG-GATTLREAGVRVRSGLGATESLD 159

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
               +      KR  +TL IA + D+ I      S  I+   S    H +R + DAILVG
Sbjct: 160 LNRQWFEAVAAKRPFVTLHIAQTLDSRIAAEDGTSQWISSPESLADNHAIRGRIDAILVG 219

Query: 197 IGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
             TVL D+P LT R     L    P+R ++     +  D+ +                  
Sbjct: 220 TQTVLVDNPRLTAREPSGELASKQPVRAVMGMR-DIPADAAV------------------ 260

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
                   ++  +++   RD ++ L+IL   G+  L+VEGG+ +  +F+ + LVD +I+Y
Sbjct: 261 ------HGRDGRVVHLPTRDPREALSILYAHGIRHLMVEGGSRILSAFLAAELVDELIVY 314

Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIGKNLCL 361
            +  ++G  G P+ L    +         D+  SD   +  +G++L L
Sbjct: 315 LAPTLLGS-GTPA-LTGLGITTLADAQHWDWDPSDGGSVRTLGQDLRL 360


>gi|108804202|ref|YP_644139.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Rubrobacter xylanophilus DSM 9941]
 gi|108765445|gb|ABG04327.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Rubrobacter xylanophilus DSM 9941]
          Length = 369

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 118/360 (32%), Positives = 174/360 (48%), Gaps = 16/360 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A   +       + NP V  ++V+ G V+G G     G  HAE  AL  AG  ARGA
Sbjct: 1   MDLARELAERGRYTAAPNPLVGAVVVRGGAVVGEGWHVRPGEEHAEAMALRRAGAAARGA 60

Query: 71  TAYVTLEPCSHYGRSP--PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           T YVTLEPC+H+ R+P  PCA+ ++  GIRR+VV   DP+ RV+GR L+ L + G+ V+ 
Sbjct: 61  TMYVTLEPCNHHLRTPGPPCAEAVLRAGIRRLVVGHADPNPRVNGRSLRRLREAGVEVEV 120

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + +   +     +       R  + LK+AV+ D  I  AG  S  +TG  ++ + H LRA
Sbjct: 121 LDDPVFERQNERFFWAMRRGRPFVHLKLAVTLDGRIAAAGGDSRWVTGPEARRRAHALRA 180

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSP--MRIILDPHFKLSLDSKIIKTALLAPVI 246
           ++ A+LVG GT  ADDP LT R  GL E  P  +R +LDP   L   S+++ TA   P++
Sbjct: 181 EAGAVLVGAGTARADDPLLTPR--GLDEEPPRVLRAVLDPRLTLPEASRLVSTAPEWPLV 238

Query: 247 IVT-ENDDPVLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
           +   E   P            +           DL  +L  L  RG + +LVEGG   A 
Sbjct: 239 VFCAEGASPRRRRRLEAAGAEVEAVPAAGDGGLDLGAVLERLRLRGASGVLVEGGGQTAR 298

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
            F+   LV+ + L+ +  + G  G+P      +        F     +  G D+ +    
Sbjct: 299 RFVAGGLVNKMTLFYAPRLAGADGVPMVGGLRVTRMAQAPRFSVAGVERLGDDLAVTLYP 358


>gi|288926889|ref|ZP_06420789.1| riboflavin biosynthesis protein RibD [Prevotella buccae D17]
 gi|288336328|gb|EFC74709.1| riboflavin biosynthesis protein RibD [Prevotella buccae D17]
          Length = 286

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 85/264 (32%), Positives = 123/264 (46%), Gaps = 9/264 (3%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D +FM   L+ +R        NP V  +IV  DG +IG G     G  HAEV A      
Sbjct: 26  DEKFMRRCLQLARNGRQNAKPNPMVGAVIVSPDGRIIGEGYHVRCGEGHAEVNAFASVRP 85

Query: 66  EARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           E       +T YV+LEPCSH+G++PPCA  I+  G+RRVV    DP   VSGRG++ + +
Sbjct: 86  EDEALLHESTIYVSLEPCSHFGKTPPCADLIVRKGVRRVVCGCIDPFAEVSGRGVERIRK 145

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +   ++E E       ++      R +ITLK A + D  +      ++PI+   +K
Sbjct: 146 AGIEVTVGVLEQECLTLNRRFIVCNERDRPYITLKWAQTADGFLDDH-GRALPISSPFTK 204

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              H LRA++DAILVG  T   + P L  R        P RI+L     ++     +   
Sbjct: 205 MLSHKLRAENDAILVGRVTEEREHPRLDVR--EWSGPDPERIVLGHGASVTGILARLYEE 262

Query: 241 LLAPVIIVTENDDPVLALAFRKKN 264
               +I+     DP +    R   
Sbjct: 263 KKQSLIVEGGGTDPTVVSRCRPLG 286


>gi|126640314|ref|YP_001083298.1| hypothetical protein A1S_0221 [Acinetobacter baumannii ATCC 17978]
          Length = 288

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 86/292 (29%), Positives = 142/292 (48%), Gaps = 18/292 (6%)

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMES 132
           +TLEPC+HYGR+PPCA+ +++  +++VVV   DP+  V+G+G+Q L   GI +   + E 
Sbjct: 1   MTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILKNAGIEVEIGICED 60

Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
                   +L        ++ LK+A S D    MA   S  ITG  ++  V   RA S A
Sbjct: 61  LAAQLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAARQDVQHWRAISGA 120

Query: 193 ILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           ++ GI TV+ DD +L  R    ++      P R+ILD   +L L +KI++       ++V
Sbjct: 121 VITGIDTVIVDDCQLNVRSLHNIDIETVAQPKRVILDRRGRLPLTAKILEN---PETVMV 177

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRL 307
                  LA      ++ +I  + + LK LL  L  +  +  +LVE GA ++ +F+   L
Sbjct: 178 MGPYRQELA------DLGVIQLEIQPLKTLLQTLSKQYQIYDVLVEAGATLSTAFLQEGL 231

Query: 308 VDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
           VD +I Y +  ++G+       +  E    +  F  +       D+ L  I 
Sbjct: 232 VDEMISYVAPTLLGQSARAMFNADFEYMAQQLRFKLLDVTQLDQDIRLRLIP 283


>gi|115446113|ref|NP_001046836.1| Os02g0473000 [Oryza sativa Japonica Group]
 gi|113536367|dbj|BAF08750.1| Os02g0473000 [Oryza sativa Japonica Group]
          Length = 490

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 128/294 (43%), Gaps = 18/294 (6%)

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI-- 136
              YG S   +  +++ GI RVVV +  P   + G+ +Q L  +GI VD + E       
Sbjct: 1   GDCYGDSTAVST-LVQAGITRVVVGLRHPLKHLRGKAIQSLRNEGIQVDVVGEDLHSKLF 59

Query: 137 ---------FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
                         L R   +     LK A++ D  I  +   +  ++G  S+ +V  LR
Sbjct: 60  KEALKSCLIVNAPLLYRAAFRVPFSVLKYAMTADGKIAASSGHASWVSGKSSRGRVFELR 119

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            +SDAI+VG  TV  DDP LT R   ++ H P+RI++     L  ++ +        ++ 
Sbjct: 120 GRSDAIIVGGNTVRLDDPRLTAR--HVKGHVPVRIVMSQSLNLPEEANLWNVHDAYTIVA 177

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
                   L      K + ++  D  + + +++    RG  S+L E G  +A S I++ +
Sbjct: 178 TQRGARRDLQKKLALKGVEVVEFDMLNPRDVMSYCYDRGYLSVLWECGGTLAASAISASV 237

Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           +  +  + +  +IG    P+P+ E  + +    +       DV  E I +++ +
Sbjct: 238 IHKVYAFLAPKIIGGVNAPTPVGELGMNQMTQAIDLI----DVSYEQIDRDMLM 287


>gi|160937911|ref|ZP_02085269.1| hypothetical protein CLOBOL_02805 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439137|gb|EDP16891.1| hypothetical protein CLOBOL_02805 [Clostridium bolteae ATCC
           BAA-613]
          Length = 262

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 72/263 (27%), Positives = 119/263 (45%), Gaps = 13/263 (4%)

Query: 111 VSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC 169
           VSG+G + L   GI + + ++E E +   H +       R  + +K A++ D        
Sbjct: 2   VSGKGTKILVANGIEVTEGILEEECRELNHVFFHYIKTGRPLVIMKYAMTLDGKTATFAG 61

Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229
            S  ITG  ++ +VH  R++  A++ G+ T+LADD  LTCRL      +P+RII D   +
Sbjct: 62  HSRWITGERARRRVHEDRSRYSAVMCGVETILADDSLLTCRLPDT--RNPVRIICDSQLR 119

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGR 285
              DS++  T   A  I+ T   D    L + +K   I+    R    DL  L   L   
Sbjct: 120 TPPDSQVAATCSQARTILATCCPDREAWLPYEEKGCEILLLPPREGRVDLNALTERLGQM 179

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM-----C 340
           G+ S+L+EGG+ +  S +N  +V+ +  Y S  + G     +P+    +E  +       
Sbjct: 180 GIDSVLLEGGSTLNWSALNQGIVNRVQAYISPGLFGGATAKTPVGGRGVEFPYQGFSLGK 239

Query: 341 VRRDYFGSDVCLEYIGKNLCLQE 363
            +      D+ +E      C QE
Sbjct: 240 TKITVLDQDILIEGELM-PCSQE 261


>gi|256372450|ref|YP_003110274.1| riboflavin biosynthesis protein RibD [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256009034|gb|ACU54601.1| riboflavin biosynthesis protein RibD [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 350

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 113/334 (33%), Positives = 157/334 (47%), Gaps = 42/334 (12%)

Query: 27  TNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86
            NP V  +I +DG+V+G G TA+ G PHAEV AL  AG  ARGA   VTLEPC+H+GR+P
Sbjct: 21  PNPWVGAVIERDGVVVGVGRTAHPGGPHAEVAALAAAGALARGAQMSVTLEPCAHHGRTP 80

Query: 87  PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV---DRMMESEGKIFLHAYLT 143
           PC   IIE G+ RV V + DPD RV GRG+Q L   G+ V    R M +     L  YL+
Sbjct: 81  PCVDAIIEAGVARVEVGLIDPDPRVRGRGIQALQAAGVEVRLAPRAMRARLADDLAPYLS 140

Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203
            ++  R  +  KIA S D  +      S  IT   ++   H LRA+ DAI+VG GT   D
Sbjct: 141 HRLRGRPFVVGKIACSLDGAVADRWGQSKWITQEAARELGHRLRAEVDAIIVGRGTFERD 200

Query: 204 DPELTCRLNG-LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
            P+LT R  G L    P+R++        LD          P   V  ++ P   LA   
Sbjct: 201 RPQLTARPGGRLARRQPVRVVASRR---PLD---------VPEGFVVASESPGALLAAGA 248

Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
                                 RG   +LVEGG  +  +++   LVD +++  + I++G+
Sbjct: 249 A---------------------RGWVEVLVEGGPTLLGAYLAEGLVDELLVAIAPILLGD 287

Query: 323 GGIPSPLEEGYLEKNFMCVR-----RDYFGSDVC 351
                 ++ G        +R         G D+ 
Sbjct: 288 EHARHAVDLGEGRLLEDAIRGAWRAHRRVGEDLV 321


>gi|6572094|emb|CAB63087.1| riboflavin-specific deaminase [Bartonella clarridgeiae]
          Length = 227

 Score =  208 bits (531), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 130/222 (58%), Gaps = 7/222 (3%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           +R  +TLK+A+S DN +G  G  ++ I+G IS +Q H+LRAQ+D I+VGIGT+LADDP+L
Sbjct: 6   QRCEVTLKMAISADNGVGKKGQSNLKISGEISHSQTHILRAQNDVIMVGIGTILADDPKL 65

Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN--DDPVLALAFRKKNI 265
            CRL GL+  SP+R+ILD + ++ LD+K+++TA   P  ++           +A  +  +
Sbjct: 66  DCRLPGLEMRSPIRVILDKNLRIPLDAKVVQTAANIPTWVICGTVLSKKRKKIALEQYGV 125

Query: 266 NIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            +   +  +       +L +L  R + S+L+EGGA     F+N+  VD +I + + I++G
Sbjct: 126 TVCSVEVTNNLIPPLAILRLLYQRKINSVLLEGGAKTGEIFLNASCVDRLICFYAPIILG 185

Query: 322 EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQE 363
           +  I +P  E YL + F  +     G+D   ++  K LC Q 
Sbjct: 186 KDRIEAPHFESYLSE-FNKIEMRMLGNDRLYKWRRKILCSQG 226


>gi|255325997|ref|ZP_05367085.1| riboflavin biosynthesis protein RibD [Rothia mucilaginosa ATCC
           25296]
 gi|255296888|gb|EET76217.1| riboflavin biosynthesis protein RibD [Rothia mucilaginosa ATCC
           25296]
          Length = 436

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 102/368 (27%), Positives = 162/368 (44%), Gaps = 40/368 (10%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           A  M+ AL+ +R   G+   NP V  +I    G ++  G     G PHAE  AL  A   
Sbjct: 61  AEAMTLALQAAR--QGIRGANPLVGAVITDAHGHLLHVGYHRGAGTPHAEADALAAARAA 118

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G +  GA  YV+LEPC+H GR+ PC+  + E GI  +     D D   +  G  +L  +G
Sbjct: 119 GTDLTGARMYVSLEPCNHTGRTGPCSHAVAEAGINELYYAYSD-DTENAAGGAAYLRSQG 177

Query: 124 IIVDRMME--SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           + V  M E  +   +    +     E+R  IT K A + D  I  A   S  ITG  ++ 
Sbjct: 178 VTVHAMEEFANASYLLNERWFIAAAERRPFITAKSASTLDGFIAAADGTSKWITGPAARI 237

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKT 239
             HL+R ++DA+++G  T L DDP L  R    +  E  P+R+++    +++ + ++   
Sbjct: 238 DGHLIRHRADAVMIGTRTTLMDDPTLDARDANGERFEKQPLRVVM-GKTEITENYRVRGL 296

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
                V       DP           N +     D ++LL  L  RGV  L++EGG  + 
Sbjct: 297 NPPEGV-----EADPQ----------NFLQVFTHDPRELLDELYARGVRHLMIEGGPGMV 341

Query: 300 HSFINSRLVDSIILYRSQIVIGEGG-----------IPSPLEEGYLEKNFMCVRRDYFGS 348
             F    L+D ++ YR+ +++G+G              +P  +      F  VR    G+
Sbjct: 342 GLFAGEDLIDEMVWYRAPMIMGQGKSAVYRLLVDTLAQAPRLQLDDLGMFPAVRV--LGN 399

Query: 349 DVCLEYIG 356
           D     + 
Sbjct: 400 DTATHLVP 407


>gi|283458202|ref|YP_003362820.1| pyrimidine reductase, riboflavin biosynthesis [Rothia mucilaginosa
           DY-18]
 gi|283134235|dbj|BAI65000.1| pyrimidine reductase, riboflavin biosynthesis [Rothia mucilaginosa
           DY-18]
          Length = 436

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 101/368 (27%), Positives = 160/368 (43%), Gaps = 40/368 (10%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA--- 63
           A  M+ AL+ +R   G+   NP V  +I    G ++  G     G PHAE  AL  A   
Sbjct: 61  AEAMTLALQAAR--QGIRGANPLVGAVITDAHGHLLHVGYHRGAGTPHAEADALAAARAA 118

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G +  GA  YV+LEPC+H GR+ PC+  + E GI  +     D D   +  G  +L  +G
Sbjct: 119 GTDLTGARMYVSLEPCNHTGRTGPCSHAVAEAGISELYYAYSD-DTENAAGGAAYLRSQG 177

Query: 124 IIVDRMME--SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           + V  M E  +        +     E+R  IT K A + D  I  A   S  ITG  ++ 
Sbjct: 178 VTVHAMEEFANASYQLNERWFIAAAERRPFITAKSASTLDGFIAAADGTSKWITGPAARI 237

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKT 239
             HL+R ++DA+++G  T L DDP L  R    +  E  P+R+++    +++ + ++   
Sbjct: 238 DGHLIRHRADAVMIGTRTTLMDDPTLDARDANGERFEKQPLRVVM-GKTEITENYRVRGL 296

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
                V       DP           N +     D ++LL  L  RGV  L++EGG  + 
Sbjct: 297 NPPEGV-----EADPQ----------NFLQVFTHDPRELLDELYARGVRHLMIEGGPGMV 341

Query: 300 HSFINSRLVDSIILYRSQIVIGEGG-----------IPSPLEEGYLEKNFMCVRRDYFGS 348
             F     +D ++ YR+ +++G+G              +P  +      F  VR    G+
Sbjct: 342 GLFAGEDFIDEMVWYRAPMIMGQGKSAVYRLLVDTLAQAPRLQLDDLGMFPAVRV--LGN 399

Query: 349 DVCLEYIG 356
           D     + 
Sbjct: 400 DTATHLVP 407


>gi|148555358|ref|YP_001262940.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Sphingomonas wittichii RW1]
 gi|148500548|gb|ABQ68802.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Sphingomonas wittichii RW1]
          Length = 313

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 125/352 (35%), Positives = 168/352 (47%), Gaps = 46/352 (13%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M +A+  +    G T+ NP+V C+IV+DG VIGRG T  GG PHAE  A+E AG+ A GA
Sbjct: 1   MLSAVALAGRGRGRTAPNPNVGCVIVRDGRVIGRGWTGAGGRPHAEAIAIEAAGDLA-GA 59

Query: 71  TAYVTLEPCSH-YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128
           T YVTLEPC+H   R P CA  I+     RVV+ + DPD R  GRG+  ++  GI +   
Sbjct: 60  TLYVTLEPCAHVSARGPACADLIVAAKPARVVIALRDPDPRTDGRGIARITAAGIAVATG 119

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           +     +  +  +LTR+ + R H+TLK+A S D  I +    S  ITG  ++   HL RA
Sbjct: 120 VEAEAARASMAGFLTRRSKGRPHVTLKLATSLDGRIALPDRSSRWITGPAARAHAHLERA 179

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + + ILVG GT+ AD P L  RL GL+E SP R +L                        
Sbjct: 180 RHEMILVGRGTLEADSPGLDVRLPGLEERSPRRAVLGH---------------------- 217

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
                P    A R         D  D+  L       GV  L VEGGA  A +F+ + LV
Sbjct: 218 --GAAPEGWTALR---------DPADIAGL------DGVDHLFVEGGAGAAAAFLAADLV 260

Query: 309 DSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
           D ++LY + IV+G G    G     +       +        G D    Y  
Sbjct: 261 DRLLLYTAPIVVGAGRSAIGDIGLADLAAAHDRWRLADTRTLGIDRLCVYER 312


>gi|219557312|ref|ZP_03536388.1| putative bifunctional riboflavin biosynthesis protein RIBG:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           [Mycobacterium tuberculosis T17]
          Length = 237

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 90/235 (38%), Positives = 120/235 (51%), Gaps = 8/235 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
           V S D   M  A+  S    G T  NP V  +IV  +G ++G G T   G  HAEV AL 
Sbjct: 6   VKSIDEA-MGLAIEHSYQVKGTTYPNPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALR 64

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG  A GA   VT+EPC+HYG++PPC   +IE  +  VV  V DP+  ++G G   LS 
Sbjct: 65  RAGGLATGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADPN-GIAGGGAGRLSA 123

Query: 122 KGIIVDRMMESEGKI--FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
            G+ V   + +E      L  +L +Q     H+T K A S D     A   S  I+   +
Sbjct: 124 AGLQVRSGVLAEQVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAA 183

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSL 232
           +  +H  RA +DAILVG GTVLADDP LT RL    L    P+R+++     +  
Sbjct: 184 RLDLHRRRAIADAILVGTGTVLADDPALTARLADGSLAPQQPLRVVVGKR-DIPP 237


>gi|302769374|ref|XP_002968106.1| hypothetical protein SELMODRAFT_169709 [Selaginella moellendorffii]
 gi|300163750|gb|EFJ30360.1| hypothetical protein SELMODRAFT_169709 [Selaginella moellendorffii]
          Length = 375

 Score =  205 bits (523), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 99/363 (27%), Positives = 172/363 (47%), Gaps = 30/363 (8%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAG 64
            D+ +M   +  +R  +G TS NP V CLIV + G ++GRG     G PHAEV AL EAG
Sbjct: 24  DDSDYMRQCVELARRGLGRTSPNPMVGCLIVDNAGEIVGRGFHPRAGEPHAEVFALREAG 83

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            +A G+TAYV+LEPC H GR+PPC++ ++   +RRVVV   DP+  V+G+G++ L + G+
Sbjct: 84  SKAHGSTAYVSLEPCDHVGRTPPCSRALVAARVRRVVVGTVDPNPLVAGKGVERLRRAGV 143

Query: 125 IVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V   +E E       A+  R V K+    L+ A++ D  +        P T   +    
Sbjct: 144 EVTVGVEEELCRVTNEAFFHRIVTKKPFACLRYAMTIDGCLLA-----DPSTPVAASFYS 198

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII-LDPHFKLS-----LDSKII 237
             L  + DA++    ++ AD P L     G     P+R++ +     LS     L +++ 
Sbjct: 199 QQL-EEYDAVVTTEASLDAD-PVLLSAEQGA--KQPLRVVAVTSSSSLSQLAGLLSARVF 254

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE--GG 295
            T  LAP +++    + +  +  R+KN+ ++  +  DL  +L +   RG  S+L++   G
Sbjct: 255 DT-KLAPTLLLGGKGESMETV-LRRKNVEVVPVNEVDLDSVLDLCYQRGACSVLLDSTAG 312

Query: 296 AAVAH---SFINSR--LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
             +     +  +    ++  + +  +    G              +    +     G +V
Sbjct: 313 FDMLGVKEALEDEDRAVIQKLCVVVAPFAGGGQTQKV----ASSMRKLGRLTTRKCGENV 368

Query: 351 CLE 353
            ++
Sbjct: 369 VIQ 371


>gi|83717489|ref|YP_439477.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
           E264]
 gi|257142602|ref|ZP_05590864.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
           E264]
 gi|83651314|gb|ABC35378.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
           E264]
          Length = 389

 Score =  205 bits (522), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 97/365 (26%), Positives = 152/365 (41%), Gaps = 34/365 (9%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             S  D   M+ ALR +   +  T  NP V C+I +    +G G     G PHAEV AL 
Sbjct: 3   TFSDIDRMHMAHALRLAEQGLYTTHPNPRVGCVIARGAQTLGAGWHRRAGEPHAEVHALR 62

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           EAGE ARGATAYVTLEPC+H+GR+PPCA  ++  G+ RVV+   DP  +V+GRG   L+ 
Sbjct: 63  EAGERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLAD 122

Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG--FI 178
            GI+V+  ++E++ +     + +R    R      +++  D            +      
Sbjct: 123 AGIVVEQGLLEAQARELNIGFFSRIERGRPWTRATLSLPIDGPPAPDSADLAALDAAPSE 182

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII- 237
           +++ +   RA+S  +L       A D     R  G    +P  ++          + +  
Sbjct: 183 ARDDLRHWRARSSVVL-----ERAPD---AGRAVGRDGAAPRYVVSARDCAALGAASVAC 234

Query: 238 KTALLAPVIIVTEND----------------DPVLALAFRKKNINIIYCD-CRDLKKLLT 280
             A  AP + +  +D                D   A      +  +   D C  L     
Sbjct: 235 APADGAPTLALHRDDKGGRACEDACGSGHRADRADARPAGAPSAPVADTDACLPLPDAFA 294

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
            L  +GV  L VE   A+  +   + L D ++LY            +P+   +L      
Sbjct: 295 RLAKQGVNELFVEADLALCDALFGADLADELLLYAHP-----ASRDAPVSASWLAAAIDD 349

Query: 341 VRRDY 345
           V R +
Sbjct: 350 VARRW 354


>gi|184200815|ref|YP_001855022.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Kocuria rhizophila DC2201]
 gi|183581045|dbj|BAG29516.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Kocuria rhizophila DC2201]
          Length = 434

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 97/397 (24%), Positives = 151/397 (38%), Gaps = 64/397 (16%)

Query: 28  NPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE---ARGATAYVTLEPCSHYG 83
           NP V   ++   G ++  G     G PHAEV  L++A        G+T  VTLEPC H G
Sbjct: 32  NPVVGAALLGPTGQLLHVGHHRGAGTPHAEVDVLQQARAARTPLEGSTLVVTLEPCHHTG 91

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT 143
           R+ PC   +   G+ RVV  + DP     G G    S    +   ++  E +     +L 
Sbjct: 92  RTGPCTAAVEAAGVPRVVYALADPTAEARGGGAALRSHGVHVRAGLLADEARELNERWLR 151

Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203
            + + R  ++LKIA S D  +  A   S  ITG  ++ + H LR + DAILVG GT+  D
Sbjct: 152 AREQARPFVSLKIAQSLDGRVAAADGTSQWITGLPARAEGHALRTRVDAILVGGGTLRGD 211

Query: 204 DPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKII---------------------KTA 240
           DP LT R          P+R ++     +  +++I                         
Sbjct: 212 DPALTARDAEGAPCARQPLRAVMSTRP-VPPEARIRVGTAHDFTAADTAARSPVPGTDAG 270

Query: 241 LLAPVIIVTENDDPVLALAF-----------------------------------RKKNI 265
             AP              A                                       + 
Sbjct: 271 SAAPTWGAATETSAQAPDAETSMPGPGAGSPSLAPRPDAVTATPAASAPATSGPAEGLDG 330

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             ++    D ++ LT L   G   +LVEGG  VA +F+ + LVD + L+++ +++G+G  
Sbjct: 331 RFVHLSTHDPREALTRLRDLGAAHVLVEGGPTVAAAFLAADLVDELWLHQAPLLLGDGAA 390

Query: 326 PSPLEEGYLEKNFMCVRRDYFG-SDVCLEYIGKNLCL 361
                           R D  G  D  +  +G++L  
Sbjct: 391 SVGALGIGTLAAASSWRGDPVGVQDGPVAAVGEDLRW 427


>gi|215693340|dbj|BAG88722.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 404

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 96/325 (29%), Positives = 160/325 (49%), Gaps = 24/325 (7%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D  ++   +  +R   G TS NP V C++V+ G V+G G     G PHAEV AL +A 
Sbjct: 84  DDDGVYIRWCVELARKAAGHTSPNPMVGCVVVRGGRVVGEGFHPEAGQPHAEVFALRDAR 143

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           + A  ATAYV+LEPC+HYGR+PPC + +I   ++ VVV + DP+  V+ +G++ L   GI
Sbjct: 144 DLAENATAYVSLEPCNHYGRTPPCTEALINAKLKDVVVGMTDPNPIVASKGIERLQSAGI 203

Query: 125 IVDRMMESE--GKIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISKN 181
            V   ME E   +    AY+   +  ++  TL+  +S +  ++   G G+    G+ S  
Sbjct: 204 DVRVCMEEEALCRNLNEAYIHCMLTGKAFATLRTTLSVNGVVVNQIGTGADQPGGYYS-- 261

Query: 182 QVHLLRAQSDAILV-GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
               L  + D +++ GI   +   P  T    G     P+ II+       L+ + ++  
Sbjct: 262 ---QLLKEYDGVIISGISVNMTTLP--TSHEAGA--KQPLYIIIAQGGNSQLNIQFLREE 314

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV---EGG-- 295
             +  +++T  D PV     +   + ++  D   L+ +L IL  RG+ S+LV   E G  
Sbjct: 315 CASEAVVLT--DSPVTV---KPPGVEVLVLDRMSLEFILEILAQRGLCSVLVDFREAGGD 369

Query: 296 -AAVAHSFINSRLVDSIILYRSQIV 319
            A +  +F   +LV  +++    I 
Sbjct: 370 FAYLLKNFQEEKLVQKVVVELLPIW 394


>gi|218888179|ref|YP_002437500.1| riboflavin biosynthesis protein RibD [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218759133|gb|ACL10032.1| riboflavin biosynthesis protein RibD [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 419

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 101/413 (24%), Positives = 163/413 (39%), Gaps = 65/413 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
             FM  A+  +R      + NP+V  ++V+DG V+ RG     G PHAEV+ L +A   G
Sbjct: 8   EIFMREAIALARRGRWRAAPNPTVGAVLVRDGQVVARGYHTACGMPHAEVECLRDAAANG 67

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            +    T  VTLEPC+H+G++PPC+Q ++  GIR VVV + DP+  V+  G ++L Q G+
Sbjct: 68  VDPAACTLMVTLEPCNHHGKTPPCSQAVLAAGIRHVVVGMADPNP-VARGGAEFLRQHGV 126

Query: 125 IVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            VD  +  +    L   ++T +     ++ LK+A + D  I      S  I+   S+ +V
Sbjct: 127 RVDMGVCEQDCRDLVADFVTWKKTDLPYVILKLASTLDGRIATRAGHSQWISCAASRRRV 186

Query: 184 HLLR----AQSDAILVGIGTVLADDPELTCR--------------------LNGLQEHSP 219
           H +R        A+LVG GT+ AD+P LT R                            P
Sbjct: 187 HAIRAGAGHAGGAVLVGGGTLFADNPLLTARCGDFSDAFPAAPQGGCAGIDEADAPRRQP 246

Query: 220 MRIILDPHFKLSL----DSKIIKTALLAPVIIVTENDDPV-LALAFRKKNINIIYCD--- 271
           + + +            D  +++      +   TE       A   R   + +       
Sbjct: 247 LAVAVTSRMDEVAARAGDLALLQQRAADTIFWTTETAAASPAADTVRAMGVRVWGLPAAS 306

Query: 272 --------------------CRDLKKLLTIL-VGRGVTSLLVEGGAAVAHSFINSRLVDS 310
                                 DL+  L  L    G   +L EGG  +  + + + LV  
Sbjct: 307 AAHEHGETGKPGETGATSAVGLDLRAGLARLRAEAGCLYVLCEGGGQLGLALLEAGLVHE 366

Query: 311 IILYRSQIVIGEGGIPSPLEEGYLEKN------FMCVRRDYFGSDVCLEYIGK 357
             L+ +  V+G+     PL +G                    G D+ +    K
Sbjct: 367 FELHLAPKVLGDNAA-RPLFDGRAPLRMDDALGLRVADTAPSGDDIIVTLRQK 418


>gi|302773850|ref|XP_002970342.1| hypothetical protein SELMODRAFT_171495 [Selaginella moellendorffii]
 gi|300161858|gb|EFJ28472.1| hypothetical protein SELMODRAFT_171495 [Selaginella moellendorffii]
          Length = 378

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 99/363 (27%), Positives = 171/363 (47%), Gaps = 30/363 (8%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAG 64
            D+ +M   +  +R  +G TS NP V CLIV + G ++GRG     G PHAEV AL EAG
Sbjct: 27  DDSDYMRQCVELARRGLGRTSPNPMVGCLIVDNAGEIVGRGFHPRAGEPHAEVFALREAG 86

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            +A G+TAYV+LEPC H GR+PPC++ ++   +RRVVV   DP+  V+G+G++ L + G+
Sbjct: 87  SKAHGSTAYVSLEPCDHVGRTPPCSRALVAARVRRVVVGTVDPNPLVAGKGVERLRRAGV 146

Query: 125 IVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V   +E E       A+  R V K+    L+ A++ D  +        P T   +    
Sbjct: 147 EVTVGVEEELCRVTNEAFFHRMVTKKPFTCLRYAMTIDGCLLA-----DPSTPVAASFYS 201

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII-LDPHFKLS-----LDSKII 237
             L  + DA++    ++ AD P L     G     P+R++ +     LS     L +++ 
Sbjct: 202 QQL-EEYDAVVTTEASLDAD-PVLLSAEQGA--KQPLRVVAVTSSSSLSKLAGLLSARVF 257

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE--GG 295
            T  LAP +++    + +  +  R+KN+ ++  +  DL  +L +   RG  S+L++   G
Sbjct: 258 DT-KLAPTLLLGGKGESIETV-LRRKNVEVVPVNEVDLDSVLDLCNQRGACSVLLDSTAG 315

Query: 296 AAVAH---SFINSR--LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
             +     +  +    ++  + +       G              +    +     G +V
Sbjct: 316 FDMLGVKEALEDEDRAVIQKLCVVVGPFAGGGQSQKI----ASSMRKLGRLTTRKCGENV 371

Query: 351 CLE 353
            ++
Sbjct: 372 VIQ 374


>gi|301055608|ref|YP_003793819.1| riboflavin biosynthesis protein contains C-terminal domain of RibD
           [Bacillus anthracis CI]
 gi|300377777|gb|ADK06681.1| riboflavin biosynthesis protein contains C-terminal domain of RibD
           [Bacillus cereus biovar anthracis str. CI]
          Length = 216

 Score =  203 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 64/217 (29%), Positives = 98/217 (45%), Gaps = 11/217 (5%)

Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH 217
           +S D         S  ITG  ++  VH  R   DAILVG+ TV+AD+P LT R+      
Sbjct: 1   MSLDGKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNG-GK 59

Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DL 275
            P+R+ILD H +    S +I   L    IIV  + +     ++  KNI I     +  ++
Sbjct: 60  HPIRVILDTHLRTPPSSHVITDGLAPTWIIVGTDVNQEKIASYESKNIAIFQMKTKQIEI 119

Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
           + +L +L  + + SL VEGG  V  SF+ ++  + I+ Y S  +IG    P+        
Sbjct: 120 QDVLHLLGEKQILSLFVEGGQTVHASFLQTKYFNEIVTYISPKLIGGSKAPTLFGGNGFS 179

Query: 336 K-----NFMCVRRDYFGSDVCLEYIGKN---LCLQEL 364
                 +         G D+ +    +N    CLQEL
Sbjct: 180 TLQDALSLEIQEMKQIGDDIKIVAHARNEVTKCLQEL 216


>gi|296109936|ref|YP_003616885.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanocaldococcus infernus ME]
 gi|295434750|gb|ADG13921.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanocaldococcus infernus ME]
          Length = 214

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 61/211 (28%), Positives = 102/211 (48%), Gaps = 9/211 (4%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++   + +S D  +   G  S  I+      +VH LRA+ DAI+VGIGTVL DDP LT 
Sbjct: 3   PYVISNVGMSLDGKLVTVGGDSR-ISCEEDLIRVHKLRAKVDAIMVGIGTVLKDDPRLTV 61

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
                 E +P+RI++D   ++ L+++++       +I  TE  +     A     + +I 
Sbjct: 62  H-KIKSEKNPIRIVVDSSLRIPLNARVLNKE-AKTIIATTEKANKEKIKALENLGVEVIV 119

Query: 270 C--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           C  +  DLKKL+ IL  +G+ S+L+EGG  +  S     LVD + +Y + ++ G   +  
Sbjct: 120 CGKERVDLKKLMEILYEKGIRSILLEGGGTLNWSMFKEGLVDEVSVYIAPMIFGGKSVSY 179

Query: 328 PLEEGYLEKN----FMCVRRDYFGSDVCLEY 354
              EG+   +             G  + LE+
Sbjct: 180 VDGEGFKSVDEAVKLKLKNFYKLGEGIVLEF 210


>gi|254673573|emb|CBA09063.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Neisseria meningitidis alpha275]
          Length = 267

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 77/265 (29%), Positives = 122/265 (46%), Gaps = 13/265 (4%)

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           + DP+  V+G+GL  L   GI  +  ++E + +     +L+R   +R  + LK AVS D 
Sbjct: 1   MRDPNPLVAGKGLALLEVAGIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDG 60

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222
              ++   S  ITG  ++  V +LRA+S A+L GIGTVLAD+P L  R        P RI
Sbjct: 61  KTALSDGSSFWITGEDARADVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARI 119

Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLK 276
           +LD   +L  +S ++ T   +P  I T   +      +R+     I           DL 
Sbjct: 120 VLDSRLRLPPNSHLV-TDGQSPTYIATLERNEDRLHPYREHAHVRILMPSETADSKIDLH 178

Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY--- 333
            L+ +L   G   ++VE G+ +  +F+   L D I+LYRS  ++G G     L E     
Sbjct: 179 HLMRLLADEGFGEIMVEAGSELTSAFLAENLADEIVLYRSPKILGSGKDLFSLLENRAAL 238

Query: 334 -LEKNFMCVRRDYFGSDVCLEYIGK 357
                +  V  +  G D+   +   
Sbjct: 239 SAPPLWTPVSSEILGHDIKTVFRKN 263


>gi|318081273|ref|ZP_07988605.1| putative riboflavin/cytosine deaminase [Streptomyces sp. SA3_actF]
          Length = 254

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 83/201 (41%), Positives = 105/201 (52%), Gaps = 3/201 (1%)

Query: 12  SAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
             A+  +   +G T  NP V C+++   G V G G     G PHAE+ AL  AGE ARG 
Sbjct: 11  REAIALAARGLGRTRPNPVVGCVVLDASGEVAGSGWHQRAGGPHAEIHALRAAGERARGG 70

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TA VTLEPC H GR+ PC++ +IE G+RRVV  V DP    +  G   L   G+ +   +
Sbjct: 71  TALVTLEPCDHTGRTGPCSRALIEAGVRRVVHAVADP-TDQATGGADTLRAAGVDVEHGL 129

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +E E      A+LT     R H+T K A S D     A   S  IT   ++  VH LRA 
Sbjct: 130 LEREAADVNAAWLTAARLGRPHVTWKYAASLDGRTAAADGTSRWITSPEARADVHRLRAT 189

Query: 190 SDAILVGIGTVLADDPELTCR 210
            DA+LVG GT   DDP L  R
Sbjct: 190 CDAVLVGSGTARTDDPHLAVR 210


>gi|325685005|gb|EGD27144.1| riboflavin biosynthesis protein RibD [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 280

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 89/289 (30%), Positives = 140/289 (48%), Gaps = 12/289 (4%)

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMES 132
           +TLEPC HYG+ PPC Q II+ GI+RVVV   DP   V+G+G+  L Q G+ +   ++  
Sbjct: 1   MTLEPCCHYGKQPPCTQLIIDSGIKRVVVGATDPHSLVTGKGIAALRQAGLEVSTGLLAK 60

Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
           E       Y         ++TLK A++ D+M+         ITG  +  +VH  RA   A
Sbjct: 61  EASQLNDHYNYFYQTGLPYVTLKQAMTLDHMLAKK-GERTAITGAEAWTRVHQERAGYQA 119

Query: 193 ILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALLAPVIIVTE 250
           +L+G+ T + DDP L    + +  H P+R++LD   +L   LD ++      A   I+TE
Sbjct: 120 VLIGLETAIIDDPLLLTSEDLV--HPPVRVVLDRRGRLLEHLDLRLFSD-KRAETWILTE 176

Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
           N  P        K + I       +   + IL  +GV S+  EGGA +  S + + LV+ 
Sbjct: 177 N--PAFLEQDMPKQVKIFALPDGKISTSIKILADQGVQSVYAEGGAHLQESLLAAGLVND 234

Query: 311 IILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
           +I Y +   +G G   +   E     +   V+ +  G DV +    K++
Sbjct: 235 VISYVAPSFLGRGTEAAVAAEAL---DLKDVQTEQVGDDVRIYGRIKDV 280


>gi|169836055|ref|ZP_02869243.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [candidate
           division TM7 single-cell isolate TM7a]
          Length = 277

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 74/277 (26%), Positives = 135/277 (48%), Gaps = 13/277 (4%)

Query: 93  IECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSH 151
           ++ G++R V+   DP+ +V+G+G+Q L   GI + + +++SE       +    + K  +
Sbjct: 1   MKMGLKRCVIGSSDPNPKVAGKGVQILRNAGIEVRENVLKSECDKINQVFFKYIMTKIPY 60

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
           + LK A++ D  I      S  IT   ++ +V L R +   I+VGI TVLAD+P LT R+
Sbjct: 61  LFLKCAITLDGKIATKTGNSKWITNETAREKVQLYRNKFMGIMVGINTVLADNPSLTARV 120

Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF---RKKNINII 268
                 +P RII+DPHFK   +  IIK       IIVT  ++              +  +
Sbjct: 121 E--NGVNPYRIIIDPHFKTGKNHNIIKENSDEKTIIVTSKNNENSEKQLDFSENSKVKFV 178

Query: 269 YCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           + +      K++L  +   G+ S+L+EGG ++        ++D+  ++ +  ++G+    
Sbjct: 179 FLNGTKFSFKEILCKIGQIGIDSILLEGGQSLISQAFEENVIDAGEIFIANKILGDEKGK 238

Query: 327 SPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGKN 358
           S +     EK         V+ + +G +V +E+  KN
Sbjct: 239 SFIVGFDREKMDEAVILKNVKYNVYGENVGMEFWQKN 275


>gi|257483265|ref|ZP_05637306.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 167

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 73/163 (44%), Positives = 100/163 (61%), Gaps = 1/163 (0%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            ++ D  +M+ AL  +R  +  T  NP V C+IV+DG ++G G     G PHAEV AL +
Sbjct: 5   QAALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQ 64

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPCSH GR+PPCA  ++  G+ RVV  + DP+  VSGRGL  L   
Sbjct: 65  AGELARGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPEVSGRGLLRLMNA 124

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164
           GI +   ++ESE +     +L R    + +I +K+A+S D   
Sbjct: 125 GIGVQCGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRT 167


>gi|227488843|ref|ZP_03919159.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227091265|gb|EEI26577.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 277

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 97/313 (30%), Positives = 132/313 (42%), Gaps = 42/313 (13%)

Query: 58  QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            AL  AGE+ARGATAYVTLEPC+H GR+ PC+  ++E GI  VV    D     +  G  
Sbjct: 1   MALRAAGEDARGATAYVTLEPCNHTGRTGPCSHALVEAGIATVVYLTPDTSTPEAAGGGD 60

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
           +L   G+ V+ +  + G +    +  R    R   T+K+A + D         S  ITG 
Sbjct: 61  YLKSHGVEVEYLPVAVGALTPWLFAQRNH--RPMFTVKVAHTIDGYAAALDGTSQWITGE 118

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSK 235
            ++   H  R++ DAILVG GT LAD+P LT R     L E+ P +I+      +  D  
Sbjct: 119 TARAYAHRDRSRRDAILVGTGTALADNPSLTARREDGSLYENQPDKIVFGSRP-VPRDYH 177

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
           + +T                            I  D       L  LV      +LVEGG
Sbjct: 178 LYETG--------------------------FIQVDT------LEELVQLPYNDILVEGG 205

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVC 351
             V  +   + LVD+I  Y +  V+G  GIP             K F        G DV 
Sbjct: 206 PGVLSTLFTNDLVDTIHSYVASAVLGA-GIPLISTGWGTSIQDIKRFSRTDTINLGDDVL 264

Query: 352 LEYIGKNLCLQEL 364
           +       CLQ L
Sbjct: 265 IVLERHGSCLQGL 277


>gi|15668852|ref|NP_247655.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Methanocaldococcus jannaschii DSM 2661]
 gi|2493563|sp|Q58085|RIB7_METJA RecName: Full=Putative 5-amino-6-(5-phosphoribosylamino)uracil
           reductase; AltName: Full=HTP reductase
 gi|1591385|gb|AAB98665.1| riboflavin-specific deaminase (ribG) [Methanocaldococcus jannaschii
           DSM 2661]
          Length = 224

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 59/224 (26%), Positives = 104/224 (46%), Gaps = 15/224 (6%)

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
           +   +EK+ +I   + ++ D  +      S  I+      +VH +RA  D I+VGIGTVL
Sbjct: 1   MVMVMEKKPYIISNVGMTLDGKLATINNDSR-ISCEEDLIRVHKIRANVDGIMVGIGTVL 59

Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND----DPVLA 257
            DDP LT       + +P+RI++D   ++ L+++++     A  II T  D         
Sbjct: 60  KDDPRLTVH-KIKSDRNPVRIVVDSKLRVPLNARVLN--KDAKTIIATTEDTNEEKEKKI 116

Query: 258 LAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
                  + ++ C     DLKKL+ IL  +G+ S+L+EGG  +        LVD + +Y 
Sbjct: 117 KILEDMGVEVVKCGRGKVDLKKLMDILYDKGIKSILLEGGGTLNWGMFKEGLVDEVSVYI 176

Query: 316 SQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEY 354
           +  + G    P+ ++    +    CV+ +       G  + LE+
Sbjct: 177 APKIFGGKEAPTYVDGEGFKTVDECVKLELKNFYRLGEGIVLEF 220


>gi|260551097|ref|ZP_05825301.1| pyrimidine deaminase [Acinetobacter sp. RUH2624]
 gi|260405864|gb|EEW99352.1| pyrimidine deaminase [Acinetobacter sp. RUH2624]
          Length = 286

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 75/272 (27%), Positives = 124/272 (45%), Gaps = 18/272 (6%)

Query: 94  ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHI 152
           +  +++VVV   DP+  V+G+G+Q L   GI +   + E         +L        ++
Sbjct: 19  KHRLKKVVVACPDPNPLVAGKGVQILKNAGIEVEIGICEDLAAKLNQGFLKAMSTGMPYV 78

Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR-- 210
            LK+A S D    MA   S  ITG  ++  V   RA S A++ GI TV+ADD +L  R  
Sbjct: 79  RLKVASSLDGRTAMASGESKWITGSAARQDVQHWRAISGAVITGIDTVIADDCQLNVRSL 138

Query: 211 --LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
             L+      P R+ILD   +L L +KI++       ++V       LA      ++ +I
Sbjct: 139 HNLDIETVAQPKRVILDRRGRLPLTAKILEN---PETVMVMGPYRQELA------DLGVI 189

Query: 269 YCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP- 326
             + + LK LL  L  +  +  +LVE GA ++ +F+   LVD +I Y +  ++G+     
Sbjct: 190 QLEIQPLKTLLQALSKQYQIYDVLVEAGATLSTAFLQEGLVDEMISYVAPTLLGQSARAM 249

Query: 327 --SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
             +  E    +  F  +       D+ L  I 
Sbjct: 250 FNADFEYMAQQLRFKLLDVIQLDQDIRLRLIP 281


>gi|289192977|ref|YP_003458918.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanocaldococcus sp. FS406-22]
 gi|288939427|gb|ADC70182.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanocaldococcus sp. FS406-22]
          Length = 220

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 15/220 (6%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           +EK+ ++   + ++ D  +      S  I+      +VH +RA  D I+VGIGTVL D+P
Sbjct: 1   MEKKPYVISNVGMTLDGKLATINNDSR-ISCEEDLIRVHKIRANVDGIMVGIGTVLKDNP 59

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA----FR 261
            LT       + +P+RI++D   ++ L+++++     A  II T  D             
Sbjct: 60  RLTVH-KIKSDRNPVRIVVDSKLRVPLNARVLN--KDAKTIIATTEDGDEEKEKKIKILE 116

Query: 262 KKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
              I ++ C     DLKKL+ IL  +G+ S+L+EGG  +        LVD + +Y +  +
Sbjct: 117 DMGIEVVKCGRGKVDLKKLMEILYDKGIKSILLEGGGTLNWGMFKEGLVDEVSVYIAPKI 176

Query: 320 IGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEY 354
            G    P+ ++    +    CV+ +       G  + LE+
Sbjct: 177 FGGKDTPTYVDGEGFKTVDECVKLELKNFYRLGEGIVLEF 216


>gi|261403330|ref|YP_003247554.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanocaldococcus vulcanius M7]
 gi|261370323|gb|ACX73072.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanocaldococcus vulcanius M7]
          Length = 219

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 105/216 (48%), Gaps = 15/216 (6%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++   + ++ D  +      S  I+      +VH +RA+ D I+VGIGTVL DDP LT 
Sbjct: 3   PYVISNVGITLDGKLATVNNDSR-ISCEEDLIRVHKIRAKVDGIMVGIGTVLKDDPRLTV 61

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND----DPVLALAFRKKNI 265
                 + +P+RI++D   ++ L+++++ +   A  II T  D            +++ I
Sbjct: 62  H-KIKSDRNPVRIVVDSKLRVPLNARVLNSD--AKTIIATTEDLDEEKQKKIKILKERGI 118

Query: 266 NIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           +I+ C  +  DL+KL+ +L  +G+ ++L+EGG  +        LVD + +Y +  + G  
Sbjct: 119 DIVMCGEEKVDLRKLMNVLYKKGIKTILLEGGGTLNWGMFKEGLVDEVSVYIAPKIFGGK 178

Query: 324 GIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEY 354
             P+ ++    +     V+ +       G  + LE+
Sbjct: 179 NAPTYVDGEGFKSEEESVKLELKNFYRLGEGIVLEF 214


>gi|256810581|ref|YP_003127950.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanocaldococcus fervens AG86]
 gi|256793781|gb|ACV24450.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanocaldococcus fervens AG86]
          Length = 219

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 57/219 (26%), Positives = 104/219 (47%), Gaps = 15/219 (6%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
            K+ ++   + ++ D  +      S  I+      +VH +RA  D I+VGIGTVL DDP 
Sbjct: 1   MKKPYVISNVGMTLDGKLATVNNDSR-ISCEEDLIRVHKIRANVDGIMVGIGTVLKDDPR 59

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA----FRK 262
           LT       + +P+RI++D   ++ L+++++     A  II T  D            ++
Sbjct: 60  LTIH-KIKSDKNPVRIVVDSKLRIPLNARVLN--KDAKTIIATTEDTDEEKEKKINILKE 116

Query: 263 KNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
             ++++ C     DLKKL+ IL  +G+ S+L+EGG  +        LVD + +Y +  + 
Sbjct: 117 MGVDVVKCGKGRVDLKKLMEILYNKGIKSILLEGGGTLNWGMFKEGLVDEVSVYIAPKIF 176

Query: 321 GEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEY 354
           G    P+ ++    +    CV+ +       G  + LE+
Sbjct: 177 GGKEAPTYVDGKGFKTADECVKLELKNFYRLGEGIVLEF 215


>gi|300934515|ref|ZP_07149771.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Corynebacterium resistens DSM 45100]
          Length = 320

 Score =  192 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 108/333 (32%), Positives = 154/333 (46%), Gaps = 44/333 (13%)

Query: 38  DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
           DG V GRG T   G  HAE+ AL+EAG  ARG  A VTLEPC+H GR+ PC Q ++  GI
Sbjct: 6   DGEVAGRGATEPAGGRHAEIVALDEAGTRARGGRAIVTLEPCNHTGRTGPCTQALLAAGI 65

Query: 98  RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA--------YLTRQVEKR 149
            RV     DP   ++  G   L+  G+ V                      +L     KR
Sbjct: 66  VRVDYLFADPF-ELASGGANSLASAGVEVHGPYLPHPSQAAPWTPVQGVEAWLRGVKNKR 124

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++ LK+A + D  +  +   S  ITG  ++   H  RAQ DAILVG GTV ADDP+LT 
Sbjct: 125 PYVILKLAATMDGRVAASDGSSQWITGAAARGHAHARRAQVDAILVGTGTVEADDPKLTA 184

Query: 210 RLNGLQ----EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
           R +  Q    E  P+R+++  +  +  D+ +++                           
Sbjct: 185 RDDSGQPLPKELQPLRVVM-GNRSIPEDAAVMQQPGET---------------------- 221

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
                   D+ ++L  L  RGV ++LVEGG +VA +F+N+ +VD I  Y +  V+G G  
Sbjct: 222 --FLARSHDVHQVLAQLHSRGVVTVLVEGGPSVAAAFMNAGVVDEINYYCAPAVLGAGFN 279

Query: 326 P---SPLEEGYL---EKNFMCVRRDYFGSDVCL 352
               S LE G      + F        G+D+C 
Sbjct: 280 AMDGSTLEMGRTIQDLQRFRPREIQILGNDICW 312


>gi|76819539|ref|YP_335244.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1710b]
 gi|76584012|gb|ABA53486.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1710b]
          Length = 454

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 95/370 (25%), Positives = 148/370 (40%), Gaps = 40/370 (10%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M+ ALR +   +  T  NP V C+I +    +G G     G PHAEV AL E
Sbjct: 63  FSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALRE 122

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPC+H+GR+PPCA  ++  G+ RVV+   DP  +V+GRG   L+  
Sbjct: 123 AGERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADA 182

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD--NMIGMAGCGSVPITGFIS 179
           GI+V+  ++ ++ +     + +R    R      + +  D    +  A   ++      +
Sbjct: 183 GIVVEQGLLAAQARELNIGFFSRIERGRPWTRATLGLPIDAPPALDSAELAALDAALSEA 242

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           ++ +   RA+S  +L       A D     R  G    +P  ++          +     
Sbjct: 243 RDDLRHWRARSSLVL-----ERAPD---AGRAVGCNAAAPRYVVSARDCAALGAASAACA 294

Query: 240 ALLA-PVIIVTENDDPVLALAF-RKKNINIIYCDCRD----------------------L 275
                P + +  +D+   A              D  D                      L
Sbjct: 295 PADGVPTLALHRDDNSASACEDAHGIGHRARRVDRVDHADARPAGAPSASASDTDAGLPL 354

Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
                 L  +GV  LLV+   A+  +   S L D ++LY            +P+    L 
Sbjct: 355 PDAFARLARQGVNELLVDADLALCDALFGSDLADELLLYAHP-----ARRDAPVSASRLA 409

Query: 336 KNFMCVRRDY 345
                V R +
Sbjct: 410 AAIDDVARRW 419


>gi|312136821|ref|YP_004004158.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3h)-one reductase
           [Methanothermus fervidus DSM 2088]
 gi|311224540|gb|ADP77396.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Methanothermus fervidus DSM 2088]
          Length = 227

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 11/226 (4%)

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
            L  +L      R ++ L  A++ D  I      S  I+G     +VH LR + D I+VG
Sbjct: 1   MLEKFLILGDHLRPYVILNAAMTLDGKIATKTYDSK-ISGEEDLIRVHKLRKECDGIMVG 59

Query: 197 IGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
           I TV+ DDP LT   +N     +P+R+I D   +  L+++++     AP +I        
Sbjct: 60  INTVIIDDPRLTVHKINSKPSDNPVRVIADSRARTPLNARVLNNE--APTVIAVSEKAKN 117

Query: 256 LALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
             +   KK   ++    +  DL  L+  L   G+  L++EGG+ +  S ++  LVD + +
Sbjct: 118 EKVEKLKKRAKVLVLGKERVDLVALMEKLKDMGINKLMLEGGSTLNFSMLSKGLVDEVRV 177

Query: 314 YRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLEY 354
             + +++G     + ++    EK    ++         G D+ LEY
Sbjct: 178 CVAPMIVGGKDAKTLVDGPGFEKMDEAIKLKLKKYYTLGKDLILEY 223


>gi|289705541|ref|ZP_06501933.1| riboflavin biosynthesis protein RibD [Micrococcus luteus SK58]
 gi|289557770|gb|EFD51069.1| riboflavin biosynthesis protein RibD [Micrococcus luteus SK58]
          Length = 377

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 95/365 (26%), Positives = 148/365 (40%), Gaps = 42/365 (11%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE------- 62
           M  A+R +    G+   NP V  ++  + G V+  G     G  HAEV AL         
Sbjct: 12  MDLAVRAALR--GVRGANPLVGAVLTDEAGRVLAVGHHRGRGTAHAEVDALTRWRAARAA 69

Query: 63  ----AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
               A  +  G T +VTLEPC H G + PC+Q +++ GI  +   V DP     G   + 
Sbjct: 70  DPALAALDPAGLTLHVTLEPCDHTGSTGPCSQAVLDAGIGALRYAVADPTGHDGGGAARL 129

Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            +    +     E+        +   +   R  +T  +A S D     A   S  ITG  
Sbjct: 130 AAHGVRVTGPTGEAAALALSARWREVRDAGRPWVTGHLAQSLDGHAAAADGTSRWITGPD 189

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSKI 236
           S+   H +R++ DAI+VG GTVLADDP LT R     E  H P+ ++     +   D   
Sbjct: 190 SRLHAHEVRSRVDAIVVGTGTVLADDPRLTARDAAGAELAHQPVPVV--QGHRPVPDGVA 247

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
           ++     PV++   + DP   LA    +                   GR    +L+EGG 
Sbjct: 248 LR---RHPVVLEVPDHDPHAVLAALAAHPGPWP-------------HGRRAEHVLIEGGP 291

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP-SPLEEGYLEKNFMCVR-------RDYFGS 348
            V  +++ + LVD +++Y + +++G G    + L    L +                 G 
Sbjct: 292 RVLGAWLRAGLVDELMVYTAPLLLGPGRAAVAGLGVATLSEGLRWHSDPAEGGPVRVLGD 351

Query: 349 DVCLE 353
           DV   
Sbjct: 352 DVWTH 356


>gi|329850574|ref|ZP_08265419.1| riboflavin biosynthesis protein ribD [Asticcacaulis biprosthecum
           C19]
 gi|328840889|gb|EGF90460.1| riboflavin biosynthesis protein ribD [Asticcacaulis biprosthecum
           C19]
          Length = 215

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 75/210 (35%), Positives = 106/210 (50%), Gaps = 5/210 (2%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             +TLK+A + D  I  A   S  ITG  ++  VH LRA  DA+LVGI T L DDPELT 
Sbjct: 3   PQVTLKLATTLDGRIATASGESRWITGEEARRCVHELRAGHDAVLVGIETALKDDPELTV 62

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
           RL+G + + P R++LD   +L L +K+++TA + P  +VT  +     LA + K I +  
Sbjct: 63  RLHGYEGYQPTRVVLDSKGRLPLHAKMVQTARIIPTYVVTTGELSGEMLAAQVKAIKVPS 122

Query: 270 -CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS- 327
                DL   L  L   G+  L VEGG  VA +F+ +  VD +  +RS  ++G  G P  
Sbjct: 123 KHQRVDLDAALAALSKVGIERLFVEGGGVVATAFLRAGYVDRLEWFRSSTILGGDGRPVI 182

Query: 328 ---PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
               LE       F  +     G D+   Y
Sbjct: 183 GHLNLESLDQMFRFTRLGVQAVGDDLWESY 212


>gi|53722153|ref|YP_111138.1| riboflavin biosynthesis protein [Burkholderia pseudomallei K96243]
 gi|134283488|ref|ZP_01770188.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           305]
 gi|217418752|ref|ZP_03450259.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           576]
 gi|237509799|ref|ZP_04522514.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           MSHR346]
 gi|254190205|ref|ZP_04896714.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254263160|ref|ZP_04954025.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1710a]
 gi|52212567|emb|CAH38593.1| putative riboflavin biosynthesis protein [Burkholderia pseudomallei
           K96243]
 gi|134245237|gb|EBA45331.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           305]
 gi|157937882|gb|EDO93552.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           Pasteur 52237]
 gi|217398056|gb|EEC38071.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           576]
 gi|235002004|gb|EEP51428.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           MSHR346]
 gi|254214162|gb|EET03547.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1710a]
          Length = 395

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 95/370 (25%), Positives = 148/370 (40%), Gaps = 40/370 (10%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M+ ALR +   +  T  NP V C+I +    +G G     G PHAEV AL E
Sbjct: 4   FSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALRE 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPC+H+GR+PPCA  ++  G+ RVV+   DP  +V+GRG   L+  
Sbjct: 64  AGERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADA 123

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD--NMIGMAGCGSVPITGFIS 179
           GI+V+  ++ ++ +     + +R    R      + +  D    +  A   ++      +
Sbjct: 124 GIVVEQGLLAAQARELNIGFFSRIERGRPWTRATLGLPIDAPPALDSAELAALDAALSEA 183

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           ++ +   RA+S  +L       A D     R  G    +P  ++          +     
Sbjct: 184 RDDLRHWRARSSLVL-----ERAPD---AGRAVGCNAAAPRYVVSARDCAALGAASAACA 235

Query: 240 ALLA-PVIIVTENDDPVLALAF-RKKNINIIYCDCRD----------------------L 275
                P + +  +D+   A              D  D                      L
Sbjct: 236 PADGVPTLALHRDDNSASACEDAHGIGHRARRVDRVDHADARPAGAPSASASDTDAGLPL 295

Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
                 L  +GV  LLV+   A+  +   S L D ++LY            +P+    L 
Sbjct: 296 PDAFARLARQGVNELLVDADLALCDALFGSDLADELLLYAHP-----ARRDAPVSASRLA 350

Query: 336 KNFMCVRRDY 345
                V R +
Sbjct: 351 AAIDDVARRW 360


>gi|152990173|ref|YP_001355895.1| riboflavin biosynthesis protein RibG [Nitratiruptor sp. SB155-2]
 gi|151422034|dbj|BAF69538.1| riboflavin biosynthesis protein RibG [Nitratiruptor sp. SB155-2]
          Length = 333

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 81/344 (23%), Positives = 138/344 (40%), Gaps = 69/344 (20%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE- 61
           + ++D  FM  AL+ +  + GLT  NP+V  ++  +  +I +G     G PHAEV+A++ 
Sbjct: 1   MVNYDNFFMDIALQEAWRYQGLTYPNPAVGAVVAINNCIISKGAHTKAGAPHAEVEAIKN 60

Query: 62  --------------------------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                                      A +    AT YVTLEPC+H+G++PPC+  I + 
Sbjct: 61  AYYTLTGDEHVLHLQDALELHEYLVANAKDLFHNATIYVTLEPCNHFGKTPPCSLLIKKL 120

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
           G +RVV+ + DP+   +  G  +L   GI VD  ++ E    L         +    T  
Sbjct: 121 GFQRVVIALKDPN-EEAAGGASFLRNCGIEVDIGIQEERAKVL----IEPFLQWRSSTFT 175

Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215
                    G+   G   I+G  S+  VH LR + + +++G  TV  D P L  R+ G  
Sbjct: 176 FFKLAQAFNGVIDGGI--ISGAESRKYVHALRDRIELLVIGGNTVRTDRPILDARMVG-- 231

Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275
             +P  +I     +      + +       + V E+ D + A                  
Sbjct: 232 GKAPDILIYSRKKEFDTTIPLFQIPNRK--VFVEESLDRIKA------------------ 271

Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
                         +++EGG  +  +     LVD  + + + I+
Sbjct: 272 -----------YRYVMIEGGEGMLEA--TKDLVDWYLFFVAPIL 302


>gi|150401090|ref|YP_001324856.1| hypothetical protein Maeo_0660 [Methanococcus aeolicus Nankai-3]
 gi|150013793|gb|ABR56244.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanococcus aeolicus Nankai-3]
          Length = 247

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 105/221 (47%), Gaps = 15/221 (6%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             +   + +S D  +      S  I+G     +VH +R   D I+VGIGTVL DDP LT 
Sbjct: 28  PFVISNVGMSLDGKLATIENDSR-ISGEDDLKRVHKIRKSVDGIMVGIGTVLKDDPRLTV 86

Query: 210 R-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP-----VLALAFRKK 263
             +N  +E +P+RI++D + ++ L+++++       +I  TEN               KK
Sbjct: 87  HKINAKKEDNPIRIVVDSNLRIPLNARVLNDD-ATTIIATTENMGENKNINEKIRELAKK 145

Query: 264 NINII--YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           NI II    D  DL KL+ +L  +G+ ++L+EGG  +      + LVD + +Y +  + G
Sbjct: 146 NIIIIKTGIDKVDLVKLMELLYKKGIKNILLEGGGTLNWGMFENNLVDEVRVYIAPKIFG 205

Query: 322 EGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIGK 357
             G P+ ++    +    C++            + +EY  K
Sbjct: 206 GKGAPTFVDGDGFKTVDECIKLALKNCYKLDDGIVIEYTVK 246


>gi|126457369|ref|YP_001075539.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1106a]
 gi|242313881|ref|ZP_04812898.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1106b]
 gi|126231137|gb|ABN94550.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1106a]
 gi|242137120|gb|EES23523.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           1106b]
          Length = 395

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 96/370 (25%), Positives = 148/370 (40%), Gaps = 40/370 (10%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M+ ALR +   +  T  NP V C+I +    +G G     G PHAEV AL E
Sbjct: 4   FSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALRE 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPC+H+GR+PPCA  ++  G+ RVV+   DP  +V+GRG   L+  
Sbjct: 64  AGERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADA 123

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD--NMIGMAGCGSVPITGFIS 179
           GI+V+  ++ ++ +     + +R    R      + +  D    +  A   ++      +
Sbjct: 124 GIVVEQGLLAAQARELNIGFFSRIERGRPWTRATLGLPIDAPPALDSAELAALDAALSEA 183

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           ++ +   RA+S  +L       A D     R  G    +P  ++          +     
Sbjct: 184 RDDLRHWRARSSLVL-----ERAPD---AGRAVGCNAAAPRYVVSARDCAALGAASAACA 235

Query: 240 ALLA-PVIIVTEND-------------------DPVLALAFRKKNINIIYCDCRD----L 275
                P + +  +D                   D V     R            D    L
Sbjct: 236 PADGVPTLALHRDDNSASACEDAHGIGHRARRVDRVDHADARPAGAPSASAPDTDAGLPL 295

Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
                 L  +GV  LLV+   A+  +   S L D ++LY            +P+    L 
Sbjct: 296 PDAFARLARQGVNELLVDADLALCDALFGSDLADELLLYAHP-----ARRDAPVSASRLA 350

Query: 336 KNFMCVRRDY 345
                V R +
Sbjct: 351 AAIDDVARRW 360


>gi|167906520|ref|ZP_02493725.1| riboflavin biosynthesis protein [Burkholderia pseudomallei NCTC
           13177]
          Length = 397

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 94/372 (25%), Positives = 147/372 (39%), Gaps = 42/372 (11%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M+ ALR +   +  T  NP V C+I +    +G G     G PHAEV AL E
Sbjct: 4   FSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALRE 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPC+H+GR+PPCA  ++  G+ RVV+   DP  +V+GRG   L+  
Sbjct: 64  AGERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADA 123

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD--NMIGMAGCGSVPITGFIS 179
           GI+V+  ++ ++ +     + +R    R      + +  D    +  A   ++      +
Sbjct: 124 GIVVEQGLLAAQARELNIGFFSRIERGRPWTRATLGLPIDAPPALDSAELAALDAALSEA 183

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           ++ +   RA+S  +L       A D     R  G    +P  ++          +     
Sbjct: 184 RDDLRHWRARSSLVL-----ERAPD---AGRAVGCNAAAPRYVVSARDCAALGAASAACA 235

Query: 240 ALLA-PVIIVTENDDPVLALAF-RKKNINIIYCDCRD----------------------- 274
                P + +  +D+   A              D  D                       
Sbjct: 236 PADGVPTLALHRDDNSASACEDAHGTGHRARRVDRVDHADARPAGAPSASASAPDTDAGL 295

Query: 275 -LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
            L      L  +GV  LLV+   A+  +   S L D ++LY            +P+    
Sbjct: 296 PLPDAFARLARQGVNELLVDADLALCDALFGSDLADELLLYAHP-----ARRDAPVSASR 350

Query: 334 LEKNFMCVRRDY 345
                  V R +
Sbjct: 351 FAAAIDNVARRW 362


>gi|294670266|ref|ZP_06735159.1| riboflavin biosynthesis protein RibD [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308003|gb|EFE49246.1| riboflavin biosynthesis protein RibD [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 260

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 115/220 (52%), Gaps = 6/220 (2%)

Query: 111 VSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC 169
           ++G+GL  LS  GI  +  ++E+E +     +L+R    R  + LK A S D    ++  
Sbjct: 1   MAGKGLSMLSAAGIRTESGLLETEARELNRGFLSRIERGRPFVRLKCAASLDGKTALSDG 60

Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229
            S  ITG  +++ V +LRA+S A+L GIGTVLADDP+L  R        P+RI+LD   +
Sbjct: 61  LSQWITGEAARHDVQILRAESCAVLTGIGTVLADDPQLNVR-AFPTLRQPLRIVLDSRLR 119

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGR 285
           L   +K++       +++     +   A      +++I+     D    L  +LT+L  R
Sbjct: 120 LPPTTKLLADPASPVLLLTAVPPEKYPAALTAVPHLDILTVPAADGRISLPAVLTLLAER 179

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           G+  LLVE GA +  +F+ + L D I+LY++  ++G    
Sbjct: 180 GIGELLVEAGATLCGAFLQAGLADEIVLYQAGKILGGDAR 219


>gi|254193400|ref|ZP_04899834.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           S13]
 gi|169650153|gb|EDS82846.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           S13]
          Length = 398

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 95/373 (25%), Positives = 148/373 (39%), Gaps = 43/373 (11%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M+ ALR +   +  T  NP V C+I +    +G G     G PHAEV AL E
Sbjct: 4   FSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALRE 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPC+H+GR+PPCA  ++  G+ RVV+   DP  +V+GRG   L+  
Sbjct: 64  AGERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADA 123

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD--NMIGMAGCGSVPITGFIS 179
           GI+V+  ++ ++ +     + +R    R      + +  D    +  A   ++      +
Sbjct: 124 GIVVEQGLLAAQARELNIGFFSRIERGRPWTRATLGLPIDAPPALDSAELAALDAALSEA 183

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           ++ +   RA+S  +L       A D     R  G    +P  ++          +     
Sbjct: 184 RDDLRHWRARSSLVL-----ERAPD---AGRAVGCNAAAPRYVVSARDCAALGAASAACA 235

Query: 240 ALLA-PVIIVTENDDPVLALAF----------------------RKKNINIIYCDCRD-- 274
                P + +  +D+   A                         R            D  
Sbjct: 236 PADGVPTLALHRDDNSASACEDAHGIGHRARRVDRVDRVDHADARPAGAPSASAPDTDAG 295

Query: 275 --LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
             L      L  +GV  LLV+   A+  +   S L D ++LY            +P+   
Sbjct: 296 LPLPDAFARLARQGVNELLVDADLALCDALFGSDLADELLLYAHP-----ARRDAPVSAS 350

Query: 333 YLEKNFMCVRRDY 345
            L      V R +
Sbjct: 351 RLAAAIDDVARRW 363


>gi|325959850|ref|YP_004291316.1| Riboflavin-specific deaminase domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325331282|gb|ADZ10344.1| Riboflavin-specific deaminase domain protein [Methanobacterium sp.
           AL-21]
          Length = 226

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 58/216 (26%), Positives = 109/216 (50%), Gaps = 9/216 (4%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
             ++ +  L  A++ D  I      S  I+G     +VH LR + DAI+VGI TVLADDP
Sbjct: 5   NYEKPYTILNSAMTLDGKIATKTGSS-EISGQEDLVRVHELRMEVDAIMVGINTVLADDP 63

Query: 206 ELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK- 263
            LT   +   +  +P+RI++D   +  L+ +I+ +     ++ VT+  DPV     ++  
Sbjct: 64  RLTVHKIPSSKSDNPLRIVVDSRARTPLNFRILNSD-AKTLLAVTQAADPVKVNKLKQLV 122

Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           ++ +      DLK L+  L   G+ +L++EGG+ + +S ++  LVD + +  + +V G  
Sbjct: 123 DVVVCGEKHVDLKNLMKHLYELGIKTLMLEGGSTLNYSMLSEGLVDEVRVCIAPMVAGGK 182

Query: 324 GIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLEY 354
              +  +    ++    V+ ++      G D+ +EY
Sbjct: 183 YAKTLADGDGFDEMKDSVKLEFKKSYTLGDDLIVEY 218


>gi|218514099|ref|ZP_03510939.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
           [Rhizobium etli 8C-3]
          Length = 179

 Score =  189 bits (480), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 107/179 (59%), Positives = 133/179 (74%), Gaps = 1/179 (0%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M V+  D  FM+AA+R SR H+G T+TNPSV CLIVKDG+++G+ VTA GG PHAE QAL
Sbjct: 1   MSVTPDDEGFMAAAIRLSRQHLGRTATNPSVGCLIVKDGVIVGQAVTALGGRPHAEPQAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAG+ ARGATAYVTLEPCSH+G++PPCA+ +I  G+ RVV+ V DPD RVSGRG+  L 
Sbjct: 61  AEAGQLARGATAYVTLEPCSHHGKTPPCAEALIAYGVARVVISVTDPDPRVSGRGITMLR 120

Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
             GI VD  ++E+EG+  L  YLTRQ + R ++TLK+AVS D MIG  G G V ITG  
Sbjct: 121 DAGIEVDAGVLEAEGRRSLAGYLTRQTKNRPYVTLKLAVSADGMIGRQGEGQVAITGPE 179


>gi|126442868|ref|YP_001062584.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           668]
 gi|126222359|gb|ABN85864.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           668]
          Length = 401

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 95/376 (25%), Positives = 148/376 (39%), Gaps = 46/376 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M+ ALR +   +  T  NP V C+I +    +G G     G PHAEV AL E
Sbjct: 4   FSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALRE 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE ARGATAYVTLEPC+H+GR+PPCA  ++  G+ RVV+   DP  +V+GRG   L+  
Sbjct: 64  AGERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADA 123

Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD--NMIGMAGCGSVPITGFIS 179
           GI+V+  ++ ++ +     + +R    R      + +  D    +  A   ++      +
Sbjct: 124 GIVVEQGLLAAQARELNIGFFSRIERGRPWTRATLGLPIDAPPALDSAELAALDAALSEA 183

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           ++ +   RA+S  +L       A D     R  G    +P  ++          +     
Sbjct: 184 RDDLRHWRARSSVVL-----ERAPD---AGRAVGCNAAAPRYVVSARDCAALGAASAACA 235

Query: 240 ALLA-PVIIVTENDDPVLALAF-------------------------RKKNINIIYCDCR 273
                P + +  +D+   A                            R            
Sbjct: 236 PADGVPTLALHRDDNSASACEDAHGIGHRARRVDRVDRVDRVDHADARPAGAPSASASDT 295

Query: 274 D----LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
           D    L      L  +GV  LLV+   A+  +   S L D ++LY            +P+
Sbjct: 296 DAGLPLPDAFARLARQGVNELLVDADLALCDALFGSDLADELLLYAHP-----ARRDAPV 350

Query: 330 EEGYLEKNFMCVRRDY 345
               L      V R +
Sbjct: 351 SASRLAAAIDDVARRW 366


>gi|319957427|ref|YP_004168690.1| riboflavin biosynthesis protein ribd [Nitratifractor salsuginis DSM
           16511]
 gi|319419831|gb|ADV46941.1| riboflavin biosynthesis protein RibD [Nitratifractor salsuginis DSM
           16511]
          Length = 336

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 93/378 (24%), Positives = 148/378 (39%), Gaps = 75/378 (19%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   D  +M  AL  +  + GLT  NP+V C +VK+G ++        G  HAE+ A+  
Sbjct: 1   MKIDDRFYMQLALGEAWRYQGLTYPNPAVGCCVVKEGRILAVEAHHKAGESHAELWAMLA 60

Query: 63  AGEEA---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIEC 95
           A E                             RG + YVTLEPC+H+GR+P CA  +   
Sbjct: 61  AYEALEGREAAVDSADADAVYDFLQTVPEELFRGVSLYVTLEPCAHHGRTPSCAWALSRF 120

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITL 154
            + RVVV   DP     G GL+ L+  GI +   + E E +  L  +L  Q      +  
Sbjct: 121 PLHRVVVATADPIPGHGG-GLEILADHGIEVATGVCEEEARELLEPFLIWQERAF--VLF 177

Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214
           K+A + +  I     G   ++   S   VH LRA  D +L+G  TV  D P L CR    
Sbjct: 178 KLAQTTNGRI-----GGGYLSSPESLEHVHRLRAVVDELLIGGSTVRTDRPTLDCRFVD- 231

Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274
           Q+ +P   I     +      +   +     + +T++ +P+L                  
Sbjct: 232 QKRAPNVCIYSRQNEFDRSIPLFGVSDRQ--VRITDDIEPLLDRPSF------------- 276

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
                          LLVEGG  +  +      +D ++LY++  +        PL    +
Sbjct: 277 ---------------LLVEGGEGMLKAL--QDRIDWLLLYQTPKL-----SAHPLSYN-V 313

Query: 335 EKNFMCVRRDYFGSDVCL 352
           ++    +     G D+ L
Sbjct: 314 DQKLKYLHHASIGVDLIL 331


>gi|261884015|ref|ZP_06008054.1| riboflavin biosynthesis protein
           (diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Campylobacter fetus subsp. venerealis str. Azul-94]
          Length = 213

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 5/176 (2%)

Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS 218
           + D  I      S  IT   ++  VH+LR +  AI+VG+ TV+AD+PELT R+      +
Sbjct: 3   TLDGKIATYTGDSKWITSPEARYDVHVLRNEHMAIMVGVNTVVADNPELTTRIP--NGRN 60

Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDL 275
           P+RII+D   ++ +DSK++   L   +I  + N D         K + +         D 
Sbjct: 61  PIRIIMDSTLRIPIDSKVVTDGLAETLIFTSVNYDVEKRKVLESKGVKVFPTTGTVHTDP 120

Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             +  +L  + ++S+L+EGG ++  +F+ +RLVD  + Y +  +IG    P+    
Sbjct: 121 HDVARLLGEQNISSVLIEGGGSIHSAFLENRLVDKGVHYFAPKLIGGQFAPTFFRG 176


>gi|315499926|ref|YP_004088729.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Asticcacaulis
           excentricus CB 48]
 gi|315417938|gb|ADU14578.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Asticcacaulis
           excentricus CB 48]
          Length = 216

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 103/213 (48%), Gaps = 5/213 (2%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             R  +TLK+A + D  I      S  ITG  ++  VH LRA  DA+LVGI TVL DDPE
Sbjct: 1   MIRPFVTLKLATTLDGRIATHTGESRWITGEPARRAVHELRASHDAVLVGIETVLKDDPE 60

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND-DPVLALAFRKKNI 265
           LT RL G + + P R++LD   ++ L SK+++TA + P  +VT +D +P L     +   
Sbjct: 61  LTVRLQGYEGYQPARVVLDTRGRIPLHSKLVQTARVIPTYVVTTHDLNPELVSLGVRPLK 120

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
                   DL   L  L   G+  L VEGG  +A +F+    VD +  +R+  ++G  G 
Sbjct: 121 VASRHQRVDLIAALEALNEAGIDRLFVEGGGQIATAFVKLGAVDRLEWFRAPTILGGDGR 180

Query: 326 PSPLEEGYLEKN----FMCVRRDYFGSDVCLEY 354
                    + N    F  V     G D+   Y
Sbjct: 181 AVIGFLDIADINRVIRFTRVGVQAVGDDLWESY 213


>gi|254166543|ref|ZP_04873397.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
           [Aciduliprofundum boonei T469]
 gi|289596093|ref|YP_003482789.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Aciduliprofundum boonei T469]
 gi|197624153|gb|EDY36714.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
           [Aciduliprofundum boonei T469]
 gi|289533880|gb|ADD08227.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Aciduliprofundum boonei T469]
          Length = 217

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 68/218 (31%), Positives = 107/218 (49%), Gaps = 12/218 (5%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             R  + +  A+S D  I + G   + I+      +VH +RA  DAILVGI T+L DDP+
Sbjct: 1   MDRPKVIINAAMSVDGKIALVGGKRIKISDEEDFKRVHKMRASVDAILVGINTILKDDPK 60

Query: 207 LTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
           LT +        +P+R++LD   ++  +++++    +A  II T  +  +  L      I
Sbjct: 61  LTVKEKYVANAKNPVRVVLDSKLRIPKNARVLN--SIAKTIIATTENAKIRELN---AEI 115

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
            I   D  DLK LL  L  RG+ S++VEGG  V  SF+   LVD + ++   +VIG GG 
Sbjct: 116 VICGKDKVDLKCLLNELWKRGIKSVMVEGGGTVISSFLRENLVDELNVFVGSLVIG-GGA 174

Query: 326 PSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
           PS +E    +          +     GS + L Y  ++
Sbjct: 175 PSLVEGIGAKNENEVIRLKFLECKPLGSGILLRYGVRD 212


>gi|114793489|pdb|2AZN|A Chain A, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)-
           Pyrimidinone 5-Phosphate Reductase
 gi|114793490|pdb|2AZN|B Chain B, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)-
           Pyrimidinone 5-Phosphate Reductase
 gi|114793491|pdb|2AZN|C Chain C, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)-
           Pyrimidinone 5-Phosphate Reductase
 gi|114793492|pdb|2AZN|D Chain D, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)-
           Pyrimidinone 5-Phosphate Reductase
 gi|114793493|pdb|2AZN|E Chain E, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)-
           Pyrimidinone 5-Phosphate Reductase
 gi|114793494|pdb|2AZN|F Chain F, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)-
           Pyrimidinone 5-Phosphate Reductase
          Length = 219

 Score =  185 bits (470), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 57/216 (26%), Positives = 96/216 (44%), Gaps = 15/216 (6%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            +I   +  + D  +      S  I+      +VH +RA  D I VGIGTVL DDP LT 
Sbjct: 4   PYIISNVGXTLDGKLATINNDSR-ISCEEDLIRVHKIRANVDGIXVGIGTVLKDDPRLTV 62

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND----DPVLALAFRKKNI 265
                 + +P+RI++D   ++ L+++++     A  II T  D                +
Sbjct: 63  H-KIKSDRNPVRIVVDSKLRVPLNARVLN--KDAKTIIATTEDTNEEKEKKIKILEDXGV 119

Query: 266 NIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            ++ C     DLKKL  IL  +G+ S+L+EGG  +        LVD + +Y +  + G  
Sbjct: 120 EVVKCGRGKVDLKKLXDILYDKGIKSILLEGGGTLNWGXFKEGLVDEVSVYIAPKIFGGK 179

Query: 324 GIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEY 354
             P+ ++    +    CV+ +       G  + LE+
Sbjct: 180 EAPTYVDGEGFKTVDECVKLELKNFYRLGEGIVLEF 215


>gi|222628465|gb|EEE60597.1| hypothetical protein OsJ_13992 [Oryza sativa Japonica Group]
          Length = 739

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 18/289 (6%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D  ++   +  +R   G TS NP V C++V+ G V+G G     G PHAEV AL +A 
Sbjct: 2   DDDGVYIRWCVELARKAAGHTSPNPMVGCVVVRGGRVVGEGFHPEAGQPHAEVFALRDAR 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           + A  ATAYV+LEPC+HYGR+PPC + +I   ++ VVV + DP+  V+ +G++ L   GI
Sbjct: 62  DLAENATAYVSLEPCNHYGRTPPCTEALINAKLKDVVVGMTDPNPIVASKGIERLQSAGI 121

Query: 125 IVDRMMESE--GKIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISKN 181
            V   ME E   +    AY+   +  ++  TL+  +S +  ++   G G+    G+ S  
Sbjct: 122 DVRVCMEEEALCRNLNEAYIHCMLTGKAFATLRTTLSVNGVVVNQIGTGADQPGGYYS-- 179

Query: 182 QVHLLRAQSDAILV-GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
               L  + D +++ GI   +   P  T    G     P+ II+       L+ + ++  
Sbjct: 180 ---QLLKEYDGVIISGISVNMTTLP--TSHEAGA--KQPLYIIIAQGGNSQLNIQFLREE 232

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
             +  +++T  D PV     +   + ++  D   L+ +L IL  RG+  
Sbjct: 233 CASEAVVLT--DSPVTV---KPPGVEVLVLDRMSLEFILEILAQRGLCR 276


>gi|226200200|ref|ZP_03795745.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           Pakistan 9]
 gi|225927708|gb|EEH23750.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
           Pakistan 9]
          Length = 384

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 93/362 (25%), Positives = 146/362 (40%), Gaps = 40/362 (11%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M+ ALR +   +  T  NP V C+I +    +G G     G PHAEV AL EAGE ARGA
Sbjct: 1   MAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALREAGERARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129
           TAYVTLEPC+H+GR+PPCA  ++  G+ RVV+   DP  +V+GRG   L+  GI+V+  +
Sbjct: 61  TAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADAGIVVEQGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQD--NMIGMAGCGSVPITGFISKNQVHLLR 187
           + ++ +     + +R    R      + +  D    +  A   ++      +++ +   R
Sbjct: 121 LAAQARELNIGFFSRIERGRPWTRATLGLPIDAPPALDSAELAALDAALSEARDDLRHWR 180

Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA-PVI 246
           A+S  +L       A D     R  G    +P  ++          +          P +
Sbjct: 181 ARSSLVL-----ERAPD---AGRAVGCNAAAPRYVVSARDCAALGAASAACAPADGVPTL 232

Query: 247 IVTENDDPVLALAF-RKKNINIIYCDCRD----------------------LKKLLTILV 283
            +  +D+   A              D  D                      L      L 
Sbjct: 233 ALHRDDNSASACEDAHGIGHRARRVDRVDHADARPAGAPSASASDTDAGLPLPDAFARLA 292

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
            +GV  LLV+   A+  +   S L D ++LY            +P+    L      V R
Sbjct: 293 RQGVNELLVDADLALCDALFGSDLADELLLYAHP-----ARRDAPVSASRLAAAIDDVAR 347

Query: 344 DY 345
            +
Sbjct: 348 RW 349


>gi|215694535|dbj|BAG89528.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 401

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 94/204 (46%), Gaps = 6/204 (2%)

Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH 217
           ++ D  I  +   +  ++G  S+ +V  LR +SDAI+VG  TV  DDP LT R   ++ H
Sbjct: 1   MTADGKIAASSGHASWVSGKSSRGRVFELRGRSDAIIVGGNTVRLDDPRLTAR--HVKGH 58

Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277
            P+RI++     L  ++ +        ++         L      K + ++  D  + + 
Sbjct: 59  VPVRIVMSQSLNLPEEANLWNVHDAYTIVATQRGARRDLQKKLALKGVEVVEFDMLNPRD 118

Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
           +++    RG  S+L E G  +A S I++ ++  +  + +  +IG    P+P+ E  + + 
Sbjct: 119 VMSYCYDRGYLSVLWECGGTLAASAISASVIHKVYAFLAPKIIGGVNAPTPVGELGMNQM 178

Query: 338 FMCVRRDYFGSDVCLEYIGKNLCL 361
              +       DV  E I +++ +
Sbjct: 179 TQAIDLI----DVSYEQIDRDMLM 198


>gi|254168441|ref|ZP_04875285.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
           [Aciduliprofundum boonei T469]
 gi|197622496|gb|EDY35067.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
           [Aciduliprofundum boonei T469]
          Length = 217

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 107/219 (48%), Gaps = 14/219 (6%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             R  + +  A+S D  I + G   + I+      +VH +RA  DAILVGI T+L DDP+
Sbjct: 1   MDRPKVIINAAMSVDGKIALVGGKRIKISDEEDFKRVHKMRASVDAILVGINTILKDDPK 60

Query: 207 LTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
           LT +    +   +P+R++LD   ++  +++++    +A  II T  +     L      I
Sbjct: 61  LTVKEKYVVNAKNPVRVVLDSKLRIPQNARVLN--SMAKTIIATTENAK---LGELNAEI 115

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
            I   +  DL+ LL  L  RG+ S++VEGG  V  SF+   LVD + ++   +VIG G  
Sbjct: 116 VICGKNKVDLRCLLNELWKRGIKSVMVEGGGTVISSFLRENLVDELNVFVGSLVIGGGA- 174

Query: 326 PSPLEEGYLEKN------FMCVRRDYFGSDVCLEYIGKN 358
            S L EG   KN         +     GS + L Y  ++
Sbjct: 175 -SSLVEGIGAKNENEVIRLKFLECKPLGSGILLRYGVRD 212


>gi|284162163|ref|YP_003400786.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
           pyrimidine1-reductase [Archaeoglobus profundus DSM 5631]
 gi|284012160|gb|ADB58113.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
           pyrimidine1-reductase [Archaeoglobus profundus DSM 5631]
          Length = 222

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 103/218 (47%), Gaps = 13/218 (5%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
               + +A S D  I       + I+      +V  LRA+SDAI+VGIGTVL+D+P+LT 
Sbjct: 3   PFTFINVASSVDGKISNEKRIQLRISCEEDLKRVDELRAKSDAIMVGIGTVLSDNPKLTV 62

Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
                   RL   ++ +P+R+++D   ++ LD+K++       ++ V+   +       R
Sbjct: 63  KSEELRKRRLEEGRDANPIRVVVDSKCRIPLDAKVLD-ESAKTIVAVSRIANSEKVNTLR 121

Query: 262 KKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
           +  +++     D  DLK L+  L   GV  L+VEGGA +  + +   LVD I +Y   ++
Sbjct: 122 RMGVDVFVAGDDKVDLKALVEYLYKIGVRVLMVEGGATLNWAMLREGLVDEIYVYYGNMI 181

Query: 320 IGEGGIPSPLEEGYLEK--NFMCVRRDYFGSDVCLEYI 355
           IG    P+ ++    +   +   +     G  +   + 
Sbjct: 182 IGGSKAPTVVDGMSFDPPISLDLLDVRKLGRGILTRWR 219


>gi|240145210|ref|ZP_04743811.1| riboflavin biosynthesis protein RibD domain protein [Roseburia
           intestinalis L1-82]
 gi|257202673|gb|EEV00958.1| riboflavin biosynthesis protein RibD domain protein [Roseburia
           intestinalis L1-82]
          Length = 222

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 91/186 (48%), Gaps = 11/186 (5%)

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
              ++ QVH +R +   I+VG GTV+ADDP L CRL   Q   P+RI+ D   ++ L S+
Sbjct: 32  REAAREQVHRMRHEMTGIMVGAGTVIADDPMLNCRLP--QTKDPVRIVCDTTLRIPLKSR 89

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLL 291
           I++TA     II T   D      ++K    II  +      DLK+L+  L   G+ S+L
Sbjct: 90  IVQTAEEQNTIIATCCQDEAKIREYQKYGCRIIVTEHADGKVDLKELMRQLGADGIESVL 149

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYF 346
           +EGGA +  S + + +V+ +  Y +  + G     SP+    ++        +  R    
Sbjct: 150 LEGGAMLNWSALEAGIVNEVYAYVAPKLFGGADAKSPVAGIGVDYPDDAYCLVSQRVQQV 209

Query: 347 GSDVCL 352
           G D+ +
Sbjct: 210 GEDILI 215


>gi|21672710|ref|NP_660777.1| riboflavin biosynthesis protein RibD [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25091139|sp|Q8K9A4|RIBD1_BUCAP RecName: Full=Diaminohydroxyphosphoribosylamino-pyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase
 gi|21623353|gb|AAM67988.1| riboflavin biosynthesis protein RibD [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 147

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 56/145 (38%), Positives = 91/145 (62%), Gaps = 1/145 (0%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+ A++ S+     TS NP+V C+IV++  ++G G     G  HAE+ AL  AGE+
Sbjct: 3   DRFYMTRAIKLSKLGEFTTSPNPNVGCVIVQNKKIVGEGWHKKYGENHAEINALNMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+G+TAY+TLEPC+H+G++PPC   II+ GI+ V++   DP+ +VSG+G+ +L +KGI +
Sbjct: 63  AKGSTAYITLEPCNHFGKTPPCCDAIIQSGIKNVIISSLDPNPKVSGKGVLYLRKKGISV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRS 150
              +M  E + +   +  R      
Sbjct: 123 KIGLMSKESQKYNKGFFKRMRTGLP 147


>gi|20139385|sp|P57533|RIBD1_BUCAI RecName: Full=Diaminohydroxyphosphoribosylamino-pyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase
          Length = 147

 Score =  182 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 57/145 (39%), Positives = 87/145 (60%), Gaps = 1/145 (0%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  A+  S+     T+ NP+V C+IVK+ I++G G     G  HAE+ AL  AGE+
Sbjct: 3   DIFYMKRAIELSKLGEFTTAPNPNVGCVIVKNNIIVGEGWHEQAGKNHAEINALIMAGEK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+G TAYVTLEPC+H+G++PPC   +I+ GI RVV+   DP+ ++SG G+ +L + GI +
Sbjct: 63  AQGGTAYVTLEPCNHFGKTPPCCNALIKSGINRVVISNIDPNPKISGNGILYLKKHGICV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRS 150
              ++  E K +   +  R      
Sbjct: 123 KTGLLSKESKQYNKGFFKRMKTGFP 147


>gi|20093538|ref|NP_613385.1| pyrimidine reductase [Methanopyrus kandleri AV19]
 gi|19886379|gb|AAM01315.1| Pyrimidine reductase [Methanopyrus kandleri AV19]
          Length = 235

 Score =  182 bits (462), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 60/217 (27%), Positives = 103/217 (47%), Gaps = 12/217 (5%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             R  +   + ++ D  +  A   S  I+G     +VH LRA+ DA+ VGI TV  DDP 
Sbjct: 1   MPRPKVLYNVGMTADGKVVTAAGDSR-ISGEEDLKEVHRLRAEHDAVAVGINTVRKDDPM 59

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
           L  RL  ++   P+R++ D    + LD ++++TA   P +++    DP       K+ + 
Sbjct: 60  LNVRL--VEGEDPIRVVFDTECSIPLDCRLVRTARDIPTVVLCAEADPGRVEKLEKRGVK 117

Query: 267 IIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
           +       D  D+++ L +L   GV +LL+EGG  +A SF+   L+D   +  + +++G 
Sbjct: 118 VEEVGACEDGVDVERGLELLYDMGVRTLLLEGGPTLAWSFLKRGLIDEFRVAVAPVLVGG 177

Query: 323 GGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354
               +P+E     +          R +  G DV L Y
Sbjct: 178 SDALTPVEGEGFPRVDLGVGLELKRVERVGRDVVLWY 214


>gi|15678263|ref|NP_275378.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|6225947|sp|O26337|RIB7_METTH RecName: Full=Putative 5-amino-6-(5-phosphoribosylamino)uracil
           reductase; AltName: Full=HTP reductase
 gi|2621283|gb|AAB84741.1| riboflavin-specific deaminase [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 216

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 60/216 (27%), Positives = 107/216 (49%), Gaps = 11/216 (5%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++ L  A++ D  I  A   S  I+G     +VH LR + DAI+VGI TVLADDP LT 
Sbjct: 3   PYVILNAAMTLDGKIATATGSS-EISGEEDLRRVHELRRECDAIMVGINTVLADDPRLTV 61

Query: 210 -RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
            R++     +P+R+++D   +     +++     AP +I      P   +A  +K   ++
Sbjct: 62  HRVDAAPGDNPVRVVVDSMARTPPHFRVLNDE--APTVIGVSESAPPERVAELRKRAEVV 119

Query: 269 YCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
               R  DL  LL  L G G+  L++EGG+ + +S +   LVD + +  + +++G     
Sbjct: 120 VAGTRRVDLHLLLERLHGMGIERLMLEGGSTLNYSMLTGGLVDEVRVCIAPMIVGGRDAR 179

Query: 327 SPLEEGYLEKNFMCVRRDY-----FGSDVCLEYIGK 357
           + ++   +++    +R +       G D+ +EY  K
Sbjct: 180 TLVDGEGIDEMADAIRLELKRSYTLGEDLIVEYTVK 215


>gi|303244611|ref|ZP_07330944.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanothermococcus okinawensis IH1]
 gi|302485037|gb|EFL47968.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanothermococcus okinawensis IH1]
          Length = 225

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 57/217 (26%), Positives = 102/217 (47%), Gaps = 14/217 (6%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++   + +S D  +      S  I+G     +VH +R   D I+VGIGT+L DDP LT 
Sbjct: 7   PYVISNVGMSLDGKLATIDNDSR-ISGEEDLKRVHNIRKNVDGIMVGIGTILKDDPRLTV 65

Query: 210 RLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK----KN 264
                +   +P+RI++D + ++ L+++++       +I  T  D P       K    +N
Sbjct: 66  HKIDAKIGDNPIRIVIDSNLRIPLNARVLNKD-AKTIIATTLKDTPNKIEKINKLKDMEN 124

Query: 265 INIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
           + II    +  +LKKL+ IL  +G+  +L+EGG  +        LVD + +Y +  + G 
Sbjct: 125 VEIIRTGIEKVNLKKLMEILYKKGIKKILLEGGGTLNWGMFKENLVDEVSVYVAPKIFGG 184

Query: 323 GGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEY 354
            G P+ ++    +    CV+        F   + LE+
Sbjct: 185 VGAPTYVDGEGFKTVDECVKLKLEKYYPFDEGIVLEF 221


>gi|159905708|ref|YP_001549370.1| bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Methanococcus maripaludis C6]
 gi|159887201|gb|ABX02138.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanococcus maripaludis C6]
          Length = 360

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 61/300 (20%), Positives = 125/300 (41%), Gaps = 35/300 (11%)

Query: 88  CAQFIIECGIRRVVVCVDDPDVR--VSGRGLQWLSQKGIIVDRMMESEGKIF-------- 137
            A  +I   I  V++  D        +   ++    +GI V+ ++  E   +        
Sbjct: 58  IADDLIARNISEVILLTDFDRAGRVYAKNIMEEFQSRGIKVNNLIRKEIIKYSRGDLKDI 117

Query: 138 --LHAYLTRQVEKR--------SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
             L+ Y++R++            ++   + ++ D  +      S  I+G     +VH +R
Sbjct: 118 ESLYPYISRRININSDLSDIMLPYVISNVGMTLDGKLATIENDSR-ISGENDLKRVHEIR 176

Query: 188 AQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
              DAI+VGIGTVL DDP LT   +N   + +P+RI++D + K+ L+++++     A  +
Sbjct: 177 KDVDAIMVGIGTVLKDDPRLTVHKINASPKDNPLRIVIDSNLKIPLNARVLNND--AKTV 234

Query: 247 IVT------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
           I T      E ++ +  L      +        DL+K++  +   G+  +L+EGG  +  
Sbjct: 235 IATTTPISYEKEEKIRKLKEMGIMVLRAGVQKVDLRKIMNEIYKMGINKILLEGGGTLNW 294

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYI 355
                 L++ + +Y +  + G    P+ ++    +           +       + LEY 
Sbjct: 295 GMFKENLINEVRVYIAPKIFGGSNSPTYVDGEGFKNVEECTKLELKKYYPLDDGIVLEYR 354


>gi|329114509|ref|ZP_08243268.1| Riboflavin biosynthesis protein RibD [Acetobacter pomorum DM001]
 gi|326695989|gb|EGE47671.1| Riboflavin biosynthesis protein RibD [Acetobacter pomorum DM001]
          Length = 350

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 81/309 (26%), Positives = 122/309 (39%), Gaps = 37/309 (11%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA---GEEAR 68
            A+  +   VG T+ NP V C+++   G V+        G  HAE  A+E+A   G   R
Sbjct: 22  LAVAEAWSFVGRTAPNPPVGCVLLDAQGDVLVVAAHHQAGTAHAERLAVEQARALGLVER 81

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
             TA VTLEPC+H GR+PPC + ++   ++   +   DP+  V G G   L  +GI V+R
Sbjct: 82  IDTAVVTLEPCNHTGRTPPCTEALLSTPVKTAWIGCADPNPHVQGGGAARLEHEGITVNR 141

Query: 129 MME--------SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           + +        +  +  L  +  R    R  IT+K A+     +          T   S 
Sbjct: 142 LWQCMNAAGTYARCRALLAPFAWRMTHGRPWITVKQALDSKGSMVPPQGQKT-FTTPASL 200

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              H LR  +D I+ G GTVLAD P LT R                         +    
Sbjct: 201 RLAHALRRVTDGIVTGTGTVLADRPTLTVR------------------------HVEDHP 236

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
               +++V   +    A      +       C D+ +L  IL       +LVE G  +  
Sbjct: 237 ERRRLLVVCGQEKHAPAEWLASVSAAFDVSFCPDIAQLPYILAQSDALWVLVEAGPTLLE 296

Query: 301 SFINSRLVD 309
           +     L D
Sbjct: 297 ALKTHNLWD 305


>gi|297618676|ref|YP_003706781.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanococcus voltae A3]
 gi|297377653|gb|ADI35808.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanococcus voltae A3]
          Length = 235

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 58/233 (24%), Positives = 103/233 (44%), Gaps = 22/233 (9%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++   + ++ D  +         I+G     +VH +R   DAI+VGIGTVL D+P+LT 
Sbjct: 3   PYVISNVGMTLDGKLSTVEND-TRISGENDLKRVHQIRKDVDAIMVGIGTVLKDNPKLTI 61

Query: 210 R-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT------ENDDPVLALAFRK 262
             +      +P+RI++D + ++ LDS+++     A  +I T      E  + +  +   K
Sbjct: 62  HKIPLENNKNPVRIVVDSNLRIPLDSRVLNED--AKTVIATTEYGSLEQSEKIKRIEKIK 119

Query: 263 K-----NINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
           +     N+ IIY      DL+ L+  L    + S+L+EGG  +        LVD + +Y 
Sbjct: 120 ELESIENVEIIYSGNLKVDLELLMGKLSKMDIKSILLEGGGTLNWGMFEKNLVDEVRVYV 179

Query: 316 SQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKNLCLQE 363
           +  + G    P+ ++    +      N   +        + LEY  K    QE
Sbjct: 180 APKIFGGSNAPTYVDGDGFKTLEDCVNLELIDYYQMDEGIVLEYFIKKDNNQE 232


>gi|163845756|ref|YP_001633800.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222523464|ref|YP_002567934.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chloroflexus sp.
           Y-400-fl]
 gi|163667045|gb|ABY33411.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222447343|gb|ACM51609.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chloroflexus sp.
           Y-400-fl]
          Length = 221

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 67/218 (30%), Positives = 105/218 (48%), Gaps = 15/218 (6%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             R  +TL  A + D  +      S  I+G  S    H LRA SDAI+VG+GTVL DDP 
Sbjct: 1   MMRPRVTLCFAQTLDGRVAAVDGSSQWISGPESLRFCHHLRANSDAIMVGVGTVLRDDPR 60

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP-VLALAFRKKNI 265
           LT RL  +    P+R+I+D H +    + +I+       ++      P    +A ++   
Sbjct: 61  LTTRL--VAGPDPLRVIVDTHLRTPTTAAVIRDGAGTGTLLACTAAAPLERRIALQECGA 118

Query: 266 NIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
            ++          DL  LLT L  RGV S++VEGGA +  S + + LVD++ +  + I++
Sbjct: 119 TVLTMPEAAGGGVDLAALLTALGERGVASVMVEGGARLITSLLRANLVDALAVTIAPIIL 178

Query: 321 GEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE 353
           G G  PS + +  +           V    +G+DV +E
Sbjct: 179 GSG--PSAIGDLGILTLNQALRLTNVTWTTYGADVVIE 214


>gi|239917588|ref|YP_002957146.1| riboflavin biosynthesis protein RibD [Micrococcus luteus NCTC 2665]
 gi|281413925|ref|ZP_06245667.1| riboflavin biosynthesis protein RibD [Micrococcus luteus NCTC 2665]
 gi|239838795|gb|ACS30592.1| riboflavin biosynthesis protein RibD [Micrococcus luteus NCTC 2665]
          Length = 377

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 88/329 (26%), Positives = 138/329 (41%), Gaps = 34/329 (10%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEAR- 68
           M  A+  +    G+   NP V  ++  + G V+  G     G  HAEV AL         
Sbjct: 12  MDLAVHAALR--GVRGANPLVGAVLTDEAGRVLAVGHHRGRGTAHAEVDALARWRAARAA 69

Query: 69  ----------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                     G T +VTLEPC H G + PC+Q +++  I  +   V DP     G   + 
Sbjct: 70  DPALAALDPAGLTLHVTLEPCDHTGSTGPCSQAVLDAEIGALRYAVADPTGHDGGGAARL 129

Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
            +    +     E+        +   +   R  +T  +A S D     A   S  ITG  
Sbjct: 130 AAHGVHVTGPTGETAALTLTARWREVRDAGRPWVTGHLAQSLDGHAAAADGTSQWITGPD 189

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSKI 236
           S+   H +R++ DAI+VG GTVLADDP LT R     E  H P+ ++     +   D   
Sbjct: 190 SRVHAHKVRSRVDAIVVGTGTVLADDPRLTARDAVGAELAHQPVPVV--QGHRPVPDGAA 247

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
           ++T    PV++   + DP   LA    +                   GR    +L+EGG 
Sbjct: 248 LRT---HPVVLEVLDHDPHAVLAALAAHPGPWP-------------HGRRAEHVLIEGGP 291

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGI 325
            V  +++ + LVD +++Y + +++G G  
Sbjct: 292 RVLGAWLRAGLVDELMVYTAPLLLGPGRA 320


>gi|304314445|ref|YP_003849592.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302587904|gb|ADL58279.1| predicted 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 216

 Score =  179 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 56/216 (25%), Positives = 105/216 (48%), Gaps = 11/216 (5%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++ L  A++ D  I      S  I+G     +VH LR + DAI+VGI TVLADDP LT 
Sbjct: 3   PYVILNAAMTLDGKIATKTGSS-EISGEEDLRRVHELRRECDAIMVGINTVLADDPRLTV 61

Query: 210 -RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
            R++  +  +P+R+++D   +  L+ +++     AP +I      P   +   +K   ++
Sbjct: 62  HRVDAEEGDNPVRVVVDSRARTPLNFRVLNDE--APTVIGVSESAPASRVNELRKRAEVV 119

Query: 269 YC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
               +  +L  LL  L   GV  L++EGG+ + +S +   LVD + +  + ++ G     
Sbjct: 120 VAGKERVNLCLLLERLHEMGVRRLMLEGGSTLNYSMLTEGLVDEVRVCIAPMIAGGREAR 179

Query: 327 SPLEEGYLEKNFMCVRRDY-----FGSDVCLEYIGK 357
           + ++   ++     ++ +       G D+ +EY  K
Sbjct: 180 TLVDGEGIDDMSDAIKLELERFYTLGEDLIVEYTVK 215


>gi|299115418|emb|CBN75583.1| riboflavin biosynthesis protein [Ectocarpus siliculosus]
          Length = 541

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 94/374 (25%), Positives = 153/374 (40%), Gaps = 82/374 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA 63
             D   M  AL  +   +G T  NP+V C+I+ K+G V+G G     G PHAEV A+ +A
Sbjct: 68  EVDGAHMRRALELAAKGLGHTRPNPAVGCVILDKEGSVVGEGFHPRAGEPHAEVWAIRQA 127

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           GE ARG TAYV+LEPC+H+GR+PPC   ++ECG+ RVV  + DPD R +G GL+ L+  G
Sbjct: 128 GERARGGTAYVSLEPCNHFGRTPPCTTALLECGVARVVAGMVDPDPRTAGSGLRRLADAG 187

Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           I +   +  +       A++ R   K  +  L           + G  S  I    S+  
Sbjct: 188 IDVSVGVEGAACHALNSAFVHRVSHKSCYGVLHC--------CLDGACSRSIPQSGSRAG 239

Query: 183 VHLLRA-----------------QSDAILV----GIGTVLADDPELTCRLNGLQEHSPMR 221
           V  L+                  + DAI+V    G+  + A +  L          + +R
Sbjct: 240 VGGLQDTARENDLAVPPGGRNFEEYDAIVVEGRSGVAKLEACNSAL--------PPTALR 291

Query: 222 IIL-----DPHFKLS----LDSKIIKTALLAPVII--VTENDDPV------LALAFRKKN 264
           +++     D   ++     L+S++++ +    V+    T   D        +  +   + 
Sbjct: 292 VVIVGAGSDEGLEIELAGVLESRLLEESPERTVVFMPATAGQDGDGSLTGSVRASLMSRG 351

Query: 265 INIIYCDCRD--------------------------LKKLLTILVGRGVTSLLVEGGAAV 298
           I ++     D                             +   L  RG+ S   E G A+
Sbjct: 352 IAVVDFRTPDTPTPPASSLDEERPETATAAATMAAAAGAVSRELFRRGMLSAAWEVGPAM 411

Query: 299 AHSFINSRLVDSII 312
           A   + +  V   +
Sbjct: 412 AAVVLRAGHVQRAL 425


>gi|150399410|ref|YP_001323177.1| bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Methanococcus vannielii SB]
 gi|150012113|gb|ABR54565.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanococcus vannielii SB]
          Length = 357

 Score =  178 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 61/300 (20%), Positives = 115/300 (38%), Gaps = 35/300 (11%)

Query: 88  CAQFIIECGIRRVVVCVDDPDVRV--SGRGLQWLSQKGIIVDRMMESE------------ 133
            A  + + GI  V++  D        +   L     +GI V+ ++ +E            
Sbjct: 58  IADTLKKEGILEVILLTDFDKAGKKYAREILSEFQNRGIKVNNILRNELLKYSRGDLKDI 117

Query: 134 ------GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
                     +            H+   + ++ D  +      S  I+      +VH LR
Sbjct: 118 ESIYAYISRRVDIMPNFDDMLLPHVISNVGMTLDGKLATVSNDSR-ISSENDLKRVHELR 176

Query: 188 AQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
            + D ILVGIGT+L DDP LT   +  + + +P+RI++D   ++ + ++++ +   A  I
Sbjct: 177 KEVDGILVGIGTILKDDPRLTVHKVPAVPKENPIRIVVDSSLRIPMTARVLNSD--AKTI 234

Query: 247 IVT------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
           I T      E D+ +  L      +        +LK L+  L  +G+  +L+EGG  +  
Sbjct: 235 IATTKPSSNEKDEKIRKLISMGVTVIQTGAKKVNLKDLMNELYKQGIKKILLEGGGTLNF 294

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYI 355
                 L+  I +Y +  + G    P+ ++    +                   + LEYI
Sbjct: 295 GMFKENLISEIRVYVAPKIFGGSNAPTYVDGEGFKTVEDSPKLELKNHYILDDGIILEYI 354


>gi|259506813|ref|ZP_05749713.1| riboflavin biosynthesis protein RibD [Corynebacterium efficiens
           YS-314]
 gi|259165599|gb|EEW50153.1| riboflavin biosynthesis protein RibD [Corynebacterium efficiens
           YS-314]
          Length = 254

 Score =  178 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 76/285 (26%), Positives = 116/285 (40%), Gaps = 36/285 (12%)

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
           PC+H GR+ PC+Q +I+ GI RV     DP  + +G G   L Q G+    +        
Sbjct: 1   PCNHTGRTGPCSQALIDAGIARVFYANPDPFPQAAG-GADHLRQAGVDTHLLGLP--VPT 57

Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
           L  +L      R HITLK A + D         S  ITG  ++  VH  R + DAI+VG 
Sbjct: 58  LSPWLRATKLGRPHITLKFAGTLDGFAAATDGTSQWITGETARAHVHADRTRRDAIIVGT 117

Query: 198 GTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
           GT L D+P LT R   GL +H P R+++     +   S + +                  
Sbjct: 118 GTALTDNPSLTARGPAGLYDHQPRRVVIGRRP-VPAGSNLDRLGFE-------------- 162

Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
                             + + L  L   G   +L+EGG  +A + + + L+D+I  Y +
Sbjct: 163 --------------QYPGIDEALAALWESGCRDVLLEGGPTLAGAMLRAGLIDAIRAYVA 208

Query: 317 QIVIGEGGIPSPLEEGYLEK---NFMCVRRDYFGSDVCLEYIGKN 358
             ++G G      + G        F        G DV ++   K+
Sbjct: 209 PAILGAGRSVLSWDGGTTISDITRFTTTAVHRLGDDVLIDMTRKD 253


>gi|11499589|ref|NP_070831.1| riboflavin-specific deaminase (ribG) [Archaeoglobus fulgidus DSM
           4304]
 gi|6225946|sp|O28272|RIB7_ARCFU RecName: Full=Putative 5-amino-6-(5-phosphoribosylamino)uracil
           reductase; AltName: Full=HTP reductase
 gi|2648530|gb|AAB89247.1| riboflavin-specific deaminase (ribG) [Archaeoglobus fulgidus DSM
           4304]
          Length = 219

 Score =  178 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 94/207 (45%), Gaps = 8/207 (3%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++ + +A S D  I       + I+       V  LRA+SDAI+VGIGTVLADDP LT 
Sbjct: 3   PYVFVNVAASLDGKISDESRKQLRISCEEDLRIVDRLRAESDAIMVGIGTVLADDPRLTV 62

Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
                   R    +E +P+R+++D   ++ L ++I+       V +     +  +    +
Sbjct: 63  KSAELREKRQKDGKEPNPLRVVVDSRCRVPLTARILNDEARTLVAVSRIAPEEKVREVKK 122

Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
              + +   +  +L  LL  L  +GV  L+VEGG  +  S I+  LVD I +Y   I IG
Sbjct: 123 VAEVAVFGEERVELSALLEFLHRKGVRRLMVEGGGTLISSLISQNLVDEIRIYYGPIFIG 182

Query: 322 EGGIPSPLEEGYLEKNFMCVRRDYFGS 348
               P+  +     K     + +  G 
Sbjct: 183 GRDSPTVCDGESFLKKCRIEKIERIGE 209


>gi|45358911|ref|NP_988468.1| bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Methanococcus maripaludis S2]
 gi|45047777|emb|CAF30904.1| Conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 360

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 62/299 (20%), Positives = 126/299 (42%), Gaps = 35/299 (11%)

Query: 88  CAQFIIECGIRRVVVCVDDPDVR--VSGRGLQWLSQKGIIVDRMMESEGKIF-------- 137
            A  +I   I  V++  D        +   ++    +GI V+ ++  E   +        
Sbjct: 58  IADDLIAKNISEVILLTDFDRAGREYAKNIMEEFQSRGIKVNNLIRKEILKYSRGDLKDI 117

Query: 138 --LHAYLTRQVEKR--------SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
             L+ Y++R++             +   + ++ D  +      S  I+G     +VH +R
Sbjct: 118 ESLYPYISRRINFNSDLSDIMLPFVISNVGMTLDGKLATIDNDSR-ISGENDLKRVHEIR 176

Query: 188 AQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
            + DAI+VGIGTVL DDP LT   +N   + +P+RI++D + K+ L ++++     A  +
Sbjct: 177 KEVDAIMVGIGTVLKDDPRLTVHKINASPKDNPLRIVVDSNLKIPLTARVLN--KDAKTV 234

Query: 247 IVTE----NDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
           I T     ++         +  I ++       DL+K++  +   G+  +L+EGG  +  
Sbjct: 235 IATTTPISDEKEEKIRKLNEMGIIVLQAGVQKVDLRKIMNEIYKMGINKILLEGGGTLNW 294

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEY 354
                 L++ + +Y +  V G    P+ ++    +    C + +          + LEY
Sbjct: 295 GMFKENLINEVRVYIAPKVFGGASSPTYVDGNGFKNVEECTKLELKNYYPLDDGIVLEY 353


>gi|78776878|ref|YP_393193.1| riboflavin biosynthesis protein RibD [Sulfurimonas denitrificans
           DSM 1251]
 gi|78497418|gb|ABB43958.1| Riboflavin biosynthesis protein RibD [Sulfurimonas denitrificans
           DSM 1251]
          Length = 336

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 76/349 (21%), Positives = 138/349 (39%), Gaps = 73/349 (20%)

Query: 6   FDA-RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA 63
            D   +M  AL  +  + GLT  NP+V C+I+ K G ++        G PHAEV+AL+ A
Sbjct: 3   IDENFYMRLALNEAWKYQGLTYPNPAVGCVIISKSGEILALEAHKRAGLPHAEVEALKSA 62

Query: 64  ---------------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                                       +  + AT Y TLEPCSH G++P CA  I +  
Sbjct: 63  YIVLSGDKKILELTESAQIHNYLLENHNDYFKDATIYTTLEPCSHIGKTPSCATLISKLN 122

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
           I++++V   D +  ++  G + ++  G+     +M+ E    L  +   Q +K       
Sbjct: 123 IKKLIVGSLDSN-EIASGGNKVVNDAGVEIKYGVMQKECDELLLPFWLWQKDKFVFFKW- 180

Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215
                  + G    G   I+   S+ +VH +R   D +++G  +V  D P L  RL  + 
Sbjct: 181 ----AQRLNGTVDGGI--ISSSKSRTKVHAMRDVCDLLVIGGNSVRVDRPTLDARL--VN 232

Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275
             +P  +I+           +                          KN +++  D  D+
Sbjct: 233 GRAPDILIVSKSDDFDKTIPLFS-----------------------VKNRDVVISDNFDI 269

Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
                    +   ++++EGG  +     +  +V+  + + S ++ G+ G
Sbjct: 270 L--------KNYKNIMIEGGGGMFE--YSKDVVNYHLTFISPLIGGDDG 308


>gi|157415842|ref|YP_001483098.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|157386806|gb|ABV53121.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|307748478|gb|ADN91748.1| Putative riboflavin specific deaminase [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315931666|gb|EFV10627.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 336

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 87/374 (23%), Positives = 155/374 (41%), Gaps = 79/374 (21%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
             +M+ AL  +  +  LT  NP+V C+I+ K+G ++        G  HAE+ A+  A + 
Sbjct: 13  EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNGKILAIKAHEKAGLAHAELNAIAHAFKS 72

Query: 67  AR-------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
            R                          + A+VTLEPCSH G++PPCA+   E G +++ 
Sbjct: 73  LRPEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 132

Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
           + V D + +++  G ++L ++GI ++  +++ EGK  L  +L  Q E+     L ++++ 
Sbjct: 133 ISVKDEN-KIASGGAEFLKKQGIEIEFDILKEEGKKLLKPFLKWQKEQFKLFKLALSMNG 191

Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
                        ++  +S+   H +RA  D ++VG  T+  D P L  RL   +  +P 
Sbjct: 192 SPF-------GKIVSNELSRTYAHKIRAVIDLLVVGGETIRKDHPILDARL--CKAKAPN 242

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
             IL      + D  I                 P+  +  R+    I             
Sbjct: 243 LCILSRQNIDNFDKNI-----------------PLFKVPNRQIYTQIPSEAKF------- 278

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
                    L+ EGG     +F +   +D  ++++S  +  E  +  PL       NF  
Sbjct: 279 ---------LMYEGGENFLKTFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKP 320

Query: 341 VRRDYFGSDVCLEY 354
           + R++ GSD    Y
Sbjct: 321 LYRNFLGSDTYGIY 334


>gi|329889480|ref|ZP_08267823.1| riboflavin biosynthesis protein ribD [Brevundimonas diminuta ATCC
           11568]
 gi|328844781|gb|EGF94345.1| riboflavin biosynthesis protein ribD [Brevundimonas diminuta ATCC
           11568]
          Length = 208

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 70/210 (33%), Positives = 101/210 (48%), Gaps = 12/210 (5%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             + LK+A S D  I  A   S  ITG  ++ Q H LRA  DAILVG+ TVLADDPELT 
Sbjct: 3   PRVILKLATSLDGRIATATGESQWITGPEARLQGHRLRATHDAILVGVETVLADDPELTV 62

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
           RL       P+R++LD   +    +K+   A    +I  T    P+         + +  
Sbjct: 63  RLPDYAGTHPLRVVLDSRLRTPATAKV---ASGNTLIFTTAQPHPIGQAEV----VAVAP 115

Query: 270 CDCRD-LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS- 327
            D R  +  +L  L  R + S+L+EGG  VA SFI +  VD+I  +R+ +++G  G P  
Sbjct: 116 NDGRPAISAVLDALAARNIGSILIEGGGRVAASFIQAGAVDAIEWFRAPMLLGGEGRPCI 175

Query: 328 ---PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
               L +      F  +  +  G D+   Y
Sbjct: 176 ASLALAKLAHAPKFRRLGVEPVGDDLWERY 205


>gi|86152320|ref|ZP_01070531.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315125029|ref|YP_004067033.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85840809|gb|EAQ58060.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315018751|gb|ADT66844.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 326

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 153/374 (40%), Gaps = 79/374 (21%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
             +M+ AL  +  +  LT  NP+V C+I+ K+G ++        G  HAE+ A+  A + 
Sbjct: 3   EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNGKILAIKAHEKAGLAHAELNAITHAFKS 62

Query: 67  AR-------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
            R                          + A+VTLEPCSH G++PPCA+   E G +++ 
Sbjct: 63  LRPEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 122

Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
           + V D + +++  G ++L ++GI +   +++ EGK  L  +L  Q  +     L ++++ 
Sbjct: 123 ISVKDEN-KIASGGAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQKRQFKLFKLALSMNG 181

Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
                        ++  +S+   H +RA  D ++VG  T+  D P L  RL   +  +P 
Sbjct: 182 SPF-------GKIVSNELSRTYAHKIRAVIDLLVVGGETIRKDHPILDARL--CKAKAPN 232

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
             IL      + D  I                 P+  +  R+    I             
Sbjct: 233 LCILSRQNIDNFDKNI-----------------PLFKVPNRQIYTQIPSEAKF------- 268

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
                    L+ EGG     +F +   +D  ++++S  +  E  +  PL       NF  
Sbjct: 269 ---------LMYEGGENFLKTFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKP 310

Query: 341 VRRDYFGSDVCLEY 354
           + R++ GSD    Y
Sbjct: 311 LYRNFLGSDTYGIY 324


>gi|84489977|ref|YP_448209.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanosphaera
           stadtmanae DSM 3091]
 gi|84373296|gb|ABC57566.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Methanosphaera stadtmanae DSM 3091]
          Length = 215

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/210 (27%), Positives = 101/210 (48%), Gaps = 6/210 (2%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++ L  A++ D  I         I+G     +VH LR + D I+VGI TVL D+P+LT 
Sbjct: 3   PYVLLNSAMTVDGKIATNNSSMK-ISGKNDLIRVHTLRKEYDGIMVGINTVLIDNPKLTI 61

Query: 210 R-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
             +N  +  +P RII+D   ++ LDSK++       VI+ ++ +   + L   K N+ I 
Sbjct: 62  HKINCKKSENPTRIIVDSSARIPLDSKVLNDDAKTIVIVSSKANKASVELLKEKCNVIIC 121

Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
                +LK  L  L   G+ S+L+EGG+ +  S    +L+D + +     ++G     + 
Sbjct: 122 GSKQVNLKLALDKLYSLGIKSILLEGGSTLNFSMFKEKLIDEVSICIGSKILGGYDSKTF 181

Query: 329 LEEGYLEK----NFMCVRRDYFGSDVCLEY 354
           ++    +K    N    + +    D+ L+Y
Sbjct: 182 VDGEGFDKNDCINLKIKKVEKIDDDILLKY 211


>gi|258542930|ref|YP_003188363.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634008|dbj|BAH99983.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637068|dbj|BAI03037.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640120|dbj|BAI06082.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643177|dbj|BAI09132.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646232|dbj|BAI12180.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649284|dbj|BAI15225.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652271|dbj|BAI18205.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655328|dbj|BAI21255.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO
           3283-12]
          Length = 350

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 85/309 (27%), Positives = 130/309 (42%), Gaps = 37/309 (11%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA---GEEAR 68
            A+  +   VG T+ NP V C+++   G V+        G  HAE  A+E+A   G   R
Sbjct: 22  LAVAEAWSFVGRTAPNPPVGCVLLDAQGDVLVVAAHHQAGTAHAERLAVEQARALGVVER 81

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
             TA VTLEPC+H GR+PPC + ++   ++ V +   DP+  V G G   L ++GI V+R
Sbjct: 82  IDTAVVTLEPCNHTGRTPPCTEALLSTPVKTVWIGCADPNPHVQGGGAARLEREGITVNR 141

Query: 129 MME--------SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           + +        +  +  L  +  R    R  +T+K A+     +          T   S 
Sbjct: 142 LWQCMNAAATYARCRALLAPFAMRMTHGRPWVTVKQALDSKGSMVPPKGQKT-FTTPASL 200

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              H LR  +D I+   GTVLAD P LT R   +++H   R +L                
Sbjct: 201 RLAHTLRRVTDGIVTATGTVLADRPTLTVR--HVEDHPERRRLL---------------- 242

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
               V+   E   P   L       ++ +C   D+ +L  IL       +LVE G  +  
Sbjct: 243 ----VVCGQEKHAPAEWLDSVSAAFDVRFCP--DIAQLPDILAQSDALWVLVEAGPTLLE 296

Query: 301 SFINSRLVD 309
           +     L D
Sbjct: 297 ALKTHNLWD 305


>gi|150402518|ref|YP_001329812.1| bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Methanococcus maripaludis C7]
 gi|150033548|gb|ABR65661.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanococcus maripaludis C7]
          Length = 360

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 64/300 (21%), Positives = 127/300 (42%), Gaps = 35/300 (11%)

Query: 88  CAQFIIECGIRRVVVCVDDPDVR--VSGRGLQWLSQKGIIVDRMMESEGKIFLH------ 139
            A  +I   I  V++  D        +   ++    +GI V+ ++  E   + H      
Sbjct: 58  IADDLIAKNIPEVILLTDFDRAGRVYAKNIMEEFQSRGIKVNNLIRKEIIKYSHGDLKDI 117

Query: 140 ----AYLTRQVEKR--------SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
                Y++R++            ++   + ++ D  +      S  I+G     +VH +R
Sbjct: 118 ESLYPYISRRITINGDLSDIMVPYVISNVGMTLDGKLATIENDSR-ISGENDLKRVHEIR 176

Query: 188 AQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
              DAILVGIGTVL DDP LT   +N   + +P+RI++D   K+SL+++++     A  +
Sbjct: 177 KDVDAILVGIGTVLKDDPRLTVHKINASPKDNPLRIVVDSSLKISLNARVLN--KDAKTV 234

Query: 247 IVTE----NDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
           I T     ++        ++  I ++       DL+K++  +   G+  +L+EGG  +  
Sbjct: 235 IATTTPISDEKEEKIRKLKEMGITVLRAGVQKVDLRKIMNEIYKMGINKILLEGGGTLNW 294

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYI 355
                 L++ + +Y +  V G    P+ ++    +    C + +          + LEY 
Sbjct: 295 GMFKENLINEVRVYIAPKVFGGANSPTYVDGEGFKNVEECTKLELKNYYPLDDGIVLEYR 354


>gi|282163718|ref|YP_003356103.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine
           reductase [Methanocella paludicola SANAE]
 gi|282156032|dbj|BAI61120.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine
           reductase [Methanocella paludicola SANAE]
          Length = 230

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 109/226 (48%), Gaps = 14/226 (6%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
            +R    +  A+S D  I       V I+G    ++V  LRA SDA++VGIGTVLADDP 
Sbjct: 1   MERPFTFINSAMSADGKISTKKRKQVKISGKTDFDRVDELRASSDAVMVGIGTVLADDPS 60

Query: 207 LTCR--------LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           LT +        ++  +E +P RI++D   ++ L + + K  +   +++V+++       
Sbjct: 61  LTVKSEERRRRRVSEGKEENPARIVVDSKARIPLTADVFKKGVGKRIVVVSKSAPSDKVE 120

Query: 259 AFRKK-NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
           A + K ++ +   +  DL  +   L  RG+  L+VEGGA +  +   + LVD I ++   
Sbjct: 121 ALKAKADVIVAGGEEVDLPVMSGELKKRGIDRLMVEGGATLNWAMTRAGLVDEISVFVGN 180

Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIGKN 358
           ++IG    P+ ++   + +    +  D          V L +  ++
Sbjct: 181 LIIGGKTAPTFMDGEGISERSEAIELDLEKCERMDEGVVLTWRVRS 226


>gi|288560264|ref|YP_003423750.1| diaminohydroxyphosphoribosylaminopyrimidine reductase RibD
           [Methanobrevibacter ruminantium M1]
 gi|288542974|gb|ADC46858.1| diaminohydroxyphosphoribosylaminopyrimidine reductase RibD
           [Methanobrevibacter ruminantium M1]
          Length = 226

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 21/223 (9%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++ L  A++ D  I      S  I+G     +VH +R + D I+VGIGTVLADDP LT 
Sbjct: 3   PYVILNAAMTLDGKIATKTGSS-EISGKEDLERVHEIRKKVDGIMVGIGTVLADDPRLTV 61

Query: 210 R-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN----------DDPVLAL 258
             +N  +E +P+RI++D   +  L+ +I+     A  II   +          ++ V   
Sbjct: 62  HKINARKEDNPIRIVVDNKARTPLNFRILNDD--AETIIAVSSICDERNENCDEEAVKRA 119

Query: 259 AFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
              +K +N+ Y   +  DL + +  L   G+ S+++EGG+ +  S I   L+D + +  +
Sbjct: 120 KELEKRVNVFYSTGETVDLVEFMEYLYDYGIKSIMLEGGSTLNFSMIRDGLIDEVKICIA 179

Query: 317 QIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEY 354
            +++G     +  +    +     V+ +       G D  +EY
Sbjct: 180 PMIVGGKDSKTFFDGDGFDYMKDAVQLELINSFPLGKDFIMEY 222


>gi|134045275|ref|YP_001096761.1| bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Methanococcus maripaludis C5]
 gi|132662900|gb|ABO34546.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanococcus maripaludis C5]
          Length = 360

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 100/218 (45%), Gaps = 15/218 (6%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++   + ++ D  +      S  I+G     +VH +R   DAI+VGIGTVL DDP LT 
Sbjct: 140 PYVISNVGMTLDGKLATIENDSR-ISGENDLKRVHEIRKDVDAIMVGIGTVLKDDPRLTV 198

Query: 210 R-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE----NDDPVLALAFRKKN 264
             +N   + +P+RI++D + K+ L+++++     A  +I T     ++        ++  
Sbjct: 199 HKINASPKDNPLRIVVDSNLKVPLNARVLN--KDAKTVIATTTPISDEKEEKIRKLKEMG 256

Query: 265 INIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
           I ++       DL+K++  +   G+  +L+EGG  +        L++ + +Y +  V G 
Sbjct: 257 IMVLQAGVQKVDLRKIMNEIYKMGINKILLEGGGTLNWGMFKENLINEVRVYIAPKVFGG 316

Query: 323 GGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYI 355
              P+ ++    +    C + +          + LEY 
Sbjct: 317 ANSPTYVDGKGFKNVEECTKLELKNYYPLDDGIVLEYR 354


>gi|319948957|ref|ZP_08023062.1| riboflavin biosynthesis protein RibD [Dietzia cinnamea P4]
 gi|319437395|gb|EFV92410.1| riboflavin biosynthesis protein RibD [Dietzia cinnamea P4]
          Length = 288

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 86/290 (29%), Positives = 127/290 (43%), Gaps = 37/290 (12%)

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
           +TLEPC H+GR+ PC    +  G+ RVV  V DP+  V+  G   L + G+ V R  + E
Sbjct: 1   MTLEPCDHHGRTGPCTARALAAGVARVVYAVSDPNP-VAAGGADTLRRAGVDVSRGDDDE 59

Query: 134 GKI----FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
            +      L A+L RQ   R  +T K A S D  +  A   S  ITG +S++  H  R +
Sbjct: 60  VRAAGDGPLRAWLHRQAHGRPFVTWKYAASLDGRVAAADGSSRWITGPVSRHHAHARRQE 119

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
            DA++VG GT+ ADDP LT RL+  +     P+R ++                   P   
Sbjct: 120 IDALVVGTGTLTADDPALTARLDDGRPAPRQPLRAVM--------------GLSAVPTGA 165

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
               DD               +   RD  + L +L    V  +LVEGG  +A +F+ + L
Sbjct: 166 AVRGDD-----------GRFRHLATRDPAEALAMLGD--VCHVLVEGGPRLAGAFLAAGL 212

Query: 308 VDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           VD +  Y + +V+G G      + +        F        G+DV L  
Sbjct: 213 VDEVDAYIAPLVLGGGRSAVEGAGVATLTDAHGFTVRETTVLGADVHLRM 262


>gi|296272024|ref|YP_003654655.1| riboflavin biosynthesis protein RibD [Arcobacter nitrofigilis DSM
           7299]
 gi|296096199|gb|ADG92149.1| riboflavin biosynthesis protein RibD [Arcobacter nitrofigilis DSM
           7299]
          Length = 335

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 80/372 (21%), Positives = 144/372 (38%), Gaps = 79/372 (21%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M  A+  +  +  LT  NP+V C++VK+G ++        G  HAEV AL+ A  
Sbjct: 4   DDKFYMKLAIDEAWKYQLLTYPNPAVGCVVVKNGEILAIEAHKEAGMSHAEVNALKAAYL 63

Query: 66  EAR---------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
           +                                 YVTLEPC+H G++P CA  + E   +
Sbjct: 64  KKHANDTLKIKKSSREIHEYLLKNHNNFFNDCEIYVTLEPCNHIGKTPSCANLLKELKPK 123

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
           RV++  +D + + +  G+Q L    I +    M+ E    L+ ++         +  K+A
Sbjct: 124 RVIIAHEDTN-KQASGGIQTLESVNIDITLDCMKKEAYDLLYPFIKWNSGTF--VFYKMA 180

Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH 217
            + +  I         ++  +++  VH LR + D +L+G  TV  D P L  R    +  
Sbjct: 181 QTLNGSIDGK------VSSTMAQLYVHTLRDKIDLMLIGGNTVRTDKPTLDARYIAGRAP 234

Query: 218 SPMRIILDPHFKL-SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276
           +   +++    K+   +  + K      +I                           DL 
Sbjct: 235 N---VMIYSKNKIFDNNIPLFKVPNREVII-------------------------SDDLF 266

Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
           KLL          ++VEG   +  + +  R +D I+L  S  +    G+ +      ++ 
Sbjct: 267 KLLDYKF------VMVEGIYNLMDA-LKER-IDYIVLLVSPKI--RKGVNAL---NEIDM 313

Query: 337 NFMCVRRDYFGS 348
           +F  V  +Y G 
Sbjct: 314 DFKIVHENYIGE 325


>gi|325294796|ref|YP_004281310.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine
           1-reductase [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065244|gb|ADY73251.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine
           1-reductase [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 220

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 100/222 (45%), Gaps = 13/222 (5%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGC----GSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
            +R ++ +   V+ D  + +A        + +    +   +H +RA+ D I+VG  T+  
Sbjct: 1   MERPYVIIVSEVTIDGKLTLAKGVSSKEIMKLMDEEANKYLHQIRAECDGIMVGANTIRI 60

Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
           D+P LT R   ++  +P RII      + LD+ I+ T +   VI V++          ++
Sbjct: 61  DNPNLTVRY--VKGKNPTRIIPVSTGDIPLDANILNTEVAPTVIAVSKKAPAEKIEKLKE 118

Query: 263 KNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
           K + +I    +  D  +L + L   G+  L+VEGG+ V    I + L+D I L    +V+
Sbjct: 119 KGVQVIVAGNEKVDFAELFSKLYEMGIRKLMVEGGSKVNWELIKNDLIDEIRLIHLPVVV 178

Query: 321 GEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIGK 357
           G   +PS +     +     K F   +    G+ +  EY  K
Sbjct: 179 GGDDVPSLVSGEGFKTLDAVKRFEIKKVFKCGNQIVTEYGRK 220


>gi|114798296|ref|YP_760756.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Hyphomonas neptunium ATCC 15444]
 gi|114738470|gb|ABI76595.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Hyphomonas neptunium ATCC 15444]
          Length = 217

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 73/215 (33%), Positives = 108/215 (50%), Gaps = 10/215 (4%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
            ITLKIA S D  I +A   S  IT   S+ + H +RA++DAI+VGIGT LADDP LT R
Sbjct: 5   RITLKIASSLDGRIALADGTSQWITSSASRARGHQMRAENDAIMVGIGTALADDPLLTAR 64

Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270
              L    P+RI+ D + +L   S++  +  L  V+ VT         A     ++I  C
Sbjct: 65  TVPLPAKQPVRIVADSNARLPTASRLASSTDLGRVVAVTAGQGSD---ALAAAGVDIWRC 121

Query: 271 DC---RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
                 D  + +      G+ +LL+EGG+ +A SF+ + LVD I  +R+ I+IG  G+P+
Sbjct: 122 GNGVRMDAGEFVRRAEAEGLRTLLIEGGSTLAASFMRAGLVDEIAWFRAPILIGGDGLPA 181

Query: 328 ----PLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
                L +      +  V  +  G DV   Y+   
Sbjct: 182 LGALGLSDLKSAARWRPVATERIGDDVLDTYVRSE 216


>gi|15617059|ref|NP_240272.1| riboflavin deaminase [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219681811|ref|YP_002468197.1| riboflavin deaminase [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|257471513|ref|ZP_05635512.1| riboflavin deaminase [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|25403627|pir||F84983 diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26)
           [imported] - Buchnera sp. (strain APS)
 gi|10039124|dbj|BAB13158.1| riboflavin deaminase [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219624654|gb|ACL30809.1| riboflavin deaminase [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
          Length = 141

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 56/141 (39%), Positives = 85/141 (60%), Gaps = 1/141 (0%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A+  S+     T+ NP+V C+IVK+ I++G G     G  HAE+ AL  AGE+A+G 
Sbjct: 1   MKRAIELSKLGEFTTAPNPNVGCVIVKNNIIVGEGWHEQAGKNHAEINALIMAGEKAQGG 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPC+H+G++PPC   +I+ GI RVV+   DP+ ++SG G+ +L + GI +   +
Sbjct: 61  TAYVTLEPCNHFGKTPPCCNALIKSGINRVVISNIDPNPKISGNGILYLKKHGICVKTGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRS 150
           +  E K +   +  R      
Sbjct: 121 LSKESKQYNKGFFKRMKTGFP 141


>gi|296537269|ref|ZP_06899158.1| riboflavin biosynthesis protein RibD [Roseomonas cervicalis ATCC
           49957]
 gi|296262404|gb|EFH09140.1| riboflavin biosynthesis protein RibD [Roseomonas cervicalis ATCC
           49957]
          Length = 225

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 93/226 (41%), Positives = 125/226 (55%), Gaps = 3/226 (1%)

Query: 45  GVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
           G TA GG PHAE +AL+ AG  ARGATAYVTLEPC H+GR+PPC   +I  G+ RVVV +
Sbjct: 1   GWTAPGGRPHAETEALKRAGAAARGATAYVTLEPCCHWGRTPPCTDALIAAGVARVVVAM 60

Query: 105 DDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163
            DPD RV G G++ L   GI +   ++E E +     +  R       +TLK+A + D  
Sbjct: 61  RDPDPRVDGGGIEQLRAAGIAVSTGLLEDEARAINAGFTKRLTRNLPLLTLKLASTLDGR 120

Query: 164 IGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII 223
           I      S  ITG  ++   H LR   DA+LVG GT LADDPEL+CR+ G      +R++
Sbjct: 121 IATRSGESQWITGAPARRLAHALRGTHDAVLVGSGTALADDPELSCRIPGFAPVPTVRVV 180

Query: 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDP-VLALAFRKKNINII 268
            D   +LS  +++++     PV I T    P  L    R     I+
Sbjct: 181 ADARLRLSPGARMLREGG-GPVWIATRPGHPDALLAPLRAAGAEIV 225


>gi|34558306|ref|NP_908121.1| putative riboflavin-specific deaminase [Wolinella succinogenes DSM
           1740]
 gi|34484025|emb|CAE11021.1| PUTATIVE RIBOFLAVIN-SPECIFIC DEAMINASE EC 3.5.4 [Wolinella
           succinogenes]
          Length = 344

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 74/341 (21%), Positives = 133/341 (39%), Gaps = 70/341 (20%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
             +M  AL+ +  + GLT  NP+V  L++ + G ++        G PHAEV AL+E    
Sbjct: 11  EFYMELALQEAWKYQGLTLPNPAVGALLLGEHGEILSIAAHQRAGSPHAEVLALQEGYAR 70

Query: 67  ARG---------------------------ATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
             G                            T YVTLEPC+HYG++PPC++ +     + 
Sbjct: 71  LSGNADILALHDSSQIHDYLLAHSQGIFRHCTLYVTLEPCNHYGQTPPCSELLARLKPKS 130

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
           V++   DP+ + +  G+  L + GI V   ++ E    L     R  ++      K A  
Sbjct: 131 VIIGKRDPNPK-ASGGIDRLKEAGIAVHTGIKEEACHKLLLPFERLQKQGYFRFFKWAQR 189

Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219
            +  +      S        +  VH LR + D +++   T  AD+P L  RL  ++  +P
Sbjct: 190 LNGTLSPGIISSSSS-----RAHVHALRDRIDLLVISGKTARADNPWLDARL--IEGRAP 242

Query: 220 MRIILDPHF-KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
             +IL     +     ++                          + + +      +L+ L
Sbjct: 243 DVLILTRSPERFPRSLRLFS---------------------VPHRRVRV----SSNLEAL 277

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
           L          ++ EGGA +  +  +S  +D+ + Y +  +
Sbjct: 278 LDY------RCVMAEGGAELFETLFDS--MDAFLSYIAPSL 310


>gi|219682366|ref|YP_002468750.1| riboflavin deaminase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|219622099|gb|ACL30255.1| riboflavin deaminase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|311086187|gb|ADP66269.1| riboflavin deaminase [Buchnera aphidicola str. LL01 (Acyrthosiphon
           pisum)]
 gi|311086763|gb|ADP66844.1| riboflavin deaminase [Buchnera aphidicola str. TLW03 (Acyrthosiphon
           pisum)]
 gi|311087351|gb|ADP67431.1| riboflavin deaminase [Buchnera aphidicola str. JF99 (Acyrthosiphon
           pisum)]
 gi|311087851|gb|ADP67930.1| riboflavin deaminase [Buchnera aphidicola str. JF98 (Acyrthosiphon
           pisum)]
          Length = 141

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 56/141 (39%), Positives = 85/141 (60%), Gaps = 1/141 (0%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A+  S+     T+ NP+V C+IVK+ I++G G     G  HAE+ AL  AGE+A+G 
Sbjct: 1   MKRAIELSKLGEFTTAPNPNVGCVIVKNNIIVGEGWHKQAGKNHAEINALIMAGEKAQGG 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
           TAYVTLEPC+H+G++PPC   +I+ GI RVV+   DP+ ++SG G+ +L + GI +   +
Sbjct: 61  TAYVTLEPCNHFGKTPPCCNALIKSGINRVVISNIDPNPKISGNGILYLKKHGICVKTGL 120

Query: 130 MESEGKIFLHAYLTRQVEKRS 150
           +  E K +   +  R      
Sbjct: 121 LSKESKQYNKGFFKRMKTGFP 141


>gi|103488468|ref|YP_618029.1| riboflavin biosynthesis protein RibD [Sphingopyxis alaskensis
           RB2256]
 gi|98978545|gb|ABF54696.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Sphingopyxis alaskensis RB2256]
          Length = 325

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 125/358 (34%), Positives = 168/358 (46%), Gaps = 52/358 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M+AA   +R     ++ NP+V CLIVK   V+ RG T  GG PH E  AL  AG  
Sbjct: 8   DTDWMAAAAGLARRGRPASAPNPNVGCLIVKADQVVARGWTQAGGRPHGEAVALAAAGVA 67

Query: 67  ARGATAYVTLEPCSH-YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           ARGATAYVTLEPC H   R P C+  +I  G+ RVVV V DPD R  G G+  L   GI 
Sbjct: 68  ARGATAYVTLEPCVHASARGPACSDLLIRAGVARVVVAVQDPDPRTDGAGIARLRAAGIE 127

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
           +   ++ ++ +  +  + TRQ   R  +TLK+A S D  I  A   S  ITG  ++   H
Sbjct: 128 VTVDVLPADARAAMAPWWTRQTMGRPFVTLKLATSLDGRIAPADGSSRWITGDRARAHGH 187

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
           L RA  +AILVG GT  AD P L  RL GL++ SP + +L               A    
Sbjct: 188 LERASHEAILVGRGTFEADAPRLDVRLPGLEDRSPKKFVLTRGA-----------APEGW 236

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
             + + +                                  GV SLLVEGGA  A +F+ 
Sbjct: 237 TAVASPDAI-------------------------------EGVDSLLVEGGAGAAAAFLA 265

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK------NFMCVRRDYFGSDVCLEYIG 356
           +  VD ++LYR+ I+IG+G   + L +  L +       +        GSD    Y  
Sbjct: 266 ADRVDRLLLYRAPILIGDG--KAALGDIGLTRIAAAHGRWRLADSRMLGSDRLDVYER 321


>gi|301055607|ref|YP_003793818.1| riboflavin biosynthesis protein contains N-terminal domain of RibD
           [Bacillus anthracis CI]
 gi|300377776|gb|ADK06680.1| riboflavin biosynthesis protein contains N-terminal domain of RibD
           [Bacillus cereus biovar anthracis str. CI]
          Length = 166

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 56/137 (40%), Positives = 84/137 (61%), Gaps = 1/137 (0%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL  AG++
Sbjct: 3   DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           A+GAT YVTLEPCSH+G++PPC + +I+  ++RVV+   D +  VSG G + L + GI +
Sbjct: 63  AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGIEV 122

Query: 126 VDRMMESEGKIFLHAYL 142
              ++E+E  +    + 
Sbjct: 123 TTGVLEAEAVLLNRYFF 139


>gi|21226928|ref|NP_632850.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanosarcina
           mazei Go1]
 gi|20905237|gb|AAM30522.1| conserved protein [Methanosarcina mazei Go1]
          Length = 228

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 99/221 (44%), Gaps = 13/221 (5%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             R  I +  A+S D  +       V I+G +   ++  LRA +DAI+VGIGTVLADDP 
Sbjct: 1   MDRPFIFINSAMSADGKLSTKERKQVKISGKLDFERMDELRAHADAIMVGIGTVLADDPS 60

Query: 207 LTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           LT         R    +  +P+R+++D   +  L++ I K      +I V+ +       
Sbjct: 61  LTVKSPERKAARKAAGKSENPVRVVVDSSARTPLNADIFKKGEGLRIIAVSNSAPEEKIR 120

Query: 259 AFRKKNINI-IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
              +K + I       DL +L   L   G+ SL+VEGGA +    +++ LVD +  +   
Sbjct: 121 MLEEKALVIKTGAFRVDLTELAAKLKEMGINSLMVEGGATLNWGMLSAGLVDEVYTFVGN 180

Query: 318 IVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEY 354
           ++IG    P+  +     +N          +     + L++
Sbjct: 181 LIIGGKTAPTFTDGEGFTENELLGLELSSAEKIEDGILLKW 221


>gi|213615891|ref|ZP_03371717.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 198

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 54/199 (27%), Positives = 86/199 (43%), Gaps = 17/199 (8%)

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMR 221
            IT   ++  V  LRAQS AIL    TVLADDP LT R   L               P+R
Sbjct: 1   WITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVR 60

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
           I++D   +++   +I++       I  T+ D      + R  ++   +    DL  L+  
Sbjct: 61  IVIDSQNRVTPAHRIVQQPGE-TWIARTQEDSHAWPDSVRTISV-PAHNGHLDLVVLMMQ 118

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKN 337
           L  + + S+ VE G  +A + + + LVD +I+Y +  ++G           LE+      
Sbjct: 119 LGRQQINSIWVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQ 178

Query: 338 FMCVRRDYFGSDVCLEYIG 356
           F      + G DVCL  + 
Sbjct: 179 FTFSEIRHVGPDVCLHMVS 197


>gi|307069511|ref|YP_003877988.1| riboflavin biosynthesis protein RibD [Candidatus Zinderia
           insecticola CARI]
 gi|306482771|gb|ADM89642.1| riboflavin biosynthesis protein RibD [Candidatus Zinderia
           insecticola CARI]
          Length = 346

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 88/318 (27%), Positives = 153/318 (48%), Gaps = 14/318 (4%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A+  S+  V  +S NPSV C I K+  ++  G T + G  HAE+ AL+   +  +  
Sbjct: 1   MLKAIYLSKKAVFFSSPNPSVGCYIKKN--IL--GYTKFKGYNHAEINALKN-IKNNKKI 55

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129
             Y+TLEPC++ G +  C +++I   I ++ +C  D +  +    ++ L  K I I   +
Sbjct: 56  NIYLTLEPCNYLGLTNSCLEYLININIYKIFICKLDNNKNIYNNSIKILKLKNIKINLGL 115

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           +    K     Y  +   K+  I LKIA S DN I +    S  IT  IS+    L R +
Sbjct: 116 LNKIYKKINKGYFYKVKNKKPLIRLKIASSIDNKICLKNKKSKWITNKISRINNQLWRIK 175

Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           S AI+ GIGT+L D+  +  R N  +      I++D   K+SL+S  +K      +II T
Sbjct: 176 SCAIITGIGTILKDNSFINIR-NFKKIKDIKNILIDTKLKISLNSNYLKNNY---IIIFT 231

Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
            + +       +K  I I          + K+++  +    +  +  E G ++ ++ I+ 
Sbjct: 232 NSKNKKKIRKLKKLGIKIFKIKLNNKKLNFKRIIEKISFLKINEIQFESGFSINNTLISL 291

Query: 306 RLVDSIILYRSQIVIGEG 323
             ++ I++Y S I++G+ 
Sbjct: 292 NKINEILIYLSPIILGKS 309


>gi|261350765|ref|ZP_05976182.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
           [Methanobrevibacter smithii DSM 2374]
 gi|288860520|gb|EFC92818.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
           [Methanobrevibacter smithii DSM 2374]
          Length = 223

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 99/219 (45%), Gaps = 17/219 (7%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++ L  A++ D  I      S  I+G     +VH LR + D I+VGI TV+AD+P LT 
Sbjct: 3   PYVILNAAMTLDGKIATKTGSSN-ISGEKDLKRVHELRREVDGIMVGINTVIADNPRLTV 61

Query: 210 R-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND--------DPVLALAF 260
             ++   E +P+R+++D   +  + ++I  T   A  II   ND        D       
Sbjct: 62  HKIDANPEDNPVRVVVDSKCRTPIAARI--TNKDAKTIIAGANDYKLDFIVSDRYANFTK 119

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
           R  +         DLK L+  L   G+ +L++EGG+ +  S I   L+D I +  +  V+
Sbjct: 120 RGIDFFFSGDKRVDLKDLMNYLYESGIKTLMLEGGSTLNFSMIKEGLIDEIRICVAPFVV 179

Query: 321 GEGGIPSPLEEGYLEKNFMCVRRDYF-----GSDVCLEY 354
           G     +  +    +     VR + F     G D+ L+Y
Sbjct: 180 GGKDSHTLFDGEGFDTMDEGVRLELFDSFKLGDDLILQY 218


>gi|148642125|ref|YP_001272638.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Methanobrevibacter smithii ATCC 35061]
 gi|222444696|ref|ZP_03607211.1| hypothetical protein METSMIALI_00309 [Methanobrevibacter smithii
           DSM 2375]
 gi|148551142|gb|ABQ86270.1| riboflavin-specific deaminase [Methanobrevibacter smithii ATCC
           35061]
 gi|222434261|gb|EEE41426.1| hypothetical protein METSMIALI_00309 [Methanobrevibacter smithii
           DSM 2375]
          Length = 223

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 99/219 (45%), Gaps = 17/219 (7%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++ L  A++ D  I      S  I+G     +VH LR + D I+VGI TV+AD+P LT 
Sbjct: 3   PYVILNAAMTLDGKIATKTGSSN-ISGEKDLKRVHELRREVDGIMVGINTVIADNPRLTV 61

Query: 210 R-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND--------DPVLALAF 260
             ++   E +P+R+++D   +  + ++I  T   A  II   ND        D       
Sbjct: 62  HKIDANPEDNPVRVVVDSKCRTPIAARI--TNKDAKTIIAGANDYKLEFIVSDRYANFTK 119

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
           R  +         DLK L+  L   G+ +L++EGG+ +  S I   L+D I +  +  V+
Sbjct: 120 RGIDFFFSGDKRVDLKDLMNYLYESGIKTLMLEGGSTLNFSMIKEGLIDEIRICVAPFVV 179

Query: 321 GEGGIPSPLEEGYLEKNFMCVRRDYF-----GSDVCLEY 354
           G     +  +    +     VR + F     G D+ L+Y
Sbjct: 180 GGKDSHTLFDGEGFDTMDEGVRLELFDSFKLGDDLILQY 218


>gi|254418857|ref|ZP_05032581.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Brevundimonas sp. BAL3]
 gi|196185034|gb|EDX80010.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Brevundimonas sp. BAL3]
          Length = 208

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 69/211 (32%), Positives = 99/211 (46%), Gaps = 8/211 (3%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             +TLK+A S D  I  A   S  ITG  ++ + H LRA  DAILVG+ TVL DDPELT 
Sbjct: 1   MRVTLKLATSLDGRIATATGESRWITGEAARLEGHRLRAGHDAILVGVETVLKDDPELTA 60

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
           RL G     P+R++LD   +    +K+   A    +I+      PV A   R+       
Sbjct: 61  RLPGRSVDQPLRVVLDSRLRTPATAKL---AGENTLILTAVEPQPVGAAQVRRVEAE-DE 116

Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP--- 326
                +  +L  L   GV S+L+EGG  VA +F+ +  VD +  +R+ I++G  G P   
Sbjct: 117 DGRPAIPAVLKALKAAGVDSVLIEGGGQVAAAFLRAGAVDRLEWFRAPILLGGEGRPCVA 176

Query: 327 -SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
              L +      F  +     G D+   Y  
Sbjct: 177 ALALAKLADAPKFRRLGVMPVGDDLWERYER 207


>gi|73668036|ref|YP_304051.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanosarcina
           barkeri str. Fusaro]
 gi|72395198|gb|AAZ69471.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Methanosarcina barkeri str. Fusaro]
          Length = 232

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 58/197 (29%), Positives = 95/197 (48%), Gaps = 9/197 (4%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             +  + +  A+S D  +       V I+G +   +V  LRAQ+DA++VGIGTVL+DDP 
Sbjct: 1   MDKPFVFINSAMSADGKLSTKERKQVRISGKLDFERVDELRAQADAVMVGIGTVLSDDPS 60

Query: 207 LTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           LT         R    +  +P+RII+D   +  LD+ I K      +I V+ +       
Sbjct: 61  LTVKSPKRKAARKAAGKNENPVRIIVDSSARTPLDADIFKKGDGLRIIAVSTSAPAEKIE 120

Query: 259 AFRKKNINI-IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
              KK + I    +  DL++L+ +L   G+  L+VEGGA +    +++ LVD I  +   
Sbjct: 121 KLEKKALVIKAGTEKVDLQELVRVLKKMGINILMVEGGATLNWGMLSAGLVDEIYTFVGN 180

Query: 318 IVIGEGGIPSPLEEGYL 334
            +IG    P+  +    
Sbjct: 181 FIIGGATAPTFTDGKGF 197


>gi|121612362|ref|YP_001001265.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|121504161|gb|EAQ72749.2| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 336

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 152/374 (40%), Gaps = 79/374 (21%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
             +M+ AL  +  +  LT  NP+V C+I+ K+G ++        G  HAE+ A+  A + 
Sbjct: 13  EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNGKILAIKAHEKAGLAHAELNAITHAFKS 72

Query: 67  AR-------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
            R                          + A+VTLEPCSH G++PPCA+   E G +++ 
Sbjct: 73  LRPEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 132

Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
           + V D + +++  G ++L ++GI +   +++ EGK  L  +L  Q  +     L ++++ 
Sbjct: 133 ISVKDGN-KIASGGAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQKGQFKLFKLALSMNG 191

Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
                        ++  +S+   H +RA  D ++VG  T+  D P L  RL   +  +P 
Sbjct: 192 SPF-------GKIVSNELSRTYAHKIRAVIDLLVVGGETIRKDHPILDARL--CKAKAPN 242

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
             IL      + D  I                 P+  +  R+    I             
Sbjct: 243 LCILSRQNIDNFDKNI-----------------PLFKVPNRQIYTQIPSEAKF------- 278

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
                    L+ EGG     +F     +D  ++++S  +  E  +  PL       NF  
Sbjct: 279 ---------LMYEGGENFLKTF-KDG-IDMFLIFQSSSLNDEKNVTIPL-------NFKP 320

Query: 341 VRRDYFGSDVCLEY 354
           + R++ GSD    Y
Sbjct: 321 LYRNFLGSDTYGIY 334


>gi|86152942|ref|ZP_01071147.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|167006160|ref|ZP_02271918.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|85843827|gb|EAQ61037.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni HB93-13]
          Length = 326

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 152/374 (40%), Gaps = 79/374 (21%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
             +M+ AL  +  +  LT  NP+V C+I+ K+G ++        G  HAE+ A+  A + 
Sbjct: 3   EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNGKILAIKAHEKAGLAHAELNAITHAFKS 62

Query: 67  AR-------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
            R                          + A+VTLEPCSH G++PPCA+   E G +++ 
Sbjct: 63  LRPEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 122

Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
           + V D + +++  G ++L ++GI +   +++ EGK  L  +L  Q  +     L ++++ 
Sbjct: 123 ISVKDGN-KIASGGAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQKGQFKLFKLALSMNG 181

Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
                        ++  +S+   H +RA  D ++VG  T+  D P L  RL   +  +P 
Sbjct: 182 SPF-------GKIVSNELSRTYAHKIRAVIDLLVVGGETIRKDHPILDARL--CKAKAPN 232

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
             IL      + D  I                 P+  +  R+    I             
Sbjct: 233 LCILSRQNIDNFDKNI-----------------PLFKVPNRQIYTQIPSEAKF------- 268

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
                    L+ EGG     +F     +D  ++++S  +  E  +  PL       NF  
Sbjct: 269 ---------LMYEGGENFLKTF-KDG-IDMFLIFQSSSLNDEKNVTIPL-------NFKP 310

Query: 341 VRRDYFGSDVCLEY 354
           + R++ GSD    Y
Sbjct: 311 LYRNFLGSDTYGIY 324


>gi|294507525|ref|YP_003571583.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Salinibacter
           ruber M8]
 gi|294343853|emb|CBH24631.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Salinibacter
           ruber M8]
          Length = 459

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/224 (27%), Positives = 99/224 (44%), Gaps = 14/224 (6%)

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
                + +  +TL  A S D  I       +PI+   +    H LRA  D ILVGIGTVL
Sbjct: 228 RYFAEKGQPFVTLTYAQSLDGSIASKSGTPLPISSEQALRFTHQLRALHDGILVGIGTVL 287

Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
           ADDP LT R N      P+ I+LD   +   D++++      P+I+ + N DP       
Sbjct: 288 ADDPRLTVRHNDGTH--PVPIVLDSSLRFPSDAQLLAGDGPDPLIVTSPNADPDRKERLE 345

Query: 262 KKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
                +I   C       ++ LL  L  R  +S++VEGG ++  SF+  +    +I+  +
Sbjct: 346 AHGGTVIELSCGPEGGICVRTLLRTLGERDFSSVMVEGGTSILTSFLRRQCAQRVIVTVA 405

Query: 317 QIVIGEGGIPSPLEEGYLE-------KNFMCVRRDYFGSDVCLE 353
            + +G     S L     +            +++ ++G D+ LE
Sbjct: 406 PMFVGGTAALSSLAPEEQDTHARSDFPRLDNIQQRWYGEDLVLE 449


>gi|147921689|ref|YP_684491.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [uncultured
           methanogenic archaeon RC-I]
 gi|110619887|emb|CAJ35165.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine
           1-reductase (riboflavin-specific deaminase) [uncultured
           methanogenic archaeon RC-I]
          Length = 226

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 9/208 (4%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           +  R +  +  A+S D  I       V I+G    ++V  LRA SDA++VGIGTVLADDP
Sbjct: 1   MLDRPYTFINSAMSADGKISTKKRKQVKISGKTDFDRVDELRAGSDAVMVGIGTVLADDP 60

Query: 206 ELTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
            LT         R+   ++ +P R+++D   +    + I K      +++V++       
Sbjct: 61  SLTVKSEERRKRRVAEGKDENPARVVVDSQARTPPTADIFKKGTGKRIVVVSQAAPADRV 120

Query: 258 LAFRKK-NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
            A ++K  I +   D  DL+++   L  RG+  L++EGGA + ++ ++ RLVD I ++  
Sbjct: 121 AALKEKAEIIVCGKDEVDLEQMSVELKKRGINRLMIEGGATLNYAMVSRRLVDEISVFVG 180

Query: 317 QIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
            ++IG    P+ ++   + +    V   
Sbjct: 181 NLIIGGKDAPTFMDGPGIAERSEAVELR 208


>gi|327400817|ref|YP_004341656.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
           pyrimidine1-reductase [Archaeoglobus veneficus SNP6]
 gi|327316325|gb|AEA46941.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
           pyrimidine1-reductase [Archaeoglobus veneficus SNP6]
          Length = 226

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 62/213 (29%), Positives = 102/213 (47%), Gaps = 8/213 (3%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            H+ + +A S D  I       + I+      +V  LRA+SDAI+VGIGTVL+DDP LT 
Sbjct: 7   PHVFINVAASADGRISDESRRQIRISCEEDMQRVDRLRAESDAIVVGIGTVLSDDPRLTV 66

Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
                   R+   +  +P+R+++D   +  L+++++       V +    D+  +A    
Sbjct: 67  KSQALREERVKNGRTPNPLRVVVDSRARTPLNARVLDGEAETLVAVSDLADEERVAALRE 126

Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           K ++ +   +  DL+ L+  L   GV  ++VEGGA + HS I   LVD I++Y   ++IG
Sbjct: 127 KASVFVAGQEKVDLRALMEYLYSIGVRRVMVEGGARLNHSLIAEGLVDEIMVYYGGMIIG 186

Query: 322 EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
            G   +             VR    GS V   +
Sbjct: 187 NGPCIADGPSFKPPVPLELVRVSRLGSGVLAVW 219


>gi|91774264|ref|YP_566956.1| hypothetical protein Mbur_2352 [Methanococcoides burtonii DSM 6242]
 gi|91713279|gb|ABE53206.1| 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate
           reductase [Methanococcoides burtonii DSM 6242]
          Length = 226

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 107/221 (48%), Gaps = 13/221 (5%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             R    +  A+S D  I       V I+G I  +++  LRA SDAI+VGIGTVLADDP 
Sbjct: 1   MNRPFTFINSAMSADGKISTKERKQVRISGDIDFDRMDELRASSDAIMVGIGTVLADDPS 60

Query: 207 LTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           LT         R N   +  P+RII+D   +  L++ I K      ++ V+ +       
Sbjct: 61  LTVKSRYRRDTRKNKGLDEDPVRIIVDSKARTPLNADIFKKGTGMRIVAVSSSAPKEKVD 120

Query: 259 AFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
           A  KK   I   D + DL  L+  L   G+  L+VEGGA +    +++ LVD +  +   
Sbjct: 121 ALSKKATIITAGDEKVDLVLLMGQLSSMGIQRLMVEGGATLNWGLLSNGLVDEVFSFIGN 180

Query: 318 IVIGEGGIPSPLE-EGYLEKNFMCVRR---DYFGSDVCLEY 354
           I IG    P+ ++ EG+L+ +F+ +     +     V L++
Sbjct: 181 IFIGGNSSPTLVDGEGFLKGDFLPLELISSETIEEGVLLKW 221


>gi|148925766|ref|ZP_01809454.1| putative riboflavin-specific deaminase [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145845776|gb|EDK22867.1| putative riboflavin-specific deaminase [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 336

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 85/374 (22%), Positives = 152/374 (40%), Gaps = 79/374 (21%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
             +M+ AL  +  +  LT  NP+V C+I+ K+  ++        G  HAE+ A+  A + 
Sbjct: 13  EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKS 72

Query: 67  AR-------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
            R                          + A+VTLEPCSH G++PPCA+   E G +++ 
Sbjct: 73  LRPEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 132

Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
           + V D + +++  G ++L ++GI +   +++ EGK  L  +L  Q  +     L ++++ 
Sbjct: 133 ISVKDGN-KIASGGAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQKGQFKLFKLALSMNG 191

Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
                        ++  +S+   H +RA  D ++VG  T+  D P L  RL   +  +P 
Sbjct: 192 SPF-------GKIVSNELSRTYAHKIRAVIDLLVVGGETIRKDHPILDARL--CKAKAPN 242

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
             IL      + D  I                 P+  +  R+    I             
Sbjct: 243 LCILSRQNIDNFDKNI-----------------PLFKVPNRQIYTQIPSEAKF------- 278

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
                    L+ EGG     +F +   +D  ++++S  +  E  +  PL       NF  
Sbjct: 279 ---------LMYEGGENFLKTFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKP 320

Query: 341 VRRDYFGSDVCLEY 354
           + R++ GSD    Y
Sbjct: 321 LYRNFLGSDTYGIY 334


>gi|288931633|ref|YP_003435693.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Ferroglobus placidus DSM 10642]
 gi|288893881|gb|ADC65418.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Ferroglobus placidus DSM 10642]
          Length = 225

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 97/222 (43%), Gaps = 10/222 (4%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             + + +A S D  I       + I+      +V  LRA+SDAI+VGIGTVLAD+P+LT 
Sbjct: 3   PFVFVNVAASVDGKISNERRVQLRISSKEDMERVDKLRAESDAIMVGIGTVLADNPKLTV 62

Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
                   R+   +  +P+R+++D   ++  D+ I+       + +  + D   L     
Sbjct: 63  KSDELRKKRVLEGKPENPLRVVVDSKARIPEDALILNDEAETLLAVSKKADLEKLKKLQE 122

Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           K  I +   +  DL +L+  L   GV  L+VEGG  +  S     LVD I +Y   ++I 
Sbjct: 123 KAMIFVAGEERVDLSELMEFLYHIGVRKLMVEGGGELIASLFREGLVDEIYVYYGNVIIA 182

Query: 322 EGGIPSPLEEGYLEK--NFMCVRRDYFGSDVCLEYIGKNLCL 361
               P+  +   L++      +     G  +   +  K    
Sbjct: 183 GKNSPTIADGKSLDEPAELELLEFKKLGGGILTRWRVKRKRF 224


>gi|116753917|ref|YP_843035.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanosaeta thermophila PT]
 gi|116665368|gb|ABK14395.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Methanosaeta thermophila PT]
          Length = 222

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 17/219 (7%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++ +  A+S D  I       V I+G     +V  LRA+SDA++VG+GTV+ADDP L  
Sbjct: 3   PYVLINSAMSADGKISSFLRRQVRISGSEDLLRVERLRAESDAVMVGLGTVIADDPTLRV 62

Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
                   RL      +P+RI+ D   +   +++++        I+      P   L   
Sbjct: 63  KSEALRSWRLERGVPENPLRIVADSRARTPPEARVLGPGC----IVAVSRYAPEDRLKEL 118

Query: 262 KKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
            +   I  C  D  DL++LL +L  RGV  L+VEGG  +  S I   LVD I ++   +V
Sbjct: 119 SERCEIAICGEDRVDLRELLEMLYRRGVRRLMVEGGGTLNWSLIEQGLVDEICVFVGPMV 178

Query: 320 IGEGGIPSPLEEGYLEKNFMCVRR---DYFGSDVCLEYI 355
           IG    P+ ++     +NF  +     +     + L++ 
Sbjct: 179 IGGQDAPTLVDGRGFPENFQRLELESAERIDDGLLLKWR 217


>gi|83815284|ref|YP_445633.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Salinibacter
           ruber DSM 13855]
 gi|83756678|gb|ABC44791.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Salinibacter
           ruber DSM 13855]
          Length = 455

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 99/224 (44%), Gaps = 14/224 (6%)

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
                + R  +TL  A S D  I       +PI+   +    H LRA  D ILVGIGTVL
Sbjct: 224 RYFAEKGRPFVTLTYAQSLDGSIASTSGTPLPISSEQALRFTHQLRALHDGILVGIGTVL 283

Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
           ADDP LT R N      P+ I+LD   +   D++++      P+I+ + N DP       
Sbjct: 284 ADDPRLTVRHNDGTH--PVPIVLDSSLRFPSDAQLLAGDGPDPLIVTSPNADPDRKERLE 341

Query: 262 KKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
                +I   C       +K LL  L  R  +S++VEGG ++  SF+  +    +I+  +
Sbjct: 342 AHGGTVIELSCGPEGGICVKTLLRTLGERDFSSVMVEGGTSILTSFLRRQCAQRVIVTVA 401

Query: 317 QIVIGEGGIPSPLEEGYLE-------KNFMCVRRDYFGSDVCLE 353
            + +G     S L     +            +++ ++G D+ LE
Sbjct: 402 PMFVGGTAALSSLAPEDQDTHARSDFPRLDNIQQRWYGEDLVLE 445


>gi|268678892|ref|YP_003303323.1| riboflavin biosynthesis protein RibD [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268616923|gb|ACZ11288.1| riboflavin biosynthesis protein RibD [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 338

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 93/382 (24%), Positives = 150/382 (39%), Gaps = 76/382 (19%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALE 61
           V++ D   M  AL  +  +  LT  NP+V  ++  D G ++G G     G PHAEV AL+
Sbjct: 2   VNALDNALMQKALDAAWHYQVLTFPNPAVGAVVSNDAGEILGMGAHRKAGTPHAEVLALK 61

Query: 62  EAGEEARGAT---------------------------AYVTLEPCSHYGRSPPCAQFIIE 94
           EA       T                            +VTLEPC H+G++PPC+  I  
Sbjct: 62  EAYLTLTHDTRIEALSDSMALHLFLKENHQHLFSNLSLHVTLEPCHHFGKTPPCSSLIEA 121

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL 154
            GI+RVV+   D  +R +  G  +L  +G+ V      E    L    T + +K   I  
Sbjct: 122 LGIKRVVIGSYDESLR-AKGGGAYLQSRGVDVSFGCLKEACDTLLTPFTCKEKKEPFIFY 180

Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214
           K+A+S +++   A  G+  IT   S+  VH LR   D +++G  TV  D P L  RL   
Sbjct: 181 KLALSANSV---ATGGT--ITSLESRTMVHRLRDCCDLMVIGGNTVRVDRPTLDARL--C 233

Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274
           +  +P  +I            + +       I                          + 
Sbjct: 234 EGKAPDILIYSHENTFDRTIPLFQCPSRKVFI-------------------------EKS 268

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
           L+++      R    +++EGGA++  +      V+  +++RS  +  + G     EE  L
Sbjct: 269 LERI------REYRMVMIEGGASMLKAMEEQ--VEWYLIFRSPHI--KEG-----EEIKL 313

Query: 335 EKNFMCVRRDYFGSDVCLEYIG 356
            +    +     G D    Y  
Sbjct: 314 PQGLKEIFSCEIGEDRMSWYRR 335


>gi|126179969|ref|YP_001047934.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanoculleus
           marisnigri JR1]
 gi|125862763|gb|ABN57952.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Methanoculleus marisnigri JR1]
          Length = 226

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 14/219 (6%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             + + IA+S D  I       V I+G     +V  ++A+SDAI+VGIGTVLAD+P LT 
Sbjct: 3   PFVFVNIAMSADGKISTRERRQVRISGNEDYLRVDRIKAESDAIMVGIGTVLADNPSLTV 62

Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
                   R    ++ +P+RI++D   +   D+ I+       ++ V++        A R
Sbjct: 63  KSPELRAERRAAGKDENPIRIVVDGRGRTPPDADILHKGSGKRIVAVSKKAPKKAVEALR 122

Query: 262 KKNINIIYCD-CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
           ++   ++  +   DL+ LL  L  +GV  L+VEGG  +  +     LVD +  +   IVI
Sbjct: 123 EQAAVVVGGEETVDLRGLLEELHRQGVRRLMVEGGGTLIWTLFEQGLVDELQAFVGNIVI 182

Query: 321 GEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354
           G    P+P +     +         +    F   + + +
Sbjct: 183 GGKEAPTPTDGAGFLREEDFPRLRIIEAVRFDDGLLVRW 221


>gi|167577925|ref|ZP_02370799.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
           TXDOH]
          Length = 195

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 67/193 (34%), Positives = 101/193 (52%), Gaps = 3/193 (1%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
             S  D   M+ ALR +   +  T  NP V C+I +    +G G     G PHAEV AL 
Sbjct: 3   TFSDIDRMHMAHALRLAEQGLYTTHPNPRVGCVIARGAQALGAGWHRRAGEPHAEVHALR 62

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           EAGE ARGATAYVTLEPC+H+GR+PPCA  ++  G+ RVV+   DP  +V+GRG   L+ 
Sbjct: 63  EAGERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLAD 122

Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG--FI 178
            GI+V+  ++E++ +     + +R    R      +++  D            +      
Sbjct: 123 AGIVVEQGLLEAQARELNIGFFSRIERGRPWTRATLSLPIDGPPAPDSADLAALDAAPSE 182

Query: 179 SKNQVHLLRAQSD 191
           +++ +   RA+S 
Sbjct: 183 ARDDLRHWRARSS 195


>gi|57238634|ref|YP_179765.1| riboflavin biosynthesis protein RibD, putative [Campylobacter
           jejuni RM1221]
 gi|57167438|gb|AAW36217.1| riboflavin biosynthesis protein RibD, putative [Campylobacter
           jejuni RM1221]
 gi|315059073|gb|ADT73402.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Campylobacter jejuni subsp. jejuni S3]
          Length = 326

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 85/374 (22%), Positives = 151/374 (40%), Gaps = 79/374 (21%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
             +M+ AL  +  +  LT  NP+V C+I+ K+  ++        G  HAE+ A+  A + 
Sbjct: 3   EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKS 62

Query: 67  AR-------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
            R                          + A+VTLEPCSH G++PPCA+   E G +++ 
Sbjct: 63  LRPEISLPKEVNALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 122

Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
           + V D + +++  G ++L ++GI +   +++ EGK  L  +L  Q  +     L ++++ 
Sbjct: 123 ISVKDEN-KIASGGAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQKGQFKLFKLALSMNG 181

Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
                        ++  +S+   H +RA  D ++VG  T+  D P L  RL   +  +P 
Sbjct: 182 SPF-------GKIVSNKLSRTYAHKIRAVIDLLVVGGETIRKDRPILDARL--CKAKAPN 232

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
             IL      + D  I                 P+  +  R+    I             
Sbjct: 233 LCILSRQNIDNFDKNI-----------------PLFKVPNRQIYTQIPSEAKF------- 268

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
                    L+ EGG      F +   +D  ++++S  +  E  +  PL       NF  
Sbjct: 269 ---------LMYEGGENFLKIFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKP 310

Query: 341 VRRDYFGSDVCLEY 354
           + R++ GSD    Y
Sbjct: 311 LYRNFLGSDTYGIY 324


>gi|224419196|ref|ZP_03657202.1| putative riboflavin-specific deaminase [Helicobacter canadensis MIT
           98-5491]
 gi|253828126|ref|ZP_04871011.1| Riboflavin biosynthesis protein RibD [Helicobacter canadensis MIT
           98-5491]
 gi|313142700|ref|ZP_07804893.1| riboflavin biosynthesis protein RibD [Helicobacter canadensis MIT
           98-5491]
 gi|253511532|gb|EES90191.1| Riboflavin biosynthesis protein RibD [Helicobacter canadensis MIT
           98-5491]
 gi|313131731|gb|EFR49348.1| riboflavin biosynthesis protein RibD [Helicobacter canadensis MIT
           98-5491]
          Length = 346

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 72/386 (18%), Positives = 138/386 (35%), Gaps = 73/386 (18%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAG 64
            D  ++  A++ +      T  NP+V  LI+  +G ++        G PHAEV AL+EA 
Sbjct: 3   DDNFYLELAIKEAWKTQCQTLPNPAVGALILDHNGRILALQAHQEAGKPHAEVLALKEAY 62

Query: 65  EEA---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                                           AT YVTLEPC H G++P CA  +   GI
Sbjct: 63  FNLTQDSNILPLEQSIQIHEYLKQKAHSLFHNATLYVTLEPCMHEGKTPSCAALLESLGI 122

Query: 98  RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
           +++++   DP+ + +  G ++L Q+G  + +  E++            +   + +  K  
Sbjct: 123 KKLIIGTKDPNPK-AQGGAEYLQQRGCKIIKAWENKELQKSSILANDLLLPFNSLQKKGN 181

Query: 158 VSQDNMIGMAGCGSV--PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215
                             I+   ++  +H LR + D +++   +VL D+P L  R N LQ
Sbjct: 182 FILFKYACRLNGSINGGQISSKETQIFMHNLRCKLDELVISGKSVLIDNPILDSRFNSLQ 241

Query: 216 -EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274
            + +P   IL         + +         I+ +  +                      
Sbjct: 242 SQKNPNITILTRKNDFPQTAPLFSIPNRQVRILHSIPNFSGF------------------ 283

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
                          ++ EGG  +  + +    +D ++++ S  +       +     + 
Sbjct: 284 ---------------IMCEGGINLLQNLLPQ--IDMLLVFLSPTL------STYDLAPHF 320

Query: 335 EKNFMCVRRDYFGSDVCLEYIGKNLC 360
             NF  +      +D+ L  + K  C
Sbjct: 321 NANFKLLHSQPIRNDLALWLLPKKEC 346


>gi|152993547|ref|YP_001359268.1| riboflavin biosynthesis protein RibG [Sulfurovum sp. NBC37-1]
 gi|151425408|dbj|BAF72911.1| riboflavin biosynthesis protein RibG [Sulfurovum sp. NBC37-1]
          Length = 330

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 76/340 (22%), Positives = 128/340 (37%), Gaps = 73/340 (21%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL  +  +  LT  NP+V  ++  DG ++        G  HAEV AL +A E 
Sbjct: 3   DEFYMQLALDKAWEYQLLTYPNPAVGAVVTLDGTILAVEAHKKAGTSHAEVLALLKAYET 62

Query: 67  ARGAT---------------------------AYVTLEPCSHYGRSPPCAQFIIECGIRR 99
              +T                            YVTLEPCSH GR+P CA  +    +++
Sbjct: 63  LSQSTVDFDRMDAQKAHNFLHTIPKDFFSECSIYVTLEPCSHEGRTPACATLLEALNLKK 122

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
           V++   DP     G G+  L         ++E   +  +  +L  Q      +  K+A +
Sbjct: 123 VIIGTKDPIEGHGG-GMDRLKNN---TSGVLEEACQALIEPFLIWQERAF--VLFKLAQT 176

Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219
            +  I     G   ++   S   VH LR + D +L+G  TV  D P L CR  G     P
Sbjct: 177 TNGRI-----GGGYLSSKSSLKHVHQLREKCDRLLIGGNTVRTDRPTLDCRFTGGTV--P 229

Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279
             +I      +  +  +         + VT+  + +   +F                   
Sbjct: 230 DVVIYSKKDDIDREMPLFTVKNR--TVTVTDKLNFLEKPSF------------------- 268

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
                     +LVEGG  + ++      +D +++Y++  +
Sbjct: 269 ----------VLVEGGEGMLNALKEK--IDWMLIYQTPKL 296


>gi|313681592|ref|YP_004059330.1| riboflavin biosynthesis protein ribd [Sulfuricurvum kujiense DSM
           16994]
 gi|313154452|gb|ADR33130.1| riboflavin biosynthesis protein RibD [Sulfuricurvum kujiense DSM
           16994]
          Length = 336

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 82/361 (22%), Positives = 130/361 (36%), Gaps = 71/361 (19%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACL-IVKDGIVIGRGVTAYGGCPHAEVQA 59
           M  ++     M+ AL  +  +  LT  NP+V  + +  +G V+  G     G PHAEV A
Sbjct: 1   MNTTAA-IHAMTLALNAAWEYQLLTFPNPAVGAVCLSDNGTVVSVGTHKRAGGPHAEVYA 59

Query: 60  LEEAGEEARGATAY---------------------------VTLEPCSHYGRSPPCAQFI 92
           L +A     G T                             VTLEPCSH G++P CA  I
Sbjct: 60  LRDAYTLLSGDTTIAGCDDSHRIHDYLRTRHNGIFHTVSMAVTLEPCSHSGKTPSCALLI 119

Query: 93  IECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHI 152
            + GI+RV + V DP+   +  G   LS  G      +  E    L     R  +    +
Sbjct: 120 RDLGIKRVYISVKDPNP-AAAGGASLLSDAGAECVFGIMEEEGEKLLEPFIRWQKS-PFV 177

Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN 212
             K A   D  I         I+   S+  +H LR + D I++G  TV  D P L  RL 
Sbjct: 178 FFKWAQRLDGTIDNGT-----ISSQSSREHMHALRDRCDLIVIGGNTVRHDRPTLDARL- 231

Query: 213 GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC 272
            +   +P  +I     +      +          +  E+                     
Sbjct: 232 -VDGKAPDVLIYSQMGEFDQSIPLFSVPDRK---VYVESS-------------------- 267

Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
                 L  L    +  +++EGG ++  +  +    D  + Y +  + G      P++E 
Sbjct: 268 ------LERLKEYSL--VMIEGGTSMFQA--SQNTCDWYLCYLAPKLGGGLQNMGPIQED 317

Query: 333 Y 333
           +
Sbjct: 318 F 318


>gi|283957008|ref|ZP_06374480.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791509|gb|EFC30306.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Campylobacter jejuni subsp. jejuni 1336]
          Length = 326

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 85/374 (22%), Positives = 151/374 (40%), Gaps = 79/374 (21%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
             +M+ AL  +  +  LT  NP+V C+I+ K+  ++        G  HAE+ A+  A + 
Sbjct: 3   KFYMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKS 62

Query: 67  AR-------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
            R                          + A+VTLEPCSH G++PPCA+   E G +++ 
Sbjct: 63  LRPEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 122

Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
           + V D + +++  G ++L ++GI +   +++ EGK  L  +L  Q  +     L ++++ 
Sbjct: 123 ISVKDEN-KIASGGAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQKGQFKLFKLALSMNG 181

Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
                        ++  +S+   H +RA  D ++VG  T+  D P L  RL   +  +P 
Sbjct: 182 SPF-------GKIVSNDLSRTYTHKIRAVIDLLVVGGETIRKDHPILDARL--CKAKAPN 232

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
             IL      + D  I                 P+  +  R+    I             
Sbjct: 233 LCILSRQNIDNFDKNI-----------------PLFKVPNRQIYTQIPSEAKF------- 268

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
                    L+ EGG      F +   +D  ++++S  +  E  +  PL       NF  
Sbjct: 269 ---------LMYEGGENFLKIFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKP 310

Query: 341 VRRDYFGSDVCLEY 354
           + R++ GSD    Y
Sbjct: 311 LYRNFLGSDTYGIY 324


>gi|330814131|ref|YP_004358370.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487226|gb|AEA81631.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 355

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 81/312 (25%), Positives = 154/312 (49%), Gaps = 10/312 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
             F   AL  +R +  +T  NPSV C++   +  ++  GVT+  G PHAE  AL +  ++
Sbjct: 11  KYFSELALSLARINKFITKENPSVGCVVTDFNNNILSSGVTSKNGRPHAENNALIKLNKK 70

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
                 +VTLEPC+HYG++PPC + I+   ++++     D +  V+G GL++L +  I +
Sbjct: 71  I-TKKIFVTLEPCNHYGKTPPCTKKIVNFNVKQLHCNQIDKNPAVNGSGLKFLKENKIKI 129

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
                ++     + Y  +   K  ++T K+A++++    ++G      T   S    HLL
Sbjct: 130 KESNINKNFYSNYNYSVK--NKLPYVTAKLAITKNFSTVVSGKKY--FTNSKSLKFAHLL 185

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
           R  +D+IL+G  T+L D P+L CR+ GL +HSP    ++ +     + K +     + V+
Sbjct: 186 RYMNDSILIGQKTLLKDYPKLNCRIEGLSQHSPKIFFINRNLN--FNKKHLLLYPRSTVV 243

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
             +  D   ++   +   +  I  +  +   +++L  +       LL+EGG+   + F  
Sbjct: 244 FHSSKDSKKISKYKKYFFLEKIEDNTGNFSPEEILKRIYKHKCRRLLIEGGSETVNIFAK 303

Query: 305 SRLVDSIILYRS 316
           ++ V+     +S
Sbjct: 304 NKYVNKFFFIQS 315


>gi|315928823|gb|EFV08089.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 335

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 84/373 (22%), Positives = 147/373 (39%), Gaps = 78/373 (20%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
             +M+ AL  +  +  LT  NP+V C+I+ K+  ++        G  HAE+ A+  A + 
Sbjct: 13  EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKS 72

Query: 67  AR-------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
            R                          + A+VTLEPCSH G++PPCA+   E G +++ 
Sbjct: 73  LRPEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 132

Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           + V D + +++  G ++L ++GI V+  +  E    L   L  Q  +     L ++++  
Sbjct: 133 ISVKDEN-KIASGGAEFLKKQGIEVEFDILKEEGKKLLKPLKWQKGQFKLFKLALSMNGS 191

Query: 162 NMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR 221
                       ++  +S+   H +RA  D ++VG  T+  D P L  RL   +  +P  
Sbjct: 192 PF-------GKIVSNELSRTYAHEIRAVIDLLVVGGETIRKDCPILDARL--CKAKAPNL 242

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
            IL      + D  I                 P+  +  R+    I              
Sbjct: 243 CILSRQNIDNFDKNI-----------------PLFKVPNRQIYTQIPSEAKF-------- 277

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341
                   L+ EGG      F +   +D  ++++S  +  E  +  PL       NF  +
Sbjct: 278 --------LMYEGGENFLKIFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKPL 320

Query: 342 RRDYFGSDVCLEY 354
            R++ GSD    Y
Sbjct: 321 YRNFLGSDTYGIY 333


>gi|294496137|ref|YP_003542630.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Methanohalophilus mahii DSM 5219]
 gi|292667136|gb|ADE36985.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Methanohalophilus mahii DSM 5219]
          Length = 226

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 112/225 (49%), Gaps = 13/225 (5%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
                  +  A+S D  I       V I+G +   ++  LRA SDA++VGIGTVLADDP 
Sbjct: 1   MPTPFTFINAAMSIDGKISTRQRRQVRISGDVDFERMDELRASSDAVMVGIGTVLADDPS 60

Query: 207 LTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           LT         RL    + +P+RI++D   ++  ++ I +      +I V+E+       
Sbjct: 61  LTVKSDERRAKRLAKGLDENPVRIVVDSKARIPTNADIFRKGAGKIIIAVSESAAFDRVE 120

Query: 259 AFRKKNINIIYC-DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
           + RKK + I+   +  DL +LL+IL   G+  L+VEGGA +    + + LVD I  +   
Sbjct: 121 SLRKKAMVIMAGGNQVDLPELLSILDEMGIHRLMVEGGAGLNWGLVKNGLVDEIYSFIGN 180

Query: 318 IVIGEGGIPSPLE-EGYLEKNF---MCVRRDYFGSDVCLEYIGKN 358
           ++IG G  P+ ++ EG+ E N      +  +     V L++  KN
Sbjct: 181 LIIGGGTAPTLIDGEGFDEANMPTCSLISAEKMEGGVLLKWKLKN 225


>gi|218563211|ref|YP_002344991.1| riboflavin-specific deaminase/reductase [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|112360918|emb|CAL35719.1| riboflavin-specific deaminase/reductase [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|284926817|gb|ADC29169.1| riboflavin-specific deaminase/reductase [Campylobacter jejuni
           subsp. jejuni IA3902]
          Length = 336

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/374 (22%), Positives = 151/374 (40%), Gaps = 79/374 (21%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
             +M+ AL  +  +  LT  NP+V C+I+ K+  ++        G  HAE+ A+  A + 
Sbjct: 13  EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKS 72

Query: 67  AR-------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
            R                          + A+VTLEPCSH G++PPCA+   E G +++ 
Sbjct: 73  LRPEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 132

Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
           + V D + +++  G ++L ++GI +   +++ EGK  L  +L  Q  +     L ++++ 
Sbjct: 133 ISVKDEN-KIASGGAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQKGQFKLFKLALSMNG 191

Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
                        ++  +S+   H +RA  D ++VG  T+  D P L  RL   +  +P 
Sbjct: 192 SPF-------GKIVSNELSRTYAHEIRAVIDLLVVGGETIRKDCPILDARL--CKAKAPN 242

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
             IL      + D  I                 P+  +  R+    I             
Sbjct: 243 LCILSRQNIDNFDKNI-----------------PLFKVPNRQIYTQIPSEAKF------- 278

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
                    L+ EGG      F +   +D  ++++S  +  E  +  PL       NF  
Sbjct: 279 ---------LMYEGGENFLKIFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKP 320

Query: 341 VRRDYFGSDVCLEY 354
           + R++ GSD    Y
Sbjct: 321 LYRNFLGSDTYGIY 334


>gi|86149383|ref|ZP_01067614.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88596073|ref|ZP_01099310.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|85840165|gb|EAQ57423.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88190914|gb|EAQ94886.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni 84-25]
          Length = 326

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/374 (22%), Positives = 151/374 (40%), Gaps = 79/374 (21%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
             +M+ AL  +  +  LT  NP+V C+I+ K+  ++        G  HAE+ A+  A + 
Sbjct: 3   EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKS 62

Query: 67  AR-------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
            R                          + A+VTLEPCSH G++PPCA+   E G +++ 
Sbjct: 63  LRPEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 122

Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
           + V D + +++  G ++L ++GI +   +++ EGK  L  +L  Q  +     L ++++ 
Sbjct: 123 ISVKDEN-KIASGGAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQKGQFKLFKLALSMNG 181

Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
                        ++  +S+   H +RA  D ++VG  T+  D P L  RL   +  +P 
Sbjct: 182 SPF-------GKIVSNELSRTYAHEIRAVIDLLVVGGETIRKDCPILDARL--CKAKAPN 232

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
             IL      + D  I                 P+  +  R+    I             
Sbjct: 233 LCILSRQNIDNFDKNI-----------------PLFKVPNRQIYTQIPSEAKF------- 268

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
                    L+ EGG      F +   +D  ++++S  +  E  +  PL       NF  
Sbjct: 269 ---------LMYEGGENFLKIFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKP 310

Query: 341 VRRDYFGSDVCLEY 354
           + R++ GSD    Y
Sbjct: 311 LYRNFLGSDTYGIY 324


>gi|205355636|ref|ZP_03222406.1| putative riboflavin specific deaminase [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205346413|gb|EDZ33046.1| putative riboflavin specific deaminase [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 326

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/374 (22%), Positives = 150/374 (40%), Gaps = 79/374 (21%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
             +M+ AL  +  +  LT  NP+V C+I+ K+  ++        G  HAE+ A+  A + 
Sbjct: 3   EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKS 62

Query: 67  AR-------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
            R                          + A+VTLEPCSH G++PPCA+   E G +++ 
Sbjct: 63  LRPEISLPKEVNALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 122

Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
           + V D + +++  G ++L ++GI +   +++ EGK  L  +L  Q  +     L ++++ 
Sbjct: 123 ISVKDEN-KIASGGAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQKGQFKLFKLALSMNG 181

Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
                        ++  +S+   H +RA  D ++VG  T+  D P L  RL   +  +P 
Sbjct: 182 SPF-------GKIVSNKLSRTYAHKIRAVIDLLVVGGETIRKDRPILDTRL--CKAKAPN 232

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
             IL      + D  I                 P+  +  R+    I             
Sbjct: 233 LCILSRQNIDNFDKNI-----------------PLFKVPNRQIYTQIPSEAKF------- 268

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
                    L+ EGG      F     +D  ++++S  +  E  +  PL       NF  
Sbjct: 269 ---------LMYEGGENFLKIF-KDG-IDMFLIFQSSSLNDEKNVTIPL-------NFKP 310

Query: 341 VRRDYFGSDVCLEY 354
           + R++ GSD    Y
Sbjct: 311 LYRNFLGSDTYGIY 324


>gi|330991420|ref|ZP_08315371.1| Riboflavin biosynthesis protein ribD [Gluconacetobacter sp. SXCC-1]
 gi|329761439|gb|EGG77932.1| Riboflavin biosynthesis protein ribD [Gluconacetobacter sp. SXCC-1]
          Length = 339

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 80/317 (25%), Positives = 131/317 (41%), Gaps = 35/317 (11%)

Query: 12  SAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
            AA+  +  HVG+T+ NP V C ++ +DG ++  G     G PHAE+QA+ +    G   
Sbjct: 15  RAAVDEAARHVGVTAPNPPVGCALLDRDGTILAVGGHHRAGTPHAEIQAINQCRARGLLD 74

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG---- 123
           R  TA VTLEPC+H GR+ PC+  +    +R V + + DP+  V+G G  +L  +G    
Sbjct: 75  RAHTAVVTLEPCNHTGRTGPCSHALAATPVRDVWIGLRDPNPHVAGGGAGYLRSQGRSVH 134

Query: 124 IIVDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           ++     ++      +  L  +       +  IT+K AV     +      +   T   S
Sbjct: 135 VLQPTGPQAAPRDLCRSLLAPFAHFARTGQPWITVKQAVDATGSMLPPPGRTT-FTAATS 193

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
            +  H LR  +DA++    T+ AD P L  R            + D   +     +++  
Sbjct: 194 LDLAHRLRRATDAVITTGRTIRADRPGLDVRR-----------VPDHTGRAP---RVLA- 238

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
                  I T   +   A     +N       C D+  L  +L   GVT  +VE G A+ 
Sbjct: 239 -------ICTRTGEVDDAYLTAARNRGFDVRLCTDIAALPDLLGRAGVTWAMVEAGPALL 291

Query: 300 HSFINSRLVDSIILYRS 316
                  L    +   +
Sbjct: 292 AELRARGLWHDWLTITA 308


>gi|255602376|ref|XP_002537841.1| riboflavin-specific deaminase, putative [Ricinus communis]
 gi|223514866|gb|EEF24541.1| riboflavin-specific deaminase, putative [Ricinus communis]
          Length = 110

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 57/109 (52%), Positives = 76/109 (69%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M ++S D  +M+ ALR +   +  T+ NP V C+IVK+G ++G G     G PHAEV AL
Sbjct: 1   MQMTSQDIEWMTRALRLAARGLYTTTPNPRVGCVIVKNGQLVGEGAHLKAGEPHAEVHAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
             AGE+ARGATAYVTLEPCSH+GR+PPCA  ++  G+ RVVV + DP+ 
Sbjct: 61  RAAGEQARGATAYVTLEPCSHFGRTPPCADALVNAGVSRVVVAMQDPNP 109


>gi|319789432|ref|YP_004151065.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Thermovibrio ammonificans HB-1]
 gi|317113934|gb|ADU96424.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Thermovibrio ammonificans HB-1]
          Length = 220

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 103/221 (46%), Gaps = 13/221 (5%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGC----GSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
            +R ++ +   V+ D  + +A        + +    +   +H +RA+ D I+VG  TV  
Sbjct: 1   MERPYVLIVSEVTIDGKLTLAKGVSSKEIMKLMDDEANRYLHAVRAECDGIMVGANTVRI 60

Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
           D+P LT R   ++  +P+R+I      + LD+ ++ T +   +I V+E        AF++
Sbjct: 61  DNPNLTVRY--VEGKNPIRVIPTSTGDIPLDANVLNTEVAPTIIAVSERAPKEKVEAFKE 118

Query: 263 KNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
           +   ++    +  +   LL +L  RG+  L+VEGG+AV    I + LVD I L    +++
Sbjct: 119 RGAEVLVAGKEKIEFPLLLKLLKERGIEKLMVEGGSAVNWELIKNDLVDEIRLIHLPVIV 178

Query: 321 GEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIG 356
           G   +PS +     +     K F   R    G+ V  E+  
Sbjct: 179 GGDDVPSLVSGEGFKTLSAVKRFKIKRVFRCGNQVITEFER 219


>gi|307596329|ref|YP_003902646.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p
           yrimidine1-reductase [Vulcanisaeta distributa DSM 14429]
 gi|307551530|gb|ADN51595.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p
           yrimidine1-reductase [Vulcanisaeta distributa DSM 14429]
          Length = 219

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 95/221 (42%), Gaps = 14/221 (6%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             + ++ +  A S D  I         ++      ++H +RA  DAI+VG  TV+ DDP 
Sbjct: 1   MPKPYVIIVSAASIDGRIASKTG-YSRLSCPFDLRRLHEVRASVDAIMVGANTVINDDPS 59

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
           LT R       +P+R+++D   ++ L +K++       +I+ TE  D          ++ 
Sbjct: 60  LTPRYV-KAIRNPIRVVIDGKLRIPLTAKVVTNKEAPTIIVTTEQADRNKIAQLMNMSVE 118

Query: 267 IIYC--DCRDLKKLLTILV-GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           +     +  +LK +L  L   + V  +LVEGG  +    I   LVD I L  S  V G G
Sbjct: 119 VWVMGKERINLKDVLERLFMEKNVKRVLVEGGGHLNWELIKEGLVDEIRLTISPYVFGAG 178

Query: 324 -------GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
                  G P+ +E   L      V     G +V L YI +
Sbjct: 179 TSFIEGEGYPTTIEGPRL--RLKSVNICECGQEVILNYIVE 217


>gi|283953762|ref|ZP_06371293.1| riboflavin biosynthesis protein RibD, putative [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283794803|gb|EFC33541.1| riboflavin biosynthesis protein RibD, putative [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 326

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 150/374 (40%), Gaps = 79/374 (21%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
             +M+ AL  +  +  LT  NP+V C+I+ K+G ++        G  HAE+  +  A + 
Sbjct: 3   EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNGKILAIKAHEKAGFAHAELNTIAHAFKN 62

Query: 67  A-------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                                     + + A+VTLEPCSH G++PPCA+   + G ++V 
Sbjct: 63  LNPEISLPKEANAMHKFICKNHRGIFKDSIAFVTLEPCSHQGKTPPCAKLFSDLGFKKVF 122

Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
           + V D + +V+  G  +L ++GI +   ++E EGK  L  +L  Q E+     L ++++ 
Sbjct: 123 ISVKDEN-KVASGGADFLKKQGIEVEFGILEEEGKKLLKPFLKWQKEQFKLFKLALSMNG 181

Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
                        ++  +S+   H +RA  D ++VG  T+  D P L  RL   +   P 
Sbjct: 182 SPF-------GKIVSNELSRTYAHKIRAVIDLLVVGGETIRKDRPILDARL--CKAKVPD 232

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
             IL      + D  I                 P+  +  R+    I             
Sbjct: 233 LCILSRQNLENFDKNI-----------------PLFKVPNRQIYTQIPSETKF------- 268

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
                    L+ EGG      F +   +D  ++++S  +  +  +  PL       NF  
Sbjct: 269 ---------LMYEGGENFLKIFKDE--MDMFLIFQSSSLNDKKNVTIPL-------NFKP 310

Query: 341 VRRDYFGSDVCLEY 354
           + R++ GSD    Y
Sbjct: 311 LYRNFLGSDTYGIY 324


>gi|20092885|ref|NP_618960.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanosarcina
           acetivorans C2A]
 gi|19918192|gb|AAM07440.1| riboflavin-specific deaminase [Methanosarcina acetivorans C2A]
          Length = 227

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 59/194 (30%), Positives = 96/194 (49%), Gaps = 9/194 (4%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             R  I +  A+S D  +       V I+G +   ++  LRAQ+DAI+VGIGTVLADDP 
Sbjct: 1   MDRPFIFINSAMSADGKLSTKERKQVKISGKLDFERMDELRAQADAIMVGIGTVLADDPS 60

Query: 207 LTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           LT         R    +  +P+RII+D   +  LD+ I K      +I V+ +       
Sbjct: 61  LTVKSPERKAARKAAGKSENPVRIIIDSAARTPLDADIFKKGEGLRIIAVSNSAPAEKIK 120

Query: 259 AFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
           +  +K   I   D + +L +L  +L   G+ +L+VEGGA +    +++ LVD +  +   
Sbjct: 121 SLEEKARVIKTGDFKVNLPELAVLLKEMGINTLMVEGGATLNWGMLSAGLVDEVYTFVGN 180

Query: 318 IVIGEGGIPSPLEE 331
           ++IG    P+  + 
Sbjct: 181 LIIGGKTAPTFTDG 194


>gi|320164473|gb|EFW41372.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Capsaspora
           owczarzaki ATCC 30864]
          Length = 593

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 105/223 (47%), Gaps = 16/223 (7%)

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
           + R   +R ++ L  A S D  I       + I+G  S    H LRA+   ILVGI TVL
Sbjct: 366 MLRDQAERPYVVLSYAQSLDGCIAAEKGKPLAISGEASLVMTHRLRAEHAGILVGINTVL 425

Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
           AD+P LT RL  +  ++P  I+LD H +  L +K++    L P II +   D        
Sbjct: 426 ADNPSLTVRL--VSGNNPQPIVLDTHLRFPLTAKLLTATPLKPWIITSLTADASREQRLV 483

Query: 262 KKNINIIYCD------CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN--SRLVDSIIL 313
           +    +I            L + L  L   G+ S++VEGGA+V  SF+N  S L+D +++
Sbjct: 484 ELGARVIRVPIDPATNSVSLVEALHALYRIGLPSVMVEGGASVIRSFLNHPSHLIDRLVV 543

Query: 314 YRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCL 352
             + +++   G  S L+    +         V+ + FG DV L
Sbjct: 544 TIAPVIL--AGTHSTLDGKPQQPVALPQLRNVKYEQFGRDVVL 584


>gi|269929210|ref|YP_003321531.1| 5-amino-6-(5-phosphoribosylamino)uracilreductase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269788567|gb|ACZ40709.1| 5-amino-6-(5-phosphoribosylamino)uracilreductase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 257

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 67/214 (31%), Positives = 95/214 (44%), Gaps = 11/214 (5%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
            R   T+  A + D  I      S  ++   S    H LRA+ DAILVGIGTVLADDP L
Sbjct: 32  DRPWATVAYAQTLDGRIATRSGDSRWVSCPDSLTFAHCLRAEHDAILVGIGTVLADDPRL 91

Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL-AFRKKNIN 266
           T RL  +   SPMR+ILD   +L LD+ +++       ++VT    P   L   R     
Sbjct: 92  TTRL--VAGPSPMRVILDSRLRLPLDAAVLRDGAADQTLVVTTAQAPPERLDCIRDTGAR 149

Query: 267 IIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           +I          DL      L   G+ +LL+EGGA    + + + +VD + +  +  ++G
Sbjct: 150 VIVATGHPGGGVDLADAFHQLRELGIRTLLIEGGARTITAALRAGVVDRLAVCIAPKILG 209

Query: 322 EG-GIPSPLEEGYLEKNFMCVRRDYF--GSDVCL 352
            G      L    L       RR     G D+ L
Sbjct: 210 AGIEAVGDLGIDRLADALPLQRRRVLLAGDDLIL 243


>gi|302382996|ref|YP_003818819.1| bifunctional deaminase-reductase domain protein [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193624|gb|ADL01196.1| bifunctional deaminase-reductase domain protein [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 210

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 67/210 (31%), Positives = 103/210 (49%), Gaps = 10/210 (4%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             IT K+A S D  IG +   S  ITG  ++ Q H LRA  DA+LVG+ TVLADDP LT 
Sbjct: 3   PRITWKVATSLDGRIGTSTGESQWITGPQAREQGHRLRATHDAVLVGVETVLADDPRLTV 62

Query: 210 RLN-GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
           RL  G     P+R++LD   +    +++   A    +I+ T   +P++        +   
Sbjct: 63  RLPDGETAADPLRVVLDSRLRTPPFARL---ARAGTLILTTR--EPIVIGEAEIVRVAGD 117

Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS- 327
                 ++ +L  L  RGV SL++EGG  VA  F+ + +VD+I  +R+ I++G  G P  
Sbjct: 118 SQGRPTVEAVLETLSARGVRSLMIEGGGRVAACFVTAGVVDAIEWFRAPILLGGDGRPGV 177

Query: 328 ---PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
               L        +  +  +  G D+   Y
Sbjct: 178 ASLALARLAHAPRYRRLAVEPMGDDLWERY 207


>gi|58039442|ref|YP_191406.1| bifunctional riboflavin biosynthesis protein RibD [Gluconobacter
           oxydans 621H]
 gi|58001856|gb|AAW60750.1| Bifunctional riboflavin biosynthesis protein RibD [Gluconobacter
           oxydans 621H]
          Length = 349

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 84/311 (27%), Positives = 136/311 (43%), Gaps = 40/311 (12%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEEARG 69
           A+  +    G T+ NPSV C ++  +G ++  GV    G PHAE  AL +A   G   + 
Sbjct: 23  AISQAVETFGATAPNPSVGCTLLDAEGRILTVGVHPRVGQPHAEAMALAQARAAGVLDQA 82

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG-----RGLQWLSQKGI 124
             A VTLEPC+H GR+PPC++ +    +R V +   DP+ + +G     R +       +
Sbjct: 83  RVALVTLEPCNHTGRTPPCSEALRNSPVREVWIGAADPNPQAAGGAARLREMPAGKHVVM 142

Query: 125 IVDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           + DR   ++     +  L  + +R V  R  I++K A+ ++  +          T   S 
Sbjct: 143 LADRPDMTDLARNCRALLAPFASRVVRHRPWISVKQALDENGSMVPPPGQKT-FTSPDSL 201

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSP-MRIILDPHFKLSLDSKIIK 238
              H LR  +DAI+ G+GTVLAD P  T R +   +  SP + ++ D H +L  D     
Sbjct: 202 TLAHRLRRATDAIITGVGTVLADRPRFTVRHVADHEGRSPRLLVVCDRHGRLPAD----- 256

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
                                  +    ++     DL  +  +L  RGV   ++E G A+
Sbjct: 257 -----------------WVSEMTEAGFEVLT--SSDLLSVPAMLAERGVNWAMIEAGPAL 297

Query: 299 AHSFINSRLVD 309
             S   + L D
Sbjct: 298 LASVAKAGLWD 308


>gi|209544013|ref|YP_002276242.1| riboflavin biosynthesis protein RibD [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531690|gb|ACI51627.1| riboflavin biosynthesis protein RibD [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 366

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 128/308 (41%), Gaps = 45/308 (14%)

Query: 22  VGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEE---ARGATAYVTLE 77
           +G T+ NP V C I+   G ++        G PHAE  AL +  E+    R + A VTLE
Sbjct: 30  MGATAPNPPVGCAILDARGEILTVAAHHRAGAPHAEALALRQCAEQGLMDRASVAVVTLE 89

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME------ 131
           PC+H GR+ PC++ I+   IR V V   DP+ RV+G G   L   G  V  + E      
Sbjct: 90  PCNHTGRTGPCSEAILASPIRTVWVGAADPNPRVAGGGAARLRAAGCAVYVLGEAGGELL 149

Query: 132 --------SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
                   +  +  +  ++      R+ +T+K AV  D  +      +   T   +    
Sbjct: 150 PDPFPELAAACRALIAPFVHWSRTGRAWLTVKQAVDADGSMIPPAGRTT-FTSDAALTLA 208

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR--IILDPHFKLSLDSKIIKTAL 241
           H LR  +DA++ G GTVLAD P L  R          R  ++ D   ++  D        
Sbjct: 209 HRLRRATDAVVTGSGTVLADRPGLDVRRVADHADRAARPLVVCDRRGRVPED-------- 260

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
                            A R +  ++  CD  D+ +L  +L   GV   LVE G A+  +
Sbjct: 261 --------------WRAAARGRGFDVRTCD--DITRLPAMLGADGVLWALVEAGPALLDA 304

Query: 302 FINSRLVD 309
              + L D
Sbjct: 305 LRAAGLWD 312


>gi|315636537|ref|ZP_07891773.1| riboflavin biosynthesis protein RibD [Arcobacter butzleri JV22]
 gi|315479186|gb|EFU69883.1| riboflavin biosynthesis protein RibD [Arcobacter butzleri JV22]
          Length = 334

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 83/374 (22%), Positives = 138/374 (36%), Gaps = 75/374 (20%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   D  +M  A+  +  H  LT  NP+V C+IVK+  ++        G PHAEV AL+ 
Sbjct: 1   MKIDDNFYMRLAIDEAWKHQLLTYPNPAVGCVIVKNQRLLAVEAHKEAGMPHAEVNALKT 60

Query: 63  AGEEAR---------------------------GATAYVTLEPCSHYGRSPPCAQFIIEC 95
           A  +                                 YVTLEPC+H G++P CA  + E 
Sbjct: 61  AYLKDNPNSILKTKNSSFDIHQFLLHNHNGFFNDCEIYVTLEPCNHIGKTPSCANLLKEL 120

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
             +RV++ V DP+ + +  GL+ L  + I V   +  E             + +S I  K
Sbjct: 121 KPKRVIISVKDPN-KQATGGLETLKNENIDVTLGIL-EKDGLNLILPFISWQNKSCIFFK 178

Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215
           +A + +  I         I+   +   VH LR + D +++G  +V  D P L  R   +Q
Sbjct: 179 MAQTLNGSIDGK------ISSNRALAYVHTLRDKIDLLVIGGNSVRIDKPTLDTRY--IQ 230

Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275
             +P   I   +     +  + K      +I                           DL
Sbjct: 231 GKNPDIFIYSKNKVFDNNIPLFKIPNRKVLI-------------------------SDDL 265

Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
            KLL          +++EG   +    +  R +D  IL  S  +              ++
Sbjct: 266 YKLLDYKF------IMIEGVYNLLDK-LKER-IDFFILIISPKIRKGQNA-----LNEID 312

Query: 336 KNFMCVRRDYFGSD 349
            +F  +  ++ G D
Sbjct: 313 LDFEIIHENFIGED 326


>gi|298674087|ref|YP_003725837.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanohalobium evestigatum Z-7303]
 gi|298287075|gb|ADI73041.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanohalobium evestigatum Z-7303]
          Length = 234

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 65/220 (29%), Positives = 101/220 (45%), Gaps = 13/220 (5%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
            R  I L  AVS D  I       V I+G     +V  L+ +SD ++VGIGTVLADDP L
Sbjct: 10  NRPFIFLNAAVSADGKISTKERKQVKISGDNDFERVDELKKESDGVMVGIGTVLADDPSL 69

Query: 208 TC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
           T         R N   + +P RI++D + +  +D+ I K      VI V++         
Sbjct: 70  TIKSENRKKYRKNNGLDENPARIVVDSNGRTPIDADIFKKGEGKRVIAVSKCAPEKKIKT 129

Query: 260 FRKK-NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
            ++K +I +   D  DLK L+  L   G+  L+VEGG+ +  S ++ +LVD I  +   I
Sbjct: 130 LKEKADIIVAGNDKVDLKILVEKLKDMGIEKLMVEGGSNLNWSLLSLKLVDEIHAFIGNI 189

Query: 319 VIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEY 354
           +IG    PS +      +        V  +     + + +
Sbjct: 190 IIGGSTAPSLVGGSGFPETDMLKLKLVDFEQMDDGLLVRW 229


>gi|315927631|gb|EFV06962.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 336

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 85/374 (22%), Positives = 151/374 (40%), Gaps = 79/374 (21%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
             +M+ AL  +  +  LT  NP+V C+I+ K+  ++        G  HAE+ A+  A + 
Sbjct: 13  EFYMNLALNEAWKYQFLTYPNPAVGCIILDKNEKILAIKAHEKAGLAHAELNAIAHAFKS 72

Query: 67  AR-------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
            R                          + A+VTLEPCSH G++PPCA+   E G +++ 
Sbjct: 73  LRPEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 132

Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
           + V D + +++  G ++L ++GI +   +++ EGK  L  +L  Q  +     L ++++ 
Sbjct: 133 ISVKDEN-KIASGGAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQKGQFKLFKLALSMNG 191

Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
                        ++  +S+   H +RA  D ++VG  T+  D P L  RL   +  +P 
Sbjct: 192 SPF-------GKIVSNELSRTYAHEIRAVIDLLVVGGETIRKDCPILDARL--CKAKAPN 242

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
             IL      + D  I                 P+  +  R+    I             
Sbjct: 243 LCILSRQNIDNFDKNI-----------------PLFKVPNRQIYTQIPSEAKF------- 278

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
                    L+ EGG      F +   +D  ++++S  +  E  +  PL       NF  
Sbjct: 279 ---------LMYEGGENFLKIFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKP 320

Query: 341 VRRDYFGSDVCLEY 354
           + R++ GSD    Y
Sbjct: 321 LYRNFLGSDTYGIY 334


>gi|307353941|ref|YP_003894992.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p
           yrimidine1-reductase [Methanoplanus petrolearius DSM
           11571]
 gi|307157174|gb|ADN36554.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p
           yrimidine1-reductase [Methanoplanus petrolearius DSM
           11571]
          Length = 226

 Score =  168 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 107/220 (48%), Gaps = 14/220 (6%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
             ++T+ +A+S D  +       V I+G     +V +L+A++DAI+VGIGTVLADDP LT
Sbjct: 2   FPYVTVNLAMSADGKLSTIERKQVKISGQDDFRRVDILKAENDAIMVGIGTVLADDPSLT 61

Query: 209 CRLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
            +   L+E         +P+RII+D   +    ++I+       +I V+++ DP      
Sbjct: 62  VKSPELKEKRLSSGRDENPVRIIVDSKARTPCSAEILHKGPGRRIIAVSKSADPKKIDEL 121

Query: 261 RKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
            K    +   D R DL+  L  +   G+ +L+VEGG ++  S     LVD        ++
Sbjct: 122 GKYAEIVQAGDERVDLRIFLAKIAEMGIETLMVEGGGSLIWSLFEDDLVDEYYTCIGNVI 181

Query: 320 IGEGGIPSPLEE-GYLEKN----FMCVRRDYFGSDVCLEY 354
           IG    P+P +  G++ +N          +   S V L++
Sbjct: 182 IGGASAPTPADGTGFIRENEFTKLEIASMEKIDSGVLLKW 221


>gi|154150347|ref|YP_001403965.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus
           Methanoregula boonei 6A8]
 gi|153998899|gb|ABS55322.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanoregula boonei 6A8]
          Length = 226

 Score =  168 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 97/222 (43%), Gaps = 14/222 (6%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             + + +A+S D  +       V I+G     +V  L+A  DA+ VGIGTVLADDP LT 
Sbjct: 3   PRVIVNVAMSADGKLSTRERRQVKISGNEDFARVDRLKAGCDAVAVGIGTVLADDPSLTV 62

Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
                   R    +   P+R+++D   +   D+ I+       VI V+E  DP    A R
Sbjct: 63  KSPDLRAERQREGRPEHPVRVVIDGRARTPPDASILVKGDGLRVIAVSERADPAKVEALR 122

Query: 262 KKNINIIYC-DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
            K   I    D  DL ++L  L   G+ SL+VEGG  +   FI + L D I  Y   IVI
Sbjct: 123 AKAAVITAGKDEVDLSRVLDELGQMGIRSLMVEGGGTLIAGFIRAGLADEIYTYIGSIVI 182

Query: 321 GEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGK 357
           G    P+  + G   +       +          V L ++ K
Sbjct: 183 GGKDAPTLADGGGWIRESDFARLVLADVTRIDDGVLLHWMVK 224


>gi|170084365|ref|XP_001873406.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650958|gb|EDR15198.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 237

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 105/229 (45%), Gaps = 13/229 (5%)

Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
           L  Y  +    R H+TL  A S D  I       + ++G  S    H LR+  DAILVGI
Sbjct: 10  LARYSQQPPSIRPHVTLTFAQSTDAKIAAIPGKQLILSGDESMQMTHWLRSMHDAILVGI 69

Query: 198 GTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK----TALLAPVIIVTENDD 253
           GT L DDP+L  R      + P  IILD H +LS   K++      +   P II T + D
Sbjct: 70  GTALNDDPQLNTRRLPPPHNLPRPIILDSHLRLSTSCKLLNNFRAGSGRRPWIISTPSQD 129

Query: 254 P---VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           P       A  +   NII     +    +  +L  L  R V SL+VEGGA V  SF ++ 
Sbjct: 130 PSWISRKDALEQAGANIIEIPSLNGRLSVPAVLQSLRDRDVRSLMVEGGATVIASFFSAS 189

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           +VD++I+  +  ++G+ G+   L   +  + F        G D    ++
Sbjct: 190 VVDTLIITTAPTLVGDNGLGYTLAGSH--QQFTLAHTQLLGKDTVTSWV 236


>gi|296112128|ref|YP_003622510.1| riboflavin-specific
           deaminase(diaminohydroxyphosphoribosylaminopyrimidine
           deaminase) [Leuconostoc kimchii IMSNU 11154]
 gi|295833660|gb|ADG41541.1| riboflavin-specific
           deaminase(diaminohydroxyphosphoribosylaminopyrimidine
           deaminase) [Leuconostoc kimchii IMSNU 11154]
          Length = 248

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 64/232 (27%), Positives = 108/232 (46%), Gaps = 11/232 (4%)

Query: 92  IIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSH 151
           +   G+RRVVV   DP+   +G+G+  L   G+ VD +  +        +      K+ +
Sbjct: 1   MSTWGLRRVVVGSIDPNPTTNGQGIALLKAAGVEVDVLNTNHSACLNPEFYYYFQSKKPY 60

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
           + LK+ VS+D  +         +T   +   VH  RA   AI++G  T+L D P+LT RL
Sbjct: 61  VQLKLVVSKDGFVSAGHHKRTKLTDARADIDVHQERAAKSAIMIGSQTLLVDQPQLTVRL 120

Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD 271
             +    PMR+++D   +L               II TEN      +AF  +N N+ Y  
Sbjct: 121 VAIDHQQPMRVVIDRRGRLQNSHFDFSN----RWIIYTEN------VAFANQNHNV-YLM 169

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
              L  +L  L  + + S+++EGG  + ++FI   L   +++Y +   +G G
Sbjct: 170 THGLAGVLRHLAQQNIQSVMIEGGPKLMNAFIAENLWQEMLIYETNATLGSG 221


>gi|219851937|ref|YP_002466369.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanosphaerula
           palustris E1-9c]
 gi|219546196|gb|ACL16646.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Methanosphaerula palustris E1-9c]
          Length = 231

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 61/210 (29%), Positives = 100/210 (47%), Gaps = 14/210 (6%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++ + +A+S D  +       V I+G I   +V  ++A SDAI+VGIGTVLADDP LT 
Sbjct: 3   PYVFVNVAMSADGKLSTRERRQVKISGSIDFRRVDQIKAGSDAIMVGIGTVLADDPSLTV 62

Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI-IVTENDDPVLALAF 260
                   R    ++ +P+R+++D   +  +++ I+       ++ +  E D+    L  
Sbjct: 63  KDPELKAGRAARGEDENPIRVVVDSRGRTPIEAAILNKGSGQRIVAVAGEADEKNRELLR 122

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
            K ++     +  DL  LL  L  RGV  L+VEGG  +  S I   LVD I  +   +VI
Sbjct: 123 EKADVITTGTESVDLPALLDALHARGVRRLMVEGGGTLIWSLIKEDLVDEIQTFIGNMVI 182

Query: 321 GEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
           G    P+  +            +D+ G D+
Sbjct: 183 GGKDAPTLADGEGF-----LAAQDFVGLDL 207


>gi|242309140|ref|ZP_04808295.1| riboflavin biosynthesis protein RibD [Helicobacter pullorum MIT
           98-5489]
 gi|239524181|gb|EEQ64047.1| riboflavin biosynthesis protein RibD [Helicobacter pullorum MIT
           98-5489]
          Length = 343

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/378 (19%), Positives = 144/378 (38%), Gaps = 71/378 (18%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA----- 63
           ++  A++ +      T  NP+V   I+ K+G ++        G PHAEV AL+ A     
Sbjct: 6   YLELAIKEAWKTQCQTLPNPAVGAAILDKNGKLLSINAHQEAGKPHAEVLALKNAYFHLT 65

Query: 64  ----------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                                  +    +T Y TLEPC H G++P CA  I   GI+ +V
Sbjct: 66  QDSAILSLQESHQIHQYLKQNAKDIFHNSTLYTTLEPCMHEGKTPSCASLIKSLGIKNLV 125

Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           V   DP+ + +  G ++L+   I V ++ E      L       +   + +  K +    
Sbjct: 126 VAAKDPNPK-AQGGAEYLANSNIKVTKIWEDSQFNTLAIKAQELLLPFNLLQKKGSFVLF 184

Query: 162 NMIGMAGCGSV--PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219
                         I+   ++  +H LR++ + +++   T+L D+P L  R   L+  +P
Sbjct: 185 KYACRLDGSIDGGQISSKETQIFMHNLRSKLNNLIISGKTILLDNPTLDSRFCSLENKNP 244

Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279
             I +     L+ +S   +TA             P+ A+  RK  I     +        
Sbjct: 245 PNITI-----LTKNSNFPQTA-------------PLFAIPNRKVEICHSIPNFSGF---- 282

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
                     ++ EGG  +  S +    +D ++++ S  +       +     + + +F 
Sbjct: 283 ----------VMCEGGNNLLESLLPH--IDMLLVFVSPTL------STYHLTHHFQAHFK 324

Query: 340 CVRRDYFGSDVCLEYIGK 357
            +     G+D+ L  + +
Sbjct: 325 LLHCQMIGNDIALWLLPQ 342


>gi|307720625|ref|YP_003891765.1| riboflavin biosynthesis protein RibD [Sulfurimonas autotrophica DSM
           16294]
 gi|306978718|gb|ADN08753.1| riboflavin biosynthesis protein RibD [Sulfurimonas autotrophica DSM
           16294]
          Length = 339

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 80/372 (21%), Positives = 136/372 (36%), Gaps = 76/372 (20%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            +M+ A+  +  + GLT  NP+V C IV + G ++        G PHAEV A++ A  + 
Sbjct: 7   FYMNLAISEAWKYQGLTYANPAVGCSIVGEHGELLAVEAHHKAGEPHAEVNAIKAAYYKL 66

Query: 68  ---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                                      +  + Y TLEPCSH G++P CA  I E GI+ V
Sbjct: 67  TQDEKILQLISSSQIHIYLLQNHNNIFKKCSLYSTLEPCSHVGKTPSCANLIAELGIKNV 126

Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
            V V+D +   +            I   + + + +  L  +     +K         ++ 
Sbjct: 127 FVGVEDFNTDAANGNTVLEKSGANISLHVEQQKCEDLLFPFKKFMSDKFVFFKWAQRLNG 186

Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
                     +  I+   S+  VH +R   D +++G  TV  D P L  RL  +   +P 
Sbjct: 187 -------TTDAGIISSAESRKNVHAMRDVCDLLVIGGNTVRNDRPTLDARL--VNGKAPD 237

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
            +IL          K   TA+            P+  +  RK  I   +    D      
Sbjct: 238 ILILSRE-------KEFDTAI------------PLFHVKNRKVYIESDFSRMND------ 272

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
                   ++++EG A +    ++  +VD  + Y +    G  G         +E  F  
Sbjct: 273 ------YKNIMIEGSAKMYE--LSRDIVDYYLCYLAPAFGGHDGFK------NIEDKFQI 318

Query: 341 VRRDYFGSDVCL 352
           +  D    D+ +
Sbjct: 319 LNADKEEEDIIM 330


>gi|218506245|ref|ZP_03504123.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
           [Rhizobium etli Brasil 5]
          Length = 137

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 80/133 (60%), Positives = 99/133 (74%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M V+  D  FM+AA+R SR H+G T+TNPSV CLIV+DG+++G+ VTA GG PHAE QAL
Sbjct: 1   MSVTPDDEGFMAAAIRLSRRHLGRTATNPSVGCLIVRDGVIVGQAVTAIGGRPHAEPQAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            EAG+ ARGATAYVTLEPCSH+G++PPCA+ +I  G+ RVV+ V DPD RVSGRG+  L 
Sbjct: 61  AEAGQLARGATAYVTLEPCSHHGKTPPCAEALIAYGVARVVISVTDPDPRVSGRGITMLR 120

Query: 121 QKGIIVDRMMESE 133
             GI VD      
Sbjct: 121 DAGIEVDTGALEA 133


>gi|58698891|ref|ZP_00373757.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58534587|gb|EAL58720.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 167

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/150 (44%), Positives = 91/150 (60%), Gaps = 1/150 (0%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FMS ALR +  ++G  + NP+V C+IVKDG ++  G T  GG PHAEV AL+ A + 
Sbjct: 3   DDHFMSIALRLAEKNLGNVAPNPAVGCVIVKDGTIVSEGYTGIGGRPHAEVVALQNAKDS 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
             GAT Y+TLEPC H+G + PC   II+  I+RVV+   DPD RVSGRG++ L + GI +
Sbjct: 63  THGATIYITLEPCCHHGVTGPCTAKIIKASIKRVVIATIDPDSRVSGRGMKALKEAGIEV 122

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
              +M+ E K     + T +   R  I  K
Sbjct: 123 EQGIMQKEAKELNVGFFTTKELHRPFIACK 152


>gi|325676732|ref|ZP_08156406.1| riboflavin biosynthesis protein RibD [Rhodococcus equi ATCC 33707]
 gi|325552514|gb|EGD22202.1| riboflavin biosynthesis protein RibD [Rhodococcus equi ATCC 33707]
          Length = 263

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 84/289 (29%), Positives = 134/289 (46%), Gaps = 35/289 (12%)

Query: 76  LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR--MMESE 133
           LEPC+H GR+ PC++ +I+ GI  V   V DP+   +  G   L    I V    + +  
Sbjct: 1   LEPCNHQGRTGPCSRALIDAGIAAVHYSVADPNP-AAAGGADTLRAARIEVTGGLLADDA 59

Query: 134 GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAI 193
            +  L A+L RQ   R H+T K A + D     A   S  ITG  ++ +VH  RA+ DAI
Sbjct: 60  ERGPLRAWLHRQRTGRPHVTWKFAATLDGRSAAADGTSQWITGPEARARVHADRARLDAI 119

Query: 194 LVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251
           +VG GTVLADDP LT R+    L  H P+R+++     +   ++++  A  AP ++    
Sbjct: 120 VVGTGTVLADDPWLTARMPDGSLAPHQPLRVVVGNRP-VPSTARVLDDA--APTLV---- 172

Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311
                                 D+ ++L+ L  +    +LVEGG  +A +F+ +  VD +
Sbjct: 173 ------------------LRTHDVGEILSALADQ--DDVLVEGGPRLAGAFLAAGAVDRV 212

Query: 312 ILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
             Y + +V+G G      + +        F     +  G D+ L  I +
Sbjct: 213 QAYIAPVVLGAGSHAVEDAGVSTITEALRFRRENVEVLGDDLLLNLIPR 261


>gi|83858225|ref|ZP_00951747.1| riboflavin biosynthesis protein RibD [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853048|gb|EAP90900.1| riboflavin biosynthesis protein RibD [Oceanicaulis alexandrii
           HTCC2633]
          Length = 210

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/210 (31%), Positives = 96/210 (45%), Gaps = 8/210 (3%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             +TLK+A S D  I +A   S  ITG  ++ +VH +RA  DAIL GIGTVLADDP++T 
Sbjct: 1   MQVTLKLATSLDGRIALANGQSQWITGPEARAEVHRMRASHDAILTGIGTVLADDPQMTA 60

Query: 210 RLNG-LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
           R +G L    P RI+LD   +L   ++I+      PV +                     
Sbjct: 61  RPDGALANRQPQRIVLDSQLRLPAYAEILTGE---PVWVFHTGGARSDLENVELFETEAD 117

Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS- 327
                    ++  L  RGV S+++E G  +A + I S  V  I  +R+  +IG  G    
Sbjct: 118 DGGRVSFSAVMQSLAARGVGSVMIEAGREIAGAAIRSDCVTRIEWFRAPRLIGAEGRACI 177

Query: 328 ---PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
               LEE  L   F  +     G+D+   Y
Sbjct: 178 AGLGLEELSLAPTFKRMEVRACGADLWETY 207


>gi|157738249|ref|YP_001490933.1| bifunctional riboflavin biosynthesis protein RibD [Arcobacter
           butzleri RM4018]
 gi|157700103|gb|ABV68263.1| bifunctional riboflavin biosynthesis protein RibD [Arcobacter
           butzleri RM4018]
          Length = 334

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 85/374 (22%), Positives = 142/374 (37%), Gaps = 75/374 (20%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           +   D  +M  A+  +  H  LT  NP+V C+IVK+  ++        G PHAEV AL+ 
Sbjct: 1   MKIDDNFYMRLAIDEAWKHQLLTYPNPAVGCVIVKNQRLLAVEAHKEAGMPHAEVNALKT 60

Query: 63  AGEEAR---------------------------GATAYVTLEPCSHYGRSPPCAQFIIEC 95
           A  +                                 YVTLEPC+H G++P CA  + E 
Sbjct: 61  AYLKDNPNSILKTKNSSFDIHQFLLQNHNGFFNDCEIYVTLEPCNHIGKTPSCANLLKEL 120

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
             +RV++ V DP+ + +  GL+ L  + I    +   +             + +S I  K
Sbjct: 121 KPKRVIISVKDPN-KQATGGLETLRNENI-NVTLDILKKDGLNLILPFISWQNKSCIFFK 178

Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215
           +A + +  I         I+   +   VH LR + D +++G  +V  D P L  R   +Q
Sbjct: 179 MAQTLNGSIDGK------ISSNRALAYVHTLRDKIDLLVIGGNSVRIDKPTLDTRY--IQ 230

Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275
             +P   I   +       K+  T +            P+  +  RK  I        DL
Sbjct: 231 GKNPDIFIYSKN-------KVFDTNI------------PLFKIPNRKVLI------SDDL 265

Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
            KLL          +++EG   +    +  R +D  IL  S  +              ++
Sbjct: 266 YKLLDYKF------IMIEGVYNLLDK-LKER-IDFFILIISPKIRKGQNA-----LNEID 312

Query: 336 KNFMCVRRDYFGSD 349
            +F  +  ++ G D
Sbjct: 313 LDFEIIHENFIGED 326


>gi|219848143|ref|YP_002462576.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chloroflexus
           aggregans DSM 9485]
 gi|219542402|gb|ACL24140.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chloroflexus
           aggregans DSM 9485]
          Length = 222

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 101/218 (46%), Gaps = 15/218 (6%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             R  +TL  A + D  +      S  I+   S +  H LRA SDAI+VG+GTVL DDP 
Sbjct: 1   MIRPRVTLSFAQTLDGRVAAVDGSSQWISSADSLHFCHSLRAASDAIMVGVGTVLRDDPR 60

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP-VLALAFRKKNI 265
           LT RL  ++   P+R+I+D   +    + +I+       ++      P       R+   
Sbjct: 61  LTVRL--VEGCDPVRVIVDSTLRTPPTAAVIRDGAARGTVLACTAAAPSERRTVLRELGA 118

Query: 266 NIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
            I+          DL  LL  L  RG+ S++VEGGA +    + + LVD++ +  + +++
Sbjct: 119 TILTLPATPDGKVDLVALLASLAERGIASIMVEGGACLITGLLRAHLVDAVAITIAPLIL 178

Query: 321 GEGGIPSPLEEGYLEKNFMC-----VRRDYFGSDVCLE 353
           G G  P+ + +  +           VR   +G DV LE
Sbjct: 179 GAG--PAAVGDLGITTLAQAIKLGDVRWTTYGVDVVLE 214


>gi|222823268|ref|YP_002574841.1| riboflavin biosynthesis protein [Campylobacter lari RM2100]
 gi|222538489|gb|ACM63590.1| riboflavin biosynthesis protein [Campylobacter lari RM2100]
          Length = 330

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 129/300 (43%), Gaps = 37/300 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
             +M+ A+  +  +  LT  NP+V C+I+ K+G ++        G  HAE++A+ +A +E
Sbjct: 4   EFYMNLAIDEAWKYQFLTYPNPAVGCVILDKNGKILSIKAHKEAGKAHAELEAVSKALKE 63

Query: 67  A-------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                                     +GATAYV+LEPC+H G++PPCA+   E G   V 
Sbjct: 64  LDPNLDLPQDANDLHEFICKNHQGLLKGATAYVSLEPCNHQGKTPPCAKLFSELGFSEVF 123

Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
           + + D   +++  G+++L  KGI +   + E   K  L  +L  Q        L ++++ 
Sbjct: 124 IAIKDEH-KLASGGVEFLKSKGIKVQIGICEKRAKELLKPFLKWQKSSFKIFKLALSLNG 182

Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
                        ++   S+   H LR++ D ++VG  T+  D P L  RL   Q  +P 
Sbjct: 183 -------SASGKIVSSKASRAYAHALRSKLDLLVVGGETIRHDRPILDARL--AQAKAPN 233

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
             IL      S D KI    +    I     ++    +    +N    + D  D+  + +
Sbjct: 234 LCILSHQNLESFDQKIPLFNVSNRKIFSNIPNEARFIMYEGGENFLKAFKDELDMLLIFS 293


>gi|159471802|ref|XP_001694045.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158277212|gb|EDP02981.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 121

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 59/119 (49%), Positives = 77/119 (64%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  ++  AL  ++   G T  NP+V C+IVKDG V+G G     G PHAEV AL  AG 
Sbjct: 1   QDRAYILKALELAKRAQGKTHPNPAVGCVIVKDGKVVGEGYHPKAGMPHAEVYALRGAGN 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            A GATAYVTLEPC+HYGR+PPC++ ++E  + RVVV V DP+  V+  G+  L + GI
Sbjct: 61  NAEGATAYVTLEPCNHYGRTPPCSRALVEAKVARVVVGVGDPNPLVAAEGIATLEKAGI 119


>gi|237755949|ref|ZP_04584538.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691898|gb|EEP60917.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 221

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 101/222 (45%), Gaps = 15/222 (6%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGC----GSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
            KR ++ +   V+ D  + ++        +      +   +H  RA+ D I+VG  T+  
Sbjct: 1   MKRPYVIIVSEVTVDGKLTLSKGVSSKEIMKFMDEEANRYLHETRAKVDGIMVGAETIRT 60

Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
           D+P LT R   +   +P RII      +  D+ I+K    +P IIVT    P   L    
Sbjct: 61  DNPYLTVRY--VSGKNPTRIIPTSTAYIPPDANILK--KDSPTIIVTTEKAPKERLKMLS 116

Query: 263 KNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
           + + +I    +  DL K++ IL  RG+ +L+VEGG+ +  + I + LVD I +     ++
Sbjct: 117 EKVEVIIAGKEEVDLIKMMDILYNRGIRNLMVEGGSTLNWNLIKNGLVDEIRIIHMPFIV 176

Query: 321 GEGGIPSPLEEGYLEKNFMCVR---RDYF--GSDVCLEYIGK 357
           G    P+ +     +     V+   R +F  GS +  E+  K
Sbjct: 177 GGTDTPTLVGGEGFKSLEEVVKLKLRAHFMRGSHLITEWEVK 218


>gi|225849717|ref|YP_002729951.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
           [Persephonella marina EX-H1]
 gi|225645135|gb|ACO03321.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
           [Persephonella marina EX-H1]
          Length = 221

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 101/222 (45%), Gaps = 15/222 (6%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVP----ITGFISKNQVHLLRAQSDAILVGIGTVLA 202
            +R +  +   V+ D  + +    S           +   +H LRA+ D I+VG  T+  
Sbjct: 1   MQRPYTIIVSEVTVDGKLTLRRGRSSKEIMQFMDDEANRYLHELRAKVDGIMVGAETIRT 60

Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
           D+P LT R   ++  +P RI+      + LD+ I+     AP IIVT    P   +   K
Sbjct: 61  DNPFLTVRY--VEGKNPTRIVPTSKADIPLDANIL--EKHAPTIIVTSESAPEEKVKALK 116

Query: 263 KNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
           + + +I    D  DL +++  L  +G+ +L+VEGG+ +  + I   LVD I L     ++
Sbjct: 117 EKVEVIISGKDQVDLIEMMDTLYRKGIKTLMVEGGSTLNWNLIKFGLVDEIRLIHMPFIV 176

Query: 321 GEGGIPSPL-EEGYLEKN--FMCVRRDYF--GSDVCLEYIGK 357
           G    P+ +  EG+   N       R +F  GS +  E+  K
Sbjct: 177 GGEDTPTLVGGEGFYSLNDVVKTKLRAHFMRGSHLITEWEIK 218


>gi|188996174|ref|YP_001930425.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931241|gb|ACD65871.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 221

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 15/222 (6%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGC----GSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
            KR ++ +   V+ D  + ++        +      +   +H  RA+ D I+VG  T+  
Sbjct: 1   MKRPYVIIVSEVTVDGKLTLSKGVSSKEIMKFMDEEANRYLHETRAKVDGIMVGAETIRT 60

Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
           D+P LT R   +   +P RII      + LD+ I+K    +P IIVT    P   +    
Sbjct: 61  DNPYLTVRY--VSGKNPTRIIPTSTADIPLDANILK--KDSPTIIVTTEKAPEERVKALS 116

Query: 263 KNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
           + + +I    +  DL K++ IL  +G+ +L+VEGG+ +  + I + LVD I +     ++
Sbjct: 117 EKVEVIVAGKEEVDLIKMMDILYNKGIRNLMVEGGSTLNWNLIKNGLVDEIRIIHMPFIV 176

Query: 321 GEGGIPSPLEEGYLEKNFMCVR---RDYF--GSDVCLEYIGK 357
           G    P+ +     +     V+   R +F  GS +  E+  K
Sbjct: 177 GGTDTPTLVGGEGFKSLEEVVKLKLRAHFMRGSHLITEWEVK 218


>gi|118576931|ref|YP_876674.1| riboflavin specific deaminase [Cenarchaeum symbiosum A]
 gi|118195452|gb|ABK78370.1| riboflavin specific deaminase [Cenarchaeum symbiosum A]
          Length = 217

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 69/213 (32%), Positives = 103/213 (48%), Gaps = 10/213 (4%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
           + L  A S D  I      S  I+      +VH LR++ D I+VG GTV++DDP LT R 
Sbjct: 1   MILGAAASVDGRIATRTGDS-GISSARDLRRVHRLRSEVDGIMVGRGTVVSDDPLLTARH 59

Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL-ALAFRKKNINIIYC 270
            G    +P+RII+DP  +L  +S+I +TA   P I+      P          ++ ++  
Sbjct: 60  RG--GRNPVRIIIDPLGRLPPESQIARTAGRIPTIVACTGRIPPRNRRRLEGLSVEVLEA 117

Query: 271 --DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-IPS 327
             D  DL  LL  L  RG+ ++L+EGGA     FI   LVD +I+  + +VIG  G +P 
Sbjct: 118 GTDEMDLLVLLRALYRRGLRTILLEGGARTNWGFIERGLVDEMIITIAPVVIGGTGSVPL 177

Query: 328 PLEEGYL---EKNFMCVRRDYFGSDVCLEYIGK 357
               G+     + F        G +V L Y+ +
Sbjct: 178 VGGRGFAGVHRRAFRLKEALRQGDEVVLHYVKR 210


>gi|21672711|ref|NP_660778.1| riboflavin biosynthesis protein RibD [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25091137|sp|Q8K9A3|RIBD2_BUCAP RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|21623354|gb|AAM67989.1| riboflavin biosynthesis protein RibD [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 217

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 56/216 (25%), Positives = 91/216 (42%), Gaps = 17/216 (7%)

Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE- 216
           +S D  I M    S  IT   S+  V   RA+S AIL    T+L DDP L  R     + 
Sbjct: 1   MSIDGRIAMKNGESRWITSKESREDVQKFRAKSSAILTSSATILNDDPLLNVRYKKFDKN 60

Query: 217 ----------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
                       P+RII+D   ++    KII+T     ++++    D  +     K+ I 
Sbjct: 61  TLSTFPKKIFQQPIRIIIDSKNRVKKSHKIIQTKE--KILLMRLKLDKEIWPENTKQIII 118

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
             Y +  DL  +L  L    + +L +E G+ ++  F+   L+D II+Y +  ++G    P
Sbjct: 119 KPYKENIDLLCVLKFLGNLEINNLWIEAGSTLSGCFLKLELIDEIIIYIAPKILGHEAKP 178

Query: 327 SPLEEGYLE----KNFMCVRRDYFGSDVCLEYIGKN 358
             +    L+      F        G D+ ++   KN
Sbjct: 179 LFIFNNQLKLFDCLKFDFKDIRQIGPDIRIKLEPKN 214


>gi|325968187|ref|YP_004244379.1| 2, 5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Vulcanisaeta moutnovskia 768-28]
 gi|323707390|gb|ADY00877.1| 2, 5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Vulcanisaeta moutnovskia 768-28]
          Length = 219

 Score =  165 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 58/218 (26%), Positives = 93/218 (42%), Gaps = 14/218 (6%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             + ++ +  A S D  I         ++      ++H +RA  DAI+VG  TV+ DDP 
Sbjct: 1   MPKPYVIIVSAASIDGRIASKTG-YSRLSCPFDLRRLHEVRASVDAIMVGANTVINDDPS 59

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
           LT R       +P+R+I+D   ++ L +K+I       +I+ TE  D           + 
Sbjct: 60  LTPRYV-KAIKNPIRVIIDGKLRIPLTAKVITNKEAPTIIVTTEQSDRNKTAQLMNMGVE 118

Query: 267 IIYC--DCRDLKKLLTILV-GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           +     +  +L+ +L  L   +GV  +LVEGG  +    I   + D I L  S  V G G
Sbjct: 119 VWVMGKERVNLRDVLEKLFTEKGVKRVLVEGGGHLNWELIKEEIADEIRLTISPYVFGAG 178

Query: 324 -------GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
                  G P+ +E   L      V     G +V L+Y
Sbjct: 179 TSFIEGEGYPTTMEGPRL--RLKSVNICECGQEVVLDY 214


>gi|57168828|ref|ZP_00367959.1| riboflavin biosynthesis protein (ribG) [Campylobacter coli RM2228]
 gi|305432431|ref|ZP_07401593.1| riboflavin biosynthesis protein RibD [Campylobacter coli JV20]
 gi|57019875|gb|EAL56558.1| riboflavin biosynthesis protein (ribG) [Campylobacter coli RM2228]
 gi|304444470|gb|EFM37121.1| riboflavin biosynthesis protein RibD [Campylobacter coli JV20]
          Length = 326

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 150/373 (40%), Gaps = 79/373 (21%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            +M+ AL  +  +  LT  NP+V C+I+ K+  ++        GC HAE+ A+  A    
Sbjct: 4   FYMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGCAHAELNAIAHAFTNL 63

Query: 68  -------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                                    + + A+VTLEPCSH G++PPCA+   E G +++ +
Sbjct: 64  NPEISLPQEANAMHEFICKNHRGIFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIFI 123

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
            V D +  ++ +G ++L ++G+ ++  +++ EGK  L  +L  Q  +     L ++++  
Sbjct: 124 SVKDEN-EIASKGAEFLKKQGVEIEFGVLKDEGKKLLKPFLKWQKGQFKLFKLALSMNGS 182

Query: 162 NMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR 221
                       ++  +S+   H +R+  D +++G  T+  D P L  RL   +  +P  
Sbjct: 183 PF-------GKIVSNELSRTYAHKIRSVIDLLVLGGETIRKDRPILDARL--CKGKAPNL 233

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
            IL      + D  I   ++    I     +                             
Sbjct: 234 CILSHQNLENFDKSIPLFSVPHRQIYTQIPNKAKF------------------------- 268

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341
                   L+ EGG      F +   +D  ++++S  +  E  +  PL       NF  +
Sbjct: 269 --------LMYEGGENFLKKFKDE--MDMFLIFQSSSLNDEKNVTMPL-------NFKPL 311

Query: 342 RRDYFGSDVCLEY 354
            R++ GSD    Y
Sbjct: 312 YRNFLGSDTYGIY 324


>gi|162146949|ref|YP_001601410.1| riboflavin biosynthesis protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161785526|emb|CAP55097.1| Riboflavin biosynthesis protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 366

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 127/308 (41%), Gaps = 45/308 (14%)

Query: 22  VGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEE---ARGATAYVTLE 77
           +G T+  P V C I+   G ++        G PHAE  AL +  E+    R + A VTLE
Sbjct: 30  MGATAPKPPVGCAILDARGEILTVAGHHRAGAPHAEALALRQCAEQGLMDRASVAVVTLE 89

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME------ 131
           PC+H GR+ PC++ I+   IR V V   DP+ RV+G G   L   G  V  + E      
Sbjct: 90  PCNHTGRTGPCSEAILASPIRTVWVGAADPNPRVAGGGAARLRAAGCAVYVLGEAGGELL 149

Query: 132 --------SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
                   +  +  +  ++      R+ +T+K AV  D  +      +   T   +    
Sbjct: 150 PDPFPELAAACRALIAPFVHWSRTGRAWLTVKQAVDADGSMIPPAGRTT-FTSDAALTLA 208

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR--IILDPHFKLSLDSKIIKTAL 241
           H LR  +DA++ G GTVLAD P L  R          R  ++ D   ++  D        
Sbjct: 209 HRLRRATDAVVTGSGTVLADRPGLDVRRVADHADRAARPLVVCDRRGRVPED-------- 260

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
                            A R +  ++  CD  D+ +L  +L   GV   LVE G A+  +
Sbjct: 261 --------------WRAAARGRGFDVRTCD--DITRLPAMLGADGVLWALVEAGPALLDA 304

Query: 302 FINSRLVD 309
              + L D
Sbjct: 305 LRAAGLWD 312


>gi|213421646|ref|ZP_03354712.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 182

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 13/184 (7%)

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +L R      ++ LK+  S D    MA   S  IT   ++  V  LRAQS AIL    TV
Sbjct: 1   FLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQRLRAQSHAILTSSATV 60

Query: 201 LADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           LADDP LT R   L               P+RI++D   +++   +I++       I  T
Sbjct: 61  LADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAHRIVQQPGE-TWIART 119

Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
           + D      + R  ++   +    DL  L+  L  + + S+ VE G  +A + + + LVD
Sbjct: 120 QEDSHAWPDSVRTISV-PAHNGHLDLVVLMMQLGRQQINSIWVEAGPGLAGALLQAGLVD 178

Query: 310 SIIL 313
            +I+
Sbjct: 179 ELIV 182


>gi|260551098|ref|ZP_05825302.1| riboflavin biosynthesis protein RibD [Acinetobacter sp. RUH2624]
 gi|260405865|gb|EEW99353.1| riboflavin biosynthesis protein RibD [Acinetobacter sp. RUH2624]
          Length = 113

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 48/99 (48%), Positives = 67/99 (67%)

Query: 1  MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
          M     D  +M  A+  ++  +  T  NP+V C+IVKD  VIG G     G PHAEV AL
Sbjct: 1  MSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDNQVIGEGFHPKAGQPHAEVFAL 60

Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
           +AGE+A+GATAYVTLEPC+HYGR+PPCA+ +++  +++
Sbjct: 61 RQAGEQAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKK 99


>gi|83859882|ref|ZP_00953402.1| riboflavin biosynthesis protein RibD [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852241|gb|EAP90095.1| riboflavin biosynthesis protein RibD [Oceanicaulis alexandrii
           HTCC2633]
          Length = 195

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 72/186 (38%), Positives = 102/186 (54%), Gaps = 7/186 (3%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           PV++ D R+M  AL  +   +G T+ NPSV C+IV+DG +IG   TA GG PHAE QALE
Sbjct: 5   PVTAEDLRYMDTALALAYARLGQTAPNPSVGCIIVRDGRIIGAAATAPGGRPHAEPQALE 64

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +AG  A GAT YVTLEPC+HYG++PPCA+ +I      VV+   DP   V+GRG+  L+ 
Sbjct: 65  QAGARAEGATVYVTLEPCAHYGKTPPCAEALIAAHPAEVVIACRDPFEHVAGRGMTMLAD 124

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
            GI +++ + E++       +  R    R  +        D   G+     V   G  + 
Sbjct: 125 AGIAVLEGVREADAIALNAGFFERLKTGRPLLAS------DPRTGLFDADLVLQAGEDTG 178

Query: 181 NQVHLL 186
             +  L
Sbjct: 179 AALDRL 184


>gi|315639223|ref|ZP_07894385.1| riboflavin biosynthesis protein RibD [Campylobacter upsaliensis
           JV21]
 gi|315480549|gb|EFU71191.1| riboflavin biosynthesis protein RibD [Campylobacter upsaliensis
           JV21]
          Length = 327

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 84/362 (23%), Positives = 144/362 (39%), Gaps = 77/362 (21%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
             +MS AL+ +  +  LT  NP+V C+I+ K+  ++        G  HAE+ A++EA + 
Sbjct: 3   EFYMSLALKEAWKYQFLTYPNPAVGCVILDKNNQILSIKAHEKQGEAHAELNAIKEALKL 62

Query: 67  AR-------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
            +                          ATA+VTLEPC+H G++PPCA+       ++V 
Sbjct: 63  LKPEFNFPKEPNALHEFILTNHQKLLQNATAFVTLEPCAHQGKTPPCAKLFSTLEFKKVF 122

Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
           V V D + +++  G ++L Q GI +   ++E EG+  L  +L  Q        L ++++ 
Sbjct: 123 VSVKDEN-QIASGGAEFLRQNGILVEMGILEKEGRELLKPFLKWQKGAFKLFKLALSLNG 181

Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
             +          ++   S+   H +R+  D ++VG GT+  D P L  RL G    +P 
Sbjct: 182 SAL-------GKFVSNETSRIYAHQIRSIIDLLVVGGGTLRKDRPILDSRLCG--GKAPN 232

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
             IL      S D  I    +    I      +                           
Sbjct: 233 LCILSHQNLESFDKTIPAFNVKNRQIFTQIPSNAKF------------------------ 268

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP-----SPLEEGYLE 335
                    L+ EGGA    SF N   +D  +++ +     E  +       PL +G  +
Sbjct: 269 ---------LMYEGGAEFLKSFKNQ--MDMFLIFHNAKFNQEENVKLDLELRPLFKGNFK 317

Query: 336 KN 337
           ++
Sbjct: 318 ED 319


>gi|15605930|ref|NP_213307.1| riboflavin specific deaminase [Aquifex aeolicus VF5]
 gi|2983103|gb|AAC06708.1| riboflavin specific deaminase [Aquifex aeolicus VF5]
          Length = 224

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 60/223 (26%), Positives = 103/223 (46%), Gaps = 13/223 (5%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVP----ITGFISKNQVHLLRAQSDAILVGIGTVLA 202
            +R ++ +   VS D  + +    S      +    +   +H +RA+ D I+VG  TV  
Sbjct: 1   MERPYVIIVSEVSVDGKLTLYRGASSKELMSLMDEEAYKYLHEIRAKVDGIMVGCETVRT 60

Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
           D+P LT R    +  +P+RII      + LD+ ++ T     +I  TE          ++
Sbjct: 61  DNPSLTVRY--AKGKNPVRIIPCSTANVPLDANVLNTKEAPTIIATTERAPKERLEKIKE 118

Query: 263 KNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
               +I    +  D  KLL  L  RG+ SL+VEGGA++   F+  R+VD I L    +++
Sbjct: 119 LGAEVIVVGDELVDFDKLLPELYRRGIKSLMVEGGASINWEFVRRRVVDEIRLIHLPVIV 178

Query: 321 GEGGIPSPLEEGYLE--KNFMCVR-RDYF--GSDVCLEYIGKN 358
           G   +P+ +     +  KN + +R R +F  G  +  E+   N
Sbjct: 179 GGENVPTLVGGEGFKKLKNLLHLRLRSHFVRGKQLITEWEVVN 221


>gi|284176227|ref|YP_003406504.1| 2,5-diamino-6-hydroxy-4-(5- phosphoribosylamino)pyrimidine
           1-reductase [Haloterrigena turkmenica DSM 5511]
 gi|284017884|gb|ADB63831.1| 2,5-diamino-6-hydroxy-4-(5- phosphoribosylamino)pyrimidine
           1-reductase [Haloterrigena turkmenica DSM 5511]
          Length = 220

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 94/222 (42%), Gaps = 15/222 (6%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            H+ +  A S D  +       + I+G     +V  LRA SDA++VG+GTVLADDP LT 
Sbjct: 1   MHVVVNAATSADGKLSSRRREQIAISGEADFERVDRLRAYSDAVVVGVGTVLADDPHLTV 60

Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
                   RL   +   P R+++D   +   D+ ++  A  A   +      PV +    
Sbjct: 61  KDESLCDERLERGEPKQPARVVVDSKGRTPTDAAVLDDA--ATTYVCLSEAAPVGSRMDL 118

Query: 262 KKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
             +  ++    D  DL +    L  +G+  ++VEGG  +  S   + LVD + L+    V
Sbjct: 119 VDHAELVTAGNDRVDLLRAFAALEEQGLERIMVEGGGELIFSLFEAGLVDELRLFVGPKV 178

Query: 320 IGEGGIPSPLEEGYLEKNFMCV---RRDYFGSDVCLEYIGKN 358
           IG    P+  +     + F  +     +       L +  ++
Sbjct: 179 IGGRDAPTLADGEGFVEEFPLLHLEDLERLDDGALLRWTVED 220


>gi|118474836|ref|YP_892622.1| riboflavin biosynthesis protein RibD [Campylobacter fetus subsp.
           fetus 82-40]
 gi|118414062|gb|ABK82482.1| riboflavin biosynthesis protein RibD [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 336

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 75/284 (26%), Positives = 115/284 (40%), Gaps = 42/284 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE- 65
             +M+ A+  +     LT  NP+V C+I  K+G ++        G PHAE+ A++ A E 
Sbjct: 4   EYYMNIAINKAWEFQFLTYPNPAVGCVITGKNGEILSINAHEKAGMPHAELNAIKYALEM 63

Query: 66  ----------------------------EARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                                          G+TAYVTLEPCSH GR+PPCA  + E G 
Sbjct: 64  KNPAFKQDFDEIKDTNELYNFIMQNHSNLLNGSTAYVTLEPCSHQGRTPPCANLLKELGF 123

Query: 98  RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKI 156
           ++V++   D     +  G Q L   GI     +  E     L  +L   +   S   + +
Sbjct: 124 KQVIIGAIDS-SENAKGGEQILKNSGIKTKIGVCKEKADELLEPFLAWSLGNFSFFKIAL 182

Query: 157 AVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE 216
                   G+A  G   I+   S+   H LR+  D +++G  TV  D P L  RL     
Sbjct: 183 TQ-----NGIASGGV--ISNLQSRTHSHKLRSLVDMLVIGGNTVRTDRPLLDTRLV-KNG 234

Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
            +P  ++     K      +    +L   +IV+ + D V    F
Sbjct: 235 KNPDILLYSKESKFDTTIPLFN--ILDRRVIVSNSLDAVFERKF 276


>gi|257413677|ref|ZP_04743810.2| riboflavin biosynthesis protein RibD [Roseburia intestinalis L1-82]
 gi|257202725|gb|EEV01010.1| riboflavin biosynthesis protein RibD [Roseburia intestinalis L1-82]
          Length = 173

 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 52/140 (37%), Positives = 79/140 (56%), Gaps = 4/140 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
            R+M  A+  +    G T TNP V  ++VK+  +IG G     G  HAE +AL +    G
Sbjct: 34  ERYMRRAMELAELGRGWTKTNPVVGAVLVKEDRIIGEGYHKKFGGLHAEREALADCRSRG 93

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E+  GA  YVTLEPC HYG++PPC Q +IE GI  V V  +D +  V+G G++ L ++GI
Sbjct: 94  EDPAGADLYVTLEPCCHYGKTPPCTQAVIEAGISHVFVGAEDINPLVAGAGIRQLREQGI 153

Query: 125 -IVDRMMESEGKIFLHAYLT 143
            + + +++ E +     +  
Sbjct: 154 LVTEGVLQEECEYQNRVFFH 173


>gi|163782963|ref|ZP_02177958.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881643|gb|EDP75152.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 223

 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 13/221 (5%)

Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVP----ITGFISKNQVHLLRAQSDAILVGIGTV 200
            +E+R ++ +   VS D  + +    S      +    +   +H +RA+ D I+VG  TV
Sbjct: 1   MMEQRPYVIIVSEVSIDGKLTLYRGASSKELMSLMDEEAYRYLHEIRAKVDGIMVGCETV 60

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
             D+P LT R   ++  +P RII      + LD+ ++ T     +I  TE  D       
Sbjct: 61  RTDNPSLTVRY--VKGKNPTRIIPCSTANVPLDANVLNTEDAPTIIATTERADKERVKKI 118

Query: 261 RKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
            +K   ++    +  D   LL  L   G+ +L+VEGGA++   F+  + VD I L    +
Sbjct: 119 EEKGAKVVVAGDELVDFDLLLPKLYEMGIKTLMVEGGASINWEFVRRKKVDEIRLIHLPV 178

Query: 319 VIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354
           ++G   +P+ +     +K     +         G+ +  E+
Sbjct: 179 IVGGENVPTLVGGEGFKKLKDILHLRLRSHFKRGNQLITEW 219


>gi|154173746|ref|YP_001408781.1| riboflavin biosynthesis protein RibD [Campylobacter curvus 525.92]
 gi|153793001|gb|EAT99582.2| riboflavin biosynthesis protein RibD [Campylobacter curvus 525.92]
          Length = 376

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/282 (23%), Positives = 109/282 (38%), Gaps = 59/282 (20%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA------ 59
           D  +M  AL  +     LT  NP+V C+I  ++G ++        GC HAE  A      
Sbjct: 3   DEFYMQLALNKAWEFQILTYPNPAVGCVITDRNGKILSCEAHKKAGCLHAEPMAVFFALC 62

Query: 60  ---------------------------LEEA---------------GEEARGATAYVTLE 77
                                      L+ A                   +GA AYVTLE
Sbjct: 63  ALSGEFLAKFLDAYGAKFSQNFSGLDELKSAELEPNFTYEFILAYHANLLKGAKAYVTLE 122

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKI 136
           PCSH+GR+PPCA+ +       VV+   D + +++  G + L   G+ +   +++ +   
Sbjct: 123 PCSHHGRTPPCAELLKRLNFGEVVIGARDEN-KIASGGAEILKNSGVRVKFDVLKDKALE 181

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
            +  +        S + + ++       G+A  G   I+G  S+  VH LR+  D +++G
Sbjct: 182 LIAPFRAWHDGNFSFLKIALSA-----NGVANGGV--ISGEQSRTHVHKLRSVIDLLVIG 234

Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
             TV  D P L  RL      +P  +I            + K
Sbjct: 235 GNTVRTDRPRLDTRLING-GENPDVLIFSRRQNFDESIPLFK 275


>gi|88603813|ref|YP_503991.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanospirillum
           hungatei JF-1]
 gi|88189275|gb|ABD42272.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Methanospirillum hungatei JF-1]
          Length = 225

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 101/206 (49%), Gaps = 13/206 (6%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++ + +AVS D  +       V I+G    ++V  ++A  DAI+VGIGTVLADDP LT 
Sbjct: 3   PYVIVNVAVSADGKLSTRERRQVKISGKEDFDRVDEIKAGCDAIMVGIGTVLADDPSLTI 62

Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
                   R+   +   P+RI++D   +   D+KI+       +I V+    P   ++  
Sbjct: 63  KSADRIAERVRNGKPEHPVRIVVDSQARTPPDAKILHKGPGLRIIAVSL-AAPEENISAL 121

Query: 262 KKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
           K +  II       DL  LLT L  +G+  L+VEGG  +    +++ LVD + ++   I+
Sbjct: 122 KNHAEIIQAGEVTVDLPVLLTKLAEKGIKRLMVEGGGTLIWGMLSAGLVDELTMFVGNII 181

Query: 320 IGEGGIPSPLEEGY--LEKNFMCVRR 343
           IG    P+  +     LE +F  + R
Sbjct: 182 IGGKDAPTLADGTGYVLESDFPVLER 207


>gi|32266337|ref|NP_860369.1| riboflavin biosynthesis protein RibD [Helicobacter hepaticus ATCC
           51449]
 gi|32262387|gb|AAP77435.1| riboflavin biosynthesis protein RibD [Helicobacter hepaticus ATCC
           51449]
          Length = 348

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 84/382 (21%), Positives = 143/382 (37%), Gaps = 67/382 (17%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
           M ++S D  F+      +     L   NPSV  L+V K G ++ + V    G PHAEV A
Sbjct: 1   MFLNSSDELFLHYCCSLAWESQTLALPNPSVGALVVDKYGQILSQAVHKVAGSPHAEVLA 60

Query: 60  LEEAGEEARG---------------------------ATAYVTLEPCSHYGRSPPCAQFI 92
           ++ A     G                            T YV+LEPC+HYG++PPC+Q +
Sbjct: 61  IQAAYHTLSGDDEIVKLHKSKDIHTYLLAHHNGLFKECTLYVSLEPCNHYGKTPPCSQLL 120

Query: 93  IECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHI 152
              G  RV +  +D    ++  G  +LSQ GI V  +        L    T  +     +
Sbjct: 121 SSLGFSRVCIATNDTHA-LAAGGANYLSQVGINVCYIQSP----TLQHLATHLLMPFEIL 175

Query: 153 TLKIAVSQDNMIGMAGCGSVP--ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
                 +   +            I+  IS+   H  R+  D I V   T+  D+P+L  R
Sbjct: 176 RKNGRFALFKLALRLDGSYTQGRISSDISRQFTHNQRSVCDWICVSGNTLRNDNPQLNAR 235

Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270
              L  ++               + + +  +++  +     D+   +     KN      
Sbjct: 236 YATLPYNN---------------THLPQVGIISRTL--HRFDEIESSNIALSKNRVHFIN 278

Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           D    + L      +G   ++VEGG  + HS      +D I+++++     + G      
Sbjct: 279 DLSHFESL------QGF--VIVEGGWDLLHSLKE--FIDMILIHQA--FACDKG---ECL 323

Query: 331 EGYLEKNFMCVRRDYFGSDVCL 352
              L+ +F  +     G D+ L
Sbjct: 324 THTLKTHFKLLHTMRLGEDMAL 345


>gi|269796889|ref|YP_003316344.1| riboflavin biosynthesis protein RibD [Sanguibacter keddieii DSM
           10542]
 gi|269099074|gb|ACZ23510.1| riboflavin biosynthesis protein RibD [Sanguibacter keddieii DSM
           10542]
          Length = 372

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 95/375 (25%), Positives = 132/375 (35%), Gaps = 63/375 (16%)

Query: 1   MPVSSFDARF------------MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT 47
           MP    D R             MS AL  +R      S  P   C+++  DG V+G   T
Sbjct: 1   MPAEPSDTRATRPFRRHLEDAAMSRALELAREDRLAASLGPRGGCVLLGADGTVLGEART 60

Query: 48  AYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGR----------SPPCAQFIIECGI 97
                 HA  QAL EAG  A+GATA VTLEPC   G             PCAQ +++ G+
Sbjct: 61  DRVARVHATAQALAEAGHRAQGATAVVTLEPCCLGGDARATGPSPLPHGPCAQALVDAGV 120

Query: 98  RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
           RRVVV   DPD   SG         G  + R    E      A     +      T  + 
Sbjct: 121 RRVVVAHLDPDPGTSG---------GAALLRGAGVEVVAASAAAADEALSLNRAWTFGVQ 171

Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL--Q 215
             +  +  +   G            +  LRAQ D ++V    VLA D  L          
Sbjct: 172 AGRPLVTWVVEGGGSAGGPNP---DLDRLRAQVDTLVVSTWAVLAHDVSLAALGPDGHPA 228

Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275
              P+R+++    +L     I                               ++   RD 
Sbjct: 229 ARQPLRVVVGTR-ELDPGLPIFDGPGRT------------------------LHFATRDP 263

Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI-PSPLEEGYL 334
              L  +   G   +L+ GG A+A  F+ + LVD II + +     +GG+  + L  G L
Sbjct: 264 ALTLAAIYDLGGRHVLLSGGTALAAEFLRAGLVDEIISHVTPEWTSQGGVGATDLGVGEL 323

Query: 335 EKNFMCVRRDYFGSD 349
                 V       D
Sbjct: 324 PDTTRLVDVRLVDDD 338


>gi|124485759|ref|YP_001030375.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Methanocorpusculum labreanum Z]
 gi|124363300|gb|ABN07108.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Methanocorpusculum labreanum Z]
          Length = 225

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 99/222 (44%), Gaps = 14/222 (6%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++ +  A+S D  +         I+G     +V  LRA SDAI+VGIGTVL+DDP L  
Sbjct: 3   PYVIINAAMSADGKLATRERKQTKISGHDDFLRVDRLRADSDAIMVGIGTVLSDDPSLRL 62

Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
                   R    ++  PMR+++D   K+  D  + K  L   VI V+E        A R
Sbjct: 63  KSEEHAGMRKANGKDPHPMRVVIDSTAKMPADGDMFKKGLGRVVIFVSEKAQKEKCDALR 122

Query: 262 KKNINIIYC-DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
           +K   I    D  DL+ +L  L   GV  L+VEGG+ +  SF++S L D I +Y   ++I
Sbjct: 123 EKATVISAGRDSVDLEIVLDELSKLGVEKLMVEGGSTLLWSFMSSGLFDEIRIYIGALII 182

Query: 321 GEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIGK 357
           G    P+  +                  +     V L ++ K
Sbjct: 183 GGKDAPTFADGQGFTDPDDFTRLTLKDIERIDDGVLLTWVKK 224


>gi|302545542|ref|ZP_07297884.1| riboflavin biosynthesis, RibD domain-containing protein
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302463160|gb|EFL26253.1| riboflavin biosynthesis, RibD domain-containing protein
           [Streptomyces himastatinicus ATCC 53653]
          Length = 238

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 72/230 (31%), Positives = 104/230 (45%), Gaps = 19/230 (8%)

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
               E R ++  K A + D  I  A   S  IT   S+ +VH LRA   A +VG GT  A
Sbjct: 12  WHTAEGRPYVVYKYAATLDGRIAAADSTSQWITSAESRTEVHALRAACQATVVGSGTQQA 71

Query: 203 DDPELTCRLNGLQEH---------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD 253
           D+P L  R                 P R+I+D + +   D++++  A  AP +I   +D 
Sbjct: 72  DNPHLAVRSAKDDPKLKVAVPVDEQPWRVIVDSNARTPADARVLDDA--APTLIAVADDV 129

Query: 254 PVLALAFRKKNINIIYC-DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
               L      + +    +  DL KLL  L GRGV  + +EGG  +A SF++S LVD II
Sbjct: 130 DATHLEGIATVVRLPRAKEGLDLGKLLGELDGRGVRGMFLEGGPTLAASFVSSGLVDRII 189

Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-----GSDVCLEYIGK 357
            Y +  V+G G   S L+ G +E     +R +       G DV L    +
Sbjct: 190 AYIAPAVLGRG--KSALQGGTIESMDDILRCELLDVSRSGPDVRLVARPR 237


>gi|52550255|gb|AAU84104.1| pyrimidine reductase [uncultured archaeon GZfos37B2]
          Length = 225

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 99/220 (45%), Gaps = 15/220 (6%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++ +  A+S D  I       +PI+G +   +V  L+  +DAI+VGIGTVL D+P LT 
Sbjct: 3   PYVFINAAMSADGKISAYTRKQIPISGEVDFRRVDRLKYGADAIMVGIGTVLTDNPSLTV 62

Query: 210 RLNGLQ--------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
           +   L+        + +P+RI+ D   +  +D+ I+       +I+V+E+   V     R
Sbjct: 63  KSEELRKERRDLGTDENPIRIVADSLARTPVDADILMKGAGRRIILVSESAPGVRLDRLR 122

Query: 262 KKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
           +    I+       DL   L  L   GV  ++VEGG ++  S +   LVD++ +Y   ++
Sbjct: 123 EAGAEIVVAGEHRIDLASALGRLYEMGVRRMMVEGGGSLNWSLLYQGLVDAVYVYVGNMI 182

Query: 320 IGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354
           +G    P+  +               +  +       +E+
Sbjct: 183 LGGESSPTLTDGTGFSGIDGACQLELISLEQMDKGFVVEW 222


>gi|225629653|ref|ZP_03787646.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225591494|gb|EEH12541.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 130

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 61/126 (48%), Positives = 83/126 (65%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FMS ALR +  ++G  + NP+V C+IVKDG ++  G T  GG PHAEV AL+ A + 
Sbjct: 3   DDHFMSIALRLAEKNLGNVAPNPAVGCVIVKDGTIVSEGYTGIGGRPHAEVVALQNAKDS 62

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
             GAT Y+TLEPC H+G + PC   II+  I+RVV+   DPD RVSGRG++ L + GI V
Sbjct: 63  THGATIYITLEPCCHHGVTGPCTAKIIKASIKRVVIATIDPDSRVSGRGMKALKEAGIEV 122

Query: 127 DRMMES 132
           ++ +  
Sbjct: 123 EQGIMQ 128


>gi|57505260|ref|ZP_00371189.1| riboflavin biosynthesis protein (ribG) [Campylobacter upsaliensis
           RM3195]
 gi|57016396|gb|EAL53181.1| riboflavin biosynthesis protein (ribG) [Campylobacter upsaliensis
           RM3195]
          Length = 327

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/268 (26%), Positives = 119/268 (44%), Gaps = 37/268 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
             +M+ AL+ +  +  LT  NP+V C+I+ K+  ++        G  HAE+ A++EA   
Sbjct: 3   EFYMNLALKEAWKYQFLTYPNPAVGCVILDKNNQILSIKAHEKQGEAHAELNAIKEALKV 62

Query: 64  ----------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                                  +  + ATA+VTLEPC H G++PPCA+       ++V 
Sbjct: 63  LKPEFNFPKEPNVLHEFILTNHQKLLQNATAFVTLEPCVHQGKTPPCAKLFSTLEFKKVF 122

Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
           V V D + +++  G ++L QKGI +   ++E EG+  L  +L  Q        L ++++ 
Sbjct: 123 VSVKDEN-QIASGGAEFLRQKGILVEMGILEKEGRELLKPFLKWQNGTFKLFKLALSLNG 181

Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
             +          ++   S+   H +R+  D ++VG GT+  D P L  RL G    +P 
Sbjct: 182 SAL-------GKFVSNETSRIYAHQIRSIIDLLVVGGGTLRKDRPILDSRLCG--GKAPN 232

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIV 248
             IL      S D  I    +    I  
Sbjct: 233 LCILSRQNLESFDKTIPAFNVKNRQIFT 260


>gi|300711247|ref|YP_003737061.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halalkalicoccus
           jeotgali B3]
 gi|299124930|gb|ADJ15269.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halalkalicoccus
           jeotgali B3]
          Length = 218

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 54/218 (24%), Positives = 93/218 (42%), Gaps = 13/218 (5%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             + +  A S D  +       + I+G    ++V  LRA+SDA++VG+GTVLADDP LT 
Sbjct: 1   MDVVVNAATSADGKLSNRRREQIAISGPDDFDRVDDLRAESDAVMVGVGTVLADDPHLTV 60

Query: 210 -------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
                  R    +   P R++ D   +   D++I+   +    ++V+E            
Sbjct: 61  DESTSAVRTERGEPPQPARVVADSRARTPPDARILD-GVARTYLLVSEAAPTERVERLEA 119

Query: 263 KNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
           ++  +I    D  DL+     L   G+  LLVEGG  +  S   + LVD + ++    +I
Sbjct: 120 QDARVITVGDDRVDLEDGFETLATEGIDRLLVEGGGELIFSLFEADLVDELSVFVGPTII 179

Query: 321 GEGGIPSPLEEGYLEKNFMCV---RRDYFGSDVCLEYI 355
           G    P+  +     + F  +     +     V L + 
Sbjct: 180 GGREAPTLADGDGFVEGFPELSLESVERLDRGVVLRWR 217


>gi|288818933|ref|YP_003433281.1| riboflavin specific deaminase [Hydrogenobacter thermophilus TK-6]
 gi|288788333|dbj|BAI70080.1| riboflavin specific deaminase [Hydrogenobacter thermophilus TK-6]
 gi|308752520|gb|ADO46003.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p
           yrimidine1-reductase [Hydrogenobacter thermophilus TK-6]
          Length = 220

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 58/197 (29%), Positives = 95/197 (48%), Gaps = 11/197 (5%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVP----ITGFISKNQVHLLRAQSDAILVGIGTVLA 202
             R ++ +   VS D  + +    S      +    +   +H +RA+ D I+VG  TV  
Sbjct: 1   MNRPYVIIVSEVSVDGKLTLYRGASSKELMTLMDQEAYRYLHEIRAKVDGIMVGCETVRT 60

Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN---DDPVLALA 259
           D+P LT R   +Q  +P+RII      + LD+ I   +  AP II+T     +D V  + 
Sbjct: 61  DNPSLTVRY--VQGKNPVRIIPCSTANVPLDANIF--SKDAPTIIITTKRAPEDKVEKIK 116

Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
                + ++  D  D  KL+ +LV RG+ SL+VEGGA++   FI    VD I L    ++
Sbjct: 117 EVGAEVWVVGEDLVDFDKLMPMLVERGIKSLMVEGGASINWEFIKRGFVDEIRLIHLPVI 176

Query: 320 IGEGGIPSPLEEGYLEK 336
           +G   +P+ +     +K
Sbjct: 177 VGGENVPTLVGGEGFKK 193


>gi|327310583|ref|YP_004337480.1| 2, 5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           [Thermoproteus uzoniensis 768-20]
 gi|326947062|gb|AEA12168.1| 2, 5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           [Thermoproteus uzoniensis 768-20]
          Length = 217

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 103/222 (46%), Gaps = 16/222 (7%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++ L  AV+ D  I         ++  +   ++H LRA+ DA+LVG GTV  D+P LT 
Sbjct: 3   PYVYLAAAVTVDGRIASKTG-YSRLSCPVDLKRLHALRAKVDAVLVGAGTVKIDNPRLTV 61

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP-VLALAFRKKNINII 268
           R   ++  +P+R+I+D    +   +++  ++  AP I++T    P     A R++ + +I
Sbjct: 62  RY--VEGRNPVRVIVDGSLSVPQSARVFDSS--APTIVLTTEKAPREKVAALRERGVEVI 117

Query: 269 YC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-- 324
               D   L++ L  L   G+ S+LVEGG  +    ++  LVD +++  +    G G   
Sbjct: 118 QFPGDAVPLREALERLYASGIRSVLVEGGGRINWQMLSQCLVDELVITVTPYAFGAGTSL 177

Query: 325 IPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362
           +  P    +E        +       G +V L Y  +  C Q
Sbjct: 178 LEGPGYDDVESAPFRLRLLSAEICECGQEVVLRYRVE--CKQ 217


>gi|329766024|ref|ZP_08257585.1| deaminase-reductase domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329137479|gb|EGG41754.1| deaminase-reductase domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 218

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 61/203 (30%), Positives = 100/203 (49%), Gaps = 6/203 (2%)

Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
             + R H+ L  A+S D  I      S  ++  I K ++H LR++ DAILVG  TV  DD
Sbjct: 1   MEKSRPHVILSAAISIDGKIASRSGDSK-LSSQIDKVRLHKLRSKVDAILVGKNTVQRDD 59

Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE---NDDPVLALAFR 261
           P LT R    +  +P+RIILD    + ++SKI++T    P II      +++ +  L   
Sbjct: 60  PLLTVRYT--KGKNPIRIILDSQGTIPINSKILQTCDKVPTIIAVSRKISNENLKKLNKF 117

Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
              I +   +  ++K L+T L  R + ++LVEGG  V   FI +++ D I +  S  +IG
Sbjct: 118 PVEIIMSGENLVNIKSLMTSLSKRKIKTILVEGGGTVNWQFIQNKMFDEIFITISPFIIG 177

Query: 322 EGGIPSPLEEGYLEKNFMCVRRD 344
                + ++    +K     +  
Sbjct: 178 GTDAVTFVQGKGFDKIIKSPKLR 200


>gi|307324661|ref|ZP_07603867.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptomyces
           violaceusniger Tu 4113]
 gi|306889543|gb|EFN20523.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptomyces
           violaceusniger Tu 4113]
          Length = 238

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 104/230 (45%), Gaps = 19/230 (8%)

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
              V+ R  +  K A + D  I  A   S  IT   S+ +VH LRA   A +VG GT  A
Sbjct: 12  WHTVDGRPFVVYKYAATLDGRIAAADSTSQWITSAESRAEVHALRAACQATVVGSGTQQA 71

Query: 203 DDPELTCR---------LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD 253
           D+P L  R         +    +  P R+I+D + +   D++++  A  AP +I   +D 
Sbjct: 72  DNPHLAVRSVKDDPKLKVAVPVDQQPWRVIVDTNARTPADARVLDDA--APTMIAVADDA 129

Query: 254 PVLALAFRKKNINIIYCD-CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
               L      + +       D++ LL  L  RGV  + +EGG  +A SF+++ LVD I+
Sbjct: 130 DASHLEGVATVVRLPRAKVGLDVEALLRALHRRGVRGMFLEGGPTLAASFVSAGLVDRIV 189

Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-----GSDVCLEYIGK 357
            Y +  ++G G   S LE G +E     +R +       G DV L    +
Sbjct: 190 AYIAPALLGRG--KSGLEGGTIETIDDILRCELVDVARSGPDVRLIARPQ 237


>gi|126459735|ref|YP_001056013.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pyrobaculum
           calidifontis JCM 11548]
 gi|126249456|gb|ABO08547.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Pyrobaculum calidifontis JCM 11548]
          Length = 217

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 99/218 (45%), Gaps = 16/218 (7%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++ L  A + D  I  A      ++  I   ++H LRA+ DA++VG  T + D+P LT 
Sbjct: 3   PYVYLAAATTLDGRIASATG-YSRLSCPIDLRRLHELRARVDAVIVGANTAIVDNPRLTV 61

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP-VLALAFRKKNINII 268
           R   ++  +PMR+++D   K+    ++   +  AP ++ T    P    +  R + + + 
Sbjct: 62  RY--VEGRNPMRVLIDGALKVPTSLRMFDNS--APTLVFTTAKAPAEKIVELRARGVEVY 117

Query: 269 YCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
             D    D   +L+ L  RGV  +L+EGG      F++  LVD ++L  +  + G  G+ 
Sbjct: 118 VADGEKVDPAWVLSTLYQRGVRKVLLEGGGRTNWEFLHRCLVDEVVLTITPYIFGR-GVS 176

Query: 327 SPLEEGYLEKN-------FMCVRRDYFGSDVCLEYIGK 357
               EGY  K           V+    G +V L Y  +
Sbjct: 177 LVEGEGYPTKEDMPYSLVLQSVKTCECGQEVVLTYRVQ 214


>gi|289582726|ref|YP_003481192.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Natrialba magadii ATCC 43099]
 gi|289532279|gb|ADD06630.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Natrialba magadii ATCC 43099]
          Length = 220

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 100/222 (45%), Gaps = 15/222 (6%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            H+ +  A+S D  +       + I+G    ++V  LRA SDA++VG+GTVLADDP LT 
Sbjct: 1   MHVVVNAAMSADGKLSSRRREQIAISGDADFDRVDRLRADSDAVVVGVGTVLADDPHLTV 60

Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
                   R    +  +P R+++D   +    ++++  A  A   +   +  PV   A  
Sbjct: 61  KDENLRDERRTNGKPANPARVVVDSSARTPSSAEVLDDA--ATTYVCVSDAAPVEQRAAL 118

Query: 262 KKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
            ++ ++I    +  DL +    L  +G+  ++VEGG  +  S   + LVD + ++    V
Sbjct: 119 AEHADLITAGEERVDLLRAFAALQEQGIERVMVEGGGELIFSLFEAGLVDDLSVFVGPKV 178

Query: 320 IGEGGIPSPLEEGYLEKNFMCV---RRDYFGSDVCLEYIGKN 358
           IG    P+  +     +NF  +     +     V L +   +
Sbjct: 179 IGGRDAPTLADGDGFVENFPELELGEVERLDGGVLLTWRVAD 220


>gi|213416666|ref|ZP_03349810.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 141

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 64/140 (45%), Positives = 88/140 (62%), Gaps = 1/140 (0%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG 
Sbjct: 2   QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L Q GI 
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121

Query: 125 IVDRMMESEGKIFLHAYLTR 144
           +   +M SE +     +L R
Sbjct: 122 VSHGLMMSEAEALNKGFLKR 141


>gi|261886453|ref|ZP_06010492.1| riboflavin biosynthesis protein RibD [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 330

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/281 (26%), Positives = 114/281 (40%), Gaps = 42/281 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE---- 65
           M+ A+  +     LT  NP+V C+I  K+G ++        G PHAE+ A++ A E    
Sbjct: 1   MNIAINKAWEFQFLTYPNPAVGCVITGKNGEILSINAHEKAGMPHAELNAIKYALEMKNP 60

Query: 66  -------------------------EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                                       G+TAYVTLEPCSH GR+PPCA  + E G ++V
Sbjct: 61  AFKQDFDEIKDTNELYNFIMQNHSNLLNGSTAYVTLEPCSHQGRTPPCANLLKELGFKQV 120

Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVS 159
           ++   D     +  G Q L   GI     +  E     L  +L   +   S   + +   
Sbjct: 121 IIGAIDS-SENAKGGEQILKNSGIKTKIGVCKEKADELLEPFLAWSLGNFSFFKIALTQ- 178

Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219
                G+A  G   I+   S+   H LR+  D +++G  TV  D P L  RL      +P
Sbjct: 179 ----NGIASGGV--ISNLQSRTHSHKLRSLVDMLVIGGNTVRTDRPLLDTRLV-KNGKNP 231

Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
             ++     K      +    +L   +IV+ + D V    F
Sbjct: 232 DILLYSKESKFDTTIPLFN--ILDRRVIVSNSLDAVFERKF 270


>gi|257051630|ref|YP_003129463.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halorhabdus
           utahensis DSM 12940]
 gi|256690393|gb|ACV10730.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p
           yrimidine1-reductase [Halorhabdus utahensis DSM 12940]
          Length = 220

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 86/205 (41%), Gaps = 11/205 (5%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            H+ +  A+S D  +       V I+G    ++V  LRA SDA++VG+GTVLADDP LT 
Sbjct: 1   MHVVVNAAMSADGKLSTHDREQVAISGEADFDRVDGLRADSDAVMVGVGTVLADDPSLTV 60

Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
                   R +      P R++ D   +   D++I+        ++V E           
Sbjct: 61  DDPDRIAQRGDRGDPPQPARVVADSRARTPPDAQILDDEAE-TYLVVGERAATEKVERLE 119

Query: 262 KKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
                +I    D  DL   L  L   G+  L+VEGG  +  S     LVD + ++   ++
Sbjct: 120 STGATVIAAGHDRVDLSAGLDALESHGIDRLMVEGGGELIFSLFADDLVDELSVFVGPML 179

Query: 320 IGEGGIPSPLEEGYLEKNFMCVRRD 344
           IG    P+  +     + F  +   
Sbjct: 180 IGGRDAPTLADGDGFLEGFPVLDLR 204


>gi|126465369|ref|YP_001040478.1| deaminase-reductase domain-containing protein [Staphylothermus
           marinus F1]
 gi|126014192|gb|ABN69570.1| bifunctional deaminase-reductase domain protein [Staphylothermus
           marinus F1]
          Length = 227

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/218 (24%), Positives = 102/218 (46%), Gaps = 12/218 (5%)

Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
              +R ++ +   +S D  + + G     ++      ++H  R+  DA++VG  TV+ DD
Sbjct: 1   MKLERPYVLVFSTISVDGGLSVKGKKYK-LSSDRDLYRLHYFRSIVDAVMVGANTVIIDD 59

Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT-ENDDPVLALAFRKK 263
           P LT RL G +   P RI++D   +++   K+  T     ++I +  N D  +   F  K
Sbjct: 60  PLLTIRLPGYKGKQPYRIVIDGKLRVTPKYKVFNTKYAPTILITSISNKDREIIKRFTSK 119

Query: 264 NINIIYCDCR-------DLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
            + +++ D         DL+K +  L     +  +L+EGG  +  S + ++L+D + L  
Sbjct: 120 GVKVLFIDTDKNDPSKLDLRKAVEKLYREFYIRKILIEGGGQLLASLLKNKLIDELYLSI 179

Query: 316 SQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           S ++IG     + L E +LE     V ++ F   +  E
Sbjct: 180 SPLIIGLN--KTSLIEDFLESPLKLVLKNIFIDHITGE 215


>gi|171186187|ref|YP_001795106.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermoproteus
           neutrophilus V24Sta]
 gi|170935399|gb|ACB40660.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Thermoproteus neutrophilus V24Sta]
          Length = 217

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 99/223 (44%), Gaps = 18/223 (8%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++ L  A + D  I         ++      ++H LRA  DA++VG  T + D+P LT 
Sbjct: 3   PYVYLAAAATIDGRIASKTG-YSRLSCPHDLRRLHALRAAVDAVIVGANTAIVDNPRLTV 61

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE-NDDPVLALAFRKKNINII 268
           R   ++  +P+R+++D   K   D ++  ++  +P I+ T     P  A   + + + + 
Sbjct: 62  RY--VEGRNPLRVLIDGSLKAPTDLRMFDSS--SPTIVFTTRKAPPEKAAELKARGVEVY 117

Query: 269 YC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG--- 323
               D  D  ++L +L  RGV   L+EGG      F++  LVD I+L  +  V G G   
Sbjct: 118 VAEGDQVDPAEVLNVLYQRGVRKALLEGGGRTNWEFLSKCLVDEIVLTVTPYVFGSGVSL 177

Query: 324 ----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362
               G P+  E+         ++    G +V L Y  +  C Q
Sbjct: 178 VEGAGFPT-KEDAPFTLTLTSIKLCECGQEVVLTYRVR--CKQ 217


>gi|224130250|ref|XP_002320789.1| predicted protein [Populus trichocarpa]
 gi|222861562|gb|EEE99104.1| predicted protein [Populus trichocarpa]
          Length = 199

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 62/180 (34%), Positives = 99/180 (55%), Gaps = 14/180 (7%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M   +  +R  +G TS +P V C+IVK             G PHAEV AL +AG+
Sbjct: 30  DDGFYMRRCVELARKAIGCTSPSPMVGCVIVK------------AGQPHAEVFALRDAGD 77

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            A  ATAYV+LEPC+HYGR+PPC++ +++  ++ VV+ + DP+  V+ RG+Q L   GI 
Sbjct: 78  VAENATAYVSLEPCNHYGRTPPCSEVMVKAKLKEVVIGMIDPNPIVATRGVQRLRDAGID 137

Query: 126 VDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNM-IGMAGCGSVPITGFISKNQV 183
           V   +E E    L  A++ + +  +  +TL+ ++S +   +   G G     G+ S+   
Sbjct: 138 VVVGVEEELCKRLIEAFIHKMLTGKPFVTLRYSLSINGHPLNQLGEGVTDSGGYHSQQMA 197


>gi|18313740|ref|NP_560407.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pyrobaculum
           aerophilum str. IM2]
 gi|18161296|gb|AAL64589.1| riboflavin specific deaminase, putative [Pyrobaculum aerophilum
           str. IM2]
          Length = 227

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 54/201 (26%), Positives = 88/201 (43%), Gaps = 9/201 (4%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++ L  AV+ D  I         ++      ++H LRA+ DA++VG  T + D+P LT 
Sbjct: 3   PYVYLMAAVTIDGRIASKSG-YSRLSCPHDLKRLHALRAEVDAVIVGANTAIIDNPRLTV 61

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL-AFRKKNINII 268
           R       +P R+++D   +     +I      AP I+ T N  P   +   R+  I ++
Sbjct: 62  RYAA--GRNPTRVLIDGALRAPTTLRIFD--KTAPTIVYTTNLAPAEKINELRRLGIEVV 117

Query: 269 YCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
                  D   +L+ L  RGV  +L+EGG      FI+  LVD +I+  +  V G  G+ 
Sbjct: 118 VFPSHRVDPASVLSDLYNRGVRKVLIEGGGRTNWEFISKCLVDEVIVTVTPYVFGS-GVS 176

Query: 327 SPLEEGYLEKNFMCVRRDYFG 347
               EG+ +   M       G
Sbjct: 177 LVEGEGFKDIEEMPFNLKLLG 197


>gi|157164068|ref|YP_001466380.1| riboflavin biosynthesis protein RibD [Campylobacter concisus 13826]
 gi|112801624|gb|EAT98968.1| riboflavin biosynthesis protein RibD [Campylobacter concisus 13826]
          Length = 353

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 66/279 (23%), Positives = 105/279 (37%), Gaps = 56/279 (20%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCPHAEVQA------ 59
           D  +M  AL  +     LT  NP+V CL++ +   ++        G  HAE  A      
Sbjct: 3   DEFYMGLALSEAWKFQILTYPNPAVGCLVLDENEQILSCKAHEKAGYLHAEPTAILFALC 62

Query: 60  ---------------------------------------LEEAGEEARGATAYVTLEPCS 80
                                                  L       + + AYVTLEPCS
Sbjct: 63  KKSEKFKDDFIKAYNAKFSSDIKENEFGLLEPKFSYEFILNNHSNLLKNSKAYVTLEPCS 122

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLH 139
           H+G++PPCA  + E G   V++   D + +++  G   L   G+ +   +++      L 
Sbjct: 123 HHGKTPPCANLLKELGFSDVIIGSHDEN-KIASGGGNLLQSAGVNVKFGILKERCDKLLE 181

Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199
            +L  Q    S + + ++       G+A  G   IT  +S+  VH LR+  D +++G  T
Sbjct: 182 PFLAYQNGGFSFLKIALS-----KNGVASGGI--ITNELSRTHVHKLRSVIDTLVIGGNT 234

Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           V  D P L  RL      +P  II     K      +  
Sbjct: 235 VRTDRPRLDTRL-IKNGKNPDIIIYSRSDKFDETLPLFS 272


>gi|254459001|ref|ZP_05072424.1| riboflavin biosynthesis protein RibD [Campylobacterales bacterium
           GD 1]
 gi|207084272|gb|EDZ61561.1| riboflavin biosynthesis protein RibD [Campylobacterales bacterium
           GD 1]
          Length = 336

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 76/373 (20%), Positives = 136/373 (36%), Gaps = 78/373 (20%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            F++ AL+ +  + GLT  NP+V C IV     ++        G PHAEV AL  A  + 
Sbjct: 7   FFINLALKEAWKYQGLTYPNPAVGCTIVSPKNELLSVEAHKKSGLPHAEVMALRTAYFKL 66

Query: 68  ---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                                      R  + Y TLEPCSH G++P CA  I   GI++V
Sbjct: 67  TNDSKILELTSSSEIHTFLLNNHNNCFRDISLYTTLEPCSHIGKTPSCASLISALGIKKV 126

Query: 101 VVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
            V  +D +   SG   + L + G+ +   ++E +    +  +   + +K         ++
Sbjct: 127 FVGFNDINEEASGGT-EILKKSGVDVQSSILEKKAYDLIAPFNKWKEDKFVFFKWAQRLN 185

Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219
                      +  I+   S+  VH +R   D +++G  TV  D P L  RL  +   +P
Sbjct: 186 G-------STDAGTISSIESRINVHKMRNVCDLLVIGGNTVREDRPTLDARL--VHGKAP 236

Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279
             +I+    +      +                            +        D   LL
Sbjct: 237 DVLIISRKKEFDKSIALF--------------------------GVEGREVFIEDNFSLL 270

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
                    ++++EG + +    +   +VD  + Y +  + G+ G         +E+ F 
Sbjct: 271 N-----NYKNIMIEGSSNMFE--LTKDIVDYYLCYLAPTIGGKSGFE------KVEEKFE 317

Query: 340 CVRRDYFGSDVCL 352
            +  D    D+ +
Sbjct: 318 ILNIDQEDQDIIM 330


>gi|145591565|ref|YP_001153567.1| hypothetical protein Pars_1352 [Pyrobaculum arsenaticum DSM 13514]
 gi|145283333|gb|ABP50915.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Pyrobaculum arsenaticum DSM 13514]
          Length = 224

 Score =  156 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 51/217 (23%), Positives = 94/217 (43%), Gaps = 14/217 (6%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             + +  AV+ D  I         ++      ++H +RA  DA++VG  T + D+P LT 
Sbjct: 3   PRVYMMAAVTVDGRIASKTG-YSKLSCPYDLRRLHAMRAMVDAVVVGANTAITDNPRLTV 61

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP-VLALAFRKKNINII 268
           R    +  +P+R+++D   +   D ++      A  I+ T +  P       ++K I ++
Sbjct: 62  RY--AEGRNPIRVLIDGALRAPTDLRLFD--RSALTIVFTTSKAPSEKIKELQEKGIEVV 117

Query: 269 YCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG----- 321
             +    D  +++  L  RGV  +L+EGG      F+   LVD +I+  +  V G     
Sbjct: 118 VTEGSAVDPAEVVAHLSKRGVEKVLLEGGGKTNWEFLKRCLVDELIITVTPYVFGRGVSL 177

Query: 322 -EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
            +G   +  EE   E   +  +    G ++ L Y  K
Sbjct: 178 VDGEGFADTEEAPFELRLIEAKLCQCGREIVLHYEVK 214


>gi|226288491|gb|EEH44003.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Paracoccidioides
           brasiliensis Pb18]
          Length = 665

 Score =  156 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 103/242 (42%), Gaps = 31/242 (12%)

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
                 +   +TL  A S D  + +       ++G  SK   H LR++ DAIL+G+GT +
Sbjct: 384 RHENGRQFPFVTLTYASSMDARVSLLPGVQTALSGPESKLMTHYLRSRHDAILIGVGTAM 443

Query: 202 ADDPELTCRLN-------GLQEHSPMRIILDPHFKLS--LDSKIIKTALL----APVIIV 248
           AD+P L CRL          +   P  II+DP  + S   + ++++TA      AP IIV
Sbjct: 444 ADNPGLNCRLEGSGGFGGLGKMWQPRPIIVDPTGRWSADPECRLLRTAKEGKGKAPWIIV 503

Query: 249 TENDD--PVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAH 300
           +   +  P   L  +    + +     +       + +L  L   G+ S+++EGGA V  
Sbjct: 504 SPGANIQPAKVLRLKTHGGDYLRIVEYNQSWRLRWEAILRALGTEGINSVMIEGGATVIS 563

Query: 301 SFINS---RLVDSIILYRSQIVIGEGGI-------PSPLEEGYLEKNFMCVRRDYFGSDV 350
             +N      VDS+I+  +   +G GG+            +     +   +R    G DV
Sbjct: 564 ELLNPEYVDFVDSLIVTVAPTFLGRGGVGVSPDSKKDGTGKAISALDPRDIRWQSLGKDV 623

Query: 351 CL 352
            L
Sbjct: 624 VL 625


>gi|15790310|ref|NP_280134.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halobacterium
           sp. NRC-1]
 gi|169236043|ref|YP_001689243.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halobacterium
           salinarum R1]
 gi|10580782|gb|AAG19614.1| riboflavin-specific deaminase [Halobacterium sp. NRC-1]
 gi|167727109|emb|CAP13894.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halobacterium
           salinarum R1]
          Length = 220

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 92/219 (42%), Gaps = 16/219 (7%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT- 208
            H+ +  A+S D  +       V ++G     +V  LRA  DA++VG+GTVLADDP LT 
Sbjct: 1   MHVVVNAAMSADGKLSTRRREQVTLSGDADFERVDELRASVDAVMVGVGTVLADDPSLTL 60

Query: 209 -------CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL-ALAF 260
                   R    +   P R++ D H +   D++++  A  A   ++    +PV    + 
Sbjct: 61  DDSGHVAAREERGESPHPARVVADSHARTPPDARLLDGA--AETYVLVAEAEPVEHRESL 118

Query: 261 RKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
                 ++    +  DL   L  L  RGV  L+VEGG  +  S     LVD + ++ +  
Sbjct: 119 EAAGATVVVAGENRVDLPSALDALESRGVDRLMVEGGGELIFSLFAEELVDELSVFVAPQ 178

Query: 319 VIGEGGIPSPLEEGYLE---KNFMCVRRDYFGSDVCLEY 354
           +IG    P+  +          F     D     V L Y
Sbjct: 179 LIGGRDAPTLADGDGFVAEFPTFELTGVDRLDDGVLLAY 217


>gi|225681364|gb|EEH19648.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Paracoccidioides
           brasiliensis Pb03]
          Length = 668

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 103/242 (42%), Gaps = 31/242 (12%)

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
                 +   +TL  A S D  + +       ++G  SK   H LR++ DAIL+G+GT +
Sbjct: 387 RHENGRQFPFVTLTYASSMDARVSLLPGVQTALSGPESKLMTHYLRSRHDAILIGVGTAM 446

Query: 202 ADDPELTCRLN-------GLQEHSPMRIILDPHFKLS--LDSKIIKTALL----APVIIV 248
           AD+P L CRL          +   P  II+DP  + S   + ++++TA      AP IIV
Sbjct: 447 ADNPGLNCRLEGSGGFGGLGKMWQPRPIIVDPTGRWSADPECRLLRTAKEGKGKAPWIIV 506

Query: 249 TENDD--PVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAH 300
           +   +  P   L  +    + +     +       + +L  L   G+ S+++EGGA V  
Sbjct: 507 SPGANIQPAKVLRLKTHGGDYLRIVEYNQSWRLRWEAILRALGTEGINSVMIEGGATVIS 566

Query: 301 SFINS---RLVDSIILYRSQIVIGEGGI-------PSPLEEGYLEKNFMCVRRDYFGSDV 350
             +N      VDS+I+  +   +G GG+            +     +   +R    G DV
Sbjct: 567 ELLNPEYVDFVDSLIVTVAPTFLGRGGVGVSPDSKKDGTGKAISALDPRDIRWQSLGKDV 626

Query: 351 CL 352
            L
Sbjct: 627 VL 628


>gi|310792224|gb|EFQ27751.1| riboflavin-specific deaminase domain-containing protein [Glomerella
           graminicola M1.001]
          Length = 269

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 105/231 (45%), Gaps = 25/231 (10%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
           + R  +TL  A S D+ + +A      ++G  SK   H LR Q DAILVG+GTVLADDP 
Sbjct: 31  QSRPFVTLTFATSLDSSLSLAPGVRTRLSGPESKAMTHHLRRQHDAILVGVGTVLADDPG 90

Query: 207 LTCRLNGLQ-EHSPMRIILDPHFKLSL--DSKIIKTALL----APVIIV--TENDDPVLA 257
           L CR+ G   +  P  I++DP  +      +K+ + A      AP +++  T        
Sbjct: 91  LNCRIAGAGLDAQPRPIVVDPRGRWDFTEHNKVFEVARAGKGLAPFVLIGSTAAVHSKKK 150

Query: 258 LAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN---SRLV 308
                     +  D +      D + +L++L   G+ S++VEGG  V +S +N    + V
Sbjct: 151 SILEAHGGKFVVLDAKETEPRFDWQSILSVLHSEGLHSVMVEGGGQVINSLLNPDSQQFV 210

Query: 309 DSIILYRSQIVIGEGG-------IPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           D++I+  +   +G GG       + +P            V    FG D+ L
Sbjct: 211 DTVIVTVAPTWLGRGGVVVSPERVHTPDGTPVPAARLANVAWHQFGEDIVL 261


>gi|289548666|ref|YP_003473654.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p
           yrimidine1-reductase [Thermocrinis albus DSM 14484]
 gi|289182283|gb|ADC89527.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p
           yrimidine1-reductase [Thermocrinis albus DSM 14484]
          Length = 220

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 13/204 (6%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVP----ITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
            +I +   V+ D  + +    S      +    +   +H +RA+ D I+VG  TV  D+P
Sbjct: 3   PYIIIVSEVTVDGKLTLYRGASSKELMTLMDQEAYRYLHEIRAKVDGIMVGCETVRTDNP 62

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF---RK 262
            LT R   ++  +P+R+I      + LD+ I   +  AP IIVT    P   +       
Sbjct: 63  SLTVRY--VEGKNPIRVIPCSTANVPLDANIF--SKDAPTIIVTTLRAPEERIQRIRELG 118

Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
             + ++  D  D  KL+ +L  RG+ SL+VEGGA++    I    VD I L    +V+G 
Sbjct: 119 AEVWVVGEDLVDFDKLMPLLYERGIKSLMVEGGASINWELIKRGYVDEIRLIHLPVVVGG 178

Query: 323 GGIPSPLEEGYLE--KNFMCVRRD 344
             +P+ +     +  KN + +R  
Sbjct: 179 ENVPTLVGGEGFKSLKNLLHLRLR 202


>gi|317025956|ref|XP_001388634.2| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Aspergillus
           niger CBS 513.88]
          Length = 337

 Score =  155 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 69/253 (27%), Positives = 103/253 (40%), Gaps = 33/253 (13%)

Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
           E  +                TL  A S D+ + ++      ++G  SK   H LR++ DA
Sbjct: 77  EPHLPPKYGNPSSSSSLPFTTLTFATSLDSQLALSPGTRTVLSGPQSKAMTHYLRSRHDA 136

Query: 193 ILVGIGTVLADDPELTCRLNGLQEH-------SPMRIILDPHFKL--SLDSKII----KT 239
           IL+G+GT +AD+P L CRL G+  +        P  II+DP  +   +  SKI       
Sbjct: 137 ILIGVGTAVADNPGLNCRLAGVGGYGSEGLAGQPRPIIIDPSARWEFTAHSKIFELARNG 196

Query: 240 ALLAPVIIVTENDDPVL--ALAFRKKNINIIYCD---------CRDLKKLLTILVGRGVT 288
              AP II      P               I              D   LL  LV  G+ 
Sbjct: 197 RGRAPFIITAAETVPSAPQREVLESHGGKFIALPVGVGSDGAHRIDWTALLECLVREGLR 256

Query: 289 SLLVEGGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI---PSPLEEGYL---EKNFM 339
           S+++EGG ++ +S +      LVDS+I+  +   +G+GG+   P    EG +        
Sbjct: 257 SVMIEGGGSIINSLLEPGCQTLVDSVIVTIAPTWLGQGGVVVSPRRRVEGGMVVPASRLT 316

Query: 340 CVRRDYFGSDVCL 352
            V+   FG DV L
Sbjct: 317 GVKWYPFGEDVVL 329


>gi|154305619|ref|XP_001553211.1| hypothetical protein BC1G_07624 [Botryotinia fuckeliana B05.10]
 gi|150853143|gb|EDN28335.1| hypothetical protein BC1G_07624 [Botryotinia fuckeliana B05.10]
          Length = 281

 Score =  155 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 100/229 (43%), Gaps = 27/229 (11%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            H TL  A S D+ I M      P++G  SK   H LR++ DAIL+G+ T +AD+P L C
Sbjct: 37  PHTTLTFATSMDSQITMRPGIGSPLSGPASKAMTHYLRSKHDAILIGVNTAIADNPSLNC 96

Query: 210 RLNGLQEH--------SPMRIILDPHFKLSL--DSKII----KTALLAPVIIVTENDDP- 254
           R+ G+  +         P  +I+DP  + +   DSKI          AP II  + +D  
Sbjct: 97  RIEGVGGYGGGENLKGQPRPVIIDPKGRWNFGEDSKIFGLVKDGRGKAPWIITAQQEDEI 156

Query: 255 --VLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR- 306
                   R  +   I+           + +L  L   G+ SL++EGGA + +  +    
Sbjct: 157 SFEKKDLLRATSGKFIHLSPDKEGRFSWQDILEALWKEGIESLMIEGGAGIINDMLAEGQ 216

Query: 307 -LVDSIILYRSQIVIGEGGI---PSPLEEGYLEKNFMCVRRDYFGSDVC 351
             +D +I+  + + +G+GG+   P     G        V+    G DV 
Sbjct: 217 VFIDGVIVTIAPVWLGKGGVAVLPEREAPGNETFRLRGVKWIPLGEDVV 265


>gi|295671871|ref|XP_002796482.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Paracoccidioides
           brasiliensis Pb01]
 gi|226283462|gb|EEH39028.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Paracoccidioides
           brasiliensis Pb01]
          Length = 655

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 105/242 (43%), Gaps = 31/242 (12%)

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
                 +   +TL  A S D  + +       ++G  SK   H LR++ DAIL+G+GT +
Sbjct: 375 RHENGRQFPFVTLTYASSMDARVSLLPGVQTALSGPESKLMTHYLRSRHDAILIGVGTAM 434

Query: 202 ADDPELTCRLN-------GLQEHSPMRIILDPHFKLS--LDSKIIKTALL----APVIIV 248
           AD+P L CRL          +   P  II+DP  + S   + ++++TA      AP IIV
Sbjct: 435 ADNPGLNCRLEGSGGFGGLGKMWQPRPIIVDPTGRWSADPECRLLRTAKEGKGKAPWIIV 494

Query: 249 TENDD--PVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAH 300
           +   +  P   L  +    + +     +       + +L  L   G+ S+++EGGA V  
Sbjct: 495 SPGANIQPAKVLRLKTHGGDYLRIVEYNQSWRLRWEAILRALGTEGINSVMIEGGATVIS 554

Query: 301 SFINS---RLVDSIILYRSQIVIGEGGIP-SP------LEEGYLEKNFMCVRRDYFGSDV 350
             +N      VDS+I+  +   +G GG+  SP        +     +   +R    G DV
Sbjct: 555 ELLNPEYVDFVDSLIVTVAPTFLGRGGVGVSPDSKKDETGKAINALDPRDIRWQSLGKDV 614

Query: 351 CL 352
            L
Sbjct: 615 VL 616


>gi|302673289|ref|XP_003026331.1| hypothetical protein SCHCODRAFT_71199 [Schizophyllum commune H4-8]
 gi|300100013|gb|EFI91428.1| hypothetical protein SCHCODRAFT_71199 [Schizophyllum commune H4-8]
          Length = 273

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/259 (25%), Positives = 104/259 (40%), Gaps = 37/259 (14%)

Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
           L  Y  +    R  +TL  A S D  I   G   + ++G  S    H +R   DAIL+G+
Sbjct: 15  LAGYDLKHHADRPSVTLTFAQSLDAKIAGTGGKQLILSGKESMIMTHWMRTMHDAILIGV 74

Query: 198 GTVLADDPELTCR--------------LNGLQEHSPMRIILDPHFKLSLDSKI---IKTA 240
           GT L DDP+L  R               +G   + P  +ILD   +LS   K+    ++ 
Sbjct: 75  GTALNDDPQLNARHLPARSPGTYESSSEHGQPYNLPRPVILDARLRLSPSCKLLGNFQSG 134

Query: 241 LLAPVIIVTENDDP-----------VLALAFRKKNINIIYCDCR------DLKKLLTILV 283
                 + T +                  A  +    ++            ++ LL  L 
Sbjct: 135 TGRRPWVFTLDGSASPNPLQQVEWLERKQALEEAGARVVIVKGDLGNGTLSIQALLKTLH 194

Query: 284 GRGVTSLLVEGGAAVAHSFINS---RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
            RGV SL+VEGGA+V  SF+++    +VD+II+  +   +GE G+   ++ G     F  
Sbjct: 195 ERGVHSLMVEGGASVIKSFLDASQGGVVDTIIVTVAPTFVGEDGVGYGVQLGESGGKFKH 254

Query: 341 VRRDYFGSDVCLEYIGKNL 359
           V     G D       K+L
Sbjct: 255 VSTQVVGVDTVFVLGPKDL 273


>gi|317157692|ref|XP_001826523.2| riboflavin-specific deaminase [Aspergillus oryzae RIB40]
          Length = 637

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 61/236 (25%), Positives = 107/236 (45%), Gaps = 31/236 (13%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           +  H+TL  A S D+ I +       ++G  +K   H LR++ DAIL+G+GTVLAD+P L
Sbjct: 380 QFPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAILIGVGTVLADNPGL 439

Query: 208 TCRLN-------GLQEHSPMRIILDPHFKLS--LDSKIIKTA----LLAPVIIVTEND-- 252
            CRL          +   P  +I+DP  +     + ++++TA      AP ++V+     
Sbjct: 440 NCRLEGAGGFGGLGRMWQPRPVIIDPTGRWPVHPECRMLRTAVEGKGKAPWVVVSPGAQI 499

Query: 253 DPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN-- 304
            P   +  +    + +     +       + +L  L   GV S+++EGG  V    +N  
Sbjct: 500 HPQKLMMLKGYGGDFLRIVEYNQNWRLRWEAILRALASEGVKSVMIEGGGTVLSELLNPE 559

Query: 305 -SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-------NFMCVRRDYFGSDVCL 352
            +  +DSII+  +   +G GG+P   +    E+       N   V+    G +V +
Sbjct: 560 YTEFIDSIIVTVAPTYLGSGGVPVSPDSKRDEQGKPNAALNPREVKWVPLGQNVIM 615


>gi|119473533|ref|XP_001258642.1| riboflavin biosynthesis protein Rib7, putative [Neosartorya
           fischeri NRRL 181]
 gi|119406795|gb|EAW16745.1| riboflavin biosynthesis protein Rib7, putative [Neosartorya
           fischeri NRRL 181]
          Length = 280

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/236 (28%), Positives = 102/236 (43%), Gaps = 33/236 (13%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
              TL  A S D+ + ++      ++G  SK   H LR++ DAIL+G+GT +ADDP L C
Sbjct: 39  PFTTLTFATSLDSALALSPGAKTVLSGPQSKAMTHYLRSRHDAILIGVGTAVADDPGLNC 98

Query: 210 RLN-------GLQEHSPMRIILDPHFKLSLD--SKIIKTA----LLAPVIIVTENDDPVL 256
           R+           E  P  I++DP  +      SKI+  A      AP II      P  
Sbjct: 99  RIAGVGGYGGQGLEGQPRPIVIDPSARWDFTESSKILTLAWEGRGRAPFIITGAQAVPAE 158

Query: 257 ALA-FRKKNINIIYCDCR---------DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN-- 304
             A   +     I  D           D   LL  L   G+ S+++EGGA + +S +   
Sbjct: 159 KKALLERHGGKFISLDVVTSETGEHRMDWTTLLKALSKEGLKSVMIEGGATIINSLLEPS 218

Query: 305 -SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-------NFMCVRRDYFGSDVCL 352
              L+DS+I+  +   +G+GG+    +  + E+           V+   FG DV L
Sbjct: 219 YQNLIDSVIVTIAPTWLGQGGVVVSPKRRFNEQGVAIPASRLTDVKWYPFGEDVVL 274


>gi|325092207|gb|EGC45517.1| riboflavin-specific deaminase [Ajellomyces capsulatus H88]
          Length = 684

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 105/238 (44%), Gaps = 31/238 (13%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
             +   +TL  A S D+ + +       ++G  +K   H LR++ DAIL+G+GT + D+P
Sbjct: 390 NRQFPFVTLTYASSMDSKVSLFPGVQTALSGPETKLMTHYLRSRHDAILIGVGTAMVDNP 449

Query: 206 ELTCRL-------NGLQEHSPMRIILDPHFKLS--LDSKIIKTALL----APVIIVTEND 252
            L CRL          +   P  II+DP  +     + +++KTA      AP ++V+   
Sbjct: 450 GLNCRLTGSGGFGGLGKMWQPRPIIVDPTGRWPADPECRLLKTAKEGKGKAPWVVVSPGA 509

Query: 253 D--PVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           +  P   LA +    + +     +       + +L  L   G+TS+++EGGA V    +N
Sbjct: 510 NIQPAKVLALKNHGGDYLRIVEYNQSWRLRWEAILRALGTEGITSVMIEGGATVISELLN 569

Query: 305 S---RLVDSIILYRSQIVIGEGGI-------PSPLEEGYLEKNFMCVRRDYFGSDVCL 352
                 VDS+I+  +   +G+GG+            +     N   ++    G DV +
Sbjct: 570 PEYVDFVDSLIITVAPTFLGQGGVGVSPDAKKDNTGKPISALNPRDIKWQPLGQDVVM 627


>gi|70985705|ref|XP_748358.1| riboflavin biosynthesis protein Rib7 [Aspergillus fumigatus Af293]
 gi|66845987|gb|EAL86320.1| riboflavin biosynthesis protein Rib7, putative [Aspergillus
           fumigatus Af293]
          Length = 280

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/236 (28%), Positives = 101/236 (42%), Gaps = 33/236 (13%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
              TL  A S D+ + ++      ++G  SK   H LR++ DAIL+G+GT +ADDP L C
Sbjct: 39  PFTTLTFATSLDSALALSPGAKTALSGPQSKAMTHYLRSRHDAILIGVGTAVADDPGLNC 98

Query: 210 RLN-------GLQEHSPMRIILDPHFKLSL--DSKIIKTALL----APVIIVTENDDPVL 256
           R+           E  P  I++DP  +     +SKI+  A      AP I+      P  
Sbjct: 99  RIAGVGGYGGQGLEGQPRPIVIDPSARWDFTENSKILTLAREGRGRAPFILTGTQSIPAE 158

Query: 257 ALA-FRKKNINIIYCDCR---------DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN-- 304
             A   +     I  D           D   LL  L   G+ S+++EGGA + +S +   
Sbjct: 159 KKALLERHGGKFISLDVVTSETEERRMDWTTLLKALSKEGLKSVMIEGGATIINSLLEPS 218

Query: 305 -SRLVDSIILYRSQIVIGEGG-IPSPL------EEGYLEKNFMCVRRDYFGSDVCL 352
              L+DS+I+  +   +G+GG + SP                  V+   FG DV L
Sbjct: 219 YQNLIDSVIVTIAPTWLGQGGVVVSPTRRFNEQGVAIPASRLTDVKWYPFGEDVVL 274


>gi|262196785|ref|YP_003267994.1| 5-amino-6-(5-phosphoribosylamino)uracilreductase [Haliangium
           ochraceum DSM 14365]
 gi|262080132|gb|ACY16101.1| 5-amino-6-(5-phosphoribosylamino)uracilreductase [Haliangium
           ochraceum DSM 14365]
          Length = 319

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 63/238 (26%), Positives = 99/238 (41%), Gaps = 5/238 (2%)

Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
              G I D                     R  +   +A S D  I  A   S  I+G   
Sbjct: 82  RAAGEIEDAAARLLDLYLPLVLARAPAGGRPRVIAHLAQSLDGRIATACGTSQWISGNQD 141

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
               H +RA  DA+LVG  TV+ DDP+LTCR   ++   P R++LDP  ++S + +I + 
Sbjct: 142 LVHNHRMRALCDAVLVGAETVIHDDPQLTCR--EVEGAHPTRVVLDPRGRVSAERRIFQD 199

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
            +   V+I  +  +  L     +  +            +L  L   G+  L VEGG    
Sbjct: 200 RVAPTVVIGNQEGEHALPAHVTRLQVGTPGARIA-PGDILDALAVHGIHRLFVEGGGLTV 258

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-GYLEKNFMC-VRRDYFGSDVCLEYI 355
            +F+ + L+D + +  + ++IG G     L +   LE      VRR  F +DV  E +
Sbjct: 259 SAFLQAGLLDRLQITVAPMIIGSGRASISLPDIDSLEHALRPEVRRFVFDTDVMFECV 316


>gi|55377942|ref|YP_135792.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haloarcula
           marismortui ATCC 43049]
 gi|55230667|gb|AAV46086.1| 25-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Haloarcula marismortui ATCC 43049]
          Length = 219

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 92/218 (42%), Gaps = 14/218 (6%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            H+ +  A+S D  +       + I+G    ++V  LRA SDA++VG+GT+LADDP LT 
Sbjct: 1   MHVIVNAAMSVDGKLSSRRREQIAISGPDDFDRVDQLRADSDAVMVGVGTILADDPSLTV 60

Query: 210 RLNGLQ--------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
                +          +P R+I D   +   D+ ++        ++V+E   P       
Sbjct: 61  DDADRRAARAERGDPENPARVIADSRIRTPPDATVLD-GRAQTYLLVSEAAPPDFIEEME 119

Query: 262 KKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
                +I    D  DL   L  L G G+  L+VEGG  +  S +   LVD + +Y    V
Sbjct: 120 DAGAYVIAAGQDRVDLTTTLAKLEGDGIDQLMVEGGGELIFSLLEEALVDELFVYVGPKV 179

Query: 320 IGEGGIPSPLEEGYLEKNF---MCVRRDYFGSDVCLEY 354
           IG    P+  +     ++F        +     V L +
Sbjct: 180 IGGRDAPTLADGDGFIEDFPEPELADVERVDDGVVLHW 217


>gi|108805370|ref|YP_645307.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Rubrobacter xylanophilus DSM 9941]
 gi|108766613|gb|ABG05495.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Rubrobacter xylanophilus DSM 9941]
          Length = 230

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 11/216 (5%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
                 +TL  A + D  +  A   S  I+   S  + H LRA  DA++VG+GTV  DDP
Sbjct: 5   PNHLPTVTLSYAQTLDGRLATAAGSSQWISCESSLARAHALRAGHDAVMVGVGTVCRDDP 64

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII-VTENDDPVLALAFRKKN 264
            LT RL  +   +P+R+++D   +    + ++        ++ VTE           +  
Sbjct: 65  RLTVRL--VPGENPLRVVVDSTLRTPPSAAVLSDGGAGRTVLAVTERASRERCARAERLG 122

Query: 265 INIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
             ++          +L  LL  L   GV S++VEGGA++  SF+  RL D + +  +  +
Sbjct: 123 ARVLRLPEDGEGRVELAALLAALWESGVRSVMVEGGASLITSFLRERLADRLAVCVAPKL 182

Query: 320 IGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCL 352
           +G G        + +               G+D+ +
Sbjct: 183 LGRGIEAVGELGIRDLGGALRLEETSVTLCGTDILV 218


>gi|119871899|ref|YP_929906.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pyrobaculum
           islandicum DSM 4184]
 gi|119673307|gb|ABL87563.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Pyrobaculum islandicum DSM 4184]
          Length = 217

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 14/214 (6%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++ L  A + D  I         ++      ++H +RA  DAI+VG  T + D+P LT 
Sbjct: 3   PYVYLVAATTIDGRIASYTG-YSRLSCPYDLKRLHSIRASVDAIIVGANTAIVDNPRLTV 61

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP---VLALAFRKKNIN 266
           R   ++  +PMR+++D   +  L  +I  ++  AP ++ T +  P   +  L  R   I 
Sbjct: 62  RY--VEGKNPMRVLIDGALRAPLTLRIFDSS--APTVVFTTHKAPQDKIHELQKRGVKIY 117

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG----- 321
           I   +  D   +L  L  +GV  +L+EGG      F++  LVD IIL  +  V G     
Sbjct: 118 ITEGETVDPAYVLDTLYKQGVRKVLLEGGGRTNWEFLSKCLVDEIILTVTPYVFGRGVSL 177

Query: 322 -EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
            EG   +  E+         ++    G +V L+Y
Sbjct: 178 VEGAGFATTEDTPFALTLHSIKLCECGQEVVLKY 211


>gi|297526352|ref|YP_003668376.1| bifunctional deaminase-reductase domain protein [Staphylothermus
           hellenicus DSM 12710]
 gi|297255268|gb|ADI31477.1| bifunctional deaminase-reductase domain protein [Staphylothermus
           hellenicus DSM 12710]
          Length = 225

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/218 (24%), Positives = 101/218 (46%), Gaps = 12/218 (5%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
            +R +I +   +S D  + + G     ++      ++H  R+  DA++VG  TV+ DDP 
Sbjct: 1   MERPYILVFSTISVDGGLSVKGKRYR-LSSDRDIYRLHYFRSIVDAVMVGANTVIIDDPL 59

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT-ENDDPVLALAFRKKNI 265
           LT RL   +   P R+++D   ++  + ++  T     ++I +  N D  +   F  + +
Sbjct: 60  LTVRLPDYKGKQPYRVVVDGKLRVMPELRVFDTRHAPTILITSINNKDREMIRRFLSRGV 119

Query: 266 NIIYCDCR-------DLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
            I++ D         DL+K +  L     +  +LVEGG  +  S   +RL+D + L  S 
Sbjct: 120 RILFVDTDKYDPSKIDLRKAVEKLYREFSIRKILVEGGGQLIASLFKNRLIDELYLSISP 179

Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           ++IG     + L E +L+     V ++ F   +  E I
Sbjct: 180 LIIGLN--KTSLIEDFLDSPVRLVLKNIFVDHITGEII 215


>gi|126179344|ref|YP_001047309.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanoculleus
           marisnigri JR1]
 gi|125862138|gb|ABN57327.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanoculleus
           marisnigri JR1]
          Length = 228

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 98/220 (44%), Gaps = 15/220 (6%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTVLA 202
             R H+ +   ++ D  + +    S  I        ++  +H  RA+ DAI+VG  T+  
Sbjct: 4   HDRPHVLMMSEITVDGKLTLKRGASSKILMKYMAPETELLLHQTRAEYDAIMVGANTIRI 63

Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
           D+  LT RL  ++  SP+R+I      +  D+ ++       VI V+E          R+
Sbjct: 64  DNSFLTVRL--VEGKSPLRVIPSSRADIPPDANVL-GPDARTVIAVSEAAPAENVARLRE 120

Query: 263 KNINIIYCDCR--DLKKLLTIL-VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
             ++++    +  DL +L+ IL    GV  +++EGG  +  + +N RLVD I L     +
Sbjct: 121 SGVDVVVAGEKEVDLPELMGILKRDYGVDRMMIEGGPTLNWAMLNHRLVDEIRLIHLPFI 180

Query: 320 IGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354
           +G    PS +   ++E           R    GS++  E+
Sbjct: 181 VGGADTPSLVGGMHIETEEEMFRLSLKRHFMCGSNLVTEW 220


>gi|110668419|ref|YP_658230.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haloquadratum
           walsbyi DSM 16790]
 gi|109626166|emb|CAJ52622.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haloquadratum
           walsbyi DSM 16790]
          Length = 229

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 60/218 (27%), Positives = 92/218 (42%), Gaps = 15/218 (6%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            H+ +  A+S D  +       V I+G     +V  LRA +DAILVGIGTVLADDP L  
Sbjct: 1   MHVVVNAAISIDGKLSTRRREQVAISGERDFERVSELRANNDAILVGIGTVLADDPHLVV 60

Query: 210 RLNGLQEHS-------PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA---LA 259
             +  +          P RII+D   +   D++++     AP  I+     P      L 
Sbjct: 61  EGSYRKRRQDQGLIPTPHRIIIDSRARTPTDAEVLDDE--APTYIIVSESAPTSRQADLE 118

Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
               N+ I   D   +   L+ L   G++S++VEGG  +  S   + LVD + +Y   ++
Sbjct: 119 VEGANVMIAGRDRVSMPAALSALADSGMSSIMVEGGGEIIFSLFEANLVDELSVYVGSML 178

Query: 320 IGEGGIPSPLEEGYL---EKNFMCVRRDYFGSDVCLEY 354
           IG    P+  +                      V L+Y
Sbjct: 179 IGGRDAPTLADGDGFIDDPTQLQLTSVKQIDDGVLLQY 216


>gi|317034868|ref|XP_001400638.2| riboflavin-specific deaminase [Aspergillus niger CBS 513.88]
          Length = 654

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 60/241 (24%), Positives = 107/241 (44%), Gaps = 31/241 (12%)

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
                +  H+TL  A S D+ I +       ++G  +K   H LR++ DAIL+G+GTVLA
Sbjct: 395 HNDRRQFPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAILIGVGTVLA 454

Query: 203 DDPELTCRLNGLQE-------HSPMRIILDPHFKLS--LDSKIIKTA----LLAPVIIVT 249
           D+P L CRL G            P  +++DP  +     D ++++TA      AP ++V+
Sbjct: 455 DNPGLNCRLEGAGGFGGLGRMWQPRPVVVDPTGRWPVHPDCRMLRTAVEGKGKAPWVVVS 514

Query: 250 END--DPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHS 301
                DP   +  +    + +     +       + +L  L   G+ S+++EGG  V   
Sbjct: 515 PGARIDPQKLMMLKGYGGDYLRIMEYNQNWRLRWEAILRALASEGIKSVMIEGGGTVLSE 574

Query: 302 FIN---SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-------NFMCVRRDYFGSDVC 351
            +N   +  +DSII+  +   +G GG+    +    ++       N   V+    G +V 
Sbjct: 575 LLNPEYTEFIDSIIVTVAPTYLGSGGVSVSPDSKRDQEGKPNAALNPRDVKWTPLGQNVI 634

Query: 352 L 352
           +
Sbjct: 635 M 635


>gi|134081305|emb|CAK41808.1| unnamed protein product [Aspergillus niger]
          Length = 651

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 60/241 (24%), Positives = 107/241 (44%), Gaps = 31/241 (12%)

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
                +  H+TL  A S D+ I +       ++G  +K   H LR++ DAIL+G+GTVLA
Sbjct: 392 HNDRRQFPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAILIGVGTVLA 451

Query: 203 DDPELTCRLNGLQE-------HSPMRIILDPHFKLS--LDSKIIKTA----LLAPVIIVT 249
           D+P L CRL G            P  +++DP  +     D ++++TA      AP ++V+
Sbjct: 452 DNPGLNCRLEGAGGFGGLGRMWQPRPVVVDPTGRWPVHPDCRMLRTAVEGKGKAPWVVVS 511

Query: 250 END--DPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHS 301
                DP   +  +    + +     +       + +L  L   G+ S+++EGG  V   
Sbjct: 512 PGARIDPQKLMMLKGYGGDYLRIMEYNQNWRLRWEAILRALASEGIKSVMIEGGGTVLSE 571

Query: 302 FIN---SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-------NFMCVRRDYFGSDVC 351
            +N   +  +DSII+  +   +G GG+    +    ++       N   V+    G +V 
Sbjct: 572 LLNPEYTEFIDSIIVTVAPTYLGSGGVSVSPDSKRDQEGKPNAALNPRDVKWTPLGQNVI 631

Query: 352 L 352
           +
Sbjct: 632 M 632


>gi|171690512|ref|XP_001910181.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945204|emb|CAP71315.1| unnamed protein product [Podospora anserina S mat+]
          Length = 260

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 102/223 (45%), Gaps = 20/223 (8%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            H+TL  A S D  + +A      ++G  SK+  H LR + +AILVG  T L D+P L  
Sbjct: 31  PHLTLTYATSLDASLSLAPGVRTTLSGPYSKSMTHYLRTRHNAILVGCTTALVDNPALNS 90

Query: 210 RLNGLQ--EHSPMRIILDPHFKLSL--DSKIIKTALL----APVIIVTENDD-PVLALAF 260
           RL  +   +  P  IILDP  +     DS++I+ A       P ++     +        
Sbjct: 91  RLGSITSLDQQPRPIILDPKGRWDFTEDSQVIRLAAEFKGKGPWVVTKRGGETKERGELL 150

Query: 261 RKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAHSFI---NSRLVDSII 312
            +     +  +  +        +L++L  +GV S++VEGG  V +S +    +RLVDS+I
Sbjct: 151 ERVGGKFLVLETGEDGRFKWGDVLSVLGEQGVRSVMVEGGGEVINSLLIDPENRLVDSVI 210

Query: 313 LYRSQIVIGEGGI---PSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           +  +   +G+GG+   PS  +    +     V     G DV L
Sbjct: 211 ITIAPTWLGKGGVVVSPSRQQGQTSQLKLRDVSWQPHGEDVVL 253


>gi|134054726|emb|CAK43566.1| unnamed protein product [Aspergillus niger]
          Length = 275

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 69/253 (27%), Positives = 103/253 (40%), Gaps = 33/253 (13%)

Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
           E  +                TL  A S D+ + ++      ++G  SK   H LR++ DA
Sbjct: 15  EPHLPPKYGNPSSSSSLPFTTLTFATSLDSQLALSPGTRTVLSGPQSKAMTHYLRSRHDA 74

Query: 193 ILVGIGTVLADDPELTCRLNGLQEH-------SPMRIILDPHFKL--SLDSKII----KT 239
           IL+G+GT +AD+P L CRL G+  +        P  II+DP  +   +  SKI       
Sbjct: 75  ILIGVGTAVADNPGLNCRLAGVGGYGSEGLAGQPRPIIIDPSARWEFTAHSKIFELARNG 134

Query: 240 ALLAPVIIVTENDDPVL--ALAFRKKNINIIYCD---------CRDLKKLLTILVGRGVT 288
              AP II      P               I              D   LL  LV  G+ 
Sbjct: 135 RGRAPFIITAAETVPSAPQREVLESHGGKFIALPVGVGSDGAHRIDWTALLECLVREGLR 194

Query: 289 SLLVEGGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI---PSPLEEGYL---EKNFM 339
           S+++EGG ++ +S +      LVDS+I+  +   +G+GG+   P    EG +        
Sbjct: 195 SVMIEGGGSIINSLLEPGCQTLVDSVIVTIAPTWLGQGGVVVSPRRRVEGGMVVPASRLT 254

Query: 340 CVRRDYFGSDVCL 352
            V+   FG DV L
Sbjct: 255 GVKWYPFGEDVVL 267


>gi|238501136|ref|XP_002381802.1| riboflavin biosynthesis protein Rib7, putative [Aspergillus flavus
           NRRL3357]
 gi|220692039|gb|EED48386.1| riboflavin biosynthesis protein Rib7, putative [Aspergillus flavus
           NRRL3357]
          Length = 273

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 67/253 (26%), Positives = 105/253 (41%), Gaps = 33/253 (13%)

Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
           E  +  +             TL  A S D+ + +A      ++G  SK   H LR++ DA
Sbjct: 17  EPHLPPNNEPELPKSNLPFTTLTFATSLDSSLALAPGTRTTLSGPQSKAMTHYLRSRHDA 76

Query: 193 ILVGIGTVLADDPELTCRL-------NGLQEHSPMRIILDPHFKLSL--DSKIIK----T 239
           IL+G+GT +AD+P L CR+              P  I++DP  +      SKI+      
Sbjct: 77  ILIGVGTAVADNPGLNCRIEGVGGYGGEGLLGQPRPIVIDPRARWDFTEQSKILDLVQEG 136

Query: 240 ALLAPVIIVTENDDP--VLALAFRKKNINIIYCDC---------RDLKKLLTILVGRGVT 288
              AP II +   +P               I  D           D   +L  L   G+ 
Sbjct: 137 KGRAPFIITSTGTEPAAEKKALLESYGGKFIPLDLFLEEHGERILDWTAVLECLRNEGLR 196

Query: 289 SLLVEGGAAVAHSFIN---SRLVDSIILYRSQIVIGEGG-IPSP---LEEGYL--EKNFM 339
           S+++EGG  V +S +    + LV+S+I+  +   +G+GG + SP   +E G +       
Sbjct: 197 SVMIEGGGTVINSLLEPRWAHLVNSVIVTIAPTWLGQGGVVVSPRRRVEGGAVVPAARLR 256

Query: 340 CVRRDYFGSDVCL 352
            V+   FG DV L
Sbjct: 257 DVKWYPFGEDVVL 269


>gi|124485467|ref|YP_001030083.1| hypothetical protein Mlab_0643 [Methanocorpusculum labreanum Z]
 gi|124363008|gb|ABN06816.1| bifunctional deaminase-reductase domain protein [Methanocorpusculum
           labreanum Z]
          Length = 225

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 100/220 (45%), Gaps = 14/220 (6%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTVLAD 203
           ++ H+ +   ++ D  + +    S  I        ++  +H  RA+ DAI+VG  T+  D
Sbjct: 5   QKPHVLMISEITADGKLTLGKGVSSKILMKHMSHEAEILLHETRAEYDAIMVGSSTIRID 64

Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
           +  LT R+  ++  +P+R+I +    L L++ +  T     V+ V+E        AF  +
Sbjct: 65  NSFLTVRM--VEGENPLRVIPNSLADLPLEANVFDTTKARTVLAVSEKAPKDRIDAFTAR 122

Query: 264 NINIIYC--DCRDLKKLLTIL-VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
            ++++ C  D  D  +L+ IL     +  L++EGG  +    ++  LVD I L     ++
Sbjct: 123 GVDVVVCGEDRVDFVQLMNILSAKYQIKKLIIEGGPTLNWHMLHHGLVDEIRLIHMPFIV 182

Query: 321 GEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYI 355
           G    PS +    L      ++ D      +G+++  EY 
Sbjct: 183 GGSDTPSLVGGMPLASENDMIKLDLRSTKMYGTNLVTEYR 222


>gi|260907065|ref|ZP_05915387.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Brevibacterium
           linens BL2]
          Length = 473

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 57/216 (26%), Positives = 108/216 (50%), Gaps = 14/216 (6%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
           +  ++A S+D  I  +   +  ++G I +  +H +RA   A+LVG GTV+ADDP LT R 
Sbjct: 245 VVAQLAQSEDGFIATSDGDAQFVSGQIDRAHLHRIRASVGAVLVGCGTVIADDPRLTVR- 303

Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD 271
             +   +P+R++LDPH ++   + ++ +     + ++     P   +      + +   +
Sbjct: 304 -AVPGENPVRVVLDPHGRVPTTATVLTSPESPTLWLIGAEVAPSSDVGDHVSVVRLPAAE 362

Query: 272 CRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP--- 326
             D    ++++++      S+LVEGG     SF+ + ++D + L  + + IG  G+P   
Sbjct: 363 GDDIPPARIVSLIREYVAGSILVEGGGRTVSSFLAAGVLDRLFLTSAPVFIG-NGVPGIR 421

Query: 327 ---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
              +P+    L + F   RR  FG D+C EY+   L
Sbjct: 422 FEGTPVMAEALRRPF---RRYQFGEDMCTEYLLSEL 454


>gi|330930301|ref|XP_003302977.1| hypothetical protein PTT_14981 [Pyrenophora teres f. teres 0-1]
 gi|311321324|gb|EFQ88912.1| hypothetical protein PTT_14981 [Pyrenophora teres f. teres 0-1]
          Length = 280

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 61/241 (25%), Positives = 101/241 (41%), Gaps = 29/241 (12%)

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           Y   +   +  +TL  A S D+ + +A      ++G  SK   H LR++ DAIL+G GT 
Sbjct: 31  YARPEHIAKPFVTLTFATSLDSQLAIAPGVQTALSGPRSKAMTHFLRSRHDAILIGAGTA 90

Query: 201 LADDPELTCRLNGLQEH-------SPMRIILDPHFKLSLD--SKIIKTALL----APVII 247
            AD+P L CR+ G+  +        P  +++DPH +   +  SK+++ A      AP I+
Sbjct: 91  TADNPSLNCRIEGVGGYGSEGLVGQPRPVVVDPHGRWQFNEESKVLRLAKEGKGKAPYIV 150

Query: 248 VTENDDPVLALAFRKKNINIIYCD---------CRDLKKLLTILVGRGVTSLLVEGGAAV 298
              +                +                  +L  L  +G+ S+++EGG  V
Sbjct: 151 TCTSPSADRRAILENVGGKFLLLGLSAKDVSQAGSSWHIILDALRQQGIQSVMIEGGGFV 210

Query: 299 AHSFINSR----LVDSIILYRSQIVIGEGGI---PSPLEEGYLEKNFMCVRRDYFGSDVC 351
            +  +       LVDS+I+  +   +G+GG+   P    E         VR    G DV 
Sbjct: 211 INDLLGPGPAYSLVDSVIVTIAPTWLGKGGVQVCPDGGSERLPVTRLQNVRWVPLGEDVV 270

Query: 352 L 352
           L
Sbjct: 271 L 271


>gi|240281297|gb|EER44800.1| riboflavin-specific deaminase [Ajellomyces capsulatus H143]
          Length = 611

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 105/238 (44%), Gaps = 31/238 (13%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
             +   +TL  A S D+ + +       ++G  +K   H LR++ DAIL+G+GT + D+P
Sbjct: 317 NRQFPFVTLTYASSMDSKVSLFPGVQTALSGPETKLMTHYLRSRHDAILIGVGTAMVDNP 376

Query: 206 ELTCRL-------NGLQEHSPMRIILDPHFKLS--LDSKIIKTALL----APVIIVTEND 252
            L CRL          +   P  II+DP  +     + +++KTA      AP ++V+   
Sbjct: 377 GLNCRLTGSGGFGGLGKMWQPRPIIVDPIGRWPADPECRLLKTAKEGKGKAPWVVVSPGA 436

Query: 253 D--PVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           +  P   LA +    + +     +       + +L  L   G+TS+++EGGA V    +N
Sbjct: 437 NIQPAKVLALKNHGGDYLRIVEYNQSWRLRWEAILRALGTEGITSVMIEGGATVISELLN 496

Query: 305 S---RLVDSIILYRSQIVIGEGGI-------PSPLEEGYLEKNFMCVRRDYFGSDVCL 352
                 VDS+I+  +   +G+GG+            +     N   ++    G DV +
Sbjct: 497 PEYVDFVDSLIITVAPTFLGQGGVGVSPDAKKDNTGKPISALNPRDIKWQPLGQDVVM 554


>gi|308803240|ref|XP_003078933.1| COG1985: Pyrimidine reductase, riboflavin biosynthesis (ISS)
           [Ostreococcus tauri]
 gi|116057386|emb|CAL51813.1| COG1985: Pyrimidine reductase, riboflavin biosynthesis (ISS)
           [Ostreococcus tauri]
          Length = 207

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 63/138 (45%), Positives = 83/138 (60%), Gaps = 3/138 (2%)

Query: 5   SFDARFMSAALRFSR-WHVGLTSTNPSVACLIV--KDGIVIGRGVTAYGGCPHAEVQALE 61
           + D  +M  AL  +          NP V C++V  +  +V+GRG     G PHAEV AL 
Sbjct: 56  ARDEEYMRQALEAAASRTAEEVHPNPLVGCVVVDPRADVVVGRGFHPRAGEPHAEVFALR 115

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AGE ARGATAYVTLEPC+H+GR+PPCA+ +++ G++RVVV   DPD RVSG G+Q L  
Sbjct: 116 AAGELARGATAYVTLEPCNHFGRTPPCARALVDAGVKRVVVGFVDPDPRVSGGGIQTLLD 175

Query: 122 KGIIVDRMMESEGKIFLH 139
            GI V    E      ++
Sbjct: 176 AGIDVAVGCEEARCREIN 193


>gi|255322011|ref|ZP_05363161.1| riboflavin biosynthesis protein RibD [Campylobacter showae RM3277]
 gi|255301115|gb|EET80382.1| riboflavin biosynthesis protein RibD [Campylobacter showae RM3277]
          Length = 371

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 70/327 (21%), Positives = 121/327 (37%), Gaps = 57/327 (17%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQA------ 59
           D  +MS A++ +     LT  NP+V C+I+   G ++        G  HAE  A      
Sbjct: 4   DEFYMSLAIKKAWEFQILTYPNPAVGCVILDSSGRLLSVAAHKKAGFLHAEPSAILLALC 63

Query: 60  ------------------------------------------LEEAGEEARGATAYVTLE 77
                                                     L+  G+  +GA AYVTLE
Sbjct: 64  QKCEAFLRDFLRDYHAALGVKFENAAELENADLEPNFTYEYILQNHGDLLKGAKAYVTLE 123

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKI 136
           PC+H G++PPCA+ +       VV+   D +  V+  G   L   GI +   ++  E   
Sbjct: 124 PCAHRGKTPPCAELLSRLKFAEVVIARGDENT-VASGGANILKSSGISVKFDVLRREADE 182

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
            +  +L  Q    S   L ++ +    + +    +  I+   S+   H LR+ ++ +++G
Sbjct: 183 LVEPFLAWQSGNFSFFKLALSANG---VAVGTAQNKIISNLASRTHSHRLRSAAELLVIG 239

Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
             TV AD P L  RL      +P  +++    +   D+ I    +    + VT + +   
Sbjct: 240 GATVRADRPRLDTRLIE-HGKNPN-VMIYSRER-EFDASIPLFGVEGRSVRVTSDINEAF 296

Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILV 283
           A                D +    +L 
Sbjct: 297 APRLTMFEGGENALKTLDERAKWLLLY 323


>gi|261188103|ref|XP_002620468.1| riboflavin-specific deaminase [Ajellomyces dermatitidis SLH14081]
 gi|239593343|gb|EEQ75924.1| riboflavin-specific deaminase [Ajellomyces dermatitidis SLH14081]
 gi|239609085|gb|EEQ86072.1| riboflavin-specific deaminase [Ajellomyces dermatitidis ER-3]
 gi|327356427|gb|EGE85284.1| riboflavin-specific deaminase [Ajellomyces dermatitidis ATCC 18188]
          Length = 666

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 60/236 (25%), Positives = 102/236 (43%), Gaps = 31/236 (13%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           +   +TL  A S D  + +       ++G  +K   H LR++ DAIL+G+GT +AD+P L
Sbjct: 377 QFPFVTLTYASSMDAKVSLFPGIQTALSGPETKVMTHYLRSRHDAILIGVGTAIADNPGL 436

Query: 208 TCR-------LNGLQEHSPMRIILDPHFKLS--LDSKIIKTALL----APVIIVTENDD- 253
            CR           +   P  II+DP  +     + +++KTA      AP +IV+   + 
Sbjct: 437 NCRLAGAGGFGGLGKMWQPRPIIVDPTGRWPADPECRLLKTAKAGKGKAPWVIVSPGANI 496

Query: 254 -PVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFINS- 305
            P   L  +    + +     +       + +L  L   GVTS+++EGGA V    +N  
Sbjct: 497 QPAKVLTLKNHGGDYLRIVEYNQSWRLRWEAILRALGTEGVTSVMIEGGATVISELLNPE 556

Query: 306 --RLVDSIILYRSQIVIGEGGI-------PSPLEEGYLEKNFMCVRRDYFGSDVCL 352
               VDS+I+  +   +G GG+            +     N   ++    G DV +
Sbjct: 557 YVDFVDSLIITLAPTFLGRGGVGVSPDAKKDNTGKPISALNPYDIKWQPLGQDVVM 612


>gi|270684433|ref|ZP_06222817.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
          HK1212]
 gi|270316231|gb|EFA28189.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
          HK1212]
          Length = 94

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 49/89 (55%), Positives = 60/89 (67%)

Query: 1  MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
          +  SS D  FM  AL  +      T+ NPSV C++VK+G ++G G     G PHAE  AL
Sbjct: 2  LEFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVAL 61

Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCA 89
           +AGE A+GATAYVTLEPCSHYGR+PPCA
Sbjct: 62 AQAGENAKGATAYVTLEPCSHYGRTPPCA 90


>gi|225555092|gb|EEH03385.1| riboflavin-specific deaminase [Ajellomyces capsulatus G186AR]
          Length = 684

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 105/238 (44%), Gaps = 31/238 (13%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
             +   +TL  A S D+ + +       ++G  +K   H LR++ DAIL+G+GT + D+P
Sbjct: 390 NRQFPFVTLTYASSMDSKVSLFPGVQTALSGTETKLMTHYLRSRHDAILIGVGTAMVDNP 449

Query: 206 ELTCRL-------NGLQEHSPMRIILDPHFKLS--LDSKIIKTALL----APVIIVTEND 252
            L CRL          +   P  II+DP  +     + +++KTA      AP ++V+   
Sbjct: 450 GLNCRLTGSGGFGGLGKMWQPRPIIVDPTGRWPADPECRLLKTAKEGKGKAPWVVVSPGA 509

Query: 253 D--PVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           +  P   LA +    + +     +       + +L  L   G+TS+++EGGA V    +N
Sbjct: 510 NIQPAKVLALKNHGGDYLRIVEYNQSWRLRWEAILRALGTEGITSVMIEGGATVISELLN 569

Query: 305 S---RLVDSIILYRSQIVIGEGGI-------PSPLEEGYLEKNFMCVRRDYFGSDVCL 352
                 VDS+I+  +   +G+GG+            +     N   ++    G DV +
Sbjct: 570 PEYVDFVDSLIITVAPTFLGQGGVGVSPDAKKDNTGKPISALNPRDIKWQPLGQDVVM 627


>gi|257460844|ref|ZP_05625945.1| riboflavin biosynthesis protein RibD [Campylobacter gracilis
           RM3268]
 gi|257442175|gb|EEV17317.1| riboflavin biosynthesis protein RibD [Campylobacter gracilis
           RM3268]
          Length = 407

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 65/260 (25%), Positives = 98/260 (37%), Gaps = 59/260 (22%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA------ 59
           D  +M  ALR +  +  LT  NP+V C+++ + G V+G G     G  HAE  A      
Sbjct: 3   DEFYMDLALRAAWRYQALTLPNPAVGCVLLDRGGRVLGIGAHKKAGFLHAEANAVFAALC 62

Query: 60  ------------------------------------------LEEAGEEARGATAYVTLE 77
                                                     L   G   RGA AYVTLE
Sbjct: 63  DLDVNFAQDFACEYAREFGVKFQNLEALKSALLQPSFAYDFILNRHGGLLRGACAYVTLE 122

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKI 136
           PC+H G++P CA+ + + G+ RVV+   D + + +G G + L +  I +   +  +  + 
Sbjct: 123 PCAHRGKTPSCAELLAQLGLSRVVIGARDTNAQAAG-GAEILRRGSIEIKFDVCHAAAEE 181

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
               +   +      I +           + G     I     +  VH LR+  D + VG
Sbjct: 182 LAEPFYLARESGFCFIKINA--------TLNGAAHGRIGSEKQRVFVHELRSVCDYVGVG 233

Query: 197 IGTVLADDPELTCRLNGLQE 216
             TV AD P L  R     E
Sbjct: 234 GQTVRADRPTLDVRAAKFDE 253


>gi|302546634|ref|ZP_07298976.1| LOW QUALITY PROTEIN: riboflavin biosynthesis, RibD
           domain-containing protein [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302464252|gb|EFL27345.1| LOW QUALITY PROTEIN: riboflavin biosynthesis, RibD
           domain-containing protein [Streptomyces himastatinicus
           ATCC 53653]
          Length = 272

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 56/251 (22%), Positives = 98/251 (39%), Gaps = 12/251 (4%)

Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG 168
                 GL+  +   +        E       YL   +        ++  S D  I    
Sbjct: 20  AEARAAGLERGADGAVRWREDATPEADELADRYLPLCLAGPRLTIAQLGQSLDGFIATRT 79

Query: 169 CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF 228
             +  +TG   +  +H LRA +DA++VG GT LADDP+LT R        P+R+ILDPH 
Sbjct: 80  GDADYVTGEEDRCHLHRLRALTDAVVVGAGTALADDPQLTVR--ACSGPHPVRVILDPHG 137

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           ++    ++        + +V                + +        ++L+  L  RG+ 
Sbjct: 138 RVPPHRRVFTDGSAPTLWVVGAETGDGRTAPDGVDVLTLPDRAAFAPQRLVEALAARGLG 197

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP------SPLEEGYLEKNFMCVR 342
            +L+EGG      F++   +  + +  + +++G+ GIP      +P+    L       R
Sbjct: 198 RVLIEGGGVTVSRFLHDGALHRLYVTVAPVLLGD-GIPGLRFDGTPVMRDALRPR---TR 253

Query: 343 RDYFGSDVCLE 353
           R   G D   E
Sbjct: 254 RARLGEDTLFE 264


>gi|71023879|ref|XP_762169.1| hypothetical protein UM06022.1 [Ustilago maydis 521]
 gi|46101653|gb|EAK86886.1| hypothetical protein UM06022.1 [Ustilago maydis 521]
          Length = 253

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 59/229 (25%), Positives = 104/229 (45%), Gaps = 20/229 (8%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           +R H+TL  A S D  I   G   + ++G  S    H LR   D I+VGIGTVL D+P+L
Sbjct: 26  RRPHVTLTFAQSSDGKIAGPGKTQLALSGPESMRLTHQLRTMHDGIMVGIGTVLNDNPQL 85

Query: 208 TCRL---NGLQEHSPMRIILDPHFKLSLDSKIIKTALLA----PVIIVTENDDPVLALAF 260
             RL          P  ++LD   ++ +D K+I+         P+++  ++  P      
Sbjct: 86  NARLLYAPPPVSRLPRPVVLDSKLRMPVDCKLIRNYAAGIGRQPLVLTLDSAHPDRRTQL 145

Query: 261 RKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS-RLVDSIILY 314
               +++I          D   +L  L   G+  L+VEGGA V  S +   + +D++++ 
Sbjct: 146 ELAGVDVIQVHDSSAALLDWTTILQHLYDAGIRRLMVEGGAGVIDSLMQQSQHIDALLVT 205

Query: 315 RSQIVIGEGG------IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
            + + +G  G      +PS + E + +  +    R +FG D  + +  +
Sbjct: 206 IAPLTVGSEGFSFTSKLPS-ISEAHPDAEWSLPSRAWFGKDEVIVWHKR 253


>gi|257388460|ref|YP_003178233.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halomicrobium
           mukohataei DSM 12286]
 gi|257170767|gb|ACV48526.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p
           yrimidine1-reductase [Halomicrobium mukohataei DSM
           12286]
          Length = 223

 Score =  152 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 98/221 (44%), Gaps = 12/221 (5%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT- 208
            H+ +  A+S D  +       + I+G    ++V  LRA+SDA++VG+GTVLADDP LT 
Sbjct: 1   MHVVVNAAMSADGKLSTRRREQIEISGTRDFDRVDELRAESDAVMVGVGTVLADDPSLTL 60

Query: 209 -------CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN-DDPVLALAF 260
                   R +  +  +P R++ D   +   D++++  A L  +++      D V  +  
Sbjct: 61  DDPERQRAREDRGEPANPARVVADSQVRTPPDARVLDEAALTYLLVSQAALTDFVTQMED 120

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
               + +   D  DL   L  L G G+  L+VEGG  +  S     LVD + ++    VI
Sbjct: 121 VGATVIVAGEDRVDLVTALAKLEGDGIDQLMVEGGGELIFSLFEEGLVDELSVFVGSTVI 180

Query: 321 GEGGIPSPLEEGYLEKNFMCVR---RDYFGSDVCLEYIGKN 358
           G    P+  +     + F  +     +     V L +   +
Sbjct: 181 GGRDAPTLADGEGFVEEFPALSLDGVERVDDGVLLSWTVTD 221


>gi|119025436|ref|YP_909281.1| riboflavin biosynthesis protein RibD [Bifidobacterium adolescentis
           ATCC 15703]
 gi|118765020|dbj|BAF39199.1| riboflavin biosynthesis protein RibD [Bifidobacterium adolescentis
           ATCC 15703]
          Length = 317

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 112/287 (39%), Gaps = 51/287 (17%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
           M+ AL  +R   G    NP V  ++V+DG V+  G       PHAE  A + A   G + 
Sbjct: 49  MAQALELARKGAGWVDPNPLVGAVVVRDGEVLATGYHDRYRGPHAERMAFDYADAHGIDL 108

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
            GAT   TLEPC H G  P C   I+  GI RVVV   DP+  V+G+GL+ L + G+ +V
Sbjct: 109 TGATVIDTLEPCCHVGSQPACTALILAHGIARVVVGSVDPNPIVAGKGLRILEEAGVEVV 168

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +M  E       +       + +I      + ++            + +  + +   L
Sbjct: 169 RDVMREECDAINRHFFHYITTGKPYIVDGRRRAGESD-----------SEYAVRRR--EL 215

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
            A   A+L G  + + D+       NG     P++ +                       
Sbjct: 216 YATYAAVLAGTESDVPDESF--AHFNG-----PVQAV----------------------- 245

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
                 D V+    R   +      C D  + L+ L  R + SL+VE
Sbjct: 246 ----GADEVVIGGHRPLLLEAGALACTDPDEWLSELGKRKIDSLIVE 288


>gi|159128508|gb|EDP53623.1| riboflavin biosynthesis protein Rib7, putative [Aspergillus
           fumigatus A1163]
          Length = 280

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 66/236 (27%), Positives = 101/236 (42%), Gaps = 33/236 (13%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
              TL  A S D+ + ++      ++G  SK   H LR++ DAIL+G+GT +ADDP L C
Sbjct: 39  PFTTLTFATSLDSALALSPGAKTVLSGPQSKAMTHYLRSRHDAILIGVGTAVADDPGLNC 98

Query: 210 RLN-------GLQEHSPMRIILDPHFKLSL--DSKIIKTALL----APVIIVTENDDPVL 256
           R+           +  P  I++DP  +     +SKI+  A      AP I+      P  
Sbjct: 99  RIAGVGGYGGQGLQGQPRPIVIDPSARWDFTENSKILTLAREGRGRAPFILTGTQSIPAE 158

Query: 257 ALA-FRKKNINIIYCDCR---------DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN-- 304
             A   +     I  D           D   LL  L   G+ S+++EGGA + +S +   
Sbjct: 159 KKALLERHGGKFISLDVVTSETEERRMDWTTLLKALSKEGLKSVMIEGGATIINSLLEPS 218

Query: 305 -SRLVDSIILYRSQIVIGEGG-IPSPL------EEGYLEKNFMCVRRDYFGSDVCL 352
              L+DS+I+  +   +G+GG + SP                  V+   FG DV L
Sbjct: 219 YQNLIDSVIVTIAPTWLGQGGVVVSPTRRFNEQGVAIPASRLTDVKWYPFGEDVVL 274


>gi|169781288|ref|XP_001825107.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Aspergillus
           oryzae RIB40]
 gi|83773849|dbj|BAE63974.1| unnamed protein product [Aspergillus oryzae]
          Length = 273

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 66/253 (26%), Positives = 103/253 (40%), Gaps = 33/253 (13%)

Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
           E  +  +             TL  A S D+ + +A      ++G  SK   H LR++ DA
Sbjct: 17  EPHLPPNNEPELPKSNLPFTTLTFATSLDSSLALAPGTRTTLSGPQSKAMTHYLRSRHDA 76

Query: 193 ILVGIGTVLADDPELTCRL-------NGLQEHSPMRIILDPHFKLSL--DSKII----KT 239
           IL+G+GT +AD+P L CR+              P  I++DP  +      SKI+    + 
Sbjct: 77  ILIGVGTAVADNPGLNCRIEGVGGYGGEGLLGQPRPIVIDPRARWDFTEQSKILELVKEG 136

Query: 240 ALLAPVIIVTENDDP--VLALAFRKKNINIIYCD---------CRDLKKLLTILVGRGVT 288
              AP II +   +P               I  D           D   +L  L   G+ 
Sbjct: 137 KGRAPFIITSTGTEPAAEKKALLESYGGKFIPLDLFLEEHGERRLDWTAVLECLRNEGLR 196

Query: 289 SLLVEGGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI---PSPLEEG---YLEKNFM 339
           S+++EGG  V +S +    + LV+S+I+  +   +G+GG+   P    EG          
Sbjct: 197 SVMIEGGGTVINSLLEPGWAHLVNSVIVTIAPTWLGQGGVVVSPRRRVEGDAVVPAARLR 256

Query: 340 CVRRDYFGSDVCL 352
            V+   FG DV L
Sbjct: 257 DVKWYPFGEDVVL 269


>gi|154148617|ref|YP_001405744.1| riboflavin biosynthesis protein RibD [Campylobacter hominis ATCC
           BAA-381]
 gi|153804626|gb|ABS51633.1| riboflavin biosynthesis protein RibD [Campylobacter hominis ATCC
           BAA-381]
          Length = 362

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 60/282 (21%), Positives = 107/282 (37%), Gaps = 57/282 (20%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQA----- 59
            D  +M+ AL+ +  +  LT  NP+V  +++ + G ++        G  HAEV A     
Sbjct: 2   QDEFYMNLALQKAWKNQLLTYPNPAVGAVVLDNAGKILSIEAHEKAGFAHAEVLAVFRAL 61

Query: 60  ------------------------------------------LEEAGEEARGATAYVTLE 77
                                                     ++   ++ +G   +VTLE
Sbjct: 62  ENSDRNFTLKFLNSYNKNFNSNFKDTKNLATEFNANFIYDFIIKNHADKLKGGKIFVTLE 121

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKI 136
           PCSH G++PPCA  I     +  V+   D + +++  G   L++ G+ +   + ++E +I
Sbjct: 122 PCSHLGKTPPCANLISALKFKDCVIGAKDEN-KIASGGAYILNKNGVNVKLGVCKNEAEI 180

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
            +  +   Q   +         +     G+A  G   I+   S+   H LRA SD +++G
Sbjct: 181 LISPFKKWQKNGKFVFFKLALSA----NGVACGGI--ISNEKSRIFSHKLRAISDLLIIG 234

Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
             TV  D P+L  RL      +P   I            +  
Sbjct: 235 GNTVRTDRPKLDTRLISST-KNPNIFIFSHLQNFDKTIPLFS 275


>gi|70607877|ref|YP_256747.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
           acidocaldarius DSM 639]
 gi|68568525|gb|AAY81454.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
           acidocaldarius DSM 639]
          Length = 214

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/216 (24%), Positives = 97/216 (44%), Gaps = 12/216 (5%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           ++ R +  +   +S D  +         ++  I K + H LRA+ DAI+VG  TV  D+P
Sbjct: 1   MKSRPYTIIFSTISIDGRLATKTG-YSELSCPIDKQRQHQLRAEVDAIMVGGNTVRIDNP 59

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
            LT +    ++  P+R+I+     L + SKI     L   ++ T++++        K+ +
Sbjct: 60  SLTVKYAKKKDKDPIRVIVSKSLNLDVSSKIFSIPPL--TVVYTKSENRSKQYELEKRGV 117

Query: 266 NIIYCDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            +   +  +L  + + L     V  L++EGG  +  S I+ +L D I +  S  + G  G
Sbjct: 118 VVRRFN--ELSDVFSDLYESFNVRRLMIEGGGNLIWSVIHEKLYDEIRVTVSPRIFG-NG 174

Query: 325 IPSPLEEGYL---EKNFMCV--RRDYFGSDVCLEYI 355
           +     EG+          V  +    G+++ L YI
Sbjct: 175 VSLAQGEGFQGDESPRLRLVDAKICQCGNEIHLVYI 210


>gi|119486680|ref|XP_001262326.1| riboflavin-specific deaminase [Neosartorya fischeri NRRL 181]
 gi|119410483|gb|EAW20429.1| riboflavin-specific deaminase [Neosartorya fischeri NRRL 181]
          Length = 627

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 106/234 (45%), Gaps = 31/234 (13%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            H+TL  A S D+ I +       ++G  +K   H LR++ DAIL+G+GTVLAD+P L C
Sbjct: 383 PHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAILIGVGTVLADNPGLNC 442

Query: 210 RLN-------GLQEHSPMRIILDPHFKLS--LDSKIIKTA----LLAPVIIVTEND--DP 254
           RL          +   P  +++DP  +     + ++++TA      AP +IV+      P
Sbjct: 443 RLEGAGGFGGLGRMWQPRPVVIDPTGRWPVHPECRMLRTAVEGKGKAPWVIVSPGAQIHP 502

Query: 255 VLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN---S 305
              +  +    + +     +       + +L  L   G+ S+++EGG  V    +N   +
Sbjct: 503 QKLMMLKGYGGDFLRIVEYNQNWRLRWEAILRALASEGIKSVMIEGGGTVLSELLNPEYT 562

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-------NFMCVRRDYFGSDVCL 352
           + +DSII+  +   +G GG+    +    E+       N   ++    G +V +
Sbjct: 563 QFIDSIIVTVAPTYLGRGGVGVSPDSKRDEQGKPNAALNPREIKWVPLGQNVIM 616


>gi|296114200|ref|ZP_06832855.1| riboflavin biosynthesis protein RibD [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295979276|gb|EFG85999.1| riboflavin biosynthesis protein RibD [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 357

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 77/315 (24%), Positives = 113/315 (35%), Gaps = 35/315 (11%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEE 66
            R   AA+  +  HVG T+ NP V C I+   G ++  G     G PHAE +A+    E 
Sbjct: 20  ERAFRAAVADAVRHVGATAPNPPVGCAILDAAGTILCTGAHHRAGTPHAEARAIALCRER 79

Query: 67  A---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
               R  T  VTLEPC+H GR+ PC+Q I+   IR V +   DP+  V+G G  +L   G
Sbjct: 80  GLIERAHTIVVTLEPCNHTGRTGPCSQAIMHTPIRTVWIGATDPNPNVAGGGADFLRDHG 139

Query: 124 II---------VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
                       D    +     L                               G    
Sbjct: 140 CDVRLLSDMGTYDAAELARLCRGLITPFAHLARTGRAWVTVKQAVDATGSMRPPAGRTTF 199

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           T   + +  H LR  +DA++   GT+ AD P L  R            + D   +    S
Sbjct: 200 TSATALDLAHRLRRATDAVVTATGTITADRPGLDVRR-----------VPDHPGR---AS 245

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           +++        +I T         A + +        C D++ L  +L   G    LVE 
Sbjct: 246 RLL--------VICTTRGQVDEQYATQARARGFDVRTCTDIRHLPDLLGRAGAMWALVEA 297

Query: 295 GAAVAHSFINSRLVD 309
           G  +  +       D
Sbjct: 298 GPGLLSAIREHATWD 312


>gi|28900546|ref|NP_800201.1| putative riboflavin deaminase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260365428|ref|ZP_05777965.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           K5030]
 gi|260877493|ref|ZP_05889848.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           AN-5034]
 gi|260894835|ref|ZP_05903331.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           Peru-466]
 gi|28808926|dbj|BAC62034.1| putative riboflavin deaminase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308085328|gb|EFO35023.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           Peru-466]
 gi|308090602|gb|EFO40297.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           AN-5034]
 gi|308114425|gb|EFO51965.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           K5030]
          Length = 141

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 56/126 (44%), Positives = 73/126 (57%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             FM  AL  S+  +     NP V C++VKD  ++  G T   G  HAEV+AL       
Sbjct: 3   QEFMRRALEVSKNALPECQPNPPVGCVLVKDNQIVSEGHTQAIGGNHAEVEALNAYQGSL 62

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
              TAYVTLEPCS  GR+P CA  +++ GI +VVV + DPD R SGRG++ L Q GI V+
Sbjct: 63  ESVTAYVTLEPCSFVGRTPACAVTLVKSGIGKVVVAMLDPDPRNSGRGIEILKQAGIEVE 122

Query: 128 RMMESE 133
             + SE
Sbjct: 123 IGLCSE 128


>gi|297155044|gb|ADI04756.1| bifunctional deaminase-reductase-like protein [Streptomyces
           bingchenggensis BCW-1]
          Length = 361

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 106/250 (42%), Gaps = 20/250 (8%)

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
             G+   + +  E +I    YL   +        ++  S D  I      +  +TG   +
Sbjct: 31  DGGLRWRQEVSPEVRILTDRYLPLCLAGPRLAVAQLGQSLDGFIATRTGDADYVTGEEDR 90

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
             +H LRA  DA++VG GT +ADDP+LT R       +P+R++LDPH ++    ++    
Sbjct: 91  AHLHHLRALVDAVVVGAGTAVADDPQLTVR--ACTGTNPVRVVLDPHGRVPSQRRVFIDG 148

Query: 241 LLAPVIIVTEND-----------DPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRG 286
               + +V  +            D          +++++    R   + + LL  L  RG
Sbjct: 149 SAPTLWVVAADSGRGGENGSVGVDGSGRHRGLGAHVDVLTLPDRAAFEPRSLLDALARRG 208

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM---CVRR 343
           +  +L+EGG      F++ R +D + +  + +++G+ G+P     G           +RR
Sbjct: 209 LGRVLIEGGGVTVSRFLHQRALDRLYVTVAPVLLGD-GVPGLRFAGTSVMRDALRPPMRR 267

Query: 344 DYFGSDVCLE 353
            + G D   E
Sbjct: 268 AHLGEDTLFE 277


>gi|121714261|ref|XP_001274741.1| riboflavin-specific deaminase [Aspergillus clavatus NRRL 1]
 gi|119402895|gb|EAW13315.1| riboflavin-specific deaminase [Aspergillus clavatus NRRL 1]
          Length = 629

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 57/236 (24%), Positives = 104/236 (44%), Gaps = 31/236 (13%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
              H+TL  A S D+ I +       ++G  +K   H LR++ DAIL+G+GT LAD+P L
Sbjct: 380 HLPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAILIGVGTALADNPGL 439

Query: 208 TCRLN-------GLQEHSPMRIILDPHFKLS--LDSKIIKTA----LLAPVIIVTEND-- 252
            CRL          +   P  +++DP  +     + ++++TA      AP +IV+     
Sbjct: 440 NCRLEGAGGFGGLGRMWQPRPVVIDPTGRWPVHPECRMLRTAVEGKGKAPWVIVSPGAQI 499

Query: 253 DPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN-- 304
            P   +  +    + +     +       + +L  L   G+ S+++EGG  V    +N  
Sbjct: 500 HPQKLMMLKGYGGDFLRIVEYNQNWRLRWEAILRALASEGIKSVMIEGGGTVLSELLNPE 559

Query: 305 -SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-------NFMCVRRDYFGSDVCL 352
            +  +DS+I+  +   +G GG+    +    E+       N   V+    G +V +
Sbjct: 560 YAEFIDSMIVTVAPTYLGRGGVGVSPDSKRDEEGKPNAALNPRDVKWMPLGQNVIM 615


>gi|303320915|ref|XP_003070452.1| RibD C-terminal domain containing protein [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240110148|gb|EER28307.1| RibD C-terminal domain containing protein [Coccidioides posadasii
           C735 delta SOWgp]
 gi|320033048|gb|EFW14997.1| riboflavin-specific deaminase [Coccidioides posadasii str.
           Silveira]
          Length = 611

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 102/238 (42%), Gaps = 31/238 (13%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
             K  H+TL  A S D  I +A      ++G  SK   H LR++ DAIL+G+GT LAD+P
Sbjct: 348 NRKFPHVTLTYAQSMDGKISLAPGVQTVLSGPESKLMTHYLRSRHDAILIGVGTALADNP 407

Query: 206 ELTCRLN-------GLQEHSPMRIILDPHFKLS--LDSKIIKTALL----APVIIVT--E 250
            L CRL          +   P  +I+DP  +     + +I+KTAL     AP ++V+   
Sbjct: 408 GLNCRLEGAGGYGGLGKMWQPRPVIVDPTGRWPINPECRILKTALAGKGKAPWVVVSPCA 467

Query: 251 NDDPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           N      L  +K   + +     +         +   L   G+ S++VEGG  V    +N
Sbjct: 468 NISADRILLLKKHGGDFLRISEFNPSWRLQWSTIFGALAAEGINSIMVEGGGVVLSELLN 527

Query: 305 ---SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-------RRDYFGSDVCL 352
                 VDS+I+  +   +G GG+    +    E     V       +    G DV +
Sbjct: 528 PEYEDFVDSVIVTVAPTYLGRGGVGVAPDSKRDEYGKPKVSLKPKEPKWHALGQDVIM 585


>gi|70982261|ref|XP_746659.1| riboflavin-specific deaminase [Aspergillus fumigatus Af293]
 gi|66844282|gb|EAL84621.1| riboflavin-specific deaminase [Aspergillus fumigatus Af293]
 gi|159122105|gb|EDP47227.1| riboflavin-specific deaminase [Aspergillus fumigatus A1163]
          Length = 622

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 59/234 (25%), Positives = 105/234 (44%), Gaps = 31/234 (13%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            H+TL  A S D+ I +       ++G  +K   H LR++ DAIL+G+GTVLAD+P L C
Sbjct: 378 PHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAILIGVGTVLADNPGLNC 437

Query: 210 RLN-------GLQEHSPMRIILDPHFKLS--LDSKIIKTA----LLAPVIIVTEND--DP 254
           RL          +   P  +++DP  +     + ++++TA      AP +IV+      P
Sbjct: 438 RLEGAGGFGGLGRMWQPRPVVIDPTGRWPVHPECRMLRTAVEGKGKAPWVIVSPGAQIHP 497

Query: 255 VLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN---S 305
              +  +    + +     +       + +L  L   G+ S+++EGG  V    +N   +
Sbjct: 498 QKLMMLKGYGGDFLRIVEYNQNWRLRWEAILRALASEGIKSVMIEGGGTVLSELLNPEYT 557

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-------NFMCVRRDYFGSDVCL 352
             +DSII+  +   +G GG+    E    E+       N   ++    G +V +
Sbjct: 558 EFIDSIIVTVAPTYLGRGGVGVSPESKRDEQGKPNAALNPREIKWVPLGQNVIM 611


>gi|262277170|ref|ZP_06054963.1| hypothetical protein HIMB114_0582 [alpha proteobacterium HIMB114]
 gi|262224273|gb|EEY74732.1| hypothetical protein HIMB114_0582 [alpha proteobacterium HIMB114]
          Length = 357

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 80/297 (26%), Positives = 128/297 (43%), Gaps = 8/297 (2%)

Query: 16  RFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVT 75
           + S  +   T  NP V    +     I   VT   G PHAE  AL +  ++      Y +
Sbjct: 19  KLSEINQFETFPNPCVGAAGIDKNNHIHLAVTGKNGSPHAEF-ALLKNKKKNFINELYTS 77

Query: 76  LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135
           LEPC H G++P C+  II+  ++++     D D RV G+  + L +K I +    +    
Sbjct: 78  LEPCCHIGKNPSCSNLIIKKKVKKIFSSSIDLDERVKGKTNRLLKKKNISLKYTKQPSKP 137

Query: 136 IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195
             LH Y      ++ ++  KIA S D             T   +    HLLR QSD+IL+
Sbjct: 138 SILHNYCN--SNQKPYVVAKIASSSDFYSKHKFKRLFTSTS--ALKFAHLLRYQSDSILI 193

Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
           G  T+  D+P L CRLNG+++   + II   +  L  + K+     L    +     +  
Sbjct: 194 GKNTINHDNPSLNCRLNGIEKKIAIFII---NKNLFFNKKVFLNNNLKGSYVFHSEKNKT 250

Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
                 K    I +   + +  LL I+   G   LL+EGGA     F+  + ++ + 
Sbjct: 251 KIKKVGKFFKLIYFDLNQPINDLLKIVYQLGYKKLLIEGGANTLRYFLKGKCINELY 307


>gi|83775268|dbj|BAE65390.1| unnamed protein product [Aspergillus oryzae]
          Length = 286

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/236 (25%), Positives = 107/236 (45%), Gaps = 31/236 (13%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           +  H+TL  A S D+ I +       ++G  +K   H LR++ DAIL+G+GTVLAD+P L
Sbjct: 29  QFPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAILIGVGTVLADNPGL 88

Query: 208 TCRLN-------GLQEHSPMRIILDPHFKLS--LDSKIIKTA----LLAPVIIVTEND-- 252
            CRL          +   P  +I+DP  +     + ++++TA      AP ++V+     
Sbjct: 89  NCRLEGAGGFGGLGRMWQPRPVIIDPTGRWPVHPECRMLRTAVEGKGKAPWVVVSPGAQI 148

Query: 253 DPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN-- 304
            P   +  +    + +     +       + +L  L   GV S+++EGG  V    +N  
Sbjct: 149 HPQKLMMLKGYGGDFLRIVEYNQNWRLRWEAILRALASEGVKSVMIEGGGTVLSELLNPE 208

Query: 305 -SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-------NFMCVRRDYFGSDVCL 352
            +  +DSII+  +   +G GG+P   +    E+       N   V+    G +V +
Sbjct: 209 YTEFIDSIIVTVAPTYLGSGGVPVSPDSKRDEQGKPNAALNPREVKWVPLGQNVIM 264


>gi|312220526|emb|CBY00467.1| similar to 5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Leptosphaeria maculans]
          Length = 273

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/259 (24%), Positives = 102/259 (39%), Gaps = 43/259 (16%)

Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
            SE               +  +TL  A S D+ + +A      ++G  SK   H LR++ 
Sbjct: 13  NSEQIDPYITQPNHSSHSKPFVTLTFATSLDSQLSLAPGVQTALSGPDSKAMTHYLRSKH 72

Query: 191 DAILVGIGTVLADDPELTCRL-------NGLQEHSPMRIILDPHFKL--SLDSKIIKTAL 241
           DAIL+G+GT +ADDP L CR+           E  P  +I+DP  +   + +SK+++ A 
Sbjct: 73  DAILIGVGTAIADDPSLNCRIGGVGGYGGEGLEGQPRPVIIDPKCRWEFTEESKVMRLAR 132

Query: 242 L----APVIIVTENDDPVLALAFRKKNINII---------YCDCRDLKKLLTILVGRGVT 288
                AP +I                   ++              +   LL  L    + 
Sbjct: 133 ERKGKAPWVITQTEMSEGKRRILESVGGKVLAVCSVPALPVTASSEWDDLLKALAREEIR 192

Query: 289 SLLVEGGAAVAHSFINS---RLVDSIILYRSQIVIGEGGI------------PSPLEEGY 333
           S+++EGG  + +  + +    LVDS+I+  +   +GEGG+            P P+    
Sbjct: 193 SVMIEGGGRIINDLLGAKNFNLVDSVIVTIAPTWLGEGGVQVCPERRMENGRPLPVG--- 249

Query: 334 LEKNFMCVRRDYFGSDVCL 352
                  VR    G DV L
Sbjct: 250 ---RLTDVRWIPLGEDVVL 265


>gi|302348951|ref|YP_003816589.1| Pyrimidine nucleotide reductase [Acidilobus saccharovorans 345-15]
 gi|302329363|gb|ADL19558.1| Pyrimidine nucleotide reductase [Acidilobus saccharovorans 345-15]
          Length = 215

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 7/177 (3%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            +  +   +S D  I         ++        H LRA SDA+LVG  T + D+P LT 
Sbjct: 3   PYTIIFSTMSVDGRIATEEG-FSRLSCDEDFKIQHELRAWSDAVLVGANTAIKDNPSLTV 61

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
           R       +P+R+++D   K+     +        VII TE+ +      ++++ I II 
Sbjct: 62  R--KAVGKNPLRVVVDASLKVPPTLDMFSIPGKG-VIITTEDHNGEELAKYKERGIVIIR 118

Query: 270 C---DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
                  DL+  +  L   GV  L++EGG   ++ F+   LVD + +  S IV G G
Sbjct: 119 AGVGPEVDLRTAVRALFEMGVRRLMIEGGGTTSYRFLKEGLVDELWITLSPIVFGSG 175


>gi|322380244|ref|ZP_08054465.1| riboflavin-specific deaminase/reductase [Helicobacter suis HS5]
 gi|321147322|gb|EFX42001.1| riboflavin-specific deaminase/reductase [Helicobacter suis HS5]
          Length = 353

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 151/386 (39%), Gaps = 78/386 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59
           +P+       M A ++ +     L   NPSVAC+I+     ++     +    PHAEV+A
Sbjct: 6   LPLLMLTEILMRACIQHAYKSQTLALPNPSVACMILDQHHNILALQDHSQANTPHAEVRA 65

Query: 60  LEEAGEEA-----------------------------RGATAYVTLEPCSHYGRSPPCAQ 90
           L++A  +                              +  T  VTLEPC+H+G++PPCA 
Sbjct: 66  LKDAYNKLSPTPFPKEINSKDREQTYQFLSKHHNNLFKDCTLLVTLEPCNHFGKTPPCAA 125

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKR 149
            + +   ++V++   +   +  G GL  L + GI ++  ++E EG+  L+ +   + +  
Sbjct: 126 LLAQIKPKKVIISCLETHKKAMG-GLACLKEAGIEVITGVLEKEGRALLYPFKCLEQKGV 184

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++             + G     I+  +S+   H  R+ ++ +++   +V +D P L  
Sbjct: 185 FNLFKIALR-------LNGSFEGKISEELSQIFTHTQRSIANYLIISGQSVRSDRPTLDS 237

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
           RL+   +  P   IL                        T   DP + L   +K    I 
Sbjct: 238 RLSAYTKRPPNVAILTRD---------------------TTPFDPTIPLFQVEKRQVQIC 276

Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE-GGIPSP 328
               +L       + +G    ++EGG  +  S    + VD ++++++  + G       P
Sbjct: 277 HQVEELP------LQQGFN--IIEGGWDLFVSL--QKHVDMLLIHQNSTLAGSLKSTKMP 326

Query: 329 LEEGYLEKNFMCVRRDYFGSDVCLEY 354
           L      K+F        G D  LE+
Sbjct: 327 L------KSFTFCHSQLLGPD-LLEW 345


>gi|313126634|ref|YP_004036904.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3h)-one reductase
           [Halogeometricum borinquense DSM 11551]
 gi|312292999|gb|ADQ67459.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Halogeometricum borinquense DSM 11551]
          Length = 220

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 14/218 (6%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            H+ +  A S D  +       + I+G     +V  +RA SDA+LVG+GTVLADDP LT 
Sbjct: 1   MHVVVNAATSADGKLSTRRREQIKISGADDFARVDRVRADSDAVLVGVGTVLADDPHLTV 60

Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
                   R +  +E  P R++ D   +   D++I+  A     ++V+E+       A  
Sbjct: 61  DDADYRDERQSDGREPHPARVVADSRARTPTDARILDDA-ATTYVLVSESAPADRVSALE 119

Query: 262 KKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
           K    ++          +    L  RG+  L+VEGG  V  S     LVD + +Y   +V
Sbjct: 120 KTGGTVVTAGDTRVSFPEAFAELEARGIDRLMVEGGGEVIFSLFEDELVDELSVYVGSVV 179

Query: 320 IGEGGIPSPLEEGYLEKNFMCV---RRDYFGSDVCLEY 354
           +G    P+  +     ++F  +     +     V L Y
Sbjct: 180 LGGRDAPTLADGDGFVESFPTLDLRDVERIDDGVLLTY 217


>gi|119179569|ref|XP_001241355.1| hypothetical protein CIMG_08518 [Coccidioides immitis RS]
          Length = 612

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 102/238 (42%), Gaps = 31/238 (13%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
             K  H+TL  A S D  I +A      ++G  SK   H LR++ DAIL+G+GT LAD+P
Sbjct: 348 NRKFPHVTLTYAQSMDGKISLAPGVQTVLSGPESKLMTHYLRSRHDAILIGVGTALADNP 407

Query: 206 ELTCRLN-------GLQEHSPMRIILDPHFKLS--LDSKIIKTALL----APVIIVT--E 250
            L CRL          +   P  +I+DP  +     + +I+KTAL     AP ++V+   
Sbjct: 408 GLNCRLEGAGGYGGLGKMWQPRPVIVDPTGRWPINPECRILKTALAGKGKAPWVVVSPCA 467

Query: 251 NDDPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           N      L  +K   + +     +         +   L   G+ S++VEGG  V    +N
Sbjct: 468 NISADRILLLKKHGGDFLRISEFNPSWRLQWSTIFGALAAEGINSIMVEGGGVVLSELLN 527

Query: 305 ---SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-------RRDYFGSDVCL 352
                 VDS+I+  +   +G GG+    +    E     V       +    G DV +
Sbjct: 528 PEYEDFVDSVIVTVAPTYLGRGGVGVAPDSKRDEYGKPKVSLKPKEPKWHALGQDVIM 585


>gi|91225503|ref|ZP_01260625.1| putative riboflavin deaminase [Vibrio alginolyticus 12G01]
 gi|269968858|ref|ZP_06182841.1| putative riboflavin deaminase [Vibrio alginolyticus 40B]
 gi|91189866|gb|EAS76139.1| putative riboflavin deaminase [Vibrio alginolyticus 12G01]
 gi|269826538|gb|EEZ80889.1| putative riboflavin deaminase [Vibrio alginolyticus 40B]
          Length = 141

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 55/126 (43%), Positives = 72/126 (57%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             FM  AL  S+  +     NP V C++VKD  ++  G T   G  HAEV+AL       
Sbjct: 3   QEFMRRALEVSKNALPECQPNPPVGCVLVKDNQIVSEGHTQAIGGNHAEVEALNAYQGSL 62

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
              TAYVTLEPCS  GR+P CA  +++ GI +VVV + DPD R SGRG++ L Q GI V+
Sbjct: 63  ESVTAYVTLEPCSFVGRTPACAVTLVKSGISKVVVAILDPDPRNSGRGIEILKQAGIEVE 122

Query: 128 RMMESE 133
             +  E
Sbjct: 123 TGLCGE 128


>gi|328470490|gb|EGF41401.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
           parahaemolyticus 10329]
          Length = 141

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 55/126 (43%), Positives = 72/126 (57%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             FM  AL  S+  +     NP V C++VKD  ++  G T   G  HAEV+AL       
Sbjct: 3   QEFMRRALEVSKNALPECQPNPPVGCVLVKDNQIVSEGHTQAIGGNHAEVEALNAYQGSL 62

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
              TAYVTLEPCS  GR+P CA  +++ GI +VVV + DPD R SGRG++ L Q GI V+
Sbjct: 63  ESVTAYVTLEPCSFVGRTPACAVTLVKSGIGKVVVAMLDPDPRNSGRGIEILKQAGIEVE 122

Query: 128 RMMESE 133
             +  E
Sbjct: 123 IGLCGE 128


>gi|330447671|ref|ZP_08311319.1| cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491862|dbj|GAA05816.1| cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 146

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 61/146 (41%), Positives = 79/146 (54%), Gaps = 1/146 (0%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M     +  FM  AL  S   +     NP V C++VKDG ++  G T   G  HAE  AL
Sbjct: 1   MSGDHQEQAFMMRALLLSHQALPACRPNPPVGCVLVKDGQIVSEGFTQRPGHHHAEAMAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              GE     TAYVTLEPCS  GR+P CA  ++E GI++VVV   DPD R SG+G+  L 
Sbjct: 61  ANYGESLDDVTAYVTLEPCSFVGRTPSCAHTLVERGIKKVVVATLDPDTRNSGKGIAVLE 120

Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQ 145
           Q G+ +   + E+E   F+  YL R 
Sbjct: 121 QAGVEVEVGLCENEVLDFIEPYLIRN 146


>gi|322378922|ref|ZP_08053338.1| Riboflavin-specific deaminase / reductase (RibD) [Helicobacter suis
           HS1]
 gi|321148664|gb|EFX43148.1| Riboflavin-specific deaminase / reductase (RibD) [Helicobacter suis
           HS1]
          Length = 353

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 151/386 (39%), Gaps = 78/386 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59
           +P+       M A ++ +     L   NPSVAC+I+     ++     +    PHAEV+A
Sbjct: 6   LPLLMLTEILMRACIQHAYKSQTLALPNPSVACMILDQHHNILALQDHSQANTPHAEVRA 65

Query: 60  LEEAGEEA-----------------------------RGATAYVTLEPCSHYGRSPPCAQ 90
           L++A  +                              +  T  VTLEPC+H+G++PPCA 
Sbjct: 66  LKDAYNKLSPTPFPKEINSKDREQTYQFLSKHHNNLFKDCTLLVTLEPCNHFGKTPPCAA 125

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKR 149
            + +   ++V++   +   +  G GL  L + GI ++  ++E EG+  L+ +   + +  
Sbjct: 126 LLAQIKPKKVIISCLETHKKAMG-GLACLKEAGIEVITGVLEKEGRALLYPFKCLEQKGV 184

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++             + G     I+  +S+   H  R+ ++ +++   +V +D P L  
Sbjct: 185 FNLFKIALR-------LNGSFEGKISEELSQIFTHTQRSIANYLIISGQSVRSDRPTLDS 237

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
           RL+   +  P   IL                        T   DP + L   +K    I 
Sbjct: 238 RLSAYTKRPPNVAILTRD---------------------TTPFDPTVPLFQVEKRQVQIC 276

Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE-GGIPSP 328
               +L       + +G    ++EGG  +  S    + VD ++++++  + G       P
Sbjct: 277 HQVEELP------LQQGFN--IIEGGWDLFVSL--QKHVDMLLIHQNSTLAGSLKSTKMP 326

Query: 329 LEEGYLEKNFMCVRRDYFGSDVCLEY 354
           L      K+F        G D  LE+
Sbjct: 327 L------KSFTFCHSQLLGPD-LLEW 345


>gi|154486847|ref|ZP_02028254.1| hypothetical protein BIFADO_00679 [Bifidobacterium adolescentis
           L2-32]
 gi|154084710|gb|EDN83755.1| hypothetical protein BIFADO_00679 [Bifidobacterium adolescentis
           L2-32]
          Length = 269

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 110/290 (37%), Gaps = 51/290 (17%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
             +M+ AL  +R   G    NP V  ++V  G V+  G       PHAE  A + A   G
Sbjct: 12  REYMAQALELARKGAGWVDPNPLVGAVVVSGGEVLATGYHDRYRGPHAERMAFDYADAHG 71

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            +  GAT   TLEPC H G  P C   I+  GI RVVV   DP+  V+G+GL+ L + G+
Sbjct: 72  IDLTGATVIDTLEPCCHVGSQPACTDLILAHGIARVVVGSVDPNPIVAGKGLRILEEAGV 131

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +V  +M  E       +       + +I      + ++            + +  + + 
Sbjct: 132 EVVRDVMREECDAINRHFFHYITTGKPYIVDGRRRAGESD-----------SEYAVRRR- 179

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
             L A   A+L G  + + D+       NG     P++ +                    
Sbjct: 180 -ELYATYAAVLAGTESDVPDESF--AHFNG-----PVQAV-------------------- 211

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
                    D V+    R   +      C D  + L+ L  R +  L+VE
Sbjct: 212 -------GADEVVIGGHRPLLLEAGALACTDPDEWLSELGKRKIDGLIVE 254


>gi|307111161|gb|EFN59396.1| hypothetical protein CHLNCDRAFT_137887 [Chlorella variabilis]
          Length = 181

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 61/148 (41%), Positives = 83/148 (56%), Gaps = 2/148 (1%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALE 61
           V+  D   M  AL  +   +G T  NP+V C+IV   G V+G G     G PHAEV AL 
Sbjct: 27  VTEADRLHMRRALELAARGLGATYPNPAVGCVIVDASGRVLGEGFHPRAGMPHAEVYALR 86

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG  A GATAYVTLEPC+H+GR+PPC++ ++  G+ RVVV   DP+  V G G++ L  
Sbjct: 87  AAGRAAAGATAYVTLEPCNHFGRTPPCSRALVAAGVSRVVVGCTDPNPLVGGCGVKTLRD 146

Query: 122 KGIIVDRMMESE-GKIFLHAYLTRQVEK 148
            GI+     E +        ++ R  E+
Sbjct: 147 AGIVAAVGCEQQACYQLNEEFMVRMQEQ 174


>gi|153836433|ref|ZP_01989100.1| diaminohydroxyphosphoribosylamino-pyrimidine deaminase [Vibrio
           parahaemolyticus AQ3810]
 gi|260901767|ref|ZP_05910162.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           AQ4037]
 gi|149750335|gb|EDM61080.1| diaminohydroxyphosphoribosylamino-pyrimidine deaminase [Vibrio
           parahaemolyticus AQ3810]
 gi|308108841|gb|EFO46381.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
           AQ4037]
          Length = 141

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 57/135 (42%), Positives = 74/135 (54%), Gaps = 1/135 (0%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             FM  AL  S+  +     NP V C++VKD  ++  G T   G  HAEV+AL       
Sbjct: 3   QEFMRRALEVSKNALPECQPNPPVGCVLVKDNQIVSEGHTQAIGGNHAEVEALNAYQGSL 62

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
              TAYVTLEPCS  GR+P CA  +++ GI +VVV + DPD R SGRG++ L Q GI + 
Sbjct: 63  ESVTAYVTLEPCSFVGRTPACAVTLVKSGIGKVVVAMLDPDPRNSGRGIEILKQAGIEVE 122

Query: 127 DRMMESEGKIFLHAY 141
             +   E   FL  Y
Sbjct: 123 IGLCGKEVSEFLTPY 137


>gi|269961115|ref|ZP_06175483.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834066|gb|EEZ88157.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 159

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 55/126 (43%), Positives = 77/126 (61%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            +FM  AL  SR  +     NP V C++VKDG ++  G T   G  HAEV+AL+    + 
Sbjct: 21  QQFMLRALEVSRNALPACQPNPPVGCVLVKDGEIVSEGHTQAIGGNHAEVEALKAYNGDL 80

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
              TAYVTLEPCS  GR+P CA+ ++ CGI++VVV + DPD R +GRG+  L + G+ V+
Sbjct: 81  SDVTAYVTLEPCSFVGRTPACAKTLVTCGIKKVVVAMLDPDPRNAGRGIDILKEGGVEVE 140

Query: 128 RMMESE 133
             +  E
Sbjct: 141 IGLCGE 146


>gi|254229831|ref|ZP_04923237.1| Pyrimidine deaminase [Vibrio sp. Ex25]
 gi|262395603|ref|YP_003287456.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio sp.
           Ex25]
 gi|151937667|gb|EDN56519.1| Pyrimidine deaminase [Vibrio sp. Ex25]
 gi|262339197|gb|ACY52991.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio sp.
           Ex25]
          Length = 141

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 55/126 (43%), Positives = 72/126 (57%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             FM  AL  S+  +     NP V C++VKD  ++  G T   G  HAEV+AL       
Sbjct: 3   HEFMRRALEVSKNALPECQPNPPVGCVLVKDNQIVSEGHTQAIGGNHAEVEALNAYQGSL 62

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
              TAYVTLEPCS  GR+P CA  +++ GI +VVV + DPD R SGRG++ L Q GI V+
Sbjct: 63  ESVTAYVTLEPCSFVGRTPACAVTLVKSGIGKVVVAMLDPDPRNSGRGIEILKQAGIEVE 122

Query: 128 RMMESE 133
             +  E
Sbjct: 123 IGLCGE 128


>gi|121712499|ref|XP_001273861.1| riboflavin biosynthesis protein Rib7, putative [Aspergillus
           clavatus NRRL 1]
 gi|119402013|gb|EAW12435.1| riboflavin biosynthesis protein Rib7, putative [Aspergillus
           clavatus NRRL 1]
          Length = 279

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 66/253 (26%), Positives = 103/253 (40%), Gaps = 33/253 (13%)

Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
           E  +          +     TL  A S D+ + ++      ++G  SK   H LR++ DA
Sbjct: 21  EPHLPPQNATFSTTKTLPFTTLTFATSLDSSLALSPGARTVLSGPQSKAMTHFLRSRHDA 80

Query: 193 ILVGIGTVLADDPELTCRLNGLQEH-------SPMRIILDPHFKLSLD--SKIIK----T 239
           IL+G+GT +ADDP L CR+ G+  +        P  II+DP  +      SKI+      
Sbjct: 81  ILIGVGTAVADDPGLNCRIQGVGGYGADGLQGQPRPIIIDPSCRWDFTESSKILSLVREG 140

Query: 240 ALLAPVIIVTENDDP-VLALAFRKKNINIIYCDC---------RDLKKLLTILVGRGVTS 289
               P II      P        +     I  D           D   +L  L   G+ S
Sbjct: 141 RGRGPFIITGVQSPPSERKALLERHGGKFITLDAMTTAAGEHRMDWSVVLECLKTEGLGS 200

Query: 290 LLVEGGAAVAHSFIN---SRLVDSIILYRSQIVIGEGG-IPSPL------EEGYLEKNFM 339
           ++VEGG  + +S ++     L+DS+I+  +   +G+GG + SP        E        
Sbjct: 201 VMVEGGGTIINSLLDPSSQHLIDSVIVTIAPTWLGQGGVVVSPKRRFDARGEAIPASRLT 260

Query: 340 CVRRDYFGSDVCL 352
            V+   FG DV +
Sbjct: 261 EVKWYPFGEDVVM 273


>gi|220920297|ref|YP_002495598.1| bifunctional deaminase-reductase domain-containing protein
           [Methylobacterium nodulans ORS 2060]
 gi|219944903|gb|ACL55295.1| bifunctional deaminase-reductase domain protein [Methylobacterium
           nodulans ORS 2060]
          Length = 255

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 6/177 (3%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             +  +  ++  S D  I      S  I    + + +H LRA  DAI+VGIGTVLADDP 
Sbjct: 43  CDQPFVIAQLGQSLDGRIATLSGDSKYINRGAALDHLHRLRAHVDAIVVGIGTVLADDPR 102

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
           LT R   +   SP RI++DP  ++   ++ ++   +  +++      P   +    + + 
Sbjct: 103 LTVRR--VAGRSPARIVIDPAGRIPAQAQCLREDGVRRIVVCR----PDTRIPACAEALR 156

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           I   +    + L++ L   G   +L+EGGA     FI++  +D + L  + +++G G
Sbjct: 157 IEAPEAFPPQALVSALGRLGFRRILIEGGARTISGFIDAGAIDRLHLMVAPLLLGSG 213


>gi|126732575|ref|ZP_01748373.1| riboflavin biosynthesis protein RibD [Sagittula stellata E-37]
 gi|126707021|gb|EBA06089.1| riboflavin biosynthesis protein RibD [Sagittula stellata E-37]
          Length = 198

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 56/194 (28%), Positives = 84/194 (43%), Gaps = 10/194 (5%)

Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231
             ITG  +++ VH LRA  DA+LVG GT  AD+P LT R    +   P+RI+   H  L 
Sbjct: 2   QWITGPEARHAVHALRATHDAVLVGGGTARADNPRLTVRGYD-RSRPPVRIVASRHLDLP 60

Query: 232 LDSKIIKTALLAPVIIVTENDDP-VLALAFRKKNINIIYCD----CRDLKKLLTILVGRG 286
           L S + +TA   PV +    D    L  A+      ++         D   LL +L   G
Sbjct: 61  LLSDLARTAKDVPVWLCHGADARGDLVTAWEGIGARLMTVPLAGGRLDAAALLKVLGQEG 120

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVR 342
           +T +  EGG  +A S +   LVD + +  + + +G  G P      ++       F  V 
Sbjct: 121 LTRVFCEGGGQLAASLLAQDLVDELHVLTAGLALGAEGHPGIGALGVDRLGEAPRFTLVD 180

Query: 343 RDYFGSDVCLEYIG 356
               G D+   +  
Sbjct: 181 VCRRGMDIQHVWRR 194


>gi|154273018|ref|XP_001537361.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150415873|gb|EDN11217.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 531

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 58/238 (24%), Positives = 104/238 (43%), Gaps = 31/238 (13%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
             +   +TL  A S D+ + +       ++G  +K   H LR++ DAIL+G+G  + D+P
Sbjct: 237 NRQFPFVTLTYASSMDSKVSLFPGVQTALSGPETKLMTHYLRSRHDAILIGVGAAMVDNP 296

Query: 206 ELTCRL-------NGLQEHSPMRIILDPHFKLS--LDSKIIKTALL----APVIIVTEND 252
            L CRL          +   P  II+DP  +     + +++KTA      AP ++V+   
Sbjct: 297 GLNCRLTGSGGFGGLGKMWQPRPIIVDPTGRWPADPECRLLKTAKEGKGKAPWVVVSPGA 356

Query: 253 D--PVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           +  P   LA +    + +     +       + +L  L   G+TS+++EGGA V    +N
Sbjct: 357 NIQPAKVLALKNHGGDYLRIVEYNQSWRLRWEAILRALGTEGITSVMIEGGATVISELLN 416

Query: 305 S---RLVDSIILYRSQIVIGEGGI-------PSPLEEGYLEKNFMCVRRDYFGSDVCL 352
                 VDS+I+  +   +G+GG+            +     N   ++    G DV +
Sbjct: 417 PEYVDFVDSLIITVAPTFLGQGGVGVSPDAKKDNTGKPISALNPRDIKWQPLGQDVVM 474


>gi|237752793|ref|ZP_04583273.1| riboflavin biosynthesis protein RibD [Helicobacter winghamensis
           ATCC BAA-430]
 gi|229376282|gb|EEO26373.1| riboflavin biosynthesis protein RibD [Helicobacter winghamensis
           ATCC BAA-430]
          Length = 348

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 74/383 (19%), Positives = 130/383 (33%), Gaps = 70/383 (18%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           A ++   L+ +      T  NP+VA L++  +G ++        G PHAEV AL++A   
Sbjct: 4   AFYLDLCLQCAWKEQLKTLPNPAVAALVLDENGAIVSLESHKECGKPHAEVLALQKAYAA 63

Query: 67  ARGATA---------------------------YVTLEPCSH--YGRSPPCAQFIIECGI 97
             G  A                           YVTLEPCS    G++P CA  +     
Sbjct: 64  LSGDNAILSLKESQAIHSYLLKNAIPIFKDTMLYVTLEPCSSNKKGKTPSCATLLKTLKP 123

Query: 98  RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
           + V++   D D + +  G Q L + GI V +  E E    +H      +     +  +  
Sbjct: 124 KCVIIATQDCD-KSAKGGAQELIEAGICVIKAWEVEALQAIHKQANALLLPFRLLQTQGK 182

Query: 158 VSQDNMIGMAGCGSV--PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215
                             I+   +++ +H  R ++D +L+   +V  D+P L  R   L+
Sbjct: 183 FMLFKYASRLDGSIDGGQISTHQAQSLMHDYRTKADVLLISGESVRVDNPRLDTRFATLE 242

Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275
           + +P   IL         + +                              I       L
Sbjct: 243 QRNPNVAILTRQKDFPKSAPLF----------------------------EIPNRKVEIL 274

Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
             L  +    G   +  EGG+ +  +      +D  ++  S     +  +        L 
Sbjct: 275 HSLEQVKALHGF--IFCEGGSGLFKAL--QNSMDLTLVILSPNFKRDSNLT-----MSLN 325

Query: 336 KNFMCVRRDYFGSDVCLEYIGKN 358
            NF  +  +    D+ L  I K+
Sbjct: 326 ANFNLLHSEQIADDIFLWLIPKD 348


>gi|34558827|gb|AAQ75171.1| riboflavin biosynthesis protein [Alvinella pompejana epibiont 7G3]
          Length = 335

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 78/340 (22%), Positives = 125/340 (36%), Gaps = 68/340 (20%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  FM  A+  +  +  +T  NP+V  L+  +G V+        G  HAEV  L  A EE
Sbjct: 4   DDIFMRVAIDRAWEYQLITYPNPAVGALVELNGRVLAVEAHREAGTSHAEVLVLLRAYEE 63

Query: 67  -----------------------ARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                                   RG     + YVTLEPCSH G++P CA  + +   +R
Sbjct: 64  LSNRKIEFNRLDANLAHNFLLSLPRGFFSNCSIYVTLEPCSHTGKTPSCATLLSKLKPKR 123

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
           VVV   DP    SG      S    +   ++E E +  +  ++  Q      +  KIA +
Sbjct: 124 VVVGTLDPISSHSGGVELLKSVGVEVEVGVLEREAEELIEPFIIWQKRAF--VIFKIAQT 181

Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219
            +  I     G   ++   S   +H +R++   +++G  TV  D P L CR  G      
Sbjct: 182 SNGRI-----GGGYLSSKESLTHLHKIRSKLSWLIIGGNTVRVDRPTLDCRFIGAN---- 232

Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279
                        D  I+          + E D  +       + + I+  D      L 
Sbjct: 233 -----------PPDIAILSKKS------LDEFDKTIPLFNIEDRIVEILSSDIFKKPSL- 274

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
                     +LVEGG     +  +    D ++ Y++  +
Sbjct: 275 ----------ILVEGGEGTIGALRDK--FDWLLQYQTPKI 302


>gi|296819637|ref|XP_002849879.1| riboflavin-specific deaminase [Arthroderma otae CBS 113480]
 gi|238840332|gb|EEQ29994.1| riboflavin-specific deaminase [Arthroderma otae CBS 113480]
          Length = 630

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 107/238 (44%), Gaps = 26/238 (10%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
             +  H+TL  A S D  I         ++G  +K   H LR++ DAI++G+GT LADDP
Sbjct: 366 NPRFPHVTLTYAQSMDGKISTKPGVQTVLSGPETKAMTHYLRSRHDAIIIGLGTALADDP 425

Query: 206 ELTCRLNGLQE-------HSPMRIILDPHFKLS--LDSKIIKTALL----APVIIVTEND 252
            L CRL G            P  +I+DP  +     +S+++KTA      AP +IV+   
Sbjct: 426 GLNCRLEGAGGFGGFGTMWQPRPVIIDPTGRWPASPESRLLKTAAEGKGKAPWVIVSPGA 485

Query: 253 D--PVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           +  P   L  ++   + +     +       + +   L  +G+ SL++EGG  V    +N
Sbjct: 486 ELHPEKLLLLKRHGGDYLRIREYNPHWRLRWEAIFGALANQGIQSLMIEGGGVVLSELLN 545

Query: 305 S---RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
                 +DS+I+  +   +G GG+ +  +     +         +  D+  + +GK++
Sbjct: 546 PEYVDFIDSVIVTVAPTYVGRGGVSASPDSKQDGEGKPINALTPY--DIKWQPLGKDV 601


>gi|67541631|ref|XP_664583.1| hypothetical protein AN6979.2 [Aspergillus nidulans FGSC A4]
 gi|40742435|gb|EAA61625.1| hypothetical protein AN6979.2 [Aspergillus nidulans FGSC A4]
 gi|259483715|tpe|CBF79332.1| TPA: riboflavin-specific deaminase (AFU_orthologue; AFUA_4G04730)
           [Aspergillus nidulans FGSC A4]
          Length = 609

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 60/234 (25%), Positives = 104/234 (44%), Gaps = 31/234 (13%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            H+TL  A S D+ I +       ++G  +K   H LR++ DAIL+G+GTVLAD+P L C
Sbjct: 362 PHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAILIGVGTVLADNPGLNC 421

Query: 210 RLN-------GLQEHSPMRIILDPHFKLSL--DSKIIKTA----LLAPVIIVTEND--DP 254
           RL          +   P  +I+DP  + S   DS++++TA      AP ++V+      P
Sbjct: 422 RLQGAGGFGGLGRMWQPRPVIIDPTGRWSPGADSRLLRTAVEGKGRAPWVVVSPGAQIHP 481

Query: 255 VLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN---S 305
              L  +      +             + +   L   G+ S+++EGG  V    +N   +
Sbjct: 482 SKLLMLKGYGGEFLRIMEYHQNWRLRWESIFRALASEGIKSVMIEGGGRVLSELLNPEYA 541

Query: 306 RLVDSIILYRSQIVIGEGGI---PSPLEEGYLEKNF----MCVRRDYFGSDVCL 352
             +DS+++  +   +G GG+   P    +   + N       V+    G +V +
Sbjct: 542 EFIDSLVVTLAPTYLGSGGVGVSPDSKSDAQGKPNAALNPRDVKWVPLGQNVIM 595


>gi|302529252|ref|ZP_07281594.1| bifunctional enzyme deaminase/reductase [Streptomyces sp. AA4]
 gi|302438147|gb|EFL09963.1| bifunctional enzyme deaminase/reductase [Streptomyces sp. AA4]
          Length = 371

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 56/218 (25%), Positives = 90/218 (41%), Gaps = 12/218 (5%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           +  R H+ L  A S D  +  AG   + ++      +V  LRA++DAILVG GTV AD+P
Sbjct: 4   MTGRPHVLLSAAQSLDGYLDDAGSTRLLLSNEDDFAEVDRLRAEADAILVGAGTVRADNP 63

Query: 206 ELTCRLNGLQ--------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
            L  R   L+           P+++ +    KL   S+         ++          A
Sbjct: 64  RLLVRSAELRRARVAAGRPEQPVKVTVTSSGKLDPASRFFTLGDTEKLVYAPRGS----A 119

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
            +       +       L+ +L  L  RG+ +LLVEGG AV   F+++ L D + L  + 
Sbjct: 120 DSLSAVATVVEVGSPPRLESVLDDLGARGIRTLLVEGGGAVHTQFLDAGLADELRLAIAP 179

Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           +++G+   P  L  G   +          G    L Y 
Sbjct: 180 VMVGDPRAPRFLGPGAFPRPLELTELRRLGDVAVLRYR 217



 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 10/127 (7%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCPH--AEVQAL 60
           SS D   +  A+  +      ++    V  ++ + DG V+  G  +  G PH  AE  AL
Sbjct: 223 SSLDLLRLRQAIDLADECPPSST--FRVGAVVGLPDGTVLATG-HSGEGDPHNHAEESAL 279

Query: 61  EE---AGEEARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            +          AT Y +LEPCS     P  C Q I+E  I RVV+   +P + V   G+
Sbjct: 280 AKLDPHDPRLADATMYSSLEPCSDRASHPKSCTQLILETAIPRVVMAWREPSLFVEAEGV 339

Query: 117 QWLSQKG 123
           + L   G
Sbjct: 340 ERLMAAG 346


>gi|255080300|ref|XP_002503730.1| predicted protein [Micromonas sp. RCC299]
 gi|226518997|gb|ACO64988.1| predicted protein [Micromonas sp. RCC299]
          Length = 215

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 63/145 (43%), Positives = 84/145 (57%), Gaps = 3/145 (2%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTAYGGCPHAEVQALE 61
           +  DA  M  AL  +    G T  NP V C+IV  + G+V+G G     G PHAEV AL 
Sbjct: 69  TEADAERMRRALALAATAAGKTFPNPVVGCVIVDERSGVVVGEGYHPKAGEPHAEVFALR 128

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG  A+G TAYVTLEPC H+GR+PPC++ +++ G+ RVVV   DPD RVSG G++ L  
Sbjct: 129 AAGANAKGCTAYVTLEPCDHFGRTPPCSRALVDAGVTRVVVGFVDPDPRVSGGGIRTLLD 188

Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQ 145
            GI +     E E +     ++ R 
Sbjct: 189 AGIEVCVGCCEEECREINADFIARN 213


>gi|115388877|ref|XP_001211944.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114196028|gb|EAU37728.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 624

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 97/202 (48%), Gaps = 24/202 (11%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           +  H+TL  A S D+ I +       ++G  +K   H LR++ DAIL+G+GTVLAD+P L
Sbjct: 393 QFPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAILIGVGTVLADNPGL 452

Query: 208 TCRLNGLQE-------HSPMRIILDPHFKLS--LDSKIIKTA----LLAPVIIVTEND-- 252
            CRL G            P  +++DP  +     + ++++TA      AP ++V+     
Sbjct: 453 NCRLEGAGGFGGLGRMWQPRPVVIDPTGRWPVHPECRMLRTAVEGKGKAPWVVVSPGAQI 512

Query: 253 DPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN-- 304
           DP   +  +    + +     +       + +L  L   G+ S+++EGG  V    +N  
Sbjct: 513 DPQKLMMLKGYGGDFLRIVEYNQNWRLRWEGILRALASEGIKSVMIEGGGTVLSELLNPE 572

Query: 305 -SRLVDSIILYRSQIVIGEGGI 325
            +  +D+II+  +   +G GG+
Sbjct: 573 YTEFIDTIIVTVAPTYLGSGGV 594


>gi|224009578|ref|XP_002293747.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970419|gb|EED88756.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 256

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/160 (37%), Positives = 82/160 (51%), Gaps = 11/160 (6%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEV 57
            +++ D + M  A+R +R   G T  NP+V C++V  G     +IG G     G PHAEV
Sbjct: 96  SLTTSDVQHMKLAVRLARIGYGNTFPNPAVGCVLVSHGDDSSSIIGSGFHPKAGMPHAEV 155

Query: 58  QALEEAGEEARGA----TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            AL EA      A    TAYVTLEPC H G++PPCA  ++  GI RVVV   DP+ RV G
Sbjct: 156 FALLEACGHDHFADSNVTAYVTLEPCCHEGQTPPCALSLVVAGINRVVVGFRDPNPRVDG 215

Query: 114 RGLQWLSQKGI---IVDRMMESEGKIFLHAYLTRQVEKRS 150
            G+Q L   GI   +++     E    +  ++ R      
Sbjct: 216 GGIQLLKDAGIDVHVMEVESAQECTKLVEYFVKRISPDSP 255


>gi|330467994|ref|YP_004405737.1| deaminase-reductase domain-containing protein [Verrucosispora maris
           AB-18-032]
 gi|328810965|gb|AEB45137.1| deaminase-reductase domain-containing protein [Verrucosispora maris
           AB-18-032]
          Length = 235

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 88/225 (39%), Gaps = 12/225 (5%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           +R ++ L  A S D  I  A    + ++     ++V  +RA  DAILVG GTV  DDP L
Sbjct: 8   RRPYVLLSCATSIDGYIDDATDERLMLSNDADLDRVDEVRASCDAILVGAGTVRRDDPRL 67

Query: 208 TCRLNGLQ--------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
             R +  +          SP+R+ +     L   ++         ++             
Sbjct: 68  LVRCDRRRADRIARGLPESPIRVTVTGCGDLDPTARFFTVGDTERIVYCASAACEKTRHR 127

Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
             ++   +   D  DL + LT L  RGV  LLVEGGA V   F+ + L D + L  +   
Sbjct: 128 VGERATVVDAGDPIDLARALTDLADRGVRRLLVEGGALVHGQFLTAGLADELHLVVAPFF 187

Query: 320 IGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYIGKNLC 360
           +G+   P  + +G       +    V     G  V   Y     C
Sbjct: 188 VGDRRAPRFVGDGRFPWHSARRAQVVEARQIGDVVLTRYALSERC 232


>gi|292492106|ref|YP_003527545.1| bifunctional deaminase-reductase domain protein [Nitrosococcus
           halophilus Nc4]
 gi|291580701|gb|ADE15158.1| bifunctional deaminase-reductase domain protein [Nitrosococcus
           halophilus Nc4]
          Length = 364

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 97/235 (41%), Gaps = 17/235 (7%)

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
            L  +          ++  +A + D  I  A   S  I+    +   H LRA  DA+LVG
Sbjct: 130 CLTGHHIASQNHSPWVSGHLAQTLDGKIAAASGHSQWISNHADRKHAHRLRALHDAVLVG 189

Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK--TALLAPVIIVTENDDP 254
             T+  D+P LT R   +Q  +P R++LD H  L    K+ +         ++ + + D 
Sbjct: 190 RSTIEKDNPRLTVR--EVQGENPDRVVLDRHCHLLAGEKLYRIFHEPGNNWLLHSGSLDK 247

Query: 255 VLALAFRKKNINIIYCDCR---------DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           V       + +  +    +         DLK +L  +   G+ S+ VEGG      F+ +
Sbjct: 248 VTERYPIPEKVTPLPIRNQEGKNDSKIMDLKAVLEAIWSIGIRSVFVEGGGKTLSLFLAA 307

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLE---EGYLEKNFMCVRRDYFGSDVCLEYIGK 357
              D + L+ + +++G  G+PS      +   E  +  +   Y   ++ LE + +
Sbjct: 308 GRTDLLHLHIAPLLLGS-GLPSFQLSPVDRIQEGTYFHMTHFYLDKEILLECVPR 361


>gi|322706817|gb|EFY98397.1| riboflavin biosynthesis protein Rib7 [Metarhizium anisopliae ARSEF
           23]
          Length = 546

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 105/233 (45%), Gaps = 29/233 (12%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
            R  +TL  A S D+ + +A      ++G  SK   H LR++  AILVG+ TVLAD+P L
Sbjct: 308 NRPFVTLTFATSLDSSLSLAPGVRTHLSGPGSKAMTHYLRSRHAAILVGVSTVLADNPGL 367

Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDS--KIIK----TALLAPVIIVT------ENDDPV 255
           +CR+ G     P  II+DPH + +  S  ++ +     A LAP I+          +   
Sbjct: 368 SCRIEG-SASQPRPIIIDPHLRWTPRSSDQVFQICRSGAGLAPFILTGLLEAQIPRESVE 426

Query: 256 LALAFRKKNINIIYCDC------RDLKKLLTILVGRGVTSLLVEGGAAVAHSFI---NSR 306
           L      K I I            +   +   L+  G+TS++VEGG  + +S +   N  
Sbjct: 427 LLQQHGGKYIRIAPATSSKDRVRFEWNDVFQTLLSEGLTSVMVEGGGQIINSLLSPTNHN 486

Query: 307 LVDSIILYRSQIVIGEGG-IPSP------LEEGYLEKNFMCVRRDYFGSDVCL 352
           L+DS+I+  +   +G+GG + SP                  V    FG DV L
Sbjct: 487 LIDSVIVTIAPTWLGKGGVVVSPDRVCDAEGTPQAAARLSNVSWHPFGEDVVL 539


>gi|149909528|ref|ZP_01898182.1| putative riboflavin deaminase [Moritella sp. PE36]
 gi|149807433|gb|EDM67384.1| putative riboflavin deaminase [Moritella sp. PE36]
          Length = 144

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/126 (43%), Positives = 69/126 (54%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D +FM  AL  S+  +     NP V C++VKD I++  G T   G  HAE QA+   G  
Sbjct: 6   DEKFMLRALELSKLALPNCRPNPPVGCVLVKDNIIVSEGYTQAPGQHHAEAQAIANYGAA 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
               TAYVTLEPCS  GR+P CA  +    I+RVVV   DPD R SG+GL  L   GI V
Sbjct: 66  LNDITAYVTLEPCSFVGRTPSCAHTLAGLNIKRVVVATVDPDPRNSGKGLSVLRNAGIDV 125

Query: 127 DRMMES 132
           +  +  
Sbjct: 126 EVGVCQ 131


>gi|307328879|ref|ZP_07608049.1| riboflavin biosynthesis protein RibD [Streptomyces violaceusniger
           Tu 4113]
 gi|306885544|gb|EFN16560.1| riboflavin biosynthesis protein RibD [Streptomyces violaceusniger
           Tu 4113]
          Length = 297

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 83/316 (26%), Positives = 119/316 (37%), Gaps = 76/316 (24%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEE 62
           +S +   M  A+  S   +G TS NP V C+I+ +DG+ +G G     G  HAEV AL  
Sbjct: 3   TSNELTAMRRAIAISAQGLGTTSPNPPVGCVILDRDGVPVGEGYHLRKGDHHAEVNALTA 62

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AGE A G TA VTLEPC+H+GR+PPC Q +I+  + RV++ V DP  R    G   L Q 
Sbjct: 63  AGERAEGGTAVVTLEPCNHHGRTPPCRQALIDAKVSRVLMAVMDPTSR-GEGGAAVLEQA 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++E E  + L  +L      R HIT    V  D         +          
Sbjct: 122 GIEVERGVLEQEALLVLGPWLHSLRTGRPHITWAYTVGADGFDEDGAGIA---------- 171

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
               LR   D ++               R   ++E +P                      
Sbjct: 172 ---ELRRTHDLVI--------------RRTGAIEEGAP---------------------- 192

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL----LTILVGRGVTSLLVEGGAA 297
                                    +       L  +    L  L   G  S+L+EG A 
Sbjct: 193 -------------------GGHGTEVFRTPSGPLGDVPGKALGTLADAGARSVLIEGSAN 233

Query: 298 VAHSFINSRLVDSIIL 313
                + +  VD +I+
Sbjct: 234 EVAQLL-ADAVDRLII 248


>gi|170740596|ref|YP_001769251.1| deaminase-reductase domain-containing protein [Methylobacterium sp.
           4-46]
 gi|168194870|gb|ACA16817.1| bifunctional deaminase-reductase domain protein [Methylobacterium
           sp. 4-46]
          Length = 243

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 6/175 (3%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
           +  +  ++  S D  I      S  I    + + +H LRA  DAI+VGIGTVLADDP LT
Sbjct: 33  QPFVIAQLGQSLDGRIATLSGDSKYINRGAALDHLHRLRAHVDAIVVGIGTVLADDPLLT 92

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
            R   +  HSP R+I+DP  ++   ++ ++      +++      P   +    + + + 
Sbjct: 93  VRR--VPGHSPARVIIDPAGRIPPGAQCLREDGARRILVCG----PQARVPPGVEVLRME 146

Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
                  + ++  L   G   +L+EGGA    +FI++  +D + +  + +++G G
Sbjct: 147 EPSPFPPRAVIAALGRLGFARILIEGGARTISAFIDAGAIDRLHVMVAPLLLGSG 201


>gi|222478886|ref|YP_002565123.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Halorubrum lacusprofundi ATCC 49239]
 gi|222451788|gb|ACM56053.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Halorubrum lacusprofundi ATCC 49239]
          Length = 236

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 99/230 (43%), Gaps = 26/230 (11%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            H+ +  A S D  +       + I+G    ++V  +RA +DA+LVG+GTVLADDP LT 
Sbjct: 1   MHVVVNAAQSVDGKLATRRREQLRISGPEDFDRVDRVRAAADAVLVGVGTVLADDPHLTL 60

Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
                   RL   +  +P R+++D   +   D++I+  A     ++V+ +  P    A  
Sbjct: 61  DEEDRRVERLRNGRPGNPARVVVDSTGRTPTDARILDDA-ATTYLLVSASAPPERREALA 119

Query: 262 KKNINIIYC--------------DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
                ++                D  DL   +  L  RG+  L+VEGG  V +S   + L
Sbjct: 120 AAGAEVVVVEGGSGTERESESDGDHVDLVAGIHALAERGIDRLMVEGGGEVIYSCFAAGL 179

Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNF---MCVRRDYFGSDVCLEY 354
           VD + +Y   +VIG    P+  +     + F     V  +     + L Y
Sbjct: 180 VDELHVYVGSMVIGGRDAPTLADGEGFTEAFPRLDLVDTERLDDGIVLSY 229


>gi|111221324|ref|YP_712118.1| putative riboflavin/cytosine deaminase [Frankia alni ACN14a]
 gi|111148856|emb|CAJ60534.1| Putative riboflavin/cytosine deaminase (partial) [Frankia alni
           ACN14a]
          Length = 245

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 15/229 (6%)

Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203
           R    R ++    A+S D  I       + ++G     +V  +RA  DAILVG  TV  D
Sbjct: 14  RPPALRPYVICSCAMSLDGRIDDCSQARLILSGPADLERVDEVRAGCDAILVGAETVRRD 73

Query: 204 DPELTCRLNGLQE--------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
           DP L  R    +          +P++++L     L   S++  T  +  ++         
Sbjct: 74  DPRLAVRAEHRRAARVAAGLPPTPVKVVLSGGGDLDPRSRVFGTDPVDTLVYRRAGSAAP 133

Query: 256 LALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
                    ++++    R   D+  +L  L  RGV  LLVEGG +V  +F+ + LVD + 
Sbjct: 134 PPSWSAAPRVSVVDLPGRPWVDVAAVLADLDRRGVRRLLVEGGTSVHTAFLTAGLVDELH 193

Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEYIGK 357
           L  +   +GE   P+ +  G   ++                V L Y+  
Sbjct: 194 LAVAPFFVGERDAPAFVGPGAFPQDVRSPLRLAEVRQLDDVVLLRYLAP 242


>gi|322371685|ref|ZP_08046228.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haladaptatus
           paucihalophilus DX253]
 gi|320548570|gb|EFW90241.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haladaptatus
           paucihalophilus DX253]
          Length = 210

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 14/214 (6%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            H+ +  A+S D  +       V I+G    ++V  LR +SDAI+VG+GTVLADDP LT 
Sbjct: 1   MHVVVNAAMSADGKLSSRQREQVAISGADDFDRVDDLRVESDAIVVGVGTVLADDPSLTA 60

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP---VLALAFRKKNIN 266
                +  +P+R++ D   +  LD++++     A  ++      P   V AL     ++ 
Sbjct: 61  ----DEGVNPVRVVADSKARTPLDARVLDD--RADTLVFVAESAPNRNVRALREAGADVV 114

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           +       L +  + L  RG   ++VEGG  +  S  +  LVD + LY   +VIG    P
Sbjct: 115 VAGNGRVALGQAFSELESRGTKRVMVEGGGELIFSLFDGGLVDELRLYVGSVVIGGRDAP 174

Query: 327 SPLE-EGYLEKN----FMCVRRDYFGSDVCLEYI 355
           +  + +G++E+           +     V L Y+
Sbjct: 175 TLADGDGFVERRSFPDLDLDSVERVDDGVLLRYL 208


>gi|16125138|ref|NP_419702.1| riboflavin biosynthesis protein RibD [Caulobacter crescentus CB15]
 gi|221233866|ref|YP_002516302.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Caulobacter crescentus NA1000]
 gi|13422148|gb|AAK22870.1| riboflavin biosynthesis protein RibD [Caulobacter crescentus CB15]
 gi|220963038|gb|ACL94394.1| diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Caulobacter crescentus NA1000]
          Length = 331

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 83/302 (27%), Positives = 121/302 (40%), Gaps = 40/302 (13%)

Query: 27  TNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
            NP V C+++   G  +        G  HAE  AL    E G  AR  T  VTLEPC+H+
Sbjct: 32  PNPPVGCVVLDAAGETLAVAAHQRAGQAHAEAAALAACRERGAAARIDTLLVTLEPCNHH 91

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF----- 137
           GR+PPC + I+    R V + V DP++ V+G G   L   G+ V  + +           
Sbjct: 92  GRTPPCVEAILASPARTVWIAVRDPNLAVAGGGAARLEAAGLEVRFLSDLAHPEASDLVR 151

Query: 138 -----LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
                +  +     E R  +T+K A+++   +      S   T   S    H LR ++DA
Sbjct: 152 RARRLIAPFALWAREGRPWLTIKQAINRQGDMIPPPGAST-FTSETSLTLAHDLRRRADA 210

Query: 193 ILVGIGTVLADDPELTCRLNGLQEHSPMRI-ILDPHFKLSLDSKIIKTALLAPVIIVTEN 251
           I+ G GTVLAD P  T R          R+ ILD   +   D                  
Sbjct: 211 IITGSGTVLADAPAFTVRRTPDPRPFARRLAILDRRRRTPGDY----------------- 253

Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311
                  A   +   +   D   L  L++ L   GV   LVE G  +  S + + L D  
Sbjct: 254 -----IAAAEGRGFRVSLHDA--LPSLVSELAADGVLEALVECGPTLLASVLETGLWDEH 306

Query: 312 IL 313
           ++
Sbjct: 307 VV 308


>gi|224438172|ref|ZP_03659107.1| riboflavin biosynthesis protein RibD [Helicobacter cinaedi CCUG
           18818]
 gi|313144617|ref|ZP_07806810.1| riboflavin biosynthesis protein RibD [Helicobacter cinaedi CCUG
           18818]
 gi|313129648|gb|EFR47265.1| riboflavin biosynthesis protein RibD [Helicobacter cinaedi CCUG
           18818]
          Length = 330

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/262 (22%), Positives = 105/262 (40%), Gaps = 41/262 (15%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
           ++S D   +      +     L   NPSV  +I + +G ++ RGV +  G PHAEV A++
Sbjct: 1   MNSSDDLLIKHCCDIAWEAQTLALPNPSVGAIITRENGEILSRGVHSLAGSPHAEVIAIK 60

Query: 62  EAGEEA---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIE 94
           +A                               +  + YV+LEPC+HYG++PPCA  I E
Sbjct: 61  QAYFTLTQDSKILNLESSLELHNFLLHNHNGIFKNHSLYVSLEPCNHYGKTPPCANLIKE 120

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV--DRMMESEGKIFLHAYLTRQVEKRSHI 152
            G  +VV+   D    ++  G+Q L + GI     ++     K+ L   + R+  +    
Sbjct: 121 LGFAKVVIGTKDSHS-LASGGMQTLQEAGIHTSLSQIQNEAQKLLLPFEILREKGRFVLF 179

Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL- 211
            + + +    + G        I+   S+   H  R+  D + +   T+ +D+P L  R  
Sbjct: 180 KIAMRLDGSYVNG-------QISAESSRIFTHNQRSVCDYLCISGATLRSDNPTLNARYA 232

Query: 212 --NGLQEHSPMRIILDPHFKLS 231
                +   P   +   H    
Sbjct: 233 LPPYDKHKQPKLCLFSKHENNP 254


>gi|58531995|emb|CAE04095.3| OSJNBa0096F01.4 [Oryza sativa Japonica Group]
          Length = 633

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/237 (28%), Positives = 116/237 (48%), Gaps = 18/237 (7%)

Query: 57  VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           V AL +A + A  ATAYV+LEPC+HYGR+PPC + +I   ++ VVV + DP+  V+ +G+
Sbjct: 47  VFALRDARDLAENATAYVSLEPCNHYGRTPPCTEALINAKLKDVVVGMTDPNPIVASKGI 106

Query: 117 QWLSQKGIIVDRMMESE--GKIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVP 173
           + L   GI V   ME E   +    AY+   +  ++  TL+  +S +  ++   G G+  
Sbjct: 107 ERLQSAGIDVRVCMEEEALCRNLNEAYIHCMLTGKAFATLRTTLSVNGVVVNQIGTGADQ 166

Query: 174 ITGFISKNQVHLLRAQSDAILV-GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
             G+ S      L  + D +++ GI   +   P  T    G     P+ II+       L
Sbjct: 167 PGGYYS-----QLLKEYDGVIISGISVNMTTLP--TSHEAGA--KQPLYIIIAQGGNSQL 217

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
           + + ++    +  +++T  D PV     +   + ++  D   L+ +L IL  RG+  
Sbjct: 218 NIQFLREECASEAVVLT--DSPVTV---KPPGVEVLVLDRMSLEFILEILAQRGLCR 269


>gi|302507506|ref|XP_003015714.1| riboflavin biosynthesis protein Rib7, putative [Arthroderma
           benhamiae CBS 112371]
 gi|291179282|gb|EFE35069.1| riboflavin biosynthesis protein Rib7, putative [Arthroderma
           benhamiae CBS 112371]
          Length = 645

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 62/251 (24%), Positives = 105/251 (41%), Gaps = 31/251 (12%)

Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
           E     +        K  H+TL  A S D  I         ++G  +K   H LR++ DA
Sbjct: 366 EDHNHGNDNSNSGETKFPHVTLTYAQSMDGKISTKPGVQTLLSGPETKAMTHYLRSRHDA 425

Query: 193 ILVGIGTVLADDPELTCRLNGLQE-------HSPMRIILDPHFKL--SLDSKIIKTALL- 242
           I++G+GT LADDP L CRL G            P  +I+DP  +   S +S+++KTA   
Sbjct: 426 IIIGLGTALADDPGLNCRLEGAGGFGGFGTMWQPRPVIIDPTGRWSASAESRLLKTAAEG 485

Query: 243 ---APVIIVTENDD--PVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLL 291
              AP +IV+   +  P   +  ++   + +     +       + +   L  +G+ S++
Sbjct: 486 KGKAPWVIVSPGAELLPDKLMLLKRHGGDYLRIREYNPHWRLRWEAIFGALANQGIRSVM 545

Query: 292 VEGGAAVAHSFINS---RLVDSIILYRSQIVIGEGGIPSP-------LEEGYLEKNFMCV 341
           +EGG  V    +N      VDS+I+  +   +G  G+ +        L           +
Sbjct: 546 IEGGGVVLSELLNPEYVDFVDSVIVTVAPTYVGRNGVSASPDSKQDELGNPINALTPHNI 605

Query: 342 RRDYFGSDVCL 352
           +    G DV +
Sbjct: 606 KWQPLGKDVIM 616


>gi|327292501|ref|XP_003230949.1| riboflavin-specific deaminase [Trichophyton rubrum CBS 118892]
 gi|326466886|gb|EGD92339.1| riboflavin-specific deaminase [Trichophyton rubrum CBS 118892]
          Length = 645

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 64/251 (25%), Positives = 107/251 (42%), Gaps = 31/251 (12%)

Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
           E   + +A       K  H+TL  A S D  I         ++G  SK   H LR++ DA
Sbjct: 366 EDHNYGNANPNSGETKFPHVTLTYAQSMDGKISSKPGVQTVLSGPESKAMTHYLRSRHDA 425

Query: 193 ILVGIGTVLADDPELTCRLNGLQE-------HSPMRIILDPHFKL--SLDSKIIKTALL- 242
           I++G+GT LADDP L CRL G            P  +I+DP  +   S +S+++KTA   
Sbjct: 426 IIIGLGTALADDPGLNCRLEGAGGFGGFGTMWQPRPVIIDPTGRWSASAESRLLKTAAEG 485

Query: 243 ---APVIIVTENDD--PVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLL 291
              AP +IV+   +  P   +  ++   + +     +       + +   L  +G+ S++
Sbjct: 486 KGKAPWVIVSPGAELLPDKLMLLKRHGGDYLRIREYNPHWRLRWEAIFGALANQGIRSVM 545

Query: 292 VEGGAAVAHSFINS---RLVDSIILYRSQIVIGEGGIPSP-------LEEGYLEKNFMCV 341
           +EGG  V    +N      VDS+I+  +   +G  G+ +        L           +
Sbjct: 546 IEGGGVVLSELLNPEYVDFVDSVIVTVAPTYVGRNGVSASPDSKQDELGNPINALTPHNI 605

Query: 342 RRDYFGSDVCL 352
           +    G DV +
Sbjct: 606 KWQPLGKDVIM 616


>gi|153833299|ref|ZP_01985966.1| riboflavin biosynthesis protein RibD [Vibrio harveyi HY01]
 gi|148870435|gb|EDL69356.1| riboflavin biosynthesis protein RibD [Vibrio harveyi HY01]
          Length = 159

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/126 (43%), Positives = 78/126 (61%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            +FM  AL  SR  +     NP V C++VKDG ++  G T   G  HAEV+AL+    + 
Sbjct: 21  QQFMLRALEVSRNALPACQPNPPVGCVLVKDGEIVSEGHTQAIGGNHAEVEALKAYNGDL 80

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
              TAYVTLEPCS  GR+P CA+ ++ CGI++VVV + DPD+R +GRG+  L + G+ V+
Sbjct: 81  SDVTAYVTLEPCSFVGRTPACAKTLVTCGIKKVVVAMLDPDLRNAGRGIDILKEGGVEVE 140

Query: 128 RMMESE 133
             +  E
Sbjct: 141 IGLCGE 146


>gi|91792826|ref|YP_562477.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella
           denitrificans OS217]
 gi|91714828|gb|ABE54754.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella
           denitrificans OS217]
          Length = 142

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/135 (40%), Positives = 77/135 (57%), Gaps = 1/135 (0%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M  AL  S+  +     NP V C++VKDG V+G+G T   G  HAEV+AL     + 
Sbjct: 3   EEYMLIALELSKKALPHCLPNPPVGCVLVKDGQVVGQGFTQVIGGNHAEVEALNSYTGDL 62

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
            G TAYVTLEPCS  GR+P CA  +   G++ +V+ + DPD R +G+GL  L   GI + 
Sbjct: 63  AGVTAYVTLEPCSFVGRTPACAARLAHSGLKHLVLAMLDPDSRNNGKGLAMLQHAGINVE 122

Query: 127 DRMMESEGKIFLHAY 141
             + E++   FL  Y
Sbjct: 123 LGICEAQASAFLSPY 137


>gi|147918769|ref|YP_687507.1| riboflavin specific deaminase [uncultured methanogenic archaeon
           RC-I]
 gi|110622903|emb|CAJ38181.1| predicted riboflavin specific deaminase [uncultured methanogenic
           archaeon RC-I]
          Length = 225

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 14/219 (6%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTVLA 202
            KR ++ +   ++ D  + +    S  I        S   +H  R++ DAI+VG  T+  
Sbjct: 1   MKRPYVEVISEMTVDGKLTLKRGLSSKIIMGLMDEHSHYFLHKKRSEFDAIMVGSNTIKI 60

Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
           D+  LT RL      SP+R+I      + L + ++       +I V+E  D     A R 
Sbjct: 61  DNSILTNRL--ATGASPIRVIPCSDGSIPLTANVLNKD-APTLICVSEKADACRVEAIRN 117

Query: 263 KNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
               ++ C  D  D+  L+  L  RG+  L+VEGG  +    I+ +++D I L +   +I
Sbjct: 118 TGAEVVICGRDRIDIDLLMDTLYNRGIRRLMVEGGPTLIWQLISRKMIDHITLIQIPYII 177

Query: 321 GEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEY 354
           G    PS +    ++     V+ +       G+ +  EY
Sbjct: 178 GGDSTPSLVGGPGVDSIDKVVQVNLTDFYKVGNHLITEY 216


>gi|145607321|ref|XP_361694.2| hypothetical protein MGG_12162 [Magnaporthe oryzae 70-15]
 gi|145014902|gb|EDJ99470.1| hypothetical protein MGG_12162 [Magnaporthe oryzae 70-15]
          Length = 289

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 100/232 (43%), Gaps = 30/232 (12%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             +TL  A S D+ + +A      ++G  SK   H LR++ DAIL+G GT +ADDP L C
Sbjct: 53  PFVTLTFATSLDSALSLAPGVRTTLSGPQSKAMTHFLRSRHDAILIGAGTAVADDPGLNC 112

Query: 210 RLNGLQEHSPMRIILDPHFKLSLD--SKIIKTALL----APVIIVTEND----DPVLALA 259
           R+    E  P  I++DP  + S    SK+++ A      AP +I T       D      
Sbjct: 113 RIQDA-ESQPRPIVVDPRCRWSFHERSKVLQLAGEGRGLAPFVITTPEAAAAIDEQKRAL 171

Query: 260 FRKKNINIIYC--------DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI----NSRL 307
                   I             D   +L  L   G+ S++VEGG  V ++ +     + L
Sbjct: 172 LESHGGKYISLKYGGSSDDGVLDWNDILAALQHEGLNSVMVEGGGHVINTLLGHKDKNDL 231

Query: 308 VDSIILYRSQIVIGEGG-IPSPLEEGYLEKN------FMCVRRDYFGSDVCL 352
           VDS+I+  +   +G+GG + SP  E     N         +     G DV L
Sbjct: 232 VDSVIITIAPTWLGQGGVVVSPAREVDESGNPKAALRLTNLSWHPLGDDVVL 283


>gi|302666117|ref|XP_003024661.1| riboflavin biosynthesis protein Rib7, putative [Trichophyton
           verrucosum HKI 0517]
 gi|291188727|gb|EFE44050.1| riboflavin biosynthesis protein Rib7, putative [Trichophyton
           verrucosum HKI 0517]
          Length = 645

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 62/251 (24%), Positives = 105/251 (41%), Gaps = 31/251 (12%)

Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
           E     +        K  H+TL  A S D  I         ++G  +K   H LR++ DA
Sbjct: 366 EDHNHGNDNSHSGETKFPHVTLTYAQSMDGKISTKPGVQTLLSGPDTKAMTHYLRSRHDA 425

Query: 193 ILVGIGTVLADDPELTCRLNGLQE-------HSPMRIILDPHFKL--SLDSKIIKTALL- 242
           I++G+GT LADDP L CRL G            P  +I+DP  +   S +S+++KTA   
Sbjct: 426 IIIGLGTALADDPGLNCRLEGAGGFGGFGTMWQPRPVIIDPTGRWSASAESRLLKTAAEG 485

Query: 243 ---APVIIVTENDD--PVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLL 291
              AP +IV+   +  P   +  ++   + +     +       + +   L  +G+ S++
Sbjct: 486 KGKAPWVIVSPGAELLPDKLMLLKRHGGDYLRIREYNPHWRLRWEAIFGALANQGIRSVM 545

Query: 292 VEGGAAVAHSFINS---RLVDSIILYRSQIVIGEGGIPSP-------LEEGYLEKNFMCV 341
           +EGG  V    +N      VDS+I+  +   +G  G+ +        L           +
Sbjct: 546 IEGGGVVLSELLNPEYVDFVDSVIVTVAPTYVGRNGVSASPDSKQDELGNPINALTPHNI 605

Query: 342 RRDYFGSDVCL 352
           +    G DV +
Sbjct: 606 KWQPLGKDVIM 616


>gi|119384080|ref|YP_915136.1| riboflavin biosynthesis protein RibD [Paracoccus denitrificans
           PD1222]
 gi|119373847|gb|ABL69440.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Paracoccus
           denitrificans PD1222]
          Length = 219

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 65/144 (45%), Positives = 77/144 (53%), Gaps = 1/144 (0%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL  +R   G    NP V C+IVKDG +I  G T  GG PHAE  AL  AG  ARGA
Sbjct: 1   MGRALALARRMRGHVWPNPPVGCVIVKDGTIIAEGETQPGGRPHAERLALNRAGAAARGA 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           T YVTLEPC H+GR+PPCA  II  G+ RVV  + DPD RV G G   L   GI V    
Sbjct: 61  TLYVTLEPCCHWGRTPPCADAIIAAGVTRVVAAMQDPDPRVDGGGFARLRAAGIEVTVGE 120

Query: 131 ES-EGKIFLHAYLTRQVEKRSHIT 153
            + +    +  +L R       + 
Sbjct: 121 GATDAAAIMSGFLHRTRTGEPELI 144


>gi|77164589|ref|YP_343114.1| bifunctional deaminase-reductase-like [Nitrosococcus oceani ATCC
           19707]
 gi|254433288|ref|ZP_05046796.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Nitrosococcus oceani AFC27]
 gi|76882903|gb|ABA57584.1| bifunctional deaminase-reductase-like protein [Nitrosococcus oceani
           ATCC 19707]
 gi|207089621|gb|EDZ66892.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Nitrosococcus oceani AFC27]
          Length = 364

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 56/236 (23%), Positives = 96/236 (40%), Gaps = 19/236 (8%)

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
            L  +     ++   I+  +A + D  I  A   S  I+ +  +   H LRA  DA+LVG
Sbjct: 130 CLAGHHIASQKRLPWISAHLAQTLDGKIAAASGHSQWISNYADRKHAHRLRALHDAVLVG 189

Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL------------SLDSKIIKTALLAP 244
            GTV  D+P LT R   +   +P R+ILD    L               + ++ +  L  
Sbjct: 190 RGTVEKDNPRLTVR--EVPGENPKRVILDRQCHLLTGEKPYRIFQEPGHNWLLHSDSLNK 247

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           +       + V+ L  R +          DLK +L  +   G+ S+ VEGG      F+ 
Sbjct: 248 IETHHAIPEKVIPLGVRNQAGE-KNGKLMDLKAVLETIWSLGIRSVFVEGGGKTLSFFLA 306

Query: 305 SRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
               D + L+ + +++G  G+PS   P      E  +  +       ++ LE + +
Sbjct: 307 GGQTDLLHLHIAPLLLGS-GLPSFQLPPVARIQEGTYFHMTHFCLDKEILLECLPR 361


>gi|156977316|ref|YP_001448222.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
           harveyi ATCC BAA-1116]
 gi|156528910|gb|ABU73995.1| hypothetical protein VIBHAR_06102 [Vibrio harveyi ATCC BAA-1116]
          Length = 201

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 54/126 (42%), Positives = 76/126 (60%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            +FM  AL  S   +     NP V C++VKDG ++  G T   G  HAEV+AL+    + 
Sbjct: 63  QQFMLRALEVSLNALPACQPNPPVGCVLVKDGEIVSEGHTQAIGGNHAEVEALKAYKGDL 122

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
              TAYVTLEPCS  GR+P CA+ ++ CGI++VVV + DPD R +GRG+  L + G+ V+
Sbjct: 123 SDVTAYVTLEPCSFVGRTPACAKTLVTCGIKKVVVAMLDPDPRNAGRGIDILKEGGVEVE 182

Query: 128 RMMESE 133
             +  E
Sbjct: 183 IGLCGE 188


>gi|255935949|ref|XP_002559001.1| Pc13g05670 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583621|emb|CAP91636.1| Pc13g05670 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 607

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 57/236 (24%), Positives = 103/236 (43%), Gaps = 31/236 (13%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           +  H+TL  A S D+ I +       ++G  +K   H LR++ DAILVG+GTVLAD+P L
Sbjct: 362 EFPHVTLSYASSMDSKISLQPGMQTVLSGPEAKLMTHYLRSRHDAILVGVGTVLADNPGL 421

Query: 208 TCRLN-------GLQEHSPMRIILDPHFKLS--LDSKIIKTA----LLAPVIIVTEND-- 252
            CRL          +   P  +I+DP  +     + ++++TA      AP ++++     
Sbjct: 422 NCRLEGAGGFGGLGRMWQPRPVIIDPMGRWPVHPECRMLRTAVEGKGKAPWVVLSPGAQI 481

Query: 253 DPVLALAFRKKN------INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           +P   +  +         +          + +   L   G+ S+++EGG  V    +N  
Sbjct: 482 NPQTLVMLKGYGGDFLRIVEYNQHWRLRWEAVFRALASEGIKSVMIEGGGTVLSELLNPE 541

Query: 307 ---LVDSIILYRSQIVIGEGGIPSPLEEGYLEK-------NFMCVRRDYFGSDVCL 352
               +DSII+  +   +G GG+    +    ++       N   V+    G +V +
Sbjct: 542 YTSFIDSIIVTVAPTYLGRGGVNVSPDSKQDQEGTPNAALNPRDVKWMPLGQNVIM 597


>gi|296536225|ref|ZP_06898343.1| riboflavin biosynthesis protein RibD [Roseomonas cervicalis ATCC
           49957]
 gi|296263447|gb|EFH09954.1| riboflavin biosynthesis protein RibD [Roseomonas cervicalis ATCC
           49957]
          Length = 280

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 83/206 (40%), Gaps = 11/206 (5%)

Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214
           ++A + D  I  AG  S  I G       H LRA  DA+LVG GTV  DDP LT R    
Sbjct: 64  RLAQTLDGRIATAGGSSQWIGGPGDLLHTHRLRALCDAVLVGAGTVKHDDPRLTTR--DC 121

Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD--- 271
               P+RIILD    L  + ++        +++  E+         R     ++      
Sbjct: 122 PGPDPVRIILDTSRTLGTEYRVFAEGGPPTLLVCAEDAAERGLPRDRHGAAEVLRAPRAA 181

Query: 272 --CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
               D+  LL  L  RG+  + VEGG      F+ +  +D + +  + +++G  GIP+  
Sbjct: 182 IGGLDIATLLPKLAARGLRRIFVEGGGLTVSRFLAAGCLDRLHVTVAPVLLGS-GIPAFT 240

Query: 330 --EEGYLEKNFMCV-RRDYFGSDVCL 352
             E   +             G DV  
Sbjct: 241 LPEAARIADGLRFAWGVHRLGEDVLF 266


>gi|167914873|ref|ZP_02501964.1| riboflavin biosynthesis protein [Burkholderia pseudomallei 112]
          Length = 112

 Score =  146 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 52/106 (49%), Positives = 65/106 (61%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
            S  D   M+ ALR +   +  T  NP V C+I +    +G G     G PHAEV AL E
Sbjct: 4   FSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALRE 63

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           AGE ARGATAYVTLEPC+H+GR+PPCA  ++  G+ RVV+   DP 
Sbjct: 64  AGERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPF 109


>gi|24213844|ref|NP_711325.1| pyrimidine deaminase, riboflavin biosynthesis [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45658378|ref|YP_002464.1| hypothetical protein LIC12536 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24194684|gb|AAN48343.1| pyrimidine deaminase, riboflavin biosynthesis [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45601621|gb|AAS71101.1| RibD [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
          Length = 466

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 62/219 (28%), Positives = 111/219 (50%), Gaps = 8/219 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLI--VKDGIVIGRGVTAYGGCPHAEVQA- 59
           ++S   +F     + S   +G +S NP V+CLI  V++  +  +G T+  G PHAE  A 
Sbjct: 1   MTSLPEKFREELRKLSFLSMGESSPNPPVSCLITDVENKRIFAKGRTSPTGGPHAERNAY 60

Query: 60  --LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG-L 116
                 G  ++    +VT EPC+H+G++PPC   I+E   + +   + DP+  V     L
Sbjct: 61  YEFINNGLLSKPHNVWVTFEPCTHHGKTPPCLDLILEHKPKTLYYGLKDPNPLVRKNEGL 120

Query: 117 QWLSQKGI--IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           +     GI  + D  ++   +  L  +++R  +++  + +K AVS++         +V +
Sbjct: 121 EICRNAGIQVVSDFGLKEIAEESLFGFISRIEKQKPSMIIKSAVSKEGFFTTKDKATVRL 180

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213
           +G +S     +LRA+ DA+L+G  T+  D P L  R+ G
Sbjct: 181 SGNLSDRLTSILRAKCDAVLIGPRTLFQDLPGLDFRIGG 219


>gi|163794376|ref|ZP_02188348.1| bifunctional deaminase-reductase-like protein [alpha
           proteobacterium BAL199]
 gi|159180544|gb|EDP65065.1| bifunctional deaminase-reductase-like protein [alpha
           proteobacterium BAL199]
          Length = 261

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 10/206 (4%)

Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN 212
             ++  + D  I      S  + G  + + +H LRA  DA+++G GT + DDP LT R  
Sbjct: 62  IGQLGQTLDGRIATVSGHSHYVNGSEALDHLHRLRALVDAVVIGAGTAVDDDPSLTTRR- 120

Query: 213 GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC 272
            ++  +P+R++LDP  ++  D K+ +    AP ++      PV   A R           
Sbjct: 121 -VEGSNPVRVLLDPSGRVPADRKLFRDG-QAPTLVCG----PVRPGAERLDTSGDQETQ- 173

Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG--GIPSPLE 330
           R  + +L  L  RG   +LVEGGA  A SF+++R +D + L  +  ++G G  GI  P  
Sbjct: 174 RSPRDVLAALSARGFDIVLVEGGAKTASSFLDARCIDRLHLLVAPTLLGSGRPGIVLPEV 233

Query: 331 EGYLEKNFMCVRRDYFGSDVCLEYIG 356
                      RR   G D   +   
Sbjct: 234 MTMDGARRFDSRRYTLGDDTLFDLTP 259


>gi|223041133|ref|ZP_03611388.1| riboflavin biosynthesis protein RibD [Campylobacter rectus RM3267]
 gi|222877627|gb|EEF12753.1| riboflavin biosynthesis protein RibD [Campylobacter rectus RM3267]
          Length = 362

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 107/287 (37%), Gaps = 55/287 (19%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA------ 59
           D  +MS A++ +     LT  NP+V C+++   G ++        G  HAE  A      
Sbjct: 4   DEFYMSLAIKKAWEFQILTYPNPAVGCVVLDAGGRLLSVAAHKRAGFLHAEPSAVLLALC 63

Query: 60  ------------------------------------------LEEAGEEARGATAYVTLE 77
                                                     L+  G+  +GA AYVTLE
Sbjct: 64  KKSEAFLHDFLREYNAALGIKFESVAELTNADLEPNFTYEYILQNHGDLLKGAKAYVTLE 123

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKI 136
           PC+H G++PPCA+ +       VV+   D +  V+  G   L   G+ +   ++      
Sbjct: 124 PCAHRGKTPPCAELLRLLKFAEVVIARGDENA-VASGGAHILQSGGVAVKFDVLRQGADE 182

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
            +  +L  Q    S   L ++ +    + +    S  I+   S+   H LR+ ++ +++G
Sbjct: 183 LIEPFLAWQRGNFSFFKLALSANG---VAVGTAQSKIISNLASRTHSHRLRSAAELLVIG 239

Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
             TV AD P L  RL      +P  II     +      +      +
Sbjct: 240 GATVRADRPRLDTRLIE-DGKNPNVIIYSREREFDASIPLFGVEGRS 285


>gi|307329731|ref|ZP_07608887.1| bifunctional deaminase-reductase domain protein [Streptomyces
           violaceusniger Tu 4113]
 gi|306884571|gb|EFN15601.1| bifunctional deaminase-reductase domain protein [Streptomyces
           violaceusniger Tu 4113]
          Length = 348

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 100/225 (44%), Gaps = 6/225 (2%)

Query: 132 SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191
            E ++ +  YL   +        ++  S D  I      +  +TG   +  +H LRA +D
Sbjct: 43  PEARLLVDRYLPLCLAGPRLTIAQLGQSLDGFIATRTGDADFVTGEEDRRHLHRLRALAD 102

Query: 192 AILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251
           A++VG GT +ADDP+LT R        P+R++LDP  ++ LD ++        + +V   
Sbjct: 103 AVVVGAGTAVADDPQLTVRACAGTH--PVRVVLDPRGRVPLDRRVFTDGSAPTLWVVGAT 160

Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311
            +   A     + + +   D     +L+  L  RG+  +L+EGG      F+++  +  +
Sbjct: 161 GERRPAPPDGVELLTLTEPDAFAPHQLVRALRRRGLGRVLIEGGGVTVSRFLHAGALHRL 220

Query: 312 ILYRSQIVIGEGGIPSPLEEGYLEKNFM---CVRRDYFGSDVCLE 353
            +  + +++G+ GIP    +G           VRR   G D   E
Sbjct: 221 YVTVAPVLLGD-GIPGLRFDGTPVMRDALRPPVRRSTLGEDTLFE 264


>gi|307352940|ref|YP_003893991.1| bifunctional deaminase-reductase domain-containing protein
           [Methanoplanus petrolearius DSM 11571]
 gi|307156173|gb|ADN35553.1| bifunctional deaminase-reductase domain protein [Methanoplanus
           petrolearius DSM 11571]
          Length = 227

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 98/217 (45%), Gaps = 15/217 (6%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
            H+ +   ++ D  + +    S  I        +   +H  RA+ DAI+VG  T+  D+ 
Sbjct: 8   PHVLMMSEITVDGKLTLKKGASSKILMKYMDHATDILLHKTRAEYDAIMVGSNTINIDNS 67

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
            LT R   ++  SP+R+I      +  +S ++       +I V++   P        K  
Sbjct: 68  FLTVR--SVKGKSPLRVIPSSRAAIPPESNVL-GPDAPTLIAVSKKASPENIRILEDKGA 124

Query: 266 NIIYC--DCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
           +++    D  DL  L+  LV   GV+ L++EGG  + +  +  RLVD I L     ++G 
Sbjct: 125 DVVCVGEDKVDLPLLMKTLVENYGVSKLMIEGGPTLNYYMLQDRLVDEIRLIHLPFIVGG 184

Query: 323 GGIPSPLEEGYL---EKNFMCVRRDYF--GSDVCLEY 354
              PS +   ++   E+ F    ++Y+  G+++  EY
Sbjct: 185 SDTPSLVGGMHIESEEEMFSLQLKNYYMCGTNLVTEY 221


>gi|258577771|ref|XP_002543067.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237903333|gb|EEP77734.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 612

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 62/238 (26%), Positives = 105/238 (44%), Gaps = 31/238 (13%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
             K  H+TL  A S D  I +A      ++G  SK   H LR++ DAILVG+GT LAD+P
Sbjct: 349 NRKFPHVTLTYAQSMDGKISLAPGVQTALSGPESKLMTHYLRSRHDAILVGVGTALADNP 408

Query: 206 ELTCRLN-------GLQEHSPMRIILDPHFKLS--LDSKIIKTALL----APVIIVTEND 252
            L CRL          +   P  +I+DP  + +   + +++++AL      P I+V+   
Sbjct: 409 GLNCRLEGAGGYGGLGKMWQPRPVIVDPTGRWTFNPECRMLQSALAGKGKGPWIVVSPGA 468

Query: 253 D--PVLALAFRKKNINIIYCDCRDLKKLLT------ILVGRGVTSLLVEGGAAVAHSFIN 304
           +      L  +K   + +     +    L        L   G++S++VEGG  V    +N
Sbjct: 469 NIPADRILLLKKHGGDFLRIAEFNPAWRLRWSTIFGALAAEGISSVMVEGGGVVLSELLN 528

Query: 305 ---SRLVDSIILYRSQIVIGEGGIP-SP------LEEGYLEKNFMCVRRDYFGSDVCL 352
                 +DS+I+  +   +G GG+  +P        +  +      V+    G D+ +
Sbjct: 529 PEYEDFIDSVIVTVAPTYLGRGGVAVAPDSKRDDYGKPKIALKPKEVKWHPLGQDMIM 586


>gi|292655495|ref|YP_003535392.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Haloferax
           volcanii DS2]
 gi|291371668|gb|ADE03895.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Haloferax
           volcanii DS2]
          Length = 219

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 58/218 (26%), Positives = 90/218 (41%), Gaps = 14/218 (6%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT- 208
            H+ +  A S D  +       V I+G     +V  +RA +DA+ VG+GTVLADDP LT 
Sbjct: 1   MHVHVNAAASLDGKLSSRRREQVTISGDDDFARVDEIRATADAVAVGVGTVLADDPHLTL 60

Query: 209 -------CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
                   R +      P R++ D   +   D++I+  A     ++V+E        A  
Sbjct: 61  DDPGLVAAREDRGDSPHPARVVADSRARTPTDARILDDA-ATTYLLVSEAAPGGRREALE 119

Query: 262 KKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
                ++    +   L      L  RGV  L+VEGG  +  S   + LVD + LY   +V
Sbjct: 120 AAGAELVVAGAERVSLPDAFDALEARGVDRLMVEGGGELIFSLFEAGLVDELTLYVGSLV 179

Query: 320 IGEGGIPSPLEEGYLEKNFMCVR---RDYFGSDVCLEY 354
           IG    P+  +      +F  +     +     V L Y
Sbjct: 180 IGGRDAPTLADGDGFVSDFPRLSLRDVERVDDGVLLTY 217


>gi|326470312|gb|EGD94321.1| riboflavin-specific deaminase [Trichophyton tonsurans CBS 112818]
          Length = 648

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 31/236 (13%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           K  H+TL  A S D  I         ++G  +K   H LR++ DAI++G+GT LADDP L
Sbjct: 384 KFPHVTLTYAQSMDGKISTKPGVQTVLSGPETKAMTHYLRSRHDAIIIGLGTALADDPGL 443

Query: 208 TCRLNGLQE-------HSPMRIILDPHFKL--SLDSKIIKTALL----APVIIVTENDD- 253
            CRL G            P  +I+DP  +   S +S+++KTA      AP +IV+   + 
Sbjct: 444 NCRLEGAGGFGGFGTMWQPRPVIIDPTGRWSASAESRLLKTAAEGKGKAPWVIVSPGAEL 503

Query: 254 -PVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFINS- 305
            P   +  ++   + +     +       + +   L  +G+ S+++EGG  V    +N  
Sbjct: 504 LPDKLMLLKRHGGDYLRIREYNPHWRLRWEAIFGALANQGIRSIMIEGGGVVLSELLNPE 563

Query: 306 --RLVDSIILYRSQIVIGEGGIPSP-------LEEGYLEKNFMCVRRDYFGSDVCL 352
               VDS+I+  +   +G  G+ +        L           ++    G DV +
Sbjct: 564 YVDFVDSVIVTVAPTYVGRNGVSASPDSKQDELGNPINALTPHTIKWQPLGKDVIM 619


>gi|241203520|ref|YP_002974616.1| bifunctional deaminase-reductase domain protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240857410|gb|ACS55077.1| bifunctional deaminase-reductase domain protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 222

 Score =  145 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 4/169 (2%)

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           +   H  RA  DAI+VG GTVL+DDPELT R       +P+RI+     +L LD+K++  
Sbjct: 36  RAWFHGQRAAHDAIMVGAGTVLSDDPELTVR--HAPGPNPLRIVPSSMGRLPLDAKLLND 93

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297
                V++     +  +     K N+ ++ C  R  DL  L+ IL  RG+ S++VEGG+ 
Sbjct: 94  GHPTVVVVSRSAKEADIEALKSKPNVEVVRCGERRVDLPGLMNILDARGIKSMIVEGGSR 153

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
           + HS   +RLV  I++    ++ G    PS +      + F   +    
Sbjct: 154 LLHSLHEARLVHRIVIKHIPVITGSADAPSYMRPDEYSRPFELSKWRLV 202


>gi|326481151|gb|EGE05161.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Trichophyton
           equinum CBS 127.97]
          Length = 648

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 31/236 (13%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           K  H+TL  A S D  I         ++G  +K   H LR++ DAI++G+GT LADDP L
Sbjct: 384 KFPHVTLTYAQSMDGKISTKPGVQTVLSGPETKAMTHYLRSRHDAIIIGLGTALADDPGL 443

Query: 208 TCRLNGLQE-------HSPMRIILDPHFKL--SLDSKIIKTALL----APVIIVTENDD- 253
            CRL G            P  +I+DP  +   S +S+++KTA      AP +IV+   + 
Sbjct: 444 NCRLEGAGGFGGFGTMWQPRPVIIDPTGRWSASAESRLLKTAAEGKGKAPWVIVSPGAEL 503

Query: 254 -PVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFINS- 305
            P   +  ++   + +     +       + +   L  +G+ S+++EGG  V    +N  
Sbjct: 504 LPDKLMLLKRHGGDYLRIREYNPHWRLRWEAIFGALANQGIRSIMIEGGGVVLSELLNPE 563

Query: 306 --RLVDSIILYRSQIVIGEGGIPSP-------LEEGYLEKNFMCVRRDYFGSDVCL 352
               VDS+I+  +   +G  G+ +        L           ++    G DV +
Sbjct: 564 YVDFVDSVIVTVAPTYVGRNGVSASPDSKQDELGNPINALTPHTIKWQPLGKDVIM 619


>gi|291276854|ref|YP_003516626.1| putative priboflavin-specific deaminase [Helicobacter mustelae
           12198]
 gi|290964048|emb|CBG39888.1| putative priboflavin-specific deaminase [Helicobacter mustelae
           12198]
          Length = 345

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 78/377 (20%), Positives = 140/377 (37%), Gaps = 79/377 (20%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67
           MS  ++ +     LT  NP+VA ++V  +G ++        G PHAEV +L+EA  +   
Sbjct: 8   MSLCIKKAWEFQTLTLPNPAVAAMVVSGEGEILSLCAHQKSGAPHAEVLSLKEAYYKLTK 67

Query: 68  -------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                                    +  + YVTLEPC+ YG++PPCA+ +   GI+ V++
Sbjct: 68  DENIKNITNSQELHQILRNHHQNLFKDCSIYVTLEPCTCYGKTPPCAEILQSIGIKSVII 127

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
              +      G+ +        +  R++E E +  L  +L    +K+     K+A   D 
Sbjct: 128 GALESTKNQGGKEM-LEKSGARVTARILEKECQDLLLPFLCY-QKKQRFSLFKLATRLDG 185

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPM 220
                      I+   +K   H  R+  D I V   T+  D+P L  R         +P 
Sbjct: 186 DYKSGS-----ISCSEAKIFTHNQRSVCDKIFVSQNTLRNDNPLLDARFCQEPFVFGAPD 240

Query: 221 RIILDPHFK-LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279
             I   + K L  D++I                         K+ ++             
Sbjct: 241 VGIFSRNPKTLDADARIFS----------------------HKREVDFYSTKKSLP---- 274

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE--KN 337
                +G    ++EGG  +  +  +   +D ++++ S  +      P   E+G L+  ++
Sbjct: 275 -----KGFN--IIEGGWKLFLALRDQ--IDMLLVHISPTL--SAKNPPFSEQGLLQGMED 323

Query: 338 F--MCVRRDYFGSDVCL 352
           F    +     G D  L
Sbjct: 324 FSGELLHTQKLGEDALL 340


>gi|254420634|ref|ZP_05034358.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Brevundimonas sp. BAL3]
 gi|196186811|gb|EDX81787.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Brevundimonas sp. BAL3]
          Length = 209

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 62/156 (39%), Positives = 82/156 (52%), Gaps = 2/156 (1%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  +  D  FM+ A+  +   +G T  NP+V C+IVKDG +I +  TA GG PHAE QA+
Sbjct: 1   MSWTDADRAFMAQAIDLATARMGETWPNPAVGCVIVKDGRIIAQAATAPGGRPHAEEQAV 60

Query: 61  EEAGEEARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
             AG E  GAT YVTLEPC         CA F+ E G+ RVV+   DP    +GRG + L
Sbjct: 61  PAAGAEIEGATVYVTLEPCGARSSGRQSCAHFLTEAGVERVVIACLDPSPFAAGRGTERL 120

Query: 120 SQKG-IIVDRMMESEGKIFLHAYLTRQVEKRSHITL 154
             KG  +   +M  EG      +L R    R  + +
Sbjct: 121 RAKGLTVETGLMCDEGAALCEGFLHRLETGRPMVRI 156


>gi|260943049|ref|XP_002615823.1| hypothetical protein CLUG_04705 [Clavispora lusitaniae ATCC 42720]
 gi|238851113|gb|EEQ40577.1| hypothetical protein CLUG_04705 [Clavispora lusitaniae ATCC 42720]
          Length = 243

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/211 (32%), Positives = 98/211 (46%), Gaps = 16/211 (7%)

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
           FL  YL  Q   R  +TL  A S D+ I  A      I+   +K   H LRA  D+ILVG
Sbjct: 13  FLKEYLPSQRTDRPFVTLTWAQSLDSRIAAAPGLQTKISHAETKTMTHYLRANHDSILVG 72

Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK-----TALLAPVIIVTEN 251
           IGTVLADDP+L CR           +++DPH K       +         LAP I+V   
Sbjct: 73  IGTVLADDPKLNCRYGNSHIRP---VVVDPHGKWDYSKSTLHKVCAEGKGLAPFILVGAQ 129

Query: 252 DDP--VLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
             P          +    I  D       + +++L +L  + + S+++EGGA V +S + 
Sbjct: 130 VSPSSENKTNLSAQGGQFITIDFSLDRSLNWQRILHVLHQKDIASVMIEGGADVINSLLK 189

Query: 305 SRLVDSIILYRSQIVIGEGGIP-SPLEEGYL 334
           S LVDS+I+    + +G+ G+  SP     L
Sbjct: 190 SDLVDSVIVTVGPVFLGKDGVEVSPSGGAEL 220


>gi|311694828|gb|ADP97701.1| protein containing bacterial bifunctional deaminase-reductase,
           C-terminal domain [marine bacterium HP15]
          Length = 290

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 87/212 (41%), Gaps = 12/212 (5%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             +  ++  S D  I      S  I G      +H +RA SDA++VG GT   D+P LT 
Sbjct: 74  PKVIGQLGQSLDGRIATVTGRSRFINGDDGITHLHRIRAVSDAVVVGAGTATTDNPRLTV 133

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
           R       +P+R+++D H ++     +  T   AP + +                +  I 
Sbjct: 134 RRT--SGRNPVRVVIDRHHRVPDSHHLF-TDGEAPTLRLVAGTYEKAKNPSIGSGVTEIP 190

Query: 270 C-------DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
           C       D  D + +L +L   G+  + VEGG      F+N+ L+D + +  + ++IG 
Sbjct: 191 CLGDAESEDAVDPRVILEVLADLGLKKVFVEGGGVTVSCFLNAGLLDRLHVMVAPMIIGS 250

Query: 323 GGIPSPLEEGYLEKNFMCVRRDY--FGSDVCL 352
           G     L E     + +  R      GSD+  
Sbjct: 251 GRPAFSLPEIDFLDDALRPRAQLINLGSDMLF 282


>gi|288920814|ref|ZP_06415112.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Frankia sp.
           EUN1f]
 gi|288347773|gb|EFC82052.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Frankia sp.
           EUN1f]
          Length = 242

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 85/224 (37%), Gaps = 18/224 (8%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            H+ L  A+S D  I       + ++     ++V  +RA  DAILVG GTV  DDP L  
Sbjct: 15  PHVVLSCAMSLDGRIDDCSPSRLILSSPADLDRVDEVRAGCDAILVGAGTVRRDDPGLAV 74

Query: 210 R--------LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI------IVTENDDPV 255
           R            +  +P+R +L     L   ++I +      V                
Sbjct: 75  RSQRRRDARTAAGRTPTPLRAVLTREGDLDPAARIFRDGADRVVYRATAGASGEAAASGG 134

Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
            A +       ++      L  LL  L GRGV  LLVEGG  +  +F+ + LVD + L  
Sbjct: 135 AAASPLAAVATVVDLPEPPLASLLRDLTGRGVRRLLVEGGTTIHTAFLTAGLVDELHLVV 194

Query: 316 SQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYI 355
           +   +GE   P+ +  G                  G  V L Y+
Sbjct: 195 APFFVGEAAAPTFVGPGSFPFDAAHRLQLAEVSQLGDVVLLRYL 238


>gi|119715918|ref|YP_922883.1| deaminase-reductase domain-containing protein [Nocardioides sp.
           JS614]
 gi|119536579|gb|ABL81196.1| bifunctional deaminase-reductase domain protein [Nocardioides sp.
           JS614]
          Length = 231

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 86/221 (38%), Gaps = 12/221 (5%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           +  R +  L   +S D  +  A    + ++     ++V  +RA+SDAI+VG  TV  D+P
Sbjct: 1   MPDRPYTLLSCGMSLDGYLDSASDQRLILSNDADLDRVDAVRAESDAIMVGAATVRNDNP 60

Query: 206 ELTCRLNGLQE--------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
            L  R    ++         SP+++ +    +L    +   T     ++  T    P   
Sbjct: 61  RLLVRDQERRDERVSRGLKPSPLKVTVTCAGRLDPRGRFFTTGESEKLVYCTSGGAPEAR 120

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
                    +       ++++   L  RGV  L+VEGG  +   F+   L D + L  + 
Sbjct: 121 SRLGAVATVVDGGPRVTMRRMSEDLHERGVRRLMVEGGGTIHTQFLTEDLADELHLVVAP 180

Query: 318 IVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLEY 354
             +G+      +++G      ++    V     G  V L Y
Sbjct: 181 FFVGDSRARRFVDDGPFPFRSDRPARLVDVRRIGEVVLLRY 221


>gi|54303332|ref|YP_133325.1| putative riboflavin biosynthesis protein RibD [Photobacterium
           profundum SS9]
 gi|46916762|emb|CAG23525.1| Putative riboflavin biosynthesis protein RibD [Photobacterium
           profundum SS9]
          Length = 141

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/135 (41%), Positives = 77/135 (57%), Gaps = 1/135 (0%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             FM  AL+ S+  +   + NP V C++VK+  ++  G T   G  HAEVQAL       
Sbjct: 3   EIFMLRALQISKSALPDCTPNPPVGCVLVKNDFIVSEGFTQAIGGNHAEVQALNSYSGST 62

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
              TAYVTLEPCS+ GR+P CA  +I  GI+RVVV + DPD R SG+G++ L Q G+ + 
Sbjct: 63  ENITAYVTLEPCSYVGRTPACANTLINSGIKRVVVSMLDPDPRNSGKGVKILEQAGVQVE 122

Query: 127 DRMMESEGKIFLHAY 141
             +   +   FL  Y
Sbjct: 123 IGLCNDQVIHFLAPY 137


>gi|307083979|ref|ZP_07493092.1| riboflavin biosynthesis protein RibD [Mycobacterium tuberculosis
           SUMu012]
 gi|308366346|gb|EFP55197.1| riboflavin biosynthesis protein RibD [Mycobacterium tuberculosis
           SUMu012]
          Length = 206

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 35/227 (15%)

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
            L  +L +Q     H+T K A S D     A   S  I+   ++  +H  RA +DAILVG
Sbjct: 8   PLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAARLDLHRRRAIADAILVG 67

Query: 197 IGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
            GTVLADDP LT RL    L    P+R+++     +  +++++                 
Sbjct: 68  TGTVLADDPALTARLADGSLAPQQPLRVVVGKR-DIPPEARVLNDEART----------- 115

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
                        +     +  ++L  L  R  T +L+EGG  +A +F+ +  ++ I+ Y
Sbjct: 116 -------------MMIRTHEPMEVLRALSDR--TDVLLEGGPTLAGAFLRAGAINRILAY 160

Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
            + I++G    P    +     N     R  F S   +E +G +L L
Sbjct: 161 VAPILLGG---PVTAVDDVGVSNITNALRWQFDS---VEKVGPDLLL 201


>gi|72161280|ref|YP_288937.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermobifida
           fusca YX]
 gi|71915012|gb|AAZ54914.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermobifida
           fusca YX]
          Length = 239

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 9/199 (4%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           +R  + L  A+S D  I  A    + ++     ++V  LRA  DAILVG GT+ AD+P L
Sbjct: 14  ERPRVILSCAMSVDGYIDDASPERLRLSTEADFDEVDELRASCDAILVGAGTIRADNPRL 73

Query: 208 TCRLNGLQEH-----SP---MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
             R    Q+       P    +++L     L   +++  T     ++ V ++        
Sbjct: 74  LVRSPERQQRRLAAGHPAHLRKVVLSTSGDLDPAARVFTTGDAGCLLYVADHAAEAARHR 133

Query: 260 FRK-KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
           F     + ++     DL ++L  L  RGV  LLVEGG AV  +F+   L D + L  +  
Sbjct: 134 FAGTAGVEVVAAGAPDLDRVLADLARRGVRRLLVEGGGAVHTAFLTRNLADELRLAIAPF 193

Query: 319 VIGEGGIPSPLEEGYLEKN 337
            +G+   P  +        
Sbjct: 194 FVGDARAPRFVHPAVFPHR 212


>gi|90578371|ref|ZP_01234182.1| putative riboflavin deaminase [Vibrio angustum S14]
 gi|90441457|gb|EAS66637.1| putative riboflavin deaminase [Vibrio angustum S14]
          Length = 146

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/142 (39%), Positives = 75/142 (52%), Gaps = 1/142 (0%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M     +  FM  AL  S   +     NP V C++VK+G ++  G T   G  HAE  AL
Sbjct: 1   MNHDFQEQAFMIRALLLSHQSLPACRPNPPVGCVLVKEGEIVSEGFTQPPGQHHAEAMAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                     TAYVTLEPCS  GR+P CA  ++E GI++VVV   DPD R SG+G+  L 
Sbjct: 61  ANYDGSFTDVTAYVTLEPCSFVGRTPSCAHTLVELGIKKVVVATLDPDSRNSGKGIAVLK 120

Query: 121 QKGI-IVDRMMESEGKIFLHAY 141
           + GI +   + E+E   F+  Y
Sbjct: 121 EAGIEVEVGLCENEVLDFIEPY 142


>gi|238508822|ref|XP_002385594.1| riboflavin-specific deaminase [Aspergillus flavus NRRL3357]
 gi|220688486|gb|EED44839.1| riboflavin-specific deaminase [Aspergillus flavus NRRL3357]
          Length = 615

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 62/281 (22%), Positives = 114/281 (40%), Gaps = 39/281 (13%)

Query: 111 VSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK---RSHITLKIAVSQDNMIG-- 165
           +S  G ++    GI+  R+ +   K   +    +  +         L      D +    
Sbjct: 313 ISHDGYEYQKGHGIVRIRVTDGNCKAPTNPTPPKTYQDSPLPPDTLLFPQFPLDFLEPYL 372

Query: 166 ---MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN-------GLQ 215
                      ++G  +K   H LR++ DAIL+G+GTVLAD+P L CRL          +
Sbjct: 373 PKYDERRMQTVLSGPEAKLMTHYLRSRHDAILIGVGTVLADNPGLNCRLEGAGGFGGLGR 432

Query: 216 EHSPMRIILDPHFKLS--LDSKIIKTA----LLAPVIIVTEND--DPVLALAFRKKNINI 267
              P  +I+DP  +     + ++++TA      AP ++V+      P   +  +    + 
Sbjct: 433 MWQPRPVIIDPTGRWPVHPECRMLRTAVEGKGKAPWVVVSPGAQIHPQKLMMLKGYGGDF 492

Query: 268 IYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN---SRLVDSIILYRSQI 318
           +     +       + +L  L   GV S+++EGG  V    +N   +  +DSII+  +  
Sbjct: 493 LRIVEYNQNWRLRWEAILRALASEGVKSVMIEGGGTVLSELLNPEYTEFIDSIIVTVAPT 552

Query: 319 VIGEGGIPSPLEEGYLEK-------NFMCVRRDYFGSDVCL 352
            +G GG+P   +    E+       N   V+    G +V +
Sbjct: 553 YLGSGGVPVSPDSKRDEQGKPNAALNPREVKWVPLGQNVIM 593


>gi|225847913|ref|YP_002728076.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644623|gb|ACN99673.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 221

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 15/222 (6%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGC----GSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
            KR +  +   V+ D  + +A        +      +   +H  RA+ D I+VG  T+  
Sbjct: 1   MKRPYTIIISEVTVDGKLTLAKGVSSKEIMKFMDEEANRYLHETRAKVDGIMVGAETIRT 60

Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
           D+P LT R   ++  +P RII      + LD+ ++K    AP II+T    P   +    
Sbjct: 61  DNPYLTVRY--VKGKNPTRIIPTSTADIPLDANVLK--KDAPTIIITTEKAPEEKIKALS 116

Query: 263 KNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
           + + ++    +  DL K++  L  RG+ +L+VEGG+ +  + +N  LVD I +     ++
Sbjct: 117 EKVEVVKIGDEKVDLIKMMDFLYNRGIRTLMVEGGSTLNWNLLNLGLVDEIRIIHMPFIV 176

Query: 321 GEGGIPSPLEEGYLEKNFMCVR---RDYF--GSDVCLEYIGK 357
           G    P+ +     +     +R   R +F  GS +  E+  K
Sbjct: 177 GGTDTPTLVGGEGFKNLDEVIRLKLRAHFMRGSHLITEWEVK 218


>gi|224373556|ref|YP_002607928.1| riboflavin biosynthesis protein RibD [Nautilia profundicola AmH]
 gi|223589572|gb|ACM93308.1| riboflavin biosynthesis protein RibD [Nautilia profundicola AmH]
          Length = 325

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 75/330 (22%), Positives = 118/330 (35%), Gaps = 71/330 (21%)

Query: 15  LRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA--- 70
           +  +  +  LT  NP+V   +IVK+   I  GV    G PHAEV AL EA      A   
Sbjct: 14  INEAWKYQFLTYPNPAVGAAVIVKNQ--IFTGVHKKAGEPHAEVHALWEAYRAFHDAPEL 71

Query: 71  ---------------------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
                                  YVTLEPC+H G++P CA  + E   + V +   DP  
Sbjct: 72  YTSKEIHEYLKKHHNGFFNDANVYVTLEPCAHEGKTPSCAYLLKELKPKSVSIGWPDPIK 131

Query: 110 RVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC 169
              G G++ L   GI V  + +       H        +   +  K+A++ +  I     
Sbjct: 132 GHGG-GVEILKNSGIDVKILNDK---RCFHLIEPFIKWQNRFVFYKLALTMNGAI---TG 184

Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229
           G   I+   S + VH +R + D +++G  TV  D P L  R   +   +P  +I   +  
Sbjct: 185 GY--ISSDESLDWVHNIRDKIDLLVIGGNTVRIDRPTLDARR--VNGKAPDVLIYSKNDG 240

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
           +  D  +         I                             +  L  L       
Sbjct: 241 IERDIPLFNVKNRKVFI-----------------------------EDSLEKLEDYKF-- 269

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
           +++EGG  + +  I   +VD  +   S   
Sbjct: 270 IMIEGGERLYNE-IKH-MVDWKVFIVSPKF 297


>gi|329891051|ref|ZP_08269394.1| riboflavin biosynthesis protein ribD [Brevundimonas diminuta ATCC
           11568]
 gi|328846352|gb|EGF95916.1| riboflavin biosynthesis protein ribD [Brevundimonas diminuta ATCC
           11568]
          Length = 209

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/158 (39%), Positives = 85/158 (53%), Gaps = 2/158 (1%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M   + DA FM  A+  +   +G T  NP+V C++VKDG+V+    TA GG PHAE QA+
Sbjct: 1   MSGPAQDAVFMRRAIDLALSRMGETWPNPAVGCVLVKDGVVLAEAATAPGGRPHAEEQAV 60

Query: 61  EEAGEEARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
            EAGE  +GATAYVTLEPC         CA F+ E G+ RVV+   DP    SGRG + L
Sbjct: 61  PEAGEAVKGATAYVTLEPCGARSSGRKSCAHFLAEAGVERVVIAALDPSPFASGRGTERL 120

Query: 120 SQKG-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKI 156
              G  +   ++  E  +    +L R    R  + + I
Sbjct: 121 RHSGLTVETGLLCEEASVLSEGFLHRLETGRPMVRVSI 158


>gi|195952447|ref|YP_002120737.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Hydrogenobaculum
           sp. Y04AAS1]
 gi|195932059|gb|ACG56759.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Hydrogenobaculum
           sp. Y04AAS1]
          Length = 222

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 85/198 (42%), Gaps = 9/198 (4%)

Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVP----ITGFISKNQVHLLRAQSDAILVGIGT 199
              + + ++ +   ++ D  + +    S      +    +   +H +RA+ DAI+VG  T
Sbjct: 1   MNNQDKPYVIIVSELTLDGKLTLYRGASSKELMTLMDEEAYRYLHEVRAKVDAIMVGCET 60

Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
           +  D+P LT R   ++  +P+R+I      +  D+ ++       +I  T+         
Sbjct: 61  IRTDNPSLTVRY--VKGKNPIRVIPCSTANIPFDANVLSKD-AHTIIATTKRAPEEKIKK 117

Query: 260 FRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
             +  I ++       D + LL  L  + + SL+VEGG+++       + V+ I +    
Sbjct: 118 LTEMGIEVLVTGDYLVDFELLLKKLREKDIKSLMVEGGSSINWELCKLKAVNEIRIIHLP 177

Query: 318 IVIGEGGIPSPLEEGYLE 335
           +++G   +P+ +     +
Sbjct: 178 VIVGGENVPTLVGGEGFK 195


>gi|169844953|ref|XP_001829197.1| riboflavin-specific deaminase [Coprinopsis cinerea okayama7#130]
 gi|116509937|gb|EAU92832.1| riboflavin-specific deaminase [Coprinopsis cinerea okayama7#130]
          Length = 239

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 87/190 (45%), Gaps = 19/190 (10%)

Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR-L 211
           TL  A S D  I       + ++   S    H LR+  DAILVG  T + D+P+L  R L
Sbjct: 16  TLTFAQSLDAKIAGQNGSQIALSCSESMQMTHRLRSLHDAILVGANTAINDNPQLNTRLL 75

Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIK----TALLAPVIIVTENDDP---VLALAFRKKN 264
               + +P  IILD + +L  + K+++       + P ++   +DDP             
Sbjct: 76  PVEDQKNPRPIILDTNLRLGPNCKLLQNYASGRGVQPWLLTPGSDDPDWLKRKSLLEDAG 135

Query: 265 INII------YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL-----VDSIIL 313
             I+           D+  +L  L   G+ SL+VEGGAAV  SF+ + L     +D +I+
Sbjct: 136 ARIVIYAPSGGPRADDVPSILASLSTNGIRSLMVEGGAAVIQSFVTAHLKYGRIIDRVII 195

Query: 314 YRSQIVIGEG 323
             + + +GEG
Sbjct: 196 TVAPVFVGEG 205


>gi|212716410|ref|ZP_03324538.1| hypothetical protein BIFCAT_01333 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660663|gb|EEB21238.1| hypothetical protein BIFCAT_01333 [Bifidobacterium catenulatum DSM
           16992]
          Length = 310

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 49/155 (31%), Positives = 72/155 (46%), Gaps = 4/155 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
            ++M+ AL  +    G  + NP V  ++V+DG ++  G       PHAE  A + A   G
Sbjct: 27  RKYMTQALELAHKGAGWVNPNPLVGTVVVRDGEILAAGYHDRYRGPHAERMAFDYADEHG 86

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            +  GAT   TLEPC H G  P C   I+  GI RVVV   DP+  V+G+GL  L + G+
Sbjct: 87  VDMHGATVIDTLEPCCHVGSQPACTDLILSHGITRVVVGSIDPNPIVAGKGLCILEENGV 146

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAV 158
            +V  +M +E       +         +I      
Sbjct: 147 EVVYDVMRAECDAINRHFFHYITTGMPYIVDGRKH 181


>gi|92113300|ref|YP_573228.1| bifunctional deaminase-reductase-like protein [Chromohalobacter
           salexigens DSM 3043]
 gi|91796390|gb|ABE58529.1| bifunctional deaminase-reductase-like protein [Chromohalobacter
           salexigens DSM 3043]
          Length = 283

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 55/212 (25%), Positives = 87/212 (41%), Gaps = 5/212 (2%)

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
                    +  ++  S D  I      S  +TG  S+  +H LRA  DA+L+G GT  A
Sbjct: 65  PCCATPGRFVIGQLGQSLDGRIATVSGASHYVTGEASRVHLHRLRALVDAVLIGAGTACA 124

Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
           DDP L+ R   +  H+P+R+ILDP+ ++     + +    AP + +T +  P  AL    
Sbjct: 125 DDPRLSVR--HVSGHNPVRVILDPNGRVPATQGVFQND-EAPTLHITRHPLPRGALGAHV 181

Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
               +          L   L  RG+  +LVEGG      F+    +D + +  + ++IG 
Sbjct: 182 DTCVVEDAADLTPAALCRTLAARGLRRVLVEGGGQTVSRFLADGELDRLHVVVAPLLIGS 241

Query: 323 GGIPSPLEEGYLEKNFM--CVRRDYFGSDVCL 352
           G     L E       +    R    G D   
Sbjct: 242 GRPAVSLAEIETLDTALRPPCRTFAMGDDTLF 273


>gi|126734556|ref|ZP_01750302.1| bifunctional deaminase-reductase-like protein [Roseobacter sp.
           CCS2]
 gi|126715111|gb|EBA11976.1| bifunctional deaminase-reductase-like protein [Roseobacter sp.
           CCS2]
          Length = 277

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
           E E +         Q      +  +I  S D  I      +  ++G      +H LRA +
Sbjct: 31  EGEAQALALYGALAQPTATCQVFAQIGQSLDGRIATETGDAQDVSGEDGLAHLHRLRALA 90

Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
           DA+++G+ T L DDP+LT RL      SP R+++DP  +L  D++++       ++I   
Sbjct: 91  DAVVIGVKTALHDDPQLTVRL--ADGTSPARVVIDPDGRLPNDARLLTDTSARRIVI--- 145

Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
                       + I +        + +L  L  RG  S+L+EGG      F+ + L++ 
Sbjct: 146 -QAVAKERPAGVEAITLSRASWIAPEDILGALQERGFKSILIEGGGITITQFLEADLLNR 204

Query: 311 IILYRSQIVIGEG--GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           + L  + ++IG G   + +       E           GSDV  
Sbjct: 205 LHLAIAPLLIGSGPQSLTTAPIGTLAEARRPKTDVYNLGSDVLF 248


>gi|329848658|ref|ZP_08263686.1| riboflavin biosynthesis protein ribD [Asticcacaulis biprosthecum
           C19]
 gi|328843721|gb|EGF93290.1| riboflavin biosynthesis protein ribD [Asticcacaulis biprosthecum
           C19]
          Length = 299

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 56/148 (37%), Positives = 76/148 (51%), Gaps = 4/148 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             FM  A+  +R   G T  NP+V C++VKD +V+G G T  GG PHAE  AL+ AG+ A
Sbjct: 99  EPFMRQAIALAR--PGHTWPNPAVGCVLVKDDVVVGEGATGDGGRPHAEENALDMAGDVA 156

Query: 68  RGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
           RGATAYVTLEPC         C++ ++  G+ RVV   DDP    S  G Q L   GI +
Sbjct: 157 RGATAYVTLEPCGKRSTGCASCSERLVAAGVARVVYACDDPSPFASHVGPQRLRDAGITV 216

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHIT 153
              ++  E    +  +       R  + 
Sbjct: 217 EAGLLHDEAAHLIAPFAHFLKTGRPMVR 244


>gi|289643431|ref|ZP_06475551.1| bifunctional deaminase-reductase domain protein [Frankia symbiont
           of Datisca glomerata]
 gi|289506761|gb|EFD27740.1| bifunctional deaminase-reductase domain protein [Frankia symbiont
           of Datisca glomerata]
          Length = 224

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 12/222 (5%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           + +R ++ L +A+S D  I  AG   + ++     ++V  +RA  DAILVG  T+  D+P
Sbjct: 1   MTQRPYVLLSVAMSVDGYIDDAGDRRLLLSNDADFDRVDEVRAGVDAILVGANTIRRDNP 60

Query: 206 ELTCRLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
            L  R    +E         SP+++ L     L   ++   T  +  ++           
Sbjct: 61  RLLVRSAARREERVACGLPESPVKVTLTGLGDLDRGARFFTTGQVEKIVYAACPAADRAR 120

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
                    +   D  DL  +L  L  RG+  L+VEGG+A+   F+ + LVD I L  + 
Sbjct: 121 ERLAGVASVVDAGDPIDLNVVLADLAARGIHRLMVEGGSAIHTRFLTAGLVDEIHLVIAP 180

Query: 318 IVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCLEYI 355
             +G+   P  + +G   +              G  V L Y+
Sbjct: 181 FFVGDPTAPRFVGDGVFPRHAGHRMELAEARPLGDVVLLRYL 222


>gi|237653124|ref|YP_002889438.1| bifunctional deaminase-reductase domain protein [Thauera sp. MZ1T]
 gi|237624371|gb|ACR01061.1| bifunctional deaminase-reductase domain protein [Thauera sp. MZ1T]
          Length = 290

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 63/272 (23%), Positives = 105/272 (38%), Gaps = 7/272 (2%)

Query: 86  PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQ 145
           P      I                 V G  ++   +      R + ++    L  +L   
Sbjct: 7   PDWGWACILQARDADWAGAGTISFTVEGVAIEIAPRGAWRCARALRADTAELLDLFLPWV 66

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
                    ++  S D  I  A   S  I    ++  +H LRA  DA++VG+GTV ADDP
Sbjct: 67  ARPGRLAIAQLGQSLDGRIATASGASHYINCLEARTHLHRLRALVDAVVVGVGTVNADDP 126

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP--VLALAFRKK 263
           +LT R   +   +P+R++LDP  +   D+++ +      V +V E+  P     L  R  
Sbjct: 127 QLTVR--HVAGRNPVRVVLDPRGRARADARLFQDGAAPTVHLVGEDLAPGTAAVLPGRVA 184

Query: 264 NINIIYCD-CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
              +       +   +L  L   G   +LVEGG      F+ +  ++ + L  + ++IG 
Sbjct: 185 RAGLPGAGSGFEPGAVLDWLARAGCRRVLVEGGGHTVSRFVQAGAIERLHLLVAPLLIGS 244

Query: 323 G--GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           G  G+  P  +   E      R    GSD   
Sbjct: 245 GRAGLVLPPIDTLDEALRPVCRPFRCGSDSLF 276


>gi|255930967|ref|XP_002557040.1| Pc12g01420 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211581659|emb|CAP79769.1| Pc12g01420 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 277

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 33/236 (13%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
              TL  A S D+ + ++      ++G  SK   H LR++ D I++G+GT +ADDP L C
Sbjct: 36  PFTTLTFATSLDSSLALSPGARTVLSGPQSKAMTHYLRSRHDGIVIGVGTAVADDPGLNC 95

Query: 210 RLNGLQEH-------SPMRIILDPHFKL--SLDSKIIK----TALLAPVIIVT-ENDDPV 255
           R++G+  +        P  +++DP  +   S DSK+ +        AP II   E  +  
Sbjct: 96  RISGVGGYGRPGLDGQPRPVVIDPTARWEFSDDSKLFQLCREGRGRAPWIITAVEKPNAE 155

Query: 256 LALAFRKKNINIIYCDCRD---------LKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
                 +     I                 +LL  L   G+ S+++EGG  V  S ++ +
Sbjct: 156 KQALLERYGGRFIQVKMVRTHTGRHQIVWPELLVTLKSNGLRSVMIEGGGHVIKSLLSPQ 215

Query: 307 ---LVDSIILYRSQIVIGEGGIPSPLEEGYLE-------KNFMCVRRDYFGSDVCL 352
              L+DS+I+  +   +GEGG+    +  + +            V+   FG DV L
Sbjct: 216 YMSLLDSVIVTIAPTWLGEGGVVVSPDRRFDDDGNAISAARLKNVKWYPFGEDVVL 271


>gi|126730233|ref|ZP_01746044.1| riboflavin biosynthesis protein RibD [Sagittula stellata E-37]
 gi|126708966|gb|EBA08021.1| riboflavin biosynthesis protein RibD [Sagittula stellata E-37]
          Length = 89

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 50/89 (56%), Positives = 63/89 (70%)

Query: 3  VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
          +++ DARFM+ AL   R  +G T  NP+V CLIV+ G V+GRG T   G PHAE QAL  
Sbjct: 1  MTASDARFMAQALALGRRGMGQTWPNPAVGCLIVRKGRVVGRGWTQPSGRPHAETQALAM 60

Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQF 91
          AG+ ARGAT YVTLEPC+H+G++PPC   
Sbjct: 61 AGDAARGATVYVTLEPCAHHGKTPPCTDA 89


>gi|154150451|ref|YP_001404069.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus
           Methanoregula boonei 6A8]
 gi|153999003|gb|ABS55426.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanoregula
           boonei 6A8]
          Length = 226

 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 54/217 (24%), Positives = 96/217 (44%), Gaps = 15/217 (6%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
            H+ +   ++ D  + +    S  I        ++  +H  RA  DAI+VG  T+  D+ 
Sbjct: 8   PHVLMMSEITADGKLTLKKGASSKILMKYMAHETEILLHETRAAYDAIMVGANTIRIDNS 67

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
            LT RL  +   SP+R+I      + LD+ ++       +I V+E        A R K +
Sbjct: 68  FLTVRL--VPGKSPLRVIPCSMADIPLDANVL-GPDAPTLIAVSEKAPKDRVEAIRAKGV 124

Query: 266 NIIYC--DCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
           N+     D  +L  L+ IL  + GV  L++EGG  +    ++ +LVD I L     ++G 
Sbjct: 125 NVAVAGKDHVELSLLMQILHDKYGVKKLMIEGGPTLNWHMLHDKLVDEIRLIHLPFIVGG 184

Query: 323 GGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEY 354
              PS +   ++      +R +       GS++  E+
Sbjct: 185 SDTPSLVGGMHINTEDEMIRLNLKKYYMCGSNLVSEF 221


>gi|46121465|ref|XP_385287.1| hypothetical protein FG05111.1 [Gibberella zeae PH-1]
          Length = 265

 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 108/231 (46%), Gaps = 29/231 (12%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             +TL  A S D+ + +A      ++G  SK   H LR++ DAIL+G+ T+LAD P L C
Sbjct: 30  PFVTLTFATSLDSSLSLAPGVRTRLSGPDSKAMTHYLRSRHDAILIGVSTLLADYPALNC 89

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDS--KIIKTAL----LAPVIIVTENDDPVLALAF--- 260
           R++G     P  I++DPH + +     K+++ A     LAP ++   +   V A +    
Sbjct: 90  RISGATS-QPRPIVIDPHLRWTPSHTDKVLEVARLGNGLAPFVLTGMDIQDVPAKSLEII 148

Query: 261 RKKNINIIYCDC---------RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL---V 308
            +     +              D + +   L+   ++S++VEGG  + +S ++SR    +
Sbjct: 149 EEHGGKYMQVPTTLGSNGRKRFDWRDVFDALLRENLSSVMVEGGGQIINSLLDSRFHNDI 208

Query: 309 DSIILYRSQIVIGEGGI---PSPLEEGYLEK----NFMCVRRDYFGSDVCL 352
           DS+I+  +   +G+GG+   P  L++             V    FG DV L
Sbjct: 209 DSVIVTIAPTWLGQGGVLVSPDRLQDSTGTPIPVARLSNVSWHPFGEDVVL 259


>gi|332674278|gb|AEE71095.1| riboflavin biosynthesis protein RibD [Helicobacter pylori 83]
          Length = 344

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 77/362 (21%), Positives = 133/362 (36%), Gaps = 77/362 (21%)

Query: 14  ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63
            L  +  H  L   NPSVAC ++ K+  ++          PHAEV A + A         
Sbjct: 11  CLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPSLK 70

Query: 64  --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                   +     +TLEPC+ YG++P C+  +     +RVV+ 
Sbjct: 71  NDLEKLEDPKTLSDFLKTHHNNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIA 130

Query: 104 VDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            ++ + +  G   L+     G++ + +      + L   +  Q  + +   L + ++ D 
Sbjct: 131 TEENEAKKGGLARLKKARIDGVVCEGLENKAKDLLLPFRIMEQKGRFNLFKLALRMNGDY 190

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPM 220
             G        ITG  S    H  RA  D ++V   T+  D+P L  R      Q  +P 
Sbjct: 191 YHG-------KITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPN 243

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
             IL  H  +  +SK+      AP  +V    DP                  +DL     
Sbjct: 244 IAILSKH-SIDPNSKVFS----APNRLVNAFYDP------------------KDLP---- 276

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEK 336
             + +G     +EGG  +  S  +   +D+++L+    +IGE      + +P +   L  
Sbjct: 277 --LEKGFN--FIEGGWELFESLRDK--IDTLLLHSHASMIGEAFNTIALKTPFKGRLLHA 330

Query: 337 NF 338
             
Sbjct: 331 QI 332


>gi|225350924|ref|ZP_03741947.1| hypothetical protein BIFPSEUDO_02499 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158380|gb|EEG71622.1| hypothetical protein BIFPSEUDO_02499 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 191

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 4/146 (2%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
            ++M+ AL  +    G  + NP V  ++V+DG ++  G       PHAE  A + A   G
Sbjct: 40  RKYMTQALELAHKGAGWVNPNPLVGTVVVRDGEILAAGYHDRYRGPHAERMAFDYADEHG 99

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            +  GAT   TLEPC H G  P C   I+  GI RVVV   DP+  V+G+GL+ L + G+
Sbjct: 100 ADMHGATVIDTLEPCCHVGSQPACTDLILSHGITRVVVGSIDPNPIVAGKGLRILEENGV 159

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKR 149
            +V  +M +E       +        
Sbjct: 160 EVVYDVMRAECDAINRHFFHYITTGM 185


>gi|85702872|ref|ZP_01033976.1| riboflavin specific deaminase, putative [Roseovarius sp. 217]
 gi|85671800|gb|EAQ26657.1| riboflavin specific deaminase, putative [Roseovarius sp. 217]
          Length = 237

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 14/208 (6%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            H+  +I  S D  +      +  ++G      +H +RA  DA++VG+ T L DDP LT 
Sbjct: 14  PHVVAQIGQSLDGRVATVSGDAADVSGPDGLAHLHRMRALVDAVIVGVKTALQDDPRLTV 73

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
           RL  +   +P R+++DP  +L  D+++        V+I T           R   + +I 
Sbjct: 74  RL--VAGQNPARVVIDPSGRLPNDARLFADDGARRVVIQTVEKS-------RPAGVEVIT 124

Query: 270 CDC---RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG--G 324
                      ++  L   G+  LLVEGGA     FI + L+  + +  + ++IG G  G
Sbjct: 125 LPRSQWISPAAIVAALRKLGLNHLLVEGGAITIARFIEADLLSRLHVAVAPLLIGAGPQG 184

Query: 325 IPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           + +       +      +    GSDV  
Sbjct: 185 LTTQPIAKLAQARRPETQVYGLGSDVVF 212


>gi|156031052|ref|XP_001584851.1| hypothetical protein SS1G_14134 [Sclerotinia sclerotiorum 1980]
 gi|154700525|gb|EDO00264.1| hypothetical protein SS1G_14134 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 277

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 102/247 (41%), Gaps = 27/247 (10%)

Query: 132 SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191
            E      +     ++   + TL  A S D+ I +      PI+G  SK   H LR++ D
Sbjct: 19  DEYLPTKSSIAAAHLQPLPYATLTYATSMDSQITILPGIGSPISGPDSKAMTHYLRSKHD 78

Query: 192 AILVGIGTVLADDPELTCRLNGLQEH--------SPMRIILDPHFKLSL--DSKII---- 237
           AIL+G+ T +AD+P L CRL G+  +         P  +I+DP  +     +SKI     
Sbjct: 79  AILIGVNTAIADNPSLNCRLEGVGGYGGGDTLKGQPRPVIIDPKGRWEFGKESKIFGLVK 138

Query: 238 KTALLAPVIIVTENDDPVL--------ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
                AP II  + +  +         A   +   +            +L  L    + S
Sbjct: 139 DGKGKAPWIITAQQESKISSQKRNLLDAAGGKFLFVTTDETGKFSWCDILRALRDEDIES 198

Query: 290 LLVEGGAAVAHSFIN--SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK---NFMCVRRD 344
           L++EGGA + +  +     L+ SII+  + + +G+GG+    E    EK       V+  
Sbjct: 199 LMIEGGAGIINDMLARSHNLISSIIVTIAPVWLGKGGVVVTPERENREKEALRLKGVKWI 258

Query: 345 YFGSDVC 351
             G DV 
Sbjct: 259 PLGQDVV 265


>gi|239621600|ref|ZP_04664631.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515475|gb|EEQ55342.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 320

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 70/302 (23%), Positives = 111/302 (36%), Gaps = 45/302 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
             +M+ AL  +    G  + NP V  ++V+D  ++  G       PHAE  A + A   G
Sbjct: 37  REYMTQALELAHRGAGWVNPNPLVGTVVVRDSEILAAGYHDRYRGPHAERMAFDYADEHG 96

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            +  GAT   TLEPC H G  P C   I+  GI RVVV   DP+  V+G+GL+ L + G+
Sbjct: 97  IDMHGATVIDTLEPCCHVGSQPACTDLILSHGITRVVVGSIDPNPIVAGKGLRILEETGV 156

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS-KNQ 182
            +V  +M +E       +                      I      +       + + +
Sbjct: 157 EVVYDVMRAECDAINRHFFHYITTGMP------------YIVDGRKHAEESDAEYAVRRR 204

Query: 183 VHLLRAQSDAILVGIGT-VLADDP----------ELTCRLNGLQEHSPMRIILDPHFKLS 231
              L A   A+L    T   A  P              R     +             +S
Sbjct: 205 G--LYATYAAVLGTCPTGDRAGAPGDSNGTEGSAGSAARFPDWTDR----------LDVS 252

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
             +         PV  V  N+   +A + +  +++I      +  + L  L  R + SL+
Sbjct: 253 DGA---FAYFDGPVQAVDANEA--VAGSHKPLHLDIRALADTEPDEWLRELGRRKIDSLV 307

Query: 292 VE 293
           VE
Sbjct: 308 VE 309


>gi|300114535|ref|YP_003761110.1| bifunctional deaminase-reductase domain-containing protein
           [Nitrosococcus watsonii C-113]
 gi|299540472|gb|ADJ28789.1| bifunctional deaminase-reductase domain protein [Nitrosococcus
           watsonii C-113]
          Length = 364

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 96/235 (40%), Gaps = 17/235 (7%)

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
            L  +     ++   I+  +A + D  I  A   S  I+ +  +   H LRA  DA+LVG
Sbjct: 130 CLAGHHIASQKRLPWISTHLAQTLDGKIAAASGHSQWISNYADRKHAHRLRALHDAVLVG 189

Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK--TALLAPVIIVTENDDP 254
            GTV  D+P LT R   +   +P R+ILD    L    K  +         ++ +++   
Sbjct: 190 RGTVEKDNPRLTVR--EVPGENPKRVILDRQCHLLAGEKPYRIFQEPGHNWLLHSDSLHK 247

Query: 255 VLALAFRKKNINIIYC---------DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           +       + +  +              DLK +L  +   G+ S+ VEGG+     F+  
Sbjct: 248 IETHYAIPRKVIPLGVRDQAGEKNGKLMDLKAILETIWSLGIRSVFVEGGSKTLSFFLAG 307

Query: 306 RLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
              + + L+ + +++G  G+PS   P      E  +  +       ++ LE + +
Sbjct: 308 GQTNLLHLHIAPLLLGS-GLPSFQLPPVARIQEGTYFHMTHFCLDKEILLECLPR 361


>gi|54025279|ref|YP_119521.1| putative riboflavin-specific deaminase [Nocardia farcinica IFM
           10152]
 gi|54016787|dbj|BAD58157.1| putative riboflavin-specific deaminase [Nocardia farcinica IFM
           10152]
          Length = 228

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 89/226 (39%), Gaps = 14/226 (6%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             R ++ L +A S D  +   G   + ++     ++V  +RA+SDAILVG  TV  D+P 
Sbjct: 1   MTRPYVLLSVATSVDGYLDDTGPERLLLSNDADFDRVDQVRAESDAILVGAATVRTDNPR 60

Query: 207 L--------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIK--TALLAPVIIVTENDDPVL 256
           L          R+   +   P+++ +     L   +K     T    PV+  T       
Sbjct: 61  LIVKSEARQAARVAAGRSRHPLKVTVTATGDLDPAAKFWHHGTEDHRPVVYTTSAGHEKT 120

Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
           A         +      D   LL  L GRGV  L+VEGG  +  +F++ RL D ++L   
Sbjct: 121 AQLLDGLADVVDLGPAIDFGALLDDLGGRGVRRLMVEGGGHIHTAFLSHRLADELLLAIG 180

Query: 317 QIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
             V+G+   P  L      G   +          G    L Y+ K 
Sbjct: 181 PTVVGQANAPRFLHPAAFPGGPHRRMRLTDVTRLGDVAVLRYLPKE 226


>gi|27365734|ref|NP_761262.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
           vulnificus CMCP6]
 gi|27361883|gb|AAO10789.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
           vulnificus CMCP6]
          Length = 141

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/135 (42%), Positives = 77/135 (57%), Gaps = 1/135 (0%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
              M  AL  S++ +     NP V C++VK+G ++  G T   G  HAEVQALE    + 
Sbjct: 3   EEHMLRALEVSKFALPNCLPNPPVGCVLVKEGSIVAEGFTQKIGGNHAEVQALEAYSGDM 62

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
              TAYVTLEPCS  GR+P CA  +++ GI+ VVV + DPD R  GRG+Q L Q G+ + 
Sbjct: 63  DSVTAYVTLEPCSFIGRTPACAATLVKSGIKHVVVSILDPDPRNGGRGIQILEQAGVQVD 122

Query: 127 DRMMESEGKIFLHAY 141
             +  S+   FL  Y
Sbjct: 123 IGLCSSQVSAFLEPY 137


>gi|302381385|ref|YP_003817208.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302192013|gb|ADK99584.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 209

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/161 (39%), Positives = 85/161 (52%), Gaps = 2/161 (1%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M  ++ D   M  A+  +   +G T  NP+V C+IVKDG+V+    TA GG PHAE QA+
Sbjct: 1   MSDAAADQVHMRRAIDLALARMGETWPNPAVGCVIVKDGMVLSEAATAPGGRPHAEEQAV 60

Query: 61  EEAGEEARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
             AG    GATAYVTLEPC         CAQF+ E GI RVVV   DP    SGRG + L
Sbjct: 61  PAAGPGVAGATAYVTLEPCGARSSGRASCAQFLAEAGISRVVVAALDPSPFASGRGTERL 120

Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
            Q G+ +   +M+ E  +    +L R    R  + +    +
Sbjct: 121 RQAGLRVETGLMKDEAGVLSEGFLHRLETGRPMVRISADGT 161


>gi|116328771|ref|YP_798491.1| pyrimidine deaminase, riboflavin biosynthesis [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116121515|gb|ABJ79558.1| Pyrimidine deaminase, riboflavin biosynthesis [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
          Length = 432

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/219 (29%), Positives = 106/219 (48%), Gaps = 8/219 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLI--VKDGIVIGRGVTAYGGCPHAEVQA- 59
           ++     F     + S    G +S NP V+CLI  V +  ++ +G T+  G PHAE  A 
Sbjct: 1   MTLLPEEFREELRKLSFLSTGESSPNPPVSCLITDVDNARILAKGWTSPTGGPHAERNAY 60

Query: 60  --LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG-L 116
               + G        +VTLEPC+H G++PPC   I+E   + +     DP+  V     L
Sbjct: 61  YEFVKNGFFKEPHNVWVTLEPCTHSGKTPPCLDLILEHKPKTLYYGRKDPNPLVRENEGL 120

Query: 117 QWLSQKGI--IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           +   ++GI  + +  +    +  L  +++R   K+  + LK A+S++          V  
Sbjct: 121 ELCRRRGILVVAEPGLREIAEESLFGFVSRIERKKPSMILKTALSKEGFFSKRDKFPVRF 180

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213
           +G IS +   +LRA+ DA+LVG GT+  D+P L  R+  
Sbjct: 181 SGNISNHLTSILRAKCDAVLVGPGTLFHDNPGLEFRIGE 219


>gi|294142852|ref|YP_003558830.1| riboflavin-specific deaminase [Shewanella violacea DSS12]
 gi|32562925|dbj|BAC79238.1| putative riboflavin deaminase [Shewanella violacea]
 gi|293329321|dbj|BAJ04052.1| riboflavin-specific deaminase, putative [Shewanella violacea DSS12]
          Length = 143

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 58/138 (42%), Positives = 80/138 (57%), Gaps = 1/138 (0%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
            FD +FM  AL+ S+  +     NP V C++V D  VI  G T   G  HAE++AL    
Sbjct: 2   DFDKKFMLRALKLSQTALPECQPNPPVGCVLVLDDQVIAEGYTQKIGGNHAEMEALNAYD 61

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 TAYVTLEPCS  GR+P CA  +++ GI+RVVV + DPD+R +G+G+Q L ++GI
Sbjct: 62  GSMGLVTAYVTLEPCSFVGRTPACASTLVKSGIKRVVVAILDPDLRNNGKGIQTLEKEGI 121

Query: 125 -IVDRMMESEGKIFLHAY 141
            +   +   E   FL  Y
Sbjct: 122 KVDIGVASKEVSEFLSPY 139


>gi|86145701|ref|ZP_01064030.1| putative riboflavin deaminase [Vibrio sp. MED222]
 gi|85836400|gb|EAQ54529.1| putative riboflavin deaminase [Vibrio sp. MED222]
          Length = 145

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 55/131 (41%), Positives = 74/131 (56%), Gaps = 4/131 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE----EA 63
            ++M  AL  SR  +     NP V C++VK+  V+  G T   G  HAEV+AL     E 
Sbjct: 3   QQYMLQALEASRQALPDCQPNPPVGCVLVKNDKVVSVGYTQKVGGNHAEVEALNGYDCET 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
             E  G TAYVTLEPCS  GR+P CA  +++ G++ VVV + DPD R +GRG+  L   G
Sbjct: 63  DGEMEGVTAYVTLEPCSFVGRTPACASTLVKAGVKHVVVAMLDPDPRNNGRGVAILESHG 122

Query: 124 IIVDRMMESEG 134
           + VD  +  E 
Sbjct: 123 VKVDVGLCQEQ 133


>gi|218676953|ref|YP_002395772.1| Probable riboflavin biosynthesis protein [Vibrio splendidus LGP32]
 gi|218325221|emb|CAV27160.1| Probable riboflavin biosynthesis protein [Vibrio splendidus LGP32]
          Length = 145

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/131 (41%), Positives = 74/131 (56%), Gaps = 4/131 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE----EA 63
            ++M  AL  SR  +     NP V C++VK+  V+  G T   G  HAEV+AL     E 
Sbjct: 3   QQYMLQALEASRQALPDCQPNPPVGCVLVKNDKVVSVGYTQKVGGNHAEVEALNGYDCET 62

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
             E  G TAYVTLEPCS  GR+P CA  +++ G++ VVV + DPD R +GRG+  L   G
Sbjct: 63  DGEMEGVTAYVTLEPCSFVGRTPACASTLVKAGVKHVVVAMLDPDPRNNGRGVAILESHG 122

Query: 124 IIVDRMMESEG 134
           + VD  +  E 
Sbjct: 123 VKVDVGLCQEQ 133


>gi|330506465|ref|YP_004382893.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Methanosaeta
           concilii GP-6]
 gi|328927273|gb|AEB67075.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Methanosaeta
           concilii GP-6]
          Length = 220

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 78/174 (44%), Gaps = 14/174 (8%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             R  + +  A+S D  I       + I+G     +V  LRA SDAI+VG+GTVLADDP 
Sbjct: 1   MNRPFVFINSAMSADGKISSRDRRQIRISGKEDLMRVDELRAASDAIMVGVGTVLADDPG 60

Query: 207 LTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           L          R +  Q   P RI+ D + +   ++KI+    +    I      P   L
Sbjct: 61  LRVKSRILREKRKDMGQLKEPFRIVADSNARTPANAKILGPGCM----IAVSYSAPEERL 116

Query: 259 AFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
              +    II C     DL  L+  L  RGV  L+VEGGA +  S I   LVD 
Sbjct: 117 DRLRSGCEIIKCGTEMVDLPGLMEELYNRGVRRLMVEGGARLNWSLIELGLVDE 170


>gi|193884346|dbj|BAG54993.1| riboflavin biosynthesis protein ribG [Amphibacillus xylanus]
          Length = 198

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 87/205 (42%), Gaps = 18/205 (8%)

Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS 218
           + D  + +       ITG  +   V   R     ILVG  T+L D+P L   L   Q   
Sbjct: 5   TLDGKLSLDSKR-TAITGKDTYQYVRKERNHYQGILVGSQTILTDNPFL---LGTDQTLH 60

Query: 219 PMRIILDPHFKL--SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276
           P+RIILD   +L   LD  +      +PV I TE            K++  I      +K
Sbjct: 61  PIRIILDRRGRLFNKLDLNVF-INQASPVWIFTER----KVNIKLPKHVEAIVLKSATVK 115

Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
            ++  L  R + SL VEGGA V  SF+NS   D +I Y +  VIG  G+P+      + +
Sbjct: 116 SIIKELTRRNIHSLYVEGGAKVHDSFLNSGYWDQMITYIAPKVIGGNGVPAMSSTREVNQ 175

Query: 337 NFMCVRRDYFGSDVCLEYIGKNLCL 361
                       +V +E I  +L +
Sbjct: 176 VIELT-------NVTVESIHDDLRI 193


>gi|89074668|ref|ZP_01161133.1| Putative riboflavin biosynthesis protein RibD [Photobacterium sp.
           SKA34]
 gi|89049606|gb|EAR55166.1| Putative riboflavin biosynthesis protein RibD [Photobacterium sp.
           SKA34]
          Length = 146

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/137 (39%), Positives = 73/137 (53%), Gaps = 1/137 (0%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            +  FM  AL  S   +     NP V C++VK+G ++  G T   G  HAE  AL     
Sbjct: 6   QEQAFMIRALLLSHQSLPDCRPNPPVGCVLVKNGEIMSEGFTQPPGQYHAEAMALANYHG 65

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
                TAYVTLEPCS  GR+P CA   +E GI++VVV   DPD R SG+G+  L + G+ 
Sbjct: 66  SFTDVTAYVTLEPCSFVGRTPSCAHTFVELGIKKVVVATLDPDSRNSGKGIAILKEAGVE 125

Query: 125 IVDRMMESEGKIFLHAY 141
           +   + E+E   F+  Y
Sbjct: 126 VEVGLCENEVLDFIEPY 142


>gi|302895311|ref|XP_003046536.1| hypothetical protein NECHADRAFT_34089 [Nectria haematococca mpVI
           77-13-4]
 gi|256727463|gb|EEU40823.1| hypothetical protein NECHADRAFT_34089 [Nectria haematococca mpVI
           77-13-4]
          Length = 268

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 30/235 (12%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             R  +TL  A S D+ + +A      ++G  SK   H LR++  AIL+G+ T+LAD P 
Sbjct: 29  PSRPFVTLTFATSLDSSLSLAPGVRTRLSGPGSKAMTHYLRSRHAAILIGVSTLLADSPA 88

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDS--KIIKTALLAP-------VIIVTENDDPVLA 257
           L CR+ G     P  II+DPH +   D   K+++ A L           + +E+     A
Sbjct: 89  LNCRIAGA-ARQPRPIIIDPHLRWVPDPTDKVLEVARLGTGLAPFVLTGVGSESLPAASA 147

Query: 258 LAFRKKNINIIYCDC----------RDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN--- 304
               +     I+              D + +   L+   +TS++VEGG  + +S +N   
Sbjct: 148 ALLEQHGGKYIHVPATSSGPGSRMRFDWRAVFDALLREHLTSVMVEGGGQIINSLLNPTF 207

Query: 305 SRLVDSIILYRSQIVIGEGGI---PSPLEE----GYLEKNFMCVRRDYFGSDVCL 352
             ++DS+I+  +   +G+GG+   P  L++             V    FG DV L
Sbjct: 208 HDMIDSVIVTIAPTWLGQGGVVVSPDRLQDSAGVPVPAARLSEVSWHPFGEDVVL 262


>gi|224154958|ref|XP_002337544.1| predicted protein [Populus trichocarpa]
 gi|222839542|gb|EEE77879.1| predicted protein [Populus trichocarpa]
          Length = 436

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 86/207 (41%), Gaps = 11/207 (5%)

Query: 154 LKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213
           +K A S D    +    S  IT   ++   H  RA++  IL GIGTV+ DDP L  R + 
Sbjct: 1   MKAASSLDGATALHNGTSQWITSPEARADGHAWRARACTILTGIGTVVEDDPRLNVR-DV 59

Query: 214 LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC- 272
                P   ++D    + L +++++    A  +I T + D     A +     +I     
Sbjct: 60  ATPRQPRIAVVDSRLDMPLTARVLQ--APAGCLIYTSSRDASKTSALQDLGTTVIPMPNA 117

Query: 273 ---RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP--- 326
               DL  +L  L  RG   L VE G  +  S +   LVD ++LY +  ++G GG+    
Sbjct: 118 HGKVDLCAMLRDLAARGTNELHVEAGFKLNGSLVREGLVDELLLYLAPKLLGTGGMGIAS 177

Query: 327 -SPLEEGYLEKNFMCVRRDYFGSDVCL 352
             PL+                G D+ +
Sbjct: 178 FGPLDALSEAIALALHDVQRIGPDLRV 204


>gi|269126070|ref|YP_003299440.1| bifunctional deaminase-reductase domain-containing protein
           [Thermomonospora curvata DSM 43183]
 gi|268311028|gb|ACY97402.1| bifunctional deaminase-reductase domain protein [Thermomonospora
           curvata DSM 43183]
          Length = 228

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 86/227 (37%), Gaps = 12/227 (5%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           +  R ++ L  A+S D  I  A    + ++     ++V  +RA  DAILVG  T+  DDP
Sbjct: 1   MSDRPYVLLSCAMSVDGYIDDARPERLRLSSPADFDRVDGVRATCDAILVGAETIRRDDP 60

Query: 206 ELTCRLNGLQEHSPMR--------IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
           +L  +    QE    R        + L     L   S+   T     ++       P LA
Sbjct: 61  KLLIKSPVRQERRAARGLPRQLTKVTLTLRGDLDPTSRFFTTGDCPKLVYAGSRAVPALA 120

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
                    I   D  D++ +L  L  RGV  L+VEGG  +   F+   L D + L  + 
Sbjct: 121 ERLEGVAEVIDGGDPVDVRLVLADLARRGVRRLMVEGGGGMHTLFLTEGLADELHLVVAP 180

Query: 318 IVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEYIGKNLC 360
             IG+   P  +  G   ++             G    L Y+ K   
Sbjct: 181 FFIGDPSAPRFVHPGLFPQDPAHPMRLAEVTRIGDLALLRYLLKRSR 227


>gi|315040531|ref|XP_003169643.1| hypothetical protein MGYG_08552 [Arthroderma gypseum CBS 118893]
 gi|311346333|gb|EFR05536.1| hypothetical protein MGYG_08552 [Arthroderma gypseum CBS 118893]
          Length = 645

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/251 (25%), Positives = 104/251 (41%), Gaps = 31/251 (12%)

Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
           E +   +A       K  H+TL  A S D  I         ++G  +K   H LR++ DA
Sbjct: 366 ECQSNGNANPNSGEAKFPHVTLTYAQSMDGKISTKPGVQTVLSGPETKTMTHYLRSRHDA 425

Query: 193 ILVGIGTVLADDPELTCRLNGLQE-------HSPMRIILDPHFKL--SLDSKIIKTALL- 242
           I++G+GT +ADDP L CRL G            P  +I+DP  +   S DS+++ TA   
Sbjct: 426 IIIGLGTAVADDPGLNCRLEGAGGFGGFGTMWQPRPVIIDPTGRWSASADSRLLMTAAEG 485

Query: 243 ---APVIIVTENDDPVLALAFRKKNINIIYCDCRD--------LKKLLTILVGRGVTSLL 291
              AP +IV+   + +       K     Y   R+         + +   L  +G+ S++
Sbjct: 486 KGKAPWVIVSPGAELLPDKLLLLKRHGGDYLRIREYNPHWRLRWEAIFGALANQGIRSVM 545

Query: 292 VEGGAAVAHSFINS---RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF-------MCV 341
           +EGG  V    +N      VDS+I+  +   IG  G+    +    E            +
Sbjct: 546 IEGGGIVLSELLNPEYVDFVDSVIVTVAPTYIGRNGVSVSPDSKQDEHGSPINALTPHNI 605

Query: 342 RRDYFGSDVCL 352
           +    G DV +
Sbjct: 606 KWQPLGKDVIM 616


>gi|145346176|ref|XP_001417569.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577796|gb|ABO95862.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 147

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/139 (46%), Positives = 83/139 (59%), Gaps = 4/139 (2%)

Query: 11  MSAALRFSRWHVGLTS-TNPSVACLIV--KDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           M  AL  +       +  NP V C++V  ++ +V+G G     G PHAEV AL  AGE A
Sbjct: 1   MRRALEVAATATTAETFPNPRVGCVVVDAREDVVVGEGYHPKAGEPHAEVFALRAAGELA 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           RGATAYVTLEPC+HYGR+PPCA+ +++ G+ RVVV   DPD RVSG G+Q L   GI V 
Sbjct: 61  RGATAYVTLEPCNHYGRTPPCARALVDAGVARVVVGFIDPDPRVSGGGIQTLLDAGIEVA 120

Query: 128 RMMESE-GKIFLHAYLTRQ 145
              E    +     ++ RQ
Sbjct: 121 VGCEEALCREINADFIARQ 139


>gi|297200713|ref|ZP_06918110.1| bifunctional enzyme deaminase/reductase [Streptomyces sviceus ATCC
           29083]
 gi|197712280|gb|EDY56314.1| bifunctional enzyme deaminase/reductase [Streptomyces sviceus ATCC
           29083]
          Length = 375

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 85/220 (38%), Gaps = 12/220 (5%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
               ++ L  AVS D  +   G   + ++G    ++V  +RA  DAILVG GT+ AD+P 
Sbjct: 1   MPHPYVLLSAAVSLDGYLDDTGPDRLLLSGPADFDRVDEVRASVDAILVGAGTIRADNPR 60

Query: 207 L--------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           L          R+   +   P+++ +    +L  D+    T      ++ T +     A 
Sbjct: 61  LLVNSETRRAARVAAGKPPYPLKVTVSGSGELDPDANFWHTGGDK--LVFTTDQGAQRAR 118

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
           A       +      D ++LL  L   RGV  L+VEGG  +    +   L D + L  + 
Sbjct: 119 ALGLAADVVSLGPELDWRRLLEHLHEERGVERLMVEGGGRIHTQLLQQGLADEVQLVLAP 178

Query: 318 IVIGEGGIPSPLEEG-YLEKNFMCVRRDYFGSDVCLEYIG 356
           + +G    P     G Y       V        V + Y  
Sbjct: 179 LFVGSPEAPRLFGPGAYQSGRLRLVETRRIEDVVLMRYEP 218



 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 9/138 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--HAEVQALEE- 62
           D  +++ A   +      + T  SV  ++V  DG  + RG +  G  P  HAE  AL + 
Sbjct: 231 DHHWLALACELATR-CPPSQTAFSVGAVVVAADGTELARGHSREGDDPVVHAEEAALAKI 289

Query: 63  --AGEEARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-W 118
             A      AT Y +LEPC+H    P PCA+ I++ G+RRVV    +PD  V+G      
Sbjct: 290 DPADPRLATATVYTSLEPCTHRASRPAPCARLILDAGVRRVVTAWREPDTFVAGADGTGT 349

Query: 119 LSQKGIIVDRMMESEGKI 136
           L+  G+ V  + E E + 
Sbjct: 350 LTAAGVDVVVLGEHEERA 367


>gi|148975779|ref|ZP_01812610.1| Probable riboflavin biosynthesis protein RibD [Vibrionales
           bacterium SWAT-3]
 gi|145964852|gb|EDK30104.1| Probable riboflavin biosynthesis protein RibD [Vibrionales
           bacterium SWAT-3]
          Length = 141

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/127 (40%), Positives = 72/127 (56%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            ++M  AL+ S   +     NP V C++VK+  V+  G T   G  HAEV+AL     + 
Sbjct: 3   QQYMLQALQASHQALPDCQPNPPVGCILVKNDKVVSVGYTQKVGGNHAEVEALNHYDGDM 62

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            G TAYVTLEPCS  GR+P CA  +++ G++ VVV + DPD R +GRG+  L   G+ VD
Sbjct: 63  EGVTAYVTLEPCSFVGRTPACANTLVKAGVKHVVVAMLDPDPRNNGRGVAILESHGVKVD 122

Query: 128 RMMESEG 134
             +    
Sbjct: 123 VGLCQAQ 129


>gi|317179684|dbj|BAJ57472.1| riboflavin biosynthesis protein [Helicobacter pylori F30]
          Length = 344

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 76/362 (20%), Positives = 134/362 (37%), Gaps = 77/362 (21%)

Query: 14  ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63
            L  +  H  L   NPSVAC ++ K+  ++          PHAEV A + A         
Sbjct: 11  CLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKVLRPSLK 70

Query: 64  --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                   +     +TLEPC+ YG++P C+  +     +RVV+ 
Sbjct: 71  NDLEKLEDPKTLSDFLKTHHNNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIA 130

Query: 104 VDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            ++ + +  G   LQ    +G++ + +      + L   +  Q  + +   L + ++ D 
Sbjct: 131 TEENEAKKGGLARLQKARIEGVVCESLENKAKDLLLPFRIMEQKGRFNLFKLALRMNGDY 190

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPM 220
             G        ITG  S    H  RA  D ++V   T+  D+P L  R      Q+ +P 
Sbjct: 191 HHG-------KITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQDKNPN 243

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
             IL     +  +SK+      AP  +V                    +CD +DL     
Sbjct: 244 IAILSKR-SIDPNSKVFS----APNRLVNA------------------FCDPKDLP---- 276

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEK 336
             + +G     +EGG  +  S  +   +D+++L+    +I E      + +P +   L  
Sbjct: 277 --LEKGFN--FIEGGWELFESLRDK--IDALLLHSHASMISEAFNAIALKTPFKGRLLHA 330

Query: 337 NF 338
             
Sbjct: 331 QI 332


>gi|76801978|ref|YP_326986.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Natronomonas
           pharaonis DSM 2160]
 gi|76557843|emb|CAI49427.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Natronomonas
           pharaonis DSM 2160]
          Length = 219

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 88/207 (42%), Gaps = 12/207 (5%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             +T+  A+S D  +       + I+G     +++ LRA  DA+LVG+GTVLAD+P L  
Sbjct: 1   MDVTVNAAMSADGKLSSRRREQIAISGDADFERMYRLRAAVDAVLVGVGTVLADNPSLRS 60

Query: 210 RLN-------GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV-LALAFR 261
                     G     P R++ D   +   D+ I+  A      ++T    P     A R
Sbjct: 61  HDEAHRAEVYGPDADPPARVVADSACRTPPDADIL--AGEPDTYVLTSGAAPEDRRAALR 118

Query: 262 KKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
           +    +I  D     L      L  RG+  L+VEGG  +  S   + LVDS+ +Y   +V
Sbjct: 119 EAGAELIVTDGDRVSLSTAFAELAARGIDRLMVEGGGELIFSLFEAGLVDSLSVYIGDLV 178

Query: 320 IGEGGIPSPLEEGYLEKNFMCVRRDYF 346
           IG    P+  +      +F  +  D  
Sbjct: 179 IGGRDAPTLADGEGFVADFPELELDEV 205


>gi|15898882|ref|NP_343487.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
           solfataricus P2]
 gi|2493564|sp|P95872|RIB7_SULSO RecName: Full=Putative 5-amino-6-(5-phosphoribosylamino)uracil
           reductase; AltName: Full=HTP reductase
 gi|1707704|emb|CAA69508.1| riboflavin biosynthesis protein ribG [Sulfolobus solfataricus P2]
 gi|13815385|gb|AAK42277.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase (ribD)
           [Sulfolobus solfataricus P2]
 gi|261603290|gb|ACX92893.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Sulfolobus solfataricus 98/2]
          Length = 213

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 87/210 (41%), Gaps = 11/210 (5%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++ +   VS D  +         ++    K + H +R++ DA++VG  TV  D+P LT 
Sbjct: 5   PYVIIFSTVSIDGRLATKTG-YSELSCPYDKQRQHEIRSEVDAVMVGANTVRVDNPSLTV 63

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
           +  G    +P+R+++   F L    KI  T      +I T N +      F +K + +  
Sbjct: 64  KY-GKNRRNPIRVVVTRSFNLDPSYKIFTTPPS--TVIYTSNYESEKVEEFIRKGVIVRK 120

Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
               D            V  L+VEGG  +   FI   L D I +  S  + G  G+    
Sbjct: 121 FLHLDDLLEDLY-DNFNVRRLMVEGGGHLIWWFIKDNLYDEIRITISPRIFG-NGVSFTQ 178

Query: 330 EEGYLEKN-----FMCVRRDYFGSDVCLEY 354
            EG++ ++      +  +    G++V L Y
Sbjct: 179 GEGFIGEDSPRLELIDAKICECGNEVHLTY 208


>gi|284173977|ref|ZP_06387946.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
           solfataricus 98/2]
          Length = 211

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 87/210 (41%), Gaps = 11/210 (5%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++ +   VS D  +         ++    K + H +R++ DA++VG  TV  D+P LT 
Sbjct: 3   PYVIIFSTVSIDGRLATKTG-YSELSCPYDKQRQHEIRSEVDAVMVGANTVRVDNPSLTV 61

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
           +  G    +P+R+++   F L    KI  T      +I T N +      F +K + +  
Sbjct: 62  KY-GKNRRNPIRVVVTRSFNLDPSYKIFTTPPS--TVIYTSNYESEKVEEFIRKGVIVRK 118

Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
               D            V  L+VEGG  +   FI   L D I +  S  + G  G+    
Sbjct: 119 FLHLDDLLEDLY-DNFNVRRLMVEGGGHLIWWFIKDNLYDEIRITISPRIFG-NGVSFTQ 176

Query: 330 EEGYLEKN-----FMCVRRDYFGSDVCLEY 354
            EG++ ++      +  +    G++V L Y
Sbjct: 177 GEGFIGEDSPRLELIDAKICECGNEVHLTY 206


>gi|120554594|ref|YP_958945.1| deaminase-reductase domain-containing protein [Marinobacter
           aquaeolei VT8]
 gi|120324443|gb|ABM18758.1| bifunctional deaminase-reductase domain protein [Marinobacter
           aquaeolei VT8]
          Length = 288

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 107/272 (39%), Gaps = 20/272 (7%)

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
            I    I   V   D P V+++G+  +       +     ++   + L   L + V   S
Sbjct: 18  AINRSNITLPVPGSDQPAVKINGKSWEL------VQPASEQARNLLSLFLPLCQPVTTNS 71

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
            +  ++  S D  I      S  I G      +H +RA  DA++VG GT   D+P LT R
Sbjct: 72  RVIGQLGQSLDGRIATVTGCSRFINGDDGITHLHRIRALCDAVVVGAGTASTDNPRLTVR 131

Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270
                  +P+R+++D   ++     +  T   AP + +   D            +  + C
Sbjct: 132 RT--SGRNPVRVVIDRRQRVPASHHLF-TDGDAPTLHLIAGDYQPGPKTLDPTGVTTVPC 188

Query: 271 -------DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
                       +++L +L   G+  + +EGG     SF+ + L+D + +  + ++IG  
Sbjct: 189 LGSAENEAPASPERILQVLQDFGLRKIFIEGGGVTVSSFLKAGLLDRLHVMVAPMIIGS- 247

Query: 324 GIPS---PLEEGYLEKNFMCVRRDYFGSDVCL 352
           G P+   P  +   E      +    GSD+  
Sbjct: 248 GRPAFSLPEIDQLDEALRPKAQLVNLGSDMLF 279


>gi|317181190|dbj|BAJ58976.1| riboflavin biosynthesis protein [Helicobacter pylori F32]
          Length = 344

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 77/362 (21%), Positives = 132/362 (36%), Gaps = 77/362 (21%)

Query: 14  ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63
            L  +  H  L   NPSVAC ++ K+  ++          PHAEV A + A         
Sbjct: 11  CLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPGLK 70

Query: 64  --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                   +     +TLEPC+ YG++P C+  +     +RVV+ 
Sbjct: 71  NDLEKLEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIA 130

Query: 104 VDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            ++ + +  G   LQ     G++ + +      + L   +  Q  + +   L + ++ D 
Sbjct: 131 TEENEAKKGGLARLQKARIDGVVCESLENKAKDLLLPFRIMEQKGRFNLFKLALRMNGDY 190

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPM 220
             G        ITG  S    H  RA  D ++V   T+  D+P L  R      Q  +P 
Sbjct: 191 CHG-------KITGQKSVIFTHNQRAVCDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPN 243

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
             IL     +  +SK+      AP  +V    DP                  +DL     
Sbjct: 244 IAILSKR-SIDPNSKVFS----APNRLVNAFYDP------------------KDLP---- 276

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEK 336
             + +G     +EGG  +  S  +   +D+++L+    +IGE      + +P +   L  
Sbjct: 277 --LEKGFN--FIEGGWELFESLRDK--IDALLLHSHASMIGEAFNTLALKTPFKGRLLHA 330

Query: 337 NF 338
             
Sbjct: 331 QI 332


>gi|219852683|ref|YP_002467115.1| bifunctional deaminase-reductase domain protein [Methanosphaerula
           palustris E1-9c]
 gi|219546942|gb|ACL17392.1| bifunctional deaminase-reductase domain protein [Methanosphaerula
           palustris E1-9c]
          Length = 234

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 50/217 (23%), Positives = 91/217 (41%), Gaps = 15/217 (6%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
            H+ L   ++ D  + +    S  I        ++  +H  RA  DAI+VG  T+  D+ 
Sbjct: 8   PHVLLMSEITADGKLTLKKGSSSKILMKYMAPETEVLLHQTRAACDAIMVGSNTIRIDNS 67

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
            LT R+  +   SP+R+I      + LD+ ++       ++ V  +       A R K  
Sbjct: 68  FLTVRI--VPGESPLRVIPSSQADIPLDANVL-GPDARTLVAVATSAPEEKIAAIRAKGA 124

Query: 266 NIIYC--DCRDLKKLLTILV-GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
            ++    D  DL  L+ +L     V  L++EGG  +    +  +LVD I L     ++G 
Sbjct: 125 MVVVAGDDHVDLSTLMHLLWRDFHVRRLMIEGGPTLNWHMLIHQLVDEIRLIHLPFIVGG 184

Query: 323 GGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEY 354
              PS +   +++     +R         G+++  EY
Sbjct: 185 ADTPSLVGGMHIDSEDQMIRLQLKNHYLCGTNLVTEY 221


>gi|331695256|ref|YP_004331495.1| bifunctional deaminase-reductase domain-containing protein
           [Pseudonocardia dioxanivorans CB1190]
 gi|326949945|gb|AEA23642.1| bifunctional deaminase-reductase domain protein [Pseudonocardia
           dioxanivorans CB1190]
          Length = 231

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 59/231 (25%), Positives = 96/231 (41%), Gaps = 12/231 (5%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           +  R H+ L  AVS D  I       + ++     ++V  +RA  DAILVG  T+  DDP
Sbjct: 1   MTGRPHVLLSAAVSLDGCIDDVSRRRLILSNDADLDRVDEVRASVDAILVGANTIRTDDP 60

Query: 206 ELTCRLNGLQE--------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
            L  R    +          SP+++ L    K+S DS+ + T     V+    +    + 
Sbjct: 61  RLLVRSAARRAARVATGRAPSPVKVTLTRTGKISPDSRFLTTGDGDRVVYAPTSAVADVR 120

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
                    +   D  D+  LL  L  RGV  L+VEGG+ V   F++S LVD + +  + 
Sbjct: 121 ERVGAAATVVGAGDPLDVTVLLDDLHRRGVRRLMVEGGSEVHTLFMSSGLVDELHVVFAP 180

Query: 318 IVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCLEYIGKNLCLQEL 364
            ++G+ G P  +      +        V     G  V L Y+  +   + +
Sbjct: 181 FLVGQPGAPRFVNAAVFPQGPGNRMRLVEARPIGDVVLLRYVPVDAGSRAI 231


>gi|229526073|ref|ZP_04415477.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
           cholerae bv. albensis VL426]
 gi|229336231|gb|EEO01249.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
           cholerae bv. albensis VL426]
          Length = 141

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 59/135 (43%), Positives = 78/135 (57%), Gaps = 1/135 (0%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
              M  AL  S++ +     NP V C++VK G ++  G T   G  HAEVQALE    + 
Sbjct: 3   EEHMLRALEVSKFALPNCLPNPPVGCVLVKGGSIVAEGFTQKIGGNHAEVQALEAYSGDM 62

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
              TAYVTLEPCS  GR+P CA  +++ GI+ VVV + DPD+R SGRG+Q L Q GI + 
Sbjct: 63  DSVTAYVTLEPCSFIGRTPACAATLVKSGIKHVVVSILDPDLRNSGRGIQILEQAGIQVD 122

Query: 127 DRMMESEGKIFLHAY 141
             +  S+   FL  Y
Sbjct: 123 IGLCSSQVSAFLDPY 137


>gi|84387508|ref|ZP_00990526.1| Probable riboflavin biosynthesis protein RibD [Vibrio splendidus
           12B01]
 gi|84377556|gb|EAP94421.1| Probable riboflavin biosynthesis protein RibD [Vibrio splendidus
           12B01]
          Length = 145

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 54/139 (38%), Positives = 78/139 (56%), Gaps = 5/139 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65
            ++M  AL  SR  +     NP V C++VK+  V+  G T   G  HAEV+AL    +  
Sbjct: 3   QQYMLQALEASRQALPDCQPNPPVGCVLVKNDKVVSVGYTQKVGGNHAEVEALNSYDDGL 62

Query: 66  --EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
             E  G TAYVTLEPCS  GR+P CA  +++ G++ VVV + DPD R +GRG+  L   G
Sbjct: 63  DGEMEGITAYVTLEPCSFVGRTPACANTLVKAGVKHVVVAMLDPDPRNNGRGVAILESHG 122

Query: 124 I-IVDRMMESEGKIFLHAY 141
           + +   + +++   FL  Y
Sbjct: 123 VKVDVGLCQAQVSAFLTPY 141


>gi|86739889|ref|YP_480289.1| bifunctional deaminase-reductase-like protein [Frankia sp. CcI3]
 gi|86566751|gb|ABD10560.1| bifunctional deaminase-reductase-like [Frankia sp. CcI3]
          Length = 283

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 93/250 (37%), Gaps = 42/250 (16%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++    A+S D  I  +    + ++     ++V  +RA  DAILVG  TV  D+P L  
Sbjct: 31  PYVICSCAMSLDGHIDDSSAERMILSSAADLDRVDEVRAGCDAILVGAATVRRDNPRLAV 90

Query: 210 R--------LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI---------IVTEND 252
           R            +  +P++++L     L   +++     +  +I         I     
Sbjct: 91  RAQHRRVAREAAGRPPTPIKVVLSGGGDLDPSARLFTADPVETIIYRRAGSSLAIAEPTS 150

Query: 253 DPV------------------LALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLL 291
            P                    A A R   + ++    R   ++  +LT L  RGV  LL
Sbjct: 151 SPEPTSSPEPSTPQSAPAAIRTAPATRAARVILVELPGRPRVEVAAILTDLARRGVRRLL 210

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFG 347
           VEGG ++  +F+ + LVD + L  +   +GE   P+ +  G    +              
Sbjct: 211 VEGGTSLHTAFLTAGLVDELHLTVAPFFVGERDAPTFVGPGVFPNDVHSPLRLAEVRQLD 270

Query: 348 SDVCLEYIGK 357
             V L Y+  
Sbjct: 271 DVVFLRYLAP 280


>gi|299142094|ref|ZP_07035228.1| riboflavin biosynthesis protein RibD [Prevotella oris C735]
 gi|298576556|gb|EFI48428.1| riboflavin biosynthesis protein RibD [Prevotella oris C735]
          Length = 122

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 46/119 (38%), Positives = 58/119 (48%), Gaps = 4/119 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M   L+ +         NP V  +IV    +IG G     G  HAEV A      E 
Sbjct: 4   EYYMKRCLQLAENGRQNAKPNPMVGAVIVAHDRIIGEGYHVRCGEGHAEVNAFASVRPED 63

Query: 68  R----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                 AT YV+LEPCSHYG++PPCA  II  GI+R V    DP  +V GRG+Q +   
Sbjct: 64  EKLLPEATIYVSLEPCSHYGKTPPCADLIISKGIKRCVCGCVDPFAKVQGRGIQRMRDA 122


>gi|15646114|ref|NP_208296.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori 26695]
 gi|2314679|gb|AAD08541.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori 26695]
          Length = 344

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 79/364 (21%), Positives = 133/364 (36%), Gaps = 77/364 (21%)

Query: 12  SAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR-- 68
              L  +  H  L   NPSVAC ++ K+  ++          PHAEV A + A +  R  
Sbjct: 9   EMCLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRPS 68

Query: 69  ---------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                                           +TLEPC+ YG++P C++ +     +RVV
Sbjct: 69  LKNDLEKLEDPKTLSDFLKTHHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVV 128

Query: 102 VCVDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
           +  ++ + +  G   LQ    + II   +      + L   +  Q  + +   L + ++ 
Sbjct: 129 IATEENEAKKGGLARLQKARIETIICHNLENKAKDLLLPFRVMEQKGRFNLFKLALRMNG 188

Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHS 218
           D   G        ITG  S    H  RA  D ++V   T+  D+P L  R      Q  +
Sbjct: 189 DYHHG-------KITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNKN 241

Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
           P   IL     +  +SK+      AP  +V    DP                  +DL   
Sbjct: 242 PNIAILSKR-SIDPNSKVFS----APNRLVNTFHDP------------------KDLP-- 276

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYL 334
               + +G     +EGG  +  S  +   +D+++L+    +IGE      + +P +   L
Sbjct: 277 ----LEKGFN--FIEGGWELFESLRDK--IDALLLHSHASMIGEAFKALALKTPFKGRLL 328

Query: 335 EKNF 338
               
Sbjct: 329 HAQI 332


>gi|229589688|ref|YP_002871807.1| putative riboflavin biosynthesis deaminase [Pseudomonas fluorescens
           SBW25]
 gi|229361554|emb|CAY48431.1| putative riboflavin biosynthesis deaminase [Pseudomonas fluorescens
           SBW25]
          Length = 156

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 54/142 (38%), Positives = 75/142 (52%), Gaps = 1/142 (0%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           MP +  +  FM  AL   R  +     NP V C++V+D +VI +G T   G  HAE  AL
Sbjct: 1   MPNTLSNTDFMQLALAQGRLALPECLPNPPVGCVLVQDNMVISQGYTQAPGFHHAEAMAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                E    TA+VTLEPCS +GR+P CA  +I  G+  V V + DPD R SG G++ L 
Sbjct: 61  SRLTNECSAVTAFVTLEPCSFHGRTPSCALALINSGVETVFVGLLDPDPRNSGAGIRMLR 120

Query: 121 QKGI-IVDRMMESEGKIFLHAY 141
             GI ++  ++  E    L  +
Sbjct: 121 DAGITVIVGLLAEETAEDLADF 142


>gi|82791814|gb|ABB90836.1| putative bifunctional enzyme deaminase/reductase [Streptomyces
           davawensis]
          Length = 375

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 53/219 (24%), Positives = 86/219 (39%), Gaps = 11/219 (5%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
               ++ L  AVS D  +   G   + ++     ++V  +RA  DAILVG GT+ AD+P 
Sbjct: 1   MPLPYVLLSAAVSLDGYLDDTGPERLLLSSPADFDRVDEVRASVDAILVGAGTIRADNPR 60

Query: 207 L--------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           L          R+       P+++ +     L   +K   T     V+  T+        
Sbjct: 61  LLVNSPERRAARVAAGHPEYPLKVTVSGSGDLDPAAKFWHTGGE-KVVYTTDKGARTARA 119

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
           A    ++  +  D  D ++LLT L  RGV  L+VEGG  +    +   L D + L  + +
Sbjct: 120 AGLAADVVALGAD-LDWRRLLTDLHARGVHRLMVEGGGTIHTQLLQEGLADELQLVLAPL 178

Query: 319 VIGEGGIPSPLEEG-YLEKNFMCVRRDYFGSDVCLEYIG 356
            +G+   P     G Y       V        V + Y  
Sbjct: 179 FVGDPSAPRLFGPGAYQAGRLRLVESRRIQDVVLMRYEP 217



 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 9/141 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--HAEVQAL 60
           ++ D  ++  A   +      + T  SV  ++V  DG  + RG +  G  P  HAE  AL
Sbjct: 227 AAADHHWLRLACELAEL-CPPSETAFSVGAVVVAADGTELARGHSREGTDPVVHAEEAAL 285

Query: 61  EEAGE---EARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVR-VSGRG 115
            +          AT Y +LEPC+H    P PCA+ I++ G+RRVV    +PD   V+  G
Sbjct: 286 AKIDPEDPRLPSATVYSSLEPCAHRSSRPAPCARLILDAGVRRVVTAWREPDTFVVAADG 345

Query: 116 LQWLSQKGIIVDRMMESEGKI 136
              L+  G+ V  + E   + 
Sbjct: 346 TGLLTAAGVDVLELPEYADRA 366


>gi|56459161|ref|YP_154442.1| riboflavin-specific deaminase [Idiomarina loihiensis L2TR]
 gi|56178171|gb|AAV80893.1| Riboflavin-specific deaminase [Idiomarina loihiensis L2TR]
          Length = 141

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 52/126 (41%), Positives = 76/126 (60%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
            +FM  AL  S+  +     NP V C++VKDG VI +G T   G  HAEV+AL     + 
Sbjct: 3   EKFMLEALNISKQALPHCEPNPPVGCVLVKDGEVISKGFTQAIGGSHAEVEALNAHSGDL 62

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            G TAYVTLEPCS  GR+  CA  ++  GI+ V++ + DPD+R +G+G + L+  G+ V+
Sbjct: 63  SGVTAYVTLEPCSFVGRTAACASTLLASGIKHVIIAMLDPDIRNNGKGAEILTAGGVKVE 122

Query: 128 RMMESE 133
             + +E
Sbjct: 123 VGLCAE 128


>gi|126275980|ref|XP_001387170.1| predicted protein [Scheffersomyces stipitis CBS 6054]
 gi|126213039|gb|EAZ63147.1| predicted protein [Pichia stipitis CBS 6054]
          Length = 265

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 66/199 (33%), Positives = 94/199 (47%), Gaps = 18/199 (9%)

Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
           Q +KR  +TL  A S D+ I         I+   +K   H LR++ DAI+V IGTV ADD
Sbjct: 37  QHQKRPFVTLTYAQSLDSRIAAKKGTQTKISHLETKTMTHYLRSKHDAIMVAIGTVQADD 96

Query: 205 PELTCRL-NGLQEHSPMRIILDPHFKL-----SLDSKIIKTALLAPVIIVTENDDP--VL 256
           P+L CR      +HSP  +ILDPH K       L +        AP II+ EN  P    
Sbjct: 97  PKLNCRYREDGNDHSPRPVILDPHGKWNYSESQLRAICDNKQGKAPYIIIEENVKPKQED 156

Query: 257 ALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI-----NSR 306
               +++N   IY         +   +L  L   GV S+++EGGA V +  +        
Sbjct: 157 IEILQEQNGLFIYLPLSTDHSANWDLILQKLHDLGVESIMIEGGAMVINELLDFHRTQHD 216

Query: 307 LVDSIILYRSQIVIGEGGI 325
           L+DS+I+    I +G  G+
Sbjct: 217 LIDSLIITVGPIFLGSQGV 235


>gi|88602100|ref|YP_502278.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanospirillum
           hungatei JF-1]
 gi|88187562|gb|ABD40559.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanospirillum
           hungatei JF-1]
          Length = 226

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 96/225 (42%), Gaps = 15/225 (6%)

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIG 198
                 R ++TL   V+ D  + +    S  +        ++  +H +RA SDAI+VG  
Sbjct: 1   MSDHINRPYVTLVSEVTIDGKLTVTRGASSKLLMQFMSHEAEVLLHQIRADSDAIMVGAN 60

Query: 199 TVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL-- 256
           T+  D+  LT R   ++  +P+R+I      +S D+ ++       +I V+   D     
Sbjct: 61  TIRIDNSFLTVR--HVEGKNPIRVIPSSKADISPDANVLS-PDAPTIIAVSARADKETCT 117

Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
            LA +   I I   +  DL  L+ +L  +  V SL++EGG+ +  +     L+D ++L  
Sbjct: 118 ILAEKGAYIEICGDEFVDLPILMRLLFEKYSVQSLMIEGGSTLNGNMFQKGLIDELLLIH 177

Query: 316 SQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-----GSDVCLEYI 355
              + G    PS +   +       ++ D       G ++  ++ 
Sbjct: 178 LPFIAGGEDTPSLVTGLHPRDVSDLLKLDLITHFMAGENLITKWR 222


>gi|329938811|ref|ZP_08288207.1| riboflavin/cytosine deaminase [Streptomyces griseoaurantiacus M045]
 gi|329302302|gb|EGG46194.1| riboflavin/cytosine deaminase [Streptomyces griseoaurantiacus M045]
          Length = 379

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 85/220 (38%), Gaps = 11/220 (5%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
               H+ L  AVS D  +   G   + ++G    ++V  +RA+SDAIL+G GT+  D+P 
Sbjct: 1   MPHPHVLLSAAVSLDGFLDDTGPDRLLLSGPEDFDRVDQVRAESDAILIGAGTLRTDNPR 60

Query: 207 LTCRLNGLQEHS--------PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           L       +           P+++ +     L   ++   T   A  +  TE   P L  
Sbjct: 61  LLVNSPERRAKRVAAGLPEYPLKVTVSASGDLDPAARFWHTGG-AKAVYTTEEAAPRLRA 119

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
           A       +        +++L  L   + V  L+VEGG  V    +   L D + L  + 
Sbjct: 120 ALPPDVDVVAPGAELRWREVLAHLGEEKDVRRLMVEGGGRVHTELLRQGLADELQLVVAP 179

Query: 318 IVIGEGGIPSPLE-EGYLEKNFMCVRRDYFGSDVCLEYIG 356
           +++GE   P       Y       +     G  V + Y+ 
Sbjct: 180 LLVGEADAPRMFGTAAYPPGRMRLLETRAVGDVVLMRYVP 219



 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/127 (35%), Positives = 63/127 (49%), Gaps = 8/127 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--HAEVQAL 60
           ++ D R++  A   +      + T  SV  ++V  DG  + RG +  GG P  HAE  AL
Sbjct: 229 TAADRRWLGLACDLAER-CPPSETAFSVGAVVVAADGTELARGFSREGGDPAVHAEEAAL 287

Query: 61  EE-AGEEAR--GATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            + A  +AR  GAT Y +LEPC+     P PCA+ I+  G RRVV    +PD  V G   
Sbjct: 288 AKVAPGDARLAGATVYSSLEPCARRASRPVPCARLILAAGARRVVTAWREPDTFVPGADG 347

Query: 117 QWLSQKG 123
             +   G
Sbjct: 348 TGVLTAG 354


>gi|149202756|ref|ZP_01879728.1| bifunctional deaminase-reductase-like protein [Roseovarius sp.
           TM1035]
 gi|149144038|gb|EDM32072.1| bifunctional deaminase-reductase-like protein [Roseovarius sp.
           TM1035]
          Length = 272

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 92/228 (40%), Gaps = 14/228 (6%)

Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
           E                  +  +I  S D  +      +  ++G      +H +RA  DA
Sbjct: 33  ERAAMALYGSMMAAPGTPQVVAQIGQSLDGRVATVTGDAADVSGPDGLAHLHRMRALVDA 92

Query: 193 ILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252
           ++VG+ T L D+P LT RL  +   +P R+++DP  +L  D+++        ++I     
Sbjct: 93  VIVGVKTALHDNPRLTVRL--VSGQNPARVVIDPSGRLPNDARLFAEDGTRRIVI----- 145

Query: 253 DPVLALAFRKKNINIIYCDCRDL---KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
                   R   + +I     D      +++ L   G+  L+VEGGA     FI + L+ 
Sbjct: 146 --QEVDKPRPAGVEVIQLPRSDWISPPAIVSALRKVGLHHLMVEGGAITIARFIEADLLA 203

Query: 310 SIILYRSQIVIGEG--GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
            + +  + ++IG G  G+ +       +      +    G+DV  + +
Sbjct: 204 RLHVAVAPLLIGAGPQGLTTRPVARLAQARRPETQVYGLGTDVLFDCV 251


>gi|289807868|ref|ZP_06538497.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 111

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 49/108 (45%), Positives = 67/108 (62%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  AG 
Sbjct: 2   QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  +  P+     
Sbjct: 62  KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMHGPEPTGRP 109


>gi|315505529|ref|YP_004084416.1| bifunctional deaminase-reductase domain protein [Micromonospora sp.
           L5]
 gi|315412148|gb|ADU10265.1| bifunctional deaminase-reductase domain protein [Micromonospora sp.
           L5]
          Length = 229

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 87/227 (38%), Gaps = 12/227 (5%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           +  R ++ L  A+S D  I  A    + ++     ++V   RA  DAI+VG  TV  DDP
Sbjct: 1   MTTRPYVLLSCAMSIDGYIDDATTERLLLSNDDDLDRVDATRAGCDAIMVGAATVRRDDP 60

Query: 206 ELTCRLNGLQ--------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
            L  R    +          SP+++ +     L   ++         ++           
Sbjct: 61  RLLVRSERRRAERVARGLPPSPVKVTVTGSGDLDPQARFFTAGDGLKLVYCPSGVVDKAR 120

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
                 +  +   D    + ++  L GRGV  L+VEGG +V   F+ + L D + L  + 
Sbjct: 121 EQVGGVSTVVDAGDPATPEAVVADLAGRGVARLMVEGGGSVHRQFLTAGLADELHLVVAP 180

Query: 318 IVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYIGKNLC 360
             +G+G  P  + +G+      +    V     G  V   Y   + C
Sbjct: 181 FFVGDGRAPRFVGDGHFPWHPGRRARVVEVRQIGDVVLTRYALSDRC 227


>gi|302868074|ref|YP_003836711.1| bifunctional deaminase-reductase domain-containing protein
           [Micromonospora aurantiaca ATCC 27029]
 gi|302570933|gb|ADL47135.1| bifunctional deaminase-reductase domain protein [Micromonospora
           aurantiaca ATCC 27029]
          Length = 229

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 87/227 (38%), Gaps = 12/227 (5%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           +  R ++ L  A+S D  I  A    + ++     ++V   RA  DAI+VG  TV  DDP
Sbjct: 1   MTTRPYVLLSCAMSIDGYIDDATTERLLLSNDDDLDRVDATRAGCDAIMVGAATVRRDDP 60

Query: 206 ELTCRLNGLQ--------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
            L  R    +          SP+++ +     L   ++         ++           
Sbjct: 61  RLLVRSERRRAERVARGLPPSPVKVTVTGSGDLDPQARFFTAGDGLKLVYCPSGVVDKAR 120

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
                 +  +   D    + ++  L GRGV  L+VEGG +V   F+ + L D + L  + 
Sbjct: 121 EQVGAVSTVVDAGDPATPEAVVADLAGRGVARLMVEGGGSVHRQFLTAGLADELHLVVAP 180

Query: 318 IVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYIGKNLC 360
             +G+G  P  + +G+      +    V     G  V   Y   + C
Sbjct: 181 FFVGDGRAPRFVGDGHFPWHPGRRARVVEVRQIGDVVLTRYALSDRC 227


>gi|116331682|ref|YP_801400.1| pyrimidine deaminase, riboflavin biosynthesis [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116125371|gb|ABJ76642.1| Pyrimidine deaminase, riboflavin biosynthesis [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 432

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/219 (29%), Positives = 106/219 (48%), Gaps = 8/219 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLI--VKDGIVIGRGVTAYGGCPHAEVQA- 59
           ++     F     + S    G +S NP V+CLI  V +  ++ +G T+  G PHAE  A 
Sbjct: 1   MTLLPEEFREELRKLSFLSTGESSPNPPVSCLITDVDNARILAKGRTSPTGGPHAERNAY 60

Query: 60  --LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG-L 116
               + G        +VTLEPC+H G++PPC   I+E   + +     DP+  V     L
Sbjct: 61  YEFVKNGFFKEPHNVWVTLEPCTHSGKTPPCLDLILEHKPKTLYYGRKDPNPLVRENEGL 120

Query: 117 QWLSQKGI--IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
           +   ++GI  + +  +    +  L  +++R   K+  + LK A+S++          V  
Sbjct: 121 ELCRRRGILVVAEPGLREIAEESLFGFVSRIERKKPSMILKTALSKEGFFSKRDKFPVRF 180

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213
           +G IS +   +LRA+ DA+LVG GT+  D+P L  R+  
Sbjct: 181 SGNISNHLTSILRAKCDAVLVGPGTLFHDNPGLEFRIGE 219


>gi|300788900|ref|YP_003769191.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Amycolatopsis
           mediterranei U32]
 gi|299798414|gb|ADJ48789.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Amycolatopsis
           mediterranei U32]
          Length = 363

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 86/218 (39%), Gaps = 13/218 (5%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           +  R H+ L  A S D  +       + ++       V  LRA++DAI VG GTV AD+P
Sbjct: 1   MISRPHVLLSAAQSLDGYLDDTSPERLVLSTEDDFAVVDRLRAEADAIFVGAGTVRADNP 60

Query: 206 ELTCRLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
            L  R   L+           P+++ +     L  D++         ++       P  A
Sbjct: 61  RLLVRSPELRRKRLEQGKSEQPVKVTVTTRG-LDPDAQFFTVGDTEKIVYA----PPGAA 115

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
            A +     +   +  D  ++L  L  RG+ +LLVEGG  +   F+   L D + L  + 
Sbjct: 116 DALKHVATVVDAGNPPDFGRVLDDLGARGIENLLVEGGGGIHTRFLTEGLADELRLAIAP 175

Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
             +G+   P  +  G   +  +    +       LEY 
Sbjct: 176 FFVGQPDAPRFVGPGLYPRPLVLTAANELQGMAVLEYR 213



 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/126 (34%), Positives = 60/126 (47%), Gaps = 9/126 (7%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--HAEVQAL 60
           +  D + +  A+  +       +    V  +I   DG V+  G  +  G P  HAE  AL
Sbjct: 219 TGRDVQRLKEAIALAAECPPSHT--FRVGAVITDADGEVVATG-HSGEGDPGNHAEEAAL 275

Query: 61  EEAGEEAR--GATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            + G + R  GAT Y +LEPCSH    P  C Q I++ GI RVV    +P V V  RG +
Sbjct: 276 AKCGGDPRLAGATMYSSLEPCSHRSSHPRSCTQLILDAGIPRVVFAWREPPVFVDARGTE 335

Query: 118 WLSQKG 123
            L Q G
Sbjct: 336 LLRQAG 341


>gi|75761016|ref|ZP_00741019.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|74491502|gb|EAO54715.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase  /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
          Length = 148

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/92 (43%), Positives = 54/92 (58%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D  +M  AL+ +    G TS NP V  ++VKDG ++G G     G  HAEV AL+ A + 
Sbjct: 55  DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMASQN 114

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
           A+ AT YVTLEPCSH+G+       +IE G+ 
Sbjct: 115 AKDATVYVTLEPCSHFGKHHLVVNXLIEKGVS 146


>gi|312194017|ref|YP_004014078.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c]
 gi|311225353|gb|ADP78208.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c]
          Length = 235

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 83/226 (36%), Gaps = 18/226 (7%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             R ++ L  A S D  I  A    + ++     ++V  +RA  DAILVG GT+ ADDP+
Sbjct: 1   MTRPYVVLSCATSIDGYIDDASETRLRLSNEADFDRVDEVRAGCDAILVGAGTIRADDPK 60

Query: 207 LTCRLNGLQ--------EHSPMRIILDPHFKLSLDSKIIK------TALLAPVIIVTEND 252
           L  R    +           P+++ L     L   ++         T     V+    + 
Sbjct: 61  LLIRSPARRRARMSRGLPSHPLKVTLTATGDLDPSARFFTAGDPDGTDGAGQVVYTATDA 120

Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
                         +   D  DL  +L  L  RGV  LLVEGG AV   F+   L D + 
Sbjct: 121 AARARARLGAVATVVEAGDPIDLPTVLADLATRGVARLLVEGGGAVHTQFLTEDLADELH 180

Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEY 354
           L  +   +G+   P  +  G    +             G  V L Y
Sbjct: 181 LVVAPFFVGDPRAPRFVGPGTFPHDPTHPARLAETTQLGDVVLLRY 226


>gi|167043956|gb|ABZ08643.1| putative RibD C-terminal domain protein [uncultured marine
           crenarchaeote HF4000_APKG3J11]
          Length = 217

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 98/213 (46%), Gaps = 11/213 (5%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             +    A++ D  +      S  ++    K +VH LR++ DAIL+G  TV  DDP L+ 
Sbjct: 6   PRVIFSAAITLDGKLATRSGDSK-LSSKKDKIRVHKLRSKVDAILIGKNTVKIDDPLLSV 64

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII-VTENDDPVLALAFRKKNINII 268
               +++ +P+RIILD +  +   S+I+KT    P II V++           K  + +I
Sbjct: 65  H--NIKKKNPIRIILDSNATIRSSSRILKTCSKIPTIIAVSKKAQKKNLQKLEKFPVQVI 122

Query: 269 YC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            C  D   +KKLL IL  +G+ ++LVEGG     +F+   LVD  I+  +  ++G     
Sbjct: 123 VCGNDTVSIKKLLGILKKKGIKNILVEGGGTANWAFVKENLVDEAIITITPYLVGGMTAT 182

Query: 327 SPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354
           + ++                      ++V L Y
Sbjct: 183 TLVDGDGFSTIAKSIRLKLKSVSKIKNEVILRY 215


>gi|217076038|gb|ACJ86378.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase [Leuconostoc
           mesenteroides]
          Length = 135

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/133 (36%), Positives = 65/133 (48%), Gaps = 3/133 (2%)

Query: 7   DARFMSAALRFSRWHV-GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D  +M  A   +   +   T  NP    +IVKDG VI  G     G  HAE+ A      
Sbjct: 3   DLTWMKLAADEAIRAMPYQTFENPRGGAVIVKDGQVITTGYHEKFGEAHAEINAFNRVKN 62

Query: 66  EAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           +    GAT YVTLEPCS +G+   CA  I   G++RVVV   DP+   + +G++ L   G
Sbjct: 63  KTEFLGATLYVTLEPCSTHGKVGSCAVQIQNWGLKRVVVGSIDPNPSTNAKGIKMLGSPG 122

Query: 124 IIVDRMMESEGKI 136
           I VD +   E K 
Sbjct: 123 ISVDVLNTYENKE 135


>gi|227826855|ref|YP_002828634.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
           islandicus M.14.25]
 gi|227829432|ref|YP_002831211.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
           islandicus L.S.2.15]
 gi|229578215|ref|YP_002836613.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
           islandicus Y.G.57.14]
 gi|229583070|ref|YP_002841469.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
           islandicus Y.N.15.51]
 gi|229584037|ref|YP_002842538.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
           islandicus M.16.27]
 gi|284996814|ref|YP_003418581.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Sulfolobus islandicus L.D.8.5]
 gi|227455879|gb|ACP34566.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Sulfolobus islandicus L.S.2.15]
 gi|227458650|gb|ACP37336.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
           pyrimidine1-reductase [Sulfolobus islandicus M.14.25]
 gi|228008929|gb|ACP44691.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Sulfolobus islandicus Y.G.57.14]
 gi|228013786|gb|ACP49547.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
           pyrimidine1-reductase [Sulfolobus islandicus Y.N.15.51]
 gi|228019086|gb|ACP54493.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Sulfolobus islandicus M.16.27]
 gi|284444709|gb|ADB86211.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
           1-reductase [Sulfolobus islandicus L.D.8.5]
 gi|323473972|gb|ADX84578.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
           pyrimidine1-reductase [Sulfolobus islandicus REY15A]
 gi|323476967|gb|ADX82205.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
           pyrimidine1-reductase [Sulfolobus islandicus HVE10/4]
          Length = 211

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 79/188 (42%), Gaps = 6/188 (3%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++ +   +S D  +         ++    K + H +R++ DA++VG  TV  D+P LT 
Sbjct: 3   PYVIIFSTLSIDGRLATKTG-YSELSCPYDKQRQHEIRSEVDAVMVGANTVRVDNPSLTV 61

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
           + +     +P+R+++   F L    KI  T      I+ T N +      F +K + +  
Sbjct: 62  KYS-KNRRNPIRVVVTRSFNLDPSYKIFTTPPS--TIVYTSNYESEKVEEFNRKGVIVRK 118

Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
               D            V  L+VEGG  +   FI   L D I +  S  + G  G+    
Sbjct: 119 FLHLDDLLEDLY-NSFNVKRLMVEGGGHLIWWFIRDNLYDEIRITISPRIFG-NGVSFAQ 176

Query: 330 EEGYLEKN 337
            +G++ ++
Sbjct: 177 GDGFIGED 184


>gi|256786427|ref|ZP_05524858.1| bifunctional enzyme deaminase/reductase [Streptomyces lividans
           TK24]
 gi|289770318|ref|ZP_06529696.1| bifunctional enzyme deaminase/reductase [Streptomyces lividans
           TK24]
 gi|289700517|gb|EFD67946.1| bifunctional enzyme deaminase/reductase [Streptomyces lividans
           TK24]
          Length = 376

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 86/220 (39%), Gaps = 12/220 (5%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
               H+ L  AVS D  +   G   + ++     ++V  +RA  DAILVG GTV AD+P 
Sbjct: 1   MPLPHVLLSAAVSLDGYLDDTGPERLLLSSPADFDRVDGVRASVDAILVGGGTVRADNPR 60

Query: 207 L--------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           L          R+   +   P+++ +    +L   ++   T      +++T +D    A 
Sbjct: 61  LLVNSAERRAARVADGRAEYPLKVTVSGSGELDPAARFWHTGGDK--VLLTTDDGARRAR 118

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
           A       +      D +  L  L  R GV  L+VEGG  V    +   L D + L  + 
Sbjct: 119 ALGIGADVVSLGADLDWRAALEYLHDRRGVRRLMVEGGGTVHTQLLQQGLADELQLVLAP 178

Query: 318 IVIGEGGIPSPLEEG-YLEKNFMCVRRDYFGSDVCLEYIG 356
           + +G+   P     G Y       V        V + Y+ 
Sbjct: 179 LFVGDPAAPRLFGPGAYQGGRLRLVETRRIEDVVLMRYLP 218



 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 8/118 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--HAEVQA 59
           V++ D  +++ A   +      + T  SV  ++V  DG  + RG +  GG P  HAE  A
Sbjct: 227 VAAADRHWLALACELAEL-CPPSDTAFSVGAVVVAADGSELARGHSREGGDPVVHAEEAA 285

Query: 60  LEEAGE---EARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSG 113
           L +         GAT Y +LEPC+     P PCA+ I++ G+RRVV    +PD  V+G
Sbjct: 286 LAKVDPEDPRLPGATVYSSLEPCARRASRPAPCARLILDAGVRRVVTAWREPDTFVAG 343


>gi|21222507|ref|NP_628286.1| bifunctional enzyme deaminase/reductase [Streptomyces coelicolor
           A3(2)]
 gi|5918510|emb|CAB56387.1| putative bifunctional enzyme deaminase/reductase [Streptomyces
           coelicolor A3(2)]
          Length = 376

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 86/220 (39%), Gaps = 12/220 (5%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
               H+ L  AVS D  +   G   + ++     ++V  +RA  DAILVG GTV AD+P 
Sbjct: 1   MPLPHVLLSAAVSLDGYLDDTGPERLLLSSPADFDRVDGVRASVDAILVGGGTVRADNPR 60

Query: 207 L--------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           L          R+   +   P+++ +    +L   ++   T      +++T +D    A 
Sbjct: 61  LLVNSAERRAARVADGRAEYPLKVTVSGSGELDPAARFWHTGGDK--VLLTTDDGARRAR 118

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
           A       +      D +  L  L  R GV  L+VEGG  V    +   L D + L  + 
Sbjct: 119 ALGIGADVVSLGADLDWRAALEYLHDRRGVRRLMVEGGGTVHTQLLQQGLADELQLVLAP 178

Query: 318 IVIGEGGIPSPLEEG-YLEKNFMCVRRDYFGSDVCLEYIG 356
           + +G+   P     G Y       V        V + Y+ 
Sbjct: 179 LFVGDPAAPRLFGPGAYQGGRLRLVETRRIEDVVLMRYLP 218



 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 8/118 (6%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--HAEVQA 59
           V++ D  +++ A   +      + T  SV  ++V  DG  + RG +  GG P  HAE  A
Sbjct: 227 VAAADRHWLALACELAEL-CPPSDTAFSVGAVVVAADGSELARGHSREGGDPVVHAEEAA 285

Query: 60  LEEAGE---EARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSG 113
           L +         GAT Y +LEPC+     P PCA+ I++ G+RRVV    +PD  V+G
Sbjct: 286 LAKVDPEDPRLPGATVYSSLEPCARRASRPAPCARLILDAGVRRVVTAWREPDTFVAG 343


>gi|239930347|ref|ZP_04687300.1| riboflavin/cytosine deaminase [Streptomyces ghanaensis ATCC 14672]
 gi|291438692|ref|ZP_06578082.1| bifunctional enzyme deaminase/reductase [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341587|gb|EFE68543.1| bifunctional enzyme deaminase/reductase [Streptomyces ghanaensis
           ATCC 14672]
          Length = 377

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 87/220 (39%), Gaps = 12/220 (5%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
               ++ L  AVS D  +   G   + ++G    ++V  +RA  DAILVG GT+ AD+P 
Sbjct: 1   MPHPYVLLSAAVSLDGYLDDTGPERLLLSGPADFDRVDEVRASVDAILVGAGTIRADNPR 60

Query: 207 LTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           L          R+   +   P+++ +     L   ++   T      ++ T +     A 
Sbjct: 61  LLVNSPERRADRVARGRPEYPLKVTVSGSGDLDPAARFWHTGGEK--VLYTTDRGAERAR 118

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
           A       +      D ++LL  L   RGV  L+VEGG  V    +   L D + L  + 
Sbjct: 119 AHGLAADVVPLGPELDWRRLLEHLHAVRGVRRLMVEGGGLVHTQLLTQGLADELQLVLAP 178

Query: 318 IVIGEGGIPSPLEEG-YLEKNFMCVRRDYFGSDVCLEYIG 356
           +++G+   P     G Y       +     G  V + Y  
Sbjct: 179 LLVGDPDAPRLFGPGSYQGGRLRLLETRAVGDVVLMRYEP 218



 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/142 (32%), Positives = 65/142 (45%), Gaps = 9/142 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--HAEVQAL 60
           S+ D  +++ A   +      + T  SV  ++V  DG  + RG +  GG P  HAE  AL
Sbjct: 228 SAADHHWLALACDLAER-CPPSGTAFSVGAVVVAADGTELARGHSREGGDPVVHAEEAAL 286

Query: 61  EEAGE---EARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRV-SGRG 115
            +          AT Y +LEPC+     P PCA+ I++ GIRRVV    +PD  V    G
Sbjct: 287 AKTDPTDPRLATATVYSSLEPCARRASRPAPCARLILDAGIRRVVTAWREPDTFVPGADG 346

Query: 116 LQWLSQKGIIVDRMMESEGKIF 137
              L   G  V  + E E +  
Sbjct: 347 SGVLVDGGATVVVLPEHEERAQ 368


>gi|255728685|ref|XP_002549268.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candida
           tropicalis MYA-3404]
 gi|240133584|gb|EER33140.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candida
           tropicalis MYA-3404]
          Length = 247

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/192 (31%), Positives = 93/192 (48%), Gaps = 16/192 (8%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
            R  +TL  A S D+ I         ++   +K   H LR++ D+I +GIGTVLADDP+L
Sbjct: 26  NRPFVTLTYAQSLDSKIAAQPGQQTKLSHLETKTMTHYLRSKHDSIFIGIGTVLADDPKL 85

Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLD----SKIIKTA-LLAPVIIVTEN-----DDPVLA 257
            CR +      P  IILDP  +   +     KI      LAP II+ EN     D   + 
Sbjct: 86  NCRYDEKSTIRP--IILDPKAQWQYEKSTLCKICHDGLGLAPFIIIDENMNPSDDSRKIV 143

Query: 258 LAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI--NSRLVDSIIL 313
                K + +   + R  + K +L  L    + S+++EGGA V +  +     LVDS+I+
Sbjct: 144 ENQGGKYVKLPLLEKRNENWKLILEKLKELDIKSVMIEGGAKVINDLLINRDNLVDSLII 203

Query: 314 YRSQIVIGEGGI 325
             + + +G+ G+
Sbjct: 204 TVAPVFLGKNGV 215


>gi|238618991|ref|YP_002913816.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
           islandicus M.16.4]
 gi|238380060|gb|ACR41148.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
           pyrimidine1-reductase [Sulfolobus islandicus M.16.4]
          Length = 211

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 79/188 (42%), Gaps = 6/188 (3%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++ +   +S D  +         ++    K + H +R++ DA++VG  TV  D+P LT 
Sbjct: 3   PYVIIFSTLSIDGRLATKTG-YSELSCPYDKQRQHEIRSEVDAVMVGANTVRVDNPSLTV 61

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
           + +     +P+R+++   F L    KI  T      I+ T N +      F +K + +  
Sbjct: 62  KYS-KNRRNPIRVVVTRSFNLDPSYKIFTTPPS--TIVYTSNYESEKVEEFSRKGVIVRK 118

Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
               D            V  L+VEGG  +   FI   L D I +  S  + G  G+    
Sbjct: 119 FLHLDDLLEDLY-NSFNVKRLMVEGGGHLIWWFIRDNLYDEIRITISPRIFG-NGVSFAQ 176

Query: 330 EEGYLEKN 337
            +G++ ++
Sbjct: 177 GDGFIGED 184


>gi|320323039|gb|EFW79128.1| ribD C-terminal domain protein [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320329689|gb|EFW85678.1| ribD C-terminal domain protein [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330882190|gb|EGH16339.1| ribD C-terminal domain-containing protein [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 224

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 8/188 (4%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
             +T+   +S D  + M    S               +H  R + DAI+VG  T++ DDP
Sbjct: 1   MKVTVFSQISIDGKLTMGKGASSKPLFQNFDDDDMRFIHKFRGEVDAIMVGRNTIVTDDP 60

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
           +LT R       +P+RII      L   + I K+     +    +  D  +    R    
Sbjct: 61  QLTNRYE--SGRNPIRIIPTTSLDLPTSASIFKSPEKTIIATTEQARDHEMVKHIRACGK 118

Query: 266 NIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            +++   +  D  +L  +L  RG+  ++VEGG  +     N  LVD IIL +  I+IG  
Sbjct: 119 EVLFAGAKHVDFTRLFPMLEARGINHIMVEGGGHLNWQVFNLDLVDEIILMQVPIIIGGA 178

Query: 324 GIPSPLEE 331
              +  + 
Sbjct: 179 ATATLADG 186


>gi|50426769|ref|XP_461982.1| DEHA2G10010p [Debaryomyces hansenii CBS767]
 gi|54036250|sp|Q6BII9|RIB7_DEBHA RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|49657652|emb|CAG90452.1| DEHA2G10010p [Debaryomyces hansenii]
          Length = 247

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 17/206 (8%)

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
           FL  YL R    R  +TL  A S D+ I         I+   +K   H +R++ D I+VG
Sbjct: 13  FLEEYLPRPCSNRPFVTLTYAQSLDSRIAAKPGEQTKISHLETKTMTHYIRSKHDGIMVG 72

Query: 197 IGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKT-----ALLAPVIIVT 249
           IGTVLADDP+L CR      +  +P  IILDP  K +     +++       LAP I++ 
Sbjct: 73  IGTVLADDPKLNCRFEAEDGNISTPRPIILDPTGKWAYHKSQLRSVCDNNKGLAPFILID 132

Query: 250 E-----NDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300
           E     N+D  +        + +      D       +L  L   G+ S++VEGGA++ +
Sbjct: 133 ETVTPRNEDVEVLDKQDGAFVRLPLLRNADKVGNWNIILKKLFQLGIKSIMVEGGASIIN 192

Query: 301 SFI-NSRLVDSIILYRSQIVIGEGGI 325
             +  S+++DS+I+    + +G+ G+
Sbjct: 193 DLLVYSKIIDSLIITIGPVFLGKDGV 218


>gi|317178213|dbj|BAJ56002.1| riboflavin biosynthesis protein [Helicobacter pylori F16]
          Length = 344

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 76/362 (20%), Positives = 133/362 (36%), Gaps = 77/362 (21%)

Query: 14  ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR---- 68
            L  +  H  L   NPSVAC ++ K+  ++          PHAEV A + A +  R    
Sbjct: 11  CLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPSLK 70

Query: 69  -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                         +TLEPC+ YG++P C+  +     +RVV+ 
Sbjct: 71  NDLEKLEDPKTLSDFLKTHHDSAFKDCVFLITLEPCNSYGKTPACSGLLEVLKPKRVVIA 130

Query: 104 VDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            ++ + +  G   LQ    +G++ + +      + L      Q  + +   L + ++ D 
Sbjct: 131 TEENEAKKGGLARLQKARIEGVVCESLENKAKDLLLPFRTMEQKGRFNLFKLALRMNGDY 190

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPM 220
             G        ITG  S    H  RA  D ++V   T+  D+P L  R      Q  +P 
Sbjct: 191 YHG-------KITGQKSVIFTHNQRAVCDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPN 243

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
             IL  H  +  +SK+                          + +N+ Y D +DL     
Sbjct: 244 IAILSKH-SIDPNSKVFSAPN---------------------RLVNVFY-DPKDLP---- 276

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEK 336
             + +G     +EGG  +  S  +   +D+++L+    +I E      + +P +   L  
Sbjct: 277 --LEKGFN--FIEGGWELFESLRDK--IDALLLHSHASMISEAFNTIALKAPFKGRLLHA 330

Query: 337 NF 338
             
Sbjct: 331 QI 332


>gi|55859444|emb|CAH17653.1| HTP reductase [Debaryomyces hansenii]
          Length = 262

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 95/206 (46%), Gaps = 17/206 (8%)

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
           FL  YL R    +  +TL  A S D+ I         I+   +K   H +R++ D I+VG
Sbjct: 28  FLEDYLPRPGSNKPFVTLTYAQSLDSRIAAKPGEQTKISHLETKTMTHYIRSKHDGIMVG 87

Query: 197 IGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKII-----KTALLAPVI--- 246
           IGTVLADDP+L CR      H  +P  +ILDP  K   +   +         LAP I   
Sbjct: 88  IGTVLADDPKLNCRFEADDGHISTPRPVILDPTGKWVYNKSQLRSVCDDNKGLAPFILID 147

Query: 247 --IVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAH 300
             +   N+D  +        + +          + K +L  L   G+ S+++EGGA++ +
Sbjct: 148 DTVTPSNEDIEVIEKQGGAFVKLPLLSSSNRIDNWKVILAKLFELGIKSIMIEGGASIIN 207

Query: 301 SFINSR-LVDSIILYRSQIVIGEGGI 325
             +    +VDS+I+    + +G+ G+
Sbjct: 208 DLLIYNEVVDSLIITIGPVFLGKDGV 233


>gi|183220072|ref|YP_001838068.1| putative riboflavin biosynthesis protein RibD [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910192|ref|YP_001961747.1| pyrimidine reductase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167774868|gb|ABZ93169.1| Pyrimidine reductase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167778494|gb|ABZ96792.1| Putative riboflavin biosynthesis protein RibD:Riboflavin-specific
           deaminase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 213

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/211 (24%), Positives = 102/211 (48%), Gaps = 7/211 (3%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             +++ +A++ D  +         +T    K Q+ + R+QSDA+L+G  ++L D+P +  
Sbjct: 1   MKLSINMAMTLDGKVVRPDGRWYGLTSSEDKTQMDVYRSQSDAVLIGKNSILNDNPIVKI 60

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR-KKNINII 268
           R       +P  +IL     L  D  + + +   P+II T+++   +  +   K  I  +
Sbjct: 61  R-AVPNALNPRPVILVRKGTLPPDKHVFEESDHIPLIICTKSNLKEIKTSLENKAEIFAL 119

Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
             D  D KK+  IL  +G  ++L+EGG  +  SF+ + LVD I +     +IG+ G+   
Sbjct: 120 DSDDIDPKKVTGILKRKGYKNVLLEGGPKLNFSFLEADLVDRIYITVVPYIIGKTGLAGI 179

Query: 329 LEE-----GYLEKNFMCVRRDYFGSDVCLEY 354
            +      G+ ++N+   +    G+++ L Y
Sbjct: 180 ADRNSELPGFDKQNWTLKQHFTKGNEIFLVY 210


>gi|261840180|gb|ACX99945.1| riboflavin biosynthesis protein RibD [Helicobacter pylori 52]
          Length = 344

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 77/362 (21%), Positives = 132/362 (36%), Gaps = 77/362 (21%)

Query: 14  ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63
            L  +  H  L   NPSVAC ++ K+  ++          PHAEV A + A         
Sbjct: 11  CLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPSLK 70

Query: 64  --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                   +     +TLEPC+ YG++P C+  +     +RVV+ 
Sbjct: 71  NDLEKLEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIA 130

Query: 104 VDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            ++ + +  G   LQ     G++ + +      + L   +  Q  + +   L + ++ D 
Sbjct: 131 TEENEAKKGGLARLQKARIDGVVCESLENKAKDLLLPFRIMEQKGRFNLFKLALRMNGDY 190

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPM 220
             G        ITG  S    H  RA  D ++V   T+  D+P L  R      Q  +P 
Sbjct: 191 CHG-------KITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPN 243

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
             IL  H  +  +SK+      AP  +V    DP                  +DL     
Sbjct: 244 IAILSKHP-IDPNSKVFS----APNRLVNAFYDP------------------KDLP---- 276

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEK 336
             + +G     +EGG  +  S  +   +D+++L+    +I E      + +P +   L  
Sbjct: 277 --LEKGFN--FIEGGWELFESLRDK--IDALLLHSHASMISEAFSAFALKTPFKGRLLHA 330

Query: 337 NF 338
             
Sbjct: 331 QI 332


>gi|167044545|gb|ABZ09219.1| putative RibD C-terminal domain protein [uncultured marine
           crenarchaeote HF4000_APKG6N3]
          Length = 217

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 56/196 (28%), Positives = 95/196 (48%), Gaps = 6/196 (3%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             +    A++ D  +      S  ++    K +VH LR++ DAIL+G  TV  DDP L+ 
Sbjct: 6   PRVIFSAAITLDGKLATRSGDSK-LSSKKDKIRVHKLRSKVDAILIGKNTVKIDDPLLSV 64

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII-VTENDDPVLALAFRKKNINII 268
               +++ +P+RIILD +  +   S+I+KT    P II V++           K  + +I
Sbjct: 65  H--NIKKKNPIRIILDSNATIRSSSRILKTCSKIPTIIAVSKKAQKKNLQKLEKFPVQVI 122

Query: 269 YC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            C  D   +KKLL IL  +G+ ++LVEGG     +F+   LVD  I+  +  ++G     
Sbjct: 123 VCGNDTVSIKKLLGILKKKGIKNILVEGGGTANWAFVKENLVDEAIITITPYLVGGMTAT 182

Query: 327 SPLEEGYLEKNFMCVR 342
           + ++          +R
Sbjct: 183 TLVDGDGFSTIAKSIR 198


>gi|317182710|dbj|BAJ60494.1| riboflavin biosynthesis protein [Helicobacter pylori F57]
          Length = 344

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 78/362 (21%), Positives = 132/362 (36%), Gaps = 77/362 (21%)

Query: 14  ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63
            L  +  H  L   NPSVAC ++ K   ++          PHAEV A + A         
Sbjct: 11  CLNKAWEHQTLALENPSVACMVLDKHHEILSLETHKKAKTPHAEVLAAKSALKILRPSLK 70

Query: 64  --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                   +     +TLEPC+ YG++P C+  +     +RVV+ 
Sbjct: 71  NDLEKLEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIA 130

Query: 104 VDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            ++ + +  G   LQ    +GI+ + +      + L   +  Q  + +   L + ++ D 
Sbjct: 131 TEENEAKKGGLARLQKARIEGIVCESLENKAKDLLLPFRIMEQKGRFNLFKLALRMNGDY 190

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPM 220
             G        ITG  S    H  RA  D ++V   T+  D+P L  R      Q  +P 
Sbjct: 191 CHG-------KITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPN 243

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
             IL  H  +  +SK+      AP  +V    DP                  +DL     
Sbjct: 244 IAILSKHP-IDPNSKVFS----APNRLVNAFYDP------------------KDLP---- 276

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEK 336
             + +G     +EGG  +  S  +   +D+++L+    +I E      + +P +   L  
Sbjct: 277 --LEKGFN--FIEGGWELFESLRDK--IDALLLHSHASMISEAFNAIALKTPFKGRLLHA 330

Query: 337 NF 338
             
Sbjct: 331 QI 332


>gi|315585891|gb|ADU40272.1| riboflavin biosynthesis protein RibD [Helicobacter pylori 35A]
          Length = 344

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 73/334 (21%), Positives = 124/334 (37%), Gaps = 73/334 (21%)

Query: 14  ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63
            L  +  H  L   NPSVAC ++ K+  ++          PHAEV A + A         
Sbjct: 11  CLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPGLK 70

Query: 64  --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                   +     +TLEPC+ YG++P C+  +     +RVV+ 
Sbjct: 71  NDLEKLEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIA 130

Query: 104 VDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            ++ + +  G   LQ     G++ + +      + L   +  Q  + +   L + ++ D 
Sbjct: 131 TEENEAKKGGLARLQKARIDGVVCESLENKAKDLLLPFRIMEQKGRFNLFKLALRMNGDY 190

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPM 220
             G        ITG  S    H  RA  D ++V   T+  D+P L  R      Q  +P 
Sbjct: 191 YHG-------KITGQKSVVFTHNQRAVCDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPN 243

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
             IL  H  +  +SK+      AP  +V    DP                  +DL     
Sbjct: 244 IAILSKH-SIDPNSKVFS----APNRLVNAFYDP------------------KDLP---- 276

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
             + +G     +EGG  +  S  +   +D+++L+
Sbjct: 277 --LEKGFN--FIEGGWELFESLRDK--IDALLLH 304


>gi|308064267|gb|ADO06154.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori Sat464]
          Length = 344

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 76/362 (20%), Positives = 132/362 (36%), Gaps = 77/362 (21%)

Query: 14  ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63
            L  +  H  L   NPSVAC ++ K+  ++          PHAEV A + A         
Sbjct: 11  CLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRPGLK 70

Query: 64  --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                   +     +TLEPC+ YG++P C+  +     +RVV+ 
Sbjct: 71  NDLEKLEDPKTLSDFLKTHHNNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIA 130

Query: 104 VDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            ++ + +  G   L+    +G++ + +      + L   +  Q  + +   L + ++ D 
Sbjct: 131 TEENEAKKGGLARLKKARIEGVVCESLKNKAKDLLLPFRIMEQKGRFNLFKLALRMNGDY 190

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPM 220
             G        ITG  S    H  RA  D ++V   T+  D+P L  R      Q  +P 
Sbjct: 191 HHG-------KITGQKSVVFTHNQRAICDTLIVSGKTIRTDNPLLDTRFCDSFYQNKNPN 243

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
             IL  H  +   SK+      AP  +V    DP                  +DL     
Sbjct: 244 IAILSKH-SIDPHSKVFS----APNRLVNAFYDP------------------KDLP---- 276

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEK 336
             + +G     +EGG  +  S  +   +D+++L+    +I E      + +P +   L  
Sbjct: 277 --LEKGFN--FIEGGWELFESLRDK--IDALLLHSHASMISEAFSALALKTPFKGRLLHA 330

Query: 337 NF 338
             
Sbjct: 331 QI 332


>gi|328545540|ref|YP_004305649.1| Bifunctional deaminase-reductase domain protein [polymorphum gilvum
           SL003B-26A1]
 gi|326415281|gb|ADZ72344.1| Bifunctional deaminase-reductase domain protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 262

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 2/173 (1%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
            +  ++  S D  I      S  I G    + +H LRA  DA+++G GT +ADDP+LT R
Sbjct: 55  FVVGQLGQSLDGRIATVNGQSKYINGPGCLSHLHRLRAVCDAVVIGAGTAIADDPQLTVR 114

Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270
           L  +    P R+++DP  +L    K ++       ++  E     +  +     +     
Sbjct: 115 L--VDGPHPARVLIDPRGRLPATLKALRDDGTRRFVVTLEGTRLNVPESVEIIRLAGDRD 172

Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
                + ++  L   G   LLVEGG+     F++S  +D + L  + ++IG G
Sbjct: 173 GHLAPRAIVEALASHGFRRLLVEGGSWTISRFLSSGCLDRLHLLIAPMIIGAG 225


>gi|291617164|ref|YP_003519906.1| RibD [Pantoea ananatis LMG 20103]
 gi|291152194|gb|ADD76778.1| RibD [Pantoea ananatis LMG 20103]
          Length = 162

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 50/153 (32%), Positives = 74/153 (48%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  AL +SR  +     NP V C+IV+DG V+ +G T   G  HAE+ A+ +        
Sbjct: 1   MMLALEYSRQALPECRPNPPVGCVIVRDGEVVAKGFTQPPGQHHAEIDAIAKLTFPISEC 60

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
             YVTLEPCS  GR+P CA  I E   + + + +DDP  +  G G   L + GI + R  
Sbjct: 61  EIYVTLEPCSFQGRTPSCALTIAELKPKHIYIAMDDPHPKNRGAGRTILKKAGIALHRAS 120

Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163
           ES       + +  ++  + H   +I +S    
Sbjct: 121 ESRRSRNFFSPIWTRLRHKHHFYRRIGISAGRY 153


>gi|188528275|ref|YP_001910962.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori Shi470]
 gi|188144515|gb|ACD48932.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori Shi470]
          Length = 344

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 76/362 (20%), Positives = 133/362 (36%), Gaps = 77/362 (21%)

Query: 14  ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63
            L  +  H  L   NPSVAC ++ K+  ++          PHAEV A + A         
Sbjct: 11  CLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRPGLK 70

Query: 64  --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                   +     +TLEPC+ YG++P C+  +     +RVV+ 
Sbjct: 71  NDLEKLEDPKTLSDFLKTHHNNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIA 130

Query: 104 VDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            ++ + +  G   L+    +G++ + +      + L   +  Q  + +   L + ++ D 
Sbjct: 131 TEENEAKKGGLARLKKARIEGVVCESLKNKAKDLLLPFRIMEQKGRFNLFKLALRMNGDY 190

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPM 220
             G        ITG  S    H  RA  D ++V   T+  D+P L  R      Q  +P 
Sbjct: 191 CHG-------KITGQKSVVFTHNQRAICDTLIVSGKTIRTDNPLLDTRFCDSFYQNKNPN 243

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
             IL  H  +  +SK+      AP  +V    DP                  +DL     
Sbjct: 244 IAILSKH-SIDPNSKVFS----APNRLVNAFYDP------------------KDLP---- 276

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEK 336
             + +G     +EGG  +  S  +   +D+++L+    +I E      + +P +   L  
Sbjct: 277 --LEKGFN--FIEGGWELFESLRDK--IDALLLHSHASMISEAFSALALKTPFKGRLLHA 330

Query: 337 NF 338
             
Sbjct: 331 QI 332


>gi|158317044|ref|YP_001509552.1| deaminase-reductase domain-containing protein [Frankia sp. EAN1pec]
 gi|158112449|gb|ABW14646.1| bifunctional deaminase-reductase domain protein [Frankia sp.
           EAN1pec]
          Length = 252

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 88/247 (35%), Gaps = 37/247 (14%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           +  R ++ L  A+S D  I       + ++     ++V  +RA  DAILVG  T+  D+P
Sbjct: 1   MTARPYVLLSCAMSLDGRIDDCSPQRLVLSSQADLDRVDEVRAGCDAILVGARTLRRDNP 60

Query: 206 ELTCRLN--------GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND----- 252
            L  R            +  +P+R +L    +L  D++         V            
Sbjct: 61  GLAVRSERRRAERTAAGRPATPLRAVLTSGGRLDPDARFFLDGAEKVVYRFAGAAPRPAP 120

Query: 253 -------------------DPVLALAFRKKNI-NIIYCDCRDLKKLLTILVGRGVTSLLV 292
                               P  A+      +  ++  +   L+ LL  L  RG   LLV
Sbjct: 121 ESGPGAGAGAGAGAGTGTGSPAPAVPPDLSAVATVVDLEAPPLEHLLDDLSRRGTRRLLV 180

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGS 348
           EGG  V  +F+ + LVD + L  +   +GE   P+ +  G            V       
Sbjct: 181 EGGTTVHTAFLTAGLVDELHLVIAPFFVGEAAAPTFVGPGSFPFDTAHRLRLVDVRQLDD 240

Query: 349 DVCLEYI 355
            V L Y+
Sbjct: 241 VVLLRYL 247


>gi|149375142|ref|ZP_01892914.1| bifunctional deaminase-reductase-like protein [Marinobacter
           algicola DG893]
 gi|149360506|gb|EDM48958.1| bifunctional deaminase-reductase-like protein [Marinobacter
           algicola DG893]
          Length = 290

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 49/206 (23%), Positives = 88/206 (42%), Gaps = 13/206 (6%)

Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214
           ++  S D  I      S  I G      +H LRA S+A++VG GT   D+P LT R    
Sbjct: 79  QMGQSLDGRIATVTGASKFINGEDGITHLHRLRAVSEAVIVGAGTASTDNPRLTVRKT-- 136

Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC---- 270
              +P+R+++D + ++     +      +P + +   D         +  +  + C    
Sbjct: 137 SGINPVRVVIDRNHRVPDSHHLFSDE-ASPTLRLVAGDYHAGDKLAPRHGVTDVPCLGRD 195

Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           D  D   +L +L   G+  + VEGG      F+N+ L+D + +  + ++IG  G P+   
Sbjct: 196 DTTDPAHILEVLADFGLRKIFVEGGGLTVSEFLNAALLDRLHVMVAPMIIGS-GRPA-FS 253

Query: 331 EGYLEKNFMCVRRDY----FGSDVCL 352
              ++K    +R        GSD+  
Sbjct: 254 LPEIKKLDRALRPKAQMVDLGSDMLF 279


>gi|330944605|gb|EGH46556.1| ribD C-terminal domain-containing protein [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 224

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 79/190 (41%), Gaps = 12/190 (6%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
             +T+   +S D  + M    S               +H  R + DAI+VG  T++ DDP
Sbjct: 1   MKVTVFSQISIDGKLTMGKGASSKPLFQNFDDDDMRFIHKFRGEVDAIMVGRNTIVTDDP 60

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND--DPVLALAFRKK 263
           +LT R       +P+RII      L   + I K+      II T     D  +    R  
Sbjct: 61  QLTNRYE--SGRNPIRIIPTTSLDLPTSASIFKSPE--KTIIATSEQARDHEMVKNIRAC 116

Query: 264 NINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
              +++   +  D  +L  +L  RG+  ++VEGG  +     N  LVD IIL +  I+IG
Sbjct: 117 GKEVLFAGAKHVDFTRLFPMLEARGINHIMVEGGGHLNWQVFNLDLVDEIILMQVPIIIG 176

Query: 322 EGGIPSPLEE 331
                +  + 
Sbjct: 177 GAATATLADG 186


>gi|167044799|gb|ABZ09467.1| putative RibD C-terminal domain protein [uncultured marine
           crenarchaeote HF4000_APKG8D6]
          Length = 217

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 58/196 (29%), Positives = 95/196 (48%), Gaps = 6/196 (3%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             +    A++ D  +      S  ++    K +VH LR++ DAIL+G  TV  DDP L+ 
Sbjct: 6   PRVIFSAAITLDGKLATRSGDSK-LSSKKDKIRVHKLRSKVDAILIGKNTVKFDDPLLSV 64

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA-FRKKNINII 268
               +++ +P+RIILD +  +S  S+I+KT    P IIV         L    K  + +I
Sbjct: 65  H--NIKKKNPIRIILDSNATISSSSRILKTCSKIPTIIVVSKKAQKKNLQKLEKFPVQVI 122

Query: 269 YC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            C  D   +KKLL IL  +G+ ++LVEGG     +F+   LVD  I+  +  ++G     
Sbjct: 123 VCGNDTVSIKKLLGILKKKGIKNILVEGGGTANWAFVKENLVDEAIITITPYLVGGMTST 182

Query: 327 SPLEEGYLEKNFMCVR 342
           + ++          +R
Sbjct: 183 TLVDGDGFSTIAKSIR 198


>gi|28868061|ref|NP_790680.1| ribD C-terminal domain-containing protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28851297|gb|AAO54375.1| ribD C-terminal domain protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|331018395|gb|EGH98451.1| ribD C-terminal domain protein [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 224

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 8/188 (4%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
             +T+   +S D  + M    S               +H  R + DAI+VG  T++ DDP
Sbjct: 1   MKVTVFSQISIDGKLTMGKGASSKPLFQNFDDDDMRFIHKFRGEVDAIMVGRNTIVTDDP 60

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
           +LT R       +P+RII      L   + I K+     +    +  D  +    R    
Sbjct: 61  QLTNRYE--SGRNPIRIIPTTSLDLPTSASIFKSPEKTIIATSEQARDHEMVKHIRACGK 118

Query: 266 NIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            +++   +  D  +L  +L  RG+  ++VEGG  +     N  LVD IIL +  I+IG  
Sbjct: 119 EVLFAGAKHVDFTRLFPMLEARGINHIMVEGGGHLNWQVFNLDLVDEIILMQVPIIIGGA 178

Query: 324 GIPSPLEE 331
              +  + 
Sbjct: 179 ATATLADG 186


>gi|258650582|ref|YP_003199738.1| bifunctional deaminase-reductase domain-containing protein
           [Nakamurella multipartita DSM 44233]
 gi|258553807|gb|ACV76749.1| bifunctional deaminase-reductase domain protein [Nakamurella
           multipartita DSM 44233]
          Length = 230

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 84/221 (38%), Gaps = 12/221 (5%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           + +R +  L    S D  +  AG   + ++     ++V  +RA  DAILVG  TV  D+P
Sbjct: 1   MSERPYTLLSCCTSLDGYLAGAGQRRLLLSNDADFDRVDEVRAGCDAILVGAATVRKDNP 60

Query: 206 ELTCRLNGLQE--------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
            L  R    ++         SP ++ L    +L   ++          +    +      
Sbjct: 61  RLLVRTATRRDDRVTRGQAPSPAKVTLTCGAQLDPTARFFTEGETDRYVYCASSAVTQAR 120

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
            +   +   I      DL  +   L GRG+  L+VEGG +V   F+ + L D + L  + 
Sbjct: 121 RSLGPRATVIDGGQPVDLAWMSQDLYGRGIRRLMVEGGGSVHTQFLTAGLADELNLVIAP 180

Query: 318 IVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEY 354
             +G+      +++G       +          G  V L Y
Sbjct: 181 FFVGDHRGRRFVDDGDFPFHPGRRARLAEVRQIGDVVLLRY 221


>gi|254389245|ref|ZP_05004474.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|326444933|ref|ZP_08219667.1| putative riboflavin-specific deaminase/reductase [Streptomyces
           clavuligerus ATCC 27064]
 gi|197702961|gb|EDY48773.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 227

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 89/225 (39%), Gaps = 12/225 (5%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           +  R ++ L  A++ D  +  A    + ++     ++V  +RAQSDAIL+G  TV  D+P
Sbjct: 1   MIARPYVVLSAAMTVDGYLDDASPERLLLSNAADFDRVDQVRAQSDAILIGATTVRKDNP 60

Query: 206 ELTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
            L          R+   +   P+++ +     LS D           VI V +  + V  
Sbjct: 61  RLLVNSDERRAKRVADGKSAYPLKVTVTRTGDLSADLNFWHHGGKKLVITVDDAVEKVRT 120

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
                 ++  +  D RD   +L  L  R V  L+VEGG  +    + + L D + L  + 
Sbjct: 121 TLGDLADVVSVGPDLRDWGLVLDELGRRNVGQLMVEGGGTIHTQLMAADLADEVHLAIAP 180

Query: 318 IVIGEGGIPSPLE----EGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           +++G+ G    L      G        +        V + Y  K 
Sbjct: 181 LLVGQPGAARFLGAADYPGGSTARMKVLEVRAIDDMVFVRYAPKE 225


>gi|298485418|ref|ZP_07003506.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298160054|gb|EFI01087.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 224

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 8/188 (4%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
             +T+   +S D  + M    S               +H  R + DAI+VG  T++ DDP
Sbjct: 1   MKVTVFSQISIDGKLTMGKGASSKPLFQNFDDDDMRFIHKFRGEVDAIMVGRNTIVTDDP 60

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
           +LT R        P+RII      L   + I K+     +    +  D  +    R    
Sbjct: 61  QLTNRYE--SGRDPIRIIPTTSLDLPTSASIFKSPEKTIIATTEQARDHEMVKHIRACGK 118

Query: 266 NIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            +++   +  D  +L  +L  RG+  ++VEGG  +     N  LVD IIL +  I+IG  
Sbjct: 119 EVLFAGAKHVDFTRLFPMLEARGINHIMVEGGGHLNWQVFNLDLVDEIILMQVPIIIGGA 178

Query: 324 GIPSPLEE 331
              +  + 
Sbjct: 179 ATATLADG 186


>gi|311898176|dbj|BAJ30584.1| putative 5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Kitasatospora setae KM-6054]
          Length = 231

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 85/225 (37%), Gaps = 13/225 (5%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             R H+ L  AVS D  +  A    + ++     ++V  LRA SDAILVG GT+ AD+P 
Sbjct: 1   MPRPHVLLSAAVSIDGHLDDASPERLLLSNAADFDRVDALRADSDAILVGGGTLRADNPR 60

Query: 207 L--------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           L          R        P+++ L    +L    +   T               + A 
Sbjct: 61  LLVNSPERRAARTAAGLPAYPLKVTLSASGRLDPALRFWHTGGAKLAYTTDATAPALAAA 120

Query: 259 AFRKKNINIIYCDC-RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
                   ++       L  +L  L  RGV  L+VEGG +V   F+   L D + L  + 
Sbjct: 121 LAGAPGTEVVGLGAAVPLGAVLDDLGARGVRRLMVEGGGSVHTRFLAEGLADELQLAVAP 180

Query: 318 IVIGEGGIPSPLE----EGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           +++G+   P  L      G   +    +     G  V L Y  K 
Sbjct: 181 LLVGQADAPRFLSPAAYPGGPARRMRLLGARTVGDVVLLRYAPKE 225


>gi|282164321|ref|YP_003356706.1| putative 2,5-diamino-6-hydroxy-4-(5- phosphoribosylamino)pyrimidine
           reductase [Methanocella paludicola SANAE]
 gi|282156635|dbj|BAI61723.1| putative 2,5-diamino-6-hydroxy-4-(5- phosphoribosylamino)pyrimidine
           reductase [Methanocella paludicola SANAE]
          Length = 227

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 97/221 (43%), Gaps = 14/221 (6%)

Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTV 200
               R ++TL   ++ D  + +    S  I        S+  +H  R + DAI+VG  T+
Sbjct: 1   MSASRPYVTLISEMTVDGKLTLKRGLSSKIIMGLMDMESQRFLHKKRTEFDAIMVGSNTI 60

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
             D+  LT RL  ++  SP+R++      +   S ++       +I+V+    P    A 
Sbjct: 61  KIDNSILTNRL--VEGRSPVRVVPCSDASIPPGSNVLNHD-APTIIVVSGRASPEKVEAI 117

Query: 261 RKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
           R+K   ++ C  +  DL+ ++  L  RG+  L+VEGG  +    I   ++D IIL +   
Sbjct: 118 RQKGAEVMVCGKEAVDLELMMEGLTKRGIKRLMVEGGPTLIWLLIQKHMIDHIILIQIPY 177

Query: 319 VIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEY 354
           +IG    PS +    ++     V  D       G+ +  EY
Sbjct: 178 IIGGDSTPSLVGGPGVDSIGQVVGTDLTDFYKVGNHLITEY 218


>gi|158425795|ref|YP_001527087.1| putative pyrimidine reductase [Azorhizobium caulinodans ORS 571]
 gi|158332684|dbj|BAF90169.1| putative pyrimidine reductase [Azorhizobium caulinodans ORS 571]
          Length = 246

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 4/173 (2%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
            +  ++  S D  I +    S  I G    + +H +RA  DA+LVG+GTV+ADDP+L  R
Sbjct: 21  FVIGQLGQSLDGRIALPSGESKYINGASGLDHIHRIRAMVDAVLVGVGTVIADDPQLNVR 80

Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270
              +    P R++LDP+ +L   ++ ++      +++         AL    + + +   
Sbjct: 81  R--VPGRDPARVVLDPNGRLPASARCLQNDGARRLVV--RRPSAAGALPDGVERVEVEGT 136

Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
              D   ++  L  RG+  +LVEGG     +F++   +D   +  S +++G G
Sbjct: 137 GALDPAAVVAALRARGLKRILVEGGPRTLSAFLDGGAIDHFHIIVSPVILGSG 189


>gi|118431394|ref|NP_147843.2| pyrimidine nucleotide reductase [Aeropyrum pernix K1]
 gi|116062718|dbj|BAA80270.2| pyrimidine nucleotide reductase [Aeropyrum pernix K1]
          Length = 220

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 76/180 (42%), Gaps = 9/180 (5%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             R +  +    + D  I         ++        H  RA +DA++VG  T + D P 
Sbjct: 1   MARPYTFIFSTATLDGRIASITG-YSLLSCREDFELQHKYRASADAVMVGSRTAVLDRPR 59

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
           LT RL   +  SP+R+++D   K+  D   +       V++  E         + ++ + 
Sbjct: 60  LTVRL--ARGRSPLRVVVDSGLKVPPD---VAGLRRGSVLVTAEGHSRERLKPYLERGVE 114

Query: 267 IIYCDC--RDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           ++       DL++ + +L  R GV  L+VEGG  +  + +   LVD +    +  + G G
Sbjct: 115 VVEAGRGKVDLERAVAVLRERLGVRVLMVEGGGGLNCAMLEKGLVDEVRATIAPYIFGGG 174


>gi|330988983|gb|EGH87086.1| ribD C-terminal domain-containing protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 224

 Score =  135 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 8/188 (4%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
             +T+   +S D  + M    S               +H  R + DAI+VG  T++ DDP
Sbjct: 1   MKVTVFSQISIDGKLTMGKGASSKPLFQNFNDDDMRFIHKFRGEVDAIMVGRNTIVTDDP 60

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
           +LT R       +P+RII      L   + I K+     +    +  D  +    R    
Sbjct: 61  QLTNRYE--SGRNPIRIIPTTSLDLPASASIFKSPEKTIIATTEQARDHDMVKHIRACGK 118

Query: 266 NIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            +++   +  D  +L  +L  RG+  ++VEGG  +     N  LVD IIL +  I+IG  
Sbjct: 119 EVLFAGAKHVDFTRLFPMLEARGIKHIMVEGGGNLNWQVFNLDLVDEIILMQVPIIIGGA 178

Query: 324 GIPSPLEE 331
              +  + 
Sbjct: 179 ATATLADG 186


>gi|161529120|ref|YP_001582946.1| deaminase-reductase domain-containing protein [Nitrosopumilus
           maritimus SCM1]
 gi|160340421|gb|ABX13508.1| bifunctional deaminase-reductase domain protein [Nitrosopumilus
           maritimus SCM1]
          Length = 218

 Score =  135 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 62/219 (28%), Positives = 96/219 (43%), Gaps = 11/219 (5%)

Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
             + R H+ L  A+S D  I      S  ++      ++H LR+  DAIL+G  T   D+
Sbjct: 1   MEKSRPHVILSGAISVDGKIATKTNDSK-LSSQKDIQRLHKLRSSVDAILIGKNTASRDN 59

Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA-FRKK 263
           P LT R   ++  +P+RI+LD    +S  SKI++++   P II          L    K 
Sbjct: 60  PLLTVR--HVKGKNPIRIVLDSKGTISKTSKILQSSNKVPTIIAISKKITKKNLEKLEKF 117

Query: 264 NINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            + II    D  +LK LL  L  + + ++LVEGG  V   F+   L D +IL  S  ++G
Sbjct: 118 PVEIISTGNDSVNLKLLLKKLSKKKIKTILVEGGGTVNWEFVKHNLFDEMILTISPYLLG 177

Query: 322 EGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355
                S L      +     N          + + L Y+
Sbjct: 178 GEDSISYLRGTGFSRISHSPNLRLKSVKRLKNHLVLHYV 216


>gi|169607048|ref|XP_001796944.1| hypothetical protein SNOG_06577 [Phaeosphaeria nodorum SN15]
 gi|111065288|gb|EAT86408.1| hypothetical protein SNOG_06577 [Phaeosphaeria nodorum SN15]
          Length = 255

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 21/178 (11%)

Query: 169 CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN-------GLQEHSPMR 221
                ++G  SK   H LR++ DAIL+G GT +ADDP L CR++          E  P  
Sbjct: 60  GIQTALSGPQSKAMTHYLRSRHDAILIGCGTAIADDPSLNCRIDGVGGYGGAGLEGQPRP 119

Query: 222 IILDPHFKLSLD--SKIIKTALLAP---VIIVTEND--DPVLALAFRKKNINIIYCDCR- 273
           +++DP+ +  +   SK++K A       V +V+          +            +   
Sbjct: 120 VVVDPNGRWDVSDASKVVKLAREGRGKGVWVVSAKGSISEEKKVVVESVGGEAFELEVVE 179

Query: 274 ---DLKKLLTILVGRGVTSLLVEGGAAVAHSFI---NSRLVDSIILYRSQIVIGEGGI 325
              D KK+L +L   G+ S+++EGG AV +  +   N  LVDS+I+  + + +G+GG+
Sbjct: 180 GKMDWKKILNVLAKEGIRSVMIEGGGAVINGLLSKENMGLVDSVIVTIAPVWLGKGGV 237


>gi|254780015|ref|YP_003058122.1| Riboflavin biosynthesis protein RibD [Helicobacter pylori B38]
 gi|254001928|emb|CAX30181.1| Riboflavin biosynthesis protein RibD [Helicobacter pylori B38]
          Length = 344

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 77/360 (21%), Positives = 130/360 (36%), Gaps = 81/360 (22%)

Query: 14  ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR---- 68
            L  +  H  L   NPSVAC ++ K+  ++           HAEV A + A +  R    
Sbjct: 11  CLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTSHAEVLAAKSALKILRPHLK 70

Query: 69  -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                         +TLEPC+ YG++P C++ +     +RVV+ 
Sbjct: 71  NDLEKLEDPKILSDFLKTRHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIA 130

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK---RSHITLKIAVSQ 160
            ++ + +  G  L  L +  I        E K        R +E+    +   L + ++ 
Sbjct: 131 TEENEAKKGG--LARLQKACIETIICRNLENKAKDLLLPFRIMEQKGRFNLFKLALRMNG 188

Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHS 218
           D   G        ITG  S    H  RA  D +++   T+  D+P L  R      Q  +
Sbjct: 189 DYHHG-------KITGPKSVIFTHNQRAICDTLIISGKTIRTDNPLLDARFCDSFYQHKN 241

Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
           P   IL     +   SK+      AP  +V    DP                  +DL   
Sbjct: 242 PNIAILSKR-SIDPHSKVFS----APNRLVNTFHDP------------------KDLP-- 276

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYL 334
               + +G     +EGG  +  S  +   +D+++L+    +IG+      + +P +   L
Sbjct: 277 ----LEKGFN--FIEGGWGLFESLRDK--IDALLLHSHASMIGKAFNTLALKTPFKGRLL 328


>gi|308062769|gb|ADO04657.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori Cuz20]
          Length = 344

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 72/334 (21%), Positives = 125/334 (37%), Gaps = 73/334 (21%)

Query: 14  ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63
            L  +  H  L   NPSVAC ++ K+  ++          PHAEV A + A         
Sbjct: 11  CLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRPGLK 70

Query: 64  --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                   +     +TLEPC+ YG++P C+  +     +RVV+ 
Sbjct: 71  NDLEKLEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIA 130

Query: 104 VDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            ++ + +  G   L+    +G++ + +      + L   +  Q  + +   L + ++ D 
Sbjct: 131 TEENEAKKGGLARLKKARIEGVVCESLENKAKDLLLPFRIMEQKGRFNLFKLALRMNGDY 190

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPM 220
             G        ITG  S    H  RA  D ++V   T+  D+P L  R      Q  +P 
Sbjct: 191 CHGR-------ITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPN 243

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
             IL  H  +  +SK+      AP  +V    DP                  +DL     
Sbjct: 244 IAILSKH-SIDPNSKVFS----APNRLVNAFYDP------------------KDLP---- 276

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
             + +G     +EGG  +  S  +   +D+++L+
Sbjct: 277 --LEKGFN--FIEGGWELFESLRDK--IDALLLH 304


>gi|328848151|gb|EGF97399.1| hypothetical protein MELLADRAFT_79837 [Melampsora larici-populina
           98AG31]
          Length = 269

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 104/242 (42%), Gaps = 22/242 (9%)

Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
            H  L   + +R  +TL  A S D  I       + ++G  S    H++R + D ILVGI
Sbjct: 27  FHQNLNHDLSRRPFVTLTYAQSLDGKIAGVDGRQLRLSGNQSMKMTHMMRTRHDGILVGI 86

Query: 198 GTVLADDPELTCR---LNGLQEHSPMRIILDPHFKLSLDSKIIK----TALLAPVIIVTE 250
           GT+L DDP+LT R        E+ P  I+LD   +  +D K+IK         P +I   
Sbjct: 87  GTLLNDDPQLTARNLSFTVPLENQPQPIVLDTRLRTPIDCKLIKNYRNQTGKQPWLICAR 146

Query: 251 ND-DPVLALAFRKKNINIIYC--------DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           +        +  +    +I             DL+K+  +    G+  L++EGG+++  S
Sbjct: 147 SMISSQDRQSLEEAGARVIPITNGMNPSNQGLDLEKVFEVCKINGINRLMIEGGSSIISS 206

Query: 302 FI----NSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
            +    +  +++ +++  S  ++GEG  + +   +  L      ++    GSD    Y  
Sbjct: 207 CLNYTGDHPILNILVVTVSPYMVGEGLTVKTSNIDSRLSL-LRHIQTKILGSDAVFAYTS 265

Query: 357 KN 358
            N
Sbjct: 266 SN 267


>gi|217034301|ref|ZP_03439718.1| hypothetical protein HP9810_885g32 [Helicobacter pylori 98-10]
 gi|216943273|gb|EEC22738.1| hypothetical protein HP9810_885g32 [Helicobacter pylori 98-10]
          Length = 344

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 77/362 (21%), Positives = 131/362 (36%), Gaps = 77/362 (21%)

Query: 14  ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63
            L  +  H  L   NPSVAC ++ K+  ++          PHAEV A + A         
Sbjct: 11  CLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPGLK 70

Query: 64  --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                   +     +TLEPC+ YG++P C+  +     +RVV+ 
Sbjct: 71  NDLEKLEDPKTLSDFLKTHHDNAFKDCIFLITLEPCNSYGKTPACSGLLEILKPKRVVIA 130

Query: 104 VDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            ++ + +  G   LQ    + II   +      + L   +  Q  + +   L + ++ D 
Sbjct: 131 TEENEAKKGGLARLQKARIETIICHNLENKAKDLLLPFRIMEQKGRFNLFKLALRMNGDY 190

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPM 220
             G        ITG  S    H  RA  D ++V   T+  D+P L  R      Q  +P 
Sbjct: 191 CHG-------KITGQKSVIFTHNQRAVCDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPN 243

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
             IL     +  +SK+      AP  +V                    +CD +DL     
Sbjct: 244 IAILSKR-SIDPNSKVFS----APNRLVNA------------------FCDPKDLP---- 276

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEK 336
             + +G     +EGG  +  S  +   +D+++L+    +I E      + +P +   L  
Sbjct: 277 --LEKGFN--FIEGGWELFESLRDK--IDALLLHSHASMISEAFNAIALKTPFKGRLLHA 330

Query: 337 NF 338
             
Sbjct: 331 QI 332


>gi|29830662|ref|NP_825296.1| riboflavin/cytosine deaminase [Streptomyces avermitilis MA-4680]
 gi|29607774|dbj|BAC71831.1| putative diaminohydroxyphosphoribosylaminopyrimi dine deaminase
           (N-terminal)/ 5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Streptomyces avermitilis MA-4680]
          Length = 376

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 86/220 (39%), Gaps = 12/220 (5%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
               ++ L  AVS D  +   G   + ++G    ++V  +RA SDAILVG GT+  D+P 
Sbjct: 1   MPHPYVLLSAAVSLDGFLDDTGPDRLLLSGPADFDRVDEVRAASDAILVGAGTLRTDNPR 60

Query: 207 L--------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           L          R+       P+++ +     L  D++   T     V    +  + +  L
Sbjct: 61  LLVNSAERRAARVAEGLPEYPLKVTVTASGDLDPDAQFWHTGGEKAVYTTDKGAERLREL 120

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
                 + +      + + +L  L   +GV  L+VEGG  V    +   L D + L  + 
Sbjct: 121 GIAADVVAV--GAELEWRAVLDHLGRVKGVRRLMVEGGGRVHTQLLQQGLADELQLAVAP 178

Query: 318 IVIGEGGIPSPLE-EGYLEKNFMCVRRDYFGSDVCLEYIG 356
           + +G+   P      GY       V     G  V + Y+ 
Sbjct: 179 LFVGQAQAPRMFGSGGYPPGRMRLVETRPVGDVVLMRYVP 218



 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 8/116 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--HAEVQAL 60
           ++ D  +++ A   +      + T  SV  +IV  DG  + RG +  GG P  HAE  AL
Sbjct: 228 TAADRHWLALACELADR-CPPSRTAFSVGAVIVAADGTELARGHSREGGDPVVHAEEAAL 286

Query: 61  EEAG---EEARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVS 112
            +         GAT Y +LEPC+     P PCA+ I++ G+RRVV    +PD  V+
Sbjct: 287 AKLDAEDPRLAGATVYSSLEPCARRTSRPRPCARLILDAGVRRVVTAWREPDTFVA 342


>gi|322711515|gb|EFZ03088.1| hypothetical protein MAA_00162 [Metarhizium anisopliae ARSEF 23]
          Length = 243

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 98/237 (41%), Gaps = 33/237 (13%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
               TL  A S D+ + ++      I+G  S+   H  R++ D IL+G+GT +ADDP L 
Sbjct: 1   MPFTTLTFATSLDSSLTLSPGAPTAISGPRSEAMTHYPRSRHDGILIGVGTAVADDPSLN 60

Query: 209 CRLN-------GLQEHSPMRIILDPHFKL--SLDSKIIK----TALLAPVIIVTENDDPV 255
           CR+           +  P  +++DP  +   + +SK+ K         P ++      P 
Sbjct: 61  CRIAGVGGYGGDGLDGQPRPVVIDPTARWEFTDNSKLFKLCREGRGRPPWVVTALRKPPA 120

Query: 256 LALAFRKK------NINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
              A  +K      N+ I   +      D   LL      G+ S++VE G  + +S ++ 
Sbjct: 121 DIRALLEKYGGKYINVEIPTSNIGEHHLDWNLLLVRFKENGLNSVMVEAGGQIINSLLSP 180

Query: 306 RL---VDSIILYRSQIVIGEGGIP-SP------LEEGYLEKNFMCVRRDYFGSDVCL 352
           +    +D +I+  +   +G+GG+  SP                  V+   FG DV L
Sbjct: 181 QYQPNIDMVIVTIAPTWLGQGGVVLSPRRCFNDSGIAISAARLTGVKWYPFGDDVVL 237


>gi|71737585|ref|YP_275900.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71558138|gb|AAZ37349.1| RibD C-terminal domain protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 217

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 8/188 (4%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
             +T+   +S D  + M    S               +H  R + DAI+VG  T++ DDP
Sbjct: 1   MKVTVFSQISIDGKLTMGKGASSKPLFQNFDDDDMRFIHKFRGEVDAIMVGRNTIVTDDP 60

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
           +LT R       +P+RII      L   + I K+     +    +  D  +    R    
Sbjct: 61  QLTNRYE--SGRNPIRIIPTTSLDLPTSASIFKSPEKTIIATTEQARDHEMVKHIRACGK 118

Query: 266 NIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            +++   +  D  +L  +L  RG+  ++VEGG  +     N  LVD IIL +  I+IG  
Sbjct: 119 EVLFAGAKHVDFTRLFPMLEVRGINHIMVEGGGHLNWQVFNLDLVDEIILMQVPIIIGGA 178

Query: 324 GIPSPLEE 331
              +  + 
Sbjct: 179 ATATLADG 186


>gi|254578456|ref|XP_002495214.1| ZYRO0B06028p [Zygosaccharomyces rouxii]
 gi|238938104|emb|CAR26281.1| ZYRO0B06028p [Zygosaccharomyces rouxii]
          Length = 231

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 95/207 (45%), Gaps = 14/207 (6%)

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
           FL  YL    + +  ITL  A S D+ I         I+   +K   H LR   D ILVG
Sbjct: 13  FLRPYLPPDNDSKPFITLTYAQSLDSRISKGHGIRTTISHPETKTMTHYLRYHHDGILVG 72

Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT-----ALLAPVIIVTEN 251
            GT LADDP L C+ N   + SP  IIL+   K   +   ++          P+I+V+E 
Sbjct: 73  TGTALADDPGLNCKYNDAMDQSPRPIILNHSGKWKFNGSKLQELYEKGHGKKPIIVVSE- 131

Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVEGGAAVAHSFI-NSRLVD 309
                       +++ + C  R    L   L    G+ S++VEGGA V +  + +S LV+
Sbjct: 132 -----LPVDEDSSVDYLVCQSRQWSILFDKLHKEYGLKSIMVEGGANVINQLLMSSNLVN 186

Query: 310 SIILYRSQIVIGEGGIP-SPLEEGYLE 335
           S+I+    + +GE G+  SP     L+
Sbjct: 187 SLIITVGPVYLGEKGVSVSPAGPLQLK 213


>gi|302559850|ref|ZP_07312192.1| riboflavin/cytosine deaminase [Streptomyces griseoflavus Tu4000]
 gi|302477468|gb|EFL40561.1| riboflavin/cytosine deaminase [Streptomyces griseoflavus Tu4000]
          Length = 363

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 86/220 (39%), Gaps = 12/220 (5%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
               ++ L  AVS D  +   G   + ++G    ++V  +RA  DAILVG GT+ AD+P 
Sbjct: 1   MPHPYVLLSAAVSLDGYLDDTGPERLLLSGPADFDRVDEVRASVDAILVGAGTLRADNPR 60

Query: 207 L--------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           L          RL   +   P+++ +    +L   ++   T      ++ T ++    A 
Sbjct: 61  LLVNSPERRAARLAEGRTEYPLKVTVSGSGELDPAARFWHTGGEK--VLYTTDEGAERAR 118

Query: 259 AFRKKNINIIYCDCRDLKKLLTIL-VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
                   +      D ++LL  L   RGV  L+VEGG  +    I   L D + L  + 
Sbjct: 119 VLGIAADVVPLGAELDWRRLLEHLHAARGVRRLMVEGGGLIHTQLITQGLADELQLAVAP 178

Query: 318 IVIGEGGIPSPLEEG-YLEKNFMCVRRDYFGSDVCLEYIG 356
           + +G+   P     G Y             G  V + Y  
Sbjct: 179 LFVGDPEAPRLFGPGAYQGGRLRLTGTRQVGDVVLMRYEP 218



 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 7/87 (8%)

Query: 30  SVACLIVK-DGIVIGRGVTAYGGCP--HAEVQALEEAGE---EARGATAYVTLEPCSHYG 83
           SV  ++V  DG  + RG +  GG P  HAE  AL +A         AT Y +LEPC+   
Sbjct: 253 SVGAVVVAADGTELARGHSREGGDPVVHAEEAALAKADPTDPRLATATVYSSLEPCARRA 312

Query: 84  RSPP-CAQFIIECGIRRVVVCVDDPDV 109
             P  C + I++ G+RRVV    +PD 
Sbjct: 313 SRPASCVRLILDAGVRRVVTAWREPDT 339


>gi|291302010|ref|YP_003513288.1| bifunctional deaminase-reductase domain-containing protein
           [Stackebrandtia nassauensis DSM 44728]
 gi|290571230|gb|ADD44195.1| bifunctional deaminase-reductase domain protein [Stackebrandtia
           nassauensis DSM 44728]
          Length = 215

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 81/214 (37%), Gaps = 9/214 (4%)

Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
              +R  + L  A+S D  +  A    + ++     N+V  LR   DAILVG  TV  D+
Sbjct: 1   MTVRRPWVLLSAAMSLDGYLDDATATRLVLSNDEDLNRVRQLRGHYDAILVGAETVRRDN 60

Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
           P L      +    P ++ L     L   S+   T   AP+++        L     ++ 
Sbjct: 61  PSLRA----VDGPQPRKVTLTATGDLDPASRFFTTG-AAPLVLCPPPVAEELRRRLGERA 115

Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
                     L ++L  L   GV  L+VEGG +V   F+   L D + L  +   +G+  
Sbjct: 116 EVQSLPAGAGLAEILQTLWNLGVRRLMVEGGGSVHTQFLTQGLADELRLAVAPFFVGDAA 175

Query: 325 IPSPLEEGYL----EKNFMCVRRDYFGSDVCLEY 354
            P   E G      +        ++ G    L Y
Sbjct: 176 APRFTEPGKFPHDGQHRMRLYEVEHLGDMAVLHY 209


>gi|167849555|ref|ZP_02475063.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
          B7210]
 gi|167922717|ref|ZP_02509808.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
          BCC215]
          Length = 94

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/91 (50%), Positives = 57/91 (62%)

Query: 3  VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           S  D   M+ ALR +   +  T  NP V C+I +    +G G     G PHAEV AL E
Sbjct: 4  FSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALRE 63

Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFII 93
          AGE ARGATAYVTLEPC+H+GR+PPCA  ++
Sbjct: 64 AGERARGATAYVTLEPCAHFGRTPPCANALV 94


>gi|167828089|ref|ZP_02459560.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
          9]
          Length = 97

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/93 (49%), Positives = 57/93 (61%)

Query: 3  VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           S  D   M+ ALR +   +  T  NP V C+I +    +G G     G PHAEV AL E
Sbjct: 4  FSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALRE 63

Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
          AGE ARGATAYVTLEPC+H+GR+PPCA  ++  
Sbjct: 64 AGERARGATAYVTLEPCAHFGRTPPCANALVAA 96


>gi|164658880|ref|XP_001730565.1| hypothetical protein MGL_2361 [Malassezia globosa CBS 7966]
 gi|159104461|gb|EDP43351.1| hypothetical protein MGL_2361 [Malassezia globosa CBS 7966]
          Length = 245

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 95/222 (42%), Gaps = 18/222 (8%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
            +TL  A SQD  I  A    + ++G  S N  H LRA  DAILVGIGTVLADDP L  R
Sbjct: 19  WVTLTFAQSQDGKIAGANKRPLRLSGEKSMNMTHHLRAMHDAILVGIGTVLADDPRLNVR 78

Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA-PVIIVTENDD-------PVLALAFRK 262
           L+     SP  +ILD H ++  + ++++    A P+++  E  D            A   
Sbjct: 79  LDNYSGLSPRPVILDCHLQMPCECRLLQRVPRADPLVLCAEPADQNARKAWETRRQALEH 138

Query: 263 KNINIIYCDCRD---------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN-SRLVDSII 312
              +I   +               +L +L    + S++VEGGAAV  S +    L+  +I
Sbjct: 139 AGAHIRTVETFTNPQGKLHLAWPSILHVLAHEQLHSVMVEGGAAVIDSILASHHLLHKVI 198

Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           +  S + +GE G+               +       D    +
Sbjct: 199 VTVSPVRVGEDGVGYTATPLQHAPYLQHIDTLELPPDTVFAW 240


>gi|207092337|ref|ZP_03240124.1| riboflavin biosynthesis protein [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 344

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 73/366 (19%), Positives = 126/366 (34%), Gaps = 81/366 (22%)

Query: 12  SAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA------- 63
              L  +  H  L   NPSVAC ++ K+  ++           HAEV A + A       
Sbjct: 9   EMCLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTSHAEVLAAKSALKILRPH 68

Query: 64  ----------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                                     +     +TLEPC+ YG++P C+  +     +RVV
Sbjct: 69  LKSDLEKLEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVV 128

Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK---RSHITLKIAV 158
           +  ++ + +  G  L+ L +  I        E K        R +E+    +   L + +
Sbjct: 129 IAAEENEAKKGG--LERLQKAHIETIICRNLENKAKNLLLPFRIMEQKGRFNLFKLALRM 186

Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQE 216
           + D   G        ITG  S    H  RA  D +++   T+  D+P L  R      Q 
Sbjct: 187 NGDYYHG-------KITGPKSVIFTHNQRAICDTLIISGKTIRTDNPLLDTRFCDSFYQG 239

Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276
            +P   IL     ++  SK+  T                         +   + D +DL 
Sbjct: 240 KNPNIAILSKR-SINPSSKVFSTPNR----------------------LVNTFHDPKDLP 276

Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEG 332
                 + +G     +EGG  +  S  +   +D ++L+    +I E      + +P +  
Sbjct: 277 ------LEKGFN--FIEGGWGLFESLRDK--IDVLLLHSHASMISEAFNTLALKTPFKGR 326

Query: 333 YLEKNF 338
            L    
Sbjct: 327 LLHAQI 332


>gi|289619581|emb|CBI53864.1| unnamed protein product [Sordaria macrospora]
          Length = 302

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 107/240 (44%), Gaps = 37/240 (15%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             +TL  A S D+ + +A      ++G  SK   H LR++  AILVG+GT +ADDP L C
Sbjct: 57  PFVTLTFATSLDSSLSLAPGVRTTLSGPQSKAMTHYLRSRHAAILVGVGTAVADDPGLNC 116

Query: 210 RL-------NGLQEH---SPMRIILDPHFK--LSLDSKIIKTAL----LAPVIIVT---- 249
           ++        G++E     P  IILDP  +  ++  SK+I+ A     L P I V     
Sbjct: 117 KILSPFVAEAGVREQHPNQPRPIILDPSARWEVNEQSKVIQLARLGQGLGPFIFVAKEVS 176

Query: 250 ----ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI-- 303
               E    V ++  +  ++  +  +      +L  +   G+ S+++EGG +V +S +  
Sbjct: 177 SVSEERRAVVESVGGKFVHVKSVEGEGFAWADVLRAIKKEGLDSVMIEGGGSVINSLLTL 236

Query: 304 ----NSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEK---NFMCVRRDYFGSDVCL 352
                  LVDS+I+  +   +G GG+    P  + +            V     G DV L
Sbjct: 237 EQGGEQELVDSVIVTIAPTWLGAGGVLVCPPRVIGKDGQPAPPVRLRDVSWHPLGEDVVL 296


>gi|114570085|ref|YP_756765.1| deaminase-reductase domain-containing protein [Maricaulis maris
           MCS10]
 gi|114340547|gb|ABI65827.1| bifunctional deaminase-reductase domain protein [Maricaulis maris
           MCS10]
          Length = 191

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/212 (30%), Positives = 97/212 (45%), Gaps = 32/212 (15%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             +TLK+A S D  I +A   S  ITG  S+  VH +RA  DA+L GIGT+LADDP LT 
Sbjct: 7   PLVTLKLATSLDGKIALANGVSQWITGPESRAVVHRMRAAHDAVLTGIGTILADDPRLTA 66

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
           R  G  E  P  II+D   +    +++ K    +  +I                      
Sbjct: 67  RPEGGCERQPDVIIMDSQGRTPATAQVFKGGDRSVTLI---------------------- 104

Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS-- 327
              RDL++ +     +G   +++E GA +A + I + LVD I  +R+ +V+G  G+P+  
Sbjct: 105 -PHRDLERAM-----KGCERVMIEAGARIAAAAIQAGLVDRIEWFRAPMVLGGDGLPALA 158

Query: 328 --PLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
              LE       F  V     G+D+   Y   
Sbjct: 159 ALGLETLDKAPIFRRVGVIERGADLQETYERN 190


>gi|54022042|ref|YP_116284.1| putative reductase/deaminase [Nocardia farcinica IFM 10152]
 gi|54013550|dbj|BAD54920.1| putative reductase/deaminase [Nocardia farcinica IFM 10152]
          Length = 373

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 93/219 (42%), Gaps = 10/219 (4%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           +  R ++ L  A+S D  +   G   + ++     ++V  +RA+SDAILVG  T+  DDP
Sbjct: 1   MSGRPYVLLSAAMSLDGHLDDVGPERLRLSDAADFDRVDRVRAESDAILVGAQTLRRDDP 60

Query: 206 ELTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
            L          R+   +   P+++ +    +L    ++      A ++  T      L 
Sbjct: 61  RLLVADQARRAARVAAGKPEHPLKVTVTATGRLDAGLRVWHQGG-AKLVYTTAAGAAALG 119

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
                    ++  +  DL  LL  L  RGV  L+VEGG  V  +F+ + L D + L  + 
Sbjct: 120 DTLTGLAEVVVLGETIDLGALLDDLGARGVERLMVEGGTRVHTAFLAADLADELQLAVAP 179

Query: 318 IVIGEGGIPSPLEEG-YLEKNFMCVRRDYFGSDVCLEYI 355
           +++G  G P  ++   + ++          G    L Y+
Sbjct: 180 LLVGAAGAPRFVDPADFPDRRLTLAEVSRVGDMAVLRYL 218



 Score = 86.1 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 59/134 (44%), Gaps = 8/134 (5%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEA 63
             D RF+  A+  +      + T  SV  +IV DG  I  G +       HAE  AL + 
Sbjct: 226 ERDRRFLRRAIELAH-ASPPSPTAFSVGAVIVADGAEIATGYSRETDPKVHAEEAALNKL 284

Query: 64  ---GEEARGATAYVTLEPCSHY--GRSPPCAQFIIECGIRRVVVCVDDPDVR-VSGRGLQ 117
                    AT Y TLEPCS       PPC   I+  GI RVV+   +P    V+  G++
Sbjct: 285 DPRDPRLSRATIYSTLEPCSQRATAGRPPCTDRILAAGIPRVVIAWREPSTFVVNCVGVE 344

Query: 118 WLSQKGIIVDRMME 131
            L + G+ V  + E
Sbjct: 345 KLREHGVDVVELPE 358


>gi|317124169|ref|YP_004098281.1| bifunctional deaminase-reductase domain protein [Intrasporangium
           calvum DSM 43043]
 gi|315588257|gb|ADU47554.1| bifunctional deaminase-reductase domain protein [Intrasporangium
           calvum DSM 43043]
          Length = 230

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 81/221 (36%), Gaps = 12/221 (5%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           + +R ++ L   +S D  +  +    + ++     ++V   RA SDAILVG  T+  DDP
Sbjct: 1   MPERPYVLLSCGMSIDGYLDTSASKRLLLSNAADFDRVDAERAASDAILVGASTIRKDDP 60

Query: 206 ELTCRLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
            L  R    +          SP ++ +  H  L  ++          ++       P  +
Sbjct: 61  RLLVRSPERRADRVSRGLPASPTKVTVTSHADLDCNASFFTVGETEKLVYCASEAVPEAS 120

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
                    +       +  +L  L GRGV  L+VEGG  V    + + L D + L  + 
Sbjct: 121 ARLSGVATVVDAGQPCTMHHVLEDLHGRGVRRLMVEGGGTVHTQLLTADLADELQLVVAP 180

Query: 318 IVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLEY 354
             +G+      + +G      E+             V L Y
Sbjct: 181 FFVGDSAACRFVGDGDFPWNPERRATLAEVRQIDDVVMLRY 221


>gi|317011639|gb|ADU85386.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Helicobacter pylori SouthAfrica7]
          Length = 344

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 77/360 (21%), Positives = 130/360 (36%), Gaps = 81/360 (22%)

Query: 14  ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63
            L  +  +  L   NPSVAC ++ K+  ++   V      PHAEV A + A         
Sbjct: 11  CLNKAWEYQTLALENPSVACMVLDKNHEILSLEVHKKAKTPHAEVLAAQSALKILRPSLK 70

Query: 64  --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                   +     +TLEPC+ YG++P C++ +     +RVV+ 
Sbjct: 71  SDLEKLEDPKILSGFLKTHHNNAFKDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIA 130

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVE---KRSHITLKIAVSQ 160
            ++ + +  G  L  L +  +        E K        R +E   + +   L + ++ 
Sbjct: 131 TEENEAKKGG--LARLKKAHVEAFTCQSLENKAKDLLLPFRIMEKKGRFNLFKLALRMNG 188

Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL--QEHS 218
           D   G        ITG  S    H  RA  D ++V   T+  DDP L  R         +
Sbjct: 189 DYKHG-------KITGQKSAIFTHNQRATCDTLIVSGKTIRTDDPLLDARFCDGFYHNKN 241

Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
           P   IL      + +S++      AP  +V    +P                  +DL   
Sbjct: 242 PNIAILSKRL-TNPNSRVFS----APNRLVNTFYNP------------------KDLP-- 276

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYL 334
               + +G     +EGG  +  S  +   +D ++L+    VIGE      + +P +   L
Sbjct: 277 ----LEKGFN--FIEGGWELFESLRDK--IDMLLLHAHASVIGESFNPFALKTPFKGRLL 328


>gi|261838779|gb|ACX98545.1| riboflavin-specific deaminase [Helicobacter pylori 51]
          Length = 344

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 78/362 (21%), Positives = 131/362 (36%), Gaps = 77/362 (21%)

Query: 14  ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63
            L  +  H  L   NPSVAC ++ K+  ++          PHAEV A + A         
Sbjct: 11  CLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPGLK 70

Query: 64  --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                   +     +TLEPC+ YG++P C+  +     +RVV+ 
Sbjct: 71  NDLEKLEDPKTLSDFLKTHHDNAFKDCIFLITLEPCNSYGKTPACSGLLEILKPKRVVIA 130

Query: 104 VDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            ++ + +  G   LQ    + II   +      + L   +  Q  + +   L + ++ D 
Sbjct: 131 TEENEAKKGGLARLQKARIETIICHNLENKAKDLLLPFRIMEQKGRFNLFKLALRMNGDY 190

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPM 220
             G        ITG  S    H  RA  D ++V   T+  D+P L  R      Q  +P 
Sbjct: 191 CHG-------KITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPN 243

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
             IL  H  +  +SK+      AP  +V    DP                  +DL     
Sbjct: 244 IAILSKH-SIDPNSKVFS----APNRLVNAFYDP------------------KDLP---- 276

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEK 336
             + +G     +EGG  +  S  +   +D+++L+    +I E      + +P +   L  
Sbjct: 277 --LEKGFN--FIEGGWELFESLRDK--IDALLLHSHASMISEAFNAIALKTPFKGRLLHA 330

Query: 337 NF 338
             
Sbjct: 331 QI 332


>gi|289803145|ref|ZP_06533774.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 189

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/191 (29%), Positives = 84/191 (43%), Gaps = 14/191 (7%)

Query: 109 VRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA 167
            +V+GRGL  L Q GI +   +M SE +     +L R      ++ LK+  S D    MA
Sbjct: 1   PQVAGRGLYRLQQAGIAVSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMA 60

Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------- 216
              S  IT   ++  V  LRAQS AIL    TVLADDP LT R   L             
Sbjct: 61  SGESQWITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENL 120

Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276
             P+RI++D   +++   +I++       I  T+ D      + R  ++   +    DL 
Sbjct: 121 RQPVRIVIDSQNRVTPAHRIVQQPGE-TWIARTQEDSHAWPDSVRTISV-PAHNGHLDLV 178

Query: 277 KLLTILVGRGV 287
            L+  L  + +
Sbjct: 179 VLMMQLGRQQI 189


>gi|257483266|ref|ZP_05637307.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 160

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 16/160 (10%)

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFK 229
           ++ V  LRAQS  +L G  TVLAD   LT R + L              P+R+++D   +
Sbjct: 1   RSAVQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLR 60

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRG 286
           + LD+   +       ++VT            + +  +   D     DL+KL+  L  RG
Sbjct: 61  VPLDAPFFQAGSA---LVVTCAAASARGRYQEEGHEMLALADSAGHVDLRKLMVELATRG 117

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           V  +LVE G  +A +F    LVD   ++ +   +G    P
Sbjct: 118 VNEVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARP 157


>gi|298735524|ref|YP_003728045.1| riboflavin biosynthesis protein RibG [Helicobacter pylori B8]
 gi|298354709|emb|CBI65581.1| Riboflavin biosynthesis protein (RibG) [Helicobacter pylori B8]
          Length = 344

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 76/364 (20%), Positives = 131/364 (35%), Gaps = 77/364 (21%)

Query: 12  SAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA------- 63
              L  +  +  L   NPSVAC ++ K   ++          PHAEV A + A       
Sbjct: 9   EMCLNKAWEYQTLALENPSVACMVLDKHHEILSLETHKKAKTPHAEVLAAKSALKILRPS 68

Query: 64  ----------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                                     +     +TLEPC+ YG++P C++ +     +RVV
Sbjct: 69  LKNDLEKLEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSELLEILKPKRVV 128

Query: 102 VCVDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
           +  ++ + +  G   LQ    + II   +      + L   +  Q  + +   L + ++ 
Sbjct: 129 IAAEENEAKKGGLARLQKARIETIICHNLENKAKDLLLPFRIMEQKGRFNLFKLALRMNG 188

Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHS 218
           D   G        ITG  S    H  RA  + +++   T+  D+P L  R      Q  +
Sbjct: 189 DYHHG-------KITGQKSVIFTHNQRAICNTLIISGKTIRTDNPLLDARFCDHFYQNKN 241

Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
           P   IL     +  +SK+      AP  +V    DP                  +DL   
Sbjct: 242 PNIAILSKR-SIDPNSKVFS----APNRLVNTFHDP------------------KDLP-- 276

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYL 334
               + +G     +EGG  +  S  N   +D+++L+    +IGE      + +P +   L
Sbjct: 277 ----LEKGFN--FIEGGWELFESLRNK--IDALLLHSHASMIGEAFSVLALKTPFKGRLL 328

Query: 335 EKNF 338
               
Sbjct: 329 HAQI 332


>gi|320585803|gb|EFW98482.1| riboflavin biosynthesis protein [Grosmannia clavigera kw1407]
          Length = 281

 Score =  133 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 105/246 (42%), Gaps = 41/246 (16%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           ++  +TL  A S D+ + +A      ++G  SK   H LR++ DAI VG+GT +ADDP L
Sbjct: 30  QKPFVTLTFATSLDSSLSLAPGVRTALSGPQSKAMTHYLRSRHDAICVGVGTAVADDPGL 89

Query: 208 TCRLNG-------LQEHSPMRIILDPHFKLSL--DSKIIKTAL----LAPVIIVT-ENDD 253
            CR+         +  H P  I++DPH +  L  +S+++ TA     LAP I+   +  D
Sbjct: 90  NCRIADDTDGAASVSAHQPRPIVIDPHDRWPLAHESRVLATARRGQGLAPYIVTAVQQPD 149

Query: 254 PVLALAFRKKNINIIYC-----------------DCRDLKKLLTILVGRGVTSLLVEGGA 296
                         I                   D      +L  +   G+ S+++EGG 
Sbjct: 150 AAKQKLLESHGGKYIILSTVHGSAATATAPPEPSDRFRWDDVLDSVASHGLRSIMIEGGG 209

Query: 297 AVAHSFIN---SRLVDSIILYRSQIVIGEGGI---PSPL----EEGYLEKNFMCVRRDYF 346
            + ++ +    + LV S+I+  + + +G GG+   P+ +               V+    
Sbjct: 210 NIINTLLEPTNTHLVRSVIVTIAPVWLGRGGVMVSPNRVHGADNRAVPAARLADVKWQQL 269

Query: 347 GSDVCL 352
           G DV L
Sbjct: 270 GEDVVL 275


>gi|149916459|ref|ZP_01904977.1| bifunctional deaminase-reductase-like protein [Roseobacter sp.
           AzwK-3b]
 gi|149809630|gb|EDM69485.1| bifunctional deaminase-reductase-like protein [Roseobacter sp.
           AzwK-3b]
          Length = 275

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 93/210 (44%), Gaps = 16/210 (7%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
                +I  S D  I      +  ++G      +H +RA  D +++G+ T L D P LT 
Sbjct: 50  PITVAQIGQSLDGRIATVTGDARDVSGPDGLAHLHRMRALVDGVVIGVRTALHDSPRLTV 109

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
           RL   +  +P RI++DP  +L  D+ +++      ++I             R   + +I 
Sbjct: 110 RL--CKGPNPARIVIDPRGRLPDDAPLLRADGTRRIVI-------QAVDRPRPAGVEVIR 160

Query: 270 CDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-- 323
            + R    D  ++L+ L  +G+++L++EGG      F+ +R +  + +  + ++IG G  
Sbjct: 161 LNDRESLLDPAQILSALRAKGLSTLMIEGGGITISRFLEARRLTRLQVAVAPLLIGAGPQ 220

Query: 324 GIPSPLEEGYLEKNFMCVRRDY-FGSDVCL 352
           G+  P     L        R +  GSDV  
Sbjct: 221 GLTMPSPTEKLSDAIRPQTRAFSLGSDVVF 250


>gi|190346556|gb|EDK38668.2| hypothetical protein PGUG_02766 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 281

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 58/212 (27%), Positives = 99/212 (46%), Gaps = 22/212 (10%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
             K+  +TL  A S D+ I  A      I+G  +K+  H +R++ DAI+VGIGTVLADDP
Sbjct: 55  PHKKPFVTLTYAQSLDSRIAAAPGIQTKISGPETKSMTHYIRSKHDAIMVGIGTVLADDP 114

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT---------ALLAPVIIV-------T 249
           +L CR       SP  ++LDP  K    S  +             LAP IIV       T
Sbjct: 115 KLNCRHEA--GKSPRPVVLDPSGKWDYKSSQLHQLVDQNTDDIKALAPYIIVRDDVDIDT 172

Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN----S 305
           +N+  V     +   +++     ++   +   L    ++S+++EGGA + +  ++     
Sbjct: 173 KNEKEVSRQGGKYIRLSLSRNRLQNWHLIFDELDKLSISSVMIEGGAQIINDLLSFQKTE 232

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
             + S+I+    + +GE G+     +G +  +
Sbjct: 233 AFIHSLIITIGPVYLGEQGVEVSPPKGVIPTD 264


>gi|32455578|ref|NP_862061.1| putative reductase [Streptomyces lividans]
 gi|28883229|gb|AAO61162.1| putative reductase [Streptomyces lividans]
 gi|89357154|gb|ABD72320.1| pQC542.16 [Streptomyces lividans]
          Length = 226

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 81/225 (36%), Gaps = 13/225 (5%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           +  R ++ L  A S D  +       + ++     ++V  +RA+SDAIL+G  T+  D+P
Sbjct: 1   MSTRPYVILSAATSVDGYLDDTSPDRLRLSNEADFDRVDQVRAESDAILIGATTMRRDNP 60

Query: 206 ELTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
            L          R+   +   P+++ +     LS D K         V+ V    + V  
Sbjct: 61  RLLVNSEQRRAQRVAAGKPEYPLKVTVTASGDLSADLKFWHHGGQKLVLTVDGAAEKVRT 120

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
                    +      D    L  L  RG+  L+VEGG  +    +   L D + L  + 
Sbjct: 121 -TLDGLADTVSVGPEFDWVLALEELGRRGIKRLMVEGGGTIHTQLMAQNLADEVHLAIAP 179

Query: 318 IVIGEGGIPSPLE----EGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           +++G+      L      G        +        V + Y  K 
Sbjct: 180 LLVGQPEAARFLGAADYPGGSTARMRVLEVRPIDDVVLIRYAPKE 224


>gi|189190852|ref|XP_001931765.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187973371|gb|EDU40870.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 242

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 26/199 (13%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
            +TL  A S D+ + +A      ++G  SK   H LR++ DAIL+G GT +AD+P L CR
Sbjct: 41  FVTLTFATSLDSQLAIAPGVQTALSGPRSKAMTHFLRSRYDAILIGAGTAIADNPSLNCR 100

Query: 211 -------LNGLQEHSPMRIILDPHFKLSLD--SKIIKTALL----APVIIVTENDDPVLA 257
                          P  +++DPH +   +  SK+++ A      AP I+ + N      
Sbjct: 101 LEGVGGYGGEGLVGQPRPVVVDPHGRWQFNEESKVLRLAKEGKGKAPYIVTSTNPPADRR 160

Query: 258 LAFRKKNINIIYCD---------CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI----N 304
                     ++                 +L  L   G+ S+++EGG  V + F+     
Sbjct: 161 ATLENVGGKFLFLGLSARDVSQAGSSWHIILDALKQEGIGSVMIEGGGFVINDFLGPSPA 220

Query: 305 SRLVDSIILYRSQIVIGEG 323
             LV+S+I+  +   +G+G
Sbjct: 221 YSLVNSVIVTIAPTWLGKG 239


>gi|317010121|gb|ADU80701.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori India7]
          Length = 344

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 76/364 (20%), Positives = 127/364 (34%), Gaps = 81/364 (22%)

Query: 14  ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR---- 68
            L  +  H  L   NPSVAC ++ K   ++          PHAEV A + A +  R    
Sbjct: 11  CLNKAWEHQTLALENPSVACMVLDKHHEILSLETHKKAKTPHAEVLAAQSALKILRPSLK 70

Query: 69  -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                         +TLEPC+ YG++P C++ +     +RVV+ 
Sbjct: 71  NDLEKLEDPKTLSDFLKTHHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIA 130

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK---RSHITLKIAVSQ 160
            ++ + +  G  L  L +  I        E K        R +E+    +   L + ++ 
Sbjct: 131 TEENEAKKGG--LARLQKACIETIICHNLENKAKDLLLPFRVMEQKGRFNLFKLALRMNG 188

Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL--QEHS 218
           D   G        ITG  S    H  RA  D ++V   T+  D+P L  R      Q  +
Sbjct: 189 DYYHG-------KITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDRFYQHKN 241

Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
           P   IL     ++  SK+                            +   + D +DL   
Sbjct: 242 PNIAILSKRP-INPHSKVFSVPNR----------------------LVNTFHDPKDLP-- 276

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYL 334
               + +G     +EGG  +  S  +    D+++L+    +IGE      + +P +   L
Sbjct: 277 ----LEKGFN--FIEGGWELFESLRDKT--DALLLHSHASMIGEAFSTFALKTPFKGRLL 328

Query: 335 EKNF 338
               
Sbjct: 329 HAQI 332


>gi|15920477|ref|NP_376146.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
           tokodaii str. 7]
 gi|15621260|dbj|BAB65255.1| 213aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 213

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 69/178 (38%), Gaps = 9/178 (5%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            +I +    + D  I         ++    K ++H+LR + DA+LVG  TV  D+P+L  
Sbjct: 3   PYIIIFSTTTIDGRIASKD-YYSELSCPYDKMRLHILRTEVDAVLVGSNTVRIDNPKLLV 61

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD----PVLALAFRKKNI 265
           +    +  +P+R+ +        +  I         II T           A   +KK +
Sbjct: 62  KY--AKGRNPVRVTISESLNFDPNLNIFSVPPD--TIIYTTYQAYLRNEDKANELKKKGV 117

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            I   +      +   L   GV  +L+EGG     +FI     D I +  S  + G G
Sbjct: 118 KIRVLEKLSSCIIAEDLYNLGVKRILIEGGGRTIWNFIKDNCFDEIRITISPKIFGNG 175


>gi|6822155|emb|CAB71026.1| riboflavin-specific deaminase / reductase [Helicobacter pylori]
          Length = 344

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 78/362 (21%), Positives = 129/362 (35%), Gaps = 77/362 (21%)

Query: 14  ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63
            L  +  H  L   NPSVAC ++ K   ++          PHAEV A + A         
Sbjct: 11  CLNKAWEHQTLALENPSVACMVLDKHHEILSLETHKKAKTPHAEVLAAQSALKILRPSLK 70

Query: 64  --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                   +     +TLEPC+ YG++P C+  +     +RVV+ 
Sbjct: 71  NDLEKLEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLDILKPKRVVIA 130

Query: 104 VDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            ++ + +  G   LQ    + II   +      + L   +  Q  + +   L + ++ D 
Sbjct: 131 TEENEAKKGGFARLQKARIETIICHNLENKAKDLLLPFRVMEQKGRFNLFKLALRMNGDY 190

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPM 220
             G        ITG  S    H  RA  D ++V   T+  D+P L  R  G   Q  +P 
Sbjct: 191 YHG-------KITGQKSVIFTHNQRAVCDTLIVSGKTIRTDNPLLDARFCGSFYQHKNPN 243

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
             IL     ++  SK+      AP  +V    DP                  +DL     
Sbjct: 244 IAILSKRP-INPHSKVFS----APNRLVNTFHDP------------------KDLP---- 276

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEK 336
             + +G     +EGG  +  S  +   +D ++L+    +I E      + +P +   L  
Sbjct: 277 --LEKGFN--FIEGGWELFESLRDK--IDVLLLHSHASMISEAFNTLALKTPFKGRLLHA 330

Query: 337 NF 338
             
Sbjct: 331 QI 332


>gi|149194180|ref|ZP_01871278.1| Riboflavin biosynthesis protein RibD [Caminibacter mediatlanticus
           TB-2]
 gi|149136133|gb|EDM24611.1| Riboflavin biosynthesis protein RibD [Caminibacter mediatlanticus
           TB-2]
          Length = 326

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 114/333 (34%), Gaps = 70/333 (21%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA-------- 63
            A+  +  +  LT  NP+V   +V K+ + +        G PHAEV  L +A        
Sbjct: 12  LAINEAWKYQFLTYPNPAVGASLVIKNKVFVS--AHKKAGSPHAEVNVLWDAFSFFHKTP 69

Query: 64  ----------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
                                 A  +VTLEPCSH G++P CA  +     + V + + DP
Sbjct: 70  KFTDSFEIHEYLIKHHNNFFNEAEMFVTLEPCSHIGKTPSCANLLKVLKPKSVTIGIKDP 129

Query: 108 DVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA 167
            ++    G++ L   GI V+ + +      +  ++    +K     L       +  G  
Sbjct: 130 -IKSHSGGVEILKNAGIEVNLLNDKRCFDLIEPFIKWSKDKFIFFKL-----AQSFNGAI 183

Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPH 227
             G   I+   S N VH +R + D +++G  TV  D P L  R   +   +P  +I   +
Sbjct: 184 TGGY--ISSEDSLNWVHKVRDKIDLLVIGGNTVRIDRPTLDARR--VNGKAPDILIYSKN 239

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
                +  + K       I                             +  L  +     
Sbjct: 240 KNFDKNIPLFKVKNRKVFI-----------------------------EDSLEEINDYKF 270

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
             +++EGG  +         VD  +   +  + 
Sbjct: 271 --IMIEGGENLYKKL--KDFVDWKVFIVTPKIF 299


>gi|296411775|ref|XP_002835605.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629391|emb|CAZ79762.1| unnamed protein product [Tuber melanosporum]
          Length = 259

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 102/234 (43%), Gaps = 27/234 (11%)

Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
           Q   +  +TL  A S D+ + +      P++G  +K+  H LR   DAILVG+GT + DD
Sbjct: 21  QHTGKFFLTLTYATSLDSHLSIPLTQF-PLSGPETKSLTHHLRTFHDAILVGVGTAVVDD 79

Query: 205 PELTCRLNGLQ-EHSPMRIILDPHFK--LSLDSKIIKTA----LLAPVIIVTEN---DDP 254
           P L  RL G      P  +ILDP F+  ++ +S++++TA     LAP + V      D  
Sbjct: 80  PGLNSRLPGTPLTRQPRPVILDPAFRWGVTRESRVVQTAKRGEGLAPYVFVRSEVEIDGD 139

Query: 255 VLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR--- 306
                  +    ++  +           L   +   G+ S++VEGG  V +  +      
Sbjct: 140 ERRGILEEVGGKVVVIETLGKRRWSWDVLSEKMRAFGLNSVMVEGGGGVINDLLAEGNLP 199

Query: 307 LVDSIILYRSQIVIGEGGI---PSPLEEGYLEKN-----FMCVRRDYFGSDVCL 352
            VDS+I+  +   +G+GG+   PS +      K      F  V     G D  +
Sbjct: 200 HVDSVIVTVAPTYLGQGGVNVSPSAVLSTADGKRTSAVKFRDVEWRILGRDAVM 253


>gi|6319629|ref|NP_009711.1| Rib7p [Saccharomyces cerevisiae S288c]
 gi|465506|sp|P33312|RIB7_YEAST RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|396753|emb|CAA50471.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|536482|emb|CAA85112.1| RIB7 [Saccharomyces cerevisiae]
 gi|642227|emb|CAA79746.1| HTP reductase [Saccharomyces cerevisiae]
 gi|45269317|gb|AAS56039.1| YBR153W [Saccharomyces cerevisiae]
 gi|285810483|tpg|DAA07268.1| TPA: Rib7p [Saccharomyces cerevisiae S288c]
          Length = 244

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 76/184 (41%), Gaps = 8/184 (4%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             +TL  A S D  +         I+   +K   H LR   D ILVG GTVLAD+P L C
Sbjct: 30  PFVTLTYAQSLDARVSRGPGVRTTISHPETKTMTHYLRHHHDGILVGSGTVLADNPGLNC 89

Query: 210 RL-NGLQEHSPMRIILDPHFKLSLDSK-----IIKTALLAPVIIVTENDDPVLALAFRKK 263
           +       +SP  II+D   K   D        IK     P+++VT              
Sbjct: 90  KWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIVVVTSEPIIKEQHVDYAI 149

Query: 264 NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHS-FINSRLVDSIILYRSQIVIG 321
                     D KKL  IL     + S++VEGGA V +   + S +V+S+I+      +G
Sbjct: 150 CPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVINQLLLRSDIVNSLIITIGSTFLG 209

Query: 322 EGGI 325
             G 
Sbjct: 210 SSGT 213


>gi|332796444|ref|YP_004457944.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
           pyrimidine1-reductase [Acidianus hospitalis W1]
 gi|332694179|gb|AEE93646.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
           pyrimidine1-reductase [Acidianus hospitalis W1]
          Length = 216

 Score =  132 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 83/189 (43%), Gaps = 5/189 (2%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++ +   ++ D  +         ++    K + H+LR++ DAI++G  TV  D+P LT 
Sbjct: 1   MYVIIFSTITIDGKLASKD-YYSELSCKYDKVRQHILRSEVDAIMIGGNTVRIDNPSLT- 58

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
            L  +   +P+R+I+       ++ KI  T     +     +++       ++K + I  
Sbjct: 59  -LKYVHGKNPIRVIISNSLNFDINYKIFNTPPQTIIYTSNNSENKDFENKIKEKGVIIRK 117

Query: 270 CDCRDLKKLLTIL-VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
            D  ++  ++  L     V  +++EGG  +  S I     D + +  S  V G  G+   
Sbjct: 118 LDNFNICNVMNDLESNFNVHKVMIEGGGKLIWSVIKENCFDELRVTISPRVFG-NGVSLA 176

Query: 329 LEEGYLEKN 337
             EG+L KN
Sbjct: 177 NGEGFLGKN 185


>gi|308183608|ref|YP_003927735.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori PeCan4]
 gi|308065793|gb|ADO07685.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori PeCan4]
          Length = 344

 Score =  132 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 76/362 (20%), Positives = 131/362 (36%), Gaps = 77/362 (21%)

Query: 14  ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63
            L  +  H  L   NPSVAC ++ K+  ++          PHAEV A + A         
Sbjct: 11  CLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRPSLK 70

Query: 64  --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                   +     +TLEPC+ YG++P C+  +     +RVV+ 
Sbjct: 71  NDLEKLEDPKILSDFLKTHHNNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIA 130

Query: 104 VDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            ++ + +  G   L+    + II   +      + L   +  Q  + +   L + ++ D 
Sbjct: 131 TEENEAKKGGLARLKKARIETIICHNLENKAKDLLLPFRIMEQKGRFNLFKLALRMNGDY 190

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPM 220
             G        ITG  S    H  RA  + ++V   T+  D+P L  R      Q  +P 
Sbjct: 191 HHG-------KITGPKSVIFTHNQRAICETLIVSGKTIRTDNPLLDARFCDSFYQNKNPN 243

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
             IL  H  +  +SK+      AP  +V    DP                  +DL     
Sbjct: 244 IAILSKH-SIDPNSKVFS----APNRLVNAFYDP------------------KDLP---- 276

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEK 336
             + +G     +EGG  +  S  +   +D+++L+    +I E      + +P +   L  
Sbjct: 277 --LEKGFN--FIEGGWELFDSLRDK--IDALLLHSHASMISEAFNAFALKTPFKGRLLHA 330

Query: 337 NF 338
             
Sbjct: 331 QI 332


>gi|237751530|ref|ZP_04582010.1| riboflavin biosynthesis protein [Helicobacter bilis ATCC 43879]
 gi|229372896|gb|EEO23287.1| riboflavin biosynthesis protein [Helicobacter bilis ATCC 43879]
          Length = 397

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 72/372 (19%), Positives = 126/372 (33%), Gaps = 102/372 (27%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA------- 63
           M  AL ++     LT  NP V  L++ D  +I        G PHAEV A +EA       
Sbjct: 1   MRIALDYAWSFQTLTLPNPCVGSLVLCDNTIIALQTHKKAGSPHAEVLACKEAFLYKITH 60

Query: 64  GEEARGA------------------------------------TAY-----------VTL 76
            E A+ A                                    TAY           VTL
Sbjct: 61  DEVAKRAVLESCKKQGLNKDNILSYLINTLQNMQDSKHIHEFITAYHSGIFHNCEFFVTL 120

Query: 77  EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI 136
           EPC+HYG++PPCA+ +     +R+++  +D   + +  G   L+   I    + +   K+
Sbjct: 121 EPCNHYGKTPPCAELLKTIAPKRIIIAHEDSTPK-ASGGANTLAHIPITHGILRDEAHKL 179

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
                  ++    +   +   +  D   G+       I+   S+   H +R  +D I++ 
Sbjct: 180 LFPFLQWQKKRNFTLFKIAHRLHGDYKNGI-------ISNEDSRIFTHNMRCIADYIIIS 232

Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV---TENDD 253
             T+  D+P L  R                           +   + P I++   T  + 
Sbjct: 233 GATLRDDNPLLDTRF---------------------SLPFYQQDSINPKILILSKTMQEK 271

Query: 254 PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN------SRL 307
            +       +N++II                      ++EGG A  +S +       +  
Sbjct: 272 DLKNYNIAHRNVSIIRSTREIPSSGFK----------IIEGGFAFLNSLLQDIETENAMP 321

Query: 308 VDSIILYRSQIV 319
           +D I+ Y +   
Sbjct: 322 IDCIMGYIAPAF 333


>gi|302423090|ref|XP_003009375.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Verticillium
           albo-atrum VaMs.102]
 gi|261352521|gb|EEY14949.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Verticillium
           albo-atrum VaMs.102]
          Length = 203

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 60/195 (30%), Positives = 92/195 (47%), Gaps = 24/195 (12%)

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFK--LSLDSKIIK 238
             H LR++ DAI VG+GTV+ADDP L CR+ G+  +  P  II+DP  +  +S  SK+++
Sbjct: 1   MTHYLRSRHDAICVGVGTVVADDPALNCRIEGVGLKKQPRPIIIDPSCRWEVSARSKVLE 60

Query: 239 TALL----APVIIVTEND-DPVLALAFRKKNINIIYCDCR-------DLKKLLTILVGRG 286
            A      AP +I +  D DP       +     I              + +L  L   G
Sbjct: 61  VARAGLGLAPYVITSRWDVDPARRGLLEQHGGKFITVQMDAAGSGRFAWRDILAALHREG 120

Query: 287 VTSLLVEGGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI---PSPLEEGYL---EKN 337
           + S+++EGG  V +S +      LVDS+I+  +   +G+GG+   P  +E+         
Sbjct: 121 LGSVMIEGGGQVINSLLAPTSHHLVDSVIVTIAPTWLGQGGVVVSPERVEQNGTAISAAR 180

Query: 338 FMCVRRDYFGSDVCL 352
              V    FG DV L
Sbjct: 181 LSHVSWHPFGEDVVL 195


>gi|210135672|ref|YP_002302111.1| riboflavin biosynthesis protein [Helicobacter pylori P12]
 gi|210133640|gb|ACJ08631.1| riboflavin biosynthesis protein [Helicobacter pylori P12]
          Length = 344

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 72/365 (19%), Positives = 130/365 (35%), Gaps = 81/365 (22%)

Query: 12  SAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR-- 68
              L  +  +  L   NPSVAC ++ K+  ++          PHAEV A + A +  R  
Sbjct: 9   EMCLNKAWEYQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPH 68

Query: 69  ---------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                                           +TLEPC+ YG++P C++ +     +RVV
Sbjct: 69  LKNDLEKLEDPKILSDFLKTRHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVV 128

Query: 102 VCVDDPDVRVSGRGLQWLSQKGII---VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAV 158
           +  ++ + +  G  L  L +  I       +      + L   +  Q  + +   L + +
Sbjct: 129 IAAEENEAKKGG--LARLQKARIETMICHNLENKAKDLLLPFRVMEQKGRFNLFKLALRM 186

Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQE 216
           + D   G        ITG  S    H  RA  D +++   T+  D+P L  R        
Sbjct: 187 NGDYHHG-------KITGQKSVIFTHNQRAICDTLIISGKTIRTDNPLLDARFCDSFYHN 239

Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276
            +P   IL  H  ++ +SK+                            +  I+ + +DL 
Sbjct: 240 KNPNIAILSKH-SINPNSKVFSAPNR----------------------LVNIFNNPKDLP 276

Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEG 332
                 + +G     +EGG  +  S  +   +D ++L+    +IGE      + +P +  
Sbjct: 277 ------LEKGFN--FIEGGWGLFESLRDK--IDVLLLHSHASMIGEAFSTLALKTPFKGR 326

Query: 333 YLEKN 337
            L   
Sbjct: 327 LLHAQ 331


>gi|307638162|gb|ADN80612.1| Diamino hydroxy phosphoribosyl amino pyrimidine
           deaminase/5-amino-6-5-phosphoribosyl amino
           uracilreductase [Helicobacter pylori 908]
 gi|325996761|gb|ADZ52166.1| Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-5-phosphoribosylamino uracil
           reductase [Helicobacter pylori 2018]
 gi|325998356|gb|ADZ50564.1| putative riboflavin specific deaminase [Helicobacter pylori 2017]
          Length = 344

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 78/364 (21%), Positives = 129/364 (35%), Gaps = 81/364 (22%)

Query: 14  ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63
            L  +  +  L   NPSVAC ++ K+  ++          PHAEV A + A         
Sbjct: 11  CLNKAWEYQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPSLK 70

Query: 64  --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                   +     +TLEPC+ YG++P C+  +     +RVV+ 
Sbjct: 71  SDLEKLEDPKILSDFLKTRHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIA 130

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK---RSHITLKIAVSQ 160
            ++ + +  G  L  L +  I        E K        R +E+    +   L + ++ 
Sbjct: 131 AEENEAKKGG--LARLQKAHIETMICCNLENKAKDLLLPFRIMEQRGRFNLFKLALRMNG 188

Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHS 218
           D   G        ITG  S    H  RA  D +++   T+  D+P L  R      Q  +
Sbjct: 189 DYHHG-------KITGQKSVIFTHNQRAVCDTLIISGKTIRTDNPLLDTRFCDNFYQGKN 241

Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
           P   IL     +S  SK+      AP  +V    DP                  +DL   
Sbjct: 242 PNIAILSKR-SISPHSKVFS----APNRLVNTFHDP------------------KDLS-- 276

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYL 334
               + +G     +EGG  +  S  +   +D ++L+    +IGE      + +P +   L
Sbjct: 277 ----LNKGFN--FIEGGWGLFESLRDK--IDILLLHSHASMIGEAFNTLALKTPFKGRLL 328

Query: 335 EKNF 338
               
Sbjct: 329 HAQI 332


>gi|146418142|ref|XP_001485037.1| hypothetical protein PGUG_02766 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 281

 Score =  131 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 58/212 (27%), Positives = 101/212 (47%), Gaps = 22/212 (10%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
             K+  +TL  A   D+ I  A      I+G  +K+  H +R++ DAI+VGIGTVLADDP
Sbjct: 55  PHKKPFVTLTYAQLLDSRIAAAPGIQTKISGPETKSMTHYIRSKHDAIMVGIGTVLADDP 114

Query: 206 ELTCRLNGLQEHSPMRIILDPHF----KLSLDSKIIKTA-----LLAPVIIV-------T 249
           +L CR       SP  ++LDP      KLS   +++         LAP IIV       T
Sbjct: 115 KLNCRHEA--GKSPRPVVLDPSGKWDYKLSQLHQLVDQNTDDIKALAPYIIVRDDVDIDT 172

Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI----NS 305
           +N+  V     +   ++++    ++   +   L    ++S+++EGGA + +  +      
Sbjct: 173 KNEKEVSRQGGKYIRLSLLRNRLQNWHLIFDELDKLSISSVMIEGGAQIINDLLLFQKTE 232

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
             + S+I+    + +GE G+     +G +  +
Sbjct: 233 AFIHSLIITIGPVYLGEQGVEVSPPKGVIPTD 264


>gi|330833888|ref|YP_004408616.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Metallosphaera
           cuprina Ar-4]
 gi|329566027|gb|AEB94132.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Metallosphaera
           cuprina Ar-4]
          Length = 207

 Score =  131 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/214 (23%), Positives = 93/214 (43%), Gaps = 15/214 (7%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++ +   ++ D  +         ++    K + H+LR++ DAI++G  T   D+P LT 
Sbjct: 3   PYVIISSTMTIDGRLASKD-SYSELSCKYDKIRQHVLRSEVDAIMIGANTARIDNPSLT- 60

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
            L  ++  +P+R+I+  +  L  + +I     L   II T+N++P L    + +   +  
Sbjct: 61  -LKYVKGTNPIRVIVTGNGHLDQNLRIFSVPPL--TIIYTKNENPQLENLTKNQ---VKI 114

Query: 270 CDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
               ++  +L  L     V  ++VEGG  +  S I    VD I L  S  + G  G+   
Sbjct: 115 RKFLNICNILEDLYENFSVKKVMVEGGGKLNWSLIKENCVDEIRLTISPRIFGS-GVSVF 173

Query: 329 LEEGY---LEKNFMCVRRD--YFGSDVCLEYIGK 357
             EG+   L  +F            ++ L YI +
Sbjct: 174 DGEGFSGHLSPSFKLKEAYICQCKEEIVLTYIKR 207


>gi|149239544|ref|XP_001525648.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146451141|gb|EDK45397.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 245

 Score =  131 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 102/206 (49%), Gaps = 19/206 (9%)

Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
           FL +YL  +      +TL  A S D+ I         ++   +K   H LR++ DAILVG
Sbjct: 13  FLESYLPAEKHNGPFVTLTYAQSLDSRIAAKVGVQTKLSHLETKTMTHYLRSKHDAILVG 72

Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL-DSKII----KTALLAPVIIVTE- 250
           + TV ADDP+L CR        P  ++LDP+ K +  +S++         LAP+IIV E 
Sbjct: 73  VNTVQADDPKLNCRYGNELRIRP--VVLDPYRKWNFANSQLCKICKDGKGLAPIIIVDEL 130

Query: 251 --------NDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAH 300
                   ++D     A   + I +   + R  + + +   L   G+ +++VEGGA + +
Sbjct: 131 VQLGESKNDEDATELNALGGEYIALPLIEKRMSNWQLIFDKLYKNGLKTIMVEGGATIIN 190

Query: 301 S-FINSRLVDSIILYRSQIVIGEGGI 325
              +N  LVDS+I+  + + +G+ G+
Sbjct: 191 ELLLNRDLVDSLIITVAPVFLGKEGV 216


>gi|151946542|gb|EDN64764.1| diaminohydroxyphoshoribosylaminopyrimidine deaminase [Saccharomyces
           cerevisiae YJM789]
          Length = 244

 Score =  131 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 76/184 (41%), Gaps = 8/184 (4%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             +TL  A S D  +         I+   +K   H LR   D IL+G GTVLAD+P L C
Sbjct: 30  PFVTLTYAQSLDARVSKGPGVRTIISHPETKTMTHYLRHHHDGILIGSGTVLADNPGLNC 89

Query: 210 RL-NGLQEHSPMRIILDPHFKLSLDSK-----IIKTALLAPVIIVTENDDPVLALAFRKK 263
           +       +SP  II+D   K   D        IK     P+++VT              
Sbjct: 90  KWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIVVVTSEPIIKEQHVDYAI 149

Query: 264 NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHS-FINSRLVDSIILYRSQIVIG 321
                     D KKL  IL     + S++VEGGA V +   + S +V+S+I+      +G
Sbjct: 150 CPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVINQLLLRSDIVNSLIITIGSTFLG 209

Query: 322 EGGI 325
             G 
Sbjct: 210 SSGT 213


>gi|159038150|ref|YP_001537403.1| deaminase-reductase domain-containing protein [Salinispora
           arenicola CNS-205]
 gi|157916985|gb|ABV98412.1| bifunctional deaminase-reductase domain protein [Salinispora
           arenicola CNS-205]
          Length = 230

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 86/227 (37%), Gaps = 12/227 (5%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           +  R ++ L  AVS D  I  A    + ++     ++V  +RA  DAILVG  T+  DDP
Sbjct: 1   MSDRPYVLLSCAVSVDGYIDDATEDRLLLSNAADVDRVDEVRAGCDAILVGAATIRKDDP 60

Query: 206 ELTCRLNGLQE--------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
            L  R    ++         +P++  +     L   ++         V+    +      
Sbjct: 61  RLLVRSQARRDTRIHRGRPATPLKATITGRGDLDPTAQFFTAGDSTKVVYTATSALDKTC 120

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
                    +   +  DL ++L  L  RGV  L+VEGG ++   F+ + L D + L  + 
Sbjct: 121 ETVGTVADVVDAGEPVDLDRVLADLASRGVARLMVEGGGSMHTMFLTAGLADELHLVVAP 180

Query: 318 IVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
             +G+   P  + +G      +              V L Y   + C
Sbjct: 181 FFVGDSRAPRFVYDGCFPWSPQGRARLADVVKIEDLVLLRYALSDRC 227


>gi|167898152|ref|ZP_02485554.1| riboflavin biosynthesis protein [Burkholderia pseudomallei 7894]
          Length = 90

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/87 (52%), Positives = 55/87 (63%)

Query: 3  VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           S  D   M+ ALR +   +  T  NP V C+I +    +G G     G PHAEV AL E
Sbjct: 4  FSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALRE 63

Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCA 89
          AGE ARGATAYVTLEPC+H+GR+PPCA
Sbjct: 64 AGERARGATAYVTLEPCAHFGRTPPCA 90


>gi|29826479|ref|NP_828785.1| putative riboflavin-specific deaminase/reductase [Streptomyces
           avermitilis MA-4680]
 gi|29611277|dbj|BAC75320.1| putative riboflavin-specific deaminase/reductase [Streptomyces
           avermitilis MA-4680]
          Length = 226

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 86/225 (38%), Gaps = 13/225 (5%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           +  R ++ L  A+S D  +       + ++     ++V  +RA+SDAIL+G  T+  D+P
Sbjct: 1   MTARPYVLLSAAMSVDGYLDDTSPERLRLSNAEDFDRVDQVRAESDAILIGANTMRRDNP 60

Query: 206 ELTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
            L          R+   +   P+++ +     LS D           V+ V    + V A
Sbjct: 61  RLLVNSDERRAQRVADGKPEYPLKVTVTQSGDLSADLNFWHHGGDKLVVTVDSAVEKVRA 120

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
                 ++ +      D   +L  L  RGV  L+VEGG  +    + + L D + L  + 
Sbjct: 121 TLGDLADV-VGVGPELDWGLVLDELGRRGVGRLMVEGGGTIHTQLMAANLADEVHLAIAP 179

Query: 318 IVIGEGGIPSPLE----EGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           +++G+      L      G        +        V + Y  K 
Sbjct: 180 LLVGQPEAAQFLGAADYPGGSTARMKVLEVRAIDDVVFVRYAPKE 224


>gi|15612463|ref|NP_224116.1| putative riboflavin-specific deaminase [Helicobacter pylori J99]
 gi|4156003|gb|AAD06964.1| putative RIBOFLAVIN-SPECIFIC DEAMINASE [Helicobacter pylori J99]
          Length = 344

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 75/364 (20%), Positives = 129/364 (35%), Gaps = 81/364 (22%)

Query: 14  ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63
            L  +  +  L   NPSVAC ++ K+  ++          PHAEV A + A         
Sbjct: 11  CLNKAWEYQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPHLK 70

Query: 64  --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                   +     +TLEPC+ YG++P C+  +     +RV++ 
Sbjct: 71  SDLEKLEDPKILSDFLKTRHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVIIA 130

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK---RSHITLKIAVSQ 160
            ++ + +  G  L+ L +  I        E K        R +E+    +   L + ++ 
Sbjct: 131 TEENEAKKGG--LERLQKAHIETIICHNLENKAKNLLLPFRVMEQKGRFNLFKLALRMNG 188

Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHS 218
           D   G        ITG  S    H  RA  D +++   T+  D+P L  R         +
Sbjct: 189 DYHHG-------KITGQKSVIFTHNQRAVCDTLIISGKTIRTDNPLLDARFCDSFYHNKN 241

Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
           P   IL     +S  SK+      AP  +V    DP                  +DL   
Sbjct: 242 PNIAILSKR-SISPHSKVF----FAPNRLVNTFHDP------------------KDLP-- 276

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYL 334
               + +G     +EGG  +     +   +D+++L+    +IGE      + +P +   L
Sbjct: 277 ----LEKGFN--FIEGGWGLFEGLRDK--IDALLLHSHASMIGEAFNTLALKTPFKGRLL 328

Query: 335 EKNF 338
               
Sbjct: 329 HAQI 332


>gi|323349752|gb|EGA83967.1| Rib7p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 244

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 76/184 (41%), Gaps = 8/184 (4%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             +TL  A S D  +         I+   +K   H LR   D ILVG GTVLAD+P L C
Sbjct: 30  PFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDGILVGSGTVLADNPGLNC 89

Query: 210 RL-NGLQEHSPMRIILDPHFKLSLDSK-----IIKTALLAPVIIVTENDDPVLALAFRKK 263
           +       +SP  II+D   K   D        IK     P+++VT              
Sbjct: 90  KWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIVVVTSEPIIKEQHVDYAI 149

Query: 264 NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHS-FINSRLVDSIILYRSQIVIG 321
                     D KKL  IL     + S++VEGGA V +   + S +V+S+I+      +G
Sbjct: 150 CPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVINQLLLRSDIVNSLIITIGSTFLG 209

Query: 322 EGGI 325
             G 
Sbjct: 210 SSGT 213


>gi|323310096|gb|EGA63290.1| Rib7p [Saccharomyces cerevisiae FostersO]
          Length = 244

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 76/184 (41%), Gaps = 8/184 (4%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             +TL  A S D  +         I+   +K   H LR   D ILVG GTVLAD+P L C
Sbjct: 30  PFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDGILVGSGTVLADNPGLNC 89

Query: 210 RL-NGLQEHSPMRIILDPHFKLSLDSK-----IIKTALLAPVIIVTENDDPVLALAFRKK 263
           +       +SP  II+D   K   D        IK     P+++VT              
Sbjct: 90  KWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIVVVTSEPIIKEQHVDYAI 149

Query: 264 NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHS-FINSRLVDSIILYRSQIVIG 321
                     D KKL  IL     + S++VEGGA V +   + S +V+S+I+      +G
Sbjct: 150 CPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVINQLLLRSDIVNSLIITIGSTFLG 209

Query: 322 EGGI 325
             G 
Sbjct: 210 SSGT 213


>gi|256270197|gb|EEU05420.1| Rib7p [Saccharomyces cerevisiae JAY291]
 gi|290878168|emb|CBK39227.1| Rib7p [Saccharomyces cerevisiae EC1118]
 gi|323334602|gb|EGA75976.1| Rib7p [Saccharomyces cerevisiae AWRI796]
          Length = 244

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 76/184 (41%), Gaps = 8/184 (4%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             +TL  A S D  +         I+   +K   H LR   D ILVG GTVLAD+P L C
Sbjct: 30  PFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDGILVGSGTVLADNPGLNC 89

Query: 210 RL-NGLQEHSPMRIILDPHFKLSLDSK-----IIKTALLAPVIIVTENDDPVLALAFRKK 263
           +       +SP  II+D   K   D        IK     P+++VT              
Sbjct: 90  KWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIVVVTSEPIIKEQHVDYAI 149

Query: 264 NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHS-FINSRLVDSIILYRSQIVIG 321
                     D KKL  IL     + S++VEGGA V +   + S +V+S+I+      +G
Sbjct: 150 CPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVINQLLLRSDIVNSLIITIGSTFLG 209

Query: 322 EGGI 325
             G 
Sbjct: 210 SSGT 213


>gi|323338689|gb|EGA79905.1| Rib7p [Saccharomyces cerevisiae Vin13]
          Length = 244

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 76/184 (41%), Gaps = 8/184 (4%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             +TL  A S D  +         I+   +K   H LR   D ILVG GTVLAD+P L C
Sbjct: 30  PFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDGILVGSGTVLADNPGLNC 89

Query: 210 RL-NGLQEHSPMRIILDPHFKLSLDSK-----IIKTALLAPVIIVTENDDPVLALAFRKK 263
           +       +SP  II+D   K   D        IK     P+++VT              
Sbjct: 90  KWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIVVVTSEPIIKEQHVDYAI 149

Query: 264 NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHS-FINSRLVDSIILYRSQIVIG 321
                     D KKL  IL     + S++VEGGA V +   + S +V+S+IJ      +G
Sbjct: 150 CPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVINQLLLRSDIVNSLIJTIGSTFLG 209

Query: 322 EGGI 325
             G 
Sbjct: 210 SSGT 213


>gi|323305972|gb|EGA59707.1| Rib7p [Saccharomyces cerevisiae FostersB]
          Length = 244

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 76/184 (41%), Gaps = 8/184 (4%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             +TL  A S D  +         I+   +K   H LR   D ILVG GTVLAD+P L C
Sbjct: 30  PFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDGILVGSGTVLADNPGLNC 89

Query: 210 RL-NGLQEHSPMRIILDPHFKLSLDSK-----IIKTALLAPVIIVTENDDPVLALAFRKK 263
           +       +SP  II+D   K   D        IK     P+++VT              
Sbjct: 90  KWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIVVVTSEPIIKEQHVDYAI 149

Query: 264 NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHS-FINSRLVDSIILYRSQIVIG 321
                     D KKL  IL     + S++VEGGA V +   + S +V+S+IJ      +G
Sbjct: 150 CPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVINQLLLRSDIVNSLIJTIGSTFLG 209

Query: 322 EGGI 325
             G 
Sbjct: 210 SSGT 213


>gi|162454006|ref|YP_001616373.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sorangium
           cellulosum 'So ce 56']
 gi|161164588|emb|CAN95893.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sorangium
           cellulosum 'So ce 56']
          Length = 229

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 89/222 (40%), Gaps = 19/222 (8%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
            R  +TL  A + D  I       V ++        H  RA+ DA+LVGI TV+ DDP L
Sbjct: 4   PRPRVTLHFAQTLDGRIAARD-QRVMLSTPAGMVCAHRARAEHDAVLVGIRTVVIDDPRL 62

Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIK-----TALLAPVIIVTENDDPVLAL--AF 260
           T R  G +   PMR++L     +   +++++           V++         A     
Sbjct: 63  TLR--GCEGRQPMRVVLASALGVPEGARLLQPPGSGQPAGGRVVVFGAAGRAPRAAQAWL 120

Query: 261 RKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
            ++   +I           L   L  L  RGV  LLVEGG AV  SF+ +RL D   +  
Sbjct: 121 EERGAEVIVVPADASGLVSLPHALAELHARGVRRLLVEGGGAVLTSFLRARLADRAEVEI 180

Query: 316 SQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCLE 353
           +   +G+  IP+    G        +      +  G +V L 
Sbjct: 181 APRFLGDTAIPAVGALGEAPLASAIDLREPAVELLGGNVLLR 222


>gi|207347626|gb|EDZ73736.1| YBR153Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 218

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/184 (30%), Positives = 76/184 (41%), Gaps = 8/184 (4%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             +TL  A S D  +         I+   +K   H LR   D ILVG GTVLAD+P L C
Sbjct: 30  PFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDGILVGSGTVLADNPGLNC 89

Query: 210 RL-NGLQEHSPMRIILDPHFKLSLDSK-----IIKTALLAPVIIVTENDDPVLALAFRKK 263
           +       +SP  II+D   K   D        IK     P+++VT              
Sbjct: 90  KWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIVVVTSEPIIKEQHVDYAI 149

Query: 264 NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHS-FINSRLVDSIILYRSQIVIG 321
                     D KKL  IL     + S++VEGGA V +   + S +V+S+IL      +G
Sbjct: 150 CPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVINQLLLRSDIVNSLILTIGSTFLG 209

Query: 322 EGGI 325
             G 
Sbjct: 210 SSGT 213


>gi|190408694|gb|EDV11959.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Saccharomyces
           cerevisiae RM11-1a]
 gi|323356098|gb|EGA87903.1| Rib7p [Saccharomyces cerevisiae VL3]
          Length = 244

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/184 (30%), Positives = 76/184 (41%), Gaps = 8/184 (4%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             +TL  A S D  +         I+   +K   H LR   D ILVG GTVLAD+P L C
Sbjct: 30  PFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDGILVGSGTVLADNPGLNC 89

Query: 210 RL-NGLQEHSPMRIILDPHFKLSLDSK-----IIKTALLAPVIIVTENDDPVLALAFRKK 263
           +       +SP  II+D   K   D        IK     P+++VT              
Sbjct: 90  KWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIVVVTSEPIIKEQHVDYAI 149

Query: 264 NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHS-FINSRLVDSIILYRSQIVIG 321
                     D KKL  IL     + S++VEGGA V +   + S +V+S+IL      +G
Sbjct: 150 CPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVINQLLLRSDIVNSLILTIGSTFLG 209

Query: 322 EGGI 325
             G 
Sbjct: 210 SSGT 213


>gi|197106417|ref|YP_002131794.1| riboflavin biosynthesis protein RibD [Phenylobacterium zucineum
           HLK1]
 gi|196479837|gb|ACG79365.1| riboflavin biosynthesis protein RibD [Phenylobacterium zucineum
           HLK1]
          Length = 143

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 56/130 (43%), Positives = 74/130 (56%), Gaps = 1/130 (0%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           M  A+  +R  VG T  NP+V C+I+KDG V+G   T  GG PHAE  AL +AGE ARGA
Sbjct: 1   MRRAIALARPQVGRTGENPAVGCVILKDGRVLGEAATGDGGRPHAEELALAQAGEAARGA 60

Query: 71  TAYVTLEPCSHYGRSPP-CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           TA+VTLEPC+        C++ +   G+ RVVV   DP V  +G G   L   GI+ D+ 
Sbjct: 61  TAFVTLEPCAERSSGAASCSERLAAAGMSRVVVACADPSVFAAGGGAARLRAAGIVFDQG 120

Query: 130 MESEGKIFLH 139
           +       L+
Sbjct: 121 LLEAEAAPLY 130


>gi|299142759|ref|ZP_07035888.1| riboflavin biosynthesis protein RibD [Prevotella oris C735]
 gi|298575788|gb|EFI47665.1| riboflavin biosynthesis protein RibD [Prevotella oris C735]
          Length = 116

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/113 (39%), Positives = 56/113 (49%), Gaps = 4/113 (3%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
             +M   L+ +         NP V  +IV    +IG G     G  HAEV A      E 
Sbjct: 4   EYYMKRCLQLAENGRQNAKLNPMVGAVIVAHDRIIGEGYHVRCGEGHAEVNAFASVRPED 63

Query: 68  R----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
                 AT YV+LEPCSHYG++PPCA  II  GI+R V    DP  +V GRG+
Sbjct: 64  EKLLPEATIYVSLEPCSHYGKTPPCADLIISKGIKRCVCGCVDPFAKVQGRGI 116


>gi|114571043|ref|YP_757723.1| riboflavin biosynthesis protein RibD [Maricaulis maris MCS10]
 gi|114341505|gb|ABI66785.1| riboflavin biosynthesis protein RibD [Maricaulis maris MCS10]
          Length = 207

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/149 (43%), Positives = 90/149 (60%), Gaps = 1/149 (0%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
            DAR+M  A+  +R   G T+ NP+V C++V+DG +I  G T  GG PHAE  AL+ AG 
Sbjct: 5   DDARYMDLAVALARAQQGRTAPNPAVGCVLVRDGRIIATGATQDGGRPHAERVALDAAGA 64

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
           EA GATAYVTLEPC+H+G++PPCA  +I+ GI R V+   D   +VSGRGL  L+  G  
Sbjct: 65  EAAGATAYVTLEPCAHHGQTPPCADGLIQAGIERAVIACGDRFEQVSGRGLAILAAAGMT 124

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHIT 153
           +   + E++       + +R      HI 
Sbjct: 125 VETGLRETDATSLYAGFFSRLASGLPHIM 153


>gi|108563832|ref|YP_628148.1| riboflavin biosynthesis protein [Helicobacter pylori HPAG1]
 gi|107837605|gb|ABF85474.1| riboflavin biosynthesis protein [Helicobacter pylori HPAG1]
          Length = 344

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 116/337 (34%), Gaps = 80/337 (23%)

Query: 12  SAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR-- 68
              L  +  +  L   NPSVAC ++ K+  ++          PHAEV A + A +  R  
Sbjct: 9   EMCLNKAWEYQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRPS 68

Query: 69  ---------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                                           +TLEPC+ YG++P C++ +     +RVV
Sbjct: 69  LKNDLEKLEDPKTLSDFLKTRHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVV 128

Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK---RSHITLKIAV 158
           +  ++ + +  G  L  L +  I        E K        R +E+    +   L + +
Sbjct: 129 IAAEENEAKKGG--LARLQKAHIETMICRNLENKAKDLLLPFRIMEQKGRFNLFKLALRM 186

Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQE 216
           + D   G        ITG  S    H  RA  D ++V   T+  D+P L  R      Q 
Sbjct: 187 NGDYYHG-------KITGPKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDTRFCDSFYQN 239

Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276
            +P   IL     ++  SK+  T                         +   + D +DL 
Sbjct: 240 KNPNIAIL-SKCSINPSSKVFSTPNR----------------------LVNTFHDPKDLP 276

Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
                 + +G     +EGG  +        L D I +
Sbjct: 277 ------LEKGFN--FIEGGWGLF-----EGLRDKIDV 300


>gi|146302806|ref|YP_001190122.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Metallosphaera
           sedula DSM 5348]
 gi|145701056|gb|ABP94198.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Metallosphaera sedula DSM 5348]
          Length = 206

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 80/211 (37%), Gaps = 15/211 (7%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            +I +   ++ D  I         ++    K + H+LRAQ DA+++G  T   D+P LT 
Sbjct: 3   PYIIISSTMTIDGKIAAKD-SFSELSCRYDKIRQHMLRAQVDAVMIGARTARVDNPRLT- 60

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
            L      +P+R+I+     L    KI         ++ T N    L     KK + +  
Sbjct: 61  -LKYYTGKNPIRVIVTNSGDLDPGLKIFNIPPS--TVVYTRNLSDSLK-ELTKKGVYVRT 116

Query: 270 CDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
                L   +  L     V +++VEGG  +  S +    VD + +  S  V G  G    
Sbjct: 117 FST--LCDAMADLYKTFSVRTVMVEGGGKLNWSLMKEGCVDEVRVTVSPRVFGS-GTSIF 173

Query: 329 LEEGYLEKN-----FMCVRRDYFGSDVCLEY 354
             +G+              R   G ++ L Y
Sbjct: 174 DGDGFPGSMSPTLKLHSAYRCQCGEEIVLIY 204


>gi|254442809|ref|ZP_05056285.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198257117|gb|EDY81425.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 151

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 57/147 (38%), Positives = 75/147 (51%), Gaps = 3/147 (2%)

Query: 1   MPVSSFDARFMSAALRFSRWHVG-LTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           M     D  FM AA+  +       TS NP V  +IV+DG ++ +G     G PHAE QA
Sbjct: 1   MEQIQRDESFMRAAVCEAVRGDAVKTSPNPRVGAVIVEDGEIVAKGHFERDGGPHAERQA 60

Query: 60  LEEAGEEAR-GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           LE  G + + GA  YVTLEPCS  GR+  C   I+E GIRRVVV   DP     G G++ 
Sbjct: 61  LEALGRKPKEGAVIYVTLEPCSTQGRTGACTDAILEAGIRRVVVGASDPTEEHRGNGVRV 120

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTR 144
           L   G+ +V  +++ E       Y   
Sbjct: 121 LEAAGVEVVSGVLDLECSALNPGYRGH 147


>gi|50550031|ref|XP_502488.1| YALI0D06501p [Yarrowia lipolytica]
 gi|49648356|emb|CAG80676.1| YALI0D06501p [Yarrowia lipolytica]
          Length = 250

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 65/214 (30%), Positives = 94/214 (43%), Gaps = 18/214 (8%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
           H+TL  A S D+ I         I+   +K   H LRA  D ILVG+ T + D+P L C+
Sbjct: 29  HVTLTYAQSLDSRIAAKRDERTTISSEETKRMTHWLRAHHDGILVGVQTAIIDNPGLHCK 88

Query: 211 L-----NGLQEHSPMRIILDPHFK-----LSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
                   LQE SP  IILDP F+       L          AP+++     +   A  F
Sbjct: 89  SFTDEDYKLQEQSPQPIILDPQFRWEFKATKLACNAAHNGYKAPIVVTKSGYEIDTAKKF 148

Query: 261 RKKNIN-----IIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILY 314
           +KK I      ++  D    K +   L    G+ S++VEGGA V  S +     DS+++ 
Sbjct: 149 KKKGIEDFGGKVLMLDDFSWKSIFDALHNDCGLKSIMVEGGAHVIESMLEVGAFDSLVVT 208

Query: 315 RSQIVIGEGGIP-SPLEEGYLEK-NFMCVRRDYF 346
              + +G  G+  SP E   L+K  +    RD  
Sbjct: 209 VGPVFLGRAGLEVSPKESVILDKVKWAAAERDSV 242


>gi|317013277|gb|ADU83885.1| riboflavin biosynthesis protein [Helicobacter pylori Lithuania75]
          Length = 344

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 73/364 (20%), Positives = 128/364 (35%), Gaps = 81/364 (22%)

Query: 14  ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR---- 68
            L  +  +  L   NPSVAC ++ K   ++          PHAEV A + A +  R    
Sbjct: 11  CLNKAWEYQTLALENPSVACMVLDKHHEILSLETHKKAKTPHAEVLAAQSALKILRPHLK 70

Query: 69  -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                         +TLEPC+ YG++P C++ +     +RVV+ 
Sbjct: 71  NDLEKLEDPKTLSDFLKKHHNNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIA 130

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK---RSHITLKIAVSQ 160
            ++ + +  G  L  L +  I        E K        R +E+    +   L + ++ 
Sbjct: 131 AEENEAKKGG--LARLQKARIETMICRNLENKAKDLLLPFRVMEQKGRFNLFKLALRMNG 188

Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL--QEHS 218
           D   G        ITG  S    H  RA  D +++   T+  D+P L  R         +
Sbjct: 189 DYYHG-------KITGQKSVIFTHNQRAICDTLIISGKTIRTDNPLLDSRFCDRFYHNKN 241

Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
           P   IL     ++  SK+                            +  I+ + +DL   
Sbjct: 242 PNIAILSKR-SINPHSKVFSAPNR----------------------LVNIFNNPKDLP-- 276

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYL 334
               + +G     +EGG  +  S  +   +D+++L+    +IGE      + +P +   L
Sbjct: 277 ----LEKGFN--FIEGGWGLFESLRDK--IDALLLHSHASMIGEAFSVFALKTPFKGRLL 328

Query: 335 EKNF 338
               
Sbjct: 329 HAQI 332


>gi|315497946|ref|YP_004086750.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Asticcacaulis excentricus CB 48]
 gi|315415958|gb|ADU12599.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           [Asticcacaulis excentricus CB 48]
          Length = 147

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 53/137 (38%), Positives = 73/137 (53%), Gaps = 2/137 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           D+R M+ A+  +   +G T  NP V C+IVKDG+VI    T  GG PHAE  AL +    
Sbjct: 3   DSRHMARAIAMATAQLGRTVPNPPVGCVIVKDGVVIAEAATGDGGRPHAEEAALAQLDHR 62

Query: 67  ARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
           A GATAYVTLEPC         C+Q ++E G+ RVV    DP    S  G+  +S+ G+ 
Sbjct: 63  AEGATAYVTLEPCGARSHGGLSCSQRLVEAGVSRVVFACHDPSPFASHLGIICMSEAGLK 122

Query: 125 IVDRMMESEGKIFLHAY 141
           +   +M  E    +  +
Sbjct: 123 VETGLMADEAAALIADF 139


>gi|308185276|ref|YP_003929409.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori SJM180]
 gi|308061196|gb|ADO03092.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori SJM180]
          Length = 344

 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 76/362 (20%), Positives = 131/362 (36%), Gaps = 77/362 (21%)

Query: 14  ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR---- 68
            L  +  +  L   NPSVAC ++ K+  ++          PHAEV A + A +  R    
Sbjct: 11  CLNKAWEYQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPSLK 70

Query: 69  -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                         +TLEPC+ YG++P C++ +     +RVV+ 
Sbjct: 71  NDLEKLEDPKTLSDFLKTHHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIA 130

Query: 104 VDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            ++ + +  G   LQ    + II   +      + L   +  Q  + +   L + ++ D 
Sbjct: 131 TEENEAKKGGLARLQKARIETIICRNLENKAKDLLLPFRVMEQKGRFNLFKLALRMNGDY 190

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPM 220
             G        ITG  S    H  RA  D +++   T+  D+P L  R         +P 
Sbjct: 191 HHG-------KITGQKSVIFTHNQRAVCDTLIISGKTIRTDNPLLDARFCDSFYHNKNPN 243

Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
             IL     +S  SK+      AP  +V    DP                  +DL     
Sbjct: 244 IAILSKR-SISPSSKVF----FAPNRLVNTFHDP------------------KDLP---- 276

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEK 336
             + +G     +EGG  +  S  +   +D+++L+    +I E      + +P +   L  
Sbjct: 277 --LEKGFN--FIEGGWGLFESLRDK--IDALLLHSHASMISEAFNTLALKTPFKGRLLHA 330

Query: 337 NF 338
             
Sbjct: 331 QI 332


>gi|268323388|emb|CBH36976.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [uncultured archaeon]
          Length = 224

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 87/174 (50%), Gaps = 11/174 (6%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
            +R  + +  A+S D  I         I+G + +++V  L+A SDAI+VGIGTVLAD+P 
Sbjct: 1   MERPFVFINAAMSADGKISTVARVQTRISGRVDRDRVDALKAGSDAIMVGIGTVLADNPS 60

Query: 207 LTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           LT         R    ++ +P+RI++D   +  +D++++       +I V++    V  +
Sbjct: 61  LTVKSRKRQEDRKQAERDENPIRIVVDSTARTPIDAEMLSKGSGKRIIAVSKRAI-VADV 119

Query: 259 AFRKKNINIIYCDCRDLKKLLTIL--VGRGVTSLLVEGGAAVAHSFINSRLVDS 310
               +   II C   ++     +     RGV  L+VEGGA +  S ++  LVD 
Sbjct: 120 DRLGEKAEIIVCGREEVDLKKLLDLLWQRGVKRLMVEGGATLNWSLVSQGLVDE 173


>gi|145595083|ref|YP_001159380.1| deaminase-reductase domain-containing protein [Salinispora tropica
           CNB-440]
 gi|145304420|gb|ABP55002.1| bifunctional deaminase-reductase domain protein [Salinispora
           tropica CNB-440]
          Length = 229

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 91/227 (40%), Gaps = 12/227 (5%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           + +R ++ L  A S D  I  A    + ++     +++  +RA  DAILVG GTV  DDP
Sbjct: 1   MTERPYVLLSCATSLDGYIDDATGQRLLLSNDADLDRIDEVRAGCDAILVGAGTVRRDDP 60

Query: 206 ELTCRLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
            L  R    +          SP R+ +     L   +++  T   A +I    +    + 
Sbjct: 61  RLLVRSAARRAERVARGLAASPTRVTVTGCGDLDPGARVFTTGATARLIYCATSGVEKVR 120

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
                    +   +  DL  +L  L  RG+  LLVEGGA++   F+ S L D + L  + 
Sbjct: 121 ERLGDIATVVHSGEPVDLAAVLADLAARGIGRLLVEGGASMHTQFLASGLADELHLVVAP 180

Query: 318 IVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYIGKNLC 360
             +G+G  P  + +G            V     G    + Y   + C
Sbjct: 181 FFVGDGRAPRFVRDGSFPWHAGHRAQIVEVRQIGDVALVRYALSDRC 227


>gi|317014921|gb|ADU82357.1| riboflavin biosynthesis protein [Helicobacter pylori Gambia94/24]
          Length = 344

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 74/364 (20%), Positives = 130/364 (35%), Gaps = 81/364 (22%)

Query: 14  ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63
            L  +  +  L   NPSVAC ++ K+  ++          PHAEV A + A         
Sbjct: 11  CLNKAWEYQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPHLK 70

Query: 64  --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                   +     +TLEPC+ YG++P C++ +     +R V+ 
Sbjct: 71  NDLEKLEDPKILSDFLKTRHDNAFKDCVFLITLEPCNSYGKTPACSELLEILKPKRAVIA 130

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK---RSHITLKIAVSQ 160
            ++ + +  G  L  L +  I        E K        R +E+    +   L + ++ 
Sbjct: 131 AEENEAKKGG--LARLQKAHIETIICRNLENKAKNLLLPFRIMEQKGRFNLFKLALRMNG 188

Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHS 218
           D   G        ITG  S    H  RA  D +++   T+  D+P L  R      Q  +
Sbjct: 189 DYYHG-------KITGQKSVIFTHNQRAVCDTLIISGKTIRTDNPLLDTRFCDNFYQGKN 241

Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
           P   IL  H  ++  SK+       P  +V   ++P                  +DL   
Sbjct: 242 PNIAILSKH-SINPHSKVFS----VPNRLVNTFNNP------------------KDLP-- 276

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYL 334
               + +G     +EGG  +  S  +   +D+++L+    +I E      + +P +   L
Sbjct: 277 ----LEKGFN--FIEGGWGLFESLRDK--IDALLLHSHASMISEAFNTLALKTPFKGRLL 328

Query: 335 EKNF 338
               
Sbjct: 329 HAQI 332


>gi|302552478|ref|ZP_07304820.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Streptomyces
           viridochromogenes DSM 40736]
 gi|302470096|gb|EFL33189.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Streptomyces
           viridochromogenes DSM 40736]
          Length = 189

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 11/189 (5%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
               ++ L  AVS D  +   G   + ++     ++V  +RA  DAILVG GT+ AD+P 
Sbjct: 1   MPHPYVLLSAAVSLDGYLDDTGPERLLLSSPADFDRVDEVRASVDAILVGAGTIRADNPR 60

Query: 207 LTCRLNGLQE--------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           L     G +           P+++ +     L  +++   T      ++ T ++    A 
Sbjct: 61  LLVNSPGRRAARTAAGLPEYPLKVTVSGTGDLDPEARFWHTGGEK--VLYTTDEGAERAR 118

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
           A       +      D + LLT L   RGV  L+VEGG  +    +   L D + L  + 
Sbjct: 119 ARGLATDVVPLGAGLDWRSLLTHLHDVRGVRRLMVEGGGLIHTQLLTQGLADELQLVLAP 178

Query: 318 IVIGEGGIP 326
           + +G+   P
Sbjct: 179 LFVGDPAAP 187


>gi|213401993|ref|XP_002171769.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Schizosaccharomyces japonicus yFS275]
 gi|211999816|gb|EEB05476.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Schizosaccharomyces japonicus yFS275]
          Length = 244

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 60/218 (27%), Positives = 89/218 (40%), Gaps = 28/218 (12%)

Query: 165 GMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ------EHS 218
           G    G + ++G  S    H LRA +D I+VG  TV  D+P LT RL          +  
Sbjct: 30  GKPNPGQLVLSGHESFVMTHKLRAHADGIMVGSTTVRVDNPSLTARLPDPAHDTLPLDQQ 89

Query: 219 PMRIILDPHFKLSLDS-KIIKTALL----APVIIV---TENDDPVLALAFRKKNINIIYC 270
           P  I++D    L  +S K+IK A L    AP +IV   TE+      +  +K N+     
Sbjct: 90  PRPILVDSSLSLDYESLKVIKLARLGVGKAPYVIVSPKTESAAKSDPIIEQKVNVITRVG 149

Query: 271 DCRDLKK-----------LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
               ++             L  L   G+  L+VEGGA +    + S  VD+ I+  S   
Sbjct: 150 GKLIVRATDNTVRFHEYVALDQLRELGIRRLMVEGGARLLSHALKSECVDAAIVTISPQF 209

Query: 320 IGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           +      S +       N+ C   + FG DV  E   +
Sbjct: 210 V---DPLSTIGIDAPSLNWPCKSWEMFGDDVVFEGRRR 244


>gi|256390088|ref|YP_003111652.1| bifunctional deaminase-reductase domain-containing protein
           [Catenulispora acidiphila DSM 44928]
 gi|256356314|gb|ACU69811.1| bifunctional deaminase-reductase domain protein [Catenulispora
           acidiphila DSM 44928]
          Length = 230

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 86/226 (38%), Gaps = 13/226 (5%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           + +R H+ L  A+S D  +       + ++     ++V  LRA SDAI+VG  T+  DDP
Sbjct: 1   MPERPHVILSAAMSLDGHLDDTTPDRLMLSDDADFDRVDALRAASDAIMVGAETIRRDDP 60

Query: 206 ELTCRLNGLQE--------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
            L  R    +           P+++ +     L  +++   T     V            
Sbjct: 61  RLVIRDPERRADRVRRGLAEHPVKVTVTGAGALDPEARFFTTGGHKLVYCADAAVPTQAD 120

Query: 258 LAFRKKNINIIYCDC-RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
                 +  ++      D   +L  L  RG+  L+VEGG+++   F+   L D I L  +
Sbjct: 121 RLATVPDTEVVAAGALVDFPGILADLKRRGIERLMVEGGSSLHTRFLAEDLADEIHLAIA 180

Query: 317 QIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEYIGKN 358
              +G+   P  +      +N             G  V + Y+ ++
Sbjct: 181 PFFVGDDQAPRFVRAAEFPQNARHRMTLAETRPIGDLVFVRYVIES 226


>gi|109946711|ref|YP_663939.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Helicobacter acinonychis str. Sheeba]
 gi|109713932|emb|CAJ98940.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Helicobacter acinonychis str. Sheeba]
          Length = 344

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 72/360 (20%), Positives = 128/360 (35%), Gaps = 81/360 (22%)

Query: 14  ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63
            L  +  +  L   NPSVAC ++ K+  ++   V      PHAEV A + A         
Sbjct: 11  CLNKAWEYQTLALENPSVACMVLDKNHEILSLEVHKKAKTPHAEVLATKSALKILRPSLK 70

Query: 64  --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                   +     +TLEPC+ YG++P C++ +     +RVV+ 
Sbjct: 71  IDLDQLEDPKILSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIA 130

Query: 104 VDDPDVRVSGRGLQWLSQKGII---VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
           +++   +  G  L+ L +  +       +      + L   +  +  + +   L + ++ 
Sbjct: 131 IEENKAKKGG--LERLKKAHVEALICPSLENKARDLLLPFRIMEKKGRFNLFKLALRMNG 188

Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL--QEHS 218
           D            ITG  S    H  RA    ++V   T+  D+P L  R      Q  +
Sbjct: 189 DY-------QHGKITGQKSAIFTHNQRAVCGTLIVSGKTIRTDNPLLDARFCDGFYQGKN 241

Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
           P   IL  H   +   ++      AP  +V    DP                  +DL   
Sbjct: 242 PNIAILSKHP-TNSHLRVFS----APNRLVNTFHDP------------------KDLPS- 277

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYL 334
                 +G     +EGG  +  S  +   +D ++L+    +IGE      + +P +   L
Sbjct: 278 -----DKGFN--FIEGGWELFESLRDK--IDMLLLHSHASMIGESFSSLALKTPFKGRLL 328


>gi|296446869|ref|ZP_06888806.1| bifunctional deaminase-reductase domain protein [Methylosinus
           trichosporium OB3b]
 gi|296255640|gb|EFH02730.1| bifunctional deaminase-reductase domain protein [Methylosinus
           trichosporium OB3b]
          Length = 252

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 89/212 (41%), Gaps = 16/212 (7%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           +R  +  ++  S D  I      S  I+G  + + +H +RA  DA++VG  T++ DDP+L
Sbjct: 29  ERPFVVGQVGQSLDGRIATLCGESRDISGQAALDHLHRIRAHVDAVIVGARTIVLDDPQL 88

Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
           + R   +   +P R+++DP  +L    + +       +++  E                 
Sbjct: 89  SVRR--VPGTNPARVVIDPSGRLDSRGRWLADDGARRILVTGERSS-------VSCGAET 139

Query: 268 IYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           I  +          ++  L  RG+  +LVEGGA    +F+ +  +D + +  + ++IG G
Sbjct: 140 IRLESHAGIIPPAAIVEALFSRGLKRILVEGGARTLSTFLETGHLDRLHVLVAPMIIGSG 199

Query: 324 GIPSPLEE-GYLEKNFMCVRRDYF--GSDVCL 352
                L     LE       R +   G DV  
Sbjct: 200 QAGLDLPPIAKLESALRPRVRAHLLEGGDVLF 231


>gi|217076035|gb|ACJ86376.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase [Leuconostoc
           mesenteroides]
          Length = 122

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 41/120 (34%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 7   DARFMSAALRFSRWHV-GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
           D  +M  A   +   +   T  NP V  ++VKDG VI        G  HAE+ A      
Sbjct: 3   DLTWMYLAADEAIRAMPYQTFENPRVGAVLVKDGQVITTPYHEKFGEAHAEINAFNRVKN 62

Query: 66  EAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           +    GAT YVT EP S  G+    A  I   G +RVVV   DP+   +G+G++ L   G
Sbjct: 63  KTEFLGATLYVTFEPNSPQGKVGSWAVQIQNWGQKRVVVGKIDPNPSTNGKGIKMLRSVG 122


>gi|159042516|ref|YP_001541768.1| deaminase-reductase domain-containing protein [Caldivirga
           maquilingensis IC-167]
 gi|157921351|gb|ABW02778.1| bifunctional deaminase-reductase domain protein [Caldivirga
           maquilingensis IC-167]
          Length = 211

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 53/219 (24%), Positives = 96/219 (43%), Gaps = 15/219 (6%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           +  + ++    +++ D  I      +   T      ++   R + DA +VG  TV+  D 
Sbjct: 1   MNVKPYVIAIASITMDGKIANPYIRNR-FTCRYDLERLFKARDEVDATIVGAQTVIDVDG 59

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
             T           +R+++D  F++ L+SK   +   A ++ VTE          RK  I
Sbjct: 60  TYT----PKTGKQILRVLIDGAFRVPLESKFFNSPAPA-LVAVTERAPRAKIELARKAGI 114

Query: 266 NIIYCDC-RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            ++  D   D++ LL+ L  RG+  +LVEGG AV   F +  L+D + L  +  ++G+G 
Sbjct: 115 EVMEFDKQVDVEVLLSKLTERGIKKVLVEGGGAVFWQFFSRNLIDEVRLTIAPFMMGKG- 173

Query: 325 IPSPLEEGYLE----KNFMCVRRDY--FGSDVCLEYIGK 357
             S +E   L+      F  V+      G +V + Y  +
Sbjct: 174 -TSLIEGDSLKIDQSPRFKPVKWYLCECGREVVIHYTRE 211


>gi|219113687|ref|XP_002186427.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583277|gb|ACI65897.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 386

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 81/206 (39%), Gaps = 49/206 (23%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYGGCPHAEVQAL 60
           +S+ D  F+  A+  ++  +G T  NP+V C++V   DG V+G+G     G PHAEV AL
Sbjct: 45  LSTEDEGFLRQAIECAKEGLGHTFPNPAVGCVLVNQEDGTVLGKGFHPRAGYPHAEVFAL 104

Query: 61  EEAGEEARGA-----------------------------------------------TAY 73
            +A                                                      TAY
Sbjct: 105 LQAAGHLEDGVAAGQAVVKKQNEQGAILNEVLRLSQQYTTDDGPEQLFEDTLAKSNVTAY 164

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
           VTLEPCSHYG++PPCA  +      RVVV   DP+ +V G G++ L + G+ VD    + 
Sbjct: 165 VTLEPCSHYGKTPPCAVTLALAQASRVVVGFRDPNPKVDGGGVKLLREVGVAVDMAEGAL 224

Query: 134 GKIFLHAYLTRQVEKRSHITLKIAVS 159
            +                    I  S
Sbjct: 225 SEACAELVTNFVKRITPRDETMINGS 250


>gi|317053384|ref|YP_004119151.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pantoea sp.
           At-9b]
 gi|316953123|gb|ADU72595.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pantoea sp.
           At-9b]
          Length = 144

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/115 (39%), Positives = 64/115 (55%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
           FM  AL +SR  +     NP V C+IV +G+V+ +G T   G  HAE+ A+         
Sbjct: 7   FMLLALEYSRLALPECRPNPPVGCVIVHNGVVVSKGFTQSPGHHHAEIDAISRLTFPMGE 66

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
              +VTLEPCS+ GR+P CA+ + E   R + + ++DP  R SG GL+ L   GI
Sbjct: 67  CDIFVTLEPCSYQGRTPSCARTLAEMKPRHIYIAIEDPHPRNSGEGLRILKNAGI 121


>gi|302868567|ref|YP_003837204.1| riboflavin biosynthesis protein RibD [Micromonospora aurantiaca
           ATCC 27029]
 gi|302571426|gb|ADL47628.1| riboflavin biosynthesis protein RibD [Micromonospora aurantiaca
           ATCC 27029]
          Length = 295

 Score =  126 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 66/199 (33%), Positives = 94/199 (47%), Gaps = 16/199 (8%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEE 62
           S+ +   M  A+  S   +G TS NP V C+I+ + G  +G G     G  HAEV AL  
Sbjct: 3   SNVELAAMRQAIILSSLGLGTTSPNPPVGCVILDRHGATVGAGYHRRKGEAHAEVNALSA 62

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           AG  A G TA VTLEPC+H G +P C Q +I+ GI RVV+ + DP  R    G   L+  
Sbjct: 63  AGPAALGGTAVVTLEPCNHVGVTPACRQELIDAGIARVVISLIDPTSR-GEGGAAVLTAH 121

Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
           GI +   ++  E    L  +LT    +R ++T   A+               I+      
Sbjct: 122 GIDVETNVLPDETLTVLGPWLTAIRRRRPYLTWAYALE---------GQDSQISCE---Q 169

Query: 182 QVHLLRAQSDAILVGIGTV 200
               LR+ +D +L G  T+
Sbjct: 170 LTAELRSGTDLVL-GEKTI 187


>gi|15617060|ref|NP_240273.1| riboflavin reductase [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219681812|ref|YP_002468198.1| riboflavin reductase [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|257471514|ref|ZP_05635513.1| riboflavin reductase [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|20139386|sp|P57534|RIBD2_BUCAI RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|25403629|pir||G84983 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
           [imported] - Buchnera sp. (strain APS)
 gi|10039125|dbj|BAB13159.1| riboflavin reductase [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219624655|gb|ACL30810.1| riboflavin reductase [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
          Length = 207

 Score =  126 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 84/209 (40%), Gaps = 17/209 (8%)

Query: 166 MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-------- 217
           M    S  IT   ++  V   RA+S  IL    T+L+D+P L  R   L +         
Sbjct: 1   MRNGDSKWITSKQARQDVQKFRAKSSVILSSSSTILSDNPLLNVRYKELDKKTLSIFPNK 60

Query: 218 ---SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274
               P+R+I+D   ++     IIKT     + ++    D  +      + I   +    +
Sbjct: 61  IFQHPIRVIIDSKNRVQPSHNIIKT--KGKIWLIRLKSDRKIWPKNTTQIIEKDHNKKIN 118

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
           +  LL  L    + ++ +E G+ ++   +NS L+D +I+Y +  ++G    P  +    L
Sbjct: 119 IFSLLKFLGQSEINNVWIEAGSTLSGFLLNSYLIDELIIYMAPKILGHEAKPLCMIYEKL 178

Query: 335 E----KNFMCVRRDYFGSDVCLEYIGKNL 359
           +      F        G D+ L    K +
Sbjct: 179 KISNSLQFKFKNICQIGPDIRLILSPKKI 207


>gi|85108193|ref|XP_962526.1| hypothetical protein NCU08313 [Neurospora crassa OR74A]
 gi|28924134|gb|EAA33290.1| hypothetical protein NCU08313 [Neurospora crassa OR74A]
          Length = 321

 Score =  126 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 69/259 (26%), Positives = 105/259 (40%), Gaps = 54/259 (20%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           KR  +TL  A S D+ + +A      ++G  SK   H LR++  AILVG+GT +ADDP L
Sbjct: 57  KRPFVTLTFATSLDSSLSLAPGVRTTLSGPQSKAMTHFLRSRHAAILVGVGTAVADDPGL 116

Query: 208 TCRL------------NGLQEH---SPMRIILDPHFK--LSLDSKIIKTAL----LAPVI 246
            C++            NG +E     P  IILDP  +  +S  SK+I+ A     L P I
Sbjct: 117 NCKILSPLSSSPDGVGNGKREQHPNQPRPIILDPSARWEVSEKSKVIQLARLKQGLGPFI 176

Query: 247 IVTENDDPV--------------------LALAFRKKNINIIYCDCRDLKKLLTILVGRG 286
              +  + V                    L +    K       +      +L  +   G
Sbjct: 177 FTAKKVEEVPEERRAVVEGIGGKYVRVEGLKVKGEGKGEGATSRESFAWVDVLRTIKEEG 236

Query: 287 VTSLLVEGGAAVAHSFI------NSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEK 336
           + S+++EGG +V +S +         LVDS+I+  +   +G GG+    P  +       
Sbjct: 237 LDSVMIEGGGSVINSLLSLEQAGEQELVDSVIVTIAPTWLGAGGVLVCPPRAVGRDGQPA 296

Query: 337 ---NFMCVRRDYFGSDVCL 352
                  V     G DV L
Sbjct: 297 PPVRLRDVSWQPLGEDVVL 315


>gi|310815143|ref|YP_003963107.1| riboflavin biosynthesis protein RibD [Ketogulonicigenium vulgare
           Y25]
 gi|308753878|gb|ADO41807.1| riboflavin biosynthesis protein RibD [Ketogulonicigenium vulgare
           Y25]
          Length = 324

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 78/306 (25%), Positives = 116/306 (37%), Gaps = 42/306 (13%)

Query: 22  VGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLE 77
            G T+ NP V C I+   G V+        G  HAE  A+      G   +  T  VTLE
Sbjct: 25  QGATAPNPPVGCAILDSKGAVLAVAAHQKAGSAHAEALAIAACRAAGTYDQIDTFVVTLE 84

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKI 136
           PC+H+GR+ PC   I++   RRV +   DP+ RV+G G   L   G+ + D         
Sbjct: 85  PCNHHGRTAPCTDAILQTPARRVFIGARDPNPRVAGGGTARLRAAGLAVYDWQALGMAGT 144

Query: 137 F--------LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
                    +  +  R +  R  IT+K  V     +              S    H +R 
Sbjct: 145 CTGIGADALIAPFRKRVLTGRPWITVKQVVDAGGSMIPPAGRKT-FARQSSLELAHAMRR 203

Query: 189 QSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           +++ I+ G GTVLAD P  T R L    +H    ++LD   ++   ++ +  A       
Sbjct: 204 RAEVIVTGAGTVLADWPLFTVRHLADFPDHRRALVVLDRRGRVP--TRYLTDAQTR---- 257

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
                                  D R    L   L     T +LVE G  +  + + S L
Sbjct: 258 ---------------------GFDARIATDLAEALHDPRATEVLVEAGPILTDAVLQSAL 296

Query: 308 VDSIIL 313
            D  +L
Sbjct: 297 WDQHVL 302


>gi|208435372|ref|YP_002267038.1| riboflavin biosynthesis protein [Helicobacter pylori G27]
 gi|208433301|gb|ACI28172.1| riboflavin biosynthesis protein [Helicobacter pylori G27]
          Length = 344

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 69/364 (18%), Positives = 125/364 (34%), Gaps = 81/364 (22%)

Query: 14  ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63
            L  +  +  L   NPSVAC ++ K+  ++          PHAEV A + A         
Sbjct: 11  CLNKAWEYQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPHLK 70

Query: 64  --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                                   +     +TLEPC+ YG++P C+  +     +RVV+ 
Sbjct: 71  SDLEKLEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIA 130

Query: 104 VDDPDVRVSGRGLQWLSQKGII---VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
            ++ + +  G  L  L +  I       +      + L   +  Q  + +   L + ++ 
Sbjct: 131 AEENEAKKGG--LARLQKARIETMICHNLENKAKDLLLPFRVMEQKGRFNLFKLALRMNG 188

Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL--QEHS 218
           D   G        ITG  S    H  RA  D +++   T+  D+P L  R         +
Sbjct: 189 DYYHG-------KITGQKSVIFTHNQRAVCDTLIISGKTIRTDNPLLDTRFCDRFYHNKN 241

Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
           P   IL     ++  SK+                            +  I+ + +DL   
Sbjct: 242 PNIAILSKR-SINPHSKVFSVPNR----------------------LVNIFNNPKDLP-- 276

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYL 334
               + +G     +EGG  +  S  +   +D ++L+    +I E      + +P +   L
Sbjct: 277 ----LEKGFN--FIEGGWGLFESLRDK--IDVLLLHSHASMISEAFSAFALKTPFKGRLL 328

Query: 335 EKNF 338
               
Sbjct: 329 HAQI 332


>gi|219682367|ref|YP_002468751.1| riboflavin reductase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|219622100|gb|ACL30256.1| riboflavin reductase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|311086188|gb|ADP66270.1| riboflavin reductase [Buchnera aphidicola str. LL01 (Acyrthosiphon
           pisum)]
 gi|311086764|gb|ADP66845.1| riboflavin reductase [Buchnera aphidicola str. TLW03 (Acyrthosiphon
           pisum)]
 gi|311087352|gb|ADP67432.1| riboflavin reductase [Buchnera aphidicola str. JF99 (Acyrthosiphon
           pisum)]
 gi|311087852|gb|ADP67931.1| riboflavin reductase [Buchnera aphidicola str. JF98 (Acyrthosiphon
           pisum)]
          Length = 214

 Score =  125 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 83/207 (40%), Gaps = 17/207 (8%)

Query: 166 MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-------- 217
           M    S  IT   ++  V   RA+S  IL    T+L+D+P L  R   L +         
Sbjct: 1   MRNGDSKWITSKQARQDVQKFRAKSSVILSSSSTILSDNPLLNVRYKELDKKTLSIFPNK 60

Query: 218 ---SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274
               P+R+I+D   ++     IIKT     + ++    D  +      + I   +    +
Sbjct: 61  IFQHPIRVIIDSKNRVQPSHNIIKT--KGKIWLIRLKSDRKIWPKNTTQIIEKDHNKKIN 118

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
           +  LL  L    + ++ +E G+ ++   +NS L+D +I+Y +  ++G    P  +    L
Sbjct: 119 IFSLLKFLGQSEINNVWIEAGSTLSGFLLNSYLIDELIIYMAPKILGHEAKPLCMIYEKL 178

Query: 335 E----KNFMCVRRDYFGSDVCLEYIGK 357
           +      F        G D+ L    K
Sbjct: 179 KISNSLQFKFKNICQIGPDIRLILSPK 205


>gi|297559746|ref|YP_003678720.1| bifunctional deaminase-reductase domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296844194|gb|ADH66214.1| bifunctional deaminase-reductase domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 234

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 86/227 (37%), Gaps = 18/227 (7%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             R +  L  A+S D  I   G   + ++      ++  LRA+ DAILVG GT+ AD+P 
Sbjct: 1   MDRPYTILSCAMSVDGRIDDTGPERLRLSNEADFAEIDELRAECDAILVGAGTLRADNPG 60

Query: 207 LTCRLNGLQEHSP--------MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           L  R   L+E           ++ ++    +    ++   T     V+            
Sbjct: 61  LLVRSPLLRERRRERGRTAHLLKALVTRSGEFDPAARFFSTGDAGAVVYTGGAGVDTARR 120

Query: 259 AFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
           A   +       +  D      ++ +L  L  RGV  LLVEGG  +   F+ S LVD + 
Sbjct: 121 ALADRPAADPPAEVVDAGDPPTVRAVLADLADRGVGRLLVEGGGHIHTLFLTSGLVDELR 180

Query: 313 LYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCLEYI 355
           L  +  ++G+   P  +  G   +        V     G    L Y 
Sbjct: 181 LAVAPFLVGQEDAPRFVVPGAFPQTPDAPMRLVEARALGDVAVLRYR 227


>gi|50287537|ref|XP_446198.1| hypothetical protein [Candida glabrata CBS 138]
 gi|54036256|sp|Q6FU96|RIB7_CANGA RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|49525505|emb|CAG59122.1| unnamed protein product [Candida glabrata]
          Length = 244

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 88/206 (42%), Gaps = 15/206 (7%)

Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
               R  +TL  A S D  I         I+   +K   H LR   D IL+G GTVLADD
Sbjct: 20  HRNGRPFVTLTYAQSIDAKIAKQRGVRTTISHIETKEMTHYLRYFHDGILIGSGTVLADD 79

Query: 205 PELTCRLNGL--------QEHSPMRIILDPHFKLSLDS----KIIKTALLAPVIIVTEND 252
           P L C+  G         +E SP  IILDP  K         ++    +  P I++T   
Sbjct: 80  PGLNCKWIGPNNDPDESMEEKSPRPIILDPKLKWKYSGSKMEELCNQGMGKPPIVITTKT 139

Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFIN-SRLVDS 310
             V         +     D    K +L  L     + S+++EGG+ V +  +  S L+DS
Sbjct: 140 PKVKEANVEYMIMEPDANDRISWKSILDTLRRNYDMKSVMIEGGSHVINQLLMCSDLIDS 199

Query: 311 IILYRSQIVIGEGGIP-SPLEEGYLE 335
           +I+    I +G  G+  SP +E  L+
Sbjct: 200 LIVTIGSIYLGSEGVTVSPPDEVKLK 225


>gi|304406859|ref|ZP_07388514.1| bifunctional deaminase-reductase domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304344392|gb|EFM10231.1| bifunctional deaminase-reductase domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 219

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 12/203 (5%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVP----ITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
              T+   +S D  + +    S      +        +H  R     I+VG  T+  D+P
Sbjct: 1   MKTTVFSQISIDGKLTLGAGSSSKQLFTLFSNQDIEFIHQFRGHVQGIMVGKNTIHNDNP 60

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE---NDDPVLALAFRK 262
            LT R    +  +P+RI+      + LDS I+       +I+ TE   +DD +  +  R 
Sbjct: 61  FLTNRYE--ENKNPIRIVPTATMDIDLDSNILSDDGR-TIIVTTELGKDDDKIEQIRARG 117

Query: 263 KNINIIYCDCRDLKKLLTIL-VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           K+  +   D  D  +L   L    G+T L+VEGG  +     +  L D IIL +  I+IG
Sbjct: 118 KDCIVCGHDKVDFAELFRRLESEFGITDLMVEGGGFLNWHVFDQDLADEIILMQLPIIIG 177

Query: 322 E-GGIPSPLEEGYLEKNFMCVRR 343
               I     EGY +  F    +
Sbjct: 178 GADNITLADGEGYRDLAFAKKYK 200


>gi|290959312|ref|YP_003490494.1| reductase [Streptomyces scabiei 87.22]
 gi|260648838|emb|CBG71952.1| putative reductase [Streptomyces scabiei 87.22]
          Length = 385

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 81/224 (36%), Gaps = 16/224 (7%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             + ++ L  AVS D  +   G   + ++     ++V  +RA  DAIL+G GT+  D+P 
Sbjct: 1   MPQPYVLLSAAVSLDGFLDDTGPERLLLSSPADFDRVDEVRASVDAILIGAGTLRTDNPR 60

Query: 207 L--------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV--L 256
           L          R+       P+++ +     L   ++   T     V    +  D +  L
Sbjct: 61  LLVNSPERRAARVAAGLPEYPLKVTVSASGDLDPAARFWHTGGEKAVYTTDKGADRLHGL 120

Query: 257 ALAFRKKNINIIYC-DCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILY 314
            L      + ++          +L  L    GV  L+VEGG  V    +   L D I L 
Sbjct: 121 GLPTGPDGVTVVSVGPELAWTAVLDHLADVCGVRRLMVEGGGLVHTQLLRQDLADEIQLA 180

Query: 315 RSQIVIGEGGIPSPLE----EGYLEKNFMCVRRDYFGSDVCLEY 354
            + + +GE   P         G        +     G  V + Y
Sbjct: 181 VAPVFVGEADAPRLFGTGAYPGGPRSRLRLLETRPVGDIVLIRY 224



 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/114 (35%), Positives = 56/114 (49%), Gaps = 8/114 (7%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--HAEVQA 59
           VS  D  ++  A   +      + T  SV  ++V  DG  + RG +  GG P  HAE  A
Sbjct: 235 VSPADRHWLDLACELAA-ACPPSRTAFSVGAVVVAEDGTELARGHSREGGDPVVHAEEAA 293

Query: 60  LEE---AGEEARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDV 109
           L +   A      AT Y +LEPC+     P PCA+ +++ GIRRVV    +PD 
Sbjct: 294 LAKIDPADPRLASATVYSSLEPCARRASRPAPCARLVLDAGIRRVVTAWREPDT 347


>gi|331239010|ref|XP_003332159.1| hypothetical protein PGTG_13526 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309311149|gb|EFP87740.1| hypothetical protein PGTG_13526 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 275

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 90/234 (38%), Gaps = 41/234 (17%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
             +R  +TL  A S D  I  A                  LRA+ D I+VGIGTVL DDP
Sbjct: 50  CNQRPFVTLTYAQSLDGKIAGADG--------------QHLRARHDGIMVGIGTVLNDDP 95

Query: 206 ELTCRLNGLQ---EHSPMRIILDPHFKLSLDSKIIK----TALLAPVIIVTEND-DPVLA 257
           +L  R   L       P  I+LD   +   D K+IK         P +I   +       
Sbjct: 96  QLNVRNISLTVPLAKQPQPIVLDTALRTPADCKLIKNYKNQTGKQPWLICARSAMSLQRR 155

Query: 258 LAFRKKNINIIYC------------DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
                    +I              +  DL+K+L +    G+  L++EGGAA+  S +N 
Sbjct: 156 QELEAAGARVIPITNGMNAWTYKAKEGLDLEKVLEVCKLNGINRLMIEGGAAIISSILNQ 215

Query: 306 ----RLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
                +++ +I+  S  ++GEG GI S   +         +     G D    Y
Sbjct: 216 VSDNPILNILIVTVSPYMVGEGIGIKSSNIDSL--SLLRHLETKIMGLDAVFAY 267


>gi|328767668|gb|EGF77717.1| hypothetical protein BATDEDRAFT_5464 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 185

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 21/189 (11%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             ITL  A + D  I +     + I+   S    H LRA  DAILVG+ T++ D+P L+ 
Sbjct: 1   PKITLTYAQTFDGFIALP-GQQLAISSPQSMVLTHALRATHDAILVGVQTIICDNPSLST 59

Query: 210 RLNGL--------QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND-------DP 254
           R                P  +ILD H +  L++K++      P I  T          D 
Sbjct: 60  RFVDYGPPPDRITPPSQPRPVILDSHLRCPLNAKVL---SRNPFIFTTTTPSTHSNSWDA 116

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL--VDSII 312
           ++    +   IN       D+   L  L    + S+++EGG+ V    +++ +  + S+I
Sbjct: 117 LIQAGAQPITINSDSTHRVDIVSALEYLHSHNIHSVMIEGGSQVIKECLSNPMLPIHSLI 176

Query: 313 LYRSQIVIG 321
           +  S + +G
Sbjct: 177 VTVSPMFLG 185


>gi|315453509|ref|YP_004073779.1| Riboflavin biosynthesis protein [Helicobacter felis ATCC 49179]
 gi|315132561|emb|CBY83189.1| Riboflavin biosynthesis protein, priboflavin-specific deaminase
           [Helicobacter felis ATCC 49179]
          Length = 343

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 69/336 (20%), Positives = 119/336 (35%), Gaps = 70/336 (20%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAYGGCPHAEVQALEEA------ 63
           M + L  +     L   NPSVAC+++     ++          PHAEV+AL EA      
Sbjct: 6   MQSCLDKAWEVQTLALPNPSVACMVLDQNYRLLSLQTHTKAHTPHAEVRALAEAFNALSA 65

Query: 64  -----------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                                   +  +  T  VTLEPC+H+G++PPCA  +     +RV
Sbjct: 66  VPFPKDIDPLDKQANYNFLAQNHSDLFKECTLLVTLEPCNHFGKTPPCAALLCALKPKRV 125

Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
           +V   +     +  GL+ L + GI V  +        L+ +          ++ +   + 
Sbjct: 126 IVGALEQHPP-AQGGLKRLQEAGIEVIVLDLPACYDLLYPFKC--------LSKRGVFNL 176

Query: 161 DNMIGMAGCGSV-PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219
             +           I+G  S N  H  R  +  +++   +   D P L  R        P
Sbjct: 177 FKIATRLDGNYQGKISGTKSLNFTHNQRGVAQTLIISGQSARTDRPLLDHRFAD-----P 231

Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279
           +    D    +++ S+        PVI      D  L L         +Y   +DL    
Sbjct: 232 LYQ--DRLCDVAILSR-------NPVI------DRSLPLFGVAGREVRLYTRVQDLP--- 273

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
              +  G    ++EGG  +  S      +D ++ + 
Sbjct: 274 ---LHTGFN--IIEGGWHLLASL--QDHIDMLLTHT 302


>gi|124027442|ref|YP_001012762.1| pyrimidine reductase, riboflavin biosynthesis, RibD [Hyperthermus
           butylicus DSM 5456]
 gi|123978136|gb|ABM80417.1| Pyrimidine reductase, riboflavin biosynthesis, RibD [Hyperthermus
           butylicus DSM 5456]
          Length = 250

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 86/197 (43%), Gaps = 6/197 (3%)

Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
              +R +  +   ++ D  +  +      ++      ++ LLR  +DA+++G  T L DD
Sbjct: 1   MTLRRPYTVIFSTMTLDGRLASSTG-YSVLSCPYDFARLRLLRGAADAVMIGANTALLDD 59

Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
           P L  RL    E    R+++D   ++S   ++++      ++           L  R   
Sbjct: 60  PSLRKRLEPRSEKY-YRVVVDGRLRISASLRLVREPEPPVIVFTAVESQRARELEERGVR 118

Query: 265 INIIYCDCR-DLKKLLTILV-GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI-- 320
           ++++  +   DL + L IL    GV  LLVEGG  + +S ++SRLVD +    +  V   
Sbjct: 119 VHVVGSNGVVDLARALEILAVEYGVERLLVEGGGRLNYSLLSSRLVDEVRATITPYVFAA 178

Query: 321 GEGGIPSPLEEGYLEKN 337
           G      P+  G+ +  
Sbjct: 179 GRSFFEDPVGTGFRDTR 195


>gi|223994971|ref|XP_002287169.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220976285|gb|EED94612.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 359

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 23/215 (10%)

Query: 165 GMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR--LNGLQEHSPMRI 222
            ++   S   T   S + VH LR +S A+LVG GTV  D+  LT R    G  E  P+R+
Sbjct: 138 DLSETKSERFTSPESLDMVHRLRRESSAVLVGRGTVEYDNCSLTVRRVELGEGEEQPVRV 197

Query: 223 ILDPHFKLS-LDSKIIKTALLAPVIIVT-ENDDPVLALAFRKKNINIIYCD--------- 271
           +LDP   L   +  I       P ++   ++          +  +  +            
Sbjct: 198 VLDPSLSLLGRNYTIFSDGY--PTVVYHLQSGREEEISREERDFVTFVEMPNQISMSTDN 255

Query: 272 -----CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
                    + ++  L  RG+  ++VEGGAA A +F+N R VD  IL R+ +   +   P
Sbjct: 256 DKEQFTLSPQGIIDDLAKRGLNHIMVEGGAATARAFLNERAVDRAILVRASVEF-QEPKP 314

Query: 327 SPLEEGYLE-KNFMCVRRDYFGSDVCLEYIGKNLC 360
           + ++E  L+      +     GSD+ +EY  +N  
Sbjct: 315 AQIDEDTLKAAELQMIGTTNMGSDI-VEYWSRNEL 348


>gi|219122530|ref|XP_002181596.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406872|gb|EEC46810.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 281

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 82/194 (42%), Gaps = 20/194 (10%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSV-------PITGFISKNQVHLLRAQSDAILVGIGT 199
             R  IT   A S D  +               P++G  S    H +RA  D +L+G  T
Sbjct: 59  FPRPFITAAYAQSVDGKLAAYNGKEEVETTSNFPLSGSDSLLLTHAIRASHDGVLIGGKT 118

Query: 200 VLADDPELTCRLNGLQ----EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
           +  D+P LT RL           P  I+LD H     + + +  ++     I+  + +  
Sbjct: 119 LSIDNPRLTNRLWDHDSLKLHAQPTSIVLDTHLN---NIQSLGDSMRLKHPIICCSKEAA 175

Query: 256 LALAFRKKNINIIYCDC-----RDLKKLLTILV-GRGVTSLLVEGGAAVAHSFINSRLVD 309
            +      ++ ++ C C      DL  +L  L  G G+ SL++EGG  +  SF++ +LVD
Sbjct: 176 SSCKELPSSVVLLPCRCSKNGQIDLGDMLHKLYIGYGIKSLMIEGGPTLLKSFLDDQLVD 235

Query: 310 SIILYRSQIVIGEG 323
            + +  +   +G G
Sbjct: 236 CLCITIAPKFLGSG 249


>gi|116329381|ref|YP_799101.1| pyrimidine reductase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116330018|ref|YP_799736.1| pyrimidine reductase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116122125|gb|ABJ80168.1| Pyrimidine reductase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116123707|gb|ABJ74978.1| Pyrimidine reductase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 217

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 89/207 (42%), Gaps = 2/207 (0%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           +    ++++ +A++ D  +         ++    K ++  +R+++D +++G  ++L DDP
Sbjct: 1   MTSLPNVSINMAMTLDGKVSRPDKRWYGLSSRNDKKRMDEIRSKADVLILGKNSILNDDP 60

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV-TENDDPVLALAFRKKN 264
            +  R        P  +IL     L  D K+ + +   P+I    EN   VL        
Sbjct: 61  VIHLRYV-RDIKDPRPVILLRSGTLPEDKKVFRFSKQPPLIFCLNENYSSVLDNLCSVAE 119

Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           I  +  +     ++L IL   G   +L+EGG ++  SF  S L+  I L     +IG+  
Sbjct: 120 IVSLPGNDLSPLEVLKILSEMGYREILLEGGPSLNDSFFRSDLISRIYLTIVPFLIGQKD 179

Query: 325 IPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           +PS         NF   + D   S+V 
Sbjct: 180 LPSIAGGPKEYLNFDQKKWDLISSEVL 206


>gi|45190643|ref|NP_984897.1| AER037Cp [Ashbya gossypii ATCC 10895]
 gi|54036278|sp|Q757H6|RIB7_ASHGO RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|44983622|gb|AAS52721.1| AER037Cp [Ashbya gossypii ATCC 10895]
          Length = 246

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 83/201 (41%), Gaps = 14/201 (6%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             +TL  A S D  I         I+   +K   H LR     IL+G GT LADDP L C
Sbjct: 29  PFVTLTYAQSLDARIAKQKGERTVISHEETKTMTHYLRYHHSGILIGSGTALADDPGLNC 88

Query: 210 RLNGL-------QEHSPMRIILDPHFKLSL-DSKI--IKTALLAPV-IIVTENDDPVLAL 258
           R           ++ SP  IILD   +     SKI  +         I+VT  +  V  L
Sbjct: 89  RWTPAADGADCTEQSSPRPIILDVRGRWRYRGSKIEYLHNLGKGKAPIVVTGGEPEVREL 148

Query: 259 AFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVEGGAAVAHS-FINSRLVDSIILYRS 316
                 + +      +  +L   L     + S++VEGGA V +   +   +VDS+++   
Sbjct: 149 GVSYLQLGVDEGGRLNWGELFERLYSEHHLESVMVEGGAEVLNQLLLRPDIVDSLVITIG 208

Query: 317 QIVIGEGGIP-SPLEEGYLEK 336
              +G  G+  SP EE  LE 
Sbjct: 209 SKFLGSLGVAVSPAEEVNLEH 229


>gi|323455737|gb|EGB11605.1| hypothetical protein AURANDRAFT_15038 [Aureococcus anophagefferens]
          Length = 161

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 11/157 (7%)

Query: 164 IGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC-RLNGLQEHSPMRI 222
           +   G  S   T   S + VH LR  SDA+LVG+ TV  DDP LT  R++ + +  P+R+
Sbjct: 14  VDDLGGKSGRFTSPASLDCVHRLRRGSDAVLVGVSTVARDDPSLTVRRVDPIDDAQPLRV 73

Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282
           ILDP+ +   D+ ++   L  P  + +  D       F   +  +      +L  +L  L
Sbjct: 74  ILDPNGRAPRDAALLTDGL--PTAVFSRGD-------FGAVDPAVALEPFGELPTMLDAL 124

Query: 283 -VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
               GV  L+VEGG   A +F+ + LVD  ++ R+ +
Sbjct: 125 ERDHGVAHLMVEGGPFTARAFLAAGLVDRAVIVRAPV 161


>gi|254292424|ref|YP_003058447.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Hirschia
           baltica ATCC 49814]
 gi|254040955|gb|ACT57750.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Hirschia
           baltica ATCC 49814]
          Length = 215

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 50/153 (32%), Positives = 74/153 (48%), Gaps = 4/153 (2%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           +P    D  +M  A+  +R  +G T+ NP+VAC++V    +IG   T  GG PHAE  AL
Sbjct: 4   LPEIEMDKIYMRRAIALARAQLGRTAPNPAVACVLVSGETIIGEAATGDGGRPHAEEIAL 63

Query: 61  EEA-GEEARGATAYVTLEPCSHYGRSPP-CAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           E   G+E   ATAYVTLEPC         C+  ++  G++RVV+   DP    +  G+  
Sbjct: 64  ESLRGQELSRATAYVTLEPCHSRSNGGAGCSDRLVVSGVKRVVIAQIDPHP-TAKDGIAK 122

Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRS 150
           L   G+ +   ++E E       +       R 
Sbjct: 123 LKAAGLDVEVGLLEDEAAELTRGFFHLLETGRP 155


>gi|255718859|ref|XP_002555710.1| KLTH0G15576p [Lachancea thermotolerans]
 gi|238937094|emb|CAR25273.1| KLTH0G15576p [Lachancea thermotolerans]
          Length = 250

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 54/209 (25%), Positives = 88/209 (42%), Gaps = 15/209 (7%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           ++  +TL  A S D+ I         I+   +K   H LR + DAI++G GT LADDP L
Sbjct: 28  QKPFVTLTYAQSLDSRISKGKGLRTTISHPETKTMTHYLRYKHDAIMIGCGTALADDPGL 87

Query: 208 TCRLNGL-----QEHSPMRIILDPHFKLSLD----SKIIKTALLAPVIIVTENDDPVLAL 258
            C+            SP  +I+DP  K   +     ++ +     P +IV  +   +L  
Sbjct: 88  NCKWAPAGKTSSTSSSPRPVIIDPQGKWDFEGSKMQQLFREDAGKPPVIVVRDLGSILKR 147

Query: 259 AFRKKNINIIYCDC--RDLKKLLTIL-VGRGVTSLLVEGGAAVAHSFI-NSRLVDSIILY 314
                 ++         D   L+ +L    G  S++VEGGA V +  +    +VDS+I+ 
Sbjct: 148 HPDATYVSAPSSPAGRFDWLTLMLLLKSEFGFESIMVEGGALVINQLLSRPDVVDSLIVT 207

Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
                +G  G+   +     E N   V+ 
Sbjct: 208 VGAKYLGSEGVE--VSPPVGEVNLRNVQW 234


>gi|307083978|ref|ZP_07493091.1| putative cytidine and deoxycytidylate deaminase zinc-binding region
           [Mycobacterium tuberculosis SUMu012]
 gi|308366380|gb|EFP55231.1| putative cytidine and deoxycytidylate deaminase zinc-binding region
           [Mycobacterium tuberculosis SUMu012]
          Length = 132

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/122 (42%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
           V S D   M  A+  S    G T   P V  +IV  +G ++G G T   G  HAEV AL 
Sbjct: 6   VKSIDEA-MGLAIEHSYQVKGTTYPKPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALR 64

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            AG  A GA   VT+EPC+HYGR+PPC   +IE  +  VV  V DP+  ++G G   LS 
Sbjct: 65  RAGGLAAGAIVVVTMEPCNHYGRTPPCVNALIEARVGTVVYAVADPN-GIAGGGAGRLSA 123

Query: 122 KG 123
            G
Sbjct: 124 AG 125


>gi|241950233|ref|XP_002417839.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase, putative; htp
           reductase, putative [Candida dubliniensis CD36]
 gi|223641177|emb|CAX45554.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase, putative
           [Candida dubliniensis CD36]
          Length = 304

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 95/232 (40%), Gaps = 54/232 (23%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           KR  +TL  A S D+ I         ++   +K   H LR++ D ILVGIGT+LADDP+L
Sbjct: 42  KRPFVTLTYAQSLDSKIAAQPGTQTKLSHLETKTMTHYLRSKHDCILVGIGTILADDPKL 101

Query: 208 TCRLNGL-------------QEHSPMRIILDPHFKLSLD----SKIIKT----------- 239
            CR                   H    +++DPH K         +I +T           
Sbjct: 102 NCRYIEPIIDKGVGVGVGVGVGHQIRPVVIDPHGKWQYHQSQLCRICQTTTIQQQDNKQN 161

Query: 240 --------------ALLAPVIIVTENDDP--VLALAFRKKNINIIYCDCR-------DLK 276
                         A LAP II+ E+  P         K+    I            +  
Sbjct: 162 TSPPPPPPPPPPQAAGLAPFIIIDESTIPNVESEKMVNKQGGKYIKLPLLSTINVSINWV 221

Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFI---NSRLVDSIILYRSQIVIGEGGI 325
           K+L  L   G+ S+++EGGA + +  +   + +L+DSII+  + + +G  G+
Sbjct: 222 KILQKLYQLGLKSIMIEGGAKIINDLLSINDYKLIDSIIITIAPVFLGCNGV 273


>gi|196229635|ref|ZP_03128499.1| bifunctional deaminase-reductase domain protein [Chthoniobacter
           flavus Ellin428]
 gi|196225961|gb|EDY20467.1| bifunctional deaminase-reductase domain protein [Chthoniobacter
           flavus Ellin428]
          Length = 234

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 91/228 (39%), Gaps = 16/228 (7%)

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
             +   R  +T   A++ D  I          T    K ++  +RA+ DAIL G  T+  
Sbjct: 1   MPRQPPRPFVTSNFAMTWDGRISTRRSTPANFTSPKDKRRLVEIRAECDAILAGAKTIAT 60

Query: 203 D-------DPEL-TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
           D       DP L T R+   Q   P+R++L    ++    ++   +  +P+II +    P
Sbjct: 61  DNMTMGLPDPALRTARVKRGQSAYPLRVLLTNSGRIDPALRVF-ESTFSPIIIFSTTRMP 119

Query: 255 VLALAF--RKKNINIIYCDCRDLKKLLTIL-VGRGVTSLLVEGGAAVAHSFINSRLVDSI 311
               +    K ++ +      +L  +L  L    GV  L+ EGGA +  + +++ L+D I
Sbjct: 120 ARVQSALAGKADLWLHEGPAVNLAGMLATLRADYGVKRLVCEGGAQIFRALLSAGLIDEI 179

Query: 312 ILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCVRRDYFGSDVCLEYI 355
            L  +  + G       + +   +L K  N      +    +  L Y 
Sbjct: 180 HLTLAPKIFGGIKATTITGIAGDFLPKSINAHLRSMEVIEDECFLRYR 227


>gi|29469223|gb|AAO65336.1| putative bifunctional enzyme deaminase/reductase [Streptomyces
           murayamaensis]
          Length = 226

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 84/225 (37%), Gaps = 15/225 (6%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           +  R ++ L  AVS D  +       + ++     ++V   RA +DAILVG  T+  D+P
Sbjct: 1   MAIRPYVVLSAAVSLDGRLDDTSRDRLVLSNRRDLDRVDDERAAADAILVGATTLRRDNP 60

Query: 206 ELTCRLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
            L       +           P+++ +    +++              ++ T +   + A
Sbjct: 61  RLLVASADRRARRVALGMPEHPLKVTVTGSAEVNTSYAFWHCGGEK--LVFTVDGALLRA 118

Query: 258 LAFRKKNINIIYC-DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
                   +++      D   LL  L  RGV  LLVEGG  V    +   L D + L  +
Sbjct: 119 RRTVGDLADVVSTGPALDWHLLLDELGRRGVERLLVEGGGTVHTQLLAQDLADELHLVVA 178

Query: 317 QIVIGEGGIPSPLE----EGYLEKNFMCVRRDYFGSDVCLEYIGK 357
            +++GE G P  L      G        +     G  V L Y  K
Sbjct: 179 PLLVGEAGAPVFLGPASYPGGPAARMTLLEARPVGDVVLLRYAPK 223


>gi|298707242|emb|CBJ25869.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 408

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 99/243 (40%), Gaps = 43/243 (17%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
              +TLK+A+ ++  +     G    T   S + VH +R   +A+LVG+GTV+ DDP LT
Sbjct: 146 MPSVTLKLAMDRNGAVDDMSEGPKRFTSPASLDAVHRIRRDCEAVLVGVGTVVRDDPSLT 205

Query: 209 CR---LNGLQEHSPMRIILDPHFKLS------LDSKIIKTALLAPVIIVTENDDPVLALA 259
            R   LNG Q   P R++LD   +L+          I++    + V      +D     A
Sbjct: 206 VRRVPLNGGQTRQPTRVVLDRTLRLTGAQAGQNPRAILRDGHSSLVFYSAGCEDTEARAA 265

Query: 260 FRKKNIN--------------------------------IIYCDCRDLKKLLTILVGRGV 287
             K ++                                        DL  +L  L+ RG+
Sbjct: 266 ELKADVKRSRTAVSDSPGETEPDTSHQKLAPVDFVGMPVQRPGAGVDLSGVLGALLERGI 325

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-NFMCVRRDYF 346
             +LVEGG +VA  F++ RLVD  I+ R+ +      +PS +    L +     V    +
Sbjct: 326 DHVLVEGGPSVARGFLSERLVDRAIIIRAPMEFVRP-VPSDIATDTLRRAGLELVGCTKW 384

Query: 347 GSD 349
           G D
Sbjct: 385 GDD 387


>gi|156937747|ref|YP_001435543.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Ignicoccus hospitalis KIN4/I]
 gi|156566731|gb|ABU82136.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
           [Ignicoccus hospitalis KIN4/I]
          Length = 221

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 71/178 (39%), Gaps = 10/178 (5%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
           + +    S D  I      S  ++       +H  R  SD +LVG  T   DDP L  + 
Sbjct: 4   VVIFSTASLDGRIATKSGDSK-LSCENDLRLLHKWRCWSDLVLVGANTAKTDDPGLFVKR 62

Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN---DDPVLALAFRKKNINII 268
              +   P+R ++D    +  D ++ +      +++ T     ++      F+   + ++
Sbjct: 63  VPCK-RQPLRGVVDGRLSVPHDLRLFREWPWTSLVVTTVEGIRNNEWKYKYFKSLGVEVL 121

Query: 269 YC---DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
                   D  + L  L  +GV  +LVEGG  +  S +    V+++ +     V+G G
Sbjct: 122 VAGKGPEVDWGRALEELGSKGVRKVLVEGGGRLNWSLLK--YVNTLEITYVGKVLGAG 177


>gi|238878329|gb|EEQ41967.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candida albicans
           WO-1]
          Length = 302

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 57/239 (23%), Positives = 94/239 (39%), Gaps = 61/239 (25%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           KR  +TL  A S D+ I         ++   +K   H LR++ DAILVGIGT+LADDP+L
Sbjct: 32  KRPFVTLTYAQSLDSKIAAQPGTQTKLSHLETKTMTHYLRSKHDAILVGIGTILADDPKL 91

Query: 208 TCRL--------NGLQEHSPMRIILDPHFKLSLDS------------------------- 234
            CR              H    +++DP+ K                              
Sbjct: 92  NCRYIFESVKPNEQRILHQIRPVVIDPYGKWQYHQSQLCQICQPSTTTTTTTTKKKKNSE 151

Query: 235 ----KIIKTALLAPVIIVTENDDP--VLALAFRKKNINIIYCD-----------CRDLKK 277
                +   A LAP II+ E+  P         K+    I                + ++
Sbjct: 152 SSPVPVPVPAGLAPFIIIDESTIPNIESEKMVIKQGGKYIKLPLLLSTTTKTKISDNWRE 211

Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFIN-----------SRLVDSIILYRSQIVIGEGGI 325
           +L  L   G+ S+++EGGA + +  ++            +L+DS+I+  + + +G  G+
Sbjct: 212 ILQKLYQLGLKSIMIEGGAKIINDLLSINNSTDDDDDDQKLIDSVIITIAPVFLGCNGV 270


>gi|218194431|gb|EEC76858.1| hypothetical protein OsI_15040 [Oryza sativa Indica Group]
          Length = 288

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 59/158 (37%), Positives = 84/158 (53%), Gaps = 17/158 (10%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
             D  ++   +  +R   G TS NP V C++V+ G V+G G     G PHAEV AL +AG
Sbjct: 54  DDDGVYIRRCVELARKAAGHTSPNPMVGCVVVRGGRVVGEGFHPEAGQPHAEVFALRDAG 113

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV---------------CVDDPDV 109
           + A  ATAYV+LEPC+HYGR+PPC + +I   ++ VVV                + DP+ 
Sbjct: 114 DLAENATAYVSLEPCNHYGRTPPCTEALINAKVKDVVVMWGLTYERRPRSIVDGMTDPNP 173

Query: 110 RVSGRGLQWLSQKGIIVDRMMESE--GKIFLHAYLTRQ 145
            V+ +G++ L   GI V   ME E   +    AY+ R 
Sbjct: 174 IVASKGIERLQSAGIDVRVCMEEEALCRKLNEAYIHRM 211


>gi|48477782|ref|YP_023488.1| hypothetical protein PTO0710 [Picrophilus torridus DSM 9790]
 gi|48430430|gb|AAT43295.1| hypothetical protein PTO0710 [Picrophilus torridus DSM 9790]
          Length = 185

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 25/205 (12%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++ + +A+S +  I         I+ +   N+   LR   DA+L+G GTV+ D+PEL  
Sbjct: 3   PYVIINVAMSLNGRISSINGSIK-ISDYYDWNRTIDLRKSVDAVLIGAGTVMVDNPEL-- 59

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
                 +H+  RIILD ++KL+ + K+    +  P  I+T  D  +       KN+ +I 
Sbjct: 60  ------KHARSRIILDGNYKLNDNYKVFDGGV--PTYIITGVDVSL-------KNVIVIK 104

Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
            +  D+K +L +L   G+ S+LVEGGA V   F  ++L D   +Y +  +I  G    P+
Sbjct: 105 LNDLDMKNILNVLYEHGIKSILVEGGANVISQFFLNKLYDEFYIYINPGMILSG---MPV 161

Query: 330 EEGYLEK-NFMCVRRDYFGSDVCLE 353
             G+    N+  ++    G  + L+
Sbjct: 162 FNGFEASVNYNILK---LGDGILLK 183


>gi|238059485|ref|ZP_04604194.1| deaminase-reductase domain-containing protein [Micromonospora sp.
           ATCC 39149]
 gi|237881296|gb|EEP70124.1| deaminase-reductase domain-containing protein [Micromonospora sp.
           ATCC 39149]
          Length = 296

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 72/179 (40%), Gaps = 8/179 (4%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
           ++ L  A+S D  I  A    + ++     ++V  +RA  DAILVG  TV ADDP L  R
Sbjct: 31  YVLLSCAMSIDGYIDDATDQRLLLSNEADLDRVDAVRASCDAILVGAATVRADDPRLVIR 90

Query: 211 LNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
               +          SP ++ +     L   ++         ++    +           
Sbjct: 91  SPERRRERAARGLPSSPTKVTVTGSGDLDPAARFFTVGDADRIVYCATSVLAETRHRLGA 150

Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
                   D    +++L  L  RGV  L+VEGGAAV   F+ + L D + L  +   +G
Sbjct: 151 LATVADGGDPVGPRRVLADLAARGVRRLMVEGGAAVHTLFLGAGLADELHLVVAPFFVG 209


>gi|186681940|ref|YP_001865136.1| CMP/dCMP deaminase, zinc-binding [Nostoc punctiforme PCC 73102]
 gi|186464392|gb|ACC80193.1| CMP/dCMP deaminase, zinc-binding [Nostoc punctiforme PCC 73102]
          Length = 143

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/138 (39%), Positives = 72/138 (52%), Gaps = 3/138 (2%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGEEAR 68
           FM AAL  SR  +     NP V C+ V    ++ +G T   G  HAE  AL+   G+   
Sbjct: 6   FMLAALAQSRKALPECLPNPPVGCVNVDVQEIVAQGYTQVPGKHHAEADALKRIQGKGFN 65

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIE-CGIRRVVVCVDDPDVRVSGRGLQWLSQKG-IIV 126
               YVTLEPCS +GR+P CA  I E C I  + V + DPD R +G+GL  L + G  + 
Sbjct: 66  FLKMYVTLEPCSFHGRTPACALAIAEDCRIHEIYVSILDPDPRNNGQGLDILRKAGKTVY 125

Query: 127 DRMMESEGKIFLHAYLTR 144
             +  +E   FL+ YL R
Sbjct: 126 VGLCANEVNTFLNQYLLR 143


>gi|68489028|ref|XP_711627.1| hypothetical protein CaO19.13697 [Candida albicans SC5314]
 gi|68489169|ref|XP_711559.1| hypothetical protein CaO19.6341 [Candida albicans SC5314]
 gi|46432872|gb|EAK92335.1| hypothetical protein CaO19.6341 [Candida albicans SC5314]
 gi|46432945|gb|EAK92405.1| hypothetical protein CaO19.13697 [Candida albicans SC5314]
          Length = 304

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/241 (23%), Positives = 94/241 (39%), Gaps = 63/241 (26%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
           KR  +TL  A S D+ I         ++   +K   H LR++ DAILVGIGT+LADDP+L
Sbjct: 32  KRPFVTLTYAQSLDSKIAAQPGTQTKLSHLETKTMTHYLRSKHDAILVGIGTILADDPKL 91

Query: 208 TCRL--------NGLQEHSPMRIILDPHFKLSLDS------------------------- 234
            CR              H    +++DP+ K                              
Sbjct: 92  NCRYIFEPVKPNEQRILHQIRPVVIDPYGKWQYHQSQLCQICQPSTTTTTTTKKKKKNSE 151

Query: 235 ----KIIKTALLAPVIIVTENDDP--VLALAFRKKNINIIYCD-----------CRDLKK 277
                +   A LAP II+ E+  P         K+    I                + ++
Sbjct: 152 SSPVSVPVPAGLAPFIIIDESTIPNIESEKMVIKQGGKYIKLPLLLSTTTKTKISDNWRE 211

Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFIN-------------SRLVDSIILYRSQIVIGEGG 324
           +L  L   G+ S+++EGGA + +  ++              +L+DS+I+  + + +G  G
Sbjct: 212 ILQKLYQLGLKSIMIEGGAKIINDLLSINNSTDDDDDDDDQKLIDSVIITIAPVFLGCNG 271

Query: 325 I 325
           +
Sbjct: 272 V 272


>gi|45659030|ref|YP_003116.1| riboflavin-specific deaminase/reductase [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45602276|gb|AAS71753.1| riboflavin-specific deaminase/reductase [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 222

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 88/208 (42%), Gaps = 4/208 (1%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           +    ++++ +A++ D  +         ++    K ++  +R++++ +++G  ++L DDP
Sbjct: 1   MNSLPNVSVNMAMTLDGKVSRPDGRWYGLSSRNDKKRMDEIRSKAEVLILGKNSILNDDP 60

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
            +  R        P  +IL     +  D K+ + + + P+I   + +  ++         
Sbjct: 61  VVHLRYVD-NVQDPRPVILVRSGTIPKDKKVFRFSKIPPLIFCLDENHHLIQENL-SSCA 118

Query: 266 NIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            I+     DL   K L +L   G   +L+EGG ++  SF    LV  I L     +IG+ 
Sbjct: 119 QIVPISGNDLSPLKALKVLSEMGYREILLEGGPSLNDSFFRLNLVSRIYLTIVPFIIGKK 178

Query: 324 GIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
            +PS         +F   + +   S+  
Sbjct: 179 DLPSITGGREEYLDFDLKKWNLISSETL 206


>gi|24216718|ref|NP_714199.1| riboflavin-specific deaminase/reductase [Leptospira interrogans
           serovar Lai str. 56601]
 gi|24198069|gb|AAN51217.1| riboflavin-specific deaminase/reductase [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 222

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 88/208 (42%), Gaps = 4/208 (1%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           +    ++++ +A++ D  +         ++    K ++  +R++++ +++G  ++L DDP
Sbjct: 1   MNSLPNVSVNMAMTLDGKVSRPDGRWYGLSSRNDKKRMDEIRSKAEVLILGKNSILNDDP 60

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
            +  R        P  +IL     +  D K+ + + + P+I   + +  ++         
Sbjct: 61  VVHLRYVD-NVQDPRPVILVRSGTIPKDKKVFRFSKIPPLIFCLDENHHLIQENL-SSCA 118

Query: 266 NIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            I+     DL   K L +L   G   +L+EGG ++  SF    LV  I L     +IG+ 
Sbjct: 119 QIVPISGNDLSPLKALKVLSEMGYREILLEGGPSLNDSFFRLNLVSRIYLTIVPFIIGKK 178

Query: 324 GIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
            +PS         +F   + +   S+  
Sbjct: 179 DLPSITGGREEYLDFDLKKWNLISSETL 206


>gi|12229926|sp|Q9P4B8|RIB7_KLUMA RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|9651717|gb|AAF91239.1|AF225206_5 riboflavin biosynthesis protein [Kluyveromyces marxianus]
          Length = 249

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 63/202 (31%), Positives = 93/202 (46%), Gaps = 18/202 (8%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            ++ L  A S D+ I         I+   +K   H LR + DAI++G GTV+ DDP L C
Sbjct: 30  PYVILTYAQSLDSRIAKIKGTRTFISHEETKTMTHYLRYKFDAIMLGCGTVMIDDPGLNC 89

Query: 210 RL-------NGLQEHSPMRIILDPHFKLSL-DSKIIK----TALLAPVIIVTE-NDDPVL 256
           +          L   SP  IILDP+ K    DSK+ K        AP+I+V E   +P  
Sbjct: 90  KWWPEDEKPEHLAGISPRPIILDPNCKWKFADSKMKKLYEAGDGKAPIIVVKELPSEPEE 149

Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINS-RLVDSIILY 314
            + +     N  +    D   +L  L  +  V S++VEGG  V +  +    LVD++I+ 
Sbjct: 150 GVDYLVMRTN--FTGKMDWSDMLVQLKSKFNVKSVMVEGGGIVINDLLQRPNLVDALIIT 207

Query: 315 RSQIVIGEGGIP-SPLEEGYLE 335
                +G  G+  SPL E  L+
Sbjct: 208 LGATFLGSEGVEVSPLVEIKLK 229


>gi|325068552|ref|ZP_08127225.1| riboflavin biosynthesis protein RibD [Actinomyces oris K20]
          Length = 181

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 30/142 (21%)

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH----SPMRIILDPHFKLSLD 233
            +++  H LR Q DAI+VG GT LADDP LT R    Q       P+R+++     L   
Sbjct: 2   AARHDAHRLRRQCDAIMVGTGTALADDPALTVRDEAGQPAPAHLQPLRVVVGSR-SLPAT 60

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
           S+++                            + +     D + +L +L  R +  +L+E
Sbjct: 61  SRVLADD-------------------------HYLLLPDHDPRAVLAVLAEREIRHVLLE 95

Query: 294 GGAAVAHSFINSRLVDSIILYR 315
           GG  +A +F+ + LVD ++ Y 
Sbjct: 96  GGPTLATAFLRAGLVDQVVAYT 117


>gi|289208457|ref|YP_003460523.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thioalkalivibrio
           sp. K90mix]
 gi|288944088|gb|ADC71787.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thioalkalivibrio
           sp. K90mix]
          Length = 262

 Score =  116 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 6/205 (2%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
              ++  S D  I      S  +TG      +H LRA  D ++VG GTV+ADDP LT R 
Sbjct: 52  TVAQLGQSLDGRIATQSGHSQYVTGPEDIEHLHRLRALVDGVVVGAGTVVADDPRLTVR- 110

Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD 271
              +   P+R+ILDP  ++  ++++ +   +  +++  E   P       +  +  +  D
Sbjct: 111 -KAEGVHPVRVILDPDGRIQPNARVFQDGEVKTLVVHAEGHGPCDMPDNVECMVMPVDAD 169

Query: 272 CR-DLKKLLTIL-VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG--GIPS 327
            R     L   L    G+  LLVEGG      F+ S  +D + L  + ++IG G  GI  
Sbjct: 170 GRFAPPALRDRLAAEHGLHRLLVEGGGRTVSRFLASDTLDRLHLTIAPMLIGSGRHGITL 229

Query: 328 PLEEGYLEKNFMCVRRDYFGSDVCL 352
           P  +   +      R    G D   
Sbjct: 230 PEIDTLDQALRPPCRIFRLGGDTLY 254


>gi|300236|gb|AAC60554.1| riboflavin biosynthesis [Saccharomyces cerevisiae]
          Length = 183

 Score =  116 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 48/152 (31%), Positives = 65/152 (42%), Gaps = 8/152 (5%)

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSK----- 235
             H LR   D ILVG GTVLAD+P L C+       +SP  II+D   K   D       
Sbjct: 1   MTHYLRHHHDGILVGSGTVLADNPGLNCKWGPDPAANSPRPIIIDTKQKWRFDGSKMQEL 60

Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEG 294
            IK     P+++VT                        D KKL  IL     + S++VEG
Sbjct: 61  FIKRQGKPPIVVVTSEPIIKEQHVDYAICPINDTTKLVDWKKLFEILKEEFNIRSVMVEG 120

Query: 295 GAAVAHS-FINSRLVDSIILYRSQIVIGEGGI 325
           GA V +   + S +V+S+I+      +G  G 
Sbjct: 121 GANVINQLLLRSDIVNSLIITIGSTFLGSSGT 152


>gi|134107195|ref|XP_777728.1| hypothetical protein CNBA6060 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50260424|gb|EAL23081.1| hypothetical protein CNBA6060 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 198

 Score =  116 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/195 (26%), Positives = 79/195 (40%), Gaps = 30/195 (15%)

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKT 239
             H LRA  DAILVG+ T++ DDP L   L         P  +ILDP  +  L S+I+  
Sbjct: 3   MTHHLRAIHDAILVGVHTLVLDDPRLQTNLLPPSHASPPPQPLILDPSLRFPLTSRILNE 62

Query: 240 ----------ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVG 284
                      L  P I+   +          +    ++              L +IL  
Sbjct: 63  WNTKPALRGRTLKQPWILCGPDVSSDRIHEVEQAGARVVPVPLDPNGRIPPSSLPSILTS 122

Query: 285 RGVTSLLVEGGAAVAHSFIN-------SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
            G+ S++VEGG+ V  SF++       S+LVDS+++  +   IG+GG      E      
Sbjct: 123 LGLRSVMVEGGSRVLSSFLHTLKRDDGSKLVDSVVVTVAPTFIGQGG------EDKGLPG 176

Query: 338 FMCVRRDYFGSDVCL 352
              V  +  G D  +
Sbjct: 177 LQTVHTETMGKDTVM 191


>gi|156841575|ref|XP_001644160.1| hypothetical protein Kpol_1053p40 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114796|gb|EDO16302.1| hypothetical protein Kpol_1053p40 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 242

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 81/184 (44%), Gaps = 10/184 (5%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             +TL  A S D  I         I+   +K   H LR   D ILVG GTVLADDP L C
Sbjct: 29  PFVTLTYAQSIDARIAAQKGERTVISHEETKTMTHYLRYHHDGILVGTGTVLADDPGLNC 88

Query: 210 RLN-GLQEHSPMRIILDPHFKLSLD-SKI----IKTALLAPVIIVTENDDPVLALAFRKK 263
           +      E+SP  II+D   K     SK+    +      P+++V   ++P+      + 
Sbjct: 89  KWGKNCFENSPKPIIIDLKQKWKFTGSKLHQLYLNNQGKNPIVVVA--NEPINKEEHVEY 146

Query: 264 NINIIYCDCRDLKKLLTILV-GRGVTSLLVEGGAAVAHSFI-NSRLVDSIILYRSQIVIG 321
                     D   LL  L     + S++VEGGA V +  +  S L++S+I+      +G
Sbjct: 147 LTIPTTNGKFDWGLLLNALKTNFNLNSIMVEGGAVVINQLLTESHLINSLIVTIGSTYLG 206

Query: 322 EGGI 325
             G+
Sbjct: 207 NLGV 210


>gi|254471099|ref|ZP_05084502.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Pseudovibrio sp. JE062]
 gi|211960241|gb|EEA95438.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Pseudovibrio sp. JE062]
          Length = 275

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 95/220 (43%), Gaps = 11/220 (5%)

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +      ++  +  ++  S D  I      S  ++   +   +H LRA  DA++VG+GT 
Sbjct: 60  FAPLCQAQKQFVIGQLGQSVDGRIATVTGDSNYVSCSEALIHLHRLRALCDAVVVGVGTA 119

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
           +AD+P+LT R   +    P RI++DP+ ++  DS +++      ++I   +         
Sbjct: 120 VADNPQLTVR--HVSGRHPARIVIDPYGRMPRDSTLLQDNSTRRIVITRTDAHARYPEGV 177

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
               +           ++   L  R    +LVEGGA     FI  +++D + L  + ++I
Sbjct: 178 ECFQLQPDAKGRLSCAEIRHAL--REFRCILVEGGAWTLSRFIELKMIDRLHLMIAPLII 235

Query: 321 GEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
           G G  P  L+   ++     +R      DV    +G ++ 
Sbjct: 236 GSG--PRGLQLPAIDYLAQAIR-----PDVTWHLLGVDML 268


>gi|154245980|ref|YP_001416938.1| deaminase-reductase domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154160065|gb|ABS67281.1| bifunctional deaminase-reductase domain protein [Xanthobacter
           autotrophicus Py2]
          Length = 282

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 88/187 (47%), Gaps = 4/187 (2%)

Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIG 198
             Y      +R  +  ++  S D  I      S  I G  + + +H LRA  DA++VG+G
Sbjct: 36  AIYHPIHKGERPFVVAQLGQSLDGRIATPSGESKYINGPHALDHLHALRADVDAVVVGVG 95

Query: 199 TVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           TV+ADDP LT R   +   SP R+I+DP  +    ++         +++        +A 
Sbjct: 96  TVVADDPLLTVRR--VAGRSPARVIIDPSGRADPAARCFAPDGARRLVLRRTGVAAPVAE 153

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
                 + +      +   +L  L  RG+T +LVEGGA    +F+ +  +D++ ++ S +
Sbjct: 154 GVEV--VAMEGAGAFEPAAMLDALAARGLTRILVEGGAHTLSAFLEAGCLDALHVFVSPV 211

Query: 319 VIGEGGI 325
           ++G G I
Sbjct: 212 ILGAGRI 218


>gi|254570505|ref|XP_002492362.1| Diaminohydroxyphoshoribosylaminopyrimidine deaminase [Pichia
           pastoris GS115]
 gi|238032160|emb|CAY70110.1| Diaminohydroxyphoshoribosylaminopyrimidine deaminase [Pichia
           pastoris GS115]
 gi|328353625|emb|CCA40023.1| hypothetical protein PP7435_Chr3-1080 [Pichia pastoris CBS 7435]
          Length = 243

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/198 (31%), Positives = 91/198 (45%), Gaps = 27/198 (13%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             +TL  A S D+ I         I+   +KN    LR++ DAILVG+ TVLADDP L C
Sbjct: 22  PFVTLTYAQSLDSRIAAKKGERTVISHQETKNMTQYLRSKHDAILVGVKTVLADDPGLNC 81

Query: 210 RLNGLQEHSPMR-IILDPHFKLSLDSKIIK-------TALLAPVIIVTEN-DDPVLALAF 260
           +L      +P+R IILDP F+L      +K            PV I  +    P L    
Sbjct: 82  KLG-----TPIRPIILDPTFQLLSKIASLKLIKLGLSGEGEPPVFITRKGVVSPDLQANL 136

Query: 261 R-KKNINIIYCDCRDLK-------KLLTILVGRGVTSLLVEGGAAVAHSFI--NSR---L 307
           R    I+I+    RD+         +L IL    + S++VEGGA + +  +        L
Sbjct: 137 RSDYGISIVEIADRDVHRGKMSWFAILKILKDAEIHSVMVEGGATIINDLLICRQNSVPL 196

Query: 308 VDSIILYRSQIVIGEGGI 325
           V S+I+    + +G+ G+
Sbjct: 197 VASLIITVGPVYLGKDGV 214


>gi|303280045|ref|XP_003059315.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459151|gb|EEH56447.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 146

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 63/146 (43%), Positives = 84/146 (57%), Gaps = 2/146 (1%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG-RGVTAYGGCPHAEVQALEEAGE 65
           D  +M  AL  +    G T  NP V C++V D   +   G     G PHAEV AL  AG+
Sbjct: 1   DKAYMRRALELAATATGQTHPNPLVGCVVVNDDGDVVGEGYHPKAGEPHAEVFALRAAGD 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            ARGATAYV+LEPC H+GR+PPC++ +++ G+RRVVV   DPD RVSG G++ L   GI 
Sbjct: 61  AARGATAYVSLEPCDHFGRTPPCSRALVDAGVRRVVVGFVDPDPRVSGGGIRTLLDAGIE 120

Query: 126 VDRMMES-EGKIFLHAYLTRQVEKRS 150
           V    E    +     ++ R  +KR 
Sbjct: 121 VTVGCEEAACREINADFIARNTKKRR 146


>gi|50311993|ref|XP_456028.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|54036251|sp|Q6CJ61|RIB7_KLULA RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
           AltName: Full=HTP reductase
 gi|49645164|emb|CAG98736.1| KLLA0F21120p [Kluyveromyces lactis]
          Length = 252

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 15/204 (7%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
           +++ ++ L  A S D  I         I+   +    H LR + D I++G GTVL DDP 
Sbjct: 28  QEKPYVILTYAQSLDARIAKIKGTRTIISHQETNTMTHYLRYKFDGIMLGCGTVLVDDPG 87

Query: 207 LTCRL--------NGLQEHSPMRIILDPHFKLSLDSK----IIKTALLAPVIIVTENDDP 254
           L C+             EHSP  IILDP+ K   +      +  +      I+V +    
Sbjct: 88  LNCKWWPDDEPKPEHFAEHSPRPIILDPNGKWKFEGSKMKTLFDSGDGKAPIVVVKKLPE 147

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINS-RLVDSII 312
           V+        +   +    D   L   L  + G+ S++VEGG  V +  +    L+D+++
Sbjct: 148 VVEENVDYLVMQTNFTGKVDWHDLFIQLKSQFGLKSIMVEGGGIVINDLLQRPHLIDALV 207

Query: 313 LYRSQIVIGEGGIP-SPLEEGYLE 335
           +      +G  G+  SPL E  L+
Sbjct: 208 ITVGATFLGSEGVEVSPLIEINLK 231


>gi|321249886|ref|XP_003191610.1| hypothetical protein CGB_A7040W [Cryptococcus gattii WM276]
 gi|317458077|gb|ADV19823.1| Hypothetical protein CGB_A7040W [Cryptococcus gattii WM276]
          Length = 198

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 78/192 (40%), Gaps = 30/192 (15%)

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKT 239
             H LRA  DAIL+G+ T++ DDP L   L         P  +ILDP  +  L S+I+  
Sbjct: 3   MTHQLRAIHDAILIGVHTLVLDDPRLQTNLLPPTHASPPPQPLILDPSLRFPLTSRILNE 62

Query: 240 ----------ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVG 284
                      L  P I+   N          +    ++              L +IL  
Sbjct: 63  WNTKPAMRGQTLKQPWILCGSNVPSERINEVEQAGARVVPVPLDSDGRIPPSSLPSILTS 122

Query: 285 RGVTSLLVEGGAAVAHSFIN-------SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
            G+ S+++EGG+ V  SF++       S+LVD++++  +   IGEGG      E      
Sbjct: 123 LGLRSVMIEGGSRVLSSFLHTLKRDDGSKLVDTVVVTVAPTFIGEGG------EDRGLPA 176

Query: 338 FMCVRRDYFGSD 349
              V  +  G D
Sbjct: 177 LQTVHTETMGKD 188


>gi|212536738|ref|XP_002148525.1| riboflavin biosynthesis protein Rib7, putative [Penicillium
           marneffei ATCC 18224]
 gi|210070924|gb|EEA25014.1| riboflavin biosynthesis protein Rib7, putative [Penicillium
           marneffei ATCC 18224]
          Length = 351

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 59/304 (19%), Positives = 97/304 (31%), Gaps = 101/304 (33%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
              TL  A S D+ + +A      ++G  SK   H LR + +AIL+G+GT +ADDP L C
Sbjct: 41  PFTTLTFATSLDSSLSLAPGVRTTLSGPQSKAMTHYLRFRHEAILIGVGTAIADDPGLNC 100

Query: 210 RLNGLQE------HSPMRII-------------------LDPHFKLSLDSKIIK------ 238
           R+ G           P   I                   +D         +  +      
Sbjct: 101 RIEGASGYEEQTSPPPDPAIQALAVEASSNLELKDLTKAVDSSQASPEQLRPFQNHIDRV 160

Query: 239 ----------------------------------------TALLAPVIIVTENDDP--VL 256
                                                       AP +I+++   P    
Sbjct: 161 QMENIRQRQASLHQPRPIIIDPNARWEPRESRKIIALVKQGKGKAPFVIISKLTSPPDEA 220

Query: 257 ALAFRKKNINIIYCDCR----------------DLKKLLTILV-GRGVTSLLVEGGAAVA 299
                K     I  D                  D   +L +L     + S+++EGG ++ 
Sbjct: 221 RELLEKYGGKYIALDTVTSNNPDDSVDAAHQHFDWNVILNVLATKENIKSIMIEGGGSII 280

Query: 300 HSFINSR----LVDSIILYRSQIVIGEGG-IPSPLEE------GYLEKNFMCVRRDYFGS 348
           +S ++ +    L+DS+I+  +   +G+GG + SP                  V+   FG 
Sbjct: 281 NSLLSEQRYSALIDSVIVTIAPTWLGQGGVVVSPQRRVDSYGCAIPASRLTDVKWHPFGE 340

Query: 349 DVCL 352
           DV L
Sbjct: 341 DVVL 344


>gi|225569894|ref|ZP_03778919.1| hypothetical protein CLOHYLEM_05989 [Clostridium hylemonae DSM
           15053]
 gi|225161364|gb|EEG73983.1| hypothetical protein CLOHYLEM_05989 [Clostridium hylemonae DSM
           15053]
          Length = 159

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 22/154 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
           ++S D +FM  A++ +     L  T   + C+IV +G +IGRG     T      HAE+ 
Sbjct: 1   MNSVDEKFMKEAIKQAGKAYALNET--PIGCVIVYEGRIIGRGYNRRNTDKNTLAHAEIT 58

Query: 59  ALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+ +A  +       G T YVTLEPC      P CA  I++  + RVVV   +P    +G
Sbjct: 59  AIRKASRKMGDWRLEGCTLYVTLEPC------PMCAGAIVQSRMDRVVVGCMNPKAGCAG 112

Query: 114 RGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
             L  L  +G      +   +   E    + ++ 
Sbjct: 113 SVLNVLQTEGFNHQTELTTGVCGGECSSMMKSFF 146


>gi|219115761|ref|XP_002178676.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217410411|gb|EEC50341.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 299

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 84/211 (39%), Gaps = 29/211 (13%)

Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF- 228
            S+  T   + + VH LR  SDA+LVG GTV AD+P LT R     +  P+R++LDP   
Sbjct: 81  ESLRFTCGEALDMVHRLRCCSDAVLVGRGTVQADNPSLTVRRTPC-DRQPLRVVLDPRLE 139

Query: 229 ----KLSLDSKIIKTALLAPVIIVTENDDP-------------VLALAFRKKNINIIYCD 271
               K    ++          ++     D              V     +    N+ + D
Sbjct: 140 LLRQKTDQGARFALLEDGLTTVVYHTVPDLDEDSLNLLETITVVYVPPTKPSGDNVPHGD 199

Query: 272 CRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
                 L   L  R GV  L+VEGG   A  F+    VD +IL  + +         PLE
Sbjct: 200 YLSAATLTRDLRDRFGVNHLMVEGGPLTARQFLYEHQVDRVILVHASLCF-----RQPLE 254

Query: 331 EGYLEKNFMCVRRDYFGSDVC----LEYIGK 357
            G  EK  +    +  G++ C    +EY  +
Sbjct: 255 SGLTEKVLVDAGLEKLGTEPCGVDQIEYWSR 285


>gi|223935243|ref|ZP_03627161.1| bifunctional deaminase-reductase domain protein [bacterium
           Ellin514]
 gi|223896127|gb|EEF62570.1| bifunctional deaminase-reductase domain protein [bacterium
           Ellin514]
          Length = 244

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 85/224 (37%), Gaps = 18/224 (8%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV------L 201
           +   + L IA + D  +  A    VP       + +  LR ++DA++ G  TV      +
Sbjct: 12  RFPFVYLNIATTADGKLAPANRKFVPFGSKRDHDHLLELRTEADAVMSGARTVDLFPVNM 71

Query: 202 ADDPELTCRL---NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
              P    R+   NGL E++ +RI++     L   S+I K      +I+ +E        
Sbjct: 72  GPGPAKYRRMRLKNGLAEYN-LRIVVSGSGSLDPRSEIFKHRFSPIIILTSERAPESRLK 130

Query: 259 AFRKKNINIIYCDCR--DLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
             R     ++ C  +  D K  L+ L  +  VT LL EGG  V  +   + LVD I L  
Sbjct: 131 KLRALADEVMVCGGKEVDFKAALSWLREKWAVTRLLCEGGGEVNDALFRADLVDEIHLTL 190

Query: 316 SQIVIGEGGIPSPLEEGY-----LEKNFMCVRRDYFGSDVCLEY 354
              V G    P+  +                     G ++ L Y
Sbjct: 191 CPWVFGGRNAPTMADGRGARTLADANQIKMKSEKRIGDELFLVY 234


>gi|167753725|ref|ZP_02425852.1| hypothetical protein ALIPUT_02006 [Alistipes putredinis DSM 17216]
 gi|167658350|gb|EDS02480.1| hypothetical protein ALIPUT_02006 [Alistipes putredinis DSM 17216]
          Length = 360

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 14/186 (7%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             +T+  AVS D  +       + ++      +VH LRA  DAILVG  T+  D+P L  
Sbjct: 1   MKVTVSTAVSADGYLDDRSPDRLILSTPEDWAEVHRLRAACDAILVGAETIRRDNPSLLV 60

Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
                   R++      P+++ L    +LS ++    T      I+ T   DP       
Sbjct: 61  GDEVLRRERIDRGLSPDPVKVTLTASCRLSPEANFF-TRGDQEKIVFTSCSDP----GPL 115

Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV-I 320
           ++   +I         ++T L  RG+ SLLVEGGAA    F    LVD+  L  +  V +
Sbjct: 116 RQVATVIPAAEITAALIVTELEKRGLRSLLVEGGAATLRMFFAENLVDTFRLAVNPAVKV 175

Query: 321 GEGGIP 326
           G+   P
Sbjct: 176 GDPRAP 181



 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 6/129 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQAL-- 60
           ++ D R++  A+  SR     TS+   V  +I+     I  G         HAE +A+  
Sbjct: 214 TAEDRRYLQMAIDESRKCTPSTSSY-CVGAVILTTDRKIFTGYTHETSPTHHAEQEAILK 272

Query: 61  -EEAGEEARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
              AG E RGAT Y ++EPCS     P  C++ II    RRVV  + +PD  V  +G   
Sbjct: 273 ALAAGVELRGATIYSSMEPCSERKSEPESCSELIIRHEFRRVVFALYEPDCFVCCQGALN 332

Query: 119 LSQKGIIVD 127
           L +  I V 
Sbjct: 333 LRRHRIEVS 341


>gi|317121275|ref|YP_004101278.1| bifunctional deaminase-reductase domain protein [Thermaerobacter
           marianensis DSM 12885]
 gi|315591255|gb|ADU50551.1| bifunctional deaminase-reductase domain protein [Thermaerobacter
           marianensis DSM 12885]
          Length = 252

 Score =  112 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 76/186 (40%), Gaps = 10/186 (5%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSV-PITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
              R ++ + +  + D  + M       PI   +    +  LRA  DA+L G GTV A D
Sbjct: 27  PPHRPYVLINMVTTVDGKVTMGRGTVKEPIGSKVDHALMARLRAPVDAVLRGAGTVRAYD 86

Query: 205 PELTC-------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
                       R        P+ +++     L LD++  + A   P+++          
Sbjct: 87  VPPRVPDEYAERRQARGLPAQPLPVVITGSCDLPLDARFFREAPRRPLVLTRRAAPAEKV 146

Query: 258 LAFRK-KNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
            A R+  ++     +  +++  L +L  R G+  LL EGG AV  + + + +VD +    
Sbjct: 147 EAVRQVADVAFAGEEKVEMRAALALLRERYGIRRLLSEGGPAVNFAMLEAGVVDELFWTV 206

Query: 316 SQIVIG 321
           +  ++G
Sbjct: 207 APKIVG 212


>gi|90579814|ref|ZP_01235622.1| Putative cytosine/adenosine deaminase [Vibrio angustum S14]
 gi|90438699|gb|EAS63882.1| Putative cytosine/adenosine deaminase [Vibrio angustum S14]
          Length = 175

 Score =  112 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 64/158 (40%), Gaps = 22/158 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56
           M V   D  FM  A+  +            V  ++V +G V+G G       +    HAE
Sbjct: 4   MEVEPNDEYFMRRAIELAAKAE--EEGEVPVGAVVVYNGQVVGEGWNRSIGQHDATAHAE 61

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL +AG+          T YVTLEPC      P CA  ++ C + +VV   DD     
Sbjct: 62  IMALRQAGKVLENYRLIDTTLYVTLEPC------PMCAGAMVHCRVGKVVYGADDLKTGA 115

Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTR 144
           +G  +  LS  G+         ++  E +  L A+  R
Sbjct: 116 AGSTMNLLSYDGVNHHVEQTSGVLVEECRAQLQAFFKR 153


>gi|183220792|ref|YP_001838788.1| riboflavin biosynthesis protein RibD [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189910892|ref|YP_001962447.1| pyrimidine deaminase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167775568|gb|ABZ93869.1| Pyrimidine deaminase, riboflavin biosynthesis [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779214|gb|ABZ97512.1| Riboflavin biosynthesis protein RibD [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 430

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 67/371 (18%), Positives = 129/371 (34%), Gaps = 79/371 (21%)

Query: 17  FSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQ------------ALEEA 63
                +G T  NP V+ ++    G  I +  T   G  HAE +             ++  
Sbjct: 16  LGFLAMGKTGGNPPVSAVLTNSIGEPIEKAHTQGYGGNHAERELYSLVEQKHSHSQIQTD 75

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
                     V+LEPC+H+G++PPC   +++   + +++   DP+  V     +   ++G
Sbjct: 76  ENSLSDTILSVSLEPCTHFGKTPPCRDLVLQHKPKELLLGWKDPNPMVQSGDWKLYLEQG 135

Query: 124 --IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
             + +D M+ +    +L  +L R    +  + +K A S +            ++      
Sbjct: 136 TKVRLDPMLANTSLPYLQGFLKRMQTGKPWVWIKSATSTEGNYVSKSFTKERVSSIEMDL 195

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN----------------------------- 212
            + LLRA+ DA+ VG  T   D+P L  R+                              
Sbjct: 196 YLQLLRAKFDAVAVGPNTTKVDEPSLHFRITEEMIQSVAPCKRETELVPFFEAATNLFSS 255

Query: 213 --------------GLQEHSPMRI-ILDPHFKLSLDSKIIKTALLAPVI--------IVT 249
                           + + P R+ +LDP+ ++  D    K   L   +        ++T
Sbjct: 256 LCRWTKESVTIHQLEEERYQPYRVFVLDPN-RMPSDHFFTKQRELNERLGKKLCLFFLLT 314

Query: 250 EN----------DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
            +             +        N ++I  +  +    L  L   G+ +LL E G+   
Sbjct: 315 NSIKKKDNLFGISSQMKETLESLSNTHLISVNQDEGDLFLKTLGKLGINTLLCEAGS-FF 373

Query: 300 HSFINSRLVDS 310
            +F+     D 
Sbjct: 374 PNFLKESFTDE 384


>gi|294630170|ref|ZP_06708730.1| riboflavin/cytosine deaminase [Streptomyces sp. e14]
 gi|292833503|gb|EFF91852.1| riboflavin/cytosine deaminase [Streptomyces sp. e14]
          Length = 422

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/261 (18%), Positives = 80/261 (30%), Gaps = 51/261 (19%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
               ++ L  AVS D  +   G   + ++G    ++V  +RA  DAILVG GT+ AD+P 
Sbjct: 1   MPLPYVLLSAAVSLDGYLDDTGPDRLLLSGPADFDRVDEVRASVDAILVGAGTLRADNPR 60

Query: 207 LTCRLNGLQEHS--------PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           L       +           P+++ +    +L   ++   T     V       + +   
Sbjct: 61  LLVNSPERRAARIAAGRPEYPLKVTVSASGELDPRARFWHTGGAKAVYTTDAGAERLRRT 120

Query: 259 AFRKKNIN-----------------------------------------IIYCDCRDLKK 277
                                                            +      D  +
Sbjct: 121 GLAPATAPTDQPPPTPPAPTDQPSPTPPTPPAQPGAETRSQAETGPVHIVPLGPELDWHR 180

Query: 278 LLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG-YLE 335
           LL  L    GV  L+VEGG  +    +  +L D + L  + + +G+   P     G Y  
Sbjct: 181 LLEHLHDVFGVRRLMVEGGGTIHTQLLQRQLADEVQLVLAPLFVGDPAAPRLFGPGPYQR 240

Query: 336 KNFMCVRRDYFGSDVCLEYIG 356
                V        V + Y  
Sbjct: 241 GRLRLVETRAIEDVVLMRYEP 261



 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 64/137 (46%), Gaps = 9/137 (6%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--HAEVQALE 61
             D  ++  A   +      ++T  SV  ++V  DG  + RG +   G P  HAE  AL 
Sbjct: 272 PADRHWLRIACELALL-CPPSATAFSVGAVVVAADGTELARGHSREAGDPVAHAEEAALA 330

Query: 62  E---AGEEARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVR-VSGRGL 116
           +   A     GAT Y +LEPC+     P PCA+ I++ G+RRVV    +PD    +  G 
Sbjct: 331 KIDPADPRLPGATVYSSLEPCARRASRPRPCARLILDAGVRRVVTAWREPDTFVEAADGA 390

Query: 117 QWLSQKGIIVDRMMESE 133
             L+  G  V  + E E
Sbjct: 391 GVLADAGAEVVVLPEFE 407


>gi|225376320|ref|ZP_03753541.1| hypothetical protein ROSEINA2194_01960 [Roseburia inulinivorans DSM
           16841]
 gi|225211696|gb|EEG94050.1| hypothetical protein ROSEINA2194_01960 [Roseburia inulinivorans DSM
           16841]
          Length = 166

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 23/156 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56
           M ++  D ++M AA+R ++    L      + C+IV+DG +I RG            HAE
Sbjct: 1   MKMT-QDEKYMKAAIREAKKAYALDEV--PIGCVIVQDGTIIARGYNRRNTEGNTLAHAE 57

Query: 57  VQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+++A ++         T YVTLEPC        CA  I++  +++VV+   +P    
Sbjct: 58  LTAIKKASKKTGDWRLEDCTMYVTLEPCQM------CAGAIVQSRMKKVVIATMNPKAGC 111

Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
           +G  L  L          I   ++E E  + L  + 
Sbjct: 112 AGSVLNLLQMAAFNHQVEIEKGVLEEECSMMLSDFF 147


>gi|89073121|ref|ZP_01159660.1| Putative cytosine/adenosine deaminase [Photobacterium sp. SKA34]
 gi|89051074|gb|EAR56531.1| Putative cytosine/adenosine deaminase [Photobacterium sp. SKA34]
          Length = 175

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 64/158 (40%), Gaps = 22/158 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56
           M V   D  FM  A+  +            V  ++V +G V+G G       +    HAE
Sbjct: 4   MQVEQNDEHFMRRAIELAAKAE--EEGEVPVGAVVVYNGRVVGEGWNRSIGQHDATAHAE 61

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL +AG+          T YVTLEPC      P CA  ++ C + +VV   DD     
Sbjct: 62  IMALRQAGKVLENYRLIDTTLYVTLEPC------PMCAGAMVHCRVGKVVYGADDLKTGA 115

Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTR 144
           +G  +  LS  G+         ++  E +  L A+  R
Sbjct: 116 AGSTMNLLSYDGVNHHVEQTSGVLVEECRAQLQAFFKR 153


>gi|313901432|ref|ZP_07834892.1| bifunctional deaminase-reductase domain protein [Thermaerobacter
           subterraneus DSM 13965]
 gi|313468303|gb|EFR63757.1| bifunctional deaminase-reductase domain protein [Thermaerobacter
           subterraneus DSM 13965]
          Length = 252

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 77/186 (41%), Gaps = 10/186 (5%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSV-PITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
              R ++ + +  + D  + M       PI   +    +  LRA  DA+L G GTV A D
Sbjct: 27  PPHRPYVLVNMVSTVDGKVTMGRGAVQEPIGSKVDHGLMARLRAPVDAVLRGAGTVRAYD 86

Query: 205 --PELTCRLNGLQE-----HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
             P +       ++       P+ +++     L LD++  + A   P+++          
Sbjct: 87  VPPRVPAEYAERRQARGLPPQPLPVVITGSCDLPLDARFFREAPRRPLVLTRRAAPADKV 146

Query: 258 LAFRK-KNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
            A R+  ++     +  +++  L +L  R G+  LL EGG  V  + + + +VD +    
Sbjct: 147 EAVRQVADVAFAGEEQVEMRAALALLRERYGIQRLLSEGGPTVNFAMLEAGVVDELFWTV 206

Query: 316 SQIVIG 321
           +  + G
Sbjct: 207 APKIAG 212


>gi|162456661|ref|YP_001619028.1| riboflavin biosynthesis protein ribD [Sorangium cellulosum 'So ce
           56']
 gi|161167243|emb|CAN98548.1| Riboflavin biosynthesis protein ribD [Sorangium cellulosum 'So ce
           56']
          Length = 187

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 5/166 (3%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGC---PHAEVQ 58
           +S+   ++M  A+  +    G T  NP V C IV   G ++G G T   G      A  +
Sbjct: 1   MSNDPEKWMRLAIEEAERARGGTGDNPWVGCAIVSAAGELLGSGHTLGPGEDHAEIAAAR 60

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           A    G    GAT Y TLEPCS +GR+P C++ I+E G+ RVV+ ++DP+ RV G G++ 
Sbjct: 61  AAHARGLSVVGATLYSTLEPCSFHGRTPACSRSIVERGVARVVIGMNDPNPRVDGEGVRI 120

Query: 119 LS-QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163
           L      +V+ + E+E +  L +++                + D +
Sbjct: 121 LREGGVEVVEGVCEAEIRRQLGSWVIEHHPHEPLRRGLAFPASDRV 166


>gi|323487362|ref|ZP_08092661.1| tRNA-specific adenosine deaminase [Clostridium symbiosum WAL-14163]
 gi|323399323|gb|EGA91722.1| tRNA-specific adenosine deaminase [Clostridium symbiosum WAL-14163]
          Length = 184

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 23/156 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAE 56
           M ++  D ++M AA+R ++    L      + C+IV +G +IGRG            HAE
Sbjct: 28  MKMTD-DEKYMRAAIREAKKAYAL--GEVPIGCVIVFEGKIIGRGYNRRIADKNVLSHAE 84

Query: 57  VQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+++A ++       G T Y+TLEPC      P CA  I++  I +V++   +P    
Sbjct: 85  INAIKKACKKMGDWRLEGCTMYITLEPC------PMCAGAIVQARIPKVLIGSMNPKAGC 138

Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
           +G  +  L +KG          ++  E    L  + 
Sbjct: 139 AGSVMNLLDEKGFNHQVETEIGILGEECSGMLKEFF 174


>gi|327393622|dbj|BAK11044.1| diaminohydroxyphosphoribosulpyrimidine deaminase ribD [Pantoea
           ananatis AJ13355]
          Length = 124

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/104 (35%), Positives = 52/104 (50%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCA 89
            V C+IV DG V+ +G T   G  HAE+ A+ +          YVTLEPCS  GR+P CA
Sbjct: 6   PVGCVIVHDGEVVAKGFTQPPGQHHAEIDAIAKLTFPISECEIYVTLEPCSFQGRTPSCA 65

Query: 90  QFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
             I E   + + + +DDP  +  G G   L + GI     +  +
Sbjct: 66  LTIAELKPKHIYIAMDDPHPKNRGAGRTILKKAGISFTSGIGKQ 109


>gi|163802511|ref|ZP_02196404.1| molecular chaperone DnaK [Vibrio sp. AND4]
 gi|159173812|gb|EDP58627.1| molecular chaperone DnaK [Vibrio sp. AND4]
          Length = 178

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 62/156 (39%), Gaps = 22/156 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
            S  D RFM  A+  +            V  ++VKDG +I  G       +    HAE+Q
Sbjct: 6   FSPQDERFMRRAMELAEQAE--AEGEVPVGAVLVKDGKIIAEGWNRSICSHDATAHAEIQ 63

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            L +AGE          T YVTLEPC      P CA  ++   ++RVV    D     +G
Sbjct: 64  TLRKAGETLGNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVYGAPDLKAGAAG 117

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144
             L             +   ++E+E +  L A+  R
Sbjct: 118 TVLNLFESQAAYHYATVESGLLENECRTQLQAFFKR 153


>gi|257075687|ref|ZP_05570048.1| hypothetical protein Faci_01419 [Ferroplasma acidarmanus fer1]
          Length = 189

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 18/174 (10%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
            +I + +A+S +  I         I+  I   +V  +R   D +L+G  +V  D+P L  
Sbjct: 3   PYIIINVAMSLNGKISAINGRYR-ISNDIDMTRVMDIRKNVDGVLLGANSVKVDNPVLN- 60

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
                   +  RIILD  F+L+ +  +      +   I ++N+  +       KN  II 
Sbjct: 61  -----YAKN--RIILDEKFRLNDNYHVFDGKSKS--YIFSKNNKKI-------KNAEIII 104

Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            D   +  +L  L   G+ S+LVEGG+ V + FI+ ++ D   ++ +  +I +G
Sbjct: 105 LDDLSITSILKKLYDMGIKSILVEGGSNVINQFIDEKIFDEFYIFINPGLILDG 158


>gi|289675579|ref|ZP_06496469.1| riboflavin biosynthesis protein RibD:riboflavin-specific deaminase,
           C-terminal [Pseudomonas syringae pv. syringae FF5]
          Length = 178

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 67/167 (40%), Gaps = 19/167 (11%)

Query: 199 TVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           TVLAD   LT R + L             +P+R+++D   ++ LD+   +       ++V
Sbjct: 2   TVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLRVPLDAPFFQAGSA---LVV 58

Query: 249 TENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           T            + +  +   D     DL++L+  L  RGV  +LVE G  +A +F   
Sbjct: 59  TCAAASARGRYQEEGHEMLALADSAGHVDLRRLMGELAARGVNEVLVEAGPRLAGAFARL 118

Query: 306 RLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSD 349
            LVD   L+ +   +G    P    PL +         +     G+D
Sbjct: 119 GLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIMEMRAVGND 165


>gi|207739573|ref|YP_002257966.1| hypothetical protein RSIPO_04273 [Ralstonia solanacearum IPO1609]
 gi|206592953|emb|CAQ59859.1| putative 3.5.4.25 protein [Ralstonia solanacearum IPO1609]
          Length = 242

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 78/217 (35%), Gaps = 12/217 (5%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             I L  A S D  +  A    + ++       +   RAQSDAI VG  T+ AD+P LT 
Sbjct: 1   MRIHLSAACSIDGYMDAASDARLVLSSPEDLLDIQRERAQSDAIFVGAETIRADNPRLTV 60

Query: 210 RLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
           R   L            P+++ +     L  ++   +      +++        L   + 
Sbjct: 61  REPPLIAQRIRRGLPPQPIKVTVTTTGNLDPNAHFFRQGAQEKIVLCPSAIAADLQSCYA 120

Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
                I        + +  +L  RGV  L VEGG  V   F++  + D   L  +   +G
Sbjct: 121 GLACVIGLDGPICARGIANVLQRRGVQPLFVEGGTRVLSMFVSEAVFDRFRLAIAPCFVG 180

Query: 322 EGGIPSPLE--EGYLEKNFMCV--RRDYFGSDVCLEY 354
             G        +   + +F  V  R    G    ++Y
Sbjct: 181 RAGASRLQLWHDRMWDPSFRLVAARVRLLGGTTVVDY 217


>gi|126666387|ref|ZP_01737366.1| bifunctional deaminase-reductase-like protein [Marinobacter sp.
           ELB17]
 gi|126629188|gb|EAZ99806.1| bifunctional deaminase-reductase-like protein [Marinobacter sp.
           ELB17]
          Length = 301

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 91/209 (43%), Gaps = 10/209 (4%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
           +  ++  S D  I      S  I G      +H +RA SDA++VG GT +AD+P+LT R 
Sbjct: 84  VIGQLGQSLDGRIATVSGHSRFINGDDGIVHLHRIRALSDAVVVGAGTAVADNPQLTVRR 143

Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK-NINIIYC 270
                 +P+R+++D   ++     +        + +V  +  P      +   ++  + C
Sbjct: 144 T--SGDNPVRVVIDRRRRVPASHHLFTDNAAPTLRLVAGDYQPGPKPKLQGLTSVLEVPC 201

Query: 271 DCRD-----LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
              +       ++L +L   G+  + +EGG     +F+ ++L+D + +  + ++IG G  
Sbjct: 202 LGHNQQPVCPAQILAVLADFGLHKIFIEGGGVTVSAFLRAQLLDRLHVMVAPMIIGSGRP 261

Query: 326 PSPLEEGYLEKNFMCVRRDY--FGSDVCL 352
              L E     + +  R      GSD+  
Sbjct: 262 AFTLPEIDQLDDALRPRATMVNLGSDMLF 290


>gi|83748799|ref|ZP_00945813.1| Possible pyrimidine reductase [Ralstonia solanacearum UW551]
 gi|83724552|gb|EAP71716.1| Possible pyrimidine reductase [Ralstonia solanacearum UW551]
          Length = 256

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 78/217 (35%), Gaps = 12/217 (5%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             I L  A S D  +  A    + ++       +   RAQSDAI VG  T+ AD+P LT 
Sbjct: 15  MRIHLSAACSIDGYMDAASDARLVLSSPEDLLDIQRERAQSDAIFVGAETIRADNPRLTV 74

Query: 210 RLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
           R   L            P+++ +     L  ++   +      +++        L   + 
Sbjct: 75  REPPLIAQRIRRGLPPQPIKVTVTTTGNLDPNAHFFRQGAQEKIVLCPSAIAADLQSCYA 134

Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
                I        + +  +L  RGV  L VEGG  V   F++  + D   L  +   +G
Sbjct: 135 GLACVIGLDGPICARGIANVLQRRGVQPLFVEGGTRVLSMFVSEAVFDRFRLAIAPCFVG 194

Query: 322 EGGIPSPLE--EGYLEKNFMCV--RRDYFGSDVCLEY 354
             G        +   + +F  V  R    G    ++Y
Sbjct: 195 RAGASRLQLWHDRMWDPSFRLVAARVRLLGGTTVVDY 231


>gi|197302614|ref|ZP_03167668.1| hypothetical protein RUMLAC_01343 [Ruminococcus lactaris ATCC
           29176]
 gi|197298196|gb|EDY32742.1| hypothetical protein RUMLAC_01343 [Ruminococcus lactaris ATCC
           29176]
          Length = 180

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEE 62
           D ++M  AL+ ++    L  T   + C+IV +G +I RG            HAE+ A+++
Sbjct: 22  DEKYMKEALKQAKKAYALEET--PIGCVIVHEGKIIARGYNRRNTDKSPLAHAEISAIKK 79

Query: 63  AGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++         T YVTLEPC        CA  II+  I RVVV   +P    +G  L 
Sbjct: 80  ASKKLGDWRLEECTLYVTLEPCQM------CAGAIIQSRIPRVVVGCMNPKAGCAGSVLN 133

Query: 118 WL-----SQKGIIVDRMMESEGKIFLHAYL 142
            L     + +  +  +++E E  + +  + 
Sbjct: 134 LLDVQAFNHQAEVKTKVLEEECSLMMKQFF 163


>gi|323694203|ref|ZP_08108379.1| cytidine and deoxycytidylate deaminase [Clostridium symbiosum
           WAL-14673]
 gi|323501676|gb|EGB17562.1| cytidine and deoxycytidylate deaminase [Clostridium symbiosum
           WAL-14673]
          Length = 155

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQAL 60
           + D ++M AA+R ++    L      + C+IV +G +IGRG            HAE+ A+
Sbjct: 2   TDDEKYMRAAIREAKKAYAL--GEVPIGCVIVFEGKIIGRGYNRRIADKNVLSHAEINAI 59

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           ++A ++       G T Y+TLEPC      P CA  I++  I +V++   +P    +G  
Sbjct: 60  KKACKKMGDWRLEGCTMYITLEPC------PMCAGAIVQARIPKVLIGSMNPKAGCAGSV 113

Query: 116 LQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
           +  L +KG          ++  E    L  + 
Sbjct: 114 MNLLDEKGFNHQVETEIGILGEECSGMLKEFF 145


>gi|254509189|ref|ZP_05121287.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus 16]
 gi|219547894|gb|EED24921.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus 16]
          Length = 187

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 22/156 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
            +  D ++M  A+  +      T     V  ++VKDG +I  G     G      HAE+Q
Sbjct: 13  FTPQDEQYMRRAMELAAHAE--TEGEVPVGAVLVKDGEIIAEGWNQSIGCHDATAHAEMQ 70

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            + +AG+          T YVTLEPC      P CA  ++   ++RVV    D     +G
Sbjct: 71  TIRKAGQVLENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVFGAPDLKAGAAG 124

Query: 114 RGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTR 144
             L     +       +   ++E E ++ L ++  R
Sbjct: 125 TVLNLFEHQAAYHYADVEQGLLEEECRVQLQSFFKR 160


>gi|153853556|ref|ZP_01994936.1| hypothetical protein DORLON_00926 [Dorea longicatena DSM 13814]
 gi|149753711|gb|EDM63642.1| hypothetical protein DORLON_00926 [Dorea longicatena DSM 13814]
          Length = 169

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 22/156 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           M + S D ++M  A++ ++    +      + C+IV    +IGRG            HAE
Sbjct: 1   MNMQSTDEKYMKEAIKQAKKAYAI--GEVPIGCVIVYQDKIIGRGYNRRTIDNNTLAHAE 58

Query: 57  VQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+++A ++         T YVTLEPC        C+  I++  + RVVV   +P    
Sbjct: 59  LIAIKKASKKMNDWRLEDCTMYVTLEPCQM------CSGAIVQSRMTRVVVGCMNPKAGC 112

Query: 112 SGRGLQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +G  L  L     + +  +   +ME E    + ++ 
Sbjct: 113 AGSILNLLDIPEFNHQVELTTGVMEEECSQMMKSFF 148


>gi|253580414|ref|ZP_04857679.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848144|gb|EES76109.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 181

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 22/151 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEA 63
            RFM  A+R ++    L      + C+IV +G +I RG            HAE+ A+ +A
Sbjct: 14  ERFMKEAIRQAKKAEAL--EEVPIGCVIVHEGKIIARGYNRRNTDKNTLSHAELNAIRKA 71

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            ++       G T YVTLEPC        C+  +++  I  VV+   +     +G  +  
Sbjct: 72  SKKLGDWRLEGCTMYVTLEPCQM------CSGALVQSRIDEVVIGCMNAKAGCAGSVMNL 125

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYLTR 144
           L   G      I+  ++E E    L  +  +
Sbjct: 126 LQVDGFNHQVKIIQGVLEEECSSMLSEFFRK 156


>gi|262395051|ref|YP_003286905.1| tRNA-specific adenosine-34 deaminase [Vibrio sp. Ex25]
 gi|262338645|gb|ACY52440.1| tRNA-specific adenosine-34 deaminase [Vibrio sp. Ex25]
          Length = 182

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 63/157 (40%), Gaps = 22/157 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P +  D  FM  A+  +            V  ++VKDG +I  G     G      HAE+
Sbjct: 5   PFTPQDELFMRRAMVLAEQAE--AEGEVPVGAVLVKDGEIIAEGWNRSIGTNDATAHAEI 62

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           Q L +AG++         T YVTLEPC      P CA  ++   ++RVV    D     +
Sbjct: 63  QTLRKAGQKIENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVFGAPDLKAGAA 116

Query: 113 GRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144
           G  L            ++   ++E E +  L A+  R
Sbjct: 117 GTVLNLFESQAAYHYALVEKGLLEDECRTQLQAFFKR 153


>gi|262402782|ref|ZP_06079343.1| tRNA-specific adenosine-34 deaminase [Vibrio sp. RC586]
 gi|262351564|gb|EEZ00697.1| tRNA-specific adenosine-34 deaminase [Vibrio sp. RC586]
          Length = 170

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 22/156 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
            S+ D +FM  A+  +     L      V  ++V++G +I  G     T      HAE++
Sbjct: 6   FSTQDEQFMRRAIELAAQAEAL--GEVPVGAVLVQEGKIIAEGWNCSITHQDATAHAEIE 63

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            + EAG+          T YVTLEPC      P CA  ++   ++R+V    D     +G
Sbjct: 64  VIREAGKVLSNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAG 117

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144
             +   +         +   ++E E +  L A+  R
Sbjct: 118 TVMDLFNSQASYHYATVEKGLLEEECRTQLQAFFQR 153


>gi|153834810|ref|ZP_01987477.1| tRNA-specific adenosine deaminase [Vibrio harveyi HY01]
 gi|148868738|gb|EDL67812.1| tRNA-specific adenosine deaminase [Vibrio harveyi HY01]
          Length = 177

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 62/156 (39%), Gaps = 22/156 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
            S  D  FM  A+  +            V  ++VKDG +I  G      A+    HAE+Q
Sbjct: 6   FSPQDELFMRRAMELAEQAE--AEGEVPVGAVLVKDGEIIAEGWNRSICAHDATAHAEIQ 63

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            L +AG+          T YVTLEPC      P CA  ++   ++RVV    D     +G
Sbjct: 64  TLRKAGKALGNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVYGAPDLKAGAAG 117

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144
             L             + + ++E E +  L A+  R
Sbjct: 118 TVLNLFESQAAYHYATVENGLLEEECRSQLQAFFKR 153


>gi|291537693|emb|CBL10805.1| Cytosine/adenosine deaminases [Roseburia intestinalis M50/1]
          Length = 154

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60
           + D ++M AA+R ++    L      + C+IV+D  +I RG            HAE+ A+
Sbjct: 2   NQDEKYMKAAIRQAKKAYALDEV--PIGCVIVQDDKIIARGYNRRNTEGNTLAHAELTAI 59

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A ++         T YVTLEPC        CA  I++  +++VV+   +P    +G  
Sbjct: 60  RKASKKTGDWRLEDCTMYVTLEPCQM------CAGAIVQSRMKKVVIGSMNPKAGCAGSV 113

Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
           L  L       +  I   ++  E    L  + 
Sbjct: 114 LNLLQMQQFNHQVEIEKGVLGEECSAMLSTFF 145


>gi|119510845|ref|ZP_01629970.1| riboflavin-specific deaminase [Nodularia spumigena CCY9414]
 gi|119464524|gb|EAW45436.1| riboflavin-specific deaminase [Nodularia spumigena CCY9414]
          Length = 242

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 80/239 (33%), Gaps = 29/239 (12%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           +  R H T+ +A+S D  I               K  +    A SDA+L+G GT+ A   
Sbjct: 1   MHNRPHTTVVLAMSADGKIADFRRSPARFGSGADKAHLEEQIAASDAVLIGAGTLRAYGT 60

Query: 206 ELTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND----- 252
            LT         R+ G +   P+ I++     ++ + K  +  +   ++  T        
Sbjct: 61  TLTVSQPILLQHRIKGGKPAQPVHIVITQSADINPEIKFFQQPIERWLLTTTMGAGSWQR 120

Query: 253 ------------DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
                              F +  I        D    L  L    +T L + GG  +  
Sbjct: 121 REQTLHSTGLTPARECPPKFEQMIIFDTPTGKVDTSAALQHLASLHITRLAILGGGELVA 180

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF----MCVRRDYFGSDVCLEYI 355
           S +   L+D + L    +++G    P+P+E       F      +       +V L Y 
Sbjct: 181 SMLQLDLIDELWLTVCPLILGGASAPTPVEGVGFLSQFAPKLELLEVHQVEQEVFLHYR 239


>gi|315180919|gb|ADT87833.1| zinc-binding domain protein [Vibrio furnissii NCTC 11218]
          Length = 189

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 63/157 (40%), Gaps = 22/157 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P S  D +FM  A+  +            V  ++VKDG +I  G     G      HAE+
Sbjct: 7   PFSPEDEQFMRRAMALAEQAE--AEGEVPVGAVLVKDGHIIAEGWNRSIGACDATAHAEI 64

Query: 58  QALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           Q L +AGE          T YVTLEPC      P CA  ++   ++R+V    D     +
Sbjct: 65  QVLRQAGEALHNYRLLETTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAA 118

Query: 113 GRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144
           G  L   S         +   ++E E +  L A+  R
Sbjct: 119 GTVLDLFSSQAAYHYATVEKGLLEDECRQQLQAFFQR 155


>gi|6572110|emb|CAB63093.1| riboflavin-specific deaminase [Bartonella quintana]
          Length = 87

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
            +L +L  RG+ S+L+EGG      F+N+  VD +I + + +++G+  I +P    YL +
Sbjct: 1   AILRLLYQRGINSVLLEGGVKTGEKFLNAGCVDHLICFYAPVILGKDRIEAPHFGNYLSQ 60

Query: 337 NFMCVRRDYFGSDVCLEYIGKNLCLQEL 364
            F  V    FG+D C ++  K LC QEL
Sbjct: 61  -FYEVETRMFGNDRCYKWRRKTLCSQEL 87


>gi|54307981|ref|YP_129001.1| putative cytosine/adenosine deaminase [Photobacterium profundum
           SS9]
 gi|46912407|emb|CAG19199.1| Putative cytosine/adenosine deaminase [Photobacterium profundum
           SS9]
          Length = 171

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 22/172 (12%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
           + D ++M  A+  +            V  ++V +G V+G G       +    HAE+ AL
Sbjct: 8   NHDEQYMRRAIELA--SQAEAEGEVPVGAVVVYNGQVVGEGWNRSIGQHDATAHAEMMAL 65

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +AG+  +      AT YVTLEPC      P CA  ++   I +V+    D     +G  
Sbjct: 66  RQAGKVVQNYRLLDATLYVTLEPC------PMCAGAMVHSRIGKVIFGASDLKTGAAGSV 119

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           +  L     +        +++ E +  L A+  R+  ++         + DN
Sbjct: 120 MNLLSYDEVNHHVDCQSGVLDEECRAQLQAFFKRRRAEKKAEKKARQAALDN 171


>gi|17231595|ref|NP_488143.1| riboflavin-specific deaminase [Nostoc sp. PCC 7120]
 gi|17133238|dbj|BAB75802.1| riboflavin-specific deaminase [Nostoc sp. PCC 7120]
          Length = 227

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 83/225 (36%), Gaps = 15/225 (6%)

Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
            V+ R H T+ +A+S D  I             + K  +    A SDA+L+G GT+ A  
Sbjct: 1   MVQHRPHTTVVLAMSADGKIADFRRSPARFGTSVDKTHLEQQIAASDAVLIGAGTLRAYG 60

Query: 205 PELTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
             LT         R    +   P+ I++     L+ + +  +  +    ++ T       
Sbjct: 61  TTLTVSDTVLLQQRQQQGKPDQPIHIVITHSANLNPEIRFFQQPIR-RWLVTTTLGQNFW 119

Query: 257 ALAFRKKNINIIYCDCRDLKKL--LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
                 + I +      ++  +  +  L    +  LLV GG A+  S +   L+D   L 
Sbjct: 120 QGRSEFERIMVFETPTGEIDTITAIEQLTSLQIARLLVLGGGALIASMLELDLIDEFWLT 179

Query: 315 RSQIVIGEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVCLEYI 355
              +++G    P+P++       L  +   +       +V L Y 
Sbjct: 180 VCPLILGGVTAPTPVDGKGFTSQLAPHLQLLEVKKVAHEVFLHYR 224


>gi|153830778|ref|ZP_01983445.1| zinc-binding domain protein [Vibrio cholerae 623-39]
 gi|148873734|gb|EDL71869.1| zinc-binding domain protein [Vibrio cholerae 623-39]
          Length = 193

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 68/176 (38%), Gaps = 22/176 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
            S+ D +FM  A+  +            V  ++V+DG +I  G     T +    HAE++
Sbjct: 24  FSAQDEQFMRRAIALATQAEAQ--GEVPVGAVLVRDGEIIAEGWNGSITNHDATAHAEIE 81

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            + +AG+          T YVTLEPC      P CA  ++   ++R+V    D     +G
Sbjct: 82  VIRKAGKALSNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAG 135

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164
             +   S         +   ++E E +  L A+  R+ ++            +   
Sbjct: 136 TVMDLFSSQAAYHYATVEKGLLEEECRAQLQAFFQRRRKEIKAKRDAERKDTERKN 191


>gi|261212078|ref|ZP_05926364.1| tRNA-specific adenosine-34 deaminase [Vibrio sp. RC341]
 gi|260838686|gb|EEX65337.1| tRNA-specific adenosine-34 deaminase [Vibrio sp. RC341]
          Length = 170

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 64/161 (39%), Gaps = 25/161 (15%)

Query: 1   MP---VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCP 53
           MP    S  D +FM  A+  +            V  ++V+DG +I  G     T +    
Sbjct: 1   MPESQFSPQDEQFMRRAITLAAQAEAQ--GEVPVGAVLVRDGEIIAEGWNCSITHHDATA 58

Query: 54  HAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE++ + +AG           T YVTLEPC      P CA  ++   ++R+V    D  
Sbjct: 59  HAEIEVIRKAGNVLNNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLK 112

Query: 109 VRVSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144
              +G  +   S         +   ++E E +  L A+  R
Sbjct: 113 AGAAGTVMDLFSSQAAYHYATVEKGLLEEECRTQLQAFFQR 153


>gi|257058456|ref|YP_003136344.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC
           8802]
 gi|256588622|gb|ACU99508.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC
           8802]
          Length = 230

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 82/228 (35%), Gaps = 18/228 (7%)

Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV---- 200
              KR      +A++ D  I               K  +    +  D +L G  T+    
Sbjct: 1   MTIKRPETVAILAITADGKIADNQRHPARFGSDTDKAHLEKQISLVDGVLFGGATLAAYQ 60

Query: 201 ---LADDPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
              L  +P+L   R    +   P+ I++    K++ + +      +   ++ T     V 
Sbjct: 61  TTLLIKNPQLLANRQQQKKPLQPINIVVSGSGKINPNLRFFSQE-VPRWLLTTMQGSIVA 119

Query: 257 ALAFRKKNINIIYCDCRDLKKL-----LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311
             + ++     I  D +DLKK+       +L   G+  + + GG  +  S +   L+D +
Sbjct: 120 KNSHQQAFEKTIVADSKDLKKIDFIQAFLVLKELGLNKVAILGGGELLASLLEVNLIDEL 179

Query: 312 ILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYI 355
            L    +++G    P+P+E         K    +  +    ++ L Y 
Sbjct: 180 WLTICPLILGGTTSPTPVEGLGFSYDQAKRLQLLTVESIDQEIFLHYR 227


>gi|328472552|gb|EGF43415.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus 10329]
          Length = 199

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 58/156 (37%), Gaps = 22/156 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
            +  D  FM  AL  +            V  ++VKDG VI  G       +    HAE+Q
Sbjct: 31  FTPQDEIFMRRALALAEQAEL--EGEVPVGAVLVKDGEVIAEGWNRSICSHDATAHAEIQ 88

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            L  AG           T YVTLEPC      P CA  ++   ++RVV    D     +G
Sbjct: 89  TLRNAGAVLENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVFGAPDLKAGAAG 142

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144
             L             +   ++E E +  L A+  R
Sbjct: 143 TVLNLFESQAAYHYATVERGLLEDECREQLQAFFKR 178


>gi|37679027|ref|NP_933636.1| cytosine/adenosine deaminase [Vibrio vulnificus YJ016]
 gi|37197769|dbj|BAC93607.1| cytosine/adenosine deaminase [Vibrio vulnificus YJ016]
          Length = 181

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 22/175 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P S  D  FM  A+  +   +  +     V  ++VKDG VI  G     G      HAE+
Sbjct: 7   PFSLQDEVFMRRAIELA--AIAESEGEVPVGAVLVKDGEVIAEGWNQSIGQHDATAHAEI 64

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           Q L +AG+          T YVTLEPC      P CA  ++   ++R+V    D     +
Sbjct: 65  QTLRQAGQSLGNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVFGAPDLKAGAA 118

Query: 113 GRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           G  L   S         I   ++ESE +  L A+  R+ ++   +  ++    D+
Sbjct: 119 GTVLDLFSSQAAYHYATIDKGLLESECREQLQAFFKRRRKEIKALKKELQTQSDH 173


>gi|291562950|emb|CBL41766.1| Cytosine/adenosine deaminases [butyrate-producing bacterium SS3/4]
          Length = 186

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 62/156 (39%), Gaps = 22/156 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           M   + +  +M  A+R ++    L      + C+IV DG +I RG            HAE
Sbjct: 7   MRKMTIEEHYMKEAIRQAKKAAAL--KEVPIGCVIVYDGRIIARGYNRRTVDKNVLAHAE 64

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+  A          G T YVTLEPC      P CA  I++  I +VV+   +P    
Sbjct: 65  IIAMRRACRILGDWRLEGCTMYVTLEPC------PMCAGAIVQARIPKVVIGCMNPKAGC 118

Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
           +G  L  L + G          ++  E    L  + 
Sbjct: 119 AGSVLDMLHEDGFNHQVETEVGLLGDECSQMLKDFF 154


>gi|254225102|ref|ZP_04918716.1| zinc-binding domain protein [Vibrio cholerae V51]
 gi|125622489|gb|EAZ50809.1| zinc-binding domain protein [Vibrio cholerae V51]
          Length = 193

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 68/176 (38%), Gaps = 22/176 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
            S+ D +FM  A+  +            V  ++V+DG +I  G     T +    HAE++
Sbjct: 24  FSAQDEQFMRRAIVLAAQAEAQ--GEVPVGAVLVRDGEIIAEGWNGSITNHDATAHAEIE 81

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            + +AG+          T YVTLEPC      P CA  ++   ++R+V    D     +G
Sbjct: 82  VIRKAGKALSNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAG 135

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164
             +   S         +   ++E E +  L A+  R+ ++            +   
Sbjct: 136 TVMDLFSSQAAYHYATVEKGLLEEECRAQLQAFFQRRRKEIKAKRDAERNDAERKN 191


>gi|126658204|ref|ZP_01729355.1| bifunctional deaminase-reductase-like protein [Cyanothece sp.
           CCY0110]
 gi|126620575|gb|EAZ91293.1| bifunctional deaminase-reductase-like protein [Cyanothece sp.
           CCY0110]
          Length = 226

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 85/221 (38%), Gaps = 12/221 (5%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA--- 202
           +E R   T+ +A++ D  I      +   +  I +N +    +  D +L G GT+ A   
Sbjct: 1   MENRPKTTVILAMTADGKIADFQRNAARFSSDIDQNHLEKQISLVDGVLFGAGTLRAFGT 60

Query: 203 -----DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
                D   L  R    +   P+ +++    K++ + +    ++   +I  +       +
Sbjct: 61  TKMVKDSELLANRKQKNKPSQPINVVISASGKIANNLRFFSQSVPHWLITTSAGIHNNTS 120

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
              +      I     +L +    L   G+  + + GG  +  +F+   L+D + L    
Sbjct: 121 KFEKVLTCAEIEAGKINLVEAFKTLKELGLNHIAILGGGELVANFLEQNLIDELWLTVCP 180

Query: 318 IVIGEGGIPSPLEE-GYLEKN---FMCVRRDYFGSDVCLEY 354
            ++G    P+P+E  G+L  +      +  +    ++ L Y
Sbjct: 181 YILGGKTAPTPVEGIGFLSSHGQKLELLSLEQIEHEIFLHY 221


>gi|240145078|ref|ZP_04743679.1| tRNA-specific adenosine deaminase [Roseburia intestinalis L1-82]
 gi|257202749|gb|EEV01034.1| tRNA-specific adenosine deaminase [Roseburia intestinalis L1-82]
 gi|291537828|emb|CBL10939.1| Cytosine/adenosine deaminases [Roseburia intestinalis XB6B4]
          Length = 154

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60
           + D ++M AA+R ++    L      + C+IV++  +I RG            HAE+ A+
Sbjct: 2   NQDEKYMKAAIRQAKKAYALDEV--PIGCVIVQNDKIIARGYNRRNTEGNTLAHAELTAI 59

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A ++         T YVTLEPC        CA  I++  +++VV+   +P    +G  
Sbjct: 60  RKASKKTGDWRLEDCTMYVTLEPCQM------CAGAIVQSRMKKVVIGSMNPKAGCAGSV 113

Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
           L  L       +  I   ++  E    L  + 
Sbjct: 114 LNLLQMQQFNHQVEIEKGVLGEECSAMLSTFF 145


>gi|283796876|ref|ZP_06346029.1| tRNA-specific adenosine deaminase [Clostridium sp. M62/1]
 gi|291075284|gb|EFE12648.1| tRNA-specific adenosine deaminase [Clostridium sp. M62/1]
          Length = 215

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 17/133 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M   + D R+M  A+R ++    L      + C+IV  G +IGRG     T      HAE
Sbjct: 37  MRKLTEDERYMREAVRQAKKAWAL--GEVPIGCVIVHRGKIIGRGYNRRTTDGNVLAHAE 94

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ +A            T YVTLEPC      P CA  I++  I +VV+   +P    
Sbjct: 95  ILAIRKACRIIGDWRLEECTMYVTLEPC------PMCAGAIVQARIPKVVIGCMNPKAGC 148

Query: 112 SGRGLQWLSQKGI 124
           +G  L  L ++G 
Sbjct: 149 AGSVLDLLHEEGF 161


>gi|260771319|ref|ZP_05880245.1| tRNA-specific adenosine-34 deaminase [Vibrio furnissii CIP 102972]
 gi|260613635|gb|EEX38828.1| tRNA-specific adenosine-34 deaminase [Vibrio furnissii CIP 102972]
          Length = 189

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 63/157 (40%), Gaps = 22/157 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P S  D +FM  A+  +            V  ++VKDG +I  G     G      HAE+
Sbjct: 7   PFSPEDEQFMRRAMALAEQAE--AEGEVPVGAVLVKDGHIIAEGWNRSIGACDATAHAEI 64

Query: 58  QALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           Q L +AGE          T YVTLEPC      P CA  ++   ++R+V    D     +
Sbjct: 65  QVLRQAGEALHNYRLLETTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAA 118

Query: 113 GRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144
           G  L   S         +   ++E E +  L A+  R
Sbjct: 119 GTVLDLFSSQAAYHYATVEKGLLEDECRQQLQAFFQR 155


>gi|331696725|ref|YP_004332964.1| bifunctional deaminase-reductase domain-containing protein
           [Pseudonocardia dioxanivorans CB1190]
 gi|326951414|gb|AEA25111.1| bifunctional deaminase-reductase domain protein [Pseudonocardia
           dioxanivorans CB1190]
          Length = 256

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 69/187 (36%), Gaps = 1/187 (0%)

Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
           L  Y          + +    S D  + +    S  +     K    +LR  +D +LVG 
Sbjct: 20  LRHYAYPDGLSAPRVRVNFVASLDGAVSV-DGLSGGLGSAADKAVFGVLRRLADVVLVGA 78

Query: 198 GTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
           GTV A+      R    +   P   ++     L   +++     +AP+++ T        
Sbjct: 79  GTVRAEGYRGARRPTVGRALPPPIAVVTGSAGLDPGARLFTDTAVAPIVLTTAGAPGERR 138

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
            A R    +++         LL  L  RG+  +L EGG A+  +   +  VD + L  S 
Sbjct: 139 DALRAAGADVVELPDLAPPTLLAELGRRGLHRVLCEGGPALHGALAAADAVDELCLTLSP 198

Query: 318 IVIGEGG 324
            ++G   
Sbjct: 199 TLVGGDA 205


>gi|15640880|ref|NP_230511.1| yfhC protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121585742|ref|ZP_01675537.1| zinc-binding domain protein [Vibrio cholerae 2740-80]
 gi|121728321|ref|ZP_01681351.1| zinc-binding domain protein [Vibrio cholerae V52]
 gi|147675155|ref|YP_001216345.1| zinc-binding domain-containing protein [Vibrio cholerae O395]
 gi|153802057|ref|ZP_01956643.1| zinc-binding domain protein [Vibrio cholerae MZO-3]
 gi|153819008|ref|ZP_01971675.1| zinc-binding domain protein [Vibrio cholerae NCTC 8457]
 gi|153823068|ref|ZP_01975735.1| zinc-binding domain protein [Vibrio cholerae B33]
 gi|227081040|ref|YP_002809591.1| yfhC protein [Vibrio cholerae M66-2]
 gi|229505525|ref|ZP_04395035.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae BX 330286]
 gi|229510804|ref|ZP_04400283.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae B33]
 gi|229517925|ref|ZP_04407369.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae RC9]
 gi|229608545|ref|YP_002879193.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae MJ-1236]
 gi|254848002|ref|ZP_05237352.1| zinc-binding domain-containing protein [Vibrio cholerae MO10]
 gi|298499008|ref|ZP_07008815.1| zinc-binding domain-containing protein [Vibrio cholerae MAK 757]
 gi|9655317|gb|AAF94026.1| yfhC protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121550105|gb|EAX60121.1| zinc-binding domain protein [Vibrio cholerae 2740-80]
 gi|121629376|gb|EAX61806.1| zinc-binding domain protein [Vibrio cholerae V52]
 gi|124122416|gb|EAY41159.1| zinc-binding domain protein [Vibrio cholerae MZO-3]
 gi|126510441|gb|EAZ73035.1| zinc-binding domain protein [Vibrio cholerae NCTC 8457]
 gi|126519394|gb|EAZ76617.1| zinc-binding domain protein [Vibrio cholerae B33]
 gi|146317038|gb|ABQ21577.1| zinc-binding domain protein [Vibrio cholerae O395]
 gi|227008928|gb|ACP05140.1| yfhC protein [Vibrio cholerae M66-2]
 gi|227012684|gb|ACP08894.1| yfhC protein [Vibrio cholerae O395]
 gi|229344640|gb|EEO09614.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae RC9]
 gi|229350769|gb|EEO15710.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae B33]
 gi|229357748|gb|EEO22665.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae BX 330286]
 gi|229371200|gb|ACQ61623.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae MJ-1236]
 gi|254843707|gb|EET22121.1| zinc-binding domain-containing protein [Vibrio cholerae MO10]
 gi|297543341|gb|EFH79391.1| zinc-binding domain-containing protein [Vibrio cholerae MAK 757]
          Length = 193

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 69/176 (39%), Gaps = 22/176 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
            S+ D +FM  A+  +            V  ++V+DG +I  G     T +    HAE++
Sbjct: 24  FSAQDEQFMRRAIVLAAQAEAQ--GEVPVGAVLVRDGEIIAEGWNGSITNHDATAHAEIE 81

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            + +AG+          T YVTLEPC      P CA  ++   ++R+V    D     +G
Sbjct: 82  VIRKAGKALSNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAG 135

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164
             +   S         +   ++E E +  L A+  R+ ++          + +   
Sbjct: 136 TVMDLFSSQAAYHYATVEKGLLEEECRAQLQAFFQRRRKEIKAKRDAERKNAERKN 191


>gi|269926111|ref|YP_003322734.1| bifunctional deaminase-reductase domain protein [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789771|gb|ACZ41912.1| bifunctional deaminase-reductase domain protein [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 241

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 88/235 (37%), Gaps = 14/235 (5%)

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
              E ++              ++ + +  + D         + PI        +  LR+ 
Sbjct: 7   CLRECRLTDVYTDLWLPIDEPYVYMNMVTTVDGR-ATIDGKAYPIGDDADHYLMRRLRSF 65

Query: 190 SDAILVGIGTVLADDPELTC-------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           +DA++VG GT   +   +         R+   +  +P  +I+    ++ L  K +     
Sbjct: 66  ADAVIVGAGTARNERVSVDIPEDMQHERVAAGKSANPRLVIVSGQGEVKL-YKSLMELGK 124

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVEGGAAVAHS 301
             +II   N    L       ++++        +++++ L    G+T LL+EGG  +  +
Sbjct: 125 ENLIIFGSNKS--LLDLSDYASVHVSSHPYPKPEEVISTLRNQYGLTRLLLEGGPKLNAA 182

Query: 302 FINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           FI S  V+ +    +  VIG+ G+P   P     ++     V      S++   Y
Sbjct: 183 FIESGSVNELFWTIAPKVIGKEGLPMVMPTSNLPVKTQLQLVSLYVSDSEIFTRY 237


>gi|295089886|emb|CBK75993.1| Cytosine/adenosine deaminases [Clostridium cf. saccharolyticum K10]
          Length = 214

 Score =  105 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 17/133 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M   + D R+M  A+R ++    L      + C+IV  G +IGRG     T      HAE
Sbjct: 36  MRKLTEDERYMREAVRQAKKAWAL--GEVPIGCVIVHRGKIIGRGYNRRTTDGNVLAHAE 93

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ +A            T YVTLEPC      P CA  I++  I +VV+   +P    
Sbjct: 94  ILAIRKACRIIGDWRLEECTMYVTLEPC------PMCAGAIVQARIPKVVIGCMNPKAGC 147

Query: 112 SGRGLQWLSQKGI 124
           +G  L  L ++G 
Sbjct: 148 AGSVLDLLHEEGF 160


>gi|229826609|ref|ZP_04452678.1| hypothetical protein GCWU000182_01985 [Abiotrophia defectiva ATCC
           49176]
 gi|229789479|gb|EEP25593.1| hypothetical protein GCWU000182_01985 [Abiotrophia defectiva ATCC
           49176]
          Length = 167

 Score =  105 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 22/169 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60
           + D ++M  A++ +     L      + C+IV DG +I RG            HAE+ A+
Sbjct: 2   TTDEKWMKEAIKQAEKAKKLDEV--PIGCVIVLDGKIIARGYNRRNTDHTSLAHAEMMAI 59

Query: 61  EEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           ++A ++ R       T YVTLEPC        CA  I++  + RVV+   +     +G  
Sbjct: 60  KKACKKIRDWRLEKCTLYVTLEPCQM------CAGAIVQSRVERVVIGAMNKKAGCAGSI 113

Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
              L       K  +V  ++E+E    +  +      K+SH     A S
Sbjct: 114 FNLLEEDRFNHKAEVVRGVLENECSEMMSMFFKELRAKKSHAFCFDAAS 162


>gi|262190740|ref|ZP_06048969.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae CT 5369-93]
 gi|262033384|gb|EEY51893.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae CT 5369-93]
          Length = 175

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 69/178 (38%), Gaps = 22/178 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
            S+ D +FM  A+  +            V  ++V+DG +I  G     T +    HAE++
Sbjct: 6   FSAQDEQFMRRAIVLAAQAEAQ--GEVPVGAVLVRDGEIIAEGWNGSITNHDATAHAEIE 63

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            + +AG+          T YVTLEPC      P CA  ++   ++R+V    D     +G
Sbjct: 64  VIRKAGKALSNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAG 117

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM 166
             +   S         +   ++E E +  L A+  R+ ++            +    +
Sbjct: 118 TVMDLFSSQAAYHYATVEKGLLEEECRAQLQAFFQRRRKEIKAKRDAERKDAERKNKL 175


>gi|326332013|ref|ZP_08198298.1| riboflavin biosynthesis protein RibD C- domain protein
           [Nocardioidaceae bacterium Broad-1]
 gi|325950151|gb|EGD42206.1| riboflavin biosynthesis protein RibD C- domain protein
           [Nocardioidaceae bacterium Broad-1]
          Length = 222

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 71/182 (39%), Gaps = 9/182 (4%)

Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203
               +   + + +  S D     +   S  +   +  +  H+LR  +D +LVG GT +A 
Sbjct: 20  YTPPRLPWLRVNMVSSLDGAATGSDGRSGTVNNAVDVDVFHVLRELADVVLVGAGTAVA- 78

Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
                       + +P+ +++    ++  D +  +   +    +              ++
Sbjct: 79  -------ETYTAKGTPI-VVVSRRGRVPEDLRGCEPGAVRLATVAEAPGLDAARDEIGEE 130

Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           N+ ++     DL  LLT L   G+  +L EGG ++  S + + LVD +    +  ++   
Sbjct: 131 NVYVVGTSEVDLPALLTRLHEEGLRHVLCEGGPSLLGSLLEAGLVDELCHTITPKLLAGD 190

Query: 324 GI 325
           G 
Sbjct: 191 GR 192


>gi|153837700|ref|ZP_01990367.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus AQ3810]
 gi|260366298|ref|ZP_05778754.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus K5030]
 gi|260876398|ref|ZP_05888753.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus AN-5034]
 gi|308095607|ref|ZP_05907165.2| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus
           Peru-466]
 gi|308126068|ref|ZP_05907632.2| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus AQ4037]
 gi|149748895|gb|EDM59726.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus AQ3810]
 gi|308086905|gb|EFO36600.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus
           Peru-466]
 gi|308092990|gb|EFO42685.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus AN-5034]
 gi|308106632|gb|EFO44172.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus AQ4037]
 gi|308112714|gb|EFO50254.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus K5030]
          Length = 174

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 58/156 (37%), Gaps = 22/156 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
            +  D  FM  AL  +            V  ++VKDG VI  G       +    HAE+Q
Sbjct: 6   FTPQDEIFMRRALALAEQAEL--EGEVPVGAVLVKDGEVIAEGWNRSICSHDATAHAEIQ 63

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            L  AG           T YVTLEPC      P CA  ++   ++RVV    D     +G
Sbjct: 64  TLRNAGAVLENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVFGAPDLKAGAAG 117

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144
             L             +   ++E E +  L A+  R
Sbjct: 118 TVLNLFESQAAYHYATVEKGLLEDECREQLQAFFKR 153


>gi|154505232|ref|ZP_02041970.1| hypothetical protein RUMGNA_02745 [Ruminococcus gnavus ATCC 29149]
 gi|153794430|gb|EDN76850.1| hypothetical protein RUMGNA_02745 [Ruminococcus gnavus ATCC 29149]
          Length = 179

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 22/155 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57
            + + D ++M  A+R ++    L      + C+IV    +IGRG            HAE+
Sbjct: 18  NIMNQDEKYMREAIRQAKKAYAL--EEVPIGCVIVYQDKIIGRGYNRRTVDKNTLAHAEL 75

Query: 58  QALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           QA+ +A ++         T YVTLEPC        C+  I++  I+RVVV   +P    +
Sbjct: 76  QAIRKASKKMDDWRLEDCTMYVTLEPC------QMCSGAIVQARIKRVVVGCMNPKAGCA 129

Query: 113 GRGLQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           G  L  L     + +  +   ++E +    +  + 
Sbjct: 130 GSILNLLDMKEFNHQVELTTGVLEEQCSGMMKQFF 164


>gi|260589044|ref|ZP_05854957.1| tRNA-specific adenosine deaminase [Blautia hansenii DSM 20583]
 gi|331083249|ref|ZP_08332362.1| hypothetical protein HMPREF0992_01286 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540823|gb|EEX21392.1| tRNA-specific adenosine deaminase [Blautia hansenii DSM 20583]
 gi|330404330|gb|EGG83875.1| hypothetical protein HMPREF0992_01286 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 164

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 64/152 (42%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
           + D RFM  A + +     L      + C+IV +G +I RG     T      HAE+ A+
Sbjct: 2   TEDERFMREAKKQAMKAYALREV--PIGCVIVYEGKIIARGYNRRNTDKNTVSHAEINAI 59

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A ++       G T YVTLEPC        CA  II+  + RVV+   +P    +G  
Sbjct: 60  RKASKKLGDWRLEGCTLYVTLEPCQM------CAGAIIQARVDRVVIGSMNPKAGCAGSV 113

Query: 116 LQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
           L  L   G      +   ++E E    L  + 
Sbjct: 114 LNLLEMDGFNHKAEVTRGVLEEECSSMLSGFF 145


>gi|169630059|ref|YP_001703708.1| hypothetical protein MAB_2976 [Mycobacterium abscessus ATCC 19977]
 gi|169242026|emb|CAM63054.1| Conserved hypothetical protein (possible reductase) [Mycobacterium
           abscessus]
          Length = 260

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 9/166 (5%)

Query: 185 LLRAQSDAILVGIGTVLADD---PELTC-----RLNGLQEHSPMRIILDPHFKLSLDSKI 236
            +RA +D ILVG GTV A+      L       R +  Q+  P   ++     +   + +
Sbjct: 78  AMRANADVILVGSGTVRAERYHGAHLPVGLRQRRQSRGQDEVPTIAVVTASGAVDPSTPL 137

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIY-CDCRDLKKLLTILVGRGVTSLLVEGG 295
              + +AP+++ + +  P +A       I +    D  DL   L  L  RG++ +L EGG
Sbjct: 138 FNESEVAPIVVTSASGAPHVASRVPGAQILVSGDGDTVDLPAALATLHARGLSRVLCEGG 197

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341
            A+  + +++ LVD + L  +   IG  G+        +   +  V
Sbjct: 198 PALLGTLLSAHLVDELCLTIAPTTIGGAGLRITSGPAEVLTGWRRV 243


>gi|311028951|ref|ZP_07707041.1| CMP/dCMP deaminase zinc-binding protein [Bacillus sp. m3-13]
          Length = 161

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 22/168 (13%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALE 61
            D  FM  A+  ++    L      +  ++V DG VI +G            HAE+  ++
Sbjct: 2   QDEHFMKLAIEEAKKAEAL--KEVPIGAVLVHDGKVISKGYNLRETTQRSITHAEIMVID 59

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           +A E         AT YVTLEPC      P CA  II+  I +VV    DP    +G  +
Sbjct: 60  QACEALQTWRLEEATLYVTLEPC------PMCAGAIIQSRIMKVVYGAKDPKAGCAGTLM 113

Query: 117 QWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
             L          +V  +ME E    L ++  +  +++    L+ + S
Sbjct: 114 NILQDSRFNHQTEVVSGIMEEECGELLSSFFRKLRQQKKEKKLRESNS 161


>gi|75907026|ref|YP_321322.1| bifunctional deaminase-reductase-like protein [Anabaena variabilis
           ATCC 29413]
 gi|75700751|gb|ABA20427.1| bifunctional deaminase-reductase-like protein [Anabaena variabilis
           ATCC 29413]
          Length = 227

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 83/224 (37%), Gaps = 15/224 (6%)

Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
            V+ R H T+ +A+S D  I             + K  +    A SDA+L+G GT+ A  
Sbjct: 1   MVQHRPHTTVVLAMSADGKIADFRRSPARFGTSVDKTHLEEQIAASDAVLIGAGTLRAYG 60

Query: 205 PELTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
             LT         R    +   P+ I++     L+ + +  +  +    ++ T       
Sbjct: 61  TTLTVSDTVLLQQRQQQGKPDQPIHIVITHSANLNPEIRFFQQPIR-RWLVTTNLGKNFW 119

Query: 257 ALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
                 + I +      ++    +L  L    +  LLV GG A+  S +   L+D   L 
Sbjct: 120 QGRSEFERILVFETPTGEIDTITVLKQLTSLQIARLLVLGGGALVASMLELDLIDEFWLT 179

Query: 315 RSQIVIGEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVCLEY 354
              +++G    P+P++       L  +   +       +V L Y
Sbjct: 180 VCPLILGGVTAPTPVDGKGFTSQLAPHLQLLEVKKVEHEVFLHY 223


>gi|258620044|ref|ZP_05715084.1| zinc-binding domain protein [Vibrio mimicus VM573]
 gi|258587777|gb|EEW12486.1| zinc-binding domain protein [Vibrio mimicus VM573]
          Length = 178

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 22/156 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
            S+ D +FM  A+  +            V  ++V+DG +I  G     T +    HAE++
Sbjct: 14  FSAQDEQFMRRAIMLAAQAE--EQGEVPVGAVLVRDGEIIAEGWNCSITHHDATAHAEIE 71

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            + +AG+          T YVTLEPC      P CA  ++   ++R+V    D     +G
Sbjct: 72  VIRKAGKVLSNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAG 125

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144
             +   +         +   ++E E +  L A+  R
Sbjct: 126 TVMDLFNSQASYHYATVEKGLLEEECRAQLQAFFQR 161


>gi|27363814|ref|NP_759342.1| tRNA-specific adenosine-34 deaminase [Vibrio vulnificus CMCP6]
 gi|27359931|gb|AAO08869.1| tRNA-specific adenosine-34 deaminase [Vibrio vulnificus CMCP6]
          Length = 181

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 71/175 (40%), Gaps = 22/175 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P S  D  FM  A+  +   +  +     V  ++VKDG VI  G     G      HAE+
Sbjct: 7   PFSLQDEVFMRRAIELA--AIAESEGEVPVGAVLVKDGEVIAEGWNQSIGQHDATAHAEI 64

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           Q L +AG+          T YVTLEPC      P CA  ++   ++R+V    D     +
Sbjct: 65  QTLRQAGQSLGNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVFGAPDLKAGAA 118

Query: 113 GRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           G  L   S         I   ++E E +  L A+  R+ ++   +  +     D+
Sbjct: 119 GTVLDLFSSQAAYHYATIEKGLLELECREQLQAFFKRRRKEIKALKKEQQTQSDH 173


>gi|301093219|ref|XP_002997458.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262110714|gb|EEY68766.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 149

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 5/132 (3%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNP-SVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEE 62
             D  FM  A+  +       S N   V C++V+DG+V+  G +    G  HAE  AL +
Sbjct: 6   ESDVAFMRLAVAEAHRSQP--SENAYCVGCVVVRDGLVLSTGFSRELPGNTHAEQVALHK 63

Query: 63  AGEEARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
              EA+GAT Y T+EPCS     + PC Q  +  G+ RVV+ V +P   V  +G+Q L +
Sbjct: 64  LNFEAQGATVYTTMEPCSTRVSGNVPCVQSCLRAGVARVVIGVMEPKTFVICKGVQLLQE 123

Query: 122 KGIIVDRMMESE 133
             + V  +   E
Sbjct: 124 ARVDVKLLKGLE 135


>gi|210613778|ref|ZP_03289892.1| hypothetical protein CLONEX_02100 [Clostridium nexile DSM 1787]
 gi|210150987|gb|EEA81995.1| hypothetical protein CLONEX_02100 [Clostridium nexile DSM 1787]
          Length = 158

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 67/154 (43%), Gaps = 22/154 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           + + D ++M  A++ ++    L      + C+IV +  +IGRG            HAE+ 
Sbjct: 1   MMNKDEKYMKEAIKQAKKAYAL--GEVPIGCVIVYEDKIIGRGYNRRTIDKNTIAHAEMM 58

Query: 59  ALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+++A ++         T YVTLEPC        C+  I++  +++VVV   +P    +G
Sbjct: 59  AIKKASKKMDDWRLEDCTMYVTLEPCQM------CSGAIVQSRMKKVVVGCMNPKAGCAG 112

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
             L  L       +  +   ++E E    +  + 
Sbjct: 113 SILNLLQMEEFNHQVELEIGVLEEECSALMKNFF 146


>gi|238917935|ref|YP_002931452.1| hypothetical protein EUBELI_02023 [Eubacterium eligens ATCC 27750]
 gi|238873295|gb|ACR73005.1| Hypothetical protein EUBELI_02023 [Eubacterium eligens ATCC 27750]
          Length = 176

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 61/154 (39%), Gaps = 22/154 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQ 58
               D R+M  A+  ++    L      + C+IV +G VIGRG            HAE+ 
Sbjct: 13  FEKDDYRYMKQAITQAKKAYKLNEV--PIGCVIVYEGKVIGRGYNRRNTDKTSLGHAEIT 70

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+++A            T YVTLEPC        CA  I++  I RVV+   +P    +G
Sbjct: 71  AIKKASRYMNDWRLENCTLYVTLEPCQM------CAGAIVQARIPRVVIGSMNPKAGCAG 124

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
             L  L       +  I   + E E    L  + 
Sbjct: 125 SILNILQIPTFNHQCEITKGVCEEECSEMLTTFF 158


>gi|213585178|ref|ZP_03367004.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
          deaminase/5-amino-6-(5-phosphoribosylamino)uracil
          reductase [Salmonella enterica subsp. enterica serovar
          Typhi str. E98-0664]
          Length = 69

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 32/57 (56%)

Query: 6  FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL  
Sbjct: 2  QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRM 58


>gi|255744661|ref|ZP_05418612.1| tRNA-specific adenosine-34 deaminase [Vibrio cholera CIRS 101]
 gi|262161205|ref|ZP_06030316.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae INDRE 91/1]
 gi|262168710|ref|ZP_06036405.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae RC27]
 gi|255737692|gb|EET93086.1| tRNA-specific adenosine-34 deaminase [Vibrio cholera CIRS 101]
 gi|262022828|gb|EEY41534.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae RC27]
 gi|262028955|gb|EEY47608.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae INDRE 91/1]
          Length = 175

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 69/176 (39%), Gaps = 22/176 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
            S+ D +FM  A+  +            V  ++V+DG +I  G     T +    HAE++
Sbjct: 6   FSAQDEQFMRRAIVLAAQAEAQ--GEVPVGAVLVRDGEIIAEGWNGSITNHDATAHAEIE 63

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            + +AG+          T YVTLEPC      P CA  ++   ++R+V    D     +G
Sbjct: 64  VIRKAGKALSNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAG 117

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164
             +   S         +   ++E E +  L A+  R+ ++          + +   
Sbjct: 118 TVMDLFSSQAAYHYATVEKGLLEEECRAQLQAFFQRRRKEIKAKRDAERKNAERKN 173


>gi|323499761|ref|ZP_08104720.1| tRNA-specific adenosine-34 deaminase [Vibrio sinaloensis DSM 21326]
 gi|323315002|gb|EGA68054.1| tRNA-specific adenosine-34 deaminase [Vibrio sinaloensis DSM 21326]
          Length = 179

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 22/171 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
            +  D  FM  A+  ++           V  ++VKDG +I  G     G      HAE+Q
Sbjct: 6   FTPQDELFMRRAMDLAKQAE--AEGEVPVGAVLVKDGEIIAEGWNQSIGQNDATAHAEIQ 63

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            L +AG+          T YVTLEPC      P CA  ++   ++R+V    D     +G
Sbjct: 64  TLRKAGQVLENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVFGAPDLKAGAAG 117

Query: 114 RGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
             L     +       +   ++E+E +  L A+  R+ +++ +       +
Sbjct: 118 TVLNLFEHQAAYHYADVERGLLETECRTQLQAFFKRRRKEKKNERKATRFT 168


>gi|262172118|ref|ZP_06039796.1| tRNA-specific adenosine-34 deaminase [Vibrio mimicus MB-451]
 gi|261893194|gb|EEY39180.1| tRNA-specific adenosine-34 deaminase [Vibrio mimicus MB-451]
          Length = 170

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 22/156 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
            S+ D +FM  A+  +            V  ++V+DG +I  G     T +    HAE++
Sbjct: 6   FSAQDEQFMRRAIMLAAQAE--EQGEVPVGAVLVRDGEIIAEGWNCSITHHDATAHAEIE 63

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            + +AG+          T YVTLEPC      P CA  ++   ++R+V    D     +G
Sbjct: 64  VIRKAGKVLSNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAG 117

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144
             +   +         +   ++E E +  L A+  R
Sbjct: 118 TVMDLFNSQASYHYATVEKGLLEEECRAQLQAFFQR 153


>gi|148981936|ref|ZP_01816576.1| cytosine/adenosine deaminase [Vibrionales bacterium SWAT-3]
 gi|145960698|gb|EDK26041.1| cytosine/adenosine deaminase [Vibrionales bacterium SWAT-3]
          Length = 181

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 22/167 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
            +  D  FM  A+  ++     +     V  ++VKDG VI  G     G      HAEV+
Sbjct: 6   FTPQDEIFMRRAIEVAKKAE--SEGEVPVGAVLVKDGEVISEGWNRSIGSHDATAHAEVE 63

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            L +AG+          T YVTLEPC      P CA  ++   ++R+V    D     +G
Sbjct: 64  TLRKAGQVLENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVFGAPDLKAGAAG 117

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
             L             +   ++E E +  L A+  R+ ++      +
Sbjct: 118 TVLNLFESQASYHYADVEHGLLEDECREQLQAFFKRRRKEIKEKRKQ 164


>gi|255279741|ref|ZP_05344296.1| tRNA-specific adenosine deaminase [Bryantella formatexigens DSM
           14469]
 gi|255269514|gb|EET62719.1| tRNA-specific adenosine deaminase [Bryantella formatexigens DSM
           14469]
          Length = 166

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 22/153 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQA 59
           S    +FM  A+R ++    L      + C+IV+DG +I RG            HAE+ A
Sbjct: 6   SKIHEKFMREAIRQAKKAYALDE--VPIGCVIVQDGKIIARGYNRRNTDKNTLSHAELIA 63

Query: 60  LEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           +++A ++       G T Y+TLEPC        CA  +++  +   V+   +P    +G 
Sbjct: 64  IKKAAKKTGDWRLEGCTMYITLEPC------QMCAGAMVQARLTEAVIGSMNPKAGCAGS 117

Query: 115 GLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
            L  L       +  +   ++E E    L  + 
Sbjct: 118 ILNILEMPEFNHQVQVTRGVLEEECSELLSRFF 150


>gi|153824574|ref|ZP_01977241.1| zinc-binding domain protein [Vibrio cholerae MZO-2]
 gi|149741792|gb|EDM55821.1| zinc-binding domain protein [Vibrio cholerae MZO-2]
          Length = 193

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 68/176 (38%), Gaps = 22/176 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
            S+ D +FM  A+  +            V  ++V+DG +I  G     T +    HAE++
Sbjct: 24  FSAQDEQFMRRAIVLAAQAEAQ--GEVPVGAVLVRDGEIIAEGWNGSITNHDATAHAEIE 81

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            + +AG+          T YVTLEPC      P CA  ++   ++R+V    D     +G
Sbjct: 82  VIRKAGKALSNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAG 135

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164
             L   S         +   ++E E +  L A+  R+ ++            +   
Sbjct: 136 TVLDLFSSQAAYHYATVEKGLLEEECRAQLQAFFQRRRKEIKAKRDAERKDAERKN 191


>gi|213616341|ref|ZP_03372167.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 127

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/126 (44%), Positives = 75/126 (59%), Gaps = 1/126 (0%)

Query: 41  VIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           ++G G     G PHAEV AL  AG +A+GATAYVTLEPCSH+GR+PPC   +I  G+ RV
Sbjct: 2   IVGEGYHHRAGEPHAEVHALRMAGAKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARV 61

Query: 101 VVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
           V  + DP+ +V+GRGL  L Q GI +   +M SE +     +L R      ++ LK+  S
Sbjct: 62  VAAMQDPNPQVAGRGLYRLQQAGIAVSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGAS 121

Query: 160 QDNMIG 165
            D    
Sbjct: 122 VDGRTA 127


>gi|86145643|ref|ZP_01063973.1| Cytosine/adenosine deaminase [Vibrio sp. MED222]
 gi|85836614|gb|EAQ54740.1| Cytosine/adenosine deaminase [Vibrio sp. MED222]
          Length = 212

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 68/176 (38%), Gaps = 22/176 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
            S  D  FM  A+  ++           V  ++VKDG VI  G     G      HAE++
Sbjct: 24  FSPQDEIFMRRAIEVAKQAE--KEGEVPVGAVLVKDGEVISEGWNRSIGCHDATAHAEIE 81

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            L +AG+          T YVTLEPC      P CA  ++   ++R+V    D     +G
Sbjct: 82  TLRKAGQALENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVFGAPDLKAGAAG 135

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164
             L             +   ++E E +  L A+  R+ ++         + ++  +
Sbjct: 136 TVLNLFESQASYHYADVEHGLLEEECREQLQAFFKRRRKEIKEKRKLERLQEEQRL 191


>gi|218245420|ref|YP_002370791.1| bifunctional deaminase-reductase domain-containing protein
           [Cyanothece sp. PCC 8801]
 gi|218165898|gb|ACK64635.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC
           8801]
          Length = 230

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 81/228 (35%), Gaps = 18/228 (7%)

Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV---- 200
              KR      +A++ D  I               K  +    +  D +L G  T+    
Sbjct: 1   MTIKRPQTVAILAITVDGKIADNQRHPARFGSDTDKAHLEKQISLVDGVLFGAATLAAYQ 60

Query: 201 ---LADDPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
              L  +PEL   R    +   P+ I++    K++ + +      +   ++ T     V 
Sbjct: 61  TTLLIKNPELLADRQQQKKPLQPINIVVSGSGKINPNLRFFSQE-VPRWLLTTMPGSIVA 119

Query: 257 ALAFRKKNINIIYCDCRDLKKL-----LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311
             +  +     I  D +DLKK+       +L   G+  + + GG  +  S +   L+D +
Sbjct: 120 KKSNHQAFEKTIIADSKDLKKIDFIKAFLVLKELGLNKVAILGGGELLASLLEVNLIDEL 179

Query: 312 ILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYI 355
            L    +++G    P+P+E         K    +  +    ++ L Y 
Sbjct: 180 WLTICPLILGGTTSPTPVEGLGFSYDQAKRLQLLTVESIDQEIFLHYR 227


>gi|226309631|ref|YP_002769525.1| tRNA specific adenosine deaminase [Brevibacillus brevis NBRC
           100599]
 gi|226092579|dbj|BAH41021.1| putative tRNA specific adenosine deaminase [Brevibacillus brevis
           NBRC 100599]
          Length = 160

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 22/156 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M   +    +M  A+  +R    +      +  +IV+DG ++GRG     T      HAE
Sbjct: 1   MIQENEHDYYMKQAMEEARKAAAI--GEVPIGAVIVRDGEIVGRGYNLRETQKDPTLHAE 58

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ EA     G    G T YVTLEPC      P CA  I++  I +VV    DP    
Sbjct: 59  LIAIREASERLGGWRLIGCTLYVTLEPC------PMCAGAIVQSRIEKVVYGARDPKAGC 112

Query: 112 SGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
           +G  +  L+      +  +++ ++  E    L  + 
Sbjct: 113 AGTLMNLLAEPRFNHQVPVIEGVLAEECGQMLKEFF 148


>gi|291549089|emb|CBL25351.1| Cytosine/adenosine deaminases [Ruminococcus torques L2-14]
          Length = 163

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 26/172 (15%)

Query: 5   SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
           + D ++M AAL+ +     +G T     + C+IV +  +I RG     T      HAEV 
Sbjct: 2   TTDEKYMRAALKQAEKAYNLGET----PIGCVIVHEDKIIARGYNRRNTDKNPLAHAEVA 57

Query: 59  ALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+++A ++         T YVTLEPC        CA  I++  I RVVV   +P    +G
Sbjct: 58  AIKKASKKLGDWRLEECTLYVTLEPCQM------CAGAIVQSRIPRVVVGCMNPKAGCTG 111

Query: 114 RGLQWL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
             L  L     + +  +   ++E E    +  +     E R       A S 
Sbjct: 112 SILNLLDIQAFNHQADLTTGVLEEECSQLMKQFFRELREARKMKKKAEAQSL 163


>gi|254411620|ref|ZP_05025396.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Microcoleus chthonoplastes PCC 7420]
 gi|196181342|gb|EDX76330.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Microcoleus chthonoplastes PCC 7420]
          Length = 233

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 77/222 (34%), Gaps = 14/222 (6%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA----- 202
            + H T+ +A+S D  I          +    +  +    A +D +L G GT+ A     
Sbjct: 8   NQPHTTVVLAMSADGKIADVTRSPARFSSSADQAHLESQVALADGVLFGAGTLRAYGTTR 67

Query: 203 --DDPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP--VLA 257
              + +L   R        P++I+     +     +     +   ++      +P    +
Sbjct: 68  SVSNSQLQQQRKQRGLPIQPVQIVCSRLAQFDPQLRFFHQNVPRWLLTTEAGAEPWRDKS 127

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
             F +  +     D  +       L   G+  L V GG  +  S + + L+D +      
Sbjct: 128 DYFERILVVNASSDGINWHDAYQQLNQLGIQRLAVLGGGNLVASLLAADLIDELWFTVCP 187

Query: 318 IVIGEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVCLEYI 355
           +++G    P+P+E       L K    +  +    ++ L Y 
Sbjct: 188 LILGGAAAPTPVEGTGFSEQLAKRLELLAVERVDQELFLHYR 229


>gi|187735588|ref|YP_001877700.1| CMP/dCMP deaminase zinc-binding [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425640|gb|ACD04919.1| CMP/dCMP deaminase zinc-binding [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 181

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 63/157 (40%), Gaps = 23/157 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M +   D  FM  A++ SR    L      V  ++VKDG VIGRG     T      HAE
Sbjct: 7   MEMPGSDEWFMRQAMKESRKA--LVKGEVPVGAIVVKDGRVIGRGWNQVETLKDATAHAE 64

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL  A E        G T YVT EPC      P CA  I+ C   RVV    D     
Sbjct: 65  MIALTAAQEALGDWRLEGCTLYVTKEPC------PMCAGAIVHCRPDRVVFGCPDAKTGA 118

Query: 112 SGRGLQW------LSQKGIIVDRMMESEGKIFLHAYL 142
           +G  +        L+ K  +   ++  E  + L  + 
Sbjct: 119 AGGWINLLDSNPPLNHKCEVRPGVLGDECLLHLQEFF 155


>gi|330830279|ref|YP_004393231.1| CMP/dCMP deaminase zinc-binding protein [Aeromonas veronii B565]
 gi|328805415|gb|AEB50614.1| CMP/dCMP deaminase zinc-binding protein [Aeromonas veronii B565]
          Length = 201

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 69/175 (39%), Gaps = 22/175 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57
             +  D ++M  A+  +    G+      V  ++V DG V+G G       +  C HAEV
Sbjct: 33  SQTEQDEQWMRHAMALAARAEGI--GEIPVGAVLVLDGQVVGEGWNRSISEHDACAHAEV 90

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+  AG++         T YVTLEPC        CA  +I   ++RVV    D     +
Sbjct: 91  MAIRAAGKQLANYRLLDTTLYVTLEPCCM------CAGALIHSRVKRVVYGARDLKTGAA 144

Query: 113 GRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           G   + L          ++  ++       L A+  R+  ++    L +  S D 
Sbjct: 145 GSVFEILQDPRHNHSVELIGGVLADACSAQLSAFFKRRRAEKKAAKLALQQSNDT 199


>gi|325264602|ref|ZP_08131332.1| cytidine/deoxycytidylate deaminase family protein [Clostridium sp.
           D5]
 gi|324030264|gb|EGB91549.1| cytidine/deoxycytidylate deaminase family protein [Clostridium sp.
           D5]
          Length = 159

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
           + D ++M  A+R ++    L      + C+IV    +IGRG            HAE+ A+
Sbjct: 2   NADEKYMKEAIRQAKKAYAL--EEVPIGCVIVYQDKIIGRGYNRRTIDKNPLAHAELTAI 59

Query: 61  EEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A ++         T YVTLEPC        C+  II+  ++RVVV   +P    +G  
Sbjct: 60  RRASKKLNDWRLEECTLYVTLEPCQM------CSGAIIQARVQRVVVGCMNPKAGCAGSI 113

Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
           L  L       +  +   ++E E    +  + 
Sbjct: 114 LNLLEMKEFNHQAELTTGVLEKECSTMMKQFF 145


>gi|261252226|ref|ZP_05944799.1| tRNA-specific adenosine-34 deaminase [Vibrio orientalis CIP 102891]
 gi|260935617|gb|EEX91606.1| tRNA-specific adenosine-34 deaminase [Vibrio orientalis CIP 102891]
          Length = 178

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 22/154 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
            +  D RFM  A+  +      T     V  ++VKDG +I  G     G      HAE+Q
Sbjct: 6   FTPQDERFMRRAMELAAHAE--TQGEVPVGAVLVKDGEIIAEGWNESIGQHDATAHAEMQ 63

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            + +AGE          T YVTLEPC      P CA  ++   ++R+V    D     +G
Sbjct: 64  TIRKAGEVLENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVFGAPDLKAGAAG 117

Query: 114 RGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
             L     +       +   ++E E ++ L A+ 
Sbjct: 118 TVLNLFEHQAAYHYADVEKGLLEDECRVQLQAFF 151


>gi|54025702|ref|YP_119944.1| hypothetical protein nfa37320 [Nocardia farcinica IFM 10152]
 gi|54017210|dbj|BAD58580.1| putative deaminase/reductase [Nocardia farcinica IFM 10152]
          Length = 259

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 73/235 (31%), Gaps = 21/235 (8%)

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           Y          + +    S D     +G  +  +     K    LLR  +D +LVG GTV
Sbjct: 28  YAYPMGLADPWVRVNFVASIDG-AATSGDVTAALGTPADKRVFKLLRDLADVVLVGAGTV 86

Query: 201 LADD-------------PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
             ++                  R        P   ++     L    +++    + P+II
Sbjct: 87  RTENYGGARTDAARRRSLHDRSRGGHPDGAPPPIAVVTATAALEPTCRLLTDTTVPPLII 146

Query: 248 VTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
                              +I         K LL  L  RG+  +L EGG  +    I +
Sbjct: 147 TAAAAPADRKEKLAAAGAEVIEAGEAAVTPKALLAALAERGLHRVLCEGGPHLFGQLIEA 206

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD---VCLEYIGK 357
            LVD + L  + +++G       L      ++    RR     D   V   +  +
Sbjct: 207 DLVDELCLTTAPVLVGGTAGRISLSAREFHQHMH--RRHMILDDDGTVLTRWARR 259


>gi|320157222|ref|YP_004189601.1| tRNA-specific adenosine-34 deaminase [Vibrio vulnificus MO6-24/O]
 gi|319932534|gb|ADV87398.1| tRNA-specific adenosine-34 deaminase [Vibrio vulnificus MO6-24/O]
          Length = 181

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 71/172 (41%), Gaps = 22/172 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P S  D  FM  A+  +   +  +     V  ++VKDG VI  G     G      HAE+
Sbjct: 7   PFSLQDEVFMRRAIELA--AIAESEGEVPVGAVLVKDGEVIAEGWNQSIGQHDATAHAEI 64

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           Q L +AG+          T YVTLEPC      P CA  ++   ++R+V    D     +
Sbjct: 65  QTLRQAGQSLGNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVFGAPDLKAGAA 118

Query: 113 GRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
           G  L   S         I   ++ESE +  L A+  R+ ++   +  ++   
Sbjct: 119 GTVLDLFSSQAAYHYATIEKGLLESECRDQLQAFFKRRRKEIKALKKELQTQ 170


>gi|218708682|ref|YP_002416303.1| tRNA-specific adenosine deaminase [Vibrio splendidus LGP32]
 gi|218321701|emb|CAV17655.1| tRNA-specific adenosine deaminase [Vibrio splendidus LGP32]
          Length = 212

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 64/165 (38%), Gaps = 22/165 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
            S  D  FM  A+  ++           V  ++VKDG VI  G     G      HAE++
Sbjct: 24  FSPQDEIFMRRAIEVAKQAE--KEGEVPVGAVLVKDGEVISEGWNRSIGCHDATAHAEIE 81

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            L +AG+          T YVTLEPC      P CA  ++   ++R+V    D     +G
Sbjct: 82  TLRKAGQALENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVFGAPDLKAGAAG 135

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHIT 153
             L             +   ++E E +  L A+  R+ ++     
Sbjct: 136 TVLNLFESQASYHYADVEHGLLEEECREQLQAFFKRRRKEIKEKR 180


>gi|317125029|ref|YP_004099141.1| bifunctional deaminase-reductase domain protein [Intrasporangium
           calvum DSM 43043]
 gi|315589117|gb|ADU48414.1| bifunctional deaminase-reductase domain protein [Intrasporangium
           calvum DSM 43043]
          Length = 254

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 51/203 (25%), Positives = 78/203 (38%), Gaps = 17/203 (8%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD------ 203
             +   +  + D         S  I          LLR  S A++VG GT+ A+      
Sbjct: 32  PWLRCNMVTTVDGGATGPDGRSGSINTAADHIVFELLRGLSHAVIVGAGTIRAEGYTGLT 91

Query: 204 ---DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA- 259
              D     R  G+ E  P+ I +    +L   +   + A   P ++ T    P LA A 
Sbjct: 92  VSPDVLPLRRDLGIDEPLPL-IAVSRSGRLPESA---QGAAGGPALLATCARAPGLAEAQ 147

Query: 260 --FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
               ++++ +   D  DL  L+  L  RG T LL EGG  +  SF+  RLVD +    + 
Sbjct: 148 SILGREHVLVCGEDEVDLPLLVARLHERGWTRLLCEGGPHLTGSFLAVRLVDELCFTIAP 207

Query: 318 IVIGEGGIPSPLEEGYLEKNFMC 340
            V+G G  P P+           
Sbjct: 208 RVVG-GMHPRPVGPAASPLELEL 229


>gi|20806575|ref|NP_621746.1| cytosine/adenosine deaminase [Thermoanaerobacter tengcongensis MB4]
 gi|20515016|gb|AAM23350.1| Cytosine/adenosine deaminases [Thermoanaerobacter tengcongensis
           MB4]
          Length = 148

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 64/148 (43%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA- 63
           +FM  AL+ ++    L      V  +IVKDG +I RG            HAE+ A+ EA 
Sbjct: 4   KFMEEALKEAKKSYEL--GEVPVGAVIVKDGEIIARGHNQKESSKDATAHAEIIAIREAC 61

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                      + YVTLEPC      P CA  I+E  I+RV +  + P    +G  +  L
Sbjct: 62  RRLGSWRLEDCSLYVTLEPC------PMCAGAIVEARIKRVYIGTESPKEGAAGSVINIL 115

Query: 120 SQKGI-----IVDRMMESEGKIFLHAYL 142
           + K +     +   +ME E K  L  + 
Sbjct: 116 NNKELGTSTEVYFGIMEEEAKELLKKFF 143


>gi|167629244|ref|YP_001679743.1| cytidine and deoxycytidylate deaminase zinc-binding region protein,
           putative [Heliobacterium modesticaldum Ice1]
 gi|167591984|gb|ABZ83732.1| cytidine and deoxycytidylate deaminase zinc-binding region protein,
           putative [Heliobacterium modesticaldum Ice1]
          Length = 152

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/156 (32%), Positives = 69/156 (44%), Gaps = 22/156 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
           ++  D +FM  AL   R           + C+IVKDG VIGRG     T      HAEV 
Sbjct: 1   MALADDKFMGLALEEGRQA--YAKGEVPIGCVIVKDGEVIGRGHNLRETEKNPVAHAEVL 58

Query: 59  ALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+++A     G    GAT YVT+EPC      P CA  I+   I RVV  V DP    +G
Sbjct: 59  AIQDAANRIGGWRLAGATLYVTVEPC------PMCAGAIVLARIPRVVFAVMDPKGGAAG 112

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144
                L       +  ++  + E E +  + ++  R
Sbjct: 113 TCFNILESPWTNHRVSVISGVREGEARELMQSFFQR 148


>gi|291301495|ref|YP_003512773.1| bifunctional deaminase-reductase domain-containing protein
           [Stackebrandtia nassauensis DSM 44728]
 gi|290570715|gb|ADD43680.1| bifunctional deaminase-reductase domain protein [Stackebrandtia
           nassauensis DSM 44728]
          Length = 242

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 51/209 (24%), Positives = 80/209 (38%), Gaps = 17/209 (8%)

Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203
                         VS  +        S  ++G        +LR + D ++VG GTV  D
Sbjct: 18  WYAPSAPDWLRVNFVSSADGAVEVNGDSKALSGEDDMRVFRILRMRCDVLVVGAGTVRTD 77

Query: 204 ---DPELT------CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN-DD 253
                 L+       R  GL +H P+  ++     L LD+ + + A + P++I  E+ D 
Sbjct: 78  GYRALRLSQDRVEWRRAAGLPDH-PVMAVVSRSGILDLDTPLFREAPVRPIVITPEDLDA 136

Query: 254 PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
             LA      ++        D  +    L  RG+  +L EGG  V      + LVD + L
Sbjct: 137 KRLAELSDVADVVAAGTGSVDFAEAFERLRQRGLRQILCEGGPHVFGEITAAGLVDELCL 196

Query: 314 YRSQIVIGEG------GIPSPLEEGYLEK 336
             S  + G G      G PSPL+  +L  
Sbjct: 197 TLSPHLAGAGSGRITAGPPSPLKRMHLAH 225


>gi|90410888|ref|ZP_01218902.1| Putative cytosine/adenosine deaminase [Photobacterium profundum
           3TCK]
 gi|90328101|gb|EAS44412.1| Putative cytosine/adenosine deaminase [Photobacterium profundum
           3TCK]
          Length = 175

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 22/172 (12%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
           + D  +M  A+  +            V  ++V +G V+G G       +    HAE+ AL
Sbjct: 12  NHDELYMRRAIELA--SQAEAEGEVPVGAVVVYEGRVVGEGWNRSIGQHDATAHAEMMAL 69

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +AG+         AT YVTLEPC      P CA  ++   I +V+    D     +G  
Sbjct: 70  RQAGKVIQNYRLLDATLYVTLEPC------PMCAGAMVHSRIGKVIFGASDLKTGAAGSV 123

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           +  L     +        +++ E +  L A+  R+  ++         + DN
Sbjct: 124 MNLLSYDEVNHHVDCQAGVLDEECRAQLQAFFKRRRAEKKAEKKARQAALDN 175


>gi|225575495|ref|ZP_03784105.1| hypothetical protein RUMHYD_03586 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037292|gb|EEG47538.1| hypothetical protein RUMHYD_03586 [Blautia hydrogenotrophica DSM
           10507]
          Length = 183

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
            ++M  A+R ++    L      + C+IV DG +I RG     T      HAE+ A+++A
Sbjct: 28  EKYMREAIRQAKKAWALDEV--PIGCVIVFDGKIIARGYNRRNTDRNTLSHAELNAIKKA 85

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            ++       G T YVTLEPC        CA  I++  I  VV+   +P    +G  L  
Sbjct: 86  SKKLGDWRLEGCTMYVTLEPC------QMCAGAIVQARIDEVVIGSMNPKAGCAGSVLNL 139

Query: 119 L-----SQKGIIVDRMMESEGKIFLHAYL 142
           L     + +  I   +++ E    L  + 
Sbjct: 140 LDIPQFNHQVKITRGILQEECSALLSDFF 168


>gi|167758650|ref|ZP_02430777.1| hypothetical protein CLOSCI_00991 [Clostridium scindens ATCC 35704]
 gi|167663846|gb|EDS07976.1| hypothetical protein CLOSCI_00991 [Clostridium scindens ATCC 35704]
          Length = 157

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 22/154 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQ 58
           + S D ++M  A+R +R    +      + C+IV    +IGRG            HAE+ 
Sbjct: 1   MHSIDEKYMKEAIRQARKAYAI--GEVPIGCVIVYKDKIIGRGYNRRMADKNTLSHAELI 58

Query: 59  ALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+ +A  +         T YVTLEPC        C+  I++  + RVVV   +P    +G
Sbjct: 59  AIRKASRKMGDWRLEECTMYVTLEPC------QMCSGAIVQSRMSRVVVGCMNPKAGCAG 112

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
             L  L       +  +   ++E E    +  + 
Sbjct: 113 SILNLLQMTEFNHQAELTTGVLEEECSQMMKDFF 146


>gi|297380640|gb|ADI35527.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori v225d]
          Length = 276

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 109/278 (39%), Gaps = 47/278 (16%)

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG-RGLQWLSQKGIIV 126
           +     +TLEPC+ YG++P C+  +     +RVV+  ++ + +  G   LQ    +G++ 
Sbjct: 27  KDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIATEENEAKKGGLARLQKARIEGVVC 86

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
           + +      + L   +  Q  + +   L + ++ D   G        ITG  S    H  
Sbjct: 87  ESLENKAKDLLLPFRIMEQKGRFNLFKLALRMNGDYHHG-------KITGQKSVIFTHNQ 139

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
           RA  D ++V   T+  D+P L  R      Q  +P   IL  H  +  +SK+        
Sbjct: 140 RAICDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPNIAILSKH-SIDPNSKVFSAPN--- 195

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
                             + +N+ Y D +DL       + +G     +EGG  +  S  +
Sbjct: 196 ------------------RLVNVFY-DPKDLP------LEKGFN--FIEGGWELFESLRD 228

Query: 305 SRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNF 338
              +D+++L+    +I E      + +P +   L    
Sbjct: 229 K--IDALLLHSHASMISEAFSAFALKTPFKGRLLHAQI 264


>gi|313905719|ref|ZP_07839079.1| Cof-like hydrolase [Eubacterium cellulosolvens 6]
 gi|313469426|gb|EFR64768.1| Cof-like hydrolase [Eubacterium cellulosolvens 6]
          Length = 450

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQAL 60
           +   ++M AA+R ++     +     +  +IV+DG +I RG            HAE+ AL
Sbjct: 296 AVMEKYMRAAIREAKRAA--SIGEVPIGAVIVRDGEIIARGYNRRNTDHNTLSHAELNAL 353

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A ++       G T YVT+EPC        CA  +++  I +VV+    P    +G  
Sbjct: 354 RKASKKLGDWRLEGCTMYVTMEPCQM------CAGALVQSRIDKVVIGCMSPKTGCAGSV 407

Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
           +  +          +   ++E E    L  + 
Sbjct: 408 MNLMQVPVFNHSVELEKGILEEECSRILTEFF 439


>gi|266621805|ref|ZP_06114740.1| tRNA-specific adenosine deaminase [Clostridium hathewayi DSM 13479]
 gi|288866494|gb|EFC98792.1| tRNA-specific adenosine deaminase [Clostridium hathewayi DSM 13479]
          Length = 165

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
           + D ++M AA+  +R   G     P + C+IV +  +I RG            HAE+ A+
Sbjct: 2   NADEKYMRAAIGQARKA-GAIGEVP-IGCVIVYEDKIIARGYNRRTIDKNVLSHAEIIAI 59

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           ++A ++       G T YVTLEPC      P CA  I++  I +VV+   +P    +G  
Sbjct: 60  KKACKKIGDWRLEGCTMYVTLEPC------PMCAGAIVQARIPKVVIGCMNPKAGCAGSV 113

Query: 116 LQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
           L  L + G      +   ++E E    +  + 
Sbjct: 114 LDLLHEDGFNHQVEMEKGVLEEECSRLMKEFF 145


>gi|153813521|ref|ZP_01966189.1| hypothetical protein RUMOBE_03942 [Ruminococcus obeum ATCC 29174]
 gi|149830392|gb|EDM85484.1| hypothetical protein RUMOBE_03942 [Ruminococcus obeum ATCC 29174]
          Length = 164

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 22/172 (12%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEAGEE 66
           M  A+R ++    L      + C+IV DG +I RG            HAE+ A+ +A ++
Sbjct: 1   MKEAIRQAKKARAL--EEVPIGCVIVSDGKIIARGYNRRNTDKNTLSHAELNAIRKASKK 58

Query: 67  -----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS- 120
                  G T YVTLEPC        CA  +++  I  VV+   +P    +G  L  L  
Sbjct: 59  LGDWRLEGCTMYVTLEPCQM------CAGALVQSRIDEVVIGSMNPKAGCAGSVLNLLQV 112

Query: 121 ----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG 168
                +  I   ++E E  + L  +     EK+  + +      +     A 
Sbjct: 113 DNFNHQVKITRGVLEEECSMMLSDFFRELREKKKRLKMLAKQQAEQEQTRAD 164


>gi|225026664|ref|ZP_03715856.1| hypothetical protein EUBHAL_00916 [Eubacterium hallii DSM 3353]
 gi|224956034|gb|EEG37243.1| hypothetical protein EUBHAL_00916 [Eubacterium hallii DSM 3353]
          Length = 178

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 22/158 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56
           M   + D +FM  A++ ++    +      + C+IV DG +I RG            HAE
Sbjct: 6   MRKYTEDEKFMKEAIKQAKKAEAIGDV--PIGCVIVHDGKIIARGYNKRNKDKTVLAHAE 63

Query: 57  VQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+++A ++         T Y+TLEPC        CA  I++  + RVV+   +     
Sbjct: 64  LLAMKKACKKLGDWRLEDCTMYITLEPCQM------CAGAIVQARVTRVVIGSMNAKAGC 117

Query: 112 SGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144
            G  L  L       +  +   +++ E    L A+  +
Sbjct: 118 GGSILNLLEMQEFNHQAEVERGVLQEECSEMLSAFFRK 155


>gi|225387328|ref|ZP_03757092.1| hypothetical protein CLOSTASPAR_01081 [Clostridium asparagiforme
           DSM 15981]
 gi|225046577|gb|EEG56823.1| hypothetical protein CLOSTASPAR_01081 [Clostridium asparagiforme
           DSM 15981]
          Length = 162

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 65/164 (39%), Gaps = 22/164 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
           + D R+M  A+R ++    L      + C+IV +  +I RG            HAE+ A+
Sbjct: 2   TTDERYMKEAVRQAKKASAL--GEVPIGCVIVYEDKIIARGYNRRMVDQNVLSHAEIIAI 59

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A ++         T YVTLEPC      P CA  I++  + +VV+   +P    +G  
Sbjct: 60  RKACKKMGDWRLENCTLYVTLEPC------PMCAGAIVQARVPQVVIGCMNPKAGCAGSV 113

Query: 116 LQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITL 154
           L  L + G          ++  E    +  +      K+     
Sbjct: 114 LDMLHEDGFNHQVETKIGILGEECSAMMKEFFRALRVKKPKKKR 157


>gi|111018655|ref|YP_701627.1| hypothetical protein RHA1_ro01656 [Rhodococcus jostii RHA1]
 gi|110818185|gb|ABG93469.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodococcus
           jostii RHA1]
          Length = 245

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 78/223 (34%), Gaps = 11/223 (4%)

Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
                        V+  +     G    P++  +    +  +RA +D +LVG GTV A+ 
Sbjct: 19  FYRDPPDGVRVNMVASLDGAAAFGGRVRPLSDPVDHQLLRAMRAYADVVLVGAGTVRAET 78

Query: 205 --P-ELT---CRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
             P +LT    R      GL    P+ ++      +  DS +    +   V+      + 
Sbjct: 79  YGPVQLTEEQARYRLERWGLDAPPPIAVV-TRTGNVPPDSPLFAGGVRPIVVTTRRVAET 137

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
             A      +I +   D  ++  L+  L  RG   +L EGG  + H  +   LVD + L 
Sbjct: 138 RGAALGESADIVVAGDDSVEMPALMAALRDRGFGRILCEGGPTLLHDLVTHDLVDEMCLT 197

Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
            +  + G   +P+           + +       D      G+
Sbjct: 198 LAPRLAGPQTLPASSGPTVQAPRTLSLEHALINDDFLYLRYGR 240


>gi|260776578|ref|ZP_05885473.1| tRNA-specific adenosine-34 deaminase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607801|gb|EEX34066.1| tRNA-specific adenosine-34 deaminase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 169

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 60/156 (38%), Gaps = 22/156 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
            S  D  FM  A+  +            V  ++VK G ++  G     G      HAE+Q
Sbjct: 6   FSPQDEFFMRRAMELAAQAE--AEGEVPVGAVLVKGGEIVAEGWNQSIGHHDATAHAEMQ 63

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            L +AG+          T YVTLEPC      P CA  ++   ++R+V    D     +G
Sbjct: 64  VLRKAGQVLENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAG 117

Query: 114 RGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTR 144
             L     +       I   +ME E +  L A+  R
Sbjct: 118 TVLNLFEHQAAYHYADIEQGLMEEECRGQLQAFFKR 153


>gi|166031359|ref|ZP_02234188.1| hypothetical protein DORFOR_01047 [Dorea formicigenerans ATCC
           27755]
 gi|166028764|gb|EDR47521.1| hypothetical protein DORFOR_01047 [Dorea formicigenerans ATCC
           27755]
          Length = 157

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
           + D ++M  A++ ++    +      + C+IV    +I RG            HAE+QA+
Sbjct: 2   TADEKYMREAIKQAKKAYAI--GEVPIGCVIVYQDKIIARGYNRRTIDKNTLAHAELQAI 59

Query: 61  EEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A ++         T YVTLEPC        C+  I++  + RVVV   +P    +G  
Sbjct: 60  RKASKKMEDWRLEECTMYVTLEPCQM------CSGAIVQSRMTRVVVGCMNPKAGCAGSI 113

Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
           L  L       +  +   ++E E    +  + 
Sbjct: 114 LNLLQMPQFNHQVELTTGVLEEECSQMMKTFF 145


>gi|293376812|ref|ZP_06623032.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Turicibacter sanguinis PC909]
 gi|325845379|ref|ZP_08168678.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Turicibacter sp. HGF1]
 gi|292644564|gb|EFF62654.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Turicibacter sanguinis PC909]
 gi|325488594|gb|EGC91004.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Turicibacter sp. HGF1]
          Length = 162

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 61/147 (41%), Gaps = 22/147 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
           +M AA+  ++    L      +  +IVKDG +I RG     T+     HAE+ A+ +A E
Sbjct: 6   YMQAAIEEAKKAQNL--GEVPIGAVIVKDGEIIARGYNLRETSQLSNAHAEMIAIAKANE 63

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL- 119
                     T YVTLEPC      P CA  I++  I  VV    DP     G     L 
Sbjct: 64  MVGSWRLEDCTLYVTLEPC------PMCAGAIVQSRIPTVVFGAHDPKGGCCGTIYNLLD 117

Query: 120 ----SQKGIIVDRMMESEGKIFLHAYL 142
               + +  +V  ++E E    L  + 
Sbjct: 118 ESKFNHRCELVSGVLEEECGQLLSDFF 144


>gi|209694336|ref|YP_002262264.1| tRNA-specific adenosine deaminase [Aliivibrio salmonicida LFI1238]
 gi|208008287|emb|CAQ78433.1| tRNA-specific adenosine deaminase [Aliivibrio salmonicida LFI1238]
          Length = 177

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 62/159 (38%), Gaps = 27/159 (16%)

Query: 3   VSSFDA-----RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CP 53
           ++  D       +M  A+  +    G       V  +IV +G +IG G     G      
Sbjct: 1   MTDLDENKSATFYMQRAIELASIAEG--EGEVPVGAVIVLNGEIIGEGWNRSIGTHDATA 58

Query: 54  HAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+ A+++AG+         AT YVTLEPC      P CA  I++  I++V     D  
Sbjct: 59  HAEMMAIKQAGQTVENYRLVNATLYVTLEPC------PMCAGAIVQSRIKQVFFGAADLK 112

Query: 109 VRVSGRGLQWLSQK-----GIIVDRMMESEGKIFLHAYL 142
              SG  +   +             +M  E +  L A+ 
Sbjct: 113 TGASGSVINLFTAATAFHFVECESGLMADECREQLQAFF 151


>gi|284046137|ref|YP_003396477.1| bifunctional deaminase-reductase domain protein [Conexibacter
           woesei DSM 14684]
 gi|283950358|gb|ADB53102.1| bifunctional deaminase-reductase domain protein [Conexibacter
           woesei DSM 14684]
          Length = 250

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 74/207 (35%), Gaps = 10/207 (4%)

Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203
           R   +R  + +  A + D  I + G  S  I           LR Q+DA+LVG GT+ A+
Sbjct: 27  RAPAERPFVAVNFAATVDGRIAL-GGRSGAIGDDGDTEVFRRLRTQADALLVGTGTLAAE 85

Query: 204 -------DPEL-TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
                    EL   R        P  +++    +L L+  + +      ++      +P 
Sbjct: 86  QYSRPIRRAELRAAREAIGLAPVPPLVVIARSGRLPLEIPLFQDPDAHAIVYTEVATEPP 145

Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
              A  +            L   L  L    GV SLL EGG  +    ++  LVD + L 
Sbjct: 146 AVPARVELQRIDPAAGEPTLTAALRHLRREHGVRSLLCEGGPQLLSGLLHEGLVDELFLT 205

Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCV 341
            +  + G GG P+      L       
Sbjct: 206 VAPQLAGGGGEPTLTGGTALPSPAELT 232


>gi|298293688|ref|YP_003695627.1| bifunctional deaminase-reductase domain protein [Starkeya novella
           DSM 506]
 gi|296930199|gb|ADH91008.1| bifunctional deaminase-reductase domain protein [Starkeya novella
           DSM 506]
          Length = 241

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 60/209 (28%), Positives = 97/209 (46%), Gaps = 14/209 (6%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
                 +  ++  S D  I      S  I G    + +H LRA +D ++VG+GTVLADDP
Sbjct: 21  HRPSPFVIAQLGQSLDGRIATPTGKSRDINGCCGMDHLHRLRAIADVVVVGVGTVLADDP 80

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
           +LT R   +   SP R ++DP  + S  S+ ++       I+ +EN           + I
Sbjct: 81  QLTTRR--VPGRSPARAVIDPSGRSSRQSRWLREDGCRR-IVFSENAH---GWPDEVERI 134

Query: 266 NIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
              +     +  +L+  L  RG  ++LVEGGA+    FI++ +VD + +  S I++G  G
Sbjct: 135 GTDHDPAIFEPARLIAALAARGHRTVLVEGGASTISRFIDAGVVDRLHVCLSPIILGS-G 193

Query: 325 IPS----PLEEGYLEKNFMCVRRDYFGSD 349
            P     P++E  L+       R Y   D
Sbjct: 194 RPGLDLRPIDE--LDDALRPRARTYLLDD 220


>gi|304311855|ref|YP_003811453.1| Cytidine/deoxycytidylate deaminase, zinc-binding protein [gamma
           proteobacterium HdN1]
 gi|301797588|emb|CBL45809.1| Cytidine/deoxycytidylate deaminase, zinc-binding protein [gamma
           proteobacterium HdN1]
          Length = 171

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/128 (32%), Positives = 54/128 (42%), Gaps = 17/128 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
            S+ D R+M  AL  +R   G  +    V  ++V+DG  IG G     G      HAE+ 
Sbjct: 15  FSAEDRRWMERALALAR--QGAEAGEVPVGAVVVRDGEAIGEGFNCPIGTHDPTAHAEIC 72

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL  AG         GAT YV+LEPC+       CA  I+   I RVV    +P      
Sbjct: 73  ALRAAGRAIENYRLAGATLYVSLEPCAM------CAGAIVHARIDRVVYAAMEPKAGAVA 126

Query: 114 RGLQWLSQ 121
               +  Q
Sbjct: 127 STQNFFEQ 134


>gi|160914820|ref|ZP_02077034.1| hypothetical protein EUBDOL_00828 [Eubacterium dolichum DSM 3991]
 gi|158433360|gb|EDP11649.1| hypothetical protein EUBDOL_00828 [Eubacterium dolichum DSM 3991]
          Length = 152

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 22/151 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
            +FM  A++ ++    +      + C+IVKD  +I RG            HAE+ A+E+A
Sbjct: 3   EKFMVEAIKEAKKAELIDEV--PIGCVIVKDDKIIARGHNLRESKQRSTAHAEIIAIEKA 60

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
             + +     G + YVTLEPC      P C+  I++  I  VV    DP        +  
Sbjct: 61  CRKLKSWRLEGCSLYVTLEPC------PMCSGAILQSRIEHVVYGAKDPKGGCMESCMNM 114

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYLTR 144
              KG      ++  ++E E    L  +  R
Sbjct: 115 YEVKGFNHYPDVIGGVLEDECGSLLKTFFKR 145


>gi|19113382|ref|NP_596590.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Schizosaccharomyces pombe 972h-]
 gi|54036317|sp|Q9P7L3|RIB7_SCHPO RecName: Full=Putative 5-amino-6-(5-phosphoribosylamino)uracil
           reductase; AltName: Full=HTP reductase
 gi|7106075|emb|CAB76046.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Schizosaccharomyces pombe]
          Length = 268

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 77/235 (32%), Gaps = 28/235 (11%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
               I      ++     G + ++   S    HLLR + D I+VG  T   D+P LT +L
Sbjct: 21  WAQSINGRIGYVVESPSLGQLRLSSKESFVMTHLLRTKFDGIMVGSRTAENDNPSLTAKL 80

Query: 212 NGLQ--------EHSPMRIILDPHFKLSLDS-KIIKTALL----APVIIV---------T 249
                          P+ II+D + +L   S K+I+ A       P+IIV          
Sbjct: 81  PDPANPDCLLPLNKQPIPIIVDSNLRLDYASLKVIRLARERLGKPPLIIVAPSIWQQVQH 140

Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKK-----LLTILVGRGVTSLLVEGGAAVAHSFIN 304
           ++         +      I  +            L  L+  GV  ++VEGGA +      
Sbjct: 141 DSKLKEAVKLIQSVGGRCIIRNEDSPDSWSDYVALDKLLQNGVNRIMVEGGAELLAKAFG 200

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
           S  +D+ ++     +       + ++                G DV         
Sbjct: 201 STDIDAYVVTIVPKIF-SCSNTTEIKNLNNLNLTTNSHWYPCGPDVIFTNYSDEF 254


>gi|330445259|ref|ZP_08308911.1| tRNA-specific adenosine deaminase monomer [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328489450|dbj|GAA03408.1| tRNA-specific adenosine deaminase monomer [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 163

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 22/148 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEE 66
           M  A+  +    G       V  ++V +G VIG G       +    HAE+ AL +AG+ 
Sbjct: 1   MRRAMELAAKAEG--EGEVPVGAVVVHNGQVIGEGWNRSIGQHDATAHAEIMALRQAGKV 58

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                    T YVTLEPC      P CA  ++   + +VV   DD     +G  +  LS 
Sbjct: 59  LENYRLLDTTVYVTLEPC------PMCAGAMVHSRVGKVVYGADDLKTGAAGSTMNLLSY 112

Query: 122 KGI-----IVDRMMESEGKIFLHAYLTR 144
            G+     +V  ++  E +  L A+  R
Sbjct: 113 DGVNHHVGLVSGVLADECRAQLQAFFKR 140


>gi|238922727|ref|YP_002936240.1| cytidine and deoxycytidylate deaminase family protein [Eubacterium
           rectale ATCC 33656]
 gi|238874399|gb|ACR74106.1| cytidine and deoxycytidylate deaminase family protein [Eubacterium
           rectale ATCC 33656]
          Length = 162

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 19/131 (14%)

Query: 1   MPVSSF--DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPH 54
           M  ++   D ++M  A++ ++    L      + C+IV    +I RG     T      H
Sbjct: 1   MEQTNMTQDEKYMKQAIKQAKKAYALDEV--PIGCVIVAGDKIIARGYNRRNTDKNPLAH 58

Query: 55  AEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AE+ A+ +A ++         T YVTLEPC        CA  I++  I RVV+   +P  
Sbjct: 59  AELSAIRKASKKTGDWRLEECTMYVTLEPCQM------CAGAIVQARIPRVVIGAMNPKA 112

Query: 110 RVSGRGLQWLS 120
             +G  +  L 
Sbjct: 113 GCAGSIINLLQ 123


>gi|218283248|ref|ZP_03489309.1| hypothetical protein EUBIFOR_01897 [Eubacterium biforme DSM 3989]
 gi|218216003|gb|EEC89541.1| hypothetical protein EUBIFOR_01897 [Eubacterium biforme DSM 3989]
          Length = 158

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 22/156 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
           ++  D ++M  A++ ++     +     + C+IVKD  +I RG     T      HAE+ 
Sbjct: 1   MNMDDVKWMKEAIKQAKKAE--SYDEVPIGCVIVKDDKIIARGYNKRETLQQSIAHAEIM 58

Query: 59  ALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+++A ++           YVTLEPC      P CA  II+  I+ VV    DP     G
Sbjct: 59  AIQKACKKLGTWRLEDCVLYVTLEPC------PMCAGAIIQSRIKEVVYGASDPKGGCVG 112

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144
                          I    ++ES+    L  +  +
Sbjct: 113 TCTNLFEVSEFNHHPIYRRGILESDCSDLLKHFFKK 148


>gi|84388906|ref|ZP_00991114.1| Cytosine/adenosine deaminase [Vibrio splendidus 12B01]
 gi|84376970|gb|EAP93842.1| Cytosine/adenosine deaminase [Vibrio splendidus 12B01]
          Length = 194

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 22/165 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
            +  D  FM  A+  ++           V  ++VK+G +I  G     G      HAE++
Sbjct: 6   FTPQDEIFMRRAIEVAKQAE--KEGEVPVGAVLVKEGEIISEGWNRSIGSHDATAHAEIE 63

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            L +AG+          T YVTLEPC      P CA  ++   ++R+V    D     +G
Sbjct: 64  TLRKAGQALENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVFGAPDLKAGAAG 117

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHIT 153
             L             + + ++E E +  L A+  R+ ++     
Sbjct: 118 TVLNLFESQASYHYADVENGLLEQECRDQLQAFFKRRRKEIKEKR 162


>gi|302672151|ref|YP_003832111.1| CMP/dCMP deaminase zinc-binding domain-containing protein
           [Butyrivibrio proteoclasticus B316]
 gi|302396624|gb|ADL35529.1| CMP/dCMP deaminase zinc-binding domain-containing protein
           [Butyrivibrio proteoclasticus B316]
          Length = 190

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 22/151 (14%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALE 61
            D +FM AA+  +R           + C+IV +G +IGRG            HAE+ A++
Sbjct: 26  QDIKFMKAAITQARKA--YVLGEVPIGCVIVYEGKIIGRGYNRRNTDKTTLAHAEITAIK 83

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            AG+        G   YVTLEPC        CA  I++  I  V++  ++P    +G  L
Sbjct: 84  RAGKVIGDWRLEGCKLYVTLEPCQM------CAGAIVQARIPEVIMAAENPKAGCAGSVL 137

Query: 117 QWLSQKGI-----IVDRMMESEGKIFLHAYL 142
             L+  G      +   +++ E    L  + 
Sbjct: 138 DILNNPGFNHQVQVKRGVLKDECAKMLKEFF 168


>gi|284033054|ref|YP_003382985.1| bifunctional deaminase-reductase domain-containing protein
           [Kribbella flavida DSM 17836]
 gi|283812347|gb|ADB34186.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
           DSM 17836]
          Length = 242

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 87/221 (39%), Gaps = 16/221 (7%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD--DP-E 206
            H+      S D  + +    S  ++G   +     LR  SD +LVG GTV  +   P  
Sbjct: 24  PHLRCNFVTSIDGAMEVE-GKSKALSGAADQEIFGKLRMLSDVVLVGAGTVRIEGYRPLR 82

Query: 207 LTC------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
           L+       R  GL E +P   I+     L   S  +  A + P I+ T    P+ A   
Sbjct: 83  LSAARREWRRAQGLPE-NPTLAIVSSRLDLDPASPFLAEAPVRP-IVFTHTASPLDAREA 140

Query: 261 RKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
             +  +++ C     DL+ ++  LV RG+  +L EGG  +  +   + LVD + L  + +
Sbjct: 141 LAEVADVVVCGRAGVDLRAVMKTLVERGLPQVLSEGGPHLLGALTAADLVDEMCLSLAPV 200

Query: 319 VIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD--VCLEYIGK 357
           + G G                 +R    G D  +   Y+ +
Sbjct: 201 LAGPGSGRITAGPTATAIRSFALRSLLAGDDGFLFFRYLRE 241


>gi|209966407|ref|YP_002299322.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase, putative
           [Rhodospirillum centenum SW]
 gi|209959873|gb|ACJ00510.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase, putative
           [Rhodospirillum centenum SW]
          Length = 226

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 10/173 (5%)

Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE- 216
           +S D  I  AG   + ++G     +V   RA +DA+LVG GT+  DDP LT R+  L++ 
Sbjct: 10  MSLDGCIDRAGGERLVLSGAEDLREVQAARAAADAVLVGAGTLRRDDPRLTVRVPELRQG 69

Query: 217 -------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
                    P R+ L     +  D+           ++      P L          ++ 
Sbjct: 70  RLDRGLPADPARVALTRSGTIDPDAAFFAGDGR-RFVLCPTAVAPGLRRRL-GAVATVLP 127

Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
            +  D   ++  L G G+  LLVEGG  V   F+ S     + L  +   +G+
Sbjct: 128 LERTDAPSIVAALEGVGIDRLLVEGGTQVLTLFLASGCFHRLRLAVAPFFVGQ 180


>gi|119946930|ref|YP_944610.1| CMP/dCMP deaminase, zinc-binding [Psychromonas ingrahamii 37]
 gi|119865534|gb|ABM05011.1| CMP/dCMP deaminase, zinc-binding [Psychromonas ingrahamii 37]
          Length = 176

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 22/167 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
           D ++M+ AL  +      +     V  +IVKD  ++  G       +  C HAE+ A++ 
Sbjct: 14  DQKWMAYALSLADKAE--SFGEIPVGAVIVKDNKIVAEGWNLSIINHNACAHAEIMAIQS 71

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AG++ +       T YVTLEPC+       CA  ++   I+R+V    D     +G    
Sbjct: 72  AGQKIQNYRLIDCTLYVTLEPCAM------CAGALVHARIKRLVYGAGDYKTGAAGSVFN 125

Query: 118 W-----LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
                 L+ +  +   +   E    + A+  R+  ++  +  ++  S
Sbjct: 126 LVQSEQLNHQLEVTAGVFAEESATKISAFFKRRRLEKKQLKKQLIDS 172


>gi|212710654|ref|ZP_03318782.1| hypothetical protein PROVALCAL_01720 [Providencia alcalifaciens DSM
           30120]
 gi|212686735|gb|EEB46263.1| hypothetical protein PROVALCAL_01720 [Providencia alcalifaciens DSM
           30120]
          Length = 170

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 60/156 (38%), Gaps = 22/156 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
           M  S  D  +M  AL  ++         P V  L+VKD  ++  G       +    HAE
Sbjct: 1   MTQSEIDEYWMLQALELAKKAQ-NAGEIP-VGALLVKDNQLVATGWNHSIENHDPTAHAE 58

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +  L++AG   +       T YVTLEPC        CA  +I   I RVV    D     
Sbjct: 59  IVTLKQAGTALQNYRLLDTTLYVTLEPCIM------CAGAMIHSRIGRVVYGAKDFKTGA 112

Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
            G  +  +SQ G+     +   ++E      L  + 
Sbjct: 113 CGSFINIMSQPGLNHYVEVTSGVLEDACSSMLSEFF 148


>gi|159026320|emb|CAO88897.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 226

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             R H ++ +A+S D  I  A   +        K ++    +  DA L G  T+ A    
Sbjct: 1   MSRPHTSVILAMSADGKIADAYQSAARFASATDKIRLEQHLSSMDATLFGANTLRAYHTS 60

Query: 207 LTCRLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           L  R      H         P++I+     +L    K  +      +I   E        
Sbjct: 61  LPIRHPDFLAHRQQRGLSSQPIQIVCSYSGQLDPQMKFFQQPFPRWLITAAE-----KVA 115

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
            +  + +  +   C D K + +     G+  L + GG  +  S +   L+D I L    +
Sbjct: 116 VWENRGLFELVLVCGDWKAIFSQFTALGIKKLAILGGGELIASLLAEDLIDEIYLTICPL 175

Query: 319 VIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLEY 354
           ++G     +PL          +    +  +   +++ L Y
Sbjct: 176 LLGGNKAATPLGGTGFMADSARKLRLLSVETVEAEIFLHY 215


>gi|325662866|ref|ZP_08151435.1| hypothetical protein HMPREF0490_02175 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470918|gb|EGC74147.1| hypothetical protein HMPREF0490_02175 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 163

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
           + D ++M  A+R ++    L      + C+IV    +I RG            HAE+ A+
Sbjct: 2   NQDEKYMKEAIRQAKKAYAL--KEVPIGCVIVYQDKIIARGYNRRTIDKNTLAHAELIAI 59

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A  +         T YVTLEPC        C+  I++  +++VVV   +P    +G  
Sbjct: 60  RKASRKMDDWRLEDCTMYVTLEPCQM------CSGAIVQSRMKKVVVGCMNPKAGCAGSI 113

Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
              L       +  +   ++E E    + ++ 
Sbjct: 114 FNLLQVPQFNHQVELEIGVLEEECSQLMKSFF 145


>gi|325183042|emb|CCA17497.1| riboflavinspecific deaminase/GTP cyclohydrolase II putative [Albugo
           laibachii Nc14]
          Length = 219

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/212 (23%), Positives = 80/212 (37%), Gaps = 31/212 (14%)

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
            +       I     +  E    +  +   +  K   ITL  A S D  I         +
Sbjct: 1   MMTLHRTAEIDR---IWQECDDAMMRWTKDKSAKYPMITLTYAQSIDGCIAAKKGSPTIL 57

Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           +G  SK   H+LR     IL+GIGT+++D+P LT +             L     ++L S
Sbjct: 58  SGSASKRMTHVLRTLHQGILIGIGTLISDNPSLTSQD------------LVSTSIVALQS 105

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           +         VII  E+           +    ++     L +   +L   G  S++VEG
Sbjct: 106 RKKALEQAGAVIIECES-------ICTSEGAQHVH-----LSRAFELLHNYGFESIMVEG 153

Query: 295 GAAVAHSFINSR----LVDSIILYRSQIVIGE 322
           GA +  S +  +    LV  +I+  + I IG 
Sbjct: 154 GAGIITSCLREQTIFSLVSLVIITIAPIFIGG 185


>gi|163814785|ref|ZP_02206174.1| hypothetical protein COPEUT_00936 [Coprococcus eutactus ATCC 27759]
 gi|158450420|gb|EDP27415.1| hypothetical protein COPEUT_00936 [Coprococcus eutactus ATCC 27759]
          Length = 181

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
            ++M  AL  +R      + +  + C+IV +G +I RG            HAE+ A+E+A
Sbjct: 30  EKYMDKALAQARRA--YANGDVPIGCVIVHEGKIIARGFNKRNLKKTTLAHAEILAIEQA 87

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            ++         T YVTLEPC        CA  I++  I +VV+   +P    +G  +  
Sbjct: 88  SKKLGDWRLEECTMYVTLEPCQM------CAGAIVQARIPKVVIGCMNPKAGCAGSIINL 141

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYL 142
           L       +  ++  + E E    +  + 
Sbjct: 142 LQMQQFNHQVDVIRGVREQECSGMMKEFF 170


>gi|331086590|ref|ZP_08335668.1| hypothetical protein HMPREF0987_01971 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410423|gb|EGG89855.1| hypothetical protein HMPREF0987_01971 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 163

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
           + D ++M  A+R ++    L      + C+IV    +I RG            HAE+ A+
Sbjct: 2   NQDEKYMKEAIRQAKKAYAL--KEVPIGCVIVYQDKIIARGYNRRTIDKNTLAHAELIAI 59

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           ++A  +         T YVTLEPC        C+  I++  +++VVV   +P    +G  
Sbjct: 60  KKASRKMDDWRLEDCTMYVTLEPCQM------CSGAIVQSRMKKVVVGCMNPKAGCAGSI 113

Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
              L       +  +   ++E E    + ++ 
Sbjct: 114 FNLLQVPQFNHQVELEIGVLEEECSQLMKSFF 145


>gi|291526516|emb|CBK92103.1| Cytosine/adenosine deaminases [Eubacterium rectale DSM 17629]
 gi|291527005|emb|CBK92591.1| Cytosine/adenosine deaminases [Eubacterium rectale M104/1]
          Length = 157

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 17/125 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
           + D ++M  A++ ++    L      + C+IV    +I RG     T      HAE+ A+
Sbjct: 2   TQDEKYMKQAIKQAKKAYALDEV--PIGCVIVAGDKIIARGYNRRNTDKNPLAHAELSAI 59

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A ++         T YVTLEPC        CA  I++  I RVV+   +P    +G  
Sbjct: 60  RKASKKTGDWRLEECTMYVTLEPC------QMCAGAIVQARIPRVVIGAMNPKAGCAGSI 113

Query: 116 LQWLS 120
           +  L 
Sbjct: 114 INLLQ 118


>gi|261417404|ref|YP_003251087.1| CMP/dCMP deaminase zinc-binding protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373860|gb|ACX76605.1| CMP/dCMP deaminase zinc-binding protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 210

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 63/158 (39%), Gaps = 22/158 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEV 57
             SS D +FM  ALR ++  +        + C+IVKDG+VIG+G            HAE+
Sbjct: 47  NFSSEDEKFMRMALRQAQ--IAFDMKEIPIGCVIVKDGVVIGKGYNQVEQLKDATAHAEI 104

Query: 58  QALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+  A          G T YVTLEPC      P CA  I+   + R+V    D      
Sbjct: 105 IAIGTAASTLDNWRLDGCTLYVTLEPC------PMCAGAILNSRVSRIVYGSPDSRFGGC 158

Query: 113 GRGL-----QWLSQKGIIVDRMMESEGKIFLHAYLTRQ 145
           G  +       L +   +   ++  E    L  +  + 
Sbjct: 159 GTTIDVITGNALKRAVEVTGGILADECLGLLKGFFQQM 196


>gi|169836056|ref|ZP_02869244.1| riboflavin biosynthesis protein RibD [candidate division TM7
          single-cell isolate TM7a]
          Length = 66

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/66 (56%), Positives = 47/66 (71%), Gaps = 3/66 (4%)

Query: 30 SVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG---ATAYVTLEPCSHYGRSP 86
           V  ++V+DG VIG G   Y G PHAEV ALEEA + ++    AT YVTLEPCSHYG++P
Sbjct: 1  MVGAVVVQDGKVIGTGYHKYFGGPHAEVYALEEAAQNSKDLSNATIYVTLEPCSHYGKTP 60

Query: 87 PCAQFI 92
          PCA+ +
Sbjct: 61 PCAEKL 66


>gi|149190045|ref|ZP_01868322.1| cytosine/adenosine deaminase [Vibrio shilonii AK1]
 gi|148836075|gb|EDL53035.1| cytosine/adenosine deaminase [Vibrio shilonii AK1]
          Length = 178

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 61/156 (39%), Gaps = 22/156 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
            +  D RFM  A+  +      +     V  ++V+ G +I  G     G      HAE+Q
Sbjct: 10  FNDEDRRFMQRAMELANHAE--SEGEVPVGAVLVRGGKIIAEGWNQSIGNHDATAHAEMQ 67

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            + +AG+          T YVTLEPC      P CA  ++   ++RVV    D     +G
Sbjct: 68  VIRKAGQNLENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVFGAPDLKAGAAG 121

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144
             L             +   ++E E +  L A+  R
Sbjct: 122 TVLNLFESQASYHYADVESGLLEEECRHQLQAFFKR 157


>gi|217031852|ref|ZP_03437355.1| hypothetical protein HPB128_199g60 [Helicobacter pylori B128]
 gi|216946504|gb|EEC25106.1| hypothetical protein HPB128_199g60 [Helicobacter pylori B128]
          Length = 276

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 60/278 (21%), Positives = 108/278 (38%), Gaps = 47/278 (16%)

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG-RGLQWLSQKGIIV 126
           +     +TLEPC+ YG++P C++ +     +RVV+  ++ + +  G   LQ    + II 
Sbjct: 27  KDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIAAEENEAKKGGLARLQKARIETIIC 86

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
             +      + L   +  Q  + +   L + ++ D   G        ITG  S    H  
Sbjct: 87  HNLENKAKDLLLPFRIMEQKGRFNLFKLALRMNGDYHHG-------KITGQKSVIFTHNQ 139

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
           RA  + +++   T+  D+P L  R      Q  +P   IL     +  +SK+      AP
Sbjct: 140 RAICNTLIISGKTIRTDNPLLDARFCDHFYQNKNPNIAILSKR-SIDPNSKVFS----AP 194

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
             +V    DP                  +DL       + +G     +EGG  +  S  N
Sbjct: 195 NRLVNTFHDP------------------KDLP------LEKGFN--FIEGGWELFESLRN 228

Query: 305 SRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNF 338
              +D+++L+    +IGE      + +P +   L    
Sbjct: 229 K--IDALLLHSHASMIGEAFSVLALKTPFKGRLLHAQI 264


>gi|251794142|ref|YP_003008873.1| CMP/dCMP deaminase zinc-binding [Paenibacillus sp. JDR-2]
 gi|247541768|gb|ACS98786.1| CMP/dCMP deaminase zinc-binding [Paenibacillus sp. JDR-2]
          Length = 156

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 17/130 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M     D  +M  A+  ++    +      +  ++VK+G V+GRG     T +    HAE
Sbjct: 1   MIREQEDQAWMQLAIEEAKKAEQI--GEVPIGAILVKNGEVVGRGYNLRETNHDPTAHAE 58

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ EA E          T YVTLEPC      P CA  I++  ++RVV    DP    
Sbjct: 59  MVAIREACERLGAWRLLDCTLYVTLEPC------PMCAGAIVQSRVKRVVYGTGDPKAGC 112

Query: 112 SGRGLQWLSQ 121
           +G  +  L +
Sbjct: 113 AGTLMNLLQE 122


>gi|319427113|gb|ADV55187.1| CMP/dCMP deaminase zinc-binding protein [Shewanella putrefaciens
           200]
          Length = 169

 Score =   99 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 58/158 (36%), Gaps = 22/158 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56
           M  +  D  +M  A++ +       +    V  ++VKDG  I  G       +    HAE
Sbjct: 1   MEQTELDEYWMQVAMQMAEKAE--AAGEVPVGAVLVKDGQQIATGYNLSISQHDPSAHAE 58

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +  L  AG++        AT Y+TLEPC+       CA  ++   I RVV    D     
Sbjct: 59  ILCLRSAGKKLENYRLLDATLYITLEPCAM------CAGAMVHSRIARVVYGARDEKTGA 112

Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTR 144
           +G  +  L          +   ++       L  +  R
Sbjct: 113 AGTVVNLLQHPAFNHQVEVTSGVLAEACSAQLSRFFKR 150


>gi|158316923|ref|YP_001509431.1| hypothetical protein Franean1_5167 [Frankia sp. EAN1pec]
 gi|158112328|gb|ABW14525.1| bifunctional deaminase-reductase domain protein [Frankia sp.
           EAN1pec]
          Length = 270

 Score =   99 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 79/199 (39%), Gaps = 21/199 (10%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD--PEL 207
            H+      S D  I +    S  + G         LR  SD +LVG GT   +D  P L
Sbjct: 56  PHVRSNFVTSADGAIEI-NGRSADLGGPADLRVFRTLRWLSDVVLVGAGTARTEDYGPVL 114

Query: 208 -------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
                       GL    P+ ++     +L  D+++  TA + P+++  E   P+   A 
Sbjct: 115 VPAERRERRAAAGLTPVPPVAVV-SGRLELDPDARLF-TAAVRPLLLTCEAAPPLRRRAL 172

Query: 261 RK-KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
                I +   +  + +  L  L  RG+  +L EGG  +   F  + L+D + L  + ++
Sbjct: 173 EPVAEIVVCGDETVEPRAALDALAERGLLRVLTEGGPRLHAQFAQAGLLDELCLTLAPVL 232

Query: 320 IGEGGI--------PSPLE 330
            G G +        P+P+ 
Sbjct: 233 AGPGRLGLMQGPVWPAPVG 251


>gi|296164645|ref|ZP_06847211.1| riboflavin biosynthesis protein RibD [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295899953|gb|EFG79393.1| riboflavin biosynthesis protein RibD [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 227

 Score =   99 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 63/149 (42%), Gaps = 7/149 (4%)

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADD--PELTCRLNGLQEHSPMRIILDPHFKL 230
           P++    +  + +LR  +D +LVG GT  A++  P    RL       P   ++    +L
Sbjct: 45  PLSCPTDQQLLKILRGFADVVLVGAGTARAENYGP---VRLPDAGPTPPPIAVISRSGRL 101

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
              S+++      P+++              ++ + +   D  D+ + + +L  RG+  +
Sbjct: 102 P--SRLLSEPGRPPIVVTCAGAAAARDQPGDRRQVLVAGEDSVDVSRAVALLRARGMHRI 159

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIV 319
           L EGG  V    + +  VD I +  +  +
Sbjct: 160 LCEGGPTVLDELVEADAVDEICVTLAPNL 188


>gi|331092011|ref|ZP_08340842.1| hypothetical protein HMPREF9477_01485 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402212|gb|EGG81783.1| hypothetical protein HMPREF9477_01485 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 155

 Score =   99 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 66/152 (43%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
           + D ++M  A++ ++    +      + C+IV +  +I RG     T      HAE+ A+
Sbjct: 2   NQDEKYMREAIKQAKKAYEINEV--PIGCVIVCEDKIISRGYNRRTTDKNPLAHAEMIAI 59

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           ++A ++         T YVTLEPC        C+  I++  +++VVV   +     +G  
Sbjct: 60  KKASKKVGDWRLEDCTMYVTLEPCQM------CSGAIVQSRMKKVVVGCMNAKAGCAGSI 113

Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
           L  L       +  +   ++E E  + +  + 
Sbjct: 114 LNLLQMDEFNHQVELETGVLEEECSLLMKNFF 145


>gi|145224494|ref|YP_001135172.1| hypothetical protein Mflv_3913 [Mycobacterium gilvum PYR-GCK]
 gi|315444825|ref|YP_004077704.1| pyrimidine reductase, riboflavin biosynthesis [Mycobacterium sp.
           Spyr1]
 gi|145216980|gb|ABP46384.1| bifunctional deaminase-reductase domain protein [Mycobacterium
           gilvum PYR-GCK]
 gi|315263128|gb|ADT99869.1| pyrimidine reductase, riboflavin biosynthesis [Mycobacterium sp.
           Spyr1]
          Length = 257

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 73/196 (37%), Gaps = 19/196 (9%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGC-----GSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
                       V  + +  + G       S  + G   +     LR  +D I+VG  TV
Sbjct: 27  HYPYPDGLDSCWVRANMITSVDGGATSAGKSGGLGGDGDRALFSALRELADVIVVGAQTV 86

Query: 201 LADD---------PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251
            ++D           L  +  G  E  P+  +L    +L  D+K+     + P+I+ +  
Sbjct: 87  RSEDYSGVRLSASARLARQQRGQSEVPPIA-VLTRSGRLDRDAKLFTRTDVPPLILTSTR 145

Query: 252 DDPVLALAF----RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
                           + +    D  D  + LT+L  RG+  +L EGG  +   F +  L
Sbjct: 146 ALDDTRRLLGSVAEVLDASGAQPDSVDPAQALTLLAERGLRRVLTEGGPGILGMFTDDDL 205

Query: 308 VDSIILYRSQIVIGEG 323
           VD + +  + +++G G
Sbjct: 206 VDELCVTVAPLLLGGG 221


>gi|260437836|ref|ZP_05791652.1| tRNA-specific adenosine deaminase [Butyrivibrio crossotus DSM 2876]
 gi|292809861|gb|EFF69066.1| tRNA-specific adenosine deaminase [Butyrivibrio crossotus DSM 2876]
          Length = 157

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEA 63
             FM  A+R ++    L      + C+IV DG +I RG            HAE+ A++ A
Sbjct: 5   EGFMKEAIRQAKKAEKLNEV--PIGCVIVYDGKIIARGYNRRNTDKSTLAHAEIIAIKRA 62

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            +          T YVTLEPC        CA  I++  I +VV+   +     +G  +  
Sbjct: 63  SKVIKDWRLEDCTLYVTLEPCQM------CAGAIVQARIPKVVIGTMNSKAGCAGSVINV 116

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYL 142
           L  K       I   ++  E K  +  + 
Sbjct: 117 LQMKEFNHQVDICKGVLADECKEMMQNFF 145


>gi|90407089|ref|ZP_01215278.1| hypothetical protein PCNPT3_02575 [Psychromonas sp. CNPT3]
 gi|90311811|gb|EAS39907.1| hypothetical protein PCNPT3_02575 [Psychromonas sp. CNPT3]
          Length = 182

 Score = 99.6 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/124 (31%), Positives = 54/124 (43%), Gaps = 17/124 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
           D ++M  AL  +     L      V  ++VKD  VI  G      ++  C HAEV A+ E
Sbjct: 22  DEKWMQYALLLADKAEAL--GEVPVGAVLVKDNEVIAEGWNLSILSHDACAHAEVMAVRE 79

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AG + +       T YVTLEPC      P CA  ++   I+R+V    D     +G    
Sbjct: 80  AGHKLQNYRLIDCTLYVTLEPC------PMCAGALVHARIKRLVYGAPDLKTGAAGSVFN 133

Query: 118 WLSQ 121
            LS 
Sbjct: 134 LLSH 137


>gi|19075322|ref|NP_587822.1| CMP/dCMP deaminase family [Schizosaccharomyces pombe 972h-]
 gi|74627116|sp|P87241|RIB2_SCHPO RecName: Full=Diaminohydroxyphosphoribosylamino-pyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase
 gi|2213559|emb|CAB09771.1| CMP/dCMP deaminase family [Schizosaccharomyces pombe]
          Length = 405

 Score = 99.6 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 8/125 (6%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQA-----LE 61
             +M  AL  ++     T +   V  +IV++G ++  G +    G  HAE  A     L+
Sbjct: 259 EEYMLKALNEAKKCEP-TDSAFCVGAVIVQNGKIVSTGYSRERPGNTHAEECAIEKFMLK 317

Query: 62  EAGEEARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              +   GA  Y T+EPCS    +   C   I++     VV+   +PD+ V   G+  L 
Sbjct: 318 NPTDSLEGAIMYSTMEPCSKRLSKKVSCTDLIVKQKFSTVVLGSLEPDIFVKCEGVDLLK 377

Query: 121 QKGII 125
           + GI+
Sbjct: 378 KAGIV 382


>gi|171463305|ref|YP_001797418.1| CMP/dCMP deaminase zinc-binding [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171192843|gb|ACB43804.1| CMP/dCMP deaminase zinc-binding [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 152

 Score = 99.6 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 64/158 (40%), Gaps = 22/158 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
           M  ++ D ++M  A+  ++      +    V  ++VKDG VI +             HAE
Sbjct: 1   MTQAALDQQYMRMAIEQAQLAAQ--AGEVPVGAVLVKDGQVIAKAFNKPIANHDPSAHAE 58

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL EA          G+T YVTLEPC+       C+  ++   I RVV    DP    
Sbjct: 59  MLALREAALAQENYRIPGSTLYVTLEPCAM------CSGAMLHARIDRVVFGAPDPKTGA 112

Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTR 144
           +G  L   + K I     +   +M  E    L  +  R
Sbjct: 113 AGSVLDLFASKQINHQTSVEGGIMSEECGQLLRDFFKR 150


>gi|268593242|ref|ZP_06127463.1| tRNA-specific adenosine deaminase [Providencia rettgeri DSM 1131]
 gi|291311137|gb|EFE51590.1| tRNA-specific adenosine deaminase [Providencia rettgeri DSM 1131]
          Length = 160

 Score = 99.6 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 61/156 (39%), Gaps = 22/156 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
           M     D  +M  A+  +     L      V  ++VKD  ++  G       +    HAE
Sbjct: 1   MTQIEIDEYWMQQAIELALKAQDL--GEIPVGAVLVKDNHLVASGWNRSIIDHNPTAHAE 58

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL++AG+E         T YVTLEPC        CA  +I   I RVV    D     
Sbjct: 59  IMALQQAGQELSNYRLLDTTLYVTLEPCIM------CAGAMIHSRISRVVYGAKDFKTGA 112

Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
            G  L  + Q G+     +   ++E +    L A+ 
Sbjct: 113 CGSYLDIMGQAGLNHYVDVTGGVLEQQCSSMLSAFF 148


>gi|320169275|gb|EFW46174.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 1344

 Score = 99.6 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 47/132 (35%), Positives = 70/132 (53%), Gaps = 4/132 (3%)

Query: 5    SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEEA 63
            S D R+M+ A++ +   V    T   V C+IV++G+V+  G +    G  HAE  AL++ 
Sbjct: 1190 SNDWRYMAMAIQQANQSVP-VETAYCVGCVIVQNGVVLSSGFSRELPGNTHAEECALKKL 1248

Query: 64   -GEEARGATAYVTLEPC-SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
              E+A+GAT Y T+EPC +    +  C   II   I RVV+ V +P   V   G+  L +
Sbjct: 1249 TPEQAQGATVYTTMEPCTTRLSGNVCCTDHIINNRIARVVIGVREPAEFVVCIGIDRLEK 1308

Query: 122  KGIIVDRMMESE 133
             GI V R+   E
Sbjct: 1309 AGIQVTRLSGLE 1320


>gi|269962366|ref|ZP_06176716.1| zinc-binding domain protein [Vibrio harveyi 1DA3]
 gi|269832862|gb|EEZ86971.1| zinc-binding domain protein [Vibrio harveyi 1DA3]
          Length = 164

 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEE 66
           M  A+  +            V  ++VKDG ++  G      A+    HAE+Q L +AGE 
Sbjct: 1   MRRAMELAEQAE--AEGEVPVGAVLVKDGEIVAEGWNRSICAHDATAHAEIQTLRKAGEA 58

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS- 120
                    T YVTLEPC      P CA  ++   ++RVV    D     +G  L     
Sbjct: 59  LENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVYGAPDLKAGAAGTVLNLFKS 112

Query: 121 ----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
                   +   ++E E +  L A+  R+ ++          + D 
Sbjct: 113 QAAYHYATVESGLLEDECRSQLQAFFKRRRKEIKAKKQAQRANDDE 158


>gi|269965211|ref|ZP_06179345.1| zinc-binding domain protein [Vibrio alginolyticus 40B]
 gi|269830197|gb|EEZ84424.1| zinc-binding domain protein [Vibrio alginolyticus 40B]
          Length = 169

 Score = 99.2 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 22/148 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEE 66
           M  A+  +            V  ++VKDG +I  G     G      HAE+Q L +AG++
Sbjct: 1   MRRAMELAEQAE--AEGEVPVGAVLVKDGEIIAEGWNRSIGTNDATAHAEIQTLRKAGQK 58

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS- 120
                    T YVTLEPC      P CA  ++   ++RVV    D     +G  L     
Sbjct: 59  LENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVFGAPDLKAGAAGTVLNLFES 112

Query: 121 ----QKGIIVDRMMESEGKIFLHAYLTR 144
                  ++   ++E E +  L A+  R
Sbjct: 113 QAAYHYALVEKGLLEDECRTQLQAFFKR 140


>gi|186681708|ref|YP_001864904.1| deaminase-reductase domain-containing protein [Nostoc punctiforme
           PCC 73102]
 gi|186464160|gb|ACC79961.1| bifunctional deaminase-reductase domain protein [Nostoc punctiforme
           PCC 73102]
          Length = 247

 Score = 99.2 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 79/241 (32%), Gaps = 30/241 (12%)

Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA-- 202
            ++ R H T+ +A+S D  I             + K  +    A SDA+L G GT+ A  
Sbjct: 1   MLQHRPHTTVVLAMSADGKIADFRRSPARFGSRVDKAHLEKQIAASDAVLFGAGTLRAYG 60

Query: 203 -----DDPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT------- 249
                 DP L   R    +   P+ I+      L+ +    K  +   ++          
Sbjct: 61  TTLTVSDPTLVRLRAQEGKPPQPVHIVTTHSGNLNPEINFFKQPVRRWLLTTALGKLSWK 120

Query: 250 -----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
                                F +  +        D+   L  L    +T L+V GG  +
Sbjct: 121 GRCLQTLPSTLGTGTQECPPEFEQILVFETPTREIDIPAALKHLANIDITRLVVLGGGEL 180

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE----GYLEKNFMCVRRDYFGSDVCLEY 354
             S +   L+D + L    +++G    P+P+E       L      +       +V L Y
Sbjct: 181 VASLLGLDLIDELWLTVCPLILGGSTAPTPVEGKGFLPDLAPKLQLLEVHTVEQEVFLHY 240

Query: 355 I 355
            
Sbjct: 241 R 241


>gi|67921574|ref|ZP_00515092.1| bifunctional deaminase-reductase, C-terminal [Crocosphaera watsonii
           WH 8501]
 gi|67856686|gb|EAM51927.1| bifunctional deaminase-reductase, C-terminal [Crocosphaera watsonii
           WH 8501]
          Length = 224

 Score = 99.2 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 82/221 (37%), Gaps = 12/221 (5%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           +E R   T+ +A + D  I      +      I KN +    +  D ++ G GT+ A   
Sbjct: 1   MENRPKTTVILATTADGKIADFQRNAARFGSDIDKNHLEKQISLVDGVIFGAGTLRAYGT 60

Query: 206 ELTCRLNGL--------QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
            LT R   L        +   P+ I++    K++ + +     +   +I   E      +
Sbjct: 61  TLTVRNTELLAQRKQENKPSQPINIVVSASGKIADNLRFFSQPVPHWLITTEEGTKNDTS 120

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
              +    +       +L      L   G+ +L + GG  +  S +   L+D   L    
Sbjct: 121 NFEKVLTFSPEETGKINLVAAFKHLKEIGLNNLAILGGGELVASCLEENLIDEFCLTLCP 180

Query: 318 IVIGEGGIPSPLEE-GYLEKN---FMCVRRDYFGSDVCLEY 354
            ++G    P+P+E  G+L K+      +  +    ++ L Y
Sbjct: 181 YILGGKTAPTPVEGKGFLSKHSQKLELLSLEQIEQEIFLHY 221


>gi|304405747|ref|ZP_07387405.1| CMP/dCMP deaminase zinc-binding [Paenibacillus curdlanolyticus YK9]
 gi|304344990|gb|EFM10826.1| CMP/dCMP deaminase zinc-binding [Paenibacillus curdlanolyticus YK9]
          Length = 148

 Score = 99.2 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 21/153 (13%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEE 66
           M+ A+  +R    +      +  +IV++G VIGRG     T +    HAE+ A+ EA + 
Sbjct: 1   MAEAIEEARKAEAI--GEVPIGAVIVRNGEVIGRGYNLRETDHDATAHAEIIAIREASKH 58

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                   +T YVTLEPC      P CA  I++  ++RVV    DP    +G  +  L +
Sbjct: 59  IEAWRLLDSTLYVTLEPC------PMCAGAIVQSRVKRVVYGTHDPKAGCAGTLMNLLQE 112

Query: 122 ----KGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
                   +   +  E    L     R++ ++ 
Sbjct: 113 PRFNHETELTSGVMQEECASLLTTFFRRLRRKP 145


>gi|160894462|ref|ZP_02075238.1| hypothetical protein CLOL250_02014 [Clostridium sp. L2-50]
 gi|156863773|gb|EDO57204.1| hypothetical protein CLOL250_02014 [Clostridium sp. L2-50]
          Length = 214

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 26/158 (16%)

Query: 3   VSSFDAR----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPH 54
           +S  D +    +M  A++ ++        +  + C+IVKD  VI RG            H
Sbjct: 51  MSGEDRKMYEIYMKKAIKLAQKA--YVQGDVPIGCVIVKDNKVIARGYNKRNLKKTTLAH 108

Query: 55  AEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AE+ A+E+A ++         T YVTLEPC        CA  I++  I +VV+   +   
Sbjct: 109 AELLAIEQASKKLGDWRLEDCTMYVTLEPCQM------CAGAIVQARIPKVVIGCMNKKA 162

Query: 110 RVSGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
             +G  L        + +   V  + + E    +  + 
Sbjct: 163 GCAGSILNMFDMSAFNHQVETVYGICQEECSSLMKDFF 200


>gi|323492402|ref|ZP_08097552.1| tRNA-specific adenosine-34 deaminase [Vibrio brasiliensis LMG
           20546]
 gi|323313363|gb|EGA66477.1| tRNA-specific adenosine-34 deaminase [Vibrio brasiliensis LMG
           20546]
          Length = 181

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 61/154 (39%), Gaps = 22/154 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
            +  D  FM  A+  ++           V  ++VKDG +I  G     G      HAE+Q
Sbjct: 6   FTPQDELFMRRAMELAQHAE--EQGEVPVGAVLVKDGEIIAEGWNESIGSHDATAHAEMQ 63

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            + +AG           T YVTLEPC      P CA  ++   ++R+V    D     +G
Sbjct: 64  TIRKAGLALENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVFGAPDLKAGAAG 117

Query: 114 RGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
             L     +       +   ++E E ++ L ++ 
Sbjct: 118 TVLNLFEHQAAYHYADVEQGLLEDECRVQLQSFF 151


>gi|325068553|ref|ZP_08127226.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
           /5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Actinomyces oris K20]
          Length = 111

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 52/109 (47%), Gaps = 4/109 (3%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQAL 60
             ++     M  ALR +         NP V C+I+  DG V+  G     G  HAEV AL
Sbjct: 3   SFTTVQTAAMQRALRAAASPDAPPGPNPRVGCVILSPDGDVLAEGHHRGAGTAHAEVDAL 62

Query: 61  EEAGEEA---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
                     RG TA VTLEPC+H  R+ PC Q +++ G+  V+   DD
Sbjct: 63  ANLAAAGASARGTTAVVTLEPCNHQSRTGPCVQALLDAGVAEVIYAQDD 111


>gi|205371946|ref|ZP_03224765.1| hypothetical protein Bcoam_00240 [Bacillus coahuilensis m4-4]
          Length = 160

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
             FM  A+  +     +      +  +IVKDG VI  G     T      HAEV A+++A
Sbjct: 4   EHFMKLAIEEALKAKEILEV--PIGAVIVKDGEVIATGHNLRETTQNAITHAEVIAIQKA 61

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            E+       GA  YVTLEPC      P C+  I++  I +V+    DP    +G  +  
Sbjct: 62  CEKLGTWRLEGAELYVTLEPC------PMCSGAIVQSRIEKVIYGAKDPKAGCAGSLMNL 115

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYL 142
           L       +  +   ++E E    L ++ 
Sbjct: 116 LQDSRFNHQCEVEHGILEVECGELLSSFF 144


>gi|295094398|emb|CBK83489.1| Cytosine/adenosine deaminases [Coprococcus sp. ART55/1]
          Length = 169

 Score = 98.4 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 67/166 (40%), Gaps = 32/166 (19%)

Query: 1   MPVSSFDA----------RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG 50
           M  ++ D           ++M  A+  ++      + +  + C+IV D  +I RG     
Sbjct: 1   MEDTNIDELTPEERRIHEKYMDKAIAQAKRA--YANGDVPIGCVIVHDDRIIARGFNKRN 58

Query: 51  ----GCPHAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                  HAE+ A+E+A ++         T YVTLEPC        CA  I++  I  VV
Sbjct: 59  LKKTTLAHAEILAIEQASKKLGDWRLEECTMYVTLEPCQM------CAGAIVQARIPNVV 112

Query: 102 VCVDDPDVRVSGRGLQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +   +P    +G  +  L     + +  ++  + + E    + ++ 
Sbjct: 113 IGCMNPKAGCAGSIINLLDMKQFNHQVEVIRGVRQDECSEMMKSFF 158


>gi|117617810|ref|YP_857319.1| tRNA-specific adenosine deaminase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559217|gb|ABK36165.1| tRNA-specific adenosine deaminase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 179

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 65/172 (37%), Gaps = 22/172 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57
                D R+M  A+  +    G+      V  ++V  G V+G G       +  C HAEV
Sbjct: 11  SQREQDERWMRHAMALAARAEGI--GEIPVGAVLVLGGEVVGEGWNRSISEHDACAHAEV 68

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+  AG   +       T YVTLEPC        CA  +I   ++RVV    D     +
Sbjct: 69  MAIRAAGVRLQNYRLLDTTLYVTLEPCCM------CAGALIHSRVKRVVYGARDLKTGAA 122

Query: 113 GRGLQWLSQ----KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
           G   + L       G+ +   ++       L  +  R+  ++    L +  S
Sbjct: 123 GSVFEILQDPRHNHGVELTGGVLADACSAQLSDFFRRRRAEKKAARLALQQS 174


>gi|289628393|ref|ZP_06461347.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
          aesculi str. NCPPB3681]
          Length = 60

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 32/56 (57%)

Query: 3  VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
           ++ D  +M+ AL  +R  +  T  NP V C+IV+DG ++G G     G PHAEV 
Sbjct: 5  QAALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVH 60


>gi|166367634|ref|YP_001659907.1| bifunctional deaminase-reductase-like [Microcystis aeruginosa
           NIES-843]
 gi|166090007|dbj|BAG04715.1| bifunctional deaminase-reductase-like [Microcystis aeruginosa
           NIES-843]
          Length = 226

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             R H T+ +A+S D  I  A   +        K ++    ++ DA L G  T+ A    
Sbjct: 1   MNRPHTTVILAMSADGKIADAYQSAARFASATDKMRLEQHLSRMDAALFGANTLRAYHTS 60

Query: 207 LTCRLNG----LQEH----SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           L  R        Q+      P++I+     +L    K  +      +I   E        
Sbjct: 61  LPIRHADFLAYRQQRGLSPQPIQIVCSHSGQLDPRMKFFQQPFPRWLITAAE-----KVA 115

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
           A+  + +  +   C D K + +     G+  L + GG  +  S +   L+D I L    +
Sbjct: 116 AWENRGLFELVLVCGDWKAIFSQFTTLGIKKLAILGGGELIASLLAEDLIDEIHLTICPL 175

Query: 319 VIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLEY 354
           ++G     +PL          +    +  +   +++ L Y
Sbjct: 176 LLGGNKAATPLGGTGFMADSARKLRLLSVETVEAEIFLHY 215


>gi|323705214|ref|ZP_08116790.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535640|gb|EGB25415.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 137

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 25/147 (17%)

Query: 11  MSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           M AA+  +    +           V  ++VKDGI+IGRG     T      HAE+ A+++
Sbjct: 1   MKAAIDEAIISFKLGEM------PVGAVVVKDGIIIGRGYNLKETEKDATQHAEINAIKD 54

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +        GA+ YVTLEPC      P CA  IIE  I+RV V  +  D   +G    
Sbjct: 55  ACKSIGDWRLNGASLYVTLEPC------PMCAGAIIESRIKRVYVGAESRDNGAAGTVYD 108

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTR 144
            L++K  +   +ME E K  ++ + +R
Sbjct: 109 LLNKKAEVYFGIMEDECKKLINDFFSR 135


>gi|209527439|ref|ZP_03275944.1| bifunctional deaminase-reductase domain protein [Arthrospira maxima
           CS-328]
 gi|209492112|gb|EDZ92462.1| bifunctional deaminase-reductase domain protein [Arthrospira maxima
           CS-328]
          Length = 234

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 78/229 (34%), Gaps = 18/229 (7%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA----- 202
            R + T+ +A+S D  I                  +    AQ+DA+L G GT+ A     
Sbjct: 8   TRPYTTVILAMSADGKIADPMRSPARFGSNADIIHLERQIAQADAVLFGNGTLAAYGTVL 67

Query: 203 ---DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
                  L  R    +   P +I+     K++   K  +  +  P  ++T          
Sbjct: 68  RVSSTELLGAREKNGKPPQPAQIVCSASGKINPTLKFFQQPV--PKWLLTTFLGGQPWKR 125

Query: 260 FRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
           F      +I  D  +      + L  L  RG+  L V GG  +  S +    +D   L  
Sbjct: 126 FSDHFDEVIVADDSNGVITWSEALQQLRDRGIQKLAVLGGGQLVASLMAYHAIDEFQLTV 185

Query: 316 SQIVIGEGGIPSPLEEGYLEKNF----MCVRRDYFGSDVCLEYIGKNLC 360
             +++G    P+P++       F      +       +V L Y  K+  
Sbjct: 186 CPLILGGTTSPTPVDGEGFLSRFAPHLQLLSVQQVDDEVFLHYRVKSAL 234


>gi|300214872|gb|ADJ79288.1| Cytosine/adenosine deaminase [Lactobacillus salivarius CECT 5713]
          Length = 166

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 66/170 (38%), Gaps = 23/170 (13%)

Query: 1   MPVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHA 55
           MP++     +FM  AL  ++    +      + C+IVKDG +IGRG      +     HA
Sbjct: 1   MPLTDEQKVKFMKEALFEAKLAAKI--GEVPIGCVIVKDGKIIGRGHNLREHSQNATLHA 58

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+EEA E            +VTLEPC      P C+  II   I  V     DP   
Sbjct: 59  EMLAIEEANETVNSWRLVDTQLFVTLEPC------PMCSGAIINSRIPEVYYGASDPKAG 112

Query: 111 VSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
             G  +  L       +  +   ++E+E    L  +     EK       
Sbjct: 113 TVGTLMNLLEDSRFNHQSFVEKGILENECASILKDFFKSIREKMKKKRKN 162


>gi|156973452|ref|YP_001444359.1| hypothetical protein VIBHAR_01142 [Vibrio harveyi ATCC BAA-1116]
 gi|156525046|gb|ABU70132.1| hypothetical protein VIBHAR_01142 [Vibrio harveyi ATCC BAA-1116]
          Length = 164

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 59/148 (39%), Gaps = 22/148 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE- 65
           M  A+  +            V  ++VKDG +I  G      A+    HAE+Q L +AGE 
Sbjct: 1   MRRAMELAEQAE--AEGEVPVGAVLVKDGEIIAEGWNRSICAHDATAHAEIQTLRKAGEA 58

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS- 120
                    T YVTLEPC      P CA  ++   ++RVV    D     +G  L     
Sbjct: 59  LGNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVYGAPDLKAGAAGTVLNLFES 112

Query: 121 ----QKGIIVDRMMESEGKIFLHAYLTR 144
                   + + ++E E +  L A+  R
Sbjct: 113 QAAYHYATVENGLLEEECRSQLQAFFKR 140


>gi|172037934|ref|YP_001804435.1| putative riboflavin-specific deaminase [Cyanothece sp. ATCC 51142]
 gi|171699388|gb|ACB52369.1| putative riboflavin-specific deaminase [Cyanothece sp. ATCC 51142]
          Length = 236

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 82/226 (36%), Gaps = 12/226 (5%)

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           Y   Q+E R    + +A++ D  I      +      I +N +    +  D +L+G  T+
Sbjct: 6   YREIQMENRPKTAVILAMTADGKIADFQRNAARFGSNIDQNHLEKQISLVDGVLLGARTL 65

Query: 201 LA--------DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252
            A        D   L  R    +   P+ I++    K++ + +     +   ++   E  
Sbjct: 66  RAFGTTVIVKDAELLANRKQNNKPSQPINIVVSASGKIADNLRFFSQPVPHWLMTTQEGT 125

Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
               +   +      I     +L + L  L   G++ L + GG  +  + +   L+D + 
Sbjct: 126 KEQTSKFEKVLTFPEIEAGKINLVEALKRLKELGLSHLAIIGGGELVANCLEQNLIDELW 185

Query: 313 LYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLEY 354
           L     ++G    P+P+E         +    +  +    ++ L Y
Sbjct: 186 LTVCPYLLGGKTAPTPVEGMGFLSSHAQKLELLSLEQKEQEIFLHY 231


>gi|158319077|ref|YP_001511584.1| CMP/dCMP deaminase zinc-binding [Alkaliphilus oremlandii OhILAs]
 gi|158139276|gb|ABW17588.1| CMP/dCMP deaminase zinc-binding [Alkaliphilus oremlandii OhILAs]
          Length = 154

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 22/151 (14%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
            +  FM  A+  ++           +  ++VKD  +IGRG     T      HAE+ A++
Sbjct: 3   LEENFMLEAIEEAKKA--FNKKEVPIGAVVVKDNEIIGRGHNLRETTKNSISHAEIMAIQ 60

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           EA     G      T YVT+EPC      P CA  I++  I++VV+   DP     G  +
Sbjct: 61  EACKFLGGWRLTDCTLYVTIEPC------PMCAGAILQSRIQKVVIGAMDPKAGACGSLV 114

Query: 117 QWLSQKGI-----IVDRMMESEGKIFLHAYL 142
             L+         I   ++E E  + +  + 
Sbjct: 115 NLLNDSRFNHQTEIEQGVLEEECSLLMKEFF 145


>gi|218132702|ref|ZP_03461506.1| hypothetical protein BACPEC_00563 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992428|gb|EEC58431.1| hypothetical protein BACPEC_00563 [Bacteroides pectinophilus ATCC
           43243]
          Length = 160

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQAL 60
           + D ++M  A++ +R        +P + C+IV    +I RG            HAE+ A+
Sbjct: 7   NDDEKYMKEAIKQARKA-YKIGESP-IGCVIVYQNKIIARGYNRRNIDKTTLGHAEITAI 64

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A +          T YVTLEPC        CA  I++  I RVV+   +P    +G  
Sbjct: 65  RKASKVIGDWRLEDCTIYVTLEPC------QMCAGAIVQARIPRVVIGAMNPKAGCAGSV 118

Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
           L  L       +  +   ++  E    + ++ 
Sbjct: 119 LNLLEIPQFNHQCDVERGVLADECSGLMSSFF 150


>gi|302384616|ref|YP_003820438.1| CMP/dCMP deaminase zinc-binding protein [Clostridium
           saccharolyticum WM1]
 gi|302195244|gb|ADL02815.1| CMP/dCMP deaminase zinc-binding protein [Clostridium
           saccharolyticum WM1]
          Length = 164

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 17/128 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
           + D ++M AA+R +    G     P + C+IV +  +I RG            HAE+ A+
Sbjct: 2   TIDEKYMRAAIRQAEKA-GAMGEVP-IGCVIVYEDKIIARGYNRRTIDKNVLSHAEINAI 59

Query: 61  EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A          G T YVTLEPC      P CA  I++  I +V++   +     +G  
Sbjct: 60  RKACRKVGDWRLEGCTMYVTLEPC------PMCAGAIVQARIPKVIMGCMNAKAGCAGSV 113

Query: 116 LQWLSQKG 123
           L    Q G
Sbjct: 114 LDLFHQDG 121


>gi|297543592|ref|YP_003675894.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296841367|gb|ADH59883.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 148

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
           +FM AA+  +     L      V  +IVKD  +IGRG            HAE+ A++EA 
Sbjct: 4   KFMKAAILEANKSYQLREV--PVGAVIVKDDQIIGRGFNQKEATNDATAHAEIMAIKEAC 61

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           +          + YVTLEPC      P CA  I+E  I+RV +  +      +G  +  L
Sbjct: 62  KTLGSWRLDDCSMYVTLEPC------PMCAGAILEARIKRVYIGTESDKSGAAGTVINLL 115

Query: 120 S-----QKGIIVDRMMESEGKIFLHAYL 142
           +      K  +   +ME E K+ L  + 
Sbjct: 116 NNPDLGSKTEVYFGIMEDECKMLLENFF 143


>gi|271967965|ref|YP_003342161.1| pyrimidine reductase riboflavin biosynthesis-like protein
           [Streptosporangium roseum DSM 43021]
 gi|270511140|gb|ACZ89418.1| Pyrimidine reductase riboflavin biosynthesis- like protein
           [Streptosporangium roseum DSM 43021]
          Length = 240

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 68/192 (35%), Gaps = 12/192 (6%)

Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203
                   + + +  S D    + G       G   +    +LR  +D ++VG  TV  +
Sbjct: 18  YAYPDGPCVRVNMVASADGGTWLEGLSGGLSGG-GDRRIFGVLRGLADVVVVGAATVRTE 76

Query: 204 -----DPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALL-APVIIVTENDDPV 255
                 P  + R    G     P+ ++      L L   +   A   A  I++T    P 
Sbjct: 77  GYGPARPRESWRPLREGRPAAPPVAVV-TRRLDLDLTGPLFAEAEPYARTIVITCEAAPA 135

Query: 256 LALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
                   + ++I    D  DL   +  L  RG+  +L EGG  +      + LVD + L
Sbjct: 136 ERREEAAGHADVIVAGRDRVDLAAAVKELGERGLGRVLCEGGPKINAQLAAAGLVDELCL 195

Query: 314 YRSQIVIGEGGI 325
             S ++IG    
Sbjct: 196 TLSPMLIGGDAA 207


>gi|296136215|ref|YP_003643457.1| CMP/dCMP deaminase zinc-binding protein [Thiomonas intermedia K12]
 gi|295796337|gb|ADG31127.1| CMP/dCMP deaminase zinc-binding protein [Thiomonas intermedia K12]
          Length = 187

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 56/155 (36%), Gaps = 22/155 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P    D  FM  AL  ++    L      V  +IVKDG VI  G     G      HAE+
Sbjct: 7   PDLEADRAFMRLALDQAQNAWLL--GEVPVGAVIVKDGKVIATGYNRPIGDHDPTAHAEI 64

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL +A            T YVTLEPC+       CA  ++     RVV    DP    +
Sbjct: 65  VALRQAAHLLGNYRLPECTLYVTLEPCAM------CAMALLHARFARVVFGARDPKTGAA 118

Query: 113 GRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
           G  +       L+    I   + +      L  + 
Sbjct: 119 GSVVDLFAEPRLNHHCDITPEIEQEACSALLQDFF 153


>gi|315659096|ref|ZP_07911961.1| zinc-binding domain protein [Staphylococcus lugdunensis M23590]
 gi|315495820|gb|EFU84150.1| zinc-binding domain protein [Staphylococcus lugdunensis M23590]
          Length = 158

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 60/152 (39%), Gaps = 22/152 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  +M  A+  +R    +      +  +IVKD  VI R      T+     HAE  A+E 
Sbjct: 4   DEYYMKIAIAEARKAEAI--GEVPIGAVIVKDTQVIARAHNLRETSQQPTAHAEHIAIER 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A E          T YVTLEPC        CA  I+   I RVV    DP    SG  + 
Sbjct: 62  ASEVLGSWRLEACTLYVTLEPC------VMCAGAIVMSRIPRVVYGAIDPKGGCSGSLMN 115

Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYLTR 144
            L       + I+   ++E E    L ++  R
Sbjct: 116 LLEQPQFNHQAIVKTGVLEQECGQLLRSFFQR 147


>gi|326390318|ref|ZP_08211877.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter ethanolicus JW
           200]
 gi|325993595|gb|EGD52028.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter ethanolicus JW
           200]
          Length = 148

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 65/148 (43%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
           RFM AA+  ++    L      V  +IVKDG +IG+G            HAE+ A++EA 
Sbjct: 4   RFMEAAILEAKKSYQL--GEVPVGAVIVKDGQIIGKGFNQKESSNDATTHAEILAIKEAC 61

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           +          + YVTLEPC      P CA  I+E  I+RV +  +      +G  +  L
Sbjct: 62  KTLGSWRLDDCSMYVTLEPC------PMCAGAILESRIKRVYIGAESERTGAAGTVVDIL 115

Query: 120 S-----QKGIIVDRMMESEGKIFLHAYL 142
           +      K  +   +ME E K  L  + 
Sbjct: 116 NNSYLGSKTEVYFGIMEEECKTLLKDFF 143


>gi|307267454|ref|ZP_07548942.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306917535|gb|EFN47821.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 148

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 65/148 (43%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
           RFM AA+  ++    L      V  +IVKDG +IG+G            HAE+ A++EA 
Sbjct: 4   RFMEAAILEAKKSYQL--GEVPVGAVIVKDGQIIGKGFNQKESSNDATAHAEILAIKEAC 61

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           +          + YVTLEPC      P CA  I+E  I+RV +  +      +G  +  L
Sbjct: 62  KTLGSWRLDDCSMYVTLEPC------PMCAGAILESRIKRVYIGAESERTGAAGTVVDIL 115

Query: 120 S-----QKGIIVDRMMESEGKIFLHAYL 142
           +      K  +   +ME E K  L  + 
Sbjct: 116 NNSYLGSKTEVYFGIMEEECKTLLKDFF 143


>gi|294340450|emb|CAZ88831.1| tRNA-specific adenosine deaminase [Thiomonas sp. 3As]
          Length = 187

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 56/155 (36%), Gaps = 22/155 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P    D  FM  AL  ++    L      V  +IVKDG VI  G     G      HAE+
Sbjct: 7   PDLEADRAFMRLALDQAQNAWLL--GEVPVGAVIVKDGKVIATGYNRPIGDHDPTAHAEI 64

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+ +A            T YVTLEPC+       CA  ++     RVV    DP    +
Sbjct: 65  VAIRQAAHLLGNYRLPECTLYVTLEPCAM------CAMALLHARFARVVFGARDPKTGAA 118

Query: 113 GRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
           G  +       L+    I   + +      L  + 
Sbjct: 119 GSVVDLFAEPRLNHHCDITPEIEQEACSALLQDFF 153


>gi|289551636|ref|YP_003472540.1| tRNA-specific adenosine-34 deaminase [Staphylococcus lugdunensis
           HKU09-01]
 gi|289181167|gb|ADC88412.1| tRNA-specific adenosine-34 deaminase [Staphylococcus lugdunensis
           HKU09-01]
          Length = 158

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 60/152 (39%), Gaps = 22/152 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  +M  A+  +R    +      +  +IVKD  VI R      T+     HAE  A+E 
Sbjct: 4   DEYYMKIAIAEARKAEAI--GEVPIGAVIVKDTQVIARAHNLRETSQQPTAHAEHIAIER 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A E          T YVTLEPC        CA  I+   I RVV    DP    SG  + 
Sbjct: 62  ASEVLGSWRLEACTLYVTLEPC------VMCAGAIVMSRIPRVVYGAIDPKGGCSGSLMN 115

Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYLTR 144
            L       + I+   ++E E    L ++  R
Sbjct: 116 LLEQPQLNHQAIVKTGVLEQECGQLLRSFFQR 147


>gi|119486194|ref|ZP_01620254.1| bifunctional deaminase-reductase-like protein [Lyngbya sp. PCC
           8106]
 gi|119456685|gb|EAW37814.1| bifunctional deaminase-reductase-like protein [Lyngbya sp. PCC
           8106]
          Length = 252

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 77/234 (32%), Gaps = 27/234 (11%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
            R H T+ +A+S D  I                  +    A +D +L G GT+      L
Sbjct: 11  NRPHTTVILAMSADGKIADKNRSPARFGSPTDTTHLETQIADADGVLFGRGTLDTYGTTL 70

Query: 208 TC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
           +         R    +   P++I+     K++ + +  + ++   ++  ++  + V    
Sbjct: 71  SVSSEELLQRRQQQEKSPQPIQIVCSSSGKINPNLRFFQQSVPRWLLTTSQGSEQVKREN 130

Query: 260 FRKKNINIIYCDCR---------------DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
               N+     D +               D        +  G+  L V GG  +  S I 
Sbjct: 131 LHLTNLPDKSADFQQILIAKTLSENSNLIDWNDAFQQFMQMGLKRLAVLGGGQLVGSLIQ 190

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEE----GYLEKNFMCVRRDYFGSDVCLEY 354
             L+D   L    +++G    P+P+E       +      +       ++ + Y
Sbjct: 191 MDLIDEFWLTVCPLILGGVDAPTPVEGKGFLADVSPRLQLLEVKQVEQEIFIHY 244


>gi|127512238|ref|YP_001093435.1| CMP/dCMP deaminase, zinc-binding [Shewanella loihica PV-4]
 gi|126637533|gb|ABO23176.1| CMP/dCMP deaminase, zinc-binding [Shewanella loihica PV-4]
          Length = 273

 Score = 97.3 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 60/143 (41%), Gaps = 12/143 (8%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE---E 66
           +M  A+   R   G     P V  +IV  G  +  G     G  HAE  A+EEA E   +
Sbjct: 9   YMKQAVDQMRMSEGK---GPKVGAVIVTKGHQVIAG-HKKNGT-HAERAAIEEAQEKKID 63

Query: 67  ARGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            RGAT Y TLEPC   G +   C+  I   GI+ V +   DP+  +   G + L  +GI 
Sbjct: 64  LRGATLYSTLEPCVSVGSKKEACSDLISRVGIKTVYIGRYDPNPNIQRLGWKKLRDEGIS 123

Query: 126 VDRM---MESEGKIFLHAYLTRQ 145
           +        +E       ++   
Sbjct: 124 LHDFDIEFRNEIDEINQTFMEHF 146


>gi|289577296|ref|YP_003475923.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter
           italicus Ab9]
 gi|289527009|gb|ADD01361.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter
           italicus Ab9]
          Length = 148

 Score = 97.3 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAG 64
           +FM AA+  +     L      V  +IVKD  +IGRG            HAE+ A++EA 
Sbjct: 4   KFMKAAILEANKSYQLREV--PVGAVIVKDDQIIGRGFNQKEATNDVTAHAEIMAIKEAC 61

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           +          + YVTLEPC      P CA  I+E  I+RV +  +      +G  +  L
Sbjct: 62  KTLGSWRLDDCSIYVTLEPC------PMCAGAILEARIKRVYIGTESDKSGAAGTVINLL 115

Query: 120 S-----QKGIIVDRMMESEGKIFLHAYL 142
           +      K  +   +ME E K+ L  + 
Sbjct: 116 NNPDLGSKTEVYFGIMEDECKMLLENFF 143


>gi|145589597|ref|YP_001156194.1| CMP/dCMP deaminase, zinc-binding [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048003|gb|ABP34630.1| CMP/dCMP deaminase, zinc-binding protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 152

 Score = 97.3 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 60/156 (38%), Gaps = 22/156 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
           M  +  D +FM  A+  ++    L    P V  ++V+DG VI          +    HAE
Sbjct: 1   MSQAELDQQFMQQAIEQAKLAA-LAGEVP-VGAVVVRDGKVISSAFNKPISTHDPSAHAE 58

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL  A +        G T YVTLEPC        C+  ++   + RVV    DP    
Sbjct: 59  MLALRAAAQSEENYRLPGTTLYVTLEPC------VMCSGAMLHARLDRVVYGAADPKTGA 112

Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
           +G      S K I     +   +M  E    L  + 
Sbjct: 113 AGSVFDVFSSKQINHQTSVEGGVMGEECGQLLRNFF 148


>gi|90962204|ref|YP_536120.1| cytosine/adenosine deaminase [Lactobacillus salivarius UCC118]
 gi|301300462|ref|ZP_07206662.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|90821398|gb|ABE00037.1| Cytosine/adenosine deaminase [Lactobacillus salivarius UCC118]
 gi|300851959|gb|EFK79643.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 166

 Score = 97.3 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 23/157 (14%)

Query: 1   MPVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHA 55
           MP++     +FM  AL  ++    +      + C+IVKDG +IGRG      +     HA
Sbjct: 1   MPLTDEQKVKFMKEALFEAKLAAKI--GEVPIGCVIVKDGKIIGRGHNLREHSQNATLHA 58

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+EEA E            +VTLEPC      P C+  II   I  V     DP   
Sbjct: 59  EMLAIEEANETVNSWRLVDTQLFVTLEPC------PMCSGAIINSRIPEVYYGASDPKAG 112

Query: 111 VSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
             G  +  L       +  +   ++E+E    L  + 
Sbjct: 113 TVGTLMNLLEDSRFNHQSFVEKGILENECASILKDFF 149


>gi|224101625|ref|XP_002312358.1| predicted protein [Populus trichocarpa]
 gi|222852178|gb|EEE89725.1| predicted protein [Populus trichocarpa]
          Length = 1364

 Score = 97.3 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 64/176 (36%), Gaps = 17/176 (9%)

Query: 7    DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
            D  FM  AL  ++     +   P V  ++V  G +I RG            HAE+  + E
Sbjct: 1163 DEMFMREALLEAKKAA-DSWEVP-VGAVLVHHGRIIARGHNLVEELRDSTAHAEMICIRE 1220

Query: 63   AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            A  + R       T Y+TLEPC      P CA  I++  I+ +V    +  +   G  ++
Sbjct: 1221 ASNKLRTWRLSETTLYITLEPC------PMCAGAILQARIKTLVWGAPNKLLGADGSWIR 1274

Query: 118  WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP 173
                 G      + ++    +H +  +   +R  +  + A        +       
Sbjct: 1275 LFPDAGEENGSELSNKPAAPVHPFHRKMTIRRGILESECADVMQQFFQLRRRKKEK 1330


>gi|160882011|ref|YP_001560979.1| CMP/dCMP deaminase zinc-binding [Clostridium phytofermentans ISDg]
 gi|160430677|gb|ABX44240.1| CMP/dCMP deaminase zinc-binding [Clostridium phytofermentans ISDg]
          Length = 161

 Score = 97.3 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 24/153 (15%)

Query: 6   FDAR--FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQA 59
            D +  +M AA+  ++    +      + C+IV D  +I RG            HAE+ A
Sbjct: 1   MDEKIKYMKAAIVQAKKAALI--GEVPIGCVIVYDNKIIARGYNKRNTKKTTLAHAEILA 58

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           +E+A          G T YVTLEPC        C+  I++  + RVV+   +P    +G 
Sbjct: 59  IEKASRYLNDWRLEGCTMYVTLEPCQM------CSGAIVQSRMDRVVIGSMNPKAGCAGS 112

Query: 115 GLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
            L  L       +  +   +M+ E    L  + 
Sbjct: 113 ILNLLQMEQFNHQVELETGVMQEECTKLLQDFF 145


>gi|186685266|ref|YP_001868462.1| deaminase-reductase domain-containing protein [Nostoc punctiforme
           PCC 73102]
 gi|186467718|gb|ACC83519.1| bifunctional deaminase-reductase domain protein [Nostoc punctiforme
           PCC 73102]
          Length = 226

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 86/219 (39%), Gaps = 14/219 (6%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD------- 203
             T+ +A++ D  I      +      + +  +    + +D +LVG GT+ A+       
Sbjct: 5   QTTVVLAMTADGKISAVDPKAPRDADPVDQAHLEYQASFADLVLVGAGTIRAEGGTYTIR 64

Query: 204 DP-ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
           +P  L  R    Q   P+  ++     LSLD   +   +   +                +
Sbjct: 65  NPELLAARKVRGQSPQPITCVVSGSLDLSLDLPFLSQDIERWIFTTRTGLKRNSDATSLQ 124

Query: 263 KNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
           K   +I     DL   +  +++  RG+  ++V GG A+  + + +  ++   L    I+ 
Sbjct: 125 KLAELIDLGETDLDWDRAYSLMAERGIHKVIVLGGGALTAALLKAGRINDWWLTIWPIIY 184

Query: 321 GEGGIPSPLE-EGYLEK---NFMCVRRDYFGSDVCLEYI 355
           G    PSP+E EG+L +   +   V     GS + L Y 
Sbjct: 185 GGKHAPSPVEGEGFLPQAAPHLQLVETRQVGSQLFLNYR 223


>gi|71280259|ref|YP_270337.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing
           protein [Colwellia psychrerythraea 34H]
 gi|71145999|gb|AAZ26472.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Colwellia psychrerythraea 34H]
          Length = 182

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 56/151 (37%), Gaps = 22/151 (14%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
            D  FM  A   ++           V  ++V  G +IG G            HAE+ A+ 
Sbjct: 21  LDLTFMRRAFELAQQAEQ--HDEIPVGAVVVHQGKIIGEGFNQSIMLNDPSSHAEMNAIR 78

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           +AGE          T YVTLEPC      P CA  ++   I R+V    D     +G   
Sbjct: 79  QAGEFLNNYRLLDCTLYVTLEPC------PMCAGLLVHSRINRLVYACSDLKTGAAGSAF 132

Query: 117 QW-----LSQKGIIVDRMMESEGKIFLHAYL 142
                  L+ +  +   ++E E    L A+ 
Sbjct: 133 NLVNNPQLNHQLEVCSNILEEECSQLLSAFF 163


>gi|330504655|ref|YP_004381524.1| CMP/dCMP deaminase, zinc-binding protein [Pseudomonas mendocina
           NK-01]
 gi|328918941|gb|AEB59772.1| CMP/dCMP deaminase, zinc-binding protein [Pseudomonas mendocina
           NK-01]
          Length = 158

 Score = 96.9 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
           S D  FM  AL  +R   G       V  ++V+DG V+G+G       +    HAE+ A+
Sbjct: 10  SRDEHFMRLALAQARLGAGQ--GEVPVGAVLVQDGEVVGQGFNCPILRHDPSAHAEMVAI 67

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A +  +     G+T YVTLEPCS       CA  I+   I RVV    +P   V+   
Sbjct: 68  RAAAQSVQNYRLPGSTLYVTLEPCSM------CAGLIVHARIARVVFAASEPRAGVAISQ 121

Query: 116 LQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
            Q     +L+ + ++   ++  E    L  + 
Sbjct: 122 GQFFDQGFLNHRVLVEGGLLAEESGALLKDFF 153


>gi|291520377|emb|CBK75598.1| Cytosine/adenosine deaminases [Butyrivibrio fibrisolvens 16/4]
          Length = 179

 Score = 96.9 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEA 63
            ++M+ AL+ +R    +      + C+IV++  +I RG            HAE+ A+++A
Sbjct: 28  EKYMAQALKEARKAYDINEV--PIGCVIVQNDKIIARGYNRRNTDKSVLAHAEIAAIQKA 85

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            ++         T YVTLEPC        CA  I++  I RVVV   +P    +G  L  
Sbjct: 86  CKKTGDWRLEDCTLYVTLEPC------QMCAGAIVQARIPRVVVGAMNPKAGCAGSILNI 139

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYL 142
           L          +   ++  E K  + ++ 
Sbjct: 140 LQMHQFNHVCDLETDVLGEECKEMMKSFF 168


>gi|237808810|ref|YP_002893250.1| CMP/dCMP deaminase zinc-binding [Tolumonas auensis DSM 9187]
 gi|237501071|gb|ACQ93664.1| CMP/dCMP deaminase zinc-binding [Tolumonas auensis DSM 9187]
          Length = 164

 Score = 96.9 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 61/158 (38%), Gaps = 22/158 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56
           MP S  D  +M  A++ +R      +    V  ++V +  VIG G       +  C HAE
Sbjct: 1   MPQSEQDIHWMQYAMQLARRAE--EAGEVPVGAVLVLNNEVIGEGWNLSICRHDPCAHAE 58

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ +AG+        GAT YVTLEPC        CA  +I   I R+V    D     
Sbjct: 59  IMAIRQAGQNIGNYRLLGATLYVTLEPCIM------CAGAMIHSRIERLVYGASDLKTGA 112

Query: 112 SGRGLQWL---SQKGIIVD--RMMESEGKIFLHAYLTR 144
           +G     L       I+     +        L  +  R
Sbjct: 113 AGSVFDVLTDPRHNHIVSVIGGIEAEACSQQLSNFFRR 150


>gi|295394785|ref|ZP_06805000.1| riboflavin biosynthesis protein RibD [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294972381|gb|EFG48241.1| riboflavin biosynthesis protein RibD [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 258

 Score = 96.9 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 78/195 (40%), Gaps = 11/195 (5%)

Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD--------PE 206
            + +S D  +  A   S  ++         ++R+ +DA++VG  TV ++           
Sbjct: 47  NMVISVDGAVAGADGLSRSVSTPADMRVFSVVRSLADAVVVGAQTVRSERLTRMSPKPAH 106

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
           L  R    Q   P+ +I+     L  D   I     +PV + T   DP +    R+    
Sbjct: 107 LNQRHARGQTDVPIMVIVTSSGDLPWDR--INERGTSPVWVATNTSDPQVLAELRRHADE 164

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           ++       + +   LV RG+  L+ EGG  V   ++++ L+D + L  S  + G  G P
Sbjct: 165 VL-TGIESPQAVKDALVARGLRRLVCEGGPNVLAQWMDAGLIDEMCLTVSPKLHGTPGAP 223

Query: 327 SPLEEGYLEKNFMCV 341
               EG      + V
Sbjct: 224 RLFGEGIATARDVEV 238


>gi|314937113|ref|ZP_07844460.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
           hominis subsp. hominis C80]
 gi|313655732|gb|EFS19477.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
           hominis subsp. hominis C80]
          Length = 163

 Score = 96.9 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 57/150 (38%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  +M  A+  ++    L      +  +IVKD  +I R      T      HAE  A+E 
Sbjct: 4   DEFYMKCAIEEAKKARQL--GEVPIGAVIVKDNEIISRAHNLRETLQQPTAHAEHLAIER 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +          T YVTLEPC        CA  ++   I RVV    DP    SG  + 
Sbjct: 62  AAKVIGSWRLEDCTLYVTLEPC------VMCAGTVVMSRIPRVVYGAMDPKGGCSGSLMD 115

Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYL 142
            L       + I+   ++E E    L  + 
Sbjct: 116 LLQQPQFNHRAIVEQGVLEEECSNLLRQFF 145


>gi|196251180|ref|ZP_03149855.1| CMP/dCMP deaminase zinc-binding [Geobacillus sp. G11MC16]
 gi|196209306|gb|EDY04090.1| CMP/dCMP deaminase zinc-binding [Geobacillus sp. G11MC16]
          Length = 169

 Score = 96.9 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 64/156 (41%), Gaps = 22/156 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
           + + D  +M  A+  ++    +      +  +IV+DG VI R      T      HAE+ 
Sbjct: 9   MMNNDEYYMRLAIEEAKKAEQI--GEVPIGAVIVQDGRVIARAHNLRETEQRAIAHAEIL 66

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A++EA +         AT YVTLEPC+       CA  I+   I RVV    DP    +G
Sbjct: 67  AIDEACQATGSWRLERATLYVTLEPCAM------CAGAIVLSRIERVVFGASDPKGGCAG 120

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144
             +  L       +  +   ++ SE    L  +  R
Sbjct: 121 TLMNLLQESRFNHQADVTSGVLASECGSLLSDFFRR 156


>gi|15612596|ref|NP_240899.1| Cu binding protein (Mn oxidation) [Bacillus halodurans C-125]
 gi|10172645|dbj|BAB03752.1| Cu binding protein (Mn oxidation) [Bacillus halodurans C-125]
          Length = 159

 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 22/156 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           +   D  +M  AL  +     L      +  +IVKDG+V+ +             HAE+ 
Sbjct: 1   MQKDDLYYMREALVQADEAERL--GEVPIGAVIVKDGVVVAKAYNLREINQQAIAHAELL 58

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+E+A +        G T YVTLEPC      P CA  I++  I RVV    DP    +G
Sbjct: 59  AIEKACKALGTWRLTGCTLYVTLEPC------PMCAGAIVQSRIERVVYGATDPKAGCAG 112

Query: 114 RGLQWL-----SQKGIIVDRMMESEGKIFLHAYLTR 144
             +  L     + + I+   ++E E    L A+  +
Sbjct: 113 TLMNLLNEERFNHQTIVESGVLEEECSQRLTAFFRK 148


>gi|167038582|ref|YP_001666160.1| CMP/dCMP deaminase [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167038705|ref|YP_001661690.1| CMP/dCMP deaminase [Thermoanaerobacter sp. X514]
 gi|256751425|ref|ZP_05492303.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300913736|ref|ZP_07131053.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter sp. X561]
 gi|307723248|ref|YP_003902999.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter sp.
           X513]
 gi|320116977|ref|YP_004187136.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166852945|gb|ABY91354.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter sp. X514]
 gi|166857416|gb|ABY95824.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256749644|gb|EEU62670.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300890421|gb|EFK85566.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter sp. X561]
 gi|307580309|gb|ADN53708.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter sp.
           X513]
 gi|319930068|gb|ADV80753.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 148

 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 65/148 (43%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
           +FM AAL  ++    L      V  +IVK+G +IGRG            HAE+ A++EA 
Sbjct: 4   KFMEAALLEAKKSYQL--GEVPVGAVIVKEGQIIGRGFNQKESTNDATAHAEIIAIKEAC 61

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           +          + YVTLEPC      P CA  I+E  I+RV +  +      +G  +  L
Sbjct: 62  KTLGSWRLDDCSMYVTLEPC------PMCAGAILEARIKRVYIGAESDKSGAAGTVVDIL 115

Query: 120 S-----QKGIIVDRMMESEGKIFLHAYL 142
           +      K  +   +ME E K  L  + 
Sbjct: 116 NNSYLGSKTEVYFGIMEEECKTLLKDFF 143


>gi|94501251|ref|ZP_01307773.1| cytidine/deoxycytidylate deaminase family protein [Oceanobacter sp.
           RED65]
 gi|94426678|gb|EAT11664.1| cytidine/deoxycytidylate deaminase family protein [Oceanobacter sp.
           RED65]
          Length = 164

 Score = 96.5 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 62/158 (39%), Gaps = 22/158 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           M     D  FM+ A++ ++    L      V  ++V DG VIG G            HAE
Sbjct: 1   MSQELQDEHFMALAIQQAKKADALNEV--PVGAVVVLDGEVIGEGYNQPISGCDPTAHAE 58

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           V AL +A +         A  YVT+EPC        CA  I+   IRR+V    +P   V
Sbjct: 59  VMALRQAAKNVSNYRLVNADLYVTIEPC------TMCAGAIVHSRIRRLVYGATEPKAGV 112

Query: 112 SGRGLQWL-----SQKGIIVDRMMESEGKIFLHAYLTR 144
                  L     + +  +V  ++  +    + A+  R
Sbjct: 113 IESQQTILTQSYFNHRVEVVSGILLDQCTDIVQAFFRR 150


>gi|302783817|ref|XP_002973681.1| hypothetical protein SELMODRAFT_413953 [Selaginella moellendorffii]
 gi|300158719|gb|EFJ25341.1| hypothetical protein SELMODRAFT_413953 [Selaginella moellendorffii]
          Length = 311

 Score = 96.5 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 49/138 (35%), Gaps = 5/138 (3%)

Query: 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV 283
           +     L L+  +   +    +++               + + ++  D    K ++    
Sbjct: 1   MSRTLNLPLELHLWDVSNAHTIVMTQRGARREFQRELVTRGVEVVEFDFLTPKAVMDYCY 60

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
            RG   +L E G A++   + + ++  +I + +  +IG    P+P+ E  +      +  
Sbjct: 61  ERGFLMVLWECGGALSAPALAAGIIHKVIAFVAPKIIG-VTAPTPVGELGMVDMTQALNL 119

Query: 344 DYFGSDVCLEYIGKNLCL 361
                DV  E +   +  
Sbjct: 120 L----DVTFEQLIPRMKS 133


>gi|242095760|ref|XP_002438370.1| hypothetical protein SORBIDRAFT_10g014230 [Sorghum bicolor]
 gi|241916593|gb|EER89737.1| hypothetical protein SORBIDRAFT_10g014230 [Sorghum bicolor]
          Length = 1607

 Score = 96.5 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 63/188 (33%), Gaps = 17/188 (9%)

Query: 7    DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
            D  FM  AL  ++    +    P V  ++V++G +I RG            HAE+  + E
Sbjct: 1409 DELFMREALLEAQRAADI-WEVP-VGAVLVQNGEIIARGCNLVEDLRDSTAHAEIVCIRE 1466

Query: 63   AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            A  + +       T YVTLEPC+       CA  I++  I  VV    +  +   G  ++
Sbjct: 1467 ASNKLKTWRLADTTLYVTLEPCAM------CAGAILQARIDTVVWGAPNKLLGADGSWVR 1520

Query: 118  WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
                 G        ++ K     +            L    S+            P +  
Sbjct: 1521 LFPGDGQTNTLDSTNQSKAAGPVHPFHPKITIRRGVLSTECSEIMQQFFQLRRKKPQSPP 1580

Query: 178  ISKNQVHL 185
             +    H 
Sbjct: 1581 QAHRHGHH 1588


>gi|242372784|ref|ZP_04818358.1| deaminase [Staphylococcus epidermidis M23864:W1]
 gi|242349557|gb|EES41158.1| deaminase [Staphylococcus epidermidis M23864:W1]
          Length = 168

 Score = 96.5 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 63/158 (39%), Gaps = 22/158 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  +M  A++ +R    L      +  +IVKD  VI R      T      HAE  A+E 
Sbjct: 4   DNDYMRLAIKEARKAQEL--GEVPIGAVIVKDNHVIARAHNLRETLQQPTAHAEHIAIER 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A E          T YVTLEPC        CA  I+   I RVV    DP    +G  + 
Sbjct: 62  ASEVIGSWRLEDCTLYVTLEPC------VMCAGAIVMSRIPRVVYGAIDPKGGCTGSLMN 115

Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
            L+      + I+   ++E+E    L  +     +++ 
Sbjct: 116 LLAQPQFNHRAIVESGILENECSTLLREFFKNIRQQKR 153


>gi|261208197|ref|ZP_05922870.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium TC 6]
 gi|289566587|ref|ZP_06447008.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium D344SRF]
 gi|294615830|ref|ZP_06695673.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1636]
 gi|260077454|gb|EEW65172.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium TC 6]
 gi|289161632|gb|EFD09511.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium D344SRF]
 gi|291591320|gb|EFF22986.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1636]
          Length = 171

 Score = 96.5 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 26/160 (16%)

Query: 1   MPVSSFD----ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGC 52
           M  ++ D     ++M  AL  ++    L      +  ++V DG V+GRG     T     
Sbjct: 1   MVNTNLDAVEKEKWMRLALAEAKKAEMLHEV--PIGAVVVLDGKVVGRGYNLRETTQDAT 58

Query: 53  PHAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
            HAE+ A++EA E+        AT +VTLEPC      P C+  +I   +  V     DP
Sbjct: 59  THAEMLAIKEACEKVGSWRLEDATLFVTLEPC------PMCSGAMILSRVAEVYFGAYDP 112

Query: 108 DVRVSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
               +G  +  L       +  +   ++E E  + L  + 
Sbjct: 113 KGGTAGTLMNLLEDERFNHQAYVEGGILEDECGMILTDFF 152


>gi|258510122|ref|YP_003183556.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257476848|gb|ACV57167.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 161

 Score = 96.5 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 17/129 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M   + D RFM  AL  +            V  ++V++G ++G G     T   G  HAE
Sbjct: 1   MMEQAADERFMRRALELAEEAA--RWGEVPVGAVVVENGRIVGEGFNRRETWRDGTAHAE 58

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+EEA     G        YVTLEPC      P CA  I+   ++RVV    D     
Sbjct: 59  MLAIEEASRRLGGWRLTNCVLYVTLEPC------PMCAGAIVLSRVQRVVYGATDAKGGA 112

Query: 112 SGRGLQWLS 120
               ++ L 
Sbjct: 113 VASKVRLLE 121


>gi|192359003|ref|YP_001981836.1| Cytidine and deoxycytidylate deaminase zinc-binding region
           domain-containing protein [Cellvibrio japonicus Ueda107]
 gi|190685168|gb|ACE82846.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Cellvibrio japonicus Ueda107]
          Length = 201

 Score = 96.5 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 63/162 (38%), Gaps = 22/162 (13%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
            D+ +M  A+  +    G       V  +IV++GI IG G     T+     HAE+ AL 
Sbjct: 9   DDSYWMRRAIALA--SQGEALGEVPVGAVIVREGIAIGEGFNQPITSRDPSAHAEIVALR 66

Query: 62  EAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           +A    +     GAT YVTLEPC        C   ++   I R+V    +P         
Sbjct: 67  QAAAHLQNYRLPGATLYVTLEPC------TMCVGALVHARITRLVYGTAEPKAGAVTSRA 120

Query: 117 QWL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHIT 153
           + L     + +      +M +E +  L  +  ++  +     
Sbjct: 121 RLLDADYVNHRVSYEGGLMAAECQHQLSHFFQQRRLQHKQAR 162


>gi|138893694|ref|YP_001124147.1| cytosine deaminase [Geobacillus thermodenitrificans NG80-2]
 gi|134265207|gb|ABO65402.1| Cytosine deaminase [Geobacillus thermodenitrificans NG80-2]
          Length = 161

 Score = 96.5 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 63/156 (40%), Gaps = 22/156 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
           + + D  +M  A+  ++    +      +  +IV+DG VI R      T      HAE+ 
Sbjct: 1   MMNNDEYYMRLAIEEAKKAEQI--GEVPIGAVIVQDGRVIARAHNLRETEQRAIAHAEIL 58

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+ EA +         AT YVTLEPC+       CA  I+   I RVV    DP    +G
Sbjct: 59  AIAEACQATGSWRLERATLYVTLEPCAM------CAGAIVLSRIERVVFGASDPKGGCAG 112

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144
             +  L       +  +   ++ SE    L  +  R
Sbjct: 113 TLMNLLQESRFNHQADVTSGVLASECGSLLSDFFRR 148


>gi|296123852|ref|YP_003631630.1| CMP/dCMP deaminase zinc-binding protein [Planctomyces limnophilus
           DSM 3776]
 gi|296016192|gb|ADG69431.1| CMP/dCMP deaminase zinc-binding protein [Planctomyces limnophilus
           DSM 3776]
          Length = 166

 Score = 96.5 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 58/148 (39%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
           R+M  AL  ++           +  +IVKD  +IG              HAE+ A+ +A 
Sbjct: 18  RWMRQALDLAQQA--FAEEEVPIGAVIVKDDQIIGAAWNQREQLKDPTAHAEIVAITQAA 75

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW- 118
           E          T YVTLEPC      P CA  I++  I RVV  + DP         Q  
Sbjct: 76  EVIGDWRLEDCTLYVTLEPC------PMCAGAIVQARIPRVVYGITDPKAGACHTLYQIT 129

Query: 119 ----LSQKGIIVDRMMESEGKIFLHAYL 142
               L+ +  ++  ++  E K  L  + 
Sbjct: 130 DDARLNHRCAVLGGVLAQECKEILQEFF 157


>gi|310639569|ref|YP_003944327.1| cmp/dcmp deaminase zinc-binding protein [Paenibacillus polymyxa
           SC2]
 gi|309244519|gb|ADO54086.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus polymyxa
           SC2]
          Length = 165

 Score = 96.5 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 23/155 (14%)

Query: 3   VSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEV 57
           ++  D A +M  A++ +     L      +  +IVKD  +IGRG     T      HAE+
Sbjct: 1   MTIMDHAYWMREAIQEAYKAEAL--GEVPIGAVIVKDNEIIGRGYNLRETDTDPTAHAEM 58

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+ +A E            YVTLEPC      P CA  I++  +  ++    DP    +
Sbjct: 59  VAIRQASEHLGAWRLLDCRLYVTLEPC------PMCAGAIVQSRVPHLIYGTTDPKAGCA 112

Query: 113 GRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
           G  +  L          +   +++ E    L  + 
Sbjct: 113 GTLMNLLQEPRFNHCTEVTSGVLQEECASMLTNFF 147


>gi|158335091|ref|YP_001516263.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Acaryochloris marina MBIC11017]
 gi|158305332|gb|ABW26949.1| riboflavin biosynthesis protein RibD C-terminus domain protein
           [Acaryochloris marina MBIC11017]
          Length = 230

 Score = 96.5 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 83/225 (36%), Gaps = 19/225 (8%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA----- 202
           +R   T+ +A+S D  I  A               +    A +D IL G  T+ A     
Sbjct: 7   QRPTTTVVLAMSADGKIADAQHSPPEFGSDEDYAHLERQVAAADGILFGSATLKAGETAM 66

Query: 203 -----DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
                D   +  RL   Q   P +I+      L  + K  + A+    ++ T+       
Sbjct: 67  RVVTQD--LINARLERGQPEQPAQIVCTRSGDLDPNLKFFQQAVPH-WLVTTQAGGQSWQ 123

Query: 258 LAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
                + I     + +  D  + L  +   G+  + V GG  +  + +   L+D + L  
Sbjct: 124 GTSHFEQIFTYGTEAQSIDWGQTLASMPALGIHKIAVLGGGQIVAALLAEDLIDELHLTV 183

Query: 316 SQIVIGEGGIPSPL-EEGYLEKN---FMCVRRDYFGSDVCLEYIG 356
             ++IG    P+P+  +G+L+++      +      +++ L Y  
Sbjct: 184 CPLLIGGASTPTPVAGQGWLQQDAPGLELLSVKQVENELFLHYRR 228


>gi|160936895|ref|ZP_02084259.1| hypothetical protein CLOBOL_01784 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440085|gb|EDP17832.1| hypothetical protein CLOBOL_01784 [Clostridium bolteae ATCC
           BAA-613]
          Length = 244

 Score = 96.5 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 22/151 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEE 62
           D  FM  ALR ++    +      + C+IV+   +I RG            HAE+ ++++
Sbjct: 95  DEGFMREALRQAQKAAAIGDV--PIGCVIVRGDKIIARGYNRRNADKSVLSHAEIISIKK 152

Query: 63  AGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++         T YVTLEPC      P CA  I++  I R+ V   +P    +G  L 
Sbjct: 153 ACKKIGDWRLEDCTMYVTLEPC------PMCAGAIVQARIPRIAVGCMNPKAGCAGSVLD 206

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLT 143
            L   G      + + ++E E    +  +  
Sbjct: 207 MLHVPGFNHQAEVTEGVLEQECSKLMSDFFQ 237


>gi|307132102|ref|YP_003884118.1| tRNA-specific adenosine-34 deaminase [Dickeya dadantii 3937]
 gi|306529631|gb|ADM99561.1| tRNA-specific adenosine-34 deaminase [Dickeya dadantii 3937]
          Length = 167

 Score = 96.1 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 65/175 (37%), Gaps = 22/175 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           M     D  +M  AL  ++      +    V  ++V+   +IG G            HAE
Sbjct: 1   MSSQMDDEFWMRHALTLAQRAW--DAGEVPVGAVLVRGDKIIGEGWNRPISRNDPTAHAE 58

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL++ G+  +       T Y+TLEPC        CA  +I   I R+V    D     
Sbjct: 59  IMALQQGGQALQNYRLLDTTLYITLEPC------VMCAGAMIHSRINRLVYGAADAKTGA 112

Query: 112 SGRGLQWLSQKG-----IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           +G  +  L   G     +I D ++  E    L  +   + +++         S D
Sbjct: 113 AGSLVDILRHPGMNHHIVITDGVLADECSELLSRFFRMRRQQQRDARSAERDSSD 167


>gi|317126762|ref|YP_004093044.1| CMP/dCMP deaminase zinc-binding protein [Bacillus cellulosilyticus
           DSM 2522]
 gi|315471710|gb|ADU28313.1| CMP/dCMP deaminase zinc-binding protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 161

 Score = 96.1 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 22/158 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56
           +  S  D  FM  AL  +   + +      +  +IV+D ++I RG            HAE
Sbjct: 3   LKQSKEDIFFMEQALVEAEKAMEI--GEVPIGAIIVRDNVIIARGHNLREQQQMVTNHAE 60

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+++A E          T YVTLEPC      P CA  I++  ++RVV    DP    
Sbjct: 61  LIAIQKACEEVGSWRLEDCTLYVTLEPC------PMCAGAIVQSRMKRVVYGAADPKAGC 114

Query: 112 SGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLTR 144
            G  +       L+ +  +   + E E    L  +  +
Sbjct: 115 CGSLMNLLDEPRLNHQVYVTSGLYEEESSRLLKDFFKK 152


>gi|291302009|ref|YP_003513287.1| CMP/dCMP deaminase zinc-binding protein [Stackebrandtia nassauensis
           DSM 44728]
 gi|290571229|gb|ADD44194.1| CMP/dCMP deaminase zinc-binding protein [Stackebrandtia nassauensis
           DSM 44728]
          Length = 419

 Score = 96.1 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 3/125 (2%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEAGE 65
           D  ++  A+  +      + T  SV  +IV DG V+  G +       HAE  AL +  +
Sbjct: 3   DEHWLRQAIALAAK-CPPSDTAFSVGAVIVADGRVLATGYSRETDPHDHAEEAALSKLDQ 61

Query: 66  EARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +  GAT Y +LEPC      P  CA+ II   + RVV    +PD  V  +GL+ L++  +
Sbjct: 62  DLSGATVYSSLEPCGQRASRPVSCAELIIAARVPRVVYAWREPDTFVQPKGLRLLAEARV 121

Query: 125 IVDRM 129
            + ++
Sbjct: 122 ELVQL 126


>gi|317499420|ref|ZP_07957687.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893292|gb|EFV15507.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 161

 Score = 96.1 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60
           + + ++M  A++ ++        +  + C+IV+D  +I R             HAE+ A+
Sbjct: 2   TQEEKYMKEAIKQAKKAA--VIGDVPIGCVIVEDDKIIARAYNQRNKKKTTLAHAELLAI 59

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           ++A ++         T Y+TLEPC        CA  I++  I +VV+   +P    +G  
Sbjct: 60  QKASKKVNDWRLEDCTMYITLEPCQM------CAGAIVQARIPKVVIGAMNPKAGCAGSV 113

Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
           L  L       +  I   ++E E    L  + 
Sbjct: 114 LNILQIDKFNHQVEIERGILEEECSQMLSDFF 145


>gi|213026041|ref|ZP_03340488.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
          deaminase/5-amino-6-(5-phosphoribosylamino)uracil
          reductase [Salmonella enterica subsp. enterica serovar
          Typhi str. 404ty]
          Length = 59

 Score = 96.1 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 32/56 (57%)

Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
          M+ AL+ ++     T  NP+V C+IV +G ++G G     G PHAEV AL   G +
Sbjct: 1  MARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMGGRQ 56


>gi|325921804|ref|ZP_08183621.1| tRNA-adenosine deaminase [Xanthomonas gardneri ATCC 19865]
 gi|325547681|gb|EGD18718.1| tRNA-adenosine deaminase [Xanthomonas gardneri ATCC 19865]
          Length = 165

 Score = 96.1 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 68/169 (40%), Gaps = 26/169 (15%)

Query: 1   MPV----SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT----AYGG 51
           MP+    S  D ++M  AL+ +          P V  L+V  DG V+G G      ++  
Sbjct: 1   MPLDAAQSPIDQQWMQRALQLAERAERDYDEIP-VGALLVDADGNVLGEGWNFNIASHDP 59

Query: 52  CPHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
             HAE+ A+ EAG         G T YVTLEPC+       CA  +I   I RVV    D
Sbjct: 60  TAHAEIMAMREAGRRLANHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASD 113

Query: 107 PDVRVSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
           P     G     L+      +  +   ++ +E  + L  Y   +  K  
Sbjct: 114 PKTGACGSVFDLLADPRHNHRVQVSGGVLAAEASLRLTNYFRAKRGKPP 162


>gi|167766023|ref|ZP_02438076.1| hypothetical protein CLOSS21_00515 [Clostridium sp. SS2/1]
 gi|167712103|gb|EDS22682.1| hypothetical protein CLOSS21_00515 [Clostridium sp. SS2/1]
          Length = 161

 Score = 96.1 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60
           + + ++M  A++ ++        +  + C+IV+D  +I R             HAE+ A+
Sbjct: 2   TQEEKYMKEAIKQAKKAA--VIGDVPIGCVIVEDDKIIARAYNQRNKKKTTLAHAELLAI 59

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           ++A ++         T Y+TLEPC        CA  I++  I +VV+   +P    +G  
Sbjct: 60  QKASKKVNDWRLEDCTMYITLEPCQM------CAGAIVQARIPKVVIGAMNPKAGCAGSV 113

Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
           L  L       +  I   ++E E    L  + 
Sbjct: 114 LNILQIDKFNHQVEIERGILEEECSQMLSDFF 145


>gi|297582358|ref|YP_003698138.1| CMP/dCMP deaminase zinc-binding protein [Bacillus selenitireducens
           MLS10]
 gi|297140815|gb|ADH97572.1| CMP/dCMP deaminase zinc-binding protein [Bacillus selenitireducens
           MLS10]
          Length = 174

 Score = 96.1 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 64/158 (40%), Gaps = 24/158 (15%)

Query: 1   MPVSSF--DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPH 54
           M  S    D  +M  AL  +     +      +  +IVKD I+I RG     T      H
Sbjct: 1   MKTSQQLKDEAYMKEALTEADKAEAI--GEVPIGAVIVKDDIIIARGYNERETKQRATGH 58

Query: 55  AEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AE+ A+EEA          G T YVTLEPC      P CA  I++  I RVV   DDP  
Sbjct: 59  AELVAIEEACRILKTWRLEGCTLYVTLEPC------PMCAGAIVQSRIDRVVYGADDPKG 112

Query: 110 RVSGRGLQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
              G  +  L     +   ++    ++ E    L ++ 
Sbjct: 113 GSCGTVVNLLDEPKFNHAPLVTSGTLKEEAADRLSSFF 150


>gi|229491248|ref|ZP_04385074.1| riboflavin biosynthesis protein RibD domain protein [Rhodococcus
           erythropolis SK121]
 gi|229321787|gb|EEN87582.1| riboflavin biosynthesis protein RibD domain protein [Rhodococcus
           erythropolis SK121]
          Length = 249

 Score = 96.1 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 83/231 (35%), Gaps = 18/231 (7%)

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           Y   +   +  + +    S D  + +    S  +     K+   +LR   D ++VG GT 
Sbjct: 19  YAYPENLSQPWMRVNFVSSIDGCVAV-DGVSGGLGTPADKSVFGILRELCDVVVVGAGTA 77

Query: 201 LAD--------DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252
            A+        D     R        P  +++  H  +  +S++++   + P+++V  + 
Sbjct: 78  RAENYGGVQVSDEARARRTADGLAPVPPILVVSAHASIDSESRLLRDTEVPPILVVGRDA 137

Query: 253 DPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
           D     A R     +   D  ++    +   L  R +  +L EGG ++    I    VD 
Sbjct: 138 DSAAISALRSAGAQVEVTDSPNVTSGDIDRALSARKLRRVLCEGGPSLFGQLIEDNAVDE 197

Query: 311 IILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD----VCLEYIGK 357
           + +  S  ++G       L    +      +R  +   D    +   ++ +
Sbjct: 198 LCITTSPQLVGSKVGRISLSPNAMP---TAMRPAHILGDTDGTILTRWVRQ 245


>gi|284052809|ref|ZP_06383019.1| riboflavin-specific deaminase [Arthrospira platensis str. Paraca]
 gi|291566856|dbj|BAI89128.1| putative riboflavin-specific deaminase [Arthrospira platensis
           NIES-39]
          Length = 234

 Score = 96.1 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 77/227 (33%), Gaps = 18/227 (7%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA----- 202
            R H T+ +A+S D  I                  +    AQ+DA+L G GT+ A     
Sbjct: 8   TRPHTTVILAMSADGKIADLMRSPARFGSNADIIHLERQIAQADAVLFGNGTLAAYGTVL 67

Query: 203 ---DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
                  L  R    +   P++I+     K++   K  +  +  P  ++T          
Sbjct: 68  RVSSTELLGDREKNGKPPQPVQIVCSASGKINPTLKFFQQPV--PKWLLTTFLGGQPWKR 125

Query: 260 FRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
           F      +I  D  +      + L  L  R +  L V GG  +  S +    +D   L  
Sbjct: 126 FSDHFDQVIVADDSNGVITWSEALQQLRDRDIQRLAVLGGGQLVASLMAHHAIDEFHLTV 185

Query: 316 SQIVIGEGGIPSPLEEGYLEKNF----MCVRRDYFGSDVCLEYIGKN 358
              ++G    P+P++       F      +       +V L Y  K+
Sbjct: 186 CPRILGGTTSPTPVDGEGFLSRFAPHLQLLSVQQVDDEVFLHYRVKS 232


>gi|315644422|ref|ZP_07897555.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus vortex V453]
 gi|315280172|gb|EFU43465.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus vortex V453]
          Length = 163

 Score = 95.7 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 22/151 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
             +M  A+  +R    L      +  +IV+   +IGRG     T Y G  HAE+ A+ EA
Sbjct: 17  EHWMREAIAEARKAEEL--GEVPIGAVIVRGDEIIGRGYNLRETTYDGTAHAEMVAIREA 74

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            +            YVTLEPC      P CA  I++  + +++    DP    +G  +  
Sbjct: 75  SQHLGAWRLLDCRLYVTLEPC------PMCAGAIVQSRVPQLIYGTGDPKAGCAGTLMNL 128

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTR 144
           L       +  ++D +++ E    L  +  R
Sbjct: 129 LQEPRFNHRTTVIDGVLQEECASLLTQFFRR 159


>gi|20428822|emb|CAD21697.1| hypothetical protein [Azoarcus evansii]
          Length = 154

 Score = 95.7 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 61/150 (40%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M  AL  +R   G     P V  ++V DG ++GRG     G      HAEV AL +
Sbjct: 3   DEDYMRVALEQAREA-GSCDEVP-VGAVVVLDGEIVGRGFNQPIGRHDPTAHAEVMALRD 60

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A          G   YVTLEPC+       C+  I+   I RVV    DP   V+G  + 
Sbjct: 61  AAARLGNYRLPGCELYVTLEPCAM------CSGAIMHSRIARVVFGARDPKTGVAGSVID 114

Query: 118 W-----LSQKGIIVDRMMESEGKIFLHAYL 142
                 L+    I   ++  E    L ++ 
Sbjct: 115 LFAESRLNHHATISGGVLAEECGGLLSSFF 144


>gi|218438554|ref|YP_002376883.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC
           7424]
 gi|218171282|gb|ACK70015.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC
           7424]
          Length = 227

 Score = 95.7 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 75/213 (35%), Gaps = 14/213 (6%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD--- 203
            KR H  L +A++ D  I      +        K  +    +  D +L G GT+ A    
Sbjct: 1   MKRPHTILILAMTADGKIADRSRSAARFGSAADKIHLEKQISLVDGVLFGAGTLRAYQTS 60

Query: 204 ----DP-ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
               +P  L  R    +   P+ ++      L  + +          ++ T     V   
Sbjct: 61  LLICNPDFLQWRHQQNKPPQPVHLVCSASGNLDPNWRFF-EQSFPRWLVTTSTGAKVWQS 119

Query: 259 AFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
              +    I+  D  D       +   L+   + +L + GG  +  S +  +L+D   L 
Sbjct: 120 KNFQGFDRILRGDEEDNSINWCTVFEQLISLNIQTLAILGGGELVASLLEDQLIDEFYLT 179

Query: 315 RSQIVIGEGGIPSPLEE-GYLEKNFMCVRRDYF 346
              +++G    P+P+E  G+L +    +    F
Sbjct: 180 LCPLILGGKDAPTPVEGLGFLSQQAQELELLSF 212


>gi|226306344|ref|YP_002766304.1| hypothetical protein RER_28570 [Rhodococcus erythropolis PR4]
 gi|226185461|dbj|BAH33565.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 249

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 73/193 (37%), Gaps = 11/193 (5%)

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           Y   +   +  + +    S D  + +    S  +     K+   +LR   D ++VG GT 
Sbjct: 19  YAYPENLSQPWMRVNFVSSIDGCVSV-DGVSHGLGTPADKSVFGILRELCDVVVVGAGTA 77

Query: 201 LAD--------DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252
            A+        D     R  G     P  +++  H  +  +S++++   + P+++V    
Sbjct: 78  RAENYGGVQISDAARARRKAGGLAPVPQILVVSAHASIDPESRLLRDTEIPPILVVGSAA 137

Query: 253 DPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
           D     A R     +   D  ++    +   L  R +  +L EGG ++    I    VD 
Sbjct: 138 DSAAISALRSAGAQVEVTDSPNVSSGDIDRALSARKLRRVLCEGGPSLFGQLIEDNAVDE 197

Query: 311 IILYRSQIVIGEG 323
           + +  S  ++G  
Sbjct: 198 LCITTSPQLVGSK 210


>gi|149908700|ref|ZP_01897361.1| putative zinc-binding protein [Moritella sp. PE36]
 gi|149808242|gb|EDM68181.1| putative zinc-binding protein [Moritella sp. PE36]
          Length = 182

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 59/152 (38%), Gaps = 22/152 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
           D R+M  A+  +     +      V  +IV +  +IG G       +    HAE+ AL E
Sbjct: 25  DERWMQHAIMLAGKAEAIDEV--PVGAVIVLNDKIIGEGWNQSIISHDATAHAEIMALRE 82

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AG+         AT YVTLEPCS       CA  ++   ++R+V    D     +G    
Sbjct: 83  AGKTVENYRLIDATLYVTLEPCSM------CAGAMVHSRVKRLVYGAVDLKTGAAGSVFN 136

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTR 144
            +    +     +   +  SE    L  +  R
Sbjct: 137 LVEHAQLNHQIEVRSGVFASETGALLSQFFKR 168


>gi|91225086|ref|ZP_01260308.1| YfhC protein [Vibrio alginolyticus 12G01]
 gi|91190029|gb|EAS76300.1| YfhC protein [Vibrio alginolyticus 12G01]
          Length = 169

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 22/148 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEE 66
           M  A+  +            V  ++VKDG +I  G     G      HAE+Q L +AG++
Sbjct: 1   MRRAMELAEQAE--AEGEVPVGAVLVKDGEIIAEGRNRSIGTHDATAHAEIQTLRKAGQK 58

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS- 120
                    T YVTLEPC      P CA  ++   ++RVV    D     +G  L     
Sbjct: 59  LENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVFGAPDLKAGAAGTVLNLFES 112

Query: 121 ----QKGIIVDRMMESEGKIFLHAYLTR 144
                  ++   ++E E +  L A+  R
Sbjct: 113 QAAYHYALVEKGLLEDECRTQLQAFFKR 140


>gi|255546921|ref|XP_002514518.1| conserved hypothetical protein [Ricinus communis]
 gi|223546122|gb|EEF47624.1| conserved hypothetical protein [Ricinus communis]
          Length = 1624

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 62/179 (34%), Gaps = 17/179 (9%)

Query: 6    FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
             D  FM  AL  ++     T   P V  ++V+ G +I RG            HAE+  + 
Sbjct: 1099 IDEMFMREALLEAKKAA-DTWEVP-VGAVLVQHGKIIARGYNLVEELRDSTAHAEMICIR 1156

Query: 62   EAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            EA  + R       T YVTLEPC      P CA  I++  I  VV    +  +   G  +
Sbjct: 1157 EASNQLRSWRLAETTLYVTLEPC------PMCAGAILQARIDTVVWGAPNKLLGADGSWI 1210

Query: 117  QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
            +     G      +  +    +H +      +R  +  + A        +         
Sbjct: 1211 RLFPNGGGGSGSELVDKPPAPVHPFHPNMKIRRGILAPECADVMQQFFQLRRRKKAKSG 1269


>gi|28897437|ref|NP_797042.1| YfhC protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|28805649|dbj|BAC58926.1| YfhC protein [Vibrio parahaemolyticus RIMD 2210633]
          Length = 161

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 55/148 (37%), Gaps = 22/148 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEE 66
           M  AL  +            V  ++VKDG VI  G       +    HAE+Q L  AG  
Sbjct: 1   MRRALALAEQAEL--EGEVPVGAVLVKDGEVIAEGWNRSICSHDATAHAEIQTLRNAGAV 58

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS- 120
                    T YVTLEPC      P CA  ++   ++RVV    D     +G  L     
Sbjct: 59  LENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVFGAPDLKAGAAGTVLNLFES 112

Query: 121 ----QKGIIVDRMMESEGKIFLHAYLTR 144
                   +   ++E E +  L A+  R
Sbjct: 113 QAAYHYATVEKGLLEDECREQLQAFFKR 140


>gi|330936949|gb|EGH41059.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 169

 Score = 95.3 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/127 (30%), Positives = 55/127 (43%), Gaps = 17/127 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
           S D  FM  AL  +     L      V  ++V++G +IGRG            HAE+ A+
Sbjct: 10  SNDQYFMREALALASQGALL--GEVPVGAVVVQNGEIIGRGYNCPISGSDPSAHAEMVAI 67

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A +        G+T YVTLEPCS       CA  I+   + RVV    +P   +    
Sbjct: 68  RDAAKALDNYRLPGSTLYVTLEPCSM------CAGLIVHSRVARVVYGALEPKAGIVQSQ 121

Query: 116 LQWLSQK 122
            Q+ SQ 
Sbjct: 122 GQFFSQA 128


>gi|167464544|ref|ZP_02329633.1| possible nucleoside deaminase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 152

 Score = 95.3 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 22/151 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
            ++M  A+  +      T     +  +IV +G +IGRG            HAE+ A+ EA
Sbjct: 5   EQWMQEAISEALKAE--TIHEVPIGAVIVHEGRIIGRGHNLRETSMDPTAHAEMIAIREA 62

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            E  R       T YVTLEPC      P CA  I++  I RVV    DP    +G  +  
Sbjct: 63  SEYLRAWRLLNCTLYVTLEPC------PMCAGAIVQSRILRVVYGTIDPKAGCAGTLMNL 116

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTR 144
           L       +  +++ ++  E    L ++  +
Sbjct: 117 LQEDRFNHRVEVINGILREECSSLLTSFFRK 147


>gi|291545680|emb|CBL18788.1| Pyrimidine reductase, riboflavin biosynthesis [Ruminococcus sp.
           SR1/5]
          Length = 116

 Score = 95.3 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 14/114 (12%)

Query: 264 NINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
            +  IYC    D  DLKKL+T L  RG+ S+L+EGG  +  S + + +V  +  + +  +
Sbjct: 2   GVETIYCPDEKDQIDLKKLMTDLGNRGIDSILLEGGGTLNDSALRAGIVKEVQAFVAPKL 61

Query: 320 IGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCL-----EYIGKNLCLQE 363
            G     +P+E   +E     V   Y      G D+ +     E   +  CLQE
Sbjct: 62  FGGVAGKTPVEGIGVEFPSEAVELKYTDICQIGEDIRIRCQVCEKKQEESCLQE 115


>gi|259048082|ref|ZP_05738483.1| tRNA-specific adenosine deaminase [Granulicatella adiacens ATCC
           49175]
 gi|259035143|gb|EEW36398.1| tRNA-specific adenosine deaminase [Granulicatella adiacens ATCC
           49175]
          Length = 168

 Score = 95.3 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
             FM  AL+ ++           +  ++V +G +IGRG            HAE++A+ +A
Sbjct: 7   EFFMREALKEAQKA--YDQEEVPIGAVVVLNGEIIGRGHNLREKEQDATLHAEIKAIRQA 64

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            +            +VTLEPC      P C+  +I   +++VV    DP    +G  +  
Sbjct: 65  NQHLGSWRLEDCELFVTLEPC------PMCSGAMILARMKKVVFGAFDPKAGTAGTFMNL 118

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYL 142
           L       +  +   ++E E K  L  + 
Sbjct: 119 LQDSRFNHQVEVEQGILEDECKEILQQFF 147


>gi|218289065|ref|ZP_03493302.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218240890|gb|EED08068.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 156

 Score = 95.3 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 17/129 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M   + D RFM  AL  +            V  ++V++G ++G G     T   G  HAE
Sbjct: 1   MMEQAADERFMRRALELAEEAA--RWGEVPVGAVVVENGRIVGEGFNRRETWRDGTAHAE 58

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+EEA     G        YVTLEPC      P CA  I+   ++R+V    D     
Sbjct: 59  MLAIEEASRRLGGWRLTNCVLYVTLEPC------PMCAGAIVLSRVQRLVYGATDAKGGA 112

Query: 112 SGRGLQWLS 120
               ++ L 
Sbjct: 113 VASKVRLLE 121


>gi|312884996|ref|ZP_07744685.1| tRNA-specific adenosine deaminase [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367328|gb|EFP94891.1| tRNA-specific adenosine deaminase [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 156

 Score = 95.3 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 63/162 (38%), Gaps = 22/162 (13%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE- 65
           M  A+  +            V  L+VKDG +I  G       +    HAE++ L +AG+ 
Sbjct: 1   MRRAIELAHKAEQ--EGEVPVGALLVKDGEIIAEGWNRSISTHDATAHAEIEVLRKAGKI 58

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                    T YVTLEPC      P CA  ++   ++R+V    D     +G  L     
Sbjct: 59  LENYRLNDTTLYVTLEPC------PMCAGALLHSRVKRIVFGAFDKKTGAAGSVLNLFEH 112

Query: 122 KGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAV 158
           +       I   ++E + +  L ++  R+ E++     +   
Sbjct: 113 QAAYHYADIEKGVLEHQCRTQLQSFFKRRREEQREKKSQSKN 154


>gi|239825602|ref|YP_002948226.1| CMP/dCMP deaminase zinc-binding [Geobacillus sp. WCH70]
 gi|239805895|gb|ACS22960.1| CMP/dCMP deaminase zinc-binding [Geobacillus sp. WCH70]
          Length = 160

 Score = 95.3 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  +M  A+  ++    +      +  +IV+DG +I R      T      HAE+ A+++
Sbjct: 4   DEYYMRLAIEEAKKAEQI--GEVPIGAIIVQDGHIIARAHNLRETEQRAIAHAEILAIDK 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +         AT YVTLEPC+       CA  I+   I+RVV    DP    +G  + 
Sbjct: 62  ACKEVGSWRLEDATLYVTLEPCAM------CAGAIVLARIKRVVFGASDPKGGCAGTLMN 115

Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYLTR 144
            L       +  +   ++  E    L ++  +
Sbjct: 116 LLQEGRFNHQAEVTSGILGEECGQMLSSFFRK 147


>gi|134094605|ref|YP_001099680.1| tRNA-specific adenosine deaminase [Herminiimonas arsenicoxydans]
 gi|133738508|emb|CAL61553.1| tRNA-specific adenosine deaminase [Herminiimonas arsenicoxydans]
          Length = 170

 Score = 95.3 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 54/152 (35%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
           + D  +M  AL  +     L      V  ++VKDG VI  G     G      HAE+ AL
Sbjct: 9   TQDEIWMRQALDQAHNAWAL--GEVPVGAVVVKDGQVIATGFNQPIGTHDPTAHAEIMAL 66

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A          G   YVTLEPC        C+  ++   + RVV    DP     G  
Sbjct: 67  RAAATILGNYRLPGCELYVTLEPC------VMCSGAMMHARLARVVFGASDPKTGACGSI 120

Query: 116 LQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
           +       L+    +   +M  E    L  + 
Sbjct: 121 VNLFEQNQLNHHTQLTGGLMAQECGALLKDFF 152


>gi|239623044|ref|ZP_04666075.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522411|gb|EEQ62277.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 202

 Score = 95.3 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 22/152 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEE 62
           D  FM  A+R +     L      + C+IV+ G +I RG            HAE+ +++ 
Sbjct: 54  DEGFMGEAIRQAHKAAALGDV--PIGCVIVRQGQIIARGYNRRNADKSVLSHAEIISIKR 111

Query: 63  AGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++         T YVTLEPC      P C+  I++  I RVV+   +     +G  L 
Sbjct: 112 ACKKLGDWRLEDCTMYVTLEPC------PMCSGAIVQARIPRVVIGCMNAKAGCAGSVLD 165

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTR 144
            L + G          ++  E    +  +  +
Sbjct: 166 LLHEPGFNHQVDTRAGVLGEECSGMMKEFFRK 197


>gi|307153713|ref|YP_003889097.1| bifunctional deaminase-reductase domain-containing protein
           [Cyanothece sp. PCC 7822]
 gi|306983941|gb|ADN15822.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC
           7822]
          Length = 227

 Score = 95.0 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 83/227 (36%), Gaps = 21/227 (9%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA---- 202
            KR H  + +A++ D  I      +        KN +    AQ DA+L G GT+ A    
Sbjct: 1   MKRPHTLVVLAMTADGKIADKHSSAARFGSDADKNHLETQIAQVDAVLFGAGTLRAYHTS 60

Query: 203 ---DDPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
               +PEL   R    +   P+ I+      L+ + +  + +L  P  ++T +       
Sbjct: 61  FPISNPELLQWRKQQHKPPQPVHIVCSASGNLNPEMRFFRQSL--PRWLLTTHRGENTWQ 118

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVG-RGVTSLLVE-----GGAAVAHSFINSRLVDSII 312
               +    I     DL   +  L      T+L +E     GG  +  S + + L+D   
Sbjct: 119 QTNSEGFERI-LKADDLDNRINWLKAFEQFTTLGLEKLAILGGGGLVASLLEAALIDEFY 177

Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEYI 355
           L    +++G    P+P+E     +        +       ++ L Y 
Sbjct: 178 LTLCPLLLGGTDAPTPVEGLGFSQQQAQELELLSVKQIEGEIFLHYR 224


>gi|322383121|ref|ZP_08056948.1| tRNA specific adenosine deaminase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321152783|gb|EFX45409.1| tRNA specific adenosine deaminase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 157

 Score = 95.0 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 22/151 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
            ++M  A+  +      T     +  +IV +G +IGRG            HAE+ A+ EA
Sbjct: 10  EQWMQEAISEALKAE--TIHEVPIGAVIVHEGRIIGRGHNLRETSMDPTAHAEMIAIREA 67

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            E  R       T YVTLEPC      P CA  I++  I RVV    DP    +G  +  
Sbjct: 68  SEYLRAWRLLNCTLYVTLEPC------PMCAGAIVQSRILRVVYGTIDPKAGCAGTLMNL 121

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTR 144
           L       +  +++ ++  E    L ++  +
Sbjct: 122 LQEDRFNHRVEVINGILREECSSLLTSFFRK 152


>gi|15827698|ref|NP_301961.1| hypothetical protein ML1340 [Mycobacterium leprae TN]
 gi|221230175|ref|YP_002503591.1| hypothetical protein MLBr_01340 [Mycobacterium leprae Br4923]
 gi|2065234|emb|CAB08270.1| hypothetical protein MLC1351.23 [Mycobacterium leprae]
 gi|13093249|emb|CAC31721.1| possible reductase [Mycobacterium leprae]
 gi|219933282|emb|CAR71435.1| possible reductase [Mycobacterium leprae Br4923]
          Length = 268

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 72/203 (35%), Gaps = 15/203 (7%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD---PEL 207
            I      S D     A   +  + G   +   ++LR  +D I+VG GTV  ++     L
Sbjct: 50  WIRANFITSIDGG-ATADGRTGAMAGPGDRFVFNMLRELADVIVVGAGTVRIENYSGAHL 108

Query: 208 TC-----RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
                  R    Q   P   I+    +L  D  +     +AP+++        L      
Sbjct: 109 PVTKRQQRQARGQSEVPQLAIVTNSGRLDRDMAVFTRTEIAPLVLTCTETAKKLRTRLAD 168

Query: 263 KNINIIYCDCRDLKKL-----LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
               ++ C   D  K+     L  L  RG+  +L EGG  +  SFI   ++D + L  + 
Sbjct: 169 L-AYVVSCSGDDPSKVDETVVLATLQTRGLRRVLTEGGPMLLGSFIQHGMLDELCLTIAP 227

Query: 318 IVIGEGGIPSPLEEGYLEKNFMC 340
           +++G            L     C
Sbjct: 228 LIVGGRARRIATGPEQLLTRMRC 250


>gi|59711257|ref|YP_204033.1| tRNA-specific adenosine deaminase [Vibrio fischeri ES114]
 gi|59479358|gb|AAW85145.1| tRNA-specific adenosine deaminase [Vibrio fischeri ES114]
          Length = 171

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 61/156 (39%), Gaps = 23/156 (14%)

Query: 2   PVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
              S DA  +M  A+  +   +        V  +IV D  +IG G       +    HAE
Sbjct: 4   KQESRDASFYMQRAMELA--AIAEQEGEVPVGAVIVLDDEIIGEGWNRSISTHDATAHAE 61

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+++AG +        AT YVTLEPC      P CA  I+   I+RV+    D     
Sbjct: 62  MMAIKQAGSKIENYRLVDATLYVTLEPC------PMCAGAIVHSRIKRVIFGASDMKTGA 115

Query: 112 SGRGLQWLSQK-----GIIVDRMMESEGKIFLHAYL 142
           SG  +   +             +ME   +  L A+ 
Sbjct: 116 SGSVINLFTSATAFHFVECESGVMEEACRSQLQAFF 151


>gi|210623915|ref|ZP_03294124.1| hypothetical protein CLOHIR_02076 [Clostridium hiranonis DSM 13275]
 gi|210153279|gb|EEA84285.1| hypothetical protein CLOHIR_02076 [Clostridium hiranonis DSM 13275]
          Length = 371

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 22/154 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
           S D  FM  ALR ++       T   +  +IVKDG +IGRG            H+E+ A+
Sbjct: 224 SDDEYFMMEALREAKKAYDKEET--PIGAVIVKDGEIIGRGHNLTEHLKDATAHSEILAI 281

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV----DDPDVRV 111
           + A ++ +     G   YVT+EPC        C   I+   IR VV+      +    + 
Sbjct: 282 KNAAKKLKGWRLFGCKMYVTMEPC------VMCCGAIVNSRIREVVIGAKRVKNAKIEKQ 335

Query: 112 SGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTR 144
           S    ++     +     ++E E    L ++  R
Sbjct: 336 SDFKKEYFEDSKVEYKYGVLEEECAGMLGSFFKR 369


>gi|223983492|ref|ZP_03633678.1| hypothetical protein HOLDEFILI_00958 [Holdemania filiformis DSM
           12042]
 gi|223964664|gb|EEF68990.1| hypothetical protein HOLDEFILI_00958 [Holdemania filiformis DSM
           12042]
          Length = 181

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 50/132 (37%), Gaps = 17/132 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57
             S  D  FM  A++ +R    L      +  ++V DG ++ RG            HAE+
Sbjct: 5   SKSKNDEYFMRQAIKEARKAEALDEV--PIGAVLVHDGKILARGHNLREKKQSSLAHAEI 62

Query: 58  QALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+E+A              YVTLEPC      P CA  I++  I +VV    DP     
Sbjct: 63  VAIEKACRKTGSWRLEDCVLYVTLEPC------PMCAGAILQSRIAKVVYGAADPKGGSV 116

Query: 113 GRGLQWLSQKGI 124
           G         G 
Sbjct: 117 GTCFNLYDIPGF 128


>gi|251788710|ref|YP_003003431.1| CMP/dCMP deaminase zinc-binding [Dickeya zeae Ech1591]
 gi|247537331|gb|ACT05952.1| CMP/dCMP deaminase zinc-binding [Dickeya zeae Ech1591]
          Length = 168

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 64/167 (38%), Gaps = 22/167 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
           M     D  +M  AL  ++           V  ++V+ G VIG G     G      HAE
Sbjct: 1   MSSPMDDEFWMRHALSLAQRAW--DEGEVPVGAVLVQGGNVIGEGWNRPIGRHDPTAHAE 58

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL++ G+  +       T Y+TLEPC        CA  +I   I R+V    D     
Sbjct: 59  IMALQQGGQTLQNYRLLDTTLYITLEPC------VMCAGAMIHSRISRLVYGAADAKTGA 112

Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHIT 153
           +G  +  L   GI     I D ++  E    L  +   + +++    
Sbjct: 113 AGSLVDILRHPGINHHIMITDGVLADECAELLSRFFRMRRQQQRDAR 159


>gi|70727433|ref|YP_254349.1| hypothetical protein SH2434 [Staphylococcus haemolyticus JCSC1435]
 gi|68448159|dbj|BAE05743.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 157

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 59/152 (38%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
           + D  +M  A+  ++    L      +  +IVK+  VI        TA     HAE  A+
Sbjct: 2   ANDEYYMKLAIEEAKKAQKL--GEVPIGAIIVKNNEVIASAHNLRETAQLPTAHAEHIAI 59

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           E A +        G T YVTLEPC        CA  I+   I +VV    DP    SG  
Sbjct: 60  ERASKVLGSWRLEGCTLYVTLEPC------VMCAGAIVMSRIPKVVYGATDPKGGCSGSL 113

Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
           +  L       +  IV  ++E E    L  + 
Sbjct: 114 MNLLEESQFNHRAEIVKGVLEQECGDLLRNFF 145


>gi|152981408|ref|YP_001353698.1| hypothetical protein mma_2008 [Janthinobacterium sp. Marseille]
 gi|151281485|gb|ABR89895.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 159

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/125 (30%), Positives = 48/125 (38%), Gaps = 17/125 (13%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALE 61
            DA FM  AL  +R     T     V  ++VKDG VI  G     G      HAE+ AL 
Sbjct: 2   QDAIFMRQALDQARNAW--TLGEVPVGAVVVKDGEVIATGFNQPIGTHDPTAHAEIMALR 59

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A          G   +VTLEPC        C+  ++   + RVV    DP     G  +
Sbjct: 60  AAASILGNYRLPGCELFVTLEPC------VMCSGAMMHARLARVVFGAPDPKTGACGSVV 113

Query: 117 QWLSQ 121
               Q
Sbjct: 114 NLFEQ 118


>gi|329930226|ref|ZP_08283839.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Paenibacillus sp. HGF5]
 gi|328935248|gb|EGG31729.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Paenibacillus sp. HGF5]
          Length = 164

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 22/151 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
            R+M  A+  +R    L      +  +IV+   +IGRG     T Y G  HAE+ A+ EA
Sbjct: 17  ERWMREAIAEARKAEEL--GEVPIGAVIVRGDEIIGRGYNLRETTYDGTAHAEMVAIREA 74

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                         YVTLEPC      P CA  I++  + +++    DP    +G  +  
Sbjct: 75  SRHLGAWRLLDCRLYVTLEPC------PMCAGAIVQSRVPQLIYGTGDPKAGCAGTLMNL 128

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTR 144
           L       +  +VD +++ E    L  +  R
Sbjct: 129 LQEPRFNHRTHVVDGVLQEECASLLTQFFRR 159


>gi|303234521|ref|ZP_07321158.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Finegoldia magna BVS033A4]
 gi|302494355|gb|EFL54124.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Finegoldia magna BVS033A4]
          Length = 155

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 21/155 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
           + + D +FM  A+  +R  +        V C+IVK+G +I +      T      HAE++
Sbjct: 1   MENNDEKFMIKAIEQAR--IAFDLDEVPVGCVIVKNGEIIAQAYNSVETDNNATMHAELK 58

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+ +A +          T YVTLEPC        C   ++   I +VV    D      G
Sbjct: 59  AINQATQVIGNFRLDNCTMYVTLEPC------VMCTGALVYSRIPKVVFGAFDKKRGACG 112

Query: 114 RGLQWLSQKG----IIVDRMMESEGKIFLHAYLTR 144
             L     +G    I V  +ME E    + ++  R
Sbjct: 113 SLLSLNDYEGLNHKIEVKSIMEKECVELMQSFFRR 147


>gi|297561765|ref|YP_003680739.1| bifunctional deaminase-reductase domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296846213|gb|ADH68233.1| bifunctional deaminase-reductase domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 269

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 69/184 (37%), Gaps = 9/184 (4%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD--P 205
            R  +   +  S D         S  ++    +  +  LRA  D +LVG  T   +   P
Sbjct: 42  DRPWVRANMVASADGGAVGPSGRSRDLSSAPDRRIMGALRALCDVVLVGAATARVEGYGP 101

Query: 206 ELTCR----LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV--LALA 259
               R    L   +  +P   ++     L  D  + +    A  ++ T +  P       
Sbjct: 102 VRVRRAWEGLREGRARTPAVAVVSRSLDLPADL-LTEAPPHARTLVFTTSGAPRDRRREV 160

Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
             + ++ ++  D      ++  L  RG+  +L EGG  +   F+ + L+D + L  S  +
Sbjct: 161 AARADLVVVEGDSVAPAHIVDALAERGLYRVLTEGGPRLLAEFVAAGLLDELCLTLSPHL 220

Query: 320 IGEG 323
           +G G
Sbjct: 221 LGSG 224


>gi|227356250|ref|ZP_03840639.1| tRNA-specific adenosine deaminase [Proteus mirabilis ATCC 29906]
 gi|227163714|gb|EEI48630.1| tRNA-specific adenosine deaminase [Proteus mirabilis ATCC 29906]
          Length = 176

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 58/156 (37%), Gaps = 22/156 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           M     D  +M  A+  +     L      V  ++V D  +I +G            HAE
Sbjct: 1   MNKIKDDIYWMHKAIEQAHKAQQL--GEIPVGAVLVADNKIIAKGWNHSIIDNDPTAHAE 58

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL + G+  +      AT Y+TLEPC        CA  I+   ++RVV    D     
Sbjct: 59  IMALRKGGKHLQNYRLLDATLYITLEPC------VMCAGAIVHSRVKRVVYGASDLKTGA 112

Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
           +G  +  L   G+     I   ++  E    L  + 
Sbjct: 113 AGSFIDILQHPGMNHKVEITSGVLGEECAQLLSQFF 148


>gi|269126013|ref|YP_003299383.1| bifunctional deaminase-reductase domain-containing protein
           [Thermomonospora curvata DSM 43183]
 gi|268310971|gb|ACY97345.1| bifunctional deaminase-reductase domain protein [Thermomonospora
           curvata DSM 43183]
          Length = 229

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/212 (23%), Positives = 79/212 (37%), Gaps = 13/212 (6%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD--PELT 208
            +   +  S D    +    S  +     +     LRA +D ++VG GTV A+   P   
Sbjct: 23  WLRANMIASLDGAAWV-DGRSGGLGSPGDRRLFAALRAMADVVIVGAGTVRAEGYGP--- 78

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL-ALAFRKKNINI 267
            R  G Q  +P   I+     L LDS +        V++  +   P     A R   + +
Sbjct: 79  VR-PGPQGQAPPLAIVSRRLDLDLDSPVFTEPKARTVLLTVQAAPPERLRAAERVAEVIM 137

Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
              D  D  + +  L  RG   LL EGG AV        ++D + L  S +++   G PS
Sbjct: 138 AGEDGIDFSRAVRELAARGHRRLLCEGGPAVLARAAADGVLDELCLTLSPMLV--AGDPS 195

Query: 328 PLEEG-YLEKNFMCVRRDYFGSD--VCLEYIG 356
            +  G  L +         +  D  + L Y  
Sbjct: 196 RILAGPPLPRPLRMRPASVYEEDGFLFLRYRR 227


>gi|313900948|ref|ZP_07834438.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Clostridium sp. HGF2]
 gi|312954368|gb|EFR36046.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Clostridium sp. HGF2]
          Length = 151

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 60/149 (40%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
             +M AALR +     +      + C+IVKD  +I RG     T      HAE+ A+++A
Sbjct: 3   EEYMRAALREAEKAKKIDEV--PIGCVIVKDDKIIARGHNLRETKQQSINHAEIIAIQKA 60

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            ++           YVTLEPC        CA  I++  IR V+    DP        L  
Sbjct: 61  CKKVGSWRLEDCDLYVTLEPCCM------CAGAILQSRIRTVIYGTADPKGGSIESTLHM 114

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYL 142
             Q G      +   ++++E    L  + 
Sbjct: 115 YEQPGYNHYPKVESGVLQNECSQLLKNFF 143


>gi|228475284|ref|ZP_04060009.1| tRNA-specific adenosine deaminase [Staphylococcus hominis SK119]
 gi|228270749|gb|EEK12158.1| tRNA-specific adenosine deaminase [Staphylococcus hominis SK119]
          Length = 162

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 56/150 (37%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  +M  A+  ++    L      +  +IVKD  +I R      T      HAE  A+E 
Sbjct: 4   DEFYMKCAIEEAKKARQL--GEVPIGAVIVKDNDIISRAHNLRETLQQPTAHAEHLAIER 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +          T YVTLEPC        CA  ++   I RVV    DP    SG  + 
Sbjct: 62  AAKVIGSWRLEDCTLYVTLEPC------VMCAGTVVMSRIPRVVYGAMDPKGGCSGSLMD 115

Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYL 142
            L         I+   ++E E    L  + 
Sbjct: 116 LLQQPQFNHHAIVEQGVLEEECSNLLRQFF 145


>gi|221133296|ref|ZP_03559601.1| CMP/dCMP deaminase, zinc-binding protein [Glaciecola sp. HTCC2999]
          Length = 175

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 52/128 (40%), Gaps = 21/128 (16%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------TAYGGCPHAEVQ 58
             D  +M+ AL  +      T   P V  +IV D  +IG G           G  HAE+ 
Sbjct: 8   EQDELWMTHALSLADKAQ-QTGEVP-VGAVIVLDNQIIGEGYNRSIINHDPCG--HAEIM 63

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A++ A +         AT YVTLEPC+       CA  I+   ++RVV    D     +G
Sbjct: 64  AIQSAAQHINNYRILDATMYVTLEPCAM------CAGAIVHARMKRVVFGASDLKTGCAG 117

Query: 114 RGLQWLSQ 121
             L  L  
Sbjct: 118 SILNLLQH 125


>gi|169824845|ref|YP_001692456.1| putative deaminase [Finegoldia magna ATCC 29328]
 gi|167831650|dbj|BAG08566.1| putative deaminase [Finegoldia magna ATCC 29328]
          Length = 155

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 21/155 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
           + + D +FM  A+  +R  +        V C+IVK+G +I +      T      HAE++
Sbjct: 1   MENNDEKFMIKAIEQAR--IAFDMDEVPVGCVIVKNGEIIAQAYNSVETDNNATMHAELK 58

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+ +A +          T YVTLEPC        C   ++   I +VV    D      G
Sbjct: 59  AINQATQVIGNFRLDDCTMYVTLEPC------VMCTGALVYSRIPKVVFGAFDKKRGACG 112

Query: 114 RGLQWLSQKG----IIVDRMMESEGKIFLHAYLTR 144
             L     +G    I V  +ME E    + ++  R
Sbjct: 113 SLLSLNDYEGLNHKIEVKSIMEKECVELMQSFFRR 147


>gi|325479006|gb|EGC82107.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 169

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/125 (31%), Positives = 51/125 (40%), Gaps = 17/125 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEV 57
             S  D  FM  A+  +R    +      V  +IV  G +IGRG            HAE+
Sbjct: 11  NFSKMDMFFMQEAISEARLARFV--EEVPVGAVIVYKGEIIGRGHNYTYKGKSALKHAEI 68

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A++EA E          T YVT+EPCS       CA  II   I R+V+ + DP     
Sbjct: 69  MAIKEASEYMDDFRLEECTMYVTMEPCSM------CAGAIINSRIDRLVIGIRDPKRGAC 122

Query: 113 GRGLQ 117
           G    
Sbjct: 123 GSNTN 127


>gi|197335350|ref|YP_002155408.1| tRNA-specific adenosine deaminase [Vibrio fischeri MJ11]
 gi|197316840|gb|ACH66287.1| tRNA-specific adenosine deaminase [Vibrio fischeri MJ11]
          Length = 174

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 61/156 (39%), Gaps = 23/156 (14%)

Query: 2   PVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
              S DA  +M  A+  +   +        V  +IV D  +IG G       +    HAE
Sbjct: 4   KQESRDASFYMQRAMELA--AIAEQEGEVPVGAVIVLDDEIIGEGWNRSISTHDATAHAE 61

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+++AG +        AT YVTLEPC      P CA  I+   I+RV+    D     
Sbjct: 62  MMAIKQAGSKIENYRLVDATLYVTLEPC------PMCAGAIVHSRIKRVIFGASDMKTGA 115

Query: 112 SGRGLQWLSQK-----GIIVDRMMESEGKIFLHAYL 142
           SG  +   +             +ME   +  L A+ 
Sbjct: 116 SGSVINLFTSATAFHSVECESGVMEDACRSQLQAFF 151


>gi|302379537|ref|ZP_07268022.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Finegoldia magna ACS-171-V-Col3]
 gi|302312444|gb|EFK94440.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Finegoldia magna ACS-171-V-Col3]
          Length = 155

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 63/155 (40%), Gaps = 21/155 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
           + + D +FM  A+  ++  +        V C+IVK+G +I +      T      HAE++
Sbjct: 1   MENNDEKFMIKAIEQAK--IAFDLDEVPVGCVIVKNGEIIAQAYNSVETDNNATMHAELK 58

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+ +A +          T YVTLEPC        C   ++   I +VV    D      G
Sbjct: 59  AINQATKVIGNFRLDDCTMYVTLEPC------VMCTGALVYSRIPKVVFGAFDKKRGACG 112

Query: 114 RGLQWLSQKG----IIVDRMMESEGKIFLHAYLTR 144
             +     +G    I V  +ME E    + ++  R
Sbjct: 113 SLISLNDYEGLNHKIEVKSIMEKECVELMQSFFRR 147


>gi|146293740|ref|YP_001184164.1| CMP/dCMP deaminase, zinc-binding [Shewanella putrefaciens CN-32]
 gi|145565430|gb|ABP76365.1| tRNA-adenosine deaminase [Shewanella putrefaciens CN-32]
          Length = 164

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 56/153 (36%), Gaps = 22/153 (14%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
            D  +M  A++ +       +    V  ++VKDG  I  G       +    HAE+  L 
Sbjct: 1   MDEYWMQVAMQMAEKAE--AAGEVPVGAVLVKDGQQIATGYNLSISQHDPTAHAEILCLR 58

Query: 62  EAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            AG++        AT Y+TLEPC+       CA  ++   I RVV    D     +G  +
Sbjct: 59  SAGKKLENYRLLDATLYITLEPCAM------CAGAMVHSRIARVVYGARDEKTGAAGTVV 112

Query: 117 QWLSQKGI-----IVDRMMESEGKIFLHAYLTR 144
             L          +   ++       L  +  R
Sbjct: 113 NLLQHPAFNHQVEVTSGVLAEACSAQLSRFFKR 145


>gi|170723352|ref|YP_001751040.1| CMP/dCMP deaminase zinc-binding [Pseudomonas putida W619]
 gi|169761355|gb|ACA74671.1| CMP/dCMP deaminase zinc-binding [Pseudomonas putida W619]
          Length = 159

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 61/152 (40%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
           S D  FM  AL  +     L      V  ++V+ G VIG+G            HAE+ A+
Sbjct: 9   SRDQEFMRMALDLAAQGAAL--GEVPVGAVLVQHGQVIGQGFNRPIIDSDPSAHAEMVAI 66

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A + A      G+T YVTLEPCS       CA  I+   + RVV    +P   +    
Sbjct: 67  RAAAKSASNYRLPGSTLYVTLEPCSM------CAGLIVHSRVARVVYGALEPKAGIVQSQ 120

Query: 116 LQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
            Q     +L+ + +    ++  E    L  + 
Sbjct: 121 GQFFSQGFLNHRVMFEGGVLAEECGAILSEFF 152


>gi|262202204|ref|YP_003273412.1| bifunctional deaminase-reductase domain-containing protein
           [Gordonia bronchialis DSM 43247]
 gi|262085551|gb|ACY21519.1| bifunctional deaminase-reductase domain protein [Gordonia
           bronchialis DSM 43247]
          Length = 263

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 77/232 (33%), Gaps = 19/232 (8%)

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
             ++   +     +     R ++      S D  +      S  + G       H+LRA 
Sbjct: 22  WLAQTYAYPPKPTSPPCLTRPYVRANFVSSIDGAV-THNGRSAELAGPGDHALFHVLRAL 80

Query: 190 SDAILVGIGTVLADD-------PELTC-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           +D +LVG  T   +D       P     R    Q  +P   ++       +    +    
Sbjct: 81  ADVVLVGARTATVEDYGQPAEYPVFAGDRRRAEQTPAPALALVSRTLAFPIGYPPLGNPD 140

Query: 242 LAPVIIVTENDDPVL-ALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAV 298
               ++ T  D P     +       +I C  D  DL  +L     RG   +L EGG  +
Sbjct: 141 ---TVVFTCRDAPRENRQSLVDAGATLIDCGEDTVDLPIVLDRCAERGWHRVLCEGGPTL 197

Query: 299 AHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
             S +   LVD + L  S  ++ G+ G    +           +R +   +D
Sbjct: 198 LGSLVTEDLVDEMCLTISPNLVSGDAGR---IAHDRRPGVLRSMRAETILTD 246


>gi|160947058|ref|ZP_02094225.1| hypothetical protein PEPMIC_00989 [Parvimonas micra ATCC 33270]
 gi|158446192|gb|EDP23187.1| hypothetical protein PEPMIC_00989 [Parvimonas micra ATCC 33270]
          Length = 155

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
           S D  FM  AL+ ++           + C+IVKD  ++ RG         G  HAE+ A+
Sbjct: 2   SRDEYFMDIALKEAKKAYN--KGEVPIGCVIVKDDKIVSRGHNQVLSKKSGVNHAEIIAI 59

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR- 114
            +AG++           +VTLEPC        CA  I+   I+RV++   D      G  
Sbjct: 60  NKAGQKLGDFRLEDTELFVTLEPCCM------CAGAIVNSRIKRVIIGAMDVKRGFCGSI 113

Query: 115 ----GLQWLSQKGIIVDRMMESEGKIFLHAYL 142
                 Q L+ + II   ++E +    L  + 
Sbjct: 114 ENVLDRQELNHRSIIKTGVLEQKCLDILQDFF 145


>gi|172056061|ref|YP_001812521.1| CMP/dCMP deaminase zinc-binding [Exiguobacterium sibiricum 255-15]
 gi|171988582|gb|ACB59504.1| CMP/dCMP deaminase zinc-binding [Exiguobacterium sibiricum 255-15]
          Length = 169

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 57/154 (37%), Gaps = 22/154 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           +      +M  A+  ++    +      + C+IVK   VI  G            HAE+ 
Sbjct: 1   MMERHEHYMRLAIEEAKKAKAI--GEVPIGCVIVKGDEVIATGYNHRETNHQATAHAELL 58

Query: 59  ALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+EEA  +       G   YVTLEPC      P CA  I+   I  V+    DP     G
Sbjct: 59  AIEEACNKLANWRLEGCELYVTLEPC------PMCAGAIMLSRIEHVIFGAVDPKGGCCG 112

Query: 114 RGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
             +  +  +       +   ++E E    L ++ 
Sbjct: 113 TLMNLVQDERFNHVSQLTGGVLEQECGEMLTSFF 146


>gi|264677875|ref|YP_003277782.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
           CNB-2]
 gi|262208388|gb|ACY32486.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
           CNB-2]
          Length = 457

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 57/150 (38%), Gaps = 22/150 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
             FM  AL  +R           V  ++VKDG VIGRG      A     HAEV AL EA
Sbjct: 9   EHFMRQALEQARRAAAC--GEVPVGAVVVKDGQVIGRGHNSPLSAQDPTAHAEVLALREA 66

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                     G T YVTLEPC        C+  ++   +  VV    +P    +G  L  
Sbjct: 67  ARTLGNYRLEGCTLYVTLEPC------TMCSGAMLHARVDAVVYGAAEPRTGAAGSVLDV 120

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYLT 143
                I     ++  ++ ++    +  +  
Sbjct: 121 FGYPAINHQTRVLRGVLAAQCSALMAEFFQ 150


>gi|330944974|gb|EGH46766.1| riboflavin biosynthesis protein RibD:riboflavin-specific deaminase
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 138

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 48/128 (37%), Gaps = 9/128 (7%)

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVG 284
            +L  D+   +       ++VT            + +  +   D     DL++L+  L  
Sbjct: 1   LRLPFDAPFFQAGSA---LVVTCAAASARGRYQEEGHEMLALADSAGHVDLRRLMGELAA 57

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCV 341
           RGV  +LVE G  +A +F    LVD   L+ +   +G    P    PL +         V
Sbjct: 58  RGVNEVLVEAGPRLAGAFARLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIV 117

Query: 342 RRDYFGSD 349
                G+D
Sbjct: 118 EMRAVGND 125


>gi|120598186|ref|YP_962760.1| CMP/dCMP deaminase, zinc-binding [Shewanella sp. W3-18-1]
 gi|120558279|gb|ABM24206.1| tRNA-adenosine deaminase [Shewanella sp. W3-18-1]
          Length = 164

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 56/153 (36%), Gaps = 22/153 (14%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
            D  +M  A++ +       +    V  ++VKDG  I  G       +    HAE+  L 
Sbjct: 1   MDEYWMQVAMQMAEKAE--AAGEVPVGAVLVKDGQQIATGYNLSISQHDPSAHAEILCLR 58

Query: 62  EAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            AG++        AT Y+TLEPC+       CA  ++   I RVV    D     +G  +
Sbjct: 59  SAGKKLENYRLLDATLYITLEPCAM------CAGAMVHSRIARVVYGARDEKTGAAGTVV 112

Query: 117 QWLSQKGI-----IVDRMMESEGKIFLHAYLTR 144
             L          +   ++       L  +  R
Sbjct: 113 NLLQHPAFNHQVEVTSGVLAEACSAQLSRFFKR 145


>gi|261403958|ref|YP_003240199.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus sp.
           Y412MC10]
 gi|261280421|gb|ACX62392.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus sp.
           Y412MC10]
          Length = 164

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 22/151 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
            R+M  A+  +R    L      +  +IV+   +IGRG     T Y G  HAE+ A+ EA
Sbjct: 17  ERWMREAIAEARKAEEL--GEVPIGAVIVRGDEIIGRGYNLRETTYDGTAHAEMVAIREA 74

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                         YVTLEPC      P CA  I++  + +++    DP    +G  +  
Sbjct: 75  SRHLGAWRLLDCRLYVTLEPC------PMCAGAIVQSRVPQLIYGTGDPKAGCAGTLMNL 128

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTR 144
           L       +  +VD +++ E    L  +  R
Sbjct: 129 LQEPRFNHRTHVVDGVLQEECASLLTQFFRR 159


>gi|271501609|ref|YP_003334635.1| CMP/dCMP deaminase zinc-binding protein [Dickeya dadantii Ech586]
 gi|270345164|gb|ACZ77929.1| CMP/dCMP deaminase zinc-binding protein [Dickeya dadantii Ech586]
          Length = 170

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 65/176 (36%), Gaps = 22/176 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
           M     D  +M  AL  ++           V  ++V+   VIG G     G      HAE
Sbjct: 1   MSSPMDDEFWMRHALSLAQRAW--DEGEVPVGAVLVQGDRVIGEGWNRPIGRHDPTAHAE 58

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL++ G+  +       T Y+TLEPC        CA  +I   I R+V    D     
Sbjct: 59  IMALQQGGQVLQNYRLLDTTLYITLEPC------VMCAGAMIHSRITRLVYGAADAKTGA 112

Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           +G  +  L   G+     I D ++  E    L  +   + +++         S D 
Sbjct: 113 AGSLVDILRHPGMNHQIAITDGVLAQECSELLSRFFRMRRQQQREARAGRDTSHDT 168


>gi|297587228|ref|ZP_06945873.1| tRNA-specific adenosine deaminase [Finegoldia magna ATCC 53516]
 gi|297575209|gb|EFH93928.1| tRNA-specific adenosine deaminase [Finegoldia magna ATCC 53516]
          Length = 155

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 21/162 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
           + + D +FM  A+  ++  +        V C+IVKDG +I +   +         HAE++
Sbjct: 1   MENNDEKFMMKAIEQAK--IAYDMDEVPVGCVIVKDGEIIAQAYNSVEKDKNATMHAELK 58

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+ +A E            YVTLEPC        C   ++   I +VV    D      G
Sbjct: 59  AINQATEFIGNFRLDDCIMYVTLEPC------VMCTGALVYSRIPKVVFGAFDKKRGACG 112

Query: 114 RGLQWLSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSH 151
             +     +G    I V  +ME E    + ++  R  EK  +
Sbjct: 113 SLISLNDYEGLNHKIEVKSIMEKECVELMQSFFRRIREKNRN 154


>gi|313156981|gb|EFR56413.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Alistipes sp. HGB5]
          Length = 358

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 73/184 (39%), Gaps = 14/184 (7%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             ITL  AV+ D  +       + I+      +V+ LRA  DAILVG  T+  DDP L  
Sbjct: 1   MRITLSAAVTADGFLDDNSPRRLIISTPEDWAEVYRLRAAHDAILVGAETLRRDDPSLLV 60

Query: 210 RLNGLQEH------SP--MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
           R   ++         P   +  L    +LS   +          +       P    + +
Sbjct: 61  RDEEVRARRREQGLPPDIAKATLTGTGELSPGLRFFTEGEAERYVF-----SPHEIDSLQ 115

Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV-I 320
                I        K ++T L  RGV  L+VEGGAAV   F+   + D++ L  +  + +
Sbjct: 116 NIATVISTEGPITAKLIVTQLEKRGVERLMVEGGAAVLRMFLGEGMADTLRLAVNPQLRL 175

Query: 321 GEGG 324
           G  G
Sbjct: 176 GAAG 179



 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 6/126 (4%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62
           S+ D RF+  A+   R     ++T+  V  ++V  DG +            HAE +A+ +
Sbjct: 213 SAADLRFLKQAVDEGRK-CTPSATSYCVGAVVVAADGRIFAGHTHETSPTHHAEQEAIAK 271

Query: 63  AGEE---ARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           A       RGA  Y ++EPCS     P  C Q +++ G  R V  + +PD  V  RG   
Sbjct: 272 ALAAGAPLRGAAMYSSMEPCSQRASEPESCTQLLLKYGFARAVFALYEPDCFVCCRGALT 331

Query: 119 LSQKGI 124
           L + G+
Sbjct: 332 LREAGV 337


>gi|157371891|ref|YP_001479880.1| CMP/dCMP deaminase zinc-binding [Serratia proteamaculans 568]
 gi|157323655|gb|ABV42752.1| CMP/dCMP deaminase zinc-binding [Serratia proteamaculans 568]
          Length = 170

 Score = 93.8 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 65/171 (38%), Gaps = 22/171 (12%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M  ALR +            V  L+V D  VIG G     G      HAE+ AL +
Sbjct: 6   DEYWMRQALRLALRAQ--EEGEVPVGALLVLDNQVIGEGWNRPIGRHDPTAHAEIMALRQ 63

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            G   +      AT YVTLEPC        CA  ++   IRR+V    D     +G  + 
Sbjct: 64  GGAVLQNYRLLNATLYVTLEPC------VMCAGAMVHSRIRRLVYGAADVKTGAAGSLVD 117

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163
            L   G+     I+  ++  E    L  +   + E++  +        DN 
Sbjct: 118 ILRHPGMNHQVEILSGVLAEECAATLSNFFRMRREQQKALKQAQRTDVDNK 168


>gi|312142718|ref|YP_003994164.1| CMP/dCMP deaminase zinc-binding protein [Halanaerobium sp.
           'sapolanicus']
 gi|311903369|gb|ADQ13810.1| CMP/dCMP deaminase zinc-binding protein [Halanaerobium sp.
           'sapolanicus']
          Length = 149

 Score = 93.8 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
           +FD ++M  AL  +R           +  ++V D  V+GRG            HAE+ AL
Sbjct: 2   NFDQKYMQMALAEARKAYQRAEV--PIGAVVVCDDRVVGRGFNLREQTQDPTSHAEIIAL 59

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA +            YVTLEPC      P CA  I++  I+R+V    DP        
Sbjct: 60  KEAAKEQASWRLEDCQLYVTLEPC------PMCAGAILQSRIKRLVYAAADPKAGAVKSL 113

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
            Q L     + +  +V  +ME+E    L  + 
Sbjct: 114 YQLLGDDRFNHQVEVVSGVMEAEAAQLLKDFF 145


>gi|293570161|ref|ZP_06681239.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1071]
 gi|291587310|gb|EFF19196.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1071]
          Length = 171

 Score = 93.8 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 26/160 (16%)

Query: 1   MPVSSFD----ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGC 52
           M  ++ D     ++M  AL  ++    L      +  ++V DG VIGRG     T     
Sbjct: 1   MVNTNLDTVEKEKWMRLALAEAKKAEMLHEV--PIGAVVVLDGKVIGRGYNLRETTQDAT 58

Query: 53  PHAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
            HAE+ A++EA E+        A  +VTLEPC      P C+  +I   +  V     DP
Sbjct: 59  THAEMLAIKEACEKVGSWRLEDAALFVTLEPC------PMCSGAMILSRVAEVYFGAYDP 112

Query: 108 DVRVSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
               +G  +  L       +  +   ++E E  + L  + 
Sbjct: 113 KGGTAGTLMNLLEDERFNHQAYVEGGILEDECGMILTDFF 152


>gi|229545278|ref|ZP_04434003.1| nucleoside deaminase [Enterococcus faecalis TX1322]
 gi|229309628|gb|EEN75615.1| nucleoside deaminase [Enterococcus faecalis TX1322]
          Length = 173

 Score = 93.8 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 22/151 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
             FM  A+  ++   GL      +  +IV+ G +IGRG            HAE+ A++EA
Sbjct: 14  EFFMREAIAEAKKAEGLAEV--PIGAVIVRQGEIIGRGHNLREARQEATAHAEMYAIQEA 71

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                         +VTLEPC      P C+  ++   I  V     DP    +G  +  
Sbjct: 72  CRGIENWRLEETQLFVTLEPC------PMCSGAMLLARIPEVYYGATDPKAGTAGTLMNL 125

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTR 144
           L          +   ++E E ++ L  +  R
Sbjct: 126 LEDERFNHVAYVEAGVLEEECRLLLVQFFKR 156


>gi|6572098|emb|CAB63082.1| riboflavin-specific deaminase [Bartonella bacilliformis]
          Length = 107

 Score = 93.8 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
              +L +L   G+ S+L+EGGA     F+N+  VD +I + + +++GE  I +P  E YL
Sbjct: 19  PLAILQLLCQLGINSVLLEGGAETGEKFLNAGCVDHLICFYASVILGENRIKAPYFETYL 78

Query: 335 EKNFMCVRRDYFGSDVCLEYIGKNLCLQEL 364
            + F  +      +D    +  K LC Q L
Sbjct: 79  SE-FNEIETKMLENDRLRRWRRKILCSQGL 107


>gi|297616226|ref|YP_003701385.1| CMP/dCMP deaminase zinc-binding protein [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144063|gb|ADI00820.1| CMP/dCMP deaminase zinc-binding protein [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 155

 Score = 93.8 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 64/160 (40%), Gaps = 26/160 (16%)

Query: 1   MPVSSFDARFMSAALRF--SRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
           M +   D  FM  A+    + +H G       V  ++VK+G +I               H
Sbjct: 1   MTLFLHDEDFMRRAVELGWAAFHQGEV----PVGAVVVKNGEIISSAHNEKEKRQDATAH 56

Query: 55  AEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AE+ A++ A +       +  T Y T+EPC      P CA  I++  I++VV    D   
Sbjct: 57  AEMLAIQRASQALGTWRLQDTTLYSTIEPC------PMCAGAIVQARIKKVVFGARDLKA 110

Query: 110 RVSGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLTR 144
              G  +       L+ +  +++ ++E E    +  +  R
Sbjct: 111 GAGGSLINVLDFPGLNHRVEVIEGVLEDECTELMTEFFRR 150


>gi|169830233|ref|YP_001716215.1| CMP/dCMP deaminase [Candidatus Desulforudis audaxviator MP104C]
 gi|169637077|gb|ACA58583.1| CMP/dCMP deaminase, zinc-binding [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 156

 Score = 93.8 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 22/155 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57
           P  +  A +M  ALR +            V  ++V+DG +IGRG            HAE+
Sbjct: 5   PDLAVHAGYMREALREAEKA--YAKGEVPVGAVVVQDGTIIGRGHNLREADNDASAHAEL 62

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+ +A +        GAT YVT+EPC      P CA  +++  +RRVV    DP    +
Sbjct: 63  LAMRQAAQVSGDWRLSGATVYVTMEPC------PMCAGALVQFRVRRVVYGTADPKAGAA 116

Query: 113 GRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
           G  ++ L       +  ++  ++E+E +  +  + 
Sbjct: 117 GSVVELLREPRFNHQVEVIPGVLEAECREIVQRFF 151


>gi|312139475|ref|YP_004006811.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase ribd [Rhodococcus
           equi 103S]
 gi|325672635|ref|ZP_08152331.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodococcus equi
           ATCC 33707]
 gi|311888814|emb|CBH48126.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
           [Rhodococcus equi 103S]
 gi|325556512|gb|EGD26178.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodococcus equi
           ATCC 33707]
          Length = 262

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 79/223 (35%), Gaps = 18/223 (8%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV------- 200
            R  I      S D  +      S  +     K    +LR  +D ++VG GTV       
Sbjct: 43  DRPWIRTNFVSSIDGAV-TVDGVSAGLGTPADKRVFAVLRELADVVVVGAGTVRSENYGG 101

Query: 201 -LADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
              D      R  +GL    P+ ++     +L   S++     + P+++ +   D     
Sbjct: 102 ARTDADSAARRERSGLAAVPPIAVVTAS-ARLDPASRLFTDTTVPPLVLTSAAADASRVQ 160

Query: 259 AFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
             R    ++     R++    ++  L  RG+  +L EGG  +  + I   +VD + L  S
Sbjct: 161 RLRDAGADVEIVAEREIGGTDVVAALGLRGLRRVLCEGGPGLFGTLIADGVVDELCLTTS 220

Query: 317 QIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD---VCLEYIG 356
            +++G  G    +    +       R      D   +   ++ 
Sbjct: 221 PVLVG--GAAGRIAHSSIASPTAMSRAHVLADDDGTLLTRWVR 261


>gi|325928669|ref|ZP_08189845.1| tRNA-adenosine deaminase [Xanthomonas perforans 91-118]
 gi|325540965|gb|EGD12531.1| tRNA-adenosine deaminase [Xanthomonas perforans 91-118]
          Length = 171

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 65/164 (39%), Gaps = 22/164 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHAE 56
           P ++ D  +M  AL+ +          P V  L+V   G V+G G      ++    HAE
Sbjct: 12  PYAAIDEHWMRHALQLAERAERDYDEIP-VGALLVDAQGNVLGEGWNFNIASHDPSAHAE 70

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ EAG         G T YVTLEPC+       CA  +I   I RVV    DP    
Sbjct: 71  IVAMREAGRRLANHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGA 124

Query: 112 SGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
            G     L+      +  +   ++ +E  + L  Y   +  K  
Sbjct: 125 CGSVFDLLADPRHNHRVQVCGGVLAAEASLRLTNYFRAKRGKPP 168


>gi|56478507|ref|YP_160096.1| cytosine/adenosine deaminase [Aromatoleum aromaticum EbN1]
 gi|56314550|emb|CAI09195.1| probable cytosine/adenosine deaminases [Aromatoleum aromaticum
           EbN1]
          Length = 154

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 63/150 (42%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
           D  FM AAL  +R   G     P V  ++V DG ++GRG       +    HAEV AL +
Sbjct: 3   DEDFMRAALEQARMA-GACDEVP-VGAVVVLDGEIVGRGFNQPIRRHDPSAHAEVMALRD 60

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AGE        G   +VTLEPC+       C+  I+   + RVV    DP   V+G  + 
Sbjct: 61  AGERLGNYRFPGCELFVTLEPCAM------CSGAIMHARVARVVFGARDPRTGVAGSIID 114

Query: 118 W-----LSQKGIIVDRMMESEGKIFLHAYL 142
                 L+    +   ++  E    L  + 
Sbjct: 115 LFAERRLNHHAEVAGGVLADECGRLLSGFF 144


>gi|238784197|ref|ZP_04628210.1| tRNA-specific adenosine deaminase [Yersinia bercovieri ATCC 43970]
 gi|238714906|gb|EEQ06905.1| tRNA-specific adenosine deaminase [Yersinia bercovieri ATCC 43970]
          Length = 181

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 66/170 (38%), Gaps = 22/170 (12%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
           D  +M  AL  +            V  ++V D  VIG G            HAE+ AL +
Sbjct: 19  DEYWMQRALMLALRAQ--EEGEVPVGAVLVLDNQVIGEGWNRSICDSDPTAHAEIMALRQ 76

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            G+  +      AT YVTLEPC        CA  ++   IRR+V   +D     +G  L 
Sbjct: 77  GGQVVQNYRLLDATLYVTLEPC------VMCAGAMVHSRIRRLVYGANDLKTGAAGSLLD 130

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            L   G+     I   ++       L A+  ++  ++  + + +  S D 
Sbjct: 131 ILRHPGMNHQVEISAGVLAEACSQQLSAFFRQRRAQQKALRVALRASVDK 180


>gi|254490420|ref|ZP_05103607.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Methylophaga thiooxidans DMS010]
 gi|224464386|gb|EEF80648.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Methylophaga thiooxydans DMS010]
          Length = 149

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 17/124 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
           S + R+M  AL  ++           V  +IV +  +IG G            HAE+ AL
Sbjct: 2   SDEIRWMQRALALAQRAE--AEGEVPVGAVIVLNNEIIGEGWNQPISANDATAHAEIIAL 59

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A +        GA  Y+TLEPC+       CA  ++   I +VV    +P    +G  
Sbjct: 60  RQACQLMNNYRLPGADMYITLEPCAM------CAGALVHARINKVVYATAEPKTGAAGSC 113

Query: 116 LQWL 119
           +   
Sbjct: 114 VDIF 117


>gi|308066929|ref|YP_003868534.1| hypothetical protein PPE_00098 [Paenibacillus polymyxa E681]
 gi|305856208|gb|ADM67996.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 163

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
           A +M  A++ +     L      +  +IVKD  +IGRG     T      HAE+ A+ +A
Sbjct: 4   AYWMKEAIQEAYKAEAL--GEVPIGAVIVKDNEIIGRGYNLRETDADPTAHAEMVAIRQA 61

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            E            YVTLEPC      P CA  I++  +  ++    DP    +G  +  
Sbjct: 62  SEHLGAWRLLDCRLYVTLEPC------PMCAGAIVQSRVPHLIYGTTDPKAGCAGTLMNL 115

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYL 142
           L          +   +++ E    L ++ 
Sbjct: 116 LQEPRFNHCTEVNSGVLQEECASLLTSFF 144


>gi|300860777|ref|ZP_07106864.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TUSoD Ef11]
 gi|300849816|gb|EFK77566.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TUSoD Ef11]
 gi|315146059|gb|EFT90075.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX2141]
          Length = 173

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 22/151 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
             FM  A+  ++   GL      +  +IV+ G +IGRG            HAE+ A++EA
Sbjct: 14  EFFMREAIAEAKKAEGLAEV--PIGAVIVRQGEIIGRGHNLREARQEATAHAEMYAIQEA 71

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                         +VTLEPC      P C+  ++   I  V     DP    +G  +  
Sbjct: 72  CRGIENWRLEETQLFVTLEPC------PMCSGAMLLARIPEVYYGATDPKAGTAGTLMNL 125

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTR 144
           L          +   ++E E ++ L  +  +
Sbjct: 126 LEDERFNHVAYVEAGVLEEECRLLLVQFFKK 156


>gi|294102217|ref|YP_003554075.1| CMP/dCMP deaminase zinc-binding protein [Aminobacterium colombiense
           DSM 12261]
 gi|293617197|gb|ADE57351.1| CMP/dCMP deaminase zinc-binding protein [Aminobacterium colombiense
           DSM 12261]
          Length = 156

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/160 (28%), Positives = 68/160 (42%), Gaps = 20/160 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCPHAEVQ 58
           M  S  D  FM+ AL  +R           VA L+V++  VIG+G  +       HAE+ 
Sbjct: 1   MIHSDTDIFFMNMALDEARKAA--EHGEVPVAALVVRNNEVIGKGSNSKHLDPTAHAEII 58

Query: 59  ALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+ EA E       RG+T YVTLEPC      P CA  I+   I+ +V    DP     G
Sbjct: 59  AIREATERLGTWNLRGSTLYVTLEPC------PMCAGAIVLSRIKCLVYGAADPRAGACG 112

Query: 114 RGLQW-----LSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
                     L+ +  ++  ++  E    L  Y  ++ + 
Sbjct: 113 TLYNIVQDSRLNHRCEVIKGVLAQESANLLWDYFKKRRQN 152


>gi|229917437|ref|YP_002886083.1| CMP/dCMP deaminase zinc-binding [Exiguobacterium sp. AT1b]
 gi|229468866|gb|ACQ70638.1| CMP/dCMP deaminase zinc-binding [Exiguobacterium sp. AT1b]
          Length = 166

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 58/152 (38%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D RFM  A+  ++    +      + C+IVK   VI  G     T      HAE+ A+
Sbjct: 2   ERDERFMQLAIEEAKKAEAI--GEVPIGCVIVKGDQVIATGHNRRETDRLAAAHAEMIAI 59

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           E A E            YVTLEPC      P CA  I+   ++RV+    DP     G  
Sbjct: 60  ETANETLGNWRLEDCELYVTLEPC------PMCAGAIVLSRVKRVIFGAHDPKGGCCGTL 113

Query: 116 LQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
           +        + +  + + ++  E    L  + 
Sbjct: 114 MNLVQDERFNHQAEVTENVLAEECGQLLTDFF 145


>gi|146308436|ref|YP_001188901.1| CMP/dCMP deaminase, zinc-binding [Pseudomonas mendocina ymp]
 gi|145576637|gb|ABP86169.1| CMP/dCMP deaminase, zinc-binding protein [Pseudomonas mendocina
           ymp]
          Length = 158

 Score = 93.4 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
           S D  FM  AL  +R  +G       V  ++V+DG V+G+G       +    HAE+ A+
Sbjct: 10  SRDEHFMRLALVQAR--LGAEQGEVPVGAVLVQDGEVVGQGFNCPILRHDPSAHAEMVAI 67

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A +  +     G+T YVTLEPCS       CA  I+   I RVV    +P   V+   
Sbjct: 68  RAAAQSVQNYRLPGSTLYVTLEPCSM------CAGLIVHARIARVVYAASEPRAGVAISQ 121

Query: 116 LQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
            Q     +L+ + ++   ++  E    L  + 
Sbjct: 122 GQFFDQGFLNHRVLVEGGLLAEESGALLKDFF 153


>gi|229513031|ref|ZP_04402497.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae TMA 21]
 gi|254285542|ref|ZP_04960506.1| zinc-binding domain protein [Vibrio cholerae AM-19226]
 gi|150424404|gb|EDN16341.1| zinc-binding domain protein [Vibrio cholerae AM-19226]
 gi|229349924|gb|EEO14878.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae TMA 21]
          Length = 193

 Score = 93.4 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 22/176 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
            S+ D +FM      +            V  ++V+DG +I  G     T +    HAE++
Sbjct: 24  FSAQDEQFMRR--AIALAAQAEAQGEVPVGAVLVRDGEIIAEGWNGSITNHDATAHAEIE 81

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            + +AG+          T YVTLEPC      P CA  ++   ++R+V    D     +G
Sbjct: 82  VIRKAGKALSNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAG 135

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164
             +   S         +   ++E E +  L A+  R+ ++            +   
Sbjct: 136 TVMDLFSSQAAYHYATVEKGLLEEECRAQLQAFFQRRRKEIKAKRDAERNDAERKN 191


>gi|69245245|ref|ZP_00603323.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
           [Enterococcus faecium DO]
 gi|257880130|ref|ZP_05659783.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,230,933]
 gi|257882362|ref|ZP_05662015.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,502]
 gi|257885559|ref|ZP_05665212.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,501]
 gi|257891221|ref|ZP_05670874.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,410]
 gi|257894033|ref|ZP_05673686.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,408]
 gi|258614535|ref|ZP_05712305.1| cytidine/deoxycytidylate deaminase family protein [Enterococcus
           faecium DO]
 gi|260560261|ref|ZP_05832437.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium C68]
 gi|293560645|ref|ZP_06677132.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1162]
 gi|294617818|ref|ZP_06697430.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1679]
 gi|294621156|ref|ZP_06700343.1| tRNA-specific adenosine deaminase [Enterococcus faecium U0317]
 gi|314938786|ref|ZP_07846059.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecium TX0133a04]
 gi|314941552|ref|ZP_07848438.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecium TX0133C]
 gi|314947607|ref|ZP_07851016.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecium TX0082]
 gi|314951363|ref|ZP_07854416.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecium TX0133A]
 gi|314993109|ref|ZP_07858496.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecium TX0133B]
 gi|314996760|ref|ZP_07861775.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecium TX0133a01]
 gi|68195920|gb|EAN10354.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
           [Enterococcus faecium DO]
 gi|257814358|gb|EEV43116.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,230,933]
 gi|257818020|gb|EEV45348.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,502]
 gi|257821415|gb|EEV48545.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,501]
 gi|257827581|gb|EEV54207.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,410]
 gi|257830412|gb|EEV57019.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,408]
 gi|260073606|gb|EEW61932.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium C68]
 gi|291595929|gb|EFF27210.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1679]
 gi|291599272|gb|EFF30302.1| tRNA-specific adenosine deaminase [Enterococcus faecium U0317]
 gi|291605396|gb|EFF34843.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1162]
 gi|313589110|gb|EFR67955.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecium TX0133a01]
 gi|313592389|gb|EFR71234.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecium TX0133B]
 gi|313596469|gb|EFR75314.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecium TX0133A]
 gi|313599640|gb|EFR78483.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecium TX0133C]
 gi|313641895|gb|EFS06475.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecium TX0133a04]
 gi|313645848|gb|EFS10428.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecium TX0082]
          Length = 171

 Score = 93.4 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 26/160 (16%)

Query: 1   MPVSSFD----ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGC 52
           M  ++ D     ++M  AL  ++    L      +  ++V DG VIGRG     T     
Sbjct: 1   MVNTNLDAVEKEKWMRLALAEAKKAEMLHEV--PIGAVVVLDGKVIGRGYNLRETTQDAT 58

Query: 53  PHAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
            HAE+ A++EA E+        A  +VTLEPC      P C+  +I   +  V     DP
Sbjct: 59  THAEMLAIKEACEKVGSWRLEDAALFVTLEPC------PMCSGAMILSRVAEVYFGAYDP 112

Query: 108 DVRVSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
               +G  +  L       +  +   ++E E  + L  + 
Sbjct: 113 KGGTAGTLMNLLEDERFNHQAYVEGGILEDECGMILTDFF 152


>gi|108799186|ref|YP_639383.1| hypothetical protein Mmcs_2219 [Mycobacterium sp. MCS]
 gi|119868301|ref|YP_938253.1| hypothetical protein Mkms_2265 [Mycobacterium sp. KMS]
 gi|126434794|ref|YP_001070485.1| hypothetical protein Mjls_2208 [Mycobacterium sp. JLS]
 gi|108769605|gb|ABG08327.1| bifunctional deaminase-reductase-like protein [Mycobacterium sp.
           MCS]
 gi|119694390|gb|ABL91463.1| bifunctional deaminase-reductase domain protein [Mycobacterium sp.
           KMS]
 gi|126234594|gb|ABN97994.1| bifunctional deaminase-reductase domain protein [Mycobacterium sp.
           JLS]
          Length = 257

 Score = 93.4 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 85/257 (33%), Gaps = 23/257 (8%)

Query: 120 SQKGIIVDRMMESEGKIFLH---AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
           S  G     +   E          Y      +R  +   +  S D    +A   S  +  
Sbjct: 4   SAAGTQFTVLGAVESVADDRVGDFYAYPDALRRCWVRGNMIASVDGGATVA-GRSGGLGA 62

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADD---PELTCRLN------GLQEHSPMRIILDPH 227
              +     +R  +D I+VG  TV  +D    +L+          G  E  P+  +L   
Sbjct: 63  AGDRALFAKMRQAADVIVVGASTVRTEDYSGAQLSAAARQDRAARGQSEVPPIA-VLTRS 121

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI----IYCDCRDLKKLLTILV 283
             L  D+K+ +   + P+++ +          F      +       D  D    L +L 
Sbjct: 122 ADLDHDAKLFRRTEVPPILLTSARTAATARERFGGLADVVDASGPEPDDVDPATALDLLA 181

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
            RG+  +L EGG  V   F  + L+D + +  + +++G          G +       R 
Sbjct: 182 ARGLLRVLTEGGPGVLGLFTAADLLDELCVTVAPVLVGGEAQRIVTGPGQVRTPLR--RS 239

Query: 344 DYFGSD---VCLEYIGK 357
              G D   +   Y+  
Sbjct: 240 HILGDDDGYLYCRYVRD 256


>gi|297568720|ref|YP_003690064.1| bifunctional deaminase-reductase domain protein [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924635|gb|ADH85445.1| bifunctional deaminase-reductase domain protein [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 212

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 68/172 (39%), Gaps = 14/172 (8%)

Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKI 236
             +  +   R  +DA L+G GT+   D E+  R  G     + +R I+    +L L+ + 
Sbjct: 24  QDRRFLEESRQATDASLLGAGTLREGDAEM--RGPGGILPENRIRAIISASGRLPLEQRK 81

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLV 292
           I      P+I         LA     +   +I    +D    L      L  RGV  LL+
Sbjct: 82  IFQIGPRPLIFTAAERAKSLADQ-AGQRAEVIALPAKDGFLDLAAACRKLARRGVKELLL 140

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS------PLEEGYLEKNF 338
           EGG  +    +  R+VD +++  +  + G     S      PL + +L+   
Sbjct: 141 EGGGTLNFHALRQRIVDELLVTIAPKLSGHRAAISLADGAEPLGDPFLDLQL 192


>gi|253577340|ref|ZP_04854657.1| CMP/dCMP deaminase, zinc-binding [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251843240|gb|EES71271.1| CMP/dCMP deaminase, zinc-binding [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 165

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 61/151 (40%), Gaps = 22/151 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             +M+ A+R +R    +      +  +IV+   ++GRG         G  HAE+ A+ EA
Sbjct: 19  EYWMAEAIREARKAEAI--GEVPIGAVIVRGDEIVGRGHNLRESSLDGTAHAEMIAIREA 76

Query: 64  GEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            E            YVTLEPC      P CA  I++C +  V+    DP    +G  +  
Sbjct: 77  SERLGAWRLLHCRLYVTLEPC------PMCAGAIVQCRVPHVIYGAPDPKAGCAGTLMNL 130

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTR 144
           L       +  I   +++ E    L  +  R
Sbjct: 131 LQEPRFNHRTDITSGILQEECASLLTEFFRR 161


>gi|293552936|ref|ZP_06673591.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1039]
 gi|291602912|gb|EFF33109.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1039]
          Length = 171

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 26/160 (16%)

Query: 1   MPVSSFD----ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGC 52
           M  ++ D     ++M  AL  ++    L      +  ++V DG V+GRG     T     
Sbjct: 1   MVNTNLDAVEKEKWMRLALAEAKKAEMLHEV--PIGAVVVLDGKVVGRGYNLRETTQDAT 58

Query: 53  PHAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
            HAE+ A++EA E+        A  +VTLEPC      P C+  +I   +  V     DP
Sbjct: 59  THAEMLAIKEACEKVGSWRLEDAALFVTLEPC------PMCSGAMILSRVAEVYFGAYDP 112

Query: 108 DVRVSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
               +G  +  L       +  +   ++E E  + L  + 
Sbjct: 113 KGGTAGTLMNLLEDERFNHQAYVEGGILEDECGMILTDFF 152


>gi|295402713|ref|ZP_06812655.1| CMP/dCMP deaminase zinc-binding [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312109168|ref|YP_003987484.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. Y4.1MC1]
 gi|294975244|gb|EFG50880.1| CMP/dCMP deaminase zinc-binding [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311214269|gb|ADP72873.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. Y4.1MC1]
          Length = 161

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 22/152 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  +M  A+  ++    +      +  +IV+ G VI R      TA     HAE+ A++E
Sbjct: 4   DEYYMRLAIEEAKQAEQI--GEVPIGAIIVQGGNVIARAHNLRETAQRAIAHAEILAIDE 61

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++A       AT YVTLEPC+       CA  I+   I+RVV    DP    +G  + 
Sbjct: 62  ACKKAGSWRLEDATLYVTLEPCAM------CAGAIVLARIKRVVFGASDPKGGCAGTLMN 115

Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYLTR 144
            L       +  ++  +++ E    L  +  +
Sbjct: 116 LLQEGRFNHQAEVIGGVLQEECGQMLSNFFRK 147


>gi|238753915|ref|ZP_04615275.1| tRNA-specific adenosine deaminase [Yersinia ruckeri ATCC 29473]
 gi|238707903|gb|EEQ00261.1| tRNA-specific adenosine deaminase [Yersinia ruckeri ATCC 29473]
          Length = 171

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 59/156 (37%), Gaps = 22/156 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56
           M     D  +M  AL  ++           V  ++V D   IG G       +    HAE
Sbjct: 1   MSTEYNDEYWMRQALELAQRAQ--EEGEVPVGAVLVLDNQAIGIGWNRPIVHHDPTAHAE 58

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL + G+  +      AT YVTLEPC        CA  ++   IRR+V   +D     
Sbjct: 59  MMALRQGGQALQNYRLLNATLYVTLEPC------VMCAGAMVHSRIRRLVYGANDIKTGA 112

Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
           +G  L  L   G+     I   ++  E    L  + 
Sbjct: 113 AGSLLDILRHPGMNHQVEITAGVLAEECSQTLSTFF 148


>gi|289627113|ref|ZP_06460067.1| CMP/dCMP deaminase, zinc-binding protein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330869937|gb|EGH04646.1| CMP/dCMP deaminase, zinc-binding protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 271

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 8/128 (6%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-GEEA 67
           + M+AA+   +     TS  P V  +IVK+G VI  G        HAE  A+E+    + 
Sbjct: 9   QAMNAAIEQLKK---CTS-YPKVGAVIVKNGEVISTGYRGEVSGKHAERVAIEKLPNPDL 64

Query: 68  RGATAYVTLEPC-SHYGRSP--PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            G+T Y TLEPC   +G  P   CA  + +  +  VV+ V DP+ R+  +G + L + G+
Sbjct: 65  TGSTIYTTLEPCVEMHGLQPHKSCAGLLKDLNVEHVVIGVLDPNGRIYCQGYEELIKAGV 124

Query: 125 IVDRMMES 132
            V      
Sbjct: 125 KVTFFTPE 132


>gi|237653174|ref|YP_002889488.1| CMP/dCMP deaminase zinc-binding [Thauera sp. MZ1T]
 gi|237624421|gb|ACR01111.1| CMP/dCMP deaminase zinc-binding [Thauera sp. MZ1T]
          Length = 154

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 61/150 (40%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M AAL  +R   G     P V  ++V  G ++GRG     G      HAE+ AL +
Sbjct: 3   DEDYMRAALEQAR-AAGAADEVP-VGAVVVCGGEIVGRGFNQPIGRHDPTAHAEIMALRD 60

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A          G   YVTLEPC+       C+  I+   I RVV    DP   V+G  L 
Sbjct: 61  AAAHLGNYRLPGCELYVTLEPCAM------CSGAIMHARIARVVFGARDPKTGVAGSVLD 114

Query: 118 W-----LSQKGIIVDRMMESEGKIFLHAYL 142
                 L+    I   ++  E    L ++ 
Sbjct: 115 LFAEPRLNHHATIEGGLLADECGRMLSSFF 144


>gi|255023462|ref|ZP_05295448.1| tRNA-specific adenosine deaminase [Listeria monocytogenes FSL
           J1-208]
          Length = 156

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 22/150 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
           A FM  AL  +     +      +  ++V DG +IGR      T+     HAE+ A+++A
Sbjct: 4   AFFMQQALEEAEKAREI--GEVPIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDA 61

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            +        GA  YVTLEPC      P C+  I+   I +V     DP    +G  +  
Sbjct: 62  CKHQNSWRLSGAELYVTLEPC------PMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNL 115

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLT 143
           L          +   +ME E    L  +  
Sbjct: 116 LQDDRFNHTCEVEAGLMEKESSEMLKNFFQ 145


>gi|295133748|ref|YP_003584424.1| guanine deaminase [Zunongwangia profunda SM-A87]
 gi|294981763|gb|ADF52228.1| guanine deaminase [Zunongwangia profunda SM-A87]
          Length = 158

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 16/116 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
           ++  D +FM  A+  +   +   +  P    ++VKDG +I  G      +     HAE+ 
Sbjct: 1   MTEDDKKFMRRAIALAEEGMNTGAGGP-FGAVVVKDGEIIAEGWNIVTSSNDPTAHAEIT 59

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           A+  A E     +      Y + EPC      P C   I     ++V   ++  D 
Sbjct: 60  AIRRACENLNTFQLENCVLYTSCEPC------PMCLGAIYWARPKKVFYALNHSDA 109


>gi|238788214|ref|ZP_04632009.1| tRNA-specific adenosine deaminase [Yersinia frederiksenii ATCC
           33641]
 gi|238723801|gb|EEQ15446.1| tRNA-specific adenosine deaminase [Yersinia frederiksenii ATCC
           33641]
          Length = 191

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 57/155 (36%), Gaps = 22/155 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57
           P    D  +M  AL  +            V  ++V D  VIG G            HAE+
Sbjct: 27  PAEYSDEYWMQRALALALRAQ--EEGEVPVGAILVLDNQVIGEGWNRPIRDNDPTAHAEI 84

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL + G   +      AT YVTLEPC        CA  ++   IRR+V   +D     +
Sbjct: 85  MALRQGGRAVQNYRLIDATLYVTLEPC------VMCAGAMVHSRIRRLVYGANDLKTGAA 138

Query: 113 GRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
           G  L  L   G+     +   ++       L A+ 
Sbjct: 139 GSLLDILRHPGMNHQIEVCSGVLADACSHQLSAFF 173


>gi|254830845|ref|ZP_05235500.1| hypothetical protein Lmon1_05774 [Listeria monocytogenes 10403S]
          Length = 156

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 63/162 (38%), Gaps = 26/162 (16%)

Query: 8   ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
           A FM  AL  +      G       +  ++V DG +IGR      T+     HAE+ A++
Sbjct: 4   AFFMQQALEEAEKARDIGEV----PIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQ 59

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           +A +        GA  YVTLEPC      P C+  I+   I +V     DP    +G  +
Sbjct: 60  DACKHQNSWRLSGAELYVTLEPC------PMCSGAILLSRIEKVYYGAKDPKAGTAGSLM 113

Query: 117 QWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHIT 153
             L          +   +MESE    L ++     ++     
Sbjct: 114 NLLQDDRFNHTCEVEAGLMESESSEMLKSFFQELRKRNRFNR 155


>gi|290891900|ref|ZP_06554897.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL
           J2-071]
 gi|290558494|gb|EFD92011.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL
           J2-071]
          Length = 156

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 22/150 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
           A FM  AL  +     +      +  ++V DG +IGR      T+     HAE+ A+++A
Sbjct: 4   AFFMQQALEEAEKAREI--GEVPIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDA 61

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            +        GA  YVTLEPC      P C+  I+   I +V     DP    +G  +  
Sbjct: 62  CKHQNSWRLSGAELYVTLEPC------PMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNL 115

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLT 143
           L          +   +ME E    L ++  
Sbjct: 116 LQDDRFNHTCEVEAGLMEKESSEMLKSFFQ 145


>gi|152971415|ref|YP_001336524.1| tRNA-specific adenosine deaminase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150956264|gb|ABR78294.1| tRNA-specific adenosine deaminase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 172

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 63/169 (37%), Gaps = 22/169 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL +
Sbjct: 11  DEYWMRHALTLAKRAW--EEGEVPVGAVLVHNNQVIGEGWNRPIGRHDPTAHAEIMALRQ 68

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            G   +      AT YVTLEPC        CA  ++   I R+V    D     +G  + 
Sbjct: 69  GGLVLQNYRLIDATLYVTLEPC------VMCAGAMVHSRIARLVFGARDAKTGAAGSLMD 122

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
            L   G+     I + ++       L  +   + E++  +      + +
Sbjct: 123 VLHHPGMNHRVEISEGVLAESCSAMLSDFFRWRREEKKALKKAREQTGE 171


>gi|256832227|ref|YP_003160954.1| CMP/dCMP deaminase zinc-binding [Jonesia denitrificans DSM 20603]
 gi|256685758|gb|ACV08651.1| CMP/dCMP deaminase zinc-binding [Jonesia denitrificans DSM 20603]
          Length = 283

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 10/130 (7%)

Query: 1   MPVS--SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
           MP+S    +      A+  +       S N  V  +I +   V+  G  +     HAE  
Sbjct: 1   MPISVGEVEHAHAKKAIEEALKS----SDNARVGAVIARGETVLATGYKSEIDKLHAEQI 56

Query: 59  ALEEA---GEEARGATAYVTLEPCSH-YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           AL +A   G + +GAT Y T+EPC++      PCA+ + E GI  V +   DP+ +V   
Sbjct: 57  ALHKAEMQGVDVKGATLYTTMEPCANSRTSRVPCAELVAEAGIVEVHIGEYDPNPQVYRL 116

Query: 115 GLQWLSQKGI 124
           G + L  +GI
Sbjct: 117 GWKHLRDRGI 126


>gi|16804756|ref|NP_466241.1| hypothetical protein lmo2719 [Listeria monocytogenes EGD-e]
 gi|224502871|ref|ZP_03671178.1| hypothetical protein LmonFR_10179 [Listeria monocytogenes FSL
           R2-561]
 gi|255029049|ref|ZP_05301000.1| hypothetical protein LmonL_07681 [Listeria monocytogenes LO28]
 gi|16412219|emb|CAD00932.1| lmo2719 [Listeria monocytogenes EGD-e]
          Length = 156

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 61/152 (40%), Gaps = 26/152 (17%)

Query: 8   ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
           A FM  AL  +      G       +  ++V DG +IGR      T+     HAE+ A++
Sbjct: 4   AFFMQQALEEAEKARDIGEV----PIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQ 59

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           +A +        GA  YVTLEPC      P C+  I+   I +V     DP    +G  +
Sbjct: 60  DACKHQNSWRLSGAELYVTLEPC------PMCSGAILLSRIEKVYYGAKDPKAGTAGSLM 113

Query: 117 QWLS-----QKGIIVDRMMESEGKIFLHAYLT 143
             L          +   +MESE    L ++  
Sbjct: 114 NLLQDDRFNHTCEVEAGLMESESSEMLKSFFQ 145


>gi|220932912|ref|YP_002509820.1| tRNA-adenosine deaminase [Halothermothrix orenii H 168]
 gi|219994222|gb|ACL70825.1| tRNA-adenosine deaminase [Halothermothrix orenii H 168]
          Length = 159

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 17/124 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  FM  AL  +R  + L      +  ++V +G ++G G     T      HAE+ A+ +
Sbjct: 4   DEDFMELALEEARKALAL--EEVPIGAVVVCNGEIVGSGHNLKETENDPTAHAEIVAIRD 61

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A  +           YVT+EPC      P CA  I++  ++RVV    DP   V+G    
Sbjct: 62  AARKLSSWRLNECQLYVTIEPC------PMCAGAIMQARLQRVVYGAVDPKAGVAGSLYN 115

Query: 118 WLSQ 121
            L  
Sbjct: 116 LLQD 119


>gi|167749860|ref|ZP_02421987.1| hypothetical protein EUBSIR_00828 [Eubacterium siraeum DSM 15702]
 gi|167657172|gb|EDS01302.1| hypothetical protein EUBSIR_00828 [Eubacterium siraeum DSM 15702]
          Length = 150

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----CPHAEVQA 59
           + D  +M+  +  ++           V  ++V KDG +IG G            HAE+ A
Sbjct: 2   TADEEYMTLCIELAKKAA--EKGECPVGAIVVDKDGRIIGEGYNMREAEQMPTAHAEIIA 59

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           +E+A +          T YVTLEPC      P CA  II   I+R+V    D        
Sbjct: 60  IEQAAKAMNSWRLTECTLYVTLEPC------PMCAGAIINSRIKRLVYGAFDEKGGACAS 113

Query: 115 GLQW----LSQKGIIVDRMMESEGKIFLHAYL 142
            ++      + + ++  R+++ E    L  + 
Sbjct: 114 LMEIFDYPFNHRPMVRSRVLQDECAKLLTEFF 145


>gi|170767485|ref|ZP_02901938.1| tRNA-specific adenosine deaminase [Escherichia albertii TW07627]
 gi|170123819|gb|EDS92750.1| tRNA-specific adenosine deaminase [Escherichia albertii TW07627]
          Length = 178

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 60/167 (35%), Gaps = 21/167 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL + 
Sbjct: 20  EYWMRHALTLAKRAWDERE--VPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQG 77

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +      AT YVTLEPC        CA  +I   I RVV    D     +G  +  
Sbjct: 78  GLVMQNYRLIDATLYVTLEPC------VMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDV 131

Query: 119 LSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           L   G    + +   + ++    L +   R   +      K   S D
Sbjct: 132 LHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIKARKKAQSSTD 178


>gi|290476033|ref|YP_003468930.1| TadA, tRNA-specific adenosine deaminase [Xenorhabdus bovienii
           SS-2004]
 gi|289175363|emb|CBJ82166.1| TadA, tRNA-specific adenosine deaminase [Xenorhabdus bovienii
           SS-2004]
          Length = 169

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 61/163 (37%), Gaps = 22/163 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M     D  +M  A+  +      +     V  ++V +  +I  G     T +    HAE
Sbjct: 1   MTEIYSDEYWMRRAMELAMQAQ--SQDEIPVGAVLVANNKIIAEGYNHPITEHDPTAHAE 58

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL   G E +       T YVTLEPC        CA  ++   I+R+V    D     
Sbjct: 59  IIALRRGGIELQNYRLLNTTLYVTLEPC------VMCAGAMVHSRIQRLVYGASDMKTGA 112

Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKR 149
           +G  +  L   G+     I   ++  E    L  +  ++ E+ 
Sbjct: 113 AGSLIDILRHPGMNHQIEITAGVLAQECATMLSTFFKQRREQH 155


>gi|254827285|ref|ZP_05231972.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL
           N3-165]
 gi|258599666|gb|EEW12991.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL
           N3-165]
          Length = 156

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 60/152 (39%), Gaps = 26/152 (17%)

Query: 8   ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
           A FM  AL  +      G       +  ++V DG +IGR      T+     HAE+ A++
Sbjct: 4   AFFMQQALEEAEKARDIGEV----PIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQ 59

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           +A +        GA  YVTLEPC      P C+  I+   I +V     DP    +G  +
Sbjct: 60  DACKHQNSWRLSGAELYVTLEPC------PMCSGAILLSRIEKVYYGAKDPKAGTAGSLM 113

Query: 117 QWLS-----QKGIIVDRMMESEGKIFLHAYLT 143
             L          +   +ME E    L ++  
Sbjct: 114 NLLQDDRFNHTCEVEAGLMEKESSEMLKSFFQ 145


>gi|260945269|ref|XP_002616932.1| hypothetical protein CLUG_02376 [Clavispora lusitaniae ATCC 42720]
 gi|238848786|gb|EEQ38250.1| hypothetical protein CLUG_02376 [Clavispora lusitaniae ATCC 42720]
          Length = 590

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/135 (31%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEEAGEE 66
            +FM  AL  +R   G T T  +V  ++V DG V+  G +    G  HAE  ALE+  E+
Sbjct: 442 RKFMELALENARK-CGETQTQFNVGAVLVLDGQVLSTGHSRELPGNTHAEQCALEKYFEK 500

Query: 67  ------ARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-W 118
                   G   Y T+EPCS     + PC   II   I+   V V +PD  V     Q  
Sbjct: 501 TGQRNVPEGTEIYTTMEPCSLRLSGNLPCVDRIIATNIKTCYVGVVEPDTFVENNTGQAK 560

Query: 119 LSQKGIIVDRMMESE 133
           L + G+    +   E
Sbjct: 561 LREAGVEYIHIPGYE 575


>gi|217967615|ref|YP_002353121.1| CMP/dCMP deaminase zinc-binding [Dictyoglomus turgidum DSM 6724]
 gi|217336714|gb|ACK42507.1| CMP/dCMP deaminase zinc-binding [Dictyoglomus turgidum DSM 6724]
          Length = 156

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 17/121 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57
             SS D  FM  A++ ++    L      V  +IV +G ++GRG            HAE+
Sbjct: 4   KFSSIDEYFMHEAIKEAKKA--LRKGEVPVGAVIVYNGQIVGRGYNLRESKKNPISHAEM 61

Query: 58  QALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+E+A ++ +G      T YVTLEPC        C   I+   I R+V   ++ +   +
Sbjct: 62  IAIEKAAKKLKGWRLCNCTLYVTLEPCIM------CFGAILNSRISRLVYGTENREEGFT 115

Query: 113 G 113
            
Sbjct: 116 Q 116


>gi|227891209|ref|ZP_04009014.1| nucleoside deaminase [Lactobacillus salivarius ATCC 11741]
 gi|227867083|gb|EEJ74504.1| nucleoside deaminase [Lactobacillus salivarius ATCC 11741]
          Length = 169

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 59/148 (39%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
           +FM  AL  ++    +      + C+IVKDG +IGRG      +     HAE+ A+EEA 
Sbjct: 13  KFMKEALFEAKLAAKI--GEVPIGCVIVKDGKIIGRGHNLREHSQNATLHAEMLAIEEAN 70

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           E            +VTLEPC      P C+  II   I  V     D      G  +  L
Sbjct: 71  ETVNSWRLVDTQLFVTLEPC------PMCSGAIINSRIPEVYYGASDSKAGTVGTLMNLL 124

Query: 120 S-----QKGIIVDRMMESEGKIFLHAYL 142
                  +  +   ++E+E    L  + 
Sbjct: 125 EDSRFNHQSFVEKGILENECASILKDFF 152


>gi|29376713|ref|NP_815867.1| cytidine/deoxycytidylate deaminase family protein [Enterococcus
           faecalis V583]
 gi|227520261|ref|ZP_03950310.1| nucleoside deaminase [Enterococcus faecalis TX0104]
 gi|227555305|ref|ZP_03985352.1| nucleoside deaminase [Enterococcus faecalis HH22]
 gi|229549515|ref|ZP_04438240.1| nucleoside deaminase [Enterococcus faecalis ATCC 29200]
 gi|256617220|ref|ZP_05474066.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis ATCC
           4200]
 gi|256763008|ref|ZP_05503588.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T3]
 gi|256853656|ref|ZP_05559021.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T8]
 gi|256956593|ref|ZP_05560764.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis DS5]
 gi|256963481|ref|ZP_05567652.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis HIP11704]
 gi|257079519|ref|ZP_05573880.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis JH1]
 gi|257084716|ref|ZP_05579077.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis Fly1]
 gi|257087338|ref|ZP_05581699.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis D6]
 gi|257090472|ref|ZP_05584833.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis CH188]
 gi|294779058|ref|ZP_06744471.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis PC1.1]
 gi|307270381|ref|ZP_07551686.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX4248]
 gi|307272388|ref|ZP_07553644.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX0855]
 gi|307277264|ref|ZP_07558368.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX2134]
 gi|307287809|ref|ZP_07567847.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX0109]
 gi|307290876|ref|ZP_07570767.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX0411]
 gi|312901462|ref|ZP_07760737.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX0470]
 gi|312903780|ref|ZP_07762953.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX0635]
 gi|312953348|ref|ZP_07772190.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX0102]
 gi|29344177|gb|AAO81937.1| cytidine/deoxycytidylate deaminase family protein [Enterococcus
           faecalis V583]
 gi|227072340|gb|EEI10303.1| nucleoside deaminase [Enterococcus faecalis TX0104]
 gi|227175516|gb|EEI56488.1| nucleoside deaminase [Enterococcus faecalis HH22]
 gi|229305333|gb|EEN71329.1| nucleoside deaminase [Enterococcus faecalis ATCC 29200]
 gi|256596747|gb|EEU15923.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis ATCC
           4200]
 gi|256684259|gb|EEU23954.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T3]
 gi|256710599|gb|EEU25642.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T8]
 gi|256947089|gb|EEU63721.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis DS5]
 gi|256953977|gb|EEU70609.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis HIP11704]
 gi|256987549|gb|EEU74851.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis JH1]
 gi|256992746|gb|EEU80048.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis Fly1]
 gi|256995368|gb|EEU82670.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis D6]
 gi|256999284|gb|EEU85804.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis CH188]
 gi|294453888|gb|EFG22277.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis PC1.1]
 gi|306498076|gb|EFM67602.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX0411]
 gi|306501197|gb|EFM70502.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX0109]
 gi|306506194|gb|EFM75360.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX2134]
 gi|306510942|gb|EFM79956.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX0855]
 gi|306513289|gb|EFM81916.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX4248]
 gi|310628736|gb|EFQ12019.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX0102]
 gi|310632854|gb|EFQ16137.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX0635]
 gi|311291451|gb|EFQ70007.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX0470]
 gi|315025888|gb|EFT37820.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX2137]
 gi|315028203|gb|EFT40135.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX4000]
 gi|315035707|gb|EFT47639.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX0027]
 gi|315149190|gb|EFT93206.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX0012]
 gi|315154468|gb|EFT98484.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX0031]
 gi|315157427|gb|EFU01444.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX0312]
 gi|315161835|gb|EFU05852.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX0645]
 gi|315164307|gb|EFU08324.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX1302]
 gi|315166488|gb|EFU10505.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX1341]
 gi|315171494|gb|EFU15511.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX1342]
 gi|315575193|gb|EFU87384.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX0309B]
 gi|315578180|gb|EFU90371.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX0630]
 gi|315582620|gb|EFU94811.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX0309A]
 gi|323481270|gb|ADX80709.1| cytidine and deoxycytidylate deaminase family protein [Enterococcus
           faecalis 62]
 gi|327535599|gb|AEA94433.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis OG1RF]
          Length = 173

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 22/151 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
             FM  A+  ++   GL      +  +IV+ G +IGRG            HAE+ A++EA
Sbjct: 14  EFFMREAIAEAKKAEGLAEV--PIGAVIVRQGEIIGRGHNLREARQEATAHAEMYAIQEA 71

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                         +VTLEPC      P C+  ++   I  V     DP    +G  +  
Sbjct: 72  CRGIENWRLEETQLFVTLEPC------PMCSGAMLLARIPEVYYGATDPKAGTAGTLMNL 125

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTR 144
           L          +   ++E E ++ L  +  +
Sbjct: 126 LEDERFNHVAYVEAGVLEEECRLLLVQFFKK 156


>gi|217966083|ref|YP_002351761.1| tRNA-specific adenosine deaminase [Listeria monocytogenes HCC23]
 gi|217335353|gb|ACK41147.1| tRNA-specific adenosine deaminase [Listeria monocytogenes HCC23]
 gi|307572307|emb|CAR85486.1| tRNA-specific adenosine deaminase, putative [Listeria monocytogenes
           L99]
          Length = 156

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 22/150 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
           A FM  AL  +     +      +  ++V DG +IGR      T+     HAE+ A+++A
Sbjct: 4   AFFMQQALEEAEKAREI--GEVPIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDA 61

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            +        GA  YVTLEPC      P C+  I+   I +V     DP    +G  +  
Sbjct: 62  CKHQNSWRLSGAELYVTLEPC------PMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNL 115

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLT 143
           L          +   +ME E    L ++  
Sbjct: 116 LQDDRFNHTCEVEAGLMEKESSEMLKSFFQ 145


>gi|297581254|ref|ZP_06943178.1| zinc-binding domain-containing protein [Vibrio cholerae RC385]
 gi|297534570|gb|EFH73407.1| zinc-binding domain-containing protein [Vibrio cholerae RC385]
          Length = 193

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 22/176 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
            S+ D +FM      +            V  ++V+DG +I  G     T +    HAE++
Sbjct: 24  FSAQDEQFMRR--AIALAAQAEAQGEVPVGAVLVRDGEIIAEGWNGSITNHDATAHAEIE 81

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            + +AG+          T YVTLEPC      P CA  ++   ++R+V    D     +G
Sbjct: 82  VIRKAGKALSNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAG 135

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164
             +   S         +   ++E E +  L A+  R+ ++            +   
Sbjct: 136 TVMDLFSSQAAYHYATVEKGLLEEECRAQLQAFFQRRRKEIKAKRDAERKDAERKN 191


>gi|262040295|ref|ZP_06013546.1| tRNA-specific adenosine deaminase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259042404|gb|EEW43424.1| tRNA-specific adenosine deaminase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 180

 Score = 93.0 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 63/169 (37%), Gaps = 22/169 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL +
Sbjct: 19  DEYWMRHALTLAKRAW--EEGEVPVGAVLVHNNQVIGEGWNRPIGRHDPTAHAEIMALRQ 76

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            G   +      AT YVTLEPC        CA  ++   I R+V    D     +G  + 
Sbjct: 77  GGLVLQNYRLIDATLYVTLEPC------VMCAGAMVHSRIARLVFGARDAKTGAAGSLMD 130

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
            L   G+     I + ++       L  +   + E++  +      + +
Sbjct: 131 VLHHPGMNHRVAISEGVLAESCSAMLSDFFRWRREEKKALKKAREQTGE 179


>gi|257082102|ref|ZP_05576463.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis E1Sol]
 gi|257419759|ref|ZP_05596753.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T11]
 gi|257422022|ref|ZP_05599012.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis X98]
 gi|256990132|gb|EEU77434.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis E1Sol]
 gi|257161587|gb|EEU91547.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T11]
 gi|257163846|gb|EEU93806.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis X98]
 gi|315157050|gb|EFU01067.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX0043]
          Length = 173

 Score = 93.0 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 22/151 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
             FM  A+  ++   GL      +  +IV+ G +IGRG            HAE+ A++EA
Sbjct: 14  EFFMREAIAEAKKAEGLAEV--PIGAVIVRKGEIIGRGHNLREARQEATAHAEMYAIQEA 71

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                         +VTLEPC      P C+  ++   I  V     DP    +G  +  
Sbjct: 72  CRGIENWRLEETQLFVTLEPC------PMCSGAMLLARIPEVYYGATDPKAGTAGTLMNL 125

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTR 144
           L          +   ++E E ++ L  +  +
Sbjct: 126 LEDERFNHVAYVEAGVLEEECRLLLVQFFKK 156


>gi|242796726|ref|XP_002482861.1| riboflavin biosynthesis protein Rib7, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218719449|gb|EED18869.1| riboflavin biosynthesis protein Rib7, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 341

 Score = 93.0 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 73/185 (39%), Gaps = 35/185 (18%)

Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLD--SKII----KTALLAPVIIVTENDDPVL 256
           DD E+  R    + H P  II+DP  +      SKII    +    AP +I+ ++  P  
Sbjct: 146 DDEEMIIRKRQEKLHQPRPIIIDPKARWVPQETSKIIELVRQGRGKAPFVIIAKSTSPPQ 205

Query: 257 --ALAFRKKNINIIYCDCR---------------DLKKLLTILV-GRGVTSLLVEGGAAV 298
                  K     I  D                 D   +L +L     + S+++EGG ++
Sbjct: 206 HGRDLLEKYGGKFIALDTVASDINDENGETHRHFDWHDILHVLATKENIRSIMIEGGGSI 265

Query: 299 AHSFINS----RLVDSIILYRSQIVIGEGGI----PSPLEE---GYLEKNFMCVRRDYFG 347
            +S ++      L+DS+I+  +   +G+GG+       ++E            V+   FG
Sbjct: 266 INSLLSEQKFSGLIDSVIVTIAPTWLGQGGVVVSPKRRVDEHGYAIPASRLTDVKWYPFG 325

Query: 348 SDVCL 352
            DV L
Sbjct: 326 EDVVL 330



 Score = 36.0 bits (82), Expect = 9.9,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 196 GIGTVLADDPELTCRLNGLQEH 217
           G+GT +AD+P L CR+ G   +
Sbjct: 65  GVGTAIADNPGLNCRIEGAGGY 86


>gi|300311527|ref|YP_003775619.1| cytosine/adenosine deaminases protein [Herbaspirillum seropedicae
           SmR1]
 gi|300074312|gb|ADJ63711.1| cytosine/adenosine deaminases protein [Herbaspirillum seropedicae
           SmR1]
          Length = 185

 Score = 93.0 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 57/152 (37%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
             D   M AAL  +R    L      V  ++VKDG+VI  G     G      HAE+ AL
Sbjct: 16  EADLLHMRAALEQARHAWAL--GEVPVGAVVVKDGVVIATGFNQPIGKHDPTAHAEIMAL 73

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A E        G   YVTLEPC        C+  ++   + RVV    DP     G  
Sbjct: 74  RRAAEILGNYRLPGCELYVTLEPC------VMCSGAMMHARLARVVFGAADPKTGACGSV 127

Query: 116 LQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
           L       L+    ++  +M  E    L  + 
Sbjct: 128 LNLFEQDQLNHHTALLGGVMAEECGQLLKDFF 159


>gi|47095526|ref|ZP_00233135.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           monocytogenes str. 1/2a F6854]
 gi|254899824|ref|ZP_05259748.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           monocytogenes J0161]
 gi|254912971|ref|ZP_05262983.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           monocytogenes J2818]
 gi|254937352|ref|ZP_05269049.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes F6900]
 gi|255025258|ref|ZP_05297244.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           monocytogenes FSL J2-003]
 gi|284800395|ref|YP_003412260.1| hypothetical protein LM5578_0141 [Listeria monocytogenes 08-5578]
 gi|284993581|ref|YP_003415349.1| hypothetical protein LM5923_0141 [Listeria monocytogenes 08-5923]
 gi|47016136|gb|EAL07060.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           monocytogenes str. 1/2a F6854]
 gi|258609958|gb|EEW22566.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes F6900]
 gi|284055957|gb|ADB66898.1| hypothetical protein LM5578_0141 [Listeria monocytogenes 08-5578]
 gi|284059048|gb|ADB69987.1| hypothetical protein LM5923_0141 [Listeria monocytogenes 08-5923]
 gi|293590973|gb|EFF99307.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           monocytogenes J2818]
          Length = 156

 Score = 93.0 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 61/152 (40%), Gaps = 26/152 (17%)

Query: 8   ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
           A FM  AL  +      G       +  ++V DG +IGR      T+     HAE+ A++
Sbjct: 4   AFFMQQALEEAEKARDIGEV----PIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQ 59

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           +A +        GA  YVTLEPC      P C+  I+   I +V     DP    +G  +
Sbjct: 60  DACKHQNSWRLSGAELYVTLEPC------PMCSGAILLSRIEKVYYGAKDPKAGTAGSLM 113

Query: 117 QWLS-----QKGIIVDRMMESEGKIFLHAYLT 143
             L          +   +MESE    L ++  
Sbjct: 114 NLLQDDRFNHTCEVEAGLMESESSEMLKSFFQ 145


>gi|197285737|ref|YP_002151609.1| tRNA-specific adenosine deaminase [Proteus mirabilis HI4320]
 gi|194683224|emb|CAR43904.1| tRNA-specific adenosine deaminase [Proteus mirabilis HI4320]
          Length = 176

 Score = 93.0 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 22/156 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           M     D  +M  A+  +     L      V  ++V +  +I +G            HAE
Sbjct: 1   MNKIKDDIYWMHKAIEQAHKAQQL--GEIPVGAVLVAENKIIAKGWNHSIIDNDPTAHAE 58

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL + G+  +      AT Y+TLEPC        CA  I+   ++RVV    D     
Sbjct: 59  IMALRKGGKHLQNYRLLDATLYITLEPC------VMCAGAIVHSRVKRVVYGASDLKTGA 112

Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
           +G  +  L   G+     I   ++  E    L  + 
Sbjct: 113 AGSFIDILQHPGMNHKVEITSGVLGEECAQLLSQFF 148


>gi|255527107|ref|ZP_05393995.1| CMP/dCMP deaminase zinc-binding [Clostridium carboxidivorans P7]
 gi|296187896|ref|ZP_06856289.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Clostridium carboxidivorans P7]
 gi|255509209|gb|EET85561.1| CMP/dCMP deaminase zinc-binding [Clostridium carboxidivorans P7]
 gi|296047517|gb|EFG86958.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Clostridium carboxidivorans P7]
          Length = 145

 Score = 93.0 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 17/121 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA-- 63
           FM  A++ +     L      V  +IVKD I+I R      T      HAE+ A++EA  
Sbjct: 4   FMREAIKEAEKS--LVLGEVPVGVVIVKDNIIIARAHNLRETLQDTLAHAEILAIKEASQ 61

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                   G + YVTLEPC      P CA  I++  I  V +   +P+    G  +  L 
Sbjct: 62  YTNNWRLSGCSMYVTLEPC------PMCAGAILQSRISNVYIGTFEPNTGACGSVINILQ 115

Query: 121 Q 121
            
Sbjct: 116 N 116


>gi|254786582|ref|YP_003074011.1| cytidine and deoxycytidylate deaminase family protein
           [Teredinibacter turnerae T7901]
 gi|237687430|gb|ACR14694.1| cytidine and deoxycytidylate deaminase family protein
           [Teredinibacter turnerae T7901]
          Length = 164

 Score = 93.0 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/129 (31%), Positives = 57/129 (44%), Gaps = 17/129 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
           +S  D  +M+ AL  +R           V  ++V+DG +IGRG     G      HAE+ 
Sbjct: 1   MSLNDEHWMTEALVLAREAAAQ--GEVPVGAVLVQDGAIIGRGSNNPIGSCDASGHAEIC 58

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL +AG+  +      AT YVT+EPC        C   I+   I RVV    +P   V  
Sbjct: 59  ALRDAGQRQKNYRLPNATLYVTIEPC------TMCLGAIVHARIARVVFGAPEPKAGVLE 112

Query: 114 RGLQWLSQK 122
              + LS K
Sbjct: 113 SNPELLSAK 121


>gi|291618438|ref|YP_003521180.1| TadA [Pantoea ananatis LMG 20103]
 gi|291153468|gb|ADD78052.1| TadA [Pantoea ananatis LMG 20103]
          Length = 171

 Score = 93.0 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 62/169 (36%), Gaps = 22/169 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
             D  +M  AL  ++           V  ++V+   VIG G     G      HAE+ AL
Sbjct: 11  EQDEYWMRRALTLAQRAW--EQGEVPVGAVLVQGDRVIGEGWNRPIGQHDPTAHAEIMAL 68

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            + G+          T YVTLEPC        CA  ++   I R+V    D     +G  
Sbjct: 69  RQGGKVLENYRLLNTTLYVTLEPCIM------CAGAMVHSRIGRLVYGAHDVKTGAAGSL 122

Query: 116 LQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
           +  L   G+     +   ++E E    L  +   + +++  +      S
Sbjct: 123 IDILGHPGMNHQVALHQGVLEEECAAMLSDFFRMRRQQQKALRQAQRES 171


>gi|238896010|ref|YP_002920746.1| tRNA-specific adenosine deaminase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238548328|dbj|BAH64679.1| tRNA-specific adenosine deaminase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 180

 Score = 93.0 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 22/169 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL +
Sbjct: 19  DEYWMRHALTLAKRAW--EEGEVPVGAVLVHNNQVIGEGWNRPIGRHDPTAHAEIMALRQ 76

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            G   +      AT YVTLEPC        CA  ++   I R+V    D     +G  + 
Sbjct: 77  GGLVLQNYRLIDATLYVTLEPC------VMCAGAMVHSRIARLVFGARDAKTGAAGSLMD 130

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
            L   G+     I + ++       L  +   + E++  +    A + +
Sbjct: 131 VLHHPGMNHRVEISEGVLAESCSAMLSDFFRWRREEKKALKKARAQTGE 179


>gi|229542244|ref|ZP_04431304.1| CMP/dCMP deaminase zinc-binding [Bacillus coagulans 36D1]
 gi|229326664|gb|EEN92339.1| CMP/dCMP deaminase zinc-binding [Bacillus coagulans 36D1]
          Length = 169

 Score = 93.0 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 22/154 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
           + + D  +M  A++ +     L      +  +IV D  VI        T      HAE+ 
Sbjct: 1   MENRDEYYMRLAIQEAVKAQRLREV--PIGAVIVLDEKVIAAAHNLRETTQRAAAHAELL 58

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+E+A E         A  YVTLEPC      P C+  +++  I+RVV    DP    +G
Sbjct: 59  AIEKACEVTGSWRLENAELYVTLEPC------PMCSGAVLQSRIKRVVYGAKDPKAGCAG 112

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
             +  L       +  +V  ++E+E    L ++ 
Sbjct: 113 SLMNLLEDGRFNHRSEVVSGVLETECGELLRSFF 146


>gi|50085441|ref|YP_046951.1| putative deaminase [Acinetobacter sp. ADP1]
 gi|49531417|emb|CAG69129.1| putative deaminase [Acinetobacter sp. ADP1]
          Length = 174

 Score = 93.0 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 66/179 (36%), Gaps = 25/179 (13%)

Query: 1   MPVSSF--DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
           M +S    D  +M  A   +            V  +IV    VIG G  A         H
Sbjct: 1   MSLSDTFNDEYWMQLAYEQAVRAAEHNEV--PVGAVIVSQNKVIGSGYNAPITLNDPTAH 58

Query: 55  AEVQALEEAGEE------ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           AE++A+  A E          AT YVTLEPC        C   ++   I RVV    +P 
Sbjct: 59  AEIRAIRMACESVKNYRLPEDATLYVTLEPC------TMCVGALVHARIHRVVFATTEPK 112

Query: 109 VRVSGRGLQWL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
                   Q L     + K +I    M+++    L  +  ++ E++  +  +   + +N
Sbjct: 113 AGSLVSARQLLNMGYYNHKFLIEHGCMQAQCSKQLSDFFRKRREQKRELRQQYIATSEN 171


>gi|224498434|ref|ZP_03666783.1| hypothetical protein LmonF1_01565 [Listeria monocytogenes Finland
           1988]
          Length = 156

 Score = 93.0 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 61/152 (40%), Gaps = 26/152 (17%)

Query: 8   ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
           A FM  AL  +      G       +  ++V DG +IGR      T+     HAE+ A++
Sbjct: 4   AFFMQQALEEAEKARDIGEV----PIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQ 59

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           +A +        GA  YVTLEPC      P C+  I+   I +V     DP    +G  +
Sbjct: 60  DACKHQNSWRLSGAELYVTLEPC------PMCSGAILLSRIEKVYYGAKDPKAGTAGSLM 113

Query: 117 QWLS-----QKGIIVDRMMESEGKIFLHAYLT 143
             L          +   +MESE    L ++  
Sbjct: 114 NLLQDDRFNHTCEVEAGLMESESSEMLKSFFQ 145


>gi|81427949|ref|YP_394948.1| putative cytidine deaminase [Lactobacillus sakei subsp. sakei 23K]
 gi|78609590|emb|CAI54636.1| Putative cytidine deaminase [Lactobacillus sakei subsp. sakei 23K]
          Length = 172

 Score = 92.6 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 62/157 (39%), Gaps = 27/157 (17%)

Query: 2   PVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHA 55
             +  D ++M  A+  +      G       +  +IVKDG +IGRG      A     HA
Sbjct: 4   TQTEID-QWMQVAIDEANQARIIGEV----PIGAVIVKDGQIIGRGHNIREHAQDATLHA 58

Query: 56  EVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A++EA              +VTLEPC      P CA  II   I  V     DP   
Sbjct: 59  EIIAIQEACMVEKSWRLEDTAIFVTLEPC------PMCAGAIINSRIPNVYFGASDPKAG 112

Query: 111 VSGRGLQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           V+G  +  L     + +  +V  + E+E    L  + 
Sbjct: 113 VTGTLMNLLTDKRFNHQATVVAGVREAECAALLQTFF 149


>gi|229525486|ref|ZP_04414891.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae bv. albensis
           VL426]
 gi|229339067|gb|EEO04084.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae bv. albensis
           VL426]
          Length = 193

 Score = 92.6 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 67/176 (38%), Gaps = 22/176 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
            S+ D +FM      +            V  ++V+DG +I  G     T +    HAE++
Sbjct: 24  FSAQDEQFMRR--AIALAAQAEAQGEVPVGAVLVRDGEIIAEGWNSSITNHDATAHAEIE 81

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            + +AG+          T YVTLEPC      P CA  ++   ++R+V    D     +G
Sbjct: 82  VIRKAGKVLSNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAG 135

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164
             +   S         +   ++E E +  L A+  R+ ++          + +   
Sbjct: 136 TVMDLFSSQAAYHYATVEKGLLEEECRAQLQAFFQRRRKEIKAKRDAERKNAERKN 191


>gi|46908898|ref|YP_015287.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|254851976|ref|ZP_05241324.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL
           R2-503]
 gi|254931009|ref|ZP_05264368.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes HPB2262]
 gi|254994111|ref|ZP_05276301.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           monocytogenes FSL J2-064]
 gi|300763522|ref|ZP_07073520.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           monocytogenes FSL N1-017]
 gi|46882171|gb|AAT05464.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|258605274|gb|EEW17882.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL
           R2-503]
 gi|293582555|gb|EFF94587.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes HPB2262]
 gi|300515799|gb|EFK42848.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           monocytogenes FSL N1-017]
 gi|328469576|gb|EGF40517.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           monocytogenes 220]
 gi|332313149|gb|EGJ26244.1| tRNA-specific adenosine deaminase [Listeria monocytogenes str.
           Scott A]
          Length = 156

 Score = 92.6 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 60/152 (39%), Gaps = 26/152 (17%)

Query: 8   ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
           A FM  AL  +      G       +  ++V DG +IGR      T+     HAE+ A++
Sbjct: 4   AFFMQQALEEAEKARDIGEV----PIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQ 59

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           +A +        GA  YVTLEPC      P C+  I+   I +V     DP    +G  +
Sbjct: 60  DACKHQNSWRLSGAELYVTLEPC------PMCSGAILLSRIEKVYYGAKDPKAGTAGSLM 113

Query: 117 QWLS-----QKGIIVDRMMESEGKIFLHAYLT 143
             L          +   +ME E    L ++  
Sbjct: 114 NLLQDDRFNHTCEVEAGLMEKESSEMLKSFFQ 145


>gi|315284032|ref|ZP_07872011.1| tRNA-specific adenosine deaminase [Listeria marthii FSL S4-120]
 gi|313612324|gb|EFR86487.1| tRNA-specific adenosine deaminase [Listeria marthii FSL S4-120]
          Length = 156

 Score = 92.6 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 61/150 (40%), Gaps = 22/150 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
           A FM  AL  +     +      +  ++V DG +IGR      T+     HAE+ A+++A
Sbjct: 4   AFFMQQALEEAEKAREI--GEVPIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDA 61

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            +        GA  YVTLEPC      P C+  I+   I +V     DP    +G  +  
Sbjct: 62  CKHQNSWRLSGAELYVTLEPC------PMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNL 115

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLT 143
           L          +   +ME+E    L ++  
Sbjct: 116 LQDDRFNHTCEVEAGLMEAESSEMLKSFFQ 145


>gi|309775004|ref|ZP_07670019.1| cytidine/deoxycytidylate deaminase family protein
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917222|gb|EFP62947.1| cytidine/deoxycytidylate deaminase family protein
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 162

 Score = 92.6 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 57/149 (38%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
             +M AA++ +            + C+IVKD  +I RG            HAE+ A+++A
Sbjct: 14  EDYMRAAIKEAVKA--NMKDEVPIGCVIVKDDKIIARGHNLRESKQQSINHAEIIAIQKA 71

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            ++           YVTLEPC        CA  I++  IR V+    DP        +  
Sbjct: 72  CKKIGSWRLEDCDLYVTLEPCCM------CAGAILQSRIRTVIYGASDPKGGSIDSTMHM 125

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYL 142
             Q G      +   +++ E    L  + 
Sbjct: 126 YEQPGFNHYPCVYSGVLQEECSQLLKNFF 154


>gi|290978118|ref|XP_002671783.1| predicted protein [Naegleria gruberi]
 gi|284085355|gb|EFC39039.1| predicted protein [Naegleria gruberi]
          Length = 214

 Score = 92.6 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 54/163 (33%), Gaps = 23/163 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57
             +  D  +M  AL  ++    L      V C+IV D  ++GRG            HAE+
Sbjct: 13  KFTEQDEIYMREALNMAQKA--LEELEVPVGCVIVHDNKIVGRGYNKTNQKKNATRHAEL 70

Query: 58  QALEEAGEEA-----------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           +A +E  E             +  T YVT+EPC        CA  +I   I RVV    +
Sbjct: 71  EAFDEITENYSEELNNNVNFFKECTLYVTVEPC------VMCASALILLKIGRVVCGCMN 124

Query: 107 PDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
                 G  L         ++     +     +    +     
Sbjct: 125 ERFGGCGSVLNIHQSCYNSLNHNHHHDQHGNNNQLNWKYECVH 167


>gi|308187798|ref|YP_003931929.1| tRNA-specific adenosine deaminase [Pantoea vagans C9-1]
 gi|308058308|gb|ADO10480.1| tRNA-specific adenosine deaminase [Pantoea vagans C9-1]
          Length = 163

 Score = 92.6 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 61/170 (35%), Gaps = 21/170 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
           +   D  +M  AL  +R           V  ++V++  VIG G     G      HAE+ 
Sbjct: 1   MKQQDEYWMRHALSLARRAW--EQGEVPVGAVLVQNDRVIGEGWNRPIGQHDPTAHAEIM 58

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL + G+          T YVTLEPC        CA  ++   I R+V    D     +G
Sbjct: 59  ALRQGGKVLENYRLLDTTLYVTLEPC------VMCAGAMVHSRISRLVYGAHDIKSGAAG 112

Query: 114 RGLQWLSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
             L  L   G    + +   + +E    + +   R   ++     +    
Sbjct: 113 SLLDVLGHPGMNHQVELHSGVLAEECAAMLSDFFRMRREQKKALRQAQRQ 162


>gi|326560079|gb|EGE10469.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis 46P47B1]
 gi|326561665|gb|EGE12002.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis 103P14B1]
 gi|326565806|gb|EGE15968.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis BC1]
 gi|326570459|gb|EGE20499.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis BC8]
 gi|326573436|gb|EGE23404.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis 101P30B1]
          Length = 181

 Score = 92.6 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 54/148 (36%), Gaps = 31/148 (20%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
            S  D   M+ AL  ++           V  ++V +G ++G G     T      HAE+ 
Sbjct: 21  WSMRDVEMMNRALEIAKQGAKF--GEIPVGAVVVYEGRILGEGYNCPITTQDPTAHAEIV 78

Query: 59  ALEEAGE------EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           A+  A E        +G   YVTLEPC        C   +I   I RVV    +P     
Sbjct: 79  AVRRACETLNNYRLPKGCILYVTLEPC------TMCFGALIHARISRVVFGAFEPK---- 128

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHA 140
                     G++V ++   E   + H 
Sbjct: 129 ---------AGVVVSQLKLPEQVFYNHH 147


>gi|188533151|ref|YP_001906948.1| tRNA-specific adenosine deaminase [Erwinia tasmaniensis Et1/99]
 gi|188028193|emb|CAO96051.1| tRNA-specific adenosine deaminase [Erwinia tasmaniensis Et1/99]
          Length = 186

 Score = 92.6 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 57/150 (38%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M  AL+ +R           V  ++V DG VIG G     G      HAE+ AL +
Sbjct: 26  DEYWMRHALQLARRAWN--EGEVPVGAVLVLDGQVIGEGWNRPIGHHDPTAHAEMMALRQ 83

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            G+          T YVTLEPC        CA  ++   + R+V    D     +G  L 
Sbjct: 84  GGKVIENYRLMDTTLYVTLEPC------VMCAGAMVHGRVGRLVYGARDAKTGAAGSLLD 137

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYL 142
            L   G+     +   ++  E    L  + 
Sbjct: 138 VLGHPGMNHRVRVDCGVLADECAAMLSEFF 167


>gi|323978411|gb|EGB73496.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Escherichia coli TW10509]
          Length = 167

 Score = 92.6 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 60/167 (35%), Gaps = 21/167 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL + 
Sbjct: 9   EYWMRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQG 66

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +      AT YVTLEPC        CA  +I   I RVV    D     +G  +  
Sbjct: 67  GLVMQNYRLIDATLYVTLEPC------VMCAGAMIHSRISRVVFGARDAKTGAAGSLMDV 120

Query: 119 LSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           L   G    + +   + ++    L +   R   +      K   S D
Sbjct: 121 LHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD 167


>gi|126175184|ref|YP_001051333.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica OS155]
 gi|125998389|gb|ABN62464.1| tRNA-adenosine deaminase [Shewanella baltica OS155]
          Length = 175

 Score = 92.6 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 55/156 (35%), Gaps = 22/156 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
            S  D ++M  A+  +            V  ++VKDG  I  G       +    HAE+ 
Sbjct: 9   QSEQDEQWMQVAMLMAEKAE--AEGEVPVGAVLVKDGQQIATGYNLSISQHDPSAHAEIL 66

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            L EAG          AT YVTLEPC+       CA  ++   I RVV    D     +G
Sbjct: 67  CLREAGRLVENYRLLDATLYVTLEPCAM------CAGAMVHSRIARVVFGARDEKTGAAG 120

Query: 114 RGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTR 144
             +  L          +   ++       L  +  R
Sbjct: 121 TVVNLLQHPAFNHQVEVTSGVLADACSAQLSRFFKR 156


>gi|320176139|gb|EFW51206.1| tRNA-specific adenosine-34 deaminase [Shigella dysenteriae CDC
           74-1112]
          Length = 178

 Score = 92.6 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 59/167 (35%), Gaps = 21/167 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL + 
Sbjct: 20  EYWMRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQG 77

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +      AT YVTLEPC        CA  +    I RVV    D     +G  +  
Sbjct: 78  GLVMQNYRLIDATLYVTLEPC------VMCAGAMTHSRIGRVVFGARDAKTGAAGSLMDV 131

Query: 119 LSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           L   G    + +   + ++    L +   R   +      K   S D
Sbjct: 132 LHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD 178


>gi|257416518|ref|ZP_05593512.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis AR01/DG]
 gi|257158346|gb|EEU88306.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis ARO1/DG]
          Length = 173

 Score = 92.6 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 22/151 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
             FM  A+  ++   GL      +  +IV+ G +IGRG            HAE+ A++EA
Sbjct: 14  EFFMREAIAEAKKAEGLAEV--PIGAVIVRQGEIIGRGHNLREARQEATSHAEMYAIQEA 71

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                         +VTLEPC      P C+  ++   I  V     DP    +G  +  
Sbjct: 72  CRGIENWRLEETQLFVTLEPC------PMCSGAMLLARIPEVYYGATDPKAGTAGTLMNL 125

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTR 144
           L          +   ++E E ++ L  +  +
Sbjct: 126 LEDERFNHVAYVEAGVLEEECRLLLVQFFKK 156


>gi|226328060|ref|ZP_03803578.1| hypothetical protein PROPEN_01951 [Proteus penneri ATCC 35198]
 gi|225203764|gb|EEG86118.1| hypothetical protein PROPEN_01951 [Proteus penneri ATCC 35198]
          Length = 176

 Score = 92.6 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 22/156 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           M     D  +M  A+  +     +      V  ++V D  +I +G            HAE
Sbjct: 1   MNKVKDDIYWMHKAIEQAHKAQEI--GEIPVGAVLVVDNKIIAKGWNHSIIDNDPTAHAE 58

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL + G+  +      AT Y+TLEPC        CA  I+   ++RVV    D     
Sbjct: 59  IMALRKGGKHLQNYRLLDATLYITLEPC------VMCAGAIVHSRVKRVVYGASDLKTGA 112

Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
           +G  +  L   G+     I   ++  E    L  + 
Sbjct: 113 AGSFIDILQHPGMNHKVEITSGVLGEECSQLLSQFF 148


>gi|288942407|ref|YP_003444647.1| CMP/dCMP deaminase protein [Allochromatium vinosum DSM 180]
 gi|288897779|gb|ADC63615.1| CMP/dCMP deaminase zinc-binding protein [Allochromatium vinosum DSM
           180]
          Length = 166

 Score = 92.6 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 17/131 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57
             +  D  +M  AL  +R           V  ++V++G ++G G       +    HAE+
Sbjct: 4   TFADADVHWMRHALELAR--CAAEEGEVPVGAVLVREGEILGEGWNRPIIRHDPSAHAEI 61

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           QAL +AG         G+  YVTLEPC        CA  I+   + +V+    DP     
Sbjct: 62  QALRDAGRRVGNYRLPGSILYVTLEPC------VMCAGAIVHARVAQVIYGAPDPKAGAC 115

Query: 113 GRGLQWLSQKG 123
           G     L   G
Sbjct: 116 GSVFDLLPSDG 126


>gi|74313082|ref|YP_311501.1| tRNA-specific adenosine deaminase [Shigella sonnei Ss046]
 gi|73856559|gb|AAZ89266.1| putative deaminase [Shigella sonnei Ss046]
 gi|323169455|gb|EFZ55128.1| tRNA-specific adenosine deaminase [Shigella sonnei 53G]
          Length = 178

 Score = 92.6 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 60/167 (35%), Gaps = 21/167 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL + 
Sbjct: 20  EYWMRHALTLAKRAWDERE--VPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQG 77

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +      AT YVTLEPC        CA  +I   I RVV    D     +G  +  
Sbjct: 78  GLVMQNYRLIDATLYVTLEPC------VMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDV 131

Query: 119 LSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           L   G    + +   + ++    L +   R   +      K   S D
Sbjct: 132 LHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIKAQKKAQPSTD 178


>gi|254479893|ref|ZP_05093141.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [marine gamma proteobacterium HTCC2148]
 gi|214039455|gb|EEB80114.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [marine gamma proteobacterium HTCC2148]
          Length = 153

 Score = 92.6 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 17/130 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
           M  ++   ++M  AL  +    G     P +  +IVKDG ++G G  +         HAE
Sbjct: 1   MTSTAEHEQWMRRALALADRA-GNEGEVP-IGAVIVKDGQLLGEGWNSVIAFKDPTAHAE 58

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           V A+ +A +        G+T YVTLEPC        CA  +I   +  +V    +P   V
Sbjct: 59  VVAMRDAAQMTGNYRLPGSTVYVTLEPC------TMCAGAMIHARVAELVFAAKEPKAGV 112

Query: 112 SGRGLQWLSQ 121
                  L +
Sbjct: 113 VCSTCSLLDE 122


>gi|257056391|ref|YP_003134223.1| pyrimidine reductase, riboflavin biosynthesis [Saccharomonospora
           viridis DSM 43017]
 gi|256586263|gb|ACU97396.1| pyrimidine reductase, riboflavin biosynthesis [Saccharomonospora
           viridis DSM 43017]
          Length = 258

 Score = 92.6 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 19/206 (9%)

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           Y       R  + +    S D  + ++   +  ++    K    L R  +D ILVG GT 
Sbjct: 27  YDYPPDLARPWVQVNFVSSADGAVSVSDRSA-GLSHPADKRVFGLGRDLADVILVGAGTA 85

Query: 201 LADD---------PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251
            A+               R  GL E  P+ ++      L+ D  ++   ++ P+++ T+ 
Sbjct: 86  RAERYRGVKAHELRLERRRRLGLSELPPIAVV-TGRCDLTPDDPLVTDTIVPPLVLTTQR 144

Query: 252 DDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
                  A  +  ++++    +  D +  L  L  RG+  +  EGG  +  + + + LVD
Sbjct: 145 APRHRKDALTEAGVDVVEAGEETVDPRLALAALDERGLRRVDCEGGPRLFAALVAADLVD 204

Query: 310 SIILYRSQIVIGEG------GIPSPL 329
            + L  + ++ G G      G+PSPL
Sbjct: 205 QLCLTIAPLLAGAGADRIVTGVPSPL 230


>gi|56418551|ref|YP_145869.1| hypothetical protein GK0016 [Geobacillus kaustophilus HTA426]
 gi|261417515|ref|YP_003251197.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. Y412MC61]
 gi|297528391|ref|YP_003669666.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. C56-T3]
 gi|319765173|ref|YP_004130674.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. Y412MC52]
 gi|56378393|dbj|BAD74301.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
 gi|261373972|gb|ACX76715.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. Y412MC61]
 gi|297251643|gb|ADI25089.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. C56-T3]
 gi|317110039|gb|ADU92531.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. Y412MC52]
          Length = 165

 Score = 92.6 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 62/154 (40%), Gaps = 22/154 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
           + D  +M  A+  ++    +      +  +IV+DG VI R      T      HAE+ A+
Sbjct: 2   NTDEYYMRLAMEEAKKAEQI--GEVPIGAVIVQDGRVIARAHNLRETEQRAIAHAEILAI 59

Query: 61  EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA           AT YVTLEPC+       CA  I+   I RVV    DP    +G  
Sbjct: 60  DEACRATGSWRLERATLYVTLEPCAM------CAGAIVLSRIERVVFGAFDPKGGCAGTL 113

Query: 116 LQWLSQKGI-----IVDRMMESEGKIFLHAYLTR 144
           +  L +        +V  ++  E    L  +  R
Sbjct: 114 MNLLQESRFNHQVKVVSGVLADECGSLLSQFFRR 147


>gi|47092339|ref|ZP_00230130.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           monocytogenes str. 4b H7858]
 gi|226225270|ref|YP_002759377.1| hypothetical protein Lm4b_02693 [Listeria monocytogenes Clip81459]
 gi|254824916|ref|ZP_05229917.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL
           J1-194]
 gi|255520888|ref|ZP_05388125.1| hypothetical protein LmonocFSL_06656 [Listeria monocytogenes FSL
           J1-175]
 gi|47019318|gb|EAL10060.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           monocytogenes str. 4b H7858]
 gi|225877732|emb|CAS06447.1| Conserved hypothetical proteins [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|293594156|gb|EFG01917.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL
           J1-194]
 gi|328468199|gb|EGF39205.1| hypothetical protein LM1816_02662 [Listeria monocytogenes 1816]
          Length = 156

 Score = 92.6 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 60/152 (39%), Gaps = 26/152 (17%)

Query: 8   ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
           A FM  AL  +      G       +  ++V DG +IGR      T+     HAE+ A++
Sbjct: 4   AFFMQQALEEAEKARDIGEV----PIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQ 59

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           +A +        GA  YVTLEPC      P C+  I+   I +V     DP    +G  +
Sbjct: 60  DACKHQNSWRLSGAELYVTLEPC------PMCSGAILLSRIEKVYYGAKDPKAGTAGSLM 113

Query: 117 QWLS-----QKGIIVDRMMESEGKIFLHAYLT 143
             L          +   +ME E    L ++  
Sbjct: 114 NLLQDDRFNHTCEVEAGLMEKESSEMLRSFFQ 145


>gi|24113886|ref|NP_708396.1| tRNA-specific adenosine deaminase [Shigella flexneri 2a str. 301]
 gi|30063946|ref|NP_838117.1| tRNA-specific adenosine deaminase [Shigella flexneri 2a str. 2457T]
 gi|82545011|ref|YP_408958.1| tRNA-specific adenosine deaminase [Shigella boydii Sb227]
 gi|89109365|ref|AP_003145.1| tRNA-specific adenosine deaminase [Escherichia coli str. K-12
           substr. W3110]
 gi|157162036|ref|YP_001459354.1| tRNA-specific adenosine deaminase [Escherichia coli HS]
 gi|187730453|ref|YP_001881338.1| tRNA-specific adenosine deaminase [Shigella boydii CDC 3083-94]
 gi|188496019|ref|ZP_03003289.1| tRNA-specific adenosine deaminase [Escherichia coli 53638]
 gi|209920038|ref|YP_002294122.1| tRNA-specific adenosine deaminase [Escherichia coli SE11]
 gi|218547914|ref|YP_002381705.1| tRNA-specific adenosine deaminase [Escherichia fergusonii ATCC
           35469]
 gi|218555084|ref|YP_002387997.1| tRNA-specific adenosine deaminase [Escherichia coli IAI1]
 gi|218696186|ref|YP_002403853.1| tRNA-specific adenosine deaminase [Escherichia coli 55989]
 gi|254162534|ref|YP_003045642.1| tRNA-specific adenosine deaminase [Escherichia coli B str. REL606]
 gi|256017292|ref|ZP_05431157.1| tRNA-specific adenosine deaminase [Shigella sp. D9]
 gi|293410974|ref|ZP_06654550.1| tRNA-specific adenosine deaminase [Escherichia coli B354]
 gi|300817664|ref|ZP_07097879.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 107-1]
 gi|300820763|ref|ZP_07100913.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 119-7]
 gi|300904258|ref|ZP_07122117.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 84-1]
 gi|300920727|ref|ZP_07137133.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 115-1]
 gi|300927064|ref|ZP_07142816.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 182-1]
 gi|300927685|ref|ZP_07143253.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 187-1]
 gi|300951723|ref|ZP_07165542.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 116-1]
 gi|300958800|ref|ZP_07170912.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 175-1]
 gi|301022068|ref|ZP_07185995.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 196-1]
 gi|301024846|ref|ZP_07188483.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 69-1]
 gi|301302925|ref|ZP_07209053.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 124-1]
 gi|301330339|ref|ZP_07222986.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 78-1]
 gi|301648323|ref|ZP_07248063.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 146-1]
 gi|312973195|ref|ZP_07787367.1| tRNA-specific adenosine deaminase [Escherichia coli 1827-70]
 gi|331643182|ref|ZP_08344317.1| tRNA-specific adenosine deaminase [Escherichia coli H736]
 gi|331664126|ref|ZP_08365036.1| tRNA-specific adenosine deaminase [Escherichia coli TA143]
 gi|331669308|ref|ZP_08370156.1| tRNA-specific adenosine deaminase [Escherichia coli TA271]
 gi|331678554|ref|ZP_08379229.1| tRNA-specific adenosine deaminase [Escherichia coli H591]
 gi|331684208|ref|ZP_08384804.1| tRNA-specific adenosine deaminase [Escherichia coli H299]
 gi|332278286|ref|ZP_08390699.1| tRNA-specific adenosine deaminase [Shigella sp. D9]
 gi|296183|emb|CAA51064.1| unnamed protein product [Escherichia coli]
 gi|987637|dbj|BAA10909.1| YFHC-ECOLI protein [Escherichia coli K-12]
 gi|1033148|gb|AAA79821.1| alternate name yfhC; orf178 of GenBank Accession Number X72336
           [Escherichia coli str. K-12 substr. MG1655]
 gi|24052985|gb|AAN44103.1| putative deaminase [Shigella flexneri 2a str. 301]
 gi|30042202|gb|AAP17927.1| putative deaminase [Shigella flexneri 2a str. 2457T]
 gi|81246422|gb|ABB67130.1| putative deaminase [Shigella boydii Sb227]
 gi|85675450|dbj|BAE76735.1| tRNA-specific adenosine deaminase [Escherichia coli str. K12
           substr. W3110]
 gi|157067716|gb|ABV06971.1| tRNA-specific adenosine deaminase [Escherichia coli HS]
 gi|187427445|gb|ACD06719.1| tRNA-specific adenosine deaminase [Shigella boydii CDC 3083-94]
 gi|188491218|gb|EDU66321.1| tRNA-specific adenosine deaminase [Escherichia coli 53638]
 gi|209913297|dbj|BAG78371.1| putative deaminase [Escherichia coli SE11]
 gi|218352918|emb|CAU98717.1| tRNA-specific adenosine deaminase [Escherichia coli 55989]
 gi|218355455|emb|CAQ88064.1| tRNA-specific adenosine deaminase [Escherichia fergusonii ATCC
           35469]
 gi|218361852|emb|CAQ99452.1| tRNA-specific adenosine deaminase [Escherichia coli IAI1]
 gi|253974435|gb|ACT40106.1| tRNA-specific adenosine deaminase [Escherichia coli B str. REL606]
 gi|253978602|gb|ACT44272.1| tRNA-specific adenosine deaminase [Escherichia coli BL21(DE3)]
 gi|281601959|gb|ADA74943.1| tRNA-specific adenosine deaminase [Shigella flexneri 2002017]
 gi|291471442|gb|EFF13926.1| tRNA-specific adenosine deaminase [Escherichia coli B354]
 gi|299881373|gb|EFI89584.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 196-1]
 gi|300314548|gb|EFJ64332.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 175-1]
 gi|300396377|gb|EFJ79915.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 69-1]
 gi|300403791|gb|EFJ87329.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 84-1]
 gi|300412298|gb|EFJ95608.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 115-1]
 gi|300416948|gb|EFK00259.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 182-1]
 gi|300449007|gb|EFK12627.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 116-1]
 gi|300464238|gb|EFK27731.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 187-1]
 gi|300526516|gb|EFK47585.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 119-7]
 gi|300529652|gb|EFK50714.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 107-1]
 gi|300841860|gb|EFK69620.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 124-1]
 gi|300843673|gb|EFK71433.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 78-1]
 gi|301073599|gb|EFK88405.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 146-1]
 gi|309702891|emb|CBJ02222.1| tRNA-specific adenosine deaminase [Escherichia coli ETEC H10407]
 gi|310331790|gb|EFP99025.1| tRNA-specific adenosine deaminase [Escherichia coli 1827-70]
 gi|315137183|dbj|BAJ44342.1| tRNA-specific adenosine deaminase [Escherichia coli DH1]
 gi|315256586|gb|EFU36554.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 85-1]
 gi|315615821|gb|EFU96453.1| tRNA-specific adenosine deaminase [Escherichia coli 3431]
 gi|320196395|gb|EFW71019.1| tRNA-specific adenosine-34 deaminase [Escherichia coli WV_060327]
 gi|323156217|gb|EFZ42376.1| tRNA-specific adenosine deaminase [Escherichia coli EPECa14]
 gi|323170158|gb|EFZ55811.1| tRNA-specific adenosine deaminase [Escherichia coli LT-68]
 gi|323177311|gb|EFZ62899.1| tRNA-specific adenosine deaminase [Escherichia coli 1180]
 gi|323184561|gb|EFZ69935.1| tRNA-specific adenosine deaminase [Escherichia coli 1357]
 gi|324020017|gb|EGB89236.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 117-3]
 gi|325496361|gb|EGC94220.1| tRNA-specific adenosine deaminase [Escherichia fergusonii ECD227]
 gi|331039980|gb|EGI12200.1| tRNA-specific adenosine deaminase [Escherichia coli H736]
 gi|331059925|gb|EGI31902.1| tRNA-specific adenosine deaminase [Escherichia coli TA143]
 gi|331064502|gb|EGI36413.1| tRNA-specific adenosine deaminase [Escherichia coli TA271]
 gi|331075014|gb|EGI46334.1| tRNA-specific adenosine deaminase [Escherichia coli H591]
 gi|331079160|gb|EGI50362.1| tRNA-specific adenosine deaminase [Escherichia coli H299]
 gi|332100638|gb|EGJ03984.1| tRNA-specific adenosine deaminase [Shigella sp. D9]
 gi|333000545|gb|EGK20124.1| tRNA-specific adenosine deaminase [Shigella flexneri VA-6]
          Length = 178

 Score = 92.6 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 60/167 (35%), Gaps = 21/167 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL + 
Sbjct: 20  EYWMRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQG 77

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +      AT YVTLEPC        CA  +I   I RVV    D     +G  +  
Sbjct: 78  GLVMQNYRLIDATLYVTLEPC------VMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDV 131

Query: 119 LSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           L   G    + +   + ++    L +   R   +      K   S D
Sbjct: 132 LHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD 178


>gi|114562317|ref|YP_749830.1| CMP/dCMP deaminase, zinc-binding [Shewanella frigidimarina NCIMB
           400]
 gi|114333610|gb|ABI70992.1| tRNA-adenosine deaminase [Shewanella frigidimarina NCIMB 400]
          Length = 189

 Score = 92.6 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 61/154 (39%), Gaps = 22/154 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
           + D ++M  A++ +            V  ++VKD ++I  G       +    HAE++ +
Sbjct: 30  AIDEKWMRLAMQLAEQAEL--KGEVPVGAVLVKDDVLIASGCNLSIVNHDPTAHAEMECI 87

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +AG+          T YVTLEPC        CA  ++   I RVV   DD     +G  
Sbjct: 88  RQAGKVLENYRMLDTTLYVTLEPC------TMCAGAMVHSRITRVVYGADDLKTGAAGSV 141

Query: 116 LQWLSQKGI-----IVDRMMESEGKIFLHAYLTR 144
           +  L          +   ++ +E    L A+  R
Sbjct: 142 INLLQHPVFNHQLEVSSGVLAAECGAQLSAFFQR 175


>gi|238762806|ref|ZP_04623775.1| tRNA-specific adenosine deaminase [Yersinia kristensenii ATCC
           33638]
 gi|238699111|gb|EEP91859.1| tRNA-specific adenosine deaminase [Yersinia kristensenii ATCC
           33638]
          Length = 194

 Score = 92.6 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 54/132 (40%), Gaps = 17/132 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P+   D  +M  AL  +            V  ++V D  VIG G     G      HAE+
Sbjct: 25  PIEYSDEYWMQRALVLALRAQ--AEGEVPVGAILVLDNQVIGEGWNRSIGDNDPTAHAEI 82

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL + G+  +      AT YVTLEPC        CA  ++   IRR+V   +D     +
Sbjct: 83  MALRQGGQAVQNYRLIDATLYVTLEPC------VMCAGAMVHSRIRRLVYGANDLKTGAA 136

Query: 113 GRGLQWLSQKGI 124
           G  +  L   G+
Sbjct: 137 GSLVDILRHPGM 148


>gi|326577134|gb|EGE27028.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis O35E]
          Length = 181

 Score = 92.6 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 53/147 (36%), Gaps = 31/147 (21%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
            S  D   M+ AL  ++           V  ++V +G ++G G     T      HAE+ 
Sbjct: 21  WSMRDVEMMNRALEIAKQGAKF--GEIPVGAVVVYEGRILGEGYNCPITTQDPTAHAEIV 78

Query: 59  ALEEAGE------EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           A+  A E        +G   YVTLEPC        C   +I   I  VV    +P     
Sbjct: 79  AVRRACETLNNYRLPKGCILYVTLEPC------TMCFGALIHARISHVVFGAFEPK---- 128

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLH 139
                     G+++ ++   E   + H
Sbjct: 129 ---------AGVVISQLKLPEQAFYNH 146


>gi|170019158|ref|YP_001724112.1| tRNA-specific adenosine deaminase [Escherichia coli ATCC 8739]
 gi|169754086|gb|ACA76785.1| CMP/dCMP deaminase zinc-binding [Escherichia coli ATCC 8739]
          Length = 167

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 60/167 (35%), Gaps = 21/167 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL + 
Sbjct: 9   EYWMRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQG 66

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +      AT YVTLEPC        CA  +I   I RVV    D     +G  +  
Sbjct: 67  GLVMQNYRLIDATLYVTLEPC------VMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDV 120

Query: 119 LSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           L   G    + +   + ++    L +   R   +      K   S D
Sbjct: 121 LHHSGMNHRVEITEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD 167


>gi|315146338|gb|EFT90354.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX4244]
          Length = 173

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 22/151 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  A+  ++   GL      +  +IV+ G +IGRG            HAE+ A++EA
Sbjct: 14  EFFMREAIAEAKKAEGLAEV--PIGAVIVRQGEIIGRGHNLREARHEATAHAEMYAIQEA 71

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                         +VTLEPC      P C+  ++   I  V     DP    +G  +  
Sbjct: 72  CRGIENWRLEETQLFVTLEPC------PMCSGAMLLARIPEVYYGATDPKAGTAGTLMNL 125

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTR 144
           L          +   ++E E ++ L  +  +
Sbjct: 126 LEDERFNHVAYVEAGVLEEECRLLLVQFFKK 156


>gi|157157409|ref|YP_001463881.1| tRNA-specific adenosine deaminase [Escherichia coli E24377A]
 gi|193064070|ref|ZP_03045155.1| tRNA-specific adenosine deaminase [Escherichia coli E22]
 gi|194427252|ref|ZP_03059802.1| tRNA-specific adenosine deaminase [Escherichia coli B171]
 gi|293446913|ref|ZP_06663335.1| yfhC [Escherichia coli B088]
 gi|309794388|ref|ZP_07688811.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 145-7]
 gi|157079439|gb|ABV19147.1| tRNA-specific adenosine deaminase [Escherichia coli E24377A]
 gi|192929305|gb|EDV82914.1| tRNA-specific adenosine deaminase [Escherichia coli E22]
 gi|194414573|gb|EDX30845.1| tRNA-specific adenosine deaminase [Escherichia coli B171]
 gi|195183132|dbj|BAG66679.1| putative deaminase [Escherichia coli O111:H-]
 gi|291323743|gb|EFE63171.1| yfhC [Escherichia coli B088]
 gi|308121844|gb|EFO59106.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 145-7]
 gi|323159237|gb|EFZ45226.1| tRNA-specific adenosine deaminase [Escherichia coli E128010]
          Length = 178

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 60/167 (35%), Gaps = 21/167 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL + 
Sbjct: 20  EYWMRHALTLAKRAWDERE--VPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQG 77

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +      AT YVTLEPC        CA  +I   I RVV    D     +G  +  
Sbjct: 78  GLVMQNYRLIDATLYVTLEPC------VMCAGAMIHSRIGRVVFGAHDAKTGAAGSLMDV 131

Query: 119 LSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           L   G    + +   + ++    L +   R   +      K   S D
Sbjct: 132 LHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD 178


>gi|77460805|ref|YP_350312.1| tRNA-adenosine deaminase [Pseudomonas fluorescens Pf0-1]
 gi|77384808|gb|ABA76321.1| putative deaminase [Pseudomonas fluorescens Pf0-1]
          Length = 165

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 61/152 (40%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
           S D  FM  AL  +     L      V  ++V+DG +IGRG            HAE+ A+
Sbjct: 13  SRDRDFMREALELAAQGAAL--GEVPVGAVLVQDGEIIGRGFNCPISTSDPSAHAEMVAI 70

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A +        G+T YVTLEPCS       CA  I+   + RVV    +P   +    
Sbjct: 71  RAAAQAVDNYRLPGSTLYVTLEPCSM------CAGLIVHSRVSRVVFGALEPKAGIVQSQ 124

Query: 116 LQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
            Q     +L+ + +    ++  E    L  + 
Sbjct: 125 GQFFTQGFLNHRVLYEGGVLAEECGAVLTEFF 156


>gi|237732543|ref|ZP_04563024.1| tRNA-specific adenosine deaminase [Citrobacter sp. 30_2]
 gi|226908082|gb|EEH94000.1| tRNA-specific adenosine deaminase [Citrobacter sp. 30_2]
          Length = 182

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 59/155 (38%), Gaps = 22/155 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL + 
Sbjct: 26  EYWMRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGHHDPTAHAEIMALRQG 83

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +      AT YVTLEPC        CA  ++   I RVV    D     +G  +  
Sbjct: 84  GLVLQNYRLLDATLYVTLEPC------VMCAGAMVHSRIGRVVFGARDAKTGAAGSLMDV 137

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYLTRQVEK 148
           L   G+     + + ++  E    L  +   + ++
Sbjct: 138 LHHPGMNHRVEVTEGVLRDECATLLSDFFRMRRQE 172


>gi|125597284|gb|EAZ37064.1| hypothetical protein OsJ_21407 [Oryza sativa Japonica Group]
          Length = 1528

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 70/185 (37%), Gaps = 19/185 (10%)

Query: 7    DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
            D  FM  AL  ++    L    P V  ++V++G +I RG            HAE+  + E
Sbjct: 1328 DELFMREALHEAQRAADL-WEVP-VGAVLVQNGEIIARGCNLVEDLRDSTAHAEIVCIRE 1385

Query: 63   AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            A  + +       T YVTLEPC+       CA  I++  +  VV    +  +   G  ++
Sbjct: 1386 ASNKLKTWRLADTTLYVTLEPCAM------CAGAILQARVDTVVWGAPNKLLGADGSWVR 1439

Query: 118  WLSQKGIIV--DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
                 G     D    ++G   +H +  +   +R  ++ + +        +      P +
Sbjct: 1440 LFPGDGQTSSLDSANTNQGAGPVHPFHPKISIRRGILSAECSEIMQQFFHLRRKKQKPES 1499

Query: 176  GFISK 180
               + 
Sbjct: 1500 PPHAH 1504


>gi|319655047|ref|ZP_08009117.1| cytidine/deoxycytidylate deaminase [Bacillus sp. 2_A_57_CT2]
 gi|317393271|gb|EFV74039.1| cytidine/deoxycytidylate deaminase [Bacillus sp. 2_A_57_CT2]
          Length = 178

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 24/158 (15%)

Query: 1   MPVSSF--DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
           M  +SF  D  +M  A++ ++   GL      +  +IV +G +I R             H
Sbjct: 1   MRQASFTEDELYMQEAIKEAKLAEGL--EEVPIGAVIVLEGEIIARAHNLREVNQTAIAH 58

Query: 55  AEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AE+ A+++A +         A  YVTLEPC      P C+  II   I++VV    DP  
Sbjct: 59  AELLAIDQACKNLGTWRLENAVLYVTLEPC------PMCSGSIILSRIKKVVYGAKDPKG 112

Query: 110 RVSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
             +G  +  L       +  +V  ++E E    L ++ 
Sbjct: 113 GCAGTLMNLLQDERFNHQSEVVPGVLEEECGEMLSSFF 150


>gi|330007694|ref|ZP_08306033.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Klebsiella sp. MS 92-3]
 gi|328535375|gb|EGF61857.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Klebsiella sp. MS 92-3]
          Length = 180

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 62/169 (36%), Gaps = 22/169 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL +
Sbjct: 19  DEYWMRHALTLAKRAW--EEGEVPVGAVLVHNNQVIGEGWNRPIGRHDPTAHAEIMALRQ 76

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            G   +      AT YVTLEPC        CA  ++   I R+V    D      G  + 
Sbjct: 77  GGLVLQNYRLIDATLYVTLEPC------VMCAGAMVHSRIARLVFGARDAKTGAVGSLMD 130

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
            L   G+     I + ++       L  +   + E++  +      + +
Sbjct: 131 VLHHPGMNHRVEISEGVLAESCSAMLSDFFRWRREEKKALKKAREQTGE 179


>gi|221067789|ref|ZP_03543894.1| CMP/dCMP deaminase zinc-binding [Comamonas testosteroni KF-1]
 gi|220712812|gb|EED68180.1| CMP/dCMP deaminase zinc-binding [Comamonas testosteroni KF-1]
          Length = 463

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/125 (32%), Positives = 50/125 (40%), Gaps = 17/125 (13%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQA 59
           +S    FM  AL  +R           V  ++VKDG VIGRG      A     HAEV A
Sbjct: 5   ASVHEHFMRQALEQARCAAAC--GEVPVGAVVVKDGQVIGRGHNSPLSAQDPTAHAEVLA 62

Query: 60  LEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           L EA          G T YVTLEPC        C+  ++   +  VV    +P    +G 
Sbjct: 63  LREAARTLGNYRLEGCTLYVTLEPC------TMCSGAMLHARVDAVVYGAAEPRTGAAGS 116

Query: 115 GLQWL 119
            L   
Sbjct: 117 VLDVF 121


>gi|115468148|ref|NP_001057673.1| Os06g0489500 [Oryza sativa Japonica Group]
 gi|51535686|dbj|BAD37705.1| putative cytosine deaminase [Oryza sativa Japonica Group]
 gi|113595713|dbj|BAF19587.1| Os06g0489500 [Oryza sativa Japonica Group]
          Length = 1590

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 70/185 (37%), Gaps = 19/185 (10%)

Query: 7    DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
            D  FM  AL  ++    L    P V  ++V++G +I RG            HAE+  + E
Sbjct: 1390 DELFMREALHEAQRAADL-WEVP-VGAVLVQNGEIIARGCNLVEDLRDSTAHAEIVCIRE 1447

Query: 63   AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            A  + +       T YVTLEPC+       CA  I++  +  VV    +  +   G  ++
Sbjct: 1448 ASNKLKTWRLADTTLYVTLEPCAM------CAGAILQARVDTVVWGAPNKLLGADGSWVR 1501

Query: 118  WLSQKGIIV--DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
                 G     D    ++G   +H +  +   +R  ++ + +        +      P +
Sbjct: 1502 LFPGDGQTSSLDSANTNQGAGPVHPFHPKISIRRGILSAECSEIMQQFFHLRRKKQKPES 1561

Query: 176  GFISK 180
               + 
Sbjct: 1562 PPHAH 1566


>gi|258625208|ref|ZP_05720121.1| zinc-binding domain protein [Vibrio mimicus VM603]
 gi|258582498|gb|EEW07334.1| zinc-binding domain protein [Vibrio mimicus VM603]
          Length = 157

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 22/148 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE- 65
           M  A+  +            V  ++V+DG +I  G     T +    HAE++ + +AG+ 
Sbjct: 1   MRRAIMLAAQAE--EQGEVPVGAVLVRDGEIIAEGWNCSITHHDATAHAEIEVIRKAGKV 58

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS- 120
                    T YVTLEPC      P CA  ++   ++R+V    D     +G  +   + 
Sbjct: 59  LSNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAGTVMDLFNS 112

Query: 121 ----QKGIIVDRMMESEGKIFLHAYLTR 144
                   +   ++E E +  L A+  R
Sbjct: 113 QASYHYATVEKGLLEEECRAQLQAFFQR 140


>gi|119897879|ref|YP_933092.1| cytidine deaminase [Azoarcus sp. BH72]
 gi|119670292|emb|CAL94205.1| cytidine deaminase [Azoarcus sp. BH72]
          Length = 154

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 60/150 (40%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  FM AAL  +    G     P V  ++V +G ++GRG     G      HAEV AL +
Sbjct: 3   DEMFMRAALEQAHLA-GACDEVP-VGAVVVCEGEIVGRGFNQPIGRHDPTAHAEVMALRD 60

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A          G   YVTLEPC        C+  I+   I RVV    DP   V+G  + 
Sbjct: 61  AAARLGNYRLPGCELYVTLEPC------VMCSGAIMHARIARVVYGARDPKTGVAGSVID 114

Query: 118 W-----LSQKGIIVDRMMESEGKIFLHAYL 142
                 L+    I   ++  E    L ++ 
Sbjct: 115 LYAEGRLNHHASIEGGLLAEECGGLLSSFF 144


>gi|258653701|ref|YP_003202857.1| bifunctional deaminase-reductase domain-containing protein
           [Nakamurella multipartita DSM 44233]
 gi|258556926|gb|ACV79868.1| bifunctional deaminase-reductase domain protein [Nakamurella
           multipartita DSM 44233]
          Length = 253

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 73/223 (32%), Gaps = 12/223 (5%)

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
                   H+   +  S D    +    S  +     +    +LR  +D ILVG GTV  
Sbjct: 33  YAWPTATPHVRANMITSLDGGAAL-DGRSGGLGNEADRELFAVLRDLADVILVGAGTVRT 91

Query: 203 D-------DP-ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
           +       DP  L  R    +   P  I +     L  D  +       P++I  +    
Sbjct: 92  EQYGGIRFDPDRLARRRRWGRSKQPPPIAVVTRRGLDADLPLFTDTQTRPIVITPQAAAE 151

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
            +       +  I   D  DL   +  L  RG+  +  EGG A+    I   L+D   L 
Sbjct: 152 RVPPT---ADALIAGTDEVDLAAAVRGLADRGLGRIHCEGGPALLGDLIARDLLDECCLT 208

Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
            + +++G         +      +        G+ +   Y+ +
Sbjct: 209 IAPVLLGSAATRLLPIDLAAPVAWTPALLRIGGAHLFARYLRE 251


>gi|157144506|ref|YP_001451825.1| tRNA-specific adenosine deaminase [Citrobacter koseri ATCC BAA-895]
 gi|157081711|gb|ABV11389.1| hypothetical protein CKO_00224 [Citrobacter koseri ATCC BAA-895]
          Length = 180

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 60/167 (35%), Gaps = 22/167 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL + 
Sbjct: 22  EYWMRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGHHDPTAHAEIMALRQG 79

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +       T YVTLEPC        CA  ++   I RVV    D     +G  +  
Sbjct: 80  GLVLQNYRLLDTTLYVTLEPC------VMCAGAMVHSRIGRVVFGARDAKTGAAGSLMDV 133

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
           L   G+     I + ++  E    L  +   + ++   +      S 
Sbjct: 134 LHHPGMNHRVEITEGVLRDECAALLSDFFRMRRQEIKALKKSSQESL 180


>gi|282915881|ref|ZP_06323646.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus D139]
 gi|283769715|ref|ZP_06342607.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus H19]
 gi|282320177|gb|EFB50522.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus D139]
 gi|283459862|gb|EFC06952.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus H19]
          Length = 156

 Score = 91.9 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 58/150 (38%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  FM+ A+  ++    L      +  +I KD  VI R      T      HAE  A+E 
Sbjct: 4   DIYFMTLAIEEAKKAARL--GEVPIGAVITKDDEVIARAHNLRETLQQPTAHAEHIAIER 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +        G T YVTLEPC        CA  I+   I RVV   DDP    SG  + 
Sbjct: 62  AAKVLGSWRLEGCTLYVTLEPC------VMCAGTIVMSRIPRVVYGADDPKGGCSGSLMN 115

Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYL 142
            L       + I+   +++      L  + 
Sbjct: 116 LLQQSNFNHRAIVDKGVLKEACSTLLTTFF 145


>gi|227552392|ref|ZP_03982441.1| nucleoside deaminase [Enterococcus faecium TX1330]
 gi|257888367|ref|ZP_05668020.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,141,733]
 gi|257896743|ref|ZP_05676396.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium Com12]
 gi|293378075|ref|ZP_06624251.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecium PC4.1]
 gi|227178480|gb|EEI59452.1| nucleoside deaminase [Enterococcus faecium TX1330]
 gi|257824421|gb|EEV51353.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,141,733]
 gi|257833308|gb|EEV59729.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium Com12]
 gi|292643330|gb|EFF61464.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecium PC4.1]
          Length = 171

 Score = 91.9 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 26/160 (16%)

Query: 1   MPVSSFD----ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGC 52
           M  ++ D     ++M  AL  ++    L      +  ++V +G VIG+G     T     
Sbjct: 1   MVNTNLDAVDKEKWMRLALAEAKKAEVLHEV--PIGAVVVLEGEVIGKGYNLRETTQDAT 58

Query: 53  PHAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
            HAE+ A++EA E+        A+ +VTLEPC      P C+  +I   +  V     DP
Sbjct: 59  THAEMLAIKEACEKVGSWRLENASLFVTLEPC------PMCSGAMILSRVAEVYFGAYDP 112

Query: 108 DVRVSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
               +G  +  L       +  +   ++E E    L  + 
Sbjct: 113 KGGTAGTLMNLLEDERFNHQAYVEGGILEDECGRVLTDFF 152


>gi|78047755|ref|YP_363930.1| putative cytidine / deoxycytidylate deaminase family protein
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78036185|emb|CAJ23876.1| putative cytidine / deoxycytidylate deaminase family protein
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 169

 Score = 91.9 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 65/164 (39%), Gaps = 22/164 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHAE 56
           P ++ D  +M  AL+ +          P V  L+V   G V+G G      ++    HAE
Sbjct: 10  PHAAIDEHWMRHALQLAERAERDYDEIP-VGALLVDAQGNVLGEGWNFNIASHDPSAHAE 68

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ EAG         G T YVTLEPC+       CA  +I   I RVV    DP    
Sbjct: 69  IVAMREAGRRLANHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGA 122

Query: 112 SGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
            G     L+      +  +   ++ +E  + L  Y   +  K  
Sbjct: 123 CGSVFDLLADPRHNHRVQVCGGVLAAEASLRLTNYFRAKRGKPP 166


>gi|153815558|ref|ZP_01968226.1| hypothetical protein RUMTOR_01794 [Ruminococcus torques ATCC 27756]
 gi|317502188|ref|ZP_07960362.1| tRNA-specific adenosine deaminase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088753|ref|ZP_08337663.1| hypothetical protein HMPREF1025_01246 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847200|gb|EDK24118.1| hypothetical protein RUMTOR_01794 [Ruminococcus torques ATCC 27756]
 gi|316896397|gb|EFV18494.1| tRNA-specific adenosine deaminase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330407276|gb|EGG86779.1| hypothetical protein HMPREF1025_01246 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 162

 Score = 91.9 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 22/151 (14%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE----- 56
            D ++M AA++ ++    +  T   + C+IV +G +IGRG     T      HAE     
Sbjct: 9   LDEKYMRAAIKQAQKAYAINET--PIGCVIVYEGKIIGRGYNRRNTDKDPLAHAEIKAIK 66

Query: 57  VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
             + +         T YVTLEPC        CA  II+  + RVVV   +P    +G  L
Sbjct: 67  KASKKMGDWRLEQCTMYVTLEPCQM------CAGAIIQSRLTRVVVGCMNPKAGCAGSVL 120

Query: 117 QWL-----SQKGIIVDRMMESEGKIFLHAYL 142
             L     + +  +   ++E E    +  + 
Sbjct: 121 NLLDIKQFNHQAELTTGVLEEECSALMTGFF 151


>gi|90108580|pdb|1Z3A|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From
           Escherichia Coli
 gi|90108581|pdb|1Z3A|B Chain B, Crystal Structure Of Trna Adenosine Deaminase Tada From
           Escherichia Coli
          Length = 168

 Score = 91.9 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 60/167 (35%), Gaps = 21/167 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL + 
Sbjct: 10  EYWMRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQG 67

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +      AT YVTLEPC        CA  +I   I RVV    D     +G  +  
Sbjct: 68  GLVMQNYRLIDATLYVTLEPC------VMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDV 121

Query: 119 LSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           L   G    + +   + ++    L +   R   +      K   S D
Sbjct: 122 LHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD 168


>gi|228963119|ref|ZP_04124290.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228796575|gb|EEM44012.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 195

 Score = 91.9 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ A+
Sbjct: 4   DRDIYFMQLAIEEAKKAEEMQE--VPIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  
Sbjct: 62  DEACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTL 115

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +  L     + +  +V  ++E E    L  + 
Sbjct: 116 MNLLTDERFNHQCEVVTGVLEEECGTLLTNFF 147


>gi|145698301|ref|NP_417054.2| tRNA-specific adenosine deaminase [Escherichia coli str. K-12
           substr. MG1655]
 gi|170082169|ref|YP_001731489.1| tRNA-specific adenosine deaminase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170682913|ref|YP_001744748.1| tRNA-specific adenosine deaminase [Escherichia coli SMS-3-5]
 gi|191167978|ref|ZP_03029780.1| tRNA-specific adenosine deaminase [Escherichia coli B7A]
 gi|194437606|ref|ZP_03069702.1| tRNA-specific adenosine deaminase [Escherichia coli 101-1]
 gi|238901724|ref|YP_002927520.1| tRNA-specific adenosine deaminase [Escherichia coli BW2952]
 gi|253772543|ref|YP_003035374.1| tRNA-specific adenosine deaminase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|256021756|ref|ZP_05435621.1| tRNA-specific adenosine deaminase [Escherichia sp. 4_1_40B]
 gi|260856653|ref|YP_003230544.1| tRNA-specific adenosine deaminase [Escherichia coli O26:H11 str.
           11368]
 gi|260869246|ref|YP_003235648.1| tRNA-specific adenosine deaminase [Escherichia coli O111:H- str.
           11128]
 gi|297516926|ref|ZP_06935312.1| tRNA-specific adenosine deaminase [Escherichia coli OP50]
 gi|307139195|ref|ZP_07498551.1| tRNA-specific adenosine deaminase [Escherichia coli H736]
 gi|307313870|ref|ZP_07593486.1| CMP/dCMP deaminase zinc-binding [Escherichia coli W]
 gi|150421688|sp|P68398|TADA_ECOLI RecName: Full=tRNA-specific adenosine deaminase
 gi|150421691|sp|P68397|TADA_SHIFL RecName: Full=tRNA-specific adenosine deaminase
 gi|145693172|gb|AAC75612.2| tRNA-specific adenosine deaminase [Escherichia coli str. K-12
           substr. MG1655]
 gi|169890004|gb|ACB03711.1| tRNA-specific adenosine deaminase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170520631|gb|ACB18809.1| tRNA-specific adenosine deaminase [Escherichia coli SMS-3-5]
 gi|190901985|gb|EDV61732.1| tRNA-specific adenosine deaminase [Escherichia coli B7A]
 gi|194423412|gb|EDX39403.1| tRNA-specific adenosine deaminase [Escherichia coli 101-1]
 gi|238863717|gb|ACR65715.1| tRNA-specific adenosine deaminase [Escherichia coli BW2952]
 gi|253323587|gb|ACT28189.1| CMP/dCMP deaminase zinc-binding [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|257755302|dbj|BAI26804.1| tRNA-specific adenosine deaminase [Escherichia coli O26:H11 str.
           11368]
 gi|257765602|dbj|BAI37097.1| tRNA-specific adenosine deaminase [Escherichia coli O111:H- str.
           11128]
 gi|260448361|gb|ACX38783.1| CMP/dCMP deaminase zinc-binding protein [Escherichia coli DH1]
 gi|306906371|gb|EFN36886.1| CMP/dCMP deaminase zinc-binding [Escherichia coli W]
 gi|313651052|gb|EFS15452.1| tRNA-specific adenosine deaminase [Shigella flexneri 2a str. 2457T]
 gi|313848716|emb|CAQ32934.2| tRNA-specific adenosine deaminase monomer, subunit of tRNA-specific
           adenosine deaminase [Escherichia coli BL21(DE3)]
 gi|315061878|gb|ADT76205.1| tRNA-specific adenosine deaminase [Escherichia coli W]
 gi|320186358|gb|EFW61092.1| tRNA-specific adenosine-34 deaminase [Shigella flexneri CDC 796-83]
 gi|320200123|gb|EFW74712.1| tRNA-specific adenosine-34 deaminase [Escherichia coli EC4100B]
 gi|323377541|gb|ADX49809.1| CMP/dCMP deaminase zinc-binding protein [Escherichia coli KO11]
 gi|323936299|gb|EGB32590.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Escherichia coli E1520]
 gi|323941178|gb|EGB37363.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Escherichia coli E482]
 gi|323944616|gb|EGB40684.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Escherichia coli H120]
 gi|323961174|gb|EGB56787.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Escherichia coli H489]
 gi|323971115|gb|EGB66362.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Escherichia coli TA007]
 gi|324113086|gb|EGC07062.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Escherichia fergusonii B253]
 gi|324118231|gb|EGC12127.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Escherichia coli E1167]
 gi|332092598|gb|EGI97670.1| tRNA-specific adenosine deaminase [Shigella boydii 3594-74]
 gi|332344434|gb|AEE57768.1| tRNA-specific adenosine deaminase [Escherichia coli UMNK88]
 gi|332756134|gb|EGJ86485.1| tRNA-specific adenosine deaminase [Shigella flexneri 2747-71]
 gi|332765914|gb|EGJ96125.1| tRNA-specific adenosine deaminase monomer [Shigella flexneri
           2930-71]
 gi|333002351|gb|EGK21915.1| tRNA-specific adenosine deaminase [Shigella flexneri K-272]
 gi|333016173|gb|EGK35505.1| tRNA-specific adenosine deaminase [Shigella flexneri K-227]
 gi|333016472|gb|EGK35803.1| tRNA-specific adenosine deaminase [Shigella flexneri K-304]
          Length = 167

 Score = 91.9 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 60/167 (35%), Gaps = 21/167 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL + 
Sbjct: 9   EYWMRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQG 66

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +      AT YVTLEPC        CA  +I   I RVV    D     +G  +  
Sbjct: 67  GLVMQNYRLIDATLYVTLEPC------VMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDV 120

Query: 119 LSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           L   G    + +   + ++    L +   R   +      K   S D
Sbjct: 121 LHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD 167


>gi|288934060|ref|YP_003438119.1| CMP/dCMP deaminase zinc-binding protein [Klebsiella variicola
           At-22]
 gi|288888789|gb|ADC57107.1| CMP/dCMP deaminase zinc-binding protein [Klebsiella variicola
           At-22]
          Length = 169

 Score = 91.9 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 57/155 (36%), Gaps = 21/155 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL +
Sbjct: 8   DEYWMRHALTLAKRAW--EEGEVPVGAVLVYNNQVIGEGWNRPIGRHDPTAHAEIMALRQ 65

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            G          AT YVTLEPC        CA  ++   I R+V    D     +G  + 
Sbjct: 66  GGLVQQNYRLIDATLYVTLEPC------VMCAGAMVHSRIARLVFGARDAKTGAAGSLID 119

Query: 118 WLSQKG----IIVDRMMESEGKIFLHAYLTRQVEK 148
            L   G    + +   + +E    + +   R   +
Sbjct: 120 VLHHPGMNHRVEISEGVLAESCSTMLSDFFRWRRE 154


>gi|295702259|ref|YP_003595334.1| tRNA-specific adenosine deaminase [Bacillus megaterium DSM 319]
 gi|294799918|gb|ADF36984.1| tRNA-specific adenosine deaminase [Bacillus megaterium DSM 319]
          Length = 156

 Score = 91.9 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 62/150 (41%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D ++M  A+  +            +  +IV++  V+        T      HAE+ A++E
Sbjct: 4   DEKYMRLAIDEALKAK--DKLEVPIGAVIVQNDEVVASAYNLRETEQRSVAHAELLAIDE 61

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++ R      AT YVTLEPC      P CA  I+   ++RVV    DP    +G  L 
Sbjct: 62  ACKKLRTWRLEDATLYVTLEPC------PMCAGAIVLSRVKRVVFGAYDPKGGCAGTLLN 115

Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYL 142
            L       +  +V  M+E E    L  + 
Sbjct: 116 LLKFEKFNHQAEVVGGMLEEECGSLLTTFF 145


>gi|312196151|ref|YP_004016212.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c]
 gi|311227487|gb|ADP80342.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c]
          Length = 250

 Score = 91.9 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 73/164 (44%), Gaps = 12/164 (7%)

Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD--------PELTCRLNGLQEHSP 219
           G  S  + G   +   H LR  +D +LVG GT  A++        P    R+       P
Sbjct: 49  GGRSAALGGPGDRQIFHTLRWLADVVLVGAGTARAENYGPAIVPPPRQEARIAAGLAPVP 108

Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKK 277
              ++     +   +++   A+    +++T    PV  ++  ++  +++ C  +  +L+ 
Sbjct: 109 PIAVVSGSLAIDPGARLFGAAVRP--LLLTAASAPVERVSALREVADVVVCGDEQVELEL 166

Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           +L  L GRG++ +L EGG  +      + L+D + L  + ++ G
Sbjct: 167 VLGALAGRGLSRVLTEGGPMLHAQLAGAGLLDELCLTVAPLLAG 210


>gi|206578910|ref|YP_002237098.1| tRNA-specific adenosine deaminase [Klebsiella pneumoniae 342]
 gi|206567968|gb|ACI09744.1| tRNA-specific adenosine deaminase [Klebsiella pneumoniae 342]
          Length = 180

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 58/155 (37%), Gaps = 21/155 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL +
Sbjct: 19  DEYWMRHALTLAKRAW--KEGEVPVGAVLVYNNQVIGEGWNRPIGRHDPTAHAEIMALRQ 76

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            G   +      AT YVTLEPC        CA  ++   I R+V    D     +G  + 
Sbjct: 77  GGLVLQNYRLIDATLYVTLEPC------VMCAGAMVHSRIARLVFGARDAKTGAAGSLID 130

Query: 118 WLSQKG----IIVDRMMESEGKIFLHAYLTRQVEK 148
            L   G    + +   + +E    + +   R   +
Sbjct: 131 VLHHPGMNHRVEISEGVLAESCSTMLSDFFRWRRE 165


>gi|315173580|gb|EFU17597.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX1346]
          Length = 173

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 22/151 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
             FM  A+  ++   GL      +  +IV+ G +IGRG            HAE+ A++EA
Sbjct: 14  EFFMREAIAEAKKAEGLDEV--PIGAVIVRQGEIIGRGHNLREARQEATAHAEMYAIQEA 71

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                         +VTLEPC      P C+  ++   I  V     DP    +G  +  
Sbjct: 72  CRGIENWRLEETQLFVTLEPC------PMCSGAMLLARIPEVYYGATDPKAGTAGTLMNL 125

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTR 144
           L          +   ++E E ++ L  +  +
Sbjct: 126 LEDERFNHVAYVEAGVLEEECRLLLVQFFKK 156


>gi|110806489|ref|YP_690009.1| tRNA-specific adenosine deaminase [Shigella flexneri 5 str. 8401]
 gi|110616037|gb|ABF04704.1| putative deaminase [Shigella flexneri 5 str. 8401]
          Length = 167

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 60/167 (35%), Gaps = 21/167 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL + 
Sbjct: 9   EYWMRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQG 66

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +      AT YVTLEPC        CA  ++   I RVV    D     +G  +  
Sbjct: 67  GLVMQNYRLIDATLYVTLEPC------VMCAGAMLHSRIGRVVFGARDAKTGAAGSLMDV 120

Query: 119 LSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           L   G    + +   + ++    L +   R   +      K   S D
Sbjct: 121 LHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD 167


>gi|309390267|gb|ADO78147.1| tRNA-adenosine deaminase [Halanaerobium praevalens DSM 2228]
          Length = 154

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 57/152 (37%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
             D ++M  AL  +R           +  ++V +  V+GRG            HAE+ AL
Sbjct: 2   ENDIKYMKMALAEARKAYQRAEV--PIGAVVVCNDQVVGRGFNLREQTQDPTTHAEIIAL 59

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            EA              YVTLEPC      P CA  I++  I+R+V    DP        
Sbjct: 60  REAASNKVSWRLEDCQLYVTLEPC------PMCAGAILQSRIKRLVYGASDPKAGAVRSL 113

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
            Q L     + +  +   +ME E    L  + 
Sbjct: 114 YQLLDDNRFNHQVKVEAGIMEKESAQLLKDFF 145


>gi|153216547|ref|ZP_01950510.1| zinc-binding domain protein [Vibrio cholerae 1587]
 gi|124114222|gb|EAY33042.1| zinc-binding domain protein [Vibrio cholerae 1587]
          Length = 193

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 67/178 (37%), Gaps = 22/178 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
            S+ D +FM      +            V  ++V+DG +I  G     T +    HAE++
Sbjct: 24  FSAQDEQFMRR--AIALAAQAEAQGEVPVGAVLVRDGEIIAEGCNGSITNHDATAHAEIE 81

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            + +AG+          T YVTLEPC      P CA  ++   ++R+V    D     +G
Sbjct: 82  VIRKAGKALSNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAG 135

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM 166
             +   S         +   ++E E +  L A+  R+ ++            +    +
Sbjct: 136 TVMDLFSSQAAYHYATVEKGLLEEECRAQLQAFFQRRRKEIKAKRDAERKDAERKNKL 193


>gi|193068331|ref|ZP_03049294.1| tRNA-specific adenosine deaminase [Escherichia coli E110019]
 gi|260845189|ref|YP_003222967.1| tRNA-specific adenosine deaminase [Escherichia coli O103:H2 str.
           12009]
 gi|192958283|gb|EDV88723.1| tRNA-specific adenosine deaminase [Escherichia coli E110019]
 gi|257760336|dbj|BAI31833.1| tRNA-specific adenosine deaminase [Escherichia coli O103:H2 str.
           12009]
          Length = 167

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 60/167 (35%), Gaps = 21/167 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL + 
Sbjct: 9   EYWMRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQG 66

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +      AT YVTLEPC        CA  +I   I RVV    D     +G  +  
Sbjct: 67  GLVMQNYRLIDATLYVTLEPC------VMCAGAMIHSRIGRVVFGAHDAKTGAAGSLMDV 120

Query: 119 LSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           L   G    + +   + ++    L +   R   +      K   S D
Sbjct: 121 LHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD 167


>gi|71066051|ref|YP_264778.1| tRNA-adenosine deaminase [Psychrobacter arcticus 273-4]
 gi|71039036|gb|AAZ19344.1| tRNA-adenosine deaminase [Psychrobacter arcticus 273-4]
          Length = 195

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 18/129 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
            S  D ++M+ AL+ ++   G       V  ++V +  +IG+G     G      HAE+ 
Sbjct: 34  WSVEDIKWMTEALKLAK--QGAEREEVPVGAVLVHNQQIIGQGFNEPIGRCDATAHAEIV 91

Query: 59  ALEEAGEEARG------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           AL EA    +        T YVTLEPC        C   +I   + R+V   ++P   + 
Sbjct: 92  ALREACAHLKNYRLPLQTTLYVTLEPC------TMCIGALIHARVDRLVYSTNEPRAGMV 145

Query: 113 GRGLQWLSQ 121
           G  +   +Q
Sbjct: 146 GSQMNLAAQ 154


>gi|319399688|gb|EFV87937.1| cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Staphylococcus epidermidis FRI909]
          Length = 168

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 57/147 (38%), Gaps = 22/147 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
           +M  A++ +     L      +  +IVK+  VI R      T      HAE  A+E A E
Sbjct: 7   YMRLAIKEAHKAKAL--GEVPIGAVIVKEDQVIARAHNLRETLQQPTAHAEHIAIERASE 64

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                     T YVTLEPC        CA  II   I +VV    DP    SG  +  L 
Sbjct: 65  VVGSWRLEECTLYVTLEPC------VMCAGTIIMSRIPKVVYGATDPKGGCSGSLMNLLE 118

Query: 121 -----QKGIIVDRMMESEGKIFLHAYL 142
                 + I+   ++E E    L ++ 
Sbjct: 119 QPQFNHRAIVEKGILEEECAELLRSFF 145


>gi|229530028|ref|ZP_04419418.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae 12129(1)]
 gi|229333802|gb|EEN99288.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae 12129(1)]
          Length = 193

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 66/176 (37%), Gaps = 22/176 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
            S+ D +FM      +            V  ++V+DG +I  G     T +    HAE++
Sbjct: 24  FSAQDEQFMRR--AIALAAQAEAQGEVPVGAVLVRDGEIIAEGWNGSITNHDATAHAEIE 81

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            + +AG+          T YVTLEPC      P CA  ++   ++R+V    D     +G
Sbjct: 82  VIRKAGKALSNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAG 135

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164
             L   S         +   ++E E +  L A+  R+ ++            +   
Sbjct: 136 TVLDLFSSQAAYHYATVEKGLLEEECRAQLQAFFQRRRKEIKAKRDAERKDAERKN 191


>gi|256961376|ref|ZP_05565547.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis Merz96]
 gi|293383665|ref|ZP_06629574.1| tRNA-specific adenosine deaminase [Enterococcus faecalis R712]
 gi|293387223|ref|ZP_06631781.1| tRNA-specific adenosine deaminase [Enterococcus faecalis S613]
 gi|312906213|ref|ZP_07765225.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis DAPTO 512]
 gi|312909559|ref|ZP_07768414.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis DAPTO 516]
 gi|256951872|gb|EEU68504.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis Merz96]
 gi|291079001|gb|EFE16365.1| tRNA-specific adenosine deaminase [Enterococcus faecalis R712]
 gi|291083361|gb|EFE20324.1| tRNA-specific adenosine deaminase [Enterococcus faecalis S613]
 gi|310627859|gb|EFQ11142.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis DAPTO 512]
 gi|311290232|gb|EFQ68788.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis DAPTO 516]
          Length = 173

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 22/151 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
             FM  A+  ++   GL      +  +IV+ G +IGRG            HAE+ A++EA
Sbjct: 14  EIFMREAIAEAKKAEGLAEV--PIGAVIVRQGEIIGRGHNLREARQEATAHAEMYAIQEA 71

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                         +VTLEPC      P C+  ++   I  V     DP    +G  +  
Sbjct: 72  CRGIENWRLEETQLFVTLEPC------PMCSGAMLLARIPEVYYGATDPKAGTAGTLMNL 125

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTR 144
           L          +   ++E E ++ L  +  +
Sbjct: 126 LEDERFNHVAYVEAGVLEEECRLLLVQFFKK 156


>gi|78485955|ref|YP_391880.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Thiomicrospira crunogena XCL-2]
 gi|78364241|gb|ABB42206.1| tRNA-adenosine deaminase [Thiomicrospira crunogena XCL-2]
          Length = 166

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 63/158 (39%), Gaps = 22/158 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP--HAE 56
           +  S  D  +M+ AL  ++           V  ++VKD  +I  G         P  HAE
Sbjct: 8   LSPSEQDIFWMTHALSLAKKAEQQ--GEIPVGAVLVKDSKLIAEGWNQTIQAHDPTAHAE 65

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           V AL +AG           T YVTLEPC      P CA  ++   ++R+V+   D     
Sbjct: 66  VVALRKAGIEEENYRLNDLTLYVTLEPC------PMCAGAMVHARLKRLVIAAKDFRTGA 119

Query: 112 SGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLTR 144
           +G  +       L+ +      ++ESE    L  +  +
Sbjct: 120 AGSLINLVQEPRLNHQVKTDFGVLESEASEMLSGFFRK 157


>gi|120403479|ref|YP_953308.1| hypothetical protein Mvan_2490 [Mycobacterium vanbaalenii PYR-1]
 gi|119956297|gb|ABM13302.1| bifunctional deaminase-reductase domain protein [Mycobacterium
           vanbaalenii PYR-1]
          Length = 264

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 71/190 (37%), Gaps = 19/190 (10%)

Query: 186 LRAQSDAILVGIGTVLADD---------PELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
           LR  +D I+VG  TV  ++           L  +  G  E  P+  +L     L  D+K+
Sbjct: 72  LRDLADVIVVGAATVRVENYSGVQLGAAERLARQRRGQAEVPPVA-VLTRSGLLDRDAKL 130

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINI----IYCDCRDLKKLLTILVGRGVTSLLV 292
                + P+I+ + +               +       D  DL+  L +L  RG+  +L 
Sbjct: 131 FHLTDVPPLILTSSDAVEDTRQRLGAVAEVVDASGPAPDSVDLRTALDLLAERGLVRVLT 190

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD--- 349
           EGG  +   F    L+D + L  + +++G G        G +  +   +       D   
Sbjct: 191 EGGPGILGMFTEQDLLDELCLTVAPLLLGGGSARIVTGLGEVRSDLALL--HALTDDRGF 248

Query: 350 VCLEYIGKNL 359
           + L Y+   L
Sbjct: 249 LYLRYVRDRL 258


>gi|228956462|ref|ZP_04118260.1| hypothetical protein bthur0005_100 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228803219|gb|EEM50039.1| hypothetical protein bthur0005_100 [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 166

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 69/171 (40%), Gaps = 22/171 (12%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV DG +I        T      HAE+ A+
Sbjct: 4   DQDIYFMQLAIEEAKKAEEIQE--VPIGAVIVLDGEIISVAHNLRETEQRSIAHAELLAI 61

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           ++A ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  
Sbjct: 62  DDACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTL 115

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           +  L     + +  +V  ++E E    L  +     +KR  I      + +
Sbjct: 116 MNLLTDERFNHQCEVVSGVLEEECGTLLTNFFRELRKKRKAIKKLEKNTGN 166


>gi|322418061|ref|YP_004197284.1| CMP/dCMP deaminase zinc-binding protein [Geobacter sp. M18]
 gi|320124448|gb|ADW12008.1| CMP/dCMP deaminase zinc-binding protein [Geobacter sp. M18]
          Length = 162

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 59/154 (38%), Gaps = 22/154 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
           +   D  +M  A+  +R     +     +  +IVKDG VI RG            HAE+ 
Sbjct: 1   MKKNDHYWMGKAIDQARKAE--SIGEVPIGAVIVKDGAVIARGHNLRESKQDPAAHAELI 58

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+ +A ++       GAT YVTLEPC        C   II   + RVV    DP    +G
Sbjct: 59  AIRKAAKKLSSWRLTGATLYVTLEPC------TMCMGAIILSRLDRVVFGSYDPKGGAAG 112

Query: 114 RGLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
                     L+   ++   +   E    L  + 
Sbjct: 113 SLFDFSDDKRLNHSVVLTPGVRGEETSSMLSCFF 146


>gi|229170871|ref|ZP_04298476.1| hypothetical protein bcere0006_110 [Bacillus cereus MM3]
 gi|228612606|gb|EEK69823.1| hypothetical protein bcere0006_110 [Bacillus cereus MM3]
          Length = 166

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ AL
Sbjct: 4   DQDIYFMQLAIEEAKKAEAIQE--VPIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAL 61

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  
Sbjct: 62  DEACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTL 115

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +  L     + +  +V  ++E E    L  + 
Sbjct: 116 MNLLTDERFNHQCEVVAGVLEEECGTLLTNFF 147


>gi|332754092|gb|EGJ84463.1| tRNA-specific adenosine deaminase [Shigella flexneri 4343-70]
          Length = 178

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 59/167 (35%), Gaps = 21/167 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL + 
Sbjct: 20  EYWMRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQG 77

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +      AT YVTLEPC        CA  +I   I RVV    D      G  +  
Sbjct: 78  GLVMQNYRLIDATLYVTLEPC------VMCAGAMIHSRIGRVVFGARDAKTGAVGSLMDV 131

Query: 119 LSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           L   G    + +   + ++    L +   R   +      K   S D
Sbjct: 132 LHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD 178


>gi|311743456|ref|ZP_07717262.1| riboflavin biosynthesis protein RibD domain protein [Aeromicrobium
           marinum DSM 15272]
 gi|311312586|gb|EFQ82497.1| riboflavin biosynthesis protein RibD domain protein [Aeromicrobium
           marinum DSM 15272]
          Length = 250

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 77/208 (37%), Gaps = 10/208 (4%)

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
                     +   +  + D         S  I+    ++ +  +R  +D +L+G GT+ 
Sbjct: 27  WPVWPADLVWVRAMMVTTLDGAAAGPDGLSGSISSPEDRDVLVAVRRHADVVLIGAGTLR 86

Query: 202 ADD-PELTCRLNGLQEHS-------PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD 253
            +    +T R +  Q+         P   +L     L  D  +   +   PV++  ++ D
Sbjct: 87  GERYSPMTARASDAQQRHEAGQRSAPTLAVLSGSLDLPWDLPVWAGSTHRPVVLSRDDAD 146

Query: 254 PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
           P      R  + +++         ++  LV RG+  ++ EGG ++    + + LVD   +
Sbjct: 147 PGRIATAR-THADLVLLPDLAPATIIGALVERGLRRIVCEGGPSLLRELMVAGLVDEADI 205

Query: 314 YRSQIVIGEGGIPSPLEEGYLEKNFMCV 341
             S + +G     S  E   +   F  V
Sbjct: 206 TVSPLFVG-TSQSSVTETMAVPARFRLV 232


>gi|290508256|ref|ZP_06547627.1| tRNA-specific adenosine deaminase yfhC [Klebsiella sp. 1_1_55]
 gi|289777650|gb|EFD85647.1| tRNA-specific adenosine deaminase yfhC [Klebsiella sp. 1_1_55]
          Length = 180

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 58/155 (37%), Gaps = 21/155 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL +
Sbjct: 19  DEYWMRHALTLAKRAW--EEGEVPVGAVLVYNNQVIGEGWNRPIGRHDPTAHAEIMALRQ 76

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            G   +      AT YVTLEPC        CA  ++   I R+V    D     +G  + 
Sbjct: 77  GGLVLQNYRLIDATLYVTLEPC------VMCAGAMVHSRIARLVFGARDAKTGAAGSLID 130

Query: 118 WLSQKG----IIVDRMMESEGKIFLHAYLTRQVEK 148
            L   G    + +   + +E    + +   R   +
Sbjct: 131 VLHHPGMNHRVEISEGVLAESCSTMLSDFFRWRRE 165


>gi|260584497|ref|ZP_05852244.1| cytidine/deoxycytidylate deaminase [Granulicatella elegans ATCC
           700633]
 gi|260158015|gb|EEW93084.1| cytidine/deoxycytidylate deaminase [Granulicatella elegans ATCC
           700633]
          Length = 170

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 59/149 (39%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
             FM  AL+ ++           +  ++V +G +IGRG            HAE++A+ +A
Sbjct: 10  EMFMREALKEAQKA--YDKEEVPIGAVVVLNGEIIGRGHNLREKEQDATLHAEIKAIRQA 67

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            +            +VTLEPC      P C+  +I   +++V     DP    +G  +  
Sbjct: 68  NQVLGSWRLEDCELFVTLEPC------PMCSGAMILSRLKKVTFGAFDPKAGTAGTFMNL 121

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYL 142
           L       +  +   ++E E +  L  + 
Sbjct: 122 LQDERFNHQVEVEHGVLEEECQQILKDFF 150


>gi|34498926|ref|NP_903141.1| cytidine deaminase [Chromobacterium violaceum ATCC 12472]
 gi|34104775|gb|AAQ61132.1| probable cytidine deaminase [Chromobacterium violaceum ATCC 12472]
          Length = 244

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 61/157 (38%), Gaps = 23/157 (14%)

Query: 1   MPVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHA 55
           +P  + D  R+M  A   ++           V  L+VKDG +IGRG     G      HA
Sbjct: 86  LPPDADDRLRYMRQARDLAQQAA--AEGEVPVGALVVKDGEIIGRGYNQPIGRHDPSAHA 143

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+QAL +A    R     G   YVTLEPC      P C+  I+   + RV+    D    
Sbjct: 144 EMQALRDAAARLRNYRLDGCDLYVTLEPC------PMCSGAILHARVARVIYGAADAKTG 197

Query: 111 VSGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
            +G  +       L+    +   +        L A+ 
Sbjct: 198 AAGSTVDLFADPRLNHHAAVFGGVEAEACAAQLSAFF 234


>gi|238796745|ref|ZP_04640251.1| tRNA-specific adenosine deaminase [Yersinia mollaretii ATCC 43969]
 gi|238719476|gb|EEQ11286.1| tRNA-specific adenosine deaminase [Yersinia mollaretii ATCC 43969]
          Length = 181

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 65/170 (38%), Gaps = 22/170 (12%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           D  +M  A+  +            V  ++V D  VIG G            HAE+ AL +
Sbjct: 19  DEYWMQRAMTLALRAQ--EEGEVPVGAVLVLDNQVIGEGWNRSIRDNDPTAHAEIMALRQ 76

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            G+  +      AT YVTLEPC        CA  ++   IRR+V   +D     +G  + 
Sbjct: 77  GGQAVQNYRLLEATLYVTLEPC------VMCAGAMVHSRIRRLVYGANDLKTGAAGSLVD 130

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            L   G+     I   ++       L A+   + E++  + +    S D 
Sbjct: 131 ILRHPGMNHQVEISAGVLADACSHQLSAFFRLRREQQKALKIAQRNSLDE 180


>gi|228937324|ref|ZP_04099972.1| hypothetical protein bthur0008_110 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970210|ref|ZP_04130871.1| hypothetical protein bthur0003_100 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228976780|ref|ZP_04137194.1| hypothetical protein bthur0002_100 [Bacillus thuringiensis Bt407]
 gi|228782942|gb|EEM31106.1| hypothetical protein bthur0002_100 [Bacillus thuringiensis Bt407]
 gi|228789511|gb|EEM37429.1| hypothetical protein bthur0003_100 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228822349|gb|EEM68329.1| hypothetical protein bthur0008_110 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326937814|gb|AEA13710.1| cytosine deaminase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 166

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 69/171 (40%), Gaps = 22/171 (12%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ A+
Sbjct: 4   DQDIYFMQLAIEEAKKAEEIQE--VPIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  
Sbjct: 62  DEACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTL 115

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           +  L     + +  +V  ++E E    L  +     +KR  I      + +
Sbjct: 116 MNLLTDERFNHQCEVVSGVLEEECGTLLTNFFRELRKKRKAIKKLEKNTGN 166


>gi|229074082|ref|ZP_04207131.1| hypothetical protein bcere0024_110 [Bacillus cereus Rock4-18]
 gi|229094742|ref|ZP_04225750.1| hypothetical protein bcere0020_110 [Bacillus cereus Rock3-29]
 gi|229100808|ref|ZP_04231626.1| hypothetical protein bcere0019_200 [Bacillus cereus Rock3-28]
 gi|228682615|gb|EEL36674.1| hypothetical protein bcere0019_200 [Bacillus cereus Rock3-28]
 gi|228688680|gb|EEL42550.1| hypothetical protein bcere0020_110 [Bacillus cereus Rock3-29]
 gi|228709045|gb|EEL61169.1| hypothetical protein bcere0024_110 [Bacillus cereus Rock4-18]
          Length = 166

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ A+
Sbjct: 4   DQDIYFMQLAIEEAKKAEEIQE--VPIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  
Sbjct: 62  DEACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTL 115

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +  L     + +  +V  ++E E    L  + 
Sbjct: 116 MNLLTDERFNHQCEVVTGVLEEECGTLLTNFF 147


>gi|229009532|ref|ZP_04166761.1| hypothetical protein bmyco0001_110 [Bacillus mycoides DSM 2048]
 gi|229131029|ref|ZP_04259944.1| hypothetical protein bcere0014_100 [Bacillus cereus BDRD-ST196]
 gi|228652424|gb|EEL08346.1| hypothetical protein bcere0014_100 [Bacillus cereus BDRD-ST196]
 gi|228751743|gb|EEM01540.1| hypothetical protein bmyco0001_110 [Bacillus mycoides DSM 2048]
          Length = 164

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ A+
Sbjct: 2   ERDIYFMQLAIEEAKKAEAIQE--VPIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 59

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA ++        AT YVTLEPC      P CA  I+   I+RVV    DP    +G  
Sbjct: 60  DEACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRIKRVVYGASDPKGGCAGTL 113

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +  L     + +  +V  ++E E    L  + 
Sbjct: 114 MNLLTDERFNHQCEVVPGVLEEECGTLLTIFF 145


>gi|311742295|ref|ZP_07716104.1| riboflavin biosynthesis protein RibD [Aeromicrobium marinum DSM
           15272]
 gi|311313923|gb|EFQ83831.1| riboflavin biosynthesis protein RibD [Aeromicrobium marinum DSM
           15272]
          Length = 233

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 69/224 (30%), Gaps = 15/224 (6%)

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
                  R  + +    S D     A   S  + G   +     LR+  D +LVG GT  
Sbjct: 10  YAYPDTDRPWVRMNFVASVDGSATGADHRSGDLGGEPDRAVYLHLRSVCDVVLVGAGTAR 69

Query: 202 ADD--P-ELTC-----RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD 253
            +D  P  L       R    Q   P+  ++     L         AL    ++V     
Sbjct: 70  DEDYGPVRLDADQQQRRTAAGQRPVPVLALVTRRPDLP-------DALRRDGVVVVTTAR 122

Query: 254 PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
               L      +     D  D   +L     RG   +L EGG ++  S     LVD + L
Sbjct: 123 AAADLDLGPVEVIGHGDDEIDWTAVLEEFGRRGWNRVLGEGGPSLFASLTELDLVDELCL 182

Query: 314 YRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
             +  +    G      +  +++       +     +   ++ +
Sbjct: 183 TVAPTLTAGDGPRITHGDAAVDRPLTLAHAEVDDGVLLTRWLRR 226


>gi|183599769|ref|ZP_02961262.1| hypothetical protein PROSTU_03276 [Providencia stuartii ATCC 25827]
 gi|188022032|gb|EDU60072.1| hypothetical protein PROSTU_03276 [Providencia stuartii ATCC 25827]
          Length = 178

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 63/173 (36%), Gaps = 22/173 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
           M  +  D  +M  AL  ++         P V  L+VKD  +I  G       +    HAE
Sbjct: 1   MTQAEVDEFWMKRALELAKNAQ-DAGEIP-VGALLVKDNQLIASGWNRSIESHDPTAHAE 58

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +  L++ G           T YVTLEPC        CA  ++   I R+V    D     
Sbjct: 59  IMVLQQGGRALSNYRLLDTTLYVTLEPCIM------CAGALVHSRIGRLVYGARDFKTGA 112

Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
            G  +  L + G+     +   ++E      L  +   +  ++      +A +
Sbjct: 113 CGSFINILERPGLNHYVDVKGGVLEETCSAMLSNFFKMRRAQKKAQKQMLAQT 165


>gi|229194412|ref|ZP_04321217.1| hypothetical protein bcere0001_100 [Bacillus cereus m1293]
 gi|228589068|gb|EEK47081.1| hypothetical protein bcere0001_100 [Bacillus cereus m1293]
          Length = 166

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ A+
Sbjct: 4   DQDIHFMQLAIEEAKKAEAIQE--VPIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  
Sbjct: 62  DEACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTL 115

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +  L     + +  +V  ++E E    L  + 
Sbjct: 116 MNLLTDERFNHQCEVVAGVLEEECGTLLTNFF 147


>gi|315033440|gb|EFT45372.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX0017]
          Length = 173

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 22/151 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
             FM  A+  ++   GL      +  +IV+ G +IGRG            HAE+ A++EA
Sbjct: 14  ELFMREAIAEAKKAEGLAEV--PIGAVIVRQGEIIGRGHNLREARQEATAHAEMYAIQEA 71

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                         +VTLEPC      P C+  ++   I  V     DP    +G  +  
Sbjct: 72  CRGIENWRLEETQLFVTLEPC------PMCSGAMLLARIPEVYYGATDPKAGTAGTLMNL 125

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTR 144
           L          +   ++E E ++ L  +  +
Sbjct: 126 LEDERFNHVAYVEAGVLEEECRLLLVQFFKK 156


>gi|329729486|gb|EGG65889.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Staphylococcus epidermidis VCU144]
          Length = 168

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 56/147 (38%), Gaps = 22/147 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
           +M  A+  +     L      +  +IVK+G VI R      T      HAE  A+E A E
Sbjct: 7   YMRLAINEAHKAKAL--GEVPIGAVIVKEGQVIARAHNLRETLQQPTAHAEHIAIERASE 64

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                     T YVTLEPC        CA  II   I +VV    DP    SG  +  L 
Sbjct: 65  VVGSWRLEECTLYVTLEPC------VMCAGTIIMSRIPKVVYGATDPKGGCSGSLMNLLE 118

Query: 121 -----QKGIIVDRMMESEGKIFLHAYL 142
                 +  +   ++E E    L ++ 
Sbjct: 119 QPQFNHRATVEKGILEEECAELLRSFF 145


>gi|255975330|ref|ZP_05425916.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T2]
 gi|307281893|ref|ZP_07562108.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX0860]
 gi|255968202|gb|EET98824.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T2]
 gi|306503847|gb|EFM73069.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX0860]
          Length = 173

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 22/151 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
             FM  A+  ++   GL      +  +IV+ G +IGRG            HAE+ A++EA
Sbjct: 14  EFFMREAIAEAKKAEGLAEV--PIGSVIVRQGEIIGRGHNLREARQEATAHAEMYAIQEA 71

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                         +VTLEPC      P C+  ++   I  V     DP    +G  +  
Sbjct: 72  CRGIENWRLEETQLFVTLEPC------PMCSGAMLLARIPEVYYGATDPKAGTAGTLMNL 125

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTR 144
           L          +   ++E E ++ L  +  +
Sbjct: 126 LEDERFNHVAYVEAGVLEEECRLLLVQFFKK 156


>gi|324324011|gb|ADY19271.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing
           protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 166

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ A+
Sbjct: 4   DQDIYFMQLAIEEAKKAEAIQE--VPIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  
Sbjct: 62  DEACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTL 115

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +  L     + +  +V  ++E E    L  + 
Sbjct: 116 MNLLTDERFNHQCEVVAGVLEEECGTLLTNFF 147


>gi|262278921|ref|ZP_06056706.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259272|gb|EEY78005.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 167

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 55/170 (32%), Gaps = 22/170 (12%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           D  +M  A   +            V  ++V    VIG G  A         HAE+QA+  
Sbjct: 6   DEYWMQLAYEQAELAAQQ--GEIPVGAVVVSQNRVIGSGYNAPISLLDPTAHAEIQAIRA 63

Query: 63  A------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           A            AT YVTLEPC        C   ++   I+ VV    +P         
Sbjct: 64  ACLSLENYRLPEDATLYVTLEPC------TMCVGALVHARIKHVVFGTTEPKAGSLVSTR 117

Query: 117 QWLSQ----KGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           Q L           +     E      ++  +Q  ++  +  +   S ++
Sbjct: 118 QLLQHGYYNHRFTFEHGCLQEKCAQQLSHFFKQRREQKKLEKQQKSSLND 167


>gi|294625308|ref|ZP_06703945.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665062|ref|ZP_06730368.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292600377|gb|EFF44477.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292605180|gb|EFF48525.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 169

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 65/164 (39%), Gaps = 22/164 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHAE 56
           P ++ D  +M  AL+ +          P V  ++V   G V+G G      ++    HAE
Sbjct: 10  PHAAIDVHWMQHALQLAERAERDYDEIP-VGAVLVDAQGNVLGEGWNFNIASHDPSAHAE 68

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ EAG         G T YVTLEPC+       CA  +I   I RVV    DP    
Sbjct: 69  IVAMREAGRRLANHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGA 122

Query: 112 SGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
            G     L+      +  +   ++ +E  + L  Y   +  K  
Sbjct: 123 CGSVFDLLADPRHNHRVQVSGGVLAAEASLRLTNYFRAKRGKPP 166


>gi|229588606|ref|YP_002870725.1| putative deaminase [Pseudomonas fluorescens SBW25]
 gi|229360472|emb|CAY47329.1| putative deaminase [Pseudomonas fluorescens SBW25]
          Length = 166

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 64/160 (40%), Gaps = 21/160 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
           S D  FM  AL  +     L      V  ++V+DG +IGRG            HAE+ A+
Sbjct: 14  SRDQDFMREALVLAAQGAAL--GEVPVGAVLVQDGEIIGRGFNCPISGNDPSAHAEMVAI 71

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A +        G+T YVTLEPCS       CA  I+   I RVV    +P   +    
Sbjct: 72  RAAAQAISNYRLVGSTLYVTLEPCSM------CAGLIVHSRIARVVYGALEPKAGIVQSQ 125

Query: 116 LQWLSQ----KGIIVDRMMESEGKIFLHAYLTRQVEKRSH 151
            Q+ +Q      ++ +  + ++    + +   R    +  
Sbjct: 126 GQFFTQGFLNHRVVFEGGVLAQECGTVLSEFFRARRAKPQ 165


>gi|229039926|ref|ZP_04189692.1| hypothetical protein bcere0027_100 [Bacillus cereus AH676]
 gi|228727416|gb|EEL78607.1| hypothetical protein bcere0027_100 [Bacillus cereus AH676]
          Length = 166

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 22/171 (12%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ A+
Sbjct: 4   DQDIYFMQLAIEEAKKAEEIQE--VPIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           ++A ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  
Sbjct: 62  DDACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTL 115

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           +  L     + +  +V  ++E E    L  +     +KR  I      + +
Sbjct: 116 MNLLTDERFNHQCEVVSGVLEEECGTLLTNFFRELRKKRKAIKKLEKNTGN 166


>gi|229113696|ref|ZP_04243133.1| Uncharacterized deaminase yaaJ [Bacillus cereus Rock1-3]
 gi|228669762|gb|EEL25167.1| Uncharacterized deaminase yaaJ [Bacillus cereus Rock1-3]
          Length = 166

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ A+
Sbjct: 4   DQDIYFMQLAIEEAKKAEEIQE--VPIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA +         AT YVTLEPC      P CA  I+   ++RVV    DP    +G  
Sbjct: 62  DEACKNLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTL 115

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +  L     + +  +V  ++E E    L  + 
Sbjct: 116 MNLLTDERFNHQCEVVTGVLEEECGTLLTNFF 147


>gi|332305596|ref|YP_004433447.1| CMP/dCMP deaminase zinc-binding protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172925|gb|AEE22179.1| CMP/dCMP deaminase zinc-binding protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 162

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 50/126 (39%), Gaps = 17/126 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
             D  +M  AL  +          P V  ++VKD  VIG G            HAE+QA+
Sbjct: 4   EQDQLWMRHALALATKAA-DAGEIP-VGAVLVKDQQVIGEGWNQSIMLNDPSAHAEMQAI 61

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +AGE        G T YVTLEPC        CA  ++   I R+V    D     +G  
Sbjct: 62  RQAGEFIQNYRLIGTTLYVTLEPC------TMCAGLLVHSRIERLVFGAHDAKTGAAGSI 115

Query: 116 LQWLSQ 121
           +  L  
Sbjct: 116 MDVLRD 121


>gi|206972670|ref|ZP_03233610.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus AH1134]
 gi|228950569|ref|ZP_04112705.1| hypothetical protein bthur0006_110 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229077294|ref|ZP_04209977.1| hypothetical protein bcere0023_200 [Bacillus cereus Rock4-2]
 gi|229176621|ref|ZP_04304027.1| hypothetical protein bcere0005_100 [Bacillus cereus 172560W]
 gi|206732390|gb|EDZ49572.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus AH1134]
 gi|228606851|gb|EEK64266.1| hypothetical protein bcere0005_100 [Bacillus cereus 172560W]
 gi|228706017|gb|EEL58322.1| hypothetical protein bcere0023_200 [Bacillus cereus Rock4-2]
 gi|228809112|gb|EEM55595.1| hypothetical protein bthur0006_110 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 166

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 22/171 (12%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ A+
Sbjct: 4   DQDIYFMQLAIEEAKKAEEIQE--VPIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  
Sbjct: 62  DEACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTL 115

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           +  L     + +  +V  ++E E    L ++     +KR  I      + +
Sbjct: 116 MNLLTDERFNHQCEVVSGVLEEECGTLLTSFFRELRKKRKAIKKLEKNTGN 166


>gi|166710619|ref|ZP_02241826.1| riboflavin-specific deaminase; 5-amino-6-uracil reductase
          [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 80

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 30/55 (54%)

Query: 4  SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
          S+ D R+M+ ALR +      T  NP V C+IV+DG+ +G G     G PH E  
Sbjct: 9  SADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHTEFL 63


>gi|326790135|ref|YP_004307956.1| CMP/dCMP deaminase zinc-binding protein [Clostridium lentocellum
           DSM 5427]
 gi|326540899|gb|ADZ82758.1| CMP/dCMP deaminase zinc-binding protein [Clostridium lentocellum
           DSM 5427]
          Length = 175

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/125 (30%), Positives = 49/125 (39%), Gaps = 17/125 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  AL  +      T     +  +IV    VIGRG     T      HAEV A+
Sbjct: 2   EKDIEFMKQALIEAEKA--FTLDEAPIGAVIVYKEQVIGRGHNRRNTDKNALAHAEVMAI 59

Query: 61  EEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            EA +  +       T Y+TLEPC      P C+  I++  + RVV     P     G  
Sbjct: 60  NEACKHIKDWRLEECTIYITLEPC------PMCSGAIVQARLPRVVFGARSPKAGFGGSV 113

Query: 116 LQWLS 120
           L  L 
Sbjct: 114 LNILQ 118


>gi|229159196|ref|ZP_04287222.1| hypothetical protein bcere0009_110 [Bacillus cereus R309803]
 gi|228624277|gb|EEK81077.1| hypothetical protein bcere0009_110 [Bacillus cereus R309803]
          Length = 166

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ A+
Sbjct: 4   DQDIYFMQLAIEEAQKAEEIQE--VPIGAVIVLDGEVISSAHNLRETEQRSIAHAELLAI 61

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  
Sbjct: 62  DEACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTL 115

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +  L     + +  +V  ++E E    L  + 
Sbjct: 116 MNLLTDERFNHQCEVVTGVLEEECGTLLTNFF 147


>gi|281179608|dbj|BAI55938.1| putative deaminase [Escherichia coli SE15]
          Length = 178

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 60/167 (35%), Gaps = 21/167 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  A+  ++           V  ++V +  VIG G     G      HAE+ AL + 
Sbjct: 20  EYWMRHAMTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQG 77

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +      AT YVTLEPC        CA  +I   I RVV    D     +G  +  
Sbjct: 78  GLVMQNYRLIDATLYVTLEPC------VMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDV 131

Query: 119 LSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           L   G    + +   + ++    L +   R   +      K   S D
Sbjct: 132 LHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD 178


>gi|120405702|ref|YP_955531.1| hypothetical protein Mvan_4752 [Mycobacterium vanbaalenii PYR-1]
 gi|119958520|gb|ABM15525.1| bifunctional deaminase-reductase domain protein [Mycobacterium
           vanbaalenii PYR-1]
          Length = 234

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 70/172 (40%), Gaps = 20/172 (11%)

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADD--P-ELTC------RLNGLQEHSPMRII 223
           P++       +  LRA +D +LVG GT  A++  P  L        R  GL E  P   +
Sbjct: 42  PLSCPADHTLLLALRAYADVVLVGAGTARAENYGPVRLRAEHLAQRRELGLGEQPPAIAV 101

Query: 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTI 281
           +    +L             P I+VT         +  +K+  ++ C  +  D+ + +  
Sbjct: 102 VSRSGRLPE-----SMFGSVPPILVTSARGRQPRPSGVEKSCEVMVCGDEQVDVAEAVRR 156

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG----EGGIPSPL 329
           L  +G   +L EGG  + +  + + LVD + +  +  + G      G P+ L
Sbjct: 157 LRAQGSHRILCEGGPTLLNELVEADLVDELCVTLAPRLAGSQPLGAGRPARL 208


>gi|227499915|ref|ZP_03930008.1| nucleoside deaminase [Anaerococcus tetradius ATCC 35098]
 gi|227218024|gb|EEI83297.1| nucleoside deaminase [Anaerococcus tetradius ATCC 35098]
          Length = 169

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/126 (30%), Positives = 51/126 (40%), Gaps = 17/126 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57
             S  D  FM  A+  +R    +      V  +IV DG +IGRG            HAE+
Sbjct: 11  KFSEEDYFFMGEAINEARLARFI--EEVPVGAVIVLDGKIIGRGHNYTFKGKSALKHAEI 68

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A++EA           AT YVT+EPCS       CA  II   I R+V+ + D      
Sbjct: 69  MAIKEASAYIDDFRLERATMYVTMEPCSM------CAGAIINSRIDRLVIGIRDHKRGAC 122

Query: 113 GRGLQW 118
           G     
Sbjct: 123 GSNTNI 128


>gi|119179553|ref|XP_001241350.1| hypothetical protein CIMG_08513 [Coccidioides immitis RS]
          Length = 230

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 74/186 (39%), Gaps = 26/186 (13%)

Query: 1   MPVSSFD----ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGC 52
           M  +S D     +FM  AL+ +   + +  T   V C++V DG VIGRG+        G 
Sbjct: 41  MADTSADNPAHEQFMREALQMAEQALAIGET--PVGCVLVHDGKVIGRGMNDTNRSLNGT 98

Query: 53  PHAEVQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
            HAE  A+EEA         R    YVT+EPC        CA  + +  IRRV     + 
Sbjct: 99  RHAEFLAIEEALRSYPRSIFRTTDLYVTVEPCIM------CASLLRQNYIRRVFFGCVND 152

Query: 108 DVRVSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
               +G  L   S + I     +   +  +E  + L  +  ++ EK  +   K       
Sbjct: 153 RFGGTGGVLNLHSDRAIDPPYTVYGGIFRNEAIMLLRRFYIQENEKAPNPRPKSNRELKR 212

Query: 163 MIGMAG 168
            +  A 
Sbjct: 213 KLDDAD 218


>gi|283786173|ref|YP_003366038.1| tRNA-specific adenosine deaminase [Citrobacter rodentium ICC168]
 gi|282949627|emb|CBG89246.1| tRNA-specific adenosine deaminase [Citrobacter rodentium ICC168]
          Length = 180

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 62/166 (37%), Gaps = 22/166 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL + 
Sbjct: 22  EYWMRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQG 79

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +      AT YVTLEPC        CA  ++   I RVV    D     +G  +  
Sbjct: 80  GLVLQNYRLIDATLYVTLEPC------VMCAGAMVHSRISRVVFGARDAKTGAAGSLIDV 133

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
           L   G+     I + ++  E    L  +   + ++   +    + +
Sbjct: 134 LHHPGMNHRVEITEGVLRDECATLLSDFFRMRRQEIKALKKASSAT 179


>gi|228918972|ref|ZP_04082353.1| hypothetical protein bthur0011_100 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840687|gb|EEM85947.1| hypothetical protein bthur0011_100 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 166

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ A+
Sbjct: 4   DQDIYFMQLAIEEAKKAEEIQE--VPIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  
Sbjct: 62  DEACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTL 115

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +  L     + +  +V  ++E E    L  + 
Sbjct: 116 MNLLTDERFNHQCEVVSGVLEEECGTLLTNFF 147


>gi|327483608|gb|AEA78015.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae LMA3894-4]
          Length = 175

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 66/176 (37%), Gaps = 22/176 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
            S+ D +FM      +            V  ++V+DG +I  G     T +    HAE++
Sbjct: 6   FSAQDEQFMRR--AIALAAQAEAQGEVPVGAVLVRDGEIIAEGWNGSITNHDATAHAEIE 63

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            + +AG+          T YVTLEPC      P CA  ++   ++R+V    D     +G
Sbjct: 64  VIRKAGKALSNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAG 117

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164
             L   S         +   ++E E +  L A+  R+ ++            +   
Sbjct: 118 TVLDLFSSQAAYHYATVEKGLLEEECRAQLQAFFQRRRKEIKAKRDAERKDAERKN 173


>gi|296104233|ref|YP_003614379.1| tRNA-specific adenosine deaminase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058692|gb|ADF63430.1| tRNA-specific adenosine deaminase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 168

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 61/168 (36%), Gaps = 22/168 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  AL  +R           V  ++V +  VIG G     G      HAE+ AL + 
Sbjct: 9   EYWMRHALTLARRAW--DEGEVPVGAVLVHNNQVIGEGWNRPIGRHDPTAHAEIMALRQG 66

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +       T YVTLEPC        C+  ++   I  +V    D     +G  +  
Sbjct: 67  GLVLQNYRLLDTTLYVTLEPC------VMCSGAMVHSRIGTLVFGARDEKTGAAGSLMDV 120

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           L   G+      +  ++  E    L  +   + +++     ++  S D
Sbjct: 121 LGHPGMNHQVKTIGGVLAPECSGLLSDFFRMRRQQKKQQKAELKSSGD 168


>gi|257899803|ref|ZP_05679456.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium Com15]
 gi|293571142|ref|ZP_06682180.1| tRNA-specific adenosine deaminase [Enterococcus faecium E980]
 gi|257837715|gb|EEV62789.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium Com15]
 gi|291608755|gb|EFF38039.1| tRNA-specific adenosine deaminase [Enterococcus faecium E980]
          Length = 165

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 26/160 (16%)

Query: 1   MPVSSFD----ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGC 52
           M  ++ D     ++M  AL  ++    L      +  ++V +G VIG+G     T     
Sbjct: 1   MVNTNLDAVDKEKWMRLALAEAKKAEVLHEV--PIGAVVVLEGEVIGKGYNLRETTQDAT 58

Query: 53  PHAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
            HAE+ A++EA E+        A+ +VTLEPC      P C+  +I   +  V     DP
Sbjct: 59  THAEMLAIKEACEKVGSWRLENASLFVTLEPC------PMCSGAMILSRVAEVYFGAYDP 112

Query: 108 DVRVSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
               +G  +  L       +  +   ++E E  + L  + 
Sbjct: 113 KGGTAGTLMNLLEDERFNHQAYVEGGILEDECGMILTDFF 152


>gi|319955332|ref|YP_004166599.1| guanine deaminase [Cellulophaga algicola DSM 14237]
 gi|319423992|gb|ADV51101.1| Guanine deaminase [Cellulophaga algicola DSM 14237]
          Length = 158

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 42/116 (36%), Gaps = 16/116 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           ++  D  FM  A+  +   +   +  P    ++VKD  +I  G            HAEV 
Sbjct: 1   MTERDEFFMKRAIALAEEGMNANAGGP-FGAVVVKDDEIIAEGYNRVTSTNDPTAHAEVV 59

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           A+ EA ++         T Y + EPC      P C   I     + V    +  D 
Sbjct: 60  AIREACKKLNNFELTDCTIYTSCEPC------PMCLGAIYWTRPKMVYFGCNREDA 109


>gi|254030277|gb|ACT53870.1| DRAP deaminase [Candida membranifaciens]
          Length = 357

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 10/134 (7%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALE----EA 63
           ++M  A+  +    G T+T  +V  ++V DG ++G G T    G  HAE  ALE      
Sbjct: 212 KYMELAIELAEK-CGETTTQFNVGAVLVYDGEILGTGHTRELEGNTHAEQCALEKYFTRT 270

Query: 64  GEE--ARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDP-DVRVSGRGLQWL 119
           GE     G   Y ++EPCS     + PC + I++  I    V V +P D       +Q L
Sbjct: 271 GERNVPYGTKIYTSMEPCSFRLSGNLPCVERILQTNITTCFVGVVEPGDFVKDNTSVQTL 330

Query: 120 SQKGIIVDRMMESE 133
             KG+    +   E
Sbjct: 331 ESKGVEYIHIPGYE 344


>gi|116874087|ref|YP_850868.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing
           protein [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116742965|emb|CAK22089.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 156

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 22/150 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
           A FM  AL  +     +      +  ++V DG +IGR      T+     HAE+ A+++A
Sbjct: 4   AFFMQQALAEAEKAQEI--GEVPIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDA 61

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            +        GA  YVTLEPC      P C+  I+   I +V     DP    +G  +  
Sbjct: 62  CKHQNSWRLSGAELYVTLEPC------PMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNL 115

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLT 143
           L          +   +ME E    L  +  
Sbjct: 116 LQDNRFNHTCEVEAGLMEVESSEMLKKFFQ 145


>gi|229523332|ref|ZP_04412739.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae TM 11079-80]
 gi|229339695|gb|EEO04710.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae TM 11079-80]
          Length = 177

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 66/176 (37%), Gaps = 22/176 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
            S+ D +FM      +            V  ++V+DG +I  G     T +    HAE++
Sbjct: 8   FSAQDEQFMRR--AIALAAQAEAQGEVPVGAVLVRDGEIIAEGWNGSITNHDATAHAEIE 65

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            + +AG+          T YVTLEPC      P CA  ++   ++R+V    D     +G
Sbjct: 66  VIRKAGKALSNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAG 119

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164
             L   S         +   ++E E +  L A+  R+ ++            +   
Sbjct: 120 TVLDLFSSQAAYHYATVEKGLLEEECRAQLQAFFQRRRKEIKAKRDAERKDAERKN 175


>gi|229107707|ref|ZP_04237345.1| hypothetical protein bcere0018_100 [Bacillus cereus Rock1-15]
 gi|228675747|gb|EEL30953.1| hypothetical protein bcere0018_100 [Bacillus cereus Rock1-15]
          Length = 166

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 22/171 (12%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ A+
Sbjct: 4   DQDIYFMQLAIEEAKKAEEIQE--VPIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           ++A ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  
Sbjct: 62  DDACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTL 115

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           +  L     + +  +V  ++E E    L  +     +KR  I      + +
Sbjct: 116 MNLLTDERFNHQCEVVSGVLEEECGALLTNFFRELRKKRKAIKKLEKNTGN 166


>gi|326575668|gb|EGE25591.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis CO72]
          Length = 181

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 54/148 (36%), Gaps = 31/148 (20%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
            S  D   M+ AL  ++           V  ++V +G ++G G     T      HAE+ 
Sbjct: 21  WSMHDVEMMNRALEIAKQGAKF--GEIPVGAVVVYEGRILGEGYNCPITTQDPTAHAEIV 78

Query: 59  ALEEAGE------EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           A+  A E        +G   YVTLEPC        C   +I   I RVV    +P     
Sbjct: 79  AVRRACETLNNYRLPKGCILYVTLEPC------TMCFGTLIHARISRVVFGAFEPK---- 128

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHA 140
                     G++V ++   E   + H 
Sbjct: 129 ---------AGVVVSQLKLPEQVFYNHH 147


>gi|288554625|ref|YP_003426560.1| CMP/dCMP deaminase zinc-binding protein [Bacillus pseudofirmus OF4]
 gi|288545785|gb|ADC49668.1| CMP/dCMP deaminase zinc-binding protein [Bacillus pseudofirmus OF4]
          Length = 162

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 64/156 (41%), Gaps = 22/156 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           ++     +M  ALR +     +      +  +IVKDG VI               HAE+ 
Sbjct: 1   MAETHEDWMKLALREADAAEQI--GEVPIGAVIVKDGEVIAAAHNRRECDHQAIAHAELL 58

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A++EA +        G T YVTLEPC      P CA  I++  I  VV    DP    +G
Sbjct: 59  AIKEACDVLGSWRLSGCTLYVTLEPC------PMCAGAIVQSRIDLVVYGAADPKAGCAG 112

Query: 114 RGLQWL-----SQKGIIVDRMMESEGKIFLHAYLTR 144
             +  L     + +  ++   +E+E    L A+  +
Sbjct: 113 TLMNLLDDPRFNHRAEVISGCLETECGERLTAFFRK 148


>gi|229142827|ref|ZP_04271271.1| hypothetical protein bcere0012_100 [Bacillus cereus BDRD-ST24]
 gi|229148430|ref|ZP_04276688.1| hypothetical protein bcere0011_100 [Bacillus cereus m1550]
 gi|296500855|ref|YP_003662555.1| cytosine deaminase [Bacillus thuringiensis BMB171]
 gi|228635039|gb|EEK91610.1| hypothetical protein bcere0011_100 [Bacillus cereus m1550]
 gi|228640641|gb|EEK97027.1| hypothetical protein bcere0012_100 [Bacillus cereus BDRD-ST24]
 gi|296321907|gb|ADH04835.1| cytosine deaminase [Bacillus thuringiensis BMB171]
          Length = 166

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 22/171 (12%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ A+
Sbjct: 4   DQDIYFMQLAIEEAKKAEEIQE--VPIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           ++A ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  
Sbjct: 62  DDACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTL 115

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           +  L     + +  +V  ++E E    L  +     +KR  I      + +
Sbjct: 116 MNLLTDERFNHQCEVVSGVLEEECGTLLTNFFRELRKKRKAIKKLEKNTGN 166


>gi|33862438|ref|NP_893998.1| RibD/RibG domain-containing protein [Prochlorococcus marinus str.
           MIT 9313]
 gi|33640551|emb|CAE20340.1| RibD/ribG C-terminal domain [Prochlorococcus marinus str. MIT 9313]
          Length = 238

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 82/229 (35%), Gaps = 15/229 (6%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA--- 202
           ++K+  + L +A+S D  +  A  G   + G   +  +    A +D  L+G GT+ A   
Sbjct: 1   MQKQFWLRLVLAISLDGRLAPAIGGPAQLGGVGDRRVLEEALAWADGALLGAGTLRAHRS 60

Query: 203 -----DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
                D   L  R +      P  +++      + +    +  L   ++           
Sbjct: 61  TCLIHDQDLLNQRKSAGHSAQPTAVVVSRQQWYAAELPFFQQPLERWLLSPHLAKAKGSK 120

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
                          +D  + L  L   G+  L++ GGA +A S + + +VD + L  + 
Sbjct: 121 DPLLPVGYERQVLFEQDWPQALNRLAELGLFRLVLLGGAQLAASLLQADVVDELQLTLTP 180

Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYF-------GSDVCLEYIGKNL 359
            ++G      P + G L  +       +         +++ L Y  K +
Sbjct: 181 KLLGGMHAWVPFQGGDLPDDLGDAEAWHLQTVEPLTNNELLLRYERKRV 229


>gi|114330609|ref|YP_746831.1| CMP/dCMP deaminase, zinc-binding [Nitrosomonas eutropha C91]
 gi|114307623|gb|ABI58866.1| tRNA-adenosine deaminase [Nitrosomonas eutropha C91]
          Length = 167

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 62/155 (40%), Gaps = 22/155 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEV 57
           PV + D  FM  AL  +R   G +   P V  ++V++  + G G     T      HAE+
Sbjct: 9   PVQAEDEYFMRQALDLARVA-GDSGEVP-VGAVVVRNSQIAGYGYNCPVTLMDPTAHAEI 66

Query: 58  QALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL +A  +         T YVTLEPC        C   +    I+R+V   +DP   V 
Sbjct: 67  MALRDAANKLGNYRLPECTLYVTLEPC------VMCIGSMFHARIKRLVYAAEDPKTGVC 120

Query: 113 GRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
           G  L       L+   ++   ++  E    L  + 
Sbjct: 121 GSLLDLPADTRLNHHLVVSQGVLADEASTLLKQFF 155


>gi|229053868|ref|ZP_04195305.1| hypothetical protein bcere0026_110 [Bacillus cereus AH603]
 gi|228721478|gb|EEL72995.1| hypothetical protein bcere0026_110 [Bacillus cereus AH603]
          Length = 164

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ A+
Sbjct: 2   ERDIYFMQLAIEEAKKAEAIQE--VPIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 59

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA ++        AT YVTLEPC      P CA  I+   I+RVV    DP    +G  
Sbjct: 60  DEACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRIKRVVYGASDPKGGCAGTL 113

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +  L     + +  +V  ++E E    L  + 
Sbjct: 114 MNLLTDERFNHQCEVVAGVLEEECGTLLTIFF 145


>gi|304315578|ref|YP_003850723.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777080|gb|ADL67639.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 143

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 17/143 (11%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE- 65
           M  A+  +   + L      V  ++VKDGI+IG+G     T      HAE+ A+++A + 
Sbjct: 1   MKCAIDEAVLSLKLGEM--PVGAVVVKDGIIIGKGHNLKETEKDATQHAEINAIKDACKN 58

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                   A+ YVTLEPC      P CA  IIE  I+RV +  +  D   +G    +L++
Sbjct: 59  IGDWRLNDASLYVTLEPC------PMCAGAIIESRIKRVYIGAESHDSGAAGTVYDFLNK 112

Query: 122 KGIIVDRMMESEGKIFLHAYLTR 144
           K  +   +ME + K  +  + +R
Sbjct: 113 KVDVYFGIMEDDCKKLISDFFSR 135


>gi|206978348|ref|ZP_03239222.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus H3081.97]
 gi|217957598|ref|YP_002336140.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus AH187]
 gi|222093791|ref|YP_002527839.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus Q1]
 gi|228983277|ref|ZP_04143492.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229136865|ref|ZP_04265494.1| Uncharacterized deaminase yaaJ [Bacillus cereus BDRD-ST26]
 gi|229153801|ref|ZP_04281933.1| Uncharacterized deaminase yaaJ [Bacillus cereus ATCC 4342]
 gi|206743440|gb|EDZ54873.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus H3081.97]
 gi|217065488|gb|ACJ79738.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus AH187]
 gi|221237837|gb|ACM10547.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus Q1]
 gi|228629670|gb|EEK86365.1| Uncharacterized deaminase yaaJ [Bacillus cereus ATCC 4342]
 gi|228646600|gb|EEL02805.1| Uncharacterized deaminase yaaJ [Bacillus cereus BDRD-ST26]
 gi|228776457|gb|EEM24808.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 166

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV +G VI        T      HAE+ A+
Sbjct: 4   DQDIYFMQLAIEEAKKAEAIQE--VPIGAVIVLNGEVISVAHNLRETEQRSIAHAELLAI 61

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  
Sbjct: 62  DEACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTL 115

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +  L     + +  +V  ++E E    L  + 
Sbjct: 116 MNLLTDERFNHQCEVVAGVLEEECGTLLTNFF 147


>gi|331003430|ref|ZP_08326929.1| hypothetical protein HMPREF0491_01791 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412476|gb|EGG91865.1| hypothetical protein HMPREF0491_01791 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 155

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 21/131 (16%)

Query: 5   SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQ 58
             D  F+  A++ ++    +G       + C+IV +  +I RG            HAE+ 
Sbjct: 2   DRDNYFLKEAVKQAKKAGEIGDV----PIGCVIVFEDKIIARGYNRRNKDKSTLSHAEII 57

Query: 59  ALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+++A ++         T Y+TLEPC      P CA  II+  I+RVV+   +P    +G
Sbjct: 58  AIKKACKKIGDWRLEDCTMYITLEPC------PMCAGAIIQSRIKRVVLGAMNPKAGCAG 111

Query: 114 RGLQWLSQKGI 124
             +  L  +G 
Sbjct: 112 SIINILQTEGF 122


>gi|218234516|ref|YP_002364872.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus B4264]
 gi|218162473|gb|ACK62465.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus B4264]
          Length = 166

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 22/171 (12%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ A+
Sbjct: 4   DQDIYFMQLAIEEAKKAEEIQE--VPIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           ++A ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  
Sbjct: 62  DDACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTL 115

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           +  L     + +  +V  ++E E    L  +     +KR  I      + +
Sbjct: 116 MNLLTDDRFNHQCEVVSGVLEEECGTLLTNFFRELRKKRKAIKKLEKNTGN 166


>gi|223043054|ref|ZP_03613102.1| tRNA-specific adenosine deaminase [Staphylococcus capitis SK14]
 gi|222443908|gb|EEE50005.1| tRNA-specific adenosine deaminase [Staphylococcus capitis SK14]
          Length = 168

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 59/156 (37%), Gaps = 22/156 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEE 62
           D  +M  A++ ++    L      +  +IVK+  VI               HAE  A+E 
Sbjct: 4   DKDYMRLAIKEAQKAQAL--GEVPIGAVIVKNNQVIAHAHNLRESLQLPTAHAEHIAIER 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +          T YVTLEPC        CA  I+   I RVV    DP    +G  + 
Sbjct: 62  ASKVVGSWRLEECTLYVTLEPC------VMCAGAIVMSRIPRVVYGAVDPKGGCTGSLMN 115

Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEK 148
            L       + I+   ++E+E    L  +     ++
Sbjct: 116 LLEQPQFNHRAIVESGILENECSTLLRDFFKNIRQQ 151


>gi|88813490|ref|ZP_01128725.1| zinc-binding domain protein [Nitrococcus mobilis Nb-231]
 gi|88789280|gb|EAR20412.1| zinc-binding domain protein [Nitrococcus mobilis Nb-231]
          Length = 181

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 50/125 (40%), Gaps = 17/125 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
           VS  D  FM+ AL  +R           V  ++V+   V+G G            HAE++
Sbjct: 22  VSDQDQAFMARALELARRAQ--AHGEVPVGAVVVQRERVVGEGYNRPIATRDPTAHAEIE 79

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL  AG+          T YVTLEPC+       C   +I   + R+V    DP     G
Sbjct: 80  ALRAAGQALGAYRLPATTLYVTLEPCAM------CVGALIHARVARLVFGAHDPKTGACG 133

Query: 114 RGLQW 118
             L+ 
Sbjct: 134 GALRL 138


>gi|52145192|ref|YP_081636.1| cytidine/deoxycytidylate deaminase family protein [Bacillus cereus
           E33L]
 gi|51978661|gb|AAU20211.1| probable cytidine/deoxycytidylate deaminase family protein
           [Bacillus cereus E33L]
          Length = 166

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV +G VI        T      HAE+ A+
Sbjct: 4   DQDIYFMQLAIEEAKKAEAIQE--VPIGAVIVLNGEVISAAHNLRETEQRSIAHAELLAI 61

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  
Sbjct: 62  DEACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGAGDPKGGCAGTL 115

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +  L     + +  +VD ++E E    L  + 
Sbjct: 116 MNLLTDERFNHQCEVVDGVLEEECGTLLTNFF 147


>gi|109899420|ref|YP_662675.1| CMP/dCMP deaminase, zinc-binding [Pseudoalteromonas atlantica T6c]
 gi|109701701|gb|ABG41621.1| tRNA-adenosine deaminase [Pseudoalteromonas atlantica T6c]
          Length = 162

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 60/152 (39%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  +M  AL  +          P V  ++VKD  ++G G     T      HAE+ A+
Sbjct: 4   EQDQLWMRHALSLASKAA-QAGEIP-VGAVLVKDQKIVGEGWNQSITLNDPSAHAEMLAI 61

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +AG   +       T YVTLEPC        CA  ++   I+R+V    D     +G  
Sbjct: 62  RQAGINVKNYRLIDTTLYVTLEPC------TMCAGLLVHSRIKRLVFGAYDAKTGAAGSI 115

Query: 116 LQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
           +       L+ +  +V  ++  E    + A+ 
Sbjct: 116 MDVLNDTRLNHQVEVVGGVLGEECGETISAFF 147


>gi|27467245|ref|NP_763882.1| Cu binding protein (Mn oxidation [Staphylococcus epidermidis ATCC
           12228]
 gi|27314788|gb|AAO03924.1|AE016745_23 Cu binding protein (Mn oxidation [Staphylococcus epidermidis ATCC
           12228]
 gi|329734672|gb|EGG70979.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Staphylococcus epidermidis VCU028]
          Length = 168

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 56/147 (38%), Gaps = 22/147 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
           +M  A+  +     L      +  +IVK+G VI R      T      HAE  A+E A E
Sbjct: 7   YMRLAINEAHKAKAL--GEVPIGAVIVKEGQVIARAHNLRETLQQPTAHAEHIAIERASE 64

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                     T YVTLEPC        CA  II   I +VV    DP    SG  +  L 
Sbjct: 65  VVGSWRLEECTLYVTLEPC------VMCAGTIIMSRIPKVVYGATDPKGGCSGSLMNLLE 118

Query: 121 -----QKGIIVDRMMESEGKIFLHAYL 142
                 +  +   ++E E    L ++ 
Sbjct: 119 QPQFNHRATVEKGILEEECAELLRSFF 145


>gi|320539250|ref|ZP_08038920.1| putative cytidine and deoxycytidylate deaminase zinc-binding
           protein [Serratia symbiotica str. Tucson]
 gi|320030642|gb|EFW12651.1| putative cytidine and deoxycytidylate deaminase zinc-binding
           protein [Serratia symbiotica str. Tucson]
          Length = 170

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 57/150 (38%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M  ALR +            V  L+V D  VIG G     G      HAE+ AL +
Sbjct: 7   DQYWMCQALRLALRAQ--EEGEVPVGALLVLDNQVIGEGWNRPIGRHDPTAHAEIMALRQ 64

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            G   +      AT YVTLEPC        CA  ++   IRR+V    D     +G  + 
Sbjct: 65  GGAVLQNYRLLNATLYVTLEPC------VMCAGAMVHSRIRRLVYGTADEKTGAAGSLMD 118

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYL 142
            L   G+     I   ++  E    L  + 
Sbjct: 119 ILRHPGMNHQVEIASGVLADECAAMLSHFF 148


>gi|224475714|ref|YP_002633320.1| putative deaminase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222420321|emb|CAL27135.1| putative deaminase [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 159

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
           + D  +M  AL  ++    +      +  ++VK+G VI R      T      HAE  A+
Sbjct: 2   ATDENYMKLALEEAKKAERI--GEVPIGAIVVKEGEVIARAHNLRETVQQPTAHAEHIAI 59

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           E+A E          T YVTLEPC        C+  I+   I RVV    DP    SG  
Sbjct: 60  EKAAEAVGSWRLEDCTLYVTLEPC------VMCSGAIVMSRIPRVVYGASDPKGGCSGSL 113

Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
           +  L       +  +V  ++E+E    L ++ 
Sbjct: 114 MDLLQEPRFNHRAEVVSGVLENECGAILKSFF 145


>gi|218895158|ref|YP_002443569.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus G9842]
 gi|218541226|gb|ACK93620.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus G9842]
          Length = 166

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ A+
Sbjct: 4   DRDIYFMQLAIEEAKKAEEMQE--VPIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  
Sbjct: 62  DEACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTL 115

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +  L     + +  +V  ++E E    L  + 
Sbjct: 116 MNLLTDERFNHQCEVVTGVLEEECGTLLTNFF 147


>gi|154484290|ref|ZP_02026738.1| hypothetical protein EUBVEN_02003 [Eubacterium ventriosum ATCC
           27560]
 gi|149734767|gb|EDM50684.1| hypothetical protein EUBVEN_02003 [Eubacterium ventriosum ATCC
           27560]
          Length = 178

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 60/150 (40%), Gaps = 21/150 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
           ++M  A++ ++     +     + C+IV    +IGRG            HAE+ A+++A 
Sbjct: 29  KYMKEAIKQAKKAA--SIGEVPIGCVIVYQDKIIGRGYNRRMVDKNTLSHAELNAIKKAS 86

Query: 65  EE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           ++           YVT EPC        CA  I++  I++V +   +P    +G  +  L
Sbjct: 87  KKLDDWRLDDCELYVTTEPCQM------CAGAIVQARIKKVYIGCMNPKAGCAGSIMNLL 140

Query: 120 S----QKGIIVDRMMESEGKIFLHAYLTRQ 145
                   + +++ +  E    L     R 
Sbjct: 141 QVDKFNHQVEMEKGILEEECSNLLKDFFRN 170


>gi|21242782|ref|NP_642364.1| hypothetical protein XAC2038 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21108264|gb|AAM36900.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 169

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 65/164 (39%), Gaps = 22/164 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHAE 56
           P ++ D  +M  AL+ +          P V  ++V   G V+G G      ++    HAE
Sbjct: 10  PHAAIDVHWMQHALQLAERAERDYDEIP-VGAVLVDAQGNVLGEGWNFNIASHDPSAHAE 68

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ EAG         G T YVTLEPC+       CA  +I   I RVV    DP    
Sbjct: 69  IVAMREAGRRLANHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGA 122

Query: 112 SGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
            G     L+      +  +   ++ ++  + L  Y   +  K  
Sbjct: 123 CGSVFDLLADPRHNHRVQVCGGVLAAQASLRLTNYFRAKRGKPP 166


>gi|42779100|ref|NP_976347.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing
           protein [Bacillus cereus ATCC 10987]
 gi|42735015|gb|AAS38955.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus ATCC 10987]
          Length = 166

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV +G VI        T      HAE+ A+
Sbjct: 4   DQDIYFMQLAIEEAKKAEAIQE--VPIGAVIVLNGEVISVAHNLRETEQRSIAHAELLAI 61

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  
Sbjct: 62  DEACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTL 115

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +  L     + +  +V  ++E E    L  + 
Sbjct: 116 MNLLTDERFNHQCEVVAGVLEEECGTLLTNFF 147


>gi|228898775|ref|ZP_04063059.1| hypothetical protein bthur0014_110 [Bacillus thuringiensis IBL
           4222]
 gi|228860867|gb|EEN05243.1| hypothetical protein bthur0014_110 [Bacillus thuringiensis IBL
           4222]
          Length = 166

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ A+
Sbjct: 4   DRDIYFMQLAIEEAKKAEEIQE--VPIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  
Sbjct: 62  DEACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTL 115

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +  L     + +  +V  ++E E    L  + 
Sbjct: 116 MNLLTDERFNHQCEVVTGVLEEECGTLLTNFF 147


>gi|228905818|ref|ZP_04069717.1| hypothetical protein bthur0013_110 [Bacillus thuringiensis IBL 200]
 gi|228853826|gb|EEM98584.1| hypothetical protein bthur0013_110 [Bacillus thuringiensis IBL 200]
          Length = 166

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ A+
Sbjct: 4   DRDIYFMQLAIEEAKKAEEIQE--VPIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  
Sbjct: 62  DEACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTL 115

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +  L     + +  +V  ++E E    L  + 
Sbjct: 116 MNLLTDERFNHQCEVVTGVLEEECGTLLTNFF 147


>gi|15803084|ref|NP_289115.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 EDL933]
 gi|15832679|ref|NP_311452.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           Sakai]
 gi|82777934|ref|YP_404283.1| tRNA-specific adenosine deaminase [Shigella dysenteriae Sd197]
 gi|91211884|ref|YP_541870.1| tRNA-specific adenosine deaminase [Escherichia coli UTI89]
 gi|110642721|ref|YP_670451.1| tRNA-specific adenosine deaminase [Escherichia coli 536]
 gi|117624781|ref|YP_853694.1| tRNA-specific adenosine deaminase [Escherichia coli APEC O1]
 gi|187775816|ref|ZP_02798525.2| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4196]
 gi|189009982|ref|ZP_02803540.2| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4076]
 gi|189405037|ref|ZP_02812923.2| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC869]
 gi|189405736|ref|ZP_02823945.2| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC508]
 gi|191172647|ref|ZP_03034186.1| tRNA-specific adenosine deaminase [Escherichia coli F11]
 gi|194432153|ref|ZP_03064442.1| tRNA-specific adenosine deaminase [Shigella dysenteriae 1012]
 gi|218559479|ref|YP_002392392.1| tRNA-specific adenosine deaminase [Escherichia coli S88]
 gi|218690674|ref|YP_002398886.1| tRNA-specific adenosine deaminase [Escherichia coli ED1a]
 gi|237705067|ref|ZP_04535548.1| tRNA-specific adenosine deaminase [Escherichia sp. 3_2_53FAA]
 gi|291283784|ref|YP_003500602.1| tRNA-specific adenosine deaminase [Escherichia coli O55:H7 str.
           CB9615]
 gi|293415828|ref|ZP_06658471.1| tRNA-specific adenosine deaminase [Escherichia coli B185]
 gi|300935691|ref|ZP_07150661.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 21-1]
 gi|300974171|ref|ZP_07172489.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 200-1]
 gi|309784689|ref|ZP_07679322.1| tRNA-specific adenosine deaminase [Shigella dysenteriae 1617]
 gi|331648252|ref|ZP_08349342.1| tRNA-specific adenosine deaminase [Escherichia coli M605]
 gi|331653994|ref|ZP_08354995.1| tRNA-specific adenosine deaminase [Escherichia coli M718]
 gi|331658703|ref|ZP_08359647.1| tRNA-specific adenosine deaminase [Escherichia coli TA206]
 gi|12516972|gb|AAG57673.1|AE005486_4 putative deaminase [Escherichia coli O157:H7 str. EDL933]
 gi|13362896|dbj|BAB36848.1| putative deaminase [Escherichia coli O157:H7 str. Sakai]
 gi|81242082|gb|ABB62792.1| putative deaminase [Shigella dysenteriae Sd197]
 gi|91073458|gb|ABE08339.1| putative deaminase [Escherichia coli UTI89]
 gi|110344313|gb|ABG70550.1| hypothetical protein YfhC [Escherichia coli 536]
 gi|115513905|gb|ABJ01980.1| tRNA-specific adenosine deaminase [Escherichia coli APEC O1]
 gi|187770595|gb|EDU34439.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4196]
 gi|189003519|gb|EDU72505.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4076]
 gi|189372298|gb|EDU90714.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC869]
 gi|189378592|gb|EDU97008.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC508]
 gi|190907120|gb|EDV66720.1| tRNA-specific adenosine deaminase [Escherichia coli F11]
 gi|194419682|gb|EDX35762.1| tRNA-specific adenosine deaminase [Shigella dysenteriae 1012]
 gi|209762958|gb|ACI79791.1| putative deaminase [Escherichia coli]
 gi|209762960|gb|ACI79792.1| putative deaminase [Escherichia coli]
 gi|209762962|gb|ACI79793.1| putative deaminase [Escherichia coli]
 gi|209762964|gb|ACI79794.1| putative deaminase [Escherichia coli]
 gi|209762966|gb|ACI79795.1| putative deaminase [Escherichia coli]
 gi|218366248|emb|CAR03995.1| tRNA-specific adenosine deaminase [Escherichia coli S88]
 gi|218428238|emb|CAR09014.1| tRNA-specific adenosine deaminase [Escherichia coli ED1a]
 gi|222034264|emb|CAP77005.1| tRNA-specific adenosine deaminase [Escherichia coli LF82]
 gi|226901433|gb|EEH87692.1| tRNA-specific adenosine deaminase [Escherichia sp. 3_2_53FAA]
 gi|290763657|gb|ADD57618.1| tRNA-specific adenosine deaminase [Escherichia coli O55:H7 str.
           CB9615]
 gi|291433476|gb|EFF06455.1| tRNA-specific adenosine deaminase [Escherichia coli B185]
 gi|294489520|gb|ADE88276.1| tRNA-specific adenosine deaminase [Escherichia coli IHE3034]
 gi|300308910|gb|EFJ63430.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 200-1]
 gi|300459125|gb|EFK22618.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 21-1]
 gi|307625893|gb|ADN70197.1| tRNA-specific adenosine deaminase [Escherichia coli UM146]
 gi|308927059|gb|EFP72533.1| tRNA-specific adenosine deaminase [Shigella dysenteriae 1617]
 gi|315288035|gb|EFU47437.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 110-3]
 gi|315300515|gb|EFU59744.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 16-3]
 gi|323188326|gb|EFZ73618.1| tRNA-specific adenosine deaminase [Escherichia coli RN587/1]
 gi|323949213|gb|EGB45104.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Escherichia coli H252]
 gi|324013577|gb|EGB82796.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 60-1]
 gi|326345048|gb|EGD68792.1| tRNA-specific adenosine-34 deaminase [Escherichia coli O157:H7 str.
           1044]
 gi|327252269|gb|EGE63941.1| tRNA-specific adenosine deaminase [Escherichia coli STEC_7v]
 gi|330912330|gb|EGH40840.1| tRNA-specific adenosine-34 deaminase [Escherichia coli AA86]
 gi|331043112|gb|EGI15252.1| tRNA-specific adenosine deaminase [Escherichia coli M605]
 gi|331048843|gb|EGI20919.1| tRNA-specific adenosine deaminase [Escherichia coli M718]
 gi|331054368|gb|EGI26395.1| tRNA-specific adenosine deaminase [Escherichia coli TA206]
          Length = 178

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 60/167 (35%), Gaps = 21/167 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  A+  ++           V  ++V +  VIG G     G      HAE+ AL + 
Sbjct: 20  EYWMRHAMTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQG 77

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +      AT YVTLEPC        CA  +I   I RVV    D     +G  +  
Sbjct: 78  GLVMQNYRLIDATLYVTLEPC------VMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDV 131

Query: 119 LSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           L   G    + +   + ++    L +   R   +      K   S D
Sbjct: 132 LHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD 178


>gi|229067785|ref|ZP_04201104.1| hypothetical protein bcere0025_110 [Bacillus cereus F65185]
 gi|228715338|gb|EEL67195.1| hypothetical protein bcere0025_110 [Bacillus cereus F65185]
          Length = 166

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ A+
Sbjct: 4   DQDIYFMQLAIEEAKKAEEIQE--VPIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  
Sbjct: 62  DEACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTL 115

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +  L     + +  +V  ++E E    L ++ 
Sbjct: 116 MNLLTDERFNHQCEVVSGVLEEECGTLLTSFF 147


>gi|291003336|ref|ZP_06561309.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 250

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 79/198 (39%), Gaps = 15/198 (7%)

Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIG 198
             Y   +  +R  + +    S D  + +    S  ++    +  + L+R  SD +LVG+ 
Sbjct: 19  QFYAYPEALERPWVRVNFVSSLDGAVTIK-GRSRGLSAPEDQRVLGLIRDLSDVVLVGVS 77

Query: 199 TVLAD----------DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           T + +            E   RL GL    P+ ++      L +DS ++   L+ P+++ 
Sbjct: 78  TAVLEGYRGVKRTEVRSERRSRL-GLSPVPPIALV-TRSCSLPVDSPLLTDTLVPPIVLT 135

Query: 249 TENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
            +        A      +++    +  DL   L  L  RG+  +  EGG  +  S + S 
Sbjct: 136 CQAAPADRRAALADAGADVVVAGDEQVDLPAALAALDERGLRRIGCEGGPTLFGSLVESD 195

Query: 307 LVDSIILYRSQIVIGEGG 324
           LVD + L  S ++ G   
Sbjct: 196 LVDELCLTMSPLLAGGDA 213


>gi|257866910|ref|ZP_05646563.1| cytidine/deoxycytidylate deaminase [Enterococcus casseliflavus
           EC30]
 gi|257872573|ref|ZP_05652226.1| cytidine/deoxycytidylate deaminase [Enterococcus casseliflavus
           EC10]
 gi|257800868|gb|EEV29896.1| cytidine/deoxycytidylate deaminase [Enterococcus casseliflavus
           EC30]
 gi|257806737|gb|EEV35559.1| cytidine/deoxycytidylate deaminase [Enterococcus casseliflavus
           EC10]
          Length = 168

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 52/123 (42%), Gaps = 17/123 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
           A FM  A++ +R   GL      +  ++V DG +IGRG     T      HAE+ A+EEA
Sbjct: 13  AFFMEEAIKEARKAEGLAEV--PIGAVVVLDGKIIGRGHNLRETQQQAAAHAEMFAIEEA 70

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                      A  +VTLEPC      P C+  ++   +  V     DP    +G  +  
Sbjct: 71  CRTVGSWRLEQAQLFVTLEPC------PMCSGAMLLARVEEVYFGAYDPKGGTAGTLMNL 124

Query: 119 LSQ 121
           L  
Sbjct: 125 LED 127


>gi|134098447|ref|YP_001104108.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133911070|emb|CAM01183.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 244

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 79/198 (39%), Gaps = 15/198 (7%)

Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIG 198
             Y   +  +R  + +    S D  + +    S  ++    +  + L+R  SD +LVG+ 
Sbjct: 13  QFYAYPEALERPWVRVNFVSSLDGAVTIK-GRSRGLSAPEDQRVLGLIRDLSDVVLVGVS 71

Query: 199 TVLAD----------DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           T + +            E   RL GL    P+ ++      L +DS ++   L+ P+++ 
Sbjct: 72  TAVLEGYRGVKRTEVRSERRSRL-GLSPVPPIALV-TRSCSLPVDSPLLTDTLVPPIVLT 129

Query: 249 TENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
            +        A      +++    +  DL   L  L  RG+  +  EGG  +  S + S 
Sbjct: 130 CQAAPADRRAALADAGADVVVAGDEQVDLPAALAALDERGLRRIGCEGGPTLFGSLVESD 189

Query: 307 LVDSIILYRSQIVIGEGG 324
           LVD + L  S ++ G   
Sbjct: 190 LVDELCLTMSPLLAGGDA 207


>gi|184157936|ref|YP_001846275.1| cytosine/adenosine deaminase [Acinetobacter baumannii ACICU]
 gi|332872773|ref|ZP_08440739.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Acinetobacter baumannii 6014059]
 gi|183209530|gb|ACC56928.1| Cytosine/adenosine deaminase [Acinetobacter baumannii ACICU]
 gi|322508255|gb|ADX03709.1| Putative deaminase [Acinetobacter baumannii 1656-2]
 gi|323517881|gb|ADX92262.1| cytosine/adenosine deaminase [Acinetobacter baumannii TCDC-AB0715]
 gi|332739070|gb|EGJ69931.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Acinetobacter baumannii 6014059]
          Length = 167

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 45/125 (36%), Gaps = 18/125 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M  A   +            V  +IV    +IG G  A  G      HAE+QA+  
Sbjct: 6   DEYWMQLAYEQAELAAKQ--GEIPVGAVIVSQNKLIGAGFNAPIGLSDPTAHAEIQAIRA 63

Query: 63  AGEEAR------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           A E  +       AT YVTLEPC        C   ++   I+ VV    +P         
Sbjct: 64  ACESLKNYRLPEDATLYVTLEPC------TMCVGALVHARIKHVVFGTTEPKAGSLVSAR 117

Query: 117 QWLSQ 121
           Q L  
Sbjct: 118 QLLEN 122


>gi|188584656|ref|YP_001916201.1| tRNA-adenosine deaminase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349343|gb|ACB83613.1| tRNA-adenosine deaminase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 158

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 23/158 (14%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHA 55
           MP  ++ D  +M  A+  ++           +  +IVKD  +I  G     T+     HA
Sbjct: 1   MPSHNNTDKYWMQQAIDQAKLAYN--KGEVPIGAVIVKDEQLIATGFNKRETSQDATSHA 58

Query: 56  EVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A++ A     G      T YVT+EPC      P CA  I++  I ++V   +DP   
Sbjct: 59  EIIAIQSACNYLGGWRLLDCTLYVTIEPC------PMCAGAILQSRITKLVFGTEDPKAW 112

Query: 111 VSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLT 143
                 Q L       +  IV+ + + E K  +  +  
Sbjct: 113 GELSISQLLQNPQLNHQVDIVEGICKEESKDIIKQFFH 150


>gi|322834117|ref|YP_004214144.1| CMP/dCMP deaminase zinc-binding protein [Rahnella sp. Y9602]
 gi|321169318|gb|ADW75017.1| CMP/dCMP deaminase zinc-binding protein [Rahnella sp. Y9602]
          Length = 180

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 51/129 (39%), Gaps = 17/129 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
           + D  +M  A+  +            V  ++V D  VIG G     G      HAE+ AL
Sbjct: 10  NDDEHWMRQAMNLALKAQ--DEGEVPVGAVLVLDNQVIGEGWNRSIGHHDPTAHAEIMAL 67

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            + G   +      AT YVTLEPC        CA  +I   IRRVV    D     +G  
Sbjct: 68  RQGGNAVQNYRLLNATLYVTLEPC------VMCAGAMIHSRIRRVVYGAADAKTGAAGSL 121

Query: 116 LQWLSQKGI 124
           L  L   G+
Sbjct: 122 LDVLRHPGM 130


>gi|229027869|ref|ZP_04184026.1| Uncharacterized deaminase yaaJ [Bacillus cereus AH1271]
 gi|228733445|gb|EEL84270.1| Uncharacterized deaminase yaaJ [Bacillus cereus AH1271]
          Length = 166

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV +G VI        T      HAE+ A+
Sbjct: 4   DQDIYFMQLAIEEAKKAEAIQE--VPIGAVIVLNGEVISVAHNLRETEQRSIAHAELLAI 61

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  
Sbjct: 62  DEACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTL 115

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +  L     + +  +V  ++E E    L  + 
Sbjct: 116 MNLLTDERFNHQCEVVAGVLEKECGTLLTNFF 147


>gi|93006499|ref|YP_580936.1| CMP/dCMP deaminase, zinc-binding [Psychrobacter cryohalolentis K5]
 gi|92394177|gb|ABE75452.1| tRNA-adenosine deaminase [Psychrobacter cryohalolentis K5]
          Length = 197

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 18/129 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
            S  D ++M+ AL+ ++   G       V  ++V +  +IG+G     G      HAE+ 
Sbjct: 36  WSVEDIKWMTEALKLAK--QGAEKEEVPVGAVLVHNQQIIGQGFNEPIGRCDATAHAEIV 93

Query: 59  ALEEAGEEARG------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           AL +A             T YVTLEPC        C   +I   + R+V    +P   V 
Sbjct: 94  ALRDACTRLNNYRLPLKTTLYVTLEPC------TMCMGAMIHARVDRLVYAAHEPRAGVL 147

Query: 113 GRGLQWLSQ 121
           G  +    Q
Sbjct: 148 GSQMNLAEQ 156


>gi|57866115|ref|YP_187800.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
           epidermidis RP62A]
 gi|242241897|ref|ZP_04796342.1| deaminase [Staphylococcus epidermidis W23144]
 gi|251809981|ref|ZP_04824454.1| deaminase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874984|ref|ZP_06283859.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Staphylococcus epidermidis SK135]
 gi|57636773|gb|AAW53561.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
           epidermidis RP62A]
 gi|242234675|gb|EES36987.1| deaminase [Staphylococcus epidermidis W23144]
 gi|251806524|gb|EES59181.1| deaminase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296312|gb|EFA88831.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Staphylococcus epidermidis SK135]
          Length = 168

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 56/147 (38%), Gaps = 22/147 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
           +M  A+  +     L      +  +IVK+  VI R      T      HAE  A+E A E
Sbjct: 7   YMRLAINEAHKAKAL--GEVPIGAVIVKEDQVIARAHNLRETLQQPTAHAEHIAIERASE 64

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                     T YVTLEPC        CA  II   I +VV    DP    SG  +  L 
Sbjct: 65  VVGSWRLEECTLYVTLEPC------VMCAGTIIMSRIPKVVYGATDPKGGCSGSLMNLLE 118

Query: 121 -----QKGIIVDRMMESEGKIFLHAYL 142
                 + I+   ++E E    L ++ 
Sbjct: 119 QPQFNHRAIVEKGILEEECAELLRSFF 145


>gi|212634313|ref|YP_002310838.1| cytidine/deoxycytidylate deaminase [Shewanella piezotolerans WP3]
 gi|212555797|gb|ACJ28251.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Shewanella
           piezotolerans WP3]
          Length = 186

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 58/152 (38%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
             D+RFM  A+  +            V  ++VKDG V+  G     G      HAE+Q +
Sbjct: 18  EDDSRFMKMAMEMAAKAE--EKGEVPVGAVLVKDGEVVSAGFNYSIGLHDPSAHAEMQCI 75

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +AG+          T YVTLEPC+       CA  I+   I R+V   +D     +G  
Sbjct: 76  RQAGQLLENYRLLDTTLYVTLEPCAM------CAGAIVHSRISRLVYGANDEKTGAAGTV 129

Query: 116 LQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
           +  +          +   + +      L A+ 
Sbjct: 130 IDIVRHPAFNHQVEVTAGVRDEACSEQLSAFF 161


>gi|149375103|ref|ZP_01892875.1| cytidine/deoxycytidylate deaminase family protein [Marinobacter
           algicola DG893]
 gi|149360467|gb|EDM48919.1| cytidine/deoxycytidylate deaminase family protein [Marinobacter
           algicola DG893]
          Length = 166

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 53/130 (40%), Gaps = 17/130 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           M  +  D  +MS AL+ +       +    V  ++V DG  IG G  A         HAE
Sbjct: 1   MTGNEEDEAWMSRALQLA--GQAGAAGEVPVGAVVVLDGKEIGTGFNAPISGCDPTAHAE 58

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           ++AL +A          GAT YVTLEPC        C   I+   I R+V    +P    
Sbjct: 59  IRALRDAAARVGNYRLPGATLYVTLEPC------TMCVGAIVHSRISRLVYGAAEPKAGA 112

Query: 112 SGRGLQWLSQ 121
                Q L++
Sbjct: 113 VASARQTLNE 122


>gi|26248923|ref|NP_754963.1| tRNA-specific adenosine deaminase [Escherichia coli CFT073]
 gi|227887593|ref|ZP_04005398.1| tRNA-specific adenosine deaminase [Escherichia coli 83972]
 gi|300982262|ref|ZP_07175973.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 45-1]
 gi|301047197|ref|ZP_07194289.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 185-1]
 gi|312965474|ref|ZP_07779706.1| tRNA-specific adenosine deaminase [Escherichia coli 2362-75]
 gi|26109329|gb|AAN81531.1|AE016764_213 Hypothetical protein yfhC [Escherichia coli CFT073]
 gi|227835943|gb|EEJ46409.1| tRNA-specific adenosine deaminase [Escherichia coli 83972]
 gi|300300874|gb|EFJ57259.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 185-1]
 gi|300408816|gb|EFJ92354.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 45-1]
 gi|307554578|gb|ADN47353.1| tRNA-specific adenosine deaminase [Escherichia coli ABU 83972]
 gi|312289894|gb|EFR17782.1| tRNA-specific adenosine deaminase [Escherichia coli 2362-75]
 gi|315292466|gb|EFU51818.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 153-1]
 gi|324008467|gb|EGB77686.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 57-2]
          Length = 178

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 60/167 (35%), Gaps = 21/167 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  A+  ++           V  ++V +  VIG G     G      HAE+ AL + 
Sbjct: 20  EYWMRHAMTLAKRAWDERE--VPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQG 77

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +      AT YVTLEPC        CA  +I   I RVV    D     +G  +  
Sbjct: 78  GLVMQNYRLIDATLYVTLEPC------VMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDV 131

Query: 119 LSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           L   G    + +   + ++    L +   R   +      K   S D
Sbjct: 132 LHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD 178


>gi|326564207|gb|EGE14443.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis 12P80B1]
          Length = 184

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 54/148 (36%), Gaps = 31/148 (20%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
            S  D   M+ AL  ++           V  ++V +G ++G G     T      HAE+ 
Sbjct: 24  WSMRDVEMMNHALEIAKQGAKF--GEIPVGAVVVYEGRILGEGYNCPITTQDPTAHAEIV 81

Query: 59  ALEEAGE------EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           A+  A E        +G   YVTLEPC        C   +I   I RVV    +P     
Sbjct: 82  AVRRACETLNNYRLPKGCILYVTLEPC------TMCFGALIHARISRVVFGAFEPK---- 131

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHA 140
                     G++V ++   E   + H 
Sbjct: 132 ---------AGVVVSQLKLPEQVFYNHH 150


>gi|229188306|ref|ZP_04315357.1| Uncharacterized deaminase yaaJ [Bacillus cereus ATCC 10876]
 gi|228595174|gb|EEK52942.1| Uncharacterized deaminase yaaJ [Bacillus cereus ATCC 10876]
          Length = 166

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 70/171 (40%), Gaps = 22/171 (12%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV +G VI        T      HAE+ A+
Sbjct: 4   DQDIYFMQLAIEEAKKAEEIQE--VPIGAVIVLNGEVISVAHNLRETEQRSIAHAELLAI 61

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  
Sbjct: 62  DEACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTL 115

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           +  L     + +  +V  ++E E    L ++     +KR  I      + +
Sbjct: 116 MNLLTDERFNHQCEVVSGVLEEECGTLLTSFFRELRKKRKAIKKLEKNTGN 166


>gi|163938030|ref|YP_001642914.1| CMP/dCMP deaminase zinc-binding [Bacillus weihenstephanensis KBAB4]
 gi|163860227|gb|ABY41286.1| CMP/dCMP deaminase zinc-binding [Bacillus weihenstephanensis KBAB4]
          Length = 164

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ A+
Sbjct: 2   ERDIYFMQLAIEEAKKAEAIQE--VPIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 59

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA ++        AT YVTLEPC      P CA  I+   I+RVV    DP    +G  
Sbjct: 60  DEACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRIKRVVYGASDPKGGCAGTL 113

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +  L     + +  +V  ++E E    L  + 
Sbjct: 114 MNLLTDERFNHQCEVVPGVLEEECGTLLTIFF 145


>gi|257876509|ref|ZP_05656162.1| cytidine/deoxycytidylate deaminase [Enterococcus casseliflavus
           EC20]
 gi|257810675|gb|EEV39495.1| cytidine/deoxycytidylate deaminase [Enterococcus casseliflavus
           EC20]
          Length = 168

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 52/123 (42%), Gaps = 17/123 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
           A FM  A++ +R   GL      +  ++V DG +IGRG     T      HAE+ A+EEA
Sbjct: 13  AFFMEEAIKEARKAEGLAEV--PIGAVVVLDGKIIGRGHNLRETQQQAAAHAEMFAIEEA 70

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                      A  +VTLEPC      P C+  ++   +  V     DP    +G  +  
Sbjct: 71  CRTVGSWRLEQAQLFVTLEPC------PMCSGAMLLARVEEVYFGAYDPKGGTAGTLMNL 124

Query: 119 LSQ 121
           L  
Sbjct: 125 LED 127


>gi|190347088|gb|EDK39300.2| hypothetical protein PGUG_03398 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 611

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 10/133 (7%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALE------E 62
           FM  AL  +    G T T  +V  ++V +G V+  G +    G  HAE  ALE       
Sbjct: 459 FMELALSEAEK-CGETQTQFNVGAVLVHEGEVLATGHSRELPGNTHAEQCALEKYFKASN 517

Query: 63  AGEEARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVR-VSGRGLQWLS 120
           + E   G   Y T+EPCS     + PC Q I++  I+   V V +PD        L+ LS
Sbjct: 518 STEVPEGTVIYTTMEPCSFRLSGNEPCVQRILKTCIKTCFVGVIEPDTFVKDNSSLRQLS 577

Query: 121 QKGIIVDRMMESE 133
             G+    +   E
Sbjct: 578 DNGVDYVHIGGYE 590


>gi|146416095|ref|XP_001484017.1| hypothetical protein PGUG_03398 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 611

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 10/133 (7%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALE------E 62
           FM  AL  +    G T T  +V  ++V +G V+  G +    G  HAE  ALE       
Sbjct: 459 FMELALSEAEK-CGETQTQFNVGAVLVHEGEVLATGHSRELPGNTHAEQCALEKYFKASN 517

Query: 63  AGEEARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVR-VSGRGLQWLS 120
           + E   G   Y T+EPCS     + PC Q I++  I+   V V +PD        L+ LS
Sbjct: 518 STEVPEGTVIYTTMEPCSFRLSGNEPCVQRILKTCIKTCFVGVIEPDTFVKDNSSLRQLS 577

Query: 121 QKGIIVDRMMESE 133
             G+    +   E
Sbjct: 578 DNGVDYVHIGGYE 590


>gi|229083334|ref|ZP_04215694.1| hypothetical protein bcere0022_180 [Bacillus cereus Rock3-44]
 gi|228699981|gb|EEL52606.1| hypothetical protein bcere0022_180 [Bacillus cereus Rock3-44]
          Length = 165

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV DG V+        T      HAE+ A+
Sbjct: 2   EQDIYFMQLAIEEAKKAEEIQE--VPIGAVIVLDGEVVSVAHNLRETEQRSIAHAELLAI 59

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  
Sbjct: 60  DEACKKLGTWRLENATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTL 113

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +  L     + +  +V  +ME E    L  + 
Sbjct: 114 MNLLTDERFNHQCEVVSGVMEEECGTLLTNFF 145


>gi|218706062|ref|YP_002413581.1| tRNA -specific adenosine deaminase [Escherichia coli UMN026]
 gi|293406001|ref|ZP_06649993.1| tRNA-specific adenosine deaminase [Escherichia coli FVEC1412]
 gi|298381801|ref|ZP_06991400.1| tRNA-specific adenosine deaminase [Escherichia coli FVEC1302]
 gi|300898326|ref|ZP_07116674.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 198-1]
 gi|218433159|emb|CAR14055.1| tRNA-specific adenosine deaminase [Escherichia coli UMN026]
 gi|284922509|emb|CBG35596.1| tRNA-specific adenosine deaminase [Escherichia coli 042]
 gi|291428209|gb|EFF01236.1| tRNA-specific adenosine deaminase [Escherichia coli FVEC1412]
 gi|298279243|gb|EFI20757.1| tRNA-specific adenosine deaminase [Escherichia coli FVEC1302]
 gi|300357988|gb|EFJ73858.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Escherichia coli MS 198-1]
          Length = 178

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 60/167 (35%), Gaps = 21/167 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  A+  ++           V  ++V +  VIG G     G      HAE+ AL + 
Sbjct: 20  EYWMRHAMTLAKRAWDERE--VPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQG 77

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +      AT YVTLEPC        CA  +I   I RVV    D     +G  +  
Sbjct: 78  GLVMQNYRLIDATLYVTLEPC------VMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDV 131

Query: 119 LSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           L   G    + +   + ++    L +   R   +      K   S D
Sbjct: 132 LHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIKAQKKARSSTD 178


>gi|314932786|ref|ZP_07840155.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
           caprae C87]
 gi|313654467|gb|EFS18220.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
           caprae C87]
          Length = 168

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 59/156 (37%), Gaps = 22/156 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEE 62
           D  +M  A++ ++    L      +  +IVK+  VI               HAE  A+E 
Sbjct: 4   DKDYMRLAIKEAQKAQAL--GEVPIGAVIVKNDQVIAHAHNLRESLQLPTAHAEHIAIER 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +          T YVTLEPC        CA  I+   I RVV    DP    +G  + 
Sbjct: 62  ASKVVGSWRLEECTLYVTLEPC------VMCAGAIVMSRIPRVVYGAVDPKGGCTGSLMN 115

Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEK 148
            L       + I+   ++E+E    L  +     ++
Sbjct: 116 LLEKPQFNHRAIVESGILENECSTLLRDFFKNIRQQ 151


>gi|229165011|ref|ZP_04292809.1| hypothetical protein bcere0007_110 [Bacillus cereus AH621]
 gi|228618463|gb|EEK75490.1| hypothetical protein bcere0007_110 [Bacillus cereus AH621]
          Length = 164

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ A+
Sbjct: 2   ERDIYFMQLAIEEAKKAEAIQE--VPIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 59

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA ++        AT YVTLEPC      P CA  I+   I+RV+    DP    +G  
Sbjct: 60  DEACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRIKRVIYGASDPKGGCAGTL 113

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +  L     + +  +V  ++E E    L  + 
Sbjct: 114 MNLLTDERFNHQCEVVPGVLEEECGTLLTIFF 145


>gi|169796135|ref|YP_001713928.1| putative deaminase [Acinetobacter baumannii AYE]
 gi|301597400|ref|ZP_07242408.1| putative deaminase [Acinetobacter baumannii AB059]
 gi|169149062|emb|CAM86939.1| putative deaminase [Acinetobacter baumannii AYE]
          Length = 167

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 45/125 (36%), Gaps = 18/125 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M  A   +            V  +IV    +IG G  A  G      HAE+QA+  
Sbjct: 6   DEYWMQLAYEQAELAAKQ--GEIPVGAVIVSQNKLIGAGFNAPIGLSDPTAHAEIQAIRA 63

Query: 63  AGEEAR------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           A E  +       AT YVTLEPC        C   ++   I+ VV    +P         
Sbjct: 64  ACESLKNYRLPEDATLYVTLEPC------TMCVGALVHARIKHVVFGTTEPKAGSLVSAR 117

Query: 117 QWLSQ 121
           Q L  
Sbjct: 118 QLLEN 122


>gi|296276694|ref|ZP_06859201.1| putative tRNA-specific adenosine deaminase [Staphylococcus aureus
           subsp. aureus MR1]
          Length = 156

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 57/150 (38%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  FM+ A+  ++    L      +  +I KD  VI R      T      HAE  A+E 
Sbjct: 4   DIYFMTLAIEEAKKAAQL--GEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIER 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +        G T YVTLEPC        CA  I+   I RVV   DDP    S   + 
Sbjct: 62  AAKVLGSWRLEGCTLYVTLEPC------VMCAGTIVMSRIPRVVYGADDPKGGCSSSLMN 115

Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYL 142
            L       + I+   +++      L  + 
Sbjct: 116 LLQQSNFNHRAIVDKGVLKEACSTLLTTFF 145


>gi|30018294|ref|NP_829925.1| cytosine deaminase [Bacillus cereus ATCC 14579]
 gi|229125538|ref|ZP_04254572.1| hypothetical protein bcere0015_100 [Bacillus cereus BDRD-Cer4]
 gi|29893834|gb|AAP07126.1| Cytosine deaminase [Bacillus cereus ATCC 14579]
 gi|228657922|gb|EEL13726.1| hypothetical protein bcere0015_100 [Bacillus cereus BDRD-Cer4]
          Length = 166

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV DG VI        T      HAE+ A+
Sbjct: 4   DQDIYFMQLAIEEAKKAEEIQE--VPIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           ++A ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  
Sbjct: 62  DDACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTL 115

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +  L     + +  +V  ++E E    L  + 
Sbjct: 116 MNLLTDERFNHQCEVVSGVLEEECGTLLTNFF 147


>gi|85712706|ref|ZP_01043751.1| Cytosine/adenosine deaminase putative [Idiomarina baltica OS145]
 gi|85693438|gb|EAQ31391.1| Cytosine/adenosine deaminase putative [Idiomarina baltica OS145]
          Length = 179

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 17/126 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
           + D  +M  AL  +            V  ++V + +++G G     T      HAE QA+
Sbjct: 16  TTDEIYMQRALELAHKAA--DEDEVPVGAVLVLNDMIVGEGYNQVITLSDPSAHAEAQAI 73

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             AG+         +T YVTLEPC+       CA  I    ++R+V    DP    +G  
Sbjct: 74  RAAGKNVDNYRLTDSTLYVTLEPCAM------CAGLITHARVKRLVFGAPDPRTGATGTA 127

Query: 116 LQWLSQ 121
           ++ L+ 
Sbjct: 128 IEVLNH 133


>gi|149182698|ref|ZP_01861165.1| probable cytidine/deoxycytidylate deaminase family protein
           [Bacillus sp. SG-1]
 gi|148849608|gb|EDL63791.1| probable cytidine/deoxycytidylate deaminase family protein
           [Bacillus sp. SG-1]
          Length = 173

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 64/176 (36%), Gaps = 22/176 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
             FM  A+  ++           +  ++V DG VI        T      HAE+ A+EEA
Sbjct: 6   EYFMKLAIDEAKKAEDKAE--VPIGAVVVLDGEVIASAHNLRETTQNAVTHAELLAIEEA 63

Query: 64  GEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            ++        A  YVTLEPC      P C+  II   I+ VV    DP    +G  +  
Sbjct: 64  CKKLGTWRLENAELYVTLEPC------PMCSGAIILSRIKTVVYGAPDPKAGCAGTLMNL 117

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC 169
           L       +  +V  +++ E    L  +      ++     +     +   G+   
Sbjct: 118 LEDDRFNHQCEVVPGVLQEECGQLLTHFFRGLRARKKEEKKRRKAEMEQHTGIDNG 173


>gi|288549944|ref|ZP_05968716.2| tRNA-specific adenosine deaminase [Enterobacter cancerogenus ATCC
           35316]
 gi|288317287|gb|EFC56225.1| tRNA-specific adenosine deaminase [Enterobacter cancerogenus ATCC
           35316]
          Length = 168

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 23/176 (13%)

Query: 1   MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
           M     D   +M  AL  ++           V  ++V +  VIG G     G      HA
Sbjct: 1   MSNPERDHEYWMRHALTLAQRAW--EEGEVPVGAVLVHNNQVIGEGWNRPIGRHDPTAHA 58

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ AL + G   +       T YVTLEPC        C+  ++   I  +V    D    
Sbjct: 59  EIMALRQGGLVMQNYRLLDTTLYVTLEPC------VMCSGAMVHSRIGTLVFGARDEKTG 112

Query: 111 VSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
            +G  +  L   G+     I+  ++  E    L  +   + +++     ++  S D
Sbjct: 113 AAGSLMDVLGHPGMNHQVKIIGGVLAPECSGLLSDFFRMRRQQKKQQKAELTRSDD 168


>gi|282600107|ref|ZP_05973017.2| tRNA-specific adenosine deaminase [Providencia rustigianii DSM
           4541]
 gi|282566416|gb|EFB71951.1| tRNA-specific adenosine deaminase [Providencia rustigianii DSM
           4541]
          Length = 176

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 17/128 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
             D  +M+ A+  ++    +      V  L+VKD  +I  G       +    HAE+  L
Sbjct: 14  EIDEYWMAQAIELAKQAQDI--GEIPVGALLVKDNQLIATGWNHSIEQHDPTAHAEIITL 71

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           ++AG+  +       T YVTLEPC        CA  +I   I RVV    D      G  
Sbjct: 72  QQAGKILKNYRLLDTTLYVTLEPCIM------CAGAMIHSRIGRVVYGAKDFKTGACGSF 125

Query: 116 LQWLSQKG 123
           +  + Q G
Sbjct: 126 INIMGQAG 133


>gi|297838639|ref|XP_002887201.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297333042|gb|EFH63460.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1135

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 68/190 (35%), Gaps = 18/190 (9%)

Query: 5    SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
            + D  FM  AL  ++     T   P V  ++V DG +I RG            HAE+  +
Sbjct: 937  TVDEIFMREALVEAKKAA-DTWEVP-VGAVLVHDGKIIARGYNLVEELRDSTAHAEMICI 994

Query: 61   EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             E  +  R       T YVTLEPC      P CA  I++  +  +V    +  +   G  
Sbjct: 995  REGSKALRSWRLADTTLYVTLEPC------PMCAGAILQARVNTLVWGAPNKLLGADGSW 1048

Query: 116  LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
            ++ L   G      +  +    +H +  +   +R  +  + A +      +        +
Sbjct: 1049 IR-LFPGGEGNGSEVSEKPPPPVHPFHPKMTIRRGVLESECAQTMQQFFQLRRKKKDKNS 1107

Query: 176  GFISKNQVHL 185
               +    H 
Sbjct: 1108 DPPTPTDHHH 1117


>gi|149196365|ref|ZP_01873420.1| Putative cytosine/adenosine deaminase [Lentisphaera araneosa
           HTCC2155]
 gi|149140626|gb|EDM29024.1| Putative cytosine/adenosine deaminase [Lentisphaera araneosa
           HTCC2155]
          Length = 174

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 55/150 (36%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
           D  +M  ALR +          P +  ++V +G VI +             HAE+ AL +
Sbjct: 20  DEHYMRMALRQAEQA-FQAGEVP-IGAVVVHEGEVIAKAWNQVEMLKDATAHAEILALTQ 77

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A          G T YVT EPC      P CA  ++   I RVV  + D      G    
Sbjct: 78  ASAHLDRWRLHGCTLYVTKEPC------PMCAGALVNSRIDRVVFGLADEKGGGCGGSFH 131

Query: 118 WLSQKGII-----VDRMMESEGKIFLHAYL 142
                G++          E E ++ + ++ 
Sbjct: 132 IHDHDGLLHKVKSEGHCCEDECRLLIQSFF 161


>gi|82702354|ref|YP_411920.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Nitrosospira multiformis ATCC 25196]
 gi|82410419|gb|ABB74528.1| tRNA-adenosine deaminase [Nitrosospira multiformis ATCC 25196]
          Length = 163

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 60/154 (38%), Gaps = 22/154 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           ++S DA FM  AL  S       +    V  ++V++G ++GRG            HAEV 
Sbjct: 1   MNSSDAGFMHVALELSAQAEQ--AGEVPVGAIVVRNGTIVGRGYNCPISTSDPTAHAEVM 58

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL +AG           T YVTLEPC+       C   I    I R+V    DP     G
Sbjct: 59  ALRDAGRHLGNYRLGDCTLYVTLEPCAM------CMGAIFHARIARLVYGAADPKTGACG 112

Query: 114 RGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
             +       L+    +   ++  EG   L  + 
Sbjct: 113 SVINLSAELRLNHHLQVTRGVLAEEGGYKLKQFF 146


>gi|30260212|ref|NP_842589.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing
           protein [Bacillus anthracis str. Ames]
 gi|47525273|ref|YP_016622.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing
           protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183056|ref|YP_026308.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing
           protein [Bacillus anthracis str. Sterne]
 gi|49481561|ref|YP_034377.1| cytidine/deoxycytidylate deaminase family protein [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|65317484|ref|ZP_00390443.1| COG0590: Cytosine/adenosine deaminases [Bacillus anthracis str.
           A2012]
 gi|118475795|ref|YP_892946.1| tRNA-adenosine deaminase [Bacillus thuringiensis str. Al Hakam]
 gi|165873229|ref|ZP_02217840.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. A0488]
 gi|167635069|ref|ZP_02393386.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. A0442]
 gi|167642053|ref|ZP_02400280.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. A0193]
 gi|170688894|ref|ZP_02880096.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. A0465]
 gi|170707544|ref|ZP_02897997.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. A0389]
 gi|177655687|ref|ZP_02937012.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. A0174]
 gi|190569336|ref|ZP_03022228.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis Tsiankovskii-I]
 gi|196036359|ref|ZP_03103756.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus W]
 gi|196041943|ref|ZP_03109230.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus NVH0597-99]
 gi|196047685|ref|ZP_03114889.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus 03BB108]
 gi|218901223|ref|YP_002449057.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus AH820]
 gi|225862074|ref|YP_002747452.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus 03BB102]
 gi|227812695|ref|YP_002812704.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. CDC 684]
 gi|228912760|ref|ZP_04076409.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228925275|ref|ZP_04088373.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931524|ref|ZP_04094432.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228943828|ref|ZP_04106215.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229089154|ref|ZP_04220437.1| Uncharacterized deaminase yaaJ [Bacillus cereus Rock3-42]
 gi|229119684|ref|ZP_04248947.1| Uncharacterized deaminase yaaJ [Bacillus cereus 95/8201]
 gi|229182416|ref|ZP_04309669.1| Uncharacterized deaminase yaaJ [Bacillus cereus BGSC 6E1]
 gi|229604522|ref|YP_002864673.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. A0248]
 gi|254686610|ref|ZP_05150469.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. CNEVA-9066]
 gi|254724163|ref|ZP_05185948.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. A1055]
 gi|254737002|ref|ZP_05194707.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. Western North America USA6153]
 gi|254744200|ref|ZP_05201881.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. Kruger B]
 gi|254751191|ref|ZP_05203230.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. Vollum]
 gi|254761661|ref|ZP_05213679.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. Australia 94]
 gi|30253533|gb|AAP24075.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. Ames]
 gi|47500421|gb|AAT29097.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|49176983|gb|AAT52359.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. Sterne]
 gi|49333117|gb|AAT63763.1| probable cytidine/deoxycytidylate deaminase family protein
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|118415020|gb|ABK83439.1| tRNA-adenosine deaminase [Bacillus thuringiensis str. Al Hakam]
 gi|164711027|gb|EDR16593.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. A0488]
 gi|167509987|gb|EDR85406.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. A0193]
 gi|167529543|gb|EDR92293.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. A0442]
 gi|170127540|gb|EDS96414.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. A0389]
 gi|170667118|gb|EDT17879.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. A0465]
 gi|172080027|gb|EDT65127.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. A0174]
 gi|190559558|gb|EDV13551.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis Tsiankovskii-I]
 gi|195990989|gb|EDX54960.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus W]
 gi|196021470|gb|EDX60173.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus 03BB108]
 gi|196027198|gb|EDX65818.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus NVH0597-99]
 gi|218537868|gb|ACK90266.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus AH820]
 gi|225787894|gb|ACO28111.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus cereus 03BB102]
 gi|227005774|gb|ACP15517.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. CDC 684]
 gi|228601062|gb|EEK58629.1| Uncharacterized deaminase yaaJ [Bacillus cereus BGSC 6E1]
 gi|228663775|gb|EEL19352.1| Uncharacterized deaminase yaaJ [Bacillus cereus 95/8201]
 gi|228694177|gb|EEL47857.1| Uncharacterized deaminase yaaJ [Bacillus cereus Rock3-42]
 gi|228815852|gb|EEM62086.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228828142|gb|EEM73868.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228834389|gb|EEM79928.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228846887|gb|EEM91890.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268930|gb|ACQ50567.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus anthracis str. A0248]
          Length = 166

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV +G VI        T      HAE+ A+
Sbjct: 4   DQDIYFMQLAIEEAKKAEAIQE--VPIGAVIVLNGEVISAAHNLRETEQRSIAHAELLAI 61

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  
Sbjct: 62  DEACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGAGDPKGGCAGTL 115

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +  L     + +  +V  ++E E    L  + 
Sbjct: 116 MNLLTDERFNHQCEVVAGVLEEECGTLLTNFF 147


>gi|303243154|ref|ZP_07329591.1| CMP/dCMP deaminase zinc-binding [Acetivibrio cellulolyticus CD2]
 gi|302589304|gb|EFL59115.1| CMP/dCMP deaminase zinc-binding [Acetivibrio cellulolyticus CD2]
          Length = 154

 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 22/147 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           FM  AL+ ++       T   V  +IVKDG++I RG            HAE+ A+++A +
Sbjct: 7   FMKEALKEAKKAYKKDET--PVGAVIVKDGVIISRGHNEKEMKNDPTLHAEISAIKKACK 64

Query: 66  E-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL- 119
           +           YVTLEPC+       CA  II+  + R+ +   DP     G  +  L 
Sbjct: 65  KLNTWRLNDCDLYVTLEPCAM------CAGAIIQARVGRLFIGTPDPKAGAVGSVVDILG 118

Query: 120 ----SQKGIIVDRMMESEGKIFLHAYL 142
               + K  +   ++  E  + L  + 
Sbjct: 119 VEKFNHKVEVFYGLLMEECSMILKDFF 145


>gi|284023569|ref|ZP_06377967.1| putative tRNA-specific adenosine deaminase [Staphylococcus aureus
           subsp. aureus 132]
          Length = 156

 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 58/150 (38%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  FM+ A+  ++    L      +  +I KD  VI R      T      HAE  A+E 
Sbjct: 4   DIFFMTLAIEEAKKAAQL--GEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIER 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +        G T YVTLEPC        CA  I+   I RVV   DDP    SG  + 
Sbjct: 62  AAKVLGSWRLEGCTLYVTLEPC------VMCAGTIVMSRIPRVVYGADDPKGGCSGSLMN 115

Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYL 142
            L       + I+   +++      L  + 
Sbjct: 116 LLQQSNFNHRAIVDKGVLKEACSTLLTTFF 145


>gi|85857921|ref|YP_460123.1| tRNA-specific adenosine deaminase [Syntrophus aciditrophicus SB]
 gi|85721012|gb|ABC75955.1| tRNA-specific adenosine deaminase [Syntrophus aciditrophicus SB]
          Length = 187

 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 17/126 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
             D R+M  AL  +R     +     +  +IV++  VI R        +    HAE+ A+
Sbjct: 26  DHDERWMRLALEEARLAA--SEGEVPIGAVIVRENEVIARSHNMPVDRHDPTAHAEILAI 83

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            EA E+ +     G T YVTLEPC        CA  I++  ++R+V    DP        
Sbjct: 84  REAAEKMKNYRLTGMTLYVTLEPCIM------CAGAILQARLKRLVYGTGDPKGGAVDSL 137

Query: 116 LQWLSQ 121
            + L  
Sbjct: 138 YRLLQD 143


>gi|15221490|ref|NP_177039.1| TADA (TRNA ARGININE ADENOSINE DEAMINASE); catalytic/ hydrolase/ zinc
            ion binding [Arabidopsis thaliana]
 gi|75336834|sp|Q9S7I0|TADA_ARATH RecName: Full=tRNA-specific adenosine deaminase, chloroplastic;
            Short=TADA; Flags: Precursor
 gi|5734706|gb|AAD49971.1|AC008075_4 Contains similarity to gi|3329316 cytosine deaminase from Chlamydia
            trachomatis genome gb|AE001357 and contains a PF|00383
            cytidine deaminase zinc-binding region. EST gb|W43306
            comes from this gene [Arabidopsis thaliana]
 gi|12324145|gb|AAG52046.1|AC011914_16 unknown protein; 92941-88668 [Arabidopsis thaliana]
 gi|332196710|gb|AEE34831.1| tRNA-specific adenosine deaminase [Arabidopsis thaliana]
          Length = 1307

 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 50/124 (40%), Gaps = 17/124 (13%)

Query: 5    SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
            + D  FM  AL  ++     T   P V  ++V DG +I RG            HAE+  +
Sbjct: 1108 TVDEIFMREALVEAKKAA-DTWEVP-VGAVLVHDGKIIARGYNLVEELRDSTAHAEMICI 1165

Query: 61   EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             E  +  R       T YVTLEPC      P CA  I++  +  +V    +  +   G  
Sbjct: 1166 REGSKALRSWRLADTTLYVTLEPC------PMCAGAILQARVNTLVWGAPNKLLGADGSW 1219

Query: 116  LQWL 119
            ++  
Sbjct: 1220 IRLF 1223


>gi|26450841|dbj|BAC42528.1| putative deaminase [Arabidopsis thaliana]
 gi|38564244|gb|AAR23701.1| At1g68720 [Arabidopsis thaliana]
          Length = 1307

 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 50/124 (40%), Gaps = 17/124 (13%)

Query: 5    SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
            + D  FM  AL  ++     T   P V  ++V DG +I RG            HAE+  +
Sbjct: 1108 TVDEIFMREALVEAKKAA-DTWEVP-VGAVLVHDGKIIARGYNLVEELRDSTAHAEMICI 1165

Query: 61   EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             E  +  R       T YVTLEPC      P CA  I++  +  +V    +  +   G  
Sbjct: 1166 REGSKALRSWRLADTTLYVTLEPC------PMCAGAILQARVNTLVWGAPNKLLGADGSW 1219

Query: 116  LQWL 119
            ++  
Sbjct: 1220 IRLF 1223


>gi|146312685|ref|YP_001177759.1| tRNA-specific adenosine deaminase [Enterobacter sp. 638]
 gi|145319561|gb|ABP61708.1| tRNA-adenosine deaminase [Enterobacter sp. 638]
          Length = 169

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 61/166 (36%), Gaps = 22/166 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL + 
Sbjct: 9   EYWMRHALLLAKRAW--DEGEVPVGAVLVHNNQVIGEGWNRPIGRHDPTAHAEIMALRQG 66

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +       T YVTLEPC        C+  ++   I  +V    D     +G  +  
Sbjct: 67  GLVLQNYRLLDTTLYVTLEPC------VMCSGAMVHSRIGTLVFGARDEKTGAAGSLMNV 120

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
           L   G+     ++D ++  E    L  +   + +++     +   S
Sbjct: 121 LGHPGMNHQVQVIDGVLAPECSGLLSDFFRMRRQQKKQQKAESTSS 166


>gi|313616657|gb|EFR89453.1| tRNA-specific adenosine deaminase [Listeria innocua FSL S4-378]
          Length = 156

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
            FM  AL  ++    +      +  ++V DG +IGR      T      HAE+ A+E+A 
Sbjct: 5   FFMQQALEEAKKAREI--GEVPIGAVVVLDGEIIGRAHNLRETTQNAVTHAELLAIEDAC 62

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           +        GA  YVTLEPC      P C+  I+   I +V     DP    +G  +  L
Sbjct: 63  KHQNSWRLSGAELYVTLEPC------PMCSGAILLSRIDKVYYGAKDPKAGTAGSLMNLL 116

Query: 120 S-----QKGIIVDRMMESEGKIFLHAYL 142
                     +   ++E+E    L ++ 
Sbjct: 117 QDDRFNHTCKVEAGLLEAESSAMLKSFF 144


>gi|312173235|emb|CBX81490.1| tRNA-specific adenosine deaminase [Erwinia amylovora ATCC BAA-2158]
          Length = 166

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 55/150 (36%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M  ALR +R           V  ++V D  VIG G     G      HAE+ AL +
Sbjct: 6   DEYWMRHALRLARRAW--DEGEVPVGAVLVLDNQVIGEGWNRPIGHHDPTAHAEMMALRQ 63

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            G+          T YVTLEPC        CA  +I   I R+V    D     +G  L 
Sbjct: 64  GGKMIENYRLLDTTLYVTLEPC------VMCAGAMIHSRIGRLVYGARDAKTGAAGSLLD 117

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYL 142
            L   G+         ++  E    L  + 
Sbjct: 118 VLGHPGMNHQVPAECGLLNDECAAMLSDFF 147


>gi|152973870|ref|YP_001373387.1| CMP/dCMP deaminase zinc-binding [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152022622|gb|ABS20392.1| CMP/dCMP deaminase zinc-binding [Bacillus cytotoxicus NVH 391-98]
          Length = 164

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  ++V DG VI        T      HAE+ A+
Sbjct: 2   EQDMYFMKLAIEEAKKAEKI--EEVPIGAVLVLDGKVISSAHNLRETEQRSIAHAELLAI 59

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           ++A +         AT YVTLEPC      P CA  I+   ++RVV    DP    +G  
Sbjct: 60  DKACKALGTWRLEHATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTL 113

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +  L     + +  +V  +ME E    L ++ 
Sbjct: 114 MNLLTDERFNHQCEVVSGVMEEECGALLTSFF 145


>gi|332851789|ref|ZP_08433714.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Acinetobacter baumannii 6013150]
 gi|332865831|ref|ZP_08436615.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Acinetobacter baumannii 6013113]
 gi|332729796|gb|EGJ61131.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Acinetobacter baumannii 6013150]
 gi|332735043|gb|EGJ66128.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Acinetobacter baumannii 6013113]
          Length = 170

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 45/125 (36%), Gaps = 18/125 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M  A   +            V  +IV    +IG G  A  G      HAE+QA+  
Sbjct: 6   DEYWMQLAYEQAELAA--EQGEIPVGAVIVSQNKLIGAGFNAPIGLSDPTAHAEIQAIRA 63

Query: 63  AGEEAR------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           A E  +       AT YVTLEPC        C   ++   I+ VV    +P         
Sbjct: 64  ACESLKNYRLPEDATLYVTLEPC------TMCVGALVHARIKHVVFGTTEPKAGSLVSAR 117

Query: 117 QWLSQ 121
           Q L  
Sbjct: 118 QLLEN 122


>gi|260555185|ref|ZP_05827406.1| cytosine/adenosine deaminase [Acinetobacter baumannii ATCC 19606]
 gi|260411727|gb|EEX05024.1| cytosine/adenosine deaminase [Acinetobacter baumannii ATCC 19606]
          Length = 167

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 45/125 (36%), Gaps = 18/125 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M  A   +            V  +IV    +IG G  A  G      HAE+QA+  
Sbjct: 6   DEYWMQLAYEQAELAA--EQGEIPVGAVIVSQNKLIGAGFNAPIGLSDPTAHAEIQAIRA 63

Query: 63  AGEEAR------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           A E  +       AT YVTLEPC        C   ++   I+ VV    +P         
Sbjct: 64  ACESLKNYRLPEDATLYVTLEPC------TMCVGALVHARIKHVVFGTTEPKAGSLVSAR 117

Query: 117 QWLSQ 121
           Q L  
Sbjct: 118 QLLEN 122


>gi|325144274|gb|EGC66579.1| tRNA-specific adenosine deaminase [Neisseria meningitidis
           M01-240013]
          Length = 239

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 61/156 (39%), Gaps = 22/156 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P       FM  ALR +            V  +IV DG +I               HAE+
Sbjct: 87  PPQEEMEHFMREALRQAEQSA--ADGEIPVGAVIVSDGKIIASAHNTCIADCNVSCHAEI 144

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+    +P    +
Sbjct: 145 NALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGAAEPKTGAA 198

Query: 113 GRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLT 143
           G  +       L+    I   +++ E +  L+ +  
Sbjct: 199 GSIVNLFADKRLNTHTAIRGGILQEECRAVLNRFFQ 234


>gi|301510605|ref|ZP_07235842.1| putative deaminase [Acinetobacter baumannii AB058]
          Length = 167

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 45/125 (36%), Gaps = 18/125 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M  A   +            V  +IV    +IG G  A  G      HAE+QA+  
Sbjct: 6   DEYWMQLAYEQAELAAKQ--GEIPVGAVIVSQNKLIGAGFNAPIGLSDPTAHAEIQAIRA 63

Query: 63  AGEEAR------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           A E  +       AT YVTLEPC        C   ++   I+ VV    +P         
Sbjct: 64  ACESLKNYRLPEDATLYVTLEPC------TMCVGALVHARIKHVVFGTTEPKAGSLVSAR 117

Query: 117 QWLSQ 121
           Q L  
Sbjct: 118 QLLEN 122


>gi|303320905|ref|XP_003070447.1| Cytidine and deoxycytidylate deaminase zinc-binding domain
           containing protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240110143|gb|EER28302.1| Cytidine and deoxycytidylate deaminase zinc-binding domain
           containing protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320033053|gb|EFW15002.1| tRNA-specific adenosine deaminase subunit TAD2 [Coccidioides
           posadasii str. Silveira]
          Length = 207

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 74/186 (39%), Gaps = 26/186 (13%)

Query: 1   MPVSSFD----ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGC 52
           M  +S D     +FM  AL+ +   + +  T   V C++V DG VIGRG+        G 
Sbjct: 18  MADTSADDPAHEQFMREALQMAEQALAIGET--PVGCVLVHDGKVIGRGMNDTNRSLNGT 75

Query: 53  PHAEVQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
            HAE  A+EEA         R    YVT+EPC        CA  + +  IRRV     + 
Sbjct: 76  RHAEFLAIEEALRSYPRSIFRTTDLYVTVEPCIM------CASLLRQNYIRRVFFGCVND 129

Query: 108 DVRVSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
               +G  L   S + I     +   +  +E  + L  +  ++ EK  +   K       
Sbjct: 130 RFGGTGGVLNLHSDRAIDPPYTVYGGIFRNEAIMLLRRFYIQENEKAPNPRPKSNRELKR 189

Query: 163 MIGMAG 168
            +  A 
Sbjct: 190 KLDDAD 195


>gi|165975988|ref|YP_001651581.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|190149887|ref|YP_001968412.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307247548|ref|ZP_07529592.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307252128|ref|ZP_07534027.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307256596|ref|ZP_07538377.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307261030|ref|ZP_07542712.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|307263211|ref|ZP_07544831.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|165876089|gb|ABY69137.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|189915018|gb|ACE61270.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306855913|gb|EFM88072.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306860428|gb|EFM92442.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306865006|gb|EFM96908.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306869332|gb|EFN01127.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306871428|gb|EFN03152.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 196

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 50/131 (38%), Gaps = 18/131 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHA 55
           + +S  D  FM  AL  +     +      V  ++V  +G +IG G            HA
Sbjct: 34  LTISEQDIHFMRYALELADRAEAI--GEIPVGAVLVDQEGNIIGEGWNQVIQLSDPSAHA 91

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+ +AG+  R       T YVTLEPC        CA  I+   +RR+V    D    
Sbjct: 92  EMLAIRQAGKVQRNYRLLDCTLYVTLEPC------TMCAGAILHSRLRRLVFGASDYKTG 145

Query: 111 VSGRGLQWLSQ 121
             G        
Sbjct: 146 AIGSRFHLFED 156


>gi|168757783|ref|ZP_02782790.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4401]
 gi|168768660|ref|ZP_02793667.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4486]
 gi|188024727|ref|ZP_02773396.2| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4113]
 gi|189403941|ref|ZP_02786184.2| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4501]
 gi|195936706|ref|ZP_03082088.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4024]
 gi|208806459|ref|ZP_03248796.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812941|ref|ZP_03254270.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820370|ref|ZP_03260690.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400171|ref|YP_002272033.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4115]
 gi|215487903|ref|YP_002330334.1| tRNA-specific adenosine deaminase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217327122|ref|ZP_03443205.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           TW14588]
 gi|254794508|ref|YP_003079345.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           TW14359]
 gi|261223005|ref|ZP_05937286.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261259444|ref|ZP_05951977.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|306814377|ref|ZP_07448539.1| tRNA-specific adenosine deaminase [Escherichia coli NC101]
 gi|150421686|sp|Q8XA44|TADA_ECO57 RecName: Full=tRNA-specific adenosine deaminase
 gi|150421687|sp|Q8FF24|TADA_ECOL6 RecName: Full=tRNA-specific adenosine deaminase
 gi|188017152|gb|EDU55274.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4113]
 gi|189355294|gb|EDU73713.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362211|gb|EDU80630.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368357|gb|EDU86773.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4501]
 gi|208726260|gb|EDZ75861.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734218|gb|EDZ82905.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740493|gb|EDZ88175.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161571|gb|ACI39004.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           EC4115]
 gi|215265975|emb|CAS10384.1| tRNA-specific adenosine deaminase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217319489|gb|EEC27914.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           TW14588]
 gi|254593908|gb|ACT73269.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           TW14359]
 gi|305851771|gb|EFM52223.1| tRNA-specific adenosine deaminase [Escherichia coli NC101]
 gi|312947130|gb|ADR27957.1| tRNA-specific adenosine deaminase [Escherichia coli O83:H1 str. NRG
           857C]
 gi|320180559|gb|EFW55490.1| tRNA-specific adenosine-34 deaminase [Shigella boydii ATCC 9905]
 gi|320188900|gb|EFW63559.1| tRNA-specific adenosine-34 deaminase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320640908|gb|EFX10396.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           G5101]
 gi|320646350|gb|EFX15277.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H- str.
           493-89]
 gi|320651530|gb|EFX19917.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H- str. H
           2687]
 gi|320657241|gb|EFX25050.1| tRNA-specific adenosine deaminase [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662847|gb|EFX30179.1| tRNA-specific adenosine deaminase [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320667651|gb|EFX34566.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323955795|gb|EGB51553.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Escherichia coli H263]
 gi|323968007|gb|EGB63419.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Escherichia coli M863]
 gi|326340365|gb|EGD64169.1| tRNA-specific adenosine-34 deaminase [Escherichia coli O157:H7 str.
           1125]
 gi|332088011|gb|EGI93136.1| tRNA-specific adenosine deaminase [Shigella boydii 5216-82]
 gi|332089781|gb|EGI94882.1| tRNA-specific adenosine deaminase [Shigella dysenteriae 155-74]
          Length = 167

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 60/167 (35%), Gaps = 21/167 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  A+  ++           V  ++V +  VIG G     G      HAE+ AL + 
Sbjct: 9   EYWMRHAMTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQG 66

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +      AT YVTLEPC        CA  +I   I RVV    D     +G  +  
Sbjct: 67  GLVMQNYRLIDATLYVTLEPC------VMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDV 120

Query: 119 LSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           L   G    + +   + ++    L +   R   +      K   S D
Sbjct: 121 LHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD 167


>gi|119476440|ref|ZP_01616791.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [marine
           gamma proteobacterium HTCC2143]
 gi|119450304|gb|EAW31539.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [marine
           gamma proteobacterium HTCC2143]
          Length = 159

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 21/148 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
           +  D  +M AA++ ++    L      V  ++V +  VIG G            HAE+ A
Sbjct: 3   TDTDHHYMEAAIKLAQKAGAL--GEVPVGAVVVLNDKVIGEGFNQPISLSDPTAHAEMVA 60

Query: 60  LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           +++A +  +      AT YVT+EPC        CA  ++   ++RVV    +    V+  
Sbjct: 61  IKDAAKALQNYRLPEATLYVTIEPC------TMCAGAMVHARVKRVVYGATESKSGVAES 114

Query: 115 GLQWLS----QKGIIVDRMMESEGKIFL 138
                        + V   + +E    L
Sbjct: 115 NGCLFDNTYLNHKVEVVGGIMAERCSNL 142


>gi|15923548|ref|NP_371082.1| cytosine deaminase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926236|ref|NP_373769.1| hypothetical protein SA0516 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21282242|ref|NP_645330.1| hypothetical protein MW0513 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49485423|ref|YP_042644.1| putative deaminase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|87160687|ref|YP_493246.1| putative deaminase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194321|ref|YP_499113.1| hypothetical protein SAOUHSC_00541 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148267018|ref|YP_001245961.1| CMP/dCMP deaminase, zinc-binding [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393065|ref|YP_001315740.1| CMP/dCMP deaminase zinc-binding [Staphylococcus aureus subsp.
           aureus JH1]
 gi|151220732|ref|YP_001331554.1| hypothetical protein NWMN_0520 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156978887|ref|YP_001441146.1| hypothetical protein SAHV_0556 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161508798|ref|YP_001574457.1| deaminase [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221141004|ref|ZP_03565497.1| deaminase [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|253315668|ref|ZP_04838881.1| putative deaminase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253732567|ref|ZP_04866732.1| deaminase [Staphylococcus aureus subsp. aureus TCH130]
 gi|255005352|ref|ZP_05143953.2| putative deaminase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257795343|ref|ZP_05644322.1| deaminase [Staphylococcus aureus A9781]
 gi|258408970|ref|ZP_05681251.1| deaminase [Staphylococcus aureus A9763]
 gi|258420392|ref|ZP_05683335.1| tRNA-adenosine deaminase [Staphylococcus aureus A9719]
 gi|258422595|ref|ZP_05685501.1| CMP/dCMP deaminase, zinc-binding [Staphylococcus aureus A9635]
 gi|258439312|ref|ZP_05690244.1| cytosine deaminase [Staphylococcus aureus A9299]
 gi|258444052|ref|ZP_05692389.1| tRNA-adenosine deaminase [Staphylococcus aureus A8115]
 gi|258446321|ref|ZP_05694479.1| CMP/dCMP deaminase zinc-binding [Staphylococcus aureus A6300]
 gi|258448414|ref|ZP_05696529.1| deaminase [Staphylococcus aureus A6224]
 gi|258452708|ref|ZP_05700706.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|258453770|ref|ZP_05701744.1| cytosine deaminase [Staphylococcus aureus A5937]
 gi|262049601|ref|ZP_06022470.1| hypothetical protein SAD30_0395 [Staphylococcus aureus D30]
 gi|262052438|ref|ZP_06024638.1| hypothetical protein SA930_0274 [Staphylococcus aureus 930918-3]
 gi|269202181|ref|YP_003281450.1| putative tRNA-specific adenosine deaminase [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282894994|ref|ZP_06303217.1| tRNA-adenosine deaminase [Staphylococcus aureus A8117]
 gi|282924473|ref|ZP_06332145.1| tRNA-adenosine deaminase [Staphylococcus aureus A9765]
 gi|282928896|ref|ZP_06336487.1| tRNA-adenosine deaminase [Staphylococcus aureus A10102]
 gi|294850335|ref|ZP_06791069.1| tRNA-adenosine deaminase [Staphylococcus aureus A9754]
 gi|295406935|ref|ZP_06816738.1| tRNA-adenosine deaminase [Staphylococcus aureus A8819]
 gi|297208728|ref|ZP_06925156.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297246241|ref|ZP_06930090.1| tRNA-adenosine deaminase [Staphylococcus aureus A8796]
 gi|300912818|ref|ZP_07130260.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304381843|ref|ZP_07364490.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|13700450|dbj|BAB41747.1| SA0516 [Staphylococcus aureus subsp. aureus N315]
 gi|14246326|dbj|BAB56720.1| similar to cytosine deaminase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21203678|dbj|BAB94378.1| MW0513 [Staphylococcus aureus subsp. aureus MW2]
 gi|49243866|emb|CAG42291.1| putative deaminase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|87126661|gb|ABD21175.1| putative deaminase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87201879|gb|ABD29689.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740087|gb|ABQ48385.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus JH9]
 gi|149945517|gb|ABR51453.1| CMP/dCMP deaminase zinc-binding [Staphylococcus aureus subsp.
           aureus JH1]
 gi|150373532|dbj|BAF66792.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156721022|dbj|BAF77439.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160367607|gb|ABX28578.1| deaminase [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|253729496|gb|EES98225.1| deaminase [Staphylococcus aureus subsp. aureus TCH130]
 gi|257789315|gb|EEV27655.1| deaminase [Staphylococcus aureus A9781]
 gi|257840321|gb|EEV64784.1| deaminase [Staphylococcus aureus A9763]
 gi|257843582|gb|EEV67988.1| tRNA-adenosine deaminase [Staphylococcus aureus A9719]
 gi|257847167|gb|EEV71175.1| CMP/dCMP deaminase, zinc-binding [Staphylococcus aureus A9635]
 gi|257847649|gb|EEV71648.1| cytosine deaminase [Staphylococcus aureus A9299]
 gi|257850722|gb|EEV74667.1| tRNA-adenosine deaminase [Staphylococcus aureus A8115]
 gi|257854915|gb|EEV77860.1| CMP/dCMP deaminase zinc-binding [Staphylococcus aureus A6300]
 gi|257858283|gb|EEV81170.1| deaminase [Staphylococcus aureus A6224]
 gi|257859581|gb|EEV82431.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|257864026|gb|EEV86780.1| cytosine deaminase [Staphylococcus aureus A5937]
 gi|259159684|gb|EEW44728.1| hypothetical protein SA930_0274 [Staphylococcus aureus 930918-3]
 gi|259162341|gb|EEW46914.1| hypothetical protein SAD30_0395 [Staphylococcus aureus D30]
 gi|262074471|gb|ACY10444.1| putative tRNA-specific adenosine deaminase [Staphylococcus aureus
           subsp. aureus ED98]
 gi|269940131|emb|CBI48507.1| putative deaminase [Staphylococcus aureus subsp. aureus TW20]
 gi|282589504|gb|EFB94593.1| tRNA-adenosine deaminase [Staphylococcus aureus A10102]
 gi|282592884|gb|EFB97888.1| tRNA-adenosine deaminase [Staphylococcus aureus A9765]
 gi|282762676|gb|EFC02813.1| tRNA-adenosine deaminase [Staphylococcus aureus A8117]
 gi|285816259|gb|ADC36746.1| tRNA-specific adenosine-34 deaminase [Staphylococcus aureus
           04-02981]
 gi|294822847|gb|EFG39282.1| tRNA-adenosine deaminase [Staphylococcus aureus A9754]
 gi|294968166|gb|EFG44192.1| tRNA-adenosine deaminase [Staphylococcus aureus A8819]
 gi|296886673|gb|EFH25578.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297176839|gb|EFH36097.1| tRNA-adenosine deaminase [Staphylococcus aureus A8796]
 gi|300885922|gb|EFK81125.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|302332271|gb|ADL22464.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
           aureus JKD6159]
 gi|302750450|gb|ADL64627.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304339629|gb|EFM05576.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|312829054|emb|CBX33896.1| cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128851|gb|EFT84850.1| deaminase [Staphylococcus aureus subsp. aureus CGS03]
 gi|315196629|gb|EFU26976.1| deaminase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320141577|gb|EFW33416.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320141794|gb|EFW33622.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Staphylococcus aureus subsp. aureus MRSA177]
 gi|323439830|gb|EGA97547.1| putative deaminase [Staphylococcus aureus O11]
 gi|323443069|gb|EGB00689.1| putative deaminase [Staphylococcus aureus O46]
 gi|329313279|gb|AEB87692.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329727928|gb|EGG64377.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329731027|gb|EGG67400.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Staphylococcus aureus subsp. aureus 21189]
 gi|329731987|gb|EGG68343.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 156

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 58/150 (38%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  FM+ A+  ++    L      +  +I KD  VI R      T      HAE  A+E 
Sbjct: 4   DIYFMTLAIEEAKKAAQL--GEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIER 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +        G T YVTLEPC        CA  I+   I RVV   DDP    SG  + 
Sbjct: 62  AAKVLGSWRLEGCTLYVTLEPC------VMCAGTIVMSRIPRVVYGADDPKGGCSGSLMN 115

Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYL 142
            L       + I+   +++      L  + 
Sbjct: 116 LLQQSNFNHRAIVDKGVLKEACSTLLTTFF 145


>gi|218701072|ref|YP_002408701.1| tRNA-specific adenosine deaminase [Escherichia coli IAI39]
 gi|218371058|emb|CAR18885.1| tRNA-specific adenosine deaminase [Escherichia coli IAI39]
          Length = 178

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 60/167 (35%), Gaps = 21/167 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  A+  ++           V  ++V +  VIG G     G      HAE+ AL + 
Sbjct: 20  EYWMRHAMTLAKRAWDERE--VPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQG 77

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +      AT YVTLEPC        CA  +I   I RVV    D     +G  +  
Sbjct: 78  GLVMQNYRLIDATLYVTLEPC------VMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDV 131

Query: 119 LSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           L   G    + +   + ++    L +   R   +      K   S D
Sbjct: 132 LHHPGMNHRVEIIEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD 178


>gi|46143725|ref|ZP_00134574.2| COG0590: Cytosine/adenosine deaminases [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208056|ref|YP_001053281.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           L20]
 gi|126096848|gb|ABN73676.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 189

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 50/131 (38%), Gaps = 18/131 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHA 55
           + +S  D  FM  AL  +     +      V  ++V  +G +IG G            HA
Sbjct: 27  LTISEQDIHFMRYALELADRAEAI--GEIPVGAVLVDQEGNIIGEGWNQVIQLSDPSAHA 84

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+ +AG+  R       T YVTLEPC        CA  I+   +RR+V    D    
Sbjct: 85  EMLAIRQAGKVQRNYRLLDCTLYVTLEPC------TMCAGAILHSRLRRLVFGASDYKTG 138

Query: 111 VSGRGLQWLSQ 121
             G        
Sbjct: 139 AIGSRFHLFED 149


>gi|294496892|ref|YP_003560592.1| tRNA-specific adenosine deaminase [Bacillus megaterium QM B1551]
 gi|294346829|gb|ADE67158.1| tRNA-specific adenosine deaminase [Bacillus megaterium QM B1551]
          Length = 156

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 61/150 (40%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D ++M  A+  +            +  +IV++  V+        T      HAE+ A++E
Sbjct: 4   DEKYMRLAIDEALKAK--DKLEVPIGAVIVQNDEVVASAYNLRETEQRSVAHAELLAIDE 61

Query: 63  AGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  L 
Sbjct: 62  ACKKLGTWRLEDATLYVTLEPC------PMCAGAIVLSRVKRVVFGAYDPKGGCAGTLLN 115

Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYL 142
            L       +  +V  M+E E    L  + 
Sbjct: 116 LLEFEKFNHQAQVVGGMLEEECGSLLTTFF 145


>gi|329902676|ref|ZP_08273230.1| tRNA-specific adenosine-34 deaminase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548648|gb|EGF33298.1| tRNA-specific adenosine-34 deaminase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 161

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 63/164 (38%), Gaps = 25/164 (15%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALE 61
            D+ FM  A+  +     L      V  ++VKDG VI  G     G      HAE+ AL 
Sbjct: 2   DDSVFMRLAMDQAHNAWAL--GEVPVGAVLVKDGQVIATGFNQSIGTHDPTAHAEIMALR 59

Query: 62  EAGE------EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            AG          G   YVTLEPC+       CA  ++   + RVV    DP     G  
Sbjct: 60  -AGASLLGNYRLPGCELYVTLEPCAM------CAGAMMHARLARVVYGASDPKTGCCGSV 112

Query: 116 LQWLSQK------GIIVDRMMESEGKIFLHAYLTRQVEKRSHIT 153
           L    Q       G++   + ++   +    +  R++ ++   T
Sbjct: 113 LDLFGQAQLNHHTGLVGGVLADACSALLKDFFAERRLAQKPPST 156


>gi|313631569|gb|EFR98838.1| tRNA-specific adenosine deaminase [Listeria seeligeri FSL N1-067]
          Length = 156

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 22/150 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
           A FM  AL  +     +      +  ++V DG +IGR      T+     HAE+ A+++A
Sbjct: 4   AFFMQQALVEAEKAREI--GEVPIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDA 61

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                     GA  YVTLEPC      P C+  I+   I +V     DP    +G  +  
Sbjct: 62  CNHQKSWRLSGAELYVTLEPC------PMCSGAILLSRIDKVYYGAKDPKAGTAGSLMNL 115

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLT 143
           L          +   +ME+E    L ++  
Sbjct: 116 LQDDRFNHTCEVESGLMEAESSEMLKSFFQ 145


>gi|145640612|ref|ZP_01796195.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae R3021]
 gi|145274538|gb|EDK14401.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
           22.4-21]
          Length = 85

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYL 334
           +  L  R + +L VE GA +A S I+++LVD +I+Y +  ++G+          L +   
Sbjct: 1   MRELGKRQINTLWVEAGANLAGSLIDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLAD 60

Query: 335 EKNFMCVRRDYFGSDVCLEYIGK 357
              +     +  G D+ L Y  K
Sbjct: 61  APLWQLNELEQIGDDIKLTYTPK 83


>gi|226946009|ref|YP_002801082.1| Cytidine/deoxycytidylate deaminase-like protein [Azotobacter
           vinelandii DJ]
 gi|226720936|gb|ACO80107.1| Cytidine/deoxycytidylate deaminase-like protein [Azotobacter
           vinelandii DJ]
          Length = 158

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 62/152 (40%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
           S D  FM  AL  +    GL      V  ++V+ G ++GRG            HAE+ A+
Sbjct: 10  SQDEHFMREALVLAAEGAGL--GEVPVGAVLVRGGEIVGRGFNCPISRRDPSAHAEMVAI 67

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A          G+T YVTLEPCS       CA  I+   + RVV    +P   V+   
Sbjct: 68  RAAAAALDNYRLPGSTLYVTLEPCSM------CAGLIVHARVARVVFGASEPRAGVAVSR 121

Query: 116 L-----QWLSQKGIIVDRMMESEGKIFLHAYL 142
                  +L+ + +I   ++  E    L A+ 
Sbjct: 122 GDFFAQDFLNHRVLIEGGLLAEECGAILKAFF 153


>gi|88192205|pdb|2B3J|A Chain A, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
           Deaminase, Tada, In Complex With Rna
 gi|88192206|pdb|2B3J|B Chain B, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
           Deaminase, Tada, In Complex With Rna
 gi|88192207|pdb|2B3J|C Chain C, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
           Deaminase, Tada, In Complex With Rna
 gi|88192208|pdb|2B3J|D Chain D, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
           Deaminase, Tada, In Complex With Rna
          Length = 159

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 58/150 (38%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  FM+ A+  ++    L      +  +I KD  VI R      T      HAE  A+E 
Sbjct: 7   DIYFMTLAIEEAKKAAQL--GEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIER 64

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +        G T YVTLEPC        CA  I+   I RVV   DDP    SG  + 
Sbjct: 65  AAKVLGSWRLEGCTLYVTLEPC------VMCAGTIVMSRIPRVVYGADDPKGGCSGSLMN 118

Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYL 142
            L       + I+   +++      L  + 
Sbjct: 119 LLQQSNFNHRAIVDKGVLKEACSTLLTTFF 148


>gi|253996102|ref|YP_003048166.1| CMP/dCMP deaminase zinc-binding [Methylotenera mobilis JLW8]
 gi|253982781|gb|ACT47639.1| CMP/dCMP deaminase zinc-binding [Methylotenera mobilis JLW8]
          Length = 165

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 22/153 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59
           +  D  FM+ AL  ++    L    P V  ++VKDG++IGRG    +T +    HAE+QA
Sbjct: 9   TEQDQAFMNIALTLAKQAA-LAGEVP-VGAIVVKDGVIIGRGSNAPITLHDPSAHAEIQA 66

Query: 60  LEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           + +A +          T YVTLEPC+       CA  I    I ++V    D      G 
Sbjct: 67  MRDAAQHLGNYRLVDCTLYVTLEPCAM------CAGAIQHARIAKLVYGASDQKTGACGS 120

Query: 115 GLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
            +       L+    +   ++  E  + L ++ 
Sbjct: 121 VVNLMAEQKLNHHTTVASGLLADECGMMLSSFF 153


>gi|300717977|ref|YP_003742780.1| tRNA-specific adenosine deaminase [Erwinia billingiae Eb661]
 gi|299063813|emb|CAX60933.1| tRNA-specific adenosine deaminase [Erwinia billingiae Eb661]
          Length = 171

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 56/158 (35%), Gaps = 22/158 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
           M     D  +M  AL  +R           V  ++V+    IG G     G      HAE
Sbjct: 1   MSDKVSDEFWMRHALMLARRAW--EEGEVPVGAVLVQGDKAIGEGWNRPIGHHDPTAHAE 58

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL + G+          T YVTLEPC        CA  ++   I R+V    D     
Sbjct: 59  IMALRQGGKVLENYRLLDTTLYVTLEPC------VMCAGAMVHGRIGRLVFGARDEKTGA 112

Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTR 144
           +G  +  L   G+     + + M+  E    L  +   
Sbjct: 113 AGSLIDVLGHAGMNHQVKVEEGMLAEECAGMLSDFFRH 150


>gi|197119924|ref|YP_002140351.1| tRNA (adenosine-34) deaminase [Geobacter bemidjiensis Bem]
 gi|197089284|gb|ACH40555.1| tRNA (adenosine-34) deaminase [Geobacter bemidjiensis Bem]
          Length = 166

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 22/154 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           +   D  +M  A+  +R    +      +  +IVKDG++I RG            HAE+ 
Sbjct: 1   MQRDDHYWMGKAIAQARRAEAI--GEVPIGAVIVKDGVIIARGHNLRESNQDPAAHAEMI 58

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+ +A ++       GAT YVTLEPC        C   +I   + RVV    DP    +G
Sbjct: 59  AIRKAAKKLASWRLTGATLYVTLEPC------TMCMGAVILSRLDRVVFGSYDPKGGAAG 112

Query: 114 RGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
                     L+   ++   +   E    L  + 
Sbjct: 113 SLYDLSDDKRLNHSVVLTPGVRGEETSSMLSGFF 146


>gi|169633380|ref|YP_001707116.1| putative deaminase [Acinetobacter baumannii SDF]
 gi|169152172|emb|CAP01075.1| putative deaminase [Acinetobacter baumannii]
          Length = 166

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 45/125 (36%), Gaps = 18/125 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M  A   +            V  +IV    +IG G  A  G      HAE+QA+  
Sbjct: 6   DEYWMQLAYEQAELAA--EQGEIPVGAVIVSQNKLIGAGFNAPIGLSDPTAHAEIQAIRA 63

Query: 63  AGEEAR------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           A E  +       AT YVTLEPC        C   ++   I+ VV    +P         
Sbjct: 64  ACESLKNYRLPEDATLYVTLEPC------TMCVGALVHARIKHVVFGTTEPKAGSLVSAR 117

Query: 117 QWLSQ 121
           Q L  
Sbjct: 118 QLLEN 122


>gi|167752821|ref|ZP_02424948.1| hypothetical protein ALIPUT_01082 [Alistipes putredinis DSM 17216]
 gi|167659890|gb|EDS04020.1| hypothetical protein ALIPUT_01082 [Alistipes putredinis DSM 17216]
          Length = 148

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 59/151 (39%), Gaps = 17/151 (11%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M     D +FM  AL  +     L      +  ++V DG ++GRG     T      HAE
Sbjct: 1   MEQQQPDEKFMRLALNEAEKA--LEEQEVPIGAVVVADGRIVGRGHNLVETLADATAHAE 58

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +QAL  A     G+     T YVT+EPC        CA  I    + RVV   DDP    
Sbjct: 59  MQALTAAASTVGGKYLSECTLYVTVEPCIM------CAGAIAWSQVGRVVYGADDPKRGY 112

Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
                Q    +  +   ++  E +  + ++ 
Sbjct: 113 RRYSEQVFPPRTTVTRGVLAEECERLVRSFF 143


>gi|148653387|ref|YP_001280480.1| CMP/dCMP deaminase, zinc-binding [Psychrobacter sp. PRwf-1]
 gi|148572471|gb|ABQ94530.1| CMP/dCMP deaminase, zinc-binding [Psychrobacter sp. PRwf-1]
          Length = 190

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 54/148 (36%), Gaps = 31/148 (20%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           D  FM  AL  ++   G +     V  ++V D  +IG G            HAEV AL  
Sbjct: 34  DVGFMRRALALAQ--QGASQEEVPVGAVLVCDNKIIGEGFNQPITTSDPTAHAEVVALRC 91

Query: 63  AGEEAR------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           A +  +        T YVTLEPC        C   +I   + R+V    +P         
Sbjct: 92  ACQTLQNYRLPPNTTLYVTLEPC------TMCLGALIHARLARLVFATFEP--------- 136

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTR 144
               + G++  ++  +E   + H     
Sbjct: 137 ----RAGMVGSQLNLTEMDFYNHKMQAY 160


>gi|311898175|dbj|BAJ30583.1| putative diaminohydroxyphosphoribosylamino- pyrimidine deaminase
           [Kitasatospora setae KM-6054]
          Length = 153

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 47/134 (35%), Positives = 67/134 (50%), Gaps = 8/134 (5%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT-AYGGCPHAEVQALEE 62
           + D R+M  A+  S+     + T  SV  +IV  DG V+  G +       HAE  AL +
Sbjct: 7   AADLRWMRRAIELSKR-CPPSRTAFSVGAVIVGADGEVLAEGHSREVDAVNHAEEAALGK 65

Query: 63  --AGE-EARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRV-SGRGLQ 117
             AG+   R AT Y TLEPC      P PCA+ I+  G+ RVVV   +P + V + +G  
Sbjct: 66  LPAGDPRLRAATVYSTLEPCGQRASRPHPCAELIVAAGVPRVVVAWREPSLFVAACQGTA 125

Query: 118 WLSQKGIIVDRMME 131
            L+  G+ V  + E
Sbjct: 126 LLTAAGVEVIELPE 139


>gi|289435993|ref|YP_003465865.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289172237|emb|CBH28783.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 156

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 22/150 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
           A FM  AL  +     +      +  ++V DG +IGR      T+     HAE+ A+++A
Sbjct: 4   AFFMQQALVEAEKAREI--GEVPIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDA 61

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                     GA  YVTLEPC      P C+  I+   I +V     DP    +G  +  
Sbjct: 62  CNHQKSWRLSGAELYVTLEPC------PMCSGAILLSRIDKVYYGAKDPKAGTAGSLMNL 115

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLT 143
           L          +   +ME+E    L ++  
Sbjct: 116 LQDDRFNHTCEVESGLMEAESSEMLKSFFQ 145


>gi|16801927|ref|NP_472195.1| hypothetical protein lin2867 [Listeria innocua Clip11262]
 gi|16415402|emb|CAC98093.1| lin2867 [Listeria innocua Clip11262]
          Length = 154

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
            FM  AL  ++    +      +  ++V DG +IGR      T      HAE+ A+E+A 
Sbjct: 5   FFMQQALEEAKKAREI--GEVPIGAVVVLDGEIIGRAHNLRETTQNAVTHAELLAIEDAC 62

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           +        GA  YVTLEPC      P C+  I+   I +V     DP    +G  +  L
Sbjct: 63  KHQNSWRLSGAELYVTLEPC------PMCSGAILLSRIDKVYYGAKDPKAGTAGSLMNLL 116

Query: 120 S-----QKGIIVDRMMESEGKIFLHAYL 142
                     +   ++E+E    L ++ 
Sbjct: 117 QDDRFNHTCKVEAGLLEAESSAMLKSFF 144


>gi|294140156|ref|YP_003556134.1| cytidine/deoxycytidylate deaminase family protein [Shewanella
           violacea DSS12]
 gi|293326625|dbj|BAJ01356.1| cytidine/deoxycytidylate deaminase family protein [Shewanella
           violacea DSS12]
          Length = 169

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 59/154 (38%), Gaps = 22/154 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
           + D  FMS A+  +     +      V  ++VK G VI  G     G      HAE+Q L
Sbjct: 2   ALDQHFMSMAMEMAHKAEAV--GEVPVGAVLVKHGQVISAGFNYCIGLHDPSAHAEMQCL 59

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +AG+          T YVTLEPC+       CA  ++   I R+V    D     +G  
Sbjct: 60  RQAGKVTENYRLLDTTLYVTLEPCAM------CAGAMVHSRIARLVFGAKDEKTGAAGTV 113

Query: 116 LQWLSQKGI-----IVDRMMESEGKIFLHAYLTR 144
           +  +          + D ++  E    L  +  R
Sbjct: 114 IDLVRHPDFNHQLQVSDGVLADECSEQLSQFFRR 147


>gi|289623948|ref|ZP_06456902.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
          Length = 113

 Score = 89.6 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/113 (37%), Positives = 61/113 (53%), Gaps = 1/113 (0%)

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQV 146
           CA  ++  G+ RVV  + DP+  VSGRGL  L   GI +   ++ESE +     +L R  
Sbjct: 1   CADALVNAGLARVVAAMQDPNPDVSGRGLLRLMNAGIGVQCGVLESEARALNKGFLKRME 60

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199
             + +I +K+A+S D    MA   S  ITG  +++ V  LRAQS  +L G  T
Sbjct: 61  TGQPYIRVKMAMSLDGRTAMASGESQWITGPEARSAVQRLRAQSSVVLTGADT 113


>gi|289665842|ref|ZP_06487423.1| hypothetical protein XcampvN_22891 [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 174

 Score = 89.6 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 64/164 (39%), Gaps = 22/164 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHAE 56
           P S+ D  +M  AL  +          P V  L+V  +G V+G G      ++    HAE
Sbjct: 15  PHSAIDLHWMQHALHLAERAERDYDEIP-VGALVVDAEGNVLGEGWNFNIASHDPSAHAE 73

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ EAG         G T YVTLEPC+       CA  +I   I RVV    DP    
Sbjct: 74  IVAMREAGRRLANHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGA 127

Query: 112 SGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
            G     L+         +   ++ +E  + L  Y   +  K  
Sbjct: 128 CGSVFDLLADPRHNHHVRVSGGVLAAEASLRLTNYFRAKRGKPP 171


>gi|229823590|ref|ZP_04449659.1| hypothetical protein GCWU000282_00889 [Catonella morbi ATCC 51271]
 gi|229787034|gb|EEP23148.1| hypothetical protein GCWU000282_00889 [Catonella morbi ATCC 51271]
          Length = 178

 Score = 89.6 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 59/153 (38%), Gaps = 22/153 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
           +    +M  AL  +     L      +  L+VKDG+++               HAE+ A+
Sbjct: 13  AQHEYWMQQALELADQAQAL--GEVPIGALLVKDGVLLASAYNLREVNHQATAHAELLAI 70

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           E A +        G T YVTLEPC      P CA  ++   + +VV    DP    +G  
Sbjct: 71  EAANQALGAWRLEGCTLYVTLEPC------PMCAGALVLSRVDQVVYGASDPKGGCAGSL 124

Query: 116 LQWLSQKGI-----IVDRMMESEGKIFLHAYLT 143
           +  L          ++  ++E++    L  +  
Sbjct: 125 MNLLEDSRFNHQPQVIRGVLEAQCSDKLKNFFQ 157


>gi|295694717|ref|YP_003587955.1| CMP/dCMP deaminase zinc-binding protein [Bacillus tusciae DSM 2912]
 gi|295410319|gb|ADG04811.1| CMP/dCMP deaminase zinc-binding protein [Bacillus tusciae DSM 2912]
          Length = 174

 Score = 89.6 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 22/176 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           MP +  D ++M  AL+ + +  G     P +  ++V  G ++G G            HAE
Sbjct: 1   MPDAPRDLQYMERALQLAAYA-GEMGEVP-IGAVVVAGGKILGEGCNLREMWNDPTAHAE 58

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL +A     G    G T YVTLEPC+       C    +   + RVV    DP    
Sbjct: 59  MVALRQAAQAVGGWRLSGTTLYVTLEPCAM------CVGAAVLARVERVVFGAPDPKAGA 112

Query: 112 SGRGLQW----LSQK-GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            G  LQ     L+ +  +    + +S   +    +   ++ KR        +S D+
Sbjct: 113 CGSVLQVADAPLNHRLKVEGGVLQQSCSHLLKQFFRELRMRKRPQAGRSSVLSFDD 168


>gi|254672230|emb|CBA05187.1| putative hydrolase protein [Neisseria meningitidis alpha275]
          Length = 197

 Score = 89.6 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 60/156 (38%), Gaps = 22/156 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P       FM  ALR +            V  +IV DG +I               HAE+
Sbjct: 45  PPQEEMEHFMREALRQAEQSA--ADGEIPVGAVIVSDGKIIASAHNTCIADCNVSRHAEI 102

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+    +P    +
Sbjct: 103 NALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGAAEPKTGAA 156

Query: 113 GRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLT 143
           G  +       L+    I   +++ E +  L  +  
Sbjct: 157 GSIVNLFADKRLNTHTAIRGGILQEECRAVLSRFFQ 192


>gi|91776192|ref|YP_545948.1| tRNA-adenosine deaminase [Methylobacillus flagellatus KT]
 gi|91710179|gb|ABE50107.1| tRNA-adenosine deaminase [Methylobacillus flagellatus KT]
          Length = 168

 Score = 89.6 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 65/163 (39%), Gaps = 31/163 (19%)

Query: 1   MPVS-----SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG------VTAY 49
           MP S     + D  FM  AL+ ++    L    P V  ++VKDG+VIGRG          
Sbjct: 1   MPASQEENTAADEDFMRIALQLAQEAA-LAGEVP-VGAVVVKDGVVIGRGSNAPIAYHDP 58

Query: 50  GGCPHAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
               HAE++A+ +A          G   YVTLEPC+       CA  I    I R+V   
Sbjct: 59  --SAHAEIRAMRDAAARLGNYRLTGCALYVTLEPCAM------CAGAIQHARIARLVFGA 110

Query: 105 DDPDVRVSGRGL-----QWLSQKGIIVDRMMESEGKIFLHAYL 142
            D      G  +     + L+   ++   ++  E    L  + 
Sbjct: 111 HDYKTGACGSVIDLMAEERLNHHTLVKSGVLVQECSATLTQFF 153


>gi|72161720|ref|YP_289377.1| hypothetical protein Tfu_1316 [Thermobifida fusca YX]
 gi|71915452|gb|AAZ55354.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermobifida
           fusca YX]
          Length = 257

 Score = 89.6 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 73/206 (35%), Gaps = 13/206 (6%)

Query: 132 SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191
                 L+AY    V +R  +      + D  +      S  I     +    L+RA SD
Sbjct: 21  EAELAALYAYPEETVAERPWVRANFVTTLDGAVTGDDGRSGSINTGADRILFSLIRALSD 80

Query: 192 AILVGIGTVLAD-------DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            I+ G GTV  +                  Q   P+  ++     L     +        
Sbjct: 81  VIVAGAGTVRTEEYQRARTAARWRAVRRAGQRPHPVIAVVSRSANLPPSL-LEHQEDAGE 139

Query: 245 VIIVTENDDPVLAL-----AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           V+++T       AL     A     + ++  D  DL+  L  L  +G+  +L EGG  + 
Sbjct: 140 VMLLTCRAADSAALDEVRQALGDDRVLVLGEDRVDLRAALDALAQQGLRRVLCEGGPHLM 199

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGI 325
           H  +++ LVD + L  +  ++    +
Sbjct: 200 HDLVDADLVDELCLTLAPRIVAGDRL 225


>gi|28209851|ref|NP_780795.1| cytosine deaminase [Clostridium tetani E88]
 gi|28202286|gb|AAO34732.1| cytosine deaminase [Clostridium tetani E88]
          Length = 146

 Score = 89.6 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 21/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
             FM  A+  +R  + +      +  +IVK+  +IGRG      +     HAE+ A+ EA
Sbjct: 3   EYFMKEAVLEARKALNINEV--PIGAVIVKENKIIGRGHNLVEKSKNPLAHAEIIAIREA 60

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                     G   YVTLEPC      P CA  II   + +V +   DP+    G  +  
Sbjct: 61  CKSINNWRLNGCHMYVTLEPC------PMCAGAIIRSRMDKVYIGTFDPNSGACGTIINL 114

Query: 119 LSQK----GIIVDRMMESEGKIFLHAYLT 143
              K     I ++ + + E    L  +  
Sbjct: 115 TQNKYLNTNININWLYDEESSTLLKKFFY 143


>gi|292489080|ref|YP_003531967.1| tRNA-specific adenosine deaminase [Erwinia amylovora CFBP1430]
 gi|291554514|emb|CBA22074.1| tRNA-specific adenosine deaminase [Erwinia amylovora CFBP1430]
          Length = 159

 Score = 89.6 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 55/150 (36%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M  ALR +R           V  ++V D  VIG G     G      HAE+ AL +
Sbjct: 6   DEYWMRHALRLARRAW--DEGEVPVGAVLVLDNQVIGEGWNRPIGHHDPTAHAEMMALRQ 63

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            G+          T YVTLEPC        CA  +I   I R+V    D     +G  L 
Sbjct: 64  GGKMIENYRLLDTTLYVTLEPC------VMCAGAMIHSRIGRLVYGARDAKTGAAGSLLD 117

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYL 142
            L   G+         ++  E    L  + 
Sbjct: 118 VLGHPGMNHQVPAECGLLNDECAAMLSDFF 147


>gi|254804815|ref|YP_003083036.1| probable cytidine deaminase [Neisseria meningitidis alpha14]
 gi|304387765|ref|ZP_07369945.1| tRNA-specific adenosine deaminase [Neisseria meningitidis ATCC
           13091]
 gi|254668357|emb|CBA05413.1| probable cytidine deaminase [Neisseria meningitidis alpha14]
 gi|254671348|emb|CBA08775.1| putative hydrolase protein [Neisseria meningitidis alpha153]
 gi|304338241|gb|EFM04371.1| tRNA-specific adenosine deaminase [Neisseria meningitidis ATCC
           13091]
 gi|319410268|emb|CBY90609.1| K01485 cytosine deaminase [Neisseria meningitidis WUE 2594]
          Length = 239

 Score = 89.6 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 60/156 (38%), Gaps = 22/156 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P       FM  ALR +            V  +IV DG +I               HAE+
Sbjct: 87  PPQEEMEHFMREALRQAEQSA--ADGEIPVGAVIVSDGKIIASAHNTCIADCNVSRHAEI 144

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+    +P    +
Sbjct: 145 NALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGAAEPKTGAA 198

Query: 113 GRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLT 143
           G  +       L+    I   +++ E +  L  +  
Sbjct: 199 GSIVNLFADKRLNTHTAIRGGILQEECRAVLSRFFQ 234


>gi|260221448|emb|CBA30021.1| hypothetical protein Csp_A15070 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 408

 Score = 89.6 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 66/173 (38%), Gaps = 22/173 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           M +   D  FMS AL  +     L    P V  +IVK G VI +G            HAE
Sbjct: 1   MLLIQSDEYFMSLALEQAIEAE-LAGEVP-VGAVIVKGGQVIAKGRNRTIEWNDPSAHAE 58

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           V AL+EA          G   +VTLEPC+       C+  I    I RVV    DP    
Sbjct: 59  VVALKEAARACGTHRLSGLQLFVTLEPCAM------CSGAIFHGRIERVVFGAADPKTGC 112

Query: 112 SGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
           +G  L       L+    +   ++  E    L  +  R   +++  ++ +   
Sbjct: 113 AGSVLNLFAVDKLNHHAEVSGGVLSHECSDILVRFFERSRARKNASSIPLRED 165


>gi|125555393|gb|EAZ00999.1| hypothetical protein OsI_23033 [Oryza sativa Indica Group]
          Length = 1593

 Score = 89.6 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 67/182 (36%), Gaps = 19/182 (10%)

Query: 7    DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
            D  FM  AL  ++    L    P V  ++V++G +I RG            HAE+  + E
Sbjct: 1392 DELFMREALHEAQRAADL-WEVP-VGAVLVQNGEIIARGCNLVEDLRDSTAHAEIVCIRE 1449

Query: 63   AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            A  + +       T YVTLEPC+       CA  I++  +  VV    +  +   G  ++
Sbjct: 1450 ASNKLKTWRLADTTLYVTLEPCAM------CAGAILQARVDTVVWGAPNKLLGADGSWVR 1503

Query: 118  WLSQKGIIV--DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
                 G     D    ++G   +H +  +   +R  ++ + +        +         
Sbjct: 1504 LFPGDGQTSSLDSANTNQGAGPVHPFHPKISIRRGILSAECSEIMQQFFHLRRRKKQKPE 1563

Query: 176  GF 177
              
Sbjct: 1564 SP 1565


>gi|292900205|ref|YP_003539574.1| tRNA-specific adenosine deaminase [Erwinia amylovora ATCC 49946]
 gi|291200053|emb|CBJ47178.1| tRNA-specific adenosine deaminase [Erwinia amylovora ATCC 49946]
          Length = 164

 Score = 89.6 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 55/150 (36%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M  ALR +R           V  ++V D  VIG G     G      HAE+ AL +
Sbjct: 11  DEYWMRHALRLARRAW--DEGEVPVGAVLVLDNQVIGEGWNRPIGHHDPTAHAEMMALRQ 68

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            G+          T YVTLEPC        CA  +I   I R+V    D     +G  L 
Sbjct: 69  GGKMIENYRLLDTTLYVTLEPC------VMCAGAMIHSRIGRLVYGARDAKTGAAGSLLD 122

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYL 142
            L   G+         ++  E    L  + 
Sbjct: 123 VLGHPGMNHQVPAECGLLNDECAAMLSDFF 152


>gi|296314748|ref|ZP_06864689.1| tRNA-specific adenosine deaminase [Neisseria polysaccharea ATCC
           43768]
 gi|296838389|gb|EFH22327.1| tRNA-specific adenosine deaminase [Neisseria polysaccharea ATCC
           43768]
          Length = 239

 Score = 89.6 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 60/156 (38%), Gaps = 22/156 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P       FM  ALR +            V  +IV DG +I               HAE+
Sbjct: 87  PPQEEMEHFMREALRQAEQSA--ADGEIPVGAVIVSDGKIIASAHNTCIADCNVSCHAEI 144

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL +AG E +     G   Y+TLEPC+       CA  +I+  I+RV+    +P    +
Sbjct: 145 NALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIKRVIYGAAEPKTGAA 198

Query: 113 GRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLT 143
           G  +       L+    I   +++ E +  L  +  
Sbjct: 199 GSIVNLFADKRLNTHTAIRGGILQEECRAVLSRFFQ 234


>gi|317493152|ref|ZP_07951575.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918812|gb|EFV40148.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 170

 Score = 89.6 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 22/151 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           DA +M  AL  ++           V  ++V D  VIG+G     T +    HAE+ AL++
Sbjct: 6   DAYWMKQALALAQKAW--EQGEVPVGAILVLDDEVIGQGWNRPITRHDPTAHAEIMALQQ 63

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            G+         AT YVTLEPC        CA  ++   I+R+V    D     +G  L 
Sbjct: 64  GGQIVQNYRLLNATLYVTLEPC------VMCAGAMVHSRIKRLVYGASDLKTGAAGSLLD 117

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLT 143
            L   G+     I   +M +E    L  +  
Sbjct: 118 VLRHPGMNHQIEITAGVMANECSEMLSQFFQ 148


>gi|296113086|ref|YP_003627024.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis RH4]
 gi|295920780|gb|ADG61131.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis RH4]
          Length = 159

 Score = 89.6 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 53/144 (36%), Gaps = 31/144 (21%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D   M+ AL  ++           V  ++V +G ++G G     T      HAE+ A+  
Sbjct: 3   DVEMMNRALEIAKQGAKF--GEIPVGAVVVYEGRILGEGYNCPITTQDPTAHAEIVAVRR 60

Query: 63  AGE------EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           A E        +G   YVTLEPC        C   +I   I RVV    +P         
Sbjct: 61  ACETLNNYRLPKGCILYVTLEPC------TMCFGALIHARISRVVFGAFEPK-------- 106

Query: 117 QWLSQKGIIVDRMMESEGKIFLHA 140
                 G++V ++   E   + H 
Sbjct: 107 -----AGVVVSQLKLPEQVFYNHH 125


>gi|298693889|gb|ADI97111.1| cytosine deaminase [Staphylococcus aureus subsp. aureus ED133]
          Length = 156

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 58/150 (38%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  FM+ A+  ++    L      +  +I KD  VI R      T      HAE  A+E 
Sbjct: 4   DIYFMTLAIEEAKKAAQL--GEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIER 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +        G T YVTLEPC        CA  I+   I RVV   DDP    SG  + 
Sbjct: 62  AAKVLGSWRLEGCTLYVTLEPC------VMCAGTIVMSRIPRVVYGADDPKGGCSGSLMN 115

Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYL 142
            L       + I+   +++      L  + 
Sbjct: 116 LLQQSNFNHRAIVDKGVLKEACSTLLTTFF 145


>gi|111023823|ref|YP_706795.1| hypothetical protein RHA1_ro06865 [Rhodococcus jostii RHA1]
 gi|110823353|gb|ABG98637.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodococcus
           jostii RHA1]
          Length = 262

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 79/228 (34%), Gaps = 14/228 (6%)

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           Y       R  + +    S D  + +    S  +     +     LR  +D +LVG GTV
Sbjct: 33  YAYPAETPRPWVRVNFVSSIDGAVSV-DGVSGALGTPADRLVFETLRELADVVLVGAGTV 91

Query: 201 LADD--------PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252
             ++             R+       P   ++     L   S++     +AP+++   + 
Sbjct: 92  RVENYGGARIHAEGRRRRVASGMPEVPPIAVVSARAHLDPQSRLFTDTEVAPIVVTCTDA 151

Query: 253 DPVLALAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
           DP    A       I+      +    L+  L   G+  +L EGG ++        +VD 
Sbjct: 152 DPGRVRALADAGARIVTAGDGQISGDGLIAALEHLGLRRVLCEGGPSLFGRLTADDVVDE 211

Query: 311 IILYRSQIVIGE--GGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
           + L  + +++G   G + +      +      +  D  G+ V   ++ 
Sbjct: 212 VCLTTAPVLVGGTAGRVATAPGARIIAMTPAHILTDTDGT-VLTRWVR 258


>gi|303258084|ref|ZP_07344092.1| cytidine/deoxycytidylate deaminase family protein [Burkholderiales
           bacterium 1_1_47]
 gi|330998703|ref|ZP_08322432.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Parasutterella excrementihominis YIT 11859]
 gi|302859103|gb|EFL82186.1| cytidine/deoxycytidylate deaminase family protein [Burkholderiales
           bacterium 1_1_47]
 gi|329576442|gb|EGG57954.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Parasutterella excrementihominis YIT 11859]
          Length = 281

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 62/155 (40%), Gaps = 27/155 (17%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV------TAYGGCPHAEV 57
           S D  FM  AL  +       +    V  ++V K+G +IGRG           G  HAE+
Sbjct: 125 SRDEYFMREALVEAEKA--HQAGEVPVGAVVVDKEGKIIGRGHNLVVAGHDPSG--HAEI 180

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL+ A +  +       T YVTLEPC      P C+  II   + R+V    D     +
Sbjct: 181 IALKNASQNLKNYRLDNCTIYVTLEPC------PMCSGAIIGARLARLVYGAKDQKAGAA 234

Query: 113 GRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
               +   +K +     +   ++E +    L ++ 
Sbjct: 235 ESVFKLFDEKRVNHHTDVTAGVLEEDCLRILQSFF 269


>gi|283469850|emb|CAQ49061.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 156

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 57/150 (38%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  FM+ A+  ++    L      +  +I K   VI R      T      HAE  A+E 
Sbjct: 4   DIYFMTLAIEEAKKAARL--GEVPIGAVITKGDEVIARAHNLRETLQQPTAHAEHIAIER 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +        G T YVTLEPC        CA  I+   I RVV   DDP    SG  + 
Sbjct: 62  AAKVLGSWRLEGCTLYVTLEPC------VMCAGTIVMSRIPRVVYGADDPKGGCSGSLMN 115

Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYL 142
            L       + I+   +++      L  + 
Sbjct: 116 LLQQSNFNHRAIVDKGVLKEACSTLLTTFF 145


>gi|326571142|gb|EGE21166.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis BC7]
          Length = 159

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 53/144 (36%), Gaps = 31/144 (21%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D   M+ AL  ++           V  ++V +G ++G G     T      HAE+ A+  
Sbjct: 3   DVEMMNRALEIAKQGAKF--GEIPVGAVVVYEGRILGEGYNCPITTQDPTAHAEIVAVRR 60

Query: 63  AGE------EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           A E        +G   YVTLEPC        C   +I   I RVV    +P         
Sbjct: 61  ACETLNNYRLPKGCILYVTLEPC------TMCFGALIHARISRVVFGAFEPK-------- 106

Query: 117 QWLSQKGIIVDRMMESEGKIFLHA 140
                 G++V ++   E   + H 
Sbjct: 107 -----AGVVVSQLKLPEQVFYNHH 125


>gi|228478058|ref|ZP_04062669.1| tRNA-specific adenosine deaminase [Streptococcus salivarius SK126]
 gi|228250238|gb|EEK09491.1| tRNA-specific adenosine deaminase [Streptococcus salivarius SK126]
          Length = 172

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 58/148 (39%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
            FMS AL+ +   +        + C+IVKDG V+GRG  A         HAEV A++EA 
Sbjct: 11  FFMSEALKEAEKSLDKAE--IPIGCVIVKDGEVVGRGHNAREELNQAIMHAEVMAIQEAN 68

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                      T +VT+EPC        C+  I    I +V+    +     +G     L
Sbjct: 69  RTVGNWRLLDCTLFVTIEPC------VMCSGAIGLARIPKVIYGASNQKFGGAGSLYDIL 122

Query: 120 S-----QKGIIVDRMMESEGKIFLHAYL 142
                  +  +   +ME E    +  + 
Sbjct: 123 RDERLNHRVEVETGVMEEECAKIMQDFF 150


>gi|146319707|ref|YP_001199419.1| cytosine/adenosine deaminase [Streptococcus suis 05ZYH33]
 gi|253752698|ref|YP_003025839.1| deaminase [Streptococcus suis SC84]
 gi|253754524|ref|YP_003027665.1| deaminase [Streptococcus suis P1/7]
 gi|253756457|ref|YP_003029597.1| deaminase [Streptococcus suis BM407]
 gi|145690513|gb|ABP91019.1| Cytosine/adenosine deaminase [Streptococcus suis 05ZYH33]
 gi|251816987|emb|CAZ52636.1| putative deaminase [Streptococcus suis SC84]
 gi|251818921|emb|CAZ56764.1| putative deaminase [Streptococcus suis BM407]
 gi|251820770|emb|CAR47532.1| putative deaminase [Streptococcus suis P1/7]
 gi|292559319|gb|ADE32320.1| Cytosine/adenosine deaminase [Streptococcus suis GZ1]
 gi|319759114|gb|ADV71056.1| cytosine/adenosine deaminase [Streptococcus suis JS14]
          Length = 173

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM+ AL+ +R    L      + C+IVKDG +IGRG  A         HAEV A++EA
Sbjct: 9   EYFMTQALQEARKS--LEKDEIPIGCVIVKDGQIIGRGHNAREELNQAIMHAEVMAIQEA 66

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                      +T +VT+EPC        C+  I    I +V+    +     +G     
Sbjct: 67  NNVEGNWRLLDSTLFVTIEPC------VMCSGAIGLARIPQVIYGATNKKFGAAGSLYDI 120

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   ++E+E    +  + 
Sbjct: 121 LTDERLNHRVKVETGILEAECANIMQDFF 149


>gi|301169624|emb|CBW29225.1| tRNA-specific adenosine deaminase [Haemophilus influenzae 10810]
          Length = 173

 Score = 89.2 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 62/174 (35%), Gaps = 23/174 (13%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHAEVQ 58
           S FD + M  AL  +     L      V  ++V D G +IG G            HAE+ 
Sbjct: 8   SEFDEKMMRYALELADKAEAL--GEIPVGAVLVDDAGNIIGEGWNLSIVQSDPTAHAEII 65

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL    +  +      +T YVTLEPC        CA  I+   I+R+V    D      G
Sbjct: 66  ALRNGAKNIQNYRLLNSTLYVTLEPC------TMCAGAILHSRIKRLVFGASDYKTGAIG 119

Query: 114 RGLQ-----WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
                     ++    I   ++  E    L  +  ++ E++      +    D 
Sbjct: 120 SRFHFFDDYKMNHTLEITSGVLAEECSQKLSTFFQKRREEKKIEKALLKSLSDK 173


>gi|37523103|ref|NP_926480.1| riboflavin-specific deaminase [Gloeobacter violaceus PCC 7421]
 gi|35214106|dbj|BAC91475.1| riboflavin-specific deaminase [Gloeobacter violaceus PCC 7421]
          Length = 232

 Score = 89.2 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 74/223 (33%), Gaps = 15/223 (6%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD-------D 204
            T+ + +S D  I  A   +   +  +    +    + +D IL+G GT+  +       D
Sbjct: 10  TTIVLGMSADGKIAPADPLAPRRSDPVDHAHLEYQTSLADLILIGAGTIRIEGQTYTVSD 69

Query: 205 PEL-TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
           P+    R    Q   P+  ++     L  D       +    I+ TE            +
Sbjct: 70  PQWIAARQARGQPPQPITCVVSRSLDLPPDLPFFAQPIE-RWILTTEQAVARSPHPRLAE 128

Query: 264 NINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
              ++    +  D ++       RG+  +   GG  +  + + +  +D + L    ++ G
Sbjct: 129 LATLVAAGENELDWERAYAFFAERGIGRVAALGGGDLVAALLAAGRIDDLWLTVWPVIFG 188

Query: 322 EGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYIGKNLC 360
                +P+E    E         V       D+ L Y     C
Sbjct: 189 GREATTPVEGAGFEPLKAPALELVELRQTAGDLFLHYRVIKPC 231


>gi|160876246|ref|YP_001555562.1| zinc-binding CMP/dCMP deaminase [Shewanella baltica OS195]
 gi|160861768|gb|ABX50302.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica OS195]
 gi|315268435|gb|ADT95288.1| CMP/dCMP deaminase zinc-binding protein [Shewanella baltica OS678]
          Length = 175

 Score = 89.2 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 54/152 (35%), Gaps = 22/152 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
           D ++M  A+  +            V  ++VKDG  I  G       +    HAE+  L E
Sbjct: 13  DEQWMQVAMLMAEKAE--AEGEVPVGAVLVKDGQQIATGYNLSISQHDPSAHAEILCLRE 70

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AG          AT YVTLEPC+       CA  ++   I RVV    D     +G  + 
Sbjct: 71  AGRLVENYRLLDATLYVTLEPCAM------CAGAMVHSRIARVVFGARDEKTGAAGTVVN 124

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTR 144
            L          +   ++       L  +  R
Sbjct: 125 LLQHPAFNHQVEVTSGVLADACSAQLSRFFKR 156


>gi|325566945|ref|ZP_08143723.1| tRNA-specific adenosine deaminase [Enterococcus casseliflavus ATCC
           12755]
 gi|325159117|gb|EGC71262.1| tRNA-specific adenosine deaminase [Enterococcus casseliflavus ATCC
           12755]
          Length = 168

 Score = 89.2 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 17/123 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
           A FM  A++ +R   G+      +  ++V DG +IGRG     T      HAE+ A+EEA
Sbjct: 13  AFFMEEAIKEARKAEGVAEV--PIGAVVVLDGKIIGRGHNLRETQQQAAAHAEMFAIEEA 70

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                      A  +VTLEPC      P C+  ++   +  V     DP    +G  +  
Sbjct: 71  CRTVGSWRLEQAQLFVTLEPC------PMCSGAMLLARVEEVYFGAYDPKGGTAGTLMNL 124

Query: 119 LSQ 121
           L  
Sbjct: 125 LED 127


>gi|303251559|ref|ZP_07337733.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|303252205|ref|ZP_07338373.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302648988|gb|EFL79176.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302649557|gb|EFL79739.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 174

 Score = 89.2 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 50/131 (38%), Gaps = 18/131 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHA 55
           + +S  D  FM  AL  +     +      V  ++V  +G +IG G            HA
Sbjct: 12  LTISEQDIHFMRYALELADRAEAI--GEIPVGAVLVDQEGNIIGEGWNQVIQLSDPSAHA 69

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+ +AG+  R       T YVTLEPC        CA  I+   +RR+V    D    
Sbjct: 70  EMLAIRQAGKVQRNYRLLDCTLYVTLEPC------TMCAGAILHSRLRRLVFGASDYKTG 123

Query: 111 VSGRGLQWLSQ 121
             G        
Sbjct: 124 AIGSRFHLFED 134


>gi|78043781|ref|YP_361468.1| cytidine/deoxycytidylate deaminase family protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995896|gb|ABB14795.1| cytidine/deoxycytidylate deaminase family protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 153

 Score = 89.2 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
            +FM+ AL+ +            V  ++V +G +IGRG            HAE+ AL+EA
Sbjct: 4   EKFMAEALKEAEKAALQ--GEVPVGAVVVYNGEIIGRGHNLRETFSDPTAHAEIVALKEA 61

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                  + +  T YVT+EPC      P CA  I +  I+ +V    D            
Sbjct: 62  ASKLKNWQLKDCTLYVTVEPC------PMCAGAIYQARIKTLVYGAPDLKAGAVDTLFDL 115

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  ++  ++ +E    +  + 
Sbjct: 116 VRNPRLNHRVEVISGVLAAEASKIITDFF 144


>gi|332994184|gb|AEF04239.1| cytidine/deoxycytidylate deaminase family protein [Alteromonas sp.
           SN2]
          Length = 180

 Score = 89.2 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 17/122 (13%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
           ++M  AL  +     +      V   +V +G +IG G     T      HAE+ A+  A 
Sbjct: 16  KWMQHALSLADKAEAM--GEVPVGACVVHNGELIGEGWNTPITDSDPSAHAEMNAVRMAA 73

Query: 65  EEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           +  +      AT YVTLEPCS       CA  ++   I+RVV    D     +G  +  L
Sbjct: 74  KHLQNYRTTDATLYVTLEPCSM------CAGMLVHARIKRVVYGASDAKTGAAGSEMNIL 127

Query: 120 SQ 121
           + 
Sbjct: 128 NH 129


>gi|301051758|ref|YP_003789969.1| putative cytidine/deoxycytidylate deaminase family protein
           [Bacillus anthracis CI]
 gi|300373927|gb|ADK02831.1| probable cytidine/deoxycytidylate deaminase family protein
           [Bacillus cereus biovar anthracis str. CI]
          Length = 166

 Score = 89.2 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV +G VI        T      HAE+ A+
Sbjct: 4   DQDIYFMQLAIEEAKKAEAIQE--VPIGAVIVLNGEVISAAHNLRETEQRSIAHAELLAI 61

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA ++        AT YVTLEPC      P CA  I+   + RVV    DP    +G  
Sbjct: 62  DEACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVNRVVYGAGDPKGGCAGTL 115

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +  L     + +  +V  ++E E    L  + 
Sbjct: 116 MNLLTDERFNHQCEVVAGVLEEECGTLLTNFF 147


>gi|253731164|ref|ZP_04865329.1| deaminase [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253725129|gb|EES93858.1| deaminase [Staphylococcus aureus subsp. aureus USA300_TCH959]
          Length = 156

 Score = 89.2 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 59/150 (39%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  FM+ A++ ++    L      +  +I KD  VI R      T      HAE  A+E 
Sbjct: 4   DIYFMTLAIKEAKKAAQL--GEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIER 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +        G T YVTLEPC        CA  I+   I RVV   DDP    SG  + 
Sbjct: 62  AAKVLGSWRLEGCTLYVTLEPC------VMCAGTIVMSRIPRVVYGADDPKGGCSGSLMN 115

Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYL 142
            L       + I+   +++      L  + 
Sbjct: 116 LLQQSNFNHRAIVDKGVLKEACSTLLTTFF 145


>gi|315652559|ref|ZP_07905540.1| cytidine/deoxycytidylate deaminase [Eubacterium saburreum DSM 3986]
 gi|315485188|gb|EFU75589.1| cytidine/deoxycytidylate deaminase [Eubacterium saburreum DSM 3986]
          Length = 157

 Score = 89.2 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 17/127 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEE 62
           D  F+  A++ ++    L+  +  + C+IV +  +I RG            HAE+ A+++
Sbjct: 4   DDYFLKEAVKQAKKA--LSIGDVPIGCVIVFEDKIIARGYNRRNKDKSTLSHAEIIAIKK 61

Query: 63  AGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++         T Y+TLEPC      P CA  I++  I+R V+   +P    +G  L 
Sbjct: 62  ACKKMGDWRLEDCTMYITLEPC------PMCAGAIVQSRIKRAVLGAMNPKAGCAGSVLN 115

Query: 118 WLSQKGI 124
            L   G 
Sbjct: 116 ILQTDGF 122


>gi|229015424|ref|ZP_04172427.1| hypothetical protein bcere0030_220 [Bacillus cereus AH1273]
 gi|229021629|ref|ZP_04178217.1| hypothetical protein bcere0029_110 [Bacillus cereus AH1272]
 gi|228739675|gb|EEL90083.1| hypothetical protein bcere0029_110 [Bacillus cereus AH1272]
 gi|228745866|gb|EEL95865.1| hypothetical protein bcere0030_220 [Bacillus cereus AH1273]
          Length = 164

 Score = 89.2 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV D  VI        T      HAE+ A+
Sbjct: 2   DRDIYFMQLAIEEAKKAEAIQE--VPIGAVIVLDDEVISVAHNLRETEQRSIAHAELLAI 59

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  
Sbjct: 60  DEACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTL 113

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +  L     + +  +V  ++E E    L  + 
Sbjct: 114 MNLLTDERFNHQCEVVAGVLEEECGTLLTNFF 145


>gi|270264772|ref|ZP_06193037.1| hypothetical protein SOD_i01890 [Serratia odorifera 4Rx13]
 gi|270041455|gb|EFA14554.1| hypothetical protein SOD_i01890 [Serratia odorifera 4Rx13]
          Length = 168

 Score = 89.2 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 57/150 (38%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M  AL  ++           V  L+V D  VIG G     G      HAE+ AL +
Sbjct: 6   DEYWMRQALLLAQRAQ--EEGEVPVGALLVLDNQVIGEGWNRPIGRHDPTAHAEIMALRQ 63

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            G   +      AT YVTLEPC        CA  ++   IRR+V    D     +G  + 
Sbjct: 64  GGAVLQNYRLLNATLYVTLEPC------VMCAGAMVHSRIRRLVYGAADVKTGAAGSLVD 117

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYL 142
            L   G+     I   ++  E    L  + 
Sbjct: 118 ILRHPGMNHQVEIASGVLADECAATLSNFF 147


>gi|89094120|ref|ZP_01167063.1| hypothetical protein MED92_16295 [Oceanospirillum sp. MED92]
 gi|89081595|gb|EAR60824.1| hypothetical protein MED92_16295 [Oceanospirillum sp. MED92]
          Length = 168

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 51/130 (39%), Gaps = 17/130 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGG---CPHAE 56
           M  S  D  +M  AL  +     L      V  L+V DG V+G G      G     HAE
Sbjct: 1   MDTSKTDLHWMERALELADRAEQLNEV--PVGALVVLDGEVVGEGWNHPISGNDPTAHAE 58

Query: 57  VQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL  A ++       GA  +VT+EPC        C+  I+   I+RV+    +     
Sbjct: 59  MMALRAAAQKVGNYRLVGAELFVTIEPC------TMCSGAIVHARIKRVIYGATEAKSGA 112

Query: 112 SGRGLQWLSQ 121
                Q  SQ
Sbjct: 113 VDSNCQLFSQ 122


>gi|257066772|ref|YP_003153028.1| CMP/dCMP deaminase zinc-binding [Anaerococcus prevotii DSM 20548]
 gi|256798652|gb|ACV29307.1| CMP/dCMP deaminase zinc-binding [Anaerococcus prevotii DSM 20548]
          Length = 180

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 52/130 (40%), Gaps = 17/130 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57
             S  D  FM+ A+  +R    +      V  ++V DG +IGRG            HAE+
Sbjct: 21  TFSKEDYFFMAEAINEARVARFI--EEVPVGAVVVYDGKIIGRGHNLTYKGKSALKHAEL 78

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A++EA            T YVT+EPCS       CA  II   I R+VV + D      
Sbjct: 79  MAIKEASSWMDDFRLEECTMYVTMEPCSM------CAGAIINSRIDRLVVGIRDHKRGAC 132

Query: 113 GRGLQWLSQK 122
           G        +
Sbjct: 133 GSNTNVCGDR 142


>gi|330833669|ref|YP_004402494.1| cytosine/adenosine deaminase [Streptococcus suis ST3]
 gi|329307892|gb|AEB82308.1| cytosine/adenosine deaminase [Streptococcus suis ST3]
          Length = 173

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM+ AL+ +R    L      + C+IVKDG +IGRG  A         HAEV A++EA
Sbjct: 9   EYFMTQALQEARKS--LEKDEIPIGCVIVKDGQIIGRGHNAREELNQAIMHAEVMAIQEA 66

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                      +T +VT+EPC        C+  I    I +V+    +     +G     
Sbjct: 67  NNVEGNWRLLDSTLFVTIEPC------VMCSGAIGLARIPQVIYGATNKKFGAAGSLYDI 120

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   ++E+E    +  + 
Sbjct: 121 LTDERLNHRVKVETGILEAECANIMQDFF 149


>gi|293400048|ref|ZP_06644194.1| cytidine/deoxycytidylate deaminase family protein
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306448|gb|EFE47691.1| cytidine/deoxycytidylate deaminase family protein
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 157

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 54/149 (36%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
             FM  A++ +     +      + C+IV    +I R             HAE+ A+E+A
Sbjct: 3   ENFMLEAIKEAEKAFAIDEV--PIGCVIVYQNKIIARAHNLRESKQSAIAHAEILAIEKA 60

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T YVTLEPC      P C+  II+  ++ VV    DP        ++ 
Sbjct: 61  CNIIGSWRLEDCTLYVTLEPC------PMCSGAIIQSRMKTVVFGAYDPKGGCIKSCMKM 114

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYL 142
               G       +  ++E E    L  + 
Sbjct: 115 YETPGFNHYPETIGGILEEECGALLKQFF 143


>gi|242240191|ref|YP_002988372.1| CMP/dCMP deaminase zinc-binding [Dickeya dadantii Ech703]
 gi|242132248|gb|ACS86550.1| CMP/dCMP deaminase zinc-binding [Dickeya dadantii Ech703]
          Length = 164

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 52/133 (39%), Gaps = 17/133 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
           M   + D  +M  AL  ++           V  ++V+ G VIG G     G      HAE
Sbjct: 1   MDTLADDEYWMRHALILAQRAW--DEGEVPVGAVLVQGGKVIGEGWNRPIGQHDPTAHAE 58

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL + G   +       T Y+TLEPC        CA  ++   I R+V    D     
Sbjct: 59  MMALRQGGRVLQNYRLLDTTLYITLEPCIM------CAGAMVHSRISRLVYGAADAKTGA 112

Query: 112 SGRGLQWLSQKGI 124
           +G  +  L   G+
Sbjct: 113 AGSLVDILRHPGM 125


>gi|169825638|ref|YP_001695796.1| hypothetical protein Bsph_0024 [Lysinibacillus sphaericus C3-41]
 gi|168990126|gb|ACA37666.1| Hypothetical yaaJ protein [Lysinibacillus sphaericus C3-41]
          Length = 170

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 59/156 (37%), Gaps = 22/156 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M +   D  FM  AL  ++    L      +  ++V DG +I R      T      HAE
Sbjct: 1   MDIFETDRLFMKQALEEAKKAAIL--GEVPIGAVLVYDGEIIARAHNLRETTQNATTHAE 58

Query: 57  VQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +  ++EA ++         T YVTLEPC      P CA  I++  + RVV    D     
Sbjct: 59  LMVIQEACQKIGSWRLEKTTLYVTLEPC------PMCAGAILQSRVPRVVYGARDIKAGC 112

Query: 112 SGRGLQWLSQK-----GIIVDRMMESEGKIFLHAYL 142
                + L+         + + ++  E    L  + 
Sbjct: 113 VDSLYRILNDARFNHECEVSEGILADECGQILTDFF 148


>gi|308389629|gb|ADO31949.1| cytidine and deoxycytidylate deaminase family protein [Neisseria
           meningitidis alpha710]
          Length = 239

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 60/156 (38%), Gaps = 22/156 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P       FM  ALR +            V  +IV DG +I               HAE+
Sbjct: 87  PPQEEMEHFMREALRQAEQSA--ADGEIPVGAVIVSDGKIIASAHNTCIADCNVSCHAEI 144

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+    +P    +
Sbjct: 145 NALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGAAEPKTGAA 198

Query: 113 GRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLT 143
           G  +       L+    I   +++ E +  L  +  
Sbjct: 199 GSIVNLFADKRLNTHTAIRGGILQEECRAVLSRFFQ 234


>gi|229828779|ref|ZP_04454848.1| hypothetical protein GCWU000342_00853 [Shuttleworthia satelles DSM
           14600]
 gi|229793373|gb|EEP29487.1| hypothetical protein GCWU000342_00853 [Shuttleworthia satelles DSM
           14600]
          Length = 154

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 59/146 (40%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA--- 63
           M  A+R +R    +      + C+I ++G +I RG            HAE+ A+++A   
Sbjct: 1   MKEAIRQARKAEAI--EEVPIGCVIEREGKIIARGYNRRNIDHSVLKHAEITAIQKACRK 58

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS- 120
                    T YVTLEPC        CA  I++  I RVV+   +P    +G  +  L  
Sbjct: 59  LGDWRLEDCTLYVTLEPC------QMCAGAIVQARIPRVVIGAMNPKAGSAGSVINLLQM 112

Query: 121 ----QKGIIVDRMMESEGKIFLHAYL 142
                +  I   +ME +    L  + 
Sbjct: 113 REFNHQAEIEKGVMEEDCSALLSHFF 138


>gi|238793763|ref|ZP_04637384.1| tRNA-specific adenosine deaminase [Yersinia intermedia ATCC 29909]
 gi|238726827|gb|EEQ18360.1| tRNA-specific adenosine deaminase [Yersinia intermedia ATCC 29909]
          Length = 181

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 55/149 (36%), Gaps = 21/149 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57
           P    D  +M  AL  +            V  ++V    VIG G            HAE+
Sbjct: 14  PAEYSDEYWMQRALTLALRAQN--EGEVPVGAVLVLGNQVIGEGWNKSIRDNDPTAHAEI 71

Query: 58  QALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL + G+  +      AT YVTLEPC        CA  +I   IRR+V   +D     +
Sbjct: 72  MALRQGGQVVQNYRLLEATLYVTLEPC------VMCAGAMIHSRIRRLVYGANDLKTGAA 125

Query: 113 GRGLQWLSQKG----IIVDRMMESEGKIF 137
           G  +  L   G    I V   + +E    
Sbjct: 126 GSLVDILHHPGMNHQIEVSAGVLAETCSH 154


>gi|291544028|emb|CBL17137.1| tRNA-adenosine deaminase [Ruminococcus sp. 18P13]
          Length = 151

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 57/152 (37%), Gaps = 23/152 (15%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAY----GGCPHAEVQA 59
            D  +M  A+  +     L      V  L+V+D  G V+GRG            HAEV A
Sbjct: 2   DDFAYMRQAMELAEQAAAL--GEIPVGALVVQDATGEVLGRGYNRREVDHDPTAHAEVLA 59

Query: 60  LEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           + +A          G T YVTLEPC      P C   II   +RRVV    D     +  
Sbjct: 60  IRQAALAIGSWRLSGCTLYVTLEPC------PMCCGTIINARVRRVVFGAYDSKAGSADS 113

Query: 115 GLQWLS----QKGIIVDRMMESEGKIFLHAYL 142
            +   +     K  +   ++E   K  L  + 
Sbjct: 114 VINLFALPYNHKPAVTGGLLEDACKEQLQRFF 145


>gi|255732273|ref|XP_002551060.1| DRAP deaminase [Candida tropicalis MYA-3404]
 gi|240131346|gb|EER30906.1| DRAP deaminase [Candida tropicalis MYA-3404]
          Length = 590

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 12/137 (8%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEE---- 62
            +FM  A+  +    G T T  +V C++V +G VI  G +    G  HAE  ALE+    
Sbjct: 437 RKFMEMAIEQAEK-CGETQTQFNVGCVLVNNGKVISTGHSRELPGNTHAEQCALEKYFAE 495

Query: 63  ---AGEEARGATAYVTLEPCS-HYGRSPPCAQFIIE-CGIRRVVVCVDDPDVR-VSGRGL 116
                E   G   + T+EPCS     + PC   I+E  GI+   V V +PD+   +    
Sbjct: 496 HDGVKEVPEGTEIFTTMEPCSLRLSGNLPCVDRILETKGIKTCFVGVLEPDIFVKNNSSY 555

Query: 117 QWLSQKGIIVDRMMESE 133
           Q L + G+    +   E
Sbjct: 556 QKLLKNGVQYIHIPGYE 572


>gi|253988801|ref|YP_003040157.1| tRNA -specific adenosine deaminase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780251|emb|CAQ83412.1| similar to ecoli yfhc protein, tRNA-specific adenosine deaminase
           [Photorhabdus asymbiotica]
          Length = 169

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 64/175 (36%), Gaps = 21/175 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
           M     D  +M  A+  +            V  ++V D  +I  G       +    HAE
Sbjct: 1   MTKIYSDEYWMQQAMERAIKAW--EQGEIPVGAVLVADNEIIAEGWNQSIIAHDPSAHAE 58

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           V AL + GE+ +       T YVTLEPC+       CA  +I   I+R+V    D     
Sbjct: 59  VIALRKGGEQLQNYRLLNTTLYVTLEPCAM------CAGAMIHSRIQRLVYGASDMKTGA 112

Query: 112 SGRGLQWLSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           +G  +  L   G    I +   + +E    + +   +Q  ++          Q+ 
Sbjct: 113 AGSLIDILRHPGMNHQIEITGGVLAEACSTMLSVFFKQRREQHKALKAARRQQEE 167


>gi|289669069|ref|ZP_06490144.1| hypothetical protein XcampmN_11383 [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 174

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 64/164 (39%), Gaps = 22/164 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHAE 56
           P S+ D  +M  AL  +          P V  L+V  +G V+G G      ++    HAE
Sbjct: 15  PHSAIDLHWMQHALHLAERAERDYDEIP-VGALVVDAEGNVLGEGWNFNIASHDPSAHAE 73

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ EAG         G T YVTLEPC+       CA  +I   I RVV    DP    
Sbjct: 74  IVAMREAGRRLANHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGA 127

Query: 112 SGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
            G     L+         +   ++ +E  + L  Y   +  K  
Sbjct: 128 CGSVFDLLADPRHNHHVRVSGGVLAAEASLRLTNYFRAKRGKPP 171


>gi|325917446|ref|ZP_08179655.1| tRNA-adenosine deaminase [Xanthomonas vesicatoria ATCC 35937]
 gi|325536320|gb|EGD08107.1| tRNA-adenosine deaminase [Xanthomonas vesicatoria ATCC 35937]
          Length = 171

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 64/164 (39%), Gaps = 22/164 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAE 56
           P ++ D  +M  AL+ +          P V  +++  +G V+G G       +    HAE
Sbjct: 12  PQAAIDTHWMQHALQLAERAERDYDEIP-VGAVLIDAEGQVLGEGWNYNIASHDPSAHAE 70

Query: 57  VQALEE-----AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ E     A     G T YVTLEPC+       CA  +I   I RVV    DP    
Sbjct: 71  IMAMREGGRRLANHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGA 124

Query: 112 SGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
            G     L+      +  +   ++ +E  + L  Y   +  K  
Sbjct: 125 CGSVFDLLADPRHNHRVHVAGGVLAAEASLRLTNYFRAKRGKPP 168


>gi|293367940|ref|ZP_06614578.1| tRNA-specific adenosine deaminase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291317969|gb|EFE58377.1| tRNA-specific adenosine deaminase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329737844|gb|EGG74076.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Staphylococcus epidermidis VCU045]
          Length = 168

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 55/147 (37%), Gaps = 22/147 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
           +M  A+  +     L      +  +IVK+G VI R      T      HAE  A+E A E
Sbjct: 7   YMRLAINEAHKAKAL--GEVPIGAVIVKEGQVIARAHNLRETLQQPTAHAEHIAIERASE 64

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                     T YVTLEPC        CA  II   I +VV    D     SG  +  L 
Sbjct: 65  VVGSWRLEECTLYVTLEPC------VMCAGTIIMSRIPKVVYGATDSKGGCSGSLMNLLE 118

Query: 121 -----QKGIIVDRMMESEGKIFLHAYL 142
                 +  +   ++E E    L ++ 
Sbjct: 119 QPQFNHRATVEKGILEEECAELLRSFF 145


>gi|220930799|ref|YP_002507708.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulolyticum H10]
 gi|220001127|gb|ACL77728.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulolyticum H10]
          Length = 152

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
            +FM AA++ ++        +P V  +IVK+G +I  G            HAE++AL++A
Sbjct: 6   EQFMLAAIQQAKEA-YKNGESP-VGAVIVKNGEIIAYGCNRREEKLDVTSHAEIEALKKA 63

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            +     +  G   YVTLEPC      P CA  II+  I+ + +   D     +G  +  
Sbjct: 64  AKEIGTWKLDGCDMYVTLEPC------PMCAGAIIQSRIKTLYIGAMDKKSGSAGSVVDL 117

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYL 142
                   +  +V  +M  E    L  + 
Sbjct: 118 FRVPQFNHRVDVVYGLMFEECGTILTEFF 146


>gi|322514212|ref|ZP_08067274.1| tRNA-specific adenosine deaminase [Actinobacillus ureae ATCC 25976]
 gi|322119905|gb|EFX91914.1| tRNA-specific adenosine deaminase [Actinobacillus ureae ATCC 25976]
          Length = 196

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 49/129 (37%), Gaps = 18/129 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAEV 57
           +S+ D  FM  AL  +     +      V  +++  DG +IG G            HAE+
Sbjct: 36  ISAQDIHFMQYALALADRAEAIDE--IPVGAVLIDSDGNIIGEGWNQVIQLADPSAHAEM 93

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+ +AG+        G T YVTLEPC        CA  I+   + R+V    D      
Sbjct: 94  LAIRQAGKVQNNYRLLGCTLYVTLEPC------TMCAGAILHSRLHRLVFGASDYKTGAI 147

Query: 113 GRGLQWLSQ 121
           G        
Sbjct: 148 GSRFHLFED 156


>gi|56751392|ref|YP_172093.1| hypothetical protein syc1383_d [Synechococcus elongatus PCC 6301]
 gi|56686351|dbj|BAD79573.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 161

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 16/118 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M ++  D RFM  A+  SR    +  T     C+I ++G +I  G     T      HAE
Sbjct: 1   MSLAE-DERFMRRAIALSRQAGLIDCTGGPFGCVITRNGEIIAEGFNQVLTERDPTWHAE 59

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           + A+ +A +  +     G T Y + EPC      P CA  +    + R+V      D 
Sbjct: 60  IAAIRQACQHLQTVDLSGCTLYTSAEPC------PMCAAAVYWAKLERLVFATRCSDT 111


>gi|332973009|gb|EGK10948.1| cytidine/deoxycytidylate deaminase [Psychrobacter sp. 1501(2011)]
          Length = 207

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 18/126 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
            S  D + M AAL  ++   G +     V  ++V++G +IG G            HAE+ 
Sbjct: 49  WSLSDVKCMQAALELAQ--QGASKEEVPVGAVLVQEGNIIGEGFNQPILTCDPTAHAEIV 106

Query: 59  ALEEAGEEAR------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           AL  A             T YVTLEPC        C   +I   + R+V    +P   + 
Sbjct: 107 ALRSACSALENYRLPANTTLYVTLEPC------TMCLGALIHARLSRLVFATQEPRAGMV 160

Query: 113 GRGLQW 118
           G  L  
Sbjct: 161 GSQLNL 166


>gi|313889859|ref|ZP_07823501.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121904|gb|EFR45001.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 174

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 59/149 (39%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ +     L      + C+IVKDG +IGRG  A         HAE+ A+ EA
Sbjct: 10  EFFMREALKEAEKS--LVKAEIPIGCVIVKDGKIIGRGHNAREELNQAIMHAEIMAINEA 67

Query: 64  GEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
               +       + +VT+EPC        C+  I    I  VV    +     +G   Q 
Sbjct: 68  NAHEKNWRLLETSLFVTIEPC------VMCSGAIGLARIPHVVFGAPNQKFGGAGSLYQI 121

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   ++E+E    +  + 
Sbjct: 122 LTDQRLNHRVELESGLLEAECAKMMQDFF 150


>gi|228989231|ref|ZP_04149225.1| hypothetical protein bpmyx0001_110 [Bacillus pseudomycoides DSM
           12442]
 gi|228995414|ref|ZP_04155085.1| hypothetical protein bmyco0003_200 [Bacillus mycoides Rock3-17]
 gi|229003028|ref|ZP_04160886.1| hypothetical protein bmyco0002_210 [Bacillus mycoides Rock1-4]
 gi|228758228|gb|EEM07415.1| hypothetical protein bmyco0002_210 [Bacillus mycoides Rock1-4]
 gi|228764340|gb|EEM13216.1| hypothetical protein bmyco0003_200 [Bacillus mycoides Rock3-17]
 gi|228770506|gb|EEM19076.1| hypothetical protein bpmyx0001_110 [Bacillus pseudomycoides DSM
           12442]
          Length = 165

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A+  ++    +      +  +IV  G VI        T      HAE+ A+
Sbjct: 2   EQDIYFMQLAIEEAKKAEEIQE--VPIGAVIVLGGEVISVAHNLRETEQRSIAHAELLAI 59

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA ++        AT YVTLEPC      P CA  I+   ++RVV    DP    +G  
Sbjct: 60  DEACKKLGTWRLENATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTL 113

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +  L     + +  +V  +ME E  + L  + 
Sbjct: 114 MNLLTDERFNHQCEVVSGVMEEECGMLLTNFF 145


>gi|22125207|ref|NP_668630.1| tRNA-specific adenosine deaminase [Yersinia pestis KIM 10]
 gi|162421541|ref|YP_001607945.1| tRNA-specific adenosine deaminase [Yersinia pestis Angola]
 gi|165928230|ref|ZP_02224062.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939213|ref|ZP_02227763.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008235|ref|ZP_02229133.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212350|ref|ZP_02238385.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399598|ref|ZP_02305122.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167421139|ref|ZP_02312892.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423684|ref|ZP_02315437.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167467717|ref|ZP_02332421.1| tRNA-specific adenosine deaminase [Yersinia pestis FV-1]
 gi|270489818|ref|ZP_06206892.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Yersinia pestis KIM D27]
 gi|294504520|ref|YP_003568582.1| deaminase [Yersinia pestis Z176003]
 gi|21958073|gb|AAM84881.1|AE013733_2 putative deaminase [Yersinia pestis KIM 10]
 gi|162354356|gb|ABX88304.1| tRNA-specific adenosine deaminase [Yersinia pestis Angola]
 gi|165912813|gb|EDR31440.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165919737|gb|EDR37070.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992617|gb|EDR44918.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206281|gb|EDR50761.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166960628|gb|EDR56649.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167052102|gb|EDR63510.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057854|gb|EDR67600.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|262362488|gb|ACY59209.1| deaminase [Yersinia pestis D106004]
 gi|262366507|gb|ACY63064.1| deaminase [Yersinia pestis D182038]
 gi|270338322|gb|EFA49099.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Yersinia pestis KIM D27]
 gi|294354979|gb|ADE65320.1| deaminase [Yersinia pestis Z176003]
          Length = 200

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 17/132 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57
           P    D  +M  AL  +            V  ++V    VIG G            HAE+
Sbjct: 33  PAEYSDEYWMRHALTLALRAQ--EEGEVPVGAVLVLGNKVIGEGWNRPIRDNDPTAHAEI 90

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL + G+  +      AT YVTLEPC        CA  ++   IRR+V   +D     +
Sbjct: 91  MALRQGGQAVQNYRLLDATLYVTLEPC------VMCAGAMVHSRIRRLVYGANDVKTGAA 144

Query: 113 GRGLQWLSQKGI 124
           G  +  L   G+
Sbjct: 145 GSLVDILRHPGM 156


>gi|209558752|ref|YP_002285224.1| Cytosine deaminase [Streptococcus pyogenes NZ131]
 gi|209539953|gb|ACI60529.1| Cytosine deaminase [Streptococcus pyogenes NZ131]
          Length = 171

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 65/178 (36%), Gaps = 23/178 (12%)

Query: 1   MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
           MP S      FM  AL+ +   +        + C+IVKDG +IGRG  A         HA
Sbjct: 1   MPYSLEEQTYFMQEALKEAEKSLQKAE--IPIGCVIVKDGEIIGRGHNAREESNQAIMHA 58

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+ EA            T +VT+EPC        C+  I    I  V+    +    
Sbjct: 59  EMMAINEANAHEGNWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVIYGASNQKFG 112

Query: 111 VSGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163
            +    Q      L+ +  +   ++ ++    +  +  +  E++      I    D  
Sbjct: 113 GADSLYQILTDERLNHRVQVERGLLAADCANIMQTFFRQGRERKKIAKYLIKEQSDPF 170


>gi|16077086|ref|NP_387899.1| tRNA specific adenosine deaminase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221307827|ref|ZP_03589674.1| hypothetical protein Bsubs1_00090 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312149|ref|ZP_03593954.1| hypothetical protein BsubsN3_00090 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317082|ref|ZP_03598376.1| hypothetical protein BsubsJ_00090 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321345|ref|ZP_03602639.1| hypothetical protein BsubsS_00090 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|112703|sp|P21335|TADA_BACSU RecName: Full=tRNA-specific adenosine deaminase
 gi|40011|emb|CAA36389.1| unnamed protein product [Bacillus subtilis subsp. subtilis str.
           168]
 gi|467408|dbj|BAA05254.1| unknown [Bacillus subtilis]
 gi|2632285|emb|CAB11794.1| tRNA specific adenosine deaminase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|227231|prf||1617102A 17kD protein
          Length = 161

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
           + D  +M  A++ ++           +  ++V +G +I R      T      HAE+  +
Sbjct: 2   TQDELYMKEAIKEAKKAE--EKGEVPIGAVLVINGEIIARAHNLRETEQRSIAHAEMLVI 59

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA +        GAT YVTLEPC      P CA  ++   + +VV    DP    SG  
Sbjct: 60  DEACKALGTWRLEGATLYVTLEPC------PMCAGAVVLSRVEKVVFGAFDPKGGCSGTL 113

Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
           +  L       +  +V  ++E E    L A+ 
Sbjct: 114 MNLLQEERFNHQAEVVSGVLEEECGGMLSAFF 145


>gi|23097481|ref|NP_690947.1| hypothetical protein OB0026 [Oceanobacillus iheyensis HTE831]
 gi|22775704|dbj|BAC11982.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 166

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            +  +IV DG ++G+G            HAE+ A++EA            T YVTLEPC 
Sbjct: 31  PIGAVIVHDGEIVGKGFNLRESMQATLTHAELLAMQEANNEIGSWRLEDCTLYVTLEPC- 89

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL-----SQKGIIVDRMMESEGK 135
                P CA  I++  ++RVV    DP    +G  +  L     + +  +   ++E +  
Sbjct: 90  -----PMCAGAIVQSRMKRVVYGAPDPKAGCAGTIMNLLNEPRFNHQVEVTSGVLEQQCS 144

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 145 TILKEFF 151


>gi|260550109|ref|ZP_05824323.1| cytosine/adenosine deaminase [Acinetobacter sp. RUH2624]
 gi|260406864|gb|EEX00343.1| cytosine/adenosine deaminase [Acinetobacter sp. RUH2624]
          Length = 167

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 45/125 (36%), Gaps = 18/125 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M  A   +            V  +IV    +IG G  A  G      HAE+QA+  
Sbjct: 6   DEYWMQLAYEQAELAA--EQGEIPVGAVIVSQNKLIGAGFNAPIGLSDPTAHAEIQAIRS 63

Query: 63  AGEEAR------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           A +  +       AT YVTLEPC        C   ++   I+ VV    +P         
Sbjct: 64  ACQLLKNYRLPEDATLYVTLEPC------TMCVGALVHARIKHVVFGTVEPKAGSLVSTR 117

Query: 117 QWLSQ 121
           Q L  
Sbjct: 118 QLLEN 122


>gi|261492526|ref|ZP_05989079.1| cytosine deaminase [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261496801|ref|ZP_05993175.1| cytosine deaminase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261307548|gb|EEY08877.1| cytosine deaminase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261311685|gb|EEY12835.1| cytosine deaminase [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 174

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 51/131 (38%), Gaps = 18/131 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHA 55
           + +S  D  FM  AL  +            V  ++V K+  +IGRG            HA
Sbjct: 12  LQISEQDIAFMQYALDLADLAE--AKGEIPVGAVLVDKNQQIIGRGWNQTIQLCDPSAHA 69

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+QA+ +AG+          T YVTLEPC      P CA  I+   I+R+V    D    
Sbjct: 70  EMQAIRQAGQTLGNYRLLDCTLYVTLEPC------PMCAGAILHSRIKRLVFGASDYKTG 123

Query: 111 VSGRGLQWLSQ 121
             G        
Sbjct: 124 AVGSRYHLFED 134


>gi|81298931|ref|YP_399139.1| cytosine/adenosine deaminase-like [Synechococcus elongatus PCC
           7942]
 gi|81167812|gb|ABB56152.1| Cytosine/adenosine deaminases-like [Synechococcus elongatus PCC
           7942]
          Length = 161

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 16/118 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M ++  D RFM  A+  SR    +  T     C+I ++G +I  G     T      HAE
Sbjct: 1   MSLAE-DERFMRRAIALSRQAGLIDCTGGPFGCVITRNGEIIAEGFNQVLTERDPTWHAE 59

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           + A+ +A +  +     G T Y + EPC      P CA  +    + R+V      D 
Sbjct: 60  IAAIRQACQHLQTVDLSGCTLYTSAEPC------PMCAAAVYWAKLDRLVFATRCSDT 111


>gi|293394841|ref|ZP_06639131.1| tRNA-specific adenosine deaminase [Serratia odorifera DSM 4582]
 gi|291422592|gb|EFE95831.1| tRNA-specific adenosine deaminase [Serratia odorifera DSM 4582]
          Length = 179

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 58/156 (37%), Gaps = 22/156 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
           M +   D  +M  AL  +            V  L+V D  VIG G     G      HAE
Sbjct: 11  MMIEYNDDYWMRQALTLALRAQ--EEGEVPVGALLVLDNQVIGEGWNRPIGRHDPTAHAE 68

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL + G   +      AT YVTLEPC        CA  ++   IRR+V    D     
Sbjct: 69  IMALRQGGAVLQNYRLLNATLYVTLEPC------VMCAGAMVHSRIRRLVYGASDEKTGA 122

Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
           +G  +  L   G+     I   ++  E    L  + 
Sbjct: 123 AGSLVDILRHPGMNHQVDITAGVLAEECAATLSNFF 158


>gi|51597197|ref|YP_071388.1| tRNA-specific adenosine deaminase [Yersinia pseudotuberculosis IP
           32953]
 gi|186896294|ref|YP_001873406.1| tRNA-specific adenosine deaminase [Yersinia pseudotuberculosis
           PB1/+]
 gi|51590479|emb|CAH22119.1| putative zinc-binding protein [Yersinia pseudotuberculosis IP
           32953]
 gi|186699320|gb|ACC89949.1| CMP/dCMP deaminase zinc-binding [Yersinia pseudotuberculosis PB1/+]
          Length = 187

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 17/132 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57
           P    D  +M  AL  +            V  ++V    VIG G            HAE+
Sbjct: 20  PAEYSDEYWMRHALTLALRAQ--EEGEVPVGAVLVLGNKVIGEGWNRPIRDNDPTAHAEI 77

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL + G+  +      AT YVTLEPC        CA  ++   IRR+V   +D     +
Sbjct: 78  MALRQGGQAVQNYRLLDATLYVTLEPC------VMCAGAMVHSRIRRLVYGANDVKTGAA 131

Query: 113 GRGLQWLSQKGI 124
           G  +  L   G+
Sbjct: 132 GSLVDILRHPGM 143


>gi|153948638|ref|YP_001400126.1| tRNA-specific adenosine deaminase [Yersinia pseudotuberculosis IP
           31758]
 gi|152960133|gb|ABS47594.1| tRNA-specific adenosine deaminase [Yersinia pseudotuberculosis IP
           31758]
          Length = 200

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 17/132 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57
           P    D  +M  AL  +            V  ++V    VIG G            HAE+
Sbjct: 33  PAEYSDEYWMRHALTLALRAQ--EEGEVPVGAVLVLGNKVIGEGWNRPIRDNDPTAHAEI 90

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL + G+  +      AT YVTLEPC        CA  ++   IRR+V   +D     +
Sbjct: 91  MALRQGGQAVQNYRLLDATLYVTLEPC------VMCAGAMVHSRIRRLVYGANDVKTGAA 144

Query: 113 GRGLQWLSQKGI 124
           G  +  L   G+
Sbjct: 145 GSLVDILRHPGM 156


>gi|170725917|ref|YP_001759943.1| zinc-binding CMP/dCMP deaminase [Shewanella woodyi ATCC 51908]
 gi|169811264|gb|ACA85848.1| CMP/dCMP deaminase zinc-binding [Shewanella woodyi ATCC 51908]
          Length = 169

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 58/158 (36%), Gaps = 22/158 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
           M  +  D  +M  A+  +            V  ++VK+  VI  G     G      HAE
Sbjct: 1   MSQTERDIHYMKLAMDMAAKAE--EKGEVPVGAILVKNDEVISAGFNFCIGSHDPSAHAE 58

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +Q L +AG+          T YVTLEPC+       CA  ++   + R+V    D     
Sbjct: 59  MQCLRQAGKVIENYRLLDTTLYVTLEPCAM------CAGAMVHSRVSRLVFGASDAKTGA 112

Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTR 144
           +G  +  +          +   ++E E    L  +  R
Sbjct: 113 AGTVIDLVRHSAFNHQLEVTQGVLELECAEQLSQFFRR 150


>gi|307249782|ref|ZP_07531760.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858197|gb|EFM90275.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 196

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 49/131 (37%), Gaps = 18/131 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHA 55
           + +S  D  FM  AL  +            V  ++V  +G +IG G            HA
Sbjct: 34  LTISEQDIHFMQYALELADRAE--VIGEIPVGAVLVDQEGNIIGEGWNQVIQLSDPSAHA 91

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+ +AG+  R       T YVTLEPC        CA  I+   +RR+V    D    
Sbjct: 92  EMLAIRQAGKVQRNYRLLDCTLYVTLEPC------TMCAGAILHSRLRRLVFGASDYKTG 145

Query: 111 VSGRGLQWLSQ 121
             G        
Sbjct: 146 AIGSRFHLFED 156


>gi|300784583|ref|YP_003764874.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Amycolatopsis
           mediterranei U32]
 gi|299794097|gb|ADJ44472.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Amycolatopsis
           mediterranei U32]
          Length = 246

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 75/191 (39%), Gaps = 12/191 (6%)

Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIG 198
            +Y       R  + +    S D  + +    +  ++    +    L R  +D ILVG G
Sbjct: 19  ESYAYPAGLSRPWVQVNFVASADGAVEIDTTSAR-LSHAADRKVFLLGRDLADVILVGAG 77

Query: 199 TVLADD-------P-ELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           T  A++       P  L  R   G     P+ ++      L   S++     + P+++ T
Sbjct: 78  TARAENYRGVVAGPKRLERRRRLGFTGVPPIAVV-TRTADLDPASRLFTETAVPPIVVTT 136

Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
           +  D   AL      +     +  DL + L +L  RG+  +  EGG  +    + + LVD
Sbjct: 137 DTAD-TRALEAAGAEVLRAGTEDVDLPRALDLLAARGLRRVDCEGGPGLFARLVAADLVD 195

Query: 310 SIILYRSQIVI 320
            + L  + +++
Sbjct: 196 QLCLTVAPLLV 206


>gi|170023497|ref|YP_001720002.1| tRNA-specific adenosine deaminase [Yersinia pseudotuberculosis
           YPIII]
 gi|169750031|gb|ACA67549.1| CMP/dCMP deaminase zinc-binding [Yersinia pseudotuberculosis YPIII]
          Length = 187

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 17/132 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57
           P    D  +M  AL  +            V  ++V    VIG G            HAE+
Sbjct: 20  PAEYSDEYWMRHALTLALRAQ--EEGEVPVGAVLVLGNKVIGEGWNRPIRDNDPTAHAEI 77

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL + G+  +      AT YVTLEPC        CA  ++   IRR+V   +D     +
Sbjct: 78  MALRQGGQAVQNYRLLDATLYVTLEPC------VMCAGAMVHSRIRRLVYGANDVKTGAA 131

Query: 113 GRGLQWLSQKGI 124
           G  +  L   G+
Sbjct: 132 GSLVDILRHPGM 143


>gi|296332941|ref|ZP_06875399.1| tRNA specific adenosine deaminase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305672716|ref|YP_003864387.1| tRNA specific adenosine deaminase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296149905|gb|EFG90796.1| tRNA specific adenosine deaminase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305410959|gb|ADM36077.1| tRNA specific adenosine deaminase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 161

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
           + D  +M  A++ ++           +  ++V +  +I R      T      HAE+  +
Sbjct: 2   TQDELYMKEAIKEAKKAE--EKGEVPIGAVLVVNDEIIARAHNLRETEQRSIAHAEMLVI 59

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA +        GAT YVTLEPC      P CA  ++   + +VV    DP    SG  
Sbjct: 60  DEACKALGTWRLEGATLYVTLEPC------PMCAGAVVLSRVEKVVFGAFDPKGGCSGTI 113

Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
           +  L       +  +V  ++E E    L ++ 
Sbjct: 114 MNLLQEERFNHQAEVVSGVLEEECGGMLSSFF 145


>gi|219849114|ref|YP_002463547.1| bifunctional deaminase-reductase domain-containing protein
           [Chloroflexus aggregans DSM 9485]
 gi|219543373|gb|ACL25111.1| bifunctional deaminase-reductase domain protein [Chloroflexus
           aggregans DSM 9485]
          Length = 289

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 87/244 (35%), Gaps = 35/244 (14%)

Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL------LRAQSDAI 193
             L    E+R  I     VS D  I     G       IS+N  H       +RA++DAI
Sbjct: 31  WRLPTIPERRPAIWTNFVVSHDGRIAFNQPGWNG-GNAISRNHRHDHWLMEVIRARADAI 89

Query: 194 LVGIGTVLA------------DDPELTCRLNGLQEHSPMR--IILDPHFKLSLDSKIIKT 239
           LVG  T+ A            + P  T +L   +E  P+   +IL     +   + +  T
Sbjct: 90  LVGTATLRAARRHRWAPGEVFNWPAFT-QLRAAEERPPLPALVILSASGDVPAAAAL--T 146

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAV 298
           +     +I T                 +      DL   +T L  + G+ +LL EGG   
Sbjct: 147 SPRDLFLITTAQGAEHARSRHPHLTCLVGTDGQLDLTAAMTTLRQQYGIRTLLSEGGGRT 206

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE---------KNFMCVRRDYFGSD 349
             S +  +L+D + L  S I++G    P+P   G +E              +       D
Sbjct: 207 YGSLLAHQLIDEVFLTISPIIVGNPAPPTPPRPGLVEGVAFAPQDPPRLRLISLRRV-DD 265

Query: 350 VCLE 353
           V  +
Sbjct: 266 VLFQ 269


>gi|45442315|ref|NP_993854.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108808356|ref|YP_652272.1| tRNA-specific adenosine deaminase [Yersinia pestis Antiqua]
 gi|108811379|ref|YP_647146.1| tRNA-specific adenosine deaminase [Yersinia pestis Nepal516]
 gi|145599538|ref|YP_001163614.1| tRNA-specific adenosine deaminase [Yersinia pestis Pestoides F]
 gi|149365378|ref|ZP_01887413.1| tRNA-specific adenosine deaminase [Yersinia pestis CA88-4125]
 gi|229838506|ref|ZP_04458665.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229895510|ref|ZP_04510681.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis Pestoides A]
 gi|229899076|ref|ZP_04514220.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229901629|ref|ZP_04516751.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis Nepal516]
 gi|45437179|gb|AAS62731.1| putative zinc-binding protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108775027|gb|ABG17546.1| tRNA-adenosine deaminase [Yersinia pestis Nepal516]
 gi|108780269|gb|ABG14327.1| tRNA-adenosine deaminase [Yersinia pestis Antiqua]
 gi|145211234|gb|ABP40641.1| tRNA-adenosine deaminase [Yersinia pestis Pestoides F]
 gi|149291791|gb|EDM41865.1| tRNA-specific adenosine deaminase [Yersinia pestis CA88-4125]
 gi|229681558|gb|EEO77652.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis Nepal516]
 gi|229688021|gb|EEO80093.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229694872|gb|EEO84919.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701316|gb|EEO89344.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis Pestoides A]
 gi|320016065|gb|ADV99636.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 187

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 17/132 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57
           P    D  +M  AL  +            V  ++V    VIG G            HAE+
Sbjct: 20  PAEYSDEYWMRHALTLALRAQ--EEGEVPVGAVLVLGNKVIGEGWNRPIRDNDPTAHAEI 77

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL + G+  +      AT YVTLEPC        CA  ++   IRR+V   +D     +
Sbjct: 78  MALRQGGQAVQNYRLLDATLYVTLEPC------VMCAGAMVHSRIRRLVYGANDVKTGAA 131

Query: 113 GRGLQWLSQKGI 124
           G  +  L   G+
Sbjct: 132 GSLVDILRHPGM 143


>gi|190574881|ref|YP_001972726.1| putative cytidine and deoxycytidylate deaminase [Stenotrophomonas
           maltophilia K279a]
 gi|190012803|emb|CAQ46432.1| putative cytidine and deoxycytidylate deaminase [Stenotrophomonas
           maltophilia K279a]
          Length = 174

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 51/131 (38%), Gaps = 17/131 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAE 56
           PV   D  +M  AL  +          P V  ++V  DG ++G G      ++    HAE
Sbjct: 8   PVHDADEHWMRHALALAERAQREFDEIP-VGAVLVGADGQLLGEGWNLNIASHDPSAHAE 66

Query: 57  VQALEE-----AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+       A     G+T YVTLEPC+       CA  I+   + R+V    DP    
Sbjct: 67  IVAMRAGGKLLANHRLLGSTLYVTLEPCAM------CAMAIVHARVSRLVYGASDPKTGA 120

Query: 112 SGRGLQWLSQK 122
            G     L   
Sbjct: 121 CGSVFDLLGDA 131


>gi|319775162|ref|YP_004137650.1| tRNA-specific adenosine deaminase [Haemophilus influenzae F3047]
 gi|329122920|ref|ZP_08251491.1| tRNA-specific adenosine deaminase [Haemophilus aegyptius ATCC
           11116]
 gi|317449753|emb|CBY85960.1| tRNA-specific adenosine deaminase [Haemophilus influenzae F3047]
 gi|327471851|gb|EGF17291.1| tRNA-specific adenosine deaminase [Haemophilus aegyptius ATCC
           11116]
          Length = 173

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 62/174 (35%), Gaps = 23/174 (13%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHAEVQ 58
           S FD + M  AL  +     L      V  ++V D G +IG G            HAE+ 
Sbjct: 8   SEFDEKMMRYALELADKAEAL--GEIPVGAVLVDDAGNIIGEGWNLSIVQSDPTAHAEII 65

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL    +  +      +T YVTLEPC        CA  I+   IRR+V    D      G
Sbjct: 66  ALRNGAKNIQNYRLLNSTLYVTLEPC------TMCAGAILHSRIRRLVFGASDYKTGAIG 119

Query: 114 RGLQ-----WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
                     ++    I   ++  E    L  +  ++ E++      +    D 
Sbjct: 120 SRFHFFDDYKMNHTLEITSGVLAEECSQKLSTFFQKRREEKKIEKALLKSLSDK 173


>gi|226952955|ref|ZP_03823419.1| deaminase [Acinetobacter sp. ATCC 27244]
 gi|294650537|ref|ZP_06727894.1| cytosine deaminase [Acinetobacter haemolyticus ATCC 19194]
 gi|226836276|gb|EEH68659.1| deaminase [Acinetobacter sp. ATCC 27244]
 gi|292823534|gb|EFF82380.1| cytosine deaminase [Acinetobacter haemolyticus ATCC 19194]
          Length = 174

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 64/175 (36%), Gaps = 23/175 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57
           P +  D  +M  A   +   +        V  +IV    +IG G  A         HAE+
Sbjct: 8   PDTFDDEYWMQFAYEQA--ALAAEQGEIPVGAVIVSQSKIIGAGYNAPILLSDPSAHAEI 65

Query: 58  QALEEAGEE------ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           QAL  A +          AT YVTLEPC        C   +I   I+RVV    +P    
Sbjct: 66  QALRMACQSIQNYRLPEDATLYVTLEPC------TMCVGALIHARIQRVVFATPEPKAGS 119

Query: 112 SGRGLQWL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
                Q L     + K +     M+++    L  +  ++  ++  I L    S D
Sbjct: 120 LVSARQLLDSGYYNHKFVFEHGCMQAKCSAQLSDFFKQRRNQKKQIRLSKTSSND 174


>gi|254361249|ref|ZP_04977392.1| cytosine deaminase [Mannheimia haemolytica PHL213]
 gi|153092745|gb|EDN73788.1| cytosine deaminase [Mannheimia haemolytica PHL213]
          Length = 174

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 51/131 (38%), Gaps = 18/131 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHA 55
           + +S  D  FM  AL  +            V  ++V K+  +IGRG            HA
Sbjct: 12  LQISEQDIAFMQYALDLADLAE--AKGEIPVGAVLVDKNQQIIGRGWNQTIQLCDPSAHA 69

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+QA+ +AG+          T YVTLEPC      P CA  I+   I+R+V    D    
Sbjct: 70  EMQAIRQAGQTLGNYRLLDCTLYVTLEPC------PMCAGAILHSRIKRLVFGASDYKTG 123

Query: 111 VSGRGLQWLSQ 121
             G        
Sbjct: 124 AVGSRYHLFED 134


>gi|161869845|ref|YP_001599014.1| cytidine and deoxycytidylate deaminase family protein [Neisseria
           meningitidis 053442]
 gi|161595398|gb|ABX73058.1| cytidine and deoxycytidylate deaminase family protein [Neisseria
           meningitidis 053442]
          Length = 239

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 60/156 (38%), Gaps = 22/156 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P       FM  ALR +            V  +IV DG +I               HAE+
Sbjct: 87  PSQEEMEHFMREALRQAEQSA--ADGEIPVGAVIVSDGKIIASAHNTCIADCNVSRHAEI 144

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+    +P    +
Sbjct: 145 NALAQAGREIQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGAAEPKTGAA 198

Query: 113 GRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLT 143
           G  +       L+    I   +++ E +  L  +  
Sbjct: 199 GSIVNLFADKRLNTHTAIRGGILQEECRAVLSRFFQ 234


>gi|89100955|ref|ZP_01173801.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus sp. NRRL B-14911]
 gi|89084326|gb|EAR63481.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Bacillus sp. NRRL B-14911]
          Length = 180

 Score = 88.4 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 67/175 (38%), Gaps = 22/175 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           M ++  D  +M  A+  ++   G     P +  ++V DG +I R             HAE
Sbjct: 6   MNITYNDDDYMKEAIEEAKKA-GELGEVP-IGAVVVLDGKIISRAHNLRESNQNAVAHAE 63

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+EEA           A  YVTLEPC+       C+  II   I+RVV    DP    
Sbjct: 64  LLAIEEACGMLGTWRLEDAALYVTLEPCAM------CSGAIILSRIKRVVYGAADPKGGC 117

Query: 112 SGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           +G  +  L       +  +   ++E E    L  +     E++     +     D
Sbjct: 118 AGTFMNLLQDERFNHQSEVSAGVLEEECGSLLTDFFRALRERKKEEKRRRKQLLD 172


>gi|315633684|ref|ZP_07888974.1| tRNA-specific adenosine deaminase [Aggregatibacter segnis ATCC
           33393]
 gi|315477726|gb|EFU68468.1| tRNA-specific adenosine deaminase [Aggregatibacter segnis ATCC
           33393]
          Length = 175

 Score = 88.4 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 59/154 (38%), Gaps = 23/154 (14%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHAEVQAL 60
            D +FM  AL  +     L      V  ++V  +G +IG G            HAE+ AL
Sbjct: 8   LDEQFMRHALMLADKAEAL--GEIPVGAVLVSEEGEIIGEGWNLSIIDSDPTAHAEIVAL 65

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            + G+  +      AT YVTLEPC        CA  I+   I+R+V    D      G  
Sbjct: 66  RQGGQRLQNYRLLNATLYVTLEPC------TMCAGAILHSRIKRLVFGAADYKTGAVGSR 119

Query: 116 LQ-----WLSQKGIIVDRMMESEGKIFLHAYLTR 144
                   ++    I   +++ E    L A+  +
Sbjct: 120 FHFFDDYKMNHAIEITGGVLQQECSEKLSAFFQK 153


>gi|87121678|ref|ZP_01077565.1| cytidine/deoxycytidylate deaminase family protein [Marinomonas sp.
           MED121]
 gi|86162929|gb|EAQ64207.1| cytidine/deoxycytidylate deaminase family protein [Marinomonas sp.
           MED121]
          Length = 162

 Score = 88.4 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 49/120 (40%), Gaps = 17/120 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEE 66
           M  AL  +      T     V  ++V D  +IG G  +         HAE+QA+ +A + 
Sbjct: 1   MERALVLADKAA--TEGEVPVGAILVLDNEIIGEGYNSPISTCDPTAHAEIQAIRDACKN 58

Query: 67  ARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                   AT YVTLEPCS       CA  I+   I RVV    +P   V     Q+  Q
Sbjct: 59  VANYRLPKATLYVTLEPCSM------CAGAIVHARIARVVYAATEPKSGVVESQNQFFEQ 112


>gi|300853298|ref|YP_003778282.1| tRNA-specific adenosine deaminase [Clostridium ljungdahlii DSM
           13528]
 gi|300433413|gb|ADK13180.1| tRNA-specific adenosine deaminase [Clostridium ljungdahlii DSM
           13528]
          Length = 145

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 59/146 (40%), Gaps = 21/146 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE 65
           FM  A+R ++  + L      V  +IVKD  +I               HAE+ A++ A E
Sbjct: 4   FMLEAIRQAKKGLKL--GEVPVGAVIVKDNEIISSCHNLKETVGIVTAHAEMLAIQNASE 61

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                   G + YVTLEPC      P CA  I++C I ++ +   DP +   G  +  L 
Sbjct: 62  ILSNWRLTGCSMYVTLEPC------PMCAGAILQCRINKLYIGTFDPTMGACGSVVNILQ 115

Query: 121 QKG----IIVDRMMESEGKIFLHAYL 142
            +     + +  M   +    L  + 
Sbjct: 116 NRRLNRWVDIQWMYNEQCSEMLEKFF 141


>gi|120554632|ref|YP_958983.1| CMP/dCMP deaminase, zinc-binding [Marinobacter aquaeolei VT8]
 gi|120324481|gb|ABM18796.1| tRNA-adenosine deaminase [Marinobacter aquaeolei VT8]
          Length = 167

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 52/132 (39%), Gaps = 18/132 (13%)

Query: 1   MPVSS-FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHA 55
           M  S   D  +M+ AL  +      +     V  ++V+DG  +G G     T      HA
Sbjct: 1   MSDSPKNDQYWMARALMLAERAA--SIGEVPVGAIVVRDGKELGVGYNAPITGCDPTAHA 58

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E++AL +A          GAT YVTLEPC        C   I+   I R+V    +P   
Sbjct: 59  EIRALRDASARVGNYRLTGATLYVTLEPC------TMCVGAIVHSRISRLVYGAREPKAG 112

Query: 111 VSGRGLQWLSQK 122
                 + L + 
Sbjct: 113 AVESARRTLDEA 124


>gi|30248454|ref|NP_840524.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Nitrosomonas europaea ATCC 19718]
 gi|30138340|emb|CAD84348.1| Cytidine and deoxycytidylate deaminase zinc-binding region
           [Nitrosomonas europaea ATCC 19718]
          Length = 167

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 22/155 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEV 57
           PV + D  FM  AL  +R   G     P V  ++V++  ++G G     T      HAE+
Sbjct: 9   PVQTEDEYFMRQALDLAR-VAGAAGEVP-VGAVMVRESRIVGCGHNCPVTTVDPTAHAEI 66

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           +AL +A          G T YVTLEPC        C   +    I R+V   +DP   V 
Sbjct: 67  RALRDAASRVGNYRLPGCTLYVTLEPC------VMCIGAMFHARITRLVYAANDPKTGVC 120

Query: 113 GRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
           G  L       L+   ++   ++  E    L  + 
Sbjct: 121 GSLLDLPADTRLNHHLMVSQGVLADEAGTLLKQFF 155


>gi|225023945|ref|ZP_03713137.1| hypothetical protein EIKCOROL_00812 [Eikenella corrodens ATCC
           23834]
 gi|224942970|gb|EEG24179.1| hypothetical protein EIKCOROL_00812 [Eikenella corrodens ATCC
           23834]
          Length = 254

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 64/150 (42%), Gaps = 22/150 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
             +M  AL+ +     L +    V  ++V+ G +IGRG     T +  C HAE+ AL EA
Sbjct: 108 EHWMQQALQLAEQA--LAAGEVPVGAVVVRRGEIIGRGANACVTEHSVCRHAEIAALTEA 165

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G         G   YVTLEPCS       CA  I++  IRR++    +P    +G  L  
Sbjct: 166 GRRLGNYRLDGCDLYVTLEPCSM------CAGAIMQSRIRRLIYAAAEPKTGAAGSMLDL 219

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYLT 143
                L+    +   ++ +E    L  +  
Sbjct: 220 FANKQLNPHTAVQGGVLAAESAQLLQRFFQ 249


>gi|149237721|ref|XP_001524737.1| DRAP deaminase [Lodderomyces elongisporus NRRL YB-4239]
 gi|146451334|gb|EDK45590.1| DRAP deaminase [Lodderomyces elongisporus NRRL YB-4239]
          Length = 622

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/140 (31%), Positives = 59/140 (42%), Gaps = 12/140 (8%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEE--AG 64
            ++M  AL  +R   G T T  +V C++V DG VI  G +    G  HAE  ALE+  A 
Sbjct: 456 RKYMEMALDEARK-CGETQTQFNVGCVLVLDGEVISTGHSRELEGNTHAEQCALEKYFAK 514

Query: 65  EE-----ARGATAYVTLEPCS-HYGRSPPCAQFIIEC-GIRRVVVCVDDPDVRVSGR-GL 116
                    G   Y T+EPCS     + PC   I+    I    V V +PDV V      
Sbjct: 515 NGGIRDVPLGTELYTTMEPCSLRLSGNLPCVDRILALPNITACFVGVMEPDVFVKNNLSY 574

Query: 117 QWLSQKGIIVDRMMESEGKI 136
           + L   GI    +   E + 
Sbjct: 575 KKLKDAGIEYIHIPGYEEQA 594


>gi|213403097|ref|XP_002172321.1| diaminohydroxyphosphoribosylamino-pyrimidine deaminase
           [Schizosaccharomyces japonicus yFS275]
 gi|212000368|gb|EEB06028.1| diaminohydroxyphosphoribosylamino-pyrimidine deaminase
           [Schizosaccharomyces japonicus yFS275]
          Length = 147

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 8/127 (6%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQAL-----EE 62
           +++  AL  ++     T T   V  +IV++G V+  G +    G  HAE  A+      +
Sbjct: 4   KYLRLALDEAKK-CNPTDTAFCVGSVIVENGQVVSTGYSRELPGNTHAEESAILKLLQRD 62

Query: 63  AGEEARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
              +   +  Y T+EPCS     + PC Q II     +VV+   +P   V   G++ L  
Sbjct: 63  PKHDFTRSVIYSTMEPCSKRLSGNVPCTQHIIANKFHKVVLGCREPTTFVVCEGVRQLQA 122

Query: 122 KGIIVDR 128
            GIIV+ 
Sbjct: 123 AGIIVEE 129


>gi|307245435|ref|ZP_07527523.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307254389|ref|ZP_07536227.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258848|ref|ZP_07540580.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306853776|gb|EFM85993.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862688|gb|EFM94644.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867199|gb|EFM99055.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 196

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 49/131 (37%), Gaps = 18/131 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHA 55
           + +S  D  FM  AL  +     +      V  ++V  +G +IG G            HA
Sbjct: 34  LTISEQDIHFMRYALELADRAEAI--GEIPVGAVLVDQEGNIIGEGWNQVIQLSDPSAHA 91

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+ +AG+  R       T Y TLEPC        CA  I+   +RR+V    D    
Sbjct: 92  EMLAIRQAGKVQRNYRLLDCTLYATLEPC------TMCAGAILHSRLRRLVFGASDYKTG 145

Query: 111 VSGRGLQWLSQ 121
             G        
Sbjct: 146 AIGSRFHLFED 156


>gi|300113226|ref|YP_003759801.1| CMP/dCMP deaminase zinc-binding protein [Nitrosococcus watsonii
           C-113]
 gi|299539163|gb|ADJ27480.1| CMP/dCMP deaminase zinc-binding protein [Nitrosococcus watsonii
           C-113]
          Length = 188

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 17/127 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEV 57
           P    D  +M  AL  +R+    T   P V  ++V++  ++G G      +     HAE+
Sbjct: 38  PPGEKDIPWMYHALALARYAE-ETGEVP-VGAVVVQEDEIVGEGWNCPINSRDPTAHAEI 95

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           QA+  A ++       G T YVTLEPC+       CA  II+  IRRVV    DP     
Sbjct: 96  QAIRAASQQLGNYRLVGTTLYVTLEPCAM------CAGAIIQARIRRVVFGAFDPKGGAV 149

Query: 113 GRGLQWL 119
           G  L  L
Sbjct: 150 GSALSIL 156


>gi|163119172|ref|YP_077304.2| putative cytidine/deoxycytidylate deaminase, zinc-binding region
           YaaJ [Bacillus licheniformis ATCC 14580]
 gi|145902675|gb|AAU21666.2| putative Cytidine/deoxycytidylate deaminase, zinc-binding region
           YaaJ [Bacillus licheniformis ATCC 14580]
          Length = 196

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 60/158 (37%), Gaps = 23/158 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M ++  D  +M  A+  +R           +  ++V DG +I R      T      HAE
Sbjct: 35  MRMT-QDEFYMKEAVNEARKAE--EKGEVPIGAVLVLDGEIIARAHNLRETEQRSVAHAE 91

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +  +EEA           A  YVTLEPC      P CA   +   I +VV    DP    
Sbjct: 92  MLVIEEACRKLGTWRLERAVLYVTLEPC------PMCAGAAVLSRIDKVVFGASDPKGGC 145

Query: 112 SGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144
           +G  +  L       +  +V  +ME E    L  +  +
Sbjct: 146 AGTLMNLLQEERFNHQAEVVSGVMEEECGRMLSDFFRK 183


>gi|253702219|ref|YP_003023408.1| CMP/dCMP deaminase zinc-binding [Geobacter sp. M21]
 gi|251777069|gb|ACT19650.1| CMP/dCMP deaminase zinc-binding protein [Geobacter sp. M21]
          Length = 166

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 60/154 (38%), Gaps = 22/154 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
           +   D  +M  A+  +R    +      +  ++VKDG+VI RG            HAE+ 
Sbjct: 1   MHKDDHYWMGQAIAQARRAEAI--GEVPIGAVVVKDGVVIARGHNLRESKQDPAAHAEMI 58

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+ +A ++       GAT YVTLEPC        C   +I   + RVV    DP    +G
Sbjct: 59  AIRKAAKKLASWRLTGATLYVTLEPC------TMCMGAVILSRLERVVFGSYDPKGGAAG 112

Query: 114 RGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
                     L+   I+   +   E    L  + 
Sbjct: 113 SLYDLSDDKRLNHSVILTPGVRGEETSSMLSGFF 146


>gi|256848137|ref|ZP_05553581.1| tRNA-adenosine deaminase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715197|gb|EEU30174.1| tRNA-adenosine deaminase [Lactobacillus coleohominis 101-4-CHN]
          Length = 169

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 64/175 (36%), Gaps = 22/175 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           MP  +  A FM AA+  +     L      +  +IVKDG +IG G            HAE
Sbjct: 3   MPNYTEPADFMRAAINEAHQAELL--GEVPIGAVIVKDGQIIGAGHNMREKYQQSIYHAE 60

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ EA +            YVTLEPC        C+  II   +R+V     DP    
Sbjct: 61  ILAIMEACDALHSWRLEDCDLYVTLEPCIM------CSGAIIHSRLRQVYYAAPDPKAGA 114

Query: 112 SGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
                       L+ +  +   +++ E    L  +     +++     K    QD
Sbjct: 115 VNSLYTLLNDSRLNHQVTVHQGLLQDECSQMLKHFFREIRQRKKLAKRKRNRGQD 169


>gi|85059758|ref|YP_455460.1| tRNA-specific adenosine deaminase [Sodalis glossinidius str.
           'morsitans']
 gi|84780278|dbj|BAE75055.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 169

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 53/133 (39%), Gaps = 17/133 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
           M     D  +M  AL  +            V  ++V +G +IG G     G      HAE
Sbjct: 1   MSERCSDEVWMRHALMLA--GRAEAEGEVPVGAVLVLNGAIIGEGWNRSIGHHDPTAHAE 58

Query: 57  VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL + G++A       AT YVTLEPC        CA  +I   I R+V    D     
Sbjct: 59  IMALRQGGQQAGNYRLLKATLYVTLEPC------VMCAGAMIHARIGRLVFGARDEKTGA 112

Query: 112 SGRGLQWLSQKGI 124
           +G  +  L   G+
Sbjct: 113 AGSLMDVLGHPGM 125


>gi|163749537|ref|ZP_02156784.1| cytidine/deoxycytidylate deaminase family protein [Shewanella
           benthica KT99]
 gi|161330647|gb|EDQ01584.1| cytidine/deoxycytidylate deaminase family protein [Shewanella
           benthica KT99]
          Length = 189

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 61/154 (39%), Gaps = 22/154 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
           + D  FMS A+  +R    +      V  +++KDG ++  G     G      HAE+Q L
Sbjct: 20  ALDKHFMSMAMEMARKAEAV--GEVPVGAVLIKDGELVSAGFNYCIGLHDPSAHAEMQCL 77

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +AG+          T YVTLEPC+       CA  ++   I R+V    D     +G  
Sbjct: 78  RQAGKVIENYRLLNTTLYVTLEPCAM------CAGAMVHSRIERLVFGAKDDKTGAAGTV 131

Query: 116 LQWLSQKGI-----IVDRMMESEGKIFLHAYLTR 144
           +  +          + D ++  E    L  +  R
Sbjct: 132 IDLVRHPAFNHQLQVSDGVLADECSAQLSQFFRR 165


>gi|50955356|ref|YP_062644.1| hypothetical protein Lxx17960 [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951838|gb|AAT89539.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Leifsonia
           xyli subsp. xyli str. CTCB07]
          Length = 248

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 71/216 (32%), Gaps = 11/216 (5%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA-------- 202
            + +    S D         S  ++    K    +LR   D ++VG GT+ A        
Sbjct: 29  WLRVNFVASLDG-AATEQGLSGGLSDDADKRVFDILRRLCDVVVVGAGTIRAEGYGAMRV 87

Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF-R 261
           D      R        P+  I+     L     I + A   P+++ +E        A   
Sbjct: 88  DAASQRARRADGLTEHPVFAIVSAVLDLDPAGPIFREAPERPLVLTSERSRAGAREALAE 147

Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
             ++ +      + + L+  L  RG+  +  EGG  +    +   +VD + L  S  +  
Sbjct: 148 VADVVVCGAQRVEPRLLVRELAARGLRRIHCEGGPRLFGDLLAGGVVDELCLTLSPRLEA 207

Query: 322 EGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIG 356
                  +    +E   M +       D + L Y+ 
Sbjct: 208 GSATRIAVGAAPIEPVGMRLAHVLHSEDTLLLRYVR 243


>gi|254776005|ref|ZP_05217521.1| hypothetical protein MaviaA2_15235 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 254

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 77/234 (32%), Gaps = 33/234 (14%)

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + E +       Y        + +      S D     A   S  + G   ++  +LLR 
Sbjct: 14  VREVDDGELPGLYDYPDGHAGTWVRANFIASVDGG-ATADGSSGAMGGPGDRSVFNLLRE 72

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHS-----------------PMRIILDPHFKLS 231
            +D I+VG GTV         R+ G                      P   I+     L+
Sbjct: 73  LADVIVVGAGTV---------RIEGYSGAQLGVAQRQQRQARGQSEVPPPGIVTKSGHLN 123

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL-----LTILVGRG 286
            D  +     + P+++                   ++ C   D +++     L +L  RG
Sbjct: 124 RDMAVFTRTEVPPLVLTCAAAADQTRRLLSGL-CEVLDCSAGDPERVDEATMLALLGERG 182

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
           +  +L EGG  + +S +  +L+D + L  +  ++G          G L     C
Sbjct: 183 MRRILTEGGPTLLNSLLERQLLDELCLTIAPYLVGGHARRIATGPGQLLTRMRC 236


>gi|256823046|ref|YP_003147009.1| CMP/dCMP deaminase zinc-binding [Kangiella koreensis DSM 16069]
 gi|256796585|gb|ACV27241.1| CMP/dCMP deaminase zinc-binding [Kangiella koreensis DSM 16069]
          Length = 159

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 22/154 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
            + FD   M  A   +   +        V  ++ KDG +   G       +    HAE+ 
Sbjct: 4   FTDFDQHCMQRAFDLA--SIAEEKGEVPVGAVLAKDGEIKTEGFNQPIFNHDPTAHAEMV 61

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            L  AG++         T YVTLEPC+       CA  ++   + RVV    DP    +G
Sbjct: 62  VLRAAGQKLDNYRLVDTTLYVTLEPCAM------CAMAMVHARVSRVVFATTDPRTGAAG 115

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
             L  L       + ++   +++ +    L  + 
Sbjct: 116 SVLNILQNPSFNHQCVVESGLLQEDCSEQLKRFF 149


>gi|145298514|ref|YP_001141355.1| cytosine/adenosine deaminase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851286|gb|ABO89607.1| cytosine/adenosine deaminase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 199

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 64/173 (36%), Gaps = 22/173 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQ 58
            +  D R+M  A+  +    G+      V  ++V    V+G G    ++ +  C HAE+ 
Sbjct: 32  QAEQDERWMRHAMALAARAEGI--GEIPVGAVLVLGDEVVGEGGNRSISEHDACAHAEIM 89

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+  AG             YVTLEPC        CA  +I   ++RVV    D     +G
Sbjct: 90  AIRAAGARLENYRLIDTVLYVTLEPCCM------CAGALIHSRVKRVVFGARDLKTGAAG 143

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
                L       +  +   ++       L A+  R+  ++      +  + D
Sbjct: 144 SVFDILQDPRHNHRVSLTGGVLADACSAQLSAFFKRRRAEKKAARQALQQATD 196


>gi|298368702|ref|ZP_06980020.1| tRNA-specific adenosine deaminase [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282705|gb|EFI24192.1| tRNA-specific adenosine deaminase [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 241

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 63/163 (38%), Gaps = 22/163 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57
           P  S    FM  AL  +       +    V   +VK+G VI         +     HAE+
Sbjct: 87  PRPSEMEIFMRIALEQAVQSA--AAGEIPVGAAVVKNGSVIAAAHNTCIQSRDVSRHAEI 144

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL +AG         G   YVTLEPC+       CA  +I+  + RV+   D+P    +
Sbjct: 145 SALAQAGAVLGNYRLDGCDVYVTLEPCAM------CASALIQARVARVIFGADEPKTGAA 198

Query: 113 GRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRS 150
           G  +   +  GI     +   +++ E +  L  +   +   + 
Sbjct: 199 GSIIDLFAAHGINKHTAVTGGILKKECRTLLQQFFREKRRFQP 241


>gi|297737907|emb|CBI27108.3| unnamed protein product [Vitis vinifera]
          Length = 1151

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 63/184 (34%), Gaps = 18/184 (9%)

Query: 6    FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
             D  FM  AL  ++         P V  ++V+ G +I RG            HAE+  + 
Sbjct: 949  IDEMFMREALLEAKKAA-NAWEVP-VGAVLVQHGKIIARGCNRVEELRDSTAHAEMICIR 1006

Query: 62   EAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            EA    R       T YVTLEPC      P CA  I++  I  +V    +  +   G  +
Sbjct: 1007 EASNLLRTWRLSETTLYVTLEPC------PMCAGAILQARIDTLVWGAPNKLLGADGSWI 1060

Query: 117  QWL-SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
            +   +         +  + +   H +  +   +R  +  + + +      +         
Sbjct: 1061 RLFPNGGEGGSGSELTDKTQAPAHPFHPKMTIRRGVLASECSDAMQQFFQLRRKQKEKKP 1120

Query: 176  GFIS 179
               +
Sbjct: 1121 DMPA 1124


>gi|312862370|ref|ZP_07722613.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Streptococcus vestibularis F0396]
 gi|311102013|gb|EFQ60213.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Streptococcus vestibularis F0396]
          Length = 172

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 58/149 (38%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FMS AL+ ++  +        + C+IVKD  ++GRG  A         HAEV A++EA
Sbjct: 10  EFFMSEALKEAQKSLDKAE--IPIGCVIVKDREIVGRGHNAREELNQAIMHAEVMAIQEA 67

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I +V+    +     +G     
Sbjct: 68  NRTVGNWRLLDCTLFVTIEPC------VMCSGAIGLARIPKVIYGACNQKFGGAGSLYDI 121

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYL 142
           L       +  +   +ME E    +  + 
Sbjct: 122 LRDERLNHRVEVETGVMEEECAKIMQDFF 150


>gi|260913765|ref|ZP_05920241.1| tRNA-specific adenosine deaminase [Pasteurella dagmatis ATCC 43325]
 gi|260632304|gb|EEX50479.1| tRNA-specific adenosine deaminase [Pasteurella dagmatis ATCC 43325]
          Length = 170

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 23/160 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHAEVQ 58
           S  D ++M  AL  +     L      V  ++V  +G V+G G            HAE+ 
Sbjct: 3   SDLDEKWMRYALELADKAEQL--GEIPVGAVLVDEEGNVLGEGWNLSIIESDPTAHAEIV 60

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL + G+  +       T YVTLEPC        CA  I+   I+R+V    D      G
Sbjct: 61  ALRQGGKTLQNYRLVNTTLYVTLEPC------TMCAGAILHSRIKRLVFGASDYKTGAVG 114

Query: 114 RGLQ-----WLSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
                     ++    I   +++ E    L  +  ++ ++
Sbjct: 115 SRFHFFDDYKMNHTVEITAGVLQDECSQKLSVFFQKRRQQ 154


>gi|225423812|ref|XP_002277950.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1358

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 63/184 (34%), Gaps = 18/184 (9%)

Query: 6    FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
             D  FM  AL  ++         P V  ++V+ G +I RG            HAE+  + 
Sbjct: 1156 IDEMFMREALLEAKKAA-NAWEVP-VGAVLVQHGKIIARGCNRVEELRDSTAHAEMICIR 1213

Query: 62   EAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            EA    R       T YVTLEPC      P CA  I++  I  +V    +  +   G  +
Sbjct: 1214 EASNLLRTWRLSETTLYVTLEPC------PMCAGAILQARIDTLVWGAPNKLLGADGSWI 1267

Query: 117  QWL-SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
            +   +         +  + +   H +  +   +R  +  + + +      +         
Sbjct: 1268 RLFPNGGEGGSGSELTDKTQAPAHPFHPKMTIRRGVLASECSDAMQQFFQLRRKQKEKKP 1327

Query: 176  GFIS 179
               +
Sbjct: 1328 DMPA 1331


>gi|194366203|ref|YP_002028813.1| CMP/dCMP deaminase zinc-binding [Stenotrophomonas maltophilia
           R551-3]
 gi|194349007|gb|ACF52130.1| CMP/dCMP deaminase zinc-binding [Stenotrophomonas maltophilia
           R551-3]
          Length = 174

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 17/128 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAE 56
           PV   D  +M  AL  +          P V  ++V  DG ++G G      ++    HAE
Sbjct: 8   PVHDTDEHWMRHALALAERAQREFDEIP-VGAVLVSADGQLLGEGWNLNIASHDPSAHAE 66

Query: 57  VQALEE-----AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+       A     G+T YVTLEPC+       CA  I+   + R+V    DP    
Sbjct: 67  IVAMRSGGKLLANHRLLGSTLYVTLEPCAM------CAMAIVHARVARLVYGASDPKTGA 120

Query: 112 SGRGLQWL 119
            G     L
Sbjct: 121 CGSVFDLL 128


>gi|325134098|gb|EGC56751.1| tRNA-specific adenosine deaminase [Neisseria meningitidis M13399]
 gi|325206234|gb|ADZ01687.1| tRNA-specific adenosine deaminase [Neisseria meningitidis
           M04-240196]
          Length = 163

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 61/156 (39%), Gaps = 22/156 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P       FM  ALR +            V  +IV DG +I               HAE+
Sbjct: 11  PPQEEMEHFMREALRQAEQSA--ADGEIPVGAVIVSDGKIIASAHNTCIADCNVSCHAEI 68

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+    +P    +
Sbjct: 69  NALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGAAEPKTGAA 122

Query: 113 GRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLT 143
           G  +       L+    I   +++ E +  L+ +  
Sbjct: 123 GSIVNLFADKRLNTHTAIRGGILQEECRAVLNRFFQ 158


>gi|49482788|ref|YP_040012.1| deaminase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257424672|ref|ZP_05601099.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427340|ref|ZP_05603739.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257429977|ref|ZP_05606361.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432678|ref|ZP_05609038.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435582|ref|ZP_05611630.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus M876]
 gi|282903146|ref|ZP_06311037.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
           aureus subsp. aureus C160]
 gi|282904936|ref|ZP_06312794.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282907886|ref|ZP_06315721.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910199|ref|ZP_06318003.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282913391|ref|ZP_06321180.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
           aureus subsp. aureus M899]
 gi|282923308|ref|ZP_06330988.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus C101]
 gi|283957356|ref|ZP_06374809.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|293500437|ref|ZP_06666288.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293509382|ref|ZP_06668093.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus M809]
 gi|293523969|ref|ZP_06670656.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
           aureus subsp. aureus M1015]
 gi|295427097|ref|ZP_06819733.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297590551|ref|ZP_06949190.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
           aureus MN8]
 gi|49240917|emb|CAG39584.1| putative deaminase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257272242|gb|EEV04365.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275533|gb|EEV07006.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257279174|gb|EEV09775.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257282093|gb|EEV12228.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284773|gb|EEV14892.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus M876]
 gi|282314176|gb|EFB44566.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus C101]
 gi|282322423|gb|EFB52745.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
           aureus subsp. aureus M899]
 gi|282325591|gb|EFB55899.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282328270|gb|EFB58548.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331761|gb|EFB61272.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282596101|gb|EFC01062.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
           aureus subsp. aureus C160]
 gi|283790807|gb|EFC29622.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|290920932|gb|EFD97993.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291095442|gb|EFE25703.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467479|gb|EFF09994.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus M809]
 gi|295128885|gb|EFG58515.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297576850|gb|EFH95565.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
           aureus MN8]
 gi|312439022|gb|ADQ78093.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|315193922|gb|EFU24316.1| putative deaminase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 156

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 57/150 (38%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  FM+ A+  ++    L      +  +I KD  VI R      T      HAE  A+E 
Sbjct: 4   DIYFMTLAIEEAKKAAQL--GEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIER 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +          T YVTLEPC        CA  I+   I RVV   DDP    SG  + 
Sbjct: 62  AAKVLGSWRLEDCTLYVTLEPC------VMCAGTIVMSRIPRVVYGADDPKGGCSGSLMN 115

Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYL 142
            L       + I+   +++      L  + 
Sbjct: 116 LLQQSNFNHRAIVDKGVLKEACSTLLTTFF 145


>gi|15601943|ref|NP_245015.1| hypothetical protein PM0078 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720287|gb|AAK02162.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 166

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 64/162 (39%), Gaps = 23/162 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHAEV 57
            S  D ++M  ALR +     L      V  ++V + G ++G G            HAE+
Sbjct: 2   QSDMDEKWMRHALRLADKAEQL--GEIPVGAVLVDEQGNLLGEGWNLSISESDPTAHAEI 59

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL + G+  +       T YVTLEPC        CA  I+   I+R+V    D      
Sbjct: 60  VALRQGGQRLQNYRLLNTTLYVTLEPC------TMCAGAILHSRIKRLVFGASDYKTGAV 113

Query: 113 GRGLQ-----WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           G          ++    I   +++ E    + A+  ++ E++
Sbjct: 114 GSRFHFFDDYKMNHAIEITAGVLQEECSQKISAFFQKRREQQ 155


>gi|262370390|ref|ZP_06063716.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262314732|gb|EEY95773.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 166

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 60/160 (37%), Gaps = 26/160 (16%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
            D+ +M  AL  +   +  +     V  +IV    +IG G  A         HAEVQAL 
Sbjct: 7   IDSEWMQLALEQA--AIAASKGEVPVGAVIVSQNKIIGSGFNAPITLNDPTAHAEVQALR 64

Query: 62  EAGEEAR------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +A +  +       A  YVTLEPC        C   ++   + +VV    +P        
Sbjct: 65  DACQNTQNYRLPDDAVMYVTLEPC------TMCVGALVHARVSKVVFGATEPKAGSLIS- 117

Query: 116 LQWLSQKG-------IIVDRMMESEGKIFLHAYLTRQVEK 148
            + L + G       +    + E   +   H +  R+ +K
Sbjct: 118 ARKLFETGYYNHQFLVESGCLHEQCSQQLSHFFKMRREQK 157


>gi|153001509|ref|YP_001367190.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica OS185]
 gi|151366127|gb|ABS09127.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica OS185]
          Length = 174

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 54/153 (35%), Gaps = 22/153 (14%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
            D  +M  A+  +            V  ++VKDG+ I  G       +    HAE+  L 
Sbjct: 11  LDEHWMQVAMLMAEKAE--AEGEVPVGAVLVKDGLQIATGYNLSISQHDPSAHAEILCLR 68

Query: 62  EAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           EAG          AT YVTLEPC+       CA  ++   I RVV    D     +G  +
Sbjct: 69  EAGRLVENYRLLDATLYVTLEPCAM------CAGAMVHSRIARVVFGARDEKTGAAGTVV 122

Query: 117 QWLSQKGI-----IVDRMMESEGKIFLHAYLTR 144
             L          +   ++       L  +  R
Sbjct: 123 NLLQHPAFNHQVEVTSGVLADACSAQLSRFFKR 155


>gi|225016548|ref|ZP_03705740.1| hypothetical protein CLOSTMETH_00455 [Clostridium methylpentosum
           DSM 5476]
 gi|224950657|gb|EEG31866.1| hypothetical protein CLOSTMETH_00455 [Clostridium methylpentosum
           DSM 5476]
          Length = 254

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 61/166 (36%), Gaps = 21/166 (12%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA--- 63
           M  AL  +     L      V  ++V+ G V+ +      T      HAE+ A+++A   
Sbjct: 1   MRLALEQAARAAEL--GEVPVGAVLVRGGEVVAQAYNRRETDKNALAHAELLAIDQACRA 58

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW--- 118
             G    GAT YVTLEPC      P C   II   I  VV    D      G  +     
Sbjct: 59  LGGWRLFGATLYVTLEPC------PMCTGAIINARIDHVVYGAKDQKAGSCGSVIDLTEY 112

Query: 119 -LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163
             + K  +   ++E E    L  +  +  +K+         + + +
Sbjct: 113 PYNHKPQLTGGVLEQECAGMLSQFFQQLRQKKKQQADAAKNNGNPI 158


>gi|16272843|ref|NP_439066.1| hypothetical protein HI0906 [Haemophilus influenzae Rd KW20]
 gi|260579996|ref|ZP_05847826.1| ComE operon protein 2 [Haemophilus influenzae RdAW]
 gi|1175980|sp|P44931|TADA_HAEIN RecName: Full=tRNA-specific adenosine deaminase
 gi|1573925|gb|AAC22565.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|260093280|gb|EEW77213.1| ComE operon protein 2 [Haemophilus influenzae RdAW]
          Length = 173

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 61/174 (35%), Gaps = 23/174 (13%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVT----AYGGCPHAEVQ 58
           S FD + M  AL  +     L      V  ++V D   +IG G            HAE+ 
Sbjct: 8   SEFDEKMMRYALELADKAEAL--GEIPVGAVLVDDARNIIGEGWNLSIVQSDPTAHAEII 65

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL    +  +      +T YVTLEPC        CA  I+   I+R+V    D      G
Sbjct: 66  ALRNGAKNIQNYRLLNSTLYVTLEPC------TMCAGAILHSRIKRLVFGASDYKTGAIG 119

Query: 114 RGLQ-----WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
                     ++    +   ++  E    L  +  ++ E++      +    D 
Sbjct: 120 SRFHFFDDYKMNHTLEVTSGVLAEECSQKLSTFFQKRREEKKIEKALLKSLSDK 173


>gi|330808801|ref|YP_004353263.1| hypothetical protein PSEBR_a2016 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376909|gb|AEA68259.1| conserved hypothetical protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 243

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 84/202 (41%), Gaps = 21/202 (10%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS----DAILVGIGTVLADD 204
              I   +  S D  +  +   S+P          H  R  +    D  ++G  T+ A D
Sbjct: 2   PPRIICHMISSVDGRLVSSRWTSLPNGDSEQTISNHYERIAARLGGDGFIIGRKTMEAFD 61

Query: 205 ------PELTCRLNGLQEHS-------PMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251
                 P +     GL++H+       P+ I++DP  KL   +  I        I+    
Sbjct: 62  GISSRPPFVGEHSGGLRDHNIAHEPGDPVAIVIDPSGKLHYQTNTIDGGHRIISILGDSV 121

Query: 252 DDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLV 308
            D  L  A R + I+ ++      +LK+ L +L  R G+ +LL+EGG  +  +F+ + L+
Sbjct: 122 SDAYLQ-ALRNQGISYLFAGPHCENLKQALAMLGARFGLKTLLLEGGGVINGTFLKAGLI 180

Query: 309 DSIILYRSQIVIGEGGIPSPLE 330
           D I L     + G  G+PS  E
Sbjct: 181 DEISLLIYPGIDGLSGVPSIFE 202


>gi|183982058|ref|YP_001850349.1| bifunctional enzyme riboflavin biosynthesis protein RibD
           [Mycobacterium marinum M]
 gi|183175384|gb|ACC40494.1| bifunctional enzyme riboflavin biosynthesis protein RibD
           [Mycobacterium marinum M]
          Length = 260

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 75/229 (32%), Gaps = 19/229 (8%)

Query: 107 PDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM 166
           PD          L+  G       E         Y        + +      S D     
Sbjct: 2   PDPTSGRSADAQLTLLGTDRQLTDED----LPEFYGYPAKLSGTWLRANFITSLDGG-AT 56

Query: 167 AGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD---PELTC-----RLNGLQEHS 218
            G  S  + G   +    LLR  +D ILVG GTV  +     +L       R    Q   
Sbjct: 57  VGGTSGGLAGPGDRAVFVLLRELADVILVGAGTVRIEGYSGAQLGVAERQQRQARGQSEV 116

Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK- 277
           P   I     +L  D  +     + P+++                   ++ C  +D  + 
Sbjct: 117 PQLAIATNSGQLDRDLPVFTRTEVPPLVLTAAAAVYDTRRRLTGL-AEVVDCSGKDPHRV 175

Query: 278 ----LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
               LL  L GRG+  +L EGG  +  S I   L+D + L  + +V+G 
Sbjct: 176 DEGLLLARLAGRGMRRILTEGGPTLFGSLIEQDLLDELCLTIAPVVVGG 224


>gi|147676360|ref|YP_001210575.1| cytosine/adenosine deaminases [Pelotomaculum thermopropionicum SI]
 gi|146272457|dbj|BAF58206.1| cytosine/adenosine deaminases [Pelotomaculum thermopropionicum SI]
          Length = 156

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 22/147 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA-- 63
           +M  AL  ++   GL      V  ++V+DG +IGRG     T      HAE+ A+ EA  
Sbjct: 9   YMREALAEAKKAYGL--GEVPVGAVVVRDGEIIGRGHNLRETLKDSTAHAEILAMREAAR 66

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ--- 117
                   G   Y T+EPC+       CA  II+  +  +V    DP    +G  +    
Sbjct: 67  IVGDWRLNGTVLYSTIEPCAM------CAGAIIQFRVATLVYGAADPKAGAAGSVIDVIG 120

Query: 118 --WLSQKGIIVDRMMESEGKIFLHAYL 142
               + +  +V  ++E E +  +  + 
Sbjct: 121 QPRFNHRVEVVSGVLEEECREIIQKFF 147


>gi|319946112|ref|ZP_08020360.1| tRNA-specific adenosine deaminase [Streptococcus australis ATCC
           700641]
 gi|319747758|gb|EFW00004.1| tRNA-specific adenosine deaminase [Streptococcus australis ATCC
           700641]
          Length = 170

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ +   + L      + C+IVKDG +IGRG  A         HAEV A+EEA
Sbjct: 10  EAFMREALKEAE--IALAHEEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEVMAIEEA 67

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            ++ +       T +VT+EPC        C+  I    I +V+    +     +G     
Sbjct: 68  NQKEKSWRLLDTTLFVTIEPC------VMCSGAIGLARIPQVIYGATNQKFGGAGSLYDI 121

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   ++E+E    +  + 
Sbjct: 122 LTDERLNHRVEVETGILEAECAAIMQTFF 150


>gi|253689423|ref|YP_003018613.1| CMP/dCMP deaminase zinc-binding [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756001|gb|ACT14077.1| CMP/dCMP deaminase zinc-binding [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 165

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 57/152 (37%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
           S D  +M  AL  ++           V  ++V D   IG G     G      HAE+ AL
Sbjct: 2   SNDEYWMRYALTLAQRAQ--DEGEVPVGAVLVLDNEAIGEGWNRPIGHHDPTAHAEIMAL 59

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            + G+  +       T YVTLEPC        CA  +I   I R+V    D     +G  
Sbjct: 60  RQGGQVLQNYRLLDTTLYVTLEPCIM------CAGAMIHSRIGRLVYGASDEKTGAAGSL 113

Query: 116 LQWLSQKG-----IIVDRMMESEGKIFLHAYL 142
           +  L   G     +I   ++  E    L A+ 
Sbjct: 114 VDILRHPGMNHQIVIESGILAEECSATLSAFF 145


>gi|33152629|ref|NP_873982.1| hypothetical protein HD1591 [Haemophilus ducreyi 35000HP]
 gi|33148853|gb|AAP96371.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
          Length = 183

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 53/156 (33%), Gaps = 23/156 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGG----CPHAEVQ 58
           S+ D + M  AL  ++     T     V  ++V   G +IG G            HAE+ 
Sbjct: 24  SAQDIQLMQYALTLAKRAE--TMGEIPVGAVLVDSKGNIIGEGWNQVIALSDPSAHAEIL 81

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+ +A    +       T YVTLEPC        CA  I+   + R+V    D      G
Sbjct: 82  AIRQASHRLQNYRLLDCTLYVTLEPC------TMCAGAILHSRLSRLVFGASDYKTGAIG 135

Query: 114 RGLQWLSQKG-----IIVDRMMESEGKIFLHAYLTR 144
                           +   +++      +  +  R
Sbjct: 136 SRFHLFEDYKMNHLLTVQGGVLKEACSKQISEFFQR 171


>gi|226366259|ref|YP_002784042.1| hypothetical protein ROP_68500 [Rhodococcus opacus B4]
 gi|226244749|dbj|BAH55097.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 262

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 69/191 (36%), Gaps = 15/191 (7%)

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           Y       R  I +    S D  + +    S  +           LR  +D +LVG GTV
Sbjct: 33  YAYPAETPRPWIRVNFVSSIDGAVSV-DGVSGALGTPADALVFETLRELADVVLVGAGTV 91

Query: 201 LADDPELTCRLN----------GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
            A++     R+           G+ E  P+ ++      L   +++     +AP+++   
Sbjct: 92  RAEN-YGGARIGAEGRGRRVASGMPEVPPIAVV-SARAHLDPHARLFTDTEVAPIVVTCA 149

Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           + DP            I+      +    L+  L   G+  +L EGG ++    I    V
Sbjct: 150 DADPARIRDLAAAGARIVTAGEVQITSEGLIAALDDLGLRRVLCEGGPSLFGQLIADDSV 209

Query: 309 DSIILYRSQIV 319
           D + L  + ++
Sbjct: 210 DEVCLTTAPVL 220


>gi|299470564|emb|CBN78552.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 258

 Score = 87.6 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/263 (18%), Positives = 78/263 (29%), Gaps = 88/263 (33%)

Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL------------------------------ 211
             H LR+  D ILVG GTV  D+P L  R                               
Sbjct: 1   MTHGLRSIHDGILVGAGTVRQDNPRLNIRHWPPASCGDGGRGTTSSEEEEEDAFDQARGS 60

Query: 212 -----NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF------ 260
                   +  +P  ++L  +      S++ ++  L   ++ T+   P            
Sbjct: 61  DAIGRGEKETAAPRAVVLAGNL-----SQLPRSMRLGGAVVFTDLSSPDAWRWLAEWAQR 115

Query: 261 -------RKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN--- 304
                  R  N  +I           D+   L  L   G  SL+VEGGA V  SF+    
Sbjct: 116 SREGSEDRAANDFVIVHSPLQADGRCDVGDCLEKLYSMGFRSLMVEGGATVISSFLRGCG 175

Query: 305 --------------SRLVDSIILYRSQIVIGE----------GGIPSPLEEGYLEKNFMC 340
                          +LVD +++  + + +             G  +           + 
Sbjct: 176 EEMARDEEFGRNPDGQLVDRVVVTIAPMFLQGYNVLATEGNACGARTTSPGAGFPLPLLD 235

Query: 341 VRRDYFGSDVCLEYIGKNLCLQE 363
           V     G D+ +  +G   C Q 
Sbjct: 236 VGFVRLGQDLVV--VGAPACCQG 256


>gi|317049171|ref|YP_004116819.1| CMP/dCMP deaminase zinc-binding protein [Pantoea sp. At-9b]
 gi|316950788|gb|ADU70263.1| CMP/dCMP deaminase zinc-binding protein [Pantoea sp. At-9b]
          Length = 165

 Score = 87.6 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 61/161 (37%), Gaps = 22/161 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M  ALR +R           V  ++V+   VIG G     G      HAE+ AL +
Sbjct: 6   DEYWMRHALRLARLAW--EQGEVPVGAVLVQGDTVIGEGWNRPIGQHDPTAHAEIMALRQ 63

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            G+          T YVTLEPC        CA  ++   I R+V    D     +G  L 
Sbjct: 64  GGKVLENYRLLDTTLYVTLEPC------VMCAGAMVHSRITRLVYGAKDEKTGAAGSLLD 117

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHIT 153
            +   G+     I   ++  E    L  +   + E++  + 
Sbjct: 118 VIGHPGMNHQIQIDSGVLAEECAAMLSDFFRMRREQKRALR 158


>gi|329940196|ref|ZP_08289478.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptomyces
           griseoaurantiacus M045]
 gi|329301022|gb|EGG44918.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptomyces
           griseoaurantiacus M045]
          Length = 300

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 76/222 (34%), Gaps = 13/222 (5%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD---- 203
            R  +   +  + D         S  I+G        +LRA +D ++VG  TV  +    
Sbjct: 80  PRPWLRANMVSTLDG-AAQHEGRSKSISGAADMRIFGVLRALADVVVVGAETVRREGYGP 138

Query: 204 ----DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
                     R    Q  +P   ++     L     +  +  +  +++     DP     
Sbjct: 139 AGARAEAAASRKAAGQGPAPAIAVVSAGLGLDFTLPLFTSPPVPTLLLTGAAADPARVAE 198

Query: 260 FRKKNINIIYCD---CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
             +   ++I        D  + +  L  RG+T LL EGG  +   F+ + ++D + L  +
Sbjct: 199 AERAGAHVILAGEGTGVDPARAVRALAERGLTRLLTEGGPRLLGQFVAADVLDELCLTVA 258

Query: 317 QIVI-GEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
            +++ G         E  + + F  V        +   Y  +
Sbjct: 259 PVMVAGGAQRIGGGPEVRVPRRFRPVSVLEEEGFLFTRYRRE 300


>gi|239917977|ref|YP_002957535.1| pyrimidine reductase-like protein [Micrococcus luteus NCTC 2665]
 gi|239839184|gb|ACS30981.1| pyrimidine reductase-like protein [Micrococcus luteus NCTC 2665]
          Length = 263

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 73/210 (34%), Gaps = 21/210 (10%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA-------- 202
            + +    S D         +  +     +  + L R  +D +LVG GT+ A        
Sbjct: 33  WVRVVFIASADG-AATLDGRAGGLGSPADQRLLSLSRHDADVVLVGAGTIRAEGYEGALL 91

Query: 203 ---DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND---DPVL 256
              D      R +      P   ++     L  +S     A + P I+ +      +P  
Sbjct: 92  SEEDR---RRRADAGGPADPPVAVVSGSLDLDPESAFFTAAPVRPWILTSRAALAGEPER 148

Query: 257 ALAFR-KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
           A A   +  +  +  +  D + ++  L  RG   +  EGG  +  S   + LVD + L  
Sbjct: 149 ATALAARAEVLAVGEEHVDPQTVVATLHARGARVVHCEGGPRLFGSLAAAGLVDEVHLTV 208

Query: 316 SQIVIG--EGGIPSPLEEGYLEKNFMCVRR 343
           + ++ G   G + +  +   L      V+ 
Sbjct: 209 APLLAGPAAGRVLTGEDGPGLPARLQLVQV 238


>gi|157150388|ref|YP_001449474.1| putative cytidine/deoxycytidylate deaminase [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|157075182|gb|ABV09865.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           gordonii str. Challis substr. CH1]
          Length = 177

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 67/163 (41%), Gaps = 23/163 (14%)

Query: 1   MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
           M  S  +   FM  AL+ +R  + L +    + C+IV+DG +IGRG  A         HA
Sbjct: 23  MNYSKEEKEYFMLEALKEAR--IALENDEIPIGCVIVRDGQIIGRGHNAREELQRAVMHA 80

Query: 56  EVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+EEA     G      T +VT+EPC        C+  I    I  VV    +    
Sbjct: 81  EIMAIEEANHHENGWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVVYGAANQKFG 134

Query: 111 VSGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
            +G          L+ +  +   +++ E    +  +   + +K
Sbjct: 135 AAGSLYDILTDERLNHRVEVETGVLQEECAQIMQDFFRNRRQK 177


>gi|170718532|ref|YP_001783741.1| CMP/dCMP deaminase zinc-binding [Haemophilus somnus 2336]
 gi|168826661|gb|ACA32032.1| CMP/dCMP deaminase zinc-binding [Haemophilus somnus 2336]
          Length = 166

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 65/170 (38%), Gaps = 23/170 (13%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAEVQ 58
           S FD + M  AL  +     L      V  ++V K G ++  G            HAE+ 
Sbjct: 3   SDFDEKMMRYALSLADKAEAL--GEIPVGAVLVDKQGDILAEGWNLSIIHNDPTAHAEII 60

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL +AG++ +       T YVTLEPC        CA  I+   I R+V    D      G
Sbjct: 61  ALRQAGQKLQNYRLLDTTLYVTLEPC------TMCAGAILHSRIGRLVFGAYDYKTGAVG 114

Query: 114 RGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAV 158
               + +   +     I   +++ E    +  +  ++ +++ H+      
Sbjct: 115 SRFHFFNDYKMNHMLEITGGVLQEECSQKISTFFQKRRKQKKHLKPNFKP 164


>gi|104783359|ref|YP_609857.1| cytidine/deoxycytidylate deaminase [Pseudomonas entomophila L48]
 gi|95112346|emb|CAK17073.1| putative cytidine/deoxycytidylate deaminase [Pseudomonas
           entomophila L48]
          Length = 145

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/129 (31%), Positives = 56/129 (43%), Gaps = 18/129 (13%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEE 66
           M  AL  +     L      V  ++V+ G VIG+G            HAE+ A+  A + 
Sbjct: 1   MRLALELAAQGAAL--GEVPVGAVLVQHGQVIGQGFNRPIIDSDPSAHAEMVAIRAAAKS 58

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           A      G+T YVTLEPCS       CA  I+   + RVV    +P   +     Q+ SQ
Sbjct: 59  ASNYRLPGSTLYVTLEPCSM------CAGLIVHSRVARVVYGALEPKAGIVQSQGQFFSQ 112

Query: 122 KGIIVDRMM 130
            G +  R+M
Sbjct: 113 -GFLNHRVM 120


>gi|319787039|ref|YP_004146514.1| CMP/dCMP deaminase zinc-binding protein [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465551|gb|ADV27283.1| CMP/dCMP deaminase zinc-binding protein [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 366

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 58/153 (37%), Gaps = 22/153 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA----YGGCPHAEVQA 59
           + D R M  AL  +          P V  ++V   G VIG G       +    HAE+ A
Sbjct: 212 AIDERHMCHALDLAERAEKEFDEIP-VGAVVVSAAGEVIGEGWNRNILDHDPSAHAEIMA 270

Query: 60  LEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           + +AG+        GAT YVTLEPC+       CA  ++   I RVV    DP     G 
Sbjct: 271 MRQAGQALSNHRLVGATLYVTLEPCAM------CAMALVHARIARVVYGAADPKTGACGS 324

Query: 115 GLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
                     + +  +   ++  E    L  Y 
Sbjct: 325 VFDVIGDPRHNHRVQVQGGVLGEEAGRRLTNYF 357


>gi|212637865|ref|YP_002314385.1| cytosine/adenosine deaminase [Anoxybacillus flavithermus WK1]
 gi|212559345|gb|ACJ32400.1| Cytosine/adenosine deaminase [Anoxybacillus flavithermus WK1]
          Length = 177

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEE 62
           D  +M  A+  ++    +      +  +IV +  VI R             HAE+ A++E
Sbjct: 19  DEYYMHLAIEEAKKAEKI--GEVPIGAVIVYNDQVIARAHNLRERDQRSIAHAELLAIDE 76

Query: 63  AGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++        AT YVTLEPC+       CA  I+   I+RVV    DP    +G  + 
Sbjct: 77  ACKKLGTWRLEQATLYVTLEPCAM------CAGAIVLSRIKRVVFGASDPKGGCAGTLMN 130

Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYL 142
            L       +  +V  ++  +    L  + 
Sbjct: 131 LLQEPRFNHQVEVVSGILGEQCGNMLSEFF 160


>gi|50913560|ref|YP_059532.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
           MGAS10394]
 gi|71902843|ref|YP_279646.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes MGAS6180]
 gi|94987813|ref|YP_595914.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes MGAS9429]
 gi|94989691|ref|YP_597791.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
           MGAS10270]
 gi|94991689|ref|YP_599788.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes MGAS2096]
 gi|94993570|ref|YP_601668.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
           MGAS10750]
 gi|306828137|ref|ZP_07461400.1| cytidine/deoxycytidylate deaminase [Streptococcus pyogenes ATCC
           10782]
 gi|50902634|gb|AAT86349.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
           MGAS10394]
 gi|71801938|gb|AAX71291.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes MGAS6180]
 gi|94541321|gb|ABF31370.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes MGAS9429]
 gi|94543199|gb|ABF33247.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
           MGAS10270]
 gi|94545197|gb|ABF35244.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes MGAS2096]
 gi|94547078|gb|ABF37124.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
           MGAS10750]
 gi|304429674|gb|EFM32720.1| cytidine/deoxycytidylate deaminase [Streptococcus pyogenes ATCC
           10782]
          Length = 179

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 65/178 (36%), Gaps = 23/178 (12%)

Query: 1   MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
           MP S      FM  AL+ +   +        + C+IVKDG +IGRG  A         HA
Sbjct: 9   MPYSLEEQTYFMQEALKEAEKSLQKAE--IPIGCVIVKDGEIIGRGHNAREESNQAIMHA 66

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+ EA            T +VT+EPC        C+  I    I  V+    +    
Sbjct: 67  EMMAINEANAHEGNWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVIYGASNQKFG 120

Query: 111 VSGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163
            +    Q      L+ +  +   ++ ++    +  +  +  E++      I    D  
Sbjct: 121 GADSLYQILTDERLNHRVQVERGLLAADCANIMQTFFRQGRERKKIAKHLIKEQSDPF 178


>gi|302554925|ref|ZP_07307267.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472543|gb|EFL35636.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Streptomyces
           viridochromogenes DSM 40736]
          Length = 267

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 72/223 (32%), Gaps = 13/223 (5%)

Query: 132 SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191
            E               R  +   +  + D         S PI+          LRA +D
Sbjct: 31  EELAAAYAYPEPGPGGPRPWLRANMVSTLDG-AAQHDGRSQPISSAADMRIFGTLRALAD 89

Query: 192 AILVGIGTVLAD--DP------ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
            ++VG  TV  +   P          R    Q  +P   ++     L     +  + L+ 
Sbjct: 90  VVVVGAETVRQEGYRPARARAEFAASREAAGQAPAPAIAVVTAGLDLDFSLPLFTSPLVP 149

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCD---CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
            +I+   +  P    A  K    ++        D  + +  L   G T LL EGG  +  
Sbjct: 150 TLILTGASAAPDRVAAAEKAGARVLTAGEGIGVDPARAVRALADLGHTRLLTEGGPRLLG 209

Query: 301 SFINSRLVDSIILYRSQIVI-GEGGIPSPLEEGYLEKNFMCVR 342
             + + ++D + L  S ++  G+    +      + + F  V 
Sbjct: 210 QLVAAGVLDELCLTVSPMLTAGDAQRIAGGPAVTVPRRFRLVS 252


>gi|88858578|ref|ZP_01133220.1| hypothetical protein PTD2_14349 [Pseudoalteromonas tunicata D2]
 gi|88820195|gb|EAR30008.1| hypothetical protein PTD2_14349 [Pseudoalteromonas tunicata D2]
          Length = 165

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 22/156 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
           D  +M  AL  +            V  ++V    +I  G       +    HAE+ A+  
Sbjct: 4   DEYWMQQALLRADKAE--AEGEIPVGAIVVYQDEIIAEGWNRSIISHDPSAHAEMLAIRN 61

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AG   +       T YVTLEPC+       CA  ++   ++RVV   DD         + 
Sbjct: 62  AGIALQNYRMIDCTLYVTLEPCAM------CAGALVHSRMKRVVYGADDLKTGAVKSVMN 115

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEK 148
            +          + + ++  E  + L A+  R+ ++
Sbjct: 116 IVQHSQFNHQLEVTEGVLAQECGLRLSAFFKRRRQE 151


>gi|326560462|gb|EGE10844.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis 7169]
          Length = 159

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 53/144 (36%), Gaps = 31/144 (21%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D   M+ AL  ++           V  ++V +G ++G G     T      HAE+ A+  
Sbjct: 3   DVEMMNHALEIAKQGAKF--GEIPVGAVVVYEGRILGEGYNCPITTQDPTAHAEIVAVRR 60

Query: 63  AGE------EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           A E        +G   YVTLEPC        C   +I   I RVV    +P         
Sbjct: 61  ACETLNNYRLPKGCILYVTLEPC------TMCFGALIHARISRVVFGAFEPK-------- 106

Query: 117 QWLSQKGIIVDRMMESEGKIFLHA 140
                 G++V ++   E   + H 
Sbjct: 107 -----AGVVVSQLKLPEQVFYNHH 125


>gi|217972561|ref|YP_002357312.1| zinc-binding CMP/dCMP deaminase [Shewanella baltica OS223]
 gi|217497696|gb|ACK45889.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica OS223]
          Length = 175

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 53/152 (34%), Gaps = 22/152 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
           D  +M  A+  +            V  ++VKDG  I  G       +    HAE+  L E
Sbjct: 13  DEHWMQVAMLMAENAE--AEGEVPVGAVLVKDGQQIATGYNLSISQHDPSAHAEILCLRE 70

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AG          AT YVTLEPC+       CA  ++   I RVV    D     +G  + 
Sbjct: 71  AGRLVENYRLLDATLYVTLEPCAM------CAGAMVHSRIARVVFGARDEKTGAAGTVVN 124

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTR 144
            L          +   ++       L  +  R
Sbjct: 125 LLQHPAFNHQVEVTSGVLADACSAQLSRFFKR 156


>gi|291518542|emb|CBK73763.1| Pyrimidine reductase, riboflavin biosynthesis [Butyrivibrio
           fibrisolvens 16/4]
          Length = 107

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 6/88 (6%)

Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           +  DL +L+  L   G+ S+L+EGG  + +S + S++VD I ++ +  + G     SP+E
Sbjct: 16  NGIDLNELMGKLGSLGIDSVLLEGGGTLNYSALESKIVDEIHIHIAPKIFGGS-SKSPVE 74

Query: 331 EGYLEKNFMCVRRDYF-----GSDVCLE 353
              +      ++ +       G+D+ +E
Sbjct: 75  GLGISDINKAIKLNPISTSWAGNDLIIE 102


>gi|15609808|ref|NP_217187.1| hypothetical protein Rv2671 [Mycobacterium tuberculosis H37Rv]
 gi|31793843|ref|NP_856336.1| hypothetical protein Mb2690 [Mycobacterium bovis AF2122/97]
 gi|121638546|ref|YP_978770.1| hypothetical protein BCG_2684 [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148662512|ref|YP_001284035.1| hypothetical protein MRA_2699 [Mycobacterium tuberculosis H37Ra]
 gi|148823860|ref|YP_001288615.1| hypothetical protein TBFG_12686 [Mycobacterium tuberculosis F11]
 gi|167970105|ref|ZP_02552382.1| hypothetical protein MtubH3_19568 [Mycobacterium tuberculosis
           H37Ra]
 gi|215404634|ref|ZP_03416815.1| hypothetical protein Mtub0_13300 [Mycobacterium tuberculosis
           02_1987]
 gi|215412467|ref|ZP_03421209.1| hypothetical protein Mtub9_14005 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215428096|ref|ZP_03426015.1| hypothetical protein MtubT9_17568 [Mycobacterium tuberculosis T92]
 gi|215431611|ref|ZP_03429530.1| hypothetical protein MtubE_13253 [Mycobacterium tuberculosis
           EAS054]
 gi|215446927|ref|ZP_03433679.1| hypothetical protein MtubT_13677 [Mycobacterium tuberculosis T85]
 gi|218754408|ref|ZP_03533204.1| hypothetical protein MtubG1_13689 [Mycobacterium tuberculosis GM
           1503]
 gi|219558677|ref|ZP_03537753.1| hypothetical protein MtubT1_15772 [Mycobacterium tuberculosis T17]
 gi|224991038|ref|YP_002645727.1| hypothetical protein JTY_2678 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253798247|ref|YP_003031248.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis KZN 1435]
 gi|254232778|ref|ZP_04926105.1| bifunctional enzyme riboflavin biosynthesis protein ribD :
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Mycobacterium tuberculosis C]
 gi|254365333|ref|ZP_04981378.1| bifunctional enzyme riboflavin biosynthesis protein ribD :
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254551722|ref|ZP_05142169.1| hypothetical protein Mtube_14899 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187688|ref|ZP_05765162.1| hypothetical protein MtubCP_16894 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260201799|ref|ZP_05769290.1| hypothetical protein MtubT4_17295 [Mycobacterium tuberculosis T46]
 gi|260205981|ref|ZP_05773472.1| hypothetical protein MtubK8_16955 [Mycobacterium tuberculosis K85]
 gi|289444212|ref|ZP_06433956.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Mycobacterium tuberculosis T46]
 gi|289448325|ref|ZP_06438069.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis CPHL_A]
 gi|289553544|ref|ZP_06442754.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis KZN 605]
 gi|289570844|ref|ZP_06451071.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis T17]
 gi|289575368|ref|ZP_06455595.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis K85]
 gi|289746470|ref|ZP_06505848.1| bifunctional enzyme riboflavin biosynthesis protein RibD
           [Mycobacterium tuberculosis 02_1987]
 gi|289751321|ref|ZP_06510699.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis T92]
 gi|289754772|ref|ZP_06514150.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289758798|ref|ZP_06518176.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289762841|ref|ZP_06522219.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Mycobacterium tuberculosis GM 1503]
 gi|294994236|ref|ZP_06799927.1| hypothetical protein Mtub2_06908 [Mycobacterium tuberculosis 210]
 gi|297635279|ref|ZP_06953059.1| hypothetical protein MtubK4_14205 [Mycobacterium tuberculosis KZN
           4207]
 gi|297732275|ref|ZP_06961393.1| hypothetical protein MtubKR_14354 [Mycobacterium tuberculosis KZN
           R506]
 gi|298526140|ref|ZP_07013549.1| RibD [Mycobacterium tuberculosis 94_M4241A]
 gi|306776951|ref|ZP_07415288.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu001]
 gi|306780853|ref|ZP_07419190.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu002]
 gi|306785476|ref|ZP_07423798.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu003]
 gi|306790074|ref|ZP_07428396.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu004]
 gi|306794157|ref|ZP_07432459.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu005]
 gi|306798576|ref|ZP_07436878.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu006]
 gi|306804435|ref|ZP_07441103.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu008]
 gi|306807527|ref|ZP_07444195.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu007]
 gi|306968729|ref|ZP_07481390.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu009]
 gi|306973064|ref|ZP_07485725.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu010]
 gi|307080772|ref|ZP_07489942.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu011]
 gi|307085364|ref|ZP_07494477.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu012]
 gi|313659608|ref|ZP_07816488.1| hypothetical protein MtubKV_14359 [Mycobacterium tuberculosis KZN
           V2475]
 gi|1550712|emb|CAB02325.1| POSSIBLE BIFUNCTIONAL ENZYME RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBD:
           DIAMINOHYDROXYPHOSPHORIBOSYLAMINOPYRIMIDINE DEAMINASE
           (RIBOFLAVIN-SPECIFIC DEAMINASE) +
           5-AMINO-6-(5-PHOSPHORIBOSYLAMINO)URACIL REDUCTASE (HTP
           REDUCTASE) [Mycobacterium tuberculosis H37Rv]
 gi|31619437|emb|CAD94875.1| POSSIBLE BIFUNCTIONAL ENZYME RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBD:
           DIAMINOHYDROXYPHOSPHORIBOSYLAMINOPYRIMIDINE DEAMINASE
           (RIBOFLAVIN-SPECIFIC DEAMINASE) +
           5-AMINO-6-(5-PHOSPHORIBOSYLAMINO)URACIL REDUCTASE (HTP
           REDUCTASE) [Mycobacterium bovis AF2122/97]
 gi|121494194|emb|CAL72672.1| Possible bifunctional enzyme riboflavin biosynthesis protein ribD:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124601837|gb|EAY60847.1| bifunctional enzyme riboflavin biosynthesis protein ribD :
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Mycobacterium tuberculosis C]
 gi|134150846|gb|EBA42891.1| bifunctional enzyme riboflavin biosynthesis protein ribD :
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148506664|gb|ABQ74473.1| bifunctional enzyme riboflavin biosynthesis protein RibD
           [Mycobacterium tuberculosis H37Ra]
 gi|148722387|gb|ABR07012.1| bifunctional enzyme riboflavin biosynthesis protein ribD:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Mycobacterium tuberculosis F11]
 gi|224774153|dbj|BAH26959.1| putative hypothetical protein [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253319751|gb|ACT24354.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis KZN 1435]
 gi|289417131|gb|EFD14371.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Mycobacterium tuberculosis T46]
 gi|289421283|gb|EFD18484.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis CPHL_A]
 gi|289438176|gb|EFD20669.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis KZN 605]
 gi|289539799|gb|EFD44377.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis K85]
 gi|289544598|gb|EFD48246.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis T17]
 gi|289686998|gb|EFD54486.1| bifunctional enzyme riboflavin biosynthesis protein RibD
           [Mycobacterium tuberculosis 02_1987]
 gi|289691908|gb|EFD59337.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis T92]
 gi|289695359|gb|EFD62788.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289710347|gb|EFD74363.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Mycobacterium tuberculosis GM 1503]
 gi|289714362|gb|EFD78374.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298495934|gb|EFI31228.1| RibD [Mycobacterium tuberculosis 94_M4241A]
 gi|308214608|gb|EFO74007.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu001]
 gi|308326253|gb|EFP15104.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu002]
 gi|308329858|gb|EFP18709.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu003]
 gi|308333424|gb|EFP22275.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu004]
 gi|308337491|gb|EFP26342.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu005]
 gi|308341164|gb|EFP30015.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu006]
 gi|308346123|gb|EFP34974.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu007]
 gi|308348919|gb|EFP37770.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu008]
 gi|308353691|gb|EFP42542.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu009]
 gi|308357538|gb|EFP46389.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu010]
 gi|308361486|gb|EFP50337.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu011]
 gi|308365093|gb|EFP53944.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis SUMu012]
 gi|323718731|gb|EGB27892.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis CDC1551A]
 gi|326904285|gb|EGE51218.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis W-148]
 gi|328458020|gb|AEB03443.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
           tuberculosis KZN 4207]
          Length = 258

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 72/204 (35%), Gaps = 17/204 (8%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
            +      S D         S  + G   +   +LLR  +D I+VG+GTV  +      R
Sbjct: 40  WLRANFISSLDGG-ATVDGTSGAMAGPGDRFVFNLLRELADVIVVGVGTVRIEGYS-GVR 97

Query: 211 LNGLQEHS---------PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
           +  +Q            P   I+    +L  D  +     +AP+++ T            
Sbjct: 98  MGVVQRQHRQARGQSEVPQLAIVTRSGRLDRDMAVFTRTEMAPLVLTTTAVADDTRQRLA 157

Query: 262 KKNINIIYCDCRDL-----KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
                +I C   D        L++ L  RG+  +L EGG  +  +F+   ++D + L  +
Sbjct: 158 GL-AEVIACSGDDPGTVDEAVLVSQLAARGLRRILTEGGPTLLGTFVERDVLDELCLTIA 216

Query: 317 QIVIGEGGIPSPLEEGYLEKNFMC 340
             V+G          G +     C
Sbjct: 217 PYVVGGLARRIVTGPGQVLTRMRC 240


>gi|126652937|ref|ZP_01725079.1| probable cytidine/deoxycytidylate deaminase family protein
           [Bacillus sp. B14905]
 gi|126590267|gb|EAZ84389.1| probable cytidine/deoxycytidylate deaminase family protein
           [Bacillus sp. B14905]
          Length = 170

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 60/156 (38%), Gaps = 22/156 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M +   D  FM  AL  ++    L      +  ++V DG +I R      T      HAE
Sbjct: 1   MDIFETDRLFMKQALEEAKKAAIL--GEVPIGAVLVYDGEIIARAHNLRETTQNATTHAE 58

Query: 57  VQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +  ++EA ++         T YVTLEPC      P CA  I++  + RVV    D     
Sbjct: 59  LMVIQEACQKIGSWRLEKTTLYVTLEPC------PMCAGAILQSRVPRVVYGARDMKAGC 112

Query: 112 SGRGLQWLSQK-----GIIVDRMMESEGKIFLHAYL 142
                + L+         + + ++ +E    L  + 
Sbjct: 113 VDSLYRLLNDARFNHECEVSEGILAAECGQILTDFF 148


>gi|325128107|gb|EGC51002.1| tRNA-specific adenosine deaminase [Neisseria meningitidis N1568]
          Length = 163

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 60/156 (38%), Gaps = 22/156 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P       FM  ALR +            V  +IV DG +I               HAE+
Sbjct: 11  PSQEEMEHFMREALRQAEQSA--ADGEIPVGAVIVSDGKIIASAHNTCIADCNVSRHAEI 68

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+    +P    +
Sbjct: 69  NALAQAGREIQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGAAEPKTGAA 122

Query: 113 GRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLT 143
           G  +       L+    I   +++ E +  L  +  
Sbjct: 123 GSIVNLFADKRLNTHTAIRGGILQEECRAVLSRFFQ 158


>gi|257094052|ref|YP_003167693.1| CMP/dCMP deaminase zinc-binding [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046576|gb|ACV35764.1| CMP/dCMP deaminase zinc-binding [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 153

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 22/151 (14%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALE 61
            D  FM  AL  ++           V  L+V+DG+++GRG  +  G      HAE+ AL 
Sbjct: 2   DDEYFMREALSLAQAAE--CLGEVPVGALVVRDGVIVGRGFNSPIGEHDPTAHAEIAALR 59

Query: 62  EAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           +A    R     G   +VTLEPC+       CA  +++  + R+V    DP   V G  +
Sbjct: 60  DAARTLRNYRLPGCELFVTLEPCAM------CAGAMLQARLARLVYGARDPKTGVHGSVV 113

Query: 117 QW-----LSQKGIIVDRMMESEGKIFLHAYL 142
                  L+    +V  ++ +E    L  + 
Sbjct: 114 DLFAVGRLNHHTQVVGGVLAAECGRLLSDFF 144


>gi|213622248|ref|ZP_03375031.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
          deaminase/5-amino-6-(5-phosphoribosylamino)uracil
          reductase [Salmonella enterica subsp. enterica serovar
          Typhi str. E98-2068]
          Length = 47

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 25/46 (54%)

Query: 6  FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG 51
           D  +M+ AL+ ++     T  NP+V C+IV +G ++G G     G
Sbjct: 2  QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAG 47


>gi|52424459|ref|YP_087596.1| hypothetical protein MS0404 [Mannheimia succiniciproducens MBEL55E]
 gi|52306511|gb|AAU37011.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 176

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 60/155 (38%), Gaps = 23/155 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTA----YGGCPHAEVQA 59
           SFD + M+ AL  +     L      V  ++V + G +IG G            HAE+ A
Sbjct: 6   SFDEKMMNRALFLADKAEAL--GEIPVGAVLVDERGNIIGEGWNLSIVNSDPTAHAEIIA 63

Query: 60  LEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           L  A ++ +       T YVTLEPC        CA  I+   I+R+V    D      G 
Sbjct: 64  LRNAAQKIQNYRLLNTTLYVTLEPC------TMCAGAILHSRIKRLVFGASDYKTGAVGS 117

Query: 115 GLQWLSQ----KGIIVD-RMMESEGKIFLHAYLTR 144
              +        G+ +   +++ +    L  +  +
Sbjct: 118 RFHFFEDYKMNHGVEITSGVLQDQCSQKLSRFFQK 152


>gi|309782085|ref|ZP_07676815.1| tRNA-specific adenosine deaminase [Ralstonia sp. 5_7_47FAA]
 gi|308919151|gb|EFP64818.1| tRNA-specific adenosine deaminase [Ralstonia sp. 5_7_47FAA]
          Length = 182

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 66/173 (38%), Gaps = 22/173 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56
           M     D  +M  AL  +++  G       V  ++V+   ++G G  A  G      HAE
Sbjct: 13  MSAHERDGYWMQQALVQAKFAWGQ--GEVPVGAVVVRGNEIVGVGYNAPIGTHDPSAHAE 70

Query: 57  VQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           ++AL +A E+           +VTLEPC        CA  ++   + RVV    DP    
Sbjct: 71  MRALRQAAEKLGNYRLPDCEVFVTLEPC------VMCAGAMLHARVARVVYGAPDPKTGA 124

Query: 112 SGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
           +G  L       L+ +  I   ++  E    L A+   +   +    L    S
Sbjct: 125 AGSILDLFAETRLNHQTAITGSVLAQECGDMLRAFFAERRATQKAARLAATES 177


>gi|261392718|emb|CAX50291.1| tRNA-specific adenosine deaminase [Neisseria meningitidis 8013]
          Length = 239

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 59/156 (37%), Gaps = 22/156 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P       FM  ALR +            V  +IV DG +I               HAE+
Sbjct: 87  PPQEEMEHFMCEALRQAEQS--SADGEIPVGAVIVSDGKIIASAHNTCIADCNVSRHAEI 144

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+    +P    +
Sbjct: 145 NALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGAAEPKTGAA 198

Query: 113 GRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLT 143
           G  +       L+    I   +++ E    L  +  
Sbjct: 199 GSIVNLFADKRLNTHTAIRGGILQEECCAVLSRFFQ 234


>gi|299820898|ref|ZP_07052787.1| tRNA-specific adenosine deaminase [Listeria grayi DSM 20601]
 gi|299817919|gb|EFI85154.1| tRNA-specific adenosine deaminase [Listeria grayi DSM 20601]
          Length = 173

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 22/147 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
           FM  A++ +R    L      +  ++V D  +IGRG     T      HAE+ A++ A +
Sbjct: 19  FMEEAIKEARKAQAL--GEVPIGAVVVLDNEIIGRGHNLRETTQNAITHAEILAIQAACQ 76

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                    A  YVTLEPC      P C+  I+   +++V     DP    +G  +  L 
Sbjct: 77  NRESWRLSEAEIYVTLEPC------PMCSGAILLSRLKKVYYGAPDPKAGTAGTLMNLLQ 130

Query: 121 -----QKGIIVDRMMESEGKIFLHAYL 142
                    +   ++++E    L ++ 
Sbjct: 131 DDRFNHTCEVEAGLLQTECAELLTSFF 157


>gi|308050412|ref|YP_003913978.1| tRNA-adenosine deaminase [Ferrimonas balearica DSM 9799]
 gi|307632602|gb|ADN76904.1| tRNA-adenosine deaminase [Ferrimonas balearica DSM 9799]
          Length = 170

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 17/123 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
            ++M+ A++ +     L      V  ++V+DG VI  G     T      HAE+  L  A
Sbjct: 5   QKWMAHAMKLAEQAEAL--GEVPVGAVLVRDGEVIAEGFNQSITLNDPSAHAEMLCLRAA 62

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G+          T YVTLEPCS       CA  ++   I  +V    D     +G  +  
Sbjct: 63  GQALENYRLLDTTLYVTLEPCSM------CAGAMVHARIGTLVYGASDAKTGAAGSVMDL 116

Query: 119 LSQ 121
           +  
Sbjct: 117 VRH 119


>gi|145632283|ref|ZP_01788018.1| hypothetical protein CGSHi3655_07509 [Haemophilus influenzae 3655]
 gi|145634073|ref|ZP_01789784.1| hypothetical protein CGSHiAA_08515 [Haemophilus influenzae PittAA]
 gi|229844039|ref|ZP_04464180.1| hypothetical protein CGSHi6P18H1_06366 [Haemophilus influenzae
           6P18H1]
 gi|144987190|gb|EDJ93720.1| hypothetical protein CGSHi3655_07509 [Haemophilus influenzae 3655]
 gi|145268517|gb|EDK08510.1| hypothetical protein CGSHiAA_08515 [Haemophilus influenzae PittAA]
 gi|229813033|gb|EEP48721.1| hypothetical protein CGSHi6P18H1_06366 [Haemophilus influenzae
           6P18H1]
          Length = 173

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 63/174 (36%), Gaps = 23/174 (13%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVT----AYGGCPHAEVQ 58
           S FD + M  AL  +     L      V  ++V D   +IG G            HAE+ 
Sbjct: 8   SEFDEKMMRYALELADKAEAL--GEIPVGAVLVDDARNIIGEGWNLSIVQSDPTAHAEII 65

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL    +  +      +T YVTLEPC        CA  I+   I+R+V    D      G
Sbjct: 66  ALRNGAKNIQNYRLLNSTLYVTLEPC------TMCAGAILHSRIKRLVFGASDYKTGAIG 119

Query: 114 RGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
               + +   +     I   ++  E    L  +  ++ E++      +    DN
Sbjct: 120 SRFHFFNDYKMNHTLEITSGVLAEECSQKLSTFFQKRREEKKIEKALLKSLSDN 173


>gi|21909689|ref|NP_663957.1| putative cytidine/deoxycytidylate deaminase family protein
           [Streptococcus pyogenes MGAS315]
 gi|56807966|ref|ZP_00365780.1| COG0590: Cytosine/adenosine deaminases [Streptococcus pyogenes M49
           591]
 gi|73921034|sp|Q8K8Q9|TADA_STRP3 RecName: Full=tRNA-specific adenosine deaminase
 gi|73921083|sp|Q5XE14|TADA_STRP6 RecName: Full=tRNA-specific adenosine deaminase
 gi|21903872|gb|AAM78760.1| putative cytidine/deoxycytidylate deaminase family protein
           [Streptococcus pyogenes MGAS315]
          Length = 171

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 65/178 (36%), Gaps = 23/178 (12%)

Query: 1   MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
           MP S      FM  AL+ +   +        + C+IVKDG +IGRG  A         HA
Sbjct: 1   MPYSLEEQTYFMQEALKEAEKSLQKAE--IPIGCVIVKDGEIIGRGHNAREESNQAIMHA 58

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+ EA            T +VT+EPC        C+  I    I  V+    +    
Sbjct: 59  EMMAINEANAHEGNWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVIYGASNQKFG 112

Query: 111 VSGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163
            +    Q      L+ +  +   ++ ++    +  +  +  E++      I    D  
Sbjct: 113 GADSLYQILTDERLNHRVQVERGLLAADCANIMQTFFRQGRERKKIAKHLIKEQSDPF 170


>gi|293390603|ref|ZP_06634937.1| tRNA-specific adenosine deaminase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951137|gb|EFE01256.1| tRNA-specific adenosine deaminase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 175

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 67/180 (37%), Gaps = 23/180 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHAE 56
             +  D +FM  AL  +     L      V  ++V + G +IG G            HAE
Sbjct: 4   SQTHLDEKFMRHALMLAGKAEAL--GEIPVGAVLVSEAGEIIGEGWNLSIIHSDPTAHAE 61

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL + G++ +       T YVTLEPC        CA  I+   I+R+V    D     
Sbjct: 62  IVALRQGGQKLQNYRLLNITLYVTLEPC------TMCAGAILHSRIKRLVFGAADYKTGA 115

Query: 112 SGRGLQ-----WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM 166
            G          ++    I   +++ E    L A+  ++  ++    L +    D +   
Sbjct: 116 VGSRFHFFDDYKMNHVIEITGGVLQQECSEKLSAFFQKRRAQQKEAKLALEPISDAVFDT 175


>gi|15842209|ref|NP_337246.1| hypothetical protein MT2745 [Mycobacterium tuberculosis CDC1551]
 gi|13882497|gb|AAK47060.1| riboflavin-specific deaminase-related protein [Mycobacterium
           tuberculosis CDC1551]
          Length = 239

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 72/204 (35%), Gaps = 17/204 (8%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
            +      S D         S  + G   +   +LLR  +D I+VG+GTV  +      R
Sbjct: 21  WLRANFISSLDGG-ATVDGTSGAMAGPGDRFVFNLLRELADVIVVGVGTVRIEGYS-GVR 78

Query: 211 LNGLQEHS---------PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
           +  +Q            P   I+    +L  D  +     +AP+++ T            
Sbjct: 79  MGVVQRQHRQARGQSEVPQLAIVTRSGRLDRDMAVFTRTEMAPLVLTTTAVADDTRQRLA 138

Query: 262 KKNINIIYCDCRDL-----KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
                +I C   D        L++ L  RG+  +L EGG  +  +F+   ++D + L  +
Sbjct: 139 GL-AEVIACSGDDPGTVDEAVLVSQLAARGLRRILTEGGPTLLGTFVERDVLDELCLTIA 197

Query: 317 QIVIGEGGIPSPLEEGYLEKNFMC 340
             V+G          G +     C
Sbjct: 198 PYVVGGLARRIVTGPGQVLTRMRC 221


>gi|322374121|ref|ZP_08048655.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           sp. C150]
 gi|321277087|gb|EFX54158.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           sp. C150]
          Length = 172

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
            FMS AL+ ++  +        + C+IVKDG ++GRG  A         HAEV A++EA 
Sbjct: 11  FFMSEALKEAQKSLDKAE--IPIGCVIVKDGEIVGRGHNAREELNQAIMHAEVMAIQEAN 68

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                      T +VT+EPC        C+  I    I +V+    +     +G     L
Sbjct: 69  RTIGNWRLLDCTLFVTIEPC------VMCSGAIGLARIPKVIYGASNQKFGGAGSLYDIL 122

Query: 120 S-----QKGIIVDRMMESEGKIFLHAYL 142
                  +  +   +ME E    +  + 
Sbjct: 123 RDERLNHRVDLETGVMEKECAEIMQNFF 150


>gi|167723579|ref|ZP_02406815.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
          DM98]
          Length = 63

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 29/60 (48%)

Query: 3  VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
           S  D   M+ ALR +   +  T  NP V C+I +    +G G     G PHAEV AL E
Sbjct: 4  FSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALRE 63


>gi|84496266|ref|ZP_00995120.1| hypothetical protein JNB_02065 [Janibacter sp. HTCC2649]
 gi|84383034|gb|EAP98915.1| hypothetical protein JNB_02065 [Janibacter sp. HTCC2649]
          Length = 231

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 69/208 (33%), Gaps = 23/208 (11%)

Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203
                   +      + D         S  I         HL R  +D +LVG GTV A 
Sbjct: 26  YAWPTDGGVRANFVSTLDGSAVGGDSRSGSINTEADGRIFHLQRELADCVLVGAGTVRA- 84

Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
                      +   P+ +++     L         +    VI+ T              
Sbjct: 85  -------EGYRRGSKPI-VVVSRRGHLPESL----ASGEGDVILATCAAS----GRSDAD 128

Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           ++ I   D  DL  ++  L   G+  +L EGG  + HS +++ LVD   L  +  ++G  
Sbjct: 129 DVWIEGDDEVDLPAVVARLRTAGMPRVLAEGGPHLFHSLLDAGLVDEFALTLAPRLVGGD 188

Query: 324 ------GIPSPLEEGYLEKNFMCVRRDY 345
                 GIP   E G   +    +  D+
Sbjct: 189 HVRVVAGIPLGGESGLDTEIVHLLEEDH 216


>gi|187928419|ref|YP_001898906.1| CMP/dCMP deaminase zinc-binding [Ralstonia pickettii 12J]
 gi|187725309|gb|ACD26474.1| CMP/dCMP deaminase zinc-binding [Ralstonia pickettii 12J]
          Length = 182

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 66/173 (38%), Gaps = 22/173 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56
           M     D  +M  AL  +++  G       V  ++V+   ++G G  A  G      HAE
Sbjct: 13  MSAHERDGYWMQQALVQAKFAWGQ--GEVPVGAVVVRGNEIVGVGYNAPIGTHDPSAHAE 70

Query: 57  VQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           ++AL +A E+           +VTLEPC        CA  ++   + RVV    DP    
Sbjct: 71  MRALRQAAEKLGNYRLPDCEVFVTLEPC------VMCAGAMLHARVARVVYGAPDPKTGA 124

Query: 112 SGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
           +G  L       L+ +  I   ++  E    L A+   +   +    L    S
Sbjct: 125 AGSILDLFAETRLNHQTAITGSVLAQECGDMLRAFFAERRATQKAARLAATES 177


>gi|206889673|ref|YP_002249189.1| cytosine deaminase [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741611|gb|ACI20668.1| cytosine deaminase [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 154

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 62/156 (39%), Gaps = 22/156 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M   ++D  FM  AL+ +            V  LIV +G +I +      T +    HAE
Sbjct: 1   MDQLAYDEYFMKEALKEAEKA--YEKGEIPVGALIVVNGEIISKAHNIKETTFDPTAHAE 58

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ EA           AT YVT EPC        C+  I+   I+R+V   +DP    
Sbjct: 59  ILAIREAARILGAWRLTDATLYVTKEPCIM------CSGAIVNSRIKRLVYGCNDPKGGA 112

Query: 112 SGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
                       L+ +  I + ++E E ++ L  + 
Sbjct: 113 VVSLYNILNDKRLNHQVEITNGILEEECRVILKRFF 148


>gi|194735718|ref|YP_002115631.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197301052|ref|ZP_02663371.2| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|204929496|ref|ZP_03220570.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|194711220|gb|ACF90441.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288879|gb|EDY28252.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|204321215|gb|EDZ06415.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 172

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 61/163 (37%), Gaps = 23/163 (14%)

Query: 1   MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
           M     D   +M  AL  ++           V  ++V +  VIG G     G      HA
Sbjct: 1   MSDVELDHEYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHA 58

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ AL + G   +       T YVTLEPC        CA  ++   I RVV    D    
Sbjct: 59  EIMALRQGGLVLQNYRLLDTTLYVTLEPC------VMCAGAMVHSRIGRVVFGARDAKTG 112

Query: 111 VSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEK 148
            +G  +  L   G+     I++ ++  E    L  +   + ++
Sbjct: 113 AAGSLIDVLHHPGMNHRVDIIEGVLRDECATLLSDFFRMRRQE 155


>gi|68249492|ref|YP_248604.1| hypothetical protein NTHI1073 [Haemophilus influenzae 86-028NP]
 gi|145636963|ref|ZP_01792627.1| preprotein translocase subunit SecA [Haemophilus influenzae PittHH]
 gi|145638273|ref|ZP_01793883.1| preprotein translocase subunit SecA [Haemophilus influenzae PittII]
 gi|68057691|gb|AAX87944.1| conserved hypothetical protein [Haemophilus influenzae 86-028NP]
 gi|145269821|gb|EDK09760.1| preprotein translocase subunit SecA [Haemophilus influenzae PittHH]
 gi|145272602|gb|EDK12509.1| preprotein translocase subunit SecA [Haemophilus influenzae PittII]
 gi|309751427|gb|ADO81411.1| tRNA-specific adenosine deaminase [Haemophilus influenzae R2866]
 gi|309973597|gb|ADO96798.1| tRNA-specific adenosine deaminase [Haemophilus influenzae R2846]
          Length = 173

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 62/174 (35%), Gaps = 23/174 (13%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVT----AYGGCPHAEVQ 58
           S FD + M  AL  +     L      V  ++V D   +IG G            HAE+ 
Sbjct: 8   SEFDEKMMRYALELADKAEAL--GEIPVGAVLVDDARNIIGEGWNLSIVQSDPTAHAEII 65

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL    +  +      +T YVTLEPC        CA  I+   I+R+V    D      G
Sbjct: 66  ALRNGAKNIQNYRLLNSTLYVTLEPC------TMCAGAILHSRIKRLVFGASDYKTGAIG 119

Query: 114 RGLQ-----WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
                     ++    I   ++  E    L  +  ++ E++      +    DN
Sbjct: 120 SRFHFFDDYKMNHTLEITSGVLAEECSQKLSTFFQKRREEKKIEKALLKSLSDN 173


>gi|322620458|gb|EFY17323.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625074|gb|EFY21903.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629482|gb|EFY26258.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322639849|gb|EFY36528.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644265|gb|EFY40809.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649957|gb|EFY46377.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322658212|gb|EFY54478.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|323200394|gb|EFZ85475.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201294|gb|EFZ86361.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208364|gb|EFZ93304.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323221772|gb|EGA06180.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323245221|gb|EGA29222.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248795|gb|EGA32722.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323259073|gb|EGA42721.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261995|gb|EGA45560.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267779|gb|EGA51260.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
          Length = 172

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 61/163 (37%), Gaps = 23/163 (14%)

Query: 1   MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
           M     D   +M  AL  ++           V  ++V +  VIG G     G      HA
Sbjct: 1   MSDVELDHEYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHA 58

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ AL + G   +       T YVTLEPC        CA  I+   I RVV    D    
Sbjct: 59  EIMALRQGGLVLQNYRLLDTTLYVTLEPC------VMCAGAIVHSRIGRVVFGARDAKTG 112

Query: 111 VSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEK 148
            +G  +  L   G+     I++ ++  E    L  +   + ++
Sbjct: 113 AAGSLIDVLHHPGMNHRVDIIEGVLRDECATLLSDFFRMRRQE 155


>gi|118463485|ref|YP_882741.1| hypothetical protein MAV_3563 [Mycobacterium avium 104]
 gi|118164772|gb|ABK65669.1| riboflavin biosynthesis protein RibD C- domain protein
           [Mycobacterium avium 104]
          Length = 254

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 78/226 (34%), Gaps = 17/226 (7%)

Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
           + E +       Y        + +      S D     A   S  + G   +   +LLR 
Sbjct: 14  VREVDDGELPGLYDYPDRHAGTWVRANFIASVDGG-ATADGSSGAMGGPGDRFVFNLLRE 72

Query: 189 QSDAILVGIGTVLADD---PELTCRLNGL------QEHSPMRIILDPHFKLSLDSKIIKT 239
            +D I+VG GTV  +     +L              E  P+ I+      L+ D  +   
Sbjct: 73  LADVIVVGAGTVRIEGYSGAQLGVAQRQQRQARGQSEVPPLGIV-TKSGHLNRDMAVFTR 131

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL-----LTILVGRGVTSLLVEG 294
             + P+++                   ++ C   D +++     L +L  RG+  +L EG
Sbjct: 132 TEVPPLVLTCAAAADQTRRLLSGL-CEVLDCSAGDPERVDEATMLALLGERGMRRILTEG 190

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
           G  + +S +  +L+D + L  +  ++G          G L     C
Sbjct: 191 GPTLLNSLLERQLLDELCLTIAPYLVGGHARRIATGPGQLLTRMRC 236


>gi|326798488|ref|YP_004316307.1| CMP/dCMP deaminase zinc-binding protein [Sphingobacterium sp. 21]
 gi|326549252|gb|ADZ77637.1| CMP/dCMP deaminase zinc-binding protein [Sphingobacterium sp. 21]
          Length = 156

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 58/151 (38%), Gaps = 17/151 (11%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEV 57
             S  D  FM  ALR ++      +    +  +IV DG +I RG     T      HAE+
Sbjct: 10  SDSVSDEFFMKEALREAQKA--FDADEVPIGAVIVHDGKIIARGHNLTETLNDVTAHAEM 67

Query: 58  QALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           QA   A     G+  +  T YVT+EPC        CA       I+R+V    D     +
Sbjct: 68  QAFTAAANYIGGKYLKDCTLYVTIEPC------VMCAGASYWSQIKRIVFGARDEKRGYA 121

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHAYLT 143
                 +  K  +V  +ME   +  +  +  
Sbjct: 122 TISKDIVHPKTTVVSGIMEETCRELMQRFFQ 152


>gi|154684537|ref|YP_001419698.1| YaaJ [Bacillus amyloliquefaciens FZB42]
 gi|154350388|gb|ABS72467.1| YaaJ [Bacillus amyloliquefaciens FZB42]
          Length = 160

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 64/166 (38%), Gaps = 22/166 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  +M  A++ ++           +  ++V    ++ R      T      HAE+ A++E
Sbjct: 3   DEYYMREAIKEAKKAE--AKGEVPIGAVLVLHDEIVARAHNLRETEQRSLAHAEMLAIDE 60

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A           A  YVTLEPC      P CA  ++   + +VV    DP    +G  + 
Sbjct: 61  ACRKLGTWRLEDAVLYVTLEPC------PMCAGAVVLSRVDKVVFGAFDPKGGCTGTLMN 114

Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAV 158
            L       +  +V  ++  E    L A+  +   ++  +  K++ 
Sbjct: 115 LLQEERFNHQAEVVSGVLGEECGEMLSAFFRKLRRQKKDMRKKLSE 160


>gi|161502277|ref|YP_001569389.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863624|gb|ABX20247.1| hypothetical protein SARI_00307 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 176

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 61/155 (39%), Gaps = 22/155 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL + 
Sbjct: 20  EYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQG 77

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +       T YVTLEPC        CA  ++   IRRVV    D     +G  +  
Sbjct: 78  GLVLQNYRLLDTTLYVTLEPC------VMCAGAMVHSRIRRVVFGARDAKTGAAGSLIDV 131

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYLTRQVEK 148
           L   G+     I++ ++  E  + L  +   + ++
Sbjct: 132 LHHPGMNHRVEIIEGVLHDECAMLLSDFFRMRRQE 166


>gi|268611568|ref|ZP_06145295.1| cytosine/adenosine deaminase [Ruminococcus flavefaciens FD-1]
          Length = 153

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 56/148 (37%), Gaps = 23/148 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGV----TAYGGCPHAEVQALEEA 63
           +M  AL  +R           V  ++VK   G ++G G     TA     HAE++A+++A
Sbjct: 4   YMKRALELAREA--FDEGEVPVGAVVVKKTTGEIVGEGRNRRETAKNALAHAEIEAIDQA 61

Query: 64  GEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
             +  G        YVTLEPC      P C   II   I  V     D     +    + 
Sbjct: 62  CRKLGGWRLPECALYVTLEPC------PMCCGAIINSRIDNVYFGAYDYKSGSAESVQKM 115

Query: 119 L----SQKGIIVDRMMESEGKIFLHAYL 142
                + +  ++  +ME E    L  + 
Sbjct: 116 FSLPYNYRPEVMGGIMEEECSAILSEFF 143


>gi|241662996|ref|YP_002981356.1| CMP/dCMP deaminase zinc-binding [Ralstonia pickettii 12D]
 gi|240865023|gb|ACS62684.1| CMP/dCMP deaminase zinc-binding [Ralstonia pickettii 12D]
          Length = 182

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 66/173 (38%), Gaps = 22/173 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56
           M     D  +M  AL  +++  G       V  ++V+   ++G G  A  G      HAE
Sbjct: 13  MSAHERDGYWMQQALVQAKFAWGQ--GEVPVGAVVVRGNEIVGVGYNAPIGTHDPSAHAE 70

Query: 57  VQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           ++AL +A E+           +VTLEPC        CA  ++   + RVV    DP    
Sbjct: 71  MRALRQAAEKLGNYRLPDCEVFVTLEPC------VMCAGAMLHARVARVVYGAPDPKTGA 124

Query: 112 SGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
           +G  L       L+ +  I   ++  E    L A+   +   +    L    S
Sbjct: 125 AGSILDLFAETRLNHQTAITGSVLAQECGDMLRAFFAERRATQKAARLAATES 177


>gi|301154746|emb|CBW14209.1| tRNA-specific adenosine deaminase [Haemophilus parainfluenzae T3T1]
          Length = 172

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 49/128 (38%), Gaps = 18/128 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHAEVQ 58
           S  D +FM  AL  +     L      V  ++V D G ++G G       +    HAE+ 
Sbjct: 3   SDLDEKFMQHALMLADRAEAL--GEIPVGAVLVDDEGNILGEGWNLSIIEHDPTAHAEIV 60

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL  A +  +       T YVTLEPC        CA  I+   I+R+V    D      G
Sbjct: 61  ALRNAAQNIQNYRLLNTTLYVTLEPC------TMCAGAILHSRIKRLVFGASDYKTGAVG 114

Query: 114 RGLQWLSQ 121
               +   
Sbjct: 115 SRFHFFDD 122


>gi|239637751|ref|ZP_04678718.1| tRNA-specific adenosine deaminase [Staphylococcus warneri L37603]
 gi|239596653|gb|EEQ79183.1| tRNA-specific adenosine deaminase [Staphylococcus warneri L37603]
          Length = 168

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 58/154 (37%), Gaps = 22/154 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  +M  A++ ++    L      +  +IVK+G VI R      T      HAE  A+
Sbjct: 2   ETDEYYMKLAIQEAKKAELL--GEVPIGAIIVKNGHVIARAHNLRETMQQPTAHAEHLAI 59

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           E A +          T YVTLEPC        CA  I+   I  +     DP    SG  
Sbjct: 60  ERAAKVLGSWRLEDCTLYVTLEPC------VMCAGTIVMSRIPYIKYGAADPKGGCSGSL 113

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYLTR 144
           +  L     + +  +   ++E +    L  +  +
Sbjct: 114 MNLLNQPDFNHRAQVESGLLEEQCGDLLRNFFRK 147


>gi|255994527|ref|ZP_05427662.1| tRNA-specific adenosine deaminase [Eubacterium saphenum ATCC 49989]
 gi|255993240|gb|EEU03329.1| tRNA-specific adenosine deaminase [Eubacterium saphenum ATCC 49989]
          Length = 151

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 54/149 (36%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
             FM  AL  ++           V  +IVK+G VI +             HAE+ A+++A
Sbjct: 3   EDFMRVALEEAKKAYKQ--GEVPVGAVIVKNGKVISKAHNETRQKKNAVAHAEILAIDKA 60

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                 E       YVTLEPC+       CA  I++  I  V++   D     +   L  
Sbjct: 61  CKKLENERLVDTEMYVTLEPCAM------CAGAIVQARIPEVMIGTRDLKSGAANTILNV 114

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYL 142
           L       +  +   + E E    L  + 
Sbjct: 115 LENEKLNHRAELRFGIFEEECSEILKTFF 143


>gi|194469725|ref|ZP_03075709.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197248207|ref|YP_002147526.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|200387835|ref|ZP_03214447.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205358526|ref|ZP_02657204.2| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205359943|ref|ZP_02833442.2| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194456089|gb|EDX44928.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197211910|gb|ACH49307.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|199604933|gb|EDZ03478.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205333662|gb|EDZ20426.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205341963|gb|EDZ28727.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
          Length = 172

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 61/163 (37%), Gaps = 23/163 (14%)

Query: 1   MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
           M     D   +M  AL  ++           V  ++V +  VIG G     G      HA
Sbjct: 1   MSDVELDHEYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHA 58

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ AL + G   +       T YVTLEPC        CA  ++   I RVV    D    
Sbjct: 59  EIMALRQGGLVLQNYRLLDTTLYVTLEPC------VMCAGAMVHSRIGRVVFGARDAKTG 112

Query: 111 VSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEK 148
            +G  +  L   G+     I++ ++  E    L  +   + ++
Sbjct: 113 AAGSLIDVLHHPGMNHRVDIIEGVLRDECATLLSDFFRMRRQE 155


>gi|260581733|ref|ZP_05849530.1| ComE operon protein 2 [Haemophilus influenzae NT127]
 gi|319897607|ref|YP_004135804.1| tRNA-specific adenosine deaminase [Haemophilus influenzae F3031]
 gi|260095326|gb|EEW79217.1| ComE operon protein 2 [Haemophilus influenzae NT127]
 gi|317433113|emb|CBY81487.1| tRNA-specific adenosine deaminase [Haemophilus influenzae F3031]
          Length = 173

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 61/174 (35%), Gaps = 23/174 (13%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVT----AYGGCPHAEVQ 58
           S FD + M  AL  +     L      V  ++V D   +IG G            HAE+ 
Sbjct: 8   SEFDEKMMRYALELADKAEAL--GEIPVGAVLVDDARNIIGEGWNLSIVQSDPTAHAEII 65

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL    +  +      +T YVTLEPC        CA  I+   I+R+V    D      G
Sbjct: 66  ALRNGAKNIQNYRLLNSTLYVTLEPC------TMCAGAILHSRIKRLVFGASDYKTGAIG 119

Query: 114 RGLQ-----WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
                     ++    I   ++  E    L  +  ++ E++      +    D 
Sbjct: 120 SRFHFFDDYKMNHTLEITSGVLAEECSQKLSTFFQKRREEKKIEKALLKSLSDK 173


>gi|291482388|dbj|BAI83463.1| hypothetical protein BSNT_00036 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 161

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
           + D  +M  A++ ++           +  ++V +  +I R      T      HAE+  +
Sbjct: 2   TQDELYMKEAIKEAKKAE--EKGEVPIGAVLVVNDEIIARAHNLRETEQRSIAHAEMLVI 59

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA +        GAT YVTLEPC      P CA  ++   + +VV    DP    SG  
Sbjct: 60  DEACKALGTWRLEGATLYVTLEPC------PMCAGAVVLSRVEKVVFGAFDPKGGCSGTL 113

Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
           +  L       +  +V  ++E E    L A+ 
Sbjct: 114 MNLLQEERFNHQAEVVSGVLEEECGGMLSAFF 145


>gi|330443784|ref|YP_004376770.1| cytidine/deoxycytidylate deaminase family protein [Chlamydophila
           pecorum E58]
 gi|328806894|gb|AEB41067.1| cytidine/deoxycytidylate deaminase family protein [Chlamydophila
           pecorum E58]
          Length = 156

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 55/147 (37%), Gaps = 21/147 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
            FM+ AL+ +R     +     V C++VKD  +I RG  +         HAE+  +  A 
Sbjct: 8   FFMNEALKEARKA--YSQDEVPVGCVLVKDDKIIARGHNSVEKLQDPTAHAEILCIGAAA 65

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           E          T Y TLEPC        CA  I    I RVV    D  +   G  +   
Sbjct: 66  EFVQNWRLVNTTLYCTLEPCLM------CAGAIQLARISRVVWGAPDLRLGACGSWINVF 119

Query: 120 SQ----KGIIVDRMMESEGKIFLHAYL 142
           +Q      +   ++   E +  +  + 
Sbjct: 120 AQKHPFHTVECSKIYCEESERLMKQFF 146


>gi|238882595|gb|EEQ46233.1| DRAP deaminase [Candida albicans WO-1]
          Length = 589

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 12/137 (8%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQAL-----E 61
            +FM  A+  +    G T T  +V C++V +G VI  G +    G  HAE  AL     +
Sbjct: 438 RKFMEMAIEEAEK-CGETQTQFNVGCVLVHNGQVISTGHSRELPGNTHAEQCALEKYFSK 496

Query: 62  EAGEE--ARGATAYVTLEPCS-HYGRSPPCAQFIIECG-IRRVVVCVDDPDVR-VSGRGL 116
             GE     G   + ++EPCS     + PC   I++   I+   V V +PD+   +    
Sbjct: 497 NGGEREVPAGTEIFTSMEPCSLRLSGNLPCVDRILQTKNIKTCFVGVLEPDIFVKNNSSY 556

Query: 117 QWLSQKGIIVDRMMESE 133
           + L   G+    +   E
Sbjct: 557 KKLLDHGVEYIHIPGYE 573


>gi|268318039|ref|YP_003291758.1| CMP/dCMP deaminase zinc-binding protein [Rhodothermus marinus DSM
           4252]
 gi|262335573|gb|ACY49370.1| CMP/dCMP deaminase zinc-binding protein [Rhodothermus marinus DSM
           4252]
          Length = 158

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 57/150 (38%), Gaps = 21/150 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
            R+M AALR +            V  ++VKD  ++GRG            HAE+ A+  A
Sbjct: 11  RRWMEAALREAEQA--FEEGEVPVGAVVVKDDRIVGRGHNCVEQLKDPTAHAEMLAITAA 68

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                 +  RG T YVTLEPC      P CA  I+   + RVV    D     +      
Sbjct: 69  CATLDTKYLRGCTLYVTLEPC------PMCAGAIVWARLDRVVFGAFDEKAGAASTLYNI 122

Query: 119 LSQ----KGIIVDRMMESEGKIFLHAYLTR 144
           L        + V   +E+E    L     R
Sbjct: 123 LQDPRLNHRVEVISGVEAERAAALLQRFFR 152


>gi|158314624|ref|YP_001507132.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EAN1pec]
 gi|158110029|gb|ABW12226.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EAN1pec]
          Length = 150

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 62/138 (44%), Gaps = 9/138 (6%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT-AYGGCPHAEVQ 58
           MP    D  +M+ A+  +      T    SV  +IV  +   I  G +       HAE  
Sbjct: 1   MPQLD-DHHWMTRAIELAHRCPPATGAY-SVGAVIVDENNEEIAFGFSREVDDAVHAEES 58

Query: 59  ALEE---AGEEARGATAYVTLEPCSHYGRSPP-CAQFIIECGIRRVVVCVDDPDVRVS-G 113
           AL +   A      AT Y TLEPCS     P  C Q I+E  I RVV+   +P + V+  
Sbjct: 59  ALAKIDPADPRLATATIYSTLEPCSQRKSRPRTCTQLILEAKIPRVVIAWREPSLFVADC 118

Query: 114 RGLQWLSQKGIIVDRMME 131
           +G + L+Q G+ V  + E
Sbjct: 119 QGYELLTQAGVTVAELPE 136


>gi|68482658|ref|XP_714726.1| hypothetical protein CaO19.10687 [Candida albicans SC5314]
 gi|68482929|ref|XP_714595.1| hypothetical protein CaO19.3177 [Candida albicans SC5314]
 gi|46436176|gb|EAK95543.1| hypothetical protein CaO19.3177 [Candida albicans SC5314]
 gi|46436316|gb|EAK95680.1| hypothetical protein CaO19.10687 [Candida albicans SC5314]
          Length = 589

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 12/137 (8%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQAL-----E 61
            +FM  A+  +    G T T  +V C++V +G VI  G +    G  HAE  AL     +
Sbjct: 438 RKFMEMAIEEAEK-CGETQTQFNVGCVLVHNGQVISTGHSRELPGNTHAEQCALEKYFSK 496

Query: 62  EAGEE--ARGATAYVTLEPCS-HYGRSPPCAQFIIECG-IRRVVVCVDDPDVR-VSGRGL 116
             GE     G   + ++EPCS     + PC   I++   I+   V V +PD+   +    
Sbjct: 497 NGGEREVPAGTEIFTSMEPCSLRLSGNLPCVDRILQTKNIKTCFVGVLEPDIFVKNNSSY 556

Query: 117 QWLSQKGIIVDRMMESE 133
           + L   G+    +   E
Sbjct: 557 KKLLDHGVEYIHIPGYE 573


>gi|311694940|gb|ADP97813.1| cytidine/deoxycytidylate deaminase family protein [marine bacterium
           HP15]
          Length = 167

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 50/127 (39%), Gaps = 17/127 (13%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
           +  D R+M+ AL+ +            V  ++V DG  IG G  A         HAE++A
Sbjct: 5   TPEDERWMNRALQLA--GEAAAKGEVPVGAVVVLDGKEIGAGFNAPISGCDPTAHAEIRA 62

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           L +A           AT YVTLEPC        C   I+   I R+V    +P       
Sbjct: 63  LRDAAARVGNYRLPDATLYVTLEPC------TMCVGAIVHGRISRLVYGAREPKAGAIES 116

Query: 115 GLQWLSQ 121
             + L +
Sbjct: 117 ARRTLEE 123


>gi|18309013|ref|NP_560947.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens str. 13]
 gi|18143688|dbj|BAB79737.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 143

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 17/122 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
            +S AL  +            V  +IVKDG +I R      T      HAE+ A+ EA  
Sbjct: 1   MLSLALEEAEKAR--EKGEVPVGAVIVKDGEIIARAHNLKETLKDPTAHAEILAIREACN 58

Query: 66  E-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           +       G   YVTLEPC      P CA  I++  + ++ +   D     +G  +  L 
Sbjct: 59  KLNNWRLHGCEMYVTLEPC------PMCAGAILQSRLSKIYIGTFDDTTGAAGSVVNILQ 112

Query: 121 QK 122
             
Sbjct: 113 NH 114


>gi|308171910|ref|YP_003918615.1| tRNA specific adenosine deaminase [Bacillus amyloliquefaciens DSM
           7]
 gi|307604774|emb|CBI41145.1| tRNA specific adenosine deaminase [Bacillus amyloliquefaciens DSM
           7]
 gi|328551718|gb|AEB22210.1| tRNA specific adenosine deaminase [Bacillus amyloliquefaciens
           TA208]
 gi|328909978|gb|AEB61574.1| tRNA specific adenosine deaminase [Bacillus amyloliquefaciens LL3]
          Length = 160

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 58/150 (38%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  +M  A++ ++           +  ++V    ++ R      T      HAE+ A++E
Sbjct: 3   DEYYMREAIKEAKKAE--AKGEVPIGAVLVLHDEIVARAHNLRETEQRSLAHAEMLAIDE 60

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A           A  YVTLEPC      P CA  ++   + +VV    DP    +G  + 
Sbjct: 61  ACRKLGTWRLEDAVLYVTLEPC------PMCAGAVVLSRVDKVVFGAFDPKGGCTGTLMN 114

Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYL 142
            L       +  +V  ++E E    L A+ 
Sbjct: 115 LLQEERFNHQAEVVSGVLEEECGEMLSAFF 144


>gi|222152093|ref|YP_002561253.1| hypothetical protein MCCL_1850 [Macrococcus caseolyticus JCSC5402]
 gi|222121222|dbj|BAH18557.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 161

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 55/149 (36%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  A+  ++    +      +  +++K G VIGRG            HAEV A+ EA
Sbjct: 4   EIFMQMAIDEAKKAYKINEV--PIGAVVIKHGEVIGRGHNLRESSQNPLMHAEVVAINEA 61

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            +            YVTLEPC        C+  I+   I  VV    D     SG  +  
Sbjct: 62  SKNIGSWRLEECVLYVTLEPC------VMCSGAIVMSRIPTVVYGAHDAKGGCSGSLMNL 115

Query: 119 L-----SQKGIIVDRMMESEGKIFLHAYL 142
           L     + +  ++  +   E  + L  + 
Sbjct: 116 LHESRFNHQATVIAGIKHEECSMLLKDFF 144


>gi|117919687|ref|YP_868879.1| tRNA-adenosine deaminase [Shewanella sp. ANA-3]
 gi|117612019|gb|ABK47473.1| tRNA-adenosine deaminase [Shewanella sp. ANA-3]
          Length = 222

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 55/152 (36%), Gaps = 22/152 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
           D  +M  A+  +       +    V  ++VK G  I  G       +  C HAE+Q L  
Sbjct: 59  DEHWMRVAMSMAEKAE--AAGEVPVGAVLVKGGQQIAAGYNLSISEHDPCAHAEIQCLRA 116

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AG+          T YVTLEPC+       CA  ++   I RVV    D     +G  L 
Sbjct: 117 AGQTIENYRLLDTTLYVTLEPCAM------CAGAMVHSRIARVVFGAKDEKTGAAGTVLN 170

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTR 144
            L          +   ++  +    L  +  R
Sbjct: 171 LLQHPAFNHQVEVTSGVLAQDCADQLSRFFKR 202


>gi|168210507|ref|ZP_02636132.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens B str. ATCC 3626]
 gi|170711409|gb|EDT23591.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens B str. ATCC 3626]
          Length = 143

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 17/122 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
            +S AL  +            V  +IVKDG +I R      T      HAE+ A+ EA  
Sbjct: 1   MLSLALEEAEKAR--EKGEVPVGAVIVKDGEIIARAHNLKETLKDPTAHAEILAIREACN 58

Query: 66  E-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           +       G   YVTLEPC      P CA  I++  + ++ +   D     +G  +  L 
Sbjct: 59  KLNNWRLNGCEMYVTLEPC------PMCAGAILQSRLSKIYIGTFDDTTGAAGSVVNILQ 112

Query: 121 QK 122
             
Sbjct: 113 NH 114


>gi|304410027|ref|ZP_07391646.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica OS183]
 gi|307302260|ref|ZP_07582018.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica BA175]
 gi|304351436|gb|EFM15835.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica OS183]
 gi|306914298|gb|EFN44719.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica BA175]
          Length = 175

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 53/152 (34%), Gaps = 22/152 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
           D  +M  A+  +            V  ++VKDG  I  G       +    HAE+  L E
Sbjct: 13  DEHWMQVAMLMAENAE--AEGEVPVGAVLVKDGQQIATGYNLSISQHDPSAHAEILCLRE 70

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AG          AT YVTLEPC+       CA  ++   I RVV    D     +G  + 
Sbjct: 71  AGRLVENYRLLDATLYVTLEPCAM------CAGAMVHSRIARVVFGARDEKTGAAGTVVN 124

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTR 144
            L          +   ++       L  +  R
Sbjct: 125 LLQHPAFNHQVEVTSGILADACSAQLSRFFKR 156


>gi|293399195|ref|ZP_06643360.1| cytosine deaminase [Neisseria gonorrhoeae F62]
 gi|291610609|gb|EFF39719.1| cytosine deaminase [Neisseria gonorrhoeae F62]
          Length = 239

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 60/156 (38%), Gaps = 22/156 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P       FM  ALR +            V  +IV DG +I               HAE+
Sbjct: 87  PPQEEMGYFMREALRQAEQSA--ADGEIPVGAVIVSDGKIIASAHNTCIADCNVSRHAEI 144

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+    +P    +
Sbjct: 145 NALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGATEPKTGAA 198

Query: 113 GRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLT 143
           G  +       L+    I   +++ E +  L  +  
Sbjct: 199 GSIVNLFADKRLNTHTAIRGGILQEECRAVLSRFFQ 234


>gi|332754174|gb|EGJ84543.1| tRNA-specific adenosine deaminase [Shigella flexneri K-671]
          Length = 156

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 21/164 (12%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEE 66
           M  AL  ++           V  ++V +  VIG G     G      HAE+ AL + G  
Sbjct: 1   MRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLV 58

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            +      AT YVTLEPC        CA  +I   I RVV    D     +G  +  L  
Sbjct: 59  MQNYRLIDATLYVTLEPC------VMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHH 112

Query: 122 KG----IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
            G    + +   + ++    L +   R   +      K   S D
Sbjct: 113 PGMNHRVEITEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD 156


>gi|332800258|ref|YP_004461757.1| CMP/dCMP deaminase zinc-binding protein [Tepidanaerobacter sp. Re1]
 gi|332697993|gb|AEE92450.1| CMP/dCMP deaminase zinc-binding protein [Tepidanaerobacter sp. Re1]
          Length = 160

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 61/160 (38%), Gaps = 25/160 (15%)

Query: 1   MPVSSF---DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCP 53
           MP   +   D  FM  A++ ++  + +      +  +IVK   VI R      T      
Sbjct: 1   MPTLEYQKDDFFFMRQAIQEAKRAMEIDEV--PIGAVIVKADEVIARAHNLRETLQDATA 58

Query: 54  HAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+ A+ +A E        G T YVTLEPC      P CA  +I   + R+V    DP 
Sbjct: 59  HAELLAIRKACEVLGTWRLEGCTLYVTLEPC------PMCAGAVILSRVDRLVFGAKDPK 112

Query: 109 VRVSGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLT 143
               G  +        + +  I   +M  E    L  +  
Sbjct: 113 GGACGSLMNLPADERFNHRPKIAAGIMADECGNILKKFFQ 152


>gi|223939608|ref|ZP_03631483.1| CMP/dCMP deaminase zinc-binding [bacterium Ellin514]
 gi|223891766|gb|EEF58252.1| CMP/dCMP deaminase zinc-binding [bacterium Ellin514]
          Length = 168

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 57/150 (38%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  FM  ALR +            +  +IV++G +I R      T      HAE+ A+ +
Sbjct: 12  DNYFMGEALRQAVKA--YDREEVPIGAVIVREGRIIARAFNQVETLKDATAHAEMLAITQ 69

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A            T YVT EPC      P CA  I+   + RVV  + DP    +G  + 
Sbjct: 70  AEAAVGDWRLNECTLYVTKEPC------PMCAGAIVHVRLSRVVFGLSDPKGGGAGGAMN 123

Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYL 142
            L       +  I   + E E +  L  + 
Sbjct: 124 LLQFPTLNHRAEITHGVREQECRSLLQQFF 153


>gi|315125849|ref|YP_004067852.1| tRNA-specific adenosine deaminase [Pseudoalteromonas sp. SM9913]
 gi|315014363|gb|ADT67701.1| tRNA-specific adenosine deaminase [Pseudoalteromonas sp. SM9913]
          Length = 168

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 67/173 (38%), Gaps = 22/173 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M     D  +M  AL +++    L      V  +IVKD  +I  G     T      HAE
Sbjct: 1   MTEPFDDQYWMEQALVYAKQAEQLDE--IPVGAIIVKDNQLISAGYNRSITDNDPSAHAE 58

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ EAG+          T YVTLEPCS       CA  ++   I+R+V    D     
Sbjct: 59  MIAVREAGKVLNNYRLIDCTLYVTLEPCSM------CAGLLVHSRIKRLVFGAADAKTGS 112

Query: 112 SGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
           +G  +  L       +  I   ++E++    + ++  R+  +          S
Sbjct: 113 AGSIMNLLQEPRLNHQVEITGGVLETQCAETISSFFKRRRAQIKAAKQAARNS 165


>gi|302529655|ref|ZP_07281997.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Streptomyces
           sp. AA4]
 gi|302438550|gb|EFL10366.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Streptomyces
           sp. AA4]
          Length = 270

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 87/244 (35%), Gaps = 42/244 (17%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ-SDAILVGIGTVLAD-----D 204
            + +    S D  I      S  ++    +  V+ L    +D +LVG GT +A+      
Sbjct: 28  WLAVNFVSSADGGI-TIDGRSGGLSTPADRI-VYRLGNDLADVLLVGAGTAMAEGFEGLR 85

Query: 205 P-ELTC---RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
           P E T    R +GL   +P+ ++      L  D+ +I  AL+  +++ +   DP L  A+
Sbjct: 86  PDEKTAERRRRHGLAPIAPIAVV-STGRSLPPDAPVITKALVPTIVVTSAATDPELREAW 144

Query: 261 RKKNINIIYCDC-----------------------------RDLKKLLTILVGRGVTSLL 291
                +++                                  DL+  +  L  RG+  + 
Sbjct: 145 ASAGADVLIAGTGDPTLHEATGDPALHADPEDQRPRPRHGDVDLRAAVDELARRGLRRID 204

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
            EGG  +  S + + +VD + L  + ++I        +      +    +      + + 
Sbjct: 205 CEGGPHLFASLLAAGVVDELRLTVAPMLIAGDAPRVAMGAAIDPQQLELLSALVDDNSLL 264

Query: 352 LEYI 355
           L Y 
Sbjct: 265 LRYR 268


>gi|197264537|ref|ZP_03164611.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205356928|ref|ZP_02343159.2| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|197242792|gb|EDY25412.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205325427|gb|EDZ13266.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 172

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 61/163 (37%), Gaps = 23/163 (14%)

Query: 1   MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
           M     D   +M  AL  ++           V  ++V +  VIG G     G      HA
Sbjct: 1   MSDVELDHEYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHA 58

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ AL + G   +       T YVTLEPC        CA  ++   I RVV    D    
Sbjct: 59  EIMALRQGGLVLQNYRLLDTTLYVTLEPC------VMCAGAMVHSRIGRVVFGARDAKTG 112

Query: 111 VSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEK 148
            +G  +  L   G+     I++ ++  E    L  +   + ++
Sbjct: 113 AAGSLIDVLHHPGMNHRVEIIEGVLRDECATLLSDFFRMRRQE 155


>gi|71902073|ref|ZP_00684112.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Xylella
           fastidiosa Ann-1]
 gi|71728165|gb|EAO30357.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Xylella
           fastidiosa Ann-1]
          Length = 203

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 60/164 (36%), Gaps = 22/164 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----TAYGGCPHAE 56
           PV      +M  AL  +          P V  +++  +G ++G G     T++    HAE
Sbjct: 44  PVLPEHTHWMRHALTLAHRAATEFDEIP-VGAVLISPEGTLLGEGCNYNITSHDPSAHAE 102

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL  AG + R     G T YVTLEPC        CA  II   I  ++    DP    
Sbjct: 103 IMALRAAGHQLRNHRMPGCTLYVTLEPCLM------CAMAIIHARIAHLIYAATDPKTGA 156

Query: 112 SGRGLQWL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
            G     L     +    +   ++  E    L  Y   +  +  
Sbjct: 157 CGSTFDILNDPRHNHHVHVYGGLLAEEASRRLTNYFRTKRGQPP 200


>gi|329298459|ref|ZP_08255795.1| CMP/dCMP deaminase zinc-binding protein [Plautia stali symbiont]
          Length = 164

 Score = 86.5 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 58/158 (36%), Gaps = 22/158 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           D  +M  AL  +R           V  ++V+   VIG G            HAE+ AL +
Sbjct: 6   DEYWMRHALELARRAW--EQGEVPVGAVLVQGDRVIGEGWNRPISQCDPTAHAEIMALRQ 63

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            G+          T YVTLEPC        CA  ++   I R+V    D     +G  L 
Sbjct: 64  GGKVIDNYRLLDTTLYVTLEPC------VMCAGAMVHSRITRLVYGAKDEKTGAAGSLLD 117

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRS 150
            +   G+     I   ++  E    L  +   + E++ 
Sbjct: 118 VIGHPGMNHQIEIAHGVLAGECATLLSDFFRMRREQKR 155


>gi|153952715|ref|YP_001393480.1| hypothetical protein CKL_0054 [Clostridium kluyveri DSM 555]
 gi|219853386|ref|YP_002470508.1| hypothetical protein CKR_0043 [Clostridium kluyveri NBRC 12016]
 gi|146345596|gb|EDK32132.1| TadA [Clostridium kluyveri DSM 555]
 gi|219567110|dbj|BAH05094.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 145

 Score = 86.5 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 21/146 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA-- 63
           FM  A++ +   + L      V  ++VK+  +I R      T      HAE+ A+  A  
Sbjct: 4   FMFEAIKQAEMALQL--GEVPVGAVVVKNNNIISRAYNLKETLKDSTAHAEILAIRSASK 61

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                  +  + YVTLEPC      P CA  I++C I R+ +   DP +   G  +  L 
Sbjct: 62  VVKNWRLKDCSMYVTLEPC------PMCAGAILQCRISRLYIGTFDPVMGACGSVVNILQ 115

Query: 121 ----QKGIIVDRMMESEGKIFLHAYL 142
                  I +  +  +E    L  + 
Sbjct: 116 NNFLNHWIDIQWLYNNECSNMLKKFF 141


>gi|227112728|ref|ZP_03826384.1| tRNA-specific adenosine deaminase [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 168

 Score = 86.5 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 55/150 (36%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M  AL  ++           V  ++V D   IG G     G      HAE+ AL +
Sbjct: 7   DEYWMRHALMLAQRAQ--DEGEVPVGAVLVLDNEAIGEGWNRPIGHHDPTAHAEIMALRQ 64

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            G+  +       T YVTLEPC        CA  ++   I R+V    D     +G  + 
Sbjct: 65  GGQVLQNYRLLETTLYVTLEPCIM------CAGAMVHSRIGRLVYGASDEKTGAAGSLVD 118

Query: 118 WLSQKG-----IIVDRMMESEGKIFLHAYL 142
            L   G     +I   ++  E    L  + 
Sbjct: 119 ILRHPGMNHQIVIESGILADECSATLSTFF 148


>gi|110798954|ref|YP_694504.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens ATCC 13124]
 gi|169343373|ref|ZP_02864377.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens C str. JGS1495]
 gi|182625368|ref|ZP_02953141.1| tRNA-specific adenosine deaminase [Clostridium perfringens D str.
           JGS1721]
 gi|110673601|gb|ABG82588.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens ATCC 13124]
 gi|169298459|gb|EDS80545.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens C str. JGS1495]
 gi|177909365|gb|EDT71817.1| tRNA-specific adenosine deaminase [Clostridium perfringens D str.
           JGS1721]
          Length = 143

 Score = 86.5 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 17/122 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
            +S AL  +            V  +IVKDG +I R      T      HAE+ A+ EA  
Sbjct: 1   MLSLALEEAEKAR--EKGEVPVGAVIVKDGEIIARAHNLKETLKDPTAHAEILAIREACN 58

Query: 66  E-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           +       G   YVTLEPC      P CA  I++  + ++ +   D     +G  +  L 
Sbjct: 59  KLNNWRLHGCEMYVTLEPC------PMCAGAILQSRLSKIYIGTFDDTTGAAGSVVNILQ 112

Query: 121 QK 122
             
Sbjct: 113 NH 114


>gi|289825514|ref|ZP_06544721.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 172

 Score = 86.5 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 60/163 (36%), Gaps = 23/163 (14%)

Query: 1   MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
           M     D   +M  AL  ++           V  ++V +  VIG G     G      HA
Sbjct: 1   MSDVELDHEYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHA 58

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ AL + G   +       T YVTLEPC        CA  ++   I RVV    D    
Sbjct: 59  EIMALRQGGLVLQNYRLLDTTLYVTLEPC------VMCAGAMVHSRIGRVVFGARDAKTG 112

Query: 111 VSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEK 148
            +   +  L   G+     I++ ++  E    L  +   + ++
Sbjct: 113 AARSLIDVLHHPGMNHRVEIIEGVLRDECATLLSDFFRMRRQE 155


>gi|289812274|ref|ZP_06542903.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino)uracil
           reductase [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 83

 Score = 86.5 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYL 334
           +  L  + + S+ VE G  +A + + + LVD +I+Y +  ++G           LE+   
Sbjct: 1   MMQLGRQQINSIWVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLAD 60

Query: 335 EKNFMCVRRDYFGSDVCLEYIG 356
              F      + G DVCL  + 
Sbjct: 61  APQFTFSEIRHVGPDVCLHMVS 82


>gi|293608246|ref|ZP_06690549.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828819|gb|EFF87181.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325122022|gb|ADY81545.1| tRNA-specific adenosine deaminase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 167

 Score = 86.5 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 42/125 (33%), Gaps = 18/125 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           D  +M  A   +            V  ++V    VIG G  A         HAE+QA+  
Sbjct: 6   DEYWMQLAYEQAELAAQQ--GEIPVGAVLVSQNRVIGSGYNAPITLLDPTAHAEIQAIRA 63

Query: 63  AGEE------ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           A             T YVTLEPC        C   ++   I+ VV    +P         
Sbjct: 64  ACSSLENYRLPEDTTLYVTLEPC------TMCVGALVHARIKHVVFGTPEPKAGSLVSAR 117

Query: 117 QWLSQ 121
           Q L Q
Sbjct: 118 QLLQQ 122


>gi|71275637|ref|ZP_00651922.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Xylella
           fastidiosa Dixon]
 gi|71897819|ref|ZP_00680045.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Xylella
           fastidiosa Ann-1]
 gi|71163528|gb|EAO13245.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Xylella
           fastidiosa Dixon]
 gi|71732374|gb|EAO34428.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Xylella
           fastidiosa Ann-1]
          Length = 203

 Score = 86.5 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 60/164 (36%), Gaps = 22/164 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----TAYGGCPHAE 56
           PV      +M  AL  +          P V  +++  +G ++G G     T++    HAE
Sbjct: 44  PVLPEHTHWMRHALTLAHRAATEFDEIP-VGAVLISPEGTLLGEGCNYNITSHDPSAHAE 102

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL  AG + R     G T YVTLEPC        CA  II   I  ++    DP    
Sbjct: 103 IMALRAAGHQLRNHRMPGCTLYVTLEPCLM------CAMAIIHARIAHLIYAAADPKTGA 156

Query: 112 SGRGLQWL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
            G     L     +    +   ++  E    L  Y   +  +  
Sbjct: 157 CGSTFDILNDPRHNHHVHVYGGLLAEEASRRLTNYFRTKRGQPP 200


>gi|108804267|ref|YP_644204.1| bifunctional deaminase-reductase-like protein [Rubrobacter
           xylanophilus DSM 9941]
 gi|108765510|gb|ABG04392.1| bifunctional deaminase-reductase-like protein [Rubrobacter
           xylanophilus DSM 9941]
          Length = 251

 Score = 86.5 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 64/147 (43%), Gaps = 9/147 (6%)

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
            +  + +LR+ +DA+L+G  T+ A+   L+    G +   P+  +L    ++ L+  ++ 
Sbjct: 66  DREVMRVLRSLADAVLIGANTLRAERMSLSS--EGRRAPEPLAAVLTSTGEVPLE-NLLD 122

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCD-----CRDLKKLLTILVG-RGVTSLLV 292
                 ++I+ E      A     K+  ++          DL++ L  L+   G   +L+
Sbjct: 123 LDRERTLVILPEPAASGAAAEKLSKSARLLPLPKATGGGVDLREALRALLEGFGARRVLI 182

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIV 319
           EGG  ++   I   L D + L  S  +
Sbjct: 183 EGGPRLSGEAIYRHLADELFLTVSPRI 209


>gi|194451068|ref|YP_002046630.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|195874089|ref|ZP_02700525.2| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|205357850|ref|ZP_02573795.2| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205359212|ref|ZP_02668290.2| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205360435|ref|ZP_02683354.2| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|213053109|ref|ZP_03345987.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213425288|ref|ZP_03358038.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213586542|ref|ZP_03368368.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213650179|ref|ZP_03380232.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213857782|ref|ZP_03384753.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|150421689|sp|Q8XGY4|TADA_SALTI RecName: Full=tRNA-specific adenosine deaminase
 gi|150421690|sp|Q7CQ08|TADA_SALTY RecName: Full=tRNA-specific adenosine deaminase
 gi|194409372|gb|ACF69591.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|195630767|gb|EDX49359.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|205329109|gb|EDZ15873.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205337614|gb|EDZ24378.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205349365|gb|EDZ35996.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|312913557|dbj|BAJ37531.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321222726|gb|EFX47797.1| tRNA-specific adenosine-34 deaminase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
          Length = 172

 Score = 86.5 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 61/163 (37%), Gaps = 23/163 (14%)

Query: 1   MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
           M     D   +M  AL  ++           V  ++V +  VIG G     G      HA
Sbjct: 1   MSDVELDHEYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHA 58

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ AL + G   +       T YVTLEPC        CA  ++   I RVV    D    
Sbjct: 59  EIMALRQGGLVLQNYRLLDTTLYVTLEPC------VMCAGAMVHSRIGRVVFGARDAKTG 112

Query: 111 VSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEK 148
            +G  +  L   G+     I++ ++  E    L  +   + ++
Sbjct: 113 AAGSLIDVLHHPGMNHRVEIIEGVLRDECATLLSDFFRMRRQE 155


>gi|239998824|ref|ZP_04718748.1| putative cytosine deaminase [Neisseria gonorrhoeae 35/02]
 gi|240014261|ref|ZP_04721174.1| putative cytosine deaminase [Neisseria gonorrhoeae DGI18]
 gi|240016697|ref|ZP_04723237.1| putative cytosine deaminase [Neisseria gonorrhoeae FA6140]
 gi|240121824|ref|ZP_04734786.1| putative cytosine deaminase [Neisseria gonorrhoeae PID24-1]
 gi|260440688|ref|ZP_05794504.1| putative cytosine deaminase [Neisseria gonorrhoeae DGI2]
 gi|268594667|ref|ZP_06128834.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae
           35/02]
 gi|291043998|ref|ZP_06569714.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae DGI2]
 gi|268548056|gb|EEZ43474.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae
           35/02]
 gi|291012461|gb|EFE04450.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae DGI2]
 gi|317164113|gb|ADV07654.1| putative cytosine deaminase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 239

 Score = 86.5 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 60/156 (38%), Gaps = 22/156 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P       FM  ALR +            V  +IV DG +I               HAE+
Sbjct: 87  PPQEEMGYFMREALRQAEQSA--ADGEIPVGAVIVSDGKIIASAHNTCIADCNVSRHAEI 144

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+    +P    +
Sbjct: 145 NALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGAAEPKTGAA 198

Query: 113 GRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLT 143
           G  +       L+    I   +++ E +  L  +  
Sbjct: 199 GSIVNLFADKRLNTHTAIRGGILQEECRAVLSRFFQ 234


>gi|194445660|ref|YP_002041831.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194404323|gb|ACF64545.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 172

 Score = 86.5 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 61/163 (37%), Gaps = 23/163 (14%)

Query: 1   MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
           M     D   +M  AL  ++           V  ++V +  VIG G     G      HA
Sbjct: 1   MSEVELDHEYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHA 58

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ AL + G   +       T YVTLEPC        CA  ++   I RVV    D    
Sbjct: 59  EIMALRQGGLVLQNYRLLDTTLYVTLEPC------VMCAGAMVHSRIGRVVFGARDAKTG 112

Query: 111 VSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEK 148
            +G  +  L   G+     I++ ++  E    L  +   + ++
Sbjct: 113 AAGSLIDVLHHPGMNHRVEIIEGVLRDECATLLSDFFRMRRQE 155


>gi|251791894|ref|YP_003006614.1| tRNA-specific adenosine deaminase [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533281|gb|ACS96527.1| tRNA-specific adenosine deaminase [Aggregatibacter aphrophilus
           NJ8700]
          Length = 174

 Score = 86.5 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 59/154 (38%), Gaps = 23/154 (14%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAEVQAL 60
            D +FM  AL  +     L      V  ++V  +G +IG G            HAE+ AL
Sbjct: 8   LDEKFMRHALMLADKAEAL--GEIPVGAVLVSAEGEIIGEGWNLSIIDSDPTAHAEIVAL 65

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            + G+  +      AT YVTLEPC        CA  I+   I+R+V    D      G  
Sbjct: 66  RQGGQRLQNYRLLNATLYVTLEPC------TMCAGAILHSRIKRLVFGAADYKTGAVGSR 119

Query: 116 LQ-----WLSQKGIIVDRMMESEGKIFLHAYLTR 144
                   ++    I   +++ E    L A+  +
Sbjct: 120 FHFFDDYKMNHVVEITGGVLQQECSEKLSAFFQK 153


>gi|259907686|ref|YP_002648042.1| tRNA-specific adenosine deaminase [Erwinia pyrifoliae Ep1/96]
 gi|224963308|emb|CAX54793.1| tRNA-specific adenosine deaminase [Erwinia pyrifoliae Ep1/96]
 gi|310764806|gb|ADP09756.1| tRNA-specific adenosine deaminase [Erwinia sp. Ejp617]
          Length = 166

 Score = 86.5 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 55/149 (36%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  ALR +R           V  ++V DG  IG G     G      HAE+ AL + 
Sbjct: 7   EYWMRHALRLARRAW--DEGEVPVGAVLVLDGQAIGEGWNRPIGQHDPTAHAEMMALRQG 64

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G+          T YVTLEPC        CA  +I   + R+V    D     +G  L  
Sbjct: 65  GKVIENYRLLDTTLYVTLEPC------VMCAGAMIHGRVGRLVYGARDAKTGAAGSLLDV 118

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYL 142
           L   G+     +   ++  E    L  + 
Sbjct: 119 LGHAGMNHHVQVDCGVLRDECAAMLSDFF 147


>gi|198245375|ref|YP_002216635.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197939891|gb|ACH77224.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
          Length = 172

 Score = 86.5 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 61/163 (37%), Gaps = 23/163 (14%)

Query: 1   MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
           M     D   +M  AL  ++           V  ++V +  VIG G     G      HA
Sbjct: 1   MSDVELDHEYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHA 58

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ AL + G   +       T YVTLEPC        CA  ++   I RVV    D    
Sbjct: 59  EIMALRQGGLVLQNYRLLDTTLYVTLEPC------VMCAGAMVHSRIGRVVFGARDAKTG 112

Query: 111 VSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEK 148
            +G  +  L   G+     I++ ++  E    L  +   + ++
Sbjct: 113 AAGSLIDVLHHPGMNHRVDIIEGVLRDECATLLSDFFRMRRQE 155


>gi|41408889|ref|NP_961725.1| hypothetical protein MAP2791 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41397248|gb|AAS05108.1| RibD [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 254

 Score = 86.5 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 75/214 (35%), Gaps = 17/214 (7%)

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           Y        + +      S D     A   S  + G   +   +LLR  +D I+VG GTV
Sbjct: 26  YDYPDGHAGTWVRANFIASVDGG-ATADGSSGAMGGPGDRFVFNLLRELADVIVVGAGTV 84

Query: 201 LADD---PELTCRLNGL------QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251
             +     +L              E  P+ I+      L+ D  +     + P+++    
Sbjct: 85  RIEGYSGAQLGVAQRQQRQARGQSEVPPLGIV-TKSGHLNRDMAVFTRTEVPPLVLTCAA 143

Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKL-----LTILVGRGVTSLLVEGGAAVAHSFINSR 306
                          ++ C   D +++     L +L  RG+  +L EGG  + +S +  +
Sbjct: 144 AADQTRRLLSGL-CEVLDCSAGDPERVDEATMLALLGKRGMRRILTEGGPTLLNSLLERQ 202

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
           L+D + L  +  ++G          G L     C
Sbjct: 203 LLDELCLTIAPYLVGGHARRIATGPGQLLTRMRC 236


>gi|289705117|ref|ZP_06501521.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Micrococcus luteus SK58]
 gi|289558145|gb|EFD51432.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Micrococcus luteus SK58]
          Length = 263

 Score = 86.5 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 74/210 (35%), Gaps = 21/210 (10%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA-------- 202
            + +    S D         +  +     +  + L R  +D +LVG GT+ A        
Sbjct: 33  WVRVVFIASADG-AATLDGRAGGLGSPADQRLLSLSRHDADVVLVGAGTIRAEGYEGALL 91

Query: 203 ---DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND---DPVL 256
              D      R        P   ++     L  +S     A + P I+ +      +P  
Sbjct: 92  SEEDR---RRRAEAGGPADPPVAVVSGSLDLDPESAFFTAAPVRPWILTSRAALAAEPER 148

Query: 257 ALAFR-KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
           A A   + ++  +  +  D + ++  L  RG   +  EGG  +  S   + LVD ++L  
Sbjct: 149 ATALAARADVLAVGQEHVDPQTVVGTLHARGARVVHCEGGPRLFGSLAAAGLVDEVLLTV 208

Query: 316 SQIVIG--EGGIPSPLEEGYLEKNFMCVRR 343
           + ++ G   G + +  +   L      V+ 
Sbjct: 209 APLLAGPAPGRVLTGEDGPGLPSRLQLVQV 238


>gi|56459694|ref|YP_154975.1| cytosine/adenosine deaminase putative [Idiomarina loihiensis L2TR]
 gi|56178704|gb|AAV81426.1| Cytosine/adenosine deaminase putative [Idiomarina loihiensis L2TR]
          Length = 150

 Score = 86.5 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE- 65
           M  AL  +       +    V  ++V D  ++G G            HAE QA+  AG+ 
Sbjct: 1   MQRALELAEQAQN--ADEVPVGAVLVMDDKIVGEGYNQVISLSDPSAHAEAQAIRSAGQA 58

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                   AT YVTLEPC+       CA  I    ++R+V    DP    +G  ++ ++ 
Sbjct: 59  IDNYRLVNATLYVTLEPCAM------CAGLITHARVKRLVFGATDPRTGATGTAIEVINH 112

Query: 122 KGI-----IVDRMMESEGKIFLHAYL 142
             +     +   ++  E    L  + 
Sbjct: 113 ASMNHKVDVESGVLAEECGDILRRFF 138


>gi|291085019|ref|ZP_06351792.2| tRNA-specific adenosine deaminase [Citrobacter youngae ATCC 29220]
 gi|291071670|gb|EFE09779.1| tRNA-specific adenosine deaminase [Citrobacter youngae ATCC 29220]
          Length = 154

 Score = 86.5 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 58/152 (38%), Gaps = 22/152 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEE 66
           M  AL  ++           V  ++V +  VIG G     G      HAE+ AL + G  
Sbjct: 1   MRHALTLAKRAWDERE--VPVGAVLVHNNRVIGEGWNRPIGHHDPTAHAEIMALRQGGLV 58

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            +      AT YVTLEPC        CA  ++   I RVV    D     +G  +  L  
Sbjct: 59  LQNYRLLDATLYVTLEPC------VMCAGAMVHSRIGRVVFGARDAKTGAAGSLMDVLHH 112

Query: 122 KGI-----IVDRMMESEGKIFLHAYLTRQVEK 148
            G+     + + ++  E    L  +   + ++
Sbjct: 113 PGMNHRVEVTEGVLRDECATLLSDFFRMRRQE 144


>gi|302390668|ref|YP_003826489.1| tRNA-adenosine deaminase [Thermosediminibacter oceani DSM 16646]
 gi|302201296|gb|ADL08866.1| tRNA-adenosine deaminase [Thermosediminibacter oceani DSM 16646]
          Length = 152

 Score = 86.5 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 55/149 (36%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ +R           V  +I  +G +I R             HAEV A++ A
Sbjct: 7   EFFMREALKEARKA--FEQDEVPVGAVIAYEGSIIARAHNLRERSQDATAHAEVLAIKAA 64

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            E        G + YVTLEPC      P CA  II   + RVV    DP    +G  +  
Sbjct: 65  CEAMGTWRLTGCSLYVTLEPC------PMCAGAIILARLDRVVFGAPDPKAGAAGSVVDL 118

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYL 142
                      +V  ++  E  I L  + 
Sbjct: 119 FKVERFNHHPEVVSGVLAEECGILLKDFF 147


>gi|326384411|ref|ZP_08206091.1| bifunctional deaminase-reductase domain-containing protein
           [Gordonia neofelifaecis NRRL B-59395]
 gi|326196756|gb|EGD53950.1| bifunctional deaminase-reductase domain-containing protein
           [Gordonia neofelifaecis NRRL B-59395]
          Length = 250

 Score = 86.5 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 77/223 (34%), Gaps = 18/223 (8%)

Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
           L         +R  I   +    D     A   S  +     +   HL RA +D I+VG 
Sbjct: 15  LERMYAFGASERPLIRANMVAGIDG-AATADGKSGSLGSDGDRQLFHLQRALADVIVVGA 73

Query: 198 GTVLAD-------DPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
            T +A+       DP     R    Q   P+ +++     L +D     TA    V+I T
Sbjct: 74  STAVAEGYHPPTVDPRYAAGRAERGQSAVPLLVLVSRSLNLPVDYP---TATHPDVLIAT 130

Query: 250 ENDDPVLAL-AFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
            ++ P  A  A       I+ C     D   L+  L  RG   +L EGG         + 
Sbjct: 131 CSEAPDEARSALLDAGAGIVDCGRSTVDPHALVAELAARGHRRVLCEGGPRFLAELAAAG 190

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           L+D + L  S IV G     +P        +     R   G D
Sbjct: 191 LLDELALTISPIVTGGD---APRIARGAVADAPMRVRHLLGDD 230


>gi|255320509|ref|ZP_05361690.1| tRNA-specific adenosine deaminase [Acinetobacter radioresistens
           SK82]
 gi|262378401|ref|ZP_06071558.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|255302481|gb|EET81717.1| tRNA-specific adenosine deaminase [Acinetobacter radioresistens
           SK82]
 gi|262299686|gb|EEY87598.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 163

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 18/126 (14%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
            D  +M  A   +   +  +     V  +IV +  VIG G       +    HAE+QAL 
Sbjct: 7   DDHYWMQLAYEQA--ALAASKGEVPVGAVIVSNNQVIGVGHNQPIFKHDPTAHAEIQALR 64

Query: 62  EAGEEAR------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           EA +  +        T YVTLEPC        C   +I   ++RVV    +P        
Sbjct: 65  EACQLTQNYRLPDDTTLYVTLEPC------TMCVGALIHARVQRVVFGATEPKAGSLVSA 118

Query: 116 LQWLSQ 121
            + L  
Sbjct: 119 RRLLES 124


>gi|19745357|ref|NP_606493.1| hypothetical protein spyM18_0196 [Streptococcus pyogenes MGAS8232]
 gi|73921072|sp|Q8P2R7|Y196_STRP8 RecName: Full=Uncharacterized deaminase spyM18_0196
 gi|19747462|gb|AAL96992.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
          Length = 159

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 51/131 (38%), Gaps = 18/131 (13%)

Query: 1   MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
           MP S      FM  AL+ +   +        + C+IVKDG +IGRG  A         HA
Sbjct: 1   MPYSLEEQTYFMQEALKEAEKSLQKAE--IPIGCVIVKDGEIIGRGHNAREESNQAIMHA 58

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+ EA            T +VT+EPC        C+  I    I  V+    +    
Sbjct: 59  EMMAINEANAHEGNWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVIYGASNQKFG 112

Query: 111 VSGRGLQWLSQ 121
            +    Q L+ 
Sbjct: 113 GADSLYQILTD 123


>gi|240112750|ref|ZP_04727240.1| putative cytosine deaminase [Neisseria gonorrhoeae MS11]
 gi|240115501|ref|ZP_04729563.1| putative cytosine deaminase [Neisseria gonorrhoeae PID18]
 gi|240123350|ref|ZP_04736306.1| putative cytosine deaminase [Neisseria gonorrhoeae PID332]
 gi|240128054|ref|ZP_04740715.1| putative cytosine deaminase [Neisseria gonorrhoeae SK-93-1035]
 gi|254493609|ref|ZP_05106780.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae 1291]
 gi|268598817|ref|ZP_06132984.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae MS11]
 gi|268601174|ref|ZP_06135341.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae
           PID18]
 gi|268681975|ref|ZP_06148837.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae
           PID332]
 gi|268686443|ref|ZP_06153305.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|226512649|gb|EEH61994.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae 1291]
 gi|268582948|gb|EEZ47624.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae MS11]
 gi|268585305|gb|EEZ49981.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae
           PID18]
 gi|268622259|gb|EEZ54659.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae
           PID332]
 gi|268626727|gb|EEZ59127.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 239

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 60/156 (38%), Gaps = 22/156 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P       FM  ALR +            V  +IV DG +I               HAE+
Sbjct: 87  PPQEEMGYFMREALRQAEQSA--ADGEIPVGAVIVSDGKIIASAHNTCIADCNVSRHAEI 144

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+    +P    +
Sbjct: 145 NALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGAAEPKTGAA 198

Query: 113 GRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLT 143
           G  +       L+    I   +++ E +  L  +  
Sbjct: 199 GSIVNLFADKRLNTHTAIRGGILQEECRAVLSRFFQ 234


>gi|139473043|ref|YP_001127758.1| deaminase [Streptococcus pyogenes str. Manfredo]
 gi|134271289|emb|CAM29505.1| putative deaminase [Streptococcus pyogenes str. Manfredo]
          Length = 157

 Score = 86.1 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 51/131 (38%), Gaps = 18/131 (13%)

Query: 1   MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
           MP S      FM  AL+ +   +        + C+IVKDG +IGRG  A         HA
Sbjct: 1   MPYSLEEQTYFMQEALKEAEKSLQKAE--IPIGCVIVKDGEIIGRGHNAREESNQAIMHA 58

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+ EA            T +VT+EPC        C+  I    I  V+    +    
Sbjct: 59  EIMAINEANAHEGNWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVIYGASNQKFG 112

Query: 111 VSGRGLQWLSQ 121
            +    Q L+ 
Sbjct: 113 GADSLYQILTD 123


>gi|282883358|ref|ZP_06291951.1| tRNA-specific adenosine deaminase [Peptoniphilus lacrimalis 315-B]
 gi|281296769|gb|EFA89272.1| tRNA-specific adenosine deaminase [Peptoniphilus lacrimalis 315-B]
          Length = 157

 Score = 86.1 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 47/127 (37%), Gaps = 21/127 (16%)

Query: 9   RFMSAALRFSRWHVGLTSTN--PSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
            FM  AL  ++    ++  N    V C+IVKD  +IG+G            HAE+ A+  
Sbjct: 10  YFMKKALELAK----ISYENFDVPVGCVIVKDKKIIGKGYNQKEKNKNPLCHAEINAINS 65

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +            YVTLEPC        C   II   I+ +     +         ++
Sbjct: 66  ACKNLNSYHLEDCDMYVTLEPCLM------CVGAIINARIKNLYFGAYNYRFGAVLSHVE 119

Query: 118 WLSQKGI 124
            L   G 
Sbjct: 120 LLKDGGF 126


>gi|294657495|ref|XP_459803.2| DEHA2E11374p [Debaryomyces hansenii CBS767]
 gi|199432736|emb|CAG88042.2| DEHA2E11374p [Debaryomyces hansenii]
          Length = 582

 Score = 86.1 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 10/139 (7%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEE 62
           +S   ++M  AL  +    G T T  +V  ++V +G V+  G +    G  HAE  ALE+
Sbjct: 430 TSPHRKYMELALEMANK-CGETQTQFNVGAVLVNNGEVLATGHSRELPGNTHAEQCALEK 488

Query: 63  ------AGEEARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVR-VSGR 114
                   E   G   Y T+EPCS     + PC   I+E  I+   V V +PD+   +  
Sbjct: 489 YFEQTGKREVPAGTEIYTTMEPCSLRLSGNLPCVDRILETNIKTCFVGVVEPDIFVKNNS 548

Query: 115 GLQWLSQKGIIVDRMMESE 133
           G   L+++ +    +   E
Sbjct: 549 GYTKLTERDVEYIHIPGYE 567


>gi|288575144|ref|ZP_06393501.1| CMP/dCMP deaminase zinc-binding [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288570885|gb|EFC92442.1| CMP/dCMP deaminase zinc-binding [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 162

 Score = 86.1 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 62/158 (39%), Gaps = 22/158 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           FM  A+  ++     +  +  V  ++V    VIGRG            HAE+ A+ +A +
Sbjct: 6   FMDLAIEEAKKAA--SEGDIPVGAVVVYKNDVIGRGRNLRRIDHDPTAHAEIVAIRQAAK 63

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-- 118
                   G   YVTLEPC      P CA  I++  I +VV    DP    SG       
Sbjct: 64  ARGSWNLSGCEIYVTLEPC------PMCAGAIVQSRIAKVVYGCTDPKAGASGTLYDITR 117

Query: 119 ---LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHIT 153
              L+ +  ++  + E   +  L  + +   +KR    
Sbjct: 118 DTRLNHRCEVIKGIEEDRCRNMLRDFFSECRKKRRKER 155


>gi|282918346|ref|ZP_06326083.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus C427]
 gi|282317480|gb|EFB47852.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus C427]
          Length = 156

 Score = 86.1 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 57/150 (38%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D  FM+ A+  ++    L      +  +I KD  VI R      T      HAE  A+E 
Sbjct: 4   DIYFMTLAIEEAKKAAQL--GEVPIGAIITKDDEVIARANNLRETLQQPTAHAEHIAIER 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +          T YVTLEPC        CA  I+   I RVV   DDP    SG  + 
Sbjct: 62  AAKVLGSWRLEDCTLYVTLEPC------VMCAGTIVMSRIPRVVYGADDPKGGCSGSLMN 115

Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYL 142
            L       + I+   +++      L  + 
Sbjct: 116 LLQQSNFNHRAIVDKGVLKEACSTLLTTFF 145


>gi|86740847|ref|YP_481247.1| CMP/dCMP deaminase, zinc-binding [Frankia sp. CcI3]
 gi|86567709|gb|ABD11518.1| CMP/dCMP deaminase, zinc-binding [Frankia sp. CcI3]
          Length = 150

 Score = 86.1 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 45/138 (32%), Positives = 63/138 (45%), Gaps = 9/138 (6%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT-AYGGCPHAEVQ 58
           MP    D R+M+ A+  +           SV  +IV K+   I  G +       HAE  
Sbjct: 1   MPQLD-DHRWMTRAIELAHRCPPAAGAY-SVGAVIVDKNNQEIAFGFSREVDDAVHAEES 58

Query: 59  ALEEAG---EEARGATAYVTLEPCSHYGRSPP-CAQFIIECGIRRVVVCVDDPDVRVS-G 113
           AL + G        AT Y TLEPCS     P  C Q I+E  I RVV+   +P + V+  
Sbjct: 59  ALAKIGPGDPRLATATIYSTLEPCSQRKSRPRTCTQLILEAKIPRVVIAWREPSLFVADC 118

Query: 114 RGLQWLSQKGIIVDRMME 131
           +G + L+Q G+ V  + E
Sbjct: 119 QGYELLTQAGVTVVELPE 136


>gi|319943546|ref|ZP_08017828.1| tRNA-specific adenosine deaminase [Lautropia mirabilis ATCC 51599]
 gi|319743361|gb|EFV95766.1| tRNA-specific adenosine deaminase [Lautropia mirabilis ATCC 51599]
          Length = 206

 Score = 86.1 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 62/175 (35%), Gaps = 22/175 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
             S  D   M  A+  +            V  ++VK G VI  G     G      HAE+
Sbjct: 16  SFSELDHAMMRLAMDQALNAQL--HGEVPVGAVLVKAGQVIATGYNHPIGSHDPTAHAEI 73

Query: 58  QALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           + L  A E+        +T YVTLEPC        C   ++   I RVV    DP   V 
Sbjct: 74  RTLRMAAEQLGNYRVGESTLYVTLEPCMM------CLGAMLHARISRVVFGAPDPKTGVC 127

Query: 113 GRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           G  L       L+ + ++   ++  E    L  +   +  +R      +   QD 
Sbjct: 128 GGVLDLPAEGRLNHQTVVQGGLLADECGKLLQRFFAERRAQRRADRAALRAQQDE 182


>gi|329666788|gb|AEB92736.1| cytosine/adenosine deaminase [Lactobacillus johnsonii DPC 6026]
          Length = 160

 Score = 86.1 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 18/123 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEE 62
            ++M  A   ++           +  ++V KDG VIG G            HAE+ A+ +
Sbjct: 8   EKYMHLAFEQAKKAE--EQGEVPIGAVVVDKDGNVIGEGYNRRELDEDATQHAEMIAIRQ 65

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++         + ++TLEPC      P C+  II   +  V     DP    +G  + 
Sbjct: 66  ACKKLNSWRLVDCSLFITLEPC------PMCSGAIINSRLAEVYYGAFDPKAGAAGSVID 119

Query: 118 WLS 120
              
Sbjct: 120 LFK 122


>gi|311070665|ref|YP_003975588.1| tRNA specific adenosine deaminase [Bacillus atrophaeus 1942]
 gi|310871182|gb|ADP34657.1| tRNA specific adenosine deaminase [Bacillus atrophaeus 1942]
          Length = 161

 Score = 86.1 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  +M  A++ ++    +      +  ++V +  ++ R      T      HAE+ A++E
Sbjct: 4   DEFYMLEAIKEAKKAEEI--GEVPIGAVLVMNDDIVARAHNLRETEQRSIAHAEMLAIDE 61

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A          GA+ YVTLEPC      P CA  ++   + RVV    DP    SG  + 
Sbjct: 62  ACRTLGTWRLEGASLYVTLEPC------PMCAGAVVLSRVDRVVFGAFDPKGGCSGTLMN 115

Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYL 142
            L       +  +V  ++E E    L  + 
Sbjct: 116 LLQEERFNHQAEVVSGVLEKECGQMLSDFF 145


>gi|262281785|ref|ZP_06059554.1| cytidine/deoxycytidylate deaminase [Streptococcus sp. 2_1_36FAA]
 gi|262262239|gb|EEY80936.1| cytidine/deoxycytidylate deaminase [Streptococcus sp. 2_1_36FAA]
          Length = 162

 Score = 86.1 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 23/163 (14%)

Query: 1   MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
           M  S  +   FM  AL+ +R  + L +    + C+IV+DG +IGRG  A         HA
Sbjct: 8   MNYSKEEKEYFMLEALKEAR--IALENDEIPIGCVIVRDGQIIGRGHNAREELQRAVMHA 65

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+EEA +          T +VT+EPC        C+  I    I  VV    +    
Sbjct: 66  EIMAIEEANQHENSWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVVYGASNQKFG 119

Query: 111 VSGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
            +G          L+ +  +   +++ E    +  +   + +K
Sbjct: 120 AAGSLYDILTDERLNHRVEVETGVLQEECAQIMQDFFRNRRQK 162


>gi|168217743|ref|ZP_02643368.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens NCTC 8239]
 gi|182380212|gb|EDT77691.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens NCTC 8239]
          Length = 143

 Score = 86.1 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 17/122 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
            +S AL  +            V  +IVK+G +I R      T      HAE+ A+ EA  
Sbjct: 1   MLSLALEEAEKAR--EKGEVPVGAVIVKNGEIIARAHNLKETLKDPTAHAEILAIREACN 58

Query: 66  E-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           +       G   YVTLEPC      P CA  I++  + ++ +   D     +G  +  L 
Sbjct: 59  KLNNWRLNGCEMYVTLEPC------PMCAGAILQSRLSKIYIGTFDDTTGAAGSVVNILQ 112

Query: 121 QK 122
             
Sbjct: 113 NH 114


>gi|283131328|dbj|BAI63333.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae
           subsp. equisimilis]
          Length = 183

 Score = 86.1 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 51/131 (38%), Gaps = 18/131 (13%)

Query: 1   MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
           MP S      FM  AL+ +   +        + C+IVKDG +IGRG  A         HA
Sbjct: 9   MPYSLEEQTYFMQEALKEAEKSLQKAE--IPIGCVIVKDGEIIGRGHNAREESNQAIMHA 66

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+ EA            T +VT+EPC        C+  I    I  V+    +    
Sbjct: 67  EMMAINEANAHEGNWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVIYGASNQKFG 120

Query: 111 VSGRGLQWLSQ 121
            +    Q L+ 
Sbjct: 121 GADSLYQILTD 131


>gi|254521455|ref|ZP_05133510.1| tRNA-specific adenosine deaminase [Stenotrophomonas sp. SKA14]
 gi|219719046|gb|EED37571.1| tRNA-specific adenosine deaminase [Stenotrophomonas sp. SKA14]
          Length = 174

 Score = 86.1 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 51/131 (38%), Gaps = 17/131 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAE 56
           PV   D  +M  AL  +          P V  ++V  DG ++G G      ++    HAE
Sbjct: 8   PVHDADEHWMRHALALAERAQREFDEIP-VGAVLVGADGQLLGEGWNLNIASHDPSAHAE 66

Query: 57  VQALEEAG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+   G         G+T YVTLEPC+       CA  I+   + R+V    DP    
Sbjct: 67  IVAMRVGGKVLSNHRLLGSTLYVTLEPCAM------CAMAIVHARVSRLVYGASDPKTGA 120

Query: 112 SGRGLQWLSQK 122
            G     L   
Sbjct: 121 CGSVFDLLGDA 131


>gi|52783876|ref|YP_089705.1| YaaJ [Bacillus licheniformis ATCC 14580]
 gi|52346378|gb|AAU39012.1| YaaJ [Bacillus licheniformis ATCC 14580]
          Length = 162

 Score = 86.1 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 60/158 (37%), Gaps = 23/158 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M ++  D  +M  A+  +R           +  ++V DG +I R      T      HAE
Sbjct: 1   MRMT-QDEFYMKEAVNEARKAE--EKGEVPIGAVLVLDGEIIARAHNLRETEQRSVAHAE 57

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +  +EEA           A  YVTLEPC      P CA   +   I +VV    DP    
Sbjct: 58  MLVIEEACRKLGTWRLERAVLYVTLEPC------PMCAGAAVLSRIDKVVFGASDPKGGC 111

Query: 112 SGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144
           +G  +  L       +  +V  +ME E    L  +  +
Sbjct: 112 AGTLMNLLQEERFNHQAEVVSGVMEEECGRMLSDFFRK 149


>gi|331265454|ref|YP_004325084.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           oralis Uo5]
 gi|326682126|emb|CBY99742.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           oralis Uo5]
          Length = 155

 Score = 86.1 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ +   + L      + C+IVKDG +IGRG  A         HAE+ A+E A
Sbjct: 9   ESFMREALKEAE--IALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIENA 66

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I +VV    +     +G     
Sbjct: 67  NLSEESWRLLDCTLFVTIEPC------VMCSGAIGLARIPKVVYGAKNQKFGAAGSLYDI 120

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   ++ESE    +  + 
Sbjct: 121 LTDERLNHRVEVETGVLESECAAIMQDFF 149


>gi|71909993|ref|YP_281543.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes MGAS5005]
 gi|60416281|sp|P68999|TADA_STRP1 RecName: Full=tRNA-specific adenosine deaminase
 gi|71852775|gb|AAZ50798.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes MGAS5005]
          Length = 171

 Score = 86.1 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 64/178 (35%), Gaps = 23/178 (12%)

Query: 1   MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
           MP S      FM  AL+ +   +        + C+IVKDG +IGRG  A         HA
Sbjct: 1   MPYSLEEQTYFMQEALKEAEKSLQKAE--IPIGCVIVKDGEIIGRGHNAREESNQAIMHA 58

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+ EA            T +VT+EPC        C+  I    I  V+    +    
Sbjct: 59  EMMAINEANAHEGNWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVIYGASNQKFG 112

Query: 111 VSGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163
                 Q      L+ +  +   ++ ++    +  +  +  E++      I    D  
Sbjct: 113 GVDSLYQILTDERLNHRVQVERGLLAADCANIMQTFFRQGRERKKIAKHLIKEQSDPF 170


>gi|304558173|gb|ADM40837.1| tRNA-specific adenosine-34 deaminase [Edwardsiella tarda FL6-60]
          Length = 170

 Score = 86.1 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 59/151 (39%), Gaps = 22/151 (14%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
            D+ +M  AL+ +            V  ++V +  VIG G     T +    HAE+ AL+
Sbjct: 5   DDSDWMRHALQLAEKARAQ--GEVPVGAVLVLNDRVIGEGWNRPITRHDPTAHAEIMALQ 62

Query: 62  EAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           + G   +      AT YVTLEPC        CA  ++   IRR+V    D     +G  L
Sbjct: 63  QGGAIMQNYRLLEATLYVTLEPC------VMCAGAMVHSRIRRLVYGAPDLKTGAAGSLL 116

Query: 117 QWLSQKGI-----IVDRMMESEGKIFLHAYL 142
             L   G+     +   ++       L  + 
Sbjct: 117 DVLGHPGMNHRIEVCGGVLADACAAQLSDFF 147


>gi|288921249|ref|ZP_06415533.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EUN1f]
 gi|288347339|gb|EFC81632.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EUN1f]
          Length = 150

 Score = 86.1 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/138 (32%), Positives = 65/138 (47%), Gaps = 9/138 (6%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT-AYGGCPHAEVQ 58
           MP    D R+M+ A+  +      T    SV  +IV  +   I  G +       HAE  
Sbjct: 1   MPQLD-DHRWMTRAIELAHRCPPATGAY-SVGAVIVDENNEEIAFGYSREVDDAVHAEES 58

Query: 59  ALEE-AGEEAR--GATAYVTLEPCSHYGRSPP-CAQFIIECGIRRVVVCVDDPDVRVS-G 113
           AL + A ++ R   AT Y TLEPCS     P  C Q I+  GI RVV+   +P + V+  
Sbjct: 59  ALAKIAPDDPRLATATIYSTLEPCSQRRSRPRTCTQLILAAGIPRVVIAWREPSLFVADC 118

Query: 114 RGLQWLSQKGIIVDRMME 131
           +G + L+  G+ V  + E
Sbjct: 119 QGCELLTAAGVTVVELPE 136


>gi|168206176|ref|ZP_02632181.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens E str. JGS1987]
 gi|170662306|gb|EDT14989.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens E str. JGS1987]
          Length = 143

 Score = 86.1 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 17/122 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
            +S AL  +            V  +IVK+G +I R      T      HAE+ A+ EA  
Sbjct: 1   MLSLALEEAEKAR--EKGEVPVGAVIVKNGEIIARAHNLKETLKDPTAHAEILAIREACN 58

Query: 66  E-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           +       G   YVTLEPC      P CA  I++  + ++ +   D     +G  +  L 
Sbjct: 59  KLNNWRLHGCEMYVTLEPC------PMCAGAILQSRLSKIYIGTFDDTTGAAGSVVNILQ 112

Query: 121 QK 122
             
Sbjct: 113 NH 114


>gi|88703683|ref|ZP_01101399.1| Cytidine and deoxycytidylate deaminase [Congregibacter litoralis
           KT71]
 gi|88702397|gb|EAQ99500.1| Cytidine and deoxycytidylate deaminase [Congregibacter litoralis
           KT71]
          Length = 167

 Score = 86.1 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 17/128 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
           ++     FM+ AL+ ++      +    V  L+V+DG ++G G  A  G      HAE+ 
Sbjct: 17  MTDVQPDFMARALQLAKEAA--EAGEVPVGALVVQDGRILGEGRNAQIGATDPTAHAEIN 74

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL  A          GAT YVTLEPCS       C   ++   I  +V    +P      
Sbjct: 75  ALRAAASALDNYRMPGATLYVTLEPCSM------CCGALVHARIGSLVFAAREPRAGAVV 128

Query: 114 RGLQWLSQ 121
                L++
Sbjct: 129 STRNLLNE 136


>gi|322613338|gb|EFY10280.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322633869|gb|EFY30608.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635475|gb|EFY32186.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322654860|gb|EFY51177.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322661716|gb|EFY57934.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669697|gb|EFY65843.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673296|gb|EFY69401.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322674915|gb|EFY71002.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682938|gb|EFY78956.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685599|gb|EFY81594.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323191973|gb|EFZ77211.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323211560|gb|EFZ96398.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215992|gb|EGA00724.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323225619|gb|EGA09846.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229337|gb|EGA13461.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235348|gb|EGA19432.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237466|gb|EGA21529.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323254025|gb|EGA37846.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323269662|gb|EGA53114.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 183

 Score = 86.1 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 22/155 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL + 
Sbjct: 20  EYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQG 77

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +       T YVTLEPC        CA  I+   I RVV    D     +G  +  
Sbjct: 78  GLVLQNYRLLDTTLYVTLEPC------VMCAGAIVHSRIGRVVFGARDAKTGAAGSLIDV 131

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYLTRQVEK 148
           L   G+     I++ ++  E    L  +   + ++
Sbjct: 132 LHHPGMNHRVDIIEGVLRDECATLLSDFFRMRRQE 166


>gi|110803707|ref|YP_697380.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens SM101]
 gi|110684208|gb|ABG87578.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens SM101]
          Length = 143

 Score = 86.1 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 17/122 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
            +S AL  +            V  +IVK+G +I R      T      HAE+ A+ EA  
Sbjct: 1   MLSLALEEAEKAR--EKGEVPVGAVIVKNGEIIARAHNLKETLKDPTAHAEILAIREACN 58

Query: 66  E-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           +       G   YVTLEPC      P CA  I++  + ++ +   D     +G  +  L 
Sbjct: 59  KLNNWRLHGCEMYVTLEPC------PMCAGAILQSRLSKIYIGTFDDTTGAAGSVVNILQ 112

Query: 121 QK 122
             
Sbjct: 113 NH 114


>gi|269138128|ref|YP_003294828.1| tRNA-specific adenosine deaminase [Edwardsiella tarda EIB202]
 gi|267983788|gb|ACY83617.1| tRNA-specific adenosine deaminase [Edwardsiella tarda EIB202]
          Length = 180

 Score = 86.1 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 59/151 (39%), Gaps = 22/151 (14%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
            D+ +M  AL+ +            V  ++V +  VIG G     T +    HAE+ AL+
Sbjct: 15  DDSDWMRHALQLAEKARAQ--GEVPVGAVLVLNDRVIGEGWNRPITRHDPTAHAEIMALQ 72

Query: 62  EAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           + G   +      AT YVTLEPC        CA  ++   IRR+V    D     +G  L
Sbjct: 73  QGGAIMQNYRLLEATLYVTLEPC------VMCAGAMVHSRIRRLVYGAPDLKTGAAGSLL 126

Query: 117 QWLSQKGI-----IVDRMMESEGKIFLHAYL 142
             L   G+     +   ++       L  + 
Sbjct: 127 DVLGHPGMNHRIEVCGGVLADACAAQLSDFF 157


>gi|268318938|ref|YP_003292594.1| hypothetical protein FI9785_445 [Lactobacillus johnsonii FI9785]
 gi|262397313|emb|CAX66327.1| conserved hypothetical proteins [Lactobacillus johnsonii FI9785]
          Length = 160

 Score = 86.1 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 18/123 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEE 62
            ++M  A   ++           +  ++V KDG VIG G            HAE+ A+ +
Sbjct: 8   EKYMHLAFEQAKKAE--EQGEVPIGAVVVDKDGNVIGEGYNRRELDEDATQHAEMIAIRQ 65

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++         + ++TLEPC      P C+  II   +  V     DP    +G  + 
Sbjct: 66  ACKKLNSWRLVDCSLFITLEPC------PMCSGAIINSRLAEVYYGAFDPKAGAAGSVID 119

Query: 118 WLS 120
              
Sbjct: 120 LFK 122


>gi|56412555|ref|YP_149630.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197361490|ref|YP_002141126.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56126812|gb|AAV76318.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197092966|emb|CAR58397.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|320087069|emb|CBY96838.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 183

 Score = 86.1 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 59/155 (38%), Gaps = 22/155 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL + 
Sbjct: 20  EYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQG 77

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +       T YVTLEPC        CA  ++   I RVV    D     +G  +  
Sbjct: 78  GLVLQNYRLLDTTLYVTLEPC------VMCAGAMVHSRIGRVVFGARDAKTGAAGSLIDV 131

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYLTRQVEK 148
           L   G+     I++ ++  E    L  +   + ++
Sbjct: 132 LHHPGMNHRVDIIEGVLRDECATLLSDFFRMRRQE 166


>gi|309800211|ref|ZP_07694392.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           infantis SK1302]
 gi|308116152|gb|EFO53647.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           infantis SK1302]
          Length = 166

 Score = 86.1 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 22/156 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ +   + L      + C+IVKDG +IGRG  A         HAE+ A+E A
Sbjct: 9   EVFMREALKEAE--IALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIENA 66

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I +VV    +     +G     
Sbjct: 67  NVREESWRLLDCTLFVTIEPC------VMCSGAIGLARIPKVVYGAKNQKFGAAGSLYDI 120

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
                L+ +  +   ++ESE    +  +   + +  
Sbjct: 121 LTDERLNHRVEVETGILESECAGIMQEFFRNRRKNN 156


>gi|94310515|ref|YP_583725.1| tRNA-adenosine deaminase [Cupriavidus metallidurans CH34]
 gi|93354367|gb|ABF08456.1| tRNA-specific adenosine deaminase [Cupriavidus metallidurans CH34]
          Length = 189

 Score = 86.1 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 59/153 (38%), Gaps = 22/153 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
           +  D  +M+AAL  +R      +    V  ++V D  +I RG            HAE+QA
Sbjct: 11  AERDRFYMAAALDEARLAE--AAGEVPVGAVVVWDDKIIARGHNLPIRSVDPSAHAEMQA 68

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           L  A +            YVTLEPC      P C+  I+   +R VV    DP    +G 
Sbjct: 69  LRAAAKVLGNYRMPECEIYVTLEPC------PMCSGAILHARLRHVVFGATDPKTGAAGS 122

Query: 115 GLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
            +       L+ +  +   +M  E    L  + 
Sbjct: 123 VVDLFAQATLNHQTTLTRGVMADECGQLLRDFF 155


>gi|288906283|ref|YP_003431505.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           gallolyticus UCN34]
 gi|306832338|ref|ZP_07465492.1| tRNA-specific adenosine deaminase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325979296|ref|YP_004289012.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288733009|emb|CBI14590.1| putative cytidine/deoxycytidylate deaminase family protein
           [Streptococcus gallolyticus UCN34]
 gi|304425777|gb|EFM28895.1| tRNA-specific adenosine deaminase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325179224|emb|CBZ49268.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 168

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 22/152 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ ++    L      + C+IVK+G++IGRG  A         HAE+ A+++A
Sbjct: 10  EYFMREALKEAQKS--LAKEEIPIGCVIVKNGVIIGRGHNAREERQKAILHAEIMAIDDA 67

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            E         +T +VT+EPC        C+  I    I +V+    +     +G     
Sbjct: 68  NENEGSWRLLDSTLFVTIEPC------VMCSGAIGLARIPQVIYGAANQKFGGAGSLYDI 121

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYLTRQ 145
                L+ +  +   ++E+E    +  +  + 
Sbjct: 122 LTDVRLNHRVEVETGILETECAAIMQDFFRKN 153


>gi|50555826|ref|XP_505321.1| YALI0F12199p [Yarrowia lipolytica]
 gi|49651191|emb|CAG78128.1| YALI0F12199p [Yarrowia lipolytica]
          Length = 605

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 55/135 (40%), Gaps = 10/135 (7%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQAL------ 60
            +FM  A+  +    G  S    V  ++VKDG V+  G +    G  HAE  AL      
Sbjct: 458 KKFMDLAVAEADKSEGTPSA-FCVGAVLVKDGQVLETGFSRELPGNTHAEQCALEKYFAK 516

Query: 61  EEAGEEARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVS-GRGLQW 118
               +       Y T+EPCS     + PC   I+   I+ V V V +PD  +     L  
Sbjct: 517 NNVSDVPENTVIYTTMEPCSERLSGNLPCVDRILNSSIKTVFVGVLEPDDFIKDNTSLAK 576

Query: 119 LSQKGIIVDRMMESE 133
           L + GI   ++   E
Sbjct: 577 LEKAGISYIQIPGYE 591


>gi|224033777|gb|ACN35964.1| unknown [Zea mays]
          Length = 168

 Score = 85.7 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 16/174 (9%)

Query: 187 RAQSDAILVGIGTVLADDPEL-TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
             + D +++     LA    L   R  G     P+ II+       L    +     +  
Sbjct: 1   MKEYDGVIISSD--LAKMSALPLSREAGTN--QPLCIIIAQGESSRLHIPSLSQEHASRA 56

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV---EGG---AAVA 299
           I++   D PV         + +      DL+ +L +L  RG+ S+LV   E G   A++ 
Sbjct: 57  IVLA--DSPVTV---EPAGVEVAVFRQIDLESILQLLAQRGLCSVLVDFREAGESFASLL 111

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           + F   +LV  +++      +   G+ +    G        +        V LE
Sbjct: 112 NDFQEDKLVQKVVVEVLPFWLASDGLSNLAFGGSQSFPLKNLELRDVNGSVLLE 165


>gi|326203924|ref|ZP_08193786.1| CMP/dCMP deaminase zinc-binding [Clostridium papyrosolvens DSM
           2782]
 gi|325986022|gb|EGD46856.1| CMP/dCMP deaminase zinc-binding [Clostridium papyrosolvens DSM
           2782]
          Length = 151

 Score = 85.7 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 22/151 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
            +FM  A++ ++       +   V  ++VKDG +I  G            HAE++AL++A
Sbjct: 6   EQFMQEAIKQAKEAYAKGES--PVGAIVVKDGELIASGCNQKEEKQDVTSHAEIEALKKA 63

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            ++       G   YVTLEPC+       CA  II+  I+ + +   D     +G  +  
Sbjct: 64  AKKLGTWRLDGCDMYVTLEPCAM------CAGAIIQSRIKTLYIGAMDKKAGAAGSVIDL 117

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTR 144
                   +  +V  +M  E    L  +  R
Sbjct: 118 FRVPQFNHRVDVVYGLMFEECGNILTEFFKR 148


>gi|285018425|ref|YP_003376136.1| cytidine / deoxycytidylate deaminase [Xanthomonas albilineans GPE
           PC73]
 gi|283473643|emb|CBA16146.1| putative cytidine / deoxycytidylate deaminase protein [Xanthomonas
           albilineans]
          Length = 165

 Score = 85.7 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 50/125 (40%), Gaps = 17/125 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAEVQA 59
           + D R+M  AL  +          P V  ++V  +  V+G G       +    HAE+ A
Sbjct: 9   ARDERWMRHALALAERAEREFDEIP-VGAVLVSAEDAVLGEGWNLNIAEHDPSAHAEIVA 67

Query: 60  LEEAG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           L +AG         G+T YVTLEPC+       CA  ++   +  +V    DP     G 
Sbjct: 68  LRQAGRRLGNHRLPGSTLYVTLEPCAM------CAMALVHARVAELVYAAADPKTGACGS 121

Query: 115 GLQWL 119
               L
Sbjct: 122 VFDLL 126


>gi|323340129|ref|ZP_08080393.1| tRNA-specific adenosine deaminase [Lactobacillus ruminis ATCC
           25644]
 gi|323092320|gb|EFZ34928.1| tRNA-specific adenosine deaminase [Lactobacillus ruminis ATCC
           25644]
          Length = 153

 Score = 85.7 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 44/119 (36%), Gaps = 17/119 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           FM  AL+ ++      +    + C+IV  G +IGRG            HAE+ A+ EA  
Sbjct: 9   FMKEALKEAKSA--YEAGEVPIGCVIVSGGRIIGRGHNRREELQDATEHAEMIAIREANR 66

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                       +VTLEPC      P C   II   I  V     D      G  +  L
Sbjct: 67  TLGSFRLENCALFVTLEPC------PMCTGAIINARIPEVFYGAPDEKAGTCGTLMNLL 119


>gi|37527198|ref|NP_930542.1| tRNA-specific adenosine deaminase [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786632|emb|CAE15694.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 173

 Score = 85.7 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 58/157 (36%), Gaps = 22/157 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
           D  +M  A+  +            V  ++V D  +I  G       +    HAE+  L +
Sbjct: 7   DEYWMQQAIERAIKAW--EQGEIPVGAILVADNKIISEGWNQSIIAHDPTAHAEIIVLRK 64

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            GE  R       T YVTLEPC        CA  +I   I+R+V    D      G  + 
Sbjct: 65  GGERLRNYRLINTTLYVTLEPC------TMCAGAMIHSRIQRLVYGASDMKTGAVGSLVD 118

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKR 149
            L   G+     I   ++  E    L A+  ++ ++ 
Sbjct: 119 ILRHPGMNHQIDITSGVLAEECSTMLSAFFKQRRQQH 155


>gi|333000872|gb|EGK20443.1| tRNA-specific adenosine deaminase [Shigella flexneri K-218]
          Length = 156

 Score = 85.7 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 58/164 (35%), Gaps = 21/164 (12%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEE 66
           M  AL  ++           V  ++V +  VIG G     G      HAE+ AL + G  
Sbjct: 1   MRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLV 58

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            +      AT YVTLEPC        CA  +I   I RVV    D      G  +  L  
Sbjct: 59  MQNYRLIDATLYVTLEPC------VMCAGAMIHSRIGRVVFGARDAKTGAVGSLMDVLHH 112

Query: 122 KG----IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
            G    + +   + ++    L +   R   +      K   S D
Sbjct: 113 PGMNHRVEITEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD 156


>gi|261820536|ref|YP_003258642.1| tRNA-specific adenosine deaminase [Pectobacterium wasabiae WPP163]
 gi|261604549|gb|ACX87035.1| CMP/dCMP deaminase zinc-binding protein [Pectobacterium wasabiae
           WPP163]
          Length = 168

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 55/150 (36%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M  AL  ++           V  ++V D   IG G     G      HAE+ AL +
Sbjct: 7   DEYWMRYALALAQRAQ--DEGEVPVGAVLVLDNKAIGEGWNRPIGHHDPTAHAEIMALRQ 64

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            G   +       T YVTLEPC        CA  +I   I R+V    D     +G  L 
Sbjct: 65  GGAVLQNYRLLETTLYVTLEPCIM------CAGAMIHGRIGRLVYGASDEKTGAAGSLLD 118

Query: 118 WLSQKG-----IIVDRMMESEGKIFLHAYL 142
            L   G     +I   ++  E    L A+ 
Sbjct: 119 ILRHPGMNHQIVIESGVLAGECSATLSAFF 148


>gi|237745836|ref|ZP_04576316.1| tRNA-specific adenosine deaminase [Oxalobacter formigenes HOxBLS]
 gi|229377187|gb|EEO27278.1| tRNA-specific adenosine deaminase [Oxalobacter formigenes HOxBLS]
          Length = 150

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 58/150 (38%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
           D  FM AAL  +   +   +    V  ++V +G VI  G       +    HAE+ AL  
Sbjct: 3   DDVFMRAALDQA--ALAKEAGEVPVGAVVVLEGRVIASGFNCPISRHDPTAHAEIMALRN 60

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +            YVTLEPCS       CA  +I   ++RVV    DP     G  + 
Sbjct: 61  AAKICGNYRLPACELYVTLEPCSM------CAGAMIHARLKRVVFGAFDPKTGACGSVVD 114

Query: 118 W-----LSQKGIIVDRMMESEGKIFLHAYL 142
                 L+    +   +++ E  + L  + 
Sbjct: 115 LFGQKELNHHTTVTSGVLQDECSLLLKMFF 144


>gi|218768019|ref|YP_002342531.1| putative cytosine deaminase [Neisseria meningitidis Z2491]
 gi|121052027|emb|CAM08336.1| putative cytosine deaminase [Neisseria meningitidis Z2491]
          Length = 239

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 60/156 (38%), Gaps = 22/156 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P       FM  ALR +            V  +IV DG +I               HAE+
Sbjct: 87  PPQEEMEHFMCEALRQAEQSA--ADGEIPVGAVIVSDGKIIASAHNTCIADCNVSRHAEI 144

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL +AG E +     G   Y+TLEPC+       CA  +I+  ++RV+    +P    +
Sbjct: 145 NALAQAGREMQNYRLDGCDIYITLEPCAM------CASALIQARVKRVIYGAGEPKTGAA 198

Query: 113 GRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLT 143
           G  +       L+    I   +++ E +  L  +  
Sbjct: 199 GSIVNLFADKRLNTHTAIRGGILQEECRAVLSRFFQ 234


>gi|311278508|ref|YP_003940739.1| CMP/dCMP deaminase zinc-binding protein [Enterobacter cloacae SCF1]
 gi|308747703|gb|ADO47455.1| CMP/dCMP deaminase zinc-binding protein [Enterobacter cloacae SCF1]
          Length = 165

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 54/149 (36%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  AL  ++           V  ++V    VIG G     G      HAE+ AL + 
Sbjct: 9   EYWMRHALGLAQRAW--DEGEVPVGAVLVYQNQVIGEGWNRPIGRHDPTAHAEIMALRQG 66

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +       T YVTLEPC        CA  ++   I RVV    D     +G  +  
Sbjct: 67  GLVLQNYRLIDTTLYVTLEPC------VMCAGAMVHSRIGRVVFGARDAKTGAAGSLMDV 120

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYL 142
           L   G+     + + ++  E    L  + 
Sbjct: 121 LHHPGMNHRVEVTEGVLAGECSAMLSDFF 149


>gi|168214007|ref|ZP_02639632.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens CPE str. F4969]
 gi|170714472|gb|EDT26654.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens CPE str. F4969]
          Length = 143

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 17/122 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
            +S AL  +            V  +IVK+G +I R      T      HAE+ A+ EA  
Sbjct: 1   MLSLALEEAEKAR--EKGEVPVGAVIVKNGEIIARAHNLKETLKDPTAHAEMLAIREACN 58

Query: 66  E-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           +       G   YVTLEPC      P CA  I++  + ++ +   D     +G  +  L 
Sbjct: 59  KLNNWRLHGCEMYVTLEPC------PMCAGAILQSRLSKIYIGTFDDTTGAAGSVVNILQ 112

Query: 121 QK 122
             
Sbjct: 113 NH 114


>gi|23493630|dbj|BAC18599.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 292

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 77/217 (35%), Gaps = 13/217 (5%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD---- 204
           +      +  +       AG  S  +        +  LRA SD +LVG  TV A+D    
Sbjct: 77  QPECRAVLVTTLAGSTS-AGGTSGHLGNDTDTALLLALRAWSDVVLVGASTVRAEDYGGV 135

Query: 205 ----PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
                    R    Q+  P   ++     L   S+    A  AP IIVT+N DP      
Sbjct: 136 VIGEAGREARRRRGQQPVPPIAVISSSLDLDPGSRFFTEAAAAP-IIVTDNTDPSRLAGL 194

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
           +     I+      +  ++  L   G   +  EGGA+V    I++ ++D         + 
Sbjct: 195 QAAGARILQVGTLGVGLVVDKLRQEGFARISCEGGASVYAQMIDAGVIDVWHHTIDPALS 254

Query: 321 GEGGIPSPLEEGYLEKNFMCVRRDYFGSD--VCLEYI 355
           G    P+ +  G  +   + +   +   D  + L Y 
Sbjct: 255 GTVEKPA-VRGGRNQPVALTLEHMHADPDSTLFLRYR 290


>gi|325288211|ref|YP_004264392.1| tRNA-adenosine deaminase [Syntrophobotulus glycolicus DSM 8271]
 gi|324963612|gb|ADY54391.1| tRNA-adenosine deaminase [Syntrophobotulus glycolicus DSM 8271]
          Length = 148

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 59/149 (39%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             +M  AL+ +     L      +  +IVK+G ++               HAE+ A++ A
Sbjct: 4   EDWMRLALKQAETA--LEKDEVPIGAVIVKNGEILALAHNEKETNQDPTAHAEMLAIKRA 61

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            ++       GAT YVTLEPC      P CA  II+  I  +V   DD      G  L  
Sbjct: 62  AQKLGAWRLSGATLYVTLEPC------PMCAGAIIQSRIETLVYGADDSKGGAVGSVLNV 115

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYL 142
           L       K  I+  ++E E    L  + 
Sbjct: 116 LQHQLWNHKVEIITGILEEESARLLKGFF 144


>gi|149278271|ref|ZP_01884409.1| putative cytosine/adenosine deaminase [Pedobacter sp. BAL39]
 gi|149231037|gb|EDM36418.1| putative cytosine/adenosine deaminase [Pedobacter sp. BAL39]
          Length = 157

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 17/148 (11%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
           ++ D  +M  AL  +       +    +  ++V  G ++GRG            HAE+QA
Sbjct: 13  AAEDEHYMRLALEEANKA--YVAEEVPIGAIVVCKGRIVGRGYNLTEQLNDVTAHAEMQA 70

Query: 60  LEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
              A     G+  +  T YVT+EPC     +    Q      + R+V    +P    + R
Sbjct: 71  FTAAAQTLGGKYLKDCTIYVTVEPCVMCAGASYWMQ------VGRLVYGATEPKRGFTSR 124

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYL 142
           G + L  K I+   ++  E    +  + 
Sbjct: 125 GAKLLHPKTILKAGVLAEECGALMTRFF 152


>gi|145295799|ref|YP_001138620.1| hypothetical protein cgR_1724 [Corynebacterium glutamicum R]
 gi|140845719|dbj|BAF54718.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 232

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 72/207 (34%), Gaps = 14/207 (6%)

Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD-------P--ELTC 209
           +  N        S  +        +  LR  SD +LVG  TV A++       P  +   
Sbjct: 25  TAINGSTTINGTSGQLGNSTDTELLLALRRWSDVVLVGSSTVKAENYGGVKVSPEIQKQR 84

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
           +  G +   P+  ++       +D++    A + P+II T+N D             +I 
Sbjct: 85  QELGQEAIPPIA-VMSGSLNFDVDTRFFLEAEVPPIII-TDNSDQTKQQRLVDAGAQVIE 142

Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
            +    +  +  L   G   +  EGGA +    + + LVD         + G    P+  
Sbjct: 143 VETLTAEVGVEKLRSLGYARIDCEGGATLYGQMLAADLVDVWHHTIDPTLSGSVERPTVK 202

Query: 330 EEGYLEKNFMCVRRDYFGSD--VCLEY 354
            +    + F  +   +   D  + L Y
Sbjct: 203 GDDDAPRRF-ALEHVFVDDDSTLFLRY 228


>gi|19553100|ref|NP_601102.1| hypothetical protein NCgl1821 [Corynebacterium glutamicum ATCC
           13032]
 gi|62390735|ref|YP_226137.1| hypothetical protein cg2076 [Corynebacterium glutamicum ATCC 13032]
 gi|21324665|dbj|BAB99289.1| Pyrimidine reductase, riboflavin biosynthesis [Corynebacterium
           glutamicum ATCC 13032]
 gi|41326073|emb|CAF20236.1| RIBOFLAVIN SPECIFIC DEAMINASE [Corynebacterium glutamicum ATCC
           13032]
          Length = 232

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 71/207 (34%), Gaps = 14/207 (6%)

Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD-------P--ELTC 209
           +  N        S  +        +  LR  SD +LVG  TV A++       P  +   
Sbjct: 25  TAINGSTTINGTSGQLGNSTDTELLLALRRWSDVVLVGSSTVKAENYGGVEVSPEIQKQR 84

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
           +  G +   P+  ++       +D++    A + P+II T+N D             +I 
Sbjct: 85  QELGQEAIPPIA-VMSGSLNFDVDTRFFLEAEVPPIII-TDNSDQAKQQRLVDAGAQVIE 142

Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
            +    +  +  L   G   +  EGGA +    + + LVD         + G    P+  
Sbjct: 143 VETLTAEVGVEKLRSLGYARIDCEGGATLYGQMLAADLVDVWHHTIDPTLSGSVERPTVK 202

Query: 330 EEGYLEKNFMCVRRDYFGSD--VCLEY 354
                 + F  +   +   D  + L Y
Sbjct: 203 GGDDAPRRF-ALEHVFVDDDSTLFLRY 228


>gi|270291666|ref|ZP_06197882.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           sp. M143]
 gi|270279751|gb|EFA25592.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           sp. M143]
          Length = 155

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 58/149 (38%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  ALR +   + L      + C+IVK+G +IGRG  A         HAE+ A+E A
Sbjct: 9   EAFMREALREAE--IALEHDEIPIGCVIVKNGEIIGRGHNAREELQRAVMHAEIMAIENA 66

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I  VV    +     +G     
Sbjct: 67  NASEESWRLLDCTLFVTIEPC------VMCSGAIGLARIPNVVYGAKNQKFGAAGSLYDI 120

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   ++ESE    +  + 
Sbjct: 121 LTDERLNHRVEVETGVLESECAAIMQDFF 149


>gi|16761480|ref|NP_457097.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16765888|ref|NP_461503.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29140823|ref|NP_804165.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62181133|ref|YP_217550.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224582890|ref|YP_002636688.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|25303877|pir||AF0827 conserved hypothetical protein STY2814 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|303325222|pdb|3OCQ|A Chain A, Crystal Structure Of Trna-Specific Adenosine Deaminase
           From Salmonella Enterica
 gi|16421115|gb|AAL21462.1| putative cytosine/adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16503780|emb|CAD02770.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136448|gb|AAO68014.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|62128766|gb|AAX66469.1| putative Cytosine/adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224467417|gb|ACN45247.1| hypothetical protein SPC_1081 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261247763|emb|CBG25591.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994694|gb|ACY89579.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159116|emb|CBW18630.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|322715623|gb|EFZ07194.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323130899|gb|ADX18329.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332989495|gb|AEF08478.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 183

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 59/155 (38%), Gaps = 22/155 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL + 
Sbjct: 20  EYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQG 77

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +       T YVTLEPC        CA  ++   I RVV    D     +G  +  
Sbjct: 78  GLVLQNYRLLDTTLYVTLEPC------VMCAGAMVHSRIGRVVFGARDAKTGAAGSLIDV 131

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYLTRQVEK 148
           L   G+     I++ ++  E    L  +   + ++
Sbjct: 132 LHHPGMNHRVEIIEGVLRDECATLLSDFFRMRRQE 166


>gi|205353664|ref|YP_002227465.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207857975|ref|YP_002244626.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|205273445|emb|CAR38422.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206709778|emb|CAR34130.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326628768|gb|EGE35111.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 183

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 59/155 (38%), Gaps = 22/155 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL + 
Sbjct: 20  EYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQG 77

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +       T YVTLEPC        CA  ++   I RVV    D     +G  +  
Sbjct: 78  GLVLQNYRLLDTTLYVTLEPC------VMCAGAMVHSRIGRVVFGARDAKTGAAGSLIDV 131

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYLTRQVEK 148
           L   G+     I++ ++  E    L  +   + ++
Sbjct: 132 LHHPGMNHRVDIIEGVLRDECATLLSDFFRMRRQE 166


>gi|283131371|dbj|BAI63375.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae
           subsp. equisimilis]
 gi|283131431|dbj|BAI63432.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae
           subsp. equisimilis]
          Length = 183

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 51/131 (38%), Gaps = 18/131 (13%)

Query: 1   MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
           MP S      FM  AL+ +   +        + C+IVKDG +IGRG  A         HA
Sbjct: 9   MPYSLEEQTYFMQEALKEAEKSLQKAE--IPIGCVIVKDGEIIGRGHNAREESNQAIMHA 66

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+ EA            T +VT+EPC        C+  I    I  V+    +    
Sbjct: 67  EMMAINEANAYEGNWRLLDTTMFVTIEPC------VMCSGAIGLARIPHVIYGASNQKFG 120

Query: 111 VSGRGLQWLSQ 121
            +    Q L+ 
Sbjct: 121 GTDSLYQILTD 131


>gi|284006748|emb|CBA72005.1| tRNA-specific adenosine deaminase [Arsenophonus nasoniae]
          Length = 164

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 22/156 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
           M  +  D  +M  A+  +            V  ++V +  +I  G       +  C HAE
Sbjct: 1   MEQAKKDVYWMRKAILLAEKAQ--AKGEIPVGAVLVHEDKLIAEGWNQPISDHDPCAHAE 58

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL   G+  +       T YVTLEPC        CA  +I   I R+V    D     
Sbjct: 59  IIALRAGGQYLQNYRLLNTTLYVTLEPCIM------CAGAMIHARISRLVYGACDQKTGA 112

Query: 112 SGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
           +G  +       ++ + +++  ++  E    L  + 
Sbjct: 113 AGSIIDVFNHPDMNHRILVLGGILSDECSAMLSRFF 148


>gi|71900513|ref|ZP_00682643.1| riboflavin-specific deaminase [Xylella fastidiosa Ann-1]
 gi|71729753|gb|EAO31854.1| riboflavin-specific deaminase [Xylella fastidiosa Ann-1]
          Length = 104

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 46/85 (54%), Gaps = 4/85 (4%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP--SPL 329
             DL  +L +L  RG+  + VE GA +  + +++ LVD +++Y + +++G+   P  + L
Sbjct: 14  GLDLGAVLRLLGERGINEVQVEAGATLCGALLHAGLVDELLIYIAPLLLGDTARPLLAGL 73

Query: 330 EEGYLEK--NFMCVRRDYFGSDVCL 352
           + G +++      +     G+D+ L
Sbjct: 74  DIGRMDQCIGLKVLEVAQVGNDLRL 98


>gi|71907824|ref|YP_285411.1| tRNA-adenosine deaminase [Dechloromonas aromatica RCB]
 gi|71847445|gb|AAZ46941.1| tRNA-adenosine deaminase [Dechloromonas aromatica RCB]
          Length = 146

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 57/146 (39%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA--- 63
           M  A+  +R           V  ++V +G ++GRG  +  G      HAE+ AL +A   
Sbjct: 1   MREAISLARAAE--CLGEVPVGAVVVLNGEIVGRGFNSPIGESDPTAHAEIAALRDAARV 58

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG-----L 116
                  G   +VTLEPC+       CA  I+   I RV+    DP   V G       +
Sbjct: 59  LGNYRLPGCELFVTLEPCAM------CAGAIMHSRISRVIYGARDPKTGVHGSVVDLFGV 112

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYL 142
           + L+    +   ++  E    L  + 
Sbjct: 113 ERLNHHATVEGGVLAEECSTLLSGFF 138


>gi|164686927|ref|ZP_02210955.1| hypothetical protein CLOBAR_00529 [Clostridium bartlettii DSM
           16795]
 gi|164604030|gb|EDQ97495.1| hypothetical protein CLOBAR_00529 [Clostridium bartlettii DSM
           16795]
          Length = 150

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 26/150 (17%)

Query: 9   RFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
            FM+ A+  ++     G T     +  +IVKD  +IGRG     T      HAE+ A+++
Sbjct: 5   FFMNEAINEAKKAYDKGET----PIGAVIVKDSEIIGRGHNLTETLRDSTAHAEMLAIKD 60

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG-- 115
           A     G        YVT+EPC        C+  I+   I+ +++           +   
Sbjct: 61  ASETLGGWRLTDCDLYVTMEPCIM------CSGAIVNSRIKNIIIGTKHIKNANIEKQHT 114

Query: 116 --LQWLSQKGI-IVDRMMESEGKIFLHAYL 142
             +++     + +   +ME E  I L  + 
Sbjct: 115 FKMEYFKDSRVNVEFGIMEDECSIILQRFF 144


>gi|42518517|ref|NP_964447.1| hypothetical protein LJ0422 [Lactobacillus johnsonii NCC 533]
 gi|41582802|gb|AAS08413.1| hypothetical protein LJ_0422 [Lactobacillus johnsonii NCC 533]
          Length = 160

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 45/123 (36%), Gaps = 18/123 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEE 62
            ++M  A   ++           +  ++V KDG VIG G            HAE+ A+ +
Sbjct: 8   EKYMHLAFEQAKKAE--EQGEVPIGAVVVDKDGNVIGEGYNRRELDEDATQHAEMIAIRQ 65

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +          + ++TLEPC      P C+  II   +  V     DP    +   + 
Sbjct: 66  ACKNLNSWRLVDCSLFITLEPC------PMCSGAIINSRLAEVYYGAFDPKAGAASSVID 119

Query: 118 WLS 120
              
Sbjct: 120 LFK 122


>gi|300813981|ref|ZP_07094274.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511875|gb|EFK39082.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 157

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 47/127 (37%), Gaps = 21/127 (16%)

Query: 9   RFMSAALRFSRWHVGLTSTN--PSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
            FM  AL  ++    ++  N    V C+IVKD  +IG+G            HAE+ A+  
Sbjct: 10  YFMKKALELAK----ISYKNFDVPVGCVIVKDKKIIGQGYNQKEKKKNPLCHAEINAINS 65

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +            YVTLEPC        C   II   I+ +     +         ++
Sbjct: 66  ACKNLNSYHLEDCDMYVTLEPCLM------CVGAIINARIKNLYFGAYNYRFGAVLSHVE 119

Query: 118 WLSQKGI 124
            L   G 
Sbjct: 120 LLKDGGF 126


>gi|291521262|emb|CBK79555.1| Cytosine/adenosine deaminases [Coprococcus catus GD/7]
          Length = 160

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 15/102 (14%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEAGE-----EARGATAYVTLEPCS 80
            + C+IV +G +I RG            HAE+ A+ +A +        G T Y+TLEPC 
Sbjct: 25  PIGCVIVYEGKIIARGYNKRNKEKNTLSHAEMNAIRKASKYLGDWRLEGCTMYITLEPC- 83

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                P CA  I++  + RVV+   +     +G  L  L ++
Sbjct: 84  -----PMCAGAIVQARVDRVVIGSMNAKAGCAGSVLNVLQER 120


>gi|283131386|dbj|BAI63389.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae
           subsp. equisimilis]
          Length = 183

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 19/128 (14%)

Query: 5   SFDAR--FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           S D +  FM  AL+ +   +        + C+IVKDG +IGRG  A         HAE+ 
Sbjct: 12  SLDEQTYFMQEALKEAEKSLQKAE--IPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMM 69

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+ EA            T +VT+EPC        C+  I    I  V+    +     + 
Sbjct: 70  AINEANAHEGNWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVIYGASNQKFGGTD 123

Query: 114 RGLQWLSQ 121
              Q L+ 
Sbjct: 124 SLYQILTD 131


>gi|299542082|ref|ZP_07052398.1| hypothetical protein BFZC1_24048 [Lysinibacillus fusiformis ZC1]
 gi|298725397|gb|EFI66045.1| hypothetical protein BFZC1_24048 [Lysinibacillus fusiformis ZC1]
          Length = 171

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 63/175 (36%), Gaps = 22/175 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M +   D  FM  AL  ++    L      +  ++V +G +I R      T      HAE
Sbjct: 1   MDIFDADRLFMKQALEEAQQAALL--GEVPIGAVLVYEGKIIARAHNLRETTQNATTHAE 58

Query: 57  VQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +  ++EA ++         T YVTLEPC      P CA  I++  + RVV    D     
Sbjct: 59  LLVIQEACKKIGSWRLEDTTLYVTLEPC------PMCAGAILQSRVPRVVYGARDQKAGC 112

Query: 112 SGRGLQWL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
                  L     +    + + ++  E    L  +     +++         S D
Sbjct: 113 VDSLYHLLNDERFNHDCDVTEGILAEECGQILTDFFKALRDRKKAEKKARLASND 167


>gi|319940016|ref|ZP_08014370.1| tRNA-specific adenosine deaminase [Streptococcus anginosus
           1_2_62CV]
 gi|319810730|gb|EFW07057.1| tRNA-specific adenosine deaminase [Streptococcus anginosus
           1_2_62CV]
          Length = 155

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 66/155 (42%), Gaps = 22/155 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ +   + L +    + C+IVK+G +IGRG  A         HAEV A+E+A
Sbjct: 9   EFFMREALKEAE--IALVNDEIPIGCVIVKNGEIIGRGHNAREELQRAVMHAEVMAIEKA 66

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            +          T +VT+EPC        C+  I    I +V+    +P    +G     
Sbjct: 67  NQHEHSWRLLDTTLFVTIEPC------VMCSGAIGLARIPQVIYGAKNPKFGAAGSLYDI 120

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
                L+ +  +   ++E E    +  +  ++ ++
Sbjct: 121 LTDERLNHRVELETGILEVECAQMMQDFFRKRRQR 155


>gi|241955527|ref|XP_002420484.1| DRAP deaminase, putative; pseudouridine synthase, putative [Candida
           dubliniensis CD36]
 gi|223643826|emb|CAX41563.1| DRAP deaminase, putative [Candida dubliniensis CD36]
          Length = 589

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 12/137 (8%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQAL-----E 61
            +FM  A++ +    G T T  +V C++V +G VI  G +    G  HAE  AL     +
Sbjct: 438 RKFMEMAIKEAEK-CGKTQTQFNVGCVLVHNGQVISTGHSRELPGNTHAEQCALEKYFSK 496

Query: 62  EAGEE--ARGATAYVTLEPCS-HYGRSPPCAQFIIECG-IRRVVVCVDDPDVR-VSGRGL 116
             GE     G   + ++EPCS     + PC   I++   I+   V V +PD+   +    
Sbjct: 497 NGGEREVPSGTEIFTSMEPCSLRLSGNLPCVDRILQTKSIKTCFVGVLEPDIFVKNNSSY 556

Query: 117 QWLSQKGIIVDRMMESE 133
           + L   G+    +   E
Sbjct: 557 KKLLDHGVEYIHIPGYE 573


>gi|322412766|gb|EFY03674.1| putative cytidine/deoxycytidylate deaminase family protein
           [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
           27957]
          Length = 175

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 19/128 (14%)

Query: 5   SFDAR--FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           S D +  FM  AL+ +   +        + C+IVKDG +IGRG  A         HAE+ 
Sbjct: 4   SLDEQTYFMQEALKEAEKSLQKAE--IPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMM 61

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+ EA            T +VT+EPC        C+  I    I  V+   ++     + 
Sbjct: 62  AINEANAHEGNWRLLDTTMFVTIEPC------VMCSGAIGLARIPHVIYGANNQKFGGTD 115

Query: 114 RGLQWLSQ 121
              Q L+ 
Sbjct: 116 SLYQILTD 123


>gi|54025280|ref|YP_119522.1| putative pyrimidine deaminase [Nocardia farcinica IFM 10152]
 gi|54016788|dbj|BAD58158.1| putative pyrimidine deaminase [Nocardia farcinica IFM 10152]
          Length = 149

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 62/137 (45%), Gaps = 14/137 (10%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNP---SVACLIVKDGIVIGRGVTAYGG-CPHAEVQAL 60
           + D  +M+ A+  +R         P   SV  +IV DGI I  G +       HAE  AL
Sbjct: 2   TTDHHWMNRAIELARR----CPPAPGAFSVGAVIVADGIEIASGYSRETDLKVHAEEAAL 57

Query: 61  EE---AGEEARGATAYVTLEPCSHYGRSP--PCAQFIIECGIRRVVVCVDDPDVRVS-GR 114
           ++          AT Y TLEPCS    +   PC   ++  GI RVV+   +P   V+   
Sbjct: 58  DKLDPHDPRLSRATIYSTLEPCSERATTTRLPCTDRVLAVGIPRVVIAWREPATFVADCV 117

Query: 115 GLQWLSQKGIIVDRMME 131
           G++ L Q G+ V  + E
Sbjct: 118 GVEKLEQSGVEVVELRE 134


>gi|118618636|ref|YP_906968.1| hypothetical protein MUL_3305 [Mycobacterium ulcerans Agy99]
 gi|118570746|gb|ABL05497.1| bifunctional enzyme riboflavin biosynthesis protein RibD
           [Mycobacterium ulcerans Agy99]
          Length = 260

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 75/229 (32%), Gaps = 19/229 (8%)

Query: 107 PDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM 166
           PD          L+  G       E         Y        + +      S D     
Sbjct: 2   PDPTSGRSADAQLTLLGTDRQLTDED----LPEFYGYPAKLSSTWLRANFITSLDGG-AT 56

Query: 167 AGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHS------- 218
            G  S  + G   +    LLR  +D ILVG GTV  +      R +   Q+         
Sbjct: 57  VGGTSGGLAGPGDRAVFVLLRELADVILVGAGTVRIEGYSGAQRGVAERQQRQARGQSEV 116

Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK- 277
           P   I     +L  D  +     + P+++                   ++ C  +D  + 
Sbjct: 117 PQLAIATNSGQLDRDLPVFTRTEVPPLVLTAAAAVYDTRRRLTGL-AEVVGCSGKDPHRV 175

Query: 278 ----LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
               LL  L GRG+  +L EGG  +  S I   L+D + L  + +V+G 
Sbjct: 176 DEGLLLARLAGRGMRCILTEGGPTLFGSLIEQDLLDELCLTIAPVVVGG 224


>gi|284037689|ref|YP_003387619.1| CMP/dCMP deaminase zinc-binding protein [Spirosoma linguale DSM 74]
 gi|283816982|gb|ADB38820.1| CMP/dCMP deaminase zinc-binding protein [Spirosoma linguale DSM 74]
          Length = 158

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 16/116 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           +++ D  F+  A++ +R  +      P    +IV+DG ++G+G            HAEV 
Sbjct: 1   MTNQDEVFLREAIQLAREGMTTDQGGP-FGSVIVRDGQIVGKGFNMVTSTNDPTAHAEVV 59

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           A+ +A       +  G T Y + EPC      P C   I      RVV      D 
Sbjct: 60  AIRDACRNLGTFQLDGCTLYASCEPC------PMCLGAIYWARPSRVVYAAQHADA 109


>gi|322515941|ref|ZP_08068882.1| tRNA-specific adenosine deaminase [Streptococcus vestibularis ATCC
           49124]
 gi|322125615|gb|EFX96945.1| tRNA-specific adenosine deaminase [Streptococcus vestibularis ATCC
           49124]
          Length = 172

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FMS AL+ ++  +        + C+IVKD  ++GRG  A         HAEV A++EA
Sbjct: 10  EFFMSEALKEAQKSLDKAE--IPIGCVIVKDREIVGRGHNAREELNQAIMHAEVMAIQEA 67

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I +V+    +     +G     
Sbjct: 68  NRTVGNWRLLDCTLFVTIEPC------VMCSGAIGLARIPKVIYGACNQKFGGAGSLYDI 121

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYL 142
           L       +  +   +ME++    +  + 
Sbjct: 122 LRDERLNHRVEVETSVMEADCAKIMQDFF 150


>gi|261855229|ref|YP_003262512.1| CMP/dCMP deaminase zinc-binding protein [Halothiobacillus
           neapolitanus c2]
 gi|261835698|gb|ACX95465.1| CMP/dCMP deaminase zinc-binding protein [Halothiobacillus
           neapolitanus c2]
          Length = 153

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 53/154 (34%), Gaps = 22/154 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
           SS D +F+  AL  +            V  ++V+ G VI  G  A         HAE+ A
Sbjct: 5   SSVDRQFIQQALDEANLAA--ADGEVPVGAVVVRQGKVIATGRNAPIRLNDPSAHAEILA 62

Query: 60  LEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           L  AG           T YVTLEPC      P C   I    I RVV    DP     G 
Sbjct: 63  LRAAGMALANYRLDDCTLYVTLEPC------PMCMAAISHARIARVVFAAPDPRAGACGG 116

Query: 115 GLQ-----WLSQKGIIVDRMMESEGKIFLHAYLT 143
            +      W     ++     E E    L  +  
Sbjct: 117 AIDLNRAPWHHHSVVVDTGPCEQEAAELLRHFFQ 150


>gi|261377687|ref|ZP_05982260.1| tRNA-specific adenosine deaminase [Neisseria cinerea ATCC 14685]
 gi|269145955|gb|EEZ72373.1| tRNA-specific adenosine deaminase [Neisseria cinerea ATCC 14685]
          Length = 239

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 61/156 (39%), Gaps = 22/156 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P  S    FM  AL  +     L    P V  +IV DG +I               HAE+
Sbjct: 87  PPQSEMEYFMRQALVQAEMSA-LMGEIP-VGAVIVSDGKIIASAHNTCIADCNVSRHAEI 144

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL +A  E +     G   Y+TLEPC+       CA  +I+  I+RV+    +P    +
Sbjct: 145 NALAQASSEMQNYRLDGCDIYITLEPCAM------CASALIQARIKRVIYGAVEPKTGAA 198

Query: 113 GRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLT 143
           G  +       L+    I   +++ E +  L  +  
Sbjct: 199 GSIVNLFADKRLNTHTAIRGGILQEECRSVLSCFFQ 234


>gi|306834459|ref|ZP_07467572.1| tRNA-specific adenosine deaminase [Streptococcus bovis ATCC 700338]
 gi|304423261|gb|EFM26414.1| tRNA-specific adenosine deaminase [Streptococcus bovis ATCC 700338]
          Length = 168

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ ++    L      + C+IVK+G +IGRG  A         HAE+ A+++A
Sbjct: 10  EYFMREALKEAQKS--LAKEEIPIGCVIVKNGDIIGRGHNAREERQKAILHAEIMAIDDA 67

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            E         +T +VT+EPC        C+  I    I +V+    +     +G     
Sbjct: 68  NENEGNWRLLDSTLFVTIEPC------VMCSGAIGLARIPQVIYGAANQKFGGAGSLYDI 121

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYLTRQ 145
                L+ +  +   ++E+E    +  +  + 
Sbjct: 122 LTDVRLNHRVEVETGILETECAAIMQDFFRKN 153


>gi|257871097|ref|ZP_05650750.1| cytidine/deoxycytidylate deaminase [Enterococcus gallinarum EG2]
 gi|257805261|gb|EEV34083.1| cytidine/deoxycytidylate deaminase [Enterococcus gallinarum EG2]
          Length = 173

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 17/123 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
             FM  AL+ ++    +      +  ++V +G +IGRG            HAE+ A+++A
Sbjct: 18  EYFMREALKEAQKAEAIAEV--PIGAVVVLEGQIIGRGHNLREKQQEATAHAEMFAIQQA 75

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            +         A  +VTLEPC      P C+  ++   +  V     DP    +G  L  
Sbjct: 76  CQAIESWRLEQAQLFVTLEPC------PMCSGAMMLARVEEVYFGAYDPKGGAAGSLLNL 129

Query: 119 LSQ 121
           L  
Sbjct: 130 LED 132


>gi|196228535|ref|ZP_03127402.1| CMP/dCMP deaminase zinc-binding [Chthoniobacter flavus Ellin428]
 gi|196227938|gb|EDY22441.1| CMP/dCMP deaminase zinc-binding [Chthoniobacter flavus Ellin428]
          Length = 156

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 52/150 (34%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
           D  FM  ALR +R           +  +IV  G +I R             HAE+ A+ +
Sbjct: 10  DTYFMGEALRQARRAW--EQEEVPIGAVIVHQGRIIARACNQVEVLKDATAHAEMLAITQ 67

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A              YVT EPC      P CA  ++   ++RVV     P     G  LQ
Sbjct: 68  AESVLGDWRLNECDLYVTKEPC------PMCAGALVHVRMKRVVFGCPSPKDGAGGSLLQ 121

Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYL 142
            L          I   + + E    L A+ 
Sbjct: 122 ILQHPKLNHSCEITTGVRQDECAAMLQAFF 151


>gi|323128130|gb|ADX25427.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 175

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 51/131 (38%), Gaps = 18/131 (13%)

Query: 1   MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
           MP S      FM  AL+ +   +        + C+IVKDG +IGRG  A         HA
Sbjct: 1   MPYSLEEQTYFMQEALKEAEKSLQKAE--IPIGCVIVKDGEIIGRGHNAREESNQAIMHA 58

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+ EA            T +VT+EPC        C+  I    I  V+    +    
Sbjct: 59  EMMAINEANAYEGNWRLLDTTMFVTIEPC------VMCSGAIGLARIPHVIYGASNQKFG 112

Query: 111 VSGRGLQWLSQ 121
            +    Q L+ 
Sbjct: 113 GTDSLYQILTD 123


>gi|300789456|ref|YP_003769747.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Amycolatopsis
           mediterranei U32]
 gi|299798970|gb|ADJ49345.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Amycolatopsis
           mediterranei U32]
          Length = 245

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 69/179 (38%), Gaps = 14/179 (7%)

Query: 191 DAILVGIGTVLAD-----DPELTC----RLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
           D +LVG GT +A+      P+       R  GL   +P+ ++      L  D+ +I T  
Sbjct: 68  DVVLVGAGTAVAEGFEGMRPDAATAERRRRFGLAPIAPVAVVTTGR-SLPPDAPVI-TKA 125

Query: 242 LAPVIIVTENDDP---VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
             P ++ T    P     A A     + ++       +++++ LV  G+  +  EGG  +
Sbjct: 126 AVPTLVFTSAAAPSALREAWAAHGARVFVVGESAVSAERVVSTLVAEGLGRIDCEGGPRL 185

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
             S I + LVD   L  +  ++      + L                 G+ V L Y+ +
Sbjct: 186 FGSLIEAGLVDEFRLTVAPFLVAGTSSRASLGAAVDPAELELASVLTDGASVLLRYLAR 244


>gi|238897621|ref|YP_002923300.1| CMP/dCMP deaminase; zinc-binding [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229465378|gb|ACQ67152.1| CMP/dCMP deaminase; zinc-binding [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 168

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 46/117 (39%), Gaps = 18/117 (15%)

Query: 2   PVSSFDARF-MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
           P S  D  + M  AL  +       S    +  ++V +   IG G       +    HAE
Sbjct: 9   PDSELDHHYWMRHALSLAEQAQ--ASGEVPIGAVVVVNNQSIGEGWNQSVMCHDPTAHAE 66

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           + AL +AG   +      AT YVTLEPC        C   I+   IR +V    DP 
Sbjct: 67  IIALRQAGRHQKNYRLVNATLYVTLEPCMM------CVGAIMHSRIRGLVYGAPDPK 117


>gi|159037136|ref|YP_001536389.1| hypothetical protein Sare_1500 [Salinispora arenicola CNS-205]
 gi|157915971|gb|ABV97398.1| bifunctional deaminase-reductase domain protein [Salinispora
           arenicola CNS-205]
          Length = 248

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/200 (23%), Positives = 73/200 (36%), Gaps = 16/200 (8%)

Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203
                R H+ +    S D  +      S  ++G   K    LLR   D ++V  GT+  +
Sbjct: 28  YGRTDRPHLRVNFVTSVDGAV-TVDGYSAGLSGEPDKRVFGLLRMLCDGLVVAGGTMRHE 86

Query: 204 D--P-ELTCRLNGLQEHS-----PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
              P  L  R    +        P  +++     L         A + PV++        
Sbjct: 87  RYRPIRLDERRRAWRREHGLPQYPTLVVVSGSLNLDPAQAAFVDAPVRPVVLTHAAATAP 146

Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
             LA    ++     D  DL   L  L  RG+  LL EGG  +  +   + LVD + L  
Sbjct: 147 PGLA-EVADVVECGDDRVDLTAGLAELRRRGLGQLLCEGGPHLFGALTAADLVDEVCLTL 205

Query: 316 SQIVIGEG------GIPSPL 329
           + ++ G G      G PSP+
Sbjct: 206 APLLAGPGPGRITAGGPSPV 225


>gi|238918820|ref|YP_002932334.1| cytidine and deoxycytidylate deaminase family protein [Edwardsiella
           ictaluri 93-146]
 gi|238868388|gb|ACR68099.1| cytidine and deoxycytidylate deaminase family protein [Edwardsiella
           ictaluri 93-146]
          Length = 170

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 63/163 (38%), Gaps = 22/163 (13%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
            D+ +M  AL+ +            V  ++V +  VIG G     T +    HAE+ AL+
Sbjct: 5   DDSDWMRHALQLAEKARAQ--GEVPVGAVLVLNDRVIGEGWNRPITRHDPTAHAEIMALQ 62

Query: 62  EAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           + G   +      AT YVTLEPC        CA  ++   IRR+V    D     +G  L
Sbjct: 63  QGGAVMQNYRLLEATLYVTLEPC------VMCAGAMVHSRIRRLVYGAPDLKTGAAGSLL 116

Query: 117 QWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITL 154
             L   G+     +   ++       L  +  ++  ++     
Sbjct: 117 DVLGHPGMNHRIEVCGGVLADACAAQLSDFFRQRRAQKRAERD 159


>gi|194289718|ref|YP_002005625.1| tRNA-specific adenosine deaminase [Cupriavidus taiwanensis LMG
           19424]
 gi|193223553|emb|CAQ69558.1| tRNA-specific adenosine deaminase [Cupriavidus taiwanensis LMG
           19424]
          Length = 194

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 17/128 (13%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
           +  DAR+M AAL  +R      +    V  ++V +  +I RG            HAE+QA
Sbjct: 23  AERDARYMRAALEEARLAE--AAGEVPVGAVVVWNDTIIARGHNLPIRSVDPSAHAEMQA 80

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           L  A +            YVTLEPC+       C+  I+   +R VV    DP    +G 
Sbjct: 81  LRAAAQVIGNYRMPECELYVTLEPCAM------CSGAILHARLRHVVFGASDPKTGAAGS 134

Query: 115 GLQWLSQK 122
            +    Q 
Sbjct: 135 VVNLFEQA 142


>gi|321313686|ref|YP_004205973.1| tRNA specific adenosine deaminase [Bacillus subtilis BSn5]
 gi|320019960|gb|ADV94946.1| tRNA specific adenosine deaminase [Bacillus subtilis BSn5]
          Length = 161

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
           + D  +M  A++ ++           +  ++V +  +I R      T      HAE+  +
Sbjct: 2   TQDELYMKEAIKEAKKAE--EKGEVPIGAVLVVNDEIIARAHNLRETEQRSIAHAEMLVM 59

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA +        GAT YVTLEPC      P CA  ++   + +VV    DP    SG  
Sbjct: 60  DEACKALGTWRLEGATLYVTLEPC------PMCAGAVVLSRVEKVVFGAFDPKGGCSGTL 113

Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
           +  L       +  +V  ++E E    L A+ 
Sbjct: 114 MNLLQEERFNHQAEVVSGVLEEECGGMLSAFF 145


>gi|299067502|emb|CBJ38701.1| tRNA-specific adenosine deaminase [Ralstonia solanacearum CMR15]
          Length = 183

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 17/130 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56
           M V   D  +M  AL  +R   G       V  ++V+   ++G G  A  G      HAE
Sbjct: 13  MSVHERDGYWMQQALVQARLAWG--EGEVPVGAVVVRGNEIVGVGYNAPIGTHDPSAHAE 70

Query: 57  VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           ++AL +A              +VTLEPC        CA  ++   + RVV    DP    
Sbjct: 71  MRALRQAAVRLGNYRLPECEVFVTLEPC------VMCAGAMLHARVARVVYGAPDPKTGA 124

Query: 112 SGRGLQWLSQ 121
           +G  L   ++
Sbjct: 125 AGSVLDLFAE 134


>gi|171777570|ref|ZP_02919258.1| hypothetical protein STRINF_00093 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283179|gb|EDT48603.1| hypothetical protein STRINF_00093 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 168

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ ++    L      + C+IVK+G +IGRG  A         HAE+ A+++A
Sbjct: 10  EYFMREALKEAQKS--LAKEEIPIGCVIVKNGDIIGRGHNAREERQKAILHAEIMAIDDA 67

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            E         +T +VT+EPC        C+  I    + +V+    +     +G     
Sbjct: 68  NENEGSWRLLDSTLFVTIEPC------VMCSGAIGLARVPQVIYGAANQKFGGAGSLYDI 121

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYLTRQ 145
                L+ +  +   ++E+E    +  +  + 
Sbjct: 122 LTDVRLNHRVEVETGILETECAAIMQDFFRKN 153


>gi|320547592|ref|ZP_08041877.1| tRNA-specific adenosine deaminase [Streptococcus equinus ATCC 9812]
 gi|320447667|gb|EFW88425.1| tRNA-specific adenosine deaminase [Streptococcus equinus ATCC 9812]
          Length = 168

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 60/152 (39%), Gaps = 22/152 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
             FM  AL+ ++    L      + C+IVKDG +IGRG            HAE+ A+ EA
Sbjct: 10  EFFMREALKEAQKS--LEKEEIPIGCVIVKDGEIIGRGHNAREEQQKAILHAEIMAINEA 67

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            E         +  +VT+EPC        C+  I    I +V+    +     +G     
Sbjct: 68  NENEGNWRLLDSMLFVTIEPC------VMCSGAIGLARIPQVIYGAANQKFGGAGSLYDI 121

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYLTRQ 145
                L+ +  +   ++E+E    +  +  + 
Sbjct: 122 LTDIRLNHRVEVETGILEAECAGIMQDFFRKN 153


>gi|300774752|ref|ZP_07084615.1| cytosine deaminase [Chryseobacterium gleum ATCC 35910]
 gi|300506567|gb|EFK37702.1| cytosine deaminase [Chryseobacterium gleum ATCC 35910]
          Length = 143

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 18/145 (12%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  +M  AL+ +     L      + C++V +  +I R      T      HAE+QA+  
Sbjct: 4   DEYYMKMALQEAEAA--LEKDEVPIGCVVVSNNRIIARAHNLTETLNDVTAHAEMQAITS 61

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G+  +  T YVT+EPC        C+  +    I +VV+   D       + L 
Sbjct: 62  AANFLGGKYLKDCTLYVTMEPC------VMCSGALSWSQISKVVIGARDEQRGFINKHL- 114

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYL 142
            L  K  ++  +ME+E    +  + 
Sbjct: 115 SLHPKTEVITGIMEAECSSIVKQFF 139


>gi|331270688|ref|YP_004397180.1| CMP/dCMP deaminase, zinc-binding protein [Clostridium botulinum
           BKT015925]
 gi|329127238|gb|AEB77183.1| CMP/dCMP deaminase, zinc-binding protein [Clostridium botulinum
           BKT015925]
          Length = 147

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 55/150 (36%), Gaps = 21/150 (14%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
            +  FM  AL+ +            V  +IVK+G VI        T      HAE+ A++
Sbjct: 1   MEEEFMKLALKEAEIAKN--KEEVPVGAVIVKNGKVIASAHNLRETLKDPTAHAEILAIK 58

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           +A              YVTLEPC      P C   II+  I+++ +   DP     G  +
Sbjct: 59  KACGILGNWRLSECEMYVTLEPC------PMCTGAIIQSRIKKIYIGTFDPVAGCCGSVV 112

Query: 117 QWLSQK----GIIVDRMMESEGKIFLHAYL 142
                +     + V  + + E    L  + 
Sbjct: 113 DLAQNRYLNTMVDVTWIYDKECSEILTNFF 142


>gi|283131444|dbj|BAI63444.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae
           subsp. equisimilis]
          Length = 183

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 51/131 (38%), Gaps = 18/131 (13%)

Query: 1   MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
           MP S      FM  AL+ +   +        + C+IVKDG +IGRG  A         HA
Sbjct: 9   MPYSLEEQTYFMQEALKEAEKSLQKAE--IPIGCVIVKDGEIIGRGHNAREESNQAIMHA 66

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+ EA            T +VT+EPC        C+  I    I  V+    +    
Sbjct: 67  EMMAINEANAHEGNWRLLDTTMFVTIEPC------VMCSGAIGLARIPHVIYGASNQKFG 120

Query: 111 VSGRGLQWLSQ 121
            +    Q L+ 
Sbjct: 121 GTDSLYQILTD 131


>gi|77166061|ref|YP_344586.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Nitrosococcus oceani ATCC 19707]
 gi|254436457|ref|ZP_05049961.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Nitrosococcus oceani AFC27]
 gi|76884375|gb|ABA59056.1| tRNA-adenosine deaminase [Nitrosococcus oceani ATCC 19707]
 gi|207087927|gb|EDZ65202.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Nitrosococcus oceani AFC27]
          Length = 155

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 17/127 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEV 57
           P    D  +M  AL  +R+     +    V  ++V++G ++G+G      ++    HAE+
Sbjct: 5   PPGEKDIPWMHHALALARYAE--EAGEVPVGAVVVQEGEMVGKGWNCPINSHDPTAHAEI 62

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           QA+  A ++       G T YVTLEPC+       CA  II+  I+RVV    DP    +
Sbjct: 63  QAIRAASQKLGNYRLVGTTLYVTLEPCAM------CAGAIIQARIQRVVFGAFDPKGGAA 116

Query: 113 GRGLQWL 119
           G  L  L
Sbjct: 117 GSALNIL 123


>gi|148826450|ref|YP_001291203.1| preprotein translocase subunit SecA [Haemophilus influenzae PittEE]
 gi|148716610|gb|ABQ98820.1| preprotein translocase subunit SecA [Haemophilus influenzae PittEE]
          Length = 161

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 55/156 (35%), Gaps = 23/156 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVT----AYGGCPHAEVQ 58
           S FD + M  AL  +     L      V  ++V D   +IG G            HAE+ 
Sbjct: 8   SEFDEKMMRYALELADKAEAL--GEIPVGAVLVDDARNIIGEGWNLSIVQSDPTAHAEII 65

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL    +  +      +T YVTLEPC        CA  I+   I+R+V    D      G
Sbjct: 66  ALRNGAKNIQNYRLLNSTLYVTLEPC------TMCAGAILHSRIKRLVFGASDYKTGAIG 119

Query: 114 RGLQ-----WLSQKGIIVDRMMESEGKIFLHAYLTR 144
                     ++    I   ++  E    L  +  +
Sbjct: 120 SRFHFFDDYKMNHTLEITSGVLAEECSQKLSTFFQK 155


>gi|113867903|ref|YP_726392.1| cytosine deaminase [Ralstonia eutropha H16]
 gi|113526679|emb|CAJ93024.1| cytosine deaminase [Ralstonia eutropha H16]
          Length = 200

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 51/128 (39%), Gaps = 17/128 (13%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
           +  DAR+M AAL  +R      +    V  ++V +  +I RG            HAE+QA
Sbjct: 23  AERDARYMRAALEEARLAE--AAGEVPVGAVVVWNDTIIARGHNLPIRSVDPSAHAEMQA 80

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           L  A +            YVTLEPC        C+  I+   +R VV    DP    +G 
Sbjct: 81  LRAAAQVIGNYRMPECELYVTLEPC------VMCSGAILHARLRHVVFGAADPKTGAAGS 134

Query: 115 GLQWLSQK 122
            L    Q 
Sbjct: 135 VLNLFEQA 142


>gi|330957624|gb|EGH57884.1| cytosine deaminase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 145

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 20/148 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQALEEAGE 65
           FM AA+  +R  +GL      +  +IV DG +IGRG       G P  H E+ ALE AG 
Sbjct: 4   FMQAAIDEAR--LGLDEGGIPIGSVIVHDGKIIGRGHNRRVQEGSPTRHGEMDALENAGR 61

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +     R A  Y TL PC+       C+  I+  GIR V+V  +   +       + L  
Sbjct: 62  QPASVYRDAVLYTTLSPCAM------CSGAILLYGIRTVIVGENQSFMGEE----ELLRS 111

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           +G+ ++ +  +E K  +  ++  + E  
Sbjct: 112 RGVSIEVLDNAECKDMMQGFIKSKPELW 139


>gi|322391142|ref|ZP_08064614.1| tRNA-specific adenosine deaminase [Streptococcus peroris ATCC
           700780]
 gi|321145895|gb|EFX41284.1| tRNA-specific adenosine deaminase [Streptococcus peroris ATCC
           700780]
          Length = 166

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ +   + L      + C+IVKDG +IGRG  A         HAE+ A+E+A
Sbjct: 20  EAFMREALKEAE--IALEHDEIPIGCVIVKDGKIIGRGHNAREELQRAVMHAEIMAIEDA 77

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I  VV    +     +G     
Sbjct: 78  NLSEESWRLLDCTLFVTIEPC------VMCSGAIGLARIPNVVYGAKNQKFGAAGSLYDI 131

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   ++ESE    +  + 
Sbjct: 132 LTDERLNHRVDVETGVLESECAAIMQDFF 160


>gi|161612662|ref|YP_001586627.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161362026|gb|ABX65794.1| hypothetical protein SPAB_00358 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 172

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 61/163 (37%), Gaps = 23/163 (14%)

Query: 1   MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
           M     D   +M  AL  ++           V  ++V +  VIG G     G      HA
Sbjct: 1   MFDVELDHEYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHA 58

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ AL + G   +       T YVTLEPC        CA  ++   I RVV    D    
Sbjct: 59  EIMALRQGGLVLQNYRLLDTTLYVTLEPC------VMCAGAMVHSRIGRVVFGARDAKTG 112

Query: 111 VSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEK 148
            +G  +  L   G+     I++ ++  E    L  +   + ++
Sbjct: 113 AAGSLIDVLHHPGMNHRVEIIEGVLRDECATLLSDFFRMRRQE 155


>gi|90416322|ref|ZP_01224254.1| cytidine/deoxycytidylate deaminase family protein [marine gamma
           proteobacterium HTCC2207]
 gi|90332047|gb|EAS47261.1| cytidine/deoxycytidylate deaminase family protein [marine gamma
           proteobacterium HTCC2207]
          Length = 160

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 48/126 (38%), Gaps = 17/126 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
           S D  FM  A+  +     +      V  L+VK+G VIG G            HAE+ A+
Sbjct: 2   SLDEEFMGRAMELAHQAAAV--GEVPVGALVVKEGRVIGEGYNQPITSCDPTGHAEIIAM 59

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A +        G   YVT+EPC        C   ++   I ++V    +P        
Sbjct: 60  RNAAQTLGNYRLSGCDLYVTIEPC------TMCVGAMVHARIGKIVFGAKEPRAGALESQ 113

Query: 116 LQWLSQ 121
           L+ + +
Sbjct: 114 LRLMDE 119


>gi|148262140|ref|YP_001228846.1| CMP/dCMP deaminase, zinc-binding [Geobacter uraniireducens Rf4]
 gi|146395640|gb|ABQ24273.1| tRNA-adenosine deaminase [Geobacter uraniireducens Rf4]
          Length = 176

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 22/154 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
           V   D  +M +A+R +            +  +IV+DG +I RG     G      HAE+ 
Sbjct: 18  VEKDDVWWMGSAIREAEKAAER--GEVPIGAVIVRDGKIISRGYNLREGKQDPAAHAELI 75

Query: 59  ALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+ +A ++       G T YVTLEPC        C   I+   + +VV    DP    +G
Sbjct: 76  AIRKAAKKLGNWRLAGTTLYVTLEPCIM------CMGAILLARVEKVVFGCYDPKGGAAG 129

Query: 114 RGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
                     L+ +  +V  + ++E    L  + 
Sbjct: 130 SLYDLSDDKRLNHRVTLVAGIRQAECAALLSGFF 163


>gi|167771010|ref|ZP_02443063.1| hypothetical protein ANACOL_02364 [Anaerotruncus colihominis DSM
           17241]
 gi|167666680|gb|EDS10810.1| hypothetical protein ANACOL_02364 [Anaerotruncus colihominis DSM
           17241]
          Length = 151

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 58/151 (38%), Gaps = 21/151 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  FM  ALR +            V  ++V DG ++G G     T      HAE++A++ 
Sbjct: 3   DNDFMGEALRLA--GCAAERGEVPVGAVVVCDGQIVGTGFNRRETGKNALAHAELEAIDA 60

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR--- 114
           A     G        YVTLEPC      P CA  II   IRR+V    DP     G    
Sbjct: 61  ACRRLGGWRLHRCELYVTLEPC------PMCAGAIINARIRRLVFGARDPKSGCFGSVSD 114

Query: 115 -GLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
                 + K  +V  +   E    L A+  +
Sbjct: 115 FNALAFNHKPQVVCGVRGEECAQILSAFFQK 145


>gi|327182903|gb|AEA31350.1| cytidine-deoxycytidylate deaminase [Lactobacillus amylovorus GRL
           1118]
          Length = 168

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 61/163 (37%), Gaps = 24/163 (14%)

Query: 3   VSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAE 56
           +SS D  ++M  A+  ++           +  +IV  DG VIG G            HAE
Sbjct: 2   LSSDDKQKYMQLAIAQAKEAEKQ--GEVPIGAVIVDPDGKVIGTGYNRRELDKDATQHAE 59

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A++EA +          + +VTLEPC      P CA  II   I+ V     DP    
Sbjct: 60  MIAIKEACKNLGMWRLIDCSLFVTLEPC------PMCAGAIINSRIKDVYFGALDPKAGA 113

Query: 112 SGR-----GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            G       ++  +     +  +   +    L  +     +K+
Sbjct: 114 CGSVVDLFTVEKFNHHPHAIRGLYRDQCAQMLKDFFRAIRQKQ 156


>gi|325204006|gb|ADY99459.1| tRNA-specific adenosine deaminase [Neisseria meningitidis
           M01-240355]
          Length = 239

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 60/156 (38%), Gaps = 22/156 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P       FM  ALR +            V  +IV DG +I               HAE+
Sbjct: 87  PPQEEMEHFMCEALRQAEQS--SADGEIPVGAVIVSDGKIIASAHNTCIADCNVSRHAEI 144

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+    +P    +
Sbjct: 145 NALAQAGREIQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGAAEPKTGAA 198

Query: 113 GRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLT 143
           G  +       L+    I   +++ E +  L  +  
Sbjct: 199 GSIVNLFADKRLNTHTAIRGGILQEECRAVLSRFFQ 234


>gi|331701735|ref|YP_004398694.1| CMP/dCMP deaminase zinc-binding protein [Lactobacillus buchneri
           NRRL B-30929]
 gi|329129078|gb|AEB73631.1| CMP/dCMP deaminase zinc-binding protein [Lactobacillus buchneri
           NRRL B-30929]
          Length = 165

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/124 (30%), Positives = 50/124 (40%), Gaps = 17/124 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D+RFM AAL  +     L    P +  ++V DG ++GRG         G  HAE+ A++E
Sbjct: 5   DSRFMKAALIEANKA-YLIGEVP-IGAVVVHDGTIVGRGHNLREHLNDGTAHAEILAIQE 62

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A    R         YVT+EPC        CA  II   I  V     DP    +     
Sbjct: 63  ACRTLRSWRLIDCDLYVTIEPCLM------CAGAIINSRIENVCFGSRDPKAGATRSLYA 116

Query: 118 WLSQ 121
            L  
Sbjct: 117 VLED 120


>gi|91201429|emb|CAJ74489.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 158

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 22/159 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57
             SS    FM  A++ +     +      V  +IV D  +I R             HAE+
Sbjct: 5   SASSNHEYFMRQAIKEAEKAADINEV--PVGAVIVYDNRIIARAHNQREMLKDPTAHAEM 62

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+ +  E        G+T YVTLEPC        CA  +++  I ++V    D      
Sbjct: 63  IAITQGAEYLQNWRLTGSTIYVTLEPC------VMCAGALVQSRIDKLVYGAVDKKAGAC 116

Query: 113 GRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLTRQV 146
              +       L+ +  ++  ++  E +  L  +     
Sbjct: 117 VSVMNLVQNTKLNHRLEVIPDILADECRDILKRFFLENC 155


>gi|302325469|gb|ADL24670.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 155

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 58/149 (38%), Gaps = 22/149 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA--- 63
           M  ALR ++  +        + C+IVKDG+VIG+G            HAE+ A+  A   
Sbjct: 1   MRMALRQAQ--IAFDMKEIPIGCVIVKDGVVIGKGYNQVEQLKDATAHAEIIAIGTAAST 58

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL----- 116
                  G T YVTLEPC      P CA  I+   + R+V    D      G  +     
Sbjct: 59  LDNWRLDGCTLYVTLEPC------PMCAGAILNSRVSRIVYGSPDSRFGGCGTTIDVITG 112

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQ 145
             L +   +   ++  E    L  +  + 
Sbjct: 113 NALKRAVEVTGGILADECLGLLKGFFQQM 141


>gi|312864368|ref|ZP_07724601.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Streptococcus downei F0415]
 gi|311100089|gb|EFQ58300.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Streptococcus downei F0415]
          Length = 157

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 63/158 (39%), Gaps = 24/158 (15%)

Query: 1   MPVSSFDAR--FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
           M   + D +  FM  AL+ ++    L      + C+IVKDG +IGRG  A         H
Sbjct: 1   MADFTHDQKKAFMQEALKEAQKS--LAKEEIPIGCVIVKDGQIIGRGHNAREELNQAIMH 58

Query: 55  AEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AE+ A+ +A +         +  +VT+EPC        C+  I    I +V+    +   
Sbjct: 59  AEIMAINQANQTEGNWRLLDSALFVTIEPC------VMCSGAIGLARIPQVIYGAPNQKF 112

Query: 110 RVSGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
             +G          L+    +   ++E++    +  + 
Sbjct: 113 GAAGSLYDILTDQRLNHHVQVETGILEADCAKIMQDFF 150


>gi|309792074|ref|ZP_07686548.1| deaminase-reductase domain-containing protein [Oscillochloris
           trichoides DG6]
 gi|308225881|gb|EFO79635.1| deaminase-reductase domain-containing protein [Oscillochloris
           trichoides DG6]
          Length = 286

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 84/236 (35%), Gaps = 34/236 (14%)

Query: 146 VEKRSHITLKIAVSQDNMIGMA-----GCGSVPITGFISKNQVHLLRAQSDAILVGIGT- 199
              R +      VS D  I  A     G G V          + L+RA++DAIL G GT 
Sbjct: 43  HADRPYTFTNFVVSHDGRISFAEPGRSGGGPVSRHSPYDTWLMGLIRARADAILTGAGTL 102

Query: 200 ------------VLADDPEL--TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
                         A D       R+   +   P+ +++     L  D+  ++     PV
Sbjct: 103 QVARRHLWTPTQAFASDAHFFADLRMAEGRTPLPLLVVVTNRGDLPPDAAALRGDPQ-PV 161

Query: 246 IIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGR-GVTSLLVEGGAAVAH 300
           +I T       A A   +   + Y     +  DL  L   L  R GV SLL EGGA +  
Sbjct: 162 LIATTPAGATRAYAHLGERPGVRYHISRGETVDLIGLCADLRQRMGVRSLLSEGGALIYG 221

Query: 301 SFINSRLVDSIILYRSQIVIGE----GGIPSPLEEGYL----EKNFMCVRRDYFGS 348
           + +  RLVD   L  S I+IG        PS +E          +   +     G 
Sbjct: 222 ALVAQRLVDETFLTNSPIIIGSPPGRPARPSLIEGVGFSPDDPPHLRLLSLRRAGD 277


>gi|283131399|dbj|BAI63401.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae
           subsp. equisimilis]
          Length = 175

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 19/128 (14%)

Query: 5   SFDAR--FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           S D +  FM  AL+ +   +        + C+IVKDG +IGRG  A         HAE+ 
Sbjct: 4   SLDEQTYFMQEALKEAEKSLQKAE--IPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMM 61

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+ EA            T +VT+EPC        C+  I    I  V+    +     + 
Sbjct: 62  AINEANAHEGNWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVIYGASNQKFGGTD 115

Query: 114 RGLQWLSQ 121
              Q L+ 
Sbjct: 116 SLYQILTD 123


>gi|15676827|ref|NP_273972.1| cytidine and deoxycytidylate deaminase family protein [Neisseria
           meningitidis MC58]
 gi|7226171|gb|AAF41340.1| cytidine and deoxycytidylate deaminase family protein [Neisseria
           meningitidis MC58]
 gi|316985330|gb|EFV64279.1| cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Neisseria meningitidis H44/76]
 gi|325140176|gb|EGC62703.1| tRNA-specific adenosine deaminase [Neisseria meningitidis CU385]
 gi|325200381|gb|ADY95836.1| tRNA-specific adenosine deaminase [Neisseria meningitidis H44/76]
          Length = 239

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 60/156 (38%), Gaps = 22/156 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P       FM  ALR +            V  +IV DG +I               HAE+
Sbjct: 87  PPQEEMEHFMCEALRQAEQS--SADGEIPVGAVIVSDGKIIASAHNTCIADCNVSRHAEI 144

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+    +P    +
Sbjct: 145 NALAQAGREIQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGAAEPKTGAA 198

Query: 113 GRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLT 143
           G  +       L+    I   +++ E +  L  +  
Sbjct: 199 GSIVNLFADKRLNTHTAIRGGILQEECRAVLSRFFQ 234


>gi|161485975|ref|NP_738399.2| hypothetical protein CE1789 [Corynebacterium efficiens YS-314]
 gi|259507401|ref|ZP_05750301.1| riboflavin specific deaminase [Corynebacterium efficiens YS-314]
 gi|259165026|gb|EEW49580.1| riboflavin specific deaminase [Corynebacterium efficiens YS-314]
          Length = 235

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 77/217 (35%), Gaps = 13/217 (5%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD---- 204
           +      +  +       AG  S  +        +  LRA SD +LVG  TV A+D    
Sbjct: 20  QPECRAVLVTTLAGSTS-AGGTSGHLGNDTDTALLLALRAWSDVVLVGASTVRAEDYGGV 78

Query: 205 ----PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
                    R    Q+  P   ++     L   S+    A  AP IIVT+N DP      
Sbjct: 79  VIGEAGREARRRRGQQPVPPIAVISSSLDLDPGSRFFTEAAAAP-IIVTDNTDPSRLAGL 137

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
           +     I+      +  ++  L   G   +  EGGA+V    I++ ++D         + 
Sbjct: 138 QAAGARILQVGTLGVGLVVDKLRQEGFARISCEGGASVYAQMIDAGVIDVWHHTIDPALS 197

Query: 321 GEGGIPSPLEEGYLEKNFMCVRRDYFGSD--VCLEYI 355
           G    P+ +  G  +   + +   +   D  + L Y 
Sbjct: 198 GTVEKPA-VRGGRNQPVALTLEHMHADPDSTLFLRYR 233


>gi|319648541|ref|ZP_08002756.1| YaaJ protein [Bacillus sp. BT1B_CT2]
 gi|317389389|gb|EFV70201.1| YaaJ protein [Bacillus sp. BT1B_CT2]
          Length = 160

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 58/154 (37%), Gaps = 22/154 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
           + D  +M  A+  +R           +  ++V DG +I R      T      HAE+  +
Sbjct: 2   TQDEFYMKEAVNEARKAE--EKGEVPIGAVLVLDGEIIARAHNLRETEQRSVAHAEMLVI 59

Query: 61  EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           EEA           A  YVTLEPC      P CA   +   I +VV    DP    +G  
Sbjct: 60  EEACRKLGTWRLERAVLYVTLEPC------PMCAGAAVLSRIDKVVFGASDPKGGCAGTL 113

Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144
           +  L       +  +V  +ME E    L  +  +
Sbjct: 114 MNLLQEERFNHQAEVVSGVMEEECGRMLSDFFRK 147


>gi|312959178|ref|ZP_07773697.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           fluorescens WH6]
 gi|311286948|gb|EFQ65510.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           fluorescens WH6]
          Length = 165

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 61/160 (38%), Gaps = 22/160 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ-- 58
           S D  FM  AL  +    G       V  ++V+DG +IGRG            HAE+   
Sbjct: 13  SRDQHFMREALALA--AQGAVLGEVPVGAVLVQDGEIIGRGFNCPISGNDPSAHAEMVAI 70

Query: 59  ---ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
              A   +     G+T YVTLEPCS       CA  I+   I RVV    +P   +    
Sbjct: 71  RAAARAISNYRLVGSTLYVTLEPCSM------CAGLIVHSRIARVVYGALEPKAGIVQSQ 124

Query: 116 LQ-----WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
            Q     +L+ + +    ++  E    L  +   +  K  
Sbjct: 125 GQFFTQGFLNHRVLFEGGVLAEECGTVLSEFFKARRAKPP 164


>gi|260893961|ref|YP_003240058.1| CMP/dCMP deaminase zinc-binding protein [Ammonifex degensii KC4]
 gi|260866102|gb|ACX53208.1| CMP/dCMP deaminase zinc-binding protein [Ammonifex degensii KC4]
          Length = 151

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 59/157 (37%), Gaps = 22/157 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEE 66
           M  AL  +            V  + V +G +IGRG     T      HAE+ AL EA ++
Sbjct: 1   MREALSEAEKA--YVRGEVPVGAVAVLNGEIIGRGHNLRETLKDATAHAEILALREAAKK 58

Query: 67  -----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS- 120
                    T Y TLEPC      P CA  +I+  ++RVV    DP    +G  +  L  
Sbjct: 59  IGDWRLEEVTLYTTLEPC------PMCAGALIQFRVKRVVFGAFDPKAGAAGSVVDLLRD 112

Query: 121 ----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHIT 153
                +  +V  ++  E    L  +      +R    
Sbjct: 113 PRFNHQVEVVGGVLAEESGALLKRFFQELRMERRDGR 149


>gi|153877830|ref|ZP_02004382.1| cytosine/adenosine deaminase [Beggiatoa sp. PS]
 gi|152065706|gb|EDN65618.1| cytosine/adenosine deaminase [Beggiatoa sp. PS]
          Length = 156

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 50/132 (37%), Gaps = 19/132 (14%)

Query: 1   MPVS--SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPH 54
           MP++  + D ++M  AL  +            V  +I+     I  G       +    H
Sbjct: 1   MPLNLLNNDKKWMRHALHLAERAAKQ--GEIPVGAVIIHGESCIAEGWNQSILAHDPTAH 58

Query: 55  AEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AE+ AL +A    +       T YVTLEPC        CA  I++  ++RVV    D   
Sbjct: 59  AEIVALRKAAHYLKNYRLIDTTLYVTLEPC------VMCAGAILQARVKRVVFGAYDEKA 112

Query: 110 RVSGRGLQWLSQ 121
             +G     L  
Sbjct: 113 GAAGSRFDILRD 124


>gi|28198227|ref|NP_778541.1| cytosine deaminase [Xylella fastidiosa Temecula1]
 gi|170729545|ref|YP_001774978.1| cytosine deaminase [Xylella fastidiosa M12]
 gi|182680863|ref|YP_001829023.1| CMP/dCMP deaminase zinc-binding [Xylella fastidiosa M23]
 gi|28056297|gb|AAO28190.1| cytosine deaminase [Xylella fastidiosa Temecula1]
 gi|167964338|gb|ACA11348.1| cytosine deaminase [Xylella fastidiosa M12]
 gi|182630973|gb|ACB91749.1| CMP/dCMP deaminase zinc-binding [Xylella fastidiosa M23]
          Length = 165

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 60/164 (36%), Gaps = 22/164 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----TAYGGCPHAE 56
           PV      +M  AL  +          P V  +++  +G ++G G     T++    HAE
Sbjct: 6   PVLPEHTHWMRHALTLAHRAATEFDEIP-VGAVLISPEGTLLGEGCNYNITSHDPSAHAE 64

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL  AG + R     G T YVTLEPC        CA  II   I  ++    DP    
Sbjct: 65  IMALRAAGHQLRNHRMPGCTLYVTLEPCLM------CAMAIIHARIAHLIYAAADPKTGA 118

Query: 112 SGRGLQWL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
            G     L     +    +   ++  E    L  Y   +  +  
Sbjct: 119 CGSTFDILNDPRHNHHVHVYGGLLAEEASRRLTNYFRTKRGQPP 162


>gi|15837614|ref|NP_298302.1| hypothetical protein XF1012 [Xylella fastidiosa 9a5c]
 gi|9105950|gb|AAF83822.1|AE003939_1 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 167

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 58/157 (36%), Gaps = 22/157 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----TAYGGCPHAEVQALEEA 63
            +M  AL  +          P V  +++  +G ++G G     T++    HAE+ AL  A
Sbjct: 15  HWMRHALTLAHRAATEFDEIP-VGAVLISPEGTLLGEGWNYNITSHDPSAHAEIMALRAA 73

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G + R     G T YVTLEPC        CA  II   I  ++    DP     G     
Sbjct: 74  GHQLRNHRMPGCTLYVTLEPCLM------CAMAIIHARIAHLIYAAADPKTGACGSTFDI 127

Query: 119 L-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
           L     +    +   ++  E    L  Y   +  +  
Sbjct: 128 LNDPRHNHHVHVYGGLLAEEASRRLTNYFRTKRGQPP 164


>gi|159794935|pdb|2NX8|A Chain A, The Crystal Structure Of The Trna-Specific Adenosine
           Deaminase From Streptococcus Pyogenes
          Length = 179

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 64/178 (35%), Gaps = 23/178 (12%)

Query: 1   MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
           MP S      FM  AL+ S   +        + C+IVKDG +IGRG  A         HA
Sbjct: 9   MPYSLEEQTYFMQEALKESEKSLQKAE--IPIGCVIVKDGEIIGRGHNAREESNQAIMHA 66

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+ EA            T +VT+EPC        C+  I    I  V+    +    
Sbjct: 67  EMMAINEANAHEGNWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVIYGASNQKFG 120

Query: 111 VSGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163
                 Q      L+ +  +   ++ ++    +  +  +  E++      I    D  
Sbjct: 121 GVDSLYQILTDERLNHRVQVERGLLAADCANIMQTFFRQGRERKKIAKHLIKEQSDPF 178


>gi|332534515|ref|ZP_08410352.1| tRNA-specific adenosine-34 deaminase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036083|gb|EGI72560.1| tRNA-specific adenosine-34 deaminase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 171

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 66/177 (37%), Gaps = 22/177 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M     D+ +M  AL +++    L      V  ++VKD  +I  G     T      HAE
Sbjct: 1   MNEPFNDSYWMEQALLYAKQAELLDE--IPVGAIVVKDNQLISVGYNRSITDNDPSAHAE 58

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ EAG+          T YVTLEPCS       CA  ++   I+R+V    D     
Sbjct: 59  MIAVREAGKVLNNYRLIDCTLYVTLEPCSM------CAGLLVHSRIKRLVFGALDAKTGS 112

Query: 112 SGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163
           +G  +  L       +  +   ++  +    +  +  R+  +           Q N 
Sbjct: 113 AGSIMNLLQEPRLNHQVEVCGGVLAQQCGDTISNFFKRRRAQIKAAKKAARDEQINK 169


>gi|309380104|emb|CBX21515.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 239

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 61/150 (40%), Gaps = 22/150 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             FM  AL  ++    L    P V  +IV DG +I               HAE+ AL +A
Sbjct: 93  EHFMGLALEQAKLSA-LMGEIP-VGAVIVSDGKIIASAHNTCIADCNVSRHAEINALAQA 150

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G E +     G   Y+TLEPC+       CA  +I+  IRRV+    +P    +G  +  
Sbjct: 151 GSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGAAEPKTGAAGSIVNL 204

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYLT 143
                L+    I   +++ E +  L  +  
Sbjct: 205 FADKRLNTHSAIRGGILQEECRAVLSRFFQ 234


>gi|291513963|emb|CBK63173.1| Pyrimidine reductase, riboflavin biosynthesis [Alistipes shahii WAL
           8301]
          Length = 359

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 83/224 (37%), Gaps = 15/224 (6%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL-- 207
             ITL  A + D  +       + I+       V  LRA  DAIL G  T+  DDP L  
Sbjct: 1   MQITLSFATTADGYLDDNSPRRLMISTPEDWEAVLRLRASHDAILAGAETLRRDDPALLL 60

Query: 208 ----TCRLNGLQEHSP--MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
                  L   +   P   ++ L    +LS   +   T   A   + +E + P L     
Sbjct: 61  RDAAARELRRARGMRPDLTKVTLTHSGRLSPSMRFF-TEGDADRYVFSEKELPELKGV-- 117

Query: 262 KKNINIIYCDC-RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
                +I  D       ++T L  RGV  LLVEGGA+V   F+   + D++    +  + 
Sbjct: 118 ---AEVISSDGSITASAIVTELEKRGVERLLVEGGASVLRMFLAEGMADTVRRAVNPQLT 174

Query: 321 GEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQEL 364
                        + +   C R +  G +V    +  +   ++L
Sbjct: 175 LGPERGGAQFRFEVPEGAACRRENLGGMEVATCTLRPDTRDEDL 218



 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/133 (31%), Positives = 61/133 (45%), Gaps = 8/133 (6%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGV-TAYGGCPHAEVQALE- 61
             D R+++ A+      V  + T+  V  ++ + DG     G         HAE +A+  
Sbjct: 215 DEDLRYLTQAVAEGLRCVP-SRTSYCVGAVVALPDGRSF-TGYTHETSPTHHAEQEAIRK 272

Query: 62  --EAGEEARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
             +AG E RGA  Y ++EPCS     P  C Q I+  G  RVV  + +PD  V  RG Q 
Sbjct: 273 ALDAGAELRGAAIYSSMEPCSQRKSEPESCTQLILRHGFARVVFALYEPDRFVRCRGAQT 332

Query: 119 LSQKGIIVDRMME 131
           L + G+ V    E
Sbjct: 333 LREAGVDVRVYPE 345


>gi|315037609|ref|YP_004031177.1| cytidine-deoxycytidylate deaminase [Lactobacillus amylovorus GRL
           1112]
 gi|325956088|ref|YP_004286698.1| cytidine-deoxycytidylate deaminase [Lactobacillus acidophilus 30SC]
 gi|312275742|gb|ADQ58382.1| cytidine-deoxycytidylate deaminase [Lactobacillus amylovorus GRL
           1112]
 gi|325332653|gb|ADZ06561.1| cytidine-deoxycytidylate deaminase [Lactobacillus acidophilus 30SC]
          Length = 168

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 61/163 (37%), Gaps = 24/163 (14%)

Query: 3   VSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAE 56
           +SS D  ++M  A+  ++           +  +IV  DG VIG G            HAE
Sbjct: 2   LSSDDKQKYMQLAIAQAKEAEKQ--GEVPIGAVIVDPDGKVIGTGYNRRELDEDATQHAE 59

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A++EA +          + +VTLEPC      P CA  II   I+ V     DP    
Sbjct: 60  MIAIKEACKNLGMWRLIDCSLFVTLEPC------PMCAGAIINSRIKDVYFGALDPKAGA 113

Query: 112 SGR-----GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            G       ++  +     +  +   +    L  +     +K+
Sbjct: 114 CGSVVDLFTVEKFNHHPHAIRGLYRDQCAQMLKDFFRAIRQKQ 156


>gi|149006819|ref|ZP_01830505.1| deoxyuridine 5'-triphosphate nucleotidohydrolase [Streptococcus
           pneumoniae SP18-BS74]
 gi|307126250|ref|YP_003878281.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae 670-6B]
 gi|147761734|gb|EDK68698.1| deoxyuridine 5'-triphosphate nucleotidohydrolase [Streptococcus
           pneumoniae SP18-BS74]
 gi|306483312|gb|ADM90181.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae 670-6B]
 gi|332076481|gb|EGI86943.1| cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Streptococcus pneumoniae GA17545]
          Length = 155

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 58/149 (38%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  ALR +   + L      + C+IVKDG +IGRG  A         HAE+ A+E+A
Sbjct: 9   EVFMREALREAE--IALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIEDA 66

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I  VV    +     +G     
Sbjct: 67  NLSEESWRLLDCTLFVTIEPC------VMCSGAIGLARIPNVVYGAKNQKFGGAGSLYNI 120

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   ++E E    +  + 
Sbjct: 121 LTDERLNHRVEVEIGILEDECAAIMQDFF 149


>gi|73663465|ref|YP_302246.1| cytosine adenosine deaminase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495980|dbj|BAE19301.1| putative cytosine adenosine deaminase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 163

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 57/161 (35%), Gaps = 22/161 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
             +M  A+  ++   G     P +  +IVK+  +I R             HAE  A++ A
Sbjct: 5   EFYMEVAIEEAKKA-GNIGEVP-IGAIIVKNDEIIARAHNLRESEQNPTAHAEHIAIQRA 62

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                     G T YVTLEPC        CA  I+   I  V+    DP    +G  +  
Sbjct: 63  AAALGSWRLEGCTLYVTLEPC------VMCAGSIVMSRIPSVIYGAKDPKGGCAGSLMNL 116

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL 154
           L       +  +   ++E      L A+     + +  I  
Sbjct: 117 LQEPRFNHRATVEFGILEESCSQLLTAFFKNIRKNKKFIRT 157


>gi|227888770|ref|ZP_04006575.1| nucleoside deaminase [Lactobacillus johnsonii ATCC 33200]
 gi|227850607|gb|EEJ60693.1| nucleoside deaminase [Lactobacillus johnsonii ATCC 33200]
          Length = 160

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 18/123 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEE 62
            ++M  A   ++           +  ++V KDG VIG G            HAE+ A+ +
Sbjct: 8   EKYMHLAFEQAKKAE--EQGEVPIGAVVVDKDGNVIGEGYNRRELDEDATQHAEMIAIRQ 65

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++         + ++TLEPC      P C+  II   +  V     DP    +G  + 
Sbjct: 66  ACKKLNSWRLVDCSLFITLEPC------PMCSGAIINSRLVEVYYGAFDPKAGAAGSVID 119

Query: 118 WLS 120
              
Sbjct: 120 LFK 122


>gi|212695506|ref|ZP_03303634.1| hypothetical protein ANHYDRO_00023 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677506|gb|EEB37113.1| hypothetical protein ANHYDRO_00023 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 180

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 17/122 (13%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALE 61
            D  +M  A+  ++           + C+IVK+G +I R             HAE+ A++
Sbjct: 22  DDYFYMREAINEAKLARL--EEEVPIGCVIVKNGKIIARSHNYTYKGKSALKHAEILAID 79

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           +A +          T YVT+EPCS       CA  II   I R+V+ + D      G   
Sbjct: 80  KASKYVGDFRLEDCTMYVTMEPCSM------CAGAIINSRIDRLVIALADVKRGACGSNT 133

Query: 117 QW 118
             
Sbjct: 134 NI 135


>gi|332971231|gb|EGK10194.1| zinc-binding domain protein [Desmospora sp. 8437]
          Length = 152

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 60/150 (40%), Gaps = 22/150 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA- 63
           ++M  A+R +            +  ++V++G +IGRG            HAE+ A+ EA 
Sbjct: 5   QWMMEAIREAEQAE--AKGEVPIGAVLVREGEIIGRGHNLRESHQDPTAHAEMIAIREAA 62

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW- 118
               G    G   YVTLEPC      P CA  I+   +  ++    DP    +G  +   
Sbjct: 63  RLLGGWRLAGCELYVTLEPC------PMCAGAILLSRLDTLIYGAYDPKGGCAGTLMNLP 116

Query: 119 ----LSQKGIIVDRMMESEGKIFLHAYLTR 144
                + +  +V  ++E E    L  +  +
Sbjct: 117 RDDRFNHQVEVVGGILEQECGELLRDFFRK 146


>gi|312279157|gb|ADQ63814.1| Cytidine/deoxycytidylate deaminase family protein, putative
           [Streptococcus thermophilus ND03]
          Length = 172

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FMS AL+ ++  +        + C+IVKD  ++GRG  A         HAEV A++EA
Sbjct: 10  EIFMSEALKEAQKSLDKAE--IPIGCVIVKDKEIVGRGHNAREELNQAIMHAEVMAIQEA 67

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I +V+    +     +G     
Sbjct: 68  NRTVGNWRLLDCTLFVTIEPC------VMCSGAIGLARIPKVIYGACNQKFGGAGSLYDI 121

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYL 142
           L       +  +   +ME++    +  + 
Sbjct: 122 LRDERLNHRVEVETGVMEADCAKIMQDFF 150


>gi|195977341|ref|YP_002122585.1| tRNA-specific adenosine-34 deaminase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974046|gb|ACG61572.1| tRNA-specific adenosine-34 deaminase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 164

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 54/131 (41%), Gaps = 18/131 (13%)

Query: 1   MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
           M  S  +   FM  AL+ ++  + L    P + C+IVK G +IGRG  A         HA
Sbjct: 1   MSYSKQEQEYFMREALKEAKKSL-LKDEIP-IGCVIVKAGHIIGRGHNAREERNQAIMHA 58

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+ EA            T +VT+EPC        C+  I    I  VV    +    
Sbjct: 59  EIMAISEANVHEGNWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVVYGASNQKFG 112

Query: 111 VSGRGLQWLSQ 121
            +G   Q L+ 
Sbjct: 113 GAGSLYQILTD 123


>gi|330466554|ref|YP_004404297.1| hypothetical protein VAB18032_12915 [Verrucosispora maris
           AB-18-032]
 gi|328809525|gb|AEB43697.1| hypothetical protein VAB18032_12915 [Verrucosispora maris
           AB-18-032]
          Length = 248

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 72/199 (36%), Gaps = 16/199 (8%)

Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203
            +      + +    S D  + +    S  ++G   K    LLR   DA+LV  GT+  +
Sbjct: 28  YRRADTPQLRMNFVTSVDGAVSL-DGYSAGLSGEPDKRVFRLLRMVCDALLVAAGTLRHE 86

Query: 204 ---DPELTCRLNGLQEHS-----PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
                 L  +    +        P  +++     L         A + P +++T +  P 
Sbjct: 87  GYRALRLDEQRRAWRRRHGLAEYPTLVVVSNSLDLDPTQAAFADAPVRP-MVLTRDGAPA 145

Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
                   ++     D  DL   L  L  RG   +L EGG  +  +   + LVD + L  
Sbjct: 146 APGLAAVADLVHCGTDEVDLAVGLAELRRRGFDQVLCEGGPHLFGALTAADLVDEVCLSV 205

Query: 316 SQIVIGEG------GIPSP 328
           + ++ G G      G PSP
Sbjct: 206 APLLAGAGAGRITAGTPSP 224


>gi|307710059|ref|ZP_07646503.1| tRNA-specific adenosine deaminase [Streptococcus mitis SK564]
 gi|307619039|gb|EFN98171.1| tRNA-specific adenosine deaminase [Streptococcus mitis SK564]
          Length = 155

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 57/149 (38%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  ALR +   + L      + C+IVKDG +IGRG  A         HAE+ A+E A
Sbjct: 9   EVFMREALREAE--IALEHDEIPIGCVIVKDGKIIGRGHNAREELQRAVMHAEIMAIENA 66

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I  VV    +     +G     
Sbjct: 67  NLREESWRLLDCTLFVTIEPC------VMCSGAIGLARIPNVVYGAKNQKFGAAGSLYDI 120

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   ++E E    +  + 
Sbjct: 121 LTDERLNHRVEVETGILEDECAAIMQDFF 149


>gi|116628523|ref|YP_821142.1| cytidine/deoxycytidylate deaminase family protein, putative
           [Streptococcus thermophilus LMD-9]
 gi|116101800|gb|ABJ66946.1| tRNA-adenosine deaminase [Streptococcus thermophilus LMD-9]
          Length = 172

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FMS AL+ ++  +        + C+IVKD  ++GRG  A         HAEV A++EA
Sbjct: 10  EIFMSEALKEAQKSLDKAE--IPIGCVIVKDREIVGRGHNAREELNQAIMHAEVMAIQEA 67

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I +V+    +     +G     
Sbjct: 68  NRTVGNWRLLDCTLFVTIEPC------VMCSGAIGLARIPKVIYGACNQKFGGAGSLYDI 121

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYL 142
           L       +  +   +ME++    +  + 
Sbjct: 122 LRDERLNHRVEVETGVMEADCAKIMQDFF 150


>gi|225867781|ref|YP_002743729.1| deaminase [Streptococcus equi subsp. zooepidemicus]
 gi|225701057|emb|CAW97859.1| putative deaminase [Streptococcus equi subsp. zooepidemicus]
          Length = 164

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 54/132 (40%), Gaps = 18/132 (13%)

Query: 1   MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
           M  S  +   FM  AL+ +   + L    P + C+IVK G +IGRG  A         HA
Sbjct: 1   MSYSKQEQEYFMREALKEAEKSL-LKDEIP-IGCVIVKAGHIIGRGHNAREERNQAIMHA 58

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+ EA            T +VT+EPC        C+  I    I  VV    +    
Sbjct: 59  EIMAINEANAHEGNWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVVYGASNQKFG 112

Query: 111 VSGRGLQWLSQK 122
            +G   Q L+ K
Sbjct: 113 GAGSLYQILTDK 124


>gi|55821816|ref|YP_140258.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           thermophilus LMG 18311]
 gi|55737801|gb|AAV61443.1| cytidine/deoxycytidylate deaminase family protein, putative
           [Streptococcus thermophilus LMG 18311]
          Length = 172

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FMS AL+ ++  +        + C+IVKD  ++GRG  A         HAEV A++EA
Sbjct: 10  EIFMSEALKEAQKSLDKAE--IPIGCVIVKDREIVGRGHNAREELNQAIMHAEVMAIQEA 67

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I +V+    +     +G     
Sbjct: 68  NRTVGNWRLLDCTLFVTIEPC------VMCSGAIGLARIPKVIYGACNQKFGGAGSLYDI 121

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYL 142
           L       +  +   +ME++    +  + 
Sbjct: 122 LRDDRLNHRVEVETGVMEADCAKIMQDFF 150


>gi|307704429|ref|ZP_07641340.1| tRNA-specific adenosine deaminase [Streptococcus mitis SK597]
 gi|307707916|ref|ZP_07644391.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           mitis NCTC 12261]
 gi|307615981|gb|EFN95179.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           mitis NCTC 12261]
 gi|307622002|gb|EFO01028.1| tRNA-specific adenosine deaminase [Streptococcus mitis SK597]
          Length = 155

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 57/149 (38%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  ALR +   + L      + C+IVKDG +IGRG  A         HAE+ A+E A
Sbjct: 9   EVFMREALREAE--IALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIENA 66

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I  VV    +     +G     
Sbjct: 67  NLSEESWRLLDCTLFVTIEPC------VMCSGAIGLARIPNVVYGAKNQKFGAAGSLYDI 120

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   ++E E    +  + 
Sbjct: 121 LTDERLNHRVEVETGILEDECAAIMQDFF 149


>gi|15899968|ref|NP_344572.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           pneumoniae TIGR4]
 gi|111657255|ref|ZP_01408023.1| hypothetical protein SpneT_02001535 [Streptococcus pneumoniae
           TIGR4]
 gi|148996424|ref|ZP_01824142.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           pneumoniae SP11-BS70]
 gi|149010880|ref|ZP_01832185.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP19-BS75]
 gi|168492307|ref|ZP_02716450.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
           CDC0288-04]
 gi|168576944|ref|ZP_02722786.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
           MLV-016]
 gi|225855809|ref|YP_002737320.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae P1031]
 gi|307066702|ref|YP_003875668.1| cytosine/adenosine deaminase [Streptococcus pneumoniae AP200]
 gi|14971484|gb|AAK74212.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           pneumoniae TIGR4]
 gi|147756999|gb|EDK64038.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           pneumoniae SP11-BS70]
 gi|147764516|gb|EDK71446.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP19-BS75]
 gi|183573448|gb|EDT93976.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
           CDC0288-04]
 gi|183577431|gb|EDT97959.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
           MLV-016]
 gi|225725405|gb|ACO21257.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae P1031]
 gi|306408239|gb|ADM83666.1| Cytosine/adenosine deaminase [Streptococcus pneumoniae AP200]
 gi|332077311|gb|EGI87772.1| cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Streptococcus pneumoniae GA41301]
 gi|332201950|gb|EGJ16019.1| cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Streptococcus pneumoniae GA41317]
          Length = 155

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 58/149 (38%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  ALR +   + L      + C+IVKDG +IGRG  A         HAE+ A+E+A
Sbjct: 9   EVFMREALREAE--IALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIEDA 66

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I  VV    +     +G     
Sbjct: 67  NLSEESWRLLDCTLFVTIEPC------VMCSGAIGLARIPNVVYGAKNQKFGAAGSLYNI 120

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   ++E E    +  + 
Sbjct: 121 LTDERLNHRVEVEIGILEDECAAIMQDFF 149


>gi|227513704|ref|ZP_03943753.1| possible guanine deaminase [Lactobacillus buchneri ATCC 11577]
 gi|227522506|ref|ZP_03952555.1| possible guanine deaminase [Lactobacillus hilgardii ATCC 8290]
 gi|227083023|gb|EEI18335.1| possible guanine deaminase [Lactobacillus buchneri ATCC 11577]
 gi|227090328|gb|EEI25640.1| possible guanine deaminase [Lactobacillus hilgardii ATCC 8290]
          Length = 157

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 51/126 (40%), Gaps = 17/126 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
           + D RFM  AL  ++    L    P +  +I +DG +IGRG         G  HAE+ A+
Sbjct: 4   NKDERFMKMALIEAQKA-YLIGEVP-IGAVITQDGQIIGRGHNLREHLNDGVAHAEIMAI 61

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           EEA    R         YVT+EPC        C+  I+   I RVV    D         
Sbjct: 62  EEACRYLRSWRLVDCELYVTIEPCLM------CSGAIVNSRIDRVVFGARDKKAGAVRSL 115

Query: 116 LQWLSQ 121
            + L  
Sbjct: 116 YRVLED 121


>gi|239630121|ref|ZP_04673152.1| tRNA-adenosine deaminase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301067271|ref|YP_003789294.1| cytosine/adenosine deaminase [Lactobacillus casei str. Zhang]
 gi|239527733|gb|EEQ66734.1| tRNA-adenosine deaminase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300439678|gb|ADK19444.1| Cytosine/adenosine deaminase [Lactobacillus casei str. Zhang]
          Length = 168

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 63/168 (37%), Gaps = 22/168 (13%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
           +FM AAL  ++    +      +  +IV  G +IGRG     T      HAE+ A++ A 
Sbjct: 8   QFMDAALTEAKKAAAI--GEVPIGAVIVHQGEIIGRGYNLRETTQDATHHAEMLAIQAAC 65

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           +          + +VTLEPC      P CA  +I   +        DP   V+G     L
Sbjct: 66  KTLGTWRLEDCSLFVTLEPC------PMCAGAMINARVATCYFGATDPKAGVAGTFYNLL 119

Query: 120 S-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           +      + ++V  +   E    L  +      KR         S++ 
Sbjct: 120 ADTRFNHQVVVVSGIKADESATLLQTFFRTIRAKRKAAKRAGQTSENQ 167


>gi|157376253|ref|YP_001474853.1| cytidine/deoxycytidylate deaminase family protein [Shewanella
           sediminis HAW-EB3]
 gi|157318627|gb|ABV37725.1| cytidine/deoxycytidylate deaminase family protein [Shewanella
           sediminis HAW-EB3]
          Length = 177

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 58/158 (36%), Gaps = 22/158 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
           M     D  FM+ A+  +            V  ++VKD  V+  G     G      HAE
Sbjct: 1   MTQLDRDIHFMALAMLQAAEAEAR--GEVPVGAVLVKDDKVVAVGSNDCIGQHDPSAHAE 58

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +Q L EAG           T YVTLEPC+       CA  ++   + R+V    D     
Sbjct: 59  MQCLREAGRLVENYRLLDTTLYVTLEPCAM------CAGAMVHSRVSRLVFGAKDEKTGA 112

Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTR 144
           +G  +  +          + + ++E E    L  +  R
Sbjct: 113 AGSVVDLVRHPRFNHQLEVNNGVLEQECSEQLSQFFRR 150


>gi|15902066|ref|NP_357616.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           pneumoniae R6]
 gi|116516620|ref|YP_815440.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           pneumoniae D39]
 gi|148987738|ref|ZP_01819201.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|15457551|gb|AAK98826.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116077196|gb|ABJ54916.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           pneumoniae D39]
 gi|147926202|gb|EDK77275.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP6-BS73]
          Length = 155

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 58/149 (38%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  ALR +   + L      + C+IVKDG +IGRG  A         HAE+ A+E+A
Sbjct: 9   EVFMREALREAE--IALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIEDA 66

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I  VV    +     +G     
Sbjct: 67  NLSEESWRLLDCTLFVTIEPC------VMCSGAIGLARIPNVVYGAKNQKFGAAGSLYDI 120

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   ++E E    +  + 
Sbjct: 121 LTDERLNHRVEVETGILEDECAAIMQDFF 149


>gi|227510688|ref|ZP_03940737.1| possible guanine deaminase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227189809|gb|EEI69876.1| possible guanine deaminase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 157

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/126 (29%), Positives = 51/126 (40%), Gaps = 17/126 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
           + D +FM  AL  ++    L    P +  +I +DG +IGRG         G  HAE+ A+
Sbjct: 4   NKDEKFMKMALIEAQKA-YLIGEVP-IGAVITQDGQIIGRGHNLREHLNDGVAHAEIMAI 61

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           EEA    R         YVT+EPC        C+  I+   I RVV    D         
Sbjct: 62  EEACRYLRSWRLVDCELYVTIEPCLM------CSGAIVNSRIDRVVFGARDKKAGAVRSL 115

Query: 116 LQWLSQ 121
            + L  
Sbjct: 116 YKVLED 121


>gi|91792629|ref|YP_562280.1| CMP/dCMP deaminase, zinc-binding [Shewanella denitrificans OS217]
 gi|91714631|gb|ABE54557.1| CMP/dCMP deaminase, zinc-binding [Shewanella denitrificans OS217]
          Length = 177

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 54/152 (35%), Gaps = 22/152 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
           D  +M  A+  +            V  ++VKD  ++  G       +    HAE+  +  
Sbjct: 21  DEHWMRVAMSMAEEAE--AKGEVPVGAVLVKDNQLLATGFNLSISEHDCSAHAEMACIRA 78

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AG           T YVTLEPC      P CA  ++   I R+V    D     +G  + 
Sbjct: 79  AGTLIENYRLLDTTLYVTLEPC------PMCAGAMVHARIARLVFGATDLKTGAAGSVMN 132

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTR 144
            L   G+     I   ++       L A+  R
Sbjct: 133 LLQHPGLNHQLEITSGVLAEPCAAQLSAFFKR 164


>gi|59801336|ref|YP_208048.1| putative cytosine deaminase [Neisseria gonorrhoeae FA 1090]
 gi|194098422|ref|YP_002001481.1| putative cytosine deaminase [Neisseria gonorrhoeae NCCP11945]
 gi|240080887|ref|ZP_04725430.1| putative cytosine deaminase [Neisseria gonorrhoeae FA19]
 gi|240117796|ref|ZP_04731858.1| putative cytosine deaminase [Neisseria gonorrhoeae PID1]
 gi|240125599|ref|ZP_04738485.1| putative cytosine deaminase [Neisseria gonorrhoeae SK-92-679]
 gi|268597004|ref|ZP_06131171.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae FA19]
 gi|268603495|ref|ZP_06137662.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae PID1]
 gi|268684187|ref|ZP_06151049.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae
           SK-92-679]
 gi|59718231|gb|AAW89636.1| putative cytosine deaminase [Neisseria gonorrhoeae FA 1090]
 gi|193933712|gb|ACF29536.1| putative cytosine deaminase [Neisseria gonorrhoeae NCCP11945]
 gi|268550792|gb|EEZ45811.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae FA19]
 gi|268587626|gb|EEZ52302.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae PID1]
 gi|268624471|gb|EEZ56871.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae
           SK-92-679]
          Length = 239

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 60/156 (38%), Gaps = 22/156 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P       FM  ALR +            V  +IV DG +I               HAE+
Sbjct: 87  PPQEEMGYFMREALRQAEQSA--ADGEIPVGAVIVSDGKIITSAHNTCIADCNVSRHAEI 144

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL +AG E +     G   Y+TLEPC+       CA  +I+  IRRV+    +P    +
Sbjct: 145 NALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGAAEPKTGAA 198

Query: 113 GRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLT 143
           G  +       L+    I   +++ E +  L  +  
Sbjct: 199 GSIVNLFADKRLNTHTAIRGGILQEECRAVLSRFFQ 234


>gi|251783385|ref|YP_002997690.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242392017|dbj|BAH82476.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 175

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 19/128 (14%)

Query: 5   SFDAR--FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           S D +  FM  AL+ +   +        + C+IVKDG +IGRG  A         HAE+ 
Sbjct: 4   SLDEQTYFMQEALKEAEKSLQKAE--IPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMM 61

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+ EA            T +VT+EPC        C+  I    I  V+    +     + 
Sbjct: 62  AINEANAHEGNWRLLDTTMFVTIEPC------VMCSGAIGLARIPHVIYGASNQKFGGTD 115

Query: 114 RGLQWLSQ 121
              Q L+ 
Sbjct: 116 SLYQILTD 123


>gi|315612142|ref|ZP_07887058.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis ATCC
           49296]
 gi|315315805|gb|EFU63841.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis ATCC
           49296]
          Length = 155

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  ALR +   + L      + C+IVKDG +IGRG  A         HAE+ A+E A
Sbjct: 9   EAFMREALREAE--IALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIENA 66

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I +VV    +     +G     
Sbjct: 67  NVSEESWRLLNCTLFVTIEPC------VMCSGAIGLARIPKVVYGAKNQKFGAAGSLYDI 120

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   ++E +    +  + 
Sbjct: 121 LTDERLNHRVEVETGILEDDCVAIMQDFF 149


>gi|313206574|ref|YP_004045751.1| cmp/dcmp deaminase zinc-binding protein [Riemerella anatipestifer
           DSM 15868]
 gi|312445890|gb|ADQ82245.1| CMP/dCMP deaminase zinc-binding protein [Riemerella anatipestifer
           DSM 15868]
 gi|315023430|gb|EFT36438.1| tRNA-specific adenosine-34 deaminase [Riemerella anatipestifer
           RA-YM]
 gi|325335978|gb|ADZ12252.1| Cytosine/adenosine deaminase [Riemerella anatipestifer RA-GD]
          Length = 143

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 57/145 (39%), Gaps = 18/145 (12%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  FM  A + +   +        V C+IV +  VI RG     T      HAE+Q++  
Sbjct: 4   DEYFMRMAFQEAL--IAFEKDEVPVGCVIVHNERVIARGYNLTETLNDVTAHAEMQSITS 61

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G+  +  T YVTLEPC        CA  +    I RVV+   D       + + 
Sbjct: 62  AANALGGKYLKDCTMYVTLEPC------TMCAGALFWSQISRVVIGARDEHRGFLKQNIN 115

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYL 142
              +  I    +ME + +  +  + 
Sbjct: 116 LHPKTQI-SIGIMEDDCRNLVKEFF 139


>gi|224111764|ref|XP_002315970.1| predicted protein [Populus trichocarpa]
 gi|222865010|gb|EEF02141.1| predicted protein [Populus trichocarpa]
          Length = 1071

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 17/120 (14%)

Query: 6    FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
             D  FM  AL  ++     +   P V  ++V  G +I RG            HAE+  + 
Sbjct: 928  IDEMFMREALLDAKKAA-DSWEVP-VGAVMVHHGKIIARGYNLVEELRDSTAHAEMICIR 985

Query: 62   EAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            EA  + R       T YVTLEPC      P CA  I++  I  +V    +  +   G  +
Sbjct: 986  EASNQLRSWRLSETTLYVTLEPC------PMCAGAILQARINTLVWGAPNKLLGADGSWI 1039


>gi|313668625|ref|YP_004048909.1| cytosine deaminase [Neisseria lactamica ST-640]
 gi|313006087|emb|CBN87548.1| putative cytosine deaminase (EC 3.5.4.1) [Neisseria lactamica
           020-06]
          Length = 239

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 22/150 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
           A FM  AL  ++    L    P V  +IV DG +I               HAE+ AL +A
Sbjct: 93  AHFMGLALEQAKLSA-LMGEIP-VGAVIVSDGKIIASAHNTCIADCNVSRHAEINALAQA 150

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G + +     G   Y+TLEPC+       CA  +I+  ++RV+    +P    +G  +  
Sbjct: 151 GSKIQNYRLDGCDIYITLEPCAM------CASALIQARVKRVIYGAGEPKTGAAGSIVNL 204

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYLT 143
                L+    I   +++ E +  L  +  
Sbjct: 205 FADKRLNTHTAIRGGILQEECRAVLSRFFQ 234


>gi|330686241|gb|EGG97853.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Staphylococcus epidermidis VCU121]
          Length = 168

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 56/154 (36%), Gaps = 22/154 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  +M  A+  ++    L      +  +IVK+  VI R      T      HAE  A+
Sbjct: 2   ETDEYYMKIAIEEAKKAELL--GEVPIGAIIVKNNHVIARAHNMRETLQQPTAHAEHLAI 59

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           E A +          T YVTLEPC        CA  I+   I  +     DP    SG  
Sbjct: 60  ERAAKVLGSWRLEDCTLYVTLEPC------VMCAGTIVMSRIPYIKYGAADPKGGCSGSL 113

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYLTR 144
           +  L     + +  +   ++E +    L  +  +
Sbjct: 114 MNLLNQPDFNHRAQVESGLLEEQCGDLLRNFFRK 147


>gi|295425582|ref|ZP_06818269.1| cytidine/deoxycytidylate deaminase [Lactobacillus amylolyticus DSM
           11664]
 gi|295064598|gb|EFG55519.1| cytidine/deoxycytidylate deaminase [Lactobacillus amylolyticus DSM
           11664]
          Length = 166

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 25/157 (15%)

Query: 3   VSSFDAR--FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHA 55
           + S D +  +M  A+  ++           +  ++V  DG V+G+G            HA
Sbjct: 1   MLSNDEKKKYMQLAIIEAKKAERQDEV--PIGAIVVAPDGQVVGKGYNRRELDQDATQHA 58

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+ EA +          + +VTLEPC      P CA  II   I+ V     DP   
Sbjct: 59  EMIAIREACKNIGFWRLIDCSLFVTLEPC------PMCAGAIINARIKDVYFGAMDPKAG 112

Query: 111 VSGR-----GLQWLSQKGIIVDRMMESEGKIFLHAYL 142
            +G       ++  +    ++  + + E    L  + 
Sbjct: 113 AAGSVVDLFTVEKFNHHPQVIRGLYQDECSQMLTDFF 149


>gi|145222554|ref|YP_001133232.1| hypothetical protein Mflv_1964 [Mycobacterium gilvum PYR-GCK]
 gi|315443001|ref|YP_004075880.1| pyrimidine reductase, riboflavin biosynthesis [Mycobacterium sp.
           Spyr1]
 gi|145215040|gb|ABP44444.1| bifunctional deaminase-reductase domain protein [Mycobacterium
           gilvum PYR-GCK]
 gi|315261304|gb|ADT98045.1| pyrimidine reductase, riboflavin biosynthesis [Mycobacterium sp.
           Spyr1]
          Length = 235

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 70/195 (35%), Gaps = 16/195 (8%)

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLAD---------DPELTCRLNGLQEHSPMRII 223
           P++       +  LRA +D +LVG GT  A+         D     R  GL    P   +
Sbjct: 45  PLSCPADYQLLLALRAYADVVLVGAGTARAESYGPVALRPDHRDQRRELGLGVQPPPLAV 104

Query: 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV 283
           +    +L      I    + P++I +         + ++  I +   D  D+   +  L 
Sbjct: 105 VSRSGRLPES---IFAGPVPPILITSAQGAQE--CSEKRCQIVVSGDDAVDVAGAVHQLR 159

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
             G+  +L EGG  +    + + LVD + +  +  + G   + S           M + R
Sbjct: 160 SDGMERVLCEGGPTLLDELVTADLVDELCVTLAPRLAGSQPVGSGTPADIAAPAPMRLGR 219

Query: 344 DYFGSD--VCLEYIG 356
                D  + L Y  
Sbjct: 220 VLVDPDGYLFLTYRR 234


>gi|325577729|ref|ZP_08148004.1| tRNA-specific adenosine deaminase [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160474|gb|EGC72600.1| tRNA-specific adenosine deaminase [Haemophilus parainfluenzae ATCC
           33392]
          Length = 172

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 63/174 (36%), Gaps = 23/174 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAEV 57
            S  D +FM  AL  +     L      V  ++V  +G ++G G            HAE+
Sbjct: 2   WSDLDEKFMQHALMLADRAEAL--GEIPVGAVLVGDEGNILGEGWNLSIIENDPTAHAEI 59

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL  A +  +       T YVTLEPC        CA  I+   I+R+V    D      
Sbjct: 60  VALRNAAQNIQNYRLLNTTLYVTLEPC------TMCAGAILHSRIKRLVFGASDYKTGAV 113

Query: 113 GRGLQ-----WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           G          ++    I   ++  +    L  +  ++ E++     +  +  D
Sbjct: 114 GSRFHFFDDYKMNHALEITSGVLAEKCGQKLSDFFKKRREQKKEEKREKNLPLD 167


>gi|118472351|ref|YP_887118.1| hypothetical protein MSMEG_2787 [Mycobacterium smegmatis str. MC2
           155]
 gi|118173638|gb|ABK74534.1| putative riboflavin biosynthesis protein RibD [Mycobacterium
           smegmatis str. MC2 155]
          Length = 260

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 89/234 (38%), Gaps = 20/234 (8%)

Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIG 198
             Y      ++  +   + VS D         S  + G   +   +L+R  +D IL+G  
Sbjct: 30  RFYAYPDDLRKCRVRANMIVSLDG-AATQDGKSGGLGGAGDRAVFNLMRETADVILMGAS 88

Query: 199 TVLADD--------PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
           TV  ++        P+   R    Q   P   I+     L  D+KI     + P+I+ T 
Sbjct: 89  TVRIENYSGVQLSVPQRQARQRRGQAEVPPIAIVTASADLEPDAKIFTRTEVRPLILTTA 148

Query: 251 N--DDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           +   D    L    + ++    D    D  + L IL  R +  +L EGG ++    I   
Sbjct: 149 HTVSDARRRLGGVAEVLDASGADRTRVDPARALQILAERKLFRVLTEGGPSLLGLLIEHD 208

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD----VCLEYIG 356
           L+D + L  + +++G G   +P     + +    +R  +  +D    +   Y+ 
Sbjct: 209 LLDELCLTIAPVLVGGG---APRIAAGIGQARTRMRVSHLLTDDEGYLYTRYVR 259


>gi|17546170|ref|NP_519572.1| hydrolase [Ralstonia solanacearum GMI1000]
 gi|17428466|emb|CAD15153.1| putative cytosine/adenosine deaminase protein [Ralstonia
           solanacearum GMI1000]
          Length = 183

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 17/130 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56
           M     D  +M  AL  +R   G       V  ++V+   ++G G  A  G      HAE
Sbjct: 13  MSAHERDGYWMQQALVQARLAWG--EGEVPVGAVVVRGNEIVGVGYNAPIGTHDPSAHAE 70

Query: 57  VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           ++AL +A              +VTLEPC        CA  ++   + RVV    DP    
Sbjct: 71  MRALRQAAVRLGNYRLPECEVFVTLEPC------VMCAGAMLHARVARVVYGAPDPKTGA 124

Query: 112 SGRGLQWLSQ 121
           +G  L   ++
Sbjct: 125 AGSVLDLFAE 134


>gi|260654860|ref|ZP_05860348.1| tRNA-specific adenosine deaminase [Jonquetella anthropi E3_33 E1]
 gi|260630362|gb|EEX48556.1| tRNA-specific adenosine deaminase [Jonquetella anthropi E3_33 E1]
          Length = 166

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 57/148 (38%), Gaps = 23/148 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGG----CPHAEVQALEEA- 63
            M  AL  +R           V  ++V + G +IGRG            HAE+ AL EA 
Sbjct: 1   MMEQALCEARRA--FAGGEVPVGAVVVDEKGNIIGRGYNLRAALHDPTAHAEIVALREAA 58

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
               G    G + +VTLEPC      P CA  +++  I RVV    D      G     L
Sbjct: 59  QALGGWNLSGCSLFVTLEPC------PMCAGALVQARIARVVFGCRDERAGACGSLYSIL 112

Query: 120 S-----QKGIIVDRMMESEGKIFLHAYL 142
                  +  + + +M  E +  L ++ 
Sbjct: 113 RDGRLNHRCDVAEGLMADECRSLLQSFF 140


>gi|225869728|ref|YP_002745675.1| deaminase [Streptococcus equi subsp. equi 4047]
 gi|225699132|emb|CAW92326.1| putative deaminase [Streptococcus equi subsp. equi 4047]
          Length = 164

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 53/131 (40%), Gaps = 18/131 (13%)

Query: 1   MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
           M  S  +   FM  AL+ +   + L    P + C+IVK G +IGRG  A         HA
Sbjct: 1   MSYSKQEQEYFMREALKEAEKSL-LKDEIP-IGCVIVKAGHIIGRGHNAREERNQAIMHA 58

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+ EA            T +VT+EPC        C+  I    I  VV    +    
Sbjct: 59  EIMAINEANAHEGNWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVVYGASNQKFG 112

Query: 111 VSGRGLQWLSQ 121
            +G   Q L+ 
Sbjct: 113 GAGSLYQILTD 123


>gi|332522875|ref|ZP_08399127.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332314139|gb|EGJ27124.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 176

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 24/155 (15%)

Query: 5   SFDAR--FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           S D +  FM  AL+ +     L      + C+IVK+G +IGRG  A         HAE+ 
Sbjct: 4   SQDEKEFFMREALKEAEKS--LVKAEIPIGCVIVKEGKIIGRGHNAREELNQAIMHAEIM 61

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+ EA            + +VT+EPC        C+  I    I  V+    +     +G
Sbjct: 62  AINEANVHEGNWRLLETSLFVTIEPC------VMCSGAIGLARIPHVIFGAPNQKFGGAG 115

Query: 114 RGLQW-----LSQKGIIVDRMMESEGKIFLHAYLT 143
              Q      L+ +  +   ++E+E    +  +  
Sbjct: 116 SLYQILTDQRLNHRVELESGLLEAECAQIMQDFFH 150


>gi|50122182|ref|YP_051349.1| tRNA-specific adenosine deaminase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612708|emb|CAG76158.1| putative cytidine and deoxycytidylate deaminase [Pectobacterium
           atrosepticum SCRI1043]
          Length = 174

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 57/156 (36%), Gaps = 22/156 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  AL  ++           V  ++V D   IG G     G      HAE+ AL + 
Sbjct: 14  EYWMRYALTLAQRAQ--DEGEVPVGAVLVLDNEAIGEGWNRPIGHHDPTAHAEIMALRQG 71

Query: 64  GEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +       T YVTLEPC        CA  +I   I R+V    D     +G  +  
Sbjct: 72  GLVLQNYRLLETTLYVTLEPCIM------CAGAMIHSRIGRLVYGASDEKTGAAGSLVDI 125

Query: 119 LSQKG-----IIVDRMMESEGKIFLHAYLTRQVEKR 149
           L   G     +I   ++  E    L A+   + E+ 
Sbjct: 126 LRHPGMNHQIVIESGVLADECSATLSAFFRMRREQH 161


>gi|225860063|ref|YP_002741572.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298229197|ref|ZP_06962878.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298254029|ref|ZP_06977615.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298501811|ref|YP_003723751.1| cytosine deaminase [Streptococcus pneumoniae TCH8431/19A]
 gi|225728250|gb|ACO24101.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298237406|gb|ADI68537.1| possible cytosine deaminase [Streptococcus pneumoniae TCH8431/19A]
 gi|327390436|gb|EGE88776.1| cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Streptococcus pneumoniae GA04375]
          Length = 155

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 58/149 (38%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  ALR +   + L      + C+IVKDG +IGRG  A         HAE+ A+E+A
Sbjct: 9   EVFMREALREAE--IALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIEDA 66

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I  VV    +     +G     
Sbjct: 67  NLSKESWRLLDCTLFVTIEPC------VMCSGAIGLARIPNVVYGAKNQKFGAAGSLYDI 120

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   ++E E    +  + 
Sbjct: 121 LTDERLNHRVEVEIGILEDECAAIMQDFF 149


>gi|320527136|ref|ZP_08028323.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Solobacterium moorei F0204]
 gi|320132464|gb|EFW25007.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Solobacterium moorei F0204]
          Length = 164

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 54/149 (36%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             +M  AL  +R    +      V C+IV DG VI RG            HAE+ A+++A
Sbjct: 5   EEYMELALEEARKAEEIDEV--PVGCVIVCDGEVISRGHNLKEQLNQAYAHAEMMAIQKA 62

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG----- 113
            E            YVTLEPC        C   I    IR V     DP           
Sbjct: 63  AEVKGNWCLNDCDLYVTLEPCMM------CTGIINLSRIRTVYYGTQDPKGGCLETVIDL 116

Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
           + +  L+    IV  +++ E    L  Y 
Sbjct: 117 KKINRLNHYPNIVGNILQKECSEILTNYF 145


>gi|220919906|ref|YP_002495209.1| CMP/dCMP deaminase zinc-binding [Methylobacterium nodulans ORS
           2060]
 gi|219952326|gb|ACL62717.1| CMP/dCMP deaminase zinc-binding [Methylobacterium nodulans ORS
           2060]
          Length = 160

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 15/116 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
           ++  D +FM+ A+  S     + S      C+IV+DG ++  G            H E++
Sbjct: 1   MTDDDKKFMARAIELSEKTSLVESAGGVFGCVIVQDGEILAEGANRVVAENDPTWHGEIE 60

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           A+ +A +     + R AT Y + EPC      P C       GI+ +     + D 
Sbjct: 61  AIRKACKAQGSFKLRDATLYTSAEPC------PMCMAAAYWAGIKAIYYAATNEDA 110


>gi|283131456|dbj|BAI63455.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae
           subsp. equisimilis]
          Length = 183

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 19/128 (14%)

Query: 5   SFDAR--FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           S D +  FM  AL+ +   +        + C+IVKDG +IGRG            HAE+ 
Sbjct: 12  SLDEQTYFMQEALKEAEKSLQKAE--IPIGCVIVKDGEIIGRGHNVREESNQAIMHAEMM 69

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+ EA            T +VT+EPC        C+  I    I  V+    +     + 
Sbjct: 70  AINEANAHEGNWRLLDTTMFVTIEPC------VMCSGAIGLARIPHVIYGASNQKFGGTD 123

Query: 114 RGLQWLSQ 121
              Q L+ 
Sbjct: 124 SLYQILTD 131


>gi|282849118|ref|ZP_06258503.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Veillonella parvula ATCC 17745]
 gi|282580822|gb|EFB86220.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Veillonella parvula ATCC 17745]
          Length = 181

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 61/177 (34%), Gaps = 22/177 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           M   S D  FM  AL  +     L      +  ++V++  +I R             HAE
Sbjct: 13  MDERSRDEYFMGFALEEAHKAYAL--GEIPIGAILVQNNTIISRHHNRRELDHDATAHAE 70

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           V  + EA +  +     G T YVT+EPC      P CA  II   I RVV    D     
Sbjct: 71  VLVIREACDVLKRWRLTGCTLYVTIEPC------PMCAGAIINSRIDRVVYGASDYKGGA 124

Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163
                  LS  G+     +   ++  E    +  +   + + R         + +  
Sbjct: 125 VESLFNVLSHPGLNHEPELASGVLGDECSQIMKDFFKERRKTRRSTQEAEGSALEMR 181


>gi|227877638|ref|ZP_03995691.1| nucleoside deaminase [Lactobacillus crispatus JV-V01]
 gi|227862786|gb|EEJ70252.1| nucleoside deaminase [Lactobacillus crispatus JV-V01]
          Length = 185

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 58/156 (37%), Gaps = 24/156 (15%)

Query: 3   VSSFDAR-FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAE 56
           +SS D R +M  A+  ++           +  ++V  DG V+G G            HAE
Sbjct: 21  LSSEDKRKYMQLAIDQAKEAEKQ--GEVPIGAVVVDPDGRVVGTGYNRRELDEDATQHAE 78

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A++EA  +         + +VTLEPC      P CA  II   I+ V     DP    
Sbjct: 79  MIAIKEACSKLGMWRLIDCSLFVTLEPC------PMCAGAIINSRIKDVYFGALDPKAGA 132

Query: 112 SGR-----GLQWLSQKGIIVDRMMESEGKIFLHAYL 142
            G       ++  +     +  +   +    L  + 
Sbjct: 133 CGSVVDLFSVEKFNHHPHAIRGLYRDQCAQMLKDFF 168


>gi|182418731|ref|ZP_02950004.1| tRNA-specific adenosine deaminase [Clostridium butyricum 5521]
 gi|237669698|ref|ZP_04529675.1| tRNA-specific adenosine deaminase [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377425|gb|EDT74981.1| tRNA-specific adenosine deaminase [Clostridium butyricum 5521]
 gi|237654772|gb|EEP52335.1| tRNA-specific adenosine deaminase [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 149

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 19/126 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  +IVKDG++IGRG            HAE+ A++EA          GA  YVTLEPC 
Sbjct: 21  PVGAVIVKDGVIIGRGHNLKETLNDVTAHAEILAIKEASNNLGDWRLDGAEMYVTLEPC- 79

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG----IIVDRMMESEGKI 136
                P CA  I++  I +V +   + D+   G  +  L  +     + V  + + E   
Sbjct: 80  -----PMCASAIVQSRISKVYIGTFNKDMGACGSVISLLDSRRLNSFVDVKWLYDKECSE 134

Query: 137 FLHAYL 142
           FL  + 
Sbjct: 135 FLVKFF 140


>gi|293364574|ref|ZP_06611295.1| tRNA-specific adenosine deaminase [Streptococcus oralis ATCC 35037]
 gi|307702826|ref|ZP_07639774.1| tRNA-specific adenosine deaminase [Streptococcus oralis ATCC 35037]
 gi|291316832|gb|EFE57264.1| tRNA-specific adenosine deaminase [Streptococcus oralis ATCC 35037]
 gi|307623506|gb|EFO02495.1| tRNA-specific adenosine deaminase [Streptococcus oralis ATCC 35037]
          Length = 155

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 57/149 (38%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  ALR +   + L      + C+IVKDG +IGRG  A         HAE+ A+E A
Sbjct: 9   EAFMREALREAE--IALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIENA 66

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I  VV    +     +G     
Sbjct: 67  NVSEESWRLLDCTLFVTIEPC------VMCSGAIGLARIPNVVYGAKNQKFGAAGSLYDI 120

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   ++E +    +  + 
Sbjct: 121 LTDERLNHRVEVETGILEDDCAAIMQDFF 149


>gi|297559747|ref|YP_003678721.1| CMP/dCMP deaminase zinc-binding protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844195|gb|ADH66215.1| CMP/dCMP deaminase zinc-binding protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 156

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/125 (32%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYG-GCPHAEVQALEE 62
             DAR++   +  SR     + T  SV C ++  DG V+G G +       HAE  AL E
Sbjct: 11  ESDARWLRRTVELSR-SCPPSDTAFSVGCAVVAADGTVLGEGYSRRDDPHDHAEEAALRE 69

Query: 63  AGEE---ARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
              +     GAT Y +LEPCS     P  C+  I+   + RVV    +P V V   G + 
Sbjct: 70  VDADDPRLAGATLYSSLEPCSSRASRPLSCSALILATPVARVVFAWREPSVFVDCDGAER 129

Query: 119 LSQKG 123
           L   G
Sbjct: 130 LRAAG 134


>gi|323488468|ref|ZP_08093714.1| hypothetical protein GPDM_03987 [Planococcus donghaensis MPA1U2]
 gi|323397860|gb|EGA90660.1| hypothetical protein GPDM_03987 [Planococcus donghaensis MPA1U2]
          Length = 162

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 51/156 (32%), Gaps = 22/156 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           M     D  +M  A+  +            +  +IV    VI R             HAE
Sbjct: 1   MNEMEKDHFYMQLAIEEANKAA--AKGEVPIGAVIVYKDEVIARAHNLRETTNNAVTHAE 58

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A++EA              YVTLEPC      P CA  I++  I  +V    D     
Sbjct: 59  LLAIQEACLHLGNWRLEDTKLYVTLEPC------PMCAGAILQSRIPHIVYGARDAKAGC 112

Query: 112 SGRGLQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
                + L     + +  + + ++  E    L  + 
Sbjct: 113 VDSLYRLLNDDRFNHQCQVTENVLADECGQLLTQFF 148


>gi|240169734|ref|ZP_04748393.1| hypothetical protein MkanA1_10502 [Mycobacterium kansasii ATCC
           12478]
          Length = 264

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 77/237 (32%), Gaps = 18/237 (7%)

Query: 120 SQKGIIVDRMMES---EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
              GI +  +      +       Y          +      S D    +AG        
Sbjct: 12  RSAGIRLTLLGSDRTLDEADLPEYYRYPPDVNGIWLRANFISSVDGGATVAGTSGGLGGP 71

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADD---PELTC---RLNGLQEHS--PMRIILDPHF 228
              +    LLR  +D I+VG GTV  +     +L+    R   L+  S  P   I+    
Sbjct: 72  -GDRAVFRLLRELADVIVVGAGTVRVEGYSGAQLSVAARRQRQLRGQSEVPQLAIVTKSG 130

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL-----KKLLTILV 283
            L+ D  +     + P+++                   ++ C   D        LL  L 
Sbjct: 131 HLARDLAVFTRTEVPPLVLTATAVADETRRGLTGL-AEVVDCSDTDPVKVDEAVLLARLA 189

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
            RG+  +L EGG  +  SFI   L+D + L  +  V+G          G L+    C
Sbjct: 190 ERGLRRILTEGGPILLGSFIERGLLDELCLTIAPFVVGGLARRIVTGPGQLKTPMRC 246


>gi|152978402|ref|YP_001344031.1| CMP/dCMP deaminase zinc-binding [Actinobacillus succinogenes 130Z]
 gi|150840125|gb|ABR74096.1| CMP/dCMP deaminase zinc-binding [Actinobacillus succinogenes 130Z]
          Length = 182

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 57/171 (33%), Gaps = 22/171 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHAE 56
             ++ D  FM+ AL  +     L      V  ++V     +IG G            HAE
Sbjct: 8   NQTTLDEFFMNHALALADKARML--GEIPVGAVLVDEHNQIIGEGWNLSIIHSDPTAHAE 65

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL    ++ +       T YVTLEPC        CA  I+   I+R+V    D     
Sbjct: 66  IVALRRGAQKIQNYRLLNCTLYVTLEPC------TMCAGAILHSRIKRLVFGAADEKTGA 119

Query: 112 SGRGLQWLSQ----KGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAV 158
            G    +         I V   + +E      +   +   ++  +      
Sbjct: 120 VGSRFHFFEDYKMNHVIEVTGGVLAEKCGQKLSDFFKMRRQQQKMKKSARQ 170


>gi|304398612|ref|ZP_07380484.1| CMP/dCMP deaminase zinc-binding [Pantoea sp. aB]
 gi|304353823|gb|EFM18198.1| CMP/dCMP deaminase zinc-binding [Pantoea sp. aB]
          Length = 155

 Score = 83.8 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 59/162 (36%), Gaps = 21/162 (12%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEE 66
           M  AL  +R     +     V  ++V++  VIG G     G      HAE+ AL + G+ 
Sbjct: 1   MRHALGLARRAWEQSEV--PVGAVLVQNDQVIGEGWNRPIGQHDPTAHAEIMALRQGGKV 58

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                    T YVTLEPC        CA  ++   I R+V    D     +G  L  L  
Sbjct: 59  LENYRLLDTTLYVTLEPC------VMCAGAMVHSRITRLVYGAHDVKSGAAGSLLDVLGH 112

Query: 122 KG----IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
            G    I +   + +E    + +   R   ++     +    
Sbjct: 113 PGMNHQIELHSGVLAEECAAMLSDFFRMRREQKKALRQAQRQ 154


>gi|329897048|ref|ZP_08271820.1| tRNA-specific adenosine-34 deaminase [gamma proteobacterium
           IMCC3088]
 gi|328921488|gb|EGG28874.1| tRNA-specific adenosine-34 deaminase [gamma proteobacterium
           IMCC3088]
          Length = 159

 Score = 83.8 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 17/125 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
           + D  +M  AL  +            V C+IV+DG +I  G      +     HAE+ AL
Sbjct: 2   NEDEYWMRQALLQAEQAYAC--GEVPVGCVIVRDGSLIASGHNVVISSADPSAHAEIVAL 59

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             AG          A+ YVTLEPC        C   ++   ++R++    +P        
Sbjct: 60  RHAGSRIGNYRLVDASLYVTLEPCLM------CVGAMVHARVQRLIFAATEPKAGAVCSR 113

Query: 116 LQWLS 120
            + L+
Sbjct: 114 CEALN 118


>gi|329117262|ref|ZP_08245979.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Streptococcus parauberis NCFD 2020]
 gi|326907667|gb|EGE54581.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Streptococcus parauberis NCFD 2020]
          Length = 169

 Score = 83.8 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  ALR +     L      + C+IVKDG +IGRG  A         HAE+ A+ +A
Sbjct: 9   ENFMREALREAEKS--LAKEEIPIGCVIVKDGQIIGRGHNAREELNQAIMHAEMMAISQA 66

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I +V+    +     +    Q 
Sbjct: 67  NAHEGNWRLLETTMFVTIEPC------VMCSGAIGLARIPKVIYGAANQKFGGAQSLYQI 120

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   ++E++    + ++ 
Sbjct: 121 LTDERLNHRVELETGVLEADCAAIMQSFF 149


>gi|121634737|ref|YP_974982.1| putative cytosine deaminase [Neisseria meningitidis FAM18]
 gi|120866443|emb|CAM10189.1| putative cytosine deaminase (EC 3.5.4.1) [Neisseria meningitidis
           FAM18]
 gi|325132183|gb|EGC54879.1| tRNA-specific adenosine deaminase [Neisseria meningitidis M6190]
 gi|325136130|gb|EGC58739.1| tRNA-specific adenosine deaminase [Neisseria meningitidis M0579]
 gi|325198167|gb|ADY93623.1| tRNA-specific adenosine deaminase [Neisseria meningitidis G2136]
 gi|325202278|gb|ADY97732.1| tRNA-specific adenosine deaminase [Neisseria meningitidis
           M01-240149]
          Length = 239

 Score = 83.8 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 62/150 (41%), Gaps = 22/150 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
           A FM  AL  ++    L    P V  +IV DG +I               HAE+ AL +A
Sbjct: 93  AHFMGLALEQAKLSA-LMGEIP-VGAVIVSDGKIIASAHNTCIADCNVSRHAEINALAQA 150

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G E +     G   Y+TLEPC+       CA  +I+  IRRV+    +P    +G  +  
Sbjct: 151 GSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGAAEPKTGAAGSIVNL 204

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYLT 143
                L+    I   +++ E +  L  +  
Sbjct: 205 FADKRLNTHTAIRGGILQEECRAVLSRFFQ 234


>gi|114320177|ref|YP_741860.1| tRNA-adenosine deaminase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226571|gb|ABI56370.1| tRNA-adenosine deaminase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 164

 Score = 83.8 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 47/123 (38%), Gaps = 17/123 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
             D R+M  AL  +       +    V  ++V D   +  G    +TA     HAEV AL
Sbjct: 13  PEDIRWMRRALALADQAE--AAGEVPVGAVLVLDDREVAVGSNQPITARDPTAHAEVVAL 70

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             AGE        G T YVTLEPC        C   II   ++RVV    DP     G  
Sbjct: 71  RRAGEVLGAYRLSGTTLYVTLEPC------TMCIGAIIHARVKRVVFAASDPKTGACGSV 124

Query: 116 LQW 118
              
Sbjct: 125 FAL 127


>gi|148543562|ref|YP_001270932.1| tRNA-adenosine deaminase [Lactobacillus reuteri DSM 20016]
 gi|184152969|ref|YP_001841310.1| cytosine/adenosine deaminase [Lactobacillus reuteri JCM 1112]
 gi|227363478|ref|ZP_03847600.1| tRNA-adenosine deaminase [Lactobacillus reuteri MM2-3]
 gi|325681912|ref|ZP_08161430.1| tRNA-specific adenosine deaminase [Lactobacillus reuteri MM4-1A]
 gi|148530596|gb|ABQ82595.1| tRNA-adenosine deaminase [Lactobacillus reuteri DSM 20016]
 gi|183224313|dbj|BAG24830.1| cytosine/adenosine deaminase [Lactobacillus reuteri JCM 1112]
 gi|227071492|gb|EEI09793.1| tRNA-adenosine deaminase [Lactobacillus reuteri MM2-3]
 gi|324978556|gb|EGC15505.1| tRNA-specific adenosine deaminase [Lactobacillus reuteri MM4-1A]
          Length = 170

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 52/149 (34%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
            +FM  A+  ++    L      +  ++V DG VIGRG            HAE+ A+ EA
Sbjct: 12  QKFMKMAIAEAKQARILDEV--PIGAIVVHDGQVIGRGHNMREKFQDVTYHAEMLAIMEA 69

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                         YVTLEPC        C+  II   I+ V     DP           
Sbjct: 70  CTNLGSWRLEDCDLYVTLEPCIM------CSGAIINARIKNVYYGAADPKAGAVDSLYHL 123

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   ++  E    L  + 
Sbjct: 124 LSDSRLNHQVNVHSGILGDECSQMLKNFF 152


>gi|194468109|ref|ZP_03074095.1| CMP/dCMP deaminase zinc-binding [Lactobacillus reuteri 100-23]
 gi|194452962|gb|EDX41860.1| CMP/dCMP deaminase zinc-binding [Lactobacillus reuteri 100-23]
          Length = 170

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 52/149 (34%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
            +FM  A+  ++    L      +  ++V DG VIG G            HAE+ A+ EA
Sbjct: 12  QKFMKMAIAEAKQARILDEV--PIGAIVVHDGQVIGCGHNMREKFQDVTYHAEMLAIMEA 69

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                         YVTLEPC        C+  II   I+ V     DP           
Sbjct: 70  CTNLESWRLEDCDLYVTLEPCIM------CSGAIINARIKNVYYGATDPKAGAVDSLYHL 123

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   ++E E    L  + 
Sbjct: 124 LSDSRLNHQVNVHSGILEDECSQMLKNFF 152


>gi|319638138|ref|ZP_07992901.1| cytidine and deoxycytidylate deaminase [Neisseria mucosa C102]
 gi|317400411|gb|EFV81069.1| cytidine and deoxycytidylate deaminase [Neisseria mucosa C102]
          Length = 240

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 50/130 (38%), Gaps = 17/130 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P+ +    FM  A+  +R    L      V  +IV  G  I        G      HAE+
Sbjct: 87  PLQNDMEAFMRLAIEQARQSAAL--GEVPVGAVIVYQGKAIAAAHNTCIGDHNVSHHAEI 144

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL  AG+            Y+TLEPC+       CA  +I+  + RV+    +P    +
Sbjct: 145 NALAAAGKALQNYRLEDCDVYITLEPCAM------CASALIQARVGRVIYGAAEPKTGAA 198

Query: 113 GRGLQWLSQK 122
           G  +   + K
Sbjct: 199 GSVVDLFADK 208


>gi|329768262|ref|ZP_08259763.1| hypothetical protein HMPREF0428_01460 [Gemella haemolysans M341]
 gi|328837461|gb|EGF87090.1| hypothetical protein HMPREF0428_01460 [Gemella haemolysans M341]
          Length = 155

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 56/148 (37%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAG 64
            +M  AL  +R           +  ++V DG VI +             HAE+ A++EA 
Sbjct: 6   YYMEMALEEARRA--YAKGEVPIGAVLVVDGEVIAKAHNTREEHQQALNHAEMLAIKEAC 63

Query: 65  EE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL--- 116
           E+        +  Y T+EPC        C+  I++  +  V+    DP     G  +   
Sbjct: 64  EKQGFWRLDNSYLYTTVEPC------VMCSGAIVQARVENVIYGASDPKYGCCGSCIDLV 117

Query: 117 --QWLSQKGIIVDRMMESEGKIFLHAYL 142
                + +  ++  ++E E  + +  + 
Sbjct: 118 GENKFNHQAEVISGVLEEECSMLMKNFF 145


>gi|322388496|ref|ZP_08062098.1| tRNA-specific adenosine deaminase [Streptococcus infantis ATCC
           700779]
 gi|321140614|gb|EFX36117.1| tRNA-specific adenosine deaminase [Streptococcus infantis ATCC
           700779]
          Length = 166

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ +   + L      + C+IVKDG VIGRG  A         HAE+ A+E A
Sbjct: 20  EAFMREALKEAE--IALEHDEIPIGCVIVKDGKVIGRGHNAREELQRAVMHAEIMAIENA 77

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I  V+    +     +G     
Sbjct: 78  NLSEESWRLLDCTLFVTIEPC------VMCSGAIGLARIPNVIYGAKNQKFGAAGSLYDI 131

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   ++E+E    +  + 
Sbjct: 132 LTDERLNHRVDVETGVLENECAEIMQDFF 160


>gi|300704191|ref|YP_003745793.1| tRNA-specific adenosine deaminase [Ralstonia solanacearum CFBP2957]
 gi|299071854|emb|CBJ43182.1| tRNA-specific adenosine deaminase [Ralstonia solanacearum CFBP2957]
          Length = 183

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 17/130 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56
           M     D  +M  AL  +R   G       V  ++V+   ++G G  A  G      HAE
Sbjct: 13  MSAHERDGYWMQQALVQARLAWG--EGEVPVGAVVVRGNEIVGVGYNAPIGTHDPSAHAE 70

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           ++AL +A              +VTLEPC        CA  ++   + RVV    DP    
Sbjct: 71  MRALRQAAVTLGNYRLPECEVFVTLEPC------VMCAGAMLHARVARVVYGAPDPKTGA 124

Query: 112 SGRGLQWLSQ 121
           +G  L   ++
Sbjct: 125 AGSVLDLFAE 134


>gi|260773318|ref|ZP_05882234.1| tRNA-specific adenosine-34 deaminase [Vibrio metschnikovii CIP
           69.14]
 gi|260612457|gb|EEX37660.1| tRNA-specific adenosine-34 deaminase [Vibrio metschnikovii CIP
           69.14]
          Length = 165

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 20/150 (13%)

Query: 30  SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
            V  ++VKDG VI  G     G      HAE+Q L +AG+  +       T YVTLEPC 
Sbjct: 18  PVGAVLVKDGQVIAEGWNRSIGGHDATAHAEIQVLRQAGQALQNYRLLDTTLYVTLEPC- 76

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS-----QKGIIVDRMMESEGK 135
                P CA  ++   + R+V    D     +G  L   +        +I   ++E + +
Sbjct: 77  -----PMCAGALLHSRVARIVYGAPDLKAGAAGTVLNLFASQAAYHYAVIEKGLLEEQCR 131

Query: 136 IFLHAYLTRQVEKRSHITLKIAVSQDNMIG 165
             L A+  R+ ++      +    Q+    
Sbjct: 132 TQLQAFFKRRRQEIKAQKEQQKQRQNKNSD 161


>gi|170077123|ref|YP_001733761.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Synechococcus sp. PCC 7002]
 gi|169884792|gb|ACA98505.1| RibD C-terminal domain [Synechococcus sp. PCC 7002]
          Length = 224

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 77/226 (34%), Gaps = 16/226 (7%)

Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA-- 202
              +R  +T   A+S D  I               K  +  L AQ DA++ G  T+ A  
Sbjct: 1   MHRQRPLVTAIAAMSADGKIADYSGAPARFPSAQDKAHLERLIAQMDAVMFGANTLRAYG 60

Query: 203 ------DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
                 D   L  R +  Q   P+  +      L  D    +  L   ++   E    + 
Sbjct: 61  TSLPIGDRHLLQQRQDRHQPPQPIHFVCSGSGNLPQDLPFFRQPLRRGLLTAPEQ---LP 117

Query: 257 ALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
             A       II  D     +  LT L  RG+  L + GG  +  SF     +D + L  
Sbjct: 118 RWAEFPGFEQIIALDSAGAWQPTLTELRQRGIEKLGLLGGGNLIASFAEQGCLDELWLTV 177

Query: 316 SQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCLEYIGK 357
             +++G    P+P+      +        +  +   S++ L Y  K
Sbjct: 178 CPVLLGGTAAPTPMAGNGFLQTAGLTLELLEYEAIASELFLHYRMK 223


>gi|255534103|ref|YP_003094475.1| zinc-binding CMP/dCMP deaminase [Pedobacter heparinus DSM 2366]
 gi|255347087|gb|ACU06413.1| CMP/dCMP deaminase zinc-binding [Pedobacter heparinus DSM 2366]
          Length = 157

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 17/148 (11%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
           ++ D  FM  AL+ ++    L      +  ++V  G ++GRG            HAE+QA
Sbjct: 13  AAEDEHFMRLALQEAQKAYDL--KEIPIGAIVVCKGKIVGRGHNLTEQLNDVTAHAEMQA 70

Query: 60  LEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
              A     G+  +  T YVT+EPC     +    Q      I ++V    +P    + +
Sbjct: 71  FTAASQTLGGKYLKDCTLYVTIEPCVMCAGASYWTQ------IGKLVYGAPEPKRGFTTK 124

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYL 142
             Q L  K ++   ++  E    +  + 
Sbjct: 125 SNQLLHPKTVLKSGVLAQECGALMTKFF 152


>gi|261401120|ref|ZP_05987245.1| tRNA-specific adenosine deaminase [Neisseria lactamica ATCC 23970]
 gi|269208892|gb|EEZ75347.1| tRNA-specific adenosine deaminase [Neisseria lactamica ATCC 23970]
          Length = 239

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 62/150 (41%), Gaps = 22/150 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
           A FM  AL  ++    L    P V  +IV DG +I               HAE+ AL +A
Sbjct: 93  AHFMGLALEQAKLSA-LMGEIP-VGAVIVSDGKIIASAHNTCIADCNVSRHAEINALAQA 150

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G E +     G   Y+TLEPC+       CA  +I+  IRRV+    +P    +G  +  
Sbjct: 151 GSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGAAEPKTGAAGSIVNL 204

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYLT 143
                L+    I   +++ E +  L  +  
Sbjct: 205 FADKRLNTHTAIRGGILQEECRAVLSRFFQ 234


>gi|207743199|ref|YP_002259591.1| cytosine/adenosine deaminase protein [Ralstonia solanacearum
           IPO1609]
 gi|206594596|emb|CAQ61523.1| cytosine/adenosine deaminase protein [Ralstonia solanacearum
           IPO1609]
          Length = 178

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 17/130 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56
           M     D  +M  AL  +R   G       V  ++V+   ++G G  A  G      HAE
Sbjct: 8   MSAHERDGYWMQQALVQARLAWG--EGEVPVGAVVVRGNEIVGVGYNAPIGTHDPSAHAE 65

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           ++AL +A              +VTLEPC        CA  ++   + RVV    DP    
Sbjct: 66  MRALRQAAVTLGNYRLPECEVFVTLEPC------VMCAGAMLHARVARVVYGAPDPKTGA 119

Query: 112 SGRGLQWLSQ 121
           +G  L   ++
Sbjct: 120 AGSVLDLFAE 129


>gi|150387879|ref|YP_001317928.1| CMP/dCMP deaminase, zinc-binding [Alkaliphilus metalliredigens
           QYMF]
 gi|149947741|gb|ABR46269.1| CMP/dCMP deaminase, zinc-binding [Alkaliphilus metalliredigens
           QYMF]
          Length = 151

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 22/151 (14%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
            +A +MS AL  ++    L      +  +I+++  VI               HAE+ A++
Sbjct: 1   MEAYYMSLALEEAKKAYEL--GEVPIGAIILRENKVIAAAHNLRESHHDATAHAEIIAIQ 58

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A     G     +T +VT+EPC      P CA  I++  I RVV+   DP     G  +
Sbjct: 59  AACRRLGGWRLTNSTLFVTIEPC------PMCAGAILQSRIDRVVIGAMDPKAGACGSII 112

Query: 117 QWL-----SQKGIIVDRMMESEGKIFLHAYL 142
             L     + +  IV  ++E E    +  + 
Sbjct: 113 NLLNNNQFNHQTEIVTGVLEDECSQIMKDFF 143


>gi|207723447|ref|YP_002253846.1| cytosine/adenosine deaminase protein [Ralstonia solanacearum MolK2]
 gi|206588648|emb|CAQ35611.1| cytosine/adenosine deaminase protein [Ralstonia solanacearum MolK2]
          Length = 194

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 17/130 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56
           M     D  +M  AL  +R   G       V  ++V+   ++G G  A  G      HAE
Sbjct: 24  MSAHERDGYWMQQALVQARLAWG--EGEVPVGAVVVRGNEIVGVGYNAPIGTHDPSAHAE 81

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           ++AL +A              +VTLEPC        CA  ++   + RVV    DP    
Sbjct: 82  MRALRQAAVTLGNYRLPECEVFVTLEPC------VMCAGAMLHARVARVVYGAPDPKTGA 135

Query: 112 SGRGLQWLSQ 121
           +G  L   ++
Sbjct: 136 AGSVLDLFAE 145


>gi|294795071|ref|ZP_06760206.1| LOW QUALITY PROTEIN: cytidine/deoxycytidylate deaminase family
           protein [Veillonella sp. 3_1_44]
 gi|294454433|gb|EFG22807.1| LOW QUALITY PROTEIN: cytidine/deoxycytidylate deaminase family
           protein [Veillonella sp. 3_1_44]
          Length = 164

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 56/156 (35%), Gaps = 22/156 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           M   S D  FM  AL  +     L      +  ++V++  +I R             HAE
Sbjct: 13  MDERSRDEYFMGFALEEAHKAYAL--GEIPIGAILVQNNTIISRHHNRRELDHDATAHAE 70

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           V  + EA +  +     G T YVT+EPC      P CA  II   I RVV    D     
Sbjct: 71  VLVIREACDVLKRWRLTGCTLYVTIEPC------PMCAGAIINSRIDRVVYGASDYKGGA 124

Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
                  LS  G+     +   ++  E    +  + 
Sbjct: 125 VESLFNVLSHPGLNHEPELASGVLGDECSQIMKDFF 160


>gi|313885505|ref|ZP_07819255.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619235|gb|EFR30674.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Eremococcus coleocola ACS-139-V-Col8]
          Length = 175

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEA 63
             +M  AL+ +     L      +  ++V  G ++GRG            HAE+ A+E A
Sbjct: 16  ETWMQEALKEADKA--LVLDEVPIGAVLVYQGQIVGRGHNVRESQERALGHAELMAIETA 73

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            +         A+ YVTLEPC      P CA  ++ C I+ V+    D     +G  +  
Sbjct: 74  NQQLGHWRLEEASLYVTLEPC------PMCAGALMNCRIKEVIYGASDLKAGCAGTLMNL 127

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYL 142
           L       +  ++  ++E E    L  + 
Sbjct: 128 LEEDRFNHRAQVIQGVLEQECSHKLSQFF 156


>gi|145594102|ref|YP_001158399.1| hypothetical protein Strop_1555 [Salinispora tropica CNB-440]
 gi|145303439|gb|ABP54021.1| bifunctional deaminase-reductase domain protein [Salinispora
           tropica CNB-440]
          Length = 248

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 71/201 (35%), Gaps = 16/201 (7%)

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
                 R  + +    S D  + +    +  ++G   K    LLR   D ++V  GT+  
Sbjct: 27  CYGRADRPRLRVNFVTSVDGAVTVDDYSA-GLSGEPDKRVFRLLRMLCDGLVVAGGTMRH 85

Query: 203 DD---PELTCRLNGLQEHS-----PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
           +      L  R    +        P  +++     L         A + P+++       
Sbjct: 86  ERYRALRLDERRRSWRREHGLPECPTLVVVSGSVNLDPTQPAFADAPVRPIVLTHAAATA 145

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
              LA     +     D  DL   L  L  RG+  LL EGG  +  +   + LVD + L 
Sbjct: 146 PPGLADVADLVEC-GDDRVDLAAGLAELRRRGLGQLLCEGGPHLFGALTAADLVDEVCLT 204

Query: 315 RSQIVIGEG------GIPSPL 329
            + ++ G G      G PSP+
Sbjct: 205 VAPLLAGPGAGRITAGQPSPV 225


>gi|77407016|ref|ZP_00784028.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           agalactiae H36B]
 gi|77174376|gb|EAO77233.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           agalactiae H36B]
          Length = 168

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 22/151 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ ++    L      + C+IVKDG +IGRG  A         HAE+ A+  A
Sbjct: 10  EWFMXEALKEAKSS--LEKEEIPIGCVIVKDGHIIGRGHNAREEFNKAILHAEIMAINNA 67

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            E+         T +VT+EPC        C+  I    I  V+    +     +G     
Sbjct: 68  NEKVGNWRLLDTTLFVTVEPC------VMCSGAIGLARIPHVIYGAKNTKFGAAGSLYDI 121

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYLTR 144
                L+ +  +   ++E +    +  +  +
Sbjct: 122 LSDSRLNHRVEVETGILEDQCAKIMQDFFRK 152


>gi|306828458|ref|ZP_07461653.1| tRNA-specific adenosine deaminase [Streptococcus mitis ATCC 6249]
 gi|304429257|gb|EFM32342.1| tRNA-specific adenosine deaminase [Streptococcus mitis ATCC 6249]
          Length = 155

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 57/149 (38%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  ALR +   + L      + C+IVKDG +I RG  A         HAE+ A+E A
Sbjct: 9   ESFMREALREAE--IALEHDEIPIGCVIVKDGEIISRGHNAREELQRAVMHAEIMAIENA 66

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I +VV    +     +G     
Sbjct: 67  NLSEESWRLLDCTLFVTIEPC------VMCSGAIGLARIPKVVYGAKNQKFGAAGSLYDI 120

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   ++E E    +  + 
Sbjct: 121 LTDERLNHRVEVETGILEDECAGIMQDFF 149


>gi|148985360|ref|ZP_01818565.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|148986205|ref|ZP_01819157.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           pneumoniae SP3-BS71]
 gi|148995215|ref|ZP_01824050.1| deoxyuridine 5'-triphosphate nucleotidohydrolase [Streptococcus
           pneumoniae SP9-BS68]
 gi|149004172|ref|ZP_01828969.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           pneumoniae SP14-BS69]
 gi|149023458|ref|ZP_01836047.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|168483689|ref|ZP_02708641.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
           CDC1873-00]
 gi|168486729|ref|ZP_02711237.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
           CDC1087-00]
 gi|169833520|ref|YP_001693493.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
           Hungary19A-6]
 gi|221230966|ref|YP_002510118.1| deaminase [Streptococcus pneumoniae ATCC 700669]
 gi|225853633|ref|YP_002735145.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae JJA]
 gi|225857883|ref|YP_002739393.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae 70585]
 gi|237650015|ref|ZP_04524267.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae CCRI
           1974]
 gi|237822610|ref|ZP_04598455.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae CCRI
           1974M2]
 gi|147757834|gb|EDK64845.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           pneumoniae SP14-BS69]
 gi|147921819|gb|EDK72947.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           pneumoniae SP3-BS71]
 gi|147922318|gb|EDK73438.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|147926817|gb|EDK77872.1| deoxyuridine 5'-triphosphate nucleotidohydrolase [Streptococcus
           pneumoniae SP9-BS68]
 gi|147929781|gb|EDK80771.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|168996022|gb|ACA36634.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
           Hungary19A-6]
 gi|172043028|gb|EDT51074.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
           CDC1873-00]
 gi|183570307|gb|EDT90835.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
           CDC1087-00]
 gi|220673426|emb|CAR67886.1| putative deaminase [Streptococcus pneumoniae ATCC 700669]
 gi|225721389|gb|ACO17243.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae 70585]
 gi|225723035|gb|ACO18888.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae JJA]
 gi|301793341|emb|CBW35702.1| putative deaminase [Streptococcus pneumoniae INV104]
 gi|301799211|emb|CBW31724.1| putative deaminase [Streptococcus pneumoniae OXC141]
 gi|332075677|gb|EGI86144.1| cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Streptococcus pneumoniae GA17570]
 gi|332204048|gb|EGJ18113.1| cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Streptococcus pneumoniae GA47901]
 gi|332205041|gb|EGJ19104.1| cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Streptococcus pneumoniae GA47368]
          Length = 155

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 58/149 (38%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  ALR +   + L      + C+IVKDG +IGRG  A         HAE+ A+E+A
Sbjct: 9   EVFMREALREAE--IALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIEDA 66

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I  VV    +     +G     
Sbjct: 67  NLSEESWRLLDCTLFVTIEPC------VMCSGAIGLARIPNVVYGAKNQKFGAAGSLYDI 120

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   ++E E    +  + 
Sbjct: 121 LTDERLNHRVEVEIGILEDECAAIMQDFF 149


>gi|87310742|ref|ZP_01092869.1| cytosine deaminase [Blastopirellula marina DSM 3645]
 gi|87286499|gb|EAQ78406.1| cytosine deaminase [Blastopirellula marina DSM 3645]
          Length = 166

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 45/126 (35%), Gaps = 17/126 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
           SF   FM  AL  +            V  +IV +  VI               HAE+ A+
Sbjct: 14  SFHQIFMYQALELAEQAA--REKEVPVGAIIVHNNRVIAAAHNQRETLHDPTAHAEMIAI 71

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A E  +       T YVTLEPC      P CA  I++  I  VV    DP        
Sbjct: 72  TQAAESLQNWRLADCTLYVTLEPC------PMCAGAILQARIPTVVFGAIDPKAGAVTSL 125

Query: 116 LQWLSQ 121
              LS 
Sbjct: 126 YTLLSD 131


>gi|260598940|ref|YP_003211511.1| tRNA-specific adenosine deaminase [Cronobacter turicensis z3032]
 gi|260218117|emb|CBA32906.1| tRNA-specific adenosine deaminase [Cronobacter turicensis z3032]
          Length = 196

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 55/149 (36%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL + 
Sbjct: 32  EYWMRHALTLAQRAW--DEGEVPVGAVLVHNNQVIGEGWNRPIGRHDPTAHAEIMALRQG 89

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +       T YVTLEPC        CA  ++   I  +V    D      G  +  
Sbjct: 90  GLVLQNYRLLDTTLYVTLEPC------VMCAGAMVHGRIGTLVFGARDAKTGAVGSLMDI 143

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYL 142
               G+     +++ ++ +E    L A+ 
Sbjct: 144 TGHPGMNHQVQVIEGILATECSAMLSAFF 172


>gi|207724908|ref|YP_002255305.1| hypothetical protein RSMK03421 [Ralstonia solanacearum MolK2]
 gi|206590134|emb|CAQ37095.1| 3.5.4.25 protein [Ralstonia solanacearum MolK2]
          Length = 197

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 55/171 (32%), Gaps = 12/171 (7%)

Query: 196 GIGTVLADDPELTCRLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           G  T+ A +P LT R   L            P+++ +     L  ++   +      +++
Sbjct: 2   GAETIRAGNPRLTVREPPLIAQRIRRGLPPQPIKVTVTTTGNLDPNAHFFRQGAQEKIVL 61

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
                   L   +      I        + +  +L  RGV  L VEGG  V   F++  +
Sbjct: 62  CPSAIAADLQSCYAGLACVIGLDGPISARGIANVLQRRGVQHLFVEGGTRVLSMFVSEAV 121

Query: 308 VDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDVCLEY 354
            D   L  +   +G  G             L    +  R    G    ++Y
Sbjct: 122 FDRFRLAIAPCFVGRAGASRLQLWHDRMWDLSFRLVAARVRLLGGTTVVDY 172


>gi|325846128|ref|ZP_08169222.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481721|gb|EGC84756.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 185

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 17/122 (13%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALE 61
            D  +M  A+  ++           + C+IVK+G +I R             HAE+ A++
Sbjct: 2   DDYFYMKEAINEAKLARL--EEEVPIGCVIVKNGKIIARSHNYTYKGKSALKHAEILAID 59

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           +A +          T YVT+EPCS       CA  II   I R+V+ + D      G   
Sbjct: 60  KASKYVGDFRLEDCTMYVTMEPCSM------CAGAIINSRIDRLVIALADVKRGACGSNT 113

Query: 117 QW 118
             
Sbjct: 114 NI 115


>gi|92112967|ref|YP_572895.1| tRNA-adenosine deaminase [Chromohalobacter salexigens DSM 3043]
 gi|91796057|gb|ABE58196.1| tRNA-adenosine deaminase [Chromohalobacter salexigens DSM 3043]
          Length = 151

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 52/125 (41%), Gaps = 18/125 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA----YGGCPHAEVQALE 61
           D  +M  AL  +     L +    V  ++V +DG ++G G  A    +    HAEV+AL 
Sbjct: 4   DTFYMHRALDQAHRA--LEAGEVPVGAVVVARDGDIVGTGFNAPVSSHDPSAHAEVRALR 61

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           +A E        G T +VTLEPC        C   II   + RVV    +P   +     
Sbjct: 62  DAAERLGNYRLEGCTLFVTLEPCLM------CTGAIIHARVARVVYAAAEPRSGMVESRA 115

Query: 117 QWLSQ 121
              +Q
Sbjct: 116 NLFAQ 120


>gi|300691564|ref|YP_003752559.1| tRNA-specific adenosine deaminase [Ralstonia solanacearum PSI07]
 gi|299078624|emb|CBJ51281.1| tRNA-specific adenosine deaminase [Ralstonia solanacearum PSI07]
          Length = 169

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 17/130 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56
           M     D  +M  AL  +R   G       V  ++V+   ++G G  A  G      HAE
Sbjct: 1   MSAHERDGYWMQQALVQARLAWG--EGEVPVGAVVVRGNEIVGVGYNAPIGTHDPSAHAE 58

Query: 57  VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           ++AL +A              +VTLEPC        CA  ++   + RVV    DP    
Sbjct: 59  MRALRQAAVRLGNYRLPECEVFVTLEPC------VMCAGAMLHARVARVVYGAPDPKTGA 112

Query: 112 SGRGLQWLSQ 121
           +G  L   ++
Sbjct: 113 AGSVLDLFAE 122


>gi|241760058|ref|ZP_04758156.1| cytidine and deoxycytidylate deaminase family protein [Neisseria
           flavescens SK114]
 gi|241319512|gb|EER55942.1| cytidine and deoxycytidylate deaminase family protein [Neisseria
           flavescens SK114]
          Length = 240

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 58/155 (37%), Gaps = 22/155 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P  S    FM  A+  +R    L      V  +IV  G  I        G      HAE+
Sbjct: 87  PSQSDMEAFMRLAIEQARQSAAL--GEVPVGAVIVYQGEAIAAAHNTCIGDHNVSHHAEI 144

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL  AG+            Y+TLEPCS       CA  +I+  + RV+    +P    +
Sbjct: 145 NALATAGKALQNYRLEDCDVYITLEPCSM------CASALIQARVGRVIYGAAEPKTGGA 198

Query: 113 GRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
           G  +       L++   I+  ++  E +  L  + 
Sbjct: 199 GSVVDLFADKRLNKHTAILGGILAEECQSVLQDFF 233


>gi|322376101|ref|ZP_08050611.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           sp. C300]
 gi|321279051|gb|EFX56094.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           sp. C300]
          Length = 155

 Score = 83.4 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 57/149 (38%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  ALR +   + L      + C+IVKDG +IGRG  A         HAE+ A+E A
Sbjct: 9   EAFMREALREAE--IALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIENA 66

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I  VV    +     +G     
Sbjct: 67  NVSEESWRLLDCTLFVTIEPC------VMCSGAIGLARIPNVVYGAKNQKFGAAGSLYDI 120

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   ++E +    +  + 
Sbjct: 121 LTDERLNHRVEVEAGILEDDCAAIMQDFF 149


>gi|213612302|ref|ZP_03370128.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 163

 Score = 83.4 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 59/154 (38%), Gaps = 22/154 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAG 64
            +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL + G
Sbjct: 1   YWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQGG 58

Query: 65  EEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
              +       T YVTLEPC        CA  ++   I RVV    D     +G  +  L
Sbjct: 59  LVLQNYRLLDTTLYVTLEPC------VMCAGAMVHSRIGRVVFGARDAKTGAAGSLIDVL 112

Query: 120 SQKGI-----IVDRMMESEGKIFLHAYLTRQVEK 148
              G+     I++ ++  E    L  +   + ++
Sbjct: 113 HHPGMNHRVEIIEGVLRDECATLLSDFFRMRRQE 146


>gi|261868753|ref|YP_003256675.1| tRNA-specific adenosine deaminase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261414085|gb|ACX83456.1| tRNA-specific adenosine deaminase [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 175

 Score = 83.4 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 65/176 (36%), Gaps = 23/176 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHAE 56
             +  D +FM  AL  +     L      V  ++V + G +IG G            HAE
Sbjct: 4   SQTQLDEKFMHHALMLAGKAEAL--GEIPVGAVLVSEAGEIIGEGWNLSIIHSDPTAHAE 61

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +  L + G++ +       T YVTLEPC        CA  I+   I+R+V    D     
Sbjct: 62  IVTLRQGGQKLQNYRLLNTTLYVTLEPC------TMCAGAILHSRIKRLVFGAADYKTGA 115

Query: 112 SGRGLQ-----WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            G          ++    I   +++ E    L A+  ++  ++    L    + + 
Sbjct: 116 VGSRFHFFDDYKMNHAIEITGGVLQQECSEKLSAFFQKRRAQQKEAKLARQATVEM 171


>gi|58581831|ref|YP_200847.1| hypothetical protein XOO2208 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84623733|ref|YP_451105.1| hypothetical protein XOO_2076 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188576614|ref|YP_001913543.1| tRNA-specific adenosine deaminase [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|58426425|gb|AAW75462.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84367673|dbj|BAE68831.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188521066|gb|ACD59011.1| tRNA-specific adenosine deaminase [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 170

 Score = 83.4 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 65/164 (39%), Gaps = 22/164 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAE 56
           P ++ D  +M  AL  +          P V  LIV  +G V+G G      ++    HAE
Sbjct: 11  PHAAIDVHWMQHALHLAECAERDHDEIP-VGALIVGAEGNVLGEGWNFNIASHDPSAHAE 69

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ +AG         G T YVTLEPC+       CA  +I   I RVV    DP    
Sbjct: 70  IVAMRDAGRRLSNHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGA 123

Query: 112 SGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
            G     L+      +  +   ++ +E  + L  Y   +  K  
Sbjct: 124 CGSVFDLLADPRHNHRVRVCGGVLAAEASLRLTNYFRAKRGKPP 167


>gi|22536583|ref|NP_687434.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           agalactiae 2603V/R]
 gi|25010509|ref|NP_734904.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           agalactiae NEM316]
 gi|76788440|ref|YP_329120.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           agalactiae A909]
 gi|77408782|ref|ZP_00785512.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           agalactiae COH1]
 gi|77412323|ref|ZP_00788636.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           agalactiae CJB111]
 gi|77413967|ref|ZP_00790141.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           agalactiae 515]
 gi|22533418|gb|AAM99306.1|AE014209_19 cytidine/deoxycytidylate deaminase family protein [Streptococcus
           agalactiae 2603V/R]
 gi|23094862|emb|CAD46080.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563497|gb|ABA46081.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           agalactiae A909]
 gi|77160003|gb|EAO71140.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           agalactiae 515]
 gi|77161612|gb|EAO72610.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           agalactiae CJB111]
 gi|77172627|gb|EAO75766.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           agalactiae COH1]
 gi|319744400|gb|EFV96759.1| cytidine/deoxycytidylate deaminase [Streptococcus agalactiae ATCC
           13813]
          Length = 168

 Score = 83.4 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 60/151 (39%), Gaps = 22/151 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM+ AL+ ++    L      + C+IVKDG +IGRG  A         HAE+ A+  A
Sbjct: 10  EWFMTEALKEAKSS--LEKEEIPIGCVIVKDGHIIGRGHNAREEFNKAILHAEIMAINNA 67

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            E+         T +VT+EPC        C+  I    I  V+    +     +G     
Sbjct: 68  NEKVGNWRLLDTTLFVTVEPC------VMCSGAIGLARIPHVIYGAKNTKFGAAGSLYDI 121

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYLTR 144
                L+ +  +   ++E +    +  +  +
Sbjct: 122 LSDSRLNHRVEVETGILEDQCAKIMQDFFRK 152


>gi|229492434|ref|ZP_04386238.1| riboflavin biosynthesis protein RibD domain protein [Rhodococcus
           erythropolis SK121]
 gi|229320663|gb|EEN86480.1| riboflavin biosynthesis protein RibD domain protein [Rhodococcus
           erythropolis SK121]
          Length = 249

 Score = 83.4 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 78/220 (35%), Gaps = 16/220 (7%)

Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIG 198
           H       +    + + +  S D      G    PI+       +  LRA  D +LVG G
Sbjct: 17  HTVHDFYADAPEGVRVNMVASLDG-AAAFGGRVRPISNTADHQLLRSLRAYCDVLLVGAG 75

Query: 199 TVLADD--PELT-------CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
           T+ A+   P +         R  G Q   P   ++     L  +S +  T    P+I+ +
Sbjct: 76  TIRAERYGPAMLDAELRRYRRDEGRQAALPSVAVVTHSGNLPWNSPLF-TGGSRPIIVTS 134

Query: 250 ENDDPVLALAFRKKNINIIYCDC-RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
                      + +   ++  D   D   ++  L  RG+  +L EGG A+  + +   LV
Sbjct: 135 ALGATRCQPDVQCRADIMVAGDVDVDPIAMIQGLRDRGLKRVLCEGGPALLSTLVAHDLV 194

Query: 309 DSIILYRSQIVIG----EGGIPSPLEEGYLEKNFMCVRRD 344
           D +    S I+ G     G + +P            V  +
Sbjct: 195 DDMCFTLSPILAGPQPASGLVSAPALAVPQTLRLRHVLLE 234


>gi|17230776|ref|NP_487324.1| cytosine deaminase [Nostoc sp. PCC 7120]
 gi|17132379|dbj|BAB74983.1| cytosine deaminase [Nostoc sp. PCC 7120]
          Length = 143

 Score = 83.4 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 19/150 (12%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
            D  FM AA++ ++           +  ++VKDG ++GRG            HAE+  L 
Sbjct: 1   MDE-FMQAAIQEAKQGRQEGG--IPIGSVLVKDGKILGRGHNKRVQDRDPVTHAEIDCLR 57

Query: 62  EAG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
            AG     RG T Y TL PC        CA  +++ GI++V+V               ++
Sbjct: 58  NAGRIGSYRGTTLYSTLMPCY------LCAGAVVQFGIKKVIVGESRTFPGAK----DFM 107

Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
              G+ V  +   E +  +  ++    E  
Sbjct: 108 VSHGVEVIDLNLDECEQMMSEFVQTNPELW 137


>gi|162446945|ref|YP_001620077.1| Zn dependent nucleoside deaminase [Acholeplasma laidlawii PG-8A]
 gi|161985052|gb|ABX80701.1| probable Zn dependent nucleoside deaminase [Acholeplasma laidlawii
           PG-8A]
          Length = 146

 Score = 83.4 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 17/121 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEA 63
             FM+ AL+ ++           V  ++V DG +I R             HAE  A+E+A
Sbjct: 7   EYFMNEALKEAKKA--NDKDEVPVGAVVVLDGKIIARAHNLRESRQSIHAHAEFLAIEKA 64

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            ++        A  YVTLEPC      P CA  +I+  I+ +     DP        ++ 
Sbjct: 65  AKKIGSWRLENADVYVTLEPC------PMCAGAMIQARIKNLYYGAKDPKTGAVESVIKL 118

Query: 119 L 119
           L
Sbjct: 119 L 119


>gi|157691308|ref|YP_001485770.1| nucleoside deaminase [Bacillus pumilus SAFR-032]
 gi|157680066|gb|ABV61210.1| possible nucleoside deaminase [Bacillus pumilus SAFR-032]
          Length = 158

 Score = 83.4 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
           + D +FM  A+  +     +      +  +IV D  ++ R      T      HAE+ A+
Sbjct: 2   TRDEQFMQEAISEALKAEQI--GEVPIGAIIVVDDQIVSRAHNLRETEQRSIAHAELLAI 59

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA +         A  YVTLEPC      P CA  I+   +++VV    DP    +G  
Sbjct: 60  DEACKTTESWRLEDAVLYVTLEPC------PMCAGAIVLSRVKKVVFGAYDPKGGCAGTL 113

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +  L     + +  ++  ++E+E    L  + 
Sbjct: 114 MNLLDDERFNHQSEVIGGVLENECGELLSQFF 145


>gi|194018067|ref|ZP_03056672.1| tRNA-specific adenosine deaminase [Bacillus pumilus ATCC 7061]
 gi|194010259|gb|EDW19836.1| tRNA-specific adenosine deaminase [Bacillus pumilus ATCC 7061]
          Length = 158

 Score = 83.4 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
           + D +FM  A+  +     +      +  +IV D  ++ R      T      HAE+ A+
Sbjct: 2   TRDEQFMQEAISEALKAEQI--GEVPIGAIIVVDDQIVSRAHNLRETEQRSIAHAELLAI 59

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA +         A  YVTLEPC      P CA  I+   +++VV    DP    +G  
Sbjct: 60  DEACKTTGSWRLEDAVLYVTLEPC------PMCAGAIVLSRVKKVVFGAYDPKGGCAGTL 113

Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +  L     + +  ++  ++E+E    L  + 
Sbjct: 114 MNLLDDERFNHQSEVIGGVLENECGELLSQFF 145


>gi|118580679|ref|YP_901929.1| CMP/dCMP deaminase [Pelobacter propionicus DSM 2379]
 gi|118503389|gb|ABK99871.1| tRNA-adenosine deaminase [Pelobacter propionicus DSM 2379]
          Length = 181

 Score = 83.4 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 45/120 (37%), Gaps = 17/120 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             +M  A+  +      +     + C+IV+D  +I RG            HAE+ A+ +A
Sbjct: 16  EYWMQRAIAEA--GKARSRDEVPIGCVIVRDNRIIARGHNLRESSQDPSAHAEMIAIRKA 73

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
             +         T YVTLEPC        C   II   I RVV    DP    +G     
Sbjct: 74  ARKLSSWRLLDTTLYVTLEPC------TMCMGAIILSRIPRVVFGCLDPKGGAAGSLYDL 127


>gi|167742541|ref|ZP_02415315.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
          14]
 gi|167821693|ref|ZP_02453373.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
          91]
          Length = 60

 Score = 83.4 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 27/57 (47%)

Query: 3  VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           S  D   M+ ALR +   +  T  NP V C+I +    +G G     G PHAEV A
Sbjct: 4  FSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHA 60


>gi|109900168|ref|YP_663423.1| cytosine deaminase [Pseudoalteromonas atlantica T6c]
 gi|109702449|gb|ABG42369.1| Cytosine deaminase [Pseudoalteromonas atlantica T6c]
          Length = 145

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 20/141 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQALEEAG 64
           +FM AA+  ++  +GL      +  ++V +  +IGRG       G P  H E+ ALE AG
Sbjct: 3   KFMQAAIDEAK--LGLAEGGIPIGSVLVHNNKIIGRGHNKRVQSGSPILHGEMDALENAG 60

Query: 65  EEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +     + +T Y TL PCS    +      I+  GI +VV+  +   +         L+
Sbjct: 61  RQPARVYKESTLYTTLSPCSMCSGT------ILLYGIPKVVIGENQTFMGEES----LLT 110

Query: 121 QKGIIVDRMMESEGKIFLHAY 141
            +G+    +   E    ++ +
Sbjct: 111 SRGVNTQVLHNQECISLMNDF 131


>gi|322386624|ref|ZP_08060249.1| tRNA-specific adenosine deaminase [Streptococcus cristatus ATCC
           51100]
 gi|321269297|gb|EFX52232.1| tRNA-specific adenosine deaminase [Streptococcus cristatus ATCC
           51100]
          Length = 166

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ +   + L +    + C++VK+G +IGRG  A         HAE+ A+EEA
Sbjct: 20  EMFMREALKEAE--IALANDEIPIGCVLVKNGQIIGRGHNAREELQRAVMHAEIMAIEEA 77

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            +          T +VT+EPC        C+  I    I +V+    +      G     
Sbjct: 78  NQHENSWRLLDTTLFVTIEPC------VMCSGAIGLARIPKVIYGAKNQKFGAGGSLYDI 131

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYL 142
           L+   +     +   ++E E    +  + 
Sbjct: 132 LTDARLNHRVEVESGLLEEECAAIMQNFF 160


>gi|77361256|ref|YP_340831.1| tRNA-specific adenosine deaminase [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876167|emb|CAI87389.1| tRNA-specific adenosine deaminase [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 168

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 65/173 (37%), Gaps = 22/173 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M     D  +M  AL +++    L      V  ++VKD  ++  G     T      HAE
Sbjct: 1   MNEPFDDNYWMQQALTYAKQAEQLDE--IPVGAILVKDNQLVAAGYNRSITDNDPSAHAE 58

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ + G+          T YVTLEPCS       CA  ++   I+R+V    D     
Sbjct: 59  MMAVRKGGKALNNYRLIDCTLYVTLEPCSM------CAGLLVHSRIKRLVFGAADAKTGS 112

Query: 112 SGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
           +G  +  L       +  ++  ++E +    +  +  R+  +          S
Sbjct: 113 AGSIMNLLQEPKLNHQVEVLGGVLEGQCATIISGFFKRRRAQIKAAKKAARNS 165


>gi|222153804|ref|YP_002562981.1| deaminase [Streptococcus uberis 0140J]
 gi|222114617|emb|CAR43628.1| putative deaminase [Streptococcus uberis 0140J]
          Length = 167

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 61/162 (37%), Gaps = 23/162 (14%)

Query: 1   MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
           M  S  +   FM  AL+ ++    L      + C+IVK+G +IGRG  A         HA
Sbjct: 1   MSYSQEEKEFFMREALKEAKKS--LDKGEIPIGCVIVKEGRIIGRGHNAREERNQAIMHA 58

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+ EA            T +VT+EPC        C+  I    I +V+    +    
Sbjct: 59  EIMAINEANATVGNWRLLDTTLFVTIEPC------VMCSGAIGLARIPQVIFGAHNQKFG 112

Query: 111 VSGRGL-----QWLSQKGIIVDRMMESEGKIFLHAYLTRQVE 147
            +G        Q L+ +  +   ++  E    +  +      
Sbjct: 113 GAGSLYAILTDQRLNHRVELETGLLAEECAAIMQTFFRAGRM 154


>gi|269797481|ref|YP_003311381.1| CMP/dCMP deaminase zinc-binding protein [Veillonella parvula DSM
           2008]
 gi|269094110|gb|ACZ24101.1| CMP/dCMP deaminase zinc-binding protein [Veillonella parvula DSM
           2008]
          Length = 169

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 61/177 (34%), Gaps = 22/177 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           M   S D  FM  AL  +     L      +  ++V++  +I R             HAE
Sbjct: 1   MDERSRDEYFMGFALEEAHKAYAL--GEIPIGAILVQNNTIISRHHNRRELDHDATAHAE 58

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           V  + EA +  +     G T YVT+EPC      P CA  II   I RVV    D     
Sbjct: 59  VLVIREACDVLKRWRLTGCTLYVTIEPC------PMCAGAIINSRIDRVVYGASDYKGGA 112

Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163
                  LS  G+     +   ++  E    +  +   + + R         + +  
Sbjct: 113 VESLFNVLSHPGLNHEPELASGVLGDECSQIMKDFFKERRKTRRSTQEAEGSALEMR 169


>gi|55823732|ref|YP_142173.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           thermophilus CNRZ1066]
 gi|55739717|gb|AAV63358.1| cytidine/deoxycytidylate deaminase family protein, putative
           [Streptococcus thermophilus CNRZ1066]
          Length = 172

 Score = 83.0 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FMS AL+ ++  +        + C+IVKD  ++GRG  A         HAEV A++EA
Sbjct: 10  EIFMSEALKEAQKSLDKAE--IPIGCVIVKDREIVGRGHNAREELNQAIMHAEVMAIQEA 67

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I +V+    +     +G     
Sbjct: 68  NRTVGNWRLLDCTLFVTIEPC------VMCSGAIGLARIPKVIYGACNQKFGGAGSLYDI 121

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYL 142
           L       +  +   +ME +    +  + 
Sbjct: 122 LRDERLNHRVEVETGIMEVDCAKIMQDFF 150


>gi|186686613|ref|YP_001869809.1| CMP/dCMP deaminase, zinc-binding [Nostoc punctiforme PCC 73102]
 gi|186469065|gb|ACC84866.1| CMP/dCMP deaminase, zinc-binding [Nostoc punctiforme PCC 73102]
          Length = 143

 Score = 83.0 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 19/150 (12%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALE 61
            D  FM AA++ ++   G       +  ++VKDG ++GRG       G P  HAE+  L 
Sbjct: 1   MDE-FMEAAIQEAK--QGREEGGIPIGSVLVKDGKILGRGHNKRVQDGDPVTHAEIDCLR 57

Query: 62  EAG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
            AG     RG T Y TL PC        CA  +++ GI++V+V              +++
Sbjct: 58  NAGRVGSYRGTTLYSTLMPCY------LCAGAVVQFGIKKVIVGESQTFPGAK----EFM 107

Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
              G+ V  +   + +  +  ++    E  
Sbjct: 108 VSHGVEVIDLNLDDCEQMMSEFIETNPELW 137


>gi|332830410|gb|EGK03038.1| hypothetical protein HMPREF9455_01288 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 147

 Score = 83.0 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 56/151 (37%), Gaps = 17/151 (11%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M     D  +M  AL  ++  +        +  +IV    +I R      T      HAE
Sbjct: 1   MTEILTDEHYMRQALNEAQ--IAFEKKEVPIGAVIVCQNRIIARAHNLTETLNDVTAHAE 58

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +QA+  A     G+     T YVTLEPC      P CA  ++   I +VV    D     
Sbjct: 59  MQAITAAANFLGGKYLTNCTLYVTLEPC------PMCAGGLLWSQIPKVVFGAKDEKKGY 112

Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
           S      L  K  I+  ++E E    L  + 
Sbjct: 113 SLFSPNILHNKTSIISGILEEECAFLLKEFF 143


>gi|121998459|ref|YP_001003246.1| CMP/dCMP deaminase, zinc-binding [Halorhodospira halophila SL1]
 gi|121589864|gb|ABM62444.1| CMP/dCMP deaminase, zinc-binding protein [Halorhodospira halophila
           SL1]
          Length = 142

 Score = 83.0 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 52/122 (42%), Gaps = 17/122 (13%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEE 66
           M+ AL  +R+          V  ++V+DG+++G G            HAE+ AL  AG+ 
Sbjct: 1   MARALELARYAA--DQGEVPVGAVVVRDGVLLGEGRNQPIVSRDPTAHAEINALRAAGQA 58

Query: 67  A-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           A      GAT YVTLEPC        CA  +I   I R+V    DP     G     L  
Sbjct: 59  AGAYRLPGATLYVTLEPCFM------CAGALIHARIERLVYGAADPKTGACGGQFDLLGL 112

Query: 122 KG 123
            G
Sbjct: 113 PG 114


>gi|227549141|ref|ZP_03979190.1| bifunctional deaminase-reductase domain protein [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078782|gb|EEI16745.1| bifunctional deaminase-reductase domain protein [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 220

 Score = 83.0 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 66/190 (34%), Gaps = 18/190 (9%)

Query: 169 CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF 228
             S  +   +    +  LR  SD +LVG GTV A+D         +    P  ++     
Sbjct: 34  GTSGSLGNELDSQLLLALRDWSDCVLVGAGTVRAED--------YVPATLPFAVV-SRSL 84

Query: 229 KLSLDSKIIKTALLAPVIIVTENDD------PVLALAFRKKNINIIYCDCRDLKKLLTIL 282
            L  DS+  +     P +I+T           +      +    I+        +++  L
Sbjct: 85  SLDPDSRFFRG---TPPLILTPRASLGDASLTLTRSRLTQAGATIVDTGGGSPAEIIAAL 141

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
             RG + +  EGG ++  + + + L+D + L     V G      PLE          + 
Sbjct: 142 HARGFSRISCEGGPSLYAAMLAADLIDVMHLTVDPSVSGGDAHHLPLENSDCGTRRFTLE 201

Query: 343 RDYFGSDVCL 352
             +   D  L
Sbjct: 202 ATHVSPDSVL 211


>gi|255534275|ref|YP_003094646.1| tRNA-specific adenosine-34 deaminase [Flavobacteriaceae bacterium
           3519-10]
 gi|255340471|gb|ACU06584.1| tRNA-specific adenosine-34 deaminase [Flavobacteriaceae bacterium
           3519-10]
          Length = 143

 Score = 83.0 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 18/145 (12%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M  AL+ ++    L      + C+IV +  +I +             HAE+QA+  
Sbjct: 4   DEYYMKIALQEAQQA--LEKDEVPIGCIIVSNNRIIAKAHNLTEALNDVTAHAEMQAITS 61

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G+  +  T YVTLEPC        C   +    I +VV+   D       + L 
Sbjct: 62  AANYLGGKYLQNCTLYVTLEPC------VMCCGALSWSQISKVVIGARDEQRGFINKNLS 115

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYL 142
              +  I++  ++E+E    +  + 
Sbjct: 116 IHPKTEIVL-GVLENECSQLVKDFF 139


>gi|332670626|ref|YP_004453634.1| bifunctional deaminase-reductase domain-containing protein
           [Cellulomonas fimi ATCC 484]
 gi|332339664|gb|AEE46247.1| bifunctional deaminase-reductase domain protein [Cellulomonas fimi
           ATCC 484]
          Length = 274

 Score = 83.0 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 77/215 (35%), Gaps = 19/215 (8%)

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
            R  E+E        +     +  H+   +  S D     A   S  I          +L
Sbjct: 28  PRPDEAELLGLFTDRMPVDPPRGVHVRANMVSSLDGAATGADRRSGSINDPADHRVFRVL 87

Query: 187 RAQSDAILVGIGTVLADD------PELTCRLNGLQEHSPMR--IILDPHFKLSLDSKIIK 238
           RA +D +LVG GTV A+       P            SP     ++     L      + 
Sbjct: 88  RALADVVLVGGGTVRAEHYSALEVPAGLEEARRALGRSPEIELAVVTAGADLPGA---LL 144

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVE 293
                P++I T     +  +  R     +I  +       DL+  L  L  RG++ +L E
Sbjct: 145 DGPRPPIVITTSQSPGLDQVRDRVGPERVIVTESDTPGVVDLRVALAALGARGLSHVLAE 204

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
           GG ++    + + LVD +    S +++G    P+P
Sbjct: 205 GGPSLLGQLLEADLVDELCATSSPVLVGG---PAP 236


>gi|254252116|ref|ZP_04945434.1| Cytidine/deoxycytidylate deaminase [Burkholderia dolosa AUO158]
 gi|124894725|gb|EAY68605.1| Cytidine/deoxycytidylate deaminase [Burkholderia dolosa AUO158]
          Length = 206

 Score = 83.0 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 60/155 (38%), Gaps = 22/155 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEV 57
           PVS+ DA FM   L  +       +    V  ++V+   VI RG     G      HAE+
Sbjct: 39  PVSARDAHFMR--LAQAAAEEARAAGEVPVGAVLVRGDEVIARGFNHPIGGHDPSAHAEM 96

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL  A +  +     G   YVTLEPC        CA  I+   I RVV    DP     
Sbjct: 97  AALRMAAQRLQNYRMPGCELYVTLEPCLM------CAGAIMHARIARVVYGAPDPKTGAC 150

Query: 113 GRGLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
           G  +       L+    ++  ++  E    L ++ 
Sbjct: 151 GSVIDAFANTQLNHHAEVIGGVLADECGAALKSFF 185


>gi|125974987|ref|YP_001038897.1| tRNA-adenosine deaminase [Clostridium thermocellum ATCC 27405]
 gi|256003803|ref|ZP_05428790.1| CMP/dCMP deaminase zinc-binding [Clostridium thermocellum DSM 2360]
 gi|281418595|ref|ZP_06249614.1| CMP/dCMP deaminase zinc-binding [Clostridium thermocellum JW20]
 gi|125715212|gb|ABN53704.1| tRNA-adenosine deaminase [Clostridium thermocellum ATCC 27405]
 gi|255992141|gb|EEU02236.1| CMP/dCMP deaminase zinc-binding [Clostridium thermocellum DSM 2360]
 gi|281407679|gb|EFB37938.1| CMP/dCMP deaminase zinc-binding [Clostridium thermocellum JW20]
 gi|316939149|gb|ADU73183.1| CMP/dCMP deaminase zinc-binding protein [Clostridium thermocellum
           DSM 1313]
          Length = 161

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 22/147 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           FM  AL+ +    G   T   +  ++VKDG +I RG            HAE+  + EA  
Sbjct: 11  FMREALKEAYKAYGKNET--PIGAVMVKDGSIIARGHNQKELTNDPTNHAEMAVIREACA 68

Query: 66  E-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           +           YVTLEPC        CA  II+  + R+ +   DP    +G  +  L 
Sbjct: 69  KLGTWRLNDCDLYVTLEPC------TMCAGAIIQARVGRLFIGSLDPKAGAAGSVIDVLK 122

Query: 121 -----QKGIIVDRMMESEGKIFLHAYL 142
                 +  +   +++ E    L  + 
Sbjct: 123 VDAFNHRVEVTYGILQEECSEILKNFF 149


>gi|324992584|gb|EGC24505.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK405]
          Length = 156

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ +   + L      + C++VK+G +IGRG  A         HAE+ A+EEA
Sbjct: 10  EAFMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEA 67

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                     G T +VT+EPC        C+  I    I  VV    +     +G     
Sbjct: 68  NRHENSWRLLGTTLFVTIEPC------VMCSGAIGLARIPHVVYGAANQKFGAAGSLYDI 121

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   +++ E    +  + 
Sbjct: 122 LTDERLNHRVEVETGVLQEECAQIMQEFF 150


>gi|296270228|ref|YP_003652860.1| bifunctional deaminase-reductase domain-containing protein
           [Thermobispora bispora DSM 43833]
 gi|296093015|gb|ADG88967.1| bifunctional deaminase-reductase domain protein [Thermobispora
           bispora DSM 43833]
          Length = 240

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 57/150 (38%), Gaps = 11/150 (7%)

Query: 186 LRAQSDAILVGIGTVLAD-------DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           LR  +D ILVG GTV  +                G     P+ ++      L     +  
Sbjct: 59  LRGLADVILVGAGTVRTEGYGPARPRESWAGLRAGRPPAPPIAVV-SRTLDLDFGGPLFT 117

Query: 239 T-ALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGG 295
             A  A  I++T    P    A   +  +++    +  D+   + +L  RG+T +L EGG
Sbjct: 118 ECAPGARTIVITSAAAPADRRAAAAERADVLIAGEEMVDVAAAVRLLRERGLTRILCEGG 177

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             +      + L+D + L  S ++ G    
Sbjct: 178 PVLNAELAAAGLIDELALTISPMLTGGDAA 207


>gi|254513988|ref|ZP_05126049.1| tRNA-specific adenosine deaminase [gamma proteobacterium NOR5-3]
 gi|219676231|gb|EED32596.1| tRNA-specific adenosine deaminase [gamma proteobacterium NOR5-3]
          Length = 150

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 18/128 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQ 58
           +S+ D  FM  AL  ++     +     V  ++V+   ++G G  A         HAE+ 
Sbjct: 1   MSAHDL-FMLRALDLAQEAA--SRGEVPVGAVVVEGDRILGEGRNAQIASMDPTAHAEIN 57

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL  A    +     GAT YVTLEPCS       C   ++   I  VV    +P      
Sbjct: 58  ALRAASALVKNYRIPGATLYVTLEPCSM------CCGALVHARISTVVFAAREPRAGAVV 111

Query: 114 RGLQWLSQ 121
                L +
Sbjct: 112 STRSLLDE 119


>gi|191639204|ref|YP_001988370.1| Putative Cytidine/deoxycytidylate deaminase, zinc-binding region
           YaaJ [Lactobacillus casei BL23]
 gi|227533725|ref|ZP_03963774.1| zinc-binding cytidine/deoxycytidylate deaminase [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|190713506|emb|CAQ67512.1| Putative Cytidine/deoxycytidylate deaminase, zinc-binding region
           YaaJ [Lactobacillus casei BL23]
 gi|227188709|gb|EEI68776.1| zinc-binding cytidine/deoxycytidylate deaminase [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|327383282|gb|AEA54758.1| Nucleoside deaminase [Lactobacillus casei LC2W]
 gi|327386465|gb|AEA57939.1| Nucleoside deaminase [Lactobacillus casei BD-II]
          Length = 168

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 17/122 (13%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
           +FM AAL  ++    +      +  +IV  G +IGRG     T      HAE+ A++ A 
Sbjct: 8   QFMDAALTEAKKAAAI--GEVPIGAVIVHQGEIIGRGYNLRETTQDATHHAEMLAIQAAC 65

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           +          + +VTLEPC      P CA  +I   +        DP   V+G     L
Sbjct: 66  KTLGTWRLEDCSLFVTLEPC------PMCAGAMINARVATCYFGATDPKAGVAGTFYNLL 119

Query: 120 SQ 121
           + 
Sbjct: 120 AD 121


>gi|114798109|ref|YP_758764.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Hyphomonas neptunium ATCC 15444]
 gi|114738283|gb|ABI76408.1| riboflavin biosynthesis protein RibD N-terminal domain protein
           [Hyphomonas neptunium ATCC 15444]
          Length = 152

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 55/118 (46%), Positives = 71/118 (60%), Gaps = 3/118 (2%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATA 72
           A + +R + GLT  NPSV CLI+   G + G GVT  GG PHAE  AL+EA  +A G TA
Sbjct: 16  AFQLARLNHGLTGKNPSVGCLILDARGHIAGAGVTGTGGAPHAEEVALDEAAGKAAGGTA 75

Query: 73  YVTLEPCSHYGRS-PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           YVTLEPC       P CA+ ++E GI RVVV ++DP    +  GL  L + G+ V+  
Sbjct: 76  YVTLEPCRERSSGAPSCARKLVEAGIARVVVAIEDPHP-TARDGLAILREAGVRVETG 132


>gi|317476774|ref|ZP_07936017.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides eggerthii 1_2_48FAA]
 gi|316906949|gb|EFV28660.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides eggerthii 1_2_48FAA]
          Length = 187

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 46/121 (38%), Gaps = 25/121 (20%)

Query: 3   VSSFDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
            S  DAR+M  A+  S        G          +IV+DG VI  GV           H
Sbjct: 31  FSDEDARYMRMAIDLSVENIDNGGG------PFGAVIVRDGEVIATGVNRVVPNNDPTAH 84

Query: 55  AEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AEV A+  A ++       G T Y + EPC      P C   +   G++R+       D 
Sbjct: 85  AEVNAIRNACQKLDTFQLEGCTVYSSCEPC------PMCLSALYWAGVKRICYGNTKADA 138

Query: 110 R 110
           +
Sbjct: 139 K 139


>gi|218130011|ref|ZP_03458815.1| hypothetical protein BACEGG_01594 [Bacteroides eggerthii DSM 20697]
 gi|217987814|gb|EEC54140.1| hypothetical protein BACEGG_01594 [Bacteroides eggerthii DSM 20697]
          Length = 207

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 46/121 (38%), Gaps = 25/121 (20%)

Query: 3   VSSFDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
            S  DAR+M  A+  S        G          +IV+DG VI  GV           H
Sbjct: 51  FSDEDARYMRMAIDLSVENIDNGGG------PFGAVIVRDGEVIATGVNRVVPNNDPTAH 104

Query: 55  AEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AEV A+  A ++       G T Y + EPC      P C   +   G++R+       D 
Sbjct: 105 AEVNAIRNACQKLDTFQLEGCTVYSSCEPC------PMCLSALYWAGVKRICYGNTKADA 158

Query: 110 R 110
           +
Sbjct: 159 K 159


>gi|225076485|ref|ZP_03719684.1| hypothetical protein NEIFLAOT_01531 [Neisseria flavescens
           NRL30031/H210]
 gi|224952164|gb|EEG33373.1| hypothetical protein NEIFLAOT_01531 [Neisseria flavescens
           NRL30031/H210]
          Length = 240

 Score = 82.6 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 48/130 (36%), Gaps = 17/130 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P  S    FM  A+  +R     T     V  +IV  G  I        G      HAE+
Sbjct: 87  PSQSDMEAFMRLAIEQARQSA--TLGEVPVGAVIVYQGKAIAAAHNTCIGDHNVSHHAEI 144

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL  AG+            Y+TLEPCS       CA  +I+  + RV+    +     +
Sbjct: 145 NALAAAGKALQNYRLEDCDVYITLEPCSM------CASALIQARVGRVIYGAAEAKTGAA 198

Query: 113 GRGLQWLSQK 122
           G  +   + K
Sbjct: 199 GSVVDLFADK 208


>gi|325130078|gb|EGC52865.1| tRNA-specific adenosine deaminase [Neisseria meningitidis
           OX99.30304]
 gi|325138115|gb|EGC60688.1| tRNA-specific adenosine deaminase [Neisseria meningitidis ES14902]
 gi|325142208|gb|EGC64629.1| tRNA-specific adenosine deaminase [Neisseria meningitidis 961-5945]
          Length = 163

 Score = 82.6 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 62/150 (41%), Gaps = 22/150 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
           A FM  AL  ++    L    P V  +IV DG +I               HAE+ AL +A
Sbjct: 17  AHFMGLALEQAKLSA-LMGEIP-VGAVIVSDGKIIASAHNTCIADCNVSRHAEINALAQA 74

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G E +     G   Y+TLEPC+       CA  +I+  IRRV+    +P    +G  +  
Sbjct: 75  GSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGAAEPKTGAAGSIVNL 128

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYLT 143
                L+    I   +++ E +  L  +  
Sbjct: 129 FADKRLNTHTAIRGGILQEECRAVLSRFFQ 158


>gi|297620926|ref|YP_003709063.1| tRNA-specific adenosine deaminase [Waddlia chondrophila WSU
           86-1044]
 gi|297376227|gb|ADI38057.1| tRNA-specific adenosine deaminase [Waddlia chondrophila WSU
           86-1044]
          Length = 176

 Score = 82.6 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 17/125 (13%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
           ++ D  +M AAL+ +            V  ++VK+G VI RG            HAE+  
Sbjct: 16  ANEDETYMLAALKEAWKA--FVKGEVPVGAILVKEGKVIARGHNQVEMLRDATAHAEMLC 73

Query: 60  L--EEAGEE---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           +   EA E+     GAT Y T+EPCS       CA  ++   +  +V    D     +G 
Sbjct: 74  ITVAEAAEDNWRLNGATLYCTIEPCSM------CAGAMLLSRVSTLVWGAPDIRHGANGS 127

Query: 115 GLQWL 119
            +   
Sbjct: 128 WVNLF 132


>gi|119468555|ref|ZP_01611646.1| tRNA-specific adenosine deaminase [Alteromonadales bacterium TW-7]
 gi|119448063|gb|EAW29328.1| tRNA-specific adenosine deaminase [Alteromonadales bacterium TW-7]
          Length = 165

 Score = 82.6 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 17/130 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M     +A +M  AL +++    L      V  ++VKD  +I  G     T      HAE
Sbjct: 1   MNKPFDNAYWMEQALLYAKQAEQLNE--IPVGAVLVKDNQLIASGYNRSITDNDPSAHAE 58

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ EAG+          T YVTLEPCS       CA  ++   I+R+V    D     
Sbjct: 59  MIAVREAGKALNNYRLIDCTLYVTLEPCSM------CAGLLVHSRIKRLVFGAPDAKTGS 112

Query: 112 SGRGLQWLSQ 121
           +G  +  L +
Sbjct: 113 AGSIMNLLQE 122


>gi|325207969|gb|ADZ03421.1| putative tRNA-specific adenosine deaminase [Neisseria meningitidis
           NZ-05/33]
          Length = 148

 Score = 82.6 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 62/150 (41%), Gaps = 22/150 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
           A FM  AL  ++    L    P V  +IV DG +I               HAE+ AL +A
Sbjct: 2   AHFMGLALEQAKLSA-LMGEIP-VGAVIVSDGKIIASAHNTCIADCNVSRHAEINALAQA 59

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G E +     G   Y+TLEPC+       CA  +I+  IRRV+    +P    +G  +  
Sbjct: 60  GSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGAAEPKTGAAGSIVNL 113

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYLT 143
                L+    I   +++ E +  L  +  
Sbjct: 114 FADKRLNTHTAIRGGILQEECRAVLSRFFQ 143


>gi|307706899|ref|ZP_07643700.1| tRNA-specific adenosine deaminase [Streptococcus mitis SK321]
 gi|307617691|gb|EFN96857.1| tRNA-specific adenosine deaminase [Streptococcus mitis SK321]
          Length = 155

 Score = 82.6 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 57/149 (38%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  ALR +   + L      + C+IVK+G +IGRG  A         HAE+ A+E A
Sbjct: 9   EVFMREALREAE--IALEHDEIPIGCVIVKEGEIIGRGHNAREELQRAVMHAEIMAIENA 66

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I  VV    +     +G     
Sbjct: 67  NLSEESWRLLDCTLFVTIEPC------VMCSGAIGLARIPNVVYGAKNQKFGAAGSLYDI 120

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   ++E E    +  + 
Sbjct: 121 LTDERLNHRVEVETGILEDECAAIMQDFF 149


>gi|238926792|ref|ZP_04658552.1| deaminase [Selenomonas flueggei ATCC 43531]
 gi|238885324|gb|EEQ48962.1| deaminase [Selenomonas flueggei ATCC 43531]
          Length = 152

 Score = 82.6 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 56/158 (35%), Gaps = 26/158 (16%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV----TAYGGCPHA 55
           MP    D   M  AL  ++    L    P +  +I+ D G VI  G     T +    HA
Sbjct: 1   MP---DDLHGMRLALEEAKRA-YLCGEVP-IGAVILDDAGSVISSGYNLRETEHDATAHA 55

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+  A +        G T YVT+EPC      P CA  I+   I RVV    D    
Sbjct: 56  ELIAIRRACKALGRWRLTGLTLYVTIEPC------PMCAGAIVMSRISRVVYGSADSKAG 109

Query: 111 VSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLT 143
                       G+     +   ++  E    L  +  
Sbjct: 110 ACESLFNITGCSGLNHQPDVCAGVLAEECAALLRNFFQ 147


>gi|170751176|ref|YP_001757436.1| CMP/dCMP deaminase zinc-binding [Methylobacterium radiotolerans JCM
           2831]
 gi|170657698|gb|ACB26753.1| CMP/dCMP deaminase zinc-binding [Methylobacterium radiotolerans JCM
           2831]
          Length = 160

 Score = 82.6 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 15/116 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
           +S    +FM+ A+  S     + S      C+IV+DG +I  G            H E++
Sbjct: 1   MSDNHEKFMARAIALSEKTSLVDSAGGVFGCVIVQDGEIIAEGANRVVAENDPTWHGEIE 60

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           A+ +A +     + R AT Y + EPC      P C       G++ V       D 
Sbjct: 61  AIRKACKAQGSFKLRNATLYTSAEPC------PMCMAAAYWAGVKNVYYAAQVEDA 110


>gi|256396492|ref|YP_003118056.1| hypothetical protein Caci_7389 [Catenulispora acidiphila DSM 44928]
 gi|256362718|gb|ACU76215.1| bifunctional deaminase-reductase domain protein [Catenulispora
           acidiphila DSM 44928]
          Length = 258

 Score = 82.6 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 71/209 (33%), Gaps = 37/209 (17%)

Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
           L          R  +   +  + D     A   S  I+G   K    +LRA +D +LVG 
Sbjct: 16  LAEVYAYPTGARRWVRANMVATVDG-AATASGKSEGISGEADKRIFGVLRALADVVLVGA 74

Query: 198 GTVLADDPELTCRLNGLQEHSPMRI--------------------ILDPHFKLSLDSKII 237
           GTV A            +++ P R+                    ++     L     + 
Sbjct: 75  GTVRA------------EQYRPTRVREQYQAARAAAGQAPTAAVAVVSRAMDLDWTMSLF 122

Query: 238 KTALLAPVIIVTENDDPVLAL-AFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEG 294
            T+   P I++T  D P   + A  +    +I       DL   +  L  RG+  +L EG
Sbjct: 123 -TSPAVPTIVLTATDAPQAQVDAATEAGAEVIAAGTGDVDLALAVDRLAERGLGRILCEG 181

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           G  +      +  +D + L  +  + G  
Sbjct: 182 GPHLLAQLAAAGKMDELCLSMAPQLRGGD 210


>gi|116629038|ref|YP_814210.1| cytosine/adenosine deaminase [Lactobacillus gasseri ATCC 33323]
 gi|238853616|ref|ZP_04643985.1| tRNA-specific adenosine deaminase [Lactobacillus gasseri 202-4]
 gi|311111167|ref|ZP_07712564.1| cytidine/deoxycytidylate deaminase family protein [Lactobacillus
           gasseri MV-22]
 gi|116094620|gb|ABJ59772.1| tRNA-adenosine deaminase [Lactobacillus gasseri ATCC 33323]
 gi|238833760|gb|EEQ26028.1| tRNA-specific adenosine deaminase [Lactobacillus gasseri 202-4]
 gi|311066321|gb|EFQ46661.1| cytidine/deoxycytidylate deaminase family protein [Lactobacillus
           gasseri MV-22]
          Length = 160

 Score = 82.6 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 53/152 (34%), Gaps = 27/152 (17%)

Query: 8   ARFMSAALRFSRWH--VGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQAL 60
            ++M  A   ++     G       +  ++V KDG VIG G            HAE+ A+
Sbjct: 8   EKYMQLAFAQAKKAEDQGEV----PIGAIVVDKDGNVIGEGYNRRELDEDATQHAEMIAI 63

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A +          + ++TLEPC      P C+  II   +  V     DP    +G  
Sbjct: 64  RQACQNLGSWRLVDCSLFITLEPC------PMCSGAIINSRLAEVYYGAFDPKAGAAGSV 117

Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
           +             +   + + +    L  + 
Sbjct: 118 IDLFKVEKFNHHPKVFGGLFKDQAAQMLKDFF 149


>gi|220907233|ref|YP_002482544.1| CMP/dCMP deaminase [Cyanothece sp. PCC 7425]
 gi|219863844|gb|ACL44183.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 7425]
          Length = 144

 Score = 82.6 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 18/147 (12%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAG 64
           +FM AA+  +R   GL      +  ++VK+G +IGRG       G P  HAE+  L++AG
Sbjct: 3   QFMQAAIAEAR--TGLQEGGIPIGSVLVKNGEIIGRGHNQRVQQGNPIIHAEIDCLQQAG 60

Query: 65  --EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                +  T Y TL PC        CA  +++ GI++V+               +++   
Sbjct: 61  RIGRYQDTTLYSTLMPCY------LCAGAVVQFGIKKVIAGESYTFPGAR----EFMESH 110

Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKR 149
           G+ V  +   E K  +  ++  + +  
Sbjct: 111 GVEVIDLDLQECKQLMQDFIQAKPQLW 137


>gi|293194557|ref|ZP_06610019.1| tRNA-specific adenosine deaminase [Actinomyces odontolyticus F0309]
 gi|292819677|gb|EFF78695.1| tRNA-specific adenosine deaminase [Actinomyces odontolyticus F0309]
          Length = 332

 Score = 82.6 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 52/200 (26%), Positives = 75/200 (37%), Gaps = 34/200 (17%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV------TAYGGCPHAEVQALEEA 63
           M  AL  +      T   P V  +IV  +G +IGRG           G  HAE+ AL EA
Sbjct: 1   MGKALFLANRAR-ETGDVP-VGAVIVDENGRIIGRGWNCREANHDPAG--HAEIVALREA 56

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G         G T  VTLEPC        CA  I+   I RVV    DP    +G     
Sbjct: 57  GRARGTWRLTGCTLIVTLEPC------TMCAGAILASRIDRVVFGAWDPKAGAAGSLRDV 110

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYL--TRQVEKRSHITLKIAVSQDNMIGMAGCGS 171
           L    +     ++  ++  E  + L ++    R  ++   +   +    D +  +     
Sbjct: 111 LRDARMPHPTEVIGGVLAQEAAMQLRSFFLSCRTPDEMPVVQAPVHEPSDLVAPI----V 166

Query: 172 VPITGFISKNQVHLLRAQSD 191
           VP     + +QVH   A  D
Sbjct: 167 VPYEEDEAPDQVHEE-ASHD 185


>gi|169335874|ref|ZP_02863067.1| hypothetical protein ANASTE_02307 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258612|gb|EDS72578.1| hypothetical protein ANASTE_02307 [Anaerofustis stercorihominis DSM
           17244]
          Length = 145

 Score = 82.6 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 52/138 (37%), Gaps = 22/138 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           +M  A++ +         +  V  LIVKD  +I +             HAE+ A+ EA  
Sbjct: 4   YMLLAVQEALKS----GKDVPVGALIVKDDKIISKAHNEVIKNNDPTAHAEILAIREACS 59

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL- 119
                   G + YVTLEPC      P CA  II   I +VV    D D    G     L 
Sbjct: 60  ILDSYNLSGCSIYVTLEPC------PMCAGAIINAKIDKVVYGAMDMDYGACGSKYNLLE 113

Query: 120 --SQKGIIVDRMMESEGK 135
               K I V   +E +  
Sbjct: 114 DNRAKSIEVYAGIEEDKC 131


>gi|210076069|ref|XP_505753.2| YALI0F22517p [Yarrowia lipolytica]
 gi|199424977|emb|CAG78564.2| YALI0F22517p [Yarrowia lipolytica]
          Length = 150

 Score = 82.6 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 21/156 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEV 57
           ++  DA++M+ A+  +            +  ++V  DG V+G+G            H E+
Sbjct: 1   MALDDAKYMAMAIEQATKSKNEGG--IPIGAVLVAGDGTVLGKGHNRRIQHGSAVHHGEI 58

Query: 58  QALEEAGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            AL+ AG  A    + AT Y TL PC        C    I  G++RVV+  +D  V    
Sbjct: 59  DALQNAGRLAGKVYKDATMYTTLSPCDM------CTGACIMFGVKRVVMGENDTFVGGD- 111

Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
               +L  +GI V  +   E K  +  ++T   E+ 
Sbjct: 112 ---DYLRARGIEVVNLKNDECKQLMDEFITAHPEEW 144


>gi|269468375|gb|EEZ80040.1| cytosine/adenosine deaminase [uncultured SUP05 cluster bacterium]
          Length = 156

 Score = 82.6 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 46/121 (38%), Gaps = 17/121 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
           SS D ++M  AL  +R+          V  ++VK+  +I               HAE+Q 
Sbjct: 5   SSLDEKWMKIALEQARFAQAKNE--VPVGAILVKNDQLIASAHNQPISNNDPTAHAEIQL 62

Query: 60  LEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           L  AG+          T YVTLEPC        C   +I   + RVV    D    V G 
Sbjct: 63  LRVAGKRLNNYRLPNTTLYVTLEPC------TMCLGAMIHARVSRVVFGAYDKKTGVCGS 116

Query: 115 G 115
            
Sbjct: 117 C 117


>gi|94969013|ref|YP_591061.1| tRNA-adenosine deaminase [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551063|gb|ABF40987.1| tRNA-adenosine deaminase [Candidatus Koribacter versatilis
           Ellin345]
          Length = 152

 Score = 82.6 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 49/124 (39%), Gaps = 17/124 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEE 62
           D  FM  ALR +       S    +  ++V    +IGRG            HAE+ A+ E
Sbjct: 3   DELFMEEALREAARAQ--ASGEVPIGAVVVYQDKIIGRGWNRPAFECDPTAHAEIIAIRE 60

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AG             +VTLEPC+       CA  I    IRR++   DDP        LQ
Sbjct: 61  AGRELGNYRLTDCELFVTLEPCAM------CAGAITHARIRRLIYAADDPKAGAVKSALQ 114

Query: 118 WLSQ 121
            L+ 
Sbjct: 115 VLNH 118


>gi|227486589|ref|ZP_03916905.1| nucleoside deaminase [Anaerococcus lactolyticus ATCC 51172]
 gi|227235407|gb|EEI85422.1| nucleoside deaminase [Anaerococcus lactolyticus ATCC 51172]
          Length = 158

 Score = 82.6 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 17/115 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQ 58
            +  D  FM+ A+  ++     +     +  ++V    ++GRG            HAE+ 
Sbjct: 5   FTKADKFFMTEAINEAKLAK--SIDEVPIGAVVVCGDRIVGRGHNFTYKGKSALNHAEIY 62

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           AL+EAG+          T YVTLEPC        CA  I+   ++R+V+   DP 
Sbjct: 63  ALKEAGKNIGDFRLEECTMYVTLEPCLM------CAGAIMHSRVKRLVIACKDPK 111


>gi|21224388|ref|NP_630167.1| hypothetical protein SCO6058 [Streptomyces coelicolor A3(2)]
 gi|4691384|emb|CAB41551.1| putative hydrolase [Streptomyces coelicolor A3(2)]
          Length = 265

 Score = 82.6 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 72/215 (33%), Gaps = 16/215 (7%)

Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           G   DR          +AY      +R+ +   +  + D         S PI+       
Sbjct: 20  GPETDREWSLAELAAAYAYPEPDAHRRTWLRANMVSTLDG-AAQHDGRSQPISSAADMRV 78

Query: 183 VHLLRAQSDAILVGIGTVL----------ADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
              LRA +D ++ G  TV           AD  E   R    Q   P+  ++    +L  
Sbjct: 79  FGTLRALADVVIAGAETVRQEGYRPGRARADFAE--ARRAAGQAPVPVIAVVSASLELDF 136

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD---CRDLKKLLTILVGRGVTS 289
              +  +  +  +++      P    A  +    ++        D  + L  L   G T 
Sbjct: 137 SLPLFTSPAVPTLVLTGAAAAPDRIAAAERAGARVVIAGDGVGVDPARALGALAELGHTR 196

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           LL EGG  +   F+ + ++D + L  S ++     
Sbjct: 197 LLTEGGPRLLGQFVAAGVLDELCLTVSPMLTAGDA 231


>gi|116495716|ref|YP_807450.1| cytosine/adenosine deaminase [Lactobacillus casei ATCC 334]
 gi|116105866|gb|ABJ71008.1| tRNA-adenosine deaminase [Lactobacillus casei ATCC 334]
          Length = 168

 Score = 82.6 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 17/122 (13%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
           +FM AAL  ++    +      +  +IV  G +IGRG     T      HAE+ A++ A 
Sbjct: 8   QFMDAALTEAKKAAAI--GEVPIGAVIVHQGEIIGRGYNLRETTQDATYHAEMLAIQAAC 65

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           +          + +VTLEPC      P CA  +I   +        DP   V+G     L
Sbjct: 66  KTLGTWRLEDCSLFVTLEPC------PMCAGAMINARVATCYFGATDPKAGVAGTFYNLL 119

Query: 120 SQ 121
           + 
Sbjct: 120 AD 121


>gi|88813576|ref|ZP_01128809.1| riboflavin biosynthesis protein RibD [Nitrococcus mobilis Nb-231]
 gi|88789205|gb|EAR20339.1| riboflavin biosynthesis protein RibD [Nitrococcus mobilis Nb-231]
          Length = 88

 Score = 82.6 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 45/81 (55%)

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
           M  + +     +  R +    ++  K+A+S D    MA   S  IT   ++  VH L+A+
Sbjct: 1   MAEQAQTLNPGFFKRMLTGLPYLRCKLAMSLDGRTAMASGESRWITAAAARGDVHHLQAR 60

Query: 190 SDAILVGIGTVLADDPELTCR 210
           SDA+L G GTVLADDP+LT R
Sbjct: 61  SDALLTGHGTVLADDPQLTAR 81


>gi|32455577|ref|NP_862060.1| putative deaminase [Streptomyces lividans]
 gi|28883228|gb|AAO61161.1| putative deaminase [Streptomyces lividans]
 gi|89357155|gb|ABD72321.1| pQC542.17 [Streptomyces lividans]
          Length = 155

 Score = 82.6 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 62/137 (45%), Gaps = 8/137 (5%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG-CPHAEVQA 59
           P    D R++  A+  +           SV  +IV  DG  +  G +   G   HAE  A
Sbjct: 4   PDRDQDLRWIQRAIDLAALCPPAAGAY-SVGAVIVSEDGTELATGYSRATGPHEHAEEVA 62

Query: 60  LEEAGEE---ARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRV-SGR 114
           L +  ++     GAT Y TLEPCS       PCAQ ++  GI RVV+   +P + V    
Sbjct: 63  LAQLPQDDPRLAGATIYSTLEPCSQRRSPRTPCAQRVLAAGIPRVVIAWREPSLFVDDCV 122

Query: 115 GLQWLSQKGIIVDRMME 131
           G + L Q G+ V  + E
Sbjct: 123 GYEQLIQAGVTVVELPE 139


>gi|307544260|ref|YP_003896739.1| CMP/dCMP deaminase, zinc-binding [Halomonas elongata DSM 2581]
 gi|307216284|emb|CBV41554.1| CMP/dCMP deaminase, zinc-binding [Halomonas elongata DSM 2581]
          Length = 155

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 18/125 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA----YGGCPHAEVQALE 61
           D  +M  A+  +R      +    V  ++V + G ++G G  A    +    HAE++AL 
Sbjct: 4   DEYYMHRAMDQARRAE--AAGEVPVGAVVVDRAGEIVGSGFNAPVSDHDPSAHAEIRALR 61

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           +AG         G T +VTLEPC        C   II   + RVV    +P   +     
Sbjct: 62  DAGTRLGNYRLDGCTLFVTLEPCLM------CTGAIIHARLARVVYGAAEPRSGMVESRA 115

Query: 117 QWLSQ 121
              +Q
Sbjct: 116 NLFAQ 120


>gi|325270697|ref|ZP_08137293.1| tRNA-specific adenosine deaminase [Prevotella multiformis DSM
           16608]
 gi|324986992|gb|EGC18979.1| tRNA-specific adenosine deaminase [Prevotella multiformis DSM
           16608]
          Length = 199

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 55/145 (37%), Gaps = 17/145 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  +M  AL  +          P V  ++V    +I R      T      HAE+QA+  
Sbjct: 59  DLYYMRQALAEAE-AAYREGEIP-VGAVVVCRDRIIARAHNLTETLNDVTAHAEMQAITM 116

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G+  +  T YVTLEPC        CA  I    +RR+V    D          +
Sbjct: 117 AASGLGGKYLQDCTLYVTLEPC------TMCAGAIGWAQLRRMVYGCPDEKRGYRLYAPR 170

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYL 142
            L  +  +V  +ME E K  +  + 
Sbjct: 171 ALHPRAEVVCGVMEEECKALMQRFF 195


>gi|261367117|ref|ZP_05980000.1| tRNA-specific adenosine deaminase [Subdoligranulum variabile DSM
           15176]
 gi|282571240|gb|EFB76775.1| tRNA-specific adenosine deaminase [Subdoligranulum variabile DSM
           15176]
          Length = 153

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 57/149 (38%), Gaps = 21/149 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
           D + M  AL  +R    L      V  +I KDG ++ R             HAE+ A++ 
Sbjct: 3   DEQLMQVALEEARIAAAL--GEVPVGAVIAKDGEIVARAHNLRERGKNATYHAELLAIDA 60

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +   G        +VTLEPC      P C+  II   +RRVV    DP     G    
Sbjct: 61  ACKALGGWRLWQCELFVTLEPC------PMCSGAIINSRLRRVVYGARDPKAGCCGGLTD 114

Query: 118 WLS----QKGIIVDRMMESEGKIFLHAYL 142
             +       +I   +++ + +  L  + 
Sbjct: 115 LFALPFNHHPVIEQGLLQEDAQALLQDFF 143


>gi|296875658|ref|ZP_06899727.1| possible cytosine deaminase [Streptococcus parasanguinis ATCC
           15912]
 gi|322390383|ref|ZP_08063906.1| tRNA-specific adenosine deaminase [Streptococcus parasanguinis ATCC
           903]
 gi|296433342|gb|EFH19120.1| possible cytosine deaminase [Streptococcus parasanguinis ATCC
           15912]
 gi|321142924|gb|EFX38379.1| tRNA-specific adenosine deaminase [Streptococcus parasanguinis ATCC
           903]
          Length = 180

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 22/147 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           FM  AL+ +   + L +    + C++VKDG +IGRG  A         HAE+ A+EEA +
Sbjct: 22  FMREALKEAE--IALANDEIPIGCVLVKDGQIIGRGHNAREELQRAVMHAEIMAIEEANQ 79

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                     T +VT+EPC        C+  I    I +V+    +     +G     L+
Sbjct: 80  RENSWRLLDTTLFVTIEPC------VMCSGAIGLARIPQVIYGATNQKFGGAGSLYDILA 133

Query: 121 -----QKGIIVDRMMESEGKIFLHAYL 142
                 +  +   ++E+E    +  + 
Sbjct: 134 DERLNHRVEVETGILEAECAAIMQTFF 160


>gi|156932900|ref|YP_001436816.1| hypothetical protein ESA_00702 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531154|gb|ABU75980.1| hypothetical protein ESA_00702 [Cronobacter sakazakii ATCC BAA-894]
          Length = 213

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 55/149 (36%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL + 
Sbjct: 49  EYWMRHALTLAQRAW--DEGEVPVGAVLVHNNQVIGEGWNRPIGRHDPTAHAEIMALRQG 106

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +       T YVTLEPC        CA  ++   I  +V    D      G  +  
Sbjct: 107 GLVLQNYRLLDTTLYVTLEPC------VMCAGAMVHGRIGTLVFGARDAKTGAVGSLMDI 160

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYL 142
               G+     +++ ++ +E    L A+ 
Sbjct: 161 TGHPGMNHQVQVIEGILATECSAMLSAFF 189


>gi|322378196|ref|ZP_08052680.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           sp. M334]
 gi|321280826|gb|EFX57842.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           sp. M334]
          Length = 155

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 57/149 (38%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  ALR +   + L      + C+IVKDG +IGRG  A         HAE+ A+E A
Sbjct: 9   EVFMREALREAE--IALEHDEIPIGCVIVKDGAIIGRGHNAREELQRAVMHAEIMAIENA 66

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I  VV    +     +G     
Sbjct: 67  NLSEESWRLLDCTLFVTIEPC------VMCSGAIGLARIPNVVYGAKNQKFGAAGSLYDI 120

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   ++E E    +  + 
Sbjct: 121 LTDERLNHRVDVETGILEDECAAIMQNFF 149


>gi|78224707|ref|YP_386454.1| tRNA-adenosine deaminase [Geobacter metallireducens GS-15]
 gi|78195962|gb|ABB33729.1| tRNA-adenosine deaminase [Geobacter metallireducens GS-15]
          Length = 171

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 56/151 (37%), Gaps = 22/151 (14%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
            D+ +M  ALR +            +  ++V++G VIGRG            HAE+ A+ 
Sbjct: 11  DDSYWMGKALREAEKAAARDEV--PIGAVVVRNGAVIGRGHNLRENKQDPSAHAEMIAIR 68

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           +A          G   YVTLEPC        C   II     RVV    DP    +G   
Sbjct: 69  QAARRLGCWRLTGCVLYVTLEPCLM------CMGAIILARFDRVVFGCHDPKGGAAGSLY 122

Query: 117 QW-----LSQKGIIVDRMMESEGKIFLHAYL 142
                  L+ +  +  R+ E E    L  + 
Sbjct: 123 DLSDDRRLNHRVELTSRVREEECSAILSGFF 153


>gi|256844520|ref|ZP_05550006.1| cytidine/deoxycytidylate deaminase [Lactobacillus crispatus
           125-2-CHN]
 gi|256849091|ref|ZP_05554524.1| cytidine/deoxycytidylate deaminase [Lactobacillus crispatus
           MV-1A-US]
 gi|262047573|ref|ZP_06020528.1| cytidine/deoxycytidylate deaminase [Lactobacillus crispatus
           MV-3A-US]
 gi|312977923|ref|ZP_07789669.1| cytidine/deoxycytidylate deaminase family protein [Lactobacillus
           crispatus CTV-05]
 gi|256613598|gb|EEU18801.1| cytidine/deoxycytidylate deaminase [Lactobacillus crispatus
           125-2-CHN]
 gi|256713867|gb|EEU28855.1| cytidine/deoxycytidylate deaminase [Lactobacillus crispatus
           MV-1A-US]
 gi|260572149|gb|EEX28714.1| cytidine/deoxycytidylate deaminase [Lactobacillus crispatus
           MV-3A-US]
 gi|310895230|gb|EFQ44298.1| cytidine/deoxycytidylate deaminase family protein [Lactobacillus
           crispatus CTV-05]
          Length = 166

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 58/156 (37%), Gaps = 24/156 (15%)

Query: 3   VSSFDAR-FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAE 56
           +SS D R +M  A+  ++           +  ++V  DG V+G G            HAE
Sbjct: 2   LSSEDKRKYMQLAIDQAKEAEKQ--GEVPIGAVVVDPDGRVVGTGYNRRELDEDATQHAE 59

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A++EA  +         + +VTLEPC      P CA  II   I+ V     DP    
Sbjct: 60  MIAIKEACSKLGMWRLIDCSLFVTLEPC------PMCAGAIINSRIKDVYFGALDPKAGA 113

Query: 112 SGR-----GLQWLSQKGIIVDRMMESEGKIFLHAYL 142
            G       ++  +     +  +   +    L  + 
Sbjct: 114 CGSVVDLFSVEKFNHHPHAIRGLYRDQCAQMLKDFF 149


>gi|331012489|gb|EGH92545.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 123

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 6/109 (5%)

Query: 247 IVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           +VT            + +  +   D     DL+KL+  L  RGV  +LVE G  +A +F 
Sbjct: 2   VVTCAAASARGRYQEEGHEMLALADSAGHVDLRKLMVELATRGVNEVLVEAGPRLAGAFA 61

Query: 304 NSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSD 349
              LVD   ++ +   +G    P    PL +         V+    G+D
Sbjct: 62  RLGLVDEFQIFIAGKFLGSSARPLLDLPLAQMSEALELNIVQMRAVGND 110


>gi|154508436|ref|ZP_02044078.1| hypothetical protein ACTODO_00935 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798070|gb|EDN80490.1| hypothetical protein ACTODO_00935 [Actinomyces odontolyticus ATCC
           17982]
          Length = 435

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/200 (25%), Positives = 74/200 (37%), Gaps = 34/200 (17%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV------TAYGGCPHAEVQALEEA 63
           M  AL  +      T   P V  ++V  +G +IGRG           G  HAE+ AL EA
Sbjct: 1   MGKALFLANRAR-ETGDVP-VGAVVVDENGRIIGRGWNCREANHDPAG--HAEIVALREA 56

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G         G T  VTLEPC        CA  I+   I RVV    DP    +G     
Sbjct: 57  GRSRGTWRLTGCTLIVTLEPC------TMCAGAILASRIDRVVFGAWDPKAGAAGSLRDV 110

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYL--TRQVEKRSHITLKIAVSQDNMIGMAGCGS 171
           L    +     ++  ++  E  + L ++    R   +   +   +    D +  +     
Sbjct: 111 LRDARMPHPTEVIGGVLAQEAAMQLRSFFLSCRTPNEMPVVQAPVHEPSDLVAPI----V 166

Query: 172 VPITGFISKNQVHLLRAQSD 191
           VP     +  QVH  +A  D
Sbjct: 167 VPYEEDEAPEQVHE-KATHD 185


>gi|329770051|ref|ZP_08261446.1| hypothetical protein HMPREF0433_01210 [Gemella sanguinis M325]
 gi|328837362|gb|EGF86992.1| hypothetical protein HMPREF0433_01210 [Gemella sanguinis M325]
          Length = 155

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
            +M  AL  +R           +  ++V DG V+  G            HAE+ A+++A 
Sbjct: 6   YYMELALEEARSA--YEKGEVPIGAVLVVDGQVVACGHNTREETQQALNHAEMIAIKKAC 63

Query: 65  EE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL--- 116
           E+        +  Y T+EPC        C+  I++  +  V+    DP     G  +   
Sbjct: 64  EKQGFWRLDNSYLYTTIEPC------VMCSGAIVQARVENVIYGAKDPKYGCCGSCMDLV 117

Query: 117 --QWLSQKGIIVDRMMESEGKIFLHAYL 142
                + +  ++  ++E E    +  + 
Sbjct: 118 SDNKFNHQANVISGVLEDECSSLMRNFF 145


>gi|300362312|ref|ZP_07058488.1| cytidine/deoxycytidylate deaminase [Lactobacillus gasseri JV-V03]
 gi|300353303|gb|EFJ69175.1| cytidine/deoxycytidylate deaminase [Lactobacillus gasseri JV-V03]
          Length = 160

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 53/157 (33%), Gaps = 23/157 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHA 55
           M   S    +M  A   ++           +  ++V KDG VIG G            HA
Sbjct: 1   MFEKSDKEEYMQLAFAQAKKAE--DQGEVPIGAIVVDKDGNVIGEGYNRRELDEDATQHA 58

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+ EA +          + ++TLEPC      P C+  II   +  V     DP   
Sbjct: 59  EMIAIREACKNLGSWRLVDCSLFITLEPC------PMCSGAIINSRLAEVYYGAFDPKAG 112

Query: 111 VSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
            +G  +             +   + + +    L  + 
Sbjct: 113 AAGSVIDLFKVEKFNHHPQVFGGLFKDQAAQMLKDFF 149


>gi|167748009|ref|ZP_02420136.1| hypothetical protein ANACAC_02746 [Anaerostipes caccae DSM 14662]
 gi|167652586|gb|EDR96715.1| hypothetical protein ANACAC_02746 [Anaerostipes caccae DSM 14662]
          Length = 152

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 21/129 (16%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGEE-----ARGATAYVTLEPCS 80
            + C+IV DG +I R             HAE+ A+E+A ++         T Y+TLEPC 
Sbjct: 25  PIGCVIVLDGKIIARAYNQRNKRKTTLAHAELLAIEKASKKTGDWRLEECTMYITLEPCQ 84

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS------QKGIIVDRMMESEG 134
                  CA  I++  I +VV+   +P    +G  L  L       Q  I    + E   
Sbjct: 85  M------CAGAIVQARIPKVVIGAMNPKAGCAGSILNILQREEFNHQAEIESGVLREECS 138

Query: 135 KIFLHAYLT 143
            +    +  
Sbjct: 139 HMMSDFFRQ 147


>gi|283768643|ref|ZP_06341555.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bulleidia extructa W1219]
 gi|283105035|gb|EFC06407.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bulleidia extructa W1219]
          Length = 195

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 57/156 (36%), Gaps = 22/156 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           + + +  +MS A+  ++      S    + C+IV D +VI R             HAEV+
Sbjct: 41  MKNREEYYMSLAIEEAKKAEL--SDEVPIGCVIVCDDMVIARNHNHKESKNNAIYHAEVE 98

Query: 59  ALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+ EA              YVTLEPC        C   I+   +R +    D        
Sbjct: 99  AILEASKVKNNWNLNDCDLYVTLEPCMM------CTGAILNSRLRTIYYGADSFKAGFLK 152

Query: 114 RGLQWLSQKG-----IIVDRMMESEGKIFLHAYLTR 144
             +   + +G     +I   ++E E    L  Y  +
Sbjct: 153 TKINLEAIRGLNHYPVIKKGVLERECAQLLSRYFQK 188


>gi|118444046|ref|YP_879269.1| cytidine/deoxycytidylate deaminase family protein, pytative
           [Clostridium novyi NT]
 gi|118134502|gb|ABK61546.1| cytidine/deoxycytidylate deaminase family protein, pytative
           [Clostridium novyi NT]
          Length = 147

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 17/126 (13%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
            D +FM  AL  ++           V  +IVK+G VI               HAE+ A++
Sbjct: 1   MDKKFMEIALDEAKIAAL--KDEVPVGAVIVKNGEVIASAHNLRETLNDPTAHAEILAIK 58

Query: 62  EAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           +A    +         YVTLEPC      P C+  I++  IR++ +   DP +   G  +
Sbjct: 59  KASSILKNWRLNECEMYVTLEPC------PMCSGAILQSRIRKLYIGTIDPSMGCCGSVV 112

Query: 117 QWLSQK 122
             +  +
Sbjct: 113 DLVQNR 118


>gi|325697330|gb|EGD39216.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK160]
          Length = 165

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ +   + L      + C++VK+G +IGRG  A         HAE+ A+EEA
Sbjct: 19  EAFMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEA 76

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I  VV    +     +G     
Sbjct: 77  NRHENSWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVVYGAANQKFGAAGSLYDI 130

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   +++ E    +  + 
Sbjct: 131 LTDERLNHRVEVETGVLQEECAQIMQDFF 159


>gi|256784422|ref|ZP_05522853.1| hypothetical protein SlivT_08038 [Streptomyces lividans TK24]
 gi|289768301|ref|ZP_06527679.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces lividans TK24]
 gi|289698500|gb|EFD65929.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces lividans TK24]
          Length = 265

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 72/215 (33%), Gaps = 16/215 (7%)

Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           G   DR          +AY      +RS +   +  + D         S PI+       
Sbjct: 20  GPETDREWSLAELAAAYAYPEPDGHRRSWLRANMVSTLDG-AAQHDGRSQPISSAADMRV 78

Query: 183 VHLLRAQSDAILVGIGTVL----------ADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
              LRA +D ++ G  TV           AD  E   R    Q   P+  ++    +L  
Sbjct: 79  FGTLRALADVVIAGAETVRQEGYRPGRARADFAE--ARRAAGQAPVPVIAVVSASLELDF 136

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD---CRDLKKLLTILVGRGVTS 289
              +  +  +  +++      P    A  +    ++        D  + L  L   G T 
Sbjct: 137 SLPLFTSPAVPTLVLTGAAAAPDRIAAAERAGARVVIAGDGVGVDPARALGALGALGHTR 196

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           LL EGG  +   F+ + ++D + L  S ++     
Sbjct: 197 LLTEGGPRLLGQFVAAGVLDELCLTVSPMLTAGDA 231


>gi|171911154|ref|ZP_02926624.1| cytidine/deoxycytidylate deaminase family protein [Verrucomicrobium
           spinosum DSM 4136]
          Length = 176

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 53/150 (35%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  +M  ALR +R           +  +IV    +I R      T      HAE+ AL +
Sbjct: 13  DEHYMREALRQARKAARQDE--VPIGAVIVHGSQIIARAWNQVETLKDATAHAEMIALTQ 70

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A              YVT EPC      P CA  I+ C +RRV+    D     +G    
Sbjct: 71  AQGALGDWRLNECDLYVTKEPC------PMCAGAIMHCRVRRVIFGCPDLKGGAAGGYWN 124

Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYL 142
            L       +  I   ++  E    L ++ 
Sbjct: 125 LLQSPNLNHRSEITAGVLGEECVEVLKSFF 154


>gi|86740051|ref|YP_480451.1| hypothetical protein Francci3_1345 [Frankia sp. CcI3]
 gi|86566913|gb|ABD10722.1| bifunctional deaminase-reductase-like [Frankia sp. CcI3]
          Length = 273

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 75/219 (34%), Gaps = 12/219 (5%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD--- 204
              +I      S D      G  S P+ G        LLR  SD +LVG GT   ++   
Sbjct: 57  HTPYIRANFVASVDG-AAEVGGRSGPLGGEADLRVFRLLRWLSDVVLVGAGTARTENYGP 115

Query: 205 ----PELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
               PE   R    GL    P+ ++          +++ +  +   ++            
Sbjct: 116 VVIPPERRERRVAAGLAAVPPIAVVTATAG-FDPGARLFRGEIRPVLLTCETAPLDRRRR 174

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
                +I I      +    +  L  RG+T +L EGG  +      + L+D + L  + +
Sbjct: 175 LAAVADIAICGGSAVEPDLAVRALAERGMTRILTEGGPLLHSQLAAAGLLDELCLTIAPV 234

Query: 319 VIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-LEYIG 356
           + G G +     E +     + + +     DV  L Y  
Sbjct: 235 LAGPGRLGIMKGEPWPAPAALTLTQILAEDDVLFLRYRR 273


>gi|21231608|ref|NP_637525.1| hypothetical protein XCC2169 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768270|ref|YP_243032.1| hypothetical protein XC_1949 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188991407|ref|YP_001903417.1| Putative cytidine / deoxycytidylate deaminase family protein
           [Xanthomonas campestris pv. campestris str. B100]
 gi|21113299|gb|AAM41449.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573602|gb|AAY49012.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167733167|emb|CAP51365.1| Putative cytidine / deoxycytidylate deaminase family protein
           [Xanthomonas campestris pv. campestris]
          Length = 171

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 63/160 (39%), Gaps = 22/160 (13%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHAEVQAL 60
            D ++M+ ALR +          P V  ++V   G ++G G      ++    HAE+ A+
Sbjct: 16  IDQQWMTHALRLAERAERDYDEIP-VGAVLVDPTGALLGEGWNFNIASHDPSAHAEIMAM 74

Query: 61  EE-----AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            E     A     G T YVTLEPC+       CA  +I   I RVV    DP     G  
Sbjct: 75  REGGRRLANHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGACGSV 128

Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
              L+      +  +   ++ +E  + L  Y   +  K  
Sbjct: 129 FDLLADPRHNHRVQVSGGVLAAEAGLRLTNYFRAKRGKPP 168


>gi|76799055|ref|ZP_00781248.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           agalactiae 18RS21]
 gi|76585592|gb|EAO62157.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           agalactiae 18RS21]
          Length = 168

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 60/151 (39%), Gaps = 22/151 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM+ AL+ ++    L      + C+IVKDG +IGRG  A         HAE+ A+  A
Sbjct: 10  EWFMTEALKXAKSS--LEKEEIPIGCVIVKDGHIIGRGHNAREEFNKAILHAEIMAINNA 67

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            E+         T +VT+EPC        C+  I    I  V+    +     +G     
Sbjct: 68  NEKVGNWRLLDTTLFVTVEPC------VMCSGAIGLARIPHVIYGAKNTKFGAAGSLYDI 121

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYLTR 144
                L+ +  +   ++E +    +  +  +
Sbjct: 122 LSDSRLNHRVEVETGILEDQCAKIMQDFFRK 152


>gi|326392730|ref|ZP_08214020.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter ethanolicus
          JW 200]
 gi|325991229|gb|EGD49931.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter ethanolicus
          JW 200]
          Length = 46

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 24/43 (55%)

Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP 53
          M  AL+ +    G T+ NP V  +IVK+G +IG G   Y G P
Sbjct: 1  MKRALKLTEKGWGYTNPNPLVGAVIVKNGKIIGEGYHEYFGGP 43


>gi|33239578|ref|NP_874520.1| pyrimidine reductase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33237103|gb|AAP99172.1| Pyrimidine reductase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 223

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 78/227 (34%), Gaps = 22/227 (9%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV------ 200
                I L +A+S D  +  +  G   + G   +  +    A SDA L+G GT+      
Sbjct: 1   MSLPWIRLVLAISLDGRLAPSNGGKANLGGEGDRRVLEEALAWSDATLMGSGTLKIHKNT 60

Query: 201 -LADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
            L  D +L  R    Q     P+ +I+          +  +  +   ++I          
Sbjct: 61  CLIHDSKL-IRERHTQGRSTQPISLIISKQSSFPQTWQFFRQPITRWLLI-----PKAKT 114

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
             F  +          +    L  L  +G + +++ GG  +  S +    VD + L  + 
Sbjct: 115 QIFTSEGFEQQIVMQDNWSGTLHDLNQKGCSRIVLLGGIQLITSLLLEDKVDELQLTFTP 174

Query: 318 IVIGEG------GIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIGK 357
            ++G        G  S   E      +     +  G + V ++Y+ K
Sbjct: 175 RLLGGKYTWTASGKNSLPIELTKSDAWHLKGIEELGKNEVMIKYLRK 221


>gi|257062766|ref|YP_003142438.1| tRNA-adenosine deaminase [Slackia heliotrinireducens DSM 20476]
 gi|256790419|gb|ACV21089.1| tRNA-adenosine deaminase [Slackia heliotrinireducens DSM 20476]
          Length = 172

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 53/154 (34%), Gaps = 22/154 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D RFM AA+  +            +  ++V  G +I  G     T      HAE  A+
Sbjct: 14  EDDERFMRAAIEQAHLAEL--DGEVPIGAVVVCQGEIIAEGRNHRETDQDPSAHAEFSAI 71

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV---- 111
            +A  E         T YVTLEPC        C+  + +  I R V    DP        
Sbjct: 72  MQASRELERWRLPDCTVYVTLEPCIM------CSGLMHQARIGRCVYGAPDPKAGALGTL 125

Query: 112 -SGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
                 + L+    +   +++ E    L  +  R
Sbjct: 126 YQVHADERLNHTFEVTSGVLQDECARLLKDFFAR 159


>gi|86740605|ref|YP_481005.1| CMP/dCMP deaminase, zinc-binding [Frankia sp. CcI3]
 gi|86567467|gb|ABD11276.1| CMP/dCMP deaminase, zinc-binding [Frankia sp. CcI3]
          Length = 150

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/133 (33%), Positives = 64/133 (48%), Gaps = 8/133 (6%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT-AYGGCPHAEVQALEE- 62
            D R+M+ A+  +      T    SV  +IV ++G  I  G +       HAE  AL + 
Sbjct: 5   DDHRWMTRAIELAHRCPPATGAY-SVGAVIVGENGEEIAFGFSREVDDTVHAEESALAKV 63

Query: 63  AGEEAR--GATAYVTLEPCSHYGRSPP-CAQFIIECGIRRVVVCVDDPDVRVS-GRGLQW 118
           A ++ R   AT Y TLEPCS     P  C Q I+E  I RVV+   +P + V+  +G + 
Sbjct: 64  APDDPRLATATIYSTLEPCSQRMSWPRTCTQLILEAKIPRVVIAWREPSLFVADCQGYEL 123

Query: 119 LSQKGIIVDRMME 131
           L   G+ V  M E
Sbjct: 124 LGAAGVTVVGMPE 136


>gi|291295391|ref|YP_003506789.1| tRNA(Ile)-lysidine synthetase [Meiothermus ruber DSM 1279]
 gi|290470350|gb|ADD27769.1| tRNA(Ile)-lysidine synthetase [Meiothermus ruber DSM 1279]
          Length = 521

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 17/115 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
           S D   M +AL  +R      +    +  ++V DG V+               HAE+ AL
Sbjct: 378 SEDLEHMRSALEQARLAQQ--AGEVPIGAVVVWDGEVLAEAHNQVEQQCDATAHAELLAL 435

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           ++A  +       GAT YVTLEPC      P C   ++E  +RRVV  V++    
Sbjct: 436 QQALHKRHSKVLPGATVYVTLEPC------PMCFGALMEAQVRRVVYAVENLKAG 484


>gi|289166926|ref|YP_003445193.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           mitis B6]
 gi|288906491|emb|CBJ21321.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           mitis B6]
          Length = 155

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 57/149 (38%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  ALR +   + L      + C+IVKDG +IGRG  A         HAE+ A+E A
Sbjct: 9   EVFMREALREAD--IALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIENA 66

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I  VV    +     +G     
Sbjct: 67  NLSEESWRLIDCTLFVTIEPC------VMCSGAIGLARIPNVVYGAKNQKFGAAGSLYDI 120

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   ++E E    +  + 
Sbjct: 121 LTDERLNHRVDVETGILEDECAAIMQDFF 149


>gi|71733993|ref|YP_273732.1| cytosine deaminase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257486822|ref|ZP_05640863.1| cytosine deaminase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289625968|ref|ZP_06458922.1| cytosine deaminase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289647969|ref|ZP_06479312.1| cytosine deaminase [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298488192|ref|ZP_07006229.1| Cytosine deaminase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|71554546|gb|AAZ33757.1| cytosine deaminase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|298157471|gb|EFH98554.1| Cytosine deaminase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|320325406|gb|EFW81471.1| cytosine deaminase [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327453|gb|EFW83466.1| cytosine deaminase [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330869365|gb|EGH04074.1| cytosine deaminase [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330877290|gb|EGH11439.1| cytosine deaminase [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330988661|gb|EGH86764.1| cytosine deaminase [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331010292|gb|EGH90348.1| cytosine deaminase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 145

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 20/148 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGE 65
           FM AA+  ++  +GL      +  +IV +G +IGRG            H E+ ALE AG 
Sbjct: 4   FMQAAIDEAQ--LGLKEGGIPIGSVIVHEGKIIGRGHNRRVQEGSATRHGEMDALENAGR 61

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +     R A  Y TL PC+       C+  I+  GIR+V+V  +   +       + L  
Sbjct: 62  QPARVYRDAVLYTTLSPCAM------CSGAILLYGIRKVIVGENQSFMGEE----ELLRS 111

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           +G+ ++ +   E K  +  ++  + E  
Sbjct: 112 RGVQIEVLDNQECKHMMQGFIASKPELW 139


>gi|317473697|ref|ZP_07932984.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Anaerostipes sp. 3_2_56FAA]
 gi|316898818|gb|EFV20845.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Anaerostipes sp. 3_2_56FAA]
          Length = 152

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 21/128 (16%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGEE-----ARGATAYVTLEPCS 80
            + C+IV DG +I R             HAE+ A+E+A ++         T Y+TLEPC 
Sbjct: 25  PIGCVIVLDGKIIARAYNQRNKRKTTLAHAELLAIEKASKKTGDWRLEECTMYITLEPCQ 84

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS------QKGIIVDRMMESEG 134
                  CA  I++  I +VV+   +P    +G  L  L       Q  I    + E   
Sbjct: 85  M------CAGAIVQARIPKVVIGAMNPKAGCAGSILNILQREEFNHQAEIESGVLREECS 138

Query: 135 KIFLHAYL 142
            +    + 
Sbjct: 139 HMMSDFFR 146


>gi|332365217|gb|EGJ42980.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK1059]
          Length = 179

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ +   + L      + C++VK+G +IGRG  A         HAE+ A+EEA
Sbjct: 33  EAFMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEA 90

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I  VV    +     +G     
Sbjct: 91  NRHENSWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVVYGAANQKFGAAGSLYDI 144

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   +++ E    +  + 
Sbjct: 145 LTDERLNHRVEVEIGVLQEECAQIMQEFF 173


>gi|253682749|ref|ZP_04863545.1| tRNA-specific adenosine deaminase [Clostridium botulinum D str.
           1873]
 gi|253561071|gb|EES90524.1| tRNA-specific adenosine deaminase [Clostridium botulinum D str.
           1873]
          Length = 147

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 56/148 (37%), Gaps = 21/148 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ ++    +      V  +IVK+G VI               HAE+ A+++A
Sbjct: 3   EEFMKLALKEAKIAKNMDEV--PVGAIIVKEGKVIASAHNLREKLKDPTAHAEILAIKKA 60

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            E            YVTLEPC      P C   II+  I+++ +   DP     G  +  
Sbjct: 61  CEILGDWRLSDCEMYVTLEPC------PMCTGAIIQSRIKKIYIGTFDPVAGCCGSVVDL 114

Query: 119 LSQK----GIIVDRMMESEGKIFLHAYL 142
           +  +     I V  +   E    L  + 
Sbjct: 115 VQNRYLNTMIDVIWLYHKECSEILTNFF 142


>gi|172036189|ref|YP_001802690.1| putative cytidine/deoxycytidylate deaminase [Cyanothece sp. ATCC
           51142]
 gi|171697643|gb|ACB50624.1| putative cytidine/deoxycytidylate deaminase [Cyanothece sp. ATCC
           51142]
          Length = 184

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 53/149 (35%), Gaps = 23/149 (15%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT--AYGGCP--HAEVQALEEA 63
            +M  AL+ +     L      V  +I+     +I  G         P  HAE+ A+  A
Sbjct: 37  HWMRQALQLANKAAELGD--VPVGAVIINHQNNIIAEGYNSKEQNHDPTGHAEIMAIHRA 94

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            E          T YVTLEPC        CA  II+  +  +V  +DDP        L  
Sbjct: 95  SEILQSWHLEECTLYVTLEPCIM------CAGAIIQSRLGLLVYGLDDPKSGSIRTVLNL 148

Query: 119 LSQKG-----IIVDRMMESEGKIFLHAYL 142
                      ++  ++E E +  L  + 
Sbjct: 149 PDSAASNHRLSVLSGILEDECRQQLRDWF 177


>gi|304436805|ref|ZP_07396772.1| tRNA-specific adenosine deaminase [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304370198|gb|EFM23856.1| tRNA-specific adenosine deaminase [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 153

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 56/157 (35%), Gaps = 26/157 (16%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV----TAYGGCPHA 55
           MP    D   M  AL  +R         P +  +I+ D G VI  G     T +    HA
Sbjct: 1   MP---DDLHGMRLALEEARRA-YQCGEVP-IGAVILDDVGSVISSGYNLRETEHDATAHA 55

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+  A +        G T YVT+EPC      P CA  I+   I RVV    D    
Sbjct: 56  ELIAIRRACKALGRWRLTGMTLYVTIEPC------PMCAGAIVMSRISRVVYGSTDSKAG 109

Query: 111 VSGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
                        L+ +  +   ++  E    L  + 
Sbjct: 110 ACESLFNITGCPGLNHQPDVCAGVLAEECAALLKNFF 146


>gi|168187922|ref|ZP_02622557.1| tRNA-specific adenosine deaminase [Clostridium botulinum C str.
           Eklund]
 gi|169294234|gb|EDS76367.1| tRNA-specific adenosine deaminase [Clostridium botulinum C str.
           Eklund]
          Length = 147

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 17/123 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
            +FM  AL  ++  +        V  +IV++G +I               HAE+ A+++A
Sbjct: 3   KKFMDIALDEAKLAM--EKDEVPVGAVIVRNGEIIASAHNLRETLNDPTAHAEMLAIKKA 60

Query: 64  GEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
               +         YVTLEPC      P CA  II+  IR++ +   DP     G  L  
Sbjct: 61  SSVLKNWRLNECEMYVTLEPC------PMCAGAIIQSRIRKIYIGTIDPCAGCCGSVLNL 114

Query: 119 LSQ 121
              
Sbjct: 115 TEN 117


>gi|166712352|ref|ZP_02243559.1| hypothetical protein Xoryp_13070 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 170

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 65/164 (39%), Gaps = 22/164 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAE 56
           P ++ D  +M  AL  +          P V  LI+  +G V+G G      ++    HAE
Sbjct: 11  PHAAIDVHWMQHALHLAECAERDHDEIP-VGALILGAEGNVLGEGWNFNIASHDPSAHAE 69

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ +AG         G T YVTLEPC+       CA  +I   I RVV    DP    
Sbjct: 70  IVAMRDAGRRLSNHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGA 123

Query: 112 SGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
            G     L+      +  +   ++ +E  + L  Y   +  K  
Sbjct: 124 CGSVFDLLADPRHNHRVRVCGGVLAAEASLRLTNYFRAKRGKPP 167


>gi|167586888|ref|ZP_02379276.1| CMP/dCMP deaminase, zinc-binding protein [Burkholderia ubonensis
           Bu]
          Length = 191

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 59/155 (38%), Gaps = 22/155 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEV 57
           PVS+ D  FM   L  +       +    V  ++V+   VI RG     G      HAE+
Sbjct: 24  PVSARDTHFMR--LAQAAADEARAAGEVPVGAVLVRGDEVIARGFNHPIGGHDPSAHAEM 81

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL  A +  +     G   YVTLEPC        CA  I+   I RVV    DP     
Sbjct: 82  AALRMAAQHLQNYRMPGCELYVTLEPCLM------CAGAIMHARIARVVYGAADPKTGAC 135

Query: 113 GRGLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
           G  +       L+    +V  ++  E    L ++ 
Sbjct: 136 GSVIDAFANPQLNHHTEVVGGVLADECGAALKSFF 170


>gi|328952357|ref|YP_004369691.1| CMP/dCMP deaminase zinc-binding protein [Desulfobacca acetoxidans
           DSM 11109]
 gi|328452681|gb|AEB08510.1| CMP/dCMP deaminase zinc-binding protein [Desulfobacca acetoxidans
           DSM 11109]
          Length = 167

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 23/157 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----CPHAEV 57
             + D  +M  A+  ++    L      V  +++ K G +IG+G            HAE+
Sbjct: 16  QEAIDQAYMCLAIGEAKKASSLQEV--PVGAVVIDKAGKIIGQGHNQPIASHDPSAHAEI 73

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL +A   +R       T YVTLEPC        C   +++  +RR+V   DDP     
Sbjct: 74  VALRQASACSRNYRLPDCTMYVTLEPCIM------CIGAVLQARLRRLVYGADDPKGGAC 127

Query: 113 GRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLTR 144
               +      L+ +  +V  + E+E +  L  +  R
Sbjct: 128 VSLYRLPEDTRLNHRLEVVRGVCEAECRTLLQEFFRR 164


>gi|167574216|ref|ZP_02367090.1| riboflavin biosynthesis protein RibD [Burkholderia oklahomensis
           C6786]
          Length = 131

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 8/111 (7%)

Query: 250 ENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           ++     A A R +   I+         DL  +L +L  RG+  L VE G  +  S +  
Sbjct: 5   DSQSEARADALRARGAEIVPLANARGKVDLPAMLAMLGERGINELHVEAGHKLNGSLLRE 64

Query: 306 RLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCL 352
           R VD +++Y +  ++G         +                +  G D+ +
Sbjct: 65  RCVDELLVYLAPSLLGADAAAMFEVAAPPSLADRTRLAFHSVERVGDDLRI 115


>gi|330942469|gb|EGH45066.1| cytosine deaminase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 145

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 20/148 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGE 65
           FM AAL  ++  +GL      +  +IV  G +IGRG            H E+ ALE AG 
Sbjct: 4   FMQAALDEAQ--LGLKEGGIPIGSVIVHGGKIIGRGHNRRVQEGSATKHGEIDALENAGR 61

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +     R +  Y TL PC+       C+  I+  GIR+V++  ++  +       + L  
Sbjct: 62  QPASVYRDSVLYTTLSPCAM------CSGAILLYGIRKVIIGENESFMGEE----ELLRS 111

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           +G+ +D +   E    +  ++  + E  
Sbjct: 112 RGVQIDVLDNPECTHMMKDFIASKPELW 139


>gi|296139607|ref|YP_003646850.1| bifunctional deaminase-reductase domain protein [Tsukamurella
           paurometabola DSM 20162]
 gi|296027741|gb|ADG78511.1| bifunctional deaminase-reductase domain protein [Tsukamurella
           paurometabola DSM 20162]
          Length = 207

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 67/209 (32%), Gaps = 31/209 (14%)

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           Y     + R ++   +  S D     AG  S  + G   +     LR  +D +LVG  TV
Sbjct: 20  YRHPVADGRPYVRANMITSLDGA-ATAGATSGALGGAGDRRVFQALRQGADVVLVGAATV 78

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
                            SP   I+     +    ++       P++              
Sbjct: 79  RE--------EGYGTPQSPALAIV-TRGDVERTERLYPAGGPEPIVYSG----------- 118

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
                   + +  DL ++L  L  RG+  +L EGG  V  + + + LVD + L  +  V+
Sbjct: 119 --------HGESVDLHEVLADLHRRGLHRVLAEGGPGVLGALLAADLVDELCLTIAPRVV 170

Query: 321 GEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           G  G             +        G D
Sbjct: 171 GGHGGRIVAGPDLPADRWRPAHT--LGDD 197


>gi|255659416|ref|ZP_05404825.1| tRNA-specific adenosine deaminase [Mitsuokella multacida DSM 20544]
 gi|260848379|gb|EEX68386.1| tRNA-specific adenosine deaminase [Mitsuokella multacida DSM 20544]
          Length = 169

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 23/151 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALE 61
           DA +M  AL  ++    L      +  ++V ++G V+ RG            HAE+ A+ 
Sbjct: 4   DAYYMRLALEEAQKAYDL--EEVPIGAVLVDREGEVVARGHNMREVWHDATAHAEMIAIR 61

Query: 62  EAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           EA  +       G T YVT+EPC      P CA  I+   + RVV    D          
Sbjct: 62  EACAKEGRWRLSGLTLYVTIEPC------PMCAGAIVMSRVDRVVYGSTDARAGACESVF 115

Query: 117 QW-----LSQKGIIVDRMMESEGKIFLHAYL 142
                  L+ +  +   +++ E    +  + 
Sbjct: 116 NIPGCPALNHRPEMTAGVLQEECAGIMKRFF 146


>gi|320007797|gb|ADW02647.1| bifunctional deaminase-reductase domain protein [Streptomyces
           flavogriseus ATCC 33331]
          Length = 257

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 70/200 (35%), Gaps = 20/200 (10%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD---- 203
           +R  +   +  + D         S  I+          LR  +DA++VG  TV  +    
Sbjct: 37  RRPWLRANMVSTLDG-AAQHDGRSQGISCAADMRVFGTLRGLADAVVVGAETVRLEGYRP 95

Query: 204 ----DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
               +     R    Q  +P   ++     L     +  + L+  ++I           A
Sbjct: 96  ARAREAFAARREAEGQGPAPAVAVVSASLDLDFSLPLFVSPLVPTLVITGSAAPSDRVRA 155

Query: 260 FRKKNINIIYCD---CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
            R+    +++       D  + +  L  RG+  LL EGG  +   F+ + ++D + L  S
Sbjct: 156 ARESGAEVVFAGDGSAVDPARAVAELAARGLGRLLTEGGPRLLGQFVAAGVLDELCLTLS 215

Query: 317 QIVI--------GEGGIPSP 328
            ++         G   +P P
Sbjct: 216 PLLTAGDAQRIAGGPAVPVP 235


>gi|283477539|emb|CAY73455.1| tRNA-specific adenosine deaminase [Erwinia pyrifoliae DSM 12163]
          Length = 157

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 54/146 (36%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE- 65
           M  ALR +R           V  ++V DG  IG G     G      HAE+ AL + G+ 
Sbjct: 1   MRHALRLARRAW--DEGEVPVGAVLVLDGQAIGEGWNRPIGQHDPTAHAEMMALRQGGKV 58

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                    T YVTLEPC        CA  +I   + R+V    D     +G  L  L  
Sbjct: 59  IENYRLLDTTLYVTLEPC------VMCAGAMIHGRVGRLVYGARDAKTGAAGSLLDVLGH 112

Query: 122 KGI-----IVDRMMESEGKIFLHAYL 142
            G+     +   ++  E    L  + 
Sbjct: 113 AGMNHHVQVDCGVLRDECAAMLSDFF 138


>gi|95928326|ref|ZP_01311074.1| CMP/dCMP deaminase, zinc-binding [Desulfuromonas acetoxidans DSM
           684]
 gi|95135597|gb|EAT17248.1| CMP/dCMP deaminase, zinc-binding [Desulfuromonas acetoxidans DSM
           684]
          Length = 165

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 64/170 (37%), Gaps = 23/170 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           M  S  D  +M  AL  +R    L      V  ++V +G VI        T      HAE
Sbjct: 1   MNQS-QDEHYMRRALDLARQAEQL--GEVPVGAVVVLNGKVIAAAGNRRETWQDPTAHAE 57

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL EA +         AT YVTLEPC        C   II   I R+V    DP V  
Sbjct: 58  LIALREAAKRIDSWRLEEATLYVTLEPCIM------CMGGIILSRIPRLVFGARDPRVGA 111

Query: 112 SGRGL-----QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKI 156
            G        +  + +  + + ++  E    L  +  +  +K+    ++ 
Sbjct: 112 VGSVFDLADDERFNHRVEVSEGVLAEECSEILSNFFRQLRQKKKAARMRS 161


>gi|298571687|gb|ADI87839.1| hypothetical protein AKSOIL_0331 [uncultured bacterium Ak20-3]
          Length = 156

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 45/129 (34%), Gaps = 17/129 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57
           P S     FM   L  +       +    +  +IV DG +I               HAE+
Sbjct: 3   PESKNHEYFMKRCLELAHEAE--KNLEVPIGAVIVHDGKIISESSNKREKNHDATGHAEI 60

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+ +A ++ +         YVTLEPC        CA  +++  IR V     DP     
Sbjct: 61  LAIHDACQKLQSWRLSACDLYVTLEPCLM------CAGALVQARIRNVYFGAYDPKGGAL 114

Query: 113 GRGLQWLSQ 121
           G   +    
Sbjct: 115 GSLYKIHED 123


>gi|294792948|ref|ZP_06758094.1| LOW QUALITY PROTEIN: cytidine/deoxycytidylate deaminase family
           protein [Veillonella sp. 6_1_27]
 gi|294455893|gb|EFG24257.1| LOW QUALITY PROTEIN: cytidine/deoxycytidylate deaminase family
           protein [Veillonella sp. 6_1_27]
          Length = 164

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 56/156 (35%), Gaps = 22/156 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           M   + D  FM+ AL  +     L      +  ++V++  +I R             HAE
Sbjct: 13  MDERTRDEYFMAFALEEAHKAYDL--GEIPIGAILVQNNTIISRHHNRRELDHDATAHAE 70

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           V  + EA    +     G T YVT+EPC      P CA  II   I RVV    D     
Sbjct: 71  VLVIREACGVLKRWRLTGCTLYVTIEPC------PMCAGAIINSRIDRVVYGASDYKGGA 124

Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
                  LS  G+     +   ++  E    +  + 
Sbjct: 125 VESLFNVLSHPGLNHEPELASGVLGDECSQIMKDFF 160


>gi|224824536|ref|ZP_03697643.1| CMP/dCMP deaminase zinc-binding [Lutiella nitroferrum 2002]
 gi|224603029|gb|EEG09205.1| CMP/dCMP deaminase zinc-binding [Lutiella nitroferrum 2002]
          Length = 242

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/124 (30%), Positives = 54/124 (43%), Gaps = 17/124 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
            RFM+ A+R              V  ++VK+G +IGRG     T++    HAE+ AL EA
Sbjct: 95  QRFMAEAIRL--AKAAAAEGEVPVGAVVVKEGRIIGRGFNRPVTSHDPSAHAEMVALREA 152

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                     G   YVTLEPC      P C   I+   + RV+    DP +  +G  L  
Sbjct: 153 AATLGNYRLSGCDLYVTLEPC------PMCGGAILHSRLDRVIYGARDPKIGAAGSVLNL 206

Query: 119 LSQK 122
             ++
Sbjct: 207 FGER 210


>gi|153207852|ref|ZP_01946429.1| tRNA-specific adenosine deaminase [Coxiella burnetii 'MSU Goat
           Q177']
 gi|154706920|ref|YP_001424041.1| tRNA-specific adenosine deaminase [Coxiella burnetii Dugway
           5J108-111]
 gi|161830554|ref|YP_001596549.1| tRNA-specific adenosine deaminase [Coxiella burnetii RSA 331]
 gi|165918843|ref|ZP_02218929.1| tRNA-specific adenosine deaminase [Coxiella burnetii RSA 334]
 gi|212212896|ref|YP_002303832.1| tRNA-specific adenosine deaminase [Coxiella burnetii CbuG_Q212]
 gi|212219141|ref|YP_002305928.1| tRNA-specific adenosine deaminase [Coxiella burnetii CbuK_Q154]
 gi|215919009|ref|NP_819652.2| zinc-binding domain-containing protein [Coxiella burnetii RSA 493]
 gi|120576278|gb|EAX32902.1| tRNA-specific adenosine deaminase [Coxiella burnetii 'MSU Goat
           Q177']
 gi|154356206|gb|ABS77668.1| tRNA-specific adenosine deaminase [Coxiella burnetii Dugway
           5J108-111]
 gi|161762421|gb|ABX78063.1| tRNA-specific adenosine deaminase [Coxiella burnetii RSA 331]
 gi|165917475|gb|EDR36079.1| tRNA-specific adenosine deaminase [Coxiella burnetii RSA 334]
 gi|206583894|gb|AAO90166.2| tRNA-specific adenosine deaminase [Coxiella burnetii RSA 493]
 gi|212011306|gb|ACJ18687.1| tRNA-specific adenosine deaminase [Coxiella burnetii CbuG_Q212]
 gi|212013403|gb|ACJ20783.1| tRNA-specific adenosine deaminase [Coxiella burnetii CbuK_Q154]
          Length = 148

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 21/126 (16%)

Query: 7   DARFMSAALRFSRWHVGLTSTN--PSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
           D  FM  AL  ++      + N    +  ++VK+  ++G G            HAE+ AL
Sbjct: 3   DELFMHEALALAKKA----NENNEVPIGAVLVKENEIVGHGFNEPITLNDPTAHAEILAL 58

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A +          T YVTLEPC+       C   +I+  I+R+V    DP        
Sbjct: 59  RNAAKRVGNYRLVDTTLYVTLEPCAM------CVGAMIQARIKRLVFGAFDPRAGAVESV 112

Query: 116 LQWLSQ 121
            Q L++
Sbjct: 113 FQLLNE 118


>gi|332654745|ref|ZP_08420487.1| cytidine/deoxycytidylate deaminase family protein [Ruminococcaceae
           bacterium D16]
 gi|332516088|gb|EGJ45696.1| cytidine/deoxycytidylate deaminase family protein [Ruminococcaceae
           bacterium D16]
          Length = 152

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 41/102 (40%), Gaps = 15/102 (14%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            V C+IVKDG ++G G            HAE++A+ +A          G T YVTLEPC 
Sbjct: 24  PVGCVIVKDGKIVGEGRNRREEHGDATAHAELEAIRDACARLGSWRLHGCTLYVTLEPC- 82

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                P CA  II   I  V     D         L    ++
Sbjct: 83  -----PMCAGGIINSRIETVRYGARDEKAGCCSSVLNLFEER 119


>gi|213157131|ref|YP_002319176.1| tRNA-specific adenosine deaminase [Acinetobacter baumannii AB0057]
 gi|215483589|ref|YP_002325810.1| tRNA-specific adenosine deaminase [Acinetobacter baumannii
           AB307-0294]
 gi|239502187|ref|ZP_04661497.1| putative deaminase [Acinetobacter baumannii AB900]
 gi|301345934|ref|ZP_07226675.1| putative deaminase [Acinetobacter baumannii AB056]
 gi|213056291|gb|ACJ41193.1| tRNA-specific adenosine deaminase [Acinetobacter baumannii AB0057]
 gi|213987060|gb|ACJ57359.1| tRNA-specific adenosine deaminase [Acinetobacter baumannii
           AB307-0294]
          Length = 158

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEE 66
           M  A   +            V  +IV    +IG G  A  G      HAE+QA+  A E 
Sbjct: 1   MQLAYEQAELAAKQ--GEIPVGAVIVSQNKLIGAGFNAPIGLSDPTAHAEIQAIRAACES 58

Query: 67  AR------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +       AT YVTLEPC        C   ++   I+ VV    +P         Q L 
Sbjct: 59  LKNYRLPEDATLYVTLEPC------TMCVGALVHARIKHVVFGTTEPKAGSLVSARQLLE 112

Query: 121 Q 121
            
Sbjct: 113 N 113


>gi|327472530|gb|EGF17961.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK408]
          Length = 156

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ +   + L      + C++VK+G +IGRG  A         HAE+ A+EEA
Sbjct: 10  EAFMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEA 67

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I  VV    +     +G     
Sbjct: 68  NRHENSWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVVYGASNQKFGAAGSLYDI 121

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   +++ E    +  + 
Sbjct: 122 LTDERLNHRVEVETGVLQEECAQIMQEFF 150


>gi|325108107|ref|YP_004269175.1| tRNA-adenosine deaminase [Planctomyces brasiliensis DSM 5305]
 gi|324968375|gb|ADY59153.1| tRNA-adenosine deaminase [Planctomyces brasiliensis DSM 5305]
          Length = 162

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 52/152 (34%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
           +    +M  AL  +            V  +IV DG VI               HAE+ AL
Sbjct: 10  ALHEEYMRMALDEA--VAAFDEKEVPVGAIIVHDGHVIAAAHNQRETLNDPTAHAEMIAL 67

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A            T YVTLEPC      P CA  I++  + RVV    D         
Sbjct: 68  TQAATALESWRLEDCTLYVTLEPC------PMCAGAIVQARVPRVVYGTTDLKAGACHSL 121

Query: 116 LQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
                   L+ +  ++  ++  + K  L  + 
Sbjct: 122 YSITSDPRLNHRSEVLPGVLAPDCKAILQEFF 153


>gi|182682990|ref|YP_001834737.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           pneumoniae CGSP14]
 gi|303255537|ref|ZP_07341594.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           pneumoniae BS455]
 gi|303260656|ref|ZP_07346619.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           pneumoniae SP-BS293]
 gi|303260820|ref|ZP_07346769.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           pneumoniae SP14-BS292]
 gi|303263147|ref|ZP_07349070.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           pneumoniae BS397]
 gi|303267493|ref|ZP_07353343.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           pneumoniae BS457]
 gi|303269460|ref|ZP_07355227.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           pneumoniae BS458]
 gi|182628324|gb|ACB89272.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           pneumoniae CGSP14]
 gi|301800992|emb|CBW33654.1| putative deaminase [Streptococcus pneumoniae INV200]
 gi|302597498|gb|EFL64587.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           pneumoniae BS455]
 gi|302637657|gb|EFL68143.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           pneumoniae SP14-BS292]
 gi|302638186|gb|EFL68658.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           pneumoniae SP-BS293]
 gi|302640994|gb|EFL71374.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           pneumoniae BS458]
 gi|302642968|gb|EFL73265.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           pneumoniae BS457]
 gi|302646920|gb|EFL77144.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           pneumoniae BS397]
          Length = 155

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  ALR +   + L      + C+IVKDG +IGRG  A         HAE+ A+E+A
Sbjct: 9   EVFMREALREAE--IALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIEDA 66

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I  VV    +     +G     
Sbjct: 67  NLSEESWRLLDCTLFVTIEPC------VMCSGAIGLARIPNVVYGAKNQKFGAAGSLYDI 120

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   ++E +    +  + 
Sbjct: 121 LTDERLNHRVEVEIGILEDKCAAIMQDFF 149


>gi|332360091|gb|EGJ37905.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK1056]
          Length = 156

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ +   + L      + C++VK+G +IGRG  A         HAE+ A+EEA
Sbjct: 10  EAFMREALKEAE--IALAYDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEA 67

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I  VV    +     +G     
Sbjct: 68  NRHENSWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVVYGAANQKFGAAGSLYDI 121

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   +++ E    +  + 
Sbjct: 122 LTDERLNHRVEVETGVLQEECAQIMQDFF 150


>gi|328956593|ref|YP_004373979.1| tRNA specific adenosine deaminase [Carnobacterium sp. 17-4]
 gi|328672917|gb|AEB28963.1| tRNA specific adenosine deaminase [Carnobacterium sp. 17-4]
          Length = 174

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 59/156 (37%), Gaps = 22/156 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           M  +     FM  A++ +            +  ++V +G +IGRG            HAE
Sbjct: 1   MLTTEDKTYFMQEAIKEAHKAE--EKLEVPIGAIVVLNGKIIGRGHNRREESNDATTHAE 58

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A++EA           A  +VTLEPC      P C+  +I   ++ +     DP    
Sbjct: 59  MLAIQEANRYLGNWRLEEAQLFVTLEPC------PMCSGAMILSRVKELYYGASDPKGGT 112

Query: 112 SGRGLQWL-----SQKGIIVDRMMESEGKIFLHAYL 142
           +G  +  L     + +  I   ++E E    L  + 
Sbjct: 113 AGTLMNLLTDERFNHQVQIESSLLEQECGELLSTFF 148


>gi|148828084|ref|YP_001292837.1| hypothetical protein CGSHiGG_08090 [Haemophilus influenzae PittGG]
 gi|148719326|gb|ABR00454.1| hypothetical protein CGSHiGG_08090 [Haemophilus influenzae PittGG]
          Length = 125

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 46/123 (37%), Gaps = 18/123 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVT----AYGGCPHAEVQ 58
           S FD + M  AL  +     L      V  ++V D   +IG G            HAE+ 
Sbjct: 8   SEFDEKMMRYALELADKAEAL--GEIPVGAVLVDDARNIIGEGWNLSIVQSDPTAHAEII 65

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL    +  +      +T YVTLEPC        CA  I+   I+R+V    D      G
Sbjct: 66  ALRNGAKNIQNYRLLNSTLYVTLEPC------TMCAGAILHSRIKRLVFGASDYKTGAIG 119

Query: 114 RGL 116
              
Sbjct: 120 SRF 122


>gi|254431027|ref|ZP_05044730.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Cyanobium sp. PCC 7001]
 gi|197625480|gb|EDY38039.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Cyanobium sp. PCC 7001]
          Length = 225

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 67/218 (30%), Gaps = 28/218 (12%)

Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE--------LTC 209
           +S D  +     G   + G   +  +    A +D  L+G  T+              L  
Sbjct: 1   MSLDGRLAPPRGGPAQLGGAGDRRALEEALAWADGCLIGAETLRLHGSTCLIREGDLLEK 60

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
           R    +   P+ +++    +           L   ++          A   +       +
Sbjct: 61  RQQAGRAPQPVAVVVSRSGRFPSTLPFWSQPLQRWLL---------GAPPAQGAAGFHRH 111

Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI---- 325
                    L  L   G+  +++ GGAA+A S +   LVD + L    +++G   +    
Sbjct: 112 LPLAPWPDALAHLAAHGLERMVLLGGAALARSLLELGLVDELQLTVCPLLLGGEHLWLPA 171

Query: 326 ------PSPLEEGYLEKNFMCVRRDYF-GSDVCLEYIG 356
                 P PL  G     +         G +  L Y+ 
Sbjct: 172 ATQLQDPPPLAAGPGAAPWQLQTCRPLGGGECLLHYVR 209


>gi|148266168|ref|YP_001232874.1| CMP/dCMP deaminase, zinc-binding [Geobacter uraniireducens Rf4]
 gi|146399668|gb|ABQ28301.1| CMP/dCMP deaminase, zinc-binding protein [Geobacter uraniireducens
           Rf4]
          Length = 160

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 20/140 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGE 65
           FM AAL  ++   G       +  +IV +G +IGRG            H E+ ALE AG 
Sbjct: 19  FMQAALAEAK--QGQAEGGIPIGSVIVHNGRIIGRGHNRRVQKGSAILHGEMDALENAGR 76

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +     R  T Y TL PC+       C+  I+  GI RV+V  +   +       + L  
Sbjct: 77  QTAAVYRECTLYTTLSPCAM------CSGAILLYGIPRVIVGENRTFLGEE----ELLKS 126

Query: 122 KGIIVDRMMESEGKIFLHAY 141
           +G+ VD + E E    +  +
Sbjct: 127 RGVTVDVLQEQECISMMTDF 146


>gi|324995886|gb|EGC27797.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK678]
 gi|325695392|gb|EGD37292.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK150]
 gi|327488579|gb|EGF20379.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK1058]
 gi|328944679|gb|EGG38840.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK1087]
          Length = 156

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ +   + L      + C++VK+G +IGRG  A         HAE+ A+EEA
Sbjct: 10  EAFMREALKEAE--IALAYDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEA 67

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I  VV    +     +G     
Sbjct: 68  NRHENSWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVVYGAANQKFGAAGSLYDI 121

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   +++ E    +  + 
Sbjct: 122 LTDERLNHRVEVETGVLQEECAQIMQEFF 150


>gi|323465305|gb|ADX77458.1| tRNA-specific adenosine deaminase [Staphylococcus pseudintermedius
           ED99]
          Length = 157

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 46/123 (37%), Gaps = 17/123 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
             +MS AL  +R           +  ++VK+G +I R      T      HAE  A+E A
Sbjct: 5   QYYMSIALEEARKAA--KKGEVPIGAVVVKNGKIIARAHNLRETDQSPTAHAEHLAMERA 62

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                     G T YVTLEPC        CA  I+   +  VV    DP     G  +  
Sbjct: 63  AAQLGTWRLEGCTLYVTLEPC------VMCAGTIVMSRVDTVVFGAMDPKGGCVGSLMNL 116

Query: 119 LSQ 121
           +  
Sbjct: 117 VQD 119


>gi|256545480|ref|ZP_05472842.1| tRNA-specific adenosine deaminase [Anaerococcus vaginalis ATCC
           51170]
 gi|256398876|gb|EEU12491.1| tRNA-specific adenosine deaminase [Anaerococcus vaginalis ATCC
           51170]
          Length = 157

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 17/122 (13%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALE 61
            D  +M  A+  ++           + C+IVKD  +I R             HAE+ A++
Sbjct: 2   DDIFYMKEAINEAKLARL--EDEVPIGCVIVKDEKIIARSHNYTYKGKSALKHAEILAID 59

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           +A +          T YVT+EPCS       CA  II   I+R+V+ + D      G   
Sbjct: 60  KASKYVGDFRLEDCTMYVTMEPCSM------CAGAIINSRIKRLVIGLADVKRGACGSNT 113

Query: 117 QW 118
             
Sbjct: 114 NI 115


>gi|239983056|ref|ZP_04705580.1| hypothetical protein SalbJ_26719 [Streptomyces albus J1074]
 gi|291454887|ref|ZP_06594277.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptomyces
           albus J1074]
 gi|291357836|gb|EFE84738.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptomyces
           albus J1074]
          Length = 260

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 84/249 (33%), Gaps = 16/249 (6%)

Query: 125 IVDRMMESEGK-IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
           + D + + E     L             +   +  + D         S PI+G       
Sbjct: 7   VNDDVADREWTLAELADAYAYPETDGPWLRANMVSTLDG-AAQHEGRSQPISGSADMRIF 65

Query: 184 HLLRAQSDAILVGIGTVLAD--------DPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
             LR  +DA++VG  TV  +        +     R    Q  +P   ++     L  D  
Sbjct: 66  GTLRGLADAVVVGAETVRQEGYRPARAREAFARRRAAAGQAPAPAVAVVSASLALDFDLP 125

Query: 236 IIKTALLAPVIIVTENDDPV-LALAFRKKNINIIYCDC---RDLKKLLTILVGRGVTSLL 291
           +   A L P +++T    P     A     ++++        D  + +  L   G+T LL
Sbjct: 126 LFS-APLTPTLVLTGAAAPADRVRAAEAAGVHVLIAGTGAAVDPARAVAALAEHGLTRLL 184

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
            EGG  +   F+ + ++D + L  S ++  G+    +      L K F           +
Sbjct: 185 TEGGPRLLGQFVAAGVLDELCLTVSPMLTSGDAQRIAGGPSVALPKRFSPASVLEEAGFL 244

Query: 351 CLEYIGKNL 359
              Y   ++
Sbjct: 245 FTRYRRTDI 253


>gi|24378807|ref|NP_720762.1| putative deaminase [Streptococcus mutans UA159]
 gi|24376681|gb|AAN58068.1|AE014879_5 putative deaminase [Streptococcus mutans UA159]
          Length = 156

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 22/151 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
             FM  AL+ ++    L      + C+IVKDG +IG G  A         HAE+ A+ +A
Sbjct: 10  EFFMGEALKEAQLS--LQKEEIPIGCVIVKDGQIIGCGHNAREEENLAIMHAEIMAINQA 67

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I +V+    +     +G     
Sbjct: 68  NRTQESWRLLDCTLFVTIEPCIM------CSGAIGLARIPQVIYGAKNAKFGGAGSLYDI 121

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYLTR 144
                L+ +  +   ++E E    + ++   
Sbjct: 122 LTDERLNHRVEVERGILEKECAQMMQSFFRY 152


>gi|123441377|ref|YP_001005364.1| tRNA-specific adenosine deaminase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088338|emb|CAL11129.1| putative zinc-binding protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 161

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 55/146 (37%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEE 66
           M  AL  +            V  ++V D  VIG G            HAE+ AL + G+ 
Sbjct: 1   MQRALALALRAQ--VEGEVPVGAILVLDNQVIGEGWNRPIRDNDPTAHAEIMALRQGGQV 58

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            +      AT YVTLEPC        CA  ++   IRR+V   +D     +G  +  L  
Sbjct: 59  VQNYRLIDATLYVTLEPC------VMCAGAMVHSRIRRLVYGANDLKTGAAGSLVDILRH 112

Query: 122 KGI-----IVDRMMESEGKIFLHAYL 142
            G+     I   +M       L A+ 
Sbjct: 113 PGMNHQIEITAGVMADACAHQLSAFF 138


>gi|111221547|ref|YP_712341.1| hypothetical protein FRAAL2113 [Frankia alni ACN14a]
 gi|111149079|emb|CAJ60762.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase (Riboflavin
           biosynthesis protein ribD) [Frankia alni ACN14a]
          Length = 282

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 12/166 (7%)

Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD-------PELTCR--LNGLQEHS 218
           G  S P+ G   +    LLR  SD +LVG GTV  ++       PE   R    GL    
Sbjct: 85  GGRSGPLGGEADRRVFQLLRWLSDVVLVGAGTVRHENYGPVIVPPERRDRRQAAGLAAVP 144

Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC-RDLKK 277
           P+ +I      L   +++   A + P+++  +   P    A       ++  +   D   
Sbjct: 145 PIAVITATAG-LDPGARLFD-AEVRPIVLTCDAAPPAKRQALAAVAEVVLCGETTVDPAA 202

Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            L  L  RG+T +L EGG  +      + L+D + L  + ++ G G
Sbjct: 203 ALAALAERGMTRVLTEGGPLLHAQLAGAGLLDELCLTVAPMLAGPG 248


>gi|296131565|ref|YP_003638812.1| CMP/dCMP deaminase zinc-binding protein [Thermincola sp. JR]
 gi|296030143|gb|ADG80911.1| CMP/dCMP deaminase zinc-binding protein [Thermincola potens JR]
          Length = 155

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 23/151 (15%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
           ++M  AL  +R    L      +  +IV    V+ R             HAE+ A++EA 
Sbjct: 10  QYMQLALEEARAAFKL--GEVPIGAVIVIGDDVVARAHNMKEQWKDATAHAELVAIKEAV 67

Query: 65  EEA------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           ++       + A  YVT+EPC      P CA  +++  I +VV    DP     G  +  
Sbjct: 68  QKLGHWRYLKDAALYVTIEPC------PMCAGAMVQSRIEKVVYGAADPKAGAMGSLMNL 121

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYLTR 144
                L+ +  +V  ++E E    +  +  R
Sbjct: 122 AQDPRLNHRVEVVAGVLEEECSELMKEFFRR 152


>gi|325273807|ref|ZP_08139995.1| CMP/dCMP deaminase zinc-binding protein [Pseudomonas sp. TJI-51]
 gi|324101066|gb|EGB98724.1| CMP/dCMP deaminase zinc-binding protein [Pseudomonas sp. TJI-51]
          Length = 159

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 59/152 (38%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ-- 58
           S D  +M  AL  +     L      V  ++V+ G VIG+G            HAE+   
Sbjct: 9   SRDQEYMRLALSLAAEGAAL--GEVPVGAVLVQHGQVIGQGFNRPIIDSDPSAHAEMVAI 66

Query: 59  ---ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
              A   +     G+T YVTLEPCS       CA  I+   + RVV    +P   +    
Sbjct: 67  RAAAKAASNYRLPGSTLYVTLEPCSM------CAGLIVHSRVMRVVFGALEPKAGIVQSQ 120

Query: 116 LQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
            Q     +L+ + ++   ++  E    L  + 
Sbjct: 121 GQFFGQGFLNHRVMVEGGVLAQECGQILSDFF 152


>gi|119509403|ref|ZP_01628552.1| cytosine deaminase [Nodularia spumigena CCY9414]
 gi|119466017|gb|EAW46905.1| cytosine deaminase [Nodularia spumigena CCY9414]
          Length = 143

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 19/150 (12%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
            D  FM AA+  ++   G       +  ++VKDG +IGRG            HAE+  L 
Sbjct: 1   MDE-FMEAAIAQAK--QGRKEGGIPIGSVLVKDGKIIGRGHNKRVQDNDPVTHAEIDCLR 57

Query: 62  EAG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
            AG     RG T Y TL PC        CA  +++ GI++V+                ++
Sbjct: 58  NAGRVGSYRGTTLYSTLMPCY------LCAGAVVQFGIKKVIAGESRTFPGAK----DFM 107

Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
              G+ V  +   E +  +  ++    E  
Sbjct: 108 VSHGVEVIDLNLDECEQMMSEFIETNPEIW 137


>gi|254578372|ref|XP_002495172.1| ZYRO0B05082p [Zygosaccharomyces rouxii]
 gi|238938062|emb|CAR26239.1| ZYRO0B05082p [Zygosaccharomyces rouxii]
          Length = 611

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 58/137 (42%), Gaps = 12/137 (8%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEE---- 62
            ++M  AL  +    G T+T  SV  +++    VI  G +    G  HAE  ALE+    
Sbjct: 461 RKYMKLALEQAAK-CGPTTTAFSVGAVLINGTEVISTGYSRELPGNTHAEQCALEKYFSN 519

Query: 63  --AGEEARGATAYVTLEPCSHY-GRSPPCAQFIIEC--GIRRVVVCVDDPDVR-VSGRGL 116
             + E       Y T+EPCS     + PC Q II     I+ V V V +PD    +    
Sbjct: 520 TGSSELPEDTIIYTTMEPCSFRLSGNDPCVQRIINTNGKIKTVFVGVLEPDTFVKNNSSR 579

Query: 117 QWLSQKGIIVDRMMESE 133
             L + GI   ++   E
Sbjct: 580 SLLQRHGIDYIKIPGYE 596


>gi|149176635|ref|ZP_01855247.1| cytosine deaminase [Planctomyces maris DSM 8797]
 gi|148844514|gb|EDL58865.1| cytosine deaminase [Planctomyces maris DSM 8797]
          Length = 171

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 52/150 (34%), Gaps = 22/150 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
           R+M  A   +R           V  +IV    +I               HAE+ A+ +A 
Sbjct: 23  RWMRYAYDEARAA--FEEDEVPVGAVIVYQDRIIAAAHNQREMLSDPTAHAEMIAITQAA 80

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW- 118
           E            YVTLEPC      P CA  I++  +  V+    D          Q  
Sbjct: 81  ESLGSWRLSDCVLYVTLEPC------PMCAGAIVQSRLPLVIYGTRDEKAGACHSLFQIT 134

Query: 119 ----LSQKGIIVDRMMESEGKIFLHAYLTR 144
               L+ +  ++  +M+ E +  L  +  R
Sbjct: 135 SDARLNHQSTVISGVMQEECRGILQEFFRR 164


>gi|313848259|emb|CBY17260.1| putative cytidine/deoxycytidylate deaminase family protein
           [Chlamydophila psittaci RD1]
 gi|328914938|gb|AEB55771.1| cytidine/deoxycytidylate deaminase family protein [Chlamydophila
           psittaci 6BC]
          Length = 157

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 51/147 (34%), Gaps = 21/147 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
             D  FM+ AL+ +R           V C+IVKD  +I RG            HAE+  +
Sbjct: 4   EKDIFFMNQALKEARQA--YDEDEVPVGCVIVKDNKIIARGHNTTEKLQDPTAHAEILCI 61

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A +            Y TLEPC        CA  I +  IRR+V    D  +   G  
Sbjct: 62  GAAAQYLENWRLVDTVLYCTLEPCLM------CAGAIQQARIRRIVWAAPDLRLGAGGSW 115

Query: 116 LQWLSQ----KGIIVDRMMESEGKIFL 138
           +    +      +     +  E    L
Sbjct: 116 INVFKEKHPFHQVECCSGICREDAEQL 142


>gi|313204491|ref|YP_004043148.1| cmp/dcmp deaminase zinc-binding protein [Paludibacter
           propionicigenes WB4]
 gi|312443807|gb|ADQ80163.1| CMP/dCMP deaminase zinc-binding protein [Paludibacter
           propionicigenes WB4]
          Length = 158

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 59/150 (39%), Gaps = 17/150 (11%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQA 59
           ++ D  FM  AL  ++   G     P +  +IV  G +I RG     T      HAE+QA
Sbjct: 14  TNPDEYFMRQALMEAQRA-GERDEVP-IGAVIVCQGRIIARGHNLTETLTDVTAHAEMQA 71

Query: 60  LEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           +  A     G+     + YVT+EPC        CA  +    I RVV    D        
Sbjct: 72  ITAAAQFLGGKYLIDCSLYVTVEPC------VMCAGALGWSQISRVVYGASDEKRGFVRF 125

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
               L  K  IV  ++E++    +  +  R
Sbjct: 126 APNALHPKTEIVSGILEADCSKLVKKFFKR 155


>gi|193077204|gb|ABO11996.2| putative deaminase [Acinetobacter baumannii ATCC 17978]
          Length = 158

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEE 66
           M  A   +            V  +IV    +IG G  A  G      HAE+QA+  A E 
Sbjct: 1   MQLAYEQAELAA--EQGEIPVGAVIVSQNKLIGAGFNAPIGLSDPTAHAEIQAIRAACES 58

Query: 67  AR------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +       AT YVTLEPC        C   ++   I+ VV    +P         Q L 
Sbjct: 59  LKNYRLPEDATLYVTLEPC------TMCVGALVHARIKHVVFGTTEPKAGSLVSARQLLE 112

Query: 121 Q 121
            
Sbjct: 113 N 113


>gi|262372477|ref|ZP_06065756.1| ComE operon protein 2 [Acinetobacter junii SH205]
 gi|262312502|gb|EEY93587.1| ComE operon protein 2 [Acinetobacter junii SH205]
          Length = 167

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 47/129 (36%), Gaps = 19/129 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           M V + D  +M  A   +   +  +     V  +IV    +IG G  A         HAE
Sbjct: 1   MTV-NKDEYWMQFAYEQA--AIAASQGEIPVGAVIVSQDKIIGSGYNAPIQLSDPTAHAE 57

Query: 57  VQALEEAGEEAR------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           +QAL  A            A  YVTLEPC        C   +I   I++V+    +P   
Sbjct: 58  IQALRSACRAIENYRLPDDAVLYVTLEPC------TMCVGALIHARIQKVIFATTEPKAG 111

Query: 111 VSGRGLQWL 119
                 Q L
Sbjct: 112 SVVSARQLL 120


>gi|290581189|ref|YP_003485581.1| putative deaminase [Streptococcus mutans NN2025]
 gi|254998088|dbj|BAH88689.1| putative deaminase [Streptococcus mutans NN2025]
          Length = 156

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 22/151 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
             FM  AL+ ++    L      + C+IVKDG +IG G  A         HAE+ A+ +A
Sbjct: 10  EFFMGEALKEAQLS--LQKEEIPIGCVIVKDGQIIGCGHNAREEENLAIMHAEIMAINQA 67

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I +V+    +     +G     
Sbjct: 68  NRTQESWRLLDCTLFVTIEPCIM------CSGAIGLARIPQVIYGAKNAKFGGAGSLYDI 121

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYLTR 144
                L+ +  +   ++E E    + ++   
Sbjct: 122 LTDERLNHRVEVERGILEKECAQMMQSFFRY 152


>gi|260886684|ref|ZP_05897947.1| tRNA-specific adenosine deaminase [Selenomonas sputigena ATCC
           35185]
 gi|330839487|ref|YP_004414067.1| CMP/dCMP deaminase zinc-binding protein [Selenomonas sputigena ATCC
           35185]
 gi|260863536|gb|EEX78036.1| tRNA-specific adenosine deaminase [Selenomonas sputigena ATCC
           35185]
 gi|329747251|gb|AEC00608.1| CMP/dCMP deaminase zinc-binding protein [Selenomonas sputigena ATCC
           35185]
          Length = 168

 Score = 81.1 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 23/171 (13%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----TAYGGCPHAEVQAL 60
            D  FM  AL+ ++         P +  ++V  DG V+ R      T + G  HAE+ AL
Sbjct: 3   DDIAFMKEALKEAQEA-FQAGEVP-IGAVLVDADGTVVARAHNMRETWHDGTAHAEIIAL 60

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA  +       G T YVT+EPC      P CA  ++   + RVV    D         
Sbjct: 61  QEAARKLGRWRLSGLTLYVTIEPC------PMCAGALVMSRVDRVVYGATDAKAGACESL 114

Query: 116 LQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
              +    +     +   ++E E +  +  +  ++ +K S +      + D
Sbjct: 115 FNIVRHPALNHQLEMRAGVLEDECRAIMKRFFGQRRKKSSALKKCANQAFD 165


>gi|325126599|gb|ADY85929.1| RibD protein [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 107

 Score = 81.1 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 1/104 (0%)

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           E+   +T YVTLEPC HYG+ PPC Q II+ GI+RVVV   DP   V+G+G+  L Q G+
Sbjct: 4   EQLSNSTIYVTLEPCCHYGKQPPCTQLIIDSGIKRVVVGATDPHSLVTGKGIAALRQAGL 63

Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA 167
            +   ++  E       Y         ++TLK A++ D+M+   
Sbjct: 64  EVSTGLLAKEASQLNDHYNYFYQTGLPYVTLKQAMTLDHMLATK 107


>gi|78213851|ref|YP_382630.1| putative riboflavin-specific deaminase [Synechococcus sp. CC9605]
 gi|78198310|gb|ABB36075.1| putative riboflavin-specific deaminase [Synechococcus sp. CC9605]
          Length = 230

 Score = 81.1 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 73/187 (39%), Gaps = 18/187 (9%)

Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203
           R    R  + L +A+S D  +     G+  + G   +  +    A  DA L+G GT+ A 
Sbjct: 9   RPTPTRPFVRLVLAISLDGRLAPPEGGAAQLGGEGDRRALEHALAWGDACLIGAGTLRAH 68

Query: 204 -------DPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
                  +P+L   R +  +   P  +++    + S   +     L   ++      DPV
Sbjct: 69  QCTCLIRNPQLLEQRRSEGRTEQPAAVVVSRSPEFSSTWRFFDQPLQRWLLA----PDPV 124

Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
                  +  +  +       + L +L   G+  L++ GGA ++   + +  VD++ L  
Sbjct: 125 ------DQGFDRWFPLAPTWPERLEVLGAAGIQRLVLLGGARLSADLLQADCVDALQLTL 178

Query: 316 SQIVIGE 322
              ++G 
Sbjct: 179 VPQLLGG 185


>gi|332358122|gb|EGJ35954.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK49]
          Length = 156

 Score = 81.1 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 22/155 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ +   + L      + C++VK+G +IGRG  A         HAE+ A+EEA
Sbjct: 10  EAFMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEA 67

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I  VV    +     +G     
Sbjct: 68  NRHENSWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVVYGAANQKFGAAGSLYDI 121

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
                L+ +  +   +++ E    +  +   + +K
Sbjct: 122 LTDERLNHRVEVETGVLQEECAQIMQDFFRNRRQK 156


>gi|332140490|ref|YP_004426228.1| cytidine/deoxycytidylate deaminase family protein [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327550512|gb|AEA97230.1| cytidine/deoxycytidylate deaminase family protein [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 223

 Score = 81.1 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 17/122 (13%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAG 64
           R+M  AL  +      +     V   +V +G +IG G       +    HAE++A+++A 
Sbjct: 61  RWMKHALALADSAE--SIGEVPVGACVVLNGELIGEGYNTPISDHDPSAHAELRAVKQAA 118

Query: 65  EEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
            + +      AT YVTLEPCS       CA  ++   ++RVV    D     +G  +  L
Sbjct: 119 SKVQNYRLIDATLYVTLEPCSM------CAGMLVHARVKRVVFGAKDAKTGAAGSVMNLL 172

Query: 120 SQ 121
             
Sbjct: 173 QH 174


>gi|257464722|ref|ZP_05629093.1| tRNA-adenosine deaminase [Actinobacillus minor 202]
 gi|257450382|gb|EEV24425.1| tRNA-adenosine deaminase [Actinobacillus minor 202]
          Length = 150

 Score = 81.1 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 58/154 (37%), Gaps = 23/154 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           M  AL  +          P V  ++V K G ++G G            HAE+QA+  AG+
Sbjct: 1   MQYALSLADKAE-QEGEIP-VGAVLVDKSGKIVGEGWNRSIILSDPTAHAEIQAIRMAGQ 58

Query: 66  EAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             +       T YVTLEPC      P CA  I+   I R+V    D      G       
Sbjct: 59  HLQNYRLLDTTLYVTLEPC------PMCAGAILHSRIGRLVFGASDYKTGAIGSRFHLFE 112

Query: 121 QKGI-----IVDRMMESEGKIFLHAYLTRQVEKR 149
              +     I   +M  E    + A+  ++ +++
Sbjct: 113 DYKMNHFLQIRGGVMRDECSQKISAFFKKRRQEQ 146


>gi|227504965|ref|ZP_03935014.1| bifunctional deaminase-reductase domain protein [Corynebacterium
           striatum ATCC 6940]
 gi|227198474|gb|EEI78522.1| bifunctional deaminase-reductase domain protein [Corynebacterium
           striatum ATCC 6940]
          Length = 225

 Score = 81.1 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 62/165 (37%), Gaps = 12/165 (7%)

Query: 165 GMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP--MRI 222
                 S  +           LR   D ++VG GTV A+D          +  SP   RI
Sbjct: 30  ATIDGTSDAMGNATDAALFQGLRKWGDVVVVGAGTVKAED---------YEGSSPGAARI 80

Query: 223 -ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
            ++     L+++SK+ +      ++   EN     A         ++      ++ ++  
Sbjct: 81  AVMSYSLDLNVESKLFQVGTPPLILTPDENVGTAAAQRLESAGATVLGTGDGSIQSVVAA 140

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           L  +G T ++ EGG  V  +FI + LVD + L     +      P
Sbjct: 141 LHAQGWTRIVCEGGPGVYSAFIAAGLVDKLYLTLDPHLTSSVAQP 185


>gi|213964528|ref|ZP_03392728.1| riboflavin biosynthesis protein RibD C- domain protein
           [Corynebacterium amycolatum SK46]
 gi|213952721|gb|EEB64103.1| riboflavin biosynthesis protein RibD C- domain protein
           [Corynebacterium amycolatum SK46]
          Length = 256

 Score = 81.1 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 65/186 (34%), Gaps = 22/186 (11%)

Query: 186 LRAQSDAILVGIGTVLADD------PEL--TCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
           LRA +D + VG GT+ A+       PE   T R    +        L     L + S   
Sbjct: 57  LRALADVVFVGTGTIAAEGYGPVEIPEYLETVRQKLGRSKHVAMSTLSRSLDLDIKSDFF 116

Query: 238 KTALLAPVIIVTENDD-----------PVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286
             A + P II T+ +D              A         ++      +K  L  L   G
Sbjct: 117 ANAEVNPPIIFTQTEDAFNDEEAKTAHKDKARKMESAGARVVKLPDPSVKAALAWLAEHG 176

Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
              ++VEGG  +      +  VD + L  S + +G G  P    E   ++++       F
Sbjct: 177 YRDIVVEGGPTMYREAFENGCVDELFLTLSPMWVGNG--PLTFGETAPDEDWNSTNPQAF 234

Query: 347 G-SDVC 351
              D+ 
Sbjct: 235 EVRDIL 240


>gi|110833682|ref|YP_692541.1| cytidine/deoxycytidylate deaminase family protein [Alcanivorax
           borkumensis SK2]
 gi|110646793|emb|CAL16269.1| cytidine/deoxycytidylate deaminase family protein [Alcanivorax
           borkumensis SK2]
          Length = 152

 Score = 81.1 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 55/151 (36%), Gaps = 22/151 (14%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
            D  +M  AL  +R           V  L+V+ G ++G+G            HAE+ A+ 
Sbjct: 2   DDQDWMQQALMLARQAA--DQGEVPVGALVVRGGQLLGQGYNQPITANDPSAHAEIIAMR 59

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A          G T YVTLEPC        C   ++   I R+V    +P   V    L
Sbjct: 60  SASLAEKNYRLSGCTLYVTLEPC------TMCFGAMVHARIGRLVYGASEPRAGVCESQL 113

Query: 117 QW-----LSQKGIIVDRMMESEGKIFLHAYL 142
           Q       + +  +   ++  E  + L  + 
Sbjct: 114 QLPSVDFYNHRVEVEKGVLAEESAMLLKRFF 144


>gi|311898589|dbj|BAJ30997.1| putative truncated riboflavin-specific deaminase/reductase
           [Kitasatospora setae KM-6054]
          Length = 100

 Score = 81.1 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           +   D  D   +L  L  RGV  L+VEGG  +   F++  L D I L  + +++G+ G P
Sbjct: 2   VSTGDTVDFGLMLEDLAARGVQRLMVEGGGQIHTQFLSLGLADEIHLAVAPLLVGDAGAP 61

Query: 327 SPL----EEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
             +      G        +  +  G  V L Y  K 
Sbjct: 62  RFVYPAEFPGGSTHRMKLLGTETVGDVVLLRYAPKE 97


>gi|319891528|ref|YP_004148403.1| tRNA-specific adenosine-34 deaminase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161224|gb|ADV04767.1| tRNA-specific adenosine-34 deaminase [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 157

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 46/123 (37%), Gaps = 17/123 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
             +MS AL  ++           +  ++VK+G +I R      T      HAE  A+E A
Sbjct: 5   QYYMSIALEEAKKAA--KKGEVPIGAVVVKNGKIIARAHNLRETDQSPTAHAEHLAMERA 62

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                     G T YVTLEPC        CA  I+   +  VV    DP     G  +  
Sbjct: 63  AAQLGTWRLEGCTLYVTLEPC------VMCAGTIVMSRVDTVVFGAMDPKGGCVGSLMNL 116

Query: 119 LSQ 121
           +  
Sbjct: 117 VQD 119


>gi|327463521|gb|EGF09840.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK1057]
 gi|327467872|gb|EGF13362.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK330]
          Length = 156

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ +   + L      + C++VK+G +IGRG  A         HAE+ A+EEA
Sbjct: 10  EAFMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEA 67

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I  VV    +     +G     
Sbjct: 68  NRHENSWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVVYGAANQKFGAAGSLYDI 121

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   +++ E    +  + 
Sbjct: 122 LTDERLNHRVEVETGVLQEECAQIMQEFF 150


>gi|163753582|ref|ZP_02160705.1| putative cytosine/adenosine deaminase [Kordia algicida OT-1]
 gi|161325796|gb|EDP97122.1| putative cytosine/adenosine deaminase [Kordia algicida OT-1]
          Length = 151

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 55/146 (37%), Gaps = 18/146 (12%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
            D  FM  AL+ +            V  +IV D  VI RG     T      HAE+QA+ 
Sbjct: 8   DDNYFMKKALQEAEMA--FEKGEVPVGAVIVIDNRVIARGHNLTETLNDVTAHAEMQAIT 65

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A     G+  +  T YVTLEPC        CA  +    I  +V    D + R   +  
Sbjct: 66  AAANFLGGKYLKRCTLYVTLEPC------QMCAGALYWSQISNIVYGARDEE-RGCIKLN 118

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYL 142
             L  K ++   ++  E    L  + 
Sbjct: 119 TKLHPKTVMKGGVLAEEASQLLKRFF 144


>gi|28895070|ref|NP_801420.1| hypothetical protein SPs0158 [Streptococcus pyogenes SSI-1]
 gi|28810315|dbj|BAC63253.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
          Length = 160

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 22/167 (13%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE- 65
           M  AL+ +   +        + C+IVKDG +IGRG  A         HAE+ A+ EA   
Sbjct: 1   MQEALKEAEKSLQKAE--IPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAH 58

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW--- 118
                    T +VT+EPC        C+  I    I  V+    +     +    Q    
Sbjct: 59  EGNWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVIYGASNQKFGGADSLYQILTD 112

Query: 119 --LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163
             L+ +  +   ++ ++    +  +  +  E++      I    D  
Sbjct: 113 ERLNHRVQVERGLLAADCANIMQTFFRQGRERKKIAKHLIKEQSDPF 159


>gi|124024890|ref|YP_001014006.1| RibD/RibG domain-containing protein [Prochlorococcus marinus str.
           NATL1A]
 gi|123959958|gb|ABM74741.1| RibD/ribG C-terminal domain [Prochlorococcus marinus str. NATL1A]
          Length = 225

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 86/228 (37%), Gaps = 19/228 (8%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL----- 201
            K+  + L +A S D  I     G   +     +  +    A SD IL+G  T+      
Sbjct: 1   MKKKWVKLVLASSIDGRIAYPEGGKTQLGQSGDRLVLEESLAWSDGILMGGQTLRDHQSI 60

Query: 202 ---ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
               +   L  R +  +   P+ +I         +    +  L   ++ + +  + ++  
Sbjct: 61  CLIKNKSLLKKRTSKGKNEQPIALIASNQIDFPENWLFFQQPLQRWLLQMQDKKNEIMLP 120

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
               K IN+        +  L  L  +G+  +++ GGA +  +F+   L+D + +  +  
Sbjct: 121 DGFDKRINLRIT----WRDSLDDLYQKGIAKIVLLGGANLISAFLLENLIDELQITITPH 176

Query: 319 VIGEG--GIPSPLEEGYL----EKNFMCVRRDYFGSD-VCLEYIGKNL 359
           +IG     + S L+        + N++       G++ + + Y   +L
Sbjct: 177 LIGGDYCWVSSELKNLNTIMNKKNNWILKESKKLGNNELLIRYFRNHL 224


>gi|46446282|ref|YP_007647.1| hypothetical protein pc0648 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399923|emb|CAF23372.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 166

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 49/127 (38%), Gaps = 19/127 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
           + D RFM  AL+ +       +    V  ++VKD  +I RG            HAE+  L
Sbjct: 11  NDDERFMLEALKEAWKA--FKADEVPVGAVLVKDKHIIARGFNQVEMLKDATAHAEMLCL 68

Query: 61  EEAGEEA------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
             AGE A         T Y T+EPCS       CA  +    I+ +V    D     +G 
Sbjct: 69  T-AGESALDNWRLSETTLYCTVEPCSM------CAGAMFLTRIKTLVWGAPDLRHGANGS 121

Query: 115 GLQWLSQ 121
            +    +
Sbjct: 122 WVNLFDE 128


>gi|127512231|ref|YP_001093428.1| CMP/dCMP deaminase, zinc-binding [Shewanella loihica PV-4]
 gi|126637526|gb|ABO23169.1| tRNA-adenosine deaminase [Shewanella loihica PV-4]
          Length = 178

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 58/156 (37%), Gaps = 22/156 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
           D  +M  A+  +            V  L+VKD  VI  G       +    HAE++ +  
Sbjct: 18  DEAYMRQAMALAAQAELR--GEVPVGALLVKDDSVIATGYNLSICRHDASAHAEMECIRA 75

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AG+          T YVTLEPC+       CA  ++   I R+V    D     +G  + 
Sbjct: 76  AGQVMENYRLLDTTLYVTLEPCAM------CAGAMVHARIGRLVFGAADLKTGAAGSVVD 129

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEK 148
            +          +   ++  +    L A+  R+ ++
Sbjct: 130 LVRSSAFNHQLEVTAGVLAEDCGEQLSAFFRRRRQE 165


>gi|319779703|ref|YP_004130616.1| tRNA-specific adenosine-34 deaminase [Taylorella equigenitalis
           MCE9]
 gi|317109727|gb|ADU92473.1| tRNA-specific adenosine-34 deaminase [Taylorella equigenitalis
           MCE9]
          Length = 162

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 60/158 (37%), Gaps = 24/158 (15%)

Query: 1   MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----CPH 54
           MP++  D  +FM  AL+ +       S    V  ++V  +  ++G+G     G      H
Sbjct: 1   MPLNIADNKKFMQLALQNAEKA--YKSGEVPVGAVLVGPNQDILGQGYNQVIGTSDSTAH 58

Query: 55  AEVQALEEAGEEAR------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           AE+ AL EA    +      G T +VTLEPC        C   +I   +  +V+   DP 
Sbjct: 59  AEIVALREANLSIQNYRLPSGCTMFVTLEPCIM------CLGALIHARLEHLVIGSRDPK 112

Query: 109 VRVSGRGLQW----LSQKGIIVDRMMESEGKIFLHAYL 142
               G  L      L+        ++  E    L  + 
Sbjct: 113 TGACGGRLSIHASDLNHHMHTTVGVLSEECSKILKDFF 150


>gi|332365640|gb|EGJ43399.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK355]
          Length = 156

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 22/155 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ +   + L      + C++VK+G +IGRG  A         HAE+ A+EEA
Sbjct: 10  EDFMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEA 67

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I  VV    +     +G     
Sbjct: 68  NRHENSWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVVYGAANQKFGAAGSLYDI 121

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
                L+ +  +   +++ E    +  +   + +K
Sbjct: 122 LTDERLNHRVEVETGVLQEECAQIMQDFFRNRRQK 156


>gi|306826204|ref|ZP_07459538.1| tRNA-specific adenosine deaminase [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304431480|gb|EFM34462.1| tRNA-specific adenosine deaminase [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 155

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 56/149 (37%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  ALR +   + L      + C+IVKD  +IGRG  A         HAE+ A+E A
Sbjct: 9   EAFMREALREAE--IALEHDEIPIGCVIVKDREIIGRGHNAREELQRAVMHAEIMAIENA 66

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I  VV    +     +G     
Sbjct: 67  NVSEESWRLLDCTLFVTIEPC------VMCSGAIGLARIPNVVYGAKNQKFGAAGSLYDI 120

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   ++E +    +  + 
Sbjct: 121 LTDERLNHRVEVETGILEDDCAAIMQDFF 149


>gi|227545162|ref|ZP_03975211.1| tRNA-adenosine deaminase [Lactobacillus reuteri CF48-3A]
 gi|300909163|ref|ZP_07126624.1| tRNA-specific adenosine deaminase [Lactobacillus reuteri SD2112]
 gi|227184845|gb|EEI64916.1| tRNA-adenosine deaminase [Lactobacillus reuteri CF48-3A]
 gi|300893028|gb|EFK86387.1| tRNA-specific adenosine deaminase [Lactobacillus reuteri SD2112]
          Length = 170

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 52/149 (34%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
            +FM  A+  ++    L      +  ++V +G VIGRG            HAE+ A+ EA
Sbjct: 12  QKFMKMAIAEAKQARILDEV--PIGAIVVHEGQVIGRGHNMREKFQDVTYHAEMLAIMEA 69

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                         YVTLEPC        C+  II   I+ V     DP           
Sbjct: 70  CTNLGSWRLEDCDLYVTLEPCIM------CSGAIINARIKNVYYGAADPKAGAVDSLYHL 123

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   ++  E    L  + 
Sbjct: 124 LNDSRLNHQVNVHSGILGDECSQMLKNFF 152


>gi|206560408|ref|YP_002231172.1| putative deaminase [Burkholderia cenocepacia J2315]
 gi|198036449|emb|CAR52345.1| putative deaminase [Burkholderia cenocepacia J2315]
          Length = 198

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 59/155 (38%), Gaps = 22/155 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEV 57
           P+S+ D  FM   L  +       +    V  ++V+   VI RG     G      HAE+
Sbjct: 31  PISARDLHFMR--LAQAAAEEARAAGEVPVGAVLVRGDEVIARGFNHPIGGHDPSAHAEM 88

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL  A ++ +     G   YVTLEPC        CA  I+   I RVV    DP     
Sbjct: 89  AALRMAAQQLQNYRMPGCELYVTLEPCLM------CAGAIMHARIARVVYGAADPKTGAC 142

Query: 113 GRGLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
           G  +       L+    +   ++  E    L ++ 
Sbjct: 143 GSVIDAFANPQLNHHTEVTGGVLADECGAALKSFF 177


>gi|72383310|ref|YP_292665.1| pyrimidine reductase [Prochlorococcus marinus str. NATL2A]
 gi|72003160|gb|AAZ58962.1| pyrimidine reductase [Prochlorococcus marinus str. NATL2A]
          Length = 225

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 84/228 (36%), Gaps = 19/228 (8%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL----- 201
            K+  + L +A S D  I     G   +     +  +    A SD IL+G  T+      
Sbjct: 1   MKKKWVKLVLASSIDGRIAYPEGGKTQLGQSGDRLVLEESLAWSDGILMGGQTLRDHQSI 60

Query: 202 ---ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
               +   L  R +  +   P+ +I         +    +  L   ++ + +  + ++  
Sbjct: 61  CLIKNKSLLKKRTSEGKNEQPIALIASNQIDFPENWLFFQQPLQRWLLQMQDKKNEIMLP 120

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
               K IN+        +  L  L  +G+  +++ GGA +  +F+   L+D + +  +  
Sbjct: 121 DGFDKRINL----KITWRDSLDDLYQKGIAKIVLLGGANLISAFLLENLIDELQITITPH 176

Query: 319 VIGEG--GIPSPLEEGYLEKN----FMCVRRDYFGSD-VCLEYIGKNL 359
           +IG     + S L       N    ++       G++ + + Y   +L
Sbjct: 177 LIGGDYCWVSSELRNLSTIMNKKNKWILKESQKLGNNELLIRYFRNHL 224


>gi|163791639|ref|ZP_02186036.1| cytidine/deoxycytidylate deaminase family protein [Carnobacterium
           sp. AT7]
 gi|159873088|gb|EDP67195.1| cytidine/deoxycytidylate deaminase family protein [Carnobacterium
           sp. AT7]
          Length = 174

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 56/148 (37%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
            FM  A++ +            +  ++V +G +IGRG            HAE+ A++EA 
Sbjct: 9   YFMQEAIKEAHKAK--EKLEVPIGAVVVLNGKIIGRGHNIREESNDATTHAEMLAIQEAN 66

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                        +VTLEPC      P C+  +I   I+ +     DP    +G  +  L
Sbjct: 67  RYLGNWRLEETQLFVTLEPC------PMCSGAMILSRIKELYYGASDPKGGTAGTLMNLL 120

Query: 120 -----SQKGIIVDRMMESEGKIFLHAYL 142
                + +  I   ++E E    L  + 
Sbjct: 121 DDNRFNHQVQIEKGLLEEECSDLLSNFF 148


>gi|42521730|ref|NP_967110.1| cytidine/deoxycytidylate deaminase family protein [Bdellovibrio
           bacteriovorus HD100]
 gi|39574260|emb|CAE77764.1| cytidine/deoxycytidylate deaminase family protein [Bdellovibrio
           bacteriovorus HD100]
          Length = 155

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 46/123 (37%), Gaps = 16/123 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  A+  SR ++   +  P    +IVKDG +IG G            HAEV A+ +A
Sbjct: 3   KEFMLRAIELSRNNMRAGAGGP-FGAVIVKDGKIIGEGWNKVTSSNDPTAHAEVSAIRDA 61

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
             +       GA  Y + EPC      P C   I    I ++       D         +
Sbjct: 62  CSKISNFELAGAEIYTSCEPC------PMCLSAIYWARIEKIYYGNTRKDAAEINFDDDF 115

Query: 119 LSQ 121
           L Q
Sbjct: 116 LYQ 118


>gi|332308193|ref|YP_004436044.1| CMP/dCMP deaminase zinc-binding protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175522|gb|AEE24776.1| CMP/dCMP deaminase zinc-binding protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 145

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 20/141 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQALEEAG 64
           +FM AA+  ++   GL      +  ++V    +IGRG       G P  H E+ ALE AG
Sbjct: 3   KFMQAAIDEAK--QGLAEGGIPIGSVLVYQDEIIGRGHNRRVQSGSPILHGEMDALENAG 60

Query: 65  EEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            +     + +T Y TL PCS    +      I+  GI +VV+  +             L 
Sbjct: 61  RQPASVYKASTLYTTLSPCSMCSGT------ILLYGIPKVVIGENKTFQGEES----LLK 110

Query: 121 QKGIIVDRMMESEGKIFLHAY 141
            +G+ +D +   E    ++ +
Sbjct: 111 SRGVNIDLVHSQECIDLMNDF 131


>gi|282879130|ref|ZP_06287889.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella buccalis ATCC 35310]
 gi|281298772|gb|EFA91182.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella buccalis ATCC 35310]
          Length = 181

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 52/146 (35%), Gaps = 17/146 (11%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
            D +FM  AL  +  H         +  +I   G +I R      T      HAE+ A+ 
Sbjct: 40  QDEQFMQKALAEA--HAAYDEGEVPIGAVITCQGRIIARAHNQTETLNDVTAHAEMLAIT 97

Query: 62  EAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A  +  G      T YVT+EPC      P CA  +    + R+V    D          
Sbjct: 98  AAAAQLGGKYLPQCTLYVTVEPC------PMCAGAMGWAQVSRIVYGAGDDKRGYQRYAP 151

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYL 142
             L  K  +   ++E E K  +  + 
Sbjct: 152 NVLHTKATVTGGVLEEECKQLMQQFF 177


>gi|288929641|ref|ZP_06423485.1| cytidine/deoxycytidylate deaminase family protein [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288329146|gb|EFC67733.1| cytidine/deoxycytidylate deaminase family protein [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 144

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 52/145 (35%), Gaps = 17/145 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D + M  AL  +R    L      +  +I   G V+ R      T      HAE+QA+  
Sbjct: 4   DEQMMRKALDEARQA--LAQGEVPIGAVIACKGRVVARAHNLTETLCDVTAHAEMQAITA 61

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G      T YVT+EPC      P CA       + R+V    D           
Sbjct: 62  AANMLGGKYLPECTLYVTVEPC------PMCAGACGWAQLGRIVYGTRDEKRGYERFAPN 115

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYL 142
            L  K  +   ++E E +  + ++ 
Sbjct: 116 VLHAKATVTAGVLEEECRELMKSFF 140


>gi|302390826|ref|YP_003826646.1| tRNA-adenosine deaminase [Acetohalobium arabaticum DSM 5501]
 gi|302202903|gb|ADL11581.1| tRNA-adenosine deaminase [Acetohalobium arabaticum DSM 5501]
          Length = 155

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 22/155 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           + S D  +M  AL  ++           +  ++VK   VI R             HAE+ 
Sbjct: 1   MDSDDEFYMKLALAEAQKAYDKAE--VPIGAVVVKGDEVIARSHNLREKLADPTAHAEIL 58

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A++EA            T YVT+EPC        CA  +++  + R+V    D     +G
Sbjct: 59  AIKEAANTLGDWRLYNCTIYVTVEPC------VMCAGALVQARVERLVYGTADLKAGAAG 112

Query: 114 RGLQW-----LSQKGIIVDRMMESEGKIFLHAYLT 143
             L        + +  +   ++E E K  + ++  
Sbjct: 113 SILDLVQFSDFNHQLEVKSAILEDECKDIMESFFQ 147


>gi|24374802|ref|NP_718845.1| cytidine/deoxycytidylate deaminase family protein [Shewanella
           oneidensis MR-1]
 gi|24349479|gb|AAN56289.1|AE015766_5 cytidine/deoxycytidylate deaminase family protein [Shewanella
           oneidensis MR-1]
          Length = 194

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 56/156 (35%), Gaps = 22/156 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
            S  D  +M   +  +            V  ++VKDG+ I  G       +  C HAE+ 
Sbjct: 30  QSKVDEHWMR--VAMAMAEKAEAEGEVPVGAVLVKDGLQIATGYNLSISQHDPCAHAEIL 87

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            L  AG+         AT YVTLEPC+       CA  ++   I RVV    D     +G
Sbjct: 88  CLRAAGQTVENYRLLDATLYVTLEPCAM------CAGAMVHSRIARVVFGARDEKTGAAG 141

Query: 114 RGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTR 144
             L  L          +   ++  +    L  +  R
Sbjct: 142 TVLNLLQHPAFNHQVEVTSGVLAQDCADQLSRFFKR 177


>gi|315222391|ref|ZP_07864296.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Streptococcus anginosus F0211]
 gi|315188552|gb|EFU22262.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Streptococcus anginosus F0211]
          Length = 155

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 22/155 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ +   + L +    + C+IVKDG +IG G  A         HAEV A+EEA
Sbjct: 9   EEFMLEALKEAE--IALANDEIPIGCVIVKDGKIIGHGHNAREELQRAVMHAEVMAIEEA 66

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I +V+    +     +G     
Sbjct: 67  NAYEKSWRLLDTTLFVTIEPC------VMCSGAIGLARIPQVIYGAKNQKFGAAGSLYDI 120

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
                L+ +  + + ++E+E    +  +  ++ +K
Sbjct: 121 LTDERLNHRVELENGILEAECAQMMQDFFRKRRQK 155


>gi|283778333|ref|YP_003369088.1| CMP/dCMP deaminase zinc-binding protein [Pirellula staleyi DSM
           6068]
 gi|283436786|gb|ADB15228.1| CMP/dCMP deaminase zinc-binding protein [Pirellula staleyi DSM
           6068]
          Length = 155

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 43/122 (35%), Gaps = 17/122 (13%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAG 64
            +M  AL  +            V  +IV  G VI               HAE+ A+ +A 
Sbjct: 7   YYMQLALNEA--SAAFDEDEVPVGAVIVHSGRVIAAAHNQREALHDPTAHAEMIAITQAA 64

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           E        G T YVTLEPC        C+  I++  +  VV    DP     G     L
Sbjct: 65  ESMGDWRLEGCTLYVTLEPCIM------CSGAILQARVPTVVYGATDPKAGAVGSLFHLL 118

Query: 120 SQ 121
           + 
Sbjct: 119 TD 120


>gi|295692237|ref|YP_003600847.1| tRNA-specific adenosine deaminase [Lactobacillus crispatus ST1]
 gi|295030343|emb|CBL49822.1| tRNA-specific adenosine deaminase [Lactobacillus crispatus ST1]
          Length = 166

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 54/150 (36%), Gaps = 23/150 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEE 62
            ++M  A+  ++           +  ++V  DG V+G G            HAE+ A++E
Sbjct: 8   RKYMQLAIDQAKEAEKQ--GEVPIGAVVVDPDGRVVGTGYNRRELDEDATQHAEMIAIKE 65

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR--- 114
           A  +         + +VTLEPC      P CA  II   I+ V     DP     G    
Sbjct: 66  ACSKLGMWRLIDCSLFVTLEPC------PMCAGAIINSRIKDVYFGALDPKAGACGSVVD 119

Query: 115 --GLQWLSQKGIIVDRMMESEGKIFLHAYL 142
              ++  +     +  +   +    L  + 
Sbjct: 120 LFSVEKFNHHPHAIRGLYRDQCAQMLKDFF 149


>gi|326796823|ref|YP_004314643.1| CMP/dCMP deaminase zinc-binding protein [Marinomonas mediterranea
           MMB-1]
 gi|326547587|gb|ADZ92807.1| CMP/dCMP deaminase zinc-binding protein [Marinomonas mediterranea
           MMB-1]
          Length = 159

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 21/134 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            V  ++V++  +IGRG            HAE+QA+ +A          GAT YVTLEPCS
Sbjct: 24  PVGAIVVQNDEIIGRGFNRPITTCDPTAHAEIQAIRDACANVNNYRLPGATLYVTLEPCS 83

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK------GIIVDRMMESEG 134
                  CA  I+   I +VV    +P   V+    ++  Q        ++   + E   
Sbjct: 84  M------CAGAIVHARIEKVVYGATEPKSGVTESQGRFFEQAFLNHKVEVVGGVLAEEAS 137

Query: 135 KIFLHAYLTRQVEK 148
           +     +  R+ +K
Sbjct: 138 QQLTAFFKFRREQK 151


>gi|224541628|ref|ZP_03682167.1| hypothetical protein CATMIT_00799 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525466|gb|EEF94571.1| hypothetical protein CATMIT_00799 [Catenibacterium mitsuokai DSM
           15897]
          Length = 147

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 61/149 (40%), Gaps = 19/149 (12%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  +M+ AL+ +   +  +     + C+IV +G +I R      T      HAE+ A+ +
Sbjct: 3   DEEYMAEALKEAEIAM--SEDEVPIGCIIVYEGQIIARTHNQKETLKKATGHAEILAINQ 60

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A E        G T YVTLEPC        C   II+  + R+V+  +          ++
Sbjct: 61  ASEYLDLWHLDGCTMYVTLEPCMM------CTGAIIQSRMSRLVIGANVSKWPGFIELIE 114

Query: 118 W--LSQKGIIVDRMMESEGKIFLHAYLTR 144
              ++    +   +++ +    +  +  R
Sbjct: 115 NNPVNHHPDVQQGILKEQCATIVSEFFKR 143


>gi|209518682|ref|ZP_03267499.1| CMP/dCMP deaminase zinc-binding [Burkholderia sp. H160]
 gi|209500881|gb|EEA00920.1| CMP/dCMP deaminase zinc-binding [Burkholderia sp. H160]
          Length = 230

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/154 (27%), Positives = 59/154 (38%), Gaps = 22/154 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQ 58
           VS  D RFM  AL  +    G  +    V  ++V+   VI  G     G      HAE+ 
Sbjct: 55  VSERDLRFM--ALAQAAAEEGRAAGEVPVGAVLVRGDEVIATGFNHPIGAHDPSAHAEMV 112

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL  A +        G   YVTLEPC        CA  I+   I RVV    DP     G
Sbjct: 113 ALRAAAQSLENYRLPGCELYVTLEPCLM------CAGAIMHARISRVVFGARDPKTGACG 166

Query: 114 RGLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
             +       L+    +   ++E+E    L ++ 
Sbjct: 167 SVVDAFANPQLNHHTTVSGGVLEAECSAALRSFF 200


>gi|332883068|gb|EGK03352.1| hypothetical protein HMPREF9456_01989 [Dysgonomonas mossii DSM
           22836]
          Length = 148

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 55/145 (37%), Gaps = 17/145 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  +M  AL  +R           +  ++V  G +I RG     T      HAE+QA+  
Sbjct: 8   DDYYMRQALNEARQA--FDKGEVPIGAVVVCKGRIIARGHNLTETLTDVTAHAEMQAITA 65

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G+       YVT+EPC      P CA  ++   I ++V    D     S     
Sbjct: 66  AANVLGGKYLTDCILYVTIEPC------PMCAGGLLWSQISKIVYGAKDEKKGYSVFSPS 119

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYL 142
            L  K  +V  +ME E    +  + 
Sbjct: 120 ILHPKTEVVSGVMEDECASLMKEFF 144


>gi|124486136|ref|YP_001030752.1| hypothetical protein Mlab_1318 [Methanocorpusculum labreanum Z]
 gi|124363677|gb|ABN07485.1| CMP/dCMP deaminase, zinc-binding protein [Methanocorpusculum
           labreanum Z]
          Length = 151

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 57/155 (36%), Gaps = 20/155 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQ 58
           ++    ++M AA   +            +  ++V++G ++GRG       G P  H E+ 
Sbjct: 1   MTESMDQYMRAAYEEALAGRNEGG--IPIGAVLVRNGEIVGRGHNQRVQKGNPILHGEMD 58

Query: 59  ALEEAGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           AL  +G       +  T Y TL PC        C+  I+   I  VVV  D      +  
Sbjct: 59  ALSNSGRHPASFYKECTLYTTLAPCIM------CSGAILLYKIPEVVVGEDVNYPGET-- 110

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
              +L  +G+ V  +   E    +  ++       
Sbjct: 111 --AFLRSRGVKVTILNNEEIIRMMKTFIEENPTVW 143


>gi|257454187|ref|ZP_05619457.1| tRNA-specific adenosine deaminase [Enhydrobacter aerosaccus SK60]
 gi|257448360|gb|EEV23333.1| tRNA-specific adenosine deaminase [Enhydrobacter aerosaccus SK60]
          Length = 187

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 23/170 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
             D  FM AAL  +    G     P V  +IV  G +I +G       +    HAE+ A+
Sbjct: 25  DSDDAFMQAALDVAAEG-GERGEVP-VGAVIVHQGTIIAKGYNQPILSHDATAHAEIVAI 82

Query: 61  EEAGE------EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV--- 111
            +A +             +VTLEPC        C   II   + R+V    +P   +   
Sbjct: 83  RQACQYFDNYRLPADCELFVTLEPC------TMCLGAIIHARVSRLVFAATEPKAGMIVS 136

Query: 112 --SGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
                 + + +    +   +M  + +  L  +   + E++  +  ++  +
Sbjct: 137 QQDFSQVAFYNHFLTVKQGVMAEQSRALLQDFFRHRREQKKQLRQQLRAN 186


>gi|88799915|ref|ZP_01115487.1| hypothetical protein MED297_15045 [Reinekea sp. MED297]
 gi|88777346|gb|EAR08549.1| hypothetical protein MED297_15045 [Reinekea sp. MED297]
          Length = 162

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 49/147 (33%), Gaps = 30/147 (20%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  +M AAL+ +          P +  ++     +IG G     T      HAE+ A+  
Sbjct: 5   DEDYMRAALQQAEQA-YRAGEVP-IGAVVTYQDRIIGEGYNQTITQLDPSAHAEMLAIRA 62

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +        G T YVT+EPC        C   ++   I  +V    +P          
Sbjct: 63  AAQAIGNYRLVGCTLYVTIEPC------TMCVGLLVHSRIDCLVFGAPEPK--------- 107

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTR 144
                G I       E   F H +  R
Sbjct: 108 ----AGAIRSASCVHEQAHFNHEFEIR 130


>gi|326624390|gb|EGE30735.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 161

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 58/152 (38%), Gaps = 22/152 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEE 66
           M  AL  ++           V  ++V +  VIG G     G      HAE+ AL + G  
Sbjct: 1   MRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQGGLV 58

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            +       T YVTLEPC        CA  ++   I RVV    D     +G  +  L  
Sbjct: 59  LQNYRLLDTTLYVTLEPC------VMCAGAMVHSRIGRVVFGARDAKTGAAGSLIDVLHH 112

Query: 122 KGI-----IVDRMMESEGKIFLHAYLTRQVEK 148
            G+     I++ ++  E    L  +   + ++
Sbjct: 113 PGMNHRVDIIEGVLRDECATLLSDFFRMRRQE 144


>gi|284046792|ref|YP_003397132.1| CMP/dCMP deaminase zinc-binding protein [Conexibacter woesei DSM
           14684]
 gi|283951013|gb|ADB53757.1| CMP/dCMP deaminase zinc-binding protein [Conexibacter woesei DSM
           14684]
          Length = 154

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 56/152 (36%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
             D  +M  A+R +     L   +  V  ++V DG V+  G            HAE  AL
Sbjct: 7   PRDEYYMRLAMREADRA--LEHDDVPVGAVVVHDGEVVATGHNERELRQDPTAHAEAIAL 64

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            EA              YVTLEPC+       CA  I+   + RVV    DP    +G  
Sbjct: 65  REAARHLGSWRVLDTVLYVTLEPCAM------CAGAIVLARVPRVVFGTWDPKAGAAGSV 118

Query: 116 LQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
           L       L+ +  +   ++  E    L A+ 
Sbjct: 119 LDVLDQPQLNHRPEVDGGLLADECAAQLRAFF 150


>gi|297172082|gb|ADI23064.1| cytosine/adenosine deaminases [uncultured gamma proteobacterium
           HF0770_07M15]
          Length = 150

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 55/146 (37%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA--- 63
           M AA+R +            V  ++V++G VI R             HAE+ AL  A   
Sbjct: 1   MQAAIRQAVKA--YEEDEVPVGAVVVREGAVIARAWNQVELLKDATAHAEMIALTAAEAA 58

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS- 120
                  G T YVT EPC      P CA  ++ C I RVV    DP    +G  +  L  
Sbjct: 59  VGDWRLTGCTLYVTKEPC------PMCAGALVHCRIDRVVFGATDPRGGAAGGAMNLLQF 112

Query: 121 ----QKGIIVDRMMESEGKIFLHAYL 142
                   I   +ME + +  L  + 
Sbjct: 113 PTLNHACDITGGVMEPDCRNLLQTFF 138


>gi|190407280|gb|EDV10547.1| DRAP deaminase [Saccharomyces cerevisiae RM11-1a]
          Length = 591

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 14/150 (9%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEEAGEE 66
            R+M  A++ +    G T T  SV  ++V    V+  G +    G  HAE  AL +  + 
Sbjct: 436 RRYMEMAVKEADK-CGPTKTAFSVGAVLVHGTQVLATGYSRQLPGNTHAEQCALIKYSQL 494

Query: 67  --------ARGATAYVTLEPCSHY-GRSPPCAQFIIECG--IRRVVVCVDDPDVR-VSGR 114
                     G   Y T+EPCS     + PC   I+     I  V V V +PD    +  
Sbjct: 495 HPNCPTIVPMGTVLYTTMEPCSFRLSGNEPCCDRILATQGAIGTVFVGVMEPDTFVKNNT 554

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            L  L   G+   ++   E +  + A+   
Sbjct: 555 SLNKLESHGVNYIQIPGYEEECTIIAFKGH 584


>gi|125718966|ref|YP_001036099.1| hypothetical protein SSA_2184 [Streptococcus sanguinis SK36]
 gi|125498883|gb|ABN45549.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
          Length = 156

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ +   + L      + C++VK+G +IGRG  A         HAE+ A+EEA
Sbjct: 10  EAFMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEA 67

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I  VV    +     +G     
Sbjct: 68  NRHENSWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVVYGAANQKFGAAGSLYDI 121

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   +++ E    +  + 
Sbjct: 122 LTDERLNHRVEVEAGVLQEECAQIMQEFF 150


>gi|157961143|ref|YP_001501177.1| zinc-binding CMP/dCMP deaminase [Shewanella pealeana ATCC 700345]
 gi|157846143|gb|ABV86642.1| CMP/dCMP deaminase zinc-binding [Shewanella pealeana ATCC 700345]
          Length = 163

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 56/146 (38%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE- 65
           M  A+  +            V  ++VKDG V+  G     G      HAE+Q L +AG+ 
Sbjct: 1   MKMAMDMAIKAE--EKGEVPVGAVLVKDGEVVSAGFNFSIGLHDPSAHAEMQCLRQAGQI 58

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                    T YVTLEPC+       CA  I+   I R+V    D     +G  +  +  
Sbjct: 59  MQNYRLLDTTLYVTLEPCAM------CAGAIVHSRINRLVFGARDEKTGAAGTVIDIVRH 112

Query: 122 KGI-----IVDRMMESEGKIFLHAYL 142
                   +   ++E+E    L A+ 
Sbjct: 113 SAFNHQVDVSSGVLETECSEQLSAFF 138


>gi|73541535|ref|YP_296055.1| tRNA-adenosine deaminase [Ralstonia eutropha JMP134]
 gi|72118948|gb|AAZ61211.1| tRNA-adenosine deaminase [Ralstonia eutropha JMP134]
          Length = 177

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 61/172 (35%), Gaps = 22/172 (12%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
           + D R++ AA+  +R      +    V  ++V +  +I RG            HAE+QAL
Sbjct: 11  ARDERYLRAAMDEARLAE--AAGEVPVGAVVVWNDAIIARGHNLPIKSMDPSAHAEMQAL 68

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A +            YVTLEPC+       C+  I+   +R VV    DP    +G  
Sbjct: 69  RAAAQVLGNYRMPECELYVTLEPCAM------CSGAILHARLRHVVFGASDPKTGAAGSV 122

Query: 116 LQWLSQK-----GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           +    Q        I   ++  E    L  +   +   +    L      D 
Sbjct: 123 VNLFEQAQLNHQTTITGGVLADECGQMLKDFFGARRRAQKAAQLAARTLSDP 174


>gi|89898061|ref|YP_515171.1| cytosine/adenosine deaminases [Chlamydophila felis Fe/C-56]
 gi|89331433|dbj|BAE81026.1| cytosine/adenosine deaminases [Chlamydophila felis Fe/C-56]
          Length = 157

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 51/147 (34%), Gaps = 21/147 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
             D  FM  ALR +R           V C+IVKD  +I RG            HAE+  +
Sbjct: 4   EKDIFFMKQALREARQA--YDEDEVPVGCVIVKDNKIIARGHNTIEKLQDPTAHAEILCI 61

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A +            Y TLEPC        CA  I +  +RR+V    D  +   G  
Sbjct: 62  GAAAQYLENWRLVDTVLYCTLEPCLM------CAGAIQQARVRRIVWAAPDLRLGAGGSW 115

Query: 116 LQWLSQ----KGIIVDRMMESEGKIFL 138
           +   ++      +     +  E    L
Sbjct: 116 INVFTEKHPFHRVECFSGICREESEQL 142


>gi|75911133|ref|YP_325429.1| cytidine/deoxycytidylate deaminase [Anabaena variabilis ATCC 29413]
 gi|75704858|gb|ABA24534.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Anabaena
           variabilis ATCC 29413]
          Length = 143

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 19/150 (12%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
            D  FM  A++ +    G       +  ++VKDG ++GRG            HAE+  L 
Sbjct: 1   MDE-FMQVAIQEA--TQGRQEGGIPIGSVLVKDGKILGRGHNKRVQDRDPVTHAEIDCLR 57

Query: 62  EAG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
            AG     RG T Y TL PC        CA  +++ GI++V+V               ++
Sbjct: 58  NAGRIGSYRGTTLYSTLMPCY------LCAGAVVQFGIKKVIVGESRTFPGAK----DFM 107

Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
              G+ V  +   E +  +  ++    E  
Sbjct: 108 VSHGVEVIDLNLDECEQMMSEFIQANSELW 137


>gi|103488226|ref|YP_617787.1| CMP/dCMP deaminase, zinc-binding [Sphingopyxis alaskensis RB2256]
 gi|98978303|gb|ABF54454.1| tRNA-adenosine deaminase [Sphingopyxis alaskensis RB2256]
          Length = 155

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/107 (32%), Positives = 43/107 (40%), Gaps = 17/107 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA--- 63
           M  AL  +R  +        V  +IVKDG VI  G       +    HAE+ A+  A   
Sbjct: 10  MRRALDLAR--IAADWGEVPVGAVIVKDGAVIAEGHNRPRESHDPTAHAEIVAMRMAAAK 67

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
              E   G   YVTLEPC+       CA  I    I R+    DDP 
Sbjct: 68  LGNERLDGCDLYVTLEPCAM------CAGAIAHARIARLYYGADDPK 108


>gi|331005351|ref|ZP_08328736.1| tRNA-specific adenosine-34 deaminase [gamma proteobacterium
           IMCC1989]
 gi|330420848|gb|EGG95129.1| tRNA-specific adenosine-34 deaminase [gamma proteobacterium
           IMCC1989]
          Length = 158

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 49/129 (37%), Gaps = 20/129 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  ++VKD  +IG G            HAE+QAL  A           AT YVTLEPC 
Sbjct: 27  PVGAVVVKDNEIIGSGFNQPISLCDPTAHAEIQALRNAANHIGNYRLNSATLYVTLEPCG 86

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDV-----RVSGRGLQWLSQKGIIVDRMMESEGK 135
                  CA  I+   I R+V    +P       +       +L+ K +    +   E  
Sbjct: 87  M------CAGAIVHSRIARLVYGATEPKAGVIVSQTQQLDKAYLNHKVLYQGGVCAEECS 140

Query: 136 IFLHAYLTR 144
             +  + +R
Sbjct: 141 EIISVFFSR 149


>gi|302185724|ref|ZP_07262397.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae pv. syringae 642]
          Length = 169

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 17/127 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
           S D  FM      +    G       V  ++V++G +IGRG            HAE+ A+
Sbjct: 10  SKDQYFMRE--ALALAAQGALLGEVPVGAVVVQNGEIIGRGYNCPISGSDPSAHAEMVAI 67

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A +        G+T YVTLEPCS       CA  I+   + RVV    +P   +    
Sbjct: 68  RQAAKALDNYRLPGSTLYVTLEPCSM------CAGLIVHSRVARVVYGALEPKAGIVQSQ 121

Query: 116 LQWLSQK 122
            Q+ SQ 
Sbjct: 122 GQFFSQA 128


>gi|257458848|ref|ZP_05623971.1| riboflavin biosynthesis protein RibD [Campylobacter gracilis
           RM3268]
 gi|257443836|gb|EEV18956.1| riboflavin biosynthesis protein RibD [Campylobacter gracilis
           RM3268]
          Length = 147

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 8/135 (5%)

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
            +Y   EPC+H GR+P CA+ + + G+ RVV+   D + + +G     L     +   + 
Sbjct: 2   CSYAAFEPCAHRGRTPSCAELLAQLGLSRVVIGTRDTNAQAAGGAEILLCGGIEVKFDVC 61

Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
            +  +     +   +      I +         + + G     I     +  VH LR   
Sbjct: 62  HAAAEELAEPFYLAREGGFCFIKIN--------VALNGAVHGRIGSEKQRAFVHELRGVC 113

Query: 191 DAILVGIGTVLADDP 205
           D + VG  TV AD P
Sbjct: 114 DYVGVGGQTVRADRP 128


>gi|307579329|gb|ADN63298.1| CMP/dCMP deaminase zinc-binding protein [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 151

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 57/155 (36%), Gaps = 22/155 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
           M  AL  +          P V  +++  +G ++G G     T++    HAE+ AL  AG 
Sbjct: 1   MRHALTLAHRAATEFDEIP-VGAVLISPEGTLLGEGCNYNITSHDPSAHAEIMALRAAGH 59

Query: 66  EAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL- 119
           + R     G T YVTLEPC        CA  II   I  ++    DP     G     L 
Sbjct: 60  QLRNHRMPGCTLYVTLEPCLM------CAMAIIHARIAHLIYAAADPKTGACGSTFDILN 113

Query: 120 ----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
               +    +   ++  E    L  Y   +  +  
Sbjct: 114 DPRHNHHVHVYGGLLAEEASRRLTNYFRTKRGQPP 148


>gi|296171942|ref|ZP_06852987.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295893875|gb|EFG73647.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 253

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 68/178 (38%), Gaps = 19/178 (10%)

Query: 186 LRAQSDAILVGIGTVLADD---PELTC------RLNGLQEHSPMRIILDPHFKLSLDSKI 236
           LR  +D I+VG GTV  +     +L+       +  G  E  P+ I+     +L  D  +
Sbjct: 69  LRELADVIVVGAGTVRVEGYSGAQLSVAQRQQRQDRGQSEVPPLAIV-TKSGRLDRDMAV 127

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK-----LLTILVGRGVTSLL 291
             T    P +++T       A     +   ++ C   D        LL  L  RG+  +L
Sbjct: 128 F-TRTEVPPLVLTCAAAADPARRLLGEVCEVVDCSGDDPGAVDEAVLLATLGARGMRRIL 186

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
            EGG  +  S I   ++D + L  +  ++G            L      +RR +  +D
Sbjct: 187 TEGGPMLLDSLIRRDMLDELCLTVAPYLVGGLARRIATGPSQL---LTRMRRAHVLTD 241


>gi|206901944|ref|YP_002250953.1| tRNA-specific adenosine deaminase [Dictyoglomus thermophilum
           H-6-12]
 gi|206741047|gb|ACI20105.1| tRNA-specific adenosine deaminase [Dictyoglomus thermophilum
           H-6-12]
          Length = 156

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 17/113 (15%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
           +SS D+ FM  A++ +     L      V  ++V +  +IGRG     T      HAE+ 
Sbjct: 5   LSSIDSFFMHEAIKEAEKA--LKKGEVPVGAVVVFNEKIIGRGYNLRETKKSPILHAEII 62

Query: 59  ALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           A+E+A            T YVTLEPC        C   I+   I R+V   ++
Sbjct: 63  AIEKAVKKINDWRLYNCTLYVTLEPCIM------CFGAILNSRIDRLVYGTEN 109


>gi|167623310|ref|YP_001673604.1| zinc-binding CMP/dCMP deaminase [Shewanella halifaxensis HAW-EB4]
 gi|167353332|gb|ABZ75945.1| CMP/dCMP deaminase zinc-binding [Shewanella halifaxensis HAW-EB4]
          Length = 163

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 57/148 (38%), Gaps = 22/148 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE- 65
           M  A+  +            V  ++VKDG V+  G     G      HAE+Q L +AG+ 
Sbjct: 1   MKMAMDMAIKAE--EKGEVPVGAVLVKDGEVLSAGFNFSIGLHDPSAHAEMQCLRQAGQI 58

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                    T YVTLEPC+       CA  I+   I R+V    D     +G  +  +  
Sbjct: 59  MQNYRLLDTTLYVTLEPCAM------CAGAIVHSRIGRLVFGAKDEKTGAAGTVIDIVRH 112

Query: 122 KGI-----IVDRMMESEGKIFLHAYLTR 144
                   +   ++ESE    L A+  R
Sbjct: 113 SAFNHQVEVSSGVLESECSEQLSAFFKR 140


>gi|332707760|ref|ZP_08427787.1| tRNA-adenosine deaminase [Lyngbya majuscula 3L]
 gi|332353463|gb|EGJ32976.1| tRNA-adenosine deaminase [Lyngbya majuscula 3L]
          Length = 163

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 18/121 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEE 62
            ++M+ A+  ++   G     P V  +IV + G +I  G            HAE+ AL  
Sbjct: 15  RKWMTVAIEIAQKA-GEAGEVP-VGAVIVDNEGKLIATGENRRERDKDPTAHAEILALRA 72

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AG++ +       T YVTLEPC      P CA  II   +  +V  VDDP          
Sbjct: 73  AGQQLQSWHLNHCTLYVTLEPC------PMCAGAIILARLGLLVYGVDDPKTGSIRTVAN 126

Query: 118 W 118
            
Sbjct: 127 L 127


>gi|94969369|ref|YP_591417.1| bifunctional deaminase-reductase-like [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551419|gb|ABF41343.1| bifunctional deaminase-reductase-like protein [Candidatus
           Koribacter versatilis Ellin345]
          Length = 295

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 85/248 (34%), Gaps = 29/248 (11%)

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC---GSVPITGFISKN 181
            +  +       + H         R  I      S D ++ + G    G         + 
Sbjct: 16  ELSPVEHPAYARYGHLGFPSAPFDRPWIYSNFVQSLDGIVSLLGRHFAGGDISQSPDDRW 75

Query: 182 QVHLLRAQSDAILVGIGTVL-------AD---------DPE---LTCRLNGLQEHSPMRI 222
            + LLRA +DAIL G  T+L       AD         DPE   L  +L    E +   +
Sbjct: 76  LMDLLRAHADAILTGATTLLDERNARGADSRGIVFRVVDPEVQDLRTKLGLGPERN---L 132

Query: 223 ILDPHFKLS-LDSKIIKTALLAPVIIVTENDDPVL-ALAFRKKNINIIYCDCRDLKKLLT 280
           I   H KL   D K+   + + P I+ TE     L +L      I        D      
Sbjct: 133 IATGHGKLPWRDLKLFDGSQVEPGIVTTELGATNLGSLPSHVALIIAGEGPLIDWSLAAH 192

Query: 281 ILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
            L     + +LL EGG  +  +   + L+D   +  S I  G+  +P   E    E    
Sbjct: 193 KLRDDLNIRNLLCEGGPTLYGALARADLIDEKFVTISPIETGQ-LVPPEQERQPNETGPA 251

Query: 340 CVRRDYFG 347
            +R   FG
Sbjct: 252 LLRPTIFG 259


>gi|299753369|ref|XP_001833230.2| diaminohydroxyphosphoribosylamino-pyrimidine deaminase [Coprinopsis
           cinerea okayama7#130]
 gi|298410269|gb|EAU88503.2| diaminohydroxyphosphoribosylamino-pyrimidine deaminase [Coprinopsis
           cinerea okayama7#130]
          Length = 170

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 58/163 (35%), Gaps = 36/163 (22%)

Query: 3   VSSFDAR--FMSAALRFSRWHVGLTSTNP---SVACLIV----KDGIVIGRGVTAY-GGC 52
           ++  D    +M  AL  +   V      P    V C++V       +V+  G +    G 
Sbjct: 1   MAPHDDHIVYMKMALEEAEKAV----PVPGAFCVGCVLVARLLHKSVVLSTGYSRELPGN 56

Query: 53  PHAEVQALEEAGEE---------------------ARGATAYVTLEPCS-HYGRSPPCAQ 90
            HAE  AL +  E                            Y TLEPCS       PCA 
Sbjct: 57  THAEANALAKVAEISPKEWSALSESYEASSDLSKILECTDVYTTLEPCSIRTSGLSPCAD 116

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
            +I+  +RR ++ V++P   V   G   L   GI V  +   E
Sbjct: 117 ALIKAKVRRCIIGVNEPPDFVKCEGADRLKAAGIEVIWLSGME 159


>gi|327459989|gb|EGF06328.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK1]
          Length = 156

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 22/155 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ +   + L      + C++VK+G +IGRG  A         HAE+ A+EEA
Sbjct: 10  EAFMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEA 67

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I  V+    +     +G     
Sbjct: 68  NRHENSWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVIYGAANQKFGAAGSLYDI 121

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
                L+ +  +   +++ E    +  +   + +K
Sbjct: 122 LTDERLNHRVEVETGVLQEECAQIMQDFFRNRRQK 156


>gi|118466407|ref|YP_882236.1| hypothetical protein MAV_3050 [Mycobacterium avium 104]
 gi|118167694|gb|ABK68591.1| riboflavin biosynthesis protein RibD [Mycobacterium avium 104]
          Length = 236

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 64/155 (41%), Gaps = 12/155 (7%)

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADD--P-ELT-----CRLNGLQEHSPMRIIL 224
           P++    +  + +LR  +D +LVG GT  A++  P  LT      RL+  +   P   ++
Sbjct: 47  PLSCRTDQRLLRILRGLADVVLVGAGTARAENYGPVRLTDAARARRLHEGRAAPPPIAVV 106

Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
               +L   +++       P+++               +++ +   +  D+ + + +L  
Sbjct: 107 SRSGELP--ARLFSDPEQPPILVTCARTAA--RPDLDAQHVLVAGEETVDVARAVAMLRE 162

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
            G+  +L EGG  +    + +  +  + +  +  +
Sbjct: 163 AGMHRILCEGGPTLLDELVEADALTELCVTLAPKL 197


>gi|326802964|ref|YP_004320782.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651114|gb|AEA01297.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Aerococcus urinae ACS-120-V-Col10a]
          Length = 162

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 55/148 (37%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
            FM AA+  ++    L      +  + V  G VIGRG            HAE+QA+ +A 
Sbjct: 7   YFMQAAIDQAKKAQDLDEV--PIGAVAVYRGQVIGRGYNLREQSQDATDHAEMQAIRQAN 64

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW- 118
                        YVTLEPCS       C+  I+   IR +     DP     G  +   
Sbjct: 65  RYLNNWRLNDVDLYVTLEPCSM------CSGAIVLSRIRCLYFGASDPKAGTCGSLMNLV 118

Query: 119 ----LSQKGIIVDRMMESEGKIFLHAYL 142
               L+ +  +V  +   E    L ++ 
Sbjct: 119 QDPRLNHQVDLVSGLRGEECSQLLKSFF 146


>gi|193212272|ref|YP_001998225.1| CMP/dCMP deaminase zinc-binding [Chlorobaculum parvum NCIB 8327]
 gi|193085749|gb|ACF11025.1| CMP/dCMP deaminase zinc-binding [Chlorobaculum parvum NCIB 8327]
          Length = 148

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 18/151 (11%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
             D  FM+ AL  +R           V  ++V++G +I  G            H E+  +
Sbjct: 2   DRDREFMALALEQARKS--YEEGGVPVGAVMVENGKLIAAGHNQRVQNADPIAHGEMDCI 59

Query: 61  EEAGEEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            +AG  AR    T Y TL PC        CA  I++ GI RVVV  D    R      ++
Sbjct: 60  RKAGRRARYDTVTLYTTLSPCMM------CAGAIVQFGIGRVVVGED----RNFKGNAEF 109

Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           L + G+ V  + +   +  +  ++  + +  
Sbjct: 110 LREHGVEVTLLDDEGCRALMDTFIAERPDLW 140


>gi|110636535|ref|YP_676742.1| cytosine/adenosine deaminase [Cytophaga hutchinsonii ATCC 33406]
 gi|110279216|gb|ABG57402.1| cytosine/adenosine deaminase [Cytophaga hutchinsonii ATCC 33406]
          Length = 148

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 48/147 (32%), Gaps = 17/147 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           D  FM  AL+ ++           V  ++V +  +I R             HAE+ A+  
Sbjct: 7   DEHFMREALKEAQKA--FEKGEIPVGAVVVSNNQIISRAYNQTELLSDVTAHAEMLAITA 64

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G      T +VTLEPC        CA  +    I  VV    D     S     
Sbjct: 65  AANHLGGKYLSDCTLFVTLEPC------VMCAGALTWSQIGNVVYAAKDIRRGYSTISGL 118

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTR 144
            +  K  +       E +  L  +  +
Sbjct: 119 KMHPKTRVCQGPFSEESEKLLLDFFRK 145


>gi|218514635|ref|ZP_03511475.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
           [Rhizobium etli 8C-3]
          Length = 237

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 3/99 (3%)

Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
           DP  +L L +         P       D            + I+YC+    + LL  L  
Sbjct: 102 DPADRLELRTPGRAEGGTTPT---DAADLDSRRAVLVAAGVEIVYCNPYHPEVLLPALAT 158

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           RG++SLLVEGGA  A  F+ + LVD I LY++ +VIGE 
Sbjct: 159 RGISSLLVEGGAKTARLFLEAGLVDRIELYQAPVVIGEA 197


>gi|327481727|gb|AEA85037.1| cytidine/deoxycytidylate deaminase [Pseudomonas stutzeri DSM 4166]
          Length = 160

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
           S D RFM      +    G       V  ++V +G ++GRG       +    HAE+ A+
Sbjct: 10  SQDERFMRE--AMALAAQGAALGEVPVGAVLVHEGQIVGRGFNCPISRHDPSAHAEMVAI 67

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A +  +     G+T YVTLEPCS       CA  I+   ++RVV    +P   V    
Sbjct: 68  RAAAQALQNYRLPGSTLYVTLEPCSM------CAGLIVHSRVQRVVYGATEPKAGVVVSR 121

Query: 116 LQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
            Q     +L+ + ++   ++  E    L  + 
Sbjct: 122 GQFFDQGFLNHRVLVEGGVLAEECGAVLSEFF 153


>gi|325519416|gb|EGC98819.1| tRNA-adenosine deaminase [Burkholderia sp. TJI49]
          Length = 193

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 58/155 (37%), Gaps = 22/155 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEV 57
           PVS+ D  FM   L  +       +    V  ++V+   VI RG     G      HAE+
Sbjct: 25  PVSARDVHFMR--LAQAAAEEARAAGEVPVGAVLVRGDEVIARGFNHPIGGHDPSAHAEM 82

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL  A +  +     G   YVTLEPC        CA  I+   I RVV    DP     
Sbjct: 83  AALRMAAQHLQNYRMPGCELYVTLEPCLM------CAGAIMHARIARVVYGAADPKTGAC 136

Query: 113 GRGLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
           G  +       L+    +   ++  E    L ++ 
Sbjct: 137 GSVIDAFANPQLNHHTEVTGGVLADECGAALKSFF 171


>gi|310657417|ref|YP_003935138.1| yaaj [Clostridium sticklandii DSM 519]
 gi|308824195|emb|CBH20233.1| YaaJ [Clostridium sticklandii]
          Length = 157

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 58/152 (38%), Gaps = 21/152 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTN-PSVACLIVKDGIVIGRGVT--AYGGCP--HAEVQALEE 62
             FM  AL+ +       S N   + C+IVKDG +I R          P  HAE+ A++ 
Sbjct: 5   EFFMREALKEALKSY---SINEVPIGCVIVKDGEIIARAHNNREQNKDPLGHAELIAIKN 61

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G    G   YVTLEPC        C+  I++  I  + +   D         L 
Sbjct: 62  AAKHLGGWRLVGCDMYVTLEPCIM------CSGAIMDSRIENLYIGAIDDKRGCVASYLP 115

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            L  + I     +  E    +  Y+ ++  + 
Sbjct: 116 ILKDRMI--PHNVNYEYIQTISPYIIKRFFRH 145


>gi|284049062|ref|YP_003399401.1| CMP/dCMP deaminase zinc-binding protein [Acidaminococcus fermentans
           DSM 20731]
 gi|283953283|gb|ADB48086.1| CMP/dCMP deaminase zinc-binding protein [Acidaminococcus fermentans
           DSM 20731]
          Length = 159

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 53/149 (35%), Gaps = 22/149 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
           D  FM  AL  +R           V  ++V+DG V+ R             HAE   + +
Sbjct: 14  DVHFMEMALEEARQAA--REGEIPVGAVLVRDGQVLARDHNRREQDRDATAHAEFLVIRQ 71

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A    R       T YVTLEPC      P CA  I    + R+V    D      G    
Sbjct: 72  ACRLLRRWRLSDTTLYVTLEPC------PMCAGAIWNARVGRLVYGAWDSAAGSCGSQFN 125

Query: 118 W-----LSQKGIIVDRMMESEGKIFLHAY 141
                 L+ +  +   ++E E +  L  +
Sbjct: 126 LPAHPSLNFRTEVTAGVLEEECRKILQDF 154


>gi|218258211|ref|ZP_03474613.1| hypothetical protein PRABACTJOHN_00267 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225660|gb|EEC98310.1| hypothetical protein PRABACTJOHN_00267 [Parabacteroides johnsonii
           DSM 18315]
          Length = 147

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 52/147 (35%), Gaps = 17/147 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           D  FM  AL  +R           V  +IV +  +I R             HAE+ A+  
Sbjct: 7   DEYFMKQALIEARAAA--KEGEVPVGAVIVCNNRIIARAHNQTERLNDPTAHAEMLAITA 64

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A      +   G + YVT+EPC        CA  I    + ++V    D          +
Sbjct: 65  AVGVLGAKYLTGCSLYVTVEPC------VMCAGAIGWSQLSKIVYGATDEKRGFQQYAPK 118

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTR 144
            L  K  +   ++E+E    +  +  R
Sbjct: 119 ALHPKSTVKKGVLENECAEEMRNFFQR 145


>gi|41407523|ref|NP_960359.1| hypothetical protein MAP1425c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395876|gb|AAS03742.1| hypothetical protein MAP_1425c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 227

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 64/155 (41%), Gaps = 12/155 (7%)

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADD--P-ELT-----CRLNGLQEHSPMRIIL 224
           P++    +  + +LR  +D +LVG GT  A++  P  LT      RL+  +   P   ++
Sbjct: 38  PLSCRTDQRLLRILRGLADVVLVGAGTARAENYGPVRLTDAARARRLHEGRAAPPPIAVV 97

Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
               +L   +++       P+++               +++ +   +  D+ + + +L  
Sbjct: 98  SRSGELP--ARLFSDPEQPPILVTCARTAA--RPDLDAQHVLVAGEETVDVARAVAMLRE 153

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
            G+  +L EGG  +    + +  +  + +  +  +
Sbjct: 154 AGMHRILCEGGPTLLDELVEADALTELCVTLAPKL 188


>gi|145628165|ref|ZP_01783966.1| preprotein translocase subunit SecA [Haemophilus influenzae
           22.1-21]
 gi|144979940|gb|EDJ89599.1| preprotein translocase subunit SecA [Haemophilus influenzae
           22.1-21]
          Length = 159

 Score = 79.6 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 58/167 (34%), Gaps = 23/167 (13%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHAEVQALEEAGE 65
           M  AL  +     L      V  ++V D G +IG G            HAE+ AL    +
Sbjct: 1   MRYALELADKAEAL--GEIPVGAVLVDDAGNIIGEGWNLSIVQSDPTAHAEIIALRNGAK 58

Query: 66  EARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ--- 117
             +      +T YVTLEPC        CA  I+   I+R+V    D      G       
Sbjct: 59  NIQNYRLLNSTLYVTLEPC------TMCAGAILHSRIKRLVFGASDYKTGAIGSRFHFFD 112

Query: 118 --WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
              ++    I   ++  E    L  +  ++ E++      +    D 
Sbjct: 113 DYKMNHTLEITSGVLAEECSQKLSTFFQKRREEKKIEKALLKSLSDK 159


>gi|328768239|gb|EGF78286.1| hypothetical protein BATDEDRAFT_26851 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 156

 Score = 79.6 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 10/149 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEE 62
           S  D  +M  A+  +   +   S    V  ++V     +  G +    G  HAE   L +
Sbjct: 7   SVQDQAYMKLAIAEANKSIPSESAY-CVGAVLVLHPSTVYTGYSRELPGNTHAEQVCLIK 65

Query: 63  AG------EEARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDD-PDVRVSGR 114
           A       +  R A  Y T+EPCS     + PC   +I+ GI +V++ + + P++  +  
Sbjct: 66  ASHAGLDLDRMRDAIMYTTMEPCSLRLSGNLPCVNRLIDAGISKVLIGILEPPNLVENCS 125

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLT 143
           G+Q L+  GI V  +   +G+ F   Y  
Sbjct: 126 GVQMLTDAGIQVVHLTGFQGRSFKLFYKC 154


>gi|167855119|ref|ZP_02477891.1| hypothetical protein HPS_06809 [Haemophilus parasuis 29755]
 gi|167853754|gb|EDS24996.1| hypothetical protein HPS_06809 [Haemophilus parasuis 29755]
          Length = 157

 Score = 79.6 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 61/164 (37%), Gaps = 23/164 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           M  AL  +            V  ++V K G +IG G            HAE+QA+  AG+
Sbjct: 1   MQYALSLADKAE--AEGEIPVGAVLVDKTGNIIGEGWNRAIILSDPTAHAEIQAIRMAGQ 58

Query: 66  EAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           + +       T YVTLEPC        CA  I+   I R+V    D      G       
Sbjct: 59  QLQNYRLLDTTLYVTLEPC------TMCAGAILHSRIGRLVFGASDYKTGALGSRFHLFE 112

Query: 121 QKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
              +     I   +M +E    + A+  ++ E++ +  +    S
Sbjct: 113 DYKMNHFLQIRGGVMANECSQKISAFFRKRREEQKNQHVNYNSS 156


>gi|169599362|ref|XP_001793104.1| hypothetical protein SNOG_02499 [Phaeosphaeria nodorum SN15]
 gi|111069591|gb|EAT90711.1| hypothetical protein SNOG_02499 [Phaeosphaeria nodorum SN15]
          Length = 265

 Score = 79.6 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 64/162 (39%), Gaps = 26/162 (16%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
           ++  RFM  A+  +   +    T   V C+ VKDG +IGRG+        G  HAE  A+
Sbjct: 68  AYHERFMREAIAMAELALKSDET--PVGCVFVKDGEIIGRGMNETNRTLNGTRHAEFVAI 125

Query: 61  EEAGEEARG-------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
             AG  ++           YVT+EPC        CA  + + GIR V     +     +G
Sbjct: 126 --AGILSKSPVKILNETDLYVTVEPC------VMCASMLRQYGIRAVYFGCWNERFGGTG 177

Query: 114 RGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRS 150
             L   S   I     +   +   E  + L  +  ++ EK  
Sbjct: 178 GVLNIHSDPSIDKPYPVTGGIFREEAIMLLRKFYVQENEKAP 219


>gi|325688867|gb|EGD30875.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK115]
          Length = 156

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ +   + L      + C++VK+G +IGRG  A         HAE+ A+EEA
Sbjct: 10  EVFMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEA 67

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I  VV    +     +G     
Sbjct: 68  NRHENSWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVVYGAANQKFGAAGSLYDI 121

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   +++ E    +  + 
Sbjct: 122 LTDERLNHRVEVEVGVLQEECVQIMQDFF 150


>gi|189425440|ref|YP_001952617.1| CMP/dCMP deaminase zinc-binding [Geobacter lovleyi SZ]
 gi|189421699|gb|ACD96097.1| CMP/dCMP deaminase zinc-binding [Geobacter lovleyi SZ]
          Length = 145

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 20/140 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAGE 65
           FM AA+  +    GL      +  +IV +  +IGRG       G    H E+ ALE AG 
Sbjct: 4   FMQAAIEEAE--AGLAEGGIPIGSVIVHNNRIIGRGHNRRVQQGSAILHGEMDALERAGR 61

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +     R A  Y TL PC      P C+  I+  GI RVV+  +   +       + L  
Sbjct: 62  QPASVYREAVLYTTLSPC------PMCSGAILLYGIPRVVIGENRTFLGEE----ELLRS 111

Query: 122 KGIIVDRMMESEGKIFLHAY 141
           +G+ ++ + +      +  +
Sbjct: 112 RGVQLEVLQDERCIRLMEQF 131


>gi|110597776|ref|ZP_01386060.1| CMP/dCMP deaminase, zinc-binding [Chlorobium ferrooxidans DSM
           13031]
 gi|110340683|gb|EAT59163.1| CMP/dCMP deaminase, zinc-binding [Chlorobium ferrooxidans DSM
           13031]
          Length = 153

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 59/153 (38%), Gaps = 24/153 (15%)

Query: 6   FDARF-MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQA 59
            D  + M  A R +            V  +IV  +G VIGRG            HAE+ A
Sbjct: 2   LDFTWCMELAFREAIKA--FEKKEVPVGAVIVDSNGHVIGRGYNQVESLCDATAHAEMIA 59

Query: 60  LEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           L  A      +     T  VT+EPC      P CA  I+   + RVV    DP +  SG 
Sbjct: 60  LTSAMATIGNKYLEDCTLAVTMEPC------PMCAGAIVNAKVGRVVFGAYDPKMGASGT 113

Query: 115 GLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
            +       L+ +  +   +ME++ +  L  + 
Sbjct: 114 VMNITGCQQLNHQPEVYGGIMENKCRTLLQDFF 146


>gi|251772814|gb|EES53374.1| putative zinc-binding cytidine/deoxycytidylate deaminase
           [Leptospirillum ferrodiazotrophum]
          Length = 158

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 58/157 (36%), Gaps = 23/157 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P    D  FM+ AL  +R  +        V  ++V  G ++G GV           HAE+
Sbjct: 7   PNHQADVYFMNKALNLARNGIVDDVP---VGAIVVVGGEIVGEGVNQGRASHDPTAHAEI 63

Query: 58  QALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL  A           +T YVTLEPC        C   ++E  I R+V    DP   V+
Sbjct: 64  IALRRAAARLENYRLPLSTLYVTLEPCLM------CLGAMMEGRIHRLVFGARDPKRGVA 117

Query: 113 GRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTR 144
           G      +         +   + E E +  L  +  +
Sbjct: 118 GSLYDLHNDPRFTHRIKVESGLCEEESRELLRQFFEK 154


>gi|330975928|gb|EGH75994.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 169

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 22/154 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
           S D  FM      +    G       V  ++V++G +IGRG            HAE+ A+
Sbjct: 10  SNDRYFMRE--ALALAAQGALLGEVPVGAVVVQNGEIIGRGYNCPISGSDPSAHAEMVAI 67

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A +        G+T YVTLEPCS       CA  I+   + RVV    +P   +    
Sbjct: 68  RDAAKALDNYRLPGSTLYVTLEPCSM------CAGLIVHSRVARVVYGALEPKAGIVQSQ 121

Query: 116 LQ-----WLSQKGIIVDRMMESEGKIFLHAYLTR 144
            Q     +L+ + +    ++  E    L  +   
Sbjct: 122 GQFFSQAFLNHRVVFEGGVLGEECGTMLSEFFRM 155


>gi|291287100|ref|YP_003503916.1| CMP/dCMP deaminase zinc-binding protein [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290884260|gb|ADD67960.1| CMP/dCMP deaminase zinc-binding protein [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 158

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 56/154 (36%), Gaps = 22/154 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQ 58
            +  D  FM+ A++ +            +  ++V +G VIGRG            HAE+ 
Sbjct: 4   FTEQDIFFMNEAVKEAEGAA--AKGEVPIGAVVVSEGAVIGRGSNKKNSGKSALNHAEII 61

Query: 59  ALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+E+A  +         T YVTLEPC        CA  II   IR V+    +P      
Sbjct: 62  AIEDASSKIGDWRLDECTLYVTLEPCLM------CAGAIIHARIRNVIFGTTEPKFGGVI 115

Query: 114 R-----GLQWLSQKGIIVDRMMESEGKIFLHAYL 142
                  +  L+ K      +   E    +  + 
Sbjct: 116 SLARTFDIDGLNHKVSYKGGLHSDEISAMMKQFF 149


>gi|295398379|ref|ZP_06808419.1| cytidine/deoxycytidylate deaminase [Aerococcus viridans ATCC 11563]
 gi|294973332|gb|EFG49119.1| cytidine/deoxycytidylate deaminase [Aerococcus viridans ATCC 11563]
          Length = 175

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            +  ++V  G +IGRG     T+     HAE+ A+ EA           A  YVTLEPC 
Sbjct: 37  PIGAVVVYQGEIIGRGHNLRETSQDATTHAEILAIREANRNRASWRLADADLYVTLEPC- 95

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL-----SQKGIIVDRMMESEGK 135
                P C+  +I+  IR V     D     +G  +  L     + +  ++  +M  E K
Sbjct: 96  -----PMCSGAMIQSRIRHVYFGAYDQKGGTAGTLMNLLDDSRFNHQVEVIGGVMHEECK 150

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 151 ALLQDFF 157


>gi|240949642|ref|ZP_04753977.1| tRNA-adenosine deaminase, cytosine/adenosine deaminases
           [Actinobacillus minor NM305]
 gi|240295900|gb|EER46576.1| tRNA-adenosine deaminase, cytosine/adenosine deaminases
           [Actinobacillus minor NM305]
          Length = 150

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 58/154 (37%), Gaps = 23/154 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACL-IVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           M  AL  +          P V  + I K+G ++G G            HAE+QA+  AGE
Sbjct: 1   MQYALSLADKAE-QEGEIP-VGAVLIDKNGKILGEGWNRSIILSDSTAHAEIQAIRMAGE 58

Query: 66  EAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           + +       T YVTLEPC        CA  I+   I R+V    D      G       
Sbjct: 59  QLQNYRLLDTTLYVTLEPC------TMCAGAILHSRIGRLVFGASDYKTGAIGSRFHLFE 112

Query: 121 QKGI-----IVDRMMESEGKIFLHAYLTRQVEKR 149
              +     I   +M  E    + A+  ++ +++
Sbjct: 113 DYKMNHFLQIRGGVMRDECSQKISAFFKKRRQEQ 146


>gi|323331668|gb|EGA73082.1| Rib2p [Saccharomyces cerevisiae AWRI796]
 gi|323335647|gb|EGA76930.1| Rib2p [Saccharomyces cerevisiae Vin13]
 gi|323346638|gb|EGA80923.1| Rib2p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323352328|gb|EGA84863.1| Rib2p [Saccharomyces cerevisiae VL3]
          Length = 591

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 14/150 (9%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEEAGEE 66
            R+M  A++ +    G T T  SV  ++V    V+  G +    G  HAE  AL +  + 
Sbjct: 436 RRYMEMAVKEADK-CGPTKTAFSVGAVLVHGTQVLATGYSRELPGNTHAEQCALIKYSQL 494

Query: 67  --------ARGATAYVTLEPCSHY-GRSPPCAQFIIECG--IRRVVVCVDDPDVR-VSGR 114
                     G   Y T+EPCS     + PC   I+     I  V V V +PD    +  
Sbjct: 495 HPNCPTIVPMGTVLYTTMEPCSFRLSGNEPCCDRILATQGAIGTVFVGVMEPDTFVKNNT 554

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            L  L   G+   ++   E +  + A+   
Sbjct: 555 SLNKLESHGVNYIQIPGYEEECTIIAFKGH 584


>gi|207341390|gb|EDZ69458.1| YOL066Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 589

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 14/150 (9%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEEAGEE 66
            R+M  A++ +    G T T  SV  ++V    V+  G +    G  HAE  AL +  + 
Sbjct: 436 RRYMEMAVKEADK-CGPTKTAFSVGAVLVHGTQVLATGYSRELPGNTHAEQCALIKYSQL 494

Query: 67  --------ARGATAYVTLEPCSHY-GRSPPCAQFIIECG--IRRVVVCVDDPDVR-VSGR 114
                     G   Y T+EPCS     + PC   I+     I  V V V +PD    +  
Sbjct: 495 HPNCPTIVPMGTVLYTTMEPCSFRLSGNEPCCDRILATQGAIGTVFVGVMEPDTFVKNNT 554

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            L  L   G+   ++   E +  + A+   
Sbjct: 555 SLNKLESHGVNYIQIPGYEEECTIIAFKGH 584


>gi|151945568|gb|EDN63809.1| DRAP deaminase [Saccharomyces cerevisiae YJM789]
 gi|256273956|gb|EEU08875.1| Rib2p [Saccharomyces cerevisiae JAY291]
 gi|323303146|gb|EGA56948.1| Rib2p [Saccharomyces cerevisiae FostersB]
 gi|323307078|gb|EGA60361.1| Rib2p [Saccharomyces cerevisiae FostersO]
          Length = 591

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 14/150 (9%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEEAGEE 66
            R+M  A++ +    G T T  SV  ++V    V+  G +    G  HAE  AL +  + 
Sbjct: 436 RRYMEMAVKEADK-CGPTKTAFSVGAVLVHGTQVLATGYSRELPGNTHAEQCALIKYSQL 494

Query: 67  --------ARGATAYVTLEPCSHY-GRSPPCAQFIIECG--IRRVVVCVDDPDVR-VSGR 114
                     G   Y T+EPCS     + PC   I+     I  V V V +PD    +  
Sbjct: 495 HPNCPTIVPMGTVLYTTMEPCSFRLSGNEPCCDRILATQGAIGTVFVGVMEPDTFVKNNT 554

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            L  L   G+   ++   E +  + A+   
Sbjct: 555 SLNKLESHGVNYIQIPGYEEECTIIAFKGH 584


>gi|119485470|ref|ZP_01619798.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Lyngbya
           sp. PCC 8106]
 gi|119457226|gb|EAW38352.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Lyngbya
           sp. PCC 8106]
          Length = 161

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 18/120 (15%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA 63
            +M  AL  +R   G     P V  +I+   G ++               HAE+  L +A
Sbjct: 9   HWMKRALELARSA-GEAGEVP-VGAVIINPQGQLLAEAENRRERDNDPTAHAEILVLRQA 66

Query: 64  GEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G++ +       T YVTLEPC      P CA  I++  I+ +V  VDDP           
Sbjct: 67  GQKLKDWHLNQCTLYVTLEPC------PMCAGAIVQARIQLLVYGVDDPKTGTIRTVANI 120


>gi|118595115|ref|ZP_01552462.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
           [Methylophilales bacterium HTCC2181]
 gi|118440893|gb|EAV47520.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
           [Methylophilales bacterium HTCC2181]
          Length = 149

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 53/146 (36%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA--- 63
           M  AL  ++  +   +    V  +IV D I+IGRG            HAE+ A+ EA   
Sbjct: 1   MQEALAMAK--IAYANHEVPVGAVIVNDNIIIGRGCNELIQKNDPTGHAEMHAIREAART 58

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW--- 118
                      YVTLEPC      P C   I    I+ +     D    V    +     
Sbjct: 59  IKNYRLTNCDIYVTLEPC------PMCIGAIFNSRIKNLFFGAYDHKTGVCESVVNLGSF 112

Query: 119 --LSQKGIIVDRMMESEGKIFLHAYL 142
             L+    I   ++E+E K  L  + 
Sbjct: 113 KTLNHHCNIFGGILENESKNILQKFF 138


>gi|21673423|ref|NP_661488.1| cytosine deaminase [Chlorobium tepidum TLS]
 gi|21646524|gb|AAM71830.1| cytosine deaminase [Chlorobium tepidum TLS]
          Length = 148

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 18/151 (11%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQAL 60
           + D  FM+ AL  +R           V  ++V++G V+  G       G P  H E+  +
Sbjct: 2   NRDHEFMALALEQARKS--YDEGGVPVGAVMVENGKVLAAGHNQRVQQGDPIAHGEMDCI 59

Query: 61  EEAGEEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            +AG  AR    T Y TL PC        CA  I++ GI RVVV  D      +G    +
Sbjct: 60  RKAGRCARYDTVTLYTTLSPCMM------CAGAIVQFGIGRVVVGEDRNFKGNAG----F 109

Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           L + G+ V  + +   +  + A++  + +  
Sbjct: 110 LREHGVEVSLLDDEGCRSLMDAFIAERPDLW 140


>gi|66047004|ref|YP_236845.1| cytosine deaminase [Pseudomonas syringae pv. syringae B728a]
 gi|289676943|ref|ZP_06497833.1| cytosine deaminase [Pseudomonas syringae pv. syringae FF5]
 gi|302187712|ref|ZP_07264385.1| cytosine deaminase [Pseudomonas syringae pv. syringae 642]
 gi|63257711|gb|AAY38807.1| Cytosine deaminase [Pseudomonas syringae pv. syringae B728a]
 gi|330977861|gb|EGH77764.1| cytosine deaminase [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 145

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 20/148 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGE 65
           FM AA   ++  +GL      +  +IV  G +IGRG            H E+ ALE AG 
Sbjct: 4   FMQAAFDEAQ--LGLKEGGIPIGSVIVHGGKIIGRGHNRRVQEGSATKHGEMDALENAGR 61

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +     R +  Y TL PC+       C+  I+  GIR+V++  ++  +       + L  
Sbjct: 62  QPASVYRDSVLYTTLSPCAM------CSGAILLYGIRKVIIGENESFMGEE----ELLRS 111

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           +G+ +D +   E    +  ++  + E  
Sbjct: 112 RGVQIDVLDNPECTHMMKDFIASKPELW 139


>gi|332528366|ref|ZP_08404366.1| CMP/dCMP deaminase [Hylemonella gracilis ATCC 19624]
 gi|332042237|gb|EGI78563.1| CMP/dCMP deaminase [Hylemonella gracilis ATCC 19624]
          Length = 375

 Score = 79.6 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 49/133 (36%), Gaps = 23/133 (17%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK------DGIVIGRGVT----AYGGCPH 54
           + D  +M  AL  +       +    V  ++V          V+          +    H
Sbjct: 2   NTDLEYMRMALDQAYRAAQ--AGEVPVGAVLVHQDPHGGADRVLATAHNTPIADHDPTAH 59

Query: 55  AEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AE+QAL  AG           T YVTLEPC      P CA  ++   ++RVV    DP  
Sbjct: 60  AEMQALRAAGSVLGNYRLDDCTLYVTLEPC------PMCAGAMLHARLKRVVYGAADPKT 113

Query: 110 RVSGRGLQWLSQK 122
             +G  L   + +
Sbjct: 114 GAAGSVLDLFAHR 126


>gi|256783031|ref|ZP_05521462.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptomyces
           lividans TK24]
          Length = 247

 Score = 79.6 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 56/175 (32%), Gaps = 10/175 (5%)

Query: 191 DAILVGIGTVLA--------DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           D +L+G  T +         D   L  R        P   ++     L  D+ +I  A +
Sbjct: 69  DVLLIGATTAMIEGFRGVHPDRQTLDRRRRHGLADVPPTAVVSTGRTLPADAPVITRARV 128

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
              ++   +       A+++   +++    D  D    +  L  RG+  +  EGG  +  
Sbjct: 129 PTTVLTCASVPEPTRRAWQEAGADVVVAGEDTVDPAAAVAALTRRGLRRIDCEGGPRLFG 188

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           +   + LVD + L  S ++                              + L Y+
Sbjct: 189 ALTAAGLVDELRLTVSPLLTAGPAGRIATGPPIPPTGLRLATALAEDDTLLLRYL 243


>gi|229552943|ref|ZP_04441668.1| nucleoside deaminase [Lactobacillus rhamnosus LMS2-1]
 gi|229313687|gb|EEN79660.1| nucleoside deaminase [Lactobacillus rhamnosus LMS2-1]
          Length = 170

 Score = 79.6 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 18/131 (13%)

Query: 1   MPVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHA 55
           M ++  +  ++M AAL  ++    +      +  ++V D  +IGRG     T      HA
Sbjct: 1   MAMTDSEINQYMIAALVEAKKAAAI--GEVPIGAVVVHDQQIIGRGYNLRETTQDATQHA 58

Query: 56  EVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A++ A            + +VTLEPC      P CA  +I   I        DP   
Sbjct: 59  EILAIQAACRQLGTWRLEDCSLFVTLEPC------PMCAGAMINARIATCYFGATDPKAG 112

Query: 111 VSGRGLQWLSQ 121
           V+G     L  
Sbjct: 113 VAGTFYNLLED 123


>gi|1296969|emb|CAA65178.1| orf150 [Porphyromonas gingivalis]
          Length = 150

 Score = 79.6 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 57/150 (38%), Gaps = 17/150 (11%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57
             ++ D R+M  AL  +R           +  +IV  G ++ R             HAE+
Sbjct: 5   TFATDDIRYMRIALEEARAAA--DEGEIPIGAVIVCKGQIVARAHNRVERLNDPTAHAEM 62

Query: 58  QALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+  A     G+  R  T YVT+EPC        CA  +    I RVV    +P V   
Sbjct: 63  LAITMAVDAIGGKYLRDCTLYVTVEPCLM------CAGALRWTQIPRVVYGASEPKVGYR 116

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
                 L  K ++   ++  E +  + ++ 
Sbjct: 117 LFTDHALHPKCLVEGGILADESENLMRSFF 146


>gi|330950762|gb|EGH51022.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae Cit 7]
          Length = 167

 Score = 79.6 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 17/127 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
           S D  FM      +    G       V  ++V++G +IGRG            HAE+ A+
Sbjct: 10  SKDQYFMRE--ALALAAQGALLGEVPVGAVLVQNGEIIGRGYNCPISGSDPSAHAEMVAI 67

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A +        G+T YVTLEPCS       CA  I+   + RVV    +P   +    
Sbjct: 68  RDAAKTLDNYRLPGSTLYVTLEPCSM------CAGLIVHSRVARVVYGALEPKAGIVQSQ 121

Query: 116 LQWLSQK 122
            Q+ SQ 
Sbjct: 122 GQFFSQA 128


>gi|289766913|ref|ZP_06526291.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces lividans TK24]
 gi|289697112|gb|EFD64541.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces lividans TK24]
          Length = 248

 Score = 79.6 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 56/175 (32%), Gaps = 10/175 (5%)

Query: 191 DAILVGIGTVLA--------DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           D +L+G  T +         D   L  R        P   ++     L  D+ +I  A +
Sbjct: 70  DVLLIGATTAMIEGFRGVHPDRQTLDRRRRHGLADVPPTAVVSTGRTLPADAPVITRARV 129

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
              ++   +       A+++   +++    D  D    +  L  RG+  +  EGG  +  
Sbjct: 130 PTTVLTCASVPEPTRRAWQEAGADVVVAGEDTVDPAAAVAALTRRGLRRIDCEGGPRLFG 189

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           +   + LVD + L  S ++                              + L Y+
Sbjct: 190 ALTAAGLVDELRLTVSPLLTAGPAGRIATGPPIPPTGLRLATALAEDDTLLLRYL 244


>gi|296117773|ref|ZP_06836357.1| riboflavin biosynthesis protein RibD protein [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295969504|gb|EFG82745.1| riboflavin biosynthesis protein RibD protein [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 251

 Score = 79.6 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 8/142 (5%)

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI-ILDPHFKLSLDSKIIKTALLAP 244
           LR ++D I+VG GTV  +D          +  +P  I ++   F +   SK +  A+  P
Sbjct: 64  LRERADVIVVGSGTVSIED--YGGAQPTKERPTPAPIAVVTNSFNVDPQSKFVTEAITPP 121

Query: 245 VIIVTEN-----DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
            +I  +      +      A ++  +  I        +++  L  +G+  ++ EGG  + 
Sbjct: 122 FVIANDKSMNSPEYAEKREALKQAGVEFINSGTGSANEIVQALSAKGLNKIVCEGGPGLF 181

Query: 300 HSFINSRLVDSIILYRSQIVIG 321
             FI    VD + L     + G
Sbjct: 182 GLFIADHAVDQMYLTLDPKLTG 203


>gi|258540446|ref|YP_003174945.1| CMP/dCMP deaminase zinc-binding [Lactobacillus rhamnosus Lc 705]
 gi|257152122|emb|CAR91094.1| CMP/dCMP deaminase, zinc-binding [Lactobacillus rhamnosus Lc 705]
          Length = 168

 Score = 79.6 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 18/130 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M  S    ++M AAL  ++    +      +  ++V D  +IGRG     T      HAE
Sbjct: 1   MTDSEI-NQYMIAALVEAKKAAAI--GEVPIGAVVVHDQQIIGRGYNLRETTQDATQHAE 57

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A++ A            + +VTLEPC      P CA  +I   I        DP   V
Sbjct: 58  ILAIQAACRQLGTWRLEDCSLFVTLEPC------PMCAGAMINARIATCYFGATDPKAGV 111

Query: 112 SGRGLQWLSQ 121
           +G     L  
Sbjct: 112 AGTFYNLLED 121


>gi|324989861|gb|EGC21804.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK353]
 gi|325686683|gb|EGD28709.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK72]
          Length = 156

 Score = 79.6 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 22/155 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ +   + L      + C++VK+G +IGRG  A         HAE+ A+EEA
Sbjct: 10  EVFMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEA 67

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I  VV    +     +G     
Sbjct: 68  NRHENSWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVVYGAANQKFGAAGSLYDI 121

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
                L+ +  +   +++ E    +  +   + +K
Sbjct: 122 LTDERLNHRVEVEVGVLQEECAQIMQDFFRNRRQK 156


>gi|294632040|ref|ZP_06710600.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sp. e14]
 gi|292835373|gb|EFF93722.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sp. e14]
          Length = 272

 Score = 79.6 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 64/185 (34%), Gaps = 12/185 (6%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD--DPELT 208
            +   +  + D         S PI+          LRA +D ++VG  TV  +   P   
Sbjct: 55  WLRANMVSTLDG-AAQHEGRSQPISSAADMRIFGTLRALADVVVVGAETVRQEGYRPARA 113

Query: 209 C------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
                  R    Q  +P   ++    +L     +  + L+  +I+     +P       +
Sbjct: 114 RAEFAALREAAGQGPAPAIAVVTAGLELDFSLPLFTSPLVPTLILTGAAANPDRIAEAER 173

Query: 263 KNINIIYCD---CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
               ++        D  + +  L G G T LL EGG  +    + S ++D + L  S ++
Sbjct: 174 AGARVVIAGDGVGIDPVRAVKALAGLGHTRLLTEGGPRLLGQLVASEVLDELCLTVSPML 233

Query: 320 IGEGG 324
                
Sbjct: 234 TAGDA 238


>gi|313682141|ref|YP_004059879.1| cmp/dcmp deaminase zinc-binding protein [Sulfuricurvum kujiense DSM
           16994]
 gi|313155001|gb|ADR33679.1| CMP/dCMP deaminase zinc-binding protein [Sulfuricurvum kujiense DSM
           16994]
          Length = 145

 Score = 79.6 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 20/148 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAGE 65
           FM  AL  ++   GL      +  ++V +G +IGRG       G    H E+ ALE AG 
Sbjct: 4   FMKEALLEAQK--GLEEGGIPIGSVLVHNGKIIGRGHNRRIQKGSVILHGEMDALENAGR 61

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            +    +  T Y TL PC      P C+  I   GI +VVV  ++  +       + L  
Sbjct: 62  LSASLYKECTLYTTLSPC------PMCSGAIALYGIPKVVVGENENFMGEE----ELLQS 111

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           +G+ +D + +      +  ++       
Sbjct: 112 RGVTIDVLNDHNCIEMMKNFIHENPILW 139


>gi|289629167|ref|ZP_06462121.1| riboflavin synthase subunit alpha [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
          Length = 118

 Score = 79.6 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP--- 326
               DL+KL+  L  RGV  +LVE G  +A +F    LVD   ++ +   +G    P   
Sbjct: 23  AGHVDLRKLMGELATRGVNEVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARPLLD 82

Query: 327 SPLEEGYLEKNFMCVRRDYFGSD 349
            PL +         V+    G+D
Sbjct: 83  LPLAQMSEALELNIVQMRAVGND 105


>gi|124009723|ref|ZP_01694394.1| guanine deaminase [Microscilla marina ATCC 23134]
 gi|123984327|gb|EAY24671.1| guanine deaminase [Microscilla marina ATCC 23134]
          Length = 158

 Score = 79.6 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 16/128 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
           +     RF++ A+  +   +   S  P    ++VK+G +I  G            HAEV 
Sbjct: 1   MHENHERFINRAIELATQGMDSNSGGP-FGAVVVKNGEIIAEGHNRVTSTQDPTAHAEVV 59

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+ EA +     +      Y + EPC      P C   I     + V    +  D    G
Sbjct: 60  AIREACKVLNTFQLDDCVIYTSCEPC------PMCLGAIYWARPKAVYYACNREDAAHIG 113

Query: 114 RGLQWLSQ 121
              Q +  
Sbjct: 114 FDDQLIYD 121


>gi|225849713|ref|YP_002729947.1| tRNA-specific adenosine deaminase [Persephonella marina EX-H1]
 gi|225645628|gb|ACO03814.1| tRNA-specific adenosine deaminase [Persephonella marina EX-H1]
          Length = 154

 Score = 79.6 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 17/113 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
           S D +F+  A   +            +  +IVKDG +IG+G            HAE+ A+
Sbjct: 2   SEDIKFLDIAYEEALKA--YEKDEVPIGAVIVKDGEIIGKGHNQRIEKNNALYHAEIVAI 59

Query: 61  EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           EEA          G T YVT+EPC        CA  I++  I++VV    D  
Sbjct: 60  EEACRNTGSWRLDGCTLYVTVEPC------VMCAGAIMQSRIKKVVFGALDQK 106


>gi|289677917|ref|ZP_06498807.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae pv. syringae FF5]
 gi|330895911|gb|EGH28196.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 170

 Score = 79.2 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 17/127 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
           S D  FM      +    G       V  ++V++G +IGRG            HAE+ A+
Sbjct: 11  SNDQYFMRE--ALALAAQGALLGEVPVGAVVVQNGEIIGRGYNCPISGSDPSAHAEMVAI 68

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A +        G+T YVTLEPCS       CA  I+   + RVV    +P   +    
Sbjct: 69  RDAAKALDNYRLPGSTLYVTLEPCSM------CAGLIVHSRVARVVYGALEPKAGIVQSQ 122

Query: 116 LQWLSQK 122
            Q+ SQ 
Sbjct: 123 GQFFSQA 129


>gi|282897517|ref|ZP_06305518.1| Cytidine/deoxycytidylate deaminase, zinc-binding region protein
           [Raphidiopsis brookii D9]
 gi|281197612|gb|EFA72507.1| Cytidine/deoxycytidylate deaminase, zinc-binding region protein
           [Raphidiopsis brookii D9]
          Length = 185

 Score = 79.2 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 51/119 (42%), Gaps = 18/119 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYG----GCPHAEVQALEEAG 64
           +MS AL+ ++   G     P V C+IV   G +IG+G            HAE+ A+  A 
Sbjct: 20  WMSEALKLAQIA-GDAGEVP-VGCIIVNSQGDLIGQGENRKQRDQDPTAHAEIVAIRSAA 77

Query: 65  EEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
              +       T YVTLEPC      P CA  II   ++ +V  VDDP        +  
Sbjct: 78  RTLQNWHLDQCTLYVTLEPC------PMCAGAIIHARLQTLVYAVDDPKTGAIRTVINI 130


>gi|260102436|ref|ZP_05752673.1| tRNA-specific adenosine deaminase [Lactobacillus helveticus DSM
           20075]
 gi|260083756|gb|EEW67876.1| tRNA-specific adenosine deaminase [Lactobacillus helveticus DSM
           20075]
          Length = 168

 Score = 79.2 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 54/157 (34%), Gaps = 23/157 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHA 55
           M  S+   ++M  A+  ++           +  ++V  +G VIG G            HA
Sbjct: 1   MLSSADKKKYMELAIDQAKEAEKQ--GEVPIGAVVVDPEGKVIGTGYNRRELDEDSTQHA 58

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A++EA            + +VTLEPC      P CA  II   I+ V     DP   
Sbjct: 59  EMIAIKEACHNLGMWRLIDCSLFVTLEPC------PMCAGAIINSRIKDVYFGALDPKAG 112

Query: 111 VSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
             G  +              +  +   +    L  + 
Sbjct: 113 ACGSVVDLFEVEKFNHHPHSISGLYRDQCAQMLKDFF 149


>gi|218929978|ref|YP_002347853.1| tRNA-specific adenosine deaminase [Yersinia pestis CO92]
 gi|115348589|emb|CAL21531.1| putative zinc-binding protein [Yersinia pestis CO92]
          Length = 159

 Score = 79.2 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 48/123 (39%), Gaps = 17/123 (13%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEE 66
           M  AL  +            V  ++V    VIG G            HAE+ AL + G+ 
Sbjct: 1   MRHALTLALRAQ--EEGEVPVGAVLVLGNKVIGEGWNRPIRDNDPTAHAEIMALRQGGQA 58

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            +      AT YVTLEPC        CA  ++   IRR+V   +D     +G  +  L  
Sbjct: 59  VQNYRLLDATLYVTLEPC------VMCAGAMVHSRIRRLVYGANDVKTGAAGSLVDILRH 112

Query: 122 KGI 124
            G+
Sbjct: 113 PGM 115


>gi|313112820|ref|ZP_07798467.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624890|gb|EFQ08198.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 160

 Score = 79.2 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 56/149 (37%), Gaps = 21/149 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D+  M  AL  +R    L      V  ++ ++G V+        T      HAE+ A++ 
Sbjct: 3   DSELMGLALEEARKAAAL--GEVPVGAVVARNGEVVAAAHNTRETEKNALHHAELLAIDA 60

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++  G        +VTLEPC      P CA  II   IRRVV    D      G    
Sbjct: 61  ACKKLGGWRLWECELFVTLEPC------PMCAGAIINSRIRRVVYGAADTKAGCCGSVTD 114

Query: 118 WLS----QKGIIVDRMMESEGKIFLHAYL 142
             +       ++   +   E +  L A+ 
Sbjct: 115 LFAMPFNHHPVVEQGLRAEEAQELLQAFF 143


>gi|254564943|ref|XP_002489582.1| DRAP deaminase, catalyzes the third step of the riboflavin
           biosynthesis pathway [Pichia pastoris GS115]
 gi|238029378|emb|CAY67301.1| DRAP deaminase, catalyzes the third step of the riboflavin
           biosynthesis pathway [Pichia pastoris GS115]
 gi|328350006|emb|CCA36406.1| DRAP deaminase [Pichia pastoris CBS 7435]
          Length = 547

 Score = 79.2 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 8/133 (6%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG-GCPHAEVQALEEAG- 64
              M  A+  ++     T T  +V C+I   +G +I RG +    G  HAE  AL +   
Sbjct: 407 REMMKLAIEEAKKCD-HTETAFNVGCIITDENGEIISRGYSREFEGNTHAEQCALMKLDY 465

Query: 65  EEARGATAYVTLEPCSHY-GRSPPCAQFIIECG--IRRVVVCVDDPDVRVSGRG-LQWLS 120
           +   G+  Y T+EPCS     + PC   II+    +  V V V +P   ++     + L 
Sbjct: 466 KLPPGSILYTTMEPCSERLSGNKPCVNRIIDLKGEVITVFVGVVEPKKFIADNTGKRQLE 525

Query: 121 QKGIIVDRMMESE 133
             G+    +   E
Sbjct: 526 DAGVNYLHIDGYE 538


>gi|323143534|ref|ZP_08078213.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Succinatimonas hippei YIT 12066]
 gi|322416695|gb|EFY07350.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Succinatimonas hippei YIT 12066]
          Length = 175

 Score = 79.2 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 47/125 (37%), Gaps = 18/125 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALE 61
           D  FMS AL  +R    L      V  +IV     ++  G          C HAE+ AL 
Sbjct: 6   DEYFMSLALSQARHAWDL--GEIPVGAVIVNAAKEIVSVGCNRTIIDNDPCAHAEIVALR 63

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            AG+          T YVTLEPC        C+  +I   ++R+V    DP     G   
Sbjct: 64  NAGKILDTYRLTDLTMYVTLEPCCM------CSGALIHARLKRLVYGAKDPKTGACGSVF 117

Query: 117 QWLSQ 121
             L  
Sbjct: 118 DILID 122


>gi|224025750|ref|ZP_03644116.1| hypothetical protein BACCOPRO_02491 [Bacteroides coprophilus DSM
           18228]
 gi|224018986|gb|EEF76984.1| hypothetical protein BACCOPRO_02491 [Bacteroides coprophilus DSM
           18228]
          Length = 144

 Score = 79.2 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 53/149 (35%), Gaps = 17/149 (11%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
           + D  +M  AL+ +R           V  ++V    +I R      T      HAE+QA+
Sbjct: 2   ADDTYYMRQALQEAREAANR--GEVPVGAVVVCRDRIIARAHNLTETLTDVTAHAEMQAI 59

Query: 61  EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A     G+     T YVT+EPC        CA  I      R+V   DD         
Sbjct: 60  TAAAGWLGGKYLNNCTLYVTIEPC------VMCAGAIAWAQTGRLVYGADDEKRGFQRYA 113

Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            Q L  K  +   ++  E    +  +  +
Sbjct: 114 PQALHPKTQVTSGVLADECAQLMKDFFQK 142


>gi|28493718|ref|NP_787879.1| hypothetical protein TWT751 [Tropheryma whipplei str. Twist]
 gi|28572904|ref|NP_789684.1| hypothetical protein TW763 [Tropheryma whipplei TW08/27]
 gi|28411037|emb|CAD67422.1| conserved hypothetical protein (putative deaminase) [Tropheryma
           whipplei TW08/27]
 gi|28476760|gb|AAO44848.1| unknown [Tropheryma whipplei str. Twist]
          Length = 170

 Score = 79.2 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 46/125 (36%), Gaps = 18/125 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALE 61
           D + M  AL  +    G     P V  +I   +G  I  G            HAE+ A+ 
Sbjct: 24  DEKIMRKALCLAH-AAGEKGEIP-VGAVIADVNGKTIAEGFNKREESKDPTDHAEIIAIR 81

Query: 62  EAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           +A +  +     G T +VT+EPC        CA  I+   I RVV    +      G  +
Sbjct: 82  KASQMLKDWRLSGLTLFVTMEPC------TMCAGAIVTSRISRVVFGAFNNKTGSVGSRI 135

Query: 117 QWLSQ 121
             L  
Sbjct: 136 DILRD 140


>gi|323350632|ref|ZP_08086294.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis VMC66]
 gi|322123314|gb|EFX94999.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis VMC66]
          Length = 156

 Score = 79.2 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 22/155 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ +   + L      + C++VK+G +IGRG  A         HAE+ A+EEA
Sbjct: 10  EDFMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEA 67

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T +VT+EPC        C+  I    I  VV    +     +G     
Sbjct: 68  NRHENSWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVVYGAANQKFGAAGSLYDI 121

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
                L+ +  +   +++ +    +  +   + +K
Sbjct: 122 LTDERLNHRVEVETGVLQEDCAQIMQDFFRNRRQK 156


>gi|255712643|ref|XP_002552604.1| KLTH0C08756p [Lachancea thermotolerans]
 gi|238933983|emb|CAR22166.1| KLTH0C08756p [Lachancea thermotolerans]
          Length = 610

 Score = 79.2 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 12/137 (8%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQAL----EE 62
            ++M  A+  ++   G T+T  SV  ++     V+  G +    G  HAE  AL    E+
Sbjct: 458 RKYMEMAINEAKK-CGPTTTAFSVGAVLTNSDKVLSTGFSRELPGNTHAEQCALEKYFEQ 516

Query: 63  AGEE--ARGATAYVTLEPCSHY-GRSPPCAQFIIEC--GIRRVVVCVDDPDVR-VSGRGL 116
           +G      G+  Y T+EPCS     + PC   II+    IR V V V +PD    +    
Sbjct: 517 SGNRSVPPGSVLYTTMEPCSFRLSGNKPCVDRIIDASKSIRTVFVGVMEPDTFVKNNTSK 576

Query: 117 QWLSQKGIIVDRMMESE 133
             LSQ  I    +   E
Sbjct: 577 TKLSQHEIDYVLIPGYE 593


>gi|15834852|ref|NP_296611.1| cytidine/deoxycytidylate deaminase family protein [Chlamydia
           muridarum Nigg]
 gi|301336416|ref|ZP_07224618.1| cytidine/deoxycytidylate deaminase family protein [Chlamydia
           muridarum MopnTet14]
 gi|8163170|gb|AAF73539.1| cytidine/deoxycytidylate deaminase family protein [Chlamydia
           muridarum Nigg]
          Length = 157

 Score = 79.2 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 52/157 (33%), Gaps = 21/157 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
             D  FM  AL  +R    L      V C+IV+   +I RG  +         HAE+  +
Sbjct: 4   EKDLFFMKKALDEARKAYELDEV--PVGCIIVQGDAIIARGHNSVERLKDPTAHAEMICI 61

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A E       +  T Y TLEPC        CA  I    I R+V    D  +   G  
Sbjct: 62  SAAAEYLQNWRLKDTTLYCTLEPCLM------CAGAIQLARIPRIVWGAPDLRLGAGGSW 115

Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHI 152
           L       +      + E    +    +  + K    
Sbjct: 116 LNVF----LEKHPFHQVECCPGICHQESEWLMKNFFW 148


>gi|320583405|gb|EFW97618.1| DRAP deaminase, putative [Pichia angusta DL-1]
          Length = 569

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 12/133 (9%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEEAGEE 66
            ++M+ AL  +        +   V  +I   G VI  G T    G  HAE  A+E+  E+
Sbjct: 419 KKYMALALEQAEK-CPQIDSAFRVGAVITCGGEVISTGHTRELEGNTHAEQCAMEKYFEK 477

Query: 67  ------ARGATAYVTLEPCSHY-GRSPPCAQFIIECG--IRRVVVCVDDPDVRVSGR-GL 116
                   G   Y T+EPCS     + PC   I++         V V +P+  +S     
Sbjct: 478 TGSRTLPPGCEIYTTMEPCSERLSGNKPCLDRILDYKDCFTTCYVGVMEPNTFISENVSR 537

Query: 117 QWLSQKGIIVDRM 129
           + L + GI+  ++
Sbjct: 538 KKLEEAGILYIQV 550


>gi|219120746|ref|XP_002181105.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407821|gb|EEC47757.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 693

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 60/161 (37%), Gaps = 30/161 (18%)

Query: 6   FDARFMSAALRFSR-----WHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
            D  +M +A+  +        V      P+V  ++V  DG ++G+  + +     A   A
Sbjct: 98  QDEEYMLSAILEAETAGGERGVASAFPKPTVGAVLVADDGRILGKARSDF--RNDAVRAA 155

Query: 60  LEEAG--------------------EEARGATAYVTLEPCSHYGRS--PPCAQFIIECGI 97
           + +AG                    ++   +T YVTLEP S    +  PP  Q I   GI
Sbjct: 156 IAQAGLEVTPLSEWCVSWPSSEQLRKDLETSTLYVTLEPSSEREGTALPPITQLIELVGI 215

Query: 98  RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138
            RVV+   DP      +G   L   GI V      E +   
Sbjct: 216 PRVVIGCADPIQERHSKGAAALHSAGIEVRMGSVLEEECEN 256


>gi|303237080|ref|ZP_07323650.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella disiens FB035-09AN]
 gi|302482467|gb|EFL45492.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella disiens FB035-09AN]
          Length = 150

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 53/145 (36%), Gaps = 17/145 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M  AL  +            V  +IV    +I R             HAE+QA+  
Sbjct: 10  DEYYMGRALAMAEEA--FEKGEVPVGAVIVCRNHIISRAHNLTEALTDVTAHAEMQAITM 67

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           +     G+  +  T YVT+EPC        CA  +    I+R+V    D     S    +
Sbjct: 68  SANELGGKYLQDCTLYVTVEPCIM------CAGALGWSQIKRIVYGCSDDKRGFSLHAPK 121

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYL 142
            L  K ++   + E E K  +  + 
Sbjct: 122 ALHPKTVVTKGVREEECKALMQRFF 146


>gi|300770195|ref|ZP_07080074.1| tRNA-specific adenosine deaminase [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300762671|gb|EFK59488.1| tRNA-specific adenosine deaminase [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 154

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 17/147 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           D  +M AAL  ++           +  +IV  G +IG+G            HAE+QA   
Sbjct: 15  DEFYMKAALTLAKKA--YEEDEVPIGAVIVSQGKIIGKGYNLTERLNDVTAHAEMQAFTA 72

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G+  +  T YVT+EPC     +    Q      + R+V    D     S  G  
Sbjct: 73  ASSYLGGKYLKDCTLYVTVEPCVMCAGASYWTQ------VSRIVYGAPDEKRGASRYGKL 126

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTR 144
           +  +  II   + E   ++    +  +
Sbjct: 127 FHPKTEIISGVLQEECAELITSFFRQK 153


>gi|261380282|ref|ZP_05984855.1| tRNA-specific adenosine deaminase [Neisseria subflava NJ9703]
 gi|284796794|gb|EFC52141.1| tRNA-specific adenosine deaminase [Neisseria subflava NJ9703]
          Length = 240

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 22/155 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P  S    FM  A+  ++           V  +IV  G  I        G      HAE+
Sbjct: 87  PSQSDMETFMRLAIEQAKQSA--VLGEVPVGAVIVYQGEAIAATHNTCIGDHNVSHHAEI 144

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL  AG+            Y+TLEPCS       CA  +I+  + RV+    +     +
Sbjct: 145 NALAAAGKTLQNYRLEDCDVYITLEPCSM------CASALIQARVGRVIYGAAEAKTGAA 198

Query: 113 GRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
           G  +       L++   I+  ++  E +  L  + 
Sbjct: 199 GSVVDLFADKRLNKHTAILGGILAEECQSVLQDFF 233


>gi|207109478|ref|ZP_03243640.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 146

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 53/146 (36%), Gaps = 33/146 (22%)

Query: 1   MPVSSFDARF---MSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAE 56
           MP   F   +   +   L  +  H  L   NPSVAC ++ K+  ++           HAE
Sbjct: 1   MPFFPFMRLYESLLEMCLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTSHAE 60

Query: 57  VQALEEA-----------------------------GEEARGATAYVTLEPCSHYGRSPP 87
           V A + A                                 +     +TLEPC+ YG++P 
Sbjct: 61  VLAAKSALKILRPHLKSDLEKLEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPA 120

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSG 113
           C+  +     +RVV+  ++ + +   
Sbjct: 121 CSGLLEILKPKRVVIAAEENEAKKGD 146


>gi|323499747|ref|ZP_08104710.1| tRNA-specific adenosine deaminase [Vibrio sinaloensis DSM 21326]
 gi|323315193|gb|EGA68241.1| tRNA-specific adenosine deaminase [Vibrio sinaloensis DSM 21326]
          Length = 129

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 44/115 (38%), Gaps = 17/115 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  AL  ++           V  ++V +  VIG G     G      HAE+ AL + 
Sbjct: 20  EYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQG 77

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           G   +       T YVTLEPC        CA  ++   I RVV    D   R S 
Sbjct: 78  GLVLQNYRLLDTTLYVTLEPC------VMCAGAMVHSRIGRVVFGARDDKNRRSR 126


>gi|6324506|ref|NP_014575.1| Rib2p [Saccharomyces cerevisiae S288c]
 gi|2501674|sp|Q12362|RIB2_YEAST RecName: Full=Bifunctional protein RIB2; Includes: RecName:
           Full=tRNA pseudouridine synthase 8, cytoplasmic;
           AltName: Full=tRNA pseudouridylate synthase 8; AltName:
           Full=tRNA-uridine isomerase 8; Includes: RecName:
           Full=Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase; Short=DRAP deaminase; AltName:
           Full=Riboflavin-specific deaminase
 gi|642221|emb|CAA79742.1| DRAP deaminase [Saccharomyces cerevisiae]
 gi|1419887|emb|CAA99076.1| RIB2 [Saccharomyces cerevisiae]
 gi|285814824|tpg|DAA10717.1| TPA: Rib2p [Saccharomyces cerevisiae S288c]
          Length = 591

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 14/150 (9%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEEAGEE 66
            R+M  A++ +    G T T  SV  ++V    V+  G +    G  HAE  AL +  + 
Sbjct: 436 RRYMEMAVKEAGK-CGPTKTAFSVGAVLVHGTQVLATGYSRELPGNTHAEQCALIKYSQL 494

Query: 67  --------ARGATAYVTLEPCSHY-GRSPPCAQFIIECG--IRRVVVCVDDPDVR-VSGR 114
                     G   Y T+EPCS     + PC   I+     I  V V V +PD    +  
Sbjct: 495 HPNCPTIVPMGTVLYTTMEPCSFRLSGNEPCCDRILATQGAIGTVFVGVMEPDTFVKNNT 554

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            L  L   G+   ++   E +  + A+   
Sbjct: 555 SLNKLESHGVNYIQIPGYEEECTIIAFKGH 584


>gi|332637118|ref|ZP_08415981.1| tRNA-adenosine deaminase [Weissella cibaria KACC 11862]
          Length = 181

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 56/148 (37%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
            FM  A++ ++    L      +  ++V+ G +IGRG            HAE+QA+ EA 
Sbjct: 11  YFMGEAIKEAKKAGAL--GEVPIGAVVVQHGEIIGRGFNLRERLEDASQHAELQAITEAN 68

Query: 65  EEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL--- 116
              +      A  +VTLEPC        CA  I +  I  V    +DP            
Sbjct: 69  RLVKSWRLPDAQLFVTLEPCIM------CAGIIQQSRISDVYYGAEDPKAGAVHSMYHIL 122

Query: 117 --QWLSQKGIIVDRMMESEGKIFLHAYL 142
             + L+ +  +   + E E    L  + 
Sbjct: 123 EDERLNHQVHVHQGIREQESGDMLRNFF 150


>gi|298293557|ref|YP_003695496.1| CMP/dCMP deaminase zinc-binding protein [Starkeya novella DSM 506]
 gi|296930068|gb|ADH90877.1| CMP/dCMP deaminase zinc-binding protein [Starkeya novella DSM 506]
          Length = 158

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 51/126 (40%), Gaps = 16/126 (12%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
           S    FM  A+  SR  +    + P   C+IVKDG+++G G    V  +    H EV+A+
Sbjct: 2   STPEAFMRRAIEISREKMRSDGSAP-FGCVIVKDGVIVGEGVNNVVNNHDATSHGEVEAI 60

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +AG   +     G   Y T EPC        C   +    I R+       D    G  
Sbjct: 61  RDAGRRLKSWDLSGCELYTTCEPC------EMCVASMFWAKISRMYYANTLKDCTEIGFD 114

Query: 116 LQWLSQ 121
           L+ L Q
Sbjct: 115 LEPLKQ 120


>gi|167839755|ref|ZP_02466439.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
          MSMB43]
          Length = 54

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%)

Query: 2  PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP 53
            S  D   M+ ALR +   +  T  NP V C+I + G  +G G     G P
Sbjct: 3  TFSDIDRAHMAHALRLAEQGLYTTHPNPRVGCVIARGGQTLGTGWHRRAGEP 54


>gi|297623312|ref|YP_003704746.1| tRNA(Ile)-lysidine synthetase [Truepera radiovictrix DSM 17093]
 gi|297164492|gb|ADI14203.1| tRNA(Ile)-lysidine synthetase [Truepera radiovictrix DSM 17093]
          Length = 556

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 17/114 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--TAYGGCP--HAEV 57
           P    DAR+M  AL  +R           V  ++V+ G V+GRG   T   G P  HAE+
Sbjct: 398 PAPDEDARWMRLALNEARRAAERGEL--PVGAVVVRGGAVLGRGHNTTRESGDPSAHAEL 455

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
            A+ +A          G T +VTLEPC      P C   ++   + RVV    +
Sbjct: 456 HAIRQAAAALGDWRLAGCTLFVTLEPC------PMCFGALLSAHLPRVVYGATN 503


>gi|152997998|ref|YP_001342833.1| zinc-binding CMP/dCMP deaminase [Marinomonas sp. MWYL1]
 gi|150838922|gb|ABR72898.1| CMP/dCMP deaminase zinc-binding [Marinomonas sp. MWYL1]
          Length = 162

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 57/153 (37%), Gaps = 24/153 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTN-PSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
           D  +M              S N   V  ++V DG +IG G  A         HAE+QA+ 
Sbjct: 3   DHEWMER---AIALAAKAASENEIPVGAIVVLDGEIIGEGYNAPISLCDPTAHAEIQAIR 59

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG- 115
            A +        GAT YVTLEPCS       CA  ++   I RVV    +P   +     
Sbjct: 60  MACKTINNYRLPGATLYVTLEPCSM------CAGAMVHARIDRVVYAATEPKSGIVESQG 113

Query: 116 ----LQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
                 +L+ K  +   ++     + L  +   
Sbjct: 114 HFFEAPFLNHKVKVESGVLAEMASLQLTQFFQY 146


>gi|330872834|gb|EGH06983.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 169

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 22/154 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
           S D  FM      +    G       V  ++V++G +IGRG            HAE+ A+
Sbjct: 10  SNDQHFMRE--ALALAAQGALLGEVPVGAVVVQNGEIIGRGYNCPISGSDPSAHAEMVAI 67

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A +        G+T YVTLEPCS       CA  I+   + RVV    +P   +    
Sbjct: 68  RDAAKALDNYRLPGSTLYVTLEPCSM------CAGLIVHSRVARVVYGALEPKAGIVQSQ 121

Query: 116 LQ-----WLSQKGIIVDRMMESEGKIFLHAYLTR 144
            Q     +L+ + +    ++  E    L  +   
Sbjct: 122 GQFFSQGFLNHRVLFEGGVLGEECGAMLSEFFRM 155


>gi|104782115|ref|YP_608613.1| cytosine deaminase [Pseudomonas entomophila L48]
 gi|95111102|emb|CAK15822.1| Cytosine deaminase [Pseudomonas entomophila L48]
          Length = 141

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 20/147 (13%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGEE 66
           M AA+  +R   GL      +  ++V DG +IGRG            H E+ ALE AG +
Sbjct: 1   MQAAIDEARK--GLEEGGIPIGSVLVHDGKIIGRGHNRRVQKGSAILHGEMDALENAGRQ 58

Query: 67  A----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                + AT Y TL PC+       C+  I+  GI+RVV+  ++  +       Q L  +
Sbjct: 59  PASVYQQATLYTTLSPCAM------CSGAILLYGIKRVVIGENETFLGEE----QLLKNR 108

Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKR 149
           G+ +D   +   +  +  ++ ++ +  
Sbjct: 109 GVALDVRHDHTCRTLMQQFIEKKPQLW 135


>gi|124266938|ref|YP_001020942.1| tRNA-adenosine deaminase [Methylibium petroleiphilum PM1]
 gi|124259713|gb|ABM94707.1| tRNA-adenosine deaminase [Methylibium petroleiphilum PM1]
          Length = 205

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 55/139 (39%), Gaps = 25/139 (17%)

Query: 1   MPVSSF----DARFMSAALRFSRWHVGLTSTNPSVACLIVK--DG--IVIGRGV----TA 48
           M  S+     D   M  AL  ++    L    P V  +IV+  DG   V+  G     T 
Sbjct: 1   MSDSAEQARKDEAAMRLALDQAQNAW-LVGEVP-VGAVIVREVDGVHQVVATGYNRPITT 58

Query: 49  YGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           +    HAE+ AL  A +            YVTLEPC+       CA  ++    +RVV  
Sbjct: 59  HDPTAHAEIVALRHAAQLLGNYRLPDCELYVTLEPCAM------CAMALVHARFKRVVYA 112

Query: 104 VDDPDVRVSGRGLQWLSQK 122
             DP    +G  +   +Q+
Sbjct: 113 AADPKTGAAGSVIDLFAQR 131


>gi|134295996|ref|YP_001119731.1| tRNA-adenosine deaminase [Burkholderia vietnamiensis G4]
 gi|134139153|gb|ABO54896.1| tRNA-adenosine deaminase [Burkholderia vietnamiensis G4]
          Length = 197

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 57/155 (36%), Gaps = 22/155 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEV 57
           P S+ D  FM   L  +       +    V  ++V+   VI RG     G      HAE+
Sbjct: 30  PASARDLHFMR--LAQAAAEEARAAGEVPVGAVLVRGDEVIARGFNHPIGGHDPSAHAEM 87

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL  A +  +     G   YVTLEPC        CA  I+   I RVV    DP     
Sbjct: 88  AALRMAAQHLQNYRMPGCELYVTLEPCLM------CAGAIMHARIARVVYGAADPKTGAC 141

Query: 113 GRGLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
           G  +       L+    +   ++  E    L ++ 
Sbjct: 142 GSVIDAFANPQLNHHTEVTGGVLADECGAALKSFF 176


>gi|22297721|ref|NP_680968.1| putative cytidine or deoxycytidylate [Thermosynechococcus elongatus
           BP-1]
 gi|22293898|dbj|BAC07730.1| tlr0177 [Thermosynechococcus elongatus BP-1]
          Length = 164

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 50/130 (38%), Gaps = 20/130 (15%)

Query: 1   MPVSSFD--ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCP 53
           +P+S  D    +M  A+  +    G     P V  +IV  +  +I  G            
Sbjct: 5   LPLSETDPHDFWMQQAIALAEQA-GAADEVP-VGAVIVSAENELIATGENRRQRDHDPTA 62

Query: 54  HAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+ AL  AG+        G   YVTLEPC      P CA  I++  I  ++    DP 
Sbjct: 63  HAEIIALRRAGQRLGTWYLTGCRLYVTLEPC------PMCAGAIVQARIHTLIYGTTDPK 116

Query: 109 VRVSGRGLQW 118
                  LQ 
Sbjct: 117 SGAIDSVLQL 126


>gi|219870714|ref|YP_002475089.1| tRNA-adenosine deaminase [Haemophilus parasuis SH0165]
 gi|219690918|gb|ACL32141.1| tRNA-adenosine deaminase, cytosine/adenosine deaminases
           [Haemophilus parasuis SH0165]
          Length = 157

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 61/164 (37%), Gaps = 23/164 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           M  AL  +            V  ++V K G +IG G            HAE+QA+  AG+
Sbjct: 1   MQYALSLADKAE--AEGEIPVGAVLVDKTGNIIGEGWNRAIILSDPTAHAEIQAIRMAGQ 58

Query: 66  EAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           + +       T YVTLEPC        CA  I+   I R+V    D      G       
Sbjct: 59  QIQNYRLLDTTLYVTLEPC------TMCAGAILHSRIGRLVFGASDYKTGALGSRFHLFE 112

Query: 121 QKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
              +     I   +M +E    + A+  ++ E++ +  +    S
Sbjct: 113 DYKMNHFLQIRGGVMANECSQKISAFFRKRREEQKNQHVNYNSS 156


>gi|161506947|ref|YP_001576901.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Lactobacillus helveticus DPC 4571]
 gi|160347936|gb|ABX26610.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
           [Lactobacillus helveticus DPC 4571]
          Length = 168

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 54/157 (34%), Gaps = 23/157 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHA 55
           M  S+   ++M  A+  ++           +  ++V  +G VIG G            HA
Sbjct: 1   MLSSADKKKYMELAIDQAKEAEKQ--GEVPIGAVVVDPEGKVIGTGYNRRELDEDSTQHA 58

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A++EA            + +VTLEPC      P CA  II   I+ V     DP   
Sbjct: 59  EMIAIKEACHNLGMWRLIDCSLFVTLEPC------PMCAGAIINSRIKNVYFGALDPKAG 112

Query: 111 VSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
             G  +              +  +   +    L  + 
Sbjct: 113 ACGSVVDLFEVEKFNHHPHSIRGLYRDQCAQMLKDFF 149


>gi|284928847|ref|YP_003421369.1| tRNA-adenosine deaminase [cyanobacterium UCYN-A]
 gi|284809306|gb|ADB95011.1| tRNA-adenosine deaminase [cyanobacterium UCYN-A]
          Length = 162

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 18/121 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEE 62
            ++M  AL  ++    L   +  V  +IV + G +I +G            HAE+ A+ +
Sbjct: 9   HQWMKKALSLAQKAENL--EDVPVGAVIVDNYGNLIAQGHNCKKRNNDPTGHAEIVAIRQ 66

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++ +         YVTLEPC        C   II   I  +V  +DDP        L 
Sbjct: 67  ASQKLQSCYLEKCVLYVTLEPCIM------CTGAIIHSRIGLLVYGIDDPKTGAIRTVLN 120

Query: 118 W 118
            
Sbjct: 121 L 121


>gi|325528281|gb|EGD05445.1| riboflavin biosynthesis protein RibD [Burkholderia sp. TJI49]
          Length = 119

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 8/107 (7%)

Query: 254 PVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
              A A + +   I+         DL  +L  L  RG+  L VE G  +  S +  + VD
Sbjct: 2   EARAAALKARGAEIVPLANAHGKVDLPAMLAALGARGINELHVEAGHKLNGSLLREQCVD 61

Query: 310 SIILYRSQIVIGEGGIPSP--LEEGYLEKNFMCV--RRDYFGSDVCL 352
            +++Y +  ++G              L+     V  + +  G D+ +
Sbjct: 62  ELLVYLAPSLLGGDAAGMFDLAAPANLDARTRLVFHQIERIGDDLRI 108


>gi|295102136|emb|CBK99681.1| tRNA-adenosine deaminase [Faecalibacterium prausnitzii L2-6]
          Length = 162

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 55/149 (36%), Gaps = 21/149 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D   M AAL  +R    L      V  ++ KDG +I        T      HAE+ A++ 
Sbjct: 3   DFELMGAALEEARKAAAL--GEVPVGAVVAKDGEIISAAHNTRETEKNALHHAELLAIDA 60

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A ++  G        +VTLEPC      P C+  II   I+RVV    D      G    
Sbjct: 61  ACKKLGGWRLWQCELFVTLEPC------PMCSGAIINSRIKRVVYGAADVKAGCCGSVTD 114

Query: 118 WLS----QKGIIVDRMMESEGKIFLHAYL 142
             +       +I   +   E +  L  + 
Sbjct: 115 LFAQPFNHHPVIEKGLRADEAQQLLQEFF 143


>gi|256375715|ref|YP_003099375.1| bifunctional deaminase-reductase domain protein [Actinosynnema
           mirum DSM 43827]
 gi|255920018|gb|ACU35529.1| bifunctional deaminase-reductase domain protein [Actinosynnema
           mirum DSM 43827]
          Length = 262

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 75/209 (35%), Gaps = 19/209 (9%)

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           Y       R  + +    S D  +      S  + G   +    L R  +D +LVG GT 
Sbjct: 35  YDHPSGLDRPWVQVNFVASADGAM-TVDGRSGGLGGAADQKVFALGRDLADVVLVGAGTA 93

Query: 201 LAD---------DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251
            A+                  GL    P+ ++      L  DS +I   L+ P+++ T  
Sbjct: 94  AAEGYRGVVAGAARAERRARLGLAPIPPIAVV-SGRCSLEPDSPLITDTLVPPIVLTTSE 152

Query: 252 DDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
                     +   +++            L  L  RG+  +  EGG A+  S I + LVD
Sbjct: 153 APARRRAELTEAGADVVVAGESSVHPALALRALDERGLRRVDCEGGPALFASLIAADLVD 212

Query: 310 SIILYRSQIVIGEG------GIPSPLEEG 332
            + L  + +++  G      G+PS +  G
Sbjct: 213 VLCLTVAPLLVAGGSGRIGAGVPSAVPRG 241


>gi|149369606|ref|ZP_01889458.1| putative cytosine/adenosine deaminase [unidentified eubacterium
           SCB49]
 gi|149357033|gb|EDM45588.1| putative cytosine/adenosine deaminase [unidentified eubacterium
           SCB49]
          Length = 152

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 53/146 (36%), Gaps = 18/146 (12%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
            D  FM  A + +      +     +  +IV D  +I R      T      HAE+QA+ 
Sbjct: 9   DDTYFMKRAFQEAETA--YSQGEIPIGAVIVADNKIIARAHNLTETLNDVTAHAEMQAIT 66

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A     G+  +G T YVT+EPC        CA  +    I  VV    D + R      
Sbjct: 67  AAANYLGGKYLKGCTLYVTIEPC------QMCAGALYWSQISNVVYGARD-EQRGCLEMG 119

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYL 142
             L  K  +   ++  E    L  + 
Sbjct: 120 TKLHPKTKMTGGVLAEECATLLKRFF 145


>gi|66044515|ref|YP_234356.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae pv. syringae B728a]
 gi|63255222|gb|AAY36318.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae pv. syringae B728a]
          Length = 169

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 15/102 (14%)

Query: 30  SVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  ++V++G +IGRG            HAE+ A+ +A +        G+T YVTLEPCS
Sbjct: 33  PVGAVVVQNGEIIGRGYNCPISGSDPSAHAEMVAIRDAAKALDNYRLPGSTLYVTLEPCS 92

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                  CA  I+   + RVV    +P   +     Q+ SQ 
Sbjct: 93  M------CAGLIVHSRVARVVYGALEPKAGIVQSQGQFFSQA 128


>gi|297539076|ref|YP_003674845.1| CMP/dCMP deaminase zinc-binding protein [Methylotenera sp. 301]
 gi|297258423|gb|ADI30268.1| CMP/dCMP deaminase zinc-binding protein [Methylotenera sp. 301]
          Length = 162

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 59/152 (38%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
           + D  +M   +  +       +    V  +IVKDG+VIGRG  +    +    HAE+ AL
Sbjct: 12  TADEHYMQ--IALALAQEAAAAGEVPVGAIIVKDGVVIGRGGNSPIDTHDPTAHAEIAAL 69

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A +        G + YVTLEPC+       C   I    I R+V   +DP     G  
Sbjct: 70  RDAAKNLGNYRLVGCSLYVTLEPCAM------CTGAIQHARIARLVYGANDPKTGACGSV 123

Query: 116 LQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
           +       L+    +    +  E    L  + 
Sbjct: 124 VNLMAEPKLNHHTEVFSGELAKECGAMLSEFF 155


>gi|62185341|ref|YP_220126.1| putative cytidine/deoxycytidylate deaminase family protein
           [Chlamydophila abortus S26/3]
 gi|62148408|emb|CAH64175.1| putative cytidine/deoxycytidylate deaminase family protein
           [Chlamydophila abortus S26/3]
          Length = 157

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 47/127 (37%), Gaps = 17/127 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
             D  FM+ AL+ +R           V C+IVKD  +I RG            HAE+  +
Sbjct: 4   EKDIFFMNQALKEARQA--YDEDEVPVGCVIVKDNKIIARGHNTTEKLQDPTAHAEILCI 61

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A +            Y TLEPC        CA  I    IRR+V    D  +   G  
Sbjct: 62  GAAAQYLENWRLVDTVLYCTLEPCLM------CAGAIQLARIRRIVWAAPDLRLGAGGSW 115

Query: 116 LQWLSQK 122
           L    +K
Sbjct: 116 LNVFKEK 122


>gi|330968078|gb|EGH68338.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 169

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 59/154 (38%), Gaps = 22/154 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
           S D  FM      +    G       V  ++V++G +IGRG            HAE+ A+
Sbjct: 10  SNDQHFMRE--ALALAAQGALRGEVPVGAVVVQNGEIIGRGYNCPISGSDPSAHAEMVAI 67

Query: 61  EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A          G+T YVTLEPCS       CA  I+   + RVV    +P   +    
Sbjct: 68  RDAARALDNYRLPGSTLYVTLEPCSM------CAGLIVHSRVARVVYGALEPKAGIVQSQ 121

Query: 116 LQ-----WLSQKGIIVDRMMESEGKIFLHAYLTR 144
            Q     +L+ + +    ++  E    L  +   
Sbjct: 122 GQFFSQGFLNHRVLFEGGVLGEECGAMLSEFFRM 155


>gi|326470308|gb|EGD94317.1| tRNA-specific adenosine deaminase subunit Tad2p/ADAT2 [Trichophyton
           tonsurans CBS 112818]
 gi|326481147|gb|EGE05157.1| cytidine and deoxycytidylate deaminase [Trichophyton equinum CBS
           127.97]
          Length = 189

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 61/167 (36%), Gaps = 26/167 (15%)

Query: 1   MPVSSFDARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
           M   S    FM  AL+ +     VG T     V C++V    VIG G+        G  H
Sbjct: 4   MSNLSKHEVFMKMALKMAETALAVGET----PVGCVLVNKDRVIGSGMNDTNKSLNGTRH 59

Query: 55  AEVQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AE  A+EEA         R    YVT+EPC        CA  + +  IR V     +   
Sbjct: 60  AEFLAIEEALRSYPRSIFRETDLYVTVEPCIM------CASALRQYQIRSVYFGCANERF 113

Query: 110 RVSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSH 151
             +G  L   S   I     +   +   E  + L  +  ++ E   +
Sbjct: 114 GGTGGVLTLHSDPAIDQPYPVYGGIYRKEAIMLLRKFYVQENENAPN 160


>gi|315502712|ref|YP_004081599.1| bifunctional deaminase-reductase domain protein [Micromonospora sp.
           L5]
 gi|315409331|gb|ADU07448.1| bifunctional deaminase-reductase domain protein [Micromonospora sp.
           L5]
          Length = 267

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 79/223 (35%), Gaps = 17/223 (7%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD---DPE 206
            H+ +    S D  + +    S  ++G   K    LLR   D ++V  GT+  +      
Sbjct: 34  PHLRVNFVASADGAVTL-DGYSAGLSGEPDKRVFGLLRMLCDGLVVAAGTLRHEGYRAVR 92

Query: 207 LTCRLNGLQEHS-----PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
           L+      +        P  +++     L         A + P+++   +  P   LA  
Sbjct: 93  LSPERRAWRREQGLAEFPTLVVVSGSLDLDPAQAAFADAPVRPIVLTHADAVPPPGLADV 152

Query: 262 KKNINI-----IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
              I             DL   L  L  RG+  LL EGG  +  +   + LVD + L  +
Sbjct: 153 ADVIRCGTDQADAPGRVDLVAGLAELRRRGLGQLLCEGGPHLFGALTAADLVDELCLTVA 212

Query: 317 QIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD--VCLEYIGK 357
            ++ G G       +  + ++   +R     +D  + L Y+  
Sbjct: 213 PLLAGAGPGRITAGDASVPRHL-PLRHVLAAADGVLMLRYVRD 254


>gi|189501687|ref|YP_001957404.1| hypothetical protein Aasi_0231 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497128|gb|ACE05675.1| hypothetical protein Aasi_0231 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 155

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 54/146 (36%), Gaps = 17/146 (11%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
            D  FM  AL+ +       +  P V  ++V +  +I +             HAE+ AL 
Sbjct: 13  DDEYFMRIALQEAMKA-YEVNEIP-VGAVVVSNNRIIAKAHNQVEKLKDATAHAEMLALS 70

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A     G+     T YVTLEPC        CA       + R+V    D  +     G 
Sbjct: 71  SAFSYIGGKYLPDCTLYVTLEPCLM------CASATFWSKLSRIVFSASDIRLGYRTFGT 124

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYL 142
             L  K  I   ++E E +  L ++ 
Sbjct: 125 NVLHPKTKIDAGILEQESQKVLQSFF 150


>gi|187478486|ref|YP_786510.1| zinc-binding cytidine/deoxycytidylate deaminase [Bordetella avium
           197N]
 gi|115423072|emb|CAJ49603.1| putative zinc-binding cytidine/deoxycytidylate deaminase
           [Bordetella avium 197N]
          Length = 157

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 53/153 (34%), Gaps = 23/153 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQA 59
             D  +M  AL  +R           V  ++V  +G V+G G            HAEV A
Sbjct: 3   DADEIYMHMALEQARLA--YDQGEVPVGAVVVDGEGRVLGAGYNRTILDSDPTAHAEVMA 60

Query: 60  LEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           L  A          G T YVTLEPC        C   ++   + RVV    DP     G 
Sbjct: 61  LRAASRHLANYRLPGLTLYVTLEPC------VMCIGAMLHARLTRVVFGAHDPKTGACGS 114

Query: 115 GLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
            L       L+    +V  ++       L A+ 
Sbjct: 115 VLDVGAVAQLNHHTTVVGGVLAPPCGDLLRAFF 147


>gi|34540529|ref|NP_905008.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
           gingivalis W83]
 gi|188994633|ref|YP_001928885.1| putative cytosine/adenosine deaminase [Porphyromonas gingivalis
           ATCC 33277]
 gi|34396842|gb|AAQ65907.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
           gingivalis W83]
 gi|188594313|dbj|BAG33288.1| putative cytosine/adenosine deaminase [Porphyromonas gingivalis
           ATCC 33277]
          Length = 150

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 56/150 (37%), Gaps = 17/150 (11%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57
             ++ D R+M  AL  +R           +  +IV  G ++ R             HAE+
Sbjct: 5   TFATDDIRYMRIALEEARAAA--DEGEIPIGAVIVCKGQIVARAHNRVERLNDPTAHAEM 62

Query: 58  QALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+  A     G+  R  T YVT+EPC        CA  +    I RVV    +P V   
Sbjct: 63  LAITMAVDAIGGKYLRDCTLYVTVEPCLM------CAGALRWTQIPRVVYGASEPKVGYR 116

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
                 L  K  +   ++  E +  + ++ 
Sbjct: 117 LFTDHALHPKCHVEGGILADESENLMRSFF 146


>gi|330969043|gb|EGH69109.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 169

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 15/102 (14%)

Query: 30  SVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  ++V++G ++GRG            HAE+ A+ +A +        G+T YVTLEPCS
Sbjct: 33  PVGAVVVQNGEIVGRGYNCPISGSDPSAHAEMVAIRDAAKALDNYRLPGSTLYVTLEPCS 92

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                  CA  I+   + RVV    +P   +     Q+ SQ 
Sbjct: 93  M------CAGLIVHSRVTRVVYGALEPKAGIVQSQGQFFSQA 128


>gi|294643957|ref|ZP_06721744.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides ovatus SD CC 2a]
 gi|294807647|ref|ZP_06766440.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides xylanisolvens SD CC 1b]
 gi|292640729|gb|EFF58960.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides ovatus SD CC 2a]
 gi|294445083|gb|EFG13757.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 293

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 10/127 (7%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
            +S+ D   M  A+         +   P V  +I KDGI++ +         HAE  A+E
Sbjct: 30  KLSNVDL--MKIAIE--EQSKCTSF--PKVGAVIAKDGIILAKAFKDEESSKHAERIAIE 83

Query: 62  EAGEE-ARGATAYVTLEPCSHYGRSPP---CAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           +  +    GAT   TLEPC +   + P   C   IIE GI+ V++ + DP+  +  +G +
Sbjct: 84  KLDKSTLNGATLVTTLEPCINIANNQPLQSCTDLIIESGIKDVIIGILDPNGAIYCQGYE 143

Query: 118 WLSQKGI 124
            L +  I
Sbjct: 144 KLLENNI 150


>gi|237716221|ref|ZP_04546702.1| CMP/dCMP deaminase [Bacteroides sp. D1]
 gi|262407829|ref|ZP_06084377.1| CMP/dCMP deaminase [Bacteroides sp. 2_1_22]
 gi|229443868|gb|EEO49659.1| CMP/dCMP deaminase [Bacteroides sp. D1]
 gi|262354637|gb|EEZ03729.1| CMP/dCMP deaminase [Bacteroides sp. 2_1_22]
          Length = 276

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 10/127 (7%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
            +S+ D   M  A+         +   P V  +I KDGI++ +         HAE  A+E
Sbjct: 13  KLSNVDL--MKIAIE--EQSKCTSF--PKVGAVIAKDGIILAKAFKDEESSKHAERIAIE 66

Query: 62  EAGEE-ARGATAYVTLEPCSHYGRSPP---CAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           +  +    GAT   TLEPC +   + P   C   IIE GI+ V++ + DP+  +  +G +
Sbjct: 67  KLDKSTLNGATLVTTLEPCINIANNQPLQSCTDLIIESGIKDVIIGILDPNGAIYCQGYE 126

Query: 118 WLSQKGI 124
            L +  I
Sbjct: 127 KLLENNI 133


>gi|242218661|ref|XP_002475119.1| predicted protein [Postia placenta Mad-698-R]
 gi|220725736|gb|EED79711.1| predicted protein [Postia placenta Mad-698-R]
          Length = 239

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 57/175 (32%), Gaps = 45/175 (25%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
            R ++TL  A S D  I   G   + ++G  S    H  R                    
Sbjct: 16  TRPYLTLTFAQSLDAKIAGPGGKQLALSGRESLTMTHWGRYHC----------------- 58

Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA----PVIIV---------TENDDP 254
                      P  IILD   +LS D K++K         P ++           E +  
Sbjct: 59  -----------PRPIILDSQLRLSPDCKLLKNYRAGTGRRPWVVCIGYEKKTEAQEKESN 107

Query: 255 VLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
               A R     ++          L  L+  L   G+ S++VEGGA V  SF+  
Sbjct: 108 QKKQALRLAGARVVDETGSKGLISLPMLMMSLSSMGIRSVMVEGGARVIQSFLAE 162


>gi|227894597|ref|ZP_04012402.1| nucleoside deaminase [Lactobacillus ultunensis DSM 16047]
 gi|227863588|gb|EEJ71009.1| nucleoside deaminase [Lactobacillus ultunensis DSM 16047]
          Length = 174

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 57/156 (36%), Gaps = 24/156 (15%)

Query: 3   VSSFDAR-FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAE 56
           +SS D + +M  A+  ++           +  +IV  DG VIG G            HAE
Sbjct: 7   LSSDDKKKYMQLAMDQAKIAEQQ--GEVPIGAVIVDPDGKVIGTGYNRRELDEDSTQHAE 64

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A++EA +          + +VTLEPC      P CA  II   I+ V     DP    
Sbjct: 65  MIAIKEACKNLGMWRLIDCSLFVTLEPC------PMCAGAIINSRIKDVYFGALDPKAGA 118

Query: 112 SGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
            G  +        +     +  +   +    L  + 
Sbjct: 119 CGSVVDLFTVDKFNHHPRAIRGLYRDQCAQMLKDFF 154


>gi|308474568|ref|XP_003099505.1| hypothetical protein CRE_01142 [Caenorhabditis remanei]
 gi|308266694|gb|EFP10647.1| hypothetical protein CRE_01142 [Caenorhabditis remanei]
          Length = 153

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 39/110 (35%), Gaps = 16/110 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
            FM  A+  ++  +      P    +IVKDG VIG G            HAEV A+ +A 
Sbjct: 2   EFMKLAIEEAKKGMAKGDGGP-FGAVIVKDGKVIGVGHNMVLVNKDPTAHAEVTAIRDAC 60

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           +     +  G   Y +  PC      P C    +   +  V       D 
Sbjct: 61  KNVDNFDLSGCQLYTSCYPC------PMCMGAALWSRVDAVYYGATSEDA 104


>gi|227328190|ref|ZP_03832214.1| tRNA-specific adenosine deaminase [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 158

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 54/146 (36%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEE 66
           M  AL  ++           V  ++V D   IG G     G      HAE+ AL + G+ 
Sbjct: 1   MRYALTLAQRAQ--DEGEVPVGAVLVLDNEAIGEGWNRPIGHHDPTAHAEIMALRQGGQV 58

Query: 67  ARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            +       T YVTLEPC        CA  +I   I R+V    D     +G  +  L  
Sbjct: 59  LQNYRLLETTLYVTLEPCIM------CAGAMIHSRIGRLVYGASDEKTGAAGSLVDILRH 112

Query: 122 KG-----IIVDRMMESEGKIFLHAYL 142
            G     +I   ++  E    L A+ 
Sbjct: 113 PGMNHQIVIESGILADECSATLSAFF 138


>gi|197117867|ref|YP_002138294.1| zinc-dependent cytosine deaminase [Geobacter bemidjiensis Bem]
 gi|197087227|gb|ACH38498.1| zinc-dependent cytosine deaminase [Geobacter bemidjiensis Bem]
          Length = 145

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 20/148 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQALEEAGE 65
           +M +A+  ++  +G       +  ++V  G+++GRG       G    H E+ ALE AG 
Sbjct: 4   YMQSAIEEAKKGLGEGG--IPIGSVLVHKGLILGRGHNRRVQKGSSILHGEMDALENAGR 61

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                 R +  Y TL PCS       C+  I+  GI RVV+  +           + L  
Sbjct: 62  LPAQVYRESVLYTTLSPCSM------CSGAILLYGIPRVVIGENSTFTGEE----ELLRS 111

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            G+ VD + + E    +  ++  + E  
Sbjct: 112 HGVQVDVLQDQECISLMRTFIEEKPELW 139


>gi|323465896|gb|ADX69583.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
           [Lactobacillus helveticus H10]
 gi|328462872|gb|EGF34721.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Lactobacillus helveticus MTCC 5463]
          Length = 168

 Score = 78.4 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 54/157 (34%), Gaps = 23/157 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHA 55
           M  S+   ++M  A+  ++           +  ++V  +G VIG G            HA
Sbjct: 1   MLSSADKKKYMELAIDQAKEAEKQ--GEVPIGAVVVDPEGKVIGTGYNRRELDEDSTQHA 58

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A++EA            + +VTLEPC      P CA  II   I+ V     DP   
Sbjct: 59  EMIAIKEACHNLGMWRLIDCSLFVTLEPC------PMCAGAIINSRIKDVYFGALDPKAG 112

Query: 111 VSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
             G  +              +  +   +    L  + 
Sbjct: 113 ACGSVVDLFEVEKFNHHPHSIRGLYRDQCAQMLKDFF 149


>gi|260906978|ref|ZP_05915300.1| deaminase-reductase domain-containing protein [Brevibacterium
           linens BL2]
          Length = 262

 Score = 78.4 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 12/173 (6%)

Query: 187 RAQSDAILVGIGTVLADD--PELTCRL-----NGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           RA +D ILVG GT   +D  P    R       G    +PM ++          S +   
Sbjct: 80  RALADVILVGAGTARIEDYGPAEDDRQWRHLRQGRTPTAPMAVV-SHSLDFDFSSPLFTA 138

Query: 240 AL-LAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGA 296
           A   A  I++T  D P  A A   +   +I       +L   +  LV RG+T ++ EGG 
Sbjct: 139 APDHARTIVITCADAPAQARAQAAEVAEVIVAGGSTVNLSAAIAELVSRGLTRIVCEGGP 198

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
            +    + +  VD + L RS +++   G  S L     +          +G+D
Sbjct: 199 RLFTDLLRTGDVDELSLTRSPMLVAGDGT-SILHGAQFDPPAELSLTSLYGTD 250


>gi|304383698|ref|ZP_07366157.1| tRNA-specific adenosine deaminase [Prevotella marshii DSM 16973]
 gi|304335222|gb|EFM01493.1| tRNA-specific adenosine deaminase [Prevotella marshii DSM 16973]
          Length = 160

 Score = 78.4 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 55/148 (37%), Gaps = 17/148 (11%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQA 59
           +  D  FM  AL  +            V  +IV  G ++ R      T +    HAE+QA
Sbjct: 17  TKTDEAFMRKALAEAEMA--FEEGEIPVGAIIVCKGRILSRAHNLTETLHDVTAHAEMQA 74

Query: 60  LEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           +  A     G+   G T YVT+EPC      P CA  +    + R+V    D        
Sbjct: 75  ITAAADALGGKYLTGCTLYVTVEPC------PMCAGALAWAQLSRIVYGASDTKRGYRLY 128

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYL 142
               L  K  ++  ++  E +  +  + 
Sbjct: 129 APDVLHPKTEVMGGILAEECRELMQRFF 156


>gi|255304952|ref|ZP_05349126.1| putative cytosine/adenosine deaminase [Clostridium difficile ATCC
           43255]
          Length = 151

 Score = 78.4 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 58/148 (39%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
            +M  AL+ +        T   +  +IVKD  +I R      T      HAE+ A+++A 
Sbjct: 5   FYMKEALKEAYKAYNKKET--PIGAIIVKDNQIIARAHNLTETLKDSTAHAEILAIKQAS 62

Query: 65  EEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           E+  G        YVT+EPC        C+  I+   I+++++           +  ++ 
Sbjct: 63  EKLGGWRLTDCDLYVTMEPCIM------CSGAIVNSRIKKLIIGTRHVKNSYIEKQHEFK 116

Query: 120 -----SQKGIIVDRMMESEGKIFLHAYL 142
                +    +   +++ E  I L  + 
Sbjct: 117 LDYFNNNNVKVAFDVLQEECSIMLQEFF 144


>gi|145629986|ref|ZP_01785768.1| hypothetical protein CGSHi22421_08043 [Haemophilus influenzae
           R3021]
 gi|144984267|gb|EDJ91690.1| hypothetical protein CGSHi22421_08043 [Haemophilus influenzae
           R3021]
          Length = 159

 Score = 78.4 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 57/167 (34%), Gaps = 23/167 (13%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHAEVQALEEAGE 65
           M  AL  +            V  ++V D G +IG G            HAE+ AL    +
Sbjct: 1   MRYALELADKAE--VLGEIPVGAVLVDDAGNIIGEGWNLSIVQSDPTAHAEIIALRNGAK 58

Query: 66  EARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ--- 117
             +      +T YVTLEPC        CA  I+   I+R+V    D      G       
Sbjct: 59  NIQNYRLLNSTLYVTLEPC------TMCAGAILHSRIKRLVFGASDYKTGAIGSRFHFFD 112

Query: 118 --WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
              ++    I   ++  E    L  +  ++ E++      +    D 
Sbjct: 113 DYKMNHTLEITSGVLAEECSQKLSTFFQKRREEKKIEKALLKSLSDK 159


>gi|294669183|ref|ZP_06734263.1| tRNA-specific adenosine deaminase [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308815|gb|EFE50058.1| tRNA-specific adenosine deaminase [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 246

 Score = 78.4 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 22/163 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P +   ARFM  AL          +    V  ++V++G V+               HAE+
Sbjct: 87  PPAEEAARFMQLALHQ--AEAAAAAGEVPVGAVVVRNGEVLSTAHNRCVADCDIGSHAEL 144

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           +AL EAG         G   Y+TLEPC+       CA  +I+  + RVV    +P    +
Sbjct: 145 RALAEAGRQTGSYRLDGCDVYITLEPCAM------CASALIQARVARVVYGAAEPKSGAA 198

Query: 113 GRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
           G  +       L++   +   ++  + +  L  +  ++   + 
Sbjct: 199 GSVVDLFSDGRLNKHTAVFGGILAEDCQAVLQHFFRQRRSSKP 241


>gi|332289514|ref|YP_004420366.1| tRNA-specific adenosine deaminase [Gallibacterium anatis UMN179]
 gi|330432410|gb|AEC17469.1| tRNA-specific adenosine deaminase [Gallibacterium anatis UMN179]
          Length = 153

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 57/149 (38%), Gaps = 23/149 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV----TAYGGCPHAEVQALEEAGE 65
           M  AL  +     +    P V  ++V + G ++  G     T      HAE+ AL +AG+
Sbjct: 1   MQYALALADNAA-MMGEIP-VGAVLVDEQGNIVAEGWNQSITLSDPTAHAEIMALRQAGQ 58

Query: 66  EAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-- 118
           + +       T YVTLEPC      P CA  I+   I+R+V    D      G       
Sbjct: 59  KLQNYRLLNLTLYVTLEPC------PMCAGAILHSRIKRLVFGASDYKTGAIGSRFHLFE 112

Query: 119 ---LSQKGIIVDRMMESEGKIFLHAYLTR 144
              ++    I   ++  E    +  +  +
Sbjct: 113 DYRMNHIVEITAGVLAEECSAKISQFFQK 141


>gi|15893419|ref|NP_346768.1| cytosine deaminase [Clostridium acetobutylicum ATCC 824]
 gi|15022950|gb|AAK78108.1|AE007525_2 Cytosine deaminase [Clostridium acetobutylicum ATCC 824]
 gi|325507531|gb|ADZ19167.1| Cytosine deaminase [Clostridium acetobutylicum EA 2018]
          Length = 147

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 53/147 (36%), Gaps = 21/147 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA- 63
            F++ A++ ++           V  +IVKD  +I               HAE+ A+E A 
Sbjct: 4   EFLNEAIKEAKLAK--KEGEVPVGAVIVKDNKIIATSHNLKESLKNPSAHAEIIAIERAA 61

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                    G   YVTLEPC      P CA  I +  I +V V   DP     G  +   
Sbjct: 62  KYLNNWRLNGCEMYVTLEPC------PMCAACICQSRISKVYVGTFDPISGACGSVVNIT 115

Query: 120 S----QKGIIVDRMMESEGKIFLHAYL 142
                +    V+ +  +E    L  + 
Sbjct: 116 ENDYLRYHTEVEWLYSNECSDILKGFF 142


>gi|23097839|ref|NP_691305.1| hypothetical protein OB0384 [Oceanobacillus iheyensis HTE831]
 gi|22776063|dbj|BAC12340.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 159

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 43/122 (35%), Gaps = 25/122 (20%)

Query: 1   MPVSSFDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGC 52
           M  +     FMS A+  +        G          +I+KD  +I  G           
Sbjct: 1   MQTNPNHQLFMSKAIELAVSNISQGGG------PFGAVIIKDNKIIAEGTNQVTNYNDPT 54

Query: 53  PHAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
            HAEVQA+ +A E+      +G T Y + EPC      P C   I    +  V    +  
Sbjct: 55  AHAEVQAIRQACEKLSTFELKGCTLYTSCEPC------PMCLGAIYWARVDAVYYGANRK 108

Query: 108 DV 109
           D 
Sbjct: 109 DA 110


>gi|298488260|ref|ZP_07006293.1| tRNA-specific adenosine-34 deaminase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157199|gb|EFH98286.1| tRNA-specific adenosine-34 deaminase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 169

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 20/129 (15%)

Query: 30  SVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            V  ++V++G +IGRG      A     HAE+ A+ +A          G+T YVTLEPCS
Sbjct: 33  PVGAVVVQNGEIIGRGYNCPISASDPSAHAEMVAIRDAARALDNYRLSGSTLYVTLEPCS 92

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  CA  I+   + RVV    +P   +     Q     +L+ + +    ++  E  
Sbjct: 93  M------CAGLIVHSRVARVVYGALEPKAGIVQSQGQFFSQGFLNHRVLFEGGVLGEECG 146

Query: 136 IFLHAYLTR 144
             L  +   
Sbjct: 147 AMLSEFFRM 155


>gi|152992774|ref|YP_001358495.1| cytidine/deoxycytidylate deaminase family protein [Sulfurovum sp.
           NBC37-1]
 gi|151424635|dbj|BAF72138.1| cytidine/deoxycytidylate deaminase family protein [Sulfurovum sp.
           NBC37-1]
          Length = 153

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 40/109 (36%), Gaps = 16/109 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           FM  A   ++  +      P    +IVKDG +I  G            HAE+ A+  A  
Sbjct: 4   FMREAFLEAKRGIEAGDGGP-FGAVIVKDGKIIASGHNEVVKTNDPTAHAEMIAIRNASA 62

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
                +  G T YVT EPC      P C   I    I RV  C    D 
Sbjct: 63  KLQNFKLEGCTLYVTGEPC------PMCFSAIHWAHIERVYYCNTKEDA 105


>gi|126662495|ref|ZP_01733494.1| putative cytosine/adenosine deaminase [Flavobacteria bacterium
           BAL38]
 gi|126625874|gb|EAZ96563.1| putative cytosine/adenosine deaminase [Flavobacteria bacterium
           BAL38]
          Length = 146

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 57/145 (39%), Gaps = 18/145 (12%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
           D  FM  AL+ +            V  +IV D  VI R        +    HAE+QA+  
Sbjct: 7   DDYFMKKALQEAETA--FEKGEIPVGAVIVIDNKVIARTHNLTELLHDVTAHAEMQAITS 64

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G+  +  T YVTLEPC        CA  +    I ++V    D + R   +   
Sbjct: 65  AANFLGGKYLKDCTLYVTLEPCQM------CAGALYWSQISKIVFGASDEN-RGFQKMGT 117

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYL 142
            L  K  ++  ++E E    + ++ 
Sbjct: 118 QLHPKTQVISGVLEKECADLMKSFF 142


>gi|113461754|ref|YP_719823.1| tRNA-adenosine deaminase [Haemophilus somnus 129PT]
 gi|112823797|gb|ABI25886.1| tRNA-adenosine deaminase [Haemophilus somnus 129PT]
          Length = 158

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 61/164 (37%), Gaps = 23/164 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAEVQALEEAG 64
            M  AL  +     L      V  ++V K G ++  G            HAE+ AL +AG
Sbjct: 1   MMRYALSLADKAEAL--GEIPVGAVLVDKQGDILAEGWNLSIIHNDPTAHAEIIALRQAG 58

Query: 65  EEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           ++ +       T YVTLEPC        CA  I+   I R+V    D      G    + 
Sbjct: 59  QKLQNYRLLDTTLYVTLEPC------TMCAGAILHSRIGRLVFGAYDYKTGAVGSRFHFF 112

Query: 120 SQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAV 158
           +   +     I   +++ E    +  +  ++ +++ H+      
Sbjct: 113 NDYKMNHILEITGGVLQEECSQKISVFFQKRRKQKKHLKPNFKP 156


>gi|330971095|gb|EGH71161.1| cytosine deaminase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 145

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 20/148 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGE 65
           FM AA   ++  +GL      +  +IV  G +IGRG            H E+ ALE AG 
Sbjct: 4   FMQAAFDEAQ--LGLKEGGIPIGSVIVHGGKIIGRGHNRRVQEGSATKHGEMDALENAGR 61

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +     R +  Y TL PC+       C+  I+  GIR+V++   +  +       + L  
Sbjct: 62  QPASVYRDSVLYTTLSPCAM------CSGAILLYGIRKVIIGEHESFMGEE----ELLRS 111

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           +G+ ++ +   E    +  ++  + E  
Sbjct: 112 RGVQIEVLDNPECTHMMKDFIASKPELW 139


>gi|288802991|ref|ZP_06408427.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
           melaninogenica D18]
 gi|302345191|ref|YP_003813544.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella melaninogenica ATCC 25845]
 gi|288334508|gb|EFC72947.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
           melaninogenica D18]
 gi|302149710|gb|ADK95972.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella melaninogenica ATCC 25845]
          Length = 150

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 54/150 (36%), Gaps = 17/150 (11%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
            S  D  FM  AL  +          P +  ++V    +I R      T      HAE+Q
Sbjct: 6   QSKKDLYFMQRALAEAE-AAYKEGEIP-IGAVVVCRDRIIARAHNLTETLNDVTAHAEMQ 63

Query: 59  ALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+  A     G+  +  T YVT+EPC        CA  I    ++R+V    D       
Sbjct: 64  AITMAANELGGKYLQDCTLYVTVEPCIM------CAGAIGWAQLQRIVYGCPDEKRGYHE 117

Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLT 143
              +    K  +   +ME E +  +  +  
Sbjct: 118 YAPKAFHPKANVTYGVMEEECRALMQRFFQ 147


>gi|29840517|ref|NP_829623.1| cytidine/deoxycytidylate deaminase family protein [Chlamydophila
           caviae GPIC]
 gi|29834866|gb|AAP05501.1| cytidine/deoxycytidylate deaminase family protein [Chlamydophila
           caviae GPIC]
          Length = 157

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 50/147 (34%), Gaps = 21/147 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
             D  FM+ AL+ +R           V C+IVKD  +I RG            HAE+  +
Sbjct: 4   EKDIFFMNQALKEARQA--YDQDEVPVGCVIVKDNKIIARGHNTTEKFQDPTAHAEILCI 61

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A +            Y TLEPC        CA  I    IRR+V    D  +   G  
Sbjct: 62  GAAAQYLENWRLVDTVLYCTLEPCLM------CAGAIQLARIRRIVWAAPDLRLGAGGSW 115

Query: 116 LQWLSQ----KGIIVDRMMESEGKIFL 138
           +   +       +     +  E    L
Sbjct: 116 INVFTAKHPFHQVECFSGICREESEQL 142


>gi|330985033|gb|EGH83136.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 169

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 20/129 (15%)

Query: 30  SVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  ++V++G +IGRG      A     HAE+ A+ +A          G+T YVTLEPCS
Sbjct: 33  PVGAVVVQNGEIIGRGYNCPISASDPSAHAEMVAIRDAASALDNYRLPGSTLYVTLEPCS 92

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  CA  I+   + RVV    +P   +     Q     +L+ + +    ++  E  
Sbjct: 93  M------CAGLIVHSRVARVVYGALEPKAGIVQSQGQFFSQGFLNHRVLFEGGVLSEECG 146

Query: 136 IFLHAYLTR 144
             L  +   
Sbjct: 147 AMLSEFFRM 155


>gi|294815697|ref|ZP_06774340.1| Bifunctional deaminase-reductase domain-containing protein
           [Streptomyces clavuligerus ATCC 27064]
 gi|294328296|gb|EFG09939.1| Bifunctional deaminase-reductase domain-containing protein
           [Streptomyces clavuligerus ATCC 27064]
          Length = 281

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 63/180 (35%), Gaps = 12/180 (6%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD------- 203
            +   +  S D         S P++          LRA +DA++VG  TV  +       
Sbjct: 64  WLRANMVSSLDG-AAQHEGRSQPLSSDADMRIFGTLRALADAVVVGAETVRREGYRPARA 122

Query: 204 -DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
            +     R    Q  +P   ++     L     +    L+  +++      P       +
Sbjct: 123 REAFAARRRAAGQGPAPAIAVVSASLALDFSLPLFTEPLVPTLVLTGAAAPPERLREAER 182

Query: 263 KNINIIYCD---CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
             + ++        +    + +L  +G+  LL EGG  +   F+ + ++D + L  S  V
Sbjct: 183 AGVRVLIAGEGRGVEPATAVRVLAEQGLRRLLTEGGPRLLGHFMAAGVLDELCLTLSPTV 242


>gi|237798885|ref|ZP_04587346.1| cytosine deaminase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021739|gb|EGI01796.1| cytosine deaminase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 145

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 20/148 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGE 65
           FM AA   ++   G       +  +IV DG +IGRG            H E+ ALE AG 
Sbjct: 4   FMRAAFEEAQ--HGQEEGGIPIGSVIVHDGKIIGRGRNRRVQNASATLHGEMDALENAGR 61

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +     R A  Y TL PC+       C+  I+  GIR+V+V  +   +         L  
Sbjct: 62  QPASVYREAVLYTTLSPCAM------CSGAILLYGIRKVIVGENQSFMGEE----DLLRS 111

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           +G+ +D + ++  K  +  ++  + +  
Sbjct: 112 RGVQIDVLDDAACKHMMQNFINNKPDLW 139


>gi|254424317|ref|ZP_05038035.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Synechococcus sp. PCC 7335]
 gi|196191806|gb|EDX86770.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Synechococcus sp. PCC 7335]
          Length = 248

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 76/213 (35%), Gaps = 26/213 (12%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA---- 202
             R  IT+ +A+S D  I  A   +        K  +    A++DA L G GT+ A    
Sbjct: 9   FNRPRITVVLAMSADGKITDASRAAARFPSVADKAHLEAQIAKADATLFGAGTLRAYGTT 68

Query: 203 ---DDPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
               +  L   R +  Q   P++I+      L       +   +   +I T         
Sbjct: 69  LPVTNATLIADRRSRQQPDQPIQIVCSAIGNLDPGWPFFQQP-VPRWLITTLEGMQSWRE 127

Query: 259 AFRKKNIN------IIYCDCRDLKKLLTIL----------VGRG-VTSLLVEGGAAVAHS 301
             + K+I       +I     +   ++  L            R  + +L+V GG  +  S
Sbjct: 128 GRKGKDIERPFEHVLITERPFNWHVVMQDLLCGKSALSSAADRPAIQNLVVMGGGELVAS 187

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
            ++  L+D + L    ++IG    P+P+     
Sbjct: 188 LLSDGLIDDLYLTVCPLLIGGKTAPTPVGGLGF 220


>gi|330807694|ref|YP_004352156.1| deaminase [Pseudomonas brassicacearum subsp. brassicacearum NFM421]
 gi|327375802|gb|AEA67152.1| putative deaminase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 165

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 52/112 (46%), Gaps = 16/112 (14%)

Query: 30  SVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  ++V+DG +IGRG       +    HAE+ A+  A +        G+T YVTLEPCS
Sbjct: 36  PVGAVLVQDGEIIGRGFNCPISGHDPSAHAEMVAIRAAAQAVSNYRLPGSTLYVTLEPCS 95

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
                  CA  I+   I RVV    +P   +     Q+ SQ G +  R+M  
Sbjct: 96  M------CAGLIVHSRIARVVYGALEPKAGIVQSQGQFFSQ-GFLNHRVMYE 140


>gi|145637247|ref|ZP_01792908.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
          PittHH]
 gi|145269499|gb|EDK09441.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
          PittHH]
          Length = 60

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 1  MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG 50
          +  SS D  FM  AL  +      T+ NPSV C++VK+G ++G+      
Sbjct: 2  LEFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGKAFILRQ 51


>gi|307825441|ref|ZP_07655660.1| CMP/dCMP deaminase zinc-binding [Methylobacter tundripaludum SV96]
 gi|307733616|gb|EFO04474.1| CMP/dCMP deaminase zinc-binding [Methylobacter tundripaludum SV96]
          Length = 142

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 55/146 (37%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEE 66
           M  A+R ++           V  ++V+D   I  G     T++    HAEV A+  AG  
Sbjct: 1   MRHAIRLAQRAEQQ--GEVPVGAIVVRDNRCIAEGWNIPITSHDPTAHAEVVAMRGAGVH 58

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW--- 118
            +      AT YVTLEPC        C   +    I+R+V    DP        L     
Sbjct: 59  VQNYRLNDATLYVTLEPC------VMCIGAMSHARIKRLVFGAYDPKRGAVCNALSLTDA 112

Query: 119 --LSQKGIIVDRMMESEGKIFLHAYL 142
             L+ +      ++E+E    L  + 
Sbjct: 113 PFLNHRISWDGGVLETECSEMLRDFF 138


>gi|227903275|ref|ZP_04021080.1| nucleoside deaminase [Lactobacillus acidophilus ATCC 4796]
 gi|227869080|gb|EEJ76501.1| nucleoside deaminase [Lactobacillus acidophilus ATCC 4796]
          Length = 231

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 25/157 (15%)

Query: 3   VSSFDAR--FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHA 55
           + S D +  +M  A+  ++           +  ++V   G +IG G            HA
Sbjct: 64  MLSSDEKKTYMQLAIDKAKEAEKQ--GEVPIGAVVVDPTGKIIGTGYNRRELDEDSTQHA 121

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A++EA +          + +VTLEPC      P CA  II   I+ V     DP   
Sbjct: 122 EMIAIKEACKNLGMWRLIDCSLFVTLEPC------PMCAGAIINSRIKDVYFGALDPKAG 175

Query: 111 VSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
             G  +   +          +  +   +    L  + 
Sbjct: 176 ACGSVVDLFAVERFNHHPHAIRGLYRDQCAQMLKDFF 212


>gi|326444043|ref|ZP_08218777.1| hypothetical protein SclaA2_23394 [Streptomyces clavuligerus ATCC
           27064]
          Length = 275

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 63/180 (35%), Gaps = 12/180 (6%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD------- 203
            +   +  S D         S P++          LRA +DA++VG  TV  +       
Sbjct: 58  WLRANMVSSLDG-AAQHEGRSQPLSSDADMRIFGTLRALADAVVVGAETVRREGYRPARA 116

Query: 204 -DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
            +     R    Q  +P   ++     L     +    L+  +++      P       +
Sbjct: 117 REAFAARRRAAGQGPAPAIAVVSASLALDFSLPLFTEPLVPTLVLTGAAAPPERLREAER 176

Query: 263 KNINIIYCD---CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
             + ++        +    + +L  +G+  LL EGG  +   F+ + ++D + L  S  V
Sbjct: 177 AGVRVLIAGEGRGVEPATAVRVLAEQGLRRLLTEGGPRLLGHFMAAGVLDELCLTLSPTV 236


>gi|300724136|ref|YP_003713453.1| TadA, tRNA -specific adenosine deaminase [Xenorhabdus nematophila
           ATCC 19061]
 gi|297630670|emb|CBJ91335.1| TadA, tRNA-specific adenosine deaminase [Xenorhabdus nematophila
           ATCC 19061]
          Length = 170

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 22/157 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  +M      +            V  ++V D  ++  G     T +    HAE+ AL +
Sbjct: 13  DEYWMRR--AMALAMQAQAQGEIPVGAILVADNEILAEGFNLPITYHDPTAHAEIIALRQ 70

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            G   +       T YVTLEPC        CA  ++   I+R+V    D     +G  + 
Sbjct: 71  GGSRLQNYRLLNTTLYVTLEPC------VMCAGAMVHSRIKRLVYGASDMKTGAAGSLID 124

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKR 149
            L   G+     I+  ++  E    L ++  ++ E+ 
Sbjct: 125 ILRHPGMNHQIEIIGGVLAEECSTMLSSFFKQRREQH 161


>gi|327394833|dbj|BAK12255.1| tRNA-specific adenosine deaminase TadA [Pantoea ananatis AJ13355]
          Length = 98

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 11/89 (12%)

Query: 5  SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
            D  +M  AL  ++           V  ++V+   VIG G     G      HAE+ AL
Sbjct: 11 EQDEYWMRRALTLAQRAW--EQGEVPVGAVLVQGDRVIGEGWNRPIGQHDPTAHAEIMAL 68

Query: 61 EEAGEEAR-----GATAYVTLEPCSHYGR 84
           + G+          T YVTLEPC     
Sbjct: 69 RQGGKVLENYRLLNTTLYVTLEPCIMCAG 97


>gi|51245291|ref|YP_065175.1| hypothetical protein DP1439 [Desulfotalea psychrophila LSv54]
 gi|50876328|emb|CAG36168.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 166

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 17/128 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQ 58
           + + DA +M  AL  +       +    V  ++V+DG +I  G    +T      HAE+ 
Sbjct: 6   IEARDALWMGYALDEAARAG--ANGEVPVGAVLVQDGELIATGLNGMITHNDPSAHAEIV 63

Query: 59  ALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL +AG+         AT YVTLEPC        C   II+  I+R+V    D     +G
Sbjct: 64  ALRQAGQVLNNYRFPEATLYVTLEPCIM------CMGAIIQARIKRLVFAAFDTKTGAAG 117

Query: 114 RGLQWLSQ 121
                   
Sbjct: 118 SLYDIGRD 125


>gi|115352007|ref|YP_773846.1| CMP/dCMP deaminase [Burkholderia ambifaria AMMD]
 gi|115281995|gb|ABI87512.1| tRNA-adenosine deaminase [Burkholderia ambifaria AMMD]
          Length = 193

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 57/155 (36%), Gaps = 22/155 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEV 57
           PVS+ D  FM   L  +       +    V  ++V    VI RG     G      HAE+
Sbjct: 26  PVSARDLHFMR--LAQAAAEEARAAGEVPVGAVLVCGDEVIARGFNHPIGGHDPSAHAEM 83

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL  A +  +     G   YVTLEPC        CA  I+   I RVV    DP     
Sbjct: 84  AALRMAAQHLQNYRMPGCELYVTLEPCLM------CAGAIMHARIARVVYGAADPKTGAC 137

Query: 113 GRGLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
           G  +       L+    +   ++  E    L ++ 
Sbjct: 138 GSVIDAFANPQLNHHTEVTGGVLADECGAALKSFF 172


>gi|254393143|ref|ZP_05008301.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Streptomyces
           clavuligerus ATCC 27064]
 gi|197706788|gb|EDY52600.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Streptomyces
           clavuligerus ATCC 27064]
          Length = 275

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 63/180 (35%), Gaps = 12/180 (6%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD------- 203
            +   +  S D         S P++          LRA +DA++VG  TV  +       
Sbjct: 58  WLRANMVSSLDG-AAQHEGRSQPLSSDADMRIFGTLRALADAVVVGAETVRREVYRPARA 116

Query: 204 -DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
            +     R    Q  +P   ++     L     +    L+  +++      P       +
Sbjct: 117 REAFAARRRAAGQGPAPAIAVVSASLALDFSLPLFTEPLVPTLVLTGAAAPPERLREAER 176

Query: 263 KNINIIYCD---CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
             + ++        +    + +L  +G+  LL EGG  +   F+ + ++D + L  S  V
Sbjct: 177 AGVRVLIAGEGRGVEPATAVRVLAEQGLRRLLTEGGPRLLGHFMAAGVLDELCLTLSPTV 236


>gi|332666401|ref|YP_004449189.1| CMP/dCMP deaminase zinc-binding protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332335215|gb|AEE52316.1| CMP/dCMP deaminase zinc-binding protein [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 148

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 51/147 (34%), Gaps = 17/147 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           D  FM  AL+ ++           V  +I  +  +I RG            HAE+ ++  
Sbjct: 7   DEYFMQEALKEAQLA--FEEGEIPVGAVIACENRIIARGHNTTEKLLDVTAHAEILSITA 64

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A            T YVTLEPC+       CA  I    + R+V    D        G +
Sbjct: 65  ASNYLNSKYLPDCTLYVTLEPCNM------CAGAIFWAQMGRLVYGAGDEKRGFMRIGKE 118

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTR 144
            L  K  +   ++  E    L  +  +
Sbjct: 119 LLHPKTTLEYGVLHEECSQLLKEFFQK 145


>gi|257783881|ref|YP_003179098.1| CMP/dCMP deaminase zinc-binding [Atopobium parvulum DSM 20469]
 gi|257472388|gb|ACV50507.1| CMP/dCMP deaminase zinc-binding [Atopobium parvulum DSM 20469]
          Length = 166

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 22/155 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57
           P ++ D ++M  AL  +     +      +  ++V  G V+               HAE 
Sbjct: 11  PQAALDQKYMKLALEQAELAAQI--GEVPIGAVVVCGGEVVAVAHNRREIDNDPSAHAEF 68

Query: 58  QALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+++A ++       G T YVTLEPC        CA  ++   I R V    DP    +
Sbjct: 69  LAMQKASKKLGRWRLSGCTVYVTLEPCLM------CAGLMVNARIDRCVFGAFDPKGGAT 122

Query: 113 GRGLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
           G          L+ +  ++  ++  E    L A+ 
Sbjct: 123 GTLFDVSSDSRLNHEFAVLGGVLAEEASAQLKAFF 157


>gi|39995176|ref|NP_951127.1| cytidine/deoxycytidylate deaminase family protein [Geobacter
           sulfurreducens PCA]
 gi|39981938|gb|AAR33400.1| cytidine/deoxycytidylate deaminase family protein [Geobacter
           sulfurreducens PCA]
 gi|307634647|gb|ADI82903.2| tRNA (adenosine-34) deaminase [Geobacter sulfurreducens KN400]
          Length = 179

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 52/127 (40%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
            +  +IV+DG VIGRG     G      HAE+ A+ +A   +      GAT YVTLEPC 
Sbjct: 33  PIGAVIVRDGAVIGRGHNLREGSNDPSAHAEMIAIRQAARRSANWRLTGATLYVTLEPCL 92

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGK 135
                  C   II   + RVV    DP    +G          L+ +  +   + + E  
Sbjct: 93  M------CMGAIILARLERVVFGCYDPKGGAAGSLYDLSADPRLNHQVRLSPGVCQEECG 146

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 147 TMLSDFF 153


>gi|213969586|ref|ZP_03397722.1| cytosine deaminase [Pseudomonas syringae pv. tomato T1]
 gi|301383360|ref|ZP_07231778.1| cytosine deaminase [Pseudomonas syringae pv. tomato Max13]
 gi|302058808|ref|ZP_07250349.1| cytosine deaminase [Pseudomonas syringae pv. tomato K40]
 gi|302134497|ref|ZP_07260487.1| cytosine deaminase [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213925682|gb|EEB59241.1| cytosine deaminase [Pseudomonas syringae pv. tomato T1]
          Length = 145

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 20/140 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGE 65
           FM AA+  ++  +GL      +  +IV  G +IGRG            H E+ ALE AG 
Sbjct: 4   FMQAAIDEAQ--LGLDEGGIPIGSVIVHAGKIIGRGHNRRVQEGSATRHGEMDALENAGR 61

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +     R A  Y TL PC+       C+  I+  GIR+V+V  +   +       + L  
Sbjct: 62  QPASVYREAVLYTTLSPCAM------CSGAILLYGIRKVIVGENHSFMGEE----ELLRS 111

Query: 122 KGIIVDRMMESEGKIFLHAY 141
           +G+ ++ +     K  +  +
Sbjct: 112 RGVQIEVLDNERCKHMMQGF 131


>gi|28377565|ref|NP_784457.1| cytosine/adenosine deaminase [Lactobacillus plantarum WCFS1]
 gi|254555738|ref|YP_003062155.1| cytosine/adenosine deaminase [Lactobacillus plantarum JDM1]
 gi|300769759|ref|ZP_07079641.1| possible guanine deaminase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|28270397|emb|CAD63300.1| cytosine/adenosine deaminase [Lactobacillus plantarum WCFS1]
 gi|254044665|gb|ACT61458.1| cytosine/adenosine deaminase [Lactobacillus plantarum JDM1]
 gi|300492667|gb|EFK27853.1| possible guanine deaminase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 168

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 44/123 (35%), Gaps = 17/123 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
             +M  AL  +R    +      +  +IV  G +IGRG            HAE+ A++EA
Sbjct: 7   EDWMQEALHEARMAYLI--GEVPIGAVIVHQGEIIGRGHNLREHGQDATMHAEIIAIQEA 64

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            E            YVTLEPC        C+  II   +  +     DP         Q 
Sbjct: 65  CEYLHSWRLADCQLYVTLEPCLM------CSGAIINARLPELYFGARDPKAGAVRSLYQV 118

Query: 119 LSQ 121
           +  
Sbjct: 119 MDD 121


>gi|297191291|ref|ZP_06908689.1| bifunctional deaminase-reductase domain-containing protein
           [Streptomyces pristinaespiralis ATCC 25486]
 gi|197718422|gb|EDY62330.1| bifunctional deaminase-reductase domain-containing protein
           [Streptomyces pristinaespiralis ATCC 25486]
          Length = 273

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 60/180 (33%), Gaps = 12/180 (6%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD------- 203
            +   +  S D         S PI+          LR  +DA++VG  TV  +       
Sbjct: 56  WLRANMVSSLDG-AAQHDGRSQPISSDADMRIFGTLRGLADAVVVGAETVRTEGYRPARA 114

Query: 204 -DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
            D     R    Q  +P   ++     L     +    L+  +++      P       +
Sbjct: 115 RDVFAERRAAAGQGPAPAIAVVSASLNLDFSLPLFTEPLVPTLVLTGAAASPERVREAER 174

Query: 263 KNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
               ++        +  + +  L  RG+  LL EGG  +   F  + ++D + L  S  +
Sbjct: 175 AGAEVVVAGDGPGVEPARAVHALAERGLVRLLTEGGPRMLGQFAAAGVLDELCLTVSPTM 234


>gi|296819611|ref|XP_002849875.1| tRNA specific adenosine deaminase [Arthroderma otae CBS 113480]
 gi|238840328|gb|EEQ29990.1| tRNA specific adenosine deaminase [Arthroderma otae CBS 113480]
          Length = 190

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 59/160 (36%), Gaps = 26/160 (16%)

Query: 8   ARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
             FM  AL+ +      G T     V C++V  G VIG G+        G  HAE  A+E
Sbjct: 12  EVFMKMALKMAETALAAGET----PVGCVLVNKGRVIGSGMNDTNKSLNGTRHAEFLAIE 67

Query: 62  EAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           EA         R    YVT+EPC        CA  + +  IR V     +     +G  L
Sbjct: 68  EALRSHPRSIFRETDLYVTVEPCIM------CASALRQYRIRSVYFGCANERFGGTGGVL 121

Query: 117 QWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSH 151
              S   I     +   +   E  + L  +  ++ E   +
Sbjct: 122 TLHSDSAIDPPYPVYGGIFRKEAIMLLRQFYVQENENAPN 161


>gi|167590679|ref|ZP_02383067.1| riboflavin biosynthesis protein RibD [Burkholderia ubonensis Bu]
          Length = 119

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 8/107 (7%)

Query: 254 PVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
              A A + +   I+         DL  +LT L  RG+  L VE G  +  S +    VD
Sbjct: 2   EARAAALKARGAEIVPLPNAHGKVDLPGMLTALGARGINELHVEAGHKLNGSLLREHCVD 61

Query: 310 SIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCL 352
            +++Y +  ++G         +                +  G D+ +
Sbjct: 62  ELLVYLAPSLLGADAAGMFDLAAPASLDARARLSFHSIERIGDDLRI 108


>gi|92114624|ref|YP_574552.1| cytosine deaminase [Chromohalobacter salexigens DSM 3043]
 gi|91797714|gb|ABE59853.1| Cytosine deaminase [Chromohalobacter salexigens DSM 3043]
          Length = 149

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 20/148 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGE 65
           FM AA+  +R   G  +    +  ++V  G +IGRG            H E+ ALE AG 
Sbjct: 4   FMQAAIEEARK--GYEAGGVPIGSVLVHRGEIIGRGHNQRQQRGSAILHGEMDALENAGR 61

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                 R A  Y TL PC      P C+  I+  GI  VV+  +             L +
Sbjct: 62  LPAHVYREAVLYTTLSPC------PMCSGAIVLYGIPEVVIGENTTFKGDE----ALLRE 111

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           +G+ +    +S+ K  +  ++  + E  
Sbjct: 112 RGVTLTIHDDSQCKSLMAQFIAERPEVW 139


>gi|71736711|ref|YP_273597.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|289625949|ref|ZP_06458903.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289647891|ref|ZP_06479234.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|71557264|gb|AAZ36475.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|320323193|gb|EFW79282.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320329536|gb|EFW85525.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330867510|gb|EGH02219.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. aesculi str. 0893_23]
 gi|330874802|gb|EGH08951.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 169

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 20/129 (15%)

Query: 30  SVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            V  ++V++G +IGRG      A     HAE+ A+ +A          G+T YVTLEPCS
Sbjct: 33  PVGAVVVQNGEIIGRGYNCPISASDPSAHAEMVAIRDAARALDNYRLPGSTLYVTLEPCS 92

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  CA  I+   + RVV    +P   +     Q     +L+ + +    ++  E  
Sbjct: 93  M------CAGLIVHSRVARVVYGALEPKAGIVQSQGQFFSQGFLNHRVLFEGGVLSEECG 146

Query: 136 IFLHAYLTR 144
             L  +   
Sbjct: 147 AMLSEFFRM 155


>gi|114565589|ref|YP_752743.1| hypothetical protein Swol_0013 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114336524|gb|ABI67372.1| tRNA-adenosine deaminase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 151

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL  +R         P V  ++V +G +I R             HAE+ AL+ A
Sbjct: 4   EDFMRHALEEAREA-YKRGEIP-VGAIVVHNGKIIARAHNEKESYQDATAHAEMLALQRA 61

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                      +  Y TLEPC        CA  ++   +  +V  V DP    +G     
Sbjct: 62  ARHLGHWRLNESVLYCTLEPC------VMCAGAMVNVRLGHLVYGVTDPKAGSAGSIYDI 115

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ + ++   +++ E    L  + 
Sbjct: 116 VRSPALNHQVVVEGGVLKEECSELLKRFF 144


>gi|313887628|ref|ZP_07821310.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846237|gb|EFR33616.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 150

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 17/108 (15%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
           +FM  ALR+ R  +   S +  + C++VK+  +IG G            HAE+ A+  A 
Sbjct: 4   KFMKEALRYGRRSLL--SDDVPIGCVVVKNNKIIGYGYNKKEDLKNPTAHAEIMAISMAA 61

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
                    G   YVTLEPC        C   I+   I+ +     + 
Sbjct: 62  RHLNSYHLEGCDIYVTLEPCLM------CVGAILNARIKNLYFGARNK 103


>gi|254882842|ref|ZP_05255552.1| cytosine deaminase [Bacteroides sp. 4_3_47FAA]
 gi|319643397|ref|ZP_07998023.1| cytosine/adenosine deaminase [Bacteroides sp. 3_1_40A]
 gi|254835635|gb|EET15944.1| cytosine deaminase [Bacteroides sp. 4_3_47FAA]
 gi|317385026|gb|EFV65979.1| cytosine/adenosine deaminase [Bacteroides sp. 3_1_40A]
          Length = 144

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 54/149 (36%), Gaps = 17/149 (11%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
           + D  +M  AL  +            V  ++V    +IGRG     T      HAE+QA+
Sbjct: 2   ADDTYYMKQALMEAVKAA--EQGEVPVGAVVVCRDRIIGRGHNLTETLNDVTAHAEMQAI 59

Query: 61  EEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A     G      T YVT+EPC        CA  I      ++V   +DP        
Sbjct: 60  TAAANTLGGKYLNECTLYVTVEPC------VMCAGAIAWAQTGKLVFGAEDPKRGYQKYA 113

Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
              L  K I+V  ++  E    +  +  +
Sbjct: 114 PDALHPKTIVVKGILADECVRLMKDFFKK 142


>gi|158334126|ref|YP_001515298.1| cytosine/adenosine deaminase [Acaryochloris marina MBIC11017]
 gi|158304367|gb|ABW25984.1| Cytosine/adenosine deaminase [Acaryochloris marina MBIC11017]
          Length = 150

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 20/140 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAGE 65
           FM AA++ ++   GL +    +  ++VK+G ++GRG       G    HAE+ ALE  G 
Sbjct: 6   FMDAAIQEAQR--GLAAGGIPIGSVVVKNGTIVGRGHNLRVQQGSAILHAEMSALETLGR 63

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +     +  T Y TL PCS       C   I+   I RVV+  +   +         L  
Sbjct: 64  QPAMFYQDVTLYTTLSPCSM------CTGAILLYKIPRVVIGENHTFMGEE----ALLKS 113

Query: 122 KGIIVDRMMESEGKIFLHAY 141
           +G+ V  +   + +  + A+
Sbjct: 114 RGVKVTVLDLPQCRQMMQAF 133


>gi|308803957|ref|XP_003079291.1| Cytosine deaminase FCY1 and related enzymes (ISS) [Ostreococcus
           tauri]
 gi|116057746|emb|CAL53949.1| Cytosine deaminase FCY1 and related enzymes (ISS) [Ostreococcus
           tauri]
          Length = 205

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 53/140 (37%), Gaps = 21/140 (15%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE-- 56
            +  D   M  ALR +R  +      P   C +V+DG ++ RG  A      G  HAE  
Sbjct: 23  FTDADRAHMREALREARRAL-DAWEVPC-GCALVRDGEIVARGRNATNRTRNGTRHAEFE 80

Query: 57  -VQALEEAGEEARGA------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
            V AL  A +    A      T YVT EPC        CA  +   G+RRVV    +   
Sbjct: 81  AVDALLRAHDGDVDACGFEEMTLYVTCEPC------VMCAGAMSALGVRRVVYGCANDKF 134

Query: 110 RVSGRGLQWLSQKGIIVDRM 129
             +G  L          D +
Sbjct: 135 GGNGTVLDVHDSGCGRCDGV 154


>gi|319790641|ref|YP_004152274.1| CMP/dCMP deaminase zinc-binding protein [Thermovibrio ammonificans
           HB-1]
 gi|317115143|gb|ADU97633.1| CMP/dCMP deaminase zinc-binding protein [Thermovibrio ammonificans
           HB-1]
          Length = 148

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 17/122 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           D  F+  ALR +     L+     +  ++V++G VI +             HAE+ A+ E
Sbjct: 3   DLYFLRLALREAEKA--LSFGEVPIGAVVVRNGEVIAKAFNRKEFLQDPTAHAELIAIRE 60

Query: 63  AGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A  +         T Y T+EPC        C   II+  I+RVV    DP         +
Sbjct: 61  AARKLNSWRLNDCTIYSTVEPCIM------CCGAIIQSRIKRVVYSTPDPKFGGVESLYR 114

Query: 118 WL 119
            L
Sbjct: 115 LL 116


>gi|307328982|ref|ZP_07608150.1| bifunctional deaminase-reductase domain protein [Streptomyces
           violaceusniger Tu 4113]
 gi|306885344|gb|EFN16362.1| bifunctional deaminase-reductase domain protein [Streptomyces
           violaceusniger Tu 4113]
          Length = 284

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 71/237 (29%), Gaps = 17/237 (7%)

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMME---SEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
            D P    +G         G       E    E                + +   +  S 
Sbjct: 13  ADSPAETTAGEREAEDHAAGERAAEDREWGLDELADAYAYPEPPHGPSGAFLRANMVSSL 72

Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD--DPELTC------RLN 212
           D         S P++         +LR  +DA++VG GTV  +   P          R  
Sbjct: 73  DG-AAHHDGRSKPLSSDADMRIFGVLRGLADAVVVGAGTVRLEGYRPARAREAFAERRAA 131

Query: 213 GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC 272
             Q  +P   ++     L     +    L+  V+I             R     +++   
Sbjct: 132 LGQAPAPAIAVVSASLDLDFSMPLFTEPLVPTVVITGAAAAAERIERARAAGAEVVFAGA 191

Query: 273 -----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
                 D   ++T L   G T LL EGG  +   F  + ++D + L  + +V     
Sbjct: 192 GPSGRVDAAAVVTALAELGHTRLLTEGGPTLLAQFAAAGVLDELCLAVAPLVTAGDA 248


>gi|270291185|ref|ZP_06197408.1| cytidine deaminase [Pediococcus acidilactici 7_4]
 gi|270280581|gb|EFA26416.1| cytidine deaminase [Pediococcus acidilactici 7_4]
          Length = 163

 Score = 77.6 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 48/134 (35%), Gaps = 21/134 (15%)

Query: 1   MPVSSFDA----RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGC 52
           M +S         +M  AL+ +++   +      +  ++V DG +IGRG      +    
Sbjct: 1   MSMSKLSEAEVQFYMGEALKEAQFAKMIDEV--PIGAVVVHDGKIIGRGHNLREHSQDAT 58

Query: 53  PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
            HAEV A+ EA    R         +VT+EPC     +      II   I  V     DP
Sbjct: 59  THAEVLAITEACAYLRSWRLWDCQLFVTIEPCLMCSGT------IINSQIPEVYFGARDP 112

Query: 108 DVRVSGRGLQWLSQ 121
                      L  
Sbjct: 113 KAGAVRSLYTVLED 126


>gi|115372516|ref|ZP_01459824.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Stigmatella aurantiaca DW4/3-1]
 gi|310819038|ref|YP_003951396.1| RibD domain-containing protein [Stigmatella aurantiaca DW4/3-1]
 gi|115370478|gb|EAU69405.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Stigmatella aurantiaca DW4/3-1]
 gi|309392110|gb|ADO69569.1| RibD domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 230

 Score = 77.6 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 9/140 (6%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL--KKLL 279
           I LDP  KL+  S  I    +  V+  TE          R K ++ ++    DL  KK+L
Sbjct: 89  IALDPSGKLTWKSSSIDEEHVITVL--TEAVSDDYLAFLRSKGVSYLFGGKTDLNLKKVL 146

Query: 280 TILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL---EEGYLE 335
             L    G+  LL+EGG  +  SF+++ L+D + +  + I  G  G P+     E     
Sbjct: 147 EKLRKEFGIKKLLLEGGGKINGSFLDADLIDELSVLVAPIADGAMGTPALFDAREGKGPA 206

Query: 336 KNFMCVRRDYFGSD-VCLEY 354
           ++   V  +   SD V L Y
Sbjct: 207 RHLKLVSFEKRRSDLVWLRY 226


>gi|32477503|ref|NP_870497.1| cytosine deaminase [Rhodopirellula baltica SH 1]
 gi|32448057|emb|CAD77574.1| cytosine deaminase [Rhodopirellula baltica SH 1]
 gi|327542170|gb|EGF28663.1| CMP/dCMP deaminase zinc-binding protein [Rhodopirellula baltica
           WH47]
          Length = 159

 Score = 77.6 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 51/152 (33%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
             D  +M  A+  ++           V  +IV+ G  I               HAE+ A+
Sbjct: 7   DIDRHWMQRAIEMAQSAAL--EDEVPVGAIIVRSGTAIAAAANQREALHDPTAHAEMIAI 64

Query: 61  EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A            T YVTLEPC        CA  I++  + RVV    DP        
Sbjct: 65  TQAAASIENWRLEQTTLYVTLEPCLM------CAGAILQARVPRVVFGASDPKAGAVTSL 118

Query: 116 LQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
            +      L+ +  I   +M  +    L  + 
Sbjct: 119 YEVLTDSRLNHRCEITHGVMAEQCGHLLTEFF 150


>gi|154494050|ref|ZP_02033370.1| hypothetical protein PARMER_03395 [Parabacteroides merdae ATCC
           43184]
 gi|154086310|gb|EDN85355.1| hypothetical protein PARMER_03395 [Parabacteroides merdae ATCC
           43184]
          Length = 147

 Score = 77.6 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 51/147 (34%), Gaps = 17/147 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           D  FM  AL  +            V  +IV +  +I R             HAE+ A+  
Sbjct: 7   DEYFMKQALVEACSAA--EEGEVPVGAVIVCNNQIIARAHNQTERLNDPTAHAEMLAITA 64

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A      +   G + YVT+EPC        CA  I    + ++V    D          +
Sbjct: 65  AVGVLGAKYLTGCSLYVTVEPC------VMCAGAIGWSQLSKIVYGATDEKRGFQQYAPK 118

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTR 144
            L  K  +   ++E+E    +  +  R
Sbjct: 119 ALHPKATVKKGVLENECAEEMRKFFQR 145


>gi|330959126|gb|EGH59386.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 169

 Score = 77.6 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 59/154 (38%), Gaps = 22/154 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
           S D  FM      +    G       V  ++V+ G +IGRG            HAE+ A+
Sbjct: 10  SKDQHFMRE--ALALAAQGALLGEVPVGAVLVQHGEIIGRGYNCPISGSDPSAHAEMMAI 67

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A +        G+T YVTLEPCS       CA  I+   + RVV    +P   +    
Sbjct: 68  RDAAKALDNYRLPGSTLYVTLEPCSM------CAGLIVHSRVARVVYGALEPKAGIVESQ 121

Query: 116 LQ-----WLSQKGIIVDRMMESEGKIFLHAYLTR 144
            Q     +L+ + +    ++  E    L  +   
Sbjct: 122 GQFFSQGFLNHRVLFEGGVLGEECGAMLSEFFRM 155


>gi|290956554|ref|YP_003487736.1| hydrolase [Streptomyces scabiei 87.22]
 gi|260646080|emb|CBG69173.1| putative hydrolase [Streptomyces scabiei 87.22]
          Length = 265

 Score = 77.6 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 72/219 (32%), Gaps = 13/219 (5%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD--DPEL 207
             + + +  + D         S PI+          LR  +D ++VG  TV  +   P  
Sbjct: 47  PWLRVNMVSTLDG-AAQHDGRSQPISSDADMRIFGTLRGLADVVVVGAETVRQEGYRPAR 105

Query: 208 TCRLNG------LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
                        Q  +P   ++     L     +  ++ +  +++           A  
Sbjct: 106 AREAFAEARRAAGQTPAPAVAVVSASLDLDFSLPLFASSSVPTLLLTGAAAPSDRVAAAE 165

Query: 262 KKNINIIYCD---CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
           K  + ++        D  + +  L G G+T LL EGG  +    I S ++D + L  S +
Sbjct: 166 KAGVRVLVAGDGAGVDPARAVRALAGLGLTRLLGEGGPRLLGQLIASDVLDELCLTVSPM 225

Query: 319 VI-GEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
           +  G+    +      + K F        G  +   Y  
Sbjct: 226 LTAGDAQRIAGGPSVQVPKRFALASLLEEGGFLFGRYRR 264


>gi|294635297|ref|ZP_06713796.1| riboflavin biosynthesis protein RibD [Edwardsiella tarda ATCC
          23685]
 gi|291091331|gb|EFE23892.1| riboflavin biosynthesis protein RibD [Edwardsiella tarda ATCC
          23685]
          Length = 46

 Score = 77.6 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 25/46 (54%)

Query: 1  MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV 46
          M     D  +++ A   +R     T+ NP+V C++V+DG ++G G 
Sbjct: 1  MSAIHPDEFYLARAFELARRGRFTTTPNPNVGCVLVRDGQIVGEGF 46


>gi|295676796|ref|YP_003605320.1| CMP/dCMP deaminase zinc-binding protein [Burkholderia sp. CCGE1002]
 gi|295436639|gb|ADG15809.1| CMP/dCMP deaminase zinc-binding protein [Burkholderia sp. CCGE1002]
          Length = 249

 Score = 77.6 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 48/127 (37%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
            V  ++V+   VI  G     G      HAE+ AL  A +        G   YVTLEPC 
Sbjct: 80  PVGAVLVRGDEVIATGFNHPIGAHDPSAHAEMVALRAAAQSLENYRLPGCELYVTLEPCL 139

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  CA  I+   I RVV    DP     G  +       L+    +   ++E+E  
Sbjct: 140 M------CAGAIMHARIARVVFGARDPKTGACGSVVDAFANPRLNHHTTVSGGVLEAECG 193

Query: 136 IFLHAYL 142
             L ++ 
Sbjct: 194 AALRSFF 200


>gi|313677068|ref|YP_004055064.1| cmp/dcmp deaminase zinc-binding protein [Marivirga tractuosa DSM
           4126]
 gi|312943766|gb|ADR22956.1| CMP/dCMP deaminase zinc-binding protein [Marivirga tractuosa DSM
           4126]
          Length = 152

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 56/158 (35%), Gaps = 18/158 (11%)

Query: 1   MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
           M ++ + D  FM  ALR +   +        V  ++V    +I +             HA
Sbjct: 1   MELTVNSDEHFMREALRQAE--IAYEEGEIPVGAVVVCQKKIIAKAYNQTERLNDVTAHA 58

Query: 56  EVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+  A     G      T YV+LEPC        CA  +    I  +V  + D    
Sbjct: 59  EMLAITSAANHLGGKYLTDCTLYVSLEPCGM------CAGALNWSQISEIVYALADEKRG 112

Query: 111 VSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
            +      +  K  +   +M +E K  +  +  +   K
Sbjct: 113 FTKINPNMIHPKTKVKSGLMAAESKKLIDDFFAKMRNK 150


>gi|126697581|ref|YP_001086478.1| putative cytosine/adenosine deaminase [Clostridium difficile 630]
 gi|254973665|ref|ZP_05270137.1| putative cytosine/adenosine deaminase [Clostridium difficile
           QCD-66c26]
 gi|255091056|ref|ZP_05320534.1| putative cytosine/adenosine deaminase [Clostridium difficile CIP
           107932]
 gi|255099172|ref|ZP_05328149.1| putative cytosine/adenosine deaminase [Clostridium difficile
           QCD-63q42]
 gi|255312710|ref|ZP_05354293.1| putative cytosine/adenosine deaminase [Clostridium difficile
           QCD-76w55]
 gi|255515470|ref|ZP_05383146.1| putative cytosine/adenosine deaminase [Clostridium difficile
           QCD-97b34]
 gi|255648562|ref|ZP_05395464.1| putative cytosine/adenosine deaminase [Clostridium difficile
           QCD-37x79]
 gi|255654097|ref|ZP_05399506.1| putative cytosine/adenosine deaminase [Clostridium difficile
           QCD-23m63]
 gi|260681784|ref|YP_003213069.1| putative cytosine/adenosine deaminase [Clostridium difficile CD196]
 gi|260685381|ref|YP_003216514.1| putative cytosine/adenosine deaminase [Clostridium difficile
           R20291]
 gi|296452478|ref|ZP_06894177.1| cytidine/deoxycytidylate deaminase [Clostridium difficile NAP08]
 gi|296878246|ref|ZP_06902256.1| cytidine/deoxycytidylate deaminase [Clostridium difficile NAP07]
 gi|306518691|ref|ZP_07405038.1| putative cytosine/adenosine deaminase [Clostridium difficile
           QCD-32g58]
 gi|115249018|emb|CAJ66829.1| transfer RNA specific adenosine deaminase [Clostridium difficile]
 gi|260207947|emb|CBA60067.1| putative cytosine/adenosine deaminase [Clostridium difficile CD196]
 gi|260211397|emb|CBE01470.1| putative cytosine/adenosine deaminase [Clostridium difficile
           R20291]
 gi|296258684|gb|EFH05580.1| cytidine/deoxycytidylate deaminase [Clostridium difficile NAP08]
 gi|296430754|gb|EFH16591.1| cytidine/deoxycytidylate deaminase [Clostridium difficile NAP07]
          Length = 151

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 58/148 (39%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
            +M  AL+ +        T   +  +IVKD  +I R      T      HAE+ A+++A 
Sbjct: 5   FYMKEALKEAYKAYNKKET--PIGAIIVKDNQIIARAHNLTETLKDSTAHAEILAIKQAS 62

Query: 65  EEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           E+  G        YVT+EPC        C+  I+   I+++++           +  ++ 
Sbjct: 63  EKLGGWRLTDCDLYVTMEPCIM------CSGAIVNSRIKKLIIGTRHVKNSYIEKQHEFK 116

Query: 120 -----SQKGIIVDRMMESEGKIFLHAYL 142
                +    +   +++ E  I L  + 
Sbjct: 117 LDYFNNNNVKVAFDVLQEECSIILQEFF 144


>gi|260436582|ref|ZP_05790552.1| riboflavin biosynthesis protein RibD C- domain protein
           [Synechococcus sp. WH 8109]
 gi|260414456|gb|EEX07752.1| riboflavin biosynthesis protein RibD C- domain protein
           [Synechococcus sp. WH 8109]
          Length = 225

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 70/190 (36%), Gaps = 18/190 (9%)

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
            L R    R  + L +A+S D  +     G+  + G   +  +    A  DA L+G GT+
Sbjct: 1   MLQRPTPSRPFVRLVLAISLDGRLAPPVGGAAQLGGEGDRRALEHALAWGDACLIGAGTL 60

Query: 201 LADD-------PELT-CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252
            A         P+L   R +  +   P  +++      S   +     L   ++      
Sbjct: 61  RAHQCTCLIRSPQLLERRRSEGRAEQPAAVVVSRSPDFSSAWRFFDQPLQRWLL------ 114

Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
               A     +  +  +       + L +L   G+  L++ GGA ++   + +  VD++ 
Sbjct: 115 ----APEPVDQGFDRWFPLAPTWPERLKVLGAAGIQRLVLLGGAQLSADLLQADCVDALQ 170

Query: 313 LYRSQIVIGE 322
           L     ++G 
Sbjct: 171 LTLVPQLLGG 180


>gi|213962212|ref|ZP_03390476.1| cytidine/deoxycytidylate deaminase family protein [Capnocytophaga
           sputigena Capno]
 gi|213955218|gb|EEB66536.1| cytidine/deoxycytidylate deaminase family protein [Capnocytophaga
           sputigena Capno]
          Length = 144

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 17/149 (11%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
           + D  FM  AL  ++  +        V  +I  D  +I +             HAE+QA+
Sbjct: 2   NTDEYFMQKALEEAQ--IAFEEDEIPVGAIITIDNRIIAKAHNLTERLKDVTAHAEMQAI 59

Query: 61  EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A     G+     T Y+TLEPC+       CA  +    + R+V   DDP       G
Sbjct: 60  TMAAHYLGGKYLTDCTMYITLEPCAM------CAGALYWSQLSRLVYAADDPHRGFKAMG 113

Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            +   +  +++  + E    +    +  +
Sbjct: 114 GKLHPKTEVVMGILSEEATTLLKQFFQQK 142


>gi|256391606|ref|YP_003113170.1| CMP/dCMP deaminase zinc-binding [Catenulispora acidiphila DSM
           44928]
 gi|256357832|gb|ACU71329.1| CMP/dCMP deaminase zinc-binding [Catenulispora acidiphila DSM
           44928]
          Length = 164

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/138 (32%), Positives = 58/138 (42%), Gaps = 14/138 (10%)

Query: 7   DARFMSAALRFSRWHVGLTSTNP---SVACLIVK-DGIVIGRGVTAYGGC-PHAEVQALE 61
           D  ++S A+  +          P   +V  LIV  D   + RG +       HAE  AL 
Sbjct: 18  DREWLSTAVDLAWR----CPPAPGAFNVGALIVDADDRELARGWSRDTDEHVHAEESALN 73

Query: 62  EAGE---EARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPD-VRVSGRGL 116
             G       GAT Y +LEPCS     P  C Q II  GIRRVV    +P  +    +G 
Sbjct: 74  TLGPNHPRLSGATVYSSLEPCSIRKSRPLTCTQLIIASGIRRVVFAWREPSLLVEDCQGA 133

Query: 117 QWLSQKGIIVDRMMESEG 134
           + L + GI V    E E 
Sbjct: 134 ELLREAGIEVVEFPEFEP 151


>gi|300865868|ref|ZP_07110611.1| tRNA-adenosine deaminase [Oscillatoria sp. PCC 6506]
 gi|300336131|emb|CBN55769.1| tRNA-adenosine deaminase [Oscillatoria sp. PCC 6506]
          Length = 169

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 23/149 (15%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEA 63
           ++MS A++ ++   G     P V   IV   G +I +G            HAE+ AL  A
Sbjct: 20  QWMSRAIKLAQEA-GEAGEVP-VGAAIVDSQGKLIAQGQNRRERDCDPTAHAEILALRGA 77

Query: 64  GEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G   +       T YVTLEPC      P CA  I++  I  +V  VDDP           
Sbjct: 78  GIALQNWHLNACTLYVTLEPC------PMCAGAIVQARIGLLVYGVDDPKSGTIRTVGNI 131

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                   +  ++  +MESE +  L ++ 
Sbjct: 132 PDSDCSYHRLPVLGGIMESECREQLQSWF 160


>gi|33866732|ref|NP_898291.1| putative riboflavin-specific deaminase [Synechococcus sp. WH 8102]
 gi|33639333|emb|CAE08715.1| putative riboflavin-specific deaminase [Synechococcus sp. WH 8102]
          Length = 223

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 83/233 (35%), Gaps = 27/233 (11%)

Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
              +R  + L +A+S D  +  A  G+  + G   +  +    A +DA L+G GT+ A  
Sbjct: 1   MQGERPTVRLVLAISLDGRLAPAEGGAAQLGGDGDRIALEQALAWADACLIGAGTLRAHQ 60

Query: 205 PE--------LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
                     +  RL   +   P  ++      +S   +  +  L   ++          
Sbjct: 61  CTCLIRNQTLVDQRLAAGRPAQPAAVVASRSGNVSSSWRFFQQPLQRWLL---------- 110

Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
           A A  +      +       + L  L   G+  L++ GGA +A   +    VD + L   
Sbjct: 111 APAPMEWGFERWFPLAESWTEQLVGLGSAGIQRLVLLGGAHLAADLLAGDCVDELQLTVV 170

Query: 317 QIVIGEGGIPSPLEEGYLE------KNFMCVRRDYFGSDVCLEYIGKNLCLQE 363
             V+G G    P     L       + +  V  +  GS    E++ +   L+E
Sbjct: 171 PRVLGGGNTWLPTTSPGLPYALSQAEAWRAVGAEPLGSG---EWLLRYRRLRE 220


>gi|292493710|ref|YP_003529149.1| CMP/dCMP deaminase zinc-binding protein [Nitrosococcus halophilus
           Nc4]
 gi|291582305|gb|ADE16762.1| CMP/dCMP deaminase zinc-binding protein [Nitrosococcus halophilus
           Nc4]
          Length = 142

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 17/118 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEE 66
           M  AL  +R           V  ++V++G ++  G     TA     HAE+QA+  A ++
Sbjct: 1   MHHALVLARHAEER--GEVPVGAVLVQEGEMVAEGWNCPITAKDPTAHAEIQAIRAASQQ 58

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                  G T YVTLEPC+       CA  II+  I+RVV    DP    +G  L  L
Sbjct: 59  LGNYRLVGTTLYVTLEPCAM------CAGAIIQARIQRVVFGAFDPKGGAAGSVLSIL 110


>gi|170702297|ref|ZP_02893195.1| CMP/dCMP deaminase zinc-binding [Burkholderia ambifaria IOP40-10]
 gi|170132806|gb|EDT01236.1| CMP/dCMP deaminase zinc-binding [Burkholderia ambifaria IOP40-10]
          Length = 193

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 57/155 (36%), Gaps = 22/155 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEV 57
           PVS+ D  FM   L  +       +    V  ++V    VI RG     G      HAE+
Sbjct: 26  PVSARDLHFMR--LAQAAAEEARAAGEVPVGAVLVCGDEVIARGFNHPIGGHDPSAHAEM 83

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL  A +  +     G   YVTLEPC        CA  I+   I RVV    DP     
Sbjct: 84  AALRMAAQHLQNYRMPGCELYVTLEPCLM------CAGAIMHARIARVVYGAADPKTGAC 137

Query: 113 GRGLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
           G  +       L+    +   ++  E    L ++ 
Sbjct: 138 GSVIDAFANPQLNHHTEVTGGVLADECGAALKSFF 172


>gi|317503805|ref|ZP_07961817.1| cytosine deaminase [Prevotella salivae DSM 15606]
 gi|315665102|gb|EFV04757.1| cytosine deaminase [Prevotella salivae DSM 15606]
          Length = 148

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--TAYGG--CPHAEVQAL 60
             D +FM  AL  ++           +  +IV +  +I R    T        HAE+QA+
Sbjct: 6   DKDEQFMRKALYEAQRAA--EEGEIPIGAVIVCNDRIISRAHNLTEKLHDVTAHAEMQAI 63

Query: 61  EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A     G+     T YVT+EPC        CA  I    I R+V    D         
Sbjct: 64  TAAADLLGGKYLSDCTLYVTVEPC------VMCAGAIGWAQIGRIVYGASDEKRGYQFYA 117

Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYL 142
            + L  K ++   ++E+E +  +  + 
Sbjct: 118 PRALHPKAVVTRGVLEAECRQMMQDFF 144


>gi|126657691|ref|ZP_01728845.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Cyanothece
           sp. CCY0110]
 gi|126620908|gb|EAZ91623.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Cyanothece
           sp. CCY0110]
          Length = 163

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 60/156 (38%), Gaps = 23/156 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEE 62
             +M  AL+ +     L      V  +I+ + G ++  G  +         HAE+ A+ +
Sbjct: 14  RHWMKEALKLAEIAANLGDV--PVGAVIINRQGNILAEGYNSKEVNHDPTGHAEIIAIRQ 71

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +          T YVTLEPC        CA  II+  +  +V  VDD         L 
Sbjct: 72  ASQTLKSWHLEECTLYVTLEPCIM------CAGAIIQSRLGLLVYGVDDLKSGSIRTALN 125

Query: 118 W-----LSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
                  +    ++  ++E+E +  L  +   + ++
Sbjct: 126 LPDSVASNHHLSVLSGILEAECRQQLKKWFINKRQQ 161


>gi|158313558|ref|YP_001506066.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EAN1pec]
 gi|158108963|gb|ABW11160.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EAN1pec]
          Length = 162

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 6/130 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT-AYGGCPHAEVQALEEA- 63
           D  ++  A+   R       T  +V  L+V  DG  +  G + A     HAE  AL    
Sbjct: 20  DRHWLGRAVELGRRCPPSV-TAFAVGALVVAADGTPVAEGYSRAEEPADHAEEVALRRLP 78

Query: 64  -GEEARGATAYVTLEPCSHYGRSPP-CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            G    GAT Y +LEPCS     P  C + ++  G+RRVV    +P + V   G + L+ 
Sbjct: 79  PGGLPAGATVYSSLEPCSARASRPRTCTELLLAAGVRRVVFAWREPALFVDCDGAERLAA 138

Query: 122 KGIIVDRMME 131
            G+ V  + E
Sbjct: 139 AGVEVLELAE 148


>gi|241895205|ref|ZP_04782501.1| tRNA-adenosine deaminase [Weissella paramesenteroides ATCC 33313]
 gi|241871511|gb|EER75262.1| tRNA-adenosine deaminase [Weissella paramesenteroides ATCC 33313]
          Length = 175

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 53/150 (35%), Gaps = 26/150 (17%)

Query: 9   RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
            FM  AL  +R     G       +  ++V+DG V+ R          G  HAE QA+ E
Sbjct: 12  YFMGLALAEARKAAMIGEV----PIGAVVVQDGQVVSRAFNLREHMQDGSQHAEYQAIIE 67

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A  +        A  +VTLEPC        CA  I +  +  V    DDP         +
Sbjct: 68  ANRQLHSWRLPDAQLFVTLEPCIM------CAGLIQQTRLTDVYYGADDPKAGGVTSMYE 121

Query: 118 W-----LSQKGIIVDRMMESEGKIFLHAYL 142
                 L+ +  +   +   E    L  + 
Sbjct: 122 LLTDERLNHQVNVHAGVRADEASSLLKQFF 151


>gi|148269654|ref|YP_001244114.1| CMP/dCMP deaminase, zinc-binding [Thermotoga petrophila RKU-1]
 gi|170288329|ref|YP_001738567.1| CMP/dCMP deaminase zinc-binding [Thermotoga sp. RQ2]
 gi|281411636|ref|YP_003345715.1| CMP/dCMP deaminase zinc-binding protein [Thermotoga naphthophila
           RKU-10]
 gi|147735198|gb|ABQ46538.1| CMP/dCMP deaminase, zinc-binding [Thermotoga petrophila RKU-1]
 gi|170175832|gb|ACB08884.1| CMP/dCMP deaminase zinc-binding [Thermotoga sp. RQ2]
 gi|281372739|gb|ADA66301.1| CMP/dCMP deaminase zinc-binding protein [Thermotoga naphthophila
           RKU-10]
          Length = 169

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 52/135 (38%), Gaps = 39/135 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-------------- 50
           S+D+ FM  A   S      T  +  V  +IVKD  ++  G                   
Sbjct: 23  SWDSYFMRIARMVSERS---TCVHRKVGAVIVKDHRILATGYNQPPSKFPHCNEIGCIRD 79

Query: 51  ------GCP-------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                 G         HAE  AL +A   G    GAT YVT +PCS       CA+ I+ 
Sbjct: 80  DLEINSGEHQEICYALHAEQNALMQAAKFGIAVNGATIYVTHKPCSI------CARLIVN 133

Query: 95  CGIRRVVVCVDDPDV 109
            GI+RVV   D PD 
Sbjct: 134 AGIKRVVYEKDYPDP 148


>gi|15643170|ref|NP_228214.1| deoxycytidylate deaminase, putative [Thermotoga maritima MSB8]
 gi|4980909|gb|AAD35489.1|AE001720_3 deoxycytidylate deaminase, putative [Thermotoga maritima MSB8]
          Length = 201

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 52/135 (38%), Gaps = 39/135 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-------------- 50
           S+D+ FM  A   S      T  +  V  +IVKD  ++  G                   
Sbjct: 55  SWDSYFMRIARMVSERS---TCVHRKVGAVIVKDHRILATGYNQPPSKFPHCNEIGCIRD 111

Query: 51  ------GCP-------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                 G         HAE  AL +A   G    GAT YVT +PCS       CA+ I+ 
Sbjct: 112 DLEINSGEHQEICYALHAEQNALMQAAKFGIAVNGATIYVTHKPCSI------CARLIVN 165

Query: 95  CGIRRVVVCVDDPDV 109
            GI+RVV   D PD 
Sbjct: 166 AGIKRVVYEKDYPDP 180


>gi|331019747|gb|EGH99803.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 169

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 58/152 (38%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
           S D  FM      +    G       V  ++V +G +IGRG            HAE+ A+
Sbjct: 10  SNDQHFMRE--ALALAAQGALLGEVPVGAVVVHNGEIIGRGYNCPISGSDPSAHAEMVAI 67

Query: 61  EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A          G+T YVTLEPCS       CA  I+   + RVV    +P   +    
Sbjct: 68  RDAARALGNYRLPGSTLYVTLEPCSM------CAGLIVHSRLARVVYGALEPKAGIVQSQ 121

Query: 116 LQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
            Q     +L+ + +    ++  E    L  + 
Sbjct: 122 GQFFSQGFLNHRVLFEGGVLGEECGAMLSEFF 153


>gi|323142068|ref|ZP_08076916.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413455|gb|EFY04326.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Phascolarctobacterium sp. YIT 12067]
          Length = 166

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 57/163 (34%), Gaps = 24/163 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGV----TAYGGCPHAEVQAL 60
           D ++M  AL  +R    L      +  ++     G VI        T +    HAEV  +
Sbjct: 3   DKKYMQLALAEARKAAEL--GEIPIGAVLADMTTGEVIAAAHNMRETWHDATAHAEVIVI 60

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            EA E        G   YVT+EPC      P C+  I+   + RVV    D     +   
Sbjct: 61  REACERLGRWRLSGCALYVTVEPC------PMCSGAIVNGRVDRVVYGCHDVKAGGAESI 114

Query: 116 LQW-----LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHIT 153
                   L+    ++  + E E    +  +  R+ ++     
Sbjct: 115 FNIITNPNLNHCAEVISGICEEECAQVMRDFFRRRRQENKAKR 157


>gi|323344759|ref|ZP_08084983.1| tRNA-specific adenosine deaminase [Prevotella oralis ATCC 33269]
 gi|323094029|gb|EFZ36606.1| tRNA-specific adenosine deaminase [Prevotella oralis ATCC 33269]
          Length = 151

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 55/145 (37%), Gaps = 17/145 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D +FM  AL  +          P +  +IV    +I R      T +    HAE+QA+  
Sbjct: 11  DEQFMQKALIEA-KAAFDAGEIP-IGAVIVCKDRIIARAHNLTETLHDVTAHAEMQAITA 68

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +   G      T YVT+EPC        CA  I    +RR+V    D          +
Sbjct: 69  AADALGGKYLPECTLYVTIEPC------TMCAGAIGWAQLRRIVYGATDEKRGFHKYAPE 122

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYL 142
            L  K  I   ++E E +  +  + 
Sbjct: 123 ALHPKATITAGILEQECRELMRQFF 147


>gi|28868664|ref|NP_791283.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213972056|ref|ZP_03400150.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. tomato T1]
 gi|301385879|ref|ZP_07234297.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302063770|ref|ZP_07255311.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302132520|ref|ZP_07258510.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28851903|gb|AAO54978.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213923189|gb|EEB56790.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. tomato T1]
          Length = 169

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 58/152 (38%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
           S D  FM      +    G       V  ++V +G +IGRG            HAE+ A+
Sbjct: 10  SNDQHFMRE--ALALAAQGALLGEVPVGAVVVHNGEIIGRGYNCPISGSDPSAHAEMVAI 67

Query: 61  EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A          G+T YVTLEPCS       CA  I+   + RVV    +P   +    
Sbjct: 68  RDAARALGNYRLPGSTLYVTLEPCSM------CAGLIVHSRVARVVYGALEPKAGIVQSQ 121

Query: 116 LQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
            Q     +L+ + +    ++  E    L  + 
Sbjct: 122 GQFFSQGFLNHRVLFEGGVLGEECGAMLSEFF 153


>gi|33860665|ref|NP_892226.1| RibD/RibG domain-containing protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633607|emb|CAE18564.1| RibD/ribG C-terminal domain [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 220

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 70/199 (35%), Gaps = 12/199 (6%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
                I + IA S D  I     G   +     +  +    +  DA + G+GT+ A    
Sbjct: 1   MNTPSIAIIIASSLDGRIAFPSGGESHLGSKEDRRMLDENLSIVDATIFGLGTLKAHQST 60

Query: 207 LTCRLNGLQE------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
              + +          + P+ I+     K   D       +   +I    + +   A+  
Sbjct: 61  YLVKNHCKNGEIKISKNQPISIVASNSKKFKKDWNYFNQPIKRWLI----SSNKKDAIET 116

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
           +  +  I Y +     K L  +   G+  L + GGA + +SFI   L+D I +  +  +I
Sbjct: 117 KDFDKEIFYKNS--WSKTLLSIKKAGINRLALLGGANLINSFIKEDLIDEIKITIAPRII 174

Query: 321 GEGGIPSPLEEGYLEKNFM 339
           G      P E+     N  
Sbjct: 175 GGKFTWIPTEQTNKIFNLK 193


>gi|163846501|ref|YP_001634545.1| deaminase-reductase domain-containing protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222524286|ref|YP_002568757.1| bifunctional deaminase-reductase domain-containing protein
           [Chloroflexus sp. Y-400-fl]
 gi|163667790|gb|ABY34156.1| bifunctional deaminase-reductase domain protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222448165|gb|ACM52431.1| bifunctional deaminase-reductase domain protein [Chloroflexus sp.
           Y-400-fl]
          Length = 282

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 75/202 (37%), Gaps = 28/202 (13%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISK--NQVHLL----RAQSDAILVGIGTVL 201
            R  +     VS D  I     G       IS+     H L    RA++DAILVG  T+ 
Sbjct: 39  HRPLVWTNFVVSHDGRIAFNQPGWNG-GNAISRGSRHDHWLMELVRARADAILVGNATLR 97

Query: 202 ADD------------PELTC-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           A              PE    R    +   P  +IL    +L     +    L   + ++
Sbjct: 98  AARRHRWAPGEVFAWPEFAALRAAEGRPALPALVILSASGELPAAVAL---ELPRTLFLL 154

Query: 249 TENDDPVLALAFRKKNINIIYCDCR-DLKKLLTIL-VGRGVTSLLVEGGAAVAHSFINSR 306
           T  +    A       I +   D + DL   L  L    G+ +LL EGG     + + + 
Sbjct: 155 TTAEGAERARQRYPHLICLTGADGQLDLIAALAQLRHDYGIRTLLSEGGGRTYGTLLANH 214

Query: 307 LVDSIILYRSQIVIGEGGIPSP 328
           L+D + L  S I++G    PSP
Sbjct: 215 LIDEVFLTISPIIVGN---PSP 233


>gi|237800069|ref|ZP_04588530.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|237806398|ref|ZP_04593102.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022924|gb|EGI02981.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331027511|gb|EGI07566.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 168

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 52/127 (40%), Gaps = 17/127 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
           S D  FM      +    G       V  ++V +G +IGRG            HAE+ A+
Sbjct: 10  SNDQYFMRE--ALALAAQGALLGEVPVGAVVVHNGEIIGRGYNCPISGSDPSAHAEMVAI 67

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            E+ +        G+T YVTLEPCS       CA  I+   + RVV    +P   +    
Sbjct: 68  RESAKALDNYRLPGSTLYVTLEPCSM------CAGLIVHSRVARVVYGALEPKAGIVQSQ 121

Query: 116 LQWLSQK 122
            Q+ SQ 
Sbjct: 122 GQFFSQA 128


>gi|254458782|ref|ZP_05072206.1| cytosine deaminase [Campylobacterales bacterium GD 1]
 gi|207084548|gb|EDZ61836.1| cytosine deaminase [Campylobacterales bacterium GD 1]
          Length = 145

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 20/148 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGE 65
           F+  A++ ++   GL+     +  ++V DG ++GRG            HAE+  LE AG 
Sbjct: 4   FLEEAIKEAKK--GLSEGGIPIGSVLVIDGKIVGRGHNRRVQNSSAILHAEMDCLENAGR 61

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
               + + AT Y TL PC        C+  I+  GI+RV++  +           +++  
Sbjct: 62  LKAIDYKRATIYSTLSPCDM------CSGAILLYGIKRVIIGENKTFKGPE----EYVKS 111

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           +GI V  +   E    + +++    E  
Sbjct: 112 RGIEVKVVDNKECCNLMESFIKASPELW 139


>gi|311898892|dbj|BAJ31300.1| hypothetical protein KSE_55250 [Kitasatospora setae KM-6054]
          Length = 262

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 71/202 (35%), Gaps = 11/202 (5%)

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
               E    +   +  S D         S  ++    K    +LRA  D +LVG  TV A
Sbjct: 22  YAYPEAGRWLRANMVTSLDG-AARLDGLSEGLSSAADKRIFGVLRALCDVVLVGAETVRA 80

Query: 203 D-------DPELT-CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
           +        PE    R    Q  +P+  ++    +L L + +    L+  V++ T +  P
Sbjct: 81  EGYRPGRARPEFAERRAAAGQPPAPVIAVVSRSLELDLSAPLFTEPLVPTVVVTTVDAPP 140

Query: 255 VL-ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
              A       +        DL + +  L GRG    L EGG  +        L+D + L
Sbjct: 141 ARLAEVAAAAEVVTAGTGSVDLPRAVAALAGRGWRRQLTEGGPRLLAQLAADGLLDELCL 200

Query: 314 YRSQIVIGEGGIPSPLEEGYLE 335
             +  ++  G  P  +    + 
Sbjct: 201 SVAP-LVTAGDSPRIVNGPGIP 221


>gi|116071453|ref|ZP_01468721.1| putative riboflavin-specific deaminase [Synechococcus sp. BL107]
 gi|116065076|gb|EAU70834.1| putative riboflavin-specific deaminase [Synechococcus sp. BL107]
          Length = 232

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 84/227 (37%), Gaps = 25/227 (11%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA----- 202
           +R    L +A+S D  +  A  G+  + G   +  +    A +DA L+G GT+ A     
Sbjct: 15  ERPETRLVLAISLDGRLAPAEGGAAQLGGQGDRRVLDASLAWADASLMGAGTLRAHESTC 74

Query: 203 ---DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
              D   L  R++  +   P  +++          +  +  L   ++          A  
Sbjct: 75  LIRDRALLQQRVDQGRSVQPAVVVVSRSHDFPQQWRFFRQPLERWLL----------APK 124

Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
              +  +            L  L   GV  L++ GGA++A   + +  VD++ L     +
Sbjct: 125 APAQGFDRWIPLGSSWPDRLGALRSLGVRRLVLLGGASLAAELLQADCVDALQLTLVPTL 184

Query: 320 IGEGGIPSPLEEGYLEKNFMCV------RRDYFGS-DVCLEYIGKNL 359
           +G      P+E+G L    M +        +  G  ++ L Y  + L
Sbjct: 185 LGGDHTWLPVEQGLLPVQMMELGAWGCDGVEDLGDGEMMLRYRRQRL 231


>gi|307243435|ref|ZP_07525591.1| putative thiamine-phosphate pyrophosphorylase [Peptostreptococcus
           stomatis DSM 17678]
 gi|306493159|gb|EFM65156.1| putative thiamine-phosphate pyrophosphorylase [Peptostreptococcus
           stomatis DSM 17678]
          Length = 391

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 17/116 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
           A FMS AL+ +R    +  T   +  ++V DG ++GRG            HAE+ A++EA
Sbjct: 242 AYFMSEALKEARKAYAMKET--PIGAVVVYDGQIVGRGFNQVELTGDPTQHAEMVAIQEA 299

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
            +            YVT+EPC        CA  I    I+ + +        + G+
Sbjct: 300 AKALGRWRLYDCQMYVTMEPCLM------CAGAIENSRIKSLYIGASHKKNHLVGK 349


>gi|210631978|ref|ZP_03297143.1| hypothetical protein COLSTE_01034 [Collinsella stercoris DSM 13279]
 gi|210159780|gb|EEA90751.1| hypothetical protein COLSTE_01034 [Collinsella stercoris DSM 13279]
          Length = 647

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 57/153 (37%), Gaps = 22/153 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQAL 60
           + D RFMS AL  +R     +     +  ++V +G VI R             HAE  A+
Sbjct: 6   AVDERFMSMALEEARAAA--SIGEVPIGAVVVHEGRVIARAHNRREADEDPSAHAEFAAM 63

Query: 61  EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG-- 113
            EA          G T YVTLEPC        CA  ++   I R V    DP     G  
Sbjct: 64  MEASRALGRWRLTGCTVYVTLEPCLM------CAGLMVNARIDRCVFGAYDPKGGAVGTL 117

Query: 114 ---RGLQWLSQKGIIVDRMMESEGKIFLHAYLT 143
                 + L+    +   ++E E    L A+  
Sbjct: 118 YDVSCDERLNHAFDVTPGVLEDECAAVLRAFFQ 150


>gi|28868808|ref|NP_791427.1| cytosine deaminase [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28852047|gb|AAO55122.1| cytosine deaminase [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 145

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 20/140 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGE 65
           FM AA+  ++  +GL      +  +IV  G +IGRG            H E+ ALE AG 
Sbjct: 4   FMQAAIDEAQ--LGLDEGGIPIGSVIVHAGKIIGRGHNRRVQEGSATRHGEMDALENAGR 61

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +     R A  Y TL PC+       C+  I+  GIR+V+V  +   +       + L  
Sbjct: 62  QPASVYREAVLYTTLSPCAM------CSGAILLYGIRKVIVGENHSFMGEE----ELLRS 111

Query: 122 KGIIVDRMMESEGKIFLHAY 141
           +G+ ++ +     K  +  +
Sbjct: 112 RGVQIEVLDNERCKHMMQGF 131


>gi|325092201|gb|EGC45511.1| tRNA specific adenosine deaminase [Ajellomyces capsulatus H88]
          Length = 197

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 57/158 (36%), Gaps = 22/158 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL      +    T   V C++V +  VIG G+        G  HAE  A+EE 
Sbjct: 18  EYFMKKALDMGEEALASGET--PVGCVLVHNDEVIGSGMNDTNKSMNGTRHAEFLAIEEV 75

Query: 64  GEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                    R    YVT+EPC        CA  + +  IR V     +     +G  L  
Sbjct: 76  LRNYPRSIFRETDLYVTVEPCIM------CASALRQYQIRHVYFGCANERFGGTGGVLNL 129

Query: 119 LSQKGII-----VDRMMESEGKIFLHAYLTRQVEKRSH 151
            S  GI         +   E  + L  +  ++ E+  +
Sbjct: 130 HSDPGIDPPYGLTGGLFRREAIMLLRRFYIQENERAPN 167


>gi|150009165|ref|YP_001303908.1| putative cytosine/adenosine deaminase [Parabacteroides distasonis
           ATCC 8503]
 gi|255015772|ref|ZP_05287898.1| putative cytosine/adenosine deaminase [Bacteroides sp. 2_1_7]
 gi|256841721|ref|ZP_05547227.1| cytosine/adenosine deaminase [Parabacteroides sp. D13]
 gi|298377094|ref|ZP_06987048.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
           3_1_19]
 gi|149937589|gb|ABR44286.1| putative cytosine/adenosine deaminase [Parabacteroides distasonis
           ATCC 8503]
 gi|256736615|gb|EEU49943.1| cytosine/adenosine deaminase [Parabacteroides sp. D13]
 gi|298266078|gb|EFI07737.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
           3_1_19]
          Length = 146

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 50/145 (34%), Gaps = 17/145 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           D  FM  AL  +R     +     V  +IV +  +I R             HAE+ A+  
Sbjct: 6   DEYFMKQALVEARAAA--SEGEVPVGAVIVCNNQIIARAHNQTECLNDVTAHAEMLAITA 63

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A      +     + YVT+EPC        CA  I    +  +V    D     S    Q
Sbjct: 64  AAGVLGAKYLTNCSLYVTVEPCIM------CAGAIGWAQLSTIVYGASDDKRGFSKFAPQ 117

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYL 142
               K II   ++E E    +  + 
Sbjct: 118 AFHPKAIIKKGILEKECAEEMQRFF 142


>gi|229845957|ref|ZP_04466069.1| hypothetical protein CGSHi7P49H1_03883 [Haemophilus influenzae
           7P49H1]
 gi|229810961|gb|EEP46678.1| hypothetical protein CGSHi7P49H1_03883 [Haemophilus influenzae
           7P49H1]
          Length = 159

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 58/167 (34%), Gaps = 23/167 (13%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVT----AYGGCPHAEVQALEEAGE 65
           M  AL  +     L      V  ++V D   +IG G            HAE+ AL    +
Sbjct: 1   MRYALELADKAEAL--GEIPVGAVLVDDARNIIGEGWNLSIVQSDPTAHAEIIALRNGAK 58

Query: 66  EARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ--- 117
             +      +T YVTLEPC        CA  I+   I+R+V    D      G       
Sbjct: 59  NIQNYRLLNSTLYVTLEPC------TMCAGAILHSRIKRLVFGASDYKTGAIGSRFHFFD 112

Query: 118 --WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
              ++    I   ++  E    L  +  ++ E++      +    DN
Sbjct: 113 DYKMNHTLEITSGVLAEECSQKLSTFFQKRREEKKIEKALLKSLSDN 159


>gi|297566040|ref|YP_003685012.1| tRNA(Ile)-lysidine synthetase [Meiothermus silvanus DSM 9946]
 gi|296850489|gb|ADH63504.1| tRNA(Ile)-lysidine synthetase [Meiothermus silvanus DSM 9946]
          Length = 524

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 17/115 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
           S D RFM  AL  +    G       +  ++V+   VI +             HAE+ A+
Sbjct: 378 SLDERFMRLALAEAHSAGGR--GEVPIGAVLVRGEKVIAKAGNQVEEFQDATAHAELLAI 435

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
             A E        G+T YVTLEPC      P C   ++E  + R+V  +++    
Sbjct: 436 RAALEALGEKVLPGSTLYVTLEPC------PMCYGAMLEAQVSRLVYGMENLKAG 484


>gi|302879427|ref|YP_003847991.1| CMP/dCMP deaminase zinc-binding [Gallionella capsiferriformans
           ES-2]
 gi|302582216|gb|ADL56227.1| CMP/dCMP deaminase zinc-binding [Gallionella capsiferriformans
           ES-2]
          Length = 240

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/127 (29%), Positives = 52/127 (40%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  ++VKDG +IGRG  A    +    HAE+QAL  A +        G   +VTLEPC 
Sbjct: 99  PVGAVVVKDGQIIGRGYNAPISLHDPSAHAEMQALRAAAQYLGNYRLVGCELFVTLEPC- 157

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-----QWLSQKGIIVDRMMESEGK 135
                  CA  I+   IRR+V    D    V G  L     Q L+    +   ++     
Sbjct: 158 -----VMCAGAIMHARIRRLVYGASDFKTGVCGSLLDLFAEQRLNHHTEVAGGVLAEACG 212

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 213 ATLSRFF 219


>gi|114705782|ref|ZP_01438685.1| CMP/dCMP deaminase, zinc-binding protein [Fulvimarina pelagi
           HTCC2506]
 gi|114538628|gb|EAU41749.1| CMP/dCMP deaminase, zinc-binding protein [Fulvimarina pelagi
           HTCC2506]
          Length = 148

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 48/123 (39%), Gaps = 17/123 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
            RFM  AL  +R     T     V  +IV+DG +I +             HAE+ A+  A
Sbjct: 3   RRFMDEALEEARRAA--TRGEVPVGAVIVRDGEIIAKAGNETRAAKDPTAHAELLAIRRA 60

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                 E       YVTLEPC+       CA  I    IRR+     DP       G ++
Sbjct: 61  CLALEAERLTDCDLYVTLEPCAM------CAGAISFARIRRLYFGAADPKGGAVENGARF 114

Query: 119 LSQ 121
            SQ
Sbjct: 115 FSQ 117


>gi|330967403|gb|EGH67663.1| cytosine deaminase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 145

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 20/140 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGE 65
           FM AA+  ++  +GL      +  +IV  G +IGRG            H E+ ALE AG 
Sbjct: 4   FMQAAIDEAQ--LGLDEGGIPIGSVIVHAGKIIGRGHNRRVQEGSATRHGEMDALENAGR 61

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +     R A  Y TL PC+       C+  I+  GIR+V+V  +   +       + L  
Sbjct: 62  QPASVYREAVLYTTLSPCAM------CSGAILLYGIRKVIVGENQSFMGEE----ELLRS 111

Query: 122 KGIIVDRMMESEGKIFLHAY 141
           +G+ ++ +     K  +  +
Sbjct: 112 RGVQIEVLDNERCKHMMQGF 131


>gi|302872965|ref|YP_003841598.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulovorans 743B]
 gi|307686520|ref|ZP_07628966.1| CMP/dCMP deaminase zinc-binding protein [Clostridium cellulovorans
           743B]
 gi|302575822|gb|ADL49834.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulovorans 743B]
          Length = 147

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 56/146 (38%), Gaps = 21/146 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
           F+  A+  ++    L      V  +I+KD  VI        T      HAE+ A++ A E
Sbjct: 5   FLKIAIEEAKKAREL--GEVPVGAVIIKDDKVIAAAHNLKETKKEVTAHAELLAIKMASE 62

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                       YVTLEPC+       CA  I++  I+++ +   +P     G  +  + 
Sbjct: 63  ILDNWRLNDCEIYVTLEPCAM------CASAIVQSRIKKIYIGTFEPTTGACGSVINLVQ 116

Query: 121 QKG----IIVDRMMESEGKIFLHAYL 142
            +     + V+ +   E    +  + 
Sbjct: 117 NEALNSFVHVEWLYSDECSDIITEFF 142


>gi|113953595|ref|YP_731744.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Synechococcus sp. CC9311]
 gi|113880946|gb|ABI45904.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Synechococcus sp. CC9311]
          Length = 218

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 79/227 (34%), Gaps = 28/227 (12%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD--- 203
            +R  + L +AVS D  +  +  G+  + G   +  +    A SDA+L+G GT+ A    
Sbjct: 1   MQRPLVRLVLAVSLDGRLAPSSGGAAQLGGAGDRRVLEQALAWSDAVLIGAGTLRAHRCT 60

Query: 204 ----DPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
               DP+L   R    +   P   ++  H     +      AL   ++            
Sbjct: 61  CLIHDPQLLAQRKQDGRLLQPAAFVVSRHPDFCQEWPFFHQALERHLLTPDRMSAEGFFS 120

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTS-LLVEGGAAVAHSFINSRLVDSIILYRSQ 317
             R +               L  L   G    +L+ GGA +  S + +  VD + L  S 
Sbjct: 121 THRLQ---------PSWGSTLVELAALGFQRFVLL-GGAGLCGSLLEADQVDELQLTMSP 170

Query: 318 IVIGE-------GGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLEYIG 356
            ++G         G   P      +  +  V  D   G+++ + Y  
Sbjct: 171 CLLGGRFSWIPSDGFRMPTALSQPDA-WTLVSADRLSGNELVVRYRR 216


>gi|116511524|ref|YP_808740.1| hypothetical protein LACR_0760 [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107178|gb|ABJ72318.1| tRNA-adenosine deaminase [Lactococcus lactis subsp. cremoris SK11]
          Length = 155

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 57/157 (36%), Gaps = 23/157 (14%)

Query: 1   MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
           M  +  +   FM+ AL+ ++      +    +  +IVKDG +I R             HA
Sbjct: 1   MNFTEEEKEFFMTEALKEAQKAA--ENEEVPIGVVIVKDGEIIARDFNRRELDGRATHHA 58

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           EV A+E A +            +VT+EPC        CA  I    I +V     +P   
Sbjct: 59  EVCAIEAANQAVGNWRLLDCALFVTIEPC------VMCAGAIGLARIPQVYFGATNPKFG 112

Query: 111 VSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
            +    Q L       +  +   ++E E    +  + 
Sbjct: 113 GTVSLYQILEDKRLNHRVQVESGILEYECAKIMQDFF 149


>gi|330955311|gb|EGH55571.1| cytosine deaminase [Pseudomonas syringae Cit 7]
          Length = 145

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 20/148 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGE 65
           FM AA   ++  +GL      +  +IV  G +IGRG            H E+ ALE AG 
Sbjct: 4   FMQAAFDEAQ--LGLKEGGIPIGSVIVHGGKIIGRGHNRRVQEGSATKHGEMDALENAGR 61

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +     R +  Y TL PC+       C+  I+  GIR+V++  ++  +         L  
Sbjct: 62  QPASVYRNSVLYTTLSPCAM------CSGAILLYGIRKVIIGENESFMGEE----DLLRS 111

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           +G+ +D +   + K  +  ++  + E  
Sbjct: 112 RGVQIDVLDNHDCKHMMQGFIASKPELW 139


>gi|228994217|ref|ZP_04154115.1| Cytosine deaminase [Bacillus pseudomycoides DSM 12442]
 gi|228765510|gb|EEM14166.1| Cytosine deaminase [Bacillus pseudomycoides DSM 12442]
          Length = 169

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 22/119 (18%)

Query: 3   VSSFDARFMSAALRFSRWHVG-LTSTNPSVACLIV-KDGIVIGRG----VTAYGGCPHAE 56
           +   D  F+  AL  ++  +   T     V  +IV ++  ++G+G     T      HAE
Sbjct: 1   MREMDRLFLEMALEEAKKAMKENTYP---VGAIIVGRNNEILGKGRNRVHTQDDASAHAE 57

Query: 57  VQALEEAGEEARGA-------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           + A+  AG++   A       T Y TLEPC      P C   I+     RVV  ++D  
Sbjct: 58  IDAIRTAGKKLILAKENRLPITLYTTLEPC------PMCTGAILFSHFTRVVWILNDDK 110


>gi|308235514|ref|ZP_07666251.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Gardnerella vaginalis ATCC 14018]
 gi|311114084|ref|YP_003985305.1| putative cytosine deaminase [Gardnerella vaginalis ATCC 14019]
 gi|310945578|gb|ADP38282.1| possible cytosine deaminase [Gardnerella vaginalis ATCC 14019]
          Length = 154

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 59/150 (39%), Gaps = 23/150 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           M  ALR ++  V        V  ++V   G++IGRG            HAEV A+++A E
Sbjct: 12  MQEALRLAQ--VASDCGEVPVGAVVVDGSGVIIGRGSNLRERDSDPLSHAEVLAIKQAAE 69

Query: 66  EAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             +       T  VTLEPC      P CA  I++  I+RVV    D  +   G     L 
Sbjct: 70  SKKSWNLSDCTLVVTLEPC------PMCAGAILQTHIKRVVFGAWDSKLGACGSVWDILR 123

Query: 121 QKGI-----IVDRMMESEGKIFLHAYLTRQ 145
              +     +   + ESE    L  +    
Sbjct: 124 DPHVGSHPQVFGSVCESECVQILSDFFKNC 153


>gi|326693434|ref|ZP_08230439.1| hypothetical protein LargK3_06881 [Leuconostoc argentinum KCTC
           3773]
          Length = 169

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 52/148 (35%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGG---CPHAEVQALEEAG 64
            FM  AL  ++     T     +  +IVKD  ++ R             HAE+ A+E A 
Sbjct: 14  YFMQVALNEAKLAA--TEGEVPIGAVIVKDNQIVARAHNHREAHQLATAHAELLAIEAAN 71

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           +            +VTLEPC        CA  II   +  V    DD     +    Q L
Sbjct: 72  DALQSWRLENTALFVTLEPCIM------CAGAIINARVPVVYYGADDAKGGATRSLYQLL 125

Query: 120 S-----QKGIIVDRMMESEGKIFLHAYL 142
                  + ++  ++   EG   L  + 
Sbjct: 126 EDERLNHRVVVHPQVRGDEGGALLQDFF 153


>gi|296270519|ref|YP_003653151.1| cytosine deaminase [Thermobispora bispora DSM 43833]
 gi|296093306|gb|ADG89258.1| Cytosine deaminase [Thermobispora bispora DSM 43833]
          Length = 149

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 57/151 (37%), Gaps = 20/151 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEE 62
           D R+M  A+  +R  +GL+     +   +V DG V+G G            H E   LE 
Sbjct: 3   DDRYMRLAIEQAR--IGLSEGGIPIGAALVADGEVLGVGRNRRVQEGSAIRHGETDCLEN 60

Query: 63  AGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           AG       R +T Y TL PC        CA  ++  GI RVV+  +       G     
Sbjct: 61  AGRLPARVYRKSTLYTTLSPCH------LCAGAVLLYGIPRVVIGENRTFTASEG----L 110

Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           L Q G+ +  +   E    +  ++       
Sbjct: 111 LRQHGVELVVLDLDECVQMMREFIAANPALW 141


>gi|326800631|ref|YP_004318450.1| Guanine deaminase [Sphingobacterium sp. 21]
 gi|326551395|gb|ADZ79780.1| Guanine deaminase [Sphingobacterium sp. 21]
          Length = 160

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 59/172 (34%), Gaps = 21/172 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
           M  S  D  F+  A+  +   V      P   C+IVKDG +IG+G  +         HAE
Sbjct: 1   MMASKDDIIFLKKAIDLAVTGVKQNKGGP-FGCIIVKDGKIIGKGCNSVTSTIDPTAHAE 59

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ +A +     +    T Y + EPC      P C   I      RVV          
Sbjct: 60  IVAIRDACKHLGEYQLDDCTLYASCEPC------PMCLGAIYWARPSRVVYAATRFVAAQ 113

Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163
           +G          I  +  +    +     +      +   ++ +   ++D  
Sbjct: 114 AG-----FDDAFIYEEINLTGTERRIPFEFRQINESQAPFLSWEQKETKDLY 160


>gi|124360458|gb|ABN08468.1| CMP/dCMP deaminase, zinc-binding [Medicago truncatula]
          Length = 178

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 64/183 (34%), Gaps = 34/183 (18%)

Query: 3   VSSFDAR-FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEV 57
           ++S +   FM  A++ ++  +G  +    V C+IV+DG VI  G            HAE+
Sbjct: 1   MTSQETHIFMELAIQQAKLAMG--ALEVPVGCVIVEDGKVIASGRNRTTETRNATRHAEM 58

Query: 58  QALE--------------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           +A++              E  ++    + YVT EPC        CA  +   GI+ V   
Sbjct: 59  EAIDVLLEQWQKNGLSMTEVAKKFSNCSLYVTCEPCIM------CASALSNLGIKEVFYG 112

Query: 104 VDDPDVRVSGRGL-QWLSQK-----GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKI 156
             +      G  L   LS       G       M  E  + L  +  +           +
Sbjct: 113 CSNDKFGGCGSILSLHLSDAVSPNKGFKCAGGIMAEEAVLLLRTFYEQGNPNAPKPHRPL 172

Query: 157 AVS 159
           A  
Sbjct: 173 AHQ 175


>gi|261416951|ref|YP_003250634.1| CMP/dCMP deaminase zinc-binding protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373407|gb|ACX76152.1| CMP/dCMP deaminase zinc-binding protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302327524|gb|ADL26725.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 164

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 43/121 (35%), Gaps = 25/121 (20%)

Query: 2   PVSSFDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCP 53
            ++  D RFM  A++ S        G          +IVKDG V+  G            
Sbjct: 7   NITDEDKRFMQMAIQLSVDNVDNGGG------PFGAVIVKDGEVVATGANRVVPNNDPTA 60

Query: 54  HAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAEV A+  A  +       G T Y + EPC      P C   +    ++R+       D
Sbjct: 61  HAEVTAIRNACAKLGTFMLDGCTVYTSCEPC------PMCLSALYWARVKRICYANTKVD 114

Query: 109 V 109
            
Sbjct: 115 A 115


>gi|255037951|ref|YP_003088572.1| CMP/dCMP deaminase zinc-binding [Dyadobacter fermentans DSM 18053]
 gi|254950707|gb|ACT95407.1| CMP/dCMP deaminase zinc-binding [Dyadobacter fermentans DSM 18053]
          Length = 150

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 55/145 (37%), Gaps = 17/145 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           D  FM  AL  +          P V  L+V    +IGRG            HAE+ A+  
Sbjct: 9   DHFFMEEALALAHKA-YEEGEIP-VGALVVAKDRIIGRGYNQTERLNDVTAHAEMIAITA 66

Query: 63  AGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +          T YVTLEPC        CA  +    ++RVVV   D     S  G  
Sbjct: 67  AADHLGSKYLTDCTLYVTLEPC------VMCAGALYWTQVKRVVVGAMDEKRGFSRVGQP 120

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYL 142
            L  K  +V  +M +E +  L  + 
Sbjct: 121 LLHPKTKLVTGIMATESQELLLKFF 145


>gi|254389244|ref|ZP_05004473.1| riboflavin/cytosine deaminase [Streptomyces clavuligerus ATCC
           27064]
 gi|326444934|ref|ZP_08219668.1| putative deaminase [Streptomyces clavuligerus ATCC 27064]
 gi|197702960|gb|EDY48772.1| riboflavin/cytosine deaminase [Streptomyces clavuligerus ATCC
           27064]
          Length = 154

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 56/137 (40%), Gaps = 8/137 (5%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG-GCPHAEVQA 59
           P    D R+M  A+  +           SV  +IV + G  +  G +       HAE  A
Sbjct: 4   PGRDQDLRWMQHAIGLAALCPPAAGAY-SVGAVIVGEGGAELATGYSREADPRGHAEEAA 62

Query: 60  LEEAGE---EARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVR-VSGR 114
           L +          AT Y TLEPCS       PCA  I+  GI RVV+   +P+       
Sbjct: 63  LAKLPGGDLRLATATIYSTLEPCSQRSADRTPCAGLILRAGIPRVVIAWREPNHFVTDCV 122

Query: 115 GLQWLSQKGIIVDRMME 131
           G++ L   G+ V  M E
Sbjct: 123 GVEQLQAAGVTVVEMPE 139


>gi|116333248|ref|YP_794775.1| cytosine/adenosine deaminase [Lactobacillus brevis ATCC 367]
 gi|116098595|gb|ABJ63744.1| tRNA-adenosine deaminase [Lactobacillus brevis ATCC 367]
          Length = 183

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 44/123 (35%), Gaps = 17/123 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
             +M  AL  +            +  +IV DG +IGRG       +    HAE++A+EEA
Sbjct: 11  RHYMEEALFEAEQAA--VIGEVPIGSVIVHDGQIIGRGHNLREHGHDATLHAEIRAIEEA 68

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                         YVT+EPC        C+  II   I  V     DP           
Sbjct: 69  CATLQSWRLNDCQLYVTIEPCLM------CSGAIINARIPEVFYGARDPKAGAVDSLYAT 122

Query: 119 LSQ 121
           L+ 
Sbjct: 123 LTD 125


>gi|315606353|ref|ZP_07881369.1| tRNA-specific adenosine deaminase [Prevotella buccae ATCC 33574]
 gi|315252044|gb|EFU32017.1| tRNA-specific adenosine deaminase [Prevotella buccae ATCC 33574]
          Length = 147

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 56/151 (37%), Gaps = 17/151 (11%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M     D ++M  AL+ +            +  ++V  G +I R      T +    HAE
Sbjct: 1   MEQLEIDEQYMRKALQEAEAACQ--KGEIPIGAVVVCKGRIISRAHNLTETLHDVTAHAE 58

Query: 57  VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +QA+  A +   G      T YVT+EPC        CA  I    + R+V    D     
Sbjct: 59  MQAITAAADLLGGKYLTDCTLYVTVEPC------TMCAGAIGWAQVPRIVYGAPDEKRGY 112

Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
                  +  +  IV  ++E E +  +  + 
Sbjct: 113 RHYAPHAMHPRADIVGGILEDECRELMQKFF 143


>gi|269794974|ref|YP_003314429.1| pyrimidine reductase, riboflavin biosynthesis [Sanguibacter
           keddieii DSM 10542]
 gi|269097159|gb|ACZ21595.1| pyrimidine reductase, riboflavin biosynthesis [Sanguibacter
           keddieii DSM 10542]
          Length = 289

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 75/207 (36%), Gaps = 13/207 (6%)

Query: 132 SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191
                 L+A+   +  +R+ +   +  + D     A   S  I          +LRA +D
Sbjct: 42  EAMLSVLYAHPAPEPGRRTWVRANMVTTLDGAATGADGVSGAINDDADYRVFRVLRALAD 101

Query: 192 AILVGIGTVLAD--------DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
            +LVG GTV A+        D     R    +  +    I+     L      +      
Sbjct: 102 VVLVGAGTVRAEGYTPLSVPDGLSDLRAAAGRAPAIELAIVSRSGDLPGQITDLDQHPAG 161

Query: 244 PV--IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            V  I++T          +    + +      DL   L  L  RG+  +L EGG ++   
Sbjct: 162 TVPPIVLTTTSGAANLRGYPADRVVVTGDTDVDLTVALDALADRGLVRVLAEGGPSLLGD 221

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSP 328
            ++ + +D + L  S +V+G    P+P
Sbjct: 222 LVDGQHLDELCLTTSPLVVGG---PAP 245


>gi|75676735|ref|YP_319156.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Nitrobacter winogradskyi Nb-255]
 gi|74421605|gb|ABA05804.1| tRNA-adenosine deaminase [Nitrobacter winogradskyi Nb-255]
          Length = 148

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/108 (35%), Positives = 45/108 (41%), Gaps = 17/108 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEA-- 63
           FM  AL  +    G     P + C+IV+DG +I     R +T      HAEV AL  A  
Sbjct: 6   FMDMALEAAEKA-GQAGEVP-IGCVIVRDGEIIAAAGNRTLTDRDPTAHAEVLALRAAAH 63

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
               E   G   YVTLEPC        CA  I    IRR+     DP 
Sbjct: 64  VLGSERLTGCDLYVTLEPC------TMCAAAISFARIRRLYYGASDPK 105


>gi|50553008|ref|XP_503914.1| YALI0E13728p [Yarrowia lipolytica]
 gi|49649783|emb|CAG79507.1| YALI0E13728p [Yarrowia lipolytica]
          Length = 222

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 55/183 (30%), Gaps = 22/183 (12%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALE---- 61
           FM  AL  +   +        V C+ V +G VI RG+        G  HAE   +E    
Sbjct: 11  FMEEALEQAELSLNNNEV--PVGCVFVHNGKVIARGMNDTNKSLCGTRHAEFLGIEHILK 68

Query: 62  -EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
               +       YVT+EPC        CA  + +  I+ V     +      G  +   S
Sbjct: 69  THTADIFEEVDLYVTVEPCIM------CASALRQLKIKCVYYGCANDRFGGCGSVMSIHS 122

Query: 121 QKGII-----VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
            KG+             E  + L  +  ++ E       +    ++              
Sbjct: 123 DKGVDPTYKAYPGFYREEAIMLLRRFYCQENENAPTEKKENKKQRELKTAFQPFDFTKYV 182

Query: 176 GFI 178
              
Sbjct: 183 HSE 185


>gi|288931740|ref|YP_003435800.1| CMP/dCMP deaminase zinc-binding protein [Ferroglobus placidus DSM
           10642]
 gi|288893988|gb|ADC65525.1| CMP/dCMP deaminase zinc-binding protein [Ferroglobus placidus DSM
           10642]
          Length = 149

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 59/159 (37%), Gaps = 43/159 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S D  FM  A   ++    L     +V  +IVKD  ++  G                   
Sbjct: 4   SLDEYFMEIAKVVAKRSTCLRQ---NVGAVIVKDKRILSTGYNGAPMGLPHCLDIGCLRE 60

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G   +GAT Y T +PC        CA+ II 
Sbjct: 61  ELNVPSGERHELCRAVHAEQNAIIQAAVHGVSIKGATLYTTHQPCIM------CAKMIIN 114

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
            GI RVV      D     RGL++L + GI +D +   E
Sbjct: 115 AGIVRVVYGKRYAD----ERGLEFLKEAGIKIDYLPVEE 149


>gi|50312303|ref|XP_456184.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49645320|emb|CAG98892.1| KLLA0F24794p [Kluyveromyces lactis]
          Length = 597

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 12/137 (8%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEEAGEE 66
            +FM  A+  +R   G T T  +V  L+V    ++  G +    G  HAE  AL++   +
Sbjct: 446 RKFMELAIDEARN-CGETQTAFNVGALLVNGTDILSTGYSRELPGNTHAEQCALDKYFTK 504

Query: 67  ARGA------TAYVTLEPCS-HYGRSPPCAQFIIEC--GIRRVVVCVDDPDVR-VSGRGL 116
           + GA        Y T+EPCS     + PC   II+    I+ V V V +PD+   +    
Sbjct: 505 SEGAKLPDGTIIYTTMEPCSLRLSGNLPCVDRIIQTTGAIKTVFVGVMEPDIFVKNNTSY 564

Query: 117 QWLSQKGIIVDRMMESE 133
             L+Q GI    +   E
Sbjct: 565 HKLAQYGIDYILIPGYE 581


>gi|282899006|ref|ZP_06306988.1| Cytidine/deoxycytidylate deaminase, zinc-binding region protein
           [Cylindrospermopsis raciborskii CS-505]
 gi|281196146|gb|EFA71061.1| Cytidine/deoxycytidylate deaminase, zinc-binding region protein
           [Cylindrospermopsis raciborskii CS-505]
          Length = 154

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 50/118 (42%), Gaps = 18/118 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG----GCPHAEVQALEEAGE 65
           MS AL+ ++   G     P V C+IV   G +IG+G            HAE+ A+  A  
Sbjct: 1   MSEALKLAQIA-GDAGEVP-VGCVIVNPQGNLIGQGENRKQRDQDPTAHAEIIAIRSAAR 58

Query: 66  EARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
             +       T YVTLEPC      P CA  II   ++ +V  VDDP        +  
Sbjct: 59  TLQNWHLDQCTLYVTLEPC------PMCAGAIIHARLQTLVYAVDDPKTGAIRTVINI 110


>gi|224367573|ref|YP_002601736.1| putative cytidine/deoxycytidylate deaminase [Desulfobacterium
           autotrophicum HRM2]
 gi|223690289|gb|ACN13572.1| putative cytidine/deoxycytidylate deaminase [Desulfobacterium
           autotrophicum HRM2]
          Length = 181

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 21/132 (15%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC-------- 52
           M  +  DA +M  AL  ++           V  +IV DG V+ +G     G         
Sbjct: 4   MIETLNDAYYMELALASAQKA--FDQGEFPVGAVIVCDGRVVAQGHRVGTGALTGRPSEI 61

Query: 53  PHAEVQALEE-----AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
            HAE++AL+E      G +  GA  + T+EPC        C   II  GI+++V   +DP
Sbjct: 62  DHAEMRALKELEGLPLGFDPAGAVIFSTMEPCLM------CFSAIILSGIKKIVYAYEDP 115

Query: 108 DVRVSGRGLQWL 119
               +   L  L
Sbjct: 116 MGGGTCCDLGQL 127


>gi|116493223|ref|YP_804958.1| tRNA-adenosine deaminase [Pediococcus pentosaceus ATCC 25745]
 gi|116103373|gb|ABJ68516.1| tRNA-adenosine deaminase [Pediococcus pentosaceus ATCC 25745]
          Length = 161

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 17/122 (13%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
            +M+ A++ +++   +      +  ++V DG +IGRG      +     HAEV A+ EA 
Sbjct: 11  FYMNEAIKEAQFAKMIDEV--PIGAVVVHDGKIIGRGHNLREHSQDSTTHAEVLAITEAC 68

Query: 65  EEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
              +         +VT+EPC     +      II   + +V     DP           L
Sbjct: 69  AYLKSWRLWDCQLFVTIEPCLMCSGT------IINSQLPQVFFGARDPKAGAVRSLYTVL 122

Query: 120 SQ 121
             
Sbjct: 123 ED 124


>gi|118602884|ref|YP_904099.1| CMP/dCMP deaminase, zinc-binding [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
 gi|118567823|gb|ABL02628.1| CMP/dCMP deaminase, zinc-binding protein [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 156

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 17/124 (13%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
           +  DA++M+ A+  ++      +  P V  +++++  +I               HAE+Q 
Sbjct: 5   APTDAQWMTLAIEQAKQAQ-KVNEVP-VGAILIQNNQLISSAYNQPISNNDPTAHAEIQL 62

Query: 60  LEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           L  AG++         T YVTLEPC        C   I+   +  +V    D    V G 
Sbjct: 63  LRAAGKQLNNYRLYDTTLYVTLEPC------TMCLGAIVHARVSYIVFGAYDQKSGVCGS 116

Query: 115 GLQW 118
            +  
Sbjct: 117 CINL 120


>gi|330892455|gb|EGH25116.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. mori str. 301020]
 gi|330894515|gb|EGH27176.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 169

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 20/129 (15%)

Query: 30  SVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            V  ++V++G +IGRG      A     HAE+ A+ +A          G+T YVTLEPCS
Sbjct: 33  PVGAVVVQNGEIIGRGYNCPISASDPSAHAEMVAVRDAARALDNYRLPGSTLYVTLEPCS 92

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  CA  I+   + RVV    +P   +     Q     +L+ + +    ++  E  
Sbjct: 93  M------CAGLIVHSRVARVVYGALEPKAGIVQSQGQFFSQGFLNHRVLFEGGVLSEECG 146

Query: 136 IFLHAYLTR 144
             L  +   
Sbjct: 147 AMLSEFFRM 155


>gi|20092219|ref|NP_618294.1| cytidine/deoxycytidylate deaminase family protein [Methanosarcina
           acetivorans C2A]
 gi|19917452|gb|AAM06774.1| cytidine/deoxycytidylate deaminase family protein [Methanosarcina
           acetivorans C2A]
          Length = 162

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 50/161 (31%), Gaps = 33/161 (20%)

Query: 2   PVSSFDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCP 53
            +S  D  FM  A+  S    +   G          +I K+G +I               
Sbjct: 5   NMSEKDTLFMRRAIELSLESVKKGGG------PFGAVITKNGKIISESCNQVTVLNDPTA 58

Query: 54  HAEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+ A+ EA       + +G   Y + EPC      P C   I    I RV       D
Sbjct: 59  HAEISAIREAARKLNAPDLKGCEIYASCEPC------PMCLGAIYWARIDRVFFANTRED 112

Query: 109 VRV--------SGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
                           + L ++ I   +++  E       +
Sbjct: 113 ADNIGFDDSFIYEEIPRSLRERSIEFRQLLREEALEAFREW 153


>gi|297156476|gb|ADI06188.1| hypothetical protein SBI_03067 [Streptomyces bingchenggensis BCW-1]
          Length = 271

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 64/181 (35%), Gaps = 14/181 (7%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD--DPELT 208
            +   +  S D         S  ++         +LR  +DA++VG  TV  +   P   
Sbjct: 52  WLRANMVSSLDG-AAHHDGRSQQLSSAADMRIFGVLRGLADAVVVGAETVRREGYRPP-R 109

Query: 209 CRLN-----GLQEHSPMRI--ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
            R         Q   P+    ++     L     +    L+  +++           A R
Sbjct: 110 AREAFVARRAAQGRPPVAAIAVVSASLDLDFSLPLFTEPLVPTLVVTGAQAPADRLAAAR 169

Query: 262 KKNINIIYCD---CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
           +    ++        D  +++  L  RG+T LL EGG  +   F  + ++D + L  + +
Sbjct: 170 RAGAEVVLAGEGAGVDPARVVAALAERGLTRLLSEGGPKLLGQFAAAGVLDELCLSLAPL 229

Query: 319 V 319
           +
Sbjct: 230 I 230


>gi|71892310|ref|YP_278044.1| tRNA-specific adenosine deaminase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71796416|gb|AAZ41167.1| tRNA-specific adenosine deaminase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 155

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 22/157 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
           + + D  +M  A+  +     +     SV  +++++G +I  G  +    +    HAE+ 
Sbjct: 4   IENVDTIWMRHAIALAAHAEII--GEISVGAVLIQNGKLISYGWNSSIICHDPSAHAEIV 61

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL   G+        G T YVTLEPC        C   II   + R+V    +       
Sbjct: 62  ALRTGGKVLGNYRLLGTTLYVTLEPCMM------CIGAIIHARVYRLVCGAKNSKTEQRS 115

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQ 145
                L          +   ++E E    L+ +  RQ
Sbjct: 116 WLKNTLRHPMNNHHVFLTTGVLEKECAYQLNKFFKRQ 152


>gi|288561455|ref|YP_003424941.1| CMP/dCMP deaminase [Methanobrevibacter ruminantium M1]
 gi|288544165|gb|ADC48049.1| CMP/dCMP deaminase [Methanobrevibacter ruminantium M1]
          Length = 155

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 26/167 (15%)

Query: 8   ARFMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
            +FM  A++ +       GL      +  ++VK+  +I RG            HAE+ A+
Sbjct: 3   QKFMEEAIKEAEISSKEGGL-----PIGAVLVKENQIISRGHNRLIQKDSSILHAEMDAI 57

Query: 61  EEAG----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           E AG    E+ +  T Y TL PC      P C+  +I   I RVV+  +   +       
Sbjct: 58  ENAGRLNHEDYQKCTLYTTLSPC------PMCSGAVILYNIPRVVIGDNQTLMGAE---- 107

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163
           + L   G+ +  + + + K     ++        +   K+  + +  
Sbjct: 108 KLLKDNGVEIIVLNDDKCKELFEDFVNNNPGIWENELAKVGNTTELK 154


>gi|325856324|ref|ZP_08172040.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella denticola CRIS 18C-A]
 gi|325483508|gb|EGC86480.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella denticola CRIS 18C-A]
          Length = 144

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 51/146 (34%), Gaps = 17/146 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  +M  AL  +            V  ++V    +I R      T      HAE+QA+  
Sbjct: 4   DLYYMQRALDEA--GAAYREGEIPVGAVVVCRDRIIARAHNLTETLNDVTAHAEMQAITM 61

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G+  +  T YVT+EPC        CA  I     RR+V    D          +
Sbjct: 62  AAGELGGKYLQDCTLYVTVEPC------VMCAGAIGWAQFRRIVYGCPDEKRGYHLYAPK 115

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLT 143
            L  +  +   +M  E K  +  +  
Sbjct: 116 ALHPRADVTYGVMGEECKALMRRFFQ 141


>gi|255530772|ref|YP_003091144.1| zinc-binding CMP/dCMP deaminase [Pedobacter heparinus DSM 2366]
 gi|255343756|gb|ACU03082.1| CMP/dCMP deaminase zinc-binding [Pedobacter heparinus DSM 2366]
          Length = 160

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 16/118 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           M       +FM  A++ S  +V  T   P    +IVK+G VI +             HAE
Sbjct: 1   MEKRDQHEKFMKMAIQLSEENVLDTVGGP-FGAVIVKNGKVIAKSANKVTSTNDPTAHAE 59

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           V A+  A ++ +     G T Y + EPC      P C   I    I  +       D 
Sbjct: 60  VSAIRMACKKLKTFDLSGCTVYTSCEPC------PMCLSAIYWAKIDAIYFANTKDDA 111


>gi|331017345|gb|EGH97401.1| cytosine deaminase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 145

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 20/140 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGE 65
           FM AA+  ++  +GL      +  +IV  G +IGRG            H E+ ALE AG 
Sbjct: 4   FMQAAIDEAQ--LGLDEGGIPIGSVIVHAGKIIGRGHNRRVQEGSATRHGEMDALENAGR 61

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +     R A  Y TL PC+       C+  I+  GIR+V+V  +   +       + L  
Sbjct: 62  QPASVYREAVLYTTLSPCAM------CSGAILLYGIRKVIVGENQSFMGEE----ELLRS 111

Query: 122 KGIIVDRMMESEGKIFLHAY 141
           +G+ ++ + +   K  +  +
Sbjct: 112 RGVQIEVLDDERCKHMMQGF 131


>gi|288926032|ref|ZP_06419961.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
           buccae D17]
 gi|288337252|gb|EFC75609.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
           buccae D17]
          Length = 147

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 56/151 (37%), Gaps = 17/151 (11%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M     D ++M  AL+ +            +  ++V  G +I R      T +    HAE
Sbjct: 1   MEQLEVDEQYMRKALQEAEAACQ--KGEIPIGAVVVCKGRIISRAHNLTETLHDVTAHAE 58

Query: 57  VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +QA+  A +   G      T YVT+EPC        CA  I    + R+V    D     
Sbjct: 59  MQAITAAADLLGGKYLTDCTLYVTVEPC------TMCAGAIGWAQVPRIVYGAPDEKRGY 112

Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
                  +  K  IV  ++E E +  +  + 
Sbjct: 113 RHYAPHAMHPKADIVGGILEDECRELMQKFF 143


>gi|258649234|ref|ZP_05736703.1| tRNA-specific adenosine deaminase [Prevotella tannerae ATCC 51259]
 gi|260850414|gb|EEX70283.1| tRNA-specific adenosine deaminase [Prevotella tannerae ATCC 51259]
          Length = 143

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 51/147 (34%), Gaps = 17/147 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
           D  +M  AL  ++           V  +IV    +I R             HAE+QA+  
Sbjct: 3   DQEYMQKALIEAKQA--FEEGEVPVGAVIVCRDRIIARAHNLTERLTDVTAHAEMQAITA 60

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G      T YVT+EPC        CA  +    + R+V    DP    S     
Sbjct: 61  AANALGGKYLTDCTLYVTVEPC------VMCAGALAWAQLSRIVYGASDPKRGFSVFAPN 114

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTR 144
            L  +  + + ++  E    +  +  R
Sbjct: 115 ALHPRTEVTEGVLAEECANLMKDFFQR 141


>gi|282164705|ref|YP_003357090.1| cytosine deaminase [Methanocella paludicola SANAE]
 gi|282157019|dbj|BAI62107.1| cytosine deaminase [Methanocella paludicola SANAE]
          Length = 145

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 20/149 (13%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAG 64
            FM AAL  ++   GL      +  ++V DG+++GRG       G    HAE+  LE AG
Sbjct: 3   EFMRAALDEAKK--GLREGGIPIGSVLVVDGVIVGRGHNRRVQQGSTIKHAEMDCLESAG 60

Query: 65  ----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                  R +T Y TL PC        C+  ++  GI +VV+  +           +++ 
Sbjct: 61  RLRAATYRKSTLYSTLSPCDM------CSGAVLLYGIPKVVIGENMNFKGPE----EYVR 110

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            +G+ V  + + E    +  ++ +     
Sbjct: 111 DRGVDVTVLNDQECIELMSDFIEKNPGLW 139


>gi|91201071|emb|CAJ74129.1| strongly similar to fungal cytosine deaminase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 145

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 18/147 (12%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
           RFM  A+  ++  +        +  ++VKDG +IGRG            HAE+  L  +G
Sbjct: 3   RFMRTAIEEAKQGLLEGG--IPIGSVLVKDGEIIGRGHNKRVQENNPIAHAEIDCLVNSG 60

Query: 65  --EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
              +  G T Y TL PC        CA  I++  I+++VV   +          +++   
Sbjct: 61  RVGKYSGTTLYSTLMPCY------LCAGAIVQFRIKKIVVGESETFSGAK----EFMELH 110

Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKR 149
           G+ +  +   E K  +  ++    E  
Sbjct: 111 GVEIIDLNIEECKQLMKDFIQNNPELW 137


>gi|327312523|ref|YP_004327960.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella denticola F0289]
 gi|326945985|gb|AEA21870.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella denticola F0289]
          Length = 144

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 51/146 (34%), Gaps = 17/146 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  +M  AL  +            V  ++V    +I R      T      HAE+QA+  
Sbjct: 4   DLYYMQRALDEA--GAAYREGEIPVGAVVVCRDRIIARAHNLTETLNDVTAHAEMQAITM 61

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G+  +  T YVT+EPC        CA  I     RR+V    D          +
Sbjct: 62  AAGELGGKYLQDCTLYVTVEPC------VMCAGAIGWAQFRRIVYGCPDEKRGYHLYAPK 115

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLT 143
            L  +  +   +M  E K  +  +  
Sbjct: 116 ALHPRADVTYGVMGEECKALMQRFFQ 141


>gi|254448832|ref|ZP_05062288.1| zinc-binding domain protein [gamma proteobacterium HTCC5015]
 gi|198261522|gb|EDY85811.1| zinc-binding domain protein [gamma proteobacterium HTCC5015]
          Length = 163

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 43/124 (34%), Gaps = 17/124 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M  AL  +          P V  ++V+   VI               HAE+Q L +
Sbjct: 9   DECYMQLALEQAELAA-QVGEVP-VGAVLVQGDEVIASAFNRPIAEHDPTAHAEIQVLRQ 66

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AG+          T YVTLEPC        C   I+   I R+V    +P +        
Sbjct: 67  AGQSQQNYRLCDTTLYVTLEPC------VMCVGAILHARIGRLVYAAAEPKMGAVDSAFS 120

Query: 118 WLSQ 121
            L  
Sbjct: 121 LLRD 124


>gi|73670513|ref|YP_306528.1| dCMP deaminase [Methanosarcina barkeri str. Fusaro]
 gi|72397675|gb|AAZ71948.1| dCMP deaminase [Methanosarcina barkeri str. Fusaro]
          Length = 157

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 54/160 (33%), Gaps = 33/160 (20%)

Query: 3   VSSFDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPH 54
           +S  D  FM  A+  S    +   G          +IV++G ++               H
Sbjct: 1   MSDNDFLFMKRAIELSLENVKKGGG------PFGAVIVRNGEILAESCNMVTALNDPTAH 54

Query: 55  AEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AE+  + EA  +       G T Y + EPC      P C   I    I +VV      D 
Sbjct: 55  AEINVIREAARKLETFDLSGCTIYASCEPC------PMCLGAIYWARIGKVVFANTASDA 108

Query: 110 R--------VSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
           +        +     + L ++ I   +++  E      A+
Sbjct: 109 QKIGFADSLIYSEIARPLQERNIEFRQLLRKEALKAFKAW 148


>gi|58336712|ref|YP_193297.1| cytidine-deoxycytidylate deaminase [Lactobacillus acidophilus NCFM]
 gi|58254029|gb|AAV42266.1| cytidine-deoxycytidylate deaminase [Lactobacillus acidophilus NCFM]
          Length = 168

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 25/157 (15%)

Query: 3   VSSFDAR--FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHA 55
           + S D +  +M  A+  ++           +  ++V   G +IG G            HA
Sbjct: 1   MLSSDEKKTYMQLAIDKAKEAEKQ--GEVPIGAVVVDPTGKIIGTGYNRRELDEDSTQHA 58

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A++EA +          + +VTLEPC      P CA  II   I+ V     DP   
Sbjct: 59  EMIAIKEACKNLGMWRLIDCSLFVTLEPC------PMCAGAIINSRIKDVYFGALDPKAG 112

Query: 111 VSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
             G  +   +          +  +   +    L  + 
Sbjct: 113 ACGSVVDLFAVERFNHHPHAIRGLYRDQCAQMLKDFF 149


>gi|298490596|ref|YP_003720773.1| CMP/dCMP deaminase zinc-binding protein ['Nostoc azollae' 0708]
 gi|298232514|gb|ADI63650.1| CMP/dCMP deaminase zinc-binding protein ['Nostoc azollae' 0708]
          Length = 143

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 18/145 (12%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAG-- 64
           M AA+  ++   G       +  ++V++G ++G+G       G P  HAE+  L  AG  
Sbjct: 5   MQAAISEAK--QGRDEGGIPIGSVLVRNGKILGKGHNKRVQDGDPVTHAEIDCLRNAGRL 62

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
              +G T Y TL PC        CA  +++ GI++V+               +++   G+
Sbjct: 63  GNYKGITLYSTLMPCY------LCAGAVVQFGIKKVIAGESRTFPGAK----EFMVSHGV 112

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKR 149
            V  +   E K  ++ ++T + E  
Sbjct: 113 EVIDLNLDECKQMMNEFITEKPELW 137


>gi|237748635|ref|ZP_04579115.1| tRNA-specific adenosine deaminase [Oxalobacter formigenes OXCC13]
 gi|229379997|gb|EEO30088.1| tRNA-specific adenosine deaminase [Oxalobacter formigenes OXCC13]
          Length = 171

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            V  ++V DG +I RG     TA+    HAE+ AL  A              YVTLEPCS
Sbjct: 24  PVGAVVVLDGQIIARGFNQPITAHDPTAHAEIVALRNAARFCGNYRLPDCELYVTLEPCS 83

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGK 135
                  C   +I   ++RV+    +P     G  +       L+    +   ++E+E  
Sbjct: 84  M------CVGAMIHARLKRVIFGAKEPRTGACGSIIDLFAQNELNHHTTVTGGVLENESS 137

Query: 136 IFLHAYL 142
           + L  + 
Sbjct: 138 VLLKTFF 144


>gi|145594810|ref|YP_001159107.1| deaminase-reductase domain-containing protein [Salinispora tropica
           CNB-440]
 gi|145304147|gb|ABP54729.1| bifunctional deaminase-reductase domain protein [Salinispora
           tropica CNB-440]
          Length = 419

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 87/252 (34%), Gaps = 23/252 (9%)

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
           G  PP    + E     V      P      R        G++   + E E    LH   
Sbjct: 129 GTRPP--DRLTERLAELVWRLAGPPPPAAGSRIRDMWPTAGLV--DLDEDE----LHERY 180

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
                 R H+ L    S D  +      S  +T    +    L++ ++D +L+G GT+ A
Sbjct: 181 APPAHNRGHVRLVTVSSIDG-LAAVNGSSAALTSSGDQRVYRLIKREADLLLLGAGTIRA 239

Query: 203 DD--------PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA-----PVIIVT 249
           +         PE+  R        P   ++     L L   + + +        P++IV 
Sbjct: 240 EQYGQTALSAPEIARRRANGLPPYPAVAVVTRSLDLDLSGPLFQHSAAGHTHPRPILIVP 299

Query: 250 ENDDPVLALAF-RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
                    A      + +      DL + +  L  RG   ++ EGG ++A    ++ L+
Sbjct: 300 AAAAAERGTAVAEAAELLVAGEHDVDLHQAIQTLRQRGHRRIVCEGGPSLAGQLAHADLL 359

Query: 309 DSIILYRSQIVI 320
           D I +  +  ++
Sbjct: 360 DEICMTIAPQLL 371


>gi|325958148|ref|YP_004289614.1| Cytosine deaminase [Methanobacterium sp. AL-21]
 gi|325329580|gb|ADZ08642.1| Cytosine deaminase [Methanobacterium sp. AL-21]
          Length = 157

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 20/154 (12%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---AYGGC-PHAEVQA 59
           S  D +FM  AL+ ++    L S    +  ++VKDG+++GRG            HAE+  
Sbjct: 7   SEDDYKFMMEALKEAKKS--LESGGIPIGAILVKDGVIVGRGHNNLLQKNSTILHAEMDC 64

Query: 60  LEEA----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +E +    G++ + +T Y TL PC     +      II   I RVV+  ++         
Sbjct: 65  IENSGRLKGKDYKRSTLYTTLSPCEMCSGT------IILYKISRVVIGENENLKGPE--- 115

Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            + L + GI +  +   E K  L +Y+ +  +  
Sbjct: 116 -KCLIESGIELKNLDLPECKEMLGSYILQNPDLW 148


>gi|218441962|ref|YP_002380291.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 7424]
 gi|218174690|gb|ACK73423.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 7424]
          Length = 158

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 16/116 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           +S+ + +FM+ A+  S   + L    P    +IVK+G +I +G            HAEV 
Sbjct: 1   MSNINDQFMAEAIALSFEGMRLGEGGP-FGAVIVKEGKIIAKGYNQVISSNDPTAHAEVV 59

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           A+  A +     + +G   Y + EPC      P C   I    + ++       D 
Sbjct: 60  AIRHACQVLQNFDLKGCELYTSCEPC------PMCLGAIYWARLDKIYYGNSKIDA 109


>gi|302307964|ref|NP_984770.2| AEL091Cp [Ashbya gossypii ATCC 10895]
 gi|299789245|gb|AAS52594.2| AEL091Cp [Ashbya gossypii ATCC 10895]
          Length = 609

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 12/128 (9%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEEAGEEAR 68
           FM  A+  ++       T+ SV  ++V    ++  G +    G  HAE  AL++  E+ +
Sbjct: 465 FMRLAIEQAKK-CPPAKTSFSVGAVLVNGTEILATGYSRELEGNTHAEQCALQKYFEQHK 523

Query: 69  ------GATAYVTLEPCS-HYGRSPPCAQFI--IECGIRRVVVCVDDPDVR-VSGRGLQW 118
                 G   Y T+EPCS     + PC + I   +  I  V V V +PD    +      
Sbjct: 524 TDKVPIGTVIYTTMEPCSLRLSGNKPCVERIICQQGNITAVFVGVLEPDNFVKNNTSRAL 583

Query: 119 LSQKGIIV 126
           L Q GI  
Sbjct: 584 LEQHGIDY 591


>gi|241764554|ref|ZP_04762572.1| CMP/dCMP deaminase zinc-binding [Acidovorax delafieldii 2AN]
 gi|241365998|gb|EER60615.1| CMP/dCMP deaminase zinc-binding [Acidovorax delafieldii 2AN]
          Length = 454

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 20/162 (12%)

Query: 30  SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  ++VKDG VI  G  A    +    HAE+ AL  A E        G T YVTLEPC+
Sbjct: 18  PVGAVVVKDGQVIATGRNAPVQSHDPTAHAEIVALRAAAEQLGNYRLDGCTLYVTLEPCA 77

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGK 135
                  C+  ++   + RVV    DP    +G  L       L+    +   ++  +  
Sbjct: 78  M------CSGAMLHARVPRVVFGAVDPKTGAAGSVLDLFGYTVLNHHTQVQGGVLAHDCG 131

Query: 136 IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
             L  +  ++  ++          +D+ +         +  +
Sbjct: 132 ALLSTFFRQRRAQQRSEAQARHPLRDDALRTPDAAFADLPDY 173


>gi|282891324|ref|ZP_06299826.1| hypothetical protein pah_c050o112 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498821|gb|EFB41138.1| hypothetical protein pah_c050o112 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 176

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 19/126 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
             D +FM  AL+ +          P V  ++V +G +I RG            HAEV  +
Sbjct: 12  DEDEKFMLEALKQAWKA-FQAKEVP-VGAILVHEGKIIARGYNQVELLRDATAHAEVLCI 69

Query: 61  EEAGEEA------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
             AGE A           Y T+EPC+       CA  ++   +  ++    D     +G 
Sbjct: 70  T-AGEAALSNWRLSQCKLYCTIEPCAM------CAGAMLLSRVEELIWGAPDIRHGANGS 122

Query: 115 GLQWLS 120
            +  L+
Sbjct: 123 WVNLLN 128


>gi|225181888|ref|ZP_03735323.1| CMP/dCMP deaminase zinc-binding [Dethiobacter alkaliphilus AHT 1]
 gi|225167402|gb|EEG76218.1| CMP/dCMP deaminase zinc-binding [Dethiobacter alkaliphilus AHT 1]
          Length = 158

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 56/150 (37%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           D  FM  AL+ ++           +  ++V+DG +I R             HAE+  L E
Sbjct: 3   DQDFMREALKEAQLA--FEKGEIPIGAVLVRDGNIIARDHNRREELDDPTAHAEILVLRE 60

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL- 116
           AG    G      T YVT+EPC      P CA  +++  + RVV    D           
Sbjct: 61  AGRTLGGWRLPNTTLYVTIEPC------PMCAGGLVQARVARVVYGAADIKAGAVHSLYT 114

Query: 117 ----QWLSQKGIIVDRMMESEGKIFLHAYL 142
               + L+ +  +   ++  E    +  + 
Sbjct: 115 VTEDERLNHRLEVTGGVLAEECADIMRTFF 144


>gi|212550942|ref|YP_002309259.1| cytosine/adenosine deaminase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549180|dbj|BAG83848.1| putative cytosine/adenosine deaminase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 146

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 17/149 (11%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
           +   D  +M  AL  ++           +  +IV D  +I R      T      HAE+Q
Sbjct: 1   MLQEDEYYMKQALLEAQKA--FEKAEVPIGAVIVSDKRIIARSHNLTETLNDTTAHAEMQ 58

Query: 59  ALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+  A     G+       YVT+EPC      P CA  +    I+R+V  + D       
Sbjct: 59  AITAASIALGGKYLTNCVLYVTVEPC------PMCAGALAWAQIKRIVYGIKDEKRGYHK 112

Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
                L  K  +  +++  E    +  + 
Sbjct: 113 ITPFILHPKTKVTSKILAEESGFLMKKFF 141


>gi|282891755|ref|ZP_06300236.1| hypothetical protein pah_c197o065 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498339|gb|EFB40677.1| hypothetical protein pah_c197o065 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 161

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 34/111 (30%), Gaps = 15/111 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  A+  SR       T      +IVKDG +I  G            HAE+ A+ EA
Sbjct: 7   EEFMKRAIALSRKASIEEKTGGVFGAVIVKDGKIIAEGYNQVLKHNDPTWHAEMHAIREA 66

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
                     G   Y + E C      P C        I  +       D 
Sbjct: 67  CKKLGKPHLEGCDLYTSAECC------PMCLSAAYWAHIDHIYYAATTHDA 111


>gi|206603205|gb|EDZ39685.1| Putative zinc-binding cytidine/deoxycytidylate deaminase
           [Leptospirillum sp. Group II '5-way CG']
          Length = 162

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 20/114 (17%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTN-PSVACLIVK-DGIVIGRGVTAYGGCP----HAEVQ 58
           + D R+M+ AL  ++  +     N   +  L+V  +G V+GRG     G      HAE+ 
Sbjct: 10  NMDERWMTEALSEAKTAM---KKNEIPIGALLVDGNGTVLGRGHNQRIGSMDPTAHAEIV 66

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           AL  +G   +     G T YVT+EPC        C   ++E  +  VV  + +P
Sbjct: 67  ALRSSGLHVKNYRLPGTTLYVTVEPCLM------CFGALLEARVETVVFGIREP 114


>gi|89889508|ref|ZP_01201019.1| cytosine/adenosine deaminase [Flavobacteria bacterium BBFL7]
 gi|89517781|gb|EAS20437.1| cytosine/adenosine deaminase [Flavobacteria bacterium BBFL7]
          Length = 149

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 57/146 (39%), Gaps = 18/146 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE- 62
             FM  AL+ ++    L      V  +IV    +I +G     T      HAE+QA+   
Sbjct: 8   EYFMKKALQEAQTA--LDRGEIPVGAVIVTQNRIIAKGHNLTETLTDVTAHAEMQAITAG 65

Query: 63  ----AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                G+  +  T YVTLEPC        CA  +    I  +V    D   R   +    
Sbjct: 66  ASFLGGKYLKDCTLYVTLEPC------QMCAGALYWSQISNIVYGARDEH-RGYLKMGTQ 118

Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTR 144
           L  K  +V  ++E E    ++ + TR
Sbjct: 119 LHPKTKVVSGILEEECSAIINEFFTR 144


>gi|307151761|ref|YP_003887145.1| Guanine deaminase [Cyanothece sp. PCC 7822]
 gi|306981989|gb|ADN13870.1| Guanine deaminase [Cyanothece sp. PCC 7822]
          Length = 158

 Score = 76.5 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 16/116 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           +S    +FM+ A+  S   + L    P    +IVK+  +I +G            HAEV 
Sbjct: 1   MSDIHHQFMAEAIALSFEGMRLGKGGP-FGAVIVKEHKIIAKGYNQVTSTNDPTAHAEVV 59

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           A+ +A +     E +G   Y + EPC      P C   I    + +V       D 
Sbjct: 60  AIRQACQLLQTFELKGCELYTSCEPC------PMCLAAIYWASVDKVYYANTKVDA 109


>gi|257487178|ref|ZP_05641219.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|331009206|gb|EGH89262.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 169

 Score = 76.5 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 20/129 (15%)

Query: 30  SVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            V  ++V++G +IGRG      A     HAE+ A+ +A          G+T YVTLEPCS
Sbjct: 33  PVGAVVVQNGEIIGRGYNCPISASDPSAHAEMVAVRDAARALDNYRLPGSTLYVTLEPCS 92

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  CA  I+   + RVV    +P   +     Q     +L+ + +    ++  E  
Sbjct: 93  M------CAGLIVHSRVARVVYGALEPKAGIVQSQGQFFSQGFLNHRVLFEGGVLSEECG 146

Query: 136 IFLHAYLTR 144
             L  +   
Sbjct: 147 AMLSEFFRM 155


>gi|333029805|ref|ZP_08457866.1| CMP/dCMP deaminase zinc-binding [Bacteroides coprosuis DSM 18011]
 gi|332740402|gb|EGJ70884.1| CMP/dCMP deaminase zinc-binding [Bacteroides coprosuis DSM 18011]
          Length = 145

 Score = 76.5 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 17/149 (11%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
           +   D+ FM  AL+ +   + +      V  ++V  G VI R             HAE+Q
Sbjct: 1   MGHDDSYFMKMALQEAESAMKM--GEIPVGAVVVSHGQVIARAHNMTERLTDVTAHAEMQ 58

Query: 59  ALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+  A     G+     T YVTLEPC        CA  I    + ++V+  +D       
Sbjct: 59  AITMAADLLGGKYLSDCTLYVTLEPC------VMCAGAISWAQLGKLVIGANDSKRGYKL 112

Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
                L  K  +++ ++  +    L ++ 
Sbjct: 113 LAPDVLHPKTEVIEGVLADKSTEMLQSFF 141


>gi|224006712|ref|XP_002292316.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220971958|gb|EED90291.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 777

 Score = 76.5 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 73/208 (35%), Gaps = 31/208 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTS-----TNPSVACLIV-KDGIVIGRGVTAYGGCPHAEV 57
           +  D   M  A+   +   G          P    ++V KDG ++G+G + Y G  HA  
Sbjct: 178 TKHDKAMMRQAIMMVQSSGGERGSHGPFPRPVAGAVLVAKDGRILGKGRSTYAG--HAVE 235

Query: 58  QALEEAGEEARG--------------------ATAYVTLEPCSHYGRS--PPCAQFIIEC 95
            A +EAG  A                      +T YVTLEP +       PP  Q +   
Sbjct: 236 FAFKEAGINATPLREWCVAWPSDSKFRKDISESTLYVTLEPSNEGQGEEKPPITQLVEMA 295

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITL 154
           GI R+V+   DP    +  G   L   G+ +   +++ E +  +  Y      K   +  
Sbjct: 296 GIPRLVIGCQDPVPENAAEGAGRLHAAGVSVTMGILQGECQDLIKEYTALCNTKIQRMAR 355

Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQ 182
           +        +G   C  +      +  +
Sbjct: 356 QHMKRFGRPMGHLHCSVIDSDDAEAFVR 383


>gi|290969052|ref|ZP_06560587.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Megasphaera genomosp. type_1 str. 28L]
 gi|290781008|gb|EFD93601.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Megasphaera genomosp. type_1 str. 28L]
          Length = 157

 Score = 76.5 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 50/144 (34%), Gaps = 22/144 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
           + D  +M  AL  +            +  +IV +  +I R      T      HAE+ A+
Sbjct: 2   TLDELYMGKALAEAETA--FAVEEIPIGAVIVHENTIIARAYNLRETLPCATAHAELLAI 59

Query: 61  EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           E+A          G T YVT EPC      P CA  I+   + R+V    DP        
Sbjct: 60  EKACRHLNRWRLSGCTLYVTTEPC------PMCAGAIVNSRLDRLVYGCPDPKAGAVHTL 113

Query: 116 LQW-----LSQKGIIVDRMMESEG 134
                   L+ +  +   +   E 
Sbjct: 114 FHLTDHPRLNHRVAVTAGIRADEC 137


>gi|269302803|gb|ACZ32903.1| cytidine/deoxycytidylate deaminase family protein [Chlamydophila
           pneumoniae LPCoLN]
          Length = 155

 Score = 76.5 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 50/147 (34%), Gaps = 21/147 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
             D  FM  A + +R           V C+IVKD  +I R   +         HAE+  +
Sbjct: 2   EKDIFFMQQAFKEARKA--YDQDEVPVGCVIVKDDKIIARAHNSVEKLKDATAHAEILCI 59

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A ++           Y TLEPC        CA  I    I R+V    D  +   G  
Sbjct: 60  GSAAQDLDNWRLLDTVLYCTLEPCLM------CAGAIQLARIPRIVWAAPDVRLGAGGSW 113

Query: 116 LQWLSQ----KGIIVDRMMESEGKIFL 138
           +   ++      +     + SE    L
Sbjct: 114 VNIFTEKHPFHTVSCTGGVCSEEAEHL 140


>gi|120437789|ref|YP_863475.1| cytidine/deoxycytidylate deaminase family protein [Gramella
           forsetii KT0803]
 gi|117579939|emb|CAL68408.1| cytidine/deoxycytidylate deaminase family protein [Gramella
           forsetii KT0803]
          Length = 149

 Score = 76.5 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 55/145 (37%), Gaps = 18/145 (12%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  FM  AL  +          P V  ++V +  +I RG     T      HAE+QA+  
Sbjct: 7   DEYFMKKALEEAESA-YEKGEIP-VGVVVVINDKIIARGHNLTETLNDVTAHAEMQAITA 64

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G+  +  T Y+TLEPC        CA  +    I ++V   +D   R   +   
Sbjct: 65  AANFLGGKYLQNCTMYITLEPCQM------CAGALYWSQISKIVFGAEDS-QRGYRKFGV 117

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYL 142
            L  K  +   +M  E    L  + 
Sbjct: 118 QLHPKTEVKSGIMAEEASSILKRFF 142


>gi|78183929|ref|YP_376364.1| putative riboflavin-specific deaminase [Synechococcus sp. CC9902]
 gi|78168223|gb|ABB25320.1| putative riboflavin-specific deaminase [Synechococcus sp. CC9902]
          Length = 232

 Score = 76.5 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 82/228 (35%), Gaps = 27/228 (11%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA----- 202
           +R    L +A+S D  +  A  G+  + G   +  +    A +DA L+G GT+ A     
Sbjct: 15  ERPETRLVLAISLDGRLAPAEGGAAQLGGKGDRRVLDTALAWADACLMGAGTLRAHQSTC 74

Query: 203 ---DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
              D   L  R++  +   P  +++       L  +  +  L   ++          A  
Sbjct: 75  LIRDRALLQQRVDQGRSAQPTAVVVSRSDAFPLQWQFFRQPLERWLL----------APK 124

Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
              +  +          + L  L   GV  L + GGA++A   + +  VD++ L     +
Sbjct: 125 APAEGFDRWIPLGHSWPERLEALYACGVRRLALLGGASLAAEVLQADCVDALQLTLVPTL 184

Query: 320 IGE-------GGIPSPLEEGYLEKNFMCVRRDYFGS-DVCLEYIGKNL 359
           +G           P PL        + C   +  G  ++ L Y  + +
Sbjct: 185 LGGPHTWLPVDAKPLPLSMLGAGA-WSCDGLEDLGEGEMVLRYRRQRV 231


>gi|315605309|ref|ZP_07880353.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315312989|gb|EFU61062.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 451

 Score = 76.5 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG----CPHAEVQALEEAG- 64
           M  AL  +      T   P V  ++V   G +IGRG     G      HAEV AL EAG 
Sbjct: 1   MGKALFLANRAR-ETGDVP-VGAVVVDAGGRIIGRGWNCREGHHDPTGHAEVVALREAGC 58

Query: 65  ----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                   G T  VTLEPC        CA  I+   + RVV    DP    +G     L 
Sbjct: 59  ALGTWRLTGCTLVVTLEPC------TMCAGAILASRVDRVVFGAWDPKAGAAGSLRDVLR 112

Query: 121 QK 122
             
Sbjct: 113 DA 114


>gi|281421269|ref|ZP_06252268.1| tRNA-specific adenosine deaminase [Prevotella copri DSM 18205]
 gi|281404804|gb|EFB35484.1| tRNA-specific adenosine deaminase [Prevotella copri DSM 18205]
          Length = 148

 Score = 76.5 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 52/147 (35%), Gaps = 17/147 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
           D  +M  AL  +          P V  +IV    +I R             HAE+QA+  
Sbjct: 8   DEAYMRRALMEA-QAAFDEDEIP-VGAIIVCKDRIISRAHNLTEMLTDVTAHAEMQAITS 65

Query: 63  -----AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
                 G+  +  T YVT+EPC        CA  +    I RVV    D     +     
Sbjct: 66  GANMLGGKYLKDCTLYVTVEPC------VMCAGALGWAQISRVVYGASDEKRGYTKYAPD 119

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTR 144
            L  K  +   ++E E +  +  +  R
Sbjct: 120 ALHPKTTVTSGVLEDECRALMQDFFQR 146


>gi|149923193|ref|ZP_01911606.1| cytidine and deoxycytidylate deaminase zinc-binding domain protein
           [Plesiocystis pacifica SIR-1]
 gi|149815967|gb|EDM75483.1| cytidine and deoxycytidylate deaminase zinc-binding domain protein
           [Plesiocystis pacifica SIR-1]
          Length = 165

 Score = 76.5 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 58/146 (39%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEE 66
           M  A+         T  +  V  L+V+DG ++G G            HAEV A+ EA  +
Sbjct: 1   MRMAMALGAEAA--TRGDVPVGALVVRDGKILGVGFNTREQDHDPTGHAEVVAMREACRQ 58

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW--- 118
           AR     GAT YVTLEPC      P CA  ++   I R+V    D          Q    
Sbjct: 59  ARRWRLDGATLYVTLEPC------PMCAGTLVNTRIARLVYGAHDAKAGAVRSLYQLCED 112

Query: 119 --LSQKGIIVDRMMESEGKIFLHAYL 142
             L+ +  +V  ++  E    L  + 
Sbjct: 113 PRLNHRLEVVGGVLAEECAALLKDFF 138


>gi|146283335|ref|YP_001173488.1| cytidine/deoxycytidylate deaminase [Pseudomonas stutzeri A1501]
 gi|145571540|gb|ABP80646.1| cytidine/deoxycytidylate deaminase [Pseudomonas stutzeri A1501]
          Length = 145

 Score = 76.5 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
            V  ++V +G ++GRG       +    HAE+ A+  A +  +     G+T YVTLEPCS
Sbjct: 18  PVGAVLVHEGQIVGRGFNCPISRHDPSAHAEMVAIRAAAQALQNYRLPGSTLYVTLEPCS 77

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  CA  I+   ++RVV    +P   V     Q     +L+ + ++   ++  E  
Sbjct: 78  M------CAGLIVHSRVQRVVYGATEPKAGVVVSRGQFFDQGFLNHRVLVEGGVLAEECG 131

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 132 AVLSEFF 138


>gi|288917132|ref|ZP_06411502.1| bifunctional deaminase-reductase domain protein [Frankia sp. EUN1f]
 gi|288351501|gb|EFC85708.1| bifunctional deaminase-reductase domain protein [Frankia sp. EUN1f]
          Length = 276

 Score = 76.5 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 83/216 (38%), Gaps = 19/216 (8%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD----P 205
            H+      S D  I +    S  + G   +     LR  SD +LVG GTV A+D    P
Sbjct: 45  PHVRSNFVTSVDGAIEI-DGRSGGLGGPADRLVFRTLRWLSDVVLVGAGTVRAEDYGPVP 103

Query: 206 ELTCR-----LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
               R       GL    P+ ++      L   +++   A+  P+++ +E        A 
Sbjct: 104 VPAERQERRVAAGLAAVPPVAVV-SGRLDLDPQARLFGGAVR-PLLLTSEAAPARARRAL 161

Query: 261 RK-KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
               +I I      +   +L  L  RG+  +L EGG ++   F  + L+D   +  + ++
Sbjct: 162 EPVADIVICGERTVEPPAVLAALAARGLLRVLTEGGPSLHAQFAQAGLLDEACVTLAPVL 221

Query: 320 IGEGGI---PSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            G G +     P     L+   + V  +   SDV  
Sbjct: 222 AGPGRLGMMTGPAWAAPLDLRLVHVLEE---SDVLF 254


>gi|291614449|ref|YP_003524606.1| CMP/dCMP deaminase zinc-binding protein [Sideroxydans
           lithotrophicus ES-1]
 gi|291584561|gb|ADE12219.1| CMP/dCMP deaminase zinc-binding protein [Sideroxydans
           lithotrophicus ES-1]
          Length = 148

 Score = 76.5 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 55/146 (37%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE- 65
           M AAL  +R      +    V  ++V+DG++IG G  A    +    HAE+ AL +A + 
Sbjct: 1   MRAALDLARQAAQ--AGEVPVGAVVVRDGLIIGHGCNAPISRHDPSAHAEIAALRDAAQH 58

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW--- 118
                      +VTLEPC        C   +    I RVV    DP    +G        
Sbjct: 59  IGNYRLVDCELFVTLEPC------VMCVGAMFHARIARVVFGAQDPKTGAAGSVFNLFNE 112

Query: 119 --LSQKGIIVDRMMESEGKIFLHAYL 142
             L+    I   ++  E    L  + 
Sbjct: 113 TRLNHHARIHGGVLAEECGKVLSDFF 138


>gi|298243178|ref|ZP_06966985.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
           racemifer DSM 44963]
 gi|297556232|gb|EFH90096.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
           racemifer DSM 44963]
          Length = 287

 Score = 76.5 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 90/252 (35%), Gaps = 43/252 (17%)

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV---PITGFISKNQVHL--LRAQSDAILV 195
           +      +  ++      + D ++ +   G     PI+GF++ +   +  LRA +DAI+V
Sbjct: 35  FRLPLKTQPPYVIGNFVSTIDGVVSLNEQGHTGGGPISGFLASDHALMGVLRATADAIIV 94

Query: 196 GIGTVLADDP--ELTC--------------RLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
           G GT+  D+P    T               RL   +   P+ +++     + L+  + + 
Sbjct: 95  GAGTLR-DEPGHSWTAEYIYPAFAQEYRDLRLALGKTAPPLTVLITASGNIDLNQGLFQR 153

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL--------- 290
             +  +II T   +  +        + +     +    +      + + +L         
Sbjct: 154 GEVPVLIITTPEGEKCVRTKKIPSWVQLASVQPQQGGSI----RAQNILTLVEQACHGQL 209

Query: 291 -LVEGGAAVAHSFINSRLVDSIILYRSQIVIG---EGGIPSPLEEGYLEKN----FMCVR 342
            L EGG  + ++F++   +D + L  +  + G       P+ +   +             
Sbjct: 210 FLTEGGPQLLNAFLSEGQLDELFLTLAPQLAGHIHNDQRPAVVMGAHFAPERPLWSTLQS 269

Query: 343 RDYFGSDVCLEY 354
               GS + L Y
Sbjct: 270 VRLVGSHLFLRY 281


>gi|220910074|ref|YP_002485385.1| CMP/dCMP deaminase [Cyanothece sp. PCC 7425]
 gi|219866685|gb|ACL47024.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 7425]
          Length = 174

 Score = 76.5 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 48/120 (40%), Gaps = 18/120 (15%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT--AYGGCP--HAEVQALEEA 63
            +M  A+  +    G     P V  ++V   G ++G G       G P  HAE+ AL  A
Sbjct: 12  EWMEQAIALAEQA-GAAGEVP-VGAIVVSPQGELLGTGENRRERDGDPTAHAEILALRAA 69

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G++      +  T YV LEPC      P CA  I++  I  +V   DD         L  
Sbjct: 70  GQKLQTWYLKNCTLYVNLEPC------PMCAGAILQARIGLLVYGADDAKTGAIRTVLNL 123


>gi|261364637|ref|ZP_05977520.1| tRNA-specific adenosine deaminase [Neisseria mucosa ATCC 25996]
 gi|288567233|gb|EFC88793.1| tRNA-specific adenosine deaminase [Neisseria mucosa ATCC 25996]
          Length = 243

 Score = 76.5 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 22/156 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57
           P S     FM AAL  +     +      V  ++V D  +I          +    HAE+
Sbjct: 90  PTSFEMETFMRAALVQAEQSARI--GEIPVGAVVVADNQIIAAAHNTCVSDHDISRHAEI 147

Query: 58  QALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           +AL  AG   +         Y+TLEPC+       CA  II+  +RRV+    +P    +
Sbjct: 148 RALAVAGAALQNYRLDECDLYITLEPCAM------CASAIIQARVRRVIYGAAEPKTGAA 201

Query: 113 GRGLQ-----WLSQKGIIVDRMMESEGKIFLHAYLT 143
           G  +       L++   I   ++E E K  L A+  
Sbjct: 202 GSVVNLFANPLLNKHTAIKGGILEDECKDVLQAFFQ 237


>gi|125624632|ref|YP_001033115.1| hypothetical protein llmg_1843 [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493440|emb|CAL98414.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300071423|gb|ADJ60823.1| hypothetical protein LLNZ_09485 [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 155

 Score = 76.5 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 57/157 (36%), Gaps = 23/157 (14%)

Query: 1   MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
           M  +  +   FM+ AL+ ++      +    +  +IVKDG +I R             HA
Sbjct: 1   MNFTEEEKEFFMTEALKEAQKAA--ENEEVPIGVVIVKDGEIIARDFNRRELDGRATHHA 58

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           EV A+E A +            +VT+EPC        CA  I    I +V     +P   
Sbjct: 59  EVCAIEAANQAVGNWRLLDCALFVTIEPC------VMCAGAIGLARIPQVYFGATNPKFG 112

Query: 111 VSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
            +    Q L       +  +   ++E E    +  + 
Sbjct: 113 GTVSLYQILEDKRLNHRVQVESGILEYESAKIMQDFF 149


>gi|149236051|ref|XP_001523903.1| cytosine deaminase [Lodderomyces elongisporus NRRL YB-4239]
 gi|146452279|gb|EDK46535.1| cytosine deaminase [Lodderomyces elongisporus NRRL YB-4239]
          Length = 160

 Score = 76.5 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 64/152 (42%), Gaps = 19/152 (12%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALE 61
            D + M+ AL  ++         P   CLI KDG V+GRG       G P  H E+  LE
Sbjct: 14  DDKKGMAIALEQAQIS-YNEGGIPIGGCLIHKDGRVLGRGYNKRVQNGSPILHGEMSVLE 72

Query: 62  EAGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            AG       +  T Y TL PC+       C   I+  GI+RVV+  +D  V       +
Sbjct: 73  NAGRLPHSIYKDCTMYTTLSPCNM------CTGAILLYGIKRVVMGENDTFVGGE----E 122

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            L Q G+ +  + +   K  L  ++  + E  
Sbjct: 123 LLKQNGVELVNLQDEGCKEILTKFIQEKPECW 154


>gi|150004434|ref|YP_001299178.1| putative cytosine/adenosine deaminase [Bacteroides vulgatus ATCC
           8482]
 gi|212695454|ref|ZP_03303582.1| hypothetical protein BACDOR_05008 [Bacteroides dorei DSM 17855]
 gi|237708840|ref|ZP_04539321.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237724273|ref|ZP_04554754.1| cytosine deaminase [Bacteroides sp. D4]
 gi|265755901|ref|ZP_06090368.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|294775508|ref|ZP_06741020.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides vulgatus PC510]
 gi|149932858|gb|ABR39556.1| putative cytosine/adenosine deaminase [Bacteroides vulgatus ATCC
           8482]
 gi|212661991|gb|EEB22565.1| hypothetical protein BACDOR_05008 [Bacteroides dorei DSM 17855]
 gi|229437461|gb|EEO47538.1| cytosine deaminase [Bacteroides dorei 5_1_36/D4]
 gi|229457266|gb|EEO62987.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263233979|gb|EEZ19580.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|294450653|gb|EFG19141.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides vulgatus PC510]
          Length = 144

 Score = 76.5 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 54/149 (36%), Gaps = 17/149 (11%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
           + D  +M  AL  +            V  ++V    +IGRG     T      HAE+QA+
Sbjct: 2   ADDTYYMKQALMEAVKAA--EQGEVPVGAVVVCRDRIIGRGHNLTETLNDVTAHAEMQAV 59

Query: 61  EEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A     G      T YVT+EPC        CA  I      ++V   +DP        
Sbjct: 60  TAAANTLGGKYLNECTLYVTVEPC------VMCAGAIAWAQTGKLVFGAEDPKRGYQKYA 113

Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
              L  K I+V  ++  E    +  +  +
Sbjct: 114 PDALHPKTIVVKGILADECARLMKDFFKK 142


>gi|220909767|ref|YP_002485078.1| bifunctional deaminase-reductase domain-containing protein
           [Cyanothece sp. PCC 7425]
 gi|219866378|gb|ACL46717.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC
           7425]
          Length = 228

 Score = 76.5 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 77/223 (34%), Gaps = 13/223 (5%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV------- 200
           +R H T+ +A+S D  I      S        K+ +    A++DA+L G  T+       
Sbjct: 5   QRPHTTVVLAMSADGKIADRQRSSPQFGSTQDKSHLEARVAEADAVLFGATTLKSGGTAM 64

Query: 201 LADDPEL-TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP-VLAL 258
              +P L   R    +   P++I+      L+      +  +   ++             
Sbjct: 65  RVINPALIQHRQQEGKPAQPIQIVCTRTADLNPQLPFFRQPIPRWLLTTHLGATAWQTQP 124

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
            F +           D    LT     G+  L+V GG  +  S +   L+D   L    +
Sbjct: 125 GFEQVLTFESASGEIDWPAALTHFSQVGIQELVVLGGGELVASLLALDLLDDFWLTVCPL 184

Query: 319 VIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLEYIGK 357
           ++G    P+P+           +   +  +  G +V L Y  +
Sbjct: 185 LLGGSDAPTPVAGQGFLQAEAPHLELIGAEPVGGEVYLHYRRQ 227


>gi|15618909|ref|NP_225195.1| cytosine deaminase [Chlamydophila pneumoniae CWL029]
 gi|16752024|ref|NP_445390.1| cytidine/deoxycytidylate deaminase family protein [Chlamydophila
           pneumoniae AR39]
 gi|4377331|gb|AAD19138.1| cytosine deaminase [Chlamydophila pneumoniae CWL029]
 gi|8163513|gb|AAF73712.1| cytidine/deoxycytidylate deaminase family protein [Chlamydophila
           pneumoniae AR39]
          Length = 155

 Score = 76.5 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 50/147 (34%), Gaps = 21/147 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
             D  FM  A + +R           V C+IVKD  +I R   +         HAE+  +
Sbjct: 2   EKDIFFMQQAFKEARKA--YDQDEVPVGCVIVKDDKIIARAHNSVEKLKDATAHAEILCI 59

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A ++           Y TLEPC        CA  I    I R+V    D  +   G  
Sbjct: 60  GSAAQDLDNWRLLDTVLYCTLEPCLM------CAGAIQLARIPRIVWAAPDVRLGAGGSW 113

Query: 116 LQWLSQ----KGIIVDRMMESEGKIFL 138
           +   ++      +     + SE    L
Sbjct: 114 VNIFTEEHPFHTVSCTGGVCSEEAEHL 140


>gi|299770395|ref|YP_003732421.1| putative deaminase [Acinetobacter sp. DR1]
 gi|298700483|gb|ADI91048.1| putative deaminase [Acinetobacter sp. DR1]
          Length = 158

 Score = 76.5 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 40/121 (33%), Gaps = 18/121 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA--- 63
           M  A   +            V  ++V    VIG G  A         HAE+QA+  A   
Sbjct: 1   MQLAYEQAELAAQQ--GEIPVGAIVVSQNRVIGSGYNAPISLLDPTAHAEIQAIRAACLS 58

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                    AT YVTLEPC        C   ++   I+ VV    +P         Q L 
Sbjct: 59  LNNYRLPDDATLYVTLEPC------TMCVGALVHARIKHVVFGTTEPKAGSLVSARQLLQ 112

Query: 121 Q 121
            
Sbjct: 113 D 113


>gi|242802981|ref|XP_002484082.1| cytosine deaminase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218717427|gb|EED16848.1| cytosine deaminase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 148

 Score = 76.1 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 59/145 (40%), Gaps = 19/145 (13%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGEEA- 67
           AA+  +R         P  ACL+ KDG ++GRG            H E+ ALE +G    
Sbjct: 9   AAVEEARQGQAEGGV-PIGACLVSKDGKILGRGHNMRFQKGSATLHGEISALENSGRLPA 67

Query: 68  ---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
               GAT Y TL PC        C    I   ++RVVV  ++  +       ++L  +GI
Sbjct: 68  SAYEGATMYTTLSPCDM------CTGACILYKVKRVVVGENNNFLGGE----EYLKSRGI 117

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKR 149
            V  +   E    +  ++  + E  
Sbjct: 118 EVVVLQNEECIKLMTDFIREKPELW 142


>gi|242216212|ref|XP_002473915.1| predicted protein [Postia placenta Mad-698-R]
 gi|220726941|gb|EED80875.1| predicted protein [Postia placenta Mad-698-R]
          Length = 857

 Score = 76.1 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 55/141 (39%), Gaps = 29/141 (20%)

Query: 190 SDAILVGI-----GTVL---ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
            D IL+GI     G+        P LT      + H P  IILD   +LS D K++K   
Sbjct: 2   HDGILIGIALLSEGSAFGLARHLPPLTR----GRYHCPRPIILDSQLRLSPDCKLLKNYR 57

Query: 242 LA----PVIIVTENDDPVLAL---------AFRKKNINII----YCDCRDLKKLLTILVG 284
                 P ++ T  +    A          A R+    I+          L  L+  L  
Sbjct: 58  AGTGRRPWVVCTGYEKKTEAQEKEFNQTKQALRQAGARIVDETGSKGLISLPMLMMSLSS 117

Query: 285 RGVTSLLVEGGAAVAHSFINS 305
            G+ S++VEGGA V  SF+  
Sbjct: 118 MGIRSVMVEGGARVIQSFLAE 138


>gi|190347436|gb|EDK39700.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 150

 Score = 76.1 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 19/155 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQ 58
           ++  D + ++ A+  ++         P    LI +DG V+GRG            H E+ 
Sbjct: 1   MAFDDEKGLAIAIEEAKKG-YEEGGVPIGGALISEDGTVLGRGHNLRFQKDSATLHGEIS 59

Query: 59  ALEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
            LE AG       +  T Y TL PCS       C+   I  G++RVVV  ++  +     
Sbjct: 60  TLENAGRLKGSVYKNCTMYTTLSPCSM------CSGACIMYGVKRVVVGENETFMGAE-- 111

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
              W+ + GI V  +   E K  +  ++  + +  
Sbjct: 112 --DWIRKSGIEVVNLNNQECKDLMAKFIKERPQDW 144


>gi|16330356|ref|NP_441084.1| hypothetical protein sll1631 [Synechocystis sp. PCC 6803]
 gi|1652846|dbj|BAA17764.1| sll1631 [Synechocystis sp. PCC 6803]
          Length = 164

 Score = 76.1 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 52/160 (32%), Gaps = 27/160 (16%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGC----PHAEVQALEE 62
             +M  A+  +    G     P V  ++V   G V+  G            HAE+ A++ 
Sbjct: 9   EDWMQMAIALAEEA-GNVGEIP-VGAVVVNAMGEVLATGQNRKQRDQNPIAHAEMLAIQT 66

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A            T YVTLEPC      P C   II+  +  +V    DP          
Sbjct: 67  ACRRLGHWRLNECTLYVTLEPC------PMCTGAIIQARLGLLVYGTPDPKTGTIDSVFD 120

Query: 118 WLSQK---------GIIVDRMMESEGKIFLHAYLTRQVEK 148
             +           G +       + + +   +  R+ ++
Sbjct: 121 LAASAASNHHLQSLGGVCQEQCREQLQDWFAQHRARKKQQ 160


>gi|315040523|ref|XP_003169639.1| tRNA-specific adenosine deaminase subunit TAD2 [Arthroderma gypseum
           CBS 118893]
 gi|311346329|gb|EFR05532.1| tRNA-specific adenosine deaminase subunit TAD2 [Arthroderma gypseum
           CBS 118893]
          Length = 189

 Score = 76.1 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 60/167 (35%), Gaps = 26/167 (15%)

Query: 1   MPVSSFDARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
           M   S    FM  ALR +     VG T     V C++V    VIG G+        G  H
Sbjct: 4   MSNLSKHEVFMKMALRMAETALAVGET----PVGCVLVNKDKVIGSGMNDTNKSLNGTRH 59

Query: 55  AEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AE  A+EEA              YVT+EPC        CA  + +  +R V     +   
Sbjct: 60  AEFLAIEEALRSHPRSILHETDLYVTVEPCIM------CASALRQYRVRSVYFGCANERF 113

Query: 110 RVSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSH 151
             +G  L   S   I     +   +   E  + L  +  ++ E   +
Sbjct: 114 GGTGGVLSLHSDPAIELPYPVYGGIFRKEAIMLLRKFYVQENENAPN 160


>gi|312219914|emb|CBX99856.1| hypothetical protein [Leptosphaeria maculans]
          Length = 259

 Score = 76.1 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 58/160 (36%), Gaps = 22/160 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
           +    FM  A+  +   +    T   V C+ VKDG +IGRG+        G  HAE  A+
Sbjct: 57  ALHEGFMREAIAMAELALKSDET--PVGCVFVKDGEIIGRGMNETNRTLNGTRHAEFVAI 114

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
                +           YVT+EPC        CA  + + GI+ V     +     +G  
Sbjct: 115 ASILSKHPISILNETDLYVTVEPC------VMCASMLRQYGIKAVYFGCWNERFGGTGGV 168

Query: 116 LQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRS 150
           L       +     +   +   E  + L  +  ++ EK  
Sbjct: 169 LNVHCDPSVDKPYPVTGGIFREEAIMLLRKFYVQENEKAP 208


>gi|310657385|ref|YP_003935106.1| guanine deaminase [Clostridium sticklandii DSM 519]
 gi|308824163|emb|CBH20201.1| guanine deaminase [Clostridium sticklandii]
          Length = 154

 Score = 76.1 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 42/114 (36%), Gaps = 17/114 (14%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
            D  FM  A++ +   +GL +  P    +IVKD  VI RG            HAE+ A+ 
Sbjct: 1   MDE-FMKEAIKEAFEGIGLRAGGP-FGAVIVKDNKVIARGHNKVIETNDPTAHAEIVAIR 58

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           EA +     +      Y T EPC      P C        I  +       D +
Sbjct: 59  EATKLLGRFDLSDCILYTTCEPC------PMCYSAAHWAKIPLIYYGATQDDAK 106


>gi|224368847|ref|YP_002603009.1| putative riboflavin biosynthesis protein ribD [Desulfobacterium
           autotrophicum HRM2]
 gi|223691564|gb|ACN14847.1| putative riboflavin biosynthesis protein ribD [Desulfobacterium
           autotrophicum HRM2]
          Length = 150

 Score = 76.1 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 53/151 (35%), Gaps = 23/151 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALE 61
           D  +M  AL  +     +      V  ++V   G ++ R             HAE+ AL 
Sbjct: 3   DLFYMKIALEEAEKAARMDE--VPVGAVLVDGTGRILARTHNQPITLCDPTAHAEMLALR 60

Query: 62  EAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
             GE+       GAT Y T+EPC        C   II   + R+V    DP    +G   
Sbjct: 61  MGGEKTGNYRLPGATLYSTIEPC------VMCMGAIIHARLSRIVYGACDPKWGAAGSLY 114

Query: 117 Q-----WLSQKGIIVDRMMESEGKIFLHAYL 142
                  L+    IV  + + E    +  + 
Sbjct: 115 NFAFDARLNHTLEIVPGVCKDEATEIIRGFF 145


>gi|319901083|ref|YP_004160811.1| CMP/dCMP deaminase zinc-binding protein [Bacteroides helcogenes P
           36-108]
 gi|319416114|gb|ADV43225.1| CMP/dCMP deaminase zinc-binding protein [Bacteroides helcogenes P
           36-108]
          Length = 159

 Score = 76.1 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 55/146 (37%), Gaps = 17/146 (11%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
            D+ +M  AL  +R   G     P V  ++V    +I R      T      HAE+QA+ 
Sbjct: 17  DDSYYMKQALLEARKA-GERGEVP-VGAVVVCKDRIIARAHNLTETLTDVTAHAEMQAIT 74

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A     G+     T YVT+EPC        CA  I    + ++V    D          
Sbjct: 75  AAASTLGGKYLNECTLYVTVEPC------VMCAGAIAWAQMGKLVFGAVDEKRGYQRYAS 128

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYL 142
           Q L  K I+V  ++  E    +  + 
Sbjct: 129 QALHPKTIVVQGILADECAALMKEFF 154


>gi|325981113|ref|YP_004293515.1| CMP/dCMP deaminase zinc-binding protein [Nitrosomonas sp. AL212]
 gi|325530632|gb|ADZ25353.1| CMP/dCMP deaminase zinc-binding protein [Nitrosomonas sp. AL212]
          Length = 152

 Score = 76.1 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 55/151 (36%), Gaps = 22/151 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEE 66
           M AAL  +            V  ++V+ G+++GRG            HAE+ A+ +AG  
Sbjct: 1   MQAALELALQAQEC--GEVPVGAVVVQHGVIVGRGYNRPISTADPSAHAEIMAMRDAGGH 58

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW--- 118
                      YVTLEPC        C   I    I+R+V    DP     G  L     
Sbjct: 59  MANYRLLDCVLYVTLEPC------VMCIGAIFHARIQRLVYAAADPKTGACGSVLDLPAE 112

Query: 119 --LSQKGIIVDRMMESEGKIFLHAYLTRQVE 147
             L+   ++   +M  E    L  +  ++  
Sbjct: 113 TRLNHHLLVDAGIMAPEAGTLLRQFFAQRRH 143


>gi|107103282|ref|ZP_01367200.1| hypothetical protein PaerPA_01004351 [Pseudomonas aeruginosa PACS2]
          Length = 182

 Score = 76.1 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCS 80
            V  ++V++G +IGRG       +    HAE+ A+  A  EA      G+T YVTLEPCS
Sbjct: 49  PVGAVLVREGEIIGRGFNRPISSHDPSAHAEMLAIRMAAAEAGNYRLPGSTLYVTLEPCS 108

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-----QWLSQKGIIVDRMMESEGK 135
                  C+  ++   I+R+V    +P              + L+ + ++   ++  E  
Sbjct: 109 M------CSGLLVHARIQRLVYGTVEPKSGAVESRGRFFEQEHLNHRVMVEGGVLAEECS 162

Query: 136 IFLHAYL 142
             L A+ 
Sbjct: 163 QVLSAFF 169


>gi|227503496|ref|ZP_03933545.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium
           accolens ATCC 49725]
 gi|227075999|gb|EEI13962.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium
           accolens ATCC 49725]
          Length = 232

 Score = 76.1 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 65/177 (36%), Gaps = 18/177 (10%)

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP----MRI-ILDPHFKLSLDSKIIK 238
             LR  +D + VG  TV ++D       +G+++HSP      I +     K   DSK + 
Sbjct: 48  QALRGWADVVFVGGQTVRSED------YSGVEQHSPDSPPAPIAVPTQSLKFEPDSKFLT 101

Query: 239 TALLAPVIIV-----TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
               AP+ +V        +              +I      ++  L IL  RG   +L E
Sbjct: 102 HFTTAPLFLVPHAALQNPEVSARKGPLEAAGAEVIDAGEGTMQDYLRILRKRGFQRILCE 161

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
           GG  +    ++   +D + L     +    G+  P+   +   +   +  +   +D 
Sbjct: 162 GGPGMLGQLVHIDAIDQMYLTLDPHL--STGVEKPVATFHGTHSHRRMHLENIAADT 216


>gi|197294746|ref|YP_001799287.1| Cytidine/deoxycytidylate deaminase family protein [Candidatus
           Phytoplasma australiense]
 gi|171854073|emb|CAM12046.1| Cytidine/deoxycytidylate deaminase family protein [Candidatus
           Phytoplasma australiense]
          Length = 166

 Score = 76.1 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 55/158 (34%), Gaps = 25/158 (15%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY------GGCPH 54
           M  +  +  FM AA + +            V  ++V +  +I R            G  H
Sbjct: 1   MTQNDKNLFFMKAAFQEAYKAYL--KKEVPVGAVVVLNNQIIARAHNNRKQKNLFFG--H 56

Query: 55  AEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AE  AL +A ++ +      ++ YVTLEPC        CA  +I+ G++ V     D   
Sbjct: 57  AEFLALIKANKKLKNRRLTNSSVYVTLEPCLM------CAGALIQAGVKHVYYGAADSKT 110

Query: 110 RVSGRGLQW----LSQKGIIVDRMMESEGKIFLHAYLT 143
                 L      L  K I     +  E    L  +  
Sbjct: 111 GCIKSLLTSFELPLPHKVIAHSGFLAQESSDLLKTFFQ 148


>gi|167755137|ref|ZP_02427264.1| hypothetical protein CLORAM_00641 [Clostridium ramosum DSM 1402]
 gi|167705187|gb|EDS19766.1| hypothetical protein CLORAM_00641 [Clostridium ramosum DSM 1402]
          Length = 177

 Score = 76.1 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/114 (32%), Positives = 47/114 (41%), Gaps = 17/114 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEV 57
            V   D  FM  A + +     L      V  +IVKDG +I  G     T+     HAE+
Sbjct: 24  KVMDQDLEFMEIAYQEALKC--LDMDEVPVGAVIVKDGKIIACGRNLRETSKRATAHAEI 81

Query: 58  QALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
            A+EEA            T YVTLEPC        C+  II   I+RVV    +
Sbjct: 82  IAIEEACRTLNSWYLDECTLYVTLEPC------VMCSGAIINSRIQRVVFGAFE 129


>gi|118580396|ref|YP_901646.1| cytosine deaminase [Pelobacter propionicus DSM 2379]
 gi|118503106|gb|ABK99588.1| Cytosine deaminase [Pelobacter propionicus DSM 2379]
          Length = 145

 Score = 76.1 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 64/149 (42%), Gaps = 20/149 (13%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQALEEAG 64
            FM AAL  +R   GL      +  L+V  G V+GRG       G    HAE+ ALE AG
Sbjct: 3   EFMQAALEEARK--GLAEGGIPIGSLVVHRGAVLGRGHNRRVQKGSVILHAEMDALENAG 60

Query: 65  EEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                  R +  Y TL PC      P CA  I+  GI RVV+  +    R      + L 
Sbjct: 61  RMPAAIYRESVLYTTLSPC------PMCAGAILLYGIPRVVIGEN----RNFRGEEELLR 110

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            +G+ V+ + + E    +  ++  + +  
Sbjct: 111 SRGVQVELLQDEECIALMRQFIDNRPDLW 139


>gi|282852744|ref|ZP_06262086.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus gasseri 224-1]
 gi|282556486|gb|EFB62106.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus gasseri 224-1]
          Length = 150

 Score = 76.1 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 50/147 (34%), Gaps = 23/147 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           M  A   ++           +  ++V KDG VIG G            HAE+ A+ +A +
Sbjct: 1   MQLAFAQAKKAE--DQGEVPIGAIVVDKDGNVIGEGYNRRELDEDATQHAEMIAIRQACQ 58

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                     + ++TLEPC      P C+  II   +  V     DP    +G  +    
Sbjct: 59  NLGSWRLVDCSLFITLEPC------PMCSGAIINSRLAEVYYGAFDPKAGAAGSVIDLFK 112

Query: 121 -----QKGIIVDRMMESEGKIFLHAYL 142
                    +   + + +    L  + 
Sbjct: 113 VEKFNHHPKVFGGLFKDQAAQMLKDFF 139


>gi|189204912|ref|XP_001938791.1| tRNA-specific adenosine deaminase subunit TAD2 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187985890|gb|EDU51378.1| tRNA-specific adenosine deaminase subunit TAD2 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 234

 Score = 76.1 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 26/162 (16%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
           ++   FM  A+  +   +    T   V C+ VKDG +IGRG+        G  HAE  A+
Sbjct: 7   AYHEGFMREAIAMAELALKSDET--PVGCVFVKDGEIIGRGMNETNRTLNGTRHAEFVAI 64

Query: 61  EEAGEEARG-------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
             AG  ++           YVT+EPC        CA  + + GIR V     +     +G
Sbjct: 65  --AGILSKHPISILNETDLYVTVEPC------VMCASMLRQYGIRAVYFGCWNERFGGTG 116

Query: 114 RGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRS 150
             L   S   +     +   +   E  + L  +  ++ EK  
Sbjct: 117 GVLNIHSDPSVDKPYPVTGGIFREEAIMLLRKFYVQENEKAP 158


>gi|113969580|ref|YP_733373.1| CMP/dCMP deaminase, zinc-binding [Shewanella sp. MR-4]
 gi|113884264|gb|ABI38316.1| CMP/dCMP deaminase, zinc-binding [Shewanella sp. MR-4]
          Length = 252

 Score = 76.1 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 55/152 (36%), Gaps = 22/152 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
           D  +M   +  +       +    V  ++VK+G  I  G       +  C HAE+Q L  
Sbjct: 89  DEHWMR--VAMAMAEKAEAAGEVPVGAVLVKEGQQIATGYNLSISEHDPCAHAEIQCLRA 146

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AG+          T YVTLEPC+       CA  ++   I RVV    D     +G  L 
Sbjct: 147 AGQTIENYRLLDTTLYVTLEPCAM------CAGAMVHSRIARVVFGAKDEKTGAAGTVLN 200

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTR 144
            L          I   ++  +    L  +  R
Sbjct: 201 LLQHPAFNHQVEITSGVLAQDCADQLSRFFKR 232


>gi|15613897|ref|NP_242200.1| late competence operon required for DNA binding and uptake
           [Bacillus halodurans C-125]
 gi|10173950|dbj|BAB05053.1| late competence operon required for DNA binding and uptake
           [Bacillus halodurans C-125]
          Length = 188

 Score = 76.1 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 60/162 (37%), Gaps = 34/162 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------ 53
           M   S+D  FM+ +   +      T T   V   IV+D  +I  G      G P      
Sbjct: 1   MNRISWDQYFMAQSHLLALRS---TCTRLMVGATIVRDKRIIAGGYNGSISGGPHCIDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAEV AL +    G    GA  YVT  PC +      C + II+ GI+
Sbjct: 58  CYVVEGHCIRTIHAEVNALLQCAKFGVPTEGAEIYVTHFPCVN------CTKAIIQSGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
           +V    D  +   +    +     G+ V+++   E  +  H 
Sbjct: 112 KVYYATDYKNSPYAE---ELFRDAGVDVEQVELEEMILDRHN 150


>gi|15598962|ref|NP_252456.1| hypothetical protein PA3767 [Pseudomonas aeruginosa PAO1]
 gi|116051766|ref|YP_789395.1| hypothetical protein PA14_15680 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218889954|ref|YP_002438818.1| putative Cytosine/adenosine deaminase [Pseudomonas aeruginosa
           LESB58]
 gi|254236673|ref|ZP_04929996.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254242457|ref|ZP_04935779.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|296387724|ref|ZP_06877199.1| putative Cytosine/adenosine deaminase [Pseudomonas aeruginosa PAb1]
 gi|313109181|ref|ZP_07795150.1| putative Cytosine/adenosine deaminase [Pseudomonas aeruginosa
           39016]
 gi|9949937|gb|AAG07154.1|AE004795_6 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|115586987|gb|ABJ13002.1| putative Cytosine/adenosine deaminase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126168604|gb|EAZ54115.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126195835|gb|EAZ59898.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218770177|emb|CAW25939.1| putative Cytosine/adenosine deaminase [Pseudomonas aeruginosa
           LESB58]
 gi|310881652|gb|EFQ40246.1| putative Cytosine/adenosine deaminase [Pseudomonas aeruginosa
           39016]
          Length = 182

 Score = 76.1 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCS 80
            V  ++V++G +IGRG       +    HAE+ A+  A  EA      G+T YVTLEPCS
Sbjct: 49  PVGAVLVREGEIIGRGFNRPISSHDPSAHAEMLAIRMAAAEAGNYRLPGSTLYVTLEPCS 108

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-----QWLSQKGIIVDRMMESEGK 135
                  C+  ++   I+R+V    +P              + L+ + ++   ++  E  
Sbjct: 109 M------CSGLLVHARIQRLVYGTVEPKSGAVESRGRFFEQEHLNHRVMVEGGVLAEECS 162

Query: 136 IFLHAYL 142
             L A+ 
Sbjct: 163 QALSAFF 169


>gi|76789589|ref|YP_328675.1| tRNA-specific adenosine deaminase [Chlamydia trachomatis A/HAR-13]
 gi|237803276|ref|YP_002888470.1| Cytosine deaminase [Chlamydia trachomatis B/Jali20/OT]
 gi|237805197|ref|YP_002889351.1| Cytosine deaminase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|76168119|gb|AAX51127.1| tRNA-specific adenosine deaminase [Chlamydia trachomatis A/HAR-13]
 gi|231273497|emb|CAX10413.1| Cytosine deaminase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274510|emb|CAX11306.1| Cytosine deaminase [Chlamydia trachomatis B/Jali20/OT]
          Length = 163

 Score = 76.1 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 42/124 (33%), Gaps = 17/124 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
             D  FM  AL  +R           V C+IV    +I RG  +         HAE+  +
Sbjct: 4   EKDLFFMKKALDEARKA--YEQDEVPVGCIIVHGDKIIARGHNSVEQLKDSTAHAEMICI 61

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A E       +    Y TLEPC        CA  I    I R+V    D  +   G  
Sbjct: 62  SAAAEYLENWRLKDTILYCTLEPCLM------CAGAIQLARIPRIVWGAPDLRLGAGGSW 115

Query: 116 LQWL 119
           L   
Sbjct: 116 LNVF 119


>gi|152989527|ref|YP_001346733.1| hypothetical protein PSPA7_1349 [Pseudomonas aeruginosa PA7]
 gi|150964685|gb|ABR86710.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 182

 Score = 76.1 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCS 80
            V  ++V++G +IGRG       +    HAE+ A+  A  EA      G+T YVTLEPC 
Sbjct: 49  PVGAVLVREGEIIGRGFNQPISSHDPSAHAEMVAIRMAAAEAGNYRLPGSTLYVTLEPCG 108

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-----QWLSQKGIIVDRMMESEGK 135
                  C+  ++   I+R+V    +P              + L+ + ++   ++  E  
Sbjct: 109 M------CSGLLVHARIQRLVYGTLEPKSGAVESRGRFFEQEHLNHRVMVEGGVLAEECS 162

Query: 136 IFLHAYL 142
             L A+ 
Sbjct: 163 QALSAFF 169


>gi|72161281|ref|YP_288938.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermobifida
           fusca YX]
 gi|71915013|gb|AAZ54915.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermobifida
           fusca YX]
          Length = 153

 Score = 76.1 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 46/134 (34%), Positives = 62/134 (46%), Gaps = 7/134 (5%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG-GCPHAEVQALE 61
           +  D R +  A+  SR     +ST  SV  LIV  DG V+  G +       HAE  AL 
Sbjct: 5   TERDLRLLRTAVDLSR-SCPPSSTAFSVGALIVAADGTVLADGYSRRDDPHDHAEEVALR 63

Query: 62  E-AGEEAR--GATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
             A E+ R   AT Y +LEPCS     P  C   I++  I R+V    +P++ V  RG +
Sbjct: 64  AVAAEDPRLAAATLYSSLEPCSTRASRPRSCTSLILDTPIPRIVFAWREPELFVDCRGAE 123

Query: 118 WLSQKGIIVDRMME 131
            L   G  V  + E
Sbjct: 124 LLRAAGREVVEVPE 137


>gi|304439146|ref|ZP_07399064.1| tRNA-specific adenosine deaminase [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304372278|gb|EFM25866.1| tRNA-specific adenosine deaminase [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 147

 Score = 76.1 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE- 65
           M  AL  ++         P V  ++V  G V+G G            HAE++AL+ A + 
Sbjct: 1   MKFALHLAKKS-YRRGEIP-VGAVVVLHGKVVGYGYNLKETLNDATEHAELRALKMAAKT 58

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                  G   Y TLEPC+       CA  +I   I ++++    P +  +G  L  L +
Sbjct: 59  LGTYHLEGTKMYTTLEPCAM------CAGAMILFRIDKLIIGAKSPRMGAAGSNLNILDR 112

Query: 122 KGI-----IVDRMMESEGKIFLHAYL 142
           +G      +   +   E    +  + 
Sbjct: 113 EGFNHKVKVEYSIYGDECSKLISKFF 138


>gi|49081784|gb|AAT50292.1| PA3767 [synthetic construct]
          Length = 183

 Score = 75.7 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCS 80
            V  ++V++G +IGRG       +    HAE+ A+  A  EA      G+T YVTLEPCS
Sbjct: 49  PVGAVLVREGEIIGRGFNRPISSHDPSAHAEMLAIRMAAAEAGNYRLPGSTLYVTLEPCS 108

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-----QWLSQKGIIVDRMMESEGK 135
                  C+  ++   I+R+V    +P              + L+ + ++   ++  E  
Sbjct: 109 M------CSGLLVHARIQRLVYGTVEPKSGAVESRGRFFEQEHLNHRVMVEGGVLAEECS 162

Query: 136 IFLHAYL 142
             L A+ 
Sbjct: 163 QALSAFF 169


>gi|327292493|ref|XP_003230945.1| tRNA-specific adenosine deaminase subunit TAD2 [Trichophyton rubrum
           CBS 118892]
 gi|326466882|gb|EGD92335.1| tRNA-specific adenosine deaminase subunit TAD2 [Trichophyton rubrum
           CBS 118892]
          Length = 189

 Score = 75.7 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 59/160 (36%), Gaps = 26/160 (16%)

Query: 8   ARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
             FM  AL+ +     VG T     V C++V    VIG G+        G  HAE  A+E
Sbjct: 11  EVFMKMALKMAETALAVGET----PVGCVLVNKDRVIGSGMNDTNKSLNGTRHAEFLAIE 66

Query: 62  EAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           EA         R    YVT+EPC        CA  + +  IR V     +     +G  L
Sbjct: 67  EALRSHPRSIFRETDLYVTVEPCIM------CASALRQYQIRSVYFGCANERFGGTGGVL 120

Query: 117 QWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSH 151
              S   I     +   +   E  + L  +  ++ E   +
Sbjct: 121 TLHSDPAIDQPYPVYGGIYRKEAIMLLRKFYVQENENAPN 160


>gi|83588899|ref|YP_428908.1| tRNA-adenosine deaminase [Moorella thermoacetica ATCC 39073]
 gi|83571813|gb|ABC18365.1| tRNA-adenosine deaminase [Moorella thermoacetica ATCC 39073]
          Length = 150

 Score = 75.7 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 54/151 (35%), Gaps = 22/151 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             +M  AL  +R           +  +IV  G +I R             HAE+ AL  A
Sbjct: 4   HFYMGEALDEARKA--FDLGEVPIGAVIVAGGEIIARAGNRRETLADPTAHAEIIALRAA 61

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                     GAT YVTLEPC      P CA  +++  IR++V    D         +  
Sbjct: 62  ARVRGDWRLTGATLYVTLEPC------PMCAGALVQARIRQLVYGAPDLRSGAVDSVVNL 115

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTR 144
           +       +  ++  + E E +  +  +   
Sbjct: 116 VENPHFDHQVEVIPGIREEECRELIKKFFQM 146


>gi|225010991|ref|ZP_03701457.1| CMP/dCMP deaminase zinc-binding [Flavobacteria bacterium MS024-3C]
 gi|225004898|gb|EEG42854.1| CMP/dCMP deaminase zinc-binding [Flavobacteria bacterium MS024-3C]
          Length = 146

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 38/157 (24%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
               +D  ++  A   + W          V  ++VKD ++I  G     G P        
Sbjct: 6   KQEKYDQAYLRMA---AEWGKLSYCKRKQVGAIVVKDRMIISDGY---NGTPSGFENFCE 59

Query: 54  -----------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                      HAE  AL     + + + GAT Y+TL PC        C++ I + GI+R
Sbjct: 60  DETGYTKWYVLHAEANALSKVAASTQSSEGATLYITLSPCKE------CSKLIHQSGIKR 113

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI 136
           VV      D      G+ +L++ G+ +  M   E   
Sbjct: 114 VVYAKAYRD----SSGIDFLAKAGVAISHMPIEENHK 146


>gi|306836256|ref|ZP_07469238.1| conserved hypothetical protein [Corynebacterium accolens ATCC
           49726]
 gi|304567848|gb|EFM43431.1| conserved hypothetical protein [Corynebacterium accolens ATCC
           49726]
          Length = 232

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 66/177 (37%), Gaps = 18/177 (10%)

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP----MRI-ILDPHFKLSLDSKIIK 238
             LR  +D + VG  TV ++D       +G+++HSP      I +     K    SK + 
Sbjct: 48  QTLRGWADVVFVGGQTVRSED------YSGVEQHSPDSRPAPIAVPTQSLKFDPSSKFLT 101

Query: 239 TALLAPVIIV-----TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
               AP+ +V      + D      +       +I      ++  L +L  RG   +L E
Sbjct: 102 DFTTAPLFLVPHAALQQADVAARVPSIEATGAEVIDAGEGTMQDYLRVLRERGFQRILCE 161

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
           GG  +    ++   +D + L     +    G+  P+   +   +   +  +   +D 
Sbjct: 162 GGPGMLGQLVHIDAIDQMYLTLDPHL--STGVEKPVATFHGTHSHRRMHLENIAADT 216


>gi|166154188|ref|YP_001654306.1| cytosine deaminase [Chlamydia trachomatis 434/Bu]
 gi|166155063|ref|YP_001653318.1| cytosine deaminase [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|255311685|ref|ZP_05354255.1| cytosine deaminase [Chlamydia trachomatis 6276]
 gi|255317986|ref|ZP_05359232.1| cytosine deaminase [Chlamydia trachomatis 6276s]
 gi|255349249|ref|ZP_05381256.1| cytosine deaminase [Chlamydia trachomatis 70]
 gi|255503786|ref|ZP_05382176.1| cytosine deaminase [Chlamydia trachomatis 70s]
 gi|255507467|ref|ZP_05383106.1| cytosine deaminase [Chlamydia trachomatis D(s)2923]
 gi|301335433|ref|ZP_07223677.1| cytosine deaminase [Chlamydia trachomatis L2tet1]
 gi|165930176|emb|CAP03660.1| Cytosine deaminase [Chlamydia trachomatis 434/Bu]
 gi|165931051|emb|CAP06614.1| Cytosine deaminase [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|289525890|emb|CBJ15372.1| Cytosine deaminase [Chlamydia trachomatis Sweden2]
 gi|296435476|gb|ADH17654.1| cytosine deaminase [Chlamydia trachomatis E/150]
 gi|296437331|gb|ADH19501.1| cytosine deaminase [Chlamydia trachomatis G/11222]
 gi|296439193|gb|ADH21346.1| cytosine deaminase [Chlamydia trachomatis E/11023]
          Length = 163

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 42/124 (33%), Gaps = 17/124 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
             D  FM  AL  +R           V C+IV    +I RG  +         HAE+  +
Sbjct: 4   EKDLFFMKKALDEARKA--YEQDEVPVGCIIVHGDKIIARGHNSVEQLKDPTAHAEMICI 61

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A E       +    Y TLEPC        CA  I    I R+V    D  +   G  
Sbjct: 62  SAAAEYLENWRLKDTILYCTLEPCLM------CAGAIQLARIPRIVWGAPDLRLGAGGSW 115

Query: 116 LQWL 119
           L   
Sbjct: 116 LNVF 119


>gi|297203110|ref|ZP_06920507.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sviceus ATCC 29083]
 gi|297148300|gb|EDY61485.2| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sviceus ATCC 29083]
          Length = 268

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 12/180 (6%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD------- 203
            +   +  + D         S PI+          LRA +D ++ G  TV  +       
Sbjct: 51  WLRANMVSTLDG-AAQHDGRSHPISTATDMRIFGTLRALADVVIAGAETVRQEGYRPARV 109

Query: 204 -DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
            D     R    Q   P   ++     L     +  + L+  +I+      P    A  K
Sbjct: 110 RDEFAELREAAGQGPVPAIAVITASLDLDFSLPLYTSPLVPTLILTGAAAAPDRVAAAEK 169

Query: 263 KNINIIYCD---CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
               ++        D  + +  L   G T LL EGG  +    + + ++D + L  S ++
Sbjct: 170 AGARVVIAGDGVGVDPARAVRALAQLGHTRLLTEGGPRLLGQLVAAGVLDELCLTLSPML 229


>gi|169351621|ref|ZP_02868559.1| hypothetical protein CLOSPI_02401 [Clostridium spiroforme DSM 1552]
 gi|169291843|gb|EDS73976.1| hypothetical protein CLOSPI_02401 [Clostridium spiroforme DSM 1552]
          Length = 148

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 17/112 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQAL 60
           + D +FM  A + +     L      V  +IVK+  VI               HAE+ A+
Sbjct: 2   NQDIKFMEIAYQEALKC--LEKDEVPVGAVIVKNNEVISCAHNLRETTNLATAHAEILAI 59

Query: 61  EEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
            EA ++         T YVTLEPC        C+  II   I++VV    + 
Sbjct: 60  NEACKKLESWYLDECTLYVTLEPC------VMCSGAIINSRIKKVVFGAFEN 105


>gi|198275609|ref|ZP_03208140.1| hypothetical protein BACPLE_01778 [Bacteroides plebeius DSM 17135]
 gi|198271238|gb|EDY95508.1| hypothetical protein BACPLE_01778 [Bacteroides plebeius DSM 17135]
          Length = 144

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 54/147 (36%), Gaps = 32/147 (21%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC------------- 52
            D R+M  AL ++            V  LIVKD ++I  G                    
Sbjct: 11  LDKRYMRMALIWAENSYCQRR---QVGALIVKDKMIISDGYNGTPAGFENVCEDENGVTR 67

Query: 53  ---PHAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               HAE  A   +  +   + GAT YVT  PC        CA+ II+ GI+RVV     
Sbjct: 68  PYVLHAEANAITKIARSSNSSEGATMYVTASPCIE------CAKLIIQAGIKRVVYAEKY 121

Query: 107 PDVRVSGRGLQWLSQKGIIVDRMMESE 133
                   GL  L +  I +  +  +E
Sbjct: 122 RL----EDGLDLLKRANIEIVYLNPNE 144


>gi|15605579|ref|NP_220365.1| cytosine deaminase [Chlamydia trachomatis D/UW-3/CX]
 gi|3329316|gb|AAC68441.1| cytosine deaminase [Chlamydia trachomatis D/UW-3/CX]
 gi|297748972|gb|ADI51518.1| tRNA-specific adenosine deaminase [Chlamydia trachomatis D-EC]
 gi|297749852|gb|ADI52530.1| tRNA-specific adenosine deaminase [Chlamydia trachomatis D-LC]
          Length = 163

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 42/124 (33%), Gaps = 17/124 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
             D  FM  AL  +R           V C+IV    +I RG  +         HAE+  +
Sbjct: 4   EKDLFFMKKALDEARKA--YEQDEVPVGCIIVHGDKIIARGHNSVEQLKDPTVHAEMICI 61

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A E       +    Y TLEPC        CA  I    I R+V    D  +   G  
Sbjct: 62  SAAAEYLENWRLKDTILYCTLEPCLM------CAGAIQLARIPRIVWGAPDLRLGAGGSW 115

Query: 116 LQWL 119
           L   
Sbjct: 116 LNVF 119


>gi|225847988|ref|YP_002728151.1| tRNA-specific adenosine deaminase [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643800|gb|ACN98850.1| tRNA-specific adenosine deaminase [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 157

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 17/115 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
           +   + +F+  A++ +     L      V  ++VKD  V+ +G            HAE+ 
Sbjct: 1   MKEINTKFIELAIKEAEKA--LKKGEVPVGAVLVKDDKVVSKGYNLRISKKNALYHAEIV 58

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           A+E A ++ +         Y TLEPC        CA  I++  I++VV    D  
Sbjct: 59  AIERACKKLKSWRLDDTVLYTTLEPCLM------CAGAIMQARIKKVVFLAKDEK 107


>gi|291279752|ref|YP_003496587.1| CMP/dCMP deaminase zinc-binding protein [Deferribacter
           desulfuricans SSM1]
 gi|290754454|dbj|BAI80831.1| CMP/dCMP deaminase, zinc-binding protein [Deferribacter
           desulfuricans SSM1]
          Length = 151

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 43/115 (37%), Gaps = 17/115 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
            S  D  FM  A+  +            V  ++V+D  VI  G            HAE+ 
Sbjct: 2   FSDVDKYFMKLAIAEAYKS--FEEGEVPVGAVVVRDDEVISYGRNIKGKNKNALLHAEMV 59

Query: 59  ALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           A+ ++            T YVT EPC        CA  I+ C I++V+    +P 
Sbjct: 60  AIHKSVKMLDDWRLNECTLYVTCEPC------VMCAGAILHCRIKKVIFGAFEPK 108


>gi|299143513|ref|ZP_07036593.1| cytidine/deoxycytidylate deaminase family protein [Peptoniphilus
           sp. oral taxon 386 str. F0131]
 gi|298517998|gb|EFI41737.1| cytidine/deoxycytidylate deaminase family protein [Peptoniphilus
           sp. oral taxon 386 str. F0131]
          Length = 153

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 21/123 (17%)

Query: 9   RFMSAALRFSRWHVGLTSTN--PSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
            FM+ AL+ ++    ++  N    +  +IV +  +IGRG            HAE+ A++E
Sbjct: 6   FFMNEALKLAK----ISYDNGDIPIGAIIVFNDEIIGRGFNKKELLKDASAHAELIAMKE 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +          T YVTLEPC+       CA  I+   ++++ +   +      G  + 
Sbjct: 62  ASKFLNSYHLEDCTMYVTLEPCAM------CAGAILNFRLKKIYIGAKNERFGCCGSKIN 115

Query: 118 WLS 120
            L+
Sbjct: 116 LLN 118


>gi|293379949|ref|ZP_06626050.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus crispatus 214-1]
 gi|290923462|gb|EFE00364.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus crispatus 214-1]
          Length = 156

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 52/147 (35%), Gaps = 23/147 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           M  A+  ++           +  ++V  DG V+G G            HAE+ A++EA  
Sbjct: 1   MQLAIDQAKEAEKQ--GEVPIGAVVVDPDGRVVGTGYNRRELDEDATQHAEMIAIKEACS 58

Query: 66  EAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR-----G 115
           +         + +VTLEPC      P CA  II   I+ V     DP     G       
Sbjct: 59  KLGMWRLIDCSLFVTLEPC------PMCAGAIINSRIKDVYFGALDPKAGACGSVVDLFS 112

Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYL 142
           ++  +     +  +   +    L  + 
Sbjct: 113 VEKFNHHPHAIRGLYRDQCAQMLKDFF 139


>gi|209527530|ref|ZP_03276032.1| CMP/dCMP deaminase zinc-binding [Arthrospira maxima CS-328]
 gi|209492018|gb|EDZ92371.1| CMP/dCMP deaminase zinc-binding [Arthrospira maxima CS-328]
          Length = 157

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 46/120 (38%), Gaps = 18/120 (15%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA 63
            +M  AL+      G     P V  +IV + G +I +G            HAE+ AL +A
Sbjct: 10  HWMRQALKLGA-AAGEAGEVP-VGAVIVNQQGKLIAQGENRRERDRDPTAHAEIIALRQA 67

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            +          T YVTLEPC      P CA  II+  I  +V   DDP           
Sbjct: 68  SQVLGDWHLDTCTLYVTLEPC------PMCAGAIIQARIGLLVYGADDPKTGSIRTVFNL 121


>gi|282856020|ref|ZP_06265309.1| ComE operon protein 2 [Pyramidobacter piscolens W5455]
 gi|282586139|gb|EFB91418.1| ComE operon protein 2 [Pyramidobacter piscolens W5455]
          Length = 180

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 54/158 (34%), Gaps = 43/158 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
            +++ FM+ AL  +     L      V  +IV+DG +I  G                   
Sbjct: 7   DWESYFMTLALVAATRSTCLRR---QVGAVIVRDGQIISTGYNGAPKGTPHCFETGCLRT 63

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE+ A+ +A   G    GA+ Y T  PCS       C + II 
Sbjct: 64  KLGIPSGERHEICRGSHAEMNAIAQAASVGVSTAGASLYCTHSPCSF------CTKAIIN 117

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
            GIRRVV     PD            + G++ +     
Sbjct: 118 AGIRRVVYLYSYPDELAE----NLRREAGLVAEHFPPE 151


>gi|332185432|ref|ZP_08387180.1| cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Sphingomonas sp. S17]
 gi|332014410|gb|EGI56467.1| cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Sphingomonas sp. S17]
          Length = 164

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 49/115 (42%), Gaps = 16/115 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQAL 60
           + D R+M  AL+ +R      ST+P   C+IV+ G V+     +         HAE+ A+
Sbjct: 4   ATDERWMRLALQVARSKGSDPSTSPL-GCVIVRGGQVLAAERNQTHELPDATAHAEMMAI 62

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
             A E     E R AT Y TL+PC        C    I   + RVV      DV 
Sbjct: 63  RRACESVGDLELRDATLYSTLQPCGM------CTMASIWSKVGRVVYGAGREDVH 111


>gi|297170608|gb|ADI21634.1| cytosine/adenosine deaminases [uncultured myxobacterium
           HF0130_06F04]
          Length = 159

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 17/124 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  +M AA   +     L      V  L++ +  V+GRG     T +    HAE+ A+ E
Sbjct: 4   DESWMQAAFAEAEKARAL--GEVPVGALVIYEDRVVGRGFNRRETDHDPLAHAEILAIGE 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +        G   YVTLEPC      P CA  I+   + R+V    DP    +G    
Sbjct: 62  AAKTLGRWRLSGCELYVTLEPC------PMCAGAIVNSRLDRLVFGATDPRAGAAGTVFD 115

Query: 118 WLSQ 121
            +  
Sbjct: 116 IVRD 119


>gi|225681358|gb|EEH19642.1| tRNA-specific adenosine deaminase subunit TAD2 [Paracoccidioides
           brasiliensis Pb03]
          Length = 197

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 56/158 (35%), Gaps = 22/158 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL      +    T   V C++V +  +IG G+        G  HAE  A+EE 
Sbjct: 18  EYFMRKALDMGEEALASGET--PVGCVLVHNEEIIGSGMNDTNKSMNGTRHAEFLAVEEV 75

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                         YVT+EPC        CA  + +  IR V     +     +G  L  
Sbjct: 76  LRSHPRSIFHETDLYVTVEPCIM------CASALRQYRIRHVYFGCANERFGGTGGVLNL 129

Query: 119 LSQKGII-----VDRMMESEGKIFLHAYLTRQVEKRSH 151
            S  GI         +   E  + L  +  ++ E+  +
Sbjct: 130 HSDPGIDPPYELTGGLFRKEAIMLLRRFYIQENERAPN 167


>gi|295671881|ref|XP_002796487.1| tRNA-specific adenosine deaminase [Paracoccidioides brasiliensis
           Pb01]
 gi|226283467|gb|EEH39033.1| tRNA-specific adenosine deaminase [Paracoccidioides brasiliensis
           Pb01]
          Length = 197

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 56/158 (35%), Gaps = 22/158 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL      +    T   V C++V +  +IG G+        G  HAE  A+EE 
Sbjct: 18  EYFMRKALDMGEEALASGET--PVGCVLVHNEEIIGSGMNDTNKSMNGTRHAEFLAVEEV 75

Query: 64  GEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                         YVT+EPC        CA  + +  IR V     +     +G  L  
Sbjct: 76  LRSYPRSIFHETDLYVTVEPCIM------CASALRQYRIRHVFFGCANERFGGTGGVLNL 129

Query: 119 LSQKGII-----VDRMMESEGKIFLHAYLTRQVEKRSH 151
            S  GI         +   E  + L  +  ++ E+  +
Sbjct: 130 HSDPGIDPPYELTGGLFRKEAIMLLRRFYIQENERAPN 167


>gi|237733437|ref|ZP_04563918.1| tRNA-adenosine deaminase [Mollicutes bacterium D7]
 gi|229383472|gb|EEO33563.1| tRNA-adenosine deaminase [Coprobacillus sp. D7]
          Length = 152

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/111 (32%), Positives = 46/111 (41%), Gaps = 17/111 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
             D  FM  A + +     L      V  +IVKDG +I  G     T+     HAE+ A+
Sbjct: 2   DQDLEFMEIAYQEALKC--LDMDEVPVGAVIVKDGKIIACGRNLRETSKRATAHAEIIAI 59

Query: 61  EEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           EEA            T YVTLEPC        C+  II   I+RVV    +
Sbjct: 60  EEACRTLNSWYLDECTLYVTLEPC------VMCSGAIINSRIQRVVFGAFE 104


>gi|166368572|ref|YP_001660845.1| cytidine and deoxycytidylate deaminase [Microcystis aeruginosa
           NIES-843]
 gi|166090945|dbj|BAG05653.1| cytidine and deoxycytidylate deaminase [Microcystis aeruginosa
           NIES-843]
          Length = 162

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 46/122 (37%), Gaps = 22/122 (18%)

Query: 8   ARFMSAALRFSRWH--VGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAEVQAL 60
            ++M  AL  +      G       V  +IV K G +I +G       +    HAE+ A+
Sbjct: 17  RQWMQLALNLAATAGDRGDV----PVGAVIVDKQGHLIAQGANCKEKHHDPTAHAEILAI 72

Query: 61  EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A            T YVTLEPC      P CA  II+  +  +V   DDP   V    
Sbjct: 73  RAASQVLGNWHLNDCTLYVTLEPC------PMCAGAIIQARLGLLVYGADDPKTGVIRTV 126

Query: 116 LQ 117
             
Sbjct: 127 AN 128


>gi|145641906|ref|ZP_01797480.1| preprotein translocase subunit SecA [Haemophilus influenzae R3021]
 gi|145273385|gb|EDK13257.1| preprotein translocase subunit SecA [Haemophilus influenzae
           22.4-21]
          Length = 147

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 51/149 (34%), Gaps = 23/149 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHAEVQALEEAGE 65
           M  AL  +     L      V  ++V D G +IG G            HAE+ AL    +
Sbjct: 1   MRYALTLADKAEAL--GEIPVGAVLVDDSGNIIGEGWNLSIVQNDPTAHAEIIALRNGAK 58

Query: 66  EARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ--- 117
             +       T YVTLEPC        CA  I+   I+R+V    D      G       
Sbjct: 59  NIQNYRLLNTTLYVTLEPC------TMCAGAILHSRIKRLVFGTSDYKTGAIGSRFHFFD 112

Query: 118 --WLSQKGIIVDRMMESEGKIFLHAYLTR 144
              ++    I   ++  E    L  +  +
Sbjct: 113 DYKMNHTLEITSGVLAEECSQKLSTFFQK 141


>gi|212540050|ref|XP_002150180.1| cytosine deaminase, putative [Penicillium marneffei ATCC 18224]
 gi|210067479|gb|EEA21571.1| cytosine deaminase, putative [Penicillium marneffei ATCC 18224]
          Length = 148

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/145 (27%), Positives = 58/145 (40%), Gaps = 19/145 (13%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGEEA- 67
           AA+  +R         P  ACL+ KDG ++GRG            H E+ ALE +G    
Sbjct: 9   AAVEEARQGQAEGGV-PIGACLVSKDGKILGRGHNMRFQKGSATLHGEISALENSGRLPA 67

Query: 68  ---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
               GAT Y TL PC        C    I   ++RVVV  +   +       Q+L  +GI
Sbjct: 68  SAYEGATMYTTLSPCDM------CTGACILYKVKRVVVGENKTFLGGE----QYLQSRGI 117

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKR 149
            V  +   E    +  ++  + E  
Sbjct: 118 EVVVLQNEECIKLMTDFIREKPELW 142


>gi|108758559|ref|YP_630178.1| cytidine and deoxycytidylate deaminase zinc-binding
           domain-containing protein [Myxococcus xanthus DK 1622]
 gi|108462439|gb|ABF87624.1| cytidine and deoxycytidylate deaminase zinc-binding domain protein
           [Myxococcus xanthus DK 1622]
          Length = 154

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 17/124 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
           D  FM  AL  +R    L      V  + V +G V+G G            HAE+ A++ 
Sbjct: 3   DEAFMQQALSLAREAAEL--GEVPVGAVAVLNGEVVGAGFNRREVDRNPLAHAEMLAMDA 60

Query: 63  AGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A  +       G T YVTLEPC+       CA  +++  + R+V    DP     G    
Sbjct: 61  AARKIGAWRLSGVTLYVTLEPCAM------CAGGLVQSRVTRLVFGAFDPKAGAVGSLYN 114

Query: 118 WLSQ 121
            + +
Sbjct: 115 LVEE 118


>gi|218438113|ref|YP_002376442.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 7424]
 gi|218170841|gb|ACK69574.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 7424]
          Length = 147

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 18/146 (12%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG- 64
           FM AA+  +R   GL      +  ++VKDG ++GRG            HAE+  L  AG 
Sbjct: 8   FMQAAIAEAR--QGLQEGGIPIGSVLVKDGKILGRGHNKRVQDNDPVTHAEIDCLRNAGR 65

Query: 65  -EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
             + +    Y TL PC        CA  +++ GI++V+               +++   G
Sbjct: 66  VGQYQDTILYSTLMPCY------LCAGAVVQFGIKKVIAGESATFAGAR----EFMESHG 115

Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKR 149
           + V  +  +E K  +  ++    +  
Sbjct: 116 VEVIDLNLNECKQLMQDFIETNPKLW 141


>gi|221198274|ref|ZP_03571320.1| tRNA-specific adenosine deaminase [Burkholderia multivorans CGD2M]
 gi|221208213|ref|ZP_03581217.1| tRNA-specific adenosine deaminase [Burkholderia multivorans CGD2]
 gi|221171861|gb|EEE04304.1| tRNA-specific adenosine deaminase [Burkholderia multivorans CGD2]
 gi|221182206|gb|EEE14607.1| tRNA-specific adenosine deaminase [Burkholderia multivorans CGD2M]
          Length = 187

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 59/155 (38%), Gaps = 22/155 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEV 57
           P SS D  FM      +       +    V  ++V+   V+ RG     G      HAE+
Sbjct: 20  PASSRDVHFMRL--ALAAAEEARAAGEVPVGAVLVRGDEVLARGFNHPIGGHDPSAHAEM 77

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL  A +  +     G   YVTLEPC        CA  I+   I RVV    DP   V 
Sbjct: 78  AALRMAAQHLQNYRMPGCELYVTLEPCLM------CAGAIMHARIARVVFGAADPKTGVC 131

Query: 113 GRGLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
           G  +       L+    +V  ++ +E    L ++ 
Sbjct: 132 GSVMDAFANPQLNHHTEVVGGVLANECGAALKSFF 166


>gi|91772283|ref|YP_564975.1| CMP/dCMP deaminase, zinc-binding [Methanococcoides burtonii DSM
           6242]
 gi|91711298|gb|ABE51225.1| Guanine deaminase [Methanococcoides burtonii DSM 6242]
          Length = 159

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 57/159 (35%), Gaps = 19/159 (11%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEA 63
             FM AA++ ++  +      P    +IVKD  +I +G     G      HAE+ A+ +A
Sbjct: 7   EYFMDAAVKEAQKGMRNNEGGP-FGAVIVKDDTIISKGHNEVLGTNDPSAHAEIVAIRKA 65

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV---RVSGRG 115
                     G   Y T  PC      P C   I+   I ++       DV         
Sbjct: 66  SAALEDFDLSGCELYATTMPC------PMCLSAIMWARIGKIYYGTSTEDVASLGFDDGD 119

Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL 154
           +  + ++G+    + E + +      L  +  K+    +
Sbjct: 120 IYAMLREGVDTSVLSEVKIECENCYELFDEWSKKPDKRM 158


>gi|124516363|gb|EAY57871.1| putative zinc-binding cytidine/deoxycytidylate deaminase
           [Leptospirillum rubarum]
          Length = 164

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 20/114 (17%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTN-PSVACLIVK-DGIVIGRGVTAYGG----CPHAEVQ 58
           + D R+M+ AL  ++  +     N   +  ++V  +G V+GRG     G      HAE+ 
Sbjct: 10  NMDERWMTEALSEAKTAM---EKNEIPIGAILVDANGTVLGRGHNQRVGSTDPTAHAEIV 66

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           AL  +G   +     G T YVT+EPC        C   ++E  +  VV  + +P
Sbjct: 67  ALRTSGLHVKNYRLPGTTLYVTVEPCLM------CFGALLEARVETVVFGIREP 114


>gi|119718373|ref|YP_925338.1| hypothetical protein Noca_4154 [Nocardioides sp. JS614]
 gi|119539034|gb|ABL83651.1| bifunctional deaminase-reductase domain protein [Nocardioides sp.
           JS614]
          Length = 230

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 60/177 (33%), Gaps = 15/177 (8%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
            +   + + +  + D         S  I   + K     LRA +D I+VG GT  A    
Sbjct: 25  PRTPWLRVNMVGTVDGAATGETGTSGSINNAVDKQVFDHLRAAADVIVVGAGTARA---- 80

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN-- 264
                       P+ +I+     +      ++ A    V++ T      +  A       
Sbjct: 81  ----EGYHVADRPL-VIVSRRGDVPEQ---LQDAPAGAVLMATCEAAERVDRAREVLGAD 132

Query: 265 -INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
            + ++     DL  L  +L  RG  + L EGG  +    + + + D +       ++
Sbjct: 133 QVLVLGSHRVDLPLLKQVLADRGWANQLCEGGPHLLRDLLAAGVADELCTTTVPRLV 189


>gi|89892755|ref|YP_516242.1| hypothetical protein DSY0009 [Desulfitobacterium hafniense Y51]
 gi|219666080|ref|YP_002456515.1| CMP/dCMP deaminase zinc-binding [Desulfitobacterium hafniense
           DCB-2]
 gi|89332203|dbj|BAE81798.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536340|gb|ACL18079.1| CMP/dCMP deaminase zinc-binding [Desulfitobacterium hafniense
           DCB-2]
          Length = 148

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 22/149 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           +M  AL  +   +        +  ++V  G +I R             HAEV A++ A +
Sbjct: 6   YMRLALEEAE--IAFAQGEVPIGAVVVHKGEIIARAHNEKELRQDPTAHAEVLAVQRATQ 63

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL- 119
                    AT YVTLEPC      P CA  +++  ++ +V    D      G     L 
Sbjct: 64  ALGIWRLSEATLYVTLEPC------PMCAGSLVQARLKTLVFGAADLKGGAVGSVTNVLD 117

Query: 120 ----SQKGIIVDRMMESEGKIFLHAYLTR 144
               + +  +V  ++E E    L  +  +
Sbjct: 118 VNRWNHRVEVVAGILEEECAQILKDFFRK 146


>gi|33597610|ref|NP_885253.1| putative zinc-binding hydrolase [Bordetella parapertussis 12822]
 gi|33602013|ref|NP_889573.1| putative zinc-binding hydrolase [Bordetella bronchiseptica RB50]
 gi|33574038|emb|CAE38361.1| putative zinc-binding hydrolase [Bordetella parapertussis]
 gi|33576451|emb|CAE33529.1| putative zinc-binding hydrolase [Bordetella bronchiseptica RB50]
          Length = 168

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 55/156 (35%), Gaps = 23/156 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTA----YGGCPHAE 56
           P  + DAR M+ AL  ++    L      V  ++V   G V+G G            HAE
Sbjct: 11  PCVADDARLMALALEQAQEAARL--GEVPVGAVVVDAQGEVLGAGYNRTIIDRDPTAHAE 68

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL  A          G + YVTLEPC        C   ++   + RVV    DP    
Sbjct: 69  IVALRAAARRLDNYRLPGVSLYVTLEPC------VMCIGAMLHARLARVVYGARDPKTGA 122

Query: 112 SGRGLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
            G  L       L+    I   ++       L  + 
Sbjct: 123 CGSVLDVGAVGQLNHHTTITGGVLAEPCGELLRGFF 158


>gi|221195061|ref|ZP_03568117.1| tRNA-specific adenosine deaminase [Atopobium rimae ATCC 49626]
 gi|221184964|gb|EEE17355.1| tRNA-specific adenosine deaminase [Atopobium rimae ATCC 49626]
          Length = 198

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 43/114 (37%), Gaps = 17/114 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
           ++ D ++M  A   S            +  ++V DG VI               HAE  A
Sbjct: 41  AARDEKYMRLA--LSEAAAAAAEGEVPIGAVVVCDGEVIASAHNRREVDNSPSAHAEFLA 98

Query: 60  LEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           +EEA    +     G T YVTLEPC        CA  ++   I R V    DP 
Sbjct: 99  MEEASRVLKRWRLTGCTVYVTLEPCLM------CAGLMVNSRIDRCVFGACDPK 146


>gi|256827973|ref|YP_003156701.1| CMP/dCMP deaminase zinc-binding [Desulfomicrobium baculatum DSM
           4028]
 gi|256577149|gb|ACU88285.1| CMP/dCMP deaminase zinc-binding [Desulfomicrobium baculatum DSM
           4028]
          Length = 190

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 52/145 (35%), Gaps = 31/145 (21%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHAEVQALEE 62
             FM  AL+ +    G       V  ++V  +G ++GRG            HAE+ AL +
Sbjct: 33  EPFMCEALQLAGLAEGRGDV--PVGAVVVDGNGRILGRGENRTIFENDPTAHAEILALRQ 90

Query: 63  AG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AG          A   VTLEPC        C   +I+  +  VV    DP          
Sbjct: 91  AGAKVGNHRLTDAVLVVTLEPCIM------CLGAVIQARLAGVVYAAKDPK--------- 135

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYL 142
                G +V RM  +E     H + 
Sbjct: 136 ----AGCLVSRMSGTELPWSNHHFW 156


>gi|167563146|ref|ZP_02356062.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           oklahomensis EO147]
 gi|167570332|ref|ZP_02363206.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           oklahomensis C6786]
          Length = 193

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 55/153 (35%), Gaps = 22/153 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQA 59
           +  D R+M  AL  +       +    V  +IV+   VI RG     G      HAE+ A
Sbjct: 25  AERDRRYMRMALEAADEAR--AAGEVPVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAA 82

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           L  A          G   YVTLEPC        C+  I+   I RVV    DP     G 
Sbjct: 83  LRAAARALRNYRMPGCELYVTLEPCLM------CSGAIMHARIARVVFGAPDPKTGACGS 136

Query: 115 GLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
            +       L+    +   ++  E    L ++ 
Sbjct: 137 VVDAFADARLNHHTAVEGGVLADECGAALKSFF 169


>gi|123965353|ref|YP_001010434.1| RibD/RibG domain-containing protein [Prochlorococcus marinus str.
           MIT 9515]
 gi|123199719|gb|ABM71327.1| RibD/ribG C-terminal domain [Prochlorococcus marinus str. MIT 9515]
          Length = 220

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 69/199 (34%), Gaps = 12/199 (6%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
                + + IA S D  I     G   +     K  +    ++ DA + G+GT+ A    
Sbjct: 1   MNTPSVAIIIASSLDGRIAFPTGGESHLGSKEDKKMLDEHLSKVDATIFGLGTLKAHQST 60

Query: 207 LTCR------LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
              +         + +  P+ I+         D    +  +     +++ N   VL    
Sbjct: 61  YLVKNYCKNGEIKISKTQPISIVASNSKTFEKDWSYFQQPIKR--WLISSNKKDVLKNID 118

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
            +K I           + L  +   G+  L + GGA + +SFI   L+D I +  +  +I
Sbjct: 119 FEKEIFY----NNSWSETLLSIKKAGINRLALLGGAKLINSFIKEDLIDEIKITIAPRII 174

Query: 321 GEGGIPSPLEEGYLEKNFM 339
           G      P E+     N  
Sbjct: 175 GGKFTWIPAEQTSKIFNLK 193


>gi|238750377|ref|ZP_04611878.1| tRNA-specific adenosine deaminase [Yersinia rohdei ATCC 43380]
 gi|238711308|gb|EEQ03525.1| tRNA-specific adenosine deaminase [Yersinia rohdei ATCC 43380]
          Length = 195

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 49/121 (40%), Gaps = 19/121 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
            V  ++V D  VIG G            HAE+ AL + G+  +      AT YVTLEPC 
Sbjct: 53  PVGAILVLDNQVIGEGWNRPIRNNDPTAHAEIMALRQGGQAVQNYRLIDATLYVTLEPC- 111

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG----IIVDRMMESEGKI 136
                  CA  ++   IRR+V   +D     +G  L  L   G    I V   + +E   
Sbjct: 112 -----VMCAGAMVHSRIRRLVYGANDLKTGAAGSLLDILRHPGMNHQIEVCAGVLAESCS 166

Query: 137 F 137
            
Sbjct: 167 H 167


>gi|242794450|ref|XP_002482376.1| cytosine deaminase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218718964|gb|EED18384.1| cytosine deaminase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 186

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 65/172 (37%), Gaps = 22/172 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
            RFM  AL      + +  T   V C++V +G +IG G+        G  HAE  A+EEA
Sbjct: 20  ERFMKEALLMGEKALAVGET--PVGCVLVLNGKIIGSGMNDTNRSMNGTRHAEFLAIEEA 77

Query: 64  GEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            +       R    YVT+EPC        CA  + +  I RV     +     +G  L  
Sbjct: 78  LQTYPRSIFREVDLYVTVEPC------VMCASLLRQYNICRVFFGCANERFGGTGSVLSL 131

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG 165
            S   I     +   + +++  + L  +  ++ E   +   K     +    
Sbjct: 132 HSDPSIDPPYPVYGGIFKNDAIMLLRRFYIQENENAPNPRSKRNRELNTEFA 183


>gi|254463267|ref|ZP_05076683.1| cytosine deaminase [Rhodobacterales bacterium HTCC2083]
 gi|206679856|gb|EDZ44343.1| cytosine deaminase [Rhodobacteraceae bacterium HTCC2083]
          Length = 157

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 60/161 (37%), Gaps = 26/161 (16%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           M  +S    FM AAL  +R      +    V  ++VKDG +IGRG     T      HAE
Sbjct: 9   MKFTS----FMEAALVEARLAE--AAGEVPVGAVVVKDGAIIGRGRNATRTGCDPSAHAE 62

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ EA      +       YVTLEPC+       CA  I    + R+     DP    
Sbjct: 63  ILAIREACAVLGQDRLVDCDLYVTLEPCAM------CAGAIAHARVARLYYGASDPKSGG 116

Query: 112 SGRGLQWLSQKG-----IIVDRMMESEGKIFLHAYLTRQVE 147
              G +            + D +   E    L A+  R+  
Sbjct: 117 VTVGARVFDHAQSHHRPEVYDGIGADESGALLSAFFARKRY 157


>gi|83767797|dbj|BAE57936.1| unnamed protein product [Aspergillus oryzae]
          Length = 142

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 21/146 (14%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCPHAEVQALEEAGEEA 67
           AAL  ++   G       +   +V KDG ++GRG            HAE+ ALE +G   
Sbjct: 9   AALEEAK--QGYAEGGVPIGAALVSKDGKILGRGHNMRVQKGSATLHAEMSALENSGRLP 66

Query: 68  ----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
                GAT Y TL PC        C    I   ++RVV+  +   +       ++L  +G
Sbjct: 67  ASAYEGATMYTTLSPCDM------CTGACILYKVKRVVIGENKSFMGGE----EYLKNRG 116

Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKR 149
             +  +   E K  +  ++  + E  
Sbjct: 117 KELVVLNNEECKQLMEKFMKEKPELW 142


>gi|325287796|ref|YP_004263586.1| Guanine deaminase [Cellulophaga lytica DSM 7489]
 gi|324323250|gb|ADY30715.1| Guanine deaminase [Cellulophaga lytica DSM 7489]
          Length = 156

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 16/112 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           D +FM  A+  +   +      P   C+IVKDG +IG+G            HAEV A+ +
Sbjct: 3   DDKFMQEAVNAALKGMQNNEGGP-FGCVIVKDGKIIGKGNNKVTSTNDPTAHAEVTAIRD 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           A +     +  G   Y + EPC      P C   I      +V       D 
Sbjct: 62  ACKNLNSFQLDGCIIYTSCEPC------PMCLGAIYWARPEKVYYGSSQADA 107


>gi|114046813|ref|YP_737363.1| tRNA-adenosine deaminase [Shewanella sp. MR-7]
 gi|113888255|gb|ABI42306.1| tRNA-adenosine deaminase [Shewanella sp. MR-7]
          Length = 222

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 55/152 (36%), Gaps = 22/152 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
           D  +M   +  +       +    V  ++VK+G  I  G       +  C HAE+Q L  
Sbjct: 59  DEHWMR--VAMAMAEKAEAAGEVPVGAVLVKEGQQIAAGYNLSISEHDPCAHAEIQCLRA 116

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AG+          T YVTLEPC+       CA  ++   I RVV    D     +G  L 
Sbjct: 117 AGQTIENYRLLDTTLYVTLEPCAM------CAGAMVHSRIARVVFGAKDEKTGAAGTVLN 170

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTR 144
            L          +   ++  +    L  +  R
Sbjct: 171 LLQHPAFNHQVEVASGVLAQDCADQLSRFFKR 202


>gi|261188372|ref|XP_002620601.1| cytosine deaminase [Ajellomyces dermatitidis SLH14081]
 gi|239593201|gb|EEQ75782.1| cytosine deaminase [Ajellomyces dermatitidis SLH14081]
 gi|239609343|gb|EEQ86330.1| cytosine deaminase [Ajellomyces dermatitidis ER-3]
 gi|327354444|gb|EGE83301.1| cytosine deaminase [Ajellomyces dermatitidis ATCC 18188]
          Length = 143

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 64/155 (41%), Gaps = 20/155 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQ 58
           +S+ D  F++ AL  ++         P  ACL+ +DG ++GRG            H E+ 
Sbjct: 1   MSAQDPGFIA-ALEEAKKSAA-VGGIPIGACLVARDGKILGRGHNMRVQKGSATLHGEIA 58

Query: 59  ALEEAGEEAR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           ALE +G        GAT Y T+ PC        C    +   ++RVVV  +   +     
Sbjct: 59  ALENSGRLPASTYVGATMYTTMSPCDM------CTGACVLYKLKRVVVGENTTFMGGE-- 110

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
             Q+L  +G+ V  +   E    +  ++  + +  
Sbjct: 111 --QYLINRGVEVVVLDNKECIEMVQKFIQERPDIW 143


>gi|29828749|ref|NP_823383.1| hypothetical protein SAV_2208 [Streptomyces avermitilis MA-4680]
 gi|29605853|dbj|BAC69918.1| putative hydrolase [Streptomyces avermitilis MA-4680]
          Length = 272

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 70/205 (34%), Gaps = 13/205 (6%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD--DPEL 207
             +   +  + D         S PI+          LR  +D ++VG  TV  +   P  
Sbjct: 54  PWLRANMVTTLDG-AAQHEGRSQPISSAADMRIFGTLRGLADVVVVGAETVRQEGYRPAR 112

Query: 208 TC------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
                   R    Q  +P   ++     L     +  +AL+  +++      P    A  
Sbjct: 113 ARAEFAELRAAAGQGPAPAIAVVTASLDLDFSLPLFTSALVPTLVLTGAAAPPDRVAAAE 172

Query: 262 KKNINIIYCD---CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
           K    ++        D  + +  L   G+T LL EGG  +    + + ++D + L  S +
Sbjct: 173 KAGARVVVAGDGRGVDPARAVRALGDLGMTRLLTEGGPRLLGQLVAAGVLDEMCLALSPM 232

Query: 319 VI-GEGGIPSPLEEGYLEKNFMCVR 342
           ++ G+    +      +   F  V 
Sbjct: 233 LVAGDAQRIASGPSVAVPARFELVS 257


>gi|317034863|ref|XP_001400634.2| cytidine and deoxycytidylate deaminase zinc-binding domain protein
           [Aspergillus niger CBS 513.88]
          Length = 190

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 65/169 (38%), Gaps = 27/169 (15%)

Query: 1   MPVSSFD-----ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GG 51
           MP  S +     A FM  AL      +  T   P V C++V D  ++G G+        G
Sbjct: 5   MPSESLESNSEHAYFMKQALLMGEKAL-ETGETP-VGCVLVYDKKIVGFGMNDTNKSMNG 62

Query: 52  CPHAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
             HAE  A+EE  E       R    YVT+EPC        CA  + +  IR+V     +
Sbjct: 63  TRHAEFIAIEEMLETYPRSALRSTDLYVTVEPC------VMCASALRQYQIRKVYFGCGN 116

Query: 107 PDVRVSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRS 150
                +G  L   + + I     +   +   E  + L  +  ++ EK  
Sbjct: 117 DRFGGTGSILSLHADRSIDPSYPVQGGLFHKEAIMLLRRFYIQENEKAP 165


>gi|224023823|ref|ZP_03642189.1| hypothetical protein BACCOPRO_00539 [Bacteroides coprophilus DSM
           18228]
 gi|224017045|gb|EEF75057.1| hypothetical protein BACCOPRO_00539 [Bacteroides coprophilus DSM
           18228]
          Length = 146

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 54/147 (36%), Gaps = 32/147 (21%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC------------- 52
            D R+M  A+ ++            V  LIVK+ ++I  G                    
Sbjct: 12  LDKRYMRMAMIWAENSYCNRRK---VGALIVKNKMIISDGYNGTPAGFENVCEDEHGITI 68

Query: 53  ---PHAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               HAE  A   +  +   + GAT YVT  PC        CA+ II+ GI+RVV     
Sbjct: 69  PYVLHAEANAITKIARSNNSSEGATLYVTASPCIE------CAKLIIQAGIKRVVYGEKY 122

Query: 107 PDVRVSGRGLQWLSQKGIIVDRMMESE 133
                   GL  L +  I +  + + E
Sbjct: 123 RL----EDGLNLLKKANIEIVYINKDE 145


>gi|282858963|ref|ZP_06268101.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella bivia JCVIHMP010]
 gi|282588243|gb|EFB93410.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella bivia JCVIHMP010]
          Length = 150

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 17/145 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  +M  AL  ++         P +  ++V    +I R      T +    HAE+QA+  
Sbjct: 10  DIYYMQRALDEAKQA-YKEGEIP-IGAIVVCKNKIIARAHNLTETLHDVTAHAEMQAITI 67

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G+     T YVT+EPC        CA  +    I+RVV    D          +
Sbjct: 68  AANELGGKYLEDCTLYVTVEPCIM------CAGALGWSQIKRVVFGCLDEKRGYHEYAPK 121

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYL 142
            L  K  ++  +++SE K  +  + 
Sbjct: 122 ALHPKANVIGGVLDSECKALMQRFF 146


>gi|326799622|ref|YP_004317441.1| CMP/dCMP deaminase zinc-binding protein [Sphingobacterium sp. 21]
 gi|326550386|gb|ADZ78771.1| CMP/dCMP deaminase zinc-binding protein [Sphingobacterium sp. 21]
          Length = 149

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 46/129 (35%), Gaps = 36/129 (27%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M   SFD  FM+ AL  +     + +    V  ++ KD  +I  G               
Sbjct: 1   MTKPSFDEIFMNLALELAERSHCVKA---HVGAVLAKDTRIISIGYNGPPSGTHNCDQEW 57

Query: 54  -----------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFII 93
                            HAE  A+  A   G   +GAT Y TL PC       PCA+ I 
Sbjct: 58  PLEGCARDSKGSCSLALHAEENAILYAVKNGAGLQGATLYTTLSPCL------PCARLIY 111

Query: 94  ECGIRRVVV 102
             GI +V+ 
Sbjct: 112 SAGIVKVLY 120


>gi|262375359|ref|ZP_06068592.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
 gi|262309613|gb|EEY90743.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
          Length = 171

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 59/168 (35%), Gaps = 32/168 (19%)

Query: 1   MPVSSF-DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
           M  + F D  +M  A       +        V  +IV    +IG+G  A         HA
Sbjct: 1   MSETQFTDEYWMQRAYEQ--AALAAAQGEIPVGAIIVSQNQIIGQGFNAPISLNDPTAHA 58

Query: 56  EVQALEEAGEEAR------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           E+ AL +A +  +       A  YVTLEPC        C   ++   + RVV    +   
Sbjct: 59  EIVALRDACQNIQNYRLPDDAVLYVTLEPC------TMCVGALVHSRVSRVVFGAFE--- 109

Query: 110 RVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
                     ++ G +V      E   + H +  +    +   + +++
Sbjct: 110 ----------AKAGSLVSARQLFETGYYNHVFPFQAGCMQQQCSEQLS 147


>gi|56961816|ref|YP_173538.1| cytosine/adenosine deaminase [Bacillus clausii KSM-K16]
 gi|56908050|dbj|BAD62577.1| cytosine/adenosine deaminase [Bacillus clausii KSM-K16]
          Length = 165

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 20/129 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEA-----RGATAYVTLEPCS 80
            +  +I+K+G +I               HAE+ A+E+A ++       G T YVTLEPC 
Sbjct: 27  PIGAVIIKEGKLIASAYNLREANHSALAHAELLAIEQANKKLGAWRLEGCTLYVTLEPC- 85

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS-----QKGIIVDRMMESEGK 135
                P CA  I++  I  VV    D     +G  +  L       +  ++  ++E    
Sbjct: 86  -----PMCAGAIVQSRIPTVVYGAQDQKAGCAGTLMNLLQEQRFNHRCEVISGVLEEGCG 140

Query: 136 IFLHAYLTR 144
             L A+  +
Sbjct: 141 EKLSAFFRK 149


>gi|300113843|ref|YP_003760418.1| CMP/dCMP deaminase zinc-binding protein [Nitrosococcus watsonii
           C-113]
 gi|299539780|gb|ADJ28097.1| CMP/dCMP deaminase zinc-binding protein [Nitrosococcus watsonii
           C-113]
          Length = 155

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 42/113 (37%), Gaps = 16/113 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
           ARFM+ A+  +   +G     P    ++V+DG ++GR             HAEVQA+  A
Sbjct: 3   ARFMAEAISLASKGMGDGLGGP-FGAVVVRDGEILGRACNDVIALRDPTAHAEVQAIRMA 61

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
                     G T Y + EPC      P C        I R+       D   
Sbjct: 62  CRNLNDFHLEGCTLYCSCEPC------PMCLGAAYWARIARIYYAAGQEDAAH 108


>gi|146416895|ref|XP_001484417.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 150

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 19/155 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQ 58
           ++  D + ++ A+  ++         P    LI +DG V+GRG            H E+ 
Sbjct: 1   MAFDDEKGLAIAIEEAKKG-YEEGGVPIGGALISEDGTVLGRGHNLRFQKDSATLHGEIS 59

Query: 59  ALEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
            LE AG       +  T Y TL PCS       C+   I  G++RVVV  ++  +     
Sbjct: 60  TLENAGRLKGSVYKNCTMYTTLSPCSM------CSGACIMYGVKRVVVGENETFMGAE-- 111

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
              W+ + GI V  +   E K  +  ++  + +  
Sbjct: 112 --DWIRKLGIEVVNLNNQECKDLMAKFIKERPQDW 144


>gi|71907361|ref|YP_284948.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Dechloromonas aromatica RCB]
 gi|71846982|gb|AAZ46478.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
           [Dechloromonas aromatica RCB]
          Length = 157

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 12/146 (8%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D +F++ A+  +R         P    +IV+DG +I  G            HAE+ A+  
Sbjct: 4   DDQFLARAIELARQGSESGEGGP-FGAVIVRDGRIIAEGWNRVVASHDPTAHAEIGAIRT 62

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCA--QFIIECGIRRVVVCVDDPDVRVSGRG 115
           A          G T Y + EPC     +   A  + I+    R     +   D  +    
Sbjct: 63  ACAGQDHFHLHGCTLYASSEPCPMCLSAAYWARIERIVFANSRAEAAAIGFCDDELYSEL 122

Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAY 141
            +  S + I+++          L ++
Sbjct: 123 NRHFSARSIVMEHHPMPGALEPLESW 148


>gi|224087290|ref|XP_002308113.1| predicted protein [Populus trichocarpa]
 gi|222854089|gb|EEE91636.1| predicted protein [Populus trichocarpa]
          Length = 155

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 48/136 (35%), Gaps = 26/136 (19%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
           SS    FM  A+  +   +   S    V C+IV+DG VI  G            HAE++A
Sbjct: 10  SSETLAFMELAIEQAEDALN--SLEVPVGCVIVEDGKVIASGRNRTTETRNATRHAEMEA 67

Query: 60  LE--------------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           ++              E  E+    + YVT EPC        CA  +   GI+ V     
Sbjct: 68  IDVLLEQWQKIGLSVSEVAEKISTCSLYVTCEPCIM------CAAALSILGIKEVYYGCA 121

Query: 106 DPDVRVSGRGLQWLSQ 121
           +      G  L     
Sbjct: 122 NDKFGGCGSILSLHCS 137


>gi|192360046|ref|YP_001980851.1| cytosine deaminase [Cellvibrio japonicus Ueda107]
 gi|190686211|gb|ACE83889.1| cytosine deaminase [Cellvibrio japonicus Ueda107]
          Length = 146

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 20/148 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQALEEAG- 64
           FM AAL  +R   G       +  ++V DG ++GRG       G    HAE+  LE AG 
Sbjct: 5   FMQAALEEARK--GRREGGIPIGSVLVIDGRIVGRGHNQRVQKGSCVLHAEMDCLENAGR 62

Query: 65  ---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
               + R AT Y TL PC     +      ++  GI +VVV  +            ++  
Sbjct: 63  LKASDYRRATLYSTLSPCDMCSGT------VLLYGIPKVVVGENLSFQGPE----AYVRS 112

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           +G+ +D   ++E K  +  ++ +Q    
Sbjct: 113 RGVELDIRDDAECKQLMQDFIAQQPALW 140


>gi|170695254|ref|ZP_02886401.1| CMP/dCMP deaminase zinc-binding [Burkholderia graminis C4D1M]
 gi|170139874|gb|EDT08055.1| CMP/dCMP deaminase zinc-binding [Burkholderia graminis C4D1M]
          Length = 166

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 50/127 (39%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
            V  ++V+   VI  G     G      HAE+ AL  A + A+     G   YVTLEPC 
Sbjct: 18  PVGAVLVRGDEVIATGFNHPIGAHDPSAHAEMVALRAAAQVAQNYRLPGCELYVTLEPCL 77

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  CA  I+   I RVV    DP     G  +       L+    +   ++ESE  
Sbjct: 78  M------CAGAIMHARIARVVFGARDPKTGACGSVVDAFANPQLNHHTEVTGGVLESECG 131

Query: 136 IFLHAYL 142
             L ++ 
Sbjct: 132 AALKSFF 138


>gi|88856373|ref|ZP_01131032.1| hypothetical protein A20C1_00495 [marine actinobacterium PHSC20C1]
 gi|88814457|gb|EAR24320.1| hypothetical protein A20C1_00495 [marine actinobacterium PHSC20C1]
          Length = 255

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 59/187 (31%), Gaps = 12/187 (6%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA----- 202
               +      S D         S  +          LLR  +D I+VG GTV       
Sbjct: 33  TMPWLRANFVSSIDG-AATHEGTSGGLGTEADGRVFALLRRLADVIVVGAGTVRQEGYRN 91

Query: 203 ---DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
              DD  +  R +      P   ++    ++  D   + T    P +I T++        
Sbjct: 92  LALDDDAVAWRTSNGLSAQPPFALVSASLRIEPDD--LATYATRPFVITTQSAPAEARAR 149

Query: 260 FRK-KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
                 + +   +  D  +L   L  RG      EGG  +  + I   +VD + L  S  
Sbjct: 150 LEAVAEVIVAGDEQVDTVELKRTLAERGYPQQHGEGGPTLFATMIGQGVVDELCLTVSPR 209

Query: 319 VIGEGGI 325
           + G    
Sbjct: 210 LEGGSAR 216


>gi|168039996|ref|XP_001772482.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676279|gb|EDQ62764.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 353

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 54/163 (33%), Gaps = 32/163 (19%)

Query: 1   MPVSSFDA---RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCP 53
           M   + D    +FM  A   +R  +        V C+IV DG VIGRG            
Sbjct: 156 MAGVADDESIMKFMKLAFIEAREALARLEV--PVGCVIVNDGEVIGRGSNCTNETRNATR 213

Query: 54  HAEVQALEEA----------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
           HAE+ A++                   E  +    YVT EPC        CA  +   G 
Sbjct: 214 HAEMVAIDMVLSKWQQLSATPNVNPSTEGFQQCDLYVTCEPCIM------CAAALSLSGF 267

Query: 98  RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
           R++    D+      G  L   S  G     +  +E +     
Sbjct: 268 RKIYYGCDNERFGGCGSVLDIHSD-GCAPCGLSHNEAEEHEEQ 309


>gi|58698581|ref|ZP_00373480.1| cytidine and deoxycytidylate deaminase family protein [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58534906|gb|EAL59006.1| cytidine and deoxycytidylate deaminase family protein [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 148

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 14/142 (9%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEA--GE 65
           ++M  A+  ++      +    +  +IV    +I      +     HAE+ A+ +A    
Sbjct: 12  QYMELAIEQAKLAQ--KNDEVPIGAVIVSGDNIISSAHNISSDPTAHAEMLAIRQAFSTS 69

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD---VRVSGRGLQWLSQK 122
                  YVTLEPC      P CAQ I    I+R+     +P    +    +  Q+ S  
Sbjct: 70  TLCDTDMYVTLEPC------PMCAQAISFARIKRLYFGAYNPKGGGIENGAKIFQFCSHI 123

Query: 123 GIIVDRMMESEGKIFLHAYLTR 144
             +   ++E+E    L  +  +
Sbjct: 124 PEVYGGILETECSFLLKDFFEK 145


>gi|253998683|ref|YP_003050746.1| CMP/dCMP deaminase zinc-binding [Methylovorus sp. SIP3-4]
 gi|253985362|gb|ACT50219.1| CMP/dCMP deaminase zinc-binding [Methylovorus sp. SIP3-4]
          Length = 175

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/127 (29%), Positives = 52/127 (40%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  L+V DG +IGRG+ A  G      HAE+QA+ EA          G T YVTLEPC+
Sbjct: 37  PVGALVVLDGKIIGRGMNAPIGSHDPTAHAEIQAMREAAAAIGNYRLVGCTLYVTLEPCA 96

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGK 135
                  C+  I    I R+V    DP     G  +       L+    +   ++  E  
Sbjct: 97  M------CSGAIQHARIARLVYGARDPKTGSCGSVIDLMAESRLNHHTEVAGGILAEECG 150

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 151 SMLSRFF 157


>gi|315641449|ref|ZP_07896521.1| tRNA-specific adenosine deaminase [Enterococcus italicus DSM 15952]
 gi|315482737|gb|EFU73261.1| tRNA-specific adenosine deaminase [Enterococcus italicus DSM 15952]
          Length = 186

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 22/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
           A FM AA+  ++    +      +  ++V +G +IGRG     T      HAE+ A+ EA
Sbjct: 28  AYFMCAAIGEAKKAQAIAEV--PIGAVVVLEGEIIGRGHNLRETTQDATMHAEMIAIREA 85

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
             +        +  +VTLEPC      P C    +   +  +     DP    +G  L  
Sbjct: 86  CAKVGSWRLEDSQLFVTLEPC------PMCGGAAMLSRVEEIYFGAYDPKGGATGSLLNL 139

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYL 142
            + +       +   ++++E    L  + 
Sbjct: 140 ATDERFNHWSYVEAGILQAECSDLLRTFF 168


>gi|238486578|ref|XP_002374527.1| cytosine deaminase, putative [Aspergillus flavus NRRL3357]
 gi|317144152|ref|XP_001819938.2| cytosine deaminase [Aspergillus oryzae RIB40]
 gi|220699406|gb|EED55745.1| cytosine deaminase, putative [Aspergillus flavus NRRL3357]
          Length = 148

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 21/146 (14%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCPHAEVQALEEAGEEA 67
           AAL  ++   G       +   +V KDG ++GRG            HAE+ ALE +G   
Sbjct: 9   AALEEAK--QGYAEGGVPIGAALVSKDGKILGRGHNMRVQKGSATLHAEMSALENSGRLP 66

Query: 68  ----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
                GAT Y TL PC        C    I   ++RVV+  +   +       ++L  +G
Sbjct: 67  ASAYEGATMYTTLSPCDM------CTGACILYKVKRVVIGENKSFMGGE----EYLKNRG 116

Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKR 149
             +  +   E K  +  ++  + E  
Sbjct: 117 KELVVLNNEECKQLMEKFMKEKPELW 142


>gi|254411343|ref|ZP_05025120.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196181844|gb|EDX76831.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 143

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 60/150 (40%), Gaps = 19/150 (12%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
            D  FM+AA+  ++   GL      +  ++VK+G +IG+G            HAE+  L 
Sbjct: 1   MDE-FMAAAIAQAK--QGLREGGIPIGSVLVKEGQIIGQGYNKRVQDNDPVTHAEIDCLR 57

Query: 62  EAG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
            AG          Y TL PC        CA  +++ GI++V+               +++
Sbjct: 58  HAGRIGNYNDTILYSTLMPCY------LCAGAVVQFGIKKVIAGESQTFAGAR----EFM 107

Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
              G+ V  +   E +  +  ++ +  +  
Sbjct: 108 ESHGVEVVDLNLEECQQMMSDFIQQHPKLW 137


>gi|150024567|ref|YP_001295393.1| dCMP deaminase [Flavobacterium psychrophilum JIP02/86]
 gi|149771108|emb|CAL42575.1| dCMP deaminase [Flavobacterium psychrophilum JIP02/86]
          Length = 142

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 30/145 (20%)

Query: 9   RFMSAALRFSRWHVGLTSTN-PSVACLIVKDGIVIGRGVT-----------AYGGCP--- 53
           ++  A LR ++    L+  N   V  +IV+D ++I  G                G     
Sbjct: 8   KYDKAYLRLAKEWSKLSYCNRKQVGAIIVRDKMIISDGYNGSPSGFENCCEEQDGTTKWY 67

Query: 54  --HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
             HAE  A+     + +   GAT Y+TL PC        C++ I + GI+RVV   D  D
Sbjct: 68  ILHAEANAILKVARSTQSCEGATLYITLSPCKE------CSKLIHQSGIKRVVYLEDYKD 121

Query: 109 VRVSGRGLQWLSQKGIIVDRMMESE 133
                 GL++L + G++V+++ E E
Sbjct: 122 ----NSGLEFLEKAGVLVEQIEEIE 142


>gi|189426160|ref|YP_001953337.1| CMP/dCMP deaminase zinc-binding [Geobacter lovleyi SZ]
 gi|189422419|gb|ACD96817.1| CMP/dCMP deaminase zinc-binding [Geobacter lovleyi SZ]
          Length = 157

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 53/148 (35%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAG 64
            +M  A+  +R    +      + C+IV++  +I R             HAE+ A+ +A 
Sbjct: 7   YWMDKAIAEARKAEVIAEV--PIGCVIVQNNRIIARAHNLREAKQDPAAHAELLAIRKAA 64

Query: 65  EEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW- 118
            +         T YVTLEPC        C   I+   I  VV    DP    +G      
Sbjct: 65  RKLGNWRLLETTLYVTLEPCLM------CMGAILLARIPTVVFGCHDPKAGAAGSLYDLS 118

Query: 119 ----LSQKGIIVDRMMESEGKIFLHAYL 142
               L+ +  +V  +   E    L  + 
Sbjct: 119 NDPRLNHRFELVSGIRRQECSSMLSEFF 146


>gi|70732252|ref|YP_262008.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           fluorescens Pf-5]
 gi|68346551|gb|AAY94157.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           fluorescens Pf-5]
          Length = 162

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  ++V DG VIGRG            HAE+ A+ EA +        G+T YVTLEPCS
Sbjct: 36  PVGAVLVLDGQVIGRGYNCPISGSDPSAHAEMVAIREAAQAVSNYRLPGSTLYVTLEPCS 95

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  CA  I+   I RVV    +P   +     Q     +L+ + +    ++  E  
Sbjct: 96  M------CAGLIVHSRIARVVYGALEPKAGIVQSQGQFFTQGFLNHRVLYEGGVLAEECG 149

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 150 TVLSEFF 156


>gi|225011298|ref|ZP_03701754.1| CMP/dCMP deaminase zinc-binding [Flavobacteria bacterium MS024-3C]
 gi|225004554|gb|EEG42520.1| CMP/dCMP deaminase zinc-binding [Flavobacteria bacterium MS024-3C]
          Length = 166

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 43/111 (38%), Gaps = 17/111 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
           DA FM  AL  +            V  L+V +  +I RG            HAE+QA+  
Sbjct: 12  DAYFMKLALAEA--AHAFEKGEVPVGALVVANDRIIARGHNLTEQLTDVTAHAEMQAITA 69

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           A     G+     T YVTLEPC        CA  +    I +VV    DP 
Sbjct: 70  AAHHLGGKYLHNCTLYVTLEPCLM------CAGALYWSQISKVVYGASDPK 114


>gi|254247929|ref|ZP_04941250.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
           [Burkholderia cenocepacia PC184]
 gi|124872705|gb|EAY64421.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
           [Burkholderia cenocepacia PC184]
          Length = 162

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 48/127 (37%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
            V  ++V+   VI RG     G      HAE+ AL  A +  +     G   YVTLEPC 
Sbjct: 21  PVGAVLVRGDEVIARGFNHPIGGHDPSAHAEMAALRMAAQHLQNYRMPGCELYVTLEPCL 80

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  CA  I+   I RVV    DP     G  +       L+    +   ++  E  
Sbjct: 81  M------CAGAIMHARIARVVYGAADPKTGACGSVIDAFANPQLNHHTEVTGGVLADECG 134

Query: 136 IFLHAYL 142
             L ++ 
Sbjct: 135 AALKSFF 141


>gi|120611742|ref|YP_971420.1| CMP/dCMP deaminase [Acidovorax citrulli AAC00-1]
 gi|120590206|gb|ABM33646.1| CMP/dCMP deaminase, zinc-binding protein [Acidovorax citrulli
           AAC00-1]
          Length = 484

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 62/179 (34%), Gaps = 22/179 (12%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M  AL+              V  ++V+DG ++ RG  A         HAE+ AL  
Sbjct: 19  DEAWMRIALQ--EAAEAAARGEIPVGAVVVRDGELVARGSNAPIAGHDPTAHAEIVALRA 76

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A          G T YVTLEPC+       C+  ++   + RVV    D     +G  + 
Sbjct: 77  AAGRLGNYRLDGCTLYVTLEPCAM------CSGAMLHARLDRVVYGAPDAKTGAAGSVVD 130

Query: 118 W-----LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS 171
                 L+    I   ++  E    L  +   + E R          +D+ +       
Sbjct: 131 LFAQPALNHHTRIEGGVLAQECGALLSGFFQSRREARRAHARAALPLRDDALRTPDARF 189


>gi|172038865|ref|YP_001805366.1| cytosine deaminase [Cyanothece sp. ATCC 51142]
 gi|171700319|gb|ACB53300.1| probable cytosine deaminase [Cyanothece sp. ATCC 51142]
          Length = 150

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 19/150 (12%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALE 61
            D  FM AA+  ++  +  T   P +  ++VK   +IGRG       G P  HAE+  L 
Sbjct: 8   MDE-FMKAAIAEAKQGL-KTGGIP-IGSVLVKHNKIIGRGHNKRVQDGDPITHAEIDCLR 64

Query: 62  EAG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
            AG     +    Y TL PC        CA  +++  I++V+               Q++
Sbjct: 65  NAGRIGNYQDTVLYSTLMPCY------LCAGAVVQFNIKKVIAGESKTFTGAK----QFM 114

Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
              G+ V  +  +E +  +  ++ +     
Sbjct: 115 ESHGVEVIDLDLAECQDLMKQFIEKNPRLW 144


>gi|77164674|ref|YP_343199.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Nitrosococcus oceani ATCC 19707]
 gi|254434877|ref|ZP_05048385.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Nitrosococcus oceani AFC27]
 gi|76882988|gb|ABA57669.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
           [Nitrosococcus oceani ATCC 19707]
 gi|207091210|gb|EDZ68481.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Nitrosococcus oceani AFC27]
          Length = 190

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 16/109 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
           ++M  A+  SR  + L    P    +I K+G ++G G            HAE++A+ +A 
Sbjct: 38  QWMRRAIELSRKAMELGDGFP-FGSVIAKEGEIVGEGWNRSWVNRDPSAHAEIEAIRDAC 96

Query: 65  EE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           +        G   Y + +PC      P C   I   G  R+    +D D
Sbjct: 97  KRLDTLSLEGCDVYASAQPC------PMCIAAIYWAGADRIFFGNNDRD 139


>gi|307154712|ref|YP_003890096.1| CMP/dCMP deaminase zinc-binding protein [Cyanothece sp. PCC 7822]
 gi|306984940|gb|ADN16821.1| CMP/dCMP deaminase zinc-binding protein [Cyanothece sp. PCC 7822]
          Length = 147

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 18/147 (12%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
            FM AA+  ++   GL      +  ++VKDG ++GRG            HAE+  L  AG
Sbjct: 7   HFMQAAIAEAK--QGLQEGGIPIGSVLVKDGQIVGRGHNKRVQDNDPVTHAEIDCLRNAG 64

Query: 65  --EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
              +   +  Y TL PC        CA  +++ GI+RV+                ++   
Sbjct: 65  RIGQYGDSILYSTLMPCY------LCAGAVVQFGIKRVIAGESLTFAGAK----NFMESH 114

Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKR 149
           G+ V  +   E K  +  ++ +     
Sbjct: 115 GVEVIDLDLEECKQLMKDFIAKNPRLW 141


>gi|163787392|ref|ZP_02181839.1| cytidine/deoxycytidylate deaminase family protein [Flavobacteriales
           bacterium ALC-1]
 gi|159877280|gb|EDP71337.1| cytidine/deoxycytidylate deaminase family protein [Flavobacteriales
           bacterium ALC-1]
          Length = 159

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 16/111 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
            +FM  A+  +   +      P   C++VKDG ++GRG            HAEV A+ +A
Sbjct: 7   EKFMLEAVNAALKGMNNNEGGP-FGCVVVKDGEIVGRGNNKVTSTNDPTAHAEVTAIRDA 65

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
            +     +  G   Y + EPC      P C   I      +V    +  D 
Sbjct: 66  CKNLDSFQLEGCQIYTSCEPC------PMCLGAIYWARPDKVYYGSNQVDA 110


>gi|329943103|ref|ZP_08291877.1| cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Chlamydophila psittaci Cal10]
 gi|332287685|ref|YP_004422586.1| cytidine/deoxycytidylate deaminase family protein [Chlamydophila
           psittaci 6BC]
 gi|325506881|gb|ADZ18519.1| cytidine/deoxycytidylate deaminase family protein [Chlamydophila
           psittaci 6BC]
 gi|328814650|gb|EGF84640.1| cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Chlamydophila psittaci Cal10]
          Length = 148

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 49/141 (34%), Gaps = 21/141 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEE 66
           M+ AL+ +R           V C+IVKD  +I RG            HAE+  +  A + 
Sbjct: 1   MNQALKEARQA--YDEDEVPVGCVIVKDNKIIARGHNTTEKLQDPTAHAEILCIGAAAQY 58

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                      Y TLEPC        CA  I +  IRR+V    D  +   G  +    +
Sbjct: 59  LENWRLVDTVLYCTLEPCLM------CAGAIQQARIRRIVWAAPDLRLGAGGSWINVFKE 112

Query: 122 ----KGIIVDRMMESEGKIFL 138
                 +     +  E    L
Sbjct: 113 KHPFHQVECCSGICREDAEQL 133


>gi|258593876|emb|CBE70217.1| Cytosine deaminase (Cytosine aminohydrolase) [NC10 bacterium 'Dutch
           sediment']
          Length = 154

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 18/148 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEA 63
            RF+ AA   +R           +  ++V++  VI  G       G P  H E+  L +A
Sbjct: 9   QRFIRAAFEQARKSYNEGGL--PIGAVMVENSTVIAVGHNRRVQDGDPTAHGEMDCLRQA 66

Query: 64  GEEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           G   R  G T Y TL PC     +      +++ GI+RVV+             ++ L  
Sbjct: 67  GRRPRYDGITLYTTLSPCMMCSGT------VLQFGIKRVVIGEKQNFPG----NVELLRN 116

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            G+ V  + + E    +  ++  + +  
Sbjct: 117 HGVDVIVLDDPECISLMQRFMRERPDLW 144


>gi|194015030|ref|ZP_03053647.1| cytidine/deoxycytidylate deaminase family protein [Bacillus pumilus
           ATCC 7061]
 gi|194014056|gb|EDW23621.1| cytidine/deoxycytidylate deaminase family protein [Bacillus pumilus
           ATCC 7061]
          Length = 156

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 42/115 (36%), Gaps = 16/115 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA 63
             F+  A+  +   V   +  P    +IVKDG +I  G     T      HAEV A+ +A
Sbjct: 4   EDFLQRAIDLAVEGVNSGTGGP-FGAVIVKDGQIIAEGSNNVTTTNDPTAHAEVTAIRKA 62

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            +     +      Y + EPC      P C   I     + V       D  VSG
Sbjct: 63  CQTLNTYQLEDCILYTSCEPC------PMCLGAIYWARPKAVYFAAGHQDAAVSG 111


>gi|157691996|ref|YP_001486458.1| guanine deaminase [Bacillus pumilus SAFR-032]
 gi|157680754|gb|ABV61898.1| guanine deaminase [Bacillus pumilus SAFR-032]
          Length = 156

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 42/115 (36%), Gaps = 16/115 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA 63
             F+  A+  +   V   +  P    +IVKDG +I  G     T      HAEV A+ +A
Sbjct: 4   EDFLQRAIDLAVEGVNSGTGGP-FGAVIVKDGQIIAEGSNNVTTTNDPTAHAEVTAIRKA 62

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            +     +      Y + EPC      P C   I     + V       D  VSG
Sbjct: 63  CQTLNTYQLEDCILYTSCEPC------PMCLGAIYWARPKAVYFAAGHQDAAVSG 111


>gi|120404967|ref|YP_954796.1| deaminase-reductase domain-containing protein [Mycobacterium
           vanbaalenii PYR-1]
 gi|119957785|gb|ABM14790.1| bifunctional deaminase-reductase domain protein [Mycobacterium
           vanbaalenii PYR-1]
          Length = 251

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 67/196 (34%), Gaps = 15/196 (7%)

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +      +R  +      S D  + +       +     +     LR  +D +LVG  T 
Sbjct: 27  FAYPDGLQRPWLRANFIASIDGAVTLE-GSGRRLGTDTDRRVFARLREVADVVLVGAATA 85

Query: 201 LAD-----DPELTCRL----NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251
            A            R+    +GL    P+ ++      +     ++  A + PV++++  
Sbjct: 86  TAKPYVDIQMSEDARVWRMSHGLAPELPVAVV-SSRGVVPP--HLLNNATVPPVVLMSAG 142

Query: 252 DDPVLALAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
                  A  +    +   D R +    +   L G G+  +LVEGG  +    ++   +D
Sbjct: 143 ASAAARRAVDQSGARVKEFDGRLVTSAAIRDALGGLGLHRVLVEGGPTLFSQLVSDNEID 202

Query: 310 SIILYRSQIVIGEGGI 325
            + L  S  ++     
Sbjct: 203 ELCLTTSPKMVAGPAR 218


>gi|262384051|ref|ZP_06077187.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|301310955|ref|ZP_07216884.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
           20_3]
 gi|262294949|gb|EEY82881.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|300831018|gb|EFK61659.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
           20_3]
          Length = 146

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 50/145 (34%), Gaps = 17/145 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           D  FM  AL  +R     +     V  +I+ +  +I R             HAE+ A+  
Sbjct: 6   DEYFMKQALVEARAAA--SEGEVPVGAVIICNNQIIARAHNQTECLNDVTAHAEMLAITA 63

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A      +     + YVT+EPC        CA  I    +  +V    D     S    Q
Sbjct: 64  AAGVLGAKYLTNCSLYVTVEPCIM------CAGAIGWAQLSTIVYGASDDKRGFSKFAPQ 117

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYL 142
               K II   ++E E    +  + 
Sbjct: 118 AFHPKAIIKKGILEKECAEEMQRFF 142


>gi|220918454|ref|YP_002493758.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956308|gb|ACL66692.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 246

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 8/143 (5%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLL 279
           I LDP  +L  +S  I       V+  TE          R + ++ ++   D  D+  +L
Sbjct: 97  IALDPSGRLRWESGAIDAEHAVTVL--TERVPDRYLRFLRDRGVSYLFGGRDRIDVPAVL 154

Query: 280 TILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
             L  R G+  LL+EGG  +  SF+ + ++D + L  + +  G  G P+  + G      
Sbjct: 155 GKLRARLGIRRLLLEGGGKINGSFLAAGVIDELSLLVAPVADGSVGTPALFDAGESGPRL 214

Query: 339 M---CVRRDYFGSDVCLEYIGKN 358
                      G  + + Y   N
Sbjct: 215 RLRLLSAERRPGDLLWVRYRVVN 237


>gi|78066752|ref|YP_369521.1| tRNA-adenosine deaminase [Burkholderia sp. 383]
 gi|107028852|ref|YP_625947.1| CMP/dCMP deaminase, zinc-binding [Burkholderia cenocepacia AU 1054]
 gi|116689989|ref|YP_835612.1| CMP/dCMP deaminase, zinc-binding [Burkholderia cenocepacia HI2424]
 gi|170733328|ref|YP_001765275.1| CMP/dCMP deaminase zinc-binding [Burkholderia cenocepacia MC0-3]
 gi|77967497|gb|ABB08877.1| tRNA-adenosine deaminase [Burkholderia sp. 383]
 gi|105898016|gb|ABF80974.1| tRNA-adenosine deaminase [Burkholderia cenocepacia AU 1054]
 gi|116648078|gb|ABK08719.1| tRNA-adenosine deaminase [Burkholderia cenocepacia HI2424]
 gi|169816570|gb|ACA91153.1| CMP/dCMP deaminase zinc-binding [Burkholderia cenocepacia MC0-3]
          Length = 159

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 48/127 (37%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
            V  ++V+   VI RG     G      HAE+ AL  A +  +     G   YVTLEPC 
Sbjct: 18  PVGAVLVRGDEVIARGFNHPIGGHDPSAHAEMAALRMAAQHLQNYRMPGCELYVTLEPCL 77

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  CA  I+   I RVV    DP     G  +       L+    +   ++  E  
Sbjct: 78  M------CAGAIMHARIARVVYGAADPKTGACGSVIDAFANPQLNHHTEVTGGVLADECG 131

Query: 136 IFLHAYL 142
             L ++ 
Sbjct: 132 AALKSFF 138


>gi|323701686|ref|ZP_08113358.1| CMP/dCMP deaminase zinc-binding protein [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533459|gb|EGB23326.1| CMP/dCMP deaminase zinc-binding protein [Desulfotomaculum
           nigrificans DSM 574]
          Length = 144

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE- 65
           M  AL  ++           +  ++V +G ++GRG            HAE+ A+ EA + 
Sbjct: 1   MREALVEAQKAA--EKGEVPIGAVVVAEGAIVGRGHDLRESLCDASAHAEILAMREAAKQ 58

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW--- 118
                   AT YVT+EPC+       CA  I++  +RR+V    +P        L     
Sbjct: 59  LGDWRLNHATLYVTVEPCAM------CAGAIVQFRVRRLVYGAPNPKAGSVDSILDIVHQ 112

Query: 119 --LSQKGIIVDRMMESEGKIFLHAYL 142
              + +  ++  +ME E +  +  + 
Sbjct: 113 PRFNHRVEVISGIMEDECRAVIQNFF 138


>gi|269792349|ref|YP_003317253.1| CMP/dCMP deaminase zinc-binding protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099984|gb|ACZ18971.1| CMP/dCMP deaminase zinc-binding protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 153

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 17/121 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEA-- 63
           FM  ALR +   +   + +  V  ++V +G+V+GRG       G P  HAE+ A+ +A  
Sbjct: 3   FMREALREAELAM--EAGDVPVGAVVVMNGLVVGRGRNVRELTGDPLGHAEMVAIRDACS 60

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                   GA+ YVTLEPC        CA  I++C I  V   + DP     G     L 
Sbjct: 61  ALGTWRLDGASLYVTLEPC------VMCAGAILQCRISEVHFALRDPKAGAVGSLYDVLR 114

Query: 121 Q 121
            
Sbjct: 115 D 115


>gi|325954716|ref|YP_004238376.1| CMP/dCMP deaminase zinc-binding protein [Weeksella virosa DSM
           16922]
 gi|323437334|gb|ADX67798.1| CMP/dCMP deaminase zinc-binding protein [Weeksella virosa DSM
           16922]
          Length = 146

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 56/145 (38%), Gaps = 18/145 (12%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  FM  AL+ ++  V        V  LIV    +I +      T      HAE+QA+  
Sbjct: 7   DEYFMRKALQEAQ--VAFDRDEIPVGALIVSQNKIIAKTHNLTETLTDVTAHAEMQAITS 64

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G+  +  T YVTLEPC        CA  +    I R+V+   D       + ++
Sbjct: 65  AANYLGGKYLKDCTLYVTLEPC------VMCAGALYWSQISRIVIGASDEKRGFRSQLVK 118

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYL 142
              +  I  + ++  E    +  + 
Sbjct: 119 LHPKTQI-TEGVLAKESTELIQKFF 142


>gi|332686456|ref|YP_004456230.1| tRNA-specific adenosine-34 deaminase [Melissococcus plutonius ATCC
           35311]
 gi|332370465|dbj|BAK21421.1| tRNA-specific adenosine-34 deaminase [Melissococcus plutonius ATCC
           35311]
          Length = 163

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 17/123 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM+ AL  ++    L      +  ++V    +I RG            HAE+ A+ EA
Sbjct: 10  KFFMNEALTEAKKAEKL--GEVPIGAVVVYQKQIIARGYNLREKIQKATAHAEILAINEA 67

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                         +VTLEPCS       C+  ++   I  V     DP    +G  +  
Sbjct: 68  CTFLNSWRLEETRLFVTLEPCSM------CSGAMLLARIPEVYYGAKDPKGGAAGTLINL 121

Query: 119 LSQ 121
           L+ 
Sbjct: 122 LAD 124


>gi|257064835|ref|YP_003144507.1| deoxycytidylate deaminase [Slackia heliotrinireducens DSM 20476]
 gi|256792488|gb|ACV23158.1| deoxycytidylate deaminase [Slackia heliotrinireducens DSM 20476]
          Length = 156

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 59/158 (37%), Gaps = 43/158 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D  FM  A   S+    L     +V  +IVKD  ++  G                   
Sbjct: 11  SWDEYFMHLAFEVSKRSTCLRR---AVGAVIVKDRRILATGYNGVPSGLRHCDETGCLRQ 67

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G +  G++ Y+T +PC        C + +I 
Sbjct: 68  QLNVPSGQRHEICRGLHAEQNAIIQAARYGIDIAGSSIYITTQPC------VVCTKMLIN 121

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
            GI  VV     PD       ++ LS+ GI+V R+  S
Sbjct: 122 AGITEVVYAEGYPD----ELAMEMLSETGIMVRRVEMS 155


>gi|226528904|ref|NP_001152082.1| tRNA-specific adenosine deaminase [Zea mays]
 gi|195624114|gb|ACG33887.1| tRNA-specific adenosine deaminase [Zea mays]
 gi|195652465|gb|ACG45700.1| tRNA-specific adenosine deaminase [Zea mays]
          Length = 183

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 49/131 (37%), Gaps = 26/131 (19%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE---- 61
           FM  AL  +++   L +    V C+IV+DG VI  G            HAE++A++    
Sbjct: 5   FMELALEQAKFA--LDNLEVPVGCVIVEDGKVISSGSNKTNATRNATRHAEMEAIDVLLR 62

Query: 62  ----------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
                     +  E+  G   YVT EPC        CA  +   GIR V     +     
Sbjct: 63  EWQSMGLDQPQVAEKFAGCDLYVTCEPCIM------CATALSIIGIREVYFGCANDKFGG 116

Query: 112 SGRGLQWLSQK 122
            G  +   +  
Sbjct: 117 CGSIMSLHNGA 127


>gi|218247490|ref|YP_002372861.1| CMP/dCMP deaminase [Cyanothece sp. PCC 8801]
 gi|257061174|ref|YP_003139062.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 8802]
 gi|218167968|gb|ACK66705.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 8801]
 gi|256591340|gb|ACV02227.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 8802]
          Length = 154

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 23/155 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV----TAYGGCPHAEVQALEE 62
             +M  AL  ++   G     P V  +IV   G ++        T      HAE+ A+ +
Sbjct: 8   RYWMEKALNQAKLA-GEIGEVP-VGAIIVDHQGNLLAETGNRKETNQDPTAHAEMLAIRQ 65

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +  +       T YVTLEPC      P C   +I+  +  +V   D+P        + 
Sbjct: 66  ASQRLQTWHLNNCTLYVTLEPC------PMCTGALIQSRLGLLVYGCDEPKSGTIRTVMN 119

Query: 118 WLSQKG-----IIVDRMMESEGKIFLHAYLTRQVE 147
                       ++  ++E E +  L  +   +  
Sbjct: 120 LPDSACSNHRLAVISGILEEECRQQLQQWFRERRH 154


>gi|161524475|ref|YP_001579487.1| CMP/dCMP deaminase zinc-binding [Burkholderia multivorans ATCC
           17616]
 gi|221215505|ref|ZP_03588469.1| tRNA-specific adenosine deaminase [Burkholderia multivorans CGD1]
 gi|160341904|gb|ABX14990.1| CMP/dCMP deaminase zinc-binding [Burkholderia multivorans ATCC
           17616]
 gi|221164689|gb|EED97171.1| tRNA-specific adenosine deaminase [Burkholderia multivorans CGD1]
          Length = 187

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 58/155 (37%), Gaps = 22/155 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEV 57
           P S+ D  FM      +       +    V  ++V+   V+ RG     G      HAE+
Sbjct: 20  PASARDVHFMRL--ALAAAEEARAAGEVPVGAVLVRGDEVLARGFNHPIGGHDPSAHAEM 77

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL  A +  +     G   YVTLEPC        CA  I+   I RVV    DP   V 
Sbjct: 78  AALRMAAQHLQNYRMPGCELYVTLEPCLM------CAGAIMHARIARVVFGAADPKTGVC 131

Query: 113 GRGLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
           G  +       L+    +V  ++  E    L ++ 
Sbjct: 132 GSVMDAFANPQLNHHTEVVGGVLAHECGAALKSFF 166


>gi|254281607|ref|ZP_04956575.1| tRNA-specific adenosine deaminase [gamma proteobacterium NOR51-B]
 gi|219677810|gb|EED34159.1| tRNA-specific adenosine deaminase [gamma proteobacterium NOR51-B]
          Length = 164

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 46/126 (36%), Gaps = 17/126 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
            S FD   MS AL   +  +        V  ++V DG V+        G      HAE+ 
Sbjct: 4   FSDFDREMMSLALE--KAAMAAAQGEVPVGAVVVMDGKVVATAGNGQIGDCDPTAHAEIL 61

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL +A    R     GAT Y TLEPC        C   ++   I R+V    +P      
Sbjct: 62  ALRDAARAIRNYRLAGATLYATLEPC------TMCCGALVHARIGRLVYGALEPKAGAVV 115

Query: 114 RGLQWL 119
                L
Sbjct: 116 STGAAL 121


>gi|220906017|ref|YP_002481328.1| CMP/dCMP deaminase [Cyanothece sp. PCC 7425]
 gi|219862628|gb|ACL42967.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 7425]
          Length = 161

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 15/112 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D R +  A+   R       T     C+I KDG +I  G            H E+ A+ +
Sbjct: 6   DERLIRRAIELGRRAALDLCTGGPFGCVIAKDGAIIAEGYNRVVAENDPTWHGEMAAIRQ 65

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           A ++ +     G   Y + EPC      P CA       + R+V      D 
Sbjct: 66  AAKQLQTFDLSGCVLYTSAEPC------PMCAAACWWARLDRIVYASRVEDA 111


>gi|313896633|ref|ZP_07830182.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320529093|ref|ZP_08030185.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Selenomonas artemidis F0399]
 gi|312974818|gb|EFR40284.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320138723|gb|EFW30613.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Selenomonas artemidis F0399]
          Length = 156

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 52/154 (33%), Gaps = 23/154 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHAEVQA 59
             D + M  AL  +     L      +  +++   G ++  G       +    HAE+ A
Sbjct: 2   PDDVKGMRLALAEAERAYAL--GEVPIGAVVMDGAGNIVSTGHNLRESEHDATAHAELIA 59

Query: 60  LEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           +  A          G T YVT+EPC      P CA  I+   I RVV    D        
Sbjct: 60  IRRACRALGRWRLTGMTLYVTIEPC------PMCAGAIVMSRISRVVYGAADSKAGACES 113

Query: 115 GLQW-----LSQKGIIVDRMMESEGKIFLHAYLT 143
                    L+ +  +  ++M  E    +  +  
Sbjct: 114 LFNIPGCMTLNHRPEVYGQVMADECHAIMRRFFN 147


>gi|148254187|ref|YP_001238772.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bradyrhizobium sp. BTAi1]
 gi|146406360|gb|ABQ34866.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bradyrhizobium sp. BTAi1]
          Length = 239

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 5/122 (4%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLL 279
           ++LD   K+              V+++TE          R + ++ I+      DL  +L
Sbjct: 83  VVLDAQGKICWGRA--DIGGDPIVVVLTEAVSDAHLAGLRSEGVSYIFAGRSQLDLAVVL 140

Query: 280 TILV-GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
            +L    GV  LL+EGG     +F+ + LVD   L     + G  G PS  +    E + 
Sbjct: 141 DVLARELGVKRLLLEGGGGANGAFLRAGLVDEFNLVLCPAIDGAKGAPSVFDSPESESDQ 200

Query: 339 MC 340
             
Sbjct: 201 RA 202


>gi|330933338|ref|XP_003304140.1| hypothetical protein PTT_16586 [Pyrenophora teres f. teres 0-1]
 gi|311319472|gb|EFQ87774.1| hypothetical protein PTT_16586 [Pyrenophora teres f. teres 0-1]
          Length = 293

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 26/162 (16%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
           ++   FM  A+  +   +    T   V C+ VKDG +IGRG+        G  HAE  A+
Sbjct: 66  AYHEGFMREAIAMAELALKSDET--PVGCVFVKDGHIIGRGMNETNRTLNGTRHAEFVAI 123

Query: 61  EEAGEEARG-------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
             AG  ++           YVT+EPC        CA  + + GIR V     +     +G
Sbjct: 124 --AGILSKHPISILNETDLYVTVEPC------VMCASMLRQYGIRAVYFGCWNERFGGTG 175

Query: 114 RGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRS 150
             L   S   +     +   +   E  + L  +  ++ EK  
Sbjct: 176 GVLNIHSDPSVDKPYPVTGGIFREEAIMLLRKFYVQENEKAP 217


>gi|188588285|ref|YP_001922596.1| tRNA-specific adenosine deaminase [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498566|gb|ACD51702.1| tRNA-specific adenosine deaminase [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 157

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 19/131 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M   S D  F+  A   ++  +  +     +  +IVKD IVI +      T      HAE
Sbjct: 1   MEEKSMD--FLDIAKEEAKKAM--SKGEVPIGAVIVKDNIVISKAHNLKETLKDATAHAE 56

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ EA +        G   YVTLEPC        C   II+  I ++ +   + D+  
Sbjct: 57  ILAIREASKFLDDWRLNGTEMYVTLEPC------TMCTSAIIQSRISKLHIGTFNKDMGA 110

Query: 112 SGRGLQWLSQK 122
            G  +  +  +
Sbjct: 111 CGSIINLIDDR 121


>gi|282880121|ref|ZP_06288841.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella timonensis CRIS 5C-B1]
 gi|281305994|gb|EFA98034.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella timonensis CRIS 5C-B1]
          Length = 151

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 52/147 (35%), Gaps = 17/147 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--TAYGG--CPHAEVQALEE 62
           D  FM  AL  +          P +  ++V  G +I R    T        HAE+ A+  
Sbjct: 10  DEYFMRKALIEA-QAAFDEGEIP-IGAVVVCKGQIISRAHNLTERLHDVTAHAEMLAITA 67

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A  +  G      T YVT+EPC      P CA       + RVV    D          +
Sbjct: 68  ATNQLGGKYLTDCTLYVTIEPC------PMCASACGWAQLSRVVFGASDDKRGFKRYAPK 121

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTR 144
            L  K  I + ++  +    +  +  +
Sbjct: 122 VLHPKAEITNGVLREDCMALMQLFFKK 148


>gi|91783891|ref|YP_559097.1| tRNA-adenosine deaminase [Burkholderia xenovorans LB400]
 gi|91687845|gb|ABE31045.1| tRNA-adenosine deaminase [Burkholderia xenovorans LB400]
          Length = 196

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 49/127 (38%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
            V  ++V+   VI +G     G      HAE+ AL  A +        G   YVTLEPC 
Sbjct: 44  PVGAVLVRGDEVIAKGFNHPIGAHDPSAHAEMVALRAAAQAVENYRLPGCELYVTLEPCL 103

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  CA  I+   I RVV    DP     G  +       L+    +   ++ESE  
Sbjct: 104 M------CAGAIMHARIARVVFGARDPKTGACGSVVDAFANPQLNHHTTVTGGVLESECG 157

Query: 136 IFLHAYL 142
             L A+ 
Sbjct: 158 AALKAFF 164


>gi|78188173|ref|YP_378511.1| cytosine deaminase, putative [Chlorobium chlorochromatii CaD3]
 gi|78170372|gb|ABB27468.1| tRNA-adenosine deaminase [Chlorobium chlorochromatii CaD3]
          Length = 153

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 23/148 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----TAYGGCPHAEVQALEEA- 63
           FMSAALR +            V  +++  +G +IGRG     T +    HAE+ AL  A 
Sbjct: 7   FMSAALREAIKAYEQRE--VPVGAVVLDSNGHIIGRGHNQVETLHDATAHAEMIALTAAM 64

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW- 118
                +     T  VT+EPC      P CA  I+   + RV+    D  +   G  L   
Sbjct: 65  ATLGNKYLDDCTLAVTMEPC------PMCAGAIVNAKVGRVIFGAYDSKMGACGTVLNIT 118

Query: 119 ----LSQKGIIVDRMMESEGKIFLHAYL 142
               L+ +  +   +ME + +  L ++ 
Sbjct: 119 GNRVLNHQPEVFGGIMEHKCQELLQSFF 146


>gi|296436400|gb|ADH18574.1| cytosine deaminase [Chlamydia trachomatis G/9768]
 gi|296438259|gb|ADH20420.1| cytosine deaminase [Chlamydia trachomatis G/11074]
 gi|297140760|gb|ADH97518.1| cytosine deaminase [Chlamydia trachomatis G/9301]
          Length = 163

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 42/124 (33%), Gaps = 17/124 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
             D  FM  AL  +R           V C+IV    +I RG  +         HAE+  +
Sbjct: 4   EKDLFFMKKALDEARKA--YEQDEVPVGCIIVHGDKIIARGHNSVEQLKDPTAHAEMICV 61

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A E       +    Y TLEPC        CA  I    I R+V    D  +   G  
Sbjct: 62  SAAAEYLENWRLKDTILYCTLEPCLM------CAGAIQLARIPRIVWGAPDLRLGAGGSW 115

Query: 116 LQWL 119
           L   
Sbjct: 116 LNVF 119


>gi|242041093|ref|XP_002467941.1| hypothetical protein SORBIDRAFT_01g036850 [Sorghum bicolor]
 gi|241921795|gb|EER94939.1| hypothetical protein SORBIDRAFT_01g036850 [Sorghum bicolor]
          Length = 183

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 48/129 (37%), Gaps = 26/129 (20%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE---- 61
           FM  AL  +++   L +    V C+IV+DG VI  G            HAE++A++    
Sbjct: 5   FMEQALEQAKFA--LDNLEVPVGCVIVEDGKVISSGSNKTNATRNATRHAEMEAIDVLLR 62

Query: 62  ----------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
                     +  E+  G   YVT EPC        CA  +   GIR V     +     
Sbjct: 63  EWQSMGLDQTQVAEKFAGCDLYVTCEPCIM------CATALSIIGIREVYFGCANDKFGG 116

Query: 112 SGRGLQWLS 120
            G  +    
Sbjct: 117 CGSIMSLHK 125


>gi|311106622|ref|YP_003979475.1| tRNA-specific adenosine deaminase [Achromobacter xylosoxidans A8]
 gi|310761311|gb|ADP16760.1| tRNA-specific adenosine deaminase [Achromobacter xylosoxidans A8]
          Length = 163

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 52/128 (40%), Gaps = 22/128 (17%)

Query: 2   PVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKD-GIVIGRGVTA----YGGCPH 54
           P ++ DA FM  AL+ ++    +G       V  L+V   G ++GRG       +    H
Sbjct: 6   PWTAQDASFMELALQEAQAAYDIGEV----PVGALVVSAQGDILGRGYNRTIIDHDPTAH 61

Query: 55  AEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AE+ AL  A          G T YVTLEPC        C   ++   + RVV    DP  
Sbjct: 62  AEIVALRGAARALENYRLPGITVYVTLEPC------VMCIGAMLHARLARVVFGAYDPKT 115

Query: 110 RVSGRGLQ 117
              G  L 
Sbjct: 116 GACGSVLD 123


>gi|304385470|ref|ZP_07367815.1| tRNA-specific adenosine deaminase [Pediococcus acidilactici DSM
           20284]
 gi|304328677|gb|EFL95898.1| tRNA-specific adenosine deaminase [Pediococcus acidilactici DSM
           20284]
          Length = 161

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 44/123 (35%), Gaps = 17/123 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
             +M  AL+ +++   +      +  ++V DG +IGRG      +     HAEV A+ EA
Sbjct: 10  QFYMGEALKEAQFAKMIDEV--PIGAVVVHDGKIIGRGHNLREHSQDATTHAEVLAITEA 67

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
               R         +VT+EPC     +      II   I  V     D            
Sbjct: 68  CAYLRSWRLWDCQLFVTIEPCLMCSGT------IINSQIPEVYFGARDSKAGAVRSLYTV 121

Query: 119 LSQ 121
           L  
Sbjct: 122 LED 124


>gi|188994253|ref|YP_001928505.1| putative cytidine/deoxycytidylate deaminase [Porphyromonas
           gingivalis ATCC 33277]
 gi|188593933|dbj|BAG32908.1| putative cytidine/deoxycytidylate deaminase [Porphyromonas
           gingivalis ATCC 33277]
          Length = 159

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 40/118 (33%), Gaps = 17/118 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           M  +  D   M  A+R +   V           +IVKDG +I               HAE
Sbjct: 1   MNHTEQDKEMMREAIRLADESVANGGG--PFGAVIVKDGEIIAATSNRVTLDNDPTAHAE 58

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           V  +  A +     +  G T Y + EPC      P C   I    I R+    +  D 
Sbjct: 59  VNCIRMACKRLGTFDLSGCTIYTSCEPC------PMCLGAIYWARIDRIFYGNNRQDA 110


>gi|86608124|ref|YP_476886.1| cytidine and deoxycytidylate deaminase family protein
           [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556666|gb|ABD01623.1| cytidine and deoxycytidylate deaminase family protein
           [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 171

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 59/152 (38%), Gaps = 23/152 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAY----GGCPHAEVQALEE 62
             +M  ALR +    G     P VA L+V  G  ++               HAE+ AL +
Sbjct: 17  RAWMQLALREAEQA-GEAGEVP-VAALVVGPGEKLLALSSNRRERDRDPTAHAEILALRQ 74

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AG+       +G   YVTLEPC      P CA  I +  + +V+   DDP        L 
Sbjct: 75  AGQRLGDWQLQGCRLYVTLEPC------PMCAGAISQSRLAQVIYGADDPKAGALRSVLN 128

Query: 118 WLSQKG-----IIVDRMMESEGKIFLHAYLTR 144
             +         ++  + E+E +  L  +  R
Sbjct: 129 LPASAASFHCPEVIGGVCEAECRRLLQQWFCR 160


>gi|150865735|ref|XP_001385070.2| cytosine deaminase [Scheffersomyces stipitis CBS 6054]
 gi|149386991|gb|ABN67041.2| cytosine deaminase [Scheffersomyces stipitis CBS 6054]
          Length = 150

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 61/157 (38%), Gaps = 21/157 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAE 56
           MP +  D + M  AL  ++         P    LI +DG V+GRG            H E
Sbjct: 1   MPFN--DKKGMQIALEEAKKG-YEEGGVPIGGALISEDGTVLGRGHNMRFQKDSAILHGE 57

Query: 57  VQALEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           +  LE AG       +  T Y TL PC        C+   +  GI+RVV+  +   V   
Sbjct: 58  MSVLENAGRLKGSVYKNCTMYTTLSPCHM------CSGACLMYGIKRVVLGENVNFVGAE 111

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
                 L  +G+ V  + + E K  +  ++  + E  
Sbjct: 112 ----ALLRSEGVEVVNLNDPECKALMKKFIDERPEDW 144


>gi|289422456|ref|ZP_06424299.1| tRNA-specific adenosine deaminase [Peptostreptococcus anaerobius
           653-L]
 gi|289157028|gb|EFD05650.1| tRNA-specific adenosine deaminase [Peptostreptococcus anaerobius
           653-L]
          Length = 154

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 44/116 (37%), Gaps = 17/116 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL  +R    L  T   +  +IV  G ++GRG            HAE+ A+ +A
Sbjct: 4   EYFMEQALVEARKAYALKET--PIGAVIVYQGRIVGRGFNQVELQNNPLAHAEIMAINDA 61

Query: 64  -GEEAR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
               AR        YVT+EPC        CA  I    IR + +        +  +
Sbjct: 62  VKNLARWRLYDCQMYVTMEPCFM------CAGAIANSRIRGLYIGAGHHKNHIVTK 111


>gi|89255310|ref|NP_660001.2| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
           [Rhizobium etli CFN 42]
 gi|218674568|ref|ZP_03524237.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
           [Rhizobium etli GR56]
 gi|89213264|gb|AAM55014.2| probable 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
           [Rhizobium etli CFN 42]
 gi|327191679|gb|EGE58686.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
           [Rhizobium etli CNPAF512]
          Length = 233

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 5/114 (4%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLL 279
           +I+D   +L  D           V++   + D        +  ++ I    D  DLK  L
Sbjct: 90  VIVDKDGRLRWDKS--DIEGAHLVVLTGSDVDDAYLAGLTQAGVSYIVSEKDGVDLKNAL 147

Query: 280 TILV-GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
            +L    GV  L++EGGA     F+ + LVD + L     + G+   P+  E G
Sbjct: 148 DLLGTEFGVKRLMLEGGAQTNGHFLKAGLVDEVSLVIFPAIGGKSNTPAIFEGG 201


>gi|294674240|ref|YP_003574856.1| guanine deaminase [Prevotella ruminicola 23]
 gi|294472550|gb|ADE81939.1| guanine deaminase [Prevotella ruminicola 23]
          Length = 158

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 44/121 (36%), Gaps = 25/121 (20%)

Query: 3   VSSFDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
           ++  D +FM  A+R +        G          +IVKDG +I     +         H
Sbjct: 2   ITEQDKKFMREAIRLANESVERGGG------PFGAVIVKDGEIIAGSSNSVTIDNDPTAH 55

Query: 55  AEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AEV  + +A  + R     G T Y + EPC      P C   I    I ++       D 
Sbjct: 56  AEVNTIRKACFKLRTFDLSGCTIYTSCEPC------PMCLGAIYWARIGKIFYGNTRKDA 109

Query: 110 R 110
           R
Sbjct: 110 R 110


>gi|222099239|ref|YP_002533807.1| Deoxycytidylate deaminase [Thermotoga neapolitana DSM 4359]
 gi|221571629|gb|ACM22441.1| Deoxycytidylate deaminase [Thermotoga neapolitana DSM 4359]
          Length = 199

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 52/135 (38%), Gaps = 39/135 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-------------- 50
           S+D+ FM  A   S      T  +  V  +IVKD  ++  G                   
Sbjct: 53  SWDSYFMRIARMVSERS---TCFHRKVGAVIVKDHRILATGYNQPPSKFPHCNEVGCIRD 109

Query: 51  ------GCP-------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                 G         HAE  AL +A   G    GAT YVT +PCS       CA+ ++ 
Sbjct: 110 DLGINSGEHQEICYALHAEQNALMQAAKFGIAVNGATIYVTHKPCSI------CARLLVN 163

Query: 95  CGIRRVVVCVDDPDV 109
            GI+RVV   D PD 
Sbjct: 164 AGIKRVVYEKDYPDP 178


>gi|327438138|dbj|BAK14503.1| cytosine/adenosine deaminase [Solibacillus silvestris StLB046]
          Length = 167

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 56/154 (36%), Gaps = 22/154 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
           + + D ++M  AL+              +  +IV    +I R      T      HAE  
Sbjct: 2   LENKDHQYMQEALK--EAKKAAALGEVPIGAVIVYKDEIIARAHNLRETTQNALTHAESM 59

Query: 59  ALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A++EA ++         T YVTLEPC      P CA  I++  I RVV    D       
Sbjct: 60  AIQEACKKVGSWRLEETTLYVTLEPC------PMCAGAILQSRIPRVVYGARDIKAGCVD 113

Query: 114 RGLQWLSQK-----GIIVDRMMESEGKIFLHAYL 142
              + L+         + + +M  E    L  + 
Sbjct: 114 SLYRLLNDARFNHECTVTEGVMAEECGQILTDFF 147


>gi|91215472|ref|ZP_01252443.1| putative cytosine/adenosine deaminase [Psychroflexus torquis ATCC
           700755]
 gi|91186424|gb|EAS72796.1| putative cytosine/adenosine deaminase [Psychroflexus torquis ATCC
           700755]
          Length = 149

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 55/146 (37%), Gaps = 18/146 (12%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
            D  FM  AL+ ++           V  ++  +  +I +             HAE+QA+ 
Sbjct: 6   DDHYFMKKALQEAQQA--FDKGEIPVGAVVTHNNQIIAKSHNLTEQLTDVTAHAEMQAIT 63

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A     G+  RG T YVTLEPC        CA  +    + R+V    D + R      
Sbjct: 64  AAANHIGGKYLRGCTLYVTLEPCQM------CAGALYWSQLSRLVFAAPD-EGRGYRTLG 116

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYL 142
             L  K  +   ++E E    L A+ 
Sbjct: 117 TQLHPKTKVDHGILEEEASRLLKAFF 142


>gi|238014692|gb|ACR38381.1| unknown [Zea mays]
          Length = 183

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 49/131 (37%), Gaps = 26/131 (19%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE---- 61
           FM  AL  +++   L +    V C+IV+DG VI  G            HAE++A++    
Sbjct: 5   FMELALEQAKFA--LDNLEVPVGCVIVEDGKVISSGSNKTNATRNATRHAEMEAIDVLLR 62

Query: 62  ----------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
                     +  E+  G   YVT EPC        CA  +   GIR V     +     
Sbjct: 63  EWQSMGLDQPQVAEKFAGCDLYVTCEPCIM------CATALSIIGIREVYFGCANDKFGG 116

Query: 112 SGRGLQWLSQK 122
            G  +   +  
Sbjct: 117 CGSIMSLHNGA 127


>gi|86134833|ref|ZP_01053415.1| Deoxycytidylate deaminase [Polaribacter sp. MED152]
 gi|85821696|gb|EAQ42843.1| Deoxycytidylate deaminase [Polaribacter sp. MED152]
          Length = 141

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 32/146 (21%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-----------YGGCP- 53
           +D  ++  AL    W          V  LIVKD ++I  G                G   
Sbjct: 9   YDKAYLRMALE---WGKLSHCKRKQVGALIVKDRMIISDGFNGTPTGFDNCCEDENGATK 65

Query: 54  ----HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               HAE  A+     + + A+ AT Y+TL PC+       C++ I + GI+RVV     
Sbjct: 66  WEVLHAEANAILKVASSTQSAKNATLYITLSPCTQ------CSKLIHQAGIKRVVYANAY 119

Query: 107 PDVRVSGRGLQWLSQKGIIVDRMMES 132
            D      GL +L + G+ +  +   
Sbjct: 120 KDP----SGLDFLKKAGVSLTYLPYE 141


>gi|310828329|ref|YP_003960686.1| alpha amylase catalytic region [Eubacterium limosum KIST612]
 gi|308740063|gb|ADO37723.1| alpha amylase catalytic region [Eubacterium limosum KIST612]
          Length = 630

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 24/157 (15%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
           ++  D   MS A+  +    G+      V  +I+ +G +I        T      HAE+ 
Sbjct: 483 MTMQDI--MSKAIEEAER--GIEEGEVPVGAVILHNGEIIAAAHNQKETLQDPTAHAEML 538

Query: 59  ALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            + EA ++           YVT EPC      P C   +I+  IR++V    +       
Sbjct: 539 VIREASKKLGRWRLDDCELYVTAEPC------PMCMGAVIQSRIRKLVYGTWETRFGGVE 592

Query: 114 RGLQ-----WLSQKGIIVDRMMESEGKIFLHAYLTRQ 145
              +      LS    I   + E + +  L  +    
Sbjct: 593 TTAELGKHPMLSNATEIYSGICEEKCQELLERFFQNN 629


>gi|126668408|ref|ZP_01739365.1| hypothetical protein MELB17_14743 [Marinobacter sp. ELB17]
 gi|126627117|gb|EAZ97757.1| hypothetical protein MELB17_14743 [Marinobacter sp. ELB17]
          Length = 167

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 43/122 (35%), Gaps = 17/122 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57
            V + D  +M+     +            V  ++V DG  +G G            HAE+
Sbjct: 7   TVLANDEYWMNR--ALALAAQAAALGEVPVGAVVVIDGQEVGAGFNKPISSCDPTAHAEI 64

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL +A          GAT YVTLEPC        C   I+   I RVV    +P     
Sbjct: 65  CALRQAATYLNNYRLSGATLYVTLEPC------TMCVGAIVHSRISRVVYGATEPKAGAV 118

Query: 113 GR 114
             
Sbjct: 119 ES 120


>gi|323136503|ref|ZP_08071585.1| CMP/dCMP deaminase, zinc-binding [Methylocystis sp. ATCC 49242]
 gi|322398577|gb|EFY01097.1| CMP/dCMP deaminase, zinc-binding [Methylocystis sp. ATCC 49242]
          Length = 189

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 42/112 (37%), Gaps = 21/112 (18%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57
           PV + D R+M  AL  +               +I K G V+  G  +         H E+
Sbjct: 41  PVRADDERYMRIALDEAARGDF------PFGAVIEKGGRVLATGHNSGKSTNDPTAHGEM 94

Query: 58  QALEE-----AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
            A+          E  GAT Y T EPC      P C   II CG RRVV   
Sbjct: 95  VAIRNFIKSHPSAELNGATIYTTGEPC------PMCMGAIIWCGFRRVVFAA 140


>gi|261407450|ref|YP_003243691.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus sp.
           Y412MC10]
 gi|261283913|gb|ACX65884.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus sp.
           Y412MC10]
          Length = 159

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 42/111 (37%), Gaps = 16/111 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  A+  +  +V      P    ++VKDG VIGRG            HAEVQA+ EA
Sbjct: 7   EYWMHQAIAEAHRNVQHVEGGP-FGAIVVKDGQVIGRGRNLVTALNDPTAHAEVQAIREA 65

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
                  + +G T Y + EPC      P C   I       V       D 
Sbjct: 66  CLHLEDFQLKGCTIYTSCEPC------PMCLGAIYWSRPDAVYYASTKQDA 110


>gi|242280630|ref|YP_002992759.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio salexigens DSM 2638]
 gi|242123524|gb|ACS81220.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio salexigens DSM 2638]
          Length = 145

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 24/142 (16%)

Query: 7   DARFMSAALRFSRWHV---GLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQA 59
           D  FM  A + ++      GL      +  ++V+DG +IG G       G P  H E+  
Sbjct: 3   DMEFMEEAYKLAKKSFDQGGL-----PIGSVLVRDGKIIGSGHNQRVQKGDPIAHGEMDC 57

Query: 60  LEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           +  AG +   +  T Y TL PC     +      I++ GI RVV+  +    R  G   +
Sbjct: 58  IRNAGRQKTYKDTTIYTTLSPCMMCSGT------IVQFGISRVVIGEN----RNFGGNEE 107

Query: 118 WLSQKGIIVDRMMESEGKIFLH 139
           +L  +G+ VD +   +    + 
Sbjct: 108 FLESRGVQVDILDHPKCIELME 129


>gi|51891149|ref|YP_073840.1| putative Cu-binding protein [Symbiobacterium thermophilum IAM
           14863]
 gi|51854838|dbj|BAD38996.1| putative Cu-binding protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 152

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            +  +IV+D  ++ R      T +    HAEV A+ EAG         G T YVT+EPC 
Sbjct: 24  PIGAVIVRDSEILVRTHNLRETTHDATAHAEVLAIREAGRLLGGWRLTGCTLYVTIEPC- 82

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGK 135
                P CA  +++  I RVV    DP        L++L   G+     + D ++     
Sbjct: 83  -----PMCAGALLQSRIDRVVFGARDPKAWADRSILEFLQNPGLNHRVEVRDGVLAEACS 137

Query: 136 IFLHAYL 142
             +  + 
Sbjct: 138 EVIRQFF 144


>gi|159902662|ref|YP_001550006.1| RibD/RibG domain-containing protein [Prochlorococcus marinus str.
           MIT 9211]
 gi|159887838|gb|ABX08052.1| RibD/ribG C-terminal domain [Prochlorococcus marinus str. MIT 9211]
          Length = 217

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 88/222 (39%), Gaps = 23/222 (10%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD-------D 204
           + L +A+S D  IG +      I G   ++ +    A SDA L+G GT+ A        +
Sbjct: 1   MKLVLAISLDGRIGFSDKPGQHIGGKGDRDVLEQALAWSDATLMGAGTLRAHKNTCLIKN 60

Query: 205 PEL-TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
           P+L   R    +   P+ I++                +     ++T     +  L     
Sbjct: 61  PKLIKQRSFNRKGAQPICIVVSKEANFIPQWPFFDQPIRR--WLLTRK--RIETLDICSA 116

Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE- 322
               I     +L + L  L  +G++ +++ GG  +  SF+    ++ + +     V+G  
Sbjct: 117 LFENILEFDNNLTETLATLKKKGLSKIVLLGGPDLVESFLIEDKINELQITIIPKVLGGE 176

Query: 323 ------GGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLEYIGK 357
                   +P+ L +     +++  + +Y  G+++ L+YI  
Sbjct: 177 KLWVNSNNLPNNLTK---SNSWILKKTEYLEGNELMLQYIRN 215


>gi|255325111|ref|ZP_05366217.1| riboflavin biosynthesis protein RibD domain protein
           [Corynebacterium tuberculostearicum SK141]
 gi|255297676|gb|EET76987.1| riboflavin biosynthesis protein RibD domain protein
           [Corynebacterium tuberculostearicum SK141]
          Length = 228

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 64/179 (35%), Gaps = 12/179 (6%)

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR  +D +LVG  TV A+D     + NG         +        + +         P
Sbjct: 49  ALRNWADVVLVGAQTVRAEDYS-GVQPNGDGSRPAPIAVPSRSLDFDITADFFTDFTTPP 107

Query: 245 VIIV--TENDDPVLAL---AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           +I++  +  D+  L             +       ++  +++L  RG   +L EGG  + 
Sbjct: 108 IILIPHSSRDNQELIKRIATIESTGAEVCDAGEGTVQDYISVLKDRGFKRVLCEGGPGMI 167

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD----VCLEY 354
              ++   +D + L     +    G+ +P+     E +   ++ +    D    V L Y
Sbjct: 168 GQLVDIDAIDQMYLTLDPHL--STGVETPMATFKGEHSHRRMQLENVADDKDGTVFLRY 224


>gi|311739573|ref|ZP_07713408.1| riboflavin biosynthesis protein RibD [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305389|gb|EFQ81457.1| riboflavin biosynthesis protein RibD [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 228

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 64/179 (35%), Gaps = 12/179 (6%)

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
            LR  +D +LVG  TV A+D     + NG         +        + +         P
Sbjct: 49  ALRNWADVVLVGAQTVRAEDYS-GVKPNGDGSRPAPIAVPSRSLDFDITADFFTDFTTPP 107

Query: 245 VIIV--TENDDPVLAL---AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           +I++  +  D+  L             +       ++  +++L  RG   +L EGG  + 
Sbjct: 108 IILIPHSSRDNQELIKRIATIESTGAEVCDAGEGTVQDYISVLKDRGFKRVLCEGGPGMI 167

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD----VCLEY 354
              ++   +D + L     +    G+ +P+     E +   ++ +    D    V L Y
Sbjct: 168 GQLVDIDAIDQMYLTLDPHL--STGVETPMATFKGEHSHRRMQLENVADDKDGTVFLRY 224


>gi|315647606|ref|ZP_07900708.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus vortex V453]
 gi|315277045|gb|EFU40386.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus vortex V453]
          Length = 159

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 42/111 (37%), Gaps = 16/111 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  A+  +  +V      P    ++VK+G VIGRG            HAEVQA+ EA
Sbjct: 7   EYWMQIAIEEAHQNVQNVEGGP-FGAIVVKEGKVIGRGRNLVTALNDPTAHAEVQAIREA 65

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
                  + +G T Y + EPC      P C   I       V       + 
Sbjct: 66  CLHMEDFQLKGCTIYTSCEPC------PMCLGAIYWSRPDAVYYASTKKEA 110


>gi|330718918|ref|ZP_08313518.1| cytosine/adenosine deaminase [Leuconostoc fallax KCTC 3537]
          Length = 169

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 52/153 (33%), Gaps = 25/153 (16%)

Query: 7   DAR---FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
           D +   FM AAL  +R   G     P +  +IV D  +I R             HAE+ A
Sbjct: 9   DEQINDFMQAALDEARQA-GSEGEVP-IGAVIVHDNQIIARAHNHREQGQQATAHAELLA 66

Query: 60  LEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           +E A + A          +VTLEPC        CA  II   I  +     D        
Sbjct: 67  IEAANQAAQSWRLENTALFVTLEPCMM------CAGAIINSRIPVIYYGAQDAKGGAVKS 120

Query: 115 GL-----QWLSQKGIIVDRMMESEGKIFLHAYL 142
                  + L+ +  +   +   E    L  + 
Sbjct: 121 LYTLLEDERLNHRVEVHPGIKSDECGQLLQNFF 153


>gi|269216548|ref|ZP_06160402.1| tRNA-specific adenosine deaminase [Slackia exigua ATCC 700122]
 gi|269130077|gb|EEZ61159.1| tRNA-specific adenosine deaminase [Slackia exigua ATCC 700122]
          Length = 212

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 42/126 (33%), Gaps = 17/126 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
             D  FM  A   +R           +  ++V DG V+ R             HAE  A+
Sbjct: 55  EKDESFMREAYAEARRA--FEEGEVPIGAVVVCDGRVVARAHNRREADRDPSGHAEFSAM 112

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A +        G T YVT+EPC        CA  + +  I R V    DP     G  
Sbjct: 113 RAAAQALGRWRLSGCTVYVTVEPCIM------CAGLMHQARIDRCVWGAPDPKAGALGSL 166

Query: 116 LQWLSQ 121
               + 
Sbjct: 167 YAIHAD 172


>gi|325001919|ref|ZP_08123031.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase ribd
           [Pseudonocardia sp. P1]
          Length = 130

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 4/124 (3%)

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
               + AP+++ T +       A      ++          LL  L  RG+  +L EGG 
Sbjct: 2   FTDTVTAPIVLTTADAPAHRRAALSAAGADVAVLPDLAPATLLAELGRRGLHDVLCEGGP 61

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
            +  + + +  VD + L    +++G         P+            R+   G+ + L 
Sbjct: 62  TLLGALVAADAVDELRLTLVPVLVGGPAGRIASGPVAGPARSLRPAGSRQADDGT-LLLH 120

Query: 354 YIGK 357
           YI +
Sbjct: 121 YIRE 124


>gi|270159339|ref|ZP_06187995.1| cytosine deaminase [Legionella longbeachae D-4968]
 gi|289165841|ref|YP_003455979.1| Cytosine deaminase (Cytosine aminohydrolase) [Legionella
           longbeachae NSW150]
 gi|269987678|gb|EEZ93933.1| cytosine deaminase [Legionella longbeachae D-4968]
 gi|288859014|emb|CBJ12942.1| Cytosine deaminase (Cytosine aminohydrolase) [Legionella
           longbeachae NSW150]
          Length = 149

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 22/157 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAE 56
           M VS    R++  A+  +R  V        +  ++V    +IGRG       G    H E
Sbjct: 1   MSVSHL--RYLDTAIEEARRSVAQGG--IPIGAVLVYKDRIIGRGHNQRVQKGSTILHGE 56

Query: 57  VQALEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           + A+E AG +       +  Y TL PC+       C+  I+   I  VV+  +   +   
Sbjct: 57  MDAIENAGRQKAKVYEQSILYTTLSPCAM------CSGAILLYKIPYVVIGENQTFMGEE 110

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
                 L  +G+ ++ +   E    +  ++T+  +  
Sbjct: 111 T----LLKSRGVKLEVLQNDECITMMRDFITQNSKLW 143


>gi|134297898|ref|YP_001111394.1| CMP/dCMP deaminase [Desulfotomaculum reducens MI-1]
 gi|134050598|gb|ABO48569.1| tRNA-adenosine deaminase [Desulfotomaculum reducens MI-1]
          Length = 151

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 22/147 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           FM  AL  ++           +  ++V    VIGRG            HAE+ A+ +A +
Sbjct: 6   FMREALIEAQKAA--VKGEVPIGAVVVWKDEVIGRGYDLRESLCDASAHAEILAMRKAAK 63

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                    AT YVT+EPC+       CA  I++  I R+V    +         L  + 
Sbjct: 64  HLGDWRLNDATLYVTVEPCAM------CAGAIVQFRINRLVYGAPNAKSGSVDTILNIVQ 117

Query: 121 QKGI-----IVDRMMESEGKIFLHAYL 142
           +        ++  ++E + K  +  + 
Sbjct: 118 EARFNHRVEVIAGILEDQCKEIIQNFF 144


>gi|86143339|ref|ZP_01061741.1| guanine deaminase [Leeuwenhoekiella blandensis MED217]
 gi|85830244|gb|EAQ48704.1| guanine deaminase [Leeuwenhoekiella blandensis MED217]
          Length = 156

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 41/113 (36%), Gaps = 16/113 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             +M  A+  +   +      P   C+IVKDG +IG+G            HAEV A+ +A
Sbjct: 4   KHYMQEAVTAALKGMQNNEGGP-FGCVIVKDGKIIGKGNNKVTSTNDPTAHAEVTAIRDA 62

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
            +     +  G   Y + EPC      P C   I      +V       D   
Sbjct: 63  CKNLGSFQLEGCILYTSCEPC------PMCLGAIYWARPEKVYYGSTKTDAAH 109


>gi|260592642|ref|ZP_05858100.1| tRNA-specific adenosine deaminase [Prevotella veroralis F0319]
 gi|260535412|gb|EEX18029.1| tRNA-specific adenosine deaminase [Prevotella veroralis F0319]
          Length = 150

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 52/146 (35%), Gaps = 17/146 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  FM  A+  +          P +  ++V    +I R      T      HAE+QA+  
Sbjct: 10  DMYFMQRAIDEA-KAAYREGEIP-IGAVVVCRDRIIARAHNLTETLNDVTAHAEMQAITI 67

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G+  +  T YVT+EPC        CA  I    + R+V    D          +
Sbjct: 68  AESELGGKYLQDCTLYVTVEPCIM------CAGAIGWAQLHRIVYGCPDIKRGYHEYAPK 121

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLT 143
               K  +   ++E E K  +  +  
Sbjct: 122 AFHPKANVTSGVLEEECKALMQRFFQ 147


>gi|315923999|ref|ZP_07920227.1| deoxycytidylate deaminase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622839|gb|EFV02792.1| deoxycytidylate deaminase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 165

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 64/160 (40%), Gaps = 34/160 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-------------TAYG 50
           S+D  FM  AL  ++           V   IV  +  ++  G               A  
Sbjct: 14  SWDQYFMGIALLSAQRSK---DPGTQVGACIVSPENKILSMGYNGMPIGCSDDEMPWARE 70

Query: 51  GCP---------HAEVQALEEAGEE-ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           G P         HAE  A+  +G +  +GAT YVTL PC+       C + II+CGI++V
Sbjct: 71  GDPLDTKYLYVCHAEFNAILNSGAKTLQGATLYVTLFPCNE------CTKAIIQCGIKKV 124

Query: 101 VVCVD-DPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
           V   D  PD        + ++  G++  R  E    I LH
Sbjct: 125 VYMEDKYPDSDAVIAAKRMMNMTGVVYQRYNEPHRDITLH 164


>gi|229070516|ref|ZP_04203757.1| Cytosine deaminase [Bacillus cereus F65185]
 gi|228712598|gb|EEL64532.1| Cytosine deaminase [Bacillus cereus F65185]
          Length = 169

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 46/115 (40%), Gaps = 22/115 (19%)

Query: 5   SFDARFMSAALRFSRWHVG-LTSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHAEVQ 58
             D  F+  AL  +   +   T     V  +IV  +  VI RG            HAE+ 
Sbjct: 4   ERDRYFLEMALEEAEKALKENTYP---VGAVIVDGNNNVIARGRNRVHPQKDITAHAEID 60

Query: 59  ALEEAGEEARGA-------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           A+  AGE    A       T Y TLEPC      P C   I+   I+RVV  ++D
Sbjct: 61  AIRNAGEAMFDAKIKNEKFTIYSTLEPC------PMCTGGILFAKIQRVVWLLND 109


>gi|209964980|ref|YP_002297895.1| guanine deaminase [Rhodospirillum centenum SW]
 gi|209958446|gb|ACI99082.1| guanine deaminase [Rhodospirillum centenum SW]
          Length = 158

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 16/110 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           + + DA F+  A   +R  +   +  P    +IV DG V+G G            HAE+ 
Sbjct: 1   MQAQDALFLRRAAELARHGMDAGAGGP-FGAVIVLDGTVVGEGWNRVTSSNDPTAHAEIV 59

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           A+ EA       + RGAT Y + EPC      P C   I    + R+V  
Sbjct: 60  AIREACARLGRFDLRGATVYSSCEPC------PMCLAAIHWARLDRLVYA 103


>gi|296160206|ref|ZP_06843025.1| CMP/dCMP deaminase zinc-binding [Burkholderia sp. Ch1-1]
 gi|295889680|gb|EFG69479.1| CMP/dCMP deaminase zinc-binding [Burkholderia sp. Ch1-1]
          Length = 238

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 57/154 (37%), Gaps = 22/154 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQ 58
           VS  D RFM+     +            V  ++V+   VI +G     G      HAE+ 
Sbjct: 65  VSERDRRFMAL--AQAAAEEARAVGEVPVGAVLVRGDEVIAKGFNHPIGAHDPSAHAEMV 122

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL  A +        G   YVTLEPC        CA  I+   I RVV    DP     G
Sbjct: 123 ALRAAAQAVENYRLPGCELYVTLEPCLM------CAGAIMHARIARVVFGARDPKTGACG 176

Query: 114 RGLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
             +       L+    +   ++ESE    L ++ 
Sbjct: 177 SVVDAFANPQLNHHTSVTGGVLESECGAALKSFF 210


>gi|228472740|ref|ZP_04057498.1| cytidine/deoxycytidylate deaminase family protein [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228275791|gb|EEK14557.1| cytidine/deoxycytidylate deaminase family protein [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 150

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 58/148 (39%), Gaps = 38/148 (25%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
           +D  +M  A  +++           V  +IVKD ++I  G     G P            
Sbjct: 11  YDRAYMRMAQEWAKLSYSQRK---QVGAIIVKDRMIISDGY---NGTPTGFDNCCEDAQG 64

Query: 54  -------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A+     + +   GAT Y+T+ PC        C++ I + GI RVV  
Sbjct: 65  DTLWYVLHAEANAILKVAASTQSCAGATLYITMSPCRE------CSKLIHQAGIVRVVY- 117

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMME 131
               D      G+++L + G+ +  + E
Sbjct: 118 ---KDSYRDTSGIEFLEKAGVEILHLPE 142


>gi|222445686|ref|ZP_03608201.1| hypothetical protein METSMIALI_01327 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435251|gb|EEE42416.1| hypothetical protein METSMIALI_01327 [Methanobrevibacter smithii
           DSM 2375]
          Length = 158

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 65/164 (39%), Gaps = 20/164 (12%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP--HAEVQALE 61
            D  F++ AL  ++    L      +  ++VKDG +I RG            HAE+  +E
Sbjct: 3   DDTYFINEALNEAKKS--LAEGGIPIGAVLVKDGKIISRGHNRLIQNDSVILHAEIDTIE 60

Query: 62  EAG----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            AG    E+   +  Y TL PC      P C+  I+   I +VV+  +   +        
Sbjct: 61  NAGRLNHEDYLQSVLYTTLSPC------PMCSGAILLYNIPKVVIGENTTLMGAEC---- 110

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
            L + G+ V  +   E K     Y+    E  ++   K+  S D
Sbjct: 111 LLEKNGVEVVVLNNLECKKLFEKYVEENPESWNNELSKVGNSTD 154


>gi|298491580|ref|YP_003721757.1| CMP/dCMP deaminase zinc-binding protein ['Nostoc azollae' 0708]
 gi|298233498|gb|ADI64634.1| CMP/dCMP deaminase zinc-binding protein ['Nostoc azollae' 0708]
          Length = 165

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 45/121 (37%), Gaps = 18/121 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEE 62
            ++M+ AL  +    G     P V  +IV     +I  G            HAE+ A+  
Sbjct: 18  QKWMNHALELA-QVAGDAGEVP-VGAVIVDAADNLIATGENRKERDQDPTGHAEIMAIRA 75

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +  +       T YVTLEPC      P CA  I+   +  +V  VDD         + 
Sbjct: 76  ASQSLQNWRLDKYTLYVTLEPC------PMCAGAIVHARLATLVYGVDDTKTGAIRTVIN 129

Query: 118 W 118
            
Sbjct: 130 I 130


>gi|163782336|ref|ZP_02177334.1| hypothetical protein HG1285_06100 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882369|gb|EDP75875.1| hypothetical protein HG1285_06100 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 147

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 49/153 (32%), Gaps = 21/153 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
             F+  AL+ +     L      V C++VK G V+ R             HAE+ AL EA
Sbjct: 3   EVFLKEALKEAERAYAL--GEVPVGCVVVKGGNVLARAHNRTEELKDASAHAELLALREA 60

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            +        G   YVTLEPC        CA  +I   + RVV    D            
Sbjct: 61  AKVLGDWRLEGCELYVTLEPC------VMCAYALILFRVDRVVFGTPDRKHGGVMSLYSL 114

Query: 119 LSQ----KGIIVDRMMESEGKIFLHAYLTRQVE 147
           L        +        E    L  +   +  
Sbjct: 115 LDDERFNHRVKWVYEPCEECGRLLREFFKERRC 147


>gi|325110159|ref|YP_004271227.1| CMP/dCMP deaminase zinc-binding protein [Planctomyces brasiliensis
           DSM 5305]
 gi|324970427|gb|ADY61205.1| CMP/dCMP deaminase zinc-binding protein [Planctomyces brasiliensis
           DSM 5305]
          Length = 154

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 44/141 (31%), Gaps = 20/141 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG--IVIGRGVTAY--GGCPHAE 56
           M  +  DAR M  A+  +  +            +I + G   ++  G          H E
Sbjct: 1   MISAEIDARIMRRAIELAEHNRQF-----PFGAVITQSGSETILAEGWNRGSENPTWHGE 55

Query: 57  VQAL-----EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+      E   +    T Y T EPC      P C   I   GI RVV     P +  
Sbjct: 56  IVAINDFFSREQQPDTESLTLYTTAEPC------PMCQSAIHWAGIDRVVYGTSIPTLIS 109

Query: 112 SGRGLQWLSQKGIIVDRMMES 132
            G     L    I      + 
Sbjct: 110 LGFQQISLRASDIQCRAPFQE 130


>gi|325297264|ref|YP_004257181.1| CMP/dCMP deaminase zinc-binding protein [Bacteroides salanitronis
           DSM 18170]
 gi|324316817|gb|ADY34708.1| CMP/dCMP deaminase zinc-binding protein [Bacteroides salanitronis
           DSM 18170]
          Length = 144

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 53/147 (36%), Gaps = 32/147 (21%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC------------- 52
            D R+M  A  ++            V  LIVKD ++I  G                    
Sbjct: 11  LDKRYMRMATIWAENSYCTRRK---VGALIVKDKMIISDGYNGTPAGFENVCEDENGLTK 67

Query: 53  ---PHAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               HAE  A   +  +   + GAT YVT  PC        CA+ II+ GI+RVV     
Sbjct: 68  PYVLHAEANAITKIARSNNSSEGATLYVTASPCIE------CAKLIIQAGIKRVVYAEKY 121

Query: 107 PDVRVSGRGLQWLSQKGIIVDRMMESE 133
                   GL  L +  I V  +  +E
Sbjct: 122 RL----EDGLDLLKRANIEVAFLNLNE 144


>gi|148643446|ref|YP_001273959.1| cytosine deaminase [Methanobrevibacter smithii ATCC 35061]
 gi|261349766|ref|ZP_05975183.1| cytosine deaminase [Methanobrevibacter smithii DSM 2374]
 gi|148552463|gb|ABQ87591.1| cytosine deaminase [Methanobrevibacter smithii ATCC 35061]
 gi|288860550|gb|EFC92848.1| cytosine deaminase [Methanobrevibacter smithii DSM 2374]
          Length = 158

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 20/164 (12%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP--HAEVQALE 61
            D  F++ AL+ ++    L      +  ++VKDG +I RG            HAE+  +E
Sbjct: 3   DDTYFINEALKEAKKS--LAEGGIPIGAVLVKDGKIISRGHNRLIQNDSVILHAEIDTIE 60

Query: 62  EAG----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            AG    E+   +  Y TL PC      P C+  I+   I +V++  +   +        
Sbjct: 61  NAGRLNHEDYLQSVLYTTLSPC------PMCSGAILLYNIPKVIIGENTTLMGAEC---- 110

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
            L + G+ V  +   E K     Y+    E  ++   K+  S D
Sbjct: 111 LLEKNGVEVVVLNNLECKKLFEKYVEENPESWNNELSKVGNSTD 154


>gi|312891108|ref|ZP_07750631.1| CMP/dCMP deaminase zinc-binding [Mucilaginibacter paludis DSM
           18603]
 gi|311296416|gb|EFQ73562.1| CMP/dCMP deaminase zinc-binding [Mucilaginibacter paludis DSM
           18603]
          Length = 159

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 60/153 (39%), Gaps = 17/153 (11%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           +P  S D  FM  AL+ +R    L      +  L+V  G +IGRG            HAE
Sbjct: 10  IPAISPDDFFMKEALKEARLA--LAEDEIPIGALVVCKGQIIGRGHNLTERLNDVSAHAE 67

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +QAL  A     G+     T YVT+EPC        CA       + ++V    D  +  
Sbjct: 68  MQALTAATNYTGGKYLPDCTLYVTMEPC------VMCAGASYWFQVGKIVFGAYDTRLGF 121

Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
                +    K +I   +ME+E    +  +  +
Sbjct: 122 GRLNQKITHPKTLITGGIMENECSELVREFFRK 154


>gi|30021149|ref|NP_832780.1| cytosine deaminase [Bacillus cereus ATCC 14579]
 gi|29896702|gb|AAP09981.1| Cytosine deaminase [Bacillus cereus ATCC 14579]
          Length = 169

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 61/177 (34%), Gaps = 27/177 (15%)

Query: 1   MPVSSFDARFMSAALRFSRWHVG-LTSTNPSVACLIVK-DGIVIGRGVT----AYGGCPH 54
           M     D  F+  AL  +   +   T     V  +IV  +  VI RG            H
Sbjct: 1   MNF-ERDRYFLQMALEEAEKALKENTYP---VGAVIVDGNNNVIARGRNRVHPEKDITAH 56

Query: 55  AEVQALEEAGEEARGA-------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           AE+ A+  AGE    A       T Y TLEPC      P C   I+   I+RVV  ++D 
Sbjct: 57  AELDAIRNAGEAMFDAKIKNERFTIYSTLEPC------PMCTGGILFAKIQRVVWLLNDD 110

Query: 108 DV-RVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL---TRQVEKRSHITLKIAVSQ 160
                  +    L  +G      M  E    L        RQ E   +  + +  + 
Sbjct: 111 LGFGGYKKIKNALVFEGKFNKIDMVEEPFEDLKTRQRELMRQWELNPNNIINLRRAI 167


>gi|317122494|ref|YP_004102497.1| CMP/dCMP deaminase zinc-binding protein [Thermaerobacter
           marianensis DSM 12885]
 gi|315592474|gb|ADU51770.1| CMP/dCMP deaminase zinc-binding protein [Thermaerobacter
           marianensis DSM 12885]
          Length = 171

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 35/142 (24%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP---------- 53
           S+DA FM  A   ++     T     V  ++V+D  ++  G   A  G P          
Sbjct: 24  SWDAYFMELAEVVAKRS---TCPRRHVGAVLVRDRRILATGYNGAPPGFPHCTDEGCLMQ 80

Query: 54  --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  A+ +A   G   RG+T Y T  PC H      CA+ +I  G+ RVV 
Sbjct: 81  DGHCVRTIHAEANAILQAALHGVTVRGSTLYTTATPCLH------CAKLLIGAGVVRVVY 134

Query: 103 CVDDPDVRVSGRGLQWLSQKGI 124
               PD +     +++L + GI
Sbjct: 135 RDWYPDPQA----VEFLRRAGI 152


>gi|158522912|ref|YP_001530782.1| CMP/dCMP deaminase zinc-binding [Desulfococcus oleovorans Hxd3]
 gi|158511738|gb|ABW68705.1| CMP/dCMP deaminase zinc-binding [Desulfococcus oleovorans Hxd3]
          Length = 157

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 17/118 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           +   DA FM  A+  +R  +      P    ++V+DG ++G G            H E+ 
Sbjct: 1   MEMHDA-FMRRAIELARAGMKAGDGGP-FGAVVVRDGQIVGEGANRVLAHNDPTAHGEIV 58

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           A+ +A +     +  G   Y T +PC      P C   I    I+ V       D   
Sbjct: 59  AIRDAAKRLGTYDLDGCVLYTTGQPC------PMCLGAIYWAHIQTVYFGFSIVDAGT 110


>gi|156846788|ref|XP_001646280.1| hypothetical protein Kpol_1032p14 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116955|gb|EDO18422.1| hypothetical protein Kpol_1032p14 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 612

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 12/143 (8%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEE---- 62
            ++M  AL  ++     T T  SV  ++     V+  G +    G  HAE  ALE+    
Sbjct: 464 KKYMELALEEAKK-CPPTKTAFSVGAILANGTEVLSTGYSRELEGNTHAEQCALEKYFTK 522

Query: 63  --AGEEARGATAYVTLEPCSHY-GRSPPCAQFIIECG--IRRVVVCVDDPDVRVSGR-GL 116
               E   G+  Y T+EPCS+    + PC + I++    I  V V V +PD  V      
Sbjct: 523 IGKREVPLGSVLYTTMEPCSYRLSGNKPCLERILDAKGRIGSVFVGVLEPDTFVKNNVSF 582

Query: 117 QWLSQKGIIVDRMMESEGKIFLH 139
             L+  GI   ++   E +    
Sbjct: 583 DTLTSNGIDYIQIPGYEEECINA 605


>gi|145229091|ref|XP_001388854.1| cytosine deaminase [Aspergillus niger CBS 513.88]
 gi|134054953|emb|CAK36962.1| unnamed protein product [Aspergillus niger]
          Length = 148

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 61/145 (42%), Gaps = 19/145 (13%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQALEEAGEEA- 67
           AA+  ++         P  ACL+ KDG ++GRG       G P  HAE+ ALE +G    
Sbjct: 9   AAVEEAKQGAAEGGV-PIGACLVSKDGKILGRGHNMRVQKGSPVLHAEMSALENSGRLPA 67

Query: 68  ---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
               GAT Y TL PC        C    I   ++RVVV  +   +        +L  +G 
Sbjct: 68  SAYEGATMYTTLSPCDM------CTGACILYKVKRVVVGENKSFMGGE----DYLKSRGK 117

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKR 149
            V  +  +E K  +  ++  + E  
Sbjct: 118 EVVVLDNAECKQLMEKFMKEKPELW 142


>gi|311067822|ref|YP_003972745.1| guanine deaminase [Bacillus atrophaeus 1942]
 gi|310868339|gb|ADP31814.1| guanine deaminase [Bacillus atrophaeus 1942]
          Length = 156

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 41/114 (35%), Gaps = 16/114 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64
            F+  A+  +   V      P    +IVKDG +I  G     T+     HAEV A+  A 
Sbjct: 5   EFLQRAVELATEGVNAGIGGP-FGAVIVKDGKIIAEGQNNVTTSNDPTAHAEVTAIRNAC 63

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           E     +      Y + EPC      P C   I     + V    +  D   +G
Sbjct: 64  EALGSYQLDDCILYTSCEPC------PMCLGAIYWARPKAVYYASEHTDAANAG 111


>gi|254473540|ref|ZP_05086936.1| cytosine deaminase [Pseudovibrio sp. JE062]
 gi|211957252|gb|EEA92456.1| cytosine deaminase [Pseudovibrio sp. JE062]
          Length = 148

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 54/148 (36%), Gaps = 22/148 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           FM  AL  +R           + C++VKDG V+               HAEV A+ EAG+
Sbjct: 5   FMDMALNEARAAEAR--GEVPIGCVVVKDGKVLSAAGNRTLELNDPTAHAEVLAIREAGK 62

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-- 118
                   G   YVTLEPC      P CA  I    IRR+     D        G+++  
Sbjct: 63  QLNSQRLEGCDLYVTLEPC------PMCAAAISFARIRRLYYGAGDAKGGGVDHGVRFYS 116

Query: 119 ---LSQKGIIVDRMMESEGKIFLHAYLT 143
                    +   + E++    L  +  
Sbjct: 117 SPTCHHTPDVYSGLAETDSAAMLKTFFQ 144


>gi|146179283|ref|XP_001470903.1| conserved hypothetical protein [Tetrahymena thermophila]
 gi|146144561|gb|EDK31523.1| conserved hypothetical protein [Tetrahymena thermophila SB210]
          Length = 160

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 55/149 (36%), Gaps = 16/149 (10%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
           M   +    F+  A++ +   V      P   C+IV+DG +I R        Y    HAE
Sbjct: 1   MEQMNDHQYFIQEAIKEAELAVITGDGEP-FGCVIVRDGKIIVRAHNRLYIDYDPTAHAE 59

Query: 57  VQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
             A+  A ++      +    Y + +PC      P C+  I  CG + V  CV    ++ 
Sbjct: 60  TVAIRLACKQEKSLILKDCIIYASAQPC------PMCSTAISACGAKEVYYCVPGTQIQE 113

Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
           +   +    + G+   + +  E       
Sbjct: 114 AFSQITNFEELGLHPKQFLRREYPCTHIH 142


>gi|319941641|ref|ZP_08015965.1| cytosine deaminase [Sutterella wadsworthensis 3_1_45B]
 gi|319804871|gb|EFW01725.1| cytosine deaminase [Sutterella wadsworthensis 3_1_45B]
          Length = 328

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/130 (31%), Positives = 51/130 (39%), Gaps = 17/130 (13%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--TAYGGCP--HAEVQ- 58
           +  D  FM  AL  ++   G+    P V  ++V DG VI RG   T   G P  HAE+  
Sbjct: 160 AEADRSFMRMALEEAQEA-GMAGEIP-VGAVVVADGKVIARGGNETLRSGDPTAHAEIVA 217

Query: 59  ----ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
               A   A       T YVTLEPC      P CA  I E   RR+V    D        
Sbjct: 218 LRAAAAALANHRLTNTTLYVTLEPC------PMCAGAIAEARCRRIVYGAGDSRRGALEG 271

Query: 115 GLQWLSQKGI 124
             +     G+
Sbjct: 272 AFRLFDIPGV 281


>gi|197123682|ref|YP_002135633.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
           sp. K]
 gi|196173531|gb|ACG74504.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
           sp. K]
          Length = 245

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLL 279
           I LDP  KL  +S  I       V I+TE          R + ++ ++   D   L  +L
Sbjct: 96  IALDPSGKLRWESGAIDADHA--VAILTERVPDRYLAFLRDRGVSYLFGGKDRIALPAVL 153

Query: 280 TILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
             L  R G+  LL+EGG  +  SF+ + ++D + L  + +  G  G P+  + G      
Sbjct: 154 RKLRARLGIRRLLLEGGGKINGSFLAAGVIDELSLLVAPVADGSVGTPALFDAGEPGPRL 213

Query: 339 MC 340
             
Sbjct: 214 RL 215


>gi|184154758|ref|YP_001843098.1| cytosine/adenosine deaminase [Lactobacillus fermentum IFO 3956]
 gi|227514025|ref|ZP_03944074.1| nucleoside deaminase [Lactobacillus fermentum ATCC 14931]
 gi|260663213|ref|ZP_05864105.1| cytosine/adenosine deaminase [Lactobacillus fermentum 28-3-CHN]
 gi|183226102|dbj|BAG26618.1| cytosine/adenosine deaminase [Lactobacillus fermentum IFO 3956]
 gi|227087611|gb|EEI22923.1| nucleoside deaminase [Lactobacillus fermentum ATCC 14931]
 gi|260552405|gb|EEX25456.1| cytosine/adenosine deaminase [Lactobacillus fermentum 28-3-CHN]
          Length = 174

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 52/156 (33%), Gaps = 22/156 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           M     +  +M  A + +     L      +  ++V  G +IGRG            HAE
Sbjct: 1   MEEKITERGYMKEAFKEANQAALL--GEVPIGAVVVYKGKIIGRGHNMREKFQDATYHAE 58

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           V A+ EA +            YVTLEPC        C+  II   I+RV     D     
Sbjct: 59  VLAIMEACQALGSWRLEECDLYVTLEPCIM------CSGAIINSRIKRVFFAAPDEKAGA 112

Query: 112 SGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
                  L       +  +   +M+ E    L  + 
Sbjct: 113 VSSLYHLLEDTRLNHQVEVHQGLMQEEASQMLKEFF 148


>gi|206968817|ref|ZP_03229772.1| cytosine deaminase [Bacillus cereus AH1134]
 gi|206735858|gb|EDZ53016.1| cytosine deaminase [Bacillus cereus AH1134]
          Length = 169

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 46/115 (40%), Gaps = 22/115 (19%)

Query: 5   SFDARFMSAALRFSRWHVG-LTSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHAEVQ 58
             D  F+  AL  +   +   T     V  +IV  +  VI RG            HAE+ 
Sbjct: 4   ERDRYFLQMALEEAEMALKENTYP---VGAVIVDGNNNVIARGRNRVHPQKDITAHAEID 60

Query: 59  ALEEAGEEARGA-------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           A+  AGE    A       T Y TLEPC      P C   I+   I+RVV  ++D
Sbjct: 61  AIRNAGEAMFDAKIKNEKFTIYSTLEPC------PMCTGGILFAKIQRVVWLLND 109


>gi|259502690|ref|ZP_05745592.1| tRNA-specific adenosine deaminase [Lactobacillus antri DSM 16041]
 gi|259169335|gb|EEW53830.1| tRNA-specific adenosine deaminase [Lactobacillus antri DSM 16041]
          Length = 173

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 46/127 (36%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            +  ++VKD  +IGRG            HAE+ A+ EA E        G   YVTLEPC 
Sbjct: 35  PIGAVVVKDQQIIGRGHNMREHFQDVTYHAEMLAIMEACERLHSWRLEGCDLYVTLEPCI 94

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGK 135
                  C+  II   I  +     DP                L+ +  +   +M+ E  
Sbjct: 95  M------CSGAIINARIANLYYGAADPKAGAVESLYHLMNDPRLNHQVQVASGVMQEECS 148

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 149 QMLKDFF 155


>gi|187776528|ref|ZP_02993001.1| hypothetical protein CLOSPO_00031 [Clostridium sporogenes ATCC
           15579]
 gi|187775187|gb|EDU38989.1| hypothetical protein CLOSPO_00031 [Clostridium sporogenes ATCC
           15579]
          Length = 148

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 21/147 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA-- 63
           ++  A+  ++  + +      V  +IVK+  +I +             HAEV A+++A  
Sbjct: 4   YIEYAIIEAKKALAI--GEVPVGAVIVKENKIIAKSHNLKEELKDPTAHAEVLAIKKACK 61

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                  +G   YVTLEPC+       CA  II+  I  + +   DP     G  +   +
Sbjct: 62  ILGNWRLKGCKMYVTLEPCAM------CASAIIQSRISELHIGTFDPVGGACGSVVNITN 115

Query: 121 Q----KGIIVDRMMESEGKIFLHAYLT 143
                  + +  +   E    +  +  
Sbjct: 116 NSYLKSNLTIKWLYNDECSKIITNFFQ 142


>gi|317403100|gb|EFV83631.1| zinc-binding hydrolase [Achromobacter xylosoxidans C54]
          Length = 163

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 52/128 (40%), Gaps = 22/128 (17%)

Query: 2   PVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKD-GIVIGRGVTA----YGGCPH 54
           P ++ DA FM+ AL  +R    +G       V  L+V   G ++GRG       +    H
Sbjct: 6   PWTAQDADFMTLALDEARAAYDIGEV----PVGALVVSAQGDILGRGYNRTIIDHDPTAH 61

Query: 55  AEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AE+ AL  A          G T YVTLEPC        C   ++   + RVV    DP  
Sbjct: 62  AEIVALRGAARALENYRLPGITVYVTLEPC------VMCIGAMLHARLARVVFGAYDPKT 115

Query: 110 RVSGRGLQ 117
              G  L 
Sbjct: 116 GACGSVLD 123


>gi|86606059|ref|YP_474822.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Synechococcus sp. JA-3-3Ab]
 gi|86554601|gb|ABC99559.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Synechococcus sp. JA-3-3Ab]
          Length = 224

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 72/225 (32%), Gaps = 15/225 (6%)

Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
               R H+   +A S D  I                  +    A+  A+++G  T+ A  
Sbjct: 1   MKTARPHVVAILAQSLDGRIATHRGQRPHFASAEDHQHLETQAARQQALIMGAATLRAYG 60

Query: 205 PELTCRLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
             L  R   L +          P+ II     ++  D    +  L   +    +      
Sbjct: 61  TSLRIRDPELIQRRLQQGLSPQPLTIICSGSGEIPEDLPFFRQPLTRWLWTTPQGS---R 117

Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
               R     I      DL   L  L   G+  + + GG  +  +F+ +  +D + +  +
Sbjct: 118 LWQNRTGFEEIWVAADWDLPARLARLRSLGIERVGLLGGGRLLGAFLQAGALDELWVTLA 177

Query: 317 QIVI-GEGGIPSPLEEGYLE---KNFMCVRRDYFGSDVCLEYIGK 357
            +++ G    P+ +E   L+        +       ++ L Y  +
Sbjct: 178 PVLLSGYADAPASIEGWQLQGSPPQLELLECHRGSKELFLRYRVE 222


>gi|269217562|ref|ZP_06161416.1| tRNA-specific adenosine deaminase [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269212497|gb|EEZ78837.1| tRNA-specific adenosine deaminase [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 166

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 58/156 (37%), Gaps = 22/156 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQ 58
           V   +  ++  A+  +       + +  V  L+V+   V+G G            HAE+ 
Sbjct: 19  VHEIEREWIGRAMELADRAAL--AGDVPVGALVVRGSAVLGVGWNTREARNDPAGHAEIA 76

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL EA +        G   YVTLEPC        CA  I+   + RVV    DP    +G
Sbjct: 77  ALREAAQAVGDWRLEGCDLYVTLEPC------TMCAGAIVASRVARVVFGAWDPKAGAAG 130

Query: 114 RGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTR 144
                L    +     +V  + E E    L A+  R
Sbjct: 131 SVRDVLRDARLNHRVEVVGGVREDECSRQLRAFFGR 166


>gi|126139263|ref|XP_001386154.1| DRAP deaminase [Scheffersomyces stipitis CBS 6054]
 gi|126093436|gb|ABN68125.1| DRAP deaminase [Scheffersomyces stipitis CBS 6054]
          Length = 585

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 10/135 (7%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEE---- 62
            +FM  +L  +      T T  +V  ++V  G V+  G +    G  HAE  ALE+    
Sbjct: 434 RKFMELSLEMANKCD-ETQTQYNVGAVLVNRGKVLATGHSRELPGNTHAEQCALEKYFEE 492

Query: 63  --AGEEARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVR-VSGRGLQW 118
               E  +G   Y T+EPC+     + PCA  II   I+   V + +PD    +      
Sbjct: 493 TGKREIPKGTEIYTTMEPCTLRLSGNIPCADRIIGTTIKTCFVGIVEPDTFVKNNSCSAK 552

Query: 119 LSQKGIIVDRMMESE 133
            ++ GI    +   E
Sbjct: 553 FAENGIEYIHIPGYE 567


>gi|113477509|ref|YP_723570.1| tRNA-adenosine deaminase [Trichodesmium erythraeum IMS101]
 gi|110168557|gb|ABG53097.1| tRNA-adenosine deaminase [Trichodesmium erythraeum IMS101]
          Length = 156

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 45/119 (37%), Gaps = 16/119 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
            ++MS  L  ++   G     P  A ++  DG ++               HAE+ AL +A
Sbjct: 11  KKWMSRVLELAKTA-GDAGEVPVAAAVVNSDGKLVTEAQNRRERDFDPTGHAEILALRQA 69

Query: 64  GEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           G+  +       T YV LEPC      P C   I++  I  +V   DDP          
Sbjct: 70  GQVLQNWHLNQCTLYVNLEPC------PMCTGAILQARIGLLVYGADDPKTGTVRTVAN 122


>gi|150019816|ref|YP_001312070.1| CMP/dCMP deaminase, zinc-binding [Clostridium beijerinckii NCIMB
           8052]
 gi|149906281|gb|ABR37114.1| CMP/dCMP deaminase, zinc-binding [Clostridium beijerinckii NCIMB
           8052]
          Length = 149

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 17/117 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           F+  A   ++  +        V  +IV D  +IGR             HAE+ A++EA +
Sbjct: 4   FLKIAKEEAKMAM--KKGEIPVGAVIVLDDKIIGRAHNLKETLNDSTAHAEILAIKEASK 61

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
                    A  YVTLEPC      P CA  II+  I +V +   + D+   G  + 
Sbjct: 62  FIGDWRLNRAEMYVTLEPC------PMCAGAIIQSRISKVYIGTFNKDMGACGSVID 112


>gi|237748387|ref|ZP_04578867.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229379749|gb|EEO29840.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 241

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 24/158 (15%)

Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMR----------------IILDPHFKLSLDS 234
           DA  +G  TV  D      R       SP                  I++DP  K+   S
Sbjct: 48  DAEWLGRKTVQTD----LVRDTFDHGQSPKAESFDTFFGTCETARMCIVMDPKGKIRYSS 103

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLV 292
             I    +  ++++ E+         R+  I+ ++      DL K L  L   G+  +++
Sbjct: 104 DRIMGENI--IVVLGESVSQSYLEHLRELGISYLFAGRHGNDLNKALETLGEFGLRKIML 161

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           +GG  +  SF+ + L+D + L     + G  GIP+  E
Sbjct: 162 QGGGIINGSFLKAGLIDELSLLIYPGIDGRAGIPAVFE 199


>gi|329928171|ref|ZP_08282117.1| guanine deaminase [Paenibacillus sp. HGF5]
 gi|328938048|gb|EGG34447.1| guanine deaminase [Paenibacillus sp. HGF5]
          Length = 188

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 42/111 (37%), Gaps = 16/111 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             +M  A+  +  +V      P    ++VKDG VIGRG            HAEVQA+ EA
Sbjct: 36  EYWMHQAIAEAHRNVQHVEGGP-FGAIVVKDGQVIGRGRNLVTALNDPTAHAEVQAIREA 94

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
                  + +G T Y + EPC      P C   I       V       D 
Sbjct: 95  CLHLEDFQLKGCTIYTSCEPC------PMCLGAIYWSRPDAVYYASTKQDA 139


>gi|312215394|emb|CBX95346.1| similar to cytosine deaminase [Leptosphaeria maculans]
          Length = 152

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 64/158 (40%), Gaps = 26/158 (16%)

Query: 3   VSSFDARFMSAALRFSRWHV---GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
           +SS D  F  AAL  +R      GL    P  ACL+   G ++GRG            HA
Sbjct: 1   MSSADIGF-QAALEEARTGSSEGGL----PIGACLVSAQGKILGRGHNMRIQRGSATLHA 55

Query: 56  EVQALEEAGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           E+ ALE AG       + AT Y TL PC        C    I   ++RVV+  +   V  
Sbjct: 56  EISALERAGRLPASAYQDATMYTTLSPCDM------CTGACILYKVKRVVIGENQTFVGG 109

Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
                  L  KGI V  + + E +  +  ++  + +  
Sbjct: 110 EDH----LKSKGIEVVVLQDPECQNLMADFIKEKPQDW 143


>gi|288800754|ref|ZP_06406211.1| cytidine/deoxycytidylate deaminase family protein [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288332215|gb|EFC70696.1| cytidine/deoxycytidylate deaminase family protein [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 144

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 51/145 (35%), Gaps = 17/145 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           D  FM+ AL  ++    L +    V  ++V    +I R             HAE+QA+  
Sbjct: 4   DEWFMTKALEQAQLA--LEAGEIPVGAVVVAKDKIIARSHNLTEMLCDVTAHAEMQAITS 61

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
                 G      T YVTLEPC        CA  I    + R+V    D           
Sbjct: 62  GTNSLGGKYLNECTLYVTLEPC------VMCAGAIGWSQLGRLVYGASDDKRGFMRFAPN 115

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYL 142
            L  K  +   +ME E K  +  + 
Sbjct: 116 ALHPKTKVTKGVMEEECKTIIQNFF 140


>gi|22298002|ref|NP_681249.1| cytosine deaminase [Thermosynechococcus elongatus BP-1]
 gi|22294180|dbj|BAC08011.1| cytosine deaminase [Thermosynechococcus elongatus BP-1]
          Length = 193

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 61/151 (40%), Gaps = 19/151 (12%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQAL 60
           + D  FM+AA+  +    GL      +  ++V+ G +IGRG       G P  HAE+  L
Sbjct: 44  TMDE-FMAAAIAEAE--QGLQEGGIPIGSVLVRHGQIIGRGHNQRVQRGSPILHAEIDCL 100

Query: 61  EEAGEEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
             AG   R      Y TL PC        CA  +++ GI++V+               ++
Sbjct: 101 ANAGRIGRYDDTVLYSTLMPCY------LCAGAVVQFGIKKVIAGESQTFAGAR----EF 150

Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           +   G+ V  +     +  +  ++ +  +  
Sbjct: 151 MEAHGVEVIDLNLERCQQLMRDFIAQYPQLW 181


>gi|300114455|ref|YP_003761030.1| CMP/dCMP deaminase zinc-binding protein [Nitrosococcus watsonii
           C-113]
 gi|299540392|gb|ADJ28709.1| CMP/dCMP deaminase zinc-binding protein [Nitrosococcus watsonii
           C-113]
          Length = 187

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 16/109 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
           ++M  A+  SR  + L    P    +I K+G ++G G            HAE++A+ +A 
Sbjct: 38  QWMRRAIELSRKAMELGDGFP-FGSVIAKEGEIVGEGWNRSWVNRDPSAHAEIEAIRDAC 96

Query: 65  EE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           +        G   Y + +PC      P C   I   G  R+       D
Sbjct: 97  KRLDTLSLEGCDVYASAQPC------PMCIAAIYWAGANRIFFGNSARD 139


>gi|189350770|ref|YP_001946398.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           multivorans ATCC 17616]
 gi|189334792|dbj|BAG43862.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           multivorans ATCC 17616]
          Length = 159

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 50/127 (39%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
            V  ++V+   V+ RG     G      HAE+ AL  A +  +     G   YVTLEPC 
Sbjct: 18  PVGAVLVRGDEVLARGFNHPIGGHDPSAHAEMAALRMAAQHLQNYRMPGCELYVTLEPCL 77

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  CA  I+   I RVV    DP   V G  +       L+    +V  ++  E  
Sbjct: 78  M------CAGAIMHARIARVVFGAADPKTGVCGSVMDAFANPQLNHHTEVVGGVLAHECG 131

Query: 136 IFLHAYL 142
             L ++ 
Sbjct: 132 AALKSFF 138


>gi|312879894|ref|ZP_07739694.1| tRNA-adenosine deaminase [Aminomonas paucivorans DSM 12260]
 gi|310783185|gb|EFQ23583.1| tRNA-adenosine deaminase [Aminomonas paucivorans DSM 12260]
          Length = 152

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 48/120 (40%), Gaps = 17/120 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA--- 63
           M  AL  +R    L      V  + V  G ++GRG            HAE++AL +A   
Sbjct: 1   MGEALAEARLA--LEEGEIPVGAVAVDHGRIVGRGRNRRKLQEAPFAHAEMEALRDACAS 58

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                  G T YVTLEPC      P CA  I++  + R+V    DP     G  +  L  
Sbjct: 59  LGTWRLDGVTLYVTLEPC------PMCAGAILQTRVGRLVFGARDPRAGACGSLVDLLRD 112


>gi|190894029|ref|YP_001984323.1| probable 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
           [Rhizobium etli CIAT 652]
 gi|190699690|gb|ACE93773.1| probable 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
           [Rhizobium etli CIAT 652]
          Length = 233

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 5/114 (4%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLL 279
           +I+D   +L  D           V++   + D        +  ++ I    D  DLK  L
Sbjct: 90  VIVDKDGRLRWDKS--DIEGAHLVVLTGSDVDDAYLAGLTQAGVSYIVSEKDGVDLKNAL 147

Query: 280 TILV-GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
            +L    GV  L++EGGA     F+ + LVD + L     + G+   P+  E G
Sbjct: 148 DLLGTEFGVKRLMLEGGAQTNGHFLKAGLVDEVSLVIFPAIGGKSSTPAIFEGG 201


>gi|325298404|ref|YP_004258321.1| CMP/dCMP deaminase zinc-binding protein [Bacteroides salanitronis
           DSM 18170]
 gi|324317957|gb|ADY35848.1| CMP/dCMP deaminase zinc-binding protein [Bacteroides salanitronis
           DSM 18170]
          Length = 144

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 52/149 (34%), Gaps = 17/149 (11%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
           + D  +M  AL  +            V  ++V  G +I R      T      HAE+QA+
Sbjct: 2   ADDTFYMKQALAEAEKA--SARGEVPVGAVVVCQGRIIARAHNLTETLNDVTAHAEMQAI 59

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A            T YVT+EPC        CA  I    + ++V    D         
Sbjct: 60  TAAANALGAKYLNDCTLYVTVEPC------VMCAGAIAWAQLGKLVFGAGDEKRGYMRYA 113

Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
              L  K  +V  +++ E    + A+  +
Sbjct: 114 PAALHPKTEVVSGVLKDECAGLMTAFFRK 142


>gi|293401503|ref|ZP_06645646.1| probable deoxycytidylate deaminase [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305141|gb|EFE46387.1| probable deoxycytidylate deaminase [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 161

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 60/154 (38%), Gaps = 35/154 (22%)

Query: 1   MPVSSFDARFMSAA-LRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV------------ 46
           M V S+D  FM  A L   R     T     V  +IV  +  V+  G             
Sbjct: 4   MDVLSWDEYFMGLAHLSAMRSKDPSTQ----VGAVIVSGEHRVVSIGYNGFPNGCSDDEF 59

Query: 47  ----------TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                     T Y    HAE+ A+  +  + RG + YV+L PC+       CA+ II+ G
Sbjct: 60  PWDREGDFGATKYPYVVHAELNAILNSKNDLRGCSIYVSLFPCNE------CAKAIIQSG 113

Query: 97  IRRVVVCVDDP-DVRVSGRGLQWLSQKGIIVDRM 129
           I R+V   D   D   +    + L   G+ + ++
Sbjct: 114 ISRIVYESDKYADTDATIASKRMLRAAGVELYQL 147


>gi|238508831|ref|XP_002385598.1| cytosine deaminase, putative [Aspergillus flavus NRRL3357]
 gi|317157687|ref|XP_001826520.2| cytidine and deoxycytidylate deaminase zinc-binding domain protein
           [Aspergillus oryzae RIB40]
 gi|220688490|gb|EED44843.1| cytosine deaminase, putative [Aspergillus flavus NRRL3357]
          Length = 174

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 60/178 (33%), Gaps = 22/178 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           M   S  A FM  AL      +  T   P V C++V D  ++  G+        G  HAE
Sbjct: 1   MEEDSRHAYFMKQALLMGEKAL-ETGETP-VGCVLVYDNQIVSSGMNDTNRSMNGTRHAE 58

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
             ALE           R    YVT+EPC        CA  + +  I+ V     +     
Sbjct: 59  FIALERMLRNYPKSLLRSTKLYVTVEPC------VMCASALRQYRIQAVYFGCSNERFGG 112

Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164
           +G  L   +   I     +   +   E  + L  +  ++ EK      K     +   
Sbjct: 113 TGSILSLHTDFSIDPPYPVYGGLFSKEAVMLLRRFYIQENEKAPKPRPKKNRELNTRF 170


>gi|124021920|ref|YP_001016227.1| RibD/RibG domain-containing protein [Prochlorococcus marinus str.
           MIT 9303]
 gi|123962206|gb|ABM76962.1| RibD/ribG C-terminal domain [Prochlorococcus marinus str. MIT 9303]
          Length = 238

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 82/229 (35%), Gaps = 15/229 (6%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA--- 202
           ++K+  + L +A+S D  +  A  G   + G   +  +    A +D  L+G GT+ A   
Sbjct: 1   MQKQFWLRLVLAISLDGRLAPAIGGPAQLGGVGDRRVLEEALAWADGALLGAGTLRAHRS 60

Query: 203 -----DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
                D   L  R +      P  +++      + +    +  +   ++           
Sbjct: 61  TCLIRDQDLLNQRKSAGHSAQPTAVVVSRQQWYAAEVPFFQQPIERWLLSPHFAKAKGSK 120

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
                          +D  + L  L   G+  L++ GGA +A S + + +VD + L  + 
Sbjct: 121 DPLLPVGYERQVLFEQDWPQALNHLAELGLLRLVLLGGAQLAASLLQADVVDELQLTLTP 180

Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYF-------GSDVCLEYIGKNL 359
            ++G      P + G L  +       +         +++ L Y  K +
Sbjct: 181 KLLGGMHAWVPFQGGGLPDDLGDAEAWHLQTVEPLTDNELLLRYERKRV 229


>gi|315225628|ref|ZP_07867437.1| competence protein ComEB [Capnocytophaga ochracea F0287]
 gi|314944445|gb|EFS96485.1| competence protein ComEB [Capnocytophaga ochracea F0287]
          Length = 146

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 60/148 (40%), Gaps = 38/148 (25%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
           +D  +M  A+ +++           V  +IVKD ++I  G     G P            
Sbjct: 12  YDKAYMRMAMEWAKLSYSQRK---QVGAIIVKDRMIISDGY---NGTPTGFDNCCEDEEG 65

Query: 54  -------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A+     + + + GAT Y+T+ PC        C++ I + GI+RVV  
Sbjct: 66  NTHWYVLHAEANAIMKVASSTQSSEGATLYITMSPCKE------CSKLIYQSGIKRVVYK 119

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMME 131
               D      GL +L + G+ V  + E
Sbjct: 120 EGYRD----NEGLAFLEKAGVEVVHLEE 143


>gi|293605714|ref|ZP_06688091.1| cytidine/deoxycytidylate deaminase [Achromobacter piechaudii ATCC
           43553]
 gi|292815893|gb|EFF74997.1| cytidine/deoxycytidylate deaminase [Achromobacter piechaudii ATCC
           43553]
          Length = 169

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 18/125 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTA----YGGCPHAEV 57
            ++ DAR++  AL+ ++    +      V  L+V   G ++GRG       +    HAE+
Sbjct: 13  WTAEDARYIELALQEAQAAYEI--GEVPVGALVVSAQGEILGRGYNRTIIDHDPTAHAEI 70

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL  A          G T YVTLEPC        C   ++   + RVV    DP     
Sbjct: 71  VALRNAARRLENYRLPGITVYVTLEPC------VMCIGAMLHARLARVVFGAYDPKTGAC 124

Query: 113 GRGLQ 117
           G  L 
Sbjct: 125 GSVLD 129


>gi|52079816|ref|YP_078607.1| guanine deaminase [Bacillus licheniformis ATCC 14580]
 gi|52785186|ref|YP_091015.1| GuaD [Bacillus licheniformis ATCC 14580]
 gi|319646374|ref|ZP_08000604.1| GuaD protein [Bacillus sp. BT1B_CT2]
 gi|52003027|gb|AAU22969.1| guanine deaminase [Bacillus licheniformis ATCC 14580]
 gi|52347688|gb|AAU40322.1| GuaD [Bacillus licheniformis ATCC 14580]
 gi|317392124|gb|EFV72921.1| GuaD protein [Bacillus sp. BT1B_CT2]
          Length = 156

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 41/115 (35%), Gaps = 16/115 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA 63
             F+  A+  +   V   +  P    +IVKDG +I  G     T+     HAEV A+  A
Sbjct: 4   EAFLQRAIDLAVESVKSGTGGP-FGAVIVKDGQIIAEGKNNVTTSNDPTAHAEVTAIRLA 62

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            E     +      Y + EPC      P C   I     + V       D   +G
Sbjct: 63  CEALGDYQLNDCILYTSCEPC------PMCLGAIYWARPKEVYFAAQHSDAASAG 111


>gi|323525792|ref|YP_004227945.1| CMP/dCMP deaminase zinc-binding protein [Burkholderia sp. CCGE1001]
 gi|323382794|gb|ADX54885.1| CMP/dCMP deaminase zinc-binding protein protein [Burkholderia sp.
           CCGE1001]
          Length = 227

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 60/155 (38%), Gaps = 22/155 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEV 57
           P+S  D RFM+     +       +    V  ++V+   VI +G     G      HAE+
Sbjct: 47  PISDRDRRFMAL--AQAAAEEARAAGEVPVGAVLVRGDEVIAKGFNHPIGAHDPSAHAEM 104

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL  A +        G   YVTLEPC        CA  I+   I RVV    DP     
Sbjct: 105 IALRTAAQIVENYRLPGCELYVTLEPCLM------CAGAIMHARIARVVFGARDPKTGAC 158

Query: 113 GRGLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
           G  +       L+    +V  ++ESE    L ++ 
Sbjct: 159 GSVVDAFANPQLNHHTEVVGGVLESECGAALKSFF 193


>gi|92118638|ref|YP_578367.1| CMP/dCMP deaminase, zinc-binding [Nitrobacter hamburgensis X14]
 gi|91801532|gb|ABE63907.1| tRNA-adenosine deaminase [Nitrobacter hamburgensis X14]
          Length = 148

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 57/147 (38%), Gaps = 22/147 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEA-- 63
           FM  AL  +    G +   P + C+IV+DG VI     R +T      HAEV AL  A  
Sbjct: 6   FMDLALE-AANSAGKSGEVP-IGCVIVRDGEVIAAAGNRTLTDRDPTAHAEVLALRAAAH 63

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-- 118
               E       YVTLEPC        CA  I    IRR+     DP       G+++  
Sbjct: 64  AIGSERLTDCDLYVTLEPC------TMCAGAISFARIRRLYYGAPDPKGGAVDSGVRFFA 117

Query: 119 ---LSQKGIIVDRMMESEGKIFLHAYL 142
                 +  +   + ESE    L  + 
Sbjct: 118 APTCHHRPEVYPAVGESEAATLLRDFF 144


>gi|86607357|ref|YP_476120.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing
           protein [Synechococcus sp. JA-3-3Ab]
 gi|86555899|gb|ABD00857.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Synechococcus sp. JA-3-3Ab]
          Length = 174

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 23/152 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAY----GGCPHAEVQALEE 62
             +M  AL+ +    G     P VA L+V  G  ++               HAE+ AL +
Sbjct: 23  RAWMQLALQEAERA-GEAGEVP-VAALVVGPGEELLALSSNRRERDRDPTAHAEILALRQ 80

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AG+       +G   YVTLEPC      P CA  I +  + +V+   DDP        L 
Sbjct: 81  AGQRLGDWQLQGCRLYVTLEPC------PMCAGAISQSRLAQVIYGADDPKAGALRSVLN 134

Query: 118 WLSQKG-----IIVDRMMESEGKIFLHAYLTR 144
             +         ++  + E+E +  L  + +R
Sbjct: 135 LPASAASFHCPEVIGGVCEAECRRLLQQWFSR 166


>gi|313894732|ref|ZP_07828293.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320531057|ref|ZP_08032086.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Selenomonas artemidis F0399]
 gi|312976641|gb|EFR42095.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320136639|gb|EFW28592.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Selenomonas artemidis F0399]
          Length = 159

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 55/149 (36%), Gaps = 33/149 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGV-------------TAYG 50
           ++D  FM  A+  +         +  V   IV +   ++G G                  
Sbjct: 4   TWDEYFMGIAIFSAYRSK---DPHTQVGACIVNEDKHIVGVGYNGMPNGCDDSEYPWGRT 60

Query: 51  GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           G           HAE+ A+  A    +G   YV+L PC+       C + II+ GIR VV
Sbjct: 61  GEFADQKYPYVVHAELNAILNASTSLKGCRIYVSLFPCNE------CCKAIIQSGIREVV 114

Query: 102 VCVDDPDVRVSGR-GLQWLSQKGIIVDRM 129
              D      S +   + L+  G++  RM
Sbjct: 115 YLSDKYAATDSTKASKRMLASAGVVCRRM 143


>gi|156564196|ref|YP_001429706.1| deoxycytidylate deaminase [Bacillus phage 0305phi8-36]
 gi|154622893|gb|ABS83773.1| deoxycytidylate deaminase [Bacillus phage 0305phi8-36]
          Length = 255

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 55/148 (37%), Gaps = 33/148 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            +D  F+  AL  +      T +   V C++VK+  VI  G                   
Sbjct: 115 PWDQYFIEQALHVAERG---TCSRARVGCVLVKENRVIATGYNGSPKGMPHCDDIGHLMK 171

Query: 54  --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  AL +    G  + GATAYVT EPC +      C + + + GI+R+V 
Sbjct: 172 DGHCVRTNHAEENALLQCARLGISSEGATAYVTHEPCLY------CTRQLNQAGIKRIVY 225

Query: 103 CVDDPDVRVS--GRGLQWLSQKGIIVDR 128
               P+         + W   +G I   
Sbjct: 226 VKPYPNDYNEYFIGDMDWEQYEGEIQHG 253


>gi|315223581|ref|ZP_07865436.1| tRNA-specific adenosine deaminase [Capnocytophaga ochracea F0287]
 gi|314946497|gb|EFS98491.1| tRNA-specific adenosine deaminase [Capnocytophaga ochracea F0287]
          Length = 158

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 54/149 (36%), Gaps = 17/149 (11%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
           + D  FM  AL  ++           V  +I  D  +I +             HAE+QA+
Sbjct: 16  NTDEYFMQKALEEAQLA--FEEDEIPVGAIITIDNRIIAKAHNLTERLNDVTAHAEMQAI 73

Query: 61  EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A     G+   G T Y+TLEPC+       CA  +    + R+V    D     S  G
Sbjct: 74  TMAAHYLGGKYLTGCTMYLTLEPCAM------CAGALYWSQLSRLVYAAPDTHRGYSVMG 127

Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            +   +  ++   + +    +    +  +
Sbjct: 128 GKLHPKTEVVTGILSQEATALLKQFFQQK 156


>gi|291569301|dbj|BAI91573.1| putative cytidine/deoxycytidylate deaminase [Arthrospira platensis
           NIES-39]
          Length = 157

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 47/120 (39%), Gaps = 18/120 (15%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA 63
            +M  AL+      G     P V  LIV + G +I +G            HAE+ AL +A
Sbjct: 10  HWMQQALKLGA-AAGEAGEVP-VGALIVNQQGKLIAQGENRRERDPDPTAHAEIIALRQA 67

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            +          T YVTLEPC      P CA  I++  I  +V  VDDP           
Sbjct: 68  SQVLGDWHLNTCTLYVTLEPC------PMCAGAILQARIGLLVYGVDDPKTGSIRTVCNL 121


>gi|312195561|ref|YP_004015622.1| CMP/dCMP deaminase zinc-binding protein [Frankia sp. EuI1c]
 gi|311226897|gb|ADP79752.1| CMP/dCMP deaminase zinc-binding protein [Frankia sp. EuI1c]
          Length = 161

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 10/128 (7%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDG-IVIGRGVTAYGGCP--HAEVQAL 60
             D  ++  A+  +      + T  SV  +IV  DG  V+  G  +  G P  HAE  AL
Sbjct: 14  DADGHWLEYAVELALR-CPPSRTAFSVGAVIVGPDGATVLAEGW-SRAGDPRDHAEEAAL 71

Query: 61  EE-AGEEAR--GATAYVTLEPCSHYGRSPP-CAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
              A  + R  GAT Y +LEPCS     P  C +  +  GI RVV    +P + V  +G 
Sbjct: 72  RGFAPGDPRLAGATLYSSLEPCSARASRPRTCTELTLAAGIGRVVFAWREPALFVDCQGA 131

Query: 117 QWLSQKGI 124
           + L+  G+
Sbjct: 132 ELLAAAGV 139


>gi|289208092|ref|YP_003460158.1| CMP/dCMP deaminase zinc-binding protein [Thioalkalivibrio sp.
           K90mix]
 gi|288943723|gb|ADC71422.1| CMP/dCMP deaminase zinc-binding protein [Thioalkalivibrio sp.
           K90mix]
          Length = 146

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 20/154 (12%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGE 65
           F+ AAL  +R   G       +  +I   G ++GRG            HAE+ ALE AG 
Sbjct: 4   FLEAALDEAR--TGWDEGGIPIGSVIEHGGRIVGRGHNRRVQSGSAILHAEMDALENAGR 61

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +     R  T Y TL PC+       C+  I+  GI RVVV  +   +        WL  
Sbjct: 62  QPASVYRECTLYTTLSPCAM------CSGAIVLYGIPRVVVGENATFMGEE----DWLRS 111

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
            G+ VD + ++  +  + A++ R  +        
Sbjct: 112 HGVQVDVLQDAACQELMTAFIERHPDLWHEDIGC 145


>gi|317051389|ref|YP_004112505.1| CMP/dCMP deaminase zinc-binding protein [Desulfurispirillum indicum
           S5]
 gi|316946473|gb|ADU65949.1| CMP/dCMP deaminase zinc-binding protein [Desulfurispirillum indicum
           S5]
          Length = 167

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 54/157 (34%), Gaps = 22/157 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE- 62
            RFM+ AL  +R           V  +IV+ G +I R             HAEV A+ E 
Sbjct: 11  ERFMAVALEEARQAAQR--GEVPVGAVIVRHGEIIARAGNRKEEHRDPTAHAEVLAIREA 68

Query: 63  ----AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD----VRVSGR 114
               A         YVTLEPC        C   II   I RV     D         +  
Sbjct: 69  AAACANWRLEDVELYVTLEPC------VMCCGAIIAARIPRVYYACSDEKYGGISLFAMT 122

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLH-AYLTRQVEKRS 150
             Q L+ +      ++E   +  L   + TR+ E   
Sbjct: 123 ADQRLNHQVDARRGLLEQRCRQLLEAFFSTRRAEHHP 159


>gi|212535962|ref|XP_002148137.1| tRNA-specific adenosine deaminase subunit TAD2, putative
           [Penicillium marneffei ATCC 18224]
 gi|210070536|gb|EEA24626.1| tRNA-specific adenosine deaminase subunit TAD2, putative
           [Penicillium marneffei ATCC 18224]
          Length = 190

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 66/166 (39%), Gaps = 27/166 (16%)

Query: 3   VSSFD-ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
           V+  D  +FM  AL      +  G T     V C++V  G +IG G+        G  HA
Sbjct: 18  VTQEDQEKFMKEALSMGEKALEAGET----PVGCVLVLQGKIIGSGMNDTNRSMNGTRHA 73

Query: 56  EVQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E  A+EEA +       +    YVT+EPC        CA  + +  IRRV     +    
Sbjct: 74  EFLAIEEALQTYPRSIFKHVDLYVTVEPC------VMCASLLRQYNIRRVFFGCANERFG 127

Query: 111 VSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSH 151
            +G  L   S   I     +   + +++  + L  +  ++ E   +
Sbjct: 128 GTGSVLSLHSDPCIDPRYPVHSGIFKNDAILLLRRFYIQENENAPN 173


>gi|325838575|ref|ZP_08166576.1| guanine deaminase [Turicibacter sp. HGF1]
 gi|325490801|gb|EGC93104.1| guanine deaminase [Turicibacter sp. HGF1]
          Length = 154

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 37/113 (32%), Gaps = 16/113 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
            ++M  A+  +   V      P    +IVKD  VI +             HAE+ A+  A
Sbjct: 2   EKYMKMAIEEAENGVKCKHGGP-FGAVIVKDNQVIAKAHNTVVKENDPTCHAEINAIRLA 60

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
                  +      + + EPC      P C   I+  GI  V       D   
Sbjct: 61  SRTLNTFKLNDCLLFTSSEPC------PMCLSAILWAGIETVYYGCTVEDANK 107


>gi|293375825|ref|ZP_06622095.1| putative guanine deaminase [Turicibacter sanguinis PC909]
 gi|292645602|gb|EFF63642.1| putative guanine deaminase [Turicibacter sanguinis PC909]
          Length = 154

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 37/113 (32%), Gaps = 16/113 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
            ++M  A+  +   V      P    +IVKD  VI +             HAE+ A+  A
Sbjct: 2   EKYMKMAIEEAENGVKCKHGGP-FGAVIVKDNQVIAKAHNTVVKENDPTCHAEINAIRLA 60

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
                  +      + + EPC      P C   I+  GI  V       D   
Sbjct: 61  SRTLNTFKLNDCLLFTSSEPC------PMCLSAILWAGIETVYYGCTVEDANK 107


>gi|294674558|ref|YP_003575174.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing
           protein [Prevotella ruminicola 23]
 gi|294472670|gb|ADE82059.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Prevotella ruminicola 23]
          Length = 150

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 53/145 (36%), Gaps = 17/145 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D R+M  AL  +  H+ L +    +  ++V    V+ R      T      HAE+QA+  
Sbjct: 10  DERYMQMALDEA--HLALEAGEIPIGAVVVCKDRVVSRAHNLTETLCDVTAHAEMQAITA 67

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G      T YVT+EPC        CA  I    I R+V    D           
Sbjct: 68  AANTLGGKYLTECTLYVTVEPC------TMCAGAIGWAQIPRIVYGAPDDKRGYHLLAPH 121

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYL 142
               K  +   ++E E +  +  + 
Sbjct: 122 AFHPKAQVTQGVLEDECRELMQNFF 146


>gi|322436459|ref|YP_004218671.1| CMP/dCMP deaminase zinc-binding protein [Acidobacterium sp.
           MP5ACTX9]
 gi|321164186|gb|ADW69891.1| CMP/dCMP deaminase zinc-binding protein [Acidobacterium sp.
           MP5ACTX9]
          Length = 160

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 46/122 (37%), Gaps = 16/122 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
           M +     +FM  A+  +  +V      P    +IV+ G VI  G+           HAE
Sbjct: 1   MTLPPDHDKFMQQAIDLATQNVLSGRGGP-FGAVIVRAGEVIATGINLVTATNDPTAHAE 59

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           V A+  A       E RGAT Y + EPC      P C   I+   I  +       D   
Sbjct: 60  VTAIRNACAHLSTFELRGATLYSSCEPC------PMCLTAILWSRIDTLYFGSTATDAAE 113

Query: 112 SG 113
           +G
Sbjct: 114 AG 115


>gi|189485590|ref|YP_001956531.1| tRNA-specific adenosine deaminase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287549|dbj|BAG14070.1| tRNA-specific adenosine deaminase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 149

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 17/116 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEE 66
           M  AL+ +       S    +  +IVKD  +I RG            HAE+ AL +A ++
Sbjct: 1   MFQALKEASKAR--ESREVPIGAVIVKDNKIIARGFNKCIALSDPTAHAEIVALRKAAKK 58

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            +        AY T+EPC        CA  + +  I++++    D         L+
Sbjct: 59  LKNYRLNDCYAYATIEPCLM------CAGALAKARIKKIIFGAFDKKADCYKNILK 108


>gi|115727549|ref|XP_789050.2| PREDICTED: similar to deaminase domain containing 1
           [Strongylocentrotus purpuratus]
 gi|115955250|ref|XP_001190121.1| PREDICTED: similar to deaminase domain containing 1
           [Strongylocentrotus purpuratus]
          Length = 201

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 25/133 (18%)

Query: 1   MPVSS--FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPH 54
           M  S   +D ++M+ A+  ++  +G       V CL+V +  +IG G  A         H
Sbjct: 1   MAQSEEVYDEKWMTEAVNMAKQALGR--GEVPVGCLLVYEDQIIGTGGNAVNETKNATRH 58

Query: 55  AEVQALEEA----------GEEARGAT-AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           AE+ ALEEA           EE    T  +VT+EPC        CA  +   GI++VV  
Sbjct: 59  AEILALEEAMRWCDDKQLEREEVFSRTKLFVTVEPCIM------CAGALRIMGIKKVVYG 112

Query: 104 VDDPDVRVSGRGL 116
             +      G  L
Sbjct: 113 CRNERFGGCGSIL 125


>gi|312885990|ref|ZP_07745618.1| CMP/dCMP deaminase zinc-binding [Mucilaginibacter paludis DSM
           18603]
 gi|311301527|gb|EFQ78568.1| CMP/dCMP deaminase zinc-binding [Mucilaginibacter paludis DSM
           18603]
          Length = 150

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 45/129 (34%), Gaps = 36/129 (27%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M   SF+  FM+ AL  ++    + +    V  ++ KD  +I  G               
Sbjct: 1   MQKPSFEHIFMNLALDLAQRSHCVKA---QVGAVLAKDTRIISIGYNGPPAGTHNCDEEW 57

Query: 54  -----------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFII 93
                            HAE  A+  A   G    GAT Y TL PC       PCA+ I 
Sbjct: 58  PETGCARDAKGSCSLALHAEENAILYAVKNGARLEGATLYTTLSPCL------PCARLIF 111

Query: 94  ECGIRRVVV 102
             GI+ V  
Sbjct: 112 SAGIKHVYF 120


>gi|332829184|gb|EGK01848.1| hypothetical protein HMPREF9455_01996 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 147

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 53/152 (34%), Gaps = 32/152 (21%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC------------- 52
            D R+M  A   + W          V  LIVKD ++I  G                    
Sbjct: 9   LDERYMRMA---AIWAENSYCVRRKVGALIVKDKMIISDGYNGTPAGFENICEDENNETK 65

Query: 53  ---PHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               HAE  A+ +       + GAT YVT  PC        CA+ II+ GI+RVV     
Sbjct: 66  PYVLHAEANAITKVACSHNSSMGATMYVTTSPCIE------CAKLIIQAGIKRVVYNQKY 119

Query: 107 PDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138
                   G   L + GI V  +   E +   
Sbjct: 120 R----RSDGAALLERAGIEVVLIEMDETEKNH 147


>gi|148244957|ref|YP_001219651.1| hypothetical protein COSY_0821 [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326784|dbj|BAF61927.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 153

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 19/125 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-----GGCPHAEVQALEEAG 64
           +M+ A+  ++         P V  +++++  +IG G             HAE+Q L  AG
Sbjct: 8   WMTLAIEQAKQAQ-QIGEIP-VGAILIQNNQLIG-GAHNQTILNNDPTAHAEIQLLRIAG 64

Query: 65  EEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           ++       G T YVTLEPC        C   I+   I  +V    D      G  +  L
Sbjct: 65  KKLNNYRLSGTTLYVTLEPC------TMCLGAIVHARISCIVFGAYDKKSGACGSCIDLL 118

Query: 120 SQKGI 124
           + +  
Sbjct: 119 NNRCF 123


>gi|21672527|ref|NP_660594.1| hypothetical protein BUsg246 [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25091621|sp|Q8K9R4|Y246_BUCAP RecName: Full=Uncharacterized protein BUsg_246
 gi|21623150|gb|AAM67805.1| hypothetical 20.0 kDa protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 151

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 57/154 (37%), Gaps = 25/154 (16%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTN--PSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57
           S+ D+ +M  AL+++         N    +  ++V    +IG G            HAE+
Sbjct: 3   SNRDSYWMKIALKYA----YYAEENGEVPIGAILVFQEKIIGTGWNSVISQNDSTAHAEI 58

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD---- 108
            AL EAG   +       T YVTL+PC        C   II   I+R+V      D    
Sbjct: 59  IALREAGRNIKNYRLVNTTLYVTLQPCMM------CCGAIINSRIKRLVFGASYKDLKKN 112

Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
             +    +     K  I   +M +E    L  + 
Sbjct: 113 PFLKKIFINLEKNKLKIKKHIMRNECAKILSNFF 146


>gi|258645306|ref|ZP_05732775.1| zinc-binding domain protein [Dialister invisus DSM 15470]
 gi|260402655|gb|EEW96202.1| zinc-binding domain protein [Dialister invisus DSM 15470]
          Length = 151

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 55/146 (37%), Gaps = 21/146 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA-- 63
           +MS A++ ++    LTS    +  +IV    VI               HAE+ A+++A  
Sbjct: 6   YMSLAMQEAKKA--LTSREIPIGAIIVLHDSVIAAAHNQCENRSDPTAHAEILAIKKASA 63

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-- 118
                   G + YVT+EPC      P CA   +   +  ++    +P         +   
Sbjct: 64  ILGNWRLTGCSLYVTIEPC------PMCAGAAVNAHLSSIIYGAPNPWYGGIDSKFRIVQ 117

Query: 119 --LSQKGIIVDRMMESEGKIFLHAYL 142
              +    ++  + +SE +  +  + 
Sbjct: 118 NPFNHAVSVIRGVCQSECQQLMDEFF 143


>gi|159028687|emb|CAO88158.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 143

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 47/121 (38%), Gaps = 22/121 (18%)

Query: 11  MSAALRFSRWH--VGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAEVQALEEA 63
           M  AL  +      G       V  +IV K G +I +G       +    HAE+ A+  A
Sbjct: 1   MQLALNLAATAGDRGDV----PVGAVIVDKQGHLIAQGANCKEKHHDPTAHAEILAIRAA 56

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                     G T YVTLEPC      P CA  II+  +  +V   DDP   V      +
Sbjct: 57  SQVLGNWHLNGCTLYVTLEPC------PMCAGAIIQARLGLLVYGADDPKTGVIRTVANF 110

Query: 119 L 119
           +
Sbjct: 111 M 111


>gi|117921416|ref|YP_870608.1| CMP/dCMP deaminase, zinc-binding [Shewanella sp. ANA-3]
 gi|117613748|gb|ABK49202.1| CMP/dCMP deaminase, zinc-binding [Shewanella sp. ANA-3]
          Length = 145

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 21/152 (13%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALE 61
            D  F+ AA+  ++   GL      +  ++V DG ++ RG       G    HAE+  LE
Sbjct: 1   MDE-FLQAAIDEAK--QGLAEGGIPIGSVLVIDGEIVARGHNKRVQQGSAVLHAEMDCLE 57

Query: 62  EAG----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            AG     + + AT Y TL PC        C+  I+  GI +VVV  +            
Sbjct: 58  NAGRLTAADYQKATLYSTLSPCDM------CSGAILLYGIPKVVVGENVTFQGPE----A 107

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           ++  +G+ V  +   E K  +H ++  + +  
Sbjct: 108 YVQSRGVEVTVVDNHECKQLMHDFIAAKPQLW 139


>gi|330998189|ref|ZP_08322015.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Paraprevotella xylaniphila YIT 11841]
 gi|329568881|gb|EGG50679.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Paraprevotella xylaniphila YIT 11841]
          Length = 144

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 52/147 (35%), Gaps = 17/147 (11%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
           + DA +M  AL  +R           V  ++V    ++ R      T      HAE+Q +
Sbjct: 2   ADDAFYMKKALEEARRA--YDEDEIPVGAVVVCGDRILARAHNLTETLTDATAHAEMQVI 59

Query: 61  EEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A     G      T YVTLEPC        CA  I    ++R+V    D         
Sbjct: 60  TAAANALGGKYLNECTLYVTLEPC------VMCAGAIGWAQVKRLVYGATDEKRGYKMFA 113

Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYL 142
            Q +  +  +V  +M  E    L  + 
Sbjct: 114 PQAIHPRTEVVSGVMADEAVALLKDFF 140


>gi|146339390|ref|YP_001204438.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bradyrhizobium sp. ORS278]
 gi|146192196|emb|CAL76201.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Bradyrhizobium sp. ORS278]
          Length = 239

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 5/122 (4%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLL 279
           ++LD   K+              V+++TE          R + ++ I+      DL ++L
Sbjct: 83  VVLDGQGKICWGRS--DIGGDPIVVVLTEAVSDAHLAGLRSEGVSYIFAGATSIDLPRVL 140

Query: 280 TIL-VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
            IL    GV  LL+EGG  V  +F+ + LVD + L     V G  G P   +    E + 
Sbjct: 141 DILSRELGVKRLLLEGGGHVNGTFLRAGLVDELNLVLCPAVDGAKGAPMVFDSSEAESDQ 200

Query: 339 MC 340
             
Sbjct: 201 RA 202


>gi|291165661|gb|EFE27710.1| cytidine/deoxycytidylate deaminase family protein [Filifactor
           alocis ATCC 35896]
          Length = 150

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 20/147 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
           +M  A R + +          V  +IVKD ++IGRG     T      HAE+ A+++A +
Sbjct: 4   YMEEAFREALYSYQ--KEEVPVGAVIVKDDVIIGRGHNVIETHQSSVCHAEMIAIQQAQK 61

Query: 66  EAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             R     GA  YVTLEPC        C   I+   +  + +   D +   +   +  + 
Sbjct: 62  HLRNWRLNGAKMYVTLEPCLM------CMGAILNSRLSELHIATRDFERGAAVSRVPLIL 115

Query: 121 QKGI---IVDRMMESEGKIFLHAYLTR 144
           +  I   ++  + + E   +L     R
Sbjct: 116 EDKIPNKLMVYLYDDETCTYLLKRFFR 142


>gi|312131614|ref|YP_003998954.1| cmp/dcmp deaminase zinc-binding protein [Leadbetterella byssophila
           DSM 17132]
 gi|311908160|gb|ADQ18601.1| CMP/dCMP deaminase zinc-binding protein [Leadbetterella byssophila
           DSM 17132]
          Length = 153

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 54/147 (36%), Gaps = 18/147 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAY----GGCPHAEVQALEE 62
             FM  AL  +            V  L+V DG  +IG+G            HAE+ AL  
Sbjct: 12  EYFMQKALTLAEEA--FDQGEIPVGALVVADGKTIIGKGYNQTEKLTDVTAHAEILALSA 69

Query: 63  AG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A      +  +  T YVTLEPC        CA  +    + R+V    D     S     
Sbjct: 70  ASQYLGAKYLKDCTLYVTLEPCMM------CAGALAWSQVSRIVFAASDEKRGFSLWEPS 123

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTR 144
            L  K  ++  ++ +E    L A+  R
Sbjct: 124 VLHPKTEVIKGVLANEAGALLKAFFRR 150


>gi|269126012|ref|YP_003299382.1| bifunctional deaminase-reductase domain-containing protein
           [Thermomonospora curvata DSM 43183]
 gi|268310970|gb|ACY97344.1| bifunctional deaminase-reductase domain protein [Thermomonospora
           curvata DSM 43183]
          Length = 240

 Score = 73.0 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 72/201 (35%), Gaps = 12/201 (5%)

Query: 132 SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191
            E    +  +          + + + +S D  +      S  + G         LRA +D
Sbjct: 6   PEPAARIDPFEEYGRVTGPWLRVGMVLSADGSVTDEQGWSDGLGGAADFAVFRTLRALAD 65

Query: 192 AILVGIGTVLADDPELTCRLN---------GLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           AI+VG  TV           +         G +  +P+ +++    +L     +  TA  
Sbjct: 66  AIVVGAATVRTGRVGPARLRDDLRPRRAALGKRGPAPI-VVVTRRAELDWRLPLF-TAAQ 123

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHS 301
            P ++VT         A           +  DL + +  L    G+  LL EGG  +A +
Sbjct: 124 TPTLVVTARSAAAAVPAHVPVIAVAETGEGLDLAEAVHRLREEHGLAHLLCEGGPHLAAA 183

Query: 302 FINSRLVDSIILYRSQIVIGE 322
            + + LVD + L  +  +IG 
Sbjct: 184 LLRAGLVDELCLNVAPTLIGG 204


>gi|326488167|dbj|BAJ89922.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 218

 Score = 73.0 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 51/139 (36%), Gaps = 30/139 (21%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
           MP ++    FM  AL  +++   L +    V C+IV++G VI  G            HAE
Sbjct: 37  MPATA----FMELALDQAKFA--LDNLEVPVGCVIVENGKVIASGSNRTNATRNATRHAE 90

Query: 57  VQALEE--------------AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           ++A++                 E+  G   YVT EPC        CA  +   GIR V  
Sbjct: 91  MEAIDVLLQEWQSIGLDQTLVAEKFAGCDLYVTCEPCIM------CASALSILGIREVYF 144

Query: 103 CVDDPDVRVSGRGLQWLSQ 121
              +      G  +     
Sbjct: 145 GCPNDKFGGCGSVMSLHES 163


>gi|108761212|ref|YP_632680.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Myxococcus xanthus DK 1622]
 gi|108465092|gb|ABF90277.1| RibD domain protein [Myxococcus xanthus DK 1622]
          Length = 235

 Score = 73.0 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 8/137 (5%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLL 279
           I LDP  KL    K         + I+TE          + K ++ ++      +L ++L
Sbjct: 89  IALDPTGKL--TWKFGSIDDEHVITILTEQVSDDYLAFLQSKGVSYLFGGKTELNLTRVL 146

Query: 280 TILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG---YLE 335
             L    G+  LL+EGG  +  SF+   L+D + +  + I  G  G PS  + G      
Sbjct: 147 EKLRKDFGIKRLLLEGGGKINGSFLAEDLIDELSVLVAPIADGSIGTPSLFDAGEGRGPA 206

Query: 336 KNFMCVRRDYFGSDVCL 352
           ++   V  +   SD+  
Sbjct: 207 RHLKLVSCEPRKSDMLW 223


>gi|15606234|ref|NP_213612.1| hypothetical protein aq_903 [Aquifex aeolicus VF5]
 gi|6226405|sp|O67050|TADA_AQUAE RecName: Full=tRNA-specific adenosine deaminase
 gi|2983443|gb|AAC07025.1| hypothetical protein aq_903 [Aquifex aeolicus VF5]
          Length = 151

 Score = 73.0 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 17/123 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
             F+  ALR ++           V  +IVK+G +I +   +         HAE+ A++EA
Sbjct: 4   EYFLKVALREAKRA--FEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEA 61

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                     G   YVTLEPC        C+  ++   I +V+    D            
Sbjct: 62  CRRLNTKYLEGCELYVTLEPCIM------CSYALVLSRIEKVIFSALDKKHGGVVSVFNI 115

Query: 119 LSQ 121
           L +
Sbjct: 116 LDE 118


>gi|255007771|ref|ZP_05279897.1| putative deoxycytidylate deaminase [Bacteroides fragilis 3_1_12]
 gi|313145475|ref|ZP_07807668.1| deoxycytidylate deaminase [Bacteroides fragilis 3_1_12]
 gi|313134242|gb|EFR51602.1| deoxycytidylate deaminase [Bacteroides fragilis 3_1_12]
          Length = 145

 Score = 73.0 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 43/154 (27%), Positives = 58/154 (37%), Gaps = 38/154 (24%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
             S  D R++  A   + W          V  LIVKD ++I  G     G P        
Sbjct: 7   KQSDLDKRYIRMA---AIWSENSYCQRRKVGALIVKDKMIISDGY---NGTPSGFENICE 60

Query: 54  -----------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                      HAE  A   +  +   + GAT YVT  PC        CA+ II+ GI+R
Sbjct: 61  DDNNVTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CAKLIIQAGIKR 114

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
           VV             G++ L + GI V  +  SE
Sbjct: 115 VVYSEHYRL----EDGIELLKRAGIEVVFVDTSE 144


>gi|194335892|ref|YP_002017686.1| CMP/dCMP deaminase zinc-binding [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308369|gb|ACF43069.1| CMP/dCMP deaminase zinc-binding [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 155

 Score = 73.0 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 59/153 (38%), Gaps = 24/153 (15%)

Query: 6   FDARF-MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG----CPHAEVQA 59
            D  + M  A R +            V  +++  +G VIGRG            HAE+ A
Sbjct: 2   MDFAYCMELAFREAIKA--FERKEVPVGAVVLDSNGHVIGRGYNQVEALCDSTAHAEMIA 59

Query: 60  LEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           L  A      +     T  VTLEPC      P CA  I+   + RV+    DP +  +G 
Sbjct: 60  LTSAMATLGSKYLNDCTLAVTLEPC------PMCAGAIVNAKVGRVIFGAYDPKMGAAGT 113

Query: 115 GLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
            +       L+ +  +   +ME++ +  L  + 
Sbjct: 114 VMNVTGSRQLNHQPEVFGGIMENKCRNLLQDFF 146


>gi|307544360|ref|YP_003896839.1| cytosine deaminase [Halomonas elongata DSM 2581]
 gi|307216384|emb|CBV41654.1| cytosine deaminase [Halomonas elongata DSM 2581]
          Length = 152

 Score = 73.0 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 20/149 (13%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQALEEAG 64
            FM AAL  +R   GL      +  ++V  G+++G G       G    H E+ ALE AG
Sbjct: 3   HFMQAALDEAR--AGLDEGGIPIGSVLVHRGVILGGGRNRRVQLGSTVLHGEMDALENAG 60

Query: 65  EEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            ++    R +T Y TL PC+       C   I+  GI RVV+  +   +         L 
Sbjct: 61  RQSADIYRESTLYTTLSPCAM------CTGAILLYGIPRVVIGENRTFLGEE----ALLR 110

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
             G+ V+ + E E    +  +++   +  
Sbjct: 111 SHGVEVEVLQEPECIALMEDFISASPDLW 139


>gi|83647619|ref|YP_436054.1| cytosine/adenosine deaminases [Hahella chejuensis KCTC 2396]
 gi|83635662|gb|ABC31629.1| Cytosine/adenosine deaminases [Hahella chejuensis KCTC 2396]
          Length = 156

 Score = 73.0 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 15/102 (14%)

Query: 30  SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  ++V+DG V+G G       +    HAE+ A+ +A          G+T YVTLEPC 
Sbjct: 18  PVGAILVRDGQVLGEGWNQPIRSHDPTAHAEISAIRKASAVAGNYRLPGSTLYVTLEPC- 76

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                  C   ++   + R+V    +          + L + 
Sbjct: 77  -----VMCLGALVHARVSRLVFGAYEHKAGAVCSSSRLLDEH 113


>gi|70990810|ref|XP_750254.1| cytosine deaminase [Aspergillus fumigatus Af293]
 gi|119496775|ref|XP_001265161.1| cytosine deaminase, putative [Neosartorya fischeri NRRL 181]
 gi|66847886|gb|EAL88216.1| cytosine deaminase, putative [Aspergillus fumigatus Af293]
 gi|119413323|gb|EAW23264.1| cytosine deaminase, putative [Neosartorya fischeri NRRL 181]
 gi|159130729|gb|EDP55842.1| cytosine deaminase, putative [Aspergillus fumigatus A1163]
          Length = 148

 Score = 73.0 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 61/154 (39%), Gaps = 22/154 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCPHAEVQA 59
             DA F++ AL  ++           +   +V KDG ++GRG            HAE+ A
Sbjct: 2   ETDAGFIA-ALEEAKKGAAEGGV--PIGAALVSKDGKILGRGHNMRVQKGSATLHAEMSA 58

Query: 60  LEEAGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           LE +G        GAT Y TL PC        C    I   ++RVV+  +   +      
Sbjct: 59  LENSGRLPASAYEGATMYTTLSPCDM------CTGACILYKVKRVVIGENKNFMGGE--- 109

Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            ++L  +G  V  +   E K  +  ++  + E  
Sbjct: 110 -EYLLNRGKEVVVLDNEECKQLMEKFIKEKPELW 142


>gi|332880818|ref|ZP_08448489.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681201|gb|EGJ54127.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 144

 Score = 73.0 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 53/147 (36%), Gaps = 17/147 (11%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
           + DA +M  AL  +R         P V  ++V    ++ R      T      HAE+Q +
Sbjct: 2   ATDAFYMKKALEEARRA-YEEDEIP-VGAVVVCGDRILARAHNLTETLTDVTAHAEMQVI 59

Query: 61  EEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A     G      T YVTLEPC        CA  I    ++R+V    D         
Sbjct: 60  TAAANALGGKYLNECTLYVTLEPC------VMCAGAIGWAQVKRLVYGATDEKRGYRMFA 113

Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYL 142
            Q +  +  +V  +M  E    L  + 
Sbjct: 114 PQAIHPRTEVVSGVMADESMALLKDFF 140


>gi|255580984|ref|XP_002531310.1| tRNA-specific adenosine deaminase subunit TAD2, putative [Ricinus
           communis]
 gi|223529101|gb|EEF31082.1| tRNA-specific adenosine deaminase subunit TAD2, putative [Ricinus
           communis]
          Length = 223

 Score = 73.0 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 48/136 (35%), Gaps = 26/136 (19%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
           SS    +M  AL  +R    L S    V C+IV+DG VI  G            HAE++A
Sbjct: 40  SSETFAYMELALEQARHA--LDSLEVPVGCVIVEDGKVIASGRNRTTETRNATRHAEMEA 97

Query: 60  LE--------------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           ++              E  E+      YVT EPC        CA  +   GI  V     
Sbjct: 98  IDVLLEQWQKGGLSVSEVAEKFSKCVLYVTCEPCIM------CAAALSILGIEEVYYGCA 151

Query: 106 DPDVRVSGRGLQWLSQ 121
           +      G  L   S 
Sbjct: 152 NDKFGGCGSILPLHSS 167


>gi|188996445|ref|YP_001930696.1| CMP/dCMP deaminase zinc-binding [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931512|gb|ACD66142.1| CMP/dCMP deaminase zinc-binding [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 149

 Score = 73.0 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 19/111 (17%)

Query: 8   ARFMSAALRFSRWHVGLTSTN-PSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
            +F+  A++ +   +     N   V  +IVKDG +I +             HAE+ A+E+
Sbjct: 5   KKFIDQAVKEAEKAL---KKNEVPVGAVIVKDGKIISKAHNQRISKNNALYHAEILAIEK 61

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           + ++ +      A  Y TLEPC        CA  +++  I++VV C  D  
Sbjct: 62  SCKKLKTWRLDDAVLYTTLEPCLM------CAGAVMQARIKKVVFCAKDEK 106


>gi|74317234|ref|YP_314974.1| tRNA-adenosine deaminase [Thiobacillus denitrificans ATCC 25259]
 gi|74056729|gb|AAZ97169.1| probable cytosine/adenosine deaminases [Thiobacillus denitrificans
           ATCC 25259]
          Length = 151

 Score = 73.0 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 46/127 (36%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
            V  L+V  G ++GRG            HAEV AL +A          G T YVT+EPC 
Sbjct: 18  PVGALVVCGGEIVGRGYNRPISSFDPTAHAEVMALRDAAARLGNYRLVGCTLYVTMEPC- 76

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGK 135
                  CA  I+   I RVV    +      G  +   ++        +   ++  E  
Sbjct: 77  -----VMCAGAILHARIARVVYGAREYKTGAHGSIVDVFAEPRLNFHCEVEGGVLADECA 131

Query: 136 IFLHAYL 142
             +  + 
Sbjct: 132 ATISGFF 138


>gi|312129766|ref|YP_003997106.1| cmp/dcmp deaminase zinc-binding protein [Leadbetterella byssophila
           DSM 17132]
 gi|311906312|gb|ADQ16753.1| CMP/dCMP deaminase zinc-binding protein [Leadbetterella byssophila
           DSM 17132]
          Length = 152

 Score = 73.0 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 53/154 (34%), Gaps = 38/154 (24%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M    FD  FM  A++ ++    + +    V  ++V D  +I  G               
Sbjct: 1   MDKPKFDDIFMDLAIQLAKRSHCVRA---QVGAVLVNDTRIISIGYNGPPAGTHNCDDEF 57

Query: 54  -----------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFII 93
                            HAE  A+  A   G    G+T YVTL PC        CA+ I 
Sbjct: 58  GEQGCPRDSKGSCSLALHAEQNAILYATKNGANVEGSTLYVTLSPCI------ACARVIF 111

Query: 94  ECGIRRVVV--CVDDPDVRVSGRGLQWLSQKGII 125
              I++V       +     S  G+ +L + GI 
Sbjct: 112 SMKIKKVFYLNSYAEYKGLSSDEGVDFLRRFGIE 145


>gi|67922696|ref|ZP_00516200.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
           [Crocosphaera watsonii WH 8501]
 gi|67855478|gb|EAM50733.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
           [Crocosphaera watsonii WH 8501]
          Length = 165

 Score = 73.0 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 57/149 (38%), Gaps = 23/149 (15%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRG--VTAYGGCP--HAEVQALEEA 63
            +M  AL   +      + +  V  +I+   G +I +G         P  HAE+ A+ +A
Sbjct: 14  YWMKQALNLGQEAA--KAGDVPVGAVIIDSQGKLIAQGLNCKEQNHDPTAHAEIIAIRQA 71

Query: 64  GEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            ++         T YVTLEPC        CA  II   +  +V  VDDP        L  
Sbjct: 72  TQKLHSWYLNKCTLYVTLEPCIM------CAGAIIHSRLGLLVYGVDDPKSGTIRSVLNL 125

Query: 119 LSQKG-----IIVDRMMESEGKIFLHAYL 142
                      ++  ++E+E +  L  + 
Sbjct: 126 PDSAASNHRLSVLSGILEAECRQQLQDWF 154


>gi|288905614|ref|YP_003430836.1| guanine deaminase [Streptococcus gallolyticus UCN34]
 gi|288732340|emb|CBI13910.1| putative guanine deaminase [Streptococcus gallolyticus UCN34]
          Length = 154

 Score = 73.0 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 16/110 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
             +M  A++ +   +      P    +IVK+G ++  G       +    H EV A+ +A
Sbjct: 3   EDYMQKAIQEAYDGIKKGDGGP-FGSVIVKNGEIVASGHNMVLAHHDPTAHGEVTAIRKA 61

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           GE     +  G T + T EPC      P C    +   I +V       D
Sbjct: 62  GEKLGTHDLSGTTLFTTGEPC------PMCLAACLWANIDKVYYGCTIAD 105


>gi|332519171|ref|ZP_08395638.1| CMP/dCMP deaminase, zinc-binding [Lacinutrix algicola 5H-3-7-4]
 gi|332045019|gb|EGI81212.1| CMP/dCMP deaminase, zinc-binding [Lacinutrix algicola 5H-3-7-4]
          Length = 149

 Score = 73.0 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 17/150 (11%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
            D  FM  AL+ +   V        V  +IV +  +I R             HAE+QA+ 
Sbjct: 6   DDNYFMKKALQEAE--VAFDKGEIPVGAVIVIENRIIARAHNLTELLNDVTAHAEMQAIT 63

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A     G+  +  T YVTLEPC        CA  +    + ++V    D +        
Sbjct: 64  AAANFLGGKYLKNCTLYVTLEPCQM------CAGALYWSQVSKIVYGARDEERGCINLQT 117

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQV 146
           +   +  +    + +    +    ++ ++ 
Sbjct: 118 KLHPKTKLEGGILAKEASSLMKRFFIEKRN 147


>gi|312870914|ref|ZP_07731019.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus iners LEAF 3008A-a]
 gi|311093604|gb|EFQ51943.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus iners LEAF 3008A-a]
          Length = 158

 Score = 73.0 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 54/165 (32%), Gaps = 23/165 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHA 55
           M       R M  A   +            +  +IV  +G +IGRG            HA
Sbjct: 1   MFAKEEKERIMKLAFLEADKAEQQ--GEIPIGAVIVDAEGNLIGRGYNRRELDEDATRHA 58

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A++EA +          + +VTLEPC      P CA  II   ++ V     DP   
Sbjct: 59  EIIAIQEACKNLNSWRLIDCSLFVTLEPC------PMCAGAIINARLKNVYYGAFDPKAG 112

Query: 111 VSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
             G  +   +         I   +   +    L  +     ++  
Sbjct: 113 ACGSVVDLFAFTKFNHHPQIFGGLYREQAAQQLKNFFKNIRQQNR 157


>gi|149174160|ref|ZP_01852788.1| Cytosine deaminase [Planctomyces maris DSM 8797]
 gi|148847140|gb|EDL61475.1| Cytosine deaminase [Planctomyces maris DSM 8797]
          Length = 145

 Score = 73.0 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 17/109 (15%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALE 61
            D  FM AA+  +    G  +    +  ++V +G +IGRG            H E+ ALE
Sbjct: 1   MDE-FMQAAIEEAEK--GRDAGGVPIGSVLVYEGKIIGRGHNQRQQKGSAILHGEMSALE 57

Query: 62  EAGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           +AG +     R +  Y TL PC      P C+  I    I RVV+  + 
Sbjct: 58  DAGRQPARVYRNSVIYTTLSPC------PMCSGAIRLYQIPRVVIGENQ 100


>gi|262384379|ref|ZP_06077514.1| deoxycytidylate deaminase [Bacteroides sp. 2_1_33B]
 gi|262294082|gb|EEY82015.1| deoxycytidylate deaminase [Bacteroides sp. 2_1_33B]
          Length = 144

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 58/148 (39%), Gaps = 32/148 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC------------ 52
             D R++  A   + W          V  L+VKD ++I  G                   
Sbjct: 10  ELDKRYLRMA---AIWAENSYCKRRQVGALLVKDKMIISDGYNGTPAGFENVCEDENNVT 66

Query: 53  ----PHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE  A+     +   ++GAT YVT  PC        CA+ II+ GI+RVV   D
Sbjct: 67  KPYVLHAEANAITKVAASSNSSKGATIYVTSSPCIE------CAKLIIQSGIKRVVYSED 120

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESE 133
                    G + L + GIIVD +  +E
Sbjct: 121 YRIA----DGCELLKRAGIIVDYIDLNE 144


>gi|20089036|ref|NP_615111.1| dCMP deaminase [Methanosarcina acetivorans C2A]
 gi|19913893|gb|AAM03591.1| dCMP deaminase [Methanosarcina acetivorans C2A]
          Length = 150

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 54/158 (34%), Gaps = 43/158 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S D  F+  A   ++    L +   +V  +IV+D  ++  G                   
Sbjct: 6   SLDEYFLEIAFVVAKRATCLRN---NVGAVIVRDKRILSTGYNGAPSGLEHCLDIGCIRE 62

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G    GAT Y T +PC        CA+ II 
Sbjct: 63  LEKIPSGTRHEKCRAVHAEQNAIIQAAIHGVSISGATIYCTHQPCI------LCAKMIIN 116

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
             I+RVV     PD       L +    G+ V+ +   
Sbjct: 117 SNIKRVVYSTPYPDT----DSLDFFRSAGVEVECLPLE 150


>gi|209886356|ref|YP_002290213.1| tRNA-specific adenosine deaminase [Oligotropha carboxidovorans OM5]
 gi|209874552|gb|ACI94348.1| tRNA-specific adenosine deaminase [Oligotropha carboxidovorans OM5]
          Length = 181

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 57/147 (38%), Gaps = 22/147 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEA-- 63
           FM  ALR ++      +    + C++V++G VI     R +T      HAE+ AL EA  
Sbjct: 39  FMDLALRQAQNAE--ANGEVPIGCVVVQNGTVIAAAGNRTITDRDPTAHAEMLALREAAS 96

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-- 118
               E       YVTLEPC        CA  I    IRR+     DP       G+++  
Sbjct: 97  KLGRERLADCDLYVTLEPC------TMCAGAISHARIRRLYYGALDPKGGAIDSGVRFFA 150

Query: 119 ---LSQKGIIVDRMMESEGKIFLHAYL 142
                    +   + E+E    L  + 
Sbjct: 151 QPTCHHVPEVYSAVGEAEAAALLRDFF 177


>gi|329570031|gb|EGG51786.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Enterococcus faecalis TX1467]
          Length = 144

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 20/129 (15%)

Query: 30  SVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            +  +IV+ G +IGRG            HAE+ A++EA              +VTLEPC 
Sbjct: 5   PIGAVIVRQGEIIGRGHNLREARQEATAHAEMYAIQEACRGIENWRLEETQLFVTLEPC- 63

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS-----QKGIIVDRMMESEGK 135
                P C+  ++   I  V     DP    +G  +  L          +   ++E E +
Sbjct: 64  -----PMCSGAMLLARIPEVYYGATDPKAGTAGTLMNLLEDERFNHVAYVEAGVLEEECR 118

Query: 136 IFLHAYLTR 144
           + L  +  +
Sbjct: 119 LLLVQFFKK 127


>gi|332162680|ref|YP_004299257.1| tRNA-specific adenosine deaminase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666910|gb|ADZ43554.1| tRNA-specific adenosine deaminase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860305|emb|CBX70619.1| tRNA-specific adenosine deaminase [Yersinia enterocolitica W22703]
          Length = 196

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 15/104 (14%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
            V  ++V D  VIG G            HAE+ AL + G+  +      AT YVTLEPC 
Sbjct: 53  PVGAILVLDNQVIGEGWNRPIRDNDPTAHAEIMALRQGGQVVQNYRLIDATLYVTLEPC- 111

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                  CA  ++   IRR+V   +D     +G  +  L   G+
Sbjct: 112 -----VMCAGAMVHSRIRRLVYGANDLKTGAAGSLVDILRHPGM 150


>gi|119775487|ref|YP_928227.1| cytidine/deoxycytidylate deaminase family protein [Shewanella
           amazonensis SB2B]
 gi|119767987|gb|ABM00558.1| tRNA-adenosine deaminase [Shewanella amazonensis SB2B]
          Length = 190

 Score = 72.6 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 63/173 (36%), Gaps = 22/173 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
           +  +  D  FMS                  V  ++V++G+VI  G     G      HAE
Sbjct: 21  LQQTELDKHFMSL--ALEAAKEAEARGEVPVGAVLVREGLVIATGYNHNIGLNDPSAHAE 78

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +Q L EAG           T YVTLEPC+       CA  ++   I R+V    D     
Sbjct: 79  MQCLREAGRMLGNYRLLDTTLYVTLEPCAM------CAGVMVHSRIERLVFGAKDEKTGA 132

Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
           +G  +  +          + + ++  E    L  +  R+ +++  +      +
Sbjct: 133 AGSVVDLVRHPAFNHQIQVEEGVLAEECSGMLSDFFRRRRKEQKALKQAARDT 185


>gi|318606786|emb|CBY28284.1| tRNA-specific adenosine-34 deaminase [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 183

 Score = 72.6 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 15/104 (14%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
            V  ++V D  VIG G            HAE+ AL + G+  +      AT YVTLEPC 
Sbjct: 40  PVGAILVLDNQVIGEGWNRPIRDNDPTAHAEIMALRQGGQVVQNYRLIDATLYVTLEPC- 98

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                  CA  ++   IRR+V   +D     +G  +  L   G+
Sbjct: 99  -----VMCAGAMVHSRIRRLVYGANDLKTGAAGSLVDILRHPGM 137


>gi|312129827|ref|YP_003997167.1| cmp/dcmp deaminase zinc-binding protein [Leadbetterella byssophila
           DSM 17132]
 gi|311906373|gb|ADQ16814.1| CMP/dCMP deaminase zinc-binding protein [Leadbetterella byssophila
           DSM 17132]
          Length = 168

 Score = 72.6 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 42/113 (37%), Gaps = 24/113 (21%)

Query: 10  FMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
           FM  A+  S    +   GL      + C+IV++G +IG G            H E+ A+E
Sbjct: 13  FMLKAIELSEIAYKSGKGL-----PIGCVIVRNGEIIGEGHNEIFERVNPTSHGEMVAIE 67

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
            A       +      Y TLEPC      P C   I    I +V     + D 
Sbjct: 68  RACRNINSLQLSECQMYTTLEPC------PMCLGAIYWAKINKVYFANTNADA 114


>gi|270285018|ref|ZP_06194412.1| cytidine/deoxycytidylate deaminase family protein [Chlamydia
           muridarum Nigg]
 gi|270289043|ref|ZP_06195345.1| cytidine/deoxycytidylate deaminase family protein [Chlamydia
           muridarum Weiss]
          Length = 148

 Score = 72.6 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 50/151 (33%), Gaps = 21/151 (13%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE- 65
           M  AL  +R    L      V C+IV+   +I RG  +         HAE+  +  A E 
Sbjct: 1   MKKALDEARKAYELDEV--PVGCIIVQGDAIIARGHNSVERLKDPTAHAEMICISAAAEY 58

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                 +  T Y TLEPC        CA  I    I R+V    D  +   G  L     
Sbjct: 59  LQNWRLKDTTLYCTLEPCLM------CAGAIQLARIPRIVWGAPDLRLGAGGSWLNVF-- 110

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKRSHI 152
             +      + E    +    +  + K    
Sbjct: 111 --LEKHPFHQVECCPGICHQESEWLMKNFFW 139


>gi|78186386|ref|YP_374429.1| cytosine deaminase, putative [Chlorobium luteolum DSM 273]
 gi|78166288|gb|ABB23386.1| tRNA-adenosine deaminase [Chlorobium luteolum DSM 273]
          Length = 153

 Score = 72.6 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 58/149 (38%), Gaps = 23/149 (15%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGV----TAYGGCPHAEVQALEEA 63
            FM  A R +R      +    V  +++     V+GRG     T      HAE+ AL  A
Sbjct: 5   YFMELAFREARKA--FEAGEVPVGAVVLDASSHVVGRGYNQVETLSDATAHAEIIALTAA 62

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ- 117
                 +     T  VTLEPC      P CA  I+   + RVV    DP +  +G  L  
Sbjct: 63  MATLGNKYLNDCTLVVTLEPC------PMCAGAIVNAKVGRVVFGAYDPKMGAAGSVLNV 116

Query: 118 ----WLSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   +ME+  +  L  + 
Sbjct: 117 TGCRALNHQPEVFGGIMEARAQGLLQDFF 145


>gi|42520340|ref|NP_966255.1| cytidine and deoxycytidylate deaminase family protein [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|42410078|gb|AAS14189.1| cytidine and deoxycytidylate deaminase family protein [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 135

 Score = 72.6 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 14/140 (10%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEA--GEEA 67
           M  A+  ++      +    +  +IV    +I      +     HAE+ A+ +A      
Sbjct: 1   MELAIEQAKLAQ--KNDEVPIGAVIVSGDNIISSAHNISSDPTAHAEMLAIRQAFSTPTL 58

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD---VRVSGRGLQWLSQKGI 124
             A  YVTLEPC      P CAQ I    I+R+     +P    +    +  Q+ S    
Sbjct: 59  CDADMYVTLEPC------PMCAQAISFARIKRLYFGAYNPKGGGIENGAKIFQFCSHIPE 112

Query: 125 IVDRMMESEGKIFLHAYLTR 144
           +   ++E E    L  +  +
Sbjct: 113 VYGGILEIECSFLLKDFFEK 132


>gi|259501366|ref|ZP_05744268.1| tRNA-specific adenosine deaminase [Lactobacillus iners DSM 13335]
 gi|302190913|ref|ZP_07267167.1| hypothetical protein LineA_02730 [Lactobacillus iners AB-1]
 gi|309808233|ref|ZP_07702142.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus iners LactinV 01V1-a]
 gi|312872162|ref|ZP_07732235.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus iners LEAF 2062A-h1]
 gi|312873556|ref|ZP_07733603.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus iners LEAF 2052A-d]
 gi|312875738|ref|ZP_07735733.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus iners LEAF 2053A-b]
 gi|325912947|ref|ZP_08175321.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus iners UPII 60-B]
 gi|259167219|gb|EEW51714.1| tRNA-specific adenosine deaminase [Lactobacillus iners DSM 13335]
 gi|308168521|gb|EFO70630.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus iners LactinV 01V1-a]
 gi|311088730|gb|EFQ47179.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus iners LEAF 2053A-b]
 gi|311090809|gb|EFQ49206.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus iners LEAF 2052A-d]
 gi|311092246|gb|EFQ50617.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus iners LEAF 2062A-h1]
 gi|325477761|gb|EGC80899.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus iners UPII 60-B]
          Length = 158

 Score = 72.6 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 54/165 (32%), Gaps = 23/165 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHA 55
           M       + M  A   +            +  +IV  +G +IGRG            HA
Sbjct: 1   MFAKEEKEKIMKLAFLEADKAEQQ--GEIPIGAVIVDAEGNLIGRGYNRRELDEDATRHA 58

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A++EA +          + +VTLEPC      P CA  II   ++ V     DP   
Sbjct: 59  EIIAIQEACKNLNSWRLIDCSLFVTLEPC------PMCAGAIINARLKNVYYGAFDPKAG 112

Query: 111 VSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
             G  +   +         I   +   +    L  +     ++  
Sbjct: 113 ACGSVVDLFAFTKFNHHPQIFGGLYREQAAQQLKNFFKNIRQQNR 157


>gi|326336121|ref|ZP_08202293.1| cytidine/deoxycytidylate deaminase [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325691630|gb|EGD33597.1| cytidine/deoxycytidylate deaminase [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 150

 Score = 72.6 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 58/153 (37%), Gaps = 32/153 (20%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-----------YGGCP- 53
           +D  +M  A  +++           V  +IVKD ++I  G                G   
Sbjct: 7   YDRAYMRMAQEWAKLSYSQRK---QVGAIIVKDRMIISDGYNGTPTGFDNCCEDEQGQTL 63

Query: 54  ----HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               HAE  A+     + +   GAT Y+T+ PC        C++ I + GI RVV     
Sbjct: 64  WYVLHAEANAILKVAASTQSCAGATLYITMSPCKE------CSKLIHQAGIIRVVY---- 113

Query: 107 PDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
            +      GL +L++ G+ +  +  S  +    
Sbjct: 114 KEAYKDTSGLDFLAKAGVELVYLPCSLHEEVHE 146


>gi|302037080|ref|YP_003797402.1| tRNA-specific adenosine deaminase [Candidatus Nitrospira defluvii]
 gi|300605144|emb|CBK41477.1| tRNA-specific adenosine deaminase [Candidatus Nitrospira defluvii]
          Length = 162

 Score = 72.6 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 43/157 (27%), Positives = 62/157 (39%), Gaps = 22/157 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           +P+   D RFM  AL  +R    L    P +A L+V +GIVI +      T      HAE
Sbjct: 2   LPLDDPDTRFMQQALTLARSA-PLIGEVP-IAALLVHEGIVIAQAHNLRETRQDPTAHAE 59

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           V  +++A            T YVTLEPC        C   I+   I R+V    DP    
Sbjct: 60  VIVIQDAARHMGSWRLINTTLYVTLEPC------TMCIGAIVLARIPRLVFAATDPKAGA 113

Query: 112 SGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLT 143
            G  +       L+ +  +V  +   E +  L  +  
Sbjct: 114 CGSIMNIPPEPRLNHRVEVVGGVCAEESQALLQDFFQ 150


>gi|237784829|ref|YP_002905534.1| putative cytosine/adenosine deaminase [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237757741|gb|ACR16991.1| putative cytosine/adenosine deaminase [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 163

 Score = 72.6 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 53/155 (34%), Gaps = 28/155 (18%)

Query: 8   ARFMSAALRFSRWHVGLTST-NPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALE 61
            R+M  AL  ++     T   +  V  ++V   G V+G G            HAEV AL 
Sbjct: 16  ERWMQMALDVAKR----TPPGDVPVGAVVVDASGHVVGEGCNERESTGDPTAHAEVIALR 71

Query: 62  EA------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            A      G      T  VTLEPC        CA   +   I  ++    +P     G  
Sbjct: 72  AAAREVGDGWRLENHTLVVTLEPC------VMCAGAAVTSRIGGIIFGAYEPKTGACGSV 125

Query: 116 LQWLSQKG------IIVDRMMESEGKIFLHAYLTR 144
           +  +           +   ++E E +  +  +  R
Sbjct: 126 IDVVRDPAWPFPTVDVRGGVLERECQDLVEEFFAR 160


>gi|187934949|ref|YP_001887626.1| tRNA-specific adenosine deaminase [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723102|gb|ACD24323.1| tRNA-specific adenosine deaminase [Clostridium botulinum B str.
           Eklund 17B]
          Length = 152

 Score = 72.6 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 21/146 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
           F+  A   +R  +  +     +  +IVKD IVI +      T      HAE+ A+ +A +
Sbjct: 3   FLDIAKEEARIAM--SKGEVPIGAVIVKDDIVISKAHNLKETLKDATAHAEILAIRKAAK 60

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                  +G   YVTLEPCS       CA  II+  I ++ +   + D+   G  +  + 
Sbjct: 61  FLGDWRLKGTEMYVTLEPCSM------CASAIIQSRISKLHIGTFNKDMGACGSVINLID 114

Query: 121 QKGIIV----DRMMESEGKIFLHAYL 142
            + +      + + + E    L  + 
Sbjct: 115 DRQLESFLNVNWLYDEECSNLLMKFF 140


>gi|172060929|ref|YP_001808581.1| CMP/dCMP deaminase zinc-binding [Burkholderia ambifaria MC40-6]
 gi|171993446|gb|ACB64365.1| CMP/dCMP deaminase zinc-binding [Burkholderia ambifaria MC40-6]
          Length = 159

 Score = 72.6 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 47/127 (37%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
            V  ++V    VI RG     G      HAE+ AL  A +  +     G   YVTLEPC 
Sbjct: 18  PVGAVLVCGDEVIARGFNHPIGGHDPSAHAEMAALRMAAQHLQNYRMPGCELYVTLEPCL 77

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  CA  I+   I RVV    DP     G  +       L+    +   ++  E  
Sbjct: 78  M------CAGAIMHARIARVVYGAADPKTGACGSVIDAFANPQLNHHTEVTGGVLADECG 131

Query: 136 IFLHAYL 142
             L ++ 
Sbjct: 132 AALKSFF 138


>gi|171320346|ref|ZP_02909387.1| CMP/dCMP deaminase zinc-binding [Burkholderia ambifaria MEX-5]
 gi|171094424|gb|EDT39487.1| CMP/dCMP deaminase zinc-binding [Burkholderia ambifaria MEX-5]
          Length = 159

 Score = 72.6 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 47/127 (37%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
            V  ++V    VI RG     G      HAE+ AL  A +  +     G   YVTLEPC 
Sbjct: 18  PVGAVLVCGDEVIARGFNHPIGGHDPSAHAEMAALRMAAQHLQNYRMPGCELYVTLEPCL 77

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  CA  I+   I RVV    DP     G  +       L+    +   ++  E  
Sbjct: 78  M------CAGAIMHARIARVVYGAADPKTGACGSVIDAFANPQLNHHTEVTGGVLADECG 131

Query: 136 IFLHAYL 142
             L ++ 
Sbjct: 132 AALKSFF 138


>gi|315653116|ref|ZP_07906041.1| tRNA-specific adenosine deaminase [Lactobacillus iners ATCC 55195]
 gi|315489481|gb|EFU79118.1| tRNA-specific adenosine deaminase [Lactobacillus iners ATCC 55195]
          Length = 158

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 54/165 (32%), Gaps = 23/165 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHA 55
           M       + M  A   +            +  +IV  +G +IGRG            HA
Sbjct: 1   MFAKEEKEKIMKLAFLEADKAEKQ--GEIPIGAVIVDAEGNLIGRGYNRRELDEDATRHA 58

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A++EA +          + +VTLEPC      P CA  II   ++ V     DP   
Sbjct: 59  EIIAIQEACKNLNSWRLIDCSLFVTLEPC------PMCAGAIINARLKNVYYGAFDPKAG 112

Query: 111 VSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
             G  +   +         I   +   +    L  +     ++  
Sbjct: 113 ACGSVVDLFAFTKFNHHPQIFGGLYREQAAQQLKNFFKNIRQQNR 157


>gi|295835890|ref|ZP_06822823.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sp. SPB74]
 gi|295825757|gb|EFG64457.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sp. SPB74]
          Length = 250

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 64/164 (39%), Gaps = 13/164 (7%)

Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD--DPELTCRLNGLQEHSPMRI--- 222
              S  I+G        +LRA +D ++VG GTV A+   P            +  +    
Sbjct: 57  DGRSQGISGPADMRVFGVLRALADVVVVGAGTVRAEGYRPAKAREAFAAAREAAGQAPAA 116

Query: 223 ---ILDPHFKLSLDSKIIKTALLAPVIIVTENDDP-VLALAFRKKNINIIYC---DCRDL 275
              ++     L   + +  TA + P +++T  D P     A ++    ++        D 
Sbjct: 117 AIAVVSATLDLDFTTPLF-TAPVVPTLVLTGADAPAERVAAAKEAGAEVVVTGPGPGADP 175

Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
            ++  +L  RG+   L EGG  +  + I +  VD + L  S  +
Sbjct: 176 GRVRAVLAARGLRRQLAEGGPHLLGTLIAADAVDELCLTVSPFL 219


>gi|94496883|ref|ZP_01303457.1| Putative cytosine/adenosine deaminase [Sphingomonas sp. SKA58]
 gi|94423559|gb|EAT08586.1| Putative cytosine/adenosine deaminase [Sphingomonas sp. SKA58]
          Length = 175

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 16/117 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           +   D+++M  A+  +R   G +  +  +A +IV DG V+ +GV           HAE+ 
Sbjct: 13  MDETDSKWMQRAIDLAR-SKGSSPQDTPIAAIIVLDGAVLAQGVNETDERCDATAHAEMM 71

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           A   AG+     + RGAT Y TL+PC        C    I   I R+V      DV 
Sbjct: 72  AFRAAGQVHGDMDLRGATLYSTLQPCGM------CTMASIWTKIGRIVYGAGRDDVH 122


>gi|325281446|ref|YP_004253988.1| CMP/dCMP deaminase zinc-binding protein [Odoribacter splanchnicus
           DSM 20712]
 gi|324313255|gb|ADY33808.1| CMP/dCMP deaminase zinc-binding protein [Odoribacter splanchnicus
           DSM 20712]
          Length = 145

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 49/144 (34%), Gaps = 17/144 (11%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             +M  AL+ +R           V  ++V  G +I R             HAE+ A+  A
Sbjct: 5   EYYMHKALQEARQAA--EEGEIPVGAVVVCKGKIIARAHNETEKLNDVTAHAEMLAITMA 62

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                G+     T YVT+EPC        CA  +    +  +V    DP    S      
Sbjct: 63  TSYLGGKYLNECTLYVTMEPC------TMCAGALSWAQLGELVTGAPDPHRGYSRLTPPV 116

Query: 119 LSQKGIIVDRMMESEGKIFLHAYL 142
           L  K  I   ++  E    +  + 
Sbjct: 117 LHPKTRITSGILTGECSEIVKQFF 140


>gi|313124289|ref|YP_004034548.1| nucleoside deaminase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|312280852|gb|ADQ61571.1| Nucleoside deaminase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 169

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 21/128 (16%)

Query: 30  SVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR-----GATAYVTLEPC 79
            +  ++V  DG +IGRG         G  HAE+ A++EA ++         + +VTLEPC
Sbjct: 28  PIGAVVVGPDGQIIGRGYNRRELDEDGTAHAEILAIKEACQKLDSWRLIDCSLFVTLEPC 87

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR-----GLQWLSQKGIIVDRMMESEG 134
           +       CA  II   I+ V     DP    +G       ++  +    ++  + + +G
Sbjct: 88  AM------CAGAIINSRIKEVYFAAMDPKAGAAGSVVDLFSVEKFNHHPEVIRGLYKEQG 141

Query: 135 KIFLHAYL 142
            + L  + 
Sbjct: 142 ALLLKDFF 149


>gi|60593936|pdb|1WWR|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From
           Aquifex Aeolicus
 gi|60593937|pdb|1WWR|B Chain B, Crystal Structure Of Trna Adenosine Deaminase Tada From
           Aquifex Aeolicus
 gi|60593938|pdb|1WWR|C Chain C, Crystal Structure Of Trna Adenosine Deaminase Tada From
           Aquifex Aeolicus
 gi|60593939|pdb|1WWR|D Chain D, Crystal Structure Of Trna Adenosine Deaminase Tada From
           Aquifex Aeolicus
          Length = 171

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 17/123 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
             F+  ALR ++           V  +IVK+G +I +   +         HAE+ A++EA
Sbjct: 24  EYFLKVALREAKRA--FEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEA 81

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                     G   YVTLEPC        C+  ++   I +V+    D            
Sbjct: 82  CRRLNTKYLEGCELYVTLEPCIM------CSYALVLSRIEKVIFSALDKKHGGVVSVFNI 135

Query: 119 LSQ 121
           L +
Sbjct: 136 LDE 138


>gi|306831703|ref|ZP_07464860.1| guanine deaminase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|304426128|gb|EFM29243.1| guanine deaminase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
          Length = 172

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 16/110 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
             +M  A++ +   +      P    +IVKDG +I  G       +    H EV A+ +A
Sbjct: 21  EDYMQKAIQEAYDGIKKGDGGP-FGSVIVKDGEIIASGHNMVLAHHDPTAHGEVTAIRKA 79

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           GE     +  G T + T EPC      P C    +   I ++       D
Sbjct: 80  GEKLGTHDLSGTTLFTTGEPC------PMCLAACLWANIDKIYYGCTIAD 123


>gi|288818013|ref|YP_003432360.1| tRNA-specific adenosine deaminase [Hydrogenobacter thermophilus
           TK-6]
 gi|288787412|dbj|BAI69159.1| tRNA-specific adenosine deaminase [Hydrogenobacter thermophilus
           TK-6]
 gi|308751614|gb|ADO45097.1| CMP/dCMP deaminase zinc-binding protein [Hydrogenobacter
           thermophilus TK-6]
          Length = 149

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 53/150 (35%), Gaps = 25/150 (16%)

Query: 8   ARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
            +F+   L  +R     G T     V C++VKDG VI +             HAE+ AL 
Sbjct: 2   EKFIELCLNLARRAYERGET----PVGCVVVKDGKVIAKAHNRVEELKDPTAHAEMLALR 57

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           EA     G+   G   YV+LEPC        C   +I   + R++    D          
Sbjct: 58  EASESMGGKYLYGCEIYVSLEPC------VMCTYAMILKRVERLIFLAQDYRHGGVMSMY 111

Query: 117 QWLS----QKGIIVDRMMESEGKIFLHAYL 142
             L        +  + M   E +  L  + 
Sbjct: 112 SLLDDMRFHHRVRWEYMPVEEAQKLLRDFF 141


>gi|307565958|ref|ZP_07628417.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella amnii CRIS 21A-A]
 gi|307345386|gb|EFN90764.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella amnii CRIS 21A-A]
          Length = 156

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 56/145 (38%), Gaps = 17/145 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--TAYGG--CPHAEVQALEE 62
           D  +M  AL  ++           +  +IV    +I R    T        HAE+QA+  
Sbjct: 16  DLYYMQFALEEAKQA--YKEKEIPIGAIIVCKDRIIARAHNLTERLHDVTAHAEMQAITI 73

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G+   G T YVT+EPC        CA  +    ++R+V    D          +
Sbjct: 74  AANELGGKYLEGCTLYVTVEPCIM------CAGALGWSQMKRIVFGCIDDKRGYHTYAPK 127

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYL 142
            L  K  I+  +ME+E K  +  + 
Sbjct: 128 ALHPKANIIGGIMENECKELMLRFF 152


>gi|262200019|ref|YP_003271228.1| CMP/dCMP deaminase zinc-binding protein [Haliangium ochraceum DSM
           14365]
 gi|262083366|gb|ACY19335.1| CMP/dCMP deaminase zinc-binding protein [Haliangium ochraceum DSM
           14365]
          Length = 147

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 14/101 (13%)

Query: 30  SVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGEEARG----ATAYVTLEPCSH 81
            V  +IV DG +I RG            HAEV+AL  A           T YVT EPC  
Sbjct: 18  PVGAVIVCDGEIIARGRNRRQLDKDPTAHAEVEALRSASRSLGNWRVEGTLYVTQEPC-- 75

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
               P CA  ++   ++R+V    +P         + +S  
Sbjct: 76  ----PMCAGALVNARVQRLVYGCPNPKAGSVHTLYRLVSDA 112


>gi|309805439|ref|ZP_07699486.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus iners LactinV 09V1-c]
 gi|309810071|ref|ZP_07703917.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus iners SPIN 2503V10-D]
 gi|308165257|gb|EFO67493.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus iners LactinV 09V1-c]
 gi|308169570|gb|EFO71617.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus iners SPIN 2503V10-D]
          Length = 158

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 54/165 (32%), Gaps = 23/165 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHA 55
           M       + M  A   +            +  +IV  +G +IGRG            HA
Sbjct: 1   MFAKEEKEKIMKLAFLEADKAEQQ--GEIPIGAVIVDAEGNLIGRGYNRRELDEDATRHA 58

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A++EA +          + +VTLEPC      P CA  II   ++ V     DP   
Sbjct: 59  EIIAIQEACKNLNSWRLIDCSLFVTLEPC------PMCAGAIINARLKNVYYGAFDPKAG 112

Query: 111 VSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
             G  +   +         I   +   +    L  +     ++  
Sbjct: 113 ACGSVVDLFAFTKFNHHPQIFGGLYREQAAQQLKKFFKNIRQQNR 157


>gi|289644955|ref|ZP_06476996.1| CMP/dCMP deaminase zinc-binding [Frankia symbiont of Datisca
           glomerata]
 gi|289505228|gb|EFD26286.1| CMP/dCMP deaminase zinc-binding [Frankia symbiont of Datisca
           glomerata]
          Length = 224

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 61/150 (40%), Gaps = 26/150 (17%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPS---VACLIVK---------DGIVIGRGVTAY 49
             +  D R++  A+  SR        +PS   V  ++V             V+  G +  
Sbjct: 63  TAAGADERWLRMAVEISRR----CPPSPSAFSVGAVLVDRSAGLAADASARVLATGYSRE 118

Query: 50  -GGCPHAEVQALEEAGEEARGA--------TAYVTLEPCSHYGRSPP-CAQFIIECGIRR 99
                HAE  AL    + A+          T Y +LEPCS     P  C + IIE GIRR
Sbjct: 119 LDPRDHAEEVALRRLAQHAQDGPPVPAGSLTLYSSLEPCSARASRPRTCTELIIEAGIRR 178

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           VV    +P+V V   G + + + G+ V  +
Sbjct: 179 VVFAWREPEVFVDCEGAEIMRRAGLDVVEV 208


>gi|121714253|ref|XP_001274737.1| cytidine and deoxycytidylate deaminase zinc-binding domain protein
           [Aspergillus clavatus NRRL 1]
 gi|119402891|gb|EAW13311.1| cytidine and deoxycytidylate deaminase zinc-binding domain protein
           [Aspergillus clavatus NRRL 1]
          Length = 191

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 61/164 (37%), Gaps = 26/164 (15%)

Query: 3   VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           V    A FM  AL      +  G T     V C++V+DG +IG G+        G  HAE
Sbjct: 14  VDPTHAYFMKQALLMGEKALEIGET----PVGCVLVRDGQLIGSGMNDTNKSMNGTRHAE 69

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
             A+EE          R    YVT+EPC        CA  + +  IR V     +     
Sbjct: 70  FIAIEEMLRSHPRSLLRSTDLYVTVEPC------VMCASALRQYQIRSVYFGCANERFGG 123

Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRS 150
           +G  L   S   +     +   +   E  + L  +  ++ +K  
Sbjct: 124 TGSILSLHSDPTLDPPYPVHGGLFREEAIMLLRRFYIQENDKAP 167


>gi|150024385|ref|YP_001295211.1| cytosine/adenosine deaminase [Flavobacterium psychrophilum
           JIP02/86]
 gi|149770926|emb|CAL42391.1| Probable cytosine/adenosine deaminase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 146

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 18/147 (12%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           D  FM  AL+ +  +V        V  ++V +  +I +             HAE+QA+  
Sbjct: 7   DEYFMRKALQEA--YVAFDKEEIPVGAIVVINNRIIAKSHNLTELLNDVTAHAEMQAITA 64

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           +     G+       YVTLEPC        CA  +    I ++V    DP  R   +   
Sbjct: 65  SANFLGGKYLTNCILYVTLEPCQM------CAGALYWSQISKIVFGASDP-QRGFTKMGT 117

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTR 144
            L  K I+V+ ++ESE    +  +  +
Sbjct: 118 QLHPKTIVVNGILESECGELMKEFFRK 144


>gi|305664674|ref|YP_003860961.1| putative cytosine/adenosine deaminase [Maribacter sp. HTCC2170]
 gi|88707375|gb|EAQ99621.1| putative cytosine/adenosine deaminase [Maribacter sp. HTCC2170]
          Length = 154

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 16/131 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           + + + D  +M+  ++ +       + N  V  LIV    ++G G     +      HAE
Sbjct: 8   LNMVNHD-FYMAKCIQLAEEAKQ--NGNTPVGALIVSKDEILGIGRENTRSKKDITRHAE 64

Query: 57  VQALEEAGEE---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           ++A++ A ++    +GA  Y T EPC        C+  I    I  VV  +    +    
Sbjct: 65  IEAIQNALKKVKSLKGAILYTTHEPC------VMCSYVIRHYEIGTVVFGLRSKYIGGKS 118

Query: 114 RGLQWLSQKGI 124
                L  + I
Sbjct: 119 SEFNLLETENI 129


>gi|159906167|ref|YP_001549829.1| CMP/dCMP deaminase zinc-binding [Methanococcus maripaludis C6]
 gi|159887660|gb|ABX02597.1| CMP/dCMP deaminase zinc-binding [Methanococcus maripaludis C6]
          Length = 145

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 58/148 (39%), Gaps = 20/148 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGE 65
           FM  A++ ++  +GL      +  ++V    +IGRG            HAE+ ALE AG 
Sbjct: 4   FMEEAIKEAK--LGLEEGGIPIGAVLVYKNKIIGRGHNRRVQTNSAILHAEMDALENAGR 61

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                 +    Y TL PC        C+  ++   I++VV+  +   +         L +
Sbjct: 62  LTSDIYKNCELYTTLSPCIM------CSGAVLLYKIKKVVIGENKTFLGAE----DLLIK 111

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            G+ V+ + +      +  ++    +  
Sbjct: 112 NGVSVEVLNDERCVKMMEDFIKNNPKLW 139


>gi|325685703|gb|EGD27782.1| cytidine/deoxycytidylate deaminase [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 169

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 16/101 (15%)

Query: 30  SVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR-----GATAYVTLEPC 79
            +  ++V  DG +IGRG         G  HAE+ A++EA ++         + +VTLEPC
Sbjct: 28  PIGAVVVGPDGQIIGRGYNRRELDEDGTAHAEILAIKEACQKLDSWRLIDCSLFVTLEPC 87

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           +       CA  II   I+ V     DP    +G  +   S
Sbjct: 88  AM------CAGAIINSRIKEVYFAAMDPKAGAAGSVVDLFS 122


>gi|90021123|ref|YP_526950.1| tRNA-adenosine deaminase [Saccharophagus degradans 2-40]
 gi|89950723|gb|ABD80738.1| tRNA-adenosine deaminase [Saccharophagus degradans 2-40]
          Length = 176

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 28/124 (22%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  ++V+D  ++G G            HAE+ AL +A +         AT YVT+EPC 
Sbjct: 29  PVGAVVVRDNKILGSGFNTPISGCDPTAHAEITALRQAAKNEHNYRLPDATLYVTIEPC- 87

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
                  C   I+   + RVV    +P               G+I    +  +G  F H 
Sbjct: 88  -----TMCLGAIMHARVARVVYGATEPK-------------AGVIYSNPVWQQGGFFNHQ 129

Query: 141 YLTR 144
               
Sbjct: 130 VEWC 133


>gi|329921024|ref|ZP_08277552.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus iners SPIN 1401G]
 gi|328935300|gb|EGG31780.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus iners SPIN 1401G]
          Length = 158

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 54/165 (32%), Gaps = 23/165 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHA 55
           M       R M  A   +            +  +IV  +G +IGRG            HA
Sbjct: 1   MFAKEEKERIMKLAFLEADKAEQQ--GEIPIGAVIVDAEGNLIGRGYNRRELDEDATRHA 58

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A++EA +          + +VTLEPC      P CA  II   ++ V     DP   
Sbjct: 59  EIIAIQEACKNLNSWRLIDCSLFVTLEPC------PMCAGAIINARLKNVYYGAFDPKAG 112

Query: 111 VSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
             G  +   +         I   +   +    L  +     ++  
Sbjct: 113 ACGSVVDLFAFTKFNHHPQIFGGLYREQAAQQLKIFFKNIRQQNR 157


>gi|307610417|emb|CBW99987.1| hypothetical protein LPW_17441 [Legionella pneumophila 130b]
          Length = 147

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 62/154 (40%), Gaps = 25/154 (16%)

Query: 6   FDARFMSAALRFS--RWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAEVQ 58
            D  +M  A   +    + G       V  ++V KD  ++G G      ++    HAE++
Sbjct: 2   IDKFWMQLAYEQAVIARNEGEV----PVGAVLVSKDNQLLGVGRNVIEKSHDPSDHAEIR 57

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+ +A  +         T YVTLEPC        CA  ++   I+R+V    D     +G
Sbjct: 58  AIRQASRKLNNHRLLDTTLYVTLEPC------VMCAGLMVHARIKRLVFATRDFKAGAAG 111

Query: 114 RGLQ---WLSQKGIIVDRMMESEGKIFLHAYLTR 144
                   L+   +I + +M++E    L  +  +
Sbjct: 112 SMFNVLHALNHSVLIDEGIMQAECSQLLSDFFRK 145


>gi|116625482|ref|YP_827638.1| tRNA-adenosine deaminase [Candidatus Solibacter usitatus Ellin6076]
 gi|116228644|gb|ABJ87353.1| tRNA-adenosine deaminase [Candidatus Solibacter usitatus Ellin6076]
          Length = 142

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 54/146 (36%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEAGE- 65
           M  AL  +R    L      V  +I   G VIGRG  A         HAE+ A+ EA   
Sbjct: 1   MYQALALARSGAAL--GEVPVGAVIALAGEVIGRGSNAPVAQMDPTAHAEILAIREAASR 58

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ---- 117
                  GAT Y TLEPC        CA  ++   I RVV    D          Q    
Sbjct: 59  IANYRLTGATLYCTLEPC------VMCAGALVAARIERVVFGARDLRFGGVRSKFQLADS 112

Query: 118 -WLSQKGIIVDRMMESEGKIFLHAYL 142
             L+ +  IV+ ++  E    L  + 
Sbjct: 113 DLLNHRVEIVEGVLAVECVQLLREFF 138


>gi|54297635|ref|YP_124004.1| hypothetical protein lpp1686 [Legionella pneumophila str. Paris]
 gi|53751420|emb|CAH12838.1| hypothetical protein lpp1686 [Legionella pneumophila str. Paris]
          Length = 149

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 25/155 (16%)

Query: 3   VSSFDARFMSAALRFS--RWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHA 55
           +   D  +M  A   +    + G       V  ++V KD  ++G G      ++    HA
Sbjct: 1   MGMIDKFWMQLAYEQAVIARNEGEV----PVGAVLVSKDNQLLGVGRNVIEKSHDPSDHA 56

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E++A+ +A  +         T YVTLEPC        CA  ++   I+R+V    D    
Sbjct: 57  EIRAIRQASRKLNNHRLLDTTLYVTLEPC------VMCAGLMVHARIKRLVFATRDFKAG 110

Query: 111 VSGRGLQ---WLSQKGIIVDRMMESEGKIFLHAYL 142
            +G        L+   +I + +M++E    L  + 
Sbjct: 111 AAGSMFNVLHALNHSVLIDEGIMQAECSQLLSDFF 145


>gi|319948484|ref|ZP_08022618.1| hypothetical protein ES5_03898 [Dietzia cinnamea P4]
 gi|319437851|gb|EFV92837.1| hypothetical protein ES5_03898 [Dietzia cinnamea P4]
          Length = 248

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 72/192 (37%), Gaps = 16/192 (8%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD--PEL 207
             I   +  + D         S  +     +     +RA++D ++VG  T LA+   P  
Sbjct: 32  PRIRAVMISTVDGST-TVDGRSGGLGTPTDRLVYDAMRARADLVMVGSATALAEGYGP-- 88

Query: 208 TCRLNGL---QEHSPMRIILDPHFKLSLDSKIIKTA---LLAPVIIVTENDDPVLALAFR 261
             R+ G+   +   P  ++L     +    ++I        A  ++           A R
Sbjct: 89  -ARIAGVWAGRRPGPPPVVLVFTRSIPD--RLIDHCAPLGDAVQVVAAHGVPGDRLEAAR 145

Query: 262 KKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
           ++ + +   D   L+  +  L    G + +  EGG  +  +F+    VD ++L  +  ++
Sbjct: 146 RQGVTVHVLDPGPLRAAVRSLATHFGASEVAFEGGPGLLGTFLREGAVDELVLSVAPQLV 205

Query: 321 GEGGIPSPLEEG 332
             G   +PL  G
Sbjct: 206 VGGDR-TPLASG 216


>gi|307354384|ref|YP_003895435.1| CMP/dCMP deaminase zinc-binding protein [Methanoplanus petrolearius
           DSM 11571]
 gi|307157617|gb|ADN36997.1| CMP/dCMP deaminase zinc-binding protein [Methanoplanus petrolearius
           DSM 11571]
          Length = 148

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 18/153 (11%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQ 58
           ++    RFM+AA+  ++   G       +  ++V+DG +IG G            HAE+ 
Sbjct: 1   MNPATDRFMTAAIIEAK--TGHDEGGIPIGAVLVRDGKIIGSGHNRRIQENDPIIHAEID 58

Query: 59  ALEEAG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            L  AG     +  T Y TL PC        CA  +++ GIRRVVV     + R      
Sbjct: 59  CLRNAGRIGSYKDTTLYSTLMPCY------LCAGAVVQFGIRRVVVG----ESRNFAGAK 108

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           ++L   G+ V  +   E    +  ++    E  
Sbjct: 109 EFLISMGVEVTDLDLDECADMMAEFIKNNPELW 141


>gi|317132506|ref|YP_004091820.1| CMP/dCMP deaminase zinc-binding protein [Ethanoligenens harbinense
           YUAN-3]
 gi|315470485|gb|ADU27089.1| CMP/dCMP deaminase zinc-binding protein [Ethanoligenens harbinense
           YUAN-3]
          Length = 160

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 53/155 (34%), Gaps = 29/155 (18%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           S    +M  AL  +    G     P +  +IVKDG  +  G        H    AL  A 
Sbjct: 7   SMHETWMRLALEQAERA-GREGEVP-IGAVIVKDGAALAVGRNRRE-TDH---NALAHAE 60

Query: 65  E-------------EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
                            G T YVTLEPC      P CA  II   +  VV    DP    
Sbjct: 61  AEAIRAACAALGSWRLSGCTLYVTLEPC------PMCAGAIINARVDTVVFGAYDPKAGA 114

Query: 112 SGRGLQW----LSQKGIIVDRMMESEGKIFLHAYL 142
           SG  +       +    ++  ++E + +  L  + 
Sbjct: 115 SGSVIDLFSCPFNHHPAVMGGVLEEDCRRLLQDFF 149


>gi|302334869|ref|YP_003800076.1| tRNA-adenosine deaminase [Olsenella uli DSM 7084]
 gi|301318709|gb|ADK67196.1| tRNA-adenosine deaminase [Olsenella uli DSM 7084]
          Length = 163

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 55/153 (35%), Gaps = 22/153 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQA 59
           +  D RFM  AL  +   +  T     +  ++V  G VI R        G P  HAE  A
Sbjct: 9   TVEDERFMGLALEEA--CIAATEDEVPIGAVVVCGGEVIARAHNRRETDGDPSAHAEFSA 66

Query: 60  LEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG- 113
           + +A          G T YVTLEPC        CA  ++   + R V    DP     G 
Sbjct: 67  MVQAARALGRWRLTGCTVYVTLEPCLM------CAGLMVNARVDRCVYGAADPKGGAVGT 120

Query: 114 ----RGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
                    L+    +   ++E E    L  + 
Sbjct: 121 LYDVSDDARLNHSFPVTAGVLEDECAQILRDFF 153


>gi|78777832|ref|YP_394147.1| cytosine deaminase [Sulfurimonas denitrificans DSM 1251]
 gi|78498372|gb|ABB44912.1| Cytosine deaminase [Sulfurimonas denitrificans DSM 1251]
          Length = 145

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 63/149 (42%), Gaps = 20/149 (13%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG 64
           +F+ AA+  ++   GL      +  ++V DG ++GRG            HAE+  LE AG
Sbjct: 3   KFLQAAIEEAKK--GLKEGGIPIGSVLVIDGKIVGRGHNRRVQDSSAILHAEMDCLENAG 60

Query: 65  EEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             A    + A  Y TL PCS       C+   +   I ++++  +    R      +++ 
Sbjct: 61  RMAASEYKKAILYSTLSPCSM------CSGAALLYKIPKIIIGEN----RTFKGPEEYVR 110

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
             G+ V+ +   E    + +++ +  +  
Sbjct: 111 SCGVEVEILDNQECFDMMQSFIQKNPQLW 139


>gi|325911630|ref|ZP_08174038.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus iners UPII 143-D]
 gi|325476616|gb|EGC79774.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus iners UPII 143-D]
          Length = 158

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 53/165 (32%), Gaps = 23/165 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHA 55
           M       R M  A   +            +  +IV   G +IGRG            HA
Sbjct: 1   MFAKEEKERIMKLAFLEADKAEQQ--GEIPIGAVIVDAKGNLIGRGYNRRELDEDATRHA 58

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A++EA +          + +VTLEPC      P CA  II   ++ V     DP   
Sbjct: 59  EIIAIQEACKNLNSWRLIDCSLFVTLEPC------PMCAGAIINARLKNVYYGAFDPKAG 112

Query: 111 VSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
             G  +   +         I   +   +    L  +     ++  
Sbjct: 113 ACGSVVDLFAFTKFNHHPQIFGGLYREQAAQQLKNFFKNIRQQNR 157


>gi|254293360|ref|YP_003059383.1| CMP/dCMP deaminase zinc-binding [Hirschia baltica ATCC 49814]
 gi|254041891|gb|ACT58686.1| CMP/dCMP deaminase zinc-binding [Hirschia baltica ATCC 49814]
          Length = 154

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 44/110 (40%), Gaps = 19/110 (17%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYGG----CPHAEVQALEEA 63
           +M+ A++ +     L    P V  +IV    G ++G G     G      HAE+ A+  A
Sbjct: 9   YMARAMQLAEEAA-LAGEVP-VGAVIVDPSTGNIVGEGRNGPIGAHDPTAHAEIVAIRNA 66

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                         YVTLEPC+       CA  I    I +VV   DDP 
Sbjct: 67  CASVDNYRLPDLELYVTLEPCAM------CAGAISFARIGKVVFAADDPK 110


>gi|91773185|ref|YP_565877.1| CMP/dCMP deaminase, zinc-binding [Methanococcoides burtonii DSM
           6242]
 gi|91712200|gb|ABE52127.1| Cytosine deaminase [Methanococcoides burtonii DSM 6242]
          Length = 143

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 19/150 (12%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
            D  FM  A+  +R   GL S    +  ++V+D ++IG+G            HAE+  L 
Sbjct: 1   MDE-FMQVAIDEARS--GLNSGGIPIGSVLVRDDLIIGKGHNLRVQQDDPMAHAEISCLR 57

Query: 62  EAG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           +AG     R +  Y TL PC        CA  +++ GI++V+V     + R      +++
Sbjct: 58  DAGRVGSYRDSILYSTLMPCY------LCAGAVVQFGIKKVIVG----ESRTFSGAREFM 107

Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
              G+ V  +   E    +  +++++ E  
Sbjct: 108 ESHGVEVVDLDLDECVAMMDDFISKEPELW 137


>gi|309803507|ref|ZP_07697600.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus iners LactinV 11V1-d]
 gi|308164391|gb|EFO66645.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus iners LactinV 11V1-d]
          Length = 158

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 54/165 (32%), Gaps = 23/165 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHA 55
           M       + M  A   +            +  +IV  +G +IGRG            HA
Sbjct: 1   MFAKEEKEKIMKLAFLEADKAEKQ--GEIPIGAVIVDAEGNLIGRGYNRRELDEDATRHA 58

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A++EA +          + +VTLEPC      P CA  II   ++ V     DP   
Sbjct: 59  EIIAIQEACKNLNSWRLIDCSLFVTLEPC------PMCAGAIINARLKNVYYGAFDPKAG 112

Query: 111 VSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
             G  +   +         I   +   +    L  +     ++  
Sbjct: 113 ACGSVVDLFAFTKFNHHPQIFGGLYREQAAQQLKIFFKNIRQQNR 157


>gi|311112334|ref|YP_003983556.1| tRNA-adenosine deaminase [Rothia dentocariosa ATCC 17931]
 gi|310943828|gb|ADP40122.1| tRNA-adenosine deaminase [Rothia dentocariosa ATCC 17931]
          Length = 176

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 55/153 (35%), Gaps = 23/153 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----TAYGGCPHAEVQA 59
           +   R+M  AL   +      +    +  ++V  +G +IG G       +    HAE+ A
Sbjct: 23  AEHERWMRLALDEGKRAA--CAGEIPIGAVVVNAEGEIIGSGHNSREHDHDPTGHAEIHA 80

Query: 60  LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           + +A +  +       T  VT+EPC        CA  I+   I  VV+   +      G 
Sbjct: 81  IRQAAQHLKTWRLEECTLVVTVEPCLM------CAGAILMARIPTVVMGAWEEKTGAVGS 134

Query: 115 GLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
               L  + +     +   ++  E    +  + 
Sbjct: 135 QYDVLRDRRLGLDVQVYAGVLREECAELMRTFF 167


>gi|237756081|ref|ZP_04584658.1| tRNA-specific adenosine deaminase [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691753|gb|EEP60784.1| tRNA-specific adenosine deaminase [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 149

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 19/111 (17%)

Query: 8   ARFMSAALRFSRWHVGLTSTN-PSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
            +F+  A++ +   +     N   V  +IVKDG +I +             HAE+ A+E+
Sbjct: 5   KKFIDQAVKEAEKAL---KKNEVPVGAIIVKDGKIISKAHNQRISKNNALYHAEILAIEK 61

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           A ++ +      A  Y TLEPC        C   +++  I++VV C  D  
Sbjct: 62  ACKKLKTWRLDDAVLYTTLEPCLM------CTGAVMQARIKKVVFCAKDEK 106


>gi|270159636|ref|ZP_06188292.1| tRNA-specific adenosine deaminase [Legionella longbeachae D-4968]
 gi|289165578|ref|YP_003455716.1| tRNA-specific adenosine deaminase [Legionella longbeachae NSW150]
 gi|269987975|gb|EEZ94230.1| tRNA-specific adenosine deaminase [Legionella longbeachae D-4968]
 gi|288858751|emb|CBJ12656.1| tRNA-specific adenosine deaminase [Legionella longbeachae NSW150]
          Length = 149

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 58/154 (37%), Gaps = 23/154 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT--AYGGCP--HAEVQALE 61
           D  +M  A   +      T     V  ++V +   ++G G         P  HAE+QA+ 
Sbjct: 3   DQYWMRQAYEQALLAQ--TEGEVPVGAILVSNENQLLGAGRNLIQKSHDPSSHAEIQAIR 60

Query: 62  EAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           +A +  +       T YVTLEPC+       CA  ++   I R+V    D     +G   
Sbjct: 61  QASQRLQNHRLLDTTLYVTLEPCAM------CAGLMVHARISRLVFATRDFKSGAAGSVY 114

Query: 117 QWLS-----QKGIIVDRMMESEGKIFLHAYLTRQ 145
             L       K  I + +M+++    L  +    
Sbjct: 115 NLLQGYPLNHKVQIDEGIMQAQCASLLSEFFKAC 148


>gi|298373649|ref|ZP_06983638.1| tRNA-specific adenosine deaminase [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298274701|gb|EFI16253.1| tRNA-specific adenosine deaminase [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 143

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 51/145 (35%), Gaps = 17/145 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           D  FM  ALR +            +  ++V  G +I +             HAE+QA+  
Sbjct: 3   DVYFMQQALREA--AYAFDEGEVPIGAVVVCAGNIIAKAHNLTERLNDVTAHAEMQAVTM 60

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G+     T YVTLEPC        CA  +    I RVV    D          +
Sbjct: 61  AANYLGGKYLNDCTLYVTLEPC------VMCAGALAWAHIGRVVFGAYDDKRGFGRFAPK 114

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYL 142
            L  K  +V  +M  E    L  + 
Sbjct: 115 ALHTKTELVGGVMAQECGEILQRFF 139


>gi|54294609|ref|YP_127024.1| hypothetical protein lpl1685 [Legionella pneumophila str. Lens]
 gi|53754441|emb|CAH15925.1| hypothetical protein lpl1685 [Legionella pneumophila str. Lens]
          Length = 149

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 25/157 (15%)

Query: 3   VSSFDARFMSAALRFS--RWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHA 55
           +   D  +M  A   +    + G       V  ++V KD  ++G G      ++    HA
Sbjct: 1   MGMIDKFWMQLAYEQAVIARNEGEV----PVGAVLVSKDNQLLGVGRNVIEKSHDPSDHA 56

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E++A+ +A  +         T YVTLEPC        CA  ++   I+R+V    D    
Sbjct: 57  EIRAIRQASRKLNNHRLLDTTLYVTLEPC------VMCAGLMVHARIKRLVFATRDFKAG 110

Query: 111 VSGRGLQ---WLSQKGIIVDRMMESEGKIFLHAYLTR 144
            +G        L+   +I + +M++E    L  +  +
Sbjct: 111 AAGSIFNVLHALNHSVLIDEGIMQAECSQLLSDFFRK 147


>gi|33592773|ref|NP_880417.1| putative zinc-binding hydrolase [Bordetella pertussis Tohama I]
 gi|33572421|emb|CAE41987.1| putative zinc-binding hydrolase [Bordetella pertussis Tohama I]
 gi|332382186|gb|AEE67033.1| putative zinc-binding hydrolase [Bordetella pertussis CS]
          Length = 149

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 50/147 (34%), Gaps = 23/147 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTA----YGGCPHAEVQALEEAGE 65
           M+ AL  ++    L      V  ++V   G V+G G            HAE+ AL  A  
Sbjct: 1   MALALEQAQEAARL--GEVPVGAVVVDAQGEVLGTGYNRTIIDRDPTAHAEIVALRAAAR 58

Query: 66  EAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ--- 117
                   G + YVTLEPC        C   ++   + RVV    DP     G  L    
Sbjct: 59  RLDNYRLPGVSLYVTLEPC------VMCIGAMLHARLARVVYGARDPKTGACGSVLDVGA 112

Query: 118 --WLSQKGIIVDRMMESEGKIFLHAYL 142
              L+    I   ++       L  + 
Sbjct: 113 VGQLNHHTTITGGVLAEPCGELLRGFF 139


>gi|223937372|ref|ZP_03629277.1| CMP/dCMP deaminase zinc-binding [bacterium Ellin514]
 gi|223893923|gb|EEF60379.1| CMP/dCMP deaminase zinc-binding [bacterium Ellin514]
          Length = 155

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 24/115 (20%)

Query: 8   ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
            ++M  A+R S    R  +G          ++VK+G ++GRG            HAEV A
Sbjct: 3   KKYMQEAVRISIRMMRRGIGG-----PFGAVVVKNGKIVGRGCNQVTSTNDPTAHAEVVA 57

Query: 60  LEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           + +A +  +         Y + EPC      P C   I    +++V       D 
Sbjct: 58  IRDACKRLKTFQLDDCELYTSCEPC------PMCLSAIYWARLKKVYYGNTRKDA 106


>gi|183601156|ref|ZP_02962649.1| hypothetical protein PROSTU_04786 [Providencia stuartii ATCC 25827]
 gi|188019501|gb|EDU57541.1| hypothetical protein PROSTU_04786 [Providencia stuartii ATCC 25827]
          Length = 154

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 23/117 (19%)

Query: 6   FDARFMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
            D +F+  A+  ++      G          +IV+DG V+  GV           HAE+ 
Sbjct: 2   QDKQFLQQAISLAKENVKAGGR-----PFGAVIVRDGAVVATGVNQMLELNDPTAHAELM 56

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           AL +AGE            Y + +PC      P C   +   GI R+V    + D  
Sbjct: 57  ALRQAGETLKRTRLEDCVVYASGQPC------PMCLAAMRMAGISRIVYAYSNQDAE 107


>gi|148359260|ref|YP_001250467.1| deaminase [Legionella pneumophila str. Corby]
 gi|296107307|ref|YP_003619007.1| Cytosine/adenosine deaminase [Legionella pneumophila 2300/99 Alcoy]
 gi|148281033|gb|ABQ55121.1| deaminase [Legionella pneumophila str. Corby]
 gi|295649208|gb|ADG25055.1| Cytosine/adenosine deaminase [Legionella pneumophila 2300/99 Alcoy]
          Length = 147

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 25/152 (16%)

Query: 6   FDARFMSAALRFS--RWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAEVQ 58
            D  +M  A   +    + G       V  ++V KD  ++G G      ++    HAE++
Sbjct: 2   IDKFWMQLAYEQAVIARNEGEV----PVGAVLVSKDNQLLGVGRNVIEKSHDPSDHAEIR 57

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+ +A  +         T YVTLEPC        CA  ++   I+R+V    D     +G
Sbjct: 58  AIRQASRKLNNHRLLDTTLYVTLEPC------VMCAGLMVHARIKRLVFATRDFKAGAAG 111

Query: 114 RGLQ---WLSQKGIIVDRMMESEGKIFLHAYL 142
                   L+   +I + +M++E    L  + 
Sbjct: 112 SMFNVLHALNHSVLIDEGIMQAECSQLLSDFF 143


>gi|255534332|ref|YP_003094703.1| Deoxycytidylate deaminase [Flavobacteriaceae bacterium 3519-10]
 gi|255340528|gb|ACU06641.1| Deoxycytidylate deaminase [Flavobacteriaceae bacterium 3519-10]
          Length = 141

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 38/155 (24%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M  + FD  ++  A+ +++           V  LIVKD ++I  G     G P       
Sbjct: 1   MEPTKFDFAYLKMAMEWAKLSHCERRK---VGALIVKDRMIISDGY---NGTPSGFENCC 54

Query: 54  ------------HAEVQA-LEEAG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE  A L+ AG  + A+ AT Y+TL PC        C++  ++ GI+
Sbjct: 55  EDSEGKTHWYVLHAEANAILKLAGSTQSAKDATLYLTLSPC------RDCSKLAVQAGIK 108

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
           +VV   D  D      G+ +L   GI + ++ + +
Sbjct: 109 KVVYMDDYSD----NAGITFLQDHGIEILKISKEQ 139


>gi|170078671|ref|YP_001735309.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Synechococcus sp. PCC 7002]
 gi|169886340|gb|ACB00054.1| Cytidine and deoxycytidylate deaminase zinc-binding protein
           [Synechococcus sp. PCC 7002]
          Length = 158

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 43/119 (36%), Gaps = 18/119 (15%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEA 63
            +M  A+  +    G +   P V  +IV      + +             HAE+  +  A
Sbjct: 12  HWMQKAIALA-KVAGQSGEIP-VGAVIVDGKNQCLAQSGNRKEKTQDPTAHAEMLVIRAA 69

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            +       +  T YVTLEPC      P CA  +I   +++VV   DDP          
Sbjct: 70  SQMRQDWHLQDCTLYVTLEPC------PMCAGAMIHSRLKQVVYGADDPKTGALRSMAN 122


>gi|21228824|ref|NP_634746.1| hypothetical protein MM_2722 [Methanosarcina mazei Go1]
 gi|20907345|gb|AAM32418.1| hypothetical protein MM_2722 [Methanosarcina mazei Go1]
          Length = 161

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 41/123 (33%), Gaps = 25/123 (20%)

Query: 2   PVSSFDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCP 53
            +S  D   +  A+  S    +   G          +IVK+G ++               
Sbjct: 4   SMSEKDLLLIRRAIELSLESVKRGGG------PFGAVIVKNGKIVSESYNQVTLHNDPTA 57

Query: 54  HAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+ A+ EA       +  G + Y++ EPC      P C   I    I +V       D
Sbjct: 58  HAEIGAIREAARKLNTFDLSGCSIYISCEPC------PMCLGAIYWARIDKVFFASTRSD 111

Query: 109 VRV 111
              
Sbjct: 112 AEN 114


>gi|313200758|ref|YP_004039416.1| cmp/dcmp deaminase zinc-binding protein [Methylovorus sp. MP688]
 gi|312440074|gb|ADQ84180.1| CMP/dCMP deaminase zinc-binding protein [Methylovorus sp. MP688]
          Length = 175

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/127 (29%), Positives = 52/127 (40%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  L+V DG +IGRG+ A  G      HAE+QA+ EA          G T YVTLEPC+
Sbjct: 37  PVGALVVLDGAIIGRGMNAPIGRHDPTAHAEIQAMREAASAIGNYRLVGCTLYVTLEPCA 96

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGK 135
                  C+  I    I R+V    DP     G  +       L+    +   ++  E  
Sbjct: 97  M------CSGAIQHARIARLVYGARDPKTGSCGSVIDLMAEPRLNHHTEVAGGILAEESG 150

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 151 SMLSRFF 157


>gi|150006872|ref|YP_001301615.1| deoxycytidylate deaminase [Parabacteroides distasonis ATCC 8503]
 gi|255016096|ref|ZP_05288222.1| deoxycytidylate deaminase [Bacteroides sp. 2_1_7]
 gi|256842138|ref|ZP_05547643.1| deoxycytidylate deaminase [Parabacteroides sp. D13]
 gi|298377298|ref|ZP_06987251.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
           3_1_19]
 gi|301308695|ref|ZP_07214647.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
           20_3]
 gi|149935296|gb|ABR41993.1| deoxycytidylate deaminase [Parabacteroides distasonis ATCC 8503]
 gi|256736454|gb|EEU49783.1| deoxycytidylate deaminase [Parabacteroides sp. D13]
 gi|298265712|gb|EFI07372.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
           3_1_19]
 gi|300833219|gb|EFK63837.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
           20_3]
          Length = 144

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 58/148 (39%), Gaps = 32/148 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC------------ 52
             D R++  A   + W          V  L+VKD ++I  G                   
Sbjct: 10  ELDKRYLRMA---AIWAENSYCKRRQVGALLVKDKMIISDGYNGTPAGFENVCEDENNVT 66

Query: 53  ----PHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE  A+     +   ++GAT YVT  PC        CA+ II+ GI+RVV   +
Sbjct: 67  KPYVLHAEANAITKVAASSNSSKGATIYVTSSPCIE------CAKLIIQSGIKRVVYSEN 120

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESE 133
                    G + L + GIIVD +  +E
Sbjct: 121 YRIA----DGCELLKRAGIIVDYIDLNE 144


>gi|104774442|ref|YP_619422.1| cytosine/adenosine deaminase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116514541|ref|YP_813447.1| cytosine/adenosine deaminase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103423523|emb|CAI98425.1| Cytosine/adenosine deaminase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116093856|gb|ABJ59009.1| tRNA-adenosine deaminase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|325126252|gb|ADY85582.1| Cytidine-deoxycytidylate deaminase [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 169

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 16/101 (15%)

Query: 30  SVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR-----GATAYVTLEPC 79
            +  ++V  DG +IGRG         G  HAE+ A++EA ++           +VTLEPC
Sbjct: 28  PIGAVVVGPDGQIIGRGYNRRELDEDGTAHAEILAIKEACQKLDSWRLIDCNLFVTLEPC 87

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           +       CA  II   I+ V     DP    +G  +   S
Sbjct: 88  AM------CAGAIINSRIKEVYFAAMDPKAGAAGSVVDLFS 122


>gi|251781204|ref|ZP_04824120.1| tRNA-specific adenosine deaminase [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243081651|gb|EES47712.1| tRNA-specific adenosine deaminase [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 152

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 17/122 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
           F+  A   ++  +  +     +  +IVKD IVI +      T      HAE+ A+ EA +
Sbjct: 3   FLDIAKEEAKKAM--SKGEVPIGAVIVKDNIVISKAHNLKETLKDATAHAEILAIREASK 60

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                   G   YVTLEPC        C   II+  I ++ +   + D+   G  +  + 
Sbjct: 61  FLEDWRLNGTEMYVTLEPC------TMCTSAIIQSRISKLHIGTFNKDMGACGSIINLID 114

Query: 121 QK 122
            +
Sbjct: 115 DR 116


>gi|213025788|ref|ZP_03340235.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
          enterica serovar Typhi str. 404ty]
          Length = 98

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 35/94 (37%), Gaps = 12/94 (12%)

Query: 1  MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
          M     D   +M  AL  ++           V  ++V +  VIG G     G      HA
Sbjct: 1  MSDVELDHEYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHA 58

Query: 56 EVQALEEAGEEAR-----GATAYVTLEPCSHYGR 84
          E+ AL + G   +       T YVTLEPC     
Sbjct: 59 EIMALRQGGLVLQNYRLLDTTLYVTLEPCVMCAG 92


>gi|255628537|gb|ACU14613.1| unknown [Glycine max]
          Length = 182

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 49/131 (37%), Gaps = 26/131 (19%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
           SS    FM  A++ +R  +      P V C+I +DG VI  G            HAE++A
Sbjct: 3   SSETLAFMELAIQQARLAL-DVLEVP-VGCVIAEDGKVIASGRNRTTETRNATRHAEMEA 60

Query: 60  LE--------------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           ++              E  E+    + YVT EPC        CA  +   GI+ V     
Sbjct: 61  IDVLLGQWQKHGLSMSEVAEKFSNCSLYVTCEPCIM------CASALSILGIKEVFYGCS 114

Query: 106 DPDVRVSGRGL 116
           +      G  L
Sbjct: 115 NDKFGGCGSIL 125


>gi|332213485|ref|XP_003255854.1| PREDICTED: tRNA-specific adenosine deaminase 2-like [Nomascus
           leucogenys]
          Length = 191

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 23/126 (18%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
            ++M  A+R ++  +  T     V CL+V +  V+G+G            HAE+ A+++ 
Sbjct: 23  EKWMEEAVRMAKEALENTEV--PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQV 80

Query: 64  GEEARGA-----------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            +  R +             YVT+EPC        CA  +    I  VV    +      
Sbjct: 81  LDWCRQSGKSPSEVFEHTVLYVTVEPCIM------CAAALRLMKIPLVVYGCQNERFGGC 134

Query: 113 GRGLQW 118
           G  L  
Sbjct: 135 GSVLNI 140


>gi|222053168|ref|YP_002535530.1| CMP/dCMP deaminase zinc-binding [Geobacter sp. FRC-32]
 gi|221562457|gb|ACM18429.1| CMP/dCMP deaminase zinc-binding [Geobacter sp. FRC-32]
          Length = 161

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 49/127 (38%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALE-----EAGEEARGATAYVTLEPCS 80
            +  +IV+DG +I RG     G      HAE+ A+             G T YVTLEPC 
Sbjct: 28  PIGAVIVRDGKIIARGHNLREGMQDPSAHAELIAIRRGAKKNGNWRLLGTTLYVTLEPCL 87

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGK 135
                  C   I+   + +VV    DP    +G          L+ +  +V  + E+E  
Sbjct: 88  M------CMGAILLARVEKVVFGCHDPKGGAAGSLYNLSDDSRLNHRVTLVSGIREAECA 141

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 142 ALLSDFF 148


>gi|302691412|ref|XP_003035385.1| hypothetical protein SCHCODRAFT_51868 [Schizophyllum commune H4-8]
 gi|300109081|gb|EFJ00483.1| hypothetical protein SCHCODRAFT_51868 [Schizophyllum commune H4-8]
          Length = 163

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 53/153 (34%), Gaps = 31/153 (20%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV------KDGIVIGRGVTAY-GGCPHAEVQAL--- 60
           M  AL  +      T T   V C++        +  V+  G +    G  HAE  AL   
Sbjct: 1   MRLALAEAARCEP-TPTAFCVGCVLAYRDPSNSEPAVLSTGYSRELPGNTHAEANALTKL 59

Query: 61  -------------------EEAGEEARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRV 100
                                  +  R    Y TLEPCS       PCA  +I  G+RR 
Sbjct: 60  CALTPAEVAARLPSFDPSKASVDDILRQVDVYTTLEPCSIRTSGLAPCADALIAAGVRRC 119

Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
            + V +PD  V   G + L   G+ +  +   E
Sbjct: 120 FIGVGEPDDFVQCEGARKLKDAGVEIVWLKGME 152


>gi|160900241|ref|YP_001565823.1| CMP/dCMP deaminase [Delftia acidovorans SPH-1]
 gi|160365825|gb|ABX37438.1| CMP/dCMP deaminase zinc-binding [Delftia acidovorans SPH-1]
          Length = 475

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  +IVKDG ++G+G  A         HAEV AL +A            T YVTLEPC 
Sbjct: 54  PVGAVIVKDGAIVGQGRNAPVAQGDPTAHAEVLALRDAAARLGNYRLDDCTLYVTLEPC- 112

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS-----QKGIIVDRMMESEGK 135
                  C+  ++   + RVV    +P    +G  L   +         +   ++  E  
Sbjct: 113 -----TMCSGAMLHARLGRVVYGAAEPRTGAAGSVLDVFALPQINHHTQVTRGVLAGECA 167

Query: 136 IFLHAYL 142
             +  + 
Sbjct: 168 ALMSDFF 174


>gi|311745177|ref|ZP_07718962.1| cytidine/deoxycytidylate deaminase family protein [Algoriphagus sp.
           PR1]
 gi|311302345|gb|EAZ81919.2| cytidine/deoxycytidylate deaminase family protein [Algoriphagus sp.
           PR1]
          Length = 147

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 45/146 (30%), Gaps = 17/146 (11%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             +M+ AL+ ++  +        V  +IV    +I R             HAE+ A+  A
Sbjct: 7   EYYMNEALKQAK--IAFEEGEIPVGAVIVLKNRIIARAYNQTEKLNDVTAHAEMLAITSA 64

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                         YVTLEPC        CA  +    I  V     D          + 
Sbjct: 65  ANYMGAKYLNDCKLYVTLEPC------TMCAGALFWSQIGEVHYAAQDEKRGYRKSNPEI 118

Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTR 144
           L  K  +       E +  +  +  +
Sbjct: 119 LHPKTKVFQGPFREESEQLILDFFKK 144


>gi|304410115|ref|ZP_07391734.1| Cytosine deaminase [Shewanella baltica OS183]
 gi|307302173|ref|ZP_07581931.1| Cytosine deaminase [Shewanella baltica BA175]
 gi|304351524|gb|EFM15923.1| Cytosine deaminase [Shewanella baltica OS183]
 gi|306914211|gb|EFN44632.1| Cytosine deaminase [Shewanella baltica BA175]
          Length = 145

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 21/152 (13%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQALE 61
            D  F++AA+  ++   GL      +  ++V DG ++GRG       G    HAE+  LE
Sbjct: 1   MDE-FLAAAIEEAK--QGLAEGGIPIGSVLVIDGKIVGRGHNKRVQKGSSVLHAEMDCLE 57

Query: 62  EAG----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            AG     E + AT Y TL PC        C+  ++  GI +V+V  +            
Sbjct: 58  NAGRFSAAEYQRATLYSTLSPCDM------CSGAVLLYGIPKVIVGENTTFQGPE----A 107

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           ++  +G+ V  +  +E K  +H ++       
Sbjct: 108 YVKSRGVDVTVVDNAECKQLMHDFIANHPTLW 139


>gi|159038151|ref|YP_001537404.1| CMP/dCMP deaminase zinc-binding [Salinispora arenicola CNS-205]
 gi|157916986|gb|ABV98413.1| CMP/dCMP deaminase zinc-binding [Salinispora arenicola CNS-205]
          Length = 162

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 9/134 (6%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTA-YGGCPHAEVQALE 61
           +  D +++  A+  SR       T  SV  +IV   G  +  G +       HAE  A+ 
Sbjct: 5   TRTDRQWLLRAIELSR-GSSPVGTAYSVGAIIVAAAGDQLTEGYSRDTDAHTHAEESAVA 63

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPP-CAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +        +  GAT Y ++EPC+     P  C + I+  GIRRVV  + +P +     G
Sbjct: 64  KVERLAPHPDLTGATLYSSMEPCTSRKSRPRTCTELILAAGIRRVVYALREPPLLAECHG 123

Query: 116 LQWLSQKGIIVDRM 129
            + L   GI V  +
Sbjct: 124 TEVLRSSGIDVIEI 137


>gi|160876335|ref|YP_001555651.1| cytosine deaminase [Shewanella baltica OS195]
 gi|160861857|gb|ABX50391.1| Cytosine deaminase [Shewanella baltica OS195]
 gi|315268524|gb|ADT95377.1| Cytosine deaminase [Shewanella baltica OS678]
          Length = 145

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 21/152 (13%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQALE 61
            D  F++AA+  ++   GL      +  ++V DG ++GRG       G    HAE+  LE
Sbjct: 1   MDE-FLAAAIEEAK--QGLVEGGIPIGSVLVIDGKIVGRGHNKRVQKGSSVLHAEMDCLE 57

Query: 62  EAG----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            AG     E + AT Y TL PC        C+  ++  GI +V+V  +            
Sbjct: 58  NAGRFSAAEYQRATLYSTLSPCDM------CSGAVLLYGIPKVIVGENTTFQGPE----A 107

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           ++  +G+ V  +  +E K  +H ++       
Sbjct: 108 YVKSRGVDVTVVDNAECKQLMHDFIASHPTLW 139


>gi|17554608|ref|NP_498663.1| hypothetical protein R13A5.10 [Caenorhabditis elegans]
 gi|15144367|gb|AAK84461.1|AC006679_2 Hypothetical protein R13A5.10 [Caenorhabditis elegans]
          Length = 153

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 37/110 (33%), Gaps = 16/110 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
            FM  A+  ++  +      P    +IVKDG VIG G            HAEV A+    
Sbjct: 2   EFMKLAIEEAKKGMEKGDGGP-FGAVIVKDGKVIGSGHNMVLVTKDPTAHAEVTAIRNTC 60

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           +     +  G   Y +  PC      P C    +   +  +       D 
Sbjct: 61  KNVDNFDLSGCQLYTSCYPC------PMCMGAALWSRVDAIYYGATSQDA 104


>gi|21673220|ref|NP_661285.1| cytosine deaminase, putative [Chlorobium tepidum TLS]
 gi|21646303|gb|AAM71627.1| cytosine deaminase, putative [Chlorobium tepidum TLS]
          Length = 152

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 60/147 (40%), Gaps = 23/147 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----TAYGGCPHAEVQALEEA-- 63
           M  A R +       S    V  +++  +G++IGRG     T      HAE+ AL  A  
Sbjct: 8   MELAFREAIKA--YESKEVPVGAVVLDPNGLIIGRGYNQVETLSDATAHAEMIALTSAMA 65

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-- 118
               +   G T  VTLEPC      P CA  I+   I RVV    DP +  +G  L    
Sbjct: 66  TIGSKYLEGCTLAVTLEPC------PMCAGAIVLSKISRVVFGAWDPKMGAAGTVLNITA 119

Query: 119 ---LSQKGIIVDRMMESEGKIFLHAYL 142
              L+ +  +   +ME + +  L  + 
Sbjct: 120 CNALNHQPEVYGGIMERKAESLLQDFF 146


>gi|281202068|gb|EFA76273.1| adenosine deaminase [Polysphondylium pallidum PN500]
          Length = 213

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 59/179 (32%), Gaps = 30/179 (16%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA- 63
           +FM  AL  ++    L      V C+IV + IVI  G            HAE++AL+   
Sbjct: 30  KFMKLALNEAKKA--LDEGEVPVGCVIVHNDIVIAAGSNKTNIKKNATRHAEIEALDSIY 87

Query: 64  ----------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                      +       YVT+EPC        CA  +    I  V     +     +G
Sbjct: 88  LSENASKFGGDKLLSDCKLYVTVEPCIM------CAAVLQLAKINIVYFGCYNDKFGGNG 141

Query: 114 RGLQWLSQKGIIV-------DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG 165
             L   S               +M+ +    L  +  ++ +K      +  +  D MI 
Sbjct: 142 SILPVHSIDCFERGHPYNCVSGVMKDQAIHLLQKFYFQENKKAPVPNKRKRIDPDQMIN 200


>gi|300727400|ref|ZP_07060809.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
           bryantii B14]
 gi|299775280|gb|EFI71879.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
           bryantii B14]
          Length = 155

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 17/109 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           FM  A+  S   V  T   P    +IVKDG ++     +         HAE+  + +A +
Sbjct: 6   FMRRAIALSENSV-KTGGGP-FGAVIVKDGEIVAEASNSVTIDNDPTAHAEINCIRKATK 63

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
                +  G   Y + EPC      P C   I    +  +    D  D 
Sbjct: 64  ILKSFDLAGCDIYTSCEPC------PMCLGAIYWAHLDHIYYANDRKDA 106


>gi|121609574|ref|YP_997381.1| CMP/dCMP deaminase [Verminephrobacter eiseniae EF01-2]
 gi|121554214|gb|ABM58363.1| CMP/dCMP deaminase, zinc-binding [Verminephrobacter eiseniae
           EF01-2]
          Length = 482

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 54/131 (41%), Gaps = 18/131 (13%)

Query: 2   PVSSF-DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56
           P+S+  DA +M  AL  +       +    V  ++VKDG +I  G  A         HAE
Sbjct: 24  PMSADPDAHWMRQALAQAEDAA--RAGEVPVGAVVVKDGQLIATGRNAPLARHDPSAHAE 81

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL  A          G + YVTLEPC+       C+  +++  + R+V    DP    
Sbjct: 82  ILALRAAARRLGNYRLDGCSLYVTLEPCAM------CSGALLQARLARLVYGAADPRTGA 135

Query: 112 SGRGLQWLSQK 122
           +G  L      
Sbjct: 136 AGSVLDLFGDA 146


>gi|20089035|ref|NP_615110.1| dCMP deaminase [Methanosarcina acetivorans C2A]
 gi|19913892|gb|AAM03590.1| dCMP deaminase [Methanosarcina acetivorans C2A]
          Length = 150

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 55/154 (35%), Gaps = 43/154 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
           S D  F+  A   +R    L S   +V  +I++D  ++  G                   
Sbjct: 6   SLDEYFLEIAFAVARRATCLRS---NVGAVIMRDKRILSTGYNGAPSGLEHCLEIECIRD 62

Query: 48  ----------AYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G    GAT Y T +PC        CA+ II 
Sbjct: 63  LEKIISGTQKEKCRAVHAEQNAIIQAAIHGVSIAGATIYCTQQPC------TLCAKMIIN 116

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
             I++VV    DPD       L++    G+ V+ 
Sbjct: 117 SNIKKVVYSTPDPDT----DSLEFFRSAGVEVEC 146


>gi|256820484|ref|YP_003141763.1| CMP/dCMP deaminase zinc-binding [Capnocytophaga ochracea DSM 7271]
 gi|256582067|gb|ACU93202.1| CMP/dCMP deaminase zinc-binding [Capnocytophaga ochracea DSM 7271]
          Length = 144

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 54/149 (36%), Gaps = 17/149 (11%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
           + D  FM  AL  ++           V  +I  D  +I +             HAE+QA+
Sbjct: 2   NTDEYFMQKALEEAQLA--FEEDEIPVGAIITIDNRIIAKAHNLTERLNDVTAHAEMQAI 59

Query: 61  EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A     G+   G T Y+TLEPC+       CA  +    + R+V    D     S  G
Sbjct: 60  TMAAHYLGGKYLIGCTMYLTLEPCAM------CAGALYWSQLSRLVYAAPDTHRGYSVMG 113

Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            +   +  ++   + +    +    +  +
Sbjct: 114 GKLHPKTEVVTGILSQEATTLLKQFFQQK 142


>gi|319793607|ref|YP_004155247.1| cmp/dcmp deaminase zinc-binding protein [Variovorax paradoxus EPS]
 gi|315596070|gb|ADU37136.1| CMP/dCMP deaminase zinc-binding protein [Variovorax paradoxus EPS]
          Length = 368

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 22/129 (17%)

Query: 30  SVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEEA------RGATAYVTLEPC 79
            V  ++VKDG VI  G       +    HAE+ AL  AG  A       G   +VTLEPC
Sbjct: 26  PVGAVLVKDGQVIATGRNTPVAQHDPSAHAEINALR-AGASALGNYRLDGCELFVTLEPC 84

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEG 134
           +       CA  ++   + RVV    DP    +G  L       L+ +  +   ++  E 
Sbjct: 85  AM------CAGAMLHSRLARVVFGATDPKTGAAGSVLDLFAEPRLNHRTQVQGGVLAQEC 138

Query: 135 KIFLHAYLT 143
              L  +  
Sbjct: 139 SAVLQGFFQ 147


>gi|300742404|ref|ZP_07072425.1| cytidine/deoxycytidylate deaminase family protein [Rothia
           dentocariosa M567]
 gi|300381589|gb|EFJ78151.1| cytidine/deoxycytidylate deaminase family protein [Rothia
           dentocariosa M567]
          Length = 176

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 57/160 (35%), Gaps = 23/160 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----TAYGGCPHAEVQA 59
           +   R+M  AL   +      +    +  ++V  +G +IG G       +    HAE+ A
Sbjct: 23  AEHERWMRLALDEGKRAA--CAGEIPIGAVVVNAEGEIIGSGHNSREHDHDPTGHAEIHA 80

Query: 60  LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           + +A +  +       T  VT+EPC        CA  I+   I  VV+   +      G 
Sbjct: 81  IRQAAQHLKTWRLEECTLVVTVEPCLM------CAGAILMARIPTVVMGAWEEKTGAVGS 134

Query: 115 GLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKR 149
               L  + +     +   ++  E    +  +   +   +
Sbjct: 135 QYDVLRDRRLGLDVQVYAGVLREECAGLMRTFFEARRPHQ 174


>gi|193213141|ref|YP_001999094.1| CMP/dCMP deaminase zinc-binding [Chlorobaculum parvum NCIB 8327]
 gi|193086618|gb|ACF11894.1| CMP/dCMP deaminase zinc-binding [Chlorobaculum parvum NCIB 8327]
          Length = 152

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 60/147 (40%), Gaps = 23/147 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----TAYGGCPHAEVQALEEA-- 63
           M  A R +       S    V  +++  +G+VIGRG     T      HAE+ AL  A  
Sbjct: 8   MELAFREAIKA--YESKEVPVGAVVLDPNGLVIGRGYNQVETLSDATAHAEMIALTSAMA 65

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ--- 117
               +   G T  VTLEPC      P CA  I+   I RVV    DP +  SG  L    
Sbjct: 66  TLDNKYLEGCTLAVTLEPC------PMCAGAIVLSKISRVVFGAWDPKMGASGTVLNVTG 119

Query: 118 --WLSQKGIIVDRMMESEGKIFLHAYL 142
              L+ +  +   +ME + +  L  + 
Sbjct: 120 CSALNHQPEVYGGIMEHKAESLLQDFF 146


>gi|313902173|ref|ZP_07835582.1| CMP/dCMP deaminase zinc-binding [Thermaerobacter subterraneus DSM
           13965]
 gi|313467573|gb|EFR63078.1| CMP/dCMP deaminase zinc-binding [Thermaerobacter subterraneus DSM
           13965]
          Length = 186

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 58/142 (40%), Gaps = 35/142 (24%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP---------- 53
            +DA FM  A   +R     T     V  ++V+D  ++  G   A  G P          
Sbjct: 43  PWDAYFMELAEVVARRS---TCPRRHVGAVLVRDRRILATGYNGAPPGFPHCTEAGCLMQ 99

Query: 54  --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  A+ +A   G   +G+T Y T  PC H      CA+ +I  G+ RVV 
Sbjct: 100 DGHCVRTIHAEANAILQAALHGVTVKGSTLYTTATPCLH------CAKLLIGAGVVRVVY 153

Query: 103 CVDDPDVRVSGRGLQWLSQKGI 124
               PD R     +++L + GI
Sbjct: 154 RDWYPDPRA----VEFLERAGI 171


>gi|312796599|ref|YP_004029521.1| tRNA-specific adenosine deaminase [Burkholderia rhizoxinica HKI
           454]
 gi|312168374|emb|CBW75377.1| tRNA-specific adenosine deaminase (EC 3.5.4.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 173

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 47/127 (37%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
            V  ++V+   VI +G       +    HAE+ AL  A +        G   YVTLEPC 
Sbjct: 36  PVGAVVVRGDEVIAQGFNQPISTHDPSAHAEMVALRAAAQSLSNYRMPGCELYVTLEPCL 95

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  CA  I+   I RVV    DP     G  +       L+    +V  ++  E  
Sbjct: 96  M------CAGAIMHARIARVVFGAHDPKTGACGSVVDVFSQPRLNHHTSVVGGVLADECS 149

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 150 HELSQFF 156


>gi|326317008|ref|YP_004234680.1| CMP/dCMP deaminase zinc-binding protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323373844|gb|ADX46113.1| CMP/dCMP deaminase zinc-binding protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 484

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 17/124 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D  +M  AL+              V  ++V+ G ++ RG  A         HAE+ AL  
Sbjct: 19  DEDWMRVALQ--EAAEAAARGEIPVGAVVVRGGELVARGSNAPIAGHDPTAHAEIVALRA 76

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A          G T YVTLEPC+       C+  ++   + RVV    D     +G  + 
Sbjct: 77  AAGRLGNYRLDGCTLYVTLEPCAM------CSGAMLHARLDRVVYGAPDAKTGAAGSVVD 130

Query: 118 WLSQ 121
             +Q
Sbjct: 131 LFAQ 134


>gi|113971133|ref|YP_734926.1| cytosine deaminase [Shewanella sp. MR-4]
 gi|113885817|gb|ABI39869.1| Cytosine deaminase [Shewanella sp. MR-4]
          Length = 145

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 21/152 (13%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALE 61
            D  F+ AA+  ++   GL      +  ++V DG ++ RG       G    HAE+  LE
Sbjct: 1   MDE-FLQAAIDEAK--QGLAEGGIPIGSVLVIDGKIVARGHNKRVQQGSAVLHAEMDCLE 57

Query: 62  EAG----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            AG     + + AT Y TL PC        C+  I+  GI +VVV  +            
Sbjct: 58  NAGRLTAADYQKATLYSTLSPCDM------CSGAILLYGIPKVVVGENVTFQGPE----A 107

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           ++  +G+ V  +   E K  +  ++  + +  
Sbjct: 108 YVQSRGVEVTVVDNHECKQLMRDFIAAKPQLW 139


>gi|114048372|ref|YP_738922.1| cytosine deaminase [Shewanella sp. MR-7]
 gi|113889814|gb|ABI43865.1| Cytosine deaminase [Shewanella sp. MR-7]
          Length = 145

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 21/152 (13%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALE 61
            D  F+ AA+  ++   GL      +  ++V DG ++ RG       G    HAE+  LE
Sbjct: 1   MDE-FLQAAIDEAK--QGLAEGGIPIGSVLVIDGKIVARGHNKRVQQGSAVLHAEMDCLE 57

Query: 62  EAG----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            AG     + + AT Y TL PC        C+  I+  GI +VVV  +            
Sbjct: 58  NAGRLTAADYQKATLYSTLSPCDM------CSGAILLYGIPKVVVGENVTFQGPE----A 107

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           ++  +G+ V  +   E K  +  ++  + +  
Sbjct: 108 YVQSRGVEVTVVDNYECKQLMRDFIAAKPQLW 139


>gi|317481165|ref|ZP_07940240.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides sp. 4_1_36]
 gi|316902661|gb|EFV24540.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides sp. 4_1_36]
          Length = 146

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 56/149 (37%), Gaps = 17/149 (11%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
           ++  D+ +M  AL  +    G     P V  ++V    +I R      T      HAE+Q
Sbjct: 1   MALDDSYYMKQALLEAHKA-GERGEVP-VGAVVVCKDRIIARAHNLTETLTDVTAHAEMQ 58

Query: 59  ALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+  A     G+     T YVT+EPC        CA  I    + R+V   +D       
Sbjct: 59  AITAAAATLGGKYLNECTLYVTVEPC------VMCAGAIAWAQMGRLVFGAEDEKRGYQR 112

Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
              Q L  K  +V  ++  E    +  + 
Sbjct: 113 YASQALHPKTQVVKGILADECAALMKEFF 141


>gi|311234063|gb|ADP86917.1| CMP/dCMP deaminase zinc-binding protein [Desulfovibrio vulgaris
           RCH1]
          Length = 214

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 44/124 (35%), Gaps = 18/124 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA----YGGCPHAEVQALEE 62
            R M  AL  +R           V  ++V K G +IGRG            HAE+ AL  
Sbjct: 67  ERLMDEALAEARLAQ--AEGEVPVGAVVVDKAGRIIGRGHNRCLRDNDPSAHAEMVALRM 124

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A          G    VTLEPC        CA  I+   +  VV   +DP        L+
Sbjct: 125 AATTTANYRLGGTFLVVTLEPCLM------CAGAIVHARVEGVVYGAEDPKAGAVTSCLE 178

Query: 118 WLSQ 121
              Q
Sbjct: 179 AFEQ 182


>gi|150402044|ref|YP_001329338.1| CMP/dCMP deaminase zinc-binding [Methanococcus maripaludis C7]
 gi|150033074|gb|ABR65187.1| CMP/dCMP deaminase zinc-binding [Methanococcus maripaludis C7]
          Length = 145

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 58/148 (39%), Gaps = 20/148 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGE 65
           FM  A++ ++  +GL      +  ++V    +IGRG            HAE+ ALE AG 
Sbjct: 4   FMDEAIKEAK--LGLKEGGIPIGAVLVYKNKIIGRGHNRRVQNNSAILHAEMDALENAGR 61

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                 R    Y TL PC        C+  ++   I++VV+  +   +         L +
Sbjct: 62  LTSDVYRNCELYTTLSPCIM------CSGAVLLYKIKKVVIGENKTFLGAE----DLLLK 111

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            G+ V+ + +      +  ++    +  
Sbjct: 112 NGVAVEVLNDERCVKMMKDFIKNNPKLW 139


>gi|297572271|ref|YP_003698045.1| CMP/dCMP deaminase zinc-binding protein [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296932618|gb|ADH93426.1| CMP/dCMP deaminase zinc-binding protein [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 143

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 54/147 (36%), Gaps = 23/147 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP----HAEVQALEEA-- 63
           M  A+  +R        +  V  +I+  DG VIGRG            HAEV AL EA  
Sbjct: 1   MHEAMEIARRAG--ADGDVPVGAVILGPDGGVIGRGWNTREADADPCGHAEVNALREAAR 58

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                   G T  VTLEPC        CA  I+   + RVV    D     +G     L 
Sbjct: 59  ALGRWNLSGCTLVVTLEPC------TMCAGAIVNSRVSRVVFGAWDAKAGAAGSVRDVLR 112

Query: 121 QKGI-----IVDRMMESEGKIFLHAYL 142
              +     ++  + E+E    L  + 
Sbjct: 113 DARLNHVVEVIGGLCEAENVAILQDWF 139


>gi|126175278|ref|YP_001051427.1| cytosine deaminase [Shewanella baltica OS155]
 gi|125998483|gb|ABN62558.1| Cytosine deaminase [Shewanella baltica OS155]
          Length = 145

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 21/152 (13%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQALE 61
            D  F++AA+  ++   GL      +  ++V DG ++GRG       G    HAE+  LE
Sbjct: 1   MDE-FLAAAIEEAK--QGLAEGGIPIGSVLVIDGKIVGRGHNKRVQKGSSVLHAEMDCLE 57

Query: 62  EAG----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            AG     E + AT Y TL PC        C+  ++  GI +V+V  +            
Sbjct: 58  NAGRFSAAEYQRATLYSTLSPCDM------CSGAVLLYGIPKVIVGENTTFQGPE----A 107

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           ++  +G+ V  +  +E K  +H ++       
Sbjct: 108 YVKSRGVDVTVVDNTECKQLMHDFIANHPTLW 139


>gi|317496201|ref|ZP_07954561.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Gemella moribillum M424]
 gi|316913776|gb|EFV35262.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Gemella moribillum M424]
          Length = 153

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAG 64
            +M  AL  +R           V  ++V D  V+ +             HAE+  ++EA 
Sbjct: 6   YYMEMALEEARRAYQ--KGEVPVGAVLVIDDEVVAKAHNTREASQQVLNHAEMLVIKEAC 63

Query: 65  EE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL--- 116
           E+        +  Y T+EPC        C+  I++  +  V+    D      G  +   
Sbjct: 64  EKIGFWRLDNSYLYTTVEPC------VMCSGAIVQARVENVIYGAADVKYGCCGSCIDLV 117

Query: 117 --QWLSQKGIIVDRMMESEGKIFLHAYL 142
                + +  I+  ++E E    +  + 
Sbjct: 118 ANNKFNHQAHIISGVLEEECAALMKDFF 145


>gi|325978643|ref|YP_004288359.1| guanine deaminase [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|325178571|emb|CBZ48615.1| guanine deaminase [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
          Length = 154

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 16/110 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
             +M  A++ +   +      P    +IVKDG +I  G       +    H EV A+ +A
Sbjct: 3   EDYMQKAIQEAYDGIKKGDGGP-FGSVIVKDGEIIASGHNMVLAHHDPTAHGEVTAIRKA 61

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           GE     +  G T + T EPC      P C    +   I ++       D
Sbjct: 62  GEKLGTHDLSGTTLFTTGEPC------PMCLAACLWANIDKIYYGCTIAD 105


>gi|218245366|ref|YP_002370737.1| CMP/dCMP deaminase [Cyanothece sp. PCC 8801]
 gi|257058401|ref|YP_003136289.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 8802]
 gi|218165844|gb|ACK64581.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 8801]
 gi|256588567|gb|ACU99453.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 8802]
          Length = 139

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 58/145 (40%), Gaps = 18/145 (12%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAG-- 64
           M AA+  ++   GL      +  ++VK   +IG+G       G P  HAE+  L  AG  
Sbjct: 1   MKAAIAEAK--QGLQEGGIPIGSVLVKGDQIIGKGHNKRVQDGDPVTHAEIDCLRNAGRI 58

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
              +    Y TL PC        CA  +++ GI++V+               +++   G+
Sbjct: 59  GNYQDTVLYSTLMPCY------LCAGAVVQFGIKKVIAGESQTFPGAR----EFMESHGV 108

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKR 149
            V  +   E +  +  ++ +  +  
Sbjct: 109 EVIDLNLGECQQLMQEFIEKNPQLW 133


>gi|148240547|ref|YP_001225934.1| pyrimidine reductase, riboflavin biosynthesis [Synechococcus sp. WH
           7803]
 gi|147849086|emb|CAK24637.1| Pyrimidine reductase, riboflavin biosynthesis [Synechococcus sp. WH
           7803]
          Length = 228

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 79/227 (34%), Gaps = 24/227 (10%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           +  ++ + L +AVS D  +  A  G+  + G   +  +    A SDA+L+G GTV A   
Sbjct: 1   MTHQTTVRLVLAVSLDGRLAYAQGGASHLGGSGDRRALEEALAWSDAVLIGAGTVRAHRS 60

Query: 206 E--------LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
                    L  R +  +   P   ++    +      + +  L   ++           
Sbjct: 61  SCLIHARDLLEQRQSTGRPQQPALFVVARDVEFPQHWPLFQQPLARYLLSPGGGGAEGFL 120

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
             F                + L  L   G + +++ GGA +  S +    VD + L    
Sbjct: 121 EGFPLAA---------SWAQSLASLAAHGWSRVVLLGGARLCESMLADDAVDELQLTLCP 171

Query: 318 IVIGE--GGIPS---PLEEGYLEKNFMCVRRDYF--GSDVCLEYIGK 357
            V+G   G +P+    L E     +   +       G+++ + Y   
Sbjct: 172 RVLGGPFGWVPANAQALPETLAAADAWLLEHSRPLGGNELLVRYRRN 218


>gi|150395640|ref|YP_001326107.1| CMP/dCMP deaminase zinc-binding [Sinorhizobium medicae WSM419]
 gi|150027155|gb|ABR59272.1| CMP/dCMP deaminase zinc-binding [Sinorhizobium medicae WSM419]
          Length = 149

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 50/121 (41%), Gaps = 17/121 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA-- 63
           FM AAL+ +R           +  +IV +G V+               HAE++A+  A  
Sbjct: 7   FMQAALQEARKAAAR--GEVPIGAVIVHEGEVVAAAGNRTRELNDITAHAEIEAIRMAAT 64

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              GE   GA  YVTLEPC        CA  I    IRR+    +DP       G+++ S
Sbjct: 65  AIGGERLSGADLYVTLEPC------TMCAAAISFARIRRLYYGAEDPKGGAVDNGVRFYS 118

Query: 121 Q 121
            
Sbjct: 119 S 119


>gi|255972217|ref|ZP_05422803.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T1]
 gi|255963235|gb|EET95711.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T1]
          Length = 102

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 11/86 (12%)

Query: 8  ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
            FM  A+  ++   GL      +  +IV+ G +IGRG            HAE+ A++EA
Sbjct: 14 EFFMREAIAEAKKAEGLAEV--PIGAVIVRQGEIIGRGHNLREARQEATAHAEMYAIQEA 71

Query: 64 -----GEEARGATAYVTLEPCSHYGR 84
                        +VTLEPC     
Sbjct: 72 CRGIENWRLEETQLFVTLEPCPMCSG 97


>gi|160914266|ref|ZP_02076487.1| hypothetical protein EUBDOL_00276 [Eubacterium dolichum DSM 3991]
 gi|158433893|gb|EDP12182.1| hypothetical protein EUBDOL_00276 [Eubacterium dolichum DSM 3991]
          Length = 170

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 57/149 (38%), Gaps = 33/149 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV----------------- 46
           ++D  FM  A   ++        N  V   IV D   V+  G                  
Sbjct: 17  TWDEYFMGLAHLSAKRSK---DPNTQVGAAIVNDQHKVVSIGYNGFPNGCHDDDFPWERE 73

Query: 47  -----TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                T Y    HAE+ A+  +    +G + YV+L PC+       CA+ II+ GIRRVV
Sbjct: 74  GDFCATKYPYVVHAELNAILNSSTNLQGCSIYVSLFPCNE------CAKAIIQSGIRRVV 127

Query: 102 VCVDDP-DVRVSGRGLQWLSQKGIIVDRM 129
              D   D   +    + L   G+ + ++
Sbjct: 128 YESDKYADTDGTIASKRMLKAAGVELVQI 156


>gi|121533374|ref|ZP_01665202.1| CMP/dCMP deaminase, zinc-binding [Thermosinus carboxydivorans Nor1]
 gi|121307933|gb|EAX48847.1| CMP/dCMP deaminase, zinc-binding [Thermosinus carboxydivorans Nor1]
          Length = 149

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 53/151 (35%), Gaps = 22/151 (14%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
            D  +M  AL  +R    +      +  ++V DG V+ +             HAE+  ++
Sbjct: 2   DDYDYMGIALEEARKAYAI--GEVPIGAVLVMDGAVVAKAHNRRETWHDATAHAEIIVIQ 59

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           +A +        GA  YVT+EPC      P CA  ++   I R+V    D          
Sbjct: 60  QACKLLGRWRLTGAALYVTIEPC------PMCAGALVNSRIDRLVYGSADYKAGAVESLF 113

Query: 117 QW-----LSQKGIIVDRMMESEGKIFLHAYL 142
                  L+ +  +   +   E    +  + 
Sbjct: 114 NIVQHPALNHRLEVTAGVRADECAEIMRDFF 144


>gi|46579939|ref|YP_010747.1| cytidine/deoxycytidylate deaminase family protein [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449355|gb|AAS96006.1| cytidine/deoxycytidylate deaminase family protein [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 161

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 44/124 (35%), Gaps = 18/124 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA----YGGCPHAEVQALEE 62
            R M  AL  +R           V  ++V K G +IGRG            HAE+ AL  
Sbjct: 14  ERLMDEALAEARLAQ--AEGEVPVGAVVVDKAGRIIGRGHNRCLRDNDPSAHAEMVALRM 71

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A          G    VTLEPC        CA  I+   +  VV   +DP        L+
Sbjct: 72  AATTTANYRLGGTFLVVTLEPCLM------CAGAIVHARVEGVVYGAEDPKAGAVTSCLE 125

Query: 118 WLSQ 121
              Q
Sbjct: 126 AFEQ 129


>gi|254467918|ref|ZP_05081324.1| tRNA-specific adenosine deaminase [beta proteobacterium KB13]
 gi|207086728|gb|EDZ64011.1| tRNA-specific adenosine deaminase [beta proteobacterium KB13]
          Length = 160

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 49/148 (33%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
           +FM AAL  +     L      +  ++  +  +IGRG  +         HAE+ AL +A 
Sbjct: 17  QFMQAALDEAEKARSLDE--IPIGAIVTLNNEIIGRGFNSVIKNSDPTCHAEIMALRDAA 74

Query: 65  EEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV-----DDPDVRVSGR 114
                        YVTLEPC        C   I    +++V            D      
Sbjct: 75  HHLSNYRLPEVNLYVTLEPCIM------CLGAIFHARVKQVYFGAYDTKFHSCDPSQQLV 128

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYL 142
             + ++        ++E E    L  Y 
Sbjct: 129 NNKIINHHTSFEGGILEEECSTLLKNYF 156


>gi|88607031|ref|YP_504931.1| cytidine and deoxycytidylate deaminase family protein [Anaplasma
           phagocytophilum HZ]
 gi|88598094|gb|ABD43564.1| cytidine and deoxycytidylate deaminase family protein [Anaplasma
           phagocytophilum HZ]
          Length = 147

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 54/148 (36%), Gaps = 22/148 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
           +M  A+  +    G       V  L+V++G++I +             HAE+ A+  A +
Sbjct: 6   YMKIAMEEANSSSGEI----PVGALVVRNGVIIAKAHNLTIQNTDPTAHAEIVAIRMACK 61

Query: 66  EAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                   G   YVTLEPC+       C Q I    IRR+     +  +     G Q L 
Sbjct: 62  ALSTHILDGCDIYVTLEPCAM------CTQAISLARIRRIYFGACNEKLGGIENGAQVLK 115

Query: 121 ---QKGIIVDRMMESEGKIFLHAYLTRQ 145
                  +    +E E    L A+  + 
Sbjct: 116 YCLHVPEVYGGFLEQENAELLKAFFKKM 143


>gi|332285213|ref|YP_004417124.1| cytosine deaminase [Pusillimonas sp. T7-7]
 gi|330429166|gb|AEC20500.1| cytosine deaminase [Pusillimonas sp. T7-7]
          Length = 145

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 20/148 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAGE 65
           FM AA++ +R  +GL      +  ++V  G +IGRG       G    H E+ ALE AG 
Sbjct: 4   FMKAAIQEAR--LGLQEGGIPIGSVLVHQGTIIGRGHNRRVQCGSTILHGEMDALENAGR 61

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +     R +  Y TL PC      P C   I+  GI +VV+  +   +         L  
Sbjct: 62  QPASVYRESVLYTTLSPC------PMCTGAILLYGIPKVVIGENQTFMGGE----ALLGA 111

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           + + +  + +      +  ++  + E  
Sbjct: 112 QDVELQVLQDETCIALMRDFIKAKPELW 139


>gi|300172664|ref|YP_003771829.1| tRNA-specific adenosine deaminase [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887042|emb|CBL91010.1| tRNA-specific adenosine deaminase [Leuconostoc gasicomitatum LMG
           18811]
          Length = 165

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 43/122 (35%), Gaps = 17/122 (13%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG 64
            FM  AL  +++          +  +IVKD ++I R             HAE+ A+E A 
Sbjct: 14  YFMQVALNEAKFAEN--DGEVPIGAVIVKDNVIIARAHNHREAEQMATAHAELLAIESAN 71

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                        +VTLEPC        CA  II   I  V    +D     +    Q L
Sbjct: 72  RLLSSWRLEDTALFVTLEPCIM------CAGAIINARIPSVYYGAEDSKGGGTRSLYQLL 125

Query: 120 SQ 121
             
Sbjct: 126 ED 127


>gi|87310393|ref|ZP_01092523.1| hypothetical protein DSM3645_29881 [Blastopirellula marina DSM
           3645]
 gi|87286892|gb|EAQ78796.1| hypothetical protein DSM3645_29881 [Blastopirellula marina DSM
           3645]
          Length = 481

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 12/128 (9%)

Query: 10  FMSAALRFSRW----HVGLTSTNPSVACLIVK-DGIV--IGRGVTAYGGCPHAEVQALEE 62
            M  A+   R     H    S +P V  ++V+ DG +    RG        HAE   LE 
Sbjct: 1   MMEKAIEVMRQSVQEHRPDGSPSPQVGAVLVRPDGSIETAARG--ELRDGNHAEFTLLER 58

Query: 63  --AGEEARGATAYVTLEPCSHYGRSPP-CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
             A E   G   + TLEPC +       CA+ I+   IR V V ++D + +V+G+G+++L
Sbjct: 59  KCAAENLEGCVLFATLEPCLNRNSPKRGCARHIVGARIREVYVGIEDDNPKVAGKGIEYL 118

Query: 120 SQKGIIVD 127
            + G+ V 
Sbjct: 119 RRSGVTVH 126


>gi|317120920|ref|YP_004100923.1| tRNA-adenosine deaminase [Thermaerobacter marianensis DSM 12885]
 gi|315590900|gb|ADU50196.1| tRNA-adenosine deaminase [Thermaerobacter marianensis DSM 12885]
          Length = 207

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 41/101 (40%), Gaps = 15/101 (14%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            V  + V DG +I RG            HAE+  L EA     G    G T YVTLEPC 
Sbjct: 66  PVGAVAVHDGRIIARGHNLRERLGDPTAHAEILVLREAAARLGGWRLEGVTLYVTLEPC- 124

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                P CA  I+   + R+V    DP    +G  +  +  
Sbjct: 125 -----PMCAGAIVLARVPRLVYGAPDPKAGAAGSLMNLVQH 160


>gi|292670885|ref|ZP_06604311.1| deaminase [Selenomonas noxia ATCC 43541]
 gi|292647506|gb|EFF65478.1| deaminase [Selenomonas noxia ATCC 43541]
          Length = 179

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 55/154 (35%), Gaps = 23/154 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
           M  AL  ++    L      +  +I+ K G +I RG     T +    HAE+ A+  A +
Sbjct: 33  MRMALEEAKHAYAL--GEVPIGAVIIDKAGTLIARGCNLRETQHDATAHAELIAIRRACK 90

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                     T YVT+EPC      P CA  I+   I R+V    D             S
Sbjct: 91  SLGRWRLTEMTLYVTIEPC------PMCAGAIVMSRISRIVYGSTDRKAGGCESLFNITS 144

Query: 121 QKGI-----IVDRMMESEGKIFLHAYLTRQVEKR 149
             G+     I   ++  E    +  +   + +  
Sbjct: 145 CPGLNHQPEICAGILADECSAIIKKFFKERRKHY 178


>gi|120602647|ref|YP_967047.1| CMP/dCMP deaminase, zinc-binding [Desulfovibrio vulgaris DP4]
 gi|120562876|gb|ABM28620.1| tRNA-adenosine deaminase [Desulfovibrio vulgaris DP4]
          Length = 161

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 44/124 (35%), Gaps = 18/124 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA----YGGCPHAEVQALEE 62
            R M  AL  +R           V  ++V K G +IGRG            HAE+ AL  
Sbjct: 14  ERLMDEALAEARLAQ--AEGEVPVGAVVVDKAGRIIGRGHNRCLRDNDPSAHAEMVALRM 71

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A          G    VTLEPC        CA  I+   +  VV   +DP        L+
Sbjct: 72  AATTTANYRLGGTFLVVTLEPCLM------CAGAIVHARVEGVVYGAEDPKAGAVTSCLE 125

Query: 118 WLSQ 121
              Q
Sbjct: 126 AFEQ 129


>gi|300811153|ref|ZP_07091665.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497857|gb|EFK32867.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 171

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 16/101 (15%)

Query: 30  SVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR-----GATAYVTLEPC 79
            +  ++V  DG +IG+G         G  HAE+ A++EA ++         + +VTLEPC
Sbjct: 28  PIGAVVVGPDGQIIGQGYNRRELDEDGTAHAEILAIKEACQKLDSWRLIDCSLFVTLEPC 87

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           +       CA  II   I+ V     DP    +G  +   S
Sbjct: 88  AM------CAGAIINSRIKEVYFAAMDPKAGAAGSVVDLFS 122


>gi|229496208|ref|ZP_04389928.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316786|gb|EEN82699.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
           endodontalis ATCC 35406]
          Length = 151

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 52/150 (34%), Gaps = 17/150 (11%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEV 57
            + + D R M AAL  +       +    +  ++V  G ++GRG            HAE+
Sbjct: 6   SIQTEDERAMRAALDEAYLAK--EAGEVPIGAVVVYQGRIVGRGRNRVEQLQDPTAHAEI 63

Query: 58  QALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+  A E          T YV+LEPC        C   +    + R+V    DP     
Sbjct: 64  LAITAATENLGAKYLTDCTLYVSLEPC------VMCMGALRWAQVSRIVYATSDPKAGYH 117

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
               +    + +I       E    L ++ 
Sbjct: 118 VLAPKAPHPRAVIEVGPFGDEAAGLLRSFF 147


>gi|260061052|ref|YP_003194132.1| putative cytosine/adenosine deaminase [Robiginitalea biformata
           HTCC2501]
 gi|88785184|gb|EAR16353.1| putative cytosine/adenosine deaminase [Robiginitalea biformata
           HTCC2501]
          Length = 149

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 57/153 (37%), Gaps = 22/153 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
           M +   DA FM  AL+ +     +G       V  +I     VI R             H
Sbjct: 1   MELILDDAFFMRKALQEAEAAFDLGEV----PVGAVITVRDRVIARAHNLTEKLNDVTAH 56

Query: 55  AEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AE+QA+  A     G+     T YVTLEPC        CA  +    + RVV    DP  
Sbjct: 57  AEMQAITAAANFLGGKYLTDCTLYVTLEPC------QMCAGALYWSQVSRVVYGAPDP-Q 109

Query: 110 RVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
           R        L  + ++   ++E+E    L  + 
Sbjct: 110 RGFTAMGGKLHPRTLVTPGILEAEAAALLKRFF 142


>gi|325286553|ref|YP_004262343.1| CMP/dCMP deaminase zinc-binding protein [Cellulophaga lytica DSM
           7489]
 gi|324322007|gb|ADY29472.1| CMP/dCMP deaminase zinc-binding protein [Cellulophaga lytica DSM
           7489]
          Length = 149

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 49/146 (33%), Gaps = 18/146 (12%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
            D  FM  AL  ++           V  +IV    +I R             HAE+QA+ 
Sbjct: 6   DDTYFMKKALEEAQAA--YDKGEVPVGAVIVIKDRIIARAHNLTEQLNDVTAHAEMQAIT 63

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A     G+     T YVTLEPC        CA  +    I ++V    D     +    
Sbjct: 64  SAANFLGGKYLENCTLYVTLEPCQM------CAGALYWSQISKIVYAAKDVKRGFTAMST 117

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYL 142
               +  I    ++E E    L  + 
Sbjct: 118 TLHPKTKI-SGGLLEKEASELLKRFF 142


>gi|126655546|ref|ZP_01726985.1| cytosine deaminase [Cyanothece sp. CCY0110]
 gi|126623025|gb|EAZ93730.1| cytosine deaminase [Cyanothece sp. CCY0110]
          Length = 145

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 19/150 (12%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQALE 61
            D  F+ AA+  ++  +  T   P +  ++VKD  +IGRG       G P  HAE+  L 
Sbjct: 3   MDE-FIKAAIAEAKQGL-KTGGIP-IGSVLVKDNKIIGRGHNKRVQEGDPITHAEIDCLR 59

Query: 62  EAG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
            AG     +    Y TL PC        CA  +++  I++V+                ++
Sbjct: 60  NAGRIGSYQDTVLYSTLMPCY------LCAGAVVQFNIKKVIAGESKTFTGAK----DFM 109

Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
              G+ V  +  +E K  +  ++       
Sbjct: 110 ESHGVEVIDLDLAECKDLMRQFIENNPRLW 139


>gi|292669313|ref|ZP_06602739.1| deoxycytidylate deaminase [Selenomonas noxia ATCC 43541]
 gi|292649154|gb|EFF67126.1| deoxycytidylate deaminase [Selenomonas noxia ATCC 43541]
          Length = 158

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 53/149 (35%), Gaps = 33/149 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGC----------- 52
           S+D  FM  A+  +         +  V   IV +   ++G G                  
Sbjct: 4   SWDEYFMGVAIFSAYRSK---DPHTQVGACIVNEDKHIVGVGYNGMPNGCDDSVYPWGRT 60

Query: 53  -----------PHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                       HAE+ A+  A    +G   YV+L PC+       C + II+ GIR VV
Sbjct: 61  GDFADQKYPYVVHAELNAILNASTSLKGCRIYVSLFPCNE------CCKAIIQSGIREVV 114

Query: 102 VCVDDPDVRVSGR-GLQWLSQKGIIVDRM 129
              D      S +   + L+  G+   RM
Sbjct: 115 YLSDKYAATDSTKASKRMLASAGVTCRRM 143


>gi|294658696|ref|XP_002770827.1| DEHA2F15488p [Debaryomyces hansenii CBS767]
 gi|202953318|emb|CAR66350.1| DEHA2F15488p [Debaryomyces hansenii]
          Length = 147

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 61/153 (39%), Gaps = 24/153 (15%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALE 61
            D + M  A   ++   G+    P    LI +DG ++GRG            H E+  LE
Sbjct: 4   DDKQGMKIAFEEAKKKGGV----PIGGALIHEDGTILGRGHNMRFQSSSATLHGEISTLE 59

Query: 62  EAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            AG   +G      T Y TL PC        C    I  GI+RVV+  +D  V       
Sbjct: 60  NAG-RLKGSIYKKCTMYTTLSPCHM------CTGACIMYGIKRVVLGENDNFVGGE---- 108

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
             L QKGI V  + + + K  +  ++  + E  
Sbjct: 109 DLLKQKGIEVVNLNDKDCKDLMSKFIKERPEDW 141


>gi|306821661|ref|ZP_07455259.1| tRNA-specific adenosine deaminase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550406|gb|EFM38399.1| tRNA-specific adenosine deaminase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 153

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 17/125 (13%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALE 61
           ++ +FM  AL  +            V C+IVK   VI               HAE+ A++
Sbjct: 2   YEEKFMKKALSNAIRAYIQDEV--PVGCVIVKGDEVIASTYNTKKATKSAINHAEILAID 59

Query: 62  EAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           EA  +           YVTLEPC        C   I++  I++V +   D  +      +
Sbjct: 60  EASRKLGRFILDDCDMYVTLEPCLM------CTGAILQSRIKKVYIGATDESMGAFVSKI 113

Query: 117 QWLSQ 121
             +  
Sbjct: 114 ALVKD 118


>gi|88801568|ref|ZP_01117096.1| deoxycytidylate deaminase [Polaribacter irgensii 23-P]
 gi|88782226|gb|EAR13403.1| deoxycytidylate deaminase [Polaribacter irgensii 23-P]
          Length = 141

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 38/142 (26%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
           +D  ++  AL    W          V  LIVK+ ++I  G     G P            
Sbjct: 9   YDRAYLKMALE---WGKLSHCKRKQVGALIVKNRMIISDGF---NGTPTGFENCCEDSSG 62

Query: 54  -------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A+     + + A GAT Y+TL PC+       C++ I + GI+RVV  
Sbjct: 63  NTKWEVLHAEANAILKVASSTQSAEGATLYITLSPCTQ------CSKLIHQAGIKRVVYA 116

Query: 104 VDDPDVRVSGRGLQWLSQKGII 125
               +      GL++L + G+ 
Sbjct: 117 ----NAYKDDAGLKFLEKAGVE 134


>gi|312869691|ref|ZP_07729838.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus oris PB013-T2-3]
 gi|311094740|gb|EFQ53037.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus oris PB013-T2-3]
          Length = 164

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 46/127 (36%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            +  ++VKD  +IGRG            HAE+ A+ EA E            YVTLEPC 
Sbjct: 26  PIGAVVVKDNQIIGRGHNMREHFQDVTYHAEMLAIMEACERLHSWRLEDCDLYVTLEPCI 85

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGK 135
                  C+  II   I  +     DP           L+   +     +   +M++E  
Sbjct: 86  M------CSGAIINARIANLYYGAADPKAGAVDSLYHLLADSRLNHQVRVESGIMQAECS 139

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 140 QVLKEFF 146


>gi|254495568|ref|ZP_05108490.1| cytosine deaminase [Legionella drancourtii LLAP12]
 gi|254355138|gb|EET13751.1| cytosine deaminase [Legionella drancourtii LLAP12]
          Length = 147

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 59/150 (39%), Gaps = 20/150 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQALEEA 63
            R++ AA+  +R    L      +  ++V    +IGRG       G    H E+ ALE A
Sbjct: 4   QRYLEAAIEEARRS--LAEGGIPIGAVLVYQDRIIGRGHNQRVQKGSAILHGEMDALENA 61

Query: 64  GEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           G +       +  Y TL PC+       C+  I+   I  VV+  +   +         L
Sbjct: 62  GRQQAKIYEQSILYTTLSPCAM------CSGAILLYKIPYVVIGENQTFIGEES----LL 111

Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           + +G+ ++ +   +    +  ++T+     
Sbjct: 112 TSRGVKLEVLQNDKCITMMRHFITQNSTLW 141


>gi|291532926|emb|CBL06039.1| Cytosine/adenosine deaminases [Megamonas hypermegale ART12/1]
          Length = 157

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 16/111 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
             FM  A + +  ++  T+       +IVKDG ++GRG       +    HAEV+A+ +A
Sbjct: 4   EEFMLIATQEADSNL-TTNEGGPFGAVIVKDGKIVGRGHNRVLIKHDPTCHAEVEAIRDA 62

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
                  +  G   Y +  PC      P C    I   I++V       D 
Sbjct: 63  CQNLGTHDLTGCELYTSCYPC------PMCLSATIWANIKKVYYGNTAKDA 107


>gi|319953292|ref|YP_004164559.1| cmp/dcmp deaminase zinc-binding protein [Cellulophaga algicola DSM
           14237]
 gi|319421952|gb|ADV49061.1| CMP/dCMP deaminase zinc-binding protein [Cellulophaga algicola DSM
           14237]
          Length = 149

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 55/151 (36%), Gaps = 18/151 (11%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           M +   D  +M  AL+ +   +        V  +IV    +I R             HAE
Sbjct: 1   MILPFDDTYYMKKALQEA--AMAFEKGEVPVGAIIVIQDRIIARAHNLTEQLNDVTAHAE 58

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +QA+  A     G+  +  T YVTLEPC        CA  +    I ++V    D +   
Sbjct: 59  MQAITAAANFLGGKYLKDCTLYVTLEPCQM------CAGALYWSQISKIVYAAKDVERGC 112

Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
              G     +  I+   ++ +E    L  + 
Sbjct: 113 GAMGTTLHPKTKIVG-GVLAAEASAMLKRFF 142


>gi|168184980|ref|ZP_02619644.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           botulinum Bf]
 gi|237793341|ref|YP_002860893.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           botulinum Ba4 str. 657]
 gi|182671972|gb|EDT83933.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           botulinum Bf]
 gi|229261589|gb|ACQ52622.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           botulinum Ba4 str. 657]
          Length = 148

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 17/118 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA-- 63
           ++  A+  ++  + +      V  +IVK+  +I +             HAE+ A++EA  
Sbjct: 4   YIEYAIIEAKKALAI--GEVPVGAIIVKENKIIAKSHNLKESLKDPTAHAEILAIKEACN 61

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                  +G   YVTLEPC+       CA  II+  I  + +   DP     G  +  
Sbjct: 62  TIHNWRLKGCKMYVTLEPCAM------CASAIIQSRISELHIGTFDPVGGACGSVVNI 113


>gi|148378037|ref|YP_001252578.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           botulinum A str. ATCC 3502]
 gi|153931005|ref|YP_001382436.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|153937691|ref|YP_001385989.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           botulinum A str. Hall]
 gi|153941479|ref|YP_001389392.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           botulinum F str. Langeland]
 gi|168181142|ref|ZP_02615806.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           botulinum NCTC 2916]
 gi|226947243|ref|YP_002802334.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           botulinum A2 str. Kyoto]
 gi|148287521|emb|CAL81583.1| putative cytosine deaminase [Clostridium botulinum A str. ATCC
           3502]
 gi|152927049|gb|ABS32549.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|152933605|gb|ABS39104.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           botulinum A str. Hall]
 gi|152937375|gb|ABS42873.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           botulinum F str. Langeland]
 gi|182668031|gb|EDT80010.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           botulinum NCTC 2916]
 gi|226841341|gb|ACO84007.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           botulinum A2 str. Kyoto]
 gi|295317500|gb|ADF97877.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           botulinum F str. 230613]
 gi|322804299|emb|CBZ01849.1| tRNA-specific adenosine-34 deaminase [Clostridium botulinum H04402
           065]
          Length = 145

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 17/118 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA-- 63
           ++  A+  ++  + +      V  +IVK+  +I +             HAE+ A++EA  
Sbjct: 4   YIEYAIIEAKKALAI--GEVPVGAIIVKENKIIAKSHNLKESLKDPTAHAEILAIKEACN 61

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                  +G   YVTLEPC+       CA  II+  I  + +   DP     G  +  
Sbjct: 62  TIHNWRLKGCKMYVTLEPCAM------CASAIIQSRISELHIGTFDPVGGACGSVVNI 113


>gi|313673213|ref|YP_004051324.1| cmp/dcmp deaminase zinc-binding protein [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939969|gb|ADR19161.1| CMP/dCMP deaminase zinc-binding protein [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 154

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 17/115 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
           +   D  FM   ++ ++    L   +  +  ++V DG +I  G     T      HAE+ 
Sbjct: 1   MDDIDLLFMKKTIQVAKRA--LKYDDVPIGAIVVMDGKIIASGYNRKKTTKNPLDHAEII 58

Query: 59  ALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           A+++A  +           Y TLEPC        CA  I+   I+RVV    +P 
Sbjct: 59  AMKKAARKIGDWRLNNCVLYSTLEPCIM------CAGAILHYRIKRVVFGTLEPK 107


>gi|253572102|ref|ZP_04849506.1| cytosine deaminase [Bacteroides sp. 1_1_6]
 gi|298383486|ref|ZP_06993047.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
           1_1_14]
 gi|251838282|gb|EES66369.1| cytosine deaminase [Bacteroides sp. 1_1_6]
 gi|298263090|gb|EFI05953.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
           1_1_14]
          Length = 146

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 53/149 (35%), Gaps = 17/149 (11%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
           ++  D  FM  AL  +            V  ++V    +I R      T      HAE+Q
Sbjct: 1   MTLDDTYFMKQALIEA--GKAAERGEVPVGAVVVCKERIIARAHNLTETLNDVTAHAEMQ 58

Query: 59  ALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+  A     G+     T YVT+EPC        CA  I      ++V   +D       
Sbjct: 59  AITAAANVLGGKYLNECTLYVTVEPC------VMCAGAIAWAQTGKLVFGAEDDKRGYQR 112

Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
              Q L  K ++V  ++  E    +  + 
Sbjct: 113 YAAQALHPKTVVVKGILADECATLMKDFF 141


>gi|269123684|ref|YP_003306261.1| CMP/dCMP deaminase zinc-binding protein [Streptobacillus
           moniliformis DSM 12112]
 gi|268315010|gb|ACZ01384.1| CMP/dCMP deaminase zinc-binding protein [Streptobacillus
           moniliformis DSM 12112]
          Length = 159

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 58/151 (38%), Gaps = 32/151 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D  FM  A   +            V   IVKD  ++G G                   
Sbjct: 8   SWDEYFMGIAFLSANRSK---DPVTQVGACIVKDSKIVGIGYNGFPIGSSDDEVPWEKDG 64

Query: 47  ----TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
               T Y    HAE+ A+  +  + +G+T YVT  PC+       CA+ II+ GI +V+ 
Sbjct: 65  DFLNTKYAYVVHAELNAILNSNRDLKGSTIYVTHFPCNE------CAKSIIQTGISKVIF 118

Query: 103 CVD-DPDVRVSGRGLQWLSQKGIIVDRMMES 132
             D   D   S    + LS  GI + ++   
Sbjct: 119 FSDKHKDKDSSIASKRMLSNAGIEIVKLELE 149


>gi|319760657|ref|YP_004124595.1| tRNA-specific adenosine deaminase [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039371|gb|ADV33921.1| tRNA-specific adenosine deaminase [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 155

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 47/125 (37%), Gaps = 21/125 (16%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
             D  +M  A+  +   V   S N ++  ++V DG ++G G  A    +    HAE+ AL
Sbjct: 6   DMDIIWMRYAITLA--SVAALSGNVAIGAVLVYDGRLVGYGYNAALIFHDPSAHAEIIAL 63

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
              G           T YVT+EPC        C   II   I R+V            R 
Sbjct: 64  RVGGNYLGNYRLLNTTLYVTMEPCIM------CVGAIINARIHRLVCGAIGNK----IRW 113

Query: 116 LQWLS 120
           +  L 
Sbjct: 114 INLLR 118


>gi|225630106|ref|YP_002726897.1| cytidine and deoxycytidylate deaminase family protein [Wolbachia
           sp. wRi]
 gi|225592087|gb|ACN95106.1| cytidine and deoxycytidylate deaminase family protein [Wolbachia
           sp. wRi]
          Length = 135

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 14/140 (10%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEA--GEEA 67
           M  A+  ++      +    +  +IV    +I      +     HAE+ A+ +A      
Sbjct: 1   MELAIEQAKLAQ--KNDEVPIGAVIVSGDNIISSAHNISSDPTAHAEMLAIRQAFSTSTL 58

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD---VRVSGRGLQWLSQKGI 124
                YVTLEPC      P CAQ I    I+R+     +P    +    +  Q+ S    
Sbjct: 59  CDTDMYVTLEPC------PMCAQAISFARIKRLYFGAYNPKGGGIENGAKIFQFCSHIPE 112

Query: 125 IVDRMMESEGKIFLHAYLTR 144
           +   ++E+E    L  +  +
Sbjct: 113 VYGGILETECSFLLKDFFEK 132


>gi|149176588|ref|ZP_01855200.1| hypothetical protein PM8797T_19764 [Planctomyces maris DSM 8797]
 gi|148844467|gb|EDL58818.1| hypothetical protein PM8797T_19764 [Planctomyces maris DSM 8797]
          Length = 180

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 61/198 (30%), Gaps = 43/198 (21%)

Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQ-------VHLLRAQSDAILVGIGTVLADDPELT 208
           IA S D  I         + G  S           H      D +++G  T         
Sbjct: 7   IATSLDGFIARKDGALDWLPGIESPESPEGEDYGYHEFMDSIDVLIMGRNTFET------ 60

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
                         +L         +K +      P+ I  E  D V + +         
Sbjct: 61  --------------VLSFEGDWPYGAKRMFILSSQPITIPNELTDSVESSSSS------- 99

Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
                   +L+  L  RG   + V+GG     SF+ + L+D +I+ R  I+IG  GIP  
Sbjct: 100 ------PGELIEQLAKRGFQHVYVDGG-KTIQSFLRAGLIDELIITRIPILIGS-GIP-L 150

Query: 329 LEEGYLEKNFMCVRRDYF 346
             E   +     +    F
Sbjct: 151 FGEADADIQLKHLETHTF 168


>gi|268680105|ref|YP_003304536.1| cytosine deaminase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618136|gb|ACZ12501.1| Cytosine deaminase [Sulfurospirillum deleyianum DSM 6946]
          Length = 146

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 20/149 (13%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQALEEAG 64
           +F+ AA+  ++   GL      +  ++V DG ++GRG       G    HAE+  LE AG
Sbjct: 4   KFLEAAIEEAQK--GLDEGGIPIGSVLVIDGKIVGRGHNQRVQKGSAILHAEMDCLENAG 61

Query: 65  ----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                + R AT Y TL PC        C+  I+  GI ++V+  +            ++ 
Sbjct: 62  RLSAADYRNATLYSTLSPCDM------CSGAILLYGIPKLVIGENQTFRGPE----AYVK 111

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            +G+ V+ + +S+ +  + A++ +  E  
Sbjct: 112 SRGVDVEVLNDSKCRELMEAFIEKNPELW 140


>gi|29347644|ref|NP_811147.1| putative cytosine/adenosine deaminase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29339545|gb|AAO77341.1| putative cytosine/adenosine deaminase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 147

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 53/149 (35%), Gaps = 17/149 (11%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
           ++  D  FM  AL  +            V  ++V    +I R      T      HAE+Q
Sbjct: 2   MTLDDTYFMKQALIEA--GKAAERGEVPVGAVVVCKERIIARAHNLTETLNDVTAHAEMQ 59

Query: 59  ALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+  A     G+     T YVT+EPC        CA  I      ++V   +D       
Sbjct: 60  AITAAANVLGGKYLNECTLYVTVEPC------VMCAGAIAWAQTGKLVFGAEDDKRGYQR 113

Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
              Q L  K ++V  ++  E    +  + 
Sbjct: 114 YAAQALHPKTVVVKGILADECATLMKDFF 142


>gi|24372975|ref|NP_717017.1| cytosine deaminase [Shewanella oneidensis MR-1]
 gi|24347125|gb|AAN54462.1|AE015583_7 cytosine deaminase [Shewanella oneidensis MR-1]
          Length = 145

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 21/152 (13%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALE 61
            D  F+ AA+  ++   GL      +  ++V DG +I RG       G    HAE+  LE
Sbjct: 1   MDE-FLQAAIDEAK--QGLAEGGIPIGSVLVIDGKIIARGHNKRVQQGSAVLHAEMDCLE 57

Query: 62  EAG----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            AG     + + AT Y TL PC        C+  I+  GI +VVV  +            
Sbjct: 58  NAGRLTAADYQKATLYSTLSPCDM------CSGAILLYGIPKVVVGENVTFQGPE----A 107

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           ++  +G+ V  +   E K  +  ++  + +  
Sbjct: 108 YVQSRGVDVTVVDNPECKQLMRDFIAAKPQLW 139


>gi|224538014|ref|ZP_03678553.1| hypothetical protein BACCELL_02903 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520361|gb|EEF89466.1| hypothetical protein BACCELL_02903 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 144

 Score = 71.1 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 51/146 (34%), Gaps = 17/146 (11%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
            D  +M  AL  +R           V  ++V    +I R      T      HAE+QA+ 
Sbjct: 2   DDNYYMKQALIEARKA--SERGEVPVGAVVVCKDRIIARAHNLTETLTDVTAHAEMQAIT 59

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A     G+     T YVT+EPC        CA  I    + R+V    D          
Sbjct: 60  AAASTLGGKYLNECTLYVTVEPC------VMCAGAIAWAQMGRLVFGAGDEKRGYQRYAS 113

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYL 142
           Q L  K  +   ++  E  + +  + 
Sbjct: 114 QALHPKTAVSQGVLGEECAVLMKDFF 139


>gi|225163582|ref|ZP_03725891.1| CMP/dCMP deaminase zinc-binding [Opitutaceae bacterium TAV2]
 gi|224801817|gb|EEG20104.1| CMP/dCMP deaminase zinc-binding [Opitutaceae bacterium TAV2]
          Length = 202

 Score = 71.1 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 58/163 (35%), Gaps = 23/163 (14%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
            D  +MS A   +            + C+I + G VI         A     HAE+ A+ 
Sbjct: 33  DDVFYMSLAYNQAIDAWRRDEV--PIGCVIERSGEVIASAHNGVESANDPTAHAEMLAIT 90

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV--SGR 114
           +A            T YVT EPC      P C+   +   ++RV   V DP +       
Sbjct: 91  QAASALGDWRLEECTLYVTKEPC------PMCSGATLMSRLKRVCYAVPDPKMGCLGGAT 144

Query: 115 GLQWL----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHIT 153
            L  L       GI    ++E E ++ L  +  ++      ++
Sbjct: 145 DLNALPRVNHHLGITAGGVLEDECRVLLQTFFRQKRSPLPPLS 187


>gi|312220490|emb|CBY00431.1| similar to CMP/dCMP deaminase zinc-binding [Leptosphaeria maculans]
          Length = 179

 Score = 71.1 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 56/149 (37%), Gaps = 25/149 (16%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYG-GCPHAEVQAL----- 60
           ++M  AL  +       S N  V  L+V    G ++ RG T    G  HAE   L     
Sbjct: 19  QYMRLALDQAEKSPPKPS-NFRVGALLVNADTGSILSRGYTLECEGNTHAEQCCLLKFAQ 77

Query: 61  ------EEAGEEARGAT-AYVTLEPCS-HYGRSPPCAQFII-------ECGIRRVVVCVD 105
                 +  GE     T  Y T+EPC+     + PCA  II       E  I++V + V 
Sbjct: 78  AHDLPEDRVGEALPPNTVIYTTMEPCNLRLSGNLPCADRIIRTKSKDGEASIKKVYIGVK 137

Query: 106 DPDVRVSGRG-LQWLSQKGIIVDRMMESE 133
           +P+  V        L   GI    +   E
Sbjct: 138 EPEKFVGENQGRAKLEANGIECIHVSGLE 166


>gi|53712256|ref|YP_098248.1| deoxycytidylate deaminase [Bacteroides fragilis YCH46]
 gi|60680433|ref|YP_210577.1| putative deoxycytidylate deaminase [Bacteroides fragilis NCTC 9343]
 gi|253563708|ref|ZP_04841165.1| deoxycytidylate deaminase [Bacteroides sp. 3_2_5]
 gi|265762444|ref|ZP_06091012.1| ComE operon protein 2 [Bacteroides sp. 2_1_16]
 gi|52215121|dbj|BAD47714.1| deoxycytidylate deaminase [Bacteroides fragilis YCH46]
 gi|60491867|emb|CAH06625.1| putative deoxycytidylate deaminase [Bacteroides fragilis NCTC 9343]
 gi|251947484|gb|EES87766.1| deoxycytidylate deaminase [Bacteroides sp. 3_2_5]
 gi|263255052|gb|EEZ26398.1| ComE operon protein 2 [Bacteroides sp. 2_1_16]
 gi|301161966|emb|CBW21510.1| putative deoxycytidylate deaminase [Bacteroides fragilis 638R]
          Length = 145

 Score = 71.1 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 58/154 (37%), Gaps = 38/154 (24%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
             S  D R++  A   S W          V  LIVKD ++I  G     G P        
Sbjct: 7   KQSDLDKRYIRMA---SIWSENSYCQRRKVGALIVKDKMIISDGY---NGTPSGFENVCE 60

Query: 54  -----------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                      HAE  A   +  +   + GAT YVT  PC        CA+ II+ GI+R
Sbjct: 61  DDNNVTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CAKLIIQAGIKR 114

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
           VV             G++ L + GI V  +  SE
Sbjct: 115 VVYSEHYRL----EDGIELLKRAGIEVVFVDTSE 144


>gi|94498766|ref|ZP_01305314.1| CMP/dCMP deaminase, zinc-binding protein [Sphingomonas sp. SKA58]
 gi|94421775|gb|EAT06828.1| CMP/dCMP deaminase, zinc-binding protein [Sphingomonas sp. SKA58]
          Length = 152

 Score = 71.1 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 51/146 (34%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEE 66
           M  AL  +R           +  ++ +DG++IG G            HAE+ A+  A   
Sbjct: 11  MRRALELARAAQAANEV--PIGAVVTRDGVIIGEGENRNRRDCDPTAHAEMVAMRAAAVR 68

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS- 120
                  G   +VTLEPC      P CA  I    I R+     DP      +G +    
Sbjct: 69  LHDFRLTGCDLWVTLEPC------PMCAGAISHARIARLYYGAADPKGGAIEQGPRLFMQ 122

Query: 121 ----QKGIIVDRMMESEGKIFLHAYL 142
                +  +   + E+E    L  + 
Sbjct: 123 PQCLHRPEVYAGLAEAEASALLRDFF 148


>gi|291459912|ref|ZP_06599302.1| cytidine/deoxycytidylate deaminase family protein [Oribacterium sp.
           oral taxon 078 str. F0262]
 gi|291417253|gb|EFE90972.1| cytidine/deoxycytidylate deaminase family protein [Oribacterium sp.
           oral taxon 078 str. F0262]
          Length = 179

 Score = 71.1 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 54/148 (36%), Gaps = 38/148 (25%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-------------------IV 41
           +P S      M  A+R ++      + +  + CLIV DG                    +
Sbjct: 4   LPYSP--EELMRLAIREAKKAE--RNGDVPIGCLIVYDGRLPGSRADQRAEEQSIRPGEI 59

Query: 42  IGRGVTAYG----GCPHAEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFI 92
           IGRG            HAE+ A+ +A            T  VTLEPC      P CA  I
Sbjct: 60  IGRGYNRRNRDKSALKHAEISAISKACRRLGDWRLEDCTMIVTLEPC------PMCAGAI 113

Query: 93  IECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           ++  I R++   ++P     G  L  L 
Sbjct: 114 LQARIPRLLFGAENPKAGFCGSVLDILQ 141


>gi|220919666|ref|YP_002494969.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Methylobacterium nodulans ORS 2060]
 gi|219952086|gb|ACL62477.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Methylobacterium nodulans ORS 2060]
          Length = 240

 Score = 71.1 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 87/240 (36%), Gaps = 38/240 (15%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAI---------LVGIGTV 200
             I   +  S D  +          T   +      LR   D +         +VG  T+
Sbjct: 3   PKIICHMVSSIDGRL-----HPSRFTVPAAGVDGDRLRRHYDEVAARFGAQGWMVGRKTM 57

Query: 201 --LADDPELTCRLNGLQEHSP---------MRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
             +A     T    G+    P         + + +DPH ++      +    +  V +++
Sbjct: 58  QEIAKGAARTPAGAGVSSREPFVGNRKGRDLAVAIDPHGRVHYGQDHVLGDHV--VAVLS 115

Query: 250 ENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFINSR 306
           E          R+  ++ ++   D  DL++ +  L    GV ++L++GGA++  +F+  R
Sbjct: 116 EAVSDAYLAELREDGVSYLFAGPDGTDLRRAMDALGQTFGVETILLQGGASINGAFLKQR 175

Query: 307 LVDSIILYRSQIVIGEGGIPSPL-------EEGYLEKNFMCVRRDYF-GSDVCLEYIGKN 358
           L+D I L     + G  G+PS         E     +    +  +   G  V L Y  ++
Sbjct: 176 LIDEISLLIQPAIDGLAGVPSIFGYEGSADERPGAGQALRHLHTETLEGGMVWLRYRVED 235


>gi|86140825|ref|ZP_01059384.1| putative cytosine/adenosine deaminase [Leeuwenhoekiella blandensis
           MED217]
 gi|85832767|gb|EAQ51216.1| putative cytosine/adenosine deaminase [Leeuwenhoekiella blandensis
           MED217]
          Length = 151

 Score = 71.1 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 55/146 (37%), Gaps = 18/146 (12%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--TAYGG--CPHAEVQALE 61
            D  FM  AL+ +     L      V  ++  +  +I R    T        HAE+QA+ 
Sbjct: 8   DDHYFMKKALQEAETAFEL--GEIPVGAVVTVNNRIIARAHNLTERLHDVTAHAEMQAIT 65

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A     G+    +T YVTLEPC        CA  +    I R+V    D   R   +  
Sbjct: 66  AAANFLGGKYLTDSTLYVTLEPCQM------CAGALYWSQISRIVFGAADT-TRGYQKMG 118

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYL 142
             L  K  +   +ME+E    L  + 
Sbjct: 119 TQLHPKTQVTSGIMETEAAQLLKRFF 144


>gi|300781046|ref|ZP_07090900.1| riboflavin biosynthesis protein RibD [Corynebacterium genitalium
           ATCC 33030]
 gi|300532753|gb|EFK53814.1| riboflavin biosynthesis protein RibD [Corynebacterium genitalium
           ATCC 33030]
          Length = 237

 Score = 71.1 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 67/196 (34%), Gaps = 20/196 (10%)

Query: 166 MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILD 225
            AG  S  +        +  LR  +D ILVG GTV A+D             +P+ ++  
Sbjct: 56  TAGGTSEELGNDTDSQVLAALREWADVILVGSGTVKAED--------YGPADTPIAVV-S 106

Query: 226 PHFKLSLDSKIIKTALLAPVIIV-----TENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
                   + +       P+I+      T+        A  +   +++        +++ 
Sbjct: 107 RSLNFDTSAILF--GGAPPLILTPEASLTDTALADRRQALTRAGCSLVSTGEGGAGEIVE 164

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
            L   G   ++ EGG ++        L+D + L       GE   P+ L+ G    N   
Sbjct: 165 KLRELGYGRIICEGGPSLYADMFAHSLIDVLHLTIDPRTNGE---PAGLQ-GDFTVNLEL 220

Query: 341 VRRDYFGSDVCLEYIG 356
            +    GS +   Y  
Sbjct: 221 EQVQTDGSFLFARYRR 236


>gi|170755371|ref|YP_001779653.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           botulinum B1 str. Okra]
 gi|169120583|gb|ACA44419.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           botulinum B1 str. Okra]
          Length = 145

 Score = 71.1 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 17/118 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA-- 63
           ++  A+  +   + +      V  +IVK+  +I +             HAE+ A++EA  
Sbjct: 4   YIEYAIIEAEKALAI--GEVPVGAIIVKENKIIAKSHNLKESLKDPTAHAEILAIKEACN 61

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                  +G   YVTLEPC+       CA  II+  I  + +   DP     G  +  
Sbjct: 62  TIHNWRLKGCKMYVTLEPCAM------CASAIIQSRISELHIGTFDPVGGACGSVVNI 113


>gi|147921095|ref|YP_685094.1| dCMP deaminase [uncultured methanogenic archaeon RC-I]
 gi|110620490|emb|CAJ35768.1| dCMP deaminase [uncultured methanogenic archaeon RC-I]
          Length = 167

 Score = 71.1 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 55/159 (34%), Gaps = 43/159 (27%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
           M   S D  FM  A   S+    L      V  +IVK+G +I  G               
Sbjct: 1   MSRPSKDEYFMEIAQVVSKRSTCLRL---HVGAVIVKNGQIISTGYNGAPHGFDHCLDIG 57

Query: 47  -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE  A+ +A   G    GA  Y T +PC        C +
Sbjct: 58  CIRENQNIAHGTRHELCRAVHAEQNAIIQAAIHGASIEGAAVYCTHQPCI------LCTK 111

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            II   I+RVV   + PD       L +L Q G+ V RM
Sbjct: 112 MIINGKIKRVVYLNEYPDT----SSLDFLKQAGVEVVRM 146


>gi|145511355|ref|XP_001441605.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124408855|emb|CAK74208.1| unnamed protein product [Paramecium tetraurelia]
          Length = 158

 Score = 71.1 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 15/113 (13%)

Query: 1   MPVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVT----AYGGCP 53
           M +   D  ++M  AL  +   +G  +    V C+IV   DG ++ +       +     
Sbjct: 1   MELQKEDILKYMKMALEQAE--LGRQNKEVPVGCVIVNRNDGKIVEKAYNNTNKSKNATQ 58

Query: 54  HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           H E+  +     +      +VT EPC   G      Q +    I  V    ++
Sbjct: 59  HCEIICINRMNRDLEDCILFVTCEPCIMCG------QALNYVKIHSVYYGCNN 105


>gi|91975752|ref|YP_568411.1| CMP/dCMP deaminase, zinc-binding [Rhodopseudomonas palustris BisB5]
 gi|91682208|gb|ABE38510.1| tRNA-adenosine deaminase [Rhodopseudomonas palustris BisB5]
          Length = 148

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 54/147 (36%), Gaps = 22/147 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA-- 63
           FM  AL  +    G +   P + C+IV+ G VI        T      HAE+ A+ EA  
Sbjct: 6   FMDLALA-AANIAGRSGEVP-IGCVIVRGGEVIATAGNRTLTDRDPTAHAELLAIREAAQ 63

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-- 118
               E       YVTLEPC        CA  I    IRR+     DP       G+++  
Sbjct: 64  KLGSERLPDCDLYVTLEPC------TMCAGAISFARIRRLYFGAFDPKGGAVESGVRFFG 117

Query: 119 ---LSQKGIIVDRMMESEGKIFLHAYL 142
                    +   + E E    L A+ 
Sbjct: 118 QPTCHHAPEVYSGVGEREAAAMLRAFF 144


>gi|309778050|ref|ZP_07672990.1| probable deoxycytidylate deaminase [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308914187|gb|EFP59987.1| probable deoxycytidylate deaminase [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 164

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 58/152 (38%), Gaps = 33/152 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV----------------- 46
           ++D  FM  A   ++        +  V  +IV D   V+  G                  
Sbjct: 8   TWDEYFMGLAHLSAKRSK---DPSTQVGAVIVSDEHRVVSIGYNGFPNGCSDDEFPWDRE 64

Query: 47  -----TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                T Y    HAE+ A+  +  + +G + YV+L PC+       CA+ II+ GI R+V
Sbjct: 65  GEFGNTKYPYVVHAELNAILNSKHDLKGCSIYVSLFPCNE------CAKAIIQSGISRIV 118

Query: 102 VCVDDP-DVRVSGRGLQWLSQKGIIVDRMMES 132
              D       +    + L   G+ + ++  +
Sbjct: 119 YESDKYGHTEGTIASKRMLRSAGVELVQLPYA 150


>gi|257789865|ref|YP_003180471.1| CMP/dCMP deaminase zinc-binding [Eggerthella lenta DSM 2243]
 gi|317489321|ref|ZP_07947835.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Eggerthella sp. 1_3_56FAA]
 gi|325829718|ref|ZP_08163181.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Eggerthella sp. HGA1]
 gi|257473762|gb|ACV54082.1| CMP/dCMP deaminase zinc-binding [Eggerthella lenta DSM 2243]
 gi|316911566|gb|EFV33161.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Eggerthella sp. 1_3_56FAA]
 gi|325488213|gb|EGC90645.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Eggerthella sp. HGA1]
          Length = 167

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 60/173 (34%), Gaps = 34/173 (19%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIV------------KDGIVIGRGV----TAYG 50
           D  +M  A+  +R    L      +  ++V             +  VI R      T   
Sbjct: 3   DEDYMRMAIEEARRAEELDE--VPIGAVVVYEPIDPGTRRPLAEPQVIARACNLRETTQD 60

Query: 51  GCPHAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
              HAE  AL++A E        G T YVTLEPC        CA  + +  + R V    
Sbjct: 61  PAGHAEFIALKQAAERLGVWRLTGCTVYVTLEPC------VMCAGLMHQARVDRCVYGAA 114

Query: 106 DPDVRV-----SGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHIT 153
           DP         +    + L+     V  ++  E    L ++  R+ +KR    
Sbjct: 115 DPKAGALGTLYAVNADERLNHTFEAVSGVLGDECAELLRSFFARKRKKRMESK 167


>gi|184199963|ref|YP_001854170.1| putative deaminase [Kocuria rhizophila DC2201]
 gi|183580193|dbj|BAG28664.1| putative tRNA-specific adenosine deaminase [Kocuria rhizophila
           DC2201]
          Length = 158

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 55/153 (35%), Gaps = 23/153 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY--GGCP--HAEVQALEE 62
             +M  AL  +   +   S +  +  +++  DG VIG G       G P  HAEV AL E
Sbjct: 13  EGWMDLALSEA--ALTAASGDVPIGAVVLDTDGRVIGTGRNRREECGDPTAHAEVLALRE 70

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A          G T  VTLEPC+       CA  ++   +  VV    DP     G    
Sbjct: 71  AAAHRGEWRLEGCTLVVTLEPCAM------CAGAVVLARVPTVVFGAWDPKAGACGSVFD 124

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQ 145
            +    +     +   + E E    L  +    
Sbjct: 125 IVRDPRLNHWVEVTGGVREDECAALLRDFFRTH 157


>gi|298252974|ref|ZP_06976766.1| cytidine and deoxycytidylate deaminase [Gardnerella vaginalis 5-1]
 gi|297532369|gb|EFH71255.1| cytidine and deoxycytidylate deaminase [Gardnerella vaginalis 5-1]
          Length = 153

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 23/160 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAY----GGCPHA 55
           M +       M+ AL  +R     ++    V  +++  G  +IG+G            HA
Sbjct: 1   MNMRDEIVFAMNQALNLARESA--SAGEVPVGAVVLDGGGNIIGKGANMREQSADPLAHA 58

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           EV A+++A    +       T  VTLEPC      P CA  +++  ++RV+    D  + 
Sbjct: 59  EVLAMKDAAASRKSWNLSDCTLVVTLEPC------PMCAGAVLQTRLKRVIFGAWDAKLG 112

Query: 111 VSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQ 145
             G     L    +     ++  + ESE    L  +   Q
Sbjct: 113 ACGSVWDILRDPHVGSRPEVIGSVCESECAQPLRNFFAHQ 152


>gi|270294540|ref|ZP_06200742.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270276007|gb|EFA21867.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 144

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 54/146 (36%), Gaps = 17/146 (11%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
            D+ +M  AL  +    G     P V  ++V    +I R      T      HAE+QA+ 
Sbjct: 2   DDSYYMKQALLEAHKA-GERGEVP-VGAVVVCKDRIIARAHNLTETLTDVTAHAEMQAIT 59

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A     G+     T YVT+EPC        CA  I    + R+V   +D          
Sbjct: 60  AAAATLGGKYLNECTLYVTVEPC------VMCAGAIAWAQMGRLVFGAEDEKRGYQRYAS 113

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYL 142
           Q L  K  +V  ++  E    +  + 
Sbjct: 114 QALHPKTQVVKGILADECAALMKEFF 139


>gi|262183239|ref|ZP_06042660.1| hypothetical protein CaurA7_04544 [Corynebacterium aurimucosum ATCC
           700975]
          Length = 147

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 53/150 (35%), Gaps = 29/150 (19%)

Query: 11  MSAALRFSRWHVGLTST--NPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEA 63
           M  AL  +R     T+   +  V  ++    G  +  GV           HAEV+A+ +A
Sbjct: 1   MRRALEVAR-----TTPVGDIPVGAVLYDASGNELATGVNRREQLNDPTAHAEVEAIRQA 55

Query: 64  ------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
                 G    G    VTLEPC+       CA  I    +  VV    +P     G  ++
Sbjct: 56  VRVHGDGWRLEGCELVVTLEPCAM------CAGAIQASRVSSVVFGAFEPKTGACGSLVE 109

Query: 118 WLSQKG-----IIVDRMMESEGKIFLHAYL 142
            L   G      +   ++E E    L  + 
Sbjct: 110 VLRAPGALHVPEVRSGVLEEECAELLTGFF 139


>gi|114775692|ref|ZP_01451260.1| cytosine deaminase [Mariprofundus ferrooxydans PV-1]
 gi|114553803|gb|EAU56184.1| cytosine deaminase [Mariprofundus ferrooxydans PV-1]
          Length = 145

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 20/149 (13%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAG 64
           +F+ AA+  +R  +        +  ++V DG ++GRG       G    HAE+  LE+AG
Sbjct: 3   KFLRAAIDEARQGMAEGG--IPIGSVLVIDGEIVGRGHNRRVQQGSAVLHAEMDCLEQAG 60

Query: 65  ----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                + R AT Y TL PC        C+  ++  GI RVVV  +       G    ++ 
Sbjct: 61  RLTAADYRRATLYSTLSPCDM------CSGAVLLYGIPRVVVGENSTFQGPEG----YVR 110

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            +G+ V  + ++E +  +  ++       
Sbjct: 111 SRGVEVVVVDDAECRELMAQFIAANHALW 139


>gi|115452727|ref|NP_001049964.1| Os03g0321900 [Oryza sativa Japonica Group]
 gi|108707878|gb|ABF95673.1| Cytidine and deoxycytidylate deaminase zinc-binding region family
           protein, expressed [Oryza sativa Japonica Group]
 gi|113548435|dbj|BAF11878.1| Os03g0321900 [Oryza sativa Japonica Group]
 gi|218192723|gb|EEC75150.1| hypothetical protein OsI_11352 [Oryza sativa Indica Group]
          Length = 183

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 47/131 (35%), Gaps = 26/131 (19%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE--- 61
            FM  AL  +++   L +    V C+IV+DG VI  G            HAE++A++   
Sbjct: 7   EFMELALEQAKFA--LDNLEVPVGCVIVEDGKVISSGSNKTNATRNATRHAEMEAIDILL 64

Query: 62  -----------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
                      +  E+      YVT EPC        CA  +   GIR V     +    
Sbjct: 65  REWQGMGLDQPQVAEKFARCDLYVTCEPCIM------CAMALSILGIREVYFGCANDKFG 118

Query: 111 VSGRGLQWLSQ 121
             G  +     
Sbjct: 119 GCGSIMSLHQS 129


>gi|171682182|ref|XP_001906034.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941050|emb|CAP66700.1| unnamed protein product [Podospora anserina S mat+]
          Length = 167

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 55/149 (36%), Gaps = 21/149 (14%)

Query: 5   SFDAR-FMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVT-AYGGCPHAEVQAL 60
             D + +M  AL  ++       TN  V  +IV      ++  G T    G  HAE   L
Sbjct: 6   PADHKGYMQLALEQAKKSPPK-PTNYRVGAVIVDTASNEILATGYTLELPGNTHAEQCCL 64

Query: 61  EEAGEE------------ARGATAYVTLEPCS-HYGRSPPCAQFIIEC--GIRRVVVCVD 105
            +  E+                  Y T+EPCS     + PC + +      I+ V V + 
Sbjct: 65  LKLAEKHGVSEENLGDVLPTNLALYTTVEPCSKRLSGNLPCVERVKRLAGCIKTVHVGIL 124

Query: 106 DPDVRVSGRGLQW-LSQKGIIVDRMMESE 133
           +P+  V+    +  L   GI V  +   E
Sbjct: 125 EPETFVAENTGKKSLQDAGIQVVAVEGFE 153


>gi|325954402|ref|YP_004238062.1| CMP/dCMP deaminase zinc-binding protein [Weeksella virosa DSM
           16922]
 gi|323437020|gb|ADX67484.1| CMP/dCMP deaminase zinc-binding protein [Weeksella virosa DSM
           16922]
          Length = 143

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 32/146 (21%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-----------YGGCP- 53
           +D  ++  A  +++           V  +IVKD  +I  G                G   
Sbjct: 9   YDKAYLRIAREWAKLSYCERKK---VGAIIVKDRAIISDGFNGSPSGFDNRCEDENGETK 65

Query: 54  ----HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               HAE  A+     + +  +GAT Y+TL PC        C++ I + GI RVV   D 
Sbjct: 66  WYILHAEANAILKVAASTQSCKGATLYLTLSPC------KDCSKLIHQSGINRVVYMQDY 119

Query: 107 PDVRVSGRGLQWLSQKGIIVDRMMES 132
            DV     GL +L + G++++++ E 
Sbjct: 120 KDVE----GLDFLHKAGVVIEQIPEE 141


>gi|154248745|ref|YP_001409570.1| CMP/dCMP deaminase zinc-binding [Fervidobacterium nodosum Rt17-B1]
 gi|154152681|gb|ABS59913.1| CMP/dCMP deaminase zinc-binding [Fervidobacterium nodosum Rt17-B1]
          Length = 170

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 56/159 (35%), Gaps = 43/159 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP---------- 53
           S+D  F   A   +      T  +  V  LIVKD  ++  G      G P          
Sbjct: 23  SWDEYFKRLAKVIAERS---TCVHRKVGALIVKDKRILATGYNQPPSGFPHCDEIGCIRD 79

Query: 54  ----------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  AL +A   G    GAT YVT +PCS       CA+ II 
Sbjct: 80  DLSIPSGKNQEICYGLHAEQNALIQAAKFGISTDGATIYVTHKPCSV------CARLIIN 133

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
            GI++VV     PD         +    GI +    + E
Sbjct: 134 AGIKKVVYIEGYPDPLTD----FFFKTCGIELVGGDQIE 168


>gi|182435251|ref|YP_001822970.1| hypothetical protein SGR_1458 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326775890|ref|ZP_08235155.1| bifunctional deaminase-reductase domain protein [Streptomyces cf.
           griseus XylebKG-1]
 gi|178463767|dbj|BAG18287.1| putative hydrolase [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326656223|gb|EGE41069.1| bifunctional deaminase-reductase domain protein [Streptomyces cf.
           griseus XylebKG-1]
          Length = 262

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 64/186 (34%), Gaps = 12/186 (6%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD------ 203
             +   +  + D         S PI+          LR  +D ++ G  TV  +      
Sbjct: 42  PWLRANMVSTLDG-AAQHDGRSQPISCAADMRIFGTLRGLADVVVAGAETVRQEGYRPAR 100

Query: 204 --DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
             +     R    Q  +P   ++    +L     +    L+  +++           A R
Sbjct: 101 AREAFAARRAAAGQGPAPAVAVVSGSLELDFALPLFTEPLVPTLVVTGAGAPADRIAAAR 160

Query: 262 KKNINIIYCDC---RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
           +    ++        D  +L+  L GRG+T  L EGG  +   F+ + ++D + L  S +
Sbjct: 161 EAGAEVVIAGEGTRVDPARLVRELAGRGLTRQLTEGGPRLLGQFVAAGVLDELCLTLSPM 220

Query: 319 VIGEGG 324
           +     
Sbjct: 221 LTAGDA 226


>gi|170017868|ref|YP_001728787.1| cytosine/adenosine deaminase [Leuconostoc citreum KM20]
 gi|169804725|gb|ACA83343.1| Cytosine/adenosine deaminase [Leuconostoc citreum KM20]
          Length = 169

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 44/123 (35%), Gaps = 17/123 (13%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG 64
            FM  AL  +   +        +  +IVK+  +I +             HAE+ A+E+A 
Sbjct: 14  YFMQVALNEA--SIAFNEGEVPIGAVIVKNNQIIAKAHNHREAEQLATAHAELMAIEKAN 71

Query: 65  EEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
            + +         +VTLEPC        CA  II   I  V    DD     +    + L
Sbjct: 72  LKLKSWRLENTALFVTLEPC------VMCAGAIINSRIPAVYYGADDVKGGATRSLYRLL 125

Query: 120 SQK 122
              
Sbjct: 126 EDA 128


>gi|303237160|ref|ZP_07323730.1| guanine deaminase [Prevotella disiens FB035-09AN]
 gi|302482547|gb|EFL45572.1| guanine deaminase [Prevotella disiens FB035-09AN]
          Length = 155

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 37/113 (32%), Gaps = 17/113 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
              M  A+  S   V           +I KDG +I  G            HAEV  + +A
Sbjct: 4   EELMRRAIELSENSVRNGGG--PFGAVIAKDGEIIAEGSNRVTIDNDPTAHAEVCTIRKA 61

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
            E     + +G   Y + EPC      P C   I    + ++    D  D   
Sbjct: 62  CEKLGTFDLKGCVIYTSCEPC------PMCFGAIYWAHLEKIYYANDRKDAGK 108


>gi|119356459|ref|YP_911103.1| tRNA-adenosine deaminase [Chlorobium phaeobacteroides DSM 266]
 gi|119353808|gb|ABL64679.1| tRNA-adenosine deaminase [Chlorobium phaeobacteroides DSM 266]
          Length = 153

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 58/157 (36%), Gaps = 27/157 (17%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHA 55
           M  +     +M+ A + +   V        V  ++   +G ++G+G            HA
Sbjct: 1   MNFT----HYMAIAFKEALKAV--EKKEVPVGAVVFDSNGNIVGKGYNQVEELSDATAHA 54

Query: 56  EVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ AL  A      +     T  VT+EPC      P CA  ++   I R++    DP + 
Sbjct: 55  EMIALTSAMATLNTKYLDDCTIAVTMEPC------PMCAGALVNAKIGRLIFGAYDPKMG 108

Query: 111 VSGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
            +G  L       L+    +   +ME +    L  + 
Sbjct: 109 AAGTVLNITGCRELNHNPEVFGGIMEQQCSGLLQDFF 145


>gi|283783769|ref|YP_003374523.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Gardnerella vaginalis 409-05]
 gi|283442021|gb|ADB14487.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Gardnerella vaginalis 409-05]
          Length = 153

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 23/160 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHA 55
           M +       M+ AL  +R     ++    V  +++   G +IG+G            HA
Sbjct: 1   MNMRDEIVFAMNQALNLARESA--SAGEVPVGAVVLDGSGNIIGKGANMREQSADPLAHA 58

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           EV A+++A    +       T  VTLEPC      P CA  +++  ++RV+    D  + 
Sbjct: 59  EVLAMKDAATSRKSWNLSDCTLVVTLEPC------PMCAGAVLQTRLKRVIFGAWDAKLG 112

Query: 111 VSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQ 145
             G     L    +     ++  + E E    L  +   Q
Sbjct: 113 ACGSVWDILRDPHVGSRPEVIGSVCEPECAQPLRTFFAHQ 152


>gi|240281302|gb|EER44805.1| tRNA specific adenosine deaminase [Ajellomyces capsulatus H143]
          Length = 197

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 55/158 (34%), Gaps = 22/158 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL      +    T   V C++V +    G G+        G  HAE  A+EE 
Sbjct: 18  EYFMKKALDMGEEALASGET--PVGCVLVHNDEATGSGMNDTNKSMNGTRHAEFLAIEEV 75

Query: 64  GEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                    R    YVT+EPC        CA  + +  IR V     +     +G  L  
Sbjct: 76  LRNYPRSIFRETDLYVTVEPCIM------CASALRQYQIRHVYFGCANERFGGTGGVLNL 129

Query: 119 LSQKGII-----VDRMMESEGKIFLHAYLTRQVEKRSH 151
            S  GI         +   E  + L  +  ++ E+  +
Sbjct: 130 HSDPGIDPPYGLTGGLFRREAIMLLRRFYIQENERAPN 167


>gi|282866566|ref|ZP_06275609.1| bifunctional deaminase-reductase domain protein [Streptomyces sp.
           ACTE]
 gi|282558613|gb|EFB64172.1| bifunctional deaminase-reductase domain protein [Streptomyces sp.
           ACTE]
          Length = 260

 Score = 70.7 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 63/188 (33%), Gaps = 12/188 (6%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD--DP 205
           +R  +   +  + D         S  I+          LR  +D +LVG  TV  +   P
Sbjct: 40  ERPWLRANMVTTLDG-AAQHDGRSQGISCATDMRIFGTLRGLADVVLVGAETVRLEGYRP 98

Query: 206 ELTCRLNGLQEHSPM------RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
                    +  +          ++     L     +  + L+  ++I           A
Sbjct: 99  ARAREAFAERRAAAGQGPAPAIAVVTASLDLDFSLPLFVSPLVPTLVITGAGAPSDRVHA 158

Query: 260 FRKKNINIIYCDC---RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
            R     +++       +  + +  L  RG T LL EGG  +   F+ + ++D + L  S
Sbjct: 159 ARDAGAEVLFAGEGAVVEPARAVAELAARGHTRLLTEGGPRLLGQFVAADVLDELCLTVS 218

Query: 317 QIVIGEGG 324
            ++   G 
Sbjct: 219 PMLTAGGA 226


>gi|289547972|ref|YP_003472960.1| CMP/dCMP deaminase zinc-binding protein [Thermocrinis albus DSM
           14484]
 gi|289181589|gb|ADC88833.1| CMP/dCMP deaminase zinc-binding protein [Thermocrinis albus DSM
           14484]
          Length = 156

 Score = 70.7 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 17/128 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
           +      F+ A L  +          P V C++VK+G +I R             HAE+ 
Sbjct: 1   MKDSHEPFVKACLLEAHRA-FRKGEIP-VGCVVVKEGRIIARAHNRTIALKDPTAHAEIL 58

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+ +A ++       G T YVTLEPC+       CA  ++   + +V+    D  +    
Sbjct: 59  AIRKALKKLGESFLYGCTLYVTLEPCAM------CAYALVLARVDKVIFLAQDEKLGAVM 112

Query: 114 RGLQWLSQ 121
                L +
Sbjct: 113 SLYNLLDE 120


>gi|255941100|ref|XP_002561319.1| Pc16g10090 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585942|emb|CAP93679.1| Pc16g10090 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 148

 Score = 70.7 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 21/146 (14%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCPHAEVQALEEAGEEA 67
           AA+  ++   GL+     +   +V KDG ++GRG            HAE+ ALE +G   
Sbjct: 9   AAVEEAK--QGLSEGGVPIGAALVSKDGKILGRGHNMRVQKGSAVLHAEMSALENSGRLP 66

Query: 68  ----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
                GAT Y TL PC        C    I   ++RVV+  +   +       + L  KG
Sbjct: 67  ASAYEGATMYTTLSPCDM------CTGACILYKVKRVVIGENKNFMGGE----ELLLNKG 116

Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKR 149
             V  +  +E K F+  ++  + E  
Sbjct: 117 KEVVVLDNAECKEFMTKFMKEKPELW 142


>gi|309806673|ref|ZP_07700669.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus iners LactinV 03V1-b]
 gi|308166978|gb|EFO69161.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lactobacillus iners LactinV 03V1-b]
          Length = 148

 Score = 70.7 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 52/155 (33%), Gaps = 23/155 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           M  A   +            +  +IV  +G +IGRG            HAE+ A++EA +
Sbjct: 1   MKLAFLEADKAEQQ--GEIPIGAVIVDAEGNLIGRGYNRRELDEDATRHAEIIAIQEACK 58

Query: 66  EAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                     + +VTLEPC      P CA  II   ++ V     DP     G  +   +
Sbjct: 59  NLNSWRLIDCSLFVTLEPC------PMCAGAIINARLKNVYYGAFDPKAGACGSVVDLFA 112

Query: 121 -----QKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
                    I   +   +    L  +     ++  
Sbjct: 113 FTKFNHHPQIFGGLYREQAAQQLKNFFKNIRQQNR 147


>gi|241889023|ref|ZP_04776327.1| tRNA-specific adenosine deaminase [Gemella haemolysans ATCC 10379]
 gi|241864272|gb|EER68650.1| tRNA-specific adenosine deaminase [Gemella haemolysans ATCC 10379]
          Length = 165

 Score = 70.7 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
            +M  AL  +R           +  ++V    V+ +             HAE+  ++E+ 
Sbjct: 17  YYMEMALEEARRA--YAKGEVPIGAVLVIGDKVVAKAHNTREENQQALNHAEILVIKESC 74

Query: 65  EE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL--- 116
           E+        +  Y T+EPC        C+  I++  I  V+    DP     G  +   
Sbjct: 75  EKQGFWRLDNSYLYTTVEPC------VMCSGAIVQARIENVIYGASDPKYGCCGSCIDLV 128

Query: 117 --QWLSQKGIIVDRMMESEGKIFLHAYL 142
                + +  I+  ++E E  I +  + 
Sbjct: 129 GENKFNHQAKIISGVLEEECSILMKNFF 156


>gi|88803350|ref|ZP_01118876.1| guanine deaminase [Polaribacter irgensii 23-P]
 gi|88780916|gb|EAR12095.1| guanine deaminase [Polaribacter irgensii 23-P]
          Length = 157

 Score = 70.7 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 16/111 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FMSAA++ +   +      P   C+IVKDG +IG G            HAEV A+ +A
Sbjct: 5   EEFMSAAVKAALKGMNNNEGGP-FGCIIVKDGAIIGSGNNKVTSTNDPTAHAEVTAIRDA 63

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
            +     +  G   Y + EPC      P C   I      +V    +  D 
Sbjct: 64  CKNIGSFQLDGCIIYTSCEPC------PMCLGAIYWARPDKVYYGSNQQDA 108


>gi|159037993|ref|YP_001537246.1| deaminase-reductase domain-containing protein [Salinispora
           arenicola CNS-205]
 gi|157916828|gb|ABV98255.1| bifunctional deaminase-reductase domain protein [Salinispora
           arenicola CNS-205]
          Length = 412

 Score = 70.7 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 67/197 (34%), Gaps = 15/197 (7%)

Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
           LH           H  L    S D  +      S  +T    +    L++  +D +L+G 
Sbjct: 176 LHERFAVPPPTEGHTRLVAVASVDG-LAAVHGSSTALTSTGDQRVYRLIKRDADLLLLGA 234

Query: 198 GTVLADD--------PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV---- 245
            T+ A+         PE+  R        P   ++     L L   + +           
Sbjct: 235 ATIRAERYGQTILSAPEVARRRANGLPPYPAVAVVTRSLDLDLTGPLFRRGTGRHTPPRP 294

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           I++              ++  I+     D  L + + +L  RG   ++ EGG ++A    
Sbjct: 295 ILIVPAAAATDGNTAVAEHAEILVAGEHDVDLTRAVRLLQDRGHRRIVCEGGPSLAGQMA 354

Query: 304 NSRLVDSIILYRSQIVI 320
            + L+D I L  +  V+
Sbjct: 355 QADLLDEICLTIAPQVL 371


>gi|190571610|ref|YP_001975968.1| cytidine and deoxycytidylate deaminase family protein [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|190357882|emb|CAQ55341.1| cytidine and deoxycytidylate deaminase family protein [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
          Length = 141

 Score = 70.7 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 14/142 (9%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEA--GE 65
           ++M+ A+  ++           +  +IV    +I      +     HAE+  + +A    
Sbjct: 5   QYMALAIEQAKLAQ--KDGEVPIGAVIVNGNNIISSAHNISNDPTAHAEMLTIRQAFSTS 62

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD---VRVSGRGLQWLSQK 122
               A  YVTLEPC      P CAQ I    I+R+     +P    V    R  Q+ +  
Sbjct: 63  TLYEAEMYVTLEPC------PMCAQAISFAKIKRLYFGAYNPKGGGVENGTRIFQFCNHI 116

Query: 123 GIIVDRMMESEGKIFLHAYLTR 144
             +   ++E++  + L  +  +
Sbjct: 117 PEVYGGILETKCSLLLKDFFEK 138


>gi|281358294|ref|ZP_06244776.1| CMP/dCMP deaminase zinc-binding [Victivallis vadensis ATCC BAA-548]
 gi|281315121|gb|EFA99152.1| CMP/dCMP deaminase zinc-binding [Victivallis vadensis ATCC BAA-548]
          Length = 434

 Score = 70.7 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 22/154 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV- 57
           ++  D  FM  AL  +R      +    V  + V+DG V+          +    HAE+ 
Sbjct: 1   MNDSDPAFMRLALDEARNAA--AAGEVPVGAVAVRDGRVLATARNRVEERHSAVSHAEIE 58

Query: 58  --QALEEAGEEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
              A+E    + R    T Y+T EPC      P CA  ++     R+V  + DP +   G
Sbjct: 59  LLHAVEAVTGDWRMDEITFYITKEPC------PMCAGALVNARAGRIVFGLADPRMGGCG 112

Query: 114 RGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
             L      G+     +   ++  E +  +  + 
Sbjct: 113 SALDITGHPGVLWHPEVEGGVLAEEAQRIIREFF 146


>gi|78776348|ref|YP_392663.1| CMP/dCMP deaminase, zinc-binding [Sulfurimonas denitrificans DSM
           1251]
 gi|78496888|gb|ABB43428.1| CMP/dCMP deaminase, zinc-binding [Sulfurimonas denitrificans DSM
           1251]
          Length = 145

 Score = 70.7 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 47/132 (35%), Gaps = 36/132 (27%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
           D  F++ A+  ++    ++     V  +IVKDG ++  G                     
Sbjct: 4   DENFINIAIEIAKASKCVSK---QVGAVIVKDGRILSTGYNGTPAGYINCREHWEDKYTH 60

Query: 54  -----------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                      HAE+ A+      G     AT YVTLEPCS   ++      II  GI+R
Sbjct: 61  EHHEWSKTYEIHAEMNAIIWAARKGISIENATIYVTLEPCSECSKN------IIASGIQR 114

Query: 100 VVVCVDDPDVRV 111
           +V          
Sbjct: 115 IVYLKPYEHTHS 126


>gi|34557713|ref|NP_907528.1| cytosine deaminase [Wolinella succinogenes DSM 1740]
 gi|34483430|emb|CAE10428.1| CYTOSINE DEAMINASE [Wolinella succinogenes]
          Length = 145

 Score = 70.7 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 20/149 (13%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQALEEAG 64
           +F+ AAL  ++   GL      +  ++V DG ++GRG       G    HAE+  LE AG
Sbjct: 3   KFLEAALEEAQK--GLDEGGIPIGSVLVIDGKIVGRGHNQRVQKGSSILHAEMDCLENAG 60

Query: 65  ----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                + R AT Y TL PC        C+  I+  GI ++V+  +            ++ 
Sbjct: 61  RLSASDYRKATLYSTLSPCDM------CSGAILLYGIPKLVIGENQTFRGPE----AYVK 110

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            +G+ V  + + + +  + A++ +  E  
Sbjct: 111 SRGVEVKVINDPKCRELMEAFIQKNPELW 139


>gi|120599757|ref|YP_964331.1| cytosine deaminase [Shewanella sp. W3-18-1]
 gi|120559850|gb|ABM25777.1| Cytosine deaminase [Shewanella sp. W3-18-1]
          Length = 145

 Score = 70.7 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 21/152 (13%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALE 61
            D  F+ AA+  ++   GL      +  ++V DG ++ RG       G    HAE+  LE
Sbjct: 1   MDE-FLQAAIDEAK--QGLAEGGIPIGSVLVIDGNIVARGHNKRVQQGSAVLHAEMDCLE 57

Query: 62  EAG----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            AG     + +  T Y TL PC        C+  I+  GI +VVV  +            
Sbjct: 58  NAGRLSAADYQKGTLYSTLSPCDM------CSGAILLYGIPKVVVGENITFQGPE----A 107

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           ++  +G+ V  +   E K  +  ++    +  
Sbjct: 108 YVQSRGVDVTVVDNPECKQLMQDFIANNPKLW 139


>gi|221129263|ref|XP_002158148.1| PREDICTED: similar to tRNA-specific adenosine deaminase [Hydra
           magnipapillata]
          Length = 226

 Score = 70.7 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 46/129 (35%), Gaps = 22/129 (17%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
             + +  FM  AL  ++  V L      V C+I+ D IVI  G            HAE+ 
Sbjct: 39  FQNINEEFMKKALVMAK--VALEKGEVPVGCVIIHDNIVIADGYNDVNRTKNATRHAEII 96

Query: 59  ALEEAG----------EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           ALE+A                   YVT EPC        CA  +   G+++V     +  
Sbjct: 97  ALEKARFYFLQAGKNLNSMSECVLYVTTEPCIM------CAAALRISGLKKVFYGCTNQR 150

Query: 109 VRVSGRGLQ 117
               G  L 
Sbjct: 151 FGGCGSRLD 159


>gi|199599026|ref|ZP_03212433.1| Cytosine/adenosine deaminase [Lactobacillus rhamnosus HN001]
 gi|199590062|gb|EDY98161.1| Cytosine/adenosine deaminase [Lactobacillus rhamnosus HN001]
          Length = 170

 Score = 70.7 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 15/101 (14%)

Query: 30  SVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            +  ++V D  +IGRG     T      HAE+ A++ A            + +VTLEPC 
Sbjct: 29  PIGAVVVHDQQIIGRGYNLRETTQDATQHAEILAIQAACRQLGTWRLEDCSLFVTLEPC- 87

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                P CA  +I   I        DP   V+G     L  
Sbjct: 88  -----PMCAGAMINARIATCYFGATDPKAGVAGTFYNLLED 123


>gi|308275014|emb|CBX31613.1| tRNA-specific adenosine deaminase [uncultured Desulfobacterium sp.]
          Length = 156

 Score = 70.7 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 62/160 (38%), Gaps = 24/160 (15%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV----TAYGGCPH 54
           MPV  +    +M  A++ ++   G     P +  ++V + G V+        T    C H
Sbjct: 1   MPVIMNEHEAYMELAIKEAKKA-GQNCEVP-IGAILVDEKGQVVSLAHNSTITLCDPCAH 58

Query: 55  AEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AE+ AL  A            T YVT+EPC        C   II   ++++V    DP  
Sbjct: 59  AEILALRNACSIVGNYRLLNMTIYVTIEPCIM------CMGAIIHARLKKLVFGAYDPKW 112

Query: 110 RVSGRGL-----QWLSQKGIIVDRMMESEGKIFLHAYLTR 144
             +G          L+ K  I+  + E E K  +  +  +
Sbjct: 113 GAAGSLYNFANDNRLNHKTEIIPGICEKECKDLMQDFFKK 152


>gi|305665590|ref|YP_003861877.1| putative cytosine/adenosine deaminase [Maribacter sp. HTCC2170]
 gi|88710346|gb|EAR02578.1| putative cytosine/adenosine deaminase [Maribacter sp. HTCC2170]
          Length = 149

 Score = 70.7 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 17/155 (10%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           M +   D  FM  AL+ +            +  +IV D  +I R             HAE
Sbjct: 1   MILPFDDTYFMKKALQEAEAA--YEKGEVPIGAIIVIDDRIIARAHNLTEQLNDVTAHAE 58

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +QA+  A     G+  +  T YVTLEPC        CA  +    I ++V    D +   
Sbjct: 59  MQAITAAANFLGGKYLQNCTMYVTLEPCQM------CAGALYWSQISKIVFGAKDTERGC 112

Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQV 146
              G +   +  I    M     ++    ++ R+ 
Sbjct: 113 GAMGTKLHPKTKITGGVMENEASELLKRFFIERRN 147


>gi|307729964|ref|YP_003907188.1| CMP/dCMP deaminase zinc-binding protein [Burkholderia sp. CCGE1003]
 gi|307584499|gb|ADN57897.1| CMP/dCMP deaminase zinc-binding protein [Burkholderia sp. CCGE1003]
          Length = 350

 Score = 70.7 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  ++V+   VI +G      A+    HAE+ AL  A +        G   YVTLEPC 
Sbjct: 202 PVGAVLVRGDEVIAKGFNHPISAHDPSAHAEMVALRAAAQVVENYRLPGCELYVTLEPCL 261

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  CA  I+   I RVV    DP     G  +       L+    +   ++E+E  
Sbjct: 262 M------CAGAIMHARIARVVFGARDPKTGACGSVVDAFANPQLNHHTEVTGGVLENECG 315

Query: 136 IFLHAYL 142
             L ++ 
Sbjct: 316 AALKSFF 322


>gi|153001599|ref|YP_001367280.1| cytosine deaminase [Shewanella baltica OS185]
 gi|217972471|ref|YP_002357222.1| Cytosine deaminase [Shewanella baltica OS223]
 gi|151366217|gb|ABS09217.1| Cytosine deaminase [Shewanella baltica OS185]
 gi|217497606|gb|ACK45799.1| Cytosine deaminase [Shewanella baltica OS223]
          Length = 145

 Score = 70.7 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 21/152 (13%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQALE 61
            D  F++AA+  ++   GL      +  ++V DG ++GRG       G    HAE+  LE
Sbjct: 1   MDE-FLAAAIEEAK--QGLAEGGIPIGSVLVIDGKIVGRGHNKRVQKGSSVLHAEMDCLE 57

Query: 62  EAG----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            AG     E + AT Y TL PC        C+  ++  GI +V+V  +            
Sbjct: 58  NAGRFSAAEYQRATLYSTLSPCDM------CSGAVLLYGIPKVIVGENTTFQGPE----A 107

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           ++  +G+ V  +  +E K  +  ++       
Sbjct: 108 YVKSRGVDVTVVDNAECKQLMQDFIASHPTLW 139


>gi|332880028|ref|ZP_08447712.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332682024|gb|EGJ54937.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 146

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 38/151 (25%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
           +D  +M  A+ +++           V  ++VKD ++I  G     G P            
Sbjct: 12  YDKAYMRMAMEWAKLSYSQRK---QVGAIMVKDRMIISDGY---NGTPTGFDNCCEDEEG 65

Query: 54  -------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A+     + + ++GAT Y+T+ PC        C++ I + GI+RVV  
Sbjct: 66  NTHWFVLHAEANAIMKVAASTQSSQGATLYITMSPCKE------CSKLIYQSGIKRVVYK 119

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
               D      GL +L + G+ +  + E E 
Sbjct: 120 EGYRD----NEGLVFLEKAGVELVHLEEVEQ 146


>gi|37520622|ref|NP_923999.1| putative cytidine and deoxycytidylate deaminase [Gloeobacter
           violaceus PCC 7421]
 gi|35211616|dbj|BAC88994.1| gll1053 [Gloeobacter violaceus PCC 7421]
          Length = 150

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 18/124 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEA 63
            +M  AL  +R   G     P V  L+V   G+++  G            HAE+ A+  A
Sbjct: 6   EWMGMALELAREA-GRVGEVP-VGALVVDASGVLLATGANRRERDYDPTAHAEIVAMRAA 63

Query: 64  GEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
             + R       T YVTLEPC+       CA  I++  +  +V   DDP     G  L  
Sbjct: 64  CAKLRDWRLTDCTLYVTLEPCAM------CAGAILQSRLGLLVYGADDPKAGAVGSVLNL 117

Query: 119 LSQK 122
            +  
Sbjct: 118 PASA 121


>gi|282163607|ref|YP_003355992.1| putative deaminase [Methanocella paludicola SANAE]
 gi|282155921|dbj|BAI61009.1| putative deaminase [Methanocella paludicola SANAE]
          Length = 154

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 43/116 (37%), Gaps = 17/116 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
           D  +M  A+  +R  V            IVKDG V+G              HAE+  + E
Sbjct: 3   DEDYMRLAIEKAREGVRHGQL--PFGACIVKDGKVVGCAHNTILRDKNLTAHAEINTIHE 60

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A       +  G T Y T EPC      P C   +    I R+V      DV++ G
Sbjct: 61  ACHVFDSLDLSGCTIYCTCEPC------PMCLGALGLANIDRIVYGARISDVKMDG 110


>gi|291532344|emb|CBL05457.1| tRNA-adenosine deaminase [Megamonas hypermegale ART12/1]
          Length = 159

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 58/158 (36%), Gaps = 23/158 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALE 61
           D   M  AL  ++    +      +  +I  D G +I RG            HAE+ A+ 
Sbjct: 9   DIEGMKEALIEAKKAFAI--GEIPIGAIICDDKGNIISRGHNLREKTFDATAHAEIVAIR 66

Query: 62  EAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           +A  + +       T YVT+EPC      P CA  I    ++R+V    D          
Sbjct: 67  KACTKLQNWRLSDLTLYVTVEPC------PMCAGAIFSSRLKRLVYGATDWRAGGCESVF 120

Query: 117 Q-----WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
                 WL+ +  I   ++E E  + +  +   + +  
Sbjct: 121 NIVNNHWLNHQTQIRAGVLEDECSLLVKKFFQTRRQNH 158


>gi|170782040|ref|YP_001710372.1| putative hydrolase [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156608|emb|CAQ01759.1| putative hydrolase [Clavibacter michiganensis subsp. sepedonicus]
          Length = 248

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 74/178 (41%), Gaps = 17/178 (9%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
           H+ L    S D  +  A   S  ++  + +  + ++R  +D +LVG GTV A+   L  R
Sbjct: 41  HVRLNFVASVDGSVIGADGTSDSLSSVVDRRILGVIRELADVVLVGAGTVRAERYVLPRR 100

Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA----FRKKNIN 266
                       +      L    +  + A    ++++   +    A+A       + ++
Sbjct: 101 TPLA--------VATSSGDL-EGHRFDQDASPGRLLVLCPPEARDRAVASLGGVPAEIVS 151

Query: 267 IIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
           +      D +     ++  L GRG+T ++ EGG A+A S I +  VD + L  S  ++
Sbjct: 152 VPLGAAADGRMGGDDVVDALRGRGLTHVVCEGGPALAASLIAAGRVDELCLTTSPELV 209


>gi|86609997|ref|YP_478759.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558539|gb|ABD03496.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 224

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 72/222 (32%), Gaps = 15/222 (6%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
            R H+    A S D  I          +       +    AQ  A+++G  T+ A    L
Sbjct: 4   NRPHLVAIFAQSLDGKIAAHRAQRPSFSSPEDYRHLETQAAQQQALIMGAATLRAYGTSL 63

Query: 208 TCRLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
             R   L +          P+ II      +  D    +  L   +    +         
Sbjct: 64  RIRDPELIQRRTAQGLSPQPLTIICSDSGDIPEDLPFFRQPLTRWLWTTPKGSQ---IWQ 120

Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
            R    +I      DL   L  L   G+  + + GG  +  +F+ +  +D + +  + ++
Sbjct: 121 NRTGFEDIWVAADWDLPARLARLRSLGIERVGLLGGGRLLGAFLQAGALDELWVTLAPVL 180

Query: 320 I-GEGGIPSPLEEGYLE---KNFMCVRRDYFGSDVCLEYIGK 357
           + G    P+ +E   ++        +       ++ L Y  +
Sbjct: 181 LSGYADAPASIEGWQVQGSLPQLELLECRRGSKELFLRYRVE 222


>gi|329119731|ref|ZP_08248411.1| tRNA-specific adenosine deaminase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464180|gb|EGF10485.1| tRNA-specific adenosine deaminase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 151

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 22/155 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P     AR M+AAL  +R           V  LIV+DG ++     A         HAE+
Sbjct: 1   PPPDQAARLMAAALDKARQAAAENEV--PVGALIVRDGQILAAAHNACAAQNSVAAHAEI 58

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL  AG+           AY+TLEPC      P CA  +++  I+RV+    +P    +
Sbjct: 59  LALTAAGQSLGTPRLDSCDAYITLEPC------PMCASALMQARIKRVIFAAAEPKSGAA 112

Query: 113 GRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
           G          L+    +   +M  E +  L A+ 
Sbjct: 113 GSVCNLFADTRLNAHTAVFGGIMAEESRTLLQAFF 147


>gi|296329638|ref|ZP_06872123.1| guanine deaminase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674035|ref|YP_003865707.1| guanine deaminase [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296153136|gb|EFG94000.1| guanine deaminase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305412279|gb|ADM37398.1| guanine deaminase [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 156

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 42/115 (36%), Gaps = 16/115 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA 63
             F+  A+  +R  V      P    LIVKDG +I  G     T+     HAEV A+  A
Sbjct: 4   ETFLKRAVDLARDGVNAGVGGP-FGALIVKDGSIIAEGQNNVTTSNDPTAHAEVTAIRNA 62

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            +     +      Y + EPC      P C   I     + V    +  D   +G
Sbjct: 63  CKALGTFQLDDCILYTSCEPC------PMCLGAIYWARPKAVYYAAEHTDAAEAG 111


>gi|324997637|ref|ZP_08118749.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudonocardia
           sp. P1]
          Length = 254

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 43/133 (32%), Gaps = 3/133 (2%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLL 279
           ++      L   S ++   L+  +++        L  ++     +++       DL   +
Sbjct: 112 VVTASGRSLDPASPVLTDTLVPTIVLTCAAAPEDLRRSWADAGADVVLTGDGAVDLPVAV 171

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
             L  RG+  +   GG A+      + LVD + L  +  ++           G       
Sbjct: 172 AELGRRGLRRINCMGGPALFGGLAEAGLVDELRLTLAPFLVSGEAGRIARGAGMDPARLE 231

Query: 340 CVRRDYFGSDVCL 352
            V     G D  L
Sbjct: 232 LVSVVT-GDDTLL 243


>gi|255693361|ref|ZP_05417036.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides
           finegoldii DSM 17565]
 gi|260620838|gb|EEX43709.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides
           finegoldii DSM 17565]
          Length = 149

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 56/157 (35%), Gaps = 38/157 (24%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
             S  D R++  A  ++            V  LIVKD ++I  G     G P        
Sbjct: 6   KQSELDKRYIRMASIWAENSYCQRRK---VGALIVKDKMIISDGY---NGTPSGFENVCE 59

Query: 54  -----------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                      HAE  A   +  +   + GAT YVT  PC        CA+ II+ GI+R
Sbjct: 60  DENNVTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CAKLIIQAGIKR 113

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI 136
           VV             G++ L + GI V      E   
Sbjct: 114 VVYSEHYRL----EDGIELLKRAGIEVIYTEPDEKPA 146


>gi|227547038|ref|ZP_03977087.1| cytidine and deoxycytidylate deaminase [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|227212455|gb|EEI80344.1| cytidine and deoxycytidylate deaminase [Bifidobacterium longum
           subsp. infantis ATCC 55813]
          Length = 177

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 56/153 (36%), Gaps = 24/153 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY--GGCP--HAEVQA 59
            +D   M  AL  +       + +  V  +++   G ++GRG       G P  HAE+ A
Sbjct: 30  EYDEA-MRRALELA--GQAAAAGDVPVGAVVLDAAGQIVGRGYNTREADGDPLAHAEIIA 86

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           + +A +          T  VTLEPC      P CA   I+  I  +     DP +   G 
Sbjct: 87  MRQAAQALGAWNLADCTLAVTLEPC------PMCAGACIQTHIGTIAFGAWDPKLGACGS 140

Query: 115 GLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
                    I     +   ++E E +  L  + 
Sbjct: 141 IWDIPRDPHIGHSPEVHGGVLEGECQSILTDFF 173


>gi|91788312|ref|YP_549264.1| CMP/dCMP deaminase [Polaromonas sp. JS666]
 gi|91697537|gb|ABE44366.1| CMP/dCMP deaminase, zinc-binding protein [Polaromonas sp. JS666]
          Length = 461

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 58/162 (35%), Gaps = 20/162 (12%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  ++V+ G VI  G  A         HAE+ AL  A +            +VTLEPC+
Sbjct: 24  PVGAVVVRHGEVIATGRNAPVDANDPTAHAEIVALRAAAQALGNYRLDECELFVTLEPCA 83

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME-----SEGK 135
                  C+  ++   ++RVV    DP    +G  +   ++  +      +      E  
Sbjct: 84  M------CSGAMLHARLQRVVFGATDPKTGAAGSVINLFAESRLNHQTGWQGGVLAEECG 137

Query: 136 IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
             L A+  R+   +          +D+ +         + G+
Sbjct: 138 ELLQAFFRRRRADKREKFRLNHPLRDDALRTPDAAFDDLPGY 179


>gi|332292166|ref|YP_004430775.1| CMP/dCMP deaminase zinc-binding protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170252|gb|AEE19507.1| CMP/dCMP deaminase zinc-binding protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 149

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 55/146 (37%), Gaps = 18/146 (12%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
            DA FM  AL+ +          P V  ++V D ++I R             HAE+QA+ 
Sbjct: 6   DDAYFMKKALQEA-QAAFDQGEIP-VGAVVVIDNMIIARAHNLTERLTDVTAHAEMQAIT 63

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A     G+  +  T YVTLEPC        CA  +    I R+V    D   R      
Sbjct: 64  SASNFIGGKYLQQCTLYVTLEPCQM------CAGALYWSQIGRIVYGAKDLR-RGYDVMG 116

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYL 142
             L  K  +   ++  E +  +  + 
Sbjct: 117 TILHPKTKVESGVLAQECESIMKRFF 142


>gi|317475163|ref|ZP_07934430.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides eggerthii 1_2_48FAA]
 gi|316908616|gb|EFV30303.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides eggerthii 1_2_48FAA]
          Length = 144

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 53/146 (36%), Gaps = 17/146 (11%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
            D  +M  AL  ++   G     P V  ++V    VI R      T      HAE+QA+ 
Sbjct: 2   DDNYYMKQALLEAQKA-GDRGEVP-VGAVVVCKDRVIARAHNLTETLTDVTAHAEMQAIT 59

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A     G+     T YVT+EPC        CA  I      R+V   +D          
Sbjct: 60  AAASTLGGKYLNECTLYVTVEPC------VMCAGAIAWAQTGRLVFGAEDEKRGYQRYAP 113

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYL 142
             L  K ++V  ++  E    +  + 
Sbjct: 114 HALHPKTVVVKGVLGDECAALMKNFF 139


>gi|87198248|ref|YP_495505.1| tRNA-adenosine deaminase [Novosphingobium aromaticivorans DSM
           12444]
 gi|87133929|gb|ABD24671.1| tRNA-adenosine deaminase [Novosphingobium aromaticivorans DSM
           12444]
          Length = 151

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 49/146 (33%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG-- 64
           M  AL  +            +  ++VKDG V+        T      HAE+ A+  A   
Sbjct: 10  MRLALDEALRAA--DEGEVPIGAVVVKDGKVVAAAHNRPRTLRDPTAHAEMLAIRAAAAQ 67

Query: 65  ---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS- 120
              E   G   +V+LEPC+       CA  I    I RV     DP       G +    
Sbjct: 68  LGQERLEGCDLWVSLEPCAM------CAGAIAHARIARVYYAASDPKGGAVEHGSRVFDQ 121

Query: 121 ----QKGIIVDRMMESEGKIFLHAYL 142
                +  +   M E+E    L  + 
Sbjct: 122 PTCLHRPEVYSGMGEAEAAEMLRTFF 147


>gi|326803497|ref|YP_004321315.1| ComE operon protein 2 [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650126|gb|AEA00309.1| ComE operon protein 2 [Aerococcus urinae ACS-120-V-Col10a]
          Length = 170

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 60/163 (36%), Gaps = 35/163 (21%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M    +D  F+S AL  S      T     V  +IV+D  VI  G               
Sbjct: 1   MKRIPWDQYFLSQALVLSMRS---TCDRLMVGAVIVRDNRVIAGGYNGSVSGETHCSEGG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A+ +    G    GA  YVT  PC       PC + II+ GI+
Sbjct: 58  CYLEDGHCVRTIHAEMNAIIQCAKFGVSTEGAEIYVTHFPCL------PCTKQIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140
           +V    D  +   +   L+   + G+ +  R +E +    LH 
Sbjct: 112 KVSYLYDYHNHPYA---LELYQKTGVTVWKRQLEDDFFHQLHQ 151


>gi|125975000|ref|YP_001038910.1| guanine deaminase [Clostridium thermocellum ATCC 27405]
 gi|256005114|ref|ZP_05430084.1| CMP/dCMP deaminase zinc-binding [Clostridium thermocellum DSM 2360]
 gi|281418582|ref|ZP_06249601.1| CMP/dCMP deaminase zinc-binding [Clostridium thermocellum JW20]
 gi|125715225|gb|ABN53717.1| Guanine deaminase [Clostridium thermocellum ATCC 27405]
 gi|255990965|gb|EEU01077.1| CMP/dCMP deaminase zinc-binding [Clostridium thermocellum DSM 2360]
 gi|281407666|gb|EFB37925.1| CMP/dCMP deaminase zinc-binding [Clostridium thermocellum JW20]
 gi|316939161|gb|ADU73195.1| CMP/dCMP deaminase zinc-binding protein [Clostridium thermocellum
           DSM 1313]
          Length = 154

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 16/109 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           FM  A++ +   +      P    +IVKD  +I R             HAE+ A+ +A +
Sbjct: 4   FMKEAVKEAVSGMRQNHGGP-FGAVIVKDNEIIARAHNEVIKNNDPTDHAEMIAIRKAAK 62

Query: 66  EAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           +           Y + EPC      P C   I    I++V       D 
Sbjct: 63  KLSRFDLGDCELYSSCEPC------PMCFAAIHWAKIKKVYYGCTREDA 105


>gi|296455106|ref|YP_003662250.1| CMP/dCMP deaminase [Bifidobacterium longum subsp. longum JDM301]
 gi|296184538|gb|ADH01420.1| CMP/dCMP deaminase, zinc-binding protein [Bifidobacterium longum
           subsp. longum JDM301]
          Length = 174

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 56/153 (36%), Gaps = 24/153 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY--GGCP--HAEVQA 59
            +D   M  AL  +       + +  V  +++   G ++GRG       G P  HAE+ A
Sbjct: 27  EYDEA-MRRALELA--GQAAAAGDVPVGAVVLDAAGQIVGRGYNTREADGDPLAHAEIIA 83

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           + +A +          T  VTLEPC      P CA   I+  I  +     DP +   G 
Sbjct: 84  MRQAAQALGAWNLADCTLAVTLEPC------PMCAGACIQTHIGTIAFGAWDPKLGACGS 137

Query: 115 GLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
                    I     +   ++E E +  L  + 
Sbjct: 138 IWDIPRDPHIGHSPEVHGGVLEGECQSILTDFF 170


>gi|268575234|ref|XP_002642596.1| Hypothetical protein CBG09150 [Caenorhabditis briggsae]
 gi|187032061|emb|CAP28830.1| hypothetical protein CBG_09150 [Caenorhabditis briggsae AF16]
          Length = 153

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 37/110 (33%), Gaps = 16/110 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
            FM  A+  ++  +      P    +IVKDG VIG G            HAEV A+    
Sbjct: 2   EFMKLAIEEAKKGMVAGDGGP-FGAVIVKDGKVIGSGHNMVLVTKDPTAHAEVTAIRNTC 60

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           +     +  G   Y +  PC      P C    +   +  +       + 
Sbjct: 61  KNVDSFDLSGCQLYTSCYPC------PMCMGAALWSRVDAIYYGATSSEA 104


>gi|255007517|ref|ZP_05279643.1| cytosine deaminase [Bacteroides fragilis 3_1_12]
 gi|313145211|ref|ZP_07807404.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313133978|gb|EFR51338.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 145

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 54/146 (36%), Gaps = 17/146 (11%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
            D+ FM  AL  +    G     P V  ++V    +I R      T      HAE+QA+ 
Sbjct: 3   DDSYFMKQALVEAAKA-GERGEVP-VGAVVVCKERIIARAHNLTETLNDVTAHAEMQAIT 60

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A     G+     T YVT+EPC        CA  I      ++V   +D          
Sbjct: 61  AAANVLGGKYLNECTLYVTVEPC------VMCAGAIAWAQTGKLVFGAEDEKRGYQRYAP 114

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYL 142
           + L  K ++V  ++  E    +  + 
Sbjct: 115 KSLHPKTVVVKGILADECANLMKNFF 140


>gi|332800033|ref|YP_004461532.1| CMP/dCMP deaminase zinc-binding protein [Tepidanaerobacter sp. Re1]
 gi|332697768|gb|AEE92225.1| CMP/dCMP deaminase zinc-binding protein [Tepidanaerobacter sp. Re1]
          Length = 138

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 49/123 (39%), Gaps = 29/123 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            +D  F+  A +        T     V  ++VKD  + G G                   
Sbjct: 4   DWDKYFLEIAFKVRERS---TCPRLQVGAVVVKDNRIKGTGYNGSPSGMDHCDDVGCMIR 60

Query: 54  --------HAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                   HAEV AL E   EE +GAT YVT  PC+       C++ II  GI+RVV  +
Sbjct: 61  GNHCVRTIHAEVNALLECSPEERKGATIYVTARPCAE------CSKLIINSGIKRVVYAI 114

Query: 105 DDP 107
           + P
Sbjct: 115 EYP 117


>gi|189190780|ref|XP_001931729.1| cytidine and deoxycytidylate deaminase zinc-binding domain
           containing protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187973335|gb|EDU40834.1| cytidine and deoxycytidylate deaminase zinc-binding domain
           containing protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 195

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 63/161 (39%), Gaps = 25/161 (15%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYG-GCPHAEVQ 58
           P  +   ++M  AL  ++      S N  V  L+V    G ++ RG T    G  HAE  
Sbjct: 28  PDPNDHLQYMRLALDQAQESPPKPS-NFRVGALLVDADTGDILSRGYTLECEGNTHAEQC 86

Query: 59  AL-----------EEAGEEARGAT-AYVTLEPCS-HYGRSPPCAQFII-------ECGIR 98
            L           E  GE     T  Y T+EPC+     + PCA  II       E  I+
Sbjct: 87  CLLKFAQEHGLPEERVGEALPSNTVIYTTMEPCNLRLSGNMPCADRIIRTKGKDGEQRIK 146

Query: 99  RVVVCVDDPDVRVSGRG-LQWLSQKGIIVDRMMESEGKIFL 138
           +V + V +P+  V      + L + GI    +   E +I  
Sbjct: 147 KVFLGVKEPEKFVGENEGRKKLEEHGIECVHVPGLEERILN 187


>gi|86132518|ref|ZP_01051112.1| cytidine/deoxycytidylate deaminase family protein [Dokdonia
           donghaensis MED134]
 gi|85817079|gb|EAQ38263.1| cytidine/deoxycytidylate deaminase family protein [Dokdonia
           donghaensis MED134]
          Length = 149

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 55/146 (37%), Gaps = 18/146 (12%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
            D  FM  AL+ +          P V  ++V D ++I R             HAE+QA+ 
Sbjct: 6   DDTYFMKKALQEA-QAAFDQGEIP-VGAVVVIDNMIIARAHNLTERLTDVTAHAEMQAIT 63

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A     G+  +  T YVTLEPC        CA  +    I R+V    D   R   +  
Sbjct: 64  SASNYIGGKYLQQCTLYVTLEPCQM------CAGALYWSQIGRIVYGASDER-RGYEKMG 116

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYL 142
             L  K  +   ++  E +  +  + 
Sbjct: 117 TTLHPKTKVERGILAHECEQIMKRFF 142


>gi|116669211|ref|YP_830144.1| tRNA-adenosine deaminase [Arthrobacter sp. FB24]
 gi|116609320|gb|ABK02044.1| tRNA-adenosine deaminase [Arthrobacter sp. FB24]
          Length = 167

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 58/155 (37%), Gaps = 27/155 (17%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
           A +M  AL  +R  +G T   P  A +I  DG ++G G            HAE+ A+ EA
Sbjct: 9   AEWMGLALAEARRALG-TGDVPIGAIVIGPDGDILGTGRNEREAHGDPTAHAEMVAIREA 67

Query: 64  -----------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
                      G      T  VTLEPC+       CA  ++   I RVV    D     +
Sbjct: 68  AARLQSLPQGDGWRLAECTLVVTLEPCAM------CAGAVVLARIPRVVFGAWDEKAGAA 121

Query: 113 GRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
           G     L ++ +     +   + E E    L  + 
Sbjct: 122 GSVFDILRERRLNHWVEVYAGVREQECADLLREFF 156


>gi|319425606|gb|ADV53680.1| Cytosine deaminase [Shewanella putrefaciens 200]
          Length = 145

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 21/152 (13%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALE 61
            D  F+ AA+  ++   GL      +  ++V DG ++ RG       G    HAE+  LE
Sbjct: 1   MDE-FLQAAIDEAK--QGLAEGGIPIGSVLVIDGNIVARGHNKRVQQGSAVLHAEMDCLE 57

Query: 62  EAG----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            AG     + + AT Y TL PC        C+  I+  GI +VVV  +            
Sbjct: 58  NAGRLSAADYQKATLYSTLSPCDM------CSGAILLYGIPKVVVGENITFQGPE----A 107

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           ++  +G+ V  +   E K  +  ++    +  
Sbjct: 108 YVQSRGVDVTVVDNPECKQLMLDFIANNPKLW 139


>gi|146292307|ref|YP_001182731.1| cytosine deaminase [Shewanella putrefaciens CN-32]
 gi|145563997|gb|ABP74932.1| Cytosine deaminase [Shewanella putrefaciens CN-32]
          Length = 145

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 21/152 (13%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALE 61
            D  F+ AA+  ++   GL      +  ++V DG ++ RG       G    HAE+  LE
Sbjct: 1   MDE-FLQAAIDEAK--QGLAEGGIPIGSVLVIDGKIVARGHNKRVQQGSAVLHAEMDCLE 57

Query: 62  EAG----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            AG     + +  T Y TL PC        C+  I+  GI +VVV  +            
Sbjct: 58  NAGRLSAADYQKGTLYSTLSPCDM------CSGAILLYGIPKVVVGENITFQGPE----A 107

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           ++  +G+ V  +   E K  +  ++    +  
Sbjct: 108 YVQSRGVDVTVVDNPECKQLMLDFIANNPKLW 139


>gi|297243273|ref|ZP_06927208.1| cytidine and deoxycytidylate deaminase [Gardnerella vaginalis AMD]
 gi|296888807|gb|EFH27544.1| cytidine and deoxycytidylate deaminase [Gardnerella vaginalis AMD]
          Length = 153

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 61/160 (38%), Gaps = 23/160 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAY----GGCPHA 55
           M +       M+ AL  +R     ++    V  +++  G  +IG+G            HA
Sbjct: 1   MNMRDEIVFAMNQALNLARESA--SAGEVPVGAVVLDGGGNIIGKGANMREQSADPLAHA 58

Query: 56  EVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           EV A+++A            T  VTLEPC      P CA  +++  ++RV+    D  + 
Sbjct: 59  EVLAMKDAAISRKSWNLSDCTLVVTLEPC------PMCAGAVLQTRLKRVIFGAWDAKLG 112

Query: 111 VSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQ 145
             G     L    +     ++  + ESE    L  +   Q
Sbjct: 113 ACGSVWDILRDPHVGSRPEVIGSVCESECARLLRNFFAHQ 152


>gi|170759519|ref|YP_001785356.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169406508|gb|ACA54919.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 145

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 21/146 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
           ++  A+  ++  + +      V  +IVK+  +I +      T      HAE+ ++++A  
Sbjct: 4   YIEYAIIEAKKSLAI--GEVPVGAIIVKENKIIAKSHNLKETLKDPIAHAEILSIKKACN 61

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                  +G   YVTLEPC      P CA  II+  I  + +   DP     G  +   +
Sbjct: 62  ILGDWRLKGCKMYVTLEPC------PMCASAIIQSRISELYIGTFDPVGGACGSAVNITN 115

Query: 121 QKGII----VDRMMESEGKIFLHAYL 142
              +     +  +   E    +  + 
Sbjct: 116 NAHLKSNLNIKWLYNDECSRIITNFF 141


>gi|53802428|ref|YP_112823.1| zinc-binding domain-containing protein [Methylococcus capsulatus
           str. Bath]
 gi|53756189|gb|AAU90480.1| zinc-binding domain protein [Methylococcus capsulatus str. Bath]
          Length = 137

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 22/140 (15%)

Query: 17  FSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEAR---- 68
            +R     T+    +  ++VK+G ++G G       +    HAE+ AL  AG        
Sbjct: 2   LARTAE--TAGEVPIGAVLVKNGEILGEGHNQPISTHDPTAHAEIVALRAAGARLGNYRL 59

Query: 69  -GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-----QWLSQK 122
              T YVTLEPC+       C   I+   + R+V    DP    +   L     ++++ +
Sbjct: 60  VDTTLYVTLEPCAM------CMGAILHARVGRLVFGAADPRRGAAISALRLNEAEFMNHR 113

Query: 123 GIIVDRMMESEGKIFLHAYL 142
             +++ ++  E    L  + 
Sbjct: 114 VELLEGVLAEECSQLLRDFF 133


>gi|291448597|ref|ZP_06587987.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Streptomyces
           roseosporus NRRL 15998]
 gi|291351544|gb|EFE78448.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Streptomyces
           roseosporus NRRL 15998]
          Length = 262

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 63/186 (33%), Gaps = 14/186 (7%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD------- 203
            +   +  + D         S PI+          LR  +D ++ G  TV  +       
Sbjct: 43  WLRANMVSTLDG-AAQHDGRSQPISCAADMRIFGTLRGLADVVIAGAETVRQEGYRPARA 101

Query: 204 -DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV-LALAFR 261
            +     R    Q  +P   ++     L     +  T  L P ++VT    P     A R
Sbjct: 102 REAFAARRAAAGQGPAPAVAVVTGSLDLDFSLPLF-TEPLVPTLVVTGAAAPADRIEAAR 160

Query: 262 KKNINIIYCD---CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
           K    ++        D  +++  L  RG+   L EGG  +   F+ +  +D + L  S +
Sbjct: 161 KAGAEVVIAGDGTRVDPARVVRELAARGLRRQLTEGGPRLLGQFVAAGALDELCLTLSPM 220

Query: 319 VIGEGG 324
           +     
Sbjct: 221 LTAGDA 226


>gi|123448020|ref|XP_001312744.1| Cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Trichomonas vaginalis G3]
 gi|121894602|gb|EAX99814.1| Cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Trichomonas vaginalis G3]
          Length = 171

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 56/162 (34%), Gaps = 26/162 (16%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQAL 60
               ++M  AL+ +       +   +V C+I+ +G VI  G            HAE+   
Sbjct: 16  EMHEKYMQLALKAADDA--FDAGEVAVGCVIIHNGQVIASGGNQTNAKNDATRHAELVTF 73

Query: 61  EEAGEE-------ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           +   E         + +T YVT EPC        CA  I   GI RVV    +      G
Sbjct: 74  KHLKESRSDYKQILKESTLYVTCEPCIM------CASAIKMMGIPRVVYGCLNDRFGGCG 127

Query: 114 RGLQWLSQKGI-------IVDRMMESEGKIFLHAYLTRQVEK 148
                 + + +       ++  ++  E    L  +  R   K
Sbjct: 128 SVYNIHTHEIMPSLPSYDVISGVLGEEAIEALRRFYGRPNPK 169


>gi|255067649|ref|ZP_05319504.1| tRNA-specific adenosine deaminase [Neisseria sicca ATCC 29256]
 gi|255048123|gb|EET43587.1| tRNA-specific adenosine deaminase [Neisseria sicca ATCC 29256]
          Length = 243

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 58/156 (37%), Gaps = 22/156 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57
           P SS    FM AAL  +      +     V  ++V +  +I          +    HAE+
Sbjct: 90  PTSSEMETFMRAALTQAEQSA--SIGEIPVGAVVVSNNQIIAAAHNTCVSDHDISRHAEI 147

Query: 58  -----QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
                           G   Y+TLEPC+       CA  II+  +RRV+    +P    +
Sbjct: 148 RALAAAGAALQNYRLDGCDLYITLEPCAM------CASAIIQARVRRVIYGAAEPKTGAA 201

Query: 113 GRGLQ-----WLSQKGIIVDRMMESEGKIFLHAYLT 143
           G  +       L++   I   ++E E K  L A+  
Sbjct: 202 GSVVNLFANPLLNKHTAIKGGILEDECKAVLQAFFQ 237


>gi|160944642|ref|ZP_02091869.1| hypothetical protein FAEPRAM212_02155 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443826|gb|EDP20830.1| hypothetical protein FAEPRAM212_02155 [Faecalibacterium prausnitzii
           M21/2]
 gi|295104361|emb|CBL01905.1| Deoxycytidylate deaminase [Faecalibacterium prausnitzii SL3/3]
          Length = 159

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 48/145 (33%), Gaps = 34/145 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-------------TAYG 50
           ++D  FM  AL  +         N  V   IV  +  ++  G                  
Sbjct: 8   NWDEYFMGIALLTAMRSK---DPNSQVGACIVSPENKILSLGYNGMPMGCSDDEMPWERE 64

Query: 51  GCP---------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           G P         HAE+ A L  A    +GA  YVTL PC+       C + II+ GI  V
Sbjct: 65  GAPLQTKYMYVCHAELNAILNSAHNNLKGARVYVTLFPCNE------CTKAIIQSGIAEV 118

Query: 101 V-VCVDDPDVRVSGRGLQWLSQKGI 124
           V       D   S          G+
Sbjct: 119 VYYGDKYHDSDSSIAARFMFEHAGV 143


>gi|27376394|ref|NP_767923.1| hypothetical protein blr1283 [Bradyrhizobium japonicum USDA 110]
 gi|27349534|dbj|BAC46548.1| blr1283 [Bradyrhizobium japonicum USDA 110]
          Length = 236

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 54/148 (36%), Gaps = 13/148 (8%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLL 279
           ++LD   K+              V+++TE          R + ++ I+      DL   L
Sbjct: 84  VVLDAQGKIGWGRS--DIGGDPIVVVLTEGVPDSHLAGLRGEGVSYIFAGKSEIDLALAL 141

Query: 280 TIL-VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN- 337
            IL    GV  LLVEGG     +F+ + L+D   L  S  V G  G P        + + 
Sbjct: 142 DILNHELGVKRLLVEGGGVANGAFLRAGLIDEFNLILSPAVDGASGAPFVFSSTEADSDK 201

Query: 338 ------FMCVRRDYFGSDV-CLEYIGKN 358
                          GS V  L Y+ KN
Sbjct: 202 RAPLAAMTLEGVRELGSGVLLLRYLIKN 229


>gi|295132290|ref|YP_003582966.1| cytidine/deoxycytidylate deaminase family protein [Zunongwangia
           profunda SM-A87]
 gi|294980305|gb|ADF50770.1| cytidine/deoxycytidylate deaminase family protein [Zunongwangia
           profunda SM-A87]
          Length = 149

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 56/146 (38%), Gaps = 18/146 (12%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
            D  FM  A   ++  +        V  ++V    +I RG     T      HAE+Q++ 
Sbjct: 6   DDTYFMKKAFEEAQ--IAFEKGEIPVGVVVVIKNRIIARGHNLTETLNDVTAHAEMQSIT 63

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A     G+  +G T YVTLEPC        CA  +    + R+V    D D R   +  
Sbjct: 64  AAASFLGGKYLKGCTMYVTLEPCQM------CAGALYWSQLSRLVFAAKD-DHRGYQKFG 116

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYL 142
             L  K  +   +M +E    L  + 
Sbjct: 117 VQLHPKTEVSQGIMANECSQLLKKFF 142


>gi|319953260|ref|YP_004164527.1| cmp/dcmp deaminase zinc-binding protein [Cellulophaga algicola DSM
           14237]
 gi|319421920|gb|ADV49029.1| CMP/dCMP deaminase zinc-binding protein [Cellulophaga algicola DSM
           14237]
          Length = 146

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 58/148 (39%), Gaps = 38/148 (25%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
           +D  ++  A   S W          V  +IVKD ++I  G     G P            
Sbjct: 9   YDKAYLRMA---SEWGKLSFCKRKQVGAIIVKDRMIISDGY---NGTPTGFENQCEDGDG 62

Query: 54  -------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A+     + +   GAT Y+TL PC        C++ I + GI+RVV  
Sbjct: 63  YTKWYVLHAEANAISKVAASTQSCNGATLYITLSPCKE------CSKLIHQSGIKRVVYQ 116

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMME 131
               D      GLQ+L + G+ +  + E
Sbjct: 117 NGYKD----DSGLQFLQKAGVELVHLPE 140


>gi|296273637|ref|YP_003656268.1| cytosine deaminase [Arcobacter nitrofigilis DSM 7299]
 gi|296097811|gb|ADG93761.1| Cytosine deaminase [Arcobacter nitrofigilis DSM 7299]
          Length = 145

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 61/149 (40%), Gaps = 20/149 (13%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAG 64
           +F+ AA+  ++   G+      +  ++V D  ++GRG       G    HAE+  LE AG
Sbjct: 3   KFLQAAIDEAKK--GIDEGGIPIGSVLVIDDKIVGRGHNRRVQNGSAVLHAEMDCLENAG 60

Query: 65  ----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                + + AT Y TL PC        C+  ++  GI  VV+  +           +++ 
Sbjct: 61  RIKASDYKRATLYSTLSPCDM------CSGAVLLYGIPNVVIGENKTFKGPE----EYVK 110

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            +G+ V  M   E    +  ++    E  
Sbjct: 111 SRGVNVKVMDNQECINLMGTFIKNNPELW 139


>gi|194398441|ref|YP_002036741.1| cytosine/adenosine deaminase [Streptococcus pneumoniae G54]
 gi|194358108|gb|ACF56556.1| Cytosine/adenosine deaminase [Streptococcus pneumoniae G54]
          Length = 106

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 11/86 (12%)

Query: 8  ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
            FM  ALR +   + L      + C+IVKDG +IGRG  A         HAE+ A+E+A
Sbjct: 9  EVFMREALREAE--IALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIEDA 66

Query: 64 GEEAR-----GATAYVTLEPCSHYGR 84
                      T +VT+EPC     
Sbjct: 67 NLSEESWRLLDCTLFVTIEPCVMCSG 92


>gi|163792400|ref|ZP_02186377.1| putative nucleotide deaminase [alpha proteobacterium BAL199]
 gi|159182105|gb|EDP66614.1| putative nucleotide deaminase [alpha proteobacterium BAL199]
          Length = 156

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 16/124 (12%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D + +  A+  S       +T      ++V+DG+++G G     T +    HAEV A+  
Sbjct: 3   DEKHLRRAIELS-QGNAEAATGGPFGAVVVRDGMIVGEGANRVITDFDPTAHAEVVAIRA 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A       +  GA  Y + EPC      P C   I+   I R+V      D    G    
Sbjct: 62  ACRQLGTYDLSGAVIYTSCEPC------PMCLAAILWARIDRMVYANTRADAAAIGFDDA 115

Query: 118 WLSQ 121
           W  +
Sbjct: 116 WFYE 119


>gi|332526241|ref|ZP_08402370.1| tRNA-adenosine deaminase [Rubrivivax benzoatilyticus JA2]
 gi|332110075|gb|EGJ10703.1| tRNA-adenosine deaminase [Rubrivivax benzoatilyticus JA2]
          Length = 188

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 58/156 (37%), Gaps = 26/156 (16%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGV----TAYGGCPHAE 56
             D   M+ AL  ++    L    P V  +I++ G     V+  G     T +    HAE
Sbjct: 9   ERDLHAMAIALDQAQNAW-LVGEVP-VGAVIMRPGPEGPQVLATGYNRPITTHDPTAHAE 66

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL  A              YVTLEPC+       CA  ++    +R+V    DP    
Sbjct: 67  IVALRHAATLLGNYRLPECELYVTLEPCAM------CAMALMHARFKRIVYGAPDPKTGA 120

Query: 112 SGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
           +G  +       L+    IV  +M +E    L  + 
Sbjct: 121 AGSVVDLFADRRLNHHTQIVGGVMAAECGDLLRRFF 156


>gi|319936699|ref|ZP_08011112.1| tRNA-adenosine deaminase [Coprobacillus sp. 29_1]
 gi|319808256|gb|EFW04821.1| tRNA-adenosine deaminase [Coprobacillus sp. 29_1]
          Length = 148

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 17/107 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
           D  +M  A + +     +      +  +IVKD  VI               HAE+ A+++
Sbjct: 3   DIEYMKLAYQEAIKAKDIDEV--PIGAIIVKDDCVIASAYNQKESKRDVTAHAEMLAIQK 60

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
           A +        G T Y TLEPC        C+  II+  I +VV   
Sbjct: 61  ACKILGTWHLDGCTLYSTLEPCMM------CSGAIIQSRIAKVVYGA 101


>gi|294635160|ref|ZP_06713669.1| tRNA-specific adenosine deaminase [Edwardsiella tarda ATCC 23685]
 gi|291091465|gb|EFE24026.1| tRNA-specific adenosine deaminase [Edwardsiella tarda ATCC 23685]
          Length = 182

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 20/138 (14%)

Query: 30  SVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCS 80
            V  ++V D  VIG G     T +    HAE+ AL++ G   +      AT YVTLEPC 
Sbjct: 37  PVGAVLVLDDQVIGEGWNRPITRHDPTAHAEIMALQQGGAVLQNYRLLEATLYVTLEPC- 95

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGK 135
                  CA  ++   IRR+V    D     +G  L  L   G+     +   ++     
Sbjct: 96  -----VMCAGAMVHSRIRRLVYGASDLKTGAAGSLLDVLGHPGMNHRIEVCGGVLAEACA 150

Query: 136 IFLHAYLTRQVEKRSHIT 153
             L  +  ++  ++    
Sbjct: 151 AQLSDFFRQRRAQKRAER 168


>gi|319901309|ref|YP_004161037.1| CMP/dCMP deaminase zinc-binding protein [Bacteroides helcogenes P
           36-108]
 gi|319416340|gb|ADV43451.1| CMP/dCMP deaminase zinc-binding protein [Bacteroides helcogenes P
           36-108]
          Length = 145

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 54/147 (36%), Gaps = 32/147 (21%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC--------- 52
              + D R++  A   S W          V  LIVKD ++I  G                
Sbjct: 8   KQEALDKRYIRMA---SIWAENSYCKRRQVGALIVKDKMIISDGYNGTPAGFENICEDEN 64

Query: 53  -------PHAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  A   +  +   + GAT YVT  PC        C++ II+ GI+RVV 
Sbjct: 65  NVTKPYVLHAEANAITKIARSNNSSNGATMYVTASPCIE------CSKLIIQAGIKRVVY 118

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRM 129
                       G++ L + GI V  +
Sbjct: 119 SEKYRL----EDGIELLKRAGIEVVFV 141


>gi|34419354|ref|NP_899367.1| dCMP deaminase [Vibrio phage KVP40]
 gi|34333035|gb|AAQ64190.1| dCMP deaminase [Vibrio phage KVP40]
          Length = 150

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 51/149 (34%), Gaps = 37/149 (24%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
             S +D  ++  A  F++     T     V  +IVK+  +I  G                
Sbjct: 5   NKSYYDLVYLDIAKSFAKKS---TCKQKQVGAVIVKNDRIISHGYNGTPSGMLHCKDTAD 61

Query: 54  ---------------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                          HAE  A+     AG    GAT YVT  PC +      CA+ I+  
Sbjct: 62  FGDLTHRQWSEIHEIHAEQNAICYAARAGISTEGATMYVTASPCHN------CAKLIVAA 115

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           GI+ ++V               WL  +G+
Sbjct: 116 GIKILIVGSIY--SGSQPDWWHWLRDRGV 142


>gi|298373394|ref|ZP_06983383.1| cytidine/deoxycytidylate deaminase family protein [Bacteroidetes
           oral taxon 274 str. F0058]
 gi|298274446|gb|EFI15998.1| cytidine/deoxycytidylate deaminase family protein [Bacteroidetes
           oral taxon 274 str. F0058]
          Length = 141

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 54/147 (36%), Gaps = 32/147 (21%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA------------- 48
             +  D R+M  A  ++     L      V  L+VKD ++I  G                
Sbjct: 6   KQTLLDERYMRMARIWAENSYCLRRK---VGALLVKDKMIISDGYNGTPSGFENCCEDEH 62

Query: 49  ---YGGCPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  A+     +   + GAT YVT  PC        CA+ II+ GIRRVV 
Sbjct: 63  NNSKPYVLHAEANAISKVARSNNSSDGATLYVTASPCME------CAKLIIQAGIRRVVY 116

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRM 129
             +         GL+ + +  I +   
Sbjct: 117 GEEYRIA----DGLELMRRADIEIVFC 139


>gi|288555665|ref|YP_003427600.1| DNA binding and uptake late competence protein [Bacillus
           pseudofirmus OF4]
 gi|288546825|gb|ADC50708.1| late competence operon required for DNA binding and uptake
           [Bacillus pseudofirmus OF4]
          Length = 189

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 58/162 (35%), Gaps = 34/162 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
           M   S+D  FM+ +   +            V   IV++  +I  G               
Sbjct: 1   MERISWDQYFMAQSHLLALRSACTRL---MVGATIVREKRIIAGGYNGSVSGSDHCIDQG 57

Query: 47  -----TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAEV AL +    G    GA  YVT  PC H      C + II+ GI+
Sbjct: 58  CYVVDHHCIRTIHAEVNALLQCAKFGVPTEGAELYVTHFPCVH------CTKSIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
           +V    D  +   +   ++   + G+ V +++     + +H 
Sbjct: 112 KVFYASDYKNHPYA---VELFKEAGVEVSQVVLENPVLDIHQ 150


>gi|38677840|emb|CAE82258.1| putative cytosine deaminase [Candida albicans]
          Length = 150

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 19/155 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           ++  D + +  AL  ++         P  +C+I  DG V+G+G            H E+ 
Sbjct: 1   MTFDDKKGLQIALDQAKKS-YSEGGIPIGSCIISSDGTVLGQGHNERIQKHSAILHGEMS 59

Query: 59  ALEEAGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           ALE AG       +  T Y TL PCS       C   I+  G +RVV+  +   +     
Sbjct: 60  ALENAGRLPGKTYKDCTIYTTLSPCSM------CTGAILLYGFKRVVMGENVNFLGNE-- 111

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
             + L + G+ V  + + E    +  ++  + +  
Sbjct: 112 --KLLIENGVEVVNLNDQECIDLMAKFIKEKPQDW 144


>gi|332883144|gb|EGK03427.1| hypothetical protein HMPREF9456_01494 [Dysgonomonas mossii DSM
           22836]
          Length = 149

 Score = 69.9 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 50/143 (34%), Gaps = 32/143 (22%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----------------Y 49
            D R+M  A   + W          V  LIVKD ++I  G                    
Sbjct: 9   LDERYMRMA---AIWAENSYCKRRKVGALIVKDKMIISDGYNGTPSGFENICEDENNETK 65

Query: 50  GGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               HAE  A+ +       + GAT YVT  PC        CA+ II+ GI RVV     
Sbjct: 66  AYVLHAEANAITKVACSHNSSLGATMYVTTSPCIE------CAKLIIQAGITRVVYNQKY 119

Query: 107 PDVRVSGRGLQWLSQKGIIVDRM 129
                +      L + G+ V  +
Sbjct: 120 RRTDGAS----LLERAGVEVVFI 138


>gi|224538415|ref|ZP_03678954.1| hypothetical protein BACCELL_03309 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519974|gb|EEF89079.1| hypothetical protein BACCELL_03309 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 153

 Score = 69.9 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 54/147 (36%), Gaps = 32/147 (21%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC--------- 52
              + D R++  A   S W          V  LIVKD ++I  G                
Sbjct: 8   KQEALDKRYIRMA---SIWAENSYCKRRQVGALIVKDKMIISDGYNGTPAGFENVCEDDN 64

Query: 53  -------PHAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  A   +  +   + GAT YVT  PC        C++ II+ GI+RVV 
Sbjct: 65  NVTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CSKLIIQAGIKRVVY 118

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRM 129
                       G++ L + GI V  +
Sbjct: 119 SEKYRL----EDGIELLKRAGIEVVYV 141


>gi|189467913|ref|ZP_03016698.1| hypothetical protein BACINT_04305 [Bacteroides intestinalis DSM
           17393]
 gi|189436177|gb|EDV05162.1| hypothetical protein BACINT_04305 [Bacteroides intestinalis DSM
           17393]
          Length = 156

 Score = 69.9 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 54/147 (36%), Gaps = 32/147 (21%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC--------- 52
              + D R++  A   S W          V  LIVKD ++I  G                
Sbjct: 8   KQEALDKRYIRMA---SIWAENSYCKRRQVGALIVKDKMIISDGYNGTPAGFENVCEDDN 64

Query: 53  -------PHAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  A   +  +   + GAT YVT  PC        C++ II+ GI+RVV 
Sbjct: 65  NVTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CSKLIIQAGIKRVVY 118

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRM 129
                       G++ L + GI V  +
Sbjct: 119 SEKYRL----EDGIELLKRAGIEVVYV 141


>gi|121604898|ref|YP_982227.1| CMP/dCMP deaminase [Polaromonas naphthalenivorans CJ2]
 gi|120593867|gb|ABM37306.1| CMP/dCMP deaminase, zinc-binding protein [Polaromonas
           naphthalenivorans CJ2]
          Length = 411

 Score = 69.9 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 17/125 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
           D  FM  AL  +R  V        V  ++V+ G VI  G      A+    HAE+ AL  
Sbjct: 3   DEAFMEMALVQAR--VAAAFGEVPVGAVVVRQGKVIATGRNAPVEAHDPTAHAEIMALRA 60

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A              +VTLEPC+       C+  ++   ++RVV    +P    +G  + 
Sbjct: 61  AALALGNYRLDECELFVTLEPCAM------CSGAMLNARLKRVVFGASEPKTGAAGSVIN 114

Query: 118 WLSQK 122
             +Q 
Sbjct: 115 LFAQA 119


>gi|325266384|ref|ZP_08133062.1| tRNA-specific adenosine deaminase [Kingella denitrificans ATCC
           33394]
 gi|324982177|gb|EGC17811.1| tRNA-specific adenosine deaminase [Kingella denitrificans ATCC
           33394]
          Length = 241

 Score = 69.9 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 20/128 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  ++V  G ++ +             HAE+ AL +AG+            YV+LEPC+
Sbjct: 115 PVGAVVVHRGNIVAQAYNRCVADCNVSHHAEILALAQAGQVLGSYRLNECDVYVSLEPCA 174

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGK 135
                  CA  +++  + RV+    +P    +G  +       L+    +   ++  E +
Sbjct: 175 M------CAGALMQARVARVIFAASEPKTGAAGSVVNLFANKALNAHTAVSGGVLADEAQ 228

Query: 136 IFLHAYLT 143
             L  +  
Sbjct: 229 AILQQFFQ 236


>gi|11499353|ref|NP_070592.1| dCMP deaminase, putative [Archaeoglobus fulgidus DSM 4304]
 gi|2648787|gb|AAB89487.1| dCMP deaminase, putative [Archaeoglobus fulgidus DSM 4304]
          Length = 157

 Score = 69.9 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 56/158 (35%), Gaps = 43/158 (27%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP------ 53
           M   + D  FM  A   ++    L      V  +IVKD  ++  G      G P      
Sbjct: 1   MKRPTLDEYFMEIASVVAKRSTCLRQ---HVGAVIVKDKRILATGYNGAPSGLPHCEEVG 57

Query: 54  --------------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE  A+ +A   G    G T Y T  PC        CA+
Sbjct: 58  CLRDRMSVPSGERQELCRGVHAEQNAIIQAAKFGISVDGGTLYSTHCPCI------TCAK 111

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
            II  GI+RVV   +  D      GL+ L + G+ ++ 
Sbjct: 112 IIINAGIKRVVYGKEYAD----KNGLKLLEEAGVEIEF 145


>gi|239945135|ref|ZP_04697072.1| hypothetical protein SrosN15_29385 [Streptomyces roseosporus NRRL
           15998]
 gi|239991596|ref|ZP_04712260.1| hypothetical protein SrosN1_30112 [Streptomyces roseosporus NRRL
           11379]
          Length = 256

 Score = 69.9 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 63/186 (33%), Gaps = 14/186 (7%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD------- 203
            +   +  + D         S PI+          LR  +D ++ G  TV  +       
Sbjct: 37  WLRANMVSTLDG-AAQHDGRSQPISCAADMRIFGTLRGLADVVIAGAETVRQEGYRPARA 95

Query: 204 -DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV-LALAFR 261
            +     R    Q  +P   ++     L     +  T  L P ++VT    P     A R
Sbjct: 96  REAFAARRAAAGQGPAPAVAVVTGSLDLDFSLPLF-TEPLVPTLVVTGAAAPADRIEAAR 154

Query: 262 KKNINIIYCD---CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
           K    ++        D  +++  L  RG+   L EGG  +   F+ +  +D + L  S +
Sbjct: 155 KAGAEVVIAGDGTRVDPARVVRELAARGLRRQLTEGGPRLLGQFVAAGALDELCLTLSPM 214

Query: 319 VIGEGG 324
           +     
Sbjct: 215 LTAGDA 220


>gi|220904518|ref|YP_002479830.1| CMP/dCMP deaminase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868817|gb|ACL49152.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 155

 Score = 69.9 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 17/104 (16%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
            RFM  A+  S+  +           +IV+DG +IG G            HAEV+A+  A
Sbjct: 4   RRFMERAIELSKQSMAAGGG--PFGAVIVRDGKIIGEGTNNVTPHNDPTAHAEVEAIRNA 61

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                     G+  + + EPC      P C   I    I ++  
Sbjct: 62  CRALETFDLSGSAIFTSCEPC------PMCLSAIWWARIGKIYF 99


>gi|218281132|ref|ZP_03487667.1| hypothetical protein EUBIFOR_00228 [Eubacterium biforme DSM 3989]
 gi|218217646|gb|EEC91184.1| hypothetical protein EUBIFOR_00228 [Eubacterium biforme DSM 3989]
          Length = 159

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 57/162 (35%), Gaps = 36/162 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-------------TAYG 50
           S+D  FM  A   S   +     N  V   IV     V+G G                  
Sbjct: 7   SWDQYFMGMA-HLS--AMRSKDPNTRVGACIVNPQKRVVGLGYNGFPYGCEDDEFPWERD 63

Query: 51  GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           G           HAE+ A+  + ++  G T YV+L PC+       CA+ II+ GI  VV
Sbjct: 64  GEFLDTKYPYVVHAELNAILNSIQDLHGCTLYVSLFPCNE------CAKAIIQAGITCVV 117

Query: 102 VCVDDPD-VRVSGRGLQWLSQKG---IIVDRMMESEGKIFLH 139
              D  D    +    +     G   I +   ME E +I   
Sbjct: 118 YESDKYDGTEGNIASKRMFHDAGVKLIQLPYDMEVETRINNR 159


>gi|330931309|ref|XP_003303355.1| hypothetical protein PTT_15525 [Pyrenophora teres f. teres 0-1]
 gi|311320718|gb|EFQ88558.1| hypothetical protein PTT_15525 [Pyrenophora teres f. teres 0-1]
          Length = 195

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 61/156 (39%), Gaps = 25/156 (16%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYG-GCPHAEVQ 58
           P  +   ++M  AL  ++      S N  V  L+V    G ++ RG T    G  HAE  
Sbjct: 28  PDPNDHLKYMRLALDQAQESPPKPS-NFRVGALLVDADTGDILSRGYTLECEGNTHAEQC 86

Query: 59  AL-----------EEAGEEARGAT-AYVTLEPCS-HYGRSPPCAQFII-------ECGIR 98
            L           E  GE     T  Y T+EPC+     + PCA  II       E  I+
Sbjct: 87  CLLKFAQAHDLPEERVGEALPPNTVIYTTMEPCNLRLSGNMPCADRIIRTKGKDGEQRIK 146

Query: 99  RVVVCVDDPDVRVSGRG-LQWLSQKGIIVDRMMESE 133
           +V + V +P+  V      + L + GI    +   E
Sbjct: 147 KVFLGVKEPEKFVGENEGRKKLEEHGIECVHVPGLE 182


>gi|228472860|ref|ZP_04057617.1| cytidine/deoxycytidylate deaminase family protein [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228275442|gb|EEK14219.1| cytidine/deoxycytidylate deaminase family protein [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 145

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 51/145 (35%), Gaps = 18/145 (12%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
           D  FM  AL+ ++  +        V  +I     +I +             HAE+QA+  
Sbjct: 5   DTYFMQKALQEAQ--IAFEQGEVPVGAVITIGERIIAKAHNLTEKLTDVTAHAEMQAITA 62

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A E   G      T YVTLEPC        CA  +    I +VV    D   R       
Sbjct: 63  ASEYLGGKYLMDCTLYVTLEPC------VMCAGALYWSQIGKVVYGATDSK-RGYHLFGN 115

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYL 142
            L  K  +V  ++E      +  + 
Sbjct: 116 LLHPKTQVVQGVLEEPCSQIVKDFF 140


>gi|146342901|ref|YP_001207949.1| putative cytidine and deoxycytidylate deaminase [Bradyrhizobium sp.
           ORS278]
 gi|146195707|emb|CAL79734.1| putative cytidine and deoxycytidylate deaminase [Bradyrhizobium sp.
           ORS278]
          Length = 148

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 52/147 (35%), Gaps = 22/147 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA-- 63
           FM  AL+ +       S    + C++V+DG VI        T      HAE+ AL +A  
Sbjct: 6   FMDLALKAAESAA--ISGEVPIGCVVVRDGTVIAAAANRTLTDRDPTAHAEILALRQAAQ 63

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-- 118
               E       YVTLEPC        CA  I    IRR+     D        G+++  
Sbjct: 64  AIGSERLIDCDLYVTLEPC------TMCAGAISFARIRRLYYGAADSKGGAVESGVRFFA 117

Query: 119 ---LSQKGIIVDRMMESEGKIFLHAYL 142
                    +   + E +    L  + 
Sbjct: 118 APTCHHAPEVYSAVGEQQSAQMLREFF 144


>gi|86140853|ref|ZP_01059412.1| putative deoxycytidylate deaminase [Leeuwenhoekiella blandensis
           MED217]
 gi|85832795|gb|EAQ51244.1| putative deoxycytidylate deaminase [Leeuwenhoekiella blandensis
           MED217]
          Length = 146

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 59/146 (40%), Gaps = 38/146 (26%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
           +D  ++  A  +++           V  LIVKD ++I  G     G P            
Sbjct: 12  YDIAYLRMAREWAKLSYCQRK---QVGALIVKDKMIISDGY---NGTPTGFENICEDEEG 65

Query: 54  -------HAEVQALEEAGEEAR---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A+ +     +   GAT Y+TL PC+       C++ I + GI+RVV  
Sbjct: 66  YTKWYVLHAEANAILKVAASTQSCVGATLYITLSPCTE------CSKLIHQAGIKRVVFN 119

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRM 129
               D      G+ +L + G+ VD +
Sbjct: 120 KAYKDP----SGIDFLRRAGVSVDCI 141


>gi|304413544|ref|ZP_07395017.1| CMP/dCMP deaminase [Candidatus Regiella insecticola LSR1]
 gi|304284387|gb|EFL92780.1| CMP/dCMP deaminase [Candidatus Regiella insecticola LSR1]
          Length = 181

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 15/88 (17%)

Query: 30  SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
            V  ++V    +IG G       +    HAE+ AL +AG++ +      AT YVTLEPC 
Sbjct: 49  PVGAVLVLQNKIIGEGWNQPIIHHDPSAHAEIMALRQAGQQQKNYRLPDATLYVTLEPC- 107

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                  CA  +I   I R+V   +D  
Sbjct: 108 -----VMCAGAMIHSRISRLVYGANDNK 130


>gi|224013458|ref|XP_002296393.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968745|gb|EED87089.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 543

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 55/145 (37%), Gaps = 19/145 (13%)

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSV---------PITGFISKNQVHLLRAQSDAI 193
            R   +R  ITL  A + D MI                  ++   S    H LR   DAI
Sbjct: 127 PRVARRRPFITLAYAQTLDGMIAAKTSNDKSKATTTSNMRLSSPQSTVLTHQLRNMHDAI 186

Query: 194 LVGIGTVLADDPELTCRLNGLQEH------SPMRIILDPHFKLSLDSKIIKTALLAPVII 247
           LVG  T L D P L  RL             P+ ++LD H       +++   +L P  +
Sbjct: 187 LVGGSTFLVDAPRLNVRLQPDTNKMDSMTQQPIPVVLDTHLN--ALQQVLWGEVLPP--L 242

Query: 248 VTENDDPVLALAFRKKNINIIYCDC 272
             ++DD    +  ++  ++ I  + 
Sbjct: 243 AADHDDEEELVLPQEMQVDNIRANN 267



 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 15/72 (20%)

Query: 270 CDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINS-------------RLVDSIILYR 315
            +  DL+ +++ L     V S++VEGGA +  SF+N               LVD + +  
Sbjct: 354 TNSLDLRHVMSQLYNHFEVDSVMVEGGAQILSSFMNECVKKSNGKSGSKSSLVDCLCVTI 413

Query: 316 SQIVIGEG-GIP 326
           S +++G   G+P
Sbjct: 414 SPVIMGGKWGLP 425


>gi|218440469|ref|YP_002378798.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 7424]
 gi|218173197|gb|ACK71930.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 7424]
          Length = 162

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 18/121 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEE 62
            R+MS A+  ++      + +  V  +I+ + G +I  G            HAE+  L  
Sbjct: 17  KRWMSRAITLAQEAAQ--AGDVPVGAVIIDEKGKLIAEGSNRKERDQDPTAHAEIIVLRR 74

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +       +    YVTLEPC      P C   II+  I  ++  VDDP          
Sbjct: 75  ASQVLQTWHLQQCKLYVTLEPC------PMCTGAIIQARIALLIYGVDDPKTGTIRTVAN 128

Query: 118 W 118
            
Sbjct: 129 L 129


>gi|298675909|ref|YP_003727659.1| CMP/dCMP deaminase zinc-binding protein [Methanohalobium
           evestigatum Z-7303]
 gi|298288897|gb|ADI74863.1| CMP/dCMP deaminase zinc-binding protein [Methanohalobium
           evestigatum Z-7303]
          Length = 155

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 54/158 (34%), Gaps = 43/158 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S D  F+  A   ++    L +    V  +IV+D  +I  G                   
Sbjct: 9   SIDEYFLEIASVVAKRATCLRNK---VGAVIVRDKRIISTGYNGAPSNLEHCLDIGCIRQ 65

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G     AT Y T +PC        CA+ II 
Sbjct: 66  QYNIESGTQHEKCRAVHAEQNAIIQAALHGVSTDNATIYCTHQPCI------LCAKMIIN 119

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
             I++V+   D PD       L++LS  GI      + 
Sbjct: 120 ANIKKVIYFSDYPD----DEALKFLSDAGIETINFSQE 153


>gi|163753563|ref|ZP_02160686.1| deoxycytidylate deaminase [Kordia algicida OT-1]
 gi|161325777|gb|EDP97103.1| deoxycytidylate deaminase [Kordia algicida OT-1]
          Length = 144

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 59/154 (38%), Gaps = 41/154 (26%)

Query: 1   MP---VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---- 53
           MP    + +D  ++  A     W          V  +IVKD ++I  G     G P    
Sbjct: 1   MPKQKQAKYDHAYLRMAKE---WGKLSYCKRKQVGAIIVKDRMIISDGY---NGTPSGFE 54

Query: 54  ---------------HAEVQALEEAGEEAR---GATAYVTLEPCSHYGRSPPCAQFIIEC 95
                          HAE  A+ +     +   GAT Y+T+ PC        C++ I + 
Sbjct: 55  NFCEDEEGYTKWYVLHAEANAILKVAASTQSCVGATLYITMSPCKE------CSKLIHQA 108

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           GI RVV      D      G+Q+L + G+ V+ +
Sbjct: 109 GITRVVY----VDAYKDDSGIQFLQRAGVEVEHI 138


>gi|46370356|gb|AAS89964.1| deaminase [Agrobacterium vitis]
          Length = 149

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 59/156 (37%), Gaps = 25/156 (16%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
           M +++   RFM  AL  +R   G     P +  ++VKDG+++ +             HAE
Sbjct: 1   MTLTT---RFMDVALEEARLA-GARGEVP-IGAVLVKDGVILAQAGNETRALQDVTAHAE 55

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+  A      E   GA  YVTLEPC        CA  I    IRR+     D     
Sbjct: 56  ILAIRRACTILEDERLAGADLYVTLEPC------TMCAAAISFARIRRLYYGAPDEKGGG 109

Query: 112 SGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
              G ++           +   + E+E    L  + 
Sbjct: 110 VDHGARFYSQPTCHHAPDVYAGIGETEAAALLKDFF 145


>gi|325295641|ref|YP_004282155.1| CMP/dCMP deaminase zinc-binding protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325066089|gb|ADY74096.1| CMP/dCMP deaminase zinc-binding protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 155

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 48/127 (37%), Gaps = 17/127 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
             D  F+  AL+ ++    L      +  +IVKD  +I R             HAE+ A+
Sbjct: 2   ELDHLFLLEALKEAKKAFKL--GEVPIGAIIVKDRKIISRAFNRKEFLQDPTAHAELLAI 59

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +EA  +       G T Y T+EPC        C   II+  I R+V  V DP        
Sbjct: 60  KEASRKLNSWRLNGCTLYSTVEPCIM------CCGVIIQSRIDRLVYSVPDPKFGGIESL 113

Query: 116 LQWLSQK 122
                 K
Sbjct: 114 YTIFKDK 120


>gi|327403586|ref|YP_004344424.1| CMP/dCMP deaminase zinc-binding protein [Fluviicola taffensis DSM
           16823]
 gi|327319094|gb|AEA43586.1| CMP/dCMP deaminase zinc-binding protein [Fluviicola taffensis DSM
           16823]
          Length = 150

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 30/141 (21%)

Query: 9   RFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC--------------- 52
           R+  A LR ++ W          V  LIV+DG +I  G                      
Sbjct: 16  RYDKAYLRMAQTWAELSHCERKKVGALIVRDGRIISDGYNGTPAGFENCCEDQNGNTQWY 75

Query: 53  -PHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
             HAE  A+     +  +  GAT ++TL PC        C++ +++ GI+RVV  ++  D
Sbjct: 76  VLHAEANAILKVARSTNDCSGATLFITLSPC------KDCSKLVLQAGIKRVVYMMEYKD 129

Query: 109 VRVSGRGLQWLSQKGIIVDRM 129
                 G+ +L   G+ V  +
Sbjct: 130 T----TGVDFLKSAGVEVVHI 146


>gi|15836532|ref|NP_301056.1| cytosine deaminase [Chlamydophila pneumoniae J138]
 gi|33242370|ref|NP_877311.1| putative cytosine deaminase [Chlamydophila pneumoniae TW-183]
 gi|8979374|dbj|BAA99208.1| cytosine deaminase [Chlamydophila pneumoniae J138]
 gi|33236881|gb|AAP98968.1| putative cytosine deaminase [Chlamydophila pneumoniae TW-183]
          Length = 148

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 48/141 (34%), Gaps = 21/141 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEE 66
           M  A + +R           V C+IVKD  +I R   +         HAE+  +  A ++
Sbjct: 1   MQQAFKEARKA--YDQDEVPVGCVIVKDDKIIARAHNSVEKLKDATAHAEILCIGSAAQD 58

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                      Y TLEPC        CA  I    I R+V    D  +   G  +   ++
Sbjct: 59  LDNWRLLDTVLYCTLEPCLM------CAGAIQLARIPRIVWAAPDVRLGAGGSWVNIFTE 112

Query: 122 ----KGIIVDRMMESEGKIFL 138
                 +     + SE    L
Sbjct: 113 EHPFHTVSCTGGVCSEEAEHL 133


>gi|332705458|ref|ZP_08425536.1| cytosine/adenosine deaminase [Lyngbya majuscula 3L]
 gi|332355818|gb|EGJ35280.1| cytosine/adenosine deaminase [Lyngbya majuscula 3L]
          Length = 147

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 20/147 (13%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQALEEAGEE 66
           M AA + ++  +G       +  ++VK G ++GRG       G    H E+ ALE+ G +
Sbjct: 1   MLAAFKEAQ--MGFQEGGIPIGSVVVKGGEIVGRGHNRRVQKGSAILHGEMDALEDVGSQ 58

Query: 67  A----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                +    Y TL PCS       C   I+   I  VV+  +   +       + L  +
Sbjct: 59  PASFYQDVVLYTTLSPCSM------CTGAILLYKIPHVVIGENKTFLGEE----ELLRSR 108

Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKR 149
           G+IV+ + +      +  ++    +  
Sbjct: 109 GVIVEVLNDDSCYQLMQDFILNNSKLW 135


>gi|29349668|ref|NP_813171.1| deoxycytidylate deaminase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253569961|ref|ZP_04847370.1| deoxycytidylate deaminase [Bacteroides sp. 1_1_6]
 gi|298383932|ref|ZP_06993493.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
           1_1_14]
 gi|29341578|gb|AAO79365.1| deoxycytidylate deaminase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251840342|gb|EES68424.1| deoxycytidylate deaminase [Bacteroides sp. 1_1_6]
 gi|298263536|gb|EFI06399.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
           1_1_14]
          Length = 149

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 56/157 (35%), Gaps = 38/157 (24%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
             D R++  A  ++            V  LIVKD ++I  G     G P           
Sbjct: 9   ELDKRYIRMASIWAENSYCQRRK---VGALIVKDKMIISDGY---NGTPSGFENVCEDEN 62

Query: 54  --------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  A   +  +   + GAT YVT  PC        CA+ II+ GI+RVV 
Sbjct: 63  NLTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CAKLIIQAGIKRVVY 116

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
                       G++ L + GI V     +E      
Sbjct: 117 SEHYRL----EDGIELLKRAGIEVIYTEMNEDSSPNK 149


>gi|317968054|ref|ZP_07969444.1| pyrimidine reductase, riboflavin biosynthesis [Synechococcus sp.
           CB0205]
          Length = 210

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 71/219 (32%), Gaps = 19/219 (8%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
                + L +A+S D  +  A  G+  + G   +  +    A +DA LVG  T+      
Sbjct: 1   MPAPELRLVLAISLDGRLAPAAGGAAQLGGAGDRRVLEEALAWADAALVGGRTIRQHGCT 60

Query: 207 LTCRLNGLQEHSPM--------RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
              R   L E             +++        D ++ +   L   ++      P    
Sbjct: 61  CLIRDADLLEQRQQQGRPPQPAVLVVSRQLSWDPDLRLFQQP-LQRWLLGPGEAAP---- 115

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
                +        ++    L  L   G+  LLV GGA +A   +   LVD + L     
Sbjct: 116 -----SGFDRSLPLQNWPATLAALAAVGLERLLVLGGAELATQLLAEGLVDELQLTLVPQ 170

Query: 319 VIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIG 356
           ++G        +       +  + +   G D + + Y  
Sbjct: 171 LLGGPHGWVQSDGALEASAWTLLEQRCLGGDELLVRYRR 209


>gi|294790273|ref|ZP_06755431.1| tRNA-specific adenosine deaminase [Scardovia inopinata F0304]
 gi|294458170|gb|EFG26523.1| tRNA-specific adenosine deaminase [Scardovia inopinata F0304]
          Length = 185

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 18/128 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCP----HAEVQ 58
           S  D + M+ AL+ +       + +  V  +++ + G +I +G            HAE++
Sbjct: 32  SLSDEQAMALALKNAVRAAQ--AGDVPVGAVLLDNRGRLISQGYNQRQARADPLSHAEIE 89

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL  AG+        G +  VT+EPC      P CA   +   + R+V    DP +   G
Sbjct: 90  ALRAAGQVKGDWNLAGCSLIVTMEPC------PMCAGAAVSVHLGRIVFGTWDPKMGACG 143

Query: 114 RGLQWLSQ 121
                   
Sbjct: 144 SVWDIPRD 151


>gi|239930296|ref|ZP_04687249.1| cytidine/deoxycytidine deaminase [Streptomyces ghanaensis ATCC
           14672]
 gi|291438644|ref|ZP_06578034.1| cytidine/deoxycytidine deaminase [Streptomyces ghanaensis ATCC
           14672]
 gi|291341539|gb|EFE68495.1| cytidine/deoxycytidine deaminase [Streptomyces ghanaensis ATCC
           14672]
          Length = 161

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 55/148 (37%), Gaps = 24/148 (16%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGI-VIGRGVTAY--GGCP--HAEVQALEEAG 64
           M  AL  +   V     +  V  +++  DG  V+ RG       G P  HAEV A+  A 
Sbjct: 19  MRLALDEAERAV--RGGDVPVGAVVLAPDGTTVLARGHNEREAAGDPTAHAEVLAVRRAA 76

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                    G T  VTLEPC        CA  I +  + RVV    D     +G     L
Sbjct: 77  AELGQWRLAGCTLVVTLEPC------TMCAGAIQQARVDRVVYGARDEKAGAAGSLWDLL 130

Query: 120 SQKGI-----IVDRMMESEGKIFLHAYL 142
             + +     +V+ ++  E    L  + 
Sbjct: 131 RDRRLNHRPEVVEGVLAEECARLLTEFF 158


>gi|325106234|ref|YP_004275888.1| CMP/dCMP deaminase zinc-binding protein [Pedobacter saltans DSM
           12145]
 gi|324975082|gb|ADY54066.1| CMP/dCMP deaminase zinc-binding protein [Pedobacter saltans DSM
           12145]
          Length = 157

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 51/147 (34%), Gaps = 17/147 (11%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
           + D  FM  A + +            +  +IV +G V+GRG            HAE+QA 
Sbjct: 13  AADEFFMKEAYKEALLA--FDKDEVPIGAIIVANGKVVGRGHNLTERLNDVTAHAEMQAF 70

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A            T YVT+EPC     +    Q      I R+V    D     S   
Sbjct: 71  TSASNTIGAKYLHNCTLYVTVEPCVMCAGASYWTQ------ISRIVFGALDEKRGYSRLN 124

Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYL 142
            Q +  K  IV  +M  E    +  + 
Sbjct: 125 PQIIHPKTEIVGGVMSEECAALMRNFF 151


>gi|241763322|ref|ZP_04761378.1| bifunctional deaminase-reductase domain protein [Acidovorax
           delafieldii 2AN]
 gi|241367474|gb|EER61773.1| bifunctional deaminase-reductase domain protein [Acidovorax
           delafieldii 2AN]
          Length = 245

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 74/192 (38%), Gaps = 25/192 (13%)

Query: 187 RAQSDAILVGIGTV-------LADDPEL---TCRLNGLQEHSPMR--IILDPHFKLSLDS 234
           R  + A ++G  TV         D   L   T     L + +  R  ++LDP  ++  +S
Sbjct: 44  RLDAQAWMLGRNTVQIHHAPQRFDHEGLARATRYEPFLGQRTTRRSLVVLDPKGRIRYES 103

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVG-RGVTSLL 291
             I+   +  + +++E          R+  I+ ++   D  DL   +  L    G+  +L
Sbjct: 104 GQIEGDDV--ISVLSEQVPEAYLAHLRELGISYLFAGRDGHDLALAMQTLGTTFGMRRVL 161

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-------NFMCVRRD 344
           +EGG  V  +F+ + L+D + L     + G  GI +  E     +              +
Sbjct: 162 LEGGGVVNGAFLKAGLIDEVSLMLYPGIDGLSGIHTVFECQGPAELLPSAGATLELTHLE 221

Query: 345 YFGSD-VCLEYI 355
               D V L Y+
Sbjct: 222 RLPDDIVWLRYL 233


>gi|17232364|ref|NP_488912.1| hypothetical protein all4872 [Nostoc sp. PCC 7120]
 gi|17134009|dbj|BAB76571.1| all4872 [Nostoc sp. PCC 7120]
          Length = 147

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 43/118 (36%), Gaps = 18/118 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           MS AL  +    G     P V  +I    G +I  G            HAE+ AL  A +
Sbjct: 1   MSHALELA-KVAGEAGEIP-VGAVITDASGHLIAEGENRKERDQDPTAHAEIVALRAATK 58

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                     T YVTLEPC      P CA  II   + ++V  VDD         L  
Sbjct: 59  ILQTWRLHECTLYVTLEPC------PMCAGAIIHSRLGKLVYGVDDTKTGAIRTVLNI 110


>gi|254567633|ref|XP_002490927.1| Cytosine deaminase, zinc metalloenzyme that catalyzes the
           hydrolytic deamination of cytosine to urac [Pichia
           pastoris GS115]
 gi|238030724|emb|CAY68647.1| Cytosine deaminase, zinc metalloenzyme that catalyzes the
           hydrolytic deamination of cytosine to urac [Pichia
           pastoris GS115]
 gi|328352537|emb|CCA38936.1| cytosine deaminase [Pichia pastoris CBS 7435]
          Length = 150

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 61/157 (38%), Gaps = 21/157 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAE 56
           M  S  D   +  AL+ ++         P  A L+ +DG V+G G       G    HAE
Sbjct: 1   MTFSDEDG--IKLALKEAQKG-YEDGGIPIGAALVSEDGTVLGVGHNLRIQKGSSVFHAE 57

Query: 57  VQALEEAGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           + ALE AG       +  T Y TL PC        C+   +  GI+RVV+  ++      
Sbjct: 58  MSALENAGRLPGKTYKNCTMYTTLSPCHM------CSGACLMYGIKRVVLGENETFQGAE 111

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
               + L  KG+ V      E K  +  ++  +    
Sbjct: 112 ----ELLRSKGVEVVNAKNDECKELISKFIKERPADW 144


>gi|88604201|ref|YP_504379.1| CMP/dCMP deaminase, zinc-binding [Methanospirillum hungatei JF-1]
 gi|88189663|gb|ABD42660.1| CMP/dCMP deaminase, zinc-binding protein [Methanospirillum hungatei
           JF-1]
          Length = 274

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 62/150 (41%), Gaps = 18/150 (12%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
            D  FM AA++ +    G       +  ++V+DG++IGRG            HAE+  L+
Sbjct: 130 LDDPFMEAAIQEAEK--GKEEGGIPIGSVLVRDGVIIGRGHNRRVQNNDPMVHAEIDCLQ 187

Query: 62  EAG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
            AG     +    Y TL PC        CA  +++  I RV+V     + R      +++
Sbjct: 188 NAGRIGSYQDCILYSTLMPCF------LCAGAVVQFHIPRVIVG----ESRTFSGAREFM 237

Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
              G+ V     +  ++ +  ++  + E  
Sbjct: 238 EAHGVTVIDYDLNRCQMMMETFIREKPELW 267


>gi|70726327|ref|YP_253241.1| late competence operon required for DNA binding and uptake
           [Staphylococcus haemolyticus JCSC1435]
 gi|68447051|dbj|BAE04635.1| late competence operon required for DNA binding and uptake
           [Staphylococcus haemolyticus JCSC1435]
          Length = 152

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 54/148 (36%), Gaps = 34/148 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M    +D  FM+ +   +           SV   IVKD  +I  G               
Sbjct: 1   MERLKWDEYFMAQSHLLALRSTCQRL---SVGATIVKDNRIIAGGYNGSVAGEVHCIDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G    GAT YVT  PC +      C + II+ GI+
Sbjct: 58  CLIEDGHCIRTIHAEMNALLQCAKQGVSTDGATIYVTHFPCLN------CTKSIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           ++    D  + + +   L+ L Q GI  
Sbjct: 112 QIYYAEDYHNHKYA---LELLDQAGIDY 136


>gi|160871633|ref|ZP_02061765.1| tRNA-specific adenosine deaminase [Rickettsiella grylli]
 gi|159120432|gb|EDP45770.1| tRNA-specific adenosine deaminase [Rickettsiella grylli]
          Length = 160

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 62/161 (38%), Gaps = 24/161 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
           VS  D  +M  AL  +  H   +   P +  ++V +  VI        T      HAE+ 
Sbjct: 8   VSQRDTAYMQLALNQAA-HAKRSHEVP-IGAILVWNDHVIATAYNQTLTRCDPTAHAEIV 65

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            L+E  ++ +      AT YVTLEPC        C   +I+  I+R+V      D R+  
Sbjct: 66  VLQETAKQLKNHRLLDATLYVTLEPCLM------CVGAMIQARIKRLVFGA--YDARLGT 117

Query: 114 RGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKR 149
              Q    KG+     + + ++       L  +   +  + 
Sbjct: 118 IMHQLHRLKGLNHSFEVAEGVLSEACSKELKQFFKYKRCRH 158


>gi|163786614|ref|ZP_02181062.1| putative cytosine/adenosine deaminase [Flavobacteriales bacterium
           ALC-1]
 gi|159878474|gb|EDP72530.1| putative cytosine/adenosine deaminase [Flavobacteriales bacterium
           ALC-1]
          Length = 149

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 53/150 (35%), Gaps = 17/150 (11%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
            D  FM  AL+ +   V        V  +IV    +I R             HAE+QA+ 
Sbjct: 6   DDTYFMRKALQEAE--VAFEKGEIPVGAIIVVKDRIIARTHNLTELLNDVTAHAEMQAIT 63

Query: 62  EAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A     G      T YVTLEPC        CA  +    I ++V    D        G 
Sbjct: 64  SAANFLGGKYLIDCTLYVTLEPCQM------CAGALYWSQISKIVYGASDEQRGFETMGT 117

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQV 146
           +   +  ++   + E   ++    ++ ++ 
Sbjct: 118 KLHPKTKVVSGILAEEASELMKRFFIEKRN 147


>gi|239833547|ref|ZP_04681875.1| CMP/dCMP deaminase zinc-binding [Ochrobactrum intermedium LMG 3301]
 gi|239821610|gb|EEQ93179.1| CMP/dCMP deaminase zinc-binding [Ochrobactrum intermedium LMG 3301]
          Length = 173

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/107 (33%), Positives = 44/107 (41%), Gaps = 17/107 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEE 66
           M  AL  +R   G     P +  +IV  G +I R             HAEV A+ EAGE 
Sbjct: 32  MEIALEEAR-AAGARGEVP-IGAVIVHQGTIIARAGNRTRELNDVTAHAEVLAIREAGET 89

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            +     G   YVTLEPC+       CA  I    IRR+     DP 
Sbjct: 90  LQSERLVGCDLYVTLEPCAM------CAAAISFARIRRLYYGATDPK 130


>gi|307152204|ref|YP_003887588.1| CMP/dCMP deaminase zinc-binding protein [Cyanothece sp. PCC 7822]
 gi|306982432|gb|ADN14313.1| CMP/dCMP deaminase zinc-binding protein [Cyanothece sp. PCC 7822]
          Length = 162

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 45/121 (37%), Gaps = 18/121 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEE 62
            ++MS A+  ++      + +  V  +I+ ++G +I               HAE+  L  
Sbjct: 17  QQWMSRAIVLAQQAAL--AGDVPVGAVILDREGRLIAEASNRKERDQDPTAHAEILVLRR 74

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +            YVTLEPC      P C   II+  I  +V  VDDP          
Sbjct: 75  ASQILKTWHLEACYLYVTLEPC------PMCTGAIIQARIGLLVYGVDDPKTGTIRTVAN 128

Query: 118 W 118
            
Sbjct: 129 L 129


>gi|194033488|ref|XP_001924271.1| PREDICTED: tRNA-specific adenosine deaminase 2 isoform 1 [Sus
           scrofa]
          Length = 191

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 23/126 (18%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
            ++M  A++ ++  +  T     V CL+V +  V+G+G            HAE+ A+++ 
Sbjct: 23  EKWMEQAMQMAKEALENTEV--PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQV 80

Query: 64  GEEA-RGA----------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            +   RG             YVT+EPC        CA  +    I  VV    +      
Sbjct: 81  LDWCHRGGKSPSEVFERTVLYVTVEPCIM------CAAALRLMKIPLVVYGCQNERFGGC 134

Query: 113 GRGLQW 118
           G  L  
Sbjct: 135 GSVLDI 140


>gi|27382607|ref|NP_774136.1| nitrogen fixation protein [Bradyrhizobium japonicum USDA 110]
 gi|27355779|dbj|BAC52761.1| nitrogen fixation protein [Bradyrhizobium japonicum USDA 110]
          Length = 152

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 55/147 (37%), Gaps = 22/147 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA-- 63
           FM  AL+ +    G     P + C++V++  VI        T Y    HAE+ AL EA  
Sbjct: 10  FMDLALKTAENA-GKAGEVP-IGCVVVRNYEVIATAANRTLTDYDPTAHAEIVALREAAK 67

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-- 118
               E       YVTLEPC        CA  I    +RR+     DP       G+++  
Sbjct: 68  KIGSERLVDCDLYVTLEPC------TMCAGAISFARVRRLYYGAADPKGGAVESGVRFFA 121

Query: 119 ---LSQKGIIVDRMMESEGKIFLHAYL 142
                    +   + ESE    L  + 
Sbjct: 122 SPTCHHAPDVYSGVGESEAARLLKEFF 148


>gi|75908361|ref|YP_322657.1| tRNA-adenosine deaminase [Anabaena variabilis ATCC 29413]
 gi|75702086|gb|ABA21762.1| tRNA-adenosine deaminase [Anabaena variabilis ATCC 29413]
          Length = 147

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 43/118 (36%), Gaps = 18/118 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           MS AL  +    G     P V  +I    G +I  G            HAE+ AL  A  
Sbjct: 1   MSHALELA-KVAGDAGEIP-VGAVITDASGNLIAEGENRKERDQDPTAHAEIVALRAATR 58

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                     T YVTLEPC      P CA  II+  + ++V  VDD         L  
Sbjct: 59  ILQTWRLHECTLYVTLEPC------PMCAGAIIQARLGKLVYGVDDTKTGAIRTVLNI 110


>gi|329961864|ref|ZP_08299878.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides fluxus YIT 12057]
 gi|328531304|gb|EGF58148.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides fluxus YIT 12057]
          Length = 144

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 54/146 (36%), Gaps = 17/146 (11%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
            D+ +M  AL  ++   G     P V  ++V    +I R      T      HAE+QA+ 
Sbjct: 2   DDSYYMKQALLEAQKA-GERGEVP-VGAVVVCKDRIIARAHNLTETLTDVTAHAEMQAIT 59

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A     G+       YVT+EPC        CA  I      ++V   +D          
Sbjct: 60  AAASTLGGKYLNECALYVTVEPC------VMCAGAIAWAQTGKLVFGAEDEKRGYQRYAP 113

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYL 142
           Q L  K ++V  ++  E    +  + 
Sbjct: 114 QALHPKTMVVKGVLADECAALMKNFF 139


>gi|77736501|ref|NP_001029952.1| tRNA-specific adenosine deaminase 2 [Bos taurus]
 gi|75057795|sp|Q5E9J7|ADAT2_BOVIN RecName: Full=tRNA-specific adenosine deaminase 2; AltName:
           Full=Deaminase domain-containing protein 1; AltName:
           Full=tRNA-specific adenosine-34 deaminase subunit ADAT2
 gi|59858211|gb|AAX08940.1| deaminase domain containing 1 [Bos taurus]
 gi|296483948|gb|DAA26063.1| tRNA-specific adenosine deaminase 2 [Bos taurus]
          Length = 191

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 23/126 (18%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
            ++M  A++ ++  +  T     V CL+V +  V+G+G            HAE+ A+++A
Sbjct: 23  EKWMEQAMQMAKDALDNTEV--PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQA 80

Query: 64  GEEAR-----------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            +  R               YVT+EPC        CA  +    I  VV    +      
Sbjct: 81  LDWCRRRGRSPSEVFEHTVLYVTVEPCIM------CAAALRLMRIPLVVYGCQNERFGGC 134

Query: 113 GRGLQW 118
           G  L  
Sbjct: 135 GSVLDI 140


>gi|167765018|ref|ZP_02437139.1| hypothetical protein BACSTE_03412 [Bacteroides stercoris ATCC
           43183]
 gi|167697687|gb|EDS14266.1| hypothetical protein BACSTE_03412 [Bacteroides stercoris ATCC
           43183]
          Length = 144

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 17/145 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  +M  AL  ++   G     P V  ++V    +I R      T      HAE+QA+  
Sbjct: 3   DTDYMKQALLEAQKA-GERGEVP-VGAVVVCKDRIIARAHNLTETLTDVTAHAEMQAITA 60

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G+     T YVT+EPC        CA  I    + R+V   +D          +
Sbjct: 61  AAATLGGKYLNECTLYVTVEPC------VMCAGAIAWAQMGRLVFGAEDEKRGYQRYAPK 114

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYL 142
            L  K  +V  ++  E    +  + 
Sbjct: 115 ALHPKTAVVKGVLADECAALMKDFF 139


>gi|320107549|ref|YP_004183139.1| bifunctional deaminase-reductase domain-containing protein
           [Terriglobus saanensis SP1PR4]
 gi|319926070|gb|ADV83145.1| bifunctional deaminase-reductase domain protein [Terriglobus
           saanensis SP1PR4]
          Length = 226

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 10/139 (7%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLL 279
           I +D    L  DS  +    L  + +V+E          R + I+ I       DL+K +
Sbjct: 84  IAIDTQGSLLWDSGDLDGEHL--ISVVSEQAQTEYLAYLRDRQISYIVAGQSAVDLEKAV 141

Query: 280 TILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-----EGY 333
             L     + +LL+EGG  +  +F+ ++L+D + L  +  + G   +PS  +     EG+
Sbjct: 142 DALADNFEIKTLLLEGGGHINGAFLEAKLLDEVSLLLAPGIDGRHDVPSVFDGLKGSEGH 201

Query: 334 LEKNFMCVRRDYFGSDVCL 352
           L  +      +  G  V  
Sbjct: 202 LATSLKLNSVEKLGDGVLW 220


>gi|222110787|ref|YP_002553051.1| cmp/dcmp deaminase zinc-binding [Acidovorax ebreus TPSY]
 gi|221730231|gb|ACM33051.1| CMP/dCMP deaminase zinc-binding [Acidovorax ebreus TPSY]
          Length = 361

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 66/188 (35%), Gaps = 22/188 (11%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
           S DA +M      ++ H    +    V  ++V+DG VI  G  A         HAE+ AL
Sbjct: 4   SDDAHWMRE--AIAQAHAAQQAGEVPVGAVLVRDGQVIATGRNAPIAGHDPTAHAEMAAL 61

Query: 61  EE-----AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
                  +     G T YVTLEPC+       C+  ++   + RVV    D     +G  
Sbjct: 62  RAGAAQLSNYRLDGCTLYVTLEPCAM------CSGAMLHARLPRVVYGAADAKTGAAGSV 115

Query: 116 LQW-----LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG 170
           +       L+ +  +   ++  E    L  +   +   +    L     + + +      
Sbjct: 116 VNLFAEPRLNHQTAVQGGVLADECGALLSDFFRDRRRAQRAQQLAAHPLRQDALRTPDAA 175

Query: 171 SVPITGFI 178
              + G  
Sbjct: 176 FAHLDGPA 183


>gi|73668393|ref|YP_304408.1| dCMP deaminase [Methanosarcina barkeri str. Fusaro]
 gi|72395555|gb|AAZ69828.1| dCMP deaminase [Methanosarcina barkeri str. Fusaro]
          Length = 159

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 52/155 (33%), Gaps = 43/155 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
           S D  F+  A    +    L     +V  +IVKD  ++  G                   
Sbjct: 6   SLDEYFLEIAFVVGKRATCLRK---NVGAVIVKDKRILSTGYNGAPSGMDHCLEIGCIRD 62

Query: 48  ----------AYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G    GAT Y T +PC        CA+ +I 
Sbjct: 63  LEKIPSGTRQEKCRAVHAEQNAIIQAAIHGVSIAGATIYCTHQPCI------LCAKMLIN 116

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
             I+RVV     PD       L++    G+  + +
Sbjct: 117 SNIKRVVYANLYPD----NDSLEFFRDAGVEAEYI 147


>gi|147919375|ref|YP_686889.1| putative cytosine deaminase [uncultured methanogenic archaeon RC-I]
 gi|110622285|emb|CAJ37563.1| putative cytosine deaminase [uncultured methanogenic archaeon RC-I]
          Length = 144

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 18/146 (12%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAG- 64
           FM AA+  ++   GL      +  ++V +  ++G G       G P  HAE+  L  AG 
Sbjct: 4   FMQAAIDEAKK--GLAEGGIPIGSVMVINRRIVGSGHNKRVQDGDPVMHAEIDCLRSAGR 61

Query: 65  -EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
               + A  Y TL PC        CA  +++ GI++V+V     + +       ++   G
Sbjct: 62  VGRYKDAVLYSTLMPCY------LCAGAVVQFGIKKVIVG----ESKNFEGARAFMEAHG 111

Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKR 149
           + V  +   E K  +  ++ +     
Sbjct: 112 VEVVDLDLPECKDMMAEFIQKNPALW 137


>gi|87301779|ref|ZP_01084613.1| RibD/ribG C-terminal domain protein [Synechococcus sp. WH 5701]
 gi|87283347|gb|EAQ75302.1| RibD/ribG C-terminal domain protein [Synechococcus sp. WH 5701]
          Length = 219

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 78/219 (35%), Gaps = 21/219 (9%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV------ 200
                + L +A+S D  +  A  G+  + G   +  +    A +D  LVG  TV      
Sbjct: 1   MSLPQLRLVLAISLDGRLAPAHGGAAQLGGVGDRTVLEEALAWADGCLVGAATVRVHRST 60

Query: 201 -LADDPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
            L   PEL   R    +   P+ +++     L          L   ++       P  A 
Sbjct: 61  CLIHRPELLAQRRLEGRSPQPITVVVSRGRGLEPGLPFFSQPLERWLL------SPGPAQ 114

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
                +      D  D    L  L  RG+  L++ GGA +A + +   LV  + L    +
Sbjct: 115 PAFDAH-----LDLGDWPSCLEELGSRGLRRLVLLGGAELATALLVEGLVQELQLSLCPL 169

Query: 319 VIGEG-GIPSPLEEGYLEKNFMCVRRDYF-GSDVCLEYI 355
           ++G   G  S L      +++  +      G ++ L Y 
Sbjct: 170 LLGGRHGWVSALAPDLTGQSWELIEHRPLGGGEMLLRYR 208


>gi|332879982|ref|ZP_08447666.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681978|gb|EGJ54891.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 145

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 42/109 (38%), Gaps = 17/109 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
           + D  FM  AL  +   V        V  +I  D  +I R             HAE+QA+
Sbjct: 2   TEDEYFMQKALEEAE--VAFEEDEIPVGAIITIDNRIIARAHNMTERLNDVTAHAEMQAI 59

Query: 61  EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
             A     G+  +  T Y+TLEPC+       CA  +    + R+V   
Sbjct: 60  TMAANYLGGKYLKDCTMYLTLEPCAM------CAGALYWSQLSRLVYAA 102


>gi|158334188|ref|YP_001515360.1| cytidine/deoxycytidylate deaminase region [Acaryochloris marina
           MBIC11017]
 gi|158304429|gb|ABW26046.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Acaryochloris marina MBIC11017]
          Length = 165

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEE 62
            ++M  A+  +    G     P V  +I+  DG  I  G            HAE+ AL  
Sbjct: 10  QQWMEKAIALATQA-GAAGEVP-VGAVIIGPDGDCIAEGENRRERDHDPTAHAEIVALRA 67

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +            YVTLEPC      P CA  II+  +  +V    DP        L 
Sbjct: 68  ASQVIQSWRLHECRLYVTLEPC------PMCAGAIIQARLGLLVYGAHDPKTGAIRTVLN 121

Query: 118 W 118
            
Sbjct: 122 L 122


>gi|302873177|ref|YP_003841810.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulovorans 743B]
 gi|307688659|ref|ZP_07631105.1| CMP/dCMP deaminase zinc-binding protein [Clostridium cellulovorans
           743B]
 gi|302576034|gb|ADL50046.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulovorans 743B]
          Length = 169

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 27/122 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWH-VGLTSTNPSVACLIVKD-GIVIGRG----VTAYGGCPH 54
           M +S +D  +++ A   +       T     +  +IV D G ++ +G     T      H
Sbjct: 1   MRLSDYD--YLALAFEEANQAFEEGTYP---IGAVIVDDDGNIVSKGRNRVFTESDCTAH 55

Query: 55  AEVQALEEAGEEA----------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
           AEV A+ +AG +              T Y T EPC      P C   I+  GI+RVV   
Sbjct: 56  AEVDAIRKAGHKLLDIPNKRFVKNNLTLYTTCEPC------PMCTCTILLSGIKRVVWAA 109

Query: 105 DD 106
           DD
Sbjct: 110 DD 111


>gi|50285951|ref|XP_445404.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524708|emb|CAG58310.1| unnamed protein product [Candida glabrata]
          Length = 584

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 12/148 (8%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEEAGEE 66
            ++M  A+  +    G T T  SV  ++V    V+  G +    G  HAE  ALE+  E 
Sbjct: 436 RKYMVQAIEEADK-CGPTKTAFSVGAVLVNGTEVLSVGHSRELPGNTHAEQCALEKYFET 494

Query: 67  ------ARGATAYVTLEPCSHY-GRSPPCAQFIIEC--GIRRVVVCVDDPDVR-VSGRGL 116
                   G   + T+EPCS     + PC Q I+     I  V V V +PD    +   L
Sbjct: 495 HNTDKVPPGTVIFTTMEPCSFRLSGNLPCLQRIMAQDGNISTVFVGVMEPDTFVKNNTSL 554

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTR 144
             L    I   ++   E +  + A+   
Sbjct: 555 TDLENNNINYIQIPGYEEQCKIIAFKGH 582


>gi|89097617|ref|ZP_01170506.1| guanine deaminase [Bacillus sp. NRRL B-14911]
 gi|89087913|gb|EAR67025.1| guanine deaminase [Bacillus sp. NRRL B-14911]
          Length = 159

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 54/154 (35%), Gaps = 32/154 (20%)

Query: 9   RFMS----AALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
            FM     AAL  +  H+G          ++VKDG VIG G            HAE+QA+
Sbjct: 8   YFMENAVEAALENAAAHLGG-----PFGAVVVKDGTVIGTGTNRVTSLNDPTAHAEIQAI 62

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A    +     G   Y + EPC      P C   I     + V       D   +G  
Sbjct: 63  RAACLHLQDFQLSGCEIYTSCEPC------PMCFGAIYWARPKAVYFACTKEDAAAAGFD 116

Query: 116 LQW--------LSQKGIIVDRMMESEGKIFLHAY 141
            Q+        L Q+ I + ++   E  +    +
Sbjct: 117 DQFIYEQLSLPLEQRSIEMRQVKMDEALMPFKLW 150


>gi|322699440|gb|EFY91201.1| cytidine and deoxycytidylate deaminase [Metarhizium acridum CQMa
           102]
          Length = 168

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 55/150 (36%), Gaps = 21/150 (14%)

Query: 4   SSFDARF-MSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTAYG-GCPHAEVQA 59
           +  D +  M  AL  +       S N  V  L+V   DG V+  G T    G  HAE   
Sbjct: 5   TEQDHKMLMRRALALAEKSPPKPS-NFRVGALLVNLDDGQVVAEGYTLECEGNTHAEECC 63

Query: 60  L----EEAGEEARG--------ATAYVTLEPC-SHYGRSPPCAQFIIECG--IRRVVVCV 104
                E+   +  G           Y T+EPC        PC + ++     IR V + V
Sbjct: 64  FIKLAEQHATKEEGLVDIINTPHALYTTMEPCFKRLSGKLPCVERVLRQKSWIREVYLGV 123

Query: 105 DDPDVRVSGR-GLQWLSQKGIIVDRMMESE 133
            +P+  V    G   L   GI V  + E E
Sbjct: 124 QEPEKFVGQNPGRGMLESAGIKVAAVPELE 153


>gi|223938524|ref|ZP_03630416.1| Cytosine deaminase [bacterium Ellin514]
 gi|223892786|gb|EEF59255.1| Cytosine deaminase [bacterium Ellin514]
          Length = 145

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 61/148 (41%), Gaps = 20/148 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAGE 65
           F+ AA+  ++   GL +    +  ++V +G +IGRG       G    HAE+  LE +G 
Sbjct: 4   FLQAAIEEAKK--GLAAGGIPIGSVLVYEGKIIGRGHNQRVQHGSVIHHAEMNCLENSGR 61

Query: 66  E----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +     +  T Y TL PC      P C+   +   I  V+V  +            ++  
Sbjct: 62  QKASVYQKCTLYSTLSPC------PMCSGAALLYKIPHVIVGENVTFQGPE----AYVRS 111

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           +G+ V+ +   E    +  ++  + E  
Sbjct: 112 QGVKVEILQNEECIKLMRDFIAARPELW 139


>gi|194333451|ref|YP_002015311.1| CMP/dCMP deaminase [Prosthecochloris aestuarii DSM 271]
 gi|194311269|gb|ACF45664.1| CMP/dCMP deaminase zinc-binding [Prosthecochloris aestuarii DSM
           271]
          Length = 154

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 55/149 (36%), Gaps = 23/149 (15%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA 63
            FM  A R +            V  ++   +G ++GRG            HAE+ AL  A
Sbjct: 5   YFMEQAFREAIKA--YEKKEIPVGAVVFDSNGSIVGRGYNQVEALSDATAHAEIIALTSA 62

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                 +     T  VTLEPC      P CA  I+   + R++    DP +   G  +  
Sbjct: 63  MATLGSKYLSDCTLAVTLEPC------PMCAGAIVNAKVGRLIFGAYDPKMGACGTVMNI 116

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  +   ++E + +  L  + 
Sbjct: 117 TGNRQLNHQPEVYGGILEHKAQSLLQDFF 145


>gi|23466072|ref|NP_696675.1| cytidine and deoxycytidylate deaminase [Bifidobacterium longum
           NCC2705]
 gi|213693307|ref|YP_002323893.1| CMP/dCMP deaminase, zinc-binding [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|23326799|gb|AAN25311.1| possible cytidine and deoxycytidylate deaminase [Bifidobacterium
           longum NCC2705]
 gi|213524768|gb|ACJ53515.1| CMP/dCMP deaminase, zinc-binding [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 158

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 56/153 (36%), Gaps = 24/153 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY--GGCP--HAEVQA 59
            +D   M  AL  +       + +  V  +++   G ++GRG       G P  HAE+ A
Sbjct: 11  EYDEA-MRRALELA--GQAAAAGDVPVGAVVLDAAGQIVGRGYNTREADGDPLAHAEIIA 67

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           + +A +          T  VTLEPC      P CA   I+  I  +     DP +   G 
Sbjct: 68  MRQAAQALGAWNLADCTLAVTLEPC------PMCAGACIQTHIGTIAFGAWDPKLGACGS 121

Query: 115 GLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
                    I     +   ++E E +  L  + 
Sbjct: 122 IWDIPRDPHIGHSPEVHGGVLEGECQSILTDFF 154


>gi|46190701|ref|ZP_00121128.2| COG0590: Cytosine/adenosine deaminases [Bifidobacterium longum
           DJO10A]
 gi|189440344|ref|YP_001955425.1| cytosine/adenosine deaminase [Bifidobacterium longum DJO10A]
 gi|239622901|ref|ZP_04665932.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|312133678|ref|YP_004001017.1| cumb [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482318|ref|ZP_07941338.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|189428779|gb|ACD98927.1| Cytosine/adenosine deaminase [Bifidobacterium longum DJO10A]
 gi|239514898|gb|EEQ54765.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|291517778|emb|CBK71394.1| tRNA-adenosine deaminase [Bifidobacterium longum subsp. longum F8]
 gi|311772943|gb|ADQ02431.1| CumB [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916198|gb|EFV37600.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|320459488|dbj|BAJ70109.1| putative cytidine/deoxycytidine deaminase [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 149

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 56/153 (36%), Gaps = 24/153 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY--GGCP--HAEVQA 59
            +D   M  AL  +       + +  V  +++   G ++GRG       G P  HAE+ A
Sbjct: 2   EYDEA-MRRALELA--GQAAAAGDVPVGAVVLDAAGQIVGRGYNTREADGDPLAHAEIIA 58

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           + +A +          T  VTLEPC      P CA   I+  I  +     DP +   G 
Sbjct: 59  MRQAAQALGAWNLADCTLAVTLEPC------PMCAGACIQTHIGTIAFGAWDPKLGACGS 112

Query: 115 GLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
                    I     +   ++E E +  L  + 
Sbjct: 113 IWDIPRDPHIGHSPEVHGGVLEGECQSILTDFF 145


>gi|186684043|ref|YP_001867239.1| CMP/dCMP deaminase, zinc-binding [Nostoc punctiforme PCC 73102]
 gi|186466495|gb|ACC82296.1| CMP/dCMP deaminase, zinc-binding [Nostoc punctiforme PCC 73102]
          Length = 161

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 18/121 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEE 62
             +MS AL  +    G     P V  +I+   G ++ +G            HAE+ AL+ 
Sbjct: 12  QEWMSCALELA-KVAGDAGEVP-VGAVIIDSTGKLLAQGENRKERDKDPTAHAEILALKT 69

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A    +       T YVTLEPC      P CA  I++  + ++V  VDD         + 
Sbjct: 70  AATTLQNWHLNECTLYVTLEPC------PMCAGAILQARVGQLVYGVDDTKTGAIRTVIN 123

Query: 118 W 118
            
Sbjct: 124 I 124


>gi|329889978|ref|ZP_08268321.1| tRNA-specific adenosine deaminase [Brevundimonas diminuta ATCC
           11568]
 gi|328845279|gb|EGF94843.1| tRNA-specific adenosine deaminase [Brevundimonas diminuta ATCC
           11568]
          Length = 154

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 36/107 (33%), Positives = 49/107 (45%), Gaps = 19/107 (17%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRG----VTAYGGCPHAEVQALEEAGEE 66
            AL  ++      +    V  +IV +  G V+GRG    +TA+    HAE+ AL +A  +
Sbjct: 1   MALDLAQAAA--EAGEVPVGAVIVDENTGEVLGRGQNGPITAHDPSAHAEIVALRDAAAK 58

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            +       T YVTLEPC+       CA  I    I RVV   DDP 
Sbjct: 59  LQNYRLTDLTLYVTLEPCAM------CAGAISHARIGRVVWGADDPK 99


>gi|254387285|ref|ZP_05002544.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptomyces sp.
           Mg1]
 gi|194346089|gb|EDX27055.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptomyces sp.
           Mg1]
          Length = 262

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 65/187 (34%), Gaps = 14/187 (7%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD------ 203
             +   +  + D         S PI+G         LRA +D ++VG  TV  +      
Sbjct: 44  HWLRANMVSTLDG-AAQHEGRSQPISGESDMRIFGTLRALADVVVVGAETVRQEGYRPAR 102

Query: 204 --DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP----VLA 257
                   R    Q  +P   ++     L     +  T+ L P +++T +  P      A
Sbjct: 103 ARADFAARREAAGQGPAPAIAVITASMDLDFSLPLY-TSPLVPTLVITGSAAPSDRVAAA 161

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
            A   + +        D  + +  L  RG+   L EGG  +   F+ +  +D + L  S 
Sbjct: 162 TAAGAEVVVAGEGAAVDPARAVRELALRGMRRQLTEGGPRLLGQFVAADALDELCLTISP 221

Query: 318 IVIGEGG 324
           ++     
Sbjct: 222 MLTAGDA 228


>gi|198443277|pdb|3DH1|A Chain A, Crystal Structure Of Human Trna-Specific Adenosine-34
           Deaminase Subunit Adat2
 gi|198443278|pdb|3DH1|B Chain B, Crystal Structure Of Human Trna-Specific Adenosine-34
           Deaminase Subunit Adat2
 gi|198443279|pdb|3DH1|C Chain C, Crystal Structure Of Human Trna-Specific Adenosine-34
           Deaminase Subunit Adat2
 gi|198443280|pdb|3DH1|D Chain D, Crystal Structure Of Human Trna-Specific Adenosine-34
           Deaminase Subunit Adat2
          Length = 189

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 23/126 (18%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
            ++M  A+  ++  +  T     V CL+V +  V+G+G            HAE+ A+++ 
Sbjct: 27  EKWMEEAMHMAKEALENTEV--PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQV 84

Query: 64  GEEARGA-----------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            +  R +             YVT+EPC        CA  +    I  VV    +      
Sbjct: 85  LDWCRQSGKSPSEVFEHTVLYVTVEPCIM------CAAALRLMKIPLVVYGCQNERFGGC 138

Query: 113 GRGLQW 118
           G  L  
Sbjct: 139 GSVLNI 144


>gi|153807590|ref|ZP_01960258.1| hypothetical protein BACCAC_01872 [Bacteroides caccae ATCC 43185]
 gi|149129952|gb|EDM21164.1| hypothetical protein BACCAC_01872 [Bacteroides caccae ATCC 43185]
          Length = 148

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 56/154 (36%), Gaps = 38/154 (24%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
             S  D R++  A  ++            V  LIVKD ++I  G     G P        
Sbjct: 6   KQSELDKRYIRMASIWAENSYCQRRK---VGALIVKDKMIISDGY---NGTPSGFENVCE 59

Query: 54  -----------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                      HAE  A   +  +   + GAT YVT  PC        CA+ II+ GI+R
Sbjct: 60  DENNLTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CAKLIIQAGIKR 113

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
           VV             G++ L + G+ V      E
Sbjct: 114 VVYSEHYRL----EDGIELLKRAGVEVIYTELDE 143


>gi|121594624|ref|YP_986520.1| CMP/dCMP deaminase [Acidovorax sp. JS42]
 gi|120606704|gb|ABM42444.1| CMP/dCMP deaminase, zinc-binding protein [Acidovorax sp. JS42]
          Length = 361

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 65/188 (34%), Gaps = 22/188 (11%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
           S DA +M      ++      +    V  ++V+DG VI  G  A         HAE+ AL
Sbjct: 4   SDDAHWMRE--AIAQARAAQQAGEVPVGAVLVRDGQVIATGRNAPIAGHDPTAHAEMAAL 61

Query: 61  EE-----AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
                  +     G T YVTLEPC+       C+  ++   + RVV    D     +G  
Sbjct: 62  RAGAAQLSNYRLDGCTLYVTLEPCAM------CSGAMLHARLPRVVYGAADAKTGAAGSV 115

Query: 116 LQW-----LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG 170
           +       L+ +  +   ++  E    L  +   +   +    L     + + +      
Sbjct: 116 VNLFAEPRLNHQTAVQGGVLADECGALLSDFFRDRRRAQRAQQLAAHPLRQDALRTPDAA 175

Query: 171 SVPITGFI 178
              + G  
Sbjct: 176 FAHLDGPA 183


>gi|295099508|emb|CBK88597.1| Deoxycytidylate deaminase [Eubacterium cylindroides T2-87]
          Length = 164

 Score = 69.5 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 56/152 (36%), Gaps = 33/152 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGV-------------TAYG 50
           S+D  FMS A   ++        +  V   IV     V+G G               A  
Sbjct: 8   SWDEYFMSMAHLSAKRSK---DPSTQVGACIVNSQKRVVGLGYNGFPKGCDDNEFPWARD 64

Query: 51  GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           G           HAE+ A+  + ++  G T YV+L PC+       CA+ II+ GI+ VV
Sbjct: 65  GEFLDTKYPYVVHAELNAILNSIQDLNGCTIYVSLFPCNE------CAKAIIQSGIKCVV 118

Query: 102 VCVDDPD-VRVSGRGLQWLSQKGIIVDRMMES 132
              D       +    +     G+ + ++   
Sbjct: 119 YESDKYAGTEANIASKKMFRDAGVELVQLTYE 150


>gi|311031602|ref|ZP_07709692.1| hypothetical protein Bm3-1_13811 [Bacillus sp. m3-13]
          Length = 190

 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 67/183 (36%), Gaps = 34/183 (18%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
           S+D  FM+ +   +      T T  +V   IV+D  +I  G      G            
Sbjct: 6   SWDQYFMAQSHLLALRS---TCTRLAVGATIVRDKRIIAGGYNGSIAGGVHCIDEGCYVI 62

Query: 54  --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE+ AL +    G    GA  YVT  PC H      C + II+ GI+ V  
Sbjct: 63  DNHCVRTIHAEMNALLQCSKFGVPTTGAEIYVTHFPCLH------CCKAIIQAGIKTVYY 116

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            ++  +   +   L+   Q  + V+++   E  + L+              L+ + + D 
Sbjct: 117 AMEYKNHPYA---LEMFEQADVRVEQVELDEMAVSLNDPEKIGFINSLIERLEESGASDE 173

Query: 163 MIG 165
            I 
Sbjct: 174 EIK 176


>gi|329962142|ref|ZP_08300153.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides fluxus YIT 12057]
 gi|328530790|gb|EGF57648.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides fluxus YIT 12057]
          Length = 146

 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 56/151 (37%), Gaps = 32/151 (21%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC--------- 52
              + D R++  A   S W          V  LIVKD ++I  G                
Sbjct: 8   KQEALDKRYIRMA---SIWAENSYCIRRQVGALIVKDQMIISDGYNGTPAGFENICEDEN 64

Query: 53  -------PHAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  A   +  +   + GAT YVT  PC        CA+ II+ GI+RVV 
Sbjct: 65  NVTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CAKLIIQAGIKRVVY 118

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
                       G++ L + GI V  +  S+
Sbjct: 119 SEKYRL----EDGIELLKRAGIEVVYIAMSD 145


>gi|255076837|ref|XP_002502085.1| predicted protein [Micromonas sp. RCC299]
 gi|226517350|gb|ACO63343.1| predicted protein [Micromonas sp. RCC299]
          Length = 193

 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 46/124 (37%), Gaps = 21/124 (16%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA----LEE 62
           M  AL  +   +      P V C++V+DG V+  G         G  HAE +A    L  
Sbjct: 1   MRVALEEAEGALAR-WEVP-VGCVVVRDGEVVASGSNRTNEKRNGTRHAEFEAVDELLAR 58

Query: 63  AGEEARGA-----TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            G +A  A     + YVT+EPC        CA  +   G  RV     +     +G  L 
Sbjct: 59  HGGDAVAAGFDRCSLYVTVEPCIM------CAGALSLLGFERVTYGCGNDKFGGNGSILS 112

Query: 118 WLSQ 121
               
Sbjct: 113 IHDD 116


>gi|154491043|ref|ZP_02030984.1| hypothetical protein PARMER_00962 [Parabacteroides merdae ATCC
           43184]
 gi|154088791|gb|EDN87835.1| hypothetical protein PARMER_00962 [Parabacteroides merdae ATCC
           43184]
          Length = 144

 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 56/147 (38%), Gaps = 38/147 (25%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
             D R++  A   + W          V  LIVKD ++I  G     G P           
Sbjct: 10  ELDKRYLRMA---AVWAENSYCKRRQVGALIVKDQMIISDGY---NGTPSGFENVCEDEH 63

Query: 54  --------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  A+     +   ++GAT YVT  PC        CA+ II+ GI+RVV 
Sbjct: 64  NVTKPYVLHAEANAITKVAASSNSSKGATIYVTSAPCIE------CAKLIIQSGIKRVVY 117

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRM 129
                       G   L + G+I+D +
Sbjct: 118 SEKYR----VEDGCNLLRRAGVIIDYI 140


>gi|304437889|ref|ZP_07397836.1| competence protein ComEB [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369111|gb|EFM22789.1| competence protein ComEB [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 158

 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 55/160 (34%), Gaps = 32/160 (20%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGV-------------TAYG 50
           S+D  FM  AL  +         +  V   IV +   ++G G                  
Sbjct: 4   SWDEYFMGVALFSAYRSK---DPHTQVGACIVNEDKHIVGVGYNGMPNGCDDHEYPWGRT 60

Query: 51  GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           G           HAE+ A+  A    +G   Y +L PC+       C + II+ GIR V+
Sbjct: 61  GEFAEQKYPYVVHAELNAILNASTSLKGCRIYTSLFPCNE------CCKAIIQSGIREVI 114

Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
              D      S +  + +     +  R ME+E       +
Sbjct: 115 YLSDKYAAADSTKASKRMLASANVTCRRMETELTEVPVRF 154


>gi|329957514|ref|ZP_08297989.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides clarus YIT 12056]
 gi|328522391|gb|EGF49500.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides clarus YIT 12056]
          Length = 144

 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 53/145 (36%), Gaps = 17/145 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
           D  +M  AL  ++   G     P V  ++V    +I R      T      HAE+QA+  
Sbjct: 3   DTDYMKQALLEAQKA-GERGEVP-VGAVVVCKDRIIARAHNLTETLTDVTAHAEMQAITA 60

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G+     T YVT+EPC        CA  I      R+V   +D          Q
Sbjct: 61  AAATLGGKYLNECTLYVTVEPC------VMCAGAIAWAQTGRLVFGAEDEKRGYQRYAPQ 114

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYL 142
            L  K  +V  ++  E    +  + 
Sbjct: 115 ALHPKTSVVKGVLADECAALMKDFF 139


>gi|255693703|ref|ZP_05417378.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides
           finegoldii DSM 17565]
 gi|260620520|gb|EEX43391.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides
           finegoldii DSM 17565]
          Length = 145

 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 51/146 (34%), Gaps = 17/146 (11%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
            D  FM  AL  +            V  ++V    +I R      T      HAE+QA+ 
Sbjct: 3   DDTYFMKQALIEA--GKAAERGEVPVGAVVVCKERIIARAHNLTETLNDVTAHAEMQAIT 60

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A     G+     T YVT+EPC        CA  I      ++V   +D         +
Sbjct: 61  AAANVLGGKYLNECTLYVTVEPC------VMCAGAIAWAQTGKLVFGAEDEKRGYQKYAV 114

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYL 142
             L  K ++V  ++  E    +  + 
Sbjct: 115 SALHPKTVVVKGLLADECAALMKNFF 140


>gi|114609579|ref|XP_518775.2| PREDICTED: hypothetical protein LOC463037 isoform 2 [Pan
           troglodytes]
          Length = 191

 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 23/126 (18%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
            ++M  A+  ++  +  T     V CL+V +  V+G+G            HAE+ A+++ 
Sbjct: 23  EKWMEEAMHMAKEALENTEV--PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQV 80

Query: 64  GEEARGA-----------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            +  R +             YVT+EPC        CA  +    I  VV    +      
Sbjct: 81  LDWCRQSGKSPSEVFEHTVLYVTVEPCIM------CAAALRLMKIPLVVYGCQNERFGGC 134

Query: 113 GRGLQW 118
           G  L  
Sbjct: 135 GSVLNI 140


>gi|239616728|ref|YP_002940050.1| CMP/dCMP deaminase zinc-binding [Kosmotoga olearia TBF 19.5.1]
 gi|239505559|gb|ACR79046.1| CMP/dCMP deaminase zinc-binding [Kosmotoga olearia TBF 19.5.1]
          Length = 170

 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 60/160 (37%), Gaps = 47/160 (29%)

Query: 5   SFDARFMSAA--LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---------- 52
            +D+ FMS A  ++  R           V  +IV++  ++  G                 
Sbjct: 24  DWDSYFMSLAHLIKE-RSSCLHRK----VGAIIVRENRILATGYNQPPSGFPHCNEIECI 78

Query: 53  -----------------PHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFI 92
                             HAE  AL +A   G    GAT YVT +PCS       CA+ I
Sbjct: 79  RDALSIQSGENQEICYAAHAEQNALSQAAKFGISTDGATIYVTHKPCSI------CARLI 132

Query: 93  IECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
           I  GI+RVV  VD PD          L + G+I++    +
Sbjct: 133 INAGIKRVVYDVDYPDPLSE----FLLEKTGVILEHYENA 168


>gi|111224596|ref|YP_715390.1| putative riboflavin/cytosine deaminase [Frankia alni ACN14a]
 gi|111152128|emb|CAJ63855.1| Putative riboflavin/cytosine deaminase [Frankia alni ACN14a]
          Length = 187

 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 58/156 (37%), Gaps = 33/156 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPH--AEVQALE 61
             D  +++ A+   R     +ST  SV  LIV  DG  +  G  +    PH  AE  AL 
Sbjct: 17  DRDRYWLARAVELGRR-CPPSSTAYSVGALIVAADGTPLAEGY-SRAEEPHDHAEEVALR 74

Query: 62  EAGEEA---------------------------RGATAYVTLEPCSHYGRSP-PCAQFII 93
                                             GAT Y +LEPCS     P  C + I+
Sbjct: 75  RLAARLDASAAGGDPGGGVDSGGGGDPGVGVDPAGATVYSSLEPCSARASRPWTCTELIL 134

Query: 94  ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
             GI RVV    +P + V   G + L+  G+ V  +
Sbjct: 135 AAGIGRVVFAWREPSLFVDCDGAERLAAAGVEVVEI 170


>gi|46128753|ref|XP_388930.1| hypothetical protein FG08754.1 [Gibberella zeae PH-1]
          Length = 167

 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 53/143 (37%), Gaps = 22/143 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVT-AYGGCPHAEVQALEEAGEEA 67
           M  AL  +        TN  V  LIV+  D  +I  G T    G  HAE   L +  E+ 
Sbjct: 13  MQRALELANNSPPK-PTNFRVGALIVRLSDDTIIAEGYTLELPGNTHAEETCLMKLAEQY 71

Query: 68  RGAT-------------AYVTLEPC-SHYGRSPPCAQFIIECG--IRRVVVCVDDPDVRV 111
            G T              Y T+EPC        PC + ++     I +V V V +P+  V
Sbjct: 72  -GTTEEKLSEVFNTPHALYTTVEPCFKRLSGKLPCVERVLRQKSWITQVYVGVQEPETFV 130

Query: 112 SGRGLQW-LSQKGIIVDRMMESE 133
                +  L   GI +  +   E
Sbjct: 131 GENTGRKTLEDAGIEIRHVSGLE 153


>gi|38233977|ref|NP_939744.1| hypothetical protein DIP1392 [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200239|emb|CAE49923.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 269

 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 72/211 (34%), Gaps = 21/211 (9%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
                      S +         S P+      + +  LR  +DAI+VG  T   ++   
Sbjct: 31  NEPECRAIAITSING-SATLSGVSGPMGDQTDADLLIQLRGWADAIVVGAETARKENYGP 89

Query: 208 TCRLNGLQ-EHS-------PMRIILDPHFKLSLDSKIIKTAL---LAPVIIVTENDDPVL 256
               +G++ +         P   +L         S++    L   L+P++I  +  +   
Sbjct: 90  VVLPHGIKNQRQKLGRCGLPKLTLLSKSLYFDFSSELFSPDLPSELSPLVITQQPANNSE 149

Query: 257 ALAFR-----KKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
               R        + +I        LK     L  R +  + +EGG +V    ++  +VD
Sbjct: 150 QWDQRLQKLIDVGVEVIVAPTSTNPLKIAFDALHARRLKKISIEGGPSVYRQALSLGIVD 209

Query: 310 SIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
            + L  +  +I    + SPL     + +F  
Sbjct: 210 RLHLTIAPNII--CPVESPLFGKISDDSFTT 238


>gi|116753576|ref|YP_842694.1| CMP/dCMP deaminase, zinc-binding [Methanosaeta thermophila PT]
 gi|116665027|gb|ABK14054.1| CMP/dCMP deaminase, zinc-binding protein [Methanosaeta thermophila
           PT]
          Length = 144

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 56/157 (35%), Gaps = 41/157 (26%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
           M     D  FM  A   ++    L +    V  +IV+D  ++  G               
Sbjct: 1   MDRPGLDEYFMEIASVVAKRSTCLRN---RVGAVIVRDKRILSTGYNGAPTGLEHCDVAG 57

Query: 47  -----------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFI 92
                             HAE  A+ +A   G    GAT Y T +PC        CA+ +
Sbjct: 58  CLREKVESGTRHELCRAVHAEQNAIIQAALHGVSIEGATLYCTHQPCI------LCAKMM 111

Query: 93  IECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           I   IRRVV     PD       L++L Q GI V R+
Sbjct: 112 INARIRRVVYRNQYPD----EGALRFLEQAGIEVVRI 144


>gi|225012149|ref|ZP_03702586.1| CMP/dCMP deaminase zinc-binding [Flavobacteria bacterium MS024-2A]
 gi|225003704|gb|EEG41677.1| CMP/dCMP deaminase zinc-binding [Flavobacteria bacterium MS024-2A]
          Length = 143

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 58/145 (40%), Gaps = 36/145 (24%)

Query: 8   ARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
            ++  A L+ ++ W          V  LIVKD ++I  G     G P             
Sbjct: 7   EKYDKAYLKMAKTWGQLSYCDRKKVGALIVKDRMIISDGY---NGTPSGFENVCEDEEHY 63

Query: 54  ------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                 HAE  A+     + +  +GAT Y+TL PC        C++ I + GI RVV   
Sbjct: 64  TKWYVLHAEANAILKVASSTQSCKGATLYITLSPC------KDCSKLIHQSGIVRVVYAK 117

Query: 105 DDPDVRVSGRGLQWLSQKGIIVDRM 129
              D      GL +L + G+ +D +
Sbjct: 118 AYKDT----TGLDFLKKAGVQLDHV 138


>gi|124107608|ref|NP_872309.2| tRNA-specific adenosine deaminase 2 [Homo sapiens]
 gi|74750199|sp|Q7Z6V5|ADAT2_HUMAN RecName: Full=tRNA-specific adenosine deaminase 2; AltName:
           Full=Deaminase domain-containing protein 1; AltName:
           Full=tRNA-specific adenosine-34 deaminase subunit ADAT2
 gi|31652308|emb|CAD92490.1| novel protein similar to yeast and bacterial cytosine deaminase
           [Homo sapiens]
 gi|119568252|gb|EAW47867.1| deaminase domain containing 1, isoform CRA_a [Homo sapiens]
          Length = 191

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 23/126 (18%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
            ++M  A+  ++  +  T     V CL+V +  V+G+G            HAE+ A+++ 
Sbjct: 23  EKWMEEAMHMAKEALENTEV--PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQV 80

Query: 64  GEEARGA-----------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            +  R +             YVT+EPC        CA  +    I  VV    +      
Sbjct: 81  LDWCRQSGKSPSEVFEHTVLYVTVEPCIM------CAAALRLMKIPLVVYGCQNERFGGC 134

Query: 113 GRGLQW 118
           G  L  
Sbjct: 135 GSVLNI 140


>gi|110638611|ref|YP_678820.1| cytidine/deoxycytidylate deaminase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110281292|gb|ABG59478.1| cytidine/deoxycytidylate deaminase (dCMP deaminase) [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 159

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 48/125 (38%), Gaps = 36/125 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-------------G 51
            FD  +M  A+  ++    +      V  ++ KD  +I  G                  G
Sbjct: 6   DFDDIYMELAVNLAKRSHCIKR---HVGAVLTKDTRIISIGYNGPPEKTHNCDEEWPEEG 62

Query: 52  CP-----------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
           CP           HAE  A+  A   G E +GAT YVTL PC        CA+ +   G+
Sbjct: 63  CPRDSKGSCSLALHAEENAILFAVKNGTEVKGATIYVTLSPCI------SCARLLFASGV 116

Query: 98  RRVVV 102
           ++V+ 
Sbjct: 117 KKVIY 121


>gi|171058718|ref|YP_001791067.1| CMP/dCMP deaminase zinc-binding [Leptothrix cholodnii SP-6]
 gi|170776163|gb|ACB34302.1| CMP/dCMP deaminase zinc-binding [Leptothrix cholodnii SP-6]
          Length = 231

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 48/129 (37%), Gaps = 21/129 (16%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK---DG-IVIGRGVTAY----GGCPHA 55
           +S D   M  AL  +     L    P V  +IV+   DG  VI  G            HA
Sbjct: 8   TSRDENTMRLALDQALNAH-LAGEVP-VGAVIVRHTADGPQVIATGYNRPVTTNDPTAHA 65

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ AL  A              Y+TLEPC+       CA  ++   +RRVV    DP   
Sbjct: 66  ELVALRHAATLLENYRLPDCEIYITLEPCAM------CAMALLHARLRRVVFGAWDPKTG 119

Query: 111 VSGRGLQWL 119
            +G  +   
Sbjct: 120 AAGSVVNLF 128


>gi|160885114|ref|ZP_02066117.1| hypothetical protein BACOVA_03112 [Bacteroides ovatus ATCC 8483]
 gi|237718265|ref|ZP_04548746.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|260174220|ref|ZP_05760632.1| putative cytosine/adenosine deaminase [Bacteroides sp. D2]
 gi|293368778|ref|ZP_06615382.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides ovatus SD CMC 3f]
 gi|299147814|ref|ZP_07040877.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
           3_1_23]
 gi|315922489|ref|ZP_07918729.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156109464|gb|EDO11209.1| hypothetical protein BACOVA_03112 [Bacteroides ovatus ATCC 8483]
 gi|229452449|gb|EEO58240.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|292636083|gb|EFF54571.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides ovatus SD CMC 3f]
 gi|298513997|gb|EFI37883.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
           3_1_23]
 gi|313696364|gb|EFS33199.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 145

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 50/146 (34%), Gaps = 17/146 (11%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
            D  FM  AL  +            V  ++V    +I R      T      HAE+QA+ 
Sbjct: 3   DDIYFMKQALIEA--GKAAERGEVPVGAVVVCKERIIARAHNLTETLNDVTAHAEMQAIT 60

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A     G+     T YVT+EPC        CA  I      ++V   +D          
Sbjct: 61  AAANVLGGKYLNECTLYVTVEPC------VMCAGAIAWAQTGKLVFGAEDEKRGYQKYAG 114

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYL 142
             L  K ++V  +M  E    +  + 
Sbjct: 115 SALHPKTVVVKGVMADECATLMKEFF 140


>gi|319782463|ref|YP_004141939.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317168351|gb|ADV11889.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 233

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 1/112 (0%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
           + LD   KL      I    +  ++     D  +  LA    +  +      DL  +L +
Sbjct: 89  VALDASGKLHFSKPDIGGDHVVVLLGRDVADSHLAELAADGVSYIVAETGDIDLAAMLEV 148

Query: 282 LV-GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
           L    G++ LL+EGGA++  SF+ + LVD + L  +  + G       +E G
Sbjct: 149 LGRELGISRLLLEGGASINGSFLAAGLVDELSLLVAPAIDGRAANQGFVEFG 200


>gi|238926636|ref|ZP_04658396.1| dCMP deaminase [Selenomonas flueggei ATCC 43531]
 gi|238885582|gb|EEQ49220.1| dCMP deaminase [Selenomonas flueggei ATCC 43531]
          Length = 158

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 55/160 (34%), Gaps = 32/160 (20%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGV-------------TAYG 50
           S+D  FM  AL  +         +  V   IV +   ++G G                  
Sbjct: 4   SWDEYFMGVALFSAYRSK---DPHTQVGACIVNEDKHIVGVGYNGMPNGCDDHEYPWGRT 60

Query: 51  GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           G           HAE+ A+  A    +G   Y +L PC+       C + II+ GIR V+
Sbjct: 61  GEFAEQKYPYVVHAELNAILNASTSLKGCRIYTSLFPCNE------CCKAIIQSGIREVI 114

Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
              D      S +  + +     +  R ME+E       +
Sbjct: 115 YLSDKYATADSTKASKRMLASANVTCRRMETELTEVPVRF 154


>gi|313901005|ref|ZP_07834493.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Clostridium sp. HGF2]
 gi|312953963|gb|EFR35643.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Clostridium sp. HGF2]
          Length = 164

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 58/152 (38%), Gaps = 33/152 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
           ++D  FM  A   ++        +  V  +IV  +  V+  G                  
Sbjct: 8   TWDEYFMGLAHLSAKRSK---DPSTQVGAVIVSSEHRVVSIGYNGFPNGCSDDEFPWDRE 64

Query: 47  -----TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                T Y    HAE+ A+  +  + +G + YV+L PC+       CA+ II+ GI R+V
Sbjct: 65  GDFGNTKYPYVVHAELNAILNSKHDLKGCSIYVSLFPCNE------CAKAIIQSGISRIV 118

Query: 102 VCVDDP-DVRVSGRGLQWLSQKGIIVDRMMES 132
              D       +    + L   G+ + ++  +
Sbjct: 119 YESDKYAHTEGTIASKRMLRSAGVELVQLPYA 150


>gi|157363614|ref|YP_001470381.1| CMP/dCMP deaminase zinc-binding [Thermotoga lettingae TMO]
 gi|157314218|gb|ABV33317.1| CMP/dCMP deaminase zinc-binding [Thermotoga lettingae TMO]
          Length = 186

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 47/134 (35%), Gaps = 39/134 (29%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG------------- 51
            +D  FM             T T+  V  +IV++  ++  G                   
Sbjct: 33  PWDEYFMRICYIVKERS---TCTHRKVGAVIVRENRILATGYNQPPSAFPHCDSTGCIRD 89

Query: 52  --------------CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  AL +A   G    GAT YVT +PCS       CA+ ++ 
Sbjct: 90  HLRIPSGQNQEICYALHAEQNALMQAAKFGISTNGATMYVTTKPCSV------CARLLVN 143

Query: 95  CGIRRVVVCVDDPD 108
            GI RVV   + PD
Sbjct: 144 AGITRVVYVQEYPD 157


>gi|320095329|ref|ZP_08027018.1| tRNA-specific adenosine deaminase [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319977741|gb|EFW09395.1| tRNA-specific adenosine deaminase [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 443

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 49/131 (37%), Gaps = 18/131 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHA 55
           M ++      M  AL  +      T   P V  +++   G V+G+G            HA
Sbjct: 1   MTLTDRYREAMGKALYLADRAR-ETGDVP-VGAVVLDTLGRVVGKGWNCREKDRDPAGHA 58

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ AL +A    +     G T  V+LEPC        CA  I+   + RVV    DP   
Sbjct: 59  EIVALRDAARTLKRWNLVGCTLVVSLEPC------TMCAGAIVSARVDRVVFGAWDPKAG 112

Query: 111 VSGRGLQWLSQ 121
            +G     L  
Sbjct: 113 AAGSVRDVLRD 123


>gi|189462145|ref|ZP_03010930.1| hypothetical protein BACCOP_02827 [Bacteroides coprocola DSM 17136]
 gi|189431118|gb|EDV00103.1| hypothetical protein BACCOP_02827 [Bacteroides coprocola DSM 17136]
          Length = 144

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 54/147 (36%), Gaps = 32/147 (21%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC------------- 52
            D R+M  A  +S            V  LIVK+ ++I  G                    
Sbjct: 11  LDKRYMQMATIWSENSYCNRRK---VGALIVKNKMIISDGYNGTPAGFENVCEDEHGITK 67

Query: 53  ---PHAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               HAE  A   +  +   + GAT YVT  PC        CA+ II+ GI+RVV     
Sbjct: 68  PYVLHAEANAITKIARSNNSSEGATLYVTASPCIE------CAKLIIQAGIKRVVFAEKY 121

Query: 107 PDVRVSGRGLQWLSQKGIIVDRMMESE 133
                   GL+ L +  I +  +  +E
Sbjct: 122 RL----EDGLELLKRANIELVYLTPNE 144


>gi|189220193|ref|YP_001940833.1| Cytosine/adenosine deaminase [Methylacidiphilum infernorum V4]
 gi|189187051|gb|ACD84236.1| Cytosine/adenosine deaminase [Methylacidiphilum infernorum V4]
          Length = 173

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 54/150 (36%), Gaps = 19/150 (12%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
           S D  FM  AL  ++      +    V  +IV+   ++G G            HAE++A+
Sbjct: 15  SRDYYFMGLALEKAKEA--FDNGEVPVGAVIVRGEEILGFGRNRVERHRDVTAHAEMEAI 72

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD--VRVSG 113
            ++ +          T YVT EPC        C   +    I RVV  + DP        
Sbjct: 73  RQSQQRVGDWRLDSTTLYVTKEPCLM------CWGAVFLSRIERVVFGISDPKQADFCCI 126

Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLT 143
           +      +K  I+  +   E    +H +  
Sbjct: 127 KDFFTARKKPEILPGVRSQESLELMHQFFF 156


>gi|294494911|ref|YP_003541404.1| CMP/dCMP deaminase zinc-binding protein [Methanohalophilus mahii
           DSM 5219]
 gi|292665910|gb|ADE35759.1| CMP/dCMP deaminase zinc-binding protein [Methanohalophilus mahii
           DSM 5219]
          Length = 156

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 53/157 (33%), Gaps = 44/157 (28%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------- 46
           MP   S D  F+  A   ++    L +    V  +IV+D  ++  G              
Sbjct: 1   MPYRPSVDEYFLEIATVIAKRSTCLRN---RVGAVIVRDKQILSTGYNGAPSNMEHCLDI 57

Query: 47  --------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCA 89
                                HAE  A+ +A   G    GAT Y T +PC        C 
Sbjct: 58  GCIRQKNNIESGTRHEKCRAVHAEQNAIIQAALHGAGIEGATLYCTHQPCI------LCT 111

Query: 90  QFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           + II   I+RVV     PD       L + +  G+ +
Sbjct: 112 KMIINSRIKRVVYLTSYPDT----DALDFFNDAGVEI 144


>gi|213961866|ref|ZP_03390132.1| cytidine/deoxycytidylate deaminase family protein [Capnocytophaga
           sputigena Capno]
 gi|213955655|gb|EEB66971.1| cytidine/deoxycytidylate deaminase family protein [Capnocytophaga
           sputigena Capno]
          Length = 146

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 38/146 (26%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
           +D  +M  A+ +++           V  ++VKD ++I  G     G P            
Sbjct: 12  YDKAYMRMAMEWAKLSYSQRK---QVGAIMVKDRMIISDGY---NGTPTGFDNCCEDEEG 65

Query: 54  -------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A+     + + + GAT Y+T+ PC        C++ I + GI+RVV  
Sbjct: 66  NTHWYVLHAEANAIMKVASSTQSSEGATLYITMSPCKE------CSKLIYQSGIKRVVYK 119

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRM 129
               D      GL +L + G+ +  +
Sbjct: 120 EGYRD----NEGLAFLKKAGVELVHL 141


>gi|89901064|ref|YP_523535.1| CMP/dCMP deaminase [Rhodoferax ferrireducens T118]
 gi|89345801|gb|ABD70004.1| CMP/dCMP deaminase, zinc-binding [Rhodoferax ferrireducens T118]
          Length = 363

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 22/157 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
           +P +  D + M  AL  +   +   +    V  +++KDG++I  G  A         HAE
Sbjct: 11  LPPTMTDDQAMQLALTQA--GLAALAGEVPVGAVVLKDGVLIASGRNASIETQDPSAHAE 68

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL  A          G   +VTLEPC+       C   ++   ++RVV    DP    
Sbjct: 69  IVALRAAALALGNYRLDGCELFVTLEPCAM------CVGAMLHARLQRVVYGAPDPKTGA 122

Query: 112 SGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLT 143
           +G  L       L+    +   ++       L  +  
Sbjct: 123 AGSVLDLFANPQLNHHTEVQGGVLADACAELLQRFFQ 159


>gi|322434989|ref|YP_004217201.1| CMP/dCMP deaminase zinc-binding protein [Acidobacterium sp.
           MP5ACTX9]
 gi|321162716|gb|ADW68421.1| CMP/dCMP deaminase zinc-binding protein [Acidobacterium sp.
           MP5ACTX9]
          Length = 292

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  ++V +  +I RG            HAE+ AL EAG             Y TLEPC+
Sbjct: 25  PVGAVLVLNNEIIARGRNRVILDSDPTAHAEIVALREAGRILGNYRLENCDLYTTLEPCA 84

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  CA  I+   IRR++    DP     G  L       L+ +  +   ++  E  
Sbjct: 85  M------CAGAILHARIRRLIYAAADPKAGACGSALDVMNHPRLNHRMEVAVGLLAEECG 138

Query: 136 IFLHAYL 142
             L ++ 
Sbjct: 139 EMLTSFF 145


>gi|213965664|ref|ZP_03393857.1| tRNA-specific adenosine deaminase [Corynebacterium amycolatum SK46]
 gi|213951615|gb|EEB63004.1| tRNA-specific adenosine deaminase [Corynebacterium amycolatum SK46]
          Length = 147

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 57/155 (36%), Gaps = 27/155 (17%)

Query: 11  MSAALRFSRWHVGLTST-NPSVACLIVK-DGIVIGRGVTAY--GGCP--HAEVQALEEA- 63
           M  A+  +      T+  +  V  ++V  +G V+GRG       G P  HAEV AL EA 
Sbjct: 1   MRLAIAEA----AHTAPGDVPVGAVVVDAEGKVVGRGSNRREADGDPLAHAEVIALREAT 56

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                G      T  VTLEPC        CA   +   + RVV     P     G     
Sbjct: 57  RAVGDGWRLEQCTLVVTLEPC------VMCAGACVMGRVGRVVFGAWSPKTGACGSIADV 110

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYLTRQVEK 148
           +          +   ++  E  ++L  +  RQ + 
Sbjct: 111 IRDPAHAFTPQVRGGVLADECSVYLREFFERQRQS 145


>gi|325279197|ref|YP_004251739.1| Guanine deaminase [Odoribacter splanchnicus DSM 20712]
 gi|324311006|gb|ADY31559.1| Guanine deaminase [Odoribacter splanchnicus DSM 20712]
          Length = 156

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 43/121 (35%), Gaps = 24/121 (19%)

Query: 6   FDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57
           ++ +FM  A+R +    +   G          ++VK+G +I               HAEV
Sbjct: 2   YEEKFMREAIRLAVENVKQGTGG-----PFGAVVVKEGKIIAACANTVTPDCDPTAHAEV 56

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+ EA  +       G   Y + EPC      P C   I      RV       D  ++
Sbjct: 57  NAIREACRKLDTFQLGGCEIYASCEPC------PMCLGAIYWARPSRVYYASTKEDAALA 110

Query: 113 G 113
           G
Sbjct: 111 G 111


>gi|227431250|ref|ZP_03913304.1| tRNA-adenosine deaminase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227353012|gb|EEJ43184.1| tRNA-adenosine deaminase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 168

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 52/148 (35%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG 64
            FM  AL  ++  +  +     +  +IV +  +I R             HAE+ A+E A 
Sbjct: 14  YFMQEALNEAK--IAQSEGEVPIGAVIVYENQMIARAHNHREADQLATAHAELLAIESAN 71

Query: 65  EEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
            + +         +VTLEPC        CA  II   I  V    +DP    +      L
Sbjct: 72  TKLKSWRLENTALFVTLEPCIM------CAGAIINARIPVVYYGANDPKGGATRSLYSLL 125

Query: 120 SQKGI-----IVDRMMESEGKIFLHAYL 142
               +     + + +   E  + L  + 
Sbjct: 126 EDNRLNHMVKVYEGIRGEESGLLLQRFF 153


>gi|302537575|ref|ZP_07289917.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Streptomyces
           sp. C]
 gi|302446470|gb|EFL18286.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Streptomyces
           sp. C]
          Length = 268

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 67/187 (35%), Gaps = 14/187 (7%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD------ 203
             +   +  + D         S PI+G         LRA +D ++VG  TV  +      
Sbjct: 50  HWLRANMVSTLDG-AAQHDGRSQPISGEADMRIFGTLRALADVVVVGAETVRQEGYRPAR 108

Query: 204 --DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
             +     R    Q  +P   ++     L     +  T+ L P ++VT    P   +A  
Sbjct: 109 AREAFAARRAAAGQGPAPAIAVVTASLDLDFTLPLF-TSPLVPTLVVTGAGAPSDRVAAA 167

Query: 262 KKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
             +   +         D ++ +  L  RG+   L EGG  +   F+ + ++D + L  S 
Sbjct: 168 AASGAEVVVAGEGAGADPERAVRELAARGLRRQLTEGGPRLLGQFVAADVLDELCLTISP 227

Query: 318 IVIGEGG 324
            +   G 
Sbjct: 228 TLTAGGA 234


>gi|163758411|ref|ZP_02165499.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Hoeflea
           phototrophica DFL-43]
 gi|162284700|gb|EDQ34983.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Hoeflea
           phototrophica DFL-43]
          Length = 148

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 51/147 (34%), Gaps = 22/147 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA-- 63
           +M  AL   R           V  +IV DG VI R             HAE+ A+ +A  
Sbjct: 6   YMDLALEEGRQAAER--GEVPVGAVIVLDGEVIARAGNRTRELNDVTAHAEILAIRQAAM 63

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-- 118
               E   GA  YVTLEPC        CA  I    +RR+    DD        G+++  
Sbjct: 64  QLSSERLIGADLYVTLEPC------TMCAAAISFARLRRLYYAADDEKGGAVTSGVRFFD 117

Query: 119 ---LSQKGIIVDRMMESEGKIFLHAYL 142
                    +   +  S+    L  + 
Sbjct: 118 QPTCHHAPDVYPGLAASDAMRLLKDFF 144


>gi|307297235|ref|ZP_07577041.1| CMP/dCMP deaminase zinc-binding [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916495|gb|EFN46877.1| CMP/dCMP deaminase zinc-binding [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 168

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 48/135 (35%), Gaps = 39/135 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC------------ 52
           S+D+ FM  A +           +  V  LIV++  ++  G                   
Sbjct: 25  SWDSYFMRLAYQVRERSSCH---HRKVGALIVRENRILSTGYNQPPSGFPHCDETECIRD 81

Query: 53  ---------------PHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G    G+T YVT  PCS       CA+ II 
Sbjct: 82  ALGIPSGQNQEICYAAHAEQNAIAQAAKFGIATNGSTIYVTHRPCSV------CARLIIN 135

Query: 95  CGIRRVVVCVDDPDV 109
            GI+RVV     PD 
Sbjct: 136 AGIKRVVFSEGYPDP 150


>gi|153808687|ref|ZP_01961355.1| hypothetical protein BACCAC_02986 [Bacteroides caccae ATCC 43185]
 gi|149128513|gb|EDM19731.1| hypothetical protein BACCAC_02986 [Bacteroides caccae ATCC 43185]
          Length = 145

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 50/146 (34%), Gaps = 17/146 (11%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
            D  FM  AL  +            V  ++V    +I R      T      HAE+QA+ 
Sbjct: 3   DDTYFMKQALIEA--GKAAERGEVPVGAVVVCKERIIARAHNLTETLNDVTAHAEMQAIT 60

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A     G+     T YVT+EPC        CA  I      ++V   +D          
Sbjct: 61  AAANVLGGKYLSECTLYVTVEPC------VMCAGAIAWAQTGKLVFGAEDEKRGYQRYAA 114

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYL 142
             L  K ++V  ++  E    +  + 
Sbjct: 115 DALHPKTVVVKGILADECAALMREFF 140


>gi|282878399|ref|ZP_06287187.1| guanine deaminase [Prevotella buccalis ATCC 35310]
 gi|281299477|gb|EFA91858.1| guanine deaminase [Prevotella buccalis ATCC 35310]
          Length = 155

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 38/108 (35%), Gaps = 17/108 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE- 65
           M  A+  S   V  T   P    +I KDG +I          +    HAEV A+ +A   
Sbjct: 7   MRRAIALSEKSV-RTGGGP-FGAVIAKDGEIIAEASNTVTLDHDPTAHAEVNAIRQAAHK 64

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
               +  G   Y + EPC      P C   I    + R+    +  D 
Sbjct: 65  LGTFDLTGCDIYTSCEPC------PMCLGAIYWAHLDRIYYANNRKDA 106


>gi|330893756|gb|EGH26417.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 61

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           +  L  RGV  +LVE G  +A +F    LVD   ++ +   +G    P
Sbjct: 1   MGELATRGVNEVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARP 48


>gi|313115327|ref|ZP_07800802.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622358|gb|EFQ05838.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 159

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 49/145 (33%), Gaps = 34/145 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-------------TAYG 50
           ++D  FM  AL  +         N  V   IV  +  ++  G                  
Sbjct: 8   NWDEYFMGIALLTAMRSK---DPNSQVGACIVSSENKILSLGYNGMPIGCSDDEMPWERE 64

Query: 51  GCP---------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           G P         HAE+ A L  A    +GA  YVTL PC+       C + II+ GI  V
Sbjct: 65  GAPLDTKYMYVCHAELNAILNSAHNNLKGARVYVTLFPCNE------CTKAIIQSGIAEV 118

Query: 101 V-VCVDDPDVRVSGRGLQWLSQKGI 124
           V       D   S        + G+
Sbjct: 119 VYYGDKYHDSDSSVAARFMFKKAGV 143


>gi|229551942|ref|ZP_04440667.1| guanine deaminase [Lactobacillus rhamnosus LMS2-1]
 gi|229314677|gb|EEN80650.1| guanine deaminase [Lactobacillus rhamnosus LMS2-1]
          Length = 167

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 19/141 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG- 64
           FM+ A   ++ +V  +   P   C+IVK+G V+ R        +    H E+ A+ +AG 
Sbjct: 18  FMAMADEEAKANVNGSDGGP-FGCVIVKNGQVVSRAHNRVLVDHDPTAHGEITAIRKAGQ 76

Query: 65  ----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV---RVSGRGLQ 117
                +  G   Y +  PC      P C   II   I++V       D          + 
Sbjct: 77  ALGTHDLSGCELYTSAMPC------PMCLSAIIWANIKQVYYGNTADDAAAIGFRDAAIY 130

Query: 118 WLSQKGIIVDRMMESEGKIFL 138
                G+  + +  S+    L
Sbjct: 131 DFINAGLKGEMLKLSQHDRNL 151


>gi|319956637|ref|YP_004167900.1| cmp/dcmp deaminase zinc-binding protein [Nitratifractor salsuginis
           DSM 16511]
 gi|319419041|gb|ADV46151.1| CMP/dCMP deaminase zinc-binding protein [Nitratifractor salsuginis
           DSM 16511]
          Length = 155

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 16/111 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             ++  A+  +R  V      P    +IV  G ++               HAE+ A+  A
Sbjct: 4   EEYLQIAIGEARKGVEAGHGGP-FGAVIVYRGEIVSTAHNEVVLRNDPTAHAEILAIRLA 62

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           GE+ +     G T Y T EPC      P C   I    + RV+ C    + 
Sbjct: 63  GEKLQRFHLNGCTLYCTGEPC------PMCFSAIHWAHLDRVIYCNTKEEA 107


>gi|329957030|ref|ZP_08297598.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides clarus YIT 12056]
 gi|328523787|gb|EGF50879.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides clarus YIT 12056]
          Length = 145

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 56/154 (36%), Gaps = 38/154 (24%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
              + D R++  A  ++            V  LIVKD ++I  G     G P        
Sbjct: 8   KQEALDKRYIRMASIWAENSYCQRR---QVGALIVKDKMIISDGY---NGTPSGFENVCE 61

Query: 54  -----------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                      HAE  A   +  +   + GAT YVT  PC        CA+ II+ GI+R
Sbjct: 62  DENNVTKPYVLHAEANAITKIARSNNSSNGATMYVTASPCIE------CAKLIIQAGIKR 115

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
           VV             G++ L + GI V  +    
Sbjct: 116 VVYSEKYRL----EDGIELLKRAGIEVIFVSAEH 145


>gi|113816713|gb|AAH37955.2| ADAT2 protein [Homo sapiens]
          Length = 193

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 23/126 (18%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
            ++M  A+  ++  +  T     V CL+V +  V+G+G            HAE+ A+++ 
Sbjct: 25  EKWMEEAMHMAKEALENTE--VPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQV 82

Query: 64  GEEARGA-----------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            +  R +             YVT+EPC        CA  +    I  VV    +      
Sbjct: 83  LDWCRQSGKSPSEVFEHTVLYVTVEPCIM------CAAALRLMKIPLVVYGCQNERFGGC 136

Query: 113 GRGLQW 118
           G  L  
Sbjct: 137 GSVLNI 142


>gi|313108829|ref|ZP_07794814.1| putative dihydrofolate reductase [Pseudomonas aeruginosa 39016]
 gi|310881316|gb|EFQ39910.1| putative dihydrofolate reductase [Pseudomonas aeruginosa 39016]
          Length = 180

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 68/205 (33%), Gaps = 43/205 (20%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS---DAILVGIGTVLADDPE 206
            H+T  +A S D  I         +  F      H  ++     D +L+G GT       
Sbjct: 3   PHLTYYVAASLDGFIARPDGSVDWLDRFAEGGNDHGYKSFYQGIDGLLMGRGT------- 55

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
                           I+          K        P  ++T N     A     +++ 
Sbjct: 56  --------------YDIVRGFGDWPYSGK--------PCQVLTRNPQESAAEGVELRHVT 93

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
                    ++ L  L  +G   + + GG ++A S + + L+D +I+     ++G G   
Sbjct: 94  --------PQEGLARLGEQGCRRIWLAGGGSLAGSCLAAGLLDEVIVSVIPQLLGAG--- 142

Query: 327 SPLEEGYLEKNFMCVRRDYFGSDVC 351
            PL  G  E+    + +  + S + 
Sbjct: 143 IPLFAGGRERRLQLLEQHGYNSGIV 167


>gi|145580452|pdb|2P4G|A Chain A, Crystal Structure Of A Pyrimidine Reductase-Like Protein
           (Dip1392) From Corynebacterium Diphtheriae Nctc At 2.30
           A Resolution
          Length = 270

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 71/211 (33%), Gaps = 21/211 (9%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
                      S +         S P       + +  LR  +DAI+VG  T   ++   
Sbjct: 32  NEPECRAIAITSING-SATLSGVSGPXGDQTDADLLIQLRGWADAIVVGAETARKENYGP 90

Query: 208 TCRLNGLQ-EHS-------PMRIILDPHFKLSLDSKIIKTAL---LAPVIIVTENDDPVL 256
               +G++ +         P   +L         S++    L   L+P++I  +  +   
Sbjct: 91  VVLPHGIKNQRQKLGRCGLPKLTLLSKSLYFDFSSELFSPDLPSELSPLVITQQPANNSE 150

Query: 257 ALAFR-----KKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
               R        + +I        LK     L  R +  + +EGG +V    ++  +VD
Sbjct: 151 QWDQRLQKLIDVGVEVIVAPTSTNPLKIAFDALHARRLKKISIEGGPSVYRQALSLGIVD 210

Query: 310 SIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
            + L  +  +I    + SPL     + +F  
Sbjct: 211 RLHLTIAPNII--CPVESPLFGKISDDSFTT 239


>gi|313157603|gb|EFR57018.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Alistipes sp. HGB5]
          Length = 145

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 57/148 (38%), Gaps = 32/148 (21%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----------------TAY 49
            D R++  A  ++     +      V  LIVKD ++I  G                    
Sbjct: 11  LDIRYLRMARIWAENSYCVRRK---VGALIVKDKMIISDGYNGTPSGFENICEDENGHTK 67

Query: 50  GGCPHAEVQALEEAGEEAR---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               HAE  A+ +  + A    G+T Y+T  PC        C++ II+ GI+RVV C + 
Sbjct: 68  PYVLHAEANAITKVAKSANNCDGSTLYITAAPCIE------CSKLIIQAGIKRVVYCEEY 121

Query: 107 PDVRVSGRGLQWLSQKGIIVDRMMESEG 134
                S  GL  L + GI   +    + 
Sbjct: 122 R----SEEGLNLLRKVGIECVQHAMEDC 145


>gi|283779562|ref|YP_003370317.1| CMP/dCMP deaminase zinc-binding protein [Pirellula staleyi DSM
           6068]
 gi|283438015|gb|ADB16457.1| CMP/dCMP deaminase zinc-binding protein [Pirellula staleyi DSM
           6068]
          Length = 160

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           M    +D  F+ AA+  +R +V      P    ++VK+G +IGRG            HAE
Sbjct: 1   MTSPHYDHEFLEAAIELARENVRSGKGGP-FGSVVVKEGKIIGRGENRVTSSLDPSAHAE 59

Query: 57  VQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           + A+ +A ++       G T Y + +PC      P C   I    I RVV 
Sbjct: 60  IVAIRDACQQQQNFSLAGTTIYASCQPC------PMCLSAIYWSRIDRVVF 104


>gi|91206241|ref|YP_538596.1| cytosine deaminase [Rickettsia bellii RML369-C]
 gi|157827858|ref|YP_001496922.1| cytosine deaminase [Rickettsia bellii OSU 85-389]
 gi|91069785|gb|ABE05507.1| Cytosine deaminase [Rickettsia bellii RML369-C]
 gi|157803162|gb|ABV79885.1| Cytosine deaminase [Rickettsia bellii OSU 85-389]
          Length = 152

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 21/130 (16%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTN-PSVACLIVK--DGIVIGRGVT----AYGGCPHAEV 57
           +FD  FM  AL+ +       S N   V  +IV   +  +I +             HAE+
Sbjct: 2   NFDNFFMREALKQAEIAF---SKNEVPVGAVIVDRENQKIISKSYNNTEEKNNALYHAEI 58

Query: 58  QALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+ EA      +       YVTLEPC+       CA  I    ++R+     D      
Sbjct: 59  IAINEACRIISSKNLSDYDIYVTLEPCAM------CAAAIAHSRLKRLFYGASDSKHGAV 112

Query: 113 GRGLQWLSQK 122
              L++ + K
Sbjct: 113 ESNLRYFNSK 122


>gi|218129661|ref|ZP_03458465.1| hypothetical protein BACEGG_01240 [Bacteroides eggerthii DSM 20697]
 gi|317477506|ref|ZP_07936731.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides eggerthii 1_2_48FAA]
 gi|217988391|gb|EEC54714.1| hypothetical protein BACEGG_01240 [Bacteroides eggerthii DSM 20697]
 gi|316906307|gb|EFV28036.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides eggerthii 1_2_48FAA]
          Length = 145

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 55/150 (36%), Gaps = 38/150 (25%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
              + D R++  A  ++            V  LIVKD ++I  G     G P        
Sbjct: 8   KQEALDKRYIRMASIWAENSYCQRR---QVGALIVKDKMIISDGY---NGTPSGFENVCE 61

Query: 54  -----------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                      HAE  A   +  +   + GAT YVT  PC        CA+ II+ GI+R
Sbjct: 62  DENNITKPYVLHAEANAITKIARSNNSSNGATMYVTASPCIE------CAKLIIQAGIKR 115

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           VV             G+  L + GI V  +
Sbjct: 116 VVYSEKYRL----EDGINLLKRAGIEVVFV 141


>gi|18310048|ref|NP_561982.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens str. 13]
 gi|18144727|dbj|BAB80772.1| deoxycytidylate deaminase [Clostridium perfringens str. 13]
          Length = 166

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 59/161 (36%), Gaps = 33/161 (20%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
           S+D  FM  AL  ++        N  V   IV  D  ++G G                  
Sbjct: 10  SWDEYFMGVALISAKRSK---DPNTQVGACIVDNDNKIVGIGYNGFPKGCSDDDLPWGNK 66

Query: 47  -----TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                T Y    HAE+ A L   G+  +    Y TL PC+       CA+ II+ GI  V
Sbjct: 67  GDFLETKYPYACHAELNAILNSTGKNVKNCRVYATLFPCNE------CAKAIIQAGITEV 120

Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
           +   D        +  +++  K  +  R + S+    L ++
Sbjct: 121 IYLSDKYKDTDIVKASKFMFDKANVKYRYLGSDRDNLLISF 161


>gi|296111508|ref|YP_003621890.1| hypothetical protein LKI_06910 [Leuconostoc kimchii IMSNU 11154]
 gi|295833040|gb|ADG40921.1| hypothetical protein LKI_06910 [Leuconostoc kimchii IMSNU 11154]
          Length = 164

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 40/122 (32%), Gaps = 17/122 (13%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGG---CPHAEVQALEEAG 64
            FM  AL  ++      +    +  +IVKD  +I R             HAE+ A+E A 
Sbjct: 14  YFMQVALNEAQLA--DEAGEVPIGAVIVKDNEIIARAHNHREAHQLATAHAELVAIESAN 71

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                        +VTLEPC        CA  II   I  V     D     +      L
Sbjct: 72  HILNSWRLENTALFVTLEPCIM------CAGAIINARIPTVYFGAADSKGGGTRSLYHLL 125

Query: 120 SQ 121
             
Sbjct: 126 ED 127


>gi|62327216|ref|YP_223954.1| deoxycytidylate deaminase [Phage phiJL001]
 gi|50059534|gb|AAT69506.1| deoxycytidylate deaminase [Phage phiJL001]
          Length = 244

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 29/143 (20%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPS--VACLIVK-DGIVIGRGV------------------ 46
           A++    L+ + +   L S +PS  V  ++V  D  V+G G                   
Sbjct: 104 AKWDRDYLKLAEFWANLKSKDPSTKVGAVVVSEDNRVVGMGYNGFPVGVEDSRERLEDRP 163

Query: 47  TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV--VCV 104
           T Y    HAE  A+  AG +A+G T Y TL PC+       CA+ II+ GIRRVV     
Sbjct: 164 TKYMYVVHAEPNAILTAGLQAKGGTLYCTLFPCNE------CAKLIIQSGIRRVVSWASD 217

Query: 105 DDPDVRVSGRGLQWLSQKGIIVD 127
           +               + G+  +
Sbjct: 218 NQRWDEAHQVSRIMFDEAGVANE 240


>gi|227824625|ref|ZP_03989457.1| CMP/dCMP deaminase [Acidaminococcus sp. D21]
 gi|226905124|gb|EEH91042.1| CMP/dCMP deaminase [Acidaminococcus sp. D21]
          Length = 153

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 49/129 (37%), Gaps = 20/129 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
            V  ++V+DG VI R             HAE+  + EA E+ R      +T YVT+EPC 
Sbjct: 29  PVGAILVQDGRVIARNHNRRERAHDATAHAEILVIREACEKLRRWRLADSTLYVTMEPC- 87

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGK 135
                P CA  I    I RVV    D      G   Q      L    II   +     K
Sbjct: 88  -----PMCAGAIYNARIGRVVFGASDSVAGACGSLFQIPLHPSLHANTIIKAGIEAERCK 142

Query: 136 IFLHAYLTR 144
             L  + TR
Sbjct: 143 KILQEFFTR 151


>gi|256420111|ref|YP_003120764.1| CMP/dCMP deaminase zinc-binding [Chitinophaga pinensis DSM 2588]
 gi|256035019|gb|ACU58563.1| CMP/dCMP deaminase zinc-binding [Chitinophaga pinensis DSM 2588]
          Length = 146

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 43/112 (38%), Gaps = 17/112 (15%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
            D  +M  ALR +R      +    V  ++V    +IG+G            HAE+ AL 
Sbjct: 2   DDKYYMQQALREARKA--FDAGEVPVGAIVVLSDKIIGKGSNQVEMLNDCTAHAEMLALT 59

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            A      +    AT YVTLEPC        CA  +    I R+V    D  
Sbjct: 60  AAFNYLGSKYLMEATLYVTLEPCLM------CAGALYWSKIGRIVYAAKDEK 105


>gi|88807138|ref|ZP_01122650.1| RibD/ribG C-terminal domain [Synechococcus sp. WH 7805]
 gi|88788352|gb|EAR19507.1| RibD/ribG C-terminal domain [Synechococcus sp. WH 7805]
          Length = 228

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 72/228 (31%), Gaps = 25/228 (10%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE----- 206
           + L +AVS D  +     G   + G   +  +    A SD  L+G GT+ A         
Sbjct: 7   VRLVLAVSLDGRLAYPQGGPSQLGGAGDRKALEEALAWSDGALIGAGTLRAHRSSCLIHA 66

Query: 207 ---LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
              L  R    +   P   ++       L     +        ++T             K
Sbjct: 67  HDLLEQRQAACRSPQPDLFVVSRQADFPLHWPFFQQPFAR--YLLTPG-------GGGAK 117

Query: 264 NINIIYCDCRDLKKLLTILVGRGVTS-LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
             N  Y       + L  L  RG +  +L+ GGA +  S +    VD + L     ++G 
Sbjct: 118 GFNDGYPLAASWTESLASLAARGWSKFVLL-GGAGLCESMLADDAVDELQLTLCPRLLGG 176

Query: 323 ------GGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQEL 364
                    P+  E       ++       G    L +  +N  ++ L
Sbjct: 177 PFCWVPSLAPALPENLAAADAWLLEHSQPLGGGELLVHYRRNRSIRSL 224


>gi|86134359|ref|ZP_01052941.1| cytidine and deoxycytidylate deaminase [Polaribacter sp. MED152]
 gi|85821222|gb|EAQ42369.1| cytidine and deoxycytidylate deaminase [Polaribacter sp. MED152]
          Length = 149

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 55/146 (37%), Gaps = 18/146 (12%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
            D  FM  A + +   +        V  +IV +  +I R      T      HAE+QA  
Sbjct: 6   DDTYFMKKAYQEAE--IAFDKGEIPVGAVIVLNNQIIARAHNLTETLNDVTAHAEMQAFT 63

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A     G+  +    YVTLEPC     +   +Q      I+R+V    +P       G 
Sbjct: 64  AAANFLGGKYLKDCILYVTLEPCQMCAGASYWSQ------IQRIVYGASEPKRGFVNLG- 116

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYL 142
             L  K  +   ++E++  + L  + 
Sbjct: 117 TQLHPKTKVTSGVLENDCSLLLKRFF 142


>gi|254412813|ref|ZP_05026586.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196180548|gb|EDX75539.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 186

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 23/150 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEE 62
             +M+ +L  ++   G     P V  +I+ +   +I  G            HAE+ AL  
Sbjct: 14  RHWMNRSLAIAQSA-GEAGEVP-VGAVIIDNQDNLIATGENRRERDRDPTAHAEILALRA 71

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AG+          T YVTLEPC+       C+  II   +  +V   DDP          
Sbjct: 72  AGQALNTWHLNTCTLYVTLEPCAM------CSGAIILARLGLLVYGADDPKTGTIRTVAN 125

Query: 118 -----WLSQKGIIVDRMMESEGKIFLHAYL 142
                + + +  ++  +ME+E + +L ++ 
Sbjct: 126 SPDSAYSNHRLPVLAGIMETECREYLKSWF 155


>gi|88801642|ref|ZP_01117170.1| putative cytosine/adenosine deaminase [Polaribacter irgensii 23-P]
 gi|88782300|gb|EAR13477.1| putative cytosine/adenosine deaminase [Polaribacter irgensii 23-P]
          Length = 149

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 53/151 (35%), Gaps = 18/151 (11%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M     D  FM  A + +            V  +IV    +I R      T      HAE
Sbjct: 1   MIQPFDDIYFMKKAFQEAENA--FDKGEIPVGAVIVLKDQIIARAHNLTETLNDVTAHAE 58

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +QA   A     G+  +    YVTLEPC     +   AQ      I ++V    +P+   
Sbjct: 59  MQAFTSAADFLGGKYLKECVLYVTLEPCQMCAGASYWAQ------IGKIVYGASEPERGF 112

Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
                  L  K  ++  ++E+E    L  + 
Sbjct: 113 KNLQ-TTLHPKTKVIGGILENECSQILKRFF 142


>gi|228476125|ref|ZP_04060833.1| ComE operon protein 2 [Staphylococcus hominis SK119]
 gi|314936291|ref|ZP_07843638.1| ComE operon protein 2 [Staphylococcus hominis subsp. hominis C80]
 gi|228269948|gb|EEK11428.1| ComE operon protein 2 [Staphylococcus hominis SK119]
 gi|313654910|gb|EFS18655.1| ComE operon protein 2 [Staphylococcus hominis subsp. hominis C80]
          Length = 154

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 56/149 (37%), Gaps = 34/149 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M    +D  FM+ +   +           SV   IVKD  +I  G               
Sbjct: 1   MDRIKWDEYFMAQSHLLALRSTCQRL---SVGATIVKDNRIIAGGYNGSVAGEVHCIDVG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G  +  AT YVT  PC +      C + II+ GI+
Sbjct: 58  CLIEDDHCIRTIHAEMNALLQCAKQGVSSDNATIYVTHFPCLN------CTKSIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           ++    D  + + +   ++ L+Q GI  +
Sbjct: 112 KIYYAKDYHNHKYA---IKLLNQAGIEYE 137


>gi|29830723|ref|NP_825357.1| cytidine/deoxycytidine deaminase [Streptomyces avermitilis MA-4680]
 gi|29607836|dbj|BAC71892.1| putative cytidine/deoxycytidine deaminase [Streptomyces avermitilis
           MA-4680]
          Length = 142

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 53/147 (36%), Gaps = 23/147 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG----CPHAEVQALEEAGE 65
           M  AL  +            V  +++  DG VI RG            HAEV A+  A E
Sbjct: 1   MRLALTEAVRAAESADV--PVGAVVLAPDGSVIARGHNEREATGDPTAHAEVLAVRRAAE 58

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ--- 117
                   G T  VTLEPC        CA  +++  + RVV    D     +G       
Sbjct: 59  RLGRWRLSGCTLVVTLEPC------TMCAGALVQSRVDRVVYGARDEKAGAAGSLWDVVR 112

Query: 118 --WLSQKGIIVDRMMESEGKIFLHAYL 142
              L+ +  +++ ++  E    L  + 
Sbjct: 113 DRRLNHRPEVIEGVLADECAGLLTEFF 139


>gi|300775315|ref|ZP_07085177.1| competence protein ComEB [Chryseobacterium gleum ATCC 35910]
 gi|300506055|gb|EFK37191.1| competence protein ComEB [Chryseobacterium gleum ATCC 35910]
          Length = 140

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 38/153 (24%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------- 53
           ++ FD  ++  A  +++           V  LIVKD ++I  G     G P         
Sbjct: 1   MNKFDKAYLKMAQEWAKLSYCKRK---QVGALIVKDRMIISDGY---NGTPSGFENCCED 54

Query: 54  ----------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                     HAE  A   L  + + A+GAT Y+TL PC        C++ I++ GI R+
Sbjct: 55  EEGKTHWYVLHAEANAILKLAASTQSAKGATLYLTLSPCKE------CSKLILQAGITRL 108

Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
           V   +  D      G+ +L    I ++++ + E
Sbjct: 109 VYINEYSD----DDGISFLRNHNIEIEQISDCE 137


>gi|148253230|ref|YP_001237815.1| tRNA-adenosine deaminase [Bradyrhizobium sp. BTAi1]
 gi|146405403|gb|ABQ33909.1| tRNA-adenosine deaminase [Bradyrhizobium sp. BTAi1]
          Length = 148

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 47/121 (38%), Gaps = 17/121 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA-- 63
           FM  AL+ +       S    + C++V+D  VI        T      HAE+ AL +A  
Sbjct: 6   FMDLALKAAESAA--ISGEVPIGCVVVRDNAVIATAANRTLTDRDPTAHAEILALRQAAQ 63

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
               E       YVTLEPC        CA  I    IRR+     DP       G+++ +
Sbjct: 64  VIGSERLVDCDLYVTLEPC------TMCAGAISFARIRRLYYGAADPKGGAVESGVRFFA 117

Query: 121 Q 121
            
Sbjct: 118 A 118


>gi|255261482|ref|ZP_05340824.1| tRNA-specific adenosine deaminase [Thalassiobium sp. R2A62]
 gi|255103817|gb|EET46491.1| tRNA-specific adenosine deaminase [Thalassiobium sp. R2A62]
          Length = 147

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/110 (33%), Positives = 43/110 (39%), Gaps = 17/110 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEA-- 63
           FM  AL  +R   G     P V  ++V DG V+     R         HAEV A+ EA  
Sbjct: 5   FMDQALEQARLA-GARGEVP-VGAVVVADGKVVAAQGNRTRERNDPTAHAEVLAIREACA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
               E   G   YVTLEPC      P CA  I    I R+     DP   
Sbjct: 63  AAGSERLVGHDLYVTLEPC------PMCATVISNARIARLYYGAGDPKSG 106


>gi|149248448|ref|XP_001528611.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146448565|gb|EDK42953.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 271

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 66/179 (36%), Gaps = 20/179 (11%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57
           P  S   +FM+ AL      +    T   VAC++ +   +I  G         G  HAE 
Sbjct: 3   PDLSQHFKFMAVALFVGYKALLKNET--PVACVVTRGCQIISIGYNHTNITLNGTKHAEF 60

Query: 58  QALEEAGE--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            AL    E  + +  T YVT+EPC        CA ++ + G++ V+    +     +G  
Sbjct: 61  IALGRLKEPVDYKNLTLYVTVEPCIM------CASYLRQLGLKNVIYGCGNDRFGGAGTI 114

Query: 116 LQWLSQKG------IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG 168
           L   +           +D +  +E    L  +  ++ E      LK     D+ +    
Sbjct: 115 LPLHNDPKLPHKPLTCIDGICRTEAIQLLRNFYIQENESAPTPKLKKNKDIDDKVFPPN 173


>gi|115388491|ref|XP_001211751.1| cytosine deaminase [Aspergillus terreus NIH2624]
 gi|114195835|gb|EAU37535.1| cytosine deaminase [Aspergillus terreus NIH2624]
          Length = 148

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 56/146 (38%), Gaps = 21/146 (14%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCPHAEVQALEEAGEEA 67
           AA+  ++           +   +V KDG ++GRG            HAE+ ALE +G   
Sbjct: 9   AAVEEAKKGAAEGGV--PIGAALVSKDGKILGRGHNMRVQKGSATLHAEMAALENSGRLP 66

Query: 68  ----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
                GAT Y TL PC        C    I   I RVV+  +   +       + L  KG
Sbjct: 67  ASAYAGATMYTTLSPCDM------CTGACILYKINRVVIGENQNFLGGE----ELLLNKG 116

Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKR 149
             V  +  +E K  +  ++  + E  
Sbjct: 117 KEVVVLDHAECKQLMETFIKEKPELW 142


>gi|170106123|ref|XP_001884273.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164640619|gb|EDR04883.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 183

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 23/129 (17%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           + S   R+M  AL  +   +  +     V C+ V+DGI+I +             HAE++
Sbjct: 1   MDSIHDRWMREALTMAEEALAASEV--PVGCVFVRDGIIIAKARNRTNELCNATRHAELE 58

Query: 59  ALEEAGEE-----------ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           A++    +               T YVT+EPC        CA  + + GI+ V     + 
Sbjct: 59  AIDSIMADRSLTPEISEYPLSNTTLYVTVEPCIM------CASALRQMGIKEVFYGCAND 112

Query: 108 DVRVSGRGL 116
                G  L
Sbjct: 113 RFGGCGSVL 121


>gi|182416349|ref|YP_001821415.1| CMP/dCMP deaminase zinc-binding [Opitutus terrae PB90-1]
 gi|177843563|gb|ACB77815.1| CMP/dCMP deaminase zinc-binding [Opitutus terrae PB90-1]
          Length = 183

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 38/111 (34%), Gaps = 16/111 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             +M  A++ +   +      P   C+IV+ G ++ RG            HAEV A+ EA
Sbjct: 31  ETYMREAIQLADDGMRADRGGP-FGCVIVRRGEIVARGQNRVTSTNDPTAHAEVTAIREA 89

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
            +            Y + EPC      P C   I    I  V       D 
Sbjct: 90  AQRLGTFQLGDCELYTSCEPC------PMCLSAIYWARIPTVYYANTRKDA 134


>gi|258509262|ref|YP_003172013.1| CMP/dCMP deaminase [Lactobacillus rhamnosus GG]
 gi|257149189|emb|CAR88162.1| CMP/dCMP deaminase, zinc-binding [Lactobacillus rhamnosus GG]
          Length = 168

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 15/101 (14%)

Query: 30  SVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            +  ++V D  +IGRG     T      HAE+ A++ A            + +VTLEPC 
Sbjct: 27  PIGAVVVHDQQIIGRGYNLRETTQDATQHAEILAIQAACRQLGTWRLEDCSLFVTLEPC- 85

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                P CA  +I   I        DP   V+G     L  
Sbjct: 86  -----PMCAGTMINARIATCYFGATDPKAGVAGTFYNLLED 121


>gi|256820204|ref|YP_003141483.1| CMP/dCMP deaminase zinc-binding [Capnocytophaga ochracea DSM 7271]
 gi|256581787|gb|ACU92922.1| CMP/dCMP deaminase zinc-binding [Capnocytophaga ochracea DSM 7271]
          Length = 146

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 59/146 (40%), Gaps = 38/146 (26%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
           +D  +M  A+ +++           V  +IVKD ++I  G     G P            
Sbjct: 12  YDKAYMCMAMEWAKLSYSQRK---QVGAIIVKDRMIISDGY---NGTPTGFDNCCEDEEG 65

Query: 54  -------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A+     + + + GAT Y+T+ PC        C++ I + GI+RVV  
Sbjct: 66  NTHWYVLHAEANAIMKVASSTQSSEGATLYITMSPCKE------CSKLIYQSGIKRVVYK 119

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRM 129
               D      GL +L + G+ V  +
Sbjct: 120 EGYRD----NEGLAFLEKAGVEVVHL 141


>gi|119509443|ref|ZP_01628591.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Nodularia
           spumigena CCY9414]
 gi|119465849|gb|EAW46738.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Nodularia
           spumigena CCY9414]
          Length = 150

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 45/118 (38%), Gaps = 18/118 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           MS AL  ++   G     P V  +I+   G +I  G            HAE+ AL  A  
Sbjct: 1   MSRALDLAQIA-GDAGEVP-VGAVIIDAGGNMIAEGENRKERDQDPTAHAEIIALRAAAN 58

Query: 66  EARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                     T YVTLEPC      P CA  I++  ++++V  VDD            
Sbjct: 59  SLHNWRLNQCTLYVTLEPC------PMCAGAIVQARLQQLVYGVDDTKTGAIRTVTNI 110


>gi|320108633|ref|YP_004184223.1| Guanine deaminase [Terriglobus saanensis SP1PR4]
 gi|319927154|gb|ADV84229.1| Guanine deaminase [Terriglobus saanensis SP1PR4]
          Length = 161

 Score = 68.4 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 50/131 (38%), Gaps = 17/131 (12%)

Query: 1   MPVSS-FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
           MP+S+   A+FM  A+R +  +V      P   C+IV+DG VI     +         HA
Sbjct: 1   MPISNTQHAQFMQQAIRLATENVTSGRGGP-FGCVIVRDGEVIAARANSVTATNDPTAHA 59

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           EV A+  A       +  G   Y + EPC      P C   I     R +       D  
Sbjct: 60  EVNAIRAACAALGTFQLTGCDVYTSCEPC------PMCLAAIYWARCRSIYFGNTAQDAA 113

Query: 111 VSGRGLQWLSQ 121
            +G    +L  
Sbjct: 114 EAGFDDSFLYA 124


>gi|269129124|ref|YP_003302494.1| CMP/dCMP deaminase zinc-binding protein [Thermomonospora curvata
           DSM 43183]
 gi|268314082|gb|ACZ00457.1| CMP/dCMP deaminase zinc-binding protein [Thermomonospora curvata
           DSM 43183]
          Length = 168

 Score = 68.4 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 52/149 (34%), Gaps = 23/149 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           M  AL  +R  +   S +  V  +I+   G VI  G            HAEV AL  A  
Sbjct: 24  MRLALDQARLAM--ESGDVPVGAVILDSGGRVIATGRNEREQTADPTAHAEVVALRSAAA 81

Query: 66  EA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ--- 117
                   G T  VTLEPC        CA   +   + R+V    DP     G       
Sbjct: 82  RLGSWRLEGCTLVVTLEPC------TMCAGAAVLARVDRIVYGAVDPKAGAVGSLWDVVR 135

Query: 118 --WLSQKGIIVDRMMESEGKIFLHAYLTR 144
              L+ +  ++  ++  E    L  +  R
Sbjct: 136 DRRLNHRPEVIAEVLADECGAVLTEFFAR 164


>gi|148241392|ref|YP_001226549.1| pyrimidine reductase, riboflavin biosynthesis [Synechococcus sp.
           RCC307]
 gi|147849702|emb|CAK27196.1| Pyrimidine reductase, riboflavin biosynthesis [Synechococcus sp.
           RCC307]
          Length = 216

 Score = 68.4 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 73/215 (33%), Gaps = 15/215 (6%)

Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN 212
            L +AVS D  +     G+  + G   +  +    A +D  +VG GTV A          
Sbjct: 4   RLVLAVSLDGRLAPPAGGAAQLGGAGDRCVLEEALAWADVAVVGAGTVRAHGCSCLIHRP 63

Query: 213 GLQE---------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
            LQ+           P+  ++       +           P+ +   +  P+LA      
Sbjct: 64  ELQQQRQSRGQSLQPPL--LIASRQATPVGFDPAWRLWGQPLQLWWLSSAPLLAAPPAG- 120

Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
                       + LL  L   G   +L+ GGA +A + +   LVD + L    +V+G  
Sbjct: 121 --FARQLALESWQGLLAQLNAEGHQRVLLLGGAQLAGALLQEDLVDELQLTICPLVLGGE 178

Query: 324 GIPSPLEEGYLEKNFMCVRRDYFGS-DVCLEYIGK 357
               P         ++   +   G  +V L Y  K
Sbjct: 179 HSWLPPSAQPQADRWLLQEQRSLGDGEVLLRYQRK 213


>gi|194334351|ref|YP_002016211.1| CMP/dCMP deaminase [Prosthecochloris aestuarii DSM 271]
 gi|194312169|gb|ACF46564.1| CMP/dCMP deaminase zinc-binding [Prosthecochloris aestuarii DSM
           271]
          Length = 155

 Score = 68.4 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 17/125 (13%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
            ++RF+  AL  +  +V           LIV++G V+  GV           HAEV A+ 
Sbjct: 2   MESRFLDRALALAVENVAAGGG--PFGALIVRNGEVVATGVNRVTRENDPTSHAEVNAIR 59

Query: 62  EAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A ++ +     G   Y + EPC      P C   I   G+  V    D  +  V+G   
Sbjct: 60  AASQKLKTFKLEGCELYSSCEPC------PMCMGAIYWAGVTTVYYGADSDEAAVAGFDD 113

Query: 117 QWLSQ 121
           +++  
Sbjct: 114 RYIYD 118


>gi|297679305|ref|XP_002817478.1| PREDICTED: tRNA-specific adenosine deaminase 2-like [Pongo abelii]
          Length = 191

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 45/126 (35%), Gaps = 23/126 (18%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
            ++M  A+  ++  +  T     V CL+V +  V+G+G            HAE+ A+++ 
Sbjct: 23  EKWMEEAMHMAKEALENTEV--PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQV 80

Query: 64  -----------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
                       E       YVT+EPC        CA  +    I  VV    +      
Sbjct: 81  LDWCLQSGKSPSEVFEHTVLYVTVEPCIM------CAAALRLMKIPLVVYGCQNERFGGC 134

Query: 113 GRGLQW 118
           G  L  
Sbjct: 135 GSVLNI 140


>gi|237714907|ref|ZP_04545388.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262406825|ref|ZP_06083374.1| ComE operon protein 2 [Bacteroides sp. 2_1_22]
 gi|298483658|ref|ZP_07001833.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
           D22]
 gi|229445232|gb|EEO51023.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355528|gb|EEZ04619.1| ComE operon protein 2 [Bacteroides sp. 2_1_22]
 gi|295084706|emb|CBK66229.1| Cytosine/adenosine deaminases [Bacteroides xylanisolvens XB1A]
 gi|298270228|gb|EFI11814.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
           D22]
          Length = 145

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 50/146 (34%), Gaps = 17/146 (11%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
            D  FM  AL  +            V  ++V    +I R      T      HAE+QA+ 
Sbjct: 3   DDIYFMKQALIEA--GKAAERGEVPVGAVVVCKERIIARAHNLTETLNDVTAHAEMQAIT 60

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A     G+     T YVT+EPC        CA  I      ++V   +D          
Sbjct: 61  AAANVLGGKYLNECTLYVTVEPC------VMCAGAIAWAQTGKLVFGAEDEKRGYQKYAG 114

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYL 142
             L  K ++V  +M  E    +  + 
Sbjct: 115 SALHPKTVVVKGIMADECAALMKEFF 140


>gi|199598355|ref|ZP_03211775.1| Cytosine/adenosine deaminase [Lactobacillus rhamnosus HN001]
 gi|199590808|gb|EDY98894.1| Cytosine/adenosine deaminase [Lactobacillus rhamnosus HN001]
          Length = 155

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 53/141 (37%), Gaps = 19/141 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG- 64
           FM+ A   ++ +V  +   P   C+IVK+G VI R        +    H E+ A+ +AG 
Sbjct: 6   FMAMADEEAKANVNGSDGGP-FGCVIVKNGQVISRAHNQVLVDHDPTAHGEITAIRKAGQ 64

Query: 65  ----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV---RVSGRGLQ 117
                +  G   Y +  PC      P C   II   I++V       D          + 
Sbjct: 65  ALGTHDLSGCELYTSAMPC------PMCLSAIIWANIKQVYYGNTADDAAAIGFRDAAIY 118

Query: 118 WLSQKGIIVDRMMESEGKIFL 138
                G+  D ++ S+    L
Sbjct: 119 DFINAGLKGDMLVLSQHDREL 139


>gi|163786644|ref|ZP_02181092.1| deoxycytidylate deaminase [Flavobacteriales bacterium ALC-1]
 gi|159878504|gb|EDP72560.1| deoxycytidylate deaminase [Flavobacteriales bacterium ALC-1]
          Length = 143

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 62/152 (40%), Gaps = 37/152 (24%)

Query: 1   MPVSSFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------ 53
           MP      R+  A LR ++ W          V  LIVKD ++I  G     G P      
Sbjct: 1   MPNKKQ-LRYDKAYLRIAKEWGKLSHCKRKQVGALIVKDRMIISDGY---NGTPTGFENY 56

Query: 54  -------------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                        HAE  A+     + +  +GAT Y+TL PC        C++ I + GI
Sbjct: 57  CEDDEGYTKWYVLHAEANAILKVASSTQSCKGATLYITLSPCKE------CSKLIHQAGI 110

Query: 98  RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            RVV      D      GLQ+L++ GI ++ +
Sbjct: 111 IRVVYQNGYKD----DSGLQFLAKAGIELEHI 138


>gi|85014509|ref|XP_955750.1| deoxycytidylate deaminase [Encephalitozoon cuniculi GB-M1]
 gi|19171444|emb|CAD27169.1| BELONGS TO THE CYTIDINE AND DEOXYCYTIDYLATE DEAMINASE FAMILY
           [Encephalitozoon cuniculi GB-M1]
          Length = 150

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 55/160 (34%), Gaps = 19/160 (11%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQA 59
           S+  + FM  A++ +          P V C++V++GIV+ +             HAEV +
Sbjct: 5   STTHSFFMEMAVKEAMRA-FDALEVP-VGCVVVRNGIVVSKSHNMTNANKSPLDHAEVIS 62

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           + +A  +   +T YVT EPC        C   +       V     +             
Sbjct: 63  IRDA--DCSNSTFYVTCEPCIM------CMGILGRLKGVEVYYGCRNEVFGSETVC---- 110

Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
              GI    + +S     L  + TR+         K+   
Sbjct: 111 -GIGIKSTYLPDSRCFEILQRFYTRENVFAPDERRKLKNH 149


>gi|220925961|ref|YP_002501263.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Methylobacterium nodulans ORS 2060]
 gi|219950568|gb|ACL60960.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Methylobacterium nodulans ORS 2060]
          Length = 239

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 13/150 (8%)

Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKK 277
           + + +DPH K+              V ++ E          R+  ++ ++   D  DL  
Sbjct: 88  LAVAIDPHGKVHYGQD--DVGGDHVVAVLGEGVTDAYLAELREDGVSYLFAGPDGHDLAG 145

Query: 278 LLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS-------PL 329
            +  L    GV +LL+EGG A+  +F+ + L+D + L     + G  G+PS       P 
Sbjct: 146 AMATLGEVFGVGTLLLEGGGAINGAFLKAGLIDEVSLLVHPAIDGLAGVPSIFDYRGAPD 205

Query: 330 EEGYLEKNFMCVRRDYF-GSDVCLEYIGKN 358
           E+    +     R +   G  V L Y  ++
Sbjct: 206 EKPAAGRALRHFRTETLDGGTVWLRYRVED 235


>gi|257453281|ref|ZP_05618580.1| deoxycytidylate deaminase [Fusobacterium sp. 3_1_5R]
 gi|257467124|ref|ZP_05631435.1| deoxycytidylate deaminase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315918255|ref|ZP_07914495.1| deoxycytidylate deaminase [Fusobacterium gonidiaformans ATCC 25563]
 gi|317059814|ref|ZP_07924299.1| deoxycytidylate deaminase [Fusobacterium sp. 3_1_5R]
 gi|313685490|gb|EFS22325.1| deoxycytidylate deaminase [Fusobacterium sp. 3_1_5R]
 gi|313692130|gb|EFS28965.1| deoxycytidylate deaminase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 160

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 33/158 (20%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
           ++D  FM  AL  +         N  V   IV  D  +IG G                  
Sbjct: 8   TWDEYFMGVALLSAMRSK---DPNTQVGACIVSPDKKIIGLGYNGLPKGCEDDEFPWERE 64

Query: 47  -----TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                T Y    HAE+ A+  + +  +  T YV L PC        C++ II+ GIR +V
Sbjct: 65  GEFLETKYPYVCHAELNAILNSTQSLKNCTIYVALFPCHE------CSKAIIQSGIREIV 118

Query: 102 VCVDDP-DVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138
              D   +   +    + L   G++  ++ ++   ++L
Sbjct: 119 YLSDKYAETESNIASKRMLDSAGVVYRKLEKTCQNLYL 156


>gi|258508144|ref|YP_003170895.1| guanine deaminase [Lactobacillus rhamnosus GG]
 gi|258539359|ref|YP_003173858.1| guanine deaminase [Lactobacillus rhamnosus Lc 705]
 gi|257148071|emb|CAR87044.1| Guanine deaminase [Lactobacillus rhamnosus GG]
 gi|257151035|emb|CAR90007.1| Guanine deaminase [Lactobacillus rhamnosus Lc 705]
 gi|259649462|dbj|BAI41624.1| deaminase [Lactobacillus rhamnosus GG]
          Length = 155

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 19/141 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG- 64
           FM+ A   ++ +V  +   P   C+IVK+G V+ R        +    H E+ A+ +AG 
Sbjct: 6   FMAMADEEAKANVNGSDGGP-FGCVIVKNGQVVSRAHNRVLVDHDPTAHGEITAIRKAGQ 64

Query: 65  ----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV---RVSGRGLQ 117
                +  G   Y +  PC      P C   II   I++V       D          + 
Sbjct: 65  ALGTHDLSGCELYTSAMPC------PMCLSAIIWANIKQVYYGNTADDAAAIGFRDAAIY 118

Query: 118 WLSQKGIIVDRMMESEGKIFL 138
                G+  + +  S+    L
Sbjct: 119 DFINAGLKGEMLKLSQHDRNL 139


>gi|306840968|ref|ZP_07473709.1| cytidine and deoxycytidylate deaminase family protein [Brucella sp.
           BO2]
 gi|306289025|gb|EFM60290.1| cytidine and deoxycytidylate deaminase family protein [Brucella sp.
           BO2]
          Length = 157

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 53/146 (36%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG-- 64
           M  AL  +    G     P +  +IV++G +I R             HAE+ A+ +AG  
Sbjct: 16  MDIALEEAH-AAGERGEVP-IGAVIVRNGEIIARAGNRTREFNDVTAHAEILAIRQAGEV 73

Query: 65  ---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW--- 118
              E       YVTLEPC+       CA  I    IRR+     DP       G ++   
Sbjct: 74  LGSERLIDCDLYVTLEPCAM------CAAAISFARIRRLYYGASDPKGGGIEHGGRFYTQ 127

Query: 119 --LSQKGIIVDRMMESEGKIFLHAYL 142
                   I     E++ +  L  + 
Sbjct: 128 PTCHHAPEIYPGFCEADARKILKDFF 153


>gi|304383618|ref|ZP_07366077.1| guanine deaminase [Prevotella marshii DSM 16973]
 gi|304335142|gb|EFM01413.1| guanine deaminase [Prevotella marshii DSM 16973]
          Length = 155

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 38/111 (34%), Gaps = 17/111 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
              M  A+  S   V           +I KDG +I  G  +    +    HAEV A+ +A
Sbjct: 4   EELMRKAIALSEESVKNGGG--PFGAVIAKDGEIIAEGANSVTKDHDPTAHAEVNAIRKA 61

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
                  +  G   Y + EPC      P C   I    + ++    D  D 
Sbjct: 62  SRKLGTFDLSGCEIYTSCEPC------PMCLGAIYWAHLDKIYYANDRKDA 106


>gi|163838825|ref|YP_001623230.1| tRNA-specific adenosine deaminase [Renibacterium salmoninarum ATCC
           33209]
 gi|162952301|gb|ABY21816.1| tRNA-specific adenosine deaminase [Renibacterium salmoninarum ATCC
           33209]
          Length = 161

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 62/162 (38%), Gaps = 27/162 (16%)

Query: 1   MPV----SSFDAR--FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG--- 51
           MP     S  D    +M AAL  ++  +  T   P  A ++   G V+G G         
Sbjct: 1   MPFESEPSDADKFRSWMGAALVEAQAAL-QTEDVPIGAVVLDASGNVVGTGRNRREADGD 59

Query: 52  -CPHAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
              HAEV AL  A E        G T  VTLEPC+       CA  I+   + RVV    
Sbjct: 60  PTAHAEVLALRAAAEATGSWRLDGCTLVVTLEPCAM------CAGAIVLAKVPRVVFGAW 113

Query: 106 DPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
           D     +G   + L +  +     +   + E+E  I L  + 
Sbjct: 114 DAKAGAAGSVFEILREPRLNHWVEVYPGVREAESAILLREFF 155


>gi|323507722|emb|CBQ67593.1| related to TAD2-tRNA-specific adenosine deaminase 2 [Sporisorium
            reilianum]
          Length = 1276

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 61/180 (33%), Gaps = 40/180 (22%)

Query: 3    VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
             S  D ++M  AL  ++  +   +  P V  + V+ G VI RG            HAE++
Sbjct: 938  QSEEDLKWMREALAMAQEAL-EANEVP-VGGVFVRKGQVIARGRNRTNELLNATRHAELE 995

Query: 59   ALE--------EAGEEA-------------RGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
            A++         A + A             +  T YVT+EPC   G        + + GI
Sbjct: 996  AIDHILSIMPPSAPDFAVAPHSGPEGDNPFKDTTLYVTIEPCIMCG------AALRQIGI 1049

Query: 98   RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME-------SEGKIFLHAYLTRQVEKRS 150
             RVV    +     +G  L       I+     E        E  + L  +   +     
Sbjct: 1050 GRVVFGAGNERFGGNGSVLGLHDDDAIVSSPGYESVGGYLRDEAIMMLRRFYVTENTNAP 1109


>gi|294495182|ref|YP_003541675.1| CMP/dCMP deaminase zinc-binding protein [Methanohalophilus mahii
           DSM 5219]
 gi|292666181|gb|ADE36030.1| CMP/dCMP deaminase zinc-binding protein [Methanohalophilus mahii
           DSM 5219]
          Length = 147

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 18/147 (12%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
           +FM  A+  +    G       +  ++V+DG++IGRG            HAE+  + +AG
Sbjct: 3   QFMKEAINEA--MAGRDKGGIPIGSVLVRDGMIIGRGHNLRVQNDDPLAHAEISCMRDAG 60

Query: 65  --EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                     Y TL PC        CA  +++ GI++VVV   +           +L  K
Sbjct: 61  RIGSYADTVLYSTLMPCY------LCAGAVVQFGIKKVVVGESETFEGAQ----DFLRSK 110

Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKR 149
           G+ V  +  SE K  +  ++    E  
Sbjct: 111 GVEVVDLGLSECKTLMKEFIREYPELW 137


>gi|303390913|ref|XP_003073687.1| deoxycytidylate deaminase [Encephalitozoon intestinalis ATCC 50506]
 gi|303302834|gb|ADM12327.1| deoxycytidylate deaminase [Encephalitozoon intestinalis ATCC 50506]
          Length = 149

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 19/160 (11%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQA 59
           SS  + FM  AL  +            V C++V+DGIV+ +             HAEV +
Sbjct: 5   SSRHSFFMDMALDQAEKA--FDQLEVPVGCVVVRDGIVVSKSHNMTNANKSPLDHAEVIS 62

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           +     +   +T YVT EPC        C   +      RV     +             
Sbjct: 63  IRS--TDCSNSTFYVTCEPCIM------CMGILGRLKGVRVYYGCKNEIFGSETIC---- 110

Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
              GI    + +      L  + +R+         K+   
Sbjct: 111 -GVGIESTYLPDDRCFKILQKFYSRENAFAPDEKRKLKNR 149


>gi|189462552|ref|ZP_03011337.1| hypothetical protein BACCOP_03242 [Bacteroides coprocola DSM 17136]
 gi|189430713|gb|EDU99697.1| hypothetical protein BACCOP_03242 [Bacteroides coprocola DSM 17136]
          Length = 144

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 17/149 (11%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
           + D  +M  AL  ++           V  ++V    +I R      T      HAE+QA+
Sbjct: 2   ADDVFYMKQALIEAQKAA--DRGEVPVGAVVVCRDRIIARSHNLTETLNDVTAHAEMQAI 59

Query: 61  EEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A     G      T YVT+EPC        CA  I      ++V   +D         
Sbjct: 60  TAAANTLGGKYLNECTLYVTVEPC------VMCAGAIAWAQTGKLVFGAEDEKRGYQRYA 113

Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
              L  K ++V  ++  +    +  +  +
Sbjct: 114 PDALHPKTVVVKGILADDCAQLMKGFFKK 142


>gi|319901465|ref|YP_004161193.1| CMP/dCMP deaminase zinc-binding protein [Bacteroides helcogenes P
           36-108]
 gi|319416496|gb|ADV43607.1| CMP/dCMP deaminase zinc-binding protein [Bacteroides helcogenes P
           36-108]
          Length = 156

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 41/119 (34%), Gaps = 25/119 (21%)

Query: 8   ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
             FM  A++ +        G          +IVKDG ++G+G  +         HAEV A
Sbjct: 5   KEFMETAIQLALDNINRGGG------PFGAVIVKDGKIVGQGCNSVTNHLDPTAHAEVMA 58

Query: 60  LEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           +    +        G   Y + EPC      P C   I    I R+       D   +G
Sbjct: 59  IRNTCQALDTFILEGCEIYSSCEPC------PMCLSAIYWAHIDRIYYACTKCDAAQAG 111


>gi|311897119|dbj|BAJ29527.1| putative deaminase [Kitasatospora setae KM-6054]
          Length = 179

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 47/121 (38%), Gaps = 18/121 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVT--AYGGCP--HAEVQALEEAGE 65
           M  A+  +   +   + +  V   ++  DG V+GRG       G P  HAEV A+  A  
Sbjct: 37  MRLAIEEA--ALATATGDVPVGAFVLGPDGTVLGRGHNVREAVGDPTGHAEVVAIRAAAA 94

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                   G T  VTLEPC        CA  I+   + RVV    DP    +G     + 
Sbjct: 95  EVGEWRLSGCTLVVTLEPC------TMCAGAIVLSRLARVVFGAYDPKAGAAGSLFDVVR 148

Query: 121 Q 121
            
Sbjct: 149 D 149


>gi|259650544|dbj|BAI42706.1| putative cytosine/adenosine deaminase [Lactobacillus rhamnosus GG]
          Length = 170

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 15/101 (14%)

Query: 30  SVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            +  ++V D  +IGRG     T      HAE+ A++ A            + +VTLEPC 
Sbjct: 29  PIGAVVVHDQQIIGRGYNLRETTQDATQHAEILAIQAACRQLGTWRLEDCSLFVTLEPC- 87

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                P CA  +I   I        DP   V+G     L  
Sbjct: 88  -----PMCAGTMINARIATCYFGATDPKAGVAGTFYNLLED 123


>gi|225570086|ref|ZP_03779111.1| hypothetical protein CLOHYLEM_06182 [Clostridium hylemonae DSM
           15053]
 gi|225161556|gb|EEG74175.1| hypothetical protein CLOHYLEM_06182 [Clostridium hylemonae DSM
           15053]
          Length = 162

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 56/155 (36%), Gaps = 35/155 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
           S+D  FM  A+      +     N  V C IV +D  ++  G                  
Sbjct: 10  SWDEYFMGVAM---LSGMRSKDPNTQVGCCIVSQDNKILSMGYNGLPIGCSDDEFPWDRE 66

Query: 47  ------TAYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    H+E+ A+    G    GA  YV+L PC+       CA+ II+ GI+ 
Sbjct: 67  GEDPLETKYVYTVHSELNAILNYRGGSLEGAKLYVSLFPCNE------CAKAIIQSGIKE 120

Query: 100 VVV-CVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
           V+  C    D       ++     G+   +   +E
Sbjct: 121 VIFDCNKYEDTAAVKASMRMFDAAGVRYHQYHRTE 155


>gi|330995533|ref|ZP_08319436.1| putative ComE operon protein 2 [Paraprevotella xylaniphila YIT
           11841]
 gi|329575313|gb|EGG56858.1| putative ComE operon protein 2 [Paraprevotella xylaniphila YIT
           11841]
          Length = 149

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 53/153 (34%), Gaps = 32/153 (20%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC------------ 52
             D R++  A  ++            V  LIVKD ++I  G                   
Sbjct: 10  ELDLRYLRMARIWAENSYCERRK---VGALIVKDKMIISDGYNGTPAGFENVCEDENHLT 66

Query: 53  ----PHAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE  A   +  +G  + GAT YVT  PC        C++ II+ GI++V     
Sbjct: 67  KPYVLHAEANAITKIARSGNNSEGATLYVTDAPCIE------CSKLIIQSGIKKVFYARQ 120

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138
                    G+  L + GI V  +        L
Sbjct: 121 YRLT----DGIDLLQRAGIEVHYLPLETQTEEL 149


>gi|295132300|ref|YP_003582976.1| cytidine/deoxycytidylate deaminase family protein [Zunongwangia
           profunda SM-A87]
 gi|294980315|gb|ADF50780.1| cytidine/deoxycytidylate deaminase family protein [Zunongwangia
           profunda SM-A87]
          Length = 143

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 36/146 (24%)

Query: 9   RFMSAALRFSRWHVGLTS-TNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53
           ++  A LR +R    L+      V  +IVKD ++I  G     G P              
Sbjct: 8   KYDKAYLRIAREWSKLSHCKRKQVGAVIVKDRMIISDGY---NGTPSGFENFCEDEEGYT 64

Query: 54  -----HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE  A+     + +  +GAT Y+T+ PC        C++ I + GI R+V CVD
Sbjct: 65  KWYVLHAEANAILKVAASTQSCQGATLYITMSPCKE------CSKLIHQAGITRLVYCVD 118

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMME 131
             D      GL +L + G+ + ++ +
Sbjct: 119 YKD----NSGLDFLKKAGVDLIQITQ 140


>gi|283769499|ref|ZP_06342395.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bulleidia extructa W1219]
 gi|283103767|gb|EFC05153.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bulleidia extructa W1219]
          Length = 157

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 53/145 (36%), Gaps = 33/145 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +D+ FM  A   +         N  V   IV  +  V+  G                  
Sbjct: 4   PWDSYFMGLAHLSALRSK---DPNTQVGAAIVDENHRVVSVGYNGLPRGCEDSDYPWSRE 60

Query: 47  -----TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                T Y    HAE+ A+  +    +  T YV+L PC+       CA+ II+ GIRRVV
Sbjct: 61  GNVLETKYPYVVHAELNAILNSKWPVKDCTIYVSLFPCNE------CAKAIIQSGIRRVV 114

Query: 102 VCVDDPD-VRVSGRGLQWLSQKGII 125
              D  +   ++    + L   G+ 
Sbjct: 115 YESDKYNGTEMNIASKRMLESAGVE 139


>gi|332186892|ref|ZP_08388634.1| ribD C-terminal domain protein [Sphingomonas sp. S17]
 gi|332013225|gb|EGI55288.1| ribD C-terminal domain protein [Sphingomonas sp. S17]
          Length = 228

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 21/152 (13%)

Query: 222 IILDPHFKLSLDSKII----KTALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDL 275
           ++LD        +KI+           V+++T++         R   ++ I+   +  DL
Sbjct: 80  VVLD------EQAKIVWARGDIGDDPIVVVLTKDVADSHLAGLRADGVSYIFAGAETIDL 133

Query: 276 KKLLTIL-VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
           + +  IL    GV +LLVEGG      F+ + L+D I +     V G  G PS    G  
Sbjct: 134 RAVPEILNRELGVKTLLVEGGGTANGEFLRAGLIDEISMALCPAVDGGAGAPSLFHSGDA 193

Query: 335 EKNF------MCVRRDYFGSD--VCLEYIGKN 358
           E N       + +       D  + L Y  +N
Sbjct: 194 EANTPAPVTSLTLTHHEVLEDGVIWLRYRVEN 225


>gi|189499637|ref|YP_001959107.1| CMP/dCMP deaminase zinc-binding [Chlorobium phaeobacteroides BS1]
 gi|189495078|gb|ACE03626.1| CMP/dCMP deaminase zinc-binding [Chlorobium phaeobacteroides BS1]
          Length = 156

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 57/157 (36%), Gaps = 27/157 (17%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHA 55
           M +S     FM  A R +            V  ++   +G +IGRG            HA
Sbjct: 1   MNLS----YFMEPAFREAIKA--YEKKEVPVGAVVFDANGHIIGRGYNQVEALTDATAHA 54

Query: 56  EVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ AL  A      +     T  VTLEPC      P CA  I+   + RVV    D  + 
Sbjct: 55  EMIALTSAMATLGSKYLSDCTLAVTLEPC------PMCAGAIVNAKVGRVVFGAYDAKMG 108

Query: 111 VSGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
             G  +       L+ +  +   ++E + +  L  + 
Sbjct: 109 ACGTVMNITASRDLNHQPEVYGGILEHKAQSLLQEFF 145


>gi|320528437|ref|ZP_08029599.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Solobacterium moorei F0204]
 gi|320131351|gb|EFW23919.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Solobacterium moorei F0204]
          Length = 164

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 54/149 (36%), Gaps = 33/149 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGV-------------TAYG 50
           S+D  FM  A   +         N  V   IV D   V+  G                  
Sbjct: 9   SWDEYFMGLAHLSALRSK---DPNTKVGAAIVDDNHRVVSVGYNGFPKGCSDEVFPWGRD 65

Query: 51  GCP---------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           G           HAE+ A+  +     G T YV+L PC+       CA+ II+ GI R+V
Sbjct: 66  GDTLDSKYAFVVHAELNAILNSKWPVVGCTIYVSLFPCNE------CAKAIIQSGIHRIV 119

Query: 102 VCVDDPD-VRVSGRGLQWLSQKGIIVDRM 129
              D  + V  +    + L   G+ + ++
Sbjct: 120 YESDKYNGVDTNIASKRMLKAAGVELVQL 148


>gi|121702783|ref|XP_001269656.1| cytosine deaminase, putative [Aspergillus clavatus NRRL 1]
 gi|119397799|gb|EAW08230.1| cytosine deaminase, putative [Aspergillus clavatus NRRL 1]
          Length = 148

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 21/146 (14%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCPHAEVQALEEAGEEA 67
           AA+  ++   GL      +   +V KDG ++GRG            HAE+ ALE++G   
Sbjct: 9   AAVEEAKK--GLAEGGVPIGAALVSKDGKILGRGHNMRVQKGSAVLHAEMAALEDSGRLP 66

Query: 68  ----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
                GAT Y TL PC        C    I   ++RVV+  +   V       ++L  +G
Sbjct: 67  GSAYEGATMYTTLSPCDM------CTGACILYNVKRVVIGENKNFVGGE----EYLLSRG 116

Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKR 149
             V  +   E K F+ A++  + E  
Sbjct: 117 REVVVLDNEECKEFMGAFIKEKPELW 142


>gi|109072525|ref|XP_001091638.1| PREDICTED: tRNA-specific adenosine deaminase 2 isoform 1 [Macaca
           mulatta]
          Length = 191

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 23/126 (18%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
            ++M  A+  ++  +  T     V CL+V +  V+G+G            HAE+ A+++ 
Sbjct: 23  EKWMEEAMHMAKEALENTEV--PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQV 80

Query: 64  GEEAR-----------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            +  R               YVT+EPC        CA  +    I  VV    +      
Sbjct: 81  LDWCRRSGKSPSEVFEHTVLYVTVEPCIM------CAAALRLMKIPLVVYGCQNERFGGC 134

Query: 113 GRGLQW 118
           G  L  
Sbjct: 135 GSVLNI 140


>gi|229552285|ref|ZP_04441010.1| competence protein ComEB [Lactobacillus rhamnosus LMS2-1]
 gi|229314357|gb|EEN80330.1| competence protein ComEB [Lactobacillus rhamnosus LMS2-1]
          Length = 170

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 51/143 (35%), Gaps = 33/143 (23%)

Query: 5   SFDARFMSAALRFSRW-HVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP--------- 53
           S+D  F    L  ++      T    +V  ++V++  +I  G   A  G P         
Sbjct: 32  SWDHYF----LELAKKVSERSTCERATVGAVLVQEHRIIATGYNGAISGDPHCDEAGHLM 87

Query: 54  ---------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                    HAE+ A+      G    GAT YV   PC +      C + +I+ GI+RVV
Sbjct: 88  RDGHCIRTIHAEMNAIIQCAANGVSTHGATVYVNFFPCLN------CTKALIQAGIKRVV 141

Query: 102 VCVDDPDVRVSGRGLQWLSQKGI 124
              D  +       L       +
Sbjct: 142 YAHDYRNDPYGETLLAQHHVAVV 164


>gi|123494611|ref|XP_001326555.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121909471|gb|EAY14332.1| hypothetical protein TVAG_026530 [Trichomonas vaginalis G3]
          Length = 151

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 12/150 (8%)

Query: 220 MRII-LDPHFKLSLDSKI--IKTALLAPVI-IVTENDDPVLALAFRKKNINIIYC--DCR 273
           M I+ +DP  KL  D           A VI I+TE   P      R+  ++ I    D  
Sbjct: 1   MYIVGIDPSGKLPWDRNTIKFNERPEAHVIEILTEKASPQYKNLLRRLKVSYIIAGKDDI 60

Query: 274 DLKKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSP 328
           D K +++ L     +  + VEGG  +  S + +++VD + +  S    G   I    P+P
Sbjct: 61  DWKSVMSKLKKDFHINVISVEGGGMINWSVLKAKIVDEVSILMSAAADGTRSISLFEPNP 120

Query: 329 LEEGYLEKNFMCVRRDYFGSD-VCLEYIGK 357
            E       F     +   S+ + ++YI K
Sbjct: 121 YETNTDPMEFTLKSVEKINSNEIWIKYIPK 150


>gi|294630214|ref|ZP_06708774.1| cytidine and deoxycytidylate deaminase [Streptomyces sp. e14]
 gi|292833547|gb|EFF91896.1| cytidine and deoxycytidylate deaminase [Streptomyces sp. e14]
          Length = 142

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGC----PHAEVQALEEAGE 65
           M  AL  +R  V     +  V  +++  DG V+G G            HAEV A+  A E
Sbjct: 1   MRLALAEARRAV--EGGDVPVGAVVLSADGAVLGAGHNEREATGDPTAHAEVLAIRRAAE 58

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                   G T  VTLEPC        CA  ++   + RVV    D     +G     + 
Sbjct: 59  RVGEWRLSGCTLVVTLEPC------TMCAGALVLSRVDRVVYGARDEKAGAAGSLWDVVR 112

Query: 121 QK 122
            +
Sbjct: 113 DR 114


>gi|238021048|ref|ZP_04601474.1| hypothetical protein GCWU000324_00945 [Kingella oralis ATCC 51147]
 gi|237868028|gb|EEP69034.1| hypothetical protein GCWU000324_00945 [Kingella oralis ATCC 51147]
          Length = 238

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 15/101 (14%)

Query: 30  SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  ++V  G +I +             HAE+QAL  AG+            YV+LEPC+
Sbjct: 114 PVGAVVVHRGEIIAQAHNRCVADCSISHHAEIQALAAAGQVLGNYRLNECDVYVSLEPCA 173

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                  CA  +I+  + RVV    +P    +G  L   S 
Sbjct: 174 M------CASAMIQARVARVVFAAHEPKTGAAGSVLNLFSN 208


>gi|259508111|ref|ZP_05751011.1| tRNA-specific adenosine deaminase [Corynebacterium efficiens
           YS-314]
 gi|259164334|gb|EEW48888.1| tRNA-specific adenosine deaminase [Corynebacterium efficiens
           YS-314]
          Length = 159

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 53/154 (34%), Gaps = 27/154 (17%)

Query: 6   FDARFMSAALRFSRWHVGLTST-NPSVACLI-VKDGIVIGRGV----TAYGGCPHAEVQA 59
            D R M  AL  +R     T   +  V  +I   DG ++        T      HAE+ A
Sbjct: 12  QDERRMRHALEIARQ----TPPGDVPVGAVIYAPDGQILATATNRRETDRDPTAHAEIIA 67

Query: 60  LEEA------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           L  A      G      T  VTLEPCS       CA  ++   + R+V    +P     G
Sbjct: 68  LRCAARRFTDGWRLTDCTLVVTLEPCSM------CAGALVGARVGRLVFGAFEPRTGACG 121

Query: 114 RGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
                +    +     +   ++E +    +  + 
Sbjct: 122 SVFDVVRDPAVLHRAEVTGGVLEEDCAKLMTDFF 155


>gi|189347424|ref|YP_001943953.1| CMP/dCMP deaminase zinc-binding [Chlorobium limicola DSM 245]
 gi|189341571|gb|ACD90974.1| CMP/dCMP deaminase zinc-binding [Chlorobium limicola DSM 245]
          Length = 152

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 56/149 (37%), Gaps = 23/149 (15%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA 63
            +M  A R +            V  ++   +G + GRG            HAE+ AL  A
Sbjct: 6   FYMEQAFREALKA--YEKKEVPVGAVVFDSNGNIAGRGHNQVEALSDATAHAEMIALTSA 63

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                 +     T  VT+EPC      P CA  I+   + RV+    DP +  SG  L  
Sbjct: 64  MATLGSKYLDACTLAVTMEPC------PMCAGAIVNAKVGRVIFGAYDPKMGASGTVLNI 117

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  ++  +ME++    L  + 
Sbjct: 118 TGCRELNHQPEVIGGIMENKCSELLRDFF 146


>gi|282863444|ref|ZP_06272503.1| CMP/dCMP deaminase zinc-binding [Streptomyces sp. ACTE]
 gi|282561779|gb|EFB67322.1| CMP/dCMP deaminase zinc-binding [Streptomyces sp. ACTE]
          Length = 142

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 18/122 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGC----PHAEVQALEEA-- 63
           M  AL  +      ++ +  V  +++  DG  +  G            HAEV AL  A  
Sbjct: 1   MRQALHEAAQAA--SAGDVPVGAVVLGPDGAPLATGHNEREATGDPTAHAEVLALRRAAS 58

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G    G T  VTLEPC        CA  +++  + RVV    D     +G     L 
Sbjct: 59  VLGGWRLTGCTLVVTLEPC------TMCAGALVQSRVARVVYGARDEKAGAAGSLWDVLR 112

Query: 121 QK 122
            +
Sbjct: 113 DR 114


>gi|223938204|ref|ZP_03630100.1| bifunctional deaminase-reductase domain protein [bacterium
           Ellin514]
 gi|223893076|gb|EEF59541.1| bifunctional deaminase-reductase domain protein [bacterium
           Ellin514]
          Length = 227

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 10/139 (7%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLL 279
           + LDP  +L+  S  I    +    I+ E          +KKNI+ I+      DLK++L
Sbjct: 84  VALDPSGRLNWKSNHIDADHIVE--ILAEKVSDSYLEFLQKKNISYIFGGKTQIDLKRVL 141

Query: 280 TILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-- 336
             L     +  LL+EGG  +  SF+ + L+D + L    +  G  G  S  +     +  
Sbjct: 142 EKLGKYFQIKKLLLEGGGKINGSFLAAGLIDELSLLLMPVADGTIGTASLFDIETPSRKK 201

Query: 337 ---NFMCVRRDYFGSDVCL 352
                  +      SD+  
Sbjct: 202 SVSRLKLLATKKLTSDILW 220


>gi|25026753|ref|NP_736807.1| hypothetical protein CE0197 [Corynebacterium efficiens YS-314]
 gi|23492032|dbj|BAC17007.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 160

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 53/154 (34%), Gaps = 27/154 (17%)

Query: 6   FDARFMSAALRFSRWHVGLTST-NPSVACLI-VKDGIVIGRGV----TAYGGCPHAEVQA 59
            D R M  AL  +R     T   +  V  +I   DG ++        T      HAE+ A
Sbjct: 13  QDERRMRHALEIARQ----TPPGDVPVGAVIYAPDGQILATATNRRETDRDPTAHAEIIA 68

Query: 60  LEEA------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           L  A      G      T  VTLEPCS       CA  ++   + R+V    +P     G
Sbjct: 69  LRCAARRFTDGWRLTDCTLVVTLEPCSM------CAGALVGARVGRLVFGAFEPRTGACG 122

Query: 114 RGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
                +    +     +   ++E +    +  + 
Sbjct: 123 SVFDVVRDPAVLHRAEVTGGVLEEDCAKLMTDFF 156


>gi|313894545|ref|ZP_07828109.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Veillonella sp. oral taxon 158 str. F0412]
 gi|313440941|gb|EFR59369.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Veillonella sp. oral taxon 158 str. F0412]
          Length = 159

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 53/146 (36%), Gaps = 33/146 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT---------------- 47
           S+D  FM  A+  ++        N  V   IV  D  ++  G                  
Sbjct: 9   SWDEYFMGVAILAAQRSK---DPNTQVGACIVSNDNKILSIGYNGMPLNCSDDDFTWERD 65

Query: 48  -----AYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                 Y    H+E+ A+    G    G+  YVTL PC+       CA+ II+ GI+ V+
Sbjct: 66  TADDNKYFYTVHSELNAILNYRGGSLEGSKIYVTLFPCNE------CAKAIIQSGIKAVI 119

Query: 102 VCVD-DPDVRVSGRGLQWLSQKGIIV 126
              D   D +      + L   G+ +
Sbjct: 120 YRDDLYKDTKEVKASKRMLKTAGVEI 145


>gi|238019264|ref|ZP_04599690.1| hypothetical protein VEIDISOL_01128 [Veillonella dispar ATCC 17748]
 gi|237863963|gb|EEP65253.1| hypothetical protein VEIDISOL_01128 [Veillonella dispar ATCC 17748]
          Length = 159

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 53/146 (36%), Gaps = 33/146 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT---------------- 47
           S+D  FM  A+  ++        N  V   IV  D  ++  G                  
Sbjct: 9   SWDEYFMGVAILAAQRSK---DPNTQVGACIVSNDNKILSIGYNGMPLNCSDDDFTWERD 65

Query: 48  -----AYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                 Y    H+E+ A+    G    G+  YVTL PC+       CA+ II+ GI+ V+
Sbjct: 66  SADDNKYFYTVHSELNAILNYRGGSLEGSKIYVTLFPCNE------CAKAIIQSGIKAVI 119

Query: 102 VCVD-DPDVRVSGRGLQWLSQKGIIV 126
              D   D +      + L   G+ +
Sbjct: 120 YRDDLYKDTKEVKASKRMLKTAGVEI 145


>gi|269798024|ref|YP_003311924.1| CMP/dCMP deaminase zinc-binding protein [Veillonella parvula DSM
           2008]
 gi|294791904|ref|ZP_06757052.1| deoxycytidylate deaminase (dCMP deaminase) [Veillonella sp. 6_1_27]
 gi|269094653|gb|ACZ24644.1| CMP/dCMP deaminase zinc-binding protein [Veillonella parvula DSM
           2008]
 gi|294457134|gb|EFG25496.1| deoxycytidylate deaminase (dCMP deaminase) [Veillonella sp. 6_1_27]
          Length = 159

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 53/146 (36%), Gaps = 33/146 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT---------------- 47
           S+D  FM  A+  ++        N  V   IV  D  ++  G                  
Sbjct: 9   SWDEYFMGVAILAAQRSK---DPNTQVGACIVSNDNKILSIGYNGMPLNCSDDDFTWERD 65

Query: 48  -----AYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                 Y    H+E+ A+    G    G+  YVTL PC+       CA+ II+ GI+ V+
Sbjct: 66  TADDNKYFYTVHSELNAILNYRGGSLEGSKIYVTLFPCNE------CAKAIIQSGIKAVI 119

Query: 102 VCVD-DPDVRVSGRGLQWLSQKGIIV 126
              D   D +      + L   G+ +
Sbjct: 120 YRDDLYKDTKEVKASKRMLKTAGVEI 145


>gi|325104661|ref|YP_004274315.1| CMP/dCMP deaminase zinc-binding protein [Pedobacter saltans DSM
           12145]
 gi|324973509|gb|ADY52493.1| CMP/dCMP deaminase zinc-binding protein [Pedobacter saltans DSM
           12145]
          Length = 157

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 61/167 (36%), Gaps = 39/167 (23%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M +S FD  FM+ A   ++        N  V  ++ KD  +I  G               
Sbjct: 1   MSLS-FDQIFMNLASDLAQKS--HCVKN-HVGAVLTKDTRIISIGYNGPPAGTHNCDEEW 56

Query: 54  -----------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFII 93
                            HAE  A+  A   G + +GAT Y TL PC        CA+ I 
Sbjct: 57  PEEGCPRDSKNSCSLALHAEENAILYAVKNGAQIQGATLYTTLSPCI------SCARLIY 110

Query: 94  ECGIRRVV--VCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138
             GI+RV                G+++L++ G+  +++ + E +   
Sbjct: 111 ASGIQRVFYKYSYAAYKGLSLDEGVEFLNKFGVQCNKLEDREYREVH 157


>gi|17541138|ref|NP_502546.1| hypothetical protein JC8.4 [Caenorhabditis elegans]
 gi|6425182|emb|CAB05231.1| C. elegans protein JC8.4, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 176

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 61/171 (35%), Gaps = 24/171 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQ 58
           +S+ D  F+  A   ++    L      V C+ V +G  IGRG       G P  HAE+ 
Sbjct: 6   LSAEDTAFLEKAFELAQEA--LDEDEVPVGCVFVVNGTEIGRGRNRVNETGDPTRHAEMV 63

Query: 59  ALEE--------AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           A+ E          +  + +T YV+LEPC        C+  + + GIR++V   ++P   
Sbjct: 64  AVTEMWKEHGTGCEDLLKKSTLYVSLEPCIM------CSSAMYQLGIRKMVYGAENPRFG 117

Query: 111 VSGR----GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
                       +     IV  +        L  +  +          K  
Sbjct: 118 GVRSVGSAEKYRMEDNVQIVAGIWSERSVAMLKTFYEKLNPFAPPEKRKTK 168


>gi|150398810|ref|YP_001322577.1| CMP/dCMP deaminase zinc-binding [Methanococcus vannielii SB]
 gi|150011513|gb|ABR53965.1| CMP/dCMP deaminase zinc-binding [Methanococcus vannielii SB]
          Length = 146

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 20/149 (13%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEAG 64
           +FM  A++ ++  +G       +  ++V    VIGRG            HAE+ ALE AG
Sbjct: 3   KFMEEAIKEAK--LGAIEGGIPIGAVLVYKNKVIGRGHNKRIQKNSVVFHAEMDALENAG 60

Query: 65  ----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                  +    Y TL PC        C+  I+   I++V++  +           + L 
Sbjct: 61  RINSSIYKDCELYTTLSPCIM------CSGAILLYNIKKVIIGENKTFKGAE----ELLE 110

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           + G+ ++ + +      +  ++    E  
Sbjct: 111 KNGVKLEVLNDKNCIDMMEEFIKSNEELW 139


>gi|294672973|ref|YP_003573589.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing
           protein [Prevotella ruminicola 23]
 gi|294474140|gb|ADE83529.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Prevotella ruminicola 23]
          Length = 145

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 57/154 (37%), Gaps = 38/154 (24%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
             S  D R++  A  ++            V  L+VKD ++I  G     G P        
Sbjct: 7   KQSKLDVRYLRMARIWAENSYCKRR---QVGALVVKDKMIISDGY---NGTPSGFENVCE 60

Query: 54  -----------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                      HAE  A   L  +   + GAT Y+T  PC        CA+ II+ GI+R
Sbjct: 61  DDDNVTKPYVLHAEANAITKLARSNNNSDGATIYITASPCIE------CAKLIIQAGIKR 114

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
           VV             G++ L + GI V  +   +
Sbjct: 115 VVYGEKYRLT----DGIELLERAGIEVIYIGLED 144


>gi|229495862|ref|ZP_04389588.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
           endodontalis ATCC 35406]
 gi|229317175|gb|EEN83082.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
           endodontalis ATCC 35406]
          Length = 146

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 56/146 (38%), Gaps = 38/146 (26%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
            D R++  A  +S            V  LIVKD ++I  G     G P            
Sbjct: 10  LDKRYLRMARIWSENSYCTRRK---VGALIVKDQMIISDGY---NGTPSGFENVCEDESG 63

Query: 54  -------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A+ +    G  + GAT Y+T  PC        CA+ II+  I+RVV  
Sbjct: 64  LTKPYVLHAEANAITKVACSGNNSDGATIYITASPCVE------CAKLIIQSKIKRVVYG 117

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRM 129
            +         G+  L + GI V+ +
Sbjct: 118 EEYRLT----DGVDLLRRAGIEVEFV 139


>gi|241956270|ref|XP_002420855.1| cytosine aminohydrolase, putative; cytosine deaminase, putative
           [Candida dubliniensis CD36]
 gi|223644198|emb|CAX41008.1| cytosine aminohydrolase, putative [Candida dubliniensis CD36]
          Length = 150

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 19/155 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQ 58
           ++  D + +  AL  ++         P  +C+I  DG V+G+G            H E+ 
Sbjct: 1   MTFDDKKGLQIALDQAKKSYFE-GGIPIGSCIISSDGTVLGQGHNERIQKHSSILHGEMS 59

Query: 59  ALEEAGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           ALE AG       +  T Y TL PCS       C   I+  G +RVV+  +   +     
Sbjct: 60  ALENAGRLPGKTYKDCTIYTTLSPCSM------CTGAILLYGFKRVVMGENVNFLGNE-- 111

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
             + L + G+ V  + +      +  ++  + +  
Sbjct: 112 --KLLVENGVEVVNLNDQACIDLMAKFIKEKPQDW 144


>gi|167765189|ref|ZP_02437302.1| hypothetical protein BACSTE_03575 [Bacteroides stercoris ATCC
           43183]
 gi|167696817|gb|EDS13396.1| hypothetical protein BACSTE_03575 [Bacteroides stercoris ATCC
           43183]
          Length = 145

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 56/150 (37%), Gaps = 38/150 (25%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
              + D R++  A  ++            V  LIVKD ++I  G     G P        
Sbjct: 8   KQEALDKRYIRMASIWAENSYCQRR---QVGALIVKDKMIISDGY---NGTPSGFENVCE 61

Query: 54  -----------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                      HAE  A   +  +   + GAT YVT  PC        CA+ II+ GI+R
Sbjct: 62  DENNLTKPYVLHAEANAITKIARSNNSSNGATMYVTASPCIE------CAKLIIQAGIKR 115

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           VV             G++ L + GI V  M
Sbjct: 116 VVYSEKYRL----EDGIELLKRAGIEVIYM 141


>gi|228921710|ref|ZP_04085027.1| Cytosine deaminase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228837922|gb|EEM83246.1| Cytosine deaminase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 158

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 43/107 (40%), Gaps = 22/107 (20%)

Query: 13  AALRFSRWHVG-LTSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHAEVQALEEAGEE 66
            AL  +   +   T     V  +IV  +  VI RG            HAE+ A+  AGE 
Sbjct: 1   MALEEAEKALKENTYP---VGAVIVDGNNNVIARGRNRVHPQKDITAHAEIDAIRNAGEA 57

Query: 67  ARGA-------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
              A       T Y TLEPC      P C   I+   I+RVV  ++D
Sbjct: 58  MFDAKIKNEKFTIYSTLEPC------PMCTDGILFAKIQRVVWLLND 98


>gi|227820996|ref|YP_002824966.1| putative cytidine and deoxycytidylate deaminase [Sinorhizobium
           fredii NGR234]
 gi|227339995|gb|ACP24213.1| putative cytidine and deoxycytidylate deaminase [Sinorhizobium
           fredii NGR234]
          Length = 150

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 17/115 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
           + +   R+M AAL  +R           +  ++V DG V+               HAE++
Sbjct: 1   MMAETTRYMDAALDEARKAAAR--GEVPIGAVVVLDGEVVAAAGNRTRELRDITAHAEIE 58

Query: 59  ALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           A+ +A      E   GA  YVTLEPC        CA  I    IRR+    +DP 
Sbjct: 59  AIRQAAAAVGDERLSGADLYVTLEPC------TMCAAAISFARIRRLYYGAEDPK 107


>gi|17989385|ref|NP_542018.1| cytosine deaminase [Brucella melitensis bv. 1 str. 16M]
 gi|148558663|ref|YP_001257252.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           ovis ATCC 25840]
 gi|297249905|ref|ZP_06933606.1| cytosine deaminase [Brucella abortus bv. 5 str. B3196]
 gi|17985258|gb|AAL54282.1| cytosine deaminase [Brucella melitensis bv. 1 str. 16M]
 gi|148369948|gb|ABQ62820.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           ovis ATCC 25840]
 gi|297173774|gb|EFH33138.1| cytosine deaminase [Brucella abortus bv. 5 str. B3196]
          Length = 204

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 52/146 (35%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG-- 64
           M  AL  +    G     P +  +IV+DG +I R             HAE+  + +AG  
Sbjct: 63  MDIALEEAH-AAGERGEVP-IGAVIVRDGEIIARAGNRTREFNDVTAHAEILTIRQAGEM 120

Query: 65  ---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW--- 118
              E       YVTLEPC+       CA  I    IRR+     DP       G ++   
Sbjct: 121 LGSERLIDCDLYVTLEPCAM------CAAAISFARIRRLYYGASDPKGGGIEHGGRFYTQ 174

Query: 119 --LSQKGIIVDRMMESEGKIFLHAYL 142
                   I     E++ +  L  + 
Sbjct: 175 PTCHHAPEIYPGFCEADARKILKDFF 200


>gi|154150488|ref|YP_001404106.1| cytosine deaminase [Candidatus Methanoregula boonei 6A8]
 gi|153999040|gb|ABS55463.1| Cytosine deaminase [Methanoregula boonei 6A8]
          Length = 177

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 63/156 (40%), Gaps = 20/156 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEV 57
           P+  F  + +  A+  +R   GL      +  ++V DG ++GRG            HAE+
Sbjct: 27  PMDQFLEQNLQEAILEARK--GLAEGGIPIGSVLVIDGKIVGRGHNRRVQNNSAILHAEM 84

Query: 58  QALEEAGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
             LE AG       + AT + TL PC        C+  ++   I RVV+  +        
Sbjct: 85  DCLENAGRRTPKEYKRATLFSTLSPCDM------CSGVVLLYKIPRVVIGENATFKGPE- 137

Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
              ++L  +G+ +  +   E K  +  ++  + E  
Sbjct: 138 ---EYLRSRGVKILNLDNPECKQLMKDFIGSKPELW 170


>gi|311898591|dbj|BAJ30999.1| putative riboflavin-specific deaminase/reductase [Kitasatospora
           setae KM-6054]
          Length = 113

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 8/109 (7%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
           + +R  + L +A S D  I       + ++     ++V  +RA+SDAIL+G  T+ +D+P
Sbjct: 1   MAERPFVLLSVATSVDGYIDDTSSQRLLLSNADDFDRVDQVRAESDAILIGGNTLRSDNP 60

Query: 206 EL--------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
            L          R+   +   P+++ +     L  D K         V 
Sbjct: 61  RLLVNSDDRRAARVAAGKPEYPLKVTITASGDLDRDLKFWHFGDKKVVY 109


>gi|307293957|ref|ZP_07573801.1| CMP/dCMP deaminase zinc-binding [Sphingobium chlorophenolicum L-1]
 gi|306880108|gb|EFN11325.1| CMP/dCMP deaminase zinc-binding [Sphingobium chlorophenolicum L-1]
          Length = 152

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 17/107 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE- 65
           M  AL  +R      +    +  ++  DG ++G G            HAE+ A+  A   
Sbjct: 11  MRRALDLARSAA--EAGEVPIGAVVTLDGRIVGEGENRNRRDNDPTAHAEIVAIRAAAAH 68

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                  G   +VTLEPC+       CA  I    I R+     DP 
Sbjct: 69  LGDFRLNGCDLWVTLEPCAM------CAGAISHARIARLYYAAADPK 109


>gi|258539694|ref|YP_003174193.1| CMP/dCMP deaminase zinc-binding protein [Lactobacillus rhamnosus Lc
           705]
 gi|257151370|emb|CAR90342.1| CMP/dCMP deaminase, zinc-binding protein [Lactobacillus rhamnosus
           Lc 705]
 gi|328480168|gb|EGF49113.1| CMP/dCMP deaminase zinc-binding protein [Lactobacillus rhamnosus
           MTCC 5462]
          Length = 154

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 52/143 (36%), Gaps = 33/143 (23%)

Query: 5   SFDARFMSAALRFSRW-HVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP--------- 53
           S+D  F    L  ++      T    +V  ++V++  +I  G   A  G P         
Sbjct: 16  SWDHYF----LELAKKVSERSTCERATVGAVLVQEHRIIATGYNGAISGDPHCDEAGHLM 71

Query: 54  ---------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                    HAE+ A+ +    G    GAT YV   PC +      C + +I+ GI+RVV
Sbjct: 72  RDGHCIRTIHAEMNAIIQCAANGVSTHGATVYVNFFPCLN------CTKALIQAGIKRVV 125

Query: 102 VCVDDPDVRVSGRGLQWLSQKGI 124
              D  +       L       +
Sbjct: 126 YAHDYRNDPYGETLLAQHHVAVV 148


>gi|146299285|ref|YP_001193876.1| CMP/dCMP deaminase, zinc-binding [Flavobacterium johnsoniae UW101]
 gi|146153703|gb|ABQ04557.1| CMP/dCMP deaminase, zinc-binding [Flavobacterium johnsoniae UW101]
          Length = 147

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 52/147 (35%), Gaps = 17/147 (11%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           D  FM  AL+ +   +        V  +IV    VI R             HAE+Q++  
Sbjct: 7   DEYFMKKALQEAE--IAYEKGEIPVGAIIVVADKVIARSHNLTELLNDVTAHAEMQSITA 64

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G+  +  T YVTLEPC        CA  +    I ++V    D        G +
Sbjct: 65  AANFLGGKYLKDCTLYVTLEPC------QMCAGALYWSQISKIVFGARDEQRGFINMGTK 118

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTR 144
              +  ++   M      +    +L R
Sbjct: 119 LHPKTTVVSGVMANEAADLMKRFFLER 145


>gi|289426038|ref|ZP_06427785.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes SK187]
 gi|289427970|ref|ZP_06429674.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes J165]
 gi|295131701|ref|YP_003582364.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes SK137]
 gi|289153581|gb|EFD02295.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes SK187]
 gi|289158853|gb|EFD07053.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes J165]
 gi|291375889|gb|ADD99743.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes SK137]
          Length = 160

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 51/150 (34%), Gaps = 23/150 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEE 62
            + M+ AL  +R     T  +  +  +I+  +G V+               HAEV A+  
Sbjct: 9   RQAMTQALDVARRAA--TWGDVPIGAVILGANGEVLSEAGNERERTGDPTAHAEVLAIRR 66

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G      T  VTLEPC+    +      I+   I RVV    DP          
Sbjct: 67  AAEARDGWRLGDCTLVVTLEPCTMCAGT------IVAARIPRVVFGAFDPKAGAVSSLFD 120

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYL 142
            +    +     +V  +M  E    L  + 
Sbjct: 121 AMRDPRLPHRPKVVTGVMAEESSALLREFF 150


>gi|16078382|ref|NP_389200.1| guanine deaminase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309178|ref|ZP_03591025.1| guanine deaminase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221313504|ref|ZP_03595309.1| guanine deaminase [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221318426|ref|ZP_03599720.1| guanine deaminase [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221322700|ref|ZP_03603994.1| guanine deaminase [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321315069|ref|YP_004207356.1| guanine deaminase [Bacillus subtilis BSn5]
 gi|23396605|sp|O34598|GUAD_BACSU RecName: Full=Guanine deaminase; Short=GDEase; Short=Guanase;
           Short=Guanine aminase; AltName: Full=Guanine
           aminohydrolase; Short=GAH
 gi|2632037|emb|CAA05596.1| YkoA [Bacillus subtilis]
 gi|2633671|emb|CAB13174.1| guanine deaminase [Bacillus subtilis subsp. subtilis str. 168]
 gi|291483843|dbj|BAI84918.1| guanine deaminase [Bacillus subtilis subsp. natto BEST195]
 gi|320021343|gb|ADV96329.1| guanine deaminase [Bacillus subtilis BSn5]
          Length = 156

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 42/115 (36%), Gaps = 16/115 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA 63
             F+  A+  +   V      P    +IVKDG +I  G     T+     HAEV A+ +A
Sbjct: 4   ETFLKRAVTLACEGVNAGIGGP-FGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKA 62

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            +     +      Y + EPC      P C   I     + V    +  D   +G
Sbjct: 63  CKVLGAYQLDDCILYTSCEPC------PMCLGAIYWARPKAVFYAAEHTDAAEAG 111


>gi|87131002|gb|ABD24095.1| cytosine deaminase [Clavispora lusitaniae]
          Length = 153

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 21/157 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           MP    D   M  A   ++         P    LI +DG ++GRG            H E
Sbjct: 1   MPF--DDKLGMQIAFEEAQKGYAE-GGIPIGGALIHEDGTILGRGHNMRIQKNSATLHGE 57

Query: 57  VQALEEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           +  LE AG    G     T Y TL PC        C+   +  G++RVV+  ++  V   
Sbjct: 58  ISTLENAGRLPGGVYKNCTMYTTLSPCHM------CSGACLMYGVKRVVLGENENFVGAE 111

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
               + L   G+ V  M + + K  +  ++  + +  
Sbjct: 112 ----KLLESMGVEVVNMNDEKCKELMSRFIRERPQDW 144


>gi|308177903|ref|YP_003917309.1| RibD domain-containing protein [Arthrobacter arilaitensis Re117]
 gi|307745366|emb|CBT76338.1| RibD domain-containing protein [Arthrobacter arilaitensis Re117]
          Length = 252

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 72/214 (33%), Gaps = 16/214 (7%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD------- 203
            +      S D         S  +          LLR  +  ILVG GTV A+       
Sbjct: 28  FVRFNFVSSIDG-SAQVNGLSKGLGSPADGRIFALLRRLASVILVGAGTVRAEGYEGQLL 86

Query: 204 -DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
            D +++ R+       P+  ++     L  +  +   + + PV++ T             
Sbjct: 87  ADEDISWRVEQGMAPQPVLALISRGLNLEPNDPVFVQSPV-PVLLFTSVRVTSEQRQAFG 145

Query: 263 KNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
            N  ++         D ++++  L  +G   +  EGG  +   F  + +VDS  +  S  
Sbjct: 146 PNTTLVQVSETEGGCDPQEIIAYLQAQGHGFIHAEGGPHIFGQFAAAGVVDSACISYSPA 205

Query: 319 VIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           V+   G+          ++F       F  D  L
Sbjct: 206 VVAGDGMRIAAHGPQTFQSFDL--HALFEEDSML 237


>gi|319950276|ref|ZP_08024197.1| hypothetical protein ES5_11906 [Dietzia cinnamea P4]
 gi|319436074|gb|EFV91273.1| hypothetical protein ES5_11906 [Dietzia cinnamea P4]
          Length = 262

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 70/226 (30%), Gaps = 13/226 (5%)

Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203
           R             V+  +           ++    +     +R  +D ++VG  TV  +
Sbjct: 36  RSRPAHECWVTGHMVAGIDGTAAIDGRVGSLSTAPDQALFRRMREIADIVMVGAETVRRE 95

Query: 204 D--P-EL-----TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA---LLAPVIIVTEND 252
              P  L       R+ G +  +P   ++     L   +++   A       VI  T  D
Sbjct: 96  SYGPVRLSEEARARRVAGGKPATPPVAVISRSLDLDWSARLFADAPDDARTHVITCTAAD 155

Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
               A A +   +     D  +    L  L   G   +L EGG       + +  +D + 
Sbjct: 156 PARRAEAEKVATVVDAGSDAVEPAAALRALADLGHRVVLCEGGPTWLGELVAADRLDELC 215

Query: 313 LYRSQIVIGEGGIPSPLEE-GYLEKNFMCVRRDYFGSDVCLEYIGK 357
           L  S  ++G   +P  +   G     F        G  + L Y   
Sbjct: 216 LSISP-LMGGDPLPVCVNPAGAGIARFALKGTMADGDTLFLRYEAD 260


>gi|281419672|ref|ZP_06250671.1| cytidine/deoxycytidylate deaminase family protein [Prevotella copri
           DSM 18205]
 gi|281406201|gb|EFB36881.1| cytidine/deoxycytidylate deaminase family protein [Prevotella copri
           DSM 18205]
          Length = 150

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 58/153 (37%), Gaps = 37/153 (24%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
             +  D R++  A  ++            V  L+VKD ++I  G     G P        
Sbjct: 7   KQTKLDLRYLRMARIWAENSYCKRR---QVGALVVKDKMIISDGY---NGTPSGFENVCE 60

Query: 54  ----------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                     HAE  A   L  +   + G+T YVT  PC        CA+ II+ GI+RV
Sbjct: 61  DNNVTKPYVLHAEANAITKLARSSNNSEGSTLYVTASPCIE------CAKLIIQSGIKRV 114

Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
           V             G++ + + GI V+ +   E
Sbjct: 115 VYAEKYRL----DDGIKLMQRAGIKVEYLNPDE 143


>gi|168207992|ref|ZP_02633997.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens E str. JGS1987]
 gi|168210758|ref|ZP_02636383.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens B str. ATCC 3626]
 gi|168217464|ref|ZP_02643089.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens NCTC 8239]
 gi|169342382|ref|ZP_02863448.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens C str. JGS1495]
 gi|182626202|ref|ZP_02953960.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens D str. JGS1721]
 gi|169299502|gb|EDS81566.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens C str. JGS1495]
 gi|170660714|gb|EDT13397.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens E str. JGS1987]
 gi|170711173|gb|EDT23355.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens B str. ATCC 3626]
 gi|177908466|gb|EDT70999.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens D str. JGS1721]
 gi|182380416|gb|EDT77895.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens NCTC 8239]
          Length = 166

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 60/163 (36%), Gaps = 33/163 (20%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
           S+D  FM  AL  ++        N  V   IV  D  ++G G                  
Sbjct: 10  SWDEYFMGVALISAKRSK---DPNTQVGACIVDNDNKIVGIGYNGFPKGCSDDDLPWGNK 66

Query: 47  -----TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                T Y    HAE+ A L   G+  +    Y TL PC+       CA+ II+ GI  V
Sbjct: 67  GDFLETKYPYACHAELNAILNSTGKNVKNCRVYATLFPCNE------CAKAIIQAGITEV 120

Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT 143
           +   D        +  +++  K  +  R + S+ +  L ++  
Sbjct: 121 IYLSDKYKDTDIVKASKFMFDKANVKYRYLGSKRESLLISFNP 163


>gi|299134221|ref|ZP_07027414.1| CMP/dCMP deaminase zinc-binding [Afipia sp. 1NLS2]
 gi|298590968|gb|EFI51170.1| CMP/dCMP deaminase zinc-binding [Afipia sp. 1NLS2]
          Length = 148

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 47/119 (39%), Gaps = 17/119 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA-- 63
           FM  AL+ +   +  +     + C++V DG VI +             HAE+ AL EA  
Sbjct: 6   FMDLALKQAE--IAASGGEVPIGCVVVHDGAVIAQAGNRTLADRDPTAHAEMVALREAAR 63

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
               E       YVTLEPC        CA  I    IRR+     DP       G+++ 
Sbjct: 64  KLGRERLTDCDLYVTLEPC------TMCAGAISHARIRRLYYGALDPKGGAIDSGVRFF 116


>gi|291542828|emb|CBL15938.1| tRNA-adenosine deaminase [Ruminococcus bromii L2-63]
          Length = 152

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 35/100 (35%), Gaps = 15/100 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEARG-----ATAYVTLEPCS 80
            V  +IV++  ++  G            HAE  A+  A ++  G        YVTLEPC 
Sbjct: 25  PVGAVIVRNDEIVATGRNRREQGKNALLHAETDAIYNACQKLGGWRLWNCEIYVTLEPC- 83

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                P CA  II   I +V     D      G       
Sbjct: 84  -----PMCAGAIINAHIPKVYFGAYDLKNGACGTITNLFQ 118


>gi|160887077|ref|ZP_02068080.1| hypothetical protein BACOVA_05093 [Bacteroides ovatus ATCC 8483]
 gi|237721349|ref|ZP_04551830.1| deoxycytidylate deaminase [Bacteroides sp. 2_2_4]
 gi|260171610|ref|ZP_05758022.1| deoxycytidylate deaminase [Bacteroides sp. D2]
 gi|293369429|ref|ZP_06616014.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides ovatus SD CMC 3f]
 gi|299148576|ref|ZP_07041638.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
           3_1_23]
 gi|315919924|ref|ZP_07916164.1| deoxycytidylate deaminase [Bacteroides sp. D2]
 gi|156107488|gb|EDO09233.1| hypothetical protein BACOVA_05093 [Bacteroides ovatus ATCC 8483]
 gi|229449145|gb|EEO54936.1| deoxycytidylate deaminase [Bacteroides sp. 2_2_4]
 gi|292635596|gb|EFF54103.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides ovatus SD CMC 3f]
 gi|298513337|gb|EFI37224.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
           3_1_23]
 gi|313693799|gb|EFS30634.1| deoxycytidylate deaminase [Bacteroides sp. D2]
          Length = 149

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 55/157 (35%), Gaps = 38/157 (24%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
             D R++  A  ++            V  LIVKD ++I  G     G P           
Sbjct: 9   ELDKRYIRMASIWAENSYCQRRK---VGALIVKDKMIISDGY---NGTPSGFENVCEDEN 62

Query: 54  --------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  A   +  +   + GAT YVT  PC        CA+ II+ GI+RVV 
Sbjct: 63  NLTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CAKLIIQAGIKRVVY 116

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
                       G++ L + GI V      +      
Sbjct: 117 SEHYRL----EDGIELLKRAGIEVIYTELDDNSSPNK 149


>gi|315305704|ref|ZP_07875310.1| tRNA-specific adenosine deaminase [Listeria ivanovii FSL F6-596]
 gi|313625927|gb|EFR95453.1| tRNA-specific adenosine deaminase [Listeria ivanovii FSL F6-596]
          Length = 84

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 11/81 (13%)

Query: 8  ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
          A FM  AL  +     +      +  ++V DG +IGR      T+     HAE+ A+++A
Sbjct: 4  AFFMQQALEEAEKAREI--GEVPIGAVVVLDGKIIGRAHNLRETSQNAVTHAELLAIQDA 61

Query: 64 GE-----EARGATAYVTLEPC 79
                    GA  YVTLEPC
Sbjct: 62 CNYQNSWRLSGAELYVTLEPC 82


>gi|53711997|ref|YP_097989.1| putative cytosine/adenosine deaminase [Bacteroides fragilis YCH46]
 gi|60680198|ref|YP_210342.1| cytosine deaminase [Bacteroides fragilis NCTC 9343]
 gi|253563968|ref|ZP_04841425.1| cytosine deaminase [Bacteroides sp. 3_2_5]
 gi|265765335|ref|ZP_06093610.1| ComE operon protein 2 [Bacteroides sp. 2_1_16]
 gi|52214862|dbj|BAD47455.1| putative cytosine/adenosine deaminase [Bacteroides fragilis YCH46]
 gi|60491632|emb|CAH06384.1| possible cytosine deaminase [Bacteroides fragilis NCTC 9343]
 gi|251947744|gb|EES88026.1| cytosine deaminase [Bacteroides sp. 3_2_5]
 gi|263254719|gb|EEZ26153.1| ComE operon protein 2 [Bacteroides sp. 2_1_16]
 gi|301161723|emb|CBW21263.1| possible cytosine deaminase [Bacteroides fragilis 638R]
          Length = 145

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 54/146 (36%), Gaps = 17/146 (11%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
            D+ FM  AL  +    G     P V  ++V    +I R      T      HAE+QA+ 
Sbjct: 3   DDSYFMKQALIEAVKA-GERGEVP-VGAVVVCKERIIARAHNLTETLNDVTAHAEMQAIT 60

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A     G+     T YVT+EPC        CA  I      ++V   +D          
Sbjct: 61  AAANVLGGKYLNECTLYVTVEPC------VMCAGAIAWAQTGKLVFGAEDDKRGYQRYAP 114

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYL 142
           Q L  K ++V  ++  E    +  + 
Sbjct: 115 QALHPKTVVVKGILADECAGLMKDFF 140


>gi|322433246|ref|YP_004210467.1| CMP/dCMP deaminase zinc-binding protein [Acidobacterium sp.
           MP5ACTX9]
 gi|321165638|gb|ADW71340.1| CMP/dCMP deaminase zinc-binding protein [Acidobacterium sp.
           MP5ACTX9]
          Length = 168

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 16/113 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQAL 60
           + D  FM+AAL  +R     T     V C++V++G ++      G   +    HAE+  +
Sbjct: 4   AKDLTFMAAALEQARIGQ-ETPGGAQVGCVLVENGAIVCSSFNEGDLQFDPTAHAEMVGI 62

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
               +E      +G T Y TL+PC        C    +  G+ R+V      D
Sbjct: 63  RRLCKERRSISLKGVTVYCTLQPCGM------CTMACLWAGVSRIVYGASRND 109


>gi|225017029|ref|ZP_03706221.1| hypothetical protein CLOSTMETH_00951 [Clostridium methylpentosum
           DSM 5476]
 gi|224950196|gb|EEG31405.1| hypothetical protein CLOSTMETH_00951 [Clostridium methylpentosum
           DSM 5476]
          Length = 241

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 86/240 (35%), Gaps = 32/240 (13%)

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS--DAILVGIGT 199
           + R   +R  +   +  S D  I  A  G+ P T    K     LR      A L G  T
Sbjct: 1   MGRNKMERPFVVCHMLTSLDGKIDGAFFGA-PKTVPALKIYGD-LRGFYGCQATLYGTTT 58

Query: 200 VLA--DDPELTCRLNGLQEH-------SPM-------RIILDPHFKLSLDSKII--KTAL 241
           +L    D  +T  L+   ++       +P+        + +DP  +L+  S  I  K   
Sbjct: 59  MLGGYSDGRVT-HLSASPQNLLKEDWVNPVGKAMGSFIVSVDPKGELAFSSHAIEKKGRP 117

Query: 242 LAPVI-IVTENDDPVLALAFRKKNINIIYCDCRDL--KKLLTILVGR-GVTSLLVEGGAA 297
            + VI  +TE   P   +  +K+ I+ ++     L    LL  L     +  L+V GG  
Sbjct: 118 ASHVIEALTEQASPEYLVYLQKQGISYLFAGKERLDCALLLKKLRSLFDIKKLMVAGGGT 177

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCL 352
              SF++  L+D + L  + +  G     S  E      +     F          DV  
Sbjct: 178 ANWSFLSEGLIDELSLVIAPVADGSTTAVSIFERADFLPDHGPVAFRLKEVKALEDDVLW 237


>gi|110801187|ref|YP_695768.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens ATCC 13124]
 gi|168215286|ref|ZP_02640911.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens CPE str. F4969]
 gi|110675834|gb|ABG84821.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens ATCC 13124]
 gi|170713327|gb|EDT25509.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens CPE str. F4969]
          Length = 166

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 53/148 (35%), Gaps = 33/148 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
           S+D  FM  AL  ++        N  V   IV  D  ++G G                  
Sbjct: 10  SWDEYFMGVALISAKRSK---DPNTQVGACIVDNDNKIVGIGYNGFPKGCSDDDLPWGNK 66

Query: 47  -----TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                T Y    HAE+ A L   G+  +    Y TL PC+       CA+ II+ GI  V
Sbjct: 67  GDFLETKYPYACHAELNAILNSTGKNVKNCRVYATLFPCNE------CAKAIIQAGITEV 120

Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           +   D        +  +++  K  +  R
Sbjct: 121 IYLSDKYKDTDIVKASKFMFDKANVKYR 148


>gi|90422427|ref|YP_530797.1| CMP/dCMP deaminase, zinc-binding [Rhodopseudomonas palustris
           BisB18]
 gi|90104441|gb|ABD86478.1| tRNA-adenosine deaminase [Rhodopseudomonas palustris BisB18]
          Length = 148

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 50/121 (41%), Gaps = 17/121 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEA-- 63
           FM  AL+ +       +    + C+IV +  VI     R +T      HAEV A+ +A  
Sbjct: 6   FMDLALKAAETAQN--AGEVPIGCVIVLNNAVIASAGNRTLTDRDPTAHAEVLAIRQAAA 63

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
               E   G   YVTLEPC        CA  I    IRR+     DP       G+++ +
Sbjct: 64  ALGSERLSGCDLYVTLEPC------TMCAGAISFARIRRLYYGAADPKGGAVESGVRFFA 117

Query: 121 Q 121
           Q
Sbjct: 118 Q 118


>gi|117928582|ref|YP_873133.1| deaminase-reductase domain-containing protein [Acidothermus
           cellulolyticus 11B]
 gi|117649045|gb|ABK53147.1| bifunctional deaminase-reductase domain protein [Acidothermus
           cellulolyticus 11B]
          Length = 249

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 52/161 (32%), Gaps = 8/161 (4%)

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
                    +   +  S D         + P+     +  + LLRA +D +LVG  T   
Sbjct: 22  CYAYPDERWLRGNMIASLDG-AATVDGRAGPLGNTADQWMLALLRALADVVLVGAATAEI 80

Query: 203 D--DPELTCRLNGLQEH----SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
           +   P    R           SP+  I+    +L +  ++  +     VI  T       
Sbjct: 81  EGYRPI-QIREEFASLRRDRPSPVTAIVSRTLRLDVTGRLFTSGARPLVITCTSAPARAR 139

Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                  +I +   +  DL   +  L  RG   LL EGG  
Sbjct: 140 HQLADVADIVVAGDETVDLHHAVRELADRGHRRLLCEGGPR 180


>gi|296199377|ref|XP_002747141.1| PREDICTED: tRNA-specific adenosine deaminase 2-like [Callithrix
           jacchus]
          Length = 191

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 45/126 (35%), Gaps = 23/126 (18%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
            ++M  A+  ++  +  T     V CL+V +  V+G+G            HAE+ A+++ 
Sbjct: 23  EKWMEEAMHMAKEALENTEV--PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQV 80

Query: 64  -----------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
                       E       YVT+EPC        CA  +    I  VV    +      
Sbjct: 81  LDWCGRSGKNSSEVFEHTVLYVTVEPCIM------CAAALRLMKIPLVVYGCQNERFGGC 134

Query: 113 GRGLQW 118
           G  L  
Sbjct: 135 GSVLNI 140


>gi|12060484|dbj|BAB20627.1| hypothetical protein [Thermosynechococcus elongatus]
          Length = 105

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 20/109 (18%)

Query: 1   MPVSSFD--ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCP 53
           +P+S  D    +M  A+  +    G     P V  +IV  +  +I  G            
Sbjct: 5   LPLSETDPHDFWMQQAIALAEQA-GAADEVP-VGAVIVSAENELIATGENRRQRDHDPTA 62

Query: 54  HAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
           HAE+ AL  AG+        G   YVTLEPC      P CA  I++  I
Sbjct: 63  HAEIIALRRAGQRLGTWYLTGCRLYVTLEPC------PMCAGAIVQARI 105


>gi|260655489|ref|ZP_05860977.1| deoxycytidylate deaminase [Jonquetella anthropi E3_33 E1]
 gi|260629937|gb|EEX48131.1| deoxycytidylate deaminase [Jonquetella anthropi E3_33 E1]
          Length = 180

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 56/172 (32%), Gaps = 43/172 (25%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
            +D+ FM  AL  +     L      V  +IV+ G VI  G                   
Sbjct: 7   DWDSYFMMLALVAATRSTCLRR---RVGAVIVRHGQVISTGYNGAPRGTPHCSETGCLRA 63

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE+ A+  A   G        Y T  PC        C++ +I 
Sbjct: 64  QLGIPSGQKHELCRGSHAEMNAIALAASQGVVTDDGELYCTHSPCVF------CSKALIN 117

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQV 146
            GIRRVV     PD      G+Q   Q G++ ++  + +    L      + 
Sbjct: 118 AGIRRVVYLQGYPD----ELGVQLREQAGVVTEQFPKEKYDHILSCLYFAEH 165


>gi|51248026|pdb|1WKQ|A Chain A, Crystal Structure Of Bacillus Subtilis Guanine Deaminase.
           The First Domain-Swapped Structure In The Cytidine
           Deaminase Superfamily
 gi|51248027|pdb|1WKQ|B Chain B, Crystal Structure Of Bacillus Subtilis Guanine Deaminase.
           The First Domain-Swapped Structure In The Cytidine
           Deaminase Superfamily
          Length = 164

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 42/115 (36%), Gaps = 16/115 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA 63
             F+  A+  +   V      P    +IVKDG +I  G     T+     HAEV A+ +A
Sbjct: 12  ETFLKRAVTLACEGVNAGIGGP-FGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKA 70

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            +     +      Y + EPC      P C   I     + V    +  D   +G
Sbjct: 71  CKVLGAYQLDDCILYTSCEPC------PMCLGAIYWARPKAVFYAAEHTDAAEAG 119


>gi|291515202|emb|CBK64412.1| Deoxycytidylate deaminase [Alistipes shahii WAL 8301]
          Length = 145

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 56/147 (38%), Gaps = 32/147 (21%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----------------TAY 49
            D R++  A   S W          V  LIVKD ++I  G                    
Sbjct: 11  LDMRYLRMA---SIWAENSYCVRRKVGALIVKDKMIISDGYNGTPSGFENVCEDDEGHTK 67

Query: 50  GGCPHAEVQALEEAGEEAR---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               HAE  A+ +  + A    G+T Y+T  PC        C++ II+ GIRRVV   D 
Sbjct: 68  PYVLHAEANAITKVAKSANNCDGSTLYITAAPCIE------CSKLIIQAGIRRVVYSEDY 121

Query: 107 PDVRVSGRGLQWLSQKGIIVDRMMESE 133
                S  GL  L + GI   +   +E
Sbjct: 122 R----SEEGLNLLRRVGIECVQYELNE 144


>gi|58268162|ref|XP_571237.1| tRNA specific adenosine deaminase [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134113420|ref|XP_774735.1| hypothetical protein CNBF4140 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257379|gb|EAL20088.1| hypothetical protein CNBF4140 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57227472|gb|AAW43930.1| tRNA specific adenosine deaminase, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 239

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/253 (20%), Positives = 79/253 (31%), Gaps = 37/253 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE----E 62
           M  AL  +     LT+    V C+ VK G  I R             HAE++A++     
Sbjct: 1   MREALIMAEEA--LTNDEVPVGCVFVKGGQAIARARNRTNEWRNATLHAELEAIDHLLPS 58

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ- 121
                   T YVT+EPC        CA  + + GI RVV    +      G  +   +  
Sbjct: 59  HPAPLSTITLYVTVEPC------VMCASALRQVGIGRVVYGCGNDRFGGCGSVIPVNNSP 112

Query: 122 ------KGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
                   + V      E  + L  +   Q         K        I      +    
Sbjct: 113 RLDSHPAYVAVGGFYREEAIMLLRRFYMSQNPNAPKPKKKATRVLKTDIPPPPSRNTTPQ 172

Query: 176 GFISKNQVHLLRA---QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
                + V   R     +DA   G  T     P L+   N L+E     ++ D      +
Sbjct: 173 SSRPSSTVPSQRRPVPSTDASTTGTST-----PILSEGENKLREQ----VMRDDGL--PI 221

Query: 233 DSKIIKTALLAPV 245
            S ++ T    PV
Sbjct: 222 GSTMVSTPNETPV 234


>gi|53712925|ref|YP_098917.1| cytidine/deoxycytidylate deaminase [Bacteroides fragilis YCH46]
 gi|60681139|ref|YP_211283.1| putative nucleotide deaminase [Bacteroides fragilis NCTC 9343]
 gi|253563096|ref|ZP_04840553.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 3_2_5]
 gi|265763023|ref|ZP_06091591.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 2_1_16]
 gi|52215790|dbj|BAD48383.1| cytidine/deoxycytidylate deaminase [Bacteroides fragilis YCH46]
 gi|60492573|emb|CAH07345.1| putative nucleotide deaminase [Bacteroides fragilis NCTC 9343]
 gi|251946872|gb|EES87154.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 3_2_5]
 gi|263255631|gb|EEZ26977.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 2_1_16]
 gi|301162628|emb|CBW22175.1| putative nucleotide deaminase [Bacteroides fragilis 638R]
          Length = 155

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 17/113 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
              M  A+  SR +V           +I KDG ++  GV           HAEV A+  A
Sbjct: 4   EELMRKAIELSRENVANGGG--PFGAVIAKDGEIVATGVNRVTASCDPTAHAEVSAIRAA 61

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
             +       G   Y + EPC      P C   I    + ++    +  D + 
Sbjct: 62  ASKLGTFNLSGYEIYTSCEPC------PMCLGAIYWARLDKMYYGNNKTDAKN 108


>gi|270294283|ref|ZP_06200485.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275750|gb|EFA21610.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 152

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 56/153 (36%), Gaps = 38/153 (24%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
              + D R++  A  ++            V  LIVKD ++I  G     G P        
Sbjct: 8   KQEALDRRYIRMASIWAENSYCQRR---QVGALIVKDKMIISDGY---NGTPSGFENVCE 61

Query: 54  -----------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                      HAE  A   +  +   + GAT YVT  PC        C++ II+ GI+R
Sbjct: 62  DENNVTKPYVLHAEANAITKIARSNNSSNGATMYVTASPCIE------CSKLIIQAGIKR 115

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
           VV             G++ L + GI V  +   
Sbjct: 116 VVYSEKYRL----EDGIELLKRAGIEVVFISMD 144


>gi|167616051|ref|ZP_02384686.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
          Bt4]
          Length = 50

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%)

Query: 2  PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY 49
            S  D   M+ ALR +   +  T  NP V C+I +    +G G    
Sbjct: 3  TFSDIDRMHMAHALRLAEQGLYTTHPNPRVGCVIARGAQTLGAGWHRR 50


>gi|160890970|ref|ZP_02071973.1| hypothetical protein BACUNI_03415 [Bacteroides uniformis ATCC 8492]
 gi|317481497|ref|ZP_07940562.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides sp. 4_1_36]
 gi|156859191|gb|EDO52622.1| hypothetical protein BACUNI_03415 [Bacteroides uniformis ATCC 8492]
 gi|316902343|gb|EFV24232.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides sp. 4_1_36]
          Length = 153

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 56/153 (36%), Gaps = 38/153 (24%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
              + D R++  A  ++            V  LIVKD ++I  G     G P        
Sbjct: 9   KQEALDRRYIRMASIWAENSYCQRR---QVGALIVKDKMIISDGY---NGTPSGFENVCE 62

Query: 54  -----------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                      HAE  A   +  +   + GAT YVT  PC        C++ II+ GI+R
Sbjct: 63  DENNVTKPYVLHAEANAITKIARSNNSSNGATMYVTASPCIE------CSKLIIQAGIKR 116

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
           VV             G++ L + GI V  +   
Sbjct: 117 VVYSEKYRL----EDGIELLKRAGIEVVFISMD 145


>gi|325286502|ref|YP_004262292.1| CMP/dCMP deaminase zinc-binding protein [Cellulophaga lytica DSM
           7489]
 gi|324321956|gb|ADY29421.1| CMP/dCMP deaminase zinc-binding protein [Cellulophaga lytica DSM
           7489]
          Length = 146

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 55/146 (37%), Gaps = 38/146 (26%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
           +D  ++  A     W          V  +IVKD ++I  G     G P            
Sbjct: 15  YDEAYLRMAQE---WGKLSYCKRKQVGAIIVKDRMIISDGY---NGTPTGFENICEDEEG 68

Query: 54  -------HAEVQALEEAGEEAR---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A+ +     +   GAT Y+TL PC        C++ I + GI RVV  
Sbjct: 69  YTKWYVLHAEANAISKVASSTQSCTGATLYITLSPCKE------CSKLIHQSGIVRVVY- 121

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRM 129
               +      GL++L + GI +  +
Sbjct: 122 ---QNAYKDDSGLKFLEKAGIKLTHL 144


>gi|238026935|ref|YP_002911166.1| CMP/dCMP deaminase, zinc-binding [Burkholderia glumae BGR1]
 gi|237876129|gb|ACR28462.1| CMP/dCMP deaminase, zinc-binding [Burkholderia glumae BGR1]
          Length = 202

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 59/182 (32%), Gaps = 22/182 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGG---CPHAEV 57
           P +  D RFM      +       +    V  ++V+   VI RG      G     HAE+
Sbjct: 27  PGAERDRRFMRL--ALAAADAARAAGEVPVGAVLVRGDQVIARGFNHPISGHDPSAHAEM 84

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL EA          G   YVTLEPC        C+  I+   I RVV    DP     
Sbjct: 85  AALREAAHTLGNYRLPGCELYVTLEPCLM------CSGAIMHARIARVVYGAADPKTGAC 138

Query: 113 GRGLQ-----WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA 167
           G  +       L+    +   ++  E    L A+   +           A S       A
Sbjct: 139 GSVVDAFANPQLNHHTSVTGGVLADECGHTLRAFFAERRRAAREARRARAASAGACDSAA 198

Query: 168 GC 169
             
Sbjct: 199 PG 200


>gi|310779654|ref|YP_003967987.1| CMP/dCMP deaminase zinc-binding protein [Ilyobacter polytropus DSM
           2926]
 gi|309748977|gb|ADO83639.1| CMP/dCMP deaminase zinc-binding protein [Ilyobacter polytropus DSM
           2926]
          Length = 165

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 57/152 (37%), Gaps = 33/152 (21%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV-------------TAYGG 51
           +D  FM  AL  ++        +  V   IV K+  ++G G                  G
Sbjct: 11  WDEYFMGIALLSAKRSK---DPSTQVGACIVNKENKIVGVGYNGFPKGCSDDNFPWDREG 67

Query: 52  C---------PHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                      HAE  A+  + ++    T YV L PC        CA+ II+ GI+ VV 
Sbjct: 68  EFLETKYPFVMHAEQNAILNSIKKLSDCTIYVGLFPCHE------CAKSIIQSGIKEVVF 121

Query: 103 CVDDPDVRVSGRGLQWLSQ-KGIIVDRMMESE 133
             D  D   S +  + +    G++  ++  SE
Sbjct: 122 LSDKYDGTDSNKASKMMFDSSGVVYRKLNLSE 153


>gi|191638477|ref|YP_001987643.1| ComE operon protein 2 [Lactobacillus casei BL23]
 gi|227535031|ref|ZP_03965080.1| competence protein ComEB [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|239631434|ref|ZP_04674465.1| ComE operon protein 2 [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301066532|ref|YP_003788555.1| comE operon protein 2 [Lactobacillus casei str. Zhang]
 gi|190712779|emb|CAQ66785.1| ComE operon protein 2 [Lactobacillus casei BL23]
 gi|227187346|gb|EEI67413.1| competence protein ComEB [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|239525899|gb|EEQ64900.1| ComE operon protein 2 [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300438939|gb|ADK18705.1| ComE operon protein 2 [Lactobacillus casei str. Zhang]
 gi|327382511|gb|AEA53987.1| Transcriptional regulator, TetR family protein [Lactobacillus casei
           LC2W]
 gi|327385708|gb|AEA57182.1| Transcriptional regulator, TetR family protein [Lactobacillus casei
           BD-II]
          Length = 153

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 52/137 (37%), Gaps = 31/137 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP---------- 53
           S+D  F+  A + S      T    +V  ++V++  +I  G   A  G P          
Sbjct: 16  SWDQYFLELAEKVSERS---TCERATVGAVLVQEHRIIATGYNGAISGDPHCDEAGHLMR 72

Query: 54  --------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE+ A+      G    GAT YV   PC +      C + +I+ GI+RVV 
Sbjct: 73  DGHCIRTIHAEMNAIIQCAANGVSTHGATVYVNFFPCLN------CTKALIQAGIKRVVY 126

Query: 103 CVDDPDVRVSGRGLQWL 119
             D  +       L+  
Sbjct: 127 AQDYRNDPYGEALLKQH 143


>gi|146341264|ref|YP_001206312.1| putative cytidine/deoxycytidylate deaminase [Bradyrhizobium sp.
           ORS278]
 gi|146194070|emb|CAL78088.1| putative cytidine/deoxycytidylate deaminase [Bradyrhizobium sp.
           ORS278]
          Length = 165

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 16/120 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAE 56
           MP    D  FM  A++ +       + +P + C+IV    ++               HAE
Sbjct: 1   MPNLKTDEHFMQEAIKIATQDGADPALSP-IGCVIVLGSDIVAAERNHVAAKHDATAHAE 59

Query: 57  VQALEEAG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           ++A+  AG      E RGAT Y TL+PC        C    I   + R+V      DV  
Sbjct: 60  IEAIRAAGRGFDDGELRGATLYTTLQPCGM------CTMASIWSKVGRIVYGAGRDDVHQ 113


>gi|199598395|ref|ZP_03211814.1| ComE operon protein 2 [Lactobacillus rhamnosus HN001]
 gi|258508483|ref|YP_003171234.1| CMP/dCMP deaminase [Lactobacillus rhamnosus GG]
 gi|199590714|gb|EDY98801.1| ComE operon protein 2 [Lactobacillus rhamnosus HN001]
 gi|257148410|emb|CAR87383.1| CMP/dCMP deaminase, zinc-binding protein [Lactobacillus rhamnosus
           GG]
 gi|259649793|dbj|BAI41955.1| competence protein [Lactobacillus rhamnosus GG]
          Length = 154

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 51/143 (35%), Gaps = 33/143 (23%)

Query: 5   SFDARFMSAALRFSRW-HVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP--------- 53
           S+D  F    L  ++      T    +V  ++V++  +I  G   A  G P         
Sbjct: 16  SWDHYF----LELAKKVSERSTCERATVGAVLVQEHRIIATGYNGAISGDPHCDEAGHLM 71

Query: 54  ---------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                    HAE+ A+      G    GAT YV   PC +      C + +I+ GI+RVV
Sbjct: 72  RDGHCIRTIHAEMNAIIQCAANGVSTHGATVYVNFFPCLN------CTKALIQAGIKRVV 125

Query: 102 VCVDDPDVRVSGRGLQWLSQKGI 124
              D  +       L       +
Sbjct: 126 YAHDYRNDPYGETLLAQHHVAVV 148


>gi|298207386|ref|YP_003715565.1| cytidine/deoxycytidylate deaminase family protein [Croceibacter
           atlanticus HTCC2559]
 gi|83850022|gb|EAP87890.1| cytidine/deoxycytidylate deaminase family protein [Croceibacter
           atlanticus HTCC2559]
          Length = 143

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 36/148 (24%)

Query: 9   RFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53
           ++  A LR +R W          V  LIVKD ++I  G     G P              
Sbjct: 8   KYDKAYLRIAREWGQLSHCKRKQVGALIVKDRMIISDGY---NGTPTGFENYCEDDEGYT 64

Query: 54  -----HAEVQA-LEEAG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE  A L+ AG  +  R AT Y+T+ PC        C++ I + GI+RVV   D
Sbjct: 65  KWYVLHAEANAILKVAGSTQSCRDATLYITMSPC------KDCSKLIHQSGIKRVVYQHD 118

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESE 133
             D      GL++L + G++++ +   +
Sbjct: 119 YKD----NSGLKFLEKAGVLIEHISNPD 142


>gi|160931212|ref|ZP_02078614.1| hypothetical protein CLOLEP_00049 [Clostridium leptum DSM 753]
 gi|156869767|gb|EDO63139.1| hypothetical protein CLOLEP_00049 [Clostridium leptum DSM 753]
          Length = 163

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 19/126 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEARG-----ATAYVTLEPCS 80
            V  +IVKDG++I  G            HAE++A++ A +   G        YVTLEPC 
Sbjct: 32  PVGAVIVKDGVLISAGRNRRELGKNALYHAELEAIDGACKALGGWRLWQCDLYVTLEPC- 90

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS----QKGIIVDRMMESEGKI 136
                P C   II   IRR+     DP     G  +         K  ++  ++E     
Sbjct: 91  -----PMCTGAIINARIRRLCYGAKDPKAGSCGSVVNLFELPYNHKPQVISGVLEEACAE 145

Query: 137 FLHAYL 142
            L  + 
Sbjct: 146 RLSGFF 151


>gi|167760281|ref|ZP_02432408.1| hypothetical protein CLOSCI_02654 [Clostridium scindens ATCC 35704]
 gi|167662164|gb|EDS06294.1| hypothetical protein CLOSCI_02654 [Clostridium scindens ATCC 35704]
          Length = 164

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 59/161 (36%), Gaps = 35/161 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
           S+D  FM  A+      +     N  V C IV +D  ++  G                  
Sbjct: 12  SWDEYFMGVAM---LSGMRSKDPNTQVGCCIVSQDNKILSMGYNGLPMGCSDDEFPWVRE 68

Query: 47  ------TAYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    H+E+ A+    G    GA  YV+L PC+       CA+ II+ GI+ 
Sbjct: 69  GDDPLETKYVYTVHSELNAILNYRGGSLEGAKLYVSLFPCNE------CAKAIIQSGIKE 122

Query: 100 VVV-CVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
           V+  C    D       ++     G+   +   ++ +I + 
Sbjct: 123 VIYDCNKYEDTSSVKASMRMFDAAGVNYHQYHRTQREITIR 163


>gi|187250528|ref|YP_001875010.1| cytosine/adenosine deaminase [Elusimicrobium minutum Pei191]
 gi|186970688|gb|ACC97673.1| Cytosine/adenosine deaminase [Elusimicrobium minutum Pei191]
          Length = 163

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 16/110 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
           +F+ AA++ +   V      P    +IVKDG ++ +G            HAEV A+ +A 
Sbjct: 12  KFLRAAVKMAEKGVKAGKGGP-FGAVIVKDGKMVAKGYNRVTSSNDPSLHAEVDAIRKAC 70

Query: 65  EE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           ++       G   Y + EPC      P C   I     + +    D    
Sbjct: 71  KKLGSFELTGCIIYSSCEPC------PMCLGAIYWARPKALYFAADKHTA 114


>gi|310826939|ref|YP_003959296.1| hypothetical protein ELI_1347 [Eubacterium limosum KIST612]
 gi|308738673|gb|ADO36333.1| hypothetical protein ELI_1347 [Eubacterium limosum KIST612]
          Length = 159

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 52/148 (35%), Gaps = 34/148 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-------------TAYG 50
           S+D  FM  AL  ++           V   IV  D  ++  G                  
Sbjct: 8   SWDEYFMGIALLAAKRSK---DPGTQVGACIVSPDNKILTMGYNGMPTGCHDDNMPWERE 64

Query: 51  GCP---------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           G P         HAE  A L   G   +GAT Y TL PC+       CA+ II+ GI++V
Sbjct: 65  GDPLETKYLYVCHAEFNAILNNGGRSLKGATLYATLFPCNE------CAKAIIQSGIQKV 118

Query: 101 VVCVDDP-DVRVSGRGLQWLSQKGIIVD 127
           +   D   D        +     GI  +
Sbjct: 119 IYMEDKYADTDAVIASKRMFDMVGITYE 146


>gi|110801506|ref|YP_698456.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens SM101]
 gi|110682007|gb|ABG85377.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           perfringens SM101]
          Length = 166

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 46/128 (35%), Gaps = 33/128 (25%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
           S+D  FM  AL  ++        N  V   IV  D  ++G G                  
Sbjct: 10  SWDEYFMGVALISAKRSK---DPNTQVGACIVDNDNKIVGIGYNGFPKGCSDDDLPWGNK 66

Query: 47  -----TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                T Y    HAE+ A L   G+  +    Y TL PC+       CA+ II+ GI  V
Sbjct: 67  GEFLETKYPYACHAELNAILNSTGKNVKNCRVYATLFPCNE------CAKAIIQAGITEV 120

Query: 101 VVCVDDPD 108
           +   D   
Sbjct: 121 IYLSDKYK 128


>gi|126653720|ref|ZP_01725638.1| cytidine/deoxycytidylate deaminase family protein; probable guanine
           deaminase [Bacillus sp. B14905]
 gi|126589684|gb|EAZ83820.1| cytidine/deoxycytidylate deaminase family protein; probable guanine
           deaminase [Bacillus sp. B14905]
          Length = 132

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 37/104 (35%), Gaps = 16/104 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             FM  AL  +  +       P    L+VK+G +I  GV           HAE+QA+ +A
Sbjct: 4   HEFMRKALDLANENALSEHGAP-FGALVVKNGQIISSGVNEVAKTNDLTNHAEIQAIRQA 62

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                     G   Y + EPC      P C   I    +  V  
Sbjct: 63  CHTLQTINLEGCEMYASTEPC------PMCLSAIYYAKLTTVYY 100


>gi|302918078|ref|XP_003052581.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256733521|gb|EEU46868.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 167

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 54/146 (36%), Gaps = 22/146 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVT-AYGGCPHAEVQALEEAG 64
             FM  AL  +        TN  V  LIV+  D  +I  G T    G  HAE   L +  
Sbjct: 10  KAFMQRALGQA-NSSPPKPTNFRVGALIVRLDDNTIIAEGYTLELPGNTHAEECCLLKLA 68

Query: 65  EEARGAT-------------AYVTLEPC-SHYGRSPPCAQFIIECG--IRRVVVCVDDPD 108
           E+  G T              Y T+EPC        PC + ++     I +V V V +P+
Sbjct: 69  EQ-HGTTEEKLSEVFNTPHALYTTVEPCFKRLSGKLPCVERVLRQKQWINKVYVGVQEPE 127

Query: 109 VRVSGRGLQW-LSQKGIIVDRMMESE 133
             V     +  L   GI V  +   E
Sbjct: 128 TFVGENTGRKTLQDAGIEVHLVSGLE 153


>gi|116051489|ref|YP_789678.1| hypothetical protein PA14_19210 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296388013|ref|ZP_06877488.1| hypothetical protein PaerPAb_07654 [Pseudomonas aeruginosa PAb1]
 gi|115586710|gb|ABJ12725.1| putative dihydrofolate reductase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 180

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 68/205 (33%), Gaps = 43/205 (20%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS---DAILVGIGTVLADDPE 206
            H+T  +A S D  I         +  F      H  ++     D +L+G GT       
Sbjct: 3   PHLTYYVAASLDGFIARPDGSVDWLDRFAEGGNDHGYKSFYQGIDGLLMGRGT------- 55

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
                           I+          K        P  ++T N     A     +++ 
Sbjct: 56  --------------YDIVRGFGDWPYPGK--------PCQVLTRNPQESAAEGVELRHVT 93

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
                    ++ L  L  +G   + + GG ++A S + + L+D +I+     ++G G   
Sbjct: 94  --------PQEGLARLGEQGCRRIWLAGGGSLAGSCLAAGLLDEVIVSVIPQLLGAG--- 142

Query: 327 SPLEEGYLEKNFMCVRRDYFGSDVC 351
            PL  G  E+    + +  + S + 
Sbjct: 143 IPLFAGGRERRLQLLEQHGYNSGIV 167


>gi|300858611|ref|YP_003783594.1| hypothetical protein cpfrc_01194 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686065|gb|ADK28987.1| hypothetical protein cpfrc_01194 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206323|gb|ADL10665.1| Riboflavin biosynthesis protein RibD C-terminal domain protein
           [Corynebacterium pseudotuberculosis C231]
 gi|302330880|gb|ADL21074.1| Riboflavin biosynthesis protein RibD C-terminal domain protein
           [Corynebacterium pseudotuberculosis 1002]
 gi|308276565|gb|ADO26464.1| Riboflavin biosynthesis protein RibD C-terminal domain protein
           [Corynebacterium pseudotuberculosis I19]
          Length = 265

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 62/151 (41%), Gaps = 18/151 (11%)

Query: 187 RAQSDAILVGIGTVLADD---PELTC-----RLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
           RA SD ++V   TV A+      L+      R    Q+  P   I+        DS + +
Sbjct: 68  RAWSDLVMVTSATVKAESYGAVSLSSEAQLERKTRGQDPLPTLGIVSHSLDFPDDSIVFE 127

Query: 239 TALLAPVIIVTEN---DDPVLALAFRK---KNINIIYCDCRD----LKKLLTILVGRGVT 288
            +    ++++TE     D   A  +R+     ++I+          L+  LT L   G  
Sbjct: 128 PSTRDFLLVITEKVDKHDAQRAHRYRQLLDAGVSILSVSDLSTPSGLQSALTSLRKSGFA 187

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
            +  EGG ++    + ++L+D + L  + ++
Sbjct: 188 RISCEGGPSLYRKLLEAQLIDILHLTIAPVI 218


>gi|222147690|ref|YP_002548647.1| cytidine and deoxycytidylate deaminase [Agrobacterium vitis S4]
 gi|221734678|gb|ACM35641.1| cytidine and deoxycytidylate deaminase [Agrobacterium vitis S4]
          Length = 149

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 55/148 (37%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA- 63
           RFM  AL  ++   G     P +  ++VK+G+++ R             HAE+ A+  A 
Sbjct: 6   RFMDVALEEAQLA-GARGEVP-IGAVLVKNGVILARAGNETRALQDVTAHAEILAIRRAC 63

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW- 118
                E   GA  YVTLEPC        CA  I    IRR+     D        G ++ 
Sbjct: 64  AILEDERLAGADLYVTLEPC------TMCAAAISFARIRRLYYGAPDEKGGGVDHGARFY 117

Query: 119 ----LSQKGIIVDRMMESEGKIFLHAYL 142
                     +   + E+E    L  + 
Sbjct: 118 SQPTCHHAPDVYAGIGETEAAALLKDFF 145


>gi|78778025|ref|YP_394340.1| guanine deaminase [Sulfurimonas denitrificans DSM 1251]
 gi|78498565|gb|ABB45105.1| Guanine deaminase [Sulfurimonas denitrificans DSM 1251]
          Length = 149

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 40/109 (36%), Gaps = 16/109 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           FM  A++ + + V      P    +IVKDG VI +             HAE++A+ +A +
Sbjct: 6   FMKKAIKEATFGVERGDGGP-FGAVIVKDGKVIAKAHNRVLKLNDATAHAEIEAIRKASK 64

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
                +      Y T  PC      P C   I    I+ V       D 
Sbjct: 65  KLLTYDLSECEIYTTCMPC------PMCMGAIRWANIKSVYFGATSQDA 107


>gi|86139939|ref|ZP_01058504.1| cytosine deaminase [Roseobacter sp. MED193]
 gi|85823357|gb|EAQ43567.1| cytosine deaminase [Roseobacter sp. MED193]
          Length = 147

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 18/153 (11%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQ 58
           +++ D R +  A   ++   G       +  ++ + G V+ +G       G P  H E+ 
Sbjct: 1   MNADDTRLLRIAYEEAK--AGFDEGGCPIGSVLARGGEVVAQGRNQRVQKGDPIAHGEMD 58

Query: 59  ALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           AL +AG +   R  T Y +L PC     +      II+ GI RVV+  +           
Sbjct: 59  ALRKAGRQKTYRDTTLYTSLSPCMMCTGT------IIQFGIPRVVIGENKNFGGNE---- 108

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           ++L  KG+ V    + +    +  ++  + E  
Sbjct: 109 EFLRSKGVEVIVADDPDCIALMRRFIDEEPELW 141


>gi|291455623|ref|ZP_06595013.1| cytidine and deoxycytidylate deaminase family protein
           [Bifidobacterium breve DSM 20213]
 gi|291382551|gb|EFE90069.1| cytidine and deoxycytidylate deaminase family protein
           [Bifidobacterium breve DSM 20213]
          Length = 152

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 55/151 (36%), Gaps = 23/151 (15%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY--GGCP--HAEVQALEEA 63
             M  AL  ++      + +  V  ++V  DG +IGRG       G P  HAE+ A+ EA
Sbjct: 8   EMMHGALELAKRAA--AAGDVPVGAVVVDADGQIIGRGYNTREADGDPLAHAEIIAMREA 65

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T  VTLEPC      P CA   ++  I  +V    D  +   G     
Sbjct: 66  ARALGSWNLSDCTLAVTLEPC------PMCAGACVQTHIGTIVFGAWDSKLGACGSIWDI 119

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYLTR 144
                I     +   + E++ +  L  +   
Sbjct: 120 PRDPHIGHAPEVHGGVAEADCQTLLSTFFAH 150


>gi|2493560|sp|P78594|FCA1_CANAL RecName: Full=Cytosine deaminase; AltName: Full=Cytosine
           aminohydrolase
 gi|1762320|gb|AAC15782.1| cytosine deaminase [Candida albicans]
          Length = 150

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 19/155 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           ++  D + +  AL  ++         P  +C+I  D  V+G+G            H E+ 
Sbjct: 1   MTFDDKKGLQVALDQAKKS-YSEGGIPIGSCIISSDDTVLGQGHNERIQKHSAILHGEMS 59

Query: 59  ALEEAGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           ALE AG       +  T Y TL PCS       C   I+  G +RVV+  +   +     
Sbjct: 60  ALENAGRLPGKTYKDCTIYTTLSPCSM------CTGAILLYGFKRVVMGENVNFLGNE-- 111

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
             + L + G+ V  + + E    +  ++  + +  
Sbjct: 112 --KLLIENGVEVVNLNDQECIDLMAKFIKEKPQDW 144


>gi|305665639|ref|YP_003861926.1| deoxycytidylate deaminase [Maribacter sp. HTCC2170]
 gi|88710395|gb|EAR02627.1| deoxycytidylate deaminase [Maribacter sp. HTCC2170]
          Length = 147

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 60/156 (38%), Gaps = 37/156 (23%)

Query: 1   MPVSSFDARFMSAALRFS-RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------ 53
           M  +    ++  A LR +  W          V  ++VKD ++I  G     G P      
Sbjct: 1   MKKTKQ-EKYDKAYLRMAQEWGKLSFCERKQVGAIVVKDRMIISDGY---NGTPTGFENV 56

Query: 54  -------------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                        HAE  A+     + +   GAT Y+TL PC        C++ I + GI
Sbjct: 57  CEDEEGYTKWYVLHAEANAISKVASSTQSCEGATLYITLSPCRE------CSKLIHQSGI 110

Query: 98  RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
           +RVV           G GL++L + G+ +  M   E
Sbjct: 111 KRVVY----KKAYKDGSGLEFLEKAGVDLVHMPVIE 142


>gi|307721944|ref|YP_003893084.1| CMP/dCMP deaminase zinc-binding protein [Sulfurimonas autotrophica
           DSM 16294]
 gi|306980037|gb|ADN10072.1| CMP/dCMP deaminase zinc-binding protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 145

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 51/146 (34%), Gaps = 37/146 (25%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
            D  F++ A   +     ++     V  +IVKDG ++  G                    
Sbjct: 3   DDKNFINIASEIASASKCVSK---QVGAVIVKDGRILSTGYNGTPAGYTNCCDHWNDEYT 59

Query: 54  ------------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A+      G     AT YVTLEPCS   ++      +I  GI+
Sbjct: 60  KEHHEWSKTYEIHAEMNAIIWAARKGISIEDATIYVTLEPCSECSKN------LIASGIK 113

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGI 124
           R+V   +           ++L   G+
Sbjct: 114 RIVYAKEYEHTHSDIVS-KFLKDNGV 138


>gi|168705456|ref|ZP_02737733.1| cytidine/deoxycytidylate deaminase family protein [Gemmata
           obscuriglobus UQM 2246]
          Length = 167

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 54/158 (34%), Gaps = 23/158 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAY----GGCPHAE 56
           P   F    M  AL  +   V  +     V  LIV     VIG+             HAE
Sbjct: 11  PAHPFHVHHMEMALDEA--AVAASEDEVPVGALIVHPELGVIGQAHNMRERLNDPTAHAE 68

Query: 57  VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ +A    +         YVTLEPC      P CA  I++  +  VV    DP    
Sbjct: 69  MIAITQAATALKSWRLEKCILYVTLEPC------PMCAGGIVQARVPMVVYGCTDPKAGA 122

Query: 112 SGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLTR 144
                Q      L+ +  +V  ++       L  +  R
Sbjct: 123 CHTLFQIASDPRLNHRAQVVGGVLADRCAAALTDFFRR 160


>gi|330805063|ref|XP_003290507.1| hypothetical protein DICPUDRAFT_81234 [Dictyostelium purpureum]
 gi|325079386|gb|EGC32989.1| hypothetical protein DICPUDRAFT_81234 [Dictyostelium purpureum]
          Length = 259

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 43/115 (37%), Gaps = 23/115 (20%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL---- 60
           +FM  A++       L      VAC+IV +  +I RG         G  HAE++A     
Sbjct: 45  KFMKEAVKEGEKA--LKEGEVPVACVIVHNNQIIARGSNKTNIKKNGTRHAELEAFDQIF 102

Query: 61  --EEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
             +E  E  +         YVT+EPC        CA  +    I RV     +  
Sbjct: 103 LNKELNERFKDTLLVECDLYVTVEPCLM------CAGALSLAKINRVFFGCHNDK 151


>gi|260463024|ref|ZP_05811227.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
           opportunistum WSM2075]
 gi|259031145|gb|EEW32418.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
           opportunistum WSM2075]
          Length = 232

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 1/112 (0%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
           + LD   KL      I    +  ++     D  +  LA    +  +      DL  +L +
Sbjct: 89  VALDATGKLHFAKPDIGGDHVVVLLGRDVADSHLAELAADGVSYIVSETPDIDLAAMLEV 148

Query: 282 LV-GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
           L    G+  LL+EGGA +  SF  + LVD + L  +  + G       +E G
Sbjct: 149 LGRELGIRRLLLEGGAGINGSFFAAGLVDELSLLVAPAIDGRAANQGFVEFG 200


>gi|332882408|ref|ZP_08450036.1| ComE operon protein 2 family protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332679792|gb|EGJ52761.1| ComE operon protein 2 family protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 149

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 52/144 (36%), Gaps = 32/144 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC------------ 52
             D R++  A  ++            V  LIVKD ++I  G                   
Sbjct: 10  ELDLRYLRMARIWAENSYCERRK---VGALIVKDKMIISDGYNGTPAGFENVCEDENHLT 66

Query: 53  ----PHAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE  A   +  +G  + GAT YVT  PC        C++ II+ GI+RV     
Sbjct: 67  KPYVLHAEANAITKIARSGNNSEGATLYVTDAPCIE------CSKLIIQSGIKRVFYARQ 120

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRM 129
                    G+  L + GI V  +
Sbjct: 121 YRLT----DGIDLLQRAGIEVHYL 140


>gi|330686098|gb|EGG97719.1| ComE operon protein 2 [Staphylococcus epidermidis VCU121]
          Length = 153

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 52/148 (35%), Gaps = 34/148 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M    ++  FM+ +   +           SV   IVKD  +I  G               
Sbjct: 1   MERIKWEEYFMAQSHLLALRSTCQRL---SVGATIVKDNRIIAGGYNGSVAGEVHCIDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G    GAT YVT  PC +      C + II+ GI+
Sbjct: 58  CLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLN------CTKSIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            +    D  +   +   +Q L Q GI  
Sbjct: 112 TIYYAEDYHNHEYA---MQLLDQSGIEY 136


>gi|289617324|emb|CBI56091.1| unnamed protein product [Sordaria macrospora]
          Length = 168

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 51/145 (35%), Gaps = 20/145 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVT-AYGGCPHAEVQAL---- 60
             +M  AL  ++       TN  V  ++V      ++  G T    G  HAE        
Sbjct: 11  KAYMRLALSLAQKSPPK-PTNYRVGAVVVDVPSNTILATGYTLELEGNTHAEQCCFMKLA 69

Query: 61  --------EEAGEEARGATAYVTLEPCS-HYGRSPPCAQFI--IECGIRRVVVCVDDPDV 109
                   + A         Y T+EPCS     + PC + +  +   I+ V V + +P+ 
Sbjct: 70  QQHGVSEEKLAEVLPSNLALYTTVEPCSKRLSGNLPCVERVLRMAGCIKTVYVGILEPEK 129

Query: 110 RVSGRGLQW-LSQKGIIVDRMMESE 133
            V     +  L   GI V  +   E
Sbjct: 130 FVQENTGRKSLKDAGIEVVHVEGME 154


>gi|157804219|ref|YP_001492768.1| cytosine deaminase [Rickettsia canadensis str. McKiel]
 gi|157785482|gb|ABV73983.1| cytosine deaminase [Rickettsia canadensis str. McKiel]
          Length = 200

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 65/184 (35%), Gaps = 26/184 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTN-PSVACLIVK--DGIVIGRGVT----AYGGCPHAE 56
           +SF+  FM  AL+ +R        N   V  +IV   +  +I               HAE
Sbjct: 9   TSFNNFFMQQALKQARIAF---DKNEVPVGAVIVDRLNQKIIASSYNNTEEKNNALYHAE 65

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +  + EA              YVTLEPC+       CA  I    ++R+   V DP    
Sbjct: 66  IITINEACNIISCKNLNDYDIYVTLEPCAM------CAAAISHSRLKRLFYGVSDPKHGA 119

Query: 112 SGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM 166
               L++ +      +  I   ++  +  + +  +  +      +    +  + +++I +
Sbjct: 120 VESNLRYFNSSACFHRPEIYSGILAEDSGLLMKEFFKKIRTTIPNHGRALLRNSNDVIPV 179

Query: 167 AGCG 170
               
Sbjct: 180 KVGD 183


>gi|251811005|ref|ZP_04825478.1| competence protein ComEB [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805515|gb|EES58172.1| competence protein ComEB [Staphylococcus epidermidis BCM-HMP0060]
 gi|329737260|gb|EGG73514.1| ComE operon protein 2 [Staphylococcus epidermidis VCU028]
          Length = 153

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 53/148 (35%), Gaps = 34/148 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M    ++  FM+ +   +      T    SV   IVKD  +I  G               
Sbjct: 1   MERIKWEEYFMAQSHLLALRS---TCKRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G    GAT YVT  PC +      C + II+ GI+
Sbjct: 58  CLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLN------CTKSIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            +    D  +   +   ++ L Q GI  
Sbjct: 112 TIYYAQDYHNHDYA---IKLLKQSGIEY 136


>gi|256372768|ref|YP_003110592.1| CMP/dCMP deaminase zinc-binding [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256009352|gb|ACU54919.1| CMP/dCMP deaminase zinc-binding [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 156

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 17/128 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQ 58
           +S+ D R++  A   +      T+  P V  ++V+ G V+G      +       HAE+ 
Sbjct: 2   LSADDRRWLDVAFGLAEDAA-RTAEVP-VGAVVVRSGRVLGARHNETIERRSSLAHAELL 59

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL +A  +A      GA  YVTLEPC+       CA  ++    RRVV    DP     G
Sbjct: 60  ALSDALADAGDGYVLGADVYVTLEPCAM------CAGALVLARARRVVFAAWDPKAGACG 113

Query: 114 RGLQWLSQ 121
             +   + 
Sbjct: 114 SLMNIAAD 121


>gi|298481407|ref|ZP_06999599.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
           D22]
 gi|298272271|gb|EFI13840.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
           D22]
          Length = 149

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 54/157 (34%), Gaps = 38/157 (24%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
             D R++  A  ++            V  LIVKD ++I  G     G P           
Sbjct: 9   ELDKRYIRMASIWAENSYCQRRK---VGALIVKDKMIISDGY---NGTPSGFENVCEDEN 62

Query: 54  --------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  A   +  +   + GAT YVT  PC        CA+ II+ GI+RVV 
Sbjct: 63  NLTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CAKLIIQAGIKRVVY 116

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
                       G++ L + GI V             
Sbjct: 117 SEHYRL----EDGIELLKRAGIEVIYTELDNHSSPNK 149


>gi|293608518|ref|ZP_06690821.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829091|gb|EFF87453.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 161

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 23/113 (20%)

Query: 8   ARFMSAALRFSRWHV---GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
            +F+  A+  +  ++   G          ++VK+G +I  GV           HAE+ A+
Sbjct: 6   EQFLRKAIELAYKNIEKGGR-----PFGAVVVKNGEIIASGVNQILVTNDPTAHAELLAI 60

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
             A +        G + Y +  PC      P C   +   GI+ V     + D
Sbjct: 61  RAASQVLGSANLEGCSVYASGHPC------PMCMAAMRLAGIKSVSYAYSNED 107


>gi|254282421|ref|ZP_04957389.1| guanine deaminase [gamma proteobacterium NOR51-B]
 gi|219678624|gb|EED34973.1| guanine deaminase [gamma proteobacterium NOR51-B]
          Length = 155

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 43/125 (34%), Gaps = 24/125 (19%)

Query: 10  FMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
           F+  A++ +        G          +IVK+  +I               HAEV+A+ 
Sbjct: 5   FLHRAIQLASDNIDSGKGG-----PFGAVIVKNNEMIAESANRVLAHSDPTAHAEVEAIR 59

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            AGE     +  G T Y + EPC      P C   I    I  V    D  D   +G   
Sbjct: 60  SAGEALGTFDLSGCTLYASCEPC------PMCLGAIYWARISAVYFAGDRKDAESAGFDD 113

Query: 117 QWLSQ 121
           + +  
Sbjct: 114 KLIYD 118


>gi|15672703|ref|NP_266877.1| hypothetical protein L127182 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281491217|ref|YP_003353197.1| tRNA-specific adenosine deaminase [Lactococcus lactis subsp. lactis
           KF147]
 gi|12723633|gb|AAK04819.1|AE006305_11 conserved hypothetical protein [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281374958|gb|ADA64476.1| tRNA-specific adenosine deaminase [Lactococcus lactis subsp. lactis
           KF147]
 gi|326406265|gb|ADZ63336.1| tRNA-specific adenosine deaminase [Lactococcus lactis subsp. lactis
           CV56]
          Length = 155

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 51/143 (35%), Gaps = 22/143 (15%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE---- 65
           AL+ ++      +    +  +IVKDG +I R             HAEV A+E A +    
Sbjct: 15  ALKEAQKAA--ENEEVPIGVVIVKDGEIIARDFNRRELDGRATHHAEVCAIEAANQAVGN 72

Query: 66  -EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS---- 120
                   +VT+EPC        CA  I    I +V     +P    +    Q L     
Sbjct: 73  WRLLDCALFVTIEPC------VMCAGAIGLARIPQVYFGATNPKFGGTVSLYQILEDKRL 126

Query: 121 -QKGIIVDRMMESEGKIFLHAYL 142
             +  +   ++E E    +  + 
Sbjct: 127 NHRVQVESGILEDECAKIMQDFF 149


>gi|145219369|ref|YP_001130078.1| tRNA-adenosine deaminase [Prosthecochloris vibrioformis DSM 265]
 gi|145205533|gb|ABP36576.1| tRNA-adenosine deaminase [Chlorobium phaeovibrioides DSM 265]
          Length = 153

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 55/147 (37%), Gaps = 23/147 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAY----GGCPHAEVQALEEA-- 63
           M  A R +       S    V  +++  G  V+G+G            HAE+ AL  A  
Sbjct: 8   MELAFREALKA--FESREVPVGAVVLDGGGHVVGKGYNQVEALCDATAHAEMIALTSAMA 65

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-- 118
               +  +  T  VT+EPC      P CA  I+   + RVV    D  +  SG  L    
Sbjct: 66  TLGTKYLQDCTLAVTMEPC------PMCAGAIVNAKVGRVVFGAYDAKMGASGSVLNVTG 119

Query: 119 ---LSQKGIIVDRMMESEGKIFLHAYL 142
              L+ +  +   +ME   +  L  + 
Sbjct: 120 CRPLNHQPEVFGGIMEGRCQGLLQDFF 146


>gi|68172021|ref|ZP_00545314.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88658306|ref|YP_507267.1| cytidine and deoxycytidylate deaminase family protein [Ehrlichia
           chaffeensis str. Arkansas]
 gi|67998558|gb|EAM85318.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88599763|gb|ABD45232.1| cytidine and deoxycytidylate deaminase family protein [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 140

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEE 66
           M  A+  ++  +        V  +IV +  VI       +       HAE+ A+  A + 
Sbjct: 1   MKLAISKAQEDLLEV----PVGAVIVHNNEVISSANNSNIHDIDPTAHAEILAIRNACKI 56

Query: 67  ARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD---VRVSGRGLQW 118
                      YVTLEPC+       CAQ I    IRR+     +     +    R  Q+
Sbjct: 57  LSTHILNQCDIYVTLEPCAM------CAQAISFSKIRRLYFGAYNKKYGAIENGARIFQF 110

Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTR 144
                 +   ++E+E    +  +  +
Sbjct: 111 CHHVPEVYGGILEAENTKLITDFFKK 136


>gi|325680619|ref|ZP_08160161.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Ruminococcus albus 8]
 gi|324107689|gb|EGC01963.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Ruminococcus albus 8]
          Length = 156

 Score = 67.2 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 56/153 (36%), Gaps = 23/153 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAY-GGC---PHAEVQ 58
           + D  +M          +        V  ++VK   G ++GRG      G     HAE+ 
Sbjct: 2   TRDEMYMRK--ALELAALAAEEDEVPVGAVVVKKSTGEIVGRGFNRREYGRSPLTHAEIV 59

Query: 59  ALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+E+A  +  G        +VTLEPC      P CA  +I   + RVV    D      G
Sbjct: 60  AIEQASRKLGGWRLIDCELFVTLEPC------PMCAGAVINSRVERVVFGAYDKKAGSCG 113

Query: 114 RGLQWL----SQKGIIVDRMMESEGKIFLHAYL 142
             +       + K   V  ++E E    L  + 
Sbjct: 114 SVVDLFGLPYNHKPECVGGVLEEECAAALSVFF 146


>gi|253583057|ref|ZP_04860275.1| deoxycytidylate deaminase [Fusobacterium varium ATCC 27725]
 gi|251835263|gb|EES63806.1| deoxycytidylate deaminase [Fusobacterium varium ATCC 27725]
          Length = 163

 Score = 67.2 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 50/146 (34%), Gaps = 33/146 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGV-------------TAYG 50
            +D  FM  AL  ++        N  V   IV +   +IG G                  
Sbjct: 8   EWDEYFMGVALLSAKRSK---DPNTQVGACIVNEERRIIGVGYNGLPKGCSDDEFPWERD 64

Query: 51  GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           G           HAE+ A+  + +  +  T YV L PC        C++ II+ GI+ +V
Sbjct: 65  GEFLDTKYPFVCHAELNAILNSTKTLKNCTLYVALFPCHE------CSKAIIQSGIKELV 118

Query: 102 VCVDDPD-VRVSGRGLQWLSQKGIIV 126
              D     +      + L   G+  
Sbjct: 119 YLSDKYCGTKSDMASKRMLDAAGVKY 144


>gi|228470550|ref|ZP_04055407.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
           uenonis 60-3]
 gi|228307677|gb|EEK16653.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
           uenonis 60-3]
          Length = 155

 Score = 67.2 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 52/148 (35%), Gaps = 17/148 (11%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
            D R M  AL+ +          P +  +I     ++ +             HAE+ A+ 
Sbjct: 11  LDERMMQLALQQA-LVAYEADEVP-IGAVIAVGTRILAKSHNQVELLNDPTAHAEMLAIT 68

Query: 62  EAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           +A     G      T YVT+EPC      P C   +    I R+V    DP         
Sbjct: 69  QATAAIGGKYLPQCTLYVTVEPC------PMCMGALRWTQIGRIVYGAADPKGGYMRYSS 122

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTR 144
                K +++  + E E +  + +Y  R
Sbjct: 123 TLPHPKSVVMGGVCEEECRELMVSYFQR 150


>gi|313812411|gb|EFS50125.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL025PA1]
 gi|327334354|gb|EGE76065.1| tRNA-specific adenosine deaminase [Propionibacterium acnes
           HL097PA1]
          Length = 149

 Score = 67.2 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 50/147 (34%), Gaps = 23/147 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA-- 63
           M+ AL  +R     T  +  +  +I+  +G V+               HAEV A+  A  
Sbjct: 1   MTQALDVARRAA--TWGDVPIGAVILGANGEVLSEAGNERERTGDPTAHAEVLAIRRAAE 58

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G      T  VTLEPC+    +      I+   I RVV    DP           + 
Sbjct: 59  ARDGWRLGDCTLVVTLEPCTMCAGT------IVAARIPRVVFGAFDPKAGAVSSLFDVMR 112

Query: 121 QKGI-----IVDRMMESEGKIFLHAYL 142
              +     +V  +M  E    L  + 
Sbjct: 113 DPRLPHRPKVVTGVMAEESSALLREFF 139


>gi|311030254|ref|ZP_07708344.1| hypothetical protein Bm3-1_06896 [Bacillus sp. m3-13]
          Length = 158

 Score = 67.2 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 38/111 (34%), Gaps = 17/111 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
             F+  A+  +  +V           +I K+  +I  GV      +    HAEV A+ +A
Sbjct: 7   EFFLHRAIDLALQNVQENGG--PFGAVITKNNQIIAEGVNRVTSNHDPTAHAEVMAIRKA 64

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
                  E R    Y + EPC      P C   I    I  V    D  D 
Sbjct: 65  CHSLQTFELRDCILYSSCEPC------PMCLGAIYWARIPTVYFAADRKDA 109


>gi|50513754|pdb|1TIY|A Chain A, X-Ray Structure Of Guanine Deaminase From Bacillus
           Subtilis Northeast Structural Genomics Consortium Target
           Sr160
 gi|50513755|pdb|1TIY|B Chain B, X-Ray Structure Of Guanine Deaminase From Bacillus
           Subtilis Northeast Structural Genomics Consortium Target
           Sr160
          Length = 164

 Score = 67.2 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 42/115 (36%), Gaps = 16/115 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA 63
             F+  A+  +   V      P    +IVKDG +I  G     T+     HAEV A+ +A
Sbjct: 4   ETFLKRAVTLACEGVNAGIGGP-FGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKA 62

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            +     +      Y + EPC      P C   I     + V    +  D   +G
Sbjct: 63  CKVLGAYQLDDCILYTSCEPC------PXCLGAIYWARPKAVFYAAEHTDAAEAG 111


>gi|150021636|ref|YP_001306990.1| CMP/dCMP deaminase, zinc-binding [Thermosipho melanesiensis BI429]
 gi|149794157|gb|ABR31605.1| CMP/dCMP deaminase, zinc-binding [Thermosipho melanesiensis BI429]
          Length = 170

 Score = 67.2 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 53/138 (38%), Gaps = 39/138 (28%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP------- 53
           P  S+D  F+  +L  +      T  +  V  LIVKD  ++  G      G P       
Sbjct: 18  PQKSWDEYFLRISLIIASRS---TCIHRKVGALIVKDKRILSTGYNQPPSGFPHCNNIPC 74

Query: 54  -------------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQF 91
                              HAE  AL +A   G     +T Y+T +PCS       CA+ 
Sbjct: 75  IRDDLRIPSGKNQEICYALHAEQNALMQAAKFGISTNNSTMYITHKPCSV------CARL 128

Query: 92  IIECGIRRVVVCVDDPDV 109
           II  GI+RVV   D PD 
Sbjct: 129 IINAGIKRVVFINDYPDP 146


>gi|89053709|ref|YP_509160.1| CMP/dCMP deaminase, zinc-binding [Jannaschia sp. CCS1]
 gi|88863258|gb|ABD54135.1| CMP/dCMP deaminase zinc-binding protein [Jannaschia sp. CCS1]
          Length = 142

 Score = 67.2 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 47/120 (39%), Gaps = 17/120 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG--VTAYGGCP--HAEVQALEEA--- 63
           M AAL  +R           V  +I ++G +I R    T     P  HAE+ A+  A   
Sbjct: 1   MEAALDQARQAAAR--GEVPVGAVISRNGEIIARAGNRTREDHDPTGHAEILAIRSACAA 58

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
              E   G   +VTLEPC      P CA  I    IRR+     DP      +G +  + 
Sbjct: 59  LQSERLPGCDLWVTLEPC------PACAATISAARIRRLYYAAPDPKSGGIAQGPRIFTH 112


>gi|50843619|ref|YP_056846.1| putative cytidine and deoxycytidylate deaminase [Propionibacterium
           acnes KPA171202]
 gi|50841221|gb|AAT83888.1| putative cytidine and deoxycytidylate deaminase [Propionibacterium
           acnes KPA171202]
 gi|313765224|gb|EFS36588.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL013PA1]
 gi|313771619|gb|EFS37585.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL074PA1]
 gi|313794199|gb|EFS42219.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL110PA1]
 gi|313803320|gb|EFS44516.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL110PA2]
 gi|313808654|gb|EFS47114.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL087PA2]
 gi|313810633|gb|EFS48347.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL083PA1]
 gi|313817055|gb|EFS54769.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL059PA1]
 gi|313819106|gb|EFS56820.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL046PA2]
 gi|313821181|gb|EFS58895.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL036PA1]
 gi|313823858|gb|EFS61572.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL036PA2]
 gi|313829225|gb|EFS66939.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL063PA2]
 gi|313831470|gb|EFS69184.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL007PA1]
 gi|313834120|gb|EFS71834.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL056PA1]
 gi|313839149|gb|EFS76863.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL086PA1]
 gi|314916774|gb|EFS80605.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL005PA4]
 gi|314919085|gb|EFS82916.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL050PA1]
 gi|314921113|gb|EFS84944.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL050PA3]
 gi|314926198|gb|EFS90029.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL036PA3]
 gi|314931378|gb|EFS95209.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL067PA1]
 gi|314956234|gb|EFT00606.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL027PA1]
 gi|314958729|gb|EFT02831.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL002PA1]
 gi|314961035|gb|EFT05136.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL002PA2]
 gi|314963855|gb|EFT07955.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL082PA1]
 gi|314968860|gb|EFT12958.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL037PA1]
 gi|314974836|gb|EFT18931.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL053PA1]
 gi|314977837|gb|EFT21931.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL045PA1]
 gi|314979008|gb|EFT23102.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL072PA2]
 gi|314984517|gb|EFT28609.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL005PA1]
 gi|314985912|gb|EFT30004.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL005PA2]
 gi|314989321|gb|EFT33412.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL005PA3]
 gi|315078338|gb|EFT50377.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL053PA2]
 gi|315081352|gb|EFT53328.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL078PA1]
 gi|315085008|gb|EFT56984.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL027PA2]
 gi|315087538|gb|EFT59514.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL002PA3]
 gi|315089555|gb|EFT61531.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL072PA1]
 gi|315095685|gb|EFT67661.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL038PA1]
 gi|315099989|gb|EFT71965.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL059PA2]
 gi|315102851|gb|EFT74827.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL046PA1]
 gi|315106621|gb|EFT78597.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL030PA1]
 gi|315110552|gb|EFT82528.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL030PA2]
 gi|327325845|gb|EGE67636.1| tRNA-specific adenosine deaminase [Propionibacterium acnes
           HL096PA3]
 gi|327332941|gb|EGE74673.1| tRNA-specific adenosine deaminase [Propionibacterium acnes
           HL096PA2]
 gi|327448646|gb|EGE95300.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL043PA1]
 gi|327450305|gb|EGE96959.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL013PA2]
 gi|327451128|gb|EGE97782.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL043PA2]
 gi|327455462|gb|EGF02117.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL087PA3]
 gi|327455948|gb|EGF02603.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL092PA1]
 gi|327457603|gb|EGF04258.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL083PA2]
 gi|328756878|gb|EGF70494.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL087PA1]
 gi|328757762|gb|EGF71378.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL020PA1]
 gi|328759467|gb|EGF73083.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL025PA2]
 gi|328761913|gb|EGF75422.1| tRNA-specific adenosine deaminase [Propionibacterium acnes
           HL099PA1]
 gi|332676565|gb|AEE73381.1| tRNA-specific adenosine deaminase [Propionibacterium acnes 266]
          Length = 149

 Score = 67.2 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 50/147 (34%), Gaps = 23/147 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA-- 63
           M+ AL  +R     T  +  +  +I+  +G V+               HAEV A+  A  
Sbjct: 1   MTQALDVARRAA--TWGDVPIGAVILGANGEVLSEAGNERERTGDPTAHAEVLAIRRAAE 58

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G      T  VTLEPC+    +      I+   I RVV    DP           + 
Sbjct: 59  ARDGWRLGDCTLVVTLEPCTMCAGT------IVAARIPRVVFGAFDPKAGAVSSLFDAMR 112

Query: 121 QKGI-----IVDRMMESEGKIFLHAYL 142
              +     +V  +M  E    L  + 
Sbjct: 113 DPRLPHRPKVVTGVMAEESSALLREFF 139


>gi|219110369|ref|XP_002176936.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411471|gb|EEC51399.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 172

 Score = 67.2 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 51/146 (34%), Gaps = 35/146 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
           S+D  FM+ A   ++        N  V   IV +   ++  G                  
Sbjct: 7   SWDDYFMAMAFLTAQRSK---DPNTQVGACIVDRHQRIVALGYNGFPAGASDDVLPWSRT 63

Query: 47  -----TAYGGCP-HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                        HAEV A L +  +  +  T YV L PC+       CA+ +++ G++ 
Sbjct: 64  AVQPLHRKYHYVCHAEVNAVLNKCSDNVKDTTLYVALFPCNE------CAKVLVQAGVKE 117

Query: 100 VVVCVDDPDVRVSGRGLQWLSQ-KGI 124
           VV   D      S R  + L    G+
Sbjct: 118 VVYMSDIYHDTDSCRASRILFHMAGV 143


>gi|238922541|ref|YP_002936054.1| dCMP deaminase [Eubacterium rectale ATCC 33656]
 gi|238874213|gb|ACR73920.1| dCMP deaminase [Eubacterium rectale ATCC 33656]
          Length = 161

 Score = 67.2 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 59/157 (37%), Gaps = 32/157 (20%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-------------TAYG 50
           S+D  FM  A+      +     N  V   IV  +  ++  G               A  
Sbjct: 12  SWDEYFMGIAM---LSGMRSKDPNTQVGACIVDPEHKILSMGYNGFPLGCSDDEFTWARE 68

Query: 51  GC-------PHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           G         H+E+ A+    G    GAT YVTL PC+       CA+ II+ GIR VV 
Sbjct: 69  GEDNKYFYSTHSELNAILNYRGGSLEGATIYVTLFPCNE------CAKAIIQSGIREVVY 122

Query: 103 CVDDPD-VRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138
             D  +         + L   G+ + R   ++ ++ L
Sbjct: 123 DCDKYEGTASVTASKRMLRAAGVTIRRYEHTDREVTL 159


>gi|256827679|ref|YP_003151638.1| tRNA-adenosine deaminase [Cryptobacterium curtum DSM 15641]
 gi|256583822|gb|ACU94956.1| tRNA-adenosine deaminase [Cryptobacterium curtum DSM 15641]
          Length = 206

 Score = 67.2 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 51/162 (31%), Gaps = 34/162 (20%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKD------------GIVIGRGVTAY----G 50
           D+ +M  AL  +R   GL      +  ++V +              VI R          
Sbjct: 14  DSEYMQMALNEARHAQGL--GEIPIGAVVVYEPIDPATRRPLACPQVIARAGNRRETDAD 71

Query: 51  GCPHAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
              HAE  AL EA          G T YVTLEPC        CA  + +  I   V    
Sbjct: 72  PAGHAEFLALREAARRLGVWRLTGCTVYVTLEPCIM------CAGLMHQARIDCCVFGAF 125

Query: 106 DPDVRV-----SGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
           DP              + L+    +   +   E    L ++ 
Sbjct: 126 DPKAGALGSLYRIHEDERLNHSFAVRSGVCADESAQLLRSFF 167


>gi|94986787|ref|YP_594720.1| cytosine/adenosine deaminases [Lawsonia intracellularis PHE/MN1-00]
 gi|94731036|emb|CAJ54399.1| Cytosine/adenosine deaminases [Lawsonia intracellularis PHE/MN1-00]
          Length = 162

 Score = 67.2 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 44/118 (37%), Gaps = 20/118 (16%)

Query: 11  MSAALRFSRWHVGLTSTN-PSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
           M  AL  +      T  N   V  +IV K+G +IG+G  A         HAE+ AL  AG
Sbjct: 19  MDEALIEANQ---CTKKNEVPVGAIIVHKNGKIIGKGHNAPITTSDPTAHAEILALRTAG 75

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
                   +     VTLEPC        C   II+  I  +V    + +       + 
Sbjct: 76  AVQQNYRLQDCFLIVTLEPCLM------CVGAIIQARIDGIVYGAAELNTGSITSCIA 127


>gi|303231464|ref|ZP_07318195.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Veillonella atypica ACS-049-V-Sch6]
 gi|302513901|gb|EFL55912.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Veillonella atypica ACS-049-V-Sch6]
          Length = 159

 Score = 67.2 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 52/144 (36%), Gaps = 33/144 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT---------------- 47
           S+D  FM  A+  ++        N  V   IV  D  ++  G                  
Sbjct: 9   SWDEYFMGVAILAAQRSK---DPNTQVGACIVSNDNKILSIGYNGMPLNCSDDDFTWERD 65

Query: 48  -----AYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                 Y    H+E+ A+    G    G+  YVTL PC+       CA+ II+ GI+ V+
Sbjct: 66  TADDNKYFYTVHSELNAILNYRGGSLEGSKIYVTLFPCNE------CAKAIIQSGIKAVI 119

Query: 102 VCVD-DPDVRVSGRGLQWLSQKGI 124
              D   D +      + L   G+
Sbjct: 120 YRDDLYKDTKEVKASKRMLKTAGV 143


>gi|282850251|ref|ZP_06259630.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Veillonella parvula ATCC 17745]
 gi|282579744|gb|EFB85148.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Veillonella parvula ATCC 17745]
          Length = 159

 Score = 67.2 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 52/144 (36%), Gaps = 33/144 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT---------------- 47
           S+D  FM  A+  ++        N  V   IV  D  ++  G                  
Sbjct: 9   SWDEYFMGVAILAAQRSK---DPNTQVGACIVSNDNKILSIGYNGMPLNCSDDDFTWERD 65

Query: 48  -----AYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                 Y    H+E+ A+    G    G+  YVTL PC+       CA+ II+ GI+ V+
Sbjct: 66  TADDNKYFYTVHSELNAILNYRGGSLEGSKIYVTLFPCNE------CAKAIIQSGIKAVI 119

Query: 102 VCVD-DPDVRVSGRGLQWLSQKGI 124
              D   D +      + L   G+
Sbjct: 120 YRDDLYKDTKEVKASKRMLKTAGV 143


>gi|301753666|ref|XP_002912694.1| PREDICTED: tRNA-specific adenosine deaminase 2-like [Ailuropoda
           melanoleuca]
          Length = 192

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 27/128 (21%)

Query: 8   ARFMSAALRFSRWHVGLTSTN--PSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
            ++M  A++ ++  +     N    V CL+V +  V+G+G            HAE+ A++
Sbjct: 24  KKWMEEAMQMAKEAL----ENIEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAID 79

Query: 62  EA-----------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           +A            E       YVT+EPC        CA  +    I  VV    +    
Sbjct: 80  QALDWCHRSGKSPSEVFEHTVLYVTVEPCIM------CAAALRLMKIPLVVYGCQNERFG 133

Query: 111 VSGRGLQW 118
             G  L  
Sbjct: 134 GCGSVLNI 141


>gi|254429334|ref|ZP_05043041.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Alcanivorax sp. DG881]
 gi|196195503|gb|EDX90462.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Alcanivorax sp. DG881]
          Length = 150

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 15/98 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
            V  L+V+D  ++G+G            HAE+ A+  A +  R     G+T YVTLEPC 
Sbjct: 24  PVGALVVRDNRLLGKGYNQPIIASDPSAHAEIVAMRSAAQAERNYRLSGSTLYVTLEPC- 82

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                  C   ++   I R+V    +P   V    LQ 
Sbjct: 83  -----TMCFGAMVHARIGRLVYGASEPRAGVCESQLQL 115


>gi|284040230|ref|YP_003390160.1| CMP/dCMP deaminase zinc-binding protein [Spirosoma linguale DSM 74]
 gi|283819523|gb|ADB41361.1| CMP/dCMP deaminase zinc-binding protein [Spirosoma linguale DSM 74]
          Length = 144

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 53/153 (34%), Gaps = 21/153 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
           MP    D  FM  AL  +       +    V  ++V    +I +             HAE
Sbjct: 1   MP----DDYFMEIALTLAEEAA--DNGEIPVGAIVVCRNRIIAKARNQTEQLKDVTAHAE 54

Query: 57  VQALEEAG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+  A      +     T YVTLEPC        CA  +    + R+V+   D     
Sbjct: 55  IMAITSATQYLGSKYLPDCTMYVTLEPC------VMCAGALFWAQLGRLVIGAADARRGY 108

Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
           S      L  K  +   ++  E +  L  + TR
Sbjct: 109 SRVETNLLHPKTRVETGVLAEESQALLAKFFTR 141


>gi|120402841|ref|YP_952670.1| deaminase-reductase domain-containing protein [Mycobacterium
           vanbaalenii PYR-1]
 gi|119955659|gb|ABM12664.1| bifunctional deaminase-reductase domain protein [Mycobacterium
           vanbaalenii PYR-1]
          Length = 329

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 53/317 (16%), Positives = 96/317 (30%), Gaps = 41/317 (12%)

Query: 77  EPCSHYGRSPPCAQFIIECGIRRVVV-CVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135
            P     R  P    +         +  VD P  +   R +  L  + ++  R       
Sbjct: 9   SPSCPGHRRAPFVITVRISREIHRHLPGVDLPSPQTPRRQMPLLVMRALLSGRGRRHRNV 68

Query: 136 IFL--HAYLTRQVEKRSHITLKIAVSQDNMIGMAGC-----GSVPITGFIS-KNQVHLLR 187
           + +      T     R  +    + S D  I ++                S    V   R
Sbjct: 69  VRMGEPGRSTVSGNGRPWVVTHNSASVDGRIAVSPGLLLMMDERWPVLPGSTYADV-KRR 127

Query: 188 AQSDAILVGIGTVLADD-------PELTCRLNGLQEHSPMRIIL----------DPHFKL 230
            +   IL G G+ + D        P    R   L+ + P + +           D   ++
Sbjct: 128 HEPTVILEGSGSFVRDTEEPSPLPPATETRQVLLENYLPEKAVAAATNGWLTVPDSRGRV 187

Query: 231 SLDSKIIKTALLAPV---IIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGR 285
               K       A     ++V+    P      R++ I  +       DLK+ L ++  +
Sbjct: 188 RWLYKQFPGEDWAGWHVLVLVSTATPPEYLSYLRREEIPYLVAGESRVDLKQALRLIRDQ 247

Query: 286 -GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS-------PLEEGYLEKN 337
               ++L  GG  +  + + + LVD I +    I IG    P+       P++    +  
Sbjct: 248 FRAETVLSTGGGQLNGALLRAGLVDEIEVEVVPIAIGGEATPTLFTAPDLPVDGVPTQLE 307

Query: 338 FMCVRRDYFGSDVCLEY 354
                    G  V L Y
Sbjct: 308 LTSAEIRSQGR-VLLRY 323


>gi|21227525|ref|NP_633447.1| dCMP deaminase [Methanosarcina mazei Go1]
 gi|20905903|gb|AAM31119.1| dCMP deaminase [Methanosarcina mazei Go1]
          Length = 153

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 54/155 (34%), Gaps = 43/155 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S D  F+  A    +    L +   +V  +IV+D  ++  G                   
Sbjct: 6   SLDEYFLEIAYVVGKRATCLRN---NVGAVIVRDKRILSTGYNGAPSGMEHCLDVGCIRE 62

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G    GAT Y T +PC        CA+ II 
Sbjct: 63  LEKIPSGTRHEKCRAVHAEQNAIIQAALHGVSIAGATIYCTHQPCI------LCAKMIIN 116

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
             I+RVV  +  PD       L +    G+ V+ +
Sbjct: 117 SNIKRVVYSIPYPDT----DSLIFFRSAGVEVEHI 147


>gi|51246206|ref|YP_066090.1| cytosine deaminase [Desulfotalea psychrophila LSv54]
 gi|50877243|emb|CAG37083.1| probable cytosine deaminase [Desulfotalea psychrophila LSv54]
          Length = 145

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 20/149 (13%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQALEEAG 64
           +F + A+  +R  +  T   P +  ++V DG ++GRG       G    HAE+  LE AG
Sbjct: 3   KFFAVAVAEARKGMA-TGGIP-IGSVLVIDGQIVGRGHNQRVQRGSVVLHAEMDCLENAG 60

Query: 65  ----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                + R AT Y TL PC        C+  ++  GI RVV+  +    R       ++ 
Sbjct: 61  RIKAADYRRATLYSTLSPCDM------CSGAVLLYGIPRVVIGEN----RTFCGPEDYMR 110

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            +G+ V  +   E +  +  ++    E  
Sbjct: 111 SQGVEVVVVDSEECRQLMERFIEENPELW 139


>gi|325860320|ref|ZP_08173442.1| putative dCMP deaminase [Prevotella denticola CRIS 18C-A]
 gi|325482199|gb|EGC85210.1| putative dCMP deaminase [Prevotella denticola CRIS 18C-A]
          Length = 170

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 57/152 (37%), Gaps = 38/152 (25%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53
           ++ D R++  A  ++            V  L+VK+ ++I  G     G P          
Sbjct: 22  AAVDYRYLRMAHIWAENSYCKRR---QVGALVVKNKMIISDGY---NGTPSGFENVCEDE 75

Query: 54  ---------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                    HAE  A   L  +G  + G+T YVT  PC        CA+ II+ GI RVV
Sbjct: 76  AGVTKSYVLHAEANAITKLARSGNNSEGSTLYVTASPCIE------CAKLIIQAGISRVV 129

Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
                        G+  L + GI V+     E
Sbjct: 130 YAEKYRLT----DGIDLLKRAGIEVEYRSLDE 157


>gi|51245328|ref|YP_065212.1| cytidine and deoxycytidylate deaminase family protein [Desulfotalea
           psychrophila LSv54]
 gi|50876365|emb|CAG36205.1| related to cytidine and deoxycytidylate deaminase family protein
           [Desulfotalea psychrophila LSv54]
          Length = 169

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 56/166 (33%), Gaps = 19/166 (11%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
             D  FM  AL  +     L +    V C+IV  G V+  G            HAE+ AL
Sbjct: 2   DVDESFMEVALAQAERA--LVAGEFPVGCVIVSQGEVVAVGERRNSVSANELDHAEMNAL 59

Query: 61  EEAGEEARGAT-----AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
                + + A       Y T+EPC        C   +I  G+R +V   +D     +   
Sbjct: 60  RTLLAQGQPADMEKLVVYSTMEPCLM------CYSALIVNGVRNIVYAYEDAMGGGTSLP 113

Query: 116 LQWLS--QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
           L  L+    GI ++          L  +       + ++   +   
Sbjct: 114 LSQLAPLYAGIRMNIRPHVLRARSLRLFQQFFSRPQPYLQDSLLCR 159


>gi|168010085|ref|XP_001757735.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691011|gb|EDQ77375.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 413

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 51/153 (33%), Gaps = 20/153 (13%)

Query: 30  SVACLIVKDGIVIGRGVT---AYGGCP--HAEVQALEEA-----GEEARGATAYVTLEPC 79
            V  ++V    +I R         G P  HAE+  +  A     G      T YVTLEPC
Sbjct: 232 PVGAVLVHKNKIIAR-FHNEVETTGDPTAHAEMLCIRCAAAQLGGWRLTDVTLYVTLEPC 290

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
                 P CA  I++  +  VV    +  +   G  ++      +      E + K +LH
Sbjct: 291 ------PMCAGAILQGRVSEVVWGARNSLLGADGSWIKLFP---VSSSGEQEPKCKDYLH 341

Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172
            +      +R  +  +          M      
Sbjct: 342 PFHRTITVRRGVLGEECGDIMQTFFAMRRQQPK 374


>gi|242373893|ref|ZP_04819467.1| competence protein ComEB [Staphylococcus epidermidis M23864:W1]
 gi|242348447|gb|EES40049.1| competence protein ComEB [Staphylococcus epidermidis M23864:W1]
          Length = 153

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 54/151 (35%), Gaps = 34/151 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M    ++  FM+ +   +           SV   IVKD  +I  G               
Sbjct: 1   MERIKWEEYFMAQSHLLALRSTCQRL---SVGATIVKDNRIIAGGYNGSVAGEVHCIDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G    GAT YVT  PC +      C + II+ GI+
Sbjct: 58  CLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLN------CTKSIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            +    D  +   +   ++ L Q GI   R+
Sbjct: 112 TIYYAEDYHNHDYA---IKLLQQSGIEYKRI 139


>gi|120437804|ref|YP_863490.1| cytidine/deoxycytidylate deaminase family protein [Gramella
           forsetii KT0803]
 gi|117579954|emb|CAL68423.1| cytidine/deoxycytidylate deaminase family protein [Gramella
           forsetii KT0803]
          Length = 143

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 36/148 (24%)

Query: 9   RFMSAALRFSRWHVGLTSTN-PSVACLIVKDGIVIGRGVTAYGGCP-------------- 53
           +F  A LR +R    L+  N   V  LIVKD ++I  G     G P              
Sbjct: 8   KFDKAYLRIAREWSKLSHCNRKQVGALIVKDRMIISDGY---NGTPTGFENFCEDEEGYT 64

Query: 54  -----HAEVQA-LEEAG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE  A L+ AG  +  + AT Y+T+ PC        C++ I + GI R+V  +D
Sbjct: 65  KWYVLHAEANAILKVAGSTQSCKDATLYITMSPCKE------CSKLIHQSGISRLVFQID 118

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESE 133
             D      GL++L + G+ ++++ E E
Sbjct: 119 YKD----NSGLEFLKKAGVELEQITELE 142


>gi|240143386|ref|ZP_04741987.1| putative deoxycytidylate deaminase [Roseburia intestinalis L1-82]
 gi|257204654|gb|EEV02939.1| putative deoxycytidylate deaminase [Roseburia intestinalis L1-82]
 gi|291537131|emb|CBL10243.1| Deoxycytidylate deaminase [Roseburia intestinalis M50/1]
 gi|291540369|emb|CBL13480.1| Deoxycytidylate deaminase [Roseburia intestinalis XB6B4]
          Length = 161

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 61/160 (38%), Gaps = 34/160 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-------------TAYG 50
           S+D  FM  A+      +     N  V   IV  D  ++  G                  
Sbjct: 10  SWDEYFMGVAV---LSGMRSKDPNTQVGACIVSEDHKILSMGYNGFPTGCSDDEFPWERE 66

Query: 51  GCP---------HAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           G P         H+E+ A+    G    GAT YVTL PC+       CA+ II+ GIRR+
Sbjct: 67  GEPLENKYFYTTHSELNAILNYRGGSLEGATIYVTLFPCNE------CAKAIIQSGIRRI 120

Query: 101 VVCVDDPD-VRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
           V   D  +         + L+  G+++ R   +  +I L 
Sbjct: 121 VYDSDKYETTPAVVASKKMLNAAGVVLQRYEHTNRRIELE 160


>gi|237715563|ref|ZP_04546044.1| deoxycytidylate deaminase [Bacteroides sp. D1]
 gi|262408572|ref|ZP_06085118.1| ComE operon protein 2 [Bacteroides sp. 2_1_22]
 gi|294647040|ref|ZP_06724653.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides ovatus SD CC 2a]
 gi|294809884|ref|ZP_06768560.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229444272|gb|EEO50063.1| deoxycytidylate deaminase [Bacteroides sp. D1]
 gi|262353437|gb|EEZ02531.1| ComE operon protein 2 [Bacteroides sp. 2_1_22]
 gi|292637617|gb|EFF56022.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides ovatus SD CC 2a]
 gi|294442913|gb|EFG11704.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides xylanisolvens SD CC 1b]
 gi|295086823|emb|CBK68346.1| Deoxycytidylate deaminase [Bacteroides xylanisolvens XB1A]
          Length = 149

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 53/143 (37%), Gaps = 38/143 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
             D R++  A  ++            V  LIVKD ++I  G     G P           
Sbjct: 9   ELDKRYIRMASIWAENSYCQRRK---VGALIVKDKMIISDGY---NGTPSGFENVCEDEN 62

Query: 54  --------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  A   +  +   + GAT YVT  PC        CA+ II+ GI+RVV 
Sbjct: 63  NLTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CAKLIIQAGIKRVVY 116

Query: 103 CVDDPDVRVSGRGLQWLSQKGII 125
                       G++ L + GI 
Sbjct: 117 SEHYRL----EDGIELLKRAGIE 135


>gi|150005156|ref|YP_001299900.1| deoxycytidylate deaminase [Bacteroides vulgatus ATCC 8482]
 gi|212694623|ref|ZP_03302751.1| hypothetical protein BACDOR_04153 [Bacteroides dorei DSM 17855]
 gi|237711112|ref|ZP_04541593.1| deoxycytidylate deaminase [Bacteroides sp. 9_1_42FAA]
 gi|237727465|ref|ZP_04557946.1| deoxycytidylate deaminase [Bacteroides sp. D4]
 gi|254883290|ref|ZP_05256000.1| deoxycytidylate deaminase [Bacteroides sp. 4_3_47FAA]
 gi|265750698|ref|ZP_06086761.1| deoxycytidylate deaminase [Bacteroides sp. 3_1_33FAA]
 gi|294777766|ref|ZP_06743212.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides vulgatus PC510]
 gi|319642664|ref|ZP_07997310.1| deoxycytidylate deaminase [Bacteroides sp. 3_1_40A]
 gi|149933580|gb|ABR40278.1| deoxycytidylate deaminase [Bacteroides vulgatus ATCC 8482]
 gi|212663124|gb|EEB23698.1| hypothetical protein BACDOR_04153 [Bacteroides dorei DSM 17855]
 gi|229434321|gb|EEO44398.1| deoxycytidylate deaminase [Bacteroides dorei 5_1_36/D4]
 gi|229454956|gb|EEO60677.1| deoxycytidylate deaminase [Bacteroides sp. 9_1_42FAA]
 gi|254836083|gb|EET16392.1| deoxycytidylate deaminase [Bacteroides sp. 4_3_47FAA]
 gi|263237594|gb|EEZ23044.1| deoxycytidylate deaminase [Bacteroides sp. 3_1_33FAA]
 gi|294448354|gb|EFG16908.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides vulgatus PC510]
 gi|317385752|gb|EFV66685.1| deoxycytidylate deaminase [Bacteroides sp. 3_1_40A]
          Length = 144

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 53/147 (36%), Gaps = 32/147 (21%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC------------- 52
            D R++  A   S W          V  LIVKD ++I  G                    
Sbjct: 11  LDKRYIRMA---SIWAENSYCERRQVGALIVKDKMIISDGYNGTPAGFENVCEDDNGVTK 67

Query: 53  ---PHAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               HAE  A   +  +   + GAT YVT  PC        CA+ II+ GI+RVV     
Sbjct: 68  PYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CAKLIIQAGIKRVVYSEKY 121

Query: 107 PDVRVSGRGLQWLSQKGIIVDRMMESE 133
                   GL  L +  I V  +  +E
Sbjct: 122 RL----EDGLDLLKRANIEVIYINPNE 144


>gi|134045717|ref|YP_001097203.1| cytosine deaminase [Methanococcus maripaludis C5]
 gi|132663342|gb|ABO34988.1| Cytosine deaminase [Methanococcus maripaludis C5]
          Length = 145

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 59/148 (39%), Gaps = 20/148 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGE 65
           F+  AL+ ++  +GL      +  ++V    +IGRG            HAE+ ALE AG 
Sbjct: 4   FIDEALKEAK--LGLEEGGIPIGAVLVYKNEIIGRGHNRRVQNNSAILHAEMDALENAGR 61

Query: 66  EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                 +    Y TL PC        C+  ++   I++V++  ++  +         L +
Sbjct: 62  LTSDVYKNCELYTTLSPCIM------CSGAVLLYKIKKVIIGENETFLGAE----NLLIK 111

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            G+ V+ + +      +  ++    +  
Sbjct: 112 NGVDVEVLNDERCVKMMEDFIKNNPKLW 139


>gi|148555831|ref|YP_001263413.1| CMP/dCMP deaminase, zinc-binding [Sphingomonas wittichii RW1]
 gi|148501021|gb|ABQ69275.1| CMP/dCMP deaminase, zinc-binding [Sphingomonas wittichii RW1]
          Length = 163

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 61/171 (35%), Gaps = 18/171 (10%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           M   + + RF+ AA+  +R +V           ++VKDG ++  GV           HAE
Sbjct: 1   MTGPADEQRFLRAAIELARDNVAQGGR--PFGAVVVKDGAIVAVGVNEILATNDPTAHAE 58

Query: 57  VQALEEAG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+  AG      +  G T Y +  PC      P C   +   GI  V     + D   
Sbjct: 59  LGAIRAAGRRLGSPDLSGCTVYASGHPC------PMCMAAMRMAGIGAVAYAYSNEDGEP 112

Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
            G       Q  I+ D    ++ +     +      +R  I  +    +D 
Sbjct: 113 FGLS-TAAVQAAILADLARPADEQAMAARHQPVDGAERPDIYAEWRRRRDR 162


>gi|118496774|ref|YP_897824.1| zinc-binding protein [Francisella tularensis subsp. novicida U112]
 gi|118422680|gb|ABK89070.1| zinc-binding protein [Francisella novicida U112]
          Length = 153

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 53/155 (34%), Gaps = 23/155 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
             S  D  FM  A + +          P +  ++V+DG +I +      G      HAE+
Sbjct: 3   NYSDQDIFFMQKAYQQALLA-YQAGEVP-IGAVLVRDGQIIAQNFNQTIGLNDPTAHAEI 60

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
             L  A  +           YVTLEPC        C   +I+  +  +V   DD  V   
Sbjct: 61  LVLRSAALKLDNYRLVNTKLYVTLEPCIM------CLGGLIQARVPELVYACDDSRVGAF 114

Query: 113 GRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
            R  +    K I     +   +M  E    L  + 
Sbjct: 115 SRE-KLHHNKNINHNLGVTAGVMADECGKLLKDFF 148


>gi|317055943|ref|YP_004104410.1| CMP/dCMP deaminase zinc-binding protein [Ruminococcus albus 7]
 gi|315448212|gb|ADU21776.1| CMP/dCMP deaminase zinc-binding protein [Ruminococcus albus 7]
          Length = 158

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 56/153 (36%), Gaps = 23/153 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAY-GGC---PHAEVQ 58
           + D  +M          +        V  ++VK   G ++GRG      G     HAE+ 
Sbjct: 2   TRDEMYMRK--ALELAALAADEDEVPVGAVVVKKSTGEIVGRGFNRREYGRSPLTHAEIV 59

Query: 59  ALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A++EA  +  G        +VTLEPC      P CA  +I   + RVV    D      G
Sbjct: 60  AIDEASRKLGGWRLIDCELFVTLEPC------PMCAGAVINSRVERVVFGAYDKKAGSCG 113

Query: 114 RGLQWL----SQKGIIVDRMMESEGKIFLHAYL 142
             +       + K   +  ++E E    L  + 
Sbjct: 114 SVVDLFGLPYNHKPECIGGVLEEECAAVLTEFF 146


>gi|319948958|ref|ZP_08023063.1| hypothetical protein ES5_06172 [Dietzia cinnamea P4]
 gi|319437396|gb|EFV92411.1| hypothetical protein ES5_06172 [Dietzia cinnamea P4]
          Length = 88

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 2  PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQAL 60
          P    +   ++ A+  SR  +G+++ NP V  +++   G V+GRG T   G  HAEV AL
Sbjct: 16 PARRLERAALAEAIALSRAALGVSTPNPPVGAVVLDAAGGVVGRGATEAPGGRHAEVVAL 75

Query: 61 EEAGEE 66
          +EAG+ 
Sbjct: 76 DEAGDR 81


>gi|154482616|ref|ZP_02025064.1| hypothetical protein EUBVEN_00283 [Eubacterium ventriosum ATCC
           27560]
 gi|149736516|gb|EDM52402.1| hypothetical protein EUBVEN_00283 [Eubacterium ventriosum ATCC
           27560]
          Length = 163

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 53/148 (35%), Gaps = 35/148 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT---------------- 47
           S+D  FM  A   +   +     N  V   IV  D  ++  G                  
Sbjct: 11  SWDEYFMGVA-SLA--ALRSKDPNTQVGACIVSDDNKILSMGYNGLPVGCSDDEFPWNRE 67

Query: 48  -------AYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                   Y    H+E+ A+    G    GA  YVTL PC+       CA+ II+CGI++
Sbjct: 68  SDDPYDNKYFYTTHSELNAILNYRGGSLEGAKIYVTLFPCNE------CAKAIIQCGIKK 121

Query: 100 VVVCVDDP-DVRVSGRGLQWLSQKGIIV 126
           V+   D   D        + ++  G+  
Sbjct: 122 VIYGDDKYGDTSSVKASKRMMAAAGVEY 149


>gi|332291606|ref|YP_004430215.1| CMP/dCMP deaminase zinc-binding protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169692|gb|AEE18947.1| CMP/dCMP deaminase zinc-binding protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 142

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 36/151 (23%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTN-PSVACLIVKDGIVIGRGVTAYGGCP-------- 53
           ++S   ++  A LR +R    L+  N   V  +IVKD ++I  G     G P        
Sbjct: 1   MASKQHKYDIAYLRMAREWGKLSYCNRKQVGAIIVKDKMIISDGY---NGTPTGFENVCE 57

Query: 54  -----------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                      HAE  A+     + +   GAT Y+TL PC        C++ + + GI+R
Sbjct: 58  DDENNTKWYVLHAEANAILKVASSTQSCHGATLYITLSPC------KDCSKLVHQAGIKR 111

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           VV      +      G+++L + G+ +  + 
Sbjct: 112 VVY----HNAYKDLTGVKFLEKAGVEIVHLQ 138


>gi|327313504|ref|YP_004328941.1| putative dCMP deaminase [Prevotella denticola F0289]
 gi|326946111|gb|AEA21996.1| putative dCMP deaminase [Prevotella denticola F0289]
          Length = 170

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 57/152 (37%), Gaps = 38/152 (25%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53
           ++ D R++  A  ++            V  L+VK+ ++I  G     G P          
Sbjct: 22  AAVDYRYLRMAHIWAENSYCKRR---QVGALVVKNKMIISDGY---NGTPSGFENVCEDE 75

Query: 54  ---------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                    HAE  A   L  +G  + G+T YVT  PC        CA+ II+ GI RVV
Sbjct: 76  AGVTKSYVLHAEANAITKLARSGNNSEGSTLYVTASPCIE------CAKLIIQAGICRVV 129

Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
                        G+  L + GI V+     E
Sbjct: 130 YAEKYRLT----DGIDLLKRAGIEVEYRSLDE 157


>gi|182416390|ref|YP_001821456.1| CMP/dCMP deaminase zinc-binding [Opitutus terrae PB90-1]
 gi|177843604|gb|ACB77856.1| CMP/dCMP deaminase zinc-binding [Opitutus terrae PB90-1]
          Length = 178

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 56/152 (36%), Gaps = 23/152 (15%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
            D  +MS A   +     L      +  +I   G V+         A     HAE+ A+ 
Sbjct: 20  DDTFYMSLAFNQAIDAWRLDEV--PIGAVIELGGEVVAAAHNTVEEARDPTAHAEMLAIT 77

Query: 62  EAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV--SGR 114
           +A  +       GAT YVT EPC      P C+  ++   ++RV   V DP +       
Sbjct: 78  QAAAKLGDWRLEGATVYVTKEPC------PMCSGAMLMSRVKRVCYAVRDPKMGCLGGAT 131

Query: 115 GLQWL----SQKGIIVDRMMESEGKIFLHAYL 142
            L  L        +    ++E E +  L A+ 
Sbjct: 132 NLNDLPRVNHHVELTAGGVLEDECRALLQAFF 163


>gi|228953373|ref|ZP_04115419.1| Cytosine deaminase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|229080221|ref|ZP_04212748.1| Cytosine deaminase [Bacillus cereus Rock4-2]
 gi|229191139|ref|ZP_04318128.1| Cytosine deaminase [Bacillus cereus ATCC 10876]
 gi|228592289|gb|EEK50119.1| Cytosine deaminase [Bacillus cereus ATCC 10876]
 gi|228703116|gb|EEL55575.1| Cytosine deaminase [Bacillus cereus Rock4-2]
 gi|228806270|gb|EEM52843.1| Cytosine deaminase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 158

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 43/107 (40%), Gaps = 22/107 (20%)

Query: 13  AALRFSRWHVG-LTSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHAEVQALEEAGEE 66
            AL  +   +   T     V  +IV  +  VI RG            HAE+ A+  AGE 
Sbjct: 1   MALEEAEKALKENTYP---VGAVIVDGNNNVIARGRNRVHPQKDITAHAEIDAIRNAGEA 57

Query: 67  ARGA-------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
              A       T Y TLEPC      P C   I+   I+RVV  ++D
Sbjct: 58  MFDAKIKNEKFTIYSTLEPC------PMCTGGILFAKIQRVVWLLND 98


>gi|320451012|ref|YP_004203108.1| tRNA(Ile)-lysidine synthase [Thermus scotoductus SA-01]
 gi|320151181|gb|ADW22559.1| tRNA(Ile)-lysidine synthase [Thermus scotoductus SA-01]
          Length = 514

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 56/150 (37%), Gaps = 18/150 (12%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
           S + R+M+ AL  +R           V  ++V  G  + R             HAE+  L
Sbjct: 377 SEEERYMALALEEARQA--FQEGEVPVGAVLVV-GERVYRAHNQVEATRDPTAHAEMLLL 433

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            E G  ARG   YVTLEPC        C   + E G+  VV  V++       R  Q   
Sbjct: 434 REVGRGARGGRLYVTLEPC------RMCHHALREAGV-EVVYGVENLKEGALTRFGQGEG 486

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
            +G     ++E E    L  +  R  E   
Sbjct: 487 LRG----GVLEGECAKLLKGFFARLREGCR 512


>gi|149278806|ref|ZP_01884941.1| cytidine/deoxycytidylate deaminase (dCMP deaminase) [Pedobacter sp.
           BAL39]
 gi|149230425|gb|EDM35809.1| cytidine/deoxycytidylate deaminase (dCMP deaminase) [Pedobacter sp.
           BAL39]
          Length = 150

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 53/153 (34%), Gaps = 38/153 (24%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M   SF+  FM+ A   +     + +    V  ++ KD  +I  G               
Sbjct: 1   MSKPSFEHIFMNLASELAERSHCVRA---HVGAVLTKDTRIISIGYNGPPAETHNCDEEW 57

Query: 54  -----------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFII 93
                            HAE  A+  A   G +  G+T Y TL PC        CA+ I+
Sbjct: 58  PETGCARDSRGSCSLALHAEENAILYASKNGSKIEGSTLYTTLSPCI------ACARLIL 111

Query: 94  ECGIRRVVV--CVDDPDVRVSGRGLQWLSQKGI 124
             GI+ V       +     S  G+ +L + G+
Sbjct: 112 SSGIKLVYFKDSYAEYKGLASDEGVDFLRRFGV 144


>gi|296090277|emb|CBI40096.3| unnamed protein product [Vitis vinifera]
          Length = 205

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 26/117 (22%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE---- 61
           FM  A++ ++    L S    V C+IV+DG +I  G            HAE++A++    
Sbjct: 30  FMELAIQQAKLA--LDSLEVPVGCVIVEDGKLIATGRNRTTETRNATRHAEMEAIDVLLE 87

Query: 62  ----------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                     E  E     + YVT EPC        CA  +   GI+ V     +  
Sbjct: 88  QWQKNGLSKLEVAEIFSKCSLYVTCEPCIM------CAASLSILGIKEVYYGCANDK 138


>gi|51891218|ref|YP_073909.1| dCMP deaminase [Symbiobacterium thermophilum IAM 14863]
 gi|51854907|dbj|BAD39065.1| dCMP deaminase [Symbiobacterium thermophilum IAM 14863]
          Length = 144

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 59/150 (39%), Gaps = 35/150 (23%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP------ 53
           M   S+D  FM  A   ++           V  ++V+D  ++  G      G P      
Sbjct: 1   MARPSWDEYFMELAQVVAKRSTCNRRK---VGTVLVRDKRILTTGYNGSPSGLPHCTDVG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE  A+ +A   G   +GAT YVT  PC H      CA+ +I  GI 
Sbjct: 58  CLVVDGHCVRAIHAEQNAIIQAALHGITLKGATCYVTSSPCVH------CAKMLIAAGIE 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           R+V      D      GL+   Q G++++R
Sbjct: 112 RIVYM----DEYTEQIGLEMARQAGVVMER 137


>gi|291397092|ref|XP_002714901.1| PREDICTED: deaminase domain containing 1-like [Oryctolagus
           cuniculus]
          Length = 192

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 27/128 (21%)

Query: 8   ARFMSAALRFSRWHVGLTSTN--PSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
            ++M  A+R ++  +     N    V CL+V +  V+G+G            HAE+ A++
Sbjct: 24  EKWMEEAMRMAKEAL----ENIEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAID 79

Query: 62  EAGEEAR-----------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           +  +  R               YVT+EPC        CA  +    I  VV    +    
Sbjct: 80  QVLDWCRRSGKSSAEVFEHTVLYVTVEPCIM------CAAALRLLKIPLVVYGCQNERFG 133

Query: 111 VSGRGLQW 118
             G  L  
Sbjct: 134 GCGSVLNI 141


>gi|282854964|ref|ZP_06264298.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes J139]
 gi|282582110|gb|EFB87493.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes J139]
 gi|314922049|gb|EFS85880.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL001PA1]
 gi|314965899|gb|EFT09998.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL082PA2]
 gi|314980659|gb|EFT24753.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL110PA3]
 gi|315090999|gb|EFT62975.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL110PA4]
 gi|315095126|gb|EFT67102.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL060PA1]
 gi|315105358|gb|EFT77334.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL050PA2]
 gi|327328755|gb|EGE70515.1| tRNA-specific adenosine deaminase [Propionibacterium acnes
           HL103PA1]
          Length = 156

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 50/150 (33%), Gaps = 23/150 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEE 62
            + M+ AL  +R     T  +  +  +I+  DG V+               HAEV A+  
Sbjct: 5   RQAMTQALDVARRAA--TWGDVPIGAVILGADGEVLSEAGNERERTGDPTAHAEVLAIRR 62

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G      T  VTLEPC+    +      I+   I RVV    D           
Sbjct: 63  AAEARDGWRLGDCTLVVTLEPCTMCAGT------IVAARIPRVVFGAFDSKAGAVSSLFD 116

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYL 142
            +    +     +V  +M  E    L  + 
Sbjct: 117 VMRDPRLPHRPKVVTGVMAEESSALLREFF 146


>gi|57642192|ref|YP_184670.1| deoxycytidylate deaminase [Thermococcus kodakarensis KOD1]
 gi|57160516|dbj|BAD86446.1| deoxycytidylate deaminase [Thermococcus kodakarensis KOD1]
          Length = 178

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 49/146 (33%), Gaps = 32/146 (21%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
           D  FM  A   S      T     V  + VKDG ++  G                     
Sbjct: 24  DEYFMLIAKLVSLRA---TCPRLRVGAVAVKDGYILATGYNGAPRGMDHCIDVGCLIVDG 80

Query: 54  ------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                 HAE   +  A   G    GAT YVT  PC        C + +I  GIR +V   
Sbjct: 81  HCHRAVHAEQNVIAMAARKGISLEGATLYVTHFPCD------TCFKLLINAGIREIVYEE 134

Query: 105 DDPDVRVSGRGLQWLSQKGIIVDRMM 130
             P+   +   L+   +KGI+  R  
Sbjct: 135 MYPN-EATEILLREAQEKGIVKIRQF 159


>gi|213019012|ref|ZP_03334819.1| cytidine and deoxycytidylate deaminase family protein [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|212995121|gb|EEB55762.1| cytidine and deoxycytidylate deaminase family protein [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 135

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 54/140 (38%), Gaps = 14/140 (10%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEA--GEEA 67
           M+ A+  ++           +  +IV    +I      +     HAE+  + +A      
Sbjct: 1   MALAIEQAKLAQ--KDGEVPIGAVIVNGNNIISSAHNISNDPTAHAEMLTIRQAFSTSTL 58

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD---VRVSGRGLQWLSQKGI 124
             A  YVTLEPC      P CAQ I    I+R+     +P    V    R  Q+ +    
Sbjct: 59  YEAEMYVTLEPC------PMCAQAISFAKIKRLYFGAYNPKGGGVENGTRIFQFCNHIPE 112

Query: 125 IVDRMMESEGKIFLHAYLTR 144
           +   ++E++  + L  +  +
Sbjct: 113 VYGGILETKCSLLLKDFFEK 132


>gi|198283023|ref|YP_002219344.1| CMP/dCMP deaminase zinc-binding [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218665839|ref|YP_002425229.1| cytidine and deoxycytidylate deaminase family protein
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247544|gb|ACH83137.1| CMP/dCMP deaminase zinc-binding [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218518052|gb|ACK78638.1| cytidine and deoxycytidylate deaminase family protein
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 177

 Score = 66.8 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 47/127 (37%), Gaps = 18/127 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHAEVQA 59
           S DA +M+ AL ++    G       V  ++V   G ++          +    HAE++ 
Sbjct: 9   SRDAAWMALALDYAARAAGQ--GEVPVGAVLVDVGGHLLAAAHNTPVRDHDPSAHAEMRV 66

Query: 60  LEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           L +A    +     G T YVTLEPC        C   ++   + R+V    DP       
Sbjct: 67  LRQAARSLQNYRLTGTTLYVTLEPC------VMCVGALLHARVARLVYGAPDPKAGAVES 120

Query: 115 GLQWLSQ 121
               L  
Sbjct: 121 LYHLLED 127


>gi|162447679|ref|YP_001620811.1| deoxycytidylate deaminase [Acholeplasma laidlawii PG-8A]
 gi|161985786|gb|ABX81435.1| deoxycytidylate deaminase [Acholeplasma laidlawii PG-8A]
          Length = 158

 Score = 66.8 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 54/152 (35%), Gaps = 33/152 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVA-CLIVKDGIVIGRGVT---------------- 47
           S+D  FM  A + S   +     N  V  C+I  D  ++  G                  
Sbjct: 8   SWDQYFMGVA-KLS--ALRSKDPNTQVGACIINPDRRIVAIGYNGLPMGLSDDEDFWQKN 64

Query: 48  ------AYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                  Y    HAE  A+  A    + AT YVTL PC+       C + +++ G++ +V
Sbjct: 65  EDYSKSKYAYVVHAEANAILNATTSLKDATLYVTLFPCNE------CMKLLVQAGVKEIV 118

Query: 102 VCVDDPDVRVSG-RGLQWLSQKGIIVDRMMES 132
              D    + S       + + GI   ++   
Sbjct: 119 YMSDKDKGKESHIASTTMMKKAGIKARQIQLE 150


>gi|294012909|ref|YP_003546369.1| putative deaminase [Sphingobium japonicum UT26S]
 gi|292676239|dbj|BAI97757.1| putative deaminase [Sphingobium japonicum UT26S]
          Length = 156

 Score = 66.8 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 39/107 (36%), Gaps = 17/107 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE- 65
           M  AL  +R   G     P +  ++  DG  IG G            HAE+ A+  A   
Sbjct: 15  MRRALELAR-AAGEAGEVP-IGAVVTLDGRTIGEGENRNRRDNDPTAHAEMVAIRAAAAH 72

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                  G   +VTLEPC+       CA  I    I R+     DP 
Sbjct: 73  LGDFRLAGCDLWVTLEPCAM------CAGAISHARIARLYYAAADPK 113


>gi|189502659|ref|YP_001958376.1| hypothetical protein Aasi_1340 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189498100|gb|ACE06647.1| hypothetical protein Aasi_1340 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 160

 Score = 66.8 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 48/129 (37%), Gaps = 36/129 (27%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG---------- 50
           M    FD  F+  AL+ ++    +      V  ++ KD  +I  G               
Sbjct: 1   MNRPEFDDIFIQLALQLAKRSHCVKL---QVGAVLAKDTRIISIGYNGPPSGTYNCDEQW 57

Query: 51  ---GCP-----------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFII 93
              GCP           HAE  A+  A        GAT Y+TL PC       PCA+ I 
Sbjct: 58  PGIGCPRDVKGGCSLAIHAEQNAILYALSNQAAVTGATLYITLSPCL------PCARIIF 111

Query: 94  ECGIRRVVV 102
             GI+RVV 
Sbjct: 112 TVGIKRVVY 120


>gi|239637600|ref|ZP_04678572.1| ComE operon protein 2 [Staphylococcus warneri L37603]
 gi|239596818|gb|EEQ79343.1| ComE operon protein 2 [Staphylococcus warneri L37603]
          Length = 153

 Score = 66.8 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 52/148 (35%), Gaps = 34/148 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M    ++  FM+ +   +           SV   IVKD  +I  G               
Sbjct: 1   MERIKWEEYFMAQSHLLALRSTCQRL---SVGATIVKDNRIIAGGYNGSVAGEVHCIDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G    GAT YVT  PC +      C + II+ GI+
Sbjct: 58  CLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLN------CTKSIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            +    D  +   +   ++ L Q GI  
Sbjct: 112 TIYYAEDYHNHEYA---MKLLDQSGIEY 136


>gi|332284214|ref|YP_004416125.1| putative zinc-binding hydrolase [Pusillimonas sp. T7-7]
 gi|330428167|gb|AEC19501.1| putative zinc-binding hydrolase [Pusillimonas sp. T7-7]
          Length = 152

 Score = 66.8 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 45/116 (38%), Gaps = 18/116 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCP----HAEVQALEEAGE 65
           M  AL  +       +    V  +++   G +IG G     G      HAE+ AL  A  
Sbjct: 1   MRLALEQAELA--YAAGEVPVGAVVLDAQGQLIGAGSNRTIGAHDPTGHAEIVALRAAAA 58

Query: 66  EAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
             R     GA+ YVTLEPC+       C   ++   + RVV    DP     G  L
Sbjct: 59  HVRNYRLPGASLYVTLEPCAM------CMGAMLHARLARVVYGAVDPKTGACGSVL 108


>gi|53804620|ref|YP_113769.1| cytosine deaminase [Methylococcus capsulatus str. Bath]
 gi|53758381|gb|AAU92672.1| cytosine deaminase [Methylococcus capsulatus str. Bath]
          Length = 145

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 20/148 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64
           ++ AA+  +R   GL      +  ++V DG ++GRG            HAE+  LE AG 
Sbjct: 4   YLQAAIAEARK--GLEEGGIPIGSVLVIDGEIVGRGRNRRVQKGSAILHAEMDCLENAGR 61

Query: 65  ---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
               E R AT Y TL PC        C+  I+  GI RVV   +    R       +L  
Sbjct: 62  LSAAEYRRATLYSTLSPCDM------CSGAILLYGIPRVVAGEN----RTFHGPETYLRS 111

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           + + +  + + E    +  ++       
Sbjct: 112 RNVELLVLDDPECAALMKDFIAAHPALW 139


>gi|182437330|ref|YP_001825049.1| putative deaminase [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326777951|ref|ZP_08237216.1| CMP/dCMP deaminase zinc-binding [Streptomyces cf. griseus
           XylebKG-1]
 gi|178465846|dbj|BAG20366.1| putative deaminase [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326658284|gb|EGE43130.1| CMP/dCMP deaminase zinc-binding [Streptomyces cf. griseus
           XylebKG-1]
          Length = 142

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 23/147 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGC----PHAEVQALEEAGE 65
           M  AL  +      ++ +  V  +++  DG  +               HAE+ AL  A E
Sbjct: 1   MRRALAEA--GRAASAGDVPVGAVVLGPDGTGLATAHNEREATGDPTAHAEILALRRAAE 58

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ--- 117
                   G T  VTLEPC        CA  +++  I RVV    D     +G       
Sbjct: 59  AHGEWRLTGCTLVVTLEPC------TMCAGALVQSRIARVVYGARDEKAGAAGSLWDVVR 112

Query: 118 --WLSQKGIIVDRMMESEGKIFLHAYL 142
              L+ +  ++  ++E E    L A+ 
Sbjct: 113 DRRLNHRPEVIAGVLERECAEQLTAFF 139


>gi|511885|gb|AAA96138.1| nitrogen fixation protein [Bradyrhizobium japonicum]
          Length = 142

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 54/146 (36%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA--- 63
           M  AL+ +    G     P + C++V++  VI        T Y    HAE+ AL EA   
Sbjct: 1   MDLALKTAENA-GKAGEVP-IGCVVVRNYEVIATAANRTLTDYDPTAHAEIVALREAAKK 58

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW--- 118
              E       YVTLEPC        CA  I    +RR+     DP       G+++   
Sbjct: 59  IGSERLVDCDLYVTLEPC------TMCAGAISFARVRRLYYGAADPKGGAVESGVRFFAS 112

Query: 119 --LSQKGIIVDRMMESEGKIFLHAYL 142
                   +   + ESE    L  + 
Sbjct: 113 PTCHHAPDVYSGVGESEAARLLKEFF 138


>gi|217076231|ref|YP_002333947.1| deoxycytidylate deaminase [Thermosipho africanus TCF52B]
 gi|217036084|gb|ACJ74606.1| deoxycytidylate deaminase [Thermosipho africanus TCF52B]
          Length = 170

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 53/134 (39%), Gaps = 39/134 (29%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP---------- 53
           S+D+ F+  A   +      T  +  V  +IVKD  ++  G      G P          
Sbjct: 21  SWDSYFLKIAEIIATRS---TCFHRKVGAVIVKDKRILATGYNQPPSGFPHCDDIGCIRD 77

Query: 54  ----------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  AL +A   G    GAT YVT +PCS       CA+ II 
Sbjct: 78  DLNIKSGENQEVCYALHAEQNALMQAAKFGISTDGATIYVTHKPCSV------CARLIIN 131

Query: 95  CGIRRVVVCVDDPD 108
            GI++VV   D PD
Sbjct: 132 AGIKKVVYLNDYPD 145


>gi|166033064|ref|ZP_02235893.1| hypothetical protein DORFOR_02786 [Dorea formicigenerans ATCC
           27755]
 gi|166027421|gb|EDR46178.1| hypothetical protein DORFOR_02786 [Dorea formicigenerans ATCC
           27755]
          Length = 162

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 61/161 (37%), Gaps = 35/161 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
           ++D  FM  A + S   +     N  V C IV +D  ++  G                  
Sbjct: 10  NWDEYFMGVA-KLS--GLRSKDPNTQVGCCIVSQDNKILSMGYNGLPKGCSDDEFPWVRE 66

Query: 47  ------TAYGGCPHAEVQALEE-AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    H+E+ A+    G    GA  YV+L PC+       CA+ II+ GI+ 
Sbjct: 67  GEDPLKTKYVYTVHSELNAILNFRGGSLEGAKLYVSLFPCNE------CAKAIIQSGIKE 120

Query: 100 VVVCVDDPDVRVS-GRGLQWLSQKGIIVDRMMESEGKIFLH 139
           V+   +  D   +    ++     G+   +   S+ KI + 
Sbjct: 121 VIYDCNKYDGSTAVQASMRMFDAAGVAYHQYKRSDRKIEIE 161


>gi|313886388|ref|ZP_07820111.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|332300169|ref|YP_004442090.1| CMP/dCMP deaminase zinc-binding protein [Porphyromonas
           asaccharolytica DSM 20707]
 gi|312924164|gb|EFR34950.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|332177232|gb|AEE12922.1| CMP/dCMP deaminase zinc-binding protein [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 153

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 52/148 (35%), Gaps = 17/148 (11%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
            D R M  AL+ +          P +  +I     ++ +             HAE+ A+ 
Sbjct: 11  LDERMMQLALQQA-LVAYEADEVP-IGAVIAVGTRILAKSHNQVELLNDPTAHAEMLAIT 68

Query: 62  EAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           +A     G      T YVT+EPC      P C   +    I R+V    DP         
Sbjct: 69  QATAAIGGKYLPQCTLYVTVEPC------PMCMGALRWTQIGRIVYGTADPKGGYMHYSD 122

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTR 144
                K IIV  + E E +  + +Y  R
Sbjct: 123 ALPHPKSIIVGGVCEEECRELMVSYFRR 150


>gi|225628666|ref|ZP_03786700.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           ceti str. Cudo]
 gi|237816711|ref|ZP_04595703.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           abortus str. 2308 A]
 gi|225616512|gb|EEH13560.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           ceti str. Cudo]
 gi|237787524|gb|EEP61740.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           abortus str. 2308 A]
          Length = 171

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 52/146 (35%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG-- 64
           M  AL  +    G     P +  +IV+DG +I R             HAE+  + +AG  
Sbjct: 30  MDIALEEAH-AAGERGEVP-IGAVIVRDGEIIARAGNRTREFNDVTAHAEILTIRQAGEM 87

Query: 65  ---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW--- 118
              E       YVTLEPC+       CA  I    IRR+     DP       G ++   
Sbjct: 88  LGSERLIDCDLYVTLEPCAM------CAAAISFARIRRLYYGASDPKGGGIEHGGRFYTQ 141

Query: 119 --LSQKGIIVDRMMESEGKIFLHAYL 142
                   I     E++ +  L  + 
Sbjct: 142 PTCHHAPEIYPGFCEADARKILKDFF 167


>gi|242242866|ref|ZP_04797311.1| competence protein ComEB [Staphylococcus epidermidis W23144]
 gi|242233679|gb|EES35991.1| competence protein ComEB [Staphylococcus epidermidis W23144]
 gi|319400925|gb|EFV89144.1| comE operon protein 2 [Staphylococcus epidermidis FRI909]
          Length = 153

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 52/148 (35%), Gaps = 34/148 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M    ++  FM+ +   +           SV   IVKD  +I  G               
Sbjct: 1   MERIKWEEYFMAQSHLLALRSTCRRL---SVGATIVKDNRIIAGGYNGSVAGEVHCIDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G    GAT YVT  PC +      C + II+ GI+
Sbjct: 58  CLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLN------CTKSIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            +    D  +   +   ++ L Q GI  
Sbjct: 112 TIYYAQDYHNHDYA---IKLLKQSGIEY 136


>gi|241764142|ref|ZP_04762178.1| bifunctional deaminase-reductase domain protein [Acidovorax
           delafieldii 2AN]
 gi|241366548|gb|EER61041.1| bifunctional deaminase-reductase domain protein [Acidovorax
           delafieldii 2AN]
          Length = 247

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 16/152 (10%)

Query: 221 RIILDPHFKLSLDSKIIK--TALLAPVI-IVTENDDPVLALAFRKKNINIIYCDCRDL-- 275
            + +D   K+  ++  +K      A +I ++TE          RK  I+ I      L  
Sbjct: 88  YVSVDASGKIGWETNTLKYEDRPAAHIIEVLTEKASNAYRAFLRKMEISYIIAGKDQLDC 147

Query: 276 ---KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
               + L  L    + +L+V GG  +  SF+ + LVD + L  + +  GE    +  E+ 
Sbjct: 148 KLAAEKLKALF--QIETLMVSGGGFINWSFLQAGLVDELSLVIAPLADGENNTVTLFEKS 205

Query: 333 YLEKNFMCVRRDY------FGSDVCLEYIGKN 358
                   V           G  + L Y+ KN
Sbjct: 206 DYLPAHAPVEFTLKSAEVGKGDSIWLRYVVKN 237


>gi|27468193|ref|NP_764830.1| putative dCMP deaminase [Staphylococcus epidermidis ATCC 12228]
 gi|57867051|ref|YP_188732.1| comE operon protein 2 [Staphylococcus epidermidis RP62A]
 gi|293366451|ref|ZP_06613128.1| ComE operon protein 2 [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27315739|gb|AAO04874.1|AE016748_108 putative dCMP deaminase [Staphylococcus epidermidis ATCC 12228]
 gi|57637709|gb|AAW54497.1| comE operon protein 2 [Staphylococcus epidermidis RP62A]
 gi|291319220|gb|EFE59589.1| ComE operon protein 2 [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329725366|gb|EGG61849.1| ComE operon protein 2 [Staphylococcus epidermidis VCU144]
 gi|329735176|gb|EGG71468.1| ComE operon protein 2 [Staphylococcus epidermidis VCU045]
          Length = 153

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 53/148 (35%), Gaps = 34/148 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M    ++  FM+ +   +      T    SV   IVKD  +I  G               
Sbjct: 1   MERIKWEEYFMAQSHLLALRS---TCKRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G    GAT YVT  PC +      C + II+ GI+
Sbjct: 58  CLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLN------CTKSIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            +    D  +   +   ++ L Q GI  
Sbjct: 112 TIYYAQDYHN---NDYAIKLLKQSGIEY 136


>gi|27904732|ref|NP_777858.1| putative deaminase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|38372581|sp|Q89AM8|Y236_BUCBP RecName: Full=Uncharacterized protein bbp_236
 gi|27904129|gb|AAO26963.1| putative deaminase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 162

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 26/158 (16%)

Query: 3   VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
           +   D  FM  A+  ++     G       V  ++V +  +IG+G+ +    +    HAE
Sbjct: 1   MHDSDKYFMKCAIFLAKISEMIGEV----PVGAVLVFNNTIIGKGLNSSILNHDPTAHAE 56

Query: 57  VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           ++AL    +  +       T YVTLEPC        C   II   I R+V      +++ 
Sbjct: 57  IKALRNGAKFLKNYRLLHTTLYVTLEPCIM------CYGAIIHSRISRLVFGAKYKNLQK 110

Query: 112 SGRGLQWL-----SQKGIIVDRMMESEGKIFLHAYLTR 144
                         +K  I   ++ESE    L ++  R
Sbjct: 111 YICCKNHFFINKNFRKISITQEVLESECSNLLSSFFKR 148


>gi|83309336|ref|YP_419600.1| cytosine/adenosine deaminase [Magnetospirillum magneticum AMB-1]
 gi|82944177|dbj|BAE49041.1| Cytosine/adenosine deaminase [Magnetospirillum magneticum AMB-1]
          Length = 148

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 37/102 (36%), Gaps = 15/102 (14%)

Query: 30  SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-----EEARGATAYVTLEPCS 80
            V  +IVKDG VI +             HAE+ AL  A      +       YVTLEPC 
Sbjct: 24  PVGAVIVKDGQVIAQAGNRVEELGDSTAHAEMLALRAATLFLGDKRLEDCDLYVTLEPC- 82

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                P CA  I    IRR+     DP       G +     
Sbjct: 83  -----PMCAAAISLARIRRLYFGAYDPKSGGVEHGAKVFDHA 119


>gi|288803361|ref|ZP_06408794.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
           melaninogenica D18]
 gi|288334181|gb|EFC72623.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
           melaninogenica D18]
          Length = 166

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 32/149 (21%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--------------- 48
           ++ D R++  A  ++            V  L+VKD ++I  G                  
Sbjct: 22  AAVDYRYLRMARIWAENSYCKRR---QVGALVVKDKMIISDGYNGTPSGFENICEDESGV 78

Query: 49  -YGGCPHAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                 HAE  A   L  +G  + G+T YVT  PC        CA+ II+ GIRRVV   
Sbjct: 79  TKPYVLHAEANAITKLARSGNNSEGSTLYVTASPCIE------CAKLIIQAGIRRVVYAE 132

Query: 105 DDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
                     G+  L++ G+ V+ +   +
Sbjct: 133 KYRLT----DGIDLLTRAGVEVEYISLED 157


>gi|297570087|ref|YP_003691431.1| CMP/dCMP deaminase zinc-binding protein [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296926002|gb|ADH86812.1| CMP/dCMP deaminase zinc-binding protein [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 173

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 48/119 (40%), Gaps = 23/119 (19%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------H 54
           M  S     FM  AL  +R  V L +    V  +IV  G V+  G     G        H
Sbjct: 1   MDQSEQHHYFMGLALEQAR--VALQAGEFPVGAVIVAGGRVVAEGNRQNSGGTAPTELDH 58

Query: 55  AEVQALEEAGEEAR-------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           AE+ AL   G  AR       G T Y T+EPC        C   ++  G+RR+V   +D
Sbjct: 59  AEIVALR--GLLARQPEIERGGLTLYATMEPCLM------CYATLLLNGVRRIVYAYED 109


>gi|218961643|ref|YP_001741418.1| cytidine/deoxycytidylate deaminase family protein [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730300|emb|CAO81212.1| cytidine/deoxycytidylate deaminase family protein [Candidatus
           Cloacamonas acidaminovorans]
          Length = 157

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 52/155 (33%), Gaps = 43/155 (27%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP------ 53
           M   S+   FM  A   S+    L      V  ++++D  +I  G      G P      
Sbjct: 1   MERPSWQQYFMEMAYLASKRSTCLRRK---VGAVLIRDNQIIATGYNGSPKGVPHCEDIG 57

Query: 54  --------------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE  A+ +A   G   RGA  Y T +PCS       CA+
Sbjct: 58  CLREQQKVPSGKNQELCRGVHAEQNAIIQAAINGSSTRGAILYCTNQPCSI------CAR 111

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            II   I+ V +    PD        +   + G+ 
Sbjct: 112 LIINAEIKTVYIAEPYPDELGE----ELFREAGVE 142


>gi|330903491|gb|EGH34063.1| cytosine deaminase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 125

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 18/128 (14%)

Query: 30  SVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGEEA----RGATAYVTLEPCSH 81
            +  +I   G +IGRG            H E+ ALE AG +     R +  Y TL PC+ 
Sbjct: 2   PIGSVIGHGGKIIGRGHNRRVQEGSATKHGEMDALENAGRQPASVYRDSVLYTTLSPCAM 61

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
                 C+  I+  GIR+V++  ++  +       + L  +G+ +D +   E    +  +
Sbjct: 62  ------CSGAILLYGIRKVIIGENESFMGEE----ELLRSRGVQIDVLDNPECTHMMKDF 111

Query: 142 LTRQVEKR 149
           +  + E  
Sbjct: 112 IASKPELW 119


>gi|218261316|ref|ZP_03476184.1| hypothetical protein PRABACTJOHN_01850 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224097|gb|EEC96747.1| hypothetical protein PRABACTJOHN_01850 [Parabacteroides johnsonii
           DSM 18315]
          Length = 144

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 55/147 (37%), Gaps = 38/147 (25%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
             D R++  A   + W          V  LIV+D ++I  G     G P           
Sbjct: 10  ELDKRYLRMA---AVWAENSYCKRRQVGALIVRDQMIISDGY---NGTPSGFENVCEDEN 63

Query: 54  --------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  A+     +   ++ AT YVT  PC        CA+ II+ GI+RVV 
Sbjct: 64  NVTKPYVLHAEANAITKVAASSNSSKDATIYVTSAPCIE------CAKLIIQSGIKRVVY 117

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRM 129
                       G   L + G+I+D +
Sbjct: 118 SEKYR----VEDGCNLLRRAGVIIDYI 140


>gi|289450534|ref|YP_003475019.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185081|gb|ADC91506.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 149

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 41/126 (32%), Gaps = 25/126 (19%)

Query: 11  MSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           M  AL  +    R           +  +IV  G ++  G  +         HAE+ A+ +
Sbjct: 1   MRRALHQAALSERKGEA------PIGAVIVYQGRIVAHGRNSRQNSNLITGHAEISAILQ 54

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A  + +         YVTLEPC        CA  I +  IR V     DP          
Sbjct: 55  AERKLKSWRLPECDIYVTLEPCIM------CAGAIQQARIRHVYFGASDPKGGAVVSCGN 108

Query: 118 WLSQKG 123
                G
Sbjct: 109 IFDLPG 114


>gi|326315881|ref|YP_004233553.1| CMP/dCMP deaminase zinc-binding protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372717|gb|ADX44986.1| CMP/dCMP deaminase zinc-binding protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 169

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 48/141 (34%), Gaps = 18/141 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----CPHAE 56
           P+   D R++  A+  +         N     +IV  DG V+     A G       HAE
Sbjct: 11  PLDERDGRYLRQAIALADKARAR--GNRPFGAVIVGDDGTVLAEAWNANGETGDCTAHAE 68

Query: 57  VQAL-----EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
             A+       A E    AT Y + EPC        CA  I    I RVV  +D   +R 
Sbjct: 69  TSAIRVASPRHAREVLARATLYSSGEPC------VMCAGAIFWANIGRVVYGIDAVRLRG 122

Query: 112 SGRGLQWLSQKGIIVDRMMES 132
                Q      +    +  +
Sbjct: 123 FRGERQDQRDAELSCRDVFAA 143


>gi|89890037|ref|ZP_01201548.1| deoxycytidylate deaminase [Flavobacteria bacterium BBFL7]
 gi|89518310|gb|EAS20966.1| deoxycytidylate deaminase [Flavobacteria bacterium BBFL7]
          Length = 141

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 40/149 (26%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPS-VACLIVKDGIVIGRGVTAYGGCP----------- 53
           +D  ++  A  +++    L+  N   V  LIV+D ++I  G     G P           
Sbjct: 9   YDIAYLKMAAEWAK----LSHCNRRQVGALIVRDRMIISDGY---NGTPSGFENFCEDEE 61

Query: 54  --------HAEVQA-LEEAG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  A L+ AG  +   GAT Y+T+ PC        C++ I + GI+RVV 
Sbjct: 62  GYTKWYVLHAEANAILKVAGSTQSCAGATLYITMSPC------KDCSKLIHQSGIKRVVY 115

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
                D      GLQ+L + G+ V+++ +
Sbjct: 116 VEGYKD----DSGLQFLQKAGVEVEQINQ 140


>gi|229817012|ref|ZP_04447294.1| hypothetical protein BIFANG_02267 [Bifidobacterium angulatum DSM
           20098]
 gi|229785757|gb|EEP21871.1| hypothetical protein BIFANG_02267 [Bifidobacterium angulatum DSM
           20098]
          Length = 147

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 53/149 (35%), Gaps = 21/149 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY--GGCP--HAEVQALE 61
           D + M  AL  +         +  V  L++   G + G G       G P  HAEV A+ 
Sbjct: 3   DDKAMRCALELAHRAA--EHGDVPVGALVLDAHGHIAGEGWNTREVDGDPLAHAEVAAMR 60

Query: 62  EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           EA   G      T  VTLEPC      P CA   I+  I R+V    D  +   G     
Sbjct: 61  EAAEHGWNLADCTLVVTLEPC------PMCAGACIQTHIGRIVFGAWDAKLGACGSVWDI 114

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYL 142
                +     +   +ME E    L  + 
Sbjct: 115 PRDPHVGSVPEVYGGVMERECAQVLSEFF 143


>gi|49483836|ref|YP_041060.1| deaminase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425713|ref|ZP_05602137.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428374|ref|ZP_05604772.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431011|ref|ZP_05607391.1| competence protein ComEB [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433699|ref|ZP_05610057.1| competence protein ComEB [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436613|ref|ZP_05612657.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus M876]
 gi|282904170|ref|ZP_06312058.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus C160]
 gi|282905997|ref|ZP_06313852.1| competence protein ComEB [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908908|ref|ZP_06316726.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911226|ref|ZP_06319028.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914395|ref|ZP_06322181.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus M899]
 gi|282919364|ref|ZP_06327099.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus C427]
 gi|282924689|ref|ZP_06332357.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus C101]
 gi|283958352|ref|ZP_06375803.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293503469|ref|ZP_06667316.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510486|ref|ZP_06669192.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus M809]
 gi|293531026|ref|ZP_06671708.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus M1015]
 gi|49241965|emb|CAG40660.1| putative deaminase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257271407|gb|EEV03553.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275215|gb|EEV06702.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278441|gb|EEV09077.1| competence protein ComEB [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281792|gb|EEV11929.1| competence protein ComEB [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283964|gb|EEV14087.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus M876]
 gi|282313524|gb|EFB43919.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus C101]
 gi|282317174|gb|EFB47548.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus C427]
 gi|282321576|gb|EFB51901.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus M899]
 gi|282324921|gb|EFB55231.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327172|gb|EFB57467.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331289|gb|EFB60803.1| competence protein ComEB [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595788|gb|EFC00752.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus C160]
 gi|283790501|gb|EFC29318.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920294|gb|EFD97360.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus M1015]
 gi|291095135|gb|EFE25400.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466850|gb|EFF09370.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus M809]
 gi|315195491|gb|EFU25878.1| putative deaminase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 153

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 52/148 (35%), Gaps = 34/148 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M    ++  FM+ +   +           SV   IVKD  +I  G               
Sbjct: 1   MERIKWEEYFMAQSHLLALRSTCQRL---SVGATIVKDNRIIAGGYNGSVAGEVHCIDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G    GAT YVT  PC +      C + II+ GI+
Sbjct: 58  CLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLN------CTKSIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           R+    D  +   + +    L Q GI  
Sbjct: 112 RIYYAEDYHNHEYATK---LLKQSGIEF 136


>gi|15924579|ref|NP_372113.1| late competence operon required for DNA binding and uptake
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927169|ref|NP_374702.1| late competence operon required for DNA binding and uptake comEB
           [Staphylococcus aureus subsp. aureus N315]
 gi|21283269|ref|NP_646357.1| late competence operon required for DNA binding and uptake comEB
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49486423|ref|YP_043644.1| putative deaminase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|82751191|ref|YP_416932.1| late competence deaminase protein [Staphylococcus aureus RF122]
 gi|151221703|ref|YP_001332525.1| competence protein ComEB required for DNA binding and uptake
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156979907|ref|YP_001442166.1| late competence operon required for DNA binding and uptake
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|255006374|ref|ZP_05144975.2| competence protein ComEB [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257793665|ref|ZP_05642644.1| ComE operon protein 2 [Staphylococcus aureus A9781]
 gi|258411036|ref|ZP_05681316.1| competence protein ComEB [Staphylococcus aureus A9763]
 gi|258420161|ref|ZP_05683116.1| ComE operon protein 2 [Staphylococcus aureus A9719]
 gi|258424016|ref|ZP_05686898.1| ComE operon protein 2 [Staphylococcus aureus A9635]
 gi|258437420|ref|ZP_05689404.1| competence protein ComEB [Staphylococcus aureus A9299]
 gi|258443626|ref|ZP_05691965.1| competence protein ComEB [Staphylococcus aureus A8115]
 gi|258446834|ref|ZP_05694988.1| competence protein ComEB [Staphylococcus aureus A6300]
 gi|258448748|ref|ZP_05696860.1| competence protein ComEB [Staphylococcus aureus A6224]
 gi|258450583|ref|ZP_05698645.1| late competence operon required for DNA binding and uptake
           [Staphylococcus aureus A5948]
 gi|258453565|ref|ZP_05701543.1| late competence operon required for DNA binding and uptake
           [Staphylococcus aureus A5937]
 gi|262048588|ref|ZP_06021471.1| late competence operon required for DNA binding and uptake comEB
           [Staphylococcus aureus D30]
 gi|262051247|ref|ZP_06023471.1| late competence operon required for DNA binding and uptake comEB
           [Staphylococcus aureus 930918-3]
 gi|282893090|ref|ZP_06301324.1| ComE operon protein 2 [Staphylococcus aureus A8117]
 gi|282916859|ref|ZP_06324617.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus D139]
 gi|282920137|ref|ZP_06327862.1| ComE operon protein 2 [Staphylococcus aureus A9765]
 gi|282928222|ref|ZP_06335827.1| ComE operon protein 2 [Staphylococcus aureus A10102]
 gi|283770664|ref|ZP_06343556.1| dCMP deaminase [Staphylococcus aureus subsp. aureus H19]
 gi|296276607|ref|ZP_06859114.1| competence protein ComEB [Staphylococcus aureus subsp. aureus MR1]
 gi|13701387|dbj|BAB42681.1| late competence operon required for DNA binding and uptake comEB
           [Staphylococcus aureus subsp. aureus N315]
 gi|14247360|dbj|BAB57751.1| late competence operon required for DNA binding and uptake
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|21204709|dbj|BAB95405.1| late competence operon required for DNA binding and uptake comEB
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49244866|emb|CAG43327.1| putative deaminase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|82656722|emb|CAI81150.1| late competence deaminase protein [Staphylococcus aureus RF122]
 gi|150374503|dbj|BAF67763.1| competence protein ComEB required for DNA binding and uptake
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156722042|dbj|BAF78459.1| late competence operon required for DNA binding and uptake
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|257787637|gb|EEV25977.1| ComE operon protein 2 [Staphylococcus aureus A9781]
 gi|257840186|gb|EEV64650.1| competence protein ComEB [Staphylococcus aureus A9763]
 gi|257843872|gb|EEV68266.1| ComE operon protein 2 [Staphylococcus aureus A9719]
 gi|257845637|gb|EEV69669.1| ComE operon protein 2 [Staphylococcus aureus A9635]
 gi|257848625|gb|EEV72613.1| competence protein ComEB [Staphylococcus aureus A9299]
 gi|257851032|gb|EEV74975.1| competence protein ComEB [Staphylococcus aureus A8115]
 gi|257854409|gb|EEV77358.1| competence protein ComEB [Staphylococcus aureus A6300]
 gi|257858026|gb|EEV80915.1| competence protein ComEB [Staphylococcus aureus A6224]
 gi|257861741|gb|EEV84540.1| late competence operon required for DNA binding and uptake
           [Staphylococcus aureus A5948]
 gi|257864296|gb|EEV87046.1| late competence operon required for DNA binding and uptake
           [Staphylococcus aureus A5937]
 gi|259160884|gb|EEW45904.1| late competence operon required for DNA binding and uptake comEB
           [Staphylococcus aureus 930918-3]
 gi|259163235|gb|EEW47794.1| late competence operon required for DNA binding and uptake comEB
           [Staphylococcus aureus D30]
 gi|269941078|emb|CBI49462.1| putative deaminase [Staphylococcus aureus subsp. aureus TW20]
 gi|282319346|gb|EFB49698.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus D139]
 gi|282590029|gb|EFB95111.1| ComE operon protein 2 [Staphylococcus aureus A10102]
 gi|282594485|gb|EFB99470.1| ComE operon protein 2 [Staphylococcus aureus A9765]
 gi|282764408|gb|EFC04534.1| ComE operon protein 2 [Staphylococcus aureus A8117]
 gi|283460811|gb|EFC07901.1| dCMP deaminase [Staphylococcus aureus subsp. aureus H19]
 gi|285817271|gb|ADC37758.1| dCMP deaminase; Late competence protein ComEB [Staphylococcus
           aureus 04-02981]
 gi|298694870|gb|ADI98092.1| dCMP deaminase [Staphylococcus aureus subsp. aureus ED133]
 gi|302751418|gb|ADL65595.1| late competence operon required for DNA binding and uptake comEB
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|312829976|emb|CBX34818.1| comE operon protein 2 [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|323438554|gb|EGA96301.1| late competence deaminase protein [Staphylococcus aureus O11]
 gi|323442793|gb|EGB00418.1| late competence deaminase protein [Staphylococcus aureus O46]
 gi|329314264|gb|AEB88677.1| Possible competence protein ComEB [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329727571|gb|EGG64027.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus 21172]
 gi|329728343|gb|EGG64780.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus 21189]
 gi|329733117|gb|EGG69454.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus 21193]
          Length = 153

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 52/148 (35%), Gaps = 34/148 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M    ++  FM+ +   +           SV   IVKD  +I  G               
Sbjct: 1   MERIKWEEYFMAQSHLLALRSTCQRL---SVGATIVKDNRIIAGGYNGSVAGEVHCIDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G    GAT YVT  PC +      C + II+ GI+
Sbjct: 58  CLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLN------CTKSIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           R+    D  +   + +    L Q GI  
Sbjct: 112 RIYYAEDYHNHEYATK---LLKQSGIEF 136


>gi|218295213|ref|ZP_03496049.1| tRNA(Ile)-lysidine synthetase [Thermus aquaticus Y51MC23]
 gi|218244416|gb|EED10941.1| tRNA(Ile)-lysidine synthetase [Thermus aquaticus Y51MC23]
          Length = 509

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 54/143 (37%), Gaps = 16/143 (11%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGR---GVTAYGGCPHAEVQALEEAGEEA 67
           M  AL  +R           V  ++V +G V G             HAE+  L + G+ A
Sbjct: 378 MGLALEEARKA--YAEGEVPVGAVLVLEGEVHGERNRVEAMEDPTAHAEMLLLRKLGKRA 435

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           RG   YVTLEPC        C   ++E G+  VV  V++    +    L    Q G +  
Sbjct: 436 RGGRLYVTLEPC------RMCHHALMEAGV-EVVYGVEN----LKEGALTRYGQGGRMRG 484

Query: 128 RMMESEGKIFLHAYLTRQVEKRS 150
            + E E    L  +  R  E   
Sbjct: 485 GLREGECAKLLRDFFARLREGCR 507


>gi|18977970|ref|NP_579327.1| dCMP deaminase [Pyrococcus furiosus DSM 3638]
 gi|18893746|gb|AAL81722.1| dCMP deaminase [Pyrococcus furiosus DSM 3638]
          Length = 185

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 50/146 (34%), Gaps = 32/146 (21%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
           D  FM  A   S      T     V  + VKDG ++  G                     
Sbjct: 23  DEYFMLIAKLVSLRA---TCPRLRVGAVAVKDGYILATGYNGAPRSMDHCIDKGCILVNG 79

Query: 54  ------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                 HAE   +  A   G    GAT YVT  PC        C + +I  GI+ +V   
Sbjct: 80  HCHRAVHAEQNVIAMAARKGISLEGATLYVTHFPCD------TCFKLLINAGIKEIVYEE 133

Query: 105 DDPDVRVSGRGLQWLSQKGIIVDRMM 130
             P+  V+   L+   +KG+I  R  
Sbjct: 134 MYPN-EVTEMLLKEAQEKGLIKIRQF 158


>gi|294101414|ref|YP_003553272.1| CMP/dCMP deaminase zinc-binding protein [Aminobacterium colombiense
           DSM 12261]
 gi|293616394|gb|ADE56548.1| CMP/dCMP deaminase zinc-binding protein [Aminobacterium colombiense
           DSM 12261]
          Length = 168

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 47/139 (33%), Gaps = 39/139 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
            +D+ FM  A   +     L      V  +IV+D  +I  G                   
Sbjct: 7   DWDSYFMMIAAVAATRGTCLRRK---VGAVIVRDLQIISTGYNGAPKGLPHCSEVGCLRD 63

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE+ A+ +A   G    GA  Y T EPCS       C + II 
Sbjct: 64  KLGIPSGERHEICRGSHAEINAIAQAAAVGTRTEGAVLYCTHEPCSF------CTKAIIN 117

Query: 95  CGIRRVVVCVDDPDVRVSG 113
            GIRR+V     PD   S 
Sbjct: 118 AGIRRIVFVYPYPDALASE 136


>gi|327400004|ref|YP_004340843.1| CMP/dCMP deaminase zinc-binding protein [Archaeoglobus veneficus
           SNP6]
 gi|327315512|gb|AEA46128.1| CMP/dCMP deaminase zinc-binding protein [Archaeoglobus veneficus
           SNP6]
          Length = 159

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 54/155 (34%), Gaps = 43/155 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
             D  FM  A   +     L      V  LIVKD  ++  G                   
Sbjct: 8   DLDHYFMEIARVVASRSTCLRQK---VGALIVKDKRILATGYNGAPSGLPHCLEIGCLRK 64

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G    G T Y T +PC        CA+ II 
Sbjct: 65  ELNVPSGERHELCRAVHAEQNAIIQAAVHGVSIVGGTLYTTHQPCIM------CAKMIIN 118

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            GI++VV      D    GRGL++L + GI V  M
Sbjct: 119 AGIKKVVYGRRYAD----GRGLEFLKEAGIEVVYM 149


>gi|328463817|gb|EGF35361.1| guanine deaminase [Lactobacillus rhamnosus MTCC 5462]
          Length = 127

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 16/109 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG- 64
           FM+ A   ++ +V  +   P   C+IVK+G VI R        +    H E+ A+ +AG 
Sbjct: 6   FMAMANEEAKANVNGSDGGP-FGCVIVKNGQVISRAHNQVLVDHDPTAHGEITAIRKAGQ 64

Query: 65  ----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
                +  G   Y +  PC      P C   II   I++V       D 
Sbjct: 65  ALGTHDLSGCELYTSAMPC------PMCLSAIIWANIKQVYYGNTADDA 107


>gi|325268984|ref|ZP_08135605.1| cytidine/deoxycytidylate deaminase [Prevotella multiformis DSM
           16608]
 gi|324988605|gb|EGC20567.1| cytidine/deoxycytidylate deaminase [Prevotella multiformis DSM
           16608]
          Length = 175

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 57/148 (38%), Gaps = 32/148 (21%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--------------- 48
           ++ D R++  A  ++            V  L+VKD ++I  G                  
Sbjct: 23  TAVDYRYLRMARIWAENSYCRRR---QVGALVVKDKMIISDGYNGTPSGFENVCEDEAGV 79

Query: 49  -YGGCPHAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                 HAE  A   L  +G  + G+T YVT  PC        C++ II+ GIRRVV   
Sbjct: 80  TKPYVLHAEANAITKLARSGNNSDGSTLYVTASPCIE------CSKLIIQAGIRRVVYAE 133

Query: 105 DDPDVRVSGRGLQWLSQKGIIVDRMMES 132
               +     G+  L + GI V+ +   
Sbjct: 134 KYRLM----DGIDLLERAGIEVEFLRLE 157


>gi|192291626|ref|YP_001992231.1| CMP/dCMP deaminase zinc-binding [Rhodopseudomonas palustris TIE-1]
 gi|192285375|gb|ACF01756.1| CMP/dCMP deaminase zinc-binding [Rhodopseudomonas palustris TIE-1]
          Length = 214

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 9/97 (9%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
           +  D R+M+ A+   R    +  T  +   +IV+DG V+     +         HAEV A
Sbjct: 58  TEQDRRYMTQAIELMRKAGVVEKTGGAFGAVIVRDGEVLSATGNSVLRDNDPSAHAEVNA 117

Query: 60  LEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQF 91
           +  A ++      RGAT Y + E C     +   A+ 
Sbjct: 118 IRAACKKVGAPNLRGATMYTSCECCPMCYATAYWARL 154


>gi|219557313|ref|ZP_03536389.1| bifunctional riboflavin biosynthesis protein ribG:
           diaminohydroxyphosphoribosylaminopyrimidine deaminase +
           [Mycobacterium tuberculosis T17]
 gi|289569426|ref|ZP_06449653.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           T17]
 gi|289543180|gb|EFD46828.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
           T17]
          Length = 91

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 8/94 (8%)

Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           +     +  ++L  L  R  T +L+EGG  +A +F+ +  ++ I+ Y + I++G    P 
Sbjct: 1   MMIRTHEPMEVLRALSDR--TDVLLEGGPTLAGAFLRAGAINRILAYVAPILLGG---PV 55

Query: 328 PLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
              +     N     R  F S   +E +G +L L
Sbjct: 56  TAVDDVGVSNITNALRWQFDS---VEKVGPDLLL 86


>gi|223044386|ref|ZP_03614420.1| ComE operon protein 2 [Staphylococcus capitis SK14]
 gi|222442255|gb|EEE48366.1| ComE operon protein 2 [Staphylococcus capitis SK14]
          Length = 153

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 53/148 (35%), Gaps = 34/148 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M    ++  FM+ +   +           SV   IVKD  +I  G               
Sbjct: 1   MERIKWEEYFMAQSHLLALRSTCQRL---SVGATIVKDNRIIAGGYNGSVAGEVHCIDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G    GAT YVT  PC +      C + II+ GI+
Sbjct: 58  CLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLN------CTKSIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            +    D  +   +   ++ L+Q GI  
Sbjct: 112 TIYYAEDYHNHNYA---IKLLNQSGIEY 136


>gi|119511953|ref|ZP_01631050.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Nodularia
           spumigena CCY9414]
 gi|119463373|gb|EAW44313.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Nodularia
           spumigena CCY9414]
          Length = 143

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 36/110 (32%), Gaps = 21/110 (19%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
             FM  AL  ++              +IVK   V+        G      HAE+  +   
Sbjct: 4   EYFMQIALEEAKKGDAPY------GAVIVKHQEVVAVAHNTVKGNSDPSAHAEINVIRSL 57

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
             + +     G + Y T EPC      P CA   +  GI  +V      D
Sbjct: 58  TAKLKSPSLEGYSIYTTGEPC------PMCATACVWAGISEIVYGASIQD 101


>gi|15598665|ref|NP_252159.1| hypothetical protein PA3469 [Pseudomonas aeruginosa PAO1]
 gi|218890283|ref|YP_002439147.1| putative dihydrofolate reductase [Pseudomonas aeruginosa LESB58]
 gi|254242155|ref|ZP_04935477.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|9949613|gb|AAG06857.1|AE004768_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|126195533|gb|EAZ59596.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218770506|emb|CAW26271.1| putative dihydrofolate reductase [Pseudomonas aeruginosa LESB58]
          Length = 180

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 3/97 (3%)

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
           VL    R+  +  +       ++ L  L  +G   + + GG ++A S + + L+D +I+ 
Sbjct: 74  VLTRNPRESAVEGVELRHDTPQEGLARLGEQGCRRVWLAGGGSLAGSCLAAGLLDEVIVS 133

Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
               ++G G    PL  G  E+    + +  + S + 
Sbjct: 134 VIPQLLGAG---IPLFAGGRERRLQLLEQHGYNSGIV 167


>gi|282881525|ref|ZP_06290195.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella timonensis CRIS 5C-B1]
 gi|281304636|gb|EFA96726.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella timonensis CRIS 5C-B1]
          Length = 140

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 53/146 (36%), Gaps = 38/146 (26%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
            D R++  A  ++            V  L+VKD  +I  G     G P            
Sbjct: 10  LDQRYLRMARIWAENSYCQRR---QVGALVVKDQRIISDGY---NGTPSGFENQCEDEQG 63

Query: 54  -------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A   L  +   + GAT YVT  PC        CA+ II+ GI+RVV  
Sbjct: 64  VTHPYVLHAEANAITKLARSSNNSDGATLYVTASPCIE------CAKLIIQAGIKRVVYG 117

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRM 129
                      GL  L +  I V+ +
Sbjct: 118 EKYRL----DDGLNLLKKANIKVEYL 139


>gi|301096603|ref|XP_002897398.1| tRNA-specific adenosine deaminase, putative [Phytophthora infestans
           T30-4]
 gi|262107089|gb|EEY65141.1| tRNA-specific adenosine deaminase, putative [Phytophthora infestans
           T30-4]
          Length = 130

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 41/132 (31%), Gaps = 20/132 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE- 62
             FM  AL      +        V C+ V  G +I               HAE+ A+E  
Sbjct: 7   EHFMREALLEGERALIRAEV--PVGCVFVHKGEIIASASNRVNELCNATMHAEIVAIEAI 64

Query: 63  -------AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
                  A E     T YVT EPC        CA  +    I+RV     +         
Sbjct: 65  AAKYGDKACEVLADCTLYVTCEPCIM------CAGALAHVSIKRVYFGCHNDRFGGCSSV 118

Query: 116 LQWLSQKGIIVD 127
           L    ++ +  D
Sbjct: 119 LNLHERRCLTGD 130


>gi|134097849|ref|YP_001103510.1| guanine deaminase [Saccharopolyspora erythraea NRRL 2338]
 gi|133910472|emb|CAM00585.1| guanine deaminase [Saccharopolyspora erythraea NRRL 2338]
          Length = 162

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 17/102 (16%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           +M+ A+  +   V           ++VKDG ++  G            HAEV A+  A +
Sbjct: 13  WMARAIELATRSVADGGG--PFGAVVVKDGEIVATGHNQVTTNLDPTAHAEVVAIRNACQ 70

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                +  G     + EPC      P C    +   +  VV 
Sbjct: 71  ALGTFKLDGCVLVTSCEPC------PMCMASALWARMESVVY 106


>gi|110679616|ref|YP_682623.1| cytosine deaminase [Roseobacter denitrificans OCh 114]
 gi|109455732|gb|ABG31937.1| cytosine deaminase [Roseobacter denitrificans OCh 114]
          Length = 147

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 62/153 (40%), Gaps = 18/153 (11%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQ 58
           ++  D R +  A   ++   G       +  ++ + G V+ +G       G P  H E+ 
Sbjct: 1   MNDVDIRMLRIAYDEAK--AGFDEGGCPIGSVLARGGEVVAQGRNQRVQKGDPIAHGEMD 58

Query: 59  ALEEAG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           AL +AG  +  R  T Y +L PC     +      II+ GI RVV+  +    R  G   
Sbjct: 59  ALRKAGRQKSYRDTTLYTSLSPCMMCTGT------IIQFGIPRVVIGEN----RNFGGNE 108

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            +L  KG+ V    + +    +  ++  + +  
Sbjct: 109 DFLRSKGVEVIVADDPDCIALMQRFIREKPDLW 141


>gi|186682609|ref|YP_001865805.1| CMP/dCMP deaminase, zinc-binding [Nostoc punctiforme PCC 73102]
 gi|186465061|gb|ACC80862.1| CMP/dCMP deaminase, zinc-binding [Nostoc punctiforme PCC 73102]
          Length = 141

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 36/110 (32%), Gaps = 21/110 (19%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
             FM  AL  ++              +IVKD  V+               HAE+  +   
Sbjct: 4   EYFMRLALAQAKEGDTPY------GAVIVKDNEVVAVAHNTVSRDNDPSAHAEINVIRSL 57

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
             + +     G + Y T EPC      P CA   +  G+  +V      D
Sbjct: 58  TAKLKNHFLEGYSIYTTCEPC------PMCATACVWSGLSEIVYGASIQD 101


>gi|297560207|ref|YP_003679181.1| bifunctional deaminase-reductase domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296844655|gb|ADH66675.1| bifunctional deaminase-reductase domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 251

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 67/224 (29%), Gaps = 21/224 (9%)

Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL-- 201
                R  +   +  S D         +  +          LLR  +D +LVG GT    
Sbjct: 24  YAYPDRPWLRANMVASLDGAAAGNDGRTEALNTPADLVVFTLLRDLADVVLVGAGTAREA 83

Query: 202 ---ADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
                 P    R        +   P   ++    ++              +++       
Sbjct: 84  GYRRTGPRTGDRAARAVAEGRADRPEIAVVSGSGRVPPLLAEPAGEGGGVLLVTCGAAGN 143

Query: 255 VL----ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
                      +  + +   +  DL+  +  LV RG+  +L EGG  +      + L+D 
Sbjct: 144 EALDRARRTLGEDRVLVCGRERVDLRAAVGALVRRGLPRILCEGGPRLLADVAAAGLLDE 203

Query: 311 IILYRSQIVIG--------EGGIPSPLEEGYLEKNFMCVRRDYF 346
           + L    ++ G             +PL  G L ++   + + + 
Sbjct: 204 MCLTVVPLMAGGVQQRVAVGTAADAPLVPGVLIESEGTLLQRWL 247


>gi|254466209|ref|ZP_05079620.1| cytosine deaminase [Rhodobacterales bacterium Y4I]
 gi|206687117|gb|EDZ47599.1| cytosine deaminase [Rhodobacterales bacterium Y4I]
          Length = 148

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 18/153 (11%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQ 58
           ++  D R +  A   ++   G       +  ++ + G V+ +G       G P  H E+ 
Sbjct: 2   MTDDDRRLLRIAYEEAK--AGFDEGGCPIGSVLARGGQVVAQGRNQRVQKGDPIAHGEMD 59

Query: 59  ALEEAGEEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           AL +AG +   R    Y +L PC     +      I++ GI RVV+     D +  G   
Sbjct: 60  ALRKAGRQTSYRDTVLYTSLSPCMMCSGT------IVQFGIPRVVIG----DTQNFGGNE 109

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           ++L  +G+ V    + +    +  ++  + E  
Sbjct: 110 EFLRARGVEVVIAEDPDCIALMQRFIREKPELW 142


>gi|116617403|ref|YP_817774.1| tRNA-adenosine deaminase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096250|gb|ABJ61401.1| tRNA-adenosine deaminase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 168

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 51/148 (34%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG 64
            FM  AL  ++  +  +     +  +IV +  +I               HAE+ A+E A 
Sbjct: 14  YFMQEALNEAK--IAQSEGEVPIGAVIVYENQMIACAHNHREADQLATAHAELLAIESAN 71

Query: 65  EEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
            + +         +VTLEPC        CA  II   I  V    +DP    +      L
Sbjct: 72  TKLKSWRLENTALFVTLEPCIM------CAGAIINARIPVVYYGANDPKGGATRSLYSLL 125

Query: 120 SQKGI-----IVDRMMESEGKIFLHAYL 142
               +     + + +   E  + L  + 
Sbjct: 126 EDNRLNHMVKVYEGIRGEESGLLLQRFF 153


>gi|224476697|ref|YP_002634303.1| putative deaminase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421304|emb|CAL28118.1| putative deaminase similar to ComEB [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 153

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 55/148 (37%), Gaps = 34/148 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M    ++  FM+ +   S      T T  SV   IVKD  +I  G               
Sbjct: 1   MDRIKWEEYFMAQSHLLSLRS---TCTRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G    GAT YVT  PC +      C + II+ GI+
Sbjct: 58  CLMEDNHCIRTIHAEMNALLQCTKQGVSTEGATIYVTHFPCLN------CTKSIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           R+    D  +   +   +Q L Q GI  
Sbjct: 112 RIYYAQDYHNHEYA---IQLLKQSGIEY 136


>gi|61098160|ref|NP_080024.3| tRNA-specific adenosine deaminase 2 [Mus musculus]
 gi|81885246|sp|Q6P6J0|ADAT2_MOUSE RecName: Full=tRNA-specific adenosine deaminase 2; AltName:
           Full=Deaminase domain-containing protein 1; AltName:
           Full=tRNA-specific adenosine-34 deaminase subunit ADAT2
 gi|38328211|gb|AAH62195.1| Adenosine deaminase, tRNA-specific 2, TAD2 homolog (S. cerevisiae)
           [Mus musculus]
 gi|148671551|gb|EDL03498.1| deaminase domain containing 1 [Mus musculus]
          Length = 191

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 27/128 (21%)

Query: 8   ARFMSAALRFSRWHVGLTSTN--PSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
            ++M  A+R ++  +     N    V CL+V +  V+G+G            HAE+ A++
Sbjct: 23  EKWMEEAMRMAKEAL----ENIEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAID 78

Query: 62  EAGEEA-----------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           +  +                  YVT+EPC        CA  +    I  VV    +    
Sbjct: 79  QVLDWCHQHGQSPSTVFEHTVLYVTVEPCIM------CAAALRLMKIPLVVYGCQNERFG 132

Query: 111 VSGRGLQW 118
             G  L  
Sbjct: 133 GCGSVLNI 140


>gi|291526381|emb|CBK91968.1| Deoxycytidylate deaminase [Eubacterium rectale DSM 17629]
 gi|291526826|emb|CBK92412.1| Deoxycytidylate deaminase [Eubacterium rectale M104/1]
          Length = 161

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 59/157 (37%), Gaps = 32/157 (20%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-------------TAYG 50
           S+D  FM  A+      +     N  V   IV  +  ++  G               A  
Sbjct: 12  SWDEYFMGIAM---LSGMRSKDPNTQVGACIVDPEHKILSMGYNGFPLGCSDDEFTWARE 68

Query: 51  GC-------PHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           G         H+E+ A+    G    GAT YVTL PC+       CA+ II+ GIR VV 
Sbjct: 69  GEDNKYFYSTHSELNAILNYRGGSLEGATIYVTLFPCNE------CAKAIIQSGIREVVY 122

Query: 103 CVDDPD-VRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138
             D  +         + L   G+ + R   ++ ++ L
Sbjct: 123 DCDKYEGTASVTASKRMLKAAGVTIRRYEHTDREVTL 159


>gi|153010358|ref|YP_001371572.1| CMP/dCMP deaminase zinc-binding [Ochrobactrum anthropi ATCC 49188]
 gi|151562246|gb|ABS15743.1| CMP/dCMP deaminase zinc-binding [Ochrobactrum anthropi ATCC 49188]
          Length = 173

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/107 (32%), Positives = 42/107 (39%), Gaps = 17/107 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG-- 64
           M  AL  +R   G     P +  +IV  G +I R             HAEV A+ EAG  
Sbjct: 32  MEIALAEAR-AAGSRGEVP-IGAVIVHQGTIIARAGNRTREFNDVTAHAEVLAIREAGKA 89

Query: 65  ---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
              E       YVTLEPC+       CA  I    IRR+     DP 
Sbjct: 90  LQSERLVDCDLYVTLEPCAM------CATAISFARIRRLYYGASDPK 130


>gi|291005515|ref|ZP_06563488.1| guanine deaminase [Saccharopolyspora erythraea NRRL 2338]
          Length = 160

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 17/102 (16%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           +M+ A+  +   V           ++VKDG ++  G            HAEV A+  A +
Sbjct: 11  WMARAIELATRSVADGGG--PFGAVVVKDGEIVATGHNQVTTNLDPTAHAEVVAIRNACQ 68

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                +  G     + EPC      P C    +   +  VV 
Sbjct: 69  ALGTFKLDGCVLVTSCEPC------PMCMASALWARMESVVY 104


>gi|257470169|ref|ZP_05634261.1| deoxycytidylate deaminase [Fusobacterium ulcerans ATCC 49185]
 gi|317064387|ref|ZP_07928872.1| deoxycytidylate deaminase [Fusobacterium ulcerans ATCC 49185]
 gi|313690063|gb|EFS26898.1| deoxycytidylate deaminase [Fusobacterium ulcerans ATCC 49185]
          Length = 163

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 50/146 (34%), Gaps = 33/146 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGV-------------TAYG 50
            +D  FM  AL  ++        N  V   IV +   +IG G                  
Sbjct: 8   EWDEYFMGVALLSAKRSK---DPNTQVGACIVNEERRIIGVGYNGLPKGCSDDEFPWERE 64

Query: 51  GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           G           HAE+ A+  + +  +  T YV L PC        C++ II+ GI+ +V
Sbjct: 65  GEFLDTKYPFVCHAELNAILNSTKTLKNCTLYVALFPCHE------CSKAIIQSGIKELV 118

Query: 102 VCVDDPD-VRVSGRGLQWLSQKGIIV 126
              D     +      + L   G+  
Sbjct: 119 YLSDKYCGTKSDMASKRMLDAAGVKY 144


>gi|226325555|ref|ZP_03801073.1| hypothetical protein COPCOM_03360 [Coprococcus comes ATCC 27758]
 gi|225206038|gb|EEG88392.1| hypothetical protein COPCOM_03360 [Coprococcus comes ATCC 27758]
          Length = 162

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 52/152 (34%), Gaps = 35/152 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
           S+D  FM  A+   R        N  V C IV  D  ++  G                  
Sbjct: 10  SWDEYFMGVAILSGRRSK---DPNTQVGCCIVSADNKILSMGYNGLPRGCSDDEFPWERE 66

Query: 47  ------TAYGGCPHAEVQALEE-AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    H+E+ A+   +G    GA  YV+L PC+       CA+ II+ GI+ 
Sbjct: 67  GEDPLKTKYVYTVHSELNAILNYSGGSLEGAKLYVSLFPCNE------CAKAIIQSGIKE 120

Query: 100 VVVCVDDP-DVRVSGRGLQWLSQKGIIVDRMM 130
           V+   D   D              G+   +  
Sbjct: 121 VIYDSDKYADTTSVKASKMMFDCAGVRYHQYH 152


>gi|150004479|ref|YP_001299223.1| cytidine/deoxycytidylate deaminase [Bacteroides vulgatus ATCC 8482]
 gi|254882789|ref|ZP_05255499.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 4_3_47FAA]
 gi|294778238|ref|ZP_06743664.1| guanine deaminase [Bacteroides vulgatus PC510]
 gi|319643895|ref|ZP_07998478.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 3_1_40A]
 gi|149932903|gb|ABR39601.1| cytidine/deoxycytidylate deaminase [Bacteroides vulgatus ATCC 8482]
 gi|254835582|gb|EET15891.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 4_3_47FAA]
 gi|294447866|gb|EFG16440.1| guanine deaminase [Bacteroides vulgatus PC510]
 gi|317384512|gb|EFV65478.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 3_1_40A]
          Length = 155

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 37/113 (32%), Gaps = 17/113 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
              M  A+  S  +V           +I KDG +I  G            HAEV A+  A
Sbjct: 4   EELMRKAIELSIENVANGGG--PFGAVIAKDGEIIATGANRVTSQCDPTAHAEVSAIRAA 61

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
             +       G   Y + EPC      P C   I    + ++    +  D + 
Sbjct: 62  ASKLGTFNLSGCEIYTSCEPC------PMCLGAIYWARLDKMYYANNKTDAKN 108


>gi|255994428|ref|ZP_05427563.1| cytidine/deoxycytidylate deaminase family protein [Eubacterium
           saphenum ATCC 49989]
 gi|255993141|gb|EEU03230.1| cytidine/deoxycytidylate deaminase family protein [Eubacterium
           saphenum ATCC 49989]
          Length = 155

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 58/159 (36%), Gaps = 44/159 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D  FM  A   +      T    SV  +IVK+  ++  G                   
Sbjct: 9   SWDEYFMRFA-ELA--ATRTTCLRRSVGAVIVKNKHILATGYNGAPKKVPHCKDLGGCLR 65

Query: 47  ----------TAYGGCPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFII 93
                            HAE  A+     +G+   GAT Y+T +PC        C++ II
Sbjct: 66  EKLNVPSGERHELCRALHAEQNAIIQCAMSGQNIEGATIYITHQPCII------CSKMII 119

Query: 94  ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
             GI+R+VV    PD        Q LS+ G+ +  + E 
Sbjct: 120 NAGIKRIVVREGYPD----NLAKQILSEAGLSIIMLGEE 154


>gi|188583970|ref|YP_001927415.1| bifunctional deaminase-reductase domain protein [Methylobacterium
           populi BJ001]
 gi|179347468|gb|ACB82880.1| bifunctional deaminase-reductase domain protein [Methylobacterium
           populi BJ001]
          Length = 238

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 77/216 (35%), Gaps = 26/216 (12%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ--VHLLRAQSDAILVGIGTVL--AD 203
           +R ++   +  S D  I +        T     +   VH  R   DA + G  T+   AD
Sbjct: 6   ERPYVLCHMTTSVDGRIKVR----RWTTIDADSHYEAVHK-RLGGDAWMCGRITMQGYAD 60

Query: 204 DPELTCRLNGLQEHS----------PMRII-LDPHFKLSLDSKIIKTALLAPVIIVTE-- 250
             E        +  S          P   + LD    +   ++         VI++T   
Sbjct: 61  SAEPLTSAPAEEPVSREDHVARTDAPGYAVALDARGAMDWGAR--NDIEGDHVIVLTTGQ 118

Query: 251 -NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLV 308
            +DD +  L    ++  I      D    L  L    G+  LLVEGG  +  S + + LV
Sbjct: 119 ASDDRLRRLKAGGQSYIIAGERAVDFALALAKLKRLFGIERLLVEGGGRINGSMLKAGLV 178

Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           D + L  +  V G  G P+  +    E + M  RR 
Sbjct: 179 DELSLLLAPAVDGVIGTPALFDFEGGEADSMGSRRR 214


>gi|49081718|gb|AAT50259.1| PA3469 [synthetic construct]
          Length = 181

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 3/97 (3%)

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
           VL    R+  +  +       ++ L  L  +G   + + GG ++A S + + L+D +I+ 
Sbjct: 74  VLTRNPRESAVEGVELRHDTPQEGLARLGEQGCRRVWLAGGGSLAGSCLAAGLLDEVIVS 133

Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
               ++G G    PL  G  E+    + +  + S + 
Sbjct: 134 VIPQLLGAG---IPLFAGGRERRLQLLEQHGYNSGIV 167


>gi|237708779|ref|ZP_04539260.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 9_1_42FAA]
 gi|265755955|ref|ZP_06090422.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 3_1_33FAA]
 gi|229457205|gb|EEO62926.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 9_1_42FAA]
 gi|263234033|gb|EEZ19634.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 3_1_33FAA]
          Length = 155

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 38/113 (33%), Gaps = 17/113 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
              M  A+  S  +V           +I KDG +I  GV           HAEV A+  A
Sbjct: 4   EELMRKAIELSIENVANGGG--PFGAVIAKDGEIIATGVNRVTSQCDPTAHAEVSAIRAA 61

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
             +       G   Y + EPC      P C   I    + ++    +  D + 
Sbjct: 62  ATKLGTFNLSGCEIYTSCEPC------PMCLGAIYWARLDKMYYANNKTDAKN 108


>gi|212693618|ref|ZP_03301746.1| hypothetical protein BACDOR_03136 [Bacteroides dorei DSM 17855]
 gi|237724217|ref|ZP_04554698.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. D4]
 gi|212663871|gb|EEB24445.1| hypothetical protein BACDOR_03136 [Bacteroides dorei DSM 17855]
 gi|229437405|gb|EEO47482.1| cytidine/deoxycytidylate deaminase [Bacteroides dorei 5_1_36/D4]
          Length = 187

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 38/113 (33%), Gaps = 17/113 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
              M  A+  S  +V           +I KDG +I  GV           HAEV A+  A
Sbjct: 36  EELMRKAIELSIENVANGGG--PFGAVIAKDGEIIATGVNRVTSQCDPTAHAEVSAIRAA 93

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
             +       G   Y + EPC      P C   I    + ++    +  D + 
Sbjct: 94  ATKLGTFNLSGCEIYTSCEPC------PMCLGAIYWARLDKMYYANNKTDAKN 140


>gi|116750214|ref|YP_846901.1| zinc-binding CMP/dCMP deaminase [Syntrophobacter fumaroxidans MPOB]
 gi|116699278|gb|ABK18466.1| tRNA-adenosine deaminase [Syntrophobacter fumaroxidans MPOB]
          Length = 158

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 57/156 (36%), Gaps = 24/156 (15%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----CPHAE 56
           P++  D  FM  AL  +      +     V  ++    G V+ RG            HAE
Sbjct: 3   PLTDHD-YFMGIALEEALAGREESE--VPVGAVLAGPGGEVLARGHNRPIALCDPTAHAE 59

Query: 57  VQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +  L EA   A      G+  YVTLEPC+       C   +++  +R +V    DP    
Sbjct: 60  ILVLREAAAAAGNYRLPGSVLYVTLEPCAM------CVGALLQARVRTLVFGAPDPKSGA 113

Query: 112 SGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
           +G  +        +    ++  +  +E    L  + 
Sbjct: 114 AGSVVDLTKVDAFNHYVEVIGGIRMAECSELLKKFF 149


>gi|313886183|ref|ZP_07819913.1| dCMP deaminase [Porphyromonas asaccharolytica PR426713P-I]
 gi|332299700|ref|YP_004441621.1| CMP/dCMP deaminase zinc-binding protein [Porphyromonas
           asaccharolytica DSM 20707]
 gi|312924362|gb|EFR35141.1| dCMP deaminase [Porphyromonas asaccharolytica PR426713P-I]
 gi|332176763|gb|AEE12453.1| CMP/dCMP deaminase zinc-binding protein [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 161

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 53/151 (35%), Gaps = 32/151 (21%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA------------- 48
             +  D R++  A  ++            V  LIV + ++I  G                
Sbjct: 14  KQTILDRRYLRMARIWAENSYCRRR---QVGALIVHNQMIISDGYNGTPSGFENVCEDDE 70

Query: 49  ---YGGCPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  A+     +G    GAT Y+T  PC        CA+ II+  IRRVV 
Sbjct: 71  GITKPYVLHAEANAITKVAASGNNCTGATIYITASPCLE------CAKLIIQSRIRRVVY 124

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
                       G++ L + GI V  +   E
Sbjct: 125 GEQYRLT----DGVELLERAGIEVVYIPLDE 151


>gi|205374270|ref|ZP_03227069.1| hypothetical protein Bcoam_14139 [Bacillus coahuilensis m4-4]
          Length = 186

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 59/155 (38%), Gaps = 34/155 (21%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------ 53
           M   S+D  FM+ +   +      T T  +V   IV++  VI  G      G        
Sbjct: 1   MNRISWDQYFMAQSHLLALRS---TCTRLAVGATIVREKRVIAGGYNGSIAGGDHCIDNG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAEV A+ +    G    GA  YVT  PC        C + II+ GI+
Sbjct: 58  CYVIENHCVRTIHAEVNAILQCAKFGVPTEGAELYVTHFPCLQ------CCKTIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
           +V    +  +   +   ++  ++ GI + ++   E
Sbjct: 112 KVYFAENYKNHPYA---VELFAKAGIEIKQVKLEE 143


>gi|291548625|emb|CBL24887.1| Deoxycytidylate deaminase [Ruminococcus torques L2-14]
          Length = 162

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 54/152 (35%), Gaps = 35/152 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
           S+D  FM  A+      +     N  V C IV +D  ++  G                  
Sbjct: 10  SWDEYFMGVAM---LSGMRSKDPNTQVGCCIVSQDNKILSMGYNGLPMGCSDDEFPWARE 66

Query: 47  ------TAYGGCPHAEVQALEE-AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    H+E+ A+    G    GA  YV+L PC+       CA+ II+ GI+ 
Sbjct: 67  GEDPLETKYVYTTHSELNAILNYNGGSLAGAKLYVSLFPCNE------CAKAIIQAGIKE 120

Query: 100 VVVCVDDP-DVRVSGRGLQWLSQKGIIVDRMM 130
           V+   D   D        + +   G+   +  
Sbjct: 121 VIYDCDKYADTAGVKASKRMMDAAGVRYHQYH 152


>gi|282856349|ref|ZP_06265628.1| cytidine and deoxycytidylate deaminase family protein
           [Pyramidobacter piscolens W5455]
 gi|282585720|gb|EFB91009.1| cytidine and deoxycytidylate deaminase family protein
           [Pyramidobacter piscolens W5455]
          Length = 166

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 58/168 (34%), Gaps = 29/168 (17%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT--------AYGGCPH 54
           + + D  +M+ AL            +  V  L+V      G  +          +    H
Sbjct: 1   MLTSDQEYMNLALELGLQAA--REGDIPVGALVVDPC---GEIIGRGRNRRRIEHDPTAH 55

Query: 55  AEVQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AEV AL EA          G + YVTLEPC      P CA  +++  + R+V    DP  
Sbjct: 56  AEVVALREAARNLGVWNLNGCSLYVTLEPC------PMCAGALVQARVSRLVYGCTDPKA 109

Query: 110 RVSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHI 152
              G          +     +V  +ME E +  L  +     EK    
Sbjct: 110 GACGTLYDLTRDTRLFHRLQVVPGVMEQECRALLQDFFRECREKNRSF 157


>gi|311746929|ref|ZP_07720714.1| cytidine/deoxycytidylate deaminase family protein [Algoriphagus sp.
           PR1]
 gi|126578621|gb|EAZ82785.1| cytidine/deoxycytidylate deaminase family protein [Algoriphagus sp.
           PR1]
          Length = 160

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 55/161 (34%), Gaps = 38/161 (23%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M    FD  FM  A+  ++    +      V  ++ K+  +I  G               
Sbjct: 1   MEKPDFDDIFMELAVNLAKRSHCIKK---HVGAVLTKETRIISIGYNGPPAGTHNCDDEF 57

Query: 54  -----------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFII 93
                            HAE  A+  A        G+T YVTL PC        CA+ I 
Sbjct: 58  PENGCARDSKGSCSLALHAEQNAILYAVKNNTSVEGSTLYVTLAPCL------ACARIIF 111

Query: 94  ECGIRRVVV--CVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
             GI +VV      +     +  G+ +L + GI VDR  + 
Sbjct: 112 SMGISKVVYLFSYAEYKGIGTDEGVDFLRKFGIKVDRYTKE 152


>gi|240103131|ref|YP_002959440.1| Deoxycytidylate deaminase (dCMP deaminase) [Thermococcus
           gammatolerans EJ3]
 gi|239910685|gb|ACS33576.1| Deoxycytidylate deaminase (dCMP deaminase) [Thermococcus
           gammatolerans EJ3]
          Length = 177

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 49/146 (33%), Gaps = 32/146 (21%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
           D  FM  A   S      T     V  + VKDG ++  G                     
Sbjct: 23  DEYFMLIAKLVSLRA---TCPRLRVGAVAVKDGYILATGYNGAPRGMDHCIDVGCLIVDG 79

Query: 54  ------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                 HAE   +  A   G    GAT YVT  PC        C + +I  GI+ +V   
Sbjct: 80  HCHRAVHAEQNVIAMAARKGISLEGATLYVTHFPCD------TCFKLVINAGIKEIVYEE 133

Query: 105 DDPDVRVSGRGLQWLSQKGIIVDRMM 130
             P+   +   L+   +KGI+  R  
Sbjct: 134 MYPN-EATEILLKEAQEKGIVKIRQF 158


>gi|320335249|ref|YP_004171960.1| Guanine deaminase [Deinococcus maricopensis DSM 21211]
 gi|319756538|gb|ADV68295.1| Guanine deaminase [Deinococcus maricopensis DSM 21211]
          Length = 155

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 39/109 (35%), Gaps = 16/109 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE 65
            M  A R +  +V      P    +IVKDG +I RG      +     HAEV A+  A  
Sbjct: 5   HMQEAARLALENVTSGHGGP-FGAVIVKDGEIIARGANNVTASNDPTAHAEVTAIRAAAA 63

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
                +      Y + EPC      P C   I    ++RV       D 
Sbjct: 64  KLGRFDLSDCEIYTSCEPC------PMCLGAIYWARLQRVHYGCTQADA 106


>gi|269126069|ref|YP_003299439.1| CMP/dCMP deaminase zinc-binding protein [Thermomonospora curvata
           DSM 43183]
 gi|268311027|gb|ACY97401.1| CMP/dCMP deaminase zinc-binding protein [Thermomonospora curvata
           DSM 43183]
          Length = 151

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/132 (34%), Positives = 59/132 (44%), Gaps = 9/132 (6%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT-AYGGCPHAEVQALEEA 63
            D  ++  A   +R     + T  SV  +IV  DG  + RG +       HAE +AL + 
Sbjct: 5   QDRHWLEVACDLARR-CPPSQTAFSVGAVIVGADGTELARGFSRETDPKAHAEEEALAKL 63

Query: 64  GEEARGA-----TAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
                 A     T Y +LEPC      P PCA+ I E GI RVV    +P + V G G Q
Sbjct: 64  RAAGAAADLGGATIYSSLEPCGRRLSRPRPCARLIAEAGIGRVVYAWREPVLFVEGGGEQ 123

Query: 118 WLSQKGIIVDRM 129
            L   GI V R+
Sbjct: 124 VLRAAGIEVVRI 135


>gi|39935973|ref|NP_948249.1| cytidine/deoxycytidylate deaminase [Rhodopseudomonas palustris
           CGA009]
 gi|39649827|emb|CAE28349.1| Cytidine/deoxycytidylate deaminase:Tat pathway signal
           [Rhodopseudomonas palustris CGA009]
          Length = 214

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 9/97 (9%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
           +  D R+M+ A+   R    +  T  +   +IV+DG V+     +         HAEV A
Sbjct: 58  TEQDRRYMTQAIELMRKAGVVEKTGGAFGAVIVRDGEVLSATGNSVLRDNDPSAHAEVNA 117

Query: 60  LEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQF 91
           +  A ++      RGAT Y + E C     +   A+ 
Sbjct: 118 IRAACKKVGAPNLRGATMYTSCECCPMCYATAYWARL 154


>gi|297193429|ref|ZP_06910827.1| deaminase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297151779|gb|EDY67096.2| deaminase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 176

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 52/147 (35%), Gaps = 23/147 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGC----PHAEVQALEEAGE 65
           M  AL  +         +  V  +++  +G ++  G            HAEV A+  A  
Sbjct: 31  MRLALGEADRAAQ--GGDVPVGAVVLSGEGTILAVGHNEREATGDPTAHAEVLAIRRAAA 88

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ--- 117
                   G T  VTLEPC        CA  +++  + RVV    D     +G       
Sbjct: 89  VLGEWRLTGCTLVVTLEPC------TMCAGALVQSRVARVVYGARDDKAGAAGSLWDVVR 142

Query: 118 --WLSQKGIIVDRMMESEGKIFLHAYL 142
              L+ +  +V  ++  E    L A+ 
Sbjct: 143 DRRLNHRPEVVSGVLGEECSKQLTAFF 169


>gi|123495816|ref|XP_001326830.1| RibD C-terminal domain containing protein [Trichomonas vaginalis
           G3]
 gi|121909750|gb|EAY14607.1| RibD C-terminal domain containing protein [Trichomonas vaginalis
           G3]
          Length = 239

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 78/237 (32%), Gaps = 24/237 (10%)

Query: 145 QVEKRSHITLKIAVSQDNMIG---MAGCGSVPITGFISK-NQVHLL------RAQSDAIL 194
              +R ++ + +  S D  I            +     K    H        RA  D+I 
Sbjct: 1   MSNERPYVFIHVIPSIDGKITGNVFKTESMEKLGSEYWKTKFNHEHDAWLCGRATFDSIC 60

Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMRII---LDPHFKLSLDSKIIKT-ALLAPVI-IVT 249
               T+     + TC          ++++   +DP  KL     +       + +I ++T
Sbjct: 61  THNETIDLKGMKETCEEGDFVAKRNLKMVAIAVDPKGKLGWKENVAHYWGQDSDIIEVLT 120

Query: 250 ENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVG-RGVTSLLVEGGAAVAHSFINSR 306
                      R K I+ I C   D   K +LT L     + ++ V+GG  +  S + + 
Sbjct: 121 NQSTAQYRNYLRSKGISYIICGDHDVDWKLMLTKLKNIFHIKAICVQGGGMINWSLLRAG 180

Query: 307 LVDSIILYRSQIVIGEGGIPS-----PLEEGYLEKNFMCVRRDYFGSD-VCLEYIGK 357
           LVD +    +    G     S     P +       F  +     G + V L Y  K
Sbjct: 181 LVDELSYVMAPTTDGRSTDVSFIRRNPEDTDSPPLEFDLIDVQRIGENGVWLRYAPK 237


>gi|240141090|ref|YP_002965570.1| putative deaminase reductase domain-containing protein
           [Methylobacterium extorquens AM1]
 gi|240011067|gb|ACS42293.1| putative deaminase reductase domain-containing protein
           [Methylobacterium extorquens AM1]
          Length = 238

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTE---NDDPVLALAFRKKNINIIYCDCRDLKKL 278
           + LD    +   ++         VI++T    +DD +  L    ++  I      D    
Sbjct: 90  VALDARGAMDWGAR--NDIEGDHVIVLTTGQASDDRLRRLKAGGQSYIIAGEREVDFALA 147

Query: 279 LTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
           L  L    G+  LLVEGG  +  S + + LVD + L  +  V G  G P+  +    E +
Sbjct: 148 LAKLKRLFGIERLLVEGGGRINGSMLKAGLVDELSLLIAPAVDGVLGTPALFDFEGGEGD 207

Query: 338 FMCVRRD 344
            M  RR 
Sbjct: 208 SMGSRRR 214


>gi|66806365|ref|XP_636905.1| adenosine deaminase, tRNA-specific [Dictyostelium discoideum AX4]
 gi|60465302|gb|EAL63394.1| adenosine deaminase, tRNA-specific [Dictyostelium discoideum AX4]
          Length = 254

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 47/129 (36%), Gaps = 23/129 (17%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
           S   +FM AA+        L      VAC+IV  G +I RG         G  HAE++A 
Sbjct: 45  SNHKKFMEAAIEEGYKA--LKEGEVPVACVIVYKGEIIARGSNKTNIKKNGTRHAELEAF 102

Query: 61  EE-----------AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           ++                     YVT+EPC        C+  +  C I+RV     +   
Sbjct: 103 DQIFLNKELNDRFKDSLLEECDLYVTVEPCLM------CSVALQFCKIKRVFFGCHNDKF 156

Query: 110 RVSGRGLQW 118
             +G   + 
Sbjct: 157 GGNGSVYEL 165


>gi|301066190|ref|YP_003788213.1| cytosine/adenosine deaminase [Lactobacillus casei str. Zhang]
 gi|300438597|gb|ADK18363.1| Cytosine/adenosine deaminase [Lactobacillus casei str. Zhang]
          Length = 155

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 52/143 (36%), Gaps = 19/143 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
             FM+ A   ++ +V  +   P   C+I+KDG V+ R        +    H E+ A+ +A
Sbjct: 4   KEFMAMANEEAKANVNGSDGGP-FGCVIIKDGKVVSRAHNQVLVDHDPTAHGEITAIRKA 62

Query: 64  G-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV---RVSGRG 115
           G      +  G   Y +  PC      P C   II   I++V       D          
Sbjct: 63  GQALGTHDLTGCELYTSAMPC------PMCLSAIIWANIKQVYYGNTADDAAAIGFRDAA 116

Query: 116 LQWLSQKGIIVDRMMESEGKIFL 138
           +      G+  D +  ++    L
Sbjct: 117 IYDFINAGLKGDMLALNQHDREL 139


>gi|311741106|ref|ZP_07714931.1| cytidine and deoxycytidylate deaminase [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303908|gb|EFQ79986.1| cytidine and deoxycytidylate deaminase [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 143

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 48/148 (32%), Gaps = 25/148 (16%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEA-- 63
           M  AL  ++           V  ++    G  +  GV           HAEV+A+ +A  
Sbjct: 1   MRRALDVAKRAPAGDVP---VGAVLYDAAGTELATGVNRREELADPTAHAEVEAIRQAVR 57

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
               G    G    VTLEPC+       CA  +    +  VV    +P     G  +  L
Sbjct: 58  VHGDGWRLSGCELVVTLEPCAM------CAGALQAARVSSVVFGAFEPKTGACGSLIDVL 111

Query: 120 SQKGI-----IVDRMMESEGKIFLHAYL 142
                     +   ++E E    L  + 
Sbjct: 112 RAPTAPFTPQVRGGVLEGECAGLLRNFF 139


>gi|115522956|ref|YP_779867.1| CMP/dCMP deaminase, zinc-binding [Rhodopseudomonas palustris
           BisA53]
 gi|115516903|gb|ABJ04887.1| tRNA-adenosine deaminase [Rhodopseudomonas palustris BisA53]
          Length = 148

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 15/101 (14%)

Query: 30  SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            + C+IV+DG VI               HAE+ A+ +A      E       YVTLEPC 
Sbjct: 24  PIGCVIVRDGEVIATAHNRTLSDRDPTAHAEILAIRQAAASLGSERLVDCDLYVTLEPC- 82

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                  CA  I    IRR+     DP       G ++ +Q
Sbjct: 83  -----TMCAGAISLARIRRLYYGASDPKGGAVESGARFFAQ 118


>gi|66358600|ref|XP_626478.1| dCMP deaminase, Dcd1p like [Cryptosporidium parvum Iowa II]
 gi|46227806|gb|EAK88726.1| dCMP deaminase, Dcd1p like [Cryptosporidium parvum Iowa II]
          Length = 373

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 59/160 (36%), Gaps = 39/160 (24%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
           ++D  FM  A + +       S    V  +IVKD  +I  G                   
Sbjct: 223 NWDEYFMKIA-KLASQRSNCVSR--KVGSVIVKDKKIISTGYNGTPKNMKNCFEGGCTRC 279

Query: 48  -----------AYGGCPHAEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                          C HAE  AL  AG ++  GAT YVTL PC        C + II+C
Sbjct: 280 SNPNRVEGKSLETCSCMHAETNALLFAGIDKCIGATIYVTLMPCI------SCTKNIIQC 333

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135
            I RVV   +          ++ L    + VDR++E +  
Sbjct: 334 EIERVVFTTEYAIPDE-ISTIKLLRDSNVKVDRLVEKQSC 372


>gi|317503536|ref|ZP_07961560.1| cytidine/deoxycytidylate deaminase [Prevotella salivae DSM 15606]
 gi|315665348|gb|EFV04991.1| cytidine/deoxycytidylate deaminase [Prevotella salivae DSM 15606]
          Length = 150

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 56/150 (37%), Gaps = 38/150 (25%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           + D R++  A  ++     L      V  L+VKD ++I  G     G P           
Sbjct: 9   NLDNRYLRMARIWAENSYCLRR---QVGALVVKDKMIISDGY---NGTPSGFDNVCEDNE 62

Query: 54  --------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  A   L  +   + G+T YVT  PC        CA+ II+ GI+RVV 
Sbjct: 63  GVTYPYVLHAEANAITKLARSNNNSDGSTLYVTASPCIE------CAKLIIQAGIKRVVY 116

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
                       G+  L + G  V  M + 
Sbjct: 117 AEKYRL----EDGIDLLRKAGTEVIYMEQK 142


>gi|304393183|ref|ZP_07375111.1| tRNA-specific adenosine deaminase [Ahrensia sp. R2A130]
 gi|303294190|gb|EFL88562.1| tRNA-specific adenosine deaminase [Ahrensia sp. R2A130]
          Length = 153

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 59/157 (37%), Gaps = 23/157 (14%)

Query: 1   MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHA 55
           M   ++D A FM  AL  +R           V  ++V+DG V+ +        +    HA
Sbjct: 1   MTKDNYDVASFMEQALVEARAAAER--GEVPVGAVLVRDGEVVAKAGNRTLELHDPSAHA 58

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+  + +A   A+         YVTLEPC        CA  I    IRRV    DD    
Sbjct: 59  ELLVIRQACAAAKSQRLPDCDLYVTLEPC------TLCATAISFARIRRVYFAADDAKGG 112

Query: 111 VSGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
               G+++        +  +   M E E    L ++ 
Sbjct: 113 AVTNGVRFFDQPTCHHEPEVYSGMCEVEAGELLRSFF 149


>gi|299138415|ref|ZP_07031594.1| CMP/dCMP deaminase zinc-binding [Acidobacterium sp. MP5ACTX8]
 gi|298599661|gb|EFI55820.1| CMP/dCMP deaminase zinc-binding [Acidobacterium sp. MP5ACTX8]
          Length = 182

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 55/157 (35%), Gaps = 27/157 (17%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQA 59
             D  FM   L  +       +    V  +IV   G ++ RG            HAE+ A
Sbjct: 7   PDDEAFMR--LAIAEARAAEAAGEVPVGAIIVSPTGEIVSRGNNQVLRTNDPTAHAEIVA 64

Query: 60  LEEAGEEAR---------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           L  AG             G T Y TLEPC+       CA  I+   I R+V    DP   
Sbjct: 65  LRAAGLALDNYRLLTPEGGCTLYCTLEPCAM------CAGAILHARIARLVFAARDPKAG 118

Query: 111 VSGRGL-----QWLSQKGIIVDRMMESEGKIFLHAYL 142
             G  L       L+ +  +V+ ++  E    L  + 
Sbjct: 119 ACGSVLSVMNHPALNHRVEVVESILTEECSAMLTNFF 155


>gi|302345385|ref|YP_003813738.1| dCMP deaminase family protein [Prevotella melaninogenica ATCC
           25845]
 gi|302149570|gb|ADK95832.1| dCMP deaminase family protein [Prevotella melaninogenica ATCC
           25845]
          Length = 166

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 56/144 (38%), Gaps = 32/144 (22%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--------------- 48
           ++ D R++  A  ++            V  L+VKD ++I  G                  
Sbjct: 22  AAVDYRYLRMARIWAENSYCKRR---QVGALVVKDKMIISDGYNGTPSGFENICEDESGV 78

Query: 49  -YGGCPHAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                 HAE  A   L  +G  + G+T YVT  PC        CA+ II+ GIRRVV   
Sbjct: 79  TKPYVLHAEANAITKLARSGNNSEGSTLYVTASPCIE------CAKLIIQAGIRRVVYAE 132

Query: 105 DDPDVRVSGRGLQWLSQKGIIVDR 128
                     G+  L++ G+ V+ 
Sbjct: 133 KYRLT----DGIDLLTRAGVEVEY 152


>gi|153006601|ref|YP_001380926.1| CMP/dCMP deaminase [Anaeromyxobacter sp. Fw109-5]
 gi|152030174|gb|ABS27942.1| CMP/dCMP deaminase zinc-binding [Anaeromyxobacter sp. Fw109-5]
          Length = 150

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 47/117 (40%), Gaps = 17/117 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA--- 63
           M  AL  +R           V  + V +G V+GRG  A         HAE+ A+++A   
Sbjct: 1   MQEALALARGAAER--GEVPVGAVAVFEGRVVGRGANAREAAHDPTAHAELLAIQDAARA 58

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                  G T YVTLEPC+       CA  ++   I R+V    DP     G  +  
Sbjct: 59  LGRWRLTGVTVYVTLEPCAM------CAGAMVLARIDRLVYAASDPKAGAVGSLVDL 109


>gi|299141063|ref|ZP_07034201.1| cytidine/deoxycytidylate deaminase family protein [Prevotella oris
           C735]
 gi|298578029|gb|EFI49897.1| cytidine/deoxycytidylate deaminase family protein [Prevotella oris
           C735]
          Length = 150

 Score = 66.1 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 56/149 (37%), Gaps = 38/149 (25%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
            D R++  A  ++     L      V  L+VKD ++I  G     G P            
Sbjct: 10  LDNRYLRMARIWAENSYCLRR---QVGALVVKDKMIISDGY---NGTPSGFDNVCEDANQ 63

Query: 54  -------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A   L  +   + G+T YVT  PC        CA+ II+ GIRRVV  
Sbjct: 64  ATFPYVLHAEANAITKLARSSNNSDGSTLYVTASPCIE------CAKLIIQAGIRRVVYA 117

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
                      G+  L + GI V  M + 
Sbjct: 118 EKYRL----EDGIHLLRKAGIEVIYMEQK 142


>gi|229815226|ref|ZP_04445562.1| hypothetical protein COLINT_02272 [Collinsella intestinalis DSM
           13280]
 gi|229809236|gb|EEP45002.1| hypothetical protein COLINT_02272 [Collinsella intestinalis DSM
           13280]
          Length = 156

 Score = 66.1 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 53/156 (33%), Gaps = 36/156 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG----------GCP 53
           S+D  FM AA+  S         N  V   I   +  ++  G               G  
Sbjct: 10  SWDEFFMRAAVAASLRSK---DPNTQVGACIADTNNRILSVGYNGTPSALNDDDFPWGTA 66

Query: 54  ------------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE  A+     + ++  GAT YVTL PC    ++      +++ G+ 
Sbjct: 67  DDPLHDKHNYVIHAEANAILNYRGSLKDMAGATVYVTLFPCHECAKT------LVQAGVG 120

Query: 99  RVVVCVD-DPDVRVSGRGLQWLSQKGIIVDRMMESE 133
            VV   D   D   +      L + GI   ++   +
Sbjct: 121 EVVYLDDKYCDTEDNLISKNILDRCGITYRQVQLED 156


>gi|157736310|ref|YP_001488993.1| dCMP deaminase, putative [Arcobacter butzleri RM4018]
 gi|315635442|ref|ZP_07890708.1| CMP/dCMP deaminase [Arcobacter butzleri JV22]
 gi|157698164|gb|ABV66324.1| dCMP deaminase, putative [Arcobacter butzleri RM4018]
 gi|315480200|gb|EFU70867.1| CMP/dCMP deaminase [Arcobacter butzleri JV22]
          Length = 147

 Score = 66.1 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 56/152 (36%), Gaps = 41/152 (26%)

Query: 7   DARFMSAA--LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           D  F++ A  +  +   V        V  +IVKDG ++  G                   
Sbjct: 4   DRSFINIAKEIALASKCVSK-----QVGAVIVKDGRILSTGYNGTPAGYINCSEHWKGEY 58

Query: 54  -------------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                        HAE+ A+      G    G T YVTLEPCS   ++      +I  GI
Sbjct: 59  TKDHHEWSKTYEIHAEMNAIIWAARKGISIEGGTIYVTLEPCSECSKN------LIASGI 112

Query: 98  RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           +R+V      +   S    ++L   G+ ++++
Sbjct: 113 KRIVY-EKAYEHTNSEIISKFLEDNGVKIEQI 143


>gi|116494635|ref|YP_806369.1| cytosine/adenosine deaminase [Lactobacillus casei ATCC 334]
 gi|227535386|ref|ZP_03965435.1| guanine deaminase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239631766|ref|ZP_04674797.1| cytosine/adenosine deaminase [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|116104785|gb|ABJ69927.1| Cytosine/adenosine deaminase [Lactobacillus casei ATCC 334]
 gi|227186982|gb|EEI67049.1| guanine deaminase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239526231|gb|EEQ65232.1| cytosine/adenosine deaminase [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 155

 Score = 66.1 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 52/143 (36%), Gaps = 19/143 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
             FM+ A   ++ +V  +   P   C+I+KDG V+ R        +    H E+ A+ +A
Sbjct: 4   KEFMAMANEEAKANVNGSDGGP-FGCVIIKDGKVVSRAHNQVLVDHDPTAHGEITAIRKA 62

Query: 64  G-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV---RVSGRG 115
           G      +  G   Y +  PC      P C   II   I++V       D          
Sbjct: 63  GQALGTHDLTGCELYTSAMPC------PMCLSAIIWANIKQVYYGNTADDAAAIGFRDAA 116

Query: 116 LQWLSQKGIIVDRMMESEGKIFL 138
           +      G+  D +  ++    L
Sbjct: 117 IYDFINAGLKGDMLALTQHDREL 139


>gi|167540179|ref|XP_001741595.1| tRNA-specific adenosine deaminase [Entamoeba dispar SAW760]
 gi|165893805|gb|EDR21932.1| tRNA-specific adenosine deaminase, putative [Entamoeba dispar
           SAW760]
          Length = 166

 Score = 66.1 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 16/124 (12%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTA----YGGCPHAEVQAL 60
            D  +M+ AL+  +  + +      V C+++   G ++ +G         G  HAE+  +
Sbjct: 3   DDKYYMNEALKMGQEALNI--GEVPVGCVVINSKGEIVAKGRNHTKEFQDGTQHAEIVCI 60

Query: 61  EEAGEE---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            +  E+         YVT EPC        CA+ + +CGI +++    +      G  + 
Sbjct: 61  NQLVEKHIRLNECILYVTCEPCIM------CAEALKQCGITKIIYGCSNARFGGCGSVMT 114

Query: 118 WLSQ 121
            +  
Sbjct: 115 VIKS 118


>gi|153816406|ref|ZP_01969074.1| hypothetical protein RUMTOR_02659 [Ruminococcus torques ATCC 27756]
 gi|317502465|ref|ZP_07960628.1| dCMP deaminase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089291|ref|ZP_08338193.1| hypothetical protein HMPREF1025_01776 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846241|gb|EDK23159.1| hypothetical protein RUMTOR_02659 [Ruminococcus torques ATCC 27756]
 gi|316896150|gb|EFV18258.1| dCMP deaminase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330405843|gb|EGG85372.1| hypothetical protein HMPREF1025_01776 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 187

 Score = 66.1 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 55/152 (36%), Gaps = 35/152 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
           ++D  FM  A+      +     N  V C IV +D  ++  G                  
Sbjct: 35  TWDEYFMGVAM---LSGMRSKDPNTQVGCCIVSQDNKILSMGYNGFPLGCSDDEFPWVRD 91

Query: 47  ------TAYGGCPHAEVQALEE-AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    H+E+ A+   +G    GA  YV+L PC+       CA+ II+ GI+ 
Sbjct: 92  GEDPLETKYVYSTHSELNAILNYSGGSLAGAKLYVSLFPCNE------CAKAIIQAGIKE 145

Query: 100 VVVCVDDP-DVRVSGRGLQWLSQKGIIVDRMM 130
           V+   D   D        + +   G+   +  
Sbjct: 146 VIYDCDKYADTPSVIASKRMMDAAGVRYHQYH 177


>gi|294501314|ref|YP_003565014.1| ComE operon protein [Bacillus megaterium QM B1551]
 gi|294351251|gb|ADE71580.1| ComE operon protein [Bacillus megaterium QM B1551]
          Length = 188

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 59/161 (36%), Gaps = 34/161 (21%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
           M   S+D  FM+ +   +      T    +V   +V+D  +I  G      GG       
Sbjct: 1   MNRISWDQYFMAQSHLLALRS---TCERLAVGATVVRDKRIIAGGYNGSISGGVHCADEG 57

Query: 52  ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAEV AL +    G +   A  YVT  PC +      C + +I+ GI+
Sbjct: 58  CYVIDGHCVRTVHAEVNALLQCAKFGVKTEDAEVYVTHFPCLN------CCKALIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
            V    D  +   +   ++   Q G+   ++   E  I L 
Sbjct: 112 TVYYANDYKNHPYA---VELFQQAGVRTAKVELDEAIIDLK 149


>gi|282162767|ref|YP_003355152.1| hypothetical protein MCP_0097 [Methanocella paludicola SANAE]
 gi|282155081|dbj|BAI60169.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 162

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 55/159 (34%), Gaps = 43/159 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           + D  FM  A   ++     T     V  +IVK G ++  G                   
Sbjct: 7   THDEYFMEIANVVAKRS---TCLRIHVGAVIVKGGQILSTGYNGAPHGFEHCLDIGCIRE 63

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G    GAT Y T +PC        C + II 
Sbjct: 64  KENVAHGTRHELCRAVHAEQNAIIQAAIHGVSIEGATVYCTHQPCI------LCTKMIIN 117

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
           C I RVV     PD       L++L Q GI V RM   E
Sbjct: 118 CKINRVVFQNGYPD----EMSLKFLKQAGIDVLRMPSKE 152


>gi|282877407|ref|ZP_06286230.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella buccalis ATCC 35310]
 gi|281300459|gb|EFA92805.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella buccalis ATCC 35310]
          Length = 146

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 53/147 (36%), Gaps = 38/147 (25%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
            D R++  A  ++            V  L+VK  ++I  G     G P            
Sbjct: 9   LDQRYLRMARIWAENSYCHRR---QVGALVVKGNMIISDGY---NGTPSGFDNVCEDENG 62

Query: 54  -------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A   L  +   + G+T YVT  PC        CA+ II+ GI+RVV  
Sbjct: 63  VTHPYVLHAEANAITKLARSSNNSDGSTLYVTASPCIE------CAKLIIQAGIKRVVYA 116

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMM 130
                      G+  L + GI V  + 
Sbjct: 117 EKYRL----EDGINLLKRAGIEVIYLN 139


>gi|313203297|ref|YP_004041954.1| cmp/dcmp deaminase zinc-binding protein [Paludibacter
           propionicigenes WB4]
 gi|312442613|gb|ADQ78969.1| CMP/dCMP deaminase zinc-binding protein [Paludibacter
           propionicigenes WB4]
          Length = 156

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 25/117 (21%)

Query: 8   ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQA 59
            +FM  A+  S        G        A +IVK+G +I  G            HAEV A
Sbjct: 5   KKFMRKAIALSLKNIENGGG------PFAAVIVKEGKIIATGANRVTANTDPTAHAEVNA 58

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + +A +     +  G   Y + EPC      P C   +    + ++       D + 
Sbjct: 59  IRKAAKKLGTFDLSGCEIYTSCEPC------PMCLGAVYWAHLDKMYYGNTKADAKN 109


>gi|212224519|ref|YP_002307755.1| deoxycytidylate deaminase [Thermococcus onnurineus NA1]
 gi|212009476|gb|ACJ16858.1| deoxycytidylate deaminase [Thermococcus onnurineus NA1]
          Length = 181

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 49/146 (33%), Gaps = 32/146 (21%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
           D  FM  A   S      T     V  + VKDG ++  G                     
Sbjct: 25  DEYFMLIAKLVSLRA---TCPRLRVGAVAVKDGYILATGYNGAPRGMEHCIDVGCLIVDG 81

Query: 54  ------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                 HAE   +  A   G    GAT YVT  PC        C + +I  GI+ +V   
Sbjct: 82  HCHRAVHAEQNVIAMAARKGISLEGATLYVTHFPCD------TCFKLVINAGIKEIVYEE 135

Query: 105 DDPDVRVSGRGLQWLSQKGIIVDRMM 130
             P+   +   L+   +KGI+  R  
Sbjct: 136 MYPN-EATEVLLREAQEKGIVKIRQF 160


>gi|191638132|ref|YP_001987298.1| Guanine deaminase [Lactobacillus casei BL23]
 gi|190712434|emb|CAQ66440.1| Guanine deaminase [Lactobacillus casei BL23]
 gi|327382160|gb|AEA53636.1| Cytidine/deoxycytidylate deaminase [Lactobacillus casei LC2W]
 gi|327385358|gb|AEA56832.1| Cytidine/deoxycytidylate deaminase [Lactobacillus casei BD-II]
          Length = 155

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 52/143 (36%), Gaps = 19/143 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
             FM+ A   ++ +V  +   P   C+I+KDG V+ R        +    H E+ A+ +A
Sbjct: 4   KEFMAMANEEAKANVNGSDGGP-FGCVIIKDGKVVSRAHNQVLVDHDPTAHGEITAIRKA 62

Query: 64  G-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV---RVSGRG 115
           G      +  G   Y +  PC      P C   II   I++V       D          
Sbjct: 63  GQALGTHDLTGCELYTSAMPC------PMCLSAIIWANIKQVYYGNTADDAAAIGFRDAA 116

Query: 116 LQWLSQKGIIVDRMMESEGKIFL 138
           +      G+  D +  ++    L
Sbjct: 117 IYDFINAGLKGDMLALTQHDREL 139


>gi|67481305|ref|XP_656002.1| cytidine/deoxycytidylate deaminase family protein [Entamoeba
           histolytica HM-1:IMSS]
 gi|56473174|gb|EAL50617.1| cytidine/deoxycytidylate deaminase family protein [Entamoeba
           histolytica HM-1:IMSS]
          Length = 166

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 16/124 (12%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTA----YGGCPHAEVQAL 60
            D  +M+ AL+  +  + +      V C+++   G ++ +G         G  HAE+  +
Sbjct: 3   DDKYYMNEALKMGQEALNI--GEVPVGCVVINSKGEIVAKGRNHTKEFQDGTQHAEIVCI 60

Query: 61  EEAGEE---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            +  E+         YVT EPC        CA+ + +CGI +++    +      G  + 
Sbjct: 61  NQLVEKHVHLSECILYVTCEPCIM------CAEALKQCGITKIIYGCSNARFGGCGSVMT 114

Query: 118 WLSQ 121
            +  
Sbjct: 115 VIKS 118


>gi|169234864|ref|NP_001108500.1| deaminase domain containing 1 [Rattus norvegicus]
 gi|165970946|gb|AAI58617.1| Deadc1 protein [Rattus norvegicus]
          Length = 191

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 27/128 (21%)

Query: 8   ARFMSAALRFSRWHVGLTSTN--PSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
            ++M  A+R ++  +     N    V CL+V +  V+G+G            HAE+ A++
Sbjct: 23  EKWMEEAMRMAKEAL----ENIEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAID 78

Query: 62  EAGEEA-----------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           +  +                  YVT+EPC        CA  +    I  VV    +    
Sbjct: 79  QVLDWCHRHGQSPSAVFEHTVLYVTVEPCIM------CAAALRLMKIPLVVYGCQNERFG 132

Query: 111 VSGRGLQW 118
             G  L  
Sbjct: 133 GCGSVLNI 140


>gi|328885914|emb|CCA59153.1| 5-amino-6-(5-phosphoribosylamino)uracilreductase [Streptomyces
           venezuelae ATCC 10712]
          Length = 268

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 60/194 (30%), Gaps = 30/194 (15%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
            +   +  S D   G     S P++          LRA +D ++VG  TV         R
Sbjct: 51  WLRANMVSSLDG-AGQHDGRSQPLSSEEDMRIFGTLRALADVVVVGAETV---------R 100

Query: 211 LNG-----------------LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD 253
           L G                  Q  +P   ++     L     +    L+  +++      
Sbjct: 101 LEGYRPARAREAFAARREAAGQGPAPAIAVVSASLNLDFSLPLFTEPLVPTLVLTGAAAP 160

Query: 254 PVLALAFRKKNINIIYCD---CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
                A R     ++        +  +   +L  RG+   L EGG  +   F+ +  +D 
Sbjct: 161 AERVAAARAAGAEVLVAGDGAGVEPARARAVLAERGLRRQLTEGGPRLLGQFVAADALDE 220

Query: 311 IILYRSQIVIGEGG 324
           + L  S  +     
Sbjct: 221 LCLTVSPTMTSGAA 234


>gi|323344020|ref|ZP_08084246.1| cytidine/deoxycytidylate deaminase [Prevotella oralis ATCC 33269]
 gi|323094749|gb|EFZ37324.1| cytidine/deoxycytidylate deaminase [Prevotella oralis ATCC 33269]
          Length = 148

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 54/151 (35%), Gaps = 38/151 (25%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
            D R++  A  ++            V  L+VK+ ++I  G     G P            
Sbjct: 11  LDLRYLRMARVWAENSYCKRR---QVGALVVKNKMIISDGY---NGTPSGFENVCEDENS 64

Query: 54  -------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A   L  +   + G+T YVT  PC        CA+ II+ GI+RVV  
Sbjct: 65  ITKPYVLHAEANAITKLARSSNNSDGSTLYVTASPCIE------CAKLIIQAGIKRVVYG 118

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
                      G+  L +  I V  +   E 
Sbjct: 119 ERYRL----EDGINLLRRANIEVIYLNPDEY 145


>gi|281423636|ref|ZP_06254549.1| tRNA-specific adenosine deaminase [Prevotella oris F0302]
 gi|281402188|gb|EFB33019.1| tRNA-specific adenosine deaminase [Prevotella oris F0302]
          Length = 154

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 52/147 (35%), Gaps = 17/147 (11%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--TAYGG--CPHAEVQAL 60
           + D ++M  AL               +  +IV    +I R    T        HAE+QA+
Sbjct: 12  NKDEQYMRKALY--EAERAAEEGEIPIGAVIVCKDRIISRAHNLTEKLHDVTAHAEMQAI 69

Query: 61  EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A     G+     T YVT+EPC        CA  I    I R+V    D         
Sbjct: 70  TSAADLLGGKYLSDCTLYVTVEPC------VMCAGAIGWAQIGRIVYGASDEKRGYQLYA 123

Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYL 142
            +    K  +   ++E+E +  +  + 
Sbjct: 124 PRAFHPKATVTRGVLEAECRQLMQEFF 150


>gi|303228977|ref|ZP_07315787.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Veillonella atypica ACS-134-V-Col7a]
 gi|302516391|gb|EFL58323.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Veillonella atypica ACS-134-V-Col7a]
          Length = 159

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 52/144 (36%), Gaps = 33/144 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT---------------- 47
           S+D  FM  A+  ++        N  V   IV  D  ++  G                  
Sbjct: 9   SWDEYFMGVAILAAQRSK---DPNTQVGACIVSNDNKILSIGYNGMPLNCSDDDFTWERD 65

Query: 48  -----AYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                 Y    H+E+ A+    G    G+  YVTL PC+       CA+ II+ GI+ V+
Sbjct: 66  TADDNKYFYTVHSELNAILNYRGGSLEGSKIYVTLFPCNE------CAKAIIQSGIKAVL 119

Query: 102 VCVD-DPDVRVSGRGLQWLSQKGI 124
              D   D +      + L   G+
Sbjct: 120 YRDDLYKDTKEVKASKRMLKTAGV 143


>gi|257438151|ref|ZP_05613906.1| tRNA-specific adenosine deaminase [Faecalibacterium prausnitzii
           A2-165]
 gi|257199482|gb|EEU97766.1| tRNA-specific adenosine deaminase [Faecalibacterium prausnitzii
           A2-165]
          Length = 162

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 19/128 (14%)

Query: 30  SVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCS 80
            V  ++ ++G +I        T      HAE+ A++ A ++  G        +VTLEPC 
Sbjct: 24  PVGAVVARNGEIIAAAHNTRETEKNALHHAELLAIDAACKKLGGWRLWQCELFVTLEPC- 82

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS----QKGIIVDRMMESEGKI 136
                P C+  II   IRRVV    D      G      +       ++   +   E + 
Sbjct: 83  -----PMCSGGIINSRIRRVVYGAADTKAGCCGSVTDLFALPFNHHPVVERGLRAEEAQA 137

Query: 137 FLHAYLTR 144
            L A+  R
Sbjct: 138 LLQAFFLR 145


>gi|254457747|ref|ZP_05071175.1| deoxycytidylate deaminase [Campylobacterales bacterium GD 1]
 gi|207086539|gb|EDZ63823.1| deoxycytidylate deaminase [Campylobacterales bacterium GD 1]
          Length = 147

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 57/150 (38%), Gaps = 37/150 (24%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
           D  F++ A   +     ++     V  +IVKDG ++  G                     
Sbjct: 4   DQNFINIAQELATASKCVSK---QVGAVIVKDGRILSTGYNGTPAGFTNCCDHWNGEYTP 60

Query: 54  -----------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                      HAE+ A+      G    GA+ +VTLEPCS   ++      +I  GI+R
Sbjct: 61  DHHEWSKTYEIHAEMNAIIWAARKGISIEGASIFVTLEPCSECSKN------LIASGIKR 114

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           +V   +      S    +++   G+ ++++
Sbjct: 115 IVYAKEYEHTH-SDTISKFIKDNGVSIEQL 143


>gi|332969045|gb|EGK08085.1| tRNA-specific adenosine deaminase [Kingella kingae ATCC 23330]
          Length = 246

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 15/99 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  ++V  G +I +             HAE+ AL  AG+            YV+LEPC 
Sbjct: 118 PVGAVVVHRGEIIAQAHNRCIADCDIGRHAEMNALALAGKTLGNYRLADCDLYVSLEPC- 176

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                  CA  +I+  IRRV+    +P    +G  +   
Sbjct: 177 -----TMCASAMIQARIRRVIFAASEPKTGAAGSVINLF 210


>gi|148272847|ref|YP_001222408.1| putative pyrimidine reductase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830777|emb|CAN01717.1| putative pyrimidine reductase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 248

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 72/177 (40%), Gaps = 17/177 (9%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
           H+ L    S D  +  A   S  ++  + +  + ++R  +D +LVG GTV A+   L  R
Sbjct: 41  HVRLNFVASVDGSVVGADGTSDSLSSVVDRRILGVIRELADVVLVGAGTVRAERYVLPRR 100

Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA----FRKKNIN 266
                       +      L    +    A    ++++   +    A+A       + + 
Sbjct: 101 TPLA--------VATSSGDL-EGHRFDPDAAQGRLLVLCPPEARDRAVATLDGVPAEIVT 151

Query: 267 IIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
           +      D +     ++  L GRG+T ++ EGG A+A S +++  VD + L  S  +
Sbjct: 152 VPLGAAADGRMSGDVVVDALRGRGLTHVVCEGGPALAASLVSAGRVDELCLTTSPEL 208


>gi|223984558|ref|ZP_03634689.1| hypothetical protein HOLDEFILI_01984 [Holdemania filiformis DSM
           12042]
 gi|223963486|gb|EEF67867.1| hypothetical protein HOLDEFILI_01984 [Holdemania filiformis DSM
           12042]
          Length = 160

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 57/150 (38%), Gaps = 35/150 (23%)

Query: 5   SFDARFMSAA-LRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-------------TAY 49
           S+D  FM  A L   R     T     V  +IV  +  V+G G                 
Sbjct: 8   SWDEYFMGLAHLSAMRSKDPSTQ----VGAVIVDQEHKVVGIGYNGLPIGCSDDEFPWDR 63

Query: 50  GGCP---------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
            G           HAE+ A+  +  +  G T YV+L PC+       CA+ II+ GIR++
Sbjct: 64  EGGMLETKYAFVVHAELNAILNSTRDLHGCTLYVSLFPCNE------CAKAIIQSGIRKI 117

Query: 101 VVCVDDP-DVRVSGRGLQWLSQKGIIVDRM 129
           V   D            + L+  G+ + R+
Sbjct: 118 VYEDDKYAAADNVIASKKMLNAAGVELVRL 147


>gi|146298293|ref|YP_001192884.1| CMP/dCMP deaminase, zinc-binding [Flavobacterium johnsoniae UW101]
 gi|146152711|gb|ABQ03565.1| CMP/dCMP deaminase, zinc-binding [Flavobacterium johnsoniae UW101]
          Length = 143

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 36/148 (24%)

Query: 9   RFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53
           ++  A LR ++ W +        V  +IVKD ++I  G     G P              
Sbjct: 8   KYDKAYLRIAKEWSLLSYCKRKQVGAIIVKDRMIISDGY---NGTPSGFENCCEDEDGLT 64

Query: 54  -----HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE  A+     + +   GAT Y+TL PC        C++ I + GI+RVV    
Sbjct: 65  RWDVLHAEANAILKVARSTQSCEGATLYITLSPCKE------CSKLIHQSGIKRVVY--- 115

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESE 133
             D      G+Q+L + G+ V+ +   E
Sbjct: 116 -KDGYRDDSGIQFLIKAGVEVEHIPVLE 142


>gi|94312654|ref|YP_585863.1| CMP/dCMP deaminase [Cupriavidus metallidurans CH34]
 gi|93356506|gb|ABF10594.1| CMP/dCMP deaminase [Cupriavidus metallidurans CH34]
          Length = 156

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 17/110 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
            R++  A+  +R    L         +IVKDG VI  GV           HAE+ A+  A
Sbjct: 7   ERYLGEAIELAR--TNLEQGGRPFGAVIVKDGEVIATGVNQILSTNDPTAHAELTAIRAA 64

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            ++       G   Y +  PC      P C   +   G++ V     + D
Sbjct: 65  SQKLGSPSLDGCAVYASGHPC------PMCMAAMRMAGVKEVTYAYSNDD 108


>gi|332519190|ref|ZP_08395657.1| CMP/dCMP deaminase, zinc-binding [Lacinutrix algicola 5H-3-7-4]
 gi|332045038|gb|EGI81231.1| CMP/dCMP deaminase, zinc-binding [Lacinutrix algicola 5H-3-7-4]
          Length = 143

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 61/150 (40%), Gaps = 33/150 (22%)

Query: 1   MPVSSFDARFMSAALRFS-RWHVGLTSTNPSVACLIVKDGIVIG---------------- 43
           MP +    ++  A LR +  W          V  LIVKD ++I                 
Sbjct: 1   MPKNKQ-HKYDKAYLRIAQEWGKLSHCKRKQVGALIVKDRMIISDGFNGTPTGFENPCED 59

Query: 44  -RGVTAYGGCPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
             G T +    HAE  A+     + +   GAT Y+TL PC        C++ I + GI R
Sbjct: 60  EEGYTKWY-VLHAEANAILKVASSTQSCNGATLYITLSPCKE------CSKLIHQAGIIR 112

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           VV      D      GL++L + GI ++R+
Sbjct: 113 VVYKEGYKD----DSGLRFLEKAGIEIERI 138


>gi|313836522|gb|EFS74236.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL037PA2]
 gi|314928976|gb|EFS92807.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL044PA1]
 gi|314971034|gb|EFT15132.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL037PA3]
          Length = 156

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 50/150 (33%), Gaps = 23/150 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEE 62
            + M+ AL  +R        +  +  +++  DG V+               HAEV A+  
Sbjct: 5   RQAMTQALDVARRAA--AWGDVPIGAVVLGSDGDVLSEAGNERELTGDPTAHAEVLAIRR 62

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G      T  VTLEPC        CA  I+   I RVV    DP          
Sbjct: 63  AAEARDGWRLGDCTLIVTLEPC------TMCAGAIVAARIPRVVFGAFDPKAGAVSSLFD 116

Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYL 142
            +       +  +V  +M  E    L  + 
Sbjct: 117 VMRDPRLPHRTEVVTGVMVEESSALLREFF 146


>gi|239820133|ref|YP_002947318.1| CMP/dCMP deaminase zinc-binding [Variovorax paradoxus S110]
 gi|239804986|gb|ACS22052.1| CMP/dCMP deaminase zinc-binding [Variovorax paradoxus S110]
          Length = 158

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 23/120 (19%)

Query: 3   VSSFD---ARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CP 53
           +S  D    ++M  A+R +        T        ++V++G V+ R V           
Sbjct: 1   MSQPDPNAEKYMLDAIRLAMRNVRERRTWP---FGAVLVREGKVLARAVNEVDALCDPTA 57

Query: 54  HAEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+QA+  A     G +  G+  Y +  PC      P C   +   G++ V     + D
Sbjct: 58  HAEMQAVRMAAKAQGGTDLSGSVVYASGYPC------PMCLTAMFLAGVKEVCYAYSNED 111


>gi|160942564|ref|ZP_02089811.1| hypothetical protein FAEPRAM212_00039 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446148|gb|EDP23151.1| hypothetical protein FAEPRAM212_00039 [Faecalibacterium prausnitzii
           M21/2]
          Length = 169

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 48/126 (38%), Gaps = 19/126 (15%)

Query: 30  SVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCS 80
            V  ++ + G V+        T      HAE+ A++ A +   G        +VTLEPC 
Sbjct: 27  PVGAVVARHGEVVATAHNTRETEKNALHHAELLAIDAACKALGGWRLWECELFVTLEPC- 85

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS----QKGIIVDRMMESEGKI 136
                P CA  II   +RRVV    D      G      +       ++   + E+E + 
Sbjct: 86  -----PMCAGGIINSRLRRVVYGAADTKAGCCGSVTDLFALPFNHHPVVEKGLREAEAQQ 140

Query: 137 FLHAYL 142
            L A+ 
Sbjct: 141 LLQAFF 146


>gi|189466441|ref|ZP_03015226.1| hypothetical protein BACINT_02816 [Bacteroides intestinalis DSM
           17393]
 gi|189434705|gb|EDV03690.1| hypothetical protein BACINT_02816 [Bacteroides intestinalis DSM
           17393]
          Length = 175

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 37/113 (32%), Gaps = 17/113 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
              M  A+  S  +V           +I KDG +I  G            HAEV A+  A
Sbjct: 24  EELMRKAIELSTENVANGGG--PFGAVIAKDGEIIATGTNRVTASCDPTAHAEVSAIRAA 81

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
             +       G   Y + EPC      P C   I    + R+    +  D + 
Sbjct: 82  ATKLGTFNLSGCEIYTSCEPC------PMCLGAIYWARLERMYYGNNKTDAKN 128


>gi|295103971|emb|CBL01515.1| tRNA-adenosine deaminase [Faecalibacterium prausnitzii SL3/3]
          Length = 166

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 19/126 (15%)

Query: 30  SVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCS 80
            V  ++ + G VI        T      HAE+ A++ A +   G        +VTLEPC 
Sbjct: 24  PVGAVVARHGEVIATAHNTRETEKNALHHAELLAIDAACKALGGWRLWECELFVTLEPC- 82

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS----QKGIIVDRMMESEGKI 136
                P CA  II   +RRVV    D      G      +       ++   + E+E + 
Sbjct: 83  -----PMCAGGIINSRLRRVVYGAADTKAGCCGSVTDLFALPFNHHPVVEKGLREAEAQQ 137

Query: 137 FLHAYL 142
            L A+ 
Sbjct: 138 LLQAFF 143


>gi|242219384|ref|XP_002475472.1| predicted protein [Postia placenta Mad-698-R]
 gi|220725331|gb|EED79323.1| predicted protein [Postia placenta Mad-698-R]
          Length = 175

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 23/123 (18%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
           ++M  A++ +   + L      V C+ V+DG VI +             HAE++A++E  
Sbjct: 9   QWMRQAMQMAE--IALAHGEVPVGCIFVRDGRVIAQARNRTNKLRNATRHAELEAIDEIL 66

Query: 65  EE-----------ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            +               T YVT+EPC        CA  + + GI+ V    ++      G
Sbjct: 67  ADKQWTPALTPYPLSETTLYVTVEPCIM------CASALRQLGIKEVFYGCENDRFGGCG 120

Query: 114 RGL 116
             L
Sbjct: 121 SVL 123


>gi|159035903|ref|YP_001535156.1| CMP/dCMP deaminase zinc-binding [Salinispora arenicola CNS-205]
 gi|157914738|gb|ABV96165.1| CMP/dCMP deaminase zinc-binding [Salinispora arenicola CNS-205]
          Length = 165

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 44/128 (34%), Gaps = 19/128 (14%)

Query: 8   ARFMSAALRFSRWHVGLTST---NPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQA 59
             +M  AL  +      T T   +  V  +++  DG  +  G            HAEV A
Sbjct: 18  ELWMRRALEVAVTGADPTVTVVDDIPVGAVLLGPDGTELATGRNERELTGDPTAHAEVLA 77

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           L  A          G T  VTLEPC        CA  ++   +  VV    +P    +G 
Sbjct: 78  LRRAAGRLGRWRLDGCTLVVTLEPC------TMCAGALVLARVSTVVFGAWEPKTGAAGS 131

Query: 115 GLQWLSQK 122
               L  +
Sbjct: 132 LWDVLRDR 139


>gi|237717577|ref|ZP_04548058.1| predicted protein [Bacteroides sp. 2_2_4]
 gi|229453081|gb|EEO58872.1| predicted protein [Bacteroides sp. 2_2_4]
          Length = 232

 Score = 66.1 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 51/111 (45%), Gaps = 3/111 (2%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
           ++LD +       +         V++ + ++ P  A +    N++I+Y +  DL K++  
Sbjct: 88  VLLDNNHLTLHGIEYFVQYSKNFVLVTSNSEHP--AFSINADNLHILYYENLDLHKMMED 145

Query: 282 LVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           L  + G   + ++ G  +   F+  +L D + +  + I++G    P+ ++ 
Sbjct: 146 LYQKFGCNKITIQTGGTLNGMFLREKLFDYVDIIVAPILVGGSDTPTLIDG 196


>gi|255324366|ref|ZP_05365485.1| tRNA-specific adenosine deaminase [Corynebacterium
           tuberculostearicum SK141]
 gi|255298585|gb|EET77883.1| tRNA-specific adenosine deaminase [Corynebacterium
           tuberculostearicum SK141]
          Length = 143

 Score = 66.1 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 50/148 (33%), Gaps = 25/148 (16%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEA-- 63
           M  AL  ++      + +  V  ++    G  +  GV           HAEV+A+ +A  
Sbjct: 1   MRRALDVAKR---TPAGDVPVGAVLYDAAGTELATGVNRREELADPTAHAEVEAIRQAVR 57

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
               G    G    VTLEPC+       CA  +    +  VV    +P     G  +  L
Sbjct: 58  VHGDGWRLSGCELVVTLEPCAM------CAGALQAARVGSVVFGAFEPKTGACGSLIDVL 111

Query: 120 SQKGI-----IVDRMMESEGKIFLHAYL 142
                     +   ++E E    L  + 
Sbjct: 112 RAPTAPFTPQVRGGVLEEECAALLRNFF 139


>gi|313826960|gb|EFS64674.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL063PA1]
          Length = 149

 Score = 66.1 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 50/147 (34%), Gaps = 23/147 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA-- 63
           M+ AL  +R     T  +  +  +I+  +G V+               HAEV A+  A  
Sbjct: 1   MTQALDVARRAA--TRGDVPIGAVILGANGEVLSEAGNERERTGDPTAHAEVLAIRRAAE 58

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G      T  VTLEPC+    +      I+   I RVV    DP           + 
Sbjct: 59  ARDGWRLGDCTLVVTLEPCTMCAGT------IVAARIPRVVFGAFDPKAGAVSSLFDAMR 112

Query: 121 QKGI-----IVDRMMESEGKIFLHAYL 142
              +     +V  +M  E    L  + 
Sbjct: 113 DPRLPHRPKVVTGVMAEESSALLREFF 139


>gi|71003327|ref|XP_756344.1| hypothetical protein UM00197.1 [Ustilago maydis 521]
 gi|46096349|gb|EAK81582.1| hypothetical protein UM00197.1 [Ustilago maydis 521]
          Length = 1260

 Score = 66.1 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 61/180 (33%), Gaps = 40/180 (22%)

Query: 3    VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
             S  D ++M  AL  ++  +   +  P V  + V+ G VI RG            HAE++
Sbjct: 930  QSEEDIKWMREALVMAQEAL-DANEVP-VGGVFVRKGEVIARGRNRTNELMNATRHAELE 987

Query: 59   ALE--------EAGEEA-------------RGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
            A++         A + A             +  T YVT+EPC   G        + + GI
Sbjct: 988  AIDHILSVMPPSAPDFAVAPHSGPEGDNPFKDTTLYVTIEPCIMCG------AALRQIGI 1041

Query: 98   RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME-------SEGKIFLHAYLTRQVEKRS 150
             RVV    +     +G  L       I+     E        E  + L  +   +     
Sbjct: 1042 GRVVFGAGNERFGGNGSVLGLHDDDAIVSSPGYESVGGYLRDEAIMMLRRFYVTENTNAP 1101


>gi|107103002|ref|ZP_01366920.1| hypothetical protein PaerPA_01004071 [Pseudomonas aeruginosa PACS2]
 gi|254236421|ref|ZP_04929744.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126168352|gb|EAZ53863.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 180

 Score = 66.1 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 3/97 (3%)

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
           VL    R+  +  +       ++ L  L  +G   + + GG ++A S + + L+D +I+ 
Sbjct: 74  VLTRNPRESAVEGVELRHGTPQEGLARLGEQGCRRVWLAGGGSLAGSCLAAGLLDEVIVS 133

Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
               ++G G    PL  G  E+    + +  + S + 
Sbjct: 134 VIPQLLGAG---IPLFAGGRERRLQLLEQHGYNSGIV 167


>gi|254719939|ref|ZP_05181750.1| cytidine and deoxycytidylate deaminase family protein [Brucella sp.
           83/13]
 gi|265984947|ref|ZP_06097682.1| CMP/dCMP deaminase zinc-binding protein [Brucella sp. 83/13]
 gi|306838528|ref|ZP_07471366.1| cytidine and deoxycytidylate deaminase family protein [Brucella sp.
           NF 2653]
 gi|264663539|gb|EEZ33800.1| CMP/dCMP deaminase zinc-binding protein [Brucella sp. 83/13]
 gi|306406395|gb|EFM62636.1| cytidine and deoxycytidylate deaminase family protein [Brucella sp.
           NF 2653]
          Length = 157

 Score = 66.1 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 52/146 (35%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG-- 64
           M  AL  +    G     P +  +IV+DG +I R             HAE+  + +AG  
Sbjct: 16  MDIALEEAH-AAGERGEVP-IGAVIVRDGEIIARAGNRTREFNDVTAHAEILTIRQAGEV 73

Query: 65  ---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW--- 118
              E       YVTLEPC+       CA  I    IRR+     DP       G ++   
Sbjct: 74  LGSERLVDCDLYVTLEPCAM------CAAAISFARIRRLYYGASDPKGGGIEHGGRFYTQ 127

Query: 119 --LSQKGIIVDRMMESEGKIFLHAYL 142
                   I     E++ +  L  + 
Sbjct: 128 PTCHHAPEIYPGFCEADARKILKDFF 153


>gi|328906579|gb|EGG26354.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium sp. P08]
          Length = 160

 Score = 66.1 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 50/150 (33%), Gaps = 23/150 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEE 62
            + M+ AL  +R        +  +  +++  DG V+               HAEV A+  
Sbjct: 9   RQAMTQALDVARRAA--AWGDVPIGAVVLGSDGDVLSEAGNERELTGDPTAHAEVLAIRR 66

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G      T  VTLEPC        CA  I+   I RVV    DP          
Sbjct: 67  AAEARDGWRLGDCTLIVTLEPC------TMCAGAIVAARIPRVVFGAFDPKAGAVSSLFD 120

Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYL 142
            +       +  +V  +M  E    L  + 
Sbjct: 121 VMRDPRLPHRTEVVTGVMVEESSALLREFF 150


>gi|148243600|ref|YP_001228757.1| nucleoside deaminase [Synechococcus sp. RCC307]
 gi|147851910|emb|CAK29404.1| Nucleoside deaminase [Synechococcus sp. RCC307]
          Length = 163

 Score = 66.1 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 15/117 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
           M  +    +FM+ A+  SR       +      +IV+DG+VI     +  G      HAE
Sbjct: 1   MSSADQHEQFMAQAIEISRQTALEERSGEPFGAVIVRDGVVIAAEGNSVNGDSDPTAHAE 60

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           + A+  AG      +  G   Y +   C      P C       GIR++       D
Sbjct: 61  INAIRAAGRALGTWDLSGCVLYASSRCC------PMCYGAAHWAGIRKIYYGAGWED 111


>gi|327356422|gb|EGE85279.1| tRNA specific adenosine deaminase [Ajellomyces dermatitidis ATCC
           18188]
          Length = 174

 Score = 66.1 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 20/136 (14%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEE-----ARGATAYVTLEPCS 80
            V C++V +  VIG G+        G  HAE  A+EE          R    YVT+EPC 
Sbjct: 15  PVGCVLVHNDEVIGSGMNDTNKSMNGTRHAEFLAIEEVLRSHPRSIFRETDLYVTVEPCI 74

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII-----VDRMMESEGK 135
                  CA  + +  IR V     +     +G  L+  S  GI         +   E  
Sbjct: 75  M------CASALRQYQIRHVYFGCANERFGGTGGVLKLHSDPGIDPPYGLTGGLFRKEAI 128

Query: 136 IFLHAYLTRQVEKRSH 151
           + L  +  ++ E+  +
Sbjct: 129 MLLRRFYIQENERAPN 144


>gi|62317152|ref|YP_223005.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           abortus bv. 1 str. 9-941]
 gi|83269135|ref|YP_418426.1| cytidine/deoxycytidylate deaminase [Brucella melitensis biovar
           Abortus 2308]
 gi|161620282|ref|YP_001594168.1| CMP/dCMP deaminase zinc-binding [Brucella canis ATCC 23365]
 gi|189022411|ref|YP_001932152.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Brucella
           abortus S19]
 gi|254691365|ref|ZP_05154619.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           abortus bv. 6 str. 870]
 gi|254695335|ref|ZP_05157163.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           abortus bv. 3 str. Tulya]
 gi|254698431|ref|ZP_05160259.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254699495|ref|ZP_05161323.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           suis bv. 5 str. 513]
 gi|254702619|ref|ZP_05164447.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           suis bv. 3 str. 686]
 gi|254706250|ref|ZP_05168078.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           pinnipedialis M163/99/10]
 gi|254711456|ref|ZP_05173267.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           pinnipedialis B2/94]
 gi|254712059|ref|ZP_05173870.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           ceti M644/93/1]
 gi|254715129|ref|ZP_05176940.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           ceti M13/05/1]
 gi|254731878|ref|ZP_05190456.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           abortus bv. 4 str. 292]
 gi|256014990|ref|YP_003104999.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           microti CCM 4915]
 gi|256029913|ref|ZP_05443527.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           pinnipedialis M292/94/1]
 gi|256043124|ref|ZP_05446066.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256059562|ref|ZP_05449761.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           neotomae 5K33]
 gi|256111894|ref|ZP_05452850.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|256158082|ref|ZP_05456000.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           ceti M490/95/1]
 gi|256252963|ref|ZP_05458499.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           ceti B1/94]
 gi|256256550|ref|ZP_05462086.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           abortus bv. 9 str. C68]
 gi|260166985|ref|ZP_05753796.1| cytidine and deoxycytidylate deaminase family protein [Brucella sp.
           F5/99]
 gi|260544385|ref|ZP_05820206.1| cytidine/deoxycytidylate deaminase [Brucella abortus NCTC 8038]
 gi|260564346|ref|ZP_05834831.1| cytidine/deoxycytidylate deaminase [Brucella melitensis bv. 1 str.
           16M]
 gi|260568473|ref|ZP_05838942.1| cytidine/deoxycytidylate deaminase [Brucella suis bv. 4 str. 40]
 gi|260756977|ref|ZP_05869325.1| CMP/dCMP deaminase zinc-binding protein [Brucella abortus bv. 6
           str. 870]
 gi|260759649|ref|ZP_05871997.1| CMP/dCMP deaminase zinc-binding protein [Brucella abortus bv. 4
           str. 292]
 gi|260762892|ref|ZP_05875224.1| CMP/dCMP deaminase zinc-binding protein [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260882788|ref|ZP_05894402.1| cytidine/deoxycytidylate deaminase [Brucella abortus bv. 9 str.
           C68]
 gi|261215706|ref|ZP_05929987.1| CMP/dCMP deaminase zinc-binding protein [Brucella abortus bv. 3
           str. Tulya]
 gi|261216837|ref|ZP_05931118.1| CMP/dCMP deaminase zinc-binding protein [Brucella ceti M13/05/1]
 gi|261220056|ref|ZP_05934337.1| cytidine/deoxycytidylate deaminase [Brucella ceti B1/94]
 gi|261313693|ref|ZP_05952890.1| CMP/dCMP deaminase zinc-binding protein [Brucella pinnipedialis
           M163/99/10]
 gi|261319065|ref|ZP_05958262.1| CMP/dCMP deaminase zinc-binding protein [Brucella pinnipedialis
           B2/94]
 gi|261319704|ref|ZP_05958901.1| CMP/dCMP deaminase zinc-binding protein [Brucella ceti M644/93/1]
 gi|261323530|ref|ZP_05962727.1| cytidine/deoxycytidylate deaminase [Brucella neotomae 5K33]
 gi|261749950|ref|ZP_05993659.1| CMP/dCMP deaminase zinc-binding protein [Brucella suis bv. 5 str.
           513]
 gi|261753203|ref|ZP_05996912.1| CMP/dCMP deaminase zinc-binding protein [Brucella suis bv. 3 str.
           686]
 gi|261756372|ref|ZP_06000081.1| cytidine/deoxycytidylate deaminase [Brucella sp. F5/99]
 gi|265986931|ref|ZP_06099488.1| CMP/dCMP deaminase zinc-binding protein [Brucella pinnipedialis
           M292/94/1]
 gi|265989556|ref|ZP_06102113.1| CMP/dCMP deaminase zinc-binding protein [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265993342|ref|ZP_06105899.1| cytidine/deoxycytidylate deaminase [Brucella melitensis bv. 3 str.
           Ether]
 gi|265996597|ref|ZP_06109154.1| CMP/dCMP deaminase zinc-binding protein [Brucella ceti M490/95/1]
 gi|294853219|ref|ZP_06793891.1| cytosine deaminase [Brucella sp. NVSL 07-0026]
 gi|62197345|gb|AAX75644.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           abortus bv. 1 str. 9-941]
 gi|82939409|emb|CAJ12363.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Brucella
           melitensis biovar Abortus 2308]
 gi|161337093|gb|ABX63397.1| CMP/dCMP deaminase zinc-binding [Brucella canis ATCC 23365]
 gi|189020985|gb|ACD73706.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Brucella
           abortus S19]
 gi|255997650|gb|ACU49337.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           microti CCM 4915]
 gi|260097656|gb|EEW81530.1| cytidine/deoxycytidylate deaminase [Brucella abortus NCTC 8038]
 gi|260151989|gb|EEW87082.1| cytidine/deoxycytidylate deaminase [Brucella melitensis bv. 1 str.
           16M]
 gi|260155138|gb|EEW90219.1| cytidine/deoxycytidylate deaminase [Brucella suis bv. 4 str. 40]
 gi|260669967|gb|EEX56907.1| CMP/dCMP deaminase zinc-binding protein [Brucella abortus bv. 4
           str. 292]
 gi|260673313|gb|EEX60134.1| CMP/dCMP deaminase zinc-binding protein [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260677085|gb|EEX63906.1| CMP/dCMP deaminase zinc-binding protein [Brucella abortus bv. 6
           str. 870]
 gi|260872316|gb|EEX79385.1| cytidine/deoxycytidylate deaminase [Brucella abortus bv. 9 str.
           C68]
 gi|260917313|gb|EEX84174.1| CMP/dCMP deaminase zinc-binding protein [Brucella abortus bv. 3
           str. Tulya]
 gi|260918640|gb|EEX85293.1| cytidine/deoxycytidylate deaminase [Brucella ceti B1/94]
 gi|260921926|gb|EEX88494.1| CMP/dCMP deaminase zinc-binding protein [Brucella ceti M13/05/1]
 gi|261292394|gb|EEX95890.1| CMP/dCMP deaminase zinc-binding protein [Brucella ceti M644/93/1]
 gi|261298288|gb|EEY01785.1| CMP/dCMP deaminase zinc-binding protein [Brucella pinnipedialis
           B2/94]
 gi|261299510|gb|EEY03007.1| cytidine/deoxycytidylate deaminase [Brucella neotomae 5K33]
 gi|261302719|gb|EEY06216.1| CMP/dCMP deaminase zinc-binding protein [Brucella pinnipedialis
           M163/99/10]
 gi|261736356|gb|EEY24352.1| cytidine/deoxycytidylate deaminase [Brucella sp. F5/99]
 gi|261739703|gb|EEY27629.1| CMP/dCMP deaminase zinc-binding protein [Brucella suis bv. 5 str.
           513]
 gi|261742956|gb|EEY30882.1| CMP/dCMP deaminase zinc-binding protein [Brucella suis bv. 3 str.
           686]
 gi|262550894|gb|EEZ07055.1| CMP/dCMP deaminase zinc-binding protein [Brucella ceti M490/95/1]
 gi|262764212|gb|EEZ10244.1| cytidine/deoxycytidylate deaminase [Brucella melitensis bv. 3 str.
           Ether]
 gi|263000225|gb|EEZ12915.1| CMP/dCMP deaminase zinc-binding protein [Brucella melitensis bv. 1
           str. Rev.1]
 gi|264659128|gb|EEZ29389.1| CMP/dCMP deaminase zinc-binding protein [Brucella pinnipedialis
           M292/94/1]
 gi|294818874|gb|EFG35874.1| cytosine deaminase [Brucella sp. NVSL 07-0026]
          Length = 157

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 52/146 (35%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG-- 64
           M  AL  +    G     P +  +IV+DG +I R             HAE+  + +AG  
Sbjct: 16  MDIALEEAH-AAGERGEVP-IGAVIVRDGEIIARAGNRTREFNDVTAHAEILTIRQAGEM 73

Query: 65  ---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW--- 118
              E       YVTLEPC+       CA  I    IRR+     DP       G ++   
Sbjct: 74  LGSERLIDCDLYVTLEPCAM------CAAAISFARIRRLYYGASDPKGGGIEHGGRFYTQ 127

Query: 119 --LSQKGIIVDRMMESEGKIFLHAYL 142
                   I     E++ +  L  + 
Sbjct: 128 PTCHHAPEIYPGFCEADARKILKDFF 153


>gi|225686059|ref|YP_002734031.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           melitensis ATCC 23457]
 gi|256262820|ref|ZP_05465352.1| cytidine/deoxycytidylate deaminase [Brucella melitensis bv. 2 str.
           63/9]
 gi|225642164|gb|ACO02077.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           melitensis ATCC 23457]
 gi|263092641|gb|EEZ16862.1| cytidine/deoxycytidylate deaminase [Brucella melitensis bv. 2 str.
           63/9]
 gi|326410383|gb|ADZ67447.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           melitensis M28]
          Length = 157

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 52/146 (35%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG-- 64
           M  AL  +    G     P +  +IV+DG +I R             HAE+  + +AG  
Sbjct: 16  MDIALEEAH-AAGERGEVP-IGAVIVRDGEIIARAGNRTREFNDVTAHAEILTIRQAGEM 73

Query: 65  ---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW--- 118
              E       YVTLEPC+       CA  I    IRR+     DP       G ++   
Sbjct: 74  LGSERLIDCDLYVTLEPCAM------CAAAISFARIRRLYYGASDPKGGGIEHGGRFYTQ 127

Query: 119 --LSQKGIIVDRMMESEGKIFLHAYL 142
                   I     E++ +  L  + 
Sbjct: 128 LTCHHAPEIYPGFCEADARKILKDFF 153


>gi|56963412|ref|YP_175143.1| late competence protein ComEB [Bacillus clausii KSM-K16]
 gi|56909655|dbj|BAD64182.1| late competence protein ComEB [Bacillus clausii KSM-K16]
          Length = 196

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 54/164 (32%), Gaps = 36/164 (21%)

Query: 1   MPVSSFDARFMSAALRFSRW-HVGLTSTNPSVACLIVKDGIVIGRGVTAYGG-------- 51
           M   S+D  F    L  S+   +  T     V   IV+D  +I  G              
Sbjct: 1   MERISWDQYF----LAQSKLLSLRSTCPRLKVGATIVRDKRIIAGGYNGSVSGSDHCLDK 56

Query: 52  -----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                        HAEV AL +    G    GA  Y+T  PC H      C + +I+ GI
Sbjct: 57  GCYVVDNHCIRTVHAEVNALLQCAKFGVPTAGAEIYITHFPCIH------CTKSLIQAGI 110

Query: 98  RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
            RV    D  +   +    +   + GI    +   E  I    +
Sbjct: 111 ARVYYAKDYKNHPYAE---ELFKEAGIPCIEVELDEAAIDQQFH 151


>gi|330995719|ref|ZP_08319617.1| guanine deaminase [Paraprevotella xylaniphila YIT 11841]
 gi|329574778|gb|EGG56339.1| guanine deaminase [Paraprevotella xylaniphila YIT 11841]
          Length = 155

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 39/115 (33%), Gaps = 25/115 (21%)

Query: 8   ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQA 59
            +FM  A+  S    +   G          +IVK   ++  GV           HAEV A
Sbjct: 4   KKFMRKAIELSVENVKNGGG------PFGAVIVKGDEIVATGVNRVTAHNDPTAHAEVSA 57

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           + EA       +  G   Y + EPC      P C   I    + ++    +  D 
Sbjct: 58  IREACRRLGTFDLSGCEIYTSCEPC------PMCLGAIYWAHLDKIYYGNNKDDA 106


>gi|314933760|ref|ZP_07841125.1| ComE operon protein 2 [Staphylococcus caprae C87]
 gi|313653910|gb|EFS17667.1| ComE operon protein 2 [Staphylococcus caprae C87]
          Length = 153

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 53/148 (35%), Gaps = 34/148 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M    ++  FM+ +   +           SV   IVKD  +I  G               
Sbjct: 1   MERIKWEEYFMAQSHLLALRSTCQRL---SVGATIVKDNRIIAGGYNGSVAGEVHCIDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G    GAT YVT  PC +      C + II+ GI+
Sbjct: 58  CLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLN------CTKSIIQSGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            +    D  +   +   ++ L+Q GI  
Sbjct: 112 TIYYAEDYHNHNYA---IKLLNQSGIEY 136


>gi|146321900|ref|YP_001201611.1| cytosine/adenosine deaminase [Streptococcus suis 98HAH33]
 gi|145692706|gb|ABP93211.1| Cytosine/adenosine deaminase [Streptococcus suis 98HAH33]
          Length = 141

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 20/123 (16%)

Query: 34  LIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCSHYGR 84
           +IVKDG +IGRG  A         HAEV A++EA           +T +VT+EPC     
Sbjct: 1   MIVKDGQIIGRGHNAREELNQAIMHAEVMAIQEANNVEGNWRLLDSTLFVTIEPC----- 55

Query: 85  SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGKIFLH 139
              C+  I    I +V+    +     +G          L+ +  +   ++E+E    + 
Sbjct: 56  -VMCSGAIGLARIPQVIYGATNKKFGAAGSLYDILTDERLNHRVKVETGILEAECANIMQ 114

Query: 140 AYL 142
            + 
Sbjct: 115 DFF 117


>gi|254442522|ref|ZP_05055998.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198256830|gb|EDY81138.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 177

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 19/114 (16%)

Query: 7   DARFMSAALRFSRWHVGLTSTN-PSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
           D  +M  A   +         N   +  +I   G V+G              HAE+ A+ 
Sbjct: 25  DRYYMELAYNQAIEAW---RENEVPIGAVIEYKGEVVGSAHNRVESTNDPTAHAEMLAIT 81

Query: 62  EAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           +A    +      AT YVT EPC      P C+   +   ++RVV  V DP + 
Sbjct: 82  QASSAIKNWRLNEATLYVTKEPC------PMCSGASMMSRLKRVVYAVPDPKMG 129


>gi|288800764|ref|ZP_06406221.1| cytidine/deoxycytidylate deaminase family protein [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288332225|gb|EFC70706.1| cytidine/deoxycytidylate deaminase family protein [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 143

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 55/146 (37%), Gaps = 38/146 (26%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
            D R++  A  ++            V  ++VKD ++I  G     G P            
Sbjct: 11  LDIRYLRMARIWAENSYCERRK---VGAIVVKDKMIISDGY---NGTPEGFENVCEDSNQ 64

Query: 54  -------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A   L  +   + GAT YVT  PC        C++ II+ GI+RVV  
Sbjct: 65  ITKPYVLHAEANAITKLARSSNNSEGATLYVTASPCIE------CSKLIIQSGIKRVVYG 118

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRM 129
                      G+  L + G+ V+ +
Sbjct: 119 EKYRL----EDGINLLKRAGVDVEYL 140


>gi|256423014|ref|YP_003123667.1| CMP/dCMP deaminase zinc-binding [Chitinophaga pinensis DSM 2588]
 gi|256037922|gb|ACU61466.1| CMP/dCMP deaminase zinc-binding [Chitinophaga pinensis DSM 2588]
          Length = 159

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 16/108 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
             + RFM  A+  SR  +      P    ++V+   ++GRG            HAEV A+
Sbjct: 4   EREKRFMQMAVDLSREGMEKGDGGP-FGAIVVRGEEIVGRGWNQVLSFNDPTAHAEVVAI 62

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
            +A       +      + + EPC      P C   I     +RV   
Sbjct: 63  RDACANLNTFQLHDCEIFTSCEPC------PMCLGAIYWARPQRVYFA 104


>gi|322711018|gb|EFZ02592.1| cytidine and deoxycytidylate deaminase [Metarhizium anisopliae
           ARSEF 23]
          Length = 168

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 54/150 (36%), Gaps = 21/150 (14%)

Query: 4   SSFDAR-FMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYG-GCPHAEVQA 59
           +  D +  M  AL  +       S N  V  L+V   DG V+  G T    G  HAE   
Sbjct: 5   TEQDHKTLMRRALALAEKSPPKPS-NFRVGALLVNLYDGRVVAEGYTLECDGNTHAEECC 63

Query: 60  L----EEAGEEARG--------ATAYVTLEPC-SHYGRSPPCAQFIIECG--IRRVVVCV 104
                E+   +  G           Y T+EPC        PC + ++     IR V + V
Sbjct: 64  FIKLAEQHATKEEGLVGIIKTPHALYTTMEPCFKRLSGKLPCVERVLRQKSWIREVYLGV 123

Query: 105 DDPDVRVSGR-GLQWLSQKGIIVDRMMESE 133
            +P+  V    G   L   GI V  +   E
Sbjct: 124 QEPEKFVGQNPGRGMLESAGIKVAAVRGLE 153


>gi|254168071|ref|ZP_04874919.1| hypothetical protein ABOONEI_218 [Aciduliprofundum boonei T469]
 gi|254168095|ref|ZP_04874942.1| hypothetical protein ABOONEI_712 [Aciduliprofundum boonei T469]
 gi|289596025|ref|YP_003482721.1| CMP/dCMP deaminase zinc-binding protein [Aciduliprofundum boonei
           T469]
 gi|197622861|gb|EDY35429.1| hypothetical protein ABOONEI_712 [Aciduliprofundum boonei T469]
 gi|197623114|gb|EDY35681.1| hypothetical protein ABOONEI_218 [Aciduliprofundum boonei T469]
 gi|289533812|gb|ADD08159.1| CMP/dCMP deaminase zinc-binding protein [Aciduliprofundum boonei
           T469]
          Length = 161

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 45/134 (33%), Gaps = 39/134 (29%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D  FM  A   +      T T   V  +IVKD  ++  G                   
Sbjct: 4   SWDEYFMRMA-YLA--STRSTCTRRKVGAVIVKDKRILATGYNGPPKGLAHCDVTGCIRE 60

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G   + AT YVT  PC        CA+ +I 
Sbjct: 61  ELNVPSGERHELCRGLHAEQNAIIQAAVHGVSIKDATIYVTNHPC------VVCAKMLIN 114

Query: 95  CGIRRVVVCVDDPD 108
             I+ +V     PD
Sbjct: 115 AEIKEIVYAEGYPD 128


>gi|257058547|ref|YP_003136435.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC
           8802]
 gi|256588713|gb|ACU99599.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC
           8802]
          Length = 181

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/208 (22%), Positives = 77/208 (37%), Gaps = 45/208 (21%)

Query: 156 IAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
           IA S D  I  +  G   +        S           DAI++G  T       LT   
Sbjct: 7   IATSLDGFIATSNGGLEWLEELPNPEQSDYGYAEFMKSIDAIMMGRNTFEK---VLT--F 61

Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD 271
                + P+ I+ +   KL  D  I+  A +                             
Sbjct: 62  GQWVYNKPVFILSNSLTKLPDD--ILDKAEIIK--------------------------- 92

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D+KKL++ L  +G  +L ++GG  V  SF+   L+D II+ R  I++G+G   S   E
Sbjct: 93  -GDIKKLISQLNQKGYNNLYIDGG-QVIQSFLQEDLIDEIIITRVPIILGQG--VSLFGE 148

Query: 332 GYLEKNFMCVRRDYFGSDVCLE--YIGK 357
                 F   +   + +++ ++  YI +
Sbjct: 149 LDKTLKFRHQKTQIY-NNILVKSHYIRE 175


>gi|299141289|ref|ZP_07034426.1| cytidine/deoxycytidylate deaminase family protein [Prevotella oris
           C735]
 gi|298577249|gb|EFI49118.1| cytidine/deoxycytidylate deaminase family protein [Prevotella oris
           C735]
          Length = 148

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 53/147 (36%), Gaps = 17/147 (11%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--TAYGG--CPHAEVQAL 60
           + D ++M  AL  +            +  +IV    +I R    T        HAE+QA+
Sbjct: 6   NKDEQYMRKALYEAERAAEEGE--IPIGAVIVCKDRIISRAHNLTEKLHDVTAHAEMQAI 63

Query: 61  EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A     G+     T YVT+EPC        CA  I    I R+V    D         
Sbjct: 64  TSAADLLGGKYLSDCTLYVTVEPC------VMCAGAIGWAQIGRIVYGASDEKRGYQLYA 117

Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYL 142
            +    K  +   ++E+E +  +  + 
Sbjct: 118 PRAFHPKATVTRGVLEAECRQLMQEFF 144


>gi|295428166|ref|ZP_06820798.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590868|ref|ZP_06949506.1| competence protein ComEB [Staphylococcus aureus subsp. aureus MN8]
 gi|295128524|gb|EFG58158.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575754|gb|EFH94470.1| competence protein ComEB [Staphylococcus aureus subsp. aureus MN8]
 gi|312437943|gb|ADQ77014.1| ComE operon protein ComEB [Staphylococcus aureus subsp. aureus
           TCH60]
          Length = 156

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 49/141 (34%), Gaps = 34/141 (24%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53
             FM+ +   +           SV   IVKD  +I  G                      
Sbjct: 11  EYFMAQSHLLALRSTCQRL---SVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGH 67

Query: 54  -----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE+ AL +    G    GAT YVT  PC +      C + II+ GI+R+    D
Sbjct: 68  CIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLN------CTKSIIQAGIKRIYYAED 121

Query: 106 DPDVRVSGRGLQWLSQKGIIV 126
             +   + +    L Q GI  
Sbjct: 122 YHNHEYATK---LLKQSGIEF 139


>gi|161509817|ref|YP_001575476.1| competence protein ComEB [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253732242|ref|ZP_04866407.1| competence protein ComEB [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733160|ref|ZP_04867325.1| competence protein ComEB [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|294848619|ref|ZP_06789365.1| ComE operon protein 2 [Staphylococcus aureus A9754]
 gi|295406712|ref|ZP_06816517.1| ComE operon protein 2 [Staphylococcus aureus A8819]
 gi|297207692|ref|ZP_06924127.1| competence protein ComEB [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297245706|ref|ZP_06929571.1| ComE operon protein 2 [Staphylococcus aureus A8796]
 gi|300911773|ref|ZP_07129216.1| competence protein ComEB [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304380821|ref|ZP_07363481.1| ComE operon protein ComEB [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|160368626|gb|ABX29597.1| possible competence protein ComEB [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253724031|gb|EES92760.1| competence protein ComEB [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728916|gb|EES97645.1| competence protein ComEB [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|294824645|gb|EFG41068.1| ComE operon protein 2 [Staphylococcus aureus A9754]
 gi|294968459|gb|EFG44483.1| ComE operon protein 2 [Staphylococcus aureus A8819]
 gi|296887709|gb|EFH26607.1| competence protein ComEB [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297177357|gb|EFH36609.1| ComE operon protein 2 [Staphylococcus aureus A8796]
 gi|300886019|gb|EFK81221.1| competence protein ComEB [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304340548|gb|EFM06482.1| ComE operon protein ComEB [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|320140525|gb|EFW32379.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144063|gb|EFW35832.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 156

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 49/141 (34%), Gaps = 34/141 (24%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53
             FM+ +   +           SV   IVKD  +I  G                      
Sbjct: 11  EYFMAQSHLLALRSTCQRL---SVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGH 67

Query: 54  -----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE+ AL +    G    GAT YVT  PC +      C + II+ GI+R+    D
Sbjct: 68  CIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLN------CTKSIIQAGIKRIYYAED 121

Query: 106 DPDVRVSGRGLQWLSQKGIIV 126
             +   + +    L Q GI  
Sbjct: 122 YHNHEYATK---LLKQSGIEF 139


>gi|85717177|ref|ZP_01048135.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Nitrobacter sp. Nb-311A]
 gi|85696010|gb|EAQ33910.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Nitrobacter sp. Nb-311A]
          Length = 142

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 49/120 (40%), Gaps = 17/120 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG-- 64
           M  AL  ++   G     P + C+IV+DG VI        T      HAE+ AL  A   
Sbjct: 1   MDMALEAAKKA-GQAGEVP-IGCVIVRDGEVIATAGNRTLTDRDPTAHAEILALRAAAQA 58

Query: 65  ---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
              E   G   YVTLEPC        CA  I    IRR+     DP       G+++L+ 
Sbjct: 59  LGSERLTGCDLYVTLEPC------TMCAAAISFARIRRLYYGASDPKGGAVESGVRFLAA 112


>gi|229179327|ref|ZP_04306681.1| Cytosine deaminase [Bacillus cereus 172560W]
 gi|228604225|gb|EEK61692.1| Cytosine deaminase [Bacillus cereus 172560W]
          Length = 158

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 43/107 (40%), Gaps = 22/107 (20%)

Query: 13  AALRFSRWHVG-LTSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHAEVQALEEAGEE 66
            AL  +   +   T     V  +IV  +  VI RG            HAE+ A+  AGE 
Sbjct: 1   MALEEAEMALKENTYP---VGAVIVDGNNNVIARGRNRVHPQKDITAHAEIDAIRNAGEA 57

Query: 67  ARGA-------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
              A       T Y TLEPC      P C   I+   I+RVV  ++D
Sbjct: 58  MFDAKIKNEKFTIYSTLEPC------PMCTGGILFAKIQRVVWLLND 98


>gi|294784089|ref|ZP_06749390.1| deoxycytidylate deaminase [Fusobacterium sp. 3_1_27]
 gi|294488159|gb|EFG35504.1| deoxycytidylate deaminase [Fusobacterium sp. 3_1_27]
          Length = 161

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 52/148 (35%), Gaps = 33/148 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-------------TAYG 50
           ++D+ FM  A+  S         N  V   IV  D  ++G G                  
Sbjct: 7   NWDSYFMGIAILSSMRSK---DPNTQVGACIVNEDKRIVGVGYNGLPKGCDDKEFPWERD 63

Query: 51  GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           G           HAE+ A+  + +  +  T YV L PC        C + II+ GI+ +V
Sbjct: 64  GEFLNTKYPYVCHAELNAILNSIKSLKDCTIYVALFPCHE------CTKAIIQSGIKEIV 117

Query: 102 VCVDDP-DVRVSGRGLQWLSQKGIIVDR 128
              D   D   +    + L   G+   R
Sbjct: 118 YLSDKYTDTDSNRASKKMLDSAGVKYRR 145


>gi|34762517|ref|ZP_00143514.1| Deoxycytidylate deaminase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|237741327|ref|ZP_04571808.1| deoxycytidylate deaminase [Fusobacterium sp. 4_1_13]
 gi|256846472|ref|ZP_05551929.1| ComE operon protein 2 [Fusobacterium sp. 3_1_36A2]
 gi|27887795|gb|EAA24866.1| Deoxycytidylate deaminase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|229430859|gb|EEO41071.1| deoxycytidylate deaminase [Fusobacterium sp. 4_1_13]
 gi|256718241|gb|EEU31797.1| ComE operon protein 2 [Fusobacterium sp. 3_1_36A2]
          Length = 161

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 52/148 (35%), Gaps = 33/148 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-------------TAYG 50
           ++D+ FM  A+  S         N  V   IV  D  ++G G                  
Sbjct: 7   NWDSYFMGIAILSSMRSK---DPNTQVGACIVNEDKRIVGVGYNGLPKGCDDKEFPWERD 63

Query: 51  GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           G           HAE+ A+  + +  +  T YV L PC        C + II+ GI+ +V
Sbjct: 64  GEFLNTKYPYVCHAELNAILNSIKSLKDCTIYVALFPCHE------CTKAIIQSGIKEIV 117

Query: 102 VCVDDP-DVRVSGRGLQWLSQKGIIVDR 128
              D   D   +    + L   G+   R
Sbjct: 118 YLSDKYTDTDSNRASKKMLDSAGVKYRR 145


>gi|306845521|ref|ZP_07478090.1| cytidine and deoxycytidylate deaminase family protein [Brucella sp.
           BO1]
 gi|306273842|gb|EFM55669.1| cytidine and deoxycytidylate deaminase family protein [Brucella sp.
           BO1]
          Length = 157

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 52/146 (35%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG-- 64
           M  AL  +    G     P +  +IV+DG +I R             HAE+  + +AG  
Sbjct: 16  MDIALEEAH-AAGERGEVP-IGAVIVRDGEIIARAGNRTREFNDVTAHAEILTIRQAGEV 73

Query: 65  ---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW--- 118
              E       YVTLEPC+       CA  I    IRR+     DP       G ++   
Sbjct: 74  LGSERLIDCDLYVTLEPCAM------CAAAISFARIRRLYYGASDPKGGGIEHGGRFYTQ 127

Query: 119 --LSQKGIIVDRMMESEGKIFLHAYL 142
                   I     E++ +  L  + 
Sbjct: 128 PTCHHAPEIYPGFCEADARKILRDFF 153


>gi|168333891|ref|ZP_02692129.1| CMP/dCMP deaminase, zinc-binding protein [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 158

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 57/161 (35%), Gaps = 45/161 (27%)

Query: 5   SFDARFMSAALRFSRWHVGL-TSTNPSVACLIVKDGIVIGRGV----------------- 46
           S+D  FM      +       T T   V  ++VKD  ++  G                  
Sbjct: 4   SWDQYFM----DIAHLVKTRSTCTRRQVGAVVVKDKQILSTGYNGAPTSCTHCIELGCMR 59

Query: 47  ----------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFII 93
                            HAE  A+ +A   G    GA  YVT +PCS       CA+ +I
Sbjct: 60  TKLNIPSGERHELCRALHAEQNAITQAAKNGTAVAGAVIYVTAQPCSM------CAKVLI 113

Query: 94  ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
             GI +++   + PD       ++ L++  I +++    E 
Sbjct: 114 NSGIAKIIYQGNYPDPLA----IELLNEAKIHMEQFGTIEN 150


>gi|167628994|ref|YP_001679493.1| come operon protein 2 [Heliobacterium modesticaldum Ice1]
 gi|167591734|gb|ABZ83482.1| come operon protein 2 [Heliobacterium modesticaldum Ice1]
          Length = 146

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 51/123 (41%), Gaps = 29/123 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
            +D+ F+  A   S      T    SV  +IVKD  + G G      G P          
Sbjct: 4   DWDSYFIDIAFAVSSRS---TCPRRSVGAVIVKDKRIKGTGYNGSPAGLPHCTDAGCCMW 60

Query: 54  --------HAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                   HAEV A+ E   EE +GAT YVT  PC+       CA+ II  GIRRVV   
Sbjct: 61  NNHCVRTIHAEVNAIMECSPEERKGATIYVTDRPCAE------CAKVIISSGIRRVVFAR 114

Query: 105 DDP 107
           D  
Sbjct: 115 DYH 117


>gi|313891940|ref|ZP_07825541.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Dialister microaerophilus UPII 345-E]
 gi|313119583|gb|EFR42774.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Dialister microaerophilus UPII 345-E]
          Length = 149

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 17/110 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
           D  +M+ A++ ++    + +  P +  +I    I+I               HAE+ A+++
Sbjct: 3   DKDYMTLAIQEAKKA-YMNNEMP-IGAIITYKDIIIANSYNECEKNKNIFDHAEILAIKK 60

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           A +        G T YVT+EPC      P CA  I+   I R+V    + 
Sbjct: 61  ASKLLNTSRLTGCTLYVTIEPC------PMCAGAIMHSRIDRLVFGAFNN 104


>gi|303242511|ref|ZP_07328990.1| CMP/dCMP deaminase zinc-binding [Acetivibrio cellulolyticus CD2]
 gi|302589929|gb|EFL59698.1| CMP/dCMP deaminase zinc-binding [Acetivibrio cellulolyticus CD2]
          Length = 157

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 37/109 (33%), Gaps = 16/109 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           FM  A + +   V      P    +IVKD ++I R             HAE+ A+  A +
Sbjct: 7   FMKVAAQEAVEGVKSGHGGP-FGAVIVKDNMIIARAHNEVIKNNDPTDHAEMIAIRSAAK 65

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
                +      Y + EPC      P C   I    I +V       D 
Sbjct: 66  MLERFDLSDCELYTSCEPC------PMCFSAIHWAKIEKVFYGCTREDA 108


>gi|269838046|ref|YP_003320274.1| CMP/dCMP deaminase zinc-binding protein [Sphaerobacter thermophilus
           DSM 20745]
 gi|269787309|gb|ACZ39452.1| CMP/dCMP deaminase zinc-binding protein [Sphaerobacter thermophilus
           DSM 20745]
          Length = 148

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 56/156 (35%), Gaps = 26/156 (16%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           +S    R+M              + N +   ++V+DG VI  G            HAE  
Sbjct: 1   MSDTHERYMRL--ALEEAAKAKAAGNGAYGAVVVRDGQVIATGRNEATTTSDPTAHAETI 58

Query: 59  ALEEAG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS- 112
           A+  AG      +  G T Y T +PC      P C   I+  GI  VV+     D   + 
Sbjct: 59  AVRNAGMALGTLDLSGCTLYATFQPC------PMCCGSILVSGISTVVIGAVPDDPAQTR 112

Query: 113 ------GRGLQWL--SQKGIIVDRMMESEGKIFLHA 140
                  R ++WL    +  ++  ++  E +  L  
Sbjct: 113 WPTYSVDRLVEWLGYQDRVTVITGVLADECRAILQP 148


>gi|149926554|ref|ZP_01914815.1| putative deaminase [Limnobacter sp. MED105]
 gi|149824917|gb|EDM84131.1| putative deaminase [Limnobacter sp. MED105]
          Length = 256

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 18/110 (16%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
           + D  +M  AL+ +R         P +   +V DG  +     A       C HAEVQA+
Sbjct: 19  AQDMPWMELALQQARLAA-QAGEVP-IGAAVVIDGKAVADAHNAPVLLNDACAHAEVQAI 76

Query: 61  EEAGEEA------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
            +A +          AT YVTL+PC        C   I+   I RVVV  
Sbjct: 77  RQACQAIGNYRLGAQATLYVTLQPCLM------CIGAILHARIGRVVVGC 120


>gi|138896089|ref|YP_001126542.1| late competence protein ComEB [Geobacillus thermodenitrificans
           NG80-2]
 gi|196248983|ref|ZP_03147683.1| ComE operon protein 2 [Geobacillus sp. G11MC16]
 gi|134267602|gb|ABO67797.1| Late competence protein ComEB [Geobacillus thermodenitrificans
           NG80-2]
 gi|196211859|gb|EDY06618.1| ComE operon protein 2 [Geobacillus sp. G11MC16]
          Length = 155

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 58/151 (38%), Gaps = 34/151 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------ 53
           M   ++D  FM+ +   +      T T  +V   IV+D  +I  G      G        
Sbjct: 1   MERMTWDQYFMAQSHLLALRS---TCTRLAVGATIVRDKRIIAGGYNGSIAGGAHCIDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A+ +    G    GA  YVT  PC H      C + II+ GIR
Sbjct: 58  CYVIDGHCVRTIHAEMNAILQCAKFGVPTEGAEMYVTHFPCLH------CCKAIIQSGIR 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            V    D  +   +   L+  +Q G+ + ++
Sbjct: 112 AVYYAQDYKNHPYA---LELFAQAGVRLVQV 139


>gi|15964553|ref|NP_384906.1| putative deaminase protein [Sinorhizobium meliloti 1021]
 gi|307314743|ref|ZP_07594339.1| CMP/dCMP deaminase zinc-binding [Sinorhizobium meliloti BL225C]
 gi|307320037|ref|ZP_07599458.1| CMP/dCMP deaminase zinc-binding [Sinorhizobium meliloti AK83]
 gi|15073731|emb|CAC45372.1| Putative tRNA-specific adenosine deaminase [Sinorhizobium meliloti
           1021]
 gi|306894252|gb|EFN25017.1| CMP/dCMP deaminase zinc-binding [Sinorhizobium meliloti AK83]
 gi|306898967|gb|EFN29613.1| CMP/dCMP deaminase zinc-binding [Sinorhizobium meliloti BL225C]
          Length = 149

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 51/123 (41%), Gaps = 17/123 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
           ARFM AAL+ +R           +  ++V DG +I               HAE++A+  A
Sbjct: 5   ARFMQAALQEARKAAAR--GEVPIGAVVVLDGKMIAAAGNRTRELNDITAHAEIEAIRHA 62

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                 E   GA  YVTLEPC        CA  I    IRR+    +DP       G+++
Sbjct: 63  AAAVGDERLSGADLYVTLEPC------TMCAAAISFARIRRLYYGAEDPKGGAVDNGVRF 116

Query: 119 LSQ 121
            + 
Sbjct: 117 YAS 119


>gi|320334320|ref|YP_004171031.1| tRNA(Ile)-lysidine synthase [Deinococcus maricopensis DSM 21211]
 gi|319755609|gb|ADV67366.1| tRNA(Ile)-lysidine synthase [Deinococcus maricopensis DSM 21211]
          Length = 529

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 48/129 (37%), Gaps = 18/129 (13%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV-TAYGG---CPHAEVQ 58
           +  D   M  AL  +R   G       V  +I   DG V+ R   TA        HAE+ 
Sbjct: 379 ADLDHVAMGEALAAAREAFGNAE--VPVGAVITGPDGQVVARAANTARAHGDMTRHAELD 436

Query: 59  ALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL  A          G T YVTLEPC      P C    +E  + R+V    +P +   G
Sbjct: 437 ALRAAAATLGTAYLTGCTLYVTLEPC------PMCLGAALEARVSRIVFGARNPKLGALG 490

Query: 114 RGLQWLSQK 122
                L+  
Sbjct: 491 GVTDVLAYA 499


>gi|227824910|ref|ZP_03989742.1| riboflavin biosynthesis protein ribD [Acidaminococcus sp. D21]
 gi|226905409|gb|EEH91327.1| riboflavin biosynthesis protein ribD [Acidaminococcus sp. D21]
          Length = 240

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 86/239 (35%), Gaps = 26/239 (10%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA--- 202
           + ++  +   +  S +  I  A   +      + +          DAI+ G  T+ A   
Sbjct: 1   MTEKPFVVCHMLTSLNGKIDGAFFDNPAAGPGLDRTGKIRSGYHCDAIVFGAVTMEAFCE 60

Query: 203 ------------DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK--TALLAPVI-I 247
                       D P+       + ++   +++LDP  +L+     ++  T     +I +
Sbjct: 61  GKLNEAVLAGKKDLPKKDWVSPEVADNEGFQVVLDPLGRLAYHRPFLQRGTGPRQHIIEV 120

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLK--KLLTILVGR-GVTSLLVEGGAAVAHSFIN 304
           V+E          R+  ++ I      LK   +L  L    G++ + + GG     +F+ 
Sbjct: 121 VSEKVSGAYLSYLREVGVSYIVAGEDSLKGSVILQKLADLFGISRIALSGGGLTNGTFLR 180

Query: 305 SRLVDSIILYRSQIVIGEGGIPSP--LEEGYLEKN--FMCVRRDYFGSD-VCLEYIGKN 358
             L+D + L    +   E G  S   ++   L KN  F+    +    D + + Y   N
Sbjct: 181 EGLIDELSLVIVPVAEMEKGATSFEAMDGAPLLKNPAFILKGVEVLAKDALWIRYERVN 239


>gi|163735385|ref|ZP_02142819.1| cytosine deaminase [Roseobacter litoralis Och 149]
 gi|161391394|gb|EDQ15729.1| cytosine deaminase [Roseobacter litoralis Och 149]
          Length = 150

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 61/153 (39%), Gaps = 18/153 (11%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQ 58
           ++  D R +  A   ++   G       +  ++ + G V+ +G       G P  H E+ 
Sbjct: 4   MNDADIRLLRIAYDEAK--AGFDEGGCPIGSVLARGGEVVAQGRNQRVQKGDPIAHGEMD 61

Query: 59  ALEEAG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           AL +AG  +  R  T Y +L PC     +      II+ GI RVV+  +           
Sbjct: 62  ALRKAGRQKSYRDTTLYTSLSPCMMCTGT------IIQFGIPRVVIGENKNFGGNE---- 111

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            +L  KG+ V    + +    +  ++T + E  
Sbjct: 112 DFLRSKGVEVIVADDPDCIDLMQRFITEKPELW 144


>gi|329121024|ref|ZP_08249655.1| tRNA-specific adenosine deaminase [Dialister micraerophilus DSM
           19965]
 gi|327471186|gb|EGF16640.1| tRNA-specific adenosine deaminase [Dialister micraerophilus DSM
           19965]
          Length = 149

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 17/109 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
           D  +M+ A++ ++    + +  P +  +I    I+I               HAE+ A+++
Sbjct: 3   DKDYMTLAIQEAKKA-YMNNEMP-IGAIITYKDIIIANSYNECEKNKNIFDHAEILAIKK 60

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           A +        G T YVT+EPC      P CA  I+   I R+V    +
Sbjct: 61  ASKLLNTSRLTGCTLYVTIEPC------PMCAGAIMHSRIDRLVFGAFN 103


>gi|325289744|ref|YP_004265925.1| Guanine deaminase [Syntrophobotulus glycolicus DSM 8271]
 gi|324965145|gb|ADY55924.1| Guanine deaminase [Syntrophobotulus glycolicus DSM 8271]
          Length = 154

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 16/104 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA-- 63
           FM  A R ++  +      P    ++V++G VI               HAE+ A+ +A  
Sbjct: 4   FMQQAYREAKTGMTAGEGGP-FGAVVVREGKVIASAHNIVLLTQDSTAHAEIVAIRKAER 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                +  G   Y T  PC      P C   I+   I +V    
Sbjct: 63  LLGTHDLSGCELYTTSYPC------PMCLGAIMWARISKVYYGC 100


>gi|260495001|ref|ZP_05815130.1| ComE operon protein 2 [Fusobacterium sp. 3_1_33]
 gi|260197444|gb|EEW94962.1| ComE operon protein 2 [Fusobacterium sp. 3_1_33]
          Length = 161

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 52/148 (35%), Gaps = 33/148 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-------------TAYG 50
           ++D+ FM  A+  S         N  V   IV  D  ++G G                  
Sbjct: 7   NWDSYFMGIAILSSMRSK---DPNTQVGACIVNEDKRIVGVGYNGLPKGCDDKEFPWERD 63

Query: 51  GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           G           HAE+ A+  + +  +  T YV L PC        C + II+ GI+ +V
Sbjct: 64  GEFLNTKYPYVCHAELNAILNSIKSLKNCTIYVALFPCHE------CTKAIIQSGIKEIV 117

Query: 102 VCVDDP-DVRVSGRGLQWLSQKGIIVDR 128
              D   D   +    + L   G+   R
Sbjct: 118 YLSDKYTDTDSNRASKKMLDSAGVKYRR 145


>gi|27379891|ref|NP_771420.1| cytosine deaminase [Bradyrhizobium japonicum USDA 110]
 gi|27353044|dbj|BAC50045.1| bll4780 [Bradyrhizobium japonicum USDA 110]
          Length = 150

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 42/118 (35%), Gaps = 13/118 (11%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAE 56
           M + S+   FM  A+R +   +        +  ++ +D  +I RG            H E
Sbjct: 1   MAIESYHFDFMLEAIREAEASIAQGGL--PIGAVLTRDNQIIARGHNNRVQENNVILHGE 58

Query: 57  VQALEEAGEEARGATA-YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           +  L EAG      T  Y TL PCS       CA  +    ++ VV+           
Sbjct: 59  MSCLREAGAITFHDTIMYTTLSPCSM------CAGALALFKVKLVVIGESVTFPGSKD 110


>gi|170088388|ref|XP_001875417.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650617|gb|EDR14858.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 164

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 56/153 (36%), Gaps = 31/153 (20%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK------DGIVIGRGVTAY-GGCPHAEVQALEEA 63
           M  AL  +   +  T T   V C+I          ++I  G +    G  HAE  AL +A
Sbjct: 1   MRLALLEAAKCIP-TPTAFCVGCVITTRPPQSTSSVIISTGHSRELFGNTHAEANALSKA 59

Query: 64  G----EEARG------------------ATAYVTLEPCS-HYGRSPPCAQFIIECGIRRV 100
                ++ R                   +  Y TLEPCS       PC   +I   +RR 
Sbjct: 60  HTLSVDQLRALFPTLDPSELDINTILSQSDVYTTLEPCSIRTSGLAPCVAALIGAKVRRC 119

Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
            + V +P   V   G + L + G+ V  +   E
Sbjct: 120 FIGVAEPLDFVECEGARKLKEAGVEVVWLGGLE 152


>gi|325121723|gb|ADY81246.1| guanine deaminase (Guanase) [Acinetobacter calcoaceticus PHEA-2]
          Length = 145

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 25/114 (21%)

Query: 8   ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
            +F+  A+  +        G          ++VK+G +I  GV           HAE+ A
Sbjct: 5   EQFLRKAIELAYNNIEKG-GR-----PFGAVVVKNGEIIASGVNQILVTNDPTAHAELLA 58

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           +  A +        G + Y +  PC      P C   +   GI+ V     + D
Sbjct: 59  IRAASQVLGSANLEGCSVYASGHPC------PMCMAAMRLAGIKSVSYAYSNED 106


>gi|322692072|ref|YP_004221642.1| cytidine/deoxycytidine deaminase [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320456928|dbj|BAJ67550.1| putative cytidine/deoxycytidine deaminase [Bifidobacterium longum
           subsp. longum JCM 1217]
          Length = 149

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 56/153 (36%), Gaps = 24/153 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY--GGCP--HAEVQA 59
            +D   M  AL  +       + +  V  +++   G ++GRG       G P  HAE+ A
Sbjct: 2   EYDEA-MRCALELA--GQAAAAGDVPVGAVVLDAAGQIVGRGYNTREADGDPLAHAEIIA 58

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           + +A +          T  VTLEPC      P CA   I+  I  +     DP +   G 
Sbjct: 59  MRQAAQALGAWNLADCTLAVTLEPC------PMCAGACIQTHIGTIAFGAWDPKLGACGS 112

Query: 115 GLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
                    I     +   ++E E +  L  + 
Sbjct: 113 IWDIPRDPHIGHSPEVHGGVLEGECQSILTDFF 145


>gi|269838886|ref|YP_001949988.2| deoxycytidylate deaminase domain like protein [Ralstonia phage
           RSL1]
 gi|239793682|dbj|BAG41558.2| deoxycytidylate deaminase domain like protein [Ralstonia phage
           RSL1]
          Length = 145

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 50/152 (32%), Gaps = 45/152 (29%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG-------RGVT---------- 47
             D  +MS A   +     +      V C++ K   ++         G            
Sbjct: 2   DLDNFYMSIAHHAADQSHAIRRK---VGCVVAKGDRILSYAWNGMPAGFHNDCEHSVLTK 58

Query: 48  ------------AYGGCPHAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFI 92
                          G  HAEV A   L  AG    GAT Y+TL PC       PCA  I
Sbjct: 59  DPETGILQFQLLTKPGVTHAEVNAIGKLAAAGISCAGATLYLTLSPC------VPCANLI 112

Query: 93  IECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
              GI RVV      DV     G+  L+  GI
Sbjct: 113 QRSGIERVVYETQYRDVE----GINLLTGCGI 140


>gi|34541357|ref|NP_905836.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
           gingivalis W83]
 gi|34397674|gb|AAQ66735.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
           gingivalis W83]
          Length = 150

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 37/109 (33%), Gaps = 17/109 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
            M  A+R +   V           +IVKDG +I               HAEV  +  A +
Sbjct: 1   MMREAIRLADESVANGGG--PFGAVIVKDGEIIAATSNRVTLDNDPTAHAEVNCIRMACK 58

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
                +  G T Y + EPC      P C   I    I R+    +  D 
Sbjct: 59  RLGTFDLSGCTIYTSCEPC------PMCLGAIYWARIDRIFYGNNRQDA 101


>gi|73662478|ref|YP_301259.1| dCMP deaminase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|72494993|dbj|BAE18314.1| putative dCMP deaminase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 153

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 52/148 (35%), Gaps = 34/148 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M    ++  FM+ +   +      T    SV   IVKD  +I  G               
Sbjct: 1   MDRIKWEEYFMAQSHLLALRS---TCERLSVGATIVKDNRIIAGGYNGSVSGEVHCIDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G    GAT YVT  PC +      C + II+ GI 
Sbjct: 58  CLLEDGHCIRTIHAEMNALLQCAKQGVSTDGATIYVTHFPCLN------CTKSIIQSGID 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            +    D  +   +   L+ L Q GI  
Sbjct: 112 TIYYAEDYHNHTYA---LELLKQAGIEY 136


>gi|226310134|ref|YP_002770028.1| guanine deaminase [Brevibacillus brevis NBRC 100599]
 gi|226093082|dbj|BAH41524.1| guanine deaminase [Brevibacillus brevis NBRC 100599]
          Length = 156

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 17/130 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
             +M  A++ +  +V      P    L+VKDG V+GRG     T+     HAE+QA+ EA
Sbjct: 4   ETWMGQAVQIAFENVRDKVGGP-FGALVVKDGQVVGRGRNEVTTSNDPTAHAEIQAIREA 62

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                         Y + EPC      P C   I     R V       D    G   Q+
Sbjct: 63  CRHLETFQLNDCDLYTSCEPC------PMCLGAIYWARPRNVYYACTKEDAAHVGFDDQF 116

Query: 119 LSQKGIIVDR 128
           + ++ I++  
Sbjct: 117 IYEQ-IVLPH 125


>gi|315230719|ref|YP_004071155.1| dCMP deaminase [Thermococcus barophilus MP]
 gi|315183747|gb|ADT83932.1| dCMP deaminase [Thermococcus barophilus MP]
          Length = 181

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 50/146 (34%), Gaps = 32/146 (21%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
           D  FM  A   S      T     V  + VKDG ++  G                     
Sbjct: 23  DEYFMLIAKLVSLRA---TCPRLRVGAVAVKDGYILATGYNGAPRGMDHCIDVGCLIVDG 79

Query: 54  ------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                 HAE   +  A   G    GAT YVT  PC        C + ++  GI+ +V   
Sbjct: 80  HCHRAVHAEQNVIAMAARKGISLEGATLYVTHFPCD------TCFKLLVNAGIKEIVYEE 133

Query: 105 DDPDVRVSGRGLQWLSQKGIIVDRMM 130
             P+ + +   L+   +KG+I  R  
Sbjct: 134 MYPN-KATEILLKEAQEKGMIKIRQF 158


>gi|91218013|ref|ZP_01254965.1| deoxycytidylate deaminase [Psychroflexus torquis ATCC 700755]
 gi|91183871|gb|EAS70262.1| deoxycytidylate deaminase [Psychroflexus torquis ATCC 700755]
          Length = 143

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 56/150 (37%), Gaps = 38/150 (25%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
           FD  ++  A  + +           V  +IVKD ++I  G     G P            
Sbjct: 9   FDKAYLRMAREWGKLSHCQRK---QVGAIIVKDRMIISDGF---NGTPSGFNNACEDKEG 62

Query: 54  -------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A+     + + ++ AT Y+ L PC        C++ I + GI RVV  
Sbjct: 63  LTKWYVLHAEANAILKVAASTQSSKNATLYINLSPCKE------CSKLIHQAGIIRVVYQ 116

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
               D      GL +L + G+ +  +   E
Sbjct: 117 HRYKD----NAGLDFLEKAGVDLQHIENLE 142


>gi|320102361|ref|YP_004177952.1| tRNA-adenosine deaminase [Isosphaera pallida ATCC 43644]
 gi|319749643|gb|ADV61403.1| tRNA-adenosine deaminase [Isosphaera pallida ATCC 43644]
          Length = 185

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 46/129 (35%), Gaps = 18/129 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV----TAYGGCPHAEV 57
            +  D   M+ AL  +R  V L      V  +++   G ++ +      T      HAE 
Sbjct: 16  WTPTDYWAMTRALDLARAAVDL--GEVPVGAVVLDPLGRLLAQAHNLRETLEDPTAHAER 73

Query: 58  ----QALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
                A    G     G T YVTLEPC        CA  I+   + RVV   +DP     
Sbjct: 74  LVLTWAARGLGTWRLEGCTLYVTLEPC------VMCAGAIVLARVARVVYATNDPKAGAC 127

Query: 113 GRGLQWLSQ 121
               + L  
Sbjct: 128 SSLYRILDD 136


>gi|52841949|ref|YP_095748.1| deaminase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52629060|gb|AAU27801.1| deaminase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 141

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 25/147 (17%)

Query: 11  MSAALRFS--RWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAEVQALEEA 63
           M  A   +    + G       V  ++V KD  ++G G      ++    HAE++A+ +A
Sbjct: 1   MQLAYEQAVIARNEGEV----PVGAVLVSKDNQLLGVGRNVIEKSHDPSDHAEIRAIRQA 56

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ- 117
             +         T YVTLEPC        CA  ++   I+R+V    D     +G     
Sbjct: 57  SRKLNNHRLLDTTLYVTLEPC------VMCAGLMVHARIKRLVFATRDFKTGAAGSMFNV 110

Query: 118 --WLSQKGIIVDRMMESEGKIFLHAYL 142
              L+   +I + +M++E    L  + 
Sbjct: 111 LHALNHSVLIDEGIMQAECSQLLSDFF 137


>gi|237736005|ref|ZP_04566486.1| deoxycytidylate deaminase [Fusobacterium mortiferum ATCC 9817]
 gi|229421886|gb|EEO36933.1| deoxycytidylate deaminase [Fusobacterium mortiferum ATCC 9817]
          Length = 163

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 53/149 (35%), Gaps = 33/149 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGV-------------TAYG 50
            +D  FM  AL   +        N  V   IV +   ++G G                  
Sbjct: 8   EWDEYFMGVALLSGKRSK---DPNTQVGACIVNEEKKIVGVGYNGLPIGCSDDEYPWERE 64

Query: 51  GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           G           HAE+ A+  + +  +  T YV L PC        C++ II+ GIR +V
Sbjct: 65  GEFLETKYPFVCHAELNAILNSTKSLKNCTIYVALFPCHE------CSKAIIQSGIRELV 118

Query: 102 VCVDDPD-VRVSGRGLQWLSQKGIIVDRM 129
              D  D    +    + L+  G+   ++
Sbjct: 119 YLSDKYDGTESNIASKKMLTSAGVKFRQL 147


>gi|323704821|ref|ZP_08116398.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535747|gb|EGB25521.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 172

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 45/125 (36%), Gaps = 40/125 (32%)

Query: 31  VACLIVKDGIVIGRGV---------------------------TAYGGCPHAEVQALEEA 63
           V  +IVKD  +I  G                                   HAE  A+ +A
Sbjct: 51  VGAVIVKDKHIISTGYNGAPTGLKHCEEVGCMRESLNIPSGERHELCRGTHAEQNAIIQA 110

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G   + AT YV+  PCS       CA+ II  GI+RVV   D PD        ++L 
Sbjct: 111 ALNGVSTKDATIYVSASPCSM------CAKMIINAGIKRVVYEGDYPD----NLSFEYLK 160

Query: 121 QKGII 125
           +  + 
Sbjct: 161 EASVE 165


>gi|331242125|ref|XP_003333709.1| CMP/dCMP deaminase family protein [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309312699|gb|EFP89290.1| CMP/dCMP deaminase family protein [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 169

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 57/149 (38%), Gaps = 29/149 (19%)

Query: 11  MSAALRFSRWHVGLTSTNP---SVACLIVK--DGIVIGRGVTAY-GGCPHAEVQALEEAG 64
           M  A+  +R    L    P    V CL+ K   G V+  G +    G  HAE  A+ +  
Sbjct: 13  MRKAIALAR----LCKPIPTAFCVGCLMTKTGTGEVVSEGYSRELEGNTHAEQCAIMKLS 68

Query: 65  E--------EARGATAYVTLEPCS-HYGRSPPCAQFII--------ECGIRRVVVCVDDP 107
                     A     Y T+EPCS     + PCA  I+           I+ + + V +P
Sbjct: 69  PLDGPSSSMLAGDLDLYTTMEPCSIRLSGNKPCADLILQFNRSHHPHLRIKNIFLGVVEP 128

Query: 108 DVRVSGRGLQWLSQKG--IIVDRMMESEG 134
           D  V+  G++ L   G  II     + E 
Sbjct: 129 DDFVNCEGVKKLQDSGLTIIQVVGFKEEC 157


>gi|296418533|ref|XP_002838885.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634868|emb|CAZ83076.1| unnamed protein product [Tuber melanosporum]
          Length = 215

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 8/121 (6%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVT-AYGGCPHAEVQALE---EAGE 65
           M+ AL  +R    + S    V  +I    G ++  G +  + G  HAE  A++    +  
Sbjct: 45  MTQALAIARKSTYIPSA-FCVGAIIATPSGDILSTGYSREHPGNTHAEQVAIDKLLSSSS 103

Query: 66  EARGATAYVTLEPCS-HYGRSPPCAQFIIECG-IRRVVVCVDDPDVRVSGRGLQWLSQKG 123
               A  Y T+EPCS     +  C   I+EC  IRRV   V +P   V   G   L   G
Sbjct: 104 TPEEAVVYTTMEPCSKRLSGNKSCVDRILECAWIRRVYAGVMEPVDFVENSGKAKLEAAG 163

Query: 124 I 124
           +
Sbjct: 164 V 164


>gi|169829293|ref|YP_001699451.1| ComE operon protein 2 [Lysinibacillus sphaericus C3-41]
 gi|168993781|gb|ACA41321.1| ComE operon protein 2 [Lysinibacillus sphaericus C3-41]
          Length = 189

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 56/151 (37%), Gaps = 34/151 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGG 51
           M   ++D  FM+ +   +      T T  +V   +V+D  +I  G              G
Sbjct: 1   MERITWDQFFMAQSHLLALRS---TCTRLAVGATVVRDKRIIAGGYNGSITGDEHCIENG 57

Query: 52  ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G   +GA  YVT  PC       PC + II+ GI 
Sbjct: 58  CYVVDNHCVRTVHAEMNALLQCAKYGTPTKGADLYVTHFPCL------PCTKSIIQAGIE 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           RV    D  +   +    +   + G+ V  +
Sbjct: 112 RVYYATDYKNNPYAQ---ELFEKAGVTVVHV 139


>gi|217071124|gb|ACJ83922.1| unknown [Medicago truncatula]
          Length = 186

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 40/116 (34%), Gaps = 16/116 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           V   D +F+  A+  +   V      P    +IV +  V+               HAEV 
Sbjct: 27  VQDRDHKFLRRAVEEAYKGVDCGDGGP-FGAVIVHNDEVVASCHNMVLNFTDPTAHAEVT 85

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           A+ EA ++ +         Y + EPC      P C   I    I+R+V        
Sbjct: 86  AIREACKKLKQIELSDCEIYASCEPC------PMCFGAIHLSRIKRLVYGAKAEAA 135


>gi|313107393|ref|ZP_07793584.1| putative deaminase [Pseudomonas aeruginosa 39016]
 gi|310880086|gb|EFQ38680.1| putative deaminase [Pseudomonas aeruginosa 39016]
          Length = 151

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 23/114 (20%)

Query: 7   DARFMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
           D  FM  A+  +R      G          ++V+DG V+ RGV      +    HAE+QA
Sbjct: 3   DETFMREAIALARANVEAGGR-----PFGAVLVRDGRVLARGVNQIHETHDPSAHAELQA 57

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           + +A +        G   Y +  PC      P C   +  CGI+       + D
Sbjct: 58  IRQASQALGSPRLDGCVIYASGHPC------PMCLAAMHLCGIQAAWFAYSNED 105


>gi|15888031|ref|NP_353712.1| cytidine and deoxycytidylate deaminase [Agrobacterium tumefaciens
           str. C58]
 gi|15155649|gb|AAK86497.1| cytidine and deoxycytidylate deaminase [Agrobacterium tumefaciens
           str. C58]
          Length = 152

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 53/148 (35%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA- 63
            FM  AL  +R   G     P +  ++V DG VI R             HAE+  +  A 
Sbjct: 6   HFMELALVEARSA-GERDEVP-IGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMAC 63

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW- 118
                E   GA  YVTLEPC        CA  I    IRR+     DP       G+++ 
Sbjct: 64  EALGQERLPGADLYVTLEPC------TMCAAAISFARIRRLYYGAQDPKGGAVESGVRFF 117

Query: 119 ----LSQKGIIVDRMMESEGKIFLHAYL 142
                     +   + ESE    L  + 
Sbjct: 118 SQPTCHHAPDVYSGLAESESAEILRQFF 145


>gi|225017541|ref|ZP_03706733.1| hypothetical protein CLOSTMETH_01468 [Clostridium methylpentosum
           DSM 5476]
 gi|224949691|gb|EEG30900.1| hypothetical protein CLOSTMETH_01468 [Clostridium methylpentosum
           DSM 5476]
          Length = 145

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 52/142 (36%), Gaps = 33/142 (23%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV-------------TAYGGCP--- 53
           M  AL  ++        N  V   IV +D  ++  G               +  G     
Sbjct: 1   MGIALLSAQRSK---DPNTQVGACIVGQDNKILSLGYNGMPIGCSDDELPWSNQGEALDT 57

Query: 54  ------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
                 HAE+ A+  +G++  GA  Y TL PC+       CA+ II+ GI+ VV C D  
Sbjct: 58  KYLFVCHAELNAILNSGKDLSGAKLYTTLFPCNE------CAKAIIQSGIKEVVYCSDKY 111

Query: 108 -DVRVSGRGLQWLSQKGIIVDR 128
            D   +    +     G+    
Sbjct: 112 ADTESTIASKKMFGMAGVCYRG 133


>gi|170749290|ref|YP_001755550.1| deaminase-reductase domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655812|gb|ACB24867.1| bifunctional deaminase-reductase domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 244

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 78/215 (36%), Gaps = 22/215 (10%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV------- 200
           +R ++   +  S D  I +       +       +VH      DA + G  T+       
Sbjct: 5   ERPYVICHMTSSVDGRIKVR--RWKTLDADSHYERVHGELKG-DAWMCGRVTMQGYADSA 61

Query: 201 ------LADDPELTCRLNGLQEHS-PMRII-LDPHFKLSLDSKIIKTALLAPVIIVTEND 252
                 +ADD     R + +     P   + LD   +L   ++         V+++TE+ 
Sbjct: 62  DPLPEPVADDGVPVPREDHVARRDAPGYAVALDARGRLDWGARDAIEGDHV-VVVLTESV 120

Query: 253 DPVLALAFRKKNINIIYCDCR--DLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVD 309
                 A R    + ++   R  D       L    G+  LLVEGG  +  S + + L+D
Sbjct: 121 PDSHLRALRAGGQSYLFAGDRAVDFPLAAAKLRALFGIERLLVEGGGHINGSMLKAGLID 180

Query: 310 SIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
            + L     V G  G P+  + G  E + M  RR 
Sbjct: 181 ELSLLLVPAVDGLSGTPAVFDIGGEEADTMGSRRK 215


>gi|321260564|ref|XP_003195002.1| tRNA specific adenosine deaminase [Cryptococcus gattii WM276]
 gi|317461474|gb|ADV23215.1| tRNA specific adenosine deaminase, putative [Cryptococcus gattii
           WM276]
          Length = 239

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 78/253 (30%), Gaps = 37/253 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE----E 62
           M  AL  +     L++    V C+ VK G  I R             HAE++A++     
Sbjct: 1   MREALIMAEEA--LSNDEVPVGCVFVKGGQAIARARNRTNEWRNATLHAELEAIDHLLPS 58

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ- 121
                   T YVT+EPC        CA  + + GI RVV    +      G  +   +  
Sbjct: 59  HPAPLSTITLYVTVEPC------VMCASALRQVGIGRVVYGCGNDRFGGCGSVIPVNNSP 112

Query: 122 ------KGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
                   + V      E  + L  +   Q         K        I      +    
Sbjct: 113 RLDSHPAYVAVGGFYREEAIMLLRRFYMSQNPNAPKPKKKATRVLKTDIPPPPSRNTTPQ 172

Query: 176 GFISKNQVHLLRA---QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
                +     R     +DA   G  T     P L    +  ++ S  R++ D      +
Sbjct: 173 SSRPSSTAPSHRRPIPSADASTTGTST-----PAL----SEGEKKSQERVMRDDGL--PI 221

Query: 233 DSKIIKTALLAPV 245
            S ++ T    P+
Sbjct: 222 GSTMVSTPSETPL 234


>gi|326553676|gb|ADZ88315.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           melitensis M5-90]
          Length = 142

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 52/146 (35%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG-- 64
           M  AL  +    G     P +  +IV+DG +I R             HAE+  + +AG  
Sbjct: 1   MDIALEEAH-AAGERGEVP-IGAVIVRDGEIIARAGNRTREFNDVTAHAEILTIRQAGEM 58

Query: 65  ---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW--- 118
              E       YVTLEPC+       CA  I    IRR+     DP       G ++   
Sbjct: 59  LGSERLIDCDLYVTLEPCAM------CAAAISFARIRRLYYGASDPKGGGIEHGGRFYTQ 112

Query: 119 --LSQKGIIVDRMMESEGKIFLHAYL 142
                   I     E++ +  L  + 
Sbjct: 113 LTCHHAPEIYPGFCEADARKILKDFF 138


>gi|225378688|ref|ZP_03755909.1| hypothetical protein ROSEINA2194_04358 [Roseburia inulinivorans DSM
           16841]
 gi|225209525|gb|EEG91879.1| hypothetical protein ROSEINA2194_04358 [Roseburia inulinivorans DSM
           16841]
          Length = 161

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 55/148 (37%), Gaps = 34/148 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV-------------TAYG 50
           S+D  FM  A+      +     N  V   IV  D  ++  G                  
Sbjct: 10  SWDEYFMGVAM---LTGMRSKDPNTQVGACIVSADHKILSMGYNGLPTGCSDDEFPWGRE 66

Query: 51  GCP---------HAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           G P         H+E+ A+    G    G+T YV+L PC+       CA+ II+ GI+R+
Sbjct: 67  GAPLENKYLFTTHSELNAILNYRGGSLEGSTIYVSLFPCNE------CAKAIIQAGIKRI 120

Query: 101 VVCVDDPD-VRVSGRGLQWLSQKGIIVD 127
           V   D  D         + L   G+++ 
Sbjct: 121 VYDSDKYDGTPSVVASKRMLKAAGVVMQ 148


>gi|123386433|ref|XP_001299274.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121880079|gb|EAX86344.1| hypothetical protein TVAG_069050 [Trichomonas vaginalis G3]
          Length = 377

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 60/157 (38%), Gaps = 13/157 (8%)

Query: 220 MRIIL-DPHFKLSLDSKIIKTALLAPVII---VTENDDPVLALAFRKKNINIIYC--DCR 273
           + ++  DP  KL+     ++  +  P  I   +TE   P      RK  I+ I    +  
Sbjct: 88  LYVVAADPSGKLAWQKNTLQYDVRPPAHIIEALTEKATPQYKNYLRKHQISYIVAGKEQL 147

Query: 274 DLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI-----PS 327
           D K L+  L  +  +  L VEGG  +  SF+N+ +VD + +  +    G          S
Sbjct: 148 DWKLLVMKLKEKFNINVLAVEGGGIINWSFLNAGIVDELSICLTAAADGSNDTITLFEKS 207

Query: 328 PLEEGYLEKNFMCVRRDYFGS-DVCLEYIGKNLCLQE 363
           P         F     D  G+  + + Y  K    +E
Sbjct: 208 PYFPKGSPVEFELKAVDKIGAGGLWIRYTPKGASKRE 244


>gi|260061092|ref|YP_003194172.1| deoxycytidylate deaminase [Robiginitalea biformata HTCC2501]
 gi|88785224|gb|EAR16393.1| deoxycytidylate deaminase [Robiginitalea biformata HTCC2501]
          Length = 150

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 58/150 (38%), Gaps = 38/150 (25%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
               +D  ++  A   + W          V  +IV++ ++I  G     G P        
Sbjct: 5   KQEKYDKAYLRMA---NEWGKLSYCRRKQVGAIIVRERMIISDGY---NGTPSGFENFCE 58

Query: 54  -----------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                      HAE  A+     + +   GAT Y+TL PC        C++ I +CGIRR
Sbjct: 59  DEEGYTKWYVLHAEANAISKVASSTQSCEGATLYITLSPCRE------CSKLIHQCGIRR 112

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           VV             GLQ+L++ G+ +  +
Sbjct: 113 VVY----QKAYKDDSGLQFLARAGVELVHL 138


>gi|261880583|ref|ZP_06007010.1| tRNA-specific adenosine deaminase [Prevotella bergensis DSM 17361]
 gi|270332702|gb|EFA43488.1| tRNA-specific adenosine deaminase [Prevotella bergensis DSM 17361]
          Length = 151

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 52/150 (34%), Gaps = 17/150 (11%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEV 57
                D R+M  A++              +  ++V    +I R      T      HAE+
Sbjct: 6   TQEQKDERYMRMAIQ--EAEAAFEEGEIPIGAIVVCRDRIISRAHNQTETLNDVTAHAEM 63

Query: 58  QALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+  A     G+     T YVT+EPC        CA  I    I R+V  V +      
Sbjct: 64  LAITAAANTMGGKYLPDCTLYVTVEPC------VMCAGAIGWSQIGRIVYGVGEEKRGYK 117

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
                 L  K  +   +++ E K  + ++ 
Sbjct: 118 RYAPDALHPKTTVTSGVLQEECKALMISFF 147


>gi|323454898|gb|EGB10767.1| hypothetical protein AURANDRAFT_22290 [Aureococcus anophagefferens]
          Length = 172

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 49/148 (33%), Gaps = 21/148 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIV-IGRGVTAYG----GCPHAEVQALEEA-- 63
           M  AL  +   V      P V C+ V D  V I               HAE+ A++ A  
Sbjct: 1   MRRALELAEDAVAEQGEVP-VGCVFVNDNNVEIASAANETNEAMCATRHAELVAIDGALK 59

Query: 64  GEEARG-------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
              ARG          YVT EPC        CA  + + GI +      +      G  L
Sbjct: 60  HSAARGQPLDWTRCALYVTCEPCIM------CASALSQLGIAKCYFGCRNDKFGGCGSIL 113

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTR 144
                   IV+ + E+E       +  R
Sbjct: 114 SLHEGNFDIVEGLREAEAVDLFRRFYDR 141


>gi|257463951|ref|ZP_05628336.1| deoxycytidylate deaminase [Fusobacterium sp. D12]
 gi|317061475|ref|ZP_07925960.1| deoxycytidylate deaminase [Fusobacterium sp. D12]
 gi|313687151|gb|EFS23986.1| deoxycytidylate deaminase [Fusobacterium sp. D12]
          Length = 160

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 58/158 (36%), Gaps = 33/158 (20%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
           ++D  FM  AL  +         N  V   IV  D  +IG G                  
Sbjct: 8   TWDEYFMGVALLSAMRSK---DPNTQVGACIVSPDKKIIGLGYNGLPKGCEDDEFPWERE 64

Query: 47  -----TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                T Y    HAE+ A+  + +  +  + YV L PC        C++ II+ GIR +V
Sbjct: 65  GEFLETKYPYVCHAELNAILNSTQSLKNCSIYVALFPCHE------CSKAIIQSGIREIV 118

Query: 102 VCVDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFL 138
              D      S     + L   G+   R+  S  +++L
Sbjct: 119 YLSDKYAETESNLASKRMLDAAGVTYRRLENSCQELYL 156


>gi|309812017|ref|ZP_07705783.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Dermacoccus sp. Ellin185]
 gi|308434075|gb|EFP57941.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Dermacoccus sp. Ellin185]
          Length = 159

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 57/148 (38%), Gaps = 23/148 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY--GGCP--HAEVQALEEA- 63
           +M  AL  +R  VG     P V  L+V  DG VIG G       G P  HAE+ A+  A 
Sbjct: 16  WMGRALELARE-VGAAGDVP-VGALVVDPDGEVIGVGANLREVDGDPTGHAEIVAMRRAA 73

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
               G    G T  VTLEPC        CA   ++  + R+V+   D      G     +
Sbjct: 74  ASRGGWRLDGCTLVVTLEPCLM------CAGAAVQARLPRIVLGAWDRKAGACGGLWDVV 127

Query: 120 S-----QKGIIVDRMMESEGKIFLHAYL 142
                  +  +V  + E E    L  + 
Sbjct: 128 RDSRSTHRIEVVGGIREDECSAVLKEFF 155


>gi|218891523|ref|YP_002440390.1| putative deaminase [Pseudomonas aeruginosa LESB58]
 gi|218771749|emb|CAW27523.1| probable deaminase [Pseudomonas aeruginosa LESB58]
          Length = 151

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 23/114 (20%)

Query: 7   DARFMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
           D  FM  A+  +R      G          ++V+DG V+ RGV      +    HAE+QA
Sbjct: 3   DEIFMREAIALARANVEAGGR-----PFGAVLVRDGRVLARGVNQIHETHDPSAHAELQA 57

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           + +A +        G   Y +  PC      P C   +  CGI+       + D
Sbjct: 58  IRQASQALGSPRLDGCVIYASGHPC------PMCLAAMHLCGIQAAWFAYSNED 105


>gi|254459431|ref|ZP_05072850.1| guanine deaminase [Campylobacterales bacterium GD 1]
 gi|207083841|gb|EDZ61134.1| guanine deaminase [Campylobacterales bacterium GD 1]
          Length = 152

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 37/110 (33%), Gaps = 16/110 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
           ++M  A   +   +      P    +IVKD  +I +             HAEV A+ +A 
Sbjct: 3   KWMKIAYDEATEGMLANDGGP-FGAVIVKDDKIISQAHNQVLKSNDPTAHAEVNAIRKAS 61

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           E     +  G   Y +  PC      P C   I    I  V     + D 
Sbjct: 62  EVLETFDLSGCVLYTSCMPC------PMCLGAIFWARIETVYYSATEEDA 105


>gi|115713119|ref|XP_781669.2| PREDICTED: similar to DEADC1 protein, partial [Strongylocentrotus
          purpuratus]
          Length = 104

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 17/95 (17%)

Query: 5  SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
          ++D ++M  A+  ++  +G       V CL+V +  +IG G  A         HAE+ AL
Sbjct: 7  AYDEKWMKEAVNMAKQALGR--GEVPVGCLLVYEDQIIGTGGNAANETKNATRHAEILAL 64

Query: 61 EEA-----------GEEARGATAYVTLEPCSHYGR 84
          EEA           GE       +VT+EPC     
Sbjct: 65 EEAMRWCDDKQLERGELFSQTKLFVTVEPCIMCAG 99


>gi|307328842|ref|ZP_07608012.1| CMP/dCMP deaminase zinc-binding [Streptomyces violaceusniger Tu
           4113]
 gi|306885507|gb|EFN16523.1| CMP/dCMP deaminase zinc-binding [Streptomyces violaceusniger Tu
           4113]
          Length = 166

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 45/122 (36%), Gaps = 18/122 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----CPHAEVQALEEA-- 63
           M  AL  +      T   P V  +++  DG V+GRG            HAEV AL  A  
Sbjct: 25  MRLALEEAVRA-PETGDVP-VGAVVLGPDGSVLGRGRNEREAHGDPTAHAEVLALRAAAH 82

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G    G T  VTLEPC        CA  I+   + R+V    D      G     + 
Sbjct: 83  HLGGWRLTGCTLVVTLEPC------TMCAGAIVLSRLNRLVYGAVDEKAGAVGSLWDVVR 136

Query: 121 QK 122
            +
Sbjct: 137 DR 138


>gi|226324153|ref|ZP_03799671.1| hypothetical protein COPCOM_01931 [Coprococcus comes ATCC 27758]
 gi|225207702|gb|EEG90056.1| hypothetical protein COPCOM_01931 [Coprococcus comes ATCC 27758]
          Length = 67

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 5  SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
          + D ++M  A+R ++    +      + C+IV  G +IGRG     T      HAE+ A+
Sbjct: 6  TEDEKYMKEAIRQAKKAWKI--EEVPIGCVIVYQGKIIGRGYNRRTTDKNPLAHAEISAI 63

Query: 61 EE 62
          ++
Sbjct: 64 KK 65


>gi|302557648|ref|ZP_07309990.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase (Riboflavin
           biosynthesis protein RibD) [Streptomyces griseoflavus
           Tu4000]
 gi|302475266|gb|EFL38359.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase (Riboflavin
           biosynthesis protein RibD) [Streptomyces griseoflavus
           Tu4000]
          Length = 139

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 3/99 (3%)

Query: 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD---CRDLKKLLT 280
           +     L     +  + L+  +++      P    A       ++        D  +++ 
Sbjct: 2   VTAGLDLDFSLPLFTSPLVPTLVLTGAGAAPDRVAAAEATGARVVRAGEGAGVDPARVVR 61

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
            L   G T LL EGG  +    + + ++D + L  S ++
Sbjct: 62  ALAELGHTRLLTEGGPRLLGQLVAAGVLDELCLTVSPML 100


>gi|299535731|ref|ZP_07049052.1| ComE operon protein 2 [Lysinibacillus fusiformis ZC1]
 gi|298728931|gb|EFI69485.1| ComE operon protein 2 [Lysinibacillus fusiformis ZC1]
          Length = 189

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 59/160 (36%), Gaps = 34/160 (21%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
           M   ++D  FM+ +   +      T T  +V   +V+D  +I  G               
Sbjct: 1   MERITWDQFFMAQSHLLALRS---TCTRLAVGATVVRDKRIIAGGYNGSITGDEHCIEKG 57

Query: 47  -----TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G   +GA  YVT  PC       PC + II+ GI 
Sbjct: 58  CYVVDNHCVRTVHAEMNALLQCAKYGTPTKGADLYVTHFPCL------PCTKSIIQAGIE 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138
           RV    D  +   +    +  ++ G+ V  +   E KI  
Sbjct: 112 RVYYATDYKNNPYAQ---ELFAKAGVEVVHVPFDERKIDF 148


>gi|315122181|ref|YP_004062670.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495583|gb|ADR52182.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 150

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 47/122 (38%), Gaps = 17/122 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE--- 62
           FMS AL  +     L +  P V  + V +  +IGR             HAE+ A+     
Sbjct: 7   FMSLALEEALNAS-LRNEIP-VGAVAVLNNKIIGRAGNRNRELKDVTAHAEILAIRMSCQ 64

Query: 63  --AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             + E   G   YVTLEPC        CA  I    IRR+     +P       G+++ +
Sbjct: 65  TLSQETLPGVDLYVTLEPC------TMCAAAISFARIRRLYYGASNPKGGAIENGIEFYT 118

Query: 121 QK 122
             
Sbjct: 119 LA 120


>gi|212638664|ref|YP_002315184.1| Late competence protein ComEB [Anoxybacillus flavithermus WK1]
 gi|212560144|gb|ACJ33199.1| Late competence protein ComEB (DNA binding and uptake)
           [Anoxybacillus flavithermus WK1]
          Length = 155

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 55/151 (36%), Gaps = 34/151 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------ 53
           M   ++D  FM+ +   +      T T  +V   IV+D  +I  G      G        
Sbjct: 1   MERITWDQYFMAQSHLLALRS---TCTRLAVGATIVRDKRIIAGGYNGSIAGGAHCIDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A+ +    G    GA  YVT  PC        C + II+ GI+
Sbjct: 58  CYVIDNHCVRTIHAEMNAILQCAKFGVPTEGAEIYVTHFPCLQ------CCKAIIQSGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            V    D  +   +   LQ   Q G+ V  +
Sbjct: 112 AVYYANDYKNHPFA---LQLFEQAGVTVKHV 139


>gi|313205464|ref|YP_004044121.1| cmp/dcmp deaminase zinc-binding protein [Paludibacter
           propionicigenes WB4]
 gi|312444780|gb|ADQ81136.1| CMP/dCMP deaminase zinc-binding protein [Paludibacter
           propionicigenes WB4]
          Length = 141

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 55/149 (36%), Gaps = 38/149 (25%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
            D R+M  A  ++            V  L+VK+ ++I  G     G P            
Sbjct: 8   LDNRYMRMARIWAENSYCERRK---VGALLVKNQMIISDGY---NGTPSGFENKCEDENN 61

Query: 54  -------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A   +  +   +  AT YVT  PC        CA+ II+ GI+RVV  
Sbjct: 62  VSKPYVLHAEANAISKIARSHNSSDNATLYVTASPCIE------CAKLIIQAGIKRVVYG 115

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
                +     G++ L +  I V  + E 
Sbjct: 116 EKYRIM----DGVELLERANIEVLFLEEE 140


>gi|227549638|ref|ZP_03979687.1| nucleoside deaminase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078294|gb|EEI16257.1| nucleoside deaminase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 177

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 56/158 (35%), Gaps = 29/158 (18%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTST-NPSVACLIVKD-GIVIGRGVTAYGG----CPH 54
           MP++  D R M+ AL  +R     T   +  V  +I    G  +G GV           H
Sbjct: 2   MPLA--DRR-MARALEVAR----TTPPGDVPVGAVIYDALGREVGHGVNRREASGDPTAH 54

Query: 55  AEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AEV+AL  A          G    VTLEPC        CA  I+   +R +V    +P  
Sbjct: 55  AEVEALRAAARTLGAWRLDGCELVVTLEPC------TMCAGAILGARVRSLVFGAFEPKT 108

Query: 110 RVSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
              G     L          +   + E+E    L  + 
Sbjct: 109 GAVGSLFDALRDPRHLHIVEVRAGVREAECAALLTEFF 146


>gi|315924779|ref|ZP_07920996.1| tRNA-specific adenosine deaminase [Pseudoramibacter alactolyticus
           ATCC 23263]
 gi|315621678|gb|EFV01642.1| tRNA-specific adenosine deaminase [Pseudoramibacter alactolyticus
           ATCC 23263]
          Length = 164

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 40/121 (33%), Gaps = 17/121 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEAGE 65
           +M  AL   R    L +    V  ++V  G V+     R  T      HAE+  +  A +
Sbjct: 19  WMRLALDEGRQA--LAAGEFPVGAVVVCGGQVVAADHNRKETLQDPTAHAELLVIRAAAQ 76

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                     T YVT EPC      P C   +I+  + ++V    +              
Sbjct: 77  RLGRWRLDDCTLYVTAEPC------PMCMGAVIQARLAKLVYGAAEKRFGAVETTADLGR 130

Query: 121 Q 121
            
Sbjct: 131 H 131


>gi|254563600|ref|YP_003070695.1| deaminase reductase domain-containing protein [Methylobacterium
           extorquens DM4]
 gi|254270878|emb|CAX26883.1| putative deaminase reductase domain-containing protein
           [Methylobacterium extorquens DM4]
          Length = 238

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTE---NDDPVLALAFRKKNINIIYCDCRDLKKL 278
           + LD    +   ++         VI++T    +DD +  L    ++  I      D    
Sbjct: 90  VALDARGAMDWGAR--NDIEGDHVIVLTTGQASDDRLRRLKAGGQSYIIAGEREVDFALA 147

Query: 279 LTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
           L  L    G+  LLVEGG  +  S + + LVD + L  +  V G  G P+  +    E +
Sbjct: 148 LAKLKRLFGIERLLVEGGGRINGSMLKAGLVDELSLLLAPAVDGVLGTPALFDFEGGEGD 207

Query: 338 FMCVRRD 344
            M  RR 
Sbjct: 208 SMGSRRR 214


>gi|237743385|ref|ZP_04573866.1| deoxycytidylate deaminase [Fusobacterium sp. 7_1]
 gi|229433164|gb|EEO43376.1| deoxycytidylate deaminase [Fusobacterium sp. 7_1]
          Length = 161

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 52/148 (35%), Gaps = 33/148 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-------------TAYG 50
           ++D+ FM  A+  S         N  V   IV  D  ++G G                  
Sbjct: 7   NWDSYFMGVAILSSMRSK---DPNTQVGACIVNEDKRIVGVGYNGLPKGCDDKEFPWERD 63

Query: 51  GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           G           HAE+ A+  + +  +  T YV L PC        C + II+ GI+ +V
Sbjct: 64  GEFLNTKYPYVCHAELNAILNSIKSLKNCTIYVALFPCHE------CTKAIIQSGIKEIV 117

Query: 102 VCVDDP-DVRVSGRGLQWLSQKGIIVDR 128
              D   D   +    + L   G+   R
Sbjct: 118 YLSDKYTDTDSNRASKKMLDSAGVKYRR 145


>gi|15597695|ref|NP_251189.1| deaminase [Pseudomonas aeruginosa PAO1]
 gi|296389082|ref|ZP_06878557.1| putative deaminase [Pseudomonas aeruginosa PAb1]
 gi|9948552|gb|AAG05887.1|AE004677_4 probable deaminase [Pseudomonas aeruginosa PAO1]
          Length = 151

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 23/114 (20%)

Query: 7   DARFMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
           D  FM  A+  +R      G          ++V+DG V+ RGV      +    HAE+QA
Sbjct: 3   DETFMREAIALARANVEAGGR-----PFGAVLVRDGRVLARGVNQIHETHDPSAHAELQA 57

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           + +A +        G   Y +  PC      P C   +  CGI+       + D
Sbjct: 58  IRQASQALGSPRLDGCVIYASGHPC------PMCLAAMHLCGIQAAWFAYSNED 105


>gi|313146154|ref|ZP_07808347.1| cytidine/deoxycytidylate deaminase [Bacteroides fragilis 3_1_12]
 gi|313134921|gb|EFR52281.1| cytidine/deoxycytidylate deaminase [Bacteroides fragilis 3_1_12]
          Length = 155

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 17/113 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
              M  A+  SR +V           +I KDG ++  GV           HAEV A+  A
Sbjct: 4   EELMRKAIELSRENVANGGG--PFGAVIAKDGEIVVTGVNRVTASCDPTAHAEVTAIRAA 61

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
             +       G   Y + EPC      P C   I    + ++    +  D + 
Sbjct: 62  ASKLGTFNLSGYEIYTSCEPC------PMCLGAIYWARLDKMYYGNNKTDAKN 108


>gi|91773922|ref|YP_566614.1| CMP/dCMP deaminase, zinc-binding [Methanococcoides burtonii DSM
           6242]
 gi|91712937|gb|ABE52864.1| dCMP deaminase [Methanococcoides burtonii DSM 6242]
          Length = 151

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 52/159 (32%), Gaps = 43/159 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S D  F+  A   S+    L +    V  +IV++  ++  G                   
Sbjct: 6   SIDEYFLEIASVVSKRSTCLRNK---VGAVIVRNKRILSTGYNGAPSNMEHCLEIGCIRQ 62

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G    GAT Y T +PC        CA+ II 
Sbjct: 63  QNNIASGTRHEKCRAVHAEQNAIIQAALHGVSIGGATVYCTHQPCI------LCAKMIIN 116

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
             I +VV     PD        ++    G+ +  +   E
Sbjct: 117 SNITKVVYSTSYPDT----DTKEFFDAAGVEMVYIPPQE 151


>gi|282859465|ref|ZP_06268570.1| guanine deaminase [Prevotella bivia JCVIHMP010]
 gi|282587693|gb|EFB92893.1| guanine deaminase [Prevotella bivia JCVIHMP010]
          Length = 168

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 36/115 (31%), Gaps = 25/115 (21%)

Query: 8   ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
              M  A+  S    R   G          +I ++G ++  G            HAEV  
Sbjct: 17  EELMRRAIELSINSVRNGGG------PFGAVIARNGEIVAEGSNKVTIDNDPTAHAEVST 70

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           +  A +     +  G   Y + EPC      P C   I    + ++    D  D 
Sbjct: 71  IRMACKKLDSFDLSGCEIYTSCEPC------PMCLGAIYWAHLDKIYYANDRKDA 119


>gi|115955248|ref|XP_001190079.1| PREDICTED: similar to DEADC1 protein [Strongylocentrotus
          purpuratus]
          Length = 108

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 17/95 (17%)

Query: 5  SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
          ++D ++M  A+  ++  +G       V CL+V +  +IG G  A         HAE+ AL
Sbjct: 7  AYDEKWMKEAVNMAKQALGR--GEVPVGCLLVYEDQIIGTGGNAANETKNATRHAEILAL 64

Query: 61 EEA-----------GEEARGATAYVTLEPCSHYGR 84
          EEA           GE       +VT+EPC     
Sbjct: 65 EEAMRWCDDKQLERGELFSQTKLFVTVEPCIMCAG 99


>gi|268591994|ref|ZP_06126215.1| guanine deaminase [Providencia rettgeri DSM 1131]
 gi|291312385|gb|EFE52838.1| guanine deaminase [Providencia rettgeri DSM 1131]
          Length = 155

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 43/115 (37%), Gaps = 23/115 (20%)

Query: 7   DARFMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
           D +F+  A+  +       G          ++V DG V+  GV           HAE+ A
Sbjct: 3   DTQFLQQAINLAMENVRAGGR-----PFGAIVVCDGQVVASGVNQMLELNDPTAHAELMA 57

Query: 60  LEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           L +AG++           Y + +PC      P C   I   GI RVV    + D 
Sbjct: 58  LRQAGQKLSRVKLDDCVVYASGQPC------PMCLAAIRMAGISRVVYAYSNDDA 106


>gi|49075844|gb|AAT49501.1| PA2499 [synthetic construct]
          Length = 152

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 23/114 (20%)

Query: 7   DARFMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
           D  FM  A+  +R      G          ++V+DG V+ RGV      +    HAE+QA
Sbjct: 3   DETFMREAIALARANVEAGGR-----PFGAVLVRDGRVLARGVNQIHETHDPSAHAELQA 57

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           + +A +        G   Y +  PC      P C   +  CGI+       + D
Sbjct: 58  IRQASQALGSPRLDGCVIYASGHPC------PMCLAAMHLCGIQAAWFAYSNED 105


>gi|303237263|ref|ZP_07323833.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella disiens FB035-09AN]
 gi|302482650|gb|EFL45675.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella disiens FB035-09AN]
          Length = 148

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 57/155 (36%), Gaps = 38/155 (24%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
             +  D R++  A  +S            V  L+VKD ++I  G     G P        
Sbjct: 5   KQTLLDYRYLRMARVWSENSYCKRR---QVGALVVKDKMIISDGY---NGTPSGFENICE 58

Query: 54  -----------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                      HAE  A   L  +G  + G+T YVT  PC        CA+ II+ GI+R
Sbjct: 59  DNDGLTKPYVLHAEANAITKLARSGNNSEGSTLYVTASPCIE------CAKLIIQSGIKR 112

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
           VV             G+  L +  I V+ +   + 
Sbjct: 113 VVYAEKYRLTE----GIDLLKRANIEVEYLNLEDN 143


>gi|316932708|ref|YP_004107690.1| CMP/dCMP deaminase zinc-binding protein [Rhodopseudomonas palustris
           DX-1]
 gi|315600422|gb|ADU42957.1| CMP/dCMP deaminase zinc-binding protein [Rhodopseudomonas palustris
           DX-1]
          Length = 148

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 48/127 (37%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            + C+IV+DG+VI +      T      HAE+ A+ +A      E       YVTLEPC 
Sbjct: 24  PIGCVIVRDGVVIAKAGNRTLTDRDPTAHAELLAIRQASAKLGSERLVDCDLYVTLEPC- 82

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGK 135
                  CA  I    IRR+     DP       G+++           +   + E E  
Sbjct: 83  -----TMCAGAISFARIRRLYFGAFDPKGGAVESGVRFYGQPTCHHAPEVYSAVGEREAA 137

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 138 AMLREFF 144


>gi|304317923|ref|YP_003853068.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779425|gb|ADL69984.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 147

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 44/125 (35%), Gaps = 40/125 (32%)

Query: 31  VACLIVKDGIVIGRGV---------------------------TAYGGCPHAEVQALEEA 63
           V  +IVKD  +I  G                                   HAE  A+ +A
Sbjct: 27  VGAVIVKDKHIISTGYNGAPTGLKHCEEVGCMRENLNIPSGERHELCRGTHAEQNAIIQA 86

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G   + AT YV+  PCS       CA+ II  GI+RVV   D PD        ++  
Sbjct: 87  ALNGVSTKDATIYVSASPCSM------CAKMIINAGIKRVVYEGDYPD----KLSFEYFK 136

Query: 121 QKGII 125
           +  I 
Sbjct: 137 EATIE 141


>gi|45185761|ref|NP_983477.1| ACR075Cp [Ashbya gossypii ATCC 10895]
 gi|44981516|gb|AAS51301.1| ACR075Cp [Ashbya gossypii ATCC 10895]
          Length = 245

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 66/179 (36%), Gaps = 33/179 (18%)

Query: 9   RFMSAALRFSRWHV--GLTSTNPSVACLIVK--DGIVIGRGVTAYG----GCPHAEVQAL 60
           + M  A+R +R+ +  G T     VAC+ V      +I  G+        G  HAE  A+
Sbjct: 6   QHMRTAIRLARYALDHGET----PVACVFVHTPSDQIIAYGMNDTNRSLTGIAHAEFGAI 61

Query: 61  EEAGEE--------ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            +  E          +  T YVT+EPC        CA  + + GI RV+    +     +
Sbjct: 62  AQVQELFGEQDASIFKEVTVYVTVEPC------VMCASALKQLGIGRVIFGCGNERFGGN 115

Query: 113 GRGLQWLSQ-------KGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164
           G  L            + + +  ++  E  + L  +  R+ E+      K A   D   
Sbjct: 116 GSILAVQRDTSTAPQNRHLAIPGVLRREAIMLLRYFYVRENERAPKPRAKAARKLDRET 174


>gi|107101945|ref|ZP_01365863.1| hypothetical protein PaerPA_01002992 [Pseudomonas aeruginosa PACS2]
 gi|254235497|ref|ZP_04928820.1| hypothetical protein PACG_01415 [Pseudomonas aeruginosa C3719]
 gi|254240930|ref|ZP_04934252.1| hypothetical protein PA2G_01610 [Pseudomonas aeruginosa 2192]
 gi|126167428|gb|EAZ52939.1| hypothetical protein PACG_01415 [Pseudomonas aeruginosa C3719]
 gi|126194308|gb|EAZ58371.1| hypothetical protein PA2G_01610 [Pseudomonas aeruginosa 2192]
          Length = 151

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 23/114 (20%)

Query: 7   DARFMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
           D  FM  A+  +R      G          ++V+DG V+ RGV      +    HAE+QA
Sbjct: 3   DEIFMREAIALARANVEAGGR-----PFGAVLVRDGRVLARGVNQIHETHDPSAHAELQA 57

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           + +A +        G   Y +  PC      P C   +  CGI+       + D
Sbjct: 58  IRQASQALGSPRLDGCVIYASGHPC------PMCLAAMHLCGIQAAWFAYSNED 105


>gi|281421106|ref|ZP_06252105.1| guanine deaminase [Prevotella copri DSM 18205]
 gi|281404641|gb|EFB35321.1| guanine deaminase [Prevotella copri DSM 18205]
          Length = 155

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 40/111 (36%), Gaps = 17/111 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
              M  A+  S+  V  T   P    +I KDGI+I     +         HAEV  + +A
Sbjct: 4   EELMHRAIELSKNSV-KTGGGP-FGAVIAKDGIIIAEASNSVTIDLDPTAHAEVNCIRQA 61

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
             + +     G   Y + EPC      P C   I    + R+    D  D 
Sbjct: 62  TRKLKTFNLEGCEIYTSCEPC------PMCLGAIYWAHLDRIYYANDRKDA 106


>gi|229046739|ref|ZP_04192382.1| Cytosine deaminase [Bacillus cereus AH676]
 gi|229110499|ref|ZP_04240069.1| Cytosine deaminase [Bacillus cereus Rock1-15]
 gi|229128373|ref|ZP_04257354.1| Cytosine deaminase [Bacillus cereus BDRD-Cer4]
 gi|228655232|gb|EEL11089.1| Cytosine deaminase [Bacillus cereus BDRD-Cer4]
 gi|228672983|gb|EEL28257.1| Cytosine deaminase [Bacillus cereus Rock1-15]
 gi|228724557|gb|EEL75871.1| Cytosine deaminase [Bacillus cereus AH676]
          Length = 158

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 43/107 (40%), Gaps = 22/107 (20%)

Query: 13  AALRFSRWHVG-LTSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHAEVQALEEAGEE 66
            AL  +   +   T     V  +IV  +  VI RG            HAE+ A+  AGE 
Sbjct: 1   MALEEAEKALKENTYP---VGAVIVDGNNNVIARGRNRVHPEKDITAHAELDAIRNAGEA 57

Query: 67  ARGA-------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
              A       T Y TLEPC      P C   I+   I+RVV  ++D
Sbjct: 58  MFDAKIKNERFTIYSTLEPC------PMCTGGILFAKIQRVVWLLND 98


>gi|322690120|ref|YP_004209854.1| cytidine/deoxycytidine deaminase [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320461456|dbj|BAJ72076.1| putative cytidine/deoxycytidine deaminase [Bifidobacterium longum
           subsp. infantis 157F]
          Length = 149

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 56/153 (36%), Gaps = 24/153 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY--GGCP--HAEVQA 59
            +D   M  AL  +       + +  V  +++   G ++GRG       G P  HAE+ A
Sbjct: 2   EYDEA-MRCALELA--GQAAAAGDVPVGAVVLDAAGQIVGRGYNTREADGDPLAHAEIIA 58

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           + +A +          T  VTLEPC      P CA   I+  I  +     DP +   G 
Sbjct: 59  MRQAAQALGAWNLADCTLAVTLEPC------PMCAGACIQTHIGTIAFGAWDPKLGACGS 112

Query: 115 GLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
                    I     +   ++E E +  L  + 
Sbjct: 113 IWDIPRDPHIGHSPEVHGGVLEVECQSILTDFF 145


>gi|311993209|ref|YP_004010075.1| dCMP deaminase [Enterobacteria phage CC31]
 gi|284178047|gb|ADB81713.1| dCMP deaminase [Enterobacteria phage CC31]
          Length = 188

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 47/168 (27%), Gaps = 60/168 (35%)

Query: 31  VACLIVKDGIVIGRGVTA-YGGCP------------------------------------ 53
           V  +I K+G +I  G      G                                      
Sbjct: 24  VGAVIEKNGRIISTGYNGSPAGGVNCCDHAEDKGWLVKKPGSGLRQDGPIPKYGLDTKFR 83

Query: 54  ------------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A+      G    GAT YVTL PC      P CA+ I + GI+
Sbjct: 84  AEHSEWSKINEIHAELNAILFAARNGSSIEGATMYVTLSPC------PDCAKAIAQSGIK 137

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQV 146
           ++V C               L   GI +  + ++         +    
Sbjct: 138 KLVYCETYDK--NIDGWDNILRDAGIEIHHVPKTNLNKLNWYNVENYC 183


>gi|261418466|ref|YP_003252148.1| ComE operon protein 2 [Geobacillus sp. Y412MC61]
 gi|319767573|ref|YP_004133074.1| ComE operon protein 2 [Geobacillus sp. Y412MC52]
 gi|261374923|gb|ACX77666.1| ComE operon protein 2 [Geobacillus sp. Y412MC61]
 gi|317112439|gb|ADU94931.1| ComE operon protein 2 [Geobacillus sp. Y412MC52]
          Length = 156

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 58/151 (38%), Gaps = 34/151 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------ 53
           M   ++D  FM+ +   +      T T  +V   IV+D  +I  G      G        
Sbjct: 1   MERITWDQYFMAQSHLLALRS---TCTRLAVGATIVRDKRIIAGGYNGSIAGGAHCTDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A+ +    G    GA  YVT  PC H      C + II+ GIR
Sbjct: 58  CYVIDGHCVRTIHAEMNAILQCAKFGVPTEGAEMYVTHFPCLH------CCKAIIQSGIR 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            V    D  +   +   L+  +Q G+ + ++
Sbjct: 112 AVYYAQDYKNHPYA---LELFAQAGVRLVQV 139


>gi|116073891|ref|ZP_01471153.1| putative riboflavin-specific deaminase [Synechococcus sp. RS9916]
 gi|116069196|gb|EAU74948.1| putative riboflavin-specific deaminase [Synechococcus sp. RS9916]
          Length = 219

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 69/194 (35%), Gaps = 14/194 (7%)

Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA--------DDPE 206
            +AVS D  +   G G   + G   +  +    A +D  L+G GT+ A        D   
Sbjct: 1   MLAVSLDGRLAFPGGGPAQLGGAGDRQVLEQALAWADGCLMGAGTLRAHHCTCLIRDSGL 60

Query: 207 LTCRLNGLQEHSPMRIILDPHFK--LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
           L  R    +   P   ++          +    +  L   ++    + +   A +     
Sbjct: 61  LEERAKAQRSPQPTACVVSRSATPTFPEEWPFFQQPLERWLL----HGEEAAAPSAAPAG 116

Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            +         ++ LT L  +G+  L++ GGA++  S +    VD + L  +  V+G   
Sbjct: 117 FSQRLAMGATWQETLTQLTAQGMQRLVLLGGASLVASCLQDDAVDDLQLTLTPRVVGGEH 176

Query: 325 IPSPLEEGYLEKNF 338
              P +   L  + 
Sbjct: 177 SWVPFDAAGLPPSL 190


>gi|257437839|ref|ZP_05613594.1| putative deoxycytidylate deaminase [Faecalibacterium prausnitzii
           A2-165]
 gi|257199499|gb|EEU97783.1| putative deoxycytidylate deaminase [Faecalibacterium prausnitzii
           A2-165]
          Length = 168

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 50/145 (34%), Gaps = 34/145 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-------------TAYG 50
           ++D  FM  AL  +         +  V   IV  +  ++  G                  
Sbjct: 17  NWDEYFMGIALLTAMRSK---DPSSQVGACIVSPENKILSLGYNGMPIGCDDDAMPWERE 73

Query: 51  GCP---------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           G P         HAE+ A L  A    +GA  YVTL PC+       CA+ II+ GI  V
Sbjct: 74  GDPLDTKYMYVCHAELNAILNSAHNNLKGARVYVTLFPCNE------CAKAIIQSGISEV 127

Query: 101 V-VCVDDPDVRVSGRGLQWLSQKGI 124
           V       D   S        + G+
Sbjct: 128 VYYGDKYHDSDSSVAARFMFKKAGV 152


>gi|328676234|gb|AEB27104.1| tRNA-specific adenosine-34 deaminase [Francisella cf. novicida Fx1]
          Length = 153

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 52/155 (33%), Gaps = 23/155 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
             S  D  FM  A + +          P +  ++V+D  +I +      G      HAE+
Sbjct: 3   NYSDQDIFFMQKAYQQALLA-YQAGEVP-IGAVLVRDDQIIAQNFNQTIGLNDPTAHAEI 60

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
             L  A  +           YVTLEPC        C   +I+  +  +V   DD  V   
Sbjct: 61  LVLRSAALKLDNYRLVNTKLYVTLEPCIM------CLGGLIQARVPELVYACDDSRVGAF 114

Query: 113 GRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
            R  +    K I     +   +M  E    L  + 
Sbjct: 115 SRE-KLHHNKNINHNLGVTAGVMADECGKLLKDFF 148


>gi|154505649|ref|ZP_02042387.1| hypothetical protein RUMGNA_03188 [Ruminococcus gnavus ATCC 29149]
 gi|153794088|gb|EDN76508.1| hypothetical protein RUMGNA_03188 [Ruminococcus gnavus ATCC 29149]
          Length = 162

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 56/154 (36%), Gaps = 35/154 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
           ++D  FM  A+      +     N  V C IV +D  ++  G                  
Sbjct: 10  TWDEYFMGVAM---LSGMRSKDPNTQVGCCIVSQDNKILSMGYNGFPKGCSDDEFPWARE 66

Query: 47  ------TAYGGCPHAEVQALEE-AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    H+E+ A+   +G    GA  YV+L PC+       CA+ II+ GI+ 
Sbjct: 67  GENPLETKYVYSTHSELNAILNYSGGSLAGAKLYVSLFPCNE------CAKAIIQSGIKE 120

Query: 100 VVVCVDDP-DVRVSGRGLQWLSQKGIIVDRMMES 132
           V+   D   D        + +   G+   +   S
Sbjct: 121 VIYDCDKYADTPSVMASKRMMDAAGVRYHQYHRS 154


>gi|257067316|ref|YP_003153571.1| cytosine/adenosine deaminase [Brachybacterium faecium DSM 4810]
 gi|256558134|gb|ACU83981.1| cytosine/adenosine deaminase [Brachybacterium faecium DSM 4810]
          Length = 175

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 59/175 (33%), Gaps = 20/175 (11%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEV 57
           P +  D RF+S A+  +R           +  ++V DG V+  G            H E 
Sbjct: 5   PTAEDDRRFLSLAIEQARKSW--DEGGVPIGAVLVHDGKVLAAGHNQRVQKDSAILHGET 62

Query: 58  QALEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
             +E+AG       R +  Y TL PC     +       +   I R+V+  +    R   
Sbjct: 63  DTIEKAGRLRASVYRESVLYTTLSPCIMCAGTA------LLYEIPRIVIGEN----RAFE 112

Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG 168
                L ++G+ VD + + E    +   +  + E  S                 G
Sbjct: 113 MSEALLRERGVAVDVLDDPECIELMERMIAERPEIWSEDIGVETAELGARTDAPG 167


>gi|330507911|ref|YP_004384339.1| dCMP deaminase [Methanosaeta concilii GP-6]
 gi|328928719|gb|AEB68521.1| dCMP deaminase [Methanosaeta concilii GP-6]
          Length = 153

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 50/147 (34%), Gaps = 41/147 (27%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------- 46
            D  FM  A+  ++    L +    V  L VK+  ++  G                    
Sbjct: 9   LDEYFMEIAIVVAKRSTCLRN---QVGALFVKNKRILTTGYNGAPAGLDHCDVVGCAREG 65

Query: 47  ------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                        HAE  A+ +A   G    GAT Y T +PC        CA+ +I   +
Sbjct: 66  VQSGTRHELCRAVHAEQNAIIQAAMHGISIEGATLYCTHQPCI------LCAKMMINARV 119

Query: 98  RRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            +VV     PD       L +L Q GI
Sbjct: 120 AKVVYLHCYPD----QTALDFLEQAGI 142


>gi|119961460|ref|YP_946593.1| cytidine/deoxycytidylate deaminase [Arthrobacter aurescens TC1]
 gi|119948319|gb|ABM07230.1| putative cytidine/deoxycytidylate deaminase [Arthrobacter aurescens
           TC1]
          Length = 177

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 57/166 (34%), Gaps = 32/166 (19%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
           P  +    +M  AL  +R  +  T   P  A ++  DG V+G G            HAE+
Sbjct: 6   PYHADHLAWMGLALDEARLAL-KTDDVPIGAVVLGPDGGVLGSGRNEREAHGDPTAHAEI 64

Query: 58  QALEEA----------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
            A+ EA                G      T  VTLEPC+       CA  I+   I RVV
Sbjct: 65  VAIREAAAALRQLAHDSGASGDGWRLEDCTLVVTLEPCAM------CAGAIVLARIPRVV 118

Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
               D      G     L ++ +     +   + E E    L  + 
Sbjct: 119 FGAWDEKAGAVGSVFDILRERRLNHWVEVYAGVREDECAALLRDFF 164


>gi|11068000|gb|AAG28837.1| cytosine deaminase [Bifidobacterium longum]
          Length = 143

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 23/147 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY--GGCP--HAEVQALEEAGE 65
           M  AL  +       + +  V  +++   G ++GRG       G P  HAE+ A+ +A +
Sbjct: 1   MRCALELA--GQAAAAGDVPVGAVVLDAAGQIVGRGYNTREADGDPLAHAEIIAMRQAAQ 58

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                     T  VTLEPC      P CA   I+  I  +     DP +   G       
Sbjct: 59  ALGAWNLADCTLAVTLEPC------PMCAGACIQTHIGTIAFGAWDPKLGACGSIWDIPR 112

Query: 121 QKGI-----IVDRMMESEGKIFLHAYL 142
              I     +   ++E E +  L  + 
Sbjct: 113 DPHIGHSPEVHGGVLEGECQSILTDFF 139


>gi|50286109|ref|XP_445483.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524788|emb|CAG58394.1| unnamed protein product [Candida glabrata]
 gi|109706861|gb|ABG43005.1| cytosine deaminase [Candida glabrata]
 gi|109706865|gb|ABG43007.1| cytosine deaminase [Candida glabrata]
          Length = 155

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 59/157 (37%), Gaps = 19/157 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG--GCP--HAE 56
             + +DA  M  A   +          P   CLI  KDG V+GRG       G P  H E
Sbjct: 3   NAAQWDALGMKIAYEEAAKG-FEEGGVPIGGCLINNKDGTVLGRGHNMRFQKGSPTLHGE 61

Query: 57  VQALEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           +  LE  G       +  T Y TL PC        C   I+  GI R V+   D      
Sbjct: 62  ISTLENCGRLEGKVYKDTTLYTTLSPCDM------CTGAILLYGIPRCVIGESDNFKSPG 115

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
               ++L  +G+ V +M +   K  +  ++  + +  
Sbjct: 116 E---EYLKSRGVEVVQMNDEPCKAIMKKFIDTRPQDW 149


>gi|17232126|ref|NP_488674.1| hypothetical protein alr4634 [Nostoc sp. PCC 7120]
 gi|17133771|dbj|BAB76333.1| alr4634 [Nostoc sp. PCC 7120]
          Length = 140

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 21/117 (17%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
             FM  A+  ++              +IVKD  V+               HAE+  +   
Sbjct: 4   EYFMRLAIAEAKKGDAPY------GAVIVKDNQVVAFAHNTVARDNDPSAHAEINVIRRL 57

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             + +     G + Y T EPC      P CA   +  GI  ++      D+ ++ + 
Sbjct: 58  TAQLQSFSLAGYSIYTTGEPC------PMCAAACVWSGIAEIIYGASIQDLILANQS 108


>gi|261880389|ref|ZP_06006816.1| cytidine/deoxycytidylate deaminase [Prevotella bergensis DSM 17361]
 gi|270332934|gb|EFA43720.1| cytidine/deoxycytidylate deaminase [Prevotella bergensis DSM 17361]
          Length = 156

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 50/139 (35%), Gaps = 32/139 (23%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----------------Y 49
            D R++  A  ++            V  L+VK+ ++I  G                    
Sbjct: 13  LDGRYLRMARIWAENSYCKRR---QVGALVVKNKMIISDGYNGTPSGFENVCEDDNDLTK 69

Query: 50  GGCPHAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               HAE  A   L  +   + GAT YVT  PC        CA+ II+ GI+RVV     
Sbjct: 70  PYVLHAEANAITKLARSHNNSEGATLYVTASPCIE------CAKLIIQAGIKRVVYGEKY 123

Query: 107 PDVRVSGRGLQWLSQKGII 125
                   G+  L + GI 
Sbjct: 124 RL----DDGICLLRRAGIE 138


>gi|197302162|ref|ZP_03167221.1| hypothetical protein RUMLAC_00888 [Ruminococcus lactaris ATCC
           29176]
 gi|197298593|gb|EDY33134.1| hypothetical protein RUMLAC_00888 [Ruminococcus lactaris ATCC
           29176]
          Length = 164

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 54/152 (35%), Gaps = 35/152 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
           S+D  FM  A+      +     N  V C IV +D  ++  G                  
Sbjct: 12  SWDEYFMGVAM---LSGMRSKDPNTQVGCCIVSQDNKILSMGYNGLPIGCSDDEFPWARE 68

Query: 47  ------TAYGGCPHAEVQALEE-AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    H+E+ A+   +G    GA  YV+L PC+       CA+ II+ GI+ 
Sbjct: 69  GEDPLDTKYVYTTHSELNAILNYSGGSLAGAKLYVSLFPCNE------CAKAIIQSGIKE 122

Query: 100 VVVCVDDP-DVRVSGRGLQWLSQKGIIVDRMM 130
           V+   D            + +   G+   +  
Sbjct: 123 VIYDCDKYAHTPAVMASKRMMDAAGVRYHQYH 154


>gi|304405271|ref|ZP_07386931.1| CMP/dCMP deaminase zinc-binding [Paenibacillus curdlanolyticus YK9]
 gi|304346150|gb|EFM11984.1| CMP/dCMP deaminase zinc-binding [Paenibacillus curdlanolyticus YK9]
          Length = 172

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 52/163 (31%), Gaps = 27/163 (16%)

Query: 1   MPVS--SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPH 54
           MP S    D  +M  A+  +                +V +  VI               H
Sbjct: 1   MPQSQDELDRMYMRQAVDCAMEGTQRME--FPFGACLVHNDRVIAIASNRCLSSKDPTMH 58

Query: 55  AEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AE+ A+ EA         + AT Y T EPC        C   I   GI R+V  +   D 
Sbjct: 59  AEMIAIREACGTLDRASLQQATLYATTEPC------VMCMGAIHWAGIPRIVYGLTIEDS 112

Query: 110 --------RVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
                   ++S R +   +   + +   + +E    L     R
Sbjct: 113 MVLGFKEIQLSARTIAAHAAYEMTLKGGVLTEECQQLFHNWNR 155


>gi|268552503|ref|XP_002634234.1| Hypothetical protein CBG01804 [Caenorhabditis briggsae]
 gi|187037916|emb|CAP22833.1| hypothetical protein CBG_01804 [Caenorhabditis briggsae AF16]
          Length = 426

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 66/170 (38%), Gaps = 24/170 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQAL 60
             D  F+  A   +   +        V C+ V DG  IGRG       G P  HAE+ A+
Sbjct: 7   EDDRIFLEQAFTLAEEALNQDEV--PVGCVFVVDGEEIGRGRNRVNETGDPTRHAEMVAV 64

Query: 61  --------EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD---V 109
                   EE+    + +  YV+LEPC        C+  + + GIR++V   ++P    V
Sbjct: 65  TEIWSKYGEESNNLLKKSVLYVSLEPCIM------CSSAMYQLGIRKMVYGAENPRFGGV 118

Query: 110 RVSGRGLQWLSQKGIIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAV 158
           R  G   ++  +  I +   + +E     L A+  +Q         K   
Sbjct: 119 RSVGSAEKYREENNIEIVAGVWAERSVGMLKAFYEKQNPFAPPEKRKTKT 168


>gi|328950667|ref|YP_004368002.1| tRNA(Ile)-lysidine synthase [Marinithermus hydrothermalis DSM
           14884]
 gi|328450991|gb|AEB11892.1| tRNA(Ile)-lysidine synthase [Marinithermus hydrothermalis DSM
           14884]
          Length = 528

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 17/124 (13%)

Query: 30  SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA----GEE-ARGATAYVTLEPCS 80
            +  ++V+DG V+     A         HAE+ AL  A    GE+   GAT YVTLEPC 
Sbjct: 405 PIGAVLVRDGAVLAEAANAVEASRDATAHAELLALRTALRRVGEKVLPGATLYVTLEPC- 463

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
                P C   I+E  + RVV  V+  +++     +  L  +  +    +E E    L  
Sbjct: 464 -----PMCYGAILEARVARVVYGVE--NLKAGAFTVHGLEPRVALEAGRVEGECAKVLKD 516

Query: 141 YLTR 144
           +  R
Sbjct: 517 FFAR 520


>gi|167041893|gb|ABZ06633.1| putative cytidine and deoxycytidylate deaminase zinc-binding region
           [uncultured marine microorganism HF4000_133G03]
          Length = 149

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 38/110 (34%), Gaps = 17/110 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEE 66
           M+ A+  S   V  T   P    +IVKD  +I  G            H E+ A+ +A + 
Sbjct: 1   MTRAIELSIESV-NTGGGP-FGSVIVKDEKIIAEGFNKVTSTNDPTAHGEIVAIRKACKS 58

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
                  G   Y T EPC      P C   I    I +V       D + 
Sbjct: 59  LNNFNLSGCELYSTCEPC------PMCLSAIYWAHIDKVYYANTRDDAKK 102


>gi|332185526|ref|ZP_08387274.1| cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Sphingomonas sp. S17]
 gi|332014504|gb|EGI56561.1| cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Sphingomonas sp. S17]
          Length = 142

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 43/107 (40%), Gaps = 17/107 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEE 66
           M  AL  +R   G     P V  +IV+ G V+     A    +    HAE+QA+  A E+
Sbjct: 1   MRLALDAARRA-GEEGEVP-VGAVIVRHGQVVSVAANAPRRLHDPTAHAEIQAIRAAAEK 58

Query: 67  -----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                      +VTLEPC+       CA  I    I R+     DP 
Sbjct: 59  LGRERLEECDLWVTLEPCAM------CAGAIAHARIARLYYAASDPK 99


>gi|242399255|ref|YP_002994679.1| Deoxycytidylate deaminase [Thermococcus sibiricus MM 739]
 gi|242265648|gb|ACS90330.1| Deoxycytidylate deaminase [Thermococcus sibiricus MM 739]
          Length = 180

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 51/146 (34%), Gaps = 32/146 (21%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG---------------- 50
           D  FM  A +     +  T     V  + VKDG ++  G                     
Sbjct: 23  DEYFMLIA-KL--VGLRATCPRLKVGAVAVKDGYILATGYNGAPRNMDHCIDVGCLVVDG 79

Query: 51  ---GCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                 HAE   +  A   G    GAT YVT  PC        C + ++  GIR ++   
Sbjct: 80  HCHRAVHAEQNVIAMAARKGISLEGATLYVTHFPCD------TCFKLLVNAGIREIIYED 133

Query: 105 DDPDVRVSGRGLQWLSQKGIIVDRMM 130
             P+ + +   L+   +KGI+  R  
Sbjct: 134 IYPN-KATELLLKEAQEKGIVKIRQF 158


>gi|116050443|ref|YP_790738.1| putative deaminase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115585664|gb|ABJ11679.1| putative deaminase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 151

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 23/114 (20%)

Query: 7   DARFMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
           D  FM  A+  +R      G          ++V+DG V+ RGV      +    HAE+QA
Sbjct: 3   DETFMREAIALARANVEAGGR-----PFGAVLVRDGRVLARGVNQIHETHDPSAHAELQA 57

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           + +A +        G   Y +  PC      P C   +  CGI+       + D
Sbjct: 58  IRQASQALGSPHLDGCVIYASGHPC------PMCLAAMHLCGIQAAWFAYSNED 105


>gi|260909419|ref|ZP_05916126.1| cytidine/deoxycytidylate deaminase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260636435|gb|EEX54418.1| cytidine/deoxycytidylate deaminase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 155

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 48/146 (32%), Gaps = 17/146 (11%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
            D + M      +     L      +  +I   G V+ R      T      HAE+QA+ 
Sbjct: 13  IDEQMMRK--ALAEAQQALAQGEVPIGAVIACKGRVVARAHNLTETLCDVTAHAEMQAIT 70

Query: 62  EAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A     G      T YVT+EPC      P CA       + R+V    D          
Sbjct: 71  AAANMLGGKYLPECTLYVTVEPC------PMCAGACGWAQLGRIVYGTRDEKRGYERFAP 124

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYL 142
             L  K  +   ++E E +  +  + 
Sbjct: 125 NVLHAKATVTAGVLEEECRQLMKDFF 150


>gi|91215299|ref|ZP_01252271.1| hypothetical protein P700755_13417 [Psychroflexus torquis ATCC
           700755]
 gi|91186904|gb|EAS73275.1| hypothetical protein P700755_13417 [Psychroflexus torquis ATCC
           700755]
          Length = 149

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 16/118 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
               +FM  A+ +++     T    +   +IVK+G +I  G    G       HAE+  +
Sbjct: 4   ELHEKFMLKAINWAKKGK-DTDGGGAFGAVIVKEGHIIAEGHNQVGSKTDCTQHAELAMV 62

Query: 61  EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           +EA      +  +G   Y + EPC     +   A         +V       D + +G
Sbjct: 63  QEACRKLKSKSLKGCVLYTSCEPCLMCLGATRWADL------DQVFYGASADDAKEAG 114


>gi|169350292|ref|ZP_02867230.1| hypothetical protein CLOSPI_01036 [Clostridium spiroforme DSM 1552]
 gi|169293075|gb|EDS75208.1| hypothetical protein CLOSPI_01036 [Clostridium spiroforme DSM 1552]
          Length = 241

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 11/149 (7%)

Query: 221 RIILDPHFKLSLDSKIIK--TALLAPVIIVTENDDPVLALAFRKKNIN--IIYCDCRDLK 276
            + +DP  KL   S  +   T     + ++TE          RK NI+  I+  D  D K
Sbjct: 93  YVSIDPLGKLGWQSNTLTYETTTAHVLEVLTEKASSAYKAMLRKLNISYVIVGKDELDYK 152

Query: 277 KLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL- 334
            L+  L  +  + +L++ GG  +  SFI + L D + L  + +  G    PS  E     
Sbjct: 153 LLMEKLYHKFNIKTLMLGGGGVLNWSFIQTGLCDELSLVMAPVADGASQSPSIFETKEDL 212

Query: 335 ----EKNFMCVRRDYFGS-DVCLEYIGKN 358
                  F     +   +  + L Y+ KN
Sbjct: 213 TSDKPVGFELKNVEVLENGGIWLRYLIKN 241


>gi|56421051|ref|YP_148369.1| late competence DNA binding and uptake protein [Geobacillus
           kaustophilus HTA426]
 gi|56380893|dbj|BAD76801.1| late competence protein (DNA binding and uptake) [Geobacillus
           kaustophilus HTA426]
          Length = 156

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 58/151 (38%), Gaps = 34/151 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------ 53
           M   ++D  FM+ +   +      T T  +V   IV+D  +I  G      G        
Sbjct: 1   MERITWDQYFMAQSHLLALRS---TCTRLAVGATIVRDKRIIAGGYNGSIAGGAHCTDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A+ +    G    GA  YVT  PC H      C + II+ GIR
Sbjct: 58  CYVIDGHCVRTIHAEMNAILQCAKFGVPTEGAEMYVTHFPCLH------CCKAIIQSGIR 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            V    D  +   +   L+  +Q G+ + ++
Sbjct: 112 AVYYAQDYKNHPYA---LELFAQAGVRLVQV 139


>gi|218532522|ref|YP_002423338.1| bifunctional deaminase-reductase domain protein [Methylobacterium
           chloromethanicum CM4]
 gi|218524825|gb|ACK85410.1| bifunctional deaminase-reductase domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 238

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTE---NDDPVLALAFRKKNINIIYCDCRDLKKL 278
           + LD    +   ++         VI++T    +DD +  L    ++  I      D    
Sbjct: 90  VALDARGAMDWGAR--NDIEGDHVIVLTTGQASDDRLRRLKAGGQSYIIAGEREVDFALA 147

Query: 279 LTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
           L  L    G+  LLVEGG  +  S + + LVD + L  +  V G  G P+  +    E +
Sbjct: 148 LAKLKRLFGIERLLVEGGGRINGSMLKAGLVDELSLLLAPAVDGVLGTPALFDFEGGEGD 207

Query: 338 FMCVRRD 344
            M  RR 
Sbjct: 208 SMGSRRR 214


>gi|78101280|pdb|2A8N|A Chain A, Biochemical And Structural Studies Of A-To-I Editing By
           Trna:a34 Deaminases At The Wobble Position Of Transfer
           Rna
 gi|78101281|pdb|2A8N|B Chain B, Biochemical And Structural Studies Of A-To-I Editing By
           Trna:a34 Deaminases At The Wobble Position Of Transfer
           Rna
          Length = 144

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 53/147 (36%), Gaps = 22/147 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA- 63
            FM  AL  +R   G     P +  ++V DG VI R             HAE+  +  A 
Sbjct: 6   HFMELALVEARSA-GERDEVP-IGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMAC 63

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW- 118
                E   GA  YVTLEPC        CA  I    IRR+     DP       G+++ 
Sbjct: 64  EALGQERLPGADLYVTLEPC------TMCAAAISFARIRRLYYGAQDPKGGAVESGVRFF 117

Query: 119 ----LSQKGIIVDRMMESEGKIFLHAY 141
                     +   + ESE    L  +
Sbjct: 118 SQPTCHHAPDVYSGLAESESAEILRQF 144


>gi|167032047|ref|YP_001667278.1| CMP/dCMP deaminase zinc-binding [Pseudomonas putida GB-1]
 gi|166858535|gb|ABY96942.1| CMP/dCMP deaminase zinc-binding [Pseudomonas putida GB-1]
          Length = 159

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQ-----ALEEAGEEARGATAYVTLEPCS 80
            V  ++V+ G VIG+G            HAE+      A   +     G+T YVTLEPCS
Sbjct: 32  PVGAVLVQHGQVIGQGFNRPIIDSDPSAHAEMVAIRAAAKAASNYRLPGSTLYVTLEPCS 91

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  CA  I+   + RVV    +P   +     Q     +L+ + I+   ++     
Sbjct: 92  M------CAGLIVHSRVMRVVFGALEPKAGIVQSQGQFFGQGFLNHRVIVEGGVLAEACG 145

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 146 QILSDFF 152


>gi|227529514|ref|ZP_03959563.1| tRNA-adenosine deaminase [Lactobacillus vaginalis ATCC 49540]
 gi|227350599|gb|EEJ40890.1| tRNA-adenosine deaminase [Lactobacillus vaginalis ATCC 49540]
          Length = 173

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 42/127 (33%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            +  ++   G +IGRG            HAE+ A+ EA              YVTLEPC 
Sbjct: 33  PIGAVVTYQGKIIGRGHNMREKFQDVTYHAEMLAIMEACSYLHSWRLEDCDLYVTLEPCM 92

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-----QWLSQKGIIVDRMMESEGK 135
                  C+  I+   IR V     DP                L+ +  +   ++  +  
Sbjct: 93  M------CSGAIVNARIRNVFYGATDPKAGTVDSLYHLLGDDRLNHQAYVTAGVLGEQCS 146

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 147 QMLKDFF 153


>gi|227355507|ref|ZP_03839902.1| guanine deaminase [Proteus mirabilis ATCC 29906]
 gi|227164303|gb|EEI49192.1| guanine deaminase [Proteus mirabilis ATCC 29906]
          Length = 153

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 59/167 (35%), Gaps = 32/167 (19%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVA-----CLIVKDGIVIGRGVTAYGG----CPHAEV 57
           D +F+  A+  +       + N  V       +IVK+G VI   V           HAE+
Sbjct: 3   DKQFIQQAISLA-------TENVKVGGRPFGAVIVKNGQVIAHAVNQITATNDPTAHAEL 55

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL EAG+     +      Y + +PC      P C   +   GI ++     + D +  
Sbjct: 56  LALREAGKVLGRAKLDDCVVYASGQPC------PMCLAAMRMAGISQIFYAYSNDDAQPY 109

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
           G     LS   I     +  E +  L     +  +++     ++   
Sbjct: 110 G-----LSTANIAKALRVAPEQQEGLQFVQIKPEDEKQPALYQLWSQ 151


>gi|149369588|ref|ZP_01889440.1| putative deoxycytidylate deaminase [unidentified eubacterium SCB49]
 gi|149357015|gb|EDM45570.1| putative deoxycytidylate deaminase [unidentified eubacterium SCB49]
          Length = 142

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 62/154 (40%), Gaps = 37/154 (24%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTN-PSVACLIVKDGIVIGRGVTAYGGCP------ 53
           M  S    ++  A LR ++    L+  N   V  LIVK  ++I  G     G P      
Sbjct: 1   MKASKQ-KKYDVAYLRMAKEWSKLSHCNRKQVGALIVKGNMIISDGY---NGTPTGFDNE 56

Query: 54  -------------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                        HAE  A+     + +  +GAT Y+TL PC        C++ I + GI
Sbjct: 57  CEDCDNNTHWYVLHAEANAILKVASSTQSCQGATLYITLSPC------KDCSKLIHQSGI 110

Query: 98  RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
           +RVV             GL++L + G+ +  + E
Sbjct: 111 KRVVY----HKGYKDDSGLKFLEKAGVSITHIEE 140


>gi|134300992|ref|YP_001114488.1| CMP/dCMP deaminase [Desulfotomaculum reducens MI-1]
 gi|134053692|gb|ABO51663.1| CMP/dCMP deaminase, zinc-binding protein [Desulfotomaculum reducens
           MI-1]
          Length = 147

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 51/151 (33%), Gaps = 43/151 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D  FM      +     L      V  +IVKD  ++  G                   
Sbjct: 4   SWDEYFMEITRVVATRSTCLRRK---VGAVIVKDNRILATGYNGAPAGLTHCLEIGCLRE 60

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G   +G+  YVT +PC        C++ I+ 
Sbjct: 61  KLGVPSGQRHELCRALHAEQNAIIQAAVHGTAIQGSIIYVTDQPC------VMCSKMIVN 114

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            GI++V+   D PD       LQ   +  I 
Sbjct: 115 AGIKKVIFAGDYPD----DLSLQIFKEACIE 141


>gi|328771384|gb|EGF81424.1| hypothetical protein BATDEDRAFT_87367 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 182

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 56/173 (32%), Gaps = 33/173 (19%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAY----GGCPHAEV 57
            +  D ++M+ AL+ +          P V C+ V     +IG+G         G  HAE 
Sbjct: 5   FNQDDKKYMTMALQLA-SDAYDVGEVP-VGCVFVHASKGIIGQGRNRTNESLNGVRHAEF 62

Query: 58  QALEE--------------AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           +A+++                        YVT+EPC        CA  +    IRRVV  
Sbjct: 63  EAIDQIMSMRPLETDLDTYVKTTFPQTDVYVTVEPCIM------CASALRHLQIRRVVFG 116

Query: 104 VDDPDVRVSGRGLQWLSQ---KGIIVD---RMMESEGKIFLHAYLTRQVEKRS 150
             +      G            G        + ++E  + L  +  R+     
Sbjct: 117 CGNDKFGGCGSVFHIHDDGVGAGFNYPAVGGLFKNEAIMALRRFYVRENNHAP 169


>gi|308802662|ref|XP_003078644.1| putative deaminase (ISS) [Ostreococcus tauri]
 gi|116057097|emb|CAL51524.1| putative deaminase (ISS) [Ostreococcus tauri]
          Length = 247

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 20/132 (15%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVT--AYGGCP--HA 55
             +S DA  M  AL  +R+  G     P +  +IV++  G V+          G P  HA
Sbjct: 66  STASLDASRMRRALEIARFG-GARGEVP-IGAVIVENDTGRVVAACANACERDGDPTAHA 123

Query: 56  EVQALEEAGE------EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           E++A+    E        R  T YVTLEPC+       CA  I++  + RVV    +  +
Sbjct: 124 ELRAIRMGAETLGNWRHLRKTTMYVTLEPCAM------CAGGILQARVGRVVYGAKNALL 177

Query: 110 RVSGRGLQWLSQ 121
              G  +  L +
Sbjct: 178 GADGSWVSVLRK 189


>gi|14520789|ref|NP_126264.1| dCMP deaminase, putative [Pyrococcus abyssi GE5]
 gi|5458005|emb|CAB49495.1| dCMP deaminase, putative [Pyrococcus abyssi GE5]
          Length = 182

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 50/146 (34%), Gaps = 32/146 (21%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG---------------- 50
           D  FM  A   S      T     V  + VKDG ++  G                     
Sbjct: 23  DEYFMLIAKLVSLRA---TCPRLRVGAVAVKDGYILATGYNGAPRNMDHCIDVGCIMVDG 79

Query: 51  ---GCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                 HAE   +  A   G    GAT YVT  PC        C + +I  GI+ +V   
Sbjct: 80  HCHRAVHAEQNVIAMAARKGISLEGATLYVTHFPCD------TCLKLLINAGIKEIVYEE 133

Query: 105 DDPDVRVSGRGLQWLSQKGIIVDRMM 130
             P+  V+   L+   +KG+I  R  
Sbjct: 134 MYPN-EVTEMLLKEAQEKGLIKIRQF 158


>gi|313674792|ref|YP_004052788.1| cmp/dcmp deaminase zinc-binding protein [Marivirga tractuosa DSM
           4126]
 gi|312941490|gb|ADR20680.1| CMP/dCMP deaminase zinc-binding protein [Marivirga tractuosa DSM
           4126]
          Length = 138

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 21/123 (17%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY---GGCPHAEVQALEEA 63
             +M  A+  ++              ++V  +G  +  G       G   HAE+ A+ + 
Sbjct: 4   EFWMKLAIDLAKERKT------PFGAVLVDPEGQHVS-GYNTTILDGAVAHAEINAISKI 56

Query: 64  G----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                + A   T + T+EPC      P C   II  GI  V+   D       G  +   
Sbjct: 57  KQLDYDRAEELTLFTTVEPC------PMCMSAIIWAGIGEVIYGCDISTASKYGNQINIR 110

Query: 120 SQK 122
           ++K
Sbjct: 111 AKK 113


>gi|288869851|ref|ZP_06112038.2| putative RibD domain protein [Clostridium hathewayi DSM 13479]
 gi|288869403|gb|EFD01702.1| putative RibD domain protein [Clostridium hathewayi DSM 13479]
          Length = 217

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 4/131 (3%)

Query: 206 ELTCRLNGLQEHSPMR-IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
           +L          SP+  ++LD H       +         V+I      P  A +    N
Sbjct: 56  KLGVNEKEFPSKSPVSFVLLDNHHLTEHGVRYFCEWSKEFVLITQNPVHP--AFSVTADN 113

Query: 265 INIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           ++II  D  DL   L +L    G   L ++ G  +   F+ ++L+D I +  + ++IG  
Sbjct: 114 LHIIKQDSLDLADALKVLEEEYGCKRLTIQSGGTLNGLFLRNKLIDYIDIVVAPVLIGGK 173

Query: 324 GIPSPLEEGYL 334
            I + ++   +
Sbjct: 174 DISTLIDGSSI 184


>gi|89897671|ref|YP_521158.1| hypothetical protein DSY4925 [Desulfitobacterium hafniense Y51]
 gi|219670820|ref|YP_002461255.1| CMP/dCMP deaminase zinc-binding [Desulfitobacterium hafniense
           DCB-2]
 gi|89337119|dbj|BAE86714.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219541080|gb|ACL22819.1| CMP/dCMP deaminase zinc-binding [Desulfitobacterium hafniense
           DCB-2]
          Length = 155

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 44/134 (32%), Gaps = 39/134 (29%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D  FM  A   +     L      V  +IVKD  ++  G                   
Sbjct: 8   SWDEYFMQMAQVVAGRSTCLRR---QVGAVIVKDKQILSTGYNGSPTGLSHCAQKGCLRQ 64

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                    T      HAE  AL +A   G    GA  Y T +PC        C + +I 
Sbjct: 65  QLGIPSGERTEICRAVHAEQNALVQAAKHGVSINGADIYTTFQPC------VLCTKLLIN 118

Query: 95  CGIRRVVVCVDDPD 108
            GI+RV      PD
Sbjct: 119 AGIKRVFFLYPYPD 132


>gi|332157817|ref|YP_004423096.1| dCMP deaminase, putative [Pyrococcus sp. NA2]
 gi|331033280|gb|AEC51092.1| dCMP deaminase, putative [Pyrococcus sp. NA2]
          Length = 182

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 50/146 (34%), Gaps = 32/146 (21%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG---------------- 50
           D  FM  A   S      T     V  + VKDG ++  G                     
Sbjct: 23  DEYFMLIAKLVSLRA---TCPRLRVGAVAVKDGYILATGYNGAPRNMDHCIDVGCIMVDG 79

Query: 51  ---GCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                 HAE   +  A   G    GAT YVT  PC        C + +I  GI+ +V   
Sbjct: 80  HCHRAVHAEQNVIAMAARKGISLEGATLYVTHFPCD------TCLKLLINAGIKEIVYEE 133

Query: 105 DDPDVRVSGRGLQWLSQKGIIVDRMM 130
             P+  V+   L+   +KG+I  R  
Sbjct: 134 MYPN-EVTEMLLKEAQEKGLIKIRQF 158


>gi|313206907|ref|YP_004046084.1| cmp/dcmp deaminase zinc-binding protein [Riemerella anatipestifer
           DSM 15868]
 gi|312446223|gb|ADQ82578.1| CMP/dCMP deaminase zinc-binding protein [Riemerella anatipestifer
           DSM 15868]
 gi|325335656|gb|ADZ11930.1| Deoxycytidylate deaminase [Riemerella anatipestifer RA-GD]
          Length = 143

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 56/146 (38%), Gaps = 32/146 (21%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-----------YGGCP- 53
           FD  ++  A  +++           V  LIVKD  +I  G                G   
Sbjct: 7   FDIAYLKMAQEWAKLSYCKRK---QVGALIVKDRTIISDGYNGTPSGLENCCEDEQGQTK 63

Query: 54  ----HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               HAE  A   L    + A GAT Y+TL PC        C++ I + GI+R+V     
Sbjct: 64  WYVLHAEANAILKLARTTQTAEGATLYLTLSPCKE------CSKLIYQSGIKRLVYIDHY 117

Query: 107 PDVRVSGRGLQWLSQKGIIVDRMMES 132
            D      GL +L   G+ V ++ + 
Sbjct: 118 SD----EEGLTFLKNAGVEVTQIPQD 139


>gi|313902768|ref|ZP_07836165.1| tRNA-adenosine deaminase [Thermaerobacter subterraneus DSM 13965]
 gi|313466888|gb|EFR62405.1| tRNA-adenosine deaminase [Thermaerobacter subterraneus DSM 13965]
          Length = 200

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 15/101 (14%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            V  + V    +I RG            HAE+  L EA     G    G T YVTLEPC 
Sbjct: 49  PVGAVAVYQDAIIARGHNLRERLGDPTAHAEILVLREAAARLGGWRLEGVTLYVTLEPC- 107

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                P CA  I+   + R+V    DP    +G  +  +  
Sbjct: 108 -----PMCAGAIVLARVPRLVYGARDPKAGAAGSLMNLVQH 143


>gi|126653876|ref|ZP_01725723.1| late competence protein ComEB [Bacillus sp. B14905]
 gi|126589601|gb|EAZ83740.1| late competence protein ComEB [Bacillus sp. B14905]
          Length = 189

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 58/160 (36%), Gaps = 34/160 (21%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
           M   ++D  FM+ +   +      T T  +V   +V+D  +I  G               
Sbjct: 1   MERITWDQFFMAQSHLLALRS---TCTRLAVGATVVRDKRIIAGGYNGSITGDEHCIEKG 57

Query: 47  -----TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G   +GA  YVT  PC       PC + II+ GI 
Sbjct: 58  CYVVDNHCVRTVHAEMNALLQCAKYGTPTKGADLYVTHFPCL------PCTKSIIQAGIE 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138
           RV    D  +   +    +   + G+ V  +   E KI  
Sbjct: 112 RVCYATDYKNNPYAQ---ELFEKAGVTVVHVPFDERKIDF 148


>gi|295706661|ref|YP_003599736.1| ComE operon protein [Bacillus megaterium DSM 319]
 gi|37650595|emb|CAD69019.1| ComEB protein [Bacillus megaterium]
 gi|294804320|gb|ADF41386.1| ComE operon protein [Bacillus megaterium DSM 319]
          Length = 188

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 59/161 (36%), Gaps = 34/161 (21%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
           M   S+D  FM+ +   +      T    +V   +V+D  +I  G      GG       
Sbjct: 1   MNRISWDQYFMAQSHLLALRS---TCERLAVGATVVRDKRIIAGGYNGSISGGVHCADEG 57

Query: 52  ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAEV AL +    G +   A  YVT  PC +      C + +I+ GI+
Sbjct: 58  CYVIDGHCVRTVHAEVNALLQCAKFGVKTEDAEVYVTHFPCLN------CCKALIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
            V    D  +   +   ++   Q G+   ++   +  I L 
Sbjct: 112 TVYYANDYKNHPYA---VELFQQAGVKTAKVELDDAIIDLK 149


>gi|260549627|ref|ZP_05823845.1| guanine deaminase [Acinetobacter sp. RUH2624]
 gi|260407420|gb|EEX00895.1| guanine deaminase [Acinetobacter sp. RUH2624]
          Length = 160

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 39/110 (35%), Gaps = 21/110 (19%)

Query: 10  FMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
           F+  AL  +        G          +IVKDG VI  GV           HAE+ A+ 
Sbjct: 7   FLRQALELAYHNVEKG-GR-----PFGAVIVKDGKVIASGVNQILTTNDPTAHAELLAIR 60

Query: 62  EAGEEARGATAYVTLEPCSHYGRS---PPCAQFIIECGIRRVVVCVDDPD 108
            A +    A     LE CS +      P C   +   GI+ V     + D
Sbjct: 61  AASQVLGTA----NLEGCSVFASGHPCPMCMAAMRLAGIKTVHYAYSNED 106


>gi|295107524|emb|CBL05067.1| Deoxycytidylate deaminase [Gordonibacter pamelaeae 7-10-1-b]
          Length = 153

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 49/150 (32%), Gaps = 43/150 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D  FM  A   +      T     V  +IVKD  ++  G                   
Sbjct: 10  SWDEYFMKLANEVATR---TTCMRRGVGAVIVKDRRILATGYNGVPTGMRHCAETGCLRQ 66

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G    GA+ YV  +PC        CA+ +I 
Sbjct: 67  QLGVPSGQRHEICRGLHAEQNAIIQAARYGINITGASIYVNTQPC------VVCAKMLIN 120

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            GI  +V     PD       +  L + G+
Sbjct: 121 AGIEEIVYQNPYPD----ELAMSMLEEAGM 146


>gi|163784431|ref|ZP_02179312.1| Cytosine/adenosine deaminase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880298|gb|EDP73921.1| Cytosine/adenosine deaminase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 146

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 17/103 (16%)

Query: 15  LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR-- 68
           +  ++           V  LIV++G +I +G            HAE+ A+E+A ++ +  
Sbjct: 10  IEEAKKA--YKKDEVPVGALIVRNGEIISKGHNQRITKNNALYHAEIVAIEKACKKLKSW 67

Query: 69  ---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                  +V+LEPC        CA  I++  I++V     D  
Sbjct: 68  RLDDCEIWVSLEPC------VMCAGAIMQSRIKKVYFLAQDEK 104


>gi|88812724|ref|ZP_01127970.1| guanine deaminase [Nitrococcus mobilis Nb-231]
 gi|88789962|gb|EAR21083.1| guanine deaminase [Nitrococcus mobilis Nb-231]
          Length = 156

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 38/113 (33%), Gaps = 20/113 (17%)

Query: 8   ARFMSAALRFS--RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
           A FM  A+  S  +   G+         +IV DG V+  G            HAEV A+ 
Sbjct: 4   AAFMRRAIDLSYEKMIAGIGGP---FGAVIVHDGCVVAEGWNRVWSAMDPTAHAEVVAIR 60

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
            A       +    + Y + EPC      P C   I    ++ +       D 
Sbjct: 61  RACRILETYQLADCSIYTSCEPC------PMCLGAIYWARLQVIYYANTRDDA 107


>gi|297529318|ref|YP_003670593.1| ComE operon protein 2 [Geobacillus sp. C56-T3]
 gi|297252570|gb|ADI26016.1| ComE operon protein 2 [Geobacillus sp. C56-T3]
          Length = 156

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 58/151 (38%), Gaps = 34/151 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------ 53
           M   ++D  FM+ +   +      T T  +V   IV+D  +I  G      G        
Sbjct: 1   MERITWDQYFMAQSHLLALRS---TCTRLAVGATIVRDKRIIAGGYNGSIAGGAHCTDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A+ +    G    GA  YVT  PC H      C + II+ GIR
Sbjct: 58  CYVIDGHCVRTIHAEMNAILQCAKFGVPTEGAEMYVTHFPCLH------CCKAIIQSGIR 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            V    D  +   +   L+  +Q G+ + ++
Sbjct: 112 AVYYAQDYKNHPYA---LELFAQAGVRLVQV 139


>gi|284028320|ref|YP_003378251.1| CMP/dCMP deaminase zinc-binding protein [Kribbella flavida DSM
           17836]
 gi|283807613|gb|ADB29452.1| CMP/dCMP deaminase zinc-binding protein [Kribbella flavida DSM
           17836]
          Length = 144

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 42/122 (34%), Gaps = 18/122 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG----CPHAEVQALEEAGE 65
           M  AL  +    G       +  ++V   G VIGRG            HAEV A+  A  
Sbjct: 1   MELALAEAEHARGSADV--PIGAVVVDAGGEVIGRGHNEREATGDPTAHAEVLAIRAAAR 58

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                   G T  VTLEPC        CA  I+   + R+V    D      G     + 
Sbjct: 59  HVGEWRLTGCTLVVTLEPC------TMCAGAIVLSRLDRLVFAAYDEKAGAVGSLWDVVR 112

Query: 121 QK 122
            +
Sbjct: 113 DR 114


>gi|283470867|emb|CAQ50078.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus ST398]
          Length = 153

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 51/148 (34%), Gaps = 34/148 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M    ++  FM+ +   +           SV   IVKD  +I  G               
Sbjct: 1   MERIKWEEYFMAQSHLLALRSTCQRL---SVGATIVKDNRIIAGGYNGSVAGEVHCIDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G     AT YVT  PC +      C + II+ GI+
Sbjct: 58  CLIEDGHCIRTIHAEMNALLQCAKQGVSTEDATIYVTHFPCLN------CTKSIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           R+    D  +   + +    L Q GI  
Sbjct: 112 RIYYAEDYHNHEYATK---LLKQSGIEF 136


>gi|294647204|ref|ZP_06724803.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides ovatus SD CC 2a]
 gi|294809184|ref|ZP_06767900.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides xylanisolvens SD CC 1b]
 gi|292637491|gb|EFF55910.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides ovatus SD CC 2a]
 gi|294443578|gb|EFG12329.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 145

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 49/146 (33%), Gaps = 17/146 (11%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
            D  FM  AL  +            V  ++V    +I R      T      HAE+Q + 
Sbjct: 3   DDIYFMKQALIEA--GKAAERGEVPVGAVVVCKERIIARAHNLTETLNDVTAHAEMQVIT 60

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A     G+     T YVT+EPC        CA  I      ++V   +D          
Sbjct: 61  AAANVLGGKYLNECTLYVTVEPC------VMCAGAIAWAQTGKLVFGAEDEKRGYQKYAG 114

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYL 142
             L  K ++V  +M  E    +  + 
Sbjct: 115 SALHPKTVVVKGIMADECAALMKEFF 140


>gi|281424156|ref|ZP_06255069.1| cytidine/deoxycytidylate deaminase family protein [Prevotella oris
           F0302]
 gi|281401717|gb|EFB32548.1| cytidine/deoxycytidylate deaminase family protein [Prevotella oris
           F0302]
          Length = 159

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 56/149 (37%), Gaps = 38/149 (25%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
            D R++  A  ++     L      V  L+VKD ++I  G     G P            
Sbjct: 19  LDNRYLRMARIWAENSYCLRR---QVGALVVKDKMIISDGY---NGTPSGFDNVCEDANQ 72

Query: 54  -------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A   L  +   + G+T YVT  PC        CA+ II+ GIRRVV  
Sbjct: 73  ATFPYVLHAEANAITKLARSSNNSDGSTLYVTASPCIE------CAKLIIQAGIRRVVYA 126

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
                      G+  L + GI V  M + 
Sbjct: 127 EKYRL----EDGIHLLCKAGIEVIYMEQK 151


>gi|224540782|ref|ZP_03681321.1| hypothetical protein BACCELL_05696 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224517611|gb|EEF86716.1| hypothetical protein BACCELL_05696 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 155

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 36/113 (31%), Gaps = 17/113 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
              M  A+  S  +V           +I KDG +I  G            HAEV A+  A
Sbjct: 4   EELMRKAIELSTENVANGGG--PFGAVIAKDGEIIATGTNRVTSSCDPTAHAEVSAIRAA 61

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
                     G   Y + EPC      P C   I    + ++    +  D + 
Sbjct: 62  ATSLGTFNLSGCEIYTSCEPC------PMCLGAIYWARLDKMYYGNNKTDAKN 108


>gi|145347025|ref|XP_001417980.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578208|gb|ABO96273.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 173

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 54/166 (32%), Gaps = 34/166 (20%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE---VQALEEA 63
           M  AL  +R  +      P   C + +DG ++  G  A      G  HAE   V AL +A
Sbjct: 1   MRVALAQARLAL-DEWEVPC-GCALARDGEIVAVGRNATNRTRNGTRHAEFEAVDALLDA 58

Query: 64  GEEARGA------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
               R A      T YVT EPC        CA  +   G+R VV    +     +G  L 
Sbjct: 59  HGGDRAACRFEDVTLYVTCEPC------VMCAGAMSALGVREVVYGCANDKFGGAGTVLD 112

Query: 118 WLSQKGIIVD-------------RMMESEGKIFLHAYLTRQVEKRS 150
             ++                    + E E       +  R   K  
Sbjct: 113 AHARGCGACGGAGGVGKPYDARGGLFEREAIEMFQEFYVRGNPKAP 158


>gi|299770668|ref|YP_003732694.1| guanine deaminase (Guanase) (guanine aminase) (guanine
           aminohydrolase) (GAH) (GDEase) [Acinetobacter sp. DR1]
 gi|298700756|gb|ADI91321.1| guanine deaminase (Guanase) (guanine aminase) (guanine
           aminohydrolase) (GAH) (GDEase) [Acinetobacter sp. DR1]
          Length = 160

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 25/114 (21%)

Query: 8   ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
            +F+  A+  +        G          ++VK+G VI  GV           HAE+ A
Sbjct: 5   EQFLRNAIELAYNNIEKG-GR-----PFGAVVVKNGEVIASGVNQILTTNDPTAHAELLA 58

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           +  A +        G + Y +  PC      P C   +   GI+ V     + D
Sbjct: 59  IRAASQILGSANLEGCSVYASGHPC------PMCMAAMRLAGIKSVSYAYSNED 106


>gi|198276275|ref|ZP_03208806.1| hypothetical protein BACPLE_02467 [Bacteroides plebeius DSM 17135]
 gi|198270717|gb|EDY94987.1| hypothetical protein BACPLE_02467 [Bacteroides plebeius DSM 17135]
          Length = 155

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 38/111 (34%), Gaps = 17/111 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
              M  A+  S  +V           +I KDG ++  GV           HAEV A+  A
Sbjct: 4   EELMRKAIELSVKNVAEGGG--PFGAVIAKDGEIVATGVNRVTPDCDPTAHAEVSAIRAA 61

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
            +     +  G   Y + EPC      P C   I    + R+    +  D 
Sbjct: 62  AKKLGTFDLSGCEIYTSCEPC------PMCLGAIYWAHLDRMYYGNNKHDA 106


>gi|57651981|ref|YP_186485.1| comE operon protein 2 [Staphylococcus aureus subsp. aureus COL]
 gi|87160601|ref|YP_494243.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195398|ref|YP_500202.1| hypothetical protein SAOUHSC_01692 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148268072|ref|YP_001247015.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus JH9]
 gi|150394141|ref|YP_001316816.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus JH1]
 gi|221141140|ref|ZP_03565633.1| competence protein ComEB [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253315374|ref|ZP_04838587.1| competence protein ComEB [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|269203216|ref|YP_003282485.1| comE operon protein 2 [Staphylococcus aureus subsp. aureus ED98]
 gi|284024647|ref|ZP_06379045.1| competence protein ComEB [Staphylococcus aureus subsp. aureus 132]
 gi|57286167|gb|AAW38261.1| comE operon protein 2 [Staphylococcus aureus subsp. aureus COL]
 gi|87126575|gb|ABD21089.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202956|gb|ABD30766.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147741141|gb|ABQ49439.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus JH9]
 gi|149946593|gb|ABR52529.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus JH1]
 gi|262075506|gb|ACY11479.1| comE operon protein 2 [Staphylococcus aureus subsp. aureus ED98]
 gi|302333265|gb|ADL23458.1| deoxycytidylate deaminase ComEB [Staphylococcus aureus subsp.
           aureus JKD6159]
 gi|315129867|gb|EFT85857.1| possible competence protein ComEB [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315198714|gb|EFU29042.1| possible competence protein ComEB [Staphylococcus aureus subsp.
           aureus CGS01]
          Length = 143

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 44/119 (36%), Gaps = 31/119 (26%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGCP-------------------HAEVQALEEA---GEEA 67
           SV   IVKD  +I  G                           HAE+ AL +    G   
Sbjct: 17  SVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGHCIRTIHAEMNALLQCAKQGVST 76

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            GAT YVT  PC +      C + II+ GI+R+    D  +   + +    L Q GI  
Sbjct: 77  EGATIYVTHFPCLN------CTKSIIQAGIKRIYYAEDYHNHEYATK---LLKQSGIEF 126


>gi|332876785|ref|ZP_08444543.1| guanine deaminase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332685344|gb|EGJ58183.1| guanine deaminase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 155

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 38/115 (33%), Gaps = 25/115 (21%)

Query: 8   ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQA 59
             FM  A+  S    +   G          +IVK   ++  GV           HAEV A
Sbjct: 4   KEFMRKAIELSVENVKNGGG------PFGAVIVKGDEIVATGVNRVTAHNDPTAHAEVSA 57

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           + EA       +  G   Y + EPC      P C   I    + ++    +  D 
Sbjct: 58  IREACRRLGTFDLSGCEIYTSCEPC------PMCLGAIYWAHLDKIYYGNNKDDA 106


>gi|311742000|ref|ZP_07715810.1| cytidine and deoxycytidylate deaminase [Aeromicrobium marinum DSM
           15272]
 gi|311314493|gb|EFQ84400.1| cytidine and deoxycytidylate deaminase [Aeromicrobium marinum DSM
           15272]
          Length = 149

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 49/122 (40%), Gaps = 18/122 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT--AYGGCP--HAEVQALEEAGE 65
           M  AL  +R  +  T   P V  +++   G VIGRG       G P  HAEV AL EA E
Sbjct: 7   MRLALEEARAAL-DTGDVP-VGAVVLDPAGDVIGRGRNTRERDGDPLGHAEVVALREAAE 64

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                   G T  VTLEPC        CA  ++   + R+V    D      G     + 
Sbjct: 65  RTGQWRLEGCTLVVTLEPC------TMCAGALVGARVDRLVFGAWDDKAGAVGSLWDVVR 118

Query: 121 QK 122
            +
Sbjct: 119 DR 120


>gi|108804483|ref|YP_644420.1| CMP/dCMP deaminase [Rubrobacter xylanophilus DSM 9941]
 gi|108765726|gb|ABG04608.1| CMP/dCMP deaminase, zinc-binding protein [Rubrobacter xylanophilus
           DSM 9941]
          Length = 157

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 45/139 (32%), Gaps = 35/139 (25%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           S+D  FM  A   +      T    +V  ++V+D  ++  G                   
Sbjct: 14  SWDEYFMRIAHEVATRS---TCPRLAVGAVVVRDRRILTTGYNGSPSGMPHCDEVGCLIR 70

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE  AL +A   G   R A  Y T +PC        C + I+  GIR
Sbjct: 71  VVDGRESCQRTLHAEQNALIQAAYHGVSVRDAAMYCTHQPCL------LCVKMIMNSGIR 124

Query: 99  RVVVCVDDPDVRVSGRGLQ 117
            V      PD   +    +
Sbjct: 125 EVYYAGGYPDPLATELAAE 143


>gi|315023983|gb|EFT36985.1| dCMP deaminase [Riemerella anatipestifer RA-YM]
          Length = 143

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 56/146 (38%), Gaps = 32/146 (21%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-----------YGGCP- 53
           FD  ++  A  +++           V  LIVKD  +I  G                G   
Sbjct: 7   FDIAYLKMAQEWAKLSYCKRK---QVGALIVKDRTIISDGYNGTPSGLENCCEDEQGQTK 63

Query: 54  ----HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               HAE  A   L    + A GAT Y+TL PC        C++ I + GI+R+V     
Sbjct: 64  WYVLHAEANAILKLARTTQTAEGATLYLTLSPCKE------CSKLIYQSGIKRLVYIDHY 117

Query: 107 PDVRVSGRGLQWLSQKGIIVDRMMES 132
            D      GL +L   G+ V ++ + 
Sbjct: 118 SD----EEGLTFLKNAGVEVTQITQD 139


>gi|227824235|ref|ZP_03989067.1| dCMP deaminase [Acidaminococcus sp. D21]
 gi|226904734|gb|EEH90652.1| dCMP deaminase [Acidaminococcus sp. D21]
          Length = 153

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 48/138 (34%), Gaps = 39/138 (28%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
           M    +D+ FM  A   ++    L      V  ++VKD  ++  G               
Sbjct: 1   MKRPDWDSYFMEIAEVVAKRSTCLRR---QVGAVLVKDRQILATGYNGTPKGIAHCEEVG 57

Query: 47  -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE  A+ +A   G   +GAT Y T +PC        C++
Sbjct: 58  CLREQLHVPSGQNHELCRGIHAEQNAVIQAAVNGVSTKGATLYCTHQPC------VVCSK 111

Query: 91  FIIECGIRRVVVCVDDPD 108
            +I  GI R+V     PD
Sbjct: 112 ILINAGIERIVYAHPYPD 129


>gi|120609775|ref|YP_969453.1| CMP/dCMP deaminase [Acidovorax citrulli AAC00-1]
 gi|120588239|gb|ABM31679.1| CMP/dCMP deaminase, zinc-binding protein [Acidovorax citrulli
           AAC00-1]
          Length = 169

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 49/141 (34%), Gaps = 18/141 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----CPHAE 56
           P+   D R++  A+  +         N     +IV  DG V+     A G       HAE
Sbjct: 11  PLDERDGRYLRHAIALADKARAR--GNRPFGAVIVGGDGTVLAEAWNANGETGDCTAHAE 68

Query: 57  VQALE-----EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
             A+       A E    AT Y + EPC        CA  I    I RVV  +D   +R 
Sbjct: 69  TSAIRVASPQHAREVLARATLYSSGEPC------VMCAGAIFWANIGRVVYGIDAVRLRG 122

Query: 112 SGRGLQWLSQKGIIVDRMMES 132
                Q      +    + ++
Sbjct: 123 FRGERQDQRDAELSCRDVFDA 143


>gi|19551479|ref|NP_599481.1| cytosine/adenosine deaminase [Corynebacterium glutamicum ATCC
           13032]
 gi|145294347|ref|YP_001137168.1| hypothetical protein cgR_0302 [Corynebacterium glutamicum R]
 gi|140844267|dbj|BAF53266.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 159

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 51/153 (33%), Gaps = 25/153 (16%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGG----CPHAEVQAL 60
            D R M  AL  +R        +  V  +I    G ++               HAE+ AL
Sbjct: 12  DDERRMRHALDIARQ---TPEGDVPVGAVIYAPTGEILATATNRREADRDPTAHAEIIAL 68

Query: 61  EEA------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
             A      G      TA VTLEPCS       CA  ++   I R+V    +P     G 
Sbjct: 69  RRAARRFSDGWRLSDCTAVVTLEPCSM------CAGALVGARIGRIVFGAFEPRTGACGS 122

Query: 115 GLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
               +    +     +   ++E E    +  + 
Sbjct: 123 VFDVVRDPAVLHKVEVSGGILEPECAALMTEFF 155


>gi|39934239|ref|NP_946515.1| CMP/dCMP deaminase zinc-binding [Rhodopseudomonas palustris CGA009]
 gi|192289765|ref|YP_001990370.1| CMP/dCMP deaminase zinc-binding [Rhodopseudomonas palustris TIE-1]
 gi|39648087|emb|CAE26607.1| possible cytidine and deoxycytidylate deaminase [Rhodopseudomonas
           palustris CGA009]
 gi|192283514|gb|ACE99894.1| CMP/dCMP deaminase zinc-binding [Rhodopseudomonas palustris TIE-1]
          Length = 148

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 48/127 (37%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            + C+IV+DG+VI +      T      HAE+ A+ EA      E       YVTLEPC 
Sbjct: 24  PIGCVIVRDGVVIAKAGNRTLTDRDPTAHAELLAIREAAAKLGSERLVDCDLYVTLEPC- 82

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGK 135
                  CA  I    IRR+     DP       G+++           +   + E E  
Sbjct: 83  -----TMCAGAISFARIRRLYFGAFDPKGGAVESGVRFYGQPTCHHAPEVYSAVGEREAA 137

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 138 TMLREFF 144


>gi|238063563|ref|ZP_04608272.1| hypothetical protein MCAG_04529 [Micromonospora sp. ATCC 39149]
 gi|237885374|gb|EEP74202.1| hypothetical protein MCAG_04529 [Micromonospora sp. ATCC 39149]
          Length = 259

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 55/163 (33%), Gaps = 10/163 (6%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT-------- 199
            R H+ +    S D  + +    S  ++G   K    LLR   D +LV  GT        
Sbjct: 31  DRPHLRVNFVTSVDGAVSL-DGYSAGLSGEPDKRVFGLLRMLCDGLLVAAGTLRHEGYRA 89

Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
           V  D P    R        P  +++     L         A + PV++     +    LA
Sbjct: 90  VRLDAPRRAWRREHGLAEYPTLVVVSGSLDLDPAQAAFADAPVRPVVLTHAAAEAPPRLA 149

Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
              + +     D  DL   L    G     +L EGG  +  +F
Sbjct: 150 EVAELVRC-GADRVDLAAGLASCAGAAFGQVLCEGGRTLFGAF 191


>gi|299139283|ref|ZP_07032459.1| Guanine deaminase [Acidobacterium sp. MP5ACTX8]
 gi|298598963|gb|EFI55125.1| Guanine deaminase [Acidobacterium sp. MP5ACTX8]
          Length = 157

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 39/126 (30%), Gaps = 24/126 (19%)

Query: 9   RFMSAALRFSR----WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
            FM  A++ +        G          ++VKDG VI  G            HAEV A+
Sbjct: 6   EFMQQAIQLATDNVVSGRGG-----PFGAVVVKDGKVIATGANQVTATNDPTAHAEVTAI 60

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A       +  G   Y + EPC      P C   +     R +       D    G  
Sbjct: 61  RNACTALGHFQLDGCDVYSSCEPC------PMCLAALYWSRCRAIYYGNSAADAAKVGFD 114

Query: 116 LQWLSQ 121
              L +
Sbjct: 115 DSRLYE 120


>gi|328954698|ref|YP_004372031.1| tRNA-adenosine deaminase [Coriobacterium glomerans PW2]
 gi|328455022|gb|AEB06216.1| tRNA-adenosine deaminase [Coriobacterium glomerans PW2]
          Length = 165

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 50/152 (32%), Gaps = 22/152 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
             DARFM  AL  +R    L      +   +V +G  I R             HAE  A+
Sbjct: 13  PDDARFMREALAQARMAAEL--GEVPIGAAVVYEGDCIARAHNRRELDGNPSAHAEFVAM 70

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A          G T YVT+EPC        CA  ++   I R V    DP     G  
Sbjct: 71  LKASAVLGRWRLTGCTVYVTVEPCLM------CAGLMVNARIDRCVFGASDPKGGALGTL 124

Query: 116 LQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
                   L+    +   +   E    L  + 
Sbjct: 125 FDVSRDPRLNHAFGVTRDVEREECSDLLTTFF 156


>gi|255283483|ref|ZP_05348038.1| RibD domain protein [Bryantella formatexigens DSM 14469]
 gi|255265940|gb|EET59145.1| RibD domain protein [Bryantella formatexigens DSM 14469]
          Length = 226

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 56/142 (39%), Gaps = 16/142 (11%)

Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMR-IILDPHFKLSLDSKIIKTALLAPVIIVTENDD 253
           +G+ T  AD P  T          P+  +++D         +         V+I +  + 
Sbjct: 66  IGVNT--ADMPAKT----------PVSFVVIDNKHLTEHGIRYFCALSKQFVLITSNKNH 113

Query: 254 PVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
           P  A    + N++IIY +    +  L  L    G   + ++ G  +   F+  +L+D + 
Sbjct: 114 P--AFEMEEDNLHIIYQNELSPEDALARLKADYGCERITIQTGGTLNGLFLREKLIDFVD 171

Query: 313 LYRSQIVIGEGGIPSPLEEGYL 334
           +  + +++G     + ++   L
Sbjct: 172 IVVAPVLVGGKDTATLIDGKSL 193


>gi|238496847|ref|XP_002379659.1| DRAP deaminase, putative [Aspergillus flavus NRRL3357]
 gi|220694539|gb|EED50883.1| DRAP deaminase, putative [Aspergillus flavus NRRL3357]
          Length = 222

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 55/165 (33%), Gaps = 35/165 (21%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK---------DGIVIGRGVTAY-GGC 52
           + S  A+++   L  +        TN  V  ++V          D  ++  G T    G 
Sbjct: 1   MQSPHAKYLRECLSLAEKSPPR-PTNFRVGAILVSRKEGDYKTEDDRIVSTGYTMELAGN 59

Query: 53  PHAEVQALEEA----------------GEEARGATAYVTLEPCS-HYGRSPPCAQFI--- 92
            HAE   L                    E  R    YVT+EPC      + PC Q I   
Sbjct: 60  THAEQCCLSNYAAVHSVPEDRVWEVLPSEPDRKLVMYVTMEPCGKRLSGNLPCVQRIIRT 119

Query: 93  ---IECGIRRVVVCVDDPDVRVSGRG-LQWLSQKGIIVDRMMESE 133
                 GI++V   V +P   V G    Q L+  GI    +   E
Sbjct: 120 RQGDRKGIQKVYFGVKEPGTFVGGSEGCQMLTAAGIDWQVVNGLE 164


>gi|332974309|gb|EGK11241.1| guanine deaminase [Desmospora sp. 8437]
          Length = 146

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 48/142 (33%), Gaps = 20/142 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
            R+M  A+  +  +V      P    +IV++G VI  GV           HAE+QA+ EA
Sbjct: 4   KRWMQQAMDLAAENVSRHRGEP-FGAVIVREGEVIATGVNETGKIQDPTAHAEIQAIREA 62

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
             +           + + EPCS       C   I   G R V               L  
Sbjct: 63  CRKLGKTVLDDCEMFASGEPCSM------CMGAIQWAGFRAVWFAA----AMEESERLGL 112

Query: 119 LSQKGIIVDRMMESEGKIFLHA 140
              KG+ +  + + E       
Sbjct: 113 KPAKGVDMIPVQKLEMNDREKH 134


>gi|325264269|ref|ZP_08131000.1| putative deoxycytidylate deaminase [Clostridium sp. D5]
 gi|324030340|gb|EGB91624.1| putative deoxycytidylate deaminase [Clostridium sp. D5]
          Length = 162

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 53/152 (34%), Gaps = 35/152 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
           S+D  FM  A+      +     N  V C IV  D  ++  G                  
Sbjct: 10  SWDEYFMGVAM---LSGMRSKDPNTQVGCCIVSPDNKILSMGYNGFPIGCSDDEFPWARE 66

Query: 47  ------TAYGGCPHAEVQALEE-AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    H+E+ A+    G    GA  YV+L PC+       CA+ II+ GI+ 
Sbjct: 67  GDDPLETKYVYSTHSELNAILNYNGGSLAGAKLYVSLFPCNE------CAKAIIQSGIKE 120

Query: 100 VVVCVDDP-DVRVSGRGLQWLSQKGIIVDRMM 130
           V+   D   D        + +   G+   +  
Sbjct: 121 VIYDCDKYADTPAVLASKRMMDAAGVRYHQYH 152


>gi|308491803|ref|XP_003108092.1| hypothetical protein CRE_10287 [Caenorhabditis remanei]
 gi|308248940|gb|EFO92892.1| hypothetical protein CRE_10287 [Caenorhabditis remanei]
          Length = 171

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 61/169 (36%), Gaps = 24/169 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQAL 60
             D RF+  A   ++    L      V C+ V DG  IG+G       G P  HAE+ A+
Sbjct: 7   DNDRRFLECAFNLAQEA--LDGDEVPVGCVFVVDGKEIGKGRNRVNETGDPTRHAEMVAV 64

Query: 61  --------EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
                   EE  +  R A  YV+LEPC        C+  + + GIR++V   ++P     
Sbjct: 65  TEMWKKYGEECKDFLRRAVLYVSLEPCIM------CSSAMYQLGIRKMVYGAENPRFGGV 118

Query: 113 GRGLQ----WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
                     +     IV  +        L ++  +Q         K  
Sbjct: 119 RSVGNAEKYRMEDNIQIVSNVWSDRSVAMLKSFYEKQNPFAPPEKRKTK 167


>gi|297200779|ref|ZP_06918176.1| deaminase [Streptomyces sviceus ATCC 29083]
 gi|297147728|gb|EDY56383.2| deaminase [Streptomyces sviceus ATCC 29083]
          Length = 162

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 56/148 (37%), Gaps = 26/148 (17%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DG-IVIGRGVTAYGG----CPHAEVQALEEAG 64
           M  AL  +    G   T+  V  +++  DG  V+  G            HAEV A+  A 
Sbjct: 22  MRLALDEA----GRAGTDVPVGAVVLSPDGTTVLAAGHNEREAVGDPTAHAEVLAIRRAA 77

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-- 117
                    G T  VTLEPC        CA  I++  + RVV    D     +G      
Sbjct: 78  AELGEWRLTGCTLVVTLEPC------TMCAGAIVQSRVDRVVYGARDEKAGAAGSLWDVV 131

Query: 118 ---WLSQKGIIVDRMMESEGKIFLHAYL 142
               L+ +  +V+ ++ +E    L A+ 
Sbjct: 132 RDRRLNHRPEVVEGVLAAECAQLLTAFF 159


>gi|169607064|ref|XP_001796952.1| hypothetical protein SNOG_06585 [Phaeosphaeria nodorum SN15]
 gi|111065296|gb|EAT86416.1| hypothetical protein SNOG_06585 [Phaeosphaeria nodorum SN15]
          Length = 189

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 59/156 (37%), Gaps = 25/156 (16%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYG-GCPHAEVQ 58
           P  +   ++M  AL  ++      S N  V  L+V    G ++ RG T    G  HAE  
Sbjct: 22  PDPNNHLQYMLLALDQAQESPPKPS-NFRVGALLVDADTGAILSRGYTLECEGNTHAEQC 80

Query: 59  AL-----------EEAGEEARGAT-AYVTLEPCS-HYGRSPPCAQFIIEC-------GIR 98
            L           E  GE     T  Y T+EPC+     + PC   II          I+
Sbjct: 81  CLLKYAQAHDLPEERVGEALPPNTVIYTTMEPCNLRLSGNLPCVDRIIRTTSLNGDRTIK 140

Query: 99  RVVVCVDDPDVRVSGRG-LQWLSQKGIIVDRMMESE 133
           RV + V +P+  V      + L Q GI    +   E
Sbjct: 141 RVYLGVQEPEKFVGENEGRKKLEQYGIECIHVPGLE 176


>gi|320106996|ref|YP_004182586.1| CMP/dCMP deaminase zinc-binding protein [Terriglobus saanensis
           SP1PR4]
 gi|319925517|gb|ADV82592.1| CMP/dCMP deaminase zinc-binding protein [Terriglobus saanensis
           SP1PR4]
          Length = 171

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 21/128 (16%)

Query: 30  SVACLIVK-DGIVIGRGVTA--YGGCP--HAEVQALEEAGEEAR-----GATAYVTLEPC 79
            V  ++V   G ++ RG         P  HAE+ AL  AG         G + YVTLEPC
Sbjct: 27  PVGAIVVSPTGEILSRGQNRVIRDHDPSGHAEMVALRAAGVALENYRLTGCSLYVTLEPC 86

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEG 134
           +       CA  I+   I R+V    DP     G  L+      L+ +  +V  ++  E 
Sbjct: 87  AM------CAGAILHARIARLVYAAPDPKAGACGSALEVMNHPRLNHRCEVVAGVLADEC 140

Query: 135 KIFLHAYL 142
              L  + 
Sbjct: 141 STLLQTFF 148


>gi|254499275|ref|ZP_05111951.1| deaminase [Legionella drancourtii LLAP12]
 gi|254351519|gb|EET10378.1| deaminase [Legionella drancourtii LLAP12]
          Length = 143

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 58/150 (38%), Gaps = 23/150 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTA----YGGCPHAEVQALEEAGE 65
           M  A   +            V  ++V + G ++G    A    +    HAEV+ + +A +
Sbjct: 1   MQQAYEQAFLAQN--EGEVPVGAVLVSNEGELLGASRNAVQNSHDPSDHAEVRVIRQAAQ 58

Query: 66  EAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           + +       T YVTLEPC      P CA  I+   I+RVV    D     +G     L 
Sbjct: 59  QLKNHRLLDTTLYVTLEPC------PMCAGLIVHARIKRVVFATRDFKAGAAGSVYNLLQ 112

Query: 121 -----QKGIIVDRMMESEGKIFLHAYLTRQ 145
                 K  I + +M+SE  + L  +    
Sbjct: 113 GYPLNHKVQIDEGIMQSECALLLSDFFKAC 142


>gi|39938589|ref|NP_950355.1| cytosine/adenosine deaminase [Onion yellows phytoplasma OY-M]
 gi|39721698|dbj|BAD04188.1| cytosine/adenosine deaminase [Onion yellows phytoplasma OY-M]
          Length = 161

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 40/116 (34%), Gaps = 17/116 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEAG 64
            FM  AL+ ++           +  + V +  +I R             HAE  AL +AG
Sbjct: 10  FFMKEALKEAQKAYL--KEEVPIGAVAVLNQKIIARAHNNRNTKKLFFGHAEFLALMKAG 67

Query: 65  EE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           ++         + YVTLEPC        C   II+ GI+ +               
Sbjct: 68  KKINSRFLNDVSLYVTLEPCLM------CTGAIIQAGIKNLYYGTSMEKSYSFNDM 117


>gi|23499966|ref|NP_699406.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           suis 1330]
 gi|23463547|gb|AAN33411.1| cytidine and deoxycytidylate deaminase family protein [Brucella
           suis 1330]
          Length = 157

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 52/146 (35%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG-- 64
           M  AL  +    G     P +  +IV+DG +I R             HAE+  + +AG  
Sbjct: 16  MDIALEEAH-AAGERGEVP-IGAVIVRDGEIIARAGNRTREFNDVTAHAEILIIRQAGEM 73

Query: 65  ---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW--- 118
              E       YVTLEPC+       CA  I    IRR+     DP       G ++   
Sbjct: 74  LGSERLIDCDLYVTLEPCAM------CAAAISFARIRRLYYGASDPKGGGIEHGGRFYTQ 127

Query: 119 --LSQKGIIVDRMMESEGKIFLHAYL 142
                   I     E++ +  L  + 
Sbjct: 128 PTCHHAPEIYPGFCEADARKILKDFF 153


>gi|4580029|gb|AAD24212.1|AF086638_2 CumB [Pseudomonas putida GB-1]
          Length = 145

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQ-----ALEEAGEEARGATAYVTLEPCS 80
            V  ++V+ G VIG+G            HAE+      A   +     G+T YVTLEPCS
Sbjct: 18  PVGAVLVQHGQVIGQGFNRPIIDSDPSAHAEMVAIRAAAKAASNYRLPGSTLYVTLEPCS 77

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  CA  I+   + RVV    +P   +     Q     +L+ + I+   ++     
Sbjct: 78  M------CAGLIVHSRVMRVVFGALEPKAGIVQSQGQFFGQGFLNHRVIVEGGVLAEACG 131

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 132 QILSDFF 138


>gi|14591367|ref|NP_143445.1| deoxycytidylate deaminase [Pyrococcus horikoshii OT3]
 gi|3258018|dbj|BAA30701.1| 182aa long hypothetical deoxycytidylate deaminase [Pyrococcus
           horikoshii OT3]
          Length = 182

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 50/146 (34%), Gaps = 32/146 (21%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG---------------- 50
           D  FM  A   S      T     V  + VKDG ++  G                     
Sbjct: 23  DEYFMLIAKLVSLRA---TCPRLRVGAVAVKDGYILATGYNGAPRNMDHCIDVGCIMVDG 79

Query: 51  ---GCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                 HAE   +  A   G    GAT YVT  PC        C + +I  GI+ +V   
Sbjct: 80  HCHRAVHAEQNVIAMAARKGISLEGATLYVTHFPCD------TCLKLLINAGIKEIVYEE 133

Query: 105 DDPDVRVSGRGLQWLSQKGIIVDRMM 130
             P+  V+   L+   +KG+I  R  
Sbjct: 134 MYPN-EVTEMLLKEAQEKGLIKIRQF 158


>gi|313898562|ref|ZP_07832099.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase family protein
           [Clostridium sp. HGF2]
 gi|312956944|gb|EFR38575.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase family protein
           [Clostridium sp. HGF2]
          Length = 226

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 4/128 (3%)

Query: 209 CRLNGLQEHSPMR-IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
                    SP+  ++LD H       +         V+I      P  A   ++ N++I
Sbjct: 68  VNEEDFPAKSPVSFVLLDNHHLTEHGIRYFCQLSKEFVLITQNPAHP--AFLVKEDNLHI 125

Query: 268 IYCDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           I  D  DL   L IL    G + L V+ G  +   F+ ++L+D I +  + I+IG     
Sbjct: 126 IMQDTLDLVGALEILKEDYGCSRLTVQSGGTLNGLFLRNKLLDYIDIVVAPILIGGKDTA 185

Query: 327 SPLEEGYL 334
           + ++   +
Sbjct: 186 TLIDGASI 193


>gi|224536998|ref|ZP_03677537.1| hypothetical protein BACCELL_01874 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521365|gb|EEF90470.1| hypothetical protein BACCELL_01874 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 188

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 25/116 (21%)

Query: 8   ARFMSAALRFSRW----HVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQA 59
              M  A+  +        G          +I ++G +I  GV      +    HAEV A
Sbjct: 37  EELMRKAIVLAEENVDNGGG------PFGAVIARNGEIIATGVNRVTAEHDPTAHAEVSA 90

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           +  A +     +  G   Y + EPC      P C   I    I ++    D  D +
Sbjct: 91  IRAACKKLGTFDLSGCEIYTSCEPC------PMCLGAIYWAHIDKMYYGNDKADAK 140


>gi|152987783|ref|YP_001347042.1| hypothetical protein PSPA7_1658 [Pseudomonas aeruginosa PA7]
 gi|150962941|gb|ABR84966.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 180

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
           VL    R   +          +  L+ L  +G   + + GG ++A S + + L+D +I+ 
Sbjct: 74  VLTRNPRVSGLEGFELRHATPQDGLSRLGEQGCRRVWLAGGGSLAGSCLGAGLLDEVIVS 133

Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
               ++G G    PL  G  E+    + +  +
Sbjct: 134 VVPQLLGAG---IPLFAGGRERRLRLLEQHSY 162


>gi|257138794|ref|ZP_05587056.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           thailandensis E264]
          Length = 187

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 54/153 (35%), Gaps = 22/153 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQA 59
           +  D R+M   +  +       +    V  +IV+   VI RG     G      HAE+ A
Sbjct: 19  AERDRRYMR--IALAAAEEARAAGEVPVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAA 76

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           L  A          G   YVTLEPC        C+  I+   I RVV    DP     G 
Sbjct: 77  LRAAARALRNYRMPGCELYVTLEPCLM------CSGAIMHARIARVVFGAPDPKTGACGS 130

Query: 115 GLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
            +       L+    +   ++  E    L ++ 
Sbjct: 131 VVDAFADARLNHHTTVEGGVLADECGAALKSFF 163


>gi|3204108|emb|CAA07230.1| putative cytidine deaminase [Cicer arietinum]
          Length = 186

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 40/116 (34%), Gaps = 16/116 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
           V   D +F+  A+  +   V      P    +IV +  V+               HAEV 
Sbjct: 27  VQDRDHKFLRKAVEEAYKGVDCGDGGP-FGAVIVHNDEVVASCHNMVLNYTDPTAHAEVT 85

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           A+ EA ++ +         Y + EPC      P C   I    I+R+V        
Sbjct: 86  AIREACKKLKQIELSDCEIYASCEPC------PMCFGAIHLSRIKRLVYGAKAEAA 135


>gi|218961251|ref|YP_001741026.1| Cytosine/adenosine deaminase [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729908|emb|CAO80820.1| Cytosine/adenosine deaminase [Candidatus Cloacamonas
           acidaminovorans]
          Length = 155

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 53/148 (35%), Gaps = 21/148 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
           FM  A+  ++     T     V  L+VK+  +I +             H E   +++   
Sbjct: 12  FMQEAIAEAKKA--FTEDEIPVGALLVKNNTIILKEHNRSRQLANPLAHCEKLLIDKILT 69

Query: 66  EARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL-- 119
              G     T YVTLEPC        CA  II   I  VV    DP   V G     L  
Sbjct: 70  SEPGFLYDYTLYVTLEPCLM------CAGMIILSKIGTVVYGAKDPKAGVVGSLYNVLND 123

Query: 120 ---SQKGIIVDRMMESEGKIFLHAYLTR 144
              +   +++  ++E E    L  +  +
Sbjct: 124 KSFNHHPVVIGGILEQECAFLLEEFFHK 151


>gi|13471997|ref|NP_103564.1| riboflavin-specific deaminase [Mesorhizobium loti MAFF303099]
 gi|14022742|dbj|BAB49350.1| probable riboflavin-specific deaminase [Mesorhizobium loti
           MAFF303099]
          Length = 232

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 5/101 (4%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLL 279
           + LD   KL              V+++  +             ++ I  +    DL  +L
Sbjct: 89  VALDASGKLHFAKP--DVGGDHVVVLLGRDVADSHLAELAADGVSYIVSETAEIDLAAML 146

Query: 280 TILV-GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
            +L    G+  LL+EGGA +  SF  + LVD + L  +  +
Sbjct: 147 DVLGRELGIRRLLLEGGAGINGSFFAAGLVDELSLLVAPAL 187


>gi|153853661|ref|ZP_01995041.1| hypothetical protein DORLON_01032 [Dorea longicatena DSM 13814]
 gi|149753816|gb|EDM63747.1| hypothetical protein DORLON_01032 [Dorea longicatena DSM 13814]
          Length = 162

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 58/155 (37%), Gaps = 35/155 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
           S+D  FM  A + S   +     N  V C IV +D  ++  G                  
Sbjct: 10  SWDEYFMGVA-KLS--GMRSKDPNTQVGCCIVSQDNKILSMGYNGLPTGCSDDVFPWGRE 66

Query: 47  ------TAYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    H+E+ A+    G    GA  YV+L PC+       CA+ II+ GI+ 
Sbjct: 67  GDDPLETKYVYTVHSELNAILNYRGGSLEGAKLYVSLFPCNE------CAKAIIQSGIKE 120

Query: 100 VVVCVDDPDVRVSG-RGLQWLSQKGIIVDRMMESE 133
           V+   +  +   +    ++     G+   +   ++
Sbjct: 121 VIYDCNKYEGTAAVMASMKMFDAAGVNYHKYHRTD 155


>gi|83814096|ref|YP_445447.1| cytidine deaminase [Salinibacter ruber DSM 13855]
 gi|83755490|gb|ABC43603.1| probable cytidine deaminase [Salinibacter ruber DSM 13855]
          Length = 237

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 48/132 (36%), Gaps = 26/132 (19%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65
           F+  A+  +  +V      P  A L+V+DG ++GRG     T      HAEV A+  A +
Sbjct: 87  FLREAIEMAVQNVTTGQGGP-FAALVVRDGEIVGRGTNVVTTLNDPTAHAEVTAIRRACD 145

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                E  G T Y T EPC      P C        + RV       D           +
Sbjct: 146 ALDDFELAGCTLYATCEPC------PMCLGAAYWARLDRVYYAATQEDA----------A 189

Query: 121 QKGIIVDRMMES 132
           + G     + E 
Sbjct: 190 EAGFDDHHIYEE 201


>gi|120435954|ref|YP_861640.1| cytidine/deoxycytidylate deaminase family protein [Gramella
           forsetii KT0803]
 gi|117578104|emb|CAL66573.1| cytidine/deoxycytidylate deaminase family protein [Gramella
           forsetii KT0803]
          Length = 149

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 45/146 (30%), Gaps = 23/146 (15%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
           M +     + MS A+  +R    + +  P    +I K   +I               HAE
Sbjct: 1   MKIKDLQKKMMSRAIDLAREGRDMDNGGP-FGAVITKGDEIIAESCNKVLAKEDCTEHAE 59

Query: 57  VQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQ---------FIIEC----GIR 98
           ++A+++A  +      +G   + + EPC     +   A           +          
Sbjct: 60  LRAIQKACRKLNSSSLQGCVLFTSCEPCMMCLGAAYWADFDNIYYGASALDAKEYGFKYS 119

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGI 124
            +    D        + +Q    K +
Sbjct: 120 DMYYKTDADKRHQEFKMIQLCRDKAV 145


>gi|303232398|ref|ZP_07319090.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Atopobium vaginae PB189-T1-4]
 gi|302481482|gb|EFL44550.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Atopobium vaginae PB189-T1-4]
          Length = 164

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 56/158 (35%), Gaps = 24/158 (15%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTN-PSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           P +  D  FM A            + N   +  ++V +G +I R             HAE
Sbjct: 13  PATEADEAFMRA---ALAEARAAAAENEVPIGAVVVYNGAIIARAHNTREESTNPAGHAE 69

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
             A++ A E  +     G T YVTLEPC        CA  ++   I R V    DP    
Sbjct: 70  FLAMQHAAETLQRWRLFGCTVYVTLEPCLM------CAGLMLNARIDRCVYAASDPKAGA 123

Query: 112 SGRGLQ-----WLSQKGIIVDRMMESEGKIFLHAYLTR 144
            G          L+ K ++   +++ E    L  +   
Sbjct: 124 VGTLYNVSNDFRLNHKFMVTTGVLQGEAVELLQDFFRH 161


>gi|326203244|ref|ZP_08193109.1| CMP/dCMP deaminase zinc-binding [Clostridium papyrosolvens DSM
           2782]
 gi|325986502|gb|EGD47333.1| CMP/dCMP deaminase zinc-binding [Clostridium papyrosolvens DSM
           2782]
          Length = 145

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 55/155 (35%), Gaps = 43/155 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D  FM   +   +     T     V  +IVKD  ++  G                   
Sbjct: 4   SWDEYFMQI-VELIK--TRSTCIRRQVGAVIVKDKRILATGYNGAPVGCKHCSEVGCMRE 60

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G    GAT YVT +PC        CA+  I 
Sbjct: 61  KLNIPSGQRHELCRAIHAEQNAIVQAAYSGTSVSGATLYVTNQPC------VLCAKLAIN 114

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            GI R+V   + PD       +  LS+ GI V R+
Sbjct: 115 AGIVRIVFNGEYPD----ELAMTLLSEAGIEVVRL 145


>gi|257790791|ref|YP_003181397.1| CMP/dCMP deaminase zinc-binding [Eggerthella lenta DSM 2243]
 gi|317488497|ref|ZP_07947048.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Eggerthella sp. 1_3_56FAA]
 gi|325831992|ref|ZP_08165089.1| ComE operon protein 2 [Eggerthella sp. HGA1]
 gi|257474688|gb|ACV55008.1| CMP/dCMP deaminase zinc-binding [Eggerthella lenta DSM 2243]
 gi|316912429|gb|EFV33987.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Eggerthella sp. 1_3_56FAA]
 gi|325486313|gb|EGC88765.1| ComE operon protein 2 [Eggerthella sp. HGA1]
          Length = 152

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 51/150 (34%), Gaps = 43/150 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D  FM+ A   +      T    +V  +IVKD  ++  G                   
Sbjct: 9   SWDEYFMTLANEVATR---TTCMRRAVGAVIVKDRRILATGYNGVPTGMRHCAETGCLRQ 65

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G    GA+ YV  +PC        CA+ +I 
Sbjct: 66  QLGVPSGQRHEICRGLHAEQNAIIQAARYGINITGASIYVNTQPCIV------CAKMLIN 119

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            GI  +V     PD       +  L + G+
Sbjct: 120 AGIDEIVYQNPYPD----ELAMSMLEEAGM 145


>gi|299747155|ref|XP_002911134.1| tRNA specific adenosine deaminase [Coprinopsis cinerea
           okayama7#130]
 gi|298407392|gb|EFI27640.1| tRNA specific adenosine deaminase [Coprinopsis cinerea
           okayama7#130]
          Length = 188

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 49/133 (36%), Gaps = 29/133 (21%)

Query: 5   SFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHA 55
           + D R     +M  A+  +     L +    V C+ V+D  +I +             HA
Sbjct: 4   ALDERDRHLKWMKEAMNMAEEA--LAAGEVPVGCVFVRDEKIIAKARNRTNELRNATRHA 61

Query: 56  EVQALE----------EAGE--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           E++A++          + GE       T YVT+EPC        CA  + + GI+ V   
Sbjct: 62  ELEAIDCILSDNELTPQKGEPYPLSTTTLYVTVEPCIM------CASALRQLGIKEVFYG 115

Query: 104 VDDPDVRVSGRGL 116
             +      G  L
Sbjct: 116 CGNERFGGCGSVL 128


>gi|255008429|ref|ZP_05280555.1| putative nucleotide deaminase [Bacteroides fragilis 3_1_12]
          Length = 149

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 39/110 (35%), Gaps = 17/110 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEE 66
           M  A+  SR +V           +I KDG ++  GV           HAEV A+  A  +
Sbjct: 1   MRKAIELSRENVANGGG--PFGAVIAKDGEIVVTGVNRVTASCDPTAHAEVTAIRAAASK 58

Query: 67  -----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
                  G   Y + EPC      P C   I    + ++    +  D + 
Sbjct: 59  LGTFNLSGYEIYTSCEPC------PMCLGAIYWARLDKMYYGNNKTDAKN 102


>gi|222085014|ref|YP_002543543.1| cytosine deaminase protein [Agrobacterium radiobacter K84]
 gi|221722462|gb|ACM25618.1| cytosine deaminase protein [Agrobacterium radiobacter K84]
          Length = 152

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 53/149 (35%), Gaps = 22/149 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA- 63
            FM  AL  +R   G     P +  ++V D  VI +             HAE+ A+  A 
Sbjct: 6   HFMKLALAEARSA-GARGEVP-IGAVLVLDNAVIAKAGNRTRELNDVTAHAEIAAIRIAC 63

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                E   GA  YVTLEPC        CA  I    IRR+    +DP       G+++ 
Sbjct: 64  EALGQERLTGADLYVTLEPC------TMCAAAISFARIRRLYYGAEDPKGGGVDNGVRFY 117

Query: 120 S-----QKGIIVDRMMESEGKIFLHAYLT 143
                     +   + E +    L  +  
Sbjct: 118 RQPTCHHAPEVYSGIAERDAADILREFFQ 146


>gi|160891295|ref|ZP_02072298.1| hypothetical protein BACUNI_03744 [Bacteroides uniformis ATCC 8492]
 gi|156859516|gb|EDO52947.1| hypothetical protein BACUNI_03744 [Bacteroides uniformis ATCC 8492]
          Length = 138

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 51/141 (36%), Gaps = 17/141 (12%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA--- 63
           M  AL  +    G     P V  ++V    +I R      T      HAE+QA+  A   
Sbjct: 1   MKQALLEAHKA-GERGEVP-VGAVVVCKDRIIARAHNLTETLTDVTAHAEMQAITAAAAT 58

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
             G+     T YVT+EPC        CA  I    + R+V   +D          Q L  
Sbjct: 59  LGGKYLNECTLYVTVEPC------VMCAGAIAWAQMGRLVFGAEDEKRGYQRYASQALHP 112

Query: 122 KGIIVDRMMESEGKIFLHAYL 142
           K  +V  ++  E    +  + 
Sbjct: 113 KTQVVKGILADECAALMKEFF 133


>gi|207108305|ref|ZP_03242467.1| riboflavin biosynthesis protein [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 156

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 59/169 (34%), Gaps = 39/169 (23%)

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKL 230
            ITG  S    H  RA  D +++   T+  D+P L  R      Q  +P   IL     +
Sbjct: 15  KITGPKSVIFTHNQRAICDTLIISGKTIRTDNPLLDTRFCDSFYQGKNPNIAILSKR-SI 73

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
           +  SK+  T                         +   + D +DL       + +G    
Sbjct: 74  NPSSKVFSTPNR----------------------LVNTFHDPKDLP------LEKGFN-- 103

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLE 335
            +EGG  +  S  +   +D ++L+    +I E      + +P +   + 
Sbjct: 104 FIEGGWGLFESLRDK--IDVLLLHSHASMISEAFNTLALKTPFKGSVVA 150


>gi|85709873|ref|ZP_01040938.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Erythrobacter sp. NAP1]
 gi|85688583|gb|EAQ28587.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Erythrobacter sp. NAP1]
          Length = 149

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 55/151 (36%), Gaps = 22/151 (14%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
           F A FMS+AL  +R    L      +  ++VKDG +I  G            HAE+ A+ 
Sbjct: 3   FPASFMSSALSLARAASEL--GEVPIGAVVVKDGKIIAEGHNETRDQNDPTAHAEIVAIR 60

Query: 62  EAG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A      +   G   +VTLEPC+       CA  I    I R+     DP       G 
Sbjct: 61  RAAAALGDDRLTGCDLWVTLEPCAM------CAGAIAHARIARLYYAASDPKGGAVEHGA 114

Query: 117 QWLS-----QKGIIVDRMMESEGKIFLHAYL 142
           +         +  +   + E E    L  + 
Sbjct: 115 RVFEQEQCLHRPEVYSGLGEEEAADMLRGFF 145


>gi|260587372|ref|ZP_05853285.1| putative deoxycytidylate deaminase [Blautia hansenii DSM 20583]
 gi|331083672|ref|ZP_08332783.1| hypothetical protein HMPREF0992_01707 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542239|gb|EEX22808.1| putative deoxycytidylate deaminase [Blautia hansenii DSM 20583]
 gi|330403883|gb|EGG83435.1| hypothetical protein HMPREF0992_01707 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 161

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 54/149 (36%), Gaps = 34/149 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV-------------TAYG 50
           S+D  FM  A + S   +     N  V   IV +D  ++  G               A  
Sbjct: 10  SWDEYFMGVA-KLS--GMRSKDPNSQVGACIVSQDNKILSMGYNGFPMGCSDDEFPWARE 66

Query: 51  GCP---------HAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           G           H+E+ A+    G    GA  YV+L PC+       CA+ II+ GI+ +
Sbjct: 67  GEELDTKYFYVTHSELNAILNYRGGSLEGAKLYVSLFPCNE------CAKAIIQAGIKTI 120

Query: 101 VVCVDDP-DVRVSGRGLQWLSQKGIIVDR 128
           V   D   D        + L   G+   +
Sbjct: 121 VYECDKYADSAAVKASKRMLDAAGVRYYQ 149


>gi|167836996|ref|ZP_02463879.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           thailandensis MSMB43]
          Length = 194

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 55/168 (32%), Gaps = 22/168 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60
             D R+M   +  +       +    V  +IV+   VI RG     G      HAE+ AL
Sbjct: 27  ERDRRYMR--IALAAAEEARAAGEVPVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAAL 84

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A          G   YVTLEPC        C+  I+   I RVV    DP     G  
Sbjct: 85  RAAARALRNYRMPGCELYVTLEPCLM------CSGAIMHARIARVVFGAPDPKTGACGSV 138

Query: 116 LQ-----WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAV 158
           +       L+    +   ++  E    L ++   + +           
Sbjct: 139 VDAFADARLNHHTTVEGGVLADECGAALKSFFAERRQAMREARRAQQT 186


>gi|67608724|ref|XP_666899.1| dCMP deaminase; Dcd1p [Cryptosporidium hominis TU502]
 gi|54657972|gb|EAL36670.1| dCMP deaminase; Dcd1p [Cryptosporidium hominis]
          Length = 373

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 59/160 (36%), Gaps = 39/160 (24%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
           ++D  FM  A + +       S    V  +IVK+  +I  G                   
Sbjct: 223 NWDEYFMKIA-KLASQRSNCVSR--KVGSVIVKEKKIISTGYNGTPKNMKNCFEGGCTRC 279

Query: 48  -----------AYGGCPHAEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                          C HAE  AL  AG ++  GAT YVTL PC        C + II+C
Sbjct: 280 ANPNRVEGKSLETCSCMHAETNALLFAGIDKCIGATIYVTLMPCI------SCTKNIIQC 333

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135
            I RVV   +          ++ L    + VDR++E +  
Sbjct: 334 EIERVVFTTEYAIPDE-ISTIKLLRDSNVKVDRLVEKQSC 372


>gi|218129188|ref|ZP_03457992.1| hypothetical protein BACEGG_00763 [Bacteroides eggerthii DSM 20697]
 gi|217988566|gb|EEC54886.1| hypothetical protein BACEGG_00763 [Bacteroides eggerthii DSM 20697]
          Length = 138

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 51/141 (36%), Gaps = 17/141 (12%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA--- 63
           M  AL  ++   G     P V  ++V    VI R      T      HAE+QA+  A   
Sbjct: 1   MKQALLEAQKA-GDRGEVP-VGAVVVCKDRVIARAHNLTETLTDVTAHAEMQAITAAAST 58

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
             G+     T YVT+EPC        CA  I      R+V   +D            L  
Sbjct: 59  LGGKYLNECTLYVTVEPC------VMCAGAIAWAQTGRLVFGAEDEKRGYQRYAPHALHP 112

Query: 122 KGIIVDRMMESEGKIFLHAYL 142
           K ++V  ++  E    +  + 
Sbjct: 113 KTVVVKGVLGDECAALMKNFF 133


>gi|229819017|ref|YP_002880543.1| CMP/dCMP deaminase zinc-binding [Beutenbergia cavernae DSM 12333]
 gi|229564930|gb|ACQ78781.1| CMP/dCMP deaminase zinc-binding [Beutenbergia cavernae DSM 12333]
          Length = 158

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 54/146 (36%), Gaps = 23/146 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----CPHAEVQALEE 62
              +  AL  +R     T   P V  +++  DG VIGRG            HAE+ A+ E
Sbjct: 4   EEAIGLALELAR-GALETDDVP-VGAVVLGPDGEVIGRGANRREADDDPTAHAEMIAIRE 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A          G T  VTLEPC        CA   +   + R+V    DP    +G    
Sbjct: 62  AAAALGQWRLEGCTLAVTLEPC------TMCAGATVLARLPRLVFGAYDPKAGAAGSVTD 115

Query: 118 -----WLSQKGIIVDRMMESEGKIFL 138
                 L+ +  +   + E+E    L
Sbjct: 116 VVRDPRLNHRVEVTGGVREAECGEEL 141


>gi|269121089|ref|YP_003309266.1| CMP/dCMP deaminase zinc-binding protein [Sebaldella termitidis ATCC
           33386]
 gi|268614967|gb|ACZ09335.1| CMP/dCMP deaminase zinc-binding protein [Sebaldella termitidis ATCC
           33386]
          Length = 164

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 33/147 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVA-CLIVKDGIVIGRGV----------------- 46
           S++  FM  AL   +     T+    V  C+I +D  ++G G                  
Sbjct: 9   SWNEYFMGLALLSGKRSKDPTT---QVGACIIDEDKKIVGIGYNGFPLGSSDDNMPWGKQ 65

Query: 47  -----TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                T Y    HAE+ A+  + +  +G T YVT  PC+       CA+ I++  I RV+
Sbjct: 66  GDFLETKYPYVVHAELNAILNSIKSLKGCTVYVTHFPCNE------CAKAIVQSKISRVI 119

Query: 102 VCVD-DPDVRVSGRGLQWLSQKGIIVD 127
              D   D        + L   GI ++
Sbjct: 120 YLSDKHKDKDSFKASKRILENAGIKIE 146


>gi|288803845|ref|ZP_06409271.1| guanine deaminase [Prevotella melaninogenica D18]
 gi|288333679|gb|EFC72128.1| guanine deaminase [Prevotella melaninogenica D18]
          Length = 155

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 37/115 (32%), Gaps = 25/115 (21%)

Query: 8   ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
              M  A+  S    R   G          +I ++G +I  G            HAEV  
Sbjct: 4   EELMRRAIELSADSVRNGGG------PFGAVIARNGEIIAEGSNGVTIYNDPTAHAEVST 57

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           + +A +     +  G   Y + EPC      P C   I    + ++    D  D 
Sbjct: 58  IRKACQKLNTFDLSGCEIYTSCEPC------PMCFGAIYWAHLDKIYYANDRKDA 106


>gi|302346851|ref|YP_003815149.1| guanine deaminase [Prevotella melaninogenica ATCC 25845]
 gi|302150909|gb|ADK97170.1| guanine deaminase [Prevotella melaninogenica ATCC 25845]
          Length = 155

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 37/115 (32%), Gaps = 25/115 (21%)

Query: 8   ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
              M  A+  S    R   G          +I ++G +I  G            HAEV  
Sbjct: 4   EELMRRAIELSADSVRNGGG------PFGAVIARNGEIIAEGSNGVTIYNDPTAHAEVST 57

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           + +A +     +  G   Y + EPC      P C   I    + ++    D  D 
Sbjct: 58  IRKACQKLNTFDLSGCEIYTSCEPC------PMCFGAIYWAHLDKIYYANDRKDA 106


>gi|254519765|ref|ZP_05131821.1| deoxycytidylate deaminase [Clostridium sp. 7_2_43FAA]
 gi|226913514|gb|EEH98715.1| deoxycytidylate deaminase [Clostridium sp. 7_2_43FAA]
          Length = 164

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 53/147 (36%), Gaps = 34/147 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
           S+D  FM  A+  +         +  V   IV  D  ++ +G                  
Sbjct: 8   SWDEYFMGVAI-LA--GKRSKDPSTQVGACIVDNDNKILSQGYNGLPRGCSDDEFPWDRE 64

Query: 47  -----TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                T Y    HAE+ A L   G    GA  YV L PC+       CA+ II+ GI+ V
Sbjct: 65  GHVLETKYPYVVHAELNAILNSRGTNLYGAKIYVALFPCNE------CAKAIIQAGIKEV 118

Query: 101 VVCVDDP-DVRVSGRGLQWLSQKGIIV 126
           V   D   D        + LS  G+ +
Sbjct: 119 VYLSDKYSDSDNVKASKRLLSASGVKM 145


>gi|289550640|ref|YP_003471544.1| dCMP deaminase ; Late competence protein ComEB [Staphylococcus
           lugdunensis HKU09-01]
 gi|315658135|ref|ZP_07911007.1| ComE operon protein comEB [Staphylococcus lugdunensis M23590]
 gi|289180172|gb|ADC87417.1| dCMP deaminase ; Late competence protein ComEB [Staphylococcus
           lugdunensis HKU09-01]
 gi|315496464|gb|EFU84787.1| ComE operon protein comEB [Staphylococcus lugdunensis M23590]
          Length = 153

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 51/148 (34%), Gaps = 34/148 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M    ++  FM+ +   +           SV   IVKD  +I  G               
Sbjct: 1   MERIKWEEYFMAQSHLLALRSTCQRL---SVGATIVKDNRIIAGGYNGSVAGEVHCIDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G    GAT YVT  PC +      C + II+ GI 
Sbjct: 58  CLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLN------CTKSIIQAGIT 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            +    D  +   +   ++ L Q GI  
Sbjct: 112 TIYYAQDYHNHEYA---IRLLDQSGITY 136


>gi|258405729|ref|YP_003198471.1| CMP/dCMP deaminase zinc-binding [Desulfohalobium retbaense DSM
           5692]
 gi|257797956|gb|ACV68893.1| CMP/dCMP deaminase zinc-binding protein [Desulfohalobium retbaense
           DSM 5692]
          Length = 165

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 54/160 (33%), Gaps = 31/160 (19%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRG----VTAYGGCPHAEVQALEEAGE 65
           M  AL  +R     T     +  ++V  D  V+ RG    +T      HAE+ AL  A +
Sbjct: 19  MELALDEARAAQ--THGEVPIGAVLVDPDKRVLARGGNRTITDSDPTAHAEIVALRRACQ 76

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                   GA   VTLEPC        C   +I+  +  VV    DP             
Sbjct: 77  SVGNYRLPGAILAVTLEPCLM------CLGALIQARLAGVVFAARDPK------------ 118

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
             G IV ++         H +  R+    +  +  +    
Sbjct: 119 -AGAIVSQLEGPHLPWLNHRFWVRETTAHAATSRALLQDF 157


>gi|298714567|emb|CBJ27558.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 504

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 56/160 (35%), Gaps = 30/160 (18%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV------KDG--IVIGRGVTAYGGC---- 52
             D RFM  ALR +            +  ++       +DG   V+  G     G     
Sbjct: 333 EDDDRFMRMALRLA--GRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDAS 390

Query: 53  PHAEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
            HAE+  L+ A          G T YVT+EPC+       C        + RVV    +P
Sbjct: 391 AHAEMLCLQAAAKARSNWRLAGTTLYVTVEPCAM------CLSAAQLFRVDRVVFGAPNP 444

Query: 108 DVRVSGRGLQWLSQKG-----IIVDRMMESEGKIFLHAYL 142
           ++   G  +   SQ+       +   ++  E  + L  + 
Sbjct: 445 NLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFF 484


>gi|218245509|ref|YP_002370880.1| bifunctional deaminase-reductase domain-containing protein
           [Cyanothece sp. PCC 8801]
 gi|218165987|gb|ACK64724.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC
           8801]
          Length = 176

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/208 (22%), Positives = 77/208 (37%), Gaps = 45/208 (21%)

Query: 156 IAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
           IA S D  I  +  G   +        S           DAI++G  T       LT   
Sbjct: 7   IATSLDGFIATSNGGLEWLEELPNPEQSDYGYAEFMKSIDAIMMGRNTFEK---VLT--F 61

Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD 271
                + P+ I+ +   KL  D  I+  A +                             
Sbjct: 62  AQWVYNKPVFILSNSLTKLPDD--ILDKAEIIK--------------------------- 92

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D+KKL++ L  +G  +L ++GG  V  SF+   L+D II+ R  I++G+G   S   E
Sbjct: 93  -GDIKKLISQLNQKGYKNLYIDGG-QVIQSFLQEDLIDEIIITRVPIILGKG--VSLFGE 148

Query: 332 GYLEKNFMCVRRDYFGSDVCLE--YIGK 357
                 F   +   + +++ ++  YI +
Sbjct: 149 REKPLKFRHQKTQIY-NNILVKSHYIRE 175


>gi|256003264|ref|ZP_05428256.1| CMP/dCMP deaminase zinc-binding [Clostridium thermocellum DSM 2360]
 gi|255992955|gb|EEU03045.1| CMP/dCMP deaminase zinc-binding [Clostridium thermocellum DSM 2360]
          Length = 174

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 52/150 (34%), Gaps = 43/150 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D  FM   +   +     T     V  LIVKD  ++  G                   
Sbjct: 25  SWDEYFMEI-VELIK--TRSTCLRRQVGALIVKDKRILATGYNGAPMGCKHCSEIGCLRE 81

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G    G T YVT +PC        CA+  I 
Sbjct: 82  KLNVPSGQRHELCRAIHAEQNAIVQAAYSGTSVNGGTLYVTTQPCI------LCAKMAIN 135

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            GI+++V   D PD       ++ L + GI
Sbjct: 136 AGIKKIVFKGDYPD----ELSMEMLKEAGI 161


>gi|262276493|ref|ZP_06054302.1| tRNA-specific adenosine-34 deaminase [Grimontia hollisae CIP
           101886]
 gi|262220301|gb|EEY71617.1| tRNA-specific adenosine-34 deaminase [Grimontia hollisae CIP
           101886]
          Length = 174

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 67/193 (34%), Gaps = 44/193 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD---------------GIVIGRG 45
           M  S  D +FM  A+  +                 V                   +IG  
Sbjct: 1   MTQSELDQQFMRRAMALAAKAEAEGE---------VPVGAVVVHNGVVVGEGWNRLIG-- 49

Query: 46  VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
              +    HAE+ AL +AG++ +      A  YVTLEPC      P CA  ++   I +V
Sbjct: 50  --QHDATAHAEMMALRQAGKKLQNYRLLEAVLYVTLEPC------PMCASAMVHSRIGKV 101

Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVD-----RMMESEGKIFLHAYLTRQVEKRSHITLK 155
           V    D     +G  +  LS  G+         ++E E +  L A+  R+ +++      
Sbjct: 102 VFGAPDYKTGAAGSVMNLLSYDGVNHHVQFQGGVLEEECREQLQAFFRRRRQEKKAEKEA 161

Query: 156 IAVSQDNMIGMAG 168
               QD     + 
Sbjct: 162 RKAVQDPSRNTSS 174


>gi|167619629|ref|ZP_02388260.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           thailandensis Bt4]
          Length = 194

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 54/153 (35%), Gaps = 22/153 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQA 59
           +  D R+M   +  +       +    V  +IV+   VI RG     G      HAE+ A
Sbjct: 26  AERDRRYMR--IALAAAEEARAAGEVPVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAA 83

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           L  A          G   YVTLEPC        C+  I+   I RVV    DP     G 
Sbjct: 84  LRAAARALRNYRMPGCELYVTLEPCLM------CSGAIMHARIARVVFGAPDPKTGACGS 137

Query: 115 GLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
            +       L+    +   ++  E    L ++ 
Sbjct: 138 VVDAFADARLNHHTTVEGGVLADECGAALKSFF 170


>gi|167581517|ref|ZP_02374391.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           thailandensis TXDOH]
          Length = 194

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 54/153 (35%), Gaps = 22/153 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQA 59
           +  D R+M   +  +       +    V  +IV+   VI RG     G      HAE+ A
Sbjct: 26  AERDRRYMR--IALAAAEEARAAGEVPVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAA 83

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           L  A          G   YVTLEPC        C+  I+   I RVV    DP     G 
Sbjct: 84  LRAAARALRNYRMPGCELYVTLEPCLM------CSGAIMHARIARVVFGAPDPKTGACGS 137

Query: 115 GLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
            +       L+    +   ++  E    L ++ 
Sbjct: 138 VVDAFADVRLNHHTTVEGGVLADECGAALKSFF 170


>gi|294507332|ref|YP_003571390.1| cytidine deaminase [Salinibacter ruber M8]
 gi|294343661|emb|CBH24439.1| Probable cytidine deaminase [Salinibacter ruber M8]
          Length = 237

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 48/132 (36%), Gaps = 26/132 (19%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65
           F+  A+  +  +V      P  A L+V+DG ++GRG     T      HAEV A+  A +
Sbjct: 87  FLREAIEMAVQNVTTGQGGP-FAALVVRDGEIVGRGTNVVTTLNDPTAHAEVTAIRRACD 145

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                E  G T Y T EPC      P C        + RV       D           +
Sbjct: 146 ALDDFELAGCTLYATCEPC------PMCLGAAYWARLDRVYYAATQEDA----------A 189

Query: 121 QKGIIVDRMMES 132
           + G     + E 
Sbjct: 190 EAGFDDHHIYEE 201


>gi|256832618|ref|YP_003161345.1| bifunctional deaminase-reductase domain-containing protein [Jonesia
           denitrificans DSM 20603]
 gi|256686149|gb|ACV09042.1| bifunctional deaminase-reductase domain protein [Jonesia
           denitrificans DSM 20603]
          Length = 261

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 72/185 (38%), Gaps = 13/185 (7%)

Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
           +     +    +   +  S D  I      S  +           LR   D ++V  GTV
Sbjct: 29  HRYVWPQDSVWVRANMVSSIDGAIAGVDGLSGSLNNEADGEVFAALRGLCDVVVVAGGTV 88

Query: 201 LADD------PE----LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
             +       P     +  RL GL EH  + +++    +L  ++ +     + P++  T 
Sbjct: 89  RTEGYEGIEVPAQWCGVRSRL-GLPEHIQL-VVVSGSGRLP-EAVLSPGVGVPPLVATTV 145

Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
                LA    ++ + +   +  D+  ++  LV RG+  +L+EGG ++     ++ +VD 
Sbjct: 146 VGARRLAGRIDERQLMVCAGERVDVSWVVDQLVVRGMGRVLMEGGPSLLAQAFSAGVVDE 205

Query: 311 IILYR 315
           + L  
Sbjct: 206 LALTT 210


>gi|302521124|ref|ZP_07273466.1| cytidine/deoxycytidine deaminase [Streptomyces sp. SPB78]
 gi|302430019|gb|EFL01835.1| cytidine/deoxycytidine deaminase [Streptomyces sp. SPB78]
          Length = 151

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 60/156 (38%), Gaps = 19/156 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHA 55
           M  +     ++  A+  +R   GL      +   +   DG ++GRG            H 
Sbjct: 1   MLTTEQAQEWLRPAIEEAR--QGLAEGGVPIGAALYGADGTLLGRGHNRRVQDADPSSHG 58

Query: 56  EVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           E  A  +AG +   RG T   TL PC +      C+  I + GI RVV+           
Sbjct: 59  ETDAFRKAGRQRTYRGTTMVTTLSPCWY------CSGLIKQFGITRVVIGESTTFKGGE- 111

Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
               WL ++G+ + R+ + E    +  ++ +  +  
Sbjct: 112 ---DWLEEQGVEIIRLTDPECVDLMTEFVEKYPDVW 144


>gi|83719984|ref|YP_442586.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           thailandensis E264]
 gi|83653809|gb|ABC37872.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           thailandensis E264]
          Length = 194

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 54/153 (35%), Gaps = 22/153 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQA 59
           +  D R+M   +  +       +    V  +IV+   VI RG     G      HAE+ A
Sbjct: 26  AERDRRYMR--IALAAAEEARAAGEVPVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAA 83

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           L  A          G   YVTLEPC        C+  I+   I RVV    DP     G 
Sbjct: 84  LRAAARALRNYRMPGCELYVTLEPCLM------CSGAIMHARIARVVFGAPDPKTGACGS 137

Query: 115 GLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
            +       L+    +   ++  E    L ++ 
Sbjct: 138 VVDAFADARLNHHTTVEGGVLADECGAALKSFF 170


>gi|134024903|gb|AAI35110.1| Unknown (protein for IMAGE:7163502) [Danio rerio]
          Length = 241

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 51/163 (31%), Gaps = 30/163 (18%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL----- 60
           +M+ A   +     L +    V CL+V +  +IG+G            HAE+ AL     
Sbjct: 51  WMAKAFDMA--VEALENGEVPVGCLMVYNNEIIGKGRNEVNETKNATRHAEMVALDQVLD 108

Query: 61  ------EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
                 ++  E       YVT+EPC        CA  +    I  VV    +      G 
Sbjct: 109 WCRLREKDCKEVCEQTVLYVTVEPCIM------CAAALRLLRIPFVVYGCKNERFGGCGS 162

Query: 115 GL----QWLSQKGIIVDRM---MESEGKIFLHAYLTRQVEKRS 150
            L      L   G     +      E    L  +  ++     
Sbjct: 163 VLDVSSDHLPHTGTSFKCIAGYRAEEAVEMLKTFYKQENPNAP 205


>gi|15616866|ref|NP_240079.1| hypothetical protein BU255 [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219682178|ref|YP_002468562.1| tRNA-specific adenosine deaminase monomer (YfhC) [Buchnera
           aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|14286004|sp|P57343|Y255_BUCAI RecName: Full=Uncharacterized protein BU255
 gi|25303863|pir||E84959 hypothetical protein yfhC [imported] - Buchnera sp. (strain APS)
 gi|10038930|dbj|BAB12965.1| hypothetical protein yfhC [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219621911|gb|ACL30067.1| tRNA-specific adenosine deaminase monomer (YfhC) [Buchnera
           aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|311086568|gb|ADP66649.1| tRNA-specific adenosine deaminase monomer (YfhC) [Buchnera
           aphidicola str. TLW03 (Acyrthosiphon pisum)]
 gi|311087149|gb|ADP67229.1| tRNA-specific adenosine deaminase monomer (YfhC) [Buchnera
           aphidicola str. JF99 (Acyrthosiphon pisum)]
 gi|311087683|gb|ADP67762.1| tRNA-specific adenosine deaminase monomer (YfhC) [Buchnera
           aphidicola str. JF98 (Acyrthosiphon pisum)]
          Length = 161

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 17/126 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
             D  +M  AL+++ +          +  ++V    +IG G            HAE+ AL
Sbjct: 4   EKDKNWMKIALKYAYYAK--EKGEIPIGAILVFKERIIGIGWNSSISKNDPTAHAEIIAL 61

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             AG++ +       T YVTL+PC        C   II+  I+R+V   +          
Sbjct: 62  RGAGKKIKNYRLLNTTLYVTLQPCIM------CCGAIIQSRIKRLVFGANCNSSDHRFSL 115

Query: 116 LQWLSQ 121
                 
Sbjct: 116 KNLFCD 121


>gi|313472533|ref|ZP_07813023.1| cytidine/deoxycytidylate deaminase family protein [Lactobacillus
           jensenii 1153]
 gi|313448996|gb|EEQ68969.2| cytidine/deoxycytidylate deaminase family protein [Lactobacillus
           jensenii 1153]
          Length = 160

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 16/101 (15%)

Query: 30  SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR-----GATAYVTLEPC 79
            +  ++V  DG VIGRG            HAE+ A+ EA +          + +VTLEPC
Sbjct: 28  PIGAIVVAPDGQVIGRGYNRRELDNIATHHAEILAINEACKNLNSWRLIDCSLFVTLEPC 87

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           +       CA  II   ++ V     D     SG  +   +
Sbjct: 88  AM------CAGAIINARLKEVFYGAPDHKAGASGSVVDLFA 122


>gi|224025654|ref|ZP_03644020.1| hypothetical protein BACCOPRO_02394 [Bacteroides coprophilus DSM
           18228]
 gi|224018890|gb|EEF76888.1| hypothetical protein BACCOPRO_02394 [Bacteroides coprophilus DSM
           18228]
          Length = 155

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 19/116 (16%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           ++  D   M  A+  S  +V           +I ++G ++  GV           HAEV 
Sbjct: 1   MTKEDL--MRKAIELSIRNVAEGGG--PFGAVIARNGEIVATGVNRVTPDCDPTAHAEVS 56

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           A+  A +     +  G   Y + EPC      P C   I    +  +    +  D 
Sbjct: 57  AIRAAAKVLGTFDLSGCEIYTSCEPC------PMCLGAIYWAHLDCMYYGNNKHDA 106


>gi|116202471|ref|XP_001227047.1| hypothetical protein CHGG_09120 [Chaetomium globosum CBS 148.51]
 gi|88177638|gb|EAQ85106.1| hypothetical protein CHGG_09120 [Chaetomium globosum CBS 148.51]
          Length = 167

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 53/145 (36%), Gaps = 20/145 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVT-AYGGCPHAEVQALEEAG 64
             +M  AL  ++       TN  V  ++V      ++  G T    G  HAE     +  
Sbjct: 10  KAYMRLALEQAQKSPPK-PTNYRVGAVLVDSATNEILVTGYTLELSGNTHAEQTCFVKLA 68

Query: 65  EE------------ARGATAYVTLEPCS-HYGRSPPCAQFIIEC--GIRRVVVCVDDPDV 109
           E+                  Y T+EPCS     + PC + ++     IR V V + +P+ 
Sbjct: 69  EKHGVSEEDLKSVLPGDLALYTTVEPCSKRLSGNLPCVERVLRLAGSIRTVYVGIMEPET 128

Query: 110 RVSGRGLQW-LSQKGIIVDRMMESE 133
            V+    +  L   GI V  +   E
Sbjct: 129 FVAENTGKKSLEDAGIAVVHVEGFE 153


>gi|260592105|ref|ZP_05857563.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
           veroralis F0319]
 gi|260535983|gb|EEX18600.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
           veroralis F0319]
          Length = 144

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 54/146 (36%), Gaps = 32/146 (21%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----------- 50
             S  D R++  A  ++            V  L+VKD ++I  G                
Sbjct: 4   KQSLLDYRYLRMARIWAENSYCRRR---QVGALVVKDKMIISDGYNGTPSGFENICEDES 60

Query: 51  GCP-----HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           G       HAE  A   L  +   + GAT YVT  PC        C++ II+ GIRRVV 
Sbjct: 61  GTTFPYVLHAEANAITKLARSSNNSDGATLYVTASPCIE------CSKLIIQAGIRRVVY 114

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDR 128
                       G+  L + G+ V+ 
Sbjct: 115 AEKYRLT----DGVDLLEKAGVKVEY 136


>gi|217979127|ref|YP_002363274.1| CMP/dCMP deaminase zinc-binding [Methylocella silvestris BL2]
 gi|217504503|gb|ACK51912.1| CMP/dCMP deaminase zinc-binding [Methylocella silvestris BL2]
          Length = 145

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 46/126 (36%), Gaps = 21/126 (16%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M   + D RFM AAL+ +               LI +DG  I  G     T      HAE
Sbjct: 1   MISRATDERFMRAALKEAALGDF------PFGALIAQDGETIATGRNLGETNDDPTAHAE 54

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL            R +T Y T EPC      P C   II CG+ R+V       +  
Sbjct: 55  MVALRGVIAAYGAARLRDSTLYATGEPC------PMCMGAIIWCGVGRLVYAASIEQLAQ 108

Query: 112 SGRGLQ 117
               ++
Sbjct: 109 RIGQIE 114


>gi|109706863|gb|ABG43006.1| cytosine deaminase [Candida glabrata]
          Length = 155

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 56/149 (37%), Gaps = 19/149 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG--GCP--HAE 56
             + +DA  M  A   +          P   CLI  KDG V+GRG       G P  H E
Sbjct: 3   NAAQWDALGMKIAYEEAAKG-FEEGGVPIGGCLINNKDGTVLGRGHNMRFQKGSPTLHGE 61

Query: 57  VQALEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           +  LE  G       +  T Y TL PC        C   I+  GI R V+   D      
Sbjct: 62  ISTLENCGRLEGKVYKDTTLYTTLSPCDM------CTGAILLYGIPRCVIGESDNFKSPG 115

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
               ++L  +G+ V +M +   K  +  +
Sbjct: 116 E---EYLKSRGVEVVQMNDEPCKAIMKKF 141


>gi|126701100|ref|YP_001089997.1| putative cytidine and deoxycytidylate deaminase [Clostridium
           difficile 630]
 gi|254977101|ref|ZP_05273573.1| putative cytidine and deoxycytidylate deaminase [Clostridium
           difficile QCD-66c26]
 gi|255094429|ref|ZP_05323907.1| putative cytidine and deoxycytidylate deaminase [Clostridium
           difficile CIP 107932]
 gi|255102686|ref|ZP_05331663.1| putative cytidine and deoxycytidylate deaminase [Clostridium
           difficile QCD-63q42]
 gi|255308507|ref|ZP_05352678.1| putative cytidine and deoxycytidylate deaminase [Clostridium
           difficile ATCC 43255]
 gi|255316181|ref|ZP_05357764.1| putative cytidine and deoxycytidylate deaminase [Clostridium
           difficile QCD-76w55]
 gi|255518842|ref|ZP_05386518.1| putative cytidine and deoxycytidylate deaminase [Clostridium
           difficile QCD-97b34]
 gi|255652021|ref|ZP_05398923.1| putative cytidine and deoxycytidylate deaminase [Clostridium
           difficile QCD-37x79]
 gi|255657431|ref|ZP_05402840.1| putative cytidine and deoxycytidylate deaminase [Clostridium
           difficile QCD-23m63]
 gi|260684996|ref|YP_003216281.1| putative cytidine and deoxycytidylate deaminase [Clostridium
           difficile CD196]
 gi|260688654|ref|YP_003219788.1| putative cytidine and deoxycytidylate deaminase [Clostridium
           difficile R20291]
 gi|296449027|ref|ZP_06890817.1| cytidine/deoxycytidylate deaminase [Clostridium difficile NAP08]
 gi|296879850|ref|ZP_06903823.1| cytidine/deoxycytidylate deaminase [Clostridium difficile NAP07]
 gi|306521763|ref|ZP_07408110.1| putative cytidine and deoxycytidylate deaminase [Clostridium
           difficile QCD-32g58]
 gi|115252537|emb|CAJ70380.1| putative dCMP deaminase [Clostridium difficile]
 gi|260211159|emb|CBA66608.1| putative cytidine and deoxycytidylate deaminase [Clostridium
           difficile CD196]
 gi|260214671|emb|CBE07302.1| putative cytidine and deoxycytidylate deaminase [Clostridium
           difficile R20291]
 gi|296262120|gb|EFH08925.1| cytidine/deoxycytidylate deaminase [Clostridium difficile NAP08]
 gi|296429139|gb|EFH15013.1| cytidine/deoxycytidylate deaminase [Clostridium difficile NAP07]
          Length = 145

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 51/151 (33%), Gaps = 43/151 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D  FM  A    +     T     V  +IV+D  ++  G                   
Sbjct: 4   SWDEYFMEIA-EVVKKR--STCIRRQVGAVIVRDKQILTTGYNGSPRNLEHCENIGCKRQ 60

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G    GAT YVT  PC        CA+  I 
Sbjct: 61  ELNIPSGERHELCRALHAEQNAIIQAAHNGISVDGATLYVTTRPC------VLCAKMCIN 114

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            GI ++V   D PD   +    + L + GI 
Sbjct: 115 AGILKIVYEGDYPDDMST----ELLKEAGIE 141


>gi|289450291|ref|YP_003474389.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184838|gb|ADC91263.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 165

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 57/160 (35%), Gaps = 34/160 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
           S+D  FM  AL  ++        N  V   IV  +  +I  G                  
Sbjct: 9   SWDEYFMGVALLSAQRSK---DPNTQVGACIVSPNNRIISVGYNGLPYGCSDETFPWERE 65

Query: 47  -----TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                T Y    HAE+ A L   G    GA  YV L PC+       C++ II+ G+  V
Sbjct: 66  GDYLSTKYPYVCHAELNAILNNPGAILHGARIYVDLFPCNE------CSKAIIQAGLVEV 119

Query: 101 VVCVDDPDVRVSGR-GLQWLSQKGIIVDRMMESEGKIFLH 139
           +   D      + +   + +   G+   R++    KI L 
Sbjct: 120 IYLSDKYASTDAVKASKRMMDAAGVKYRRLIPDHTKITLE 159


>gi|50288375|ref|XP_446616.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525924|emb|CAG59543.1| unnamed protein product [Candida glabrata]
          Length = 307

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 55/148 (37%), Gaps = 41/148 (27%)

Query: 5   SFDARFMSAA-LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP- 53
            +D  FM  A L  SR +         V C+IV++  VI  G            +GGCP 
Sbjct: 157 DWDTYFMKLATLAASRSNCMKR----RVGCVIVRECRVIATGYNGTPRHLTNCFHGGCPR 212

Query: 54  ---------------HAEVQALEEAGEEARG--ATAYVTLEPCSHYGRSPPCAQFIIECG 96
                          HAE  AL EAG +  G  AT Y    PC        C+  I++ G
Sbjct: 213 CNDGDSKNLHTCLCLHAEENALLEAGRDRVGQNATLYCDTCPCL------TCSVKIVQTG 266

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           I  VV        R+     + L + GI
Sbjct: 267 ITEVVYSQTY---RMDDASFKVLREAGI 291


>gi|222111201|ref|YP_002553465.1| cmp/dcmp deaminase zinc-binding [Acidovorax ebreus TPSY]
 gi|221730645|gb|ACM33465.1| CMP/dCMP deaminase zinc-binding [Acidovorax ebreus TPSY]
          Length = 155

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 41/116 (35%), Gaps = 21/116 (18%)

Query: 5   SFDARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQ 58
           S D   +  A+  +      G          +I + G VI  G    V ++    HAE+Q
Sbjct: 2   STDTALLRRAVHLAHDNRARGGR----PFGAVIARGGEVIATGVNDIVHSHDPSTHAEMQ 57

Query: 59  ALEE-----AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AL       A     G T Y +  PC      P C   ++  G  RV    D+ D 
Sbjct: 58  ALRAATRQRANPSLAGCTVYASGHPC------PMCLAALVMAGADRVFYAFDNRDA 107


>gi|328883836|emb|CCA57075.1| tRNA-specific adenosine-34 deaminase [Streptomyces venezuelae ATCC
           10712]
          Length = 190

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 23/147 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGC----PHAEVQALEEAGE 65
           M  AL  +   +   + +  V  +++  DG V+ R             HAEV AL  A  
Sbjct: 49  MRIALAEADAALP--AGDVPVGAVVLGPDGAVLARAHNEREATGDPTAHAEVLALRRAAV 106

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-- 118
                   G T  VTLEPC        CA  +++  + RVV    D     +G       
Sbjct: 107 ATGEWRLTGCTLVVTLEPC------VMCAGALVQSRVERVVFGAPDEKAGAAGSLWDLVR 160

Query: 119 ---LSQKGIIVDRMMESEGKIFLHAYL 142
              L+ +  ++  ++ +E    L A+ 
Sbjct: 161 DRRLNHRPEVIQGVLGAECAEQLTAFF 187


>gi|323343460|ref|ZP_08083687.1| guanine deaminase [Prevotella oralis ATCC 33269]
 gi|323095279|gb|EFZ37853.1| guanine deaminase [Prevotella oralis ATCC 33269]
          Length = 156

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 21/118 (17%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
           M  +      M  A+  S   V           ++ ++G +I          +    HAE
Sbjct: 2   MKQTDL----MRRAIALSEQSVRNGGG--PFGAVVARNGEIIAEASNRVTIDHDPTAHAE 55

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           V A+ +A       +  G   Y + EPC      P C   I    + R+    D  D 
Sbjct: 56  VNAIRKAARELDTFDLSGCDIYTSCEPC------PMCLGAIYWAHLNRIYYANDRKDA 107


>gi|121534898|ref|ZP_01666717.1| CMP/dCMP deaminase, zinc-binding [Thermosinus carboxydivorans Nor1]
 gi|121306497|gb|EAX47420.1| CMP/dCMP deaminase, zinc-binding [Thermosinus carboxydivorans Nor1]
          Length = 147

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 52/159 (32%), Gaps = 43/159 (27%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
           M   ++D  FM      +     L      V  +IVKD  ++  G               
Sbjct: 1   MSRPTWDEYFMDITRVVALRSTCLRR---QVGAVIVKDKRLLTSGYNGAPRGLAHCEDVG 57

Query: 47  -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE  A+ +A   G    GAT Y T +PCS       C +
Sbjct: 58  CLRDTYHVPSGERHELCRGMHAEQNAIVQAALYGVAIEGATLYCTHQPCS------ACTK 111

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            II  GIRR+V     PD        + + + GI    +
Sbjct: 112 MIINAGIRRIVYEHPYPDPLAR----ELVQEAGIECVCL 146


>gi|114770250|ref|ZP_01447788.1| cytosine deaminase [alpha proteobacterium HTCC2255]
 gi|114549087|gb|EAU51970.1| cytosine deaminase [alpha proteobacterium HTCC2255]
          Length = 147

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 61/153 (39%), Gaps = 18/153 (11%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQ 58
           ++  D R +  A   ++  +G       +  ++ +   ++ +G       G P  H E+ 
Sbjct: 1   MNDDDKRLLRIAYNEAK--LGFEEGGCPIGSVLARGAEIVSQGRNQRVQKGDPIAHGEMD 58

Query: 59  ALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           AL +AG +   R  T Y +L PC     +      I++ GI RVV+  +           
Sbjct: 59  ALRKAGRQKTYRDTTLYTSLSPCMMCTGT------ILQFGIPRVVIGENKNFGGNE---- 108

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           ++L  KG+ V    + +    +  ++  + E  
Sbjct: 109 EFLRSKGVEVLIANDEDCIELMTKFINEKPELW 141


>gi|325856346|ref|ZP_08172062.1| guanine deaminase [Prevotella denticola CRIS 18C-A]
 gi|327312522|ref|YP_004327959.1| guanine deaminase [Prevotella denticola F0289]
 gi|325483530|gb|EGC86502.1| guanine deaminase [Prevotella denticola CRIS 18C-A]
 gi|326944415|gb|AEA20300.1| guanine deaminase [Prevotella denticola F0289]
          Length = 155

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 37/115 (32%), Gaps = 25/115 (21%)

Query: 8   ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
              M  A+  S    R   G          +I ++G +I  G            HAEV  
Sbjct: 4   EELMRRAIELSADSVRNGGG------PFGAVIARNGEIIAEGSNGVTIYNDPTAHAEVST 57

Query: 60  LEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           + +A ++       G   Y + EPC      P C   I    + ++    D  D 
Sbjct: 58  IRKACQKLNTFDLTGCEIYTSCEPC------PMCLGAIYWAHLDKIYYANDRKDA 106


>gi|323435986|ref|ZP_01049493.2| dCMP deaminase [Dokdonia donghaensis MED134]
 gi|321496301|gb|EAQ39465.2| dCMP deaminase [Dokdonia donghaensis MED134]
          Length = 142

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 36/151 (23%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTN-PSVACLIVKDGIVIGRGVTAYGGCP-------- 53
           + S   ++  A LR +R    L+  N   V  +IVKD ++I  G     G P        
Sbjct: 1   MGSKQHKYDIAYLRMAREWGKLSYCNRKQVGAIIVKDKMIISDGY---NGTPTGFENVCE 57

Query: 54  -----------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                      HAE  A+     + +   GAT Y+TL PC        C++ + + GI+R
Sbjct: 58  DEENNTKWYVLHAEANAILKVASSTQSCHGATLYITLSPC------KDCSKLVHQAGIKR 111

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           VV             G+++L + G+ +  + 
Sbjct: 112 VVY----HSAYKDLTGVKFLEKAGVEIVHLQ 138


>gi|260555502|ref|ZP_05827723.1| guanine deaminase [Acinetobacter baumannii ATCC 19606]
 gi|260412044|gb|EEX05341.1| guanine deaminase [Acinetobacter baumannii ATCC 19606]
          Length = 160

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 39/112 (34%), Gaps = 21/112 (18%)

Query: 8   ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
             F+  A+  +        G          +IVKDG VI  GV           HAE+ A
Sbjct: 5   QEFLRQAIELAYNNIEKG-GR-----PFGAVIVKDGKVIASGVNQILTTNDPTAHAELLA 58

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRS---PPCAQFIIECGIRRVVVCVDDPD 108
           +  A +    A     LE CS +      P C   +   GI+ V     + D
Sbjct: 59  IRAASQVLGTA----NLEGCSVFASGHPCPMCMAAMRLAGIKTVNYAYSNED 106


>gi|254818548|ref|ZP_05223549.1| hypothetical protein MintA_01421 [Mycobacterium intracellulare ATCC
           13950]
          Length = 251

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 63/169 (37%), Gaps = 16/169 (9%)

Query: 186 LRAQSDAILVGIGTVLADD---PELTC------RLNGLQEHSPMRIILDPHFKLSLDSKI 236
           LR  +D I+VG GTV  +     +L        +  G  E  P+ I+      L+ D  +
Sbjct: 67  LRELADVIVVGAGTVRIEGYSGAQLGAAQRQHRQARGQSEVPPLAIV-TKSGHLNRDMAV 125

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL-----LTILVGRGVTSLL 291
                + P+++                   ++ C   D +K+     L  L  RG+  +L
Sbjct: 126 FTRTEVPPLVLTCAAAAAQTRRLLSGV-CEVLDCSAGDPEKVDEAALLAALGARGLRRIL 184

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
            EGG  +  S I+  ++D + L  +  ++G          G L     C
Sbjct: 185 TEGGPMLLGSLIDRDMLDELCLTIAPYIVGGQARRIAAGPGQLLTGMRC 233


>gi|260943139|ref|XP_002615868.1| hypothetical protein CLUG_04750 [Clavispora lusitaniae ATCC 42720]
 gi|238851158|gb|EEQ40622.1| hypothetical protein CLUG_04750 [Clavispora lusitaniae ATCC 42720]
          Length = 315

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 45/142 (31%), Gaps = 39/142 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           ++DA FM  A   +            V C+IVKD  V+  G                   
Sbjct: 164 TWDAYFMRLA-DLAALRSNCMKR--RVGCVIVKDNRVVATGYNGTPRHLTNCNEGGCSRC 220

Query: 47  TAYGGCP---------HAEVQALEEAGEE---ARGATAYVTLEPCSHYGRSPPCAQFIIE 94
               G           HAE  AL EAG +      +  Y    PC        C+  I++
Sbjct: 221 NQGQGSGAGLSTCLCLHAEENALLEAGRDRIAGENSILYCNTCPCL------TCSIKIVQ 274

Query: 95  CGIRRVVVCVDDPDVRVSGRGL 116
            GIR+VV          S   +
Sbjct: 275 SGIRQVVYAQSYSMDERSHSVM 296


>gi|255931995|ref|XP_002557554.1| Pc12g07190 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582173|emb|CAP80346.1| Pc12g07190 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 227

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 56/169 (33%), Gaps = 35/169 (20%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVK---------DGIVIGRGVTAY-GGCPHAEVQA 59
           ++   L  +        TN  V  +++          D  ++  G T    G  HAE   
Sbjct: 11  YIKQCLSLAEKSPPR-PTNFRVGAVLLSRKDNDPTFTDDRILSTGYTMELAGNTHAEQCC 69

Query: 60  LE-----------EAGEEA-----RGATAYVTLEPCS-HYGRSPPCAQFIIEC------G 96
                        + GE       R    YVT+EPC      + PC Q I         G
Sbjct: 70  FANYAAVHKVPDDQVGEVLPVEPGRKLVMYVTMEPCGKRLSGNAPCVQRITRTTEGGREG 129

Query: 97  IRRVVVCVDDPDVRVSGRG-LQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
           I +V   V +P   V      + L+Q GI  + +   E +I   A+   
Sbjct: 130 IHKVYFGVKEPGTFVGESEGCRMLTQAGIEWEHVGGLEKEILTVAFAGH 178


>gi|86160056|ref|YP_466841.1| tRNA-adenosine deaminase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776567|gb|ABC83404.1| tRNA-adenosine deaminase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 160

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 48/119 (40%), Gaps = 18/119 (15%)

Query: 6   FDAR-FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
            D R  M  AL  +R           V  + + +G V+GRG  A         HAE+ A+
Sbjct: 1   MDEREAMQEALGLAREAAAR--GEVPVGAVALFEGRVVGRGANAREAARDPTAHAELLAI 58

Query: 61  EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           +EA          G T  VTLEPC+       CA  ++   I R+V    DP    +G 
Sbjct: 59  QEAARTLGRWRLTGVTLVVTLEPCAM------CAGAMVLARIDRLVYGASDPKAGCTGS 111


>gi|311085993|gb|ADP66075.1| hypothetical protein CWO_01335 [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
          Length = 130

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 17/110 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
             D  +M  AL+++ +          +  ++V    +IG G            HAE+ AL
Sbjct: 4   EKDKNWMKIALKYAYYAK--EKGEIPIGAILVFKERIIGIGWNSSISKNDPTAHAEIIAL 61

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
             AG++ +       T YVTL+PC        C   II+  I+R+V   +
Sbjct: 62  RGAGKKIKNYRLLNTTLYVTLQPCIM------CCGAIIQSRIKRLVFGAN 105


>gi|300120277|emb|CBK19831.2| unnamed protein product [Blastocystis hominis]
          Length = 155

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 59/174 (33%), Gaps = 34/174 (19%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           M +S  D +++  A   +  +V        + C+ VKD               HAE+ A+
Sbjct: 1   MNLSEIDDKYLELAYEEA--NVAFEEREVPIGCVFVKDN-----------ATLHAEMVAI 47

Query: 61  E----EAGEEA---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                  G +     G+T YVT+EPC        CA  I + G+ RVV    +      G
Sbjct: 48  SRTLGANGNDPTIFEGSTLYVTIEPCIM------CASAIAQIGVSRVVFGASNDRFGGCG 101

Query: 114 RGLQWLSQ----KG----IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
             L    Q     G     +   + +      L  +  R+ E       +   S
Sbjct: 102 SVLSLHDQNEFSAGHKHYEVTRHIQKERSIEILQRFYNRENEHAPENKKRKKGS 155


>gi|219681621|ref|YP_002468007.1| hypothetical protein YfhC [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471309|ref|ZP_05635308.1| hypothetical protein BaphL_01255 [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219624464|gb|ACL30619.1| hypothetical protein YfhC [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 161

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 17/110 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
             D  +M  AL+++ +          +  ++V    +IG G            HAE+ AL
Sbjct: 4   EKDKNWMKIALKYAYYAK--EKGEIPIGAILVFKERIIGIGWNSSISKNDPTAHAEIIAL 61

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
             AG++ +       T YVTL+PC        C   II+  I+R+V   +
Sbjct: 62  RGAGKKIKNYRLLNTTLYVTLQPCIM------CCGAIIQSRIKRLVFGAN 105


>gi|325679150|ref|ZP_08158742.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Ruminococcus albus 8]
 gi|324109155|gb|EGC03379.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Ruminococcus albus 8]
          Length = 159

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 54/164 (32%), Gaps = 33/164 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCP------ 53
           M   S+D  F+  A   S         N  V   IV +   ++  G              
Sbjct: 5   MNYISWDDYFLGIA-ELS--AARSKDPNTQVGACIVSEENKILSVGYNGMPAGCNDDEMP 61

Query: 54  ----------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                           HAE+ A+  +  + +G+  YV+L PC+       CA+ II+ GI
Sbjct: 62  WGREGDFLDTKYPFVCHAELNAILNSNHDLKGSRIYVSLFPCNE------CAKAIIQSGI 115

Query: 98  RRVVVCVDDP-DVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
           + V+   D   D   +          G+   ++ +      L  
Sbjct: 116 KEVIYTCDKYADTDGTKASKMMFKMAGVKTRQIKQEHFVKILPM 159


>gi|282859489|ref|ZP_06268594.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella bivia JCVIHMP010]
 gi|282587717|gb|EFB92917.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella bivia JCVIHMP010]
          Length = 144

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 55/150 (36%), Gaps = 38/150 (25%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
            D R++  A  ++            V  L+VKD ++I  G     G P            
Sbjct: 8   LDYRYLRMARIWAENSYCKRR---QVGALVVKDKMIISDGY---NGTPSGFENVCEDDNN 61

Query: 54  -------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A   L  +G  + G+T YVT  PC        CA+ II+ GI+R+V  
Sbjct: 62  ITKPYVLHAEANAITKLARSGNNSEGSTLYVTASPCIE------CAKLIIQAGIKRLVYA 115

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
                      G+  L +  I V  +   E
Sbjct: 116 EKYRLT----DGIDLLERANIEVIHIDFEE 141


>gi|229492640|ref|ZP_04386443.1| tRNA-specific adenosine deaminase [Rhodococcus erythropolis SK121]
 gi|229320626|gb|EEN86444.1| tRNA-specific adenosine deaminase [Rhodococcus erythropolis SK121]
          Length = 153

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 58/154 (37%), Gaps = 25/154 (16%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG----CPHAEVQA 59
           + D R + AA+  +R     +  +  V  ++   DG+ + R   A         HAE+ A
Sbjct: 4   ADDQRMIRAAIVAARSA---SDADVPVGAVVFDADGVEVARASNAREASSDPTAHAEILA 60

Query: 60  LEEA------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           L  A      G    GAT  VTLEPC        CA  ++   + RVV    +P     G
Sbjct: 61  LRAAAKTYGDGWRLEGATLAVTLEPC------TMCAGALVLARVSRVVFGAWEPKTGAVG 114

Query: 114 RGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
                +  K +     +   ++E E    L  + 
Sbjct: 115 SLWDVVRDKRLTYRPQVRGGVLEDECAGLLEDFF 148


>gi|296271673|ref|YP_003654304.1| CMP/dCMP deaminase zinc-binding protein [Arcobacter nitrofigilis
           DSM 7299]
 gi|296095848|gb|ADG91798.1| CMP/dCMP deaminase zinc-binding protein [Arcobacter nitrofigilis
           DSM 7299]
          Length = 144

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 46/123 (37%), Gaps = 36/123 (29%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
           D  F++ A   +     ++     V  +IVKDG ++  G                     
Sbjct: 4   DKNFINIAHEIASASKCVSK---QVGAVIVKDGRILSTGYNGTPAGYVNCKEHWNDSYTK 60

Query: 54  -----------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                      HAE+ A+      G    GAT YVTLEPCS   ++      +I  GI+R
Sbjct: 61  EHHDWSKTYEIHAEMNAIIWAARKGISIEGATIYVTLEPCSECSKN------LIAAGIQR 114

Query: 100 VVV 102
           +V 
Sbjct: 115 IVF 117


>gi|119486171|ref|ZP_01620231.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Lyngbya
           sp. PCC 8106]
 gi|119456662|gb|EAW37791.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Lyngbya
           sp. PCC 8106]
          Length = 144

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 26/114 (22%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
           +++ D  +M  AL  ++              ++VK+  ++ +G            HAE+ 
Sbjct: 1   MTAED--YMKIALEEAKKGDMPY------GAVLVKEDQIVVQGHNTAQRDNDVTAHAEIN 52

Query: 59  ALEE--------AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
            L +        + +  +G T Y T EPC      P CA   +  G+  +V   
Sbjct: 53  VLRQFTLENKSYSIDALKGYTLYTTCEPC------PMCAAACVWVGLSEIVFGA 100


>gi|86749931|ref|YP_486427.1| twin-arginine translocation pathway signal [Rhodopseudomonas
           palustris HaA2]
 gi|86572959|gb|ABD07516.1| Twin-arginine translocation pathway signal [Rhodopseudomonas
           palustris HaA2]
          Length = 176

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 9/98 (9%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           ++  D + M+ A+   R    +  T  +   +IV+DG V+     +         HAEV 
Sbjct: 19  ITEQDRQHMTQAIALMRKAGVVEKTGGAFGAVIVRDGEVLAATGNSVLRDNDPSAHAEVN 78

Query: 59  ALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQF 91
           A+  A ++      RGAT Y + E C     +   A+ 
Sbjct: 79  AIRAACKKVGAPNLRGATMYTSCECCPMCYATAYWARL 116


>gi|295399242|ref|ZP_06809224.1| ComE operon protein 2 [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110156|ref|YP_003988472.1| ComE operon protein 2 [Geobacillus sp. Y4.1MC1]
 gi|294978708|gb|EFG54304.1| ComE operon protein 2 [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215257|gb|ADP73861.1| ComE operon protein 2 [Geobacillus sp. Y4.1MC1]
          Length = 151

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 56/151 (37%), Gaps = 34/151 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------ 53
           M   ++D  FM+ +   +      T T  +V   IV+D  +I  G      G        
Sbjct: 1   MERITWDQYFMAQSHLLALRS---TCTRLAVGATIVRDKRIIAGGYNGSIAGGAHCIDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A+ +    G    GA  YVT  PC H      C + II+ GIR
Sbjct: 58  CYIIDGHCVRTIHAEMNAIIQCAKFGVPTEGAEMYVTHFPCLH------CCKAIIQSGIR 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            V    D  +   +   L+   Q  + V+ +
Sbjct: 112 AVYYAQDYKNDPYA---LELFQQANVRVEHV 139


>gi|218674406|ref|ZP_03524075.1| CMP/dCMP deaminase zinc-binding protein [Rhizobium etli GR56]
          Length = 157

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 53/148 (35%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA- 63
           RFM  AL  +R   G     P +  ++V D I + R             HAE+ A+  A 
Sbjct: 11  RFMEMALEEAR-AAGERGEVP-IGAVVVIDDIAVSRSGNRTRELNDVTAHAEIAAIRLAC 68

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW- 118
                E   GA  YVTLEPC        CA  I    IRR+    +DP       G+++ 
Sbjct: 69  EALGQERLAGADLYVTLEPC------TMCAAAISFARIRRLYYGAEDPKGGAVDNGVRFY 122

Query: 119 ----LSQKGIIVDRMMESEGKIFLHAYL 142
                     +     E +    L  + 
Sbjct: 123 AQPTCHHAPEVYSGFNEVQSAEILRTFF 150


>gi|319941545|ref|ZP_08015871.1| hypothetical protein HMPREF9464_01090 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804915|gb|EFW01757.1| hypothetical protein HMPREF9464_01090 [Sutterella wadsworthensis
           3_1_45B]
          Length = 241

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 9/119 (7%)

Query: 213 GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY--- 269
           G ++  P+ ++ DP  +L      + T     V ++    D       R+  ++ ++   
Sbjct: 80  GDRQDRPLAVVFDPKGRLQFSKNGLPTGEHV-VAVLDPKIDEAHLARLRRAGVSYVFQGD 138

Query: 270 ----CDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
                +   L   L  L    GV  LL+EGG  +  SF+ + L+  I +     V G  
Sbjct: 139 GAECTEREKLSAALAALEETFGVKRLLLEGGGVLNGSFLAAGLIKEISVLVCPTVDGRS 197


>gi|212703407|ref|ZP_03311535.1| hypothetical protein DESPIG_01450 [Desulfovibrio piger ATCC 29098]
 gi|212673152|gb|EEB33635.1| hypothetical protein DESPIG_01450 [Desulfovibrio piger ATCC 29098]
          Length = 144

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 41/121 (33%), Gaps = 18/121 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG----CPHAEVQALEEAGE 65
           M  AL  +R           V  ++V  DG ++ R             HAE+ AL  AG 
Sbjct: 1   MRLALDEARQAA--REDEVPVGAVLVAADGRLLARAHNRPVALHDPTAHAEILALRAAGA 58

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                   G    VTLEPC+       CA  ++   +  VV    D          + L 
Sbjct: 59  ASGNYRLGGGVLVVTLEPCAM------CAAALVHARLAGVVYGAADRLAGAVTSCTETLD 112

Query: 121 Q 121
           Q
Sbjct: 113 Q 113


>gi|171691995|ref|XP_001910922.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945946|emb|CAP72747.1| unnamed protein product [Podospora anserina S mat+]
          Length = 353

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 50/152 (32%), Gaps = 47/152 (30%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           S+DA FM+ A   +            V C+IV+D  VI  G     G P           
Sbjct: 195 SWDAYFMALA-ELAAQRANCMKR--RVGCVIVRDKRVISTGY---NGTPRGLVNCGEGGC 248

Query: 54  -------------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFI 92
                              HAE  AL EAG E    GA  Y T  PC        C+  I
Sbjct: 249 DRCNAGQGSGHGLTTCLCIHAEENALLEAGRERVREGAVLYCTTHPCL------TCSIKI 302

Query: 93  IECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           ++ GI  VV         + G       + G+
Sbjct: 303 VQVGIGEVVYSHGYS---MDGDTAAVFREAGV 331


>gi|169633781|ref|YP_001707517.1| guanine deaminase (Guanase) (guanine aminase) (guanine
           aminohydrolase) (GAH) (GDEase) [Acinetobacter baumannii
           SDF]
 gi|169152573|emb|CAP01555.1| Guanine deaminase (Guanase) (Guanine aminase) (Guanine
           aminohydrolase) (GAH) (GDEase) [Acinetobacter baumannii]
          Length = 160

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 39/112 (34%), Gaps = 21/112 (18%)

Query: 8   ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
             F+  A+  +        G          +IVKDG VI  GV           HAE+ A
Sbjct: 5   QEFLRQAIELAYNNIEKG-GR-----PFGAVIVKDGKVIASGVNQILTTNDPTAHAELLA 58

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRS---PPCAQFIIECGIRRVVVCVDDPD 108
           +  A +    A     LE CS +      P C   +   GI+ V     + D
Sbjct: 59  IRAASQVLGTA----NLEGCSVFASGHPCPMCMAAMRLAGIKTVNYAYSNED 106


>gi|117929225|ref|YP_873776.1| tRNA-adenosine deaminase [Acidothermus cellulolyticus 11B]
 gi|117649688|gb|ABK53790.1| tRNA-adenosine deaminase [Acidothermus cellulolyticus 11B]
          Length = 144

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 52/147 (35%), Gaps = 23/147 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----CPHAEVQALEEA-- 63
           M  AL+ +     +      V  +++   G V+GRG            HAE+ AL  A  
Sbjct: 1   MRLALQEAARAEKVADV--PVGAIVLGPGGDVLGRGHNQREAAADPTAHAEIVALRAAAW 58

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ--- 117
                   G T  VTLEPC        CA  I+   + R+V    DP     G       
Sbjct: 59  RLGRWRLDGCTLVVTLEPC------TMCAGAIVLARLDRLVYGAVDPKSGAVGSLWDVVR 112

Query: 118 --WLSQKGIIVDRMMESEGKIFLHAYL 142
              L+ +  ++  ++  E    L  + 
Sbjct: 113 DRRLNHRPEVIAGVLADECGQVLRTFF 139


>gi|228469636|ref|ZP_04054616.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
           uenonis 60-3]
 gi|228308829|gb|EEK17530.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
           uenonis 60-3]
          Length = 162

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 52/147 (35%), Gaps = 32/147 (21%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA------------- 48
             +  D R++  A  ++            V  LIV + ++I  G                
Sbjct: 15  KQTILDRRYLRMARIWAENSYCQRR---QVGALIVHNQMIISDGYNGTPSGFENVCEDDE 71

Query: 49  ---YGGCPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  A+     +G    GAT Y+T  PC        CA+ II+  IRRVV 
Sbjct: 72  GITKPYVLHAEANAITKVAASGNNCTGATIYITASPCLE------CAKLIIQSRIRRVVY 125

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRM 129
                       GL+ L + G+ V  +
Sbjct: 126 GEQYRLT----DGLELLKRAGVEVVYI 148


>gi|319789749|ref|YP_004151382.1| CMP/dCMP deaminase zinc-binding protein [Thermovibrio ammonificans
           HB-1]
 gi|317114251|gb|ADU96741.1| CMP/dCMP deaminase zinc-binding protein [Thermovibrio ammonificans
           HB-1]
          Length = 148

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 47/138 (34%), Gaps = 39/138 (28%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
           MP  S+D  FMS A   +     L      V  ++VKD  +I  G               
Sbjct: 1   MPRPSWDEYFMSIAQMVATRSTCLRR---QVGAVLVKDKRIISTGYNGPPSGLKHPEEVG 57

Query: 47  -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE  A+ +A   G   +G+  Y T  PCS       C +
Sbjct: 58  CLREKLGIPSGERHELCRGLHAEQNAIIQAALHGVSTKGSVLYCTHCPCS------LCVK 111

Query: 91  FIIECGIRRVVVCVDDPD 108
            +I  GI +V+     PD
Sbjct: 112 MLINAGIEKVIYKEGYPD 129


>gi|162450858|ref|YP_001613225.1| putative zinc-binding hydrolase [Sorangium cellulosum 'So ce 56']
 gi|161161440|emb|CAN92745.1| putative zinc-binding hydrolase [Sorangium cellulosum 'So ce 56']
          Length = 177

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 56/154 (36%), Gaps = 23/154 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQ 58
           +S DAR+M      +       + +  V  L+V   G V+ RG            HAEV 
Sbjct: 22  ASVDARWMRE--ALAEAEAAAGAGDVPVGALVVDAAGTVLARGRNRREIDQDPTGHAEVD 79

Query: 59  ALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL  A          GAT Y TLEPC      P CA  ++   I R+V    DP      
Sbjct: 80  ALRAAARRLGHWRLEGATVYATLEPC------PMCAGALVNARIARLVYGCPDPKAGAVD 133

Query: 114 RGL-----QWLSQKGIIVDRMMESEGKIFLHAYL 142
                     L+ +  +   ++  E    L A+ 
Sbjct: 134 TLFAIGRDNRLNHRFAVTSGVLADECAGVLRAFF 167


>gi|157964979|ref|YP_001499803.1| cytosine deaminase [Rickettsia massiliae MTU5]
 gi|157844755|gb|ABV85256.1| Cytosine deaminase [Rickettsia massiliae MTU5]
          Length = 190

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 64/188 (34%), Gaps = 30/188 (15%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTN-PSVACLIVK--DGIVIGRGVT----AYGGCPHAE 56
           ++F+  FM  AL+ ++        N   V  +IV   +  +I               HAE
Sbjct: 11  ANFNNFFMEQALKQAKIAF---DKNEVPVGAVIVDRLNQKIIASTHNNTEAKNNALYHAE 67

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ EA      +       YVTLEPC+       CA  I    ++R+     D     
Sbjct: 68  IIAINEACNLISSKNLNDYDIYVTLEPCAM------CAAAIAHSRLKRLFYGASDSKHGA 121

Query: 112 SGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM 166
               L++ +      +  I   ++  +  + +  +  R       +    + + D++I  
Sbjct: 122 VESNLRYFNSSACFHRPEIYSGILAEDSGLLMKEFFKRIRT----VISSYSDNLDDVIPA 177

Query: 167 AGCGSVPI 174
                   
Sbjct: 178 KAGIHKKF 185


>gi|13542119|ref|NP_111807.1| deoxycytidylate deaminase [Thermoplasma volcanium GSS1]
 gi|14325550|dbj|BAB60453.1| dCMP deaminase [Thermoplasma volcanium GSS1]
          Length = 170

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 56/172 (32%), Gaps = 47/172 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNP---SVACLIVKDGIVIGRGV--------------- 46
           S+D  FM  A      ++  + TN     V  +IVKD  V+  G                
Sbjct: 8   SWDEYFMRMA------YLAASRTNCIRRKVGAVIVKDKNVLATGYNGPPSGTAHCDVVGC 61

Query: 47  ------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQF 91
                              HAE  A+ +A   G   + +T YVT  PC        C++ 
Sbjct: 62  IREDLKIPSGERHELCRGLHAEQNAIIQAAVHGVSIKDSTIYVTTHPC------VVCSKM 115

Query: 92  IIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT 143
           I+   I+ +V     PD       +   S   +    + E E +  +  +  
Sbjct: 116 IMNAQIKEIVYAEGYPD--ELAELMLLESNVKVRRFSLPEKEVRAMIGDFYY 165


>gi|332707396|ref|ZP_08427446.1| cytosine/adenosine deaminase [Lyngbya majuscula 3L]
 gi|332353887|gb|EGJ33377.1| cytosine/adenosine deaminase [Lyngbya majuscula 3L]
          Length = 150

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 24/112 (21%)

Query: 11  MSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           M+ A+  S    R   G          ++VKDG +I +             HAE+ A+ +
Sbjct: 1   MNEAIALSVISVRSGKGG-----PFGAVVVKDGEIIAKAHNQVTSTNDPTAHAEIVAIRD 55

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           A +     +  G   Y + EPC      P C   I    + +V       D 
Sbjct: 56  ACKVLQTFQLTGCELYTSCEPC------PMCLGAIYWARLDKVYYANTKADA 101


>gi|291520267|emb|CBK75488.1| Deoxycytidylate deaminase [Butyrivibrio fibrisolvens 16/4]
          Length = 161

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 53/147 (36%), Gaps = 34/147 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV-------------TAYG 50
           S+D  FM  A+      +     N  V   IV +D  ++  G               A  
Sbjct: 10  SWDEYFMGVAV---LSGMRSKDPNTQVGACIVSQDNKILSMGYNGFPNGCSDDEFPWARV 66

Query: 51  GCP---------HAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           G P         H+E+ A+    G    G+  YV+L PC+       CA+ II+ GI+ +
Sbjct: 67  GDPLENKYFYTTHSELNAILNYRGGSLEGSKLYVSLFPCNE------CAKAIIQSGIKTI 120

Query: 101 VVCVD-DPDVRVSGRGLQWLSQKGIIV 126
           +   D   +        + L   G+  
Sbjct: 121 IYDSDKYENTPSVIASKRMLRAAGVEF 147


>gi|241896673|ref|ZP_04783969.1| competence protein ComEB [Weissella paramesenteroides ATCC 33313]
 gi|241870154|gb|EER73905.1| competence protein ComEB [Weissella paramesenteroides ATCC 33313]
          Length = 157

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 31/140 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
           +++  FM  A+  +      T T   V  ++VKDG +I  G      G P          
Sbjct: 7   AWEKYFMLQAIMLAARS---TCTRLHVGAVVVKDGRIIASGYNGSVSGTPHCTEVGDLVV 63

Query: 54  --------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  A   L + G  A GA  +VT  PC H      C + +++ GI+++  
Sbjct: 64  DGHCIRAVHAEQNALMQLAKMGISADGAQVFVTDFPCVH------CTKLLLQAGIKKINY 117

Query: 103 CVDDPDVRVSGRGLQWLSQK 122
             +  +       LQ  +  
Sbjct: 118 LRNYHNDDFVAELLQTKNVA 137


>gi|319795234|ref|YP_004156874.1| cmp/dcmp deaminase zinc-binding protein [Variovorax paradoxus EPS]
 gi|315597697|gb|ADU38763.1| CMP/dCMP deaminase zinc-binding protein [Variovorax paradoxus EPS]
          Length = 176

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 51/142 (35%), Gaps = 19/142 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV--TAYGG--CPHAE 56
            +   D R++  A+     H+     N     +IV  DG V+      T   G    HAE
Sbjct: 17  TLDERDGRYLRKAI--GWSHLARRQGNRPFGSVIVSADGEVLAEAYNNTGETGDCTGHAE 74

Query: 57  VQALEE-AG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
             A+   AG     +   GAT Y + EPC        CA  I    I RVV  +D   +R
Sbjct: 75  TNAIRALAGRGISRDTLAGATLYASGEPC------VMCAGAIFWSNIGRVVFGIDAERLR 128

Query: 111 VSGRGLQWLSQKGIIVDRMMES 132
           V     Q      +    +  +
Sbjct: 129 VFRGERQDQRDAELSCRDVFRA 150


>gi|332874597|ref|ZP_08442498.1| putative guanine deaminase [Acinetobacter baumannii 6014059]
 gi|322507943|gb|ADX03397.1| guaD [Acinetobacter baumannii 1656-2]
 gi|323517535|gb|ADX91916.1| CMP/dCMP deaminase zinc-binding protein [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332737235|gb|EGJ68161.1| putative guanine deaminase [Acinetobacter baumannii 6014059]
          Length = 160

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 39/112 (34%), Gaps = 21/112 (18%)

Query: 8   ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
             F+  A+  +        G          +IVKDG VI  GV           HAE+ A
Sbjct: 5   QEFLRQAIELAYNNIEKG-GR-----PFGAVIVKDGKVIASGVNQILTTNDPTAHAELLA 58

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRS---PPCAQFIIECGIRRVVVCVDDPD 108
           +  A +    A     LE CS +      P C   +   GI+ V     + D
Sbjct: 59  IRAASQVLGTA----NLEGCSVFASGHPCPMCMAAMRLAGIKTVNYAYSNED 106


>gi|77917942|ref|YP_355757.1| putative deaminase [Pelobacter carbinolicus DSM 2380]
 gi|77544025|gb|ABA87587.1| tRNA-adenosine deaminase [Pelobacter carbinolicus DSM 2380]
          Length = 159

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 66/166 (39%), Gaps = 22/166 (13%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE- 65
           M  AL  +     L      V  ++VKDG++IGRG     T+     HAE+ A+ +A   
Sbjct: 1   MQEALVEASAAARL--GEVPVGAVVVKDGMIIGRGHNLRETSNDPTTHAEMIAIRQAAAA 58

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL----- 116
                  G T YVTLEPC        C   II   I R+V    DP V   G        
Sbjct: 59  IDSWRLIGCTLYVTLEPC------VMCMGAIILARIPRLVFGSRDPRVGAVGSIFDLSRD 112

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
           +  + +  + + ++  E    L  +  +   ++     K A S+D 
Sbjct: 113 ERFNHQVAVTEGVLALESSDMLSGFFRQLRAEKKSRKRKAADSEDQ 158


>gi|295109528|emb|CBL23481.1| Deoxycytidylate deaminase [Ruminococcus obeum A2-162]
          Length = 164

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 51/147 (34%), Gaps = 34/147 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-------------TAYG 50
           S+D  FM  A+      +     N  V   IV  D  ++  G               A  
Sbjct: 13  SWDEYFMGVAM---LSGMRSKDPNSQVGACIVSEDNKILSMGYNGFPKGCSDDEFPWARE 69

Query: 51  GCP---------HAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           G P         H+E+ A+    G    GA  YV+L PC+       CA+ II+ GI+ V
Sbjct: 70  GEPLDTKYLYVTHSELNAILNYRGGSLEGAKLYVSLFPCNE------CAKAIIQAGIKTV 123

Query: 101 VVCVD-DPDVRVSGRGLQWLSQKGIIV 126
           +   D            + +   G+  
Sbjct: 124 IYDCDKYEHTPSVIASKRMMDAAGVRY 150


>gi|288871336|ref|ZP_06117248.2| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Clostridium
           hathewayi DSM 13479]
 gi|288863846|gb|EFC96144.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Clostridium
           hathewayi DSM 13479]
          Length = 233

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 65/187 (34%), Gaps = 25/187 (13%)

Query: 197 IGTVLADD-------PELTCRLNGLQE------HSPMRII-LDPHFKLSLDSKIIK--TA 240
            G V  DD       P L  +   + E       +PM  + +DP  +L  +   +     
Sbjct: 44  SGRVTTDDNFTMYRRPALDEKAPEVPEGDFVAEKAPMYYVSIDPSGRLGWEENTLTYIDT 103

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK--KLLTILVGR-GVTSLLVEGGAA 297
               + ++TE          RK  I+ I    + L   + LT L    G+ +L++ GG  
Sbjct: 104 TAHVLEVLTEQASNAYKAFLRKLGISYIIAGKKTLDYSEALTKLKRLFGIETLMLGGGGV 163

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYFGSD-VC 351
           +  SFI + + D I +  +    G     +  +            F     D    D V 
Sbjct: 164 LNWSFIQAGMCDEISVVIAPCADGSAETQTLFQARAGLSTEEPVGFTLKSADVLEGDAVW 223

Query: 352 LEYIGKN 358
           L Y+ K 
Sbjct: 224 LRYLVKE 230


>gi|218461412|ref|ZP_03501503.1| putative nitrogen fixation symbiosis related protein [Rhizobium
           etli Kim 5]
          Length = 157

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 54/148 (36%), Gaps = 22/148 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA- 63
           RFM  AL  +R   G     P +  ++V D I + R             HAE+ A+  A 
Sbjct: 11  RFMEMALEEAR-AAGERGEVP-IGAVVVIDDIAVSRSGNRTRELNDVTAHAEIAAIRLAC 68

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW- 118
                E   GA  YVTLEPC        CA  I    +RR+    +DP       G+++ 
Sbjct: 69  EALGQERLAGADLYVTLEPC------TMCAAAISFARVRRLYYGAEDPKGGAVDNGVRFY 122

Query: 119 ----LSQKGIIVDRMMESEGKIFLHAYL 142
                     +   + E +    L  + 
Sbjct: 123 AQPTCHHAPEVYSGLNEVQSAEILRKFF 150


>gi|45358432|ref|NP_987989.1| cytidine/deoxycytidylate deaminase [Methanococcus maripaludis S2]
 gi|44921190|emb|CAF30425.1| Cytidine/deoxycytidylate deaminase, zinc-binding region related
           protein [Methanococcus maripaludis S2]
          Length = 141

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 55/147 (37%), Gaps = 20/147 (13%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGEE 66
           M  A++ +     L      +  ++V +  +IGRG            HAE+ ALE AG  
Sbjct: 1   MDEAVKEANLS--LKEGGIPIGAVLVYENKIIGRGHNRRVQNNSAILHAEMDALENAGRL 58

Query: 67  A----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                +    Y TL PC        C+  ++   I++VV+  +   +         L + 
Sbjct: 59  TSDVYKNCELYTTLSPCIM------CSGAVLLYKIKKVVIGENKTFLGAE----DLLIKN 108

Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKR 149
           G+ V+ + +      +  ++    +  
Sbjct: 109 GVAVEVLNDERCVKMMKEFIENNPKLW 135


>gi|148546319|ref|YP_001266421.1| CMP/dCMP deaminase, zinc-binding [Pseudomonas putida F1]
 gi|148510377|gb|ABQ77237.1| tRNA-adenosine deaminase [Pseudomonas putida F1]
 gi|313497401|gb|ADR58767.1| CMP/dCMP deaminase zinc-binding protein [Pseudomonas putida BIRD-1]
          Length = 159

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  ++V+ G VIG+G            HAE+ A+  A          G+T YVTLEPCS
Sbjct: 32  PVGAVLVQHGQVIGQGFNRPIIDSDPSAHAEMVAIRAAARSASNYRLPGSTLYVTLEPCS 91

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  CA  I+   + RVV    +P   +     Q     +L+ + ++   ++  E  
Sbjct: 92  M------CAGLIVHSRVMRVVFGALEPKAGIVQSQGQFFGQGFLNHRVMVEGGVLAQECG 145

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 146 QILSDFF 152


>gi|313905030|ref|ZP_07838400.1| dCMP deaminase [Eubacterium cellulosolvens 6]
 gi|313470100|gb|EFR65432.1| dCMP deaminase [Eubacterium cellulosolvens 6]
          Length = 162

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 37/148 (25%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
           S+D  FM+ A R +   +     N  V   IV  D  ++  G                  
Sbjct: 10  SWDEYFMAVA-RLA--GMRSKDPNSQVGSCIVSPDNKILSIGYNGFPRGCSDEEFPWSRE 66

Query: 47  ------TAYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    H+E+ A+    G    G+  YV+L PC+       CA+ II+ GI+ 
Sbjct: 67  DEDPLRTKYVYVTHSELNAILNYRGGSLEGSKLYVSLFPCNE------CAKAIIQAGIKT 120

Query: 100 VVVCVDDPD--VRVSGRGLQWLSQKGII 125
           V+   +  +    V+   +   +  G+ 
Sbjct: 121 VIYAENKYEGTPAVTASQM-MFAAAGVE 147


>gi|158321591|ref|YP_001514098.1| CMP/dCMP deaminase zinc-binding [Alkaliphilus oremlandii OhILAs]
 gi|158141790|gb|ABW20102.1| CMP/dCMP deaminase zinc-binding [Alkaliphilus oremlandii OhILAs]
          Length = 145

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 57/156 (36%), Gaps = 45/156 (28%)

Query: 5   SFDARFMSAA-LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----------------- 46
           S+D  FM  A +  +R           V  ++VKD  V+  G                  
Sbjct: 4   SWDEYFMEMAEIVKTRSTCLRRQ----VGAVVVKDRRVLASGYNGAPTGLKHCEETGCLR 59

Query: 47  ----------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFII 93
                            HAE  A+ +A   G +   AT YVT +PC        CA+ +I
Sbjct: 60  DRLGIPSGQRHELCRGLHAEQNAIIQASLHGVKLEDATIYVTHQPCII------CAKMVI 113

Query: 94  ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
             GI +VV   D PD       LQ L + GI + ++
Sbjct: 114 NAGINKVVFKGDYPD----ELSLQMLEEAGIQLVKV 145


>gi|282875983|ref|ZP_06284850.1| ComE operon protein 2 [Staphylococcus epidermidis SK135]
 gi|281295008|gb|EFA87535.1| ComE operon protein 2 [Staphylococcus epidermidis SK135]
          Length = 153

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 52/148 (35%), Gaps = 34/148 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M    ++  FM+ +   +      T    SV   IVKD  +I  G               
Sbjct: 1   MERIKWEEYFMAQSHLLALRS---TCKRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+  L +    G    GAT YVT  PC +      C + II+ GI+
Sbjct: 58  CLIEDGHCIRTIHAEMNTLLQCAKQGVSTEGATIYVTHFPCLN------CTKSIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            +    D  +   +   ++ L Q GI  
Sbjct: 112 TIYYAQDYHNHDYA---IKLLKQSGIEY 136


>gi|84495278|ref|ZP_00994397.1| possible cytidine and deoxycytidylate deaminase [Janibacter sp.
           HTCC2649]
 gi|84384771|gb|EAQ00651.1| possible cytidine and deoxycytidylate deaminase [Janibacter sp.
           HTCC2649]
          Length = 143

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 45/122 (36%), Gaps = 18/122 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA-- 63
           M  AL  +    G     P V  +++   G VIG G            HAEV AL  A  
Sbjct: 1   MRHALDLAVRA-GSAGDVP-VGAVVLDPGGAVIGEGWNLREVDADPTAHAEVVALRAAAR 58

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                     T  VTLEPC      P CA   +   I R+V+   DP +  +G     + 
Sbjct: 59  HTGSWRLEDCTLVVTLEPC------PMCAGAAMLARISRIVLGAWDPKLGATGSVWDVVR 112

Query: 121 QK 122
            +
Sbjct: 113 DR 114


>gi|89519331|gb|ABD75808.1| putative cytosine/adenosine deaminase [uncultured bacterium]
          Length = 163

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 16/112 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA 63
            ++M+ AL+ +    G+    P +  +IV  G +I R      T      HAE  A+   
Sbjct: 11  EKYMAEALKEAELA-GIRGDKP-IGAVIVHGGNIIARSSNRFHTLQSPVAHAETTAIFAC 68

Query: 64  G---EEARG-ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
               E+ +G  T Y T+EPC     +      I+  GIR +V  V D  +++
Sbjct: 69  APYLEQYKGECTLYTTVEPCVMCLGT------IVIAGIRHIVFGVKDKFMQM 114


>gi|323348302|gb|EGA82551.1| Dcd1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 272

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 54/148 (36%), Gaps = 41/148 (27%)

Query: 5   SFDARFMSAA-LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG---------GCP- 53
           S+D+ FM  A L  SR +         V C+IV++  VI  G              GCP 
Sbjct: 122 SWDSYFMKLATLAASRSNCMKR----RVGCVIVRECRVIATGYNGTPRHLTNCFNGGCPR 177

Query: 54  ---------------HAEVQALEEAGEEARG--ATAYVTLEPCSHYGRSPPCAQFIIECG 96
                          HAE  AL EAG +  G  AT Y    PC        C+  I++ G
Sbjct: 178 CNDGDSRNLHTCLCLHAEENALLEAGRDRVGQNATLYCDTCPCL------TCSVKIVQTG 231

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           I  VV        R+     + L   GI
Sbjct: 232 ISEVVYSQSY---RMDEESFKVLKNAGI 256


>gi|259146902|emb|CAY80158.1| Dcd1p [Saccharomyces cerevisiae EC1118]
          Length = 312

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 54/148 (36%), Gaps = 41/148 (27%)

Query: 5   SFDARFMSAA-LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG---------GCP- 53
           S+D+ FM  A L  SR +         V C+IV++  VI  G              GCP 
Sbjct: 162 SWDSYFMKLATLAASRSNCMKR----RVGCVIVRECRVIATGYNGTPRHLTNCFNGGCPR 217

Query: 54  ---------------HAEVQALEEAGEEARG--ATAYVTLEPCSHYGRSPPCAQFIIECG 96
                          HAE  AL EAG +  G  AT Y    PC        C+  I++ G
Sbjct: 218 CNDGDSRNLHTCLCLHAEENALLEAGRDRVGQNATLYCDTCPCL------TCSVKIVQTG 271

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           I  VV        R+     + L   GI
Sbjct: 272 ISEVVYSQSY---RMDEESFKVLKNAGI 296


>gi|238855364|ref|ZP_04645676.1| tRNA-specific adenosine deaminase [Lactobacillus jensenii 269-3]
 gi|260664920|ref|ZP_05865771.1| tRNA-adenosine deaminase [Lactobacillus jensenii SJ-7A-US]
 gi|282934594|ref|ZP_06339841.1| tRNA-specific adenosine deaminase [Lactobacillus jensenii 208-1]
 gi|238832025|gb|EEQ24350.1| tRNA-specific adenosine deaminase [Lactobacillus jensenii 269-3]
 gi|260561403|gb|EEX27376.1| tRNA-adenosine deaminase [Lactobacillus jensenii SJ-7A-US]
 gi|281301346|gb|EFA93643.1| tRNA-specific adenosine deaminase [Lactobacillus jensenii 208-1]
          Length = 176

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 16/101 (15%)

Query: 30  SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR-----GATAYVTLEPC 79
            +  ++V  DG VIGRG            HAE+ A+ EA +          + +VTLEPC
Sbjct: 28  PIGAIVVAPDGQVIGRGYNRRELDNIATHHAEILAINEACKNLNSWRLIDCSLFVTLEPC 87

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           +       CA  II   ++ V     D     SG  +   +
Sbjct: 88  AM------CAGAIINARLKEVFYGAPDHKAGASGSVVDLFA 122


>gi|190405923|gb|EDV09190.1| dCMP deaminase [Saccharomyces cerevisiae RM11-1a]
 gi|256269017|gb|EEU04358.1| Dcd1p [Saccharomyces cerevisiae JAY291]
 gi|323333286|gb|EGA74684.1| Dcd1p [Saccharomyces cerevisiae AWRI796]
 gi|323337344|gb|EGA78597.1| Dcd1p [Saccharomyces cerevisiae Vin13]
 gi|323354690|gb|EGA86525.1| Dcd1p [Saccharomyces cerevisiae VL3]
          Length = 312

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 54/148 (36%), Gaps = 41/148 (27%)

Query: 5   SFDARFMSAA-LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG---------GCP- 53
           S+D+ FM  A L  SR +         V C+IV++  VI  G              GCP 
Sbjct: 162 SWDSYFMKLATLAASRSNCMKR----RVGCVIVRECRVIATGYNGTPRHLTNCFNGGCPR 217

Query: 54  ---------------HAEVQALEEAGEEARG--ATAYVTLEPCSHYGRSPPCAQFIIECG 96
                          HAE  AL EAG +  G  AT Y    PC        C+  I++ G
Sbjct: 218 CNDGDSRNLHTCLCLHAEENALLEAGRDRVGQNATLYCDTCPCL------TCSVKIVQTG 271

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           I  VV        R+     + L   GI
Sbjct: 272 ISEVVYSQSY---RMDEESFKVLKNAGI 296


>gi|171384|gb|AAA34561.1| dCMP deaminase [Saccharomyces cerevisiae]
          Length = 312

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 54/148 (36%), Gaps = 41/148 (27%)

Query: 5   SFDARFMSAA-LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG---------GCP- 53
           S+D+ FM  A L  SR +         V C+IV++  VI  G              GCP 
Sbjct: 162 SWDSYFMKLATLAASRSNCMKR----RVGCVIVRECRVIATGYNGTPRHLTNCFNGGCPR 217

Query: 54  ---------------HAEVQALEEAGEEARG--ATAYVTLEPCSHYGRSPPCAQFIIECG 96
                          HAE  AL EAG +  G  AT Y    PC        C+  I++ G
Sbjct: 218 CNDGDSRNLHTCLCLHAEENALLEAGRDRVGQNATLYCDTCPCL------TCSVKIVQTG 271

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           I  VV        R+     + L   GI
Sbjct: 272 ISEVVYSQSY---RMDEESFKVLKNAGI 296


>gi|6321938|ref|NP_012014.1| Dcd1p [Saccharomyces cerevisiae S288c]
 gi|729306|sp|P06773|DCTD_YEAST RecName: Full=Deoxycytidylate deaminase; AltName: Full=dCMP
           deaminase
 gi|500658|gb|AAB68985.1| Dcd1p: dCMP deaminase [Saccharomyces cerevisiae]
 gi|151944091|gb|EDN62384.1| dCMP deaminase [Saccharomyces cerevisiae YJM789]
 gi|285810051|tpg|DAA06838.1| TPA: Dcd1p [Saccharomyces cerevisiae S288c]
          Length = 312

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 54/148 (36%), Gaps = 41/148 (27%)

Query: 5   SFDARFMSAA-LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG---------GCP- 53
           S+D+ FM  A L  SR +         V C+IV++  VI  G              GCP 
Sbjct: 162 SWDSYFMKLATLAASRSNCMKR----RVGCVIVRECRVIATGYNGTPRHLTNCFNGGCPR 217

Query: 54  ---------------HAEVQALEEAGEEARG--ATAYVTLEPCSHYGRSPPCAQFIIECG 96
                          HAE  AL EAG +  G  AT Y    PC        C+  I++ G
Sbjct: 218 CNDGDSRNLHTCLCLHAEENALLEAGRDRVGQNATLYCDTCPCL------TCSVKIVQTG 271

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           I  VV        R+     + L   GI
Sbjct: 272 ISEVVYSQSY---RMDEESFKVLKNAGI 296


>gi|288925498|ref|ZP_06419431.1| guanine deaminase [Prevotella buccae D17]
 gi|315606630|ref|ZP_07881641.1| guanine deaminase [Prevotella buccae ATCC 33574]
 gi|288337714|gb|EFC76067.1| guanine deaminase [Prevotella buccae D17]
 gi|315251640|gb|EFU31618.1| guanine deaminase [Prevotella buccae ATCC 33574]
          Length = 155

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 17/108 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE- 65
           M  A+  S   V           +I ++G ++     +    +    HAEV A+ +A   
Sbjct: 7   MRRAIVLSEESVKHGGG--PFGAVIARNGEIVAEASNSVTIDHDPTAHAEVNAIRKATSK 64

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
               +  G   Y + EPC      P C   I    + ++    D  D 
Sbjct: 65  LQNFDLEGCEIYTSCEPC------PMCLGAIYWAHLDKIYYANDRKDA 106


>gi|125975082|ref|YP_001038992.1| CMP/dCMP deaminase, zinc-binding [Clostridium thermocellum ATCC
           27405]
 gi|281418500|ref|ZP_06249519.1| CMP/dCMP deaminase zinc-binding [Clostridium thermocellum JW20]
 gi|125715307|gb|ABN53799.1| CMP/dCMP deaminase, zinc-binding protein [Clostridium thermocellum
           ATCC 27405]
 gi|281407584|gb|EFB37843.1| CMP/dCMP deaminase zinc-binding [Clostridium thermocellum JW20]
 gi|316939247|gb|ADU73281.1| CMP/dCMP deaminase zinc-binding protein [Clostridium thermocellum
           DSM 1313]
          Length = 153

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 52/150 (34%), Gaps = 43/150 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D  FM   +   +     T     V  LIVKD  ++  G                   
Sbjct: 4   SWDEYFMEI-VELIK--TRSTCLRRQVGALIVKDKRILATGYNGAPMGCKHCSEIGCLRE 60

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G    G T YVT +PC        CA+  I 
Sbjct: 61  KLNVPSGQRHELCRAIHAEQNAIVQAAYSGTSVNGGTLYVTTQPCI------LCAKMAIN 114

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            GI+++V   D PD       ++ L + GI
Sbjct: 115 AGIKKIVFKGDYPD----ELSMEMLKEAGI 140


>gi|284036841|ref|YP_003386771.1| CMP/dCMP deaminase zinc-binding protein [Spirosoma linguale DSM 74]
 gi|283816134|gb|ADB37972.1| CMP/dCMP deaminase zinc-binding protein [Spirosoma linguale DSM 74]
          Length = 186

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 56/152 (36%), Gaps = 38/152 (25%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
           FD  FM  A+  ++    + +    V  ++ +D  +I  G                    
Sbjct: 24  FDDIFMDLAVNLAKRSHCIKA---QVGAVLTRDTRIISIGYNGPPAGTHNCDEEFPGVGC 80

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE  A+  A   G E  G+T YVTL PC        CA+ I    I 
Sbjct: 81  PRDSKGSCSLALHAEQNAILYAAKNGSEIEGSTIYVTLSPCI------ACARIIYSMKIA 134

Query: 99  RVVVCVDDPDVRV--SGRGLQWLSQKGIIVDR 128
           RVV      + +   S  G+ +L + G+ V+R
Sbjct: 135 RVVFLNSYAEYKGIPSDEGVDFLRRFGVTVER 166


>gi|162451647|ref|YP_001614014.1| cytidine/deoxycytidylate deaminase [Sorangium cellulosum 'So ce
           56']
 gi|161162229|emb|CAN93534.1| Cytidine/deoxycytidylate deaminase [Sorangium cellulosum 'So ce
           56']
          Length = 151

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 44/123 (35%), Gaps = 17/123 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG----CPHAEVQA 59
           S D   M  AL  +R      +  P    L+   DG V+               HAEV A
Sbjct: 2   SRDEALMGRALELARGAQ--RAGEPPFGALVAAPDGAVVAEATDEVNAQRDFTWHAEVGA 59

Query: 60  LEEA----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           +  A    G + +G T Y T+EPC      P C        I R+V      +V  +  G
Sbjct: 60  VRRACAAVGPDLQGYTLYTTVEPC------PMCFTAAWLARISRIVYGCTMREVTEATGG 113

Query: 116 LQW 118
            Q 
Sbjct: 114 AQR 116


>gi|255715725|ref|XP_002554144.1| KLTH0E15290p [Lachancea thermotolerans]
 gi|238935526|emb|CAR23707.1| KLTH0E15290p [Lachancea thermotolerans]
          Length = 152

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 19/156 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCPHAEV 57
           +S +D   M  A + +   +      P   CLI  +DG V+G G            H E+
Sbjct: 1   MSKWDGLGMEIAYKEAAKGM-EEGGVPIGGCLIDNRDGTVVGSGHNMRFQKGSATLHGEI 59

Query: 58  QAL----EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
             L       G   +  T Y TL PC        C   I+  GI R VV     +V   G
Sbjct: 60  STLENCGRMKGSVYKNCTLYTTLSPCDM------CTGAILLYGIPRCVVG---ENVNFKG 110

Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            G ++L+++G  V  + + + K  +  ++  + +  
Sbjct: 111 DGERYLAERGCEVRVVDDEKCKKIMKQFIDERPQDW 146


>gi|258517370|ref|YP_003193592.1| CMP/dCMP deaminase zinc-binding [Desulfotomaculum acetoxidans DSM
           771]
 gi|257781075|gb|ACV64969.1| CMP/dCMP deaminase zinc-binding [Desulfotomaculum acetoxidans DSM
           771]
          Length = 160

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 52/147 (35%), Gaps = 22/147 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA-- 63
           FM  AL  +     L    P +  + V    VIGRG            HAE+ AL EA  
Sbjct: 5   FMRIALEEANKA-YLKGEVP-IGAVAVLGRQVIGRGHNLRESLNDSTAHAEMLALREAAR 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                       Y T+EPC+       C+  +++  ++ +V    D        GL  + 
Sbjct: 63  FIGDWRLNEVILYSTIEPCAM------CSGALVQFRVKLLVYGAPDVKFGAVDSGLDIVR 116

Query: 121 QKGI-----IVDRMMESEGKIFLHAYL 142
           Q        +V  ++  E +  +  + 
Sbjct: 117 QARFNHRVEVVSGVLADECREIMQRFF 143


>gi|296157007|ref|ZP_06839844.1| bifunctional deaminase-reductase domain protein [Burkholderia sp.
           Ch1-1]
 gi|295892893|gb|EFG72674.1| bifunctional deaminase-reductase domain protein [Burkholderia sp.
           Ch1-1]
          Length = 225

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 7/113 (6%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVI-IVTENDDPVLALAFRKKNINIIYCD--CRDLKKL 278
           I +DP  +++  S    TAL + VI ++TE          +   ++ ++      DL K+
Sbjct: 84  ISIDPQGRVAWKSN---TALKSHVIEVLTEQVADDYLAYLQSIGVSYVFGGKTGIDLDKV 140

Query: 279 LTILV-GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           +  L    GV  L+VEGG+ V+ +F+N+ LVD + +    +V G    PS  E
Sbjct: 141 VQTLARELGVKKLIVEGGSHVSGAFVNAGLVDEVSVLILPLVDGRSAHPSSFE 193


>gi|295102170|emb|CBK99715.1| Deoxycytidylate deaminase [Faecalibacterium prausnitzii L2-6]
          Length = 159

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 50/145 (34%), Gaps = 34/145 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-------------TAYG 50
           ++D  FM  AL  +         +  V   IV  +  ++  G                  
Sbjct: 8   NWDEYFMGIALLTAMRSK---DPSSQVGACIVSPENKILSLGYNGMPIGCDDDAMPWERE 64

Query: 51  GCP---------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           G P         HAE+ A L  A    +GA  YVTL PC+       C + II+ GI  V
Sbjct: 65  GEPLNTKYMYVCHAELNAILNSAHNNLKGARVYVTLFPCNE------CTKAIIQSGIAEV 118

Query: 101 VVCVD-DPDVRVSGRGLQWLSQKGI 124
           V   D   D   S        + G+
Sbjct: 119 VYYSDKYHDTDSSVAARFMFQKAGV 143


>gi|317051257|ref|YP_004112373.1| CMP/dCMP deaminase zinc-binding protein [Desulfurispirillum indicum
           S5]
 gi|316946341|gb|ADU65817.1| CMP/dCMP deaminase zinc-binding protein [Desulfurispirillum indicum
           S5]
          Length = 157

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 17/113 (15%)

Query: 7   DAR-FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
           D R +M  A+  +R ++      P    +IV++G V+GRG            HAE+ A+ 
Sbjct: 3   DHRVYMEQAIAMARQNIDSGDGGP-FGAVIVREGQVVGRGRNGVTSSLDPTAHAEIVAIR 61

Query: 62  EAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           +A    +         Y + EPC      P C   I    +R +    +  D 
Sbjct: 62  DACANLKTFHLEDCDIYTSCEPC------PMCLGAIYWARLRAIYYAANRQDA 108


>gi|194017722|ref|ZP_03056332.1| ComE operon protein 2 [Bacillus pumilus ATCC 7061]
 gi|194010622|gb|EDW20194.1| ComE operon protein 2 [Bacillus pumilus ATCC 7061]
          Length = 189

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 55/162 (33%), Gaps = 34/162 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
           M   S++  FM+ +   +      T    +V   IV+D  +I  G               
Sbjct: 1   MERISWNQYFMAQSHLLALRS---TCERLAVGATIVRDKRIIAGGYNGSIAGDVHCADVG 57

Query: 47  -----TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A+ +    G     A  YVT  PC        C + II+ GIR
Sbjct: 58  CYVIDHHCVRTIHAEMNAILQCAKFGAPTADAEIYVTHFPCLQ------CCKAIIQAGIR 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
            V    D  +   +   +    Q G+  +++   E  I L  
Sbjct: 112 TVYYAKDYKNHPYA---IDLFEQAGVQTEQVELDEMIIDLKN 150


>gi|23016531|ref|ZP_00056286.1| COG0590: Cytosine/adenosine deaminases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 145

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 37/101 (36%), Gaps = 14/101 (13%)

Query: 30  SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG----EEARGATAYVTLEPCSH 81
            V  ++V+DG +I R             HAE+ A+  A     +       YVTLEPC  
Sbjct: 22  PVGAVVVQDGRIIARAGNRVEELGDPTAHAEMLAIRAATVLGDKRLEDCDLYVTLEPC-- 79

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
               P CA  I    IRR+     DP       G +     
Sbjct: 80  ----PMCAAAISLARIRRLYFGAYDPKSGGVEHGSKVFDHA 116


>gi|320590398|gb|EFX02841.1| cytidine and deoxycytidylate deaminase [Grosmannia clavigera
           kw1407]
          Length = 173

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 58/158 (36%), Gaps = 27/158 (17%)

Query: 2   PVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVT-AYGGCPHAEV 57
           P++  D   +M  AL  +       S N  V  ++V    G ++  G T    G  HAE 
Sbjct: 3   PIAPADHPAYMRHALSLAEKSPPRPS-NFRVGAVLVDAASGRILADGFTLELHGNTHAEQ 61

Query: 58  QAL----EEAGEEARGATA------------YVTLEPCSHY--GRSPPCAQFIIECGIRR 99
                   + G      +A            Y T+EPCS    G  P  A+ +   G +R
Sbjct: 62  CCFMKLAAQHGVAEEDLSALPLTALPAQLALYTTMEPCSLRLSGNDPCVARVLRLAGHQR 121

Query: 100 ---VVVCVDDPDVRVSGRGLQ-WLSQKGIIVDRMMESE 133
              V V V +PD  V+    +  L   GI V  +   E
Sbjct: 122 SVTVYVGVTEPDKFVAQNTGRSTLEAAGIHVVHVPGLE 159


>gi|326536349|ref|YP_004300790.1| Cd dCMP deaminase [Acinetobacter phage 133]
 gi|299483430|gb|ADJ19524.1| Cd dCMP deaminase [Acinetobacter phage 133]
          Length = 185

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 60/179 (33%), Gaps = 60/179 (33%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP--------------- 53
           FM  A   S+    ++     V  +I K+G +I  G      G                 
Sbjct: 6   FMQIAYLVSQESKCVSWK---VGAVIAKNGRIISTGYNGSPAGGVNCCDHASEQNWTTGQ 62

Query: 54  ------------------------------HAEVQALEEA---GEEARGATAYVTLEPCS 80
                                         HAE+ A+  A   G    GAT YVTL PC+
Sbjct: 63  YDPAPPHINRVTLKTECRDLHSKWSAHNEIHAELNAILYAARNGTAIEGATLYVTLSPCA 122

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
                  CA+ I + GI+++V        R++    + L++ GI V ++ + +      
Sbjct: 123 D------CAKAIAQSGIKQLVYSETYD--RITPGWEKILTEAGIEVHQIGKQKLHQLNW 173


>gi|319652245|ref|ZP_08006363.1| hypothetical protein HMPREF1013_02976 [Bacillus sp. 2_A_57_CT2]
 gi|317396068|gb|EFV76788.1| hypothetical protein HMPREF1013_02976 [Bacillus sp. 2_A_57_CT2]
          Length = 150

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 43/119 (36%), Gaps = 27/119 (22%)

Query: 9   RFMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGV------TAYGGCPHAEVQA 59
            FM  A+  +       G          ++VK+  +I  GV          G  HAE+ A
Sbjct: 3   HFMKRAIELAINNVKDGGQ-----PFGAVLVKEQDIIAEGVNELHKKHDVSG--HAELLA 55

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           +  A E     +  G T Y + EPC      P C   +   GI +V  C    D   +G
Sbjct: 56  IRRAQEQFQTNDLAGFTMYASGEPC------PLCLTAMYFAGIDKVYYCQSVDDAFHAG 108


>gi|163853666|ref|YP_001641709.1| deaminase-reductase domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163665271|gb|ABY32638.1| bifunctional deaminase-reductase domain protein [Methylobacterium
           extorquens PA1]
          Length = 238

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTE---NDDPVLALAFRKKNINIIYCDCRDLKKL 278
           + LD    +   ++         VI++T    +DD +  L    ++  I      D    
Sbjct: 90  VALDARGAMDWGAR--NDIEGDHVIVLTTGQASDDRLRRLKAGGQSYIIAGEHEVDFALA 147

Query: 279 LTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
           L  L    G+  LLVEGG  +  S + +RLVD + L  +  V G  G P+  +    E +
Sbjct: 148 LAKLKRLFGIERLLVEGGGRINGSMLKARLVDELSLLLAPAVDGVLGTPALFDFEGGEGD 207

Query: 338 FMCVRRD 344
            M  RR 
Sbjct: 208 SMGSRRR 214


>gi|323342858|ref|ZP_08083090.1| competence protein comEB [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463970|gb|EFY09164.1| competence protein comEB [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 159

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 52/144 (36%), Gaps = 33/144 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGV----------------- 46
           S+D  FM  A   +         +  V   IV     ++G G                  
Sbjct: 9   SWDEYFMGLAHLSALRSK---DPSTQVGAAIVDQQKKIVGIGYNGLPTGLSDDAFPWERE 65

Query: 47  -----TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                T Y    HAE+ A+  A +  +G T YV+L PC+       C++ II+ GI+ +V
Sbjct: 66  GDFQTTKYAYVVHAELNAILNATQSLQGCTIYVSLFPCNE------CSKAIIQSGIKEIV 119

Query: 102 VCVDDP-DVRVSGRGLQWLSQKGI 124
              D   +        + L   G+
Sbjct: 120 YEDDKYAETDAVLVSKRMLDAAGV 143


>gi|52140651|ref|YP_086177.1| cytidine/deoxycytidylate deaminase family protein; guanine
           deaminase [Bacillus cereus E33L]
 gi|51974120|gb|AAU15670.1| cytidine/deoxycytidylate deaminase family protein; probable guanine
           deaminase [Bacillus cereus E33L]
          Length = 153

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 16/104 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
             FM  A+  +  +       P    ++VKDG ++ +GV    T +    HAE+  + EA
Sbjct: 4   KEFMKLAIDLAYNNTKNEKGKP-FGAVLVKDGEIVAKGVNEVLTTHDPTAHAELLTIREA 62

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                  +      Y + EPC      P C   I    ++ V  
Sbjct: 63  CRILSTSDLSDCILYASGEPC------PMCLSAIYWANLKHVYY 100


>gi|302307191|ref|NP_983768.2| ADL328Cp [Ashbya gossypii ATCC 10895]
 gi|299788881|gb|AAS51592.2| ADL328Cp [Ashbya gossypii ATCC 10895]
          Length = 151

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 20/156 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG----GCPHAEV 57
           ++ +D + M  A + +          P   CLI + DG V+GRG            H E 
Sbjct: 1   MAQWDRKGMEIAYQEALQGYAEGGV-PIGGCLIDQTDGTVLGRGRNMRFQRASATLHGET 59

Query: 58  QALEEAGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            ALE AG       +  T Y TL PC        CA  ++  GI R VV  +D  +    
Sbjct: 60  AALENAGRLPGHVYKHCTLYTTLSPCDM------CAGAVLLYGIPRCVVGENDTFLGAEA 113

Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
                L  +G+ V  + ++  +  +  ++  + +  
Sbjct: 114 H----LRARGVEVAVLQDARCRALMQQFVAARPQDW 145


>gi|131888897|ref|NP_001076566.1| tRNA-specific adenosine deaminase 2 [Danio rerio]
 gi|55962646|emb|CAI11650.1| novel protein [Danio rerio]
 gi|190337669|gb|AAI63783.1| Adenosine deaminase, tRNA-specific 2, TAD2 homolog (S. cerevisiae)
           [Danio rerio]
 gi|190340014|gb|AAI63804.1| Adenosine deaminase, tRNA-specific 2, TAD2 homolog (S. cerevisiae)
           [Danio rerio]
          Length = 206

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 59/189 (31%), Gaps = 27/189 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL----- 60
           +M+ A   +     L +    V CL+V +  +IG+G            HAE+ AL     
Sbjct: 24  WMAKAFDMA--VEALENGEVPVGCLMVYNNEIIGKGRNEVNETKNATRHAEMVALDQVLD 81

Query: 61  ------EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
                 ++  E       YVT+EPC        CA  +    I  VV    +      G 
Sbjct: 82  WCRLREKDCKEVCEQTVLYVTVEPCIM------CAAALRLLRIPFVVYGCKNERFGGCGS 135

Query: 115 GL----QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG 170
            L      L   G     +     +  +    T   ++  +   +    +   + +    
Sbjct: 136 VLDVSSDHLPHTGTSFKCIAGYRAEEAVEMLKTFYKQENPNGQCQTGGRKRRFLRLLLSD 195

Query: 171 SVPITGFIS 179
            + +    +
Sbjct: 196 CLRLGSPSA 204


>gi|294793764|ref|ZP_06758901.1| probable deoxycytidylate deaminase [Veillonella sp. 3_1_44]
 gi|294455334|gb|EFG23706.1| probable deoxycytidylate deaminase [Veillonella sp. 3_1_44]
          Length = 159

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 52/144 (36%), Gaps = 33/144 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT---------------- 47
           S++  FM  A+  ++        N  V   IV  D  ++  G                  
Sbjct: 9   SWNEYFMGVAILAAQRSK---DPNTQVGACIVSNDNKILSIGYNGMPLNCSDDDFTWERD 65

Query: 48  -----AYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                 Y    H+E+ A+    G    G+  YVTL PC+       CA+ II+ GI+ V+
Sbjct: 66  TADDNKYFYTVHSELNAILNYRGGSLEGSKIYVTLFPCNE------CAKAIIQSGIKAVI 119

Query: 102 VCVD-DPDVRVSGRGLQWLSQKGI 124
              D   D +      + L   G+
Sbjct: 120 YRDDLYKDTKEVKASKRMLKTAGV 143


>gi|26987771|ref|NP_743196.1| cumB protein [Pseudomonas putida KT2440]
 gi|24982465|gb|AAN66660.1|AE016294_2 cumB protein [Pseudomonas putida KT2440]
          Length = 145

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  ++V+ G VIG+G            HAE+ A+  A          G+T YVTLEPCS
Sbjct: 18  PVGAVLVQHGQVIGQGFNRPIIDSDPSAHAEMVAIRAAARSASNYRLPGSTLYVTLEPCS 77

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  CA  I+   + RVV    +P   +     Q     +L+ + ++   ++  E  
Sbjct: 78  M------CAGLIVHSRVMRVVFGALEPKAGIVQSQGQFFGQGFLNHRVMVEGGVLAQECG 131

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 132 QILSDFF 138


>gi|19705207|ref|NP_602702.1| deoxycytidylate deaminase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|296329061|ref|ZP_06871566.1| deoxycytidylate deaminase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|19713154|gb|AAL94001.1| Deoxycytidylate deaminase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|296153780|gb|EFG94593.1| deoxycytidylate deaminase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 174

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 51/148 (34%), Gaps = 33/148 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-------------TAYG 50
           ++D+ FM  A+  S         N  V   IV  D  ++G G                  
Sbjct: 20  NWDSYFMGIAILSSMRSK---DPNTQVGACIVNEDKRIVGVGYNGLPKGCDDKEFPWQRD 76

Query: 51  GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           G           HAE+ A+  + +  +    YV L PC        C + II+ GI+ +V
Sbjct: 77  GEFLNTKYPYVCHAELNAILNSIKSLKDCIIYVALFPCHE------CTKAIIQSGIKEIV 130

Query: 102 VCVDDP-DVRVSGRGLQWLSQKGIIVDR 128
              D   D   +    + L   G+   R
Sbjct: 131 YLSDKYTDTDSNRASKKMLDSAGVKYRR 158


>gi|284163518|ref|YP_003401797.1| bifunctional deaminase-reductase domain protein [Haloterrigena
           turkmenica DSM 5511]
 gi|284013173|gb|ADB59124.1| bifunctional deaminase-reductase domain protein [Haloterrigena
           turkmenica DSM 5511]
          Length = 184

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 9/83 (10%)

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
              P  +VT  D     L     ++ ++  + R+L   L     R    + + GGAA+A 
Sbjct: 72  GERPTFVVTSRD-----LPLATAHVELVAGNLRELVDGLEERYDR----IWLVGGAALAQ 122

Query: 301 SFINSRLVDSIILYRSQIVIGEG 323
           SF+   LVD I L    +++G G
Sbjct: 123 SFLREGLVDEIRLTVVPVLLGGG 145


>gi|296112127|ref|YP_003622509.1| hypothetical protein LKI_10005 [Leuconostoc kimchii IMSNU 11154]
 gi|295833659|gb|ADG41540.1| hypothetical protein LKI_10005 [Leuconostoc kimchii IMSNU 11154]
          Length = 82

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 23 GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
            T  NP V  +IV++  +I  G     G  HAE+ A     ++
Sbjct: 20 YKTFDNPRVGAIIVQNNQIIATGHHEAFGQAHAEINAFNHLKDK 63


>gi|83591205|ref|YP_431214.1| CMP/dCMP deaminase, zinc-binding [Moorella thermoacetica ATCC
           39073]
 gi|83574119|gb|ABC20671.1| CMP/dCMP deaminase, zinc-binding protein [Moorella thermoacetica
           ATCC 39073]
          Length = 135

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 54/145 (37%), Gaps = 35/145 (24%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            +D  F+  A + +           +V  ++VKD  + G G                   
Sbjct: 4   EWDEYFLDIAFQVASRSTCNRL---AVGAVVVKDKRIKGTGYNGAPHGLPHCLEVGCLME 60

Query: 54  --------HAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                   HAE+ AL E   EE +GAT YVT  PC        CA  I++ GI+R+V   
Sbjct: 61  GEHCLRTIHAEINALLECSPEERQGATMYVTDYPC------ERCALVIVQSGIKRLVYA- 113

Query: 105 DDPDVRVSGRGLQWLSQKGIIVDRM 129
                R       WL + GI +  +
Sbjct: 114 -----RPYHVNHDWLLEAGIEIVHL 133


>gi|298207416|ref|YP_003715595.1| putative cytosine/adenosine deaminase [Croceibacter atlanticus
           HTCC2559]
 gi|83850052|gb|EAP87920.1| putative cytosine/adenosine deaminase [Croceibacter atlanticus
           HTCC2559]
          Length = 149

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 54/155 (34%), Gaps = 17/155 (10%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           M     D  FM  AL  +          P V  ++V +  +I R             HAE
Sbjct: 1   MLQPFDDTYFMKKALLEAEEA-YEKGEIP-VGAIVVANNTIIARSHNLTELLNDVTAHAE 58

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +Q +  A     G+     T YVTLEPC        CA  +    I ++V   +D     
Sbjct: 59  MQVITSAANHIGGKYLTDCTLYVTLEPC------QMCAGALYWSQISKIVFGAEDTQRGY 112

Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQV 146
              G +   +  ++   + E    +    ++ R+ 
Sbjct: 113 RVMGTKLHPKTKVVSGVLAEDASLLLKRFFIERRN 147


>gi|325678499|ref|ZP_08158114.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Ruminococcus albus 8]
 gi|324109810|gb|EGC04011.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Ruminococcus albus 8]
          Length = 248

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 56/171 (32%), Gaps = 33/171 (19%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCP------ 53
           M   S+D  F+  A   S         N  V   IV +   ++  G              
Sbjct: 5   MNYISWDDYFLGIA-ELS--AARSKDPNTQVGACIVSEENKILSLGYNGMPAGCNDDEMP 61

Query: 54  ----------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                           HAE+ A+  +  + +G+  YV+L PC+       CA+ II+ GI
Sbjct: 62  WGREGDFLDTKYPFVCHAELNAVLNSNHDLKGSRIYVSLFPCNE------CAKAIIQSGI 115

Query: 98  RRVVVCVDDP-DVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVE 147
           + V+   D   D   +          G+   ++ +      L     ++  
Sbjct: 116 KEVIYTCDKYADTDGTKASKMMFKMAGVKTRQIKQEHLVKILPNIKPKRWF 166


>gi|323306816|gb|EGA60101.1| Fcy1p [Saccharomyces cerevisiae FostersO]
          Length = 158

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 55/155 (35%), Gaps = 19/155 (12%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCPHAEVQ 58
           S +D + M  A   +          P   CLI  KDG V+GRG            H E+ 
Sbjct: 8   SKWDQKGMDIAYEEAALG-YKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEIS 66

Query: 59  ALEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
            LE  G       +  T Y TL PC        C   II  GI R VV  +        +
Sbjct: 67  TLENCGRLEGKVYKDTTLYTTLSPCDM------CTGAIIMYGIPRCVVGENXNFKSKGEK 120

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
              +L  +G  V  + +   K  +  ++  + +  
Sbjct: 121 ---YLQTRGHEVVVVDDERCKKIMKQFIDERPQDW 152


>gi|307102708|gb|EFN50977.1| hypothetical protein CHLNCDRAFT_33285 [Chlorella variabilis]
          Length = 167

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 39/118 (33%), Gaps = 17/118 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAY----GGCPHAEVQALE 61
             +M  A+  S        T      LIV    G V+G G            H E++A+ 
Sbjct: 8   ETYMKRAIELSAKAGLEEQTGGCFGALIVDKETGEVVGEGYNKVILNNDPTWHGEMEAIR 67

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           EA          G   Y + +PC      P C   I+   +  V       DV  +G+
Sbjct: 68  EACKARGSPHIPGTVCYTSAQPC------PMCYTAIMWARVDHVYYGATYEDVMENGK 119


>gi|288929191|ref|ZP_06423036.1| guanine deaminase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329293|gb|EFC67879.1| guanine deaminase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 155

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 33/111 (29%), Gaps = 17/111 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
              M  A+  S   V           +I + G +I          +    HAEV A+  A
Sbjct: 4   EELMRRAIALSEESVKNGGG--PFGAVIARKGEIIAEAANRVTLDHDPTAHAEVSAIRLA 61

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
             +       G   Y + EPC      P C   I    +  V    +  D 
Sbjct: 62  SSKLGTFNLSGCDIYTSCEPC------PMCLGAIYWARLDNVYYANNREDA 106


>gi|58039265|ref|YP_191229.1| cytosine deaminase [Gluconobacter oxydans 621H]
 gi|58001679|gb|AAW60573.1| Cytosine deaminase [Gluconobacter oxydans 621H]
          Length = 168

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 55/151 (36%), Gaps = 27/151 (17%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIG------RGVTAYGGCPHAEVQALEEA 63
           M  AL+ +R     +     V  +++  DG V+        G        HAE+ A+ EA
Sbjct: 16  MQIALQAAREAA--SCGEVPVGAVVLAPDGNVLAVARNHVEGAHD--ASAHAELLAMREA 71

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
               +       T  VTLEPCS       CA  I+   I RVV    DP       G + 
Sbjct: 72  ATRLKSPRLTDCTLVVTLEPCSM------CAAAIVHFRIGRVVFGAYDPKGGGVEHGPRI 125

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTR 144
                   +  ++  + E E    L A+  +
Sbjct: 126 FERPSCLHRPEVIGGVCEREASEMLKAFFRK 156


>gi|298249131|ref|ZP_06972935.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
           racemifer DSM 44963]
 gi|297547135|gb|EFH81002.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
           racemifer DSM 44963]
          Length = 197

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 69/213 (32%), Gaps = 20/213 (9%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH--LLRAQSDAILVGIGTVLADDPE 206
              + L++ +S D  +     G   +      +      LRA    ++  I      D  
Sbjct: 1   MRKLLLQMQMSMDGYVADRDGGMDWMVWSYDSDWTWDTKLRAYHTDLMTSI------DCI 54

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
           L  R   +Q        L         S   +    A  ++ +        +     N  
Sbjct: 55  LLSRKMAVQGFHAHWAALAQKPDNP-QSHFAENLTKAEKVVFS-----KTLVRSTWDNAF 108

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
               +  D    L  + G+ + +    GGA  A S I + LVD   L  + +V+G G   
Sbjct: 109 FAKGNLVDEVLALKRVSGKNIIAF---GGAGFASSLIQAGLVDEFHLIINPVVLGAG--L 163

Query: 327 SPLEEGYLEKNFMCVRRDYFGSD-VCLEYIGKN 358
           SP +E     N   +    +  D V LEY  K 
Sbjct: 164 SPFKEISSPLNLHLIEAIPYAHDIVVLEYSKKE 196


>gi|38232870|ref|NP_938637.1| putative cytosine deaminase [Corynebacterium diphtheriae NCTC
           13129]
 gi|38199128|emb|CAE48752.1| Putative cytosine deaminase [Corynebacterium diphtheriae]
          Length = 147

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 54/150 (36%), Gaps = 27/150 (18%)

Query: 10  FMSAALRFSRWHVGLTST-NPSVACLIV-KDGIVIGRGV----TAYGGCPHAEVQALEEA 63
            M  A+  +      T   +  V  +I   DG ++GRG     T +    HAE+ A+ +A
Sbjct: 1   MMREAITLAH----TTPPADIPVGAIIYGPDGTILGRGTNRRETDHNPLGHAEIMAITQA 56

Query: 64  ------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
                 G      T  VTLEPC        CA  ++   I  ++    +P     G    
Sbjct: 57  CTQRGDGWRLTDCTLAVTLEPC------TMCAGALVGSRIGHIIFGAYEPKTGACGSAFD 110

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYL 142
            +    +     +   ++E+E    +  + 
Sbjct: 111 VVRDPAVLHTVQVRGGILEAECAELMTNFF 140


>gi|157693059|ref|YP_001487521.1| dCMP deaminase [Bacillus pumilus SAFR-032]
 gi|157681817|gb|ABV62961.1| dCMP deaminase [Bacillus pumilus SAFR-032]
          Length = 189

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 55/162 (33%), Gaps = 34/162 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
           M   S++  FM+ +   +      T    +V   IV+D  +I  G               
Sbjct: 1   MERISWNQYFMAQSHLLALRS---TCERLAVGATIVRDKRIIAGGYNGSIAGDVHCADVG 57

Query: 47  -----TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A+ +    G     A  YVT  PC        C + II+ GIR
Sbjct: 58  CYVIDHHCVRTIHAEMNAILQCAKFGAPTADAEIYVTHFPCLQ------CCKAIIQAGIR 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
            V    D  +   +   +    Q G+  +++   E  I L  
Sbjct: 112 TVYYAKDYKNHPYA---IDLFEQAGVQTEQVELDEMIIDLKN 150


>gi|300725950|ref|ZP_07059412.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
           bryantii B14]
 gi|299776801|gb|EFI73349.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
           bryantii B14]
          Length = 144

 Score = 63.0 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 55/150 (36%), Gaps = 38/150 (25%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
            D R++  A  ++            V  L+VKD ++I  G     G P            
Sbjct: 10  LDLRYLRMARIWAENSYCKRRK---VGALVVKDKMIISDGY---NGTPSGFENICEDDND 63

Query: 54  -------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A   L  +   + G+T YVT  PC        CA+ II+ GI+RVV  
Sbjct: 64  VTKPYVLHAEANAITKLARSSNNSDGSTLYVTASPCIE------CAKLIIQAGIKRVVYA 117

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
                      G+  L +  I V+ +   +
Sbjct: 118 EKYRL----EDGINLLKRAKIEVEYLNPDD 143


>gi|281357825|ref|ZP_06244311.1| dCMP deaminase [Victivallis vadensis ATCC BAA-548]
 gi|281315772|gb|EFA99799.1| dCMP deaminase [Victivallis vadensis ATCC BAA-548]
          Length = 159

 Score = 63.0 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 61/168 (36%), Gaps = 48/168 (28%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPS---VACLIVKDGIVIGRGVTAYG-------- 50
           P  S+D  FM  A      HV  T +N S   VA ++V+D  +I  G             
Sbjct: 7   PRPSWDQYFMDIA------HVAATRSNCSRRQVAAVLVRDCRIISTGYNGTPRGVRNCSD 60

Query: 51  -GCP------------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPC 88
            GCP                  HAE  A+ +A   G   +GAT Y T  PC        C
Sbjct: 61  GGCPRCNSDAPSGTNLHQCVCSHAEENAIVQAAYHGIAVKGATLYTTFSPCL------LC 114

Query: 89  AQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI 136
           A+ II  GI  VV         +    +  L + G+IV  + +     
Sbjct: 115 AKMIINAGIVEVVY---HQHYSIDDVSMGLLHEAGVIVRPLEKEMKHE 159


>gi|147679158|ref|YP_001213373.1| deoxycytidylate deaminase [Pelotomaculum thermopropionicum SI]
 gi|146275255|dbj|BAF61004.1| deoxycytidylate deaminase [Pelotomaculum thermopropionicum SI]
          Length = 165

 Score = 63.0 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 53/150 (35%), Gaps = 43/150 (28%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------- 46
           +D  FM  A   +R    L      V  +IVK+  ++  G                    
Sbjct: 21  WDEYFMDIAEVVARRSTCLRR---QVGAVIVKERRILASGYNGAPAGLKHCLETGCLREQ 77

Query: 47  --------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                          HAE  AL +A   G   +GA  YVT +PC        CA+ +I  
Sbjct: 78  KKVPPGERHELCRGLHAEQNALIQAAVYGTAIQGAVCYVTHQPC------VLCAKILINA 131

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           GI++VV   + PD       L+   + G+ 
Sbjct: 132 GIKKVVFQGEYPDSMA----LEMFEEAGVE 157


>gi|167753214|ref|ZP_02425341.1| hypothetical protein ALIPUT_01485 [Alistipes putredinis DSM 17216]
 gi|167659145|gb|EDS03275.1| hypothetical protein ALIPUT_01485 [Alistipes putredinis DSM 17216]
          Length = 144

 Score = 63.0 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 56/143 (39%), Gaps = 32/143 (22%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC------------- 52
            D R++  A  ++     +      V  LIVKD ++I  G                    
Sbjct: 11  LDMRYLRMARIWAENSYCVRRK---VGALIVKDKMIISDGYNGTPAGFENICEDETGKTK 67

Query: 53  ---PHAEVQALEEAGEEAR---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               HAE  A+ +  + A    G+T Y+T  PC        C++ II+ GIRRVV   D 
Sbjct: 68  SYVLHAEANAITKVAKSANNCDGSTLYITAAPCIE------CSKLIIQAGIRRVVYSDDY 121

Query: 107 PDVRVSGRGLQWLSQKGIIVDRM 129
                S  GL  L + GI   ++
Sbjct: 122 R----SEEGLDLLRRVGIECVQI 140


>gi|283781867|ref|YP_003372622.1| CMP/dCMP deaminase zinc-binding protein [Pirellula staleyi DSM
           6068]
 gi|283440320|gb|ADB18762.1| CMP/dCMP deaminase zinc-binding protein [Pirellula staleyi DSM
           6068]
          Length = 157

 Score = 63.0 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 38/109 (34%), Gaps = 19/109 (17%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYG--GCPHAEVQA 59
           S+ D  +M AA+  +R              +IV    G +I  G          H E+ A
Sbjct: 10  SALDESYMRAAIELARHV-----PQLPFGAVIVDRSSGKIIAGGFNQSAMNPTWHGEIVA 64

Query: 60  ---LEEAGEEARGA-TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
              L + G   R +   Y T EPC      P C   I+   I  ++   
Sbjct: 65  LNDLAQRGLHDRPSLALYTTAEPC------PMCMGAILWSQIEELIYGT 107


>gi|262197671|ref|YP_003268880.1| CMP/dCMP deaminase zinc-binding protein [Haliangium ochraceum DSM
           14365]
 gi|262081018|gb|ACY16987.1| CMP/dCMP deaminase zinc-binding protein [Haliangium ochraceum DSM
           14365]
          Length = 153

 Score = 63.0 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 47/132 (35%), Gaps = 31/132 (23%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------T 47
           P +S+D  FMS AL  +            V  +IV+D  ++  G                
Sbjct: 8   PRASWDEYFMSIALVVATRSTCHRK---YVGAVIVRDRTILSTGYNGSIRGMPHCTDVGH 64

Query: 48  AYGGCP-----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
              G       HAEV A+ +A   G     AT YVT  PC +      C +     GI R
Sbjct: 65  MMEGGHCVATIHAEVNAIIQAAKNGVVIDKATLYVTASPCWN------CFKQAANAGIER 118

Query: 100 VVVCVDDPDVRV 111
           +       D R+
Sbjct: 119 ICYAEFYRDERI 130


>gi|152976756|ref|YP_001376273.1| ComE operon protein 2 [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025508|gb|ABS23278.1| ComE operon protein 2 [Bacillus cytotoxicus NVH 391-98]
          Length = 185

 Score = 63.0 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 56/166 (33%), Gaps = 34/166 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M   S+D  FM+ +   S      T T  +V   IV+D  +I  G      GG       
Sbjct: 1   MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +  GA  YVT  PC        C + II+ GI 
Sbjct: 58  CYVIDNHCVRTIHAEMNALLQCAKFGVKTEGAEIYVTHFPCLQ------CCKAIIQSGIT 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            V    D  +   +   ++   Q  + V  +        L      
Sbjct: 112 AVYYAQDYKNHPYA---IELFKQANVTVKHVPLEYDIASLEQQERH 154


>gi|269793169|ref|YP_003318073.1| CMP/dCMP deaminase zinc-binding protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100804|gb|ACZ19791.1| CMP/dCMP deaminase zinc-binding protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 159

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 50/153 (32%), Gaps = 43/153 (28%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------- 46
           P  S+D  F+  A + +     L     +V  ++V+D  ++  G                
Sbjct: 11  PRPSWDVYFLKIAEQVATRSTCLRR---AVGAVLVRDQYIVSTGYNGAPRGTTHCLDLGC 67

Query: 47  ------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQF 91
                              H E+ A+ +A   G    G T Y T EPCS       C + 
Sbjct: 68  LREQLGVPSGQRHEICRGSHGEINAICQAAAMGVSTAGCTLYCTHEPCSF------CTKA 121

Query: 92  IIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +I  GIR VV     PD            + GI
Sbjct: 122 LIGAGIREVVFIHPYPDDLAR----ALRREAGI 150


>gi|238917857|ref|YP_002931374.1| dCMP deaminase [Eubacterium eligens ATCC 27750]
 gi|238873217|gb|ACR72927.1| dCMP deaminase [Eubacterium eligens ATCC 27750]
          Length = 159

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 51/145 (35%), Gaps = 32/145 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA-------------YG 50
           S+D  FM  A   S   +     N  V   IV +D  ++  G                  
Sbjct: 10  SWDEYFMGIA-TLS--GMRSKDPNTQVGACIVSQDNKILSMGYNGLPRGCSDDEFPWNRD 66

Query: 51  G-------CPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           G         H+E+ A+    G     A  YVTL PC+       CA+ II+ GI+ VV 
Sbjct: 67  GEDNKYFYTTHSELNAILNYRGGSLDNAKLYVTLFPCNE------CAKAIIQAGIKTVVY 120

Query: 103 CVDDP-DVRVSGRGLQWLSQKGIIV 126
             D   D        + L+  G+  
Sbjct: 121 DCDKYADTASVIASKRMLNAAGVRY 145


>gi|197124086|ref|YP_002136037.1| CMP/dCMP deaminase zinc-binding [Anaeromyxobacter sp. K]
 gi|196173935|gb|ACG74908.1| CMP/dCMP deaminase zinc-binding [Anaeromyxobacter sp. K]
          Length = 183

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 48/120 (40%), Gaps = 18/120 (15%)

Query: 5   SFDAR-FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQA 59
             D R  M  AL  +R           V  + + +G V+GRG  A         HAE+ A
Sbjct: 23  PVDEREAMQEALGLAREAAAR--GEVPVGAVALFEGRVVGRGANAREAARDPTAHAELLA 80

Query: 60  LEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           ++EA          G T  VTLEPC+       CA  ++   I R+V    DP    +G 
Sbjct: 81  IQEAARTLGRWRLTGVTVVVTLEPCAM------CAGAMVLARIDRLVYGASDPKAGCTGS 134


>gi|302522550|ref|ZP_07274892.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Streptomyces
           sp. SPB78]
 gi|302431445|gb|EFL03261.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Streptomyces
           sp. SPB78]
          Length = 262

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 58/204 (28%), Gaps = 13/204 (6%)

Query: 167 AGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD--PELTCRLNG------LQEHS 218
               S  I+G        +LRA +D ++VG GT   +   P               Q  +
Sbjct: 56  HDGRSQGISGPGDMRVFGVLRALADVVVVGAGTARGERYRPAKAREAFEAARAERGQAPA 115

Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD---CRDL 275
               ++     L     +    ++  +++           A  K    ++        + 
Sbjct: 116 AAIAVVSASLDLDFTLPLFTEPVVPTLVLTGAEAPAERVAAASKAGAEVVVAGSGRGAEP 175

Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
            +L   L  RG+   L EGG  +    I +  VD + L  S  +              L 
Sbjct: 176 ARLRAELAARGLRRQLAEGGPQLLGRLIAADTVDELCLTVSPFLTAGDASRIAHAPQALT 235

Query: 336 KNFMCVRRDYFGSD--VCLEYIGK 357
                        D  +   Y+  
Sbjct: 236 TPARLRPASILAEDGFLFTRYVRD 259


>gi|239827788|ref|YP_002950412.1| ComE operon protein 2 [Geobacillus sp. WCH70]
 gi|239808081|gb|ACS25146.1| ComE operon protein 2 [Geobacillus sp. WCH70]
          Length = 151

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 56/151 (37%), Gaps = 34/151 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------ 53
           M   ++D  FM+ +   +      T T  +V   IV+D  +I  G      G        
Sbjct: 1   MERITWDQYFMAQSHLLALRS---TCTRLAVGATIVRDKRIIAGGYNGSIAGGAHCIDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A+ +    G    GA  YVT  PC H      C + II+ GIR
Sbjct: 58  CYVIDGHCVRTIHAEMNAIIQCAKFGVPTEGAEMYVTHFPCLH------CCKAIIQSGIR 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            V    D  +   +   L+   Q  + V+ +
Sbjct: 112 AVYYAQDYKNHPYA---LELFEQAKVRVEHV 139


>gi|323331315|gb|EGA72733.1| Fcy1p [Saccharomyces cerevisiae AWRI796]
          Length = 153

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 58/155 (37%), Gaps = 19/155 (12%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCPHAEVQ 58
           S +D + M  A   +          P   CLI  KDG V+GRG            H E+ 
Sbjct: 3   SKWDQKGMDIAYEEAALG-YKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEIS 61

Query: 59  ALEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
            LE  G       +  T Y TL PC        C   II  GI R VV     +V    +
Sbjct: 62  TLENCGRLEGKVYKDTTLYTTLSPCDM------CTGAIIMYGIPRCVVG---ENVNFKSK 112

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           G ++L  +G  V  + +   K  +  ++  + +  
Sbjct: 113 GEKYLQTRGHEVVVVDDERCKKIMKQFIDERPQDW 147


>gi|11245466|gb|AAG33626.1|AF312392_1 cytosine deaminase-uracil phosphoribosyltransferase fusion protein
           [synthetic construct]
          Length = 373

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 58/155 (37%), Gaps = 19/155 (12%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCPHAEVQ 58
           S +D + M  A   +          P   CLI  KDG V+GRG            H E+ 
Sbjct: 8   SKWDQKGMDIAYEEAALG-YKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEIS 66

Query: 59  ALEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
            LE  G       +  T Y TL PC        C   II  GI R VV     +V    +
Sbjct: 67  TLENCGRLEGKVYKDTTLYTTLSPCDM------CTGAIIMYGIPRCVVG---ENVNFKSK 117

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           G ++L  +G  V  + +   K  +  ++  + +  
Sbjct: 118 GEKYLQTRGHEVVVVDDERCKKIMKQFIDERPQDW 152


>gi|34810531|pdb|1P6O|A Chain A, The Crystal Structure Of Yeast Cytosine Deaminase Bound To
           4(R)-Hydroxyl-3,4-Dihydropyrimidine At 1.14 Angstroms.
 gi|34810532|pdb|1P6O|B Chain B, The Crystal Structure Of Yeast Cytosine Deaminase Bound To
           4(R)-Hydroxyl-3,4-Dihydropyrimidine At 1.14 Angstroms.
 gi|46015452|pdb|1RB7|A Chain A, Yeast Cytosine Deaminase Crystal Form P212121 With Sodium
           Acetate.
 gi|46015453|pdb|1RB7|B Chain B, Yeast Cytosine Deaminase Crystal Form P212121 With Sodium
           Acetate
          Length = 161

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 58/155 (37%), Gaps = 19/155 (12%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCPHAEVQ 58
           S +D + M  A   +          P   CLI  KDG V+GRG            H E+ 
Sbjct: 11  SKWDQKGMDIAYEEAALG-YKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEIS 69

Query: 59  ALEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
            LE  G       +  T Y TL PC        C   II  GI R VV     +V    +
Sbjct: 70  TLENCGRLEGKVYKDTTLYTTLSPCDM------CTGAIIMYGIPRCVVG---ENVNFKSK 120

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           G ++L  +G  V  + +   K  +  ++  + +  
Sbjct: 121 GEKYLQTRGHEVVVVDDERCKKIMKQFIDERPQDW 155


>gi|6325319|ref|NP_015387.1| Fcy1p [Saccharomyces cerevisiae S288c]
 gi|2493561|sp|Q12178|FCY1_YEAST RecName: Full=Cytosine deaminase; AltName: Full=Cytosine
           aminohydrolase
 gi|30750134|pdb|1UAQ|A Chain A, The Crystal Structure Of Yeast Cytosine Deaminase
 gi|30750135|pdb|1UAQ|B Chain B, The Crystal Structure Of Yeast Cytosine Deaminase
 gi|805042|emb|CAA89179.1| unknown [Saccharomyces cerevisiae]
 gi|1314130|emb|CAA95006.1| unknown [Saccharomyces cerevisiae]
 gi|1762322|gb|AAC13409.1| cytosine deaminase [Saccharomyces cerevisiae]
 gi|2343114|gb|AAB67713.1| cytosine deaminase [Saccharomyces cerevisiae]
 gi|151942846|gb|EDN61192.1| cytosine deaminase [Saccharomyces cerevisiae YJM789]
 gi|190407999|gb|EDV11264.1| cytosine deaminase [Saccharomyces cerevisiae RM11-1a]
 gi|256268919|gb|EEU04266.1| Fcy1p [Saccharomyces cerevisiae JAY291]
 gi|259150215|emb|CAY87018.1| Fcy1p [Saccharomyces cerevisiae EC1118]
 gi|285815591|tpg|DAA11483.1| TPA: Fcy1p [Saccharomyces cerevisiae S288c]
 gi|323302562|gb|EGA56369.1| Fcy1p [Saccharomyces cerevisiae FostersB]
 gi|323335147|gb|EGA76437.1| Fcy1p [Saccharomyces cerevisiae Vin13]
 gi|323346295|gb|EGA80585.1| Fcy1p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323350206|gb|EGA84353.1| Fcy1p [Saccharomyces cerevisiae VL3]
          Length = 158

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 58/155 (37%), Gaps = 19/155 (12%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCPHAEVQ 58
           S +D + M  A   +          P   CLI  KDG V+GRG            H E+ 
Sbjct: 8   SKWDQKGMDIAYEEAALG-YKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEIS 66

Query: 59  ALEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
            LE  G       +  T Y TL PC        C   II  GI R VV     +V    +
Sbjct: 67  TLENCGRLEGKVYKDTTLYTTLSPCDM------CTGAIIMYGIPRCVVG---ENVNFKSK 117

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           G ++L  +G  V  + +   K  +  ++  + +  
Sbjct: 118 GEKYLQTRGHEVVVVDDERCKKIMKQFIDERPQDW 152


>gi|313768407|ref|YP_004062087.1| hypothetical protein MpV1_204 [Micromonas sp. RCC1109 virus MpV1]
 gi|312599103|gb|ADQ91127.1| hypothetical protein MpV1_204 [Micromonas sp. RCC1109 virus MpV1]
          Length = 145

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 54/152 (35%), Gaps = 32/152 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           S+D  FM  A + +   V        V C++VK+  +I  G   + G             
Sbjct: 6   SWDEYFMQTA-QLA--SVRSPCERLKVGCVLVKNNRLISMGYNGFLGGCEHKSIVRDGHE 62

Query: 54  ----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               HAE+ A+ +A   G       AYVT  PC +      C + +   GI++V    D 
Sbjct: 63  QATIHAEINAITDAAKRGASIDDCVAYVTHYPCLN------CYKALASSGIKKVYYKEDY 116

Query: 107 PDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138
            +  V           G+ +    E+E     
Sbjct: 117 RNDPVVEEL-----GYGVELIHSHETEACPQN 143


>gi|256028497|ref|ZP_05442331.1| deoxycytidylate deaminase [Fusobacterium sp. D11]
 gi|289766417|ref|ZP_06525795.1| deoxycytidylate deaminase [Fusobacterium sp. D11]
 gi|289717972|gb|EFD81984.1| deoxycytidylate deaminase [Fusobacterium sp. D11]
          Length = 161

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 51/148 (34%), Gaps = 33/148 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-------------TAYG 50
           ++D+ FM  A+  S         N  V   IV  D  ++G G                  
Sbjct: 7   NWDSYFMGIAILSSMRSK---DPNTQVGACIVNEDKRIVGVGYNGLPKGCDDKEFPWERD 63

Query: 51  GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           G           HAE+ A+  + +  +    YV L PC        C + II+ GI+ +V
Sbjct: 64  GEFLNTKYPYVCHAELNAILNSIKSLKDCIIYVALFPCHE------CTKAIIQSGIKEIV 117

Query: 102 VCVDDP-DVRVSGRGLQWLSQKGIIVDR 128
              D   D   +    + L   G+   R
Sbjct: 118 YLSDKYTDTDSNRASKKMLDSAGVKYRR 145


>gi|254303368|ref|ZP_04970726.1| dCMP deaminase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148323560|gb|EDK88810.1| dCMP deaminase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 161

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 51/148 (34%), Gaps = 33/148 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-------------TAYG 50
           ++D+ FM  A+  S         N  V   IV  D  ++G G                  
Sbjct: 7   NWDSYFMGIAILSSMRSK---DPNTQVGACIVNEDKRIVGVGYNGLPKGCDDKEFPWERD 63

Query: 51  GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           G           HAE+ A+  + +  +    YV L PC        C + II+ GI+ +V
Sbjct: 64  GEFLNTKYPYVCHAELNAILNSIKSLKDCIIYVALFPCHE------CTKAIIQSGIKEIV 117

Query: 102 VCVDDP-DVRVSGRGLQWLSQKGIIVDR 128
              D   +   +    + L   G+   R
Sbjct: 118 YLSDKYTNTDSNRASKKMLDAAGVKYRR 145


>gi|116515096|ref|YP_802725.1| hypothetical protein BCc_160 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256950|gb|ABJ90632.1| tRNA-specific adenosine deaminase [Buchnera aphidicola str. Cc
           (Cinara cedri)]
          Length = 153

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 23/161 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
           + S D  +M  AL+ +  ++G  +    +  L++K+  +I     +    +    HAE+ 
Sbjct: 1   MLSIDNYWMKYALKQA--YLGKKNGEVPIGSLLIKNNNLISSAWNSCINLFDASAHAEIL 58

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            +   G+       +    YVT EPC        C++ II   I +VV            
Sbjct: 59  VIRNGGKILKNYRLKNTILYVTHEPCFM------CSEAIINARINKVVYGSYSFKKNCFS 112

Query: 114 RGLQWLSQKGI------IVDRMMESEGKIFLHAYLTRQVEK 148
             + +L    I      I   ++  E    L  +  R+   
Sbjct: 113 YYINFLYINNIKHHIKEIKSGILLYECSNLLKNFFRRKRYT 153


>gi|118404850|ref|NP_001072562.1| tRNA-specific adenosine deaminase 2 [Xenopus (Silurana) tropicalis]
 gi|123905851|sp|Q0P4H0|ADAT2_XENTR RecName: Full=tRNA-specific adenosine deaminase 2; AltName:
           Full=Deaminase domain-containing protein 1; AltName:
           Full=tRNA-specific adenosine-34 deaminase subunit ADAT2
 gi|112419108|gb|AAI22085.1| deaminase domain containing 1 [Xenopus (Silurana) tropicalis]
          Length = 170

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 23/123 (18%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
           +M  A + ++  +   +    V CL+V D  V+G+G            HAE+ A+++  +
Sbjct: 8   WMHKAFQMAQDALN--NGEVPVGCLMVYDNQVVGKGRNEVNETKNATRHAEMVAIDQVLD 65

Query: 66  EA-----------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
                             YVT+EPC        CA  +    I  VV    +      G 
Sbjct: 66  WCEKNSKKSRDVFENIVLYVTVEPCIM------CAGALRLLKIPLVVYGCRNERFGGCGS 119

Query: 115 GLQ 117
            L 
Sbjct: 120 VLN 122


>gi|50303913|ref|XP_451904.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641036|emb|CAH02297.1| KLLA0B08437p [Kluyveromyces lactis]
          Length = 152

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 61/156 (39%), Gaps = 19/156 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG--GCP--HAEV 57
           ++ +D + M  A   +          P   CLI    G ++G G       G P  H E 
Sbjct: 1   MAEWDKKGMDKAYEEAAIG-YKEGGVPIGGCLIDNLTGEILGSGHNMRFQKGSPTLHGET 59

Query: 58  QALEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
             LE AG       +  T Y TL PC        C   I+  GI RVVV     +V    
Sbjct: 60  STLENAGRLKGSVYKHCTMYTTLSPCDM------CTGAILLYGIGRVVVG---ENVNFKS 110

Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            G ++L+++GI V  + +      +  ++ ++ E  
Sbjct: 111 PGEKYLAERGIEVKVVDDERCIEIMKDFIAKRPEDW 146


>gi|300933920|ref|ZP_07149176.1| putative cytosine/adenosine deaminase [Corynebacterium resistens
           DSM 45100]
          Length = 173

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 49/151 (32%), Gaps = 26/151 (17%)

Query: 8   ARFMSAALRFSRWHVGLT-STNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALE 61
             +M  AL  +    G T   +  V  ++   DG  +  G            HAE+ A+ 
Sbjct: 29  EAWMRRALEVA----GATPRGDVPVGAVVYGPDGRELAVGFNQREKDSDPLGHAEIAAIR 84

Query: 62  EA------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            A             T  VTLEPC+       CA   +   ++R+V    +P     G  
Sbjct: 85  AAVAELGDAWRLEDCTLVVTLEPCAM------CAGAALGARVKRIVYGAREPKTGACGSV 138

Query: 116 LQWLSQK----GIIVDRMMESEGKIFLHAYL 142
                +       +   ++  E +  +  + 
Sbjct: 139 WDLPREAPLHKAEVFGGVLRDECEALVKEFF 169


>gi|148264239|ref|YP_001230945.1| dCMP deaminase [Geobacter uraniireducens Rf4]
 gi|146397739|gb|ABQ26372.1| dCMP deaminase [Geobacter uraniireducens Rf4]
          Length = 156

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 57/162 (35%), Gaps = 43/162 (26%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
           M   S+D  FM      ++    L      V  +IVKD  ++  G               
Sbjct: 1   MSRPSWDEYFMEITHLVAKRSTCLRR---QVGAVIVKDKNILATGYNGAPSGVSHCLDVG 57

Query: 47  -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE  A+ +A   G    G+T Y T  PC        C++
Sbjct: 58  CLREKLNIPSGERHELCRGLHAEQNAIIQAAKHGTTIDGSTLYCTTLPCII------CSK 111

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
            +I  GI+R+V  V  PD        + + + G+++DR  E 
Sbjct: 112 MVINAGIKRIVYEVGYPDQLAE----EMIKESGVVIDRFPEK 149


>gi|62955247|ref|NP_001017639.1| deoxycytidylate deaminase [Danio rerio]
 gi|62202187|gb|AAH92809.1| DCMP deaminase [Danio rerio]
          Length = 201

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 35/155 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
            +   FM+ A   ++        N  V   IV ++  ++G G                  
Sbjct: 29  EWPEYFMAVAFLSAQRSK---DPNSQVGACIVNQENKIVGIGYNGMPNGCDDDLLPWSRS 85

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G + YV L PC+       CA+ II+ GI+ 
Sbjct: 86  ADNKLDTKYPYVCHAELNAIMNKNSADVKGCSIYVALFPCNE------CAKLIIQAGIKD 139

Query: 100 VVVCVD-DPDVRVSGRGLQWLSQKGIIVDRMMESE 133
           V+   D   D        + L+  G+   +    +
Sbjct: 140 VIYLSDKYHDTPEMTASRRLLNLAGVTYKQFKPKQ 174


>gi|16081448|ref|NP_393792.1| dCMP deaminase [Thermoplasma acidophilum DSM 1728]
 gi|10639455|emb|CAC11457.1| probable dCMP deaminase [Thermoplasma acidophilum]
          Length = 170

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 56/172 (32%), Gaps = 47/172 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNP---SVACLIVKDGIVIGRGV--------------- 46
           ++D  FM  A      ++  + TN     V  +IVKD  V+  G                
Sbjct: 8   TWDEYFMRMA------YLAASRTNCIRRKVGAVIVKDRNVLATGYNGPPSGTAHCDVVGC 61

Query: 47  ------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQF 91
                              HAE  A+ +A   G   + +T YVT  PC        C++ 
Sbjct: 62  IREDLKVPSGERHELCRGLHAEQNAIIQAAVHGVSIKDSTIYVTTHPC------VVCSKM 115

Query: 92  IIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT 143
           I+   I+ +V     PD       +   S   +    + E E K  +  +  
Sbjct: 116 IMNAQIKEIVYAEGYPD--ELAELMLLESDVKVRKFTLPEQEVKAMIGEFYY 165


>gi|324529700|gb|ADY49034.1| Guanine deaminase [Ascaris suum]
          Length = 153

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 46/151 (30%), Gaps = 18/151 (11%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           FM  A+  +   V      P    +IV++  +I  G            HAE+ A+  A  
Sbjct: 3   FMRKAIDEACQGVDNGDGGP-FGAVIVRNNSIIATGHNMVLKTNDPTAHAEITAIRNACS 61

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                +  G   Y +  PC      P C    +   +  +       D    G   +   
Sbjct: 62  ALGTFDLSGCQLYTSCYPC------PMCMGAALWSRVNAIYYATTPEDAEAVGFDDKAFY 115

Query: 121 Q--KGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           +  K  + D + + E     +        ++
Sbjct: 116 EFLKNPVSDGVRKVEQIPVDNQMEPFNKWQQ 146


>gi|310821757|ref|YP_003954115.1| cytidine and deoxycytidylate deaminase zinc-binding
           domain-containing protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309394829|gb|ADO72288.1| Cytidine and deoxycytidylate deaminase zinc-binding domain protein
           [Stigmatella aurantiaca DW4/3-1]
          Length = 149

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 55/152 (36%), Gaps = 35/152 (23%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------------- 47
           SS+D  FM  A + +      T     V  L+V+D  ++  G                  
Sbjct: 5   SSWDQYFMDIARQVASRA---TCDRKHVGALLVRDRTILSTGYNGSIRGLPHCDDVGHMM 61

Query: 48  ---AYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                    HAE  A+ +A   G    GAT Y T  PC       PC + I   G  R+V
Sbjct: 62  ENGHCVATVHAEANAIIQAAKNGVSIDGATIYTTASPCW------PCFKLIANSGCVRIV 115

Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
                 D R+     ++ ++ G+ +  + E+ 
Sbjct: 116 FGEFYRDPRI----FEYAARLGLELTGLGEAA 143


>gi|155372299|ref|NP_001094762.1| deoxycytidylate deaminase [Bos taurus]
 gi|151555965|gb|AAI49762.1| DCTD protein [Bos taurus]
 gi|296472434|gb|DAA14549.1| dCMP deaminase [Bos taurus]
          Length = 178

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 52/146 (35%), Gaps = 35/146 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        N  V   IV  +  ++G G                  
Sbjct: 14  EWPEYFMAVAFLSAQRSK---DPNSQVGACIVNAENKIVGIGYNGMPNGCSDDLLPWRRT 70

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G T YV L PC+       CA+ II+ GI+ 
Sbjct: 71  AENILDTKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNE------CAKLIIQAGIKE 124

Query: 100 VVVCVDDPDVRVSGRGLQWLSQ-KGI 124
           V+   D           + L +  G+
Sbjct: 125 VIFMSDKYHDSNETTAARLLFEMAGV 150


>gi|193215821|ref|YP_001997020.1| CMP/dCMP deaminase [Chloroherpeton thalassium ATCC 35110]
 gi|193089298|gb|ACF14573.1| CMP/dCMP deaminase zinc-binding [Chloroherpeton thalassium ATCC
           35110]
          Length = 161

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 59/149 (39%), Gaps = 23/149 (15%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA 63
           R M  A R +       +  P V  ++   +G ++GRG            HAE+ AL  A
Sbjct: 10  RLMEMAFREAEKA-FEKNEVP-VGAVVFDSNGAIVGRGFNQVEMLCDTTAHAEMIALTSA 67

Query: 64  ----GEE-ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
               G++     T  VT+EPC      P CA  ++   + R++    D  +  +G     
Sbjct: 68  MNTLGDKYLTDCTLAVTMEPC------PMCAGAMVNAKLGRLIFGSYDAKMGAAGTVFNL 121

Query: 119 -----LSQKGIIVDRMMESEGKIFLHAYL 142
                L+ +  ++  ++E +    L ++ 
Sbjct: 122 TTSKFLNHQMEVIGGILEEKTTEILKSFF 150


>gi|326474735|gb|EGD98744.1| deoxycytidylate deaminase [Trichophyton tonsurans CBS 112818]
 gi|326484864|gb|EGE08874.1| deoxycytidylate deaminase [Trichophyton equinum CBS 127.97]
          Length = 348

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 45/149 (30%), Gaps = 41/149 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
           ++D  FM  A   +            V C+IVKD  V+  G                   
Sbjct: 185 AWDQYFMQLA-SLAAQRSNCMKR--RVGCVIVKDNRVMSTGYNGTPRNMKNCNEGGCPRC 241

Query: 48  --AYGGC--------PHAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                G          HAE  AL EAG +    G+  Y    PC        C+  I + 
Sbjct: 242 NLGQAGGTVLSTCLCMHAEENALLEAGRQRIGEGSILYCDTCPCL------TCSVKIAQL 295

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           GI  VV         +       L + G+
Sbjct: 296 GISEVVYSQGY---HMDNDSAAVLKEAGV 321


>gi|327301817|ref|XP_003235601.1| deoxycytidylate deaminase [Trichophyton rubrum CBS 118892]
 gi|326462953|gb|EGD88406.1| deoxycytidylate deaminase [Trichophyton rubrum CBS 118892]
          Length = 348

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 45/149 (30%), Gaps = 41/149 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
           ++D  FM  A   +            V C+IVKD  V+  G                   
Sbjct: 185 AWDQYFMQLA-SLAAQRSNCMKR--RVGCVIVKDNRVMSTGYNGTPRNMKNCNEGGCPRC 241

Query: 48  --AYGGC--------PHAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                G          HAE  AL EAG +    G+  Y    PC        C+  I + 
Sbjct: 242 NLGQAGGTVLSTCLCMHAEENALLEAGRQRIGEGSILYCDTCPCL------TCSVKIAQL 295

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           GI  VV         +       L + G+
Sbjct: 296 GISEVVYSQGY---HMDNDSAAVLKEAGV 321


>gi|325298986|ref|YP_004258903.1| Guanine deaminase [Bacteroides salanitronis DSM 18170]
 gi|324318539|gb|ADY36430.1| Guanine deaminase [Bacteroides salanitronis DSM 18170]
          Length = 155

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 37/111 (33%), Gaps = 17/111 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
              M  A+  S  +V           +I ++G +I  G       +    HAEV A+  A
Sbjct: 4   EELMRKAIELSVRNVAEGGG--PFGAVIARNGEIISTGTNRVTPDHDPTAHAEVSAIRAA 61

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
                  +  G   Y + EPC      P C   I    + R+    D  D 
Sbjct: 62  CRELGTFDLSGCEIYTSCEPC------PMCLGAIYWAHLDRMYYGNDKHDA 106


>gi|325964826|ref|YP_004242732.1| cytosine/adenosine deaminase [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470913|gb|ADX74598.1| cytosine/adenosine deaminase [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 164

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 59/152 (38%), Gaps = 19/152 (12%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQA 59
           S+ D  F  AA + ++   G       +   + + G+VI  G       G P  H E+ A
Sbjct: 15  SALDPAF-EAAYQAAQKSAGEGG--IPIGAALARGGVVIAAGHNERVQKGDPIAHGEMSA 71

Query: 60  LEEAG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           L  AG  +  R  T Y TL PC+    +      II+  I RVVV     + R  G   +
Sbjct: 72  LRAAGRQKSYRDTTLYTTLAPCAMCTGT------IIQFKIPRVVVG----EARTFGGEFE 121

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            L  +G+ V  + +      +  +     +  
Sbjct: 122 LLRSRGVEVVVLDDQRCVDMMQTFQANNPDLW 153


>gi|48477494|ref|YP_023200.1| deaminase [Picrophilus torridus DSM 9790]
 gi|48430142|gb|AAT43007.1| deaminase [Picrophilus torridus DSM 9790]
          Length = 172

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 54/170 (31%), Gaps = 41/170 (24%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           ++D  FM  A   +      T     V  +IVKD  V+  G                   
Sbjct: 9   TWDEYFMRMA-YLAASRSNCTRR--KVGAVIVKDNQVLATGYNGPPTHAVNCDLVGCIRD 65

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G   +GA  YVT  PC        C++ ++ 
Sbjct: 66  ELGIQSGERHELCRGLHAEQNAIIQAAVNGVSIKGAKIYVTTHPC------VVCSKMLMN 119

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
             I  ++     PD     + +   S   +    + +SE +  +  Y   
Sbjct: 120 AYIDEIIYSEGYPDDL--AKLMLLESDIKVRRFELPDSEVENIIGEYYIH 167


>gi|225419861|ref|ZP_03762164.1| hypothetical protein CLOSTASPAR_06202 [Clostridium asparagiforme
           DSM 15981]
 gi|225041485|gb|EEG51731.1| hypothetical protein CLOSTASPAR_06202 [Clostridium asparagiforme
           DSM 15981]
          Length = 195

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 52/152 (34%), Gaps = 37/152 (24%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT---------------- 47
           ++D  FM  A+  +         +  V   IV  D  ++  G                  
Sbjct: 41  TWDEYFMGVAI-LA--GKRSKDPSTQVGACIVSPDNKILSMGYNGFPKGCSDDEFPWERE 97

Query: 48  ---------AYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                     Y    H+E+ A+    G    G+  YVTL PC+       CA+ II+ GI
Sbjct: 98  NEADDPYNAKYFYSTHSELNAILNYRGGSLEGSKLYVTLFPCNE------CAKAIIQAGI 151

Query: 98  RRVVVCVDDP-DVRVSGRGLQWLSQKGIIVDR 128
           + +V   D   D        + L+  G+   +
Sbjct: 152 KTIVYGQDKYADTPAVQASKRMLNAAGVRYYQ 183


>gi|331266750|ref|YP_004326380.1| dCMP deaminase, competence protein [Streptococcus oralis Uo5]
 gi|326683422|emb|CBZ01040.1| dCMP deaminase, competence protein [Streptococcus oralis Uo5]
          Length = 155

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 55/149 (36%), Gaps = 33/149 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
           ++D  F + AL  +      T     V  ++VKD  VI  G      G            
Sbjct: 7   AWDEYFAAQALLIANRS---TCKRAKVGAVLVKDNKVISTGYNGSVSGTEHCIDHDCLVI 63

Query: 54  --------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                   HAEV A+ +  E    RG TAYVT  PC +      C + +++ G +RVV  
Sbjct: 64  EGHCVRTLHAEVNAILQGAERGVPRGFTAYVTHFPCLN------CTKQLLQVGCKRVVYI 117

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
                 R+         +KGI +  +   
Sbjct: 118 NQY---RMDDYAKYLYQEKGIELTYLPLE 143


>gi|255283094|ref|ZP_05347649.1| putative deoxycytidylate deaminase [Bryantella formatexigens DSM
           14469]
 gi|255266396|gb|EET59601.1| putative deoxycytidylate deaminase [Bryantella formatexigens DSM
           14469]
          Length = 160

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 53/145 (36%), Gaps = 34/145 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-------------TAYG 50
           S+D  FM  A+      +     N  V   IV  D  ++  G                  
Sbjct: 9   SWDEYFMGVAM---LSGMRSKDPNTQVGACIVSSDNKILSMGYNGFPIGCSDDDFPWERE 65

Query: 51  G---------CPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           G           H+E+ A+    G    GAT YV+L PC+       CA+ II+ GI+++
Sbjct: 66  GEALDTKYLYTTHSELNAILNYRGGSLDGATLYVSLFPCNE------CAKAIIQAGIKQI 119

Query: 101 VVCVDDP-DVRVSGRGLQWLSQKGI 124
           V   D   D        + L+  G+
Sbjct: 120 VYDCDKYADTASVLASKRMLTTAGV 144


>gi|163844392|ref|YP_001622047.1| hypothetical protein BSUIS_B0208 [Brucella suis ATCC 23445]
 gi|163675115|gb|ABY39225.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
          Length = 157

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 42/107 (39%), Gaps = 17/107 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG-- 64
           M  AL  +    G     P +  +IV+DG +I R             HAE+  + +AG  
Sbjct: 16  MDIALEEAH-AAGERGEVP-IGAIIVRDGEIIARAGNRTREFNDVTAHAEILTIRQAGEM 73

Query: 65  ---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
              E       YVTLEPC+       CA  I    IRR+     DP 
Sbjct: 74  LGSERLIDCDLYVTLEPCAM------CAAAISFARIRRLYYGASDPK 114


>gi|184157635|ref|YP_001845974.1| cytosine/adenosine deaminase [Acinetobacter baumannii ACICU]
 gi|183209229|gb|ACC56627.1| Cytosine/adenosine deaminase [Acinetobacter baumannii ACICU]
          Length = 158

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 39/112 (34%), Gaps = 21/112 (18%)

Query: 8   ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
             F+  A+  +        G          +IVKDG VI  GV           HAE+ A
Sbjct: 5   QEFLRQAIELAYNNIEKG-GR-----PFGAVIVKDGKVIASGVNQILTTNDPTAHAELLA 58

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRS---PPCAQFIIECGIRRVVVCVDDPD 108
           +  A +    A     LE CS +      P C   +   GI+ V     + D
Sbjct: 59  IRAASQVLGTA----NLEGCSVFASGHPCPMCMAAMRLAGIKTVNYAYSNED 106


>gi|169796435|ref|YP_001714228.1| guanine deaminase (Guanase) (guanine aminase) (guanine
           aminohydrolase) (GAH) (GDEase) [Acinetobacter baumannii
           AYE]
 gi|213156454|ref|YP_002318874.1| guanine deaminase [Acinetobacter baumannii AB0057]
 gi|215483897|ref|YP_002326122.1| Guanine deaminase(Guanase) [Acinetobacter baumannii AB307-0294]
 gi|301347084|ref|ZP_07227825.1| Guanine deaminase(Guanase) [Acinetobacter baumannii AB056]
 gi|301512279|ref|ZP_07237516.1| Guanine deaminase(Guanase) [Acinetobacter baumannii AB058]
 gi|301596132|ref|ZP_07241140.1| Guanine deaminase(Guanase) [Acinetobacter baumannii AB059]
 gi|332854738|ref|ZP_08435516.1| putative guanine deaminase [Acinetobacter baumannii 6013150]
 gi|332865718|ref|ZP_08436528.1| putative guanine deaminase [Acinetobacter baumannii 6013113]
 gi|169149362|emb|CAM87246.1| Guanine deaminase (Guanase) (Guanine aminase) (Guanine
           aminohydrolase) (GAH) (GDEase) [Acinetobacter baumannii
           AYE]
 gi|213055614|gb|ACJ40516.1| guanine deaminase [Acinetobacter baumannii AB0057]
 gi|213986575|gb|ACJ56874.1| Guanine deaminase(Guanase) [Acinetobacter baumannii AB307-0294]
 gi|332727824|gb|EGJ59227.1| putative guanine deaminase [Acinetobacter baumannii 6013150]
 gi|332735145|gb|EGJ66227.1| putative guanine deaminase [Acinetobacter baumannii 6013113]
          Length = 160

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 39/112 (34%), Gaps = 21/112 (18%)

Query: 8   ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
             F+  A+  +        G          +IVKDG VI  GV           HAE+ A
Sbjct: 5   QEFLRQAIELAYNNIEKG-GR-----PFGAVIVKDGKVIASGVNQILTTNDPTAHAELLA 58

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRS---PPCAQFIIECGIRRVVVCVDDPD 108
           +  A +    A     LE CS +      P C   +   GI+ V     + D
Sbjct: 59  IRTASQVLGTA----NLEGCSVFASGHPCPMCMAAMRLAGIKTVNYAYSNED 106


>gi|123367029|ref|XP_001296868.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121876711|gb|EAX83938.1| hypothetical protein TVAG_001410 [Trichomonas vaginalis G3]
          Length = 238

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 7/100 (7%)

Query: 221 RII-LDPHFKLSLDSKI--IKTALLAPVI-IVTENDDPVLALAFRKKNINIIYC--DCRD 274
            ++ +DP  KL  D           A VI I+TE   P      R+ N++ I    +  D
Sbjct: 89  YVVGIDPSGKLPWDRNTIKFNERPEAHVIEILTEKASPQYKNLLRRLNVSYIVAGKEDVD 148

Query: 275 LKKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
            K +++ L     +  L VEGG  +  S + +++VD + L
Sbjct: 149 WKTVMSKLKKDFHINVLSVEGGGMINWSVLKAKIVDEVSL 188


>gi|123367027|ref|XP_001296867.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|123500267|ref|XP_001327815.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121876710|gb|EAX83937.1| hypothetical protein TVAG_001400 [Trichomonas vaginalis G3]
 gi|121910749|gb|EAY15592.1| hypothetical protein TVAG_496110 [Trichomonas vaginalis G3]
          Length = 238

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 7/100 (7%)

Query: 221 RII-LDPHFKLSLDSKI--IKTALLAPVI-IVTENDDPVLALAFRKKNINIIYC--DCRD 274
            ++ +DP  KL  D           A VI I+TE   P      R+ N++ I    +  D
Sbjct: 89  YVVGIDPSGKLPWDRNTIKFNERPEAHVIEILTEKASPQYKNLLRRLNVSYIVAGKEDVD 148

Query: 275 LKKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
            K +++ L     +  L VEGG  +  S + +++VD + L
Sbjct: 149 WKTVMSKLKKDFHINVLSVEGGGMINWSVLKAKIVDEVSL 188


>gi|123304805|ref|XP_001291231.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121864983|gb|EAX78301.1| hypothetical protein TVAG_337330 [Trichomonas vaginalis G3]
          Length = 150

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 7/100 (7%)

Query: 221 RII-LDPHFKLSLDSKI--IKTALLAPVI-IVTENDDPVLALAFRKKNINIIYC--DCRD 274
            ++ +DP  KL  D           A VI I+TE   P      R+ N++ I    +  D
Sbjct: 1   YVVGIDPSGKLPWDRNTIKFNERPEAHVIEILTEKASPQYKNLLRRLNVSYIVAGKEDVD 60

Query: 275 LKKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
            K +++ L     +  L VEGG  +  S + +++VD + L
Sbjct: 61  WKTVMSKLKKDFHINVLSVEGGGMINWSVLKAKIVDEVSL 100


>gi|210633850|ref|ZP_03297865.1| hypothetical protein COLSTE_01782 [Collinsella stercoris DSM 13279]
 gi|210159019|gb|EEA89990.1| hypothetical protein COLSTE_01782 [Collinsella stercoris DSM 13279]
          Length = 156

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 50/156 (32%), Gaps = 36/156 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG----------GCP 53
           S+D  FM AA+  S         N  V   I   +  ++  G               G  
Sbjct: 10  SWDEFFMRAAVAASLRSK---DPNTQVGACIADTNNRILSVGYNGTPSALNDDDFPWGTA 66

Query: 54  ------------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE  A+     + ++  GAT YVTL PC    ++      +++ GI 
Sbjct: 67  DDPLHDKHNYVIHAEANAILNYRGSLKDMAGATVYVTLFPCHECAKT------LVQAGIG 120

Query: 99  RVVVCVDDPDVRVSGR-GLQWLSQKGIIVDRMMESE 133
            VV   D              L + G+   ++    
Sbjct: 121 EVVYLDDKYCGTEDNLISKNILDRCGVTYRQVSLDA 156


>gi|304384459|ref|ZP_07366862.1| competence protein ComEB [Prevotella marshii DSM 16973]
 gi|304334453|gb|EFM00743.1| competence protein ComEB [Prevotella marshii DSM 16973]
          Length = 147

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 53/149 (35%), Gaps = 32/149 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----------------TA 48
             D R++  A  ++            V  L+VKD ++I  G                 T 
Sbjct: 9   ELDLRYLRMARIWAENSYCQRRK---VGALVVKDKMIISDGYNGTPSGFENICEDEDNTT 65

Query: 49  YGGCPHAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE  A   L  +   +  +T YVT  PC        C++ II+ GI+RVV    
Sbjct: 66  KPYVLHAEANAITKLARSSNNSDNSTLYVTASPCIE------CSKLIIQAGIKRVVYAEK 119

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
                    G++ + +  I V  +   E 
Sbjct: 120 YRL----EDGVELMKKANIEVIYLNPDEH 144


>gi|253581046|ref|ZP_04858307.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847709|gb|EES75678.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 163

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 51/147 (34%), Gaps = 34/147 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
           S+D  FM  A+      +     N  V   IV  D  ++  G                  
Sbjct: 12  SWDEYFMGVAMM---SGMRSKDPNSQVGACIVSEDNKILSMGYNGFPKGCSDDEFPWARE 68

Query: 47  -----TAYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                T Y    H+E+ A+    G    GA  YV+L PC+       CA+ II+ GI+ +
Sbjct: 69  GDSLHTKYFYVTHSELNAILNYRGGSLEGAKLYVSLFPCNE------CAKAIIQAGIKTI 122

Query: 101 VVCVDDP-DVRVSGRGLQWLSQKGIIV 126
           V   D   D        + L   G+  
Sbjct: 123 VYDCDKYADTPAVIASKRMLDAAGVRY 149


>gi|297570280|ref|YP_003691624.1| Guanine deaminase [Desulfurivibrio alkaliphilus AHT2]
 gi|296926195|gb|ADH87005.1| Guanine deaminase [Desulfurivibrio alkaliphilus AHT2]
          Length = 156

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 24/115 (20%)

Query: 8   ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
            +F++A +  +    R   G        A L+V+D  +IGRG            HAEV+A
Sbjct: 4   EKFIAATIALAGETMRRGDGG-----PFAALVVRDHEIIGRGWNRVTSANDPTAHAEVEA 58

Query: 60  LEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           +  A  +       G T YV  EPC      P C       GI ++    D  D 
Sbjct: 59  IRAACAQVGDFSLAGCTLYVNCEPC------PMCLAAAYWAGIEQIYYAADRHDA 107


>gi|50742655|ref|XP_419709.1| PREDICTED: similar to DEADC1 protein [Gallus gallus]
          Length = 172

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 23/127 (18%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
             +A +M  A   ++    L +    V CL+V DG  IG+G            HAE+ A+
Sbjct: 2   EDEAAWMERAFSMAQEA--LEAGEVPVGCLLVYDGAAIGKGRNEVNETKNATRHAEMVAI 59

Query: 61  EEAGEEAR-----------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           ++  E  +            +  YVT+EPC        CA  +    I RVV    +   
Sbjct: 60  DQVLEWCQQHKKDHEEVFSHSVLYVTVEPCIM------CAAALRLMKIPRVVYGCRNERF 113

Query: 110 RVSGRGL 116
              G  L
Sbjct: 114 GGCGSVL 120


>gi|284040576|ref|YP_003390506.1| cytosine deaminase [Spirosoma linguale DSM 74]
 gi|283819869|gb|ADB41707.1| Cytosine deaminase [Spirosoma linguale DSM 74]
          Length = 144

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 19/142 (13%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
            D  FM  A+  +R    L+     +   +VK+G ++  G            H E+  L 
Sbjct: 1   MDE-FMQEAINQARKS--LSEGGIPIGSSLVKNGELVASGHNKRVQENNPILHGEMDCLN 57

Query: 62  EAG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
            AG     R    Y TL PC     +      I++  I +V+V     + R      +++
Sbjct: 58  NAGRVGSFRNTVIYSTLMPCYMCAGT------IVQFKIPKVIVG----ESRTFLGAREFM 107

Query: 120 SQKGIIVDRMMESEGKIFLHAY 141
            Q G+ V  +   E    ++ +
Sbjct: 108 EQHGVEVIDLDLPECVDMMNQF 129


>gi|255035691|ref|YP_003086312.1| CMP/dCMP deaminase zinc-binding [Dyadobacter fermentans DSM 18053]
 gi|254948447|gb|ACT93147.1| CMP/dCMP deaminase zinc-binding [Dyadobacter fermentans DSM 18053]
          Length = 140

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 46/126 (36%), Gaps = 17/126 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG--VTAYGG--CPHAEVQALEEA 63
            +F+      +       S N  V  +IV++G+++G G   T        HAEV+A+ +A
Sbjct: 5   HKFLQRCHELALQAG--RSGNTPVGAVIVREGVIVGEGIEATRPDNDITRHAEVEAIRDA 62

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                 ++  G   Y T EPC        C+  I    I  V      P V         
Sbjct: 63  LNRLGTDKLTGCAMYTTHEPCI------LCSYAIRHYQISWVGFEHAVPAVGGVSSPWPI 116

Query: 119 LSQKGI 124
           L+   I
Sbjct: 117 LTAADI 122


>gi|254430861|ref|ZP_05044564.1| tRNA-specific adenosine deaminase [Cyanobium sp. PCC 7001]
 gi|197625314|gb|EDY37873.1| tRNA-specific adenosine deaminase [Cyanobium sp. PCC 7001]
          Length = 206

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 57/156 (36%), Gaps = 20/156 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
           AR+M   LR ++  VG     P  A ++ + G  IG G            HAE+ AL +A
Sbjct: 51  ARWMERLLRCAQR-VGEDGEIPVAAAVLDQHGRCIGWGCNRRERQQDPLGHAELVALRQA 109

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            +          T  VTLEPC      P CA  +++  I  +V    DP     G  L  
Sbjct: 110 SQLLGDWRLNSCTLLVTLEPC------PMCAGALVQARIGTLVYGAPDPKRGAVGSCLDL 163

Query: 119 LS----QKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
           +        + V   +  E    L     RQ  +  
Sbjct: 164 VRHPSAHHHMRVVGGLAGEQAGELLKAWFRQRRQPP 199


>gi|91201072|emb|CAJ74130.1| similar to guanine deaminase [Candidatus Kuenenia stuttgartiensis]
          Length = 182

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 21/113 (18%)

Query: 8   ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
            ++M  A+  ++  +  G T         I+K+  +I               HAE+ A+ 
Sbjct: 30  EKWMRLAINKAKEGILDGQT----PFGACIIKNNRLISCVHNHVWKNTDITAHAEIIAIR 85

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           EA +     +  G T Y T EPC      P C        I ++V      D 
Sbjct: 86  EACKILNTVDLSGCTIYSTCEPC------PMCFSACHWARIAKIVYGASIKDA 132


>gi|260886275|ref|ZP_05897538.1| putative deoxycytidylate deaminase [Selenomonas sputigena ATCC
           35185]
 gi|330839740|ref|YP_004414320.1| dCMP deaminase [Selenomonas sputigena ATCC 35185]
 gi|260863994|gb|EEX78494.1| putative deoxycytidylate deaminase [Selenomonas sputigena ATCC
           35185]
 gi|329747504|gb|AEC00861.1| dCMP deaminase [Selenomonas sputigena ATCC 35185]
          Length = 163

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 55/160 (34%), Gaps = 32/160 (20%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVT---------------- 47
           S+D  FM  AL            +  V   IV +   ++G G                  
Sbjct: 4   SWDEYFMGIALFSKYRSK---DPHTQVGACIVNEDKHIVGVGYNGMPNGCSDAEFPWGST 60

Query: 48  ------AYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                  Y    HAE+ A+  A    +G   Y +L PC+       C + II+ GI+ V+
Sbjct: 61  GEFGDKKYAYVVHAELNAILNASTSLKGCRIYTSLFPCNE------CCKAIIQSGIKEVI 114

Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
              D      S R  + +     +  R +E++ +     +
Sbjct: 115 YLSDKYAATDSTRASKRMFAAAGVHYRRLETDIEELPVNF 154


>gi|167520965|ref|XP_001744821.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776435|gb|EDQ90054.1| predicted protein [Monosiga brevicollis MX1]
          Length = 143

 Score = 62.6 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 47/122 (38%), Gaps = 34/122 (27%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV---------------------- 46
           +MS A+  ++        N  V C I+  DGIV+  G                       
Sbjct: 12  YMSMAMLAAKRSK---DPNTQVGCTIINPDGIVVSMGYNGFPIGCSDQELPWQKHSANPL 68

Query: 47  -TAYGGCPHAEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
            T +    HAE+ A+     E  RG T Y TL PC+       CA+ II+ GI  VV   
Sbjct: 69  ETKFPYVCHAEMNAILNTNDESVRGCTLYATLFPCNE------CAKMIIQAGIVEVVYLC 122

Query: 105 DD 106
           D 
Sbjct: 123 DK 124


>gi|220910961|ref|YP_002486270.1| CMP/dCMP deaminase zinc-binding [Arthrobacter chlorophenolicus A6]
 gi|219857839|gb|ACL38181.1| CMP/dCMP deaminase zinc-binding [Arthrobacter chlorophenolicus A6]
          Length = 160

 Score = 62.6 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 16/126 (12%)

Query: 30  SVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
            +   + ++G+VI  G       G P  H E+ AL  AG +   R  T Y TL PC+   
Sbjct: 39  PIGAALARNGVVIASGHNERVQNGDPIAHGEMSALRAAGRQRSYRDTTLYTTLAPCAMCT 98

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT 143
            +      II+  I RVVV     + R      + L  +G+ V  + +      +  +  
Sbjct: 99  GT------IIQFKIPRVVVG----EARTFPGEFELLRSRGVEVIVLDDQRCVDMMREFQD 148

Query: 144 RQVEKR 149
              +  
Sbjct: 149 TSPDLW 154


>gi|303256500|ref|ZP_07342514.1| probable riboflavin-specific deaminase [Burkholderiales bacterium
           1_1_47]
 gi|302859991|gb|EFL83068.1| probable riboflavin-specific deaminase [Burkholderiales bacterium
           1_1_47]
          Length = 235

 Score = 62.6 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 60/153 (39%), Gaps = 12/153 (7%)

Query: 213 GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN-IIYCD 271
           G +E  P+ ++ D   +L   S  +  +    V ++  +          +  ++ I+   
Sbjct: 80  GKREGRPLAVVFDIQGRLHYKSPTL-PSGEHIVAVLGSHVTRAYQKELEEIGVSYIMRTP 138

Query: 272 CRDLKK---LLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
              L++    L  L     V  +L+EGGA    +F+   LVD + +     + GE G PS
Sbjct: 139 GSKLEETQSALKHLEQDFNVKHMLLEGGAITCGNFLQMGLVDELSMIVYPGLDGESGHPS 198

Query: 328 PLE-----EGYLEKNFMCVRRDYFGSD-VCLEY 354
            +E     E   +     +  +  GS  V L Y
Sbjct: 199 VIECQGVVEPLKKNRLELIDCETVGSGYVWLRY 231


>gi|326502722|dbj|BAJ98989.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 169

 Score = 62.6 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 38/110 (34%), Gaps = 24/110 (21%)

Query: 30  SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE--------------AGEEARGAT 71
            V C+IV++G VI  G            HAE++A++                 E+  G  
Sbjct: 11  PVGCVIVENGKVIASGSNRTNATRNATRHAEMEAIDVLLQEWQSIGLDQTLVAEKFAGCD 70

Query: 72  AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            YVT EPC        CA  +   GIR V     +      G  +     
Sbjct: 71  LYVTCEPCIM------CASALSILGIREVYFGCPNDKFGGCGSVMSLHES 114


>gi|26388773|dbj|BAB32363.2| unnamed protein product [Mus musculus]
          Length = 191

 Score = 62.6 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 44/128 (34%), Gaps = 27/128 (21%)

Query: 8   ARFMSAALRFSRWHVGLTSTN--PSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
            ++M  A R +   +     N    V CL+V +  V+G+G            HAE+ A++
Sbjct: 23  EKWMEEATRMANEAL----ENIEVPVGCLMVYNNEVVGKGTNEVNQTKNATRHAEMVAID 78

Query: 62  EAGEEA-----------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           +  +                  YVT+EPC        CA  +    I  VV    +    
Sbjct: 79  QVLDWCHQHGQSPSTVFEHTVLYVTVEPCIM------CAAALRLMKIPLVVYGCQNERFG 132

Query: 111 VSGRGLQW 118
             G  L  
Sbjct: 133 GCGSVLNI 140


>gi|331001151|ref|ZP_08324780.1| hypothetical protein HMPREF9439_02436 [Parasutterella
           excrementihominis YIT 11859]
 gi|329569272|gb|EGG51058.1| hypothetical protein HMPREF9439_02436 [Parasutterella
           excrementihominis YIT 11859]
          Length = 229

 Score = 62.6 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 60/153 (39%), Gaps = 12/153 (7%)

Query: 213 GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN-IIYCD 271
           G +E  P+ ++ D   +L   S  +  +    V ++  +          +  ++ I+   
Sbjct: 74  GKREGRPLAVVFDIQGRLHYKSPTL-PSGEHIVAVLGSHVTRAYQKELEEIGVSYIMRTP 132

Query: 272 CRDLKK---LLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
              L++    L  L     V  +L+EGGA    +F+   LVD + +     + GE G PS
Sbjct: 133 GSKLEETQSALKHLEQDFNVKHMLLEGGAITCGNFLQMGLVDELSMIVYPGLDGESGHPS 192

Query: 328 PLE-----EGYLEKNFMCVRRDYFGSD-VCLEY 354
            +E     E   +     +  +  GS  V L Y
Sbjct: 193 VIECQGVVEPLKKNRLELIDCETVGSGYVWLRY 225


>gi|320091485|gb|ADW08980.1| dihydrofolate reductase superfamily protein [Arthrobacter sp. HW08]
          Length = 45

 Score = 62.6 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 30/45 (66%)

Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
            + L +L  +GV  ++VEGG+++  +F+ + LVD +I+Y +  ++
Sbjct: 1   AEALGMLFDQGVRHVMVEGGSSILSTFLGAHLVDELIVYMAPTLL 45


>gi|333025189|ref|ZP_08453253.1| putative cytidine/deoxycytidine deaminase [Streptomyces sp. Tu6071]
 gi|332745041|gb|EGJ75482.1| putative cytidine/deoxycytidine deaminase [Streptomyces sp. Tu6071]
          Length = 151

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 60/156 (38%), Gaps = 19/156 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHA 55
           M  +     ++  A+  +R   GL      +   +   DG ++GRG            H 
Sbjct: 1   MLTTEQAQEWLRPAVEEAR--QGLAEGGVPIGAALYGADGTLLGRGHNRRVQDADPSSHG 58

Query: 56  EVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           E  A  +AG +   RG T   TL PC +      C+  I + GI RVV+           
Sbjct: 59  ETDAFRKAGRQRTYRGTTMVTTLSPCWY------CSGLIKQFGITRVVIGESTTFKGGE- 111

Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
               WL ++G+ + R+ + E    +  ++ +  +  
Sbjct: 112 ---DWLEEQGVEIIRLTDPECVDLMTEFIEKYPDVW 144


>gi|254585289|ref|XP_002498212.1| ZYRO0G04972p [Zygosaccharomyces rouxii]
 gi|238941106|emb|CAR29279.1| ZYRO0G04972p [Zygosaccharomyces rouxii]
          Length = 358

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 53/149 (35%), Gaps = 43/149 (28%)

Query: 5   SFDARFMSAA-LRFSRWHVGLTSTNPS---VACLIVKDGIVIGRGVTAYG---------G 51
           S+D  FM  A L  SR        N     V C+IV++  VI  G              G
Sbjct: 208 SWDTYFMKLATLAASRS-------NCMKRKVGCVIVRERRVIATGYNGTPRHLTNCFNGG 260

Query: 52  CP----------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
           CP                HAE  AL EAG +  GA A +  + C        C+  I++ 
Sbjct: 261 CPRCNDGDSQNLHTCLCLHAEENALLEAGRDRIGAHATLYCDTCPCL----TCSVKIVQT 316

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           GI  VV        R+     + L   GI
Sbjct: 317 GITEVVYSQSY---RMDEASFKVLISAGI 342


>gi|237738775|ref|ZP_04569256.1| deoxycytidylate deaminase [Fusobacterium sp. 2_1_31]
 gi|229423878|gb|EEO38925.1| deoxycytidylate deaminase [Fusobacterium sp. 2_1_31]
          Length = 160

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 52/146 (35%), Gaps = 33/146 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +D+ FM  AL  S         N  V   IV  D  ++G G                  
Sbjct: 7   DWDSYFMGIALLSSMRSK---DPNTQVGACIVNEDKRIVGVGYNGLPKGCEDTDFPWERE 63

Query: 47  -----TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                T Y    HAE+ A+  + +  +    YV L PC+       C++ II+ GI+ +V
Sbjct: 64  GEFLETKYPYVCHAELNAILNSIKSLKDCVIYVALFPCNE------CSKAIIQSGIKEIV 117

Query: 102 VCVDDPD-VRVSGRGLQWLSQKGIIV 126
              D  D    +    + L   G+  
Sbjct: 118 YLSDKYDGTDTNRASKKMLDSAGVKY 143


>gi|303320721|ref|XP_003070358.1| Cytidine and deoxycytidylate deaminase zinc-binding domain
           containing protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240110048|gb|EER28213.1| Cytidine and deoxycytidylate deaminase zinc-binding domain
           containing protein [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 345

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 55/174 (31%), Gaps = 41/174 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-- 53
           S+D  FM  A   +            V C++VKD  V+  G             GGCP  
Sbjct: 180 SWDEYFMQLA-SLAAQRSNCMKR--RVGCVLVKDRRVMSTGYNGTARNTRNCNQGGCPRC 236

Query: 54  ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                           HAE  AL EAG E    G   Y    PC        C+  I + 
Sbjct: 237 NLVQGTAQALSTCLCLHAEENALLEAGRERIGEGCILYCNTCPCL------TCSVKIAQL 290

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           GI  VV         +       L + G+ + +       +    ++ +Q   +
Sbjct: 291 GISEVVYSQAY---DMDRETAAILEEAGVKLRQFSPPCNGLIDIRFMFKQSCIQ 341


>gi|149744219|ref|XP_001497309.1| PREDICTED: similar to deaminase domain containing 1 [Equus
           caballus]
          Length = 186

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 21/104 (20%)

Query: 30  SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEARG-----------ATAYV 74
            V CL+V +  V+G+G            HAE+ A+++A    RG           A  YV
Sbjct: 38  PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQALAWCRGRGRCPAEVFERAVLYV 97

Query: 75  TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           T+EPC        CA  +    I  VV    +      G  L  
Sbjct: 98  TVEPC------VMCAAALRLMKIPLVVYGCQNERFGGCGSVLNI 135


>gi|326328640|ref|ZP_08194980.1| cytidine and deoxycytidylate deaminase family protein
           [Nocardioidaceae bacterium Broad-1]
 gi|325953601|gb|EGD45601.1| cytidine and deoxycytidylate deaminase family protein
           [Nocardioidaceae bacterium Broad-1]
          Length = 165

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 56/157 (35%), Gaps = 23/157 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP----HA 55
           M  ++     M AAL   R  +        +  ++V   G VIGRG            HA
Sbjct: 1   MTPANRWEAPMRAALEEGRAALATGDV--PIGAVVVDPSGAVIGRGRNVREAEADPTGHA 58

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           EV AL EA +        G T  VTLEPC        CA   +   + R+V    D    
Sbjct: 59  EVVALREAAKARGEWRLEGCTLVVTLEPC------TMCAGAAVLARVERIVFGAFDDKAG 112

Query: 111 VSGRGLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
             G          L+ +  +V  ++  E +  L  + 
Sbjct: 113 AVGSLWDVVRDRRLNHRPEVVAGLLAEEQRALLEDFF 149


>gi|297847068|ref|XP_002891415.1| EMB2191 [Arabidopsis lyrata subsp. lyrata]
 gi|297337257|gb|EFH67674.1| EMB2191 [Arabidopsis lyrata subsp. lyrata]
          Length = 192

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 26/125 (20%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE---- 61
           +M  AL  ++    L +    V C++++DG VI  G            HAE++A++    
Sbjct: 15  YMGFALHQAKLA--LEALEVPVGCVLLEDGKVIASGRNRTNETRNATRHAEMEAIDQLVG 72

Query: 62  ----------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
                     +  E+      YVT EPC        CA  +   GI+ V     +     
Sbjct: 73  QWQEDGLSPSQVAEKFSKCILYVTCEPCIM------CASALSFLGIKEVYYGCPNDKFGG 126

Query: 112 SGRGL 116
            G  L
Sbjct: 127 CGSIL 131


>gi|294781966|ref|ZP_06747298.1| deoxycytidylate deaminase [Fusobacterium sp. 1_1_41FAA]
 gi|294481777|gb|EFG29546.1| deoxycytidylate deaminase [Fusobacterium sp. 1_1_41FAA]
          Length = 160

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 52/146 (35%), Gaps = 33/146 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +D+ FM  AL  S         N  V   IV  D  ++G G                  
Sbjct: 7   DWDSYFMGIALLSSMRSK---DPNTQVGACIVNEDKRIVGVGYNGLPKGCEDTDFPWERE 63

Query: 47  -----TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                T Y    HAE+ A+  + +  +    YV L PC+       C++ II+ GI+ +V
Sbjct: 64  GDFLETKYPYVCHAELNAILNSIKSLKDCIIYVALFPCNE------CSKAIIQSGIKEIV 117

Query: 102 VCVDDPD-VRVSGRGLQWLSQKGIIV 126
              D  D    +    + L   G+  
Sbjct: 118 YLSDKYDGTDTNRASKKMLDSAGVKY 143


>gi|296828108|ref|XP_002851276.1| deoxycytidylate deaminase [Arthroderma otae CBS 113480]
 gi|238838830|gb|EEQ28492.1| deoxycytidylate deaminase [Arthroderma otae CBS 113480]
          Length = 349

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 44/149 (29%), Gaps = 40/149 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
           ++D  FM  A   +            V C+IVKD  V+  G                   
Sbjct: 185 AWDQYFMQLA-SLAAQRSNCMKR--RVGCVIVKDNRVMSTGYNGTPRKMKNCNEGGCPRC 241

Query: 48  --AYGGC--------PHAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                G          HAE  AL EAG +    G+  Y     C        C+  I + 
Sbjct: 242 NLGQAGGTVLSTCLCMHAEENALLEAGRQRIGEGSILYCN-TSCPCL----TCSVKIAQL 296

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           GI  VV         +       L + G+
Sbjct: 297 GISEVVYSQGY---HMDSDSAAVLKEAGV 322


>gi|126331283|ref|XP_001370213.1| PREDICTED: similar to Dctd protein [Monodelphis domestica]
          Length = 345

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 51/146 (34%), Gaps = 35/146 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        N  V   IV  +  ++G G                  
Sbjct: 182 EWPEYFMAVAFLSAQRSK---DPNSQVGACIVNAENKIVGIGYNGMPNGCSDDLLPWSRT 238

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G T YV L PC+       CA+ II+ GI+ 
Sbjct: 239 AEKKLDTKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNE------CAKLIIQAGIKE 292

Query: 100 VVVCVDDPDVRVSGRGLQWLSQ-KGI 124
           V+   D           + +    GI
Sbjct: 293 VIFMSDKYHDNDETTAARLMFDLAGI 318


>gi|288924860|ref|ZP_06418797.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
           buccae D17]
 gi|315607887|ref|ZP_07882880.1| competence protein ComEB [Prevotella buccae ATCC 33574]
 gi|288338647|gb|EFC76996.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
           buccae D17]
 gi|315250356|gb|EFU30352.1| competence protein ComEB [Prevotella buccae ATCC 33574]
          Length = 148

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 52/147 (35%), Gaps = 38/147 (25%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
            D R++  A     W          V  L+VKD ++I  G     G P            
Sbjct: 11  LDLRYLRMAC---IWSENSYCERRKVGALVVKDKMIISDGY---NGTPSGFENVCEDENH 64

Query: 54  -------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A   L  +   + G+T YVT  PC        CA+ II+ GI+RVV  
Sbjct: 65  ITKPYVLHAEANAITKLARSSNNSDGSTLYVTASPCIE------CAKLIIQAGIKRVVYG 118

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMM 130
                      G+  L +  I V  + 
Sbjct: 119 EKYRL----EDGINLLKRANIEVIYLN 141


>gi|161784292|sp|Q5RIV4|ADAT2_DANRE RecName: Full=tRNA-specific adenosine deaminase 2; AltName:
           Full=Deaminase domain-containing protein 1; AltName:
           Full=tRNA-specific adenosine-34 deaminase subunit ADAT2
          Length = 214

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 51/163 (31%), Gaps = 30/163 (18%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL----- 60
           +M+ A   +     L +    V CL+V +  +IG+G            HAE+ AL     
Sbjct: 24  WMAKAFDMA--VEALENGEVPVGCLMVYNNEIIGKGRNEVNETKNATRHAEMVALDQVLD 81

Query: 61  ------EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
                 ++  E       YVT+EPC        CA  +    I  VV    +      G 
Sbjct: 82  WCRLREKDCKEVCEQTVLYVTVEPCIM------CAAALRLLRIPFVVYGCKNERFGGCGS 135

Query: 115 GL----QWLSQKGIIVDRM---MESEGKIFLHAYLTRQVEKRS 150
            L      L   G     +      E    L  +  ++     
Sbjct: 136 VLDVSSDHLPHTGTSFKCIAGYRAEEAVEMLKTFYKQENPNAP 178


>gi|297622621|ref|YP_003704055.1| CMP/dCMP deaminase zinc-binding protein [Truepera radiovictrix DSM
           17093]
 gi|297163801|gb|ADI13512.1| CMP/dCMP deaminase zinc-binding protein [Truepera radiovictrix DSM
           17093]
          Length = 153

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 21/106 (19%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
             +M  A   +               ++V+ G ++               HAE+  +  A
Sbjct: 13  EAWMRLAAEVAERGQT------MFGAVLVRGGALLAEAANTVAKDRDPSAHAELSLIRRA 66

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                  +  G T Y T+EPC      P CA   +  G+  VV   
Sbjct: 67  CRELVTTDLDGCTLYTTVEPC------PMCAAACVWSGVSGVVFGA 106


>gi|311069161|ref|YP_003974084.1| hypothetical protein BATR1942_11110 [Bacillus atrophaeus 1942]
 gi|310869678|gb|ADP33153.1| hypothetical protein BATR1942_11110 [Bacillus atrophaeus 1942]
          Length = 189

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 57/162 (35%), Gaps = 34/162 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------ 53
           M   S++  FM+ +   +      T    SV   IV+D  +I  G      G        
Sbjct: 1   MERISWNQYFMAQSHLLALRS---TCPRLSVGATIVRDKRMIAGGYNGSIAGGVHCADEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A+ +    G    GA  YVT  PC        C + II+ GI+
Sbjct: 58  CFLIDDHCARTIHAEMNAILQCSKFGVPTEGAEIYVTHYPCIQ------CCKSIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
            V    D      +    +   Q G+ V+++   E  I L  
Sbjct: 112 TVYFAEDYKTHPYAK---ELFEQAGVKVEQVELEEMIIDLKN 150


>gi|262067377|ref|ZP_06026989.1| putative deoxycytidylate deaminase [Fusobacterium periodonticum
           ATCC 33693]
 gi|291378940|gb|EFE86458.1| putative deoxycytidylate deaminase [Fusobacterium periodonticum
           ATCC 33693]
          Length = 160

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 52/146 (35%), Gaps = 33/146 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +D+ FM  AL  S         N  V   IV  D  ++G G                  
Sbjct: 7   DWDSYFMGIALLSSMRSK---DPNTQVGACIVNEDKRIVGVGYNGLPKGCEDTDFPWERE 63

Query: 47  -----TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                T Y    HAE+ A+  + +  +    YV L PC+       C++ II+ GI+ +V
Sbjct: 64  GDFLETKYPYVCHAELNAILNSIKSLKDCVIYVALFPCNE------CSKAIIQSGIKEIV 117

Query: 102 VCVDDPD-VRVSGRGLQWLSQKGIIV 126
              D  D    +    + L   G+  
Sbjct: 118 YLSDKYDGTDANRASKKMLDSAGVKY 143


>gi|224541417|ref|ZP_03681956.1| hypothetical protein CATMIT_00579 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525663|gb|EEF94768.1| hypothetical protein CATMIT_00579 [Catenibacterium mitsuokai DSM
           15897]
          Length = 159

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 57/162 (35%), Gaps = 34/162 (20%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
           ++D  FM  A   +         N  V   IV  D  ++G G                  
Sbjct: 7   TWDQYFMGVAKLSAYRSK---DPNTQVGACIVNNDNRIVGVGYNGLPRGCEDDKFPWSVR 63

Query: 47  ------TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                 T Y    HAE+ A+  + ++ +    YV+L PC        C + II+ GI+ +
Sbjct: 64  EGALYDTKYPYVVHAELNAILNSTQKLQDCRIYVSLFPCHE------CTKAIIQSGIKEI 117

Query: 101 VVCVDDPDVRVSGRGLQ-WLSQKGIIVDRMMESEGKIFLHAY 141
           V   +      S R  +  L   G+   ++   E +I    +
Sbjct: 118 VYEDEKYKGSESDRAAKRMLDIAGVSYRKVPAFEIEIKKENH 159


>gi|68537118|ref|YP_251823.1| putative cytosine/adenosine deaminase [Corynebacterium jeikeium
           K411]
 gi|68264717|emb|CAI38205.1| putative cytosine/adenosine deaminase [Corynebacterium jeikeium
           K411]
          Length = 142

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 52/149 (34%), Gaps = 24/149 (16%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----CPHAEVQALEEA-- 63
           M  AL  +       + +  V  +I+  DG  +GRGV           HAE+ A+ EA  
Sbjct: 1   MRRALEIAAE---TPAGDVPVGAVILGPDGRELGRGVNRREADNDPTAHAEILAIREAVQ 57

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                      T  VTLEPC+       CA  ++   I  ++    +P     G      
Sbjct: 58  ELGDAWRLEDCTLVVTLEPCAM------CAGALVGARIGSIIFGAYEPRTGACGSVWDVP 111

Query: 120 SQK----GIIVDRMMESEGKIFLHAYLTR 144
            +       +   ++  E +  L  +  R
Sbjct: 112 RESPLHWAEVRGGVLAGECEELLRQFFAR 140


>gi|89100804|ref|ZP_01173656.1| ComEB [Bacillus sp. NRRL B-14911]
 gi|89084450|gb|EAR63599.1| ComEB [Bacillus sp. NRRL B-14911]
          Length = 195

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 68/197 (34%), Gaps = 34/197 (17%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
           S+D  FM+ +   +      T T  +V   IV+D  +I  G      G            
Sbjct: 6   SWDQYFMAQSHLLALRS---TCTRLAVGATIVRDKRIIAGGYNGSIAGGDHCIDHGCYVI 62

Query: 54  --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE+ ++ +    G    GA  YVT  PC        C + II+ GI  V  
Sbjct: 63  DNHCVRTIHAEMNSILQCAKFGVPTAGADIYVTHFPCLQ------CCKAIIQAGIATVYY 116

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
                +   +   ++   Q G+ V+++M  E  +  +     +  K     +K   +   
Sbjct: 117 AEAYKNHPYA---IELFEQAGVRVEQVMHKEISLEFNRAEKAEYIKNLLEEMKQNGTDHE 173

Query: 163 MIGMAGCGSVPITGFIS 179
            I      +  + G  +
Sbjct: 174 RIDKLQAEAGELFGTGA 190


>gi|289208495|ref|YP_003460561.1| CMP/dCMP deaminase zinc-binding protein [Thioalkalivibrio sp.
           K90mix]
 gi|288944126|gb|ADC71825.1| CMP/dCMP deaminase zinc-binding protein [Thioalkalivibrio sp.
           K90mix]
          Length = 175

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 18/124 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG----CPHAEVQALEE 62
           A +M  AL  +     +      V  ++V  +G  +     A  G      HAE++ L  
Sbjct: 28  AYWMDVALAQAERAAEV--GEVPVGAVLVDAEGYCLAVAHNAPIGEHDATAHAEIRVLRR 85

Query: 63  AGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AG+        G T YVTLEPCS       CA  +I   + R+V    DP    +G  + 
Sbjct: 86  AGKRCSNYRLTGTTLYVTLEPCSM------CAGAMIHARVERLVFAASDPRTGAAGGAID 139

Query: 118 WLSQ 121
            L  
Sbjct: 140 LLHH 143


>gi|320037881|gb|EFW19817.1| deoxycytidylate deaminase [Coccidioides posadasii str. Silveira]
          Length = 352

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 55/174 (31%), Gaps = 41/174 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-- 53
           S+D  FM  A   +            V C++VKD  V+  G             GGCP  
Sbjct: 187 SWDEYFMQLA-SLAAQRSNCMKR--RVGCVLVKDRRVMSTGYNGTARNTRNCNQGGCPRC 243

Query: 54  ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                           HAE  AL EAG E    G   Y    PC        C+  I + 
Sbjct: 244 NLVQGTAQALSTCLCLHAEENALLEAGRERIGEGCILYCNTCPCL------TCSVKIAQL 297

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           GI  VV         +       L + G+ + +       +    ++ +Q   +
Sbjct: 298 GISEVVYSQAY---DMDRETAAILEEAGVKLRQFSPPCNGLIDIRFMFKQSCIQ 348


>gi|260593324|ref|ZP_05858782.1| guanine deaminase [Prevotella veroralis F0319]
 gi|260534736|gb|EEX17353.1| guanine deaminase [Prevotella veroralis F0319]
          Length = 155

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 37/115 (32%), Gaps = 25/115 (21%)

Query: 8   ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
              M  A+  S    R   G          +I + G +I  G            HAEV A
Sbjct: 4   EELMRKAIELSIESVRNGGG------PFGAIIARKGEIIAEGSNGVTIYNDPTAHAEVTA 57

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           + +A E     +  G   Y + EPC      P C   I    + ++    D  D 
Sbjct: 58  IRKACEKLGTFDLTGCEIYTSCEPC------PMCLGAIYWAHLDKIYYANDRKDA 106


>gi|126641614|ref|YP_001084598.1| putative deaminase [Acinetobacter baumannii ATCC 17978]
          Length = 135

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 16/93 (17%)

Query: 39  GIVIGRGVTAYGG----CPHAEVQALEEAGEEAR------GATAYVTLEPCSHYGRSPPC 88
             +IG G  A  G      HAE+QA+  A E  +       AT YVTLEPC        C
Sbjct: 4   NKLIGAGFNAPIGLSDPTAHAEIQAIRAACESLKNYRLPEDATLYVTLEPC------TMC 57

Query: 89  AQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
              ++   I+ VV    +P         Q L  
Sbjct: 58  VGALVHARIKHVVFGTTEPKAGSLVSARQLLEN 90


>gi|257076159|ref|ZP_05570520.1| deaminase [Ferroplasma acidarmanus fer1]
          Length = 172

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 43/134 (32%), Gaps = 39/134 (29%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D  FM  A   +      T     V  +IV+D  V+  G                   
Sbjct: 9   SWDEYFMRMA-YLAASRSNCTRR--KVGAVIVRDNNVLATGYNGPPSHTVNCDIVGCIRD 65

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G   +G+  YVT  PC        C++ I+ 
Sbjct: 66  ELNVPSGERHELCRGLHAEQNAIIQAAVNGSSIKGSKIYVTTHPC------VVCSKMIMN 119

Query: 95  CGIRRVVVCVDDPD 108
             I  ++     PD
Sbjct: 120 SSIEEIIFAEGYPD 133


>gi|85057886|ref|YP_456802.1| cytosine deaminase [Aster yellows witches'-broom phytoplasma AYWB]
 gi|42632638|gb|AAS22250.1| cytosine deaminase [Aster yellows witches'-broom phytoplasma]
 gi|84789991|gb|ABC65723.1| cytosine deaminase [Aster yellows witches'-broom phytoplasma AYWB]
          Length = 161

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 40/116 (34%), Gaps = 17/116 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEAG 64
            FM  AL+ ++           +  + V +  +I R             HAE  AL +AG
Sbjct: 10  FFMKEALKEAQKAYL--KEEVPIGAIAVLNQKIIARAHNNRNTKKLFFGHAEFLALIKAG 67

Query: 65  EE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           ++         + YVTLEPC        C   II+ GI+ +               
Sbjct: 68  KKINSRFLNDVSLYVTLEPCLM------CTGAIIQAGIKNLYYGTSIEKSYSFNDM 117


>gi|169774581|ref|XP_001821758.1| DRAP deaminase [Aspergillus oryzae RIB40]
 gi|83769621|dbj|BAE59756.1| unnamed protein product [Aspergillus oryzae]
          Length = 222

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 55/165 (33%), Gaps = 35/165 (21%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK---------DGIVIGRGVTAY-GGC 52
           + S  A+++   L  +        TN  V  ++V          D  ++  G T    G 
Sbjct: 1   MQSPHAKYLRECLSLAEKSPPR-PTNFRVGAILVSRKEGDYKTEDDRIVSTGYTMELAGN 59

Query: 53  PHAEVQALEEA----------------GEEARGATAYVTLEPCS-HYGRSPPCAQFI--- 92
            HAE   L                    E  R    YVT+EPC      + PC Q I   
Sbjct: 60  THAEQCCLSNYAAVHSVPEDRVWEVLPSEPDRKLVMYVTMEPCGKRLSGNLPCVQRIIRT 119

Query: 93  ---IECGIRRVVVCVDDPDVRVSGRG-LQWLSQKGIIVDRMMESE 133
                 GI+++   V +P   V G    Q L+  GI    +   E
Sbjct: 120 RQGDRKGIQKIYFGVKEPGTFVGGSEGCQMLTAAGIDWQVVNGLE 164


>gi|328948242|ref|YP_004365579.1| CMP/dCMP deaminase zinc-binding protein [Treponema succinifaciens
           DSM 2489]
 gi|328448566|gb|AEB14282.1| CMP/dCMP deaminase zinc-binding protein [Treponema succinifaciens
           DSM 2489]
          Length = 165

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 55/159 (34%), Gaps = 43/159 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG------------- 51
           ++D  FM  A   ++     T       C+I KD  ++  G                   
Sbjct: 12  TWDEYFMEVARTIAKRA---TCDRGRSGCVIAKDNQILVTGYVGSPAGLAHCDEVGHLMR 68

Query: 52  ---------------CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFII 93
                            HAE  A+ +A   G    GAT Y  + PC        CA  II
Sbjct: 69  KMIHADGSVTQHCVRTVHAEQNAICQAAKRGISIDGATVYCKMTPC------RTCAMLII 122

Query: 94  ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
            CGI+RVV      D       ++  ++ GI ++ + +S
Sbjct: 123 NCGIKRVVCEKHYHD---EEDSMKMFAEAGIKIEHLEDS 158


>gi|260909908|ref|ZP_05916596.1| guanine deaminase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260635953|gb|EEX53955.1| guanine deaminase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 155

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 17/108 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEE 66
           M  A+  S   V           +I ++G ++          +    HAEV A+  A  +
Sbjct: 7   MRRAIALSEESVKNGGG--PFGAVIARNGEIVAEAANRVTLDHDPTAHAEVSAIRLASRK 64

Query: 67  -----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
                  G   Y + EPC      P C   I    +  +    +  D 
Sbjct: 65  LGTFNLSGCDIYTSCEPC------PMCLGAIYWAHLDNIYYANNREDA 106


>gi|145603432|ref|XP_001404560.1| hypothetical protein MGG_13228 [Magnaporthe oryzae 70-15]
 gi|145011664|gb|EDJ96320.1| hypothetical protein MGG_13228 [Magnaporthe oryzae 70-15]
          Length = 180

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 52/161 (32%), Gaps = 34/161 (21%)

Query: 8   ARFMSAALRFSRWHVGLTSTNP---SVACLIVKD--GIVIGRG--------VTAYGGCPH 54
             FM  A+  +R        +P    V  ++V +  G V+ RG             G  H
Sbjct: 16  EEFMKLAIEEARRSR----PDPGKFCVGAVLVNEDTGDVLSRGYYLEYPEDYNGSNGSVH 71

Query: 55  AEVQALEEAGE------------EARGATAYVTLEPCS-HYGRSPPCAQFIIECGIR--R 99
           AE   L +A E                   Y T+EPC+       PC + ++E       
Sbjct: 72  AERVCLIKAAELYGVSETELGAALPPNCAIYTTMEPCNARPSMDKPCVERLLEVKQAVRT 131

Query: 100 VVVCVDDP--DVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138
           V V +  P         G + L + G I       E +  L
Sbjct: 132 VYVGIRMPGTSTDAEEPGRRKLEESGGIRVLYPLPEWETEL 172


>gi|256421680|ref|YP_003122333.1| CMP/dCMP deaminase zinc-binding [Chitinophaga pinensis DSM 2588]
 gi|256036588|gb|ACU60132.1| CMP/dCMP deaminase zinc-binding [Chitinophaga pinensis DSM 2588]
          Length = 131

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 15/116 (12%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA--- 63
           M+   + +         +P V  +IVKDGI+IG G            HAEV A+ +A   
Sbjct: 1   MARCYQLADIAA-KEGESP-VGSVIVKDGIIIGEGSEKSKQQKDITRHAEVVAILDALRN 58

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
            +   G+  Y  +EPC        C+  I    I  VV      ++  + +    L
Sbjct: 59  TDSLAGSVLYTNVEPCL------LCSYVIRHYKIAEVVFARHSGELGGTHQPFDLL 108


>gi|328675327|gb|AEB28002.1| tRNA-specific adenosine-34 deaminase [Francisella cf. novicida
           3523]
          Length = 153

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 50/155 (32%), Gaps = 23/155 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEV 57
             S+ D  FM  A   +       +    +  ++V+D  +I        T      HAE+
Sbjct: 3   NYSNEDIFFMQKAYEQALLA--HQAGEVPIGAVLVRDSQIIAENFNQTITLNDPTAHAEI 60

Query: 58  QALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
             L  A              YVTLEPC        C   +I+  +  +V   DD  V   
Sbjct: 61  LVLRSAALEVGNYRLINTKLYVTLEPCIM------CLGGLIQARVSELVYACDDSRVGAF 114

Query: 113 GRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
            R  +    K I     +   +M  E    L  + 
Sbjct: 115 SRE-KLHQNKNINHNLGVTAGVMADECAKLLKDFF 148


>gi|167922718|ref|ZP_02509809.1| riboflavin biosynthesis protein [Burkholderia pseudomallei BCC215]
          Length = 297

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 87/275 (31%), Gaps = 40/275 (14%)

Query: 98  RRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKI 156
            RVV+   DP  +V+GRG   L+  GI+V+  ++ ++ +     + +R    R      +
Sbjct: 1   ARVVIAARDPFEQVAGRGAARLADAGIVVEQGLLAAQARELNIGFFSRIERGRPWTRATL 60

Query: 157 AVSQDNMIGMAGCGSVPITGF--ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214
            +  D    +       +      +++ +   RA+S  +L       A D     R  G 
Sbjct: 61  GLPIDAPPALDSAELAELDAALSEARDDLRHWRARSSLVL-----ERAPD---AGRAVGC 112

Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLA-PVIIVTENDDPVLALAF-RKKNINIIYCDC 272
              +P  ++          +          P + +  +D+   A              D 
Sbjct: 113 NAAAPRYVVSARDCAALGAASAACAPADGVPTLALHRDDNSASACEDAHGIGHRARRVDR 172

Query: 273 RD----------------------LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
            D                      L      L  +GV  LLV+   A+  +   S L D 
Sbjct: 173 VDHADARPAGAPSASASDTDAGLPLPDAFARLARQGVNELLVDADLALCDALFGSDLADE 232

Query: 311 IILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
           ++LY            +P+    L      V R +
Sbjct: 233 LLLYAHP-----ARRDAPVSASRLAAAIDDVARRW 262


>gi|296129579|ref|YP_003636829.1| bifunctional deaminase-reductase domain protein [Cellulomonas
           flavigena DSM 20109]
 gi|296021394|gb|ADG74630.1| bifunctional deaminase-reductase domain protein [Cellulomonas
           flavigena DSM 20109]
          Length = 262

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 68/226 (30%), Gaps = 36/226 (15%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
             +   +  S D         S  +     +    +LRA +D +LVG GTV A       
Sbjct: 37  PLVRANMVASIDGAATGPDGRSGSLGTAADRRVFAVLRALADVVLVGAGTVRA------- 89

Query: 210 RLNGLQEHSPMR------------------IILDPHFKLSLDSKIIKTALLAPVIIVTEN 251
                    P+                    ++     +  D   +    + P+++    
Sbjct: 90  ---EGYRELPVAAGLRAARAAAGFDARIELAVVTRSGDVPGD---LAPDGVRPLVVTGRA 143

Query: 252 DDPVLALAFRKKNI----NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
                        +         D  DL+  +  LV RG+  +L EGG  +    + + +
Sbjct: 144 GAARARATVGTDRVLEVPQDDDPDSPDLRVAVDALVTRGLPHVLAEGGPRLLADLLAADV 203

Query: 308 VDSIILYRSQIVI-GEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           VD + L  S +++ G+   P+        +            D  L
Sbjct: 204 VDELHLTTSALLLAGDARRPATGVPLAAPRGARLRHLLRATDDTLL 249


>gi|189468213|ref|ZP_03016998.1| hypothetical protein BACINT_04609 [Bacteroides intestinalis DSM
           17393]
 gi|189436477|gb|EDV05462.1| hypothetical protein BACINT_04609 [Bacteroides intestinalis DSM
           17393]
          Length = 139

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 51/141 (36%), Gaps = 17/141 (12%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA--- 63
           M  AL  +R           V  ++V    +I R      T      HAE+QA+  A   
Sbjct: 1   MKQALVEARKAAER--GEVPVGAIVVCKERIIARAHNLTETLTDVTAHAEMQAITAAAST 58

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
             G+     T YVT+EPC        CA  I    + R+V   +D          Q L  
Sbjct: 59  LGGKYLNECTLYVTVEPC------VMCAGAIAWAQMGRLVFGAEDEKRGYQRYAPQALHP 112

Query: 122 KGIIVDRMMESEGKIFLHAYL 142
           K ++V  ++  +    +  + 
Sbjct: 113 KTVVVKGILADDCAALMKDFF 133


>gi|300711978|ref|YP_003737792.1| cytosine deaminase [Halalkalicoccus jeotgali B3]
 gi|299125661|gb|ADJ16000.1| cytosine deaminase [Halalkalicoccus jeotgali B3]
          Length = 280

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 54/151 (35%), Gaps = 21/151 (13%)

Query: 1   MPVSS---FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGR----GVTAYGGCP 53
           MP  S    + RFM  A+  +R        NP    ++V DG ++        T      
Sbjct: 129 MPQPSSRMNEERFMRRAIELAREAAER-GDNP-FGSVLVHDGEIVMEDSNRVATEDDIRR 186

Query: 54  HAE----VQALEEAGEEARG-ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           H E      A+ E   E R   T Y + EPC      P CA  ++  G  RVV     P+
Sbjct: 187 HPELTLARLAVRELDPEIRSETTMYTSTEPC------PMCAGGMVYAGFDRVVYATSGPE 240

Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
           +         +    I +D + E EG     
Sbjct: 241 IAAFTGHDPGVRAAEI-LDGVTEVEGPFCHE 270


>gi|73979520|ref|XP_849027.1| PREDICTED: similar to Deoxycytidylate deaminase (dCMP deaminase)
           isoform 1 [Canis familiaris]
          Length = 178

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 51/148 (34%), Gaps = 35/148 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        N  V   IV  +  ++G G                  
Sbjct: 14  EWPEYFMAVAFLAAQRSK---DPNSQVGACIVNAENKIVGIGYNGMPNGCSDDHLPWERT 70

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G T YV L PC+       CA+ II+ GI+ 
Sbjct: 71  AASKLDTKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNE------CAKLIIQAGIKE 124

Query: 100 VVVCVDDPDVRVSGRGLQWLSQ-KGIIV 126
           V+   D           + L    G+  
Sbjct: 125 VIFMSDKYHDSDEMTAARLLFDMAGVAF 152


>gi|333030069|ref|ZP_08458130.1| CMP/dCMP deaminase zinc-binding [Bacteroides coprosuis DSM 18011]
 gi|332740666|gb|EGJ71148.1| CMP/dCMP deaminase zinc-binding [Bacteroides coprosuis DSM 18011]
          Length = 146

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 54/147 (36%), Gaps = 32/147 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----------------TA 48
             D R++  A   S W          V  LIVKD ++I  G                 T 
Sbjct: 13  ELDTRYIRMA---SIWSENSYCIRRKVGALIVKDKMIISDGYNGTPSGFENICEDDNNTT 69

Query: 49  YGGCPHAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE  A+ +   +   + GAT YVT  PC        CA+ II+ GI+RVV    
Sbjct: 70  KPYVLHAEANAITKIACSNNSSDGATMYVTAAPCIE------CAKLIIQAGIKRVVYSES 123

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMES 132
                    G+Q L +  I V  +   
Sbjct: 124 YRL----DDGIQLLKRANIEVVFIDHK 146


>gi|224122016|ref|XP_002318729.1| predicted protein [Populus trichocarpa]
 gi|222859402|gb|EEE96949.1| predicted protein [Populus trichocarpa]
          Length = 225

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 57/148 (38%), Gaps = 37/148 (25%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA--------------- 48
           S+D  FM+ AL  +         N  V   +V K+GI++G G                  
Sbjct: 68  SWDDYFMAIALLSAERSK---DPNRQVGACLVSKNGIILGIGYNGFPRGCSDDDLPWAKK 124

Query: 49  -YGGCP---------HAEVQALEEAGEEAR-GATAYVTLEPCSHYGRSPPCAQFIIECGI 97
              G P         HAEV A+      +  G   YVT+ PC+       CA+ II  G+
Sbjct: 125 SKSGDPLETKYPYVCHAEVNAILNTNHASAVGQRLYVTMFPCNE------CAKIIILSGV 178

Query: 98  RRVVVCVDDPDVRVS-GRGLQWLSQKGI 124
             V+  ++  +  ++     + LS  GI
Sbjct: 179 SEVIYFIEKNNSDMAYIASHKLLSMAGI 206


>gi|220918865|ref|YP_002494169.1| CMP/dCMP deaminase zinc-binding [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219956719|gb|ACL67103.1| CMP/dCMP deaminase zinc-binding [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 154

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 46/113 (40%), Gaps = 17/113 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA--- 63
           M  AL  +R           V  + + +G V+GRG  A         HAE+ A++EA   
Sbjct: 1   MQEALGLAREAAAR--GEVPVGAVALFEGRVVGRGANAREAARDPTAHAELLAIQEAART 58

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
                  G T  VTLEPC+       CA  ++   I R+V    DP    +G 
Sbjct: 59  LGRWRLTGVTVVVTLEPCAM------CAGAMVLARIDRLVYGASDPKAGCTGS 105


>gi|34541467|ref|NP_905946.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
           gingivalis W83]
 gi|188995653|ref|YP_001929905.1| putative deoxycytidylate deaminase [Porphyromonas gingivalis ATCC
           33277]
 gi|34397784|gb|AAQ66845.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
           gingivalis W83]
 gi|188595333|dbj|BAG34308.1| putative deoxycytidylate deaminase [Porphyromonas gingivalis ATCC
           33277]
          Length = 151

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 58/151 (38%), Gaps = 32/151 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC------------ 52
             D R++  A  ++            V  LIVK+ ++I  G                   
Sbjct: 14  ELDKRYLRMARIWAENSYCERRK---VGALIVKEQMIISDGYNGTPAGFENICEDENNVT 70

Query: 53  ----PHAEVQALEE-AG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE  A+ + AG    + GAT Y+T  PC        CA+ II+  I+RVV    
Sbjct: 71  KPYVLHAEANAITKVAGSTNNSSGATIYITAAPCIE------CAKLIIQSKIKRVVYSEK 124

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESEGKI 136
                    G + L + GI+VD +  S+ + 
Sbjct: 125 YRL----DEGCRLLERAGIVVDFIDISDIQE 151


>gi|75908250|ref|YP_322546.1| cytidine/deoxycytidylate deaminase [Anabaena variabilis ATCC 29413]
 gi|75701975|gb|ABA21651.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Anabaena
           variabilis ATCC 29413]
          Length = 141

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 21/116 (18%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
             FM  A+  ++              +IVKD  V+       G       HAE+  +   
Sbjct: 4   EYFMRLAIAEAKKGDAPY------GAVIVKDDQVVAFAHNTVGRDNDPSAHAEINVVRRL 57

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
             +       G + Y T EPC      P CA   +  GI  ++      D+ ++ +
Sbjct: 58  TAQLQSFSLEGYSIYTTGEPC------PMCAAACVWSGIAEIIYGASIQDLILANQ 107


>gi|56707349|ref|YP_169245.1| zinc-binding domain-containing protein [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110669819|ref|YP_666376.1| zinc-binding domain-containing protein [Francisella tularensis
           subsp. tularensis FSC198]
 gi|56603841|emb|CAG44817.1| Zinc-binding domain protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320152|emb|CAL08200.1| Zinc-binding domain protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|282158481|gb|ADA77872.1| Zinc-binding domain protein [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 153

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 52/155 (33%), Gaps = 23/155 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
             S  D  FM  A + +          P +  ++V+D  +I +      G      HAE+
Sbjct: 3   NYSDQDIFFMQKAYQQALLA-YQAGEVP-IGAVLVRDDQIIVQNFNQTIGLNDPTAHAEI 60

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
             L  A  +           YVTLEPC        C   +I+  +  +V   DD  V   
Sbjct: 61  LVLRSAALKLGNYRLVNTKLYVTLEPCIM------CLGGLIQARVPELVYACDDSRVGAF 114

Query: 113 GRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
            R  +    K I     +   +M  E    L  + 
Sbjct: 115 SRE-KLHHNKNINHNLGVTAGVMADECSKLLKDFF 148


>gi|289177738|gb|ADC84984.1| tRNA-specific adenosine deaminase [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 204

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 55/155 (35%), Gaps = 23/155 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT--AYGGCP--HAEVQALEE 62
           A  M  AL  +R     ++ +  V  +++   G VIGRG         P  HAE+ A+ E
Sbjct: 57  AEAMGEALAQARMAR--SAGDVPVGAVVLDAHGEVIGRGRNLRERDADPLAHAEIVAMRE 114

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A            T  VTLEPC      P CA   ++  I R+V    D  +   G    
Sbjct: 115 AAAVRGNWNLADCTLVVTLEPC------PMCAGACLQTRIGRIVFGGWDAKLGACGSVWD 168

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVE 147
                 +     +   + E E    L  +   +  
Sbjct: 169 IPRDPHVGHEPEVYGGVCERECTALLAEFFHSRRH 203


>gi|123974614|ref|XP_001313908.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|123974616|ref|XP_001313909.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121895852|gb|EAY01022.1| hypothetical protein TVAG_295560 [Trichomonas vaginalis G3]
 gi|121895853|gb|EAY01023.1| hypothetical protein TVAG_295570 [Trichomonas vaginalis G3]
          Length = 169

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 54/149 (36%), Gaps = 11/149 (7%)

Query: 220 MRIILDPHFKLSLDSKIIK-TALLAPVI-IVTENDDPVLALAFRKKNINIIYCDCR--DL 275
           + I +DP  KL     +       + +I ++T           R K I+ I C     D 
Sbjct: 19  VAIAVDPKGKLGWKENVAHYFGQDSDIIEVLTNQASAQYKNYLRSKGISYIICGDHAIDW 78

Query: 276 KKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS-----PL 329
           K +L+ L     + S+ V+GG  V  S +   LVD +    +  + G     S     P 
Sbjct: 79  KLMLSKLKNTFHLKSIAVQGGGIVNWSLLRVGLVDELSYVVAPTIDGRSTDVSFIRRNPE 138

Query: 330 EEGYLEKNFMCVRRDYFGSD-VCLEYIGK 357
           +       F  +     G + V L Y  K
Sbjct: 139 DTDSPPLEFDLIDVQRVGDNGVWLRYAPK 167


>gi|46203751|ref|ZP_00051027.2| COG0590: Cytosine/adenosine deaminases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 152

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 43/127 (33%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            V  ++V+DG+V+G              HAE+ A+  A      E   G   YVTLEPC 
Sbjct: 22  PVGAVVVRDGVVLGVAGNRPRALSDPTAHAEILAIRAACTALQDERLTGCDLYVTLEPC- 80

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPD---VRVSGRGLQW--LSQKGIIVDRMMESEGK 135
                P CA  I    IRR+     DP    V    R            +       E  
Sbjct: 81  -----PMCAGAISFARIRRLYYAASDPKGGGVEHGPRVFNQPTCHHAPEVYSGFRAGEAA 135

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 136 GLLREFF 142


>gi|296128347|ref|YP_003635597.1| CMP/dCMP deaminase zinc-binding protein [Cellulomonas flavigena DSM
           20109]
 gi|296020162|gb|ADG73398.1| CMP/dCMP deaminase zinc-binding protein [Cellulomonas flavigena DSM
           20109]
          Length = 176

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 57/157 (36%), Gaps = 23/157 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----CPHAEVQ 58
           +  D   M  AL  +R    L S +  V  +++  DG V+GRG            HAEV 
Sbjct: 27  TPADEAAMDLALVEARAA--LDSGDVPVGAVVLGPDGAVVGRGRNVREAVADPTGHAEVV 84

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A+ EA          G T  VTLEPC        CA  +++  + R+V+   D      G
Sbjct: 85  AMREAAATLGRWRLDGCTLVVTLEPCLM------CAGAVLQARVPRLVLGAWDEKAGACG 138

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQ 145
                +       +  +V  +   E    L  +    
Sbjct: 139 SQWDVVRDRRALHRVEVVPGVRAEESATLLRDFFHPH 175


>gi|117924693|ref|YP_865310.1| CMP/dCMP deaminase, zinc-binding [Magnetococcus sp. MC-1]
 gi|117608449|gb|ABK43904.1| CMP/dCMP deaminase, zinc-binding protein [Magnetococcus sp. MC-1]
          Length = 167

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 46/158 (29%), Gaps = 40/158 (25%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT------------- 47
           M   S+D  +M  A + +       S    V  + V+D  ++  G               
Sbjct: 1   MSRPSWDIHWMRVA-KLAAEMSTCASGR-RVGAVFVRDKRLLATGFNGVPSGYPHPTSCA 58

Query: 48  -AYGGCP-----------HAEVQALEEAGE---EARGATAYVTLEPCSHYGRSPPCAQFI 92
               G P           HAE   +  AG    +  G   YVT  PC        C   +
Sbjct: 59  RREAGVPSGQGLGLCVCAHAEANGIANAGRHGIKLEGCRVYVTTHPCG------ACMGAL 112

Query: 93  IECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
              G++ V       D R            GI++  + 
Sbjct: 113 ANIGVKEVFYAEAYDDPRAK----DIADYAGIVLHHIQ 146


>gi|150388180|ref|YP_001318229.1| CMP/dCMP deaminase, zinc-binding [Alkaliphilus metalliredigens
           QYMF]
 gi|149948042|gb|ABR46570.1| CMP/dCMP deaminase, zinc-binding [Alkaliphilus metalliredigens
           QYMF]
          Length = 146

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 57/153 (37%), Gaps = 43/153 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D  FM  A    +     T     V  ++VKD  V+  G                   
Sbjct: 4   SWDQYFMEMA-EVVK--TRSTCMRRQVGAVVVKDKRVLSSGYNGAPSGIEHCEKTGCLRE 60

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G E +G T YVTL+PC        CA+ +I 
Sbjct: 61  QLGVPSGERHELCRGLHAEQNAIIQAAYHGVEIQGTTLYVTLQPC------VLCAKMLIN 114

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            G++R+V     PD        + L++ GI ++
Sbjct: 115 AGVKRLVFKGQYPDDLSE----KMLTEAGIEME 143


>gi|58584428|ref|YP_198001.1| cytosine/adenosine deaminase [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|58418744|gb|AAW70759.1| Cytosine/adenosine deaminase [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
          Length = 143

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 53/143 (37%), Gaps = 17/143 (11%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEAGEEAR- 68
           M  A+  ++      +    +  +IV    +I      +     HAE+  + +A E    
Sbjct: 1   MEFAVEQAKLAK--KNDEIPIGAVIVSGDNIISFAHNISNDPTAHAEMLVIRQACELLST 58

Query: 69  ----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD---VRVSGRGLQWLSQ 121
                A  YVTLEPC      P CAQ I    I+R+     +     +    +  Q+ S 
Sbjct: 59  SVLCNADMYVTLEPC------PMCAQAISFARIKRLYFGAYNSKGGGIENGAKIFQFCSH 112

Query: 122 KGIIVDRMMESEGKIFLHAYLTR 144
              +   ++E+E    L  +  +
Sbjct: 113 VPEVYGGVLETECSFLLKDFFEK 135


>gi|79328917|ref|NP_001031959.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
           thaliana]
 gi|332006386|gb|AED93769.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis
           thaliana]
          Length = 204

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 43/134 (32%), Gaps = 19/134 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
           V   D +F++ A+  +   V      P    +IV +  V+               HAEV 
Sbjct: 45  VHDSDHKFLTQAVEEAYKGVDCGDGGP-FGAVIVHNNEVVASCHNMVLKYTDPTAHAEVT 103

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV---R 110
           A+ EA ++           Y + EPC      P C   I    ++R+V            
Sbjct: 104 AIREACKKLNKIELSECEIYASCEPC------PMCFGAIHLSRLKRLVYGAKAEAAIAIG 157

Query: 111 VSGRGLQWLSQKGI 124
                   L   G+
Sbjct: 158 FDDFIADALRGTGV 171


>gi|297158942|gb|ADI08654.1| riboflavin biosynthesis protein RibD [Streptomyces bingchenggensis
           BCW-1]
          Length = 72

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 7/72 (9%)

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF---- 346
            +EGG  +A SF+++ LVD +I Y +  ++G G   S L+ G +E     +R +      
Sbjct: 2   FLEGGPTLAASFVSAGLVDRVIAYIAPALLGRG--KSALQGGTIETMEDILRCELLDVAR 59

Query: 347 -GSDVCLEYIGK 357
            G D+ L    +
Sbjct: 60  SGPDIRLIARPR 71


>gi|332295432|ref|YP_004437355.1| dCMP deaminase [Thermodesulfobium narugense DSM 14796]
 gi|332178535|gb|AEE14224.1| dCMP deaminase [Thermodesulfobium narugense DSM 14796]
          Length = 152

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 53/152 (34%), Gaps = 43/152 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG------------- 51
            +D+ FM  A   +      T     V  +IVK+  ++  G                   
Sbjct: 4   DWDSYFMKIAFLVATRS---TCIRRKVGAVIVKEKRILSTGYNGAPSGLLHCLDIGCLRD 60

Query: 52  --------------CPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+      G    G+T YVT +PC        CA+ +I+
Sbjct: 61  KLNIPSGERQELCRGLHAEQNAIIQGAMYGVSLMGSTIYVTNQPCI------TCAKMLIQ 114

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            GI ++V   D PD       L+ L + G+ +
Sbjct: 115 AGIVKIVYQGDYPD----KLALEMLEEAGVEI 142


>gi|91779380|ref|YP_554588.1| putative pyrimidine reductase [Burkholderia xenovorans LB400]
 gi|91692040|gb|ABE35238.1| putative pyrimidine reductase [Burkholderia xenovorans LB400]
          Length = 225

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 7/113 (6%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVI-IVTENDDPVLALAFRKKNINIIYCD--CRDLKKL 278
           I +DP  +++  S    TAL + VI ++TE          +   ++ ++      DL K+
Sbjct: 84  ISIDPQGRVAWKSN---TALKSHVIEVLTEQVADDYLAYLQSIGVSYVFGGKTGIDLDKV 140

Query: 279 LTILV-GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           +  L    GV  L+VEGG+ V+ +F+N+ LVD + +    +V G    PS  E
Sbjct: 141 VQTLARELGVKKLIVEGGSHVSGAFVNAGLVDEVSVLILPLVDGRSEHPSSFE 193


>gi|227509437|ref|ZP_03939486.1| competence protein ComEB [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227191149|gb|EEI71216.1| competence protein ComEB [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 163

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 49/135 (36%), Gaps = 31/135 (22%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
           +D  FM  A+  +      T    SV  +IV+D  +I  G                    
Sbjct: 12  WDQYFMMQAVLLASRS---TCERLSVGAVIVRDKRIIAGGYNGSVAGDDHCIDVGCYLVD 68

Query: 54  -------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE+ A+ +    GE    A  YVT  PC        C + +++ GI+R+   
Sbjct: 69  GHCVRTIHAEMNAILQCAKFGESTDNAEIYVTDFPCLQ------CTKMLLQAGIKRINYL 122

Query: 104 VDDPDVRVSGRGLQW 118
            +  +   + + ++ 
Sbjct: 123 RNYHNDEYAQKLIRL 137


>gi|169642534|gb|AAI60619.1| Adat2 protein [Danio rerio]
          Length = 238

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 52/165 (31%), Gaps = 27/165 (16%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL----- 60
           +M+ A   +       +    V CL+V +  +IG+G            HAE+ AL     
Sbjct: 24  WMAKAFDMA--VEAFENGEVPVGCLMVYNNEIIGKGRNEVNETKNATRHAEMVALDQVLD 81

Query: 61  ------EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
                 ++  E       YVT+EPC        CA  +    I  VV    +      G 
Sbjct: 82  WCRLREKDCKEVCEQTVLYVTVEPCIM------CAAALRLLRIPFVVYGCKNERFGGCGS 135

Query: 115 GL----QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
            L      L   G     +     +  +    T   ++  +   +
Sbjct: 136 VLDVSSDHLPHTGTSFKCIAGYRAEEAVEMLKTFYKQENPNGQCQ 180


>gi|156841735|ref|XP_001644239.1| hypothetical protein Kpol_1051p30 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114877|gb|EDO16381.1| hypothetical protein Kpol_1051p30 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 317

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 53/146 (36%), Gaps = 37/146 (25%)

Query: 5   SFDARFMSAA-LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG---------GCP- 53
            +D  FM  A L  SR +         V C+IV+D  VI  G              GCP 
Sbjct: 167 DWDTYFMKLATLAASRSNCMKR----RVGCVIVRDRRVIATGYNGTPRHLTNCFNGGCPR 222

Query: 54  ---------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                          HAE  AL EAG +  G  A +  + C        C+  I++ GI+
Sbjct: 223 CNDGNSHTLHTCLCLHAEENALLEAGRDRIGQNAILYCDTCPCL----TCSVKIVQTGIK 278

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGI 124
            VV        R+     + L + G+
Sbjct: 279 EVVYSQSY---RMDEDSFKVLKEGGV 301


>gi|333031276|ref|ZP_08459337.1| Guanine deaminase [Bacteroides coprosuis DSM 18011]
 gi|332741873|gb|EGJ72355.1| Guanine deaminase [Bacteroides coprosuis DSM 18011]
          Length = 155

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 39/116 (33%), Gaps = 25/116 (21%)

Query: 8   ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
              M  A+  S    +   G          +I KDG ++  GV           HAEV A
Sbjct: 4   EELMRKAIALSIENVKRDGG------PFGAVIAKDGEIVATGVNRVTDSCDPTAHAEVSA 57

Query: 60  LEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           +  A E+ +     G   Y + EPC      P C   I    + ++       D +
Sbjct: 58  IRAAAEKLKTFDLSGYEIYSSCEPC------PMCLGAIYWARLDKLYFANTKTDAK 107


>gi|241617471|ref|XP_002406922.1| tRNA-specific adenosine deaminase, putative [Ixodes scapularis]
 gi|215500893|gb|EEC10387.1| tRNA-specific adenosine deaminase, putative [Ixodes scapularis]
          Length = 188

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 54/158 (34%), Gaps = 26/158 (16%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA--- 63
           M A  + +     L +    V C++   G VI RG          C HAE+  +++    
Sbjct: 25  MDACFQLAEEA--LAAGEVPVGCVMFYAGQVIARGRNRVNKTKNACRHAEMDCVDQVLDW 82

Query: 64  --------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
                   GE  RG + +VT+EPC        CA  +    + RVV    +      G  
Sbjct: 83  CAERGLDTGEVFRGVSVFVTVEPCIM------CAAALDSLRVSRVVFGCPNERFGGVGSV 136

Query: 116 LQWLSQKG---IIVDRMMESEGKIFLHAYLTRQVEKRS 150
           L  L   G   ++V  +        L  +   +     
Sbjct: 137 LDVLRGTGGRTVVVAGVRAERAVNLLKEFYMGENPNAP 174


>gi|193076995|gb|ABO11743.2| CMP/dCMP deaminase zinc-binding [Acinetobacter baumannii ATCC
           17978]
          Length = 160

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 39/112 (34%), Gaps = 21/112 (18%)

Query: 8   ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
             F+  A+  +        G          +IVKDG VI  GV           HAE+ A
Sbjct: 5   QEFLRQAIELAYNNIEKG-GR-----PFGAVIVKDGKVIASGVNQILTTNDPTAHAELLA 58

Query: 60  LEEAGEEARGATAYVTLEPCSHYGRS---PPCAQFIIECGIRRVVVCVDDPD 108
           +  A +    A     LE CS +      P C   +   GI+ V     + D
Sbjct: 59  IRVASQVLGTA----NLEGCSVFASGHPCPMCMAAMRLAGIKTVNYAYSNED 106


>gi|194044048|ref|XP_001925118.1| PREDICTED: deoxycytidylate deaminase-like [Sus scrofa]
          Length = 178

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 35/146 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        N  V   IV  +  ++G G                  
Sbjct: 14  EWPEYFMAVAFLSAQRSK---DPNSQVGACIVNAENKIVGIGYNGMPNGCSDDLLPWRRT 70

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G T YV L PC+       CA+ II+ GI+ 
Sbjct: 71  AENILDTKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNE------CAKLIIQAGIKE 124

Query: 100 VVVCVDDPDVRVSGRGLQWLSQ-KGI 124
           V+   D           + + +  G+
Sbjct: 125 VIFMSDKYHDSNETTAARLMFEMAGV 150


>gi|32455816|ref|NP_862468.1| hypothetical protein pADP-1_p031 [Pseudomonas sp. ADP]
 gi|13937453|gb|AAK50264.1|U66917_31 hypothetical protein [Pseudomonas sp. ADP]
 gi|12644709|gb|AAK00500.1| cytosine deaminase-like protein [Acidovorax citrulli]
          Length = 158

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 54/149 (36%), Gaps = 20/149 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAE 56
           M  + F++  +  A+  +     L    P +  ++V  G ++ RG       G    HAE
Sbjct: 1   MEHTKFESSMLQIAIEEAE-ASFLEGGLP-IGSVLVHRGKLVSRGRNLRAQTGSTLHHAE 58

Query: 57  VQALEEAGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           + AL  AG +     R    Y TL PC      P C   +I  GI +VV+        V 
Sbjct: 59  MTALANAGRQPPEFYRETVLYTTLSPC------PMCTGAMILYGIPKVVIGT----PTVR 108

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
             G   L + G+ V           L   
Sbjct: 109 EWGEDRLRELGVEVVHTRSEACAELLSRM 137


>gi|62858897|ref|NP_001016265.1| dCMP deaminase [Xenopus (Silurana) tropicalis]
 gi|89266721|emb|CAJ83844.1| deoxycytidylate deaminase [Xenopus (Silurana) tropicalis]
          Length = 190

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 49/146 (33%), Gaps = 35/146 (23%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-------------------- 46
             FM+ A   ++        N  V   IV  +  ++G G                     
Sbjct: 28  EYFMAVAFLAAQRSK---DPNSQVGACIVNSENKIVGIGYNGMPNGCHDDVLPWARTAED 84

Query: 47  ---TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
              T Y    HAE+ A+  +   + +G T YV L PC+       CA+ +I+ GI+ V+ 
Sbjct: 85  RLDTKYPYVCHAELNAIMNKNTADVKGCTMYVALFPCNE------CAKLVIQAGIKEVIF 138

Query: 103 CVD-DPDVRVSGRGLQWLSQKGIIVD 127
             D   D              GI   
Sbjct: 139 MSDKYHDSPDMKAARHMFDLAGIKYT 164


>gi|324503290|gb|ADY41431.1| Deoxycytidylate deaminase [Ascaris suum]
          Length = 284

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 53/151 (35%), Gaps = 34/151 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
           S++  FM+ A   ++           V  +IV  D  +IG G                  
Sbjct: 110 SWEEYFMAVACLAAQRSK---DPVTQVGAVIVNPDLKIIGSGYNGMPNGCSDDVMPWGKD 166

Query: 47  ------TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A L    E  +G+T Y  L PC+       CA+ II+ GI  
Sbjct: 167 SDNPLETKYPFVCHAEMNAILNRNCESVKGSTIYTVLFPCNE------CAKLIIQAGISE 220

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           VV   D PD        +     G+   +  
Sbjct: 221 VVYKRDKPDKVEIIASKKMFDITGVRYRQFH 251


>gi|241889824|ref|ZP_04777122.1| ComE operon protein 2 [Gemella haemolysans ATCC 10379]
 gi|241863446|gb|EER67830.1| ComE operon protein 2 [Gemella haemolysans ATCC 10379]
          Length = 153

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 59/154 (38%), Gaps = 34/154 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------ 53
           M   S+D  FM+ +   S      T +  SV   IVKD  ++  G      G        
Sbjct: 1   MQRISWDEYFMAQSHLLSLRS---TCSRLSVGATIVKDKRIVSGGYNGSIKGDEHCIDVG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A+ +    G    GAT YVT  PC +      C + II+ GI+
Sbjct: 58  CKVVEGHCVRTIHAEINAILQCSKFGVGTEGATIYVTHFPCLN------CTKSIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
            +    D  +   +    + L + G++V ++   
Sbjct: 112 EICYANDYRNNEYAR---ELLEKSGVVVRKVDYD 142


>gi|288928373|ref|ZP_06422220.1| cytidine/deoxycytidylate deaminase family protein [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288331207|gb|EFC69791.1| cytidine/deoxycytidylate deaminase family protein [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 146

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 57/155 (36%), Gaps = 38/155 (24%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
             +  D R++  A  ++     +      V  L+VKD ++I  G     G P        
Sbjct: 6   KQTILDLRYLRMARIWAENSYCVRRK---VGALVVKDKMIISDGY---NGTPSGFENVCE 59

Query: 54  -----------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                      HAE  A   L  +   + G+T YVT  PC        C++ II+ GI+R
Sbjct: 60  DDNNVTKPYVLHAEANAITKLARSSNNSDGSTLYVTAAPCIE------CSKLIIQSGIKR 113

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
           VV             G++ L +  I V  +   + 
Sbjct: 114 VVYGEKYRL----EEGIELLRKANIEVIYLNPEQN 144


>gi|78045157|ref|YP_361349.1| putative comE operon protein 2 [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77997272|gb|ABB16171.1| putative comE operon protein 2 [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 170

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 48/131 (36%), Gaps = 40/131 (30%)

Query: 31  VACLIVKDGIVIGRGV---------------------------TAYGGCPHAEVQALEEA 63
           V  ++VKD  V+  G                                   HAE  A+ +A
Sbjct: 49  VGAVLVKDNRVLATGYNGAPKGVPHCEEVGCLREQEHVPSGQRHELCRGLHAEQNAIIQA 108

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G    G+T Y+T +PCS       CA+ +I  G+ RVV   D PD       +   +
Sbjct: 109 AVYGVSTSGSTIYITHQPCS------LCAKMLINAGVERVVYKGDYPD----SLAINLFT 158

Query: 121 QKGIIVDRMME 131
           + GI V +  E
Sbjct: 159 EAGIKVVKYGE 169


>gi|241950489|ref|XP_002417967.1| deoxycytidylate deaminase (dCMP deaminase), putative [Candida
           dubliniensis CD36]
 gi|223641305|emb|CAX45685.1| deoxycytidylate deaminase (dCMP deaminase), putative [Candida
           dubliniensis CD36]
          Length = 337

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 48/144 (33%), Gaps = 44/144 (30%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           ++D+ FM  A   +            V C+IV++  VI  G     G P           
Sbjct: 187 TWDSYFMRLA-DLAALRSNCMKR--RVGCVIVRENRVIATGY---NGTPRHLTNCNEGGC 240

Query: 54  -------------------HAEVQALEEAG-EEARG-ATAYVTLEPCSHYGRSPPCAQFI 92
                              HAE  AL EAG +  RG +  Y    PC        C+  I
Sbjct: 241 SRCNKGQGSGALLATCLCLHAEENALLEAGRDRIRGESVLYCNTCPCL------TCSIKI 294

Query: 93  IECGIRRVVVCVDDPDVRVSGRGL 116
           ++ GI+ VV          S + +
Sbjct: 295 VQSGIKEVVYAQSYSMDLQSHKVM 318


>gi|171779275|ref|ZP_02920246.1| hypothetical protein STRINF_01123 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282331|gb|EDT47758.1| hypothetical protein STRINF_01123 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 154

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 34/159 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY---------GG---- 51
           S++  FM+ A   S+     T     V  ++VKD  +I  G              G    
Sbjct: 6   SWEDYFMANAELISKRS---TCDRAFVGAVLVKDNRIIATGYNGGVSETDNCSEAGHKME 62

Query: 52  ------CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE+ AL +    G   +G   YVT  PC +      C + +++ GI+++  
Sbjct: 63  DGHCIRTVHAEMNALIQCAKEGISTKGTEIYVTHFPCIN------CTKALLQAGIKKITY 116

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
                  R+    ++ + QKG+   +    E ++ +  +
Sbjct: 117 ---KTAYRMHPFAIELMKQKGVECVQHDVPEVRLGMDDF 152


>gi|255728969|ref|XP_002549410.1| deoxycytidylate deaminase [Candida tropicalis MYA-3404]
 gi|240133726|gb|EER33282.1| deoxycytidylate deaminase [Candida tropicalis MYA-3404]
          Length = 339

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 48/144 (33%), Gaps = 44/144 (30%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           ++D+ FM  A   +            V C+IV++  VI  G     G P           
Sbjct: 189 TWDSYFMRLA-DLAALRSNCMKR--RVGCVIVRENRVIATGY---NGTPRHLTNCNDGGC 242

Query: 54  -------------------HAEVQALEEAG-EEARG-ATAYVTLEPCSHYGRSPPCAQFI 92
                              HAE  AL EAG +  RG +  Y    PC        C+  I
Sbjct: 243 SRCNKGQGSGASLSTCLCLHAEENALLEAGRDRIRGESVLYCNTCPCL------TCSIKI 296

Query: 93  IECGIRRVVVCVDDPDVRVSGRGL 116
           ++ GI+ VV          S + +
Sbjct: 297 VQSGIKEVVYAQSYSMDIQSHKVM 320


>gi|67464318|pdb|1YSB|A Chain A, Yeast Cytosine Deaminase Triple Mutant
 gi|67464319|pdb|1YSB|B Chain B, Yeast Cytosine Deaminase Triple Mutant
          Length = 161

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 58/155 (37%), Gaps = 19/155 (12%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCPHAEVQ 58
           S +D + M  A   +          P   CLI  KDG V+GRG            H E+ 
Sbjct: 11  SKWDQKGMDIAYEEALLG-YKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEIS 69

Query: 59  ALEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
            LE  G       +  T Y TL PC        C   II  GI R V+     +V    +
Sbjct: 70  TLENCGRLEGKVYKDTTLYTTLSPCDM------CTGAIIMYGIPRCVIG---ENVNFKSK 120

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           G ++L  +G  V  + +   K  +  ++  + +  
Sbjct: 121 GEKYLQTRGHEVVVVDDERCKKLMKQFIDERPQDW 155


>gi|317495073|ref|ZP_07953445.1| ComE operon protein 2 [Gemella moribillum M424]
 gi|316914845|gb|EFV36319.1| ComE operon protein 2 [Gemella moribillum M424]
          Length = 154

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 59/154 (38%), Gaps = 34/154 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------ 53
           M   S+D  FM+ +   S      T +  SV   IVKD  ++  G      G        
Sbjct: 1   MQRISWDEYFMAQSHLLSLRS---TCSRLSVGATIVKDKRIVSGGYNGSIKGDEHCIDVG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A+ +    G    GAT YVT  PC +      C + II+ GI+
Sbjct: 58  CKVVEGHCVRTIHAEINAILQCSRFGVGTEGATIYVTHFPCLN------CTKSIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
            +    D  +   +    + L + GIIV ++   
Sbjct: 112 EICYANDYRNNEYAR---ELLEKSGIIVRKVDYD 142


>gi|260777055|ref|ZP_05885949.1| dihydrofolate reductase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606721|gb|EEX32995.1| dihydrofolate reductase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 176

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 78/214 (36%), Gaps = 46/214 (21%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL-----RAQSDAILVGIGTVLADD 204
               + IA S D  I     G   +   +S    H +       + DA+++G  T+    
Sbjct: 1   MSNIVFIATSLDGYIADKEGGLDWL-HSVSNPDNHDMGFSAIMERVDALVMGRNTLD--- 56

Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
                            ++L    +              PV +++   D V      K  
Sbjct: 57  -----------------VVLGFGSEWPYS---------KPVFVLSNTMDKVPEGYEDK-- 88

Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
              ++    +LK +L  L  +G   L ++GG  V  SF+   L+D ++L    +++G G 
Sbjct: 89  ---VFLVKGELKDVLNELNAQGYKDLYIDGGKTV-QSFLQQDLIDEMVLTTIPVLLGGG- 143

Query: 325 IPSPLEEGYLEK-NFMCVRRD-YFGSDVCLEYIG 356
             +PL    ++  NF   + + + G+ V   Y+ 
Sbjct: 144 --APLFGSLVKPLNFKLHKSETHLGAIVQSHYLR 175


>gi|227502417|ref|ZP_03932466.1| nucleoside deaminase [Corynebacterium accolens ATCC 49725]
 gi|306834972|ref|ZP_07468023.1| tRNA-specific adenosine deaminase [Corynebacterium accolens ATCC
           49726]
 gi|227076786|gb|EEI14749.1| nucleoside deaminase [Corynebacterium accolens ATCC 49725]
 gi|304569138|gb|EFM44652.1| tRNA-specific adenosine deaminase [Corynebacterium accolens ATCC
           49726]
          Length = 147

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 53/155 (34%), Gaps = 25/155 (16%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEA-- 63
           M  AL  +R      + +  V  ++    G  +  GV           HAE++A+ +A  
Sbjct: 1   MQRALAVARQ---TPAGDVPVGAVLYDATGRELATGVNRREQLRDPTAHAEIEAIRQAVR 57

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
               G    G    VTLEPC+       CA  +    I  +V    +P     G  +  L
Sbjct: 58  IHGDGWRLIGCELVVTLEPCAM------CAGALQAARISSLVFGAFEPKTGACGSLVDVL 111

Query: 120 SQKGI-----IVDRMMESEGKIFLHAYLTRQVEKR 149
                     +   ++E +    L  + T   EK 
Sbjct: 112 RAPTAPFTPQVRGGVLEEDCVALLEKFFTTLREKW 146


>gi|262372745|ref|ZP_06066024.1| guanine deaminase (Guanase) (guanine aminase) (guanine
           aminohydrolase) (GAH) (GDEase) [Acinetobacter junii
           SH205]
 gi|262312770|gb|EEY93855.1| guanine deaminase (Guanase) (guanine aminase) (guanine
           aminohydrolase) (GAH) (GDEase) [Acinetobacter junii
           SH205]
          Length = 151

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 41/117 (35%), Gaps = 27/117 (23%)

Query: 8   ARFMSAALRFS-----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
            +F+  A+  +     R            A L+VK+  +I  GV           HAE+ 
Sbjct: 4   QKFIQQAVDLALENVKRGGR-------PFAALVVKNNEIISTGVNQIKLTNDPTAHAELL 56

Query: 59  ALEEAG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           AL EAG           T Y + +PC      P C   I   GI +V     + D  
Sbjct: 57  ALREAGRLLSTPNLEDCTVYASGQPC------PMCLAAIRMAGISKVFFAFSNTDAE 107


>gi|158523013|ref|YP_001530883.1| CMP/dCMP deaminase zinc-binding [Desulfococcus oleovorans Hxd3]
 gi|158511839|gb|ABW68806.1| CMP/dCMP deaminase zinc-binding [Desulfococcus oleovorans Hxd3]
          Length = 168

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 21/111 (18%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------TAYGGCPHAEVQALE 61
             FM+ AL+ +R    L +    V C+I     V+  G         +    HAE+ AL 
Sbjct: 4   QHFMTIALKQARQA--LDAGEFPVGCVIADGKTVVATGARQGTRQNRFNETDHAEIVALR 61

Query: 62  E------AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
                  A + A G   Y TLEPC        C   I+  GI ++V   +D
Sbjct: 62  NLATLDPAPDRA-GLVLYSTLEPCLM------CFGAILIHGISKIVYGCED 105


>gi|319763286|ref|YP_004127223.1| cmp/dcmp deaminase zinc-binding protein [Alicycliphilus
           denitrificans BC]
 gi|317117847|gb|ADV00336.1| CMP/dCMP deaminase zinc-binding protein [Alicycliphilus
           denitrificans BC]
          Length = 358

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 58/156 (37%), Gaps = 22/156 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
           M  S  DA +M      ++    L      V  ++V+ G VI  G  A         HAE
Sbjct: 1   MSESEDDATWMRE--ALAQARAALQDGEVPVGAVLVRGGEVIATGRNAPIAGHDPTAHAE 58

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL  A          G T YVTLEPC+       CA  ++   + RVV    DP    
Sbjct: 59  IAALRAAAARLGNYRLDGCTLYVTLEPCAM------CAGAMLHARLPRVVYGAADPKTGA 112

Query: 112 SGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
           +G  +       L+ +  +   ++  E    L  + 
Sbjct: 113 AGSVVDLFAEPRLNHQTRVAGGVLAEECGALLSGFF 148


>gi|317128288|ref|YP_004094570.1| ComE operon protein 2 [Bacillus cellulosilyticus DSM 2522]
 gi|315473236|gb|ADU29839.1| ComE operon protein 2 [Bacillus cellulosilyticus DSM 2522]
          Length = 188

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 59/156 (37%), Gaps = 34/156 (21%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------ 53
           M   S+   FM+ +   +      T +   V   IV+D  +I  G   A  G        
Sbjct: 1   MDRISWHQYFMAQSHLLALRS---TCSRLMVGATIVRDKRIIAGGYNGAISGGVHCIDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAEV AL +    G    G+  YVT  PC +      C + +I+ GI+
Sbjct: 58  CYVIDDHCVRTIHAEVNALLQCAKFGVATEGSEIYVTHFPCLN------CCKALIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
           +V    D  +   +   L+   Q  +IV+++   E 
Sbjct: 112 KVYYANDYKNHPYA---LELFEQADVIVEQVELEEM 144


>gi|62262991|gb|AAX78118.1| unknown protein [synthetic construct]
          Length = 188

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 52/155 (33%), Gaps = 23/155 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
             S  D  FM  A + +          P +  ++V+D  +I +      G      HAE+
Sbjct: 29  NYSDQDIFFMQKAYQQALLA-YQAGEVP-IGAVLVRDDQIIVQNFNQTIGLNDPTAHAEI 86

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
             L  A  +           YVTLEPC        C   +I+  +  +V   DD  V   
Sbjct: 87  LVLRSAALKLGNYRLVNTKLYVTLEPCIM------CLGGLIQARVPELVYACDDSRVGAF 140

Query: 113 GRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
            R  +    K I     +   +M  E    L  + 
Sbjct: 141 SRE-KLHHNKNINHNLGVTAGVMADECSKLLKDFF 174


>gi|303289711|ref|XP_003064143.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Micromonas pusilla CCMP1545]
 gi|226454459|gb|EEH51765.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Micromonas pusilla CCMP1545]
          Length = 371

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 48/125 (38%), Gaps = 36/125 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI-GRGV----------------- 46
           S+D  FMS A   ++        N  V  +IV    VI G G                  
Sbjct: 134 SWDDYFMSVAFLSAQRSK---DPNKQVGAVIVGADKVISGVGYNGFPRGCSDRSLPWAKR 190

Query: 47  --------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                   T Y    HAE+ A+  +  +   GAT YVT+ PC+       C++ II+ GI
Sbjct: 191 SPTDDPMETKYAYVCHAEMNAIMNKNSQSLNGATMYVTMYPCNE------CSKLIIQSGI 244

Query: 98  RRVVV 102
             VV 
Sbjct: 245 TEVVY 249


>gi|171909718|ref|ZP_02925188.1| CMP/dCMP deaminase, zinc-binding protein [Verrucomicrobium spinosum
           DSM 4136]
          Length = 169

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 51/162 (31%), Gaps = 21/162 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57
           P S   A F+  A+  +     ++        ++VK G VI RGV           HAE+
Sbjct: 8   PTSVAPAAFLQEAIDLA--VANISEGGRPFGAVVVKYGRVISRGVNETHLSNDPTAHAEM 65

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+  A +          T Y +  PC      P C   +   G+  V     +P+    
Sbjct: 66  LAVRAASQVLQSPLLESCTLYASGHPC------PMCLAAMRMAGVTDVFYAFTNPEAEPY 119

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL 154
           G     L         +  S   + L  + T       +   
Sbjct: 120 GLSTTCLY----EELGLPTSLRHLRLVHFPTELTGHHPYEAW 157


>gi|328554294|gb|AEB24786.1| enzyme associated to DNA transport (competence) [Bacillus
           amyloliquefaciens TA208]
 gi|328912690|gb|AEB64286.1| ComE operon protein 2 [Bacillus amyloliquefaciens LL3]
          Length = 189

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 58/162 (35%), Gaps = 34/162 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------ 53
           M   S++  FM+ +   +      T    SV   +V+D  +I  G      G        
Sbjct: 1   MERISWNQYFMAQSHLLALRS---TCPRLSVGATVVRDKRMIAGGYNGSIAGGVHCADEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A+ +    G    GA  YVT  PC        C + II+ GI+
Sbjct: 58  CLLIDNHCQRTIHAEMNAILQCSKFGVPTEGAEIYVTHYPCIQ------CCKSIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
            V    D      +    +  +Q G+ V+++   E  I L  
Sbjct: 112 TVYYAEDYKTQPYAK---ELFNQAGVKVEQVELDEMIIDLKN 150


>gi|210623304|ref|ZP_03293721.1| hypothetical protein CLOHIR_01671 [Clostridium hiranonis DSM 13275]
 gi|210153705|gb|EEA84711.1| hypothetical protein CLOHIR_01671 [Clostridium hiranonis DSM 13275]
          Length = 149

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 55/158 (34%), Gaps = 43/158 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D  FM  A    +     T     V  +IVKD  ++  G                   
Sbjct: 4   SWDEYFMEIA-EVVKKR--STCIRRQVGAIIVKDKQILTTGYNGAPKNLEHCQNIGCKRE 60

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G   + AT YVT  PC        CA+  I 
Sbjct: 61  QMHIPSGERHELCRALHAEQNAIIQAAYNGVSIKDATLYVTTRPC------VLCAKMCIN 114

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
            GI++++   D PD   +    Q L + G+ + +  E 
Sbjct: 115 AGIKKIIYKGDYPDDLST----QLLDEAGVEMIKYPEE 148


>gi|89257159|ref|YP_514521.1| zinc-binding domain-containing protein [Francisella tularensis
           subsp. holarctica LVS]
 gi|115315498|ref|YP_764221.1| cytosine/adenosine deaminase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134302708|ref|YP_001122676.1| cytidine and deoxycytidylate deaminase zinc-binding
           domain-containing protein [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|156503384|ref|YP_001429449.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing
           protein [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|187932249|ref|YP_001892234.1| zinc-binding protein [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|290953357|ref|ZP_06557978.1| zinc-binding protein [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295313404|ref|ZP_06804011.1| zinc-binding protein [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89144990|emb|CAJ80350.1| Zinc-binding domain protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115130397|gb|ABI83584.1| probable cytosine/adenosine deaminase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134050485|gb|ABO47556.1| Cytidine and deoxycytidylate deaminase Zinc-binding domain protein
           [Francisella tularensis subsp. tularensis WY96-3418]
 gi|156253987|gb|ABU62493.1| cytidine/deoxycytidylate deaminase, zinc-binding domain protein
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|187713158|gb|ACD31455.1| zinc-binding protein [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 153

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 52/155 (33%), Gaps = 23/155 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
             S  D  FM  A + +          P +  ++V+D  +I +      G      HAE+
Sbjct: 3   NYSDQDIFFMQKAYQQALLA-YQAGEVP-IGAVLVRDDQIIVQNFNQTIGLNDPTAHAEI 60

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
             L  A  +           YVTLEPC        C   +I+  +  +V   DD  V   
Sbjct: 61  LVLRSAALKLGNYRLVNTKLYVTLEPCIM------CLGGLIQARVPELVYACDDSRVGAF 114

Query: 113 GRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
            R  +    K I     +   +M  E    L  + 
Sbjct: 115 SRE-KLHHNKNINHNLGVTAGVMADECGKLLKDFF 148


>gi|325191115|emb|CCA25601.1| SUMO ligase putative [Albugo laibachii Nc14]
          Length = 1298

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 41/127 (32%), Gaps = 19/127 (14%)

Query: 5    SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
            + D  FM  AL  +     L      V C+ V    +I               HAE+ A+
Sbjct: 1111 NKDVGFMREALEEAERA--LVRGEVPVGCVAVYQNQIISFASNRTNELCNATKHAELVAI 1168

Query: 61   -------EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                          +  T YVT EPC        CA  +++C + RVV    +      G
Sbjct: 1169 DYIVSNYNNTRAIFQETTFYVTCEPCIM------CAAALLQCKVVRVVFGCQNFRFGGCG 1222

Query: 114  RGLQWLS 120
              L    
Sbjct: 1223 SVLSLHE 1229


>gi|325191114|emb|CCA25600.1| SUMO ligase putative [Albugo laibachii Nc14]
          Length = 1287

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 41/127 (32%), Gaps = 19/127 (14%)

Query: 5    SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
            + D  FM  AL  +     L      V C+ V    +I               HAE+ A+
Sbjct: 1100 NKDVGFMREALEEAERA--LVRGEVPVGCVAVYQNQIISFASNRTNELCNATKHAELVAI 1157

Query: 61   -------EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                          +  T YVT EPC        CA  +++C + RVV    +      G
Sbjct: 1158 DYIVSNYNNTRAIFQETTFYVTCEPCIM------CAAALLQCKVVRVVFGCQNFRFGGCG 1211

Query: 114  RGLQWLS 120
              L    
Sbjct: 1212 SVLSLHE 1218


>gi|325191111|emb|CCA25597.1| SUMO ligase putative [Albugo laibachii Nc14]
          Length = 1290

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 41/127 (32%), Gaps = 19/127 (14%)

Query: 5    SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
            + D  FM  AL  +     L      V C+ V    +I               HAE+ A+
Sbjct: 1103 NKDVGFMREALEEAERA--LVRGEVPVGCVAVYQNQIISFASNRTNELCNATKHAELVAI 1160

Query: 61   -------EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                          +  T YVT EPC        CA  +++C + RVV    +      G
Sbjct: 1161 DYIVSNYNNTRAIFQETTFYVTCEPCIM------CAAALLQCKVVRVVFGCQNFRFGGCG 1214

Query: 114  RGLQWLS 120
              L    
Sbjct: 1215 SVLSLHE 1221


>gi|325191110|emb|CCA25596.1| SUMO ligase putative [Albugo laibachii Nc14]
          Length = 1279

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 41/127 (32%), Gaps = 19/127 (14%)

Query: 5    SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
            + D  FM  AL  +     L      V C+ V    +I               HAE+ A+
Sbjct: 1092 NKDVGFMREALEEAERA--LVRGEVPVGCVAVYQNQIISFASNRTNELCNATKHAELVAI 1149

Query: 61   -------EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                          +  T YVT EPC        CA  +++C + RVV    +      G
Sbjct: 1150 DYIVSNYNNTRAIFQETTFYVTCEPCIM------CAAALLQCKVVRVVFGCQNFRFGGCG 1203

Query: 114  RGLQWLS 120
              L    
Sbjct: 1204 SVLSLHE 1210


>gi|325191109|emb|CCA25595.1| SUMO ligase putative [Albugo laibachii Nc14]
          Length = 1295

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 41/127 (32%), Gaps = 19/127 (14%)

Query: 5    SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
            + D  FM  AL  +     L      V C+ V    +I               HAE+ A+
Sbjct: 1108 NKDVGFMREALEEAERA--LVRGEVPVGCVAVYQNQIISFASNRTNELCNATKHAELVAI 1165

Query: 61   -------EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                          +  T YVT EPC        CA  +++C + RVV    +      G
Sbjct: 1166 DYIVSNYNNTRAIFQETTFYVTCEPCIM------CAAALLQCKVVRVVFGCQNFRFGGCG 1219

Query: 114  RGLQWLS 120
              L    
Sbjct: 1220 SVLSLHE 1226


>gi|332638741|ref|ZP_08417604.1| dCMP deaminase [Weissella cibaria KACC 11862]
          Length = 161

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 52/137 (37%), Gaps = 31/137 (22%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP------------- 53
           A FM  A   +      T T   V  ++VKDG +I  G      G P             
Sbjct: 10  AYFMMQAAMLASRS---TCTRLHVGAVVVKDGRIIASGYNGSVTGTPHCTEVGDLLVDGH 66

Query: 54  -----HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE  A   L + G  A GA  YVT  PC H      C +F+++ GI+++    +
Sbjct: 67  CIRAVHAEQNALMQLAKMGIAAEGAEIYVTDFPCVH------CTKFLLQAGIKKINYLRN 120

Query: 106 DPDVRVSGRGLQWLSQK 122
             +   +   ++  +  
Sbjct: 121 YNNDEFAMSLIEAKNVA 137


>gi|255630329|gb|ACU15521.1| unknown [Glycine max]
          Length = 186

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 16/116 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           V   D +F+  A+  +   V      P    +IV +  ++               HAEV 
Sbjct: 27  VQDRDHKFLRKAVEEAYKGVDCKDGGP-FGVVIVHNDEIVASCHNMVLCNTDPTAHAEVT 85

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           A+ EA ++ +         Y + EPC      P C   I    I+R+V        
Sbjct: 86  AIREACKKLKQIELADCEIYASCEPC------PMCFGAIHLSRIKRLVYGAKAEAA 135


>gi|22299012|ref|NP_682259.1| hypothetical protein tlr1469 [Thermosynechococcus elongatus BP-1]
 gi|22295194|dbj|BAC09021.1| tlr1469 [Thermosynechococcus elongatus BP-1]
          Length = 176

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 63/174 (36%), Gaps = 11/174 (6%)

Query: 191 DAILVGIGTVLA-------DDPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
           DA+L G  T+           P L   R +  +   P++I+     +L L+    +  + 
Sbjct: 2   DAVLFGATTLRLGGTAMRLQSPHLIAEREHQGRSPQPLQIVCSASGELDLNLPFFRQPI- 60

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
              ++ TE        A    +      +  D  +    L   GV +L V GG  +  S 
Sbjct: 61  PRALLTTEKGASRWQGATAFDHCWCAGGEAIDWPQAFAHLQASGVQTLAVLGGGQLFASL 120

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-EKNFMCVRRDYFGSDVCLEYI 355
           +    +D + L    +++G    PS   EG       + +     G++V L Y 
Sbjct: 121 LEIGAIDELWLTLCPLLLGS-AAPSLYPEGNPCSGKLILLNVLPVGNEVYLHYR 173


>gi|305680082|ref|ZP_07402892.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Corynebacterium matruchotii ATCC 14266]
 gi|305660702|gb|EFM50199.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Corynebacterium matruchotii ATCC 14266]
          Length = 147

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 50/150 (33%), Gaps = 26/150 (17%)

Query: 16  RFSRWHVGLTSTNP----SVACLIVK-DGIVIGRGVTAYGG----CPHAEVQALEEA--- 63
             ++    L    P     V  +I   DG VIGRG            HAE+ A+ EA   
Sbjct: 3   AEAKMRHALAVPTPLGDVPVGAVIFDPDGNVIGRGSNRREADGDPTAHAEIIAIREAVRN 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G      T  VTLEPC        CA  ++   I  ++    +P +   G     + 
Sbjct: 63  FHDGWRLTDCTIAVTLEPCCM------CAGALVAARIGTIIFGAYEPKMGACGSVFDVVR 116

Query: 121 QKGI-----IVDRMMESEGKIFLHAYLTRQ 145
              +     ++  ++  E    L  +    
Sbjct: 117 DPQVLYQPQVIGGVLADECAAQLGVFFQEC 146


>gi|303277403|ref|XP_003057995.1| cytidine/deoxycytidylate deaminase family protein [Micromonas
           pusilla CCMP1545]
 gi|226460652|gb|EEH57946.1| cytidine/deoxycytidylate deaminase family protein [Micromonas
           pusilla CCMP1545]
          Length = 201

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 20/125 (16%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVT----AYGGCPHAEVQALEEAG 64
           MS A+  ++           V  ++V+   G V+               HAE++ + +  
Sbjct: 1   MSLAIEEAKLASRRLEV--PVGAVLVRASTGEVLASHHNTVDEEDDPTAHAELKCIRDGA 58

Query: 65  EEARG------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           +   G       T YVTLEPC      P CA  ++   +  VV    +P +   G  L  
Sbjct: 59  KRLGGWRYLAETTLYVTLEPC------PMCAGAVLNARLGEVVWGAPNPLIGGDGSWLPI 112

Query: 119 LSQKG 123
           +   G
Sbjct: 113 MGDGG 117


>gi|225020161|ref|ZP_03709353.1| hypothetical protein CORMATOL_00161 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224947126|gb|EEG28335.1| hypothetical protein CORMATOL_00161 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 158

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 50/150 (33%), Gaps = 26/150 (17%)

Query: 16  RFSRWHVGLTSTNP----SVACLIVK-DGIVIGRGVTAYGG----CPHAEVQALEEA--- 63
             ++    L    P     V  +I   DG VIGRG            HAE+ A+ EA   
Sbjct: 14  AEAKMRHALAVPTPLGDVPVGAVIFDPDGNVIGRGSNRREADGDPTAHAEIIAIREAVRN 73

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G      T  VTLEPC        CA  ++   I  ++    +P +   G     + 
Sbjct: 74  FHDGWRLTDCTIAVTLEPCCM------CAGALVAARIGTIIFGAYEPKMGACGSVFDVVR 127

Query: 121 QKGI-----IVDRMMESEGKIFLHAYLTRQ 145
              +     ++  ++  E    L  +    
Sbjct: 128 DPQVLYQPQVIGGVLADECAAQLGVFFQEC 157


>gi|219684000|ref|YP_002470383.1| cytidine and deoxycytidylate deaminase [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|219621650|gb|ACL29807.1| possible cytidine and deoxycytidylate deaminase [Bifidobacterium
           animalis subsp. lactis AD011]
          Length = 152

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 55/155 (35%), Gaps = 23/155 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT--AYGGCP--HAEVQALEE 62
           A  M  AL  +R     ++ +  V  +++   G VIGRG         P  HAE+ A+ E
Sbjct: 5   AEAMGEALAQARMAR--SAGDVPVGAVVLDAHGEVIGRGRNLRERDADPLAHAEIVAMRE 62

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A            T  VTLEPC      P CA   ++  I R+V    D  +   G    
Sbjct: 63  AAAVRGNWNLADCTLVVTLEPC------PMCAGACLQTRIGRIVFGGWDAKLGACGSVWD 116

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVE 147
                 +     +   + E E    L  +   +  
Sbjct: 117 IPRDPHVGHEPEVYGGVCERECTALLAEFFHSRRH 151


>gi|87307959|ref|ZP_01090102.1| cytosine deaminase [Blastopirellula marina DSM 3645]
 gi|87289573|gb|EAQ81464.1| cytosine deaminase [Blastopirellula marina DSM 3645]
          Length = 145

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 61/152 (40%), Gaps = 21/152 (13%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALE 61
            D  F+  A+  +R   GL      +  ++V DG V G+G            HAE+  LE
Sbjct: 1   MDE-FLKLAIEEARK--GLAEGGIPIGSVLVVDGQVRGQGHNRRVQKGSAILHAEMDCLE 57

Query: 62  EAG----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            AG    ++ + A  Y TL PC     +       +   I ++V+  +           +
Sbjct: 58  AAGRLTAKDYQRAVLYSTLSPCDMCSGTA------LLYKIPKIVIGENQTFQGPE----E 107

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           ++  +G+ ++ +  +E    +  ++ ++ E  
Sbjct: 108 YVRSRGVQLEIVDSAECIELMREFIAQRPELW 139


>gi|160893547|ref|ZP_02074331.1| hypothetical protein CLOL250_01101 [Clostridium sp. L2-50]
 gi|156864532|gb|EDO57963.1| hypothetical protein CLOL250_01101 [Clostridium sp. L2-50]
          Length = 174

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 54/149 (36%), Gaps = 38/149 (25%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGV-------------TAYG 50
           S+D  FM  AL  +         +  V   IV D   ++  G                  
Sbjct: 23  SWDQYFMGIALLSAERSK---DPSTQVGACIVDDNNRILSEGYNGMPAGCEDDIMPWGKI 79

Query: 51  GCP---------HAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           G P         HAE+ A+    G   + A  Y TL PC+       CA+ II+CGI+ V
Sbjct: 80  GDPLNNKYFFVCHAELNAILNYRGGSLKDARLYSTLFPCNE------CAKAIIQCGIKEV 133

Query: 101 VVCVDDP---DVRVSGRGLQWLSQKGIIV 126
           +   D     D  ++ + +  +   G+  
Sbjct: 134 IYLSDKYASTDSTMASKRMFDM--AGVAY 160


>gi|108759248|ref|YP_632223.1| cytidine and deoxycytidylate deaminase zinc-binding
           domain-containing protein [Myxococcus xanthus DK 1622]
 gi|108463128|gb|ABF88313.1| cytidine and deoxycytidylate deaminase zinc-binding domain protein
           [Myxococcus xanthus DK 1622]
          Length = 150

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 44/129 (34%), Gaps = 31/129 (24%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--------------- 49
           S+D  FM  A + +      T     V  +IV+   ++  G                   
Sbjct: 6   SWDQYFMDIATQVASRA---TCDRKHVGAVIVRGRTILSTGYNGAIRGLPHCDDVGHMME 62

Query: 50  ----GGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  A+ +A   G    GAT Y T  PC       PC + I   G+ R+V 
Sbjct: 63  NGHCVATVHAEANAIIQAATNGVSIDGATIYTTASPCW------PCFKLIANAGLVRIVF 116

Query: 103 CVDDPDVRV 111
                D R+
Sbjct: 117 GEFYRDPRI 125


>gi|188583522|ref|YP_001926967.1| CMP/dCMP deaminase zinc-binding [Methylobacterium populi BJ001]
 gi|179347020|gb|ACB82432.1| CMP/dCMP deaminase zinc-binding [Methylobacterium populi BJ001]
          Length = 147

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 42/127 (33%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            V  ++V+DG V+               HAE+ A+  A      E   G   YVTLEPC 
Sbjct: 22  PVGAVVVRDGAVLAVASNRPRALSDPTAHAEILAIRAACAALRDERLTGCDLYVTLEPC- 80

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPD---VRVSGRGLQW--LSQKGIIVDRMMESEGK 135
                P CA  I    IRR+     DP    V    R            +     E E  
Sbjct: 81  -----PMCAGAIAFARIRRLYYAASDPKGGGVEHGPRVFNQPTCHHAPEVYSGFREGEAA 135

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 136 GLLRDFF 142


>gi|290890962|ref|ZP_06554026.1| hypothetical protein AWRIB429_1416 [Oenococcus oeni AWRIB429]
 gi|290479361|gb|EFD88021.1| hypothetical protein AWRIB429_1416 [Oenococcus oeni AWRIB429]
          Length = 156

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 39/123 (31%), Gaps = 17/123 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ ++           +  ++VKD  VI               HAE   +E A
Sbjct: 9   EEFMQLALKQAQTA--FDEGEVPIGAVLVKDNQVIAADHNRKEQSGIATAHAEKLVIEGA 66

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       + +VT+EPC        C   II+  I R+     DP           
Sbjct: 67  NRSLGDWRLNDCSLFVTIEPC------VMCCGAIIQSRIPRLFYGAADPKFGGVSSLYHL 120

Query: 119 LSQ 121
           L  
Sbjct: 121 LED 123


>gi|154686818|ref|YP_001421979.1| hypothetical protein RBAM_023880 [Bacillus amyloliquefaciens FZB42]
 gi|308174347|ref|YP_003921052.1| DNA transport protein [Bacillus amyloliquefaciens DSM 7]
 gi|154352669|gb|ABS74748.1| ComEB [Bacillus amyloliquefaciens FZB42]
 gi|307607211|emb|CBI43582.1| putative enzyme associated to DNA transport (competence) [Bacillus
           amyloliquefaciens DSM 7]
          Length = 189

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 58/162 (35%), Gaps = 34/162 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------ 53
           M   S++  FM+ +   +      T    SV   +V+D  +I  G      G        
Sbjct: 1   MERISWNQYFMAQSHLLALRS---TCPRLSVGATVVRDKRMIAGGYNGSIAGGVHCADEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A+ +    G    GA  YVT  PC        C + II+ GI+
Sbjct: 58  CLLIDNHCQRTIHAEMNAILQCSKFGVPTEGAEIYVTHYPCIQ------CCKSIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
            V    D      +    +  SQ G+ V+++   E  I L  
Sbjct: 112 TVYYAEDYKTQPYAK---ELFSQAGVKVEQVELDEMIIDLKN 150


>gi|116491396|ref|YP_810940.1| tRNA-adenosine deaminase [Oenococcus oeni PSU-1]
 gi|116092121|gb|ABJ57275.1| tRNA-adenosine deaminase [Oenococcus oeni PSU-1]
          Length = 156

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 39/123 (31%), Gaps = 17/123 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ ++           +  ++VKD  VI               HAE   +E A
Sbjct: 9   EEFMQLALKQAQTA--FDEGEVPIGAVLVKDNQVIAADHNRKEQSGIATAHAEKLVIEGA 66

Query: 64  G-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       + +VT+EPC        C   II+  I R+     DP           
Sbjct: 67  NCSLGDWRLNDCSLFVTIEPC------VMCCGAIIQSRIPRLFYGAADPKFGGVSSLYHL 120

Query: 119 LSQ 121
           L  
Sbjct: 121 LED 123


>gi|149742700|ref|XP_001492380.1| PREDICTED: dCMP deaminase [Equus caballus]
          Length = 178

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 50/143 (34%), Gaps = 35/143 (24%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-------------------- 46
             FM+ A   ++        N  V   IV  +  ++G G                     
Sbjct: 17  EYFMAVAFLSAQRSK---DPNSQVGACIVNAENKIVGIGYNGMPNGCSDDLLPWRRTAEN 73

Query: 47  ---TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
              T Y    HAE+ A+  +   + +G T YV L PC+       CA+ II+ GI+ V+ 
Sbjct: 74  KLDTKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNE------CAKLIIQAGIKEVIF 127

Query: 103 CVDDPDVRVSGRGLQWLSQ-KGI 124
             D           + L    G+
Sbjct: 128 MSDKYHDSDEATAARLLFDMAGV 150


>gi|152988290|ref|YP_001348100.1| putative deaminase [Pseudomonas aeruginosa PA7]
 gi|150963448|gb|ABR85473.1| probable deaminase [Pseudomonas aeruginosa PA7]
          Length = 151

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 42/113 (37%), Gaps = 23/113 (20%)

Query: 8   ARFMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
             FM  A+  +R      G          ++V+DG V+ RGV      +    HAE+QA+
Sbjct: 4   ETFMREAIALARANVEAGGR-----PFGAVLVRDGQVLARGVNQTHESHDPSAHAELQAI 58

Query: 61  EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            +A          G   Y +  PC      P C   +  CGIR       + D
Sbjct: 59  RQASRLLGSPRLDGCEIYASGHPC------PMCLAAMHLCGIRAAWFAYSNED 105


>gi|25027973|ref|NP_738027.1| hypothetical protein CE1417 [Corynebacterium efficiens YS-314]
 gi|23493256|dbj|BAC18227.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 157

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 19/112 (16%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56
           M ++     F+  A+  SR  +      P    +I +   +I               HAE
Sbjct: 1   MTMNPN---FLHRAVELSRRGMEAGQGGP-FGAVIARGDRIIAEAYNTVLATKDPTNHAE 56

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           + A+  A       +  G   YV  +PC      P CA  +    + RV   
Sbjct: 57  IVAIRSAARVLGTVDLTGCELYVNAQPC------PMCAGAVYWARLERVYFA 102


>gi|299115717|emb|CBN74282.1| tRNA specific adenosine deaminase [Ectocarpus siliculosus]
          Length = 186

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 48/129 (37%), Gaps = 23/129 (17%)

Query: 3   VSSFDAR---FMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAY----GGCP 53
           V+S D +   +M  AL+ +     L+     V C++V      +I  G            
Sbjct: 7   VASSDEQNAVYMRLALKEAEMA--LSKGEVPVGCVVVHKPTARIISCGHNETSEAFNATR 64

Query: 54  HAEVQALE---EAGEE---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           HAE+ A++    A  +    R    +VT EPC        CA  + +  I+ VV    + 
Sbjct: 65  HAELVAIDGILRAQTDLSLLRECDLFVTCEPCIM------CAAALRDVKIKTVVFGCSND 118

Query: 108 DVRVSGRGL 116
                G  L
Sbjct: 119 RFGGCGSVL 127


>gi|152112361|sp|Q1RGK7|Y1426_RICBR RecName: Full=Uncharacterized deaminase RBE_1426
          Length = 145

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 21/124 (16%)

Query: 11  MSAALRFSRWHVGLTSTN-PSVACLIVK--DGIVIGRGVT----AYGGCPHAEVQALEEA 63
           M  AL+ +       S N   V  +IV   +  +I +             HAE+ A+ EA
Sbjct: 1   MREALKQAEIAF---SKNEVPVGAVIVDRENQKIISKSYNNTEEKNNALYHAEIIAINEA 57

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                 +       YVTLEPC+       CA  I    ++R+     D         L++
Sbjct: 58  CRIISSKNLSDYDIYVTLEPCAM------CAAAIAHSRLKRLFYGASDSKHGAVESNLRY 111

Query: 119 LSQK 122
            + K
Sbjct: 112 FNSK 115


>gi|326430014|gb|EGD75584.1| deoxycytidylate deaminase [Salpingoeca sp. ATCC 50818]
          Length = 237

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 57/205 (27%), Gaps = 39/205 (19%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV---------------------- 46
            M+ A+  S+           V C+IV   GIV+  G                       
Sbjct: 23  HMAMAILASKRSK---DPVTQVGCVIVDPKGIVVSMGYNGFPIGCSDEELPWDKHADNPL 79

Query: 47  -TAYGGCPHAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
            T +    HAE+ A+    + +  G   Y TL PC+       CA+ II+ GI+ VV   
Sbjct: 80  ETKFPYVCHAEMNAILNTNDQDVSGCILYATLFPCNE------CAKMIIQAGIKEVVYLC 133

Query: 105 DD-PDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQ----VEKRSHITLKIAVS 159
           +   D  +           G+        E          RQ      +          +
Sbjct: 134 NKSKDKPLVVASRTLFDMAGVTYRAFDMEEAGSRTIKINFRQVPPPFHRSPQQDRACKQT 193

Query: 160 QDNMIGMAGCGSVPITGFISKNQVH 184
            D                  +   H
Sbjct: 194 TDASAAKKSEREENEEEAQQRAGDH 218


>gi|320547474|ref|ZP_08041760.1| competence protein comEB [Streptococcus equinus ATCC 9812]
 gi|320447819|gb|EFW88576.1| competence protein comEB [Streptococcus equinus ATCC 9812]
          Length = 154

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 34/159 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY---------GG---- 51
           S++  FM+ A   S+      +    V  ++VKD  +I  G              G    
Sbjct: 6   SWEDYFMANAELISKRSTCNRA---FVGAVLVKDNRIIATGYNGGVSETDNCSEAGHKME 62

Query: 52  ------CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE+ AL +    G   +G   YVT  PC +      C + +++ GI+++  
Sbjct: 63  DGHCIRTVHAEMNALIQCAKEGISTKGTEIYVTHFPCIN------CTKALLQAGIKKITY 116

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
                  R+    ++ + QKG+   +    E ++ +  +
Sbjct: 117 ---KTAYRMHPFAIELMKQKGVECVQHDVPEVRLGMDDF 152


>gi|332977120|gb|EGK13924.1| guanine deaminase [Desmospora sp. 8437]
          Length = 153

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 24/105 (22%)

Query: 9   RFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
            +M  A+  +    R   G          +IVKDG ++G+GV      +    HAE++A+
Sbjct: 5   HWMQTAIELAYENTRREKGR-----PFGAIIVKDGKIVGKGVNQILATHDPTMHAELEAI 59

Query: 61  EE-----AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
            E     A  +      Y + +PC      P C   I    I RV
Sbjct: 60  REASRTLATSDLSDCELYASGKPC------PMCLAAIYWANIHRV 98


>gi|313680072|ref|YP_004057811.1| tRNA(ile)-lysidine synthetase [Oceanithermus profundus DSM 14977]
 gi|313152787|gb|ADR36638.1| tRNA(Ile)-lysidine synthetase [Oceanithermus profundus DSM 14977]
          Length = 522

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 48/119 (40%), Gaps = 17/119 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
             D R+M  AL               +  ++V++G  +G    A         HAE+ AL
Sbjct: 378 EEDQRWMRRALA--LAREAARRGEVPIGAVVVREGEELGASANAVEARVNATAHAELLAL 435

Query: 61  EEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
             A E A      GAT YVTLEPC      P C   +IE  + RVV   ++P      R
Sbjct: 436 RAAQERAGEKVLPGATLYVTLEPC------PMCLGALIEARVGRVVWATENPKAGAVTR 488


>gi|310790867|gb|EFQ26400.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Glomerella graminicola M1.001]
          Length = 149

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 21/152 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCPHAEVQALE 61
           DA  ++ A+  ++   G +     +   +V  DG ++GRG            H E  AL 
Sbjct: 3   DAEGLAIAIEEAK--TGASEGGVPIGAALVSADGKLLGRGHNRRVQMGSAIHHGETDALF 60

Query: 62  EAGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            +G       +G+T Y TL PC        C    +  GI RVV+  +   +        
Sbjct: 61  NSGRLPGKAYKGSTMYTTLSPCDM------CTGACLLYGISRVVIGENRTFLGGE----A 110

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           +L Q+G+ V  +  +E K  +  ++  + E  
Sbjct: 111 YLKQRGVEVVVLDSAECKALMDKFIAEKPEVW 142


>gi|326692447|ref|ZP_08229452.1| ComE operon protein 2 [Leuconostoc argentinum KCTC 3773]
          Length = 160

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 61/162 (37%), Gaps = 31/162 (19%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP---------- 53
           S+D  F++ A   S      T T   V  ++VK+  +I  G   A  G P          
Sbjct: 7   SWDQYFIAQAAILSTRS---TCTRLHVGAVLVKNNRIIASGYNGAVAGTPHCTDVGDLIV 63

Query: 54  --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  AL +A   G     AT YVT  PC H      C + +++ G+ ++  
Sbjct: 64  DGHCIRAVHAEQNALMQAAQMGISVADATVYVTDVPCVH------CTKLLLQAGVSKINY 117

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
             +  +   +   LQ        V    E+  +I L  ++T 
Sbjct: 118 MRNYRNDPFAEELLQQKQVPLQQVPFSQETANQIDLSRFVTH 159


>gi|301165417|emb|CBW24988.1| putative nucleotide deaminase [Bacteriovorax marinus SJ]
          Length = 158

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCP----HAEVQALEEAGE 65
           MS A+  +      +     +   IV + G ++ +       C     HAE+ A+ EA +
Sbjct: 11  MSVAMDEAYKA--YSIDEVPIGAAIVDESGNILSQCHNEKEHCNDPCGHAEIIAIREACK 68

Query: 66  E-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           +       G T YVTLEPC      P C   +I+  + ++V    DP             
Sbjct: 69  KRGDWRLSGCTIYVTLEPC------PMCLSAMIQARVDKLVFAAYDPKGGAISLNYNLYK 122

Query: 121 QK 122
            K
Sbjct: 123 DK 124


>gi|253989703|ref|YP_003041059.1| hypothetical protein PAU_02223 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781153|emb|CAQ84315.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 193

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 49/150 (32%), Gaps = 30/150 (20%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYGGCP--HAEV 57
           P  +   ++M  A+  ++              +IV    G ++ RGV ++   P  H E+
Sbjct: 40  PEIAKHEKYMREAIEEAKKSAKY-----PFGAVIVNRSSGEILSRGVNSWVKNPILHGEI 94

Query: 58  QALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           QA+         +       Y T EPCS       C   +   GIR V+           
Sbjct: 95  QAINHYVTLYGNQGWNNVALYTTAEPCSM------CMSALAWTGIREVIWGT-------- 140

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
              +  L   GI    +   E      ++ 
Sbjct: 141 --SISGLRNVGIRQIDISAQEIAERASSFY 168


>gi|183602639|ref|ZP_02964003.1| possible cytidine and deoxycytidylate deaminase [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|241191605|ref|YP_002968999.1| Cytosine/adenosine deaminase [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241197010|ref|YP_002970565.1| Cytosine/adenosine deaminase [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218057|gb|EDT88704.1| possible cytidine and deoxycytidylate deaminase [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|240249997|gb|ACS46937.1| Cytosine/adenosine deaminase [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251564|gb|ACS48503.1| Cytosine/adenosine deaminase [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295794597|gb|ADG34132.1| Cytosine/adenosine deaminase [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 169

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 55/155 (35%), Gaps = 23/155 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT--AYGGCP--HAEVQALEE 62
           A  M  AL  +R     ++ +  V  +++   G VIGRG         P  HAE+ A+ E
Sbjct: 22  AEAMGEALAQARMAR--SAGDVPVGAVVLDAHGEVIGRGRNLRERDADPLAHAEIVAMRE 79

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A            T  VTLEPC      P CA   ++  I R+V    D  +   G    
Sbjct: 80  AAAVRGNWNLADCTLVVTLEPC------PMCAGACLQTRIGRIVFGGWDAKLGACGSVWD 133

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVE 147
                 +     +   + E E    L  +   +  
Sbjct: 134 IPRDPHVGHEPEVYGGVCERECTALLAEFFHSRRH 168


>gi|159129710|gb|EDP54824.1| DRAP deaminase, putative [Aspergillus fumigatus A1163]
          Length = 215

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 54/167 (32%), Gaps = 36/167 (21%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV---------KDGIVIGRGVTAY-G 50
           M  S     ++   L  +        TN  V  ++V         KD  ++  G T    
Sbjct: 1   MTASPH-LDYLRQCLSLAERSPPR-PTNFRVGAILVSRKDGDLEFKDDRILSTGYTMELA 58

Query: 51  GCPHAEVQALEEA----------------GEEARGATAYVTLEPCS-HYGRSPPCAQFII 93
           G  HAE   L                    E  R    YVT+EPC      + PC Q II
Sbjct: 59  GNTHAEQCCLSNYAAVHSVPEDKVAEVLPAEPGRKLVMYVTMEPCGKRLSGNVPCVQRII 118

Query: 94  EC------GIRRVVVCVDDPDVRVSGRG-LQWLSQKGIIVDRMMESE 133
                   GI++V   V +P   V      Q ++  G+    +   E
Sbjct: 119 STRAGGRPGIQKVYFGVKEPGTFVGQSEGCQMMTAAGVQWRVVNGLE 165


>gi|329767199|ref|ZP_08258726.1| ComE operon protein 2 [Gemella haemolysans M341]
 gi|328836866|gb|EGF86513.1| ComE operon protein 2 [Gemella haemolysans M341]
          Length = 153

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 56/147 (38%), Gaps = 34/147 (23%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------ 53
           M   S+D  FM+ +   S      T +  SV   IVKD  ++  G      G        
Sbjct: 1   MQRISWDEYFMAQSHLLSLRS---TCSRLSVGATIVKDKRIVSGGYNGSIKGDEHCIDVG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A+ +    G    GAT YVT  PC +      C + II+ GI+
Sbjct: 58  CKVVEGHCVRTIHAEINAILQCSKFGVGTEGATIYVTHFPCLN------CTKSIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGII 125
            +    D  +   +    + L + G++
Sbjct: 112 EICYANDYRNNEYAR---ELLEKSGVV 135


>gi|119481501|ref|XP_001260779.1| cytidine and deoxycytidylate deaminase zinc-binding domain protein
           [Neosartorya fischeri NRRL 181]
 gi|119408933|gb|EAW18882.1| cytidine and deoxycytidylate deaminase zinc-binding domain protein
           [Neosartorya fischeri NRRL 181]
          Length = 215

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 54/167 (32%), Gaps = 36/167 (21%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV---------KDGIVIGRGVTAY-G 50
           M  S     ++   L  +        TN  V  ++V         KD  ++  G T    
Sbjct: 1   MTASPH-LDYLRQCLSLAERSPPR-PTNFRVGAILVSHKDGDLECKDDRILSTGYTMELA 58

Query: 51  GCPHAEVQALEEA----------------GEEARGATAYVTLEPCS-HYGRSPPCAQFII 93
           G  HAE   L                    E  R    YVT+EPC      + PC Q II
Sbjct: 59  GNTHAEQCCLSNYAAVHSVPEDKVAEVLPSEPGRKLVMYVTMEPCGKRLSGNVPCVQRII 118

Query: 94  EC------GIRRVVVCVDDPDVRVSGRG-LQWLSQKGIIVDRMMESE 133
                   GI++V   V +P   V      Q ++  G+    +   E
Sbjct: 119 STREGGRPGIQKVYFGVKEPGTFVGESEGCQMMTAAGVQWRVVNGLE 165


>gi|315222930|ref|ZP_07864809.1| putative ComE operon protein 2 [Streptococcus anginosus F0211]
 gi|315187880|gb|EFU21616.1| putative ComE operon protein 2 [Streptococcus anginosus F0211]
          Length = 164

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 30/119 (25%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
           ++D  F + AL  +      T    SV  +IVKD  VI  G      G            
Sbjct: 16  AWDEYFAAQALLIANRS---TCKRASVGAVIVKDNKVISTGYNGSVSGTEHCIDHECLIV 72

Query: 54  --------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAEV A+ +  E    +G T YVT  PC +      C + +++ G +RVV 
Sbjct: 73  DGHCVRTLHAEVNAILQGAERGIPKGFTVYVTHFPCLN------CTKQLLQVGCKRVVY 125


>gi|227512166|ref|ZP_03942215.1| competence protein ComEB [Lactobacillus buchneri ATCC 11577]
 gi|227084560|gb|EEI19872.1| competence protein ComEB [Lactobacillus buchneri ATCC 11577]
          Length = 167

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 31/135 (22%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
           +D  FM  A+  +      T    SV  +IV+D  +I  G                    
Sbjct: 16  WDQYFMMQAVLLASRS---TCERLSVGAVIVRDKRIIAGGYNGSVAGDDHCIDVGCYLVD 72

Query: 54  -------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE+ A+ +    GE    A  YVT  PC        C + +++ GIRR+   
Sbjct: 73  GHCVRTIHAEMNAILQCAKFGESTDNAEIYVTDFPCLQ------CTKMLLQAGIRRINYL 126

Query: 104 VDDPDVRVSGRGLQW 118
            +  +   + + ++ 
Sbjct: 127 RNYHNDEYAQKLIRL 141


>gi|227495664|ref|ZP_03925980.1| deaminase [Actinomyces coleocanis DSM 15436]
 gi|226830896|gb|EEH63279.1| deaminase [Actinomyces coleocanis DSM 15436]
          Length = 191

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 50/149 (33%), Gaps = 23/149 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAYGGC----PHAEVQALEEAG 64
           FM  A+  +       + +  V  L+V +G  VI  G            HAEV  L  A 
Sbjct: 48  FMRQAMNLAAEAE--RAGDVPVGALLVSEGGEVIATGFNTREAACDPCGHAEVNVLRAAA 105

Query: 65  EEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
            +         T  VTLEPC        CA  I+   + RVV    D      G     +
Sbjct: 106 AKLGTWRFPSYTLVVTLEPC------VMCAGAIVSARVGRVVFGAWDRAAGACGSLRDVV 159

Query: 120 SQKGI-----IVDRMMESEGKIFLHAYLT 143
               +     +   ++E E +  L  +  
Sbjct: 160 RDPRVNHQVEVFSGVLEKECETQLLEFFQ 188


>gi|225573949|ref|ZP_03782594.1| hypothetical protein RUMHYD_02043 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038808|gb|EEG49054.1| hypothetical protein RUMHYD_02043 [Blautia hydrogenotrophica DSM
           10507]
          Length = 164

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 53/149 (35%), Gaps = 34/149 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-------------TAYG 50
           ++D  FM  A + +   +     +  V   IV  D  ++  G               A  
Sbjct: 13  TWDEYFMGVA-QLA--GMRSKDPSSQVGACIVSEDNKILSMGYNGFPIGCSDDDFPWARE 69

Query: 51  GCP---------HAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           G           H+E+ A+    G    GA  YVTL PC+       CA+ II+ GI+ +
Sbjct: 70  GEELETKYLYVTHSELNAILNYRGGSLEGAKLYVTLFPCNE------CAKAIIQSGIKTI 123

Query: 101 VVCVDDP-DVRVSGRGLQWLSQKGIIVDR 128
           V   D   +        + L   G+   +
Sbjct: 124 VYGNDKYANTPAVIASKRMLDASGVRYYQ 152


>gi|124009330|ref|ZP_01694009.1| cytosine deaminase [Microscilla marina ATCC 23134]
 gi|123985107|gb|EAY25051.1| cytosine deaminase [Microscilla marina ATCC 23134]
          Length = 144

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 54/147 (36%), Gaps = 18/147 (12%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEAG 64
           +FM AA+  +            +  +++++G +I +G            H E+  L  AG
Sbjct: 3   KFMEAAIAQAEKSYNEGG--IPIGSVLMRNGEIIAQGHNKRVQEANPILHGEMDCLLNAG 60

Query: 65  --EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                +    Y TL PC     +      I++  I++VVV     + R      +++   
Sbjct: 61  RIGSYKDTVIYSTLMPCYMCAGT------IVQFNIKKVVVG----ESRTFTGARKFMESH 110

Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKR 149
           G+ V  +   +    +  ++  +    
Sbjct: 111 GVEVVDLNLQKCVDMMTRFIDEKPTLW 137


>gi|333023754|ref|ZP_08451818.1| hypothetical protein STTU_1258 [Streptomyces sp. Tu6071]
 gi|332743606|gb|EGJ74047.1| hypothetical protein STTU_1258 [Streptomyces sp. Tu6071]
          Length = 262

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 58/204 (28%), Gaps = 13/204 (6%)

Query: 167 AGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--------LQEHS 218
               S  I+G        +LRA +D ++VG GT   +                   Q  +
Sbjct: 56  HDGRSQGISGPGDMRVFGVLRALADVVVVGAGTARGERYRPAKAREAFAAARAERGQAPA 115

Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD---CRDL 275
               ++     L     +    ++  +++           A RK    ++        + 
Sbjct: 116 AAIAVVSASLDLDFTLPLFTEPVVPTLVLTGAEAPAERVAAARKAGAEVVVAGSGRGAEP 175

Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
            +L   L  RG+   L EGG  +    I +  VD + L  S  +              L 
Sbjct: 176 ARLRAELAARGLRRQLAEGGPDLLGRLIAADTVDELCLTVSPFLTAGEASRIAHAPQALT 235

Query: 336 KNFMCVRRDYFGSD--VCLEYIGK 357
                        D  +   Y+  
Sbjct: 236 TPARLRPASILAEDGFLFTRYVRD 259


>gi|238878198|gb|EEQ41836.1| deoxycytidylate deaminase [Candida albicans WO-1]
          Length = 337

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 48/144 (33%), Gaps = 44/144 (30%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           ++D+ FM  A   +            V C+IV++  V+  G     G P           
Sbjct: 187 TWDSYFMRLA-DLAALRSNCMKR--RVGCVIVRENRVVATGY---NGTPRHLTNCNEGGC 240

Query: 54  -------------------HAEVQALEEAG-EEARG-ATAYVTLEPCSHYGRSPPCAQFI 92
                              HAE  AL EAG +  RG +  Y    PC        C+  I
Sbjct: 241 SRCNKGQGSGASLATCLCLHAEENALLEAGRDRIRGESVLYCNTCPCL------TCSIKI 294

Query: 93  IECGIRRVVVCVDDPDVRVSGRGL 116
           ++ GIR VV          S + +
Sbjct: 295 VQSGIREVVYAQSYSMDLQSHKVM 318


>gi|68482051|ref|XP_715043.1| hypothetical protein CaO19.7243 [Candida albicans SC5314]
 gi|46436646|gb|EAK96005.1| hypothetical protein CaO19.7243 [Candida albicans SC5314]
          Length = 337

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 48/144 (33%), Gaps = 44/144 (30%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           ++D+ FM  A   +            V C+IV++  V+  G     G P           
Sbjct: 187 TWDSYFMRLA-DLAALRSNCMKR--RVGCVIVRENRVVATGY---NGTPRHLTNCNEGGC 240

Query: 54  -------------------HAEVQALEEAG-EEARG-ATAYVTLEPCSHYGRSPPCAQFI 92
                              HAE  AL EAG +  RG +  Y    PC        C+  I
Sbjct: 241 SRCNKGQGSGASLATCLCLHAEENALLEAGRDRIRGESVLYCNTCPCL------TCSIKI 294

Query: 93  IECGIRRVVVCVDDPDVRVSGRGL 116
           ++ GIR VV          S + +
Sbjct: 295 VQSGIREVVYAQSYSMDLQSHKVM 318


>gi|258651669|ref|YP_003200825.1| cytosine deaminase [Nakamurella multipartita DSM 44233]
 gi|258554894|gb|ACV77836.1| Cytosine deaminase [Nakamurella multipartita DSM 44233]
          Length = 153

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 58/151 (38%), Gaps = 24/151 (15%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAE 56
           M  +  DA +++AA+R +R  +      P  A LIV DG V+  G            H E
Sbjct: 1   MSGTPGDADYLAAAVRAARQGLAE-GGIPIGAALIV-DGGVLATGWNKRVQLGSAIRHGE 58

Query: 57  VQALEEAGEEARGATAY------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
              LE AG     AT Y       TL PC        C   I+   I RV+V  +     
Sbjct: 59  TDCLENAGRLP--ATVYARSVMVTTLSPCDM------CTGAILLYKIPRVIVGENQTFYG 110

Query: 111 VSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
                 + L  +G+ V  + + E    + A+
Sbjct: 111 GE----ELLRARGVEVTVLDDPECVAMMTAF 137


>gi|188580489|ref|YP_001923934.1| bifunctional deaminase-reductase domain protein [Methylobacterium
           populi BJ001]
 gi|179343987|gb|ACB79399.1| bifunctional deaminase-reductase domain protein [Methylobacterium
           populi BJ001]
          Length = 234

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 7/115 (6%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA-FRKKNINIIYC--DCRDLKKL 278
           +++DPH KL            AP+++V   D P   LA      I+ I       DL + 
Sbjct: 89  VLIDPHGKLHWTGP---ETYGAPLVMVLGRDVPDAHLAELAADGISYIVSKQPEIDLGRT 145

Query: 279 LTIL-VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
           L  L    GV  L++EGGA    +F+ + LVD I L     + G  G  +  E G
Sbjct: 146 LEALSANFGVRRLILEGGAHTNAAFLKAGLVDEISLVLFPAIGGHSGSQTLFEAG 200


>gi|328883182|emb|CCA56421.1| Cytosine deaminase [Streptomyces venezuelae ATCC 10712]
          Length = 168

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 19/149 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY--GGCP--HAEVQALEE 62
            ++++ AL  +R   G       V   +   DG ++GRG       G P  HAE  A   
Sbjct: 25  RQWLATALAEAR--AGRDEGGVPVGAALYGADGALLGRGHNRRVQDGDPSAHAETAAFRA 82

Query: 63  AGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           AG +   RG T   TL PC +      C+  + + GI RVVV     +      G  WL+
Sbjct: 83  AGRQRSYRGTTMVTTLSPCWY------CSGLVRQFGISRVVVG----EAETFHGGHDWLA 132

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           + G+ V  + + E    +  ++ R     
Sbjct: 133 EHGVEVLVLDDPECAALMREFVVRHPALW 161


>gi|46447463|ref|YP_008828.1| hypothetical protein pc1829 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401104|emb|CAF24553.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 156

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 15/109 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE 65
           +M  A+  +   +      P  AC++ K G ++               HAE+  + EA  
Sbjct: 4   YMRRAIESAYEGIDKDEGGPFGACIVDKQGQILAVTHNTVLKDQDPTCHAEMNCIREAAR 63

Query: 66  EAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
             +     G T + T EPC      P C   I    I +V + V     
Sbjct: 64  RLKTHILSGYTLFTTAEPC------PMCLAAIYWARIEKVYIGVKKECA 106


>gi|156843603|ref|XP_001644868.1| hypothetical protein Kpol_1065p25 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115520|gb|EDO17010.1| hypothetical protein Kpol_1065p25 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 154

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 56/158 (35%), Gaps = 19/158 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG----GCPHA 55
           M    +D   M  A   +          P   CLI   DG ++GRG            H 
Sbjct: 1   MSDGKWDKLGMDVAYEEASKG-YEEGGVPIGGCLINNEDGKILGRGHNMRFQKGSATLHG 59

Query: 56  EVQALEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           E+  LE  G       +  T Y TL PC        C   I+  GI RVVV     +V  
Sbjct: 60  EISTLENCGRLEGKVYKNTTLYTTLSPCDM------CTGAILMYGIPRVVVG---ENVNF 110

Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
              G ++L  +G  V  + +   K  ++ ++  +    
Sbjct: 111 KSPGEEYLKSRGAEVLVVDDERCKSIMNLFIETRPSDW 148


>gi|329770386|ref|ZP_08261768.1| ComE operon protein 2 [Gemella sanguinis M325]
 gi|328836509|gb|EGF86169.1| ComE operon protein 2 [Gemella sanguinis M325]
          Length = 154

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 59/154 (38%), Gaps = 34/154 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------ 53
           M   S+D  FM+ +   S      T +  SV   IVKD  +I  G      G        
Sbjct: 1   MQRISWDEYFMAQSHLLSLRS---TCSRLSVGATIVKDKRIIAGGYNGSIKGDEHCIDVG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A+ +    G    GAT YVT  PC +      C + II+ GI+
Sbjct: 58  CKVIEGHCVRTIHAEINAILQCSKFGVCTEGATIYVTHFPCLN------CTKSIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
            +    D  +   +    + L + G++V ++   
Sbjct: 112 EICYANDYRNNEYAQ---ELLEKSGVVVRKVDYD 142


>gi|123456967|ref|XP_001316215.1| RibD C-terminal domain containing protein [Trichomonas vaginalis
           G3]
 gi|121898915|gb|EAY03992.1| RibD C-terminal domain containing protein [Trichomonas vaginalis
           G3]
          Length = 328

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 73/199 (36%), Gaps = 29/199 (14%)

Query: 191 DAILVGIGTVLADD---PELTCRLNGLQE--------HSPMRIILDPHFKLSLDSKIIKT 239
           DA + G  TV   +   P L      + E         +P  ++ D   K+   +   +T
Sbjct: 36  DAFMCGTKTVTEMNTEQPVLNPDEKDVPEGDFIAKGAKAPFLVVPDSAGKVGWKNNYFET 95

Query: 240 ALLAP---VIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGR-GVTSLLVE 293
             +     + I++E   P      R+ NI+ I    D  D+      L  + G+ +L V 
Sbjct: 96  PYIQKSDVIEILSEKASPQYRNYLRRLNISYIIAGKDHVDVVPAAKALKQKFGINTLGVL 155

Query: 294 GGAAVAHSFINSRLVDSI-ILYRSQIVIGEGGIPS-------PLEEGYLEKNFMCVRRDY 345
           GGA +  SF+ + +VD + I   +    G+G   S       P         F     D 
Sbjct: 156 GGATINWSFVQAGIVDELSICLVAA---GDGANKSLTLFEKAPQIVENSPVEFELKSIDR 212

Query: 346 FGSD-VCLEYIGKNLCLQE 363
              + + L+Y  K    +E
Sbjct: 213 LSRNGLWLKYTPKAARNEE 231


>gi|111021958|ref|YP_704930.1| guanine deaminase [Rhodococcus jostii RHA1]
 gi|110821488|gb|ABG96772.1| possible guanine deaminase [Rhodococcus jostii RHA1]
          Length = 161

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 45/121 (37%), Gaps = 21/121 (17%)

Query: 1   MPVSSFD---ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----C 52
           M  S  D      +  A+  +       + N     + V  DG VI  G  +        
Sbjct: 1   MSQSDVDDVDLAHLRRAIELAD--ETGDAGNRPFGAVAVGADGHVISEGANSVATSADVT 58

Query: 53  PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
            HAE+ A+  A  E R     GAT Y + EPC      P C+  ++  GI RVV      
Sbjct: 59  EHAELDAITTACGEGRTGDLVGATMYASGEPC------PMCSAAMVWAGITRVVYAASSA 112

Query: 108 D 108
           D
Sbjct: 113 D 113


>gi|307202968|gb|EFN82184.1| Deoxycytidylate deaminase [Harpegnathos saltator]
          Length = 181

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 61/177 (34%), Gaps = 41/177 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
           ++D  FM+ A   ++           V   IV  D  +IG G     G P          
Sbjct: 14  AWDEYFMAVAFLSAQRSK---DPYTQVGACIVNNDNKIIGIGY---NGMPIGCSDDVFPW 67

Query: 54  ----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                           HAEV A L +   + +  T YV L PC+       CA+ II+ G
Sbjct: 68  NKGSYSSLDSKYLYVCHAEVNAVLNKNSSDCKDCTIYVALFPCNE------CAKVIIQSG 121

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQ-KGIIVDRMMESEGKIFLHAYLTRQVEKRSHI 152
           IR V+   D    +V     + +    GI   + +    KI ++      + +    
Sbjct: 122 IRTVIYMSDKSSDKVQTVAAKRMFDAAGIKYRQYIPKNKKIEINFDDIDCMNQSPET 178


>gi|317471969|ref|ZP_07931301.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Anaerostipes sp. 3_2_56FAA]
 gi|316900373|gb|EFV22355.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Anaerostipes sp. 3_2_56FAA]
          Length = 170

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 58/160 (36%), Gaps = 34/160 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV-------------TAYG 50
           S+D  FM  AL  ++        +  V   +V D   ++  G                  
Sbjct: 19  SWDQYFMGVALLSAQRSK---DDHTQVGACLVNDQNKILSVGYNGMPTGCHDDDMPWERE 75

Query: 51  GCP---------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           G P         HAE+ A+   G     GA  YVTL PC+       CA+ II+ G++ V
Sbjct: 76  GEPLDTKYFYVCHAELNAILNYGGGSLYGARVYVTLFPCNE------CAKAIIQSGMKEV 129

Query: 101 VVCVDDP-DVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
           +   D   D  ++    +     G+   +    +  I LH
Sbjct: 130 IYMQDKYADDDMTVASKKMFDMAGVKYRQFEPKDQIIELH 169


>gi|241763336|ref|ZP_04761392.1| conserved hypothetical protein [Acidovorax delafieldii 2AN]
 gi|241367488|gb|EER61787.1| conserved hypothetical protein [Acidovorax delafieldii 2AN]
          Length = 242

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 58/153 (37%), Gaps = 18/153 (11%)

Query: 221 RIILDPHFKLSLDSKIIK--TALLAPVI-IVTENDDPVLALAFRKKNINIIYCDCRDL-- 275
            + +D   K+  +S  +       A VI ++T+          RK  I+ I      L  
Sbjct: 88  YVSVDASGKIGWESNTLHYEDRPAAHVIEVLTDKASNAYRDFLRKMKISYIIAGKDQLDC 147

Query: 276 ---KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE- 331
               + L  L    + +L++ GG  +  SF+ + LVD + L  + +  GE    +  E+ 
Sbjct: 148 QLAAEKLKALFK--IETLMLSGGGFINWSFLQAGLVDELSLILAPLADGENKTSTLFEKS 205

Query: 332 ------GYLEKNFMCVRRDYFGSDVCLEYIGKN 358
                   +E     V +   G  + L Y  KN
Sbjct: 206 DFLPERAPVEFALKSVEKGQ-GDSIWLRYTVKN 237


>gi|171679239|ref|XP_001904566.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939245|emb|CAP64473.1| unnamed protein product [Podospora anserina S mat+]
          Length = 230

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 59/162 (36%), Gaps = 34/162 (20%)

Query: 2   PVSSFDAR-FMSAALRFSRWHVGLTSTNP---SVACLIV--KDGIVIGRGVTAY------ 49
           P++  D + +M  AL  ++    L+  +P    V   +V      V+  G +        
Sbjct: 55  PIAPHDHKTYMRYALEQAK----LSPPSPSKFCVGAALVDADANQVLSTGYSEELARDRP 110

Query: 50  --GGCPHAEVQALEE------------AGEEARGATAYVTLEPCSHY-GRSPPCAQFIIE 94
              G  HAE     +            A         Y T+EPC+     +  C + I+ 
Sbjct: 111 NDPGSTHAEHCCFIKVADENGIHDFDIAPVLPPNTVLYTTMEPCNERLSGNRTCVERILG 170

Query: 95  CG--IRRVVVCVDDPDVRVSGRG-LQWLSQKGIIVDRMMESE 133
            G  I+ V V + +P+  +     ++ L   G+ V  + + E
Sbjct: 171 LGSAIKVVYVGIREPNTFIQDNQGIKRLEAAGVKVVLLEDDE 212


>gi|284048049|ref|YP_003398388.1| bifunctional deaminase-reductase domain protein [Acidaminococcus
           fermentans DSM 20731]
 gi|283952270|gb|ADB47073.1| bifunctional deaminase-reductase domain protein [Acidaminococcus
           fermentans DSM 20731]
          Length = 264

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 54/148 (36%), Gaps = 12/148 (8%)

Query: 224 LDPHFKLSLDSKI--IKTALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLL 279
           +D H KL+               V I+TE          RKK I+ + C  D  DL  L 
Sbjct: 96  VDGHGKLAWQENFNEYDGVKSHIVEILTEAASNSYKAFLRKKGISYLICGKDSVDLPLLC 155

Query: 280 TILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS-----PLEEGY 333
             +     V S+++ GGA +  S + + LVD + L  +    G     +     P     
Sbjct: 156 AKIKNVLHVDSVMLGGGAVLNWSMVQAGLVDELSLVMAPAADGSTETQTLFMAKPGITTD 215

Query: 334 LEKNFMCVRRDYFGSD-VCLEY-IGKNL 359
               F  +       D + + Y +GK +
Sbjct: 216 QPVLFKPLEVKIMPDDAIWIRYQVGKKV 243


>gi|313675037|ref|YP_004053033.1| cmp/dcmp deaminase zinc-binding protein [Marivirga tractuosa DSM
           4126]
 gi|312941735|gb|ADR20925.1| CMP/dCMP deaminase zinc-binding protein [Marivirga tractuosa DSM
           4126]
          Length = 160

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 36/129 (27%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M    FD  FM  A+  ++    +      V  ++ K+  +I  G               
Sbjct: 1   MEKPQFDDIFMELAVNLAKRSHCIKR---HVGAVLTKETRIISIGYNGPPAGTHNCDEEF 57

Query: 54  -----------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFII 93
                            HAE  A+  A         +T YVTL PC        CA+ I 
Sbjct: 58  PGKGCGLDSKGSCMLAIHAEQNAIMYAVKNNASVENSTLYVTLSPCL------SCARIIF 111

Query: 94  ECGIRRVVV 102
             GI++V+ 
Sbjct: 112 SMGIKKVIY 120


>gi|258648600|ref|ZP_05736069.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
           tannerae ATCC 51259]
 gi|260851385|gb|EEX71254.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
           tannerae ATCC 51259]
          Length = 145

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 57/151 (37%), Gaps = 38/151 (25%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
            D R++  A  +S            V  LIVKD ++I  G     G P            
Sbjct: 10  LDNRYLRMARIWSENSYCKRR---QVGALIVKDKMIISDGY---NGTPSGFENQCEDELN 63

Query: 54  -------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A   +  +G  + GAT YVT  PC        C++ II+ GI+RV+  
Sbjct: 64  ITKPYVLHAEANAITKIARSGNNSDGATLYVTDAPCIE------CSKLIIQAGIKRVIYG 117

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
                      G++ L +  I V  +  +E 
Sbjct: 118 KKYRLT----DGVELLKRAHIDVQYLPLNEQ 144


>gi|218778327|ref|YP_002429645.1| CMP/dCMP deaminase zinc-binding [Desulfatibacillum alkenivorans
           AK-01]
 gi|218759711|gb|ACL02177.1| CMP/dCMP deaminase zinc-binding [Desulfatibacillum alkenivorans
           AK-01]
          Length = 169

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 19/109 (17%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC------PHAEVQALE- 61
           +FM+ AL  +R    L +    V C++V DG VI +G              HAE+ A+  
Sbjct: 5   QFMNKALELARQA--LEAGEFPVGCILVHDGRVIAQGARVGVAGGGTGELEHAEMVAMAR 62

Query: 62  ----EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               E        T Y T+EPC        C   ++  GI ++V   +D
Sbjct: 63  FENMENAPPPSEVTIYCTMEPCLM------CFGALMIHGITKIVYAYED 105


>gi|318058022|ref|ZP_07976745.1| zinc-binding protein [Streptomyces sp. SA3_actG]
 gi|318076299|ref|ZP_07983631.1| zinc-binding protein [Streptomyces sp. SA3_actF]
          Length = 151

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 60/156 (38%), Gaps = 19/156 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHA 55
           M  +     ++  A+  +R   GL      +   +   DG ++GRG            H 
Sbjct: 1   MLTTEQAQEWLRPAVEEAR--QGLAEGGVPIGAALYGADGALLGRGHNRRVQDADPSSHG 58

Query: 56  EVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           E  A  +AG +   RG T   TL PC +      C+  I + GI RVV+           
Sbjct: 59  ETDAFRKAGRQRTYRGTTMVTTLSPCWY------CSGLIKQFGITRVVIGESTTFKGGE- 111

Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
               WL ++G+ + R+ + E    +  ++ +  +  
Sbjct: 112 ---DWLEEQGVEIIRLTDPECVDLMTEFVEKYPDVW 144


>gi|167911457|ref|ZP_02498548.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           pseudomallei 112]
          Length = 185

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 46/127 (36%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  +IV+   VI RG     G      HAE+ AL  A          G   YVTLEPC 
Sbjct: 54  PVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAALRAAARALRNYRMPGCELYVTLEPCL 113

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  C+  I+   I RVV    DP     G  +       L+    +   ++  E  
Sbjct: 114 M------CSGAIMHARIARVVFGAPDPKTGACGSVVDAFADARLNHHTTVEGGVLADECG 167

Query: 136 IFLHAYL 142
             L ++ 
Sbjct: 168 AVLKSFF 174


>gi|67464322|pdb|1YSD|A Chain A, Yeast Cytosine Deaminase Double Mutant
 gi|67464323|pdb|1YSD|B Chain B, Yeast Cytosine Deaminase Double Mutant
          Length = 161

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 58/155 (37%), Gaps = 19/155 (12%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCPHAEVQ 58
           S +D + M  A   +          P   CLI  KDG V+GRG            H E+ 
Sbjct: 11  SKWDQKGMDIAYEEALLG-YKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEIS 69

Query: 59  ALEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
            LE  G       +  T Y TL PC        C   II  GI R VV     +V    +
Sbjct: 70  TLENCGRLEGKVYKDTTLYTTLSPCDM------CTGAIIMYGIPRCVVG---ENVNFKSK 120

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           G ++L  +G  V  + +   K  +  ++  + +  
Sbjct: 121 GEKYLQTRGHEVVVVDDERCKKLMKQFIDERPQDW 155


>gi|218885276|ref|YP_002434597.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756230|gb|ACL07129.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 175

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 37/102 (36%), Gaps = 16/102 (15%)

Query: 30  SVACLIV-KDGIVIGRGVTAYGG----CPHAEVQALEEA-----GEEARGATAYVTLEPC 79
            V  ++V + G +IG G            HAE+ AL EA          GA   VTLEPC
Sbjct: 50  PVGAVVVDRQGRIIGTGHNTPVASHDPSAHAEMVALREACRNTGNYRLDGAVLVVTLEPC 109

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                   CA  ++   +  VV    D         L  L Q
Sbjct: 110 LM------CAGAMVHARVAGVVYGAPDLKAGAVTSCLDALDQ 145


>gi|315282387|ref|ZP_07870809.1| ComE operon protein 2 [Listeria marthii FSL S4-120]
 gi|313613969|gb|EFR87691.1| ComE operon protein 2 [Listeria marthii FSL S4-120]
          Length = 186

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 62/173 (35%), Gaps = 40/173 (23%)

Query: 1   MPVSSFDARFMSAALRFSRWHV---GLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP--- 53
           M   ++D  FM      ++ H+     T T   V   IV+D  +I  G      G     
Sbjct: 1   MQRIAWDQFFM------AQSHLISSRSTCTRLMVGATIVRDKRIIAGGYNGSIAGGDHCA 54

Query: 54  ---------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                          HAE+ A+ +    G     A  YVT  PC        C + II+ 
Sbjct: 55  EHGCYVVDGHCIRTIHAEMNAILQCAKFGATTDNAELYVTHFPCL------ACTKSIIQA 108

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
           GI++V    D  +   +   L+     G+ + ++   E  + ++ +   ++  
Sbjct: 109 GIKKVYFAKDYKNHSYA---LELFKIAGVELQKVEFDESVLQVNNWNEEKMHT 158


>gi|261345369|ref|ZP_05973013.1| guanine deaminase [Providencia rustigianii DSM 4541]
 gi|282566412|gb|EFB71947.1| guanine deaminase [Providencia rustigianii DSM 4541]
          Length = 154

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 17/113 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
           D +F+  A+  +  +V           ++V DG V+  GV           HAE+ AL +
Sbjct: 3   DNQFLQQAILLATENVNAGGR--PFGAVVVYDGSVVATGVNQMLERNDPTAHAELLALRQ 60

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           AGE            Y + +PC      P C   +   GI R+V    + D  
Sbjct: 61  AGEVLGKVRLDDCVVYASGQPC------PMCLAAMRMAGISRIVYAYSNQDAE 107


>gi|330833249|ref|YP_004402074.1| deoxycytidylate deaminase [Streptococcus suis ST3]
 gi|329307472|gb|AEB81888.1| deoxycytidylate deaminase [Streptococcus suis ST3]
          Length = 155

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 55/149 (36%), Gaps = 33/149 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
           ++D  F + AL  +      T     V  ++VKD  VI  G                   
Sbjct: 7   AWDEYFAAQALLIANRA---TCKRAKVGAVLVKDNKVIATGYNGSVSGTEHCLDQECLMI 63

Query: 48  --AYGGCPHAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                   HAEV A+ +  E    +G TAYVT  PC +      C++ +++ G +RVV  
Sbjct: 64  DGHCARTLHAEVNAILQGAERGIPKGFTAYVTHFPCLN------CSKQLLQVGCKRVVYI 117

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
            +    R+         +KG  +  +   
Sbjct: 118 NEY---RMDDYAQYLYKEKGCELVHLPLE 143


>gi|319937282|ref|ZP_08011689.1| deoxycytidylate deaminase [Coprobacillus sp. 29_1]
 gi|319807648|gb|EFW04241.1| deoxycytidylate deaminase [Coprobacillus sp. 29_1]
          Length = 154

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 52/151 (34%), Gaps = 34/151 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
           S+D  FM  A   +         N  V   IV  +  ++G G                  
Sbjct: 6   SWDQYFMGVAKLSAYRSK---DPNTQVGACIVTPEHKIVGVGYNGLPWGCEDDEFPWANR 62

Query: 47  ------TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                 T Y    HAE+ A+  + ++  G   YV+L PC        C + II+ GI+ +
Sbjct: 63  EGDMYDTKYPYVVHAELNAILNSIQKLVGCRIYVSLFPCHE------CVKAIIQSGIKEI 116

Query: 101 VVCVDDP-DVRVSGRGLQWLSQKGIIVDRMM 130
           V   D   D        + L   G+   +M 
Sbjct: 117 VYEDDKYSDTPSDKAAKRMLDAAGVKYTKMN 147


>gi|317485386|ref|ZP_07944265.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bilophila wadsworthia 3_1_6]
 gi|316923345|gb|EFV44552.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bilophila wadsworthia 3_1_6]
          Length = 189

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 36/121 (29%), Gaps = 22/121 (18%)

Query: 11  MSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA 63
           M  A+  +R     G       V  LIV   G ++               HAE+ A+  A
Sbjct: 47  MLQAIAKARQAPQQGEV----PVGALIVDPAGTILAAEHNQPITLSDPSAHAEIMAMRSA 102

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G         G    VTLEPC        C   I+   +  VV    D            
Sbjct: 103 GAVLGNYRLEGCILVVTLEPCLM------CTGAIVHARLAGVVYGAADNKAGAVESCFNG 156

Query: 119 L 119
           L
Sbjct: 157 L 157


>gi|253752314|ref|YP_003025455.1| cytidine and deoxycytidylate deaminase [Streptococcus suis SC84]
 gi|253754140|ref|YP_003027281.1| cytidine and deoxycytidylate deaminase [Streptococcus suis P1/7]
 gi|253756074|ref|YP_003029214.1| cytidine and deoxycytidylate deaminase [Streptococcus suis BM407]
 gi|251816603|emb|CAZ52241.1| putative cytidine and deoxycytidylate deaminase [Streptococcus suis
           SC84]
 gi|251818538|emb|CAZ56369.1| putative cytidine and deoxycytidylate deaminase [Streptococcus suis
           BM407]
 gi|251820386|emb|CAR46982.1| putative cytidine and deoxycytidylate deaminase [Streptococcus suis
           P1/7]
 gi|319758710|gb|ADV70652.1| putative cytidine and deoxycytidylate deaminase [Streptococcus suis
           JS14]
          Length = 155

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 55/149 (36%), Gaps = 33/149 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
           ++D  F + AL  +      T     V  ++VKD  VI  G                   
Sbjct: 7   AWDEYFAAQALLIANRA---TCKRAKVGAVLVKDNKVIATGYNGSVSGTEHCLDQECLMI 63

Query: 48  --AYGGCPHAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                   HAEV A+ +  E    +G TAYVT  PC +      C++ +++ G +RVV  
Sbjct: 64  DGHCARTLHAEVNAILQGAERGIPKGFTAYVTHFPCLN------CSKQLLQVGCKRVVYI 117

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
            +    R+         +KG  +  +   
Sbjct: 118 NEY---RMDDYAQYLYKEKGCELVHLPLE 143


>gi|167919469|ref|ZP_02506560.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           pseudomallei BCC215]
          Length = 198

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 49/142 (34%), Gaps = 20/142 (14%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  +IV+   VI RG     G      HAE+ AL  A          G   YVTLEPC 
Sbjct: 54  PVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAALRAAARALRNYRMPGCELYVTLEPCL 113

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  C+  I+   I RVV    DP     G  +       L+    +   ++  E  
Sbjct: 114 M------CSGAIMHARIARVVFGAPDPKTGACGSVVDAFADARLNHHTTVEGGVLADECG 167

Query: 136 IFLHAYLTRQVEKRSHITLKIA 157
             L ++  ++ +          
Sbjct: 168 AVLKSFFAQRRQAVREARRAQQ 189


>gi|119961232|ref|YP_946898.1| cytosine deaminase [Arthrobacter aurescens TC1]
 gi|119948091|gb|ABM07002.1| Cytosine deaminase [Arthrobacter aurescens TC1]
          Length = 150

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 45/126 (35%), Gaps = 16/126 (12%)

Query: 30  SVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAGEEA--RGATAYVTLEPCSHYG 83
            +   + + G VI  G       G P  H E+ AL  AG +   R  T Y TL PC+   
Sbjct: 29  PIGAALARGGKVIASGHNERVQHGDPIAHGEMSALRAAGRQTSYRDTTLYTTLAPCAMCT 88

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT 143
            +      II+  I RVVV   +            L  +G+ V  + +      +  +  
Sbjct: 89  GT------IIQFKIPRVVVGEAETFPG----EFDLLRSRGVEVVVLDDPRCVDMMRTFQE 138

Query: 144 RQVEKR 149
              E  
Sbjct: 139 EHPELW 144


>gi|321465150|gb|EFX76153.1| hypothetical protein DAPPUDRAFT_306296 [Daphnia pulex]
          Length = 171

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 55/171 (32%), Gaps = 30/171 (17%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTA----YGGCPHAEV 57
           +S     +M  A   +R    L+     V C++  +G  +IG G            HAE+
Sbjct: 1   MSELATCYMDRAFELAREA--LSVGEVPVGCVLHLEGYGIIGEGRNRVNETKNATRHAEL 58

Query: 58  QALEEAGEEARGAT------------AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           +A++ A    +  T             +V +EPC        CA  +   G  RV     
Sbjct: 59  EAIDSALLWIKKNTSESYSQVFGKTEVWVNVEPCIQ------CAGALQILGFARVYYGCS 112

Query: 106 DPDVRVSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSH 151
           +      G  L         Q+  I   +  +E    L  +   +     +
Sbjct: 113 NERFGGCGSVLDVCEKDKRFQRLQIQGGIRANEAIELLKDFYRCENPNAPN 163


>gi|257126237|ref|YP_003164351.1| CMP/dCMP deaminase zinc-binding [Leptotrichia buccalis C-1013-b]
 gi|257050176|gb|ACV39360.1| CMP/dCMP deaminase zinc-binding [Leptotrichia buccalis C-1013-b]
          Length = 161

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 32/160 (20%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVA-CLIVKDGIVIGRGV----------------- 46
           S+D  FM  A       +     +  V  C+I +D  +IG G                  
Sbjct: 9   SWDEYFMGIAF---LSGMRSKDPSTQVGACIIDEDKKIIGIGYNGFPMGSSDDSMPWDKD 65

Query: 47  -----TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                T Y    HAE+ A+  + +  + +T YVT  PC+       CA+ I++ GI++V+
Sbjct: 66  GEFLDTKYPYVVHAELNAILNSIKSLKNSTIYVTHFPCNE------CAKAIVQSGIKKVI 119

Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
              D      S +  + + +   +  + +E E ++    +
Sbjct: 120 YFSDKHKSLDSTKASKRIFENAQVETKHLEIEKEVINIQF 159


>gi|296195104|ref|XP_002745234.1| PREDICTED: deoxycytidylate deaminase-like [Callithrix jacchus]
          Length = 178

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 51/148 (34%), Gaps = 35/148 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        N  V   IV  +  ++G G                  
Sbjct: 14  EWPEYFMAVAFLSAQRSK---DPNSQVGACIVNSENKIVGIGYNGMPNGCSDDLLPWRRT 70

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G T YV L PC+       CA+ II+ GIR 
Sbjct: 71  AENKLDTKYPYVCHAELNAIMNKNSTDVKGCTMYVALFPCNE------CAKLIIQAGIRE 124

Query: 100 VVVCVD-DPDVRVSGRGLQWLSQKGIIV 126
           V+   D   D   +          G+  
Sbjct: 125 VIFMSDKYHDSDEATAARLMFDMAGVAF 152


>gi|282880633|ref|ZP_06289339.1| guanine deaminase [Prevotella timonensis CRIS 5C-B1]
 gi|281305528|gb|EFA97582.1| guanine deaminase [Prevotella timonensis CRIS 5C-B1]
          Length = 156

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 36/108 (33%), Gaps = 17/108 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE- 65
           M  A+  S   V           +I K G +I          +    HAEV A+ +A + 
Sbjct: 8   MRRAIALSEESVLSGGG--PFGAVIAKGGNIIAEASNTVTIDHDPTAHAEVNAIRKATQK 65

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
               +  G   Y + EPC      P C   I    + R+    +  D 
Sbjct: 66  LGTFDLTGCDIYTSCEPC------PMCLGAIYWAHLDRIFYANNRKDA 107


>gi|224011555|ref|XP_002295552.1| dCMP deaminase [Thalassiosira pseudonana CCMP1335]
 gi|209583583|gb|ACI64269.1| dCMP deaminase [Thalassiosira pseudonana CCMP1335]
          Length = 176

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 49/146 (33%), Gaps = 35/146 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGV----------------- 46
           S+D  FM+ +   ++        N  V   IV     +IG G                  
Sbjct: 22  SWDDYFMAVSFLSAQRSK---DPNTQVGACIVDTNKSIIGIGYNGFPRGCSDEHLPWARH 78

Query: 47  -----TAYGG-CPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                        HAEV A L +     RGAT YV L PC+       C++ II+ GIR 
Sbjct: 79  ASCDLHKKYPYVVHAEVNAILNKCSASVRGATIYVALFPCNE------CSKVIIQSGIRE 132

Query: 100 VVVCVD-DPDVRVSGRGLQWLSQKGI 124
           VV   D   D              G+
Sbjct: 133 VVYLNDFYHDTDACRASRIMFKMAGV 158


>gi|118586639|ref|ZP_01544079.1| cytidine/deoxycytidylate deaminase [Oenococcus oeni ATCC BAA-1163]
 gi|118432954|gb|EAV39680.1| cytidine/deoxycytidylate deaminase [Oenococcus oeni ATCC BAA-1163]
          Length = 156

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 39/123 (31%), Gaps = 17/123 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL+ ++           +  ++VKD  VI               HAE   +E A
Sbjct: 9   EEFMQLALKQAQTA--FDEGEVPIGAVLVKDNQVIAADHNRKEQSGIATAHAEKLVIEGA 66

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       + +VT+EPC        C   II+  I R+     DP           
Sbjct: 67  NRSLGDWRLNDCSLFVTIEPC------VMCCGAIIQSRIPRLFYGAADPKFGGVSSLYHL 120

Query: 119 LSQ 121
           L  
Sbjct: 121 LED 123


>gi|284031090|ref|YP_003381021.1| bifunctional deaminase-reductase domain-containing protein
           [Kribbella flavida DSM 17836]
 gi|283810383|gb|ADB32222.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
           DSM 17836]
          Length = 264

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 5/128 (3%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLL 279
           +++D   ++  + K         +++V            R++ I  +       DL   L
Sbjct: 116 VVVDGRGRIRWEMK--SQGEYDVLVLVARATSTDHLAYLRRERIAYLVAGEHQVDLGAAL 173

Query: 280 TILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
             +  + GVT ++   G  +  + + + LVD + L  S  V+G  G P+  +   L  + 
Sbjct: 174 RRMREQLGVTCVVSTAGGGLNGALLRADLVDELHLLVSPSVVGGLGTPTAFDGPQLGDDE 233

Query: 339 MCVRRDYF 346
              R    
Sbjct: 234 APRRLRLL 241


>gi|325679436|ref|ZP_08159020.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Ruminococcus albus 8]
 gi|324108864|gb|EGC03096.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Ruminococcus albus 8]
          Length = 159

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 53/157 (33%), Gaps = 33/157 (21%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCP------ 53
           M   S+D  F+  A   S         N  V   IV +   ++  G              
Sbjct: 5   MNYISWDDYFLGIA-ELS--AARSKDPNTQVGACIVSEENKILSVGYNGMPAGCNDDEMP 61

Query: 54  ----------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                           HAE+ A+  +  + +G+  YV+L PC+       CA+ II+ GI
Sbjct: 62  WGRKGDFLDTKYPFVCHAELNAVLNSNHDLKGSRIYVSLFPCNE------CAKAIIQSGI 115

Query: 98  RRVVVCVDDP-DVRVSGRGLQWLSQKGIIVDRMMESE 133
           + V+   D   D   +          G+   ++ +  
Sbjct: 116 KEVIYTCDKYADTDGTKASKMMFKMAGVKTRQIKQEH 152


>gi|240849921|ref|YP_002971310.1| cytidine and deoxycytidylate deaminase [Bartonella grahamii as4aup]
 gi|240267044|gb|ACS50632.1| cytidine and deoxycytidylate deaminase [Bartonella grahamii as4aup]
          Length = 148

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 45/117 (38%), Gaps = 22/117 (18%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56
           M ++      M  AL  ++W          V  +I +   +I R       AY    HAE
Sbjct: 1   MTLTP-----MEIALLEAQWAA--KKDEVPVGAVITRGKAIIARAGNFIKSAYDPTGHAE 53

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           ++A+  A      E       YVTLEPC+       CA  I    IRR+    +DP 
Sbjct: 54  MRAIRMACETLQSERLPDCDLYVTLEPCAM------CAAAISFARIRRLYYATNDPK 104


>gi|146319276|ref|YP_001198988.1| deoxycytidylate deaminase [Streptococcus suis 05ZYH33]
 gi|146321480|ref|YP_001201191.1| deoxycytidylate deaminase [Streptococcus suis 98HAH33]
 gi|145690082|gb|ABP90588.1| Deoxycytidylate deaminase [Streptococcus suis 05ZYH33]
 gi|145692286|gb|ABP92791.1| Deoxycytidylate deaminase [Streptococcus suis 98HAH33]
 gi|292558909|gb|ADE31910.1| Deoxycytidylate deaminase [Streptococcus suis GZ1]
          Length = 161

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 55/149 (36%), Gaps = 33/149 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
           ++D  F + AL  +      T     V  ++VKD  VI  G                   
Sbjct: 13  AWDEYFAAQALLIANRA---TCKRAKVGAVLVKDNKVIATGYNGSVSGTEHCLDQECLMI 69

Query: 48  --AYGGCPHAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                   HAEV A+ +  E    +G TAYVT  PC +      C++ +++ G +RVV  
Sbjct: 70  DGHCARTLHAEVNAILQGAERGIPKGFTAYVTHFPCLN------CSKQLLQVGCKRVVYI 123

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
            +    R+         +KG  +  +   
Sbjct: 124 NEY---RMDDYAQYLYKEKGCELVHLPLE 149


>gi|126735087|ref|ZP_01750833.1| hypothetical protein RCCS2_14459 [Roseobacter sp. CCS2]
 gi|126715642|gb|EBA12507.1| hypothetical protein RCCS2_14459 [Roseobacter sp. CCS2]
          Length = 148

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 43/122 (35%), Gaps = 17/122 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA-- 63
           +M+ AL  +R  V        V  +IV    V+ +             HAEV A+  A  
Sbjct: 6   YMNVALDEAR--VAGARGEVPVGAVIVGPDGVVAQAGNQTRERSDPTAHAEVLAIRAACA 63

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
               E       YVTLEPC      P CA  I    I R+     DP      +G +  S
Sbjct: 64  ALGQERLIRCDLYVTLEPC------PMCAAAISNARIARLYYGAADPKSGGVAQGPRVFS 117

Query: 121 QK 122
             
Sbjct: 118 HA 119


>gi|312887290|ref|ZP_07746893.1| Guanine deaminase [Mucilaginibacter paludis DSM 18603]
 gi|311300248|gb|EFQ77314.1| Guanine deaminase [Mucilaginibacter paludis DSM 18603]
          Length = 170

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 45/117 (38%), Gaps = 16/117 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG-RGVT---AYGGCPHAEVQ 58
           V++   +FM+ A++ S  ++      P    +IVK+G VI   G T   +     HAEV 
Sbjct: 6   VNAEHLKFMNMAVKCSSDNLKTNLGGP-FGAIIVKNGKVIACEGNTVTSSNDPTAHAEVN 64

Query: 59  ALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           A+  A       +  G   Y + EPC      P C   I    I  V       D  
Sbjct: 65  AIRAACQALKSPDLEGCIMYTSCEPC------PMCTSAIYWAQINVVYYGNTKTDAE 115


>gi|301756412|ref|XP_002914055.1| PREDICTED: deoxycytidylate deaminase-like [Ailuropoda melanoleuca]
          Length = 178

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 51/148 (34%), Gaps = 35/148 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        N  V   IV  +  ++G G                  
Sbjct: 14  EWPEYFMAVAFLSAQRSK---DPNSQVGACIVNAENKIVGIGYNGMPNGCSDDLLPWRRT 70

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G T YV L PC+       CA+ II+ GI+ 
Sbjct: 71  AESKLDTKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNE------CAKLIIQAGIKE 124

Query: 100 VVVCVD-DPDVRVSGRGLQWLSQKGIIV 126
           V+   D   D        +     G+  
Sbjct: 125 VIFISDKYHDSDEMTAARRLFDMAGVAF 152


>gi|281354625|gb|EFB30209.1| hypothetical protein PANDA_001894 [Ailuropoda melanoleuca]
          Length = 182

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 51/148 (34%), Gaps = 35/148 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        N  V   IV  +  ++G G                  
Sbjct: 19  EWPEYFMAVAFLSAQRSK---DPNSQVGACIVNAENKIVGIGYNGMPNGCSDDLLPWRRT 75

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G T YV L PC+       CA+ II+ GI+ 
Sbjct: 76  AESKLDTKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNE------CAKLIIQAGIKE 129

Query: 100 VVVCVD-DPDVRVSGRGLQWLSQKGIIV 126
           V+   D   D        +     G+  
Sbjct: 130 VIFISDKYHDSDEMTAARRLFDMAGVAF 157


>gi|76811739|ref|YP_333930.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           pseudomallei 1710b]
 gi|121599544|ref|YP_993329.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           mallei SAVP1]
 gi|124383998|ref|YP_001029233.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           mallei NCTC 10229]
 gi|126450143|ref|YP_001080836.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           mallei NCTC 10247]
 gi|167000596|ref|ZP_02266407.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           mallei PRL-20]
 gi|238562434|ref|ZP_04610071.1| tRNA-specific adenosine deaminase [Burkholderia mallei GB8 horse 4]
 gi|254177488|ref|ZP_04884143.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           mallei ATCC 10399]
 gi|254189248|ref|ZP_04895759.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254200108|ref|ZP_04906474.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           mallei FMH]
 gi|254206447|ref|ZP_04912799.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           mallei JHU]
 gi|254259652|ref|ZP_04950706.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           pseudomallei 1710a]
 gi|254358144|ref|ZP_04974417.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           mallei 2002721280]
 gi|76581192|gb|ABA50667.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           pseudomallei 1710b]
 gi|121228354|gb|ABM50872.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           mallei SAVP1]
 gi|124292018|gb|ABN01287.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           mallei NCTC 10229]
 gi|126243013|gb|ABO06106.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           mallei NCTC 10247]
 gi|147749704|gb|EDK56778.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           mallei FMH]
 gi|147753890|gb|EDK60955.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           mallei JHU]
 gi|148027271|gb|EDK85292.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           mallei 2002721280]
 gi|157936927|gb|EDO92597.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160698527|gb|EDP88497.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           mallei ATCC 10399]
 gi|238522629|gb|EEP86072.1| tRNA-specific adenosine deaminase [Burkholderia mallei GB8 horse 4]
 gi|243063523|gb|EES45709.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           mallei PRL-20]
 gi|254218341|gb|EET07725.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           pseudomallei 1710a]
          Length = 198

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 49/142 (34%), Gaps = 20/142 (14%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  +IV+   VI RG     G      HAE+ AL  A          G   YVTLEPC 
Sbjct: 54  PVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAALRAAARALRNYRMPGCELYVTLEPCL 113

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  C+  I+   I RVV    DP     G  +       L+    +   ++  E  
Sbjct: 114 M------CSGAIMHARIARVVFGAPDPKTGACGSVVDAFADARLNHHTTVEGGVLADECG 167

Query: 136 IFLHAYLTRQVEKRSHITLKIA 157
             L ++  ++ +          
Sbjct: 168 AVLKSFFAQRRQAVREARRAQQ 189


>gi|325191112|emb|CCA25598.1| SUMO ligase putative [Albugo laibachii Nc14]
          Length = 196

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 40/127 (31%), Gaps = 19/127 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
             D  FM  AL  +     L      V C+ V    +I               HAE+ A+
Sbjct: 9   DKDVGFMREALEEAERA--LVRGEVPVGCVAVYQNQIISFASNRTNELCNATKHAELVAI 66

Query: 61  -------EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                         +  T YVT EPC        CA  +++C + RVV    +      G
Sbjct: 67  DYIVSNYNNTRAIFQETTFYVTCEPCIM------CAAALLQCKVVRVVFGCQNFRFGGCG 120

Query: 114 RGLQWLS 120
             L    
Sbjct: 121 SVLSLHE 127


>gi|212528774|ref|XP_002144544.1| deoxycytidylate deaminase, putative [Penicillium marneffei ATCC
           18224]
 gi|210073942|gb|EEA28029.1| deoxycytidylate deaminase, putative [Penicillium marneffei ATCC
           18224]
          Length = 354

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 46/149 (30%), Gaps = 41/149 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-- 53
           ++D  FM  A   +            V C+IV+D  VI  G             GGCP  
Sbjct: 191 TWDQYFMQLA-SLAAQRSNCMKR--RVGCVIVRDRRVISTGYNGTPRNITNCNEGGCPRC 247

Query: 54  ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                           HAE  AL EAG E    GA  Y    PC        C   I + 
Sbjct: 248 NRGEGGGAGLSTCLCIHAEENALLEAGRERIREGAILYCDTCPCL------TCTVKIAQV 301

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           GI  VV         +       L   G+
Sbjct: 302 GISEVVY---SKSYNMDKESAAILKAAGV 327


>gi|163856878|ref|YP_001631176.1| putative zinc-binding hydrolase [Bordetella petrii DSM 12804]
 gi|163260606|emb|CAP42908.1| putative zinc-binding hydrolase [Bordetella petrii]
          Length = 164

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 37/98 (37%), Gaps = 16/98 (16%)

Query: 30  SVACLIVKD-GIVIGRGV----TAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
            V  ++V   G V+G G     T      HAE+ AL  A          G + YVTLEPC
Sbjct: 33  PVGAVVVDAQGQVLGAGYNRTITDSDPTAHAEIVALRAAARRLGNYRLPGVSLYVTLEPC 92

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
                   C   ++   + RVV    DP     G  L 
Sbjct: 93  ------VMCIGAMLHARLARVVYGAADPKTGACGSVLD 124


>gi|94263921|ref|ZP_01287724.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [delta
           proteobacterium MLMS-1]
 gi|94264246|ref|ZP_01288041.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [delta
           proteobacterium MLMS-1]
 gi|93455357|gb|EAT05561.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [delta
           proteobacterium MLMS-1]
 gi|93455666|gb|EAT05845.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [delta
           proteobacterium MLMS-1]
          Length = 184

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 32/128 (25%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG---VTAYGGCP------ 53
           +++ D ++M  AL  +R    L +    V  +I   G ++  G    +     P      
Sbjct: 1   MTTTDEKWMGMALDEARGA--LAAGEFPVGAIIAHQGQMVASGRRQHSRGAAGPVAAPDT 58

Query: 54  ----------HAEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                     HAE+ AL +        + RG T Y TLEPC        C   ++  G+R
Sbjct: 59  TATEVANELDHAEMLALRQLLSRHPTADRRGLTLYATLEPCLM------CYAALLLNGVR 112

Query: 99  RVVVCVDD 106
           R+V   +D
Sbjct: 113 RIVYAYED 120


>gi|291548233|emb|CBL21341.1| Deoxycytidylate deaminase [Ruminococcus sp. SR1/5]
          Length = 164

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 51/147 (34%), Gaps = 34/147 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-------------TAYG 50
           S+D  FM  A+      +     +  V   IV  D  ++  G                  
Sbjct: 13  SWDEYFMGVAM---LSGMRSKDPHSQVGACIVSEDNKILSMGYNGFPKGCSDDEFPWGRE 69

Query: 51  GCP---------HAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           G P         H+E+ A+    G    GA  YV+L PC+       CA+ II+ GIR +
Sbjct: 70  GDPLDTKYLYVTHSELNAILNYRGGSLEGAKLYVSLFPCNE------CAKAIIQAGIRTI 123

Query: 101 VVCVDDP-DVRVSGRGLQWLSQKGIIV 126
           V   D   D        + L   G+  
Sbjct: 124 VYDCDKYADTPSVIASKKMLDAAGVRY 150


>gi|225016877|ref|ZP_03706069.1| hypothetical protein CLOSTMETH_00789 [Clostridium methylpentosum
           DSM 5476]
 gi|224950366|gb|EEG31575.1| hypothetical protein CLOSTMETH_00789 [Clostridium methylpentosum
           DSM 5476]
          Length = 236

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 54/148 (36%), Gaps = 12/148 (8%)

Query: 222 IILDPHFKLSLDSKIIKTALL--APVI-IVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
           + +D   ++  +S   + A    A VI I+TE          RK+ ++ I      L   
Sbjct: 87  VSVDTQGEIGWESGTFRKAGRPDAHVIEILTEQAPAAYRAYLRKRGVSYILAGSEALDSR 146

Query: 279 L--TILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI-----PSPLE 330
           L    L    G+ +LL+ GG  +  +F+    VD + L  +    G+         S L 
Sbjct: 147 LAAEKLHQMFGIHTLLICGGGTINWTFLQQGAVDELSLLIAPTADGDPDSVTVFEKSVLL 206

Query: 331 EGYLEKNFMCVRRDYFGSD-VCLEYIGK 357
                  F   + +    D + L Y  K
Sbjct: 207 PPSAPAVFQLKKIERLNGDGIWLVYSVK 234


>gi|118586582|ref|ZP_01544023.1| cytidine/deoxycytidylate deaminase [Oenococcus oeni ATCC BAA-1163]
 gi|118432961|gb|EAV39686.1| cytidine/deoxycytidylate deaminase [Oenococcus oeni ATCC BAA-1163]
          Length = 157

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 16/106 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           D+ +M  A+  +  ++ L    P    +IV+D  VI               HAE+ A+ +
Sbjct: 3   DSVYMKLAIEQANENIVLKEGGP-FGAVIVRDQEVICAAHNMVLANLDPTAHAEIIAIRK 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           A +     +    T Y +  PC      P C    I   I+ V   
Sbjct: 62  ACKVLATRDLSDCTLYTSAYPC------PMCLSATIWANIKEVRYG 101


>gi|254198049|ref|ZP_04904471.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           pseudomallei S13]
 gi|169654790|gb|EDS87483.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           pseudomallei S13]
          Length = 198

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 49/142 (34%), Gaps = 20/142 (14%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  +IV+   VI RG     G      HAE+ AL  A          G   YVTLEPC 
Sbjct: 54  PVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAALRAAARALRNYRMPGCELYVTLEPCL 113

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  C+  I+   I RVV    DP     G  +       L+    +   ++  E  
Sbjct: 114 M------CSGAIMHARIARVVFGAPDPKTGACGSVVDAFADARLNHHTTVEGGVLADECG 167

Query: 136 IFLHAYLTRQVEKRSHITLKIA 157
             L ++  ++ +          
Sbjct: 168 AVLKSFFAQRRQAVREARRAQQ 189


>gi|149185197|ref|ZP_01863514.1| CMP/dCMP deaminase, zinc-binding protein [Erythrobacter sp. SD-21]
 gi|148831308|gb|EDL49742.1| CMP/dCMP deaminase, zinc-binding protein [Erythrobacter sp. SD-21]
          Length = 142

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 15/101 (14%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG-----EEARGATAYVTLEPCS 80
            V  +I +DG +I               HAE+ A+  A      E       +VTLEPC+
Sbjct: 18  PVGAVITRDGAIIAEAHNTPRETCDPTAHAEILAIRRAAEALGQERLTTCELWVTLEPCA 77

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                  CA  I+   + +V     DP       G +   Q
Sbjct: 78  M------CAGAIVHARLAKVYYGASDPKGGAVEHGARVFEQ 112


>gi|53723703|ref|YP_103157.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           mallei ATCC 23344]
 gi|52427126|gb|AAU47719.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           mallei ATCC 23344]
          Length = 162

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 49/142 (34%), Gaps = 20/142 (14%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  +IV+   VI RG     G      HAE+ AL  A          G   YVTLEPC 
Sbjct: 18  PVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAALRAAARALRNYRMPGCELYVTLEPCL 77

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  C+  I+   I RVV    DP     G  +       L+    +   ++  E  
Sbjct: 78  M------CSGAIMHARIARVVFGAPDPKTGACGSVVDAFADARLNHHTTVEGGVLADECG 131

Query: 136 IFLHAYLTRQVEKRSHITLKIA 157
             L ++  ++ +          
Sbjct: 132 AVLKSFFAQRRQAVREARRAQQ 153


>gi|254297249|ref|ZP_04964702.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           pseudomallei 406e]
 gi|157807925|gb|EDO85095.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           pseudomallei 406e]
          Length = 198

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 49/142 (34%), Gaps = 20/142 (14%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  +IV+   VI RG     G      HAE+ AL  A          G   YVTLEPC 
Sbjct: 54  PVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAALRAAARALRNYRMPGCELYVTLEPCL 113

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  C+  I+   I RVV    DP     G  +       L+    +   ++  E  
Sbjct: 114 M------CSGAIMHARIARVVFGAPDPKTGACGSVVDAFADARLNHHTTVEGGVLADECG 167

Query: 136 IFLHAYLTRQVEKRSHITLKIA 157
             L ++  ++ +          
Sbjct: 168 AVLKSFFAQRRQAVREARRAQQ 189


>gi|325117380|emb|CBZ52932.1| Cytidine and deoxycytidylate deaminase family protein, related
           [Neospora caninum Liverpool]
          Length = 348

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 60/179 (33%), Gaps = 35/179 (19%)

Query: 4   SSFDAR-FMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTA----YGGCPHAE 56
           +  D R FMSAAL  +R    L      V C++V      V+ +G  A         H E
Sbjct: 175 TEADKRLFMSAALEEARSA--LQEGEVPVGCVLVDSRTRQVVAKGRNATNRTKNATRHCE 232

Query: 57  VQALE--------------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           ++AL+              EA  +      +VT EPC        CA  +   GI+RV  
Sbjct: 233 LEALDAYMARFPPTRIGDSEAPVDMSSIDLFVTCEPC------VMCAVALQCSGIKRVFY 286

Query: 103 CVDDPDVRVSGRGLQWLSQ-----KGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
              +      G  L +  +      G+     +   E    L ++ +R           
Sbjct: 287 GCGNDRFGGCGSVLSFHKKLSAHWTGLECCPGIFREEAIDLLRSFYSRGNPNAPEEKRH 345


>gi|325475089|gb|EGC78275.1| deoxycytidylate deaminase [Treponema denticola F0402]
          Length = 168

 Score = 61.1 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 53/156 (33%), Gaps = 43/156 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D  FM      ++     T       C+I +D  ++  G                   
Sbjct: 15  SWDEYFMDVCRAIAKRA---TCDRGRSGCVIARDHQILVTGYVGAPTGLPHCDDVGHQFK 71

Query: 47  ---TAYGG-------CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFII 93
                 G          HAE  A+ +A   G    GAT Y  + PC        CA  II
Sbjct: 72  KLQHEDGSITQHCVRTVHAEQNAICQAAKRGISIDGATLYCKMTPC------RTCAMLII 125

Query: 94  ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            CGI RVV      D   S   ++   + GII++ +
Sbjct: 126 NCGIVRVVAEKRYHD---SADTIEMFKKAGIILEHI 158


>gi|167824713|ref|ZP_02456184.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           pseudomallei 9]
 gi|226200116|ref|ZP_03795662.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|225927800|gb|EEH23841.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           pseudomallei Pakistan 9]
          Length = 198

 Score = 61.1 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 49/142 (34%), Gaps = 20/142 (14%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  +IV+   VI RG     G      HAE+ AL  A          G   YVTLEPC 
Sbjct: 54  PVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAALRAAARALRNYRMPGCELYVTLEPCL 113

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  C+  I+   I RVV    DP     G  +       L+    +   ++  E  
Sbjct: 114 M------CSGAIMHARIARVVFGAPDPKTGACGSVVDAFADARLNHHTTVEGGVLADECG 167

Query: 136 IFLHAYLTRQVEKRSHITLKIA 157
             L ++  ++ +          
Sbjct: 168 AVLKSFFAQRRQAVREARRAQQ 189


>gi|261188113|ref|XP_002620473.1| tRNA-specific adenosine-34 deaminase subunit Tad2p/ADAT2
           [Ajellomyces dermatitidis SLH14081]
 gi|239593348|gb|EEQ75929.1| tRNA-specific adenosine-34 deaminase subunit Tad2p/ADAT2
           [Ajellomyces dermatitidis SLH14081]
 gi|239609090|gb|EEQ86077.1| tRNA-specific adenosine-34 deaminase subunit Tad2p/ADAT2
           [Ajellomyces dermatitidis ER-3]
          Length = 187

 Score = 61.1 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 15/102 (14%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEE-----ARGATAYVTLEPCS 80
            V C++V +  VIG G+        G  HAE  A+EE          R    YVT+EPC 
Sbjct: 15  PVGCVLVHNDEVIGSGMNDTNKSMNGTRHAEFLAIEEVLRSHPRSIFRETDLYVTVEPCI 74

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                  CA  + +  IR V     +     +G  L+  S+K
Sbjct: 75  M------CASALRQYQIRHVYFGCANERFGGTGGVLKLHSEK 110


>gi|302392959|ref|YP_003828779.1| CMP/dCMP deaminase zinc-binding protein [Acetohalobium arabaticum
           DSM 5501]
 gi|302205036|gb|ADL13714.1| CMP/dCMP deaminase zinc-binding protein [Acetohalobium arabaticum
           DSM 5501]
          Length = 159

 Score = 61.1 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 51/150 (34%), Gaps = 43/150 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D  FM      ++    L      V  L+VK+G V+  G                   
Sbjct: 16  SWDQYFMELTSVVAKRSTCLRRK---VGALLVKEGRVLATGYNGAPSGLKHCSETGCIRE 72

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G    GAT Y T +PC        CA+ II 
Sbjct: 73  ERNIPSGQRHELCRGLHAEQNAIIQAALHGTSIDGATLYCTHQPC------VVCAKMIIN 126

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            GI  +++    PD   +      L + G+
Sbjct: 127 AGIDEIIIGGSYPDELSAS----MLEEAGV 152


>gi|297158628|gb|ADI08340.1| cytidine/deoxycytidine deaminase [Streptomyces bingchenggensis
           BCW-1]
          Length = 144

 Score = 61.1 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 43/122 (35%), Gaps = 18/122 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----CPHAEVQALEEAGE 65
           M  AL  +      T   P V  +++  DG  +G G            HAEV AL +A  
Sbjct: 1   MRLALEEAARA-PETGDVP-VGAVVLGPDGSPLGHGRNEREAHGDPTAHAEVLALRDAAG 58

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                   G T  VTLEPC        CA  I+   + RVV    D      G     + 
Sbjct: 59  RLGSWRLTGCTLVVTLEPC------TMCAGAIVLSRVDRVVYGATDDKAGAVGSLWDVVR 112

Query: 121 QK 122
            +
Sbjct: 113 DR 114


>gi|255084043|ref|XP_002508596.1| ytidine and deoxycytidylated deaminase zinc-binding protein
           [Micromonas sp. RCC299]
 gi|226523873|gb|ACO69854.1| ytidine and deoxycytidylated deaminase zinc-binding protein
           [Micromonas sp. RCC299]
          Length = 443

 Score = 61.1 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 36/124 (29%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV------------------ 46
           +D  FMS A   ++        N  V  +IV  D +++G G                   
Sbjct: 155 WDDYFMSVAFLSAQRSK---DPNKQVGAVIVGPDRVIMGVGYNGFPRGCSDSDLPWAKKS 211

Query: 47  -------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                  T Y    HAE+ A+  +  +   GAT YVT+ PC+       CA+ II+ GIR
Sbjct: 212 TNGNPMETKYAYVCHAEMNAIMNKNSQSLHGATVYVTMYPCNE------CAKLIIQSGIR 265

Query: 99  RVVV 102
            VV 
Sbjct: 266 EVVY 269


>gi|319939068|ref|ZP_08013432.1| ComE operon protein 2 family protein [Streptococcus anginosus
           1_2_62CV]
 gi|319812118|gb|EFW08384.1| ComE operon protein 2 family protein [Streptococcus anginosus
           1_2_62CV]
          Length = 155

 Score = 61.1 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 30/119 (25%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
           ++D  F + AL  +      T    SV  +IVKD  VI  G      G            
Sbjct: 7   AWDEYFAAQALLIANRS---TCKRASVGAVIVKDNKVISTGYNGSVSGTEHCIDHECLIV 63

Query: 54  --------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAEV A+ +  E    +G T YVT  PC +      C + +++ G +RVV 
Sbjct: 64  DGHCVRTLHAEVNAILQGAERGIPKGFTVYVTHFPCLN------CTKQLLQVGCKRVVY 116


>gi|126441141|ref|YP_001059426.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           pseudomallei 668]
 gi|126454685|ref|YP_001066697.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           pseudomallei 1106a]
 gi|134277676|ref|ZP_01764391.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           pseudomallei 305]
 gi|167739120|ref|ZP_02411894.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           pseudomallei 14]
 gi|217421765|ref|ZP_03453269.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           pseudomallei 576]
 gi|237812753|ref|YP_002897204.1| tRNA-specific adenosine deaminase [Burkholderia pseudomallei
           MSHR346]
 gi|242317933|ref|ZP_04816949.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           pseudomallei 1106b]
 gi|126220634|gb|ABN84140.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           pseudomallei 668]
 gi|126228327|gb|ABN91867.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           pseudomallei 1106a]
 gi|134251326|gb|EBA51405.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           pseudomallei 305]
 gi|217395507|gb|EEC35525.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           pseudomallei 576]
 gi|237506312|gb|ACQ98630.1| tRNA-specific adenosine deaminase [Burkholderia pseudomallei
           MSHR346]
 gi|242141172|gb|EES27574.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           pseudomallei 1106b]
          Length = 198

 Score = 61.1 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 49/142 (34%), Gaps = 20/142 (14%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  +IV+   VI RG     G      HAE+ AL  A          G   YVTLEPC 
Sbjct: 54  PVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAALRAAARALRNYRMPGCELYVTLEPCL 113

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  C+  I+   I RVV    DP     G  +       L+    +   ++  E  
Sbjct: 114 M------CSGAIMHARIARVVFGAPDPKTGACGSVVDAFADARLNHHTTVEGGVLADECG 167

Query: 136 IFLHAYLTRQVEKRSHITLKIA 157
             L ++  ++ +          
Sbjct: 168 AVLKSFFAQRRQAVREARRAQQ 189


>gi|53719734|ref|YP_108720.1| putative deaminase [Burkholderia pseudomallei K96243]
 gi|52210148|emb|CAH36126.1| putative deaminase [Burkholderia pseudomallei K96243]
          Length = 174

 Score = 61.1 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 49/142 (34%), Gaps = 20/142 (14%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  +IV+   VI RG     G      HAE+ AL  A          G   YVTLEPC 
Sbjct: 30  PVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAALRAAARALRNYRMPGCELYVTLEPCL 89

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  C+  I+   I RVV    DP     G  +       L+    +   ++  E  
Sbjct: 90  M------CSGAIMHARIARVVFGAPDPKTGACGSVVDAFADARLNHHTTVEGGVLADECG 143

Query: 136 IFLHAYLTRQVEKRSHITLKIA 157
             L ++  ++ +          
Sbjct: 144 AVLKSFFAQRRQAVREARRAQQ 165


>gi|325001093|ref|ZP_08122205.1| bifunctional deaminase-reductase-like protein [Pseudonocardia sp.
           P1]
          Length = 102

 Score = 61.1 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 9/102 (8%)

Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
               R ++   +A+S D  I  AG  ++ ++  +  ++V  +RA+ DA+LVG GTV  DD
Sbjct: 1   MTRGRPYVLASVAMSLDGYIDDAGPATLVLSDAVDLDRVDGVRAEVDAVLVGAGTVRNDD 60

Query: 205 PELTC--------RLNGLQEHSPMRIILDPHF-KLSLDSKII 237
           P L          R+   +  SP+R+++      L   + + 
Sbjct: 61  PRLLVRSDRRRAERVAAGRAPSPLRVVVAAAGADLDPSATVF 102


>gi|237712024|ref|ZP_04542505.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229453345|gb|EEO59066.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 225

 Score = 61.1 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 7/114 (6%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVI-IVTENDDPVLALAFRKKNINIIYCDCR--DLKKL 278
           II+D + KL         A   P++ IV+E          R   I+ I       DL + 
Sbjct: 84  IIVDTYGKLRWQE---GEADGHPLLCIVSERVSEEYLETLRTLGISWIAAGAERIDLPQA 140

Query: 279 LTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           + +L    GV  L + GG  +  SF+ + L+D + +  +  + G  G  +  + 
Sbjct: 141 MELLHEHFGVERLAIVGGGHICGSFLEAGLIDEVSIMVAPGIDGRKGQTAVFDG 194


>gi|313618870|gb|EFR90742.1| ComE operon protein 2 [Listeria innocua FSL S4-378]
          Length = 186

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 40/173 (23%)

Query: 1   MPVSSFDARFMSAALRFSRWHV---GLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP--- 53
           M   ++D  FM      ++ H+     T T   V   IV+D  +I  G      G     
Sbjct: 1   MQRIAWDQFFM------AQSHLISSRSTCTRLMVGATIVRDKRIIAGGYNGSIAGGDHCA 54

Query: 54  ---------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                          HAE+ A+ +    G     A  YVT  PC        C + II+ 
Sbjct: 55  EHGCYVVDGHCIRTIHAEMNAILQCAKFGASTDKAELYVTHFPCL------ACTKSIIQA 108

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
           GI++V    D  +   +   L+  +  G+ + ++   E  + ++ +   ++  
Sbjct: 109 GIKKVYFAKDYKNHPYA---LELFNIAGVELQKVEFDESVLQVNNWNAEKMHT 158


>gi|16800586|ref|NP_470854.1| hypothetical protein lin1518 [Listeria innocua Clip11262]
 gi|16413991|emb|CAC96749.1| comEB [Listeria innocua Clip11262]
          Length = 186

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 40/173 (23%)

Query: 1   MPVSSFDARFMSAALRFSRWHV---GLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP--- 53
           M   ++D  FM      ++ H+     T T   V   IV+D  +I  G      G     
Sbjct: 1   MQRIAWDQFFM------AQSHLISSRSTCTRLMVGATIVRDKRIIAGGYNGSIAGGDHCA 54

Query: 54  ---------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                          HAE+ A+ +    G     A  YVT  PC        C + II+ 
Sbjct: 55  EHGCYVVDGHCIRTIHAEMNAILQCAKFGASTDKAELYVTHFPCL------ACTKSIIQA 108

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
           GI++V    D  +   +   L+  +  G+ + ++   E  + ++ +   ++  
Sbjct: 109 GIKKVYFAKDYKNHPYA---LELFNIAGVELQKVEFDESVLQVNNWNAEKMHT 158


>gi|227824209|ref|YP_002828182.1| CMP/dCMP deaminase, zinc-binding [Sinorhizobium fredii NGR234]
 gi|227343211|gb|ACP27429.1| CMP/dCMP deaminase, zinc-binding [Sinorhizobium fredii NGR234]
          Length = 171

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 17/110 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
            RF+  A+  +R    L         ++V++G VIGRGV           HAE+ A+  A
Sbjct: 23  ERFLREAVSLAR--TNLEKGGRPFGAVVVRNGEVIGRGVNEMLDTGDPTSHAELNAVRAA 80

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            +         AT Y +  PC      P C   +   GI  +     + D
Sbjct: 81  AKTIASLRLEDATVYASGHPC------PMCLAAMRMAGITEIAYAHSNED 124


>gi|223933157|ref|ZP_03625149.1| CMP/dCMP deaminase zinc-binding [Streptococcus suis 89/1591]
 gi|223898218|gb|EEF64587.1| CMP/dCMP deaminase zinc-binding [Streptococcus suis 89/1591]
          Length = 155

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 55/149 (36%), Gaps = 33/149 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
           ++D  F + AL  +      T     V  ++VKD  VI  G                   
Sbjct: 7   AWDEYFAAQALLIANRA---TCKRAKVGAVLVKDNKVIATGYNGSVSGTEHCLDQECLMV 63

Query: 48  --AYGGCPHAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                   HAEV A+ +  E    +G TAYVT  PC +      C++ +++ G +RVV  
Sbjct: 64  DGHCARTLHAEVNAILQGAERGIPKGFTAYVTHFPCLN------CSKQLLQVGCKRVVYI 117

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
            +    R+         +KG  +  +   
Sbjct: 118 NEY---RMDDYAQYLYKEKGCELVHLPLE 143


>gi|217071302|gb|ACJ84011.1| unknown [Medicago truncatula]
          Length = 181

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 16/116 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           +   D +F+  A+  +   V      P    +IV +  VI               HAEV 
Sbjct: 22  IKDRDHKFLRKAVEEAYKGVECEDGGP-FGAVIVLNDEVIASCHNMVLRNTDPSAHAEVT 80

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           A+ EA ++ +         Y + EPC      P C   I    ++R+V        
Sbjct: 81  AIREACKKLKQIELSECEIYASCEPC------PMCFGAIHLSRVKRLVYGAKAEAA 130


>gi|84515288|ref|ZP_01002650.1| hypothetical protein SKA53_01481 [Loktanella vestfoldensis SKA53]
 gi|84510571|gb|EAQ07026.1| hypothetical protein SKA53_01481 [Loktanella vestfoldensis SKA53]
          Length = 148

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 38/101 (37%), Gaps = 15/101 (14%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            V  +I +DG +I +             HAE+ A+  A      E   G   YVTLEPC 
Sbjct: 24  PVGAVITQDGAIIAQAGNRTRELNDPTAHAEMLAIRAACAALGQERLTGCDLYVTLEPC- 82

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                P CA  I    I R+     DP      +G +  + 
Sbjct: 83  -----PMCAAAISNARIARLYYAAADPKSGGVAQGPRIFTH 118


>gi|307109298|gb|EFN57536.1| hypothetical protein CHLNCDRAFT_20896 [Chlorella variabilis]
          Length = 156

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 42/112 (37%), Gaps = 18/112 (16%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI-----GRGVTAYGGCPHAEVQA 59
             D RFM  AL  +R           V  ++V  G  +          A     HAE+  
Sbjct: 6   DDDERFMRLALEQARLA--FDDGEVPVGAVLVSGGGQVLAAARNAAEGAADPTAHAELLC 63

Query: 60  LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           + +A   A G     AT YVTLEPC      P CA  +++     +   V+ 
Sbjct: 64  IRQAATAAGGWRLLDATLYVTLEPC------PMCAGALLQVRRAGLCSGVEQ 109


>gi|158429187|pdb|2O3K|A Chain A, Yeast Cytosine Deaminase D92e Triple Mutant Bound To
           Transition State Analogue Hpy
 gi|158429188|pdb|2O3K|B Chain B, Yeast Cytosine Deaminase D92e Triple Mutant Bound To
           Transition State Analogue Hpy
          Length = 161

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 58/155 (37%), Gaps = 19/155 (12%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCPHAEVQ 58
           S +D + M  A   +          P   CLI  KDG V+GRG            H E+ 
Sbjct: 11  SKWDQKGMDIAYEEALLG-YKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEIS 69

Query: 59  ALEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
            LE  G       +  T Y TL PC        C   II  GI R V+     +V    +
Sbjct: 70  TLENCGRLEGKVYKDTTLYTTLSPC------EMCTGAIIMYGIPRCVIG---ENVNFKSK 120

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           G ++L  +G  V  + +   K  +  ++  + +  
Sbjct: 121 GEKYLQTRGHEVVVVDDERCKKLMKQFIDERPQDW 155


>gi|296141715|ref|YP_003648958.1| CMP/dCMP deaminase zinc-binding protein [Tsukamurella paurometabola
           DSM 20162]
 gi|296029849|gb|ADG80619.1| CMP/dCMP deaminase zinc-binding protein [Tsukamurella paurometabola
           DSM 20162]
          Length = 144

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 48/123 (39%), Gaps = 22/123 (17%)

Query: 11  MSAALRFSRWHVGLTSTN-PSVACLIVK-DGIVIGRGVTAYGG----CPHAEVQALEEA- 63
           M  AL  +    GL+  +   V  +I+  DG+V+ R             HAEV A+ EA 
Sbjct: 1   MGLALEAA----GLSGPDDVPVGAVILDPDGVVLARAGNRREALADPTAHAEVLAIREAA 56

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                G    G T  VTLEPC+       CA  ++   I R+V    +P     G     
Sbjct: 57  TRFGDGWRLGGCTLAVTLEPCAM------CAGALVSARIERLVFGAYEPKTGAVGSVWDV 110

Query: 119 LSQ 121
           +  
Sbjct: 111 VRD 113


>gi|254565397|ref|XP_002489809.1| Deoxycytidine monophosphate (dCMP) deaminase required for dCTP and
           dTTP synthesis [Pichia pastoris GS115]
 gi|238029605|emb|CAY67528.1| Deoxycytidine monophosphate (dCMP) deaminase required for dCTP and
           dTTP synthesis [Pichia pastoris GS115]
 gi|328350225|emb|CCA36625.1| dCMP deaminase [Pichia pastoris CBS 7435]
          Length = 308

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 51/149 (34%), Gaps = 41/149 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-- 53
           S+DA FM  A   +            V C++V+D  +I  G             GGC   
Sbjct: 159 SWDAYFMRLA-DLAALRSNCMKR--RVGCVVVRDNRIISTGYNGTPRNMPNCNQGGCARC 215

Query: 54  ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                           HAE  AL EAG +  +  +  Y    PC        C+  II+ 
Sbjct: 216 NSGNSSGNGLSTCLCLHAEENALLEAGRDRISTNSILYCNTCPCL------TCSIKIIQS 269

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           GI+ VV         +     Q L+  G+
Sbjct: 270 GIQEVVYSQSYS---MDTLSYQALNAAGV 295


>gi|255718193|ref|XP_002555377.1| KLTH0G07832p [Lachancea thermotolerans]
 gi|238936761|emb|CAR24940.1| KLTH0G07832p [Lachancea thermotolerans]
          Length = 250

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 68/184 (36%), Gaps = 34/184 (18%)

Query: 1   MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVK--DGIVIGRGVTAYG----GC 52
           M + S+   FM  A + +R+ +  G T     VAC+ V      V+  G+        G 
Sbjct: 1   MSLDSY-VHFMRMATKLARYALDHGET----PVACIFVHTPADQVVAYGMNDTNRSLTGI 55

Query: 53  PHAEVQALEEAGEE--------ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
            HAE   +E+   +         +  T YVT+EPC        CA  + + GI++VV   
Sbjct: 56  AHAEFMGIEQIQSKFGAQDTSIFKDITLYVTVEPCIM------CASALKQLGIQKVVFGC 109

Query: 105 DDPDVRVSGRGLQWLSQKG-------IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
            +     +G  L              I V  ++  E  + L  +  R+ E+      K  
Sbjct: 110 GNERFGGNGSILSIQKDSCTAPQNKHISVPGILRKEAIMLLRYFYVRENERSPKPKAKAN 169

Query: 158 VSQD 161
              D
Sbjct: 170 RKLD 173


>gi|172041612|ref|YP_001801326.1| putative cytosine/adenosine deaminase [Corynebacterium urealyticum
           DSM 7109]
 gi|171852916|emb|CAQ05892.1| putative cytosine/adenosine deaminase [Corynebacterium urealyticum
           DSM 7109]
          Length = 198

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 53/154 (34%), Gaps = 26/154 (16%)

Query: 7   DARFMSAALRFSRWHVGLTST-NPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQAL 60
           D   M  A+  +      T   +  V  L+V  DG V+               HAEV AL
Sbjct: 53  DEELMRQAIDVA----CSTPPGDVPVGALVVDADGTVLATATNRREQDADPLAHAEVLAL 108

Query: 61  EEA------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
            +A             T  VTLEPC+       CA   +   + R+V    +P     G 
Sbjct: 109 RQAVRALGDSWRLERCTLVVTLEPCAM------CAGAALGARVGRIVFGAYEPRTGACGS 162

Query: 115 GL----QWLSQKGIIVDRMMESEGKIFLHAYLTR 144
                 + L  K  +   +++ E +  L  +  +
Sbjct: 163 VWDLPREALLHKAEVRGGVLQPECEQLLRGFFEK 196


>gi|145592768|ref|YP_001157065.1| CMP/dCMP deaminase, zinc-binding [Salinispora tropica CNB-440]
 gi|145302105|gb|ABP52687.1| tRNA-adenosine deaminase [Salinispora tropica CNB-440]
          Length = 153

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 52/158 (32%), Gaps = 32/158 (20%)

Query: 11  MSAALRFSRWHVGLTS------TNP-----SVACLIV-KDGIVIGRGVTAY----GGCPH 54
           M  AL  +      T         P      V  L++  DG  +  G            H
Sbjct: 1   MRRALEVAVTGAETTITAADDIPVPAADDIPVGALLLGPDGAELATGRNERELTGDPTAH 60

Query: 55  AEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AEV AL  A          G T  VTLEPC        CA  ++   +  VV    +P  
Sbjct: 61  AEVLALRRAAGRLGRWRLDGCTLVVTLEPC------TMCAGALVLARVSTVVFGAWEPKT 114

Query: 110 RVSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
             +G     L  + +     +   ++E+E    L A+ 
Sbjct: 115 GAAGSLWDVLRDRRLNHRPEVYGGVLETETAAVLRAFF 152


>gi|71000341|ref|XP_754865.1| DRAP deaminase [Aspergillus fumigatus Af293]
 gi|66852502|gb|EAL92827.1| DRAP deaminase, putative [Aspergillus fumigatus Af293]
 gi|159127878|gb|EDP52993.1| DRAP deaminase, putative [Aspergillus fumigatus A1163]
          Length = 193

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 34/164 (20%)

Query: 2   PVSSFDAR-FMSAALRFSRWHVGLTSTNP---SVACLIVKD--GIVIGRGVTAY------ 49
            ++S D + +M  AL  +R    L+   P    V  ++V      ++  G +        
Sbjct: 9   TIASGDHKAYMEYALEKAR----LSPPAPTKFCVGAVLVDADKNEILSTGYSMELPGDRP 64

Query: 50  --GGCPHAEVQALEEAGEE------------ARGATAYVTLEPCSHY-GRSPPCAQFIIE 94
              G  HAE     +  E+             +    Y T+EPC+     +  C   I+ 
Sbjct: 65  GDPGNTHAEQCCFIKVAEKHNIPEDRLGEVLPKNTVLYTTMEPCNERLSGNRTCVDRILS 124

Query: 95  CG--IRRVVVCVDDPDVRVSGRG-LQWLSQKGIIVDRMMESEGK 135
               ++ V V + +P+  +      + L   G+IV+ +   E +
Sbjct: 125 LKGAVKVVYVGIKEPETFIGQNMSKKKLEDGGVIVEHVEGMEQQ 168


>gi|16331502|ref|NP_442230.1| hypothetical protein sll0051 [Synechocystis sp. PCC 6803]
 gi|1001158|dbj|BAA10300.1| sll0051 [Synechocystis sp. PCC 6803]
          Length = 159

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 9/97 (9%)

Query: 3  VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
          V+  D  +M  A+   R    +  T      +IVKDG VIG    +         HAEV 
Sbjct: 2  VTEQDREYMRQAIAIMRDAGVVNKTGGPFGVVIVKDGEVIGAAGNSVIQDNDPSAHAEVN 61

Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQ 90
          A+ EA +        GA  Y + E C     +   A+
Sbjct: 62 AIREACKTVGSWNLEGAVMYSSCECCPMCYATSYWAR 98


>gi|299822872|ref|ZP_07054758.1| deoxycytidylate deaminase [Listeria grayi DSM 20601]
 gi|299816401|gb|EFI83639.1| deoxycytidylate deaminase [Listeria grayi DSM 20601]
          Length = 160

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 55/163 (33%), Gaps = 34/163 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------ 53
           M   ++D  FM+ +   S      T T   V   IV+D  +I  G      G        
Sbjct: 1   MQRIAWDQFFMAQSYLISTRS---TCTRLMVGATIVRDKRIIASGYNGSIAGGDHCTEHG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A+ +    G     A  YVT  PC        C + II+ GI+
Sbjct: 58  CYIVDGHCIRTIHAEMNAILQCAKFGASTDNAELYVTHFPCI------SCCKSIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
            V    D  +   +   ++   Q  +   ++  S+       +
Sbjct: 112 TVYYGEDYKNHPYA---VELFEQANVTTKKVEMSKDIFDREPF 151


>gi|284047807|ref|YP_003398146.1| CMP/dCMP deaminase zinc-binding protein [Acidaminococcus fermentans
           DSM 20731]
 gi|283952028|gb|ADB46831.1| CMP/dCMP deaminase zinc-binding protein [Acidaminococcus fermentans
           DSM 20731]
          Length = 150

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 48/138 (34%), Gaps = 39/138 (28%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
           M    +D+ FM  A   S+    L      V  ++VKD  ++  G               
Sbjct: 1   MERPDWDSYFMEIAEVVSKRSTCLRRK---VGAVLVKDRQILATGYNGTPKGLPHCEQVG 57

Query: 47  -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE  A+ +A   G    GAT Y T +PC        C++
Sbjct: 58  CLREKLHVPSGQNHELCRGIHAEQNAVIQAAVNGVSTLGATLYCTHQPC------VVCSK 111

Query: 91  FIIECGIRRVVVCVDDPD 108
            +I  GI+R+V     PD
Sbjct: 112 ILINAGIKRIVYANPYPD 129


>gi|167894828|ref|ZP_02482230.1| putative deaminase [Burkholderia pseudomallei 7894]
          Length = 150

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 49/142 (34%), Gaps = 20/142 (14%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  +IV+   VI RG     G      HAE+ AL  A          G   YVTLEPC 
Sbjct: 6   PVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAALRAAARALRNYRMPGCELYVTLEPCL 65

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  C+  I+   I RVV    DP     G  +       L+    +   ++  E  
Sbjct: 66  M------CSGAIMHARIARVVFGAPDPKTGACGSVVDAFADARLNHHTTVEGGVLADECG 119

Query: 136 IFLHAYLTRQVEKRSHITLKIA 157
             L ++  ++ +          
Sbjct: 120 AVLKSFFAQRRQAVREARRAQQ 141


>gi|321312043|ref|YP_004204330.1| DNA transport protein [Bacillus subtilis BSn5]
 gi|320018317|gb|ADV93303.1| putative enzyme associated to DNA transport (competence) [Bacillus
           subtilis BSn5]
          Length = 189

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 57/162 (35%), Gaps = 34/162 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------ 53
           M   S++  FM+ +   +      T    SV   IV+D  +I  G      G        
Sbjct: 1   MERISWNQYFMAQSHLLALRS---TCPRLSVGATIVRDKRMIAGGYNGSIAGGVHCADEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A+ +    G    GA  YVT  PC        C + II+ GI+
Sbjct: 58  CLMIDDHCARTIHAEMNAILQCSKFGVPTDGAEIYVTHYPCIQ------CCKSIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
            V    D      +    +   Q G+ V+++   E  + L  
Sbjct: 112 TVYYAEDYKTHPYAQ---ELFEQAGVTVEQVELDEMIVDLKN 150


>gi|270284659|ref|ZP_05966459.2| cytidine/deoxycytidylate deaminase family protein [Bifidobacterium
           gallicum DSM 20093]
 gi|270276606|gb|EFA22460.1| cytidine/deoxycytidylate deaminase family protein [Bifidobacterium
           gallicum DSM 20093]
          Length = 170

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 54/149 (36%), Gaps = 21/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
            + M +A+  +          P  AC++   G VIGRG            HAE++A+ EA
Sbjct: 25  EQAMESAIAQALQAKQHGDV-PIGACVLDAGGRVIGRGHNMRERNLDPLAHAEIEAMREA 83

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T  VTLEPC      P CA   ++  + R+V    D  +   G     
Sbjct: 84  AATLGSWNLEDCTLVVTLEPC------PMCAGACLQTHVGRIVFGAWDAKLGACGSVWDL 137

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYL 142
                I     +   + ESE    L A+ 
Sbjct: 138 PRDPHIGAHPEVYGGIRESECAQLLTAFF 166


>gi|15241124|ref|NP_198157.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
           thaliana]
 gi|14532498|gb|AAK63977.1| AT5g28050/F15F15_120 [Arabidopsis thaliana]
 gi|22137296|gb|AAM91493.1| AT5g28050/F15F15_120 [Arabidopsis thaliana]
 gi|332006385|gb|AED93768.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis
           thaliana]
          Length = 185

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 43/134 (32%), Gaps = 19/134 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
           V   D +F++ A+  +   V      P    +IV +  V+               HAEV 
Sbjct: 26  VHDSDHKFLTQAVEEAYKGVDCGDGGP-FGAVIVHNNEVVASCHNMVLKYTDPTAHAEVT 84

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV---R 110
           A+ EA ++           Y + EPC      P C   I    ++R+V            
Sbjct: 85  AIREACKKLNKIELSECEIYASCEPC------PMCFGAIHLSRLKRLVYGAKAEAAIAIG 138

Query: 111 VSGRGLQWLSQKGI 124
                   L   G+
Sbjct: 139 FDDFIADALRGTGV 152


>gi|318042491|ref|ZP_07974447.1| putative riboflavin-specific deaminase [Synechococcus sp. CB0101]
          Length = 213

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 17/172 (9%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD-- 204
             R  + L +AVS D  +     G+  I G   +  +    A +DA L+G  T+      
Sbjct: 1   MPRPELRLVLAVSLDGRLAPPAGGAAQIGGRGDRAVLEEALAWADACLIGGRTLRLHGCT 60

Query: 205 ------PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
                 P L  R    +   P  +++          +     L   ++       P    
Sbjct: 61  CLIHSPPLLEQRRQQRRSEQPAAVVVSRDGCFDPQLRFFAQPLERWLLTPASMAAPA--- 117

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
                             + L  L  +G+  L++ GGA +A + +  +LVD 
Sbjct: 118 ------GFHAAVQLSSWPEALAALADQGLERLVLLGGADLAGTLLQEQLVDE 163


>gi|259506366|ref|ZP_05749268.1| guanine deaminase [Corynebacterium efficiens YS-314]
 gi|259166044|gb|EEW50598.1| guanine deaminase [Corynebacterium efficiens YS-314]
          Length = 155

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 16/103 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA-- 63
           F+  A+  SR  +      P    +I +   +I               HAE+ A+  A  
Sbjct: 5   FLHRAVELSRRGMEAGQGGP-FGAVIARGDRIIAEAYNTVLATKDPTNHAEIVAIRSAAR 63

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                +  G   YV  +PC      P CA  +    + RV   
Sbjct: 64  VLGTVDLTGCELYVNAQPC------PMCAGAVYWARLERVYFA 100


>gi|167748501|ref|ZP_02420628.1| hypothetical protein ANACAC_03245 [Anaerostipes caccae DSM 14662]
 gi|167652493|gb|EDR96622.1| hypothetical protein ANACAC_03245 [Anaerostipes caccae DSM 14662]
          Length = 170

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 58/160 (36%), Gaps = 34/160 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV-------------TAYG 50
           S+D  FM  AL  ++        +  V   +V D   ++  G                  
Sbjct: 19  SWDQYFMGVALLSAQRSK---DDHTQVGACLVNDQNKILSVGYNGMPTGCHDDDMPWERE 75

Query: 51  GCP---------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           G P         HAE+ A+   G     GA  YVTL PC+       CA+ II+ G++ V
Sbjct: 76  GEPLDTKYFYVCHAELNAILNYGGGSLYGARVYVTLFPCNE------CAKAIIQSGMKEV 129

Query: 101 VVCVDDP-DVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
           +   D   D  ++    +     G+   +    +  I LH
Sbjct: 130 IYMQDKYADDDMTVASKRMFDMAGVKYRKFEPKDQTIELH 169


>gi|16079612|ref|NP_390436.1| hypothetical protein BSU25580 [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221310483|ref|ZP_03592330.1| required for DNA binding and uptake (competence) [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221314807|ref|ZP_03596612.1| required for DNA binding and uptake (competence) [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221319729|ref|ZP_03601023.1| required for DNA binding and uptake (competence) [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|221324007|ref|ZP_03605301.1| required for DNA binding and uptake (competence) [Bacillus subtilis
           subsp. subtilis str. SMY]
 gi|418361|sp|P32393|COMEB_BACSU RecName: Full=ComE operon protein 2
 gi|289261|gb|AAC36906.1| comE ORF2 [Bacillus subtilis]
 gi|1303797|dbj|BAA12453.1| ComEB [Bacillus subtilis]
 gi|2635004|emb|CAB14500.1| putative enzyme associated to DNA transport (competence) [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|291485008|dbj|BAI86083.1| operon protein ComEB [Bacillus subtilis subsp. natto BEST195]
          Length = 189

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 57/162 (35%), Gaps = 34/162 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------ 53
           M   S++  FM+ +   +      T    SV   IV+D  +I  G      G        
Sbjct: 1   MERISWNQYFMAQSHLLALRS---TCPRLSVGATIVRDKRMIAGGYNGSIAGGVHCADEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A+ +    G    GA  YVT  PC        C + II+ GI+
Sbjct: 58  CLMIDDHCARTIHAEMNAILQCSKFGVPTDGAEIYVTHYPCIQ------CCKSIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
            V    D      +    +   Q G+ V+++   E  + L  
Sbjct: 112 TVYYAEDYKTHPYAQ---ELFEQAGVTVEQVELDEMIVDLKN 150


>gi|283457271|ref|YP_003361841.1| cytosine/adenosine deaminase [Rothia mucilaginosa DY-18]
 gi|283133256|dbj|BAI64021.1| cytosine/adenosine deaminase [Rothia mucilaginosa DY-18]
          Length = 175

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 53/157 (33%), Gaps = 23/157 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHA 55
           +P  S  + +M+ AL       G     P +  ++V + G++IG         +    HA
Sbjct: 22  IPARSEHSEWMAHALVEGA-AAGERGEIP-IGAVVVDEQGVIIGSAGNTREQEHDPSAHA 79

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           EV A+ +A          G T  VT+EPC     +      I+   +  VV    +    
Sbjct: 80  EVNAIRQAAACRGQWRLDGCTLVVTVEPCLMCAGT------ILASRVSTVVFGAWEEKTG 133

Query: 111 VSGRGLQWLSQ-----KGIIVDRMMESEGKIFLHAYL 142
            +G     L          +   +   E    +  + 
Sbjct: 134 AAGSRYDVLRDGRVAPAPEVYAGVRADECAQLMVDFF 170


>gi|156387791|ref|XP_001634386.1| predicted protein [Nematostella vectensis]
 gi|156221468|gb|EDO42323.1| predicted protein [Nematostella vectensis]
          Length = 156

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 43/124 (34%), Gaps = 22/124 (17%)

Query: 3   VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAE 56
           +  ++ +F+  A++ S+     GL         +I KD  +I               HAE
Sbjct: 1   MEEYEVQFLERAVQLSKEGSSQGLGMP---FGAVIAKDNKIIAETANLSFVNCDPTAHAE 57

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           V A+ +A    +     G   Y +  PC+       C   I    I RV      P V  
Sbjct: 58  VSAIRQACSALKSRDLTGCDLYTSCYPCAM------CMAAIYWASISRVYYAA--PKVSF 109

Query: 112 SGRG 115
           S R 
Sbjct: 110 SERW 113


>gi|313623713|gb|EFR93860.1| ComE operon protein 2 [Listeria innocua FSL J1-023]
          Length = 186

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 40/173 (23%)

Query: 1   MPVSSFDARFMSAALRFSRWHV---GLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP--- 53
           M   ++D  FM      ++ H+     T T   V   IV+D  +I  G      G     
Sbjct: 1   MQRIAWDQFFM------AQSHLISSRSTCTRLMVGATIVRDKRIIAGGYNGSIAGGDHCA 54

Query: 54  ---------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                          HAE+ A+ +    G     A  YVT  PC        C + II+ 
Sbjct: 55  EHGCYVVDGHCIRTIHAEMNAILQCAKFGASTDKAELYVTHFPCL------ACTKSIIQA 108

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
           GI++V    D  +   +   L+  +  G+ + ++   E  + ++ +   ++  
Sbjct: 109 GIKKVYFAKDYKNHPYA---LELFNIAGVELQKVEFDESVLQVNNWNAEKMHT 158


>gi|302794668|ref|XP_002979098.1| hypothetical protein SELMODRAFT_109716 [Selaginella moellendorffii]
 gi|300153416|gb|EFJ20055.1| hypothetical protein SELMODRAFT_109716 [Selaginella moellendorffii]
          Length = 162

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 39/111 (35%), Gaps = 23/111 (20%)

Query: 30  SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA------------GEEARGATAY 73
            V C+IV++G VI  G            HAE++A++               +   G   Y
Sbjct: 12  PVGCVIVENGRVIASGSNRTNETRNATRHAEMEAIDMLLPRWECSSHEDFSKRFAGCELY 71

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           VT EPC        CA  +   GI +V       D       +  L   G+
Sbjct: 72  VTCEPCIM------CAAALSLLGIGKVFYGC-KNDRFGGCGSILSLHSNGV 115


>gi|255280581|ref|ZP_05345136.1| putative RibD domain protein [Bryantella formatexigens DSM 14469]
 gi|255269046|gb|EET62251.1| putative RibD domain protein [Bryantella formatexigens DSM 14469]
          Length = 235

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 85/239 (35%), Gaps = 32/239 (13%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPI---TGFISKNQVHLLRAQSDAILVGIGT---- 199
             R +I   I  + D  I  A  G+      +   ++ +    RA+  A L G  T    
Sbjct: 1   MDRPYIICHILSALDGKIAGAFAGTKAAQAASEEYARIRS-AYRAE--AWLYGTTTTKEF 57

Query: 200 ------VLADDPELTCRLNGLQEHSPMR---IILDPHFKLSLDSKIIKTALL--APVI-I 247
                 VL  D +           + +R   I LD   ++  +S I +      A VI I
Sbjct: 58  TQYKKPVLEPDCQ-DVPDGDYIADTNLRFYYISLDTAGEIGWESGIFQKPGRPGAHVIEI 116

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDL--KKLLTILVGR-GVTSLLVEGGAAVAHSFIN 304
           +TE          RKK ++ I      L  K     L     + ++L+ GG  V  +FI 
Sbjct: 117 LTEETPAAYRAYLRKKGVSYIIAGDTSLDCKAATEKLKRLFMINTILICGGGTVNWTFIQ 176

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYF-GSDVCLEYIGK 357
             +VD + L  +    G+   P+  E+  L        F     +    S V L Y+ K
Sbjct: 177 QGVVDELSLILAPAADGDPSTPTVFEKSELLAVTAPVEFQLKNAEQLRDSGVWLTYLVK 235


>gi|50305461|ref|XP_452690.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641823|emb|CAH01541.1| KLLA0C10989p [Kluyveromyces lactis]
          Length = 238

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 65/194 (33%), Gaps = 28/194 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYG----GCPHAEVQ 58
           S D   M  A+  +++   L      VAC+ V      VI  G+        G  HAE  
Sbjct: 2   SQDLLHMRTAITLAKYA--LDHEETPVACIFVHSKLNKVIAYGMNGTNESISGISHAEFM 59

Query: 59  ALEEAGEE-------ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
            +++  E+             YVT+EPC        CA  + + GI++VV    +     
Sbjct: 60  GIKQIQEKYGTDPKILSEVVLYVTVEPCIM------CASALKQLGIKKVVFGCGNERFGG 113

Query: 112 SGRGLQWLSQKG-------IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164
           +G  L   +          + +  ++  E  + L  +  R+ ++      K     D   
Sbjct: 114 NGSILCIHNDTSTNKSNKYVSIPGVLRREAIMLLRYFYVRENDRAPKPRTKKDRKLDKET 173

Query: 165 GMAGCGSVPITGFI 178
                    +T   
Sbjct: 174 FPPLQWDKYLTLEE 187


>gi|62389126|ref|YP_224528.1| cytosine deaminase [Corynebacterium glutamicum ATCC 13032]
 gi|41324459|emb|CAF18799.1| PUTATIVE CYTOSINE DEAMINASE [Corynebacterium glutamicum ATCC 13032]
          Length = 143

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 49/148 (33%), Gaps = 25/148 (16%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGG----CPHAEVQALEEA-- 63
           M  AL  +R        +  V  +I    G ++               HAE+ AL  A  
Sbjct: 1   MRHALDIARQ---TPEGDVPVGAVIYAPTGEILATATNRREADRDPTAHAEIIALRRAAR 57

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
               G      TA VTLEPCS       CA  ++   I R+V    +P     G     +
Sbjct: 58  RFSDGWRLSDCTAVVTLEPCSM------CAGALVGARIGRIVFGAFEPRTGACGSVFDVV 111

Query: 120 SQKGI-----IVDRMMESEGKIFLHAYL 142
               +     +   ++E E    +  + 
Sbjct: 112 RDPAVLHKVEVSGGILEPECAALMTEFF 139


>gi|331701117|ref|YP_004398076.1| ComE operon protein 2 [Lactobacillus buchneri NRRL B-30929]
 gi|329128460|gb|AEB73013.1| ComE operon protein 2 [Lactobacillus buchneri NRRL B-30929]
          Length = 158

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 48/135 (35%), Gaps = 31/135 (22%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
           +D  FM  A+  +      T    SV  +IV+D  +I  G                    
Sbjct: 7   WDQYFMMQAVLLASRS---TCERLSVGAVIVRDKRIIAGGYNGSVAGDDHCIDVGCYLED 63

Query: 54  -------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE+ A+ +    GE    A  YVT  PC        C + +++ GI ++   
Sbjct: 64  GHCVRTIHAEMNAILQCAKFGESTDNAEIYVTDFPCLQ------CTKMLLQAGITKINYL 117

Query: 104 VDDPDVRVSGRGLQW 118
            +  +   + + ++ 
Sbjct: 118 RNYHNNDYAQKLIRL 132


>gi|226364462|ref|YP_002782244.1| deaminase [Rhodococcus opacus B4]
 gi|226242951|dbj|BAH53299.1| putative deaminase [Rhodococcus opacus B4]
          Length = 161

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 45/121 (37%), Gaps = 21/121 (17%)

Query: 1   MPVSSFD---ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----C 52
           M  S  D      +  A+  +       + N     + V  DG VI  G  +        
Sbjct: 1   MSQSDVDDVDLAHLRRAIELAD--ETGDAGNRPFGAVAVGADGHVISEGANSVATSADVT 58

Query: 53  PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
            HAE+ A+  A  E R     GAT Y + EPC      P C+  ++  GI RVV      
Sbjct: 59  EHAELDAITTACGEGRTGDLVGATMYASGEPC------PMCSAAMVWAGITRVVYAASSA 112

Query: 108 D 108
           D
Sbjct: 113 D 113


>gi|187919113|ref|YP_001888144.1| bifunctional deaminase-reductase domain-containing protein
           [Burkholderia phytofirmans PsJN]
 gi|187717551|gb|ACD18774.1| bifunctional deaminase-reductase domain protein [Burkholderia
           phytofirmans PsJN]
          Length = 225

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 7/113 (6%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVI-IVTENDDPVLALAFRKKNINIIYCD--CRDLKKL 278
           I +DP  +++  S    TAL + VI ++TE          +   ++ ++      DL K+
Sbjct: 84  ISIDPQGRVAWKSN---TALKSHVIEVLTEQVADDYLAYLQSIGVSYVFGGKTELDLGKV 140

Query: 279 LTILV-GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           +  L    GV  L+VEGG+ V+ +F+N+ LVD + +    +V G    PS  E
Sbjct: 141 VQTLARELGVKKLIVEGGSHVSGAFVNAGLVDEVSVLILPLVDGRSEHPSSFE 193


>gi|116872912|ref|YP_849693.1| zinc-binding, ComEB family competence protein [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|116741790|emb|CAK20914.1| zinc-binding, ComEB family competence protein [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 186

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 40/173 (23%)

Query: 1   MPVSSFDARFMSAALRFSRWHV---GLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP--- 53
           M   ++D  FM      ++ H+     T T   V   IV+D  +I  G      G     
Sbjct: 1   MQRIAWDQFFM------AQSHLISSRSTCTRLMVGATIVRDKRIIAGGYNGSIAGGDHCA 54

Query: 54  ---------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                          HAE+ A+ +    G     A  YVT  PC        C + II+ 
Sbjct: 55  EHGCYVVDGHCIRTIHAEMNAILQCAKFGASTDRAELYVTHFPCL------ACTKSIIQA 108

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
           GI++V    D  +   +   L+  +  G+ + ++   E  + ++ +   ++  
Sbjct: 109 GIKKVYFAKDYKNHPYA---LELFNIAGVELQKVEFDESVLQINNWNAEKMHT 158


>gi|313212148|emb|CBY16157.1| unnamed protein product [Oikopleura dioica]
          Length = 195

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 54/148 (36%), Gaps = 34/148 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVA-CLIVKDGIVIGRGVTAYGGC----------- 52
           S+D  FMS AL  S+           V  C+I K   ++G G                  
Sbjct: 10  SWDEYFMSIALLSSQRSK---DPATQVGACIINKKQRIVGIGYNGLPHGCSDKELPWGKT 66

Query: 53  -----------PHAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                       HAE+ A+    + +  G T + TL PC+       CA+ II+ GI +V
Sbjct: 67  GDWMETKYPYVCHAEMNAILNKNQADIDGGTIFTTLYPCNE------CAKLIIQSGISKV 120

Query: 101 VVCVDDP-DVRVSGRGLQWLSQKGIIVD 127
           V     P  V       + L   G+I+ 
Sbjct: 121 VYANKKPGSVPAFDASERLLKMAGVIIS 148


>gi|302697295|ref|XP_003038326.1| hypothetical protein SCHCODRAFT_63904 [Schizophyllum commune H4-8]
 gi|300112023|gb|EFJ03424.1| hypothetical protein SCHCODRAFT_63904 [Schizophyllum commune H4-8]
          Length = 194

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 23/129 (17%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
           +     ++M+ A+  ++    L +    V C+ V+D  +I               HAE++
Sbjct: 1   MEEVHLKWMAEAMNMAQEA--LDAGEVPVGCIFVRDNKIIASARNRTNELRNATRHAELE 58

Query: 59  ALEEAGEE-----------ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           A++    +               T YVT+EPC        CA  + + GI+ V     + 
Sbjct: 59  AIDRILADKTLTPEICEYPLDTTTLYVTVEPCIM------CASALRQLGIKEVFYGCGND 112

Query: 108 DVRVSGRGL 116
                G  L
Sbjct: 113 RFGGCGSVL 121


>gi|227873068|ref|ZP_03991362.1| dCMP deaminase [Oribacterium sinus F0268]
 gi|227841049|gb|EEJ51385.1| dCMP deaminase [Oribacterium sinus F0268]
          Length = 173

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 49/150 (32%), Gaps = 37/150 (24%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGC----------- 52
           S+D  FM      +         +  V   IV  D  ++  G   +              
Sbjct: 19  SWDEYFMGICTLSAHRSK---DPSTQVGACIVSPDHKILSMGYNGFPKGCSDDIFPWAKM 75

Query: 53  --------------PHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                          HAE+ A+    G    GAT YVTL PC+       CA+ II+ GI
Sbjct: 76  KAEQDPYNAKYFYVTHAELNAILNYRGGSLEGATIYVTLFPCNE------CAKAIIQSGI 129

Query: 98  RRVVVCVDDP-DVRVSGRGLQWLSQKGIIV 126
           + +V   D   D        + L   G+  
Sbjct: 130 KTLVYWEDIYADTPAVKASKRMLDAAGVRY 159


>gi|218135381|ref|ZP_03464185.1| hypothetical protein BACPEC_03286 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990766|gb|EEC56777.1| hypothetical protein BACPEC_03286 [Bacteroides pectinophilus ATCC
           43243]
          Length = 161

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 50/149 (33%), Gaps = 34/149 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA-------------YG 50
           S+D  FM  A+      +     N  V   IV KD  ++  G                  
Sbjct: 10  SWDEYFMGVAM---LSGMRSKDPNTQVGACIVSKDNKILSMGYNGLPRGCSDDEFPWCRE 66

Query: 51  GCP---------HAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           G P         H+E+ A+    G     A  YVTL PC+       CA+ II+ GI  V
Sbjct: 67  GDPLDNKYIYTAHSELNAILNYRGGSLENAKIYVTLFPCNE------CAKAIIQAGITTV 120

Query: 101 VVCVDDPDVRVS-GRGLQWLSQKGIIVDR 128
           V   D      S     +     G+   R
Sbjct: 121 VYDDDKYATSASVIASKRMFDAAGVRYYR 149


>gi|169335784|ref|ZP_02862977.1| hypothetical protein ANASTE_02209 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258522|gb|EDS72488.1| hypothetical protein ANASTE_02209 [Anaerofustis stercorihominis DSM
           17244]
          Length = 154

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 51/151 (33%), Gaps = 43/151 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D  FM   L   +        +  V  +IVKD  +I  G                   
Sbjct: 9   SWDEYFMEM-LEVVKTRSTCIRRH--VGAIIVKDHKIISTGYNGAPKGLAHCTKDTCVRL 65

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+  A   G    GA  Y+T  PC        C++ +I 
Sbjct: 66  KYNIKSGERHELCRATHAEQNAIISAATMGVSVEGADIYITDSPCI------LCSKMLIN 119

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            GI+R++     PD       L+ L++ GI 
Sbjct: 120 AGIKRIIYKGSYPD----EFSLELLNEAGIE 146


>gi|149239664|ref|XP_001525708.1| deoxycytidylate deaminase [Lodderomyces elongisporus NRRL YB-4239]
 gi|146451201|gb|EDK45457.1| deoxycytidylate deaminase [Lodderomyces elongisporus NRRL YB-4239]
          Length = 339

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 46/141 (32%), Gaps = 38/141 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           ++D+ FM  A   +            V C+IV++  V+  G                   
Sbjct: 189 NWDSYFMRLA-DLAALRSNCMKR--RVGCVIVRENRVVATGYNGTPRHLLNCNEGGCSRC 245

Query: 47  TAYGGCP---------HAEVQALEEAG-EEARG-ATAYVTLEPCSHYGRSPPCAQFIIEC 95
               G           HAE  AL EAG +  R  +  Y    PC        C+  I++ 
Sbjct: 246 NQGQGSGANLSTCLCLHAEENALLEAGRDRIRDESVLYCNTCPCL------TCSIKIVQS 299

Query: 96  GIRRVVVCVDDPDVRVSGRGL 116
           GIR VV          S + +
Sbjct: 300 GIREVVYAQSYSMDEQSHKVM 320


>gi|19113234|ref|NP_596442.1| deoxycytidylate deaminase (predicted) [Schizosaccharomyces pombe
           972h-]
 gi|74626715|sp|O43012|DCTD_SCHPO RecName: Full=Deoxycytidylate deaminase; AltName: Full=dCMP
           deaminase
 gi|2956780|emb|CAA17893.1| deoxycytidylate deaminase (predicted) [Schizosaccharomyces pombe]
          Length = 348

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 52/157 (33%), Gaps = 37/157 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-- 53
           S+D+ FM  A   +            V C++V+   VI  G             GGCP  
Sbjct: 199 SWDSYFMEMA-SLAAKRSNCMKR--RVGCVLVRGNRVIATGYNGTPRGATNCNEGGCPRC 255

Query: 54  ----------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                           HAE  AL EAG E  G  A +  + C        C+  I + GI
Sbjct: 256 NSASSCGKELDTCLCLHAEENALLEAGRERVGNNAILYCDTCPCL----TCSVKITQLGI 311

Query: 98  RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
           + VV         +       L   G+ + + +  E 
Sbjct: 312 KEVVY---HTSYNMDSHTASLLQAAGVQLRQYIPPEN 345


>gi|42527696|ref|NP_972794.1| deoxycytidylate deaminase, putative [Treponema denticola ATCC
           35405]
 gi|41818524|gb|AAS12713.1| deoxycytidylate deaminase, putative [Treponema denticola ATCC
           35405]
          Length = 165

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 53/156 (33%), Gaps = 43/156 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D  FM      ++     T       C+I +D  ++  G                   
Sbjct: 12  SWDEYFMDVCRAIAKRA---TCDRGRSGCVIARDHQILVTGYVGAPTGLPHCDDVGHQFK 68

Query: 47  ---TAYGG-------CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFII 93
                 G          HAE  A+ +A   G    GAT Y  + PC        CA  II
Sbjct: 69  KLQHEDGSVTQHCVRTVHAEQNAICQAAKRGISIDGATLYCKMTPC------RTCAMLII 122

Query: 94  ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            CGI RVV      D   S   ++   + GII++ +
Sbjct: 123 NCGIVRVVAEKRYHD---SADTIEMFKKAGIILEHI 155


>gi|261855466|ref|YP_003262749.1| Guanine deaminase [Halothiobacillus neapolitanus c2]
 gi|261835935|gb|ACX95702.1| Guanine deaminase [Halothiobacillus neapolitanus c2]
          Length = 163

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 41/118 (34%), Gaps = 20/118 (16%)

Query: 3   VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           V   + + M  A+ FSR  +  G          +I ++G VI  G            HAE
Sbjct: 6   VHEQEKQIMRQAIEFSREKMIAGFGGP---FGAVISRNGEVIATGFNQVTSANDPTAHAE 62

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           V A+  A +     +  G   Y + EPC      P C   I    + R+       D 
Sbjct: 63  VSAIRAACQVLNTFDLSGCEIYTSCEPC------PMCLSAIYWARLDRIYYANSRQDA 114


>gi|311993486|ref|YP_004010351.1| Cd dCMP deaminase [Acinetobacter phage Acj9]
 gi|295917443|gb|ADG60114.1| Cd dCMP deaminase [Acinetobacter phage Acj9]
          Length = 181

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 50/151 (33%), Gaps = 56/151 (37%)

Query: 31  VACLIVKDGIVIGRGV-----------------------------TAY------------ 49
           V  +I K+G +I  G                                             
Sbjct: 24  VGAVIAKNGRIISTGYNGSPAGGVNCCDHSKEQGWLGFINMHTPQHQRTYLKPECRSDHS 83

Query: 50  ----GGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE+ A+  A   G    GAT YVTL PC+       CA+ I   GIR++V 
Sbjct: 84  AWSSANEIHAELNAILYAAKNGLAIDGATMYVTLSPCAD------CAKAIANSGIRQLVY 137

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
              +   R S    + L   GI V ++ +S+
Sbjct: 138 S--EKYDRNSPGWEKILKDAGIEVFQIPKSQ 166


>gi|242765520|ref|XP_002340990.1| deoxycytidylate deaminase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218724186|gb|EED23603.1| deoxycytidylate deaminase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 388

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 47/149 (31%), Gaps = 41/149 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-- 53
           ++D  FM  A   +            V C+IV+D  VI  G             GGCP  
Sbjct: 225 TWDQYFMQLA-SLAAQRSNCMKR--RVGCVIVRDKRVISTGYNGTPRNITNCNEGGCPRC 281

Query: 54  ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                           HAE  AL EAG E    GA  Y    PC        C   I + 
Sbjct: 282 NRGEGGGAGLSTCLCIHAEENALLEAGRERIREGAILYCDTCPCL------TCTVKIAQV 335

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           GI  VV         +       LS  G+
Sbjct: 336 GISEVVY---SKSYNMDKESAAILSAAGV 361


>gi|312113039|ref|YP_004010635.1| CMP/dCMP deaminase zinc-binding protein [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311218168|gb|ADP69536.1| CMP/dCMP deaminase zinc-binding protein [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 157

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
           M  AL  +     L  T   V  ++V  DG + GRG            HAE++A+ +A E
Sbjct: 1   MQEALIEAERAAALGET--PVGAVVVAPDGSIAGRGHNLVISVRDPFGHAEMRAIRQACE 58

Query: 66  EAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             +     G   YVTLEPC        CA  I    IRR+     D        G+++ S
Sbjct: 59  AVQSERLPGYDLYVTLEPC------TMCAAAISFARIRRLYFGAWDEKGGAVENGVRFFS 112

Query: 121 QK 122
             
Sbjct: 113 AA 114


>gi|222055762|ref|YP_002538124.1| dCMP deaminase [Geobacter sp. FRC-32]
 gi|221565051|gb|ACM21023.1| dCMP deaminase [Geobacter sp. FRC-32]
          Length = 156

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 55/157 (35%), Gaps = 43/157 (27%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
           M   S+D  FM      ++    L      V  +IVKD  ++  G               
Sbjct: 1   MSRPSWDEYFMGITHLVAKRSTCLRR---QVGAIIVKDKNILATGYNGAPSGVSHCLDVG 57

Query: 47  -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE  A+ +A   G    G+T Y T  PC        C++
Sbjct: 58  CLREKLGIPSGERHELCRGLHAEQNAIIQAAKHGTGIEGSTLYCTTMPCII------CSK 111

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            II  GI+R+V  +  PD        + + + GIIVD
Sbjct: 112 MIINAGIKRIVFEMGYPDQLAE----EMIRESGIIVD 144


>gi|256371548|ref|YP_003109372.1| bifunctional deaminase-reductase domain protein [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008132|gb|ACU53699.1| bifunctional deaminase-reductase domain protein [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 221

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 63/193 (32%), Gaps = 39/193 (20%)

Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203
                   +   +  S D         S  +     ++ +  LRA + AILVG  T   +
Sbjct: 19  HFAPGTCRVIAVVIASLDGR-ATIDGRSGGLGSEADRSALAFLRATAQAILVGSATARDE 77

Query: 204 D--PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
              P L  R   L+               SL +++       P+ I T    P  A    
Sbjct: 78  GYGPAL-VRNEELR---------------SLRARLGIGGTEVPICIATRATAPDFA---- 117

Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVT--------SLLVEGGAAVAHSFINSRLVDSIIL 313
                       DL K+ T     G           LLVEGG  V  + +  RL+D + L
Sbjct: 118 --------ARAVDLDKIRTRADLFGACGVEPSAPGHLLVEGGPTVLATLLERRLIDELSL 169

Query: 314 YRSQIVIGEGGIP 326
             + IV G+   P
Sbjct: 170 TVAPIVAGQAEAP 182


>gi|153005122|ref|YP_001379447.1| CMP/dCMP deaminase [Anaeromyxobacter sp. Fw109-5]
 gi|152028695|gb|ABS26463.1| CMP/dCMP deaminase zinc-binding [Anaeromyxobacter sp. Fw109-5]
          Length = 164

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 53/156 (33%), Gaps = 35/156 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
           S+D  FM+ A   +      T     V  ++V+D  ++  G                   
Sbjct: 6   SWDEYFMNVARVVASRA---TCDRKHVGAVLVRDKTILSTGYNGSIRGLPHCSEAGHMME 62

Query: 48  --AYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  A+ +A   G    GAT Y T  PC       PC + I   G RR+V 
Sbjct: 63  DGHCVATVHAEANAIIQAAKNGVAIDGATIYTTASPCW------PCFKLIGNAGCRRIVF 116

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138
                D     R  ++  + GI +  +   E    L
Sbjct: 117 GEFYRD----ERIFEYAQRLGIELVELKVPERPDVL 148


>gi|52081108|ref|YP_079899.1| hypothetical protein BL02086 [Bacillus licheniformis ATCC 14580]
 gi|52786486|ref|YP_092315.1| hypothetical protein BLi02751 [Bacillus licheniformis ATCC 14580]
 gi|319644935|ref|ZP_07999168.1| late competence protein ComEB [Bacillus sp. BT1B_CT2]
 gi|18266365|gb|AAL67525.1|AF459916_2 late competence protein ComEB [Bacillus licheniformis]
 gi|52004319|gb|AAU24261.1| ComEB [Bacillus licheniformis ATCC 14580]
 gi|52348988|gb|AAU41622.1| ComEB [Bacillus licheniformis ATCC 14580]
 gi|317392744|gb|EFV73538.1| late competence protein ComEB [Bacillus sp. BT1B_CT2]
          Length = 189

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 59/162 (36%), Gaps = 34/162 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------ 53
           M   S+D  FM+ +   +      T T  +V   IV+D  +I  G      G        
Sbjct: 1   MERISWDQYFMAQSHLLALRS---TCTRLAVGATIVRDKRIIAGGYNGSIAGGVHCADEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A+ +    G    GA  YVT  PC        C + II+ GI+
Sbjct: 58  CYMVDGHCIRTIHAEMNAILQCAKFGVPTEGAEIYVTHFPCIQ------CCKSIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
            +    D  +   +   ++   Q  + V+++   E  I L  
Sbjct: 112 TIYYAKDYKNHPYA---VELFDQASVKVEQVELDEMIIDLKN 150


>gi|308272592|emb|CBX29196.1| hypothetical protein N47_J01770 [uncultured Desulfobacterium sp.]
          Length = 172

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 43/119 (36%), Gaps = 25/119 (21%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------H 54
           +      FM  AL  ++    L      V C++V    +I  G     G          H
Sbjct: 1   MKMDHEYFMEKALNLAQTA--LEQGEFPVGCVLVHKDKIIATG--KREGTAKSVLNEVDH 56

Query: 55  AEVQALEE-AGEEA------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           AE+ AL   AG +       +    Y T+EPC        C   I+  GI ++V   +D
Sbjct: 57  AEIIALRNLAGMKDYNEISRQEIIIYCTMEPCLM------CFGAILLAGIGKIVFAYED 109


>gi|322374651|ref|ZP_08049165.1| cytidine and deoxycytidylate deaminase family protein
           [Streptococcus sp. C300]
 gi|321280151|gb|EFX57190.1| cytidine and deoxycytidylate deaminase family protein
           [Streptococcus sp. C300]
          Length = 155

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 54/146 (36%), Gaps = 33/146 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
           ++D  F + AL  +      T     V  ++VKD  VI  G      G            
Sbjct: 7   AWDEYFAAQALLIANRS---TCKRAKVGAVLVKDNKVISTGYNGSVSGTEHCIDHECLVI 63

Query: 54  --------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                   HAEV A+ +  E    RG TAYVT  PC +      C + +++ G +RVV  
Sbjct: 64  EGHCVRTLHAEVNAILQGAERGVPRGFTAYVTHFPCLN------CTKQLLQVGCKRVVYI 117

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRM 129
                 R+         +KG  +  +
Sbjct: 118 NQY---RMDDYAQYLYQEKGTELTHL 140


>gi|254384103|ref|ZP_04999448.1| cytidine/deoxycytidine deaminase [Streptomyces sp. Mg1]
 gi|194342993|gb|EDX23959.1| cytidine/deoxycytidine deaminase [Streptomyces sp. Mg1]
          Length = 142

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 23/147 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----CPHAEVQALEEAGE 65
           M  ALR +   V   + +  V  +++  DG ++  G            HAEV AL  A  
Sbjct: 1   MRLALREAARAVP--AGDVPVGAVVLGPDGELLATGYNEREATGDPTAHAEVLALRRAAA 58

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-- 118
                   G T  VTLEPC        CA  +++  + RVV    D     +G       
Sbjct: 59  ALGEWRLPGCTLVVTLEPC------VMCAGALVQARVARVVYGAGDEKAGAAGSLWDLVR 112

Query: 119 ---LSQKGIIVDRMMESEGKIFLHAYL 142
              L+ +  ++  ++  E    L  + 
Sbjct: 113 DRRLNHRPEVIRGVLAEECARQLTDFF 139


>gi|79361008|ref|NP_564523.3| emb2191 (embryo defective 2191); catalytic/ hydrolase/ zinc ion
           binding [Arabidopsis thaliana]
 gi|48310033|gb|AAT41740.1| At1g48175 [Arabidopsis thaliana]
 gi|50198832|gb|AAT70448.1| At1g48175 [Arabidopsis thaliana]
 gi|332194138|gb|AEE32259.1| Cytidine/deoxycytidylate deaminase family protein [Arabidopsis
           thaliana]
          Length = 182

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 55/167 (32%), Gaps = 35/167 (20%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE---- 61
           +M  AL  ++    L +    V C+ ++DG VI  G            HAE++A++    
Sbjct: 12  YMGFALHQAKLA--LEALEVPVGCVFLEDGKVIASGRNRTNETRNATRHAEMEAIDQLVG 69

Query: 62  ----------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
                     +  E+      YVT EPC        CA  +   GI+ V     +     
Sbjct: 70  QWQKDGLSPSQVAEKFSKCVLYVTCEPCIM------CASALSFLGIKEVYYGCPNDKFGG 123

Query: 112 SGRGLQWL-------SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSH 151
            G  L            KG      + +E  + L  +     +   +
Sbjct: 124 CGSILSLHLGSEEAQRGKGYKCRGGIMAEEAVSL--FKCFYEQGNPN 168


>gi|218780678|ref|YP_002431996.1| CMP/dCMP deaminase zinc-binding [Desulfatibacillum alkenivorans
           AK-01]
 gi|218762062|gb|ACL04528.1| CMP/dCMP deaminase zinc-binding [Desulfatibacillum alkenivorans
           AK-01]
          Length = 156

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 52/149 (34%), Gaps = 23/149 (15%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----CPHAEVQALEEA 63
           ++M  AL  ++           V  ++V  D  +I +      G      HAE+ AL EA
Sbjct: 6   KYMQMALDEAKTAW--DEDEVPVGAVLVLPDQDLIIKAHNRTIGLNDAAAHAEILALREA 63

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           G          +  Y T+EPC        C   +I   + +VV    D      G    +
Sbjct: 64  GRVIGNYRLLNSVLYCTVEPCIM------CMGAVIHARVSKVVFGAPDLKWGACGSLYDF 117

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYL 142
            S  G+     IV  + E   +  +  + 
Sbjct: 118 ASDPGLNHHPEIVSGVCEEACRTIMQEFF 146


>gi|58177055|pdb|1VQ2|A Chain A, Crystal Structure Of T4-Bacteriophage Deoxycytidylate
           Deaminase, Mutant R115e
          Length = 193

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 46/176 (26%), Gaps = 68/176 (38%)

Query: 31  VACLIVKDGIVIGRGV-------------------------------------------- 46
           V  +I K+G +I  G                                             
Sbjct: 24  VGAVIEKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAIIQGHKPECVSFGSTDR 83

Query: 47  ------TAYGGCP-------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE+ A+    E G    GAT YVTL PC      P CA+
Sbjct: 84  FVLAKEHRSAHSEWSSKNEIHAELNAILFAAENGSSIEGATMYVTLSPC------PDCAK 137

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQV 146
            I + GI+++V C               L   GI V  + +          +    
Sbjct: 138 AIAQSGIKKLVYCETYDK--NKPGWDDILRNAGIEVFNVPKKNLNKLNWENINEFC 191


>gi|222624837|gb|EEE58969.1| hypothetical protein OsJ_10660 [Oryza sativa Japonica Group]
          Length = 169

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 44/127 (34%), Gaps = 32/127 (25%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE------- 61
            FM  AL  +++   L +    V C+IV+DG              HAE++A++       
Sbjct: 7   EFMELALEQAKFA--LDNLEVPVGCVIVEDGK----------ATRHAEMEAIDILLREWQ 54

Query: 62  -------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
                  +  E+      YVT EPC        CA  +   GIR V     +      G 
Sbjct: 55  GMGLDQPQVAEKFARCDLYVTCEPCIM------CAMALSILGIREVYFGCANDKFGGCGS 108

Query: 115 GLQWLSQ 121
            +     
Sbjct: 109 IMSLHQS 115


>gi|139439263|ref|ZP_01772705.1| Hypothetical protein COLAER_01720 [Collinsella aerofaciens ATCC
           25986]
 gi|133775287|gb|EBA39107.1| Hypothetical protein COLAER_01720 [Collinsella aerofaciens ATCC
           25986]
          Length = 593

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 52/156 (33%), Gaps = 22/156 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           M  +  D +FMS     +            +  ++V+ G ++ R             HAE
Sbjct: 1   MTSTGIDEKFMSE--ALAEARAAAAVGEVPIGAVVVRAGEIVARAHNRRELDQDPSAHAE 58

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
             AL  A +          T YVTLEPC        CA  ++   + R V    D     
Sbjct: 59  FSALCAAAQSLGRWRLSDCTVYVTLEPCCM------CAGLMVNARVGRCVYGAADAKAGA 112

Query: 112 SGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
            G          L+ +  +   ++  E +  L +Y 
Sbjct: 113 LGSLYDLNADSRLNHRFNVRAGVLADECREVLSSYF 148


>gi|293365055|ref|ZP_06611772.1| cytidine and deoxycytidylate deaminase [Streptococcus oralis ATCC
           35037]
 gi|307702235|ref|ZP_07639195.1| comE operon protein 2 [Streptococcus oralis ATCC 35037]
 gi|291316505|gb|EFE56941.1| cytidine and deoxycytidylate deaminase [Streptococcus oralis ATCC
           35037]
 gi|307624248|gb|EFO03225.1| comE operon protein 2 [Streptococcus oralis ATCC 35037]
          Length = 155

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 54/149 (36%), Gaps = 33/149 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
           ++D  F + AL  +      T     V  ++VKD  VI  G      G            
Sbjct: 7   AWDEYFAAQALLIANRS---TCKRAKVGAVLVKDNKVISTGYNGSVSGTEHCIDHECLVI 63

Query: 54  --------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                   HAEV A+ +  E    RG TAYVT  PC +      C + +++ G +RVV  
Sbjct: 64  EGHCVRTLHAEVNAILQGAERGVPRGFTAYVTHFPCLN------CTKQLLQVGCKRVVYI 117

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
                 R+         +KG  +  +   
Sbjct: 118 NQY---RMDDYAQYLYQEKGTELTHLPLE 143


>gi|126662522|ref|ZP_01733521.1| putative deoxycytidylate deaminase [Flavobacteria bacterium BAL38]
 gi|126625901|gb|EAZ96590.1| putative deoxycytidylate deaminase [Flavobacteria bacterium BAL38]
          Length = 142

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 38/144 (26%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
           +D  ++  A     W          V  +IVK+ ++I  G     G P            
Sbjct: 9   YDKAYLRIAKE---WGNLSYCQRKKVGAIIVKNKMIISDGY---NGTPSGFENCCEDDAN 62

Query: 54  -------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A+     + +    AT Y+TL PC        C++ I + GI+RVV  
Sbjct: 63  ITKWYVLHAEANAILKVARSTQSCEDATLYITLSPC------KDCSKLIHQSGIKRVVYH 116

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD 127
            +  D      G+ +L + G+ V+
Sbjct: 117 QEYKDT----SGVDFLRKAGVEVE 136


>gi|229829440|ref|ZP_04455509.1| hypothetical protein GCWU000342_01530 [Shuttleworthia satelles DSM
           14600]
 gi|229791871|gb|EEP27985.1| hypothetical protein GCWU000342_01530 [Shuttleworthia satelles DSM
           14600]
          Length = 191

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 49/149 (32%), Gaps = 34/149 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT---------------- 47
           S+D  FM  A   +   +     N  V   IV     ++  G                  
Sbjct: 40  SWDEYFMGVA---ALAGMRSKDPNTQVGACIVSSQNKILSIGYNGLPIGCSDDEFPWNRE 96

Query: 48  ------AYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                  Y    H+E+ A+    G    G   YVTL PC+       CA+ II+ GI+ +
Sbjct: 97  GNPLENKYFYTTHSELNAILNYRGGSLEGTKMYVTLFPCNE------CAKAIIQAGIKEI 150

Query: 101 VVCVDDP-DVRVSGRGLQWLSQKGIIVDR 128
           +   D   D        + L   GI   R
Sbjct: 151 IFKTDKYADTPSVIASKRMLKAAGISCRR 179


>gi|228993069|ref|ZP_04152992.1| ComE operon protein 2 [Bacillus pseudomycoides DSM 12442]
 gi|228999119|ref|ZP_04158701.1| ComE operon protein 2 [Bacillus mycoides Rock3-17]
 gi|229006667|ref|ZP_04164301.1| ComE operon protein 2 [Bacillus mycoides Rock1-4]
 gi|228754528|gb|EEM03939.1| ComE operon protein 2 [Bacillus mycoides Rock1-4]
 gi|228760736|gb|EEM09700.1| ComE operon protein 2 [Bacillus mycoides Rock3-17]
 gi|228766717|gb|EEM15357.1| ComE operon protein 2 [Bacillus pseudomycoides DSM 12442]
          Length = 185

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 55/166 (33%), Gaps = 34/166 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------ 53
           M   S+D  FM+ +   S      T T  +V   IV+D  +I  G      G        
Sbjct: 1   MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSITGGVHCIDDG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +  GA  YVT  PC        C + II+ GI 
Sbjct: 58  CYIIDNHCVRTIHAEMNALLQCAKFGAKTEGAEIYVTHFPCLQ------CCKAIIQSGIT 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            V    D  +   +   ++   Q  + V  +        L      
Sbjct: 112 AVYYAQDYKNHPYA---VELFEQANVTVKHVPLEYDITTLEQQERH 154


>gi|150951310|ref|XP_001387615.2| deoxycytidylate deaminase [Scheffersomyces stipitis CBS 6054]
 gi|149388487|gb|EAZ63592.2| deoxycytidylate deaminase [Pichia stipitis CBS 6054]
          Length = 341

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 46/141 (32%), Gaps = 38/141 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-------------- 50
           ++D+ FM  A   +            V  +IV +  VI  G                   
Sbjct: 191 TWDSYFMRLA-DLAALRSNCMKR--RVGAVIVHENRVIATGYNGTPRHLTNCNEGGCDRC 247

Query: 51  -----GCP--------HAEVQALEEAG-EEARG-ATAYVTLEPCSHYGRSPPCAQFIIEC 95
                G          HAE  AL EAG +  RG A  Y    PC        C+  I++ 
Sbjct: 248 NKGSVGGTSLLTCLCLHAEENALLEAGRDRIRGEAVLYCNTCPCL------TCSIKIVQS 301

Query: 96  GIRRVVVCVDDPDVRVSGRGL 116
           GI+ VV         +S + +
Sbjct: 302 GIKEVVYAQSYFMDSLSHKVM 322


>gi|187780095|ref|ZP_02996568.1| hypothetical protein CLOSPO_03691 [Clostridium sporogenes ATCC
           15579]
 gi|187773720|gb|EDU37522.1| hypothetical protein CLOSPO_03691 [Clostridium sporogenes ATCC
           15579]
          Length = 157

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 32/90 (35%), Gaps = 15/90 (16%)

Query: 30  SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
                IVKDG VI        G      H EV A+ +A +     +  G   Y T EPC 
Sbjct: 25  PFGSAIVKDGKVIAVAHNTVIGDNDPTAHGEVNAIRQACKKLNTFDLSGCELYTTSEPC- 83

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
                P C   II   I +V       D R
Sbjct: 84  -----PMCMSAIIWANISKVYYGCTVEDAR 108


>gi|23098182|ref|NP_691648.1| hypothetical protein OB0727 [Oceanobacillus iheyensis HTE831]
 gi|22776407|dbj|BAC12683.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 179

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 3/102 (2%)

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
           V +     +N N+I+ +  D+K+ + +L  +    + + GG  +  SFI   L+D  I+ 
Sbjct: 77  VFSRKESGRNENVIFVN-DDVKRFIQMLQKKEGRDIWIVGGGELLTSFIEQDLIDEYIIT 135

Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
            + I++GE GIP   +E     N   +    F   + L Y  
Sbjct: 136 IAPIILGE-GIP-LFKECSSTINLSLIGTQKFNQFIELHYER 175


>gi|315056975|ref|XP_003177862.1| hypothetical protein MGYG_08953 [Arthroderma gypseum CBS 118893]
 gi|311339708|gb|EFQ98910.1| hypothetical protein MGYG_08953 [Arthroderma gypseum CBS 118893]
          Length = 348

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 48/149 (32%), Gaps = 41/149 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-- 53
           ++D  FM  A   +            V C++VKD  V+  G             GGCP  
Sbjct: 185 AWDQYFMQLA-SLAAQRSNCMKR--RVGCVVVKDNRVMSTGYNGTPRNVKNCNEGGCPRC 241

Query: 54  ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                           HAE  AL EAG +    G+  Y    PC        C+  I + 
Sbjct: 242 NLGQAGGTVLSTCLCIHAEENALLEAGRQRIGEGSILYCDTCPCL------TCSVKIAQV 295

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           GI  VV         +       L + G+
Sbjct: 296 GISEVVYSQGY---HMDSDSAAVLKEAGV 321


>gi|302835481|ref|XP_002949302.1| hypothetical protein VOLCADRAFT_89616 [Volvox carteri f.
           nagariensis]
 gi|300265604|gb|EFJ49795.1| hypothetical protein VOLCADRAFT_89616 [Volvox carteri f.
           nagariensis]
          Length = 192

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 40/124 (32%), Gaps = 17/124 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
            S+ D  +M                   V  ++V    ++ RG            HAE+ 
Sbjct: 34  FSAADVHYMGM--ALDEARAAAAEGEVPVGAVLVHGDRILARGHNRVHRLRSPVAHAEML 91

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            +     +       GAT Y TLEPC      P CA  I++  I RVV          + 
Sbjct: 92  CITAGASKLSSWRLLGATLYATLEPC------PMCAGAILQARIARVVYGCKARHRAEAT 145

Query: 114 RGLQ 117
              +
Sbjct: 146 HAAE 149


>gi|291460249|ref|ZP_06599639.1| putative deoxycytidylate deaminase [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291417196|gb|EFE90915.1| putative deoxycytidylate deaminase [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 166

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 53/155 (34%), Gaps = 37/155 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT---------------- 47
           S++  FM  A   +R        +  V   IV +D  ++  G                  
Sbjct: 12  SWEEYFMGVAEMSARRSK---DPSTQVGACIVSRDNKILSMGYNGFPRGCSDDLFPWTKI 68

Query: 48  ---------AYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                     Y    HAE+ A+    G    GA  YVTL PC+       CA+ +I+ GI
Sbjct: 69  HVSDDPYNAKYFYSTHAELNAILNYRGGSLEGAKLYVTLFPCNE------CAKALIQAGI 122

Query: 98  RRVVVCVDDP-DVRVSGRGLQWLSQKGIIVDRMME 131
           + +V   D   D        + L   G+   +  E
Sbjct: 123 KTLVYREDKYADTPELRASRRMLDAAGVRYYQYQE 157


>gi|104782249|ref|YP_608747.1| deaminase [Pseudomonas entomophila L48]
 gi|95111236|emb|CAK15956.1| putative deaminase [Pseudomonas entomophila L48]
          Length = 152

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 41/113 (36%), Gaps = 23/113 (20%)

Query: 8   ARFMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
             +M  AL  +R      G          ++V  G VI R V           HAE+QA+
Sbjct: 4   ETYMREALDLARANIQAGGR-----PFGAVLVYQGRVIARAVNEIHSTQDPTRHAEMQAI 58

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            +A E        GA  Y +  PC      P C   +  CGI R     D+ +
Sbjct: 59  RQASEVLGRARLDGAEIYASGHPC------PMCLAAMHLCGIERAWFAYDNEE 105


>gi|325270746|ref|ZP_08137337.1| guanine deaminase [Prevotella multiformis DSM 16608]
 gi|324986862|gb|EGC18854.1| guanine deaminase [Prevotella multiformis DSM 16608]
          Length = 155

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 37/115 (32%), Gaps = 25/115 (21%)

Query: 8   ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
              M  A++ S    R   G          +I ++G +I  G            HAEV  
Sbjct: 4   EELMRRAVKLSADSVRNGGG------PFGAVIARNGEIIAEGSNGVTIYNDPTAHAEVSV 57

Query: 60  LEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           + +A  +       G   Y + EPC      P C   I    + ++    D  D 
Sbjct: 58  IRKACHQLHTFDLTGCEIYTSCEPC------PMCLGAIYWAHLDKIYYANDRKDA 106


>gi|260579466|ref|ZP_05847346.1| cytidine/deoxycytidylate deaminase family protein [Corynebacterium
           jeikeium ATCC 43734]
 gi|258602409|gb|EEW15706.1| cytidine/deoxycytidylate deaminase family protein [Corynebacterium
           jeikeium ATCC 43734]
          Length = 193

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 58/162 (35%), Gaps = 27/162 (16%)

Query: 1   MPVSSFDARF---MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----C 52
           +P  + DAR    M  AL  +       + +  V  +I+  DG  +GRGV          
Sbjct: 39  LPQVAGDARAEALMRRALDVAAE---TPAGDVPVGAVILGPDGRELGRGVNRREADNDPT 95

Query: 53  PHAEVQALEEA------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
            HAE+ A+ EA             T  VTLEPC+       CA  ++   I  ++    +
Sbjct: 96  AHAEILAIREAVQELGDAWRLEDCTLVVTLEPCAM------CAGALVGARIGSIIFGAYE 149

Query: 107 PDVRVSGRGLQWLSQK----GIIVDRMMESEGKIFLHAYLTR 144
           P     G       +       +   ++  E +  L  +  R
Sbjct: 150 PRTGACGSVWDVPRESPLHWVEVRGGVLAGECEELLRQFFAR 191


>gi|27381264|ref|NP_772793.1| hypothetical protein blr6153 [Bradyrhizobium japonicum USDA 110]
 gi|27354431|dbj|BAC51418.1| blr6153 [Bradyrhizobium japonicum USDA 110]
          Length = 159

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 45/113 (39%), Gaps = 18/113 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGR---GVTAYG-GCPHAEVQA 59
           + D  F+  +   +R    LT  N    C++V  DG V+     G      G  HAE  A
Sbjct: 4   ARDEHFLRLSFAVARRS--LTHGNHPFGCVVVAADGKVLIETENGYMPDCDGTAHAERLA 61

Query: 60  LEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
             +A      E    AT Y + EPC+       CA  I   GI RVV  + + 
Sbjct: 62  ATQACRTLSREVLAEATLYSSAEPCAM------CAGAIYWAGIGRVVYGLSEH 108


>gi|296333283|ref|ZP_06875736.1| putative enzyme associated to DNA transport (competence) [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305675213|ref|YP_003866885.1| hypothetical protein BSUW23_12690 [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296149481|gb|EFG90377.1| putative enzyme associated to DNA transport (competence) [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305413457|gb|ADM38576.1| putative enzyme associated with DNA transport (competence)
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 189

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 57/162 (35%), Gaps = 34/162 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------ 53
           M   S++  FM+ +   +      T    SV   IV+D  +I  G      G        
Sbjct: 1   MERISWNQYFMAQSHLLALRS---TCPRLSVGATIVRDKRMIAGGYNGSIAGGVHCADEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A+ +    G    GA  YVT  PC        C + II+ GI+
Sbjct: 58  CLMIDDHCARTIHAEMNAILQCSKFGVPTDGAEIYVTHYPCIQ------CCKSIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
            V    D      +    +   Q G+ V+++   E  + L  
Sbjct: 112 TVYYAEDYKTNPYAQ---ELFEQAGVTVEQVELDEMIVDLKN 150


>gi|291084824|ref|ZP_06542690.2| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
          enterica serovar Typhi str. AG3]
          Length = 76

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 7/69 (10%)

Query: 1  MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
          M     D   +M  AL  ++           V  ++V +  VIG G     G      HA
Sbjct: 1  MSDVELDHEYWMRHALTLAKRAWDERE--VPVGAVLVHNHRVIGEGWNRPIGRHDPTAHA 58

Query: 56 EVQALEEAG 64
          E+ AL + G
Sbjct: 59 EIMALRQGG 67


>gi|114762709|ref|ZP_01442143.1| probable riboflavin-specific deaminase [Pelagibaca bermudensis
           HTCC2601]
 gi|114544619|gb|EAU47625.1| probable riboflavin-specific deaminase [Roseovarius sp. HTCC2601]
          Length = 233

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 5/111 (4%)

Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKK 277
           + I +D H  L  +S  +    L  V++++E            + +++I+   +   L+ 
Sbjct: 83  LAICVDRHGTLHPESGELDGEHL--VLVLSEQVPDAHVEMLIARGVSVIFAGPEGDQLED 140

Query: 278 LLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
            L  +    GV+ LL+EGG  +  +F+ + L+D        +V G+ G+ S
Sbjct: 141 ALIRIGEAFGVSRLLLEGGGRMNGAFLAADLIDETSTLIYPVVDGQSGVAS 191


>gi|313608725|gb|EFR84550.1| ComE operon protein 2 [Listeria monocytogenes FSL F2-208]
          Length = 186

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 40/173 (23%)

Query: 1   MPVSSFDARFMSAALRFSRWHV---GLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP--- 53
           M   ++D  FM      ++ H+     T T   V   IV+D  +I  G      G     
Sbjct: 1   MQRIAWDQFFM------AQSHLISSRSTCTRLMVGATIVRDKRIIAGGYNGSIAGGDHCA 54

Query: 54  ---------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                          HAE+ A+ +    G     A  YVT  PC        C + II+ 
Sbjct: 55  EHGCYVVDGHCIRTIHAEMNAILQCAKFGATTDKAELYVTHFPCL------ACTKSIIQA 108

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
           GI++V    D  +   +   L+  +  G+ + ++   E  + ++ +   ++  
Sbjct: 109 GIKKVYFAKDYKNHPYA---LELFNIAGVELQKVEFDESVLQVNNWNGEKMHT 158


>gi|325970393|ref|YP_004246584.1| dCMP deaminase [Spirochaeta sp. Buddy]
 gi|324025631|gb|ADY12390.1| dCMP deaminase [Spirochaeta sp. Buddy]
          Length = 161

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 59/162 (36%), Gaps = 33/162 (20%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVA-CLIVKDGIVIGRGV----------------- 46
           S+D  FM  A+  S         +  V  C+I  D  ++G G                  
Sbjct: 9   SWDEYFMGVAVLSSMRSK---DPSTQVGACIINADHKIVGVGYNGFPIGVNDDEVPWERE 65

Query: 47  -----TAYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                T Y    HAE+ A+  A     +G + YV L PC+       CA+ II+ GIR V
Sbjct: 66  GAWLDTKYPYVCHAELNAILNAISSSLKGCSLYVGLFPCNE------CAKAIIQSGIREV 119

Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
           V   D      + +  +W+  +  +  R +E      L    
Sbjct: 120 VYLSDKYAEAENTKASKWMFDQTGVTYRKLEPAHSSILVQMQ 161


>gi|154247024|ref|YP_001417982.1| CMP/dCMP deaminase zinc-binding [Xanthobacter autotrophicus Py2]
 gi|154161109|gb|ABS68325.1| CMP/dCMP deaminase zinc-binding [Xanthobacter autotrophicus Py2]
          Length = 147

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 39/108 (36%), Gaps = 17/108 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           +M  AL  +R           V  ++V+   VI R             HAEV  L  AG 
Sbjct: 5   YMQMALNEARAAAER--GEVPVGAVLVRGAEVIARDGNRTRELNDPTAHAEVLVLRTAGA 62

Query: 66  EAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
             +         YVTLEPC+       CA  +    IRR+     DP 
Sbjct: 63  RLKSERLVNCDLYVTLEPCAM------CAAALSFARIRRLYYGASDPK 104


>gi|296532454|ref|ZP_06895178.1| deoxycytidylate deaminase [Roseomonas cervicalis ATCC 49957]
 gi|296267229|gb|EFH13130.1| deoxycytidylate deaminase [Roseomonas cervicalis ATCC 49957]
          Length = 201

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 55/153 (35%), Gaps = 33/153 (21%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYGG------------ 51
           +D+R++  A   ++W          V  ++V      ++  G   +              
Sbjct: 17  WDSRYIGLAHHIAQWSK---DPRAKVGAVLVNQPQARIVATGFNGFPSNVEDSAERLQDK 73

Query: 52  ------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                   HAE  AL  AG  ARG  AYV  +P  +      CA  +I+ G++RVV    
Sbjct: 74  ATKLRMMVHAEQNALLHAGHNARGCDAYVVGKPVCNT-----CATLLIQAGVKRVVAAAP 128

Query: 106 -----DPDVRVSGRGLQWLSQKGIIVDRMMESE 133
                    RV    +  L + G+    +  ++
Sbjct: 129 REGTASYWDRVGLLSIAMLREAGVEFTPISGAQ 161


>gi|254568360|ref|XP_002491290.1| Subunit of tRNA-specific adenosine-34 deaminase [Pichia pastoris
           GS115]
 gi|238031087|emb|CAY69010.1| Subunit of tRNA-specific adenosine-34 deaminase [Pichia pastoris
           GS115]
 gi|328352193|emb|CCA38592.1| hypothetical protein PP7435_Chr2-0910 [Pichia pastoris CBS 7435]
          Length = 220

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 63/189 (33%), Gaps = 28/189 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEE--- 62
           FM  AL  ++  + L      + C+ V    +I +G         G  HAE++A++E   
Sbjct: 9   FMKKALDAAQ--IALDELEVPIGCIFVYKNKIIAQGSNKTNATSCGINHAEMEAIDEIIA 66

Query: 63  ----AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                 E    A  YVT+EPC        CA  + + GIRRV     +     +G  L  
Sbjct: 67  KYPNYKEILPFADLYVTVEPCIM------CASALRQLGIRRVFFGCANDRFGGNGSVLTI 120

Query: 119 LSQKGI---------IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC 169
            S K           +   +   E    L  +   Q EK  +   K     D        
Sbjct: 121 HSDKLNNKLDSSIYPVYPGIYAKEAVTLLRKFYLNQNEKSPNPQTKKLRQLDMENFPRLQ 180

Query: 170 GSVPITGFI 178
               +T   
Sbjct: 181 FEKYLTKEQ 189


>gi|302340024|ref|YP_003805230.1| hypothetical protein Spirs_3548 [Spirochaeta smaragdinae DSM 11293]
 gi|301637209|gb|ADK82636.1| conserved hypothetical protein [Spirochaeta smaragdinae DSM 11293]
          Length = 311

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 65/178 (36%), Gaps = 40/178 (22%)

Query: 186 LRAQSDAILVGIGTVLADDPELTCRL----------NGLQEHSPMRIILDPHF-KLSLDS 234
           LRA SDA+++G  T+  + P LT R+             +   P+ +IL      L LD 
Sbjct: 98  LRAASDAVIMGSLTIKRE-PRLTGRIFDPALLEQRCVEGRMPVPLHVILSRSGANLPLDH 156

Query: 235 KIIKTALLAPVIIVTENDDPVLAL-------------------------AFRKKNINIIY 269
           +I     +  V +++ +    L                               +++ +  
Sbjct: 157 RIYADDTIPVVTVLSPSGAAALKKRDPDRFIPFSGGREELSHYLGGEKEGLWHRSLLLPA 216

Query: 270 CDCRDL--KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
            +   L   +++ +L G G+   LVE       S + S  +D + L  S I +G   +
Sbjct: 217 GEGDQLLSSEVVRLLAGAGIRRALVES-PTFLASLLASGDLDELFLNTSGIFVGGKAL 273


>gi|229135152|ref|ZP_04263952.1| ComE operon protein 2 [Bacillus cereus BDRD-ST196]
 gi|228648280|gb|EEL04315.1| ComE operon protein 2 [Bacillus cereus BDRD-ST196]
          Length = 188

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 56/166 (33%), Gaps = 34/166 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M   S+D  FM+ +   S      T T  +V   IV+D  +I  G      GG       
Sbjct: 4   MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +  GA  YVT  PC        C + II+ G+ 
Sbjct: 61  CYVIDNHCVRTIHAEMNALLQCAKFGAKTEGAEIYVTHFPCLQ------CCKAIIQSGVT 114

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            V    D  +   +   ++   Q  + V  +        L      
Sbjct: 115 AVYYAQDYKNHPYA---VELFEQASVTVKHVPLEYDITSLEEQERH 157


>gi|227506029|ref|ZP_03936078.1| nucleoside deaminase [Corynebacterium striatum ATCC 6940]
 gi|227197311|gb|EEI77359.1| nucleoside deaminase [Corynebacterium striatum ATCC 6940]
          Length = 156

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 42/129 (32%), Gaps = 22/129 (17%)

Query: 30  SVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEA------GEEARGATAYVTLEP 78
            V  ++    G  +  GV           HAEV+A+  A      G    G    VTLEP
Sbjct: 30  PVGAVLYDAAGNELSTGVNRREQRGDPTAHAEVEAIRAAVAKHGNGWRLEGCEIVVTLEP 89

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-----IIVDRMMESE 133
           C+       CA  I    +  VV    +P     G  +  L   G      +   + E E
Sbjct: 90  CAM------CAGAIQGARVASVVFGAFEPKTGACGSLVDVLRAPGSLHVPEVRAGVCEEE 143

Query: 134 GKIFLHAYL 142
               L  + 
Sbjct: 144 CAGLLTGFF 152


>gi|240274201|gb|EER37719.1| deoxycytidylate deaminase [Ajellomyces capsulatus H143]
          Length = 385

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 47/148 (31%), Gaps = 41/148 (27%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP--- 53
           +D  FM  A   +            V C++V+   V+  G             GGCP   
Sbjct: 215 WDQYFMQLA-SLAAQRSNCMKR--RVGCVLVRGRRVMSTGYNGTPRNTKNCNEGGCPRCN 271

Query: 54  ---------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                          HAE  AL EAG E    GAT Y    PC        C+  I + G
Sbjct: 272 CGEGGGAALSTCLCIHAEENALLEAGRERIGEGATLYCNTCPCL------TCSVKIAQLG 325

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           I  VV         +       L + G+
Sbjct: 326 ISEVVYSQSY---NMDNETASILKEAGV 350


>gi|237715975|ref|ZP_04546456.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. D1]
 gi|237722247|ref|ZP_04552728.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 2_2_4]
 gi|262407589|ref|ZP_06084137.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645725|ref|ZP_06723411.1| guanine deaminase [Bacteroides ovatus SD CC 2a]
 gi|294808352|ref|ZP_06767107.1| guanine deaminase [Bacteroides xylanisolvens SD CC 1b]
 gi|229443622|gb|EEO49413.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. D1]
 gi|229448057|gb|EEO53848.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 2_2_4]
 gi|262354397|gb|EEZ03489.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638931|gb|EFF57263.1| guanine deaminase [Bacteroides ovatus SD CC 2a]
 gi|294444428|gb|EFG13140.1| guanine deaminase [Bacteroides xylanisolvens SD CC 1b]
 gi|295085135|emb|CBK66658.1| Cytosine/adenosine deaminases [Bacteroides xylanisolvens XB1A]
          Length = 156

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 18/114 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGG----CPHAEVQALEE 62
              M  A+  S+ +V           +I  KDG ++  GV           HAEV A+  
Sbjct: 4   EALMRKAIELSKENVENGGG--PFGAVIATKDGEIVATGVNRVTASCDPTAHAEVSAIRA 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           A       +  G   Y + EPC      P C   I    + ++    +  D + 
Sbjct: 62  AAAKLGTFDLSGYEIYTSCEPC------PMCLGAIYWARLDKMYYGNNKTDAKN 109


>gi|167903219|ref|ZP_02490424.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|254179364|ref|ZP_04885963.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           pseudomallei 1655]
 gi|184209904|gb|EDU06947.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           pseudomallei 1655]
          Length = 198

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 49/142 (34%), Gaps = 20/142 (14%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  +IV+   VI RG     G      HAE+ AL  A          G   YVTLEPC 
Sbjct: 54  PVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAALRAAARALRNYRMPGCELYVTLEPCL 113

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  C+  I+   I RVV    DP     G  +       L+    +   ++  E  
Sbjct: 114 M------CSGAIMHARIGRVVFGAPDPKTGACGSVVDAFADARLNHHTTVEGGVLADECG 167

Query: 136 IFLHAYLTRQVEKRSHITLKIA 157
             L ++  ++ +          
Sbjct: 168 AVLKSFFAQRRQAVREARRAQQ 189


>gi|331092051|ref|ZP_08340882.1| hypothetical protein HMPREF9477_01525 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402252|gb|EGG81823.1| hypothetical protein HMPREF9477_01525 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 162

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 55/152 (36%), Gaps = 35/152 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
           S+D  FM  A+      +     +  V C IV +D  ++  G                  
Sbjct: 10  SWDEYFMGVAM---LSGMRSKDPSTQVGCCIVSQDNKILSMGYNGLPKGCSDDEFPWTRE 66

Query: 47  ------TAYGGCPHAEVQALEE-AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    H+E+ A+   +G    GA  YV+L PC+       CA+ II+ GI+ 
Sbjct: 67  GEDPLETKYVYTVHSELNAILNYSGGSLAGAKLYVSLFPCNE------CAKAIIQSGIKE 120

Query: 100 VVVCVDDP-DVRVSGRGLQWLSQKGIIVDRMM 130
           VV   D   D        + +   G+   +  
Sbjct: 121 VVYDSDKYADTASVMASKRMMDCAGVRYHQYH 152


>gi|329851126|ref|ZP_08265883.1| cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Asticcacaulis biprosthecum C19]
 gi|328839972|gb|EGF89544.1| cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Asticcacaulis biprosthecum C19]
          Length = 154

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 43/117 (36%), Gaps = 19/117 (16%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAY----GGCPHAE 56
           + S D   M AAL  +       S    +  LI       V+     +       C HAE
Sbjct: 1   MQSEDETLMLAALDLAHEAA--RSGEVPIGALIFDPSSKTVVATARNSPILLNDPCAHAE 58

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           + AL  AG+        G   YVTLEPC+       CA  I    I RV+    DP 
Sbjct: 59  ILALRAAGQAIGNYRLGGLWLYVTLEPCAM------CAGAISHARIARVIYGAPDPK 109


>gi|189462876|ref|ZP_03011661.1| hypothetical protein BACCOP_03576 [Bacteroides coprocola DSM 17136]
 gi|189430492|gb|EDU99476.1| hypothetical protein BACCOP_03576 [Bacteroides coprocola DSM 17136]
          Length = 161

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 37/111 (33%), Gaps = 17/111 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
              M  A+  S  +V           +I K+G +I  GV           HAEV A+  A
Sbjct: 10  EELMRKAIELSVQNVAEGGG--PFGAVIAKNGEIIAMGVNRVTPDCDPTAHAEVSAIRTA 67

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
            +     +  G   Y + EPC      P C   I    + R+       D 
Sbjct: 68  AKILGTFDLSGCEIYTSCEPC------PMCLGAIYWAHLDRMYYGNSKNDA 112


>gi|260912280|ref|ZP_05918831.1| cytidine/deoxycytidylate deaminase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260633581|gb|EEX51720.1| cytidine/deoxycytidylate deaminase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 144

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 55/151 (36%), Gaps = 38/151 (25%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
             +  D R++  A  ++     +      V  L+VKD ++I  G     G P        
Sbjct: 6   KQTVLDLRYLRMARIWAENSYCVRRK---VGALVVKDKMIISDGY---NGTPSGFENVCE 59

Query: 54  -----------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                      HAE  A   L  +   + G+T YVT  PC        C++ II+ GI+R
Sbjct: 60  DDNNVTKPYVLHAEANAITKLARSSNNSDGSTLYVTAAPCIE------CSKLIIQSGIKR 113

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           VV             GL  L +  I V  + 
Sbjct: 114 VVYGEKYRL----EEGLDLLRKANIEVIYLN 140


>gi|253743085|gb|EES99615.1| Cytosine deaminase, putative [Giardia intestinalis ATCC 50581]
          Length = 163

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 42/136 (30%), Gaps = 17/136 (12%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTA----YGGCPHAEVQALEEAGE 65
           M      +   +        V C IV   G ++  G  A         HAE+ AL +   
Sbjct: 1   MEECFEEANLALAEREV--PVGCAIVDGSGRILATGRNATNRTRNSMCHAEMVALAQVPL 58

Query: 66  EAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           +A   G   YVT+EPC        CA  +   G+  VV    +      G  L   +   
Sbjct: 59  DADLTGCVLYVTIEPCIM------CAAALSIVGLTNVVYFARNDKFGGCGSVLDVNNH-- 110

Query: 124 IIVDRMMESEGKIFLH 139
           I           +   
Sbjct: 111 IESPWTKLDAKYMPNE 126


>gi|118197658|ref|YP_874051.1| deoxycytidylate deaminase [Thermus phage phiYS40]
 gi|116266349|gb|ABJ91432.1| deoxycytidylate deaminase [Thermus phage phiYS40]
          Length = 142

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 29/146 (19%)

Query: 9   RFMSAALRFSRW-HVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCP------------- 53
           ++    +  ++            V  +IV +   ++  G   +                 
Sbjct: 3   KWHKRFIELAKTIAQYSKDPRTKVGAVIVDNERRIVSMGYNGFPRKVLDLEERLNNRKEK 62

Query: 54  -----HAEVQALEEAGEEARGATAYV-TLEPCSHYGRSPPCAQFIIECGIRRVVV--CVD 105
                HAE+ A+  A  +  G T YV    PC+       CA+ II+ GI++V+    VD
Sbjct: 63  LKYVVHAELNAILNAKRDIEGTTIYVYPYFPCNE------CAKAIIQSGIKKVITTGIVD 116

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMME 131
           D             ++ GIIV+   E
Sbjct: 117 DNWKESVEASKNMFNEAGIIVEIFQE 142


>gi|222151486|ref|YP_002560642.1| late competence operon required for DNA binding and uptake ComEB
           [Macrococcus caseolyticus JCSC5402]
 gi|222120611|dbj|BAH17946.1| late competence operon required for DNA binding and uptake ComEB
           [Macrococcus caseolyticus JCSC5402]
          Length = 153

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 46/133 (34%), Gaps = 31/133 (23%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53
             FM+ +   +      T T  SV   IVK+  +I  G                      
Sbjct: 8   EYFMAQSQLLALRS---TCTRLSVGATIVKNNRIIAGGYNGSVSGEVHCIDAGCYVEGGH 64

Query: 54  -----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE+ AL +    G    GA  YVT  PC H      C + +I+ GI+++    D
Sbjct: 65  CIRTIHAEMNALLQCAKMGVTTEGADIYVTHFPCIH------CTKSLIQAGIKKIYYAED 118

Query: 106 DPDVRVSGRGLQW 118
             +   +   L  
Sbjct: 119 YKNHPYAIELLDK 131


>gi|297201565|ref|ZP_06918962.1| cytidine/deoxycytidine deaminase [Streptomyces sviceus ATCC 29083]
 gi|197711065|gb|EDY55099.1| cytidine/deoxycytidine deaminase [Streptomyces sviceus ATCC 29083]
          Length = 152

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 19/149 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY--GGCP--HAEVQALEE 62
            R+++ A+  +R   GL      +   +   DG ++GRG       G P  HAE  A   
Sbjct: 10  HRWLATAVEEAR--AGLAEGGIPIGAALYGADGTLLGRGHNRRVQDGDPSLHAETAAFRA 67

Query: 63  AGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           AG +   RG T   TL PC +      C+  + + GI RVVV     +      G  WL+
Sbjct: 68  AGRQRSYRGTTMVTTLSPCWY------CSGLVRQFGIGRVVVG----EATTFHGGHDWLA 117

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           + G+ +  + + E    +  ++ +  E  
Sbjct: 118 EHGVEIVLVDDPECVRMMTDFIGKNPELW 146


>gi|94676768|ref|YP_588482.1| cytidine/deoxycytidylate deaminase family protein [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|94219918|gb|ABF14077.1| cytidine/deoxycytidylate deaminase family protein [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 158

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 49/134 (36%), Gaps = 20/134 (14%)

Query: 30  SVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  ++V +G  IG G    +  +    HAE+ AL + G+        GA  YVTLEPC 
Sbjct: 18  PVGAILVLEGKKIGEGLNSSIHYHDPTAHAEILALRQGGKTIGNYRITGAVMYVTLEPCL 77

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGK 135
                  C   +I   I R+               L  LS   I     +   ++     
Sbjct: 78  M------CIGAMIHARISRIAFGAKAVKNNEMSLCLSVLSSTQINHNITLCPNILAEACS 131

Query: 136 IFLHAYLTRQVEKR 149
           + L  +  R+  ++
Sbjct: 132 LQLSTFFKRKRNQQ 145


>gi|313606255|gb|EFR83242.1| tRNA-specific adenosine deaminase [Listeria monocytogenes FSL
           F2-208]
          Length = 116

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 16/107 (14%)

Query: 47  TAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           T+     HAE+ A+++A +        GA  YVTLEPC      P C+  I+   I +V 
Sbjct: 5   TSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPC------PMCSGAILLSRIEKVY 58

Query: 102 VCVDDPDVRVSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLT 143
               DP    +G  +  L          +   +ME E    L ++  
Sbjct: 59  YGAKDPKAGTAGSLMNLLQDDRFNHTCEVEAGLMEKESSEMLKSFFQ 105


>gi|320105272|ref|YP_004180862.1| bifunctional deaminase-reductase domain-containing protein
           [Terriglobus saanensis SP1PR4]
 gi|319923793|gb|ADV80868.1| bifunctional deaminase-reductase domain protein [Terriglobus
           saanensis SP1PR4]
          Length = 187

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 11/119 (9%)

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
              P I+VT    P    +        +     DLKKL++ ++     ++ + GGA +  
Sbjct: 74  GDTPTIVVTHRKLPSTRKS--------VEFYSGDLKKLVSEILAPRYKNIWLVGGAILCQ 125

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIGKN 358
           SF+   LVD I    + +++G+G       +  +E+ +       + ++ V L Y  ++
Sbjct: 126 SFLRLGLVDEIRWMIAPVILGDG--LHLFGDSGMEQKWQLKNVVAYKNNFVKLSYRRQS 182


>gi|306829176|ref|ZP_07462366.1| cytidine and deoxycytidylate deaminase [Streptococcus mitis ATCC
           6249]
 gi|304428262|gb|EFM31352.1| cytidine and deoxycytidylate deaminase [Streptococcus mitis ATCC
           6249]
          Length = 155

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 54/156 (34%), Gaps = 33/156 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           ++D  F + AL  +      T     V  ++VKD  VI  G                   
Sbjct: 7   AWDEYFAAQALLIANRS---TCKRAKVGAVLVKDNKVISTGYNGSVSGTEHCIDHECLVI 63

Query: 54  --------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                   HAEV A+ +  E    RG TAYVT  PC +      C + +++ G +RVV  
Sbjct: 64  EGHCVRTLHAEVNAILQGAERGVPRGFTAYVTHFPCLN------CTKQLLQVGCKRVVYI 117

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
                 R+          KG  +  +     +  L 
Sbjct: 118 NQY---RMDDYAQYLYQDKGTELTHLPLETVQAALQ 150


>gi|77919044|ref|YP_356859.1| deoxycytidylate deaminase [Pelobacter carbinolicus DSM 2380]
 gi|77545127|gb|ABA88689.1| deoxycytidylate deaminase [Pelobacter carbinolicus DSM 2380]
          Length = 158

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 54/160 (33%), Gaps = 43/160 (26%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
           M   S++  FM  A   +R    L      V  ++VKD  ++  G               
Sbjct: 1   MERPSWEEYFMEIARLVARRSTCLRR---QVGAVLVKDKNILATGYNGTPSGLRHCSEVG 57

Query: 47  -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE  A+ +A   G    GA  + T  PC        C++
Sbjct: 58  CLRQLQNVPSGERHELCRGLHAEQNAIIQAAKHGTNISGAILFCTNTPCVI------CSK 111

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
            II  GIR+VV     PD       L  L++ G+ V  + 
Sbjct: 112 MIINAGIRQVVYLDGYPD----HLSLDMLAESGVTVSALN 147


>gi|325095421|gb|EGC48731.1| deoxycytidylate deaminase [Ajellomyces capsulatus H88]
          Length = 356

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 47/148 (31%), Gaps = 41/148 (27%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP--- 53
           +D  FM  A   +            V C++V+   V+  G             GGCP   
Sbjct: 186 WDQYFMQLA-SLAAQRSNCMKR--RVGCVLVRGRRVMSTGYNGTPRNTKNCNEGGCPRCN 242

Query: 54  ---------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                          HAE  AL EAG E    GAT Y    PC        C+  I + G
Sbjct: 243 CGEGGGAALSTCLCIHAEENALLEAGRERIGEGATLYCNTCPCL------TCSVKIAQLG 296

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           I  VV         +       L + G+
Sbjct: 297 ISEVVYSQSY---NMDNETASILKEAGV 321


>gi|302390580|ref|YP_003826401.1| CMP/dCMP deaminase zinc-binding protein [Thermosediminibacter
           oceani DSM 16646]
 gi|302201208|gb|ADL08778.1| CMP/dCMP deaminase zinc-binding protein [Thermosediminibacter
           oceani DSM 16646]
          Length = 152

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 60/154 (38%), Gaps = 43/154 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D  FM  A   ++    L     SV  ++V +  ++  G                   
Sbjct: 8   SWDDYFMEIAGVVAKRSTCLRR---SVGAVVVLEKRILTTGYNGAPTGLSHCGDVGCLRE 64

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G   +GAT YVT +PC+       CA+ +I 
Sbjct: 65  KLRIPPGERHELCRGLHAEQNAIIQAAIWGTSIKGATIYVTHQPCA------LCAKMLIN 118

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
            GIRR+V   + PD       L+ LS+ G+ + R
Sbjct: 119 AGIRRIVFKGEYPD----NLALELLSEAGVEICR 148


>gi|241667466|ref|ZP_04755044.1| zinc-binding protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254876013|ref|ZP_05248723.1| zinc-binding domain-containing protein [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254842034|gb|EET20448.1| zinc-binding domain-containing protein [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 153

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 52/151 (34%), Gaps = 23/151 (15%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
            D  FM  A   +          P +  ++VKD  ++ +             HAE+  L 
Sbjct: 7   DDIFFMQKAYEQALLA-YKAGEVP-IGAVLVKDNQIVVQDFNKTIMLNDPTAHAEILVLR 64

Query: 62  EAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           +A +E           YVTLEPC        C   +I+  +  ++   DD  V +  R  
Sbjct: 65  QAAKELENYRLVNTKLYVTLEPCIM------CLGGLIQARVSELIYACDDTRVGIFSRE- 117

Query: 117 QWLSQKGI-----IVDRMMESEGKIFLHAYL 142
           +    K I     +   +M  E    L  + 
Sbjct: 118 KLHRNKNINHNLKVTSGVMTEECSKLLRDFF 148


>gi|256851752|ref|ZP_05557140.1| CMP/dCMP deaminase zinc-binding [Lactobacillus jensenii 27-2-CHN]
 gi|260661531|ref|ZP_05862443.1| CMP/dCMP deaminase zinc-binding [Lactobacillus jensenii 115-3-CHN]
 gi|282933582|ref|ZP_06338952.1| tRNA-specific adenosine deaminase [Lactobacillus jensenii 208-1]
 gi|297205374|ref|ZP_06922770.1| CMP/dCMP deaminase zinc-binding [Lactobacillus jensenii JV-V16]
 gi|256615710|gb|EEU20899.1| CMP/dCMP deaminase zinc-binding [Lactobacillus jensenii 27-2-CHN]
 gi|260547588|gb|EEX23566.1| CMP/dCMP deaminase zinc-binding [Lactobacillus jensenii 115-3-CHN]
 gi|281302325|gb|EFA94557.1| tRNA-specific adenosine deaminase [Lactobacillus jensenii 208-1]
 gi|297149952|gb|EFH30249.1| CMP/dCMP deaminase zinc-binding [Lactobacillus jensenii JV-V16]
          Length = 150

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 50/154 (32%), Gaps = 26/154 (16%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
           D +FM  A+  S+  V     N     ++VKD  V+        TA     HAE   +  
Sbjct: 3   DEKFMQEAIELSKKAV--EHGNEPFGAVLVKDNEVVFTNENQIFTANDPTFHAETGLIRR 60

Query: 63  -----AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD--------- 108
                   +    T Y + EPC        C+  ++   + R+V    + D         
Sbjct: 61  FCTSTGITDLSEYTLYTSCEPCFM------CSGAMVWSKLGRMVYAASNDDLEMTMGKHG 114

Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
              S    +  +    +   ++  E    L AY 
Sbjct: 115 SNCSKIVFENYNNAPTVTSGVLREESVAVLKAYF 148


>gi|255542370|ref|XP_002512248.1| Guanine deaminase, putative [Ricinus communis]
 gi|223548209|gb|EEF49700.1| Guanine deaminase, putative [Ricinus communis]
          Length = 211

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 16/116 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
           V + D +F++ A+  +   V      P    ++V++  ++               HAEV 
Sbjct: 52  VQNRDHKFLTRAVEEAYKGVECGDGGP-FGAVVVRNDEIVVSCHNMVLKHTDPTAHAEVT 110

Query: 59  ALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           A+ EA ++           Y + EPC      P C   I    I+R+V        
Sbjct: 111 AVREACKKLDRIELSDCEIYASCEPC------PMCFGAIHLSRIKRLVYGAKAEAA 160


>gi|187935669|ref|YP_001884839.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           botulinum B str. Eklund 17B]
 gi|187723822|gb|ACD25043.1| guanine deaminase [Clostridium botulinum B str. Eklund 17B]
          Length = 157

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 44/156 (28%), Gaps = 20/156 (12%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEE 66
           M   +   +  +      P     IVKDG +I       ++      H EV A+ +A  +
Sbjct: 7   MDLCVEKCKEGMLNLDGGP-FGAAIVKDGEIIALANNTVISTNDPTAHGEVNAIRQACSK 65

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR----VSGRGLQ 117
                  G   Y T EPC      P C   II   I +V       D           L 
Sbjct: 66  LSTFDLTGCELYTTSEPC------PMCMSAIIWANISKVYYGCTVKDAADIGFRDEHILN 119

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHIT 153
           +L         +   +          +      + T
Sbjct: 120 FLKGDCTNKKVLDLEQIDKSNCMTAFKMWINNQNKT 155


>gi|239627103|ref|ZP_04670134.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239517249|gb|EEQ57115.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Clostridiales
           bacterium 1_7_47FAA]
          Length = 195

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 12/155 (7%)

Query: 216 EHSPMRII-LDPHFKLSLDSKIIK--TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC 272
           E +PM  + +DP  +L  +   +         + ++T           RK  I+ I    
Sbjct: 35  EKAPMYYVSIDPSGRLGWEKNSLAYIDTTAHVLEVLTGQASNAYKAFLRKLGISYIIAGK 94

Query: 273 RDL---KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
             L   + L+ +    G+ +L++ GG  +  SFI + + D I +  +    G     +  
Sbjct: 95  ETLDYDEALMKLKHLFGIETLMLGGGGVLNWSFIQAGMCDEISVVIAPCADGSTKTQTLF 154

Query: 330 E-----EGYLEKNFMCVRRDYF-GSDVCLEYIGKN 358
           +            F     D   G  V L Y+ K+
Sbjct: 155 QTKEGLSTDEPVGFTLKSADVLTGDAVWLRYLVKS 189


>gi|210614123|ref|ZP_03290059.1| hypothetical protein CLONEX_02272 [Clostridium nexile DSM 1787]
 gi|210150824|gb|EEA81832.1| hypothetical protein CLONEX_02272 [Clostridium nexile DSM 1787]
          Length = 162

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 54/152 (35%), Gaps = 35/152 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV-------------TAYG 50
           S+D  FM  A+      +     +  V C IV +D  ++  G                  
Sbjct: 10  SWDEYFMGVAM---LSGMRSKDPSTQVGCCIVSQDNKILSMGYNGFPIGCSDDEFPWERE 66

Query: 51  G----------CPHAEVQALEE-AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
           G            H+E+ A+   +G    GA  YV+L PC+       CA+ II+ GIR 
Sbjct: 67  GDDPLETKYLYSTHSELNAILNYSGGSLAGAKLYVSLFPCNE------CAKAIIQSGIRE 120

Query: 100 VVVCVDDP-DVRVSGRGLQWLSQKGIIVDRMM 130
           V+   D   D        + +   G+   +  
Sbjct: 121 VIYDCDKYADTPSVIASKRMMDAAGVRYYQYH 152


>gi|23099435|ref|NP_692901.1| late competence protein [Oceanobacillus iheyensis HTE831]
 gi|22777664|dbj|BAC13936.1| late competence protein (DNA binding and uptake) [Oceanobacillus
           iheyensis HTE831]
          Length = 186

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 53/155 (34%), Gaps = 34/155 (21%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA------------ 48
           M   S+D  FM+ +   S            V   IV+D  +I  G               
Sbjct: 1   MERISWDQYFMAQSHLLSLRSTCTRLE---VGATIVRDKRIIAGGYNGSVTGSVHCTDEG 57

Query: 49  ---YGG----CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                G      HAE  AL +    G    GA  YVT  PC        C + +I+ GIR
Sbjct: 58  CYVIDGHCVRTVHAEANALLQCAKFGVPTEGADVYVTHFPCLQ------CTKQLIQSGIR 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
            V    D  +   +   ++  ++ G+   ++   +
Sbjct: 112 TVYYAEDYHNHPYA---MELFTEAGVKTVKVPLHQ 143


>gi|163867550|ref|YP_001608749.1| cytosine/adenosine deaminase [Bartonella tribocorum CIP 105476]
 gi|161017196|emb|CAK00754.1| Cytosine/adenosine deaminase [Bartonella tribocorum CIP 105476]
          Length = 148

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 45/117 (38%), Gaps = 22/117 (18%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M ++      M  AL  ++W          V  +I +   +I R      TAY    HAE
Sbjct: 1   MTLTP-----MEIALLEAQWAA--KKDEVPVGAVITRGKTIIARAGNFIKTAYDPTGHAE 53

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           ++ +  A      E       YVTLEPC+       CA  I    IRR+    +DP 
Sbjct: 54  IRVIRMACETLQSERLPDCDLYVTLEPCAM------CAAAISFARIRRLYYATNDPK 104


>gi|220927719|ref|YP_002504628.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulolyticum H10]
 gi|219998047|gb|ACL74648.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulolyticum H10]
          Length = 145

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 55/155 (35%), Gaps = 43/155 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D  FM   +   +     T     +  +IVK+  ++  G                   
Sbjct: 4   SWDEYFMQI-VELIK--TRSTCLRRQIGAVIVKEKRILASGYNGAPVGCKHCSEVGCLRE 60

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G    GAT YVT +PC        CA+  I 
Sbjct: 61  KLNIPSGQRHELCRAIHAEQNAIVQAAYSGTSVSGATLYVTNQPC------VLCAKLAIN 114

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            GI R+V   D PD       +  LS+ GI V R+
Sbjct: 115 AGIVRIVFNGDYPD----ELSMTLLSEAGIEVVRL 145


>gi|319651626|ref|ZP_08005753.1| ComEB protein [Bacillus sp. 2_A_57_CT2]
 gi|317396693|gb|EFV77404.1| ComEB protein [Bacillus sp. 2_A_57_CT2]
          Length = 187

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 34/154 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------ 53
           M   S++  FM+ +   +      T T  +V   IV+D  +I  G      G        
Sbjct: 1   MDRISWNQYFMAQSHLLALRS---TCTRLAVGATIVRDKRIIAGGYNGSIAGGEHCIDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A+ +    G     A  YVT  PC        C + II+ GI+
Sbjct: 58  CYVIDNHCVRTIHAEMNAILQCAKFGVPTTDAEIYVTHFPCLQ------CCKAIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
            V    D  +       ++   + G+   +++  
Sbjct: 112 TVYYAQDYKNHPYG---IELFEKAGVKTVQVIAE 142


>gi|293556480|ref|ZP_06675054.1| riboflavin biosynthesis protein RibD C- domain protein
           [Enterococcus faecium E1039]
 gi|291601359|gb|EFF31637.1| riboflavin biosynthesis protein RibD C- domain protein
           [Enterococcus faecium E1039]
          Length = 173

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVE 293
           KT   A   + TE   P         +  +   D      D    L  L       + V 
Sbjct: 52  KTYQEAKKYLETEAIYPEKKNFVFSTHAQLQLPDAEVVNEDPVAFLKNLQMTEGKDIWVV 111

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           GG  +    +  +++D   +  + +++G+ GIP   ++G  E  F  +    FG  + L 
Sbjct: 112 GGGRLIKPLLEHQMIDEWYIQITPVLLGD-GIP-LFQKGIYEARFEMLDTTRFGEFIELH 169

Query: 354 YIGK 357
           Y+ K
Sbjct: 170 YVRK 173


>gi|239623208|ref|ZP_04666239.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522174|gb|EEQ62040.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 164

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 53/152 (34%), Gaps = 37/152 (24%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT---------------- 47
           ++D  FM  AL   R        +  V   IV +D  ++  G                  
Sbjct: 10  TWDEYFMGVALLSGRRSK---DPSTQVGACIVSQDNKILSMGYNGFPKGCSDDEFPWGKE 66

Query: 48  ---------AYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                     Y    H+E+ A+    G    G+  YVTL PC+       CA+ II+ GI
Sbjct: 67  KQEEDPYNSKYFYSTHSELNAILNYRGGSLEGSKLYVTLFPCNE------CAKAIIQAGI 120

Query: 98  RRVVVCVDDP-DVRVSGRGLQWLSQKGIIVDR 128
           + ++   D   +        + L+  G+   +
Sbjct: 121 KTIIYGEDKYAETPAVRASKRMLNAAGVRYYQ 152


>gi|148228295|ref|NP_001089483.1| tRNA-specific adenosine deaminase 2 [Xenopus laevis]
 gi|82225873|sp|Q4V7V8|ADAT2_XENLA RecName: Full=tRNA-specific adenosine deaminase 2; AltName:
           Full=Deaminase domain-containing protein 1; AltName:
           Full=tRNA-specific adenosine-34 deaminase subunit ADAT2
 gi|66912051|gb|AAH97698.1| MGC115242 protein [Xenopus laevis]
          Length = 175

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 23/123 (18%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
           +M  A + ++  +   +    V CL+V    V+G+G            HAE+ A+++  +
Sbjct: 13  WMHKAFQMAQDALN--NGEVPVGCLMVYGNQVVGKGRNEVNETKNATQHAEMVAIDQVLD 70

Query: 66  ----EARGAT-------AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
                ++ +T        YVT+EPC        CA  +    I  VV    +      G 
Sbjct: 71  WCEMNSKKSTDVFENIVLYVTVEPCIM------CAGALRLLKIPLVVYGCRNERFGGCGS 124

Query: 115 GLQ 117
            L 
Sbjct: 125 VLN 127


>gi|327439586|dbj|BAK15951.1| deoxycytidylate deaminase [Solibacillus silvestris StLB046]
          Length = 191

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 65/192 (33%), Gaps = 35/192 (18%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
           M   ++D  FM+ +   +      T +  +V   IV++  +I  G               
Sbjct: 1   MERITWDQFFMAQSHLLALRS---TCSRLAVGATIVREKRIIAGGYNGSISGDEHCIEEG 57

Query: 47  -----TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE  AL +    G  A GA  YVT  PC       PC + II+ GI+
Sbjct: 58  CYVVDNHCVRTVHAETNALLQCAKYGTPANGADLYVTHFPCL------PCTKTIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
            V    D  +   +   ++   +  + +     +     FL         +      ++ 
Sbjct: 112 NVYYAKDYKNNNYA---MELFKKANVHVAHIPFDEAKIDFLQDEKFALTAEMLEKLRELG 168

Query: 158 VSQDNMIGMAGC 169
            S+D ++ +   
Sbjct: 169 ASRDQLLPLEEK 180


>gi|47207020|emb|CAF91477.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 161

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 54/162 (33%), Gaps = 30/162 (18%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE---- 62
           M  A   ++    L +    V CL+V +  V+GRG            HAE+ AL+E    
Sbjct: 1   MDEAFDMAKDA--LQNGEVPVGCLMVYNNEVVGRGRNEVNETKNATRHAEMVALDELLNW 58

Query: 63  -------AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
                    + +R    YVT+EPC        CA  +    I  VV    +      G  
Sbjct: 59  CHHSNLDVSKVSRKTVLYVTVEPC------VMCAAALRLLNIALVVYGCRNERFGGCGSV 112

Query: 116 LQW----LSQKGIIVDRM---MESEGKIFLHAYLTRQVEKRS 150
           L      L+Q G     +      E    L  +  ++     
Sbjct: 113 LDVSGADLAQTGSTFKCVSGHRADEAVEMLKTFYKQENPNAP 154


>gi|325294911|ref|YP_004281425.1| CMP/dCMP deaminase zinc-binding protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065359|gb|ADY73366.1| CMP/dCMP deaminase zinc-binding protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 151

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 47/138 (34%), Gaps = 39/138 (28%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
           MP  S+D  FMS A   S      T     V  ++VKD  +I  G               
Sbjct: 1   MPRPSWDEYFMSIAEMVSTRS---TCIRRKVGAVLVKDKRIIATGYNGPPSGLKHPEEVG 57

Query: 47  -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE  A+ +A   G   +G+  Y T  PCS       C +
Sbjct: 58  CLREKLNIPSGERHELCRGLHAEQNAIIQAALHGVFTKGSILYCTHCPCS------LCTK 111

Query: 91  FIIECGIRRVVVCVDDPD 108
            +I  G+ +V+     PD
Sbjct: 112 MLINAGVVKVIYKEGYPD 129


>gi|225557684|gb|EEH05969.1| deoxycytidylate deaminase [Ajellomyces capsulatus G186AR]
          Length = 356

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 47/148 (31%), Gaps = 41/148 (27%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP--- 53
           +D  FM  A   +            V C++V+   V+  G             GGCP   
Sbjct: 186 WDQYFMQLA-SLAAQRSNCMKR--RVGCVLVRGRRVMSTGYNGTPRNTKNCNEGGCPRCN 242

Query: 54  ---------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                          HAE  AL EAG E    GAT Y    PC        C+  I + G
Sbjct: 243 CGEGGGAALSTCLCIHAEENALLEAGRERIGEGATLYCNTCPCL------TCSVKIAQLG 296

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           I  VV         +       L + G+
Sbjct: 297 ISEVVYSQSY---NMDNETASILKEAGV 321


>gi|148555238|ref|YP_001262820.1| tRNA-adenosine deaminase [Sphingomonas wittichii RW1]
 gi|148500428|gb|ABQ68682.1| tRNA-adenosine deaminase [Sphingomonas wittichii RW1]
          Length = 150

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAG-----EEARGATAYVTLEPCS 80
            V  +IV+   V+     A  G      HAE++A+  A      +       YVTLEPC+
Sbjct: 26  PVGAVIVRGDEVVAAAANAMCGGTDPTAHAEIEAIRAASARLGAQRLDDCDLYVTLEPCA 85

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                  CA  I    +RR+    DDP 
Sbjct: 86  M------CAGAIAHARLRRLYYGADDPK 107


>gi|46907711|ref|YP_014100.1| zinc-binding protein ComEB [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|226224084|ref|YP_002758191.1| ComEB protein [Listeria monocytogenes Clip81459]
 gi|254824458|ref|ZP_05229459.1| zinc-binding ComEB family protein [Listeria monocytogenes FSL
           J1-194]
 gi|254852107|ref|ZP_05241455.1| zinc-binding ComEB family protein [Listeria monocytogenes FSL
           R2-503]
 gi|254931418|ref|ZP_05264777.1| zinc-binding ComEB family protein [Listeria monocytogenes HPB2262]
 gi|254992215|ref|ZP_05274405.1| ComEB protein [Listeria monocytogenes FSL J2-064]
 gi|255520859|ref|ZP_05388096.1| ComEB protein [Listeria monocytogenes FSL J1-175]
 gi|300764852|ref|ZP_07074842.1| hypothetical protein LMHG_12881 [Listeria monocytogenes FSL N1-017]
 gi|46880980|gb|AAT04277.1| zinc-binding, ComEB family protein [Listeria monocytogenes serotype
           4b str. F2365]
 gi|225876546|emb|CAS05255.1| Putative ComEB protein [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|258605409|gb|EEW18017.1| zinc-binding ComEB family protein [Listeria monocytogenes FSL
           R2-503]
 gi|293582968|gb|EFF95000.1| zinc-binding ComEB family protein [Listeria monocytogenes HPB2262]
 gi|293593695|gb|EFG01456.1| zinc-binding ComEB family protein [Listeria monocytogenes FSL
           J1-194]
 gi|300514528|gb|EFK41585.1| hypothetical protein LMHG_12881 [Listeria monocytogenes FSL N1-017]
 gi|328465524|gb|EGF36753.1| ComEB protein [Listeria monocytogenes 1816]
 gi|328474941|gb|EGF45737.1| ComEB protein [Listeria monocytogenes 220]
 gi|332311925|gb|EGJ25020.1| ComE operon protein [Listeria monocytogenes str. Scott A]
          Length = 186

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 40/173 (23%)

Query: 1   MPVSSFDARFMSAALRFSRWHV---GLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP--- 53
           M   ++D  FM      ++ H+     T T   V   IV+D  +I  G      G     
Sbjct: 1   MQRIAWDQFFM------AQSHLISSRSTCTRLMVGATIVRDKRIIAGGYNGSIAGGDHCA 54

Query: 54  ---------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                          HAE+ A+ +    G     A  YVT  PC        C + II+ 
Sbjct: 55  EHGCYVVDGHCIRTIHAEMNAILQCAKFGATTDKAELYVTHFPCL------ACTKSIIQA 108

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
           GI++V    D  +   +   L+  +  G+ + ++   E  + ++ +   ++  
Sbjct: 109 GIKKVYFAKDYKNHPYA---LELFNIAGVELQKVEFDESVLQVNNWNGEKMHT 158


>gi|16803523|ref|NP_465008.1| hypothetical protein lmo1483 [Listeria monocytogenes EGD-e]
 gi|47095436|ref|ZP_00233046.1| comE operon protein 2 [Listeria monocytogenes str. 1/2a F6854]
 gi|254827771|ref|ZP_05232458.1| comEB [Listeria monocytogenes FSL N3-165]
 gi|254829758|ref|ZP_05234413.1| hypothetical protein Lmon1_00315 [Listeria monocytogenes 10403S]
 gi|254898351|ref|ZP_05258275.1| hypothetical protein LmonJ_01010 [Listeria monocytogenes J0161]
 gi|254912157|ref|ZP_05262169.1| comE operon protein 2 [Listeria monocytogenes J2818]
 gi|254936485|ref|ZP_05268182.1| comEB [Listeria monocytogenes F6900]
 gi|290893844|ref|ZP_06556822.1| comEB [Listeria monocytogenes FSL J2-071]
 gi|16410912|emb|CAC99561.1| comEB [Listeria monocytogenes EGD-e]
 gi|47016257|gb|EAL07180.1| comE operon protein 2 [Listeria monocytogenes str. 1/2a F6854]
 gi|258600151|gb|EEW13476.1| comEB [Listeria monocytogenes FSL N3-165]
 gi|258609078|gb|EEW21686.1| comEB [Listeria monocytogenes F6900]
 gi|290556561|gb|EFD90097.1| comEB [Listeria monocytogenes FSL J2-071]
 gi|293590129|gb|EFF98463.1| comE operon protein 2 [Listeria monocytogenes J2818]
          Length = 186

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 40/173 (23%)

Query: 1   MPVSSFDARFMSAALRFSRWHV---GLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP--- 53
           M   ++D  FM      ++ H+     T T   V   IV+D  +I  G      G     
Sbjct: 1   MQRIAWDQFFM------AQSHLISSRSTCTRLMVGATIVRDKRIIAGGYNGSIAGGDHCA 54

Query: 54  ---------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                          HAE+ A+ +    G     A  YVT  PC        C + II+ 
Sbjct: 55  EHGCYVVDGHCIRTIHAEMNAILQCAKFGATTDKAELYVTHFPCL------ACTKSIIQA 108

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
           GI++V    D  +   +   L+  +  G+ + ++   E  + ++ +   ++  
Sbjct: 109 GIKKVYFAKDYKNHPYA---LELFNIAGVELQKVEFDESVLQVNNWNGEKMHT 158


>gi|308177840|ref|YP_003917246.1| nucleoside deaminase-like protein [Arthrobacter arilaitensis Re117]
 gi|307745303|emb|CBT76275.1| nucleoside deaminase-like protein [Arthrobacter arilaitensis Re117]
          Length = 156

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 16/113 (14%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALE 61
           FD + M AA+  S   +    + P    ++V +G VI     +  G      HAE+ A+ 
Sbjct: 2   FDPQLMQAAIDQSLLALEADDSGP-FGAVVVLEGKVISAACNSVVGSMDPTAHAEINAIR 60

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
            AG+     +      Y + EPC      P C   I     + V    +  + 
Sbjct: 61  AAGQVLGSFDLSECELYTSCEPC------PMCLGAIYWSRFKHVYFANNREEA 107


>gi|315503317|ref|YP_004082204.1| cmp/dcmp deaminase zinc-binding protein [Micromonospora sp. L5]
 gi|315409936|gb|ADU08053.1| CMP/dCMP deaminase zinc-binding protein [Micromonospora sp. L5]
          Length = 208

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 49/153 (32%), Gaps = 24/153 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTN---PSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQA 59
             +M  AL  +       + +     V  ++   DG  +  G            HAEV A
Sbjct: 61  ELWMRRALEVAVTGPDDATPDADDVPVGAVLYGPDGAELAIGRNERELTGDPTAHAEVLA 120

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           L  A +          T  VTLEPC        CA  I    +  VV    +P     G 
Sbjct: 121 LRRAAQRLGRWRLDDCTLVVTLEPC------TMCAGAIALARVSTVVFGAWEPKTGAVGS 174

Query: 115 GLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
               L  + +     +   ++E E    L A+ 
Sbjct: 175 LWDVLRDRRVTHRPEVYGGVLERESATLLRAFF 207


>gi|227893607|ref|ZP_04011412.1| deaminase-reductase domain protein [Lactobacillus ultunensis DSM
           16047]
 gi|227864467|gb|EEJ71888.1| deaminase-reductase domain protein [Lactobacillus ultunensis DSM
           16047]
          Length = 190

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 11/112 (9%)

Query: 222 IILDPHFKLSLDSKIIKTALLA---PVIIVTENDDPVLALAFRKKNINIIYC--DCRDLK 276
           I+ D   ++     I +T   +    +I+ +EN           +NI+ I    +  DLK
Sbjct: 84  IVTDSKGRM-----IWETETSSVFPHLILTSENVSKEYIDYLNSRNISWIAAGKEHVDLK 138

Query: 277 KLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           K + IL     V  L V GG  +   F+ + LVD I +     V G  G P+
Sbjct: 139 KAMEILNKEFRVDRLAVVGGGRINGGFLKAGLVDEISILVGPGVDGRTGQPA 190


>gi|32475570|ref|NP_868564.1| cytosine deaminase [Rhodopirellula baltica SH 1]
 gi|32446112|emb|CAD75941.1| cytosine deaminase [Rhodopirellula baltica SH 1]
          Length = 187

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 55/148 (37%), Gaps = 20/148 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAGE 65
           F+ AAL  +R  +        +  ++V D  ++ RG       G    HAE+  LE AG 
Sbjct: 42  FLQAALNEARLGLNEHG--IPIGSVLVIDNEIVSRGHNRRIQNGSSILHAEMDCLERAGR 99

Query: 66  EARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                   +T Y TL PC        C+   +   I R++V  +            ++  
Sbjct: 100 LTANDYSRSTLYSTLSPCDM------CSGAALLYKIPRIIVGENQTFQGPES----YVRS 149

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           +G+ +  + + +    + A++       
Sbjct: 150 RGVDLQIVNDPDCIELMRAFIQNNPTLW 177


>gi|293567272|ref|ZP_06678626.1| dihydrofolate reductase family protein [Enterococcus faecium E1071]
 gi|294615588|ref|ZP_06695444.1| dihydrofolate reductase family protein [Enterococcus faecium E1636]
 gi|291590021|gb|EFF21815.1| dihydrofolate reductase family protein [Enterococcus faecium E1071]
 gi|291591531|gb|EFF23184.1| dihydrofolate reductase family protein [Enterococcus faecium E1636]
          Length = 190

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVE 293
           KT   A   + TE   P         +  +   D      D    L  L       + V 
Sbjct: 69  KTYQEAKKYLETEAIYPEKKNFVFSTHAQLQLPDAEVVNEDPVAFLKNLQMTEGKDIWVV 128

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           GG  +    +  +++D   +  + +++G+ GIP   ++G  E  F  +    FG  + L 
Sbjct: 129 GGGRLIKPLLEHQMIDEWYIQITPVLLGD-GIP-LFQKGTYEARFEMLDTTRFGEFIELH 186

Query: 354 YIGK 357
           Y+ K
Sbjct: 187 YVRK 190


>gi|257878618|ref|ZP_05658271.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257883122|ref|ZP_05662775.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257891869|ref|ZP_05671522.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257894439|ref|ZP_05674092.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|258616857|ref|ZP_05714627.1| YwjB [Enterococcus faecium DO]
 gi|260559331|ref|ZP_05831513.1| predicted protein [Enterococcus faecium C68]
 gi|261208007|ref|ZP_05922685.1| predicted protein [Enterococcus faecium TC 6]
 gi|289566897|ref|ZP_06447304.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Enterococcus faecium D344SRF]
 gi|293563839|ref|ZP_06678272.1| riboflavin biosynthesis protein RibD C- domain protein
           [Enterococcus faecium E1162]
 gi|294619812|ref|ZP_06699202.1| riboflavin biosynthesis protein RibD C-domain protein [Enterococcus
           faecium E1679]
 gi|314938078|ref|ZP_07845386.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecium
           TX0133a04]
 gi|314943600|ref|ZP_07850357.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecium
           TX0133C]
 gi|314949237|ref|ZP_07852586.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecium
           TX0082]
 gi|314952613|ref|ZP_07855605.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecium
           TX0133A]
 gi|314992461|ref|ZP_07857883.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecium
           TX0133B]
 gi|314997376|ref|ZP_07862332.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecium
           TX0133a01]
 gi|257812846|gb|EEV41604.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257818780|gb|EEV46108.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257828229|gb|EEV54855.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257830818|gb|EEV57425.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|260074691|gb|EEW63011.1| predicted protein [Enterococcus faecium C68]
 gi|260077765|gb|EEW65478.1| predicted protein [Enterococcus faecium TC 6]
 gi|289161303|gb|EFD09196.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Enterococcus faecium D344SRF]
 gi|291593945|gb|EFF25429.1| riboflavin biosynthesis protein RibD C-domain protein [Enterococcus
           faecium E1679]
 gi|291604209|gb|EFF33710.1| riboflavin biosynthesis protein RibD C- domain protein
           [Enterococcus faecium E1162]
 gi|313588563|gb|EFR67408.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecium
           TX0133a01]
 gi|313593003|gb|EFR71848.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecium
           TX0133B]
 gi|313595281|gb|EFR74126.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecium
           TX0133A]
 gi|313597718|gb|EFR76563.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecium
           TX0133C]
 gi|313642567|gb|EFS07147.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecium
           TX0133a04]
 gi|313644378|gb|EFS08958.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecium
           TX0082]
          Length = 173

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVE 293
           KT   A   + TE   P         +  +   D      D    L  L       + V 
Sbjct: 52  KTYQEAKKYLETEAIYPEKKNFVFSTHAQLQLPDAEVVNEDPVAFLKNLQMTEGKDIWVV 111

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           GG  +    +  +++D   +  + +++G+ GIP   ++G  E  F  +    FG  + L 
Sbjct: 112 GGGRLIKPLLEHQMIDEWYIQITPVLLGD-GIP-LFQKGTYEARFEMLDTTRFGEFIELH 169

Query: 354 YIGK 357
           Y+ K
Sbjct: 170 YVRK 173


>gi|29345731|ref|NP_809234.1| cytidine/deoxycytidylate deaminase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253567719|ref|ZP_04845130.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 1_1_6]
 gi|298384629|ref|ZP_06994189.1| guanine deaminase [Bacteroides sp. 1_1_14]
 gi|29337624|gb|AAO75428.1| cytidine/deoxycytidylate deaminase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251841792|gb|EES69872.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 1_1_6]
 gi|298262908|gb|EFI05772.1| guanine deaminase [Bacteroides sp. 1_1_14]
          Length = 156

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 18/114 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAY----GGCPHAEVQALEE 62
              M  A+  S+ +V           +I  K+G +I  GV           HAEV A+  
Sbjct: 4   EELMRKAIELSKENVANGGG--PFGAVIATKEGEIIATGVNRVTSSCDPTAHAEVSAIRA 61

Query: 63  AGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           A  +       G   Y + EPC      P C   I    + ++    +  D + 
Sbjct: 62  AAAKLGTFNLSGYEIYTSCEPC------PMCLGAIYWARLDKMYYGNNKTDAKN 109


>gi|154496071|ref|ZP_02034767.1| hypothetical protein BACCAP_00355 [Bacteroides capillosus ATCC
           29799]
 gi|150274626|gb|EDN01690.1| hypothetical protein BACCAP_00355 [Bacteroides capillosus ATCC
           29799]
          Length = 256

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 66/172 (38%), Gaps = 23/172 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
             +M  AL  +R  +   +    V C++V +G V+GRG            HAE+ A+ EA
Sbjct: 4   EGYMRQALDLAREAM--EAGEVPVGCVVVWEGRVVGRGRNRREENKDALAHAELMAIHEA 61

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                G     A  YVTLEPC+       CA  I+   I RV    +D      G  L  
Sbjct: 62  NQTLGGWRLHKADLYVTLEPCAM------CAGGIVNARIPRVWYGAEDTRFGACGSALDV 115

Query: 119 ----LSQKGIIVDRMMESEGKIFLHAYLT--RQVEKRSHITLKIAVSQDNMI 164
               L+ +  +   ++  E    +  +    R+  K+        +  D M+
Sbjct: 116 FSAPLNHRPQVTGGILAEESLALMQQFFQRLREKRKKPASPCCGEMKGDMMM 167


>gi|320537565|ref|ZP_08037503.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Treponema phagedenis F0421]
 gi|320145567|gb|EFW37245.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Treponema phagedenis F0421]
          Length = 165

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 51/156 (32%), Gaps = 43/156 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           ++D  FM      ++     T       C+I +D  ++  G                   
Sbjct: 12  TWDEYFMEVCHAIAKRA---TCDRGRSGCVIARDNQILVTGYVGSPTGLPHCDEVGHQLK 68

Query: 47  ---TAYGG-------CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFII 93
                 G          HAE  A+ +A   G    GAT Y  + PC        CA  II
Sbjct: 69  KMQHEDGSITQHCVRTVHAEQNAICQAARRGIAINGATLYCKMTPC------RTCAMLII 122

Query: 94  ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            CGI RVV      D   +   +    Q GI ++ +
Sbjct: 123 NCGIVRVVAEKRYHD---ANDTIALFKQAGIKLEHL 155


>gi|254433467|ref|ZP_05046975.1| hypothetical protein NOC27_398 [Nitrosococcus oceani AFC27]
 gi|207089800|gb|EDZ67071.1| hypothetical protein NOC27_398 [Nitrosococcus oceani AFC27]
          Length = 93

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 10/89 (11%)

Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE- 65
          M+ A+  +   +      P    ++V+DG ++GR             HAEVQA+  A   
Sbjct: 1  MAEAISLASEGMADGLGGP-FGAVVVRDGEILGRACNDVIALRDPTAHAEVQAIRMACRN 59

Query: 66 ----EARGATAYVTLEPCSHYGRSPPCAQ 90
                 G   Y + EPC     +   A+
Sbjct: 60 FNDFHLEGCALYCSCEPCPMCLGAAYWAR 88


>gi|218778060|ref|YP_002429378.1| dCMP deaminase [Desulfatibacillum alkenivorans AK-01]
 gi|218759444|gb|ACL01910.1| dCMP deaminase [Desulfatibacillum alkenivorans AK-01]
          Length = 166

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 52/145 (35%), Gaps = 34/145 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVA-CLIVKDGIVIGRGV----------------- 46
           ++D  FM  A   ++        N  V  C++ +   ++G G                  
Sbjct: 10  TWDEYFMGVACLSAQRSK---DPNTQVGACVVNRKKKIVGIGYNGFPTGCSDDELPWARE 66

Query: 47  -----TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                T Y    HAE+ A L     +  G T YV L PC+       CA+ II+ GI+ +
Sbjct: 67  GGALDTKYAYVCHAELNAILNSIVSDLEGCTLYVALFPCNE------CAKIIIQSGIKEI 120

Query: 101 VVCVDDP-DVRVSGRGLQWLSQKGI 124
           V   D   +  +       L   G+
Sbjct: 121 VYLSDKYAETDIVRASKTMLEMAGV 145


>gi|47156908|gb|AAT12300.1| cytidine and deoxycytidylate deaminase-like protein [Antonospora
           locustae]
          Length = 156

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 48/162 (29%), Gaps = 16/162 (9%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAG 64
           +FM  A+  +     L +    V C++V++  VI RG            HAE+ AL    
Sbjct: 6   QFMDEAVSEAEKA--LEAGEVPVGCVVVREDAVISRGHNMTNRESDPLAHAELVALRHC- 62

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
             A     Y+T EPC          +        RV       +    G  +     + +
Sbjct: 63  ASAESLVFYITCEPCIMCLGVLGRIRA-------RVFYGCR--NPIFGGTTVLGGVSEAL 113

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM 166
                 ES  ++    +L        +        Q      
Sbjct: 114 CTHVHRESAVRLLQRFFLMENCNAPPNKRRPKEKRQQRHWSP 155


>gi|326915810|ref|XP_003204205.1| PREDICTED: tRNA-specific adenosine deaminase 2-like [Meleagris
           gallopavo]
          Length = 165

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 21/116 (18%)

Query: 16  RFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEAR--- 68
           + +     L +    V CL+V DG  IG+G            HAE+ A+++  E  +   
Sbjct: 4   KLAEAQEALEAGEVPVGCLLVYDGEAIGKGRNEVNETKNATRHAEMVAIDQVLEWCQQHK 63

Query: 69  --------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
                    +  YVT+EPC        CA  +    I RVV    +      G  L
Sbjct: 64  KAHEEVFSHSVLYVTVEPCIM------CAAALRLMKIPRVVYGCRNERFGGCGSVL 113


>gi|325300417|ref|YP_004260334.1| bifunctional deaminase-reductase domain-containing protein
           [Bacteroides salanitronis DSM 18170]
 gi|324319970|gb|ADY37861.1| bifunctional deaminase-reductase domain protein [Bacteroides
           salanitronis DSM 18170]
          Length = 277

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 81/239 (33%), Gaps = 26/239 (10%)

Query: 136 IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195
            +L +   +    + +I   +  S D  I         I G      +  L    D+ L 
Sbjct: 42  HYLCSRNKKYNIMKPYIICHMMASIDGRIDCDMTER--IGGNEYYEALEQL--ACDSTLS 97

Query: 196 GIGTV----------LADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           G  T+            D+P      +     E +   I +D    L    K  +   L 
Sbjct: 98  GRVTMQMHYALPEPFTTDNPAPANAPSVYKATEANGYTIAIDSRGTLRWPGK--EADGLP 155

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGR-GVTSLLVEGGAAVAH 300
            ++I +E          R++ I+ I    +  DL + + IL  +  V  L + GG  +  
Sbjct: 156 LLVITSEKVSQAYLDTLRQQGISWIAIGKEGIDLSQAVQILNEQFNVKRLAIVGGGHING 215

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEE----GYLEKNFMCVRRDYFGSD-VCLEY 354
           +F+ + L+D + +     + G  G+ +  +      Y          +  G + V L Y
Sbjct: 216 AFLRAGLLDEVSIVIGAGIDGRAGMTAVFDGIGDKDYPTTLLKLKSMERVGENSVWLRY 274


>gi|239942817|ref|ZP_04694754.1| putative deaminase [Streptomyces roseosporus NRRL 15998]
 gi|291446287|ref|ZP_06585677.1| deaminase [Streptomyces roseosporus NRRL 15998]
 gi|291349234|gb|EFE76138.1| deaminase [Streptomyces roseosporus NRRL 15998]
          Length = 142

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 47/128 (36%), Gaps = 21/128 (16%)

Query: 30  SVACLIV-KDGIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPC 79
            V  +++  DG  +  G            HAE+ AL  A E          T  VTLEPC
Sbjct: 18  PVGAVVLGPDGTELATGHNEREATGDPTAHAEILALRRAAEAVGEWRLTDCTLVVTLEPC 77

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEG 134
                   CA  +++  + RVV    D     +G          L+ +  ++  ++E E 
Sbjct: 78  ------TMCAGALVQSRVARVVYGARDEKAGAAGSLWDVIRDRRLNHRPEVIAGVLEREC 131

Query: 135 KIFLHAYL 142
              L A+ 
Sbjct: 132 AEQLTAFF 139


>gi|302329844|gb|ADL20038.1| Cytosine/adenosine deaminase [Corynebacterium pseudotuberculosis
           1002]
          Length = 151

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 53/149 (35%), Gaps = 27/149 (18%)

Query: 11  MSAALRFSRWHVGLTST-NPSVACLIV-KDGIVIGRGVTAYGGCP----HAEVQALEEA- 63
           M  A+  ++     T   +  V  +I   DG V+GRGV           HAE+ A+ EA 
Sbjct: 9   MRQAIIQAQ----ATPPGDIPVGAVIFGPDGEVLGRGVNRREADRDPLGHAEIMAIREAV 64

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                G      T  VTLEPC        CA  ++   I R+     +P     G     
Sbjct: 65  ANHDDGWRLTDCTLAVTLEPC------TMCAGALVGARIGRIFFGAYEPKTGACGSAFDV 118

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYL 142
           +    +     +   +++ E    +  + 
Sbjct: 119 VRDPAVLHVPEVRGGILQDECAALVTHFF 147


>gi|240140677|ref|YP_002965157.1| tRNA-specific adenosine deaminase [Methylobacterium extorquens AM1]
 gi|240010654|gb|ACS41880.1| tRNA-specific adenosine deaminase [Methylobacterium extorquens AM1]
          Length = 147

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 43/127 (33%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            V   +V+DG V+        T      HAE+ A+  A      E   G   YVTLEPC 
Sbjct: 22  PVGAAVVRDGTVLAVAGNRPRTLCDPTAHAEILAIRAACAALRDERLTGCDLYVTLEPC- 80

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPD---VRVSGRGLQW--LSQKGIIVDRMMESEGK 135
                P CA  I    IRR+     DP    V    R            +     ESE  
Sbjct: 81  -----PMCAGAIAFARIRRLYYAASDPKGGGVEHGPRVFNQPTCHHAPEVYSGFRESEAA 135

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 136 GLLREFF 142


>gi|190348437|gb|EDK40888.2| hypothetical protein PGUG_04986 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 338

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 46/146 (31%), Gaps = 43/146 (29%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-- 53
           S+D+ FM  A   +            V C++V+   VI  G             GGCP  
Sbjct: 183 SWDSYFMRLA-DLAALRSNCMKR--RVGCVVVRGNRVIATGYNGTPRNLPNCNEGGCPRC 239

Query: 54  ----------------HAEVQALEEAGEE-------ARGATAYVTLEPCSHYGRSPPCAQ 90
                           HAE  AL EAG +             Y    PC        C+ 
Sbjct: 240 NMGHGSGAELSTCLCLHAEENALLEAGRDRISRSHPDERGVLYCNTCPCL------TCSI 293

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGL 116
            I++ GI+ VV          S R +
Sbjct: 294 KIVQSGIKEVVYAQSYSMDESSHRVM 319


>gi|146414121|ref|XP_001483031.1| hypothetical protein PGUG_04986 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 338

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 46/146 (31%), Gaps = 43/146 (29%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-- 53
           S+D+ FM  A   +            V C++V+   VI  G             GGCP  
Sbjct: 183 SWDSYFMRLA-DLAALRSNCMKR--RVGCVVVRGNRVIATGYNGTPRNLPNCNEGGCPRC 239

Query: 54  ----------------HAEVQALEEAGEE-------ARGATAYVTLEPCSHYGRSPPCAQ 90
                           HAE  AL EAG +             Y    PC        C+ 
Sbjct: 240 NMGHGSGAELSTCLCLHAEENALLEAGRDRISRSHPDERGVLYCNTCPCL------TCSI 293

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGL 116
            I++ GI+ VV          S R +
Sbjct: 294 KIVQSGIKEVVYAQSYSMDESSHRVM 319


>gi|327542899|gb|EGF29355.1| cytosine deaminase [Rhodopirellula baltica WH47]
          Length = 149

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 55/148 (37%), Gaps = 20/148 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAGE 65
           F+ AAL  +R  +        +  ++V D  ++ RG       G    HAE+  LE AG 
Sbjct: 4   FLQAALDEARLGLNEHG--IPIGSVLVIDNEIVSRGHNRRIQNGSSILHAEMDCLERAGR 61

Query: 66  EARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                   +T Y TL PC        C+   +   I R++V  +            ++  
Sbjct: 62  LTANDYSRSTLYSTLSPCDM------CSGAALLYKIPRIIVGENQTFQGPES----YVRS 111

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           +G+ +  + + +    + A++       
Sbjct: 112 RGVDLQIVNDPDCIELMRAFIQNNPTLW 139


>gi|323464316|gb|ADX76469.1| ComE operon protein 2, putative [Staphylococcus pseudintermedius
           ED99]
          Length = 153

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 51/146 (34%), Gaps = 34/146 (23%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M    +   FM+ +   +      T T  SV   I KD  +I  G               
Sbjct: 1   MKRIQWHEYFMAQSHLLALRS---TCTRLSVGATITKDNRIIAGGYNGSVSGEVHCIDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A+ +    G     AT YVT  PC +      C + II+ GI+
Sbjct: 58  CLMEDGHCIRTIHAEMNAILQCSKQGVSTENATIYVTHFPCLN------CTKSIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGI 124
            +    D  +   +   ++ L Q G+
Sbjct: 112 TIYYAEDYHNHDYA---MKLLEQSGV 134


>gi|303257995|ref|ZP_07344004.1| cytidine/deoxycytidylate deaminase family protein [Burkholderiales
           bacterium 1_1_47]
 gi|302859338|gb|EFL82420.1| cytidine/deoxycytidylate deaminase family protein [Burkholderiales
           bacterium 1_1_47]
          Length = 138

 Score = 59.9 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 35/151 (23%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA------------ 48
           M +   +  +M+ A   ++           V C+IVK+  +I  G               
Sbjct: 1   MDIKKDNEMYMTIAQIAAQRSYAKRLK---VGCVIVKNHSIISFGWNGMPTGYDNCCEYE 57

Query: 49  -------YGGCPHAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A   L + G  + GA  ++T  PC H      C+  I +CGI 
Sbjct: 58  VDGKLVTRPEVQHAELNAIAKLAQNGYSSNGAKIFITHSPCIH------CSLLIQKCGIN 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            V    +  D      G+Q+L + GI V+++
Sbjct: 112 EVYYHENYRD----DAGIQFLKKAGIKVEQL 138


>gi|284990464|ref|YP_003409018.1| bifunctional deaminase-reductase domain-containing protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284063709|gb|ADB74647.1| bifunctional deaminase-reductase domain protein [Geodermatophilus
           obscurus DSM 43160]
          Length = 240

 Score = 59.9 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 73/197 (37%), Gaps = 27/197 (13%)

Query: 166 MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT--------VLAD------DPELTCRL 211
                S  +     K    +LR  +DA+LVG GT        V AD         L   +
Sbjct: 42  TVEGRSAGLGSPGDKRVFRVLRTLADAVLVGHGTAAAEGYRPVAADSAVGRLRAALGRPV 101

Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC- 270
           +        R  L P  +L         A+   V++     DP    A   + + ++ C 
Sbjct: 102 SAPVVVVSRRASLAPGDRL---------AVAPTVLVTCAAADPDRRAALGDEGVTVLVCG 152

Query: 271 -DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG--IPS 327
            D  DL   L  L  RG+  L+ EGG A+  + + + +VD + L  +  ++G     +  
Sbjct: 153 DDDVDLPTALDALAERGLEQLVCEGGPALLTAALAAGVVDELDLTIAPALVGGPDRLLAG 212

Query: 328 PLEEGYLEKNFMCVRRD 344
           PL +    +    +  D
Sbjct: 213 PLPDVVRPRLLQVLEED 229


>gi|330825481|ref|YP_004388784.1| CMP/dCMP deaminase zinc-binding protein [Alicycliphilus
           denitrificans K601]
 gi|329310853|gb|AEB85268.1| CMP/dCMP deaminase zinc-binding protein [Alicycliphilus
           denitrificans K601]
          Length = 358

 Score = 59.9 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 49/127 (38%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  ++V+ G VI  G  A         HAE+ AL  A          G T YVTLEPC+
Sbjct: 28  PVGAVLVRGGEVIATGRNAPIAGHDPTAHAEIAALRAAAARLGNYRLDGCTLYVTLEPCA 87

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGK 135
                  CA  ++   + RVV    DP    +G  +       L+ +  +   ++  E  
Sbjct: 88  M------CAGAMLHARLPRVVYGAADPKTGAAGSVVDLFAEPRLNHQTRVAGGVLAEECG 141

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 142 ALLSGFF 148


>gi|312374791|gb|EFR22274.1| hypothetical protein AND_15517 [Anopheles darlingi]
          Length = 193

 Score = 59.9 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 50/164 (30%), Gaps = 34/164 (20%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
             FM+ A   ++        +  V   IV  D  V+G G   +                 
Sbjct: 26  EYFMAMAFLAAKRSK---DPSTQVGACIVNEDKRVVGLGYNGFPTGCNDDEFPWSKTSSD 82

Query: 54  ----------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                     HAEV A L +   + +  T YV L PC+       CA+ II+  IR VV 
Sbjct: 83  PLETKYLYVCHAEVNAILNKNSADVKNCTMYVALFPCNE------CAKIIIQSAIREVVY 136

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQV 146
             D    +      + +     +     +      L  +     
Sbjct: 137 MSDKHAHKEHTIAAKRMFDAAGVKYTKYKPRHSRILIDFTEIDW 180


>gi|239989276|ref|ZP_04709940.1| putative deaminase [Streptomyces roseosporus NRRL 11379]
          Length = 174

 Score = 59.9 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 47/128 (36%), Gaps = 21/128 (16%)

Query: 30  SVACLIV-KDGIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPC 79
            V  +++  DG  +  G            HAE+ AL  A E          T  VTLEPC
Sbjct: 50  PVGAVVLGPDGTELATGHNEREATGDPTAHAEILALRRAAEAVGEWRLTDCTLVVTLEPC 109

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEG 134
                   CA  +++  + RVV    D     +G          L+ +  ++  ++E E 
Sbjct: 110 ------TMCAGALVQSRVARVVYGARDEKAGAAGSLWDVIRDRRLNHRPEVIAGVLEREC 163

Query: 135 KIFLHAYL 142
              L A+ 
Sbjct: 164 AEQLTAFF 171


>gi|116326433|ref|YP_803153.1| dCMP deaminase [Enterobacteria phage RB32]
 gi|228861145|ref|YP_002854168.1| dCMP deaminase [Enterobacteria phage RB51]
 gi|228861526|ref|YP_002854547.1| dCMP deaminase [Enterobacteria phage RB14]
 gi|115344026|gb|ABI95035.1| dCMP deaminase [Enterobacteria phage RB32]
 gi|227438542|gb|ACP30855.1| dCMP deaminase [Enterobacteria phage RB14]
 gi|227438819|gb|ACP31131.1| dCMP deaminase [Enterobacteria phage RB51]
 gi|291290435|dbj|BAI83230.1| dCMP deaminase [Enterobacteria phage AR1]
          Length = 193

 Score = 59.9 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 45/176 (25%), Gaps = 68/176 (38%)

Query: 31  VACLIVKDGIVIGRGV-------------------------------------------- 46
           V  +I K+G +I  G                                             
Sbjct: 24  VGAVIEKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHTIIQGHKPECVSFGSTDR 83

Query: 47  ------TAYGGCP-------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE+ A+      G    GAT YVTL PC      P CA+
Sbjct: 84  FVLAKEHRSAHSEWSSKNEIHAELNAILFAARNGSSIEGATMYVTLSPC------PDCAK 137

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQV 146
            I + GI+++V C               L   GI V  + +          +    
Sbjct: 138 AIAQSGIKKLVYCETYDK--NKPGWDDILRNAGIEVFNVPKKNLNKLNWENINEFC 191


>gi|9632715|ref|NP_049828.1| Cd dCMP deaminase [Enterobacteria phage T4]
 gi|118398|sp|P16006|DCTD_BPT4 RecName: Full=Deoxycytidylate deaminase; AltName: Full=dCMP
           deaminase; Short=dCD
 gi|5354339|gb|AAD42546.1|AF158101_133 Cd dCMP deaminase [Enterobacteria phage T4]
 gi|215838|gb|AAA32489.1| deoxycytidylate deaminase (EC 3.5.4.12) [Enterobacteria phage T4]
 gi|299780576|gb|ADJ39938.1| deoxycytidylate deaminase [Enterobacteria phage T4T]
          Length = 193

 Score = 59.9 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 45/176 (25%), Gaps = 68/176 (38%)

Query: 31  VACLIVKDGIVIGRGV-------------------------------------------- 46
           V  +I K+G +I  G                                             
Sbjct: 24  VGAVIEKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAIIQGHKPECVSFGSTDR 83

Query: 47  ------TAYGGCP-------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE+ A+      G    GAT YVTL PC      P CA+
Sbjct: 84  FVLAKEHRSAHSEWSSKNEIHAELNAILFAARNGSSIEGATMYVTLSPC------PDCAK 137

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQV 146
            I + GI+++V C               L   GI V  + +          +    
Sbjct: 138 AIAQSGIKKLVYCETYDK--NKPGWDDILRNAGIEVFNVPKKNLNKLNWENINEFC 191


>gi|330858731|ref|YP_004415106.1| putative deoxycytidylate deaminase [Shigella phage Shfl2]
 gi|327397665|gb|AEA73167.1| putative deoxycytidylate deaminase [Shigella phage Shfl2]
          Length = 193

 Score = 59.9 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 45/176 (25%), Gaps = 68/176 (38%)

Query: 31  VACLIVKDGIVIGRGV-------------------------------------------- 46
           V  +I K+G +I  G                                             
Sbjct: 24  VGAVIEKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHTIIQGHKPECVSFGSTDR 83

Query: 47  ------TAYGGCP-------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE+ A+      G    GAT YVTL PC      P CA+
Sbjct: 84  FVLAKEHRNAHSEWSSKNEIHAELNAILFAARNGSSIEGATMYVTLSPC------PDCAK 137

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQV 146
            I + GI+++V C               L   GI V  + +          +    
Sbjct: 138 AIAQSGIKKLVYCETYDK--NKPGWDDILRNAGIEVFNVPKKNLNKLNWENINEFC 191


>gi|194016099|ref|ZP_03054714.1| riboflavin biosynthesis protein RibD C- domain protein [Bacillus
           pumilus ATCC 7061]
 gi|194012454|gb|EDW22021.1| riboflavin biosynthesis protein RibD C- domain protein [Bacillus
           pumilus ATCC 7061]
          Length = 180

 Score = 59.9 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
            D+   +  L       + + GG  +   FI + LVD + L  + ++IG  GIP      
Sbjct: 94  EDILSFMKKLKHEEGQHIWIVGGGELLQFFIKAGLVDELYLQIAPVMIGR-GIP-LFSPA 151

Query: 333 YLEKNFMCVRRDYF 346
            +E  F       +
Sbjct: 152 DIESRFSLKEVKQY 165


>gi|312621259|ref|YP_004022872.1| cmp/dcmp deaminase zinc-binding protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312201726|gb|ADQ45053.1| CMP/dCMP deaminase zinc-binding protein [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 143

 Score = 59.9 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 17/124 (13%)

Query: 30  SVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCSHYG 83
            VA  IVK+G +I      +     HAE+ A+ +A      ++ R    +VT EPC    
Sbjct: 21  PVAAAIVKNGKIISIKRNDSKKAIYHAEILAIIDATSKLSTKDLRNCEMFVTKEPC---- 76

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGKIFL 138
             P C   I+   ++R+     D  +  +           L+ K  ++  + E E ++ L
Sbjct: 77  --PMCMSAIVLSKVKRLYFGARDFKMGAAESCFNLSQNPFLNHKVEVIGGICEDECRLLL 134

Query: 139 HAYL 142
             + 
Sbjct: 135 KRFF 138


>gi|269961834|ref|ZP_06176191.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833412|gb|EEZ87514.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 210

 Score = 59.9 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 78/246 (31%), Gaps = 60/246 (24%)

Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--------- 174
           I+   +  +   +  H +            + IA S D  I         +         
Sbjct: 12  IVELILNHTLAWLKHHHFDE----VLMANIVFIATSLDGYIADKQGKLDWLHSVPNPDNI 67

Query: 175 -TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233
            TGF S      L  + D +++G  T+                     ++L         
Sbjct: 68  DTGFFS------LMERIDGLVMGRNTLD--------------------VVLSFDCDWPYS 101

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
             +           V  N    +   +  K    ++    +LK +L  L  +G   L ++
Sbjct: 102 KPVF----------VLSNTMTEVPQGYEDK----VFLVKGELKDVLAELNAKGFNDLYID 147

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-NFMCVRRDYFGSDVC- 351
           GG     +F+   L+D +++ R  I++G G   +PL     +  NF   + +     +  
Sbjct: 148 GGVT-IQNFLKEDLIDEMVITRFPILLGGG---APLFGDLDQPLNFKVTKSEVVLDTLVQ 203

Query: 352 LEYIGK 357
             Y+ +
Sbjct: 204 TTYVRE 209


>gi|293378374|ref|ZP_06624543.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Enterococcus faecium PC4.1]
 gi|292643238|gb|EFF61379.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Enterococcus faecium PC4.1]
          Length = 173

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVE 293
           KT   A   + TE   P         N  +   D      +    L  L       + V 
Sbjct: 52  KTYQEAKKYLETEAIYPEKKNFVFSTNAQLQLPDAEVVHEEPVAFLKNLQMAEGKDIWVV 111

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           GG  +    +  +++D   +  + +++G+ GIP   ++G  E  F  +    FG  + L 
Sbjct: 112 GGGRLIKPLVEHQMIDEWYIQIAPVLLGD-GIP-LFQKGTYEARFELLDTTRFGEFIELH 169

Query: 354 YIGK 357
           Y+ K
Sbjct: 170 YVRK 173


>gi|295442884|ref|NP_596505.2| tRNA specific adenosine deaminase subunit Tad2 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|259016150|sp|O94642|TAD2_SCHPO RecName: Full=tRNA-specific adenosine deaminase subunit tad2;
           AltName: Full=tRNA-specific adenosine-34 deaminase
           subunit tad2
 gi|254745608|emb|CAB38514.2| tRNA specific adenosine deaminase subunit Tad2 (predicted)
           [Schizosaccharomyces pombe]
          Length = 389

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 53/158 (33%), Gaps = 21/158 (13%)

Query: 8   ARFMSAALRFSRWHVGLT-STNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEE 62
             +M  A                  +C+ V  G VIGRG         G  HAE+ A+E+
Sbjct: 215 ETYMKLAHEILNLGPYFVIQPRSPGSCVFVYKGEVIGRGFNETNCSLSGIRHAELIAIEK 274

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
             E       +  T YVT+EPC        CA  + +  I+ V     +      G    
Sbjct: 275 ILEHYPASVFKETTLYVTVEPCLM------CAAALKQLHIKAVYFGCGNDRFGGCGSVFS 328

Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRS 150
               + I     +   +  SE  + +  +  ++  K  
Sbjct: 329 INKDQSIDPSYPVYPGLFYSEAVMLMREFYVQENVKAP 366


>gi|188591891|ref|YP_001796489.1| guanine deaminase [Cupriavidus taiwanensis LMG 19424]
 gi|170938265|emb|CAP63250.1| Guanine deaminase [Cupriavidus taiwanensis LMG 19424]
          Length = 145

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 21/123 (17%)

Query: 11  MSAALRFS--RWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA- 63
           M  A+R +      G          ++V DG V+  G    V ++    HAE++A+  A 
Sbjct: 1   MREAVRLAVANRDRGAR----PFGAVLVLDGEVVATGVNDIVHSHDPTTHAEMEAVRAAA 56

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                 + RG+  Y +  PC      P C   +   G++ V    D+ D    G   +  
Sbjct: 57  RKLGRPDLRGSVVYASGHPC------PMCLAAMTMAGVQAVYYAFDNHDAAPYGMSSEAA 110

Query: 120 SQK 122
            Q 
Sbjct: 111 YQA 113


>gi|255027259|ref|ZP_05299245.1| hypothetical protein LmonocytFSL_14643 [Listeria monocytogenes FSL
           J2-003]
          Length = 183

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 40/173 (23%)

Query: 1   MPVSSFDARFMSAALRFSRWHV---GLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP--- 53
           M   ++D  FM      ++ H+     T T   V   IV+D  +I  G      G     
Sbjct: 1   MQRIAWDQFFM------AQSHLISSRSTCTRLMVGATIVRDKRIIAGGYNGSIAGGDHCA 54

Query: 54  ---------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                          HAE+ A+ +    G     A  YVT  PC        C + II+ 
Sbjct: 55  EHGCYVVDGHCIRTIHAEMNAILQCAKFGATTDKAELYVTHFPCL------ACTKSIIQA 108

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
           GI++V    D  +   +   L+  +  G+ + ++   E  + ++ +   ++  
Sbjct: 109 GIKKVYFAKDYKNHPYA---LELFNIAGVELQKVEFDESVLQVNNWNGEKMHT 158


>gi|226228088|ref|YP_002762194.1| putative 5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Gemmatimonas aurantiaca T-27]
 gi|226091279|dbj|BAH39724.1| putative 5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Gemmatimonas aurantiaca T-27]
          Length = 229

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 5/113 (4%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLL 279
           + +D   +L   S          V++V+         A + + I+ I       D    L
Sbjct: 89  VAVDTRGELLWASN--DIGDDHLVVVVSGLAHVSHLQALQAQGISFIVAGALAVDFSLAL 146

Query: 280 TILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             L     V +L++EGG  V  + +   LVD I L  + +V G  G PS  + 
Sbjct: 147 EKLAAHFAVKTLMLEGGGQVNRAMLERGLVDEISLLIAPVVDGRAGAPSVFDG 199


>gi|239948393|ref|ZP_04700146.1| cytosine/adenosine deaminase [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922669|gb|EER22693.1| cytosine/adenosine deaminase [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 159

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 21/130 (16%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTN-PSVACLIVK--DGIVIGRGVT----AYGGCPHAE 56
           ++F+  FM  AL+ +R        N   V  +IV   +  +I               HAE
Sbjct: 9   ANFNNFFMEQALKQARIAF---DKNEVPVGAVIVDRLNQKIIASTHNNTEEKNNALCHAE 65

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ EA      +       YVTLE C+       CA  I    ++R+     D     
Sbjct: 66  IIAINEACNLIYSKNLNDYDIYVTLESCAM------CAAAIAHSRLKRLFYGAFDSKHGA 119

Query: 112 SGRGLQWLSQ 121
               L++ + 
Sbjct: 120 VESNLRYFNS 129


>gi|295674403|ref|XP_002797747.1| deoxycytidylate deaminase [Paracoccidioides brasiliensis Pb01]
 gi|226280397|gb|EEH35963.1| deoxycytidylate deaminase [Paracoccidioides brasiliensis Pb01]
          Length = 350

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 48/148 (32%), Gaps = 41/148 (27%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP--- 53
           +D  FM  A   +            V C+IV++  VI  G             GGCP   
Sbjct: 185 WDQYFMQLA-SLAAQRSNCMKR--RVGCVIVREKRVISTGYNGTPRNTKNCNEGGCPRCN 241

Query: 54  ---------------HAEVQALEEAGEEARG--ATAYVTLEPCSHYGRSPPCAQFIIECG 96
                          HAE  AL EAG E  G  A  Y    PC        C+  I + G
Sbjct: 242 CGEGGGAALSTCLCIHAEENALLEAGRERIGEAAILYCNTCPCL------TCSVKIAQLG 295

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           I  VV        + +      L + G+
Sbjct: 296 ISEVVYSQSYNMDKETAS---ILEEAGV 320


>gi|241563436|ref|XP_002401703.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215501895|gb|EEC11389.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 159

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 21/130 (16%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTN-PSVACLIVK--DGIVIGRGVT----AYGGCPHAE 56
           ++F+  FM  AL+ +R        N   V  +IV   +  +I               HAE
Sbjct: 9   ANFNNFFMEQALKQARIAF---DKNEVPVGAVIVDRLNQKIIASTHNNTEEKNNALCHAE 65

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ EA      +       YVTLE C+       CA  I    ++R+     D     
Sbjct: 66  IIAINEACNLIYSKNLNDYDIYVTLESCAM------CAAAIAHSRLKRLFYGAFDSKHGA 119

Query: 112 SGRGLQWLSQ 121
               L++ + 
Sbjct: 120 VESNLRYFNS 129


>gi|212716206|ref|ZP_03324334.1| hypothetical protein BIFCAT_01122 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660866|gb|EEB21441.1| hypothetical protein BIFCAT_01122 [Bifidobacterium catenulatum DSM
           16992]
          Length = 149

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 51/147 (34%), Gaps = 23/147 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGC----PHAEVQALEEA-- 63
           M  A+  +R           V  +++   G VIGRG            HAEV+A+ +A  
Sbjct: 7   MGLAIELAREAA--AEGEVPVGAVVLDAGGAVIGRGRNLREAHADPLAHAEVKAMTQAAR 64

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                     T  VTLEPC      P CA   ++  + R+V    D  +   G       
Sbjct: 65  SLGTWNLADCTLIVTLEPC------PMCAGACLQTHVGRIVFGAWDAKLGACGSIWDIPR 118

Query: 121 QKGI-----IVDRMMESEGKIFLHAYL 142
              +     +V  + E E    +  + 
Sbjct: 119 DPHVGHVPEVVGGVCEMECARLMTDFF 145


>gi|123424979|ref|XP_001306702.1| RibD C-terminal domain containing protein [Trichomonas vaginalis
           G3]
 gi|121888291|gb|EAX93772.1| RibD C-terminal domain containing protein [Trichomonas vaginalis
           G3]
          Length = 289

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 75/199 (37%), Gaps = 29/199 (14%)

Query: 191 DAILVGIGTVLADD---PELTCRLNGLQEHSPMR--------IILDPHFKLSLDSKIIKT 239
           DAI++G  TV   +   P L      + E   +         ++ D   K+   +   +T
Sbjct: 47  DAIMIGTKTVTEMNNEQPVLNSDEKDVPEGDFIAKSAKALFLVVPDSAGKIGWKNNYFET 106

Query: 240 A--LLAPVI-IVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGR-GVTSLLVE 293
                + +I I++E   P      R  NI+ I    +  D+      L  + G+ +L V 
Sbjct: 107 VYFQKSNIIEILSEKASPQYRNYLRSLNISYIIAGKEHVDVVPAAKALKQKFGINTLGVL 166

Query: 294 GGAAVAHSFINSRLVDSI-ILYRSQIVIGEGGIPS-------PLEEGYLEKNFMCVRRDY 345
           GGA +  SF+ + +VD + I   +    G+G   S       P         F     D 
Sbjct: 167 GGATINWSFVQAGIVDELSICLVAA---GDGANKSLTLFEKAPQIVENSPVEFELKSIDR 223

Query: 346 FGSD-VCLEYIGKNLCLQE 363
             ++ + L+Y  K    +E
Sbjct: 224 LSTNGLWLKYTPKGARNEE 242


>gi|325680467|ref|ZP_08160016.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Ruminococcus albus 8]
 gi|324107836|gb|EGC02103.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Ruminococcus albus 8]
          Length = 159

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 49/145 (33%), Gaps = 34/145 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV-------------TAYG 50
           S+D  FM  A   +R        N  V   IV +   ++  G                  
Sbjct: 8   SWDEYFMGIAHLSARRSK---DPNTQVGACIVSEENKILSVGYNGMPTGCNDDDMPWDRE 64

Query: 51  GC---------PHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           G           HAE+ A L  +    + A  YV+L PC+       CA+ II+ GI+ V
Sbjct: 65  GEFLETKYPFVCHAELNAILNRSTGSLKNAKIYVSLFPCNE------CAKAIIQSGIKEV 118

Query: 101 VVCVDDP-DVRVSGRGLQWLSQKGI 124
           +   D   D        +     G+
Sbjct: 119 IYGDDKYADTDNVRASKRMFDMAGV 143


>gi|319785885|ref|YP_004145360.1| cytosine deaminase [Pseudoxanthomonas suwonensis 11-1]
 gi|317464397|gb|ADV26129.1| Cytosine deaminase [Pseudoxanthomonas suwonensis 11-1]
          Length = 158

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 17/155 (10%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           M  +      ++ A+  +R  +      P  A L   DG ++GRG            H E
Sbjct: 1   MSQTPDHRAMLAIAVEEARQGLAE-GGIPIGAALFAADGTLLGRGHNRRVQENDPSVHGE 59

Query: 57  VQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
             A  +AG +   R      TL PC +      C+  + + GI  VV+     +      
Sbjct: 60  TDAFRKAGRQRSYRDTIMVTTLSPCWY------CSGLVRQFGIGTVVMG----EAVNFQG 109

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           G  WL ++G+ V  + + E    L  ++       
Sbjct: 110 GHDWLREQGVEVVDLDDDECIRMLGDWIAANPHVW 144


>gi|226941431|ref|YP_002796505.1| CumB [Laribacter hongkongensis HLHK9]
 gi|226716358|gb|ACO75496.1| CumB [Laribacter hongkongensis HLHK9]
          Length = 171

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 50/146 (34%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE----- 65
           M  A+  ++      +    V  L+V +G VIGRG  A  G       A   A       
Sbjct: 1   MRQAILLAQEAA--AAGEVPVGALVVLEGKVIGRGANAPIGRHDPTAHAEIAALRAAAER 58

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW--- 118
                  GA  YVTLEPC+       CA  I    I RVV    D     +G  +     
Sbjct: 59  AGNYRLPGAELYVTLEPCAM------CAGAIQHARIARVVFGASDAKTGAAGSVVDLFAE 112

Query: 119 --LSQKGIIVDRMMESEGKIFLHAYL 142
             L+    +   ++  E    L  + 
Sbjct: 113 PRLNHHAEVCGGLLADECAAVLSGFF 138


>gi|34581121|ref|ZP_00142601.1| cytosine deaminase [Rickettsia sibirica 246]
 gi|229587195|ref|YP_002845696.1| Cytosine deaminase [Rickettsia africae ESF-5]
 gi|28262506|gb|EAA26010.1| cytosine deaminase [Rickettsia sibirica 246]
 gi|228022245|gb|ACP53953.1| Cytosine deaminase [Rickettsia africae ESF-5]
          Length = 168

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 21/130 (16%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTN-PSVACLIVK--DGIVIGRGVT----AYGGCPHAE 56
           ++F+  FM  AL+ ++        N   V  ++V   +  +I               HAE
Sbjct: 9   ANFNNFFMEQALKQAKIAF---DKNEVPVGAVVVDRLNQKIIASTHNNTEEKNNALYHAE 65

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ EA      +       YVTLEPC+       CA  I    ++R+     D     
Sbjct: 66  IIAINEACNLISSKNLNDYDIYVTLEPCAM------CAAAIAHSRLKRLFYGASDSKHGA 119

Query: 112 SGRGLQWLSQ 121
               L++ + 
Sbjct: 120 VESNLRYFNS 129


>gi|298483515|ref|ZP_07001691.1| guanine deaminase [Bacteroides sp. D22]
 gi|298270272|gb|EFI11857.1| guanine deaminase [Bacteroides sp. D22]
          Length = 156

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 18/114 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGG----CPHAEVQALEE 62
              M  A+  S+ +V   +       +I  KDG ++  GV           HAEV A+  
Sbjct: 4   EALMRKAIELSKENV--VNGGGPFGAVIATKDGEIVATGVNRVTASCDPTAHAEVSAIRA 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           A       +  G   Y + EPC      P C   I    + ++    +  D + 
Sbjct: 62  AAAKLGTFDLSGYEIYTSCEPC------PMCLGAIYWARLDKMYYGNNKTDAKN 109


>gi|293571522|ref|ZP_06682545.1| riboflavin biosynthesis protein RibD C- domain protein
           [Enterococcus faecium E980]
 gi|291608388|gb|EFF37687.1| riboflavin biosynthesis protein RibD C- domain protein
           [Enterococcus faecium E980]
          Length = 173

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVE 293
           KT   A   + TE   P         N  +   D      +    L  L       + V 
Sbjct: 52  KTYQEAKKYLETEAIYPEKKNFVFSTNAQLQLPDAEVVHEEPVAFLKNLQMTEGKDIWVV 111

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           GG  +    +  +++D   +  + +++G+ GIP   ++G  E  F  +    FG  + L 
Sbjct: 112 GGGRLIKPLVEHQMIDEWYIQIAPVLLGD-GIP-LFQKGTYEARFELLDTTRFGEFIELH 169

Query: 354 YIGK 357
           Y+ K
Sbjct: 170 YVRK 173


>gi|241203269|ref|YP_002974365.1| CMP/dCMP deaminase zinc-binding [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857159|gb|ACS54826.1| CMP/dCMP deaminase zinc-binding [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 145

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 51/146 (34%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA--- 63
           M  AL  +R   G     P +  ++V D I + R             HAE+ A+  A   
Sbjct: 1   MEMALEEAR-AAGERGEVP-IGAVVVIDDIAVSRSGNRTRELKDVTAHAEIAAIRLACEA 58

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW--- 118
              E   GA  YVTLEPC        CA  I    IRR+    +DP       G+++   
Sbjct: 59  LGQERLAGADLYVTLEPC------TMCAAAISFARIRRLYYGAEDPKGGGVDNGVRFYGQ 112

Query: 119 --LSQKGIIVDRMMESEGKIFLHAYL 142
                   +     E +    L  + 
Sbjct: 113 PTCHHAPEVYSGFNEVQSANLLRRFF 138


>gi|306825613|ref|ZP_07458952.1| cytidine and deoxycytidylate deaminase [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|315612824|ref|ZP_07887735.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
           ATCC 49296]
 gi|304431974|gb|EFM34951.1| cytidine and deoxycytidylate deaminase [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|315314934|gb|EFU62975.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
           ATCC 49296]
          Length = 155

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 53/149 (35%), Gaps = 33/149 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           ++D  F + AL  +      T     V  ++VKD  VI  G                   
Sbjct: 7   AWDEYFAAQALLIANRS---TCKRAKVGAVLVKDNKVISTGYNGSVSGTEHCIDHECLVI 63

Query: 54  --------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                   HAEV A+ +  E    RG TAYVT  PC +      C + +++ G +RVV  
Sbjct: 64  EGHCVRTLHAEVNAILQGAERGVPRGFTAYVTHFPCLN------CTKQLLQVGCKRVVYI 117

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
                 R+         +KG  +  +   
Sbjct: 118 NQY---RMDDYAQYLYHEKGTELTHLPLE 143


>gi|302870406|ref|YP_003839043.1| CMP/dCMP deaminase [Micromonospora aurantiaca ATCC 27029]
 gi|302573265|gb|ADL49467.1| CMP/dCMP deaminase zinc-binding [Micromonospora aurantiaca ATCC
           27029]
          Length = 210

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 49/157 (31%), Gaps = 30/157 (19%)

Query: 8   ARFMSAALRFSRWHVGLTST-------NPSVACLIV-KDGIVIGRGVTAY----GGCPHA 55
             +M  AL  +    G           +  V  ++   DG  +  G            HA
Sbjct: 61  ELWMRRALEVA--VTGPDGPAADRDADDVPVGAVLYGPDGTELAIGRNERELTGDPTAHA 118

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           EV AL  A +          T  VTLEPC        CA  I    +  VV    +P   
Sbjct: 119 EVLALRRAAQRLGRWRLDDCTLVVTLEPC------TMCAGAIALARVSTVVFGAWEPKTG 172

Query: 111 VSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
             G     L  + +     +   ++E E    L A+ 
Sbjct: 173 AVGSLWDVLRDRRVTHRPEVYGGVLERESATLLRAFF 209


>gi|262038435|ref|ZP_06011809.1| dCMP deaminase [Leptotrichia goodfellowii F0264]
 gi|261747530|gb|EEY34995.1| dCMP deaminase [Leptotrichia goodfellowii F0264]
          Length = 161

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 33/149 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVA-CLIVKDGIVIGRGV----------------- 46
           S+D  FM  A       +     +  V  C+I +D  +IG G                  
Sbjct: 9   SWDEYFMGIAF---LSGMRSKDPSTQVGACIIDEDKKIIGIGYNGFPMGSSDDNMPWNKE 65

Query: 47  -----TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                T Y    HAE+ A+  + +  + A  YVT  PC+       CA+ I++ GI++V+
Sbjct: 66  GDFLNTKYPYVVHAELNAILNSIKSLKNAIIYVTHFPCNE------CAKAIVQSGIKKVI 119

Query: 102 VCVDDPDVRVSGR-GLQWLSQKGIIVDRM 129
              D      + +   +     G+    +
Sbjct: 120 YFSDKHKSLDATKASRKIFENAGVETVHL 148


>gi|114773341|ref|ZP_01450545.1| hypothetical protein OM2255_12392 [alpha proteobacterium HTCC2255]
 gi|114546275|gb|EAU49186.1| hypothetical protein OM2255_12392 [alpha proteobacterium HTCC2255]
          Length = 150

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 40/121 (33%), Gaps = 17/121 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG- 64
           FM  A+  ++     +     V  LI  +G +I               HAE+  +  A  
Sbjct: 7   FMPIAIIEAKKAA--SRGEVPVGALIEINGEIISSAGNRTRELKDPTAHAEILVIRNACS 64

Query: 65  ----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
               E   GA  YVTLEPC      P CA  I    I  +     D       +G    +
Sbjct: 65  ILGVERLIGANLYVTLEPC------PMCAAAISNTRIANLYFGARDIKSGGINQGPCIFN 118

Query: 121 Q 121
            
Sbjct: 119 H 119


>gi|292491509|ref|YP_003526948.1| guanine deaminase [Nitrosococcus halophilus Nc4]
 gi|291580104|gb|ADE14561.1| Guanine deaminase [Nitrosococcus halophilus Nc4]
          Length = 155

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 22/113 (19%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG-------CPHAEVQALE 61
            FM+ A+R +   +      P    LIV+DG ++     A  G         HAE+QA+ 
Sbjct: 4   EFMAEAIRLASQGMDDDLGGP-FGALIVRDGEILA---HACNGVVEACDPTAHAEIQAIR 59

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
            A +        G   Y + EPC      P C        +  +       D 
Sbjct: 60  MACKHINHFHLEGCVLYCSCEPC------PMCLGAAYWAHLDGIYYAASREDA 106


>gi|321478485|gb|EFX89442.1| hypothetical protein DAPPUDRAFT_190827 [Daphnia pulex]
          Length = 217

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 53/151 (35%), Gaps = 37/151 (24%)

Query: 5   SFDARFMSAA-LRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV---------------- 46
            +   FM+ A L   R     T     V   I   +  ++G G                 
Sbjct: 56  EWPEYFMAVAFLAAMRSKDPCTQ----VGACITDSNNRIVGVGYNGMPIGCSDEILPWGK 111

Query: 47  -------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                  T Y    HAE+ A+  +   + RG T YV L PC+       CA+ II+ GI+
Sbjct: 112 NSSQPLETKYMYVCHAEMNAIMNKNTADLRGCTLYVALFPCNE------CAKLIIQAGIK 165

Query: 99  RVVVCVD-DPDVRVSGRGLQWLSQKGIIVDR 128
           +VV   D   +   +       S  G+   +
Sbjct: 166 QVVYMSDKHKNKPSTEASKMMFSMAGVKCQQ 196


>gi|293376240|ref|ZP_06622483.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Turicibacter sanguinis PC909]
 gi|292645132|gb|EFF63199.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Turicibacter sanguinis PC909]
          Length = 157

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 50/151 (33%), Gaps = 33/151 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGC----------- 52
           S+D  FM  AL  +            V   IV +   ++G G   +              
Sbjct: 7   SWDEYFMGIALLSAMRSK---DPQTQVGACIVNEEHRIVGIGYNGFPHGCKDEEFPWERE 63

Query: 53  -----------PHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                       HAE  A+  +    +    YV+L PC        CA++II+ GI  +V
Sbjct: 64  GEFINTKYPYVVHAEQNAILNSTTSLKHCRLYVSLFPCHE------CAKYIIQSGINEIV 117

Query: 102 VCVDDP-DVRVSGRGLQWLSQKGIIVDRMME 131
              D       +    + L   G+   +M E
Sbjct: 118 YMSDKYAHTDSTLASKRMLDAAGVKYRQMAE 148


>gi|156372900|ref|XP_001629273.1| predicted protein [Nematostella vectensis]
 gi|156216269|gb|EDO37210.1| predicted protein [Nematostella vectensis]
          Length = 208

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 55/148 (37%), Gaps = 35/148 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
           S+D  FMS A   ++        +  V   IV K+  ++G G                  
Sbjct: 48  SWDDYFMSVAFLSAQRSK---DPSSQVGACIVNKERKIVGIGYNGMPNGCSDDELPWNRH 104

Query: 47  ------TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A L +   + +G T YV L PC+       C++ II+ G++ 
Sbjct: 105 ADDELDTKYPYVCHAEMNAILNKNSADVKGCTVYVALFPCNE------CSKIIIQAGLKE 158

Query: 100 VVVCVD-DPDVRVSGRGLQWLSQKGIIV 126
           VV   D   D        + L   G+  
Sbjct: 159 VVFVSDKYHDKPSMKASRRLLDLAGVKY 186


>gi|330817316|ref|YP_004361021.1| CMP/dCMP deaminase, zinc-binding protein [Burkholderia gladioli
           BSR3]
 gi|327369709|gb|AEA61065.1| CMP/dCMP deaminase, zinc-binding protein [Burkholderia gladioli
           BSR3]
          Length = 217

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 49/155 (31%), Gaps = 22/155 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
           P +  D R+M      +       +    V  +IV+   VI RG     G       A  
Sbjct: 29  PAAERDRRYMRM--ALAAAEAARAAGEVPVGAVIVRGDEVIARGFNHPIGGHDPSAHAEM 86

Query: 62  EAGE---------EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A              G   YVTLEPC        C+  I+   I RVV    DP     
Sbjct: 87  AALRAAAQALGNYRLPGCELYVTLEPCLM------CSGAIMHARIARVVYGAPDPKTGAC 140

Query: 113 GRGLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
           G  +       L+    +   ++  E    L ++ 
Sbjct: 141 GGVVDAFANPQLNHHTSVTGGVLAEECGDALRSFF 175


>gi|256392662|ref|YP_003114226.1| CMP/dCMP deaminase zinc-binding [Catenulispora acidiphila DSM
           44928]
 gi|256358888|gb|ACU72385.1| CMP/dCMP deaminase zinc-binding [Catenulispora acidiphila DSM
           44928]
          Length = 223

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 40/108 (37%), Gaps = 23/108 (21%)

Query: 10  FMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
           ++  A+  ++      G          +IV+DG VI  GV           HAE+ A+ E
Sbjct: 76  WLGQAIALAQDNVEAGGW-----PFGAVIVRDGAVIATGVNEVLADGDPTAHAEMLAIRE 130

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           A          GA  Y + EPC      P C   I   G+  +V   D
Sbjct: 131 ACRVLKDINLAGAVLYASCEPC------PMCLAAIKWAGLTGIVYAAD 172


>gi|86748295|ref|YP_484791.1| CMP/dCMP deaminase, zinc-binding [Rhodopseudomonas palustris HaA2]
 gi|86571323|gb|ABD05880.1| tRNA-adenosine deaminase [Rhodopseudomonas palustris HaA2]
          Length = 148

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 47/127 (37%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            + C+IV+ G VI     R +T      HAE+ A+ EA      E       YVTLEPC 
Sbjct: 24  PIGCVIVRAGAVIASAGNRTLTDRDPTAHAELLAIREAARKLGSERLVDCDLYVTLEPC- 82

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGK 135
                  CA  I    IRR+     DP       G+++           I   + E E  
Sbjct: 83  -----TMCAGAISFARIRRLYFGAFDPKGGAVESGVRFFGQPTCHHAPEIYSGVGEREAA 137

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 138 ALLREFF 144


>gi|302407882|ref|XP_003001776.1| diaminohydroxyphosphoribosylamino-pyrimidine deaminase
           [Verticillium albo-atrum VaMs.102]
 gi|261359497|gb|EEY21925.1| diaminohydroxyphosphoribosylamino-pyrimidine deaminase
           [Verticillium albo-atrum VaMs.102]
          Length = 177

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 59/153 (38%), Gaps = 22/153 (14%)

Query: 2   PVSSFDAR-FMSAALRFSRWHVGLTSTNPSVACLIVKDGI--VIGRGVT-AYGGCPHAEV 57
            ++  D + ++  AL  +       STN SV  ++V      ++  G T    G  HAE 
Sbjct: 12  SINPGDHKAYLQYALSLAARSPPK-STNYSVGAVLVNPNTNAIVSTGYTLELEGNTHAEQ 70

Query: 58  Q-----ALEEAGEEARGATA--------YVTLEPCSHY-GRSPPCAQFIIECG--IRRVV 101
                 A   +  E   ATA        Y T+EPCS     + PC + I+     I  V 
Sbjct: 71  CCFMKFAAAHSVTEEELATAVQSPPLILYATMEPCSERLSGNLPCVKRILRLKHLITAVY 130

Query: 102 VCVDDPDVRVSGRGLQ-WLSQKGIIVDRMMESE 133
           V V +P+  VS    +  L   GI    +   E
Sbjct: 131 VGVQEPEKFVSDNTGRGALQAAGIEFVHIGGLE 163


>gi|220934212|ref|YP_002513111.1| tRNA-specific adenosine deaminase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995522|gb|ACL72124.1| tRNA-specific adenosine deaminase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 162

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 51/158 (32%), Gaps = 21/158 (13%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCPHAEVQALE 61
           S  D  +M              +    V  ++V+DG ++G G         P A  +   
Sbjct: 9   SDEDQHWMRH--ALELAARAEAAGEVPVGAVLVRDGELLGEGCNGPIAAHDPTAHAEIAA 66

Query: 62  EAGEEAR-------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
                AR       GAT YVTLEPC      P C   +I   + R+V    DP     G 
Sbjct: 67  LRAAAARVGNYRLPGATLYVTLEPC------PMCVGAMIHARVARLVYGAADPKTGAVGG 120

Query: 115 GLQWLSQ----KGIIVDRMMESEGKIFLHAYLTRQVEK 148
            L  L        I V   + +E          R   +
Sbjct: 121 ALDLLGHPSHNHRIEVTGGVLAETCAEQLRAFFRTRRQ 158


>gi|257877626|ref|ZP_05657279.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
 gi|257811792|gb|EEV40612.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
          Length = 177

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 4/86 (4%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           D    ++ L      ++ V GG ++    + + L+D   +  + + +GEG      E G 
Sbjct: 92  DPVAFVSALKQEE--NVWVVGGGSLLKPLLEADLIDEWFIQIAPVFLGEG--KRLFEPGE 147

Query: 334 LEKNFMCVRRDYFGSDVCLEYIGKNL 359
             +    V     G    L ++ K++
Sbjct: 148 YSRRLTFVETKQMGELTELHFVRKSV 173


>gi|302205290|gb|ADL09632.1| Cytosine/adenosine deaminase [Corynebacterium pseudotuberculosis
           C231]
          Length = 182

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 53/149 (35%), Gaps = 27/149 (18%)

Query: 11  MSAALRFSRWHVGLTST-NPSVACLIV-KDGIVIGRGVTAYGGCP----HAEVQALEEA- 63
           M  A+  ++     T   +  V  +I   DG V+GRGV           HAE+ A+ EA 
Sbjct: 40  MRQAIIQAQ----ATPPGDIPVGAVIFGPDGEVLGRGVNRREADRDPLGHAEIMAIREAV 95

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                G      T  VTLEPC        CA  ++   I R+     +P     G     
Sbjct: 96  ANHDDGWRLTDCTLAVTLEPC------TMCAGALVGARIGRIFFGAYEPKTGACGSAFDV 149

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYL 142
           +    +     +   +++ E    +  + 
Sbjct: 150 VRDPAVLHVPEVRGGILQDECAALVTHFF 178


>gi|260890091|ref|ZP_05901354.1| hypothetical protein GCWU000323_01253 [Leptotrichia hofstadii
           F0254]
 gi|260860114|gb|EEX74614.1| putative deoxycytidylate deaminase [Leptotrichia hofstadii F0254]
          Length = 161

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 60/160 (37%), Gaps = 32/160 (20%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVA-CLIVKDGIVIGRGV----------------- 46
           S+D  FM  A       +     +  V  C+I +D  +IG G                  
Sbjct: 9   SWDEYFMGIAF---LSGMRSKDPSTQVGACIIDEDKKIIGIGYNGFPMGSSDDSMPWGKE 65

Query: 47  -----TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                T Y    HAE+ A+  + +  +  T YVT  PC+       CA+ I++ GI++V+
Sbjct: 66  GEFLETKYPYVVHAELNAILNSIKSLKKCTIYVTHFPCNE------CAKAIVQSGIKKVI 119

Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
              D      S +  + + +   +    +E + K     +
Sbjct: 120 YFSDKHKSLDSTKASKRIFENARVETVHLEIDKKAINIQF 159


>gi|307565320|ref|ZP_07627813.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella amnii CRIS 21A-A]
 gi|307345989|gb|EFN91333.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Prevotella amnii CRIS 21A-A]
          Length = 145

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 53/143 (37%), Gaps = 38/143 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           S D R++  A  ++            V  L+VK+ ++I  G     G P           
Sbjct: 7   SLDCRYLRMARIWAENSYCQRRK---VGTLVVKNKMIISDGY---NGTPSGFENVCEDSN 60

Query: 54  --------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  A   L  +G  + GAT YVT  PC        CA+ II+ GI+R+V 
Sbjct: 61  NVTKPYVLHAEANAITKLARSGNNSEGATIYVTDAPCIE------CAKLIIQAGIKRIVY 114

Query: 103 CVDDPDVRVSGRGLQWLSQKGII 125
                       G+  L +  I 
Sbjct: 115 AEKYRLT----DGIDLLQRANIE 133


>gi|184155085|ref|YP_001843425.1| competence protein [Lactobacillus fermentum IFO 3956]
 gi|227514789|ref|ZP_03944838.1| competence protein ComEB [Lactobacillus fermentum ATCC 14931]
 gi|260663629|ref|ZP_05864518.1| ComE operon protein 2 [Lactobacillus fermentum 28-3-CHN]
 gi|183226429|dbj|BAG26945.1| competence protein [Lactobacillus fermentum IFO 3956]
 gi|227086837|gb|EEI22149.1| competence protein ComEB [Lactobacillus fermentum ATCC 14931]
 gi|260551855|gb|EEX24970.1| ComE operon protein 2 [Lactobacillus fermentum 28-3-CHN]
          Length = 159

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 31/136 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            +D  FM  A   +      T T  SV  ++V+D  +IG G                   
Sbjct: 6   DWDQYFMVQAALLASRS---TCTRLSVGAVLVRDKRIIGSGYNGAVAGDEHCIDVGCYLR 62

Query: 54  --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE+ AL +    G    GA  YVT  PC        C + +++ GI ++  
Sbjct: 63  DGHCVRTIHAEMNALLQCAKFGTSTDGAMVYVTDFPCLQ------CTKSLLQAGITQINY 116

Query: 103 CVDDPDVRVSGRGLQW 118
             +  +   + + ++ 
Sbjct: 117 LRNYHNDDYAMKLIEL 132


>gi|302384784|ref|YP_003820606.1| dCMP deaminase [Clostridium saccharolyticum WM1]
 gi|302195412|gb|ADL02983.1| dCMP deaminase [Clostridium saccharolyticum WM1]
          Length = 164

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 37/152 (24%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT---------------- 47
           ++D  FM  A   +         +  V   IV +D  ++  G                  
Sbjct: 10  TWDEYFMGVA---ALSSKRSKDPSTQVGACIVSQDNKILSMGYNGFPMGCSDDEFPWDRE 66

Query: 48  ---------AYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                     Y    H+E+ A+    G    G+  YVTL PC+       CA+ II+ GI
Sbjct: 67  NEQEDPYNAKYFYSTHSELNAILNYRGGSLEGSKLYVTLFPCNE------CAKAIIQAGI 120

Query: 98  RRVVVCVDDPD-VRVSGRGLQWLSQKGIIVDR 128
           + +V   D  +         + L+  G+   +
Sbjct: 121 KTIVYGSDKYEGTPAVNASKRMLNAAGVRYYQ 152


>gi|227551900|ref|ZP_03981949.1| dihydrofolate reductase family protein [Enterococcus faecium
           TX1330]
 gi|257886937|ref|ZP_05666590.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257895509|ref|ZP_05675162.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|257898124|ref|ZP_05677777.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|227178972|gb|EEI59944.1| dihydrofolate reductase family protein [Enterococcus faecium
           TX1330]
 gi|257822991|gb|EEV49923.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257832074|gb|EEV58495.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|257836036|gb|EEV61110.1| conserved hypothetical protein [Enterococcus faecium Com15]
          Length = 173

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVE 293
           KT   A   + TE   P         N  +   D      +    L  L       + V 
Sbjct: 52  KTYQEAKKYLETEAIYPEKKNFVFSTNAQLQLPDAEVVHEEPVAFLKNLQMTEGKDIWVV 111

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           GG  +    +  +++D   +  + +++G+ GIP   ++G  E  F  +    FG  + L 
Sbjct: 112 GGGRLIKPLVEHQMIDEWYIQIAPVLLGD-GIP-LFQKGTYEARFELLDTTRFGEFIELH 169

Query: 354 YIGK 357
           YI K
Sbjct: 170 YIRK 173


>gi|227524104|ref|ZP_03954153.1| competence protein ComEB [Lactobacillus hilgardii ATCC 8290]
 gi|227088735|gb|EEI24047.1| competence protein ComEB [Lactobacillus hilgardii ATCC 8290]
          Length = 167

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 31/135 (22%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
           +D  FM  A+  +      T    SV  +IV+D  +I  G                    
Sbjct: 16  WDQYFMMQAVLLASRS---TCERLSVGAVIVRDKRIIAGGYNGSVVGDDHCIDVGCYLVD 72

Query: 54  -------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE+ A+ +    GE    A  YVT  PC        C + +++ GIRR+   
Sbjct: 73  GHCVRTIHAEMNAILQCAKFGESTDNAEIYVTDFPCLQ------CTKMLLQAGIRRINYL 126

Query: 104 VDDPDVRVSGRGLQW 118
            +  +   + + ++ 
Sbjct: 127 RNYHNDEYAQKLIRL 141


>gi|58389825|ref|XP_317305.2| AGAP008158-PA [Anopheles gambiae str. PEST]
 gi|55237525|gb|EAA12688.2| AGAP008158-PA [Anopheles gambiae str. PEST]
          Length = 180

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 51/157 (32%), Gaps = 34/157 (21%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--------------- 53
           FM+ A   ++        +  V   IV  D  ++G G   +                   
Sbjct: 33  FMAMAFLAAKRSK---DPSTQVGACIVNEDNRIVGIGYNGFPKGCSDDEFPWSKTSDNPL 89

Query: 54  --------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                   HAEV A L +   + R  T YV L PC+       CA+ II+  IR VV   
Sbjct: 90  ETKYLYVCHAEVNAILNKNSTDVRNCTMYVALFPCNE------CAKIIIQSAIREVVYMS 143

Query: 105 DDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
           D    +      + +     +     +   K  +  +
Sbjct: 144 DKHAHKEHTIAAKRMFDAAGVRYTQYKPPHKQIVIDF 180


>gi|50954049|ref|YP_061337.1| cytosine/adenosine deaminase [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50950531|gb|AAT88232.1| cytosine/adenosine deaminase [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 143

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 48/128 (37%), Gaps = 21/128 (16%)

Query: 30  SVACLIVKDGI-VIGRGVTAY----GGCPHAEVQALEEAGEE-----ARGATAYVTLEPC 79
            VA L+V  G  VIG G            HAEV AL EA          G T  VTLEPC
Sbjct: 18  PVAALVVDAGERVIGTGRNERELLRDPTAHAEVLALREAASSRADWNLEGCTLVVTLEPC 77

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEG 134
           +       CA  I+   +  VV    D     +G     L  + +     +   ++  E 
Sbjct: 78  AM------CAGAILGARVTTVVFGAWDEKAGAAGSLYDILRDRRLPARSEVYAGVLAEEC 131

Query: 135 KIFLHAYL 142
           +  L A+ 
Sbjct: 132 RALLLAFF 139


>gi|332244691|ref|XP_003271507.1| PREDICTED: deoxycytidylate deaminase-like isoform 2 [Nomascus
           leucogenys]
 gi|332244693|ref|XP_003271508.1| PREDICTED: deoxycytidylate deaminase-like isoform 3 [Nomascus
           leucogenys]
 gi|332244695|ref|XP_003271509.1| PREDICTED: deoxycytidylate deaminase-like isoform 4 [Nomascus
           leucogenys]
          Length = 178

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 51/146 (34%), Gaps = 35/146 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        N  V   IV  +  ++G G                  
Sbjct: 14  EWPEYFMAVAFLSAQRSK---DPNSQVGACIVNSENKIVGIGYNGMPNGCSDDLLPWRRT 70

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G + YV L PC+       CA+ II+ GI+ 
Sbjct: 71  AKNKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNE------CAKLIIQAGIKE 124

Query: 100 VVVCVDDPDVRVSGRGLQWLSQ-KGI 124
           V+   D           + L    G+
Sbjct: 125 VIFMSDKYHDSDEATAARLLFDMAGV 150


>gi|332244689|ref|XP_003271506.1| PREDICTED: deoxycytidylate deaminase-like isoform 1 [Nomascus
           leucogenys]
 gi|332244697|ref|XP_003271510.1| PREDICTED: deoxycytidylate deaminase-like isoform 5 [Nomascus
           leucogenys]
          Length = 189

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 51/146 (34%), Gaps = 35/146 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        N  V   IV  +  ++G G                  
Sbjct: 25  EWPEYFMAVAFLSAQRSK---DPNSQVGACIVNSENKIVGIGYNGMPNGCSDDLLPWRRT 81

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G + YV L PC+       CA+ II+ GI+ 
Sbjct: 82  AKNKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNE------CAKLIIQAGIKE 135

Query: 100 VVVCVDDPDVRVSGRGLQWLSQ-KGI 124
           V+   D           + L    G+
Sbjct: 136 VIFMSDKYHDSDEATAARLLFDMAGV 161


>gi|330470612|ref|YP_004408355.1| CMP/dCMP deaminase [Verrucosispora maris AB-18-032]
 gi|328813583|gb|AEB47755.1| CMP/dCMP deaminase [Verrucosispora maris AB-18-032]
          Length = 200

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 41/130 (31%), Gaps = 21/130 (16%)

Query: 8   ARFMSAALRFSRWHVGLTST-----NPSVACLIV-KDGIVIGRGVTAY----GGCPHAEV 57
             +M  AL  +     +        +  V  ++   DG  +  G            HAEV
Sbjct: 51  ELWMRRALEVAVTGPAVADPSGQADDVPVGAVLYGPDGDELAIGRNERELTGDPTAHAEV 110

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL    E        G    VTLEPC        CA  ++   +  VV    +P    +
Sbjct: 111 LALRRGAERLGRWRLDGCILVVTLEPC------TMCAGALVLSRVSTVVFGAWEPKTGAA 164

Query: 113 GRGLQWLSQK 122
           G     L  +
Sbjct: 165 GSLWDVLRDR 174


>gi|297293741|ref|XP_001092239.2| PREDICTED: deoxycytidylate deaminase isoform 4 [Macaca mulatta]
          Length = 189

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 51/146 (34%), Gaps = 35/146 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        N  V   IV  +  ++G G                  
Sbjct: 25  EWPEYFMAVAFLSAQRSK---DPNSQVGACIVNSENKIVGIGYNGMPNGCSDDLLPWSRT 81

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G + YV L PC+       CA+ II+ GI+ 
Sbjct: 82  AENKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNE------CAKLIIQAGIKE 135

Query: 100 VVVCVDDPDVRVSGRGLQWLSQ-KGI 124
           V+   D           + L    G+
Sbjct: 136 VIFMSDKYHDSDEATAARLLFDMAGV 161


>gi|157829120|ref|YP_001495362.1| cytosine deaminase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933844|ref|YP_001650633.1| tRNA-specific adenosine deaminase [Rickettsia rickettsii str. Iowa]
 gi|157801601|gb|ABV76854.1| cytosine deaminase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908931|gb|ABY73227.1| tRNA-specific adenosine deaminase [Rickettsia rickettsii str. Iowa]
          Length = 168

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 21/130 (16%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTN-PSVACLIVK--DGIVIGRGVT----AYGGCPHAE 56
           ++F+  FM  AL+ ++        N   V  ++V   +  +I               HAE
Sbjct: 9   ANFNNFFMEQALKQAKIAF---DKNEVPVGAVVVDRLNQKIIASTHNNTEEKNNALYHAE 65

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ EA      +       YVTLEPC+       CA  I    ++R+     D     
Sbjct: 66  IIAINEACNLISSKNLNDYDIYVTLEPCAM------CAAAIAHSRLKRLFYGASDSKHGA 119

Query: 112 SGRGLQWLSQ 121
               L++ + 
Sbjct: 120 IESNLRYFNS 129


>gi|109076283|ref|XP_001092119.1| PREDICTED: deoxycytidylate deaminase isoform 3 [Macaca mulatta]
 gi|297293743|ref|XP_002804315.1| PREDICTED: deoxycytidylate deaminase [Macaca mulatta]
          Length = 178

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 51/146 (34%), Gaps = 35/146 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        N  V   IV  +  ++G G                  
Sbjct: 14  EWPEYFMAVAFLSAQRSK---DPNSQVGACIVNSENKIVGIGYNGMPNGCSDDLLPWSRT 70

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G + YV L PC+       CA+ II+ GI+ 
Sbjct: 71  AENKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNE------CAKLIIQAGIKE 124

Query: 100 VVVCVDDPDVRVSGRGLQWLSQ-KGI 124
           V+   D           + L    G+
Sbjct: 125 VIFMSDKYHDSDEATAARLLFDMAGV 150


>gi|67459711|ref|YP_247335.1| cytosine deaminase [Rickettsia felis URRWXCal2]
 gi|67005244|gb|AAY62170.1| Cytosine deaminase [Rickettsia felis URRWXCal2]
          Length = 159

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 46/129 (35%), Gaps = 19/129 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVT----AYGGCPHAEV 57
           + F+  FM  AL+ +   +        V  +IV   +  +I               HAE+
Sbjct: 9   TDFNNFFMEQALKQA--GIAFDKNEVPVGAVIVDRLNQKIIVSSHNNTEEKNNALYHAEI 66

Query: 58  QALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+ EA      +       YVTLEPC+       CA  I    ++R+     D      
Sbjct: 67  IAINEACNLISSKNLNDYDIYVTLEPCAM------CAAAIAHSRLKRLFYGASDSKHGAV 120

Query: 113 GRGLQWLSQ 121
              L++ + 
Sbjct: 121 ESNLRYFNS 129


>gi|297674743|ref|XP_002815371.1| PREDICTED: deoxycytidylate deaminase-like isoform 1 [Pongo abelii]
 gi|297674745|ref|XP_002815372.1| PREDICTED: deoxycytidylate deaminase-like isoform 2 [Pongo abelii]
 gi|297674747|ref|XP_002815373.1| PREDICTED: deoxycytidylate deaminase-like isoform 3 [Pongo abelii]
 gi|62286511|sp|Q5RC69|DCTD_PONAB RecName: Full=Deoxycytidylate deaminase; AltName: Full=dCMP
           deaminase
 gi|55727775|emb|CAH90638.1| hypothetical protein [Pongo abelii]
          Length = 178

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 51/146 (34%), Gaps = 35/146 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        N  V   IV  +  ++G G                  
Sbjct: 14  EWPEYFMAVAFLSAQRSK---DPNSQVGACIVNSENKIVGIGYNGMPNGCSDDQLPWRRT 70

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G + YV L PC+       CA+ II+ GI+ 
Sbjct: 71  AKNKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNE------CAKLIIQAGIKE 124

Query: 100 VVVCVDDPDVRVSGRGLQWLSQ-KGI 124
           V+   D           + L    G+
Sbjct: 125 VIFMSDKYHDSDEATAARLLFDMAGV 150


>gi|196012527|ref|XP_002116126.1| hypothetical protein TRIADDRAFT_50803 [Trichoplax adhaerens]
 gi|190581449|gb|EDV21526.1| hypothetical protein TRIADDRAFT_50803 [Trichoplax adhaerens]
          Length = 157

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 54/148 (36%), Gaps = 35/148 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
           S++  FM+ A   S+        N  V   IV ++  ++G G                  
Sbjct: 18  SWEEYFMAVAFLSSQRSK---DPNTQVGACIVNQENKIVGIGYNGMPNGCNDDALPWARE 74

Query: 47  ------TAYGGCPHAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+      + +G   YV L PC+       CA+ II+ GI+ 
Sbjct: 75  ASNALDTKYPYVCHAEMNAILNKNSFDLKGCIIYVALFPCNE------CAKLIIQSGIKE 128

Query: 100 VVVCVD-DPDVRVSGRGLQWLSQKGIIV 126
           VV   D   D   S    + L   G+  
Sbjct: 129 VVFVSDKYHDTAASTASRRLLDLAGVKY 156


>gi|284801870|ref|YP_003413735.1| hypothetical protein LM5578_1625 [Listeria monocytogenes 08-5578]
 gi|284995012|ref|YP_003416780.1| hypothetical protein LM5923_1577 [Listeria monocytogenes 08-5923]
 gi|284057432|gb|ADB68373.1| hypothetical protein LM5578_1625 [Listeria monocytogenes 08-5578]
 gi|284060479|gb|ADB71418.1| hypothetical protein LM5923_1577 [Listeria monocytogenes 08-5923]
          Length = 186

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 40/167 (23%)

Query: 1   MPVSSFDARFMSAALRFSRWHV---GLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP--- 53
           M   ++D  FM      ++ H+     T T   V   IV+D  +I  G      G     
Sbjct: 1   MQRIAWDQFFM------AQSHLISSRSTCTRLMVGATIVRDKRIIAGGYNGSIAGGDHCA 54

Query: 54  ---------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                          HAE+ A+ +    G     A  YVT  PC        C + II+ 
Sbjct: 55  EHGCYVVDGHCIRTIHAEMNAILQCAKFGATTDKAELYVTHFPCL------ACTKSIIQA 108

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
           GI++V    D  +   +   L+  +  G+ + ++   E  + ++ + 
Sbjct: 109 GIKKVYFAKDYKNHPYA---LELFNIAGVELQKVEFDESVLQVNNWN 152


>gi|300361667|ref|ZP_07057844.1| riboflavin biosynthesis protein ribBA [Lactobacillus gasseri
          JV-V03]
 gi|300354286|gb|EFJ70157.1| riboflavin biosynthesis protein ribBA [Lactobacillus gasseri
          JV-V03]
          Length = 96

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 5  SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIV 41
            D  +M+ AL+ ++     T  NP V  +IVK+  +
Sbjct: 2  EKDQYYMNLALQEAKKGRFQTWKNPLVGAVIVKELKI 38


>gi|319440385|ref|ZP_07989541.1| dihydrofolate reductase [Corynebacterium variabile DSM 44702]
          Length = 158

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 49/133 (36%), Gaps = 13/133 (9%)

Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTIL 282
           D       ++  +      PVI+ T  D P        +  ++ + D    D   +L   
Sbjct: 33  DQDLITQPEAWTVTFGTR-PVIVFTSRDLPA------PQGADVRFADGIVGDNADMLQDA 85

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
            G G  ++ V GG  +A  F+++ L+D I L+ S + + +G   S             V+
Sbjct: 86  AGDG--TVWVMGGGDLAGQFLDAGLLDEITLHLSPVFLAKG--KSLFPRDLASDRLTLVQ 141

Query: 343 RDYFGSDVCLEYI 355
               G  +   + 
Sbjct: 142 ARQIGQFIEATWR 154


>gi|309800001|ref|ZP_07694201.1| ComE operon protein 2 [Streptococcus infantis SK1302]
 gi|308116400|gb|EFO53876.1| ComE operon protein 2 [Streptococcus infantis SK1302]
          Length = 155

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 54/156 (34%), Gaps = 33/156 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           ++D  F + AL  +      T     V  ++VKD  VI  G                   
Sbjct: 7   AWDEYFAAQALLIANRS---TCKRAKVGAVLVKDNKVISTGYNGSVSGTEHCIDHDCLVI 63

Query: 54  --------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                   HAEV A+ +  E    +G TAYVT  PC +      C + +++ G  RVV  
Sbjct: 64  EGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLN------CTKQLLQVGCERVVYI 117

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
                 R+         +KG  +  +     +  L 
Sbjct: 118 NQY---RMDDYAQYLYREKGTELTHLPLETVQAALQ 150


>gi|228960596|ref|ZP_04122243.1| ComE operon protein 2 [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229048033|ref|ZP_04193608.1| ComE operon protein 2 [Bacillus cereus AH676]
 gi|229111800|ref|ZP_04241346.1| ComE operon protein 2 [Bacillus cereus Rock1-15]
 gi|229146898|ref|ZP_04275262.1| ComE operon protein 2 [Bacillus cereus BDRD-ST24]
 gi|228636497|gb|EEK92963.1| ComE operon protein 2 [Bacillus cereus BDRD-ST24]
 gi|228671556|gb|EEL26854.1| ComE operon protein 2 [Bacillus cereus Rock1-15]
 gi|228723277|gb|EEL74647.1| ComE operon protein 2 [Bacillus cereus AH676]
 gi|228799075|gb|EEM46045.1| ComE operon protein 2 [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 188

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 55/166 (33%), Gaps = 34/166 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M   S+D  FM+ +   S      T T  +V   IV+D  +I  G      GG       
Sbjct: 4   MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +   A  YVT  PC        C + II+ GI 
Sbjct: 61  CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQ------CCKAIIQSGIT 114

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            V    D  +   +   ++   Q  + V  +        L      
Sbjct: 115 AVYYAQDYKNHPYA---IELFEQANVTVKHVPLEYDIAALEDQKRY 157


>gi|229129607|ref|ZP_04258575.1| ComE operon protein 2 [Bacillus cereus BDRD-Cer4]
 gi|229152530|ref|ZP_04280720.1| ComE operon protein 2 [Bacillus cereus m1550]
 gi|228630896|gb|EEK87535.1| ComE operon protein 2 [Bacillus cereus m1550]
 gi|228653724|gb|EEL09594.1| ComE operon protein 2 [Bacillus cereus BDRD-Cer4]
          Length = 188

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 55/166 (33%), Gaps = 34/166 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M   S+D  FM+ +   S      T T  +V   IV+D  +I  G      GG       
Sbjct: 4   MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +   A  YVT  PC        C + II+ GI 
Sbjct: 61  CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQ------CCKAIIQSGIT 114

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            V    D  +   +   ++   Q  + V  +        L      
Sbjct: 115 AVYYAQDYKNHPYA---IELFEQANVTVKHVPLEYDIAALEDQKRY 157


>gi|153008613|ref|YP_001369828.1| zinc-binding CMP/dCMP deaminase [Ochrobactrum anthropi ATCC 49188]
 gi|151560501|gb|ABS13999.1| CMP/dCMP deaminase zinc-binding [Ochrobactrum anthropi ATCC 49188]
          Length = 156

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 41/116 (35%), Gaps = 25/116 (21%)

Query: 5   SFDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
           S D  ++  A+R +        G          ++VK G VI  GV           HAE
Sbjct: 2   SNDRTYLDQAIRLAFDNVEQG-GR-----PFGAVVVKGGKVIATGVNRMQADCDPTAHAE 55

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           + AL  AG+        G   Y + +PC      P C   +   GI ++     + 
Sbjct: 56  LLALRAAGKTLQSPRLDGCEVYASGQPC------PMCFAAMRMAGIEKIRFAYSNE 105


>gi|30022404|ref|NP_834035.1| ComE operon protein 2 [Bacillus cereus ATCC 14579]
 gi|29897962|gb|AAP11236.1| ComE operon protein 2 [Bacillus cereus ATCC 14579]
          Length = 182

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 55/166 (33%), Gaps = 34/166 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M   S+D  FM+ +   S      T T  +V   IV+D  +I  G      GG       
Sbjct: 1   MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +   A  YVT  PC        C + II+ GI 
Sbjct: 58  CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQ------CCKAIIQSGIT 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            V    D  +   +   ++   Q  + V  +        L      
Sbjct: 112 AVYYAQDYKNHPYA---IELFEQANVTVKHVPLEYDIAALEDQKRY 154


>gi|323702624|ref|ZP_08114286.1| CMP/dCMP deaminase zinc-binding protein [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532443|gb|EGB22320.1| CMP/dCMP deaminase zinc-binding protein [Desulfotomaculum
           nigrificans DSM 574]
          Length = 149

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 48/134 (35%), Gaps = 39/134 (29%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D  FM      +     L      V  +I+KD  ++  G                   
Sbjct: 4   SWDEYFMEITRVVATRSTCLRRK---VGAVIIKDKRILTTGYNGAPAGLAHCLEIGCLRE 60

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  AL +A   G   +G+T YVT +PC        CA+ I+ 
Sbjct: 61  QMGIPSGQRHELCRGLHAEQNALLQAAVHGIAIQGSTIYVTHQPC------VLCAKMIVN 114

Query: 95  CGIRRVVVCVDDPD 108
            GI++VV   D PD
Sbjct: 115 AGIKKVVFAGDYPD 128


>gi|227833262|ref|YP_002834969.1| riboflavin biosynthesis protein ribD [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262184246|ref|ZP_06043667.1| riboflavin biosynthesis protein ribD [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227454278|gb|ACP33031.1| riboflavin biosynthesis protein ribD [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 216

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 63/179 (35%), Gaps = 23/179 (12%)

Query: 185 LLRAQSDAILVGIGTVLADD--PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
            LR  +D  ++G  TV +++  P  + RL           +L        D    +  + 
Sbjct: 50  ALREWADIAVIGSATVKSEEYGPSTSTRLA----------VLSHSL----DFAGFEEFIA 95

Query: 243 APVIIVT--ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
           +  I++T  E      A         +I      + + +  L  +G   +  EGG +V  
Sbjct: 96  SGPIVLTPEERASSPEARRLANAGAEVISTGTGTMSEAIAALRAQGARRISCEGGPSVYS 155

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY---FGSDVCLEYIG 356
           +FI   L+D + L     +     +  P+ +G      + +  +      S V L Y  
Sbjct: 156 AFIAEGLMDKLYLTLDPHL--SPSVEKPVVDGAATSPALKLELENVTAVDSTVFLRYRR 212


>gi|163853270|ref|YP_001641313.1| CMP/dCMP deaminase zinc-binding [Methylobacterium extorquens PA1]
 gi|163664875|gb|ABY32242.1| CMP/dCMP deaminase zinc-binding [Methylobacterium extorquens PA1]
          Length = 147

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 42/127 (33%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            V   +V+DG V+        T      HAE+ A+  A      E   G   YVTLEPC 
Sbjct: 22  PVGAAVVRDGTVLAVAGNRPRTLSDPTAHAEILAIRAACAALRDERLTGCDLYVTLEPC- 80

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPD---VRVSGRGLQW--LSQKGIIVDRMMESEGK 135
                P CA  I    IRR+     DP    V    R            +     E E  
Sbjct: 81  -----PMCAGAIAFARIRRLYYAASDPKGGGVEHGPRVFNQPTCHHAPEVYSGFREGEAA 135

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 136 GLLREFF 142


>gi|296504819|ref|YP_003666519.1| ComE operon protein 2 [Bacillus thuringiensis BMB171]
 gi|296325871|gb|ADH08799.1| ComE operon protein 2 [Bacillus thuringiensis BMB171]
          Length = 185

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 55/166 (33%), Gaps = 34/166 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M   S+D  FM+ +   S      T T  +V   IV+D  +I  G      GG       
Sbjct: 1   MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +   A  YVT  PC        C + II+ GI 
Sbjct: 58  CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQ------CCKAIIQSGIT 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            V    D  +   +   ++   Q  + V  +        L      
Sbjct: 112 AVYYAQDYKNHPYA---IELFEQANVTVKHVPLEYDIAALEDQKRY 154


>gi|118397|sp|P00814|DCTD_BPT2 RecName: Full=Deoxycytidylate deaminase; AltName: Full=dCMP
           deaminase
          Length = 188

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 43/159 (27%), Gaps = 68/159 (42%)

Query: 31  VACLIVKDGIVIGRGV-------------------------------------------- 46
           V  +I K+G +I  G                                             
Sbjct: 24  VGAVIEKNGRIISTGYNGSPAGGVNCDNYAAIEGWLLNKPKHTIIQGHKPECVSFGTSDR 83

Query: 47  ------TAYGGCP-------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE+ A+      G    GAT YVTL PC      P CA+
Sbjct: 84  FVLAKEHRSAHSEWSSKNEIHAELNAILFAARNGSSIEGATMYVTLSPC------PDCAK 137

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            I + GI+++V C               L   GI V  +
Sbjct: 138 AIAQSGIKKLVYCETYDK--NKPGWDDILRNAGIEVFNV 174


>gi|209732624|gb|ACI67181.1| Deoxycytidylate deaminase [Salmo salar]
          Length = 195

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 56/150 (37%), Gaps = 35/150 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
            +   FM+ A   ++        +  V   IV ++  ++G G                  
Sbjct: 31  EWPEYFMAVAFLSAQRSK---DPSSQVGACIVNQENKIVGIGYNGMPNGCDDDLLPWARS 87

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G + YV L PC+       CA+ II+ GI+ 
Sbjct: 88  ADDRLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNE------CAKLIIQAGIKD 141

Query: 100 VVVCVD-DPDVRVSGRGLQWLSQKGIIVDR 128
           VV   D   D+       + L+  GI   +
Sbjct: 142 VVYLSDKYHDIPEMTASRRLLNLAGIQYKQ 171


>gi|88608086|ref|YP_505986.1| cytidine/deoxycytidylate deaminase family protein [Neorickettsia
           sennetsu str. Miyayama]
 gi|88600255|gb|ABD45723.1| cytidine/deoxycytidylate deaminase family protein [Neorickettsia
           sennetsu str. Miyayama]
          Length = 144

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 50/149 (33%), Gaps = 22/149 (14%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALE 61
            D +FM  A+  +R           V  ++V+ G VI     R         HAE+  + 
Sbjct: 1   MDKKFMELAMSVARQSDCEV----PVGAVLVRQGAVIASSGNRVFRDSDPTAHAEMFVIR 56

Query: 62  EAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           EA +            YVTLEPC      P C   +    +  +     D        G 
Sbjct: 57  EAIQRLGVKFLVDFELYVTLEPC------PMCMYAMSLSRVGTLCFAAYDEKRGAISNGC 110

Query: 117 Q---WLSQKGIIVDRMMESEGKIFLHAYL 142
                     II + +ME E K  L ++ 
Sbjct: 111 LGTGTYFHVPIIYEGLMEDEAKELLSSFF 139


>gi|326492115|dbj|BAJ98282.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 186

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 46/142 (32%), Gaps = 21/142 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-----AYGGCPHAEV 57
           V   D +F+S A+  +   V      P    ++V++  VI  G             HAEV
Sbjct: 27  VQDRDHKFLSKAVEEAYKGVDCGHGGP-FGAVVVRNDEVI-VGCHNMVLNNTDPTAHAEV 84

Query: 58  QALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV--- 109
            A+ EA ++           Y + EPC      P C   +    I+R+V           
Sbjct: 85  TAIREACKKLGKIELSDCEMYASCEPC------PMCFGAVHLSRIKRLVYGAKAEAAIAI 138

Query: 110 RVSGRGLQWLSQKGIIVDRMME 131
                    L   G      ME
Sbjct: 139 GFDDFIADALRGTGFYQKANME 160


>gi|266619532|ref|ZP_06112467.1| putative deoxycytidylate deaminase [Clostridium hathewayi DSM
           13479]
 gi|288868943|gb|EFD01242.1| putative deoxycytidylate deaminase [Clostridium hathewayi DSM
           13479]
          Length = 166

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 37/152 (24%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
           ++D  FM  A+   +        +  V   IV +D  ++  G                  
Sbjct: 12  TWDEYFMGVAMLSGKRSK---DPSTQVGACIVSQDNKILSMGYNGFPKGCSDDEFPWGKE 68

Query: 47  TAYGG--------CPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                          H+E+ A+    G    G+  YVTL PC+       CA+ II+ GI
Sbjct: 69  HEKDDPYNAKYFYSTHSELNAILNYRGGSLEGSKLYVTLFPCNE------CAKAIIQSGI 122

Query: 98  RRVVVCVDDPD-VRVSGRGLQWLSQKGIIVDR 128
           + +V   D  D         + L+  G+   +
Sbjct: 123 KTIVYGSDKYDGTPAVNASKRMLNAAGVRYYQ 154


>gi|257867545|ref|ZP_05647198.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257873874|ref|ZP_05653527.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257801601|gb|EEV30531.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257808038|gb|EEV36860.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
          Length = 177

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 4/86 (4%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           D    ++ L      ++ V GG ++    + + L+D   +  + + +GEG      E G 
Sbjct: 92  DPVAFVSALKQEE--NVWVVGGGSLLKPLLEADLIDEWFIQIAPVFLGEG--KRLFEPGD 147

Query: 334 LEKNFMCVRRDYFGSDVCLEYIGKNL 359
             +    V     G    L ++ K++
Sbjct: 148 YSRRLTFVETKQMGELTELHFVRKSV 173


>gi|225352824|ref|ZP_03743847.1| hypothetical protein BIFPSEUDO_04457 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156335|gb|EEG69904.1| hypothetical protein BIFPSEUDO_04457 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 149

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 51/147 (34%), Gaps = 23/147 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGC----PHAEVQALEEA-- 63
           M  A+  +R           V  +++   G VIG G            HAEV+A+ +A  
Sbjct: 7   MELAIELAREAA--AEGEVPVGAVVLDAGGAVIGSGRNLREAHADPLAHAEVKAMTQAAR 64

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                     T  VTLEPC      P CA   ++  + R+V    D  +   G       
Sbjct: 65  SLGTWNLADCTLIVTLEPC------PMCAGACLQTHVGRIVFGAWDAKLGACGSIWDIPR 118

Query: 121 QKGI-----IVDRMMESEGKIFLHAYL 142
              +     ++  + ESE    +  + 
Sbjct: 119 DPHVGHVPEVIGGVRESECARLMTDFF 145


>gi|326942109|gb|AEA18005.1| ComE operon protein 2 [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 185

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 55/166 (33%), Gaps = 34/166 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M   S+D  FM+ +   S      T T  +V   IV+D  +I  G      GG       
Sbjct: 1   MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +   A  YVT  PC        C + II+ GI 
Sbjct: 58  CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQ------CCKAIIQSGIT 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            V    D  +   +   ++   Q  + V  +        L      
Sbjct: 112 AVYYAQDYKNHPYA---IELFEQANVTVKHVPLEYDIAALEEQKRY 154


>gi|239980910|ref|ZP_04703434.1| cytidine/deoxycytidine deaminase [Streptomyces albus J1074]
          Length = 168

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 18/122 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG----CPHAEVQALEEAGE 65
           M  AL  ++   G     P V  +++  DG ++               HAE+ AL  A  
Sbjct: 27  MRQALAEAQRA-GRGGDVP-VGAVVLDPDGRLLSAAHNEREADGDPTAHAEILALRRAAA 84

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                     T  VTLEPC        CA   ++  + RVV    D     +G     + 
Sbjct: 85  RSGRWRLTDCTLVVTLEPC------TMCAGAAVQSRVDRVVYGARDEKAGAAGSLWDVVR 138

Query: 121 QK 122
            +
Sbjct: 139 DR 140


>gi|228910163|ref|ZP_04073982.1| ComE operon protein 2 [Bacillus thuringiensis IBL 200]
 gi|228849446|gb|EEM94281.1| ComE operon protein 2 [Bacillus thuringiensis IBL 200]
          Length = 188

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 55/166 (33%), Gaps = 34/166 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M   S+D  FM+ +   S      T T  +V   IV+D  +I  G      GG       
Sbjct: 4   MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +   A  YVT  PC        C + II+ GI 
Sbjct: 61  CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQ------CCKAIIQSGIT 114

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            V    D  +   +   ++   Q  + V  +        L      
Sbjct: 115 AVYYAQDYKNHPYA---IELFEQANVTVKHVPLEYDIAALEEQKRY 157


>gi|228941493|ref|ZP_04104043.1| ComE operon protein 2 [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228974423|ref|ZP_04134991.1| ComE operon protein 2 [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228981018|ref|ZP_04141320.1| ComE operon protein 2 [Bacillus thuringiensis Bt407]
 gi|228778678|gb|EEM26943.1| ComE operon protein 2 [Bacillus thuringiensis Bt407]
 gi|228785259|gb|EEM33270.1| ComE operon protein 2 [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228818143|gb|EEM64218.1| ComE operon protein 2 [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 188

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 55/166 (33%), Gaps = 34/166 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M   S+D  FM+ +   S      T T  +V   IV+D  +I  G      GG       
Sbjct: 4   MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +   A  YVT  PC        C + II+ GI 
Sbjct: 61  CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQ------CCKAIIQSGIT 114

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            V    D  +   +   ++   Q  + V  +        L      
Sbjct: 115 AVYYAQDYKNHPYA---IELFEQANVTVKHVPLEYDIAALEEQKRY 157


>gi|229098798|ref|ZP_04229736.1| ComE operon protein 2 [Bacillus cereus Rock3-29]
 gi|228684642|gb|EEL38582.1| ComE operon protein 2 [Bacillus cereus Rock3-29]
          Length = 188

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 55/166 (33%), Gaps = 34/166 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M   S+D  FM+ +   S      T T  +V   IV+D  +I  G      GG       
Sbjct: 4   MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +   A  YVT  PC        C + II+ GI 
Sbjct: 61  CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQ------CCKAIIQSGIT 114

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            V    D  +   +   ++   Q  + V  +        L      
Sbjct: 115 AVYYAQDYKNHPYA---IELFEQANVTVKHVPLEYDIAALEEQKRY 157


>gi|229076001|ref|ZP_04208974.1| ComE operon protein 2 [Bacillus cereus Rock4-18]
 gi|229104958|ref|ZP_04235614.1| ComE operon protein 2 [Bacillus cereus Rock3-28]
 gi|228678452|gb|EEL32673.1| ComE operon protein 2 [Bacillus cereus Rock3-28]
 gi|228707113|gb|EEL59313.1| ComE operon protein 2 [Bacillus cereus Rock4-18]
          Length = 188

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 55/166 (33%), Gaps = 34/166 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M   S+D  FM+ +   S      T T  +V   IV+D  +I  G      GG       
Sbjct: 4   MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +   A  YVT  PC        C + II+ GI 
Sbjct: 61  CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQ------CCKAIIQSGIT 114

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            V    D  +   +   ++   Q  + V  +        L      
Sbjct: 115 AVYYAQDYKNHPYA---IELFEQANVTVKHVPLEYDIAALEEQKRY 157


>gi|229117824|ref|ZP_04247188.1| ComE operon protein 2 [Bacillus cereus Rock1-3]
 gi|228665621|gb|EEL21099.1| ComE operon protein 2 [Bacillus cereus Rock1-3]
          Length = 188

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 55/166 (33%), Gaps = 34/166 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M   S+D  FM+ +   S      T T  +V   IV+D  +I  G      GG       
Sbjct: 4   MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +   A  YVT  PC        C + II+ GI 
Sbjct: 61  CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQ------CCKAIIQSGIT 114

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            V    D  +   +   ++   Q  + V  +        L      
Sbjct: 115 AVYYAQDYKNHPYA---IELFEQANVTVKHVPLEYDIAALEEQKRY 157


>gi|228902852|ref|ZP_04066995.1| ComE operon protein 2 [Bacillus thuringiensis IBL 4222]
 gi|228954613|ref|ZP_04116637.1| ComE operon protein 2 [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|229071833|ref|ZP_04205046.1| ComE operon protein 2 [Bacillus cereus F65185]
 gi|229081590|ref|ZP_04214086.1| ComE operon protein 2 [Bacillus cereus Rock4-2]
 gi|229180604|ref|ZP_04307945.1| ComE operon protein 2 [Bacillus cereus 172560W]
 gi|229192539|ref|ZP_04319500.1| ComE operon protein 2 [Bacillus cereus ATCC 10876]
 gi|228590846|gb|EEK48704.1| ComE operon protein 2 [Bacillus cereus ATCC 10876]
 gi|228602847|gb|EEK60327.1| ComE operon protein 2 [Bacillus cereus 172560W]
 gi|228701696|gb|EEL54186.1| ComE operon protein 2 [Bacillus cereus Rock4-2]
 gi|228711263|gb|EEL63225.1| ComE operon protein 2 [Bacillus cereus F65185]
 gi|228805059|gb|EEM51654.1| ComE operon protein 2 [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228856776|gb|EEN01293.1| ComE operon protein 2 [Bacillus thuringiensis IBL 4222]
          Length = 188

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 55/166 (33%), Gaps = 34/166 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M   S+D  FM+ +   S      T T  +V   IV+D  +I  G      GG       
Sbjct: 4   MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +   A  YVT  PC        C + II+ GI 
Sbjct: 61  CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQ------CCKAIIQSGIT 114

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            V    D  +   +   ++   Q  + V  +        L      
Sbjct: 115 AVYYAQDYKNHPYA---IELFEQANVTVKHVPLEYDIAALEEQKRY 157


>gi|322698022|gb|EFY89796.1| DRAP deaminase [Metarhizium acridum CQMa 102]
          Length = 235

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 49/145 (33%), Gaps = 30/145 (20%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAY-------GGCPHAEVQAL 60
           FM  AL+ +R           V  ++V      ++  G +          G  HAE    
Sbjct: 73  FMEYALKQARLS-PAAHAEFCVGAVLVDSQVNRILSAGYSMELPSPVGDQGNTHAEQCCF 131

Query: 61  -----------EEAGEEARGA-----TAYVTLEPCSHY-GRSPPCAQFIIECG--IRRVV 101
                        A +  R         Y T+EPCSH    +  C + I++    IR V 
Sbjct: 132 IKVALAHNLPPAHAEDHIRHVLPARTVLYTTMEPCSHRLSGNTTCVERILKLKGVIRSVY 191

Query: 102 VCVDDPDVRVSGRG-LQWLSQKGII 125
           V +  P   V     ++ L + GI 
Sbjct: 192 VGIRQPSTFVRCNDGMKRLQEAGIE 216


>gi|294055974|ref|YP_003549632.1| CMP/dCMP deaminase zinc-binding protein [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615307|gb|ADE55462.1| CMP/dCMP deaminase zinc-binding protein [Coraliomargarita
           akajimensis DSM 45221]
          Length = 169

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 48/135 (35%), Gaps = 31/135 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVT------------- 47
           S+DA FM+ AL  +            V C+IV  G     +I  G               
Sbjct: 35  SWDAYFMATALLMASRSSCERL---HVGCVIVSGGRQKNRIIAAGYNGFLPGSPHQSRVR 91

Query: 48  --AYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  A+ +A   G    GAT Y+T  PC +      CA+ +   G+ R+  
Sbjct: 92  DGHEQATVHAEQNAIADAARRGVSLEGATVYITHYPCIN------CAKILASAGVARIKY 145

Query: 103 CVDDPDVRVSGRGLQ 117
             D  +  +    + 
Sbjct: 146 RNDYRNDPLVVELMA 160


>gi|218234584|ref|YP_002369136.1| ComE operon protein 2 [Bacillus cereus B4264]
 gi|218162541|gb|ACK62533.1| ComE operon protein 2 [Bacillus cereus B4264]
          Length = 185

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 55/166 (33%), Gaps = 34/166 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M   S+D  FM+ +   S      T T  +V   IV+D  +I  G      GG       
Sbjct: 1   MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +   A  YVT  PC        C + II+ GI 
Sbjct: 58  CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQ------CCKAIIQSGIT 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            V    D  +   +   ++   Q  + V  +        L      
Sbjct: 112 AVYYAQDYKNHPYA---IELFEQANVTVKHVPLEYDIAALEDQKRY 154


>gi|332025338|gb|EGI65506.1| Deoxycytidylate deaminase [Acromyrmex echinatior]
          Length = 182

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 55/171 (32%), Gaps = 36/171 (21%)

Query: 5   SFDARFMSAALRFSRWHV-GLTSTNPSVACLIVKDG-IVIGRGVTAYGGCP--------- 53
            +D  FM+ A   ++      T     V   IV +   ++G G                 
Sbjct: 10  DWDEYFMAIAFLSAKRSKDPCTQ----VGACIVNNDKRIVGIGYNGMPTGCSDDEFPWKR 65

Query: 54  --------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                         HAEV A L +     +  T YV L PC+       CA+ II+ GI+
Sbjct: 66  GLHTSLESKYLYVCHAEVNAVLNKNSSNVKDCTIYVALFPCNQ------CAKVIIQSGIK 119

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            V+   D    +V     + +     ++ R    + +     +      + 
Sbjct: 120 TVIYMSDKYAHKVETIAAKRMFDATGVIYRQYIPKNQKIEINFSDINWTEM 170


>gi|325571324|ref|ZP_08146824.1| RibD domain protein [Enterococcus casseliflavus ATCC 12755]
 gi|325155800|gb|EGC67996.1| RibD domain protein [Enterococcus casseliflavus ATCC 12755]
          Length = 177

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 4/86 (4%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           D    ++ L      ++ V GG ++    + + L+D   +  + + +GEG      E G 
Sbjct: 92  DPVAFVSALKQEE--NVWVVGGGSLLKPLLEADLIDEWFIQIAPVFLGEG--KRLFEPGD 147

Query: 334 LEKNFMCVRRDYFGSDVCLEYIGKNL 359
             +    V     G    L ++ K++
Sbjct: 148 YARRLTFVETKQMGELTELHFVRKSV 173


>gi|323142103|ref|ZP_08076951.1| ComE operon protein 2 family protein [Phascolarctobacterium sp. YIT
           12067]
 gi|322413490|gb|EFY04361.1| ComE operon protein 2 family protein [Phascolarctobacterium sp. YIT
           12067]
          Length = 152

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 51/154 (33%), Gaps = 43/154 (27%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------- 46
           +D  FM  A   S      T    SV  +IVK+  ++  G                    
Sbjct: 9   WDDYFMEIARVVSSRS---TCMRRSVGAVIVKNKQIVATGYNGTPKDLPHCEVTGCLREQ 65

Query: 47  -TAYGGCP-------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                G         HAE  A+ +A   G    G T Y T +PC        C + +I  
Sbjct: 66  LHVPSGQMHELCRGIHAEQNAVVQAAYHGVSVNGGTLYCTHQPC------VVCTKILINA 119

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           GI+R+V     PD          ++  GI +  +
Sbjct: 120 GIKRIVYANPYPDKLAE----DMMAASGIEICVL 149


>gi|300857552|ref|YP_003782535.1| hypothetical protein cpfrc_00135 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685006|gb|ADK27928.1| hypothetical protein cpfrc_00135 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|308275531|gb|ADO25430.1| Cytosine/adenosine deaminase [Corynebacterium pseudotuberculosis
           I19]
          Length = 167

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 53/149 (35%), Gaps = 27/149 (18%)

Query: 11  MSAALRFSRWHVGLTST-NPSVACLIV-KDGIVIGRGVTAYGGCP----HAEVQALEEA- 63
           M  A+  ++     T   +  V  +I   DG V+GRGV           HAE+ A+ EA 
Sbjct: 25  MRQAIIQAQ----ATPPGDIPVGAVIFGPDGEVLGRGVNRREADRDPLGHAEIMAIREAV 80

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                G      T  VTLEPC        CA  ++   I R+     +P     G     
Sbjct: 81  ANHDDGWRLTDCTLAVTLEPC------TMCAGALVGARIGRIFFGAYEPKTGACGSAFDV 134

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYL 142
           +    +     +   +++ E    +  + 
Sbjct: 135 VRDPAVLHVPEVRGGILQDECAALVTHFF 163


>gi|327285966|ref|XP_003227702.1| PREDICTED: deoxycytidylate deaminase-like [Anolis carolinensis]
          Length = 235

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 52/148 (35%), Gaps = 35/148 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        +  V   IV  +  ++G G                  
Sbjct: 30  EWPEYFMAVAFLSAQRSK---DPHSQVGACIVNSENKIVGIGYNGMPNGCSDDSLPWTRT 86

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G + YV L PC+       CA+ II+ GI+ 
Sbjct: 87  AESKLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNE------CAKLIIQAGIKE 140

Query: 100 VVVCVD-DPDVRVSGRGLQWLSQKGIIV 126
           V+   D   D        +     GII 
Sbjct: 141 VIFMSDKYHDTPEMTASRRLFDLAGIIY 168


>gi|316971587|gb|EFV55344.1| tRNA-specific adenosine deaminase 2 [Trichinella spiralis]
          Length = 311

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 23/110 (20%)

Query: 12  SAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEA 67
             A   +R    L+     V C+++ + ++IGRG          C HAE++A +EA    
Sbjct: 9   EEAFTLARKA--LSIGEVPVGCVLLYENVIIGRGHNRVNFYKNACRHAEMEAFDEAFLWC 66

Query: 68  RG-----------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           +             T +VT EPC        CA  I +  ++RVV    +
Sbjct: 67  KANCFSFNDVFLKTTLFVTCEPCMM------CAALICKMQLKRVVYGCPN 110


>gi|257884149|ref|ZP_05663802.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257819987|gb|EEV47135.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
          Length = 173

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVE 293
           KT   A   + TE   P         +  +   D      +    L  L       + V 
Sbjct: 52  KTYQEAKKYLETEAIYPEKKNFVFSTHAQLQLPDAEVVHEEPVAFLKNLQMTEGKDIWVV 111

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           GG  +    +  +++D   +  + +++G+ GIP   ++G  E  F  +    FG  + L 
Sbjct: 112 GGGRLIKPLVEHQMIDEWYIQIAPVLLGD-GIP-LFQKGTYEARFELLDTTRFGEFIELH 169

Query: 354 YIGK 357
           Y+ K
Sbjct: 170 YVRK 173


>gi|294813865|ref|ZP_06772508.1| cytidine/deoxycytidine deaminase [Streptomyces clavuligerus ATCC
           27064]
 gi|326442283|ref|ZP_08217017.1| deaminase [Streptomyces clavuligerus ATCC 27064]
 gi|294326464|gb|EFG08107.1| cytidine/deoxycytidine deaminase [Streptomyces clavuligerus ATCC
           27064]
          Length = 199

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 44/130 (33%), Gaps = 21/130 (16%)

Query: 30  SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
            V  +++  DG  +  G            HAEV A+  A     G      T  VTLEPC
Sbjct: 75  PVGAVVLAADGTRLATGHNERELTGDPTAHAEVLAIRRAARRIGGWRLSDCTLVVTLEPC 134

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEG 134
                   CA  I +  + RVV    D      G          L+ +  ++  ++E E 
Sbjct: 135 ------TMCAGAITQSRVGRVVYGARDEKAGAVGSLWDVVRDRRLNHRPEVIIGVLEPEC 188

Query: 135 KIFLHAYLTR 144
              +  +   
Sbjct: 189 ARLMTDFFRH 198


>gi|254563191|ref|YP_003070286.1| tRNA-specific adenosine deaminase [Methylobacterium extorquens DM4]
 gi|254270469|emb|CAX26469.1| tRNA-specific adenosine deaminase [Methylobacterium extorquens DM4]
          Length = 147

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 42/127 (33%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            V   +V+DG V+        T      HAE+ A+  A      E   G   YVTLEPC 
Sbjct: 22  PVGAAVVRDGTVLAVAGNRPRTLCDPTAHAEILAIRAACAALRDERLTGCDLYVTLEPC- 80

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPD---VRVSGRGLQW--LSQKGIIVDRMMESEGK 135
                P CA  I    IRR+     DP    V    R            +     E E  
Sbjct: 81  -----PMCAGAIAFARIRRLYYAASDPKGGGVEHGPRVFNQPTCHHAPEVYSGFREGEAA 135

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 136 GLLREFF 142


>gi|206969676|ref|ZP_03230630.1| ComE operon protein 2 [Bacillus cereus AH1134]
 gi|218899494|ref|YP_002447905.1| ComE operon protein 2 [Bacillus cereus G9842]
 gi|206735364|gb|EDZ52532.1| ComE operon protein 2 [Bacillus cereus AH1134]
 gi|218543217|gb|ACK95611.1| ComE operon protein 2 [Bacillus cereus G9842]
          Length = 185

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 55/166 (33%), Gaps = 34/166 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M   S+D  FM+ +   S      T T  +V   IV+D  +I  G      GG       
Sbjct: 1   MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +   A  YVT  PC        C + II+ GI 
Sbjct: 58  CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQ------CCKAIIQSGIT 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            V    D  +   +   ++   Q  + V  +        L      
Sbjct: 112 AVYYAQDYKNHPYA---IELFEQANVTVKHVPLEYDIAALEEQKRY 154


>gi|86738996|ref|YP_479396.1| tRNA-adenosine deaminase [Frankia sp. CcI3]
 gi|86565858|gb|ABD09667.1| tRNA-adenosine deaminase [Frankia sp. CcI3]
          Length = 176

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 53/150 (35%), Gaps = 23/150 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEE 62
              M  ALR +R        +  V  L+V +DG V+G G            HAE+ AL  
Sbjct: 26  HEAMGLALREARLA--PDHADVPVGALVVTEDGTVLGLGHNERERGADPTAHAEMIALRA 83

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A          GAT  VTLEPC        CA  ++   + R+V    D      G    
Sbjct: 84  AARRTGSWRLPGATLVVTLEPC------TMCAGALVLARVDRLVYGAVDEKAGAVGSLWD 137

Query: 118 -----WLSQKGIIVDRMMESEGKIFLHAYL 142
                 L+ +  +V  +   E    L  + 
Sbjct: 138 VVRDRRLNHRPEVVAGIRADECGALLAEFF 167


>gi|61742821|ref|NP_001012750.1| deoxycytidylate deaminase isoform a [Homo sapiens]
 gi|66840174|gb|AAH88357.2| DCMP deaminase [Homo sapiens]
 gi|119625102|gb|EAX04697.1| dCMP deaminase, isoform CRA_a [Homo sapiens]
 gi|119625103|gb|EAX04698.1| dCMP deaminase, isoform CRA_a [Homo sapiens]
          Length = 189

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 35/146 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        N  V   IV  +  ++G G                  
Sbjct: 25  EWPEYFMAVAFLSAQRSK---DPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRT 81

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G + YV L PC+       CA+ II+ GI+ 
Sbjct: 82  AENKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNE------CAKLIIQAGIKE 135

Query: 100 VVVCVD-DPDVRVSGRGLQWLSQKGI 124
           V+   D   D   +       +  G+
Sbjct: 136 VIFMSDKYHDSDEATAARLLFNMAGV 161


>gi|55623552|ref|XP_517546.1| PREDICTED: deoxycytidylate deaminase isoform 4 [Pan troglodytes]
          Length = 189

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 35/146 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        N  V   IV  +  ++G G                  
Sbjct: 25  EWPEYFMAVAFLSAQRSK---DPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRT 81

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G + YV L PC+       CA+ II+ GI+ 
Sbjct: 82  AENKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNE------CAKLIIQAGIKE 135

Query: 100 VVVCVD-DPDVRVSGRGLQWLSQKGI 124
           V+   D   D   +       +  G+
Sbjct: 136 VIFMSDKYHDSDEATAARLLFNMAGV 161


>gi|62901894|gb|AAY18898.1| deoxycytidylate deaminase [synthetic construct]
          Length = 202

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 35/146 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        N  V   IV  +  ++G G                  
Sbjct: 38  EWPEYFMAVAFLSAQRSK---DPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRT 94

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G + YV L PC+       CA+ II+ GI+ 
Sbjct: 95  AENKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNE------CAKLIIQAGIKE 148

Query: 100 VVVCVD-DPDVRVSGRGLQWLSQKGI 124
           V+   D   D   +       +  G+
Sbjct: 149 VIFMSDKYHDSDEATAARLLFNMAGV 174


>gi|61742819|ref|NP_001912.2| deoxycytidylate deaminase isoform b [Homo sapiens]
 gi|114597027|ref|XP_001160760.1| PREDICTED: similar to DCMP deaminase isoform 3 [Pan troglodytes]
 gi|114597029|ref|XP_001160671.1| PREDICTED: deoxycytidylate deaminase isoform 2 [Pan troglodytes]
 gi|114597031|ref|XP_001160617.1| PREDICTED: similar to DCMP deaminase isoform 1 [Pan troglodytes]
 gi|23503055|sp|P32321|DCTD_HUMAN RecName: Full=Deoxycytidylate deaminase; AltName: Full=dCMP
           deaminase
 gi|886280|gb|AAC37579.1| deoxycytidylate deaminase [Homo sapiens]
 gi|119625105|gb|EAX04700.1| dCMP deaminase, isoform CRA_c [Homo sapiens]
 gi|119625106|gb|EAX04701.1| dCMP deaminase, isoform CRA_c [Homo sapiens]
 gi|189053781|dbj|BAG36033.1| unnamed protein product [Homo sapiens]
          Length = 178

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 35/146 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        N  V   IV  +  ++G G                  
Sbjct: 14  EWPEYFMAVAFLSAQRSK---DPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRT 70

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G + YV L PC+       CA+ II+ GI+ 
Sbjct: 71  AENKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNE------CAKLIIQAGIKE 124

Query: 100 VVVCVD-DPDVRVSGRGLQWLSQKGI 124
           V+   D   D   +       +  G+
Sbjct: 125 VIFMSDKYHDSDEATAARLLFNMAGV 150


>gi|294930369|ref|XP_002779543.1| cytidine deaminase, putative [Perkinsus marinus ATCC 50983]
 gi|239888855|gb|EER11338.1| cytidine deaminase, putative [Perkinsus marinus ATCC 50983]
          Length = 111

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 18/105 (17%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
            S  D RFM  AL  ++     T   P V C  V +G+V+               HAE+ 
Sbjct: 15  FSVDDKRFMRVALAAAQEA-YDTDEVP-VGCAFVSNGVVLATAGNETNHTRNATRHAELV 72

Query: 59  ALEEAGEE------ARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
           A ++  ++       R +T YVT+EPC        CA  +   GI
Sbjct: 73  ATDKIYDKYKSCDAIRHSTLYVTVEPC------VMCAAALHILGI 111


>gi|57239296|ref|YP_180432.1| putative deaminase [Ehrlichia ruminantium str. Welgevonden]
 gi|58579261|ref|YP_197473.1| hypothetical protein ERWE_CDS_05970 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161375|emb|CAH58299.1| putative deaminase [Ehrlichia ruminantium str. Welgevonden]
 gi|58417887|emb|CAI27091.1| Conserved hypothetical protein (putative cytidine deaminase)
           [Ehrlichia ruminantium str. Welgevonden]
          Length = 145

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 50/147 (34%), Gaps = 22/147 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEA-- 63
           +M  A+  ++           V  +IV +G VI       V       HAE+ ++  A  
Sbjct: 6   YMRLAIGKAQEDCLEV----PVGAVIVYNGKVISCQNNSNVKNCDPTAHAEILSIRHACI 61

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD---VRVSGRGLQ 117
                       YVTLEPC+       CAQ I    IRR+     +     V    R   
Sbjct: 62  VLSTHILNQCDMYVTLEPCAM------CAQAISFARIRRLYFGAYNKKYGGVENGARVFH 115

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTR 144
           +      +   ++E E    +  +  R
Sbjct: 116 FCHSVPEVYGGILEEENIRLMTNFFRR 142


>gi|254498334|ref|ZP_05111073.1| cytidine and deoxycytidylate deaminase family protein [Legionella
           drancourtii LLAP12]
 gi|254352442|gb|EET11238.1| cytidine and deoxycytidylate deaminase family protein [Legionella
           drancourtii LLAP12]
          Length = 175

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 46/129 (35%), Gaps = 24/129 (18%)

Query: 7   DARFMSAALRFSRWHVGLTSTNP--SVACLIVKD--GIVIGRGVTA--YGGCPHAEVQAL 60
           D  +M  A+  ++        NP    A LIV +  G ++ +G+ A       H E+ A+
Sbjct: 33  DEYYMQIAIDLAKS-------NPKAPFAALIVDNKTGEILSKGINASKVNPTFHGEMVAI 85

Query: 61  EEA-GEEAR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
                E  +      T Y T EPCS       C   ++   I RVV       +   G  
Sbjct: 86  NNCVKEHPKVDWSQVTLYTTAEPCSM------CQSAVVWTKISRVVFATSFEYLINHGWN 139

Query: 116 LQWLSQKGI 124
              +    I
Sbjct: 140 QINIRAAEI 148


>gi|238895863|ref|YP_002920599.1| putative adenosine deaminase [Klebsiella pneumoniae NTUH-K2044]
 gi|238548181|dbj|BAH64532.1| putative adenosine deaminase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 154

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 18/117 (15%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG---VT-AYGGCPHAE 56
           M +S+ D R++  AL  ++ ++           ++V++  ++         +     HAE
Sbjct: 1   MTMSAHD-RYLQRALVLAKQNIADGGR--PFGAVLVRNDEIVAESVNTFHLSGDPTAHAE 57

Query: 57  VQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           + A+ +          R    Y + +PC      P C   +   G+R V     + D
Sbjct: 58  LNAVRDLAARLGSAVLRECVIYASGQPC------PMCLSALYLTGVREVFFANSNQD 108


>gi|153956292|ref|YP_001397057.1| deaminase [Clostridium kluyveri DSM 555]
 gi|219856609|ref|YP_002473731.1| hypothetical protein CKR_3266 [Clostridium kluyveri NBRC 12016]
 gi|146349150|gb|EDK35686.1| Predicted deaminase [Clostridium kluyveri DSM 555]
 gi|219570333|dbj|BAH08317.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 141

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 48/125 (38%), Gaps = 35/125 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            +D  F+  A + +      T     V  ++VK+  + G G     G P           
Sbjct: 7   DWDNYFIDIAFQVAERS---TCPRLHVGAVLVKNRRIKGTGY---NGSPRGLEHCDEAGC 60

Query: 54  -----------HAEVQALEEAGEEAR-GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                      HAEV  L E   + R  +T YVT  PC      P C + II CG++RV+
Sbjct: 61  YMKDNHCIRTIHAEVNCLLEVSPDDRENSTLYVTHMPC------PECQKLIINCGVKRVI 114

Query: 102 VCVDD 106
            C D 
Sbjct: 115 YCEDY 119


>gi|270292326|ref|ZP_06198537.1| cytidine and deoxycytidylate deaminase family protein
           [Streptococcus sp. M143]
 gi|270278305|gb|EFA24151.1| cytidine and deoxycytidylate deaminase family protein
           [Streptococcus sp. M143]
          Length = 155

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 54/149 (36%), Gaps = 33/149 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
           ++D  F + AL  +      T     V  ++VKD  VI  G      G            
Sbjct: 7   AWDEYFAAQALLIANRS---TCKRAKVGAVLVKDNKVISTGYNGSVSGTEHCIDHECLVI 63

Query: 54  --------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                   HAEV A+ +  E    +G TAYVT  PC +      C + +++ G +RVV  
Sbjct: 64  EGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLN------CTKQLLQVGCKRVVYI 117

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
                 R+         +KG  +  +   
Sbjct: 118 NQY---RMDDYAQYLYHEKGTELTHLPLE 143


>gi|126659190|ref|ZP_01730328.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Cyanothece
           sp. CCY0110]
 gi|126619495|gb|EAZ90226.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Cyanothece
           sp. CCY0110]
          Length = 143

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 35/108 (32%), Gaps = 23/108 (21%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
            +FM  AL  ++              ++V +  +I RG            H E+  L   
Sbjct: 4   EKFMREALVEAKKGDLPY------GAILVNNDEIIMRGYNTAQRDNDVSAHGEINVLRAM 57

Query: 64  G-------EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                   +  +  T Y T EPC      P CA   +  G+  +V   
Sbjct: 58  TQKIGYSLDSLKNYTLYTTCEPC------PMCAAACVWAGVSHIVFGA 99


>gi|302552546|ref|ZP_07304888.1| deaminase [Streptomyces viridochromogenes DSM 40736]
 gi|302470164|gb|EFL33257.1| deaminase [Streptomyces viridochromogenes DSM 40736]
          Length = 143

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 54/148 (36%), Gaps = 24/148 (16%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGI-VIGRGVTAY--GGCP--HAEVQALEEAG 64
           M  AL  +   V     +  V  +++  DG  V+  G      GG P  HAE+ AL  A 
Sbjct: 1   MRLALDEAAGAV--RGGDVPVGAVVLAPDGTTVLASGHNEREAGGDPTAHAELLALRRAA 58

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW- 118
                    G T  VTLEPC        CA  I +  + R+V    D      G      
Sbjct: 59  AELGTWRLAGCTLVVTLEPC------TMCAGAIQQSRVDRLVYGARDEKAGAVGSLWDLV 112

Query: 119 ----LSQKGIIVDRMMESEGKIFLHAYL 142
               L+ +  +++ ++  E    L  + 
Sbjct: 113 RDRRLNHRPEVIEGVLAEECAQLLTEFF 140


>gi|239978013|ref|ZP_04700537.1| deaminase [Streptomyces albus J1074]
 gi|291449917|ref|ZP_06589307.1| deaminase [Streptomyces albus J1074]
 gi|291352866|gb|EFE79768.1| deaminase [Streptomyces albus J1074]
          Length = 168

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 44/124 (35%), Gaps = 25/124 (20%)

Query: 3   VSSFDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPH 54
           V + +  +M  A+  +    R   G          LI KDG+V+  G            H
Sbjct: 11  VRALERAWMEQAISLATDSARSGGG------PFGALIAKDGLVVATGHNQVTASLDPSAH 64

Query: 55  AEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AEV A+  A +E       G     + EPC     +   A       + R+V   D  D 
Sbjct: 65  AEVSAIRAACKELNTFSLAGCVLITSCEPCPMCLSTALWA------RVDRLVYAADRHDA 118

Query: 110 RVSG 113
            V+G
Sbjct: 119 AVAG 122


>gi|228923079|ref|ZP_04086371.1| ComE operon protein 2 [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228836577|gb|EEM81926.1| ComE operon protein 2 [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 185

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 55/166 (33%), Gaps = 34/166 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M   S+D  FM+ +   S      T T  +V   IV+D  +I  G      GG       
Sbjct: 1   MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +   A  YVT  PC        C + II+ GI 
Sbjct: 58  CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQ------CCKAIIQSGIT 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            V    D  +   +   ++   Q  + V  +        L      
Sbjct: 112 AVYYAQDYKNHPYA---IELFEQANVTVKHVPLEYDIAALEEQKRY 154


>gi|315230916|ref|YP_004071352.1| carbon monoxide dehydrogenase CooS-like protein subunit
           [Thermococcus barophilus MP]
 gi|315183944|gb|ADT84129.1| carbon monoxide dehydrogenase CooS-like protein subunit
           [Thermococcus barophilus MP]
          Length = 633

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 8/112 (7%)

Query: 15  LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHA--EVQALEEAGEEARGATA 72
           ++ +  HV LT        LI +D +V+G G        H     +A + AGE  R    
Sbjct: 457 VKHNHSHVTLTKE------LIKRDILVVGTGCWGIAAAMHGLLTPEAAKMAGEGLRAVCE 510

Query: 73  YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            + + PC H G    C++ +I  G     + VD PD+ V+G   +W+S+K +
Sbjct: 511 TLGIPPCLHMGSCVDCSRILIVLGALAEALGVDIPDLPVAGSAPEWMSEKAV 562


>gi|164688345|ref|ZP_02212373.1| hypothetical protein CLOBAR_01990 [Clostridium bartlettii DSM
           16795]
 gi|164602758|gb|EDQ96223.1| hypothetical protein CLOBAR_01990 [Clostridium bartlettii DSM
           16795]
          Length = 163

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 52/147 (35%), Gaps = 33/147 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
           S+D  FM  +L      +     +  V   IV  D  ++  G                  
Sbjct: 8   SWDEYFMGISL---LSGMRSKDPSTQVGACIVDSDNRIVSIGYNGFLNGCSDEDFPWERE 64

Query: 47  -----TAYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                T Y    HAE  A+  A G+   G + YV L PC    R+      II+ GI++V
Sbjct: 65  GDFLNTKYPYVVHAEQNAILNARGKNLEGCSIYVNLFPCHDCARN------IIQSGIKKV 118

Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVD 127
               D      S +  +++ +K  +  
Sbjct: 119 YYLEDKYKDTDSTKASKFMFEKAKVEC 145


>gi|325104971|ref|YP_004274625.1| Guanine deaminase [Pedobacter saltans DSM 12145]
 gi|324973819|gb|ADY52803.1| Guanine deaminase [Pedobacter saltans DSM 12145]
          Length = 158

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 16/123 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI-GRGVT---AYGGCPHAEVQALEEA 63
             FM+ A+  +  +V      P    +IVK+G +I   G T         HAE+ A+  A
Sbjct: 7   REFMNLAIEKASENVKTGKGGP-FGSVIVKNGKIISATGNTVNKTCDPTAHAEIAAIRLA 65

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            +E +     G   Y + EPC      P C   I    I ++       D   +G    +
Sbjct: 66  CQELKSVTLEGCEIYASCEPC------PMCLSAIYWAKIDKLYYAATKEDASEAGFDDTF 119

Query: 119 LSQ 121
           L +
Sbjct: 120 LYK 122


>gi|333025914|ref|ZP_08453978.1| putative cytidine/deoxycytidine deaminase [Streptomyces sp. Tu6071]
 gi|332745766|gb|EGJ76207.1| putative cytidine/deoxycytidine deaminase [Streptomyces sp. Tu6071]
          Length = 163

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 37/103 (35%), Gaps = 16/103 (15%)

Query: 30  SVACLIVKD-GIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPC 79
            V  +++   G  + R             HAEV AL  A          G T  VTLEPC
Sbjct: 38  PVGAVVLDASGTELARARNEREATHDPTAHAEVLALRRAAAVRGEWRLTGCTLVVTLEPC 97

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                 P CA  + +  + RVV    DP    +G     L  +
Sbjct: 98  ------PMCAGALTQSRVERVVYGARDPKAGAAGSQWDLLRDR 134


>gi|297582578|ref|YP_003698358.1| CMP/dCMP deaminase zinc-binding protein [Bacillus selenitireducens
           MLS10]
 gi|297141035|gb|ADH97792.1| CMP/dCMP deaminase zinc-binding protein [Bacillus selenitireducens
           MLS10]
          Length = 152

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 17/113 (15%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCP---HAE-- 56
           +   +A FM  A+  ++        N     ++VKDG V+ RG    + G     HAE  
Sbjct: 1   MEKTEAYFMKQAIDLAKRAR--EEGNEPFGAILVKDGEVVMRGANHIHSGSDPTFHAELG 58

Query: 57  -VQALEEAGE--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
            ++A   A +  +    T Y + EPC        C+  ++   + +VV  V  
Sbjct: 59  LIRAYCSAYQVSDLSEYTLYTSCEPC------VMCSGAMVWANLGKVVYSVSH 105


>gi|116621653|ref|YP_823809.1| guanine deaminase [Candidatus Solibacter usitatus Ellin6076]
 gi|116224815|gb|ABJ83524.1| Guanine deaminase [Candidatus Solibacter usitatus Ellin6076]
          Length = 154

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 37/106 (34%), Gaps = 25/106 (23%)

Query: 10  FMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
           FM  A+  +    R   G        A L+VKDGIVI  G            HAE+ A+ 
Sbjct: 5   FMQQAIEMAVANVRRGGG------PFAALVVKDGIVIASGANQVTRSNDPTAHAEIVAIR 58

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           EA       +  G   Y T EPC      P C   I       V  
Sbjct: 59  EACRVLGDFQLPGCEIYTTCEPC------PMCLGAIYWARPAAVYY 98


>gi|254390387|ref|ZP_05005604.1| deaminase [Streptomyces clavuligerus ATCC 27064]
 gi|197704091|gb|EDY49903.1| deaminase [Streptomyces clavuligerus ATCC 27064]
          Length = 142

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 44/130 (33%), Gaps = 21/130 (16%)

Query: 30  SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
            V  +++  DG  +  G            HAEV A+  A     G      T  VTLEPC
Sbjct: 18  PVGAVVLAADGTRLATGHNERELTGDPTAHAEVLAIRRAARRIGGWRLSDCTLVVTLEPC 77

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEG 134
                   CA  I +  + RVV    D      G          L+ +  ++  ++E E 
Sbjct: 78  ------TMCAGAITQSRVGRVVYGARDEKAGAVGSLWDVVRDRRLNHRPEVIIGVLEPEC 131

Query: 135 KIFLHAYLTR 144
              +  +   
Sbjct: 132 ARLMTDFFRH 141


>gi|157150018|ref|YP_001450270.1| ComE operon family protein [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157074812|gb|ABV09495.1| comE operon protein 2 family [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 155

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 30/119 (25%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           ++D  F + AL  +      T     V  ++VKD  VI  G                   
Sbjct: 7   AWDEYFAAQALLIANRS---TCKRARVGAVLVKDNKVISTGYNGSVSGTEHCIDHECLII 63

Query: 54  --------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAEV A+ +  E    +G TAYVT  PC +      C + +++ G +RVV 
Sbjct: 64  DGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLN------CTKQLLQVGCKRVVY 116


>gi|289640846|ref|ZP_06473017.1| CMP/dCMP deaminase zinc-binding [Frankia symbiont of Datisca
           glomerata]
 gi|289509422|gb|EFD30350.1| CMP/dCMP deaminase zinc-binding [Frankia symbiont of Datisca
           glomerata]
          Length = 157

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 39/124 (31%), Gaps = 16/124 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCPHAEVQALEE 62
             +M  AL  +R      + +P V  +I   DG  I               HAE+  L  
Sbjct: 5   EPWMRRALEMARALPDPGAGDPPVGAVIYGPDGREITAAHHDRQRTADPTAHAEITVLRR 64

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           AG      +  G T   TLEP          A  ++   + R+V+   D           
Sbjct: 65  AGRALGTWKLDGCTLVTTLEPG------VMAAGAVVLARMPRLVIGSWDERNGAVCSQWD 118

Query: 118 WLSQ 121
            +  
Sbjct: 119 LVRD 122


>gi|308189593|ref|YP_003922524.1| dCMP deaminase [Mycoplasma fermentans JER]
 gi|319776745|ref|YP_004136396.1| deoxycytidylate deaminase protein [Mycoplasma fermentans M64]
 gi|238810149|dbj|BAH69939.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|307624335|gb|ADN68640.1| dCMP deaminase [Mycoplasma fermentans JER]
 gi|318037820|gb|ADV34019.1| Deoxycytidylate deaminase protein [Mycoplasma fermentans M64]
          Length = 163

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 53/151 (35%), Gaps = 36/151 (23%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPS--VA-CLIVKDGIVIGRGV---------------- 46
           +D  FM+ A         L S +PS  V  C++ ++  +I  G                 
Sbjct: 8   WDGYFMALA-----KVSALRSKDPSTKVGACVVNENKRIIALGYNGMPKGIDDEFPWDRE 62

Query: 47  ------TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                 T Y    HAE+ A+       +G T + +L PCS       CA+ I + GI  V
Sbjct: 63  GESPKETKYAYVVHAEMNAILNTNNNLQGCTIFTSLYPCS------SCAKTIAQSGISEV 116

Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
           V   D           + +     I  R +E
Sbjct: 117 VYEDDKYHDTEDAEIARHILNASNIKTRKIE 147


>gi|227355681|ref|ZP_03840074.1| deaminase-reductase domain protein [Proteus mirabilis ATCC 29906]
 gi|227164000|gb|EEI48897.1| deaminase-reductase domain protein [Proteus mirabilis ATCC 29906]
          Length = 190

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 71/215 (33%), Gaps = 44/215 (20%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL----LRAQSDAILVGIGTVLADD 204
                + IA S D  I         +    + + +      L  + DA+++G  T+    
Sbjct: 13  FMANIVFIATSLDGYIADRQGKLDWLYSIQNLDNIDTGFITLMEKIDALVMGRNTLDT-- 70

Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
                             IL  +        +   +     +                 N
Sbjct: 71  ------------------ILSFNCDWPYTKPVFVLSNSMTTV-------------PNGYN 99

Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
             +       L+ ++T L  +G   L ++GG  V  SF+N  L+D +I+ R  I++G G 
Sbjct: 100 GKVFLVKGE-LQDIITELNAKGFNELYIDGGVTV-QSFLNEDLIDQMIITRFPILLGGG- 156

Query: 325 IPSPL-EEGYLEKNFMCVRRDYFGSDVC-LEYIGK 357
             +PL  E     NF  ++ +    ++    Y+  
Sbjct: 157 --TPLFGELKQPLNFKVIKNEVLLENLVQTTYLRD 189


>gi|170728271|ref|YP_001762297.1| zinc-binding CMP/dCMP deaminase [Shewanella woodyi ATCC 51908]
 gi|169813618|gb|ACA88202.1| CMP/dCMP deaminase zinc-binding [Shewanella woodyi ATCC 51908]
          Length = 145

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 42/116 (36%), Gaps = 26/116 (22%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----------- 51
           ++ +D RF+  A   + W       +  V  +I +D  ++  G   Y             
Sbjct: 2   MTKWDVRFLQMAELVASWSK---DPSTQVGAVITEDNRIVSLGFNGYPHGISDSAETDNR 58

Query: 52  ------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                   HAE  A+  A  +  G   +VT  PC      P CA  II+ G+  V 
Sbjct: 59  EMKLLKTLHAEENAILYAKRDLSGCEIWVTHFPC------PNCAAKIIQTGLTTVH 108


>gi|300853441|ref|YP_003778425.1| cytidine deaminase [Clostridium ljungdahlii DSM 13528]
 gi|300433556|gb|ADK13323.1| cytidine deaminase [Clostridium ljungdahlii DSM 13528]
          Length = 136

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 49/125 (39%), Gaps = 35/125 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            +D  F+  A + +      T     V  ++VK+  + G G     G P           
Sbjct: 4   DWDNYFIDIAFKVAERS---TCPRLHVGAVLVKNRRIKGTGY---NGSPRGLEHCEDVGC 57

Query: 54  -----------HAEVQALEE-AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                      HAEV  L E A ++   +T YVT  PC      P C + II CGI+RVV
Sbjct: 58  YMKNNHCVRTIHAEVNCLLEVAPDDRESSTLYVTHMPC------PECQKLIITCGIKRVV 111

Query: 102 VCVDD 106
            C + 
Sbjct: 112 YCEEY 116


>gi|218682181|ref|ZP_03529782.1| CMP/dCMP deaminase zinc-binding protein [Rhizobium etli CIAT 894]
          Length = 145

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 51/146 (34%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA--- 63
           M  AL  +R   G     P +  ++V D I + R             HAE+ A+  A   
Sbjct: 1   MEMALEEAR-AAGERGEVP-IGAVVVIDDIAVSRSGNRTRELNDVTAHAEIAAIRLACEA 58

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW--- 118
              E   GA  YVTLEPC        CA  I    IRR+    +DP       G+++   
Sbjct: 59  LGQERLAGADLYVTLEPC------TMCAAAISFARIRRLYYGAEDPKGGGVDNGVRFYAQ 112

Query: 119 --LSQKGIIVDRMMESEGKIFLHAYL 142
                   +     E +    L  + 
Sbjct: 113 PTCHHAPEVYSGFNEVQSAEILRRFF 138


>gi|59712282|ref|YP_205058.1| pyrimidine reductase [Vibrio fischeri ES114]
 gi|59480383|gb|AAW86170.1| pyrimidine reductase [Vibrio fischeri ES114]
          Length = 177

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 72/203 (35%), Gaps = 45/203 (22%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPI-----TGFISKNQVHLLRAQSDAILVGIGTVLADD 204
              ++ IA S D  I     G   +         S   V     + DA+++G  T+  D 
Sbjct: 1   MSNSVFIATSLDGYIADKNGGLDWLHAIPNPEQDSMGFVEHF-DRIDAMVMGRNTL--DM 57

Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
                             +L    +      +           V  N    +   +  K 
Sbjct: 58  ------------------VLSFDVEWPYSKPVF----------VLSNTMTSVPEGYEDK- 88

Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
              ++    +LK++L  +  +G  +L ++GG     +F+   L+D +I+    +++G G 
Sbjct: 89  ---VFLVKGELKEVLNEIHAKGFKNLYIDGGVT-IQNFLKEDLIDELIITTIPVLLGGG- 143

Query: 325 IPSPLEEGYLEK-NFMCVRRDYF 346
             SPL  G  +  NF  V+ + F
Sbjct: 144 --SPLFAGLEQPLNFKFVKSETF 164


>gi|318062198|ref|ZP_07980919.1| cytidine/deoxycytidine deaminase [Streptomyces sp. SA3_actG]
 gi|318079391|ref|ZP_07986723.1| cytidine/deoxycytidine deaminase [Streptomyces sp. SA3_actF]
          Length = 163

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 37/103 (35%), Gaps = 16/103 (15%)

Query: 30  SVACLIVKD-GIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPC 79
            V  +++   G  + R             HAEV AL  A          G T  VTLEPC
Sbjct: 38  PVGAVVLDASGTELARARNEREATHDPTAHAEVLALRRAAAVRGEWRLTGCTLVVTLEPC 97

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                 P CA  + +  + RVV    DP    +G     L  +
Sbjct: 98  ------PMCAGALTQSRVERVVYGARDPKAGAAGSQWDLLRDR 134


>gi|302669645|ref|YP_003829605.1| deoxycytidylate deaminase [Butyrivibrio proteoclasticus B316]
 gi|302394118|gb|ADL33023.1| deoxycytidylate deaminase [Butyrivibrio proteoclasticus B316]
          Length = 170

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 54/153 (35%), Gaps = 34/153 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVA-CLIVKDGIVIGRGV-------------TAYG 50
           S+D  FM  A + +   +     N  V  C++ +D  ++  G                  
Sbjct: 18  SWDEYFMGVA-KLA--AMRSKDPNTQVGSCIVSEDNNILSMGYNGFPKGCSDEEFPWERD 74

Query: 51  GC----------PHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
           G            H+E+ A+    G    GA  YV+L PC+       CA+ II+ GIR 
Sbjct: 75  GEDELGTKYPFVTHSELNAILNYRGGSLVGAKIYVSLFPCNE------CAKAIIQAGIRT 128

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
           VV   D      S R  + +     +     + 
Sbjct: 129 VVYDSDKYSTSASTRASKKMFDAAGVRYYQYQP 161


>gi|294495546|ref|YP_003542039.1| CMP/dCMP deaminase zinc-binding protein [Methanohalophilus mahii
           DSM 5219]
 gi|292666545|gb|ADE36394.1| CMP/dCMP deaminase zinc-binding protein [Methanohalophilus mahii
           DSM 5219]
          Length = 150

 Score = 59.1 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 16/103 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE- 65
           M  A+  +R  +      P    +IVKD  VI R             HAE+ A+  A   
Sbjct: 1   MEIAIEQARLGMRNNLGGP-FGAVIVKDETVISRAHNRVLDSNDPTAHAEIMAIRIASSK 59

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
               +      Y T  PC      P C   +    I+ +    
Sbjct: 60  LGTFDLSECEIYTTSYPC------PMCMSALYWARIKTLYYGT 96


>gi|261879068|ref|ZP_06005495.1| guanine deaminase [Prevotella bergensis DSM 17361]
 gi|270334349|gb|EFA45135.1| guanine deaminase [Prevotella bergensis DSM 17361]
          Length = 155

 Score = 59.1 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 17/108 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEE 66
           M  A+  S   V +T   P    +I ++G+V+     +    +    HAEV A+  A + 
Sbjct: 7   MRRAIVLSEKSV-MTGGGP-FGAVIARNGVVLAEASNSVTIDHDPTAHAEVNAIRVACDR 64

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
                  G   Y + EPC      P C   I    +  +    +    
Sbjct: 65  LHTFDLSGCEIYCSCEPC------PMCLGAIYWARLDHIYYANNRKAA 106


>gi|255693462|ref|ZP_05417137.1| guanine deaminase [Bacteroides finegoldii DSM 17565]
 gi|260620746|gb|EEX43617.1| guanine deaminase [Bacteroides finegoldii DSM 17565]
          Length = 156

 Score = 59.1 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 18/114 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGG----CPHAEVQALEE 62
              M  A+  S+ ++           +I  K+G ++  GV           HAEV A+  
Sbjct: 4   EELMRKAIELSKENIENGGG--PFGAVIATKEGEIVATGVNRVTASCDPTAHAEVSAIRA 61

Query: 63  AGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           A  +       G   Y + EPC      P C   I    + ++    +  D + 
Sbjct: 62  AAAKLGTFNLSGYEIYTSCEPC------PMCLGAIYWARLDKMYYGNNKTDAKN 109


>gi|312877655|ref|ZP_07737611.1| CMP/dCMP deaminase zinc-binding [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311795548|gb|EFR11921.1| CMP/dCMP deaminase zinc-binding [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 175

 Score = 59.1 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 17/124 (13%)

Query: 30  SVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCSHYG 83
            VA  +VKDG +I      +     HAE+ A+ +A      ++ R    +VT EPC    
Sbjct: 53  PVAAAVVKDGRIISIKRNDSKKAIYHAEILAIIDATSKLSTKDLRSCEMFVTKEPC---- 108

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGKIFL 138
             P C   I+   ++R+     D  +  +           L+ K  ++  + E E ++ L
Sbjct: 109 --PMCMSAIVLSKVKRLYFGARDFKMGAAESCFNLSQHPFLNHKVEVIGGICEDECRLLL 166

Query: 139 HAYL 142
             + 
Sbjct: 167 KRFF 170


>gi|209886320|ref|YP_002290177.1| cytidine/deoxycytidylate deaminase family protein [Oligotropha
           carboxidovorans OM5]
 gi|209874516|gb|ACI94312.1| cytidine/deoxycytidylate deaminase family protein [Oligotropha
           carboxidovorans OM5]
          Length = 154

 Score = 59.1 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 40/105 (38%), Gaps = 17/105 (16%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
            RF+  A+  +R +V           ++VKDG VI  GV   G       HAE+QA+  A
Sbjct: 5   ERFLCEAIELARNNVRNGGR--PFGAVLVKDGKVIATGVNEIGATGDPTTHAELQAIRAA 62

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                     G   Y +  PC      P C   +   GIR +   
Sbjct: 63  SRVLGTPRLDGCIVYASGHPC------PMCLAAMHLTGIRELAYA 101


>gi|312378080|gb|EFR24748.1| hypothetical protein AND_10447 [Anopheles darlingi]
          Length = 186

 Score = 59.1 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 58/181 (32%), Gaps = 31/181 (17%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVK-----DGIVIGRGVTA----YGGCPHAEVQAL 60
           FM  AL+ +R    L      V C+ V      DG++I RG            H E   +
Sbjct: 4   FMEDALQQARLANDL--KEVPVGCVFVYGPNEGDGVIIARGCNLVNETKNATRHVEFICI 61

Query: 61  EEAGEEARGA------------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           ++A E AR              +  VT+EPC        CA  ++  G+R +V    +  
Sbjct: 62  DQALEYARAHGFEPPESIFTSISVVVTVEPCIM------CAAALLNLGVREIVYGCRNDR 115

Query: 109 VRVSG--RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM 166
              S      + L     I   +   E    L  +   +         + +VS       
Sbjct: 116 FGGSTVLDVARLLKSNIPIRGGVRGDEAMELLKEFYKGENPSAPMPKARTSVSFKGYTVH 175

Query: 167 A 167
            
Sbjct: 176 H 176


>gi|237831707|ref|XP_002365151.1| tRNA-specific adenosine deaminase, putative [Toxoplasma gondii
           ME49]
 gi|211962815|gb|EEA98010.1| tRNA-specific adenosine deaminase, putative [Toxoplasma gondii
           ME49]
 gi|221487001|gb|EEE25247.1| tRNA-specific adenosine deaminase, putative [Toxoplasma gondii GT1]
 gi|221506684|gb|EEE32301.1| tRNA-specific adenosine deaminase, putative [Toxoplasma gondii VEG]
          Length = 178

 Score = 59.1 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 62/179 (34%), Gaps = 35/179 (19%)

Query: 4   SSFDAR-FMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTA----YGGCPHAE 56
           +  D R FMSAAL  +R    L      V C++V  K   V+ RG  A         H E
Sbjct: 5   TEADKRLFMSAALEEARLA--LKEGEVPVGCVLVDSKTRQVVSRGRNATNRTKNATRHCE 62

Query: 57  VQALEEA----------GEEAR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           ++AL+            G E R        +VT EPC        CA  +   G++RV  
Sbjct: 63  LEALDAYMALLPPPNIGGVEPRVDLSSIDLFVTCEPC------VMCAVALQCSGVKRVFY 116

Query: 103 CVDDPDVRVSGRGLQWLSQ-----KGIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLK 155
              +      G  L +  +     KG+     +   E    L ++ +R           
Sbjct: 117 GCGNDRFGGCGSVLSFHKRLSEQWKGLECYSGIFREEAIDLLRSFYSRGNPNAPEEKRH 175


>gi|152997358|ref|YP_001342193.1| deaminase-reductase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150838282|gb|ABR72258.1| bifunctional deaminase-reductase domain protein [Marinomonas sp.
           MWYL1]
          Length = 181

 Score = 59.1 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 66/197 (33%), Gaps = 43/197 (21%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITG--FISKNQVHLL--RAQSDAILVGIGTVLADDPEL 207
             + IA S D  I         +             L    + D +++G  T+       
Sbjct: 3   NIVFIACSLDGFIADQHGKLDWLDSVSNPDNIDTGFLSIMERIDGLIMGRNTLET----- 57

Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
                          ++        +          PV I++     V      K     
Sbjct: 58  ---------------VMSFEGDWPYN---------KPVFILSSTMTEVPKAFKDK----- 88

Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           I+    +LK ++  L  +G+ +L ++GG     SF+   L+D II+ +  I++G G   +
Sbjct: 89  IFLIKGELKGIVAKLKRKGINNLYIDGG-KTIQSFLKEDLIDEIIITQFPILLGGG---T 144

Query: 328 PLEEGYLEKNFMCVRRD 344
           PL  G L++       D
Sbjct: 145 PLF-GMLKQPLKFTLTD 160


>gi|332980851|ref|YP_004462292.1| CMP/dCMP deaminase zinc-binding protein [Mahella australiensis 50-1
           BON]
 gi|332698529|gb|AEE95470.1| CMP/dCMP deaminase zinc-binding protein [Mahella australiensis 50-1
           BON]
          Length = 170

 Score = 59.1 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 57/154 (37%), Gaps = 43/154 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D  FM+  +   +     T     V  +IVKD  ++  G                   
Sbjct: 4   SWDEYFMNM-VEIVK--TRSTCLRRQVGAIIVKDKRMLASGYNGAPSGVRHCDEVGCLRE 60

Query: 47  --TAYGGCP-------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                 G         HAE  A+ +A   G   + AT Y+T +PC+       CA+ II 
Sbjct: 61  QMHIPSGQRQELCRAIHAEQNAIAQAAMMGISVKDATIYITTQPCAI------CAKMIIN 114

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
            GI R+V   D PD       +  L + GI V R
Sbjct: 115 AGITRIVYKGDYPDALA----MDLLREAGIEVAR 144


>gi|294622902|ref|ZP_06701815.1| riboflavin biosynthesis protein RibD C-domain protein [Enterococcus
           faecium U0317]
 gi|291597674|gb|EFF28827.1| riboflavin biosynthesis protein RibD C-domain protein [Enterococcus
           faecium U0317]
          Length = 173

 Score = 59.1 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D    L  L       + V GG  +    +  +++D   +  + +++G+ GIP   ++
Sbjct: 90  NEDPVAFLKNLQMTEGKDIWVVGGGRLIKPLLEHQMIDEWYIQITPVLLGD-GIP-LFQK 147

Query: 332 GYLEKNFMCVRRDYFGSDVCLEYIGK 357
           G  E  F  +    FG  + L Y+ K
Sbjct: 148 GTYEARFEMLDTTRFGEFIELHYVRK 173


>gi|326428921|gb|EGD74491.1| tRNA-specific adenosine deaminase [Salpingoeca sp. ATCC 50818]
          Length = 191

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 44/123 (35%), Gaps = 24/123 (19%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTA----YGGCPHAEVQALEE--- 62
           M AA+  ++    L      V C+ V D G V   G       +    HAE+ A ++   
Sbjct: 1   MEAAVAEAQRA--LAEGEVPVGCVFVDDNGNVQAAGRNQTNIEHNATRHAELVAFDDCVA 58

Query: 63  --------AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
                   A +     T YVT+EPC        CA  +   G+ RVV    +      G 
Sbjct: 59  RCGGDVEKAKDIVASCTLYVTVEPC------VMCAYALRLLGVTRVVFGCHNDRFGGCGS 112

Query: 115 GLQ 117
            + 
Sbjct: 113 TMD 115


>gi|167755827|ref|ZP_02427954.1| hypothetical protein CLORAM_01343 [Clostridium ramosum DSM 1402]
 gi|237734796|ref|ZP_04565277.1| deoxycytidylate deaminase [Mollicutes bacterium D7]
 gi|167704766|gb|EDS19345.1| hypothetical protein CLORAM_01343 [Clostridium ramosum DSM 1402]
 gi|229382124|gb|EEO32215.1| deoxycytidylate deaminase [Coprobacillus sp. D7]
          Length = 154

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 48/148 (32%), Gaps = 36/148 (24%)

Query: 8   ARFMSAALRFSRWHVGLTS-TNPSVACLIVKD-GIVIGRGV------------------- 46
             FM      ++     +   N  V   IV +   ++G G                    
Sbjct: 9   QYFMG----VAKLSAFRSKDPNTQVGACIVNEANKIVGVGYNGLPWGCEDNEFPWEVREG 64

Query: 47  ----TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
               T Y    HAE+ A+  +  + +G   YV+L PC        C + II+ GI  +V 
Sbjct: 65  DLYETKYPYVVHAELNAILNSTGQLKGCRIYVSLFPCHE------CVKAIIQSGISEIVY 118

Query: 103 CVDDPD-VRVSGRGLQWLSQKGIIVDRM 129
             D            + L   G+   ++
Sbjct: 119 EDDKYKGTDSDRAAKRMLDAAGVKYTKV 146


>gi|148232294|ref|NP_001084625.1| dCMP deaminase [Xenopus laevis]
 gi|46249834|gb|AAH68731.1| MGC81193 protein [Xenopus laevis]
          Length = 190

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 49/146 (33%), Gaps = 35/146 (23%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-------------------- 46
             FM+ A   ++        +  V   IV  +  ++G G                     
Sbjct: 28  EYFMAVAFLAAQRSK---DPSSQVGACIVNSENKIVGIGYNGMPNGCHDDVLPWARTAED 84

Query: 47  ---TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
              T Y    HAE+ A+  +   + +G T YV L PC+       CA+ +I+ GI+ VV 
Sbjct: 85  RLDTKYPYVCHAELNAIMNKNTADVKGCTMYVALFPCNE------CAKLVIQAGIKEVVF 138

Query: 103 CVD-DPDVRVSGRGLQWLSQKGIIVD 127
             D   D              GI   
Sbjct: 139 MSDKYHDNPEMTAARHMFDLAGIKYT 164


>gi|238650838|ref|YP_002916693.1| tRNA-specific adenosine deaminase [Rickettsia peacockii str.
           Rustic]
 gi|238624936|gb|ACR47642.1| tRNA-specific adenosine deaminase [Rickettsia peacockii str.
           Rustic]
          Length = 168

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 21/130 (16%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTN-PSVACLIVK--DGIVIGRGVT----AYGGCPHAE 56
           ++F+  FM  AL+ ++        N   V  ++V   +  +I               HAE
Sbjct: 9   ANFNNFFMEQALKQAKIAF---DKNEVPVGAVVVDRLNQKIIASTHNNTEEKNNALYHAE 65

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ +A      +       YVTLEPC+       CA  I    ++R+     D     
Sbjct: 66  IIAINKACNLISSKNLNDYDIYVTLEPCAM------CAAAIAHSRLKRLFYGASDSKHGA 119

Query: 112 SGRGLQWLSQ 121
               L++ + 
Sbjct: 120 VESNLRYFNS 129


>gi|225714908|gb|ACO13300.1| Deoxycytidylate deaminase [Esox lucius]
          Length = 201

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 54/150 (36%), Gaps = 35/150 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        +  V   IV  +  ++G G                  
Sbjct: 31  EWPEYFMAVAFLPAQRSK---DPSSQVGACIVNPENKIVGIGYNGMPNGCDDDLLPWSRY 87

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G + YV L PC+       CA+ II+ GI+ 
Sbjct: 88  ADDRLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNE------CAKLIIQAGIKE 141

Query: 100 VVVCVD-DPDVRVSGRGLQWLSQKGIIVDR 128
           V+   D   D        + L+  GI   +
Sbjct: 142 VIYLSDKYHDTTEMTASRRLLNLAGIEYKQ 171


>gi|327191131|gb|EGE58176.1| CMP/dCMP deaminase zinc-binding protein [Rhizobium etli CNPAF512]
          Length = 145

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 51/146 (34%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA--- 63
           M  AL  +R   G     P +  ++V D I + R             HAE+ A+  A   
Sbjct: 1   MEMALEEAR-AAGERGEVP-IGAVVVIDDIAVSRSGNRTRERNDVTAHAEIAAIRLACEA 58

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW--- 118
              E   GA  YVTLEPC        CA  I    IRR+    +DP       G+++   
Sbjct: 59  LGQERLAGADLYVTLEPC------TMCAAAISFARIRRLYYGAEDPKGGAVDNGVRFYAQ 112

Query: 119 --LSQKGIIVDRMMESEGKIFLHAYL 142
                   +     E +    L  + 
Sbjct: 113 PTCHHAPEVYSGFNEVQSAEILRTFF 138


>gi|291385964|ref|XP_002709531.1| PREDICTED: dCMP deaminase [Oryctolagus cuniculus]
          Length = 178

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 51/148 (34%), Gaps = 35/148 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        N  V   IV  +  ++G G                  
Sbjct: 14  EWPEYFMAVAFLSAQRSK---DPNSQVGACIVNAENKIVGIGYNGMPNGCSDDLLPWRRT 70

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G + YV L PC+       CA+ II+ GI+ 
Sbjct: 71  AENKLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNE------CAKLIIQAGIKE 124

Query: 100 VVVCVDDPDVRVSGRGLQWLSQ-KGIIV 126
           V+   D           + +    G+  
Sbjct: 125 VIFMSDKYHDSDETTAARLMFDMAGVAF 152


>gi|194246540|ref|YP_002004179.1| Cytosine/adenosine deaminase [Candidatus Phytoplasma mali]
 gi|193806897|emb|CAP18326.1| Cytosine/adenosine deaminase [Candidatus Phytoplasma mali]
          Length = 151

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 53/153 (34%), Gaps = 21/153 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
           + + D  FM  A + ++           V  + V +  +I R             HAE  
Sbjct: 1   MLNEDLFFMKEAFKEAKKAYYKNE--VPVGAVAVLNNQIIARTHNNCEKKQIFFGHAEFL 58

Query: 59  ALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            + +  ++ +         YVTLEPC        CA  +I+  I +V   V++       
Sbjct: 59  LMMKLNKKFKNRRLNKINIYVTLEPCLM------CAGALIQTQINKVYYSVNNYKSGSID 112

Query: 114 RGLQWLS----QKGIIVDRMMESEGKIFLHAYL 142
             +  L      K I    ++  E KI L  + 
Sbjct: 113 SVISLLKFKYPHKIITESGLLAKENKILLKNFF 145


>gi|317968925|ref|ZP_07970315.1| putative cytosine deaminase [Synechococcus sp. CB0205]
          Length = 144

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 52/148 (35%), Gaps = 19/148 (12%)

Query: 11  MSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTAY--GGCP--HAEVQALEEA 63
           M   +  +R     G +     +  ++ + DG ++ RG       G P  H E Q +   
Sbjct: 1   MQRLVDAARAEAERGWSEGGIPIGAVLAQEDGTIVARGHNQRVQNGDPTSHGETQCIRNP 60

Query: 64  GEEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           G     R  T   TL PC      P CA   +  G RRVV+               WL +
Sbjct: 61  GRRRDWRELTLVTTLSPC------PMCAGTAVLLGFRRVVIGERKTFQGAET----WLKE 110

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            GI V  + +   +  +     ++ E  
Sbjct: 111 AGIEVTCLDDPHCEELMQTMQQQKPELW 138


>gi|198274233|ref|ZP_03206765.1| hypothetical protein BACPLE_00373 [Bacteroides plebeius DSM 17135]
 gi|198272908|gb|EDY97177.1| hypothetical protein BACPLE_00373 [Bacteroides plebeius DSM 17135]
          Length = 144

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 17/149 (11%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
           + D+ +M      +            V  ++V    ++ R      T +    HAE+QAL
Sbjct: 2   ADDSFYMKQ--ALAEAARAAERGEVPVGAVVVCRDRILARAHNLTETLHDVTAHAEMQAL 59

Query: 61  EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             A            T YVT+EPC        CA  I    + R+V   +D         
Sbjct: 60  TAAANSLGAKYLTDCTLYVTVEPC------VMCAGAIAWSQVGRLVFGAEDEKRGYQRYA 113

Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            Q L  K ++V  ++  E    +  +  +
Sbjct: 114 PQALHPKTVVVKGVLADECAGLMKDFFRK 142


>gi|320586926|gb|EFW99589.1| cytosine deaminase [Grosmannia clavigera kw1407]
          Length = 170

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 61/157 (38%), Gaps = 24/157 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPS-----VACLIV-KDGIVIGRGVTAYG--GCP--HAE 56
           D   +  AL  ++         P      +   +V  DG ++G+G       G P  H E
Sbjct: 4   DQEALQIALDEAKAGFAEGGVPPRLTMAQIGAALVSADGTLMGKGRNQRVQLGSPIHHGE 63

Query: 57  VQALEEAGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
              L   G  +    +G+T Y TL PC        C    I  GI+RVV+  +   +   
Sbjct: 64  TSTLYNTGRLSASAYKGSTMYTTLSPCDM------CTGACILYGIKRVVIGENRTFLGGE 117

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
                +L Q+GI V  +  SE +  + A++ +  E  
Sbjct: 118 ----AYLKQRGIDVVVLDNSECRELMEAFIAKSPELW 150


>gi|168007071|ref|XP_001756232.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692742|gb|EDQ79098.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 185

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 16/116 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           V+  D  F+S A+  +   V      P    ++VKD  +I R             HAEV 
Sbjct: 26  VNERDYGFLSKAVEEAYEGVRCGDGGP-FGAVVVKDDQIIVRCHNMVLKNMDPTAHAEVT 84

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           A+ EA ++           Y + EPC      P C   I    ++R+V        
Sbjct: 85  AVREACKKLERYDLSDCEIYASCEPC------PMCFGAIHLSKMKRLVYGAQAEAA 134


>gi|160947203|ref|ZP_02094370.1| hypothetical protein PEPMIC_01136 [Parvimonas micra ATCC 33270]
 gi|158446337|gb|EDP23332.1| hypothetical protein PEPMIC_01136 [Parvimonas micra ATCC 33270]
          Length = 141

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 55/150 (36%), Gaps = 35/150 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV---------------TA 48
            ++  FM  A   +      T     V C++V KD  +I  G                T 
Sbjct: 4   PWEEYFMDLAKMVATRG---TCDRAYVGCVLVNKDNRIISTGYNGSISGNPQCDEIGHTM 60

Query: 49  YGG----CPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
             G      HAE  AL      G + +G T YVT  PC +      C + +I+ GI ++ 
Sbjct: 61  RDGHCIATIHAEQNALLYCAREGIKVKGCTCYVTHFPCLN------CTKALIQAGISKIY 114

Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
               +   R+    ++ L +  I   ++ E
Sbjct: 115 Y---ENSYRMDEYAIELLERNKIEYIKIGE 141


>gi|149013222|ref|ZP_01834008.1| transcriptional regulator, TetR family protein [Streptococcus
           pneumoniae SP19-BS75]
 gi|147762973|gb|EDK69918.1| transcriptional regulator, TetR family protein [Streptococcus
           pneumoniae SP19-BS75]
          Length = 346

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 54/149 (36%), Gaps = 33/149 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
           ++D  F + AL  +      T     V  ++VKD  VI  G      G            
Sbjct: 198 AWDEYFAAQALLIANRS---TCKRAKVGAILVKDNKVISTGYNGSVSGTEHCIDHECLVI 254

Query: 54  --------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                   HAEV A+ +  E    +G TAYVT  PC +      C + +++ G +RVV  
Sbjct: 255 EGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLN------CTKQLLQVGCKRVVYI 308

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
                 R+         +KG  +  +   
Sbjct: 309 NQY---RMDDYAQYLYQEKGTELTHLPLE 334


>gi|108763474|ref|YP_633568.1| putative guanine deaminase [Myxococcus xanthus DK 1622]
 gi|108467354|gb|ABF92539.1| putative guanine deaminase [Myxococcus xanthus DK 1622]
          Length = 153

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 42/120 (35%), Gaps = 25/120 (20%)

Query: 1   MPVSSFDARFMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCP 53
           M  S+    FM  A+  +R      G          L+V+DG VI R V           
Sbjct: 1   MERSA--EEFMREAIALARTNVKSGGR-----PFGALLVRDGRVIARAVNEVNQTKDPTA 53

Query: 54  HAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+ A+  A +        G   Y +  PC      P C   +  CGI+       + +
Sbjct: 54  HAELLAIRNASQSLGSASLSGCVVYASGHPC------PMCLAAMYLCGIQGAYFAYSNEE 107


>gi|170744112|ref|YP_001772767.1| CMP/dCMP deaminase zinc-binding [Methylobacterium sp. 4-46]
 gi|168198386|gb|ACA20333.1| CMP/dCMP deaminase zinc-binding [Methylobacterium sp. 4-46]
          Length = 158

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 44/127 (34%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            V   IV+DG V+        T      HAE+ A+  A      E   G   YVTLEPC 
Sbjct: 33  PVGAAIVRDGTVLAVAGNRPRTLRDPTAHAEILAIRAACRAIGDERLIGCDLYVTLEPCG 92

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGK 135
                  CA  I    +RR+     DP       G ++           +   + ESE  
Sbjct: 93  M------CAAAISLARLRRLYFAAADPKGGAVEHGPRFFAQPTCHHAPEVYGGLRESEAA 146

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 147 SLLREFF 153


>gi|323490043|ref|ZP_08095264.1| ComE operon protein 2 [Planococcus donghaensis MPA1U2]
 gi|323396339|gb|EGA89164.1| ComE operon protein 2 [Planococcus donghaensis MPA1U2]
          Length = 190

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 62/160 (38%), Gaps = 34/160 (21%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M   ++D  FM+ +   +      T T  +V   IV+D  ++  G      GG       
Sbjct: 1   MKRITWDQFFMAQSHLLALRS---TCTRLAVGATIVRDRRIMAGGYNGSISGGDHCIDKG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G    GA  YV+  PC        C + II+ GI 
Sbjct: 58  CYVVDGHCVRTIHAEMNALLQCSKYGVSVNGADMYVSHFPCLQ------CTKSIIQAGIA 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138
           R+    D  +   +   ++ L Q G+ V ++M  E KI  
Sbjct: 112 RLYYASDYKNHEYA---IELLEQAGVEVVQVMFDERKIDF 148


>gi|293364019|ref|ZP_06610755.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Mycoplasma alligatoris A21JP2]
 gi|292552509|gb|EFF41283.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Mycoplasma alligatoris A21JP2]
          Length = 158

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 56/148 (37%), Gaps = 34/148 (22%)

Query: 5   SFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGI-VIGRGV---------------- 46
           ++D  F    +  ++   +     +  V   I+ D   VIG G                 
Sbjct: 6   NWDTYF----ISLAKISALRSKDPSTQVGACIINDEKKVIGLGYNGMPNGNDIDFPWGRD 61

Query: 47  ------TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                 T Y    HAEV A+  A  + +GA  Y TL PC +      CA+ I++ GI+ V
Sbjct: 62  SKIAKETKYPYVVHAEVNAILNAIVQPKGAIIYTTLYPCIN------CAKVIVQSGIKEV 115

Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           V   D       G   ++L +K  I  R
Sbjct: 116 VFEDDKYKDTEDGEMARYLFEKCNIKTR 143


>gi|160901692|ref|YP_001567273.1| CMP/dCMP deaminase zinc-binding [Petrotoga mobilis SJ95]
 gi|160359336|gb|ABX30950.1| CMP/dCMP deaminase zinc-binding [Petrotoga mobilis SJ95]
          Length = 169

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 48/134 (35%), Gaps = 39/134 (29%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP---------- 53
            +D  FM  A   S+     T  +  V  +IVK+  ++  G      G P          
Sbjct: 27  DWDKYFMEVADLVSKRS---TCLHRKVGAVIVKEKRILATGYNQPPSGFPHCDDIGCIRD 83

Query: 54  ----------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  AL +A   G     A+ Y+T +PCS       CA+ +I 
Sbjct: 84  DLGIKSGENQEICYGLHAEQNALMQAAKFGISTDNASIYITHQPCSV------CARLVIN 137

Query: 95  CGIRRVVVCVDDPD 108
            GI+ V      PD
Sbjct: 138 AGIKNVYYREGYPD 151


>gi|110632788|ref|YP_672996.1| CMP/dCMP deaminase, zinc-binding [Mesorhizobium sp. BNC1]
 gi|110283772|gb|ABG61831.1| CMP/dCMP deaminase, zinc-binding protein [Chelativorans sp. BNC1]
          Length = 171

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 46/127 (36%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            V  ++V+DG ++               HAE+ A+  A      E   GA  YVTLEPC+
Sbjct: 46  PVGAVVVRDGRLLASAGNRTRELNDPTAHAEMLAIRAACEAEGAERLIGADLYVTLEPCA 105

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGK 135
                  CA  I    IRR+     DP       G ++           + + + E E  
Sbjct: 106 M------CAGAISFARIRRLYFGASDPKGGGVIHGGRFFTQPTCHHAPEVYEGLGEREAA 159

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 160 TLLKNFF 166


>gi|323358758|ref|YP_004225154.1| cytosine/adenosine deaminase [Microbacterium testaceum StLB037]
 gi|323275129|dbj|BAJ75274.1| cytosine/adenosine deaminase [Microbacterium testaceum StLB037]
          Length = 183

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 46/128 (35%), Gaps = 21/128 (16%)

Query: 30  SVACLIVKD-GIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPC 79
            V  ++V   G V G G            HAEV AL  A E        G T  VTLEPC
Sbjct: 55  PVGAVVVDASGTVRGEGRNLREATHDPTAHAEVVALRRAAESLGTWHLAGCTLVVTLEPC 114

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS-----QKGIIVDRMMESEG 134
                   CA  +++  + RVV    D     +G     L       +  +V  + E E 
Sbjct: 115 ------VMCAGAVLQARVPRVVFGAWDAKAGAAGSMYDVLRDRRLPHRVEVVGGVAEGEA 168

Query: 135 KIFLHAYL 142
              L A+ 
Sbjct: 169 STRLRAFF 176


>gi|320353809|ref|YP_004195148.1| tRNA-adenosine deaminase [Desulfobulbus propionicus DSM 2032]
 gi|320122311|gb|ADW17857.1| tRNA-adenosine deaminase [Desulfobulbus propionicus DSM 2032]
          Length = 146

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 49/148 (33%), Gaps = 22/148 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACL-IVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE 65
           M  AL  +R      +    V  + I   G ++        G      HAE+  L  A +
Sbjct: 4   MRRALVQARQAA--EAGEVPVGAVAIDAQGAILAEAGNNCIGASDPSGHAEMVVLRRAAQ 61

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-- 118
                   G T YVTLEPC      P CA  ++   I R+V    DP         +   
Sbjct: 62  VVGNYRLPGLTLYVTLEPC------PMCAALMVHARIARLVFGATDPKGGAIVSKYRIGS 115

Query: 119 --LSQKGIIVDRMMESEGKIFLHAYLTR 144
             L   G  V   + +E    L     R
Sbjct: 116 DGLLNHGFSVTGGVCAEECGNLLRDFFR 143


>gi|312136100|ref|YP_004003438.1| cmp/dcmp deaminase zinc-binding protein [Caldicellulosiruptor
           owensensis OL]
 gi|311776151|gb|ADQ05638.1| CMP/dCMP deaminase zinc-binding protein [Caldicellulosiruptor
           owensensis OL]
          Length = 143

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 17/124 (13%)

Query: 30  SVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCSHYG 83
            VA  +VKDG +I      +     HAE+ A+ +A      ++ R    +VT EPC    
Sbjct: 21  PVAAAVVKDGKIISIKRNDSKKAIYHAEILAIIDATSKLSTKDLRSCEMFVTKEPC---- 76

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGKIFL 138
             P C   I+   ++R+     D  +  +           L+ K  ++  + E E ++ L
Sbjct: 77  --PMCMSAIVLSKVKRLYFGARDFKMGAAESCFNLSQHPFLNHKVEVIGGICEDECRLLL 134

Query: 139 HAYL 142
             + 
Sbjct: 135 KRFF 138


>gi|302872756|ref|YP_003841392.1| CMP/dCMP deaminase zinc-binding [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302575615|gb|ADL43406.1| CMP/dCMP deaminase zinc-binding [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 143

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 17/124 (13%)

Query: 30  SVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCSHYG 83
            VA  +VKDG +I      +     HAE+ A+ +A      ++ R    +VT EPC    
Sbjct: 21  PVAAAVVKDGKIISIKRNDSKKAIYHAEILAIIDATSKLSTKDLRSCEMFVTKEPC---- 76

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGKIFL 138
             P C   I+   ++R+     D  +  +           L+ K  ++  + E E ++ L
Sbjct: 77  --PMCMSAIVLSKVKRLYFGARDFKMGAAESCFNLSQNPFLNHKVEVIGGICEDECRLLL 134

Query: 139 HAYL 142
             + 
Sbjct: 135 KRFF 138


>gi|288906089|ref|YP_003431311.1| competence protein ComEB required for DNA binding and uptake
           [Streptococcus gallolyticus UCN34]
 gi|306832128|ref|ZP_07465282.1| competence protein ComEB [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325979054|ref|YP_004288770.1| competence protein ComEB [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288732815|emb|CBI14391.1| putative competence protein ComEB required for DNA binding and
           uptake [Streptococcus gallolyticus UCN34]
 gi|304425567|gb|EFM28685.1| competence protein ComEB [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325178982|emb|CBZ49026.1| competence protein ComEB [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 154

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 53/147 (36%), Gaps = 34/147 (23%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------------- 53
            FM+ A   S+     T     V  ++VKD  +I  G                       
Sbjct: 10  YFMANAELISKRS---TCDRAFVGAVLVKDNRIIATGYNGGVSETDNCNEVGHKMEDGHC 66

Query: 54  ----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               HAE+ AL +    G   +G   YVT  PC +      C + +++ GI+++      
Sbjct: 67  IRTVHAEMNALIQCAKEGISTKGTEIYVTHFPCIN------CTKALLQAGIKKITY---K 117

Query: 107 PDVRVSGRGLQWLSQKGIIVDRMMESE 133
              R+    ++ + QKG+   +    E
Sbjct: 118 TAYRMHPFAIELMEQKGVEYVQHDVPE 144


>gi|239832713|ref|ZP_04681042.1| CMP/dCMP deaminase zinc-binding [Ochrobactrum intermedium LMG 3301]
 gi|239824980|gb|EEQ96548.1| CMP/dCMP deaminase zinc-binding [Ochrobactrum intermedium LMG 3301]
          Length = 156

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 42/116 (36%), Gaps = 25/116 (21%)

Query: 5   SFDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
           S D  F+  A++ +        G          ++VK G VI  GV           HAE
Sbjct: 2   SSDGTFLDQAIKLAFDNIEQG-GR-----PFGAVVVKGGEVIATGVNRMQADCDPTAHAE 55

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           + AL  AG+  R     G   Y + +PC      P C   +   G+ ++     + 
Sbjct: 56  LLALRAAGKALRSPRLDGCEVYASGQPC------PMCFAAMRMAGVEKIRFAYSNE 105


>gi|224036452|pdb|2W4L|A Chain A, Human Dcmp Deaminase
 gi|224036453|pdb|2W4L|B Chain B, Human Dcmp Deaminase
 gi|224036454|pdb|2W4L|C Chain C, Human Dcmp Deaminase
 gi|224036455|pdb|2W4L|D Chain D, Human Dcmp Deaminase
 gi|224036456|pdb|2W4L|E Chain E, Human Dcmp Deaminase
 gi|224036457|pdb|2W4L|F Chain F, Human Dcmp Deaminase
          Length = 178

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 35/146 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        N  V   IV  +  ++G G                  
Sbjct: 11  EWPEYFMAVAFLSAQRSK---DPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRT 67

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G + YV L PC+       CA+ II+ GI+ 
Sbjct: 68  AENKLDTKYPYVCHAELNAIMNKNLTDVKGCSMYVALFPCNE------CAKLIIQAGIKE 121

Query: 100 VVVCVD-DPDVRVSGRGLQWLSQKGI 124
           V+   D   D   +       +  G+
Sbjct: 122 VIFMSDKYHDSDEATAARLLFNMAGV 147


>gi|12654885|gb|AAH01286.1| DCMP deaminase [Homo sapiens]
          Length = 178

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 35/146 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        N  V   IV  +  ++G G                  
Sbjct: 14  EWPEYFMAVAFLSAQRSK---DPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRT 70

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G + YV L PC+       CA+ II+ GI+ 
Sbjct: 71  AENKLDTKYPYVCHAELNAIMNKNLTDVKGCSMYVALFPCNE------CAKLIIQAGIKE 124

Query: 100 VVVCVD-DPDVRVSGRGLQWLSQKGI 124
           V+   D   D   +       +  G+
Sbjct: 125 VIFMSDKYHDSDEATAARLLFNMAGV 150


>gi|306834244|ref|ZP_07467363.1| competence protein ComEB [Streptococcus bovis ATCC 700338]
 gi|304423593|gb|EFM26740.1| competence protein ComEB [Streptococcus bovis ATCC 700338]
          Length = 155

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 53/147 (36%), Gaps = 34/147 (23%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------------- 53
            FM+ A   S+     T     V  ++VKD  +I  G                       
Sbjct: 11  YFMANAELISKRS---TCDRAFVGAVLVKDNRIIATGYNGGVSETDNCNEVGHKMEDGHC 67

Query: 54  ----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               HAE+ AL +    G   +G   YVT  PC +      C + +++ GI+++      
Sbjct: 68  IRTVHAEMNALIQCAKEGISTKGTEIYVTHFPCIN------CTKALLQAGIKKITY---K 118

Query: 107 PDVRVSGRGLQWLSQKGIIVDRMMESE 133
              R+    ++ + QKG+   +    E
Sbjct: 119 TAYRMHPFAIELMEQKGVEYVQHDVPE 145


>gi|254443834|ref|ZP_05057310.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198258142|gb|EDY82450.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 174

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 8/95 (8%)

Query: 266 NIIYCDCRDLKKLLTILVGRGVTS--LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           +++        ++L  L  RG     LL  GG  +   F+++ LVD + +    ++ G G
Sbjct: 84  DLVEFTSAPPDEILAELAKRGRNKTALL--GGGEIYTRFLSAGLVDELWITIEPLLFGAG 141

Query: 324 GIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIGK 357
              +PL    LE  F        G + + L+Y+ +
Sbjct: 142 ---TPLLSQPLELQFKLHSSAPLGKNALLLKYLPQ 173


>gi|197335735|ref|YP_002156494.1| riboflavin biosynthesis protein RibD C- domain protein [Vibrio
           fischeri MJ11]
 gi|197317225|gb|ACH66672.1| riboflavin biosynthesis protein RibD C- domain protein [Vibrio
           fischeri MJ11]
          Length = 177

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 5/79 (6%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           +LK++L  +  +G  +L ++GG     +F+   L+D +I+    +++G G   SPL  G 
Sbjct: 95  ELKEVLNEIHAKGFKNLYIDGGVT-IQNFLKEDLIDELIITTIPVLLGGG---SPLFAGL 150

Query: 334 LEK-NFMCVRRDYFGSDVC 351
            +  NF  V+ + F S + 
Sbjct: 151 EQPLNFKFVKSETFLSAIV 169


>gi|312792797|ref|YP_004025720.1| cmp/dcmp deaminase zinc-binding protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312878594|ref|ZP_07738458.1| CMP/dCMP deaminase zinc-binding [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311794629|gb|EFR11094.1| CMP/dCMP deaminase zinc-binding [Caldicellulosiruptor lactoaceticus
           6A]
 gi|312179937|gb|ADQ40107.1| CMP/dCMP deaminase zinc-binding protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 143

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 17/124 (13%)

Query: 30  SVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCSHYG 83
            VA  +VKDG ++      +     HAE+ A+ +A      ++ R    +VT EPC    
Sbjct: 21  PVAAAVVKDGKIVSIKRNDSKKAIYHAEILAIIDATSKLSTKDLRSCEMFVTKEPC---- 76

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGKIFL 138
             P C   I+   ++R+     D  +  +           L+ K  ++  + E E ++ L
Sbjct: 77  --PMCMSAIVLSKVKRLYFGARDFKMGAAESCFNLSQHPFLNHKVEVIGGICEDECRLLL 134

Query: 139 HAYL 142
             + 
Sbjct: 135 KRFF 138


>gi|225874834|ref|YP_002756293.1| guanine deaminase [Acidobacterium capsulatum ATCC 51196]
 gi|225793201|gb|ACO33291.1| guanine deaminase [Acidobacterium capsulatum ATCC 51196]
          Length = 162

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 36/102 (35%), Gaps = 16/102 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65
           F+  A+  +  +V      P    +IV++  V+        T      HAEV A+  A  
Sbjct: 12  FLRRAIALALENVQAGKGGP-FGAVIVREDKVVAEAANSVFTTNDPTAHAEVNAIRAACR 70

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                E RG   Y + EPC      P C        + R+  
Sbjct: 71  NLGVFELRGCVIYTSSEPC------PMCLAACYWAHLDRIYF 106


>gi|255540237|ref|XP_002511183.1| deoxycytidylate deaminase, putative [Ricinus communis]
 gi|223550298|gb|EEF51785.1| deoxycytidylate deaminase, putative [Ricinus communis]
          Length = 224

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 57/156 (36%), Gaps = 39/156 (25%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
           S+D  FM+ A   +         N  V   +V ++G+++G G                  
Sbjct: 63  SWDDYFMAIAFLSAERSK---DPNRQVGACLVSQNGVILGIGYNGFPRGCSDDKLPWAKK 119

Query: 47  --------TAYGGCPHAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                   T Y    HAEV A+       A G   YVT+ PC+       CA+ II+ G+
Sbjct: 120 SKTGNPLETKYPYVCHAEVNAILNTNHASAAGQKLYVTMFPCNE------CAKIIIQSGV 173

Query: 98  RRVVVCVDDPDVRVSGRGL---QWLSQKGIIVDRMM 130
             V+  V+          +   + LS  GI V R  
Sbjct: 174 SEVIYFVEKNLSNSETAYIASHKLLSMAGIKVRRHQ 209


>gi|313633202|gb|EFS00080.1| ComE operon protein 2 [Listeria seeligeri FSL N1-067]
 gi|313637784|gb|EFS03135.1| ComE operon protein 2 [Listeria seeligeri FSL S4-171]
          Length = 186

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 62/173 (35%), Gaps = 40/173 (23%)

Query: 1   MPVSSFDARFMSAALRFSRWHV---GLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP--- 53
           M   ++D  FM      ++ H+     T T   V   IV+D  +I  G      G     
Sbjct: 1   MQRIAWDQFFM------AQSHLISSRSTCTRLMVGATIVRDKRIIAGGYNGSIAGGDHCA 54

Query: 54  ---------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                          HAE+ A+ +    G     A  YVT  PC        C + II+ 
Sbjct: 55  EHGCYVVDGHCIRTIHAEMNAILQCAKFGATTDQAELYVTHFPCL------ACTKSIIQA 108

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
           GI++V    D  +   +   L+     G+ + ++   E  + ++ +   ++  
Sbjct: 109 GIKKVYFAKDYKNHSYA---LELFEIAGVDLQKVEFDESVLQVNNWNEEKMHT 158


>gi|224370212|ref|YP_002604376.1| hypothetical protein HRM2_31290 [Desulfobacterium autotrophicum
           HRM2]
 gi|223692929|gb|ACN16212.1| conserved hypothetical protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 167

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 53/158 (33%), Gaps = 43/158 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D  FM  A   +     L      V  ++VK+  ++  G                   
Sbjct: 20  SWDVYFMDIARLVATRATCLRRK---VGAILVKERRILCSGYNGAPTHVPHCDVTGCLRE 76

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G   +G+T Y T +PCS       CA+ II 
Sbjct: 77  QLNVPSGQKHELCRGVHAEQNAIIQAAYHGISVKGSTLYCTHKPCSI------CAKMIIN 130

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
            GI +V       D           +Q GI + ++ + 
Sbjct: 131 AGIVQVCFATGYDDSMSET----MFAQAGIEITQITDE 164


>gi|148242392|ref|YP_001227549.1| tRNA-specific adenosine deaminase [Synechococcus sp. RCC307]
 gi|147850702|emb|CAK28196.1| tRNA-specific adenosine deaminase [Synechococcus sp. RCC307]
          Length = 183

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 45/122 (36%), Gaps = 16/122 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE 65
           +M   LR +    G     P  A +I   G  IG G            HAE+ AL +A  
Sbjct: 27  WMDRLLRLAAKA-GQRGEVPVAAVVIDPLGRAIGWGSNRREAAQDPLGHAELVALRQASS 85

Query: 66  EARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             R       T  VTLEPC      P CA  +++  + RVV    DP     G  L   +
Sbjct: 86  LRRDWRFNQHTLLVTLEPC------PMCAGALVQARMGRVVFGASDPKRGALGGCLNLST 139

Query: 121 QK 122
             
Sbjct: 140 DA 141


>gi|186476063|ref|YP_001857533.1| CMP/dCMP deaminase zinc-binding [Burkholderia phymatum STM815]
 gi|184192522|gb|ACC70487.1| CMP/dCMP deaminase zinc-binding [Burkholderia phymatum STM815]
          Length = 213

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 42/127 (33%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE---------EARGATAYVTLEPCS 80
            V  ++V+   VI +G     G       A   A              G   YVTLEPC 
Sbjct: 62  PVGAVLVRGDEVIAKGFNHPIGGHDPSAHAEMAALRAAALTLENYRLPGCELYVTLEPCL 121

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  CA  I+   I RVV    DP     G  +       L+    +   ++E E  
Sbjct: 122 M------CAGAIMHARIARVVYGARDPKTGACGSVVDAFANTQLNHHTTVTGGVLEEECA 175

Query: 136 IFLHAYL 142
             L A+ 
Sbjct: 176 AALRAFF 182


>gi|58617315|ref|YP_196514.1| hypothetical protein ERGA_CDS_05880 [Ehrlichia ruminantium str.
           Gardel]
 gi|58416927|emb|CAI28040.1| Conserved hypothetical protein (putative cytidine deaminase)
           [Ehrlichia ruminantium str. Gardel]
          Length = 145

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 50/147 (34%), Gaps = 22/147 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA-- 63
           +M  A+  ++           V  +IV +G VI     +         HAE+ ++  A  
Sbjct: 6   YMRLAIGKAQEDCLEV----PVGAVIVYNGKVISCQSNSNIKNCDPTAHAEILSIRHACI 61

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD---VRVSGRGLQ 117
                       YVTLEPC+       CAQ I    IRR+     +     +    R   
Sbjct: 62  VLSTHILNQCDMYVTLEPCAM------CAQAISFARIRRLYFGAYNKKYGGIENGARVFH 115

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTR 144
           +      +   ++E E    +  +  R
Sbjct: 116 FCHSVPEVYGGILEEENIRLMTDFFKR 142


>gi|322385723|ref|ZP_08059367.1| competence protein comEB [Streptococcus cristatus ATCC 51100]
 gi|321270461|gb|EFX53377.1| competence protein comEB [Streptococcus cristatus ATCC 51100]
          Length = 156

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 30/119 (25%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
           ++D  F + AL  +      T     V  ++VKD  VI  G      G            
Sbjct: 8   AWDEYFAAQALLIANRS---TCKRAKVGAVLVKDNKVISTGYNGSVSGTEHCIDHECLVI 64

Query: 54  --------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAEV A+ +  E    +G TAYVT  PC +      C + +++ G +RVV 
Sbjct: 65  DGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLN------CTKQLLQVGCKRVVY 117


>gi|209734934|gb|ACI68336.1| Deoxycytidylate deaminase [Salmo salar]
          Length = 196

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 55/146 (37%), Gaps = 35/146 (23%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV--------------------- 46
            FM+ A   ++        +  V   IV ++  ++G G                      
Sbjct: 35  YFMAVAFLSAQRSK---DPSSQVGACIVNRENKIVGIGYNGMPNGCDDDLLPWSCSANDR 91

Query: 47  --TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
             T Y    HAE+ A+  +   + +G + YV L PC+       CA+ II+ GI+ V+  
Sbjct: 92  LDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNE------CAKLIIQAGIKDVIYL 145

Query: 104 VD-DPDVRVSGRGLQWLSQKGIIVDR 128
            D   D+       + L+  GI   +
Sbjct: 146 SDKYHDIPEMTASRRLLNLAGIEYKQ 171


>gi|315500440|ref|YP_004089243.1| cmp/dcmp deaminase zinc-binding protein [Asticcacaulis excentricus
           CB 48]
 gi|315418452|gb|ADU15092.1| CMP/dCMP deaminase zinc-binding protein [Asticcacaulis excentricus
           CB 48]
          Length = 162

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 51/152 (33%), Gaps = 24/152 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAY----GGCPHAEVQAL 60
           D   M  AL  +       +    +  LI       +I R   A         HAE+ AL
Sbjct: 3   DKTLMRLALDEAEKAAQ--AGEVPIGALIYDPSSKTIIARAKNAPIKLNDPSAHAEILAL 60

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
             AG+            YVTLEPC        CA  +    I RV+    DP       G
Sbjct: 61  RAAGQVVGNYRLTDLWIYVTLEPC------VMCAGALSHARIGRVIYGASDPKGGAVESG 114

Query: 116 LQWLSQ-----KGIIVDRMMESEGKIFLHAYL 142
            ++ +Q        +   ++E+E    L  + 
Sbjct: 115 PRFFAQPTCHWAPEVTGGVLEAETGQVLKDFF 146


>gi|181537|gb|AAA35755.1| deoxycytidylate deaminase [Homo sapiens]
          Length = 178

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 35/146 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        N  V   IV  +  ++G G                  
Sbjct: 14  EWPEYFMAVAFLSAQRSK---DPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRT 70

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G + YV L PC+       CA+ II+ GI+ 
Sbjct: 71  AENKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNE------CAKLIIQAGIKE 124

Query: 100 VVVCVD-DPDVRVSGRGLQWLSQKGI 124
           V+   D   D   +       +  G+
Sbjct: 125 VIFTSDKYHDSDEATAARLLFNMAGV 150


>gi|326792204|ref|YP_004310025.1| dCMP deaminase [Clostridium lentocellum DSM 5427]
 gi|326542968|gb|ADZ84827.1| dCMP deaminase [Clostridium lentocellum DSM 5427]
          Length = 169

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 54/157 (34%), Gaps = 41/157 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV--------KDGIVIGRGV---------- 46
           S+D  FM  AL  ++        +  V   IV         +  ++  G           
Sbjct: 8   SWDDYFMGIALLAAKRSK---DPSTQVGACIVSGASHDSANENTILSVGYNGLPLGCSDD 64

Query: 47  ---TAYGGC---------PHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFII 93
                  G           HAE+ A+  A G+   GA  YV L PC+       C + II
Sbjct: 65  EFPWERDGDFLDTKYPFVVHAELNAILNARGKSLVGARIYVALFPCNE------CCKAII 118

Query: 94  ECGIRRVVVCVDDP-DVRVSGRGLQWLSQKGIIVDRM 129
           +CGI+ V+   D   D        +     G+ + ++
Sbjct: 119 QCGIKEVIYLSDKYADTDAVKASKKMFEAAGVKLTQL 155


>gi|291561900|emb|CBL40703.1| Deoxycytidylate deaminase [butyrate-producing bacterium SS3/4]
          Length = 162

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 54/150 (36%), Gaps = 35/150 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGC----------- 52
           ++D  FM  A + S   +     N  V   IV  D  ++  G   +              
Sbjct: 10  TWDEYFMGVA-KLS--AMRSKDPNTQVGACIVSEDNKILSMGYNGFPKGCSDDEFPWDKM 66

Query: 53  ------------PHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                        H+E+ A+    G    G+  YVTL PC+       CA+ II+ GI+ 
Sbjct: 67  DEDPYNRKYFYVTHSELNAILNYRGGSLEGSKLYVTLFPCNE------CAKAIIQAGIQT 120

Query: 100 VVVCVDDP-DVRVSGRGLQWLSQKGIIVDR 128
           +V   D   +   +    + L+  G+   +
Sbjct: 121 IVYESDKYANDASTRASKRMLNAAGVRYYQ 150


>gi|119718363|ref|YP_925328.1| cytosine deaminase [Nocardioides sp. JS614]
 gi|119539024|gb|ABL83641.1| Cytosine deaminase [Nocardioides sp. JS614]
          Length = 154

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 52/151 (34%), Gaps = 20/151 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEE 62
           D   +  A+  +R   GL      +  +++ DG V+G G            H E   LE 
Sbjct: 3   DEEMLVLAVEEARR--GLAEGGIPIGAVLIHDGEVLGGGHNRRVQLGSAIRHGETDCLEN 60

Query: 63  AGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            G         +T   TL PC        C   I+  GI RVVV  +   +       + 
Sbjct: 61  IGRLPASVYARSTMVTTLSPCDM------CTGAILLYGIPRVVVGENRNFLGGE----EL 110

Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           L+ +G+ V  + +      +  ++       
Sbjct: 111 LASRGVEVVVLDDLGCVEMMATFIAEHPTLW 141


>gi|152971489|ref|YP_001336598.1| putative bifunctional deaminase-reductase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150956338|gb|ABR78368.1| putative bifunctional deaminase-reductase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
          Length = 178

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 8/79 (10%)

Query: 252 DDPVLALAFRKKNINI-------IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           D PVL L+ +  N  +       +   CR  ++ LT L+ + V  + ++GG  +  SF+ 
Sbjct: 67  DRPVLVLSRQLTNTPVPEALKGKVQFSCRTPREALTDLMEKNVHRVYIDGG-QLIQSFLR 125

Query: 305 SRLVDSIILYRSQIVIGEG 323
             LVD I++    +++G G
Sbjct: 126 EGLVDDIVITTVPVLLGSG 144


>gi|86157977|ref|YP_464762.1| zinc-binding CMP/dCMP deaminase [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|197122718|ref|YP_002134669.1| CMP/dCMP deaminase zinc-binding [Anaeromyxobacter sp. K]
 gi|220917501|ref|YP_002492805.1| CMP/dCMP deaminase zinc-binding [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|85774488|gb|ABC81325.1| zinc-binding CMP/dCMP deaminase [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|196172567|gb|ACG73540.1| CMP/dCMP deaminase zinc-binding [Anaeromyxobacter sp. K]
 gi|219955355|gb|ACL65739.1| CMP/dCMP deaminase zinc-binding [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 164

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 45/129 (34%), Gaps = 31/129 (24%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
           S+D  FM+ A   +      T     V  ++V+D  ++  G                   
Sbjct: 6   SWDEYFMNVARVVATRA---TCDRKHVGAVLVRDKTILSTGYNGSIRGLPHCSEAGHMME 62

Query: 48  --AYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  A+ +A   G    GA+ Y T  PC       PC + I   G RR+V 
Sbjct: 63  DGHCVATVHAEANAIIQAAKNGVAIEGASIYTTASPCW------PCFKLIANAGCRRIVF 116

Query: 103 CVDDPDVRV 111
                D R+
Sbjct: 117 GEFYRDARI 125


>gi|229086897|ref|ZP_04219056.1| ComE operon protein 2 [Bacillus cereus Rock3-44]
 gi|228696407|gb|EEL49233.1| ComE operon protein 2 [Bacillus cereus Rock3-44]
          Length = 185

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 54/154 (35%), Gaps = 34/154 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M   S+D  FM+ +   S      T T  +V   IV+D  +I  G      GG       
Sbjct: 1   MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +   A  YVT  PC        C + II+ GI 
Sbjct: 58  CYVIDNHCVRTIHAEMNALLQCAKFGVKTEDAEIYVTHFPCLQ------CCKAIIQSGIT 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
            V    D  +   +   ++   Q  + V  +   
Sbjct: 112 AVYYARDYKNHPYA---VELFEQANVTVKHVPLE 142


>gi|308160868|gb|EFO63335.1| Cytosine deaminase, putative [Giardia lamblia P15]
          Length = 165

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 59/178 (33%), Gaps = 25/178 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEE--A 63
           M    + +   + L      V C IV  DG ++  G  A         HAE+ AL +  +
Sbjct: 1   MEECFKEA--SLALVEREVPVGCAIVDSDGHILATGRNATNKTRNSTYHAELVALAQLPS 58

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           G        YVT+EPC        CA  +   G+  ++    +                G
Sbjct: 59  GINLSNCVLYVTIEPCIM------CAAALSIVGLTNIIYFARNNKFGGC----------G 102

Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
            ++D     E             E+  ++  +    ++ MI     G+  I   +++ 
Sbjct: 103 SVLDVNNHIESPWTKLNAKYIHDERAIYLLQEFFERKNPMIVTPNHGTDEIDCCLNRK 160


>gi|332666596|ref|YP_004449384.1| CMP/dCMP deaminase zinc-binding protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332335410|gb|AEE52511.1| CMP/dCMP deaminase zinc-binding protein [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 137

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 44/121 (36%), Gaps = 17/121 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA-- 63
           F       +     L   NP V  ++++DG++I  G     ++     HAE++A+  A  
Sbjct: 9   FFLRCHELAATSAEL--GNPPVGAVLIRDGLIIAEGLELARSSGDVTRHAEIEAIRAAVH 66

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                +        T EPC        CA  I    IRRVV  +  P V         LS
Sbjct: 67  ILKTSDLSDCELITTHEPC------VMCAYAIRHYRIRRVVYELAVPTVGGVSSKFPVLS 120

Query: 121 Q 121
            
Sbjct: 121 D 121


>gi|281351029|gb|EFB26613.1| hypothetical protein PANDA_000408 [Ailuropoda melanoleuca]
          Length = 158

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 37/104 (35%), Gaps = 21/104 (20%)

Query: 30  SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA-----------GEEARGATAYV 74
            V CL+V +  V+G+G            HAE+ A+++A            E       YV
Sbjct: 11  PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQALDWCHRSGKSPSEVFEHTVLYV 70

Query: 75  TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           T+EPC        CA  +    I  VV    +      G  L  
Sbjct: 71  TVEPCIM------CAAALRLMKIPLVVYGCQNERFGGCGSVLNI 108


>gi|220905293|ref|YP_002480605.1| CMP/dCMP deaminase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869592|gb|ACL49927.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 195

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 41/119 (34%), Gaps = 18/119 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG----CPHAEVQALEEAGE 65
           M  AL  +R    L      V  ++V  DG V+     A         HAE+ AL  AG+
Sbjct: 45  MDRALDRARHAAAL--GEVPVGAVLVAPDGRVLAEEGNAPVALSDPTAHAEILALRRAGQ 102

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                   G    VTLEPC+       CA   I   +  +V    D          ++ 
Sbjct: 103 MLGNYRLGGCVLVVTLEPCAM------CAAACIHARLAGLVYGAADDLAGAVVSRAEYF 155


>gi|123449211|ref|XP_001313327.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121895206|gb|EAY00398.1| hypothetical protein TVAG_291040 [Trichomonas vaginalis G3]
          Length = 239

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 63/185 (34%), Gaps = 14/185 (7%)

Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM---RIILDPHFKLSLDSKIIKT-ALL 242
           RA  D+I     TV   + +  C          +    I+++P  KL     +       
Sbjct: 53  RATFDSICTHNETVDLSNMKAECEEGDYIAKRNLDMVAIVVNPKGKLGWKENVAHYWGHD 112

Query: 243 APVI-IVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVG-RGVTSLLVEGGAAV 298
           + +I ++     P      R   I+ I C   D   K + + L     + ++ V+GG  +
Sbjct: 113 SDIIEVLINQSTPQYRNYLRSIGISYIMCGDHDVDWKLMFSKLKNVFNIKAICVQGGGMI 172

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS-----PLEEGYLEKNFMCVRRDYFGSD-VCL 352
             S + + LVD +    +    G     S     P +       F  +     G + V L
Sbjct: 173 NWSLMRTGLVDELSYVIAPTTDGRSTDVSFIRRNPEDTDSPPLEFDLIDVQRVGDNGVWL 232

Query: 353 EYIGK 357
            Y  K
Sbjct: 233 RYAPK 237


>gi|322387410|ref|ZP_08061020.1| cytidine and deoxycytidylate deaminase [Streptococcus infantis ATCC
           700779]
 gi|321141939|gb|EFX37434.1| cytidine and deoxycytidylate deaminase [Streptococcus infantis ATCC
           700779]
          Length = 160

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 53/156 (33%), Gaps = 33/156 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           ++D  F + AL  +      T     V  ++VKD  VI  G                   
Sbjct: 12  AWDEYFAAQALLIANRS---TCKRAKVGAVLVKDNKVISTGYNGSVSGTEHCIDHDCLVI 68

Query: 54  --------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                   HAEV A+ +  E    +G TAYVT  PC +      C + +++ G  RVV  
Sbjct: 69  EGHCVRTLHAEVNAILQGSERGVPKGFTAYVTHFPCLN------CTKQLLQVGCERVVYI 122

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
                   +        +KG  +  +     +  L 
Sbjct: 123 NQYRMDDYAQH---LYQEKGTELTHLPLETVQAALQ 155


>gi|258510212|ref|YP_003183646.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257476938|gb|ACV57257.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 151

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 33/122 (27%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP-------------------HAEVQALEEA---GEEAR 68
           V C++V+D  +I  G                           HAE  AL +    G  A 
Sbjct: 32  VGCVVVRDKRIIASGYNGSIHGDEHCVDVGCKVVDGHCVRAIHAEQNALLQCARFGIAAE 91

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD-PDVRVSGRGLQWLSQKGIIVD 127
           GA  YVT  PC        C + +I+ GIRRV    +  PD       ++ LS+ G++V+
Sbjct: 92  GADLYVTHTPCL------TCTKSLIQAGIRRVFYEFEYRPDPYA----MELLSKAGVVVE 141

Query: 128 RM 129
           ++
Sbjct: 142 QV 143


>gi|157311519|ref|YP_001469562.1| deoxycytidylate deaminase [Enterobacteria phage Phi1]
 gi|149380723|gb|ABR24728.1| Cd dCMP deaminase [Enterobacteria phage Phi1]
          Length = 168

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 50/162 (30%), Gaps = 49/162 (30%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------------- 53
           +M  A   ++    ++     V  LI KDG +I  G                        
Sbjct: 6   YMQIAYLIAKNSKCVSWK---VGALIEKDGRIISTGFNGTPAGQVNCSCHAHKSGWLDDE 62

Query: 54  --------------------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE+ A+     +G    GA+ + T  PC      P CA+
Sbjct: 63  GKMIPEKRPEHSAWSQKNEIHAELNAILFAARSGVSIEGASMWCTASPC------PDCAK 116

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
            I   GI+ +  C D  D          L+   I + R+ + 
Sbjct: 117 AIANSGIKHLYYC-DTYDRNGGRDWADILNNADITITRIPKE 157


>gi|255711598|ref|XP_002552082.1| KLTH0B06776p [Lachancea thermotolerans]
 gi|238933460|emb|CAR21644.1| KLTH0B06776p [Lachancea thermotolerans]
          Length = 335

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 58/158 (36%), Gaps = 36/158 (22%)

Query: 5   SFDARFMSAA-LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG---------GCP- 53
            +D  FM  A L  SR +         V C+IV+D  VI  G              GCP 
Sbjct: 186 DWDTYFMKLATLAASRSNCMKR----RVGCVIVRDCRVIATGYNGTPRHLVNCHSGGCPR 241

Query: 54  --------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                         HAE  AL EAG +  G  A +  + C        C+  I++ GIR 
Sbjct: 242 CNNGDAQLHACLCLHAEENALLEAGRDRVGPNAILYCDTCPCL----TCSVKIVQTGIRE 297

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
           VV        R+     + L + G++V +    E   +
Sbjct: 298 VVYSQSY---RMDEASFKVLQEGGVLVRQFSVLESPRY 332


>gi|168002130|ref|XP_001753767.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695174|gb|EDQ81519.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 191

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 16/113 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
           D  F++ A + +   +      P    +IV+DG ++ +             HAE+ A+++
Sbjct: 38  DYNFLTVAAKEADMAMRKEEGGP-FGAVIVRDGEIVAQAHNEVLKQKDPTAHAEIVAIQK 96

Query: 63  AGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           A ++           Y + EPC      P     +    + R+V         
Sbjct: 97  ACKKLGKIELSDCVIYSSCEPC------PMSFAAMYLARLPRLVYGAQAEAAH 143


>gi|315303230|ref|ZP_07873879.1| ComE operon protein 2 [Listeria ivanovii FSL F6-596]
 gi|313628400|gb|EFR96884.1| ComE operon protein 2 [Listeria ivanovii FSL F6-596]
          Length = 186

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 62/173 (35%), Gaps = 40/173 (23%)

Query: 1   MPVSSFDARFMSAALRFSRWHV---GLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP--- 53
           M   ++D  FM      ++ H+     T T   V   IV+D  +I  G      G     
Sbjct: 1   MQRIAWDQFFM------AQSHLISSRSTCTRLMVGATIVRDKRIIAGGYNGSIAGGDHCA 54

Query: 54  ---------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                          HAE+ A+ +    G     A  YVT  PC        C + II+ 
Sbjct: 55  EHGCYVVDGHCIRTIHAEMNAILQCAKFGATTDQAELYVTHFPCL------ACTKSIIQA 108

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
           GI++V    D  +   +   L+     G+ + ++   E  + ++ +   ++  
Sbjct: 109 GIKKVYFAKDYKNHPYA---LELFELAGVDLQKVEFDESVLQVNNWNEEKMHT 158


>gi|307565561|ref|ZP_07628041.1| guanine deaminase [Prevotella amnii CRIS 21A-A]
 gi|307345720|gb|EFN91077.1| guanine deaminase [Prevotella amnii CRIS 21A-A]
          Length = 155

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 36/112 (32%), Gaps = 25/112 (22%)

Query: 11  MSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           M  A+  S    R   G          +I  +G +I  G            HAE+  +  
Sbjct: 7   MLRAIELSINSVRNGGG------PFGAVISHNGKIIAEGSNKVTINNDPTAHAEISTIRI 60

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           A E+ +     G   Y + EPC      P C   I    + ++    D  D 
Sbjct: 61  ACEKLKTFNLSGCEIYTSCEPC------PMCLGAIYWAHLDKIYYANDRKDA 106


>gi|189218057|ref|YP_001938699.1| Cytosine/adenosine deaminase [Methylacidiphilum infernorum V4]
 gi|189184915|gb|ACD82100.1| Cytosine/adenosine deaminase [Methylacidiphilum infernorum V4]
          Length = 168

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 16/122 (13%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
            ++  AL+ +++        P    ++V     IG              HAE+ A++ A 
Sbjct: 17  YWLRLALKLAQYGSEQGEGGP-FGAVVVLQEEAIGLAHNEVLSRLDPTAHAEILAIQRAA 75

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           +     +  G+  Y + EPC      P C   I   GI +V       DV+  G    +L
Sbjct: 76  KKISHFDLEGSIIYTSCEPC------PMCLSAIYWAGISKVYYACGKEDVQGIGFRDAFL 129

Query: 120 SQ 121
            +
Sbjct: 130 YE 131


>gi|15893208|ref|NP_360922.1| cytosine deaminase [Rickettsia conorii str. Malish 7]
 gi|15620423|gb|AAL03823.1| cytosine deaminase [Rickettsia conorii str. Malish 7]
          Length = 168

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 21/130 (16%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTN-PSVACLIVK--DGIVIGRGVT----AYGGCPHAE 56
           ++F+  FM  AL+ ++        N   V  ++V      +I               HAE
Sbjct: 9   ANFNNFFMEQALKQAKIAF---DKNEVPVGAVVVDRLHQKIIASTHNNTEEKNNALYHAE 65

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ EA      +       YVTLEPC+       CA  I    ++R+     D    V
Sbjct: 66  IIAINEACNLISSKNLNDYDIYVTLEPCAM------CAAAIAHSRLKRLFYGASDSKHGV 119

Query: 112 SGRGLQWLSQ 121
               L++ + 
Sbjct: 120 VESNLRYFNS 129


>gi|159112692|ref|XP_001706574.1| Cytosine deaminase, putative [Giardia lamblia ATCC 50803]
 gi|157434672|gb|EDO78900.1| Cytosine deaminase, putative [Giardia lamblia ATCC 50803]
          Length = 169

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 15/114 (13%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTA----YGGCPHAEVQALEE--A 63
           M    + +   + L      V C IV   G ++  G  A         HAE+ AL +  +
Sbjct: 1   MEECFKEA--SLALAEREVPVGCAIVDSAGRILATGRNATNKTRNSTHHAEIMALAQLPS 58

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           G +      YVT+EPC        CA  +   G+  ++    +      G  L 
Sbjct: 59  GTDLSDCVLYVTIEPCIM------CAAALSIVGLTNIIYFARNSKFGGCGSVLD 106


>gi|312885336|ref|ZP_07745000.1| CMP/dCMP deaminase zinc-binding [Mucilaginibacter paludis DSM
           18603]
 gi|311302187|gb|EFQ79192.1| CMP/dCMP deaminase zinc-binding [Mucilaginibacter paludis DSM
           18603]
          Length = 148

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 38/106 (35%), Gaps = 16/106 (15%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEE-- 66
            A+  S  +V      P    +IVKDG+VI R             HAEV A+  A +E  
Sbjct: 1   MAIELSEHNVQQGQGGP-FGAVIVKDGMVIARSANRVVPQNDPTAHAEVSAIRLACQELQ 59

Query: 67  ---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
                G   Y + EPC      P C   I    I  +    D  D 
Sbjct: 60  SFSLEGCVIYTSCEPC------PMCLGAIYWARINEIYYANDKADA 99


>gi|167765731|ref|ZP_02437784.1| hypothetical protein CLOSS21_00220 [Clostridium sp. SS2/1]
 gi|317497038|ref|ZP_07955366.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167712583|gb|EDS23162.1| hypothetical protein CLOSS21_00220 [Clostridium sp. SS2/1]
 gi|291558932|emb|CBL37732.1| Deoxycytidylate deaminase [butyrate-producing bacterium SSC/2]
 gi|316895698|gb|EFV17852.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 159

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 51/147 (34%), Gaps = 34/147 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV-------------TAYG 50
           S+D  FM  A+  ++        +  V   +V D   ++  G                  
Sbjct: 8   SWDQYFMGIAILSAQRSK---DDHTQVGACLVNDHNKILSVGYNGMPIGCNDDDMPWERE 64

Query: 51  GCP---------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           G P         HAE+ A+   G     GA  YVTL PC+       CA+ II+ G++ V
Sbjct: 65  GDPLHTKYFYVCHAELNAILNYGGGSLDGARVYVTLFPCNE------CAKAIIQSGMKEV 118

Query: 101 VVCVDDPD-VRVSGRGLQWLSQKGIIV 126
           +   D       +    +     G+  
Sbjct: 119 IYMQDKYAGSDTTKASKKMFDMAGVKY 145


>gi|322420509|ref|YP_004199732.1| dCMP deaminase [Geobacter sp. M18]
 gi|320126896|gb|ADW14456.1| dCMP deaminase [Geobacter sp. M18]
          Length = 151

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 56/163 (34%), Gaps = 43/163 (26%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
           M   S+D  F+      ++    L      V  ++VKD  ++  G               
Sbjct: 1   MVRPSWDEYFIEITRLVAKRSTCLRR---QVGAVLVKDKNILATGYNGAPSGTSHCLDIG 57

Query: 47  -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE  A+ +A   G    GAT Y    PC        C++
Sbjct: 58  CLREKMGIPSGERHELCRGLHAEQNAIIQAAKHGTSIEGATLYCNTMPCII------CSK 111

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
            +I  GI+RVV     PD        + + + G++V++  E +
Sbjct: 112 MVINAGIKRVVYLSGYPDQLAE----EMIRESGVLVEKYEEPQ 150


>gi|308813003|ref|XP_003083808.1| cytidine/deoxycytidylate deaminase family protein (ISS)
           [Ostreococcus tauri]
 gi|116055690|emb|CAL57775.1| cytidine/deoxycytidylate deaminase family protein (ISS)
           [Ostreococcus tauri]
          Length = 290

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 49/125 (39%), Gaps = 36/125 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
           S+D  FMS A   ++        N  V   IV +D +++G G                  
Sbjct: 99  SWDDYFMSVAFLSAQRSK---DPNKQVGACIVGEDKLILGVGYNGFPRGCADSALPWAKK 155

Query: 47  --------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                   T Y    HAE+ A+  +      G T YVT+ PC+       CA+ II+ GI
Sbjct: 156 STNGDELETKYPYVCHAEMNAIMNKNSASVAGGTLYVTMYPCNE------CAKLIIQAGI 209

Query: 98  RRVVV 102
           R VV 
Sbjct: 210 REVVY 214


>gi|257052125|ref|YP_003129958.1| CMP/dCMP deaminase zinc-binding [Halorhabdus utahensis DSM 12940]
 gi|256690888|gb|ACV11225.1| CMP/dCMP deaminase zinc-binding [Halorhabdus utahensis DSM 12940]
          Length = 155

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 46/146 (31%), Gaps = 25/146 (17%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA 63
              M  A+         T    +V  L+VK+G ++  G            H+E++ + EA
Sbjct: 18  EELMRTAISLG------TDPE-AVGALLVKNGDIVASGTGAIFERPDATAHSEIEVIREA 70

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                 E   G   Y T EPC      P C        I  VV  + D D+      +  
Sbjct: 71  CQRLDSERLDGCWLYSTHEPC------PMCTAACCWARIEGVVYALTDEDMPADWGTIFS 124

Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTR 144
                 I D     E +  LH     
Sbjct: 125 AVSAREIRDSC---EHRPELHDGFMH 147


>gi|303276308|ref|XP_003057448.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461800|gb|EEH59093.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 189

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 42/127 (33%), Gaps = 21/127 (16%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
            ++ D R M A               P V C++V D  ++ RG         G  HAE +
Sbjct: 4   FTADDERHMRA-ALAEATAALDRWEVP-VGCVLVLDNEIVARGSNRTNERRNGTRHAEFE 61

Query: 59  ALEE---------AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           A++                    YVT EPC        CA  +   G R VV    +   
Sbjct: 62  AIDALLAAHANDANAARFEDCVLYVTCEPCIM------CAGALSLLGCRAVVYGCGNDKF 115

Query: 110 RVSGRGL 116
             +G  L
Sbjct: 116 GGNGSIL 122


>gi|225028456|ref|ZP_03717648.1| hypothetical protein EUBHAL_02730 [Eubacterium hallii DSM 3353]
 gi|224954206|gb|EEG35415.1| hypothetical protein EUBHAL_02730 [Eubacterium hallii DSM 3353]
          Length = 159

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 54/153 (35%), Gaps = 34/153 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-------------TAYG 50
           S+DA FM  AL  ++        N  V   IV     ++  G                  
Sbjct: 8   SWDAYFMGVALLSAQRSKDN---NTQVGSCIVNPHNKILSMGYNGMPTGCNDDRMPWERK 64

Query: 51  GCP---------HAEVQALEE-AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           G P         HAE+ A+   +G   RGA  Y TL PC+       C + II+ GI  V
Sbjct: 65  GTPLDTKYLYVCHAELNAILNYSGGSLRGARIYTTLFPCNE------CTKAIIQAGITEV 118

Query: 101 VVCVDDP-DVRVSGRGLQWLSQKGIIVDRMMES 132
           +   D   D   +    + L   GI   +  + 
Sbjct: 119 IYYSDKYADTDSTIAAKRMLDMVGITYRQYQKE 151


>gi|94263276|ref|ZP_01287092.1| Guanine deaminase [delta proteobacterium MLMS-1]
 gi|94266409|ref|ZP_01290105.1| Guanine deaminase [delta proteobacterium MLMS-1]
 gi|93452981|gb|EAT03477.1| Guanine deaminase [delta proteobacterium MLMS-1]
 gi|93456359|gb|EAT06483.1| Guanine deaminase [delta proteobacterium MLMS-1]
          Length = 156

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 43/125 (34%), Gaps = 16/125 (12%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
            D  F+   +  +  H+      P  A L+V D  +IG+G            HAE++A+ 
Sbjct: 2   DDQHFIRQTIALAADHIRRRQGGP-FAALVVLDDEIIGQGCNRVTSDNDPTAHAEIEAIR 60

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           +A          G T YV  EPC      P C        ++ +    +  D        
Sbjct: 61  DACRRRGDFRLTGHTLYVNCEPC------PMCLAAAYWADLKEICYAAERRDAAAIDFAD 114

Query: 117 QWLSQ 121
           Q L  
Sbjct: 115 QHLYD 119


>gi|218532085|ref|YP_002422901.1| CMP/dCMP deaminase zinc-binding [Methylobacterium chloromethanicum
           CM4]
 gi|218524388|gb|ACK84973.1| CMP/dCMP deaminase zinc-binding [Methylobacterium chloromethanicum
           CM4]
          Length = 147

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 42/127 (33%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            V   +V+DG V+        T      HAE+ A+  A      E   G   YVTLEPC 
Sbjct: 22  PVGAAVVRDGAVLAVAGNRPRTLCDPTAHAEILAIRAACAALSDERLTGCDLYVTLEPC- 80

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPD---VRVSGRGLQW--LSQKGIIVDRMMESEGK 135
                P CA  I    IRR+     DP    V    R            +     E E  
Sbjct: 81  -----PMCAGAIAFARIRRLYYAASDPKGGGVEHGPRVFNQPTCHHAPEVYSGFREGEAA 135

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 136 GLLRDFF 142


>gi|317028119|ref|XP_001400617.2| deoxycytidylate deaminase [Aspergillus niger CBS 513.88]
          Length = 349

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 47/149 (31%), Gaps = 41/149 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-- 53
           ++D  FM  A   +            V C++V+D  VI  G             GGCP  
Sbjct: 192 NWDQYFMELA-SLAAQRSNCMKR--RVGCVLVRDRRVISTGYNGTPRHIRNCNEGGCPRC 248

Query: 54  ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                           HAE  AL EAG E    GA  Y    PC        C   I + 
Sbjct: 249 NRGEGGGVGLSTCLCLHAEENALLEAGRERIREGAILYCDTCPCL------TCTVKITQV 302

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           GI  VV         +       L+  G+
Sbjct: 303 GITEVVYSQGY---NMDNDSAAILNAAGV 328


>gi|291452772|ref|ZP_06592162.1| deaminase [Streptomyces albus J1074]
 gi|291355721|gb|EFE82623.1| deaminase [Streptomyces albus J1074]
          Length = 142

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 18/122 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG----CPHAEVQALEEAGE 65
           M  AL  ++   G     P V  +++  DG ++               HAE+ AL  A  
Sbjct: 1   MRQALAEAQRA-GRGGDVP-VGAVVLDPDGRLLSAAHNEREADGDPTAHAEILALRRAAA 58

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                     T  VTLEPC        CA   ++  + RVV    D     +G     + 
Sbjct: 59  RSGRWRLTDCTLVVTLEPC------TMCAGAAVQSRVDRVVYGARDEKAGAAGSLWDVVR 112

Query: 121 QK 122
            +
Sbjct: 113 DR 114


>gi|256852104|ref|ZP_05557491.1| tRNA-adenosine deaminase [Lactobacillus jensenii 27-2-CHN]
 gi|260661326|ref|ZP_05862239.1| tRNA-adenosine deaminase [Lactobacillus jensenii 115-3-CHN]
 gi|282934787|ref|ZP_06340025.1| tRNA-specific adenosine deaminase [Lactobacillus jensenii 208-1]
 gi|256615516|gb|EEU20706.1| tRNA-adenosine deaminase [Lactobacillus jensenii 27-2-CHN]
 gi|260547781|gb|EEX23758.1| tRNA-adenosine deaminase [Lactobacillus jensenii 115-3-CHN]
 gi|281301150|gb|EFA93456.1| tRNA-specific adenosine deaminase [Lactobacillus jensenii 208-1]
          Length = 174

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 45/130 (34%), Gaps = 18/130 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHA 55
           M  S     +M  A                +  ++V   G VIGRG            HA
Sbjct: 1   MFSSEEKKHYMELAFA--EAKKAEAQDEVPIGAIVVDPKGQVIGRGYNRRELDNVATHHA 58

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+ EA +          + +VTLEPC+       CA  II   ++ V     D    
Sbjct: 59  EILAINEACKTLNSWRLINCSLFVTLEPCAM------CAGAIINARLKEVFYGAPDHKAG 112

Query: 111 VSGRGLQWLS 120
            SG  +   +
Sbjct: 113 ASGSVVDLFA 122


>gi|134094405|ref|YP_001099480.1| putative guanine deaminase [Herminiimonas arsenicoxydans]
 gi|133738308|emb|CAL61353.1| Guanine deaminase (Guanase) (Guanine aminase) (Guanine
           aminohydrolase) (GAH) (GDEase) [Herminiimonas
           arsenicoxydans]
          Length = 153

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 46/116 (39%), Gaps = 17/116 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
           +SS   + +  A++ ++ +            ++  D  VI  GV     ++    HAE++
Sbjct: 1   MSSHHEKMLHQAVQLAQENRERGGR--PFGAVLAIDNEVIAVGVNNIVHSHDPTTHAEME 58

Query: 59  ALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           A+  A +       +G+  Y +  PC      P C   ++  G+  V    D+ D 
Sbjct: 59  AIRSASQRLGRPNLKGSVIYASGHPC------PMCLAAMVLTGVDAVYYAFDNKDA 108


>gi|169623393|ref|XP_001805104.1| hypothetical protein SNOG_14935 [Phaeosphaeria nodorum SN15]
 gi|111056667|gb|EAT77787.1| hypothetical protein SNOG_14935 [Phaeosphaeria nodorum SN15]
          Length = 370

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 45/127 (35%), Gaps = 38/127 (29%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-- 53
           S+D  FM  A   +     +      V C+IV++  V+  G             GGCP  
Sbjct: 189 SWDQYFMQLADLAAHRSNCMKR---RVGCVIVREKRVVSTGYNGTPRGMTNCNEGGCPRC 245

Query: 54  ----------------HAEVQALEEAGEEARG--ATAYVTLEPCSHYGRSPPCAQFIIEC 95
                           HAE  AL EAG +  G  AT Y    PC        C+  I + 
Sbjct: 246 NNAAKGGTGLNTCLCLHAEENALLEAGRDRIGGSATLYCNTCPCL------TCSVKITQV 299

Query: 96  GIRRVVV 102
           GI  VV 
Sbjct: 300 GISEVVY 306


>gi|332982859|ref|YP_004464300.1| tRNA-adenosine deaminase [Mahella australiensis 50-1 BON]
 gi|332700537|gb|AEE97478.1| tRNA-adenosine deaminase [Mahella australiensis 50-1 BON]
          Length = 156

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 15/102 (14%)

Query: 30  SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            +  ++ K   +IGRG     G      HAE+ A+ +A          G   Y TLEPC+
Sbjct: 29  PIGAVVAKGDEIIGRGHNQVEGLHDATAHAEMLAIRQAMAAINDWRLDGCELYTTLEPCA 88

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                  C   ++ C I +++    D     +G        +
Sbjct: 89  M------CTGAMMLCRIEQLIYGAPDLKWGCAGTLYNLPRDR 124


>gi|226314093|ref|YP_002773989.1| hypothetical protein BBR47_45080 [Brevibacillus brevis NBRC 100599]
 gi|226097043|dbj|BAH45485.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 150

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 16/121 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEAGE 65
           +M  A+  +   +      P     +VK   +I               HAE+ A+ EA +
Sbjct: 3   YMKLAVEKTLEGMNNKLGGP-FGAAVVKGNEIIAVCSNRMMADMDPSQHAEMVAIREACK 61

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                +  G   Y T EPC      P C   II  GI+ V  C    D   +G   + L 
Sbjct: 62  ALGTMDLAGCEIYATCEPC------PMCVGAIIWSGIKVVHYCSTAEDAHENGFSDKHLR 115

Query: 121 Q 121
            
Sbjct: 116 D 116


>gi|229543791|ref|ZP_04432851.1| ComE operon protein 2 [Bacillus coagulans 36D1]
 gi|229328211|gb|EEN93886.1| ComE operon protein 2 [Bacillus coagulans 36D1]
          Length = 200

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 31/122 (25%)

Query: 30  SVACLIVKDGIVIGRGVTA-YGGCP------------------HAEVQALEEA---GEEA 67
           +V   IV+D  +I  G      G                    HAE+ A+ +    G   
Sbjct: 27  AVGATIVRDKRIIAGGYNGSIAGDEHCIDKGCYVIDGHCVRTIHAEMNAILQCAKFGVAT 86

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            GA  YVT  PC H      C + II+ GI+ V    D    RV     +   + G+ V+
Sbjct: 87  NGADLYVTHYPCLH------CTKAIIQAGIQNVYYAQDY---RVHPYAKELFEKAGVHVE 137

Query: 128 RM 129
            +
Sbjct: 138 HV 139


>gi|257870300|ref|ZP_05649953.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
 gi|257804464|gb|EEV33286.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
          Length = 171

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 42/124 (33%), Gaps = 8/124 (6%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVE 293
           KT   A  ++ TE   P        + +     D      D    L+ L      ++ + 
Sbjct: 52  KTYEEAKKMLATEKFYPEKENYVFSRQMQTDLTDAVVVDQDPVAFLSQLKKEK--TVWLV 109

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           GG  + H  + + L+D   +  + +++G G      E G        V     G  V + 
Sbjct: 110 GGGKLLHPLLEADLIDEWYVQIAPVLLGTG--KRLFEPGEYTTRLQFVDMTQMGELVEIH 167

Query: 354 YIGK 357
           Y  K
Sbjct: 168 YQRK 171


>gi|157412461|ref|YP_001483327.1| RibD/RibG domain-containing protein [Prochlorococcus marinus str.
           MIT 9215]
 gi|157387036|gb|ABV49741.1| RibD/ribG C-terminal domain [Prochlorococcus marinus str. MIT 9215]
          Length = 216

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 12/168 (7%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
                IT+ +A S D  I     G   +     +  +    +  DA + G+GT+ A +  
Sbjct: 1   MSIPRITIVVASSLDGRIAFPQGGESHLGSEEDRKMLDQNLSMVDATIFGLGTLKAHEST 60

Query: 207 LTC----RLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
                  R N  +  +  P+ I+     K + + K     +   +I    +   V  L+ 
Sbjct: 61  YLIKNHNRNNEAKISKSQPISIVASNSKKFNSNWKYFTQPIRRWLI----SSSKVDNLSN 116

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
            +    + + D    KK L  L  RG+  L + GGA + +SFI   L+
Sbjct: 117 NEFEKQLFFEDS--WKKTLISLKKRGINDLALLGGAQLINSFIKEDLI 162


>gi|168065799|ref|XP_001784834.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663588|gb|EDQ50344.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 162

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 53/157 (33%), Gaps = 46/157 (29%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI--GRGVTA-------------- 48
           S+D  FM+ A   ++        N  V   IV    VI  G G                 
Sbjct: 13  SWDDYFMAIAFLSAKRSK---DPNRQVGACIVSQDRVILAGIGYNGFPRGCSDDQLPWAK 69

Query: 49  --YGGCP---------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
               G P         HAEV A L +    A G   YVTL PC+       CA+ II+ G
Sbjct: 70  KSQSGDPLQTKYPYVCHAEVNAILNKNHASASGQRLYVTLFPCNE------CAKIIIQAG 123

Query: 97  IRRVVV-----CVDDPDVRVSGRGL----QWLSQKGI 124
           I  VV         + +   +        + LS  GI
Sbjct: 124 IAEVVYYTDKGAHIENNAGGTEPAFVASRRLLSMAGI 160


>gi|18266045|gb|AAL67435.1|AF458409_1 deoxycytidine deaminase [Brassica oleracea]
          Length = 185

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 42/134 (31%), Gaps = 19/134 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
           V   D +F++ A+  +   V      P    +IV    V+               HAEV 
Sbjct: 26  VQDSDHKFLTQAVEEAYKGVDCGDGGP-FGAVIVHKNEVVASCHNMVLKYTDPTAHAEVT 84

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV---R 110
           A+ EA ++           Y + EPC      P C   I    ++R+V            
Sbjct: 85  AIREACKKLNQIELSECEIYASCEPC------PMCFGAIHLSRLKRLVYGAKAEAAIAIG 138

Query: 111 VSGRGLQWLSQKGI 124
                   L   G+
Sbjct: 139 FDDFIADALRGTGV 152


>gi|116193885|ref|XP_001222755.1| hypothetical protein CHGG_06660 [Chaetomium globosum CBS 148.51]
 gi|88182573|gb|EAQ90041.1| hypothetical protein CHGG_06660 [Chaetomium globosum CBS 148.51]
          Length = 551

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 6/60 (10%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
           +  +RFM  AL  +R  +  T+  P V C++V  G VI RG+ A      G  HAE+ A+
Sbjct: 214 AMHSRFMREALDMARLAL-KTNETP-VGCVLVYKGRVIARGMNATNVTRNGTRHAELMAI 271


>gi|322391647|ref|ZP_08065115.1| cytidine and deoxycytidylate deaminase [Streptococcus peroris ATCC
           700780]
 gi|321145458|gb|EFX40851.1| cytidine and deoxycytidylate deaminase [Streptococcus peroris ATCC
           700780]
          Length = 155

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 51/149 (34%), Gaps = 33/149 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           ++D  F + AL  +      T     V  ++VKD  VI  G                   
Sbjct: 7   AWDEYFAAQALLIANRS---TCKRAKVGAVLVKDNKVISTGYNGSVSGTEHCIDHDCLVI 63

Query: 54  --------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                   HAEV A+ +  E    +G TAYVT  PC +      C + +++ G  RVV  
Sbjct: 64  EGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLN------CTKQLLQVGCERVVYI 117

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
                   +        +KG  +  +   
Sbjct: 118 NQYRMDDYAQH---LYHEKGTELTHLPLE 143


>gi|224475513|ref|YP_002633119.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222420120|emb|CAL26934.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 236

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 84/235 (35%), Gaps = 27/235 (11%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV------ 200
             R  I L ++ S +  I              +       +  S+A+++G  T+      
Sbjct: 1   MTRPKIILHMSESINGNITGPYNKVAGSNLGKAYEYADE-KINSNAMILGRKTIEENFTS 59

Query: 201 -----LADDPELTCRLNGLQEHSPM--RII-LDPHFKLSLD---SKIIKTALLAPVIIVT 249
                L +DP+   R      ++ +   +I +DP  K + +    K      +  + +++
Sbjct: 60  KEMPNLPEDPKSYSRNEDFVANTDLDHYVISIDPSGKAAWEQNYIKFRDRPKMHIIEVLS 119

Query: 250 ENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGR-GVTSLLVEGGAAVAHSFINS 305
           EN         R  NI+ ++       DLK +++ L     +  L + GG  V  SF   
Sbjct: 120 ENVSDAYLEHLRNLNISYVFGGPNKNLDLKSVVSKLNQLFNLDKLTLSGGGGVNWSFFEQ 179

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYI 355
            LVD I +  + +V      P+  +    +++     +     +    D+   Y 
Sbjct: 180 GLVDEISVIIAPVVDDHFNRPNLFDNNDKDQSDVIQKYKIHHVEQLDGDIVWLYY 234


>gi|308814577|ref|YP_003934851.1| dCMP deaminase [Shigella phage SP18]
 gi|308206169|gb|ADO19568.1| dCMP deaminase [Shigella phage SP18]
          Length = 193

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 43/159 (27%), Gaps = 68/159 (42%)

Query: 31  VACLIVKDGIVIGRGV-------------------------------------------- 46
           V  +I K+G +I  G                                             
Sbjct: 24  VGAVIEKNGRIISTGYNGSPAGGVNCCEHAEEQGWLLNKPKPVLIPGHKSECVRFSQVDR 83

Query: 47  ------TAYGGCP-------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE+ A+      G    GAT YVTL PC      P CA+
Sbjct: 84  FVLAKAHREAHSAWSKNNEIHAELNAILFAARMGSSIEGATMYVTLSPC------PDCAK 137

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            I + GI+++V C               L   GI V  +
Sbjct: 138 AISQSGIKKLVYCETYDK--NIPGWDDILKNAGIEVFNV 174


>gi|116201857|ref|XP_001226740.1| hypothetical protein CHGG_08813 [Chaetomium globosum CBS 148.51]
 gi|88177331|gb|EAQ84799.1| hypothetical protein CHGG_08813 [Chaetomium globosum CBS 148.51]
          Length = 183

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 55/154 (35%), Gaps = 33/154 (21%)

Query: 8   ARFMSAALRFSRWHVGLTSTNP---SVACLIVKD--GIVIGRGVTAY--------GGCPH 54
             +M  A   ++    L+  +P    V  ++V      +I  G +           G  H
Sbjct: 15  KAYMKYAAEQAQ----LSPPSPSKFCVGAVLVDADRNEIISTGYSEELPRDRPGDPGSTH 70

Query: 55  AEVQALEEAGEE------------ARGATAYVTLEPCSHY-GRSPPCAQFIIECG--IRR 99
           AE     +  +              R    Y T+EPC+     S  C + I+  G  I+ 
Sbjct: 71  AEHCCFIKVADRHGVHDFDIAEVLPRNTVLYTTMEPCNQRLSGSRTCVERILALGNAIKV 130

Query: 100 VVVCVDDPDVRVS-GRGLQWLSQKGIIVDRMMES 132
           V V + +PD  +    G+  L + GI V+ +   
Sbjct: 131 VYVGIREPDTFIQLNEGIVRLEEAGIKVEMLDND 164


>gi|170728088|ref|YP_001762114.1| deaminase-reductase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169813435|gb|ACA88019.1| bifunctional deaminase-reductase domain protein [Shewanella woodyi
           ATCC 51908]
          Length = 178

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 65/204 (31%), Gaps = 43/204 (21%)

Query: 159 SQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214
           S D  I         +        S      L  + D +++G  T               
Sbjct: 10  SLDGYIADKNGSVDWLHELPNPEGSDMGFGELMERVDGLVMGRNTFEM------------ 57

Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274
                   +L        +  +   +       +T+  + V   AF              
Sbjct: 58  --------VLSFGVDWPYNKPVFVLSNR-----LTQLPEGVEDKAFLLNG---------T 95

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
            K++++ +   G  +L ++GG     +F+ + L+D +I+    +++G G   SPL    L
Sbjct: 96  PKEVMSKINALGYNNLYIDGGVT-IQNFLKADLIDEMIITTIPVLLGGG---SPLFGDLL 151

Query: 335 EK-NFMCVRRDYFGSDVCLEYIGK 357
           E   F  V+ +     V   Y  +
Sbjct: 152 EPLKFSYVKSEPLLDCVVKNYYFR 175


>gi|118590701|ref|ZP_01548102.1| cytidine and deoxycytidylate deaminase [Stappia aggregata IAM
           12614]
 gi|118436677|gb|EAV43317.1| cytidine and deoxycytidylate deaminase [Stappia aggregata IAM
           12614]
          Length = 154

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 41/118 (34%), Gaps = 18/118 (15%)

Query: 1   MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
           MP + S    FM  AL  +            V  ++V+ G VI R             HA
Sbjct: 2   MPTAFSNQTSFMDLALEEAVKAA--DRGEVPVGAVLVRGGDVIARDGNRTLELNDPTAHA 59

Query: 56  EVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           EV  +  A      +       YVTLEPC      P CA  I    IRR+     D  
Sbjct: 60  EVLVIRSACALAGSQRLPDCDLYVTLEPC------PMCAGAISFARIRRLYYGAGDEK 111


>gi|52141178|ref|YP_085651.1| ComE operon protein 2 [Bacillus cereus E33L]
 gi|51974647|gb|AAU16197.1| comE operon protein 2 [Bacillus cereus E33L]
          Length = 185

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 55/167 (32%), Gaps = 34/167 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M   S+D  FM+ +   S      T T  +V   IV+D  +I  G      GG       
Sbjct: 1   MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +   A  YVT  PC        C + II+ GI 
Sbjct: 58  CYVIDNHCVRTIHAEMNALLQCAKFGVKTEEAEIYVTHFPCLQ------CCKAIIQSGIT 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQ 145
            V    D  +   +   ++   +  + V  +        L       
Sbjct: 112 AVYYAQDYKNHPYA---VELFKKANVTVKHVPLEYDIAALEDQKRHM 155


>gi|318042353|ref|ZP_07974309.1| putative cytosine deaminase [Synechococcus sp. CB0101]
          Length = 144

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 19/149 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY--GGCP--HAEVQALEE 62
            + M AA + ++           +  ++ + DG ++ RG       G P  H E Q +  
Sbjct: 2   QQLMDAARQEAQQSW--MEGGIPIGAVLAREDGTIVARGHNQRVQNGDPTSHGETQCIRN 59

Query: 63  AGEEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           AG     R  T   TL PC      P CA   +  G RRV++       R      +WL 
Sbjct: 60  AGRRRDWRDLTLVTTLSPC------PMCAGTAVLLGFRRVLIGER----RSFQGAERWLE 109

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           + GI V+ + +   +  +   L ++ E  
Sbjct: 110 EAGIAVECLNDPACEDLMQTMLEQKPELW 138


>gi|153833649|ref|ZP_01986316.1| riboflavin biosynthesis protein RibD C- domain protein [Vibrio
           harveyi HY01]
 gi|148870047|gb|EDL69002.1| riboflavin biosynthesis protein RibD C- domain protein [Vibrio
           harveyi HY01]
          Length = 177

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 71/218 (32%), Gaps = 56/218 (25%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPI----------TGFISKNQVHLLRAQSDAILVGIGTVL 201
             + IA S D  I         +          TGF S      L  + D +++G  T+ 
Sbjct: 3   NIVFIATSLDGYIADKQGKLDWLQSVPNPDNIDTGFFS------LMERIDGLVMGRNTLD 56

Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
                               ++L           +           V  N    +   + 
Sbjct: 57  --------------------VVLSFDCDWPYSKPVF----------VLSNTMTEVPQGYE 86

Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            K    ++    +LK +L  L  +G   L ++GG     +F+   L+D +++ R  I++G
Sbjct: 87  DK----VFLVKGELKDVLADLNAKGFNELYIDGGVT-IQNFLKEDLIDEMVITRFPILLG 141

Query: 322 EGGIPSPLEEGYLEK-NFMCVRRDYFGSD-VCLEYIGK 357
            G   +PL     +  NF   + +      V   YI +
Sbjct: 142 GG---APLFGDLAQPLNFKVTKSEVVLDTLVKTTYIRE 176


>gi|260906121|ref|ZP_05914443.1| cytidine/deoxycytidine deaminase [Brevibacterium linens BL2]
          Length = 148

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 50/136 (36%), Gaps = 21/136 (15%)

Query: 30  SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
            V  +++  +G VIGRG            HAE+ A+  A E         AT  VTLEPC
Sbjct: 18  PVGAVVIDGNGAVIGRGHNRREVDQDPLGHAELMAMRNAAEVTGRWRLDDATLVVTLEPC 77

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-----IIVDRMMESEG 134
           +       CA  ++   I RVV    D     +G     L  +       +   +  S  
Sbjct: 78  AM------CAGAVVGSRIARVVYGAFDEKAGAAGSVWDLLRDRAALHHPEVYSGVAASRC 131

Query: 135 KIFLHAYLTRQVEKRS 150
           +  L  +   + E+  
Sbjct: 132 RELLSEFFAAKRERPP 147


>gi|329117421|ref|ZP_08246138.1| putative ComE operon protein 2 [Streptococcus parauberis NCFD 2020]
 gi|326907826|gb|EGE54740.1| putative ComE operon protein 2 [Streptococcus parauberis NCFD 2020]
          Length = 153

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 52/148 (35%), Gaps = 36/148 (24%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY---------GG-------- 51
            FM+ A   S+     T     V  ++VKD  +I  G              G        
Sbjct: 10  YFMANAELISKRS---TCDRAYVGAVLVKDNRIIATGYNGGVSATDNCDEAGHYMEDGHC 66

Query: 52  --CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV-CVD 105
               HAE+ AL +    G    G   YVT  PC +      C + +++ GI+ +      
Sbjct: 67  IRTVHAEMNALIQCAKEGISTAGTELYVTHFPCIN------CTKALLQAGIKAITYKAHY 120

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESE 133
            P        ++ + +KG++  +    E
Sbjct: 121 RPHPFA----IELMEKKGVVYQQHDVPE 144


>gi|255021639|ref|ZP_05293681.1| tRNA-specific adenosine-34 deaminase [Acidithiobacillus caldus ATCC
           51756]
 gi|254968899|gb|EET26419.1| tRNA-specific adenosine-34 deaminase [Acidithiobacillus caldus ATCC
           51756]
          Length = 178

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 49/125 (39%), Gaps = 18/125 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----CPHAEVQA 59
           + D  +M  AL  +R    L    P V  +++   G ++ R           C HAE+  
Sbjct: 22  TDDRHWMGLALEQARCAS-LVGEVP-VGAVLLSASGALLARAHNRPIAMQDPCAHAEILV 79

Query: 60  LEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           L EA          G T YVTLEPC+       CA  +++  + ++V    DP       
Sbjct: 80  LREAARALGNYRLLGTTLYVTLEPCAM------CAGAMLQARVAQLVFAARDPKGGAVVS 133

Query: 115 GLQWL 119
            L  L
Sbjct: 134 RLGVL 138


>gi|164424748|ref|XP_960920.2| hypothetical protein NCU06673 [Neurospora crassa OR74A]
 gi|157070644|gb|EAA31684.2| hypothetical protein NCU06673 [Neurospora crassa OR74A]
          Length = 404

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 47/149 (31%), Gaps = 41/149 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D+ FM+ A   +            V C++V+D  VI  G                   
Sbjct: 246 SWDSYFMALA-SLAAQRSNCMKR--RVGCVVVRDKRVISTGYNGTPRGLINCGEGGCGRC 302

Query: 47  TAYGGC---------PHAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
               G           HAE  AL EAG E    GA  Y    PC        C+  I + 
Sbjct: 303 NEGQGSGQGLSTCLCMHAEENALLEAGRERVREGAVLYCDTCPCL------TCSIKIAQV 356

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           GI  VV         + G       Q G+
Sbjct: 357 GISEVVYSQGYS---MDGETAAVFRQAGV 382


>gi|297205021|ref|ZP_06922417.1| tRNA-specific adenosine deaminase [Lactobacillus jensenii JV-V16]
 gi|297149599|gb|EFH29896.1| tRNA-specific adenosine deaminase [Lactobacillus jensenii JV-V16]
          Length = 174

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 45/130 (34%), Gaps = 18/130 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHA 55
           M  S     +M  A                +  ++V   G VIGRG            HA
Sbjct: 1   MFSSEEKKHYMELAFA--EAKKAEAQDEVPIGAIVVDPKGQVIGRGYNRRELDNVATHHA 58

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+ EA +          + +VTLEPC+       CA  II   ++ V     D    
Sbjct: 59  EILAINEACKTLNSWRLIDCSLFVTLEPCAM------CAGAIINARLKEVFYGAPDHKAG 112

Query: 111 VSGRGLQWLS 120
            SG  +   +
Sbjct: 113 ASGSVVDLFA 122


>gi|225378211|ref|ZP_03755432.1| hypothetical protein ROSEINA2194_03871 [Roseburia inulinivorans DSM
           16841]
 gi|225209942|gb|EEG92296.1| hypothetical protein ROSEINA2194_03871 [Roseburia inulinivorans DSM
           16841]
          Length = 226

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 3/91 (3%)

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGVTSLLVEGGAAVAHSFI 303
           V+I +  D P  A   ++ N++II+ +   LK  L  L    G   L ++ G  V   F+
Sbjct: 105 VLITSNKDHP--AYNIKENNLHIIFQEKLSLKDALRELKSSYGCNKLTIQSGGTVNGLFL 162

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
             +L D I +  + ++IG     S ++   +
Sbjct: 163 REKLFDYIDVVVAPVLIGGKETSSLIDGSSI 193


>gi|153808000|ref|ZP_01960668.1| hypothetical protein BACCAC_02286 [Bacteroides caccae ATCC 43185]
 gi|149129609|gb|EDM20823.1| hypothetical protein BACCAC_02286 [Bacteroides caccae ATCC 43185]
          Length = 156

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 18/114 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGV----TAYGGCPHAEVQALEE 62
              M  A+  S+ +V           +I  K+G+++  GV    T+     HAEV A+  
Sbjct: 4   EELMRKAIELSKENVENGGG--PFGAVIATKEGVIVATGVNRVTTSCDPTAHAEVSAIRA 61

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           A       +  G   Y + EPC      P C   I    + ++    +  D + 
Sbjct: 62  AAAKLGTFDLSGYEIYTSCEPC------PMCLGAIYWARLDKMYYGNNKTDAKN 109


>gi|33595634|ref|NP_883277.1| hypothetical protein BPP0953 [Bordetella parapertussis 12822]
 gi|33600148|ref|NP_887708.1| hypothetical protein BB1162 [Bordetella bronchiseptica RB50]
 gi|33565712|emb|CAE40360.1| conserved hypothetical protein [Bordetella parapertussis]
 gi|33567746|emb|CAE31660.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 169

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 44/116 (37%), Gaps = 23/116 (19%)

Query: 4   SSFDARFMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
           +  D   +  A+  +R      G          L+ KDG+V+ RGV      +    HAE
Sbjct: 13  TPDDDALLREAIALARANARAGGR-----PFGALVAKDGVVLARGVNRMLADHDPTAHAE 67

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           + AL EAG   R     G   Y + +PC      P C   +   G+ R V    + 
Sbjct: 68  LLALREAGRALRSARLDGCVVYASGQPC------PMCLAAMRMSGVARAVYAYSNE 117


>gi|228929371|ref|ZP_04092394.1| ComE operon protein 2 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228830277|gb|EEM75891.1| ComE operon protein 2 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 188

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 55/167 (32%), Gaps = 34/167 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M   S+D  FM+ +   S      T T  +V   IV+D  +I  G      GG       
Sbjct: 4   MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +   A  YVT  PC        C + II+ GI 
Sbjct: 61  CYVIDNHCVRTIHAEMNALLQCAKFGVKTEEAEIYVTHFPCLQ------CCKAIIQSGIT 114

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQ 145
            V    D  +   +   ++   +  + V  +        L       
Sbjct: 115 AVYYAQDYKNHPYA---VELFEKANVTVKHVPLEYDIAALEDQKRHM 158


>gi|229031977|ref|ZP_04187962.1| ComE operon protein 2 [Bacillus cereus AH1271]
 gi|228729332|gb|EEL80324.1| ComE operon protein 2 [Bacillus cereus AH1271]
          Length = 188

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 55/167 (32%), Gaps = 34/167 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M   S+D  FM+ +   S      T T  +V   IV+D  +I  G      GG       
Sbjct: 4   MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +   A  YVT  PC        C + II+ GI 
Sbjct: 61  CYVIDNHCVRTIHAEMNALLQCAKFGVKTEEAEIYVTHFPCLQ------CCKAIIQSGIT 114

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQ 145
            V    D  +   +   ++   +  + V  +        L       
Sbjct: 115 AVYYAQDYKNHPYA---VELFEKANVKVKHVPLEYDIAALEDQKRHM 158


>gi|257869951|ref|ZP_05649604.1| cytidine/deoxycytidylate deaminase [Enterococcus gallinarum EG2]
 gi|257804115|gb|EEV32937.1| cytidine/deoxycytidylate deaminase [Enterococcus gallinarum EG2]
          Length = 180

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 47/136 (34%), Gaps = 31/136 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            +D  FM+ A+  S            V   +VKD  +I  G                   
Sbjct: 22  PWDQYFMAQAVLLSLRSTCSRLE---VGATLVKDRRIIAGGYNGSVSGDVHCIDEGCYVV 78

Query: 54  --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE+ AL +    G     A  YVT  PC       PC + I++ G++++  
Sbjct: 79  DGHCIRTIHAEMNALLQCAKLGVSTDNAEIYVTHFPCL------PCTKAILQAGVKKIHY 132

Query: 103 CVDDPDVRVSGRGLQW 118
             D  + + +   +Q 
Sbjct: 133 LNDYRNNQYALDLIQQ 148


>gi|254425304|ref|ZP_05039022.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Synechococcus sp. PCC 7335]
 gi|196192793|gb|EDX87757.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Synechococcus sp. PCC 7335]
          Length = 162

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 37/104 (35%), Gaps = 16/104 (15%)

Query: 25  TSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGEEARG-----ATAYV 74
           T+    VA +IV  D  ++               HAEV A+  A +          T YV
Sbjct: 13  TAGEVPVAAIIVGPDNQLVASAANRKERDQDPTAHAEVLAIRAAAKHLGDWHLNQCTLYV 72

Query: 75  TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           TLEPC      P CA  II   +  +V    DP        L  
Sbjct: 73  TLEPC------PMCAGAIIHARLGLLVYGTSDPKTGAIRSVLNL 110


>gi|71001942|ref|XP_755652.1| DRAP deaminase [Aspergillus fumigatus Af293]
 gi|66853290|gb|EAL93614.1| DRAP deaminase, putative [Aspergillus fumigatus Af293]
          Length = 215

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 55/167 (32%), Gaps = 36/167 (21%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV---------KDGIVIGRGVTAY-G 50
           M  S     ++  +L  +        TN  V  ++V         KD  ++  G T    
Sbjct: 1   MTASPH-LDYLRQSLSLAERSPPR-PTNFRVGAILVSRKDGDLEFKDDRILSTGYTMELA 58

Query: 51  GCPHAEVQALEEA----------------GEEARGATAYVTLEPCS-HYGRSPPCAQFII 93
           G  HAE   L                    E  R    YVT+EPC      + PC Q II
Sbjct: 59  GNTHAEQCCLSNYAAVHSVPEDKVAEVLPAEPGRKLVMYVTMEPCGKRLSGNVPCVQRII 118

Query: 94  EC------GIRRVVVCVDDPDVRVSGRG-LQWLSQKGIIVDRMMESE 133
                   GI++V   V +P   V      Q ++  G+    +   E
Sbjct: 119 STRAGGRPGIQKVYFGVKEPGTFVGQSEGCQMMTAAGVQWRVVNGLE 165


>gi|229818708|ref|YP_002880234.1| bifunctional deaminase-reductase domain protein [Beutenbergia
           cavernae DSM 12333]
 gi|229564621|gb|ACQ78472.1| bifunctional deaminase-reductase domain protein [Beutenbergia
           cavernae DSM 12333]
          Length = 297

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 11/141 (7%)

Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL-AFRKKNINIIYC--DCRDLKKLL 279
           ++D   ++    K +       V+++     P+  L   R++ I  +    +  DL   L
Sbjct: 150 VVDGRGRVRWTMKSVGEFD---VLVLASRATPIEYLGYLRREGICYLVAGEERVDLAAAL 206

Query: 280 TILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
             +  R GVT+L+   G  +  + + + LVD + L      IG  G P+  +   L +  
Sbjct: 207 RRMRERLGVTTLVSTAGGGLNGALLRAGLVDELDLVVLPTAIGGAGTPTVFDGPVLPEGA 266

Query: 339 MC----VRRDYFGSDVCLEYI 355
                 +R      D  L   
Sbjct: 267 TPAALRLRSVRVEDDGVLRLR 287


>gi|190689519|gb|ACE86534.1| adenosine deaminase, tRNA-specific 2, TAD2 homolog (S. cerevisiae)
           protein [synthetic construct]
 gi|190690877|gb|ACE87213.1| adenosine deaminase, tRNA-specific 2, TAD2 homolog (S. cerevisiae)
           protein [synthetic construct]
          Length = 160

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 23/116 (19%)

Query: 18  SRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEARGA--- 70
           ++  +  T     V CL+V +  V+G+G            HAE+ A+++  +  R +   
Sbjct: 2   AKEALENTEV--PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKS 59

Query: 71  --------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                     YVT+EPC        CA  +    I  VV    +      G  L  
Sbjct: 60  PSEVFEHTVLYVTVEPCIM------CAAALRLMKIPLVVYGCQNERFGGCGSVLNI 109


>gi|332529894|ref|ZP_08405846.1| cmp/dcmp deaminase zinc-binding protein [Hylemonella gracilis ATCC
           19624]
 gi|332040688|gb|EGI77062.1| cmp/dcmp deaminase zinc-binding protein [Hylemonella gracilis ATCC
           19624]
          Length = 170

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 48/141 (34%), Gaps = 18/141 (12%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV--TAYGG--CPHAE 56
            ++  D+ ++  A+       G    N     +IV + G V+      T+  G    HAE
Sbjct: 12  TLNERDSSYLRQAIT--WSANGRARGNRPFGAVIVSEQGEVLAEAWCNTSETGDCTGHAE 69

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
             A+         +    AT Y + EPC        CA  I    I RVV  +D   +RV
Sbjct: 70  TNAVRLVSPLVDRDTLARATLYSSAEPC------VMCAGAIFWSNIGRVVYGIDAVRLRV 123

Query: 112 SGRGLQWLSQKGIIVDRMMES 132
                       +    +  S
Sbjct: 124 FRGERAEQRDAELSCRDVFAS 144


>gi|238061540|ref|ZP_04606249.1| CMP/dCMP deaminase [Micromonospora sp. ATCC 39149]
 gi|237883351|gb|EEP72179.1| CMP/dCMP deaminase [Micromonospora sp. ATCC 39149]
          Length = 172

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 45/128 (35%), Gaps = 21/128 (16%)

Query: 30  SVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
            V  +I   DG  +  G            HAEV AL  A E          T  VTLEPC
Sbjct: 50  PVGAVIYGPDGTELASGRNERELTGDPTAHAEVLALRRAAERLGRWRLDDCTLVVTLEPC 109

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEG 134
                   CA  I+   I  VV    +P    +G     L  + +     +   ++E+E 
Sbjct: 110 ------TMCAGAIVLARIATVVFGAWEPKTGAAGSLWDVLRDRRLNHRPEVYGGLLEAEN 163

Query: 135 KIFLHAYL 142
              L A+ 
Sbjct: 164 SAVLRAFF 171


>gi|325570545|ref|ZP_08146271.1| competence protein comEB [Enterococcus casseliflavus ATCC 12755]
 gi|325156391|gb|EGC68571.1| competence protein comEB [Enterococcus casseliflavus ATCC 12755]
          Length = 165

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 53/147 (36%), Gaps = 34/147 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            +D  FM+ A+  S            V   +VKD  +I  G                   
Sbjct: 7   PWDQYFMAQAVLLSLRSTCSRLE---VGATLVKDRRIIAGGYNGSVSGDVHCIDDGCYVV 63

Query: 54  --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE+ AL +    G     A  YVT  PC       PC + I++ G++++  
Sbjct: 64  DDHCIRTIHAEMNALLQCAKLGVSTDNAEIYVTHFPCL------PCTKAILQAGVKKIHY 117

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRM 129
             D  + + +   ++ + Q G  V ++
Sbjct: 118 LNDYRNNQYA---MELIQQVGASVHQV 141


>gi|255034861|ref|YP_003085482.1| CMP/dCMP deaminase zinc-binding [Dyadobacter fermentans DSM 18053]
 gi|254947617|gb|ACT92317.1| CMP/dCMP deaminase zinc-binding [Dyadobacter fermentans DSM 18053]
          Length = 164

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 54/158 (34%), Gaps = 38/158 (24%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            FD  +M  A   ++    + +    V  ++ KD  +I  G                   
Sbjct: 11  EFDDIYMDLAKNLAKRSHCIKA---QVGAVLTKDTRIISIGYNGPPAGTHNCDEEFPGVG 67

Query: 54  -------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                        HAE  A+  A   G    G+T +VTL PC        CA+ I    I
Sbjct: 68  CPRDAKGSCSLALHAEQNAILFAVKNGSNIEGSTLFVTLAPCI------ACARVIYTMKI 121

Query: 98  RRVVVCVDD--PDVRVSGRGLQWLSQKGIIVDRMMESE 133
           ++V+               G+++L + G+ V++    E
Sbjct: 122 KKVIFLHSYAAYKGIAVEEGVEFLRRFGVEVEQYRALE 159


>gi|225866307|ref|YP_002751685.1| ComE operon protein 2 [Bacillus cereus 03BB102]
 gi|225787758|gb|ACO27975.1| ComE operon protein 2 [Bacillus cereus 03BB102]
          Length = 185

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 55/167 (32%), Gaps = 34/167 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M   S+D  FM+ +   S      T T  +V   IV+D  +I  G      GG       
Sbjct: 1   MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +   A  YVT  PC        C + II+ GI 
Sbjct: 58  CYVIDNHCVRTIHAEMNALLQCAKFGVKTEEAEIYVTHFPCLQ------CCKAIIQSGIT 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQ 145
            V    D  +   +   ++   +  + V  +        L       
Sbjct: 112 AVYYAQDYKNHPYA---VELFEKANVTVKHVPLEYDIAALEDQKRHM 155


>gi|313157371|gb|EFR56794.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Alistipes sp. HGB5]
          Length = 149

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 56/152 (36%), Gaps = 31/152 (20%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLI-----------VKDGIVIGRGVTAYGGCPHA 55
           D +FM  AL  +R  + L    P     I            +   ++    T      HA
Sbjct: 8   DEKFMRLALNEARKALQL-QEVP-----IGAVVVADGAVVGRGHNLV---ETLSDPTAHA 58

Query: 56  EVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+QAL  A     G+  +G T YVT+EPC     +   AQ      + RVV   DDP   
Sbjct: 59  EMQALTAAASTLGGKYLQGCTLYVTVEPCIMCAGATGWAQ------VGRVVWGADDPKKG 112

Query: 111 VSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
                      K  +V  ++  E +  + ++ 
Sbjct: 113 YRRYSETVFHPKTTVVRGVLGEECEELMTSFF 144


>gi|262282453|ref|ZP_06060221.1| comE operon protein 2 family protein [Streptococcus sp. 2_1_36FAA]
 gi|262261744|gb|EEY80442.1| comE operon protein 2 family protein [Streptococcus sp. 2_1_36FAA]
          Length = 155

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 53/150 (35%), Gaps = 33/150 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           ++D  F + AL  +      T     V  ++VK+  VI  G                   
Sbjct: 7   AWDEYFAAQALLIANRS---TCKRARVGAVLVKENKVISTGYNGSVSGTEHCIDHECLVV 63

Query: 54  --------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                   HAEV A+ +  E    +G TAYVT  PC +      C + +++ G +RVV  
Sbjct: 64  DGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLN------CTKQLLQVGCKRVVYI 117

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
                   +        +K + +  +   E
Sbjct: 118 NQYRIDEYAE---YLYREKEVELVHLPLEE 144


>gi|170037331|ref|XP_001846512.1| deoxycytidylate deaminase [Culex quinquefasciatus]
 gi|167880421|gb|EDS43804.1| deoxycytidylate deaminase [Culex quinquefasciatus]
          Length = 193

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 53/166 (31%), Gaps = 34/166 (20%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTA---YGGCP---------- 53
             FM+ A   ++        N  V   IV D   ++G G        G            
Sbjct: 27  EYFMATAFLAAKRSK---DPNTQVGACIVNDERKIVGVGYNGFPIGCGDDDFPWGKNSND 83

Query: 54  ----------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                     HAE+ A L +   + +  T YV L PC+       CA+ II+  IR V+ 
Sbjct: 84  PLDTKYLYVCHAEMNAILNKNSSDVKNCTMYVALFPCNE------CAKIIIQSRIREVIY 137

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
             D   ++ S    + +     +       +    +  +     + 
Sbjct: 138 MSDKHALKKSTIASKKMFDAAGVKYWQFVPKSSRIVIDFSEIDWDN 183


>gi|300024099|ref|YP_003756710.1| CMP/dCMP deaminase zinc-binding protein [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525920|gb|ADJ24389.1| CMP/dCMP deaminase zinc-binding protein [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 145

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 49/147 (33%), Gaps = 23/147 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK---DGIVIGRGVTAY--GGCPHAEVQALEEA-- 63
           MS AL  +R           V  +IV    D +V+    T        HAE+ A+  A  
Sbjct: 1   MSLALDEARAAAER--GEVPVGAVIVSASGDVLVLAGNRTRELNDPTAHAEILAIRAACS 58

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-- 118
               E       YVTLEPC      P CA  I    IRR+     DP       G +   
Sbjct: 59  VLETERLVDCDLYVTLEPC------PMCAAAISFARIRRLYYGAGDPKSGGVEHGPRIFS 112

Query: 119 ---LSQKGIIVDRMMESEGKIFLHAYL 142
                    +   + E E    L ++ 
Sbjct: 113 QQTCHHAPEVYPGLAEPESAALLKSFF 139


>gi|209885117|ref|YP_002288974.1| CMP/dCMP deaminase, zinc-binding [Oligotropha carboxidovorans OM5]
 gi|209873313|gb|ACI93109.1| CMP/dCMP deaminase, zinc-binding [Oligotropha carboxidovorans OM5]
          Length = 227

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 9/98 (9%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57
            ++  D + M+ A++  R    +  T      ++V+DG V+     +         HAEV
Sbjct: 69  KITEQDRKHMALAIQTMRQAGIVDKTGGPFGAVVVRDGEVLAASGNSVLRDNDPSAHAEV 128

Query: 58  QALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQ 90
            A+  A ++      RGAT + + E C     +   A+
Sbjct: 129 NAIRIACKKIGAPNLRGATLFTSCECCPMCYATAYWAR 166


>gi|209731626|gb|ACI66682.1| Deoxycytidylate deaminase [Salmo salar]
 gi|209735240|gb|ACI68489.1| Deoxycytidylate deaminase [Salmo salar]
 gi|303666664|gb|ADM16237.1| Deoxycytidylate deaminase [Salmo salar]
          Length = 195

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 35/150 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
            +   FM+ A   ++        +  V   IV ++  ++G G                  
Sbjct: 31  EWPEYFMAVAFLSAQRSK---DPSSQVGACIVNQENKIVGIGYNGMPNGCDDDLLPWARS 87

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G + YV L PC+       CA+ II+ GI+ 
Sbjct: 88  ADDRLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNE------CAKLIIQAGIKD 141

Query: 100 VVVCVD-DPDVRVSGRGLQWLSQKGIIVDR 128
           V+   D   D+       + L+  GI   +
Sbjct: 142 VIYLSDKYHDIPEMTASRRLLNLAGIQYKQ 171


>gi|118479492|ref|YP_896643.1| comE operon protein 2 [Bacillus thuringiensis str. Al Hakam]
 gi|228916958|ref|ZP_04080519.1| ComE operon protein 2 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228935647|ref|ZP_04098461.1| ComE operon protein 2 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948040|ref|ZP_04110325.1| ComE operon protein 2 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228987579|ref|ZP_04147696.1| ComE operon protein 2 [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|229093396|ref|ZP_04224501.1| ComE operon protein 2 [Bacillus cereus Rock3-42]
 gi|229141064|ref|ZP_04269606.1| ComE operon protein 2 [Bacillus cereus BDRD-ST26]
 gi|229157941|ref|ZP_04286013.1| ComE operon protein 2 [Bacillus cereus ATCC 4342]
 gi|229186566|ref|ZP_04313727.1| ComE operon protein 2 [Bacillus cereus BGSC 6E1]
 gi|229198454|ref|ZP_04325158.1| ComE operon protein 2 [Bacillus cereus m1293]
 gi|118418717|gb|ABK87136.1| comE operon protein 2 [Bacillus thuringiensis str. Al Hakam]
 gi|228584957|gb|EEK43071.1| ComE operon protein 2 [Bacillus cereus m1293]
 gi|228596825|gb|EEK54484.1| ComE operon protein 2 [Bacillus cereus BGSC 6E1]
 gi|228625501|gb|EEK82256.1| ComE operon protein 2 [Bacillus cereus ATCC 4342]
 gi|228642342|gb|EEK98631.1| ComE operon protein 2 [Bacillus cereus BDRD-ST26]
 gi|228689990|gb|EEL43793.1| ComE operon protein 2 [Bacillus cereus Rock3-42]
 gi|228772153|gb|EEM20602.1| ComE operon protein 2 [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228811626|gb|EEM57962.1| ComE operon protein 2 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228824007|gb|EEM69825.1| ComE operon protein 2 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228842679|gb|EEM87766.1| ComE operon protein 2 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 188

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 55/167 (32%), Gaps = 34/167 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M   S+D  FM+ +   S      T T  +V   IV+D  +I  G      GG       
Sbjct: 4   MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +   A  YVT  PC        C + II+ GI 
Sbjct: 61  CYVIDNHCVRTIHAEMNALLQCAKFGVKTEEAEIYVTHFPCLQ------CCKAIIQSGIT 114

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQ 145
            V    D  +   +   ++   +  + V  +        L       
Sbjct: 115 AVYYAQDYKNHPYA---VELFEKANVTVKHVPLEYDIAALEDQKRHM 158


>gi|238695103|ref|YP_002922297.1| dCMP deaminase [Enterobacteria phage JSE]
 gi|220029239|gb|ACL78174.1| dCMP deaminase [Enterobacteria phage JSE]
          Length = 168

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 51/162 (31%), Gaps = 49/162 (30%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------------- 53
           +M  A   ++    ++     V  LI KDG +I  G                        
Sbjct: 6   YMQIAYLIAKNSKCVSWK---VGALIEKDGRIISTGFNGTPAGQVNCSCHAHKNGWLDDD 62

Query: 54  --------------------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE+ A+     +G    GA+ + T  PC      P CA+
Sbjct: 63  GKMIPEKRPEHSAWSQKNEIHAELNAILFAARSGVSIEGASMWCTASPC------PDCAK 116

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
            I   GI+ +  C D  D          L+   I + R+ ++
Sbjct: 117 AIANSGIKHLYYC-DTYDRNGGRDWADILNNADITITRIPKA 157


>gi|288934196|ref|YP_003438255.1| CMP/dCMP deaminase zinc-binding protein [Klebsiella variicola
           At-22]
 gi|290508399|ref|ZP_06547770.1| cytidine/deoxycytidylate deaminase [Klebsiella sp. 1_1_55]
 gi|288888925|gb|ADC57243.1| CMP/dCMP deaminase zinc-binding protein [Klebsiella variicola
           At-22]
 gi|289777793|gb|EFD85790.1| cytidine/deoxycytidylate deaminase [Klebsiella sp. 1_1_55]
          Length = 152

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 17/113 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG---VTA-YGGCPHAEVQAL 60
           S D R++  AL  ++ ++           ++V+   ++               HAE+ A+
Sbjct: 2   SADDRYLQRALALAKQNIADGGR--PFGAVLVRHDEIVAEAVNTFHLNGDPTAHAELNAV 59

Query: 61  EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            E       E  R    Y + +PC      P C   +   G+R V     + D
Sbjct: 60  RELAARLGSEVLRECVIYASGQPC------PMCLSALYLTGVREVFFANSNQD 106


>gi|251780701|ref|ZP_04823621.1| guanine deaminase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243085016|gb|EES50906.1| guanine deaminase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 157

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 44/156 (28%), Gaps = 20/156 (12%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE- 65
           M   ++  +  +      P     IVKDG +I       +       H E+ A+ +A   
Sbjct: 7   MDLCVKQCKEGMLNLEGGP-FGAAIVKDGKIIALANNTVIKDNDPTAHGEMNAIRQACNK 65

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR----VSGRGLQ 117
               +  G   Y T EPC      P C   II   I +V       D           L+
Sbjct: 66  LSTFDLSGCELYTTSEPC------PMCMSAIIWSNISKVYYGCTVKDAADIGFRDEHILE 119

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHIT 153
           +L         +   +                 + T
Sbjct: 120 FLKGNCTNKKVLDLEQIDKSNCMAAFEMWTNSQNKT 155


>gi|119386848|ref|YP_917903.1| CMP/dCMP deaminase, zinc-binding [Paracoccus denitrificans PD1222]
 gi|119377443|gb|ABL72207.1| CMP/dCMP deaminase, zinc-binding protein [Paracoccus denitrificans
           PD1222]
          Length = 149

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 43/122 (35%), Gaps = 18/122 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA----YGGCPHAEVQALEEA- 63
            M  AL  +R           V  ++V  DG V+ R             HAE+ A+  A 
Sbjct: 6   HMPTALDEARAAARR--GEVPVGAVLVGADGAVLARAGNRTREMRDPTAHAEILAIRAAC 63

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                E   GA  +VTLEPC      P CA  I    I  +    +DP +     G +  
Sbjct: 64  AHLGSERLPGARLWVTLEPC------PMCAAAISAARIEMLYYGAEDPRMGGVRHGARVF 117

Query: 120 SQ 121
             
Sbjct: 118 DH 119


>gi|157104304|ref|XP_001648345.1| deoxycytidylate deaminase [Aedes aegypti]
 gi|108869217|gb|EAT33442.1| deoxycytidylate deaminase [Aedes aegypti]
          Length = 197

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 50/145 (34%), Gaps = 35/145 (24%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYG---------------- 50
             FM+ A   +R        N  V   IV +   ++G G   +                 
Sbjct: 26  EYFMATAFLAARRSK---DPNTQVGACIVNEERKIVGVGYNGFPLGCSDDEFPWGKASLD 82

Query: 51  --GCP-----HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
             G       HAE+ A L +   + +  T YV L PC+       CA+ II+  I+ V+ 
Sbjct: 83  PLGTKYLYVCHAEMNAILNKNSSDVKNCTMYVALFPCNE------CAKIIIQSKIKEVIY 136

Query: 103 CVDDPDVRVSGRGLQWLSQ-KGIIV 126
             D    + +    + +    GI  
Sbjct: 137 MSDKHAHKNTTIAAKKMFDAAGIKY 161


>gi|229123865|ref|ZP_04253058.1| ComE operon protein 2 [Bacillus cereus 95/8201]
 gi|228659579|gb|EEL15226.1| ComE operon protein 2 [Bacillus cereus 95/8201]
          Length = 188

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 55/167 (32%), Gaps = 34/167 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M   S+D  FM+ +   S      T T  +V   IV+D  +I  G      GG       
Sbjct: 4   MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +   A  YVT  PC        C + II+ GI 
Sbjct: 61  CYVIDNHCVRTIHAEMNALLQCAKFGVKTEEAEIYVTHFPCLQ------CCKAIIQSGIT 114

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQ 145
            V    D  +   +   ++   +  + V  +        L       
Sbjct: 115 AVYYAQDYKNHPYA---VELFEKANVTVKHVPLEYDIAALEDQKRHM 158


>gi|221068800|ref|ZP_03544905.1| CMP/dCMP deaminase zinc-binding [Comamonas testosteroni KF-1]
 gi|220713823|gb|EED69191.1| CMP/dCMP deaminase zinc-binding [Comamonas testosteroni KF-1]
          Length = 164

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 23/120 (19%)

Query: 3   VSSFD-ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCP 53
           +S  D  +++  ++R +    +     T        ++V+DG ++ R V           
Sbjct: 1   MSKQDSEKYLLESIRLAMGNVKGRESATWP---FGAVLVRDGKILARAVNQVDDLCDPTA 57

Query: 54  HAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+QAL  A +     +  GA  Y +  PCS       C   ++  G+++V     + D
Sbjct: 58  HAEMQALRIAAKALGSTDLSGAVMYASGYPCSM------CHTAMLLAGVKQVYFAYSNED 111


>gi|330825753|ref|YP_004389056.1| CMP/dCMP deaminase zinc-binding protein [Alicycliphilus
           denitrificans K601]
 gi|329311125|gb|AEB85540.1| CMP/dCMP deaminase zinc-binding protein [Alicycliphilus
           denitrificans K601]
          Length = 163

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 42/115 (36%), Gaps = 17/115 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
           S+ D   +  A+  +  H            +I +DG  +  GV           HAE+QA
Sbjct: 8   STSDIALLRRAVDLA--HANRMQGGRPFGAVIARDGRQLATGVNETHQTCDPSAHAEMQA 65

Query: 60  LEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           L EA    R     G + Y +  PC      P C   ++  G  RV    D+ D 
Sbjct: 66  LREATRARRDASLAGCSVYASGHPC------PMCLAALVMAGAERVFFAFDNRDA 114


>gi|319892646|ref|YP_004149521.1| dCMP deaminase; Late competence protein ComEB [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162342|gb|ADV05885.1| dCMP deaminase; Late competence protein ComEB [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 153

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 51/146 (34%), Gaps = 34/146 (23%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M    +   FM+ +   +      T T  SV   I KD  +I  G               
Sbjct: 1   MKRIQWHEYFMAQSHLLALRS---TCTRLSVGATITKDNRIIAGGYNGSVSGEVHCIDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A+ +    G     AT YVT  PC +      C + II+ GI+
Sbjct: 58  CLMEGGHCIRTIHAEMNAILQCSKQGVSTENATIYVTHFPCLN------CTKSIIQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGI 124
            +    D  +   +   ++ L Q G+
Sbjct: 112 TIYYAEDYHNHDYA---VKLLEQSGV 134


>gi|319762326|ref|YP_004126263.1| cmp/dcmp deaminase zinc-binding protein [Alicycliphilus
           denitrificans BC]
 gi|317116887|gb|ADU99375.1| CMP/dCMP deaminase zinc-binding protein [Alicycliphilus
           denitrificans BC]
          Length = 163

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 42/115 (36%), Gaps = 17/115 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
           S+ D   +  A+  +  H            +I +DG  +  GV           HAE+QA
Sbjct: 8   STSDIALLRRAVDLA--HANRMQGGRPFGAVIARDGRQLATGVNETHQTCDPSAHAEMQA 65

Query: 60  LEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           L EA    R     G + Y +  PC      P C   ++  G  RV    D+ D 
Sbjct: 66  LREATRARRDASLAGCSVYASGHPC------PMCLAALVMAGAERVFFAFDNRDA 114


>gi|153812522|ref|ZP_01965190.1| hypothetical protein RUMOBE_02921 [Ruminococcus obeum ATCC 29174]
 gi|149831447|gb|EDM86535.1| hypothetical protein RUMOBE_02921 [Ruminococcus obeum ATCC 29174]
          Length = 146

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 44/132 (33%), Gaps = 31/132 (23%)

Query: 20  WHVGLTSTNPSVACLIV-KDGIVIGRGV-------------TAYGGCP---------HAE 56
             +     N  V   IV  D  ++  G               A  G P         H+E
Sbjct: 7   SGMRSKDPNSQVGACIVSNDNKILSMGYNGFPKGCSDDEFPWAREGDPLDTKYLYVTHSE 66

Query: 57  VQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD-DPDVRVSGR 114
           + A+    G    GA  YV+L PC+       CA+ II+ GI+ VV   D          
Sbjct: 67  LNAILNYRGGSLEGAKLYVSLFPCNE------CAKAIIQAGIKTVVYDCDKYEHTPSVIA 120

Query: 115 GLQWLSQKGIIV 126
             + L   G+  
Sbjct: 121 SKRMLDAAGVRY 132


>gi|104783631|ref|YP_610129.1| hypothetical protein PSEEN4676 [Pseudomonas entomophila L48]
 gi|95112618|emb|CAK17346.1| conserved hypothetical protein; RibD C-terminal domain [Pseudomonas
           entomophila L48]
          Length = 178

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 58/183 (31%), Gaps = 41/183 (22%)

Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL---RAQSDAILVGIGTVLADDPELTC 209
            + IA S D  I     G   + G       H      A  D +++G GT          
Sbjct: 6   RVFIATSLDGYIAREDGGLDWLMGATQSTDDHGYAGFMAGVDTLVMGRGTFDK------V 59

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
              G   +  +R+++                                  A  + +   + 
Sbjct: 60  MTFGQWPYPDVRVVVVSS----------------------------TLPALPQHSPERVE 91

Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
                +  LL  L   G  SL ++GG  +   F+   LVD + + R  +++G+G    PL
Sbjct: 92  LHPGPIPALLEHLETTGAKSLYLDGG-KLIQGFLREGLVDELTITRIPVLLGQG---IPL 147

Query: 330 EEG 332
             G
Sbjct: 148 FGG 150


>gi|209548083|ref|YP_002280000.1| CMP/dCMP deaminase zinc-binding [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533839|gb|ACI53774.1| CMP/dCMP deaminase zinc-binding [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 145

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 51/146 (34%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA--- 63
           M  AL  +R   G     P +  ++V D I + R             HAE+ A+  A   
Sbjct: 1   MEMALEEAR-AAGERGEVP-IGAVVVIDDIAVSRSGNRTRELNDVTAHAEIAAIRLACEG 58

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW--- 118
              E   GA  YVTLEPC        CA  I    IRR+    +DP       G+++   
Sbjct: 59  LGQERLVGADLYVTLEPC------TMCAAAISFARIRRLYYGAEDPKGGGVDNGVRFYAQ 112

Query: 119 --LSQKGIIVDRMMESEGKIFLHAYL 142
                   +     E +    L  + 
Sbjct: 113 PTCHHAPEVYSGFNEVQSAEILRTFF 138


>gi|309775605|ref|ZP_07670605.1| RibD domain protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916699|gb|EFP62439.1| RibD domain protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 226

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 53/128 (41%), Gaps = 4/128 (3%)

Query: 209 CRLNGLQEHSPMR-IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
                L E +P+  ++LD H                 +++   N  P   +  ++ N++I
Sbjct: 68  VNEKQLPEKTPVSFVLLDNHHLTEHGITYFCARAKQCILVTANNKHPAFQI--QEDNLHI 125

Query: 268 IYCDCRDLKKLLTILV-GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           +Y D   L  +L+ L    G   + ++ G  +   F+  +L+D + L  + ++IG     
Sbjct: 126 LYYDTIKLADVLSQLHTDFGCERITIQTGGTLNSIFLREKLLDYVDLVVAPVLIGGKQTA 185

Query: 327 SPLEEGYL 334
           S ++   +
Sbjct: 186 SVIDGEAI 193


>gi|313672555|ref|YP_004050666.1| cmp/dcmp deaminase zinc-binding protein [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939311|gb|ADR18503.1| CMP/dCMP deaminase zinc-binding protein [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 149

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 35/109 (32%), Gaps = 36/109 (33%)

Query: 31  VACLIVKDGIVIGRGV---------------------------TAYGGCPHAEVQALEEA 63
           V  +IVKD  ++  G                                   HAE  A+ +A
Sbjct: 27  VGAVIVKDNRILATGYNGVPSKISHCSEKGCLRAKLNVPSGQRHELCRGLHAEQNAIIQA 86

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
              G    G+T Y   +PCS       C + II  GI+ +V      D 
Sbjct: 87  SKYGTPIDGSTIYTNAKPCSI------CTKMIINAGIKEIVYMEYYDDP 129


>gi|307708898|ref|ZP_07645358.1| comE operon protein 2 [Streptococcus mitis SK564]
 gi|307620234|gb|EFN99350.1| comE operon protein 2 [Streptococcus mitis SK564]
          Length = 155

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 54/149 (36%), Gaps = 33/149 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
           ++D  F + AL  +      T     V  ++VKD  VI  G      G            
Sbjct: 7   AWDEYFAAQALLIANRS---TCKRAKVGAILVKDNKVISTGYNGSVSGTEHCIDHECLVI 63

Query: 54  --------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                   HAEV A+ +  E    +G TAYVT  PC +      C + +++ G +RVV  
Sbjct: 64  EGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLN------CTKQLLQVGCKRVVYI 117

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
                 R+         +KG  +  +   
Sbjct: 118 NQY---RMDDYAQYLYQEKGTELTHLPLE 143


>gi|297813065|ref|XP_002874416.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
           lyrata subsp. lyrata]
 gi|297320253|gb|EFH50675.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 185

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 42/134 (31%), Gaps = 19/134 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
           V   D +F++ A+  +   V      P    +IV    V+               HAEV 
Sbjct: 26  VHDSDHKFLTQAVEEAYKGVDCGDGGP-FGAVIVHKDEVVASCHNMVLKYTDPTAHAEVT 84

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV---R 110
           A+ EA ++           Y + EPC      P C   I    ++R+V            
Sbjct: 85  AIREACKKLNKIELSECEIYASCEPC------PMCFGAIHLSRLKRLVYGAKAEAAIAIG 138

Query: 111 VSGRGLQWLSQKGI 124
                   L   G+
Sbjct: 139 FDDFIADALRGTGV 152


>gi|15900639|ref|NP_345243.1| cytidine and deoxycytidylate deaminase family protein
           [Streptococcus pneumoniae TIGR4]
 gi|15902698|ref|NP_358248.1| cytidine and deoxycytidylate deaminase family protein
           [Streptococcus pneumoniae R6]
 gi|111657502|ref|ZP_01408246.1| hypothetical protein SpneT_02001292 [Streptococcus pneumoniae
           TIGR4]
 gi|116515918|ref|YP_816142.1| cytidine and deoxycytidylate deaminase family protein
           [Streptococcus pneumoniae D39]
 gi|148985317|ref|ZP_01818540.1| phosphomethylpyrimidine kinase [Streptococcus pneumoniae SP3-BS71]
 gi|148989822|ref|ZP_01821116.1| phosphomethylpyrimidine kinase [Streptococcus pneumoniae SP6-BS73]
 gi|148992405|ref|ZP_01822100.1| phosphomethylpyrimidine kinase [Streptococcus pneumoniae SP9-BS68]
 gi|148997181|ref|ZP_01824835.1| cytidine and deoxycytidylate deaminase family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|149003356|ref|ZP_01828245.1| phosphomethylpyrimidine kinase [Streptococcus pneumoniae SP14-BS69]
 gi|149007622|ref|ZP_01831239.1| cytidine and deoxycytidylate deaminase family protein
           [Streptococcus pneumoniae SP18-BS74]
 gi|149010633|ref|ZP_01832004.1| cytidine and deoxycytidylate deaminase family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|149020384|ref|ZP_01835276.1| phosphomethylpyrimidine kinase [Streptococcus pneumoniae SP23-BS72]
 gi|168484853|ref|ZP_02709798.1| ComE operon protein 2 [Streptococcus pneumoniae CDC1873-00]
 gi|168486764|ref|ZP_02711272.1| ComE operon protein 2 [Streptococcus pneumoniae CDC1087-00]
 gi|168488412|ref|ZP_02712611.1| ComE operon protein 2 [Streptococcus pneumoniae SP195]
 gi|168490831|ref|ZP_02714974.1| ComE operon protein 2 [Streptococcus pneumoniae CDC0288-04]
 gi|168492893|ref|ZP_02717036.1| ComE operon protein 2 [Streptococcus pneumoniae CDC3059-06]
 gi|168575403|ref|ZP_02721339.1| ComE operon protein 2 [Streptococcus pneumoniae MLV-016]
 gi|169834471|ref|YP_001694207.1| ComE operon protein 2 [Streptococcus pneumoniae Hungary19A-6]
 gi|182683664|ref|YP_001835411.1| cytidine and deoxycytidylate deaminase family protein
           [Streptococcus pneumoniae CGSP14]
 gi|194398250|ref|YP_002037390.1| cytidine and deoxycytidylate deaminase family protein
           [Streptococcus pneumoniae G54]
 gi|221231541|ref|YP_002510693.1| cytidine and deoxycytidylate deaminase [Streptococcus pneumoniae
           ATCC 700669]
 gi|225854253|ref|YP_002735765.1| ComE operon protein 2 [Streptococcus pneumoniae JJA]
 gi|225856420|ref|YP_002737931.1| ComE operon protein 2 [Streptococcus pneumoniae P1031]
 gi|225858555|ref|YP_002740065.1| ComE operon protein 2 [Streptococcus pneumoniae 70585]
 gi|225860719|ref|YP_002742228.1| ComE operon protein 2 [Streptococcus pneumoniae Taiwan19F-14]
 gi|237650412|ref|ZP_04524664.1| ComE operon protein 2 [Streptococcus pneumoniae CCRI 1974]
 gi|237822476|ref|ZP_04598321.1| ComE operon protein 2 [Streptococcus pneumoniae CCRI 1974M2]
 gi|298230044|ref|ZP_06963725.1| ComE operon protein 2 [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255825|ref|ZP_06979411.1| ComE operon protein 2 [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502530|ref|YP_003724470.1| competence protein ComEB [Streptococcus pneumoniae TCH8431/19A]
 gi|303255840|ref|ZP_07341881.1| putative cytidine and deoxycytidylate deaminase [Streptococcus
           pneumoniae BS455]
 gi|303260007|ref|ZP_07345981.1| cytidine and deoxycytidylate deaminase family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|303261413|ref|ZP_07347361.1| cytidine and deoxycytidylate deaminase family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|303264080|ref|ZP_07350001.1| cytidine and deoxycytidylate deaminase family protein
           [Streptococcus pneumoniae BS397]
 gi|303267618|ref|ZP_07353458.1| cytidine and deoxycytidylate deaminase family protein
           [Streptococcus pneumoniae BS457]
 gi|303269548|ref|ZP_07355312.1| cytidine and deoxycytidylate deaminase family protein
           [Streptococcus pneumoniae BS458]
 gi|307067348|ref|YP_003876314.1| deoxycytidylate deaminase [Streptococcus pneumoniae AP200]
 gi|307127704|ref|YP_003879735.1| ComE operon protein 2 [Streptococcus pneumoniae 670-6B]
 gi|14972218|gb|AAK74883.1| cytidine and deoxycytidylate deaminase family protein
           [Streptococcus pneumoniae TIGR4]
 gi|15458240|gb|AAK99458.1| dCMP deaminase [Streptococcus pneumoniae R6]
 gi|116076494|gb|ABJ54214.1| cytidine and deoxycytidylate deaminase family protein
           [Streptococcus pneumoniae D39]
 gi|147756881|gb|EDK63921.1| cytidine and deoxycytidylate deaminase family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|147758539|gb|EDK65537.1| phosphomethylpyrimidine kinase [Streptococcus pneumoniae SP14-BS69]
 gi|147760777|gb|EDK67748.1| cytidine and deoxycytidylate deaminase family protein
           [Streptococcus pneumoniae SP18-BS74]
 gi|147765114|gb|EDK72043.1| cytidine and deoxycytidylate deaminase family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|147922515|gb|EDK73634.1| phosphomethylpyrimidine kinase [Streptococcus pneumoniae SP3-BS71]
 gi|147924764|gb|EDK75848.1| phosphomethylpyrimidine kinase [Streptococcus pneumoniae SP6-BS73]
 gi|147928722|gb|EDK79735.1| phosphomethylpyrimidine kinase [Streptococcus pneumoniae SP9-BS68]
 gi|147930686|gb|EDK81668.1| phosphomethylpyrimidine kinase [Streptococcus pneumoniae SP23-BS72]
 gi|168996973|gb|ACA37585.1| ComE operon protein 2 [Streptococcus pneumoniae Hungary19A-6]
 gi|172042006|gb|EDT50052.1| ComE operon protein 2 [Streptococcus pneumoniae CDC1873-00]
 gi|182628998|gb|ACB89946.1| cytidine and deoxycytidylate deaminase family protein
           [Streptococcus pneumoniae CGSP14]
 gi|183570286|gb|EDT90814.1| ComE operon protein 2 [Streptococcus pneumoniae CDC1087-00]
 gi|183573165|gb|EDT93693.1| ComE operon protein 2 [Streptococcus pneumoniae SP195]
 gi|183574679|gb|EDT95207.1| ComE operon protein 2 [Streptococcus pneumoniae CDC0288-04]
 gi|183576942|gb|EDT97470.1| ComE operon protein 2 [Streptococcus pneumoniae CDC3059-06]
 gi|183578400|gb|EDT98928.1| ComE operon protein 2 [Streptococcus pneumoniae MLV-016]
 gi|194357917|gb|ACF56365.1| cytidine and deoxycytidylate deaminase family protein
           [Streptococcus pneumoniae G54]
 gi|220674001|emb|CAR68514.1| putative cytidine and deoxycytidylate deaminase [Streptococcus
           pneumoniae ATCC 700669]
 gi|225720156|gb|ACO16010.1| ComE operon protein 2 [Streptococcus pneumoniae 70585]
 gi|225723766|gb|ACO19619.1| ComE operon protein 2 [Streptococcus pneumoniae JJA]
 gi|225725327|gb|ACO21179.1| ComE operon protein 2 [Streptococcus pneumoniae P1031]
 gi|225727835|gb|ACO23686.1| ComE operon protein 2 [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238125|gb|ADI69256.1| possible competence protein ComEB [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301793904|emb|CBW36300.1| putative cytidine and deoxycytidylate deaminase [Streptococcus
           pneumoniae INV104]
 gi|301799762|emb|CBW32331.1| putative cytidine and deoxycytidylate deaminase [Streptococcus
           pneumoniae OXC141]
 gi|301801592|emb|CBW34290.1| putative cytidine and deoxycytidylate deaminase [Streptococcus
           pneumoniae INV200]
 gi|302597224|gb|EFL64329.1| putative cytidine and deoxycytidylate deaminase [Streptococcus
           pneumoniae BS455]
 gi|302637547|gb|EFL68034.1| cytidine and deoxycytidylate deaminase family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|302638926|gb|EFL69387.1| cytidine and deoxycytidylate deaminase family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|302640933|gb|EFL71316.1| cytidine and deoxycytidylate deaminase family protein
           [Streptococcus pneumoniae BS458]
 gi|302642848|gb|EFL73155.1| cytidine and deoxycytidylate deaminase family protein
           [Streptococcus pneumoniae BS457]
 gi|302646485|gb|EFL76711.1| cytidine and deoxycytidylate deaminase family protein
           [Streptococcus pneumoniae BS397]
 gi|306408885|gb|ADM84312.1| Deoxycytidylate deaminase [Streptococcus pneumoniae AP200]
 gi|306484766|gb|ADM91635.1| ComE operon protein 2 [Streptococcus pneumoniae 670-6B]
 gi|327390102|gb|EGE88445.1| putative deoxycytidylate deaminase [Streptococcus pneumoniae
           GA04375]
 gi|332073130|gb|EGI83609.1| putative deoxycytidylate deaminase [Streptococcus pneumoniae
           GA17570]
 gi|332076024|gb|EGI86490.1| putative deoxycytidylate deaminase [Streptococcus pneumoniae
           GA41301]
 gi|332077161|gb|EGI87623.1| putative deoxycytidylate deaminase [Streptococcus pneumoniae
           GA17545]
 gi|332202609|gb|EGJ16678.1| putative deoxycytidylate deaminase [Streptococcus pneumoniae
           GA41317]
 gi|332203899|gb|EGJ17966.1| putative deoxycytidylate deaminase [Streptococcus pneumoniae
           GA47368]
 gi|332204754|gb|EGJ18819.1| putative deoxycytidylate deaminase [Streptococcus pneumoniae
           GA47901]
          Length = 155

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 54/149 (36%), Gaps = 33/149 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
           ++D  F + AL  +      T     V  ++VKD  VI  G      G            
Sbjct: 7   AWDEYFAAQALLIANRS---TCKRAKVGAILVKDNKVISTGYNGSVSGTEHCIDHECLVI 63

Query: 54  --------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                   HAEV A+ +  E    +G TAYVT  PC +      C + +++ G +RVV  
Sbjct: 64  EGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLN------CTKQLLQVGCKRVVYI 117

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
                 R+         +KG  +  +   
Sbjct: 118 NQY---RMDDYAQYLYQEKGTELTHLPLE 143


>gi|327261885|ref|XP_003215757.1| PREDICTED: tRNA-specific adenosine deaminase 2-like [Anolis
           carolinensis]
          Length = 160

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 48/148 (32%), Gaps = 28/148 (18%)

Query: 30  SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEAR-----------GATAYV 74
            V CL+V +  VIG+G            HAE+ A+++A +                  YV
Sbjct: 13  PVGCLMVYNNEVIGKGKNEVNETKNATRHAEMVAIDQAIDWCHKQKKRMEEVFLHTVLYV 72

Query: 75  TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW----LSQKGIIVDRM- 129
           T+EPC        CA  +    I  VV    +      G  L      L+  G     + 
Sbjct: 73  TVEPCIM------CAAALRMMKIPLVVYGCQNERFGGCGSVLNISSDTLTDTGEPFQCIA 126

Query: 130 --MESEGKIFLHAYLTRQVEKRSHITLK 155
                E    L  +  ++        ++
Sbjct: 127 GYRSEEAVEMLKIFYRQENPNAPKSKVR 154


>gi|94265695|ref|ZP_01289434.1| Guanine deaminase [delta proteobacterium MLMS-1]
 gi|93453781|gb|EAT04153.1| Guanine deaminase [delta proteobacterium MLMS-1]
          Length = 156

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 43/125 (34%), Gaps = 16/125 (12%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
            D  F+   +  +  H+      P  A L+V D  +IG+G            HAE++A+ 
Sbjct: 2   DDQHFIRQTIALAADHIRRHQGGP-FAALVVLDDEIIGQGCNRVTSDNDPTAHAEIEAIR 60

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           +A          G T YV  EPC      P C        ++ +    +  D        
Sbjct: 61  DACRRRGDFRLTGHTLYVNCEPC------PMCLAAAYWADLKEICYAAERRDAAAIDFAD 114

Query: 117 QWLSQ 121
           Q L  
Sbjct: 115 QHLYD 119


>gi|318078667|ref|ZP_07985999.1| putative riboflavin/cytosine deaminase [Streptomyces sp. SA3_actF]
          Length = 110

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 7/77 (9%)

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           R V  +L+EGGA +A +F+ +   D ++ Y + +++G G  P+ L +  +      +R D
Sbjct: 29  RDVRGILLEGGARLAGAFVAAGYTDRVVGYLAPVLLGAG--PAALTDAGIPTLTAALRLD 86

Query: 345 -----YFGSDVCLEYIG 356
                  G D+ +  + 
Sbjct: 87  VRDSTRLGPDLRITAVP 103


>gi|218290658|ref|ZP_03494749.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218239323|gb|EED06521.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 151

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 33/122 (27%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP-------------------HAEVQALEEA---GEEAR 68
           V C+IV+D  +I  G                           HAE  AL +    G  A 
Sbjct: 32  VGCVIVRDKRIIASGYNGSIHGDEHCVDVGCKVVDGHCVRAIHAEQNALLQCARFGIAAE 91

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD-PDVRVSGRGLQWLSQKGIIVD 127
           GA  YVT  PC        C + +I+ GIRRV    +  PD   +    + LS+ G++V+
Sbjct: 92  GADLYVTHTPCL------TCTKSLIQAGIRRVFYEFEYRPDPYAT----ELLSKAGVVVE 141

Query: 128 RM 129
           ++
Sbjct: 142 QV 143


>gi|194212324|ref|XP_001917931.1| PREDICTED: similar to Deoxycytidylate deaminase (dCMP deaminase)
           [Equus caballus]
          Length = 178

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 51/143 (35%), Gaps = 35/143 (24%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-------------------- 46
             FM+ A   ++        N  VA  IV  +  ++G G                     
Sbjct: 17  EYFMAVAFLSAQRSK---DPNSQVAACIVNAENKIVGIGYNGMPNGCSDDLLPWRRTAEN 73

Query: 47  ---TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
              T Y    HAE+ A+  +   + +G T YV L PC+       CA+ II+ GI+ V+ 
Sbjct: 74  KLDTKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNE------CAKLIIQTGIKEVIF 127

Query: 103 CVDDPDVRVSGRGLQWLSQ-KGI 124
             D           + L    G+
Sbjct: 128 MSDKYHDSDEATAARLLFDMAGV 150


>gi|218905463|ref|YP_002453297.1| ComE operon protein 2 [Bacillus cereus AH820]
 gi|218539989|gb|ACK92387.1| ComE operon protein 2 [Bacillus cereus AH820]
          Length = 185

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 55/167 (32%), Gaps = 34/167 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M   S+D  FM+ +   S      T T  +V   IV+D  +I  G      GG       
Sbjct: 1   MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +   A  YVT  PC        C + II+ GI 
Sbjct: 58  CYVIDNHCVRTIHAEMNALLQCAKFGVKTEEAEIYVTHFPCLQ------CCKAIIQSGIT 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQ 145
            V    D  +   +   ++   +  + V  +        L       
Sbjct: 112 AVYYAQDYKNHPYA---VELFEKANVTVKHVPLEYDIAALEDQKRHM 155


>gi|55981511|ref|YP_144808.1| cell cycle protein MesJ [Thermus thermophilus HB8]
 gi|61217197|sp|Q5SI38|TILS_THET8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|55772924|dbj|BAD71365.1| probable cell cycle protein MesJ [Thermus thermophilus HB8]
          Length = 507

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 47/125 (37%), Gaps = 16/125 (12%)

Query: 30  SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRS 85
            V  ++V  G V+ R      G      HAE+  L EAG EARG   YVTLEPC      
Sbjct: 393 PVGAVLVLPGRVL-RAHNRVEGLRDPTAHAEMLLLREAGPEARGGRLYVTLEPCLM---- 447

Query: 86  PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQ 145
             C   + + G+  VV   ++       R       +G     + E E    L  +  R 
Sbjct: 448 --CHHALAQAGV-EVVYGAENLKEGALTRFGLPTRARG----GVRERECAKLLRDFFARL 500

Query: 146 VEKRS 150
            E   
Sbjct: 501 REGCR 505


>gi|326385790|ref|ZP_08207419.1| tRNA-adenosine deaminase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326209769|gb|EGD60557.1| tRNA-adenosine deaminase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 142

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 17/120 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA--- 63
           M  A+  +R    + +    +  ++++ G VI          +    HAE+ A+  A   
Sbjct: 1   MRLAMVEARNAAQVGAV--PIGAVVMRGGEVIATAHNGPRDCHDPTAHAEILAIRAAAKA 58

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
              +       +VTLEPC+       CA  I    I RV     DP       G +   Q
Sbjct: 59  LGADRLDDCDLWVTLEPCAM------CAGAIAHARIARVYYAAPDPKGGAVEHGPRLFEQ 112


>gi|156554302|ref|XP_001602407.1| PREDICTED: similar to deoxycytidylate deaminase [Nasonia
           vitripennis]
          Length = 206

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 56/171 (32%), Gaps = 36/171 (21%)

Query: 5   SFDARFMSAA-LRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-------------TAY 49
            +D  FMS A L   R     T     V   IV  D  ++G G                 
Sbjct: 34  DWDDYFMSVAFLASMRSKDPCTQ----VGACIVNEDKKIVGVGYNGMPIGCNDDDFSWKK 89

Query: 50  GGC----------PHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                         HAE+ A L +  E  +  T YV L PC+       CA+ II+ GI+
Sbjct: 90  AHESELDSKFLYVCHAELNAILNKNSENVKNCTLYVGLFPCNE------CAKVIIQSGIK 143

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           RV    D    +V  +  + +     +     + + +  +  +        
Sbjct: 144 RVYYMSDKHAHKVRTKAAKRMFDAAKVEYCQYKPKHEKIVIDFGEINWNDM 194


>gi|46199478|ref|YP_005145.1| putative cell cycle protein mesJ-like protein [Thermus thermophilus
           HB27]
 gi|61217297|sp|Q72IF6|TILS_THET2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|46197104|gb|AAS81518.1| putative cell cycle protein mesJ-like protein [Thermus thermophilus
           HB27]
          Length = 507

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 47/125 (37%), Gaps = 16/125 (12%)

Query: 30  SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRS 85
            V  ++V  G V+ R      G      HAE+  L EAG EARG   YVTLEPC      
Sbjct: 393 PVGAVLVLPGRVL-RAHNRVEGLRDPTAHAEMLLLREAGPEARGGRLYVTLEPCLM---- 447

Query: 86  PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQ 145
             C   + + G+  VV   ++       R       +G     + E E    L  +  R 
Sbjct: 448 --CHHALAQAGV-EVVYGAENLKEGALTRFGLPTRARG----GVRERECAKLLRDFFARL 500

Query: 146 VEKRS 150
            E   
Sbjct: 501 REGCR 505


>gi|302919326|ref|XP_003052839.1| hypothetical protein NECHADRAFT_67750 [Nectria haematococca mpVI
           77-13-4]
 gi|256733779|gb|EEU47126.1| hypothetical protein NECHADRAFT_67750 [Nectria haematococca mpVI
           77-13-4]
          Length = 482

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 6/60 (10%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
           +   +F+  AL  +R  +  T+  P V C++V DG VI RG+ A      G  HAE+ AL
Sbjct: 173 AMHMKFIEEALDMARLAL-RTNETP-VGCVLVHDGKVIARGMNATNVTRNGTRHAEIMAL 230


>gi|312126379|ref|YP_003991253.1| cmp/dcmp deaminase zinc-binding protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776398|gb|ADQ05884.1| CMP/dCMP deaminase zinc-binding protein [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 171

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 17/124 (13%)

Query: 30  SVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCSHYG 83
            VA  +VK+G +I      +     HAE+ A+ +A      ++ R    +VT EPC    
Sbjct: 49  PVAAAVVKNGKIISIKRNDSKKAIYHAEILAIIDATSKLSTKDLRSCEMFVTKEPC---- 104

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGKIFL 138
             P C   I+   ++R+     D  +  +           L+ K  ++  + E E ++ L
Sbjct: 105 --PMCMSAIVLSKVKRLYFGARDFKMGAAESCFNLSQNPFLNHKVEVIGGICEDECRLLL 162

Query: 139 HAYL 142
             + 
Sbjct: 163 KRFF 166


>gi|291244202|ref|XP_002741990.1| PREDICTED: tRNA-specific adenosine deaminase 2-like [Saccoglossus
           kowalevskii]
          Length = 209

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 43/129 (33%), Gaps = 23/129 (17%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL--- 60
            ++M  +L  +   +   +    V CL+V    VIG+G            HAE+ A+   
Sbjct: 13  RKWMEKSLDMAHDALF--NGEVPVGCLMVYKDEVIGKGRNCVNETRNATRHAEMVAIDEV 70

Query: 61  -------EEAGEEARGAT-AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
                   +  E     T  YVT+EPC        CA  +    +  VV    +      
Sbjct: 71  IGWCEKSNQVKEAVFSKTVLYVTVEPCIM------CAGALRLLHVPLVVYGCSNERFGGC 124

Query: 113 GRGLQWLSQ 121
           G  L     
Sbjct: 125 GSVLNVHKD 133


>gi|257868066|ref|ZP_05647719.1| cytidine/deoxycytidylate deaminase [Enterococcus casseliflavus
           EC30]
 gi|257874396|ref|ZP_05654049.1| cytidine/deoxycytidylate deaminase [Enterococcus casseliflavus
           EC10]
 gi|257876955|ref|ZP_05656608.1| cytidine/deoxycytidylate deaminase [Enterococcus casseliflavus
           EC20]
 gi|257802149|gb|EEV31052.1| cytidine/deoxycytidylate deaminase [Enterococcus casseliflavus
           EC30]
 gi|257808560|gb|EEV37382.1| cytidine/deoxycytidylate deaminase [Enterococcus casseliflavus
           EC10]
 gi|257811121|gb|EEV39941.1| cytidine/deoxycytidylate deaminase [Enterococcus casseliflavus
           EC20]
          Length = 165

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 52/147 (35%), Gaps = 34/147 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            +D  FM+ A+  S            V   +VKD  +I  G                   
Sbjct: 7   PWDQYFMAQAVLLSLRSTCSRLE---VGATLVKDRRIIAGGYNGSVSGDVHCIDDGCYVV 63

Query: 54  --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE+ AL +    G     A  YVT  PC       PC + I++ G++ +  
Sbjct: 64  DDHCIRTIHAEMNALLQCAKLGVSTDNAEIYVTHFPCL------PCTKAILQAGVKTIHY 117

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRM 129
             D  + + +   ++ + Q G  V ++
Sbjct: 118 LNDYRNNQYA---MELIQQVGASVHQV 141


>gi|125718308|ref|YP_001035441.1| dCMP deaminase [Streptococcus sanguinis SK36]
 gi|323351275|ref|ZP_08086931.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
           VMC66]
 gi|125498225|gb|ABN44891.1| DCMP deaminase, putative [Streptococcus sanguinis SK36]
 gi|322122499|gb|EFX94210.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
           VMC66]
 gi|324991558|gb|EGC23491.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
           SK353]
 gi|324993919|gb|EGC25838.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
           SK405]
 gi|324994762|gb|EGC26675.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
           SK678]
 gi|325687201|gb|EGD29223.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
           SK72]
 gi|325694913|gb|EGD36818.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
           SK150]
 gi|325696064|gb|EGD37955.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
           SK160]
 gi|327463181|gb|EGF09502.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
           SK1]
 gi|327474790|gb|EGF20195.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
           SK408]
 gi|328946547|gb|EGG40686.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
           SK1087]
 gi|332359448|gb|EGJ37268.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
           SK355]
 gi|332361943|gb|EGJ39745.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
           SK49]
 gi|332362515|gb|EGJ40315.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
           SK1056]
          Length = 155

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 30/119 (25%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
           ++D  F + AL  +      T     V  ++VKD  VI  G      G            
Sbjct: 7   AWDQYFAAQALLIANRS---TCKRAKVGAVLVKDNKVISTGYNGSVSGTEHCIDHECLVI 63

Query: 54  --------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAEV A+ +  E    +G TAYVT  PC +      C + +++ G +RVV 
Sbjct: 64  DGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLN------CTKQLLQVGCKRVVY 116


>gi|291336300|gb|ADD95862.1| hypothetical protein [uncultured organism MedDCM-OCT-S12-C54]
          Length = 212

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 57/149 (38%), Gaps = 28/149 (18%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV--------KD-GIVIGRGVTAYGGC 52
           P SS D  +M  A   S+           V C IV        KD G VI  GV +    
Sbjct: 30  PASSADENYMDLAFLLSQSSTATG----RVGCAIVSGVRDGAAKDQGSVIVCGVNSGLYS 85

Query: 53  P-----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
           P     HAE  A+ E+   G   RGAT YV+  PC+H      C   +   GI R+V   
Sbjct: 86  PLKADCHAEANAIAESAASGWPLRGATCYVSKPPCNH------CFSLLAVSGIARIVSAG 139

Query: 105 DDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
               V    + L    Q GI    +  ++
Sbjct: 140 PFGAVGSVKQEL-VAQQLGIECSVVRCTD 167


>gi|229019551|ref|ZP_04176367.1| ComE operon protein 2 [Bacillus cereus AH1273]
 gi|229025792|ref|ZP_04182191.1| ComE operon protein 2 [Bacillus cereus AH1272]
 gi|228735500|gb|EEL86096.1| ComE operon protein 2 [Bacillus cereus AH1272]
 gi|228741717|gb|EEL91901.1| ComE operon protein 2 [Bacillus cereus AH1273]
          Length = 185

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 55/166 (33%), Gaps = 34/166 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M   S+D  FM+ +   S      T T  +V   IV+D  +I  G      GG       
Sbjct: 1   MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +   +  YVT  PC        C + II+ GI 
Sbjct: 58  CYVIDNHCVRTIHAEMNALLQCAKFGVKTEESEIYVTHFPCLQ------CCKAIIQSGIT 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            V    D  +   +   ++   Q  + V  +        L      
Sbjct: 112 AVYYAQDYKNHPYA---IELFEQANVTVKHVPLEYDIASLEEQERH 154


>gi|123976438|ref|XP_001330840.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121896949|gb|EAY02085.1| hypothetical protein TVAG_485200 [Trichomonas vaginalis G3]
          Length = 377

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 59/148 (39%), Gaps = 12/148 (8%)

Query: 222 IILDPHFKLSLDSKIIKTALLAP---VIIVTENDDPVLALAFRKKNINIIYC--DCRDLK 276
           + +DP  +L+     ++  +  P   + ++TE   P      R+  I+ +    +  D K
Sbjct: 91  VAVDPSGRLAWKENSLQYDVRPPAHIIEVLTEKATPQYKNYLRRHQISYVIAGKEEMDWK 150

Query: 277 KLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI-----PSPLE 330
            L+  L  +  +  + V+GG  +  SF+N+ +VD + +  + +  G          SP  
Sbjct: 151 LLVQKLKEKFNIKVISVQGGGIINWSFLNAGIVDELSVCLTAVADGSNDAVTLFERSPYF 210

Query: 331 EGYLEKNFMCVRRDYFGS-DVCLEYIGK 357
                  F     D  G+  + + Y  K
Sbjct: 211 PKGTPIEFELKAVDKLGAGGLWIRYTPK 238


>gi|84503628|ref|ZP_01001669.1| probable deaminase [Oceanicola batsensis HTCC2597]
 gi|84387959|gb|EAQ01010.1| probable deaminase [Oceanicola batsensis HTCC2597]
          Length = 155

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 42/116 (36%), Gaps = 27/116 (23%)

Query: 11  MSAALRFSRW-----HVGLTSTNPSVACLIVKDGIVIGRGVT--AYGGCP--HAEVQALE 61
           M  A+  ++          ++       +IVKDG ++   V        P  HAE+ A+ 
Sbjct: 7   MQRAIDLAKENVENGGWPFST-------IIVKDGEILAEAVNSVQKSHDPSDHAEIAAIR 59

Query: 62  EAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A ++       G T YV   PC      P C   +I   +  VV  VD      +
Sbjct: 60  IASKKLASPDLSGCTMYVVGLPC------PMCLTCMIMAKLTDVVYAVDVEKKDAA 109


>gi|220911573|ref|YP_002486882.1| CMP/dCMP deaminase zinc-binding [Arthrobacter chlorophenolicus A6]
 gi|219858451|gb|ACL38793.1| CMP/dCMP deaminase zinc-binding [Arthrobacter chlorophenolicus A6]
          Length = 168

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 51/139 (36%), Gaps = 32/139 (23%)

Query: 30  SVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR---------------- 68
            +  +++  DG V+G G            HAEV A+ +A E+ R                
Sbjct: 29  PIGAVVLGPDGEVLGAGRNRREELGDPTAHAEVVAIRQAAEQLRERARVGRGLDDGWRLS 88

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI---- 124
             T  VTLEPC+       CA  I+   I RVV    D     +G     L ++ +    
Sbjct: 89  DCTLVVTLEPCAM------CAGAIVLARIPRVVFGAWDEKAGAAGSVFDILRERRLNHWV 142

Query: 125 -IVDRMMESEGKIFLHAYL 142
            +   + E E  + L  + 
Sbjct: 143 EVYPGVREEESAVLLRDFF 161


>gi|242058805|ref|XP_002458548.1| hypothetical protein SORBIDRAFT_03g035540 [Sorghum bicolor]
 gi|241930523|gb|EES03668.1| hypothetical protein SORBIDRAFT_03g035540 [Sorghum bicolor]
          Length = 228

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 55/150 (36%), Gaps = 39/150 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA--------------- 48
           S+D  FM+ A   +         N  V   +V ++GI++G G                  
Sbjct: 69  SWDDYFMAIAFLSAERSK---DPNRQVGACLVSQEGIILGIGYNGFPRGCSDDKLPWAKK 125

Query: 49  -YGGCP---------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
              G P         HAEV A+       A G   YVT+ PC+       CA+ II+ G+
Sbjct: 126 SANGNPLETKFPYVVHAEVNAILNTNHASAAGQKLYVTMFPCNE------CAKIIIQSGV 179

Query: 98  RRVVVCVDDPDVRVSG---RGLQWLSQKGI 124
             V+  V+      +       + LS  GI
Sbjct: 180 SEVIYFVEKKIDNSAHVYVASHKLLSMAGI 209


>gi|239816940|ref|YP_002945850.1| CMP/dCMP deaminase zinc-binding [Variovorax paradoxus S110]
 gi|239803517|gb|ACS20584.1| CMP/dCMP deaminase zinc-binding [Variovorax paradoxus S110]
          Length = 176

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 51/144 (35%), Gaps = 23/144 (15%)

Query: 2   PVSSFDARFMSAAL--RFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA----YGGCPH 54
            +   D R++  A+    +    G    N     +IV   G V+     +         H
Sbjct: 17  TLDERDGRYLRKAIVWSHAARRRG----NRPFGSVIVSAAGEVLAEAANSNTESGDCTAH 72

Query: 55  AEVQALEE-AG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           AE+ AL   AG     EE  GAT Y + EPC        CA  I    I RVV  +D   
Sbjct: 73  AEMNALRALAGRGLTREELAGATIYASGEPC------VMCAGAIFWSNIGRVVFGIDAER 126

Query: 109 VRVSGRGLQWLSQKGIIVDRMMES 132
           +RV     Q      +    +  +
Sbjct: 127 LRVFRGERQDQRDAELSCRDVFRA 150


>gi|28950120|emb|CAD70900.1| probable dCMP deaminase [Neurospora crassa]
          Length = 420

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 47/149 (31%), Gaps = 41/149 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D+ FM+ A   +            V C++V+D  VI  G                   
Sbjct: 237 SWDSYFMALA-SLAAQRSNCMKR--RVGCVVVRDKRVISTGYNGTPRGLINCGEGGCGRC 293

Query: 47  TAYGGC---------PHAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
               G           HAE  AL EAG E    GA  Y    PC        C+  I + 
Sbjct: 294 NEGQGSGQGLSTCLCMHAEENALLEAGRERVREGAVLYCDTCPCL------TCSIKIAQV 347

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           GI  VV         + G       Q G+
Sbjct: 348 GISEVVYSQGYS---MDGETAAVFRQAGV 373


>gi|30264397|ref|NP_846774.1| ComE operon protein 2 [Bacillus anthracis str. Ames]
 gi|42783453|ref|NP_980700.1| ComE operon protein 2 [Bacillus cereus ATCC 10987]
 gi|47569322|ref|ZP_00240006.1| comE operon protein 2 [Bacillus cereus G9241]
 gi|47778306|ref|YP_022694.1| ComE operon protein 2 [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187220|ref|YP_030472.1| ComE operon protein 2 [Bacillus anthracis str. Sterne]
 gi|49481368|ref|YP_038380.1| comE operon protein 2 [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|65321698|ref|ZP_00394657.1| COG2131: Deoxycytidylate deaminase [Bacillus anthracis str. A2012]
 gi|165872069|ref|ZP_02216709.1| ComE operon protein 2 [Bacillus anthracis str. A0488]
 gi|167634581|ref|ZP_02392901.1| ComE operon protein 2 [Bacillus anthracis str. A0442]
 gi|167638591|ref|ZP_02396867.1| ComE operon protein 2 [Bacillus anthracis str. A0193]
 gi|170687331|ref|ZP_02878548.1| ComE operon protein 2 [Bacillus anthracis str. A0465]
 gi|170707358|ref|ZP_02897812.1| ComE operon protein 2 [Bacillus anthracis str. A0389]
 gi|177653276|ref|ZP_02935528.1| ComE operon protein 2 [Bacillus anthracis str. A0174]
 gi|190566854|ref|ZP_03019770.1| ComE operon protein 2 [Bacillus anthracis Tsiankovskii-I]
 gi|196034327|ref|ZP_03101736.1| ComE operon protein 2 [Bacillus cereus W]
 gi|196039164|ref|ZP_03106470.1| ComE operon protein 2 [Bacillus cereus NVH0597-99]
 gi|196044885|ref|ZP_03112119.1| ComE operon protein 2 [Bacillus cereus 03BB108]
 gi|206975981|ref|ZP_03236891.1| ComE operon protein 2 [Bacillus cereus H3081.97]
 gi|217961816|ref|YP_002340386.1| ComE operon protein 2 [Bacillus cereus AH187]
 gi|222097771|ref|YP_002531828.1| come operon protein 2 [Bacillus cereus Q1]
 gi|227817103|ref|YP_002817112.1| ComE operon protein 2 [Bacillus anthracis str. CDC 684]
 gi|229603209|ref|YP_002868616.1| ComE operon protein 2 [Bacillus anthracis str. A0248]
 gi|254684083|ref|ZP_05147943.1| comE operon protein 2 [Bacillus anthracis str. CNEVA-9066]
 gi|254721917|ref|ZP_05183706.1| comE operon protein 2 [Bacillus anthracis str. A1055]
 gi|254736431|ref|ZP_05194137.1| comE operon protein 2 [Bacillus anthracis str. Western North
           America USA6153]
 gi|254741468|ref|ZP_05199155.1| comE operon protein 2 [Bacillus anthracis str. Kruger B]
 gi|254750907|ref|ZP_05202946.1| comE operon protein 2 [Bacillus anthracis str. Vollum]
 gi|254757765|ref|ZP_05209792.1| comE operon protein 2 [Bacillus anthracis str. Australia 94]
 gi|300118681|ref|ZP_07056409.1| ComE operon protein 2 [Bacillus cereus SJ1]
 gi|301055818|ref|YP_003794029.1| ComE operon protein 2 [Bacillus anthracis CI]
 gi|30259055|gb|AAP28260.1| ComE operon protein 2 [Bacillus anthracis str. Ames]
 gi|42739382|gb|AAS43308.1| ComE operon protein 2 [Bacillus cereus ATCC 10987]
 gi|47552011|gb|AAT35428.1| ComE operon protein 2 [Bacillus anthracis str. 'Ames Ancestor']
 gi|47553993|gb|EAL12360.1| comE operon protein 2 [Bacillus cereus G9241]
 gi|49181147|gb|AAT56523.1| ComE operon protein 2 [Bacillus anthracis str. Sterne]
 gi|49332924|gb|AAT63570.1| comE operon protein 2 [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|164712200|gb|EDR17737.1| ComE operon protein 2 [Bacillus anthracis str. A0488]
 gi|167513439|gb|EDR88809.1| ComE operon protein 2 [Bacillus anthracis str. A0193]
 gi|167530033|gb|EDR92768.1| ComE operon protein 2 [Bacillus anthracis str. A0442]
 gi|170127602|gb|EDS96475.1| ComE operon protein 2 [Bacillus anthracis str. A0389]
 gi|170668526|gb|EDT19272.1| ComE operon protein 2 [Bacillus anthracis str. A0465]
 gi|172081558|gb|EDT66630.1| ComE operon protein 2 [Bacillus anthracis str. A0174]
 gi|190561845|gb|EDV15814.1| ComE operon protein 2 [Bacillus anthracis Tsiankovskii-I]
 gi|195992869|gb|EDX56828.1| ComE operon protein 2 [Bacillus cereus W]
 gi|196024373|gb|EDX63046.1| ComE operon protein 2 [Bacillus cereus 03BB108]
 gi|196029791|gb|EDX68392.1| ComE operon protein 2 [Bacillus cereus NVH0597-99]
 gi|206745733|gb|EDZ57130.1| ComE operon protein 2 [Bacillus cereus H3081.97]
 gi|217065815|gb|ACJ80065.1| ComE operon protein 2 [Bacillus cereus AH187]
 gi|221241829|gb|ACM14539.1| comE operon protein 2 [Bacillus cereus Q1]
 gi|227007781|gb|ACP17524.1| ComE operon protein 2 [Bacillus anthracis str. CDC 684]
 gi|229267617|gb|ACQ49254.1| ComE operon protein 2 [Bacillus anthracis str. A0248]
 gi|298723930|gb|EFI64644.1| ComE operon protein 2 [Bacillus cereus SJ1]
 gi|300377987|gb|ADK06891.1| comE operon protein 2 [Bacillus cereus biovar anthracis str. CI]
 gi|324328230|gb|ADY23490.1| ComE operon protein 2 [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 185

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 55/167 (32%), Gaps = 34/167 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M   S+D  FM+ +   S      T T  +V   IV+D  +I  G      GG       
Sbjct: 1   MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +   A  YVT  PC        C + II+ GI 
Sbjct: 58  CYVIDNHCVRTIHAEMNALLQCAKFGVKTEEAEIYVTHFPCLQ------CCKAIIQSGIT 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQ 145
            V    D  +   +   ++   +  + V  +        L       
Sbjct: 112 AVYYAQDYKNHPYA---VELFEKANVTVKHVPLEYDIAALEDQKRHM 155


>gi|327489897|gb|EGF21686.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
           SK1058]
          Length = 155

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 30/119 (25%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
           ++D  F + AL  +      T     V  ++VKD  VI  G      G            
Sbjct: 7   AWDQYFAAQALLIANRS---TCKRAKVGAVLVKDNKVISTGYNGSVSGTEHCIDHECLVI 63

Query: 54  --------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAEV A+ +  E    +G TAYVT  PC +      C + +++ G +RVV 
Sbjct: 64  DGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLN------CTKQLLQVGCKRVVY 116


>gi|325690868|gb|EGD32869.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
           SK115]
          Length = 155

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 30/119 (25%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
           ++D  F + AL  +      T     V  ++VKD  VI  G      G            
Sbjct: 7   AWDQYFAAQALLIANRS---TCKRAKVGAVLVKDNKVISTGYNGSVSGTEHCIDHDCLVI 63

Query: 54  --------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAEV A+ +  E    +G TAYVT  PC +      C + +++ G +RVV 
Sbjct: 64  DGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLN------CTKQLLQVGCKRVVY 116


>gi|312080683|ref|XP_003142705.1| dCMP deaminase [Loa loa]
 gi|307762130|gb|EFO21364.1| dCMP deaminase [Loa loa]
          Length = 206

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 51/151 (33%), Gaps = 34/151 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG------------G 51
           S++  FM  A   +            V  +IV +D  ++G G                 G
Sbjct: 45  SWEEYFMGVAHMAALRSK---DPVTQVGAVIVNQDKRIVGSGYNGMPTGCSDDILPWSKG 101

Query: 52  CP-----------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                        HAE+ A L +     +G+T Y  L PC+       CA+ II+ GI  
Sbjct: 102 SENFLENKSAYVCHAEMNAILNKIVGSIKGSTIYTVLFPCNE------CAKLIIQAGISE 155

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           VV   + P    +    +     G+   +  
Sbjct: 156 VVFQREKPKKVNTIASKRMFDMAGVRYRQFC 186


>gi|229175001|ref|ZP_04302520.1| ComE operon protein 2 [Bacillus cereus MM3]
 gi|228608462|gb|EEK65765.1| ComE operon protein 2 [Bacillus cereus MM3]
          Length = 188

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 55/167 (32%), Gaps = 34/167 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M   S+D  FM+ +   S      T T  +V   IV+D  +I  G      GG       
Sbjct: 4   MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +   A  YVT  PC        C + II+ GI 
Sbjct: 61  CYVIDNHCVRTIHAEMNALLQCAKFGVKTEEAEIYVTHFPCLQ------CCKAIIQSGIT 114

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQ 145
            V    D  +   +   ++   +  + V  +        L       
Sbjct: 115 AVYYAQDYKNHPYA---VELFEKADVTVKHVPLEYNIAALEDQKRHM 158


>gi|317051269|ref|YP_004112385.1| CMP/dCMP deaminase zinc-binding protein [Desulfurispirillum indicum
           S5]
 gi|316946353|gb|ADU65829.1| CMP/dCMP deaminase zinc-binding protein [Desulfurispirillum indicum
           S5]
          Length = 154

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 51/158 (32%), Gaps = 44/158 (27%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------- 46
           +D  FM+      R    L      +  +IV++  +I  G                    
Sbjct: 9   WDQYFMNITAEVGRRSSCLRR---QIGAIIVREKRIIATGYNGAPPGVRSSMEIGSCLRD 65

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G    GAT Y T +PCS       CA+ II 
Sbjct: 66  ERNIPSGTQHEICRGLHAEQNAILQAARFGTSVEGATLYCTHQPCSI------CAKIIIG 119

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
            GIR V      PD        Q+  +  I   ++ E 
Sbjct: 120 AGIREVKYVHGYPDEMTR----QYFEEANIDCIQLEEK 153


>gi|207344561|gb|EDZ71669.1| YHR144Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 288

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 48/126 (38%), Gaps = 38/126 (30%)

Query: 5   SFDARFMSAA-LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG---------GCP- 53
           S+D+ FM  A L  SR +         V C+IV++  VI  G              GCP 
Sbjct: 162 SWDSYFMKLATLAASRSNCMKR----RVGCVIVRECRVIATGYNGTPRHLTNCFNGGCPR 217

Query: 54  ---------------HAEVQALEEAGEEARG--ATAYVTLEPCSHYGRSPPCAQFIIECG 96
                          HAE  AL EAG +  G  AT Y    PC        C+  I++ G
Sbjct: 218 CNDGDSRNLHTCLCLHAEENALLEAGRDRVGQNATLYCDTCPCL------TCSVKIVQTG 271

Query: 97  IRRVVV 102
           I  VV 
Sbjct: 272 ISEVVY 277


>gi|255017439|ref|ZP_05289565.1| tRNA-specific adenosine deaminase [Listeria monocytogenes FSL
           F2-515]
          Length = 109

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 16/104 (15%)

Query: 50  GGCPHAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
               HAE+ A+++A +        GA  YVTLEPC      P C+  I+   I +V    
Sbjct: 1   NAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPC------PMCSGAILLSRIEKVYYGA 54

Query: 105 DDPDVRVSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLT 143
            DP    +G  +  L          +   +MESE    L ++  
Sbjct: 55  KDPKAGTAGSLMNLLQDDRFNHTCEVEAGLMESESSEMLKSFFQ 98


>gi|327470713|gb|EGF16169.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
           SK330]
          Length = 155

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 30/119 (25%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
           ++D  F + AL  +      T     V  ++VKD  VI  G      G            
Sbjct: 7   AWDQYFAAQALLIANRS---TCKRAKVGAVLVKDNKVISTGYNGSVSGTEHCIDHECLVI 63

Query: 54  --------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAEV A+ +  E    +G TAYVT  PC +      C + +++ G +RVV 
Sbjct: 64  DGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLN------CTKQLLQVGCKRVVY 116


>gi|322376947|ref|ZP_08051440.1| cytidine and deoxycytidylate deaminase family protein
           [Streptococcus sp. M334]
 gi|321282754|gb|EFX59761.1| cytidine and deoxycytidylate deaminase family protein
           [Streptococcus sp. M334]
          Length = 155

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 54/149 (36%), Gaps = 33/149 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
           ++D  F + AL  +      T     V  ++VKD  VI  G      G            
Sbjct: 7   AWDEYFAAQALLIANRS---TCKRAKVGAILVKDNKVISTGYNGSVSGTEHCIDHECLVI 63

Query: 54  --------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                   HAEV A+ +  E    +G TAYVT  PC +      C + +++ G +RVV  
Sbjct: 64  EGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLN------CTKQLLQVGCKRVVYI 117

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
                 R+         +KG  +  +   
Sbjct: 118 NQY---RMDDYAQYLYQEKGTELTHLPLE 143


>gi|295093723|emb|CBK82814.1| Deoxycytidylate deaminase [Coprococcus sp. ART55/1]
          Length = 159

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 52/147 (35%), Gaps = 34/147 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV-------------TAYG 50
           S+D  FM  A+  +         +  V   IV K+  ++  G                  
Sbjct: 8   SWDQYFMGIAMMSAERSK---DPSTQVGACIVDKNNRILSMGYNGMPAGCDDDTMPWGKS 64

Query: 51  GCP---------HAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           G P         HAE+ ++    G   + A  Y TL PC+       CA+ II+CGI+ V
Sbjct: 65  GAPLDNKYFYVCHAELNSILNYRGGNLKDAIIYSTLFPCNE------CAKAIIQCGIKEV 118

Query: 101 VVCVDDPDVRVSG-RGLQWLSQKGIIV 126
           V   D   +  S     +     G+  
Sbjct: 119 VYMSDKYAMTESTIASKKMFDMAGVAY 145


>gi|264677007|ref|YP_003276913.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
           CNB-2]
 gi|262207519|gb|ACY31617.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
           CNB-2]
          Length = 164

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 23/120 (19%)

Query: 3   VSSFD-ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCP 53
           +S  D  +++  ++R +    +     T        ++V+DG V+ R V           
Sbjct: 1   MSKQDSEKYLLESIRLAMGNVKGRESATWP---FGAVLVRDGKVLARAVNQVDDLCDPTA 57

Query: 54  HAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+QAL  A +     +  GA  Y +  PCS       C   ++  G+++V     + D
Sbjct: 58  HAEMQALRIAAKALGSTDLSGAVMYASGYPCSM------CHTAMLLAGVKQVYFAYSNED 111


>gi|302544137|ref|ZP_07296479.1| cytidine and deoxycytidylate deaminase [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302461755|gb|EFL24848.1| cytidine and deoxycytidylate deaminase [Streptomyces himastatinicus
           ATCC 53653]
          Length = 166

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 55/147 (37%), Gaps = 23/147 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----CPHAEVQALEEA-- 63
           M  AL  +      T   P V  +++  DG V+GRG            HAEV AL  A  
Sbjct: 25  MRLALEEAVRA-PETGDVP-VGAVVLGPDGTVLGRGRNEREAHGDPTAHAEVLALRAAAR 82

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-- 118
              G    G T  VTLEPC+       CA  I+   + RVV    D      G       
Sbjct: 83  RLGGWRLTGCTLVVTLEPCAM------CAGAIVLSRLDRVVYGAIDEKAGAVGSLWDIVR 136

Query: 119 ---LSQKGIIVDRMMESEGKIFLHAYL 142
              L+ +  ++  ++  E    L A+ 
Sbjct: 137 DRRLNHRPEVIHDVLPDECAAPLTAFF 163


>gi|224047988|ref|XP_002195924.1| PREDICTED: adenosine deaminase, tRNA-specific 2, TAD2 homolog (S.
           cerevisiae) [Taeniopygia guttata]
          Length = 172

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 21/102 (20%)

Query: 30  SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEARGA-----------TAYV 74
            V CL+V +G VIGRG            HAE+ A+++  +  +               YV
Sbjct: 25  PVGCLLVYNGEVIGRGRNEVNETKNATGHAEMVAIDQVLDWCKQHKRDYREVFPQLVLYV 84

Query: 75  TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           T+EPC        CA  +    I RVV    +      G  L
Sbjct: 85  TVEPCIM------CAAAVRLMKIPRVVYGCRNERFGGCGSVL 120


>gi|29831349|ref|NP_825983.1| cytidine/deoxycytidine deaminase [Streptomyces avermitilis MA-4680]
 gi|29608464|dbj|BAC72518.1| putative cytidine/deoxycytidine deaminase [Streptomyces avermitilis
           MA-4680]
          Length = 153

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 19/149 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEE 62
             +++ A+  +R   GL      +   +   DG ++GRG            HAE  A   
Sbjct: 11  RAWLATAVEEAR--AGLAEGGIPIGAALYGADGALLGRGHNRRVQDDDPSMHAETAAFRS 68

Query: 63  AGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           AG +   RG T   TL PC +      C+  + + GI RVVV     +      G  WL+
Sbjct: 69  AGRQRTYRGTTMVTTLSPCWY------CSGLVRQFGISRVVVG----EAATFHGGHDWLA 118

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           + G+ +  + + E    L  ++       
Sbjct: 119 EHGVEIVLLDDPECTALLRGFIKNNPALW 147


>gi|70733728|ref|YP_257368.1| guanine deaminase [Pseudomonas fluorescens Pf-5]
 gi|68348027|gb|AAY95633.1| guanine deaminase, putative [Pseudomonas fluorescens Pf-5]
          Length = 153

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 16/110 (14%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
            D  ++  A+  +R +V           L+V++G V+   V           HAE+ A+ 
Sbjct: 3   DDQHYLQQAVALARRNVEQGGR--PFGALLVRNGRVLAEAVNEIHLSQDPTAHAEMLAIR 60

Query: 62  EA----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
            A    G        Y + +PC      P C   +  CG+ R V    + 
Sbjct: 61  AASRQLGPRLDDCVIYASGQPC------PMCLAAMYLCGVSRAVFAASNE 104


>gi|325685004|gb|EGD27143.1| hypothetical protein HMPREF5505_1192 [Lactobacillus delbrueckii
          subsp. lactis DSM 20072]
          Length = 91

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 26/56 (46%)

Query: 5  SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
          + D  +M  AL  +R     T  NP V   +VKDG V+  G   + G  HAE   +
Sbjct: 2  ASDEEYMRLALAAARKAGNATWRNPRVGSCLVKDGKVLATGFHQHYGGFHAERDTI 57


>gi|224136175|ref|XP_002322258.1| predicted protein [Populus trichocarpa]
 gi|222869254|gb|EEF06385.1| predicted protein [Populus trichocarpa]
          Length = 229

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 55/150 (36%), Gaps = 39/150 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA--------------- 48
           S+D  FM+ A   +         N  V   +V ++GI++G G                  
Sbjct: 70  SWDDYFMAIAFLSAERSK---DPNRQVGACLVSQNGIILGIGYNGFPRGCSDDKLPWAKK 126

Query: 49  -YGGCP---------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
              G P         HAEV A+       A G   YVT+ PC+       CA+ II+ G+
Sbjct: 127 SKSGDPLETKYPYVCHAEVNAILNTNHASAAGQKLYVTMFPCNE------CAKIIIQSGV 180

Query: 98  RRVVVCVD---DPDVRVSGRGLQWLSQKGI 124
             V+  V+   +          + LS  GI
Sbjct: 181 SEVIYFVEKNLNNSDIAYIASHKLLSMAGI 210


>gi|118483842|gb|ABK93812.1| unknown [Populus trichocarpa]
          Length = 229

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 55/150 (36%), Gaps = 39/150 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA--------------- 48
           S+D  FM+ A   +         N  V   +V ++GI++G G                  
Sbjct: 70  SWDDYFMAIAFLSAERSK---DPNRQVGACLVSQNGIILGIGYNGFPRGCSDDKLPWAKK 126

Query: 49  -YGGCP---------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
              G P         HAEV A+       A G   YVT+ PC+       CA+ II+ G+
Sbjct: 127 SKSGDPLETKYPYVCHAEVNAILNTNHASAAGQKLYVTMFPCNE------CAKIIIQSGV 180

Query: 98  RRVVVCVD---DPDVRVSGRGLQWLSQKGI 124
             V+  V+   +          + LS  GI
Sbjct: 181 SEVIYFVEKNLNNSDIAYIASHKLLSMAGI 210


>gi|325845138|ref|ZP_08168447.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Turicibacter sp. HGF1]
 gi|325488803|gb|EGC91203.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Turicibacter sp. HGF1]
          Length = 157

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 50/151 (33%), Gaps = 33/151 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGC----------- 52
           S+D  FM  AL  S            V   IV +   ++G G   +              
Sbjct: 7   SWDEYFMGIALLSSMRSK---DPQTQVGACIVNEEHRIVGIGYNGFPHGCKDEEFPWERE 63

Query: 53  -----------PHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                       HAE  A+  +    +    YV+L PC        CA++II+ GI  +V
Sbjct: 64  GEFINTKYPYVVHAEQNAILNSTTSLKHCRLYVSLFPCHE------CAKYIIQSGINEIV 117

Query: 102 VCVDDP-DVRVSGRGLQWLSQKGIIVDRMME 131
              D       +    + L   G+   +M E
Sbjct: 118 YMSDKYAHTDSTLASKRMLDAAGVKYRQMAE 148


>gi|225013101|ref|ZP_03703515.1| CMP/dCMP deaminase zinc-binding [Flavobacteria bacterium MS024-2A]
 gi|225002759|gb|EEG40741.1| CMP/dCMP deaminase zinc-binding [Flavobacteria bacterium MS024-2A]
          Length = 154

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 52/162 (32%), Gaps = 40/162 (24%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-----------IVIGRGV--T 47
           + +   D  FM  AL  +                   D             +I R    T
Sbjct: 8   LNMELDDQYFMKQALAEAEKAAF-------------ADEVPVGAVVVVEQRIIARAHNLT 54

Query: 48  AYGG--CPHAEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                   HAE+QA+  A     G+   G T YVTLEPC        CA  ++     RV
Sbjct: 55  ERLHDVTAHAEMQAITAAANYLNGKYLVGCTLYVTLEPC------VMCAGALVWSQFDRV 108

Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
           V    D         L  L  K I+   ++  E K  L A+ 
Sbjct: 109 VFGASDSKRGFQQANLD-LHPKTILSGGVLAEEAKALLDAFF 149


>gi|160938326|ref|ZP_02085681.1| hypothetical protein CLOBOL_03223 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438699|gb|EDP16456.1| hypothetical protein CLOBOL_03223 [Clostridium bolteae ATCC
           BAA-613]
          Length = 155

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 17/111 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI----GRGVTAYGGCPHAEVQALEE 62
           D  FM  A+R S+  V  +  N     ++VKDG +I     +  T      HAE   L  
Sbjct: 4   DEIFMKEAIRLSQLAV--SHGNEPFGAVLVKDGEIIFSNENQIYTGSDPTFHAEAGLLRR 61

Query: 63  -----AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                   + R  T Y + EPC        C   ++   + R+V    D D
Sbjct: 62  FCAETHITDLREYTLYSSCEPCFM------CCGAMVWTKLGRLVYGASDID 106


>gi|56551192|ref|YP_162031.1| CMP/dCMP deaminase zinc-binding protein [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|260753167|ref|YP_003226060.1| CMP/dCMP deaminase zinc-binding [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|9931341|gb|AAG02151.1|AF212041_7 nitrogen fixation protein [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56542766|gb|AAV88920.1| CMP/dCMP deaminase zinc-binding protein [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|258552530|gb|ACV75476.1| CMP/dCMP deaminase zinc-binding protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 160

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 40/110 (36%), Gaps = 22/110 (20%)

Query: 11  MSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGVTA-----YGGCPHAEVQALEEA 63
           M  AL  +    H G       V  ++   G +I     A          HAEV+AL +A
Sbjct: 17  MRQALLQAESAAHQGEV----PVGAVVTFKGKIIAVAGNAMQPPFIDPTGHAEVRALRQA 72

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                         +VTLEPC+       CA  I    IRR+    DDP 
Sbjct: 73  ASVLGSSRLDQCDLWVTLEPCAM------CAGAIATARIRRLYYGADDPK 116


>gi|327461076|gb|EGF07409.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
           SK1057]
          Length = 155

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 30/119 (25%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
           ++D  F + AL  +      T     V  ++VKD  VI  G      G            
Sbjct: 7   AWDQYFAAQALLIANRS---TCKRAKVGAVLVKDNKVISTGYNGSVSGTEHCIDHECLVI 63

Query: 54  --------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAEV A+ +  E    +G TAYVT  PC +      C + +++ G +RVV 
Sbjct: 64  DGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLN------CTKQLLQVGCKRVVY 116


>gi|289168253|ref|YP_003446522.1| dCMP deaminase [Streptococcus mitis B6]
 gi|307705252|ref|ZP_07642119.1| comE operon protein 2 [Streptococcus mitis SK597]
 gi|307706964|ref|ZP_07643763.1| comE operon protein 2 [Streptococcus mitis SK321]
 gi|288907820|emb|CBJ22660.1| dCMP deaminase [Streptococcus mitis B6]
 gi|307617678|gb|EFN96846.1| comE operon protein 2 [Streptococcus mitis SK321]
 gi|307621201|gb|EFO00271.1| comE operon protein 2 [Streptococcus mitis SK597]
          Length = 155

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 54/149 (36%), Gaps = 33/149 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
           ++D  F + AL  +      T     V  ++VKD  VI  G      G            
Sbjct: 7   AWDEYFAAQALLIANRS---TCKRAKVGAILVKDNKVISTGYNGSVSGTEHCIDHECLVI 63

Query: 54  --------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                   HAEV A+ +  E    +G TAYVT  PC +      C + +++ G +RVV  
Sbjct: 64  EGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLN------CTKQLLQVGCKRVVYI 117

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
                 R+         +KG  +  +   
Sbjct: 118 NQY---RMDDYAQYLYQEKGTELTHLPLE 143


>gi|330999408|ref|ZP_08323122.1| ComE operon protein 2 family protein [Parasutterella
           excrementihominis YIT 11859]
 gi|329574834|gb|EGG56393.1| ComE operon protein 2 family protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 138

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 35/151 (23%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA------------ 48
           M +   +  +M+ A   ++           V C+IVK+  +I  G               
Sbjct: 1   MDIKKDNEMYMTIAQIAAQRSYAKRLK---VGCIIVKNHSIISFGWNGMPTGYDNCCEYE 57

Query: 49  -------YGGCPHAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A   L + G  + GA  ++T  PC H      C+  I +CGI 
Sbjct: 58  VDGKLVTRPEVQHAELNAIAKLAQNGYSSNGAKIFITHSPCIH------CSLLIQKCGIN 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            V    +  D      G+Q+L + GI V+++
Sbjct: 112 EVYYHENYRD----DAGIQFLKKAGIKVEQL 138


>gi|308048147|ref|YP_003911713.1| bifunctional deaminase-reductase domain protein [Ferrimonas
           balearica DSM 9799]
 gi|307630337|gb|ADN74639.1| bifunctional deaminase-reductase domain protein [Ferrimonas
           balearica DSM 9799]
          Length = 182

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 65/205 (31%), Gaps = 35/205 (17%)

Query: 156 IAVSQDNMIGMAGCGSVPI-TGFISKNQ---VHLLRAQSDAILVGIGTVLADDPELTCRL 211
           IA S D  I     G   + +    +          A  DA+L+G  T  +         
Sbjct: 7   IATSLDGFIADRDGGLDWLHSVPNPQGDDLGFAAFLAGIDALLMGRNTYQS--------- 57

Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD 271
                      ILD +  L       K     PV +V  +               +    
Sbjct: 58  -----------ILDFNLDLPSQWPYPK-----PVYVVGSSP----ITIPDALEGKVFALA 97

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             +  +++  L   G   L ++GG      F+   LVD +I+ +  +V+G GG+P     
Sbjct: 98  PAEPAEMMATLAQMGHRHLYLDGG-NTIQRFMAQGLVDELIISQIPVVLG-GGVPLFGAL 155

Query: 332 GYLEKNFMCVRRDYFGSDVCLEYIG 356
             ++   +       G+ V   Y  
Sbjct: 156 PTMQSYELVSSEVMLGAMVKSHYRR 180


>gi|212703995|ref|ZP_03312123.1| hypothetical protein DESPIG_02048 [Desulfovibrio piger ATCC 29098]
 gi|212672588|gb|EEB33071.1| hypothetical protein DESPIG_02048 [Desulfovibrio piger ATCC 29098]
          Length = 188

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 45/131 (34%), Gaps = 14/131 (10%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG----CPHAEVQA 59
               R M AA+  +R  +      P    LI    G V+               HAEV A
Sbjct: 26  ELHRRHMLAAIEAAREGMLSGKGGP-FGALITDPAGRVVSVACNEVLASRDCTMHAEVAA 84

Query: 60  LEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG-RGLQ 117
           L + G  + RG T Y T  PC        C   I+   +  +  C D    R +G     
Sbjct: 85  LRKVGHLDLRGHTLYATGFPC------VMCLGAILWSRVSTLYYCNDYAMTRAAGFDDED 138

Query: 118 WLSQKGIIVDR 128
           ++ + G +   
Sbjct: 139 FMREVGTVFGC 149


>gi|156846411|ref|XP_001646093.1| hypothetical protein Kpol_543p65 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116765|gb|EDO18235.1| hypothetical protein Kpol_543p65 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 268

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 67/206 (32%), Gaps = 42/206 (20%)

Query: 9   RFMSAALRFSRWHV--GLTSTNPSVACLIV--KDGIVIGRGVTAY----GGCPHAEVQAL 60
            +M  AL+ +R  +  G T     VAC+ V  K G ++  G+        G  HAE  A+
Sbjct: 10  EYMEYALKLARHALDHGET----PVACIFVDKKTGGIVSYGMNDTNNSLAGTSHAEFVAI 65

Query: 61  EEAG-------EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           +          ++      YVT+EPC        CA  + + GI  +V    +     +G
Sbjct: 66  DRIKNQFSSTFDKFEDIIVYVTVEPCIM------CASALKQLGILNIVFGCGNERFGGNG 119

Query: 114 RGLQWLSQKGI----------------IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
             L   +                    I+  ++  E  + L  +  R+         K  
Sbjct: 120 TVLSINNDTCTKLPANTVNSDSNRQDLILPGILRKEAIMLLRFFYVRENTTAPKPRTKTE 179

Query: 158 VSQDNMIGMAGCGSVPITGFISKNQV 183
              D                I+ N+V
Sbjct: 180 RKLDRDT-FPDIEWSKYIDEITFNKV 204


>gi|50549399|ref|XP_502170.1| YALI0C23210p [Yarrowia lipolytica]
 gi|49648037|emb|CAG82490.1| YALI0C23210p [Yarrowia lipolytica]
          Length = 310

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 49/151 (32%), Gaps = 46/151 (30%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPS---VACLIVKDGIVIGRGVTA------------- 48
           S+DA FM  A   +         N     V C+IV+D  VI  G                
Sbjct: 161 SWDAYFMRLA-DLAAERS-----NCMKRQVGCVIVRDSRVICTGYNGTPRGAVNCNEGGC 214

Query: 49  ------YGGCP-------HAEVQALEEAG-EEARGAT-AYVTLEPCSHYGRSPPCAQFII 93
                   G         HAE  AL EAG E  R  +  Y    PC        C+  I+
Sbjct: 215 ARCNSGEAGAALSTCLCLHAEENALLEAGRERIRDTSKLYCNTCPCL------TCSIKIV 268

Query: 94  ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           + GI+ V+          S +    L   G+
Sbjct: 269 QAGIKEVIYSKSYNMDAQSSKV---LHDAGV 296


>gi|329903280|ref|ZP_08273412.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327548444|gb|EGF33120.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 228

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 274 DLKKLLTILV-GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           DL K++ +L    G   L+VEGG  V+ SF+N+ LVD + +    ++ G G  P+  E
Sbjct: 139 DLAKVVALLADELGTKRLIVEGGPHVSGSFVNAGLVDEVSVLVLPLIDGRGDHPASFE 196


>gi|256825377|ref|YP_003149337.1| pyrimidine reductase, riboflavin biosynthesis [Kytococcus
           sedentarius DSM 20547]
 gi|256688770|gb|ACV06572.1| pyrimidine reductase, riboflavin biosynthesis [Kytococcus
           sedentarius DSM 20547]
          Length = 229

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 57/174 (32%), Gaps = 19/174 (10%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
            +   +  S D  +      S  +          LLRA  D +LVG  T           
Sbjct: 38  WVRTNLVTSLDGAVTGPDGVSGSLGTEPDARVFGLLRALCDVVLVGGSTAR--------- 88

Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270
               + + P  + +DP +     +  +      P++ V      + A         ++  
Sbjct: 89  ---REAYRP--VTVDPRWAPFRTAAGL--GEEPPLLAVVSRSGELGAELTGAD--RVLTV 139

Query: 271 DCRD-LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           D RD    +L  +   G   +L EGG ++    +   LVD      +   IG G
Sbjct: 140 DARDGFAGVLQDVRDAGHRVVLCEGGPSIWQQLLTEELVDEWCQTLAPTHIGGG 193


>gi|268574528|ref|XP_002642242.1| Hypothetical protein CBG18226 [Caenorhabditis briggsae]
 gi|187025244|emb|CAP35711.1| hypothetical protein CBG_18226 [Caenorhabditis briggsae AF16]
          Length = 168

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 38/121 (31%), Gaps = 24/121 (19%)

Query: 1   MPVSSFDA-------RFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTA---- 48
           M  S  D          M+ A+  +   V      P    +IV + G V+ +G       
Sbjct: 1   MTPSVDDESLPPNHKELMAEAVAEACRGVECGDGGP-FGAVIVDNKGNVVAKGHNMVLVT 59

Query: 49  YGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                HAE+ A+  A +     +  G T Y +  PC      P C    +      +   
Sbjct: 60  KDPTMHAEMTAIRNACKTLGTFDLSGHTLYTSCYPC------PMCMGASLWARFDAIYYG 113

Query: 104 V 104
            
Sbjct: 114 A 114


>gi|116831274|gb|ABK28591.1| unknown [Arabidopsis thaliana]
          Length = 233

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 59/169 (34%), Gaps = 38/169 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA--------------- 48
           S+D  FM+ A   +         N  V   +V ++G+++G G                  
Sbjct: 67  SWDDYFMAIAFLSAERSK---DPNRQVGACLVSQNGVILGIGYNGFPRGCSDDKLPWAKK 123

Query: 49  -YGGCP---------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
              G P         HAEV A+       A G   YVT+ PC+       CA+ I++ G+
Sbjct: 124 SRTGDPLETKYPYVCHAEVNAILNTNHASAAGQKLYVTMFPCNE------CAKIILQSGV 177

Query: 98  RRVVVCVDD--PDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
             V+  V+    D  V+      L     +  R  + E    L  +   
Sbjct: 178 AEVIYFVEKRPNDSDVAYVASHKLLSMANVKVRKHQPEMDEILIKFEEH 226


>gi|42565719|ref|NP_190423.2| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
           thaliana]
 gi|91806546|gb|ABE66000.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
           thaliana]
 gi|332644907|gb|AEE78428.1| dCMP deaminase [Arabidopsis thaliana]
          Length = 232

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 59/169 (34%), Gaps = 38/169 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA--------------- 48
           S+D  FM+ A   +         N  V   +V ++G+++G G                  
Sbjct: 67  SWDDYFMAIAFLSAERSK---DPNRQVGACLVSQNGVILGIGYNGFPRGCSDDKLPWAKK 123

Query: 49  -YGGCP---------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
              G P         HAEV A+       A G   YVT+ PC+       CA+ I++ G+
Sbjct: 124 SRTGDPLETKYPYVCHAEVNAILNTNHASAAGQKLYVTMFPCNE------CAKIILQSGV 177

Query: 98  RRVVVCVDD--PDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
             V+  V+    D  V+      L     +  R  + E    L  +   
Sbjct: 178 AEVIYFVEKRPNDSDVAYVASHKLLSMANVKVRKHQPEMDEILIKFEEH 226


>gi|21673576|ref|NP_661641.1| deoxycytidylate deaminase, putative [Chlorobium tepidum TLS]
 gi|21646688|gb|AAM71983.1| deoxycytidylate deaminase, putative [Chlorobium tepidum TLS]
          Length = 175

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 50/154 (32%), Gaps = 44/154 (28%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP------------- 53
             FM  A   SR     T  +  V  +IV+D  ++  G      G P             
Sbjct: 31  EYFMCVAHLISRRA-TCTRGH--VGAVIVRDNNILSTGYNGAPSGLPHCNETNCKIYRSI 87

Query: 54  --------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                         HAE+ A+ +A   G   + A  Y+T  PC H      C + +I  G
Sbjct: 88  HPDGTVEENCVNTIHAEINAIAQAAKHGVSIKDADIYITASPCIH------CLKVLINVG 141

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           I+ +                + L   GI + ++ 
Sbjct: 142 IKTIYY----DKPYKIEHIAELLRLSGIRLVQVN 171


>gi|148545117|ref|YP_001272487.1| deaminase-reductase domain-containing protein [Lactobacillus
           reuteri DSM 20016]
 gi|184154450|ref|YP_001842791.1| hypothetical protein LAR_1795 [Lactobacillus reuteri JCM 1112]
 gi|227364274|ref|ZP_03848368.1| deaminase-reductase domain protein [Lactobacillus reuteri MM2-3]
 gi|325683475|ref|ZP_08162991.1| deaminase-reductase domain protein [Lactobacillus reuteri MM4-1A]
 gi|148532151|gb|ABQ84150.1| bifunctional deaminase-reductase domain protein [Lactobacillus
           reuteri DSM 20016]
 gi|183225794|dbj|BAG26311.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
 gi|227070708|gb|EEI09037.1| deaminase-reductase domain protein [Lactobacillus reuteri MM2-3]
 gi|324977825|gb|EGC14776.1| deaminase-reductase domain protein [Lactobacillus reuteri MM4-1A]
          Length = 225

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 50/143 (34%), Gaps = 9/143 (6%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLL 279
           II+D    L    +       + +II +E           ++NI+ I    D  DL K +
Sbjct: 85  IIVDTKGTLQWGKE--NGNNFSHLIITSEQVTKDYLDYLNRQNISWIATGKDQIDLAKAM 142

Query: 280 TILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN- 337
            IL     +  L + GG  +   F+ + LVD I +       G  G PS  +        
Sbjct: 143 EILADEFNIDRLAIVGGGKINGGFLEAGLVDEISILIGAGADGRTGQPSLFDGRPESSRP 202

Query: 338 --FMCVRRDYFGSD-VCLEYIGK 357
                     F    V L Y+ K
Sbjct: 203 IALQLKDVTSFDDGAVWLRYLVK 225


>gi|325292072|ref|YP_004277936.1| cytidine and deoxycytidylate deaminase [Agrobacterium sp. H13-3]
 gi|325059925|gb|ADY63616.1| cytidine and deoxycytidylate deaminase [Agrobacterium sp. H13-3]
          Length = 152

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 46/127 (36%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
            +  ++V DG VI R             HAE+  +  A E        GA  YVTLEPC 
Sbjct: 25  PIGAVLVMDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALEQERLPGADLYVTLEPC- 83

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGK 135
                  CA  I    IRR+    +DP       G+++           +   + ESE  
Sbjct: 84  -----TMCAAAISFARIRRLYYGAEDPKGGAVHSGVRFFSQPTCHHAPDVYSGLAESESA 138

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 139 EILRKFF 145


>gi|323448590|gb|EGB04487.1| putative deoxycytidine deaminase [Aureococcus anophagefferens]
          Length = 188

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 27/127 (21%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------------AYG 50
           +D  F S AL  +         +  V C+IV+D  V+  G                    
Sbjct: 59  WDEYFASMAL-LASARSPCDRLH--VGCVIVRDRRVLAMGYNGFFRNAPHTSIVAHGHEQ 115

Query: 51  GCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
              HAEV A+  A   G    GA+AY+T  PC +  ++      ++  GI+ V    D  
Sbjct: 116 ATVHAEVNAVSHAARTGIALDGASAYITHYPCVNCFKT------LVSAGIKEVRYIDDYR 169

Query: 108 DVRVSGR 114
           +  ++ +
Sbjct: 170 NDPINAQ 176


>gi|297582994|ref|YP_003698774.1| CMP/dCMP deaminase zinc-binding protein [Bacillus selenitireducens
           MLS10]
 gi|297141451|gb|ADH98208.1| CMP/dCMP deaminase zinc-binding protein [Bacillus selenitireducens
           MLS10]
          Length = 147

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 17/114 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQ 58
           +++    +M  A+  +R      + N     L+VKDG V+        TA     H E+ 
Sbjct: 1   MANTHEYWMRQAIELARASK--IAGNDPFGALLVKDGEVVMTATNQIHTATDPTHHPEIV 58

Query: 59  ALEEAG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
            + +        + +  T Y + EPC        C+  ++   + R+V  V   
Sbjct: 59  LVRDYCRQEGITDLKDVTLYTSCEPC------VMCSGAMVWSNLGRLVYSVSHE 106


>gi|72160431|ref|YP_288088.1| tRNA-adenosine deaminase [Thermobifida fusca YX]
 gi|71914163|gb|AAZ54065.1| tRNA-adenosine deaminase [Thermobifida fusca YX]
          Length = 150

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 45/122 (36%), Gaps = 18/122 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG----CPHAEVQALEEAGE 65
           M  AL  +      +S +  V  +++  DG+VIG G            HAEV AL  A  
Sbjct: 1   MRRALEEAEK--TSSSGDVPVGAVVLDPDGVVIGAGHNEREATGDPTAHAEVLALRAAAR 58

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                   G T  VTLEPC        CA  I+   I R++    D      G     + 
Sbjct: 59  RLGSWRLSGCTLAVTLEPC------TMCAGAIVLARIERLIYGARDERAGAVGSLWDVVR 112

Query: 121 QK 122
            +
Sbjct: 113 DR 114


>gi|145221806|ref|YP_001132484.1| CMP/dCMP deaminase, zinc-binding [Mycobacterium gilvum PYR-GCK]
 gi|315446457|ref|YP_004079336.1| tRNA-adenosine deaminase [Mycobacterium sp. Spyr1]
 gi|145214292|gb|ABP43696.1| tRNA-adenosine deaminase [Mycobacterium gilvum PYR-GCK]
 gi|315264760|gb|ADU01502.1| tRNA-adenosine deaminase [Mycobacterium sp. Spyr1]
          Length = 149

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 25/155 (16%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALE 61
           D   + AAL  +R           +  ++   +G  + R   A         HAE+ AL 
Sbjct: 3   DEDLIRAALDAARGAGPRDVP---IGAVVFDAEGTELARAANAREELGDPTAHAEILALR 59

Query: 62  EA------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            A      G    GAT  VT+EPC        CA  ++   + RVV    +P     G  
Sbjct: 60  AAALVHGDGWRLEGATLAVTVEPC------TMCAGALVMARVARVVFGAWEPKTGAVGSL 113

Query: 116 LQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQ 145
              +  + +     +   ++E+E    L  +  RQ
Sbjct: 114 WDVVRDRRLTHRPQVRGGVLEAECAAPLEEFFARQ 148


>gi|124008183|ref|ZP_01692880.1| cytosine deaminase [Microscilla marina ATCC 23134]
 gi|123986282|gb|EAY26104.1| cytosine deaminase [Microscilla marina ATCC 23134]
          Length = 154

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 52/157 (33%), Gaps = 27/157 (17%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           D  +M  A + +   +        V  ++V    +I R             HAE+ A+  
Sbjct: 3   DEFYMQQAYKEA--VIAYNKGEIPVGAVVVVQDKIIARAHNQTEQLLDVTAHAEILAVTG 60

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS----- 112
           A            T YVTLEPC        CA  I    + R+V    D     S     
Sbjct: 61  AANYLGAKYLNQCTMYVTLEPC------VMCAGAIAWSQLGRLVFGAYDVKRGFSRIESA 114

Query: 113 -----GRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
                 +  + L  K + V  ++E+E    L  +  +
Sbjct: 115 TEGTNNKVTKLLHPKTLQVGGVLENECAELLQRFFQK 151


>gi|229169074|ref|ZP_04296789.1| ComE operon protein 2 [Bacillus cereus AH621]
 gi|228614302|gb|EEK71412.1| ComE operon protein 2 [Bacillus cereus AH621]
          Length = 188

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 55/166 (33%), Gaps = 34/166 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M   S+D  FM+ +   S      T T  +V   IV+D  +I  G      GG       
Sbjct: 4   MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +   A  YVT  PC        C + II+ G+ 
Sbjct: 61  CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQ------CCKAIIQSGVT 114

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            V    D  +   +   ++   Q  + V  +        L      
Sbjct: 115 AVYYAQDYKNHPYA---VELFEQASVTVKHVPLEYDITSLEEQERH 157


>gi|255626047|gb|ACU13368.1| unknown [Glycine max]
          Length = 170

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 41/128 (32%), Gaps = 19/128 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
           +F++ A+  +   V      P    +IV++  ++               HAE+ A+ EA 
Sbjct: 17  KFLTMAIEEAYKAVESGHGRP-FGAVIVRNDEILSSCHNMVVRNADPTAHAEITAIREAC 75

Query: 65  EE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV---RVSGRGL 116
            +        +  Y + EPC      P C   I    I+++V                  
Sbjct: 76  RKLNQVELADSEIYASCEPC------PMCLSAIHFSKIKKLVYGAKAEAAVAIGFESIIA 129

Query: 117 QWLSQKGI 124
             L   G 
Sbjct: 130 DALKDTGF 137


>gi|160883688|ref|ZP_02064691.1| hypothetical protein BACOVA_01660 [Bacteroides ovatus ATCC 8483]
 gi|260170907|ref|ZP_05757319.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. D2]
 gi|293369917|ref|ZP_06616489.1| guanine deaminase [Bacteroides ovatus SD CMC 3f]
 gi|299146282|ref|ZP_07039350.1| guanine deaminase [Bacteroides sp. 3_1_23]
 gi|315919237|ref|ZP_07915477.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156110773|gb|EDO12518.1| hypothetical protein BACOVA_01660 [Bacteroides ovatus ATCC 8483]
 gi|292634999|gb|EFF53519.1| guanine deaminase [Bacteroides ovatus SD CMC 3f]
 gi|298516773|gb|EFI40654.1| guanine deaminase [Bacteroides sp. 3_1_23]
 gi|313693112|gb|EFS29947.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 156

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 18/111 (16%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGG----CPHAEVQALEEAGE 65
           M  A+  S+ +V           +I  K+G ++  GV           HAEV A+  A  
Sbjct: 7   MRKAIELSKENVENGGG--PFGAVIATKEGEIVATGVNRVTASCDPTAHAEVSAIRAAAA 64

Query: 66  E-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +       G   Y + EPC      P C   I    + ++    +  D + 
Sbjct: 65  KLGTFNLSGYEIYTSCEPC------PMCLGAIYWARLDKMYYGNNKTDAKN 109


>gi|255764464|ref|YP_003064771.2| Cytidine/deoxycytidylate deaminase, zinc-binding region [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254547815|gb|ACT56831.2| Cytidine/deoxycytidylate deaminase, zinc-binding region [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 149

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 41/108 (37%), Gaps = 17/108 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE--- 62
           FMS AL  ++    L +  P V  + V +  +I R             HAE+ A+     
Sbjct: 7   FMSCALEEAQNAA-LRNEIP-VGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCR 64

Query: 63  --AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
             + E       YVTLEPC        CA  I    IRR+     +P 
Sbjct: 65  ILSQEILPEVDLYVTLEPC------TMCAAAISLARIRRLYYGASNPK 106


>gi|148543876|ref|YP_001271246.1| ComE operon protein 2 [Lactobacillus reuteri DSM 20016]
 gi|184153276|ref|YP_001841617.1| dCMP deaminase [Lactobacillus reuteri JCM 1112]
 gi|194468431|ref|ZP_03074417.1| ComE operon protein 2 [Lactobacillus reuteri 100-23]
 gi|227364782|ref|ZP_03848831.1| competence protein ComEB [Lactobacillus reuteri MM2-3]
 gi|227545004|ref|ZP_03975053.1| competence protein ComEB [Lactobacillus reuteri CF48-3A]
 gi|300909961|ref|ZP_07127421.1| ComE operon protein comEB [Lactobacillus reuteri SD2112]
 gi|325682591|ref|ZP_08162108.1| competence protein comEB [Lactobacillus reuteri MM4-1A]
 gi|148530910|gb|ABQ82909.1| ComE operon protein 2 [Lactobacillus reuteri DSM 20016]
 gi|183224620|dbj|BAG25137.1| dCMP deaminase [Lactobacillus reuteri JCM 1112]
 gi|194453284|gb|EDX42182.1| ComE operon protein 2 [Lactobacillus reuteri 100-23]
 gi|227070241|gb|EEI08615.1| competence protein ComEB [Lactobacillus reuteri MM2-3]
 gi|227185021|gb|EEI65092.1| competence protein ComEB [Lactobacillus reuteri CF48-3A]
 gi|300892609|gb|EFK85969.1| ComE operon protein comEB [Lactobacillus reuteri SD2112]
 gi|324978430|gb|EGC15380.1| competence protein comEB [Lactobacillus reuteri MM4-1A]
          Length = 161

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 31/143 (21%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
           P   +D  FM  A   +           SV  ++V+D  +I  G                
Sbjct: 3   PRIDWDQYFMIQAALLASRSTCNRL---SVGAVLVRDKRIIAGGYNGSVAGDAHCIDEGC 59

Query: 54  -----------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                      HAE+ AL +    G  A GA+ YVT  PC        C + +++ GI+ 
Sbjct: 60  YLRDGHCVRTIHAEMNALLQCAKFGISADGASIYVTDFPCLQ------CTKSLLQTGIKE 113

Query: 100 VVVCVDDPDVRVSGRGLQWLSQK 122
           +    +  +   + + L+  +  
Sbjct: 114 INYIRNYHNDDYAMKLLKLKNVA 136


>gi|257057632|ref|YP_003135464.1| tRNA-adenosine deaminase [Saccharomonospora viridis DSM 43017]
 gi|256587504|gb|ACU98637.1| tRNA-adenosine deaminase [Saccharomonospora viridis DSM 43017]
          Length = 147

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 56/146 (38%), Gaps = 22/146 (15%)

Query: 12  SAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA---- 63
             AL F+   VG T+  P  A +   DG ++     A         HAEV AL EA    
Sbjct: 5   RVALGFAERAVG-TADVPIGAAVFSPDGRLLAGAHNARERLGDPTAHAEVLALREAARVH 63

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ---- 117
             G    G T  VT+EPC        CA  ++   + RVV    +P              
Sbjct: 64  GDGWRLEGCTLAVTVEPC------TMCAGALVLARVARVVFGAWEPRTGAVCSLWDVVRD 117

Query: 118 -WLSQKGIIVDRMMESEGKIFLHAYL 142
             L+ +  +V  ++ESE    L+ + 
Sbjct: 118 RRLNHRPEVVGGVLESECAALLNDFF 143


>gi|292491295|ref|YP_003526734.1| bifunctional deaminase-reductase domain protein [Nitrosococcus
           halophilus Nc4]
 gi|291579890|gb|ADE14347.1| bifunctional deaminase-reductase domain protein [Nitrosococcus
           halophilus Nc4]
          Length = 290

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 69/229 (30%), Gaps = 29/229 (12%)

Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP------ITGFISKNQVHLL 186
           EG              +  +      S D  I +             I           L
Sbjct: 25  EGLYLNQELHRLGTRSQPFVYTNFIASLDGRISLEHPRKRTRIVPDTIANPRDWRLFQEL 84

Query: 187 RAQSDAILVGIGTV--LADDPE---LTC------------RLNGLQEHSPMRIILDPHFK 229
            AQ+DA+L     +  LA +     L              R +      P  +++     
Sbjct: 85  AAQADALLTSGRYIRQLAQNVAQDILPVSEKPEYADLIQWRQSQGLAPQPAIVVISASLN 144

Query: 230 LSLDSKIIKTALLAPVIIVT-ENDDPVLALAFRKKNINIIYCD---CRDLKKLLTILVGR 285
           + +   ++      P+ + T    DP+     + K I +I          K L+  L   
Sbjct: 145 IPIPEILLNANR--PIYVATGSEADPLRVQELKAKGIQVIVAGKGLRVQGKTLIAALGQE 202

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
           G T+L    G  V  + +  + ++ + L  +  ++G     + LE   L
Sbjct: 203 GFTTLYAIAGPEVLKTLLADQSLNRLYLTHALRILGGESFDTLLEGERL 251


>gi|229013547|ref|ZP_04170680.1| ComE operon protein 2 [Bacillus mycoides DSM 2048]
 gi|229062025|ref|ZP_04199350.1| ComE operon protein 2 [Bacillus cereus AH603]
 gi|228717177|gb|EEL68852.1| ComE operon protein 2 [Bacillus cereus AH603]
 gi|228747707|gb|EEL97577.1| ComE operon protein 2 [Bacillus mycoides DSM 2048]
          Length = 188

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 55/166 (33%), Gaps = 34/166 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M   S+D  FM+ +   S      T T  +V   IV+D  +I  G      GG       
Sbjct: 4   MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +   A  YVT  PC        C + II+ G+ 
Sbjct: 61  CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQ------CCKAIIQSGVT 114

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            V    D  +   +   ++   Q  + V  +        L      
Sbjct: 115 AVYYAQDYKNHPYA---VELFEQASVTVKHVPLEYDITSLEEQERH 157


>gi|170746522|ref|YP_001752782.1| CMP/dCMP deaminase zinc-binding [Methylobacterium radiotolerans JCM
           2831]
 gi|170653044|gb|ACB22099.1| CMP/dCMP deaminase zinc-binding [Methylobacterium radiotolerans JCM
           2831]
          Length = 162

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 15/88 (17%)

Query: 30  SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            V   +V+DG V+          +    HAE+ A+  A      E   G   YVTLEPC 
Sbjct: 37  PVGAAVVRDGTVLAVAHNRPRELHDPTAHAEILAIRAACATLGTERLVGCDLYVTLEPC- 95

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                P CA  I    IRR+     DP 
Sbjct: 96  -----PMCAGAISFARIRRLYYGAADPK 118


>gi|325191113|emb|CCA25599.1| SUMO ligase putative [Albugo laibachii Nc14]
          Length = 182

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 38/121 (31%), Gaps = 19/121 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL------ 60
           M  AL  +     L      V C+ V    +I               HAE+ A+      
Sbjct: 1   MREALEEAERA--LVRGEVPVGCVAVYQNQIISFASNRTNELCNATKHAELVAIDYIVSN 58

Query: 61  -EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                   +  T YVT EPC        CA  +++C + RVV    +      G  L   
Sbjct: 59  YNNTRAIFQETTFYVTCEPCIM------CAAALLQCKVVRVVFGCQNFRFGGCGSVLSLH 112

Query: 120 S 120
            
Sbjct: 113 E 113


>gi|300122215|emb|CBK22788.2| unnamed protein product [Blastocystis hominis]
          Length = 288

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 50/149 (33%), Gaps = 35/149 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV-------------TAYG 50
           S+D  FM  A   +         N  V   IV     ++G G               +  
Sbjct: 125 SWDEYFMGLACLSAMRSK---DPNTQVGACIVNAYNQIVGIGYNGFPRGCSDDVLPWSRE 181

Query: 51  GCP----------HAEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
           G            HAE+ A+       ARG   YV+L PC++      C + II+ GI  
Sbjct: 182 GDNELDTKYMYVCHAEMNAILNINTANARGCKMYVSLFPCNN------CCKMIIQSGIVE 235

Query: 100 VVVCVD-DPDVRVSGRGLQWLSQKGIIVD 127
           V+   D   D  +S    +     G+   
Sbjct: 236 VIYLRDKYYDSNMSVASRRMFDMAGVKYT 264


>gi|125624972|ref|YP_001033455.1| dihydrofolate reductase family protein [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124493780|emb|CAL98772.1| conserved hypothetical protein; possible dihydrofolate reductase
           family protein [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300071772|gb|ADJ61172.1| dihydrofolate reductase family protein [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 173

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 3/112 (2%)

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
              T+    +L         NII+ D   L +L           + V GG  V   F+ +
Sbjct: 64  WPYTDKTSYILTHQEISATDNIIFIDKEKLTELSVNFADNDKN-IWVVGGGEVIKLFLEN 122

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
             VD + +  + +++G+ G+P     G  E+    +    +G  V L Y+ K
Sbjct: 123 HWVDELQVTIAPVLLGD-GVP-LFPSGNYEEKLQLIDTRTYGQFVELHYLVK 172


>gi|124023348|ref|YP_001017655.1| cytidine/deoxycytidylate deaminase [Prochlorococcus marinus str.
           MIT 9303]
 gi|123963634|gb|ABM78390.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
           marinus str. MIT 9303]
          Length = 163

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 21/164 (12%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEA-- 63
           +M   L  ++   GL    P  A ++  DG  IG G            HAE+ AL +A  
Sbjct: 6   WMLRLLTRAKQLGGL-GEVPVSAVVLDADGRCIGHGSNQRHRGRDPLGHAELIALRQAAW 64

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                     T  VTLEPC      P CA  + +  + +V+    DP     G  +    
Sbjct: 65  LRSDWRFNDCTLIVTLEPC------PMCAGALTQARMGQVIFAAHDPKRGGLGSTINLGD 118

Query: 121 QKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
                    ++  +ME E +  L A+  +Q ++     + +  +
Sbjct: 119 HPSAHHKMRVLGGVMEVEARQQLEAWFKQQRQRFHENEVTLTRT 162


>gi|297819466|ref|XP_002877616.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
           lyrata subsp. lyrata]
 gi|297323454|gb|EFH53875.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 232

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 59/169 (34%), Gaps = 38/169 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA--------------- 48
           S+D  FM+ A   +         N  V   +V ++G+++G G                  
Sbjct: 67  SWDDYFMAIAFLSAERSK---DPNRQVGACLVSQNGVILGIGYNGFPRGCSDDKLPWAKK 123

Query: 49  -YGGCP---------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
              G P         HAEV A+       A G   YVT+ PC+       CA+ I++ G+
Sbjct: 124 SRTGDPLETKYPYVCHAEVNAILNTNHASAAGQKLYVTMFPCNE------CAKIILQSGV 177

Query: 98  RRVVVCVDD--PDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
             V+  V+    D  V+      L     +  R  + E    L  +   
Sbjct: 178 AEVIYFVEKRLNDSDVAYVASHKLLSMANVKVRKHQPEMDQILIKFEEH 226


>gi|254580711|ref|XP_002496341.1| ZYRO0C16148p [Zygosaccharomyces rouxii]
 gi|238939232|emb|CAR27408.1| ZYRO0C16148p [Zygosaccharomyces rouxii]
          Length = 155

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 50/146 (34%), Gaps = 16/146 (10%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCPHAE 56
             S +D   M  A   +       +  P   CLI  +DG V+GRG            H E
Sbjct: 3   SASRWDGLGMDIAYEEALIG-YKENGVPIGGCLIDSRDGRVLGRGHNLRYQKNSATLHGE 61

Query: 57  VQALEEAGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           +  LE  G       R AT Y TL PC        C   I+  GI R V+   D      
Sbjct: 62  ISTLENCGRLPASVYRHATMYTTLSPCDM------CTGAIVMYGIPRCVIGEHDNFKSPG 115

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFL 138
              L+    + ++VD     +     
Sbjct: 116 EVYLESRGHQVVVVDDKRCKDLMKKF 141


>gi|282598641|ref|YP_003358738.1| gp35 [Mycobacterium phage Peaches]
 gi|255928168|gb|ACU41786.1| gp35 [Mycobacterium phage Peaches]
          Length = 198

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 46/139 (33%), Gaps = 40/139 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP---------- 53
           ++D  F+  A   +       S    V  ++VKD  V   G   A  G P          
Sbjct: 4   TWDEYFLGIARAAAERSDCERSK---VGAVVVKDRRVRATGYNGAPAGRPGCGTCPRRTS 60

Query: 54  -------------------HAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFII 93
                              HAE  AL     E+ RGA+ Y+T EPC        C++ I 
Sbjct: 61  NARPGVDSYSSGGTRCVAVHAEANALLYCDREDLRGASLYITREPCGD------CSKLID 114

Query: 94  ECGIRRVVVCVDDPDVRVS 112
             GI RVV   +       
Sbjct: 115 AAGIERVVYPFEWEKPEGC 133


>gi|255625685|gb|ACU13187.1| unknown [Glycine max]
          Length = 186

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 16/112 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           D +F+  A+  +   V      P    +IV +  ++ R             HAEV  + +
Sbjct: 31  DHKFLRIAVEEAYKGVDCEDGGP-FGAIIVCNDEIVARCHNMVLRNTDPTAHAEVTVIRK 89

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           A E+           Y + EPC      P C   I    ++R+V        
Sbjct: 90  ACEKLNQIELSDCEIYASCEPC------PMCFGAIHLSRVKRLVYGAKAEAA 135


>gi|195349159|ref|XP_002041114.1| GM15219 [Drosophila sechellia]
 gi|194122719|gb|EDW44762.1| GM15219 [Drosophila sechellia]
          Length = 160

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 48/161 (29%), Gaps = 25/161 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE- 62
           A FM  AL  +R      +    V C+ V  G V+ RG            HAE   ++  
Sbjct: 2   AAFMEEALVEARRAR--DAGEVPVGCVFVHGGKVVARGGNEVNVHRNATRHAEFICIDAI 59

Query: 63  ----------AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
                     A +     T  VT+EPC        C+  +   G++ ++   ++      
Sbjct: 60  LATCREKRLPARQLFSEITVVVTVEPCIM------CSAALHTLGVKEIIYGCENDRFGGK 113

Query: 113 G--RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSH 151
                   +  +  I   +   E    L  +          
Sbjct: 114 TVVDVAAVVGHRIEITGGVRADEAMALLKEFYKGDNPAAPP 154


>gi|312880695|ref|ZP_07740495.1| CMP/dCMP deaminase zinc-binding [Aminomonas paucivorans DSM 12260]
 gi|310783986|gb|EFQ24384.1| CMP/dCMP deaminase zinc-binding [Aminomonas paucivorans DSM 12260]
          Length = 170

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 49/158 (31%), Gaps = 43/158 (27%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------- 46
           +D  F+  AL  +     L      V  +IV+D  ++  G                    
Sbjct: 8   WDEYFLRIALVVASRSTCLRR---HVGAVIVRDHYMVSTGYNGAPRGVPHCAEVGCLRER 64

Query: 47  --------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                          H E+ AL +A   G    G   Y T EPCS       C + +I  
Sbjct: 65  LGIPSGERHEMCRGSHGEINALSQAAAMGVSTAGGILYCTHEPCSF------CTKALING 118

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
           GIR +V     PD            + G++  ++    
Sbjct: 119 GIREMVFLNPYPD----ELARALRREAGVLSRQVSLEA 152


>gi|332879651|ref|ZP_08447345.1| hypothetical protein HMPREF9074_03098 [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332682412|gb|EGJ55315.1| hypothetical protein HMPREF9074_03098 [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 237

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 59/153 (38%), Gaps = 15/153 (9%)

Query: 191 DAILVGIGTVLADDPELT-------CRLNGL--QEHSPMR--IILDPHFKLSLDSKIIKT 239
           DA + G  TV A  PE +        R   +   E    R  I+ DP   +   S  ++ 
Sbjct: 48  DAWMFGKNTVCAVFPEKSNKGNTPFSRTASVFMGERHSERMFIVSDPDGDILFTSSTLRG 107

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINI-IYCDCRDLKKLLTIL-VGRGVTSLLVEGGAA 297
             +  ++++  N         R   I+  +  D  DL   L       G+ S+ V+GG  
Sbjct: 108 DNI--LVVLGRNVTEEYLAFLRGIRISYAVVEDATDLHAGLEAANREFGIRSVSVQGGGI 165

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
           +  + +   ++D + L     + G  GIPS  E
Sbjct: 166 LNGALLKEGVIDELSLVVYPGIDGLAGIPSVFE 198


>gi|255530903|ref|YP_003091275.1| zinc-binding CMP/dCMP deaminase [Pedobacter heparinus DSM 2366]
 gi|255343887|gb|ACU03213.1| CMP/dCMP deaminase zinc-binding [Pedobacter heparinus DSM 2366]
          Length = 151

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 45/130 (34%), Gaps = 37/130 (28%)

Query: 1   MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------ 53
           M V  SF+  FM+ A   +     + +    V  ++ KD  +I  G              
Sbjct: 1   MTVKPSFNHIFMNLASDLAGRSHCVRA---QVGAVLTKDTRIISIGYNGPPAGTHNCDEE 57

Query: 54  ------------------HAEVQALE---EAGEEARGATAYVTLEPCSHYGRSPPCAQFI 92
                             HAE  A+    + G +  G+T Y TL PC        CA+ I
Sbjct: 58  WPEAGCARDSRGSCSLALHAEENAILYGIKNGSKIEGSTLYTTLSPCI------ACARLI 111

Query: 93  IECGIRRVVV 102
           +  GIR V  
Sbjct: 112 LSSGIRVVHY 121


>gi|86741404|ref|YP_481804.1| tRNA-adenosine deaminase [Frankia sp. CcI3]
 gi|86568266|gb|ABD12075.1| tRNA-adenosine deaminase [Frankia sp. CcI3]
          Length = 196

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 40/130 (30%), Gaps = 26/130 (20%)

Query: 8   ARFMSAALRFSRWHVGLTST-----NPSVACLIV-KDGIVIGRGVTAY----GGCPHAEV 57
             +M  AL+ +      T       +P V  +I   DG  I               +AE+
Sbjct: 44  EPWMRRALKLA-----TTLPDPGADDPPVGAVIYGPDGTEIAAAHHDRERTADPTAYAEI 98

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL +A +          T   TLEP          A  I+   I R+++   D      
Sbjct: 99  LALRQAAQALGTWRLTDCTLVTTLEPG------TMSAGAIVLARIPRLIIGTWDKYNGAV 152

Query: 113 GRGLQWLSQK 122
                 +  +
Sbjct: 153 CSLWDVVRDR 162


>gi|326918570|ref|XP_003205561.1| PREDICTED: deoxycytidylate deaminase-like [Meleagris gallopavo]
          Length = 190

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 35/148 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        +  V   IV  +  ++G G                  
Sbjct: 26  EWPEYFMAVAFLSAQRSK---DPSSQVGACIVNSENKIVGIGYNGMPNGCSDDALPWTRT 82

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G + YV L PC+       CA+ II+ GI+ 
Sbjct: 83  AAHRLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNE------CAKLIIQAGIKE 136

Query: 100 VVVCVDDPDVRVSGRGLQWLSQ-KGIIV 126
           V+   D     +     + +    GI+ 
Sbjct: 137 VIFMSDKYHDSIEMTAARRMFDLAGIVY 164


>gi|57530125|ref|NP_001006444.1| deoxycytidylate deaminase [Gallus gallus]
 gi|53133480|emb|CAG32069.1| hypothetical protein RCJMB04_17c11 [Gallus gallus]
          Length = 190

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 35/148 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        +  V   IV  +  ++G G                  
Sbjct: 26  EWPEYFMAVAFLSAQRSK---DPSSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWTRA 82

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G + YV L PC+       CA+ II+ GI+ 
Sbjct: 83  AAHSLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNE------CAKLIIQAGIKE 136

Query: 100 VVVCVDDPDVRVSGRGLQWLSQ-KGIIV 126
           V+   D     +     + +    GI+ 
Sbjct: 137 VIFMSDKYHDSIEMTAARRMFDLAGIVY 164


>gi|328857268|gb|EGG06385.1| hypothetical protein MELLADRAFT_86571 [Melampsora larici-populina
           98AG31]
          Length = 171

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 23/126 (18%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTA----YGGCPHAEVQALE--- 61
           MS A++ +       +  P V C+ +   DG +I +G            HAE  AL    
Sbjct: 1   MSEAIKMAEEA-FSANEIP-VGCVFINELDGKLISKGRNRTNETRNASLHAEFDALSSLL 58

Query: 62  ------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
                     + +  T YVT+EPC        C+  + + GI++V     +      G  
Sbjct: 59  PNPKNPNLKTDFKNLTLYVTVEPCLM------CSSALRQIGIKKVFFGCSNDRFGGCGGV 112

Query: 116 LQWLSQ 121
           +   + 
Sbjct: 113 ISIHND 118


>gi|257456686|ref|ZP_05621876.1| dCMP deaminase [Treponema vincentii ATCC 35580]
 gi|257445879|gb|EEV20932.1| dCMP deaminase [Treponema vincentii ATCC 35580]
          Length = 163

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 53/157 (33%), Gaps = 43/157 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           ++D  FM      ++     T       C+I +D  ++  G                   
Sbjct: 10  TWDEYFMEVCRAIAKRA---TCDRGRSGCVIARDNQLLVTGYVGAPRGLPHCDDVGHQFK 66

Query: 47  ---TAYGG-------CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFII 93
                 G          HAE  A+ +A   G    GAT Y  + PC        CA  II
Sbjct: 67  KVQHEDGSVSQHCVRTVHAEQNAICQAAKRGISIDGATLYCKMTPC------RTCAMLII 120

Query: 94  ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
            CGI+RV+      D   S   +    Q G+I++ + 
Sbjct: 121 NCGIKRVIAEKRYHD---SADSIAMFKQAGVILEHLN 154


>gi|15807611|ref|NP_296350.1| deoxycytidylate deaminase [Deinococcus radiodurans R1]
 gi|6460460|gb|AAF12167.1|AE002092_5 deoxycytidylate deaminase, putative [Deinococcus radiodurans R1]
          Length = 145

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 42/130 (32%), Gaps = 27/130 (20%)

Query: 20  WHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP---------------HAEVQALEEA 63
           W          V   I+ +   V+G G                       HAEV AL  A
Sbjct: 17  WATRSADPKVQVGACILDRHHRVVGVGYNGRAAGEPNERESLAQGASGYIHAEVNALLAA 76

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIEC-GIRRVVVCVDDPDVRVS----GRGLQW 118
                G T YVT EPCS       CA+ I+    + RVV      +          G + 
Sbjct: 77  NWNGEGHTLYVTHEPCSV------CARLIVNSRRVGRVVFATPYRETARVEAGLPSGAEI 130

Query: 119 LSQKGIIVDR 128
           L   GI V+ 
Sbjct: 131 LRSAGIEVED 140


>gi|33862872|ref|NP_894432.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
           marinus str. MIT 9313]
 gi|33634788|emb|CAE20774.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
           marinus str. MIT 9313]
          Length = 163

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 61/164 (37%), Gaps = 21/164 (12%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEA-- 63
           +M   L  ++  +G     P  A ++  DG  IG G            HAE+ AL +A  
Sbjct: 6   WMLRLLTRAKQ-LGDFGEVPVSAVVLDADGRCIGHGSNQRHRRRDPLGHAELIALRQAAW 64

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                     T  VTLEPC      P CA  + +  + +V+    DP     G  +    
Sbjct: 65  LRSDWRFNDCTLIVTLEPC------PMCAGALTQARMGQVIFAAHDPKRGGLGSTIHLGE 118

Query: 121 QKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
                    ++  +ME E +  L A+  +Q ++     + +  +
Sbjct: 119 HPSAHHKMRVLGGVMEVEARQQLEAWFKQQRQRFHENEVTLTRT 162


>gi|158424013|ref|YP_001525305.1| cytidine and deoxycytidylate deaminase family protein [Azorhizobium
           caulinodans ORS 571]
 gi|158330902|dbj|BAF88387.1| cytidine and deoxycytidylate deaminase family protein [Azorhizobium
           caulinodans ORS 571]
          Length = 147

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/111 (31%), Positives = 44/111 (39%), Gaps = 19/111 (17%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             FM  AL  +R           V  ++V++  VI R             HAE+Q L  A
Sbjct: 3   ETFMQTALSEARAAAER--GEVPVGAVLVRNSQVIARDGNRTRELSDPTAHAEMQVLR-A 59

Query: 64  GEEARGA------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           G +A GA        YVTLEPC+       CA  I    IRR+     DP 
Sbjct: 60  GAKALGAERLLTCDLYVTLEPCAM------CAGAISFARIRRLYYGALDPK 104


>gi|163942082|ref|YP_001646966.1| ComE operon protein 2 [Bacillus weihenstephanensis KBAB4]
 gi|163864279|gb|ABY45338.1| ComE operon protein 2 [Bacillus weihenstephanensis KBAB4]
          Length = 185

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 55/166 (33%), Gaps = 34/166 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M   S+D  FM+ +   S      T T  +V   IV+D  +I  G      GG       
Sbjct: 1   MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +   A  YVT  PC        C + II+ G+ 
Sbjct: 58  CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQ------CCKAIIQSGVT 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            V    D  +   +   ++   Q  + V  +        L      
Sbjct: 112 AVYYAQDYKNHPYA---VELFEQASVTVKHVPLEYDITSLEEQERH 154


>gi|239815773|ref|YP_002944683.1| CMP/dCMP deaminase zinc-binding [Variovorax paradoxus S110]
 gi|239802350|gb|ACS19417.1| CMP/dCMP deaminase zinc-binding [Variovorax paradoxus S110]
          Length = 369

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 20/128 (15%)

Query: 30  SVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  ++V++G  +  G       +    HAE+ AL             G   +VTLEPC+
Sbjct: 33  PVGAVLVRNGQFVASGRNTPVAQHDPSAHAEINALRAGAAALGNYRLDGCELFVTLEPCA 92

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGK 135
                  CA  ++   + RVV    DP    +G  L       L+ +  +   ++ +E  
Sbjct: 93  M------CAGAMLHARLARVVFGAADPKTGAAGSVLDLFAEPRLNHRTQVQGGVLAAECS 146

Query: 136 IFLHAYLT 143
             L  +  
Sbjct: 147 ALLQGFFQ 154


>gi|194900476|ref|XP_001979783.1| GG22115 [Drosophila erecta]
 gi|190651486|gb|EDV48741.1| GG22115 [Drosophila erecta]
          Length = 160

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 49/161 (30%), Gaps = 25/161 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE- 62
           A FM  AL  +R      +    V C+ V  G V+ RG            HAE   ++  
Sbjct: 2   AAFMEEALVEARRAR--DAGEVPVGCVFVHGGKVVARGGNEVNVHRNATRHAEFICIDAI 59

Query: 63  ----------AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
                     A +     T  VT+EPC        C+  +   G++ ++   ++      
Sbjct: 60  LASCRERRLPARQLFSEITVVVTVEPCIM------CSAALHTLGVKEIIYGCENDRFGGK 113

Query: 113 G--RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSH 151
                   + Q+  I   +   E    L  +          
Sbjct: 114 TVVDVAAVVGQRIEITGGVRADEAMALLKDFYKGDNPAAPP 154


>gi|116694008|ref|YP_728219.1| putative cytosine/adenosine deaminase [Ralstonia eutropha H16]
 gi|113528507|emb|CAJ94854.1| Putative Cytosine/adenosine deaminase [Ralstonia eutropha H16]
          Length = 145

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 45/123 (36%), Gaps = 21/123 (17%)

Query: 11  MSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA- 63
           M  A+R +      G          ++V DG  +  G    V ++    HAE++A+  A 
Sbjct: 1   MREAVRLAAANRDRGAR----PFGAVLVLDGEAVATGVNDIVHSHDPTTHAEMEAVRAAA 56

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                 + RG+  Y +  PC      P C   +   G++ V    D+ D    G   +  
Sbjct: 57  RKLGRPDLRGSVVYASGHPC------PMCLAAMTMAGVQAVYYAFDNHDAAPYGMSSEAA 110

Query: 120 SQK 122
            Q 
Sbjct: 111 YQA 113


>gi|259507330|ref|ZP_05750230.1| riboflavin biosynthesis protein RibD [Corynebacterium efficiens
          YS-314]
 gi|259165041|gb|EEW49595.1| riboflavin biosynthesis protein RibD [Corynebacterium efficiens
          YS-314]
          Length = 52

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 8  ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHA 55
             +  A+  S   VG TS NP V  +I+  DG + G G T   G  HA
Sbjct: 4  EEALQLAIEASEEVVGTTSPNPPVGAVILDADGELAGIGATQPPGGAHA 52


>gi|290958302|ref|YP_003489484.1| zinc-binding protein [Streptomyces scabiei 87.22]
 gi|260647828|emb|CBG70933.1| putative zinc-binding protein [Streptomyces scabiei 87.22]
          Length = 161

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 19/149 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY--GGCP--HAEVQALEE 62
             +++ A+  +R   GL      +   +   DG ++GRG       G P  HAE  A   
Sbjct: 7   RAWLATAVEEAR--TGLAEGGIPIGAALYGPDGTLLGRGHNRRVQDGDPSTHAETAAFRA 64

Query: 63  AGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           AG +   RG T   TL PC +      C+  + + GI RVVV     +      G  WL+
Sbjct: 65  AGRQRTYRGTTMVTTLSPCWY------CSGLVRQFGISRVVVG----EATTFHGGHDWLA 114

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           + G+ +  + + E    +  ++ ++    
Sbjct: 115 EHGVEIVLLDDPECVALMRDFVRQRPALW 143


>gi|326522122|dbj|BAK04189.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 233

 Score = 57.2 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 55/150 (36%), Gaps = 39/150 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
           S+D  FM+ A   +         N  V   +V ++GI++G G                  
Sbjct: 72  SWDDYFMAIAFLSAERSK---DPNRQVGACLVSQEGIILGIGYNGFPRGCSDDKLPWAKK 128

Query: 47  --------TAYGGCPHAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                   T Y    HAEV A+       A G   YVT+ PC+       CA+ II+ G+
Sbjct: 129 SARGDPLETKYPYVVHAEVNAILNTNHASAAGQKLYVTMFPCNE------CAKIIIQSGV 182

Query: 98  RRVVVCVD---DPDVRVSGRGLQWLSQKGI 124
             V+  V+   D    V       LS  G+
Sbjct: 183 SEVIYFVEKRIDNSDHVYVASHNLLSMAGV 212


>gi|239609238|gb|EEQ86225.1| deoxycytidylate deaminase [Ajellomyces dermatitidis ER-3]
          Length = 356

 Score = 57.2 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 47/148 (31%), Gaps = 41/148 (27%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP--- 53
           +D  FM  A   +            V C++V+   V+  G             GGCP   
Sbjct: 186 WDQYFMQLA-SLAAQRSNCMKR--RVGCVLVRGKRVMSTGYNGTPRNTKNCNEGGCPRCN 242

Query: 54  ---------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                          HAE  AL EAG E    GA  Y    PC        C+  I + G
Sbjct: 243 SGEGGGAALSTCLCIHAEENALLEAGRERIGEGAILYCNTCPCL------TCSVKIAQLG 296

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           I  VV        + +      L + G+
Sbjct: 297 ISEVVYSQSYNMDKETAS---ILQEAGV 321


>gi|193212376|ref|YP_001998329.1| CMP/dCMP deaminase zinc-binding [Chlorobaculum parvum NCIB 8327]
 gi|193085853|gb|ACF11129.1| CMP/dCMP deaminase zinc-binding [Chlorobaculum parvum NCIB 8327]
          Length = 173

 Score = 57.2 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 50/158 (31%), Gaps = 44/158 (27%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------------T 47
             FM  A   SR     T  +  +  +IV+D  ++  G                     T
Sbjct: 29  EYFMCVAHLISRRA-TCTRGH--IGAVIVRDNNILSTGYNGAPSGLPHCNETNCKIYRST 85

Query: 48  AYGGCP--------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
              G          HAE+ A+ +A   G   + A  Y+T  PC H      C + +I  G
Sbjct: 86  HPDGTVEENCVNTIHAEINAIAQAAKHGVSIKDADIYITASPCIH------CLKVLINVG 139

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
           I+ +                + L   GI + ++     
Sbjct: 140 IKTIYY----DKPYKIEHIAELLRLSGIKLVQVHAENC 173


>gi|145231731|ref|XP_001399339.1| DRAP deaminase [Aspergillus niger CBS 513.88]
 gi|134056243|emb|CAK37500.1| unnamed protein product [Aspergillus niger]
          Length = 240

 Score = 57.2 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 56/163 (34%), Gaps = 39/163 (23%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIV-----------KDGIVIGRGVTAY-GGCPHAE 56
            +M+  L  +R    L  TN  V  L++              I++  G T    G  HAE
Sbjct: 20  HYMTQCLALARKAPAL-PTNFRVGALLLSRSTTDTTPTYSSDILLSTGYTMELAGNTHAE 78

Query: 57  VQALEE-----------------AGEEARGATAYVTLEPCS-HYGRSPPCAQFIIEC--- 95
              L                     +  R    YVT+EPC      + PC + II     
Sbjct: 79  QCCLSNYASVHGVPDEQVHTVLPHNDPERKLVMYVTMEPCGKRLSGNAPCVERIINTRQG 138

Query: 96  ----GIRRVVVCVDDPDVRVSGRG-LQWLSQKGIIVDRMMESE 133
               GI++V   V +P   V     ++ L + G+  + +   E
Sbjct: 139 GEGRGIQKVYFGVKEPGTFVGESEGVRRLEEAGVEWEVVPGLE 181


>gi|332367208|gb|EGJ44944.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
           SK1059]
          Length = 155

 Score = 57.2 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 30/119 (25%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
           ++D  F + AL  +      T     V  ++VKD  VI  G      G            
Sbjct: 7   AWDQYFAAQALLIANRS---TCKRAKVGAVLVKDNKVISTGYNGSVSGTEHCIDHECLVI 63

Query: 54  --------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAEV A+ +  +    +G TAYVT  PC +      C + +++ G +RVV 
Sbjct: 64  DGHCVRTLHAEVNAILQGADRGVPKGFTAYVTHFPCLN------CTKQLLQVGCKRVVY 116


>gi|330837260|ref|YP_004411901.1| dCMP deaminase [Spirochaeta coccoides DSM 17374]
 gi|329749163|gb|AEC02519.1| dCMP deaminase [Spirochaeta coccoides DSM 17374]
          Length = 161

 Score = 57.2 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 35/138 (25%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-------------TAYG 50
           S+D  FM  AL  +         +  V   IV  +  ++G G                  
Sbjct: 9   SWDEYFMGVALLSAMRSK---DPSTQVGACIVSPEKRIVGVGYNGFPSGCNDDDLPWERE 65

Query: 51  GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           G           HAE+ A+  +    +G++ YV L PC+       CA+ II+ GI  +V
Sbjct: 66  GAFLETKYPFVCHAELNAILNSSGNLKGSSLYVALFPCNE------CAKAIIQAGIVEIV 119

Query: 102 VCVDDP---DVRVSGRGL 116
              D     D   + + +
Sbjct: 120 YLSDKYADTDAVKASKRM 137


>gi|213408261|ref|XP_002174901.1| deoxycytidylate deaminase [Schizosaccharomyces japonicus yFS275]
 gi|212002948|gb|EEB08608.1| deoxycytidylate deaminase [Schizosaccharomyces japonicus yFS275]
          Length = 320

 Score = 57.2 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 46/152 (30%), Gaps = 47/152 (30%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
           +DA FM  A   +            V C++V+D  VI  G     G P            
Sbjct: 172 WDAYFMQLA-SLASMRSNCMKR--RVGCVLVRDQRVIATGY---NGTPRGLRNCNEGGCT 225

Query: 54  ------------------HAEVQALEEAGEEARG--ATAYVTLEPCSHYGRSPPCAQFII 93
                             HAE  AL EAG E  G     Y    PC        C+  I 
Sbjct: 226 RCNSAAKSGIGLGTCLCLHAEENALLEAGRERIGDRGILYCNTCPCL------TCSVKIA 279

Query: 94  ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           + GI  VV         +  +    L   G++
Sbjct: 280 QVGISEVVYSTSYS---MDNQSADILKAGGVV 308


>gi|50306895|ref|XP_453423.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642557|emb|CAH00519.1| KLLA0D08074p [Kluyveromyces lactis]
          Length = 340

 Score = 57.2 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 55/162 (33%), Gaps = 41/162 (25%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
           +D  FM  A   +            V C+IV+D  V+  G     G P            
Sbjct: 182 WDTYFMKLA-NLAASRANCMKR--RVGCVIVRDCRVVATGY---NGTPRNMKNCNQGGCS 235

Query: 54  ----------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                           HAE  AL EAG +  G  A +  + C        C+  I++ GI
Sbjct: 236 RCNDGDDKSLHTCLCLHAEENALLEAGRDRVGPNAILYCDTCPCL----TCSVKIVQTGI 291

Query: 98  RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
           + VV        R+  + L+ L    + V +    + +  +H
Sbjct: 292 KEVVYSHSY---RMDEQSLKVLRDGKVTVRQHKLIDERTTIH 330


>gi|167625318|ref|YP_001675612.1| deaminase-reductase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167355340|gb|ABZ77953.1| bifunctional deaminase-reductase domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 184

 Score = 57.2 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 65/208 (31%), Gaps = 41/208 (19%)

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIG 198
             + E      + IA S D  I         +        S        A+ DA+++G  
Sbjct: 1   MFKREITMPNIVYIATSLDGFIADKHNKVDWLHDIPNPEGSDLGFSDFMARIDALIMGRN 60

Query: 199 TVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
           T+                     I+L        +  +           V  N    +  
Sbjct: 61  TLE--------------------IVLSFGIDWPYNKPVF----------VLSNTLTEVPA 90

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
               K   I      +L+ ++  L  +G  +L ++GG      F+   L+D +I+    +
Sbjct: 91  ELEGKAFII----NGELEHIVQQLNSKGYQNLYIDGG-KTIQGFLQRDLIDELIITTIPV 145

Query: 319 VIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
           ++G GGIP    E      F  V+ +  
Sbjct: 146 LLG-GGIP-LFGELAAPLKFKHVKAERL 171


>gi|332297977|ref|YP_004439899.1| CMP/dCMP deaminase zinc-binding protein [Treponema brennaborense
           DSM 12168]
 gi|332181080|gb|AEE16768.1| CMP/dCMP deaminase zinc-binding protein [Treponema brennaborense
           DSM 12168]
          Length = 166

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 51/158 (32%), Gaps = 43/158 (27%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCP----------- 53
           +D  FM      ++     T       C+I +D  ++  G   +  G P           
Sbjct: 14  WDDYFMEICRTVAKRA---TCDRGRSGCVIARDNRILVTGYVGSPAGLPHCDDVGHLLKK 70

Query: 54  ----------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G    GAT Y  + PC        C   II 
Sbjct: 71  MVHENGTVTQHCVRTVHAEQNAICQAAKNGISIDGATLYCKMTPC------RTCTMLIIN 124

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
           CGI+RVV      D   S   L      G+ +  + + 
Sbjct: 125 CGIKRVVCEKRYHD---SADSLTMFEAAGVEIVHLNDD 159


>gi|241760863|ref|ZP_04758952.1| CMP/dCMP deaminase zinc-binding [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241374482|gb|EER63943.1| CMP/dCMP deaminase zinc-binding [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 160

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 40/110 (36%), Gaps = 22/110 (20%)

Query: 11  MSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGVTA-----YGGCPHAEVQALEEA 63
           M  AL  +    H G       V  ++   G +I     A          HAEV+AL +A
Sbjct: 17  MRHALLQAESAAHQGEV----PVGAVVTFKGKIIAVAGNAMQPPFIDPTGHAEVRALRQA 72

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                         +VTLEPC+       CA  I    IRR+    DDP 
Sbjct: 73  ASVLGSSRLDQCDLWVTLEPCAM------CAGAIATARIRRLYYGADDPK 116


>gi|302866154|ref|YP_003834791.1| bifunctional deaminase-reductase domain-containing protein
           [Micromonospora aurantiaca ATCC 27029]
 gi|302569013|gb|ADL45215.1| bifunctional deaminase-reductase domain protein [Micromonospora
           aurantiaca ATCC 27029]
          Length = 358

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%)

Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
               DL   L  L  RG+  LL EGG  +  +   + LVD + L  + ++ G G
Sbjct: 257 AGQVDLVAGLAELRRRGLGQLLCEGGPHLFGALTAADLVDELCLTVAPLLAGAG 310


>gi|317138553|ref|XP_003189058.1| DRAP deaminase [Aspergillus oryzae RIB40]
          Length = 179

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 55/153 (35%), Gaps = 33/153 (21%)

Query: 10  FMSAALRFSRWHVGLTSTNP---SVACLIVKD--GIVIGRGVTAY--------GGCPHAE 56
           +M  AL  +R    L+  +P    V  ++V      ++  G +           G  HAE
Sbjct: 18  YMECALEKAR----LSPPSPTKFCVGAVLVDADRNEILSTGYSMELPGDRPGDPGNTHAE 73

Query: 57  VQALEEAGEE------------ARGATAYVTLEPCSHY-GRSPPCAQFI--IECGIRRVV 101
                +  ++             R    Y T+EPCS     +  C Q I  +   ++ V 
Sbjct: 74  QCCFIKVADQHNVPEAELVEVLPRNTVLYTTMEPCSRRLSGNRTCVQRILGLASSLKVVY 133

Query: 102 VCVDDPDVRVSGRG-LQWLSQKGIIVDRMMESE 133
           V + +P+  ++     + L   G+ V  +   E
Sbjct: 134 VGITEPETFIADNTGRKILEDAGVQVICVEGME 166


>gi|195501916|ref|XP_002098000.1| GE10118 [Drosophila yakuba]
 gi|194184101|gb|EDW97712.1| GE10118 [Drosophila yakuba]
          Length = 160

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 23/114 (20%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE- 62
           A FM  AL  +R      +    V C+ V  G V+ RG            HAE   ++  
Sbjct: 2   AAFMEEALVEARRAR--DAGEVPVGCVFVHGGKVVARGGNEVNVHRNATRHAEFICIDAI 59

Query: 63  ----------AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
                     A +     T  VT+EPC        C+  +   G++ ++   ++
Sbjct: 60  LASCRERRLPARQLFSEITVVVTVEPCIM------CSAALHTLGVKEIIYGCEN 107


>gi|156387793|ref|XP_001634387.1| predicted protein [Nematostella vectensis]
 gi|156221469|gb|EDO42324.1| predicted protein [Nematostella vectensis]
          Length = 96

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 14/85 (16%)

Query: 9  RFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEE 62
          +F+  A++ S+     GL +       +I KD  +I               HAEV A+ +
Sbjct: 7  QFLERAVQLSKEGSDQGLGTP---FGAVITKDNKIIAETANLSFVNCDPTAHAEVSAIRQ 63

Query: 63 AGEEAR-----GATAYVTLEPCSHY 82
          A    +     G   Y +  PC+  
Sbjct: 64 ACSALKSRDLTGCDLYTSCYPCAMC 88


>gi|139438469|ref|ZP_01771985.1| Hypothetical protein COLAER_00975 [Collinsella aerofaciens ATCC
           25986]
 gi|133776008|gb|EBA39828.1| Hypothetical protein COLAER_00975 [Collinsella aerofaciens ATCC
           25986]
          Length = 186

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 50/152 (32%), Gaps = 36/152 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGC----------- 52
           S+D  FMS A+   R        N  V   I   +  ++  G                  
Sbjct: 30  SWDEFFMSVAIAAQRRSK---DPNTQVGACIANTNHRILSVGYNGTPSALNDDFFPWGTS 86

Query: 53  -----------PHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE  A+     + ++  G+T YVTL PC        CA+ + + G+ 
Sbjct: 87  DDPLQDKHNYVVHAEANAVLNYRGSLKDLEGSTVYVTLFPCHD------CAKILAQVGVG 140

Query: 99  RVVVCVDDP-DVRVSGRGLQWLSQKGIIVDRM 129
            VV   +   D        + L   GI   ++
Sbjct: 141 EVVYLDNKYADTDDGRISRRILDSCGISYRQV 172


>gi|320354083|ref|YP_004195422.1| CMP/dCMP deaminase zinc-binding protein [Desulfobulbus
          propionicus DSM 2032]
 gi|320122585|gb|ADW18131.1| CMP/dCMP deaminase zinc-binding protein [Desulfobulbus
          propionicus DSM 2032]
          Length = 173

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 13/88 (14%)

Query: 3  VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG-VT-----AYGGCPHAE 56
          + S   +FM+ AL  +R    L      V C +V +  ++ RG              HAE
Sbjct: 1  MMSEHEQFMAVALEEARLA--LAEGEFPVGCAMVANNGIVARGRRHNSIEGYRNEIDHAE 58

Query: 57 VQALE-----EAGEEARGATAYVTLEPC 79
          V  L      + G +    T Y T+EPC
Sbjct: 59 VVTLRRLIAEQPGLDLATVTVYTTMEPC 86


>gi|119356771|ref|YP_911415.1| CMP/dCMP deaminase, zinc-binding [Chlorobium phaeobacteroides DSM
           266]
 gi|119354120|gb|ABL64991.1| CMP/dCMP deaminase, zinc-binding protein [Chlorobium
           phaeobacteroides DSM 266]
          Length = 173

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 52/158 (32%), Gaps = 44/158 (27%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------------T 47
             FMS A   SR     T T   +  +IV+D  ++  G                     T
Sbjct: 29  EYFMSVAHLISRRA---TCTRAHIGAVIVRDNNILSTGYNGAPSGLPHCDETNCRIYRST 85

Query: 48  AYGGCP--------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
              G          HAE+ A+ +A   G   + A  Y+T  PC H      C + +I  G
Sbjct: 86  HPDGTVEENCVNTIHAEINAIAQAAKHGVSIKDADIYITASPCIH------CLKVLINVG 139

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
           I+ +                + +   GI + ++   E 
Sbjct: 140 IKTIYY----DKPYKLEHIDELVRLSGIRLVQVHGDEQ 173


>gi|258545205|ref|ZP_05705439.1| tRNA-specific adenosine deaminase [Cardiobacterium hominis ATCC
           15826]
 gi|258519557|gb|EEV88416.1| tRNA-specific adenosine deaminase [Cardiobacterium hominis ATCC
           15826]
          Length = 151

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 46/129 (35%), Gaps = 21/129 (16%)

Query: 30  SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-----EEARGATAYVTLEPCS 80
            +  ++V +G +I          +    HAE+ AL   G        RG + YVTLEPC 
Sbjct: 24  PIGAILVANGEIIASAHNRTVSDHDPTAHAEILALRAGGQALGNHRMRGVSLYVTLEPCI 83

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI------IVDRMMESEG 134
                  C   +I+  I R+V    D  +   G        + +      I   ++E   
Sbjct: 84  M------CTGALIQARIDRLVFGAYDSRIGACGSAFDLARHRRLNHHIHEIKGGVLEEAC 137

Query: 135 KIFLHAYLT 143
           +  L  +  
Sbjct: 138 REQLQRFFQ 146


>gi|261187467|ref|XP_002620157.1| deoxycytidylate deaminase [Ajellomyces dermatitidis SLH14081]
 gi|239594207|gb|EEQ76788.1| deoxycytidylate deaminase [Ajellomyces dermatitidis SLH14081]
 gi|327356490|gb|EGE85347.1| deoxycytidylate deaminase [Ajellomyces dermatitidis ATCC 18188]
          Length = 356

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 47/148 (31%), Gaps = 41/148 (27%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP--- 53
           +D  FM  A   +            V C++V+   V+  G             GGCP   
Sbjct: 186 WDQYFMQLA-SLAAQRSNCMKR--RVGCVLVRGKRVMSTGYNGTPRNTKNCNEGGCPRCN 242

Query: 54  ---------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                          HAE  AL EAG E    GA  Y    PC        C+  I + G
Sbjct: 243 SGEGGGAALSTCLCIHAEENALLEAGRERIGEGAILYCNTCPCL------TCSVKIAQLG 296

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           I  VV        + +      L + G+
Sbjct: 297 ISEVVYSQSYNMDKETAS---ILQEAGV 321


>gi|167648591|ref|YP_001686254.1| CMP/dCMP deaminase zinc-binding [Caulobacter sp. K31]
 gi|167351021|gb|ABZ73756.1| CMP/dCMP deaminase zinc-binding [Caulobacter sp. K31]
          Length = 146

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 43/111 (38%), Gaps = 23/111 (20%)

Query: 11  MSAALRFSRWHV--GLTSTNPSVACLIVK--DGIVIGRGVTAYGG----CPHAEVQALEE 62
           M+ AL  +R     G T     V  +I+    G ++ R      G      HAE+ A+  
Sbjct: 1   MAVALDEARAAAQAGET----PVGAVILDPASGEILARAGNGPIGAHDPTAHAEISAIRL 56

Query: 63  AGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           A  +         T  VTLEPC+       CA  I    I RVV   +DP 
Sbjct: 57  AAAKLGNYRLTDLTLVVTLEPCAM------CAGAISHARIGRVVFGAEDPK 101


>gi|225456327|ref|XP_002283817.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297734422|emb|CBI15669.3| unnamed protein product [Vitis vinifera]
          Length = 229

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 60/167 (35%), Gaps = 40/167 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA--------------- 48
           S+D  FM+ A   +         N  V   +V ++G+++G G                  
Sbjct: 70  SWDDYFMAIAFLSAERSK---DPNRQVGACLVSQNGVILGIGYNGFPRGCSDDKLPWAKK 126

Query: 49  -YGGCP---------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
              G P         HAEV A+       A G   YVT+ PC+       CA+ II+ G+
Sbjct: 127 SKTGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNE------CAKIIIQSGV 180

Query: 98  RRVVVCVD---DPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
             V+  V+   +          + LS  G +  R  + +    L  +
Sbjct: 181 SEVIYFVEKRLNNSQVAYIASHKLLSMAG-VKVRKHQPQMDQILIKF 226


>gi|226355797|ref|YP_002785537.1| tRNA(Ile)-lysidine synthetase [Deinococcus deserti VCD115]
 gi|259533711|sp|C1D1Q9|TILS_DEIDV RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|226317787|gb|ACO45783.1| putative tRNA(Ile)-lysidine synthetase [Deinococcus deserti VCD115]
          Length = 533

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 45/122 (36%), Gaps = 18/122 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----CPHAEVQALEEAGE 65
           M  AL  +R    L    P V  +++   G +IG G            HAE+ AL  A  
Sbjct: 383 MGEALGLAREAA-LAQEVP-VGAVVLGPGGRIIGSGRNTSRADSDMTRHAELAALRAATA 440

Query: 66  EA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           E       G T  VTLEPC      P C    +E  + R+V    +P     G     LS
Sbjct: 441 ELGTAYLTGCTLVVTLEPC------PMCLGAALEARVERIVYGASNPKAGALGGVSDLLS 494

Query: 121 QK 122
             
Sbjct: 495 SH 496


>gi|322389277|ref|ZP_08062837.1| cytidine and deoxycytidylate deaminase [Streptococcus parasanguinis
           ATCC 903]
 gi|321144021|gb|EFX39439.1| cytidine and deoxycytidylate deaminase [Streptococcus parasanguinis
           ATCC 903]
          Length = 160

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 53/150 (35%), Gaps = 33/150 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           ++D  F + AL  S       +    V  ++VKD  VI  G                   
Sbjct: 12  AWDEYFAAQALLISNRATCNRAK---VGAVLVKDNKVIATGYNGSVSGTDHCLEDGCLMV 68

Query: 54  --------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                   HAEV A+ +  E    +G TAYVT  PC +      C + +++ G +RVV  
Sbjct: 69  EGHCVRTIHAEVNAILQGAERGIPKGFTAYVTHFPCLN------CTKQLLQVGCKRVVYI 122

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
                   +        +K + +  +   E
Sbjct: 123 HQYRIDEYAE---YLYREKEVELVHLPIEE 149


>gi|26346577|dbj|BAC36937.1| unnamed protein product [Mus musculus]
          Length = 178

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 35/146 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        +  V   IV  +  ++G G                  
Sbjct: 14  EWPEYFMAVAFLSAQRSK---DPSFQVGACIVNTENKIVGIGYNGMPNGCSDDLLPWRRT 70

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G + YV L PC+       CA+ II+ GI+ 
Sbjct: 71  AENKLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNE------CAKLIIQAGIKE 124

Query: 100 VVVCVDDPDVRVSGRGLQWL-SQKGI 124
           V+   D           + L    G+
Sbjct: 125 VIFMSDKYHDSEETTAARLLFKLAGV 150


>gi|323304625|gb|EGA58388.1| Dcd1p [Saccharomyces cerevisiae FostersB]
          Length = 145

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 43/122 (35%), Gaps = 36/122 (29%)

Query: 30  SVACLIVKDGIVIGRGVTAYG---------GCP----------------HAEVQALEEAG 64
            V C+IV++  VI  G              GCP                HAE  AL EAG
Sbjct: 17  RVGCVIVRECRVIATGYNGTPRHLTNCFNGGCPRCNDGDSRNLHTCLCLHAEENALLEAG 76

Query: 65  EEARG--ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
            +  G  AT Y    PC        C+  I++ GI  VV        R+     + L   
Sbjct: 77  RDRVGQNATLYCDTCPCL------TCSVKIVQTGISEVVYSQSY---RMDEESFKVLKNA 127

Query: 123 GI 124
           GI
Sbjct: 128 GI 129


>gi|312142508|ref|YP_003993954.1| CMP/dCMP deaminase zinc-binding protein [Halanaerobium sp.
           'sapolanicus']
 gi|311903159|gb|ADQ13600.1| CMP/dCMP deaminase zinc-binding protein [Halanaerobium sp.
           'sapolanicus']
          Length = 151

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 41/132 (31%), Gaps = 39/132 (29%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
           M    +   FM  A   ++    L      V  ++VKD  V+  G               
Sbjct: 1   MERPDWHEYFMEMAKLVAKRATCLRR---RVGAVLVKDRKVLATGYNGAPKDITHCEVTG 57

Query: 47  -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE   + +A   G +  G+T Y T +PC        C +
Sbjct: 58  CLRTELDIPSGERHEICRGVHAEQNLVAQAAFHGVKTEGSTVYCTNQPCII------CTK 111

Query: 91  FIIECGIRRVVV 102
            +I  G+ ++  
Sbjct: 112 ILINAGVNKIYY 123


>gi|160937837|ref|ZP_02085196.1| hypothetical protein CLOBOL_02729 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439276|gb|EDP17029.1| hypothetical protein CLOBOL_02729 [Clostridium bolteae ATCC
           BAA-613]
          Length = 181

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 53/152 (34%), Gaps = 37/152 (24%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT---------------- 47
           ++D  FM  AL   R        +  V   IV +D  ++  G                  
Sbjct: 27  TWDEYFMGVALLSGRRSK---DPSTQVGACIVSQDNKILSMGYNGFPKGCSDDEFPWGKE 83

Query: 48  ---------AYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                     Y    H+E+ A+    G    G+  YVTL PC+       CA+ II+ GI
Sbjct: 84  NEKEDPYNSKYFYSTHSELNAILNYRGGSLEGSKLYVTLFPCNE------CAKAIIQSGI 137

Query: 98  RRVVVCVDDP-DVRVSGRGLQWLSQKGIIVDR 128
           + +V   D   D        + L+  G+   +
Sbjct: 138 KTIVYREDKYADTPAVMASKRMLNAAGVRYYQ 169


>gi|84497975|ref|ZP_00996772.1| putative deaminase [Janibacter sp. HTCC2649]
 gi|84381475|gb|EAP97358.1| putative deaminase [Janibacter sp. HTCC2649]
          Length = 158

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 13/85 (15%)

Query: 5  SFDARFMSAALRFS-RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
          + D +++  A+  +     G          ++V+ G VIG G            HAEV A
Sbjct: 2  TDDQKWLDRAIDLAIANVSGGGGP---FGAVVVRGGDVIGEGTNRVTLDLDPTAHAEVVA 58

Query: 60 LEEAGEE-----ARGATAYVTLEPC 79
          L  A  E       GAT Y + EPC
Sbjct: 59 LRNACREVGDFSLPGATVYASCEPC 83


>gi|326330934|ref|ZP_08197234.1| guanine deaminase [Nocardioidaceae bacterium Broad-1]
 gi|325951292|gb|EGD43332.1| guanine deaminase [Nocardioidaceae bacterium Broad-1]
          Length = 159

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 17/112 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           D  ++  A+  +  +V           +I++DGI++G G            HAE+ A+  
Sbjct: 3   DTMWLEQAVALAVRNVNNGGG--PFGAIILRDGILLGTGQNRVTRDLDPSAHAEIVAIRS 60

Query: 63  AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           A +EA      G T Y + EPC     +   A       + RVV   D  D 
Sbjct: 61  ACKEADSFSLAGCTLYTSCEPCPMCLATALWA------RLDRVVYAADRDDA 106


>gi|300172852|ref|YP_003772017.1| ComE operon protein 2 [Leuconostoc gasicomitatum LMG 18811]
 gi|299887230|emb|CBL91198.1| ComE operon protein 2 [Leuconostoc gasicomitatum LMG 18811]
          Length = 160

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 61/162 (37%), Gaps = 31/162 (19%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
           S+D  F++ A   S      T T   V  +IV++  +I  G      G P          
Sbjct: 7   SWDQYFIAQAAILSTRS---TCTRLHVGAVIVQNNRIISSGYNGSVSGTPHCTDVGDLIV 63

Query: 54  --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  AL +A   G    GA  YVT  PC H      C + +++ GI+++  
Sbjct: 64  DGHCIRAVHAEQNALMQAAQMGISVDGAEVYVTDVPCVH------CTKLLLQAGIQKINF 117

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
             D  +   +   L         V    ++  +I LH +++ 
Sbjct: 118 MRDYHNDSFAEELLAQKHVILKQVPFSEQTASQIDLHQFISY 159


>gi|226503799|ref|NP_001152254.1| deoxycytidylate deaminase [Zea mays]
 gi|195654307|gb|ACG46621.1| deoxycytidylate deaminase [Zea mays]
 gi|223948705|gb|ACN28436.1| unknown [Zea mays]
          Length = 228

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 56/150 (37%), Gaps = 39/150 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG------------- 50
           S+D  FM+ A   +         N  V   +V ++GI++G G   +              
Sbjct: 69  SWDDYFMAIAFLSAERSK---DPNRQVGACLVSQEGIILGIGYNGFPRGCSDDKLPWAKK 125

Query: 51  ---GCP---------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
              G P         HAEV A+       A G   YVT+ PC+       CA+ II+ G+
Sbjct: 126 SASGDPLETKFPYVVHAEVNAILNTNHASAAGQKLYVTMFPCNE------CAKIIIQSGV 179

Query: 98  RRVVVCVDDPDVRVSG---RGLQWLSQKGI 124
             V+  V+      +       + LS  G+
Sbjct: 180 SEVIYFVEKKIDNSAHVYVASHKLLSMAGV 209


>gi|195627622|gb|ACG35641.1| deoxycytidylate deaminase [Zea mays]
          Length = 228

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 56/150 (37%), Gaps = 39/150 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG------------- 50
           S+D  FM+ A   +         N  V   +V ++GI++G G   +              
Sbjct: 69  SWDDYFMAIAFLSAERSK---DPNRQVGACLVSQEGIILGIGYNGFPRGCSDDKLPWAKK 125

Query: 51  ---GCP---------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
              G P         HAEV A+       A G   YVT+ PC+       CA+ II+ G+
Sbjct: 126 SASGDPLETKFPYVVHAEVNAILNTNHASAAGQKLYVTMFPCNE------CAKIIIQSGV 179

Query: 98  RRVVVCVDDPDVRVSG---RGLQWLSQKGI 124
             V+  V+      +       + LS  G+
Sbjct: 180 SEVIYFVEKKIDNSAHVYVASHKLLSMAGV 209


>gi|116694743|ref|YP_728954.1| cytosine deaminase-related enzyme [Ralstonia eutropha H16]
 gi|113529242|emb|CAJ95589.1| cytosine deaminase-related enzyme [Ralstonia eutropha H16]
          Length = 155

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 20/112 (17%)

Query: 8   ARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALE 61
             ++  ++R +        T        ++V+DG V+ R V           HAE+QA+ 
Sbjct: 5   EAYLLDSIRLAMENVRERNTWP---FGAVVVRDGEVLARAVNQVDATCDPSAHAEMQAVR 61

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            A       +  G T Y +  PCS       C   +   G++ V     + D
Sbjct: 62  AASRALGKPDLSGCTVYASGYPCSM------CLSAMYLAGVKAVYYAYSNED 107


>gi|145355155|ref|XP_001421833.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582072|gb|ABP00127.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 125

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 36/125 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
           S+D  FMS A   ++        N  V   IV KD +++G G                  
Sbjct: 6   SWDDYFMSVAFLSAQRSK---DPNKQVGACIVGKDKLILGVGYNGFPRGCPDNALPWSKK 62

Query: 47  --------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                   T Y    HAE+ A+  +      G + +VT+ PC+       CA+ +I+ GI
Sbjct: 63  SANDDPLETKYAYVCHAEMNAIMNKNSASVAGGSLFVTMYPCNE------CAKLVIQAGI 116

Query: 98  RRVVV 102
           + VV 
Sbjct: 117 KEVVY 121


>gi|291086751|ref|ZP_06571654.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Clostridium sp.
           M62/1]
 gi|291076832|gb|EFE14196.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Clostridium sp.
           M62/1]
          Length = 233

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 57/145 (39%), Gaps = 11/145 (7%)

Query: 221 RIILDPHFKLSLDSKII--KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL--K 276
            + +DP  KL   S ++  +      + ++TE          R+  I+ I     DL  +
Sbjct: 83  YVSVDPSGKLGWKSSVLTYQDTTAHVLEVLTEKASTAYRAFLRRLGISYIIAGAEDLDYE 142

Query: 277 KLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
             +  L    G+ +L++ GG  +  SF+ + + D + +  +    G    P+  E     
Sbjct: 143 IAMRKLKELFGIETLMLGGGGVLNWSFMQAGMCDEVSIVMTAAADGSSETPALFETRGGL 202

Query: 336 KNFMCVR--RDYF----GSDVCLEY 354
            +   VR   ++     GS V L Y
Sbjct: 203 ASDSPVRFQLEHLEIKEGSSVWLRY 227


>gi|113952793|ref|YP_730770.1| cytidine/deoxycytidylate deaminase family protein [Synechococcus
           sp. CC9311]
 gi|113880144|gb|ABI45102.1| cytidine/deoxycytidylate deaminase family protein [Synechococcus
           sp. CC9311]
          Length = 203

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 45/125 (36%), Gaps = 20/125 (16%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG------VTAYGGCPHAEVQALE 61
             +M   +  +R   G     P  A ++   G  IG G           G  HAE+ A+ 
Sbjct: 40  QAWMGILIERARR-FGERGEVPVSAVVLDHHGRCIGHGINQRELHHDPLG--HAELMAVR 96

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           +A            T  VTLEPC      P CA  +++  + +V+    DP     G  +
Sbjct: 97  QACRLRGDWRLNDCTLLVTLEPC------PMCAGALVQARVGQVIFAATDPKRGAMGSTI 150

Query: 117 QWLSQ 121
              + 
Sbjct: 151 NLATH 155


>gi|227551296|ref|ZP_03981345.1| competence protein ComEB [Enterococcus faecium TX1330]
 gi|257887587|ref|ZP_05667240.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,141,733]
 gi|257896083|ref|ZP_05675736.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium Com12]
 gi|227179576|gb|EEI60548.1| competence protein ComEB [Enterococcus faecium TX1330]
 gi|257823641|gb|EEV50573.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,141,733]
 gi|257832648|gb|EEV59069.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium Com12]
          Length = 179

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 51/147 (34%), Gaps = 34/147 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            +D  FM+ A+  S            V   +V++  +I  G                   
Sbjct: 26  PWDQYFMAQAVLLSLRSTCTRLE---VGATLVREKRIIAGGYNGAVSGDVHCIDEGCYIV 82

Query: 54  --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE+ AL +    G    G+  YVT  PC        C + +++ G++ +  
Sbjct: 83  DGHCLRTIHAEMNALLQCAKLGIPTEGSEIYVTHFPCL------ACTKALLQAGVKGINY 136

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRM 129
             D  +   +   ++ L   GI V ++
Sbjct: 137 LHDYRNDPYAQALIEQL---GISVHQV 160


>gi|197119397|ref|YP_002139824.1| deoxycytidylate deaminase [Geobacter bemidjiensis Bem]
 gi|253699854|ref|YP_003021043.1| dCMP deaminase [Geobacter sp. M21]
 gi|197088757|gb|ACH40028.1| deoxycytidylate deaminase [Geobacter bemidjiensis Bem]
 gi|251774704|gb|ACT17285.1| dCMP deaminase [Geobacter sp. M21]
          Length = 151

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 55/162 (33%), Gaps = 43/162 (26%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
           M   S+D  F+      ++    L      V  ++VKD  ++  G               
Sbjct: 1   MGRPSWDEYFIEITRLVAKRSTCLRR---QVGAVLVKDKNILATGYNGAPSGTAHCLDIG 57

Query: 47  -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE  A+ +A   G    GAT Y    PC        C++
Sbjct: 58  CLREKMGIPSGERHELCRGLHAEQNAIIQAAKHGTSIEGATLYCNTMPCII------CSK 111

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
            +I  GI+RVV     PD        + + + G++V++  E 
Sbjct: 112 MVINSGIKRVVYLSGYPDQLAE----EMIRESGVLVEKYEEP 149


>gi|317142986|ref|XP_001819233.2| deoxycytidylate deaminase [Aspergillus oryzae RIB40]
          Length = 351

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 45/149 (30%), Gaps = 41/149 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-----TAY----GGCP-- 53
           ++D  FM  A   +            V C++V++  VI  G              GCP  
Sbjct: 192 NWDQYFMQLA-SLAAQRSNCMKR--RVGCVLVRECRVISTGYNGTPRHLRNCNEAGCPRC 248

Query: 54  ----------------HAEVQALEEAG-EEARGAT-AYVTLEPCSHYGRSPPCAQFIIEC 95
                           HAE  AL EAG E  R  T  Y    PC        C   I + 
Sbjct: 249 NRGEGGGVGLSTCLCLHAEENALLEAGRERIREGTILYCDTCPCL------TCTVKIAQV 302

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           GI  VV         +       L   G+
Sbjct: 303 GISEVVYSQGY---NMDQDSAAILKSAGV 328


>gi|169627373|ref|YP_001701022.1| cytidine/deoxycytidylate deaminase family protein [Mycobacterium
           abscessus ATCC 19977]
 gi|169239340|emb|CAM60368.1| Cytidine/deoxycytidylate deaminase family protein [Mycobacterium
           abscessus]
          Length = 152

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 52/154 (33%), Gaps = 25/154 (16%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAY----GGCPHAEVQA 59
             D   + AAL  +R           +  +I   DG  + R   A         HAEV A
Sbjct: 4   PDDEALIRAALVAAREAGSQDVP---IGAVIYAADGTELARAANARERLGDPTAHAEVLA 60

Query: 60  LEEA------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           L  A      G    GAT  VT+EPC        CA  ++   + RVV    +P     G
Sbjct: 61  LRAAAAKHGDGWRLEGATLAVTVEPC------TMCAGALVLARVGRVVFGAWEPKTGAVG 114

Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
                +       +  +   ++E E    L  + 
Sbjct: 115 SLWDVVRDRRQAHRPEVRGGVLEHECAALLERFF 148


>gi|227529052|ref|ZP_03959101.1| competence protein ComEB [Lactobacillus vaginalis ATCC 49540]
 gi|227351064|gb|EEJ41355.1| competence protein ComEB [Lactobacillus vaginalis ATCC 49540]
          Length = 161

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 31/136 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------------Y 49
            +D  FM  A   +           SV  ++V+D  +I  G                   
Sbjct: 6   DWDQYFMIQAALLASRSTCNRL---SVGAVLVRDKRIIAGGYNGSVSGDAHCIDDGCYLR 62

Query: 50  GG----CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
            G      HAE+ A+ +    G    GA+ YVT  PC        C + +++ GI+ +  
Sbjct: 63  DGHCVRTIHAEMNAILQCAKFGISTDGASLYVTDFPCLQ------CTKSLLQAGIKEINY 116

Query: 103 CVDDPDVRVSGRGLQW 118
             +  +   + + ++ 
Sbjct: 117 IRNYHNDEYAMKLIKL 132


>gi|312869046|ref|ZP_07729223.1| ComE operon protein 2 [Lactobacillus oris PB013-T2-3]
 gi|311095472|gb|EFQ53739.1| ComE operon protein 2 [Lactobacillus oris PB013-T2-3]
          Length = 163

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 31/136 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------------Y 49
            +D  FM  A   +      T    SV  ++V+D  +I  G                   
Sbjct: 6   DWDQYFMVQAALLASRS---TCKRLSVGAVLVRDKRIIAGGYNGSVSGDDHCIDEGCYLR 62

Query: 50  GG----CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
            G      HAE+ A+ +    G    GA+ YVT  PC        C + +++ GI+ +  
Sbjct: 63  DGHCVRTIHAEMNAILQCARFGMSTDGASLYVTDFPCLQ------CTKSLLQAGIKEINY 116

Query: 103 CVDDPDVRVSGRGLQW 118
             +  +   + + ++ 
Sbjct: 117 IRNYHNDDYAMKLIKL 132


>gi|317494530|ref|ZP_07952943.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917460|gb|EFV38806.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 152

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 18/115 (15%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQ 58
           +SS D  ++  AL  +   V           +IV++G V+   V      G P  HAE+ 
Sbjct: 1   MSSHDE-YLQRALALAAESVEQGGR--PFGAVIVRNGEVVAEAVNTIHLNGDPTAHAELN 57

Query: 59  ALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            + +          R    Y + +PC      P C   +   G++ V     + D
Sbjct: 58  GIRDVSTRHGSTALRECVVYASGQPC------PMCLSAMYLTGVQAVYFANGNQD 106


>gi|189485251|ref|YP_001956192.1| deoxycytidylate deaminase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287210|dbj|BAG13731.1| deoxycytidylate deaminase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 163

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 50/156 (32%), Gaps = 43/156 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D  FM  A   S     +      V  +IV+D  ++  G                   
Sbjct: 11  SWDEYFMKLAWLVSERSTCVRH---HVGAVIVRDKRILTTGYNGAATDMQDCISLGCLRN 67

Query: 47  ---------TAYGGCPHAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +    G   + +T Y T  PC        CA+  + 
Sbjct: 68  TLNILSGQRHEICRAIHAEQNAIIQGGYHGINIKDSTLYCTHSPC------VLCAKITVN 121

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
            GI+RV+  ++ PD        +  S  GI    + 
Sbjct: 122 AGIKRVIANIEYPD----NTFKELFSVTGIEFSTLQ 153


>gi|325662502|ref|ZP_08151105.1| hypothetical protein HMPREF0490_01845 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471198|gb|EGC74423.1| hypothetical protein HMPREF0490_01845 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 159

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 18/109 (16%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGR----GVTAYGGCPHAEV-QALE 61
             ++  A+  S+   G  + N     L+V KDG +I       +T      HAE   A  
Sbjct: 6   EYYLRRAIEISKEARG--AGNTPFGALLVNKDGEIIMEQGNIEITEKICTGHAEATLAAR 63

Query: 62  EAGEEAR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
            + E ++      T Y T EPC+       CA  I    I RVV  + +
Sbjct: 64  ASHEYSKEYLWDCTLYTTAEPCAM------CAGAIYWANIGRVVYGMTE 106


>gi|299532573|ref|ZP_07045963.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
           S44]
 gi|298719520|gb|EFI60487.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
           S44]
          Length = 164

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 23/120 (19%)

Query: 3   VSSFD-ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCP 53
           +S  D  +++  ++R +    +     T        ++V+DG V+ R V           
Sbjct: 1   MSKQDSEKYLLESIRLAMGNVKGRESATWP---FGAVLVRDGKVLARAVNQVDDLCDPTA 57

Query: 54  HAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+QAL  A +     +  G+  Y +  PCS       C   ++  G+++V     + D
Sbjct: 58  HAEMQALRIAAKALGSTDLSGSVMYASGYPCSM------CHTAMLLAGVKQVYFAYSNED 111


>gi|255954833|ref|XP_002568169.1| Pc21g11370 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589880|emb|CAP96034.1| Pc21g11370 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 331

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 45/145 (31%), Gaps = 38/145 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-- 53
           ++D  FM  A   +            V C++V++  VI  G             GGCP  
Sbjct: 190 NWDQYFMQLA-SLAAQRSNCMKR--RVGCVLVRESRVISTGYNGTPRHLQNCNQGGCPRC 246

Query: 54  ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                           HAE  AL EAG E    GA  Y    PC        C   I + 
Sbjct: 247 NRGDGGGAGLSTCLCLHAEENALLEAGRERIREGAILYCDTCPCL------TCTVKIAQV 300

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLS 120
           GI  VV            + L  + 
Sbjct: 301 GISEVVYSQGYNMDNDVSQCLSVMR 325


>gi|157092991|gb|ABV22150.1| cytidine/deoxycytidylate deaminase [Perkinsus chesapeaki]
          Length = 295

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 42/116 (36%), Gaps = 16/116 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
           ++  D  FM+AA   +   V L    P     +V +G+ +  G            HAEV 
Sbjct: 16  ITKVDECFMTAACMSANAGVILCHGGP-FGASVVHNGMPVSCGHNTVLFDKDPTCHAEVN 74

Query: 59  ALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           A+  A       E      Y T EPC      P C   I+  G++ + V  D    
Sbjct: 75  AIRHAVRDLGRSELSDCVLYTTCEPC------PMCWGAIMASGLKVIYVGADRHCA 124


>gi|116075283|ref|ZP_01472543.1| hypothetical protein RS9916_27024 [Synechococcus sp. RS9916]
 gi|116067480|gb|EAU73234.1| hypothetical protein RS9916_27024 [Synechococcus sp. RS9916]
          Length = 159

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 37/110 (33%), Gaps = 15/110 (13%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
           S  D   M  A+R  R    +  T      ++ KDG V+     +         HAEV A
Sbjct: 3   SDQDQTLMREAIRLMRDAGVVKKTGGPFGAVVAKDGEVVAAAGNSVVRDLDPSAHAEVNA 62

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
           +  A +     +  G   Y + E C     +   A      GIR V    
Sbjct: 63  IRAACKKLGTWDLSGCVMYTSCECCPMCYATAYWA------GIRTVFYAA 106


>gi|238501998|ref|XP_002382233.1| deoxycytidylate deaminase, putative [Aspergillus flavus NRRL3357]
 gi|220692470|gb|EED48817.1| deoxycytidylate deaminase, putative [Aspergillus flavus NRRL3357]
          Length = 343

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 45/149 (30%), Gaps = 41/149 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-----TAY----GGCP-- 53
           ++D  FM  A   +            V C++V++  VI  G              GCP  
Sbjct: 192 NWDQYFMQLA-SLAAQRSNCMKR--RVGCVLVRECRVISTGYNGTPRHLRNCNEAGCPRC 248

Query: 54  ----------------HAEVQALEEAG-EEARGAT-AYVTLEPCSHYGRSPPCAQFIIEC 95
                           HAE  AL EAG E  R  T  Y    PC        C   I + 
Sbjct: 249 NRGEGGGVGLSTCLCLHAEENALLEAGRERIREGTILYCDTCPCL------TCTVKIAQV 302

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           GI  VV         +       L   G+
Sbjct: 303 GISEVVYSQGY---NMDQDSAAILKSAGV 328


>gi|145219913|ref|YP_001130622.1| CMP/dCMP deaminase, zinc-binding [Prosthecochloris vibrioformis DSM
           265]
 gi|145206077|gb|ABP37120.1| CMP/dCMP deaminase, zinc-binding protein [Chlorobium
           phaeovibrioides DSM 265]
          Length = 180

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 51/154 (33%), Gaps = 44/154 (28%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------------T 47
             FMS A   S+     T  +  +  +IV+D  ++  G                     T
Sbjct: 30  EYFMSVARLISQRA-TCTRGH--IGAVIVRDNNILSTGYNGAPSGLPHCNETNCRIYRST 86

Query: 48  AYGGCP--------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
              G          HAE+ A+ +A   G   + A  Y+T  PC H      C + +I  G
Sbjct: 87  HPDGTVEENCVNTIHAEINAIAQAAKHGVSIKDADIYITASPCIH------CLKVLINVG 140

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           I+ +                + L   GI + ++ 
Sbjct: 141 IKTIYY----EKPYKIEHISELLRLSGIRLVQVQ 170


>gi|311992960|ref|YP_004009827.1| Cd dCMP deaminase [Acinetobacter phage Acj61]
 gi|295815249|gb|ADG36175.1| Cd dCMP deaminase [Acinetobacter phage Acj61]
          Length = 184

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 59/188 (31%), Gaps = 64/188 (34%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
           M  SS    FM  A   S+    ++     V  +I K+G +I  G               
Sbjct: 1   MKPSS----FMQIAYLVSQESKCVSWK---VGAVIAKNGRIISTGYNGTREGGVNCCDHA 53

Query: 47  TAY--------------------------------GGCPHAEVQAL---EEAGEEARGAT 71
                                                  HAE+ A+    + G    GAT
Sbjct: 54  HEQGWTEQRYNPVPPHVNQVVLKNEFREVHSAWSSAHEIHAELNAILFAAKNGLPIDGAT 113

Query: 72  AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
            YVTL PC        CA+ I++ GI+++V        R      Q L   G+ V ++ +
Sbjct: 114 MYVTLSPCRE------CAKSILQTGIKKLVYSELYD--RNQPGWDQELIDAGVEVHQLPK 165

Query: 132 SEGKIFLH 139
           S+      
Sbjct: 166 SKLTSLNW 173


>gi|296446445|ref|ZP_06888389.1| CMP/dCMP deaminase zinc-binding [Methylosinus trichosporium OB3b]
 gi|296256080|gb|EFH03163.1| CMP/dCMP deaminase zinc-binding [Methylosinus trichosporium OB3b]
          Length = 183

 Score = 56.8 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 43/128 (33%), Gaps = 20/128 (15%)

Query: 30  SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            V   IV++G +I               HAE+ A+  A      E       YVTLEPC+
Sbjct: 59  PVGATIVRNGAIIAVAGNRTLRDRDPTAHAEMLAIRAACATLRTERLTDCDLYVTLEPCA 118

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGK 135
                  CA  I    IRR+    +DP       G +            +   + E E  
Sbjct: 119 M------CAAAISFARIRRLYFGAEDPKGGGVEHGARVFSQKTCHHAPEVYGGLREREAA 172

Query: 136 IFLHAYLT 143
             L A+  
Sbjct: 173 ELLRAFFQ 180


>gi|328943526|ref|ZP_08240991.1| tRNA-specific adenosine deaminase [Atopobium vaginae DSM 15829]
 gi|327491495|gb|EGF23269.1| tRNA-specific adenosine deaminase [Atopobium vaginae DSM 15829]
          Length = 237

 Score = 56.8 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 15/97 (15%)

Query: 30  SVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEE-----ARGATAYVTLEPCS 80
            +  ++V +  ++         ++    HAE  A+ +A ++           YVTLEPC 
Sbjct: 110 PIGAVVVCNNTILSAAHNLRQHSHNPSDHAEFIAMLQAAKKLDSWHLERCCVYVTLEPCL 169

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
                  CA  ++   I R V    D      G    
Sbjct: 170 M------CAGLMLNARIARCVFGAYDQKAGACGSLYN 200


>gi|114778358|ref|ZP_01453205.1| Pyrimidine reductase, riboflavin biosynthesis, RibD [Mariprofundus
           ferrooxydans PV-1]
 gi|114551321|gb|EAU53878.1| Pyrimidine reductase, riboflavin biosynthesis, RibD [Mariprofundus
           ferrooxydans PV-1]
          Length = 283

 Score = 56.8 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 63/202 (31%), Gaps = 33/202 (16%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFIS------KNQVHLLRAQSDAIL---------- 194
            I      S D  I M    S       S            L AQSD +L          
Sbjct: 35  FIYANYIASLDGRIAMEKADSGEFEVPASIANPRDWRLYQELAAQSDVMLTSARYFRQLA 94

Query: 195 ---------VGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
                    VG G   AD      R     +  P  ++L     L L +  +++     V
Sbjct: 95  KGCAQDLLPVGEGDDYADLVRW--RREHGLKPQPDVMVLSSSLDLPLAA--LQSLTDRQV 150

Query: 246 IIVT-ENDDPVLALAFRKKNINIIYCDCRDLKK---LLTILVGRGVTSLLVEGGAAVAHS 301
           IIVT  + D             ++      + +   L  +L+  G  S  +  G  V  +
Sbjct: 151 IIVTGSSSDANKRALLEAAGFPVLLAGDGRIVEGGRLKQLLIEHGYRSAYMIAGPEVHGA 210

Query: 302 FINSRLVDSIILYRSQIVIGEG 323
            +++ ++D + L     ++G  
Sbjct: 211 LLSAGVLDELFLTTHLSLLGGD 232


>gi|325962140|ref|YP_004240046.1| tRNA-adenosine deaminase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468227|gb|ADX71912.1| tRNA-adenosine deaminase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 157

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 50/139 (35%), Gaps = 31/139 (22%)

Query: 29  PSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR---------------- 68
           P  A +I  DG V+G G            HAEV A+ EA E  R                
Sbjct: 18  PIGAVVIGPDGAVLGSGRNQREELGDPTAHAEVVAIREAAERLRQLSLNGGGRGDGWRLS 77

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI---- 124
             T  VTLEPC+       CA  I+   I RVV    D     +G     L ++ +    
Sbjct: 78  DCTLIVTLEPCAM------CAGAIVLARIPRVVFGAWDEKAGAAGSVFDVLRERRLNHWV 131

Query: 125 -IVDRMMESEGKIFLHAYL 142
            +   + E+E    L  + 
Sbjct: 132 EVYPGVREAECAALLREFF 150


>gi|255034628|ref|YP_003085249.1| bifunctional deaminase-reductase domain-containing protein
           [Dyadobacter fermentans DSM 18053]
 gi|254947384|gb|ACT92084.1| bifunctional deaminase-reductase domain protein [Dyadobacter
           fermentans DSM 18053]
          Length = 194

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 26/178 (14%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPIT---GFISKNQVHLLRAQSDAILVGIGTVLADDP 205
              + L++ +S D  I         +        K  V  +    D IL+G        P
Sbjct: 1   MRKLKLQVQMSIDGFISGPNGEMDWLVFDWSEDVKKYVEEITKPVDTILLGRNLATGFIP 60

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
                     + +P                  + A     I+ +E    V +    K   
Sbjct: 61  HWAA--VAEDDKNPE-----------------QDAG----IVYSETHKIVFSKTLLKSEW 97

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           N    +  +L + +T +       ++V GGA    + I   LVD + L+ +  ++G+G
Sbjct: 98  NNTTVENGNLVETITEIKQSTGGDIIVYGGATFVSALIKEGLVDELHLFINPSILGKG 155


>gi|303233053|ref|ZP_07319728.1| dCMP deaminase family protein [Atopobium vaginae PB189-T1-4]
 gi|302480828|gb|EFL43913.1| dCMP deaminase family protein [Atopobium vaginae PB189-T1-4]
          Length = 161

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 53/158 (33%), Gaps = 41/158 (25%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
           S+D  FM  A+  ++        +  V   +   +  ++  G     G P          
Sbjct: 10  SWDEFFMRVAMIAAQRSK---DPHTQVGACLADTNDRILSVGY---NGTPSGINDDEFPW 63

Query: 54  ---------------HAEVQALEEAG---EEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                          HAE  AL       ++ + ATAYVTL PC        CA+ +++ 
Sbjct: 64  GTSDDPLYDKHNFVIHAEANALLNYRGTLKDMQNATAYVTLFPCQE------CAKMLVQA 117

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
           GI  V+   +     V     + +  K  +  R  E  
Sbjct: 118 GIGEVIYWQNTYKDTVGAAIARSIFDKCGVSYRQYEDA 155


>gi|259503079|ref|ZP_05745981.1| ComE operon protein 2 [Lactobacillus antri DSM 16041]
 gi|259168945|gb|EEW53440.1| ComE operon protein 2 [Lactobacillus antri DSM 16041]
          Length = 163

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 31/136 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------------Y 49
            +D  FM  A   +      T    SV  ++V+D  +I  G                   
Sbjct: 6   DWDQYFMIQAALLASRS---TCKRLSVGAVLVRDKRIIAGGYNGSVSGDDHCIDEGCYLR 62

Query: 50  GG----CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
            G      HAE+ A+ +    G    GA+ YVT  PC        C + +++ GI+ +  
Sbjct: 63  DGHCVRTIHAEMNAILQCARFGISTDGASLYVTDFPCLQ------CTKSLLQAGIKEINY 116

Query: 103 CVDDPDVRVSGRGLQW 118
             +  +   + + ++ 
Sbjct: 117 IRNYHNDDYAMKLIKL 132


>gi|302559168|ref|ZP_07311510.1| cytosine deaminase [Streptomyces griseoflavus Tu4000]
 gi|302476786|gb|EFL39879.1| cytosine deaminase [Streptomyces griseoflavus Tu4000]
          Length = 152

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 17/148 (11%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEA 63
             +++ AL  +R   G     P  A L   DG ++GRG       G P  HAE  A   A
Sbjct: 10  RAWLATALAEARAG-GDEGGIPIGAALYGADGTLLGRGHNRRVQDGDPSAHAETAAFRAA 68

Query: 64  GEEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           G +    G T   TL PC +      C+  + + GI RVV+     +      G  WL+ 
Sbjct: 69  GRQRSYGGTTMVTTLSPCWY------CSGLVRQFGISRVVIG----EAATFHGGHDWLAA 118

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            G+ +  + + E    +  ++ R+ E  
Sbjct: 119 HGVEIVLLDDPECGAMMRDFVARRPELW 146


>gi|308234244|ref|ZP_07664981.1| CMP/dCMP deaminase zinc-binding protein [Atopobium vaginae DSM
           15829]
          Length = 216

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 15/97 (15%)

Query: 30  SVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEE-----ARGATAYVTLEPCS 80
            +  ++V +  ++         ++    HAE  A+ +A ++           YVTLEPC 
Sbjct: 89  PIGAVVVCNNTILSAAHNLRQHSHNPSDHAEFIAMLQAAKKLDSWHLERCCVYVTLEPCL 148

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
                  CA  ++   I R V    D      G    
Sbjct: 149 M------CAGLMLNARIARCVFGAYDQKAGACGSLYN 179


>gi|33620697|ref|NP_891789.1| dCMP deaminase [Enterobacteria phage RB49]
 gi|33438567|gb|AAL15123.2| dCMP deaminase [Enterobacteria phage RB49]
          Length = 168

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 50/162 (30%), Gaps = 49/162 (30%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------------- 53
           +M  A   ++    ++     V  LI KDG +I  G                        
Sbjct: 6   YMQIAYLIAKNSKCVSWK---VGALIEKDGRIISTGFNGTPAGQVNCSCHAHKSGWLDDD 62

Query: 54  --------------------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE+ A+      G    GA+ + T  PC      P CA+
Sbjct: 63  GKMIPEKRPEHSAWSQKNEIHAELNAILFAARNGVSIEGASMWCTASPC------PDCAK 116

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
            I   GI+ +  C D  D          L +  I V R+ ++
Sbjct: 117 AIANSGIKHLYYC-DTYDRNGGRDWADILDKADITVTRIPKA 157


>gi|312898548|ref|ZP_07757938.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Megasphaera micronuciformis F0359]
 gi|310620467|gb|EFQ04037.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Megasphaera micronuciformis F0359]
          Length = 158

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 49/154 (31%), Gaps = 22/154 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
           + D  +M                   +  +I+     I R      T      HAE+ A+
Sbjct: 2   TQDEFYMGK--AIEEAKKAAAIGEIPIGAVIIYKKKAIARAHNLRETLPSATAHAEILAI 59

Query: 61  EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
           EEA            T YVT EPC      P CA  ++   + R+V    DP    +   
Sbjct: 60  EEACRVLSRWRLTDCTLYVTAEPC------PMCAGAVVNSRLDRIVYGCPDPKGGGTRSL 113

Query: 116 L-----QWLSQKGIIVDRMMESEGKIFLHAYLTR 144
                 + L+ +  +   +   E    L  +  +
Sbjct: 114 YTIVEDERLNHRAQVTAGVRADECADLLKKFFQK 147


>gi|260900533|ref|ZP_05908928.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Vibrio parahaemolyticus AQ4037]
 gi|308107071|gb|EFO44611.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Vibrio parahaemolyticus AQ4037]
          Length = 177

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 69/213 (32%), Gaps = 46/213 (21%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITG-----FISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             + IA S D  I         +        I    V  L  + D +++G  T+      
Sbjct: 3   NIVFIATSLDGYIADKQGKLDWLQSVPNPDNIDTGFV-PLMERIDGLVMGRNTLD----- 56

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
                          ++L           +           V  N    +   +  K   
Sbjct: 57  ---------------VVLSFGCDWPYSKPVF----------VLSNTMTEVPQGYEDK--- 88

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            ++    +LK +L  L  +G   L ++GG     +F+   L+D +++ R  I++G G   
Sbjct: 89  -VFLVKGELKDVLADLNTKGFNELYIDGGVT-IQNFLKEDLIDEMVITRFPILLGGG--- 143

Query: 327 SPLEEGYLEK-NFMCVRRDYFGSDVC-LEYIGK 357
           +PL     +  NF   + +     +    Y+ +
Sbjct: 144 APLFGDLQQPLNFKVTKSEVVLDTLVQTTYVRE 176


>gi|242043476|ref|XP_002459609.1| hypothetical protein SORBIDRAFT_02g007465 [Sorghum bicolor]
 gi|241922986|gb|EER96130.1| hypothetical protein SORBIDRAFT_02g007465 [Sorghum bicolor]
          Length = 175

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 46/146 (31%), Gaps = 23/146 (15%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57
                D +F+  A+  +   V      P    +IV     +               HAEV
Sbjct: 14  SQEERDYKFILKAVDEAYRAVECDGGYP-FGAVIVHGDEEVVSSHNLVRKDTDPSAHAEV 72

Query: 58  QALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+ +A ++           Y + EPC      P C   I    I++VV          +
Sbjct: 73  AAIRQACKKLGKINLSDCEIYTSCEPC------PMCLGLIRLSKIKKVVYGAKSEVAAAA 126

Query: 113 GRG-------LQWLSQKGIIVDRMME 131
           G         +++  + GI +    +
Sbjct: 127 GLNGILPDVFIEYYQKSGIEMVDGCQ 152


>gi|289615498|emb|CBI57739.1| unnamed protein product [Sordaria macrospora]
          Length = 363

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 44/143 (30%), Gaps = 38/143 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D+ FM+ A   +            V C++V+D  VI  G                   
Sbjct: 228 SWDSYFMALA-SLAAQRSNCMKR--RVGCVVVRDKRVISTGYNGTPRGLINCGEGGCGRC 284

Query: 47  TAYGGC---------PHAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
               G           HAE  AL EAG E    GA  Y    PC        C+  I + 
Sbjct: 285 NEGQGSGQGLSTCLCMHAEENALLEAGRERVREGAVLYCDTCPCL------TCSIKIAQV 338

Query: 96  GIRRVVVCVDDPDVRVSGRGLQW 118
           GI  VV          +   L  
Sbjct: 339 GISEVVYSQGYSMDGETAGCLDR 361


>gi|134096850|ref|YP_001102511.1| CMP/dCMP deaminase, zinc-binding [Saccharopolyspora erythraea NRRL
           2338]
 gi|291005105|ref|ZP_06563078.1| CMP/dCMP deaminase, zinc-binding protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133909473|emb|CAL99585.1| CMP/dCMP deaminase, zinc-binding [Saccharopolyspora erythraea NRRL
           2338]
          Length = 155

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 57/155 (36%), Gaps = 24/155 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----CPHAEVQA 59
           + D   + AAL  +      T   P +  ++   DG V+ R             HAE+ A
Sbjct: 6   ARDTELVRAALEVA-PGALSTGDVP-IGAVVAGPDGRVLARDHNRREALHDPTAHAEILA 63

Query: 60  LEEA------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           L  A      G    G T  VT+EPC        CA  ++   + RVV    +P     G
Sbjct: 64  LRAAAGVLGDGWRLEGCTLAVTVEPC------TMCAGALVLARVERVVFGCWEPRTGAVG 117

Query: 114 RGLQ-----WLSQKGIIVDRMMESEGKIFLHAYLT 143
                     L+ +  +V  ++E+E    L A+  
Sbjct: 118 SLWDVVRDRRLNHRPEVVGGVLEAECSALLEAFFH 152


>gi|308177721|ref|YP_003917127.1| RibD domain-containing protein [Arthrobacter arilaitensis Re117]
 gi|307745184|emb|CBT76156.1| RibD domain-containing protein [Arthrobacter arilaitensis Re117]
          Length = 181

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 64/209 (30%), Gaps = 39/209 (18%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTVLADD 204
            +     +  S D  I              T    +           A+++G  T     
Sbjct: 1   MTSFKYYVGASIDGFIADRNGSVQWFKPYATAPAVEEHFQKFFETIGAVVIGGKTYEN-- 58

Query: 205 PELTCRLNGLQEHSPMRIILD-PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
                            I+ D     +     +       PV + T ++ P L  A    
Sbjct: 59  -----------------IVRDVTEGSIP---WVF---GDKPVWVFTHHELPTLPGADLTF 95

Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
               +    RD+ +        G   + V GGA +A +F+ +  +D ++L     V+GEG
Sbjct: 96  IRGEVGFWSRDIAQ------SAGAGDVWVVGGADLAGAFVEAEALDEVLLVTVPEVLGEG 149

Query: 324 GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
              + L    +      +  +  G+D+ L
Sbjct: 150 ---ASLFGRGISTQLAALEIEQLGTDIFL 175


>gi|299136120|ref|ZP_07029304.1| CMP/dCMP deaminase zinc-binding [Acidobacterium sp. MP5ACTX8]
 gi|298602244|gb|EFI58398.1| CMP/dCMP deaminase zinc-binding [Acidobacterium sp. MP5ACTX8]
          Length = 156

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 60/154 (38%), Gaps = 20/154 (12%)

Query: 4   SSFDARFMSA-ALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEV 57
           ++ D   M   A+  +R   GL      +   I + DG ++ RG            H E 
Sbjct: 7   TTPDYAAMLRVAIEEAR--AGLAEGGIPIGAAIFRADGSLVSRGHNRRVQQDDPSIHGET 64

Query: 58  QALEEAG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            A   AG  +  R      TL PC +      C+  + + G + VVV     + R    G
Sbjct: 65  DAFRRAGRQKSYRDLIMVTTLAPCFY------CSGLVRQFGFQTVVVG----ESRTFQGG 114

Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           ++ L ++GI V  +  +E    L  Y++ + E  
Sbjct: 115 IEELREQGINVIDLDSAECVEMLTGYISARPEVW 148


>gi|196014346|ref|XP_002117032.1| hypothetical protein TRIADDRAFT_50979 [Trichoplax adhaerens]
 gi|190580254|gb|EDV20338.1| hypothetical protein TRIADDRAFT_50979 [Trichoplax adhaerens]
          Length = 151

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 17/86 (19%)

Query: 9  RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA- 63
           +M  A   +     L +    V C++V    +IG+G            HAE+ A+EEA 
Sbjct: 10 EWMEIAFELANEA--LVAGEVPVGCVLVFGNKIIGKGRNEVNEVKNATRHAEMVAIEEAY 67

Query: 64 ----GEEARGATAY------VTLEPC 79
                + R + A+      VT+EPC
Sbjct: 68 KWCENNQVRPSVAFSNSQLLVTVEPC 93


>gi|115456425|ref|NP_001051813.1| Os03g0833900 [Oryza sativa Japonica Group]
 gi|40714681|gb|AAR88587.1| putative deoxycytidine deaminase [Oryza sativa Japonica Group]
 gi|108711941|gb|ABF99736.1| Guanine deaminase, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550284|dbj|BAF13727.1| Os03g0833900 [Oryza sativa Japonica Group]
 gi|215707116|dbj|BAG93576.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218194042|gb|EEC76469.1| hypothetical protein OsI_14201 [Oryza sativa Indica Group]
 gi|222626116|gb|EEE60248.1| hypothetical protein OsJ_13255 [Oryza sativa Japonica Group]
          Length = 186

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 16/116 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
           V   D +F+S A+  +   V      P    ++V++  ++               HAEV 
Sbjct: 27  VQDRDHKFLSKAVEEAYQGVDCGHGGP-FGAVVVRNDEIVVSCHNMVLDYTDPTAHAEVT 85

Query: 59  ALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           A+ EA ++           Y + EPC      P C   +    I+R+V        
Sbjct: 86  AIREACKKLGKIELSDCEMYASCEPC------PMCFGAVHLSRIKRLVYGAKAEAA 135


>gi|134057563|emb|CAK48917.1| unnamed protein product [Aspergillus niger]
          Length = 338

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 44/146 (30%), Gaps = 38/146 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-- 53
           ++D  FM  A   +            V C++V+D  VI  G             GGCP  
Sbjct: 192 NWDQYFMELA-SLAAQRSNCMKR--RVGCVLVRDRRVISTGYNGTPRHIRNCNEGGCPRC 248

Query: 54  ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                           HAE  AL EAG E    GA  Y    PC        C   I + 
Sbjct: 249 NRGEGGGVGLSTCLCLHAEENALLEAGRERIREGAILYCDTCPCL------TCTVKITQV 302

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           GI  VV              L  L  
Sbjct: 303 GITEVVYSQGYNMDNDVCSVLPSLCH 328


>gi|225175841|ref|ZP_03729834.1| CMP/dCMP deaminase zinc-binding [Dethiobacter alkaliphilus AHT 1]
 gi|225168765|gb|EEG77566.1| CMP/dCMP deaminase zinc-binding [Dethiobacter alkaliphilus AHT 1]
          Length = 166

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 53/158 (33%), Gaps = 43/158 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+DA FM      +     L      V  LI+KD  ++  G                   
Sbjct: 19  SWDAYFMEITHVVAGRSTCLRRK---VGALIIKDKRILATGYNGAPSGLAHCQDVGCIRE 75

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G   + AT Y T  PC        CA+ II 
Sbjct: 76  QQQVPSGERHELCRALHAEQNAILQAALYGVSIQHATLYCTTHPC------VMCAKMIIN 129

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
            G++ VV+    PD   +      L + G+ V  + E 
Sbjct: 130 AGMKEVVIVKTYPDTMAA----ALLDEAGVTVRYLEEP 163


>gi|289618605|emb|CBI54849.1| unnamed protein product [Sordaria macrospora]
          Length = 681

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 19/134 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL----- 60
           FM  AL  +R  +  T+  P V C++V    VI RG+ A      G  HAE+ A+     
Sbjct: 339 FMREALDMARLAL-KTNETP-VGCVLVYKDRVIARGMNATNVSRNGTRHAELMAICALLS 396

Query: 61  --EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
              +A  E + A      +  S +G   P    +   G +        P  RV    +  
Sbjct: 397 YSGDADLEPKNAQHQCNHDEPSFWGDVDPRDGHLFPYGQKL------HPAPRVDRSVVSE 450

Query: 119 LSQKGIIVDRMMES 132
            +    +   +M +
Sbjct: 451 CTLYVTVEPCVMCA 464


>gi|116070709|ref|ZP_01467978.1| cytidine/deoxycytidylate deaminase family protein [Synechococcus
           sp. BL107]
 gi|116066114|gb|EAU71871.1| cytidine/deoxycytidylate deaminase family protein [Synechococcus
           sp. BL107]
          Length = 157

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 60/164 (36%), Gaps = 21/164 (12%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M  +     +M   L+ +    GL+   P  A ++  DG  IG G     T      HAE
Sbjct: 1   MDQTDRFHEWMKVLLQRA-QVNGLSGEVPVAAVVLGPDGRAIGHGRNRRETEQDPLGHAE 59

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL +A               VTLEPC      P CA  +++  +  VV    D     
Sbjct: 60  LVALRQAALILGDWRFNQCCLIVTLEPC------PMCAGALVQARMGTVVFGAHDRKRGG 113

Query: 112 SGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
            G  +          K  ++  +ME+E    L  +  ++ ++  
Sbjct: 114 LGGTMNLSTHPSAHHKMTVIGGVMEAEASTQLEQWFKQRRQRNR 157


>gi|269986852|gb|EEZ93129.1| dihydrofolate reductase region [Candidatus Parvarchaeum acidiphilum
           ARMAN-4]
          Length = 171

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 10/110 (9%)

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           I+VT++      +  +K+  N+I  D +  K+++ I+  +G +S +V  G A+A SF+  
Sbjct: 67  IVVTKH-----KIKLKKEWKNVIVTDKK-PKEIIRIIEEKGYSSAMV-AGGALATSFLKE 119

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEY 354
            LV+ I L    + +G  GIP    E + EK    ++   F  D V L Y
Sbjct: 120 NLVNEIYLNIEPLALG-KGIPLFSNENF-EKKLKLLQVKRFSKDEVRLHY 167


>gi|299779161|ref|YP_003734355.1| Cd dCMP deaminase [Enterobacteria phage IME08]
 gi|298105890|gb|ADI55534.1| Cd dCMP deaminase [Enterobacteria phage IME08]
          Length = 181

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 41/143 (28%), Gaps = 56/143 (39%)

Query: 31  VACLIVKDGIVIGRGV--------------------------------------TAYGGC 52
           V  +I K+G +I  G                                             
Sbjct: 24  VGAVIEKNGRIISTGYNGSPSGGVNCCDHAVEQDWTRVVYDPARMSHKSVLLKEHRMAHA 83

Query: 53  P-------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE+ A+      G    GAT YVTL PC+       CA+ I + GI+ +V 
Sbjct: 84  AWSSKNEIHAELNAILFAARTGSSIDGATMYVTLSPCAD------CAKSIAQSGIKTLVY 137

Query: 103 CVDDPDVRVSGRGLQWLSQKGII 125
                  R        L + GI 
Sbjct: 138 AELYD--RNPEGWDDILRESGIE 158


>gi|161622500|ref|YP_001595339.1| Cd dCMP deaminase [Enterobacteria phage JS98]
 gi|238695364|ref|YP_002922557.1| Cd dCMP deaminase [Enterobacteria phage JS10]
 gi|160213806|gb|ABX11145.1| Cd dCMP deaminase [Enterobacteria phage JS98]
 gi|220029500|gb|ACL78434.1| Cd dCMP deaminase [Enterobacteria phage JS10]
          Length = 181

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 41/143 (28%), Gaps = 56/143 (39%)

Query: 31  VACLIVKDGIVIGRGV--------------------------------------TAYGGC 52
           V  +I K+G +I  G                                             
Sbjct: 24  VGAVIEKNGRIISTGYNGSPSGGVNCCDHAVEQDWTRVVYDTARMSHKSILLKEHRMAHA 83

Query: 53  P-------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE+ A+      G    GAT YVTL PC+       CA+ I + GI+ +V 
Sbjct: 84  AWSSKNEIHAELNAILFAARTGSSIDGATMYVTLSPCAD------CAKSIAQSGIKTLVY 137

Query: 103 CVDDPDVRVSGRGLQWLSQKGII 125
                  R        L + GI 
Sbjct: 138 AELYD--RNPEGWDDILRESGIE 158


>gi|296118010|ref|ZP_06836592.1| tRNA-specific adenosine deaminase [Corynebacterium ammoniagenes DSM
           20306]
 gi|295968896|gb|EFG82139.1| tRNA-specific adenosine deaminase [Corynebacterium ammoniagenes DSM
           20306]
          Length = 151

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 49/148 (33%), Gaps = 25/148 (16%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----CPHAEVQALEEA-- 63
           M  AL  +       + +  V  +I   DG  +  GV           HAEV+A+  A  
Sbjct: 4   MQRALDVA---ATTPAGDVPVGAVIYGPDGAELATGVNRREALADPTAHAEVEAIRAAVR 60

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                    G    VTLEPC        CA       +  VV    +P     G  +  L
Sbjct: 61  EYGDSWRLEGCELVVTLEPC------AMCAGAAQAARVSSVVFGAWEPKTGACGSLVDVL 114

Query: 120 SQKG-----IIVDRMMESEGKIFLHAYL 142
              G      +   ++E+E +  L  + 
Sbjct: 115 RAPGALFVPEVRAGVLEAECQEVLRKFF 142


>gi|296413803|ref|XP_002836598.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295630426|emb|CAZ80789.1| unnamed protein product [Tuber melanosporum]
          Length = 179

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 17/119 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEE--AG 64
           M +AL+ +   +  ++  P V C+ V    +I  G         G  HAE+ A+++  A 
Sbjct: 1   MQSALQIATSAL-QSNEVP-VGCVFVHGSRIIASGRNDTNRSLCGTRHAELVAIDKILAT 58

Query: 65  EEA---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                 +    YVT+EPC        CA  + + GIR+V     +      G  L+   
Sbjct: 59  HPPSIFKETDLYVTVEPCIM------CASALRQIGIRKVYFGCSNDRFGGCGGVLRVHE 111


>gi|254775495|ref|ZP_05217011.1| hypothetical protein MaviaA2_12621 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 122

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 8/85 (9%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           ++       P+++               +++ +   +  D+ + + +L   G+  +L EG
Sbjct: 1   RLFSDPEQPPILVTCARTAA--RPDLDAQHVLVAGEETVDVARAVAMLREEGMHRILCEG 58

Query: 295 GAAVAHSFINSRLVDSIILYRSQIV 319
           G  +    + +  +  + +  +  +
Sbjct: 59  GPTLLDELVEADALTELCVTLAPKL 83


>gi|86356480|ref|YP_468372.1| cytosine deaminase protein [Rhizobium etli CFN 42]
 gi|86280582|gb|ABC89645.1| cytosine deaminase protein [Rhizobium etli CFN 42]
          Length = 143

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 51/144 (35%), Gaps = 22/144 (15%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA----- 63
            AL  +R   G     P +  ++V DGI + R             HAE+ A+  A     
Sbjct: 1   MALEEAR-AAGERGEVP-IGAVVVIDGIAVSRSGNRTRERNDVTAHAEIAAIRLACEALG 58

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW----- 118
            E   GA  YVTLEPC        C+  I    IRR+    +DP       G+++     
Sbjct: 59  QERLAGADLYVTLEPC------TMCSAAISFARIRRLYYGAEDPKGGAVDNGVRFYAQPT 112

Query: 119 LSQKGIIVDRMMESEGKIFLHAYL 142
                 +     E +    L  + 
Sbjct: 113 CHHAPEVYSGFNEVQSAEILRTFF 136


>gi|89895500|ref|YP_518987.1| hypothetical protein DSY2754 [Desulfitobacterium hafniense Y51]
 gi|219669936|ref|YP_002460371.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Desulfitobacterium hafniense DCB-2]
 gi|89334948|dbj|BAE84543.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219540196|gb|ACL21935.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
           [Desulfitobacterium hafniense DCB-2]
          Length = 240

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 5/115 (4%)

Query: 221 RIILDPHFKLS-LDSKIIKTALLAPVI-IVTENDDPVLALAFRKKNINIIYC--DCRDLK 276
            + +DP  KL   +S++      A V+ ++TE           K  I+ I    D  D  
Sbjct: 92  YVSVDPSGKLGWENSQLTYEDTTAHVLEVLTEKAGNAYKAFLLKLGISYIIAGKDALDYA 151

Query: 277 KLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
             +  L    G+ SL++ GG  +  SFI + + D + +  +    G    P+  E
Sbjct: 152 LAMAKLKSLFGIQSLMLGGGGVLNWSFIQAGMCDELSVLIAAAADGSSETPTLFE 206


>gi|310288270|ref|YP_003939529.1| tRNA-specific adenosine deaminase [Bifidobacterium bifidum S17]
 gi|309252207|gb|ADO53955.1| tRNA-specific adenosine deaminase [Bifidobacterium bifidum S17]
          Length = 150

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 53/155 (34%), Gaps = 24/155 (15%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGC----PHAEV 57
           +   D   M  A+               V  +++ + G VIGRG            HAE+
Sbjct: 1   MGELDEA-MCEAIALGERAGKQGDV--PVGAVVLDERGTVIGRGRNRREAGHDPLAHAEI 57

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           +A+ EA +          T  VTLEPC      P CA   I+  I R+V    D  +   
Sbjct: 58  EAMREAAQARGDWNLADCTLVVTLEPC------PMCAGACIQTRIGRIVFGAWDAKLGAC 111

Query: 113 GRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
           G          +     +V  + E+     L  + 
Sbjct: 112 GSIWDIPRDPHVGHVPQVVGGVREAACARLLTGFF 146


>gi|17555996|ref|NP_499418.1| hypothetical protein Y48A6B.7 [Caenorhabditis elegans]
 gi|3881060|emb|CAA19531.1| C. elegans protein Y48A6B.7, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 168

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 24/121 (19%)

Query: 1   MPVSSFD-------ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA---- 48
           M  S+ D       A  M+ A+  +   V      P    ++V  +G V+ +G       
Sbjct: 1   MSPSASDKPLPPHHAEHMAEAVAEACRGVECGDGGP-FGAVVVDSNGKVVAKGHNMVLVT 59

Query: 49  YGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                HAE+ A++ A +     +  G   Y +  PC      P C    +      +   
Sbjct: 60  KDPTMHAEMTAIKNACKALGTFDLSGHILYTSCYPC------PMCMGGCLWARFDAIYYG 113

Query: 104 V 104
            
Sbjct: 114 A 114


>gi|121715970|ref|XP_001275594.1| cytidine and deoxycytidylate deaminase zinc-binding domain protein
           [Aspergillus clavatus NRRL 1]
 gi|119403751|gb|EAW14168.1| cytidine and deoxycytidylate deaminase zinc-binding domain protein
           [Aspergillus clavatus NRRL 1]
          Length = 217

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 58/168 (34%), Gaps = 38/168 (22%)

Query: 1   MPVSS-FDARFMSAALRFSRWHVGLTSTNPSVACLIV---------KDGIVIGRGVTAY- 49
           M  S  FD  ++   L  +        TN  V  +++         KD  V+  G T   
Sbjct: 1   MTTSPHFD--YLRQCLSLAERSPPR-PTNFRVGAMLLSRRDGDIECKDDCVLSTGYTMEL 57

Query: 50  GGCPHAEVQALEE----------------AGEEARGATAYVTLEPCS-HYGRSPPCAQFI 92
            G  HAE   L                    E  R    YVT+EPC      + PC Q I
Sbjct: 58  AGNTHAEQCCLSNFAAVHSVPEDRVAEVLPAEPGRKLVMYVTMEPCGKRLSGNVPCVQRI 117

Query: 93  IEC------GIRRVVVCVDDPDVRVSGRG-LQWLSQKGIIVDRMMESE 133
           I+       GI++V   V +P   V      + L++ G+    +   E
Sbjct: 118 IDTRAGGRPGIQKVYFGVKEPGTFVGSSEGCKRLTEAGVEWRVVNGLE 165


>gi|163816077|ref|ZP_02207447.1| hypothetical protein COPEUT_02257 [Coprococcus eutactus ATCC 27759]
 gi|158448887|gb|EDP25882.1| hypothetical protein COPEUT_02257 [Coprococcus eutactus ATCC 27759]
          Length = 159

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 51/147 (34%), Gaps = 34/147 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV-------------TAYG 50
           S+D  FM  A+  +         +  V   IV K+  ++  G                  
Sbjct: 8   SWDQYFMGIAMMSAERSK---DPSTQVGACIVDKNNRILSMGYNGMPAGCDDDAMPWGKV 64

Query: 51  GCP---------HAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           G P         HAE+ ++    G   + A  Y TL PC+       CA+ II+CGI+ V
Sbjct: 65  GNPLDNKYFYVCHAELNSILNYRGGNLKDAIIYSTLFPCNE------CAKAIIQCGIKEV 118

Query: 101 VVCVDDPD-VRVSGRGLQWLSQKGIIV 126
           V   D       +    +     G+  
Sbjct: 119 VYMSDKYASTDSTIASKRMFDMAGVKY 145


>gi|222480528|ref|YP_002566765.1| CMP/dCMP deaminase zinc-binding [Halorubrum lacusprofundi ATCC
           49239]
 gi|222453430|gb|ACM57695.1| CMP/dCMP deaminase zinc-binding [Halorubrum lacusprofundi ATCC
           49239]
          Length = 174

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 43/111 (38%), Gaps = 19/111 (17%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQA 59
           +  D +++  A+  +   V +   N     L+V DG ++        T      H E+  
Sbjct: 23  TPSDRKYVDRAIELAEEAVEM--GNTPFGALLVLDGEIVAEAHNETLTEDDLAAHPELAL 80

Query: 60  LEEAG------EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
              AG      E AR  T Y + EPC      P CA  I   GI RVV  V
Sbjct: 81  ARWAGRELDVDERAR-CTMYASTEPC------PMCATGIHYAGIGRVVFGV 124


>gi|33519984|ref|NP_878816.1| putative cytosine/adenosine deaminase [Candidatus Blochmannia
           floridanus]
 gi|33504330|emb|CAD83223.1| cytosine/adenosine deaminase zinc-binding region; hydrolase
           activity [Candidatus Blochmannia floridanus]
          Length = 159

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 17/121 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           +M  A+  +       + + SV  ++V +  +IG G  A         HAE+ AL    E
Sbjct: 10  WMCYAVMLANIADL--NGDVSVGAVLVYNERLIGCGYNASIKNNDPSAHAEIVALRIGAE 67

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                     T YVTLEPC        C   +I   + ++V    +          +++ 
Sbjct: 68  VLGNYRLLNTTLYVTLEPCMM------CIGAMIHARVYKLVYGAHNKKTEYFSIWNKYIR 121

Query: 121 Q 121
            
Sbjct: 122 N 122


>gi|312867602|ref|ZP_07727808.1| putative ComE operon protein 2 [Streptococcus parasanguinis F0405]
 gi|311096665|gb|EFQ54903.1| putative ComE operon protein 2 [Streptococcus parasanguinis F0405]
          Length = 155

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 49/129 (37%), Gaps = 32/129 (24%)

Query: 1   MPVS--SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----- 53
           MP +  ++D  F + AL  S       +    V  ++VKD  VI  G             
Sbjct: 1   MPHNRLAWDEYFAAQALLISNRATCNRAK---VGAVLVKDNKVIATGYNGSVSGTDHCLE 57

Query: 54  --------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                         HAEV A+ +  E    +G TAYVT  PC +      C + +++ G 
Sbjct: 58  DGCLMVEGHCVRTIHAEVNAILQGAERGIPKGFTAYVTHFPCLN------CTKQLLQVGC 111

Query: 98  RRVVVCVDD 106
           +RVV     
Sbjct: 112 KRVVYIHQY 120


>gi|328872297|gb|EGG20664.1| adenosine deaminase [Dictyostelium fasciculatum]
          Length = 307

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 7/59 (11%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAEVQALEE 62
           ++M  A+     ++ L      V C+IV ++G VI RG            HAE++AL+ 
Sbjct: 73  KYMRLAIEQG--YIALNEGEVPVGCVIVHRNGTVIARGFNKTNIKKNATRHAEIEALDS 129


>gi|257898719|ref|ZP_05678372.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium Com15]
 gi|293571938|ref|ZP_06682952.1| ComE operon protein 2 [Enterococcus faecium E980]
 gi|257836631|gb|EEV61705.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium Com15]
 gi|291607956|gb|EFF37264.1| ComE operon protein 2 [Enterococcus faecium E980]
          Length = 179

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 31/137 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            +D  FM+ A+  S            V   +V++  +I  G                   
Sbjct: 26  PWDQYFMAQAVLLSLRSTCTRLE---VGATLVREKRIIAGGYNGAVSGDVHCIDEGCYVV 82

Query: 54  --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE+ AL +    G    G+  YVT  PC        C + +++ G++ +  
Sbjct: 83  DGHCLRTIHAEMNALLQCAKLGIPTEGSEIYVTHFPCL------ACTKALLQAGVKGINY 136

Query: 103 CVDDPDVRVSGRGLQWL 119
             D  +   +   ++ L
Sbjct: 137 LHDYRNDPYAQALIEQL 153


>gi|226357352|ref|YP_002787092.1| dCMP deaminase (Deoxycytidylate deaminase) [Deinococcus deserti
           VCD115]
 gi|226319342|gb|ACO47338.1| putative dCMP deaminase (Deoxycytidylate deaminase) [Deinococcus
           deserti VCD115]
          Length = 142

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 41/120 (34%), Gaps = 27/120 (22%)

Query: 31  VACLIV-KDGIVIGRGVTAYGGCP---------------HAEVQALEEAGEEARGATAYV 74
           V   I+ +   V+G G                       HAEV AL  A     G T YV
Sbjct: 28  VGACILDRHHRVVGVGYNGRAAGEPNERESLDQGHSGFIHAEVNALLAANWNGEGHTLYV 87

Query: 75  TLEPCSHYGRSPPCAQFIIEC-GIRRVVVCVDDPDVRVSGRGL----QWLSQKGIIVDRM 129
           T EPC+       CA+ I+    + RV       +      GL    + L   GI V  +
Sbjct: 88  THEPCA------TCARLIVNSRRVGRVAFASPYSETSRVQSGLPSGAEILRSAGIEVQHV 141


>gi|153838864|ref|ZP_01991531.1| riboflavin biosynthesis protein RibD C- domain protein [Vibrio
           parahaemolyticus AQ3810]
 gi|149747692|gb|EDM58602.1| riboflavin biosynthesis protein RibD C- domain protein [Vibrio
           parahaemolyticus AQ3810]
          Length = 177

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 72/213 (33%), Gaps = 46/213 (21%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITG-----FISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             + IA S D  I         +        I    V  L  + D +++G  T+      
Sbjct: 3   NIIFIATSLDGYIADKQGKLDWLQSVPNPDNIDTGFV-PLMERIDGLVMGRNTLD----- 56

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
                          ++L           +           V  N    +   +  K   
Sbjct: 57  ---------------VVLSFGCDWPYSKPVF----------VLSNTMTEVPQGYEDK--- 88

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            ++    +LK +L  L  +G   L ++GG     +F+   L+D +++ R  I++G G   
Sbjct: 89  -VFLVKGELKNVLADLNTKGFNELYIDGG-MTIQNFLKEDLIDKMVITRFPILLGGG--- 143

Query: 327 SPLEEGYLEK-NFMCVRRD-YFGSDVCLEYIGK 357
           +PL     +  NF  ++ +   G+ V   Y+ +
Sbjct: 144 APLFGDLEQPLNFKVIKSEVVLGTLVQTTYVRE 176


>gi|313905681|ref|ZP_07839042.1| bifunctional deaminase-reductase domain protein [Eubacterium
           cellulosolvens 6]
 gi|313469505|gb|EFR64846.1| bifunctional deaminase-reductase domain protein [Eubacterium
           cellulosolvens 6]
          Length = 229

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 56/146 (38%), Gaps = 14/146 (9%)

Query: 222 IILDPHFKLSLDSKIIKTALLAP--VIIVTENDDPVLALAFRKKNINIIYCDC--RDLKK 277
           II+D    L     +          +II++E+           K I+ I C     DL++
Sbjct: 85  IIVDTKGTL-----LWDDGDTDKPYLIIMSEDVSEKYLDYLNSKKISWITCGKAHIDLRR 139

Query: 278 LLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
              IL     +  + + GG  +  SF++  LVD + L     + G  G+ +  +    ++
Sbjct: 140 ASEILAENFRIERMAIVGGGHINGSFLDEGLVDEVSLLIGPAIDGREGMTAVFDGRRKDR 199

Query: 337 N--FMCVRRDYFGSD--VCLEYIGKN 358
               M ++      D  V L Y  KN
Sbjct: 200 EPIHMLLKDIQKFEDGAVWLRYEVKN 225


>gi|297833236|ref|XP_002884500.1| deoxycytidine deaminase [Arabidopsis lyrata subsp. lyrata]
 gi|297330340|gb|EFH60759.1| deoxycytidine deaminase [Arabidopsis lyrata subsp. lyrata]
          Length = 191

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 16/115 (13%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQA 59
           +  D ++++ A+  +   V      P    +IV    ++               HAE+ A
Sbjct: 37  NERDHKYLTQAVEEAYIGVECGDGRP-FGAVIVHKNEIVVSCHNMVLKYKDPTAHAEIIA 95

Query: 60  LEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           + EA ++           Y + EPC      P C   I    ++R+V        
Sbjct: 96  IREACKKLNEIKLSECELYASCEPC------PMCFGAIHLSRLKRLVYGAKAEAA 144


>gi|193636783|ref|XP_001945167.1| PREDICTED: deoxycytidylate deaminase-like [Acyrthosiphon pisum]
          Length = 220

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 49/146 (33%), Gaps = 35/146 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
           S+D  FM+ A   ++           V   IV  D  ++G G                  
Sbjct: 48  SWDDFFMATAFLVAKRSK---DPVTQVGACIVTPDKKIVGTGYNGMPIGCNDDNFPWGKN 104

Query: 47  ------TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                   Y    HAE+ A L +   + R  T YV L PC+       CA+ II+ GI+ 
Sbjct: 105 NPSKLENKYFYVCHAEMNAVLNKNSMDVRNCTIYVALFPCNE------CAKIIIQSGIKE 158

Query: 100 VVVCVDDP-DVRVSGRGLQWLSQKGI 124
           VV   D            +     G+
Sbjct: 159 VVYLSDKYSFKPEMIASKRMFKASGV 184


>gi|115440135|ref|NP_001044347.1| Os01g0765000 [Oryza sativa Japonica Group]
 gi|57899567|dbj|BAD87146.1| deoxycytidylate deaminase-like [Oryza sativa Japonica Group]
 gi|113533878|dbj|BAF06261.1| Os01g0765000 [Oryza sativa Japonica Group]
 gi|215678846|dbj|BAG95283.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 248

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 66/183 (36%), Gaps = 39/183 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
           S+D  FM+ A   ++        N  V   +V ++GI++G G                  
Sbjct: 75  SWDDYFMAIAFLSAKRSK---DPNRQVGACLVSQEGIILGIGYNGFPRGCSDNKLPWAKK 131

Query: 47  --------TAYGGCPHAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                   T Y    HAEV A+       A G   YVT+ PC+       CA+ II+ G+
Sbjct: 132 SAKGDPLETKYPYVVHAEVNAILNTNHASAAGQKLYVTMFPCNE------CAKIIIQSGV 185

Query: 98  RRVVVCVD---DPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL 154
             V+  V+   D    V     + LS  G+ V +      +I +     R  E   +   
Sbjct: 186 SEVIYFVEKRIDNSDYVYVASHKLLSMAGVKVRKHQPQMSQIPIKFQEPRNGEPSMNAAS 245

Query: 155 KIA 157
             +
Sbjct: 246 IFS 248


>gi|291278901|ref|YP_003495736.1| CMP/dCMP deaminase zinc-binding protein [Deferribacter
           desulfuricans SSM1]
 gi|290753603|dbj|BAI79980.1| CMP/dCMP deaminase, zinc-binding protein [Deferribacter
           desulfuricans SSM1]
          Length = 149

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 37/108 (34%), Gaps = 36/108 (33%)

Query: 31  VACLIVKDGIVIGRGV---------------------------TAYGGCPHAEVQALEEA 63
           V  +IVKD  ++  G                                   HAE  A+ +A
Sbjct: 27  VGAVIVKDRQILATGYNGVPRGITHCSETGCLRQKLNVPSGQRHELCRGLHAEQNAIIQA 86

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
              G   +GAT Y   +PCS       C + II  GI+R+V      D
Sbjct: 87  AYHGVSIKGATIYTNAKPCSI------CTKMIINAGIKRIVFEEYYND 128


>gi|32490887|ref|NP_871141.1| hypothetical protein WGLp138 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166093|dbj|BAC24284.1| yfhC [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 151

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 17/107 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE- 65
           M  AL  +          P  + +I+KD  +IG G            HAE+ AL  AG+ 
Sbjct: 1   MYHALYLANKAKKF-GEIPIGSVVILKDN-IIGEGWNQSIKKNDPSAHAEILALRSAGKN 58

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                      Y T+EPC        C   II   + R++       
Sbjct: 59  INNYRLLNTEIYTTIEPCIM------CIGAIINARVSRLIFGARKTK 99


>gi|21223347|ref|NP_629126.1| deaminase [Streptomyces coelicolor A3(2)]
 gi|256785550|ref|ZP_05523981.1| deaminase [Streptomyces lividans TK24]
 gi|289769446|ref|ZP_06528824.1| deaminase [Streptomyces lividans TK24]
 gi|20520975|emb|CAD30959.1| putative deaminase [Streptomyces coelicolor A3(2)]
 gi|289699645|gb|EFD67074.1| deaminase [Streptomyces lividans TK24]
          Length = 167

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 42/122 (34%), Gaps = 25/122 (20%)

Query: 5   SFDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
            F+  +M  A+  +    R   G          LI K G ++  G            HAE
Sbjct: 12  EFERAWMDKAIELATTSVRNGGG------PFGALIAKGGEIVALGNNQVTAGLDPTAHAE 65

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           V A+  A +        G T   + EPC      P C    +   + R+V   D  D  V
Sbjct: 66  VSAIRAACKALDTFSLEGCTLVTSCEPC------PMCLSSALWARVDRLVFSADRHDAAV 119

Query: 112 SG 113
           +G
Sbjct: 120 AG 121


>gi|146296225|ref|YP_001179996.1| CMP/dCMP deaminase, zinc-binding [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409801|gb|ABP66805.1| CMP/dCMP deaminase, zinc-binding protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 151

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 53/159 (33%), Gaps = 43/159 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           ++D  FM   +   +     T     V  LIVKD  ++  G                   
Sbjct: 4   TWDEYFMQI-VDIVKER--STCLRRKVGALIVKDKRILATGYNGAPSNLPHCEEVGCLRE 60

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G    G+  Y T  PC        CA+ I+ 
Sbjct: 61  KLNVPSGQRHELCRGLHAEQNAIIQAAKMGVNIDGSVIYTTTYPCVI------CAKMIVN 114

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
            GI++V+     PD        +   + GI V +  E+E
Sbjct: 115 AGIKKVIYKGSYPDEMSQ----KIFEEAGIEVVKFEENE 149


>gi|157691278|ref|YP_001485740.1| dihydrofolate reductase family protein [Bacillus pumilus SAFR-032]
 gi|157680036|gb|ABV61180.1| possible dihydrofolate reductase family protein [Bacillus pumilus
           SAFR-032]
          Length = 180

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP--SPLE 330
            D+   +  L       + + GG  +  SFI + LVD + L    ++IG  GIP  SP++
Sbjct: 94  EDILSFVRKLKNETGQHIWIVGGGELLQSFIKAGLVDELYLQIVPVMIGR-GIPLFSPVD 152

Query: 331 EGYLEKNFMCVRRDYF 346
              +E  F       +
Sbjct: 153 ---MEAKFSLKEVRQY 165


>gi|37651679|ref|NP_932553.1| Cd [Aeromonas phage 44RR2.8t]
 gi|66392000|ref|YP_238925.1| cd dCMP deaminase [Aeromonas phage 31]
 gi|34732979|gb|AAQ81516.1| dCMP deaminase [Aeromonas phage 44RR2.8t]
 gi|62114837|gb|AAX63685.1| cd dCMP deaminase [Aeromonas phage 31]
          Length = 172

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 48/139 (34%), Gaps = 49/139 (35%)

Query: 31  VACLIVKDGIVIGRGV-------------TAYGGCP------------------------ 53
           V  +I KDG +I  G               A                             
Sbjct: 24  VGAIITKDGRIISTGYNGTPAGGHENCDDHAKAAGWLDPETGKLKAMYRQAHNEWSSCNE 83

Query: 54  -HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
            HAE+ A+    ++G+   GA  YVT+ PC        CA+ I + GI++V    ++   
Sbjct: 84  IHAELNAILYAAKSGQSIDGAEMYVTVSPCRE------CAKAIAQSGIKKVFY--NELYD 135

Query: 110 RVSGRGLQWLSQKGIIVDR 128
           R +    + L + GI V  
Sbjct: 136 RNTPGWDEILVKSGIKVIH 154


>gi|304390572|ref|ZP_07372525.1| cytidine/deoxycytidylate deaminase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326328|gb|EFL93573.1| cytidine/deoxycytidylate deaminase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 180

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 50/129 (38%), Gaps = 17/129 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-----GGCPHAEV 57
           +SS + R +  A R ++   G     P  A ++  +GIV G G+            HAE+
Sbjct: 29  LSSAEVRALDTAYRLAQKA-GRAGDIPVGAVVLTPEGIVAGLGLNQRENPPYDPSAHAEI 87

Query: 58  QALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL EA         +G T   TLEPC        CA  I+   I R++    DP     
Sbjct: 88  VALREAAGRLERWNLKGCTLVATLEPC------TMCAGAIVNARISRLIFGAWDPKAGAC 141

Query: 113 GRGLQWLSQ 121
           G     +  
Sbjct: 142 GSIRDVVRD 150


>gi|294787884|ref|ZP_06753128.1| tRNA-specific adenosine deaminase [Simonsiella muelleri ATCC 29453]
 gi|294484177|gb|EFG31860.1| tRNA-specific adenosine deaminase [Simonsiella muelleri ATCC 29453]
          Length = 240

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 22/129 (17%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGCP-----HAEVQALEEAGEEARG-----ATAYVTLEPC 79
            V  +++  G +I +              HAE+Q +E+AG+  +         YVTLEPC
Sbjct: 115 PVGAILLHQGKIIAQ-AHNLCVAGHSVCQHAEIQVIEQAGKILQNYRLDECDLYVTLEPC 173

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEG 134
           +       CA  I++  IRR++    +P +  +G  L       L+    +   ++  E 
Sbjct: 174 AM------CAGAIVQARIRRLIFAAPEPKMGAAGSVLNIFANKRLNSHTAVKSGILADES 227

Query: 135 KIFLHAYLT 143
           K  L  +  
Sbjct: 228 KAILQQFFQ 236


>gi|261252000|ref|ZP_05944574.1| dihydrofolate reductase [Vibrio orientalis CIP 102891]
 gi|260938873|gb|EEX94861.1| dihydrofolate reductase [Vibrio orientalis CIP 102891]
          Length = 88

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL-EEG 332
           +LK+++  L  +G   L ++GG     SF+   L+D + +    +++G G   SPL  E 
Sbjct: 5   ELKEIVQNLNEQGYNDLYIDGG-KTIQSFLKEGLIDEMSITTMPVLLGGG---SPLFGEL 60

Query: 333 YLEKNFMCVRRDY 345
            + ++F  V    
Sbjct: 61  DMMQSFKLVESQI 73


>gi|226303819|ref|YP_002763777.1| tRNA-specific adenosine deaminase [Rhodococcus erythropolis PR4]
 gi|226182934|dbj|BAH31038.1| putative tRNA-specific adenosine deaminase [Rhodococcus
           erythropolis PR4]
          Length = 153

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 58/154 (37%), Gaps = 25/154 (16%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQA 59
           + D R + AA+  +R     +  +  V  ++   DG+ + R   A         HAE+ A
Sbjct: 4   ADDQRMIRAAIVAARSA---SDADVPVGAVVFDADGVEVARAANAREAASDPTAHAEILA 60

Query: 60  LEEA------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           L  A      G    GAT  VTLEPC        CA  ++   + RVV    +P     G
Sbjct: 61  LRAAAKIYGDGWRLEGATLAVTLEPC------TMCAGALVLARVSRVVFGAWEPKTGAVG 114

Query: 114 RGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
                +  K +     +   ++E E    L  + 
Sbjct: 115 SLWDVVRDKRLTYRPQVRGGVLEDECAGLLEDFF 148


>gi|315657779|ref|ZP_07910659.1| cytidine/deoxycytidylate deaminase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315491576|gb|EFU81187.1| cytidine/deoxycytidylate deaminase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 180

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 50/129 (38%), Gaps = 17/129 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-----GGCPHAEV 57
           +SS + R +  A R ++   G     P  A ++  +GIV G G+            HAE+
Sbjct: 29  LSSAEVRALDTAYRLAQKA-GRAGDIPVGAVVLTPEGIVAGLGLNQRENPPYDPSAHAEI 87

Query: 58  QALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL EA         +G T   TLEPC        CA  I+   I R++    DP     
Sbjct: 88  VALREAAGRLERWNLKGCTLVATLEPC------TMCAGAIVNARISRLIFGAWDPKAGAC 141

Query: 113 GRGLQWLSQ 121
           G     +  
Sbjct: 142 GSIRDVVRD 150


>gi|303239763|ref|ZP_07326287.1| CMP/dCMP deaminase zinc-binding [Acetivibrio cellulolyticus CD2]
 gi|302592700|gb|EFL62424.1| CMP/dCMP deaminase zinc-binding [Acetivibrio cellulolyticus CD2]
          Length = 148

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 51/150 (34%), Gaps = 43/150 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D  FM   +   +     T     V  LI KD  ++  G                   
Sbjct: 4   SWDQYFMEI-VDLIKSR--STCKRRQVGALIAKDKRILATGYNGAPMGCKHCDEIGCLRE 60

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G   +  T YVT +PC        CA+  I 
Sbjct: 61  KMNVPSGERHELCRAIHAEQNAIVQAAYSGTSVKDGTLYVTNQPC------VLCAKMAIN 114

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            GI+++V   + PD       L+ L + GI
Sbjct: 115 AGIKKIVFKGEYPD----NLALELLKEAGI 140


>gi|296876705|ref|ZP_06900753.1| deoxycytidylate deaminase [Streptococcus parasanguinis ATCC 15912]
 gi|296432207|gb|EFH18006.1| deoxycytidylate deaminase [Streptococcus parasanguinis ATCC 15912]
          Length = 160

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 53/150 (35%), Gaps = 33/150 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           ++D  F + AL  S       +    V  ++VKD  VI  G                   
Sbjct: 12  AWDEYFAAQALLISNRATCNRAK---VGAVLVKDNKVIATGYNGSVSGTDHCLEDGCLMV 68

Query: 54  --------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                   HAEV A+ +  E    +G TAYVT  PC +      C + +++ G +RVV  
Sbjct: 69  EGHCVRTIHAEVNAILQGAERGIPKGFTAYVTHFPCLN------CTKQLLQVGCKRVVYI 122

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
                   +        +K + +  +   E
Sbjct: 123 HQYRIDEYAE---YLYREKEVELMHLPIEE 149


>gi|294142299|ref|YP_003558277.1| deoxycytidylate deaminase [Shewanella violacea DSS12]
 gi|293328768|dbj|BAJ03499.1| deoxycytidylate deaminase, putative [Shewanella violacea DSS12]
          Length = 148

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 49/152 (32%), Gaps = 31/152 (20%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----------- 51
           ++ +  RF+  A   + W       +  V  +I +D  ++  G   Y             
Sbjct: 1   MTKWATRFLQMAELVASWSK---DPSTQVGAVITEDNRIVSLGFNGYPHGISDSAETDNR 57

Query: 52  ------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                   HAE  A+  A  +  G   +VT  PC      P CA  II+ G+  V     
Sbjct: 58  EMKLLKTLHAEENAILYAKRDLSGCEIWVTHFPC------PNCAAKIIQTGLSTVHSPEP 111

Query: 106 DPDVRVS-----GRGLQWLSQKGIIVDRMMES 132
             D               L Q G+ VD M   
Sbjct: 112 SKDFLSRWGDKIKISQDMLDQAGVKVDWMQPE 143


>gi|134098685|ref|YP_001104346.1| cytosine deaminase [Saccharopolyspora erythraea NRRL 2338]
 gi|291003628|ref|ZP_06561601.1| cytosine deaminase [Saccharopolyspora erythraea NRRL 2338]
 gi|133911308|emb|CAM01421.1| cytosine deaminase [Saccharopolyspora erythraea NRRL 2338]
          Length = 156

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 17/128 (13%)

Query: 30  SVACLIV-KDGIVIGRGVTAY--GGCP--HAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
            +   +V +DG V+GRG       G P  H E  A   AG +    G T   TL PC + 
Sbjct: 31  PIGAALVGRDGEVLGRGHNRRVQDGDPSVHGETSAFRAAGRQRSYAGTTMVTTLSPCWY- 89

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
                C+  + + GI RVV+     + R    G  WL++ G+ V  + +      +  ++
Sbjct: 90  -----CSGLVRQFGISRVVIG----EARNFHGGHDWLAEHGVEVVLLDDPGCVEMMADFI 140

Query: 143 TRQVEKRS 150
                   
Sbjct: 141 AANPRLWH 148


>gi|291521321|emb|CBK79614.1| Deoxycytidylate deaminase [Coprococcus catus GD/7]
          Length = 161

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 52/145 (35%), Gaps = 34/145 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
           S+D  FM  A + +   +     N  V   IV  D  ++  G                  
Sbjct: 10  SWDEYFMGVA-KLA--GLRSKDPNSQVGSCIVSPDNKILSIGYNGFPRGCSDDVFPWSRE 66

Query: 47  -----TAYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                T Y    H+E+ A+    G    G+  YV+L PC+       C++ II+ GIR +
Sbjct: 67  GDELDTKYFYVTHSELNAILNYRGGSLEGSKIYVSLFPCNE------CSKAIIQSGIREI 120

Query: 101 VVCVDDP-DVRVSGRGLQWLSQKGI 124
           +   D   D        + L   G+
Sbjct: 121 IYDSDKYGDTPAVIASRKMLDAAGV 145


>gi|302535698|ref|ZP_07288040.1| cytidine/deoxycytidine deaminase [Streptomyces sp. C]
 gi|302444593|gb|EFL16409.1| cytidine/deoxycytidine deaminase [Streptomyces sp. C]
          Length = 163

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 23/147 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY--GGCP--HAEVQALEEAGE 65
           M  AL  +   V   + +  V  +++   G ++  G       G P  HAE+ AL  A  
Sbjct: 22  MRLALEEAALAVP--AGDVPVGAVVLGPGGELLSTGHNEREAAGDPTAHAELLALRRAAA 79

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-- 118
                   G T  VTLEPC        CA  +++  + RVV    D     +G       
Sbjct: 80  RLGEWRLTGCTLVVTLEPC------VMCAGALVQSRVARVVYGAGDEKAGAAGSLWDLVR 133

Query: 119 ---LSQKGIIVDRMMESEGKIFLHAYL 142
              L+ +  ++  ++E E    L  + 
Sbjct: 134 DRRLNHRPEVIRGVLEQECARQLTDFF 160


>gi|229816552|ref|ZP_04446851.1| hypothetical protein COLINT_03609 [Collinsella intestinalis DSM
           13280]
 gi|229807887|gb|EEP43690.1| hypothetical protein COLINT_03609 [Collinsella intestinalis DSM
           13280]
          Length = 632

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 51/160 (31%), Gaps = 22/160 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
             D RFM      +            +  ++V  G +I R             HAE  A+
Sbjct: 15  EDDERFMRE--ALAEARAAAEVGEVPIGAVVVHKGTIIARAHNRRELDEDPSAHAEFLAM 72

Query: 61  EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A          G T YVTLEPC        C+  ++   I R V    DP     G  
Sbjct: 73  MQAARTLGRWRLSGCTVYVTLEPCLM------CSGLMVNARIDRCVYGATDPKGGALGTL 126

Query: 116 LQ-----WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
                   L+    +V  ++E E    L ++  R      
Sbjct: 127 YDVSADPRLNHAFPVVSGILEDECAAELRSFFRRLRGAHR 166


>gi|167626885|ref|YP_001677385.1| zinc-binding protein [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|167596886|gb|ABZ86884.1| zinc-binding protein [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 142

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 50/146 (34%), Gaps = 23/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEE 66
           M  A   +          P +  ++VKD  ++ +             HAE+  L +A +E
Sbjct: 1   MQKAYEQALLA-YKAGEVP-IGAVLVKDNQIVAQDFNKTIMLNDPTAHAEILVLRQAAKE 58

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                      YVTLEPC        C   +I+  +  +V   DD  V +  R  +    
Sbjct: 59  LENYRLVNTKLYVTLEPCIM------CLGGLIQARVSELVYACDDTRVGIFSRE-KLHQS 111

Query: 122 KGI-----IVDRMMESEGKIFLHAYL 142
           K I     +   +M  E    L  + 
Sbjct: 112 KSINHNLKVTSGVMIEECSKLLRDFF 137


>gi|152966037|ref|YP_001361821.1| CMP/dCMP deaminase zinc-binding [Kineococcus radiotolerans
           SRS30216]
 gi|151360554|gb|ABS03557.1| CMP/dCMP deaminase zinc-binding [Kineococcus radiotolerans
           SRS30216]
          Length = 161

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 40/110 (36%), Gaps = 17/110 (15%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
            F+  A+  +  +V           ++V+ G ++  G            HAEVQA+ EA 
Sbjct: 11  HFLERAVELATKNVAEGGG--PFGAVLVRGGELLAAGQNRVTRDNDPTAHAEVQAIREAC 68

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
                    G T Y + EPC      P C    +   + RVV   D  D 
Sbjct: 69  RLTGTFSLHGTTLYSSCEPC------PMCLASSLWARVDRVVYAADRDDA 112


>gi|148242060|ref|YP_001227217.1| putative cytosine deaminase [Synechococcus sp. RCC307]
 gi|147850370|emb|CAK27864.1| Putative cytosine deaminase [Synechococcus sp. RCC307]
          Length = 149

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 51/149 (34%), Gaps = 19/149 (12%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY--GGCP--HAEVQALEE 62
            + M  A   +   +G       +  ++  + G V+ RG       G P  H E Q +  
Sbjct: 7   QQLMDQARAEAE--LGWAEGGIPIGAVLATESGEVVARGHNQRVQNGDPTSHGETQCIRN 64

Query: 63  AGEEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           AG        T   TL PC      P CA   +  G RRV++               WL 
Sbjct: 65  AGRRRDWHQLTLVTTLSPC------PMCAGTAVLLGFRRVLIGERRSFAGQES----WLV 114

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
             GI VD + +S     +   L  + +  
Sbjct: 115 DAGIEVDCLDDSGCMALMERMLQHKPDLW 143


>gi|262341266|ref|YP_003284121.1| dCMP deaminase [Blattabacterium sp. (Blattella germanica) str. Bge]
 gi|262272603|gb|ACY40511.1| dCMP deaminase [Blattabacterium sp. (Blattella germanica) str. Bge]
          Length = 155

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 42/122 (34%), Gaps = 28/122 (22%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-----------AYGGCP- 53
            D  +M  A+  S+           V  +IV+   +I  G                G   
Sbjct: 10  DDIAYMKLAIEQSKLSFCKKKK---VGAVIVQKNQIISCGYNRTPSGFDNICEEKNGVTK 66

Query: 54  ----HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               HAE  A+ +   +    +GA+ YVT  PC        C + I +  IRRV+   + 
Sbjct: 67  WYVIHAEENAILKLSSSSLSCKGASIYVTHFPCQE------CCKLIYQSTIRRVIYLHEY 120

Query: 107 PD 108
             
Sbjct: 121 TK 122


>gi|291087360|ref|ZP_06346224.2| riboflavin biosynthesis protein RibD protein [Clostridium sp.
           M62/1]
 gi|291075486|gb|EFE12850.1| riboflavin biosynthesis protein RibD protein [Clostridium sp.
           M62/1]
          Length = 245

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 74/206 (35%), Gaps = 25/206 (12%)

Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR--AQSDAILVGI 197
            ++ +   +R  +   +  S D  I  A  G+       +      LR      A L G 
Sbjct: 1   MFMEKNKMERPFVVCHMLASLDGKIDGAFFGA--PEAAPALKAYGELRGFYSCQATLYGT 58

Query: 198 GTVLA--DDPELTCRLNGLQEHSP-------------MRIILDPHFKLSLDSK-IIKTAL 241
            T+L    D  +     G    SP               + +DP  +L+  S  I K   
Sbjct: 59  TTMLGGYVDGRVGALSVGDTLPSPKDWVNPAGKVLGNFIVSVDPVGELAFSSSTIEKKGR 118

Query: 242 LAPVII--VTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGR-GVTSLLVEGGA 296
            A  +I  +TE   P      +K+ ++ ++   D  D   LL  L     +  L+V GG 
Sbjct: 119 PATHVIEALTEQASPAYLAYLQKQGVSYVFAGKDRLDCPLLLQKLRNLFDIEKLMVAGGG 178

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGE 322
            +  SF +  ++D + L  + +  G 
Sbjct: 179 IINWSFASEGIIDELSLVIAPVADGG 204


>gi|332523517|ref|ZP_08399769.1| putative ComE operon protein 2 [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314781|gb|EGJ27766.1| putative ComE operon protein 2 [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 152

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 52/148 (35%), Gaps = 36/148 (24%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY---------GG-------- 51
            FM+ A   S+     T     V  ++VKD  +I  G              G        
Sbjct: 10  YFMANAELISKRS---TCDRAFVGAVLVKDNRIIATGYNGGVSATDNCNEAGHYMEDGHC 66

Query: 52  --CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV-CVD 105
               HAE+ AL +    G    G   YVT  PC +      C + +++ GI+++      
Sbjct: 67  IRTVHAEMNALIQCAKEGISTDGTELYVTHFPCIN------CTKALLQAGIKKITYKAHY 120

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESE 133
            P        ++ + +KG+   +    E
Sbjct: 121 RPHPFA----IELMEKKGVAYVQHDVPE 144


>gi|325283968|ref|YP_004256509.1| CMP/dCMP deaminase zinc-binding protein [Deinococcus proteolyticus
           MRP]
 gi|324315777|gb|ADY26892.1| CMP/dCMP deaminase zinc-binding protein [Deinococcus proteolyticus
           MRP]
          Length = 142

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 48/150 (32%), Gaps = 30/150 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP------ 53
           M   SFD   M  A R   W          V   I+     V+G G              
Sbjct: 1   MTRPSFDQLGMETA-RL--WATRSADPKVKVGACILDHHHRVVGVGYNGRAAGEPNERES 57

Query: 54  ---------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC-GIRRVVVC 103
                    HAEV AL  A     G T YVT EPC+       CA+ I+    I RV+  
Sbjct: 58  LAQGASGFIHAEVNALLAANWNGEGHTLYVTHEPCA------TCARLIVNSRRISRVLFA 111

Query: 104 VDDPDV----RVSGRGLQWLSQKGIIVDRM 129
            +  +          G   L   GI V  +
Sbjct: 112 QNYAEEVRVGAGLPSGAGILEAAGIEVQHV 141


>gi|189346358|ref|YP_001942887.1| CMP/dCMP deaminase zinc-binding [Chlorobium limicola DSM 245]
 gi|189340505|gb|ACD89908.1| CMP/dCMP deaminase zinc-binding [Chlorobium limicola DSM 245]
          Length = 174

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 51/158 (32%), Gaps = 44/158 (27%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP------------- 53
             FMS A   SR     T  +  +  +IV+D  ++  G      G P             
Sbjct: 30  EYFMSVAHLISRRA-TCTRGH--IGAVIVRDHNILSTGYNGAPSGLPHCNETNCRIYRST 86

Query: 54  --------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                         HAE+ A+ +A   G   + A  Y+T  PC H      C + +I  G
Sbjct: 87  HPDGTIEENCVNTIHAEINAIAQAAKHGVSIKDADIYITASPCIH------CLKVLINVG 140

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
           I+ +                + L   G+ +  +   E 
Sbjct: 141 IKTIYY----DKPYKIEHIDELLRLSGVRLVNVHVEEC 174


>gi|330506583|ref|YP_004383011.1| cytosine deaminase [Methanosaeta concilii GP-6]
 gi|328927391|gb|AEB67193.1| cytosine deaminase [Methanosaeta concilii GP-6]
          Length = 154

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 62/157 (39%), Gaps = 18/157 (11%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPHAEVQALEEA-- 63
           FM AAL  +R   G       +  ++V++    G    R V       HAE+  L  A  
Sbjct: 4   FMQAALDEARK--GSREGGIPIGAVLVEEGRIIGRGRNRRVQQRDQMMHAEIDCLRNARL 61

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
                 A  Y TL PC        CA  ++  GI++VVV     + R +     ++   G
Sbjct: 62  TGGYHNAVLYTTLMPCYM------CAGAVVYFGIKKVVVG----EARSAPAARDFMQAHG 111

Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
           I V  +  +E ++ +  Y++   ++   +  ++    
Sbjct: 112 IEVVDLDWAECRMLMEEYISMNRKQWDEVLSELNPDL 148


>gi|189192458|ref|XP_001932568.1| dCMP deaminase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187974174|gb|EDU41673.1| dCMP deaminase [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 380

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 42/128 (32%), Gaps = 42/128 (32%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPS---VACLIVKDGIVIGRGVTA---------YGGC 52
            +D  FM  A       +     N     V  +IV+D  +I  G             GGC
Sbjct: 200 DWDQYFMMIA------GLAAMRCNCMKRRVGAVIVRDRRIISTGYNGTSRRNTNCNQGGC 253

Query: 53  P----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                            HAE  AL EAG E    GAT Y    PC        CA  I +
Sbjct: 254 ARCNSGTSGSLSACICLHAEENALLEAGRERIGEGATLYCNTCPCL------TCATKITQ 307

Query: 95  CGIRRVVV 102
            GI  VV 
Sbjct: 308 VGITEVVY 315


>gi|28901155|ref|NP_800810.1| hypothetical protein VPA1300 [Vibrio parahaemolyticus RIMD 2210633]
 gi|260362715|ref|ZP_05775584.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Vibrio parahaemolyticus K5030]
 gi|260880002|ref|ZP_05892357.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Vibrio parahaemolyticus AN-5034]
 gi|260894677|ref|ZP_05903173.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Vibrio parahaemolyticus Peru-466]
 gi|28809668|dbj|BAC62643.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308086425|gb|EFO36120.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Vibrio parahaemolyticus Peru-466]
 gi|308091889|gb|EFO41584.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Vibrio parahaemolyticus AN-5034]
 gi|308112444|gb|EFO49984.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Vibrio parahaemolyticus K5030]
          Length = 177

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 68/213 (31%), Gaps = 46/213 (21%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITG-----FISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             + IA S D  I         +        I    V  L  + D +++G  T       
Sbjct: 3   NIVFIATSLDGYIADKQGKLDWLQSVPNPDNIDTGFV-PLMERIDGLVMGRNTFD----- 56

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
                          ++L           +           V  N    +   +  K   
Sbjct: 57  ---------------VVLSFGCNWPYSKPVF----------VLSNTMTEVPQGYEDK--- 88

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            ++    +LK +L  L  +G   L ++GG     +F+   L+D +++ R  I++G G   
Sbjct: 89  -VFLVKGELKDVLADLNTKGFNELYIDGGVT-IQNFLKEDLIDEMVITRFPILLGGG--- 143

Query: 327 SPLEEGYLEK-NFMCVRRDYFGSDVC-LEYIGK 357
           +PL     +  NF   + D     +    Y+ +
Sbjct: 144 APLFGDLEQPLNFKATKSDVVLDTLVQTTYVRE 176


>gi|299134252|ref|ZP_07027445.1| CMP/dCMP deaminase zinc-binding [Afipia sp. 1NLS2]
 gi|298590999|gb|EFI51201.1| CMP/dCMP deaminase zinc-binding [Afipia sp. 1NLS2]
          Length = 154

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 18/112 (16%)

Query: 7   DAR-FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
           DA+ F+  A+  +R +V           ++VKDG VI  GV           HAE+QA+ 
Sbjct: 3   DAKGFLCEAIELARENVRKGGR--PFGAVLVKDGKVIATGVNEILETGDPTTHAELQAIR 60

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            A          G T Y +  PC      P C   +   GIR       + +
Sbjct: 61  VASHVLGSPRLDGCTIYASGHPC------PMCLSAMHLTGIREFAYAYSNEE 106


>gi|163961159|gb|ABY50083.1| cytosine deaminase [Candida tropicalis]
          Length = 120

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 18/124 (14%)

Query: 34  LIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEA----RGATAYVTLEPCSHYGRS 85
           +I  DG V+G+G            H E+ ALE+AG       +  T Y TL PC+     
Sbjct: 1   IISSDGKVLGKGHNERIQKGSAILHGEMSALEDAGRLPGKAYKDCTIYTTLSPCNM---- 56

Query: 86  PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQ 145
             C   I+  GI+RVV+  +             L   G+ V  + +++ K  +  ++  +
Sbjct: 57  --CTGAILLYGIKRVVMGENVNFQGAE----DLLRANGVEVINLDDNDCKEIMSKFIKER 110

Query: 146 VEKR 149
               
Sbjct: 111 PTDW 114


>gi|297627118|ref|YP_003688881.1| CMP/dCMP deaminase, zinc-binding [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922883|emb|CBL57463.1| CMP/dCMP deaminase, zinc-binding [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 159

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 21/128 (16%)

Query: 30  SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
            V  +++  +G+++G G            HAEV A+  A            T  VTLEPC
Sbjct: 34  PVGAVVLDGNGVLLGEGGNRREQDGDATAHAEVLAIRAACARRGAWRLDDCTLVVTLEPC 93

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEG 134
                   CA  ++   IRR+V    DP                L+ +  +V  +M  + 
Sbjct: 94  ------TMCAGALVNARIRRLVFGAFDPKAGAIASLWDVVRDPRLNHRVEVVGGIMADDC 147

Query: 135 KIFLHAYL 142
           +  L  + 
Sbjct: 148 QRVLTDFF 155


>gi|224283917|ref|ZP_03647239.1| Cytosine/adenosine deaminase [Bifidobacterium bifidum NCIMB 41171]
 gi|313141068|ref|ZP_07803261.1| cytosine/adenosine deaminase [Bifidobacterium bifidum NCIMB 41171]
 gi|313133578|gb|EFR51195.1| cytosine/adenosine deaminase [Bifidobacterium bifidum NCIMB 41171]
          Length = 150

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 53/155 (34%), Gaps = 24/155 (15%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGC----PHAEV 57
           +   D   M  A+               V  +++ + G VIGRG            HAE+
Sbjct: 1   MGELDEA-MCEAIALGERAGKQGDV--PVGAVVLDERGTVIGRGRNRREAGHDPLAHAEI 57

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           +A+ EA +          T  VTLEPC      P CA   I+  I R+V    D  +   
Sbjct: 58  EAMREAAQARGDWNLADCTLVVTLEPC------PMCAGACIQTHIGRIVFGAWDAKLGAC 111

Query: 113 GRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
           G          +     +V  + E+     L  + 
Sbjct: 112 GSIWDIPRDPHVGHVPQVVGGVREAACARLLTGFF 146


>gi|42518285|ref|NP_964215.1| ComE operon protein 2. [Lactobacillus johnsonii NCC 533]
 gi|227888945|ref|ZP_04006750.1| competence protein ComEB [Lactobacillus johnsonii ATCC 33200]
 gi|41582569|gb|AAS08181.1| ComE operon protein 2 [Lactobacillus johnsonii NCC 533]
 gi|227850533|gb|EEJ60619.1| competence protein ComEB [Lactobacillus johnsonii ATCC 33200]
 gi|329666595|gb|AEB92543.1| dCMP deaminase [Lactobacillus johnsonii DPC 6026]
          Length = 162

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 34/150 (22%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------------- 53
             FM  AL  ++     T     V  ++VKD  +I  G      G P             
Sbjct: 10  QYFMMQALVIAQRS---TCDRALVGSVLVKDDRMIATGYNGSVSGQPHCDDVGHLMVDGH 66

Query: 54  -----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                H+E+ AL +    G    G   YVT  PC +  +       +++ GI+++    D
Sbjct: 67  CVRTIHSEMNALIQCAKNGISTEGTEIYVTYFPCFNCSKC------LVQAGIKKINYYYD 120

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135
             D  ++   L+ L +KG+ ++++      
Sbjct: 121 YHDNPLA---LKLLREKGVAIEQVTLDHKY 147


>gi|290558972|gb|EFD92355.1| CMP/dCMP deaminase zinc-binding [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 159

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 60/177 (33%), Gaps = 56/177 (31%)

Query: 1   MPVSSFDARFMSAALRFSRWH---VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---- 53
           M   S+D  F     + S       G        AC+IVK+  ++  G     G P    
Sbjct: 1   MSRPSWDEYFTEITKKVSERSTCDRGHA------ACVIVKENRILATGY---AGSPKGMP 51

Query: 54  ----------------------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
                                       HAE  A+ +A   G     +TAY+T+EPC   
Sbjct: 52  HCDDVGHLLRKQYDNETGEITVHCLRTVHAEQNAITQAAKFGVSLSDSTAYITMEPCF-- 109

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
                CA+ +++ GI+RVV      D       +    + GI ++   + E +    
Sbjct: 110 ----TCAKMLVQVGIKRVVAFKRYHD---DKDTVDLFQKAGIPLEVKNDKEEEYENK 159


>gi|268611051|ref|ZP_06144778.1| dCMP deaminase [Ruminococcus flavefaciens FD-1]
          Length = 160

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 54/151 (35%), Gaps = 34/151 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV----------------- 46
           S+D  FM  A+  ++     ++    V   IV D   ++  G                  
Sbjct: 8   SWDEYFMGIAMLSAQRSKDNST---QVGACIVNDEHKIVSVGYNGMPTGCDDDEMPWERS 64

Query: 47  ------TAYGGCPHAEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +      G T YVTL PC+       CA+ II+ GI+R
Sbjct: 65  AENELDTKYPFVCHAELNAILNSNIGNLSGCTVYVTLFPCNE------CAKAIIQSGIKR 118

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           VV   +      S +    L  K  +     
Sbjct: 119 VVYYSNKYSDTNSVKASCLLFDKCGVKYEEY 149


>gi|322805608|emb|CBZ03173.1| tRNA-specific adenosine-34 deaminase [Clostridium botulinum H04402
           065]
          Length = 157

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 31/90 (34%), Gaps = 15/90 (16%)

Query: 30  SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
                IVKDG VI        G      H EV  + +A +     +  G   Y T EPC 
Sbjct: 25  PFGSAIVKDGEVIAVAHNTVVGDNDPTAHGEVNVIRKACKKLNTFDLSGCELYTTSEPC- 83

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
                P C   II   I +V       D R
Sbjct: 84  -----PMCMSAIIWANISKVYYGCTVEDAR 108


>gi|294055423|ref|YP_003549081.1| CMP/dCMP deaminase zinc-binding protein [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614756|gb|ADE54911.1| CMP/dCMP deaminase zinc-binding protein [Coraliomargarita
           akajimensis DSM 45221]
          Length = 181

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 39/119 (32%), Gaps = 17/119 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
            FM+ A   +            +  +I  +G +I               HAE+ A+ +A 
Sbjct: 21  YFMAHAFNEAIEAW--KKDEVPIGAVIEYEGRIIASAHNQSRSTNDPTAHAEILAISQAA 78

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                        YVT EPC      P C+  ++   I +V   + D  +   G  +  
Sbjct: 79  NTLGDWRLNECRLYVTKEPC------PMCSGALVIARIGKVYYGLPDEKMGCVGGAVDL 131


>gi|226948555|ref|YP_002803646.1| guanine deaminase [Clostridium botulinum A2 str. Kyoto]
 gi|226842608|gb|ACO85274.1| guanine deaminase [Clostridium botulinum A2 str. Kyoto]
          Length = 157

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 31/90 (34%), Gaps = 15/90 (16%)

Query: 30  SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
                IVKDG VI        G      H EV  + +A +     +  G   Y T EPC 
Sbjct: 25  PFGSAIVKDGEVIAVAHNTVVGDNDPTAHGEVNVIRKACKKLNTFDLSGCELYTTSEPC- 83

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
                P C   II   I +V       D R
Sbjct: 84  -----PMCMSAIIWANISKVYYGCTVEDAR 108


>gi|168185037|ref|ZP_02619701.1| guanine deaminase [Clostridium botulinum Bf]
 gi|237794579|ref|YP_002862131.1| guanine deaminase [Clostridium botulinum Ba4 str. 657]
 gi|182671910|gb|EDT83871.1| guanine deaminase [Clostridium botulinum Bf]
 gi|229262002|gb|ACQ53035.1| guanine deaminase [Clostridium botulinum Ba4 str. 657]
          Length = 157

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 31/90 (34%), Gaps = 15/90 (16%)

Query: 30  SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
                IVKDG VI        G      H EV  + +A +     +  G   Y T EPC 
Sbjct: 25  PFGSAIVKDGEVIAVAHNTVVGDNDPTAHGEVNVIRKACKKLSTFDLSGCELYTTSEPC- 83

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
                P C   II   I +V       D R
Sbjct: 84  -----PMCMSAIIWANISKVYYGCTVEDAR 108


>gi|319946726|ref|ZP_08020960.1| competence protein comEB [Streptococcus australis ATCC 700641]
 gi|319746774|gb|EFV99033.1| competence protein comEB [Streptococcus australis ATCC 700641]
          Length = 163

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 46/123 (37%), Gaps = 30/123 (24%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           ++D  F + AL  S      T     V  ++VKD  V+  G                   
Sbjct: 15  AWDEYFAAQALLISNRA---TCKRAKVGAVLVKDHKVVATGYNGSVSGTEHCLDHDCLMV 71

Query: 54  --------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                   HAEV A+ +  E    +G TAYVT  PC +      C + +++ G +RVV  
Sbjct: 72  EGHCVRTLHAEVNAILQGAERGIPKGFTAYVTHFPCLN------CTKQLLQVGCKRVVYI 125

Query: 104 VDD 106
              
Sbjct: 126 HQY 128


>gi|78222831|ref|YP_384578.1| CMP/dCMP deaminase, zinc-binding protein [Geobacter metallireducens
           GS-15]
 gi|78194086|gb|ABB31853.1| CMP/dCMP deaminase, zinc-binding protein [Geobacter metallireducens
           GS-15]
          Length = 154

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 52/157 (33%), Gaps = 43/157 (27%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
           M   ++D  FM      ++    L      V  +IVKD  ++  G               
Sbjct: 1   MTRPTWDEYFMEITHLVAKRSTCLRR---QVGAVIVKDKNILATGYNGAPSGVAHCLEVG 57

Query: 47  -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE  A+ +A   G    G T Y T  PC        C++
Sbjct: 58  CLRAKLGIPSGERHELCRGLHAEQNAIIQAAKHGINIDGGTLYCTTMPCII------CSK 111

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            +I  GIRRVV      D        + + + G++V+
Sbjct: 112 MLINAGIRRVVYEEGYSD----ELAREMIGESGVVVE 144


>gi|116628878|ref|YP_814050.1| deoxycytidylate deaminase [Lactobacillus gasseri ATCC 33323]
 gi|238852844|ref|ZP_04643249.1| ComE operon protein 2 [Lactobacillus gasseri 202-4]
 gi|268318770|ref|YP_003292426.1| hypothetical protein FI9785_275 [Lactobacillus johnsonii FI9785]
 gi|282852543|ref|ZP_06261885.1| putative ComE operon protein 2 [Lactobacillus gasseri 224-1]
 gi|300362471|ref|ZP_07058647.1| competence protein ComEB [Lactobacillus gasseri JV-V03]
 gi|116094460|gb|ABJ59612.1| Deoxycytidylate deaminase [Lactobacillus gasseri ATCC 33323]
 gi|238834538|gb|EEQ26770.1| ComE operon protein 2 [Lactobacillus gasseri 202-4]
 gi|262397145|emb|CAX66159.1| conserved hypothetical protein [Lactobacillus johnsonii FI9785]
 gi|282556285|gb|EFB61905.1| putative ComE operon protein 2 [Lactobacillus gasseri 224-1]
 gi|300353462|gb|EFJ69334.1| competence protein ComEB [Lactobacillus gasseri JV-V03]
          Length = 162

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 34/150 (22%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------------- 53
             FM  AL  ++     T     V  ++VKD  +I  G      G P             
Sbjct: 10  QYFMMQALVIAQRS---TCDRALVGSVLVKDDRMIATGYNGSVSGQPHCDDVGHLMVDGH 66

Query: 54  -----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                H+E+ AL +    G    G   YVT  PC +  +       +++ GI+++    D
Sbjct: 67  CVRTIHSEMNALIQCAKNGISTEGTEIYVTYFPCFNCSKC------LVQAGIKKINYYYD 120

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135
             D  ++   L+ L +KG+ ++++      
Sbjct: 121 YHDNPLA---LKLLREKGVAIEQVTLDHKY 147


>gi|328471033|gb|EGF41944.1| hypothetical protein VP10329_09562 [Vibrio parahaemolyticus 10329]
          Length = 177

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 69/212 (32%), Gaps = 44/212 (20%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITG-----FISKNQVHLLRAQSDAILVGIGTVLADDPE 206
             + IA S D  I         +        I    V  L  + D +++G  T+      
Sbjct: 3   NIVFIATSMDGYIADKQGKLDWLQSVPNPDNIDTGFV-PLMERIDGLVMGRNTLD----- 56

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
                          ++L           +           V  N    +   +  K   
Sbjct: 57  ---------------VVLSFGCNWPYSKPVF----------VLSNTMTEVPQGYEDK--- 88

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            ++    +LK +L  L  +G   L ++GG     +F+   L+D +++ R  I++G GG+P
Sbjct: 89  -VFLVKGELKDVLADLNTKGFNELYIDGGVT-IQNFLKEDLIDEMVITRFPILLG-GGVP 145

Query: 327 SPLEEGYLEKNFMCVRRDYFGSDVC-LEYIGK 357
               +     NF   + +     +    Y+ +
Sbjct: 146 -LFGDLAQPLNFKVTKSEVVLDTLVQTTYVRE 176


>gi|284989070|ref|YP_003407624.1| CMP/dCMP deaminase protein [Geodermatophilus obscurus DSM 43160]
 gi|284062315|gb|ADB73253.1| CMP/dCMP deaminase zinc-binding protein [Geodermatophilus obscurus
           DSM 43160]
          Length = 154

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 49/132 (37%), Gaps = 22/132 (16%)

Query: 30  SVACLIV-KDGIVIGRGVTAY--GGCP--HAEVQALEEA------GEEARGATAYVTLEP 78
            +  +++  DG V+          G P  HAEV AL  A      G    G T  VTLEP
Sbjct: 26  PIGAVVLGPDGTVLAEAANEREKQGDPTAHAEVLALRAAARVHGDGWRLTGTTLVVTLEP 85

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESE 133
           C        CA   +   + R+V   DDP    +G          L+ +  +   +   E
Sbjct: 86  C------TMCAGASVLARVDRIVYGADDPKAGAAGSLWDVVRDRRLNHRPQVTGGVRAEE 139

Query: 134 GKIFLHAYLTRQ 145
               L A+  RQ
Sbjct: 140 SATLLRAFFRRQ 151


>gi|319405143|emb|CBI78749.1| Cytosine/adenosine deaminase [Bartonella sp. AR 15-3]
          Length = 150

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 47/152 (30%), Gaps = 22/152 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG--VTAYGGCP--HAEVQALEEA--- 63
           M  AL  ++           V  +I     +I R    T     P  HAE++ +  A   
Sbjct: 6   MEIALLEAQSAKKQDEV--PVGAVITHGQTIIARAGNYTKKSHDPTGHAEMRVIRIACQI 63

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW--- 118
              E       YVTLEPC        CA  I    IR +     D        G ++   
Sbjct: 64  FKSERIPECDLYVTLEPC------TMCAAAISFARIRNLYYATKDSKGGAIEHGSRFYQQ 117

Query: 119 --LSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
                K  +     E E    L  +  ++  +
Sbjct: 118 STCHHKPNVYSGFKEKEASQLLKDFFIQKRHQ 149


>gi|302335967|ref|YP_003801174.1| dCMP deaminase [Olsenella uli DSM 7084]
 gi|301319807|gb|ADK68294.1| dCMP deaminase [Olsenella uli DSM 7084]
          Length = 160

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 42/159 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
           S+D  FM  A+  S            V   I   +  ++  G     G P          
Sbjct: 10  SWDEFFMRVAIAASLRSK---DPKTQVGACIADTNDRILSVGY---NGTPSGLDDDEFPW 63

Query: 54  ---------------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                          HAE  A+     + ++ +GA  YVTL PC    ++      +++ 
Sbjct: 64  GTSEDPLFDKHNYVIHAEANAILNYRGSLKDMQGAKVYVTLFPCQECAKT------LVQA 117

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQK-GIIVDRMMESE 133
           G+  V+   D  D     R  + +  + GI   ++   E
Sbjct: 118 GVGEVIYLDDKYDGTEGNRVSKSVFDRCGITYRQVRLPE 156


>gi|301098687|ref|XP_002898436.1| cytosine deaminase [Phytophthora infestans T30-4]
 gi|262105207|gb|EEY63259.1| cytosine deaminase [Phytophthora infestans T30-4]
          Length = 145

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 56/148 (37%), Gaps = 20/148 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGE 65
           F+ AA+  ++  +GL+     +  ++  D  +  RG            HAE+  LE AG 
Sbjct: 4   FLQAAIDEAK--LGLSEGGIPIGSVLEIDDKIAARGHNRRVQRGSAVLHAEMDCLENAGR 61

Query: 66  EARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                   AT Y TL PC        C+  ++   I  +VV  +           +++  
Sbjct: 62  LTAADYARATLYSTLSPCDM------CSGAVLLYKIPTIVVGENKTFQGPG----EYVRS 111

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           +G+ V  + +      +  ++  + +  
Sbjct: 112 RGVDVKLLQDETCIKLMQDFIHDKPQLW 139


>gi|126727514|ref|ZP_01743348.1| cytidine and deoxycytidylate deaminase family protein
           [Rhodobacterales bacterium HTCC2150]
 gi|126703294|gb|EBA02393.1| cytidine and deoxycytidylate deaminase family protein
           [Rhodobacterales bacterium HTCC2150]
          Length = 143

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 52/147 (35%), Gaps = 23/147 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGC----PHAEVQALEEA-- 63
           M  AL  +R   G     P V  +I+ +DG VI +             HAE+ A+  A  
Sbjct: 1   MDIALDEAR-AAGQRGEVP-VGAVILSRDGQVIAQAGNETRAQNDPIAHAEILAIRAACS 58

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
               E  +G   YVTLEPC+        A  I    I RV     DP      +G +   
Sbjct: 59  ALGRERLQGFDLYVTLEPCAMC------AAAIAAARIGRVYYGASDPKSGGVAQGARVFD 112

Query: 121 QKG-----IIVDRMMESEGKIFLHAYL 142
                    + D +   E +  L  + 
Sbjct: 113 HAQSHHKPEVYDGISAKECENLLKDFF 139


>gi|265751677|ref|ZP_06087470.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Bacteroides sp. 3_1_33FAA]
 gi|263236469|gb|EEZ21939.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Bacteroides sp. 3_1_33FAA]
          Length = 225

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 7/114 (6%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVI-IVTENDDPVLALAFRKKNINIIYCDCR--DLKKL 278
           II+D + KL         A   P++ IV+E          R   I+ I       DL + 
Sbjct: 84  IIVDTYGKLRWQE---GEADGYPLLCIVSEQVSEEYLETLRTLGISWIAAGAERIDLPQA 140

Query: 279 LTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           + +L    GV  L + GG  +   F+ + L+D + +  +  + G  G  +  + 
Sbjct: 141 MELLHEHFGVERLAIVGGGHICGGFLEAGLIDKVSIMVAPGIDGRKGQTAVFDG 194


>gi|21227336|ref|NP_633258.1| hypothetical protein MM_1234 [Methanosarcina mazei Go1]
 gi|20905692|gb|AAM30930.1| conserved protein [Methanosarcina mazei Go1]
          Length = 128

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 10/115 (8%)

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
                 + T   +P+     R+KN+  +  + R+       L       + + GG+ +  
Sbjct: 18  ADKKTYVFTGQKEPL----LREKNVEFVSGNVREFT---RQLKENTDKDIWLVGGSQLIK 70

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-LEY 354
           +F+   LVD +I++   I++G GGIP   +    E        + + S +   EY
Sbjct: 71  AFLEEDLVDDMIVFIVPIILG-GGIP-LFDRIGKEIKLKMTNTERYESGLLRTEY 123


>gi|119480441|ref|XP_001260249.1| deoxycytidylate deaminase [Neosartorya fischeri NRRL 181]
 gi|119408403|gb|EAW18352.1| deoxycytidylate deaminase [Neosartorya fischeri NRRL 181]
          Length = 362

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 46/149 (30%), Gaps = 41/149 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-- 53
           ++D  FM  A   +            V C++V++  VI  G             GGCP  
Sbjct: 188 NWDLYFMQLA-SLAAQRSNCMKR--RVGCVLVRERRVISTGYNGTPRHLTNCNEGGCPRC 244

Query: 54  ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                           HAE  AL EAG E    G+  Y    PC        C   I + 
Sbjct: 245 NRGEGGGVGLSTCLCLHAEENALLEAGRERIREGSILYCDTCPCL------TCTVKIAQV 298

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           GI  VV         +       L   G+
Sbjct: 299 GISEVVYSQGY---NMDQESAAILEAAGV 324


>gi|315654318|ref|ZP_07907226.1| cytidine/deoxycytidylate deaminase [Mobiluncus curtisii ATCC 51333]
 gi|315491353|gb|EFU80970.1| cytidine/deoxycytidylate deaminase [Mobiluncus curtisii ATCC 51333]
          Length = 180

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 44/123 (35%), Gaps = 21/123 (17%)

Query: 13  AALR----FSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-----GGCPHAEVQALEEA 63
            AL      ++   G     P  A ++  +GIV G G+            HAE+ AL EA
Sbjct: 35  RALETAYGLAQKA-GRAGDIPVGAVVLTPEGIVAGLGLNQRENPPYDPSAHAEIVALREA 93

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                    +G T   TLEPC        CA  I+   I R++    DP     G     
Sbjct: 94  AGRLERWNLKGCTLVATLEPC------TMCAGAIVNARISRLIFGAWDPKAGACGSIRDV 147

Query: 119 LSQ 121
           +  
Sbjct: 148 VRD 150


>gi|326203162|ref|ZP_08193028.1| CMP/dCMP deaminase zinc-binding [Clostridium papyrosolvens DSM
           2782]
 gi|325986808|gb|EGD47638.1| CMP/dCMP deaminase zinc-binding [Clostridium papyrosolvens DSM
           2782]
          Length = 137

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 19/97 (19%)

Query: 32  ACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEE------ARGATAYVTLEPCSH 81
           A +I  +G ++ +G T     +    HAE+ A+  A +        +G   Y T EPC  
Sbjct: 16  AAVIDAEGNIVSKGKTTVRDDHDPTAHAEINAIRSACKRLKVDVLPKGYWLYSTFEPC-- 73

Query: 82  YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
               P CA  II  G   VV      +    G+ + W
Sbjct: 74  ----PLCAAAIIWAGFEGVVYA---NNADHRGKEINW 103


>gi|325001377|ref|ZP_08122489.1| bifunctional deaminase-reductase domain-containing protein
           [Pseudonocardia sp. P1]
          Length = 73

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSD 349
           GG  V  +F+ + LVD + +  +   +G+   P  + +G   +        V     G  
Sbjct: 1   GGGVVHTAFLTAGLVDELHVVVAPFFVGDPRAPRFVHDGGFPQGPGAPMELVEARPIGDL 60

Query: 350 VCLEYIGK 357
           V L Y  +
Sbjct: 61  VLLHYRVR 68


>gi|81429276|ref|YP_396277.1| putative dihydrofolate reductase [Lactobacillus sakei subsp. sakei
           23K]
 gi|78610919|emb|CAI55971.1| Putative dihydrofolate reductase [Lactobacillus sakei subsp. sakei
           23K]
          Length = 179

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           ++ + +  L  +   ++ + GGA      + ++LVD +I+  + +++G+G   S +    
Sbjct: 97  NVPEFVRQLKAQDGGNIWLVGGAETFTMLLKAQLVDELIITIAPVLLGDG--ISLISTHL 154

Query: 334 LEKNFMCVRRDYFGSDVCLEY 354
            +      +    G  V L Y
Sbjct: 155 TDMPLELSKTRQLGQFVELTY 175


>gi|226504812|ref|NP_001140513.1| hypothetical protein LOC100272576 [Zea mays]
 gi|194699798|gb|ACF83983.1| unknown [Zea mays]
 gi|195610442|gb|ACG27051.1| cytidine/deoxycytidylate deaminase family protein [Zea mays]
          Length = 186

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 40/116 (34%), Gaps = 16/116 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           V   D +F+S A+  +   V      P    ++V +  VI               HAEV 
Sbjct: 27  VQDRDHKFLSKAVEEAYRGVDCGDGGP-FGAVVVHNDEVIVSCHNMVLKNTDPTAHAEVT 85

Query: 59  ALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           A+ EA ++           Y + EPC      P C   +    I+R+V        
Sbjct: 86  AIREACKKLGKIELSDCEIYASCEPC------PMCFGAVHLSRIKRLVYGAKAEAA 135


>gi|158337961|ref|YP_001519137.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Acaryochloris marina MBIC11017]
 gi|158308202|gb|ABW29819.1| riboflavin biosynthesis protein RibD C-terminus domain protein
           [Acaryochloris marina MBIC11017]
          Length = 180

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 56/183 (30%), Gaps = 51/183 (27%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQV--------HLLRAQSDAILVGIGT---V 200
           +++ IA S D  I         +    +   V            A  D +++G  T   V
Sbjct: 5   VSVFIATSLDGFIARTNGDIDWLN--EANAAVPEGEDCGYQAFMASVDVLVMGRKTYEQV 62

Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
           L+                   I+L            I+     P  I    D P++    
Sbjct: 63  LS--------FGAWPYGQTRVIVLSRTP--------IQFPDALPACITHSADPPLM---- 102

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
                            L   LV  G   L ++GGA     F+ + L+D + +    I++
Sbjct: 103 -----------------LYNRLVQEGAQHLYIDGGAT-IQRFLAAGLIDELTITVIPILL 144

Query: 321 GEG 323
           GEG
Sbjct: 145 GEG 147


>gi|317054801|ref|YP_004103268.1| dCMP deaminase [Ruminococcus albus 7]
 gi|315447070|gb|ADU20634.1| dCMP deaminase [Ruminococcus albus 7]
          Length = 159

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 50/145 (34%), Gaps = 34/145 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV-------------TAYG 50
           S+D  FM  A   ++        +  V   IV +   ++  G                  
Sbjct: 8   SWDEYFMGIAHLSAKRSK---DPSTQVGACIVSEENKILSVGYNGMPTGCNDDDMPWERD 64

Query: 51  GC---------PHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           G           HAE+ A L  +    + A  YV+L PC+       CA+ II+ GI+ V
Sbjct: 65  GDFLETKYPFVCHAELNAILNRSTGSLKNARIYVSLFPCNE------CAKAIIQSGIKEV 118

Query: 101 VVCVDDP-DVRVSGRGLQWLSQKGI 124
           +   D   D        +  +  G+
Sbjct: 119 IYGDDKYADTDGVRASKKMFNMAGV 143


>gi|320009620|gb|ADW04470.1| CMP/dCMP deaminase zinc-binding protein [Streptomyces flavogriseus
           ATCC 33331]
          Length = 142

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 45/122 (36%), Gaps = 18/122 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----CPHAEVQALEEAGE 65
           M  AL  +      ++ +  V  +++  DG ++  G            HAEV AL  A  
Sbjct: 1   MRQALDEAAQAA--SAGDVPVGAVVLGPDGALLATGHNEREASHDPTAHAEVLALRRAAA 58

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                   G T  VTLEPC        CA  +++  + RVV    D     +G     + 
Sbjct: 59  ALGSWRLTGCTLVVTLEPC------TMCAGALVQSRVARVVYGARDEKAGAAGSLWDVVR 112

Query: 121 QK 122
            +
Sbjct: 113 DR 114


>gi|187924315|ref|YP_001895957.1| CMP/dCMP deaminase zinc-binding [Burkholderia phytofirmans PsJN]
 gi|187715509|gb|ACD16733.1| CMP/dCMP deaminase zinc-binding [Burkholderia phytofirmans PsJN]
          Length = 171

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 43/127 (33%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE---------EARGATAYVTLEPCS 80
            V  ++V+   VI  G     G       A   A              G   YVTLEPC 
Sbjct: 18  PVGAVLVRGEEVIATGFNHPIGGHDPSAHAEMAALRAAAQAVENYRLPGCELYVTLEPCL 77

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  CA  I+   I RVV    DP     G  +       L+    ++  ++E+E  
Sbjct: 78  M------CAGAIMHARIARVVFGARDPKTGACGSVVDAFANPQLNHHTTVIGGVLENECG 131

Query: 136 IFLHAYL 142
             L ++ 
Sbjct: 132 AALKSFF 138


>gi|115398407|ref|XP_001214795.1| deoxycytidylate deaminase [Aspergillus terreus NIH2624]
 gi|114192986|gb|EAU34686.1| deoxycytidylate deaminase [Aspergillus terreus NIH2624]
          Length = 259

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 46/163 (28%), Gaps = 52/163 (31%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-- 53
           ++D  FM  A   +            V C++V+D  VI  G             GGCP  
Sbjct: 81  NWDQYFMQLA-SLAALRSNCMKR--RVGCVLVRDHRVISTGYNGTPRHLKNCNEGGCPRC 137

Query: 54  ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                           HAE  AL EAG E    GA  Y    PC        C   I + 
Sbjct: 138 NRGEGGGVGLSTCLCLHAEENALLEAGRERIREGAILYCDTCPCL------TCTVKIAQV 191

Query: 96  GIRRVVVCVDDPD--------------VRVSGRGLQWLSQKGI 124
           GI  VV                          +    L   GI
Sbjct: 192 GISEVVYSQGYNMDQDVRTLLPPFPTGPLTRFKSAAILEAAGI 234


>gi|169350182|ref|ZP_02867120.1| hypothetical protein CLOSPI_00926 [Clostridium spiroforme DSM 1552]
 gi|169292965|gb|EDS75098.1| hypothetical protein CLOSPI_00926 [Clostridium spiroforme DSM 1552]
          Length = 154

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 47/148 (31%), Gaps = 36/148 (24%)

Query: 8   ARFMSAALRFSRWHVGLTS-TNPSVACLIVK-DGIVIGRGV------------------- 46
             FM      ++     +   N  V   IV  +  ++G G                    
Sbjct: 9   QYFMG----VAKLSAFRSKDPNTQVGACIVSPENKIVGVGYNGLPWGCDDKEFPWEVREG 64

Query: 47  ----TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
               T Y    HAE+ A+  +    +G   YV+L PC        C + II+ GI  +V 
Sbjct: 65  DLYDTKYPYVVHAELNAILNSIGNLKGCRIYVSLFPCHE------CVKAIIQSGISEIVF 118

Query: 103 CVDDPD-VRVSGRGLQWLSQKGIIVDRM 129
             D            + L   G+   ++
Sbjct: 119 EDDKYSGTDSDRAAKRMLDAAGVKYTKV 146


>gi|163748467|ref|ZP_02155721.1| putative deoxycytidylate deaminase [Shewanella benthica KT99]
 gi|161332045|gb|EDQ02722.1| putative deoxycytidylate deaminase [Shewanella benthica KT99]
          Length = 149

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 49/152 (32%), Gaps = 31/152 (20%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----------- 51
           ++ +  RF+  A   + W       +  V  +I +D  ++  G   Y             
Sbjct: 2   MTKWATRFLQMAELVASWSK---DPSTQVGAVITEDNRIVSLGFNGYPHGISDSAETDNR 58

Query: 52  ------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                   HAE  A+  A  +  G   +VT  PC      P CA  II+ G+  V     
Sbjct: 59  EMKLLKTLHAEENAILYAKRDLSGCEIWVTHFPC------PNCAAKIIQTGLSTVHSPQP 112

Query: 106 DPD-----VRVSGRGLQWLSQKGIIVDRMMES 132
             D               L Q G+ VD M   
Sbjct: 113 SEDFLSRWGEKIKISQDMLDQAGVKVDWMQLE 144


>gi|78188600|ref|YP_378938.1| deoxycytidylate deaminase, putative [Chlorobium chlorochromatii
           CaD3]
 gi|78170799|gb|ABB27895.1| deoxycytidylate deaminase, putative [Chlorobium chlorochromatii
           CaD3]
          Length = 173

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 55/160 (34%), Gaps = 44/160 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D  FMS A   SR     T T   +  +IV++  ++  G                   
Sbjct: 22  SWDEYFMSVAHLVSRRA---TCTRAHIGAVIVRENNILSTGYNGAPTGLPHCHDDNCRIY 78

Query: 47  --TAYGGCP--------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFII 93
             T   G          HAE+ A+ +A   G   R +  Y+T  PC H      C + +I
Sbjct: 79  RCTHPDGTVEENCVNTIHAEINAIAQAAKHGISIRDSDIYITASPCIH------CLKVLI 132

Query: 94  ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
             GI+ +                + L    I + ++  ++
Sbjct: 133 NVGIKTIYY----DKPYKIEHIDELLRLSNIRLVQVQMAD 168


>gi|296111710|ref|YP_003622092.1| dCMP deaminase [Leuconostoc kimchii IMSNU 11154]
 gi|295833242|gb|ADG41123.1| dCMP deaminase [Leuconostoc kimchii IMSNU 11154]
          Length = 160

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 61/168 (36%), Gaps = 33/168 (19%)

Query: 1   MPVS--SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP---- 53
           MP    S+D  F++ A   S      T T   V  +IV++  +I  G      G P    
Sbjct: 1   MPQKRISWDQYFIAQAAILSTRS---TCTRLHVGAVIVQNNRIITSGYNGAVSGTPHCTD 57

Query: 54  --------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                         HAE  AL +A   G    GA  YVT  PC H      C + +++ G
Sbjct: 58  VGDLIVDGHCIRAVHAEQNALMQAAQMGISVDGAEVYVTDVPCIH------CTKLLLQAG 111

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
           I ++    D  +   +   L         V    ++  +I L+ ++  
Sbjct: 112 ISKINFMRDYHNDAFAEALLAEKHVSLQQVPFSQQTAEQINLNQFIMH 159


>gi|253565359|ref|ZP_04842814.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251945638|gb|EES86045.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 225

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 7/106 (6%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVI-IVTENDDPVLALAFRKKNINIIYCDCR--DLKKL 278
           II+D + KL         A   P++ IV+E          R   I+ I       DL + 
Sbjct: 84  IIVDTYGKLRWQE---GEADGHPLLCIVSEQVSEEYLETLRTLGISWIAAGTERIDLPEA 140

Query: 279 LTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           + +L    GV  L + GG  +   F+ + L+D + +  +  + G  
Sbjct: 141 MELLHEHFGVERLAIVGGGHICGGFLEAGLIDEVSIMVAPGIDGRK 186


>gi|69247261|ref|ZP_00604279.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
           [Enterococcus faecium DO]
 gi|257878126|ref|ZP_05657779.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,230,933]
 gi|257881089|ref|ZP_05660742.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,502]
 gi|257884751|ref|ZP_05664404.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,501]
 gi|257889675|ref|ZP_05669328.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,410]
 gi|257892388|ref|ZP_05672041.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,408]
 gi|258616373|ref|ZP_05714143.1| comE operon protein 2, putative [Enterococcus faecium DO]
 gi|260559174|ref|ZP_05831360.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium C68]
 gi|261207708|ref|ZP_05922393.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium TC 6]
 gi|289566284|ref|ZP_06446715.1| ComE operon protein 2 [Enterococcus faecium D344SRF]
 gi|293552881|ref|ZP_06673539.1| ComE operon protein 2 [Enterococcus faecium E1039]
 gi|293563910|ref|ZP_06678333.1| ComE operon protein 2 [Enterococcus faecium E1162]
 gi|293569408|ref|ZP_06680705.1| dCMP deaminase [Enterococcus faecium E1071]
 gi|294615862|ref|ZP_06695704.1| ComE operon protein 2 [Enterococcus faecium E1636]
 gi|294617297|ref|ZP_06696938.1| putative competence protein [Enterococcus faecium E1679]
 gi|294623507|ref|ZP_06702355.1| ComE operon protein 2 [Enterococcus faecium U0317]
 gi|314937547|ref|ZP_07844875.1| ComE operon protein 2 [Enterococcus faecium TX0133a04]
 gi|314941461|ref|ZP_07848350.1| ComE operon protein 2 [Enterococcus faecium TX0133C]
 gi|314949641|ref|ZP_07852962.1| ComE operon protein 2 [Enterococcus faecium TX0082]
 gi|314951823|ref|ZP_07854861.1| ComE operon protein 2 [Enterococcus faecium TX0133A]
 gi|314992768|ref|ZP_07858172.1| ComE operon protein 2 [Enterococcus faecium TX0133B]
 gi|314996525|ref|ZP_07861563.1| ComE operon protein 2 [Enterococcus faecium TX0133a01]
 gi|68194934|gb|EAN09403.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
           [Enterococcus faecium DO]
 gi|257812354|gb|EEV41112.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,230,933]
 gi|257816747|gb|EEV44075.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,502]
 gi|257820589|gb|EEV47737.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,501]
 gi|257826035|gb|EEV52661.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,410]
 gi|257828767|gb|EEV55374.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,408]
 gi|260074931|gb|EEW63247.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium C68]
 gi|260078091|gb|EEW65797.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium TC 6]
 gi|289161924|gb|EFD09793.1| ComE operon protein 2 [Enterococcus faecium D344SRF]
 gi|291587934|gb|EFF19785.1| dCMP deaminase [Enterococcus faecium E1071]
 gi|291591248|gb|EFF22915.1| ComE operon protein 2 [Enterococcus faecium E1636]
 gi|291596454|gb|EFF27706.1| putative competence protein [Enterococcus faecium E1679]
 gi|291597101|gb|EFF28304.1| ComE operon protein 2 [Enterococcus faecium U0317]
 gi|291603015|gb|EFF33209.1| ComE operon protein 2 [Enterococcus faecium E1039]
 gi|291604143|gb|EFF33654.1| ComE operon protein 2 [Enterococcus faecium E1162]
 gi|313589311|gb|EFR68156.1| ComE operon protein 2 [Enterococcus faecium TX0133a01]
 gi|313592701|gb|EFR71546.1| ComE operon protein 2 [Enterococcus faecium TX0133B]
 gi|313595997|gb|EFR74842.1| ComE operon protein 2 [Enterococcus faecium TX0133A]
 gi|313599713|gb|EFR78556.1| ComE operon protein 2 [Enterococcus faecium TX0133C]
 gi|313643090|gb|EFS07670.1| ComE operon protein 2 [Enterococcus faecium TX0133a04]
 gi|313643980|gb|EFS08560.1| ComE operon protein 2 [Enterococcus faecium TX0082]
          Length = 179

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 31/137 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            +D  FM+ A+  S            V   +V++  +I  G                   
Sbjct: 26  PWDQYFMAQAVLLSLRSTCTRLE---VGATLVREKRIIAGGYNGAVSGDVHCIDEGCYVV 82

Query: 54  --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE+ AL +    G    G+  YVT  PC        C + +++ G++ +  
Sbjct: 83  DGHCLRTIHAEMNALLQCAKLGIPTEGSEIYVTHFPCL------ACTKALLQAGVKGINY 136

Query: 103 CVDDPDVRVSGRGLQWL 119
             D  +   +   ++ L
Sbjct: 137 LHDYRNDPYAQALIEQL 153


>gi|313889696|ref|ZP_07823339.1| putative ComE operon protein 2 [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121993|gb|EFR45089.1| putative ComE operon protein 2 [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 152

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 36/154 (23%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY---------GG-------- 51
            FM+ A   S+     T     V  ++VKD  +I  G              G        
Sbjct: 10  YFMANAELISKRS---TCDRAFVGAVLVKDNRIIATGYNGGVSATDNCNEAGHYMEDGHC 66

Query: 52  --CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV-CVD 105
               HAE+ AL +    G    G   YVT  PC +      C + +++ GI+++      
Sbjct: 67  IRTVHAEMNALIQCAKEGISTDGTELYVTHFPCIN------CTKALLQAGIKKITYKAHY 120

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
            P        ++ + +KG+   +    E  +  H
Sbjct: 121 RPHPFA----IELMEKKGVAYVQHNVPELTLGGH 150


>gi|50290647|ref|XP_447756.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527067|emb|CAG60703.1| unnamed protein product [Candida glabrata]
          Length = 259

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 67/190 (35%), Gaps = 44/190 (23%)

Query: 9   RFMSAALRFSRWHV--GLTSTNPSVACLIV--KDGIVIGRGVTAYG----GCPHAEVQAL 60
           + + +AL+ +R+ +  G T     VAC+ V  K   V+  G+        G  HAE  A+
Sbjct: 6   KHIDSALKLARYALDHGET----PVACVFVHEKSDSVVAYGLNDTNDSLSGTAHAEFVAM 61

Query: 61  EEAGEEARG--------------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               +  +                  YVT+EPC        CA  + + GI ++V    +
Sbjct: 62  RMLRDAVQAQGYASVQLKQLFKEIVCYVTVEPCIM------CASALKQMGIHKIVFGCGN 115

Query: 107 PDVRVSGRGLQWLSQ-----KG-------IIVDRMMESEGKIFLHAYLTRQVEKRSHITL 154
                +G  L   S       G       I+V  +   E  + L  +  R+ ++      
Sbjct: 116 DRFGGNGTVLSIHSDKSTTVAGSTEYDRTILVPGIRRREAIMLLRYFYVRENDRAPKPRT 175

Query: 155 KIAVSQDNMI 164
           K   + D   
Sbjct: 176 KAERNLDKNT 185


>gi|222530354|ref|YP_002574236.1| CMP/dCMP deaminase zinc-binding [Caldicellulosiruptor bescii DSM
           6725]
 gi|222457201|gb|ACM61463.1| CMP/dCMP deaminase zinc-binding [Caldicellulosiruptor bescii DSM
           6725]
          Length = 143

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 17/124 (13%)

Query: 30  SVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCSHYG 83
            VA  +VKD  +I      +     HAE+ A+ +A      ++ R    +VT EPC    
Sbjct: 21  PVAAAVVKDRRIISIKRNDSKKAIYHAEILAIIDATSKLSTKDLRSCEMFVTKEPC---- 76

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGKIFL 138
             P C   I+   ++R+     D  +  +           L+ K  ++  + E E ++ L
Sbjct: 77  --PMCMSAIVLSKVKRLYFGARDFKMGAAESCFNLSQNPFLNHKVEVIGGICEDECRLLL 134

Query: 139 HAYL 142
             + 
Sbjct: 135 KRFF 138


>gi|193215780|ref|YP_001996979.1| CMP/dCMP deaminase [Chloroherpeton thalassium ATCC 35110]
 gi|193089257|gb|ACF14532.1| CMP/dCMP deaminase zinc-binding [Chloroherpeton thalassium ATCC
           35110]
          Length = 179

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 55/164 (33%), Gaps = 44/164 (26%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP----------- 53
           +D  FMS A   S+     T     +  +IV+D  ++  G      G P           
Sbjct: 26  WDEYFMSVAHLISQRA---TCKRAHIGAVIVRDNNILATGYNGAPSGLPHCDDDNCLIYT 82

Query: 54  ----------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE+ A+ +A   G   + A  YVT  PC +      C + +I 
Sbjct: 83  STHPDGTIEQNCMNTIHAEMNAIIQAAKHGVSIKDADIYVTASPCIN------CLKALIN 136

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138
            GI+++                  L + G+ + ++     +I  
Sbjct: 137 VGIKQIYY----DKPYKIENISDMLHKTGVKLIQVHVENIRIIN 176


>gi|283796591|ref|ZP_06345744.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Clostridium sp.
           M62/1]
 gi|291076004|gb|EFE13368.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Clostridium sp.
           M62/1]
          Length = 275

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 84/248 (33%), Gaps = 39/248 (15%)

Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS---VPITGFISKNQVHLLRAQ 189
           + +         +  +R +    I  + D  I     G      ++G  ++     +R +
Sbjct: 23  QKEKGNCLIQKEERMERPYTICHILSALDGKITGPFMGMPEVSAVSGEYAR-----IRDE 77

Query: 190 S--DAILVGIGTVL--ADD--PELTCRLNGLQEHSPM--------RIILDPHFKLSLDSK 235
              DA L G  T     D   P L      + E   +         + +D   +++  S 
Sbjct: 78  YHADAWLYGTKTTKEFTDFQKPVLDEGKTDVPEGDFIAGAHESLYYVSIDTLGEIAWSSG 137

Query: 236 IIKTALL--APVI-IVTENDDPVLALAFRKKNINIIYCDCRDL--KKLLTILVGR-GVTS 289
             + +    A VI ++TE          R++ I+ I     +L  +  +  L    G+ +
Sbjct: 138 TFRKSGRPDAHVIEVLTEQTPTAYRGYLRRQGISYIIAGKEELDCRTAVKKLYEFFGIKT 197

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP--------SPLEEGYLEKNFMCV 341
           +L+ GG  +  +F+   +VD   L  + +     G P        +P     +   F   
Sbjct: 198 MLICGGGMINWTFLQQGVVDEFSLLLAPV---ADGSPDTVSVFEQAPALSESVPVGFRLK 254

Query: 342 RRDYFGSD 349
           + +    D
Sbjct: 255 KAEVLRGD 262


>gi|264680472|ref|YP_003280382.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
           CNB-2]
 gi|262210988|gb|ACY35086.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
           CNB-2]
          Length = 166

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 55/166 (33%), Gaps = 31/166 (18%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRG--VTAYGG--CPHAE 56
            ++  D R++  A+  +         N     LIV  DG V+ R        G    HAE
Sbjct: 8   TLNDSDGRYLREAIALADTARER--GNRPFGALIVAADGRVLARASNANGESGDCTAHAE 65

Query: 57  VQALEEAGE-EARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC-------- 103
           + A+  A    +RG    AT Y + EPC        CA  I    I RVV          
Sbjct: 66  LSAIRLASPLHSRGELAVATLYSSAEPC------VMCAGAIFWSAIGRVVYGIDAERLRV 119

Query: 104 -----VDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
                +D  D  +S R +   +   I        E     H    +
Sbjct: 120 FRGERIDQKDAELSCRDVFQTASHAIECIGPALIEEASSSHQGAWK 165


>gi|238859561|ref|NP_001013904.2| deoxycytidylate deaminase isoform 1 [Rattus norvegicus]
 gi|149021459|gb|EDL78922.1| similar to 6030466N05Rik protein, isoform CRA_a [Rattus norvegicus]
 gi|149021460|gb|EDL78923.1| similar to 6030466N05Rik protein, isoform CRA_a [Rattus norvegicus]
          Length = 184

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 35/146 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        +  V   IV  +  ++G G                  
Sbjct: 20  EWPEYFMAVAFLSAQRSK---DPSSQVGACIVNTENKIVGIGYNGMPNGCSDDLLPWRRT 76

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G + YV L PC+       CA+ II+ GI+ 
Sbjct: 77  AENKLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNE------CAKLIIQAGIKE 130

Query: 100 VVVCVDDPDVRVSGRGLQWL-SQKGI 124
           V+   D           + L    G+
Sbjct: 131 VIFMSDKYHDSEETTAARLLFKLAGV 156


>gi|238859570|ref|NP_848903.2| deoxycytidylate deaminase [Mus musculus]
 gi|238859573|ref|NP_001154987.1| deoxycytidylate deaminase [Mus musculus]
 gi|238859575|ref|NP_001154988.1| deoxycytidylate deaminase [Mus musculus]
 gi|148703670|gb|EDL35617.1| dCMP deaminase, isoform CRA_a [Mus musculus]
 gi|148703671|gb|EDL35618.1| dCMP deaminase, isoform CRA_a [Mus musculus]
          Length = 184

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 35/146 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        +  V   IV  +  ++G G                  
Sbjct: 20  EWPEYFMAVAFLSAQRSK---DPSSQVGACIVNTENKIVGIGYNGMPNGCSDDLLPWRRT 76

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G + YV L PC+       CA+ II+ GI+ 
Sbjct: 77  AENKLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNE------CAKLIIQAGIKE 130

Query: 100 VVVCVDDPDVRVSGRGLQWL-SQKGI 124
           V+   D           + L    G+
Sbjct: 131 VIFMSDKYHDSEETTAARLLFKLAGV 156


>gi|20093324|ref|NP_619399.1| hypothetical protein MA4540 [Methanosarcina acetivorans C2A]
 gi|19918684|gb|AAM07879.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 198

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 71/211 (33%), Gaps = 35/211 (16%)

Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
             E    I L IA S D  I   G     +T + + ++              IGTVL   
Sbjct: 1   MKENNPRIKLYIACSLDGFIARKGGSVDWLTEYENSSETDY---GYSEFYASIGTVL--- 54

Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
                 +           +LD           +         + T   +P+     R+KN
Sbjct: 55  ------IGRKTYEQ----VLDFG---------VWPYGEKKTYVFTRQKEPLR----REKN 91

Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           +  +  +  +  + L       +    + GG+ +   F+   LV  +I++   +++G  G
Sbjct: 92  VEFVSGNVGEFVRRLKENTDENI---WLVGGSQLIRVFLEEDLVQDMIVFVVPVILGS-G 147

Query: 325 IPSPLEEGYLEKNFMCVRRDYFGSD-VCLEY 354
           IP   +    E     +  + + S  V LEY
Sbjct: 148 IP-LFDRIGKEVRLRMIDTERYESGLVKLEY 177


>gi|62286456|sp|Q5M9G0|DCTD_RAT RecName: Full=Deoxycytidylate deaminase; AltName: Full=dCMP
           deaminase
 gi|62286567|sp|Q8K2D6|DCTD_MOUSE RecName: Full=Deoxycytidylate deaminase; AltName: Full=dCMP
           deaminase
 gi|21619349|gb|AAH31719.1| Dctd protein [Mus musculus]
 gi|26327497|dbj|BAC27492.1| unnamed protein product [Mus musculus]
 gi|26333023|dbj|BAC30229.1| unnamed protein product [Mus musculus]
 gi|56540886|gb|AAH87138.1| DCMP deaminase [Rattus norvegicus]
          Length = 178

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 35/146 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        +  V   IV  +  ++G G                  
Sbjct: 14  EWPEYFMAVAFLSAQRSK---DPSSQVGACIVNTENKIVGIGYNGMPNGCSDDLLPWRRT 70

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G + YV L PC+       CA+ II+ GI+ 
Sbjct: 71  AENKLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNE------CAKLIIQAGIKE 124

Query: 100 VVVCVDDPDVRVSGRGLQWL-SQKGI 124
           V+   D           + L    G+
Sbjct: 125 VIFMSDKYHDSEETTAARLLFKLAGV 150


>gi|260892001|ref|YP_003238098.1| CMP/dCMP deaminase zinc-binding protein [Ammonifex degensii KC4]
 gi|260864142|gb|ACX51248.1| CMP/dCMP deaminase zinc-binding protein [Ammonifex degensii KC4]
          Length = 162

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 47/150 (31%), Gaps = 43/150 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
            +D  FM+ A   S     L      V   + +D  ++  G                   
Sbjct: 4   DWDTYFMTVAKVVSLRSTCLRR---QVGACLTRDNRILATGYNGAPSGLKHCLEIGCLRE 60

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  AL +A   G    GAT Y T  PC+       CA+ +I+
Sbjct: 61  EKGIPSGERHELCRGLHAEQNALLQAAVYGVSIAGATLYTTHFPCA------LCAKMLIQ 114

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
             I RVV     PD        +   + G+
Sbjct: 115 ARIERVVYLEFYPDPFAE----ELFREAGV 140


>gi|302419813|ref|XP_003007737.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261353388|gb|EEY15816.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 405

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
           FM  AL  +R  +  T+  P V C+IV +  VI +G+ A      G  HAE  A+
Sbjct: 59  FMDQALDMARLAL-RTNETP-VGCVIVHNNKVIAKGMNATNVTRNGTRHAEFMAV 111


>gi|226363496|ref|YP_002781278.1| tRNA-specific adenosine deaminase [Rhodococcus opacus B4]
 gi|226241985|dbj|BAH52333.1| putative tRNA-specific adenosine deaminase [Rhodococcus opacus B4]
          Length = 152

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 22/129 (17%)

Query: 30  SVACLIVK-DGIVIGRGVTAYGG----CPHAEVQALEEA------GEEARGATAYVTLEP 78
            V  ++   DG+ + R V +         HAE+ AL  A      G    GAT  VTLEP
Sbjct: 26  PVGAVVFDADGVEVSRAVNSREAMADPTAHAEIIALRAAARVYGDGWRLEGATLAVTLEP 85

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESE 133
           C        CA  ++   I RVV    +P     G     +  + +     +   ++E E
Sbjct: 86  C------TMCAGALVLARISRVVFGAWEPKTGAVGSLWDVVRDRRLTHRPQVRGGVLEDE 139

Query: 134 GKIFLHAYL 142
               L  + 
Sbjct: 140 CAGILEDFF 148


>gi|324998977|ref|ZP_08120089.1| cytidine/deoxycytidylate deaminase [Pseudonocardia sp. P1]
          Length = 157

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 54/157 (34%), Gaps = 23/157 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG----CPHAEVQA 59
           + D R +  AL  +R      S +  +  +++  DG  +     A         HAEV A
Sbjct: 4   AADDRALGRALEVARGAA--ASDDVPIGAVVLDADGTELAAACNAREALGDPTAHAEVLA 61

Query: 60  LEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           L  A          G T  VT+EPC        CA  I    + RVV    +P    +G 
Sbjct: 62  LRAAARVVGSWRLTGTTLAVTVEPC------TMCAGAIGLARVERVVFGAWEPKTGAAGS 115

Query: 115 GLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQV 146
               L  + +     +V  +   E    L  +  R  
Sbjct: 116 LWDVLRDRRLSHRPEVVGGVRAGEAAALLQEFFGRPP 152


>gi|22537844|ref|NP_688695.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           agalactiae 2603V/R]
 gi|25011789|ref|NP_736184.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           agalactiae NEM316]
 gi|76788185|ref|YP_330315.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           agalactiae A909]
 gi|77406599|ref|ZP_00783646.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           agalactiae H36B]
 gi|77409272|ref|ZP_00785978.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           agalactiae COH1]
 gi|77412446|ref|ZP_00788751.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           agalactiae CJB111]
 gi|77413936|ref|ZP_00790111.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           agalactiae 515]
 gi|22534739|gb|AAN00568.1|AE014269_12 cytidine/deoxycytidylate deaminase family protein [Streptococcus
           agalactiae 2603V/R]
 gi|24413330|emb|CAD47409.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563242|gb|ABA45826.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           agalactiae A909]
 gi|77160021|gb|EAO71157.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           agalactiae 515]
 gi|77161510|gb|EAO72516.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           agalactiae CJB111]
 gi|77172104|gb|EAO75267.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           agalactiae COH1]
 gi|77174792|gb|EAO77614.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           agalactiae H36B]
 gi|319745690|gb|EFV97989.1| cytidine/deoxycytidylate deaminase [Streptococcus agalactiae ATCC
           13813]
          Length = 150

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 56/161 (34%), Gaps = 34/161 (21%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M   S++  FM+ A   S+     T     V  ++VK+  +I  G               
Sbjct: 1   MNRLSWEDYFMANAELISKRS---TCDRAFVGAVLVKNNRIIATGYNGGVSETDNCNEVG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G        YVT  PC +      C + +++ G++
Sbjct: 58  HYMEDGHCIRTVHAEMNALIQCAKEGISTNNTEIYVTHFPCIN------CTKALLQAGVK 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
           ++       + R     ++ +  KG+   +    E  + + 
Sbjct: 112 KITY---KANYRPHPFAIELMEAKGVAYVQHDVPEVTLGME 149


>gi|53713372|ref|YP_099364.1| putative 5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Bacteroides fragilis YCH46]
 gi|52216237|dbj|BAD48830.1| putative 5-amino-6-(5-phosphoribosylamino) uracil reductase
           [Bacteroides fragilis YCH46]
          Length = 225

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 7/114 (6%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVI-IVTENDDPVLALAFRKKNINIIYCDCR--DLKKL 278
           II+D + KL         A   P++ IV+E          R   I+ I       DL   
Sbjct: 84  IIVDTYGKLRWQE---GEADGYPLLCIVSERVSEEYLETLRTLGISWIAAGAERIDLPGA 140

Query: 279 LTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           + +L    GV  L + GG  +   F+ + L+D + +  +  + G  G  +  + 
Sbjct: 141 MELLHEHFGVERLAIVGGGHICGGFLEAGLIDEVSIMVAPGIDGRKGQTAVFDG 194


>gi|293115762|ref|ZP_05792940.2| guanine deaminase [Butyrivibrio crossotus DSM 2876]
 gi|292808437|gb|EFF67642.1| guanine deaminase [Butyrivibrio crossotus DSM 2876]
          Length = 194

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 18/111 (16%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGR----GVTAYGGCPHAEVQALE 61
           D  ++  A+  SR        N    C++V  DG +I       +T      HAE   +E
Sbjct: 39  DEYYLEKAIEVSRKSR--AGGNTPFGCVLVDGDGEIILEQGNVEITEKRCTGHAETVIME 96

Query: 62  EAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
            A +          T Y T EPC      P CA  +    + +VV  + + 
Sbjct: 97  RASKLYDKKFLWNCTLYTTCEPC------PMCAGAVYWGNVGKVVYAMTEE 141


>gi|158522041|ref|YP_001529911.1| CMP/dCMP deaminase zinc-binding [Desulfococcus oleovorans Hxd3]
 gi|158510867|gb|ABW67834.1| CMP/dCMP deaminase zinc-binding [Desulfococcus oleovorans Hxd3]
          Length = 146

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 52/154 (33%), Gaps = 23/154 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGC----PHAEVQALEEAGE 65
           M  AL  +            V  ++V  DG V+               HAE+  +  A  
Sbjct: 1   MELALVEA--GKARDMDEVPVGAVLVSPDGKVLSADHNRPIAECDPSAHAEMLVIRRAAR 58

Query: 66  EARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           +A        T YVT+EPC        C   +I   I  VV  V DP    +G    +  
Sbjct: 59  QAANYRLPNTTLYVTVEPC------VMCMGAVIHARIGTVVFGVHDPKWGAAGSLYDFTK 112

Query: 121 QKGI-----IVDRMMESEGKIFLHAYLTRQVEKR 149
              +     +V  + E   +  L A+  ++  K 
Sbjct: 113 HSALNHSPAVVAGVCEDACRSILQAFFEQRRAKH 146


>gi|58336551|ref|YP_193136.1| dCMP deaminase [Lactobacillus acidophilus NCFM]
 gi|227903102|ref|ZP_04020907.1| competence protein ComEB [Lactobacillus acidophilus ATCC 4796]
 gi|58253868|gb|AAV42105.1| DCMP deaminase [Lactobacillus acidophilus NCFM]
 gi|227869088|gb|EEJ76509.1| competence protein ComEB [Lactobacillus acidophilus ATCC 4796]
          Length = 159

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 56/144 (38%), Gaps = 34/144 (23%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------------- 53
             FM  AL  ++      +    V  ++VKD  +IG G      G P             
Sbjct: 9   QYFMMQALVIAQRSTCNRA---LVGSVLVKDNRIIGTGYNGSVSGQPHCDEVGHQMVDGH 65

Query: 54  -----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                H+E+ A+ +    G    G   YVT  PC +      C + +++ GI+++    D
Sbjct: 66  CVRTIHSEMNAIIQCAKFGVSTDGTEIYVTHFPCYN------CCKSLLQAGIKKINYYFD 119

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRM 129
             D  ++   ++ L   G+  +++
Sbjct: 120 YRDNPLA---MKLLHDCGVPYEQI 140


>gi|239928210|ref|ZP_04685163.1| hypothetical protein SghaA1_08288 [Streptomyces ghanaensis ATCC
           14672]
          Length = 122

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 3/82 (3%)

Query: 246 IIVTENDDPVLALAFRKKNINIIYCD---CRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           I+      P    A  +    ++        D  +++  L   G T LL EGG  +    
Sbjct: 1   ILTGAGAAPDRVAAAERAGARVVTAGEGAGVDPARVVPALADLGHTRLLTEGGPRLLGQL 60

Query: 303 INSRLVDSIILYRSQIVIGEGG 324
           + +  +D + L  S ++     
Sbjct: 61  VAAGALDELCLTVSPMLTAGDA 82


>gi|290962921|ref|YP_003494103.1| guanine deaminase [Streptomyces scabiei 87.22]
 gi|260652447|emb|CBG75580.1| putative guanine deaminase [Streptomyces scabiei 87.22]
          Length = 226

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 50/146 (34%), Gaps = 34/146 (23%)

Query: 8   ARFMSAALRFSRWHVGLTSTNP--SVACLIV--KDGIVIGRGVTAYGGCP--HAEVQA-- 59
            RFM  A+  +R        NP      +IV  + G V G GV +    P  H E  A  
Sbjct: 66  ERFMRLAVEQARR-------NPAWPFGAVIVATRTGRVPGSGVNSGADSPLLHGEAVAMN 118

Query: 60  --LEEAGEEARGA-TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
             +   G     A T Y T EPCS       C   ++   +RRVV              +
Sbjct: 119 DYVRRHGNRGWAATTLYTTGEPCSM------CMSALVWANVRRVVWA----------GSI 162

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYL 142
             + + GI+   +   E       + 
Sbjct: 163 DEIRRTGIVQIALSAHEVAAAARTFY 188


>gi|296130628|ref|YP_003637878.1| Guanine deaminase [Cellulomonas flavigena DSM 20109]
 gi|296022443|gb|ADG75679.1| Guanine deaminase [Cellulomonas flavigena DSM 20109]
          Length = 186

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 43/116 (37%), Gaps = 25/116 (21%)

Query: 7   DARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           DAR+++ A+  +        G          ++V DG+ +  G            HAEVQ
Sbjct: 33  DARWLARAVELATANVHDGGG------PFGAVVVADGVEVAVGQNRVTRDLDPTAHAEVQ 86

Query: 59  ALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           A+  A   A      G T Y + EPC      P C    +   + RVV   D  D 
Sbjct: 87  AIRAACRAADTFALDGMTLYTSCEPC------PLCLAACLWARLDRVVFSADRHDA 136


>gi|206578758|ref|YP_002237260.1| cytidine/deoxycytidylate deaminase family protein [Klebsiella
           pneumoniae 342]
 gi|206567816|gb|ACI09592.1| cytidine/deoxycytidylate deaminase family protein [Klebsiella
           pneumoniae 342]
          Length = 152

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 17/113 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG---VTA-YGGCPHAEVQAL 60
           S D R++  AL  +  ++           ++V+   ++               HAE+ A+
Sbjct: 2   SADDRYLQRALALANQNIADGGR--PFGAVLVRHDEIVAEAVNTFHLNGDPTAHAELNAV 59

Query: 61  EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            +       E  R    Y + +PC      P C   +   G+R V     + D
Sbjct: 60  RDLAARLGSEVLRECVIYASGQPC------PMCLSALYLTGVREVFFANSNQD 106


>gi|291287820|ref|YP_003504636.1| CMP/dCMP deaminase zinc-binding protein [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290884980|gb|ADD68680.1| CMP/dCMP deaminase zinc-binding protein [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 151

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 36/109 (33%)

Query: 31  VACLIVKDGIVIGRGV---------------------------TAYGGCPHAEVQALEEA 63
           V  LIVK+  ++  G                                   HAE  A+ +A
Sbjct: 27  VGALIVKNRHILATGYNGVPSGIRHCEETGCLREQLKIPSGQRHEICRGLHAEQNAIIQA 86

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
              G    GA  Y   +PCS       CA+ I   GI +VV  +D  D 
Sbjct: 87  AYHGISINGAVLYCNTKPCSI------CAKMICNSGIIKVVYELDYSDP 129


>gi|299531573|ref|ZP_07044979.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
           S44]
 gi|298720536|gb|EFI61487.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
           S44]
          Length = 162

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 16/118 (13%)

Query: 1   MPVSSFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
           M   +   +++  ++R +     G          ++V+DG V+ R V           HA
Sbjct: 1   MNNENDSGKYLLESIRLAMGNVKGRQQPTWPFGAVLVRDGQVLARAVNQVDELCDPSAHA 60

Query: 56  EVQALE-----EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           E+QAL      +   +  GA  Y +  PCS       C   ++  G+++V     + D
Sbjct: 61  EMQALRIGAKAQGSTDLSGAVMYASGYPCSM------CYTAMLLAGVKQVYFAYSNED 112


>gi|269955016|ref|YP_003324805.1| CMP/dCMP deaminase zinc-binding protein [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269303697|gb|ACZ29247.1| CMP/dCMP deaminase zinc-binding protein [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 190

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 44/122 (36%), Gaps = 20/122 (16%)

Query: 38  DGIVIGRGVTAY----GGCPHAEVQALEEAG-----EEARGATAYVTLEPCSHYGRSPPC 88
           DG ++G G            HAEV AL +A          G T  VTLEPC        C
Sbjct: 71  DGRLLGTGRNRREETGDPTAHAEVLALRQAALSRREWRLEGCTLVVTLEPC------VMC 124

Query: 89  AQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLT 143
           A  ++   + R+V+   DP    +G     +          +V  + E E    L A+  
Sbjct: 125 AGALVAARVHRLVIGAWDPKAGATGSVWDLVRDQRANHAVEVVGGVREHECGAMLRAFFE 184

Query: 144 RQ 145
             
Sbjct: 185 SH 186


>gi|182415443|ref|YP_001820509.1| CMP/dCMP deaminase zinc-binding [Opitutus terrae PB90-1]
 gi|177842657|gb|ACB76909.1| CMP/dCMP deaminase zinc-binding [Opitutus terrae PB90-1]
          Length = 150

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 53/150 (35%), Gaps = 40/150 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNP---SVACLIVKDG----IVIGRGVT---------- 47
           S+D  FM+ A+  S      T +N     V C++V  G     ++  G            
Sbjct: 16  SWDEYFMATAVLLS------TRSNCERLHVGCVVVTGGDRKNRIVAAGYNGFLPGAAHTS 69

Query: 48  -----AYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                      HAE  A+ +A   G    G  AYVT  PC +      C + +   GI  
Sbjct: 70  RLRDGREQATVHAEQNAIADAARRGSSVEGCVAYVTHYPCIN------CIKILAAAGIAE 123

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           V    D  +  +       ++  GI + ++
Sbjct: 124 VRYRRDYNNDPL---VADLVADAGIKIVQL 150


>gi|170761087|ref|YP_001786677.1| guanine deaminase [Clostridium botulinum A3 str. Loch Maree]
 gi|169408076|gb|ACA56487.1| guanine deaminase [Clostridium botulinum A3 str. Loch Maree]
          Length = 157

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 31/90 (34%), Gaps = 15/90 (16%)

Query: 30  SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
                IVKDG VI        G      H EV  + +A +     +  G   Y T EPC 
Sbjct: 25  PFGSAIVKDGEVIAVAHNTVIGDNDPTAHGEVNVIRKACKKLNTFDLSGCELYTTSEPC- 83

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
                P C   II   I +V       D R
Sbjct: 84  -----PMCMSAIIWANISKVYYGCTVEDAR 108


>gi|148379269|ref|YP_001253810.1| guanine deaminase [Clostridium botulinum A str. ATCC 3502]
 gi|153931455|ref|YP_001383643.1| guanine deaminase [Clostridium botulinum A str. ATCC 19397]
 gi|153935940|ref|YP_001387192.1| guanine deaminase [Clostridium botulinum A str. Hall]
 gi|148288753|emb|CAL82837.1| guanine deaminase [Clostridium botulinum A str. ATCC 3502]
 gi|152927499|gb|ABS32999.1| guanine deaminase [Clostridium botulinum A str. ATCC 19397]
 gi|152931854|gb|ABS37353.1| guanine deaminase [Clostridium botulinum A str. Hall]
          Length = 157

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 31/90 (34%), Gaps = 15/90 (16%)

Query: 30  SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
                IVKDG VI        G      H EV  + +A +     +  G   Y T EPC 
Sbjct: 25  PFGSAIVKDGEVIAVAHNTVIGDNDPTAHGEVNVIRKACKKLNTFDLSGCELYTTSEPC- 83

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
                P C   II   I +V       D R
Sbjct: 84  -----PMCMSAIIWANISKVYYGCTVEDAR 108


>gi|116669457|ref|YP_830390.1| cytosine deaminase [Arthrobacter sp. FB24]
 gi|116609566|gb|ABK02290.1| Cytosine deaminase [Arthrobacter sp. FB24]
          Length = 176

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 16/126 (12%)

Query: 30  SVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAG--EEARGATAYVTLEPCSHYG 83
            +   + +   +I  G       G P  H E+ AL  AG  +  R  T Y TL PC+   
Sbjct: 43  PIGAALARGNELIASGHNERVQHGDPIAHGEMAALRAAGRQKSYRDTTLYTTLAPCAMCT 102

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT 143
            +      II+  I RVVV     + R      + L  +G+ V  + +      +  +  
Sbjct: 103 GT------IIQFKIPRVVVG----EARTFPGEFELLRSRGVEVLVLDDQRCVDMMLTFQR 152

Query: 144 RQVEKR 149
              E  
Sbjct: 153 DYPELW 158


>gi|307571064|emb|CAR84243.1| comEB [Listeria monocytogenes L99]
          Length = 176

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 31/141 (21%)

Query: 30  SVACLIVKDGIVIGRGVTA-YGGCP------------------HAEVQALEEA---GEEA 67
            V   IV+D  +I  G      G                    HAE+ A+ +    G   
Sbjct: 17  MVGATIVRDKRIIAGGYNGSIAGGDHCAEHGCYVVDGHCIRTIHAEMNAILQCAKFGATT 76

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
             A  YVT  PC        C + II+ GI++V    D  +   +   L+  +  G+ + 
Sbjct: 77  DKAELYVTHFPCL------ACTKSIIQAGIKKVYFAKDYKNHPYA---LELFNIAGVELQ 127

Query: 128 RMMESEGKIFLHAYLTRQVEK 148
           ++   E  + ++ +   ++  
Sbjct: 128 KVEFDESVLQVNNWNGEKMHT 148


>gi|258650784|ref|YP_003199940.1| CMP/dCMP deaminase zinc-binding [Nakamurella multipartita DSM
           44233]
 gi|258554009|gb|ACV76951.1| CMP/dCMP deaminase zinc-binding [Nakamurella multipartita DSM
           44233]
          Length = 159

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 63/164 (38%), Gaps = 23/164 (14%)

Query: 1   MPVS--SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPH 54
           MP +  + DA  +  AL  +R     T   P  A ++  DG+VIGRG  A         H
Sbjct: 1   MPGARDAADAELIRQALNLARRA-PDTGDLPIGALVLDPDGVVIGRGRNAREATGDPTAH 59

Query: 55  AEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AE+ AL +A          G T  VT+EPC        CA  ++   I  VV    +P  
Sbjct: 60  AEILALRQAAAARGQWNLTGCTLAVTVEPC------TMCAGAVVLARIETVVFGCWEPKT 113

Query: 110 RVSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEK 148
             +G     L  + +     +   ++E E    L  +     + 
Sbjct: 114 GAAGSLWDVLRDRRLTHRVQVRGGVLEQESAQLLRTFFADHRQP 157


>gi|283796628|ref|ZP_06345781.1| putative deoxycytidylate deaminase [Clostridium sp. M62/1]
 gi|291076051|gb|EFE13415.1| putative deoxycytidylate deaminase [Clostridium sp. M62/1]
 gi|295092489|emb|CBK78596.1| Deoxycytidylate deaminase [Clostridium cf. saccharolyticum K10]
 gi|295115332|emb|CBL36179.1| Deoxycytidylate deaminase [butyrate-producing bacterium SM4/1]
          Length = 176

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 51/150 (34%), Gaps = 37/150 (24%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG------------- 50
           ++D  FM  A + +   +     +  V   IV  D  ++  G   +              
Sbjct: 22  TWDEYFMGVA-KLA--AMRSKDPSTQVGACIVSSDNKILSMGYNGFPIGCSDDEFPWGKE 78

Query: 51  ------------GCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                          H+E+ A+    G    G+  YVTL PC+       CA+ II+ GI
Sbjct: 79  HETDDPYNAKYLYTTHSELNAILNYRGGSLEGSKLYVTLFPCNE------CAKAIIQAGI 132

Query: 98  RRVVVCVDDP-DVRVSGRGLQWLSQKGIIV 126
           R +V   D   D        + L   G+  
Sbjct: 133 RTLVYDSDKYQDTPSVRASKRMLDAAGVRY 162


>gi|28378749|ref|NP_785641.1| dCMP deaminase [Lactobacillus plantarum WCFS1]
 gi|254556952|ref|YP_003063369.1| dCMP deaminase [Lactobacillus plantarum JDM1]
 gi|300768267|ref|ZP_07078172.1| competence protein ComEB [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308180941|ref|YP_003925069.1| dCMP deaminase [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|28271586|emb|CAD64491.1| dCMP deaminase [Lactobacillus plantarum WCFS1]
 gi|254045879|gb|ACT62672.1| dCMP deaminase [Lactobacillus plantarum JDM1]
 gi|300494331|gb|EFK29494.1| competence protein ComEB [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308046432|gb|ADN98975.1| dCMP deaminase [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 162

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 31/140 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            +D  FM  A+  +      T    SV   IV+D  +I  G                   
Sbjct: 8   PWDQYFMMQAVLLASRS---TCERLSVGATIVRDKRIIAGGYNGSVSGDVHCIDEGCYLV 64

Query: 54  --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE+ A+ +    G    GA  YVT  PC        C + +++ GI+++  
Sbjct: 65  DGHCVRTIHAEMNAILQCAKFGAATDGAEIYVTDFPCLQ------CTKMLLQAGIQKIHY 118

Query: 103 CVDDPDVRVSGRGLQWLSQK 122
             +  +   +   ++     
Sbjct: 119 LRNYHNDAYAMSLIERKHVA 138


>gi|330934131|ref|XP_003304428.1| hypothetical protein PTT_17018 [Pyrenophora teres f. teres 0-1]
 gi|311318971|gb|EFQ87490.1| hypothetical protein PTT_17018 [Pyrenophora teres f. teres 0-1]
          Length = 286

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 42/128 (32%), Gaps = 42/128 (32%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPS---VACLIVKDGIVIGRGVTA---------YGGC 52
            +D  FM  A       +     N     V  +IV+D  +I  G             GGC
Sbjct: 106 DWDQYFMMIA------GLAAMRCNCMKRRVGAVIVRDRRIISTGYNGTSRRNTNCNQGGC 159

Query: 53  P----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                            HAE  AL EAG E    GAT Y    PC        CA  I +
Sbjct: 160 RRCNSGTSGSLSACICLHAEENALLEAGRERIGEGATLYCNTCPCL------TCATKITQ 213

Query: 95  CGIRRVVV 102
            GI  VV 
Sbjct: 214 VGITEVVY 221


>gi|300780042|ref|ZP_07089898.1| cytidine and deoxycytidylate deaminase [Corynebacterium genitalium
           ATCC 33030]
 gi|300534152|gb|EFK55211.1| cytidine and deoxycytidylate deaminase [Corynebacterium genitalium
           ATCC 33030]
          Length = 151

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 54/156 (34%), Gaps = 28/156 (17%)

Query: 11  MSAALRFSRWHVGLTST--NPSVACLIV-KDGIVIGRGV----TAYGGCPHAEVQALEEA 63
           M  A+  +R     T+   +  V  ++   DG  I  G     T      HAEV    +A
Sbjct: 1   MRRAIEVAR-----TTPIGDIPVGAVLYGPDGEEIATGTNRRETDRDPVGHAEVVVTRKA 55

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            +        G    VTLEPC        CA  I+   ++ +V    +P     G  +  
Sbjct: 56  AQALGTWRLDGCELVVTLEPC------TMCAGAILGARVQSLVFGAYEPKTGAVGSLIDV 109

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           L          +   ++E+E    +  +  R+V   
Sbjct: 110 LRDPPHLHTVEVRGGVLETETASLMRDFFAREVRGH 145


>gi|15838349|ref|NP_299037.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Xylella
           fastidiosa 9a5c]
 gi|9106818|gb|AAF84557.1|AE003997_13 5-amino-6-(5-phosphoribosylamino)uracil reductase [Xylella
           fastidiosa 9a5c]
          Length = 237

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 5/102 (4%)

Query: 221 RIILDPHFKLSLDSKIIK-TALLAPVI-IVTENDDPVLALAFRKKNINIIYC--DCRDLK 276
            + +D   +L     ++   +  + VI ++TE          R+  I+ I    D  D  
Sbjct: 91  YVAIDASGRLGWQENVVDYGSRQSHVISVLTEQASNAYKDLLRRLGISYIVAGKDRLDNA 150

Query: 277 KLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
             L  L    G+  +++ GG  +  S++   LVD + L  + 
Sbjct: 151 LALHKLATLFGMERVMIGGGGVLNWSYLQDGLVDELSLLMAP 192


>gi|120406536|ref|YP_956365.1| CMP/dCMP deaminase [Mycobacterium vanbaalenii PYR-1]
 gi|119959354|gb|ABM16359.1| tRNA-adenosine deaminase [Mycobacterium vanbaalenii PYR-1]
          Length = 166

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 22/129 (17%)

Query: 30  SVACLI-VKDGIVIGRGVTAY--GGCP--HAEVQALEEA------GEEARGATAYVTLEP 78
            +  ++   DG  + R   A    G P  HAE+ AL  A      G    GAT  VT+EP
Sbjct: 40  PIGAVVFAPDGRELARAANAREEFGDPTAHAEILALRAAARELGDGWRLEGATLAVTVEP 99

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESE 133
           C        CA  ++   + RVV    +P     G     +  + +     +   ++E+E
Sbjct: 100 C------TMCAGALVMARVARVVFGAWEPKTGAVGSLWDVVRDRRLTHRPQVRGGVLEAE 153

Query: 134 GKIFLHAYL 142
               L  + 
Sbjct: 154 CAAPLEEFF 162


>gi|42561111|ref|NP_975562.1| dCMP deaminase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|42492608|emb|CAE77204.1| dCMP deaminase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|256384072|gb|ACU78642.1| deoxycytidylate deaminase [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|256384904|gb|ACU79473.1| deoxycytidylate deaminase [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|296455570|gb|ADH21805.1| deoxycytidylate deaminase (dCMP deaminase) [synthetic Mycoplasma
           mycoides JCVI-syn1.0]
 gi|301320471|gb|ADK69114.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale]
          Length = 160

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 50/151 (33%), Gaps = 34/151 (22%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT------------------- 47
             FM  A   +         N  V  ++V +   ++  G                     
Sbjct: 12  HYFMLIAKASAMRSK---DPNTQVGAIVVNELQQIVATGYNGFPRGVSDDEFPWSKNNED 68

Query: 48  ----AYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                Y    HAE+ A+  +  +      YVTL PC+       CA+ II+ GI+R+   
Sbjct: 69  WLENKYAYVAHAELNAIVSSRSDLSNCDLYVTLFPCNE------CAKIIIQAGIKRIYYA 122

Query: 104 VD-DPDVRVSGRGLQWLSQKGIIVDRMMESE 133
            D   D +      + L    I   ++ + E
Sbjct: 123 NDPYHDKKEFIASKKMLDAVNIKYIKLPDIE 153


>gi|299534874|ref|ZP_07048203.1| hypothetical protein BFZC1_02552 [Lysinibacillus fusiformis ZC1]
 gi|298729719|gb|EFI70265.1| hypothetical protein BFZC1_02552 [Lysinibacillus fusiformis ZC1]
          Length = 176

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
             L  +  T + + GG  +  +F+  RL+D  I+  +  ++G  GIP        E N  
Sbjct: 98  QRLKEQEGTKIWMVGGGELLDAFLQERLIDEWIITITPHLLGS-GIPLFKSPRPFE-NLR 155

Query: 340 CVRRDYFGSDVCLEYIGK 357
            +    +G  V L Y  K
Sbjct: 156 LLETKRYGQMVQLHYEVK 173


>gi|258623229|ref|ZP_05718238.1| deoxycytidylate deaminase, putative [Vibrio mimicus VM573]
 gi|258627669|ref|ZP_05722443.1| deoxycytidylate deaminase, putative [Vibrio mimicus VM603]
 gi|262173485|ref|ZP_06041162.1| deoxycytidylate deaminase [Vibrio mimicus MB-451]
 gi|262403414|ref|ZP_06079972.1| deoxycytidylate deaminase [Vibrio sp. RC586]
 gi|258580040|gb|EEW05015.1| deoxycytidylate deaminase, putative [Vibrio mimicus VM603]
 gi|258584527|gb|EEW09267.1| deoxycytidylate deaminase, putative [Vibrio mimicus VM573]
 gi|261890843|gb|EEY36830.1| deoxycytidylate deaminase [Vibrio mimicus MB-451]
 gi|262349918|gb|EEY99053.1| deoxycytidylate deaminase [Vibrio sp. RC586]
          Length = 160

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 49/155 (31%), Gaps = 35/155 (22%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPS--VACLIVKDGIVIGRGVTAYGG-------------- 51
            RF   A       VG  S +PS  V  +I K   ++  G   Y                
Sbjct: 7   QRFFQMA-EL----VGSWSKDPSTQVGAVITKQNRIVSVGFNGYPHGISDSASTDDRDMK 61

Query: 52  ---CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                HAE  A+  A  +  G   YVT  PC      P CA  II+ GI  V       D
Sbjct: 62  YLKTLHAEENAILFAKRDLDGCEIYVTHFPC------PNCAAKIIQTGIAAVYCPEQSDD 115

Query: 109 VRVS-----GRGLQWLSQKGIIVDRMMESEGKIFL 138
                            Q G+ V+ +  +E K   
Sbjct: 116 FLSRWGDKIKVSQDMFLQAGVKVNWLPLAELKHIN 150


>gi|59714100|ref|YP_206875.1| deoxycytidylate deaminase [Vibrio fischeri ES114]
 gi|197337866|ref|YP_002158583.1| RibG [Vibrio fischeri MJ11]
 gi|59482348|gb|AAW87987.1| deoxycytidylate deaminase [Vibrio fischeri ES114]
 gi|197315118|gb|ACH64567.1| RibG [Vibrio fischeri MJ11]
          Length = 147

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 38/121 (31%), Gaps = 28/121 (23%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP-----------------HAEVQALEEAGEEARGATAY 73
           V  +I K   ++  G   Y                     HAE  A+  A  +  G   +
Sbjct: 27  VGAVITKHNRIVSVGFNGYPHGVSDSADTDEREIKYLKTLHAEENAILFAKRDLEGCDIW 86

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD-----VRVSGRGLQWLSQKGIIVDR 128
           VT  PC      P CA  II+ GI +V       D                SQ G+ V  
Sbjct: 87  VTHFPC------PNCAAKIIQTGISKVYCPEQTEDFLSRWGEKIQVSQDMFSQAGVEVTW 140

Query: 129 M 129
           +
Sbjct: 141 L 141


>gi|5726586|gb|AAD48481.1|AF170104_9 unknown [Aliivibrio fischeri]
          Length = 124

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 38/121 (31%), Gaps = 28/121 (23%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP-----------------HAEVQALEEAGEEARGATAY 73
           V  +I K   ++  G   Y                     HAE  A+  A  +  G   +
Sbjct: 4   VGAVITKHNRIVSVGFNGYPHGVSDSADTDEREIKYLKTLHAEENAILFAKRDLEGCDIW 63

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD-----VRVSGRGLQWLSQKGIIVDR 128
           VT  PC      P CA  II+ GI +V       D                SQ G+ V  
Sbjct: 64  VTHFPC------PNCAAKIIQTGISKVYCPEQTEDFLSRWGEKIQVSQDMFSQAGVEVTW 117

Query: 129 M 129
           +
Sbjct: 118 L 118


>gi|465877|sp|P33968|YLXG_VIBFI RecName: Full=Uncharacterized deaminase in luxG 3'region
 gi|396216|emb|CAA49769.1| unnamed protein product [Aliivibrio fischeri]
 gi|119116595|dbj|BAF40863.1| putative deoxycytidylate deaminase [Vibrio fischeri]
          Length = 147

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 38/121 (31%), Gaps = 28/121 (23%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP-----------------HAEVQALEEAGEEARGATAY 73
           V  +I K   ++  G   Y                     HAE  A+  A  +  G   +
Sbjct: 27  VGAVITKHNRIVSVGFNGYPHGVSDSADTDEREIKYLKTLHAEENAILFAKRDLEGCDIW 86

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD-----VRVSGRGLQWLSQKGIIVDR 128
           VT  PC      P CA  II+ GI +V       D                SQ G+ V  
Sbjct: 87  VTHFPC------PNCAAKIIQTGISKVYCPEQTEDFLSRWGEKIQVSQDMFSQAGVEVTW 140

Query: 129 M 129
           +
Sbjct: 141 L 141


>gi|301163169|emb|CBW22719.1| putative RibD-family protein [Bacteroides fragilis 638R]
          Length = 225

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 7/114 (6%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVI-IVTENDDPVLALAFRKKNINIIY--CDCRDLKKL 278
           II+D + KL         A   P++ IV+E              I+ I    +  DL + 
Sbjct: 84  IIVDTYGKLRWQE---GEADGHPLLCIVSEQVSEKYLETLCTLGISWIATGAERIDLPQA 140

Query: 279 LTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           + +L    GV  L + GG  +   F+ + L+D + +  +  + G  G  +  + 
Sbjct: 141 MELLHEHFGVERLAIVGGGHICGGFLEAGLIDEVSIMVAPGIDGRKGQTAVFDG 194


>gi|68304978|gb|AAY89989.1| unknown [uncultured bacterium BAC13K9BAC]
          Length = 157

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 17/92 (18%)

Query: 30  SVACLIVKDG--IVIGRGVTA----YGGCPHAEVQALEEA-----GEEARGATAYVTLEP 78
            V  +I+KD    VI  G            HAE+ AL+ A      E  +G +   TLEP
Sbjct: 26  PVGAVIIKDSTFEVISSGYNKMKQNRSSIDHAEMLALKTAMTRLNNERLKGCSMITTLEP 85

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           C      P CAQ I    +  ++   +D    
Sbjct: 86  C------PMCAQAISFARLSSIIFSAEDKKSG 111


>gi|73852493|ref|YP_293777.1| putative deoxycytidylate deaminase [Emiliania huxleyi virus 86]
 gi|72415209|emb|CAI65446.1| putative deoxycytidylate deaminase [Emiliania huxleyi virus 86]
          Length = 173

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 53/148 (35%), Gaps = 37/148 (25%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVA-CLI-VKDGIVIGRGV---------------- 46
           S+D  FM  A + S   +     +  V  C+I  K   +I  G                 
Sbjct: 19  SWDQYFMGVA-KLS--AMRSKDPSTQVGSCIIESKTNKIISIGYNGMPRGCNDDDFPWGK 75

Query: 47  ---------TAYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                    T Y    H+E  A+  A G    G T YVTL PC+       C + II+ G
Sbjct: 76  KEKNSNILDTKYPFVVHSEANAILNANGTSVNGCTMYVTLFPCNE------CTKLIIQSG 129

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           I  +V   D  D+      L+ L   G+
Sbjct: 130 ICEIVYLDDYNDITTKTASLRMLQSAGV 157


>gi|60681625|ref|YP_211769.1| putative RibD-family protein [Bacteroides fragilis NCTC 9343]
 gi|60493059|emb|CAH07840.1| putative RibD-family protein [Bacteroides fragilis NCTC 9343]
          Length = 225

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 7/114 (6%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVI-IVTENDDPVLALAFRKKNINIIYCDCR--DLKKL 278
           II+D + KL         A   P++ IV+E          R   I+ I       DL   
Sbjct: 84  IIVDTYGKLRWQE---GEADGYPLLCIVSERVSEEYLETLRTLGISWIAAGAERIDLPGA 140

Query: 279 LTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           + +L    GV  L + GG  +   F+ + L+D + +  +  + G  G  +  + 
Sbjct: 141 MELLHEHFGVERLAIVGGGHICGGFLEAGLIDEVSIMVAPGIDGRKGQTAVFDG 194


>gi|116491296|ref|YP_810840.1| cytosine/adenosine deaminase [Oenococcus oeni PSU-1]
 gi|290890847|ref|ZP_06553913.1| hypothetical protein AWRIB429_1303 [Oenococcus oeni AWRIB429]
 gi|116092021|gb|ABJ57175.1| Cytosine/adenosine deaminase [Oenococcus oeni PSU-1]
 gi|290479498|gb|EFD88156.1| hypothetical protein AWRIB429_1303 [Oenococcus oeni AWRIB429]
          Length = 148

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 16/102 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE- 65
           M  A+  +  ++ L    P    +IV+D  VI               HAE+ A+ +A + 
Sbjct: 1   MKLAIEQANENIVLKEGGP-FGAVIVRDQEVICAAHNMVLANLDPTAHAEIIAIRKACKV 59

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
               +    T Y +  PC      P C    I   I+ V   
Sbjct: 60  LATCDLSDCTLYTSAYPC------PMCLSATIWANIKEVRYG 95


>gi|195427655|ref|XP_002061892.1| GK17242 [Drosophila willistoni]
 gi|194157977|gb|EDW72878.1| GK17242 [Drosophila willistoni]
          Length = 203

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 49/162 (30%), Gaps = 34/162 (20%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT----------------- 47
           +D  FM+ AL  ++           V   IV K   ++  G                   
Sbjct: 49  WDDYFMAMALLSAKRSK---DPVTQVGACIVDKQNRIVAIGYNGFPRNCSDDVFPWTKNS 105

Query: 48  ------AYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                       HAE  A L        G   Y TL PC+       C + II+ GI+RV
Sbjct: 106 EDSMEDKKLYVVHAEANAILNSNSTSLVGTCLYTTLFPCNE------CTKLIIQSGIQRV 159

Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
           +   D    +   R  + +     I     E   K  +  + 
Sbjct: 160 LYISDKYAHKAKYRASRRMLDAARITYSHYEPTQKEIVINFN 201


>gi|256072191|ref|XP_002572420.1| deoxycytidylate deaminase [Schistosoma mansoni]
 gi|238657578|emb|CAZ28651.1| deoxycytidylate deaminase, putative [Schistosoma mansoni]
          Length = 175

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 55/149 (36%), Gaps = 34/149 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGC----------- 52
           S+D  FMS AL  +         +  V   IV ++  ++G G                  
Sbjct: 22  SWDEYFMSIALLSAMRSK---DPSTQVGACIVNQEKKIVGIGYNGMPNGILDDDVPWGKG 78

Query: 53  ------------PHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                        HAE+ A L      + G T + T+ PC+       CA+ II+ GI+ 
Sbjct: 79  SANELENKYLYVCHAELNAVLNRNEAHSGGCTLFTTMFPCNE------CAKVIIQAGIKE 132

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           VV   D  +   S +  ++L  K  +  R
Sbjct: 133 VVYYSDKKNGTESNQAAKYLFNKADVSIR 161


>gi|225451245|ref|XP_002276494.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|298204906|emb|CBI34213.3| unnamed protein product [Vitis vinifera]
          Length = 186

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 42/116 (36%), Gaps = 16/116 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
           V   D +F++AA+  +   V      P    ++V +  V+        T      HAEV 
Sbjct: 27  VQDRDYKFLTAAVEEAYKGVECGDGGP-FGAVVVHNDEVLVSCHNMVLTNTDPTAHAEVT 85

Query: 59  ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           A+ EA ++           Y + EPC      P C   I    I+R+V        
Sbjct: 86  AIREACKKLNQIELSDCEIYASCEPC------PMCFGAIHLSRIKRLVYGAKAEAA 135


>gi|75859026|ref|XP_868853.1| hypothetical protein AN9471.2 [Aspergillus nidulans FGSC A4]
 gi|40738399|gb|EAA57589.1| hypothetical protein AN9471.2 [Aspergillus nidulans FGSC A4]
 gi|259479858|tpe|CBF70466.1| TPA: DRAP deaminase, putative (AFU_orthologue; AFUA_2G13200)
           [Aspergillus nidulans FGSC A4]
          Length = 222

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 57/165 (34%), Gaps = 35/165 (21%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV--KDG-------IVIGRGVTAY-GGC 52
           + S   +++   L  +     L  TN  V  L+V  KDG        ++  G T    G 
Sbjct: 1   MRSPHLQYLQKCLSLAEQAPSL-PTNFRVGALLVSRKDGDLMTEHDELLSTGYTMELPGN 59

Query: 53  PHAEVQALEEAGEEA----------------RGATAYVTLEPCS-HYGRSPPCAQFIIEC 95
            HAE   L                       R    YVT+EPC      + PC Q II+ 
Sbjct: 60  THAEQCLLSNYASRHSVPEDRVSEVLPDTPGRKLVLYVTMEPCGKRLSGNLPCVQRIIQT 119

Query: 96  ------GIRRVVVCVDDPDVRVSGRG-LQWLSQKGIIVDRMMESE 133
                 GI +V   V +P   V      + L++ GI    +   E
Sbjct: 120 RKNGRRGIEKVYFGVKEPTTFVGESEGCKMLTEAGIQWRVVQGLE 164


>gi|319941045|ref|ZP_08015381.1| deoxycytidylate deaminase [Sutterella wadsworthensis 3_1_45B]
 gi|319805402|gb|EFW02204.1| deoxycytidylate deaminase [Sutterella wadsworthensis 3_1_45B]
          Length = 138

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 52/142 (36%), Gaps = 35/142 (24%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-------------------YG 50
           +M  A   +            V C+IVK+  +I  G                        
Sbjct: 10  YMRIAQIAAERSYAKRLK---VGCVIVKNHSIISFGWNGMPTGYDNCCEMEVDGKLVTRP 66

Query: 51  GCPHAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
              HAE+ A   L E G  ++ A  ++T  PC        CA  I +CGI +V       
Sbjct: 67  EVQHAELNAIAKLAENGYSSKDAAIFITHSPCID------CALLIQKCGISQVFY----H 116

Query: 108 DVRVSGRGLQWLSQKGIIVDRM 129
           ++  S  GL +L + GI V ++
Sbjct: 117 ELYRSREGLDFLERAGIKVTQL 138


>gi|227486316|ref|ZP_03916632.1| competence protein ComEB [Anaerococcus lactolyticus ATCC 51172]
 gi|227235727|gb|EEI85742.1| competence protein ComEB [Anaerococcus lactolyticus ATCC 51172]
          Length = 147

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 55/153 (35%), Gaps = 35/153 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV---------------TA 48
           ++D  FM  A   +      T     V C++V  +  ++  G                T 
Sbjct: 7   TWDEYFMRLAETVAMRG---TCDRAYVGCVLVNSENRIVSTGYNGSIKGNAHCDEIGHTM 63

Query: 49  YGG----CPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
             G      HAE+ AL    + G        YVT  PC +      C + +I+ GI+++ 
Sbjct: 64  RDGHCIATIHAEMNALLYCAKEGIAVNNCICYVTHFPCLN------CTKSLIQAGIKKIY 117

Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
                   RV    ++ L + GI   ++ E + 
Sbjct: 118 Y---RNAYRVDDYAVELLEKNGIEYIKIEEKDQ 147


>gi|18699612|gb|AAL78655.1|AF468456_1 competence protein [Listeria monocytogenes]
          Length = 176

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 31/141 (21%)

Query: 30  SVACLIVKDGIVIGRGVTA-YGGCP------------------HAEVQALEEA---GEEA 67
            V   IV+D  +I  G      G                    HAE+ A+ +    G   
Sbjct: 17  MVGATIVRDKRIIAGGYNGSIAGGDHCAEHGCYVVDGHCIRTIHAEMNAILQCAKFGATT 76

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
             A  YVT  PC        C + II+ GI++V    D  +   +   L+  +  G+ + 
Sbjct: 77  DKAELYVTHFPCL------ACTKSIIQAGIKKVYFAKDYKNHPYA---LELFNIAGVELQ 127

Query: 128 RMMESEGKIFLHAYLTRQVEK 148
           ++   E  + ++ +   ++  
Sbjct: 128 KVEFDESVLQVNNWNGEKMHT 148


>gi|78186601|ref|YP_374644.1| deoxycytidylate deaminase, putative [Chlorobium luteolum DSM 273]
 gi|78166503|gb|ABB23601.1| deoxycytidylate deaminase, putative [Chlorobium luteolum DSM 273]
          Length = 187

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 52/164 (31%), Gaps = 44/164 (26%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------------T 47
             FMS A   SR     T  +  +  +IV+D  ++  G                     T
Sbjct: 37  EYFMSVAHLISRRA-TCTRGH--IGAVIVRDHSILSTGYNGAPSGLPHCNETNCRIYRST 93

Query: 48  AYGGCP--------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
              G          HAE+ A+ +A   G     +  Y+T  PC H      C + +I  G
Sbjct: 94  HPDGTVEENCVNTIHAEINAIAQAAKHGVSISDSDIYITASPCIH------CLKVLINVG 147

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
           I+ +                + L   GI + ++   EG      
Sbjct: 148 IKTIYY----DKPYKIEHIAELLRLSGIRLVQVHVEEGDKGCTC 187


>gi|291326525|ref|ZP_06124898.2| tRNA-specific adenosine deaminase [Providencia rettgeri DSM 1131]
 gi|291314071|gb|EFE54524.1| tRNA-specific adenosine deaminase [Providencia rettgeri DSM 1131]
          Length = 169

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 11/96 (11%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
             D +FM+ AL  +       + N     ++VK+  V+  G     T      HAE+  +
Sbjct: 18  ELDIQFMTQALALATDAA--KNGNEPFGAVLVKNNQVVMTGENHIHTESDPTYHAELGLI 75

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQF 91
            +        +    T Y + EPC     +   +Q 
Sbjct: 76  RQYCSEHKVMDLSDYTLYTSCEPCCMCSGAMVWSQL 111


>gi|158522092|ref|YP_001529962.1| CMP/dCMP deaminase zinc-binding [Desulfococcus oleovorans Hxd3]
 gi|158510918|gb|ABW67885.1| CMP/dCMP deaminase zinc-binding [Desulfococcus oleovorans Hxd3]
          Length = 155

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 46/129 (35%), Gaps = 40/129 (31%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP---------------------------HAEVQALEEA 63
           V  +IVK+  ++  G                                   HAE  A+ +A
Sbjct: 36  VGAVIVKNKRMLATGYNGAPAGVTHCSETGCLRARLNVPSGERHELCRGIHAEQNAIIQA 95

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G   +GA+ Y T +PCS       CA+ II  GI  V       D       L+ L+
Sbjct: 96  AFHGVSIQGASLYCTNQPCSI------CAKMIINAGISAVYYKDGYDDPM----SLEMLA 145

Query: 121 QKGIIVDRM 129
           + G+ + R+
Sbjct: 146 EAGVELIRL 154


>gi|20806677|ref|NP_621848.1| deoxycytidylate deaminase [Thermoanaerobacter tengcongensis MB4]
 gi|20515128|gb|AAM23452.1| Deoxycytidylate deaminase [Thermoanaerobacter tengcongensis MB4]
          Length = 168

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 46/125 (36%), Gaps = 40/125 (32%)

Query: 31  VACLIVKDGIVIGRGVTAYG-GCP--------------------------HAEVQALEEA 63
           V  ++V D  +I  G      G P                          HAE  A+ +A
Sbjct: 48  VGAILVVDKHIISTGYNGPPTGLPHCEETGCLRDQLGIPPGERPELCRGVHAEQNAIIQA 107

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G   +GAT YV+  PC        CA+ +I  G++R+V   + PD        Q L 
Sbjct: 108 ALHGVSTKGATLYVSASPCVI------CAKMLINAGVKRIVYEEEYPD----ELAFQLLK 157

Query: 121 QKGII 125
           + GI 
Sbjct: 158 EAGIE 162


>gi|307108051|gb|EFN56292.1| hypothetical protein CHLNCDRAFT_144679 [Chlorella variabilis]
          Length = 250

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 46/133 (34%), Gaps = 21/133 (15%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
            +  D RFM AAL+ +   +G       V C++V+DG V+  G         G  HAE  
Sbjct: 7   WTPDDLRFMRAALQQAANALGENE--VPVGCVVVRDGAVVAAGSNKTNETRNGTRHAEFV 64

Query: 59  ALEE---------AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           A++          A         YVT EPC        CA  +       V     +   
Sbjct: 65  AVDALLQQAGGDAAAARFPECHLYVTCEPCIM------CAGALSLLRFASVTYGCPNDKF 118

Query: 110 RVSGRGLQWLSQK 122
             +G  L   +  
Sbjct: 119 GGNGSILSVHATA 131


>gi|224130724|ref|XP_002328360.1| predicted protein [Populus trichocarpa]
 gi|222838075|gb|EEE76440.1| predicted protein [Populus trichocarpa]
          Length = 184

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 18/110 (16%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-----AYGGCPHAEV 57
           V   D +F++ A+  +   V      P    ++V++  +I                HAEV
Sbjct: 25  VQDRDHKFLTRAVEEAYKGVECGDGGP-FGAVVVQNDEII-MSCHNMVLKNTDPTAHAEV 82

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
            A+ EA ++           Y + EPC      P C   I    ++R+V 
Sbjct: 83  TAVREACKKLNRIELSDCEIYASCEPC------PMCFGAIHLSRVKRLVY 126


>gi|310816563|ref|YP_003964527.1| cytidine and deoxycytidylate deaminase family protein
           [Ketogulonicigenium vulgare Y25]
 gi|308755298|gb|ADO43227.1| cytidine and deoxycytidylate deaminase family protein
           [Ketogulonicigenium vulgare Y25]
          Length = 150

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 44/122 (36%), Gaps = 18/122 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA----YGGCPHAEVQALEEA- 63
           +M  AL  ++           V  +++   G +I R        +    HAEV A+  A 
Sbjct: 6   YMIHALEEAKLAAMR--GEVPVGAVVIGPSGQIIARAGNRTRELHDPTAHAEVLAIRAAC 63

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                E       YVTLEPC      P CA  I    IRR+    +DP       G +  
Sbjct: 64  AVIGSERLIDHDLYVTLEPC------PICAGTIAAARIRRLYFGAEDPKSGGVLHGARVF 117

Query: 120 SQ 121
           + 
Sbjct: 118 NH 119


>gi|317969787|ref|ZP_07971177.1| tRNA-specific adenosine deaminase [Synechococcus sp. CB0205]
          Length = 182

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 60/151 (39%), Gaps = 25/151 (16%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGC----PHAEVQALEE 62
             +M   LR +   VG     P VA +++   G  +G GV           HAE+ ALE+
Sbjct: 19  ELWMRRLLRRAE-AVGEKGEIP-VAAVLLDGHGRALGWGVNRRQREQRPLGHAELMALEQ 76

Query: 63  AGEEARG------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           A    RG       +  VTLEPC      P CA  +++  + +V+    DP     G  L
Sbjct: 77  A-ARLRGDWRFNDCSLIVTLEPC------PMCAGALVQARMGQVIFGAHDPKRGALGGCL 129

Query: 117 QW-----LSQKGIIVDRMMESEGKIFLHAYL 142
                        ++  ++E E K  L A+ 
Sbjct: 130 NLATDPSAHHHMTVMGGVLELECKSRLEAWF 160


>gi|292572491|gb|ADE30406.1| Cytosine deaminase [Rickettsia prowazekii Rp22]
          Length = 163

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 43/125 (34%), Gaps = 21/125 (16%)

Query: 9   RFMSAALRFSRWHVGLTSTN-PSVACLIVK--DGIVIGRGVT----AYGGCPHAEVQALE 61
            FM  AL+ +R        N   V  +IV   +  +I               HAE+ A+ 
Sbjct: 14  FFMEQALKQARLAF---DKNEVPVGVVIVCRLNQKIIVSSHNNIEEKKNPLCHAEIIAIN 70

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A      +       YVTLEPC+       CA  I    ++R+     D         L
Sbjct: 71  TACNLISSKNLNDYDIYVTLEPCAM------CASAISHSRLKRLFYGASDSKHGAVESNL 124

Query: 117 QWLSQ 121
           ++ + 
Sbjct: 125 RYFNS 129


>gi|217964371|ref|YP_002350049.1| ComE operon protein 2 [Listeria monocytogenes HCC23]
 gi|217333641|gb|ACK39435.1| ComE operon protein 2 [Listeria monocytogenes HCC23]
          Length = 160

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 31/141 (21%)

Query: 30  SVACLIVKDGIVIGRGVTA-YGGCP------------------HAEVQALEEA---GEEA 67
            V   IV+D  +I  G      G                    HAE+ A+ +    G   
Sbjct: 1   MVGATIVRDKRIIAGGYNGSIAGGDHCAEHGCYVVDGHCIRTIHAEMNAILQCAKFGATT 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
             A  YVT  PC        C + II+ GI++V    D  +   +   L+  +  G+ + 
Sbjct: 61  DKAELYVTHFPCL------ACTKSIIQAGIKKVYFAKDYKNHPYA---LELFNIAGVELQ 111

Query: 128 RMMESEGKIFLHAYLTRQVEK 148
           ++   E  + ++ +   ++  
Sbjct: 112 KVEFDESVLQVNNWNGEKMHT 132


>gi|291521867|emb|CBK80160.1| Cytosine/adenosine deaminases [Coprococcus catus GD/7]
          Length = 175

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 17/113 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
           + DA FM  A+R S+  V     N     ++VK+G ++        T +    H E   +
Sbjct: 22  TEDASFMREAIRLSQLAV--EHGNEPFGAVLVKNGEIVFTNENQIYTRHDPTFHGEAGLI 79

Query: 61  EE-----AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            E     +  +    T Y + EPC        C+  ++   + R+V    + D
Sbjct: 80  REFCAKTSITDLHDYTLYSSCEPCFM------CSGAMVWVKLGRLVYGASNSD 126


>gi|149278879|ref|ZP_01885014.1| cytidine/deoxycytidylate deaminase family protein [Pedobacter sp.
           BAL39]
 gi|149230498|gb|EDM35882.1| cytidine/deoxycytidylate deaminase family protein [Pedobacter sp.
           BAL39]
          Length = 168

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 38/119 (31%), Gaps = 24/119 (20%)

Query: 8   ARFMSAALRFSRW----HVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQA 59
           A FM  A+  S        G           IVK+G +I +             HAEV A
Sbjct: 15  AAFMKIAIDASEENVISGKGT-----PFGAAIVKEGQLIAKSANKVTADNDPTAHAEVAA 69

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           +  A +     +  G   Y + EPC      P C   I    I  V       D   +G
Sbjct: 70  IRIACQELNTYDLTGCVIYTSCEPC------PMCLAAIYWSKISVVYYGNTRSDAAQAG 122


>gi|156976611|ref|YP_001447517.1| deoxycytidylate deaminase [Vibrio harveyi ATCC BAA-1116]
 gi|156528205|gb|ABU73290.1| hypothetical protein VIBHAR_05385 [Vibrio harveyi ATCC BAA-1116]
          Length = 168

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 53/159 (33%), Gaps = 32/159 (20%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------ 53
           M + S ++ RF   A   + W       +  V  +I K+  ++  G   Y          
Sbjct: 15  MSMISKWEKRFYQMAELVASWSK---DPSTQVGAVITKNNRIVSVGFNGYPHGVSDSVDT 71

Query: 54  -----------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                      HAE  A+  +  +  G   +VT  PC      P CA  II+ GI RV  
Sbjct: 72  DERELKYLKTLHAEENAILFSKRDLDGCDIWVTHFPC------PNCAAKIIQTGIARVSC 125

Query: 103 CVDDPDVRVS-----GRGLQWLSQKGIIVDRMMESEGKI 136
                D                 Q G+ V+ +  +E + 
Sbjct: 126 PEQSEDFLSRWGDKIKVSQDMFDQAGVEVNWLPINEIEE 164


>gi|307823574|ref|ZP_07653803.1| CMP/dCMP deaminase zinc-binding [Methylobacter tundripaludum SV96]
 gi|307735559|gb|EFO06407.1| CMP/dCMP deaminase zinc-binding [Methylobacter tundripaludum SV96]
          Length = 155

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 16/113 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
           F+  A+  +  +       P    +IVKD  ++               HAEV A+  A +
Sbjct: 5   FLQQAVDLAAENARSGQGGPY-GAIIVKDNQLVAASGNKVTSTIDPTAHAEVMAIRLACK 63

Query: 66  E-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           +      +G   Y + EPC      P C   I    + +V       D   + 
Sbjct: 64  KLNDFQLQGCILYSSCEPC------PMCLGAIYWARLAKVYFACSRHDAAAAN 110


>gi|251798037|ref|YP_003012768.1| CMP/dCMP deaminase zinc-binding [Paenibacillus sp. JDR-2]
 gi|247545663|gb|ACT02682.1| CMP/dCMP deaminase zinc-binding [Paenibacillus sp. JDR-2]
          Length = 155

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 17/113 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI----GRGVTAYGGCPHAEVQAL 60
           + D  FM  A++ S+  V     N     ++VK+G ++     +  +A     HAE   L
Sbjct: 2   NQDEIFMREAIKLSKLAV--EHGNEPFGAVLVKNGEIVYSNENQIYSATDPTFHAEAGLL 59

Query: 61  EE-----AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                     + R  T Y + EPC        C+  ++   + R+V    D D
Sbjct: 60  RRFCAETHITDLREYTLYSSCEPCFM------CSGAMVWTRLGRLVYAASDMD 106


>gi|296392969|ref|YP_003657853.1| CMP/dCMP deaminase zinc-binding protein [Segniliparus rotundus DSM
           44985]
 gi|296180116|gb|ADG97022.1| CMP/dCMP deaminase zinc-binding protein [Segniliparus rotundus DSM
           44985]
          Length = 180

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 47/131 (35%), Gaps = 22/131 (16%)

Query: 30  SVACLIV-KDGIVIGRGVTAYGG----CPHAEVQALEEA------GEEARGATAYVTLEP 78
            V  ++   DG  + R   A         HAE+ AL +A      G    G T  VTLEP
Sbjct: 39  PVGAVVFGPDGKELARAANAREAFGDPTAHAEILALRQAAAILGDGWRLIGCTLAVTLEP 98

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESE 133
           C        CA   +   I R+V    +P     G          L+ +  +   ++E+E
Sbjct: 99  C------TMCAGAAVNARIARIVFGAREPKTGAVGSLWDVVTDPRLNHRPQVRSGVLEAE 152

Query: 134 GKIFLHAYLTR 144
                 ++  +
Sbjct: 153 CAELTRSFFRK 163


>gi|50365203|ref|YP_053628.1| deoxycytidylate deaminase [Mesoplasma florum L1]
 gi|50363759|gb|AAT75744.1| deoxycytidylate deaminase [Mesoplasma florum L1]
          Length = 157

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 54/155 (34%), Gaps = 37/155 (23%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPS--VACLIVKD-GIVIGRGV------------ 46
              +++  FM+ A         + S +PS  V  ++V +   +I  G             
Sbjct: 5   NFLNWEQFFMTVA-----KVCAMRSKDPSTQVGAILVNNLNQIISTGYNGFPRGVNDDEF 59

Query: 47  ----------TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                     T Y    HAE+ A+  A      +  YVTL PC+       C + II+ G
Sbjct: 60  PWTREGEWIDTKYPYVAHAELNAIVSARTNLTDSDVYVTLFPCNE------CTKIIIQAG 113

Query: 97  IRRVVVCVD-DPDVRVSGRGLQWLSQKGIIVDRMM 130
           I++V    D   D        + L    I   ++ 
Sbjct: 114 IKKVYYLEDKYKDSNEVKASKRMLDAAKIEYKQIN 148


>gi|114052458|ref|NP_001040508.1| DCMP deaminase [Bombyx mori]
 gi|95102556|gb|ABF51216.1| DCMP deaminase [Bombyx mori]
          Length = 189

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 46/131 (35%), Gaps = 40/131 (30%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
             FM+ A   ++           V   IV  D  ++G G     G P             
Sbjct: 29  EYFMAVAFLAAKRSK---DPKTQVGACIVNNDNKIVGIGY---NGMPIGCNDDDFPWGKN 82

Query: 54  -------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                        HAE+ A L +   + +  T YV L PC+       CA+ II+ GI++
Sbjct: 83  TPSPLDSKYLYVCHAEMNAILNKNSADVKDCTIYVGLFPCNE------CAKMIIQSGIKK 136

Query: 100 VVVCVDDPDVR 110
           VV   D    R
Sbjct: 137 VVYLSDKNAHR 147


>gi|68466625|ref|XP_722508.1| potential tRNA wobble position adenosine deaminase subunit [Candida
           albicans SC5314]
 gi|68466908|ref|XP_722369.1| potential tRNA wobble position adenosine deaminase subunit [Candida
           albicans SC5314]
 gi|46444339|gb|EAL03614.1| potential tRNA wobble position adenosine deaminase subunit [Candida
           albicans SC5314]
 gi|46444487|gb|EAL03761.1| potential tRNA wobble position adenosine deaminase subunit [Candida
           albicans SC5314]
          Length = 281

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 25/172 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGV----TAYGGCPHAEVQALEE 62
           ++M+ +L      +    T   V+C++V  K   +I  G      +  G  HAE  AL+ 
Sbjct: 10  QYMAISLFVGYKALLNNET--PVSCIVVDSKSDKIISIGYNYTNHSLNGTQHAEFIALQR 67

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            GE     +      YVT+EPC        CA ++ + GI++V+    +     +G  L 
Sbjct: 68  FGEQKSSIDYNDLILYVTVEPCIM------CASYLRQLGIKKVIFGCGNDRFGGNGTILS 121

Query: 118 WLSQKGIIVD------RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163
             S   +          +  +EG   L  +  +Q E   +  +K     ++ 
Sbjct: 122 IHSDITLPNAAYSSIGGICRTEGIQLLRNFYIQQNESAPNPKIKKNTDIESK 173


>gi|157963093|ref|YP_001503127.1| zinc-binding CMP/dCMP deaminase [Shewanella pealeana ATCC 700345]
 gi|157848093|gb|ABV88592.1| CMP/dCMP deaminase zinc-binding [Shewanella pealeana ATCC 700345]
          Length = 144

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 48/152 (31%), Gaps = 31/152 (20%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----------- 51
           ++ +  RF+  A   + W       +  V  +I +D  ++  G   Y             
Sbjct: 2   MTKWATRFLQMAELVASWSK---DPSTQVGAVITEDNRIVSLGFNGYPHGISDSAETDNR 58

Query: 52  ------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                   HAE  A+  A  +  G   +VT  PC      P CA  II+ G+  V     
Sbjct: 59  EMKLLKTLHAEENAILYAKRDLSGCEIWVTHFPC------PNCAAKIIQTGLSTVHSPQP 112

Query: 106 DPD-----VRVSGRGLQWLSQKGIIVDRMMES 132
             D                 Q G+ VD M   
Sbjct: 113 SEDFLSRWADKIKISQDMFDQAGVKVDWMQAD 144


>gi|21355527|ref|NP_650610.1| CG5292 [Drosophila melanogaster]
 gi|7300237|gb|AAF55401.1| CG5292 [Drosophila melanogaster]
 gi|18447473|gb|AAL68299.1| RE41712p [Drosophila melanogaster]
 gi|220948458|gb|ACL86772.1| CG5292-PA [synthetic construct]
 gi|220960450|gb|ACL92761.1| CG5292-PA [synthetic construct]
          Length = 160

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 47/161 (29%), Gaps = 25/161 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE- 62
           A FM  AL  +R      +    V C+ V    V+ RG            HAE   ++  
Sbjct: 2   AAFMEEALVEARRAR--DAGEVPVGCVFVHGDKVVARGGNEVNVHRNATRHAEFICIDAI 59

Query: 63  ----------AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
                     A +     T  VT+EPC        C+  +   G++ ++   ++      
Sbjct: 60  LASCRERRLPARQLFSEITVVVTVEPCIM------CSAALHTLGVKEIIYGCENDRFGGK 113

Query: 113 G--RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSH 151
                   +  +  I   +   E    L  +          
Sbjct: 114 TVVDVAAVVGHRIEITGGVRADEAMALLKDFYKGDNPAAPP 154


>gi|152112359|sp|Q4UJW9|Y1319_RICFE RecName: Full=Uncharacterized deaminase RF_1319
          Length = 144

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 42/122 (34%), Gaps = 19/122 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVT----AYGGCPHAEVQALEEA- 63
           M  AL+ +   +        V  +IV   +  +I               HAE+ A+ EA 
Sbjct: 1   MEQALKQA--GIAFDKNEVPVGAVIVDRLNQKIIVSSHNNTEEKNNALYHAEIIAINEAC 58

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                +       YVTLEPC+       CA  I    ++R+     D         L++ 
Sbjct: 59  NLISSKNLNDYDIYVTLEPCAM------CAAAIAHSRLKRLFYGASDSKHGAVESNLRYF 112

Query: 120 SQ 121
           + 
Sbjct: 113 NS 114


>gi|9630421|ref|NP_046853.1| gp36.1 [Mycobacterium phage D29]
 gi|6014935|sp|O22000|DCTD_BPMD2 RecName: Full=Deoxycytidylate deaminase; AltName: Full=dCMP
           deaminase
 gi|3172285|gb|AAC18478.1| putative deoxycytidinylate deaminase [Mycobacterium phage D29]
          Length = 128

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 42/133 (31%), Gaps = 40/133 (30%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           M    +D  F+  A   ++      S    V  ++VKD  V G G               
Sbjct: 1   MSRPDWDEYFLGIATAAAQRSDCERSK---VGAVVVKDRRVRGTGYNGAPAGAAGCSTCP 57

Query: 54  -----------------------HAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCA 89
                                  HAE  AL     E+  GAT YVT EPC        C+
Sbjct: 58  RRLSGAVPGVSDYSSGATRCVAVHAEANALLYCDREDLIGATLYVTREPCY------ACS 111

Query: 90  QFIIECGIRRVVV 102
             I   GI RVV 
Sbjct: 112 NLIAASGIERVVY 124


>gi|256397666|ref|YP_003119230.1| CMP/dCMP deaminase zinc-binding [Catenulispora acidiphila DSM
           44928]
 gi|256363892|gb|ACU77389.1| CMP/dCMP deaminase zinc-binding [Catenulispora acidiphila DSM
           44928]
          Length = 157

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 49/146 (33%), Gaps = 33/146 (22%)

Query: 30  SVACLIVK-DGIVIGRGVTAYGG----CPHAEVQALEEAGE-----------------EA 67
            +  +I+   G VI +G            HAE+ A+  A                     
Sbjct: 18  PIGAVILDPTGTVIAQGRNTREAEGDPTGHAEIVAIRSAAHTLHTKAAQTDPKAPPTWRL 77

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI--- 124
              T  VTLEPC      P CA  I+   + RVV    DP    +G     L    +   
Sbjct: 78  TDCTLVVTLEPC------PMCAGAIVLSRLTRVVFGAWDPKAGAAGSLYDILRDPRLNHT 131

Query: 125 --IVDRMMESEGKIFLHAYLTRQVEK 148
             ++  ++E +    L+ +     +K
Sbjct: 132 PEVIPGVLEPQCHAALNRFFEHHRQK 157


>gi|169351688|ref|ZP_02868626.1| hypothetical protein CLOSPI_02469 [Clostridium spiroforme DSM 1552]
 gi|169291910|gb|EDS74043.1| hypothetical protein CLOSPI_02469 [Clostridium spiroforme DSM 1552]
          Length = 245

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 6/104 (5%)

Query: 222 IILDPHFKLS---LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLK 276
           ++ DP   L+         +    + V+I+  N         ++  I+ I       DL 
Sbjct: 81  VVFDPQGTLNWKEQSLNNFRLIGKSVVVILLNNVSMGYLDHLKELGISYILGGETKIDLH 140

Query: 277 KLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
            ++ IL  +  +  LL++GG  +  SF+N  LVD I L  +  +
Sbjct: 141 HVMDILYIKCKIKKLLLQGGGILNGSFVNKNLVDEISLIIAPDI 184


>gi|220926362|ref|YP_002501664.1| CMP/dCMP deaminase [Methylobacterium nodulans ORS 2060]
 gi|219950969|gb|ACL61361.1| CMP/dCMP deaminase zinc-binding [Methylobacterium nodulans ORS
           2060]
          Length = 158

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 43/127 (33%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            V  ++++ G V+               HAE+ A+  A      E   G   YVTLEPC+
Sbjct: 33  PVGAVVMRGGTVLAVAGNRPRALRDPTAHAEILAIRAACQAIGDERLAGCDLYVTLEPCA 92

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGK 135
                  CA  I    IRR+     DP       G +            +   + E+E  
Sbjct: 93  M------CAGAISFARIRRLYFAAADPKGGAVENGPRLFSQPTCHHAPEVYGGLREAEAA 146

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 147 ALLRDFF 153


>gi|221068807|ref|ZP_03544912.1| CMP/dCMP deaminase zinc-binding [Comamonas testosteroni KF-1]
 gi|220713830|gb|EED69198.1| CMP/dCMP deaminase zinc-binding [Comamonas testosteroni KF-1]
          Length = 162

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 22/121 (18%)

Query: 1   MPVSSFDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGC 52
           M   +   +++  ++R +    R     T        ++V+DG ++ R V          
Sbjct: 1   MNNENDSGKYLLESIRLAMGNVRGRESATWP---FGAVLVRDGQILARAVNQVDELCDPS 57

Query: 53  PHAEVQALE-----EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
            HAE+QAL      +   +  GA  Y +  PCS       C   ++  G+++V     + 
Sbjct: 58  AHAEMQALRIGAKAQGSTDLSGAVMYASGYPCSM------CYTAMLLAGVKQVYFAYSNE 111

Query: 108 D 108
           D
Sbjct: 112 D 112


>gi|170757063|ref|YP_001780911.1| guanine deaminase [Clostridium botulinum B1 str. Okra]
 gi|169122275|gb|ACA46111.1| guanine deaminase [Clostridium botulinum B1 str. Okra]
          Length = 157

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 31/90 (34%), Gaps = 15/90 (16%)

Query: 30  SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
                IVK+G VI        G      H EV  + +A +     +  G   Y T EPC 
Sbjct: 25  PFGSAIVKNGEVIAVAHNTVVGDNDPTAHGEVNVIRKACKKLNTFDLSGCELYTTSEPC- 83

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
                P C   II   I +V       D R
Sbjct: 84  -----PMCMSAIIWANISKVYYGCTVEDAR 108


>gi|85858030|ref|YP_460232.1| deoxycytidylate deaminase [Syntrophus aciditrophicus SB]
 gi|85721121|gb|ABC76064.1| deoxycytidylate deaminase [Syntrophus aciditrophicus SB]
          Length = 150

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 52/155 (33%), Gaps = 43/155 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
            +D  F+  A   +R    L     +V  ++V++  ++  G                   
Sbjct: 9   EWDVYFLDIAALVARRSTCLRR---NVGAVLVRERRILSTGYNGAPSGLRHCLDIGCLRD 65

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G    GAT Y T +PC        CA+ II 
Sbjct: 66  QLQVPSGERHELCRGLHAEQNAIIQAALHGVGIAGATLYCTNQPCVI------CAKMIIN 119

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            GI  VVV     D        + L + GI V  +
Sbjct: 120 AGIDSVVV----RDGYCDELACEILGEAGIRVTTL 150


>gi|50083486|ref|YP_044996.1| putative cytidine and deoxycytidylate deaminase zinc-binding
           protein [Acinetobacter sp. ADP1]
 gi|49529462|emb|CAG67174.1| putative cytidine and deoxycytidylate deaminase zinc-binding
           protein [Acinetobacter sp. ADP1]
          Length = 184

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 58/168 (34%), Gaps = 34/168 (20%)

Query: 1   MPVSSFDARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRGVT---AYGGCP-- 53
           M  S  D  F+      +      GL   +P  A ++  DG ++           G P  
Sbjct: 25  MHPSEQDLYFLRKTFALAEQTKAQGL---HPFAAIVVDADGNIVTEAGNNSLPPTGDPTR 81

Query: 54  HAEVQALEEAG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV---- 104
           HAE  A  +A      +E R  T Y   EPC+       CA  I   GI RVV  +    
Sbjct: 82  HAETVAAGQAARLKSLKELRTCTLYTNAEPCAM------CAGAIYWTGIGRVVYGMSEKK 135

Query: 105 ---------DDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT 143
                    ++P + +  R +    Q+GI V     SE     H    
Sbjct: 136 LLSITGDHPENPTLSLPCRTVFASGQRGIEVIGPCLSEEAAVAHQGFW 183


>gi|224500498|ref|ZP_03668847.1| hypothetical protein LmonF1_12846 [Listeria monocytogenes Finland
           1988]
 gi|224501577|ref|ZP_03669884.1| hypothetical protein LmonFR_03502 [Listeria monocytogenes FSL
           R2-561]
          Length = 160

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 31/141 (21%)

Query: 30  SVACLIVKDGIVIGRGVTA-YGGCP------------------HAEVQALEEA---GEEA 67
            V   IV+D  +I  G      G                    HAE+ A+ +    G   
Sbjct: 1   MVGATIVRDKRIIAGGYNGSIAGGDHCAEHGCYVVDGHCIRTIHAEMNAILQCAKFGATT 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
             A  YVT  PC        C + II+ GI++V    D  +   +   L+  +  G+ + 
Sbjct: 61  DKAELYVTHFPCL------ACTKSIIQAGIKKVYFAKDYKNHPYA---LELFNIAGVELQ 111

Query: 128 RMMESEGKIFLHAYLTRQVEK 148
           ++   E  + ++ +   ++  
Sbjct: 112 KVEFDESVLQVNNWNGEKMHT 132


>gi|21222441|ref|NP_628220.1| deaminase [Streptomyces coelicolor A3(2)]
 gi|289770376|ref|ZP_06529754.1| deaminase [Streptomyces lividans TK24]
 gi|13122131|emb|CAC32309.1| putative deaminase [Streptomyces coelicolor A3(2)]
 gi|289700575|gb|EFD68004.1| deaminase [Streptomyces lividans TK24]
          Length = 143

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 17/104 (16%)

Query: 30  SVACLIVK-DGI-VIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEP 78
            V  +++  DG  V+  G            HAEV A+  A          G T  VTLEP
Sbjct: 18  PVGAVVLAPDGRTVLSAGHNEREATGDPTAHAEVLAIRRAAGELGEWRLSGCTLVVTLEP 77

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           C        CA  +++  + RVV    D     +G     +  +
Sbjct: 78  C------TMCAGALVQSRVDRVVYGARDDKAGAAGSLWDVVRDR 115


>gi|47094097|ref|ZP_00231822.1| comE operon protein 2 [Listeria monocytogenes str. 4b H7858]
 gi|47017527|gb|EAL08335.1| comE operon protein 2 [Listeria monocytogenes str. 4b H7858]
          Length = 160

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 31/141 (21%)

Query: 30  SVACLIVKDGIVIGRGVTA-YGGCP------------------HAEVQALEEA---GEEA 67
            V   IV+D  +I  G      G                    HAE+ A+ +    G   
Sbjct: 1   MVGATIVRDKRIIAGGYNGSIAGGDHCAEHGCYVVDGHCIRTIHAEMNAILQCAKFGATT 60

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
             A  YVT  PC        C + II+ GI++V    D  +   +   L+  +  G+ + 
Sbjct: 61  DKAELYVTHFPCL------ACTKSIIQAGIKKVYFAKDYKNHPYA---LELFNIAGVELQ 111

Query: 128 RMMESEGKIFLHAYLTRQVEK 148
           ++   E  + ++ +   ++  
Sbjct: 112 KVEFDESVLQVNNWNGEKMHT 132


>gi|331028070|ref|YP_004421784.1| deoxycytidylate deaminase [Roseobacter phage RDJL Phi 1]
 gi|301341533|gb|ADK73417.1| deoxycytidylate deaminase [Roseobacter phage RDJL Phi 1]
          Length = 154

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 49/145 (33%), Gaps = 33/145 (22%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVA-CLIVKDGIVIGRGVTAYG-------------- 50
           +D RFM  A   +R  V     +  V  C++  D      G +                 
Sbjct: 9   WDKRFMRLACE-ARTWV--KGPDLGVGACVVSPDNRGFSLGYSGLPRGMKDTNDRITETE 65

Query: 51  ----GCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV-- 104
                  HAE+ A+  A     G T Y T  PCSH      CA  II+ GI+RVV  +  
Sbjct: 66  FKDHHMVHAELNAILNASRSVVGWTLYATTHPCSH------CAGAIIQAGIKRVVAPMPP 119

Query: 105 ---DDPDVRVSGRGLQWLSQKGIIV 126
              D               + G+I 
Sbjct: 120 LHSDSRWAPSWAHARMAFKEAGVIF 144


>gi|226330324|ref|ZP_03805842.1| hypothetical protein PROPEN_04238 [Proteus penneri ATCC 35198]
 gi|225201119|gb|EEG83473.1| hypothetical protein PROPEN_04238 [Proteus penneri ATCC 35198]
          Length = 177

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 76/218 (34%), Gaps = 56/218 (25%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPI----------TGFISKNQVHLLRAQSDAILVGIGTVL 201
             + IA S D  I         +          TGFI+      L  + DA+++G  T+ 
Sbjct: 3   NIVFIATSLDGYIADRQGKLDWLYSIPNPNNIDTGFIA------LMEKIDALVMGRNTLD 56

Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
                                IL  +        +    +L+  +    N         +
Sbjct: 57  T--------------------ILSFNCDWPYTKPVF---VLSNTMTTVPNGYSGKVFLVK 93

Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            +           L+ ++T L  +G   L ++GG  V  +F+N  L+D +I+ R  I++G
Sbjct: 94  GE-----------LQNIITELNAKGFNELYIDGGVTV-QNFLNEDLIDQMIITRFPILLG 141

Query: 322 EGGIPSPL-EEGYLEKNFMCVRRDYFGSDVC-LEYIGK 357
            G   +PL  E     NF  ++ +    ++    Y+  
Sbjct: 142 GG---TPLFGELKQPLNFKVIKNEILLENLVQTTYLRD 176


>gi|242279729|ref|YP_002991858.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio salexigens DSM 2638]
 gi|242122623|gb|ACS80319.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio salexigens DSM 2638]
          Length = 169

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 40/118 (33%), Gaps = 17/118 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65
            M  A+R +          P  A L   +G ++  G    +T      HAEV  +  A +
Sbjct: 23  MMDTAIREAFKAR-RHEEVPIGAALFTAEGELLATGNNTPLTQNDPTGHAEVNCIRNACK 81

Query: 66  E------ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
                   RG    VTLEPC        C   II   +  VV    DP        L+
Sbjct: 82  NLDNYRLPRGTILVVTLEPCIM------CLGAIIHARVGGVVFGAPDPKAGAVVSNLE 133


>gi|147671596|ref|YP_001215236.1| putative deoxycytidylate deaminase [Vibrio cholerae O395]
 gi|153822471|ref|ZP_01975138.1| deoxycytidylate deaminase, putative [Vibrio cholerae B33]
 gi|254849997|ref|ZP_05239347.1| deoxycytidylate deaminase [Vibrio cholerae MO10]
 gi|297580143|ref|ZP_06942070.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|298499626|ref|ZP_07009432.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|126519994|gb|EAZ77217.1| deoxycytidylate deaminase, putative [Vibrio cholerae B33]
 gi|146313979|gb|ABQ18519.1| putative deoxycytidylate deaminase [Vibrio cholerae O395]
 gi|254845702|gb|EET24116.1| deoxycytidylate deaminase [Vibrio cholerae MO10]
 gi|297535789|gb|EFH74623.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297541607|gb|EFH77658.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 166

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 47/155 (30%), Gaps = 35/155 (22%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPS--VACLIVKDGIVIGRGVTAYGG-------------- 51
            RF   A       VG  S +PS  V  +I K   ++  G   Y                
Sbjct: 12  QRFFQMA-EL----VGSWSKDPSTQVGAVITKQNRIVSVGFNGYPHGISDSASTDDRDMK 66

Query: 52  ---CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                HAE  A+  A  +  G   YVT  PC      P CA  II+ GI  V       D
Sbjct: 67  YLKTLHAEENAILFAKRDLDGCEIYVTHFPC------PNCAAKIIQTGISAVHCPEQSED 120

Query: 109 VRVS-----GRGLQWLSQKGIIVDRMMESEGKIFL 138
                            Q G+ V  +   E K   
Sbjct: 121 FLSRWGDKIKVSQDMFLQAGVKVHWLPLVELKHIN 155


>gi|153214325|ref|ZP_01949326.1| deoxycytidylate deaminase, putative [Vibrio cholerae 1587]
 gi|124115382|gb|EAY34202.1| deoxycytidylate deaminase, putative [Vibrio cholerae 1587]
          Length = 161

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 47/155 (30%), Gaps = 35/155 (22%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPS--VACLIVKDGIVIGRGVTAYGG-------------- 51
            RF   A       VG  S +PS  V  +I K   ++  G   Y                
Sbjct: 7   QRFFQMA-EL----VGSWSKDPSTQVGAVITKQNRIVSVGFNGYPHGISDSASTDDRDMK 61

Query: 52  ---CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                HAE  A+  A  +  G   YVT  PC      P CA  II+ GI  V       D
Sbjct: 62  YLKTLHAEENAILFAKRDLDGCEIYVTHFPC------PNCAAKIIQTGISAVHCPEQSED 115

Query: 109 VRVS-----GRGLQWLSQKGIIVDRMMESEGKIFL 138
                            Q G+ V  +   E K   
Sbjct: 116 FLSRWGDKIKVSQDMFLQAGVKVHWLPLVELKHIN 150


>gi|153825415|ref|ZP_01978082.1| deoxycytidylate deaminase [Vibrio cholerae MZO-2]
 gi|254224811|ref|ZP_04918427.1| deoxycytidylate deaminase, putative [Vibrio cholerae V51]
 gi|125622874|gb|EAZ51192.1| deoxycytidylate deaminase, putative [Vibrio cholerae V51]
 gi|149740961|gb|EDM55038.1| deoxycytidylate deaminase [Vibrio cholerae MZO-2]
          Length = 161

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 47/155 (30%), Gaps = 35/155 (22%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPS--VACLIVKDGIVIGRGVTAYGG-------------- 51
            RF   A       VG  S +PS  V  +I K   ++  G   Y                
Sbjct: 7   QRFFQMA-EL----VGSWSKDPSTQVGAVITKQNRIVSVGFNGYPHGISDSASTDDRDMK 61

Query: 52  ---CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                HAE  A+  A  +  G   YVT  PC      P CA  II+ GI  V       D
Sbjct: 62  YLKTLHAEENAILFAKRDLDGCEIYVTHFPC------PNCAAKIIQTGISAVHCPEQSED 115

Query: 109 VRVS-----GRGLQWLSQKGIIVDRMMESEGKIFL 138
                            Q G+ V  +   E K   
Sbjct: 116 FLSRWGDKIKVSQDMFLQAGVKVHWLPLVELKHIN 150


>gi|15601595|ref|NP_233226.1| deoxycytidylate deaminase, putative [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121588185|ref|ZP_01677930.1| deoxycytidylate deaminase, putative [Vibrio cholerae 2740-80]
 gi|121729861|ref|ZP_01682290.1| deoxycytidylate deaminase, putative [Vibrio cholerae V52]
 gi|153802745|ref|ZP_01957331.1| deoxycytidylate deaminase, putative [Vibrio cholerae MZO-3]
 gi|153829488|ref|ZP_01982155.1| putative deoxycytidylate deaminase [Vibrio cholerae 623-39]
 gi|227812406|ref|YP_002812416.1| putative deoxycytidylate deaminase [Vibrio cholerae M66-2]
 gi|229506010|ref|ZP_04395519.1| deoxycytidylate deaminase [Vibrio cholerae BX 330286]
 gi|229510134|ref|ZP_04399614.1| deoxycytidylate deaminase [Vibrio cholerae B33]
 gi|229514270|ref|ZP_04403731.1| deoxycytidylate deaminase [Vibrio cholerae TMA 21]
 gi|229517736|ref|ZP_04407181.1| deoxycytidylate deaminase [Vibrio cholerae RC9]
 gi|229522385|ref|ZP_04411801.1| deoxycytidylate deaminase [Vibrio cholerae TM 11079-80]
 gi|229526654|ref|ZP_04416058.1| deoxycytidylate deaminase [Vibrio cholerae bv. albensis VL426]
 gi|229528303|ref|ZP_04417694.1| deoxycytidylate deaminase [Vibrio cholerae 12129(1)]
 gi|229605541|ref|YP_002876245.1| deoxycytidylate deaminase [Vibrio cholerae MJ-1236]
 gi|254284476|ref|ZP_04959443.1| deoxycytidylate deaminase, putative [Vibrio cholerae AM-19226]
 gi|255746409|ref|ZP_05420356.1| deoxycytidylate deaminase [Vibrio cholera CIRS 101]
 gi|262158237|ref|ZP_06029354.1| deoxycytidylate deaminase [Vibrio cholerae INDRE 91/1]
 gi|262169113|ref|ZP_06036806.1| deoxycytidylate deaminase [Vibrio cholerae RC27]
 gi|262191582|ref|ZP_06049763.1| deoxycytidylate deaminase [Vibrio cholerae CT 5369-93]
 gi|9658270|gb|AAF96738.1| deoxycytidylate deaminase, putative [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121547577|gb|EAX57679.1| deoxycytidylate deaminase, putative [Vibrio cholerae 2740-80]
 gi|121628394|gb|EAX60893.1| deoxycytidylate deaminase, putative [Vibrio cholerae V52]
 gi|124121702|gb|EAY40445.1| deoxycytidylate deaminase, putative [Vibrio cholerae MZO-3]
 gi|148875007|gb|EDL73142.1| putative deoxycytidylate deaminase [Vibrio cholerae 623-39]
 gi|150425261|gb|EDN17037.1| deoxycytidylate deaminase, putative [Vibrio cholerae AM-19226]
 gi|227011548|gb|ACP07759.1| putative deoxycytidylate deaminase [Vibrio cholerae M66-2]
 gi|227015488|gb|ACP11697.1| putative deoxycytidylate deaminase [Vibrio cholerae O395]
 gi|229334665|gb|EEO00151.1| deoxycytidylate deaminase [Vibrio cholerae 12129(1)]
 gi|229336812|gb|EEO01830.1| deoxycytidylate deaminase [Vibrio cholerae bv. albensis VL426]
 gi|229340370|gb|EEO05376.1| deoxycytidylate deaminase [Vibrio cholerae TM 11079-80]
 gi|229345772|gb|EEO10745.1| deoxycytidylate deaminase [Vibrio cholerae RC9]
 gi|229348250|gb|EEO13208.1| deoxycytidylate deaminase [Vibrio cholerae TMA 21]
 gi|229352579|gb|EEO17519.1| deoxycytidylate deaminase [Vibrio cholerae B33]
 gi|229356361|gb|EEO21279.1| deoxycytidylate deaminase [Vibrio cholerae BX 330286]
 gi|229372027|gb|ACQ62449.1| deoxycytidylate deaminase [Vibrio cholerae MJ-1236]
 gi|255736163|gb|EET91561.1| deoxycytidylate deaminase [Vibrio cholera CIRS 101]
 gi|262022394|gb|EEY41102.1| deoxycytidylate deaminase [Vibrio cholerae RC27]
 gi|262029919|gb|EEY48566.1| deoxycytidylate deaminase [Vibrio cholerae INDRE 91/1]
 gi|262032547|gb|EEY51104.1| deoxycytidylate deaminase [Vibrio cholerae CT 5369-93]
 gi|327485838|gb|AEA80244.1| dCMP deaminase [Vibrio cholerae LMA3894-4]
          Length = 161

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 47/155 (30%), Gaps = 35/155 (22%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPS--VACLIVKDGIVIGRGVTAYGG-------------- 51
            RF   A       VG  S +PS  V  +I K   ++  G   Y                
Sbjct: 7   QRFFQMA-EL----VGSWSKDPSTQVGAVITKQNRIVSVGFNGYPHGISDSASTDDRDMK 61

Query: 52  ---CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                HAE  A+  A  +  G   YVT  PC      P CA  II+ GI  V       D
Sbjct: 62  YLKTLHAEENAILFAKRDLDGCEIYVTHFPC------PNCAAKIIQTGISAVHCPEQSED 115

Query: 109 VRVS-----GRGLQWLSQKGIIVDRMMESEGKIFL 138
                            Q G+ V  +   E K   
Sbjct: 116 FLSRWGDKIKVSQDMFLQAGVKVHWLPLVELKHIN 150


>gi|146295406|ref|YP_001179177.1| CMP/dCMP deaminase, zinc-binding [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145408982|gb|ABP65986.1| tRNA-adenosine deaminase [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 143

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 17/126 (13%)

Query: 30  SVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCSHYG 83
            +A  +++DG +I      +     HAE+ A+ +A      ++ RG    VT EPC    
Sbjct: 21  PIAAAVLRDGEIISIQKNDSKNAIFHAEILAILDAASKLSTKDLRGCEMVVTKEPC---- 76

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGKIFL 138
             P C   I+   I R+     D  +  +    +      L+ K  ++  + E E K  L
Sbjct: 77  --PMCMSAIVLSKIDRLYFGARDFKMGAAESCFKLSQDPNLNHKVEVIGGICEEECKALL 134

Query: 139 HAYLTR 144
            ++  +
Sbjct: 135 KSFFEK 140


>gi|308176278|ref|YP_003915684.1| cytosine deaminase [Arthrobacter arilaitensis Re117]
 gi|307743741|emb|CBT74713.1| putative cytosine deaminase [Arthrobacter arilaitensis Re117]
          Length = 158

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 44/134 (32%), Gaps = 27/134 (20%)

Query: 30  SVACLIVK-DGIVIGRGVTAYGG----CPHAEVQALEEA-----------GEEARGATAY 73
            +  +I+   G V+  G            HAEV A+  A           G      T  
Sbjct: 26  PIGAVILSPAGEVLATGRNEREAGNDPTAHAEVVAIRNAVKALEAKGEDDGWRLSDCTLV 85

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDR 128
           VTLEPC+       CA  I+   I ++V    D      G     + +  +     +  R
Sbjct: 86  VTLEPCAM------CAGAIVLSRIPKLVFGAWDEKAGACGSVFDIVREPRLNHWVEVYSR 139

Query: 129 MMESEGKIFLHAYL 142
           + E E    L  + 
Sbjct: 140 VKEEECAELLREFF 153


>gi|152971270|ref|YP_001336379.1| putative adenosine deaminase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|330013669|ref|ZP_08307752.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Klebsiella sp. MS 92-3]
 gi|150956119|gb|ABR78149.1| putative adenosine deaminase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|328533404|gb|EGF60142.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Klebsiella sp. MS 92-3]
          Length = 152

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 43/115 (37%), Gaps = 18/115 (15%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG---VT-AYGGCPHAEVQ 58
           +S+ D R++  AL  ++ ++           ++V++  ++         +     HAE+ 
Sbjct: 1   MSAHD-RYLQRALVLAKQNIADGGR--PFGAVLVRNDEIVAESVNTFHLSGDPTAHAELN 57

Query: 59  ALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           A+ +          R    Y + +PC      P C   +   G+R V     + D
Sbjct: 58  AVRDLAARLGSAVLRECVIYASGQPC------PMCLSALYLTGVREVFFANSNQD 106


>gi|81428680|ref|YP_395680.1| putative type II secretion/competence system, dCMP deaminase
           ComEB-like [Lactobacillus sakei subsp. sakei 23K]
 gi|78610322|emb|CAI55371.1| Putative bacterial type II secretion/competence system, DCMP
           deaminase ComEB-like [Lactobacillus sakei subsp. sakei
           23K]
          Length = 162

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 37/152 (24%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
           MP +     FM  ++  S      T     V  L++++  +I  G               
Sbjct: 6   MPWN---QYFMLQSVLLSMRS---TCPRLFVGALVIRNRRIIAGGYNGSVAHEDHCIDVG 59

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G +  GA  YVT  PC        C + II+ GI 
Sbjct: 60  CLMRDGHCLRTIHAEMNALTQCAKFGVQTEGAEIYVTHFPCLQ------CTKLIIQAGIS 113

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           ++    D  +   + + ++     GI +D++ 
Sbjct: 114 KIHYQKDYHNDPYALKLIEK---SGIELDQVN 142


>gi|323304324|gb|EGA58097.1| Tad2p [Saccharomyces cerevisiae FostersB]
          Length = 242

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 67/198 (33%), Gaps = 36/198 (18%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYG----GCPHAEVQALEE 62
           + M  A+R +R+ +    T   VAC+ V    G V+  G+        G  HAE   +++
Sbjct: 5   KHMRTAVRLARYALDHDET--PVACIFVHTPTGQVMAYGMNDTNKSLTGVAHAEFMGIDQ 62

Query: 63  --AGEEARGA-------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP------ 107
             A   +RG        T YVT+EPC        CA  + + GI +VV    +       
Sbjct: 63  IKAMLGSRGVVDVFKDITLYVTVEPCIM------CASALKQLGIGKVVFGCGNERFGGNG 116

Query: 108 -----DVRVSGRGLQWLSQKGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
                +        +  S  G   +  ++  E  + L  +  RQ E+      K     D
Sbjct: 117 TVLSVNHDTCTLVPKNNSAAGYESIPGILRKEAIMLLRYFYVRQNERAPKPRSKSDRVLD 176

Query: 162 NMIGMAGCGSVPITGFIS 179
                            +
Sbjct: 177 -KNTFPPMEWSKYLNEEA 193


>gi|207343953|gb|EDZ71253.1| YJL035Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 250

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 67/198 (33%), Gaps = 36/198 (18%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYG----GCPHAEVQALEE 62
           + M  A+R +R+ +    T   VAC+ V    G V+  G+        G  HAE   +++
Sbjct: 5   KHMRTAVRLARYALDHDET--PVACIFVHTPTGQVMAYGMNDTNKSLTGVAHAEFMGIDQ 62

Query: 63  --AGEEARGA-------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP------ 107
             A   +RG        T YVT+EPC        CA  + + GI +VV    +       
Sbjct: 63  IKAMLGSRGVVDVFKDITLYVTVEPCIM------CASALKQLGIGKVVFGCGNERFGGNG 116

Query: 108 -----DVRVSGRGLQWLSQKGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
                +        +  S  G   +  ++  E  + L  +  RQ E+      K     D
Sbjct: 117 TVLSVNHDTCTLVPKNNSAAGYESIPGILRKEAIMLLRYFYVRQNERAPKPRSKSDRVLD 176

Query: 162 NMIGMAGCGSVPITGFIS 179
                            +
Sbjct: 177 -KNTFPPMEWSKYLNEEA 193


>gi|190409464|gb|EDV12729.1| tRNA-specific adenosine deaminase 2 [Saccharomyces cerevisiae
           RM11-1a]
          Length = 250

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 67/198 (33%), Gaps = 36/198 (18%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYG----GCPHAEVQALEE 62
           + M  A+R +R+ +    T   VAC+ V    G V+  G+        G  HAE   +++
Sbjct: 5   KHMRTAVRLARYALDHDET--PVACIFVHTPTGQVMAYGMNDTNKSLTGVAHAEFMGIDQ 62

Query: 63  --AGEEARGA-------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP------ 107
             A   +RG        T YVT+EPC        CA  + + GI +VV    +       
Sbjct: 63  IKAMLGSRGVVDVFKDITLYVTVEPCIM------CASALKQLGIGKVVFGCGNERFGGNG 116

Query: 108 -----DVRVSGRGLQWLSQKGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
                +        +  S  G   +  ++  E  + L  +  RQ E+      K     D
Sbjct: 117 TVLSVNHDTCTLVPKNNSAAGYESIPGILRKEAIMLLRYFYVRQNERAPKPRSKSDRVLD 176

Query: 162 NMIGMAGCGSVPITGFIS 179
                            +
Sbjct: 177 -KNTFPPMEWSKYLNEEA 193


>gi|319441800|ref|ZP_07990956.1| putative cytosine/adenosine deaminase [Corynebacterium variabile
           DSM 44702]
          Length = 167

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 46/151 (30%), Gaps = 24/151 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGG----CPHAEVQALE 61
           D   M+ AL  +         +  V  ++   DG  +               HAEV AL 
Sbjct: 22  DRARMARALEVAAS---TPDGDVPVGAVVYAPDGTELAAATNRREADADPTAHAEVLALR 78

Query: 62  EAGE------EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            A             T  VTLEPC+       CA  ++   +R VV    +P     G  
Sbjct: 79  AATAAHGDAWRLTDCTLVVTLEPCAM------CAGAMVGARVRTVVFGAWEPRTGACGSV 132

Query: 116 LQWLS----QKGIIVDRMMESEGKIFLHAYL 142
                        +   ++  E +  +  + 
Sbjct: 133 FDVARESPLHAVEVRGGVLLDECEDLVREFF 163


>gi|311065133|ref|YP_003971859.1| cytosine/adenosine deaminase [Bifidobacterium bifidum PRL2010]
 gi|310867453|gb|ADP36822.1| Cytosine/adenosine deaminase [Bifidobacterium bifidum PRL2010]
          Length = 150

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 55/155 (35%), Gaps = 24/155 (15%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY--GGCP--HAEV 57
           +   D   M  A+               V  +++ + G VIGRG      G  P  HAE+
Sbjct: 1   MGELDEA-MCEAIALGERAGKQGDV--PVGAVVLDERGTVIGRGRNRREEGHDPLAHAEI 57

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           +A+ EA +          T  VTLEPC      P CA   I+  I R+V    D  +   
Sbjct: 58  EAMREAAQARGDWNLADCTLVVTLEPC------PMCAGACIQTHIGRIVFGAWDAKLGAC 111

Query: 113 GRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
           G          +     +V  + E+     L  + 
Sbjct: 112 GSIWDIPRDPHVGHVPQVVGGVREAACARLLTGFF 146


>gi|149182757|ref|ZP_01861221.1| ComEB [Bacillus sp. SG-1]
 gi|148849523|gb|EDL63709.1| ComEB [Bacillus sp. SG-1]
          Length = 175

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 31/121 (25%)

Query: 31  VACLIVKDGIVIGRGVTA-YGGCP------------------HAEVQALEEA---GEEAR 68
           V   IV+D  +I  G      G                    HAE+ A+ +    G    
Sbjct: 18  VGATIVRDKRIIAGGYNGSIAGGVHCIDEGCYVIDNHCVRTIHAEMNAIIQCAKFGVPTA 77

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           GA  YVT  PC        C + +I+ GI++V    +  +   +   +Q   Q G+ +++
Sbjct: 78  GAEIYVTHFPCLQ------CCKGLIQAGIKKVYYAENYKNHPYA---IQLFQQAGVHIEQ 128

Query: 129 M 129
           +
Sbjct: 129 V 129


>gi|322373694|ref|ZP_08048230.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           sp. C150]
 gi|321278736|gb|EFX55805.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
           sp. C150]
          Length = 151

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 57/157 (36%), Gaps = 37/157 (23%)

Query: 1   MP--VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----- 53
           MP  +S  D  FM+ A   S+     T     V  ++VKD  +I  G             
Sbjct: 1   MPNRLSWQD-YFMANAELISKRS---TCDRAYVGAVLVKDNRIIATGYNGGVSETDNCNE 56

Query: 54  --------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                         HAE+ AL +    G   +    YVT  PC +      C + +++ G
Sbjct: 57  VGHYMEDGHCIRTVHAEMNALIQCAKEGISTKNTEIYVTHFPCIN------CTKALLQAG 110

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
           I ++       + R  G  ++ + QKG+   +    E
Sbjct: 111 IVKITY---KANYRPHGFAMELMQQKGVSYVQHDVPE 144


>gi|327403312|ref|YP_004344150.1| CMP/dCMP deaminase zinc-binding protein [Fluviicola taffensis DSM
           16823]
 gi|327318820|gb|AEA43312.1| CMP/dCMP deaminase zinc-binding protein [Fluviicola taffensis DSM
           16823]
          Length = 148

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 47/153 (30%), Gaps = 33/153 (21%)

Query: 7   DARFMSAALRFSRWH--------VGLTSTNPSVACLIVKDGIVIGRGV--TAYGG--CPH 54
           D  FM  A   ++            +   N            +I R    T        H
Sbjct: 7   DEYFMRQAYMEAQKAFELGEVPVGAVVVVN----------NQIIARAHNLTERLHDVTAH 56

Query: 55  AEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AE+QA+  A E       +  T YVTLEPC        CA  +    + +++    D   
Sbjct: 57  AEMQAITAASEYLGAKYLKDCTLYVTLEPC------VMCAGALYWSQLNKIIFASRDEKR 110

Query: 110 RVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
                  +    K ++    ME E    +  + 
Sbjct: 111 GAGRFQNELYHPKTVVSKGPMEQECAQLMIDFF 143


>gi|294656404|ref|XP_458666.2| DEHA2D04598p [Debaryomyces hansenii CBS767]
 gi|199431447|emb|CAG86805.2| DEHA2D04598p [Debaryomyces hansenii]
          Length = 354

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 45/146 (30%), Gaps = 43/146 (29%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           ++D+ FM  A   +            V C++V+   V+  G                   
Sbjct: 199 TWDSYFMRLA-DLAALRSNCMKR--RVGCVVVRGNRVMATGYNGTPRNLTNCNEGGCSRC 255

Query: 47  TAYGGCP---------HAEVQALEEAGEE-------ARGATAYVTLEPCSHYGRSPPCAQ 90
               G           HAE  AL EAG +          +  Y    PC        C+ 
Sbjct: 256 NQGQGSGAALSTCLCLHAEENALLEAGRDRITGGQTGENSVLYCNTCPCL------TCSI 309

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGL 116
            I++ GI+ VV         +S + +
Sbjct: 310 KIVQSGIKEVVYAQSYSMDILSHKVM 335


>gi|322704161|gb|EFY95759.1| cytidine and deoxycytidylate deaminase [Metarhizium anisopliae
           ARSEF 23]
          Length = 469

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
           RF+  AL  +R  +  T+  P V C++V +G +I +G+ A      G  HAE  A+    
Sbjct: 150 RFIEEALDMARLAL-RTNETP-VGCVLVHNGTIIAKGMNATNVTRNGTRHAEFMAISALL 207

Query: 65  EEAR 68
            E R
Sbjct: 208 SEPR 211


>gi|323340654|ref|ZP_08080906.1| competence protein comEB [Lactobacillus ruminis ATCC 25644]
 gi|323091777|gb|EFZ34397.1| competence protein comEB [Lactobacillus ruminis ATCC 25644]
          Length = 159

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 32/150 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           S++  FM  A+  S      T T  +V  ++V+D  +I  G                   
Sbjct: 7   SWNQYFMLQAILLSLRS---TCTRLAVGAILVRDNRIIAGGYNGSVSGDVHCLDEGCYVV 63

Query: 54  --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE+ A+ +    G    GA  YVT  PC        C + +++ GI+++  
Sbjct: 64  DGHCVRTIHAEMNAVLQCAKFGSGTDGAVIYVTDFPCLQ------CTKMLLQAGIKKIYY 117

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
             +  +   + + L+ L    I    +   
Sbjct: 118 LRNYHNDPYAVKLLK-LKNVEIEQVEVDLE 146


>gi|34810500|pdb|1OX7|A Chain A, Crystal Structure Of Yeast Cytosine Deaminase Apo-Enzyme:
           Inorganic Zinc Bound
 gi|34810501|pdb|1OX7|B Chain B, Crystal Structure Of Yeast Cytosine Deaminase Apo-Enzyme:
           Inorganic Zinc Bound
          Length = 161

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 56/155 (36%), Gaps = 19/155 (12%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCPHAEVQ 58
           S +D +    A   +          P   CLI  KDG V+GRG            H E+ 
Sbjct: 11  SKWDQKGXDIAYEEAALG-YKEGGVPIGGCLINNKDGSVLGRGHNXRFQKGSATLHGEIS 69

Query: 59  ALEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
            LE  G       +  T Y TL PC        C   II  GI R VV     +V    +
Sbjct: 70  TLENCGRLEGKVYKDTTLYTTLSPCDX------CTGAIIXYGIPRCVVG---ENVNFKSK 120

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           G ++L  +G  V  + +   K     ++  + +  
Sbjct: 121 GEKYLQTRGHEVVVVDDERCKKIXKQFIDERPQDW 155


>gi|330991695|ref|ZP_08315645.1| putative cytosine deaminase [Gluconacetobacter sp. SXCC-1]
 gi|329761163|gb|EGG77657.1| putative cytosine deaminase [Gluconacetobacter sp. SXCC-1]
          Length = 280

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 44/120 (36%), Gaps = 19/120 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVI---GRGVTAYGG--CPHAEVQALE 61
             F+  A   +         +P   C++V   G V+   G G TA GG    HAE     
Sbjct: 124 EHFLRRAFAVAERAR-QGGDHP-FGCILVDATGKVVLEQGNGYTAEGGDMTAHAERLLAT 181

Query: 62  EAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A +        G T Y + EPC+       CA  +   GI RVV    + D++      
Sbjct: 182 RASKRFPPAELAGCTMYTSAEPCAM------CAGAVYWAGIGRVVYGQSEHDLKAMTGNH 235


>gi|221064913|ref|ZP_03541018.1| CMP/dCMP deaminase zinc-binding [Comamonas testosteroni KF-1]
 gi|220709936|gb|EED65304.1| CMP/dCMP deaminase zinc-binding [Comamonas testosteroni KF-1]
          Length = 166

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRG--VTAYGG--CPHAEV 57
           ++  D R++  A+  +         N     LIV  DG V+ +        G    HAE+
Sbjct: 9   LNDADGRYLREAIALADTARER--GNRPFGALIVAADGRVLAQASNANGESGDCTAHAEL 66

Query: 58  QALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+  A       E   AT Y + EPC        CA  I    I RVV  +D   +RV 
Sbjct: 67  SAIRLASPLHSRNELAVATLYSSAEPC------VMCAGAIFWSAIGRVVYGIDAERLRVF 120

Query: 113 GRGLQWLSQKGIIVDRMMESEGKI 136
                      +    + ++    
Sbjct: 121 RGERLDQKDAELSCRDVFQAASHA 144


>gi|194291404|ref|YP_002007311.1| guanine deaminase; cytidine and deoxycytidylate deaminase family
           [Cupriavidus taiwanensis LMG 19424]
 gi|193225308|emb|CAQ71250.1| Guanine deaminase; cytidine and deoxycytidylate deaminase family
           [Cupriavidus taiwanensis LMG 19424]
          Length = 155

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 20/112 (17%)

Query: 8   ARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALE 61
             ++  ++R +        T        ++VKDG V+ R V           HAE+QA+ 
Sbjct: 5   EAYLLDSIRLAMENVRERNTWP---FGAVVVKDGTVLARAVNEVDATCDPSAHAEMQAVR 61

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            A       +  G T Y +  PC      P C   +   G+  V     + D
Sbjct: 62  AASRALGKPDLSGCTVYASGYPC------PMCLTAMYLAGVEAVFYAYSNED 107


>gi|152112358|sp|Q92G39|Y1285_RICCN RecName: Full=Uncharacterized deaminase RC1285
          Length = 153

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 11  MSAALRFSRWHVGLTSTN-PSVACLIVK--DGIVIGRGVT----AYGGCPHAEVQALEEA 63
           M  AL+ ++        N   V  ++V      +I               HAE+ A+ EA
Sbjct: 1   MEQALKQAKIAF---DKNEVPVGAVVVDRLHQKIIASTHNNTEEKNNALYHAEIIAINEA 57

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                 +       YVTLEPC+       CA  I    ++R+     D    V    L++
Sbjct: 58  CNLISSKNLNDYDIYVTLEPCAM------CAAAIAHSRLKRLFYGASDSKHGVVESNLRY 111

Query: 119 LSQ 121
            + 
Sbjct: 112 FNS 114


>gi|49473908|ref|YP_031950.1| nitrogen fixation protein [Bartonella quintana str. Toulouse]
 gi|49239411|emb|CAF25749.1| Nitrogen fixation protein [Bartonella quintana str. Toulouse]
          Length = 148

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 48/146 (32%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG--VTAYGGCP--HAEVQALEEA--- 63
           M  AL  ++W          V  +I     +I R          P  HAE++ +  A   
Sbjct: 6   MEIALLEAQWAE--KKDEVPVGAVITHGQSIIARTGNYIKAAYDPTGHAEMRVIRMACET 63

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW--- 118
              E       YVTLEPC+       CA  I    IRR+   + DP       G ++   
Sbjct: 64  FQSERLPDCDLYVTLEPCAM------CAAAISFARIRRLYYAISDPKGGAIEHGPRFYQQ 117

Query: 119 --LSQKGIIVDRMMESEGKIFLHAYL 142
                +  +     E E    L  + 
Sbjct: 118 STCHHRPEVYSGFKEKEAAQLLKDFF 143


>gi|308272937|emb|CBX29541.1| hypothetical protein N47_J05220 [uncultured Desulfobacterium sp.]
          Length = 153

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 49/151 (32%), Gaps = 43/151 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           ++D  FM      ++    L     SV  LIVKD  ++  G                   
Sbjct: 9   AWDTYFMDITTLVAKRSTCLRR---SVGALIVKDKRILSTGYNGAPSGLKHCLEIGCLRE 65

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G   R A  Y T  PCS       CA+ II 
Sbjct: 66  KMKIASGERHELCRGIHAEQNAIIQAAFHGVSIRDAVLYCTNLPCSI------CAKMIIN 119

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            GI ++       D   S    + L + GI 
Sbjct: 120 AGIIKIYYLDGYADAMSS----EMLEEAGIE 146


>gi|159471219|ref|XP_001693754.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158283257|gb|EDP09008.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 143

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 46/131 (35%), Gaps = 22/131 (16%)

Query: 30  SVACLIVK-DG-IVIGRGVTA----YGGCPHAEVQALEEAGEEAR-----GATAYVTLEP 78
            V  ++V  DG  V+  G            HAE+  L      +R     G T YVTLEP
Sbjct: 18  PVGAVLVAADGATVLAAGHNRVHRLRSPLAHAEMLCLAAGAARSRAWRLLGTTLYVTLEP 77

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-----QWLSQKGIIVDRMMESE 133
           C      P CA  +++  + RVV     P +   G               ++    +  E
Sbjct: 78  C------PMCAGALMQARVGRVVYGARQPRLGADGSWAPPPPPHPFHDSIVVEGGCLAEE 131

Query: 134 GKIFLHAYLTR 144
               + A+  R
Sbjct: 132 CADVMRAFFRR 142


>gi|261212850|ref|ZP_05927134.1| deoxycytidylate deaminase [Vibrio sp. RC341]
 gi|260837915|gb|EEX64592.1| deoxycytidylate deaminase [Vibrio sp. RC341]
          Length = 161

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 47/155 (30%), Gaps = 35/155 (22%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPS--VACLIVKDGIVIGRGVTAYGG-------------- 51
            RF   A       VG  S +PS  V  +I K   ++  G   Y                
Sbjct: 7   QRFFQMA-EL----VGSWSKDPSTQVGAVITKQNRIVSVGFNGYPHGISDSASTDDRDMK 61

Query: 52  ---CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                HAE  A+  A  +  G   YVT  PC      P CA  II+ GI  V       D
Sbjct: 62  YLKTLHAEENAILFAKRDLDGCEIYVTHFPC------PNCAAKIIQTGIAAVHCPEQSDD 115

Query: 109 VRVS-----GRGLQWLSQKGIIVDRMMESEGKIFL 138
                            Q G+ V  +   E +   
Sbjct: 116 FLSRWGDKIKVSQDMFLQAGVKVHWLPLLELQHIN 150


>gi|119026595|ref|YP_910440.1| cytidine and deoxycytidylate deaminase [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118766179|dbj|BAF40358.1| possible cytidine and deoxycytidylate deaminase [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 157

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 21/130 (16%)

Query: 30  SVACLIVK-DGIVIGRGV----TAYGGCPHAEVQALEEAGEE-----ARGATAYVTLEPC 79
            V  +++  DG VIGRG     T      HAEV+A+ EA            T  VTLEPC
Sbjct: 32  PVGAVVLAADGRVIGRGRNLRETHADPLAHAEVKAMAEAAASLDTWNLADCTLVVTLEPC 91

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEG 134
                 P CA   ++  I R+V    D  +   G          +     ++  + E+E 
Sbjct: 92  ------PMCAGACLQTHIGRIVFGAWDAKLGACGSVWDIPRDPHVGLVPEVIGGVREAEC 145

Query: 135 KIFLHAYLTR 144
              +  +  R
Sbjct: 146 GRLMTDFFAR 155


>gi|332524178|ref|ZP_08400405.1| bifunctional deaminase-reductase domain protein [Rubrivivax
           benzoatilyticus JA2]
 gi|332107514|gb|EGJ08738.1| bifunctional deaminase-reductase domain protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 225

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 13/131 (9%)

Query: 208 TCRLNGLQEHSPMRIIL--DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
           T RL       P+  ++  D H  L+    ++       + + T N    +      + +
Sbjct: 66  TVRL-------PVSFVIADDHHLTLAGIDHLL--GRCRRLFLATANPAHPVFARQGAEGL 116

Query: 266 NIIYCDCR-DLKKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            I+  D R D  +LL  L    GV  L ++ G  +    +   LVD + L  +  ++G  
Sbjct: 117 EILPFDGRIDFGELLRTLKALHGVERLTIQTGGTLNALLLRQGLVDRVSLVLAPALVGGA 176

Query: 324 GIPSPLEEGYL 334
             P+ ++   L
Sbjct: 177 TTPTLVDGAPL 187


>gi|83648079|ref|YP_436514.1| dihydrofolate reductase [Hahella chejuensis KCTC 2396]
 gi|83636122|gb|ABC32089.1| Dihydrofolate reductase [Hahella chejuensis KCTC 2396]
          Length = 175

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 11/117 (9%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           PV + +  +D  LA    +           D   ++          + + GG  +  SF 
Sbjct: 69  PVWVFSRQEDLKLAPGVERC--------AGDPSTIVAHFRALDYKRVWLVGGGELLASFQ 120

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
              LVD  I+    +++G G    P  +     +F        G    ++   K LC
Sbjct: 121 EEDLVDEYIISYVPVLLGRGIPLFPPVDACARLDFQLAETFSSG---LVQMRYKRLC 174


>gi|20091176|ref|NP_617251.1| cytosine deaminase [Methanosarcina acetivorans C2A]
 gi|19916284|gb|AAM05731.1| cytosine deaminase [Methanosarcina acetivorans C2A]
          Length = 189

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 19/128 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDG--IVIGRGVTA--YGGCP--HAEVQAL 60
           D  FM  A+  ++           +  +I+ +    ++G+G         P  H E  A+
Sbjct: 41  DRNFMRIAVLLAQKS--YDEGGCPIGGVIIDNNTRRIVGKGHNTLVQDNDPYNHGETSAI 98

Query: 61  EEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
            +AG ++    T + TL PC        CA  I      RVVV     DV  +    Q L
Sbjct: 99  RDAGRQDFSNTTIFTTLSPCDV------CATLIYMRQFDRVVVG----DVTNASGNEQML 148

Query: 120 SQKGIIVD 127
            +KG+ VD
Sbjct: 149 HEKGVKVD 156


>gi|159901995|gb|ABX10725.1| cytidine and deoxycytidylate deaminase family protein [uncultured
           planctomycete 13FN]
          Length = 164

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 23/107 (21%)

Query: 11  MSAALRFSRWHVGLTSTNP--SVACLIV--KDGIVIGRGVTA--YGGCPHAEVQALEEA- 63
           M  A+  ++        NP      +IV     +++  GV         HAE+  +    
Sbjct: 10  MRHAIEVAKA-------NPRHPFGAVIVSSASEVIVAEGVNRSSKNPTLHAEIDVINNYA 62

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
              G +    T Y T EPC      P C   I+  G++ +V     P
Sbjct: 63  ASGGTDWHRLTLYTTAEPC------PMCMSAILWSGVKSIVYGTSIP 103


>gi|88809683|ref|ZP_01125190.1| hypothetical protein WH7805_00725 [Synechococcus sp. WH 7805]
 gi|88786433|gb|EAR17593.1| hypothetical protein WH7805_00725 [Synechococcus sp. WH 7805]
          Length = 159

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 38/110 (34%), Gaps = 15/110 (13%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
           +  D   M  A+R  R    +  +      +I KDG V+     +         HAEV A
Sbjct: 3   TDQDRTLMKEAIRLMREAGVVNKSGGPFGAVIAKDGKVVSASGNSVVRDLDPSAHAEVNA 62

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
           +  A +     +  G   Y + E C     +   A      GIR+V    
Sbjct: 63  IRAACKALGTWDLTGCVMYTSCECCPMCYATAYWA------GIRKVFYAA 106


>gi|256826526|ref|YP_003150485.1| deoxycytidylate deaminase [Cryptobacterium curtum DSM 15641]
 gi|256582669|gb|ACU93803.1| deoxycytidylate deaminase [Cryptobacterium curtum DSM 15641]
          Length = 156

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 36/152 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGC----------- 52
           ++D  FM  A+  S+        +  V   I   +  ++  G                  
Sbjct: 10  TWDQFFMGVAIAASQRSK---DPHTQVGACIADTNHRILSVGYNGTPSALNDDDFPWGAS 66

Query: 53  -----------PHAEVQALEEAGEEAR---GATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE  A+       +   GA+AYVTL PC        CA+ +++ GIR
Sbjct: 67  DDPLHDKHSYVVHAEANAVLNYRGSLKDMDGASAYVTLFPCHE------CAKILVQAGIR 120

Query: 99  RVVVCVDDPDVRVSGRG-LQWLSQKGIIVDRM 129
            VV   +  +  +  +  ++     G+   ++
Sbjct: 121 EVVYQDNKYEGTIDNQIAMRIFDDCGVSYRQV 152


>gi|91085973|ref|XP_971753.1| PREDICTED: similar to tRNA-specific adenosine-34 deaminase subunit
           Tad2p/ADAT2, putative [Tribolium castaneum]
          Length = 160

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 49/164 (29%), Gaps = 25/164 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEE 66
           M  A + +     L +    V C+ V +   I  G            HAE+  +E+  + 
Sbjct: 1   MERAFQHAYEA--LAAQEVPVGCIFVHNNTEIAFGRNTVNQTKNATRHAEINCIEQVTDY 58

Query: 67  A-----------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG-- 113
                       +G T +VT+EPC        C   + +  ++ +V    +         
Sbjct: 59  CKTNNFNLIDFFKGVTVFVTVEPCIM------CINALFDLQVQTIVFGCRNDRFGGRTVF 112

Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
                +  K II       E    L  +            +K+ 
Sbjct: 113 DVAGVVHPKTIIKGGFRADEAMNLLKEFYKGVNPSAPPSKVKVR 156


>gi|209694654|ref|YP_002262582.1| hypothetical protein VSAL_I1096 [Aliivibrio salmonicida LFI1238]
 gi|208008605|emb|CAQ78781.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
          Length = 177

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 68/208 (32%), Gaps = 45/208 (21%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPI-----TGFISKNQVHLLRAQSDAILVGIGTVLADD 204
              ++ +A S D  I     G   +         S   V     + DA+++G  T+  D 
Sbjct: 1   MSNSVFMATSLDGYIADKNGGIDWLHTIPNQDQNSMGYVEYF-DRIDAMVMGRNTL--DM 57

Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
                             +L           +   +     +     D            
Sbjct: 58  ------------------VLGFGVDWPYSKPVFVLSNTMTSVPAGYEDK----------- 88

Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
              I+     LK+++  +  +G   L ++GG     SF+   L+D +I+    +++G G 
Sbjct: 89  ---IFLVKGPLKEVIKGINEQGFEHLYIDGGVT-IQSFLKEDLIDEMIITTIPVLLGGG- 143

Query: 325 IPSPL-EEGYLEKNFMCVRRDYFGSDVC 351
             SPL  +     NF  V+ + F + + 
Sbjct: 144 --SPLFGDLNAPLNFKFVKNEVFLNAIV 169


>gi|94985175|ref|YP_604539.1| CMP/dCMP deaminase, zinc-binding [Deinococcus geothermalis DSM
           11300]
 gi|94555456|gb|ABF45370.1| CMP/dCMP deaminase, zinc-binding protein [Deinococcus geothermalis
           DSM 11300]
          Length = 187

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 44/113 (38%), Gaps = 22/113 (19%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV----------TAYGGC-PHAEV 57
           ++  ALR +R      S    V  ++V   G VI RG                   HAE+
Sbjct: 19  YLQEALRLAREAQAAGSA--PVGAVLVNAAGEVIARGRNRVGEAQTPEHVGAASVAHAEM 76

Query: 58  QALEEAGE--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                 G+  +A   T Y +LEPC   G     A  ++E G  RVV   DDP 
Sbjct: 77  DVFFSVGKVQDAATLTLYTSLEPCLMCGG----AAALLEVG--RVVWATDDPW 123


>gi|328767193|gb|EGF77244.1| hypothetical protein BATDEDRAFT_14312 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 353

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 51/159 (32%), Gaps = 49/159 (30%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           ++D  FM      +            V C++V +  VI  G     G P           
Sbjct: 194 NWDTYFMELC-DLAARRSNCMKR--RVGCILVNNRRVIATGY---NGTPRGIRNCNDGGC 247

Query: 54  -------------------HAEVQALEEAG-EEARGA---TAYVTLEPCSHYGRSPPCAQ 90
                              HAE  AL EAG E   G+   T Y     C   G    CA+
Sbjct: 248 QRCNSNASCGSQLDTCLCLHAEENALLEAGRERISGSGHTTLYCN--TCPCLG----CAK 301

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            I++ G++ VV         +       L + G+++ + 
Sbjct: 302 KIVQVGVKEVVFLNSYS---MDEMTAALLREGGVVLRQH 337


>gi|149538332|ref|XP_001507477.1| PREDICTED: similar to DEADC1 protein, partial [Ornithorhynchus
           anatinus]
          Length = 121

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 21/104 (20%)

Query: 30  SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA-----------GEEARGATAYV 74
            V CL+V +  ++G G            HAE+ A+++             E  +    YV
Sbjct: 11  PVGCLMVYNNKIVGMGRNEVNETKNATRHAEMVAIDQVLNWCLRRGKNPTEVFQRTVLYV 70

Query: 75  TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           T+EPC        CA  +    I  VV    +      G  L  
Sbjct: 71  TVEPCIM------CAAALRIMRIPLVVYGCQNERFGGCGSVLNI 108


>gi|220932754|ref|YP_002509662.1| pyrimidine reductase, riboflavin biosynthesis [Halothermothrix
           orenii H 168]
 gi|219994064|gb|ACL70667.1| pyrimidine reductase, riboflavin biosynthesis [Halothermothrix
           orenii H 168]
          Length = 321

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 80/236 (33%), Gaps = 55/236 (23%)

Query: 142 LTRQVEKRSHITLKIAVSQDNMIG---------MAGCGSVPITGFISKNQV-HLLRAQSD 191
             R  + R         S D  I          +A    +   G  +   V ++LRA  D
Sbjct: 46  FDRIPDDRPLTLASFVTSLDGKIAFEDAPEGPFIAQKNFLDPDGAGADFWVLNMLRANCD 105

Query: 192 AILVGIGTV--LAD------DPEL-TCRLNGLQEHSPMRII--LDPHFKLSLDSKIIKTA 240
            ILVG GT+   AD      D EL   R+    +  P+ I+  LD    +  D K+ K A
Sbjct: 106 GILVGAGTMQEEADMTAHVFDQELEDARVEAGLDEVPLNIVASLDGR-DIPFDHKLFK-A 163

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINII-------YCDCRDLKKLLTILVGR-------- 285
              PV I T            K+ + II         D  ++ +    L  +        
Sbjct: 164 PEVPVAIFTSPSGMEWVKENFKEPVEIIGPYNSLEEIDKEEVTRGFKALGEKVPVIVTGS 223

Query: 286 ----------------GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
                           G+  LLVE      H  I ++L+D + L  S I IG   +
Sbjct: 224 KQTTNSEVFLKVLRLAGIEKLLVES-PTYTHHLIKNKLLDEMFLNYSCIYIGGKAL 278


>gi|264677000|ref|YP_003276906.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
           CNB-2]
 gi|262207512|gb|ACY31610.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
           CNB-2]
          Length = 162

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 16/118 (13%)

Query: 1   MPVSSFDARFMSAALRFS-RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
           M   +   +++  ++R +     G          ++V++G V+ R V           HA
Sbjct: 1   MNNENDSGKYLLESIRLAMGNVKGRQQPTWPFGAVLVRNGQVLARAVNQVDELCDPSAHA 60

Query: 56  EVQALE-----EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           E+QAL      +   +  GA  Y +  PCS       C   ++  G+++V     + D
Sbjct: 61  EMQALRIGAKAQGSTDLSGAVMYASGYPCSM------CYTAMLLAGVKQVYFAYSNED 112


>gi|298345726|ref|YP_003718413.1| nucleoside deaminase [Mobiluncus curtisii ATCC 43063]
 gi|298235787|gb|ADI66919.1| nucleoside deaminase [Mobiluncus curtisii ATCC 43063]
          Length = 180

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 44/123 (35%), Gaps = 21/123 (17%)

Query: 13  AALR----FSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-----GGCPHAEVQALEEA 63
            AL      ++   G     P  A ++  +GIV G G+            HAE+ AL EA
Sbjct: 35  RALDTAYGLAQKA-GRAGDIPVGAVVLTPEGIVAGLGLNQRENPPYDPSAHAEIVALREA 93

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                    +G T   TLEPC        CA  I+   I R++    DP     G     
Sbjct: 94  AGRLERWNLKGCTLVATLEPC------TMCAGAIVNARISRLIFGAWDPKAGACGSIRDV 147

Query: 119 LSQ 121
           +  
Sbjct: 148 VRD 150


>gi|170117507|ref|XP_001889940.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164635076|gb|EDQ99389.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 153

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 25/157 (15%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAE--------- 56
            DA+ M  A+  ++  +G       +  +++        G     G  H E         
Sbjct: 1   MDAQGMILAISEAQ--MGHKQGGIPIGSVLLLPNESDAEGTFTLLGSGHNERIQKSSPTL 58

Query: 57  VQALEEAG----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           + ALE AG    E  R +T Y TL PCS       C+  I+   I RVV+  ++  +   
Sbjct: 59  ISALENAGRLSPEVYRKSTIYTTLSPCSM------CSGAILLYKIPRVVIGENETFLGEE 112

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
               + L  +G+ V  +   E K  +  ++    +  
Sbjct: 113 ----ELLRSRGVEVVVLDNEECKDIMRRFIQEMPQAW 145


>gi|73539205|ref|YP_299572.1| cytidine/deoxycytidylate deaminase, zinc-binding region [Ralstonia
           eutropha JMP134]
 gi|72122542|gb|AAZ64728.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Ralstonia
           eutropha JMP134]
          Length = 152

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 43/131 (32%), Gaps = 25/131 (19%)

Query: 5   SFDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           +     M  A+  +    R              ++  DG  +  G    V ++    HAE
Sbjct: 2   ATHEHLMREAVELAVTNLRRGGR------PFGAVLAIDGEAVATGVNDIVHSHDPTTHAE 55

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           ++A+  A       +  G+  Y +  PC      P C   +   G++ V    D+ D   
Sbjct: 56  MEAVRAAARKLGRPDLSGSVVYASGHPC------PMCLAAMTMAGVQAVYYAFDNNDAAP 109

Query: 112 SGRGLQWLSQK 122
            G   +   Q 
Sbjct: 110 YGLSSEAAYQA 120


>gi|299529821|ref|ZP_07043254.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
           S44]
 gi|298722235|gb|EFI63159.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
           S44]
          Length = 146

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 17/108 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE---- 62
           M  A+  +  +            ++ +   V+  GV      +    HAE+QA+      
Sbjct: 1   MRLAVDLAHANRLQGGR--PFGAVLAQGNEVVATGVNEIIVSHDPSTHAEMQAIRAGTQK 58

Query: 63  -AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
            A     G + Y +  PC      P C   ++  G  +V    D+ D 
Sbjct: 59  RANPSLAGLSIYASGHPC------PMCLAALVMNGAEQVFFAFDNQDA 100


>gi|254525381|ref|ZP_05137433.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Prochlorococcus marinus str. MIT 9202]
 gi|221536805|gb|EEE39258.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Prochlorococcus marinus str. MIT 9202]
          Length = 216

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 12/168 (7%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
                IT+ +A S D  I     G   +     +  +    +  DA + G+GT+ A +  
Sbjct: 1   MSIPRITIVVASSLDGRIAFPEGGESHLGSEEDRKILDQNLSMVDATIFGLGTLKAHEST 60

Query: 207 LTC----RLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
                  R N  +  +  P+ I+     K + + K  +  +    +I +   D      F
Sbjct: 61  YLIKNHNRNNEAKISKSQPISIVASNSKKFNSNWKYFRQPIR-RWLISSSKVDNSSNNDF 119

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
            K+            KK L  L  +G+  L + GGA + +SFI   L+
Sbjct: 120 EKQ-----LFFEDSWKKTLISLKKQGINDLALLGGAQLINSFIKEDLI 162


>gi|256786485|ref|ZP_05524916.1| deaminase [Streptomyces lividans TK24]
          Length = 151

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 17/104 (16%)

Query: 30  SVACLIVK-DGI-VIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEP 78
            V  +++  DG  V+  G            HAEV A+  A          G T  VTLEP
Sbjct: 26  PVGAVVLAPDGRTVLSAGHNEREATGDPTAHAEVLAIRRAAGELGEWRLSGCTLVVTLEP 85

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           C        CA  +++  + RVV    D     +G     +  +
Sbjct: 86  C------TMCAGALVQSRVDRVVYGARDDKAGAAGSLWDVVRDR 123


>gi|297192826|ref|ZP_06910224.1| cytidine/deoxycytidine deaminase [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197722375|gb|EDY66283.1| cytidine/deoxycytidine deaminase [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 149

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 19/139 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY--GGCP--HAEVQALEEAG 64
           +++ A+  +R   GL      +   +   DG ++GRG       G P  HAE +A   AG
Sbjct: 9   WLATAVAEAR--AGLAEGGIPIGAALYGADGTLLGRGHNRRVQDGDPSAHAETEAFRAAG 66

Query: 65  EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
            +   RG T   TL PC +      C+  + + GI RVV+     +      G  WL+  
Sbjct: 67  RQRSYRGTTMVTTLSPCWY------CSGLVRQFGISRVVIG----ETETFHGGHDWLAAN 116

Query: 123 GIIVDRMMESEGKIFLHAY 141
           G+ +  + +   +  +  +
Sbjct: 117 GVEIVLLDDPACRSMMRDF 135


>gi|149191235|ref|ZP_01869491.1| deoxycytidylate deaminase [Vibrio shilonii AK1]
 gi|148834905|gb|EDL51886.1| deoxycytidylate deaminase [Vibrio shilonii AK1]
          Length = 147

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 50/149 (33%), Gaps = 31/149 (20%)

Query: 9   RFMSAALRFSRWHVGLTSTNPS--VACLIVKDGIVIGRGVTAYGG--------------- 51
           ++    ++ +   VG  S +PS  V  +I K+  ++  G   Y                 
Sbjct: 4   KWAKRFIQMAEL-VGSWSKDPSTQVGAVITKNNRIVSVGFNGYPHGISDSAEVDERETKY 62

Query: 52  --CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD- 108
               HAE  A+  A  +  G   +VT  PC      P CA  II+ GI  V       D 
Sbjct: 63  LKTLHAEENAILFAKRDLDGCEIWVTHFPC------PNCAAKIIQTGISVVHCPQQTEDF 116

Query: 109 ----VRVSGRGLQWLSQKGIIVDRMMESE 133
                           Q G+ V+ +   +
Sbjct: 117 LSRWGEKISLSQDMFEQAGVHVNWLPLEQ 145


>gi|92118729|ref|YP_578458.1| CMP/dCMP deaminase, zinc-binding [Nitrobacter hamburgensis X14]
 gi|91801623|gb|ABE63998.1| CMP/dCMP deaminase, zinc-binding protein [Nitrobacter hamburgensis
           X14]
          Length = 211

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 9/97 (9%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           ++  D + MS A+   R    +  T      ++V+DG V+     +         HAEV 
Sbjct: 54  ITEQDRKHMSLAILTMRQAGVVDKTGGPFGAVVVRDGEVLAASGNSVLRDNDPSAHAEVN 113

Query: 59  ALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQ 90
           A+  A ++      RGAT + + E C     +   A+
Sbjct: 114 AIRIACKKIGAPNLRGATLFTSCECCPMCYATAYWAR 150


>gi|242217142|ref|XP_002474373.1| predicted protein [Postia placenta Mad-698-R]
 gi|220726480|gb|EED80428.1| predicted protein [Postia placenta Mad-698-R]
          Length = 272

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 52/153 (33%), Gaps = 38/153 (24%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP--- 53
           +DA FM  A   +            V  ++V++  ++  G             GGC    
Sbjct: 131 WDAYFMQLA-ELASERSNCMKR--RVGAILVRNKRILATGYNGTPRGLTNCNEGGCTRCN 187

Query: 54  ------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                       HAE  AL EAG E    GA  Y    PC        C   II+ G++ 
Sbjct: 188 SGKEASDECVCLHAEENALLEAGRERVGDGAVLYCNTCPCLK------CTIKIIQTGVKE 241

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
           VV  +     +V        S+ G+++ R    
Sbjct: 242 VVYNLSY---KVDDSSAALFSEAGVVLRRHSMP 271


>gi|158319799|ref|YP_001512306.1| deaminase-reductase domain-containing protein [Alkaliphilus
           oremlandii OhILAs]
 gi|158139998|gb|ABW18310.1| bifunctional deaminase-reductase domain protein [Alkaliphilus
           oremlandii OhILAs]
          Length = 175

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 2/93 (2%)

Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
           +++   +    +D+      L  +   ++ + GG+ +   FI  +LVD +I+  + +++G
Sbjct: 81  REDTEYVTFVNKDIVSFSKELKNKNGKNIWLMGGSELISDFILEKLVDEVIVTIAPVLLG 140

Query: 322 EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
             GIP    E  ++        + F   V L Y
Sbjct: 141 S-GIP-LFRENNVQTLLRLNSINRFNQFVELRY 171


>gi|33593821|ref|NP_881465.1| hypothetical protein BP2880 [Bordetella pertussis Tohama I]
 gi|33563894|emb|CAE43152.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|332383223|gb|AEE68070.1| hypothetical protein BPTD_2832 [Bordetella pertussis CS]
          Length = 169

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 23/116 (19%)

Query: 4   SSFDARFMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
           +  D   +  A+  +R      G          L+ KDG+V+ RGV      +    H E
Sbjct: 13  TPDDDALLREAIALARANARAGGR-----PFGALVAKDGVVLARGVNRMLADHDPTAHTE 67

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           + AL EAG   R     G   Y + +PC      P C   +   G+ R V    + 
Sbjct: 68  LLALREAGRALRSARLDGCVVYASGQPC------PMCLAAMRMSGVARAVYAYSNE 117


>gi|294933962|ref|XP_002780922.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239891069|gb|EER12717.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 294

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 42/117 (35%), Gaps = 16/117 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEV 57
            ++  D  FM+AA   +   V L    P     +V+DG+ I               HAEV
Sbjct: 14  TITKVDECFMTAACMSATAGVILRHGGP-FGAAVVRDGMPISCAHNTVLYNKDPTCHAEV 72

Query: 58  QALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
            A+  A       E      Y + EPC      P C   I+  G++ + V  D    
Sbjct: 73  NAIRHAVRHLGRSELSDCVLYTSCEPC------PMCWGAIMASGLKVMYVGADRYCA 123


>gi|119188441|ref|XP_001244827.1| hypothetical protein CIMG_04268 [Coccidioides immitis RS]
          Length = 160

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 48/149 (32%), Gaps = 38/149 (25%)

Query: 30  SVACLIVKDGIVIGRGVTA---------YGGCP------------------HAEVQALEE 62
            V C++VKD  V+  G             GGCP                  HAE  AL E
Sbjct: 17  RVGCVLVKDRRVMSTGYNGTARNTRNCNQGGCPRCNLVQGTAQALSTCLCLHAEENALLE 76

Query: 63  AGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           AG E    G   Y    PC        C+  I + GI  VV         +       L 
Sbjct: 77  AGRERIGEGCILYCNTCPCL------TCSVKIAQLGISEVVYSQAY---DMDRETAAILE 127

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           + G+ + +       +    ++ +Q   +
Sbjct: 128 EAGVKLRQFSPPCNGLIDIRFMFKQSCIQ 156


>gi|256847243|ref|ZP_05552689.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256715907|gb|EEU30882.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 236

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 5/111 (4%)

Query: 222 IILDPHFKLSLDSKIIK-TALLAPVI-IVTENDDPVLALAFRKKNINIIYCDCRDL--KK 277
           I  D H +   +    +     +  I ++T+          R   I  + C  RDL   +
Sbjct: 92  ISFDRHGRAGWERNYFEYGGKKSRAIEVLTKQASKAYLAFLRSMEIPYLICGERDLDLHE 151

Query: 278 LLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
            L  L    G+ ++ + GGA +  +F+ + LVD I L  +  V G+    S
Sbjct: 152 ALVKLKRYFGLDAIALCGGATIDGAFLQAGLVDEISLVVAPFVSGDNATQS 202


>gi|224125580|ref|XP_002319621.1| predicted protein [Populus trichocarpa]
 gi|222857997|gb|EEE95544.1| predicted protein [Populus trichocarpa]
          Length = 186

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 18/110 (16%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-----AYGGCPHAEV 57
           V   D +F+S A+  +   V      P    ++V++  V+                HAEV
Sbjct: 27  VQDRDHKFLSRAVEEAYKGVECGDGGP-FGAVVVRNDEVV-MSCHNMVLKNTDPTAHAEV 84

Query: 58  QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
             + EA ++           Y + EPC      P C   I    ++R+V 
Sbjct: 85  TVIREACKKLNRIELSDCEIYASCEPC------PMCFGAIHLSRLKRLVY 128


>gi|167625262|ref|YP_001675556.1| zinc-binding CMP/dCMP deaminase [Shewanella halifaxensis HAW-EB4]
 gi|167355284|gb|ABZ77897.1| CMP/dCMP deaminase zinc-binding [Shewanella halifaxensis HAW-EB4]
          Length = 143

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 26/116 (22%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----------- 51
           ++ +  RF+  A   + W       +  V  +I +D  ++  G   Y             
Sbjct: 2   MTKWATRFLQMAELVASWSK---DPSTQVGAVITEDNRIVSLGFNGYPHGISDSAETDNR 58

Query: 52  ------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                   HAE  A+  A  +  G   +VT  PC      P CA  II+ G+  V 
Sbjct: 59  EMKLLKTLHAEENAILYAKRDLSGCEIWVTHFPC------PNCAAKIIQTGLSTVH 108


>gi|85118833|ref|XP_965519.1| hypothetical protein NCU01888 [Neurospora crassa OR74A]
 gi|28927329|gb|EAA36283.1| predicted protein [Neurospora crassa OR74A]
          Length = 674

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 49/134 (36%), Gaps = 19/134 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL----- 60
           FM  AL  +R  +  T+  P V C++V    VI RG+ A      G  HAE+ A+     
Sbjct: 333 FMREALDMARLAL-KTNETP-VGCVLVYKDRVIARGMNATNVSRNGTRHAELMAICALLS 390

Query: 61  --EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
              +A  E +        +  S +G   P    +   G +        P  RV    +  
Sbjct: 391 YSGDADLEPKNVQPQCNHDEPSVWGDVDPRDGHLFPYGQKL------HPAPRVDRSVISE 444

Query: 119 LSQKGIIVDRMMES 132
            +    +   +M +
Sbjct: 445 CTLYVTVEPCVMCA 458


>gi|281492558|ref|YP_003354538.1| dihydrofolate reductase family protein [Lactococcus lactis subsp.
           lactis KF147]
 gi|281376222|gb|ADA65713.1| Dihydrofolate reductase family protein [Lactococcus lactis subsp.
           lactis KF147]
          Length = 173

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           N+++ D   L +L           + V GG  V   F+ +  VD + +  + +++G+ GI
Sbjct: 84  NVVFIDKEKLTELSVNFADTDKN-IWVVGGGEVIKLFLENHWVDELQVTIAPVLLGD-GI 141

Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           P      Y EK    +    +G  V L Y+ K
Sbjct: 142 PLFPSGNYKEK-LQLIDTKTYGQFVELHYLVK 172


>gi|320592583|gb|EFX05013.1| tRNA-specific adenosine deaminase [Grosmannia clavigera kw1407]
          Length = 684

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEV 57
           P+      +M+ A+  ++  +  T+  P V C++V +G VI +G+ A      G  HAE+
Sbjct: 309 PIKRLHRGYMNEAVAMAQLAL-RTNETP-VGCVLVHNGRVIAKGMNATNMTRNGTRHAEL 366

Query: 58  QALEE 62
             L  
Sbjct: 367 MCLNA 371


>gi|188589366|ref|YP_001919994.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188499647|gb|ACD52783.1| guanine deaminase [Clostridium botulinum E3 str. Alaska E43]
          Length = 157

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 43/156 (27%), Gaps = 20/156 (12%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE- 65
           M   ++  +  +      P     IVKD  +I       +       H E+ A+ +A   
Sbjct: 7   MDLCVKQCKEGMLNLEGGP-FGAAIVKDSKIIALANNTVIKDNDPTAHGEMNAIRQACNK 65

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR----VSGRGLQ 117
               +  G   Y T EPC      P C   II   I +V       D           L+
Sbjct: 66  LSTFDLSGCELYTTSEPC------PMCMSAIIWSNISKVYYGCTVKDAADIGFRDEHILE 119

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHIT 153
           +L         +   +                 + T
Sbjct: 120 FLKGNCTNKKVLDLEQIDKSNCMAAFEMWTNSQNKT 155


>gi|157374292|ref|YP_001472892.1| putative riboflavin biosynthesis protein RibD [Shewanella sediminis
           HAW-EB3]
 gi|157316666|gb|ABV35764.1| putative riboflavin biosynthesis protein RibD [Shewanella sediminis
           HAW-EB3]
          Length = 74

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 38/68 (55%)

Query: 57  VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           ++AL          TAYVTLE  S  GR+P CA  +++ GI+  V  + D D R  G+G+
Sbjct: 1   MEALNAYSGSMSEVTAYVTLENGSFVGRTPACAITLVKLGIKNAVASIQDRDPRNIGKGI 60

Query: 117 QWLSQKGI 124
           Q L  +G+
Sbjct: 61  QILESRGV 68


>gi|28572531|ref|NP_789311.1| hypothetical protein TW378 [Tropheryma whipplei TW08/27]
 gi|28410663|emb|CAD67049.1| conserved hypothetical protein [Tropheryma whipplei TW08/27]
          Length = 231

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 64/179 (35%), Gaps = 24/179 (13%)

Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203
            +  K   I      S    +    C S  ++    +  +H +R  +DA+ VG  T   +
Sbjct: 13  YKFPKDDWICANYIQSFSGNLNSDNCTSDTLSNPRDRMILHTIREANDAVFVGARTARVE 72

Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
           +           ++ P+ I+L           +   +     I++               
Sbjct: 73  N--------ISVKNKPL-IVLTNSG------NLGGISANRNTIVIAPKTTETQIRHTIGA 117

Query: 264 NINIIYCDCR-DL---KKLLTILVGR-----GVTSLLVEGGAAVAHSFINSRLVDSIIL 313
           ++N+I+ D   D+    + + +L+ +     G   ++ EGG  +    +++  +D + +
Sbjct: 118 SVNVIWLDNFGDITRYSQTMGVLIAKAVKSLGFKRIVCEGGLTLIRMLLSAGAIDELCI 176


>gi|39996786|ref|NP_952737.1| cytidine/deoxycytidylate deaminase family protein [Geobacter
           sulfurreducens PCA]
 gi|39983674|gb|AAR35064.1| cytidine/deoxycytidylate deaminase family protein [Geobacter
           sulfurreducens PCA]
 gi|298505797|gb|ADI84520.1| deoxycytidylate deaminase [Geobacter sulfurreducens KN400]
          Length = 154

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 44/138 (31%), Gaps = 39/138 (28%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
           M   ++D  FM      ++    L      V  +IVKD  ++  G               
Sbjct: 1   MTRPTWDEYFMEITHLVAKRSTCLRR---QVGAVIVKDKNILATGYNGAPSGVAHCLDVG 57

Query: 47  -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE  A+ +A   G    G T Y T  PC        C++
Sbjct: 58  CLRERLGIPSGERHELCRGLHAEQNAIIQAAKHGTNIDGGTLYCTTMPCII------CSK 111

Query: 91  FIIECGIRRVVVCVDDPD 108
            +I  GIRR+V      D
Sbjct: 112 MLINAGIRRIVYEEGYSD 129


>gi|317123562|ref|YP_004097674.1| tRNA-adenosine deaminase [Intrasporangium calvum DSM 43043]
 gi|315587650|gb|ADU46947.1| tRNA-adenosine deaminase [Intrasporangium calvum DSM 43043]
          Length = 190

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 46/130 (35%), Gaps = 21/130 (16%)

Query: 30  SVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
            V  +++  DG+VIGRG            HAEV AL  A          GAT  VTLEPC
Sbjct: 40  PVGAVVIGSDGLVIGRGRNVREELGDPTGHAEVIALRSAAAAVGTWRLDGATLAVTLEPC 99

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS-----QKGIIVDRMMESEG 134
                   CA   I   + R+V    DP     G             +  +V  +   E 
Sbjct: 100 ------VMCAGAAIAARVERIVFGAWDPKAGACGSVWDLTRDPLATHRADVVGGVRAEEA 153

Query: 135 KIFLHAYLTR 144
              L  +  R
Sbjct: 154 ATLLVDFFER 163


>gi|225873364|ref|YP_002754823.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Acidobacterium capsulatum ATCC 51196]
 gi|225793789|gb|ACO33879.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Acidobacterium capsulatum ATCC 51196]
          Length = 164

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 15/101 (14%)

Query: 30  SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  + V +G ++ RG            HAE+  L  A E        G   YVTLEPC+
Sbjct: 40  PVGAVAVVEGSILARGQNRVLRDVDPTAHAEMVVLRAAAEAIGNYRLTGCELYVTLEPCA 99

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                  CA  ++   + R+V    DP    +G  L  ++ 
Sbjct: 100 M------CAGAMVHARLARLVYGASDPKAGAAGSVLAVVNH 134


>gi|32453705|ref|NP_861914.1| deoxycytidylate deaminase [Enterobacteria phage RB69]
 gi|32350524|gb|AAP76123.1| Cd dCMP deaminase [Enterobacteria phage RB69]
          Length = 169

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 37/150 (24%), Gaps = 68/150 (45%)

Query: 31  VACLIVKDGIVIGRGV-------------------------------------------- 46
           V  +I KDG +I  G                                             
Sbjct: 24  VGAVIEKDGRIISTGYNGSPAGGVNCCEHASENGWLKNKSSPAIVAGHKEGTTAFGRADN 83

Query: 47  ------TAYGGCP-------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE+ A+      G    GAT Y TL PC      P C +
Sbjct: 84  FVLAKEHRAAHSAWSANNEIHAELNAILFAARKGNSIEGATLYTTLSPC------PDCTK 137

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
            I + GI++VV        R        L 
Sbjct: 138 AITQSGIKKVVYAELYN--RSPENWADILK 165


>gi|319408052|emb|CBI81706.1| Cytosine/adenosine deaminase [Bartonella schoenbuchensis R1]
          Length = 161

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 59/174 (33%), Gaps = 27/174 (15%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGR--GVTAYGGCP--HAE 56
           M ++      M  AL  ++           V  +I++   +I R    T     P  HAE
Sbjct: 1   MSLTP-----MEIALLEAQLAAKQDE--IPVGAVIMRGKTIIARVGNYTKTVCDPTGHAE 53

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           ++A+  A E  +         YVTLEPC+       CA  I    IRR+     DP    
Sbjct: 54  IRAIRIACEILQSERIPDCDLYVTLEPCAM------CAAAISFARIRRLYYATSDPKGGA 107

Query: 112 SGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
              G ++           +     E E    L  +  ++  ++  +      + 
Sbjct: 108 IEHGPRFYQQPTCHHIPEVYSGFKEKEASHLLKEFFAQKRNQKHSLLSPQTPTL 161


>gi|258517245|ref|YP_003193467.1| ComE operon protein 2 [Desulfotomaculum acetoxidans DSM 771]
 gi|257780950|gb|ACV64844.1| ComE operon protein 2 [Desulfotomaculum acetoxidans DSM 771]
          Length = 154

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 52/153 (33%), Gaps = 34/153 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC-------- 52
           M   S+   FM  A   +           SV CLIV+D   I  G               
Sbjct: 1   MKRISWHEYFMGQAKIIALRSSCSRL---SVGCLIVRDRRSIAGGYNGSVSGDVHCLDDG 57

Query: 53  -----------PHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE  A+ +    G    G   YVT  PC +      CA+ II+ GIR
Sbjct: 58  CRIDNGHCVRCVHAEANAIVQCAKFGASTEGTDIYVTHFPCLN------CAKLIIQAGIR 111

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
            V    D    R+    ++  +  G+ V ++  
Sbjct: 112 HVYYEQDY---RIDPYCMELFNLVGVKVTKITC 141


>gi|312137792|ref|YP_004005128.1| cmp/dcmp deaminase [Rhodococcus equi 103S]
 gi|325676107|ref|ZP_08155789.1| cytidine and deoxycytidylate deaminase [Rhodococcus equi ATCC
           33707]
 gi|311887131|emb|CBH46440.1| CMP/dCMP deaminase [Rhodococcus equi 103S]
 gi|325553147|gb|EGD22827.1| cytidine and deoxycytidylate deaminase [Rhodococcus equi ATCC
           33707]
          Length = 152

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 48/130 (36%), Gaps = 22/130 (16%)

Query: 30  SVACLIVK-DGIVIGRGVTAYGGC----PHAEVQALEEA------GEEARGATAYVTLEP 78
            V  ++   DG+ + R   A         HAE+ AL  A      G    GAT  VTLEP
Sbjct: 26  PVGAVVFDADGVELARAANAREATGDPTAHAEILALRAAARVHGDGWRLEGATLAVTLEP 85

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESE 133
           C        CA  ++   + RVV    +P     G     +  + +     +   ++E E
Sbjct: 86  C------TMCAGALVLARVERVVFGAWEPKTGAVGSLWDVVRDRRLTHRPQVRGGVLEGE 139

Query: 134 GKIFLHAYLT 143
               L ++  
Sbjct: 140 CAGILESFFQ 149


>gi|45198541|ref|NP_985570.1| AFR023Wp [Ashbya gossypii ATCC 10895]
 gi|44984492|gb|AAS53394.1| AFR023Wp [Ashbya gossypii ATCC 10895]
          Length = 300

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 55/160 (34%), Gaps = 38/160 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------------- 48
           ++D  FM  A R +            V C+IV+   VI  G                   
Sbjct: 151 AWDVYFMQLA-RLAASRSNCMKR--RVGCVIVRACRVIATGYNGTPRHLRNCHDGGCARC 207

Query: 49  -YGGCP-------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
             GG         HAE  AL EAG E    GA  Y    PC        C+  I++ GI 
Sbjct: 208 NGGGSALHTCLCLHAEENALLEAGRERVGEGAVLYCDTCPCL------TCSVKIVQTGIT 261

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138
            VV        R+     + L   G+ V ++ ++    FL
Sbjct: 262 EVVYSQTY---RMDSDSFKVLRAGGVKVRQLQDAVPPHFL 298


>gi|313844171|ref|YP_004061834.1| hypothetical protein OlV1_202 [Ostreococcus lucimarinus virus OlV1]
 gi|312599556|gb|ADQ91578.1| hypothetical protein OlV1_202 [Ostreococcus lucimarinus virus OlV1]
          Length = 136

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 27/122 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           S++  FM  A   +         N  V C++VK+  +I  G   + G             
Sbjct: 6   SWNEYFMKTA-ELASVRSPCDRLN--VGCVLVKNNRLISMGYNGFLGGSNHTSIVRDGHE 62

Query: 54  ----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               HAE+ A+ +A   G    G  AY+T  PC +      C + +   G++++    D 
Sbjct: 63  QATIHAEINAVTDAAKRGVSIDGTEAYITHYPCLN------CYKALASSGVKKIHYKNDY 116

Query: 107 PD 108
            +
Sbjct: 117 KN 118


>gi|269960107|ref|ZP_06174484.1| deoxycytidylate deaminase, putative [Vibrio harveyi 1DA3]
 gi|269835406|gb|EEZ89488.1| deoxycytidylate deaminase, putative [Vibrio harveyi 1DA3]
          Length = 152

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 52/156 (33%), Gaps = 31/156 (19%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------- 53
           +S ++ RF   A   + W       +  V  +I K+  ++  G   Y             
Sbjct: 2   ISKWEKRFYQMAELVASWSK---DPSTQVGAVITKNNRIVSVGFNGYPHGVSDSVDTDER 58

Query: 54  --------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                   HAE  A+  +  +  G   +VT  PC      P CA  II+ GI RV     
Sbjct: 59  ELKYLKTLHAEENAILFSKRDLDGCDIWVTHFPC------PNCAAKIIQTGIARVSCPEQ 112

Query: 106 DPDVRVS-----GRGLQWLSQKGIIVDRMMESEGKI 136
             D                 Q G+ V+ +  SE + 
Sbjct: 113 SEDFLSRWGDKIQVSQDMFDQAGVEVNWLPISEIEE 148


>gi|152981801|ref|YP_001353377.1| hypothetical protein mma_1687 [Janthinobacterium sp. Marseille]
 gi|151281878|gb|ABR90288.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 150

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 21/118 (17%)

Query: 3   VSSFDARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           + S   +F+  A+R ++     G          ++   G  I  GV     +     HAE
Sbjct: 1   MPSNHEKFLREAVRLAQDNKARGGR----PFGAVLAVGGESIAIGVNNIVHSNDPTTHAE 56

Query: 57  VQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           ++A+  A ++      +G+  Y +  PC      P C   ++  G+  V    D+ D 
Sbjct: 57  MEAIRVASQKLGRPNLKGSVIYASGHPC------PMCLAAMLLTGVDEVYYAFDNNDA 108


>gi|262047267|ref|ZP_06020225.1| dCMP deaminase [Lactobacillus crispatus MV-3A-US]
 gi|260572512|gb|EEX29074.1| dCMP deaminase [Lactobacillus crispatus MV-3A-US]
          Length = 159

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 55/144 (38%), Gaps = 34/144 (23%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------------- 53
             FM  AL  ++      +    V  ++VK+  +IG G      G P             
Sbjct: 9   QYFMMQALVIAQRSTCNRA---LVGSVLVKNNRIIGTGYNGSVSGQPHCDDVGHQMVDGH 65

Query: 54  -----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                H+E+ A+ +    G        YVT  PC +      C + +++ G++++    D
Sbjct: 66  CVRTIHSEMNAIIQCAKFGVSTENTEIYVTHFPCYN------CCRSLLQAGVKKINYYFD 119

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRM 129
             D  ++   +Q L   G+  +++
Sbjct: 120 YRDNPLA---MQLLHDSGVPYEQI 140


>gi|310793981|gb|EFQ29442.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Glomerella graminicola M1.001]
          Length = 398

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 6/60 (10%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
                FM  AL  +R  +  T+  P V C++V +G VI RG+ A      G  HAE  A+
Sbjct: 79  PMHQAFMGQALDMARLAL-RTNETP-VGCVLVYNGSVIARGMNATNVTRNGTRHAEFMAV 136


>gi|255036731|ref|YP_003087352.1| bifunctional deaminase-reductase domain-containing protein
           [Dyadobacter fermentans DSM 18053]
 gi|254949487|gb|ACT94187.1| bifunctional deaminase-reductase domain protein [Dyadobacter
           fermentans DSM 18053]
          Length = 175

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           +     DLK L+  L  +G   + V+GGA V +  I   L+D  I+    I++G+G    
Sbjct: 87  VRFHTGDLKTLIEGLKQKGGKHIFVDGGAEVVNQLIRMDLIDEYIVSLIPILLGDGIR-- 144

Query: 328 PLEEGYLEKNFMCVRRDYF 346
              +G  E+N   V    F
Sbjct: 145 LFHDGRPEQNLAFVSSKSF 163


>gi|330869907|gb|EGH04616.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
          aesculi str. 0893_23]
          Length = 35

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 3  VSSFDARFMSAALRFSRWHVGLTSTNPSVAC 33
           ++ D  +M+ AL  +R  +  T  NP V C
Sbjct: 5  QAALDVHYMARALELARNGLYSTHPNPRVGC 35


>gi|289434763|ref|YP_003464635.1| zinc-binding, ComEB family dCMP deaminase [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289171007|emb|CBH27549.1| zinc-binding, ComEB family dCMP deaminase [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 176

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 50/141 (35%), Gaps = 31/141 (21%)

Query: 30  SVACLIVKDGIVIGRGVTA-YGGCP------------------HAEVQALEEA---GEEA 67
            V   IV+D  +I  G      G                    HAE+ A+ +    G   
Sbjct: 17  MVGATIVRDKRIIAGGYNGSIAGGDHCAEHGCYVVDGHCIRTIHAEMNAILQCAKFGATT 76

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
             A  YVT  PC        C + II+ GI++V    D  +   +   L+     G+ + 
Sbjct: 77  DQAELYVTHFPCL------ACTKSIIQAGIKKVYFAKDYKNHPYA---LELFELAGVDLQ 127

Query: 128 RMMESEGKIFLHAYLTRQVEK 148
           ++   E  + ++ +   ++  
Sbjct: 128 KVEFDESVLQVNNWNEEKMHT 148


>gi|315652209|ref|ZP_07905204.1| deoxycytidylate deaminase [Eubacterium saburreum DSM 3986]
 gi|315485515|gb|EFU75902.1| deoxycytidylate deaminase [Eubacterium saburreum DSM 3986]
          Length = 164

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 51/152 (33%), Gaps = 37/152 (24%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG------------- 50
           ++D  F+  A   ++        N  V   IV  D  ++  G   +              
Sbjct: 10  NWDEYFIGVAKLSAKRSK---DPNTQVGACIVSEDNKILSMGYNGFPRGCSDEEFPWGKD 66

Query: 51  ------------GCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                          H+E+ A+    G    G+  YVTL PC+       CA+ II+ GI
Sbjct: 67  LEISDPYNAKYLYSTHSELNAILNYRGGSLEGSKIYVTLFPCNE------CAKAIIQAGI 120

Query: 98  RRVVVCVDDP-DVRVSGRGLQWLSQKGIIVDR 128
           + ++   D   D        + L+  G+    
Sbjct: 121 KTIIYEDDKYADSPSVRASKRMLNAAGVRYYE 152


>gi|262042008|ref|ZP_06015188.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040626|gb|EEW41717.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 152

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 18/115 (15%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG---VTAYG-GCPHAEVQ 58
           +S+ D R++  AL  ++ ++           ++V++  ++          G    HAE+ 
Sbjct: 1   MSAHD-RYLQRALVLAKQNIADGGR--PFGAVLVRNDEIVAESVNTFHLSGEPTAHAELN 57

Query: 59  ALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           A+ +          R    Y + +PC      P C   +   G+R V     + D
Sbjct: 58  AVRDLAARLGSAVLRECVIYASGQPC------PMCLSALYLTGVREVFFANSNQD 106


>gi|160896585|ref|YP_001562167.1| CMP/dCMP deaminase [Delftia acidovorans SPH-1]
 gi|160362169|gb|ABX33782.1| CMP/dCMP deaminase zinc-binding [Delftia acidovorans SPH-1]
          Length = 171

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 42/116 (36%), Gaps = 21/116 (18%)

Query: 4   SSFDAR---FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRG--VTAYGG--CPHA 55
           +S D R   ++  A+  +         N     LIV  DG V+          G    HA
Sbjct: 12  ASLDERDGLYLRRAIAMADRARQR--GNRPFGALIVAADGRVLAEASNANGESGDCTAHA 69

Query: 56  EVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           E+ A+  A      E    AT Y + EPC        CA  I    I RVV  +D 
Sbjct: 70  ELSAIRLASPLHDREALSAATLYSSAEPC------VMCAGAIFWSAIGRVVYGIDA 119


>gi|323464890|gb|ADX77043.1| conserved hypothetical protein [Staphylococcus pseudintermedius
           ED99]
          Length = 219

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 56/150 (37%), Gaps = 18/150 (12%)

Query: 189 QSDAILVGIGTV-----------LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            SDA+L G  TV            AD  ++   +   ++  P+ +I D    L     + 
Sbjct: 34  HSDAVLFGSNTVFTAFEKYPAETEADFEKI---ITSPEDPRPIGVIPDSRGILRSLHCLR 90

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNI---NIIYCDCRDLKKLLTILVGR-GVTSLLVE 293
               L  ++I+     P   L + ++      +   D  D +K   IL  + G   +  +
Sbjct: 91  NLGYLKEIVILVSTATPKEYLNYLEERHYPYIVSGNDHVDYEKAFQILHEQYGCKYMRTD 150

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            G  + +  + + L+D I L  S   +G  
Sbjct: 151 SGGGLTNKLLENGLIDEISLVISPCFVGNK 180


>gi|296449276|ref|ZP_06891061.1| riboflavin biosynthesis protein RibD domain protein [Clostridium
           difficile NAP08]
 gi|296261875|gb|EFH08685.1| riboflavin biosynthesis protein RibD domain protein [Clostridium
           difficile NAP08]
          Length = 231

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 56/150 (37%), Gaps = 18/150 (12%)

Query: 189 QSDAILVGIGTV-----------LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            SDA+L G  TV            AD  ++   +   ++  P+ +I D    L     + 
Sbjct: 46  HSDAVLFGSNTVFTAFEKYPAETEADFEKI---ITSPEDPRPIGVIPDSRGILRSLHCLR 102

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNI---NIIYCDCRDLKKLLTILVGR-GVTSLLVE 293
               L  ++I+     P   L + ++      +   D  D +K   IL  + G   +  +
Sbjct: 103 NLGYLKEIVILVSTATPKEYLNYLEERHYPYIVSGNDHVDYEKAFQILHEQYGCKYMRTD 162

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            G  + +  + + L+D I L  S   +G  
Sbjct: 163 SGGGLTNKLLENGLIDEISLVISPCFVGNK 192


>gi|294953511|ref|XP_002787800.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239902824|gb|EER19596.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 319

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 16/111 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
            +FM AA+  +   V L    P     I ++ +V+               HAE+ A+  A
Sbjct: 35  EQFMEAAVLSATTGVKLKEGGP-FGACITRNDVVVCCAHNTFFSDRDPTCHAEMNAIRMA 93

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
                 ++  G   Y + EPC      P C   I+  GIR + V +D    
Sbjct: 94  MHLLKTDDLAGCVIYSSFEPC------PMCWGAILASGIRLLYVGLDRHTA 138


>gi|255931347|ref|XP_002557230.1| Pc12g03450 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211581849|emb|CAP79972.1| Pc12g03450 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 177

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 27/152 (17%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTAYG--------GCPHAEV 57
             FM  AL  ++      +    V  ++V   +G V+  G +           G  HAE 
Sbjct: 15  EAFMDLALIQAQKSPPGANK-FCVGAVLVDADNGKVLSTGYSLEYAQNYKGDPGTTHAEQ 73

Query: 58  QA-LEEAGEE-----------ARGATAYVTLEPCSHY-GRSPPCAQFIIECG--IRRVVV 102
              ++ A E                  Y T+EPC+     +  C   I+     I+ V V
Sbjct: 74  CCFIKIADEHNLPEERIHEVLPANTALYTTMEPCNERLSSNMTCTTRILRLKSAIKTVYV 133

Query: 103 CVDDPDVRVSGRGLQ-WLSQKGIIVDRMMESE 133
            + +P   ++    Q  L   G+ V   +E  
Sbjct: 134 GIKEPGTFIAHNDGQGRLEANGVKVVFPVEHW 165


>gi|29830136|ref|NP_824770.1| hypothetical protein SAV_3593 [Streptomyces avermitilis MA-4680]
 gi|29607246|dbj|BAC71305.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 151

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 17/108 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGR-GVTAYGG---CPHAEVQALEEAGEE 66
           M   L  +R     T+ N ++  +++K G VIG+ G     G     H E+ A+ +A E 
Sbjct: 1   MEECLCLAREAA--TTGNYALGAVVIKGGQVIGKSGSKLVQGNDPTGHPEITAIRQAAER 58

Query: 67  -----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
                   A    TLEPC      P C    I   +R +       D 
Sbjct: 59  LGSRYLPDAYLVTTLEPC------PMCTSAAIWAKMRGIAYGATQIDA 100


>gi|304373629|ref|YP_003858374.1| Cd dCMP deaminase [Enterobacteria phage RB16]
 gi|299829585|gb|ADJ55378.1| Cd dCMP deaminase [Enterobacteria phage RB16]
          Length = 174

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 56/168 (33%), Gaps = 44/168 (26%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG------------------------ 45
            M  A++ S+    +++    V  +IV +G V+ +G                        
Sbjct: 5   HMIRAIQHSQGSRCIST---RVGAVIVMNGRVVSQGSNNTVDSDCRCADHNEHMLNDEGK 61

Query: 46  ---VTAYGGCP-------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFI 92
              V              HAE++AL  A   G     A  Y T  PC +  +       I
Sbjct: 62  LKAVHRPEHSAWSNDNEIHAEMKALLSAHTNGIMLNNAELYTTASPCPNCAKHIEWYVAI 121

Query: 93  IECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
              G    V  +D  D R +   +  L + G  V+++   E +  ++ 
Sbjct: 122 ---GAITAVYYLDKYD-RGNDEWISRLQKYGCRVEQIKREELEPHINF 165


>gi|300113646|ref|YP_003760221.1| bifunctional deaminase-reductase domain-containing protein
           [Nitrosococcus watsonii C-113]
 gi|299539583|gb|ADJ27900.1| bifunctional deaminase-reductase domain protein [Nitrosococcus
           watsonii C-113]
          Length = 291

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 48/118 (40%), Gaps = 6/118 (5%)

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT-ENDDPVLALAFRKKNINII 268
           R +      P  +I+     + +   ++K     P+ + T    + + A   + K I II
Sbjct: 125 RQSQGLAPQPAIVIVSDSLNIPIPEALLKANR--PLYVATGSEANQLRAQELKAKGIQII 182

Query: 269 YCDCRDL---KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
                 L   +KL+  L   G T++    G  V  + + +++++ + L  +  ++G  
Sbjct: 183 TAGTGLLVEGQKLIAALGQEGFTTIYSVAGPGVLKTLLAAQMLNRLYLTHALRILGGE 240


>gi|217979352|ref|YP_002363499.1| CMP/dCMP deaminase zinc-binding [Methylocella silvestris BL2]
 gi|217504728|gb|ACK52137.1| CMP/dCMP deaminase zinc-binding [Methylocella silvestris BL2]
          Length = 146

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 20/127 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            V  +IV+DG ++ R             HAE+  +  A      +   G   YVTLEPC+
Sbjct: 22  PVGAVIVRDGAILARAGNRTLADDDPTAHAEMLTIRAAARALGSQRLAGCDLYVTLEPCA 81

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGK 135
                  CA  I    +RR+     DP       G ++           + + +  S+  
Sbjct: 82  M------CAAAISFARVRRLYFAALDPKGGAVEHGPRFFAQPTCHHAPEVYEGLRASQSA 135

Query: 136 IFLHAYL 142
             L  + 
Sbjct: 136 DLLRRFF 142


>gi|161506809|ref|YP_001576763.1| dCMP deaminase [Lactobacillus helveticus DPC 4571]
 gi|260102228|ref|ZP_05752465.1| cytidine/deoxycytidylate deaminase [Lactobacillus helveticus DSM
           20075]
 gi|160347798|gb|ABX26472.1| DCMP deaminase [Lactobacillus helveticus DPC 4571]
 gi|260083969|gb|EEW68089.1| cytidine/deoxycytidylate deaminase [Lactobacillus helveticus DSM
           20075]
          Length = 159

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 54/144 (37%), Gaps = 34/144 (23%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------------- 53
             FM  AL  ++      +    V  ++VKD  +IG G      G P             
Sbjct: 9   QYFMMQALVIAQRSTCNRA---LVGSVLVKDNRIIGTGYNGSVSGQPHCDEVGHQMVDGH 65

Query: 54  -----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                H+E+ A+ +    G        YVT  PC +      C + + + G++++    D
Sbjct: 66  CVRTIHSEMNAIIQCAKFGVSTDDTEIYVTHFPCYN------CCKSLFQAGVKKINYYFD 119

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRM 129
             D  ++   +Q L   G+  +++
Sbjct: 120 YRDNPLA---MQLLHDCGVPYEQI 140


>gi|325677177|ref|ZP_08156843.1| guanine deaminase [Rhodococcus equi ATCC 33707]
 gi|325551874|gb|EGD21570.1| guanine deaminase [Rhodococcus equi ATCC 33707]
          Length = 156

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 38/102 (37%), Gaps = 17/102 (16%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA-- 63
           F+   +  +R +V  T      A +IVKDG V+               HAE+ A+ +A  
Sbjct: 3   FVQRTIDLARQNV--TEGGRPFAAVIVKDGEVLAESPNRVAQTGDPTAHAEILAIRQACT 60

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
               E   G T YV   PC      P C   +  C    VV 
Sbjct: 61  ELGTEHLTGTTIYVLAHPC------PMCLGSLYYCSPDEVVF 96


>gi|314121791|ref|YP_004063910.1| deoxycytidylate deaminase [Enterobacteria phage vB_EcoM-VR7]
 gi|313151548|gb|ADR32604.1| deoxycytidylate deaminase [Enterobacteria phage vB_EcoM-VR7]
          Length = 193

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 11/87 (12%)

Query: 46  VTAYGGCPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
             +     HAE+ A+      G    GAT YVTL PC      P CA+ I + GI+++V 
Sbjct: 96  AWSKNNEIHAELNAILFAARMGSSIEGATMYVTLSPC------PDCAKAISQSGIKKLVY 149

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           C               L   GI V  +
Sbjct: 150 CETYDK--NIPGWDDILKNAGIEVFNV 174


>gi|304405999|ref|ZP_07387657.1| bifunctional deaminase-reductase domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304345242|gb|EFM11078.1| bifunctional deaminase-reductase domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 172

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 30/51 (58%)

Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           R  ++ L+ L  +G  + L+ GGA + +SF+   LVD +I   + ++ G+G
Sbjct: 83  RSPEEALSHLHEQGHQTALISGGADIHNSFLGQGLVDEVIFNVAPVMEGKG 133


>gi|212633820|ref|YP_002310345.1| cytidine/deoxycytidylate deaminase [Shewanella piezotolerans WP3]
 gi|212555304|gb|ACJ27758.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Shewanella
           piezotolerans WP3]
          Length = 146

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 26/116 (22%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------- 53
           ++ +  RF+  A   + W       +  V  +I ++  ++  G   Y             
Sbjct: 2   MTKWATRFLQMAELVASWSK---DPSTQVGAVITENNRIVSLGFNGYPHGVSDSAETDNR 58

Query: 54  --------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                   HAE  A+  A  +  G   +VT  PC      P CA  II+ G+  V 
Sbjct: 59  EMKLLKTLHAEENAILYAKRDLSGCEIWVTHFPC------PNCAAKIIQTGLSTVH 108


>gi|170085575|ref|XP_001874011.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651563|gb|EDR15803.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 286

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 51/150 (34%), Gaps = 42/150 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-- 53
           S+DA FM+ A   +            V  ++V++  V+  G             GGCP  
Sbjct: 127 SWDAYFMTLA-SLASRRSNCMKR--RVGAVLVRENRVLATGYNGTPRGLKNCNEGGCPQC 183

Query: 54  -----------------HAEVQALEEAGEEARG--ATAYVTLEPCSHYGRSPPCAQFIIE 94
                            HAE  AL EAG E  G  A  Y    PC        C   II+
Sbjct: 184 NGRVLPSPSHSYECVCLHAEENALLEAGRERVGTNAVLYCNTCPCLR------CTVKIIQ 237

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            G++ VV  +       S    +   Q G+
Sbjct: 238 TGVKTVVYNLTYKVDDASASLFE---QAGV 264


>gi|21322992|dbj|BAB97621.1| Cytosine/adenosine deaminases [Corynebacterium glutamicum ATCC
           13032]
          Length = 139

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 43/129 (33%), Gaps = 22/129 (17%)

Query: 30  SVACLI-VKDGIVIGRGVTAYGG----CPHAEVQALEEA------GEEARGATAYVTLEP 78
            V  +I    G ++               HAE+ AL  A      G      TA VTLEP
Sbjct: 13  PVGAVIYAPTGEILATATNRREADRDPTAHAEIIALRRAARRFSDGWRLSDCTAVVTLEP 72

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESE 133
           CS       CA  ++   I R+V    +P     G     +    +     +   ++E E
Sbjct: 73  CSM------CAGALVGARIGRIVFGAFEPRTGACGSVFDVVRDPAVLHKVEVSGGILEPE 126

Query: 134 GKIFLHAYL 142
               +  + 
Sbjct: 127 CAALMTEFF 135


>gi|77165596|ref|YP_344121.1| pyrimidine reductase, riboflavin biosynthesis, RibD [Nitrosococcus
           oceani ATCC 19707]
 gi|254434587|ref|ZP_05048095.1| hypothetical protein NOC27_1518 [Nitrosococcus oceani AFC27]
 gi|76883910|gb|ABA58591.1| Pyrimidine reductase, riboflavin biosynthesis, RibD [Nitrosococcus
           oceani ATCC 19707]
 gi|207090920|gb|EDZ68191.1| hypothetical protein NOC27_1518 [Nitrosococcus oceani AFC27]
          Length = 291

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 65/213 (30%), Gaps = 29/213 (13%)

Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG------SVPITGFISKNQVHLLRAQSD 191
                      +  +      S +  I +             I           L AQ+D
Sbjct: 30  NQQLHKLGTSSQPFVYSNFITSLEGRISLEHPQKKTFVVPKAIANPRDWRLFQELAAQAD 89

Query: 192 AILVGIGTVL-------------ADDPELTC----RLNGLQEHSPMRIILDPHFKLSLDS 234
            +L     +              ++ P        R +      P  +I+     + +  
Sbjct: 90  VLLTSGRYIRQLAQNIAQDILPISEQPAYADLIQWRQSQGLAPQPAIVIVSDSLNIPIPE 149

Query: 235 KIIKTALLAPVIIVTENDDP-VLALAFRKKNINIIYCDCRDL---KKLLTILVGRGVTSL 290
            ++      P+ + T ++   + A   + K I +I      L   +KL+  L   G T++
Sbjct: 150 TLLNANR--PLYVATGSEANWLRAQELKAKGIQVIMAGTGLLVEGQKLIAALGQEGFTTI 207

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
               G  V  + + ++ +D + L  +  ++G  
Sbjct: 208 YSVAGPGVLKTLLAAQRLDRLYLTHALRILGGE 240


>gi|28493359|ref|NP_787520.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Tropheryma
           whipplei str. Twist]
 gi|28476400|gb|AAO44489.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Tropheryma
           whipplei str. Twist]
          Length = 231

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 64/179 (35%), Gaps = 24/179 (13%)

Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203
            +  K   I      S    +    C S  ++    +  +H +R  +DA+ VG  T   +
Sbjct: 13  YKFPKDDWICANYIQSFSGNLNSDNCTSDSLSNPRDRMILHTIREANDAVFVGARTARVE 72

Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
           +           ++ P+ I+L           +   +     I++               
Sbjct: 73  N--------ISVKNKPL-IVLTNSG------NLGGISANRNTIVIAPKTTETQIRHTIGA 117

Query: 264 NINIIYCDCR-DL---KKLLTILVGR-----GVTSLLVEGGAAVAHSFINSRLVDSIIL 313
           ++N+I+ D   D+    + + +L+ +     G   ++ EGG  +    +++  +D + +
Sbjct: 118 SVNVIWLDNFGDITRYSQTMGVLIAKAVKSLGFKRIVCEGGLTLIRMLLSAGAIDELCI 176


>gi|227877964|ref|ZP_03995968.1| competence protein ComEB family protein [Lactobacillus crispatus
           JV-V01]
 gi|256844344|ref|ZP_05549830.1| dCMP deaminase [Lactobacillus crispatus 125-2-CHN]
 gi|256849252|ref|ZP_05554685.1| dCMP deaminase [Lactobacillus crispatus MV-1A-US]
 gi|293381479|ref|ZP_06627474.1| putative ComE operon protein 2 [Lactobacillus crispatus 214-1]
 gi|312978355|ref|ZP_07790097.1| cytidine/deoxycytidylate deaminase family protein [Lactobacillus
           crispatus CTV-05]
 gi|227862434|gb|EEJ69949.1| competence protein ComEB family protein [Lactobacillus crispatus
           JV-V01]
 gi|256613422|gb|EEU18625.1| dCMP deaminase [Lactobacillus crispatus 125-2-CHN]
 gi|256714028|gb|EEU29016.1| dCMP deaminase [Lactobacillus crispatus MV-1A-US]
 gi|290921949|gb|EFD98956.1| putative ComE operon protein 2 [Lactobacillus crispatus 214-1]
 gi|310894698|gb|EFQ43770.1| cytidine/deoxycytidylate deaminase family protein [Lactobacillus
           crispatus CTV-05]
          Length = 159

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 55/144 (38%), Gaps = 34/144 (23%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------------- 53
             FM  AL  ++      +    V  ++VK+  +IG G      G P             
Sbjct: 9   QYFMMQALVIAQRSTCNRA---LVGSVLVKNNRIIGTGYNGSVSGQPHCDDVGHQMVDGH 65

Query: 54  -----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                H+E+ A+ +    G        YVT  PC +      C + +++ G++++    D
Sbjct: 66  CVRTIHSEMNAIIQCAKFGVSTENTEIYVTHFPCYN------CCKSLLQAGVKKINYYFD 119

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRM 129
             D  ++   +Q L   G+  +++
Sbjct: 120 YRDNPLA---MQLLHDSGVPYEQI 140


>gi|264678844|ref|YP_003278751.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
           CNB-2]
 gi|262209357|gb|ACY33455.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
           CNB-2]
          Length = 146

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 17/108 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE---- 62
           M  A+  +  +            ++ +   V+  GV      +    HAE+QA+      
Sbjct: 1   MRMAVDLAHANRLKGGR--PFGAVLAQGNEVVATGVNEIIASHDPSTHAEMQAIRAGTQK 58

Query: 63  -AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
            A     G + Y +  PC      P C   ++  G  +V    D+ D 
Sbjct: 59  RANPSLAGLSIYASGHPC------PMCLAALVMNGAEQVFFAFDNQDA 100


>gi|215422331|ref|NP_001135855.1| adenosine deaminase, tRNA-specific 2, TAD2 homolog [Nasonia
           vitripennis]
          Length = 169

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 48/173 (27%), Gaps = 26/173 (15%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA- 63
            +M  AL  +     L      V CL + +  +I  G            HAE+  +++  
Sbjct: 5   EWMDKALEKAEES--LKKGEVPVGCLFLYENKIIATGSNTVNETRNATRHAELNCIDDVL 62

Query: 64  ----------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                      E  +     VT+EPC        CA  + +  IR ++    +       
Sbjct: 63  VFCQKNNYNYKEVFKNIDVVVTVEPCIM------CAAALHQLQIRSIIYGCANDRFGGCK 116

Query: 114 RGLQ---WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163
              +       K  +V  +   E    L  +                   DN 
Sbjct: 117 SVYEVSKVYESKINVVGNVKGEEAMQLLKDFYKGTNPNAPEAKKGRKKKVDNK 169


>gi|251795501|ref|YP_003010232.1| dihydrofolate reductase-like protein [Paenibacillus sp. JDR-2]
 gi|247543127|gb|ACT00146.1| Dihydrofolate reductase-like protein [Paenibacillus sp. JDR-2]
          Length = 169

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 39/79 (49%)

Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
           R  ++ L  L  +G  + L+ GGA + +SF+N  LVD +I   + ++ G+G      ++ 
Sbjct: 83  RSPEEALNHLRQKGHQTALISGGAEIHNSFLNQNLVDEVIFNVAPVMEGKGLNLLIDKDN 142

Query: 333 YLEKNFMCVRRDYFGSDVC 351
           YL K+   +     G  + 
Sbjct: 143 YLYKHVELLNCQPLGGGIV 161


>gi|163797849|ref|ZP_02191794.1| Cytosine/adenosine deaminase [alpha proteobacterium BAL199]
 gi|159176893|gb|EDP61460.1| Cytosine/adenosine deaminase [alpha proteobacterium BAL199]
          Length = 150

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 44/123 (35%), Gaps = 19/123 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGV----TAYGGCPHAEV-----Q 58
           +M+ AL  +      ++    V  ++V    G V+        T      HAEV      
Sbjct: 6   YMARALAQAESAA--SAGEVPVGAVVVHAPSGRVLAEAGNRVETDCDPTAHAEVLAIRAA 63

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           A             YVTLEPC+       CAQ I    +RR+V    DP       G + 
Sbjct: 64  ARALGAPRLVDCDLYVTLEPCAM------CAQAIAHARLRRLVFGAYDPKGGGVEHGARV 117

Query: 119 LSQ 121
           L Q
Sbjct: 118 LEQ 120


>gi|51246123|ref|YP_066007.1| deoxycytidylate deaminase [Desulfotalea psychrophila LSv54]
 gi|50877160|emb|CAG37000.1| probable deoxycytidylate deaminase [Desulfotalea psychrophila
           LSv54]
          Length = 165

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 52/150 (34%), Gaps = 34/150 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
           S+D  FM+ A+  ++        +  V   I  K   ++G G                  
Sbjct: 8   SWDEYFMAVAILSAQRSK---DPSTQVGACIANKANKIVGVGYNGFPLGCDDDDLPWGRE 64

Query: 47  -----TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                T Y    HAE+ A L  +  +      YV L PC+       C + II+ GI+ V
Sbjct: 65  GDFLETKYPYVCHAELNAVLNSSSRDLMDCKIYVALFPCNE------CTKVIIQSGIKEV 118

Query: 101 VVCVD-DPDVRVSGRGLQWLSQKGIIVDRM 129
           +   D   D        +  +  G+   ++
Sbjct: 119 IYLSDKYKDTDQVRASKKMFNMSGVKCRQL 148


>gi|227509717|ref|ZP_03939766.1| guanine deaminase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190641|gb|EEI70708.1| guanine deaminase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 160

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 40/118 (33%), Gaps = 17/118 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
           M   + D +FMS A + +  ++      P    +I     ++               HAE
Sbjct: 1   MENINID-QFMSLAAKEAENNLRTGDGGP-FGAVIANGQDILVTAHNQVLKDQDPTAHAE 58

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           + A+ +A +     +  G T Y +  PC      P C   II   I+         D 
Sbjct: 59  ITAIRKATKKLGSYDLSGYTLYTSCYPC------PMCLGAIIWSNIKVAYYGNTAKDA 110


>gi|298530999|ref|ZP_07018400.1| CMP/dCMP deaminase zinc-binding [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298509022|gb|EFI32927.1| CMP/dCMP deaminase zinc-binding [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 171

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 38/120 (31%), Gaps = 19/120 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDG--IVIGRGVTA----YGGCPHAEVQALEEAG 64
           M  AL+ +      +     V  ++   G   ++  G            HAE+ AL  AG
Sbjct: 26  MQEALKEA--GKARSRGEVPVGAVLADAGTGEILAGGSNRCIELNDPTAHAEIIALRRAG 83

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           +        G    VTLEPC        C   I +  I  +V    DP           L
Sbjct: 84  QARGNYRLPGTVLAVTLEPCLM------CLGAIAQARIDGLVYGPRDPGAGALFSRPDIL 137


>gi|116794256|gb|ABK27067.1| unknown [Picea sitchensis]
 gi|116794306|gb|ABK27088.1| unknown [Picea sitchensis]
          Length = 186

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 16/116 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
           V   D +F+S A+  +   V      P    ++V++  VI               HAEV 
Sbjct: 27  VQDRDLKFLSKAVEEAYSGVNCGHGGP-FGAIVVRNDEVIASCHNMVLKNMDPTAHAEVT 85

Query: 59  ALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           A+ EA  +           + + EPC      P C   I    I+R++        
Sbjct: 86  AIREACNKLGRIELSDCEIFASCEPC------PMCFGAIHLSRIKRLLYGAKAEAA 135


>gi|296134383|ref|YP_003641630.1| CMP/dCMP deaminase zinc-binding protein [Thermincola sp. JR]
 gi|296032961|gb|ADG83729.1| CMP/dCMP deaminase zinc-binding protein [Thermincola potens JR]
          Length = 147

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 45/129 (34%), Gaps = 40/129 (31%)

Query: 31  VACLIVKDGIVIGRGV---------------------------TAYGGCPHAEVQALEEA 63
           V  +IV+D  ++  G                                   HAE   + +A
Sbjct: 27  VGAVIVRDNRILASGYNGPPRGLRHCDETGCLRDKLNIPSGERHELCRGLHAEQNVIIQA 86

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G   +G T Y+T +PC        CA+ I+  GI++VV     PD       L+   
Sbjct: 87  AMHGINIQGGTFYITHQPCI------LCAKMIVNAGIKKVVYRGKYPDALA----LEIFE 136

Query: 121 QKGIIVDRM 129
           + G+ +  +
Sbjct: 137 EAGVELVCL 145


>gi|126311160|ref|XP_001380965.1| PREDICTED: similar to DEADC1 protein [Monodelphis domestica]
          Length = 182

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 49/153 (32%), Gaps = 25/153 (16%)

Query: 18  SRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEA------ 67
           ++    L +    V CL+V +  V+ +G            HAE+ A+++  E        
Sbjct: 22  AQAKEALENGEVPVGCLMVYNNKVLAKGRNEVNQTKNATRHAEMVAIDQVLEWCHRYGKS 81

Query: 68  -----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW---- 118
                     YVT+EPC        CA  +    I  VV    +      G  L      
Sbjct: 82  PTEVFEHTVLYVTVEPCIM------CAAALRLMKIPLVVYGCQNERFGGCGSVLDIASAD 135

Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSH 151
           L   G     +   + +  +    T   ++  +
Sbjct: 136 LPNTGTPFQCIPGYQAEEAVEMLKTFYKQENPN 168


>gi|302858549|gb|ADL71295.1| gp35 [Mycobacterium phage Eagle]
          Length = 158

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 45/127 (35%), Gaps = 39/127 (30%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP---------- 53
           ++D  F+  A   +       S    V  ++VKD  V G G   A  G P          
Sbjct: 4   TWDEYFLGIARAVAERSDCERSK---VGAVVVKDRRVRGTGYNGAPAGRPGCGSCPRRRS 60

Query: 54  ------------------HAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                             HAE  AL     E+  GAT Y+T EPC+       C + I  
Sbjct: 61  SVDPGSGYDSGPGRCVAVHAEANALLHCDREDLVGATLYITREPCNG------CLKLIEA 114

Query: 95  CGIRRVV 101
            G+ RVV
Sbjct: 115 AGVARVV 121


>gi|297588118|ref|ZP_06946762.1| competence protein ComEB [Finegoldia magna ATCC 53516]
 gi|297574807|gb|EFH93527.1| competence protein ComEB [Finegoldia magna ATCC 53516]
          Length = 139

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 35/148 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV---------------TA 48
           S++  FM  AL  +      T     V C++V  D  ++  G                T 
Sbjct: 4   SWNEYFMDLALNVATRS---TCDRAFVGCVLVNSDNRIVSTGYNGAISGNPHCDEVGHTL 60

Query: 49  YGG----CPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
             G      HAE+ AL    + G   +G   YVT  PC +      C + +I+ GI ++ 
Sbjct: 61  RDGHCIATIHAEMNALLYCAKEGIAVKGCICYVTHFPCLN------CTKSLIQAGISKIY 114

Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
                   RV    ++ L++  I   ++
Sbjct: 115 Y---HEAYRVDEYAIELLNRNNIEYVQI 139


>gi|160897646|ref|YP_001563228.1| CMP/dCMP deaminase [Delftia acidovorans SPH-1]
 gi|160363230|gb|ABX34843.1| CMP/dCMP deaminase zinc-binding [Delftia acidovorans SPH-1]
          Length = 153

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 17/111 (15%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE--- 61
           R +  A++ +  +            L+ ++G ++  GV      +    HAE+QAL    
Sbjct: 8   RLLRHAVQLAHDNRLRGGR--PFGALLAREGQILSTGVNEIVQSHDPSAHAEMQALRAGT 65

Query: 62  --EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
             +A     G T Y +  PC      P C   ++  G  +V    D+ D +
Sbjct: 66  RAQANPSLAGCTIYASGHPC------PMCLAALVMAGAEQVFFAFDNADAQ 110


>gi|328883492|emb|CCA56731.1| Dihydrofolate reductase [Streptomyces venezuelae ATCC 10712]
          Length = 180

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           RDL  L+  L  RGV  +  +GG  +  SFI +  VD  I+  + ++IG G
Sbjct: 93  RDLDGLVADLDERGVKHVYPDGG-RLIQSFIRAGRVDRFIISVAPVLIGAG 142


>gi|326335838|ref|ZP_08202017.1| zinc-binding domain protein [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325691982|gb|EGD33942.1| zinc-binding domain protein [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 145

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 55/146 (37%), Gaps = 18/146 (12%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--TAYGG--CPHAEVQALEE 62
           D  FM  AL+ +   +        V  +I  + I+I +    T   G    HAE+QA+  
Sbjct: 4   DTYFMQKALQEAE--IAFEQGEVPVGAIITINEIIIAKTHNLTERLGDVTAHAEIQAITS 61

Query: 63  AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A E   G      T YVTLEPC        CA  +    I ++V    D   R       
Sbjct: 62  ASEYMGGKYLTNCTLYVTLEPC------VMCAGALYWSQIGKIVYASTDER-RGYHLYGN 114

Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLT 143
            L  K  ++  ++E E    L  +  
Sbjct: 115 LLHPKTEVIHGILEKESSQLLKKFFQ 140


>gi|56965577|ref|YP_177311.1| guanine deaminase [Bacillus clausii KSM-K16]
 gi|56911823|dbj|BAD66350.1| guanine deaminase [Bacillus clausii KSM-K16]
          Length = 156

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 16/90 (17%)

Query: 30  SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
             A +IV  +G +IG+G  +         HAEV A+ +A       +  G T Y + EPC
Sbjct: 24  PFAAIIVDPNGAIIGQGTNSVTNDNDPTAHAEVVAIRDACNTINDFQLEGCTLYTSCEPC 83

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
                 P C   I     + V       D 
Sbjct: 84  ------PMCLGAIYWARPKAVYFAATQEDA 107


>gi|222153659|ref|YP_002562836.1| cytidine and deoxycytidylate deaminase [Streptococcus uberis 0140J]
 gi|222114472|emb|CAR43320.1| putative cytidine and deoxycytidylate deaminase [Streptococcus
           uberis 0140J]
          Length = 151

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 36/144 (25%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY---------GG-------- 51
            FM+ A   S+     T     V  ++VKD  +I  G              G        
Sbjct: 10  YFMANAELISKRS---TCDRAYVGAVLVKDNRIIATGYNGGVSATDNCDEAGHYMEDGHC 66

Query: 52  --CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV-CVD 105
               HAE+ AL +    G    G   YVT  PC +      C + +++ GI+++      
Sbjct: 67  IRTVHAEMNALIQCAKEGISTDGTEIYVTHFPCIN------CTKALLQAGIKKITYKAHY 120

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRM 129
            P        ++ + +KG+   + 
Sbjct: 121 RPHPFA----IELMEKKGVAYVQH 140


>gi|182678875|ref|YP_001833021.1| CMP/dCMP deaminase zinc-binding [Beijerinckia indica subsp.
          indica ATCC 9039]
 gi|182634758|gb|ACB95532.1| CMP/dCMP deaminase zinc-binding [Beijerinckia indica subsp.
          indica ATCC 9039]
          Length = 151

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 12/88 (13%)

Query: 1  MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
          M  +     F S A   +            V  +I+++GI++ R             HAE
Sbjct: 1  MKPTPRPDPF-SLAFEEAHKAAAR--GEVPVGAVIMREGIILARAGNQVLADKDPTAHAE 57

Query: 57 VQALEEA-----GEEARGATAYVTLEPC 79
          + A+ +A      E   G   YVTLEPC
Sbjct: 58 MLAIRQACAVLGSERLIGCDLYVTLEPC 85


>gi|212691512|ref|ZP_03299640.1| hypothetical protein BACDOR_01007 [Bacteroides dorei DSM 17855]
 gi|212665890|gb|EEB26462.1| hypothetical protein BACDOR_01007 [Bacteroides dorei DSM 17855]
          Length = 217

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 7/114 (6%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVI-IVTENDDPVLALAFRKKNINIIY--CDCRDLKKL 278
           II+D + KL         A   P++ IV+E          R   I+ I    +  DL + 
Sbjct: 76  IIVDTYGKLRWQE---GEADGHPLLCIVSEQVSEKYLETLRTSGISWIATGAERIDLPQA 132

Query: 279 LTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           + +L    GV  L + GG  +   F+ + L+D + +  +  + G  G  +  + 
Sbjct: 133 MELLCEHFGVECLAIVGGGHICGGFLEAGLIDEVSIMVAPGIDGRKGQTAVFDG 186


>gi|326326019|ref|YP_004250828.1| putative deoxycytidylate deaminase [Vibrio nigripulchritudo]
 gi|323669070|emb|CBJ93112.1| Putative deoxycytidylate deaminase [Vibrio nigripulchritudo]
          Length = 148

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 52/145 (35%), Gaps = 31/145 (21%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA-YGGCP------- 53
           +S +D RF   A   S W       N  V  ++  K G  I  G      G         
Sbjct: 1   MSKWDIRFCKLAKHVSEWSK---DPNAKVGAVLFSKKGGDITIGYNGFPFGVEDSVKRLQ 57

Query: 54  ----------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                     HAEV AL  AG  ARGAT +V  +P         CA  II+ G++RVV  
Sbjct: 58  DKETKLDLVVHAEVNALIAAGSRARGATLFVWGKPICSR-----CAGPIIQAGVKRVVAL 112

Query: 104 ----VDDPDVRVSGRGLQWLSQKGI 124
                D    R     L+   +  I
Sbjct: 113 KPGDSDSKWDRSGQVALEMFQEASI 137


>gi|195378584|ref|XP_002048063.1| GJ13755 [Drosophila virilis]
 gi|194155221|gb|EDW70405.1| GJ13755 [Drosophila virilis]
          Length = 193

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 57/161 (35%), Gaps = 35/161 (21%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGC------------ 52
           +D  FM+ AL  SR        +  V   IV K   ++  G   +               
Sbjct: 33  WDDYFMATALLSSRRSK---DPSTQVGACIVDKHKRIVAIGYNGFPRDCSDDVFSWSKDN 89

Query: 53  -----------PHAEVQALEEAGEEARGAT-AYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                       HAE  A+  +   +   T  Y TL PC+       C + II+ GIR +
Sbjct: 90  SDPLENKNMYVVHAEANAILNSNSRSLDGTRLYTTLFPCNE------CTKLIIQSGIREI 143

Query: 101 VVCVDDP-DVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
               D   +  +     + L   GI+  R + ++ +I ++ 
Sbjct: 144 YYISDKYAEKPIYRASKRMLDAVGIVYQRHVPTQKQIIINF 184


>gi|91088935|ref|XP_973512.1| PREDICTED: similar to Deoxycytidylate deaminase (dCMP deaminase)
           [Tribolium castaneum]
 gi|270011567|gb|EFA08015.1| hypothetical protein TcasGA2_TC005604 [Tribolium castaneum]
          Length = 178

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 49/145 (33%), Gaps = 36/145 (24%)

Query: 8   ARFMSAALRFSRWHV-GLTSTNPSVA-CLIVKDGIVIGRGVTAYG-GCP----------- 53
             FMS  L  ++      T     V  C++ + G +IG G      GC            
Sbjct: 18  EHFMSFCLLAAQRSKDPCTQ----VGACVVDRQGNLIGSGYNGMPRGCHDDEFPWGKRSE 73

Query: 54  -----------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                      HAE+ A+            YVTL PC+       CA+ II+ GI  VV 
Sbjct: 74  DPLENKHLYVCHAELNAIANTTGTMNDCVIYVTLFPCNE------CAKLIIQNGISEVVY 127

Query: 103 CVDDPDVRVSGRGLQWLSQ-KGIIV 126
             D    + S    + +    G+  
Sbjct: 128 LSDKHAHKKSTVAAKAMFDSAGVKY 152


>gi|293406146|ref|ZP_06650072.1| bifunctional deaminase-reductase [Escherichia coli FVEC1412]
 gi|298381881|ref|ZP_06991478.1| deaminase-reductase [Escherichia coli FVEC1302]
 gi|300900166|ref|ZP_07118355.1| riboflavin biosynthesis protein RibD protein [Escherichia coli MS
           198-1]
 gi|291426152|gb|EFE99184.1| bifunctional deaminase-reductase [Escherichia coli FVEC1412]
 gi|298277021|gb|EFI18537.1| deaminase-reductase [Escherichia coli FVEC1302]
 gi|300356281|gb|EFJ72151.1| riboflavin biosynthesis protein RibD protein [Escherichia coli MS
           198-1]
          Length = 178

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 59/175 (33%), Gaps = 37/175 (21%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA---QSDAILVGIGTVLADDPELT 208
             + IAVS D  I         +       + H   A     D I++G GT       LT
Sbjct: 4   THVFIAVSLDGYIARQDGDIDWLLKRDDPTEDHGYAAFIADKDWIIMGRGTYEK---VLT 60

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
              +      P+ ++L      +   K +K                             +
Sbjct: 61  --FDEWPYDRPV-LVLSRQLTDTPVPKALKGK---------------------------V 90

Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
              CR  ++ L  L+ + V  + ++GG  +  SF+   LV  I++    +++G G
Sbjct: 91  QFSCRTPREALADLMEKNVHRVYIDGG-QLIQSFLREGLVADIVITTVPVLLGSG 144


>gi|153817018|ref|ZP_01969685.1| deoxycytidylate deaminase, putative [Vibrio cholerae NCTC 8457]
 gi|126512428|gb|EAZ75022.1| deoxycytidylate deaminase, putative [Vibrio cholerae NCTC 8457]
          Length = 166

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 47/155 (30%), Gaps = 35/155 (22%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPS--VACLIVKDGIVIGRGVTAYGG-------------- 51
            RF   A       VG  S +PS  V  +I K   ++  G   Y                
Sbjct: 12  QRFFQMA-EL----VGSWSKDPSTQVGAVITKQNRIVSVGFNGYPHGISDSASTDDRDMK 66

Query: 52  ---CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                HAE  A+  A  +  G   YVT  PC      P CA  II+ GI  V       D
Sbjct: 67  YLKTLHAEENAILFAKRDLDGCEIYVTHFPC------PNCAAKIIQTGISAVHCPEQSED 120

Query: 109 VRVS-----GRGLQWLSQKGIIVDRMMESEGKIFL 138
                            Q G+ V  +   E K   
Sbjct: 121 FLSRWGDKIKVSQDMFLQAGVKVYWLPLVELKHIN 155


>gi|78778494|ref|YP_396606.1| ribD/ribG-like [Prochlorococcus marinus str. MIT 9312]
 gi|78711993|gb|ABB49170.1| ribD/ribG-like protein [Prochlorococcus marinus str. MIT 9312]
          Length = 216

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 61/168 (36%), Gaps = 12/168 (7%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
                + + IA S D  I     G   +     K  ++   +  DA + G+GT+LA    
Sbjct: 1   MSIPRVIIVIASSLDGRIAFPEGGESHLGSEEDKKMLNQNLSMVDATIFGLGTLLAHQST 60

Query: 207 L------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
                        + +  P+ I+     K + + K  +  +    +I +   D +    F
Sbjct: 61  YLIKNLNDNNEVKISKSQPISIVASNSKKFNSNWKYFRQPIR-RWLISSSKVDNLSKNDF 119

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
            K+             K L  L  +G+  L + GGA + +SFI   L+
Sbjct: 120 EKQ-----LFFEHSWGKTLISLKKQGINDLALLGGAKLINSFIKEDLI 162


>gi|218706143|ref|YP_002413662.1| putative Bifunctional deaminase-reductase [Escherichia coli UMN026]
 gi|218433240|emb|CAR14139.1| putative Bifunctional deaminase-reductase, C-terminal from
           bacteriophage origin [Escherichia coli UMN026]
          Length = 179

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 59/175 (33%), Gaps = 37/175 (21%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA---QSDAILVGIGTVLADDPELT 208
             + IAVS D  I         +       + H   A     D I++G GT       LT
Sbjct: 5   THVFIAVSLDGYIARQDGDIDWLLKRDDPTEDHGYAAFIADKDWIIMGRGTYEK---VLT 61

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
              +      P+ ++L      +   K +K                             +
Sbjct: 62  --FDEWPYDRPV-LVLSRQLTDTPVPKALKGK---------------------------V 91

Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
              CR  ++ L  L+ + V  + ++GG  +  SF+   LV  I++    +++G G
Sbjct: 92  QFSCRTPREALADLMEKNVHRVYIDGG-QLIQSFLREGLVADIVITTVPVLLGSG 145


>gi|312863405|ref|ZP_07723643.1| putative ComE operon protein 2 [Streptococcus vestibularis F0396]
 gi|322516047|ref|ZP_08068984.1| competence protein comEB [Streptococcus vestibularis ATCC 49124]
 gi|311100941|gb|EFQ59146.1| putative ComE operon protein 2 [Streptococcus vestibularis F0396]
 gi|322125462|gb|EFX96808.1| competence protein comEB [Streptococcus vestibularis ATCC 49124]
          Length = 151

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 55/159 (34%), Gaps = 37/159 (23%)

Query: 1   MP--VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----- 53
           MP  +S  D  FM+ A   S+     T     V  ++VKD  +I  G             
Sbjct: 1   MPNRLSWQD-YFMANAELISKRS---TCDRAFVGAVLVKDNRIIATGYNGGVSETDNCNE 56

Query: 54  --------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                         HAE+ AL +    G   +    YVT  PC +      C + +++ G
Sbjct: 57  VGHYMEDGHCIRTVHAEMNALIQCAKEGISTKNTEIYVTHFPCIN------CTKALLQAG 110

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135
              VV      + R     ++ + QKG+   +    E  
Sbjct: 111 ---VVKITYKANYRPHAFAIELMEQKGVSYVQHDVPEVH 146


>gi|153832876|ref|ZP_01985543.1| deoxycytidylate deaminase [Vibrio harveyi HY01]
 gi|148870799|gb|EDL69698.1| deoxycytidylate deaminase [Vibrio harveyi HY01]
          Length = 152

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 52/156 (33%), Gaps = 31/156 (19%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------- 53
           +S ++ RF   A   + W       +  V  +I K+  ++  G   Y             
Sbjct: 2   ISKWEKRFYQMAELVASWSK---DPSTQVGAVITKNNRIVSVGFNGYPHGVSDSVDTDER 58

Query: 54  --------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                   HAE  A+  +  +  G   +VT  PC      P CA  II+ GI RV     
Sbjct: 59  ELKYLKTLHAEENAILFSKRDLDGCDIWVTHFPC------PNCAAKIIQTGIARVSCPEQ 112

Query: 106 DPDVRVS-----GRGLQWLSQKGIIVDRMMESEGKI 136
             D                 Q G+ V+ +  +E + 
Sbjct: 113 SEDFLSRWGDKIQVSQDMFDQAGVEVNWLPINEIEE 148


>gi|238881956|gb|EEQ45594.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 270

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 17/103 (16%)

Query: 30  SVACLIV--KDGIVIGRGV----TAYGGCPHAEVQALEEAGE-----EARGATAYVTLEP 78
            V+C++V  K   +I  G      +  G  HAE  AL+  GE     +      YVT+EP
Sbjct: 18  PVSCIVVDSKSDKIISIGYNYTNHSLNGTQHAEFIALQRFGEQKSSIDYNDLILYVTVEP 77

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           C        CA ++ + GI++V+    +     +G  L   S 
Sbjct: 78  CIM------CASYLRQLGIKKVIFGCGNDRFGGNGTILPIHSD 114


>gi|237726205|ref|ZP_04556686.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229434731|gb|EEO44808.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 225

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 7/114 (6%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVI-IVTENDDPVLALAFRKKNINIIY--CDCRDLKKL 278
           II+D + KL         A   P++ IV+E          R   I+ I    +  DL + 
Sbjct: 84  IIVDTYGKLRWQE---GEADGHPLLCIVSEQVSEKYLETLRTSGISWIATGAERIDLPQA 140

Query: 279 LTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           + +L    GV  L + GG  +   F+ + L+D + +  +  + G  G  +  + 
Sbjct: 141 MELLCEHFGVECLAIVGGGHICGGFLEAGLIDEVSIMVAPGIDGRKGQTAVFDG 194


>gi|153006591|ref|YP_001380916.1| deaminase-reductase domain-containing protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030164|gb|ABS27932.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
           sp. Fw109-5]
          Length = 182

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 60/193 (31%), Gaps = 41/193 (21%)

Query: 159 SQDNMIGMAGCGSVPITGFISKNQV--HLLR--AQSDAILVGIGTVLADDPELTCRLNGL 214
           S D  I  A      +  F     V  H  R  ++  A+++G  T               
Sbjct: 11  SLDGYIADADGRLDWLFQFDDAEGVKAHHERFMSEVGALVMGARTYD------------- 57

Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274
                   IL+                  P  + T  + P    A    ++     D R 
Sbjct: 58  -------FILEQGGAWPY--------AGLPAWVFTHRERP----APPGADVRFTSEDVRA 98

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
           +   +     RG  ++ + GG  +A  F+   L+D + L  + + +G G   +PL    +
Sbjct: 99  VHASMVK-AARG-RNVWMIGGGELAAQFLAHGLLDELHLGVAPVFLGAG---APLLPASV 153

Query: 335 EKNFMCVRRDYFG 347
               +      FG
Sbjct: 154 RTPLVLAGVKQFG 166


>gi|283481246|emb|CAZ69362.1| putative deoxycytidylate deaminase [Emiliania huxleyi virus 99B1]
          Length = 173

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 52/148 (35%), Gaps = 37/148 (25%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGV---------------- 46
           S+D  FM  A + S   +     +  V   I++     +I  G                 
Sbjct: 19  SWDQYFMGVA-KLS--AMRSKDPSTQVGSCIIESTTNKIISIGYNGMPRGCNDDDFPWGK 75

Query: 47  ---------TAYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                    T Y    H+E  A+  A G    G T YVTL PC+       C + II+ G
Sbjct: 76  KEKNSNIINTKYPFVVHSEANAILNANGTSVNGCTMYVTLFPCNE------CTKLIIQSG 129

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           I  +V   D  D+      L+ L   G+
Sbjct: 130 ICEIVYLDDYNDITTKTASLRMLQSAGV 157


>gi|269958624|ref|YP_003328411.1| putative cytosine/adenosine deaminase [Anaplasma centrale str.
           Israel]
 gi|269848453|gb|ACZ49097.1| putative cytosine/adenosine deaminase [Anaplasma centrale str.
           Israel]
          Length = 154

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 50/155 (32%), Gaps = 23/155 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-----YGGCPHAEVQALEEA- 63
           +M  A+  +            V  ++V +  V+                HAE+ A+ EA 
Sbjct: 9   YMRLAMLEAVSSPAEV----PVGAIVVDERGVVISSRHNLTLRNSDPTAHAEMLAIREAC 64

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD---VRVSGRGL 116
                        YVTLEPC+       CA  I    IRR+     +     V    R  
Sbjct: 65  LHFSTHVLNNCDMYVTLEPCAM------CAYAISLSRIRRLYFGAYNVKCGGVEHGARVF 118

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSH 151
           ++ +    +    +E E    L  +  +  + R  
Sbjct: 119 RFCNHIPEVYGGFLERENAEILKNFFQKLRKHRCQ 153


>gi|116333998|ref|YP_795525.1| deoxycytidylate deaminase [Lactobacillus brevis ATCC 367]
 gi|116099345|gb|ABJ64494.1| Deoxycytidylate deaminase [Lactobacillus brevis ATCC 367]
          Length = 159

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 46/136 (33%), Gaps = 31/136 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            +D  FM  AL  S           SV   IV+D  +I  G                   
Sbjct: 7   PWDQYFMLQALVMSTRSTCNRL---SVGATIVRDKRIIAAGYNGSVSGDDHCLDEGCYLV 63

Query: 54  --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE+ A+ +    GE   GA  YVT  PC        C + +++ GI ++  
Sbjct: 64  DGHCVRTIHAEMNAVLQCAKFGEATDGAEIYVTDFPCLQ------CTKMLLQAGITKITY 117

Query: 103 CVDDPDVRVSGRGLQW 118
             +  +   + + +  
Sbjct: 118 MRNYHNDPYAQKLIAL 133


>gi|283457044|ref|YP_003361608.1| tRNA-specific adenosine deaminase [Bifidobacterium dentium Bd1]
 gi|283103678|gb|ADB10784.1| MesJ tRNA-specific adenosine deaminase [Bifidobacterium dentium
           Bd1]
          Length = 145

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 47/128 (36%), Gaps = 21/128 (16%)

Query: 30  SVACLIVKD-GIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPC 79
            V  +++   G VIGRG            HAEV+A+ EA            T  VTLEPC
Sbjct: 18  PVGAVVLDAAGQVIGRGRNLREADRDPLAHAEVKAMTEAAHALGTWNLADCTLIVTLEPC 77

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEG 134
                 P CA   ++  I R+V    D  +   G          I     ++  M ESE 
Sbjct: 78  ------PMCAGACLQTHIGRIVFGAWDAKLGACGSVWDIPRDPHIGSVPEVIGGMHESEC 131

Query: 135 KIFLHAYL 142
              L  + 
Sbjct: 132 ARILTDFF 139


>gi|19551950|ref|NP_599952.1| hypothetical protein NCgl0691 [Corynebacterium glutamicum ATCC
           13032]
          Length = 188

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 11/115 (9%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           P  + +  +          K + ++  D  D L  +L        T + + GG  +A  F
Sbjct: 79  PTWVFSSRN----LETPEGKPVKVVNGDVADVLPAILEESPEN--TDIWIVGGGDLAGQF 132

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS--DVCLEYI 355
            ++  +D IIL  + + + + G P+ +           V     G   ++ LE I
Sbjct: 133 FDAGALDRIILTMAPVFL-DEGQPA-MPRRIESNRLRTVNVREVGQFTEITLETI 185


>gi|62389610|ref|YP_225012.1| hypothetical protein cg0828 [Corynebacterium glutamicum ATCC 13032]
 gi|21323487|dbj|BAB98114.1| Dihydrofolate reductase [Corynebacterium glutamicum ATCC 13032]
 gi|41324945|emb|CAF19426.1| putative dihydrofolate reductase [Corynebacterium glutamicum ATCC
           13032]
          Length = 189

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 11/115 (9%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           P  + +  +          K + ++  D  D L  +L        T + + GG  +A  F
Sbjct: 80  PTWVFSSRN----LETPEGKPVKVVNGDVADVLPAILEESPEN--TDIWIVGGGDLAGQF 133

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS--DVCLEYI 355
            ++  +D IIL  + + + + G P+ +           V     G   ++ LE I
Sbjct: 134 FDAGALDRIILTMAPVFL-DEGQPA-MPRRIESNRLRTVNVREVGQFTEITLETI 186


>gi|209548305|ref|YP_002280222.1| CMP/dCMP deaminase zinc-binding [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534061|gb|ACI53996.1| CMP/dCMP deaminase zinc-binding [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 157

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 17/108 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA 63
             F+  A+  S+  +           ++VKDG VI R      T +    HAE+  ++ A
Sbjct: 5   EPFLREAIALSKSAMDQGDE--PFGSVLVKDGEVILRAENSVFTGHDMTNHAEMNLIKSA 62

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
            +          T Y + EPC+       C+  I   GI R+V    +
Sbjct: 63  AKHYDTGFLADCTLYTSTEPCAM------CSGAIYWSGIGRMVFACSE 104


>gi|54022594|ref|YP_116836.1| hypothetical protein nfa6270 [Nocardia farcinica IFM 10152]
 gi|54014102|dbj|BAD55472.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 184

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 8/119 (6%)

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
           +K+    P  + T  + P         N++ +  D R + + +    G G   + V GG 
Sbjct: 69  VKSYGDTPCWVFTHRELP----RVPGANLHFVAEDVRPVHERMREAAG-GAN-IWVVGGG 122

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
            +A  F ++ L+D +IL  + + +G G     L    L       +    G    L Y 
Sbjct: 123 DLAGQFADAGLLDELILAYAPVTLGAGA--PLLPRRILADRLTLTKSTTVGQFAMLTYR 179


>gi|291237544|ref|XP_002738694.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
          Length = 203

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 56/161 (34%), Gaps = 35/161 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGV----------------- 46
           S++  FM+ A   ++        +  V   IV +   ++G G                  
Sbjct: 47  SWEDYFMAVAFLSAQRSK---DPSSQVGACIVNEEKKIVGIGYNGMPIGCSDDVLPWRRK 103

Query: 47  ------TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A L +   + +G T YV L PC+       CA+ +I+  I+ 
Sbjct: 104 ADDELDTKYPYVCHAELNAILNKNSSDVKGCTMYVALFPCNE------CAKLVIQSKIKE 157

Query: 100 VVV-CVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
           VV       D        + L   G+     + S     L+
Sbjct: 158 VVYVSNKYHDTAGVTASRKMLDLAGVKYRYEVHSGMSNCLY 198


>gi|284054867|ref|ZP_06385077.1| tRNA-adenosine deaminase [Arthrospira platensis str. Paraca]
          Length = 87

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 12/80 (15%)

Query: 9  RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA 63
           +M  AL+      G     P V  LIV + G +I +G            HAE+ AL +A
Sbjct: 10 HWMQQALKLGA-AAGEAGEVP-VGALIVNQQGKLIAQGENRRERDPDPTAHAEIIALRQA 67

Query: 64 GE-----EARGATAYVTLEP 78
           +          T YVTLEP
Sbjct: 68 SQILGDWHLNTCTLYVTLEP 87


>gi|325955922|ref|YP_004286532.1| dCMP deaminase [Lactobacillus acidophilus 30SC]
 gi|325332487|gb|ADZ06395.1| dCMP deaminase [Lactobacillus acidophilus 30SC]
 gi|327182757|gb|AEA31204.1| dCMP deaminase [Lactobacillus amylovorus GRL 1118]
          Length = 159

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 55/144 (38%), Gaps = 34/144 (23%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------------- 53
             FM  AL  ++      +    V  ++VKD  +IG G      G P             
Sbjct: 9   QYFMMQALVIAQRSTCNRA---LVGSVLVKDHRIIGTGYNGSVSGQPHCDDVGHQMVDGH 65

Query: 54  -----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                H+E+ A+ +    G        YVT  PC +      C + +++ GI+++    D
Sbjct: 66  CVRTIHSEMNAIIQCAKFGVSTENTEIYVTHFPCYN------CCKALVQAGIKKINYYFD 119

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRM 129
             D  ++   L+ L   G+  +++
Sbjct: 120 YRDNPLA---LKLLHDCGVPYEQI 140


>gi|323465756|gb|ADX69443.1| DCMP deaminase [Lactobacillus helveticus H10]
          Length = 159

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 34/144 (23%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------------- 53
             FM  AL  ++      +    V  ++VKD  +IG G      G P             
Sbjct: 9   QYFMMQALVIAQRSTCNRA---LVGSVLVKDNRIIGTGYNGSVSGQPHCDEVGHQMVDGH 65

Query: 54  -----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                H+E+ A+ +    G        YVT  PC +      C + +++ G++++    D
Sbjct: 66  CVRTIHSEMNAIIQCAKFGVSTDDTEIYVTHFPCYN------CCKSLLQAGVKKINYYFD 119

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRM 129
             D  ++   +Q L   G+  +++
Sbjct: 120 YRDNPLA---MQLLHDCGVPYEQI 140


>gi|315037464|ref|YP_004031032.1| dCMP deaminase [Lactobacillus amylovorus GRL 1112]
 gi|312275597|gb|ADQ58237.1| dCMP deaminase [Lactobacillus amylovorus GRL 1112]
          Length = 159

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 55/144 (38%), Gaps = 34/144 (23%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------------- 53
             FM  AL  ++      +    V  ++VKD  +IG G      G P             
Sbjct: 9   QYFMMQALVIAQRSTCNRA---LVGSVLVKDHRIIGTGYNGSVSGQPHCDDVGHQMVDDH 65

Query: 54  -----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                H+E+ A+ +    G        YVT  PC +      C + +++ GI+++    D
Sbjct: 66  CVRTIHSEMNAIIQCAKFGVSTENTEIYVTHFPCYN------CCKALVQAGIKKINYYFD 119

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRM 129
             D  ++   L+ L   G+  +++
Sbjct: 120 YRDNPLA---LKLLHDCGVPYEQI 140


>gi|310831344|ref|YP_003969987.1| putative deoxycytidylate deaminase [Cafeteria roenbergensis virus
           BV-PW1]
 gi|309386528|gb|ADO67388.1| putative deoxycytidylate deaminase [Cafeteria roenbergensis virus
           BV-PW1]
          Length = 144

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 24/101 (23%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP---------------HAEVQALEEA---GEEARGATA 72
           V C+IVK+  +I  G   +                   HAE  A+ +    G     +  
Sbjct: 38  VGCVIVKNKRIIATGYNGFPPGVEHISILKEGKEINTIHAEQNAISQCAKMGISCENSVL 97

Query: 73  YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           YVT  PC +      C++ I+  GI  +    ++ + +   
Sbjct: 98  YVTHYPCIN------CSKIIVASGISTIYYLHNNHNDQSEP 132


>gi|315641043|ref|ZP_07896126.1| ComE operon protein ComEB [Enterococcus italicus DSM 15952]
 gi|315483212|gb|EFU73725.1| ComE operon protein ComEB [Enterococcus italicus DSM 15952]
          Length = 165

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 45/136 (33%), Gaps = 31/136 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            +D  FM+ A+  S            V   +VK+  +I  G                   
Sbjct: 7   PWDQYFMAQAVLLSLRSTCTRLE---VGATLVKEKRIIAGGYNGSVSGDTHCIDEGCAMV 63

Query: 54  --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE+ AL +    G    GA  YVT  PC        C + I++ GI+++  
Sbjct: 64  DGHCIRTIHAEMNALLQCAKFGISTNGAEIYVTHFPCLQ------CTKSILQAGIKKIHY 117

Query: 103 CVDDPDVRVSGRGLQW 118
             D  +   +   +  
Sbjct: 118 LHDYHNNLYAQELMAH 133


>gi|268317845|ref|YP_003291564.1| CMP/dCMP deaminase zinc-binding protein [Rhodothermus marinus DSM
           4252]
 gi|262335379|gb|ACY49176.1| CMP/dCMP deaminase zinc-binding protein [Rhodothermus marinus DSM
           4252]
          Length = 155

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 38/115 (33%), Gaps = 25/115 (21%)

Query: 8   ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59
             F+   +R +    R   G        A L+V+DG V+  G     T      HAE+ A
Sbjct: 4   EAFIREVIRLAEANVRRGGG------PFAALVVRDGEVLAAGTNRVTTDNDPTAHAEIVA 57

Query: 60  LEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           + EA          G   Y + EPC      P C   I      RV       D 
Sbjct: 58  IREACRRLGHFQLTGCDLYTSCEPC------PMCLGAIYWARPARVFYAATRHDA 106


>gi|195143831|ref|XP_002012900.1| GL23678 [Drosophila persimilis]
 gi|194101843|gb|EDW23886.1| GL23678 [Drosophila persimilis]
          Length = 160

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 23/114 (20%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE- 62
           A FM  AL  +R      +    V C+ V +  V+ RG            HAE   ++  
Sbjct: 2   AAFMEEALMEARRAR--DAGEVPVGCVFVHEDKVVARGANEVNVSRNATRHAEFICIDAI 59

Query: 63  ----------AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
                     A +        VT+EPC        C+  +   G++ ++   ++
Sbjct: 60  LAYCREKNLPARQMFSEIIVVVTVEPCIM------CSAALHTLGVQEIIFGCEN 107


>gi|149187333|ref|ZP_01865631.1| Dihydrofolate reductase [Vibrio shilonii AK1]
 gi|148838869|gb|EDL55808.1| Dihydrofolate reductase [Vibrio shilonii AK1]
          Length = 176

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 61/197 (30%), Gaps = 41/197 (20%)

Query: 156 IAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
           I  S D  I     G   +        S         + D +++G  T+           
Sbjct: 7   IGTSLDGYIADKNNGLDWLHDVPNPEGSDFGFAEFMDRVDGLVMGRNTLE---------- 56

Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD 271
                     I+L    +      +    +L+  +              + K        
Sbjct: 57  ----------IVLSFGIEWPYSRPVF---VLSNTLTKVPEGYEDKVFLVKGK-------- 95

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
              L  +++ L  +G  +L ++GG     SF+   L+D +I+    +++G GGIP    E
Sbjct: 96  ---LSDIVSDLNSKGYKNLYIDGG-KTIQSFLAEDLIDEMIITTIPVLLG-GGIP-LFGE 149

Query: 332 GYLEKNFMCVRRDYFGS 348
                 F  V  + +  
Sbjct: 150 LDKPLKFQHVSAERYAD 166


>gi|314055285|ref|YP_004063623.1| putative CMP/dCMP deaminase zinc-binding [Ostreococcus tauri virus
           2]
 gi|313575176|emb|CBI70189.1| putative CMP/dCMP deaminase zinc-binding [Ostreococcus tauri virus
           2]
          Length = 136

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 27/122 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           S++  FM  A   +         N  V C++VK+  +I  G   + G             
Sbjct: 6   SWNEYFMKTA-ELASVRSPCDRLN--VGCVLVKNNRLISMGYNGFLGGSNHTSIVRDGHE 62

Query: 54  ----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               HAE+ A+ +A   G    G   Y+T  PC +      C + +   G++++    D 
Sbjct: 63  QATIHAEINAVTDAAKRGVSIDGTEVYITHYPCLN------CYKALASSGVKKIHYKNDY 116

Query: 107 PD 108
            +
Sbjct: 117 KN 118


>gi|269102860|ref|ZP_06155557.1| dihydrofolate reductase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268162758|gb|EEZ41254.1| dihydrofolate reductase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 177

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 65/204 (31%), Gaps = 47/204 (23%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTV---LA 202
               + IA S D  I         +        S         + DA+++G  TV   L+
Sbjct: 1   MPNIVYIATSLDGYIADKNNQLDWLHDVPNPDGSDFGFAEFMDRVDALIMGRNTVGMVLS 60

Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
            D              P+ +       LS   K +       + +V              
Sbjct: 61  FD-------CEWPYSKPVYV-------LSNTMKTVPAGYEDKIYLVNGE----------- 95

Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
                       L  ++  L  +G+T+L ++GG     SF+   ++D +I+     ++G 
Sbjct: 96  ------------LPTIVEELQQKGLTTLYIDGG-KTIQSFLQQDMIDELIITTIPTILG- 141

Query: 323 GGIPSPLEEGYLEKNFMCVRRDYF 346
           GGIP    E      F  ++ +  
Sbjct: 142 GGIP-LFGELDKPLKFKHIKAEQL 164


>gi|330447957|ref|ZP_08311605.1| bifunctional deaminase-reductase domain protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328492148|dbj|GAA06102.1| bifunctional deaminase-reductase domain protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 188

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%)

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           IIV  N         R+     +     D+++L+T L   G     ++GG     +FIN 
Sbjct: 80  IIVLSNTVKQAPENVREH----VEMYSGDIQELMTKLESEGHQHAYIDGG-KTIQAFINC 134

Query: 306 RLVDSIILYRSQIVIGEG 323
           +L+D I +  + +++GEG
Sbjct: 135 QLIDEINITYAPVLLGEG 152


>gi|256831602|ref|YP_003160329.1| CMP/dCMP deaminase zinc-binding [Jonesia denitrificans DSM 20603]
 gi|256685133|gb|ACV08026.1| CMP/dCMP deaminase zinc-binding [Jonesia denitrificans DSM 20603]
          Length = 154

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 17/122 (13%)

Query: 11  MSAALRFSRWHVGLTST-NPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAG 64
           M  AL  +R  + L    +  +  +I+   G  I               HAE+ A+ +A 
Sbjct: 1   MDDALTEARRALRLHGPPDVPIGAVIIDAHGHTIAAAHNERELTQDPTAHAEILAIRKAA 60

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                      T  VTLEPC+       CA  I+   I R+V+   DP    +G     +
Sbjct: 61  THLGTWRLDQCTLVVTLEPCAM------CAGAIVLARIPRIVIGAWDPKAGATGSVFDIV 114

Query: 120 SQ 121
             
Sbjct: 115 RA 116


>gi|212533865|ref|XP_002147089.1| DRAP deaminase, putative [Penicillium marneffei ATCC 18224]
 gi|210072453|gb|EEA26542.1| DRAP deaminase, putative [Penicillium marneffei ATCC 18224]
          Length = 240

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 57/176 (32%), Gaps = 44/176 (25%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACL-IVKD---------GIVIGRGVTAY-G 50
           P  S   +++   L+ +        TN  V  + I++            ++  G T    
Sbjct: 12  PSGSSHLKYLRECLKLAENSPPR-PTNFRVGAILILRHDTPDDTSDDDKILSTGYTMELP 70

Query: 51  GCPHAEVQALEE-------------------AGEEARGATAYVTLEPCS-HYGRSPPCAQ 90
           G  HAE   L+                    A    R    YVT+EPC      + PC  
Sbjct: 71  GNTHAEQCCLQNYAAAHGVYEESVADAFPPAAERNGRKILLYVTMEPCGVRLSGNRPCVH 130

Query: 91  FIIEC-----------GIRRVVVCVDDPDVRVSGRG-LQWLSQKGIIVDRMMESEG 134
            II+            GI +V   V +P   V      + L++ G+  + +   E 
Sbjct: 131 RIIQTRKSSNDSNNNNGIDKVYFGVKEPGTFVGESQGCKMLTEAGVQWEFVGGLEN 186


>gi|312792827|ref|YP_004025750.1| cmp/dcmp deaminase zinc-binding protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179967|gb|ADQ40137.1| CMP/dCMP deaminase zinc-binding protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 154

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 43/131 (32%), Gaps = 40/131 (30%)

Query: 31  VACLIVKDGIVIGRGV---------------------------TAYGGCPHAEVQALEEA 63
           V  LIVKD  ++  G                                   HAE  A+ +A
Sbjct: 27  VGALIVKDKRILATGYNGAPTGLPHCEEVGCLREKLNVPSGQRHELCRGLHAEQNAIIQA 86

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G    G+  Y T  PC        CA+ I+  GI++V+     PD        Q   
Sbjct: 87  AKMGVVIDGSVIYTTTYPCVI------CAKMIVNAGIKKVIYKGSYPDEMSQ----QIFR 136

Query: 121 QKGIIVDRMME 131
           + GI V +  E
Sbjct: 137 EAGIEVVKFEE 147


>gi|198451012|ref|XP_001358211.2| GA18791 [Drosophila pseudoobscura pseudoobscura]
 gi|198131295|gb|EAL27348.2| GA18791 [Drosophila pseudoobscura pseudoobscura]
          Length = 160

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 23/114 (20%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE- 62
           A FM  AL  +R      +    V C+ V +  V+ RG            HAE   ++  
Sbjct: 2   AAFMEEALMEARRAR--DAGEVPVGCVFVHEDKVVARGANEVNVSRNATRHAEFICIDAI 59

Query: 63  ----------AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
                     A +        VT+EPC        C+  +   G++ ++   ++
Sbjct: 60  LAYCREKNLPARQMFSEIIVVVTVEPCIM------CSAALHTLGVQEIIFGCEN 107


>gi|171741935|ref|ZP_02917742.1| hypothetical protein BIFDEN_01034 [Bifidobacterium dentium ATCC
           27678]
 gi|306824050|ref|ZP_07457423.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Bifidobacterium dentium ATCC 27679]
 gi|309800761|ref|ZP_07694896.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bifidobacterium dentium JCVIHMP022]
 gi|171277549|gb|EDT45210.1| hypothetical protein BIFDEN_01034 [Bifidobacterium dentium ATCC
           27678]
 gi|304552703|gb|EFM40617.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Bifidobacterium dentium ATCC 27679]
 gi|308222606|gb|EFO78883.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bifidobacterium dentium JCVIHMP022]
          Length = 151

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 47/128 (36%), Gaps = 21/128 (16%)

Query: 30  SVACLIVKD-GIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPC 79
            V  +++   G VIGRG            HAEV+A+ EA            T  VTLEPC
Sbjct: 24  PVGAVVLDAAGQVIGRGRNLREADRDPLAHAEVKAMTEAAHALGTWNLADCTLIVTLEPC 83

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEG 134
                 P CA   ++  I R+V    D  +   G          I     ++  M ESE 
Sbjct: 84  ------PMCAGACLQTHIGRIVFGAWDAKLGACGSVWDIPRDPHIGSVPEVIGGMHESEC 137

Query: 135 KIFLHAYL 142
              L  + 
Sbjct: 138 ARILTDFF 145


>gi|330719293|ref|ZP_08313893.1| ComE operon protein 2 [Leuconostoc fallax KCTC 3537]
          Length = 153

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 47/136 (34%), Gaps = 31/136 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
           S+D  F++ A   S            V  +IVK+  +I  G      G P          
Sbjct: 8   SWDQYFIAQAAILSTRSTCNRL---HVGAIIVKNHRIIASGYNGSIAGTPHCTEVGDLIV 64

Query: 54  --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  AL +A   G    GA  YVT  PC        C + +++ GI+ +  
Sbjct: 65  DGHCVRAVHAEQNALMQAAQMGISVDGAELYVTDMPCLQ------CTKLLLQAGIQTIKF 118

Query: 103 CVDDPDVRVSGRGLQW 118
             D  +   +   L  
Sbjct: 119 MRDYHNDTFANELLTQ 134


>gi|259500880|ref|ZP_05743782.1| competence protein ComEB [Lactobacillus iners DSM 13335]
 gi|302190667|ref|ZP_07266921.1| ComE operon protein 2 [Lactobacillus iners AB-1]
 gi|309803656|ref|ZP_07697746.1| putative ComE operon protein 2 [Lactobacillus iners LactinV 11V1-d]
 gi|309805762|ref|ZP_07699799.1| putative ComE operon protein 2 [Lactobacillus iners LactinV 09V1-c]
 gi|309805965|ref|ZP_07699992.1| putative ComE operon protein 2 [Lactobacillus iners LactinV 03V1-b]
 gi|309809164|ref|ZP_07703037.1| putative ComE operon protein 2 [Lactobacillus iners SPIN 2503V10-D]
 gi|312871238|ref|ZP_07731336.1| putative ComE operon protein 2 [Lactobacillus iners LEAF 3008A-a]
 gi|312872692|ref|ZP_07732757.1| putative ComE operon protein 2 [Lactobacillus iners LEAF 2062A-h1]
 gi|312874090|ref|ZP_07734125.1| putative ComE operon protein 2 [Lactobacillus iners LEAF 2052A-d]
 gi|312874953|ref|ZP_07734972.1| putative ComE operon protein 2 [Lactobacillus iners LEAF 2053A-b]
 gi|315654038|ref|ZP_07906954.1| competence protein comEB [Lactobacillus iners ATCC 55195]
 gi|329920925|ref|ZP_08277474.1| putative ComE operon protein 2 [Lactobacillus iners SPIN 1401G]
 gi|259167574|gb|EEW52069.1| competence protein ComEB [Lactobacillus iners DSM 13335]
 gi|308164254|gb|EFO66511.1| putative ComE operon protein 2 [Lactobacillus iners LactinV 11V1-d]
 gi|308164882|gb|EFO67128.1| putative ComE operon protein 2 [Lactobacillus iners LactinV 09V1-c]
 gi|308167647|gb|EFO69799.1| putative ComE operon protein 2 [Lactobacillus iners LactinV 03V1-b]
 gi|308170609|gb|EFO72629.1| putative ComE operon protein 2 [Lactobacillus iners SPIN 2503V10-D]
 gi|311089698|gb|EFQ48123.1| putative ComE operon protein 2 [Lactobacillus iners LEAF 2053A-b]
 gi|311090430|gb|EFQ48839.1| putative ComE operon protein 2 [Lactobacillus iners LEAF 2052A-d]
 gi|311091734|gb|EFQ50113.1| putative ComE operon protein 2 [Lactobacillus iners LEAF 2062A-h1]
 gi|311093252|gb|EFQ51598.1| putative ComE operon protein 2 [Lactobacillus iners LEAF 3008A-a]
 gi|315488734|gb|EFU78380.1| competence protein comEB [Lactobacillus iners ATCC 55195]
 gi|328935490|gb|EGG31961.1| putative ComE operon protein 2 [Lactobacillus iners SPIN 1401G]
          Length = 157

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 53/153 (34%), Gaps = 34/153 (22%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP------------- 53
             FM  AL  S+     T     V  ++VKD  +I  G      G P             
Sbjct: 10  QYFMMQALVISQRS---TCDRALVGSVLVKDKRMIATGYNGSVTGEPHCDDEGHLMVDGH 66

Query: 54  -----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                H+E+ AL +    G    G   YVT  PC +      C + +++ GI  V     
Sbjct: 67  CVRTIHSEMNALIQCAKNGISTEGCAIYVTHFPCFN------CTKALVQAGIVEVNY--- 117

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138
             D R +   +  LS K I V ++      +  
Sbjct: 118 YYDYRDNPLVMALLSDKHIKVQKINIDRKYLHN 150


>gi|154487580|ref|ZP_02028987.1| hypothetical protein BIFADO_01437 [Bifidobacterium adolescentis
           L2-32]
 gi|154083709|gb|EDN82754.1| hypothetical protein BIFADO_01437 [Bifidobacterium adolescentis
           L2-32]
          Length = 149

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 48/128 (37%), Gaps = 21/128 (16%)

Query: 30  SVACLIVK-DGIVIGRGV----TAYGGCPHAEVQALEEAGEE-----ARGATAYVTLEPC 79
            V  +++  DG  IGRG     T      HAEVQA+ EA            T  VTLEPC
Sbjct: 24  PVGAVVLDADGRAIGRGRNLRETHADPLAHAEVQAMREAAASLGTWNLADCTLVVTLEPC 83

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEG 134
                 P CA   ++  + R+V    D  +   G          +     +V  + E+E 
Sbjct: 84  ------PMCAGACLQTHVGRIVFGAWDAKLGACGSVWDIPRDPHVGPVPEVVGGVCEAEC 137

Query: 135 KIFLHAYL 142
              +  + 
Sbjct: 138 GRLMTDFF 145


>gi|91202838|emb|CAJ72477.1| similar to dCMP deaminase [Candidatus Kuenenia stuttgartiensis]
          Length = 158

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 48/135 (35%), Gaps = 39/135 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D  F+      +R    L      V  ++V +  ++  G                   
Sbjct: 6   SWDEYFLRITKEVARRSTCLRR---QVGAVLVLEKHILATGYNGAPSGLQHCLEIGCLRE 62

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE+ AL +A   G +  GAT Y T  PCS       CA+ ++ 
Sbjct: 63  QLRVPPGERHELCRGLHAEMNALIQAARYGIKISGATLYSTTCPCS------LCAKMLVN 116

Query: 95  CGIRRVVVCVDDPDV 109
            GI+R+V   D PD 
Sbjct: 117 AGIKRIVAISDYPDA 131


>gi|49475071|ref|YP_033112.1| nitrogen fixation protein [Bartonella henselae str. Houston-1]
 gi|49237876|emb|CAF27072.1| Nitrogen fixation protein [Bartonella henselae str. Houston-1]
          Length = 148

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 53/161 (32%), Gaps = 27/161 (16%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56
           M ++      M  AL  ++W          V  +I +   +I R       AY    HAE
Sbjct: 1   MTLTP-----MEIALLEAQWAA--KKDEVPVGAVITRGQSIIVRAGNSIKAAYDPTGHAE 53

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           ++ +  A      E       YVTLEPC+       CA  I    IRR+     DP    
Sbjct: 54  IRVIRMACAAFQSERLPDCDLYVTLEPCAM------CAAAISFARIRRLYYATSDPKGGA 107

Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVE 147
              G +   Q        +     E E    L  +  ++  
Sbjct: 108 IEHGPRLYKQSTCHHSPEVYSGFKEKEAAQLLKDFFAQKRC 148


>gi|320160102|ref|YP_004173326.1| dihydrofolate reductase [Anaerolinea thermophila UNI-1]
 gi|319993955|dbj|BAJ62726.1| dihydrofolate reductase [Anaerolinea thermophila UNI-1]
          Length = 187

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 54/175 (30%), Gaps = 37/175 (21%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR--AQSDAILVGIGTVLADDPELT 208
             ++ +A+S D  I     G   +            R     D +L+G  T         
Sbjct: 12  RCSVFMALSLDGFIARPDGGLDWLPQPEPGEDYGYTRFIETVDTVLMGRNT--------- 62

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
                           D              A  + V++ T    P+   A     +  +
Sbjct: 63  ---------------FDQVLTFPE----YPYADQSVVVLTTR---PLALPAHLAGKVQWM 100

Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
             +     ++L  L  +G   + V+GG      F+ + L+  IIL    +++G G
Sbjct: 101 QGE---PAQILARLAEQGARHVYVDGG-ETIRRFLRAGLIQDIILTHVPVLLGRG 151


>gi|220908332|ref|YP_002483643.1| bifunctional deaminase-reductase domain-containing protein
           [Cyanothece sp. PCC 7425]
 gi|219864943|gb|ACL45282.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC
           7425]
          Length = 177

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 8/80 (10%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P  + +           +   + +   D      ++T L   G+  + + GG  +A +F 
Sbjct: 70  PCWVCS-------KQQLQPTQLQVNVTDKA-PGAIVTELAQLGLRRVWLVGGGELAGAFQ 121

Query: 304 NSRLVDSIILYRSQIVIGEG 323
              L+D  I+    +V+G G
Sbjct: 122 RQGLLDEYIISVIPVVLGAG 141


>gi|322412648|gb|EFY03556.1| ComE operon protein 2 [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 155

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 36/144 (25%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY---------GG-------- 51
            FM+ A   S+     T     V  ++VKD  +I  G              G        
Sbjct: 10  YFMANAELISKRS---TCDRAFVGAVLVKDNRIIATGYNGGVSATDNCNEAGHYMEDGHC 66

Query: 52  --CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV-CVD 105
               HAE+ AL +    G    G   YVT  PC +      C + +++ GI+++      
Sbjct: 67  IRTVHAEMNALIQCAKEGISTDGTEIYVTHFPCIN------CTKALLQAGIKKITYKAHY 120

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRM 129
            P        ++ + +KG+   + 
Sbjct: 121 RPHPFA----IELMEKKGVAYVQH 140


>gi|209809706|ref|YP_002265245.1| putative cytidine and deoxycytidylate deaminase [Aliivibrio
           salmonicida LFI1238]
 gi|21311445|gb|AAM46726.1|AF452135_11 RibG [Aliivibrio salmonicida]
 gi|208011269|emb|CAQ81710.1| putative cytidine and deoxycytidylate deaminase [Aliivibrio
           salmonicida LFI1238]
          Length = 147

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 49/155 (31%), Gaps = 35/155 (22%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPS--VACLIVKDGIVIGRGVTAYGGCP------- 53
           VS +  RF   A       VG  S +PS  V  +I K   ++  G   Y           
Sbjct: 2   VSKWAKRFFQMA-EL----VGSWSKDPSTQVGAVITKHNRIVSVGFNGYPHGVSDSADTD 56

Query: 54  ----------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                     HAE  A+  A  +      +VT  PC      P CA  II+ GI +V   
Sbjct: 57  DRELKYLKTLHAEENAILFAKRDLEDCDIWVTHFPC------PNCAAKIIQTGISKVYCP 110

Query: 104 VDDPD-----VRVSGRGLQWLSQKGIIVDRMMESE 133
               D                SQ G+ V  +    
Sbjct: 111 EQTEDFLSRWGEKIQISQDMFSQAGVEVTWLPLDA 145


>gi|85090433|ref|XP_958414.1| cytosine deaminase [Neurospora crassa OR74A]
 gi|28919775|gb|EAA29178.1| cytosine deaminase [Neurospora crassa OR74A]
          Length = 159

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 54/144 (37%), Gaps = 18/144 (12%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALE 61
            DA  ++ A + ++         P  A LI   GIV+GRG            H E   L 
Sbjct: 2   DDAAGLAIAFKEAKKS-YEQGGIPIGAALISSTGIVLGRGHNQRVQLDSPIHHGETATLL 60

Query: 62  EAGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
            AG         +T Y TL PC        C   I+   IRRVV+  +            
Sbjct: 61  NAGRLPASTYANSTMYTTLSPCDM------CTGAILLYKIRRVVIGENSTFKAAGE---D 111

Query: 118 WLSQKGIIVDRMMESEGKIFLHAY 141
           +L Q+G+ V  M + E +  +  +
Sbjct: 112 YLRQRGVEVVVMDDQECRTLMERF 135


>gi|241203539|ref|YP_002974635.1| CMP/dCMP deaminase zinc-binding [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857429|gb|ACS55096.1| CMP/dCMP deaminase zinc-binding [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 158

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 17/108 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA 63
             F+  A+  S+  +           ++VKDG VI R      T +    HAE+  ++ A
Sbjct: 5   EPFLREAIALSKSAMANGDE--PFGSVLVKDGEVILRAENSVFTGHDMTNHAEMNLVKLA 62

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
            +        G T Y + EPC+       C+  I   GI R+V    +
Sbjct: 63  AQHYDTAFLAGCTLYTSTEPCAM------CSGAIYWSGIGRMVFACSE 104


>gi|332295153|ref|YP_004437076.1| CMP/dCMP deaminase zinc-binding protein [Thermodesulfobium
           narugense DSM 14796]
 gi|332178256|gb|AEE13945.1| CMP/dCMP deaminase zinc-binding protein [Thermodesulfobium
           narugense DSM 14796]
          Length = 154

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 20/122 (16%)

Query: 30  SVACLIVKDGIVIGRG--VTAYGGCP--HAEVQALEEAGEE-----ARGATAYVTLEPCS 80
            +  +I K+G ++            P  HAE+ A+++A +       +G+T Y +LEPC 
Sbjct: 23  PIGAIICKEGNILSMSQNFCERSNSPIEHAEILAIKKAIQRYNRWYIQGSTIYCSLEPCL 82

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
                  CA  IIEC I+ V+ CV   +        Q L    I    M +   +  +  
Sbjct: 83  M------CAGAIIECKIKNVIFCVSSKN-----STRQILESNDIFCIEMFDERFRNLIER 131

Query: 141 YL 142
           + 
Sbjct: 132 FF 133


>gi|221066605|ref|ZP_03542710.1| CMP/dCMP deaminase zinc-binding [Comamonas testosteroni KF-1]
 gi|220711628|gb|EED66996.1| CMP/dCMP deaminase zinc-binding [Comamonas testosteroni KF-1]
          Length = 146

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 17/108 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE---- 62
           M  A+  +  +            ++ +   V+  GV      +    HAE+QA+      
Sbjct: 1   MRLAVNLAHANRLQGGR--PFGAVLAQGNEVVATGVNEIIASHDPSTHAEMQAIRAGTQQ 58

Query: 63  -AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
            A     G + Y +  PC      P C   ++  G  +V    D+ D 
Sbjct: 59  RANPSLAGLSIYASGHPC------PMCLAALVMNGAEQVFFAFDNQDA 100


>gi|71904197|ref|YP_281000.1| ComE operon protein 2 [Streptococcus pyogenes MGAS6180]
 gi|251783268|ref|YP_002997573.1| ComE operon protein 2 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|71803292|gb|AAX72645.1| ComE operon protein 2 [Streptococcus pyogenes MGAS6180]
 gi|242391900|dbj|BAH82359.1| ComE operon protein 2 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323127992|gb|ADX25289.1| ComE operon protein 2 [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 155

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 36/144 (25%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY---------GG-------- 51
            FM+ A   S+     T     V  ++VKD  +I  G              G        
Sbjct: 10  YFMANAELISKRS---TCDRAFVGAVLVKDNRIIATGYNGGVSATDNCNEAGHYMEDGHC 66

Query: 52  --CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV-CVD 105
               HAE+ AL +    G    G   YVT  PC +      C + +++ GI+++      
Sbjct: 67  IRTVHAEMNALIQCAKEGISTDGTEIYVTHFPCIN------CTKALLQAGIKKITYKAHY 120

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRM 129
            P        ++ + +KG+   + 
Sbjct: 121 RPHPFA----IELMEKKGVAYVQH 140


>gi|194333660|ref|YP_002015520.1| CMP/dCMP deaminase [Prosthecochloris aestuarii DSM 271]
 gi|194311478|gb|ACF45873.1| CMP/dCMP deaminase zinc-binding [Prosthecochloris aestuarii DSM
           271]
          Length = 174

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 48/148 (32%), Gaps = 44/148 (29%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP------------- 53
             FMS A   ++     T  +  +  ++V+D  ++  G      G P             
Sbjct: 30  EYFMSVAHLIAKRA-TCTRGH--IGAVVVRDNNILSTGYNGAPSGLPHCNETNCKIYRSV 86

Query: 54  --------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                         HAE+ A+ +A   G   + A  Y+T  PC H      C + +I  G
Sbjct: 87  HPDGTVEENCVNTIHAEINAIAQAAKHGVSIKDADIYITASPCIH------CLKVLINVG 140

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           IR +                + L   GI
Sbjct: 141 IRTIYY----DKPYKIEHISELLRLSGI 164


>gi|78212739|ref|YP_381518.1| tRNA-adenosine deaminase [Synechococcus sp. CC9605]
 gi|78197198|gb|ABB34963.1| cytidine/deoxycytidylate deaminase family protein [Synechococcus
           sp. CC9605]
          Length = 174

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 49/124 (39%), Gaps = 18/124 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEA 63
           R+M   L+ +   VGL    P VA +I+   G  IG G            HAE+ AL++A
Sbjct: 26  RWMDVLLQRAE-GVGLEGEVP-VAAVILDGQGRAIGHGRNRRENNRDPLGHAELVALQQA 83

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T  VTLEPC      P CA  +++  +  VV    DP     G  L  
Sbjct: 84  AIVQNDWRFNNCTLIVTLEPC------PMCAGALVQARMGTVVFAASDPKRGGLGGSLDL 137

Query: 119 LSQK 122
            +  
Sbjct: 138 STHA 141


>gi|82701279|ref|YP_410845.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Nitrosospira multiformis ATCC 25196]
 gi|82409344|gb|ABB73453.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
           [Nitrosospira multiformis ATCC 25196]
          Length = 147

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 17/115 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
           S    F+  A+R ++ +    S     A ++V +G  +  GV           HAE++A+
Sbjct: 2   SQHETFLREAVRLAKNNRERGSR--PFAAVLVVEGQAVSTGVNDVVQSNDPTTHAEMEAV 59

Query: 61  EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
             A       + RG+  Y +  PC      P C   ++  G+  V    D+ D  
Sbjct: 60  RAASRKLGRPDLRGSIVYASGHPC------PMCLAAMVIAGVDAVYYAFDNDDAE 108


>gi|322696336|gb|EFY88130.1| CMP/dCMP deaminase, zinc-binding protein [Metarhizium acridum CQMa
           102]
          Length = 474

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
           RF+  AL  +R  +  T+  P V C++V +G VI +G+ A      G  HAE  A+
Sbjct: 155 RFIEEALDMARLAL-RTNETP-VGCVLVHNGTVIAKGMNATNVTRNGTRHAEFMAI 208


>gi|313665291|ref|YP_004047162.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Mycoplasma leachii PG50]
 gi|312949249|gb|ADR23845.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Mycoplasma leachii PG50]
          Length = 160

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 42/128 (32%), Gaps = 33/128 (25%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT------------------- 47
             FM  A   +         N  V  ++V +   ++  G                     
Sbjct: 12  HYFMLIAKASAMRSK---DPNTQVGAIVVNELQQIVATGYNGFPRGVSDDDFPWSKTNED 68

Query: 48  ----AYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                Y    HAE+ A+  +  +      YVTL PC+       CA+ II+ GI+R+   
Sbjct: 69  WLENKYAYVAHAELNAIVSSRSDLSNCDLYVTLFPCNE------CAKIIIQAGIKRIYYA 122

Query: 104 VDDPDVRV 111
            D    + 
Sbjct: 123 NDPYHQKK 130


>gi|290579815|ref|YP_003484207.1| putative deoxycytidylate deaminase [Streptococcus mutans NN2025]
 gi|254996714|dbj|BAH87315.1| putative deoxycytidylate deaminase [Streptococcus mutans NN2025]
          Length = 150

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 31/140 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG--------- 51
           M   S+   FM+ A   S+      +    V  ++VK+  +I  G               
Sbjct: 2   MNRLSWQDYFMANAELISKRSTCNRA---YVGAVLVKNNRIIATGYNGGVADTDNCDDVG 58

Query: 52  ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ AL +    G  A     YVT  PC +      C + +++ G++
Sbjct: 59  HEMEDGHCIRTVHAEMNALIQCAKEGISANNTEIYVTHFPCIN------CTKALLQAGVK 112

Query: 99  RVVVCVDDPDVRVSGRGLQW 118
           ++           +   +  
Sbjct: 113 KITYNTAYRIHPFAIELMTQ 132


>gi|83319549|ref|YP_424377.1| deoxycytidylate deaminase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|83283435|gb|ABC01367.1| probable deoxycytidylate deaminase [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 153

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 42/128 (32%), Gaps = 33/128 (25%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT------------------- 47
             FM  A   +         N  V  ++V +   ++  G                     
Sbjct: 5   HYFMLIAKASAMRSK---DPNTQVGAIVVNELQQIVATGYNGFPRGVSDDDFPWSKTNED 61

Query: 48  ----AYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                Y    HAE+ A+  +  +      YVTL PC+       CA+ II+ GI+R+   
Sbjct: 62  WLENKYAYVAHAELNAIVSSRSDLSNCDLYVTLFPCNE------CAKIIIQAGIKRIYYA 115

Query: 104 VDDPDVRV 111
            D    + 
Sbjct: 116 NDPYHQKK 123


>gi|53804410|ref|YP_113955.1| zinc-binding domain-containing protein [Methylococcus capsulatus
          str. Bath]
 gi|53758171|gb|AAU92462.1| zinc-binding domain protein [Methylococcus capsulatus str. Bath]
          Length = 164

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 9/87 (10%)

Query: 5  SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
            D  +M  A++  R    +  T      +IV+ G V+     +         HAE+ A+
Sbjct: 9  EQDRAYMRLAIQTMRRAGIVDRTGGPFGAVIVRGGQVLAVAGNSVIRDNDPTAHAEINAI 68

Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
           EA       +  GA  Y + E C   
Sbjct: 69 REACRRIGSYDLSGAVLYSSCECCPMC 95


>gi|54022333|ref|YP_116575.1| hypothetical protein nfa3690 [Nocardia farcinica IFM 10152]
 gi|54013841|dbj|BAD55211.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 183

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           GGA +A S I   LVD   ++ S +V+G G    P+ +  L          +F + V L 
Sbjct: 122 GGATLAASLIPHGLVDEYQMFVSPVVLGGGTPYFPVLDTRL--RLRLAETRHFKTAVLLR 179

Query: 354 YI 355
           Y+
Sbjct: 180 YV 181


>gi|328709609|ref|XP_001952788.2| PREDICTED: hypothetical protein LOC100161474 [Acyrthosiphon pisum]
          Length = 373

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 52/145 (35%), Gaps = 25/145 (17%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT-------------AYG 50
           S+D  FM+ A   ++ +  L      V   IV  D  ++G G                  
Sbjct: 69  SWDDLFMAIAFLTAKCNKDLKKK---VGACIVDSDKKIVGIGYNGMPTGCNNGNFLDHKF 125

Query: 51  GCPHAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
              HAE+ A+        +  T +V+L PCS        A+ II+ GI+ VV  + D   
Sbjct: 126 AQCHAEMNAILNKNSIHIQNCTIFVSLYPCSE------AAKIIIQSGIKEVVY-MPDLKS 178

Query: 110 RVSGRGLQWLSQKGIIVDRMMESEG 134
                  +     G+ +     ++ 
Sbjct: 179 SKDQATKKMFDASGVEIREHTPNQN 203



 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 44/138 (31%), Gaps = 34/138 (24%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGC---------------- 52
           FM+ A   +            V   IV  D  ++G G                       
Sbjct: 223 FMAIAYLTAMRSK---DPVCQVGACIVNSDNTIVGTGYNGMPTGCNDDEFPWGNNKNLTL 279

Query: 53  ------PHAEVQAL--EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                  HAE+ A+  + +    +  T YVT  PC        CA+ II+ GI+ VV   
Sbjct: 280 NKFIYVCHAEMNAVFYKSSMINVKDCTLYVTRFPCIE------CAKIIIQSGIKEVVYLT 333

Query: 105 DDPDVRVSGRGLQWLSQK 122
           +    +      + L + 
Sbjct: 334 NPKYGKGKDTATKDLFKA 351


>gi|146306335|ref|YP_001186800.1| deaminase-reductase domain-containing protein [Pseudomonas
           mendocina ymp]
 gi|145574536|gb|ABP84068.1| bifunctional deaminase-reductase domain protein [Pseudomonas
           mendocina ymp]
          Length = 192

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 62/203 (30%), Gaps = 48/203 (23%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGF------ISKNQVHLLRAQSDAILVGIGTVLAD 203
             +   +  S D  I                    S    +   A  DA+L+G GT  A 
Sbjct: 3   PTLIYHVTASLDGYIARPDGRLDWFDTPRQPDEEYSFQYFY---AGIDALLMGRGTYEA- 58

Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
                              +L          K        P +++T      L L     
Sbjct: 59  -------------------LLKRGGPWPYPGK--------PCVVLTR-----LELPRAGD 86

Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            + + +C      + +  L   G   + + GG+ +A S   + L+D +++     ++G G
Sbjct: 87  EVQLTHC---TPAQAVDALREAGFQRIWLVGGSLLAGSCYTAGLIDEVVINLVPHLLGAG 143

Query: 324 GIPSPLEEGYLEKNFMCVRRDYF 346
               PL    +E++     +  F
Sbjct: 144 ---IPLLATGMERSLTLSEQRPF 163


>gi|169825268|ref|YP_001692879.1| putative late competence protein required for DNA binding
           [Finegoldia magna ATCC 29328]
 gi|167832073|dbj|BAG08989.1| putative late competence protein required for DNA binding
           [Finegoldia magna ATCC 29328]
          Length = 139

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 54/148 (36%), Gaps = 35/148 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV---------------TA 48
           S++  FM  AL  +      T     V C++V  D  ++  G                T 
Sbjct: 4   SWNEYFMDLALNVATRS---TCDRAFVGCVLVNSDNRIVSTGYNGAISGNPHCDEVGHTL 60

Query: 49  YGG----CPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
             G      HAE+ AL    + G   +G   YVT  PC +      C + +I+ GI ++ 
Sbjct: 61  RDGHCIATIHAEMNALLYCAKEGIAVKGCICYVTHFPCLN------CTKSLIQAGISKIY 114

Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
                   RV    ++ L +  I   ++
Sbjct: 115 Y---HEAYRVDDYAIELLDRNNIEYVQI 139


>gi|318041317|ref|ZP_07973273.1| cytidine/deoxycytidylate deaminase family protein [Synechococcus
           sp. CB0101]
          Length = 178

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 18/109 (16%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           +M   LR +   VG     P  A ++   G  +G G            HAE+ AL++A  
Sbjct: 17  WMQRLLRRAE-AVGCEGEIPVAAVVLDAQGRAVGWGSNRRERDQQPLGHAELMALQQA-A 74

Query: 66  EARG------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
             RG       T  VTLEPC      P CA  +++  + +VV    DP 
Sbjct: 75  RLRGDWRFNDCTLLVTLEPC------PMCAGALVQARVGQVVFGAHDPK 117


>gi|222528649|ref|YP_002572531.1| CMP/dCMP deaminase zinc-binding [Caldicellulosiruptor bescii DSM
           6725]
 gi|222455496|gb|ACM59758.1| CMP/dCMP deaminase zinc-binding [Caldicellulosiruptor bescii DSM
           6725]
          Length = 148

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 43/132 (32%), Gaps = 40/132 (30%)

Query: 31  VACLIVKDGIVIGRGV---------------------------TAYGGCPHAEVQALEEA 63
           V  LIVKD  ++  G                                   HAE  A+ +A
Sbjct: 27  VGALIVKDKRILATGYNGAPTGLPHCDEVGCLREKLNVPSGQRHELCRGLHAEQNAIIQA 86

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G    G+  Y T  PC        CA+ I+  GI++V+     PD        Q   
Sbjct: 87  AKMGVVIDGSVIYTTTYPCVI------CAKMIVNAGIKKVIYKGSYPDEMSQ----QIFK 136

Query: 121 QKGIIVDRMMES 132
           + GI V +  E 
Sbjct: 137 EAGIEVIKFEEK 148


>gi|332376376|gb|AEE63328.1| unknown [Dendroctonus ponderosae]
          Length = 222

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 54/146 (36%), Gaps = 35/146 (23%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG------------GCP-- 53
            FM+ A   ++      S    V   IV  D +++G G                 G    
Sbjct: 23  YFMATAFLAAKRSKDPCS---QVGACIVNEDNVIVGIGYNGMPKNCSDDEFPWSKGSKSD 79

Query: 54  ---------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                    HAE+ A L +   + R  T YV L PC+       CA+ II+ G+++++  
Sbjct: 80  LDNKYLYVCHAELNAILNKNSVDVRNCTMYVGLFPCNE------CAKVIIQSGVKQIIYM 133

Query: 104 VDDPDVRVSG-RGLQWLSQKGIIVDR 128
            D   ++ S     + L   GI   +
Sbjct: 134 SDKHGMKQSTIASKRMLDAAGIKYKQ 159


>gi|312623042|ref|YP_004024655.1| cmp/dcmp deaminase zinc-binding protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203509|gb|ADQ46836.1| CMP/dCMP deaminase zinc-binding protein [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 148

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 43/132 (32%), Gaps = 40/132 (30%)

Query: 31  VACLIVKDGIVIGRGV---------------------------TAYGGCPHAEVQALEEA 63
           V  LIVKD  ++  G                                   HAE  A+ +A
Sbjct: 27  VGALIVKDKRILATGYNGAPTGIPHCDEVGCLREKLNVPSGQRHELCRGLHAEQNAIIQA 86

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G    G+  Y T  PC        CA+ I+  GI++V+     PD        Q   
Sbjct: 87  AKMGVVIDGSVIYTTTYPCVI------CAKMIVNAGIKKVIYKGSYPDEMSQ----QIFK 136

Query: 121 QKGIIVDRMMES 132
           + GI V +  E 
Sbjct: 137 EAGIEVIKFEEK 148


>gi|312876091|ref|ZP_07736079.1| CMP/dCMP deaminase zinc-binding [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311797077|gb|EFR13418.1| CMP/dCMP deaminase zinc-binding [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 154

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 43/131 (32%), Gaps = 40/131 (30%)

Query: 31  VACLIVKDGIVIGRGV---------------------------TAYGGCPHAEVQALEEA 63
           V  LIVKD  ++  G                                   HAE  A+ +A
Sbjct: 27  VGALIVKDKRILATGYNGAPTGLPHCEEVGCLREKLNVPSGQRHELCRGLHAEQNAIIQA 86

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G    G+  Y T  PC        CA+ I+  GI++V+     PD        Q   
Sbjct: 87  AKMGVVIDGSVIYTTTYPCVI------CAKMIVNAGIKKVIYKGSYPDEMSQ----QIFK 136

Query: 121 QKGIIVDRMME 131
           + GI V +  E
Sbjct: 137 EAGIEVVKFKE 147


>gi|302380955|ref|ZP_07269416.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Finegoldia magna ACS-171-V-Col3]
 gi|303235173|ref|ZP_07321793.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Finegoldia magna BVS033A4]
 gi|302311176|gb|EFK93196.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Finegoldia magna ACS-171-V-Col3]
 gi|302493765|gb|EFL53551.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Finegoldia magna BVS033A4]
          Length = 139

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 54/148 (36%), Gaps = 35/148 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV---------------TA 48
           S++  FM  AL  +      T     V C++V  D  ++  G                T 
Sbjct: 4   SWNEYFMDLALNVATRS---TCDRAFVGCVLVNSDNRIVSTGYNGAISGNPHCDEVGHTL 60

Query: 49  YGG----CPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
             G      HAE+ AL    + G   +G   YVT  PC +      C + +I+ GI ++ 
Sbjct: 61  RDGHCIATIHAEMNALLYCAKEGIAVKGCICYVTHFPCLN------CTKSLIQAGISKIY 114

Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
                   RV    ++ L +  I   ++
Sbjct: 115 Y---HEAYRVDEYAIELLDRNNIEYVQI 139


>gi|15675651|ref|NP_269825.1| putative DNA-binding late competence protein [Streptococcus
           pyogenes M1 GAS]
 gi|19746757|ref|NP_607893.1| late competence protein [Streptococcus pyogenes MGAS8232]
 gi|21911111|ref|NP_665379.1| putative late competence protein required for DNA binding
           [Streptococcus pyogenes MGAS315]
 gi|28895204|ref|NP_801554.1| late competence protein required for DNA binding [Streptococcus
           pyogenes SSI-1]
 gi|71911361|ref|YP_282911.1| comE operon protein 2 [Streptococcus pyogenes MGAS5005]
 gi|139473178|ref|YP_001127893.1| cytidine and deoxycytidylate deaminase [Streptococcus pyogenes str.
           Manfredo]
 gi|209559918|ref|YP_002286390.1| Putative late competence protein required for DNA binding
           [Streptococcus pyogenes NZ131]
 gi|13622863|gb|AAK34546.1| putative late competence protein required for DNA binding
           [Streptococcus pyogenes M1 GAS]
 gi|19748988|gb|AAL98392.1| putative late competence protein [Streptococcus pyogenes MGAS8232]
 gi|21905321|gb|AAM80182.1| putative late competence protein required for DNA binding
           [Streptococcus pyogenes MGAS315]
 gi|28810450|dbj|BAC63387.1| putative late competence protein required for DNA binding
           [Streptococcus pyogenes SSI-1]
 gi|71854143|gb|AAZ52166.1| comE operon protein 2 [Streptococcus pyogenes MGAS5005]
 gi|134271424|emb|CAM29644.1| putative cytidine and deoxycytidylate deaminase [Streptococcus
           pyogenes str. Manfredo]
 gi|209541119|gb|ACI61695.1| Putative late competence protein required for DNA binding
           [Streptococcus pyogenes NZ131]
          Length = 153

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 51/148 (34%), Gaps = 36/148 (24%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY---------GG-------- 51
            FM+ A   S+     T     V  ++VKD  +I  G              G        
Sbjct: 10  YFMANAELISKRS---TCDRAFVGAVLVKDNRIIATGYNGGVSATDNCNEAGHYMEDGHC 66

Query: 52  --CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV-CVD 105
               HAE+ AL +    G    G   YVT  PC +      C + +++ GI ++      
Sbjct: 67  IRTVHAEMNALIQCAKEGISTDGTEIYVTHFPCIN------CTKALLQAGITKITYKAHY 120

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESE 133
            P        ++ + +KG+   +    +
Sbjct: 121 RPHPFA----IELMEKKGVAYVQHDVPQ 144


>gi|269216184|ref|ZP_06160038.1| cytidine/deoxycytidylate deaminase family protein [Slackia exigua
           ATCC 700122]
 gi|269130443|gb|EEZ61521.1| cytidine/deoxycytidylate deaminase family protein [Slackia exigua
           ATCC 700122]
          Length = 139

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 51/152 (33%), Gaps = 43/152 (28%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------------ 46
           M  A   S     L     +V  L+VKD  ++  G                         
Sbjct: 1   MHLAFEVSGRATCLRR---AVGALLVKDRRILATGYNGVPTGLRHCEEVGCLRERLGVPS 57

Query: 47  ---TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                     HAE  A+ +A   G   +G++ Y+T +PCS       C + II  GI  +
Sbjct: 58  GQRHEICRGLHAEQNAIIQAARHGINIQGSSIYITTQPCSV------CTKMIINAGIGEI 111

Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
           V     PD       L  L+   I+V ++   
Sbjct: 112 VYAEGYPD----RLSLDLLADTDIVVRKVERD 139


>gi|323498975|ref|ZP_08103958.1| deaminase-reductase domain-containing protein [Vibrio sinaloensis
           DSM 21326]
 gi|323316087|gb|EGA69115.1| deaminase-reductase domain-containing protein [Vibrio sinaloensis
           DSM 21326]
          Length = 177

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           D+ +L+  L  RG   L ++GG  V  SF    L+D +I+    +++G G 
Sbjct: 95  DIPQLVASLHQRGYQELYIDGGKTV-QSFAKHDLIDELIITTIPVLLGGGA 144


>gi|15673942|ref|NP_268117.1| hypothetical protein L18647 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12725002|gb|AAK06058.1|AE006426_4 hypothetical protein L18647 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326407497|gb|ADZ64568.1| conserved hypothetical protein [Lactococcus lactis subsp. lactis
           CV56]
          Length = 173

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 3/92 (3%)

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           NI++ D   L +L           + V GG  V   FI +  VD + +  + +++G+G  
Sbjct: 84  NIVFIDKEKLTELSVNFADTDKN-IWVVGGGEVIKLFIENHWVDELQVTIAPVLLGDG-- 140

Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
            S    G  ++    +    +G  V L Y+ K
Sbjct: 141 ISLFPSGNYKEKLQLIDTKIYGQFVELHYLVK 172


>gi|312222461|emb|CBY02401.1| similar to deoxycytidylate deaminase [Leptosphaeria maculans]
          Length = 357

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 52/149 (34%), Gaps = 41/149 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-- 53
           S+D  FM  A   +     +      V C IV++  VI  G             GGCP  
Sbjct: 196 SWDQYFMQLADLAAHRSNCMKR---RVGCCIVREKRVISTGYNGTPRGMPNSIQGGCPRC 252

Query: 54  ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                           HAE  AL EAG +  A  A  Y    PC        C+  I++ 
Sbjct: 253 NTATPGPHTLSTCLCLHAEENALLEAGRDRIAANAILYCNTCPCL------TCSVKIVQV 306

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           GI  VV         V  +  Q L+Q G+
Sbjct: 307 GIGEVVY---HHGYSVDEQTAQVLAQGGV 332


>gi|269986813|gb|EEZ93091.1| CMP/dCMP deaminase zinc-binding protein [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 159

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 59/174 (33%), Gaps = 50/174 (28%)

Query: 1   MPVSSFDARFMSAALRFSRWH---VGLTSTNPSVACLIVKDGIVIGRGV----------- 46
           M   S+D  F     + +       G        AC+IVK+  ++  G            
Sbjct: 1   MARLSWDEYFTEITKKVAERSTCDRGHA------ACVIVKENRILATGYAGSPKGMPHCD 54

Query: 47  ------------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
                             T      HAE  A+ +A   G    G+TAYVT+EPC      
Sbjct: 55  DVGHMLRKQYDNETGEITTHCIRTVHAEQNAITQAAKFGVSLDGSTAYVTMEPCFV---- 110

Query: 86  PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
             CA+ +++ G++RVV              L+  S+  I ++   + E      
Sbjct: 111 --CAKMLVQVGVKRVVA---FKKYHDDKDTLELFSKSNIPIEVKEDKEEDYANK 159


>gi|223997732|ref|XP_002288539.1| hypothetical protein THAPSDRAFT_268551 [Thalassiosira pseudonana
           CCMP1335]
 gi|220975647|gb|EED93975.1| hypothetical protein THAPSDRAFT_268551 [Thalassiosira pseudonana
           CCMP1335]
          Length = 180

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 53/176 (30%), Gaps = 41/176 (23%)

Query: 6   FDARFMSAALRFSRWHV--GLTSTNPSVACLI---VKDGIVIGRGVTA----YGGCPHAE 56
            +  FM  AL  +R  +  G       V C++       +++  G            HAE
Sbjct: 1   MEKYFMRQALCVARTALDIGEV----PVGCIVPYMASHSVIVSHGANQVNATRDATRHAE 56

Query: 57  VQALEEAGEEAR-------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           + A++    + R                 YVT EPC        CA  +   GI RV   
Sbjct: 57  IVAIDRMLTKGRSSDQLKLPPEIFANCDLYVTCEPCIM------CAAALSVMGIGRVFFG 110

Query: 104 VDDPDVRVSGRGLQWL--------SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRS 150
             +      G  L              G  +   ++E E    L ++  R+     
Sbjct: 111 CRNDRFGGCGSILHLHKEDTLQSSKHHGFTIHGGLLEEEAVALLRSFYDRENFHAP 166


>gi|226287511|gb|EEH43024.1| deoxycytidylate deaminase [Paracoccidioides brasiliensis Pb18]
          Length = 347

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 44/148 (29%), Gaps = 48/148 (32%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP--- 53
           +D  FM  A   +            V C+IV++  VI  G             GGCP   
Sbjct: 185 WDQYFMQLA-SLAAQRSNCMKR--RVGCVIVREKRVISTGYNGTPRNTKNCNEGGCPRCN 241

Query: 54  ---------------HAEVQALEEAGEEARG--ATAYVTLEPCSHYGRSPPCAQFIIECG 96
                          HAE  AL EAG E  G  A  Y                  I + G
Sbjct: 242 CGEGGGAALSTCLCIHAEENALLEAGRERIGEAAILYCN-------------TVKIAQLG 288

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           I  VV        + +      L + G+
Sbjct: 289 ISEVVYSQSYNMDKETAS---ILEEAGV 313


>gi|225678025|gb|EEH16309.1| dCMP deaminase [Paracoccidioides brasiliensis Pb03]
          Length = 347

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 44/148 (29%), Gaps = 48/148 (32%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP--- 53
           +D  FM  A   +            V C+IV++  VI  G             GGCP   
Sbjct: 185 WDQYFMQLA-SLAAQRSNCMKR--RVGCVIVREKRVISTGYNGTPRNTKNCNEGGCPRCN 241

Query: 54  ---------------HAEVQALEEAGEEARG--ATAYVTLEPCSHYGRSPPCAQFIIECG 96
                          HAE  AL EAG E  G  A  Y                  I + G
Sbjct: 242 CGEGGGAALSTCLCIHAEENALLEAGRERIGEAAILYCN-------------TVKIAQLG 288

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           I  VV        + +      L + G+
Sbjct: 289 ISEVVYSQSYNMDKETAS---ILEEAGV 313


>gi|226330044|ref|ZP_03805562.1| hypothetical protein PROPEN_03957 [Proteus penneri ATCC 35198]
 gi|225200839|gb|EEG83193.1| hypothetical protein PROPEN_03957 [Proteus penneri ATCC 35198]
          Length = 324

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 23/107 (21%)

Query: 7   DARFMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
           D +F+  A+  +       G          +IV +G VI   V           HAE+ A
Sbjct: 208 DNQFIQQAISLAMDNVKVGGR-----PFGAVIVNNGQVIASAVNQIVTTNDPTAHAELLA 262

Query: 60  LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           L EAG+     +      Y + +PC      P C   +   GI ++ 
Sbjct: 263 LREAGKVLGRTKLDDCIVYASGQPC------PMCLAAMRMAGISKIF 303


>gi|212709875|ref|ZP_03318003.1| hypothetical protein PROVALCAL_00924 [Providencia alcalifaciens DSM
           30120]
 gi|212687686|gb|EEB47214.1| hypothetical protein PROVALCAL_00924 [Providencia alcalifaciens DSM
           30120]
          Length = 180

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 61/174 (35%), Gaps = 37/174 (21%)

Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVH---LLRAQSDAILVGIGTVLADDPELTC 209
            + IA S D  I         +    SK + H      A  D I++G GT          
Sbjct: 7   HVFIATSLDGFIARDNGDIHWLLQLDSKGEDHGYDEFMANIDVIIMGRGT---------- 56

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
               ++   P                        PVI++++    +       + I  +Y
Sbjct: 57  -YESIKHIQPW-------------------FYHRPVIVLSKT---LAQETIPDELIGKVY 93

Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
                 K+++  L   G     ++GG  V  SFI+  L++ +I+ R  I++G G
Sbjct: 94  FLDLSPKEIMNKLESEGHHRAYIDGG-KVIQSFISDGLINDLIITRIPILLGSG 146


>gi|159028962|emb|CAO87423.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 178

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 55/165 (33%), Gaps = 39/165 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCPH--------- 54
           ++D  F+  A + +      T     V  +IVKD  V+  G      G  H         
Sbjct: 10  TWDEYFLMIA-KLA--ATRSTCLAFPVGAVIVKDRQVLATGYNGSPSGTVHCTAQGFCYP 66

Query: 55  --------AEV--QALE----------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                    E+  +A+           + G   +GA+ YVTLEPC        C + II 
Sbjct: 67  GLGTCRESGEIPSRAIHAEANAIAQAAKHGISTQGASIYVTLEPCI------SCLKLIIS 120

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
            GI+ V    D      +     +L    I   ++  SE      
Sbjct: 121 SGIKEVFYEADFNSGTKAILRDSFLETGIIKYKKIYLSEEMASHA 165


>gi|308233564|ref|ZP_07664301.1| dCMP deaminase [Atopobium vaginae DSM 15829]
          Length = 157

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 54/155 (34%), Gaps = 42/155 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
           ++D  FM      +   +     +  V   I   +  ++  G     G P          
Sbjct: 10  TWDEFFMRV---AAAAAMRSKDPHTQVGACIADSNDRILSVGY---NGTPTGINDDEFPW 63

Query: 54  ---------------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                          HAE  AL     + ++ +GATAYVTL PC        CA+ +++ 
Sbjct: 64  ESSADPLRDKHNFVIHAEANALLNYRGSLKDMQGATAYVTLFPCQE------CAKMLVQA 117

Query: 96  GIRRVVVCVD-DPDVRVSGRGLQWLSQKGIIVDRM 129
           GI  V+   D   D   +      L + GI   ++
Sbjct: 118 GIGEVIYAEDTYKDTEGAEISRSILDRCGITYRQI 152


>gi|307941692|ref|ZP_07657047.1| CMP/dCMP deaminase zinc-binding [Roseibium sp. TrichSKD4]
 gi|307775300|gb|EFO34506.1| CMP/dCMP deaminase zinc-binding [Roseibium sp. TrichSKD4]
          Length = 262

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 41/133 (30%), Gaps = 20/133 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEARG-----ATAYVTLEPCS 80
            V  ++V+DG V+ +             HAEV  +  A              YVTLEPC 
Sbjct: 135 PVGAVLVRDGKVLAKDGNRTLELNDPTAHAEVLVIRAACNTLASQRLPECDLYVTLEPC- 193

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR-----GLQWLSQKGIIVDRMMESEGK 135
                P CA  I    IRR+     D                       +     E    
Sbjct: 194 -----PMCAGAISFARIRRLYYGAGDTKGGAVENGTRFFCQPTCHHAPEVYSGFQEQASA 248

Query: 136 IFLHAYLTRQVEK 148
             L ++  ++ ++
Sbjct: 249 ELLKSFFQKKRQR 261


>gi|226308791|ref|YP_002768751.1| cytosine deaminase [Rhodococcus erythropolis PR4]
 gi|229489217|ref|ZP_04383083.1| cytosine deaminase [Rhodococcus erythropolis SK121]
 gi|226187908|dbj|BAH36012.1| putative cytosine deaminase [Rhodococcus erythropolis PR4]
 gi|229324721|gb|EEN90476.1| cytosine deaminase [Rhodococcus erythropolis SK121]
          Length = 154

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 48/143 (33%), Gaps = 20/143 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEE 62
           D  F+  A+  ++  +G       +   ++  G V+  G            H E   +E 
Sbjct: 8   DEYFLGLAIEQAK--IGWEEGGVPIGAALIHRGEVLAVGRNRRVQMNSAIRHGETDCIER 65

Query: 63  AGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           AG       R    Y TL PC     +           I R+VV  +    R      +W
Sbjct: 66  AGRLPASVYRECVLYTTLSPCFMCAGTARL------YEIPRIVVGEN----RSFEASEEW 115

Query: 119 LSQKGIIVDRMMESEGKIFLHAY 141
           L   GI VD + ++E    +   
Sbjct: 116 LRSSGIQVDVVDDAECVALMDRM 138


>gi|221480648|gb|EEE19095.1| deoxycytidylate deaminase, putative [Toxoplasma gondii GT1]
 gi|221501404|gb|EEE27182.1| deoxycytidylate deaminase, putative [Toxoplasma gondii VEG]
          Length = 180

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 47/147 (31%), Gaps = 44/147 (29%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPS---VACLIVKDGIVIGRGVTAYGGCP-------- 53
           S+D  FM          +  T +N     V  ++ +   VI  G                
Sbjct: 22  SWDTYFMRLTF------LASTRSNCMKRRVGAIVARGNRVIATGYNGTPSQAANCNAGGC 75

Query: 54  --------------------HAEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQFI 92
                               HAE  AL EAG + A   T YVT  PC        CA+ +
Sbjct: 76  ARCNDPSVSQGRALEACECIHAEANALLEAGRDRAMNGTLYVTCLPCLG------CAKLV 129

Query: 93  IECGIRRVVVCVDDPDVRVSGRGLQWL 119
           ++  IR VV   +  D   +   L  +
Sbjct: 130 VQSAIRTVVYAEEYDDKSGALDLLNRM 156


>gi|108797195|ref|YP_637392.1| bifunctional deaminase-reductase-like protein [Mycobacterium sp.
           MCS]
 gi|119866281|ref|YP_936233.1| deaminase-reductase domain-containing protein [Mycobacterium sp.
           KMS]
 gi|108767614|gb|ABG06336.1| bifunctional deaminase-reductase-like protein [Mycobacterium sp.
           MCS]
 gi|119692370|gb|ABL89443.1| bifunctional deaminase-reductase domain protein [Mycobacterium sp.
           KMS]
          Length = 177

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 13/113 (11%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLK-KLLTILVGRGVTSLLVEGGAAVAHSF 302
           P  +VT   D V A       +     D  +L  +L+    G+    + V GG  +A  F
Sbjct: 71  PTWVVTHRPDIVAA----GHPVQTFAGDVTELHPELVAAAGGKD---VWVVGGGELAAQF 123

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           + + LVD +I+  +   +G G   SP+    +   +  V        VC  + 
Sbjct: 124 VAAGLVDEMIVSYAPCTLGAG---SPVLP--IRSEWELVESAVNREFVCARWR 171


>gi|290559824|gb|EFD93148.1| bifunctional deaminase-reductase domain protein [Candidatus
           Parvarchaeum acidophilus ARMAN-5]
          Length = 171

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 68/197 (34%), Gaps = 43/197 (21%)

Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS 218
           + + MI  +       +   ++     + A+ +  +VG  T          R NG     
Sbjct: 12  TANGMIARSDGS--EFSSKKARQGFQNMMAKVNVNIVGRNTFEM------SRKNGSFPMK 63

Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
            + +++  H         IK +    VII   N                        KK+
Sbjct: 64  GLNVVVTSHK--------IKNSFGKDVIITNSN-----------------------PKKI 92

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
           + I+  RG    +V GG   A +F+   LV+ I L    I+ G  GIP    E + EK  
Sbjct: 93  IEIVEKRGYKEAMV-GGGVTAANFLKEGLVNEIFLDIEPIIFG-KGIPVFAYEKF-EKKL 149

Query: 339 MCVRRDYFGSD-VCLEY 354
             +      ++ + L Y
Sbjct: 150 KLIDTKRISNNEIRLHY 166


>gi|290558813|gb|EFD92206.1| bifunctional deaminase-reductase domain protein [Candidatus
           Parvarchaeum acidophilus ARMAN-5]
          Length = 171

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 68/197 (34%), Gaps = 43/197 (21%)

Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS 218
           + + MI  +       +   ++     + A+ +  +VG  T          R NG     
Sbjct: 12  TANGMIARSDGS--EFSSKKARQGFQNMMAKVNVNIVGRNTFEM------SRKNGSFPMK 63

Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
            + +++  H         IK +    VII   N                        KK+
Sbjct: 64  GLNVVVTSHK--------IKNSFGKDVIITNSN-----------------------PKKI 92

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
           + I+  RG    +V GG   A +F+   LV+ I L    I+ G  GIP    E + EK  
Sbjct: 93  IEIVEKRGYKEAMV-GGGVTAANFLKEGLVNEIFLDIEPIIFG-KGIPVFAYEKF-EKKL 149

Query: 339 MCVRRDYFGSD-VCLEY 354
             +      ++ + L Y
Sbjct: 150 KLIDTKRISNNEIRLHY 166


>gi|119963022|ref|YP_946468.1| riboflavin biosynthesis protein RibD [Arthrobacter aurescens TC1]
 gi|119949881|gb|ABM08792.1| riboflavin biosynthesis protein RibD [Arthrobacter aurescens TC1]
          Length = 201

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 74/221 (33%), Gaps = 28/221 (12%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
              +   +AVS D  I   G                  R  SDAI     TV+AD   + 
Sbjct: 1   MRELVYYVAVSLDGYIAGPGGEFDAFPVEGDHMAAQNER-FSDAI----PTVIAD--AMG 53

Query: 209 CRLNG------LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
            +  G      +   +   + L            +K  + +     TE+D P      + 
Sbjct: 54  IKRTGTMFDTVVMGWNTYAVGLPVGMTSPYQH--LKQVVFSRTR--TESDVPGEHPNLKV 109

Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
            +         D  +++  L      S+ + GG  +A     +  +D ++L RS ++ G+
Sbjct: 110 TD--------EDPVEVVRRLKSEPGQSIWLCGGGQLATQL--AGEIDRLVLKRSPVLFGD 159

Query: 323 GGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQE 363
            GIP      Y    F  V    FGS V +    +    Q+
Sbjct: 160 -GIPLFAPGTYQPSAFNEVSTTAFGSGVVISEYARRQLSQD 199


>gi|157135264|ref|XP_001656575.1| tRNA-specific adenosine-34 deaminase subunit Tad2p/ADAT2, putative
           [Aedes aegypti]
 gi|108870242|gb|EAT34467.1| tRNA-specific adenosine-34 deaminase subunit Tad2p/ADAT2, putative
           [Aedes aegypti]
          Length = 171

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 42/154 (27%), Gaps = 15/154 (9%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
            FM  AL  +R    L      V C+ V  G +I  G            H E   +++  
Sbjct: 13  HFMEQALEQARKAEQL--KEVPVGCVFVYRGEIIANGCNLVNETKNATRHVEFICIDQVL 70

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-- 117
           E       +    +  +           CA  +IE  +R V+      D       L   
Sbjct: 71  EYCKNRSLKHEDVFREVTVVVTVEPCIMCAAALIELNVREVIYGC-KNDRFGGCTVLDVP 129

Query: 118 -WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
             L     I   +   E    L  +   +     
Sbjct: 130 GLLKTSIPIRGGVRADEAMELLKEFYKGENPSAP 163


>gi|194476730|ref|YP_002048909.1| cytidine/deoxycytidylate deaminase family protein [Paulinella
           chromatophora]
 gi|171191737|gb|ACB42699.1| cytidine/deoxycytidylate deaminase family protein [Paulinella
           chromatophora]
          Length = 157

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 51/135 (37%), Gaps = 22/135 (16%)

Query: 1   MPVSSFD--ARFMSAALR-FSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGC 52
           M   S D    +MS  LR  SR     T  +  +A +I+   G  +G G  +        
Sbjct: 1   MNELSLDTYRYWMSRLLRCVSRM---KTDCDVPIAAVILNGAGQCVGWGRNSREKNQDPM 57

Query: 53  PHAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
            HAE+ AL +A            T  VTLEPC      P CA  +++  ++ VV    D 
Sbjct: 58  GHAELIALRQAAVLRGSWRFDDCTLIVTLEPC------PMCAGALVQARMKFVVYGSYDY 111

Query: 108 DVRVSGRGLQWLSQK 122
                G  +   +  
Sbjct: 112 KRGALGGTVDLSNHA 126


>gi|242779025|ref|XP_002479358.1| DRAP deaminase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218722977|gb|EED22395.1| DRAP deaminase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 253

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 58/178 (32%), Gaps = 45/178 (25%)

Query: 1   MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIV----------KDGIVIGRGVTAY 49
           M  S S   +++   L+ +        TN  V  +++           D  ++  G T  
Sbjct: 1   MTSSESSHLKYLRECLKLASKSPPR-PTNFRVGAILILRPDTPDDTSSDDKILSTGYTME 59

Query: 50  -GGCPHAEVQ------------------ALEEAGEEA-RGATAYVTLEPCS-HYGRSPPC 88
             G  HAE                    A    GE   R    YVT+EPC      + PC
Sbjct: 60  LPGNTHAEQCCLSNYAATHGVYEEQVADAFPSQGERKGRKILLYVTMEPCGIRLSGNTPC 119

Query: 89  AQFIIE-----------CGIRRVVVCVDDPDVRVSGRG-LQWLSQKGIIVDRMMESEG 134
              II+            GI +V   V +P   V      + L++ GI  + +   E 
Sbjct: 120 VHRIIQTRKRNDDSNNNNGIDKVYFGVKEPGTFVGESQGCKMLTEAGIEWEFVGGLEN 177


>gi|194336940|ref|YP_002018734.1| CMP/dCMP deaminase zinc-binding [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194309417|gb|ACF44117.1| CMP/dCMP deaminase zinc-binding [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 177

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 51/154 (33%), Gaps = 44/154 (28%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP------------- 53
             FMS A   SR     T  +  +  +IV++  ++  G      G P             
Sbjct: 30  EYFMSVAHLISRRA-TCTRGH--IGAVIVRENSILSTGYNGAPSGLPHCNESNCRIYRSI 86

Query: 54  --------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                         HAE+ A+ +A   G   + +  Y+T  PC H      C + +I  G
Sbjct: 87  HPDGTVEENCVNTIHAEINAIAQAAKHGVSIKDSDIYITASPCIH------CLKVLINVG 140

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           I+ +                + L   GI + ++ 
Sbjct: 141 IKTIYY----DKPYKIEHIAELLRLSGIRLVQVN 170


>gi|114564723|ref|YP_752237.1| CMP/dCMP deaminase, zinc-binding [Shewanella frigidimarina NCIMB
           400]
 gi|114336016|gb|ABI73398.1| CMP/dCMP deaminase, zinc-binding [Shewanella frigidimarina NCIMB
           400]
          Length = 144

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 50/152 (32%), Gaps = 35/152 (23%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----------- 51
           ++ +  RF+  A   + W       +  V  +I ++  ++  G   Y             
Sbjct: 2   MTKWATRFLQMAELVASWSK---DPSTRVGAVITENNRIVSLGFNGYPHGISDSAETDNR 58

Query: 52  ------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                   HAE  A+  A  +      +VT  PC      P CA  II+ G+R V     
Sbjct: 59  EMKLLKTLHAEENAILHAKRDLSSCEIWVTHFPC------PNCAAKIIQTGLRAVH--SP 110

Query: 106 DPDVRVSGRGL-------QWLSQKGIIVDRMM 130
            P+     R             Q G+ VD M 
Sbjct: 111 KPNEDFLSRWGDKIKVSQDMFEQAGVQVDWMQ 142


>gi|329113789|ref|ZP_08242560.1| Putative deaminase [Acetobacter pomorum DM001]
 gi|326696799|gb|EGE48469.1| Putative deaminase [Acetobacter pomorum DM001]
          Length = 151

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 55/153 (35%), Gaps = 23/153 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEA-- 63
           M  AL  +  H+   +    V  +++   G V+ +        +    HAE+  + EA  
Sbjct: 7   MELALWQA--HLAAANGEVPVGAVLLDSAGNVLAQAGNRVEELHDPSAHAEMLVMREAVQ 64

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G++    T +V+LEPC      P CA  +    + RVV    DP       G +   
Sbjct: 65  QRQGQKLADCTLFVSLEPC------PMCAAAMAHFRLGRVVFGAYDPKGGGVEHGARLPH 118

Query: 121 QKGI-----IVDRMMESEGKIFLHAYLTRQVEK 148
           +        ++  + E E    L  +      +
Sbjct: 119 RPETLHRMEVIGGVREQESAEMLKTFFQTLRCR 151


>gi|94991124|ref|YP_599224.1| ComE operon protein 2 [Streptococcus pyogenes MGAS10270]
 gi|94544632|gb|ABF34680.1| ComE operon protein 2 [Streptococcus pyogenes MGAS10270]
          Length = 170

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 44/136 (32%), Gaps = 31/136 (22%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY---------GG-------- 51
            FM+ A   S+     T     V  ++VKD  +I  G              G        
Sbjct: 25  YFMANAELISKRS---TCDRAFVGAVLVKDNRIIATGYNGGVSATDNCNEAGHYMEDGHC 81

Query: 52  --CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               HAE+ AL +    G    G   YVT  PC +      C + +++ GI ++      
Sbjct: 82  IRTVHAEMNALIQCAKEGISTDGTEIYVTHFPCIN------CTKALLQAGITKITYKAHY 135

Query: 107 PDVRVSGRGLQWLSQK 122
                +   ++     
Sbjct: 136 RPHPFAIELMEKKEVA 151


>gi|294660212|ref|NP_852829.2| bifunctional dihydrofolate reductase/deoxycytidylate deaminase
           [Mycoplasma gallisepticum str. R(low)]
 gi|5565934|gb|AAD45277.1|AF152114_5 dihydrofolate reductase/deoxycytidylate deaminase fusion protein
           [Mycoplasma gallisepticum]
 gi|284811862|gb|AAP56397.2| Bifunctional protein including dihydrofolate reductase and
           deoxycytidylate deaminase family domains [Mycoplasma
           gallisepticum str. R(low)]
 gi|284930290|gb|ADC30229.1| Bifunctional protein including dihydrofolate reductase and
           deoxycytidylate deaminase family domains [Mycoplasma
           gallisepticum str. R(high)]
 gi|284931057|gb|ADC30995.1| Bifunctional protein including dihydrofolate reductase and
           deoxycytidylate deaminase family domains [Mycoplasma
           gallisepticum str. F]
          Length = 317

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 43/127 (33%), Gaps = 32/127 (25%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
           S+D  FM  A   +   +     +  V   IV K   VIG G                  
Sbjct: 167 SWDEYFMMLA---NVSAMRSKDPSTQVGACIVNKKKYVIGLGYNGMPKGLDNIFPWDRTN 223

Query: 47  -----TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                T Y    HAE+ A+          T Y  L PCS+  ++      I++ GI  VV
Sbjct: 224 QDSAKTKYPYVVHAEINAILNTSTVIEDCTLYTNLFPCSNCAKT------IVQSGIVEVV 277

Query: 102 VCVDDPD 108
              +  +
Sbjct: 278 YEDNKYE 284


>gi|312128227|ref|YP_003993101.1| cmp/dcmp deaminase zinc-binding protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778246|gb|ADQ07732.1| CMP/dCMP deaminase zinc-binding protein [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 154

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 43/131 (32%), Gaps = 40/131 (30%)

Query: 31  VACLIVKDGIVIGRGV---------------------------TAYGGCPHAEVQALEEA 63
           V  LIVKD  ++  G                                   HAE  A+ +A
Sbjct: 27  VGALIVKDKRILATGYNGAPTGLPHCEEVGCLREKLNVPSGQRHELCRGLHAEQNAIIQA 86

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G    G+  Y T  PC        CA+ I+  GI++V+     PD        Q   
Sbjct: 87  AKMGVVIDGSVIYTTTYPCVI------CAKMIVNAGIKKVIYKGSYPDEMSQ----QIFK 136

Query: 121 QKGIIVDRMME 131
           + GI V +  E
Sbjct: 137 EAGIEVVKFEE 147


>gi|119386956|ref|YP_918011.1| CMP/dCMP deaminase, zinc-binding [Paracoccus denitrificans PD1222]
 gi|119377551|gb|ABL72315.1| CMP/dCMP deaminase, zinc-binding protein [Paracoccus denitrificans
           PD1222]
          Length = 157

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 17/115 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
           +S     ++  A+  +  +V      P    ++V+DG V+  GV           HAE+ 
Sbjct: 1   MSDQAKHYLEQAVMLAHRNV-QAGGRP-FGAVVVRDGEVLATGVNETVATHDPTAHAELV 58

Query: 59  ALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           AL  A       +      + + +PC      P C   +   G+ +V     + D
Sbjct: 59  ALRAAALRLGSPDLSACVVHASGQPC------PMCLAAMRLAGVTKVHYAYSNQD 107


>gi|302837985|ref|XP_002950551.1| hypothetical protein VOLCADRAFT_81171 [Volvox carteri f.
           nagariensis]
 gi|300264100|gb|EFJ48297.1| hypothetical protein VOLCADRAFT_81171 [Volvox carteri f.
           nagariensis]
          Length = 280

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 46/145 (31%), Gaps = 40/145 (27%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------------- 46
           M+ A   +         N  V  +IV  D I++  G                        
Sbjct: 1   MALAFLSAERSK---DPNKQVGAVIVNVDNIILAIGYNGFPRGCCDSDLPWAKEALSSDG 57

Query: 47  ------TAYGGCPHAEVQALEEAGEEA-RGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE  AL      +  GA  YVT+ PC+       CA+ +I+ G+R 
Sbjct: 58  NPDPLATKYPYVVHAEANALLNKNAASVAGARVYVTMFPCNE------CAKLLIQAGVRE 111

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGI 124
           VV   D       G         G+
Sbjct: 112 VVYHEDKVLHLEGGSRRNGSEADGV 136


>gi|254822445|ref|ZP_05227446.1| hypothetical protein MintA_21101 [Mycobacterium intracellulare ATCC
           13950]
          Length = 152

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 57/155 (36%), Gaps = 25/155 (16%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----CPHAEVQALE 61
           D + + +AL  +            +  +++  DG  + R V A         HAE+ AL 
Sbjct: 4   DEQLIRSALSVAATAGPRDVP---IGAVVISADGTELARAVNAREALGDPTAHAEILALR 60

Query: 62  EA------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            A      G    GAT  VT+EPC        CA  ++   I R+V    +P     G  
Sbjct: 61  AAAEVLGDGWRLEGATLAVTVEPC------TMCAGALVLSRIGRLVFGAWEPKTGAVGSL 114

Query: 116 LQ-----WLSQKGIIVDRMMESEGKIFLHAYLTRQ 145
                   L+ +  +   ++  E    L A+  RQ
Sbjct: 115 WDVVRDRRLNHRPEVRGGVLAQECAAPLEAFFARQ 149


>gi|50914883|ref|YP_060855.1| ComE operon protein 2 [Streptococcus pyogenes MGAS10394]
 gi|94989182|ref|YP_597283.1| comE operon protein 2 [Streptococcus pyogenes MGAS9429]
 gi|94993070|ref|YP_601169.1| ComE operon protein 2 [Streptococcus pyogenes MGAS2096]
 gi|94995003|ref|YP_603101.1| ComE operon protein 2 [Streptococcus pyogenes MGAS10750]
 gi|50903957|gb|AAT87672.1| ComE operon protein 2 [Streptococcus pyogenes MGAS10394]
 gi|94542690|gb|ABF32739.1| comE operon protein 2 [Streptococcus pyogenes MGAS9429]
 gi|94546578|gb|ABF36625.1| ComE operon protein 2 [Streptococcus pyogenes MGAS2096]
 gi|94548511|gb|ABF38557.1| ComE operon protein 2 [Streptococcus pyogenes MGAS10750]
          Length = 168

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 51/148 (34%), Gaps = 36/148 (24%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY---------GG-------- 51
            FM+ A   S+     T     V  ++VKD  +I  G              G        
Sbjct: 25  YFMANAELISKRS---TCDRAFVGAVLVKDNRIIATGYNGGVSATDNCNEAGHYMEDGHC 81

Query: 52  --CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV-CVD 105
               HAE+ AL +    G    G   YVT  PC +      C + +++ GI ++      
Sbjct: 82  IRTVHAEMNALIQCAKEGISTDGTEIYVTHFPCIN------CTKALLQAGITKITYKAHY 135

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESE 133
            P        ++ + +KG+   +    +
Sbjct: 136 RPHPFA----IELMEKKGVAYVQHDVPQ 159


>gi|313683576|ref|YP_004061314.1| cmp/dcmp deaminase zinc-binding protein [Sulfuricurvum kujiense DSM
           16994]
 gi|313156436|gb|ADR35114.1| CMP/dCMP deaminase zinc-binding protein [Sulfuricurvum kujiense DSM
           16994]
          Length = 152

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 34/109 (31%), Gaps = 16/109 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           +M+ A   +   +      P     IV++G +I               HAE+  + +A E
Sbjct: 4   WMAIARDEALKGMDSNEGGP-FGAAIVRNGSLIAAAHNEVLKSNDPTAHAEINVIRKASE 62

Query: 66  EAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           +           Y T  PC      P C   I+   I  V       D 
Sbjct: 63  KLATYDLSDCVLYTTCYPC------PMCLGAILWARIPTVYYASTMDDA 105


>gi|256847006|ref|ZP_05552452.1| ComE operon protein 2 [Lactobacillus coleohominis 101-4-CHN]
 gi|256715670|gb|EEU30645.1| ComE operon protein 2 [Lactobacillus coleohominis 101-4-CHN]
          Length = 162

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 31/136 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            +D  FM  A   +           SV  ++V+D  +IG G                   
Sbjct: 6   DWDQYFMVQAGLVASRGTCRRL---SVGAILVRDKRIIGSGYNGAVAGDDHCIDVGCYMR 62

Query: 54  --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE+ AL +    G    GA  YVT  PC        C + +++ GI+++  
Sbjct: 63  DGHCVRTIHAEMNALLQCAKFGTPTDGAVLYVTDFPCLQ------CTKSLLQAGIKQINY 116

Query: 103 CVDDPDVRVSGRGLQW 118
             +  +   + + ++ 
Sbjct: 117 LRNYHNDEYAMKLIRL 132


>gi|195953373|ref|YP_002121663.1| CMP/dCMP deaminase zinc-binding [Hydrogenobaculum sp. Y04AAS1]
 gi|195932985|gb|ACG57685.1| CMP/dCMP deaminase zinc-binding [Hydrogenobaculum sp. Y04AAS1]
          Length = 147

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 11/78 (14%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCSHYGR 84
            V+ L+ K+  ++           HAE+ A+E+A      +   G   YV+LEPC     
Sbjct: 24  PVSALVTKNDEIVSWAFNGIKSIEHAEILAIEKAMNVLNTKRLDGCDIYVSLEPC----- 78

Query: 85  SPPCAQFIIECGIRRVVV 102
            P C   I    I +V  
Sbjct: 79  -PMCTYAISLARIEKVYF 95


>gi|227894427|ref|ZP_04012232.1| competence protein ComEB [Lactobacillus ultunensis DSM 16047]
 gi|227863797|gb|EEJ71218.1| competence protein ComEB [Lactobacillus ultunensis DSM 16047]
          Length = 159

 Score = 53.7 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 55/144 (38%), Gaps = 34/144 (23%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------------- 53
             FM  AL  ++      +    V  ++VKD  +IG G      G P             
Sbjct: 9   QYFMIQALVIAQRSTCNRA---LVGSVLVKDHRIIGTGYNGSVSGQPHCDDVGHQMVDGH 65

Query: 54  -----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                H+E+ A+ +    G        YVT  PC +      C + +++ G++++    D
Sbjct: 66  CVRTIHSEMNAIIQCAKFGVSTENTEIYVTHFPCYN------CCKSLLQAGVKKINYYFD 119

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRM 129
             D  ++   ++ L   G+  +++
Sbjct: 120 YRDNPLA---MKLLHDCGVPYEQI 140


>gi|153941176|ref|YP_001390638.1| guanine deaminase [Clostridium botulinum F str. Langeland]
 gi|152937072|gb|ABS42570.1| guanine deaminase [Clostridium botulinum F str. Langeland]
 gi|295318715|gb|ADF99092.1| guanine deaminase [Clostridium botulinum F str. 230613]
          Length = 157

 Score = 53.7 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 31/90 (34%), Gaps = 15/90 (16%)

Query: 30  SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
                IVKDG +I        G      H EV  + +A +     +  G   Y T EPC 
Sbjct: 25  PFGSAIVKDGEMIAVAHNTVVGDNDPTAHGEVNVIRKACKKLNTFDLSGCELYTTSEPC- 83

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
                P C   II   I +V       D R
Sbjct: 84  -----PMCMSAIIWANISKVYYGCTVEDAR 108


>gi|91791447|ref|YP_561098.1| CMP/dCMP deaminase, zinc-binding [Shewanella denitrificans OS217]
 gi|91713449|gb|ABE53375.1| CMP/dCMP deaminase, zinc-binding [Shewanella denitrificans OS217]
          Length = 147

 Score = 53.7 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 39/125 (31%), Gaps = 28/125 (22%)

Query: 31  VACLIVKDGIVIGRGVTAYGG-----------------CPHAEVQALEEAGEEARGATAY 73
           V  +I K   ++  G   Y                     HAE  A+  A  +  G   +
Sbjct: 27  VGAVITKHNRIVSVGFNGYPHGISDSAETDDRDMKLLKTLHAEENAILFAKRDLDGCDIW 86

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS-----GRGLQWLSQKGIIVDR 128
           VT  PC      P CA  II+ GI  V     + D             +   Q G+ V  
Sbjct: 87  VTHFPC------PNCAAKIIQTGITGVFCPEQNADFLSRWGDKISISQEMFLQAGVKVTW 140

Query: 129 MMESE 133
           +   E
Sbjct: 141 LPLDE 145


>gi|15894774|ref|NP_348123.1| dihydrofolate reductase [Clostridium acetobutylicum ATCC 824]
 gi|15024442|gb|AAK79463.1|AE007660_6 Enzyme of dihydrofolate reductase family, ortholog YWFD B.subtilis
           [Clostridium acetobutylicum ATCC 824]
 gi|325508912|gb|ADZ20548.1| Enzyme of dihydrofolate reductase family [Clostridium
           acetobutylicum EA 2018]
          Length = 176

 Score = 53.7 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 5/102 (4%)

Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
            +   + +N+  I  D  +    +  L G  +    + GG  + +SFI  RLVD  I+  
Sbjct: 80  KSEKGKNENVEFINQDVVEFTNKIKRLDGGNI---WLVGGGVLLNSFIKERLVDEFIITI 136

Query: 316 SQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           S  +IG  GIP   ++   E          F   V L Y  K
Sbjct: 137 SPTLIGH-GIP-LFKKNDFELELKLKGIRRFNQFVELHYEVK 176


>gi|260774273|ref|ZP_05883188.1| putative deoxycytidylate deaminase [Vibrio metschnikovii CIP 69.14]
 gi|260611234|gb|EEX36438.1| putative deoxycytidylate deaminase [Vibrio metschnikovii CIP 69.14]
          Length = 157

 Score = 53.7 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 39/125 (31%), Gaps = 28/125 (22%)

Query: 31  VACLIVKDGIVIGRGVTAYGG-----------------CPHAEVQALEEAGEEARGATAY 73
           V  +I K   ++  G   Y                     HAE  A+  A  +  G   Y
Sbjct: 27  VGAVITKQNRIVSVGFNGYPHGISDSANTDDRDMKYLKTLHAEENAILFAKRDLDGCEIY 86

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS-----GRGLQWLSQKGIIVDR 128
           VT  PC      P CA  II+ GI  V       D                 Q G+ V+ 
Sbjct: 87  VTHFPC------PNCAAKIIQTGISAVHCPEQSDDFLSRWGDKIKVSQDMFLQAGVKVNW 140

Query: 129 MMESE 133
           +  +E
Sbjct: 141 LPLNE 145


>gi|254821940|ref|ZP_05226941.1| hypothetical protein MintA_18552 [Mycobacterium intracellulare ATCC
           13950]
          Length = 116

 Score = 53.7 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 30/76 (39%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P I+VT            +  + I   D  D+   + +L  +G+  +L EGG  +    +
Sbjct: 2   PPILVTCARTAARLDHDDRLRVLIAGEDTVDVALAVAMLREQGMHRILCEGGPTLLDELV 61

Query: 304 NSRLVDSIILYRSQIV 319
            +  V  + +  +  +
Sbjct: 62  EADAVTELCVTLAPRL 77


>gi|328943349|ref|ZP_08240814.1| competence protein comEB [Atopobium vaginae DSM 15829]
 gi|327491318|gb|EGF23092.1| competence protein comEB [Atopobium vaginae DSM 15829]
          Length = 165

 Score = 53.7 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 54/155 (34%), Gaps = 42/155 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
           ++D  FM      +   +     +  V   I   +  ++  G     G P          
Sbjct: 18  TWDEFFMRV---AAAAAMRSKDPHTQVGACIADSNDRILSVGY---NGTPTGINDDEFPW 71

Query: 54  ---------------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                          HAE  AL     + ++ +GATAYVTL PC        CA+ +++ 
Sbjct: 72  ESSADPLRDKHNFVIHAEANALLNYRGSLKDMQGATAYVTLFPCQE------CAKMLVQA 125

Query: 96  GIRRVVVCVD-DPDVRVSGRGLQWLSQKGIIVDRM 129
           GI  V+   D   D   +      L + GI   ++
Sbjct: 126 GIGEVIYAEDTYKDTEGAEISRSILDRCGITYRQI 160


>gi|83591989|ref|YP_425741.1| tRNA-adenosine deaminase [Rhodospirillum rubrum ATCC 11170]
 gi|83574903|gb|ABC21454.1| tRNA-adenosine deaminase [Rhodospirillum rubrum ATCC 11170]
          Length = 159

 Score = 53.7 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 16/104 (15%)

Query: 30  SVACLIVK-DGIVIG----RGVTAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
            V  +I    G  +     R  T +    HAE+ A+  A            T +VTLEPC
Sbjct: 34  PVGAVITDAGGRPLAACANRTETDHDPTAHAEILAIRAACARRGDARLPDCTLWVTLEPC 93

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
                 P CA  I+   + RV+    DP       G++  +  G
Sbjct: 94  ------PMCASAIVHARLARVIFGAYDPKGGAVDHGVRLFAHPG 131


>gi|118468323|ref|YP_890544.1| cytidine and deoxycytidylate deaminase family protein
           [Mycobacterium smegmatis str. MC2 155]
 gi|118169610|gb|ABK70506.1| cytidine and deoxycytidylate deaminase family protein
           [Mycobacterium smegmatis str. MC2 155]
          Length = 149

 Score = 53.7 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 55/150 (36%), Gaps = 25/150 (16%)

Query: 12  SAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVT--AYGGCP--HAEVQALEEA--- 63
            AAL  +R           +  ++   DG  + R V      G P  HAE+ A+  A   
Sbjct: 8   RAALEAARTAGPRDVP---IGAVVYAADGTELARAVNVREAYGDPAGHAEIVAMRAAAKV 64

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ--- 117
              G    GAT  VT+EPC        CA  ++   + R+V    +P     G       
Sbjct: 65  LGDGWRLEGATLAVTVEPC------TMCAGALVLARVSRLVFGAWEPKTGAVGSLWDVVR 118

Query: 118 --WLSQKGIIVDRMMESEGKIFLHAYLTRQ 145
              L+ +  ++  ++  E    L  +  RQ
Sbjct: 119 DRRLNHRPEVIGGVLADECAALLEEFFARQ 148


>gi|51473999|ref|YP_067756.1| cytosine aminohydrolase [Rickettsia typhi str. Wilmington]
 gi|81610850|sp|Q68Y02|Y819_RICTY RecName: Full=Uncharacterized deaminase RT0819
 gi|51460311|gb|AAU04274.1| Cytosine aminohydrolase [Rickettsia typhi str. Wilmington]
          Length = 148

 Score = 53.7 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 11  MSAALRFSRWHVGLTSTN-PSVACLIVK--DGIVIGRGVT----AYGGCPHAEVQALEEA 63
           M  AL+ +R        N   V  +IV   +  +I               HAE+ A+ EA
Sbjct: 1   MEQALKQARLAF---DKNEVPVGVVIVYRLNQKIIVSSHNNIEEKNNALCHAEIIAINEA 57

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                 +       YVTLEPC+       CA  I    ++R+     D         L++
Sbjct: 58  CNLISSKNLNDYDIYVTLEPCAM------CASAISHSRLKRLFYGASDSKQGAVESNLRY 111

Query: 119 LSQ 121
            + 
Sbjct: 112 FNS 114


>gi|89097158|ref|ZP_01170048.1| Enzyme; dihydrofolate reductase family protein [Bacillus sp. NRRL
           B-14911]
 gi|89087981|gb|EAR67092.1| Enzyme; dihydrofolate reductase family protein [Bacillus sp. NRRL
           B-14911]
          Length = 178

 Score = 53.7 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D+      L      ++ V GG  + H+F+   L+D + +  +  +IG+ GIP   + 
Sbjct: 94  NEDIVDFANSLKKEEGKNIWVVGGGELLHTFLKEELLDELFITIAPAIIGD-GIP-LFKS 151

Query: 332 GYLEKNFMCVRRDYFGSDVCLEYIGK 357
           G  E +        F   V + Y  K
Sbjct: 152 GNYELDLKLKGTRTFNQFVEIHYTVK 177


>gi|308497160|ref|XP_003110767.1| hypothetical protein CRE_04875 [Caenorhabditis remanei]
 gi|308242647|gb|EFO86599.1| hypothetical protein CRE_04875 [Caenorhabditis remanei]
          Length = 168

 Score = 53.7 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 17/104 (16%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           M  A+  +   V      P    +IV K G V+ +G            HAE+ A+  A +
Sbjct: 18  MEEAVAEACRGVECGDGGP-FGAVIVDKKGNVVAKGHNMVIVTNDPTMHAEMTAIRNACK 76

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                +  G T Y +  PC      P C    +      +    
Sbjct: 77  ALGTFDLSGHTLYTSCYPC------PMCMGASLWARFDAIYYGA 114


>gi|299115986|emb|CBN75987.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 284

 Score = 53.7 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 55/154 (35%), Gaps = 35/154 (22%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV------------------ 46
           +D  FMS A   +         +  V   IV  D  ++G G                   
Sbjct: 128 WDDYFMSVAFLSAMRSK---DPSTQVGACIVNEDKRIVGIGYNGFPMGCSDDDLPWARQA 184

Query: 47  -----TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                T Y    HAE+ A L +   + +G   YV L PC+       CA+ II+ GIR V
Sbjct: 185 DDELDTKYPYVCHAEMNAILNKNSADVKGCLIYVALFPCNE------CAKLIIQSGIREV 238

Query: 101 VVCVDDPDVRVSGRGLQWLSQ-KGIIVDRMMESE 133
           V   D      S +  + L    G+   + +  +
Sbjct: 239 VYLSDKYRETNSMKASRRLFDLSGVKCRQHIPKQ 272


>gi|269976007|ref|ZP_06183011.1| tRNA-specific adenosine deaminase [Mobiluncus mulieris 28-1]
 gi|306817398|ref|ZP_07451143.1| tRNA-specific adenosine deaminase [Mobiluncus mulieris ATCC 35239]
 gi|269935835|gb|EEZ92365.1| tRNA-specific adenosine deaminase [Mobiluncus mulieris 28-1]
 gi|304649839|gb|EFM47119.1| tRNA-specific adenosine deaminase [Mobiluncus mulieris ATCC 35239]
          Length = 174

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 47/131 (35%), Gaps = 19/131 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY-----GGCPHA 55
            +S  + R +  A   +       S +  V  +++   GIV G G+            HA
Sbjct: 5   SLSVAEQRALDTAFDLAARAA--VSGDVPVGAVLLTAQGIVAGLGLNQREIPPHDPTAHA 62

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+ EA    R     G T  VTLEPC        CA  I+   I R++    D    
Sbjct: 63  EIVAMREAAGRLRTWNLAGCTLVVTLEPC------TMCAGAIVTARISRLIFGAWDSKAG 116

Query: 111 VSGRGLQWLSQ 121
             G     +  
Sbjct: 117 ACGSIRDVVRD 127


>gi|42521861|ref|NP_967241.1| cytosine deaminase [Bdellovibrio bacteriovorus HD100]
 gi|39574391|emb|CAE77895.1| Cytosine deaminase [Bdellovibrio bacteriovorus HD100]
          Length = 313

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 68/198 (34%), Gaps = 23/198 (11%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56
           M   + D ++M      +            VA ++V    +I   +           HAE
Sbjct: 1   MNTPAHDEKWMRK--ALALARKAAEREEVPVAAIVVGPEGMISYAINTRERQQSPLGHAE 58

Query: 57  VQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + AL +A ++         T YVTLEPC        CA  I +  I RVV    D     
Sbjct: 59  LLALHKASQKRGSWRLSDCTLYVTLEPC------VMCAGAIQQSRIARVVYGAKDVKAGA 112

Query: 112 SGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIG 165
                  L       +  +   ++E +    L  +   R+ EK+S    K+   + +++ 
Sbjct: 113 VESLYHILKDPRLNHQVEVSSGILEDDCSELLQDFFKGRRDEKKSEKAQKVFRDRASVVV 172

Query: 166 MAGCGSVPITGFISKNQV 183
           +     +       + QV
Sbjct: 173 LHEGKVLGFHAVDPRAQV 190


>gi|73667189|ref|YP_303205.1| cytidine/deoxycytidylate deaminase, zinc-binding region [Ehrlichia
           canis str. Jake]
 gi|72394330|gb|AAZ68607.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Ehrlichia
           canis str. Jake]
          Length = 139

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 53/146 (36%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEE 66
           M  A+  ++  +        V  +IV +  VI     +         HAE+ A+ EA + 
Sbjct: 1   MKLAISKAQEDLSEV----PVGAVIVYNDEVISSSNNSNIQNTDPTAHAEILAIREACKI 56

Query: 67  ARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD---VRVSGRGLQW 118
                      YVTLEPC+       CAQ I    +RR+     +     +    R  Q+
Sbjct: 57  LSTQILDQCDIYVTLEPCAM------CAQAISFAKLRRLYFGAYNKKYGAIENGARIFQF 110

Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTR 144
                 I   ++E+E    +  +  +
Sbjct: 111 CHHVPEIYGGILENENIKLITDFFKK 136


>gi|157826299|ref|YP_001494019.1| cytosine deaminase [Rickettsia akari str. Hartford]
 gi|157800257|gb|ABV75511.1| cytosine deaminase [Rickettsia akari str. Hartford]
          Length = 159

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 48/133 (36%), Gaps = 24/133 (18%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTN-PSVACLIVK--DGIVIGRGVT----AYGGCP 53
           M  ++F   FM  AL+ +R        N   V  ++V+  +  ++               
Sbjct: 9   MSFNNF---FMEQALKQARLAF---DKNEVPVGAVMVERLNQKIVINSHNNTEEKNNALY 62

Query: 54  HAEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+ A+ E       +       YVTLEPC+       CA  I    ++R+     D  
Sbjct: 63  HAEIIAINEVCNLISSKNLNDYDIYVTLEPCAM------CAAAIAHSRLKRLFYGASDSK 116

Query: 109 VRVSGRGLQWLSQ 121
                  L++ + 
Sbjct: 117 HGAVESNLRYFNS 129


>gi|168178781|ref|ZP_02613445.1| guanine deaminase [Clostridium botulinum NCTC 2916]
 gi|182671437|gb|EDT83411.1| guanine deaminase [Clostridium botulinum NCTC 2916]
          Length = 157

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 30/90 (33%), Gaps = 15/90 (16%)

Query: 30  SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
                IVK G VI        G      H EV  + +A +     +  G   Y T EPC 
Sbjct: 25  PFGSAIVKAGQVIAVAHNTVVGDNDPTAHGEVNVIRKACKKLNTFDLSGCELYTTSEPC- 83

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
                P C   II   I +V       D R
Sbjct: 84  -----PMCMSAIIWANISKVYYGCTVEDAR 108


>gi|170584686|ref|XP_001897125.1| dCMP deaminase [Brugia malayi]
 gi|158595455|gb|EDP34008.1| dCMP deaminase, putative [Brugia malayi]
          Length = 205

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 48/147 (32%), Gaps = 34/147 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP---------- 53
           S++  FM  A   +            V  +IV +D  ++G G                  
Sbjct: 44  SWEEYFMGVAHMAALRSK---DPITQVGAVIVNQDKRIVGSGYNGMPTGCSDDVLPWGKD 100

Query: 54  -------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                        HAE+ A L +     +G+T Y  L PC+       CA+ II+ GI  
Sbjct: 101 PENFLENKSAYVCHAELNAILNKIVGSIKGSTIYTVLFPCNE------CAKLIIQAGISE 154

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIV 126
           VV   +      +    +     G+  
Sbjct: 155 VVFQREKEKKVNTIASKRMFDLAGVRY 181


>gi|260436012|ref|ZP_05789982.1| tRNA-adenosine deaminase [Synechococcus sp. WH 8109]
 gi|260413886|gb|EEX07182.1| tRNA-adenosine deaminase [Synechococcus sp. WH 8109]
          Length = 167

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 57/149 (38%), Gaps = 23/149 (15%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCP----HAEVQALEEA 63
           R+M   L+ +    G     P VA +I+   G  IG G            HAE+ AL++A
Sbjct: 19  RWMDVLLQRAEEA-GAEGEVP-VAAVILDGQGRAIGHGRNRRQNDRDPLGHAELVALQQA 76

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                       T  VTLEPC      P CA  +++  +  V+    DP     G  L  
Sbjct: 77  AIVQDDWRFNNCTLIVTLEPC------PMCAGALVQARMGTVIFAASDPKRGGLGGSLDL 130

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYL 142
            +         +++ + E E +  L ++ 
Sbjct: 131 STHASAHHHMKVIEGVREPEAREQLESWF 159


>gi|320159274|ref|YP_004191652.1| dihydrofolate reductase-like protein [Vibrio vulnificus MO6-24/O]
 gi|319934586|gb|ADV89449.1| dihydrofolate reductase [Vibrio vulnificus MO6-24/O]
          Length = 177

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
           L  ++  L  +G   L ++GG  V  SF+   L+D +I+    +++G G    PL     
Sbjct: 96  LPTVVEQLHQQGYQRLYIDGGKTV-QSFLAEDLIDEMIITTIPVLLGAG---IPLFGSLP 151

Query: 335 EK-NFMCVRRDYFGS 348
           +  NF  +  +    
Sbjct: 152 KALNFKHIHAERLAD 166


>gi|156055334|ref|XP_001593591.1| hypothetical protein SS1G_05018 [Sclerotinia sclerotiorum 1980]
 gi|154702803|gb|EDO02542.1| hypothetical protein SS1G_05018 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 358

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 47/149 (31%), Gaps = 41/149 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP-- 53
           S+D  FM  A   +            V C++V++  VI  G             GGCP  
Sbjct: 201 SWDQYFMQLA-SLAAQRSNCMKR--RVGCVLVREKRVISTGYNGTPRGLLNCGEGGCPRC 257

Query: 54  ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                           HAE  AL EAG E     A  Y    PC        C+  I++ 
Sbjct: 258 NEGQSCGVGLGTCLCLHAEENALLEAGRERVRENAILYCDTCPCL------TCSIKIVQV 311

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           GI  VV         +         Q G+
Sbjct: 312 GISEVVYSQGYS---MDAETAAVFGQAGV 337


>gi|322510984|gb|ADX06297.1| deoxycytidylate deaminase domain-containing protein [Organic Lake
           phycodnavirus 2]
          Length = 142

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 24/109 (22%)

Query: 31  VACLIVKDGIVIGRGVTAY-GGCP--------------HAEVQALEEA---GEEARGATA 72
           V CLIV+D  +I +G   +  G P              HAE  AL +    G     + A
Sbjct: 31  VGCLIVRDNRIISQGYNGFLPGLPHTSVVVDNHEIATIHAEQNALTDCAKRGVSCDKSVA 90

Query: 73  YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           Y+T  PC +      CA+ +   GI+ +    D  +         +  +
Sbjct: 91  YITHYPCLN------CAKLLYSAGIKDIYYIEDYKNSSQLRDIGLFHKE 133


>gi|260770055|ref|ZP_05878988.1| putative deoxycytidylate deaminase [Vibrio furnissii CIP 102972]
 gi|260615393|gb|EEX40579.1| putative deoxycytidylate deaminase [Vibrio furnissii CIP 102972]
 gi|315182578|gb|ADT89491.1| deoxycytidylate deaminase, hypothetical [Vibrio furnissii NCTC
           11218]
          Length = 154

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 38/125 (30%), Gaps = 28/125 (22%)

Query: 31  VACLIVKDGIVIGRGVTAYGG-----------------CPHAEVQALEEAGEEARGATAY 73
           V  +I K   ++  G   Y                     HAE  A+  A  +  G   Y
Sbjct: 27  VGAVITKQNRIVSVGFNGYPHGISDSANTDDRDMKYLKTLHAEENAILFAKRDLDGCEIY 86

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS-----GRGLQWLSQKGIIVDR 128
           VT  PC      P CA  II+ GI  V       D                 Q G+ V+ 
Sbjct: 87  VTHFPC------PNCAAKIIQTGISAVHCPEQSADFLSRWGDKIKVSQDMFLQAGVKVNW 140

Query: 129 MMESE 133
           +   E
Sbjct: 141 LPVHE 145


>gi|166368807|ref|YP_001661080.1| zinc-binding CMP/dCMP deaminase [Microcystis aeruginosa NIES-843]
 gi|166091180|dbj|BAG05888.1| zinc-binding CMP/dCMP deaminase [Microcystis aeruginosa NIES-843]
          Length = 178

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 55/165 (33%), Gaps = 39/165 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCPH--------- 54
           ++D  F+  A + +      T     V  +IVKD  V+  G      G  H         
Sbjct: 10  TWDEYFLMIA-KLA--ATRSTCLAFPVGAVIVKDRQVLATGYNGSPSGTVHCTAQGFCYP 66

Query: 55  --------AEV--QALE----------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                    E+  +A+           + G   +GA+ YVTLEPC        C + II 
Sbjct: 67  GLGTCRESGEIPSRAIHAEANAIAQAAKHGISTQGASIYVTLEPCI------SCLKLIIS 120

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
            GI+ V    D      +     +L    I   ++  SE      
Sbjct: 121 SGIKEVFYEADFNSGTKAMLRDSFLETGIIKYKKIYLSEEMASHA 165


>gi|302342017|ref|YP_003806546.1| CMP/dCMP deaminase zinc-binding protein [Desulfarculus baarsii DSM
           2075]
 gi|301638630|gb|ADK83952.1| CMP/dCMP deaminase zinc-binding protein [Desulfarculus baarsii DSM
           2075]
          Length = 171

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 62/156 (39%), Gaps = 23/156 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIG----RGVTAYGGCPHAEV 57
           ++  D R M+  LR +R    L  T   +  ++V   G V+     R ++      HAE+
Sbjct: 9   LAQADRRHMALCLRLARRAARLGET--PIGAVLVDAAGRVLAAHGNRAISHTDPTAHAEM 66

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
             L +A          G+T YV+LEPC      P CA  I+   +RRVV    DP     
Sbjct: 67  LVLRQAAAAMGNYRLVGSTLYVSLEPC------PMCAGAIVWARVRRVVYGAADPKAGAL 120

Query: 113 GRGLQWLSQKG-----IIVDRMMESEGKIFLHAYLT 143
           G  L    Q G     I+   ++  E    L  +  
Sbjct: 121 GSALDLSRQPGLNHRPIVEGGLLAEESAALLREFFQ 156


>gi|154417757|ref|XP_001581898.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121916129|gb|EAY20912.1| hypothetical protein TVAG_437380 [Trichomonas vaginalis G3]
          Length = 238

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 66/193 (34%), Gaps = 29/193 (15%)

Query: 145 QVEKRSHITLKIAVSQD-----NMIGMAGCGSV----PITGFISKNQVHLL-RAQSDAIL 194
              +R  + +   +S +                      TG   K    L  R   DA+L
Sbjct: 1   MNSERPFVNIHSMISLNGKMVGPYWNTENGSVTFNDYEWTGESYKPDAWLWGRRTFDAVL 60

Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMRII--------LDPHFKLSLDSKIIK--TALLAP 244
             I     D+P +        E     +         +DP  KL  D   +K      + 
Sbjct: 61  PSI-----DNPPVDENEKECPEGDFYAVTDAGKYLVAMDPSGKLPWDRNTVKYMDRPESH 115

Query: 245 VI-IVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVG-RGVTSLLVEGGAAVAH 300
           VI  +TE   P      R+ N++ I    D  D + LLT L     +  L + GG  +  
Sbjct: 116 VIEALTEKASPQYKNLLRRLNVSYIIAGKDEIDWEILLTKLKKVFHINILSIAGGGMINW 175

Query: 301 SFINSRLVDSIIL 313
           S + +++VD + L
Sbjct: 176 SAMKAKIVDELSL 188


>gi|325912230|ref|ZP_08174627.1| putative ComE operon protein 2 [Lactobacillus iners UPII 143-D]
 gi|325912505|ref|ZP_08174895.1| putative ComE operon protein 2 [Lactobacillus iners UPII 60-B]
 gi|325475889|gb|EGC79058.1| putative ComE operon protein 2 [Lactobacillus iners UPII 143-D]
 gi|325478178|gb|EGC81300.1| putative ComE operon protein 2 [Lactobacillus iners UPII 60-B]
          Length = 157

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 54/153 (35%), Gaps = 34/153 (22%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP------------- 53
             FM  AL  S+     T     V  ++VKD  +I  G      G P             
Sbjct: 10  QYFMMQALVISQRS---TCDRALVGSVLVKDKRMIATGYNGSVTGEPHCDDEGHLMIDGH 66

Query: 54  -----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                H+E+ AL +    G    G   YVT  PC +      C + +++ GI  V     
Sbjct: 67  CVRTIHSEMNALIQCAKNGISTEGCAIYVTHFPCYN------CTKALVQAGIVEVNY--- 117

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138
             D R +   +  LS K I V ++   +  +  
Sbjct: 118 YYDYRDNPLVMSLLSDKHIKVQKINIDKKYLHN 150


>gi|309808484|ref|ZP_07702383.1| putative ComE operon protein 2 [Lactobacillus iners LactinV 01V1-a]
 gi|308168312|gb|EFO70431.1| putative ComE operon protein 2 [Lactobacillus iners LactinV 01V1-a]
          Length = 157

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 54/153 (35%), Gaps = 34/153 (22%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP------------- 53
             FM  AL  S+     T     V  ++VKD  +I  G      G P             
Sbjct: 10  QYFMMQALVISQRS---TCDRALVGSVLVKDKRMIATGYNGSVTGEPHCDDEGHLMVDGH 66

Query: 54  -----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                H+E+ AL +    G    G   YVT  PC +      C + +++ GI  V     
Sbjct: 67  CVRTIHSEMNALIQCAKNGISTEGCAIYVTHFPCYN------CTKALVQAGIVEVNY--- 117

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138
             D R +   +  LS K I V ++   +  +  
Sbjct: 118 YYDYRDNPLVMSLLSDKHIKVQKINIDKKYLHN 150


>gi|313617055|gb|EFR89635.1| riboflavin biosynthesis protein RibD C- domain protein [Listeria
           innocua FSL S4-378]
          Length = 176

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           + + GGA +   F+  + +D  ++  + I++G+G    PL E   E          FG  
Sbjct: 109 VWLVGGAQLVKQFLKEKAIDRFVITIAPIILGKG---IPLFEEDQEHALELEEVTRFGQF 165

Query: 350 VCLEY 354
             L Y
Sbjct: 166 AQLTY 170


>gi|162452397|ref|YP_001614764.1| cytosine/adenosine deaminase [Sorangium cellulosum 'So ce 56']
 gi|161162979|emb|CAN94284.1| cytosine/adenosine deaminase [Sorangium cellulosum 'So ce 56']
          Length = 163

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GG----CPHAE 56
             DA FM  A+        L + N     ++V+ G V+            G      HAE
Sbjct: 8   PLDAGFMQLAVD--ASSDALRAGNMPFGAVLVQGGQVLQVSCNQRRTANAGEGDCTAHAE 65

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           V  + EA      E   G T Y + EPC+       C+  +   G+ R+V     PD
Sbjct: 66  VMLIREATAAHGPEALAGGTVYASGEPCAM------CSGALFWAGVSRIVYAASTPD 116


>gi|16801778|ref|NP_472046.1| hypothetical protein lin2717 [Listeria innocua Clip11262]
 gi|16415253|emb|CAC97943.1| lin2717 [Listeria innocua Clip11262]
 gi|313622287|gb|EFR92786.1| riboflavin biosynthesis protein RibD C- domain protein [Listeria
           innocua FSL J1-023]
          Length = 174

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           + + GGA +   F+  + +D  ++  + I++G+G    PL E   E          FG  
Sbjct: 107 VWLVGGAQLVKQFLKEKAIDRFVITIAPIILGKG---IPLFEEDQEHALELEEVTRFGQF 163

Query: 350 VCLEY 354
             L Y
Sbjct: 164 AQLTY 168


>gi|160901517|ref|YP_001567098.1| dihydrofolate reductase region [Petrotoga mobilis SJ95]
 gi|160359161|gb|ABX30775.1| dihydrofolate reductase region [Petrotoga mobilis SJ95]
          Length = 176

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 5/114 (4%)

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           I++T N  P        K    +Y      + LL  L  +G   + + GG+ +   F+  
Sbjct: 64  IVLTGN--PEKYKEVELKYDKYLYFTDNPPEILLDKLEKKGYPEVALIGGSTINSLFLEK 121

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIGKN 358
            L+D I L    ++I   G  S  +    + NF          D + L Y+  +
Sbjct: 122 NLIDEIFLTIEPVII--EGDLSIFKYVNDKYNFKLTDFKKLNEDTILLHYLKTD 173


>gi|315174005|gb|EFU18022.1| ComE operon protein 2 [Enterococcus faecalis TX1346]
          Length = 167

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 51/140 (36%), Gaps = 31/140 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M    +D  FM  ++  S      T T  +V   IV+D  +I  G      GG       
Sbjct: 1   MERIPWDQYFMGQSVLLSLRS---TCTRLTVGATIVRDKRIIAGGYNGSVSGGTHCIDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A+ +    G    GA  YVT  PC        C + I++ GI+
Sbjct: 58  CYVVDNHCVRTIHAEMNAILQCAKFGVPTEGAEIYVTHFPCLQ------CTKMILQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQW 118
           ++    D  +   +   ++ 
Sbjct: 112 KIYYLKDYRNDEYALNLIEQ 131


>gi|301111742|ref|XP_002904950.1| deoxycytidylate deaminase [Phytophthora infestans T30-4]
 gi|262095280|gb|EEY53332.1| deoxycytidylate deaminase [Phytophthora infestans T30-4]
          Length = 252

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 53/153 (34%), Gaps = 37/153 (24%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
           S+D  FMS A   +         +  V   IV  +  ++G G                  
Sbjct: 94  SWDDYFMSVAFLSAMRSK---DPSTQVGACIVNPERKIVGIGYNGFPNGCGDDELPWARE 150

Query: 47  --------TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                   T Y    HAE+ A L +   + +G + YV L PC+       CA+ II+ GI
Sbjct: 151 TATNSPLDTKYPYVCHAEMNAILNKNSTDVKGCSIYVALFPCNE------CAKLIIQSGI 204

Query: 98  RRVVVCVDDPDVR-VSGRGLQWLSQKGIIVDRM 129
            RVV   D            + L   G+   + 
Sbjct: 205 ARVVYFSDKYKSDWKFVASRRLLDMAGVQYTQH 237


>gi|291303195|ref|YP_003514473.1| bifunctional deaminase-reductase domain-containing protein
           [Stackebrandtia nassauensis DSM 44728]
 gi|290572415|gb|ADD45380.1| bifunctional deaminase-reductase domain protein [Stackebrandtia
           nassauensis DSM 44728]
          Length = 176

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           RDL  L+     RG+T +  +GG  +  SF+ +  +D  I+  + ++IG G
Sbjct: 93  RDLDDLVADFDKRGITHVYPDGG-RLIQSFVRAGRIDRFIISVAPVLIGAG 142


>gi|227876439|ref|ZP_03994551.1| nucleoside deaminase [Mobiluncus mulieris ATCC 35243]
 gi|227842980|gb|EEJ53177.1| nucleoside deaminase [Mobiluncus mulieris ATCC 35243]
          Length = 174

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 47/131 (35%), Gaps = 19/131 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY-----GGCPHA 55
            +S  + R +  A   +       S +  V  +++   GIV G G+            HA
Sbjct: 5   SLSVAEQRALDTAFDLAARAA--VSGDVPVGAVLLTAQGIVAGLGLNQREIPPHDPTAHA 62

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+ EA    R     G T  VTLEPC        CA  I+   I R++    D    
Sbjct: 63  EIVAMREAAGRLRTWNLAGCTLVVTLEPC------TMCAGAIVTARISRLIFGAWDSKAG 116

Query: 111 VSGRGLQWLSQ 121
             G     +  
Sbjct: 117 ACGSIRDVVRD 127


>gi|306826735|ref|ZP_07460037.1| competence protein ComEB [Streptococcus pyogenes ATCC 10782]
 gi|304431024|gb|EFM34031.1| competence protein ComEB [Streptococcus pyogenes ATCC 10782]
          Length = 163

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 51/148 (34%), Gaps = 36/148 (24%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY---------GG-------- 51
            FM+ A   S+     T     V  ++VKD  +I  G              G        
Sbjct: 20  YFMANAELISKRS---TCDRAFVGAVLVKDNRIIATGYNGGVSATDNCNEAGHYMEDGHC 76

Query: 52  --CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV-CVD 105
               HAE+ AL +    G    G   YVT  PC +      C + +++ GI ++      
Sbjct: 77  IRTVHAEMNALIQCAKEGISTDGTEIYVTHFPCIN------CTKALLQAGITKITYKAHY 130

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESE 133
            P        ++ + +KG+   +    +
Sbjct: 131 RPHPFA----IELMEKKGVAYVQHDVPQ 154


>gi|46137423|ref|XP_390403.1| hypothetical protein FG10227.1 [Gibberella zeae PH-1]
          Length = 467

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 46/149 (30%), Gaps = 42/149 (28%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG---------GCP-- 53
           +D  FM  A   +            V C++V K+  VI  G              GCP  
Sbjct: 231 WDLYFMELA-SLAAQRSNCMKR--RVGCVLVGKERRVISTGYNGTPRGLQNCADGGCPRC 287

Query: 54  ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                           HAE  AL EAG E    G+  Y    PC        C+  I + 
Sbjct: 288 NDGNSSGVGLSTCLCIHAEENALLEAGRERIREGSILYCDTCPCL------TCSIKICQV 341

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           GI  VV         +     +   + G+
Sbjct: 342 GISEVVYAHTYS---MDNDTARVFREAGV 367


>gi|225387920|ref|ZP_03757684.1| hypothetical protein CLOSTASPAR_01690 [Clostridium asparagiforme
           DSM 15981]
 gi|225045989|gb|EEG56235.1| hypothetical protein CLOSTASPAR_01690 [Clostridium asparagiforme
           DSM 15981]
          Length = 161

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 18/114 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGR----GVTAYGGCPHAEVQA 59
           + D R +   +  SR      + N     L+  K+G ++       +T      HAE QA
Sbjct: 4   TTDIRNLKRCVEISRQSR--ANGNTPFGALLADKEGNILLEQPNVEITEKKCTGHAETQA 61

Query: 60  LEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            E A      E  +  T Y T EPC+       CA  I   GI RVV  + + +
Sbjct: 62  AERASQLYSREFLKDCTLYTTAEPCAM------CAGAIYWAGIGRVVYGMTEKE 109


>gi|255027097|ref|ZP_05299083.1| hypothetical protein LmonocytFSL_13573 [Listeria monocytogenes FSL
           J2-003]
          Length = 91

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           + + GGA +   F+  R +D  ++  + I++G+G    PL E   E          FG  
Sbjct: 24  IWLVGGAKLVQQFLKERAIDRFVITIAPIILGKG---IPLFEEDQEHALELEEVTRFGQF 80

Query: 350 VCLEY 354
             L Y
Sbjct: 81  AQLTY 85


>gi|284803011|ref|YP_003414876.1| hypothetical protein LM5578_2768 [Listeria monocytogenes 08-5578]
 gi|284996152|ref|YP_003417920.1| hypothetical protein LM5923_2717 [Listeria monocytogenes 08-5923]
 gi|284058573|gb|ADB69514.1| hypothetical protein LM5578_2768 [Listeria monocytogenes 08-5578]
 gi|284061619|gb|ADB72558.1| hypothetical protein LM5923_2717 [Listeria monocytogenes 08-5923]
          Length = 175

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           + + GGA +   F+  R +D  ++  + I++G+G    PL E   E          FG  
Sbjct: 108 IWLVGGAKLVQQFLKERAIDRFVITIAPIILGKG---IPLFEEDQEHALELEEVTRFGQF 164

Query: 350 VCLEY 354
             L Y
Sbjct: 165 AQLTY 169


>gi|16804610|ref|NP_466095.1| hypothetical protein lmo2572 [Listeria monocytogenes EGD-e]
 gi|47097116|ref|ZP_00234685.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224500472|ref|ZP_03668821.1| hypothetical protein LmonF1_12714 [Listeria monocytogenes Finland
           1988]
 gi|224503636|ref|ZP_03671943.1| hypothetical protein LmonFR_14218 [Listeria monocytogenes FSL
           R2-561]
 gi|254829526|ref|ZP_05234213.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|254831003|ref|ZP_05235658.1| hypothetical protein Lmon1_06573 [Listeria monocytogenes 10403S]
 gi|254900975|ref|ZP_05260899.1| hypothetical protein LmonJ_14211 [Listeria monocytogenes J0161]
 gi|254913811|ref|ZP_05263823.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254938200|ref|ZP_05269897.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|16412060|emb|CAD00650.1| lmo2572 [Listeria monocytogenes EGD-e]
 gi|47014521|gb|EAL05485.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601941|gb|EEW15266.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258610812|gb|EEW23420.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|293591828|gb|EFG00163.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 174

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           + + GGA +   F+  R +D  ++  + I++G+G    PL E   E          FG  
Sbjct: 107 IWLVGGAKLVQQFLKERAIDRFVITIAPIILGKG---IPLFEEDQEHALELEEVTRFGQF 163

Query: 350 VCLEY 354
             L Y
Sbjct: 164 AQLTY 168


>gi|317507917|ref|ZP_07965613.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Segniliparus rugosus ATCC BAA-974]
 gi|316253782|gb|EFV13156.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Segniliparus rugosus ATCC BAA-974]
          Length = 166

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 47/131 (35%), Gaps = 22/131 (16%)

Query: 30  SVACLIV-KDGIVIGRGVTAYGG----CPHAEVQALEEA------GEEARGATAYVTLEP 78
            V  ++   DG  + R   A         HAE+ AL +A      G    G T  VTLEP
Sbjct: 30  PVGAVVFGPDGAELARAANAREALGDPTAHAEILALRQAAAVLGDGWRLVGCTLAVTLEP 89

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESE 133
           C        CA   +   I R+V    +P     G          L+ + ++   ++E E
Sbjct: 90  C------TMCAGAAVNARIGRIVFGAREPKTGAVGSLWDVVTDPRLNHRPLVRPGVLEPE 143

Query: 134 GKIFLHAYLTR 144
                 ++  +
Sbjct: 144 CAELTRSFFRK 154


>gi|162457300|ref|YP_001619667.1| dCMP deaminase [Sorangium cellulosum 'So ce 56']
 gi|161167882|emb|CAN99187.1| dCMP deaminase [Sorangium cellulosum 'So ce 56']
          Length = 135

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 52/148 (35%), Gaps = 35/148 (23%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------------- 53
           M  A   +      T     V  +IV+D  ++  G      G P                
Sbjct: 1   MRIAEVVASRA---TCDRKHVGAVIVRDKSILATGYNGSIRGLPHCDEDGHLIEDGHCVR 57

Query: 54  --HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
             HAE  A+ +A   G    GAT YVT  PC  +G    C + I   G+ RVV      D
Sbjct: 58  TIHAEANAIIQAARNGVRIDGATVYVTASPC--WG----CFKMIANAGLSRVVFGEFYRD 111

Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKI 136
                R  ++ ++ GI +  +   E   
Sbjct: 112 ----ERIFRFATELGIELAPLERRETPA 135


>gi|52842205|ref|YP_096004.1| dihydrofolate reductase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52629316|gb|AAU28057.1| dihydrofolate reductase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 181

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 10/97 (10%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           PVI+++        +   +   +II    +   +L + L   G+  + ++GG      F+
Sbjct: 74  PVIVLSS-----KPIQIPEHLRHIISVSNQSPIELASELAHYGIQHVYLDGG-ITIQRFL 127

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
            + L+D I +    ++IG G    PL  G+LE +   
Sbjct: 128 QNNLIDEITITMIPVLIGSGR---PLF-GFLENDIKL 160


>gi|15828749|ref|NP_326109.1| deoxycytidylate deaminase (dCMP deaminase) [Mycoplasma pulmonis UAB
           CTIP]
 gi|14089691|emb|CAC13451.1| DEOXYCYTIDYLATE DEAMINASE (DCMP DEAMINASE) [Mycoplasma pulmonis]
          Length = 154

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 40/127 (31%), Gaps = 33/127 (25%)

Query: 5   SFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDG-IVIGRGVT--------------- 47
            +D  FM      ++   +     N  V   I+ D   VI  G                 
Sbjct: 8   DWDEYFML----LAKVSSLRSKDPNTRVGACIINDKKRVIALGYNGMPLGNDFFPWSKDA 63

Query: 48  ------AYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                  Y    HAE+ A+         A  Y TL PCS+  ++      I + GI+ +V
Sbjct: 64  ENEKDKKYAYVIHAELNAILNTTTLLENAVLYTTLFPCSNCAKT------ITQTGIKEIV 117

Query: 102 VCVDDPD 108
              D   
Sbjct: 118 YEQDFYH 124


>gi|302875602|ref|YP_003844235.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulovorans 743B]
 gi|307690132|ref|ZP_07632578.1| CMP/dCMP deaminase zinc-binding protein [Clostridium cellulovorans
           743B]
 gi|302578459|gb|ADL52471.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulovorans 743B]
          Length = 156

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 42/123 (34%), Gaps = 33/123 (26%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
             FM+ A + +         N  V  +IV  +  ++  G     G               
Sbjct: 23  EYFMNLA-KLAAERSTCDRAN--VGAVIVNSENRIVATGYNGSVGSKTPHCDDIGHVMRE 79

Query: 54  -------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE+  L    + G   + +  YVT  PC +      C + +I+ GI+++   
Sbjct: 80  NHCIATQHAEINCLCYCAKEGIPVKNSVIYVTHFPCLN------CTKALIQAGIKKIYYS 133

Query: 104 VDD 106
            D 
Sbjct: 134 NDY 136


>gi|28379302|ref|NP_786194.1| reductase (putative) [Lactobacillus plantarum WCFS1]
 gi|300766764|ref|ZP_07076679.1| dihydrofolate reductase [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|28272141|emb|CAD65045.1| reductase (putative) [Lactobacillus plantarum WCFS1]
 gi|300495672|gb|EFK30825.1| dihydrofolate reductase [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
          Length = 179

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-EKNFMCVRRDYFGS 348
           + + GGA V    + + LVD + +  + +++G+G    PL +    ++ F  V  + +G 
Sbjct: 111 IWIVGGAGVLMPLLAADLVDELYIQIAPVILGDG---IPLFKAIDQQQRFELVDTNRYGQ 167


>gi|308181501|ref|YP_003925629.1| reductase (putative) [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|308046992|gb|ADN99535.1| reductase (putative) [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 179

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-EKNFMCVRRDYFGS 348
           + + GGA V    + + LVD + +  + +++G+G    PL +    ++ F  V  + +G 
Sbjct: 111 IWIVGGAGVLMPLLAADLVDELYIQIAPVILGDG---IPLFKAIDQQQRFELVDTNRYGQ 167


>gi|225055376|gb|ACN80662.1| Tsr4 [Streptomyces laurentii]
          Length = 142

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 21/128 (16%)

Query: 30  SVACLIVK-DGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPC 79
            V  +++  DG V+  G            HAEV AL  A          G T  VTLEPC
Sbjct: 18  PVGAVVLAPDGSVLATGHNEREATGDPTAHAEVLALRRAAAATGEWRLTGCTLVVTLEPC 77

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEG 134
                   CA  +++  + RVV    D     +G          L+ +  ++  ++E+E 
Sbjct: 78  ------VMCAGALVQARVERVVFGAFDEKAGATGSLWDLVRDRRLNHRPEVIHGVLEAEC 131

Query: 135 KIFLHAYL 142
              L A+ 
Sbjct: 132 SAQLTAFF 139


>gi|126695459|ref|YP_001090345.1| RibD/RibG domain-containing protein [Prochlorococcus marinus str.
           MIT 9301]
 gi|126542502|gb|ABO16744.1| RibD/ribG C-terminal domain-containing protein [Prochlorococcus
           marinus str. MIT 9301]
          Length = 216

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 65/168 (38%), Gaps = 12/168 (7%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
                + + IA S D  I   G G   +     K  ++   +  DA + G+GT++A    
Sbjct: 1   MSIPRVIIVIASSLDGRIAFPGGGESHLGSDEDKKILNQNLSMVDATIFGLGTLVAHQST 60

Query: 207 LTCR------LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
              +         + +  P+ I+     K + + K  +  +   +I    +   V   + 
Sbjct: 61  YLVKNLNDNDEVNISKSQPISIVASNSKKFNNNWKYFRQPIRRWLI----SSSKVDNSSN 116

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
            +    + + D    +K L  L  +G+  L + GGA + +SFI   L+
Sbjct: 117 NEFEKELFFEDS--WEKTLISLKKQGINDLALLGGAKLINSFIKEDLI 162


>gi|6322425|ref|NP_012499.1| Tad2p [Saccharomyces cerevisiae S288c]
 gi|1352970|sp|P47058|TAD2_YEAST RecName: Full=tRNA-specific adenosine deaminase subunit TAD2;
           AltName: Full=tRNA-specific adenosine-34 deaminase
           subunit TAD2
 gi|1008159|emb|CAA89326.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|6434057|emb|CAB60629.1| tRNA-specific adenosine-34 deaminase subunit Tad2p/ADAT2
           [Saccharomyces cerevisiae]
 gi|51013795|gb|AAT93191.1| YJL035C [Saccharomyces cerevisiae]
 gi|151945050|gb|EDN63301.1| tRNA-specific adenosine deaminase subunit [Saccharomyces cerevisiae
           YJM789]
 gi|285812866|tpg|DAA08764.1| TPA: Tad2p [Saccharomyces cerevisiae S288c]
          Length = 250

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 66/198 (33%), Gaps = 36/198 (18%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYG----GCPHAEVQALEE 62
           + M  A+R +R+ +    T   VAC+ V    G V+  G+        G  HAE   +++
Sbjct: 5   KHMRTAVRLARYALDHDET--PVACIFVHTPTGQVMAYGMNDTNKSLTGVAHAEFMGIDQ 62

Query: 63  --AGEEARGA-------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP------ 107
             A   +RG        T YVT+EPC        CA  + +  I +VV    +       
Sbjct: 63  IKAMLGSRGVVDVFKDITLYVTVEPCIM------CASALKQLDIGKVVFGCGNERFGGNG 116

Query: 108 -----DVRVSGRGLQWLSQKGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
                +        +  S  G   +  ++  E  + L  +  RQ E+      K     D
Sbjct: 117 TVLSVNHDTCTLVPKNNSAAGYESIPGILRKEAIMLLRYFYVRQNERAPKPRSKSDRVLD 176

Query: 162 NMIGMAGCGSVPITGFIS 179
                            +
Sbjct: 177 -KNTFPPMEWSKYLNEEA 193


>gi|254557435|ref|YP_003063852.1| reductase (putative) [Lactobacillus plantarum JDM1]
 gi|254046362|gb|ACT63155.1| reductase (putative) [Lactobacillus plantarum JDM1]
          Length = 179

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-EKNFMCVRRDYFGS 348
           + + GGA V    + + LVD + +  + +++G+G    PL +    ++ F  V  + +G 
Sbjct: 111 IWIVGGAGVLMPLLAADLVDELYIQIAPVILGDG---IPLFKAIDQQQRFELVDTNRYGQ 167


>gi|54022202|ref|YP_116444.1| putative cytidine/deoxycytidylate deaminase [Nocardia farcinica IFM
           10152]
 gi|54013710|dbj|BAD55080.1| putative cytidine/deoxycytidylate deaminase [Nocardia farcinica IFM
           10152]
          Length = 159

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 52/157 (33%), Gaps = 25/157 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGG----CPHAEVQA 59
           + D   +  A+  +            V  ++    G  + R   A         HAE+ A
Sbjct: 11  AADEAMIRVAIEAAAAADPRDVP---VGAVVFDAQGRELARAANAREASGDPTAHAEILA 67

Query: 60  LEEA------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           L  A      G    GAT  VTLEPC        CA  ++   + R+V    +P     G
Sbjct: 68  LRRAAQVHGDGWRLAGATLAVTLEPC------TMCAGALVLARVDRLVFGAWEPKTGAVG 121

Query: 114 RGLQ-----WLSQKGIIVDRMMESEGKIFLHAYLTRQ 145
                     L+ +  +   ++E+E    L  +    
Sbjct: 122 SLWDVVRDRRLNHRPEVRGGVLETECAALLDTFFRTH 158


>gi|83815475|ref|YP_446616.1| putative cytidine and deoxycytidylate deaminase [Salinibacter ruber
           DSM 13855]
 gi|83756869|gb|ABC44982.1| putative cytidine and deoxycytidylate deaminase [Salinibacter ruber
           DSM 13855]
          Length = 221

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 45/121 (37%), Gaps = 23/121 (19%)

Query: 1   MPVS--SFD-ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVI-----GRGVTAYGG 51
           MP S  + D  RF+ AA+  +       + NP    ++V   G V+       G T    
Sbjct: 64  MPDSVDALDHERFVRAAIDEA--GSAQDAGNPPFGAVLVGPGGTVLDRAGNTEGRTGDC- 120

Query: 52  CPHAEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
             HAE   +  A      E    AT Y + EPC+       CA  I    I RVV  +  
Sbjct: 121 TGHAETNLVRAASQEYDPERLAKATLYASTEPCAM------CAGAIFWARIGRVVFGLRA 174

Query: 107 P 107
            
Sbjct: 175 E 175


>gi|302914924|ref|XP_003051273.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732211|gb|EEU45560.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 431

 Score = 53.0 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 53/166 (31%), Gaps = 42/166 (25%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT---------AYGGCP-- 53
           +D  FM  A   +            V C++V K+  VI  G           A GGCP  
Sbjct: 230 WDTYFMELA-SLAAQRSNCMKR--RVGCVLVGKERRVISTGYNGTPRGLLNCAEGGCPRC 286

Query: 54  ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                           HAE  AL EAG E    G+  Y    PC        C+  I + 
Sbjct: 287 NDASSSGVGLSTCLCIHAEENALLEAGRERIREGSVLYCDTCPCL------TCSIKICQV 340

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
           GI  VV         +     +   + G+ + + + +        +
Sbjct: 341 GISEVVYAHGYS---MDNETARVFREAGVKLRQFIPTRLIPSYWRF 383


>gi|312141603|ref|YP_004008939.1| cmp/dcmp deaminase [Rhodococcus equi 103S]
 gi|311890942|emb|CBH50261.1| CMP/dCMP deaminase [Rhodococcus equi 103S]
          Length = 156

 Score = 53.0 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 38/102 (37%), Gaps = 17/102 (16%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA-- 63
           F+   +  +R +V  T      A +IVKDG V+               HAE+ A+ +A  
Sbjct: 3   FVQRTIDLARQNV--TEGGRPFAAVIVKDGEVLAESPNRVAQTGDPTAHAEILAISQACT 60

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
               E   G T YV   PC      P C   +  C    VV 
Sbjct: 61  ELGTEHLTGTTIYVLAHPC------PMCLGSLYYCSPDEVVF 96


>gi|212635213|ref|YP_002311738.1| dihydrofolate reductase [Shewanella piezotolerans WP3]
 gi|212556697|gb|ACJ29151.1| Dihydrofolate reductase, putative [Shewanella piezotolerans WP3]
          Length = 186

 Score = 53.0 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           +L  L+  L   G     ++GGA    SF+N +L++ II+ R+ +++GEG
Sbjct: 104 ELTALIAKLESEGHQHAYIDGGAT-IQSFLNLKLINEIIITRAPVILGEG 152


>gi|146329465|ref|YP_001209489.1| adenosine deaminase [Dichelobacter nodosus VCS1703A]
 gi|146232935|gb|ABQ13913.1| adenosine deaminase [Dichelobacter nodosus VCS1703A]
          Length = 157

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 48/153 (31%), Gaps = 23/153 (15%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
           D  FM  AL  ++    +      +  ++V    VI               H+E+  L E
Sbjct: 3   DVDFMRLALEQAQLAAEI--GEIPIGAVLVYQQQVIAANFNRTISACDPSAHSEILVLRE 60

Query: 63  AGEEARGA-----TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
             +  +         YVT+EPC        C   +I   I ++V    +      G    
Sbjct: 61  GAQRIKNYRLTEMALYVTVEPC------VMCVGALIHARIEKLVFGAYNARGGACGSSFD 114

Query: 118 WLSQK------GIIVDRMMESEGKIFLHAYLTR 144
                        +   ++ +E ++ L  +  +
Sbjct: 115 LTRHAQLNHHINEVKGGVLAAECQLLLQQFFQK 147


>gi|312866406|ref|ZP_07726624.1| putative ComE operon protein 2 [Streptococcus downei F0415]
 gi|311098100|gb|EFQ56326.1| putative ComE operon protein 2 [Streptococcus downei F0415]
          Length = 151

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 34/143 (23%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------------- 53
            FM+ A   S+     T     V  ++VKD  +I  G                       
Sbjct: 11  YFMANAELISKRS---TCDRAYVGAVLVKDKRIIATGYNGGVSETDNCNEVGHYMEDGHC 67

Query: 54  ----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               HAE+ AL +    G   +    YVT  PC +      C + +++ GI+++    D 
Sbjct: 68  IRTVHAEMNALIQCAKEGISTKNTEIYVTHFPCIN------CTKALLQAGIKKITYKADY 121

Query: 107 PDVRVSGRGLQWLSQKGIIVDRM 129
              R +   ++ + QKG+   + 
Sbjct: 122 ---RPNALAIELMEQKGVDYIQH 141


>gi|144897625|emb|CAM74489.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 146

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 44/129 (34%), Gaps = 24/129 (18%)

Query: 30  SVACLIVKDGIVIG------RGVTAYGGCPHAEVQALEEAG-----EEARGATAYVTLEP 78
            V  ++V+ G VI         +       HAE+Q +  A              YVTLEP
Sbjct: 22  PVGAVLVRAGQVIAADGNRVEELHDP--TAHAEMQVIRAAATRLGQTRLEECDLYVTLEP 79

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESE 133
           C      P CA  I    +RR+     DP       G +         +  IV  + E+E
Sbjct: 80  C------PMCAAAIAHARLRRLYYGAYDPKGGGVEHGARVFERSTCHHRPEIVGGLREAE 133

Query: 134 GKIFLHAYL 142
               L  + 
Sbjct: 134 NAALLQDFF 142


>gi|332293298|ref|YP_004431907.1| CMP/dCMP deaminase zinc-binding protein [Krokinobacter diaphorus
          4H-3-7-5]
 gi|332171384|gb|AEE20639.1| CMP/dCMP deaminase zinc-binding protein [Krokinobacter diaphorus
          4H-3-7-5]
          Length = 147

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 10/90 (11%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA-- 63
          FM  A+  +R     T    +   +IV+ G VI       GG      HAE++ ++ A  
Sbjct: 7  FMKQAIALAREGK-DTDGGGAFGAVIVRSGQVIAACHNLVGGSQDPTQHAELRCIQLACK 65

Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQ 90
              ++      Y +  PC     +   A+
Sbjct: 66 ALGTKDLSDCDLYTSCVPCMMCLGAARWAR 95


>gi|299532967|ref|ZP_07046354.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
           S44]
 gi|298719191|gb|EFI60161.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
           S44]
          Length = 166

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRG--VTAYGG--CPHAEV 57
           ++  D  ++  A+  +         N     LIV  DG V+ R        G    HAE+
Sbjct: 9   LNDADGCYLREAIALADTARER--GNRPFGALIVAADGRVLARASNANGESGDCTAHAEL 66

Query: 58  QALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            A+  A      +E   AT Y + EPC        CA  I    I RVV  +D   +RV 
Sbjct: 67  SAIRLASPLHSRDELAVATLYSSAEPC------VMCAGAIFWSAIGRVVYGIDAERLRVF 120

Query: 113 GRGLQWLSQKGIIVDRMMESEGKI 136
                      +    + ++    
Sbjct: 121 RGERLDQKDAELSCRDVFQTASHA 144


>gi|198276422|ref|ZP_03208953.1| hypothetical protein BACPLE_02617 [Bacteroides plebeius DSM 17135]
 gi|198270864|gb|EDY95134.1| hypothetical protein BACPLE_02617 [Bacteroides plebeius DSM 17135]
          Length = 240

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 11/145 (7%)

Query: 221 RIILDPHFKLSLDSKIIK-TALLAPVI-IVTENDDPVLALAFRKKNINIIYC--DCRDLK 276
            + +D   +L   S ++      A V+ ++            R+  I+ +    D  D  
Sbjct: 82  YVSVDFSGRLGWKSHVLTYEDTTAEVVEVLGAGASNAYKAFLRRLGISYVIAGEDKLDYG 141

Query: 277 KLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE----- 330
            LLT L    G+ +L++ GG  +  SFI +   D + +  +    G     +        
Sbjct: 142 LLLTKLKALFGIETLMLGGGGVLNWSFIQAGYCDEVSILMAPAADGSRDTQTLFMTKEGL 201

Query: 331 EGYLEKNFMCVRRDYFGSD-VCLEY 354
                + F  +     GS  V L Y
Sbjct: 202 TADAAQGFRLIDVKALGSGTVWLRY 226


>gi|145223166|ref|YP_001133844.1| CMP/dCMP deaminase, zinc-binding [Mycobacterium gilvum PYR-GCK]
 gi|145215652|gb|ABP45056.1| CMP/dCMP deaminase, zinc-binding protein [Mycobacterium gilvum
           PYR-GCK]
          Length = 146

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 17/134 (12%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEE--A 67
           A+  +R  +      P  A L   DG ++G G            HAE  A   AG +   
Sbjct: 10  AVEEARKGLAE-GGIPIGAALFAADGTLLGSGHNRRVQLDDPSLHAETDAFRNAGRQRGY 68

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           R  T   TL PC +      C+  + +  I  VV+     + R    G  WL++ G+ V 
Sbjct: 69  RSTTMVTTLSPCWY------CSGLVRQFNIGTVVIG----ESRTFTGGHDWLAEHGVKVT 118

Query: 128 RMMESEGKIFLHAY 141
            + +      +  +
Sbjct: 119 VVDDERCVTLMRDF 132


>gi|323144363|ref|ZP_08078972.1| hypothetical protein HMPREF9444_01634 [Succinatimonas hippei YIT
           12066]
 gi|322415865|gb|EFY06590.1| hypothetical protein HMPREF9444_01634 [Succinatimonas hippei YIT
           12066]
          Length = 230

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 12/142 (8%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLL 279
           I+ D   KL   + ++  +    V +V+ N         ++  ++ I+       + +++
Sbjct: 81  IVFDLKGKLHYKTCLL-PSGEHIVAVVSPNVKSEYLDELKQVGVSYIFAKDGYEAIAEVI 139

Query: 280 TILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-- 336
             L     V +LL+EGG AV  SF+ ++L++   +     V G  GI S +     +K  
Sbjct: 140 RDLEKYFAVKNLLLEGGGAVNGSFLKAKLINEFSILVYPSVDGMSGIDSIVNYQGEDKSD 199

Query: 337 ------NFMCVRRDYFGSDVCL 352
                     +  + F  DV L
Sbjct: 200 IPGKGAQLHLLTCEKFSGDVVL 221


>gi|29654671|ref|NP_820363.1| cytidine/deoxycytidylate deaminase family protein [Coxiella
           burnetii RSA 493]
 gi|153209491|ref|ZP_01947406.1| cytidine/deoxycytidylate deaminase family protein [Coxiella
           burnetii 'MSU Goat Q177']
 gi|154706754|ref|YP_001424808.1| hypothetical protein CBUD_1461 [Coxiella burnetii Dugway 5J108-111]
 gi|161830445|ref|YP_001597217.1| cytidine/deoxycytidylate deaminase family protein [Coxiella
           burnetii RSA 331]
 gi|165923928|ref|ZP_02219760.1| cytidine/deoxycytidylate deaminase family protein [Coxiella
           burnetii RSA 334]
 gi|212212253|ref|YP_002303189.1| cytidine/deoxycytidylate deaminase family protein [Coxiella
           burnetii CbuG_Q212]
 gi|212218777|ref|YP_002305564.1| cytidine/deoxycytidylate deaminase family protein [Coxiella
           burnetii CbuK_Q154]
 gi|29541939|gb|AAO90877.1| cytidine/deoxycytidylate deaminase family protein [Coxiella
           burnetii RSA 493]
 gi|120575344|gb|EAX31968.1| cytidine/deoxycytidylate deaminase family protein [Coxiella
           burnetii 'MSU Goat Q177']
 gi|154356040|gb|ABS77502.1| hypothetical protein CBUD_1461 [Coxiella burnetii Dugway 5J108-111]
 gi|161762312|gb|ABX77954.1| cytidine/deoxycytidylate deaminase family protein [Coxiella
           burnetii RSA 331]
 gi|165916620|gb|EDR35224.1| cytidine/deoxycytidylate deaminase family protein [Coxiella
           burnetii RSA 334]
 gi|212010663|gb|ACJ18044.1| cytidine/deoxycytidylate deaminase family protein [Coxiella
           burnetii CbuG_Q212]
 gi|212013039|gb|ACJ20419.1| cytidine/deoxycytidylate deaminase family protein [Coxiella
           burnetii CbuK_Q154]
          Length = 159

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 16/116 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
           + D +F+       +  +      P    LIV+D  +I +GV    T+     H+E+ A+
Sbjct: 4   NNDKQFLHEVFDLVKNSISHNLGGP-FGALIVRDSKIIAKGVNRVTTSNDPTAHSEIVAI 62

Query: 61  EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
            EA ++       G   YV  EPC      P C        I +++  +   D   
Sbjct: 63  REACQKLNTFNLTGCYLYVNCEPC------PMCLGACYWARIDKIIFSLTKKDAEN 112


>gi|255326091|ref|ZP_05367178.1| tRNA-specific adenosine deaminase [Rothia mucilaginosa ATCC 25296]
 gi|255296802|gb|EET76132.1| tRNA-specific adenosine deaminase [Rothia mucilaginosa ATCC 25296]
          Length = 158

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 41/128 (32%), Gaps = 21/128 (16%)

Query: 30  SVACLIVKD-GIVIGRGVT----AYGGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
            +  ++V + G +IG         +    HAEV A+ +A          G T  VT+EPC
Sbjct: 32  PIGAVVVDEQGAIIGSAGNTREREHDPSAHAEVNAIRQAAAHRGQWRLDGCTLVVTVEPC 91

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEG 134
                +      I+   +  VV    +     +G     L          +   +   E 
Sbjct: 92  LMCAGT------ILASRVSTVVFGAWEEKTGAAGSRYDVLRDGRVAPAPEVYAGVRADEC 145

Query: 135 KIFLHAYL 142
              +  + 
Sbjct: 146 AQLMVDFF 153


>gi|116873939|ref|YP_850720.1| reductase family protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742817|emb|CAK21941.1| reductase family protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 174

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           + + GGA +   F+  + +D  ++  + I++G+G    PL E   E          FG  
Sbjct: 107 IWLVGGAKLVKQFLKEKAIDRFVITIAPIILGKG---IPLFEEDQEHKLELEEVTRFGQF 163

Query: 350 VCLEY 354
             L Y
Sbjct: 164 AQLTY 168


>gi|55821713|ref|YP_140155.1| late competence protein required for DNA binding and uptake
           [Streptococcus thermophilus LMG 18311]
 gi|55823633|ref|YP_142074.1| late competence protein required for DNA binding and uptake
           [Streptococcus thermophilus CNRZ1066]
 gi|55737698|gb|AAV61340.1| late competence protein required for DNA binding and uptake
           [Streptococcus thermophilus LMG 18311]
 gi|55739618|gb|AAV63259.1| late competence protein required for DNA binding and uptake
           [Streptococcus thermophilus CNRZ1066]
          Length = 156

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 50/149 (33%), Gaps = 34/149 (22%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----------------- 51
            FM+ A   S+     T     V  ++VKD  +I  G                       
Sbjct: 15  YFMANAELISKRS---TCDRAFVGAVLVKDKRIIATGYNGGVSEADNCNEVGHYMEDGHC 71

Query: 52  --CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               HAE+ AL +    G   +    YVT  PC +      C + +++ G   VV     
Sbjct: 72  IRTVHAEMNALIQCAKEGISTKNTEIYVTHFPCIN------CTKALLQAG---VVKITYK 122

Query: 107 PDVRVSGRGLQWLSQKGIIVDRMMESEGK 135
            + R     ++ + QKG+   +    E  
Sbjct: 123 ANYRPHAFAIELMEQKGVSYVQHDVPEVH 151


>gi|270291422|ref|ZP_06197644.1| ComE operon protein 2 [Pediococcus acidilactici 7_4]
 gi|270280268|gb|EFA26104.1| ComE operon protein 2 [Pediococcus acidilactici 7_4]
          Length = 160

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 34/97 (35%), Gaps = 25/97 (25%)

Query: 5  SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           +D  FM+ AL  S      T    SV  +IV+D  VI  G                   
Sbjct: 6  DWDQYFMTQALLLSLRS---TCKRLSVGAIIVRDRRVIAGGYNGSVSGDVHCLDEGCYLV 62

Query: 54 --------HAEVQALEEA---GEEARGATAYVTLEPC 79
                  HAE+ A+ +    G    GA  YVT  PC
Sbjct: 63 DGHCVRTIHAEMNAVLQCSKFGVATDGAEIYVTDFPC 99


>gi|255606197|ref|XP_002538521.1| conserved hypothetical protein [Ricinus communis]
 gi|223511748|gb|EEF23863.1| conserved hypothetical protein [Ricinus communis]
          Length = 176

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 10/86 (11%)

Query: 274 DLKKLLTILVG--RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           DL+  +  L     GV  +   GG  +A S     L+D   +Y   +V+GEG   SP   
Sbjct: 97  DLETAVRALKESHEGVIEV---GGPDLARSLSALGLIDEYRIYLHPVVLGEG---SPFFA 150

Query: 332 GYLEKNFMCVRRDYFGSDVC-LEYIG 356
           G+  K    V     G +V  L Y+ 
Sbjct: 151 GFRPK-LRLVDSTRIGDEVVRLTYVP 175


>gi|163800337|ref|ZP_02194238.1| deoxycytidylate deaminase [Vibrio sp. AND4]
 gi|159175780|gb|EDP60574.1| deoxycytidylate deaminase [Vibrio sp. AND4]
          Length = 152

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 52/156 (33%), Gaps = 31/156 (19%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------- 53
           +S ++ RF   A   + W       +  V  +I K   ++  G   Y             
Sbjct: 2   ISKWEKRFYQMAELVASWSK---DPSTQVGAVITKQNRIVSVGFNGYPHGVSDSVDTDER 58

Query: 54  --------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                   HAE  A+  +  +  G   +VT  PC      P CA  II+ GI RV   V 
Sbjct: 59  ELKYLKTLHAEENAILFSKRDLDGCEIWVTHFPC------PNCAAKIIQTGISRVSCPVQ 112

Query: 106 DPDVRVS-----GRGLQWLSQKGIIVDRMMESEGKI 136
             D                +Q G+ V+ +   + + 
Sbjct: 113 SDDFLSRWGDKIQVSQDMFAQAGVEVNWLPIEQMEE 148


>gi|293335013|ref|NP_001169897.1| hypothetical protein LOC100383791 [Zea mays]
 gi|224032231|gb|ACN35191.1| unknown [Zea mays]
          Length = 180

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 38/117 (32%), Gaps = 18/117 (15%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK---DGIVIGRGVTA----YGGCPHAEVQALE 61
           R ++ A+  +   V           ++V    D  V+     +         HAEV A+ 
Sbjct: 24  RLIAKAVDEAYRAVECDGGGYPFGAVVVHGGGDDEVVSSSHNSVRKDADPSAHAEVTAIR 83

Query: 62  EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           +A          G   Y + EPC      P C   I    I++VV          +G
Sbjct: 84  QACKKLGKTSLAGCEIYTSCEPC------PMCLGLIRLAKIKKVVYGAKSEVAAAAG 134


>gi|195977496|ref|YP_002122740.1| dCMP deaminase; late competence protein ComEB [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|195974201|gb|ACG61727.1| dCMP deaminase; late competence protein ComEB [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 153

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 47/145 (32%), Gaps = 32/145 (22%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY---------GG-------- 51
            FM+ A   S+     T     V  ++VKD  +I  G              G        
Sbjct: 10  YFMANAELISKRS---TCDRAFVGAVLVKDNRIIATGYNGGVSATDNCNEAGHYMEEGHC 66

Query: 52  --CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               HAE+ AL +    G    G   YVT  PC +      C + +++ GI ++      
Sbjct: 67  IRTVHAEMNALIQCAKEGISTAGTEIYVTHFPCIN------CTKALLQAGICKITYKSHY 120

Query: 107 PDVRVSGRGLQWLSQKGIIVDRMME 131
                +   +      G +   + +
Sbjct: 121 RPHPFAIELMDK-KGVGYVQHDVPQ 144


>gi|304385135|ref|ZP_07367481.1| ComE operon protein 2 [Pediococcus acidilactici DSM 20284]
 gi|304329329|gb|EFL96549.1| ComE operon protein 2 [Pediococcus acidilactici DSM 20284]
          Length = 163

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 34/97 (35%), Gaps = 25/97 (25%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
            +D  FM+ AL  S      T    SV  +IV+D  VI  G                   
Sbjct: 9   DWDQYFMTQALLLSLRS---TCKRLSVGAIIVRDRRVIAGGYNGSVSGDVHCLDEGCYLV 65

Query: 54  --------HAEVQALEEA---GEEARGATAYVTLEPC 79
                   HAE+ A+ +    G    GA  YVT  PC
Sbjct: 66  DGHCVRTIHAEMNAVLQCSKFGVATDGAEIYVTDFPC 102


>gi|301165871|emb|CBW25444.1| putative deaminase [Bacteriovorax marinus SJ]
          Length = 158

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 48/161 (29%), Gaps = 36/161 (22%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT---------------------- 47
           M  A+  S         +  V  + V K+   +  G                        
Sbjct: 1   MLQAMMASFKSK---DPSTKVGAVFVDKNNHQVTMGYNGFVAGIDETKLPWGKDPKAPLE 57

Query: 48  -AYGG-CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
               G   HAE  A+  A +   G  AYVTL PC        CA+ +    +  VV   D
Sbjct: 58  YQKYGYVVHAEANAILHAKDSLEGTRAYVTLFPCHE------CAKLLASSKVCEVVYLSD 111

Query: 106 -DPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQ 145
              +   +    +     GI   ++ E +  I    +   Q
Sbjct: 112 KHCETESNRISKKIFELAGIEYRQL-EIQDTIVNSMHQHFQ 151


>gi|328465174|gb|EGF36442.1| Chain A, Dihydrofolate Reductase [Listeria monocytogenes 1816]
          Length = 174

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           + + GGA +   F+  + +D  ++  + I++G+G    PL E   E          FG  
Sbjct: 107 IWLVGGAKLVQQFLKEKAIDRFVITIAPIILGKG---IPLFEEDREHALELEEVTRFGQF 163

Query: 350 VCLEY 354
             L Y
Sbjct: 164 AQLTY 168


>gi|313606659|gb|EFR83417.1| riboflavin biosynthesis protein RibD C- domain protein [Listeria
           monocytogenes FSL F2-208]
          Length = 175

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           + + GGA +   F+  + +D  ++  + I++G+G    PL E   E          FG  
Sbjct: 108 IWLVGGAKLVQQFLKEKAIDRFVITIAPIILGKG---IPLFEEDREHALELEEVTRFGQF 164

Query: 350 VCLEY 354
             L Y
Sbjct: 165 AQLTY 169


>gi|284031454|ref|YP_003381385.1| CMP/dCMP deaminase zinc-binding protein [Kribbella flavida DSM
           17836]
 gi|283810747|gb|ADB32586.1| CMP/dCMP deaminase zinc-binding protein [Kribbella flavida DSM
           17836]
          Length = 143

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 39/110 (35%), Gaps = 18/110 (16%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGR----GVTAYGGCPHAE-- 56
           ++ D  F+  A+  +       S NP    L+   DG V+       VT      H E  
Sbjct: 3   TTADEGFLRRAIELA--ATADKSGNPPFGSLLAGPDGTVLAEDHNTSVTDNDITAHPELK 60

Query: 57  --VQALEEAGEE-ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
               A      + A G T Y + +PC        C+  +   G+ RVV  
Sbjct: 61  LARWAAANLTPDVAAGTTMYTSCQPC------RMCSGALERSGLGRVVYA 104


>gi|46908744|ref|YP_015133.1| hypothetical protein LMOf2365_2545 [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47093580|ref|ZP_00231339.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
           H7858]
 gi|217963323|ref|YP_002349001.1| riboflavin biosynthesis protein RibD C- domain protein [Listeria
           monocytogenes HCC23]
 gi|226225119|ref|YP_002759226.1| Chain A, Dihydrofolate Reductase [Listeria monocytogenes Clip81459]
 gi|254826328|ref|ZP_05231329.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|254854398|ref|ZP_05243746.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|254932185|ref|ZP_05265544.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|254993354|ref|ZP_05275544.1| Chain A, Dihydrofolate Reductase [Listeria monocytogenes FSL
           J2-064]
 gi|255519916|ref|ZP_05387153.1| Chain A, Dihydrofolate Reductase [Listeria monocytogenes FSL
           J1-175]
 gi|300766071|ref|ZP_07076039.1| hypothetical protein LMHG_12616 [Listeria monocytogenes FSL N1-017]
 gi|46882016|gb|AAT05310.1| conserved hypothetical protein [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47018051|gb|EAL08825.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
           H7858]
 gi|217332593|gb|ACK38387.1| riboflavin biosynthesis protein RibD C- domain protein [Listeria
           monocytogenes HCC23]
 gi|225877581|emb|CAS06295.1| Putative Chain A, Dihydrofolate Reductase [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258607797|gb|EEW20405.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|293583742|gb|EFF95774.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|293595569|gb|EFG03330.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|300513217|gb|EFK40296.1| hypothetical protein LMHG_12616 [Listeria monocytogenes FSL N1-017]
 gi|307572099|emb|CAR85278.1| dihydrofolate reductase, putative [Listeria monocytogenes L99]
 gi|328469832|gb|EGF40745.1| Chain A, Dihydrofolate Reductase [Listeria monocytogenes 220]
 gi|332313002|gb|EGJ26097.1| Riboflavin biosynthesis protein [Listeria monocytogenes str. Scott
           A]
          Length = 174

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           + + GGA +   F+  + +D  ++  + I++G+G    PL E   E          FG  
Sbjct: 107 IWLVGGAKLVQQFLKEKAIDRFVITIAPIILGKG---IPLFEEDREHALELEEVTRFGQF 163

Query: 350 VCLEY 354
             L Y
Sbjct: 164 AQLTY 168


>gi|323333035|gb|EGA74437.1| Tad2p [Saccharomyces cerevisiae AWRI796]
          Length = 244

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 66/196 (33%), Gaps = 36/196 (18%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYG----GCPHAEVQALEE-- 62
           M  A+R +R+ +    T   VAC+ V    G V+  G+        G  HAE   +++  
Sbjct: 1   MRTAVRLARYALDHDET--PVACIFVHTPTGQVMAYGMNDTNKSLTGVAHAEFMGIDQIK 58

Query: 63  AGEEARGA-------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP-------- 107
           A   +RG        T YVT+EPC        CA  + + GI +VV    +         
Sbjct: 59  AMLGSRGVVDVFKDITLYVTVEPCIM------CASALKQLGIGKVVFGCGNERFGGNGTV 112

Query: 108 ---DVRVSGRGLQWLSQKGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163
              +        +  S  G   +  ++  E  + L  +  RQ E+      K     D  
Sbjct: 113 LSVNHDTCTLVPKNNSAAGYESIPGILRKEAIMLLRYFYVRQNERAPKPRSKSDRVLD-K 171

Query: 164 IGMAGCGSVPITGFIS 179
                          +
Sbjct: 172 NTFPPMEWSKYLNEEA 187


>gi|323308420|gb|EGA61665.1| Tad2p [Saccharomyces cerevisiae FostersO]
 gi|323354467|gb|EGA86306.1| Tad2p [Saccharomyces cerevisiae VL3]
          Length = 244

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 66/196 (33%), Gaps = 36/196 (18%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYG----GCPHAEVQALEE-- 62
           M  A+R +R+ +    T   VAC+ V    G V+  G+        G  HAE   +++  
Sbjct: 1   MRTAVRLARYALDHDET--PVACIFVHTPTGQVMAYGMNDTNKSLTGVAHAEFMGIDQIK 58

Query: 63  AGEEARGA-------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP-------- 107
           A   +RG        T YVT+EPC        CA  + + GI +VV    +         
Sbjct: 59  AMLGSRGVVDVFKDITLYVTVEPCIM------CASALKQLGIGKVVFGCGNERFGGNGTV 112

Query: 108 ---DVRVSGRGLQWLSQKGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163
              +        +  S  G   +  ++  E  + L  +  RQ E+      K     D  
Sbjct: 113 LSVNHDTCTLVPKNNSAAGYESIPGILRKEAIMLLRYFYVRQNERAPKPRSKSDRVLD-K 171

Query: 164 IGMAGCGSVPITGFIS 179
                          +
Sbjct: 172 NTFPPMEWSKYLNEEA 187


>gi|315283757|ref|ZP_07871843.1| riboflavin biosynthesis protein RibD C- domain protein [Listeria
           marthii FSL S4-120]
 gi|313612600|gb|EFR86656.1| riboflavin biosynthesis protein RibD C- domain protein [Listeria
           marthii FSL S4-120]
          Length = 174

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           + + GGA +   F+  + +D  ++  + I++G+G    PL E   E          FG  
Sbjct: 107 IWLVGGAQLVKQFLKEKAIDRFVITIAPIILGKG---IPLFEKDGEHALELEEVTRFGQF 163

Query: 350 VCLEYI 355
             L Y 
Sbjct: 164 AQLTYR 169


>gi|262274059|ref|ZP_06051871.1| deoxycytidylate deaminase [Grimontia hollisae CIP 101886]
 gi|262221869|gb|EEY73182.1| deoxycytidylate deaminase [Grimontia hollisae CIP 101886]
          Length = 152

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 40/132 (30%), Gaps = 28/132 (21%)

Query: 31  VACLIVKDGIVIGRGVTAYGG-----------------CPHAEVQALEEAGEEARGATAY 73
           V  +I K   ++  G   Y                     HAE  A+  A  +      +
Sbjct: 27  VGAVITKGNRIVSVGFNGYPHGISDSAETDGREMKLLKTLHAEENAILFAKRDLLDCEIW 86

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS-----GRGLQWLSQKGIIVDR 128
           VT  PC      P CA  II+ GI +V       D            +    Q G+ ++ 
Sbjct: 87  VTHFPC------PNCAAKIIQTGISQVHCPEQSEDFLSRWGDKIQVSVDMFEQAGVKINW 140

Query: 129 MMESEGKIFLHA 140
           +   E K     
Sbjct: 141 LPLDELKNCKAH 152


>gi|195110631|ref|XP_001999883.1| GI24773 [Drosophila mojavensis]
 gi|193916477|gb|EDW15344.1| GI24773 [Drosophila mojavensis]
          Length = 160

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 27/166 (16%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE- 62
           A FM  AL  +R      +    V C+ V +  VI RG            HAE   ++  
Sbjct: 2   AAFMEEALVEARRAR--DAGEVPVGCVFVHNDKVIARGGNEVNVHRNATRHAEFICIDAT 59

Query: 63  ----------AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
                     A +     +  VT+EPC        C+  +    ++ ++   ++ D    
Sbjct: 60  LAYCREKRLPARQVFSEISVVVTVEPCIM------CSAALHTLAVKEIIYGCEN-DRFGG 112

Query: 113 GRGLQWLSQKG---IIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
              +   +  G    I   +   E    L  +   +      +  K
Sbjct: 113 KTVIDVAAVVGQQINITGGVRADEAMALLKDFYKGENPAAPPVAKK 158


>gi|15639266|ref|NP_218715.1| deoxycytidylate deaminase, putative [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025508|ref|YP_001933280.1| deoxycytidylate deaminase [Treponema pallidum subsp. pallidum SS14]
 gi|3322548|gb|AAC65262.1| deoxycytidylate deaminase, putative [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018083|gb|ACD70701.1| possible deoxycytidylate deaminase [Treponema pallidum subsp.
           pallidum SS14]
 gi|291059676|gb|ADD72411.1| dCMP deaminase [Treponema pallidum subsp. pallidum str. Chicago]
          Length = 166

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 55/161 (34%), Gaps = 49/161 (30%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           S+D  FM      ++     T       C+I +D  ++  G     G P           
Sbjct: 12  SWDEYFMEVCHAIAKRA---TCDRGRAGCVIARDHHLLVTGY---AGAPRGLLHCDEHGH 65

Query: 54  --------------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE  AL +A   G    GAT Y T+ PC        CA 
Sbjct: 66  QLRTVQHEDGTCTQHCVRTVHAEQNALCQAARLGIGLEGATLYCTMTPC------RTCAM 119

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
            II CGI RVV    +   + +   +   +Q  I ++ + +
Sbjct: 120 LIINCGIVRVVA---EKRYQTATESIMLFAQAQIALEHIYQ 157


>gi|307700388|ref|ZP_07637427.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Mobiluncus mulieris FB024-16]
 gi|307614373|gb|EFN93603.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Mobiluncus mulieris FB024-16]
          Length = 174

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 47/131 (35%), Gaps = 19/131 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY-----GGCPHA 55
            +S  + R +  A   +       S +  V  +++   GIV G G+            HA
Sbjct: 5   SLSVAEQRALDTAFDLAARAA--VSGDVPVGAVLLTAQGIVTGLGLNQREIPPHDPTAHA 62

Query: 56  EVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+ EA    R     G T  VTLEPC        CA  I+   I R++    D    
Sbjct: 63  EIVAMREAAGRLRTWNLAGCTLVVTLEPC------TMCAGAIVTARISRLIFGAWDSKAG 116

Query: 111 VSGRGLQWLSQ 121
             G     +  
Sbjct: 117 ACGSIRDVVRD 127


>gi|123967659|ref|YP_001008517.1| RibD/RibG domain-containing protein [Prochlorococcus marinus str.
           AS9601]
 gi|123197769|gb|ABM69410.1| RibD/ribG C-terminal domain-containing protein [Prochlorococcus
           marinus str. AS9601]
          Length = 216

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 61/168 (36%), Gaps = 12/168 (7%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
                + + IA S D  I     G   +     K  ++   ++ DA + G+GT++A    
Sbjct: 1   MSIPRVIIVIASSLDGRIAFPRGGESHLGSEEDKKMLNQHLSKVDATIFGLGTLIAHQST 60

Query: 207 LTCR------LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
              +         + +  P+ I+       + +    +  +   +I    +   V   + 
Sbjct: 61  YLIKNLNDNDEVHISKRQPISIVASNSKNFNSNWIYFRQPIRRWLI----SSSKVDNSSN 116

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
                 + + D     K L  L   G+ +L + GGA + +SFI   L+
Sbjct: 117 NDFEKQLFFKDS--WGKTLISLKKLGINNLALLGGAKLINSFIKEDLI 162


>gi|260432946|ref|ZP_05786917.1| tRNA-specific adenosine deaminase [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416774|gb|EEX10033.1| tRNA-specific adenosine deaminase [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 156

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 44/122 (36%), Gaps = 18/122 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIG----RGVTAYGGCPHAEVQALEEA- 63
            M  AL  +R   G     P V  +IV  DG +I     R    +    HAE+ AL  A 
Sbjct: 6   HMDKALEQAR-AAGDRGEVP-VGAVIVSPDGRIIAADGNRTRELHDPTAHAEILALRAAC 63

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                E   G   YVTLEPC+    +           IRR+     DP       G +  
Sbjct: 64  RAVGSERLTGHDLYVTLEPCAMCAAAL------AAARIRRIYYGAADPKSGGVAHGARVF 117

Query: 120 SQ 121
           S 
Sbjct: 118 SH 119


>gi|257087478|ref|ZP_05581839.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis D6]
 gi|307277118|ref|ZP_07558222.1| ComE operon protein 2 [Enterococcus faecalis TX2134]
 gi|256995508|gb|EEU82810.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis D6]
 gi|306506048|gb|EFM75214.1| ComE operon protein 2 [Enterococcus faecalis TX2134]
 gi|315025365|gb|EFT37297.1| ComE operon protein 2 [Enterococcus faecalis TX2137]
          Length = 167

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 51/140 (36%), Gaps = 31/140 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M    +D  FM  ++  S      T T  +V   IV+D  +I  G      GG       
Sbjct: 1   MERIPWDQYFMGQSVLLSLRS---TCTRLTVGATIVRDKRIIAGGYNGSVSGGTHCIDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A+ +    G    GA  YVT  PC        C + I++ GI+
Sbjct: 58  CYVVDNHCVRTIHAEMNAILQCAKFGVPTEGAEIYVTHFPCLQ------CTKMILQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQW 118
           ++    D  +   +   ++ 
Sbjct: 112 KIYYLKDYRNDAYALNLIEQ 131


>gi|183984819|ref|YP_001853110.1| deaminase [Mycobacterium marinum M]
 gi|183178145|gb|ACC43255.1| deaminase [Mycobacterium marinum M]
          Length = 166

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 11/82 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA-- 63
          F   A+  +R +V         A +IVKDG V+               HAE+ A+  A  
Sbjct: 4  FAQRAIDLARQNVAEGGR--PFATVIVKDGQVLAESANKVAQTNDPTAHAEILAIRAACT 61

Query: 64 ---GEEARGATAYVTLEPCSHY 82
              E+  G T YV   PC   
Sbjct: 62 KLGTEQLFGTTFYVLAHPCPMC 83


>gi|227529916|ref|ZP_03959965.1| bifunctional deaminase-reductase domain protein [Lactobacillus
           vaginalis ATCC 49540]
 gi|227350170|gb|EEJ40461.1| bifunctional deaminase-reductase domain protein [Lactobacillus
           vaginalis ATCC 49540]
          Length = 232

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 7/131 (5%)

Query: 225 DPHFKLSLDSKIIKTALLAP--VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLT 280
           D   +   +      A      + +VT+          +   I  + C  R  +L + L 
Sbjct: 92  DRRGRAGWEKNYFPYAGRKNRAIEVVTKQASRNYLAFLQSMEIPYLVCGEREINLAESLG 151

Query: 281 ILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE--EGYLEKN 337
            L     + ++++ GGA +  +F+ + LVD I L  +  + G+       +    ++ + 
Sbjct: 152 KLKKYFDIKTMVLGGGALINGAFLKAGLVDQISLVIAPYISGDSKKKGTFDTLGKFVNQR 211

Query: 338 FMCVRRDYFGS 348
           F   +    G 
Sbjct: 212 FHVTQTKKLGD 222


>gi|29376942|ref|NP_816096.1| comE operon protein 2, putative [Enterococcus faecalis V583]
 gi|227519834|ref|ZP_03949883.1| competence protein ComEB [Enterococcus faecalis TX0104]
 gi|227553981|ref|ZP_03984028.1| competence protein ComEB [Enterococcus faecalis HH22]
 gi|229545131|ref|ZP_04433856.1| competence protein ComEB [Enterococcus faecalis TX1322]
 gi|229549379|ref|ZP_04438104.1| competence protein ComEB [Enterococcus faecalis ATCC 29200]
 gi|255972085|ref|ZP_05422671.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T1]
 gi|255975152|ref|ZP_05425738.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T2]
 gi|256763140|ref|ZP_05503720.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T3]
 gi|256853808|ref|ZP_05559173.1| late competence protein ComEB [Enterococcus faecalis T8]
 gi|256956725|ref|ZP_05560896.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis DS5]
 gi|256961258|ref|ZP_05565429.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis Merz96]
 gi|256963615|ref|ZP_05567786.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis HIP11704]
 gi|257079679|ref|ZP_05574040.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis JH1]
 gi|257081974|ref|ZP_05576335.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis E1Sol]
 gi|257084526|ref|ZP_05578887.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis Fly1]
 gi|257090637|ref|ZP_05584998.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis CH188]
 gi|257416685|ref|ZP_05593679.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis AR01/DG]
 gi|257419901|ref|ZP_05596895.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T11]
 gi|257421911|ref|ZP_05598901.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis X98]
 gi|293383542|ref|ZP_06629452.1| ComE operon protein 2 [Enterococcus faecalis R712]
 gi|293387345|ref|ZP_06631901.1| ComE operon protein 2 [Enterococcus faecalis S613]
 gi|294780837|ref|ZP_06746192.1| ComE operon protein 2 [Enterococcus faecalis PC1.1]
 gi|300860396|ref|ZP_07106483.1| ComE operon protein 2 [Enterococcus faecalis TUSoD Ef11]
 gi|307270792|ref|ZP_07552082.1| ComE operon protein 2 [Enterococcus faecalis TX4248]
 gi|307271556|ref|ZP_07552828.1| ComE operon protein 2 [Enterococcus faecalis TX0855]
 gi|307285769|ref|ZP_07565903.1| ComE operon protein 2 [Enterococcus faecalis TX0860]
 gi|307287672|ref|ZP_07567715.1| ComE operon protein 2 [Enterococcus faecalis TX0109]
 gi|307290498|ref|ZP_07570411.1| ComE operon protein 2 [Enterococcus faecalis TX0411]
 gi|312899878|ref|ZP_07759196.1| ComE operon protein 2 [Enterococcus faecalis TX0470]
 gi|312905172|ref|ZP_07764293.1| ComE operon protein 2 [Enterococcus faecalis TX0635]
 gi|312906092|ref|ZP_07765104.1| ComE operon protein 2 [Enterococcus faecalis DAPTO 512]
 gi|312909438|ref|ZP_07768293.1| ComE operon protein 2 [Enterococcus faecalis DAPTO 516]
 gi|312953529|ref|ZP_07772367.1| ComE operon protein 2 [Enterococcus faecalis TX0102]
 gi|29344407|gb|AAO82166.1| comE operon protein 2, putative [Enterococcus faecalis V583]
 gi|227072724|gb|EEI10687.1| competence protein ComEB [Enterococcus faecalis TX0104]
 gi|227176884|gb|EEI57856.1| competence protein ComEB [Enterococcus faecalis HH22]
 gi|229305616|gb|EEN71612.1| competence protein ComEB [Enterococcus faecalis ATCC 29200]
 gi|229309676|gb|EEN75663.1| competence protein ComEB [Enterococcus faecalis TX1322]
 gi|255963103|gb|EET95579.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T1]
 gi|255968024|gb|EET98646.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T2]
 gi|256684391|gb|EEU24086.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T3]
 gi|256710751|gb|EEU25794.1| late competence protein ComEB [Enterococcus faecalis T8]
 gi|256947221|gb|EEU63853.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis DS5]
 gi|256951754|gb|EEU68386.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis Merz96]
 gi|256954111|gb|EEU70743.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis HIP11704]
 gi|256987709|gb|EEU75011.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis JH1]
 gi|256990004|gb|EEU77306.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis E1Sol]
 gi|256992556|gb|EEU79858.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis Fly1]
 gi|256999449|gb|EEU85969.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis CH188]
 gi|257158513|gb|EEU88473.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis ARO1/DG]
 gi|257161729|gb|EEU91689.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T11]
 gi|257163735|gb|EEU93695.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis X98]
 gi|291079054|gb|EFE16418.1| ComE operon protein 2 [Enterococcus faecalis R712]
 gi|291083243|gb|EFE20206.1| ComE operon protein 2 [Enterococcus faecalis S613]
 gi|294452082|gb|EFG20529.1| ComE operon protein 2 [Enterococcus faecalis PC1.1]
 gi|295113494|emb|CBL32131.1| ComE operon protein 2 [Enterococcus sp. 7L76]
 gi|300849435|gb|EFK77185.1| ComE operon protein 2 [Enterococcus faecalis TUSoD Ef11]
 gi|306498445|gb|EFM67949.1| ComE operon protein 2 [Enterococcus faecalis TX0411]
 gi|306501410|gb|EFM70713.1| ComE operon protein 2 [Enterococcus faecalis TX0109]
 gi|306502530|gb|EFM71797.1| ComE operon protein 2 [Enterococcus faecalis TX0860]
 gi|306511828|gb|EFM80826.1| ComE operon protein 2 [Enterococcus faecalis TX0855]
 gi|306512906|gb|EFM81548.1| ComE operon protein 2 [Enterococcus faecalis TX4248]
 gi|310627738|gb|EFQ11021.1| ComE operon protein 2 [Enterococcus faecalis DAPTO 512]
 gi|310628541|gb|EFQ11824.1| ComE operon protein 2 [Enterococcus faecalis TX0102]
 gi|310631562|gb|EFQ14845.1| ComE operon protein 2 [Enterococcus faecalis TX0635]
 gi|311290111|gb|EFQ68667.1| ComE operon protein 2 [Enterococcus faecalis DAPTO 516]
 gi|311292874|gb|EFQ71430.1| ComE operon protein 2 [Enterococcus faecalis TX0470]
 gi|315030173|gb|EFT42105.1| ComE operon protein 2 [Enterococcus faecalis TX4000]
 gi|315032942|gb|EFT44874.1| ComE operon protein 2 [Enterococcus faecalis TX0017]
 gi|315035754|gb|EFT47686.1| ComE operon protein 2 [Enterococcus faecalis TX0027]
 gi|315144858|gb|EFT88874.1| ComE operon protein 2 [Enterococcus faecalis TX2141]
 gi|315146725|gb|EFT90741.1| ComE operon protein 2 [Enterococcus faecalis TX4244]
 gi|315150113|gb|EFT94129.1| ComE operon protein 2 [Enterococcus faecalis TX0012]
 gi|315152019|gb|EFT96035.1| ComE operon protein 2 [Enterococcus faecalis TX0031]
 gi|315155382|gb|EFT99398.1| ComE operon protein 2 [Enterococcus faecalis TX0043]
 gi|315159042|gb|EFU03059.1| ComE operon protein 2 [Enterococcus faecalis TX0312]
 gi|315161635|gb|EFU05652.1| ComE operon protein 2 [Enterococcus faecalis TX0645]
 gi|315164895|gb|EFU08912.1| ComE operon protein 2 [Enterococcus faecalis TX1302]
 gi|315166356|gb|EFU10373.1| ComE operon protein 2 [Enterococcus faecalis TX1341]
 gi|315170253|gb|EFU14270.1| ComE operon protein 2 [Enterococcus faecalis TX1342]
 gi|315574319|gb|EFU86510.1| ComE operon protein 2 [Enterococcus faecalis TX0309B]
 gi|315579112|gb|EFU91303.1| ComE operon protein 2 [Enterococcus faecalis TX0630]
 gi|315580206|gb|EFU92397.1| ComE operon protein 2 [Enterococcus faecalis TX0309A]
 gi|323481437|gb|ADX80876.1| comE operon protein 2 [Enterococcus faecalis 62]
 gi|327535732|gb|AEA94566.1| ComE operon protein 2 [Enterococcus faecalis OG1RF]
 gi|329572337|gb|EGG53994.1| ComE operon protein 2 [Enterococcus faecalis TX1467]
          Length = 167

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 51/140 (36%), Gaps = 31/140 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M    +D  FM  ++  S      T T  +V   IV+D  +I  G      GG       
Sbjct: 1   MERIPWDQYFMGQSVLLSLRS---TCTRLTVGATIVRDKRIIAGGYNGSVSGGTHCIDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A+ +    G    GA  YVT  PC        C + I++ GI+
Sbjct: 58  CYVVDNHCVRTIHAEMNAILQCAKFGVPTEGAEIYVTHFPCLQ------CTKMILQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQW 118
           ++    D  +   +   ++ 
Sbjct: 112 KIYYLKDYRNDAYALNLIEQ 131


>gi|149200864|ref|ZP_01877839.1| hypothetical protein RTM1035_14602 [Roseovarius sp. TM1035]
 gi|149145197|gb|EDM33223.1| hypothetical protein RTM1035_14602 [Roseovarius sp. TM1035]
          Length = 153

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 39/122 (31%), Gaps = 18/122 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA- 63
           +M  AL               V  +IV   G +  R             HAE+ A+  A 
Sbjct: 6   YMDIALD--EARAAAARGEVPVGAVIVTPSGAIAARAGNRTRELSDPTAHAEILAIRAAC 63

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                E   G   YVTLEPC+       CA  I    I R+     DP       G +  
Sbjct: 64  AALGSERLPGHDLYVTLEPCAM------CASAIAATRIARLYYGAADPKSGGVAMGARVF 117

Query: 120 SQ 121
           S 
Sbjct: 118 SH 119


>gi|225869190|ref|YP_002745138.1| cytidine and deoxycytidylate deaminase [Streptococcus equi subsp.
           zooepidemicus]
 gi|225869858|ref|YP_002745805.1| cytidine and deoxycytidylate deaminase [Streptococcus equi subsp.
           equi 4047]
 gi|225699262|emb|CAW92581.1| putative cytidine and deoxycytidylate deaminase [Streptococcus equi
           subsp. equi 4047]
 gi|225702466|emb|CAX00368.1| putative cytidine and deoxycytidylate deaminase [Streptococcus equi
           subsp. zooepidemicus]
          Length = 153

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 51/147 (34%), Gaps = 34/147 (23%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY---------GG-------- 51
            FM+ A   S+     T     V  ++VKD  +I  G              G        
Sbjct: 10  YFMANAELISKRS---TCDRAFVGAVLVKDNRIIATGYNGGVSATDNCNEAGHYMEEGHC 66

Query: 52  --CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               HAE+ AL +    G    G   YVT  PC +      C + +++ GI ++      
Sbjct: 67  IRTVHAEMNALIQCAKEGISTAGTEIYVTHFPCIN------CTKALLQAGICKITY---K 117

Query: 107 PDVRVSGRGLQWLSQKGIIVDRMMESE 133
              R     ++ + +KG+   +    +
Sbjct: 118 SHYRPHPFAIELMDKKGVAYVQHDVPQ 144


>gi|134103078|ref|YP_001108739.1| bifunctional deaminase-reductase-like protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291008968|ref|ZP_06566941.1| bifunctional deaminase-reductase-like protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133915701|emb|CAM05814.1| bifunctional deaminase-reductase-like protein [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 187

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 62/206 (30%), Gaps = 45/206 (21%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQ---VHLLRAQSDAILVGIGTVLADDPELT 208
             L++ V+ D  +         +T   + +    V  L    D I++G        P   
Sbjct: 4   FKLQLQVTADGYMAGPNGEMDWMTLPWTDDMNSYVDALTEPVDRIVLGRKLAEGFIPAWA 63

Query: 209 CRLNGLQEHS-------PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
            R  G  + +       P  +I D   +   D  ++                        
Sbjct: 64  SRPEGETQETIDWMNGTPKVVISDSLTESPWDGAVVAGG--------------------- 102

Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
                       DL +++  L       L+  GGA +A   I   L+D + L+ +   IG
Sbjct: 103 ------------DLAEIVERLKAEPGGDLITYGGATLASELIARGLLDELHLFVNPTAIG 150

Query: 322 EGGIPSPLEEGYLEKNFMCVRRDYFG 347
             G+P     G   + F  V    F 
Sbjct: 151 -TGLPVFPNTGAY-QRFRLVTARPFD 174


>gi|15604662|ref|NP_221180.1| hypothetical protein RP831 [Rickettsia prowazekii str. Madrid E]
 gi|6226400|sp|Q9ZCC6|Y831_RICPR RecName: Full=Uncharacterized deaminase RP831
 gi|3861357|emb|CAA15256.1| unknown [Rickettsia prowazekii]
          Length = 148

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 21/123 (17%)

Query: 11  MSAALRFSRWHVGLTSTN-PSVACLIVK--DGIVIGRGVT----AYGGCPHAEVQALEEA 63
           M  AL+ +R        N   V  +IV   +  +I               HAE+ A+  A
Sbjct: 1   MEQALKQARLAF---DKNEVPVGVVIVCRLNQKIIVSSHNNIEEKKNPLCHAEIIAINTA 57

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                 +       YVTLEPC+       CA  I    ++R+     D         L++
Sbjct: 58  CNLISSKNLNDYDIYVTLEPCAM------CASAISHSRLKRLFYGASDSKHGAVESNLRY 111

Query: 119 LSQ 121
            + 
Sbjct: 112 FNS 114


>gi|256616995|ref|ZP_05473841.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis ATCC
           4200]
 gi|256596522|gb|EEU15698.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis ATCC
           4200]
          Length = 151

 Score = 52.6 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 51/140 (36%), Gaps = 31/140 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
           M    +D  FM  ++  S      T T  +V   IV+D  +I  G      GG       
Sbjct: 1   MERIPWDQYFMGQSVLLSLRS---TCTRLTVGATIVRDKRIIAGGYNGSVSGGTHCIDEG 57

Query: 54  ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE+ A+ +    G    GA  YVT  PC        C + I++ GI+
Sbjct: 58  CYVVDNHCVRTIHAEMNAILQCAKFGVPTEGAEIYVTHFPCLQ------CTKMILQAGIK 111

Query: 99  RVVVCVDDPDVRVSGRGLQW 118
           ++    D  +   +   ++ 
Sbjct: 112 KIYYLKDYRNDAYALNLIEQ 131


>gi|154505762|ref|ZP_02042500.1| hypothetical protein RUMGNA_03302 [Ruminococcus gnavus ATCC 29149]
 gi|153793780|gb|EDN76200.1| hypothetical protein RUMGNA_03302 [Ruminococcus gnavus ATCC 29149]
          Length = 159

 Score = 52.6 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 42/109 (38%), Gaps = 18/109 (16%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGR----GVTAYGGCPHAEV-QALE 61
             ++  A+  S+      + N     L+V K+G +I       +T      HAE   A  
Sbjct: 6   EFYLRRAIEISKEAR--EAGNTPFGALLVNKEGEIIMEQGNIEITEKICTGHAEATLAAR 63

Query: 62  EAGEEAR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
            + E +R      T Y T EPC+       CA  I    I RVV  + +
Sbjct: 64  ASHEYSREFLWDCTLYTTAEPCAM------CAGAIYWANIGRVVYGMTE 106


>gi|329890129|ref|ZP_08268472.1| guanine deaminase [Brevundimonas diminuta ATCC 11568]
 gi|328845430|gb|EGF94994.1| guanine deaminase [Brevundimonas diminuta ATCC 11568]
          Length = 150

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 23/115 (20%)

Query: 8   ARFMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQAL 60
            R+++ A+  +       G          ++VKDG +I  GV           HAE++AL
Sbjct: 7   RRWLTQAVDLALENVRAGGR-----PFGAVLVKDGALIASGVNRMLATNDPSSHAEMEAL 61

Query: 61  EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
            +AG      +  GA  Y +  PC      P C    +   +  V     + D  
Sbjct: 62  RQAGPALGGVDLSGAVLYASGHPC------PMCLAAAVMTRVSAVYYAFSNADAE 110


>gi|228477298|ref|ZP_04061936.1| ComE operon protein 2 [Streptococcus salivarius SK126]
 gi|228251317|gb|EEK10488.1| ComE operon protein 2 [Streptococcus salivarius SK126]
          Length = 151

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 56/159 (35%), Gaps = 37/159 (23%)

Query: 1   MP--VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----- 53
           MP  +S  D  FM+ A   S+     T     V  ++VKD  +I  G             
Sbjct: 1   MPNRLSWQD-YFMANAELISKRS---TCDRAFVGAVLVKDKRIIATGYNGGVSETDNCNE 56

Query: 54  --------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                         HAE+ AL +    G   +    YVT  PC +      C + +++ G
Sbjct: 57  VGHYMEDGHCIRTVHAEMNALIQCAKEGISTKNTEIYVTHFPCIN------CTKALLQAG 110

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135
           I ++       + R     ++ + QKG+   +    E  
Sbjct: 111 IVKITY---KANYRPHPFAIELMEQKGVSYLQHDVPEVH 146


>gi|237845333|ref|XP_002371964.1| hypothetical protein TGME49_000420 [Toxoplasma gondii ME49]
 gi|211969628|gb|EEB04824.1| hypothetical protein TGME49_000420 [Toxoplasma gondii ME49]
          Length = 180

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 47/147 (31%), Gaps = 44/147 (29%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPS---VACLIVKDGIVIGRGVTAYGGCP-------- 53
           S+D  FM          +  T +N     V  ++ +   VI  G                
Sbjct: 22  SWDTYFMRLTF------LASTRSNCMKRRVGAIVARGNRVIATGYNGTPSQAANCNAGGC 75

Query: 54  --------------------HAEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQFI 92
                               HAE  AL EAG + A   T YVT  PC        CA+ +
Sbjct: 76  ARCNDPSVSQGRALEACECIHAEANALLEAGRDRAMNGTLYVTCLPCLG------CAKLV 129

Query: 93  IECGIRRVVVCVDDPDVRVSGRGLQWL 119
           ++  IR VV   +  D   +   L  +
Sbjct: 130 VQSAIRTVVYAEEYDDKSGALDLLTRM 156


>gi|195015670|ref|XP_001984248.1| GH15113 [Drosophila grimshawi]
 gi|193897730|gb|EDV96596.1| GH15113 [Drosophila grimshawi]
          Length = 194

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 57/162 (35%), Gaps = 36/162 (22%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG-------------- 50
           +D  FM+ A+  S+        +  V   IV K   ++  G   +               
Sbjct: 33  WDDYFMATAILSSKRSK---DPSTQVGACIVDKHKRIVAIGYNGFPRNCSDDVFPWSKDS 89

Query: 51  ----------GCPHAEVQALEE-AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                        HAE  A+    G    G   Y TL PC+       C + II+ GIR 
Sbjct: 90  DSDSIENKNMYVVHAEANAILNGNGASLDGTRLYTTLFPCNE------CTKLIIQSGIRN 143

Query: 100 VVVCVDDP-DVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
           ++   D   D        + L+  GII  + + ++ +I ++ 
Sbjct: 144 ILYISDKYSDKPTYRASKRMLNAVGIIYQQHVPTQRQIVINF 185


>gi|81300665|ref|YP_400873.1| tRNA-adenosine deaminase [Synechococcus elongatus PCC 7942]
 gi|81169546|gb|ABB57886.1| tRNA-adenosine deaminase [Synechococcus elongatus PCC 7942]
          Length = 168

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 17/120 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
            R+M+ A   +   +  T+    +  +IV  G ++  G          C HAE+ A+  A
Sbjct: 18  HRWMTIAYEQA--VIAGTAGEIPIGAVIVHQGHLLATGQNRRERDRDPCGHAEIIAIRAA 75

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                         YVTLEPC      P CA  II+  + +++   DDP        L  
Sbjct: 76  AARIGDWRLSDCQLYVTLEPC------PMCAGAIIQARLGQLIYAADDPKAGAIRSLLNL 129


>gi|312134555|ref|YP_004001893.1| cmp/dcmp deaminase zinc-binding protein [Caldicellulosiruptor
           owensensis OL]
 gi|311774606|gb|ADQ04093.1| CMP/dCMP deaminase zinc-binding protein [Caldicellulosiruptor
           owensensis OL]
          Length = 154

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 43/131 (32%), Gaps = 40/131 (30%)

Query: 31  VACLIVKDGIVIGRGV---------------------------TAYGGCPHAEVQALEEA 63
           V  LIVKD  ++  G                                   HAE  A+ +A
Sbjct: 27  VGALIVKDKRILATGYNGAPTGLPHCEEVGCLREKLNVPSGQRHELCRGLHAEQNAIIQA 86

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G    G+  Y T  PC        CA+ I+  GI++V+     PD        +   
Sbjct: 87  AKMGVVIDGSVIYTTTYPCVI------CAKMIVNAGIKKVIYKGSYPDEMSQ----KIFY 136

Query: 121 QKGIIVDRMME 131
           + GI V +  E
Sbjct: 137 EAGIEVVKFEE 147


>gi|331703568|ref|YP_004400255.1| deoxycytidylate deaminase [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328802123|emb|CBW54277.1| Deoxycytidylate deaminase (dCMP deaminase) [Mycoplasma mycoides
           subsp. capri LC str. 95010]
          Length = 146

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 34/148 (22%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT---------------------- 47
           M  A   +         N  V  ++V +   ++  G                        
Sbjct: 1   MLIAKASAMRSK---DPNTQVGAIVVNELQQIVATGYNGFPRGVSDDEFPWSKNNEDWLE 57

Query: 48  -AYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD- 105
             Y    HAE+ A+  +  +      YVTL PC+       CA+ II+ GI+R+    D 
Sbjct: 58  NKYAYVAHAELNAIVSSRSDLSNCDLYVTLFPCNE------CAKIIIQAGIKRIYYANDP 111

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESE 133
             D +      + L    I   ++ + E
Sbjct: 112 YHDKKEFIASKKMLDAVNIKYIKLPDIE 139


>gi|148239680|ref|YP_001225067.1| tRNA-specific adenosine deaminase [Synechococcus sp. WH 7803]
 gi|147848219|emb|CAK23770.1| tRNA-specific adenosine deaminase [Synechococcus sp. WH 7803]
          Length = 175

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 18/124 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEE 62
             +M   L  +   VG T   P VA +++ + G  IG G            HAE+ AL +
Sbjct: 16  RAWMQRLLNRAER-VGATGEIP-VAAVLLDEAGRCIGHGSNRRECLNDPLGHAELMALRQ 73

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
                        T  VTLEPC      P CA  +++  + +V+    D      G  + 
Sbjct: 74  GAWLLGDWRMNHCTLLVTLEPC------PMCAGALVQARVGQVIFAARDSKRGGLGSTIN 127

Query: 118 WLSQ 121
               
Sbjct: 128 LAEH 131


>gi|157963151|ref|YP_001503185.1| deaminase-reductase domain-containing protein [Shewanella pealeana
           ATCC 700345]
 gi|157848151|gb|ABV88650.1| bifunctional deaminase-reductase domain protein [Shewanella
           pealeana ATCC 700345]
          Length = 177

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 59/197 (29%), Gaps = 41/197 (20%)

Query: 156 IAVSQDNMIGMAGCGSVP---ITGFISKNQVH-LLRAQSDAILVGIGTVLADDPELTCRL 211
           IA S D  I            I      +       A+ DA+++G  T+           
Sbjct: 7   IATSLDGFIADKDNKVDWLHDIPNPDGLDLGFGDFMARIDALVMGRNTLE---------- 56

Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD 271
                     I+L+       +  +   +     +     D               ++  
Sbjct: 57  ----------IVLNFGIDWPYNKPVFVLSNTLTNVPAGLEDK--------------VFLV 92

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
              L +++  L  +G  +L ++GG      F+   L+D +I+    +++G G   S   E
Sbjct: 93  NGPLPQVIKQLNDQGYNNLYIDGG-KTIQGFLQQDLIDEMIITTIPVLLGGG--ISLFGE 149

Query: 332 GYLEKNFMCVRRDYFGS 348
                 F   + +    
Sbjct: 150 LASPLKFKHAKAERLLD 166


>gi|154302467|ref|XP_001551643.1| hypothetical protein BC1G_09810 [Botryotinia fuckeliana B05.10]
 gi|150855299|gb|EDN30491.1| hypothetical protein BC1G_09810 [Botryotinia fuckeliana B05.10]
          Length = 357

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 44/149 (29%), Gaps = 41/149 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D  FM  A   +            V C++V++  VI  G                   
Sbjct: 200 SWDQYFMQLA-SLAAQRSNCMKR--RVGCVLVREKRVISTGYNGTPRGLLNCGEGGCSRC 256

Query: 47  TAYGGCP---------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
               G           HAE  AL EAG E     A  Y    PC        C+  I++ 
Sbjct: 257 NEGQGSGVGLGTCLCLHAEENALLEAGRERVRENAILYCDTCPCL------TCSIKIVQV 310

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           GI  VV         +         Q GI
Sbjct: 311 GISEVVYSQGYS---MDAETAAVFGQAGI 336


>gi|330809392|ref|YP_004353854.1| bifunctional deaminase-reductase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377500|gb|AEA68850.1| putative bifunctional deaminase-reductase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 178

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 12/106 (11%)

Query: 244 PVIIVTEN-DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           PVI+++E   D  +  A + K    +       K L+  L  +GV  + V+GG  V  SF
Sbjct: 69  PVIVLSEQLADSPVPEALKGK----LRFSDLAPKDLMAELESQGVQRVYVDGG-RVVQSF 123

Query: 303 INSRLV-DSIILYRSQIVIGEGGIPSPLEEGYL-EKNFMCVRRDYF 346
           +   LV D +I     ++IG G    PL  G   + +   V    F
Sbjct: 124 LRDGLVTDMVITTV-PVLIGSGR---PLFGGLERDVDLKLVSSRSF 165


>gi|306823191|ref|ZP_07456567.1| riboflavin biosynthesis protein RibD domain protein
           [Bifidobacterium dentium ATCC 27679]
 gi|309801614|ref|ZP_07695735.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Bifidobacterium dentium JCVIHMP022]
 gi|304553823|gb|EFM41734.1| riboflavin biosynthesis protein RibD domain protein
           [Bifidobacterium dentium ATCC 27679]
 gi|308221746|gb|EFO78037.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Bifidobacterium dentium JCVIHMP022]
          Length = 222

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 7/127 (5%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK-KNINIIYC--DCRDLKKL 278
           +I D    LS       +    P++I+T        LAF   +NI+ I    D  DL + 
Sbjct: 83  VIPDTRGTLSWSD---DSGSAKPLVILTCEQVSEDYLAFLDSRNISWIATGRDRIDLARA 139

Query: 279 LTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
             IL    GV  + V GG  +   F+++ L+D + +     + G  G+ +  +   +   
Sbjct: 140 SEILNEEFGVERMAVVGGGTINGGFLDAGLLDEVSILIGPGIDGRKGMSATFDGLPMNHR 199

Query: 338 FMCVRRD 344
            + ++ +
Sbjct: 200 PVALKLE 206


>gi|116628436|ref|YP_821055.1| late competence protein required for DNA binding and uptake
           [Streptococcus thermophilus LMD-9]
 gi|116101713|gb|ABJ66859.1| Deoxycytidylate deaminase [Streptococcus thermophilus LMD-9]
 gi|312279054|gb|ADQ63711.1| Cytidine/deoxycytidylate deaminase family protein [Streptococcus
           thermophilus ND03]
          Length = 151

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 50/149 (33%), Gaps = 34/149 (22%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----------------- 51
            FM+ A   S+     T     V  ++VKD  +I  G                       
Sbjct: 10  YFMANAELISKRS---TCDRAFVGAVLVKDKRIIATGYNGGVSEADNCNEVGHYMEDGHC 66

Query: 52  --CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               HAE+ AL +    G   +    YVT  PC +      C + +++ G   VV     
Sbjct: 67  IRTVHAEMNALIQCAKEGISTKNTEIYVTHFPCIN------CTKALLQAG---VVKITYK 117

Query: 107 PDVRVSGRGLQWLSQKGIIVDRMMESEGK 135
            + R     ++ + QKG+   +    E  
Sbjct: 118 ANYRPHAFAIELMEQKGVSYVQHDVPEVH 146


>gi|321265852|ref|XP_003197642.1| hypothetical protein CGB_N3030C [Cryptococcus gattii WM276]
 gi|317464122|gb|ADV25855.1| Hypothetical protein CGB_N3030C [Cryptococcus gattii WM276]
          Length = 205

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 60/186 (32%), Gaps = 57/186 (30%)

Query: 1   MPVSSF--DARFMSAALRFSRW--------HVGLT------STNPSVACLIVK------- 37
           M  ++   D   M   +  S           VG T      S +      I+K       
Sbjct: 12  MSSTADARDVAIMKHCIELSYNCEVSPSAFSVGSTLFLPSSSPHFP----ILKSRFPSFS 67

Query: 38  -------DGIVIGRGVTAY-GGCPHAEVQALEE----AGEEARG---------------- 69
                  +G+++  G +    G  HAE  AL       GE   G                
Sbjct: 68  KTDSAETEGLILADGWSRQIPGNTHAEANALTNFRKFYGELLEGTDSTTSDLPPIENVLA 127

Query: 70  -ATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
             + Y T+EPCS      P CA  ++   +  V + V++P   V   G++ L    I V 
Sbjct: 128 DVSCYATMEPCSVRTSGGPSCALELVRSKVNSVYLGVEEPPDFVQCEGVRILQDGNIEVI 187

Query: 128 RMMESE 133
            +   E
Sbjct: 188 SVSGLE 193


>gi|296166870|ref|ZP_06849287.1| tRNA-specific adenosine deaminase [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295897747|gb|EFG77336.1| tRNA-specific adenosine deaminase [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 152

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 50/132 (37%), Gaps = 22/132 (16%)

Query: 30  SVACLIV-KDGIVIGRGVTAYGG----CPHAEVQALEEA------GEEARGATAYVTLEP 78
            +  ++V  DG  + R V A         HAE+ AL  A      G    GAT  VT+EP
Sbjct: 24  PIGAVVVGADGTELARAVNAREALGDPTAHAEILALRAAAGVLGDGWRLEGATLAVTVEP 83

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESE 133
           C        CA  ++   + R+V    +P     G          L+ +  +   ++  E
Sbjct: 84  C------TMCAGALVLARVGRLVFGAWEPKTGAVGSLWDVVRDRRLNHRPEVRGGVLAEE 137

Query: 134 GKIFLHAYLTRQ 145
               L A+  RQ
Sbjct: 138 CAAPLEAFFARQ 149


>gi|23097829|ref|NP_691295.1| hypothetical protein OB0374 [Oceanobacillus iheyensis HTE831]
 gi|22776053|dbj|BAC12330.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 195

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           GGA++A  F +  L+D + L+   I++G+G    P  +   ++N+       F   V L 
Sbjct: 126 GGASLAEEFFHYDLIDEVWLFIFPILLGDGKRMFPTMQN--QRNYHLKEYKRFDDTVFLN 183

Query: 354 Y-IGKNLCLQEL 364
           Y  G N+   +L
Sbjct: 184 YERGNNILKGDL 195


>gi|224049770|ref|XP_002190430.1| PREDICTED: dCMP deaminase [Taeniopygia guttata]
          Length = 159

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 50/142 (35%), Gaps = 35/142 (24%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------------- 46
           M+ A   ++        +  V   IV  +  ++G G                        
Sbjct: 1   MAVAFLSAQRSK---DPSSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWTRTGANRLD 57

Query: 47  TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           T Y    HAE+ A+  +   + +G + YV L PC+       CA+ II+ GI+ V+   D
Sbjct: 58  TKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNE------CAKLIIQAGIKEVIFMSD 111

Query: 106 -DPDVRVSGRGLQWLSQKGIIV 126
              D        +     GII 
Sbjct: 112 KYHDTTEMTAARRMFDLAGIIY 133


>gi|326789215|ref|YP_004307036.1| bifunctional deaminase-reductase domain protein [Clostridium
           lentocellum DSM 5427]
 gi|326539979|gb|ADZ81838.1| bifunctional deaminase-reductase domain protein [Clostridium
           lentocellum DSM 5427]
          Length = 174

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 3/103 (2%)

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
           V   + +  N ++I+   +D   L+  L  +    + V GG  +   F+ + L+D  I+ 
Sbjct: 75  VYTKSKQDLNEDVIFT-SQDPTNLIKALKEKEGKDIWVIGGTEIVDLFVKADLIDEYIIT 133

Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
            + +++GEG   S  +    E   +      F       Y+ K
Sbjct: 134 IAPVILGEG--ISLFKGDKSEIRLVLKEMRAFNGFTQNHYVRK 174


>gi|134094122|ref|YP_001099197.1| putative guanine deaminase [Herminiimonas arsenicoxydans]
 gi|133738025|emb|CAL61070.1| putative Guanine deaminase (Guanase) (Guanine aminase) (Guanine
           aminohydrolase) (GAH) (GDEase) [Herminiimonas
           arsenicoxydans]
          Length = 153

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 19/120 (15%)

Query: 13  AALRFSRW-HVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEE- 66
            A+R ++  H            ++  DG +I  G    V ++    HAE++ L  A +  
Sbjct: 10  EAVRLAKNNHQQGGRP---FGAVLTMDGEIIATGVNNIVHSHDPTTHAEMETLRAASQRL 66

Query: 67  ----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                +G+  Y +  PC      P C   ++  G+  V    D+ D    G   + + Q 
Sbjct: 67  GRPNLKGSVVYASGHPC------PMCLAALVLTGVDAVYYAFDNQDAAPYGFSSEAIYQA 120


>gi|261250832|ref|ZP_05943406.1| putative deoxycytidylate deaminase [Vibrio orientalis CIP 102891]
 gi|260937705|gb|EEX93693.1| putative deoxycytidylate deaminase [Vibrio orientalis CIP 102891]
          Length = 149

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 40/125 (32%), Gaps = 28/125 (22%)

Query: 31  VACLIVKDGIVIGRGVTAYGG-----------------CPHAEVQALEEAGEEARGATAY 73
           V  +I K   ++  G   Y                     HAE  A+  A  +  G   +
Sbjct: 27  VGAVITKQNRIVSVGFNGYPHGISDSAMTDDREMKYLKTLHAEENAILFAKRDLDGCEIW 86

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS-----GRGLQWLSQKGIIVDR 128
           VT  PC      P CA  II+ GI  V      PD             +   Q G+ V+ 
Sbjct: 87  VTHFPC------PNCAAKIIQTGISAVHCPEQTPDFLSRWGDKIKVSQEMFLQAGVKVNW 140

Query: 129 MMESE 133
           +   +
Sbjct: 141 LPLED 145


>gi|110637702|ref|YP_677909.1| dihydrofolate reductase family protein [Cytophaga hutchinsonii ATCC
           33406]
 gi|110280383|gb|ABG58569.1| dihydrofolate reductase family protein [Cytophaga hutchinsonii ATCC
           33406]
          Length = 176

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 2/98 (2%)

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
             + D  +     + +I  I     DLK L+  L      ++  +GGA +    +   L+
Sbjct: 67  HADKDAYIITRTPRPSIGSIKFYTDDLKSLVNKLKSENGKNIFCDGGAEIVSELLKDDLI 126

Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
           D  I+    I++G G      ++G  E+    +    F
Sbjct: 127 DEFIISVIPILVGNGTK--LFKDGRPEQILELISTKQF 162


>gi|46135871|ref|XP_389627.1| hypothetical protein FG09451.1 [Gibberella zeae PH-1]
          Length = 177

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 50/155 (32%), Gaps = 27/155 (17%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYG--------GCPHAEV 57
             FM  AL  ++      +    V  ++V    G V+  G +           G  HAE 
Sbjct: 15  EAFMEFALTQAKKSPPAANK-FCVGAILVDAAKGKVLSTGYSLEYPRDYKGDPGTTHAEQ 73

Query: 58  QA-LEEAGEE-----------ARGATAYVTLEPCSHY--GRSPPCAQFII-ECGIRRVVV 102
              ++ A E                  Y T+EPC+    G      + +  +  I+ V V
Sbjct: 74  CCFIKIADEHNLPEERIHEVLPEDTVLYTTMEPCNERLSGNMTCTTRILRLKSAIKTVYV 133

Query: 103 CVDDPDVRVSGRGLQ-WLSQKGIIVDRMMESEGKI 136
            + +P   +     Q  L   G+ V   +E     
Sbjct: 134 GIKEPGTFIGHNEGQERLEANGVKVVFPVEHWRDR 168


>gi|257065945|ref|YP_003152201.1| CMP/dCMP deaminase zinc-binding [Anaerococcus prevotii DSM 20548]
 gi|256797825|gb|ACV28480.1| CMP/dCMP deaminase zinc-binding [Anaerococcus prevotii DSM 20548]
          Length = 148

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 35/152 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV---------------TA 48
           S++  FM  A   +R     T     V C++V  +  ++  G                T 
Sbjct: 7   SWEEYFMKLAKTVARRG---TCDRAYVGCVLVNEENRIVSTGYNGSIKGNPHCDEVGHTM 63

Query: 49  YGG----CPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
             G      HAE+ A+    + G   +    YVT  PC +      C + +I+ GI+++ 
Sbjct: 64  RDGHCIATIHAEMNAILYCAKEGIATKNTICYVTHFPCLN------CTKSLIQAGIKKIY 117

Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
                   R+    ++ L +  I  +++  SE
Sbjct: 118 YETAY---RMDEYAVELLERNNISFEKIEISE 146


>gi|57234807|ref|YP_181158.1| cytidine/deoxycytidylate deaminase family protein [Dehalococcoides
           ethenogenes 195]
 gi|270307783|ref|YP_003329841.1| cytidine/deoxycytidylate deaminase, Zn-binding protein
           [Dehalococcoides sp. VS]
 gi|57225255|gb|AAW40312.1| cytidine/deoxycytidylate deaminase family protein [Dehalococcoides
           ethenogenes 195]
 gi|270153675|gb|ACZ61513.1| cytidine/deoxycytidylate deaminase, Zn-binding protein
           [Dehalococcoides sp. VS]
          Length = 157

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 42/156 (26%), Gaps = 45/156 (28%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
           M   + D  F+  A   +     +      V  + VKD  ++  G               
Sbjct: 1   MSRPNADEYFLKIAAVVAERSTCVRH---HVGAVAVKDKHILSTGYNGAPAGLTDCLELG 57

Query: 47  -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE   + +A   G    GAT Y T  PC        CA+
Sbjct: 58  CLRNQNGIPSGTRHEICRAVHAEQNVIIQAALHGTSLEGATVYATHTPC------VLCAK 111

Query: 91  FIIECGIR-RVVVCVDDPDVRVSGRGLQWLSQKGII 125
            +    I+  V       D       +    Q GI 
Sbjct: 112 MLTNARIKRYVSYGKYADD-----SFIDMFKQAGIE 142


>gi|149197544|ref|ZP_01874595.1| hypothetical protein LNTAR_01145 [Lentisphaera araneosa HTCC2155]
 gi|149139562|gb|EDM27964.1| hypothetical protein LNTAR_01145 [Lentisphaera araneosa HTCC2155]
          Length = 151

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 54/155 (34%), Gaps = 42/155 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG---------GCP-- 53
           S+D  FM+ A   +            VA +IVKD  VI  G              GCP  
Sbjct: 8   SWDQYFMNIAHVAAERSSCSRR---HVAAVIVKDKRVISTGYNGTPRGVKNCDDGGCPRC 64

Query: 54  ----------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  ++ +A   G    GA+ Y T  PC        CA+ II 
Sbjct: 65  NSDVASGHGLDECLCCHAEENSIVQAACHGISINGASIYTTYSPCL------LCAKMIIN 118

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            GI  V+         +     Q L++ G+ +  +
Sbjct: 119 AGIHEVIF---HQRYSIDSTSSQLLNEAGVTLRPV 150


>gi|323499282|ref|ZP_08104259.1| putative deoxycytidylate deaminase [Vibrio sinaloensis DSM 21326]
 gi|323315670|gb|EGA68704.1| putative deoxycytidylate deaminase [Vibrio sinaloensis DSM 21326]
          Length = 150

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 32/95 (33%), Gaps = 23/95 (24%)

Query: 31  VACLIVKDGIVIGRGVTAYGG-----------------CPHAEVQALEEAGEEARGATAY 73
           V  +I K   ++  G   Y                     HAE  A+  A  +  G   +
Sbjct: 27  VGAVITKQNRIVSVGFNGYPHGISDSAMTDDREMKYLKTLHAEENAILFAKRDLDGCEIW 86

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           VT  PC      P CA  II+ GI  V      PD
Sbjct: 87  VTHFPC------PNCAAKIIQTGISAVHCPEQTPD 115


>gi|144899704|emb|CAM76568.1| Dihydrofolate reductase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 172

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 63/182 (34%), Gaps = 39/182 (21%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFI-SKNQVHLLRAQSDAILVGIGTVLADDPEL 207
            S + L +A S D  I  A  G   +  +  S      L A+ + ++VG  T      +L
Sbjct: 1   MSRVRLFMAASVDGYIATADGGLDWLEPYDGSDFGYDRLMAEVEVVVVGRTTF-----DL 55

Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
                         ++L     LS  + +                               
Sbjct: 56  IAGFPAWPYPGKRVVVLTHRPLLSPPAGV------------------------------- 84

Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
             C   D+  L   L  +    + ++GGA    +F+++ L+D + L+   I++G+ GIP 
Sbjct: 85  -ECHAGDVAALTERLRRQCSADIFIDGGAQTVRAFLDADLIDHLDLFTIPILLGQ-GIPR 142

Query: 328 PL 329
            L
Sbjct: 143 FL 144


>gi|325661942|ref|ZP_08150562.1| hypothetical protein HMPREF0490_01300 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471794|gb|EGC75012.1| hypothetical protein HMPREF0490_01300 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 177

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 64/211 (30%), Gaps = 36/211 (17%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
              + L IA+S D  I  +  G   +   G  S   V        A +  I TVL     
Sbjct: 1   MRKVNLFIAMSLDGYIADSEGGVDWLGGQGEES-EDV----DVYSAFIKDIDTVL----- 50

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
               +     H    I+               T L     I       V      K   N
Sbjct: 51  ----MGWKTYHQ---IV---------------TELSPEEWIYHNLKTYVFTHKEHKSTKN 88

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           + + D RD   L+T L  +    + + GGA +    +   L+D   +     ++G  GI 
Sbjct: 89  VQFID-RDPADLITSLREKDGRDIWICGGANLIQQMVKEDLIDCYYITIIPTILGS-GIR 146

Query: 327 SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
                   E     ++   +     L Y+ +
Sbjct: 147 LFDNLAGRELKLKLIKTQTYNGMTDLVYVRR 177


>gi|266622681|ref|ZP_06115616.1| putative cytosine deaminase [Clostridium hathewayi DSM 13479]
 gi|288865589|gb|EFC97887.1| putative cytosine deaminase [Clostridium hathewayi DSM 13479]
          Length = 160

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 18/109 (16%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGR----GVTAYGGCPHAEV-QALE 61
             ++  A+  S+      + N     L+V KDG ++       +T      HAE   A  
Sbjct: 7   EYYLRRAIEISKEAR--AAGNTPFGALLVNKDGDIVMEQGNIEITDKICTGHAEATLAAR 64

Query: 62  EAGEEAR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
            + E  +      T Y T EPC+       CA  I    I RVV  + +
Sbjct: 65  ASHEFTKDYLWDCTLYTTAEPCAM------CAGAIYWANIGRVVYGMTE 107


>gi|86144699|ref|ZP_01063031.1| hypothetical protein MED222_09818 [Vibrio sp. MED222]
 gi|85837598|gb|EAQ55710.1| hypothetical protein MED222_09818 [Vibrio sp. MED222]
          Length = 177

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 6/86 (6%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           +LK+++  L  +G+ +L ++GG     +F+   L+D +I+    IV+G G   SPL    
Sbjct: 95  ELKQIVADLNNKGLNNLYIDGG-ITIQNFLKEDLIDELIISTIPIVLGGG---SPLFGDL 150

Query: 334 LEK-NFMCVRRDYFGSDVC-LEYIGK 357
           +   +F       +  ++    Y+ K
Sbjct: 151 VSPVDFTLKGVTTYLDEIVQTHYLRK 176


>gi|110598481|ref|ZP_01386752.1| CMP/dCMP deaminase, zinc-binding [Chlorobium ferrooxidans DSM
           13031]
 gi|110339931|gb|EAT58435.1| CMP/dCMP deaminase, zinc-binding [Chlorobium ferrooxidans DSM
           13031]
          Length = 177

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 49/153 (32%), Gaps = 44/153 (28%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------------T 47
             FMS A   SR     T  +  +  +IV+D  ++  G                     T
Sbjct: 30  EYFMSVAHLISRRA-TCTRGH--IGAVIVRDHNILSTGYNGAPSGLPHCNETTCRIYRST 86

Query: 48  AYGGCP--------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
              G          HAE+ A+  A   G     A  Y+T  PC H      C + +I  G
Sbjct: 87  HPDGTVEENCVNTIHAEINAIAMAAKHGVSIGEADIYITSSPCIH------CLKVLINVG 140

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           I+ +                + L   GI + ++
Sbjct: 141 IKTIYY----DKPYKIEHIDELLRLSGIRLVQV 169


>gi|323145928|gb|ADX32169.1| hypothetical protein [Pseudomonas phage P3_CHA]
 gi|323146114|gb|ADX32354.1| hypothetical protein [Pseudomonas phage PAK_P3]
          Length = 138

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 28/114 (24%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----------------YGG 51
             FM  A  F+   VG+ +    V  +IV+   +I +G                      
Sbjct: 7   EAFMRCAESFAECSVGVRAK---VGAVIVQGNKIISQGYNGLPSGLEGPLENEEGVTRPE 63

Query: 52  CPHAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
             HAE  A   L  + E A+GA  + T+ PC +      CA  I++ GI+RV  
Sbjct: 64  VRHAEKNALLWLSCSQESAQGAWMFATMSPCEY------CAHDIVDAGIKRVYY 111


>gi|242018582|ref|XP_002429753.1| tRNA-specific adenosine deaminase subunit TAD2, putative [Pediculus
           humanus corporis]
 gi|212514765|gb|EEB17015.1| tRNA-specific adenosine deaminase subunit TAD2, putative [Pediculus
           humanus corporis]
          Length = 188

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 47/160 (29%), Gaps = 27/160 (16%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA-- 63
           +M  AL F+   +        V C+ V D  +I  G            HAE+  ++    
Sbjct: 16  WMKIALGFAENALKNNEV--PVGCIFVYDNEIIANGANTVNETKNATRHAEMNCIDTVLS 73

Query: 64  ---------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
                     E  +     VT+EPC        C+  + E  ++R+     +        
Sbjct: 74  WCKERNLNFTEVFKAMDVVVTVEPCIM------CSAALFELKVKRITYGCKNYRFGGCST 127

Query: 115 GLQW----LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
                    +   ++V  + + E    L  +         
Sbjct: 128 VFDISKIYRNSNCVMVGGVYDEESINLLKDFYKGSNPNVP 167


>gi|312200616|ref|YP_004020677.1| CMP/dCMP deaminase zinc-binding protein [Frankia sp. EuI1c]
 gi|311231952|gb|ADP84807.1| CMP/dCMP deaminase zinc-binding protein [Frankia sp. EuI1c]
          Length = 198

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 40/103 (38%), Gaps = 15/103 (14%)

Query: 29  PSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
           P  A +I  DG V+GRG      A     HAE+ AL  A          GAT  VTLEPC
Sbjct: 63  PIGAVVIGADGTVLGRGHNIREVAADPTGHAEIVALRAAATAVGEWRLTGATLVVTLEPC 122

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                   CA  ++   + R+V    D      G     +  +
Sbjct: 123 ------TMCAGALVLARVDRLVYGAIDEKAGAVGSLWDVVRDR 159


>gi|27367425|ref|NP_762952.1| dihydrofolate reductase [Vibrio vulnificus CMCP6]
 gi|27358994|gb|AAO07942.1|AE016811_183 Dihydrofolate reductase [Vibrio vulnificus CMCP6]
          Length = 177

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
           L  ++  L  +G   L ++GG  V  SF+   L+D +I+    +++G  GIP        
Sbjct: 96  LPTMVAQLHQQGYQRLYIDGGKTV-QSFLAEDLIDEMIITTIPVLLGA-GIP-LFGRLPK 152

Query: 335 EKNFMCVRRDYFGS 348
             NF  +  +    
Sbjct: 153 ALNFKHIHAERLAD 166


>gi|295425707|ref|ZP_06818394.1| deoxycytidylate deaminase [Lactobacillus amylolyticus DSM 11664]
 gi|295064723|gb|EFG55644.1| deoxycytidylate deaminase [Lactobacillus amylolyticus DSM 11664]
          Length = 160

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 53/144 (36%), Gaps = 34/144 (23%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------TAYGGCP 53
             FM  AL  ++      +    V  ++V+D  +IG G                      
Sbjct: 9   QYFMMQALVIAQRSTCNRA---LVGSVLVRDNRIIGTGYNGSISRQPHCDDVGHQMVDGH 65

Query: 54  -----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                H+E+ +L +    G    G   YVT  PC +      C + +++ G++R+     
Sbjct: 66  CVRTIHSEMNSLIQCAKNGVSTDGTEIYVTHFPCYN------CTKALVQAGVKRINY--- 116

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRM 129
             + R +   ++ L   G+  +++
Sbjct: 117 YFNYRDNPLAMKLLQDCGVPYEQI 140


>gi|116180106|ref|XP_001219902.1| hypothetical protein CHGG_00681 [Chaetomium globosum CBS 148.51]
 gi|88184978|gb|EAQ92446.1| hypothetical protein CHGG_00681 [Chaetomium globosum CBS 148.51]
          Length = 393

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 50/153 (32%), Gaps = 48/153 (31%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           S+DA FMS A   +            V C++V+D  VI  G     G P           
Sbjct: 237 SWDAYFMSLA-SLAAQRSNCMKR--RVGCVVVRDKRVISTGY---NGTPRGLRNCGEGGC 290

Query: 54  --------------------HAEVQALEEAG-EEAR-GATAYVTLEPCSHYGRSPPCAQF 91
                               HAE  AL EAG E  R GA  Y    PC        C+  
Sbjct: 291 ARCNAGEGGSGHGLATCLCIHAEENALLEAGRERLRDGAVLYCDTCPCL------TCSIK 344

Query: 92  IIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           I++ G+  VV         + G       + G+
Sbjct: 345 IVQVGVGEVVYNQGYS---MDGETAAVFREAGV 374


>gi|322370973|ref|ZP_08045526.1| bifunctional deaminase-reductase domain protein [Haladaptatus
           paucihalophilus DX253]
 gi|320549408|gb|EFW91069.1| bifunctional deaminase-reductase domain protein [Haladaptatus
           paucihalophilus DX253]
          Length = 207

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 16/95 (16%)

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVT 288
              + +         ++  +  DP                D  D  L++       + V 
Sbjct: 91  PFQAPVF--------VLTHQRRDP---WVREGGTTFTFVTDGIDSALEQATEAAGKQDVR 139

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
              + GGAAV   F+ + L+D + ++ + +++G+G
Sbjct: 140 ---IAGGAAVVQQFLEAGLIDELQIHIAPVLLGDG 171


>gi|24380210|ref|NP_722165.1| putative deoxycytidylate deaminase [Streptococcus mutans UA159]
 gi|24378216|gb|AAN59471.1|AE015011_10 putative deoxycytidylate deaminase [Streptococcus mutans UA159]
          Length = 150

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 43/132 (32%), Gaps = 31/132 (23%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----------------- 51
            FM+ A   S+      +    V  ++VK+  +I  G                       
Sbjct: 10  YFMANAELISKRSTCNRA---YVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHC 66

Query: 52  --CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               HAE+ AL +    G  A     YVT  PC +      C + +++ G++++      
Sbjct: 67  IRTVHAEMNALIQCAKEGISANNTEIYVTHFPCIN------CTKALLQAGVKKITYNTAY 120

Query: 107 PDVRVSGRGLQW 118
                +   +  
Sbjct: 121 RIHPFAIELMTQ 132


>gi|227890744|ref|ZP_04008549.1| competence protein ComEB [Lactobacillus salivarius ATCC 11741]
 gi|301300424|ref|ZP_07206625.1| ComE operon protein 2 [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|227867682|gb|EEJ75103.1| competence protein ComEB [Lactobacillus salivarius ATCC 11741]
 gi|300851967|gb|EFK79650.1| ComE operon protein 2 [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 162

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 31/137 (22%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53
             FM  A+  S      T    SV  ++V+D  VI  G                      
Sbjct: 14  QYFMLQAVLLSLRS---TCERLSVGAILVRDKRVIAGGYNGAVSGDDHCIDVGCYVVDGH 70

Query: 54  -----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE+ A+ +    G    GA  YVT  PC        C + +++ GI+++    +
Sbjct: 71  CLRTIHAEMNAVLQCSKFGIPTDGAEIYVTDFPCLQ------CTKSLLQAGIKKIYYMRN 124

Query: 106 DPDVRVSGRGLQWLSQK 122
             +   + R L+     
Sbjct: 125 YHNDDYAIRLLKRKKVA 141


>gi|310722262|ref|YP_003969086.1| dCMP deaminase [Aeromonas phage phiAS4]
 gi|306021105|gb|ADM79640.1| dCMP deaminase [Aeromonas phage phiAS4]
          Length = 172

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 46/136 (33%), Gaps = 49/136 (36%)

Query: 31  VACLIVKDGIVIGRGV--------------------------------------TAYGGC 52
           V  +I KDG +I  G                                        +    
Sbjct: 24  VGAIISKDGRIISTGYNGTPAGCNHANCDDHAKKSGWLDSYGKLRGMYRQAHSEWSKANE 83

Query: 53  PHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
            HAE+ A+  A   G+   GA  +VT+ PC      P CA+ I + GI+RVV   ++   
Sbjct: 84  IHAELNAILYAAKTGQSIDGAEMHVTVSPC------PDCAKAIAQSGIKRVVY--NELYD 135

Query: 110 RVSGRGLQWLSQKGII 125
           R        L + G+ 
Sbjct: 136 RNPSGWDDILIKSGVE 151


>gi|289641910|ref|ZP_06474066.1| hypothetical protein FsymDgDRAFT_1324 [Frankia symbiont of Datisca
           glomerata]
 gi|289508319|gb|EFD29262.1| hypothetical protein FsymDgDRAFT_1324 [Frankia symbiont of Datisca
           glomerata]
          Length = 82

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%)

Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            L  L  RG+  +L EGG ++     ++ L+D + L  + ++ G
Sbjct: 2   ALRALGERGLGRVLCEGGPSLHADLADAGLLDELCLTFAPLLAG 45


>gi|283455769|ref|YP_003360333.1| deaminase-reductase domain-containing protein [Bifidobacterium
           dentium Bd1]
 gi|283102403|gb|ADB09509.1| deaminase-reductase domain-containing protein [Bifidobacterium
           dentium Bd1]
          Length = 222

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 7/129 (5%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK-KNINIIYC--DCRDLKKL 278
           +I D    LS       +    P++I+T        LAF   +NI+ I    D  DL + 
Sbjct: 83  VIPDTRGTLSWSD---DSGSAKPLVILTCEQVSEDYLAFLDSRNISWIATGRDRIDLARA 139

Query: 279 LTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
             IL    GV  + V GG  +   F+++ L+D + +     + G  G+ +  +   +   
Sbjct: 140 SEILNEEFGVERMAVVGGGTINGGFLDAGLLDEVSILIGPGIDGRKGMSAAFDGLPMNHR 199

Query: 338 FMCVRRDYF 346
            + ++ +  
Sbjct: 200 PVALKLESV 208


>gi|290892734|ref|ZP_06555726.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|290557794|gb|EFD91316.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
          Length = 174

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           + + GGA +   F+  + +D  ++  + I++G+G    PL E   E          FG  
Sbjct: 107 IWLVGGAKLVQQFLKEKAIDRFVITIAPIILGKG---IPLFEEDREHALELEEVTRFGQF 163

Query: 350 VCLEY 354
             L Y
Sbjct: 164 AQLSY 168


>gi|37677190|ref|NP_937586.1| dihydrofolate reductase [Vibrio vulnificus YJ016]
 gi|37201735|dbj|BAC97556.1| dihydrofolate reductase [Vibrio vulnificus YJ016]
          Length = 177

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
           L  ++  L  +G   L ++GG  V  SF+   L+D +I+    +++G G    PL     
Sbjct: 96  LPTVVEQLHQQGYQRLYIDGGKTV-QSFLAEDLIDEMIITTIPVLLGAG---IPLFGSLP 151

Query: 335 EK-NFMCVRRDYFGS 348
           +  NF  +       
Sbjct: 152 KALNFKHIHAQRLAD 166


>gi|331085809|ref|ZP_08334892.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330406732|gb|EGG86237.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 177

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 67/211 (31%), Gaps = 36/211 (17%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
              + L IA+S D  I  +  G   +   G  S   V        A +  I TVL     
Sbjct: 1   MRKVNLFIAMSLDGYIADSEGGVDWLGGQGEES-EDV----DVYSAFIKDIDTVL----- 50

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
               +     H    I+     +LS +  I          + T  +          KN+ 
Sbjct: 51  ----MGWKTYHQ---IV----TELSPEEWIYHNL---KTYVFTHKEHKST------KNVQ 90

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
            I    RD   L+T L  +    + + GGA +    +   L+D   +     ++G  GI 
Sbjct: 91  FI---NRDPADLITSLREKDGKDIWICGGANLIQQMVKEDLIDCYYITIIPTILGS-GIR 146

Query: 327 SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
                   E     ++   +     L Y+ +
Sbjct: 147 LFDNLAGKELELKLIKTQTYNGMTDLVYVRR 177


>gi|298250631|ref|ZP_06974435.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
           racemifer DSM 44963]
 gi|297548635|gb|EFH82502.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
           racemifer DSM 44963]
          Length = 169

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 31/49 (63%)

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            ++ L+ L G+G T+ L+ GGA + ++F+   LVD +I   + ++ G+G
Sbjct: 84  PQEALSYLQGKGHTTALLSGGADLHNAFLGQGLVDEVIFNVAPVMEGKG 132


>gi|126651687|ref|ZP_01723890.1| hypothetical protein BB14905_13780 [Bacillus sp. B14905]
 gi|126591636|gb|EAZ85742.1| hypothetical protein BB14905_13780 [Bacillus sp. B14905]
          Length = 176

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           +  +     DL      L  +  T + + GGA +  +F+  +LVD  I+  +  ++G  G
Sbjct: 83  VEHVEFVQGDLVAFTKNLKQQPGTKIWMVGGADILDAFLQEQLVDEWIITITPHLLGA-G 141

Query: 325 IPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           IP   +    E +   +    +G  V + Y
Sbjct: 142 IPLFKQPRPFE-DLKLLEIKRYGQMVQMHY 170


>gi|294508554|ref|YP_003572613.1| Conserved hypothetical protein containing cytidine and
           deoxycytidylate deaminase zinc-binding protein
           [Salinibacter ruber M8]
 gi|294344883|emb|CBH25661.1| Conserved hypothetical protein containing cytidine and
           deoxycytidylate deaminase zinc-binding protein
           [Salinibacter ruber M8]
          Length = 158

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 45/121 (37%), Gaps = 23/121 (19%)

Query: 1   MPVS--SFD-ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVI-----GRGVTAYGG 51
           MP S  + D  RF+ AA+  +       + NP    ++V   G V+       G T    
Sbjct: 1   MPDSVDALDHERFVRAAIDEAASAQ--DAGNPPFGAVLVGPGGTVLDRAGNTEGRTGDC- 57

Query: 52  CPHAEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
             HAE   +  A      E    AT Y + EPC+       CA  I    I RVV  +  
Sbjct: 58  TGHAETNLVRAASQEYDPERLAKATLYASTEPCAM------CAGAIFWARIGRVVFGLRA 111

Query: 107 P 107
            
Sbjct: 112 E 112


>gi|323485387|ref|ZP_08090735.1| hypothetical protein HMPREF9474_02486 [Clostridium symbiosum
           WAL-14163]
 gi|323694149|ref|ZP_08108328.1| dCMP deaminase [Clostridium symbiosum WAL-14673]
 gi|323401250|gb|EGA93600.1| hypothetical protein HMPREF9474_02486 [Clostridium symbiosum
           WAL-14163]
 gi|323501866|gb|EGB17749.1| dCMP deaminase [Clostridium symbiosum WAL-14673]
          Length = 177

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 52/155 (33%), Gaps = 37/155 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT---------------- 47
           ++D  FM  A + S   +     +  V   IV  D  ++  G                  
Sbjct: 23  TWDEYFMGVA-KLS--AMRSKDPSTQVGACIVSGDNKILSMGYNGFPKGCSDDEFPWGKE 79

Query: 48  ---------AYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                     Y    H+E+ A+    G    G+  YVTL PC+       CA+ II+ GI
Sbjct: 80  LETEDPYNAKYFYTTHSELNAILNYRGGSLEGSKLYVTLFPCNE------CAKAIIQAGI 133

Query: 98  RRVVVCVDDP-DVRVSGRGLQWLSQKGIIVDRMME 131
           + ++   D            + L   G+   +  +
Sbjct: 134 KTLIYDSDKYGATPSVRASKRMLDSAGVRYYQYNQ 168


>gi|90961656|ref|YP_535572.1| ComE operon protein 2 [Lactobacillus salivarius UCC118]
 gi|90820850|gb|ABD99489.1| ComE operon protein 2 [Lactobacillus salivarius UCC118]
 gi|300214461|gb|ADJ78877.1| ComE operon protein 2 [Lactobacillus salivarius CECT 5713]
          Length = 158

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 31/137 (22%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53
             FM  A+  S      T    SV  ++V+D  VI  G                      
Sbjct: 10  QYFMLQAVLLSLRS---TCERLSVGAILVRDKRVIAGGYNGAVSGDDHCIDVGCYVVDGH 66

Query: 54  -----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE+ A+ +    G    GA  YVT  PC        C + +++ GI+++    +
Sbjct: 67  CLRTIHAEMNAVLQCSKFGIPTDGAEIYVTDFPCLQ------CTKSLLQAGIKKIYYMRN 120

Query: 106 DPDVRVSGRGLQWLSQK 122
             +   + R L+     
Sbjct: 121 YHNDDYAIRLLKRKKVA 137


>gi|56752247|ref|YP_172948.1| putative cytidine and deoxycytidylate deaminase [Synechococcus
           elongatus PCC 6301]
 gi|56687206|dbj|BAD80428.1| putative cytidine and deoxycytidylate deaminase [Synechococcus
           elongatus PCC 6301]
          Length = 168

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 17/120 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
            R+M+ A   +   +  T+    +  +IV  G ++  G          C HAE+ A+  A
Sbjct: 18  HRWMTIAYEQA--VIAGTAGEIPIGAVIVHQGHLLATGQNRRERDRDPCGHAEIIAIRAA 75

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                         YVTLEPC      P CA  II+  + +++   DDP        L  
Sbjct: 76  AARIGDWRLSDCHLYVTLEPC------PMCAGAIIQARLGQLIYAADDPKAGAIRSLLNL 129


>gi|326499113|dbj|BAK06047.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 186

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 18/119 (15%)

Query: 2   PVSSFD--ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
           P ++ D   +F+S A+  +   V      P    ++V++  V+               HA
Sbjct: 24  PEAAQDKEHKFLSIAVEEAYRAVDCGHGRP-FGAVVVRNDQVVASCHNMVLKNTDPTAHA 82

Query: 56  EVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           EV A+ EA       +      Y + EP       P C   +    I+R+V        
Sbjct: 83  EVTAIREACRKLGKIDLSDCEMYASCEPF------PMCFGAVRLSRIKRLVYGAKAEAA 135


>gi|319757836|gb|ADV69778.1| riboflavin biosynthesis protein RibD domain protein [Streptococcus
           suis JS14]
          Length = 219

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 55/150 (36%), Gaps = 18/150 (12%)

Query: 189 QSDAILVGIGTV-----------LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
            SDA+L G  TV            AD  ++   +   ++  P+ +I D    L     + 
Sbjct: 34  HSDAVLFGSNTVFTAFEKYPAETEADFEKI---ITSPEDPRPIGVIPDSRGILRSLHCLR 90

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNI---NIIYCDCRDLKKLLTILVGR-GVTSLLVE 293
               L  ++I+     P   L + ++      +   D  D +K   IL  + G      +
Sbjct: 91  NLGYLKEIVILVSTATPKEYLNYLEERHYPYIVSGNDHVDYEKAFQILHEQYGCKYRRTD 150

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            G  + +  + + L+D I L  S   +G  
Sbjct: 151 SGGGLTNKLLENGLIDEISLVISPCFVGNK 180


>gi|75910518|ref|YP_324814.1| bifunctional deaminase-reductase-like protein [Anabaena variabilis
           ATCC 29413]
 gi|75704243|gb|ABA23919.1| bifunctional deaminase-reductase-like protein [Anabaena variabilis
           ATCC 29413]
          Length = 172

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           D +  +  L       + + GGA + H F+    +D +IL    I++G  GIP  L++  
Sbjct: 88  DWEDFIKTLRTSNGRDIWLVGGAQLIHFFLKHGFIDELILSIHPIILGS-GIPLILKDPT 146

Query: 334 LEKNFMCVRRDYFGSDVCLEYIGKNL 359
           +E          F  D  L  I  NL
Sbjct: 147 IETKLQLQDVKSF--DTGLVQIFYNL 170


>gi|171743255|ref|ZP_02919062.1| hypothetical protein BIFDEN_02384 [Bifidobacterium dentium ATCC
           27678]
 gi|171278869|gb|EDT46530.1| hypothetical protein BIFDEN_02384 [Bifidobacterium dentium ATCC
           27678]
          Length = 213

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 7/129 (5%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK-KNINIIYC--DCRDLKKL 278
           +I D    LS       +    P++I+T        LAF   +NI+ I    D  DL + 
Sbjct: 74  VIPDTRGTLSWSD---DSGSAKPLVILTCEQVSEDYLAFLDSRNISWIATGRDRIDLARA 130

Query: 279 LTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
             IL    GV  + V GG  +   F+++ L+D + +     + G  G+ +  +   +   
Sbjct: 131 SEILNEEFGVERMAVVGGGTINGGFLDAGLLDEVSILIGPGIDGRKGMSAAFDGLPMNHR 190

Query: 338 FMCVRRDYF 346
            + ++ +  
Sbjct: 191 PVALKLESV 199


>gi|260904468|ref|ZP_05912790.1| hypothetical protein BlinB_04004 [Brevibacterium linens BL2]
          Length = 183

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 3/101 (2%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P  ++T  D P  +     ++ +I +         + + +  G   L + GG  VA  F+
Sbjct: 68  PTWVMTHRDLPKPSKDEVSEDPDIRFAKGSVADYYVEMCMATGDHDLWIMGGGGVAGQFV 127

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           +  L+D II + + + +G G    PL    L+   + V   
Sbjct: 128 DEGLLDEIITWTAPVTLGSGR---PLLPRRLDLELLDVDWK 165


>gi|319406589|emb|CBI80231.1| Cytosine/adenosine deaminase [Bartonella sp. 1-1C]
          Length = 150

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 43/146 (29%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG--VTAYGGCP--HAEVQALEEA--- 63
           M  AL  ++           V  +I     +I R          P  HAE++ +  A   
Sbjct: 6   MEIALLEAQLAKKQDE--IPVGAVITHGQTIIARAGNYIKTPHDPTGHAEMRVIRIACQI 63

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR-----GL 116
              E       YVTLEPC+       CA  I    IR +     DP              
Sbjct: 64  FKSERIPECDLYVTLEPCAM------CAATISFARIRNLYYATSDPKGGAIEHGPRFYQQ 117

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYL 142
           Q    +  +     E E    L  + 
Sbjct: 118 QTCHHRPNVYSGFKEKEASQLLKDFF 143


>gi|225155324|ref|ZP_03723817.1| CMP/dCMP deaminase zinc-binding [Opitutaceae bacterium TAV2]
 gi|224803931|gb|EEG22161.1| CMP/dCMP deaminase zinc-binding [Opitutaceae bacterium TAV2]
          Length = 163

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 53/151 (35%), Gaps = 42/151 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPS----VACLIVKDG----IVIGRGVTAY------- 49
           S+D  FM+ A+  S          P     V C++V  G     ++  G   Y       
Sbjct: 26  SWDDYFMATAVLLSTRS-------PCERLHVGCVLVSGGARPNRLVAAGYNGYLPGTPHV 78

Query: 50  --------GGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE  A+ +A   G    G  AYVT  PC +      CA+ +   GI 
Sbjct: 79  SRVRDGHEQATVHAEQNAVADAARRGSSLEGCVAYVTHFPCIN------CAKILAAAGIA 132

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            +    D  +  +       L+  GI + ++
Sbjct: 133 EIRFRSDYKNDPLVEP---LLADAGIAICKL 160


>gi|148974141|ref|ZP_01811674.1| hypothetical protein VSWAT3_13477 [Vibrionales bacterium SWAT-3]
 gi|145965838|gb|EDK31086.1| hypothetical protein VSWAT3_13477 [Vibrionales bacterium SWAT-3]
          Length = 89

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           +L +++  L  +G+ +L ++GG     +F+   LVD +I+    +V+G GG P    E  
Sbjct: 7   ELTQIIEDLNSKGLNNLYIDGGVT-IQNFLKEDLVDELIISTLPVVLG-GGAP-LFGELV 63

Query: 334 LEKNFMCVRRDYFGSDVC-LEYIGK 357
              +F       +  ++    Y+ K
Sbjct: 64  SPLDFTLKSVTTYLDEIVTTHYLRK 88


>gi|313888782|ref|ZP_07822443.1| putative ComE operon protein 2 [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845151|gb|EFR32551.1| putative ComE operon protein 2 [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 139

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 57/148 (38%), Gaps = 35/148 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV---------------TA 48
           S+D  FM      +      T     V C++V  D  +I  G                T 
Sbjct: 4   SWDEYFMEITEMVATRS---TCDRAFVGCVLVNSDNRIISTGYNGSVTGNPHCDEVGHTM 60

Query: 49  YGG----CPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
             G      HAE+ AL    + G   RGA AYVT  PC +      C + +I+ GIR ++
Sbjct: 61  RDGHCIATIHAEMNALLYCAKEGISVRGAKAYVTHFPCLN------CTKALIQAGIREII 114

Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
                   RV    ++ L +  +I+ ++
Sbjct: 115 Y---HEAYRVDDYAMELLEKNKVILKQI 139


>gi|188587446|ref|YP_001918991.1| CMP/dCMP deaminase zinc-binding [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179352133|gb|ACB86403.1| CMP/dCMP deaminase zinc-binding [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 154

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 52/158 (32%), Gaps = 43/158 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
            +D+ FM  A    +    L      V  ++V +  ++  G                   
Sbjct: 6   DWDSYFMEIAGTVKKRSTCLRR---QVGAVMVSERRILATGYNGAPQDLPHCSETGCLRE 62

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ ++   G   RG+T Y T  PCS       CA+ ++ 
Sbjct: 63  ELNVPSGERHEICRGLHAEQNAIIQSALHGVTTRGSTLYTTDFPCS------LCAKMLVN 116

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
            G+  +V     PD        + L++ GI V R    
Sbjct: 117 AGVSEIVAERSYPD----ELSKEVLAEAGIKVRRYGNE 150


>gi|254796483|ref|YP_003081319.1| tRNA-specific adenosine deaminase [Neorickettsia risticii str.
           Illinois]
 gi|254589716|gb|ACT69078.1| tRNA-specific adenosine deaminase [Neorickettsia risticii str.
           Illinois]
          Length = 139

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 47/144 (32%), Gaps = 22/144 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEAGEE 66
           M  A+  +R           V  ++V+ G VI     R         HAE+  + EA + 
Sbjct: 1   MELAISVARESDCEV----PVGAVLVRQGAVIASSGNRVFRDSDPTAHAEMLVIREAIQR 56

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ---W 118
                      YVTLEPC      P C   +    +  +     D        G      
Sbjct: 57  LGVKFLVDFELYVTLEPC------PMCMYAMSLSRVGTLCFAAYDEKRGAISNGCLGTGT 110

Query: 119 LSQKGIIVDRMMESEGKIFLHAYL 142
                ++ + +ME E K  L ++ 
Sbjct: 111 YFHVPMVYEGLMEDEAKELLSSFF 134


>gi|84385224|ref|ZP_00988256.1| putative deoxycytidylate deaminase [Vibrio splendidus 12B01]
 gi|86145748|ref|ZP_01064077.1| putative deoxycytidylate deaminase [Vibrio sp. MED222]
 gi|218676904|ref|YP_002395723.1| putative deoxycytidylate deaminase [Vibrio splendidus LGP32]
 gi|84379821|gb|EAP96672.1| putative deoxycytidylate deaminase [Vibrio splendidus 12B01]
 gi|85836447|gb|EAQ54576.1| putative deoxycytidylate deaminase [Vibrio sp. MED222]
 gi|218325172|emb|CAV27073.1| putative deoxycytidylate deaminase [Vibrio splendidus LGP32]
          Length = 147

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 38/125 (30%), Gaps = 28/125 (22%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP-----------------HAEVQALEEAGEEARGATAY 73
           V  +I K   ++  G   Y                     HAE  A+  A  +      +
Sbjct: 27  VGAVITKHNRIVSVGFNGYPHGVSDSADTDDREMKYLKTLHAEENAILFAKRDLDSCEVW 86

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS-----GRGLQWLSQKGIIVDR 128
           VT  PC      P CA  II+ GI  V       D                 Q G+ VD 
Sbjct: 87  VTHFPC------PNCAAKIIQTGISAVHCPEQSEDFLSRWGDKIKISQDMFEQAGVEVDW 140

Query: 129 MMESE 133
           +  ++
Sbjct: 141 LPLAD 145


>gi|121602446|ref|YP_989463.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Bartonella bacilliformis KC583]
 gi|120614623|gb|ABM45224.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Bartonella bacilliformis KC583]
          Length = 148

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 49/156 (31%), Gaps = 27/156 (17%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
           M ++      M  AL  ++           V  +I +   +I R   +    Y    HAE
Sbjct: 1   MTLTP-----MEIALLEAQLAA--EKGEVPVGAVITRGKTIISRAGNSIKKPYDPTGHAE 53

Query: 57  VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           ++ +  A E  +         YVTLEPC+       CA  I    I+ +     D     
Sbjct: 54  IRVIRMACETLKSERLPDCNLYVTLEPCAM------CAAAISFTRIQHLYYAASDSKGGA 107

Query: 112 SGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
              G +         +  +     E E    L  + 
Sbjct: 108 IEHGPRLYQQPTCHHRPDVYSGFKEREAIQLLKDFF 143


>gi|134119006|ref|XP_772006.1| hypothetical protein CNBN1840 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50254610|gb|EAL17359.1| hypothetical protein CNBN1840 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 205

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 23/118 (19%)

Query: 39  GIVIGRGVTAY-GGCPHAEVQALEE----AGEEARG-----------------ATAYVTL 76
           G+++  G +    G  HAE  AL       GE   G                  + Y T+
Sbjct: 76  GLILADGWSRQIAGNTHAEANALTNFRKVYGELLEGTDSTTSDLPPIENVLADVSCYATM 135

Query: 77  EPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
           EPCS      P CA  ++   +  V + V++P   V   G++ L    I V R+   E
Sbjct: 136 EPCSVRTSGGPSCALELVRSKVNSVYLGVEEPPDFVQCEGVRILQDGNIEVIRVSGLE 193


>gi|52841362|ref|YP_095161.1| cytidine/deoxycytidylate deaminase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|54294070|ref|YP_126485.1| hypothetical protein lpl1134 [Legionella pneumophila str. Lens]
 gi|54297084|ref|YP_123453.1| hypothetical protein lpp1129 [Legionella pneumophila str. Paris]
 gi|52628473|gb|AAU27214.1| cytidine/deoxycytidylate deaminase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|53750869|emb|CAH12280.1| hypothetical protein lpp1129 [Legionella pneumophila str. Paris]
 gi|53753902|emb|CAH15373.1| hypothetical protein lpl1134 [Legionella pneumophila str. Lens]
          Length = 154

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 17/102 (16%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64
           F+   +  +R +VG        ACLIV++G ++               HAEV A+  A  
Sbjct: 3   FIKRTIELARENVGHGGR--PFACLIVQNGKILAEATNTVAQTHDPTAHAEVNAIRIATA 60

Query: 65  ----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
               E       Y+   PC      P C   +  C  R+V+ 
Sbjct: 61  KLGCEHLYDCDFYILAHPC------PMCLAAMYYCSPRKVIF 96


>gi|255075667|ref|XP_002501508.1| cytidine/deoxycytidylate deaminase family protein [Micromonas sp.
           RCC299]
 gi|226516772|gb|ACO62766.1| cytidine/deoxycytidylate deaminase family protein [Micromonas sp.
           RCC299]
          Length = 164

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 18/106 (16%)

Query: 30  SVACLIVK--DGIVIGRGVT----AYGGCPHAEVQALEE-AGEE-----ARGATAYVTLE 77
            V  ++V    G V+               HAE++ + + A         R AT YVTLE
Sbjct: 18  PVGAVLVHTASGKVLSSHHNTVLAQDDPTAHAEMKCVRDGAKVLGGWRYLRDATLYVTLE 77

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           PC      P CA  ++   +  VV    +  +   G  +  +   G
Sbjct: 78  PC------PMCAGAVLNARLGAVVWGAPNKLIGADGSWISLMGDGG 117


>gi|219127140|ref|XP_002183799.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404522|gb|EEC44468.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 160

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 44/132 (33%), Gaps = 19/132 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLI--VKDGIVIGRGVTA----YGGCPHA 55
           P++     FM+ AL  S    G     P +  L+  V    ++G         Y    HA
Sbjct: 4   PINVIHEHFMTMALEQS-IVAGKCGEVP-IGALVPSVHRLQILGSSHNQVEQKYDASAHA 61

Query: 56  EVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+ +A    R       T Y TLEPC        C        + RVV    D  + 
Sbjct: 62  ELLAMRQAARRIRNWRLQSCTLYSTLEPC------VVCLASCQAFRVSRVVYGASDFRLG 115

Query: 111 VSGRGLQWLSQK 122
                +  L   
Sbjct: 116 AVHSHIALLDMA 127


>gi|195443952|ref|XP_002069651.1| GK11635 [Drosophila willistoni]
 gi|194165736|gb|EDW80637.1| GK11635 [Drosophila willistoni]
          Length = 160

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 23/114 (20%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE- 62
           A FM  AL  +R      +    V C+ V    VI RG            HAE   ++  
Sbjct: 2   AAFMEDALVEARRAR--DAGEVPVGCVFVYGDKVIARGGNEVNVYRNATRHAEFICIDAT 59

Query: 63  ----------AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
                     A +     +  VT+EPC        C+  +   G++ ++   ++
Sbjct: 60  LAYCREKHLPARQLFAEISVVVTVEPCIM------CSAALHTLGVKEIIYGCEN 107


>gi|170017672|ref|YP_001728591.1| deoxycytidylate deaminase [Leuconostoc citreum KM20]
 gi|169804529|gb|ACA83147.1| Deoxycytidylate deaminase [Leuconostoc citreum KM20]
          Length = 161

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 50/136 (36%), Gaps = 31/136 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
           S+D  F++ A   S      T T   V  +IV++  +I  G      G P          
Sbjct: 8   SWDQYFIAQAAILSTRS---TCTRLHVGAIIVQNNRIIASGYNGSVSGTPHCTEVGDLMV 64

Query: 54  --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  AL +A   G    GA  YVT  PC        C + +++ GI+++  
Sbjct: 65  DGHCVRAVHAEQNALMQAAQMGISVSGAEFYVTDVPCIQ------CTKLLLQAGIKKINF 118

Query: 103 CVDDPDVRVSGRGLQW 118
             D  +   +   L  
Sbjct: 119 MRDYHNNAFAEELLAQ 134


>gi|58261492|ref|XP_568156.1| hypothetical protein CNL06320 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|57230238|gb|AAW46639.1| hypothetical protein CNL06320 [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 209

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 56/188 (29%), Gaps = 26/188 (13%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAY----GGCPHAEVQ 58
             D  +M  ++                  +IV   +  ++  G  +         H EV 
Sbjct: 35  EVDLHWMRKSIEVMPPCHFNAY-----GSVIVNASNNELLCSGYNSQLEIGDPTEHGEVN 89

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS------ 112
           A+       + +  Y T EPC   G +      I++ G +RVV     PD+         
Sbjct: 90  AIRITEIWPQ-SWIYTTAEPCPMCGST------ILQSGFKRVVYGTSSPDLVSMGWTEYL 142

Query: 113 -GRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS 171
                +WL +  ++            +  ++    E    +  +  +      G    G 
Sbjct: 143 VSVRNKWLRKAAVVQPGFGGGRPVTQVVGHVG-NNETDPRLAWQFNLDYPCPEGCHRHGE 201

Query: 172 VPITGFIS 179
             I   ++
Sbjct: 202 EQICKPVA 209


>gi|109290173|ref|YP_656422.1| dCMP deaminase [Aeromonas phage 25]
 gi|104345846|gb|ABF72746.1| dCMP deaminase [Aeromonas phage 25]
          Length = 172

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 46/136 (33%), Gaps = 49/136 (36%)

Query: 31  VACLIVKDGIVIGRGV--------------------------------------TAYGGC 52
           V  +I KDG +I  G                                        +    
Sbjct: 24  VGAIISKDGRIISTGYNGTPAGCNHANCDDHAKKSGWLDLTVRLRGMYRQAHSEWSKANE 83

Query: 53  PHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
            HAE+ A+  A   G+   GA  +VT+ PC      P CA+ I + GI+RVV   ++   
Sbjct: 84  IHAELNAILYAAKTGQSIDGAEMHVTVSPC------PDCAKAIAQSGIKRVVY--NELYD 135

Query: 110 RVSGRGLQWLSQKGII 125
           R        L + G+ 
Sbjct: 136 RNPSGWDDILIKSGVE 151


>gi|328864076|gb|EGG13175.1| hypothetical protein MELLADRAFT_114818 [Melampsora larici-populina
           98AG31]
          Length = 196

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 73/226 (32%), Gaps = 63/226 (27%)

Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
            H  L   + +R  +TL  A S D  I       + ++G  S    H        I++  
Sbjct: 27  FHQNLNHDLSRRPFVTLTYAQSLDGKIAGVDGRQLRLSGNQSMKMTH--------IMISN 78

Query: 198 GTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
                D   L                                   A VI +T   +P   
Sbjct: 79  Q----DRQSL-------------------------------EEAGARVIPITNGMNP--- 100

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI----NSRLVDSIIL 313
                           DL+K+  +    G+  L++EGG+++  S +    +  +++ +++
Sbjct: 101 -----------SNQGLDLEKVFEVCKINGINRLMIEGGSSIISSCLNYTGDHPILNILVV 149

Query: 314 YRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
             S  ++GEG  + +   +  L      ++    GSD    Y   N
Sbjct: 150 TVSPYMVGEGLTVKTSNIDSRLSL-LRHIQTKILGSDAVFAYTSSN 194


>gi|328785680|ref|XP_392413.3| PREDICTED: deoxycytidylate deaminase-like isoform 1 [Apis
           mellifera]
          Length = 189

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 47/146 (32%), Gaps = 35/146 (23%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP-------------- 53
            FM+ A   ++           V   IV  D  ++G G                      
Sbjct: 31  YFMAIAFLSAKRSK---DPRTQVGACIVNEDKQIVGIGYNGMPKGCSDDEFSWCKNSNDS 87

Query: 54  ---------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                    HAEV A L +     +  T YV L PC+       CA+ II+ GI+ V   
Sbjct: 88  LKNKSLYVCHAEVNAILNKNCSSVKNCTIYVALFPCNE------CAKVIIQSGIKLVKYV 141

Query: 104 VDDPDVRVSGRGLQWLSQ-KGIIVDR 128
            D    +      + +    GII  +
Sbjct: 142 SDKHATKEKTIAAKKMFDAAGIIYSQ 167


>gi|313631859|gb|EFR99022.1| reductase family protein [Listeria seeligeri FSL N1-067]
          Length = 159

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           + + GGA +   F+  + +D  ++  + I++G+G    PL E   E      +  +FG  
Sbjct: 92  IWLVGGAKLVKQFLKEKAIDRFVITIAPIILGKG---IPLFEEDNEHALELEKVSHFGQF 148

Query: 350 VCLEY 354
             L Y
Sbjct: 149 AQLTY 153


>gi|289435840|ref|YP_003465712.1| hypothetical protein lse_2479 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289172084|emb|CBH28630.1| conserved hypothetical protein [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|313636214|gb|EFS02047.1| riboflavin biosynthesis protein RibD C- domain protein [Listeria
           seeligeri FSL S4-171]
          Length = 174

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           + + GGA +   F+  + +D  ++  + I++G+G    PL E   E      +  +FG  
Sbjct: 107 IWLVGGAKLVKQFLKEKAIDRFVITIAPIILGKG---IPLFEEDNEHALELEKVSHFGQF 163

Query: 350 VCLEY 354
             L Y
Sbjct: 164 AQLTY 168


>gi|315443623|ref|YP_004076502.1| cytosine/adenosine deaminase [Mycobacterium sp. Spyr1]
 gi|315261926|gb|ADT98667.1| cytosine/adenosine deaminase [Mycobacterium sp. Spyr1]
          Length = 146

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 17/134 (12%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEE--A 67
           A+  +R  +      P  A L   DG ++G G            HAE  A   AG +   
Sbjct: 10  AVEEARKGLAE-GGIPIGAALFAADGTLLGSGHNRRVQLDDPSLHAETDAFRNAGRQRGY 68

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           R  T   TL PC +      C+  + +  I  VV+     + R    G  WL++ G+ V 
Sbjct: 69  RSTTMVTTLSPCWY------CSGLVRQFNIGAVVIG----ESRTFTGGHHWLAEHGVKVT 118

Query: 128 RMMESEGKIFLHAY 141
            + +      +  +
Sbjct: 119 VVDDERCVTLMRDF 132


>gi|294678027|ref|YP_003578642.1| tRNA-specific adenosine deaminase [Rhodobacter capsulatus SB 1003]
 gi|294476847|gb|ADE86235.1| tRNA-specific adenosine deaminase [Rhodobacter capsulatus SB 1003]
          Length = 149

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 38/102 (37%), Gaps = 16/102 (15%)

Query: 30  SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
            V  +IV  DG VI R             HAE+ A+  A      E   G   YVTLEPC
Sbjct: 24  PVGAVIVAPDGRVIARAGNRTRELNDPTAHAEILAIRAACAALGSERLAGHDLYVTLEPC 83

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                 P CA  +    I R+     DP      +G +  + 
Sbjct: 84  ------PMCAAALANARIARLYYGAGDPKSGGVAQGPRIFAH 119


>gi|258543612|ref|YP_003189045.1| CMP/dCMP deaminase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634690|dbj|BAI00666.1| CMP/dCMP deaminase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637746|dbj|BAI03715.1| CMP/dCMP deaminase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640800|dbj|BAI06762.1| CMP/dCMP deaminase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643855|dbj|BAI09810.1| CMP/dCMP deaminase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646910|dbj|BAI12858.1| CMP/dCMP deaminase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649963|dbj|BAI15904.1| CMP/dCMP deaminase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652953|dbj|BAI18887.1| CMP/dCMP deaminase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256656007|dbj|BAI21934.1| CMP/dCMP deaminase [Acetobacter pasteurianus IFO 3283-12]
          Length = 151

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 21/134 (15%)

Query: 30  SVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
            V  +++  +G V+ +             HAE+  + EA     G++    T +V+LEPC
Sbjct: 24  PVGAVLLDSNGNVLAQAGNRVEELRDPSAHAEMLVMREAVQQRQGQKLADCTLFVSLEPC 83

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEG 134
                 P CA  +    + RVV    DP       G +   +        ++  + E E 
Sbjct: 84  ------PMCAAAMAHFRLGRVVFGAYDPKGGGVEHGARLPYRPETLHRMEVIGGVREQEA 137

Query: 135 KIFLHAYLTRQVEK 148
              L A+  +   +
Sbjct: 138 AEMLKAFFQKLRCR 151


>gi|127513983|ref|YP_001095180.1| CMP/dCMP deaminase, zinc-binding [Shewanella loihica PV-4]
 gi|126639278|gb|ABO24921.1| CMP/dCMP deaminase, zinc-binding [Shewanella loihica PV-4]
          Length = 149

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 48/152 (31%), Gaps = 31/152 (20%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----------- 51
           +S +  RF+  A   + W       +  V  +I ++  ++  G   Y             
Sbjct: 2   MSKWAIRFLQMAELVASWSK---DPSTQVGAVITENNRIVSLGFNGYPHGISDSAETDNR 58

Query: 52  ------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                   HAE  A+  A  +      +VT  PC      P CA  II+ G++ V     
Sbjct: 59  EMKLLKTLHAEENAILYAKRDLSSCEIWVTHFPC------PNCAAKIIQTGLKVVHSPQP 112

Query: 106 DPDVRVS-----GRGLQWLSQKGIIVDRMMES 132
             D                 Q G+ VD M   
Sbjct: 113 SDDFLSRWGDKIKVSQDMFDQAGVEVDWMQVE 144


>gi|78184835|ref|YP_377270.1| cytidine/deoxycytidylate deaminase family protein [Synechococcus
           sp. CC9902]
 gi|78169129|gb|ABB26226.1| tRNA-adenosine deaminase [Synechococcus sp. CC9902]
          Length = 147

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 21/136 (15%)

Query: 30  SVACLIVK-DGIVIGRGV----TAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
            VA +++  +G  IG G     T      HAE+ AL++A               VTLEPC
Sbjct: 18  PVAAVVLDANGRAIGHGRNRRETKQDPLGHAELVALQQAALVLGDWRFNQCCLIVTLEPC 77

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-----IIVDRMMESEG 134
                 P CA  +++  +  VV    D      G  +   +         ++  +ME+E 
Sbjct: 78  ------PMCAGALVQARMGTVVFGAHDRKRGGLGGTMNLATHTSAHHKMTVIGGVMEAEA 131

Query: 135 KIFLHAYLTRQVEKRS 150
              L  +  ++ ++  
Sbjct: 132 STQLEQWFKQRRQQNC 147


>gi|326804375|ref|YP_004327179.1| hypothetical protein PsPhPAKP1_gp034 [Pseudomonas phage PAK_P1]
 gi|290873788|gb|ADD64991.1| hypothetical protein ORF_0034 [Pseudomonas phage PAK_P1]
 gi|294998930|gb|ADF58244.1| putative dCMP deaminase [Pseudomonas phage JG004]
          Length = 138

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 43/114 (37%), Gaps = 28/114 (24%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----------------YGG 51
             +M AA  F++      S    V  ++VK   +I  G  A                   
Sbjct: 7   KAYMEAAEAFAKCSDSTRSK---VGAVLVKRNRIISCGYNALPEHLNGPLEDETGVTKAE 63

Query: 52  CPHAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
             HAE  AL     + E A+GAT +VT   C +      CA  ++E GI+ V  
Sbjct: 64  VRHAEENALRALIRSPESAQGATLFVTHSCCKN------CAISVVEAGIKVVYY 111


>gi|227432567|ref|ZP_03914548.1| competence protein ComEB [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227351675|gb|EEJ41920.1| competence protein ComEB [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 158

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 34/147 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
           S+   F++ A   S      T T   V  +IV+D  +I  G      G P          
Sbjct: 7   SWHQYFIAQAAILSTRS---TCTRLHVGAIIVRDNRIIASGYNGSVSGTPHCTEVGDLMV 63

Query: 54  --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  AL +A   G    G+  YVT  PC        C + +++ GI ++  
Sbjct: 64  DGHCIRAVHAEQNALMQAAKMGITIDGSEVYVTDVPCVQ------CTKLLLQAGINKIYF 117

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRM 129
             D  +   +    + L+QKGI + ++
Sbjct: 118 MRDYRNNTFAE---ELLAQKGIELKQV 141


>gi|153837138|ref|ZP_01989805.1| deoxycytidylate deaminase [Vibrio parahaemolyticus AQ3810]
 gi|149749555|gb|EDM60301.1| deoxycytidylate deaminase [Vibrio parahaemolyticus AQ3810]
          Length = 154

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 38/127 (29%), Gaps = 28/127 (22%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP-----------------HAEVQALEEAGEEARGATAY 73
           V  +I K   ++  G   Y                     HAE  A+  +  +  G   +
Sbjct: 27  VGAVITKQNRIVSVGFNGYPHGVSDSVDTDERELKYLKTLHAEENAILFSKRDLDGCDIW 86

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS-----GRGLQWLSQKGIIVDR 128
           VT  PC      P CA  II+ GI  V       D                 Q G+ VD 
Sbjct: 87  VTHFPC------PNCAAKIIQTGISHVHCPEQSEDFLSRWGDKIQVSQDMFDQAGVEVDW 140

Query: 129 MMESEGK 135
           +   +  
Sbjct: 141 LPLDDIN 147


>gi|123485888|ref|XP_001324597.1| RibD C-terminal domain containing protein [Trichomonas vaginalis
           G3]
 gi|121907482|gb|EAY12374.1| RibD C-terminal domain containing protein [Trichomonas vaginalis
           G3]
          Length = 276

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 63/192 (32%), Gaps = 31/192 (16%)

Query: 191 DAILVGIGTVL---ADDPELTCRLNGL--------QEHSPMRIILDPHFKLSLDSKIIK- 238
           DA +VG  TV       PEL      +            P  I++DP  KL      ++ 
Sbjct: 47  DACIVGRKTVKGFFVTTPELNPDETEVVDGDYIDDSAARPYLIVVDPAGKLGWKQNFVEM 106

Query: 239 --TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-----GRGVTSLL 291
                   + ++TE   P      R+  I+ I      +  LL +          V S+ 
Sbjct: 107 KPNTNFHVIEVLTEKASPQYRNYLRRSKISYIMVGKEQVDLLLLVKKLKDDFKVNVLSVH 166

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI-----PSPLEEGYLEKNFMCVRRDYF 346
             GGA +  +F+ + +VD + +  +    G          SP         F     D  
Sbjct: 167 --GGATINWTFLQAGIVDELSICMAAAADGANDTLTLFEKSPYALKDSPIEFELKSADKI 224

Query: 347 -----GSDVCLE 353
                GSD+ L 
Sbjct: 225 SNGGCGSDILLR 236


>gi|312129561|ref|YP_003996901.1| bifunctional deaminase-reductase domain protein [Leadbetterella
           byssophila DSM 17132]
 gi|311906107|gb|ADQ16548.1| bifunctional deaminase-reductase domain protein [Leadbetterella
           byssophila DSM 17132]
          Length = 177

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           +L +L+  L      ++  +GGA V +  +   L+D  I+    +++G G      ++G 
Sbjct: 94  NLSELVKQLKSEKGKNIYCDGGAEVINELLKHDLIDEFIISVIPVLLGNGTR--LFKDGR 151

Query: 334 LEKNFMCVRRDYFGSDVC-LEYIGK 357
            E+    V+   F + +  L YI K
Sbjct: 152 PEQTLEFVQAKTFETGLMQLHYIRK 176


>gi|307610712|emb|CBX00319.1| hypothetical protein LPW_20451 [Legionella pneumophila 130b]
          Length = 181

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           PVI+++        +   +   +II    +    L++ L  +G+  + ++GG  +   F+
Sbjct: 74  PVIVLSS-----KPIQIPEHLRHIITVSNQSPPDLVSELSLQGIQHVYLDGGITIQG-FL 127

Query: 304 NSRLVDSIILYRSQIVIGEG 323
            + LV+ + +    ++IG G
Sbjct: 128 QNNLVNEMTITVIPVLIGSG 147


>gi|330507120|ref|YP_004383548.1| riboflavin biosynthesis protein RibD C- domain-containing protein
           [Methanosaeta concilii GP-6]
 gi|328927928|gb|AEB67730.1| riboflavin biosynthesis protein RibD C- domain protein
           [Methanosaeta concilii GP-6]
          Length = 231

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 44/152 (28%), Gaps = 24/152 (15%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV---LALAFRKKNINIIYCDCRDLKKL 278
           +I D   ++     +         + +     P      L  R  +  +   D  DL+  
Sbjct: 76  VIPDSRGRIRTWHYLRTLPYWRHFVALCSKSTPDDYLEYLKQRHIDCIVTGEDHVDLRTA 135

Query: 279 LTILVGRGVTSLLV--EGGAAVAHSFINSRLVDSIILYRSQIVIGE-------------- 322
           L  L  R    + V  + G  +    +   LV+ + +     ++G               
Sbjct: 136 LEELCSRYAVRV-VRADAGGTLNGLLLRQGLVNEVSVLIYPSLVGGETTSSIFRAPDLPA 194

Query: 323 --GGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
              G P    EG +      ++ +    DV  
Sbjct: 195 AADGAPGQGAEGTIS--LQLMKTEKLKGDVMW 224


>gi|320158842|ref|YP_004191220.1| DCMP deaminase [Vibrio vulnificus MO6-24/O]
 gi|319934154|gb|ADV89017.1| DCMP deaminase [Vibrio vulnificus MO6-24/O]
          Length = 152

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 40/125 (32%), Gaps = 28/125 (22%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP-----------------HAEVQALEEAGEEARGATAY 73
           V  +I K   ++  G   Y                     HAE  A+  +  +  G   +
Sbjct: 27  VGAVITKQNRIVSVGFNGYPHGVSDSVDTDERELKYLKTLHAEENAILFSKRDLDGCEIW 86

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS-----GRGLQWLSQKGIIVDR 128
           VT  PC      P CA  II+ GI RV       D                +Q G+ V+ 
Sbjct: 87  VTHFPC------PNCAAKIIQTGISRVHCPEQSEDFLSRWGDKIAVSQDMFNQAGVEVNW 140

Query: 129 MMESE 133
           +   E
Sbjct: 141 LPVDE 145


>gi|70730992|ref|YP_260733.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Pseudomonas fluorescens Pf-5]
 gi|68345291|gb|AAY92897.1| RibD C-terminal domain [Pseudomonas fluorescens Pf-5]
          Length = 182

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 60/202 (29%), Gaps = 46/202 (22%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL--LRAQSDAILVGIGT---VLADDP 205
              + IA S D  I         +    S          A  D I++G  T   VL   P
Sbjct: 3   FGKVFIATSVDGFIARNDGAIDWLPSGESGEDYGYGAFMASVDGIVMGRATYDSVLGFTP 62

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
                        P+ ++L                        +  D P           
Sbjct: 63  --------WPFDKPV-VVLSRTL--------------------STQDVPQRLEGK----- 88

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             +         L+  L   G  +  ++GG  +  +F+ + L+D + L R  +++G G  
Sbjct: 89  --VRISALQPVALVAQLRAEGWRTAYIDGG-TLIQAFLQAGLIDEMTLTRVPVLLGTGR- 144

Query: 326 PSPLEEGYL-EKNFMCVRRDYF 346
             PL      + +  CV   ++
Sbjct: 145 --PLFGALPRDLHLRCVDSRWY 164


>gi|37676740|ref|NP_937136.1| deoxycytidylate deaminase [Vibrio vulnificus YJ016]
 gi|37201283|dbj|BAC97106.1| deoxycytidylate deaminase [Vibrio vulnificus YJ016]
          Length = 152

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 40/125 (32%), Gaps = 28/125 (22%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP-----------------HAEVQALEEAGEEARGATAY 73
           V  +I K   ++  G   Y                     HAE  A+  +  +  G   +
Sbjct: 27  VGAVITKQNRIVSVGFNGYPHGVSDSVDTDERELKYLKTLHAEENAILFSKRDLDGCEIW 86

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS-----GRGLQWLSQKGIIVDR 128
           VT  PC      P CA  II+ GI RV       D                +Q G+ V+ 
Sbjct: 87  VTHFPC------PNCAAKIIQTGISRVHCPEQSEDFLSRWGDKIAVSQDMFNQAGVEVNW 140

Query: 129 MMESE 133
           +   E
Sbjct: 141 LPVDE 145


>gi|271965977|ref|YP_003340173.1| cytosine/adenosine deaminase [Streptosporangium roseum DSM 43021]
 gi|270509152|gb|ACZ87430.1| cytosine/adenosine deaminase [Streptosporangium roseum DSM 43021]
          Length = 141

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 39/111 (35%), Gaps = 18/111 (16%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----TAYGGCPHAE- 56
           ++  D RF+  A+  +       + +P    L+   DG VI        T      H E 
Sbjct: 1   MTHDDERFLRRAIELA--GTARAAGDPPFGSLLTGPDGSVIAEDRNTVLTDSDITAHPEL 58

Query: 57  ---VQALEEAGEEARGA-TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                A  E   E   A T Y + +PC        CA  I   G+ RVV  
Sbjct: 59  KLARWAARELDPETAAATTMYTSCQPCGM------CAGAIERSGLGRVVFA 103


>gi|320164019|gb|EFW40918.1| tRNA-specific adenosine deaminase 2 [Capsaspora owczarzaki ATCC
          30864]
          Length = 307

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 1  MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTA----YGGCPH 54
          M V +   RFM +AL  +   +      P V C+IV  + G VIGRG            H
Sbjct: 12 MGVENLHERFMQSALDKAYEAL-EVGEVP-VGCVIVLRETGQVIGRGCNRTNETKNATRH 69

Query: 55 AEVQALEEA 63
          AE +A++E 
Sbjct: 70 AEFEAIDEV 78


>gi|195056037|ref|XP_001994919.1| GH13454 [Drosophila grimshawi]
 gi|193892682|gb|EDV91548.1| GH13454 [Drosophila grimshawi]
          Length = 160

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 51/166 (30%), Gaps = 27/166 (16%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE- 62
           A FM  AL  +R      +    V C+ + D  VI RG            HAE   ++  
Sbjct: 2   AAFMEEALVEARRAR--DAGEVPVGCVFIHDDKVIARGGNEVNVHRNATRHAEFICIDAT 59

Query: 63  ----------AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
                     A +     +  VT+EPC        C+  +    ++ ++   ++ D    
Sbjct: 60  LAYCREKRLPARQVFSEISVVVTVEPCIM------CSAALHTLAVKEIIYGCEN-DRFGG 112

Query: 113 GRGLQWLSQKG---IIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
              +   +  G    I   +   E    L  +          +  K
Sbjct: 113 KSVIDVAAVVGQRINITGGVRAEEAMTLLKEFYKGDNPAAPPVAKK 158


>gi|149408294|ref|YP_001294573.1| hypothetical protein ORF065 [Pseudomonas phage M6]
          Length = 153

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 26/120 (21%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTS-TNPSVACLIVK-DGIVIGRGVT------------- 47
           +S    R+    +  ++   G +   +  V  ++V+ +  V   G               
Sbjct: 1   MSERQDRWDRRYVGLAQHVAGWSKDPSTKVGAVLVRPNNSVASTGFNGFPPGHDDSPELY 60

Query: 48  -----AYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                 Y    HAE+ AL   G  A G T Y +  PC      P C +   + G++RV  
Sbjct: 61  ADRGYKYQHVVHAEINALNFLGSPATGFTLYTSF-PCC-----PNCMEAAGKAGVKRVAF 114


>gi|124003856|ref|ZP_01688704.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Microscilla marina ATCC 23134]
 gi|123990911|gb|EAY30378.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Microscilla marina ATCC 23134]
          Length = 186

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
             L  +    + + GG  +  SF+N  LVD +I+  + +VIGEG
Sbjct: 110 HRLKQQTGKDIWLVGGGNLLTSFLNEGLVDEMIIAIAPVVIGEG 153


>gi|206561430|ref|YP_002232195.1| putative guanine/cytidine deaminase [Burkholderia cenocepacia
           J2315]
 gi|198037472|emb|CAR53408.1| putative guanine/cytidine deaminase [Burkholderia cenocepacia
           J2315]
          Length = 159

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 52/156 (33%), Gaps = 24/156 (15%)

Query: 12  SAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE-- 65
             A+   R     T        ++V+DG V+ R V           HAE+QA+  A +  
Sbjct: 17  RLAMENVRERK--TWP---FGAVLVRDGKVLARSVNEVEATCDPSAHAEMQAVRAASKAL 71

Query: 66  ---EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
              +  GA  Y +  PCS       C   +   G+  V     + D           + +
Sbjct: 72  GSTDLSGAVMYASGYPCSM------CLSAMYLAGVSEVYYAYSNEDGEPYDLS----AAR 121

Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAV 158
           G +       E ++ L  +  R      +   ++A 
Sbjct: 122 GYVEIARPLHEREMKLVYHRARDDGPDLYEAWQVAQ 157


>gi|88857140|ref|ZP_01131783.1| hypothetical protein PTD2_01231 [Pseudoalteromonas tunicata D2]
 gi|88820337|gb|EAR30149.1| hypothetical protein PTD2_01231 [Pseudoalteromonas tunicata D2]
          Length = 186

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           D+  L+  L   G     ++GG     +FIN +L++ +I+ ++ I++GEG    PL  G 
Sbjct: 104 DILALINKLASDGYQHAYIDGG-KTITAFINQQLINEMIITKAPIILGEG---IPLF-GK 158

Query: 334 LEKNFMCVRRD 344
           +EK    +  +
Sbjct: 159 IEKPIKLLEAN 169


>gi|84386505|ref|ZP_00989532.1| pyrimidine reductase [Vibrio splendidus 12B01]
 gi|84378610|gb|EAP95466.1| pyrimidine reductase [Vibrio splendidus 12B01]
          Length = 177

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 74/216 (34%), Gaps = 48/216 (22%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPIT------GFISKNQVHLLRAQSDAILVGIGTVLAD 203
               + IA S D  I     G   +       G       H  R   DA+++G  T+  D
Sbjct: 1   MSNIVFIATSLDGYIADKQGGLDWLQAIPNPDGDDMGYNAHTDR--IDALVMGRNTM--D 56

Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
                              +L                   PV +++   + V      K 
Sbjct: 57  M------------------VLSFGIDWPYS---------KPVYVLSNTLNEVPQELEGK- 88

Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
               ++    +L++++  L  +G+ +L ++GG     +F+   L+D +I+    +V+G G
Sbjct: 89  ----VFLMKGELEQIVADLNNKGLKNLYIDGG-ITIQNFLKEDLIDELIISTIPVVLGGG 143

Query: 324 GIPSPLEEGYLEK-NFMCVRRDYFGSDVC-LEYIGK 357
              SPL    +   NF       +  ++    Y+ K
Sbjct: 144 ---SPLFGDLVSPVNFTLKGVTTYLDEIVQTHYLRK 176


>gi|260463212|ref|ZP_05811414.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
           opportunistum WSM2075]
 gi|259031062|gb|EEW32336.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
           opportunistum WSM2075]
          Length = 178

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 60/174 (34%), Gaps = 37/174 (21%)

Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA---QSDAILVGIGTVLADDPELTC 209
            + IA S D  I         +      ++ H +     + DA+++G GT  A       
Sbjct: 5   HVFIATSLDGFIARDDGEIEWLLERDDPSENHGMDDFIEKVDAVIMGRGTFEA------V 58

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
           R                      D +         V+  T  D PV      +     + 
Sbjct: 59  R----------------------DVRPWFYRRPVLVLSATLADQPVPDELEGR-----VR 91

Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
              +  ++ +T+L   G   + V+GG  V  SF+   L+D + + R  I++G G
Sbjct: 92  FSGKSPEQAMTMLEAEGCRHVYVDGG-LVIQSFLQLGLIDDMTITRVPILLGSG 144


>gi|84501544|ref|ZP_00999716.1| hypothetical protein OB2597_15120 [Oceanicola batsensis HTCC2597]
 gi|84390165|gb|EAQ02724.1| hypothetical protein OB2597_15120 [Oceanicola batsensis HTCC2597]
          Length = 154

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 42/120 (35%), Gaps = 22/120 (18%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGR--GVTAYGGCP--HA 55
           MP +S    FM  AL               V  ++V   G V+ R    T     P  HA
Sbjct: 4   MPFTS----FMHLALD--EARAAAARGEVPVGAVLVSPGGEVVARDGNRTREKADPSAHA 57

Query: 56  EVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+  +  A      E   G   YVTLEPC      P CA  I    I R+     DP   
Sbjct: 58  EMLVIRAACAAAGSERLPGHDLYVTLEPC------PMCAAVIGAARIARLYYGAADPKSG 111


>gi|254773714|ref|ZP_05215230.1| cytidine/deoxycytidylate deaminase [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 177

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 36/102 (35%), Gaps = 17/102 (16%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA-- 63
           F    +  +R +V         A +IV+DG V+               HAE+ A+  A  
Sbjct: 15  FARRTIDLARQNVAEGGR--PFATVIVQDGEVLAESANKAAQTNDPTAHAEILAIRAACL 72

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
               E    AT YV   PC      P C   +  C  R VV 
Sbjct: 73  KLGTEHLVDATIYVLAHPC------PMCLGALYYCSPREVVF 108


>gi|237651567|ref|YP_002899037.1| putative deoxycytidylate deaminase [Roseophage DSS3P2]
 gi|220898037|gb|ACL81295.1| putative deoxycytidylate deaminase [Silicibacter phage DSS3phi2]
          Length = 142

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 48/143 (33%), Gaps = 28/143 (19%)

Query: 9   RFMSAALRFSRW-HVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
           RF   AL  +          +  V  +I++ D  +   G   +                 
Sbjct: 4   RFDEWALGLAEAVSKRSRDPSTKVGAVIIRPDKTIASMGYNGFPRTMEDKEEWWSDRPQK 63

Query: 54  -----HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                H E+ AL  A E   G T Y T  PC  +     CA+ II  GI RVV    +  
Sbjct: 64  YSRVIHGEMNALLNAKEPVLGMTLYCT-HPCCEH-----CAKHIIAAGITRVVFGTSEEI 117

Query: 109 VRVSG--RGLQWLSQKGIIVDRM 129
            +     + L+     G+ V  +
Sbjct: 118 RQRFDIAKSLELFEDCGVEVIEL 140


>gi|195391484|ref|XP_002054390.1| GJ24425 [Drosophila virilis]
 gi|194152476|gb|EDW67910.1| GJ24425 [Drosophila virilis]
          Length = 160

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 51/166 (30%), Gaps = 27/166 (16%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE- 62
           A FM  AL  +R      +    V C+ V +  VI RG            HAE   ++  
Sbjct: 2   AAFMEDALVEARRAR--DAGEVPVGCVFVHNDKVIARGGNEVNVHRNATRHAEFICIDAT 59

Query: 63  ----------AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
                     A +     +  VT+EPC        C+  +    ++ ++   ++ D    
Sbjct: 60  LAYCREKRLPARQVFSEISVVVTVEPCIM------CSAALHTLAVKEIIYGCEN-DRFGG 112

Query: 113 GRGLQWLSQKG---IIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
              +   +  G    I   +   E    L  +          +  K
Sbjct: 113 KTVIDVAAVVGQRINITGGVRSEEAMALLKEFYKGDNPAAPPVAKK 158


>gi|290771180|emb|CAY80744.2| Tad2p [Saccharomyces cerevisiae EC1118]
          Length = 250

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 66/198 (33%), Gaps = 36/198 (18%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLI--VKDGIVIGRGVTAYG----GCPHAEVQALEE 62
           + M  A+R +R+ +    T   VAC+      G V+  G+        G  HAE   +++
Sbjct: 5   KHMRTAVRLARYALDHDET--PVACIFEHTPTGQVMAYGMNDTNKSLTGVAHAEFMGIDQ 62

Query: 63  --AGEEARGA-------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP------ 107
             A   +RG        T YVT+EPC        CA  + + GI +VV    +       
Sbjct: 63  IKAMLGSRGVVDVFKDITLYVTVEPCIM------CASALKQLGIGKVVFGCGNERFGGNG 116

Query: 108 -----DVRVSGRGLQWLSQKGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
                +        +  S  G   +  ++  E  + L  +  RQ E+      K     D
Sbjct: 117 TVLSVNHDTCTLVPKNNSAAGYESIPGILRKEAIMLLRYFYVRQNERAPKPRSKSDRVLD 176

Query: 162 NMIGMAGCGSVPITGFIS 179
                            +
Sbjct: 177 -KNTFPPMEWSKYLNEEA 193


>gi|256271071|gb|EEU06172.1| Tad2p [Saccharomyces cerevisiae JAY291]
          Length = 250

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 66/198 (33%), Gaps = 36/198 (18%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLI--VKDGIVIGRGVTAYG----GCPHAEVQALEE 62
           + M  A+R +R+ +    T   VAC+      G V+  G+        G  HAE   +++
Sbjct: 5   KHMRTAVRLARYALDHDET--PVACIFEHTPTGQVMAYGMNDTNKSLTGVAHAEFMGIDQ 62

Query: 63  --AGEEARGA-------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP------ 107
             A   +RG        T YVT+EPC        CA  + + GI +VV    +       
Sbjct: 63  IKAMLGSRGVVDVFKDITLYVTVEPCIM------CASALKQLGIGKVVFGCGNERFGGNG 116

Query: 108 -----DVRVSGRGLQWLSQKGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
                +        +  S  G   +  ++  E  + L  +  RQ E+      K     D
Sbjct: 117 TVLSVNHDTCTLVPKNNSAAGYESIPGILRKEAIMLLRYFYVRQNERAPKPRSKSDRVLD 176

Query: 162 NMIGMAGCGSVPITGFIS 179
                            +
Sbjct: 177 -KNTFPPMEWSKYLNEEA 193


>gi|158428667|pdb|2HVV|A Chain A, Crystal Structure Of Dcmp Deaminase From Streptococcus
           Mutans
 gi|158428668|pdb|2HVV|B Chain B, Crystal Structure Of Dcmp Deaminase From Streptococcus
           Mutans
 gi|158428669|pdb|2HVW|A Chain A, Crystal Structure Of Dcmp Deaminase From Streptococcus
           Mutans
 gi|158428670|pdb|2HVW|B Chain B, Crystal Structure Of Dcmp Deaminase From Streptococcus
           Mutans
 gi|158428671|pdb|2HVW|C Chain C, Crystal Structure Of Dcmp Deaminase From Streptococcus
           Mutans
          Length = 184

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 43/132 (32%), Gaps = 31/132 (23%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----------------- 51
            FM+ A   S+      +    V  ++VK+  +I  G                       
Sbjct: 44  YFMANAELISKRSTCNRA---YVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHC 100

Query: 52  --CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
               HAE+ AL +    G  A     YVT  PC +      C + +++ G++++      
Sbjct: 101 IRTVHAEMNALIQCAKEGISANNTEIYVTHFPCIN------CTKALLQAGVKKITYNTAY 154

Query: 107 PDVRVSGRGLQW 118
                +   +  
Sbjct: 155 RIHPFAIELMTQ 166


>gi|157376789|ref|YP_001475389.1| CMP/dCMP deaminase, zinc-binding [Shewanella sediminis HAW-EB3]
 gi|157319163|gb|ABV38261.1| CMP/dCMP deaminase, zinc-binding [Shewanella sediminis HAW-EB3]
          Length = 145

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 26/116 (22%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----------- 51
           ++ +  RF+  A   + W       +  V  +I ++  ++  G   Y             
Sbjct: 2   MTKWAIRFLQMAELVASWSK---DPSTQVGAVITENNRIVSLGFNGYPHGISDSAETDNR 58

Query: 52  ------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                   HAE  A+  A  +      +VT  PC      P CA  II+ G+R V 
Sbjct: 59  EMKLLKTLHAEENAILHAKRDLSSCEIWVTHFPC------PNCAAKIIQTGLRAVH 108


>gi|319898379|ref|YP_004158472.1| Cytosine/adenosine deaminase [Bartonella clarridgeiae 73]
 gi|319402343|emb|CBI75882.1| Cytosine/adenosine deaminase [Bartonella clarridgeiae 73]
          Length = 150

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 46/146 (31%), Gaps = 22/146 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA--- 63
           M  AL  ++           V  +I     +I R      T Y    HAE++ +  A   
Sbjct: 6   MEIALLEAQSAKKQAE--IPVGAVITHGKTIIARAGNYIKTPYDPTGHAEMRVIRIACQI 63

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW--- 118
              E       YVTLEPC+       CA  I    IR +     D        G ++   
Sbjct: 64  FKSERIPECDLYVTLEPCAM------CAAAISFARIRNLYYATQDSKGGAIEHGPRFYQQ 117

Query: 119 --LSQKGIIVDRMMESEGKIFLHAYL 142
                +  +     E E  + L  + 
Sbjct: 118 PTCHHRPNVYSGFKEREATLLLKDFF 143


>gi|313203820|ref|YP_004042477.1| bifunctional deaminase-reductase domain protein [Paludibacter
           propionicigenes WB4]
 gi|312443136|gb|ADQ79492.1| bifunctional deaminase-reductase domain protein [Paludibacter
           propionicigenes WB4]
          Length = 177

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           +L  L+  L       +  +GGA +    + + L+D  I+  + I +G G      ++G 
Sbjct: 94  NLSDLIQELKSTDGKDIYCDGGAEIVTELMKNDLIDEFIISVAPIFLGNGTR--LFKDGR 151

Query: 334 LEKNFMCVRRDYFGSDVC-LEYIGK 357
            E+    V  + F + +  L+Y  K
Sbjct: 152 PEQELELVYSNTFDTGLAQLKYRRK 176


>gi|311277409|ref|YP_003939640.1| CMP/dCMP deaminase zinc-binding protein [Enterobacter cloacae SCF1]
 gi|308746604|gb|ADO46356.1| CMP/dCMP deaminase zinc-binding protein [Enterobacter cloacae SCF1]
          Length = 151

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 44/121 (36%), Gaps = 16/121 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVT---AYGGCPHAEVQALEEAGE 65
           +M  A+  +   +      P     IV++G  V+    T         HAE+ A+ EA +
Sbjct: 3   YMKLAVDATIHGMENNIGGP-FGATIVRNGEVVVAISNTMTRDTDPSAHAELVAIREACK 61

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                +      Y T EPC      P C   II  GI++V  C    D    G   Q L 
Sbjct: 62  KRGTFDLSDCEIYATCEPC------PMCVAVIIWTGIKKVYYCSTHHDAHTHGFSDQHLR 115

Query: 121 Q 121
            
Sbjct: 116 D 116


>gi|269793794|ref|YP_003313249.1| tRNA-adenosine deaminase [Sanguibacter keddieii DSM 10542]
 gi|269095979|gb|ACZ20415.1| tRNA-adenosine deaminase [Sanguibacter keddieii DSM 10542]
          Length = 147

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 59/146 (40%), Gaps = 21/146 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAGE- 65
           M  A+  +R  +  T   P  A ++  DG VIGRG  A    G P  HAEV AL EA + 
Sbjct: 1   MGLAIDEARLAL-ETGDVPVGAVVVGPDGTVIGRGHNAREAAGDPTAHAEVLALREAAQT 59

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS- 120
                  G T  VTLEPC        CA   +   + R+V+   D     +G     +  
Sbjct: 60  LGEWRLTGCTLVVTLEPC------VMCAGATMLARVPRLVLGAWDDKAGATGSMWDLVRD 113

Query: 121 ----QKGIIVDRMMESEGKIFLHAYL 142
                +  +V  + E+E    L  + 
Sbjct: 114 RRSTHRVEVVGGVREAECAALLLDFF 139


>gi|328876450|gb|EGG24813.1| CMP/dCMP deaminase [Dictyostelium fasciculatum]
          Length = 251

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 40/120 (33%), Gaps = 21/120 (17%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY--GGCPHAEVQALEEA- 63
             +M  AL+ ++   G          +IV  +G +   GV         H E+ A+    
Sbjct: 62  ENWMKLALQITKAVNG------RFGAVIVNENGTLACTGVNQGKINRINHGEIVAINNCS 115

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                    G T Y T EPC      P C   I+    + VV      ++    R L  L
Sbjct: 116 NLYTKNMFEGWTLYTTGEPC------PMCQAAIMWTKFKTVVFGSYVSNMYC-ERCLNQL 168


>gi|315304838|ref|ZP_07874988.1| riboflavin biosynthesis protein RibD C- domain protein [Listeria
           ivanovii FSL F6-596]
 gi|313626791|gb|EFR95774.1| riboflavin biosynthesis protein RibD C- domain protein [Listeria
           ivanovii FSL F6-596]
          Length = 174

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           + + GGA +   F+  + +D  ++  + I++G+G    PL E   E      +   FG  
Sbjct: 107 IWLVGGAKLVKQFLKEKAIDRFVITVAPIILGKG---IPLFEEDKEHALELEKVSQFGQF 163

Query: 350 VCLEY 354
             L Y
Sbjct: 164 AQLTY 168


>gi|310777941|ref|YP_003966274.1| CMP/dCMP deaminase zinc-binding protein [Ilyobacter polytropus DSM
           2926]
 gi|309747264|gb|ADO81926.1| CMP/dCMP deaminase zinc-binding protein [Ilyobacter polytropus DSM
           2926]
          Length = 159

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 18/111 (16%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRG----VTAYGGCPHAEVQALEE 62
            +++   +  S   V   S N     L+V K+G ++       VT      HAE    + 
Sbjct: 4   EKYLRRCIEISEESV--ASGNNPFGALLVDKEGNILIESGNIEVTEKDITGHAETTVAKL 61

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           AG++         T Y T EPC        C   I    I  VV  + +  
Sbjct: 62  AGKKYSKEFLWETTLYTTAEPCCM------CTGAIYWANIGNVVYGISEKK 106


>gi|23009674|ref|ZP_00050635.1| COG0262: Dihydrofolate reductase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 185

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 7/126 (5%)

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTS 289
             DS        AP+ +VT +  PV      +  I  +     + +++ +     R VT 
Sbjct: 61  DPDSYAEDYEFQAPIFVVTHHPLPVPPRRNERLWIEFVTDGVEEAVRRAVEAAGDRDVTF 120

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           +   GGA +    + + LVD + +    +++G G     L +G +      V  D  G  
Sbjct: 121 V---GGADLFRQLLAADLVDELAVDVMPVLLGGGVR---LFDGGVPATLEKVSVDEVGVR 174

Query: 350 VCLEYI 355
             L Y 
Sbjct: 175 TALRYR 180


>gi|325118493|emb|CBZ54045.1| hypothetical protein NCLIV_038260 [Neospora caninum Liverpool]
          Length = 487

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 47/147 (31%), Gaps = 44/147 (29%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPS---VACLIVKDGIVIGRGVTAYGGCP-------- 53
           S+D  FM          +  T +N     V  ++ +   VI  G                
Sbjct: 329 SWDTYFMRLTF------LASTRSNCMKRRVGAIVARGNRVIATGYNGTPSQAANCNAGGC 382

Query: 54  --------------------HAEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQFI 92
                               HAE  AL EAG + A   T YVT  PC        CA+ +
Sbjct: 383 ARCNDPNVSQGRALEACECIHAEANALLEAGRDRAMNGTLYVTCLPCLG------CAKLV 436

Query: 93  IECGIRRVVVCVDDPDVRVSGRGLQWL 119
           ++  I+ VV   +  +   +   L  +
Sbjct: 437 VQSAIQTVVYAEEYDNRSGALDLLTRM 463


>gi|162135105|ref|YP_001595846.1| hypothetical protein [Pseudomonas phage YuA]
 gi|161513952|emb|CAO77778.1| hypothetical protein [Pseudomonas phage YuA]
          Length = 153

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 48/143 (33%), Gaps = 29/143 (20%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTS-TNPSVACLIVK-DGIVIGRGVT------------- 47
           ++    ++    +  ++   G +   +  V  ++V+ +  V   G               
Sbjct: 1   MNERQTKWDRRYVGLAQHVAGWSKDPSTKVGAVLVRPNNSVASTGFNGFPPGHDDSPELY 60

Query: 48  -----AYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV-- 100
                 Y    HAEV AL   G  A G T Y +  PC      P C +   E G++RV  
Sbjct: 61  ADRGYKYQHVVHAEVNALNFLGSPATGFTLYTSF-PCC-----PNCMEAAGEAGVKRVAF 114

Query: 101 -VVCVDDPDVRVSGRGLQWLSQK 122
            V+     D        Q + + 
Sbjct: 115 PVIDYAGRDPGWVAEWNQRIDEA 137


>gi|145299654|ref|YP_001142495.1| cytidine/deoxycytidylate deaminase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852426|gb|ABO90747.1| cytidine/deoxycytidylate deaminase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 172

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 20/118 (16%)

Query: 1   MPVSSFDARFMSAALRFS---RWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCP 53
           +  +     ++  AL+ +   R   G        A L+V++  ++               
Sbjct: 17  LTANPSHQEWLEQALQLALQNRQRGGR-----PFAALLVQNDRLVAGAVNAMHLEGDPTR 71

Query: 54  HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           HAE++AL +A +     GA  Y +  PC      P C   ++  GIR V    D+ D 
Sbjct: 72  HAELEALRQASQSGPLAGAIIYASGHPC------PMCLSALVMNGIRAVYYAFDNHDA 123


>gi|169828565|ref|YP_001698723.1| hypothetical protein Bsph_3080 [Lysinibacillus sphaericus C3-41]
 gi|168993053|gb|ACA40593.1| Hypothetical ywjB protein [Lysinibacillus sphaericus C3-41]
          Length = 177

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
            +   + +++  +  D     K L    G  +  +   GGA +  +F+  +LVD  I+  
Sbjct: 78  KSQTGKDEHVEFVQGDVVAFTKKLKQQSGAKIWMV---GGAHILDAFLQEQLVDEWIITI 134

Query: 316 SQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           +  +IG  GIP   +    E +   +    +G  V + Y
Sbjct: 135 TPHLIGA-GIPLFKQPRPFE-DLKLLETKRYGQMVQMHY 171


>gi|115746630|ref|XP_785961.2| PREDICTED: similar to DCMP deaminase, partial [Strongylocentrotus
           purpuratus]
 gi|115963430|ref|XP_001194861.1| PREDICTED: similar to DCMP deaminase, partial [Strongylocentrotus
           purpuratus]
          Length = 122

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 44/128 (34%), Gaps = 32/128 (25%)

Query: 31  VACLIVKD-GIVIGRGV-----------------------TAYGGCPHAEVQAL-EEAGE 65
           V   IV D   ++G G                        T      HAE+ A+  +   
Sbjct: 1   VGACIVNDENKIVGIGYNGMPRGCSDEALPWQRKNDDWLETKIPYVCHAEMNAVMNKNCA 60

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD-DPDVRVSGRGLQWLSQKGI 124
             +G T YV L PC+       C + I++ GI+ VV   D   D        + L   GI
Sbjct: 61  SVKGCTIYVALFPCNE------CTKVIMQSGIKEVVYMSDTKHDKPSMVASRRLLDAVGI 114

Query: 125 IVDRMMES 132
               + +S
Sbjct: 115 PYRYVDQS 122


>gi|58271532|ref|XP_572922.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134115302|ref|XP_773949.1| hypothetical protein CNBH4010 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50256577|gb|EAL19302.1| hypothetical protein CNBH4010 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57229181|gb|AAW45615.1| expressed protein [Cryptococcus neoformans var. neoformans JEC21]
          Length = 224

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 57/202 (28%), Gaps = 39/202 (19%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAY----GGCPHAEVQ 58
             D  +M  ++                  +IV   +  ++  G  +         H EV 
Sbjct: 35  EVDLHWMRKSIEVMPPCHFNAY-----GSVIVNASNNELLCSGYNSQLEIGDPTEHGEVN 89

Query: 59  ALEEA-------GEEARGAT-------AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
           A+          G      T        Y T EPC   G +      I++ G +RVV   
Sbjct: 90  AIRNCVKKYTELGWTPAQITEIWPQSWIYTTAEPCPMCGST------ILQSGFKRVVYGT 143

Query: 105 DDPD-------VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
             PD         +     +WL +  ++      +     +  ++    E    +  +  
Sbjct: 144 SSPDLVGMGWTEYLVSVRNKWLRKAAVVQPGFGGNRPVTQVVGHVG-NNETDPRLAWQFN 202

Query: 158 VSQDNMIGMAGCGSVPITGFIS 179
           +      G    G   I   ++
Sbjct: 203 LDYPCPEGCHRHGEEQICKPVA 224


>gi|332028253|gb|EGI68300.1| tRNA-specific adenosine deaminase 2 [Acromyrmex echinatior]
          Length = 175

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 26/164 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE--- 62
           +M  AL+ +     L +    V CL + +  +I  G            HAE+  +++   
Sbjct: 6   WMDVALQKAEES--LKAGEVPVGCLFIYNNQIIATGNNTVNETCNATRHAEINCIDQVLK 63

Query: 63  -AGEEA-------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
              E++       R     VT+EPC        C   +++  I  +V    +        
Sbjct: 64  FCKEKSMDYEMVFRNLDVIVTVEPCIM------CMSALLQLQIHSIVYGCANDRFGGCIS 117

Query: 115 GLQ---WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
            L+   +   K II   +   E    L  +            +K
Sbjct: 118 VLEVPKFYDSKIIIQGNVKGEEAMRLLQDFYKGVNPNAPESKVK 161


>gi|154687571|ref|YP_001422732.1| YwjB [Bacillus amyloliquefaciens FZB42]
 gi|154353422|gb|ABS75501.1| YwjB [Bacillus amyloliquefaciens FZB42]
          Length = 176

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 5/91 (5%)

Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
             L  R +++  I+ +  D    +  L  R    + + GG+ + H  +  +LVD  I+  
Sbjct: 80  RTLTGRTEHVRFIHEEPADF---IKALKRREGKRIWIVGGSDLLHPVLEEKLVDEFIIQI 136

Query: 316 SQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
           + +++G G   S  + G  E          +
Sbjct: 137 APVLLGRG--ISLFKPGDRETGLKLTDVRRY 165


>gi|116617577|ref|YP_817948.1| deoxycytidylate deaminase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096424|gb|ABJ61575.1| Deoxycytidylate deaminase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 158

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 58/162 (35%), Gaps = 34/162 (20%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
           S+   F++ A   S      T T   V  +IV+D  +I  G      G P          
Sbjct: 7   SWHQYFIAQAAILSTRS---TCTRLHVGAIIVRDHRIIASGYNGSVSGTPHCTEVGDLMV 63

Query: 54  --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  AL +A   G    G+  YVT  PC        C + +++ GI ++  
Sbjct: 64  DGHCIRAVHAEQNALMQAAKMGITIDGSEVYVTDVPCVQ------CTKLLLQAGISKIYF 117

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
             D  +   +    + L+QKGI + ++  S            
Sbjct: 118 MRDYRNNTFAE---ELLAQKGIELKQVPLSALTAQQIDMNQF 156


>gi|295692075|ref|YP_003600685.1| dcmp deaminase [Lactobacillus crispatus ST1]
 gi|295030181|emb|CBL49660.1| dCMP deaminase [Lactobacillus crispatus ST1]
          Length = 159

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 54/144 (37%), Gaps = 34/144 (23%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------------- 53
             FM  AL  ++      +    V  ++VK+  +IG G      G P             
Sbjct: 9   QYFMMQALVIAQRSTCNRA---LVGSVLVKNNRIIGTGYNGSVSGQPHCDDVGHQMVDGH 65

Query: 54  -----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                H+E+ A+ +    G        YVT  PC +      C + +++ G++++    D
Sbjct: 66  CVRTIHSEMNAIIQCAKFGVSTENTEIYVTHFPCYN------CCKSLLQAGVKKINYYFD 119

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRM 129
             D  ++   +Q L    +  +++
Sbjct: 120 YRDNPLA---MQLLHDSEVPYEQI 140


>gi|224002957|ref|XP_002291150.1| hypothetical protein THAPSDRAFT_34714 [Thalassiosira pseudonana
           CCMP1335]
 gi|220972926|gb|EED91257.1| hypothetical protein THAPSDRAFT_34714 [Thalassiosira pseudonana
           CCMP1335]
          Length = 171

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 46/142 (32%), Gaps = 38/142 (26%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-------G-------------IVIGRGV---- 46
           M  AL+ ++           +  +IV++       G              ++ R      
Sbjct: 1   MELALQEAQNAW--DKGEVPIGAVIVRELLSNATAGSTVMNNLHATRSFQILSRAHNLVE 58

Query: 47  TAYGGCPHAEVQALEEAGEEARG------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           T      HAE+ AL +   + +       +T Y TLEPC      P C   I    I  +
Sbjct: 59  TNIDASSHAELLALRQGSTKMQNWRFPPNSTLYTTLEPC------PMCLASIQAFRIDNI 112

Query: 101 VVCVDDPDVRVSGRGLQWLSQK 122
           V   +D  +      +  +S  
Sbjct: 113 VYGANDNRLGAVNTHMDLMSVA 134


>gi|269968353|ref|ZP_06182372.1| deoxycytidylate deaminase, putative [Vibrio alginolyticus 40B]
 gi|269827039|gb|EEZ81354.1| deoxycytidylate deaminase, putative [Vibrio alginolyticus 40B]
          Length = 156

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 48/156 (30%), Gaps = 32/156 (20%)

Query: 1   MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------ 53
           M + S +  RF   A   + W       +  V  +I K   ++  G   Y          
Sbjct: 1   MTMISKWAKRFYQMAELVASWSK---DPSTQVGAVITKQNRIVSVGFNGYPHGVSDSVDT 57

Query: 54  -----------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                      HAE  A+  +  +  G   +VT  PC      P CA  II+ GI  V  
Sbjct: 58  DERELKYLKTLHAEENAILFSKRDLDGCDIWVTHFPC------PNCAAKIIQTGISHVHC 111

Query: 103 CVDDPDVRVS-----GRGLQWLSQKGIIVDRMMESE 133
                D                 Q G+ VD +   +
Sbjct: 112 PEQSEDFLSRWGDKIQVSQDMFDQAGVKVDWLPLED 147


>gi|302871258|ref|YP_003839894.1| CMP/dCMP deaminase zinc-binding [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574117|gb|ADL41908.1| CMP/dCMP deaminase zinc-binding [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 154

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 43/131 (32%), Gaps = 40/131 (30%)

Query: 31  VACLIVKDGIVIGRGV---------------------------TAYGGCPHAEVQALEEA 63
           V  LIVKD  ++  G                                   HAE  A+ +A
Sbjct: 27  VGALIVKDKRILATGYNGAPMGLPHCEEVGCVREKLNIPSGQRHELCRGLHAEQNAIIQA 86

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G    G+  Y T  PC        CA+ I+  GI++V+     PD        +   
Sbjct: 87  AKMGVVIDGSIIYTTTYPCVI------CAKMIVNAGIKKVIYKGSYPDEMSQ----KIFD 136

Query: 121 QKGIIVDRMME 131
           + GI V +  E
Sbjct: 137 EAGIEVVKFEE 147


>gi|289577394|ref|YP_003476021.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter
           italicus Ab9]
 gi|289527107|gb|ADD01459.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter
           italicus Ab9]
          Length = 147

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 38/108 (35%), Gaps = 36/108 (33%)

Query: 31  VACLIVKDGIVIGRGVTAYGG---------------------------CPHAEVQALEEA 63
           V  ++V D  +I  G                                   HAE  A+ +A
Sbjct: 27  VGAILVVDKHIISTGYNGPPTGLAHCEETGCLRDQLGIPSGERPELCRGVHAEQNAIIQA 86

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
              G   +GAT YV   PC        CA+ +I  G++R+V   + PD
Sbjct: 87  ALHGVSTKGATLYVNASPC------VMCAKMLINAGVKRIVYEEEYPD 128


>gi|198426798|ref|XP_002125101.1| PREDICTED: similar to deaminase domain containing 1 [Ciona
           intestinalis]
          Length = 178

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 32/138 (23%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA----YGGCPHAEVQALEEA 63
           ++M+ A  ++     L      V C++V K+   +  G            HAE+ A++ A
Sbjct: 8   KWMNEAFNYAEDA--LKEGEVPVGCVLVYKNKEKLSNGRNKVNETKNATRHAELVAIDNA 65

Query: 64  -------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                               +       YVT+EPC        C   +    I  VV   
Sbjct: 66  IKTVTSDSWKQSLPNDWKFTDVFEHCVMYVTVEPCIM------CCGAMRAMKIPLVVFGC 119

Query: 105 DDPDVRVSGRGLQWLSQK 122
           ++      G  L   S +
Sbjct: 120 NNERFGGCGSVLSLHSNR 137


>gi|154305221|ref|XP_001553013.1| hypothetical protein BC1G_08905 [Botryotinia fuckeliana B05.10]
 gi|150853647|gb|EDN28839.1| hypothetical protein BC1G_08905 [Botryotinia fuckeliana B05.10]
          Length = 243

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 53/164 (32%), Gaps = 59/164 (35%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTA----YGGCPHAEVQALEEA- 63
           M  AL  +   +  T+  P V C++V      V+ RG+ A    Y G  HAE  A++E  
Sbjct: 1   MREALAMANLAL-STNETP-VGCVLVDPTLKKVVARGMNATNRSYNGTRHAEFIAIDELL 58

Query: 64  --------------------------------------------GEEARGATAYVTLEPC 79
                                                        E+ R    YVT+EPC
Sbjct: 59  SSSPKVERGDVDENRSVKRKRGESEIECHDEKVDESENSKRSYGPEDMRSLDLYVTIEPC 118

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
                   CA  + + GIR+V     +     +G  L    + G
Sbjct: 119 IM------CASLLQQFGIRKVWYGAVNDKFGGNGGVLNIHVENG 156


>gi|209881015|ref|XP_002141946.1| cytidine/deoxycytidylate deaminase family protein [Cryptosporidium
           muris RN66]
 gi|209557552|gb|EEA07597.1| cytidine/deoxycytidylate deaminase family protein [Cryptosporidium
           muris RN66]
          Length = 380

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 50/157 (31%), Gaps = 38/157 (24%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           S+D  FM  A   S+    +      V  ++VK+  +I  G                   
Sbjct: 229 SWDEYFMKLAWLTSKRSNCIRRK---VGSVLVKNNRIISTGYNGTPTATTNCFEGGCIRC 285

Query: 54  -----------------HAEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                            HAE   L  AG ++   +  YVT  PC        CA+ II+C
Sbjct: 286 TNINVINGTNLEYCNCIHAESNVLFYAGKDKCEDSILYVTCLPCL------TCAKHIIQC 339

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
           GI +V+              +  L    + V +   S
Sbjct: 340 GIIKVIYSTKYLMDENRPTSIDILHNSNVEVIQFHNS 376


>gi|110004586|emb|CAK98923.1| deoxycytidylate deaminase protein [Spiroplasma citri]
          Length = 166

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 51/148 (34%), Gaps = 32/148 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVA-CLIVKDGIVIGRGV----------------- 46
           S+D  F+S A   +         +  V  C++ + G +I  G                  
Sbjct: 14  SWDDFFLSVAHVCAMRSK---DPHTQVGSCVVNQIGQIIATGYNGLPRGLNDDVFPWSRE 70

Query: 47  -----TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                T Y    HAE+ A+  A         Y TL PC+       C + II+ GI+ V+
Sbjct: 71  GKYLETKYPYVAHAELNAILSARTNLENCRIYTTLFPCAE------CTKIIIQAGIKEVI 124

Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
              D  +     +  + +  +  +  R 
Sbjct: 125 YDDDKYEGSDDNQAAKRMFDQAQVRYRC 152


>gi|320165206|gb|EFW42105.1| deoxycytidylate deaminase [Capsaspora owczarzaki ATCC 30864]
          Length = 192

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 50/147 (34%), Gaps = 35/147 (23%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP-------------- 53
            FM+ A   ++        +  V   IV ++  ++G G                      
Sbjct: 40  YFMAVAFLSAQRSK---DPSSQVGACIVNQENKIVGIGYNGMPNGCNDDLLPWARTAESP 96

Query: 54  ---------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                    HAE+ A L +   + +G T YV L PC+       CA+ II+ GI+ V+  
Sbjct: 97  LDTKYMYVCHAELNAVLNKNASDVKGCTIYVALFPCNE------CAKIIIQSGIKEVIYK 150

Query: 104 VD-DPDVRVSGRGLQWLSQKGIIVDRM 129
            D   D        +     GI   + 
Sbjct: 151 SDKYHDRPEFVVSRRLFDMAGIKYRQH 177


>gi|332702307|ref|ZP_08422395.1| bifunctional deaminase-reductase domain protein [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552456|gb|EGJ49500.1| bifunctional deaminase-reductase domain protein [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 173

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 9/121 (7%)

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
            +T +  P  +++ +           +  N+++ D  D+ ++L         ++ +EGGA
Sbjct: 61  WETPIPVPTFVLSHH-----LPERNPQRSNVVFTD-EDVSEVLKKAKQMTNKNVWIEGGA 114

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-LEYI 355
            VA  F++  L+D I+L    +++G+G       + +    F       F   +  L YI
Sbjct: 115 NVAQQFLDRELIDVIVLSIVPVILGDGIR--LFGKTHKMIEFTLREVRQFDKGLVQLTYI 172

Query: 356 G 356
            
Sbjct: 173 R 173


>gi|326801594|ref|YP_004319413.1| bifunctional deaminase-reductase domain protein [Sphingobacterium
           sp. 21]
 gi|326552358|gb|ADZ80743.1| bifunctional deaminase-reductase domain protein [Sphingobacterium
           sp. 21]
          Length = 177

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           DL +L+  L      ++  +GGA + +  +   L+D  I+    I++G+G      ++  
Sbjct: 94  DLVELVKRLKSENGKNIYCDGGAEIINELLKHDLIDEFIISVIPILLGDGTR--LFKDER 151

Query: 334 LEKNFMCVRRDYFGSDVC-LEYIGK 357
            E+    +    + + +  L Y  K
Sbjct: 152 PEQMLELLTTKPYDTGLTQLHYRRK 176


>gi|148912877|ref|YP_001293456.1| hypothetical protein ORF049 [Pseudomonas phage 73]
          Length = 155

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 56/149 (37%), Gaps = 34/149 (22%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP-------- 53
           +S +DARF+  A   + W  G       +   IV+ +  +   G                
Sbjct: 11  LSKWDARFIELAEHVAGWSKG---PRKRIGAAIVRPNRSIASLGYNGPPRGFDDAVFLNM 67

Query: 54  ----------HAEVQALEEA--GEEARGATAYVT-LEPCSHYGRSPPCAQFIIECGIRRV 100
                     HAE  A+ +A  GE+    T YV+ L PC+       CA  I+  GIRRV
Sbjct: 68  TRDEQHAVVIHAEDNAIRQAAPGEDLSACTLYVSPLFPCAI------CADRIVRAGIRRV 121

Query: 101 V--VCVDDPDVRVSGRGLQ-WLSQKGIIV 126
           V       PD R S    +   +Q G+  
Sbjct: 122 VAYCGHISPDWRASADEAERIFNQAGVEC 150


>gi|27366964|ref|NP_762491.1| Deoxycytidylate deaminase [Vibrio vulnificus CMCP6]
 gi|27358531|gb|AAO07481.1|AE016809_243 Deoxycytidylate deaminase [Vibrio vulnificus CMCP6]
          Length = 152

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 41/125 (32%), Gaps = 28/125 (22%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP-----------------HAEVQALEEAGEEARGATAY 73
           V  +I K   ++  G   Y                     HAE  A+  +  +  G   +
Sbjct: 27  VGAVITKQNRIVSVGFNGYPHGVSDSVDTDERELKYLKTLHAEENAILFSKRDLDGCEIW 86

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS-----GRGLQWLSQKGIIVDR 128
           VT  PC      P CA  II+ GI RV       D                +Q G+ V+ 
Sbjct: 87  VTHFPC------PNCAAKIIQTGISRVHCPEQSEDFLSRWGDKIAVSQDMFNQAGVEVNW 140

Query: 129 MMESE 133
           +  +E
Sbjct: 141 LPVNE 145


>gi|66824141|ref|XP_645425.1| CMP/dCMP deaminase, zinc-binding domain-containing protein
           [Dictyostelium discoideum AX4]
 gi|60473538|gb|EAL71481.1| CMP/dCMP deaminase, zinc-binding domain-containing protein
           [Dictyostelium discoideum AX4]
          Length = 224

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 20/122 (16%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP-HAEVQALEE 62
           +F  ++M  A+  +         N      IV K+G +   GV   G    H EV+A+  
Sbjct: 49  AFHEKYMKIAIDVA------VENNSKFGAAIVHKNGTLACTGVNIGGSRMYHGEVKAIMN 102

Query: 63  AGEEARGAT-----AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
              +   AT      Y T EPC      P C+  I+    ++V+      ++    R   
Sbjct: 103 CTSKYAKATWEDYYMYTTGEPC------PMCSAAIMWTKFQKVIFASYVSNMYC-ERCFN 155

Query: 118 WL 119
            L
Sbjct: 156 QL 157


>gi|307105321|gb|EFN53571.1| hypothetical protein CHLNCDRAFT_13956 [Chlorella variabilis]
          Length = 131

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 17/96 (17%)

Query: 30  SVACLIVKD--GIVIGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEP 78
               +IV    G V+G G            H E++A+ +A          G   Y + +P
Sbjct: 5   CFGAVIVDKETGEVVGEGYNKVILHNDPTWHGEMEAIRKACAKRGSPHLPGTVLYTSAQP 64

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
           C      P C+  I+   +  V       DV  +G 
Sbjct: 65  C------PMCSTAIMWARVDHVYYGATYEDVMENGN 94


>gi|307107941|gb|EFN56182.1| hypothetical protein CHLNCDRAFT_13299 [Chlorella variabilis]
          Length = 118

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 30/107 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA--------------- 48
           S+D  FM+ A   ++        N  V   IV ++ ++ G G                  
Sbjct: 9   SWDDYFMAVAFLSAQRSK---DPNKQVGACIVDRNNVICGIGYNGFPRGCPDSKLPWAKK 65

Query: 49  -YGGCP---------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGR 84
              G P         HAE+ A L + G    GA  +VT+ PC+   +
Sbjct: 66  SRRGDPLDTKYPYVCHAEMNAILNKNGASVEGAKVFVTMFPCNECAK 112


>gi|66391526|ref|YP_239051.1| Cd dCMP deaminase [Enterobacteria phage RB43]
 gi|62288614|gb|AAX78597.1| Cd dCMP deaminase [Enterobacteria phage RB43]
          Length = 174

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 52/160 (32%), Gaps = 44/160 (27%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG------------------------ 45
            M  A++ S+    +++    V  +IV +G V+ +G                        
Sbjct: 5   HMIRAIKQSQGSRCISN---RVGAVIVMNGRVVSQGTNNTVDSDCRCADHNNHMLNDEGK 61

Query: 46  ---VTAYGGCP-------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFI 92
              +              HAE++AL  A   G     A  Y T  PC +  +       I
Sbjct: 62  LKAIHRPEHSAWSNDNEIHAEMKALLSAHTNGIMLNNAELYTTASPCPNCAKHIEWYVAI 121

Query: 93  IECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
              G    V  +D  D R +   +  L + G  V+++   
Sbjct: 122 ---GAITSVYFLDKYD-RGNDEWISRLQKYGCKVEQIKRE 157


>gi|260900445|ref|ZP_05908840.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308106996|gb|EFO44536.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|328470945|gb|EGF41856.1| putative deoxycytidylate deaminase [Vibrio parahaemolyticus 10329]
          Length = 154

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 39/127 (30%), Gaps = 28/127 (22%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP-----------------HAEVQALEEAGEEARGATAY 73
           V  +I K   ++  G   Y                     HAE  A+  +  +  G   +
Sbjct: 27  VGAVITKQNRIVSVGFNGYPHGVSDSVDTDERELKYLKTLHAEENAILFSKRDLDGCDIW 86

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS-----GRGLQWLSQKGIIVDR 128
           VT  PC      P CA  II+ GI RV       D                 Q G+ VD 
Sbjct: 87  VTHFPC------PNCAAKIIQTGISRVHCPEQSEDFLSRWGDKIQVSQDMFDQAGVEVDW 140

Query: 129 MMESEGK 135
           +   +  
Sbjct: 141 LPLDDIN 147


>gi|169832085|ref|YP_001718067.1| CMP/dCMP deaminase [Candidatus Desulforudis audaxviator MP104C]
 gi|169638929|gb|ACA60435.1| CMP/dCMP deaminase, zinc-binding [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 149

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 53/151 (35%), Gaps = 44/151 (29%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-------------- 50
           ++D  FM  A   +R    L      V  ++V+D   I  G                   
Sbjct: 4   TWDEIFMEQAHLMARRSTCLRR---HVGAVLVRDNRAIASGYNGPPSGLPHCDERGGCLR 60

Query: 51  ---GCP-----------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFII 93
              G P           HAE   + +    G   R AT YVT  PC        CA+ ++
Sbjct: 61  EQLGVPSGHRQEICRALHAEQNVILQLAITGLNGRDATLYVTHFPCF------TCAKLLV 114

Query: 94  ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           + G+RR++  +  PD   +      L + GI
Sbjct: 115 QLGVRRIIYQLGYPDQFSA----DLLDEAGI 141


>gi|254510248|ref|ZP_05122315.1| cytosine deaminase [Rhodobacteraceae bacterium KLH11]
 gi|221533959|gb|EEE36947.1| cytosine deaminase [Rhodobacteraceae bacterium KLH11]
          Length = 144

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 40/121 (33%), Gaps = 18/121 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIG----RGVTAYGGCPHAEVQALEEA-- 63
           M  AL  +R           V  +IV  DG V+     R         HAE+ AL  A  
Sbjct: 1   MKLALEQARAAA--DRGEVPVGAVIVAPDGQVVAADGNRTRELNDPTAHAEILALRAACA 58

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
               E       YVTLEP         CA  +    IRRV     DP       G +  S
Sbjct: 59  QVKSERLPDHDLYVTLEP------CAMCAAALAAARIRRVYYGASDPKSGGVAHGARVFS 112

Query: 121 Q 121
            
Sbjct: 113 H 113


>gi|317509467|ref|ZP_07967084.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Segniliparus rugosus ATCC BAA-974]
 gi|316252241|gb|EFV11694.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Segniliparus rugosus ATCC BAA-974]
          Length = 167

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 17/102 (16%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQALEEA-- 63
           F+   +  +R +V         A +IV+DG ++          G P  HAE+ A+ EA  
Sbjct: 3   FIQRTVDLARQNVAEGGR--PFATVIVRDGEILAESANKVAQTGDPTAHAEILAIREACA 60

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
               E   GAT YV   PC      P C   +  C    VV 
Sbjct: 61  KLGTEHLVGATIYVLAHPC------PMCLGSLYYCSPDEVVF 96


>gi|189500555|ref|YP_001960025.1| CMP/dCMP deaminase zinc-binding [Chlorobium phaeobacteroides BS1]
 gi|189495996|gb|ACE04544.1| CMP/dCMP deaminase zinc-binding [Chlorobium phaeobacteroides BS1]
          Length = 174

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 50/156 (32%), Gaps = 44/156 (28%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP------------- 53
             FMS A   SR     T  +  +  ++V+D  ++  G      G P             
Sbjct: 30  EYFMSVAHLISRRA-TCTRGH--IGAVLVRDNNILSTGYNGAPSGLPHCNETTCRIYSSK 86

Query: 54  --------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                         HAE+ A+ +A   G   + A  Y+T  PC H      C + +I  G
Sbjct: 87  HPDGTVEENCVNTIHAEINAIAQAAKHGVSIKDADIYITASPCIH------CLKVLINVG 140

Query: 97  IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
           I+ +                  +   G+ + ++   
Sbjct: 141 IKTIYY----DKPYKIDHIADLIRLSGVKLVQIHPE 172


>gi|87311104|ref|ZP_01093228.1| putative nucleotide deaminase [Blastopirellula marina DSM 3645]
 gi|87286195|gb|EAQ78105.1| putative nucleotide deaminase [Blastopirellula marina DSM 3645]
          Length = 162

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 36/112 (32%), Gaps = 17/112 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEE 66
           M  A+  ++  +    +     C I  DG V+               HAEV AL  A ++
Sbjct: 13  MQLAIEKAKQGIAARQS--PFGCAIAVDGEVVAVSHNLVLQTVDATAHAEVTALRVACQK 70

Query: 67  -----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                   A    T EPC      P CA  +    +  +       D   +G
Sbjct: 71  VGEILLPRAQVATTCEPC------PMCAAALHWARVAEIYYGATIDDAAAAG 116


>gi|300867695|ref|ZP_07112340.1| CMP/dCMP deaminase, zinc-binding [Oscillatoria sp. PCC 6506]
 gi|300334278|emb|CBN57512.1| CMP/dCMP deaminase, zinc-binding [Oscillatoria sp. PCC 6506]
          Length = 197

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 48/152 (31%), Gaps = 40/152 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCPHAEVQ----- 58
           ++D  F+  A + +      T     V  +IVKD  V+  G      G  H   Q     
Sbjct: 15  TWDEYFLMLA-KLA--ATRSTCLAFPVGAVIVKDRQVVATGYNGSPSGSVHCTAQGFCYP 71

Query: 59  --------------ALE----------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                         A+             G    G + YVTLEPC +      C + II 
Sbjct: 72  GLSSCDASQALPSRAIHAEANAIAQAARHGISTAGGSIYVTLEPCIY------CLKLIIS 125

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            GIR V       +     +       +GI+ 
Sbjct: 126 AGIREVFYEAV-FNTGDKAKVRDSFVSEGIVT 156


>gi|17557019|ref|NP_498980.1| hypothetical protein ZK643.2 [Caenorhabditis elegans]
 gi|267457|sp|P30648|DCTD_CAEEL RecName: Full=Probable deoxycytidylate deaminase; AltName:
           Full=dCMP deaminase
 gi|3881681|emb|CAA77473.1| C. elegans protein ZK643.2, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 197

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 30/130 (23%)

Query: 27  TNPSVACLIV-KDGIVIGRGVTAYG---------------------GCPHAEVQA-LEEA 63
            N  V C+IV KD  ++  G   +                         HAE+ A + + 
Sbjct: 68  PNTQVGCVIVDKDNCIVSVGYNGFPIGVDDDVFRWDKEDPEDNKHLYVVHAEMNAIINKR 127

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
                  T YVTL PC+       CAQ +I+  +++V   +++ D        + L    
Sbjct: 128 CTTLHDCTVYVTLFPCNK------CAQMLIQSRVKKVYF-LENRDELAFRASKKMLDHAR 180

Query: 124 IIVDRMMESE 133
           +  ++++  +
Sbjct: 181 LPYEQIVMPQ 190


>gi|298293742|ref|YP_003695681.1| CMP/dCMP deaminase zinc-binding protein [Starkeya novella DSM 506]
 gi|296930253|gb|ADH91062.1| CMP/dCMP deaminase zinc-binding protein [Starkeya novella DSM 506]
          Length = 240

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 41/146 (28%), Gaps = 55/146 (37%)

Query: 8   ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQA 59
           A+FM  A R +        G          +IVKDG +IGRG       G P  HAE+ A
Sbjct: 56  AKFMEEATRLAIESVEKGWGG-----PFGAVIVKDGEIIGRGQNRVLLTGIPVFHAEITA 110

Query: 60  LEEAGEE------------------------------------ARGATAYVTLEPCSHYG 83
           + +A                                        +G   Y+   PC    
Sbjct: 111 IMDASARLNPKALLGSDYGAGTILEMIPREPGSPDPVPERARMLKGCEIYINGAPC---- 166

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDV 109
             P C   I    I  V       D 
Sbjct: 167 --PMCMSAIYWSRIDHVYFAASLKDT 190


>gi|116074668|ref|ZP_01471929.1| cytidine/deoxycytidylate deaminase family protein [Synechococcus
           sp. RS9916]
 gi|116067890|gb|EAU73643.1| cytidine/deoxycytidylate deaminase family protein [Synechococcus
           sp. RS9916]
          Length = 167

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 53/156 (33%), Gaps = 21/156 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           M        +M   L+ +   +G     P  A ++   G  IG G            HAE
Sbjct: 1   MLSEDQQRFWMGLLLQRAE-AIGRQGEVPVSALVLDGKGRCIGFGGNTRERDQDPLGHAE 59

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           + A+ +A            T  VTLEPC      P CA  +++  + +V+    DP    
Sbjct: 60  LVAIRQATVLRGDWRLNDCTLLVTLEPC------PMCAGALVQARMGQVIYGARDPKRGA 113

Query: 112 SGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
            G  +             ++  ++E E    L  + 
Sbjct: 114 MGGTIDLSQHPSAHHHMKVIGGVLEEEASTMLAQWF 149


>gi|261367306|ref|ZP_05980189.1| putative deoxycytidylate deaminase [Subdoligranulum variabile DSM
           15176]
 gi|282570909|gb|EFB76444.1| putative deoxycytidylate deaminase [Subdoligranulum variabile DSM
           15176]
          Length = 159

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 51/147 (34%), Gaps = 34/147 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-------------TAYG 50
           S+D  FM  AL  +         N  V   IV  +  ++  G                  
Sbjct: 8   SWDEYFMGIALLSAMRSKDN---NSQVGACIVSPENKILSLGYNGMPIGCNDDDMPWERE 64

Query: 51  GCP---------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           G           H+E+ A L     +  GA  YVTL PC+       CA+ II+ GI+ +
Sbjct: 65  GDDLNTKYMYVCHSELNAILNSPHNDLTGARMYVTLFPCNE------CAKAIIQSGIKEL 118

Query: 101 VVCVD-DPDVRVSGRGLQWLSQKGIIV 126
           +   D   D   S    +  +  G+  
Sbjct: 119 IYLSDKYHDTHASIASRRMFNMTGVKY 145


>gi|325104193|ref|YP_004273847.1| bifunctional deaminase-reductase domain protein [Pedobacter saltans
           DSM 12145]
 gi|324973041|gb|ADY52025.1| bifunctional deaminase-reductase domain protein [Pedobacter saltans
           DSM 12145]
          Length = 177

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           +LK L+  L      ++  +GGA V +  +   L+D  I+    +++G G       +G 
Sbjct: 94  NLKDLIDRLRSENGKNIYCDGGAEVINELLKYDLIDEFIISIVPVLLGNGIR--LFNDGR 151

Query: 334 LEKNFMCVRRDYF 346
            E+    V+   F
Sbjct: 152 PEQMLEFVKAKTF 164


>gi|221106915|ref|XP_002154094.1| PREDICTED: similar to dCMP deaminase [Hydra magnipapillata]
          Length = 203

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 57/172 (33%), Gaps = 35/172 (20%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV----------------- 46
           S++  FM+ A   ++           V   IV +   ++G G                  
Sbjct: 24  SWEDYFMAIAFLSAQRSK---DPVTQVGACIVNNENKIVGIGYNGMPIGCSDEVLPWSRI 80

Query: 47  ------TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A L +   + +    Y TL PC+       CA+ I++  I+ 
Sbjct: 81  GESFMETKYAYVCHAELNAVLNKNSADVQDCIIYTTLFPCNE------CAKIILQSRIKE 134

Query: 100 VVVCVDDPDVRVSGRGLQWLSQ-KGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
           +V   +    R   +  + +    GI   +    + +I +        +   
Sbjct: 135 IVYYSNKYKDRPETQAAEKMFDLAGIKHRQHQPKQKQIVIDFDRINTFKPTP 186


>gi|315504158|ref|YP_004083045.1| cmp/dcmp deaminase zinc-binding protein [Micromonospora sp. L5]
 gi|315410777|gb|ADU08894.1| CMP/dCMP deaminase zinc-binding protein [Micromonospora sp. L5]
          Length = 141

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 37/114 (32%), Gaps = 24/114 (21%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNP----SVAC----LIVKDGIVIGRGVTAYGGCPH 54
           ++  D  F+  A+  +    G +   P     V      LI     V+           H
Sbjct: 1   MTPDDEAFLRRAVELADRA-GASGERPFASLLVGADGTVLIEDHNTVVS----DKDVTAH 55

Query: 55  AE----VQALEE-AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
            E      A  + A E A   T Y + +PC      P C   I   G+ RVV  
Sbjct: 56  PELKLARWAARQLAPEAAVATTMYTSCQPC------PMCTVAINASGLGRVVYA 103


>gi|38505611|ref|NP_942232.1| hypothetical protein sll5076 [Synechocystis sp. PCC 6803]
 gi|38423635|dbj|BAD01846.1| sll5076 [Synechocystis sp. PCC 6803]
          Length = 181

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 59/204 (28%), Gaps = 46/204 (22%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGF---ISKNQV--HLLRAQSDAILVGIGTVLADD 204
              T+ IA S D  I     G   +       S             DA+++G  T     
Sbjct: 1   MKATVYIATSVDGFIARNNGGIDWLPSAGDTDSSEDYGYQEFIDSVDALVMGRNTYE--- 57

Query: 205 PELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
             L    +       P+ ++      +  D                              
Sbjct: 58  --LALSFDSWPYGEKPVFVLSSRKVDIPEDI----------------------------- 86

Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
              I+       ++++  L  RG   L ++GG      F++  L+  +I+ +  I+IGEG
Sbjct: 87  -TKIVESMSVPPREVVCRLSKRGFQHLYIDGG-KTIQGFLSEGLIQQLIITKVPILIGEG 144

Query: 324 GIPSPLEEGYL-EKNFMCVRRDYF 346
               PL      +     +    F
Sbjct: 145 ---IPLFSALPHDVRLHHLETRQF 165


>gi|319948568|ref|ZP_08022697.1| cytidine and deoxycytidylate deaminase family protein [Dietzia
           cinnamea P4]
 gi|319437767|gb|EFV92758.1| cytidine and deoxycytidylate deaminase family protein [Dietzia
           cinnamea P4]
          Length = 143

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 50/148 (33%), Gaps = 25/148 (16%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY--GGCP--HAEVQALEEA-- 63
           M  AL  +    G    +  V  +++  DG  +          G P  HAEV AL EA  
Sbjct: 1   MRRALAVA---AGTPPEDVPVGAVVIGPDGTELAAATNRRETDGDPFAHAEVLALREAAR 57

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-- 117
               G      T  VTLEPC        CA   +   + R+V    +P     G      
Sbjct: 58  VLGDGWRLEDCTLVVTLEPC------TMCAGAAVAARVGRIVFGAWEPRTGACGSLWDVV 111

Query: 118 ---WLSQKGIIVDRMMESEGKIFLHAYL 142
               L  +  +   ++E E    L  + 
Sbjct: 112 RDRRLVHRPEVHGGVLEDECAAVLEDFF 139


>gi|316971942|gb|EFV55655.1| guanine deaminase [Trichinella spiralis]
          Length = 161

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 16/115 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
              +  A + +   V      P    L+VK+G V+  G            HAEV  +  A
Sbjct: 10  EALLKMACQEAERGVESDDGGP-FGALVVKNGRVLAIGHNEVLLTNDPTAHAEVTVIRRA 68

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                     G   Y + +PC      P C    +  GI ++   + + D   +G
Sbjct: 69  AAALGHWNLAGCELYTSCKPC------PMCLGAALWSGIEKIYYSLSEEDAAAAG 117


>gi|311070241|ref|YP_003975164.1| putative oxidoreductase [Bacillus atrophaeus 1942]
 gi|310870758|gb|ADP34233.1| putative oxidoreductase [Bacillus atrophaeus 1942]
          Length = 174

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 15/136 (11%)

Query: 222 IILDPHFKLSLDSKIIKTA---LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
           +IL          K++            ++T+  D      F  +++  I+ D +D  + 
Sbjct: 48  VILGRS--TYEHIKVLTADFPYKDKTCYVLTKTPDR-----FSDEHVIFIHEDMKDFIQR 100

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
           L     RG   + + GGA +AH+ I    +D  I+    +++G  GIP    E   E   
Sbjct: 101 LKK--QRGSN-IWIAGGAELAHTLIKEGAIDEFIMTMIPVMLGS-GIP-LFHEHQTETKL 155

Query: 339 MCVRRDYFGSDVCLEY 354
                  FG    L Y
Sbjct: 156 RLTDMRRFGQAAQLHY 171


>gi|254502430|ref|ZP_05114581.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Labrenzia alexandrii DFL-11]
 gi|222438501|gb|EEE45180.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Labrenzia alexandrii DFL-11]
          Length = 155

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 15/88 (17%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEARG-----ATAYVTLEPCS 80
            V  ++V++G ++ R             HAEV  +  A    +         YVTLEPC+
Sbjct: 31  PVGAVLVRNGEIVARDGNRTLELNDPTAHAEVLVIRAACAALQSQRLPKCDLYVTLEPCA 90

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                  CA  I    IRR+     D  
Sbjct: 91  M------CAGAISFARIRRLYYGAGDEK 112


>gi|149917706|ref|ZP_01906202.1| Deoxycytidylate deaminase [Plesiocystis pacifica SIR-1]
 gi|149821488|gb|EDM80888.1| Deoxycytidylate deaminase [Plesiocystis pacifica SIR-1]
          Length = 154

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 47/148 (31%), Gaps = 33/148 (22%)

Query: 9   RFMSAALRFSRWHVGLTS-TNPSVACLIV-KDGIVIGRGVTAYGGC-------------- 52
           ++    L  +R   G +   +  V C++V  D  +   G                     
Sbjct: 4   KWDRRFLELARHISGWSKDPSTQVGCVVVGPDREIRSAGFNGLPRGIEDSAKRLQDRALK 63

Query: 53  ----PHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE  A+  A   G   +G TAYVT  PC        CA+ +I+ G+  VV    
Sbjct: 64  YPLICHAEENAIMHAARIGVALKGCTAYVTWPPC------TRCARSLIQAGVDEVVFPGP 117

Query: 106 DPDVRVSGRGLQ----WLSQKGIIVDRM 129
                              + G+ +  +
Sbjct: 118 IEIPDRWREDFDMSRGMFEEAGVDIREV 145


>gi|254577709|ref|XP_002494841.1| ZYRO0A10890p [Zygosaccharomyces rouxii]
 gi|238937730|emb|CAR25908.1| ZYRO0A10890p [Zygosaccharomyces rouxii]
          Length = 248

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 64/187 (34%), Gaps = 33/187 (17%)

Query: 1   MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVK--DGIVIGRGVTAYG----GC 52
           M +++   R M  ALR  R+ +  G T     VAC+ V      ++  G+        G 
Sbjct: 1   MALANVHLRHMETALRLGRYALDHGET----PVACIFVHIPTDQIVAFGMNDTNRSLTGV 56

Query: 53  PHAEVQALEEAGEEAR---------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
            HAE   +E+  E                YVT+EPC        CA  + + GI +V+  
Sbjct: 57  AHAEFMGIEQIREFVSPDELVPFFGDIALYVTVEPCIM------CASALKQLGIGKVIFG 110

Query: 104 VDDPDVRVSGRGLQWLSQKGII------VDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
             +     +G  L        +      +  ++  E  + L  +  R  EK      K  
Sbjct: 111 AGNDRFGGNGTVLSINQDSCTLGGKHESIPGVLRREAIMLLRYFYVRSNEKAPKPRTKGE 170

Query: 158 VSQDNMI 164
              D   
Sbjct: 171 RLLDKEN 177


>gi|319403672|emb|CBI77257.1| Cytosine/adenosine deaminase [Bartonella rochalimae ATCC BAA-1498]
          Length = 150

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 47/152 (30%), Gaps = 22/152 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG--VTAYGGCP--HAEVQALEEA--- 63
           M  AL  ++           V  +I     +I R          P  HAE++ +  A   
Sbjct: 6   MEIALLEAQSAKKQDE--IPVGAVITHGQTIIARAGNYIKNPHDPTGHAEMRVIRIACQI 63

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW--- 118
              E       YVTLEPC+       CA  I    IR +     D        G ++   
Sbjct: 64  FKSERIPECDIYVTLEPCAM------CAAAISFARIRNLYYATSDSKGGAIEHGPRFYQQ 117

Query: 119 --LSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
                +  +     E E    L  +  ++  +
Sbjct: 118 PTCHHRPNVYSGFKEKEASQLLKDFFIQKRHQ 149


>gi|229820162|ref|YP_002881688.1| CMP/dCMP deaminase zinc-binding [Beutenbergia cavernae DSM 12333]
 gi|229566075|gb|ACQ79926.1| CMP/dCMP deaminase zinc-binding [Beutenbergia cavernae DSM 12333]
          Length = 163

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 16/93 (17%)

Query: 1  MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-----DGIVIGRGVTA----YGG 51
          MP SS D+ F++ A+  +  +V           LIV+        V+  G       +  
Sbjct: 1  MPESSRDSAFLALAVDLATANVADGGG--PFGALIVRSDAQPGDHVVATGTNRVTRDHDA 58

Query: 52 CPHAEVQALEEAG-----EEARGATAYVTLEPC 79
            HAEV+A+  AG         G T Y + EPC
Sbjct: 59 TAHAEVEAIRAAGRAVGSHALTGMTLYASCEPC 91


>gi|145294893|ref|YP_001137714.1| hypothetical protein cgR_0840 [Corynebacterium glutamicum R]
 gi|140844813|dbj|BAF53812.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 186

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 11/107 (10%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV--TSLLVEGGAAVAHS 301
           P  + +  D          K + ++    RD+ K+L  ++      T + + GG  +A  
Sbjct: 80  PTWVFSSRD----LEIPEGKPVKVM---NRDVAKVLPAILEENPENTDIWIVGGGDLAGQ 132

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
           F ++  +D IIL  + + + + G P+ +           V     G 
Sbjct: 133 FFDAGALDRIILTMAPVFL-DEGQPA-MPCRIESDRLRTVNVREVGQ 177


>gi|288958823|ref|YP_003449164.1| CMP/dCMP deaminase [Azospirillum sp. B510]
 gi|288911131|dbj|BAI72620.1| CMP/dCMP deaminase [Azospirillum sp. B510]
          Length = 150

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 39/104 (37%), Gaps = 17/104 (16%)

Query: 30  SVACLIVKD--GIVIGRGVTAY----GGCPHAEVQALEEAGEEAR-----GATAYVTLEP 78
            V  +IV    G V+               HAE+ A+  A  E R     G   YVTLEP
Sbjct: 24  PVGAVIVDAATGTVLASAGNRTEELCDPSAHAELLAIRAACAERRQPRLPGCDLYVTLEP 83

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           C+       CA  I    IRRV     DP       G ++ +Q 
Sbjct: 84  CA------LCAAAISFARIRRVYYGAYDPKGGAVDHGPRFFTQA 121


>gi|284167540|ref|YP_003405818.1| CMP/dCMP deaminase zinc-binding protein [Haloterrigena turkmenica
           DSM 5511]
 gi|284017195|gb|ADB63145.1| CMP/dCMP deaminase zinc-binding protein [Haloterrigena turkmenica
           DSM 5511]
          Length = 163

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 54/162 (33%), Gaps = 27/162 (16%)

Query: 1   MPVSSFDAR----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI----GRGVTAYGGC 52
           MP  +FD       M  A   +R  +           ++V+D  VI     R VT     
Sbjct: 10  MPEPTFDEFDHEAHMRRAFELAREAIDRGDR--PFGTVLVRDDTVIMADSNRVVTEDDIR 67

Query: 53  PHAEVQ----ALEEAGEEARGATA-YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
            H E+     A  E   + R  T  Y + EPC      P CA  +I  G  RVV  V   
Sbjct: 68  RHPELHLAYRACRELDPDERAETVMYTSTEPC------PMCAGGMISAGFGRVVYSVGSD 121

Query: 108 DVRVSGRGLQWLSQKGI------IVDRMMESEGKIFLHAYLT 143
           ++         +    I      +   ++  EG+     +  
Sbjct: 122 ELPAFTDSEPAVRSAEILDGVSDVTGPVLNEEGRQLHRDFDW 163


>gi|328545044|ref|YP_004305153.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [polymorphum gilvum SL003B-26A1]
 gi|326414788|gb|ADZ71851.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Polymorphum gilvum SL003B-26A1]
          Length = 176

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 15/101 (14%)

Query: 30  SVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            V  ++V DG V+     R +       HAE+  +  A      +   G   YVTLEPC 
Sbjct: 52  PVGAVLVCDGRVVAADGNRTLELNDPTAHAEMLVIRAACAALGSQRLSGCDLYVTLEPC- 110

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                P CA  I    IRR+     D        G+++ + 
Sbjct: 111 -----PMCAGAISFARIRRLYYGAGDEKGGAVDHGVRFFAS 146


>gi|310824651|ref|YP_003957009.1| Riboflavin biosynthesis protein RibD [Stigmatella aurantiaca
           DW4/3-1]
 gi|309397723|gb|ADO75182.1| Riboflavin biosynthesis protein RibD [Stigmatella aurantiaca
           DW4/3-1]
          Length = 189

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 62/216 (28%), Gaps = 48/216 (22%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVP-ITGFISKNQVHLLRAQSDAILVGIGTV------- 200
              +T  +  S D  I  A                    +A +   + G           
Sbjct: 1   MGKLTFGMMTSLDGYINDADGKFDWGQISEEVHRFAEKEQANAGTTIYGRRMFETMAVWD 60

Query: 201 -LADDPELTC--RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
            LA+DP +    R   +   +  +I++                      + T     V A
Sbjct: 61  TLAEDPSVHPFERDFSVIWRNTDKIVVSRSLSE----------------VTTTRTRLVRA 104

Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
           L+                      L       L+V  G  +A S++   L+D + +Y   
Sbjct: 105 LSADDIG----------------KLKAESAKDLIV-AGPTLAASYLKQGLIDEVSIYYIP 147

Query: 318 IVIGEGGIPSPLEEGYLEK-NFMCVRRDYFGSDVCL 352
           +V+G G   +P+ +G         +    FG+ V  
Sbjct: 148 VVVGGG---TPMFQGIDATVRLERLDARAFGNGVTF 180


>gi|260463254|ref|ZP_05811455.1| CMP/dCMP deaminase zinc-binding [Mesorhizobium opportunistum
           WSM2075]
 gi|259030844|gb|EEW32119.1| CMP/dCMP deaminase zinc-binding [Mesorhizobium opportunistum
           WSM2075]
          Length = 149

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 32/88 (36%), Gaps = 15/88 (17%)

Query: 30  SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            V  +I   G V+               HAE+ A+ EA      E   G   YVTLEPC+
Sbjct: 24  PVGAVIASGGTVVASAGNRTRELADPTAHAEMLAIREACGKLATERLTGHDLYVTLEPCA 83

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                  CA  I    +RR+     D  
Sbjct: 84  M------CAGAISFARLRRLYFGAADEK 105


>gi|116492911|ref|YP_804646.1| deoxycytidylate deaminase [Pediococcus pentosaceus ATCC 25745]
 gi|116103061|gb|ABJ68204.1| Deoxycytidylate deaminase [Pediococcus pentosaceus ATCC 25745]
          Length = 160

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 34/97 (35%), Gaps = 25/97 (25%)

Query: 5  SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           +D  FM+ A   S      T T  SV  +IV+D  VI  G                   
Sbjct: 6  DWDQYFMTQATLLSLRS---TCTRLSVGAVIVRDRRVIAGGYNGSVSGDVHCIDEGCYLV 62

Query: 54 --------HAEVQALEEA---GEEARGATAYVTLEPC 79
                  HAE+ A+ +    G    GA  YVT  PC
Sbjct: 63 EGHCVRTIHAEMNAVLQCAKFGVATDGAEVYVTDFPC 99


>gi|148973883|ref|ZP_01811416.1| putative deoxycytidylate deaminase [Vibrionales bacterium SWAT-3]
 gi|145965580|gb|EDK30828.1| putative deoxycytidylate deaminase [Vibrionales bacterium SWAT-3]
          Length = 147

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 38/125 (30%), Gaps = 28/125 (22%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP-----------------HAEVQALEEAGEEARGATAY 73
           V  +I K   ++  G   Y                     HAE  A+  A  +      +
Sbjct: 27  VGAVITKHNRIVSVGFNGYPHGVSDSADTDDREMKYLKTLHAEENAILFAKRDLDSCEIW 86

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS-----GRGLQWLSQKGIIVDR 128
           VT  PC      P CA  II+ GI  V       D                 Q G+ VD 
Sbjct: 87  VTHFPC------PNCAAKIIQTGISAVHCPEQSEDFLSRWGDKIKVSQDMFEQAGVQVDW 140

Query: 129 MMESE 133
           +  ++
Sbjct: 141 LPLAD 145


>gi|83859467|ref|ZP_00952988.1| cytidine and deoxycytidylate deaminase family protein [Oceanicaulis
           alexandrii HTCC2633]
 gi|83852914|gb|EAP90767.1| cytidine and deoxycytidylate deaminase family protein [Oceanicaulis
           alexandrii HTCC2633]
          Length = 164

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 49/133 (36%), Gaps = 21/133 (15%)

Query: 2   PVSSFDAR--FMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAY----GGCP 53
           P    D    FM  AL  ++       T   V  +IV      +I     A         
Sbjct: 6   PTPEQDRETGFMRRALGLAQAAAAAGET--PVGAVIVDPQTDNIIAEAGNAPISDCDPTG 63

Query: 54  HAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE++AL  A ++       G   YVTLEPC+       CA  I    I +V+    DP 
Sbjct: 64  HAEIRALRLAAQKLGNYRLTGLELYVTLEPCAM------CAGAISHARIGKVIYGASDPK 117

Query: 109 VRVSGRGLQWLSQ 121
                 G Q+ +Q
Sbjct: 118 GGAVDHGPQFFAQ 130


>gi|325978066|ref|YP_004287782.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325177994|emb|CBZ48038.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 226

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 57/148 (38%), Gaps = 17/148 (11%)

Query: 222 IILDPHFKLSLDSKIIKTAL---LAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLK 276
           II+D    L     + +         +II +E            K+I+ I C  +  +L 
Sbjct: 85  IIVDTKGTL-----LWRDDSSYEKPHLIITSEAVSTDYLDYLDSKHISWIACGKEKINLA 139

Query: 277 KLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
           + + IL     V+ L V GG  +   F+ + L+D I L     + G  G+ S  +   +E
Sbjct: 140 RAMEILAEEFAVSRLAVVGGGHINAGFLQAGLLDEISLLIGLGIDGREGMASVFDGFSME 199

Query: 336 KN-----FMCVRRDYFGSDVCLEYIGKN 358
                     V+    G+ V L Y  +N
Sbjct: 200 TEPTAVTLKEVKTYPDGA-VWLRYTSEN 226


>gi|212528776|ref|XP_002144545.1| deoxycytidylate deaminase, putative [Penicillium marneffei ATCC
           18224]
 gi|210073943|gb|EEA28030.1| deoxycytidylate deaminase, putative [Penicillium marneffei ATCC
           18224]
          Length = 291

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 33/99 (33%), Gaps = 32/99 (32%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-- 53
           ++D  FM  A   +            V C+IV+D  VI  G             GGCP  
Sbjct: 191 TWDQYFMQLA-SLAAQRSNCMKR--RVGCVIVRDRRVISTGYNGTPRNITNCNEGGCPRC 247

Query: 54  ----------------HAEVQALEEAGEE--ARGATAYV 74
                           HAE  AL EAG E    GA  Y 
Sbjct: 248 NRGEGGGAGLSTCLCIHAEENALLEAGRERIREGAILYC 286


>gi|148284933|ref|YP_001249023.1| cytosine deaminase [Orientia tsutsugamushi str. Boryong]
 gi|146740372|emb|CAM80811.1| cytosine deaminase [Orientia tsutsugamushi str. Boryong]
          Length = 155

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 41/123 (33%), Gaps = 19/123 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGV----TAYGGCPHAEVQALEEA 63
           FM  A+  +     L      V  +IV      V+ R      T      HAE+ A+ +A
Sbjct: 2   FMLQAIEQASQAFNL--GEVPVGVVIVNRATKTVLTRAYNKVETTLNPTFHAEIIAINKA 59

Query: 64  GEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                     G   YV+LEPC+       CA  +    I R+     D        G++ 
Sbjct: 60  CSLLSCKYLHGYDIYVSLEPCAM------CAAALSHVRIDRIFFGAYDEKFGAIENGVRL 113

Query: 119 LSQ 121
              
Sbjct: 114 FYN 116


>gi|117620375|ref|YP_856166.1| cytidine/deoxycytidylate deaminase, zinc-binding region [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117561782|gb|ABK38730.1| cytidine/deoxycytidylate deaminase, zinc-binding region [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 167

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 20/118 (16%)

Query: 1   MPVSSFDARFMSAALRFS---RWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP-- 53
           +  +     ++  AL+ +   R   G        A L+V+D  ++   V A    G P  
Sbjct: 17  LTANPSHQEWLEQALQLALHNRRQGGR-----PFAALLVRDNQLVTSAVNAMHQDGDPTR 71

Query: 54  HAEVQALEEAGE--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           HAE++AL +A +     GA  Y +  PC      P C   ++  GI  V    D+ D 
Sbjct: 72  HAELEALRQASQVGPLAGAIVYASGHPC------PMCLSALVMNGIAAVYYAFDNEDA 123


>gi|91223974|ref|ZP_01259237.1| putative deoxycytidylate deaminase [Vibrio alginolyticus 12G01]
 gi|254227760|ref|ZP_04921191.1| Deoxycytidylate deaminase [Vibrio sp. Ex25]
 gi|262395803|ref|YP_003287656.1| deoxycytidylate deaminase [Vibrio sp. Ex25]
 gi|91190885|gb|EAS77151.1| putative deoxycytidylate deaminase [Vibrio alginolyticus 12G01]
 gi|151939802|gb|EDN58629.1| Deoxycytidylate deaminase [Vibrio sp. Ex25]
 gi|262339397|gb|ACY53191.1| deoxycytidylate deaminase [Vibrio sp. Ex25]
          Length = 154

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 38/125 (30%), Gaps = 28/125 (22%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP-----------------HAEVQALEEAGEEARGATAY 73
           V  +I K   ++  G   Y                     HAE  A+  +  +  G   +
Sbjct: 27  VGAVITKQNRIVSVGFNGYPHGVSDSVDTDERELKYLKTLHAEENAILFSKRDLDGCDIW 86

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS-----GRGLQWLSQKGIIVDR 128
           VT  PC      P CA  II+ GI  V       D                 Q G+ VD 
Sbjct: 87  VTHFPC------PNCAAKIIQTGISHVHCPEQSEDFLSRWGDKIQVSQDMFDQAGVKVDW 140

Query: 129 MMESE 133
           +   +
Sbjct: 141 LPLED 145


>gi|320353575|ref|YP_004194914.1| dCMP deaminase [Desulfobulbus propionicus DSM 2032]
 gi|320122077|gb|ADW17623.1| dCMP deaminase [Desulfobulbus propionicus DSM 2032]
          Length = 164

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 42/128 (32%), Gaps = 33/128 (25%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV----------------- 46
           S+D  FM+ A+            N  V   +      ++G G                  
Sbjct: 10  SWDEYFMAVAILSGHRSK---DPNTQVGACVANSQNKIVGVGYNGFPWGCSDDELPWSRE 66

Query: 47  -----TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                T Y    HAE+ A L     + R    YV L PC+       C + II+ GIR +
Sbjct: 67  GSYLDTKYPYVCHAELNAVLNSITYDLRDCRLYVALFPCNE------CTKVIIQAGIREI 120

Query: 101 VVCVDDPD 108
           +   D   
Sbjct: 121 IYLSDKYK 128


>gi|229492959|ref|ZP_04386754.1| tRNA-specific adenosine deaminase [Rhodococcus erythropolis SK121]
 gi|229319989|gb|EEN85815.1| tRNA-specific adenosine deaminase [Rhodococcus erythropolis SK121]
          Length = 166

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 20/123 (16%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
           M  S  DA  ++ AL  +R  + L      +  ++  D  V+GR  T          HA+
Sbjct: 1   MMFSPQDA--LAVALDVAREGMELGEM--PIGAVVFDDDRVLGRAYTQERALGRRVVHAD 56

Query: 57  VQALEEAGE-----EARG-ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           +QAL +A E      A G  T  V LEPC        C    I  G+ RV   ++ P+  
Sbjct: 57  LQALLQADEALGFTRASGELTLAVNLEPCLM------CMGAAITLGVTRVWFALESPNDG 110

Query: 111 VSG 113
            + 
Sbjct: 111 AAE 113


>gi|229915811|ref|YP_002884457.1| CMP/dCMP deaminase zinc-binding [Exiguobacterium sp. AT1b]
 gi|229467240|gb|ACQ69012.1| CMP/dCMP deaminase zinc-binding [Exiguobacterium sp. AT1b]
          Length = 191

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 13/95 (13%)

Query: 46  VTAYGGCPHAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
             +     HAE+ A   L      A GATAYVT  PC        C+  +I   + RVV 
Sbjct: 105 HWSKQHEIHAEINAIGKLAADSTNAFGATAYVTHSPCH------ACSLALIAARVARVVY 158

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
            V        G GL+ + + GI V  M   +    
Sbjct: 159 AVGY----EHGDGLELMRESGIEVLHMPLEKMYKN 189


>gi|55379804|ref|YP_137654.1| cytosine deaminase [Haloarcula marismortui ATCC 43049]
 gi|55232529|gb|AAV47948.1| cytosine deaminase [Haloarcula marismortui ATCC 43049]
          Length = 154

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 56/162 (34%), Gaps = 27/162 (16%)

Query: 1   MPVSSFDAR----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGC 52
           MP+S FD       +  A   +R  V           ++V+D  V+        T     
Sbjct: 1   MPMSEFDEFDHETHIQRAFELARTAVDRGDR--PFGSVLVRDNEVVMEASNRVLTESDVR 58

Query: 53  PHAEVQ----ALEEAGEEARGATA-YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
            H E+Q    A++E   + R  T  Y + EPC      P CA  +   G+ RVV  V   
Sbjct: 59  RHPELQLAHRAMQEFDPDERAETVMYTSTEPC------PMCAGGLRYAGLGRVVYSVGSD 112

Query: 108 DVRVSGRGLQWLSQ----KGI--IVDRMMESEGKIFLHAYLT 143
           ++       + +       GI  +   +   EG      +  
Sbjct: 113 EMGEFSGHEESVRSGEILAGITDVAGPICHEEGLAIHEDFDW 154


>gi|54295924|ref|YP_122236.1| hypothetical protein plpp0081 [Legionella pneumophila str. Paris]
 gi|53755756|emb|CAH17258.1| hypothetical protein plpp0081 [Legionella pneumophila str. Paris]
          Length = 390

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 39/104 (37%), Gaps = 9/104 (8%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           PVI+++     +        ++  +        +L+  L   G   L ++GG  V  +FI
Sbjct: 76  PVIVMSSKPIEI------PTHLKYVSASSEAPIELVKRLTDEGFKHLYIDGGITV-QNFI 128

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
            + L+  + +  + +++G G   S       +     +     G
Sbjct: 129 AANLIHELTITIAPVLLGSGR--SLFGHLTQDIELEHLETKCIG 170


>gi|302525979|ref|ZP_07278321.1| cytidine/deoxycytidine deaminase [Streptomyces sp. AA4]
 gi|302434874|gb|EFL06690.1| cytidine/deoxycytidine deaminase [Streptomyces sp. AA4]
          Length = 147

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 53/142 (37%), Gaps = 17/142 (11%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAGEEA-- 67
           A   +          P  A L  +DG ++GRG       G P  HAE  A   AG     
Sbjct: 9   AREEAEAGKAEGGV-PIGAALFDRDGKLLGRGHNRRVQDGDPSLHAETAAFRAAGRRPHY 67

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           R      TL PC +      C+  + + GI  VV+     + R    G  WL+  G+ +D
Sbjct: 68  RDTIMVTTLSPCWY------CSGLVRQFGIPHVVIG----ESRTFTGGHGWLADHGVRID 117

Query: 128 RMMESEGKIFLHAYLTRQVEKR 149
            + +      +  ++ R+    
Sbjct: 118 LLDDPACVALMTEFIEREPALW 139


>gi|303327264|ref|ZP_07357706.1| cytidine/deoxycytidylate deaminase family protein [Desulfovibrio
           sp. 3_1_syn3]
 gi|302863252|gb|EFL86184.1| cytidine/deoxycytidylate deaminase family protein [Desulfovibrio
           sp. 3_1_syn3]
          Length = 216

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 44/129 (34%), Gaps = 40/129 (31%)

Query: 30  SVACLIVKDGIVIGRGV---------------------------TAYGGCPHAEVQALEE 62
            V  + VKD  ++  G                                   HAE   + +
Sbjct: 76  RVGAVAVKDKRILATGYNGAPAGVPHCLEVGCLREQLGIPSGQRHEICRGLHAEQNVIIQ 135

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G   +GA  Y T  PC        C++ +I CGIRR+    D PD   +      L
Sbjct: 136 AAVHGINIQGAELYCTTHPC------VLCSKMLINCGIRRIYYAEDYPDDLAT----AML 185

Query: 120 SQKGIIVDR 128
            + G+ V++
Sbjct: 186 REAGVTVEQ 194


>gi|302529650|ref|ZP_07281992.1| guanine deaminase [Streptomyces sp. AA4]
 gi|302438545|gb|EFL10361.1| guanine deaminase [Streptomyces sp. AA4]
          Length = 162

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 14/102 (13%)

Query: 1   MPVS---SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCP 53
           M VS     +  +++  +R +  +V           L+VKDG ++  GV           
Sbjct: 1   MTVSIDADVERAWLAECVRIAEKNVADGGG--PFGALVVKDGEIVATGVNRVTPSLDPTA 58

Query: 54  HAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQ 90
           HAEV A+  A +        G     + EPC     S   A+
Sbjct: 59  HAEVVAIRAACQALGTFSLAGCVLVSSCEPCPMCLASSLWAR 100


>gi|126699509|ref|YP_001088406.1| putative phage-related deoxycytidylate deaminase (putative late
           competence protein) [Clostridium difficile 630]
 gi|254975491|ref|ZP_05271963.1| putative phage-related deoxycytidylate deaminase (putative late
           competence protein) [Clostridium difficile QCD-66c26]
 gi|255092879|ref|ZP_05322357.1| putative phage-related deoxycytidylate deaminase (putative late
           competence protein) [Clostridium difficile CIP 107932]
 gi|255306890|ref|ZP_05351061.1| putative phage-related deoxycytidylate deaminase (putative late
           competence protein) [Clostridium difficile ATCC 43255]
 gi|255314620|ref|ZP_05356203.1| putative phage-related deoxycytidylate deaminase (putative late
           competence protein) [Clostridium difficile QCD-76w55]
 gi|255517294|ref|ZP_05384970.1| putative phage-related deoxycytidylate deaminase (putative late
           competence protein) [Clostridium difficile QCD-97b34]
 gi|255650401|ref|ZP_05397303.1| putative phage-related deoxycytidylate deaminase (putative late
           competence protein) [Clostridium difficile QCD-37x79]
 gi|306520380|ref|ZP_07406727.1| putative phage-related deoxycytidylate deaminase (putative late
           competence protein) [Clostridium difficile QCD-32g58]
 gi|115250946|emb|CAJ68774.1| putative dCMP deaminase [Clostridium difficile]
          Length = 145

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 32/118 (27%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA---------------YGG 51
             FM      +      T     V  +IV  +  ++  G                    G
Sbjct: 13  EYFMRLCETVAERG---TCDRAYVGAIIVNSENRIVSTGYNGSISGDKHCSEVGHEMRDG 69

Query: 52  ----CPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                 HAE  AL    + G   +  + YVT  PC +      C + II+ GI+ +  
Sbjct: 70  HCIRTIHAEQNALYYCAKEGISVKDCSIYVTHFPCLN------CTKAIIQAGIKHIYY 121


>gi|260683514|ref|YP_003214799.1| putative phage-related deoxycytidylate deaminase [Clostridium
           difficile CD196]
 gi|260687174|ref|YP_003218308.1| putative phage-related deoxycytidylate deaminase (putative late
           competence protein) [Clostridium difficile R20291]
 gi|260209677|emb|CBA63397.1| putative phage-related deoxycytidylate deaminase (putative late
           competence protein) [Clostridium difficile CD196]
 gi|260213191|emb|CBE04662.1| putative phage-related deoxycytidylate deaminase (putative late
           competence protein) [Clostridium difficile R20291]
          Length = 150

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 32/118 (27%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA---------------YGG 51
             FM      +      T     V  +IV  +  ++  G                    G
Sbjct: 18  EYFMRLCETVAERG---TCDRAYVGAIIVNSENRIVSTGYNGSISGDKHCSEVGHEMRDG 74

Query: 52  ----CPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                 HAE  AL    + G   +  + YVT  PC +      C + II+ GI+ +  
Sbjct: 75  HCIRTIHAEQNALYYCAKEGISVKDCSIYVTHFPCLN------CTKAIIQAGIKHIYY 126


>gi|194743340|ref|XP_001954158.1| GF18139 [Drosophila ananassae]
 gi|190627195|gb|EDV42719.1| GF18139 [Drosophila ananassae]
          Length = 160

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 23/114 (20%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE- 62
           A FM  A   +R      +    V C+ V    VI RG            HAE   ++  
Sbjct: 2   AAFMEEAFIEARRAR--DAGEVPVGCVFVLGDKVIARGGNEVNVHRNATRHAEFICIDAT 59

Query: 63  ----------AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
                     A +     T  VT+EPC        C+  +   G++ ++   ++
Sbjct: 60  LAYCREKRLPARQMFSEITVVVTVEPCIM------CSAALHTLGVKEIIYGCEN 107


>gi|254459248|ref|ZP_05072670.1| cytidine/deoxycytidylate deaminase family protein
           [Campylobacterales bacterium GD 1]
 gi|207084141|gb|EDZ61431.1| cytidine/deoxycytidylate deaminase family protein
           [Campylobacterales bacterium GD 1]
          Length = 152

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 23/76 (30%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPS------------VACLIVKDGIVIGRGVT--AY 49
           +    + +  A++           NP                +I KDG ++G G      
Sbjct: 81  TKTHRKHIRRAIKLGAH-------NPMQALKGHAPDGGFFGAVIYKDGKILGEGWNTVLK 133

Query: 50  GGCP--HAEVQALEEA 63
            G P  H E+ A+ +A
Sbjct: 134 EGDPSRHGEMNAIRQA 149


>gi|54294884|ref|YP_127299.1| hypothetical protein lpl1963 [Legionella pneumophila str. Lens]
 gi|148359559|ref|YP_001250766.1| dihydrofolate reductase [Legionella pneumophila str. Corby]
 gi|53754716|emb|CAH16203.1| hypothetical protein lpl1963 [Legionella pneumophila str. Lens]
 gi|148281332|gb|ABQ55420.1| dihydrofolate reductase [Legionella pneumophila str. Corby]
          Length = 181

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           PVI+++        +   +   +II    +    L++ L  +G+  + ++GG  +   F+
Sbjct: 74  PVIVMSS-----KPIQIPEHLQHIITVSNQSPPDLVSELSLQGIQHVYLDGGITIQG-FL 127

Query: 304 NSRLVDSIILYRSQIVIGEG 323
            + LV+ + +    ++IG G
Sbjct: 128 QNNLVNEMTITVIPVLIGSG 147


>gi|124025482|ref|YP_001014598.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
           marinus str. NATL1A]
 gi|123960550|gb|ABM75333.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
           marinus str. NATL1A]
          Length = 155

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAG- 64
           M+  L  +R  VG     P +A +I+ K G  IG G            HAE+ AL +A  
Sbjct: 1   MTRLLTKARL-VGERGEVP-IAAVILDKKGRCIGYGGNRRESMKDPLGHAELVALRQASW 58

Query: 65  ----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                     T  V LEPC      P CA  +I+  + +++   +DP     G  +    
Sbjct: 59  IKNDWRFNDCTLIVNLEPC------PMCAGALIQARMGKIIYGSEDPKRGALGGTINLAE 112

Query: 121 QK 122
            K
Sbjct: 113 HK 114


>gi|255101026|ref|ZP_05330003.1| putative phage-related deoxycytidylate deaminase (putative late
           competence protein) [Clostridium difficile QCD-63q42]
          Length = 145

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 32/118 (27%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA---------------YGG 51
             FM      +      T     V  +IV  +  ++  G                    G
Sbjct: 13  EYFMRLCETVAERG---TCDRAYVGAIIVNSENRIVSTGYNGSISGDKHCSEVGHEMRDG 69

Query: 52  ----CPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                 HAE  AL    + G   +  + YVT  PC +      C + II+ GI+ +  
Sbjct: 70  HCIRTIHAEQNALYYCAKEGISVKNCSIYVTHFPCLN------CTKAIIQAGIKHIYY 121


>gi|328463918|gb|EGF35436.1| hypothetical protein AAULH_01270 [Lactobacillus helveticus MTCC
           5463]
          Length = 358

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 61/181 (33%), Gaps = 43/181 (23%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------------- 53
             FM  AL  ++      +    V  ++VKD  +IG G      G P             
Sbjct: 9   QYFMMQALVIAQRSTCNRA---LVGSVLVKDNRIIGTGYNGSVSGQPHCDEVGHQMVDGH 65

Query: 54  -----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                H+E+ A+ +    G        YVT  PC +      C + + + G+R++++ + 
Sbjct: 66  CVRTIHSEMNAIIQCAKFGVSTDDTEIYVTHFPCYN------CCKSLFQAGVRKLIITLI 119

Query: 106 DPDVRVSGRG-------LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAV 158
              +R            +  L   G      M     I L    TR +     + + + +
Sbjct: 120 IATIRWQCSCFMIVGYHMNRLKSIG-----NMWKAWLINLKKMKTRFIWLFGLLAVFMTM 174

Query: 159 S 159
           +
Sbjct: 175 T 175


>gi|303245260|ref|ZP_07331544.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio fructosovorans JJ]
 gi|302493109|gb|EFL52971.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio fructosovorans JJ]
          Length = 152

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 42/116 (36%), Gaps = 18/116 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65
           M+ AL  +R           V  +++   G ++G      +T +    HAE+ AL +A  
Sbjct: 1   MALALEKARGAAAQGEA--PVGAVVLSAAGELLGAAGNAPITRHDPTAHAEILALRQAAA 58

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
                   G+   VTLEPC        C   +I   +  +V    DP        L
Sbjct: 59  HVGNYRLPGSIMAVTLEPC------VMCLGAMIHARVGLLVYGASDPRTGAIASML 108


>gi|126347662|emb|CAJ89376.1| putative DNA-binding protein [Streptomyces ambofaciens ATCC 23877]
          Length = 216

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 23/120 (19%)

Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
           P  +++        +S  ++TA L    + T   D V A   R +    +  + RD    
Sbjct: 100 PAFVVVTSS---PPES--VRTADLDWTFVTTGLRDAVTAARERAEAAARVRGEDRD---- 150

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
                      +++ GG A   S + + LVD++ L+ + +V+G G   +PL  G   +  
Sbjct: 151 -----------VILMGGGATVGSALEAGLVDALTLHLAPVVLGGG---TPLFTGGTPRTL 196


>gi|288919170|ref|ZP_06413508.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EUN1f]
 gi|288349417|gb|EFC83656.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EUN1f]
          Length = 156

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 43/117 (36%), Gaps = 20/117 (17%)

Query: 40  IVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQ 90
            V+GRG  A         HAEV AL  A          G T  VTLEPC        CA 
Sbjct: 29  QVLGRGHNAREATGDPTAHAEVIALRHAAAELGAWRLGGTTLVVTLEPC------TMCAG 82

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
            ++   + RVV    DP     G          L+ +  ++  + E E    L A+ 
Sbjct: 83  ALVLARVDRVVYGAVDPKAGAVGSLWDVVRDRRLNHRPEVISGVREQECSDQLAAFF 139


>gi|301058427|ref|ZP_07199448.1| cytidine and deoxycytidylate deaminase zinc-binding region [delta
           proteobacterium NaphS2]
 gi|300447483|gb|EFK11227.1| cytidine and deoxycytidylate deaminase zinc-binding region [delta
           proteobacterium NaphS2]
          Length = 159

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 47/148 (31%), Gaps = 23/148 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEA- 63
            M+ AL  ++     +     V  ++    G ++ R             HAE+ A+ +A 
Sbjct: 1   MMAQALLEAKKA--YSKGEVPVGAVLADAQGYILSRAHNQPISLCDPTAHAEILAIRKAC 58

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW- 118
                          T+EPC        C    I   +  V+    D     +G      
Sbjct: 59  SICGNYRLTRCLLVATIEPCIM------CMGAAIHSRVSTVIFGAHDVKGGAAGSLYDLS 112

Query: 119 ----LSQKGIIVDRMMESEGKIFLHAYL 142
               L+ +  IV  + E E +  + A+ 
Sbjct: 113 RDYRLNHRMEIVSGVREDECRELMRAFF 140


>gi|41406760|ref|NP_959596.1| hypothetical protein MAP0662c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118463808|ref|YP_880050.1| cytidine/deoxycytidylate deaminase [Mycobacterium avium 104]
 gi|41395110|gb|AAS02979.1| hypothetical protein MAP_0662c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118165095|gb|ABK65992.1| cytidine/deoxycytidylate deaminase [Mycobacterium avium 104]
          Length = 166

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 36/102 (35%), Gaps = 17/102 (16%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA-- 63
           F    +  +R +V         A +IV+DG V+               HAE+ A+  A  
Sbjct: 4   FARRTIDLARQNVAEGGR--PFATVIVQDGEVLAESANKAAQTNDPTAHAEILAIRAACL 61

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
               E    AT YV   PC      P C   +  C  R V+ 
Sbjct: 62  KLGTEHLVDATIYVLAHPC------PMCLGALYYCSPREVIF 97


>gi|156030997|ref|XP_001584824.1| hypothetical protein SS1G_14279 [Sclerotinia sclerotiorum 1980]
 gi|154700670|gb|EDO00409.1| hypothetical protein SS1G_14279 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 152

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 56/150 (37%), Gaps = 29/150 (19%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCPHA 55
           M   S    F + A+  ++  +G       +   +V ++G ++GRG            H 
Sbjct: 1   MSPLSDQEGF-AIAVEEAK--IGYEEGGVPIGAALVSREGKLLGRGHNMRVQKGSAIHHG 57

Query: 56  EVQALEEAGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           E  ALE +G       +G+T Y T                 +  GI RVVV  ++  +  
Sbjct: 58  ETSALENSGRLPASAYKGSTMYTT-------------TGACLLYGISRVVVGENNTFLGG 104

Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
                 +L Q+GI V  M   E +  +  +
Sbjct: 105 E----AYLKQRGIEVVNMQSKECQELMERF 130


>gi|296416059|ref|XP_002837698.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633581|emb|CAZ81889.1| unnamed protein product [Tuber melanosporum]
          Length = 334

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 44/130 (33%), Gaps = 44/130 (33%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPS---VACLIVKDGIVIGRGVTAYG----------- 50
           S+DA F+  A       +    +N     V C++V+   VI  G                
Sbjct: 179 SWDAYFIQLA------SLAACRSNCMKRRVGCVLVRGKRVISTGYNGTPRNLVNCNEGGC 232

Query: 51  -----GCP-----------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFI 92
                G             HAE  AL EAG E    GAT Y    PC        C+  I
Sbjct: 233 KRCNNGTEGGVGLMTCLCIHAEENALLEAGRERVGDGATLYCDTCPCL------TCSIKI 286

Query: 93  IECGIRRVVV 102
           ++ GI  VV 
Sbjct: 287 VQVGITEVVY 296


>gi|241950789|ref|XP_002418117.1| tRNA-specific adenosine deaminase subunit, putative; tRNA-specific
           adenosine-34 deaminase subunit, putative [Candida
           dubliniensis CD36]
 gi|223641456|emb|CAX43417.1| tRNA-specific adenosine deaminase subunit, putative [Candida
           dubliniensis CD36]
          Length = 280

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 25/172 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGV----TAYGGCPHAEVQALEE 62
           ++M+ +L      +    T   V+C++V  K   +I  G      +  G  HAE  AL+ 
Sbjct: 10  QYMATSLFVGYKALLNNET--PVSCIVVDSKSDKIISIGYNYTNHSLNGTQHAEFIALQR 67

Query: 63  AGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
             E+           YVT+EPC        CA ++ + GI +V+    +     +G  L 
Sbjct: 68  FTEQKPSIGYNDLILYVTVEPCIM------CASYLRQLGIGKVIFGCGNDRFGGNGTILP 121

Query: 118 WLSQKGIIVD------RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163
             S   +          +  +EG   L  +  +Q E   +  +K     ++ 
Sbjct: 122 IHSDTTLPNATYSSIGGICRTEGIQLLRNFYIQQNESAPNPKIKKNTDIESK 173


>gi|291296679|ref|YP_003508077.1| bifunctional deaminase-reductase domain-containing protein
           [Meiothermus ruber DSM 1279]
 gi|290471638|gb|ADD29057.1| bifunctional deaminase-reductase domain protein [Meiothermus ruber
           DSM 1279]
          Length = 196

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 1/85 (1%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             DL + ++ L  +    + V G A +  S + + LVD ++L  + I++G G    P  E
Sbjct: 111 GDDLLEAVSELRAQPGGYIYVYGSATLVRSLLAADLVDELLLTVAPILLGRGKTIFPTTE 170

Query: 332 GYLEKNFMCVRRDYFGSDVCLEYIG 356
                  +   +   G+ VC  Y+ 
Sbjct: 171 KMASFELVSSVKAKTGALVC-RYVR 194


>gi|218437707|ref|YP_002376036.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 7424]
 gi|218170435|gb|ACK69168.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 7424]
          Length = 185

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 52/159 (32%), Gaps = 39/159 (24%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCPHAEVQ----- 58
           S+D  F+  A + +      T     V  +IVKD  V+  G      G  H   Q     
Sbjct: 10  SWDEYFLMIA-KLA--ATRSTCLAFPVGAVIVKDRQVLATGYNGSPSGSVHCTAQGFCYP 66

Query: 59  --------------ALE----------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                         A+           + G    GA+ YVTLEPC        C + II 
Sbjct: 67  GLSSCDASSTLPSRAVHAEANAIAQAAKHGINTNGASIYVTLEPCI------SCLKLIIS 120

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
            GI+ V    D            +L    + + ++  SE
Sbjct: 121 AGIKEVFYETDFNKGEKVLVRDAFLKDGLVTLTKITLSE 159


>gi|313677530|ref|YP_004055526.1| bifunctional deaminase-reductase domain protein [Marivirga
           tractuosa DSM 4126]
 gi|312944228|gb|ADR23418.1| bifunctional deaminase-reductase domain protein [Marivirga
           tractuosa DSM 4126]
          Length = 179

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
           L ++L  +  +G   L ++GG     +F+   L+D + +    I++G G   SPL     
Sbjct: 98  LTEVLKQINEKGFHKLYIDGG-TTIRNFLKEDLIDEMKITTIPILLGGG---SPLFTDLP 153

Query: 335 EK-NFMCVRRDYFGSDV 350
           +K  F  +    F + V
Sbjct: 154 KKLKFELIESKTFLNQV 170


>gi|183985263|ref|YP_001853554.1| cytidine/deoxycytidylate deaminase [Mycobacterium marinum M]
 gi|183178589|gb|ACC43699.1| cytidine/deoxycytidylate deaminase [Mycobacterium marinum M]
          Length = 152

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 21/132 (15%)

Query: 29  PSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA------GEEARGATAYVTLEP 78
           P  A +I  DG  + R V A         HAE+ AL  A      G    GAT  VT+EP
Sbjct: 24  PIGAVVISADGTELARAVNAREELGDPTAHAEILALRAAARVLGDGWRLEGATLAVTVEP 83

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESE 133
           C        CA  ++   + R+V    +P     G          L+ +  +   ++  E
Sbjct: 84  C------TMCAGALVLARVARLVFGAWEPKTGAVGSLWDVVRDRRLNHRPQVRGGVLAQE 137

Query: 134 GKIFLHAYLTRQ 145
               L  +  RQ
Sbjct: 138 CAAPLEEFFGRQ 149


>gi|167038484|ref|YP_001666062.1| CMP/dCMP deaminase [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167038773|ref|YP_001661758.1| CMP/dCMP deaminase [Thermoanaerobacter sp. X514]
 gi|166853013|gb|ABY91422.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter sp. X514]
 gi|166857318|gb|ABY95726.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
          Length = 149

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 43/124 (34%), Gaps = 40/124 (32%)

Query: 31  VACLIVKDGIVIGRGVTAYGG---------------------------CPHAEVQALEEA 63
           V  ++V D  +I  G                                   HAE  A+ +A
Sbjct: 27  VGAILVVDKHIISTGYNGPPTGLAHCEETGCLREQLGIPSGERPELCRGVHAEQNAIIQA 86

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G   +GAT YV+  PC        CA+ +I  G++R+V   + PD        + L 
Sbjct: 87  ALHGVSTKGATLYVSASPCVI------CAKMLINAGVKRIVYEEEYPD----ELAFKLLK 136

Query: 121 QKGI 124
           +  I
Sbjct: 137 EANI 140


>gi|73748255|ref|YP_307494.1| putative deoxycytidylate deaminase [Dehalococcoides sp. CBDB1]
 gi|147669037|ref|YP_001213855.1| CMP/dCMP deaminase, zinc-binding [Dehalococcoides sp. BAV1]
 gi|289432306|ref|YP_003462179.1| CMP/dCMP deaminase zinc-binding protein [Dehalococcoides sp. GT]
 gi|73659971|emb|CAI82578.1| putative deoxycytidylate deaminase [Dehalococcoides sp. CBDB1]
 gi|146269985|gb|ABQ16977.1| CMP/dCMP deaminase, zinc-binding protein [Dehalococcoides sp. BAV1]
 gi|288946026|gb|ADC73723.1| CMP/dCMP deaminase zinc-binding protein [Dehalococcoides sp. GT]
          Length = 157

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 42/156 (26%), Gaps = 45/156 (28%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
           M   + D  F+  A   +     +      V  + V+D  ++  G               
Sbjct: 1   MSRPNVDEYFLKIAAVVAERSTCVRH---HVGAVAVRDKHILSSGYNGAPAGLTDCLELG 57

Query: 47  -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE   + +A   G    GAT Y T  PC        CA+
Sbjct: 58  CLRDQNGIPSGTRHEICRAVHAEQNVIIQASLHGTSLEGATVYATHTPC------VLCAK 111

Query: 91  FIIECGIR-RVVVCVDDPDVRVSGRGLQWLSQKGII 125
            +    I+  V       D       +    Q GI 
Sbjct: 112 MLTNARIKRYVSYGKYADD-----SFIDMFKQAGIE 142


>gi|326536808|ref|YP_004301240.1| dCMP deaminase [Aeromonas phage 65]
 gi|312263154|gb|ADQ53410.1| dCMP deaminase [Aeromonas phage 65]
          Length = 179

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 53/156 (33%), Gaps = 53/156 (33%)

Query: 31  VACLIVKDGIVIGRGVTA-YGGC----PHA------------------------------ 55
           V  +IVK+G VI  G      G      HA                              
Sbjct: 24  VGTVIVKNGRVISTGYNGTRAGGINPDEHAINMGWAERAVDGVRLYPKYEDEYSSWANTH 83

Query: 56  ----EVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
               E+ AL     +G+   GAT   +L PCS+      CA+ +   GI++V+       
Sbjct: 84  VIHSEMNALLYAARSGQSVDGATLVTSLSPCSN------CAKHMAAAGIKKVIY--HTLY 135

Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
            + +    + L  +GI    + + E  I  + Y  R
Sbjct: 136 SKSAEGWEKTLEDQGIE---VEQYESVIDFNNYHVR 168


>gi|170585310|ref|XP_001897427.1| tRNA-specific adenosine deaminase 2 [Brugia malayi]
 gi|158595106|gb|EDP33679.1| tRNA-specific adenosine deaminase 2, putative [Brugia malayi]
          Length = 192

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 23/114 (20%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAG 64
            F++ A   +   V        V C+ V +G  +  G      +     HAE+ ALE   
Sbjct: 13  HFLNRAFEIAVDAVANNEV--PVGCVFVFEGQEVAFGRNDVNRSKNPTYHAEMVALEMMK 70

Query: 65  -----------EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
                      +  R  T YVTLEPC        CA  +    +++++    + 
Sbjct: 71  QWCTDNGRELEDVMRCTTLYVTLEPCIM------CASALYHLHLKKILYGAANE 118


>gi|149914091|ref|ZP_01902623.1| cytidine and deoxycytidylate deaminase family protein [Roseobacter
           sp. AzwK-3b]
 gi|149812375|gb|EDM72206.1| cytidine and deoxycytidylate deaminase family protein [Roseobacter
           sp. AzwK-3b]
          Length = 157

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 36/102 (35%), Gaps = 16/102 (15%)

Query: 30  SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
            V  ++V   G ++ R             HAE+  + EA      E   G   YVTLEPC
Sbjct: 24  PVGAVLVDPKGRIVARAGNRTRELSDPTAHAEILVIREACAAVGSERLPGYALYVTLEPC 83

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +       CA  I    I R+     DP       G +  S 
Sbjct: 84  AM------CATAISAARIARLYYGASDPKSGGVAHGARVFSH 119


>gi|126432818|ref|YP_001068509.1| bifunctional deaminase-reductase-like protein [Mycobacterium sp.
           JLS]
 gi|126232618|gb|ABN96018.1| bifunctional deaminase-reductase-like protein [Mycobacterium sp.
           JLS]
          Length = 177

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 13/113 (11%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGVTSLLVEGGAAVAHSF 302
           P  +VT   D V A        + ++    D+ +L   L    G   + V GG  +A  F
Sbjct: 71  PTWVVTHRPDIVAA-------GHPVHTFAGDVTELHPELVAAAGGKDVWVVGGGELAAQF 123

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           + + LVD +I+  +   +G G   SP+    +   +  V        VC  + 
Sbjct: 124 VAASLVDEMIVSYAPCTLGAG---SPVLP--IRSEWELVESAVNREFVCARWR 171


>gi|15805819|ref|NP_294517.1| hypothetical protein DR_0793 [Deinococcus radiodurans R1]
 gi|6458507|gb|AAF10372.1|AE001934_3 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 182

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 69/205 (33%), Gaps = 40/205 (19%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA---QSDAILVGIGTVLAD 203
             R  +   IA S D +I   G     +       + H   A   + D +++G GT    
Sbjct: 1   MPRPPLLAFIACSLDGLIARPGGELDWLALAEEPGEDHGYAAFVSRVDTLVMGRGTFE-- 58

Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
               T R      ++ +R+I+                       + E D P         
Sbjct: 59  ----TVRDFPEWPYAGLRVIVLSR-------------------TLGEADLPARLHGL--- 92

Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
               +     +L  LL +L   G   + V+GG  V  SFI + L+D + + R  I++G+G
Sbjct: 93  ----LELHSGELPNLLPLLD--GAKGVYVDGG-QVLQSFIRAELLDELTVTRLPILLGQG 145

Query: 324 GIPSPLEEGYLEKNFMCVRRDYFGS 348
                      +  +  V+   F  
Sbjct: 146 R--PLFGPLEADVRWEHVQTRVFDR 168


>gi|327198164|ref|YP_004306740.1| putative dCMP deaminase [Pseudomonas phage KPP10]
 gi|297591690|dbj|BAJ09110.1| putative dCMP deaminase [Pseudomonas phage KPP10]
          Length = 129

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 28/111 (25%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----------------PH 54
           M  A  F+   VG+ +    V  +IV+   +I +G     G                  H
Sbjct: 1   MRCAESFAECSVGVRAK---VGAVIVQGNKIISQGYNGLPGGLEGPLENEEGVTRPEVRH 57

Query: 55  AEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           AE  A   L  + E A+GA  + T+ PC +      CA  I++ GI+RV  
Sbjct: 58  AEKNALLWLSCSQESAQGAWMFATMSPCEY------CAHDIVDAGIKRVYY 102


>gi|269120319|ref|YP_003308496.1| bifunctional deaminase-reductase domain protein [Sebaldella
           termitidis ATCC 33386]
 gi|268614197|gb|ACZ08565.1| bifunctional deaminase-reductase domain protein [Sebaldella
           termitidis ATCC 33386]
          Length = 188

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 3/94 (3%)

Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           I     +++ L T L  +  +++ + GGA   ++F+  +L+D   +    +++G G    
Sbjct: 89  IEFRNDEIEDLTTELKQKSKSNIWLLGGAETVNAFLEKKLIDEYRIAIVPVILGTG---I 145

Query: 328 PLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
           PL     E+N    +   +   V L+Y  K + +
Sbjct: 146 PLFTSGAEENLDFKQVTEYDGIVELKYEKKKMKI 179


>gi|295396384|ref|ZP_06806548.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294970771|gb|EFG46682.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 178

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 16/166 (9%)

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
                    + +    S D         S  +     +  + + R  +  ++VG GT+ A
Sbjct: 17  MYAFPSGPWVRMNFISSIDG-AATVDGLSGGLGDEHDQRLLRVQRLPAHCVMVGSGTLKA 75

Query: 203 D----------DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252
           +          D E   R +GL  H P  +++     +  +  +   A + PV +VT   
Sbjct: 76  EGYGAMRMSHADQEWRVR-HGLAAH-PTLVVVSNRLSVEPEDAMFVEAPVRPV-VVTSEA 132

Query: 253 DPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGA 296
            PV           ++    R     +++  L  RG+T +  EGG 
Sbjct: 133 APVGKRERLADVAEVVVAGERSVFPVRVVEELKARGLTHVHGEGGP 178


>gi|291521186|emb|CBK79479.1| Cytosine/adenosine deaminases [Coprococcus catus GD/7]
          Length = 159

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 43/111 (38%), Gaps = 18/111 (16%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGR----GVTAYGGCPHAEVQALEE 62
             ++  A+  S       S N   A L+V KDG +I       +T +    HAE Q +E 
Sbjct: 5   EAYLKRAIELSVKSR--ESGNTPFAALLVDKDGNIIMEQMNNEITEHKCTGHAETQLVER 62

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           A      E     T Y T EPC+       C+  I    I  VV  + + D
Sbjct: 63  ASHAYSKEFLWDCTLYTTAEPCAM------CSGAIYWGNIGHVVYAMTEKD 107


>gi|145345338|ref|XP_001417171.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577398|gb|ABO95464.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 170

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 43/123 (34%), Gaps = 20/123 (16%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVT--AYGGCP--HAEVQALEEAG 64
           M  AL  +    G     P +A ++V    G V+          G P  HAE+  +    
Sbjct: 1   MRRALALA-LDAGSQGEVP-IAAVLVDATTGEVVAEAANRCERDGDPTAHAEMLLIRLGA 58

Query: 65  EEARG------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           E+  G         YVTLEPC+       CA  I++  +  V     +  +   G     
Sbjct: 59  EKLGGWRHLKRTRMYVTLEPCAM------CAGAILQSRVGGVTYGARNALLGADGSWAAL 112

Query: 119 LSQ 121
           L  
Sbjct: 113 LRN 115


>gi|21229604|ref|NP_635521.1| deoxycytidylate deaminase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66766481|ref|YP_241243.1| deoxycytidylate deaminase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21111078|gb|AAM39445.1| deoxycytidylate deaminase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66571813|gb|AAY47223.1| deoxycytidylate deaminase [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 150

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 54/155 (34%), Gaps = 31/155 (20%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG-GCP------- 53
           +  +D RF   A   S W       N  V  ++  K G  +  G   +  G         
Sbjct: 1   MQKWDVRFCDLARYISAWSK---DPNAKVGAVLFSKKGGNVSIGYNGFPIGVEDSAERLT 57

Query: 54  ----------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                     HAEV A+  AG  A G+T YV  +P         CA  II+ GI+RVV  
Sbjct: 58  DKDVKLELVVHAEVNAIIAAGVRAEGSTIYVWGKPIC-----ARCAGPIIQAGIKRVVAL 112

Query: 104 V----DDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
                +    +          + GI VD    +E 
Sbjct: 113 APGESESHWDKSGKTARDMFIEAGITVDFYTANEP 147


>gi|327192975|gb|EGE59890.1| putative purine deaminase protein [Rhizobium etli CNPAF512]
          Length = 158

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 16/108 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA 63
             F+  A+  SR  +      P    ++VK+G VI R      + +    HAE+  ++ A
Sbjct: 5   EPFLREAIALSRSAIEQGGGEP-FGSVLVKNGEVILRAENSVFSGHDMTNHAEMNLVKLA 63

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
            +          T Y + EPC+       C+  I   GI  +V    +
Sbjct: 64  AQHYDTAFLADCTLYTSTEPCAM------CSGAIYWSGIGHMVFACSE 105


>gi|317484775|ref|ZP_07943674.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bilophila wadsworthia 3_1_6]
 gi|316923982|gb|EFV45169.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Bilophila wadsworthia 3_1_6]
          Length = 165

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 49/154 (31%), Gaps = 43/154 (27%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
           M   ++   FM+ A   +     L      V  + VKD  ++  G               
Sbjct: 1   MSRVAWPDYFMNIAHLVAERSTCLRR---RVGAVAVKDKRILATGYNGAPSKVAHCLDIG 57

Query: 47  -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE   + +A   G    GA  Y T +PC        C++
Sbjct: 58  CLREQLGVPSGQRHEICRGLHAEQNVIIQAAVHGISLAGAEVYCTHQPCLI------CSK 111

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            +I CGI ++      PD       +Q L++  I
Sbjct: 112 MLINCGITKIWYASGYPD----ELAMQMLNEADI 141


>gi|220936337|ref|YP_002515236.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997647|gb|ACL74249.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 173

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
              PV++++     V         +  +        ++L  L  RG+    ++GG     
Sbjct: 64  GDTPVVVLSHRG--VEIPPDLAATVECLAAP---PGEVLERLAARGLRHAYIDGG-KTIQ 117

Query: 301 SFINSRLVDSIILYRSQIVIGEG 323
            F++  L+D + L R  +++G G
Sbjct: 118 GFLSEGLIDELTLTRVPVLLGRG 140


>gi|268574948|ref|XP_002642453.1| Hypothetical protein CBG06863 [Caenorhabditis briggsae]
 gi|187033808|emb|CAP27096.1| hypothetical protein CBG_06863 [Caenorhabditis briggsae AF16]
          Length = 200

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 47/138 (34%), Gaps = 33/138 (23%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG---------------- 50
            RF+  A   S         N  V C+IV K+  ++  G   +                 
Sbjct: 55  QRFLRMAKVTSLRSK---DPNTQVGCVIVDKENCIVSVGYNGFPIGVDDDVFRWDKEDPE 111

Query: 51  -----GCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                   HAE+ A + +        T YVTL PC+       CAQ +I+  +++V    
Sbjct: 112 DNKHLYVVHAEMNAIINKRCATLHDCTVYVTLFPCNK------CAQMLIQSRVKKVYFLE 165

Query: 105 DDPDVRVSGRGLQWLSQK 122
           D  ++       + L   
Sbjct: 166 DRDELPFRAS-KKMLEHA 182


>gi|300786467|ref|YP_003766758.1| deaminase [Amycolatopsis mediterranei U32]
 gi|299795981|gb|ADJ46356.1| deaminase [Amycolatopsis mediterranei U32]
          Length = 160

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 20/104 (19%)

Query: 1  MPVS-SFDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG---- 51
          M  S S +  ++  A+R +        G          LIV+DG ++  GV         
Sbjct: 1  MTTSLSAEQAWLDEAVRIATRNVENGGG------PFGALIVRDGKIVSTGVNRVTANLDP 54

Query: 52 CPHAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQ 90
            HAEV A+  A +     +  G     + EPC     S   A+
Sbjct: 55 TAHAEVVAIRAACQELGTFKLDGCVLVSSCEPCPMCLSSALWAR 98


>gi|182437962|ref|YP_001825681.1| hypothetical protein SGR_4169 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326778598|ref|ZP_08237863.1| bifunctional deaminase-reductase domain protein [Streptomyces cf.
           griseus XylebKG-1]
 gi|178466478|dbj|BAG20998.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326658931|gb|EGE43777.1| bifunctional deaminase-reductase domain protein [Streptomyces cf.
           griseus XylebKG-1]
          Length = 188

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV-CL 352
           GGA +  SF  + L+D   +Y   +++G G       +    +    V    FG+ V  L
Sbjct: 124 GGADLLESFRRADLIDEYRIYVHPVILGRGRR--FFRDAEERQMLRLVETRTFGNGVAML 181

Query: 353 EY 354
            Y
Sbjct: 182 RY 183


>gi|302662333|ref|XP_003022823.1| hypothetical protein TRV_03047 [Trichophyton verrucosum HKI 0517]
 gi|291186788|gb|EFE42205.1| hypothetical protein TRV_03047 [Trichophyton verrucosum HKI 0517]
          Length = 298

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 25/74 (33%), Gaps = 18/74 (24%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG------------- 51
           ++D  FM  A   +            V C+IVKD  V+  G                   
Sbjct: 189 AWDQYFMQLA-SLAAQRSNCMKR--RVGCVIVKDNRVMSTGYNGTPRNMKNCNEGGFLST 245

Query: 52  --CPHAEVQALEEA 63
             C HAE  AL EA
Sbjct: 246 CLCMHAEENALLEA 259


>gi|326787188|gb|AEA07651.1| putative dihydrofolate reductase [uncultured bacterium]
          Length = 207

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           D+  LL  L   G     V+GGA    SFI   L+D I + +  I++G+G
Sbjct: 126 DIPALLGRLTSDGYKHAYVDGGAT-ITSFIQFGLLDEICVTQVPILLGDG 174


>gi|254441373|ref|ZP_05054866.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Octadecabacter antarcticus 307]
 gi|198251451|gb|EDY75766.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Octadecabacter antarcticus 307]
          Length = 151

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 36/102 (35%), Gaps = 16/102 (15%)

Query: 30  SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
            +  +IV   G+VI               HAE+ A+  A      E   G   YVTLEPC
Sbjct: 24  PIGAVIVSPTGLVIAAAGNRTRELNDPTAHAEILAIRAACAELGQERLTGHDIYVTLEPC 83

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                 P CA  I    + R+     DP      +  +  S 
Sbjct: 84  ------PMCAAAISNARLARLYYGASDPKSGGVAQAPRVFSH 119


>gi|240171878|ref|ZP_04750537.1| deaminase [Mycobacterium kansasii ATCC 12478]
          Length = 166

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 36/102 (35%), Gaps = 17/102 (16%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA-- 63
           F    +  +R +V         A +IVKDG ++               HAE+ A+ EA  
Sbjct: 4   FAQRTIDLARQNVAEGGR--PFATVIVKDGEILAESANKVAQTNDPTAHAEILAIREACT 61

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
               E   G T YV   PC      P C   +  C    VV 
Sbjct: 62  KLGTEHLVGTTIYVLAHPC------PMCLGSLYYCSPDEVVF 97


>gi|51247069|ref|YP_066952.1| dihydrofolate reductase [Desulfotalea psychrophila LSv54]
 gi|50878106|emb|CAG37962.1| probable dihydrofolate reductase [Desulfotalea psychrophila LSv54]
          Length = 199

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 64/207 (30%), Gaps = 40/207 (19%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITG----FISKNQVHLLRAQSDAILVGIGTVLADD 204
                + I VS D  I     G   +         +       A  DA+L+G  T     
Sbjct: 21  NMANIVFIGVSLDGYIADKDGGLEFLQCIPNPEHDELGFPEFMASIDALLMGRNTYET-- 78

Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
                             IL    +      +           V  N    L    + K 
Sbjct: 79  ------------------ILSFGGEWPYSKPVF----------VLSNSLTSLPEHLKGKG 110

Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
             II       +++   L  +G T+L ++GG  +  SF+   ++D +++ +  I++G G 
Sbjct: 111 ELIISGSV---EEVTQQLNQQGFTNLYIDGG-KLIQSFLKLDMIDELVISKIPILLGGG- 165

Query: 325 IPSPLEEGYLEKNFMCVRRDYFGSDVC 351
             S   +      F  V  +   + + 
Sbjct: 166 -TSLFGDLQSHLMFEHVSTEVLLNAIV 191


>gi|254474984|ref|ZP_05088370.1| cytosine deaminase [Ruegeria sp. R11]
 gi|214029227|gb|EEB70062.1| cytosine deaminase [Ruegeria sp. R11]
          Length = 152

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/130 (30%), Positives = 45/130 (34%), Gaps = 20/130 (15%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           MP  S     M  AL  +R         P  A LI  DG V+ +             HAE
Sbjct: 1   MPFRS----HMDVALSEAR-AAAERGEVPVGAALIAPDGTVVAQAGNRTRELSDPTAHAE 55

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           V  + EA      E   G   YVTLEPC+       CA  I    IRRV     DP    
Sbjct: 56  VLVIREACAAIGSERLNGYDLYVTLEPCAM------CAAAIAAARIRRVYYGASDPKSGG 109

Query: 112 SGRGLQWLSQ 121
              G    S 
Sbjct: 110 VAHGACVFSH 119


>gi|126729047|ref|ZP_01744861.1| deoxycytidylate deaminase [Sagittula stellata E-37]
 gi|126710037|gb|EBA09089.1| deoxycytidylate deaminase [Sagittula stellata E-37]
          Length = 152

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 29/123 (23%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCP----------- 53
           +D  F+  A+  +         +  V C++V +   ++G G   +               
Sbjct: 11  WDRFFLDMAVHVATASR---DPSTKVGCILVDEQRRLVGMGYNGFPRGVVDLPERYEDRP 67

Query: 54  -------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                  HAE  A L+       G+TAY+T  PCS+      CA  +I+ G++RVV    
Sbjct: 68  TKYLMVQHAEANAVLQSPSNSLAGSTAYLTAPPCSN------CAGLLIQAGVKRVVSLGC 121

Query: 106 DPD 108
           +PD
Sbjct: 122 NPD 124


>gi|297543681|ref|YP_003675983.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296841456|gb|ADH59972.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 147

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 38/108 (35%), Gaps = 36/108 (33%)

Query: 31  VACLIVKDGIVIGRGVTAYGG---------------------------CPHAEVQALEEA 63
           V  ++V D  +I  G                                   HAE  A+ +A
Sbjct: 27  VGAILVVDKHIISTGYNGPPTGLAHCEETGCLRDQLGIPSGERPELCRGVHAEQNAIIQA 86

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
              G   +GAT YV   PC        CA+ +I  G++R+V   + PD
Sbjct: 87  ALHGVSTKGATLYVNASPC------VMCAKMLINTGVKRIVYEEEYPD 128


>gi|284041078|ref|YP_003391008.1| bifunctional deaminase-reductase domain protein [Spirosoma linguale
           DSM 74]
 gi|283820371|gb|ADB42209.1| bifunctional deaminase-reductase domain protein [Spirosoma linguale
           DSM 74]
          Length = 182

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
            D    +  L  +    + + GG  +    +N+ L+D  I+  + + +G  GIP     G
Sbjct: 93  EDPATFVKSLKNQPGKDIWLVGGGQLNTILLNAGLIDQFIITLAPVSLGA-GIP-LFGPG 150

Query: 333 YLEKNFMCVRRDYF 346
            +E  F  ++ + F
Sbjct: 151 AVETQFKFIKSESF 164


>gi|190893255|ref|YP_001979797.1| purine deaminase [Rhizobium etli CIAT 652]
 gi|190698534|gb|ACE92619.1| putative purine deaminase protein [Rhizobium etli CIAT 652]
          Length = 158

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 16/108 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA 63
             F+  A+  SR  +      P    ++VK+G VI R      + +    HAE+  ++ A
Sbjct: 5   EPFLREAIALSRSAIEQGGGEP-FGSVLVKNGEVILRAENSVFSGHDMTNHAEMNLVKLA 63

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
            +          T Y + EPC+       C+  I   GI  +V    +
Sbjct: 64  AQHYDTAFLADCTLYTSTEPCAM------CSGAIYWSGIGHMVFACSE 105


>gi|218516430|ref|ZP_03513270.1| putative purine deaminase protein [Rhizobium etli 8C-3]
          Length = 158

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 16/108 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA 63
             F+  A+  SR  +      P    ++VK+G VI R      + +    HAE+  ++ A
Sbjct: 5   EPFLREAIALSRSAIEQGGGEP-FGSVLVKNGEVILRAENSVFSGHDMTNHAEMNLVKLA 63

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
            +          T Y + EPC+       C+  I   GI  +V    +
Sbjct: 64  AQHYDTAFLADCTLYTSTEPCAM------CSGAIYWSGIGHMVFACSE 105


>gi|87302789|ref|ZP_01085600.1| cytidine/deoxycytidylate deaminase family protein [Synechococcus
           sp. WH 5701]
 gi|87282672|gb|EAQ74630.1| cytidine/deoxycytidylate deaminase family protein [Synechococcus
           sp. WH 5701]
          Length = 169

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 52/131 (39%), Gaps = 19/131 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV----TAYGGCPHA 55
           +P+SS    +M   LR ++   G     P VA +++   G  +G G     T      HA
Sbjct: 7   LPLSSQ-QFWMERLLRMAQRA-GEAGEIP-VAAIVLDGAGRALGWGTNRRQTHQDPLGHA 63

Query: 56  EVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ AL +A            +  VTLEPC      P CA  +I+  + RVV    D    
Sbjct: 64  ELVALSQAARLIHDWRFNACSLLVTLEPC------PMCAGALIQARMGRVVFAAGDAKRG 117

Query: 111 VSGRGLQWLSQ 121
             G  L   + 
Sbjct: 118 ALGGCLNLAAD 128


>gi|302671281|ref|YP_003831241.1| CMP/dCMP deaminase zinc-binding domain-containing protein
           [Butyrivibrio proteoclasticus B316]
 gi|302395754|gb|ADL34659.1| CMP/dCMP deaminase zinc-binding domain-containing protein
           [Butyrivibrio proteoclasticus B316]
          Length = 172

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 45/168 (26%), Gaps = 32/168 (19%)

Query: 3   VSSFDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----H 54
           +   D  +M      +    +     T        ++V DG ++               H
Sbjct: 1   MGEIDENYMKRCYELAISAGKKG-FDTF-----GAVLVCDGKILEEAENTADFEKKIFGH 54

Query: 55  AEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD--- 106
           AE   + +   +        +  Y +  PC        C   I   G+ +VV  V     
Sbjct: 55  AEFNLVHKCANKYTDDILEKSVVYTSCAPC------ERCLAAIASLGVHKVVCGVSYKEF 108

Query: 107 ----PDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
               P    +      L Q GI +           +H +     E R 
Sbjct: 109 CKLLPFDYQAVDREGLLKQLGINMTLKESVLEDEGMHVFEWWGGEYRP 156


>gi|198431901|ref|XP_002131408.1| PREDICTED: similar to dCMP deaminase [Ciona intestinalis]
          Length = 191

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 50/150 (33%), Gaps = 34/150 (22%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV--------------------- 46
            FMS A   ++        +  V   IV D   ++G G                      
Sbjct: 33  YFMSVAFLSAQRSK---DPSTQVGACIVNDENKIVGIGYNGMPNGCHDDELPWSRTGDWL 89

Query: 47  -TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
            T Y    HAE+ A+  +      G   +V L PC+       CA+ II+ GI+ V    
Sbjct: 90  DTKYPYVCHAEMNAIMNKNCSSVSGCRIFVALFPCNE------CAKLIIQSGIKEVFYMS 143

Query: 105 D-DPDVRVSGRGLQWLSQKGIIVDRMMESE 133
           D   D        + L   G+   + +  +
Sbjct: 144 DKHKDRDYMIASRKLLDLAGVKYQQHIPKQ 173


>gi|198412532|ref|XP_002130499.1| PREDICTED: similar to dCMP deaminase [Ciona intestinalis]
          Length = 191

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 50/150 (33%), Gaps = 34/150 (22%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV--------------------- 46
            FMS A   ++        +  V   IV D   ++G G                      
Sbjct: 33  YFMSVAFLSAQRSK---DPSTQVGACIVNDENKIVGIGYNGMPNGCHDDELSWSRTGDWL 89

Query: 47  -TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
            T Y    HAE+ A+  +      G   +V L PC+       CA+ II+ GI+ V    
Sbjct: 90  DTKYPYVCHAEMNAIMNKNCSSVSGCRIFVALFPCNE------CAKLIIQSGIKEVFYMS 143

Query: 105 D-DPDVRVSGRGLQWLSQKGIIVDRMMESE 133
           D   D        + L   G+   + +  +
Sbjct: 144 DKHKDRDYMIASRKLLDLAGVKYQQHIPKQ 173


>gi|123424994|ref|XP_001306706.1| RibD C-terminal domain containing protein [Trichomonas vaginalis
           G3]
 gi|121888295|gb|EAX93776.1| RibD C-terminal domain containing protein [Trichomonas vaginalis
           G3]
          Length = 214

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 72/198 (36%), Gaps = 21/198 (10%)

Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGS-VPITGFISKNQVHLLRAQSDAILVGIGTVLA- 202
              +R  I + +  S D  I      +   ++        + L  ++D  + G  T+   
Sbjct: 1   MSAERPFIYIHMVTSLDGKIVGKFMETGNAMSALQDYMWTNAL-YKADGAMCGSKTITEM 59

Query: 203 --DDPELTCRLNGLQE--------HSPMRIILDPHFKLSLDSKIIKTALLAPVII---VT 249
             ++P L      + +          P  ++LD   K   +   +   L     I   ++
Sbjct: 60  GYNNPVLNPEETEVPDGDFIAEGAKVPFLVVLDSTGKDGWNQSHVNMPLSPTTTIIEVLS 119

Query: 250 ENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFINSR 306
           E   P      R+ NI+ I    +  ++  ++  L    GV  L + GGA V  S + + 
Sbjct: 120 EKASPQYRNYLRRLNISYIISGKEHVNIVPVVQKLKKVFGVNVLGILGGATVNWSVVEAG 179

Query: 307 LVDSIILYRSQIVIGEGG 324
           + D + +  S +  G+G 
Sbjct: 180 ICDEVSICLSAV--GDGA 195


>gi|322783203|gb|EFZ10789.1| hypothetical protein SINV_01360 [Solenopsis invicta]
          Length = 175

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 52/164 (31%), Gaps = 26/164 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           +M+ AL+ +     L +    V CL + +  VI  G            HAE+  +++  +
Sbjct: 6   WMNVALQKAEES--LRAGEVPVGCLFIYNNEVIATGNNTVNETCNATRHAEINCIDQVLK 63

Query: 66  EA-----------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
                        R     VT+EPC        C   +++  +  +V    +      G 
Sbjct: 64  FCKEKRVDYETVFRNLDVIVTVEPCIM------CMSALLQLQVHSIVYGCANDRFGGCGS 117

Query: 115 GL--QWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLK 155
            L  Q      I++   +   E    L  +            +K
Sbjct: 118 VLEVQKFYDPKIVIQGNVKGEEAMRLLQDFYKGVNPNAPESKVK 161


>gi|291303426|ref|YP_003514704.1| CMP/dCMP deaminase zinc-binding protein [Stackebrandtia nassauensis
           DSM 44728]
 gi|290572646|gb|ADD45611.1| CMP/dCMP deaminase zinc-binding protein [Stackebrandtia nassauensis
           DSM 44728]
          Length = 144

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 47/148 (31%), Gaps = 26/148 (17%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGC----PHAEVQALEEA-- 63
           M  AL  +        ++  +  ++   DGI +               HAE+ AL  A  
Sbjct: 1   MRRALAVAAES----GSDVPIGAVVYSPDGIELAAAHNLREATGDPTAHAELVALRRAAE 56

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-- 117
               G         VT+EPC        CA  I    I  VV    +P     G      
Sbjct: 57  VHGDGWRLSDCVLVVTVEPC------TMCAGAITLSRIGTVVFGAWEPKTGAVGSLWDVV 110

Query: 118 ---WLSQKGIIVDRMMESEGKIFLHAYL 142
               L+ +  +   ++E+E    L  + 
Sbjct: 111 RDRRLAHRPQVYSGVLEAECAALLRGFF 138


>gi|294155321|ref|YP_003559705.1| deoxycytidylate deaminase fusion protein [Mycoplasma crocodyli
           MP145]
 gi|291599901|gb|ADE19397.1| deoxycytidylate deaminase fusion protein [Mycoplasma crocodyli
           MP145]
          Length = 159

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 53/148 (35%), Gaps = 34/148 (22%)

Query: 5   SFDARFMSAALRFSR-WHVGLTSTNPSVA-CLIVKDGIVIGRGV---------------- 46
           ++D  F    +  ++   +     +  V  C+I  +  VIG G                 
Sbjct: 6   NWDTYF----ISLAKISSLRSKDPSTQVGACIINSEKKVIGLGYNGMPNGNDKDFPWGRD 61

Query: 47  ------TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                 T Y    HAEV A+     + + A  Y TL PC +      CA+ I++ GI  V
Sbjct: 62  GQSQKETKYPYVVHAEVNAILNTTVQPKNAILYTTLFPCIN------CAKVIVQAGISEV 115

Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
           +   D       G   ++L +   +  R
Sbjct: 116 IYEDDKYHDTEDGEMSRYLLKTCNVKTR 143


>gi|154416912|ref|XP_001581477.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121915705|gb|EAY20491.1| hypothetical protein TVAG_238630 [Trichomonas vaginalis G3]
          Length = 89

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 7/87 (8%)

Query: 278 LLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS-----PLEE 331
           +L+ L     + S+ V+GG  V  S + + LVD +    +    G     S     P + 
Sbjct: 1   MLSKLKNTFHLKSIAVQGGGMVNWSLLRAGLVDELSYVIAPTTDGRSTDVSFIRRNPEDT 60

Query: 332 GYLEKNFMCVRRDYFGSD-VCLEYIGK 357
                 F  +     G + V L Y  K
Sbjct: 61  DSPPLEFDLIDVQRVGDNGVWLRYAPK 87


>gi|312078286|ref|XP_003141672.1| tRNA-specific adenosine deaminase 2 [Loa loa]
 gi|307763164|gb|EFO22398.1| tRNA-specific adenosine deaminase 2 [Loa loa]
          Length = 205

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 24/119 (20%)

Query: 5   SFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
           + D   F++ A   +   V        V C+ V +G  +  G            HAE+ A
Sbjct: 21  NEDEVHFLNRAFEIAVDAVLNNEV--PVGCVFVFEGQEVAFGRNDVNRTKNPTYHAEMVA 78

Query: 60  LEEAG-----------EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           LE              +  R +T YVTLEPC        CA  +    +++++    + 
Sbjct: 79  LEMMKQWCMDNGHELEDVMRRSTLYVTLEPCIM------CASALYHLRLKKILYGAANE 131


>gi|254515088|ref|ZP_05127149.1| cytosine deaminase [gamma proteobacterium NOR5-3]
 gi|219677331|gb|EED33696.1| cytosine deaminase [gamma proteobacterium NOR5-3]
          Length = 166

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 20/153 (13%)

Query: 5   SFDARFMS-AALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG--GCP--HAEVQ 58
           S D + M   A   ++   G       V   +   +G ++  G       G P  H E  
Sbjct: 15  STDYQAMLGVAFEQAKR--GFEEGGVPVGAAMFDGNGKLLSVGRNRRVQEGDPSIHGETD 72

Query: 59  ALEEAG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
           A  +AG  +  R      TL PC +      C+  + +  I  VVV             L
Sbjct: 73  AFRKAGRQKNYRDCVLVSTLAPCWY------CSGLVRQFRIGTVVVGESQNFAGH----L 122

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            WL + G+ V  + +      + +++ R+ +  
Sbjct: 123 DWLREAGVRVIELNDPRCTALMASFIERRPDIW 155


>gi|223944391|gb|ACN26279.1| unknown [Zea mays]
          Length = 154

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 52/144 (36%), Gaps = 39/144 (27%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----------------GCP 53
           M+ A   +         N  V   +V ++GI++G G   +                 G P
Sbjct: 1   MAIAFLSAERSK---DPNRQVGACLVSQEGIILGIGYNGFPRGCSDDKLPWAKKSASGDP 57

Query: 54  ---------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                    HAEV A+       A G   YVT+ PC+       CA+ II+ G+  V+  
Sbjct: 58  LETKFPYVVHAEVNAILNTNHASAAGQKLYVTMFPCNE------CAKIIIQSGVSEVIYF 111

Query: 104 VDDPDVRVSG---RGLQWLSQKGI 124
           V+      +       + LS  G+
Sbjct: 112 VEKKIDNSAHVYVASHKLLSMAGV 135


>gi|323493550|ref|ZP_08098672.1| putative deoxycytidylate deaminase [Vibrio brasiliensis LMG 20546]
 gi|323312373|gb|EGA65515.1| putative deoxycytidylate deaminase [Vibrio brasiliensis LMG 20546]
          Length = 149

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 30/89 (33%), Gaps = 23/89 (25%)

Query: 31  VACLIVKDGIVIGRGVTAYGG-----------------CPHAEVQALEEAGEEARGATAY 73
           V  +I K   ++  G   Y                     HAE  A+  A  +  G   +
Sbjct: 27  VGAVITKQNRIVSVGFNGYPHGISDSAMTDDREMKYLKTLHAEENAILFAKRDLDGCEIW 86

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           VT  PC      P CA  II+ GI  V  
Sbjct: 87  VTHFPC------PNCAAKIIQTGISAVHC 109


>gi|325104248|ref|YP_004273902.1| bifunctional deaminase-reductase domain protein [Pedobacter saltans
           DSM 12145]
 gi|324973096|gb|ADY52080.1| bifunctional deaminase-reductase domain protein [Pedobacter saltans
           DSM 12145]
          Length = 206

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GGA     F+N+ LVD   ++ + + +G G
Sbjct: 142 GGANTIQQFLNAGLVDEFFIHIAPVFLGSG 171


>gi|260777313|ref|ZP_05886207.1| putative deoxycytidylate deaminase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606979|gb|EEX33253.1| putative deoxycytidylate deaminase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 150

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 30/89 (33%), Gaps = 23/89 (25%)

Query: 31  VACLIVKDGIVIGRGVTAYGG-----------------CPHAEVQALEEAGEEARGATAY 73
           V  +I K   ++  G   Y                     HAE  A+  A  +  G   +
Sbjct: 27  VGAVITKQNRIVSVGFNGYPHGISDSAMTDEREMKYLKTLHAEENAILFAKRDLDGCEIW 86

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           VT  PC      P CA  II+ GI  V  
Sbjct: 87  VTHFPC------PNCAAKIIQTGISAVHC 109


>gi|256751351|ref|ZP_05492230.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300913642|ref|ZP_07130959.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter sp. X561]
 gi|307723343|ref|YP_003903094.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter sp.
           X513]
 gi|320116879|ref|YP_004187038.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|256749733|gb|EEU62758.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300890327|gb|EFK85472.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter sp. X561]
 gi|307580404|gb|ADN53803.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter sp.
           X513]
 gi|319929970|gb|ADV80655.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 155

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 43/124 (34%), Gaps = 40/124 (32%)

Query: 31  VACLIVKDGIVIGRGVTAYGG---------------------------CPHAEVQALEEA 63
           V  ++V D  +I  G                                   HAE  A+ +A
Sbjct: 33  VGAILVVDKHIISTGYNGPPTGLAHCEETGCLREQLGIPSGERPELCRGVHAEQNAIIQA 92

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G   +GAT YV+  PC        CA+ +I  G++R+V   + PD        + L 
Sbjct: 93  ALHGVSTKGATLYVSASPCVI------CAKMLINAGVKRIVYEEEYPD----ELAFKLLK 142

Query: 121 QKGI 124
           +  I
Sbjct: 143 EANI 146


>gi|271966223|ref|YP_003340419.1| cytidine/deoxycytidylate deaminase [Streptosporangium roseum DSM
           43021]
 gi|270509398|gb|ACZ87676.1| cytidine/deoxycytidylate deaminase [Streptosporangium roseum DSM
           43021]
          Length = 167

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 37/102 (36%), Gaps = 17/102 (16%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA-- 63
           F    +  +R +V  T      A +IVKDG ++               HAE+ A+ EA  
Sbjct: 3   FAQRTVDIARRNV--TEGGRPFATVIVKDGEILAESANKVAQTSDPTAHAEILAIREACM 60

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
               E   G T YV   PC      P C   +  C    VV 
Sbjct: 61  RLGTEHLTGTTIYVLAHPC------PMCLGSLYYCSPDEVVF 96


>gi|218675888|ref|YP_002394707.1| putative dihydrofolate reductase [Vibrio splendidus LGP32]
 gi|218324156|emb|CAV25362.1| putative dihydrofolate reductase [Vibrio splendidus LGP32]
          Length = 188

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 73/216 (33%), Gaps = 48/216 (22%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPIT------GFISKNQVHLLRAQSDAILVGIGTVLAD 203
               + IA S D  I     G   +       G       H  R   DA+++G  T+   
Sbjct: 12  MSNIVFIATSLDGYIADKQGGLDWLQAIPNPDGDDMGYNAHTDR--IDALVMGRNTM--- 66

Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
           D  L+          P+ +       LS     +   L   V ++               
Sbjct: 67  DMVLSF-GIDWPYSKPVYV-------LSNTLNEVPQELEGKVFLIKGE------------ 106

Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
                      LK+++  L  +G+ +L ++GG     +F+   L+D +I+    +V+G G
Sbjct: 107 -----------LKQIVADLNNKGLKNLYIDGG-ITIQNFLKEDLIDELIISTIPVVLGGG 154

Query: 324 GIPSPLEEGYLEK-NFMCVRRDYFGSDVC-LEYIGK 357
              SPL    +   +F       +  ++    Y+ K
Sbjct: 155 ---SPLFGDLVSPVDFTLKGVTTYLDEIVQTHYLRK 187


>gi|254488088|ref|ZP_05101293.1| tRNA-specific adenosine deaminase [Roseobacter sp. GAI101]
 gi|214044957|gb|EEB85595.1| tRNA-specific adenosine deaminase [Roseobacter sp. GAI101]
          Length = 151

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 43/121 (35%), Gaps = 16/121 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG- 64
           FM+ AL  +R         P  A ++   G V+ R             HAEV A+  A  
Sbjct: 6   FMNIALEEARDAAER-GEVPVGAAVVSPQGQVVARSGNRTRELNDPTAHAEVLAIRAACA 64

Query: 65  ----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
               E   G   YVTLEPC+       CA  I    +  +     DP      +G +  S
Sbjct: 65  AAGSERLGGYALYVTLEPCAM------CAGAISAARVATLYYGASDPKSGGVAQGARVFS 118

Query: 121 Q 121
            
Sbjct: 119 H 119


>gi|218460046|ref|ZP_03500137.1| CMP/dCMP deaminase zinc-binding protein [Rhizobium etli Kim 5]
          Length = 187

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 17/108 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA 63
             F+  A+  S+  +           ++V+DG VI R      T +    HAE+  ++ A
Sbjct: 5   EPFLREAIALSKSAMANGDE--PFGSVLVRDGDVILRAENSVFTGHDMTNHAEMNLVKLA 62

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
            +          T Y + EPC+       C+  I   GI  +V    +
Sbjct: 63  AKHYDPAFLADCTLYTSTEPCAM------CSGAIYWSGIGHMVFACSE 104


>gi|171910555|ref|ZP_02926025.1| bifunctional deaminase-reductase domain protein [Verrucomicrobium
           spinosum DSM 4136]
          Length = 187

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 9/115 (7%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P  + T  + P +       +I  +  D R + + +      G   L V GG  +A  F 
Sbjct: 79  PTWVFTSRELPGIT----GADIRFVKGDVRPVHEEMKA-AADGKN-LWVVGGGDLAGQFY 132

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIGK 357
           +  L+D +IL    + +G+G   S      L            G   V L Y  K
Sbjct: 133 DEGLLDELILQVGSVTLGKG--KSLFPRTVLSPALRLTAVRQMGPSMVELRYEVK 185


>gi|54297914|ref|YP_124283.1| hypothetical protein lpp1969 [Legionella pneumophila str. Paris]
 gi|53751699|emb|CAH13121.1| hypothetical protein lpp1969 [Legionella pneumophila str. Paris]
          Length = 181

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           PVI+++        +   +   +II    +    L++ L  +G+  + ++GG  +   F+
Sbjct: 74  PVIVMSS-----KLIQIPEHLQHIITVSNQSPPDLVSELSLQGIQHVYLDGGITIQG-FL 127

Query: 304 NSRLVDSIILYRSQIVIGEG 323
            + LV+ + +    ++IG G
Sbjct: 128 QNNLVNEMTITVIPVLIGSG 147


>gi|332668415|ref|YP_004451203.1| bifunctional deaminase-reductase domain-containing protein
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332337229|gb|AEE54330.1| bifunctional deaminase-reductase domain protein [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 179

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 12/113 (10%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           PV I+T  + P             I     DLK+L+  L      ++  +GG  V ++ +
Sbjct: 74  PVYILTRTERPDK---------GSIKFYTGDLKELVFKLKSEPGKNIYCDGGGEVVNALL 124

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-LEYI 355
              L+D +I+    I++G  G+P   + G  E+    V    F   +  L Y+
Sbjct: 125 QDELIDELIISIIPILVGR-GVP-LFKNGRPEQKLKLVSSKAFDKGLVQLHYV 175


>gi|262203299|ref|YP_003274507.1| bifunctional deaminase-reductase domain-containing protein
           [Gordonia bronchialis DSM 43247]
 gi|262086646|gb|ACY22614.1| bifunctional deaminase-reductase domain protein [Gordonia
           bronchialis DSM 43247]
          Length = 186

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV-CL 352
           GGA +A    ++ L+D   L+    +IG G    P       ++   ++   FG+ V  L
Sbjct: 124 GGANLAGQAFDAGLIDECQLFVWPSIIGGGK---PALPTGTRRDLELLQERRFGNGVALL 180

Query: 353 EYI 355
            Y 
Sbjct: 181 RYR 183


>gi|187251580|ref|YP_001876062.1| deoxycytidylate deaminase [Elusimicrobium minutum Pei191]
 gi|186971740|gb|ACC98725.1| Deoxycytidylate deaminase [Elusimicrobium minutum Pei191]
          Length = 168

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 45/150 (30%), Gaps = 56/150 (37%)

Query: 31  VACLIVKDGIVIGRGVTAYG---------------------------------------- 50
           V  ++VKD  VI  G                                             
Sbjct: 26  VGAVLVKDNRVISIGYNGVPSGQCHCDDNFAEIYKKEFSSQYATLEEFLKSPDFFKVHGQ 85

Query: 51  ----GCPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                  HAE  A+    + G    GAT YVTL PC +      CA+ I+  GI RV   
Sbjct: 86  WSMDNELHAEQNAILFAAKNGISTAGATVYVTLSPCIN------CAKVIVSAGIERVYFL 139

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
                 +       +L++ GI   ++   E
Sbjct: 140 DLYDRSQEGNV---FLAKSGIECRQLTAEE 166


>gi|72381983|ref|YP_291338.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
           marinus str. NATL2A]
 gi|72001833|gb|AAZ57635.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
           marinus str. NATL2A]
          Length = 155

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA-- 63
           M+  L  +R  VG     P +A +I+ K G  IG G            HAE+ AL +A  
Sbjct: 1   MTRLLTKARL-VGERGEVP-IAAVILDKKGRCIGYGGNRRESMKDPLGHAELVALRQASW 58

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                     T  V LEPC      P CA  +I+  + +++   +DP     G  +    
Sbjct: 59  IKNDWRFNDCTLIVNLEPC------PMCAGALIQARMGKIIYGSEDPKRGALGGTINLAE 112

Query: 121 QK 122
            K
Sbjct: 113 HK 114


>gi|308175184|ref|YP_003921889.1| oxidoreductase [Bacillus amyloliquefaciens DSM 7]
 gi|307608048|emb|CBI44419.1| putative oxidoreductase [Bacillus amyloliquefaciens DSM 7]
 gi|328555155|gb|AEB25647.1| oxidoreductase [Bacillus amyloliquefaciens TA208]
 gi|328913513|gb|AEB65109.1| putative oxidoreductase [Bacillus amyloliquefaciens LL3]
          Length = 176

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 5/99 (5%)

Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
             L  R +++  I+ +  D  + L    G+    + + GG  +    +   LVD  I+  
Sbjct: 80  RTLTGRTEDVRFIHEEPADFIQALKRQDGK---RIWIVGGGDLLQPILKEELVDEFIIQV 136

Query: 316 SQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           + +++G  GIP     G  E          +     L Y
Sbjct: 137 APVLLGR-GIP-LFRPGETETALKLTDVRRYKQFAELRY 173


>gi|111021134|ref|YP_704106.1| tRNA-specific adenosine deaminase [Rhodococcus jostii RHA1]
 gi|110820664|gb|ABG95948.1| probable tRNA-specific adenosine deaminase [Rhodococcus jostii
           RHA1]
          Length = 123

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 21/120 (17%)

Query: 38  DGIVIGRGVTAYGG----CPHAEVQALEEA------GEEARGATAYVTLEPCSHYGRSPP 87
           DG+ + R V +         HAE+ AL  A      G    GAT  VTLEPC        
Sbjct: 6   DGVEVSRAVNSREAMSDPTAHAEIIALRAAARVYGDGWRLEGATLAVTLEPC------TM 59

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
           CA  ++   I RVV    +P     G     +  + +     +   ++E E    L  + 
Sbjct: 60  CAGALVLARISRVVFGAWEPKTGAVGSLWDVVRDRRLTHRPQVRGGVLEDECAGILEDFF 119


>gi|139438131|ref|ZP_01771684.1| Hypothetical protein COLAER_00672 [Collinsella aerofaciens ATCC
           25986]
 gi|133776328|gb|EBA40148.1| Hypothetical protein COLAER_00672 [Collinsella aerofaciens ATCC
           25986]
          Length = 231

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 5/111 (4%)

Query: 221 RIILDPHFKLSLDSKIIK--TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK- 277
            + +DPH KL  +S  ++        V ++TE          RK  I+ I     +L   
Sbjct: 83  YVSVDPHGKLGWESSTLRYVDTTAHVVEVLTEQVGNAYRAFLRKLGISYIIAGETELDHG 142

Query: 278 -LLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
             L+ L     + +L++ GG  +  SF+ + + D I +  +    G    P
Sbjct: 143 LALSKLKEEFNIETLMLGGGGVLNWSFLQAGMCDEISIVLAAAADGSPDTP 193


>gi|54302697|ref|YP_132690.1| putative deoxycytidylate deaminase [Photobacterium profundum SS9]
 gi|90414645|ref|ZP_01222617.1| putative deoxycytidylate deaminase [Photobacterium profundum 3TCK]
 gi|46916121|emb|CAG22890.1| putative deoxycytidylate deaminase [Photobacterium profundum SS9]
 gi|90324278|gb|EAS40850.1| putative deoxycytidylate deaminase [Photobacterium profundum 3TCK]
          Length = 149

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 40/120 (33%), Gaps = 30/120 (25%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPS--VACLIVKDGIVIGRGVTAYGG-------------- 51
            RF   A       VG  S +PS  V  +I +   ++  G   Y                
Sbjct: 7   QRFFQMA-EL----VGSWSKDPSTQVGAVITEHNRIVSVGFNGYPHGISDSANTDDRDMK 61

Query: 52  ---CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                HAE  A+  A  +  G   +VT  PC      P CA  II+ GI  V       D
Sbjct: 62  LLKTLHAEENAILFAKRDLSGCEIWVTHFPC------PNCAAKIIQTGISMVHCPEQSED 115


>gi|167846243|ref|ZP_02471751.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
           pseudomallei B7210]
          Length = 141

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 33/82 (40%), Gaps = 15/82 (18%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPCS 80
            V  +IV+   VI RG     G      HAE+ AL  A          G   YVTLEPC 
Sbjct: 66  PVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAALRAAARALRNYRMPGCELYVTLEPCL 125

Query: 81  HYGRSPPCAQFIIECGIRRVVV 102
                  C+  I+   I RVV 
Sbjct: 126 M------CSGAIMHARIARVVF 141


>gi|154251101|ref|YP_001411925.1| zinc-binding CMP/dCMP deaminase [Parvibaculum lavamentivorans DS-1]
 gi|154155051|gb|ABS62268.1| CMP/dCMP deaminase zinc-binding [Parvibaculum lavamentivorans DS-1]
          Length = 164

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 16/89 (17%)

Query: 30  SVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
            V  ++V  +G V+ R             HAE+ A+  A      E   G   YVTLEPC
Sbjct: 38  PVGAVVVDGEGRVLARAGNRTLELKDPTAHAELLAIRAACAEIGSERLIGCDLYVTLEPC 97

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           +       CA  I    IRR+     D  
Sbjct: 98  AM------CATAISFARIRRLYYGAADEK 120


>gi|189424806|ref|YP_001951983.1| CMP/dCMP deaminase zinc-binding [Geobacter lovleyi SZ]
 gi|189421065|gb|ACD95463.1| CMP/dCMP deaminase zinc-binding [Geobacter lovleyi SZ]
          Length = 156

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 49/158 (31%), Gaps = 43/158 (27%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
           M   S+D  F+   L  +     L      V  L+VKD  ++  G               
Sbjct: 1   MARPSWDQYFIDITLLVATRSTCLRR---QVGALLVKDRNILATGYNGTPSGIRHCEETG 57

Query: 47  -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE  A+ +A   G    G+T Y T  PC        C +
Sbjct: 58  CLRERLKVPSGERHELCRGLHAEQNAIIQAARHGVNIDGSTLYCTTMPCII------CTK 111

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
            +I  GI+R+V      D        + +   GI V  
Sbjct: 112 MLINAGIKRIVYAEGYAD----ELAREMVQDSGIEVVH 145


>gi|227500311|ref|ZP_03930378.1| competence protein ComEB family protein [Anaerococcus tetradius
           ATCC 35098]
 gi|227217597|gb|EEI82909.1| competence protein ComEB family protein [Anaerococcus tetradius
           ATCC 35098]
          Length = 148

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 32/118 (27%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV---------------TAYGG 51
             FM  A   +R     T     V C++V  +  ++  G                T   G
Sbjct: 10  EYFMKLAKTVARRG---TCDRAYVGCVLVNEENRIVSTGYNGSIKGNPHCDEVGHTMRDG 66

Query: 52  ----CPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                 HAE+ A+    + G   +    YVT  PC +      C + +I+ GI+++  
Sbjct: 67  HCIATIHAEMNAILYCAKEGIATKNTICYVTHFPCLN------CTKSLIQAGIKKIYY 118


>gi|148927737|ref|ZP_01811174.1| bifunctional deaminase-reductase domain protein [candidate division
           TM7 genomosp. GTL1]
 gi|147886911|gb|EDK72444.1| bifunctional deaminase-reductase domain protein [candidate division
           TM7 genomosp. GTL1]
          Length = 168

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 15/123 (12%)

Query: 234 SKIIKTALLA----PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
           ++  +T   A      I+ T   + +         +  +        +L+  L   G + 
Sbjct: 48  ARTFETIGRALPGRRTIVYTSKPESIT--------VEGVEATNESPTELVARLKNEGASG 99

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           + + GGA++   F+ S LVD + L    ++ G G    PL  G LE     V       +
Sbjct: 100 VAICGGASIYQLFMESGLVDEVYLTLEPLLFGTG---VPLFSGQLEVALQLVSLKKLNEN 156

Query: 350 VCL 352
             L
Sbjct: 157 TVL 159


>gi|260904511|ref|ZP_05912833.1| bifunctional deaminase-reductase domain protein [Brevibacterium
           linens BL2]
          Length = 187

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 74/214 (34%), Gaps = 53/214 (24%)

Query: 153 TLKIAVSQDNMIGMAGCGSVPIT--GFISKNQVHL-LRAQSDAILVGIGTVLADDPELTC 209
            + + +S D  I         +T  G  + +          DA+++G  T  A       
Sbjct: 11  VVFLGLSVDGRIARPDGDLEWLTSRGEAAGDAGFTPFVESVDAVMMGRKTYEA------- 63

Query: 210 RLNGLQEHS----PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
            +  +QE      P+ +I       +LD+         P IIV  + +            
Sbjct: 64  -IASIQEWPYLGRPIHVI-----STTLDA------DADPRIIVHRSPEAA---------- 101

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
                D  +L          G   + V+GGA V   F+ ++LVD + L +  ++IG+G  
Sbjct: 102 ----IDAAELS---------GCKRVYVDGGATVRW-FLAAKLVDELTLSQVPVLIGDG-- 145

Query: 326 PSPLEEGYLEKNFMCVRRDYF-GSDVCLEYIGKN 358
           PS       + +   VR     G  V   Y   +
Sbjct: 146 PSLFGSLGGDVDLEHVRTTVLDGGMVQTTYRVVD 179


>gi|145221035|ref|YP_001131713.1| bifunctional deaminase-reductase-like protein [Mycobacterium gilvum
           PYR-GCK]
 gi|315441993|ref|YP_004074872.1| dihydrofolate reductase [Mycobacterium sp. Spyr1]
 gi|145213521|gb|ABP42925.1| bifunctional deaminase-reductase-like protein [Mycobacterium gilvum
           PYR-GCK]
 gi|315260296|gb|ADT97037.1| dihydrofolate reductase [Mycobacterium sp. Spyr1]
          Length = 173

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLK-KLLTILVGRGVTSLLVEGGAAVAHSF 302
           P  +VT   D V A       +     D  DL   LL    GR    + V GG  +A  F
Sbjct: 71  PSWVVTHRPDIVAA----DHPVRTFAGDVVDLHPTLLDAAAGRN---VWVVGGGDLARQF 123

Query: 303 INSRLVDSIILYRSQIVIGEG 323
             + L+D +I+  +   +G G
Sbjct: 124 AAAGLIDEMIVSYAPCTLGAG 144


>gi|296450850|ref|ZP_06892600.1| cytidine/deoxycytidylate deaminase [Clostridium difficile NAP08]
 gi|296879147|ref|ZP_06903142.1| cytidine/deoxycytidylate deaminase [Clostridium difficile NAP07]
 gi|296260321|gb|EFH07166.1| cytidine/deoxycytidylate deaminase [Clostridium difficile NAP08]
 gi|296429690|gb|EFH15542.1| cytidine/deoxycytidylate deaminase [Clostridium difficile NAP07]
          Length = 150

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 32/118 (27%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA---------------YGG 51
             FM      +      T     V  +IV  +  ++  G                    G
Sbjct: 18  EYFMRLCETVAERG---TCDRAYVGAIIVNSENRIVSTGYNGSISGDKHCSEVGHEMRDG 74

Query: 52  ----CPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                 HAE  AL    + G   +  + YVT  PC +      C + II+ GI+ +  
Sbjct: 75  HCIRTIHAEQNALYYCAKEGISVKDCSIYVTHFPCLN------CTKAIIQSGIKHIYY 126


>gi|255655869|ref|ZP_05401278.1| putative phage-related deoxycytidylate deaminase (putative late
           competence protein) [Clostridium difficile QCD-23m63]
          Length = 145

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 32/118 (27%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA---------------YGG 51
             FM      +      T     V  +IV  +  ++  G                    G
Sbjct: 13  EYFMRLCETVAERG---TCDRAYVGAIIVNSENRIVSTGYNGSISGDKHCSEVGHEMRDG 69

Query: 52  ----CPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                 HAE  AL    + G   +  + YVT  PC +      C + II+ GI+ +  
Sbjct: 70  HCIRTIHAEQNALYYCAKEGISVKDCSIYVTHFPCLN------CTKAIIQSGIKHIYY 121


>gi|19076024|ref|NP_588524.1| cytosine deaminase (predicted) [Schizosaccharomyces pombe 972h-]
 gi|74626752|sp|O59834|FCYS_SCHPO RecName: Full=Probable cytosine deaminase; AltName: Full=Cytosine
           aminohydrolase
 gi|3136043|emb|CAA19074.1| cytosine deaminase (predicted) [Schizosaccharomyces pombe]
          Length = 162

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 15/113 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYGG--CPHAEVQ 58
           +S  D  ++  A++ S+        +P   C+IV   D +++  G     G    HAE +
Sbjct: 6   LSEKDLAYLREAIKVSQQAR-DEGQHP-FGCIIVDENDNVIMSAGNRVPDGDVTQHAETR 63

Query: 59  A---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           A   + +   +    T Y + EPC+       C+  I   GIRR++  + + +
Sbjct: 64  AVGLITKTRRDLEKCTLYTSTEPCAM------CSGAIFWSGIRRMIFGLSNEN 110


>gi|134115449|ref|XP_773438.1| hypothetical protein CNBI0520 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50256064|gb|EAL18791.1| hypothetical protein CNBI0520 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 224

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 56/202 (27%), Gaps = 39/202 (19%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAY----GGCPHAEVQ 58
             D  +M  ++                  +IV   +  ++  G  +         H EV 
Sbjct: 35  EVDLHWMRKSIEVMPPCHFNAY-----GSVIVNASNNELLCSGYNSQLEIGDPTEHGEVN 89

Query: 59  ALEEA-------GEEARGAT-------AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
           A+          G      T        Y T EPC   G +      I++ G +RV+   
Sbjct: 90  AIRNCVKKYTELGWTPAQITEIWPQSWIYTTAEPCPMCGST------ILQSGFKRVIYGT 143

Query: 105 DDPDVRVS-------GRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
             PD+              +WL +  ++            +  ++    E    +  +  
Sbjct: 144 SSPDLVSMGWTEYLVSVRNKWLRKAAVVQPGFGGGRPVTQVVGHVG-NNETDPRLAWQFN 202

Query: 158 VSQDNMIGMAGCGSVPITGFIS 179
           +      G    G   I   ++
Sbjct: 203 LDYPCPEGCHRHGEEQICKPVA 224


>gi|289643685|ref|ZP_06475797.1| CMP/dCMP deaminase zinc-binding [Frankia symbiont of Datisca
           glomerata]
 gi|289506518|gb|EFD27505.1| CMP/dCMP deaminase zinc-binding [Frankia symbiont of Datisca
           glomerata]
          Length = 163

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 46/136 (33%), Gaps = 21/136 (15%)

Query: 30  SVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE---------EARGATAYVTLEPC 79
            V  ++V  DG +IGRG  A          A   A              G T  VTLEPC
Sbjct: 33  PVGAVVVDADGTIIGRGRNAREAERDPTAHAEVVALRAAAARAGTWRLSGTTLVVTLEPC 92

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEG 134
           +       CA  +I   + R+V    DP    +G          L     ++  + E E 
Sbjct: 93  AM------CAGALIMARVDRLVYGAYDPRAGAAGSLWDTVRDPRLDHHTEVITGVREEEC 146

Query: 135 KIFLHAYLTRQVEKRS 150
              L  +   + + + 
Sbjct: 147 ARLLTDFFVARRKPQP 162


>gi|255935941|ref|XP_002558997.1| Pc13g05630 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583617|emb|CAP91632.1| Pc13g05630 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 165

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 55/174 (31%), Gaps = 32/174 (18%)

Query: 9   RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
            FM  AL      +  G T     V C++V +  ++G G+       +     ++     
Sbjct: 15  YFMKQALLMGEKAIQSGET----PVGCVLVHNDQIVGYGMNDTNRSMN-----VKMLQSH 65

Query: 67  ARGA----TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC---VDDPDVRVSGRGLQWL 119
            R A      YVT+EPC        CA  + +  IR  VV    +  P   +        
Sbjct: 66  PRSALQSTDLYVTVEPC------VMCASALKQYRIRNKVVDRSRLTGPSPSIDPSY---- 115

Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP 173
                +   + E E  + L  +  ++ EK  +   K     +            
Sbjct: 116 ----PVYGGLFEKEAIMLLRRFYIQENEKAPNPRPKKNRELNTRFENDEASPTW 165


>gi|78356822|ref|YP_388271.1| tRNA-adenosine deaminase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219227|gb|ABB38576.1| tRNA-adenosine deaminase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 172

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 38/119 (31%), Gaps = 20/119 (16%)

Query: 38  DGIVIGRGVTAYGG----CPHAEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPC 88
           DG V+G G            HAE+ A+ +A           A   VTLEPC        C
Sbjct: 55  DGAVLGSGRNRPIATCDPTAHAEILAIRQACIHTGNYRLDDAVLVVTLEPCHM------C 108

Query: 89  AQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
              II   +  VV    D         L  L       +   +  + E+E    L  + 
Sbjct: 109 TGAIIHARLAGVVYGASDKRAGAVDSCLDGLELPFHNHRPWYMSGVCEAECSRLLAEFF 167


>gi|170782870|ref|YP_001711204.1| tRNA-specific adenosine deaminase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169157440|emb|CAQ02629.1| tRNA-specific adenosine deaminase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 158

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 58/149 (38%), Gaps = 21/149 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
            R+M+ AL  +R     T   P  A ++   G+VIGRG            HAEV+AL  A
Sbjct: 10  ERWMAVALDEAR-ACAETGDVPVGAVVVDAAGVVIGRGRNLREARQDPTAHAEVEALRAA 68

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            E        GAT  VTLEPC        CA  I+   + RVV    D     +G     
Sbjct: 69  AEATGDRHLVGATLVVTLEPC------VMCAGAILAARVPRVVFGAWDEKAGAAGSLYDV 122

Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYL 142
           L       +  +   ++ +E    L  + 
Sbjct: 123 LRDRRLPHRAEVFAGVLAAECAAVLDDFF 151


>gi|156040950|ref|XP_001587461.1| hypothetical protein SS1G_11453 [Sclerotinia sclerotiorum 1980]
 gi|154695837|gb|EDN95575.1| hypothetical protein SS1G_11453 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 245

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 52/166 (31%), Gaps = 59/166 (35%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTA----YGGCPHAEVQAL-- 60
            FM  AL  +   +  T+  P V C++V      V+ RG+ A    Y G  HAE  A+  
Sbjct: 29  FFMGEALAMANLAL-NTNETP-VGCVLVDPVLKKVVARGMNATNRSYNGTRHAEFIAIDE 86

Query: 61  ----------------EEAG---------------------------EEARGATAYVTLE 77
                            EA                            E  +    YVT+E
Sbjct: 87  LLSSSLRSDCGSADETREAKRKREENGSEADHGQGGGSEISGRGYGPENMKNLDLYVTIE 146

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           PC        CA  + + GIR+V     +     +G  L      G
Sbjct: 147 PCIM------CASLLQQFGIRKVWYGAVNDKFGGNGGVLNIHISNG 186


>gi|33865610|ref|NP_897169.1| cytidine/deoxycytidylate deaminase family protein [Synechococcus
           sp. WH 8102]
 gi|33632780|emb|CAE07591.1| cytidine/deoxycytidylate deaminase family protein [Synechococcus
           sp. WH 8102]
          Length = 157

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 45/128 (35%), Gaps = 18/128 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHA 55
           M        +M   +  +R  V   S    VA +I+ + G  IG G            HA
Sbjct: 1   MEEQQLWTEWME--VLLARASVNGDSGEVPVAAVILDEQGRCIGHGRNRRERCQDPLGHA 58

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ AL +A            T  VTLEPC      P CA  +++  +  V+    D    
Sbjct: 59  ELVALSQAATIRGDWRFNPCTLLVTLEPC------PMCAGALVQARMGTVIFGATDRKRG 112

Query: 111 VSGRGLQW 118
             G  +  
Sbjct: 113 GLGGCINL 120


>gi|218663270|ref|ZP_03519200.1| CMP/dCMP deaminase zinc-binding protein [Rhizobium etli IE4771]
          Length = 157

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 17/108 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA 63
             F+  A+  S+  +           ++V+DG VI R      T +    HAE+  ++ A
Sbjct: 5   EPFLREAIALSKSAMANGDE--PFGSVLVRDGDVILRAENSVFTGHDMTNHAEMNLVKLA 62

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
            +          T Y + EPC+       C+  I   GI  +V    +
Sbjct: 63  AKHYDPAFLADCTLYTSTEPCAM------CSGAIYWSGIGHMVFACSE 104


>gi|94266763|ref|ZP_01290431.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [delta
           proteobacterium MLMS-1]
 gi|94270234|ref|ZP_01291686.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [delta
           proteobacterium MLMS-1]
 gi|93450891|gb|EAT01904.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [delta
           proteobacterium MLMS-1]
 gi|93452585|gb|EAT03162.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [delta
           proteobacterium MLMS-1]
          Length = 156

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 54/160 (33%), Gaps = 29/160 (18%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVAC--------LIVKDGIVIGRGVTAYGGC 52
           M  +  D ++M+     +            V          ++V DG    R +      
Sbjct: 1   MAKAQLDQQYMAL--ALAEAARAAERGEVPVGALLVAADATVLVADGN---RTIEYCDPA 55

Query: 53  PHAEVQALEE-----AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
            HAE+  L       A     GAT YVTLEPC        CA  +I+  I R+V    DP
Sbjct: 56  AHAEIVVLRRAAALLANHRLPGATLYVTLEPC------VMCAGALIQARIERLVYGAADP 109

Query: 108 DVRVSGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
                    Q      L+ +  +   ++  E  + L  + 
Sbjct: 110 KAGAIDSLFQLAADSRLNHRFEVDSGVLAEECGLLLRDFF 149


>gi|120401263|ref|YP_951092.1| bifunctional deaminase-reductase-like protein [Mycobacterium
           vanbaalenii PYR-1]
 gi|119954081|gb|ABM11086.1| bifunctional deaminase-reductase-like protein [Mycobacterium
           vanbaalenii PYR-1]
          Length = 173

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 6/86 (6%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P  ++T        +     ++     D  DL  +L      G   + + GG  VA  F+
Sbjct: 71  PTWVLTHRPG----IIADGHDVQTFAGDVADLHPVLEE-AAAGKN-VWLVGGGDVAAQFV 124

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPL 329
            + LVD +I+  +   +G G    P+
Sbjct: 125 AAGLVDEMIVSYAPCTLGAGSRVLPM 150


>gi|94314022|ref|YP_587231.1| putative deaminase-reductase [Cupriavidus metallidurans CH34]
 gi|93357874|gb|ABF11962.1| putative deaminase-reductase (ribD domain) [Cupriavidus
           metallidurans CH34]
          Length = 177

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 54/174 (31%), Gaps = 37/174 (21%)

Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR---AQSDAILVGIGTVLADDPELTC 209
            + IA S D  I         +       + H      A  DAI++G GT       LT 
Sbjct: 5   HVFIATSLDGFIARPDGDIGWLLQRDDPAEDHGYMDFIADKDAIVMGRGTYEK---VLT- 60

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
            L       P+ ++L                   PV    E                 + 
Sbjct: 61  -LGDWAYDRPV-LVLSRQL------------AGTPVPAALEGK---------------VR 91

Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
                 +  L  L   GV  + V+GG  V  SF+   L+  +++    ++IG G
Sbjct: 92  FASLSPRDTLERLAAEGVRRVYVDGG-QVVQSFLRDGLIADLVVTTVPVLIGAG 144


>gi|116255371|ref|YP_771204.1| hypothetical protein pRL110171 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115260019|emb|CAK03117.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 235

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 7/115 (6%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA-FRKKNINIIYCDCRDLK--KL 278
           I +D    +      +       +I +   D P   LA      ++ +  +  D    +L
Sbjct: 89  IAIDRSGAVHYKGADLFGDH---IIALLGKDVPDSYLAELAADGVSYVVAETSDFDVGEL 145

Query: 279 LTIL-VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
           L ++    G+  +++EGGAA   + + S LVD +    +  +    G  S +E G
Sbjct: 146 LAVVNREFGIERIVLEGGAATNGALLASGLVDELNFIVAPALEARSGTDSVVELG 200


>gi|118619510|ref|YP_907842.1| cytidine/deoxycytidylate deaminase [Mycobacterium ulcerans Agy99]
 gi|118571620|gb|ABL06371.1| cytidine/deoxycytidylate deaminase [Mycobacterium ulcerans Agy99]
          Length = 152

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 48/132 (36%), Gaps = 22/132 (16%)

Query: 30  SVACL-IVKDGIVIGRGVTAY----GGCPHAEVQALEEA------GEEARGATAYVTLEP 78
            +  + I  DG  + R V A         HAE+ AL  A      G    GAT  VT+EP
Sbjct: 24  PIGAVMISADGTELARAVNAREELGDPTAHAEILALRAAARVLGDGWRLEGATLAVTVEP 83

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESE 133
           C        CA  ++   + R+V    +P     G          L+ +  +   ++  E
Sbjct: 84  C------TMCAGALVLARVARLVFGAWEPKTGAVGSLWDVVRDRRLNHRPQVRGGVLAQE 137

Query: 134 GKIFLHAYLTRQ 145
               L  +  RQ
Sbjct: 138 CAAPLEEFFGRQ 149


>gi|229818705|ref|YP_002880231.1| bifunctional deaminase-reductase domain protein [Beutenbergia
           cavernae DSM 12333]
 gi|229564618|gb|ACQ78469.1| bifunctional deaminase-reductase domain protein [Beutenbergia
           cavernae DSM 12333]
          Length = 186

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCL 352
           GG  +A   I + LVD+  +Y +  ++G G    P     +  +   V    F G  V L
Sbjct: 124 GGPVLAAHAIRAGLVDTFHMYVAPTIVGGGLRGLP---DGVRLDLELVDERRFAGGTVYL 180

Query: 353 EYIGK 357
            Y+ +
Sbjct: 181 RYVPR 185


>gi|307150161|ref|YP_003885545.1| bifunctional deaminase-reductase domain-containing protein
           [Cyanothece sp. PCC 7822]
 gi|306980389|gb|ADN12270.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC
           7822]
          Length = 173

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 4/95 (4%)

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
           V +   + ++ N++     D  + +  L      +L + GG  +   F+N+ L+D II+ 
Sbjct: 69  VFSRHHKNQDHNLVTFISTDPVEFVKQLKQASGKNLWLVGGGQMNTLFLNANLLDEIIIS 128

Query: 315 RSQIVIGEGGIPSPLEEGY-LEKNFMCVRRDYFGS 348
              +++GEG    PL  G   EK    ++   F S
Sbjct: 129 IHPVILGEG---IPLFAGNPQEKKLQLIKHQSFES 160


>gi|194874728|ref|XP_001973453.1| GG16092 [Drosophila erecta]
 gi|190655236|gb|EDV52479.1| GG16092 [Drosophila erecta]
          Length = 199

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 46/156 (29%), Gaps = 41/156 (26%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT----------------- 47
           +D  FM+ +L  ++           V   IV     ++  G                   
Sbjct: 24  WDDYFMATSLLSAKRSK---DPVTQVGACIVDSRNRIVAIGYNGFPRNCSDDVFPWSKAK 80

Query: 48  -AYGGC-----------PHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                             HAE  A L   G    G   Y TL PC+       CA+ II+
Sbjct: 81  KKRAHDFDPLEDKKLYVVHAEANAILNSIGMSLTGTRLYTTLFPCNE------CAKLIIQ 134

Query: 95  CGIRRVVVCVDDP-DVRVSGRGLQWLSQKGIIVDRM 129
            GI +V+   D   D        + L   G+   R 
Sbjct: 135 AGISQVLYLSDKYADKPTYRASKRMLDAVGVEYKRH 170


>gi|302386818|ref|YP_003822640.1| bifunctional deaminase-reductase domain protein [Clostridium
           saccharolyticum WM1]
 gi|302197446|gb|ADL05017.1| bifunctional deaminase-reductase domain protein [Clostridium
           saccharolyticum WM1]
          Length = 351

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 60/205 (29%), Gaps = 39/205 (19%)

Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG--FISK 180
           G +       E           +      + L I VS D  I         + G     +
Sbjct: 150 GCVEAGEYHREHVEKEPCDCQLEYGLERKVILYIGVSLDGYIADEEGRVDWLGGQVEAYE 209

Query: 181 NQVHLLRAQ--SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
                 R +   D +++G  T                      +++              
Sbjct: 210 GDYGYRRFEETVDTVIMGYRTYRQ-------------------VVM-------------- 236

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
             L   V   +  +  VL          I +     L+ LL++L  R   ++ + GGA +
Sbjct: 237 -ELSPEVWPYSGKEAYVLTHKDIVDRPGIHFT-REPLEHLLSVLKKREGKAIWICGGAQL 294

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323
            +  +N  L+D   L    +++G G
Sbjct: 295 VNQLMNKELIDEYHLTVMPVLLGGG 319


>gi|288905088|ref|YP_003430310.1| hypothetical protein GALLO_0887 [Streptococcus gallolyticus UCN34]
 gi|288731814|emb|CBI13379.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34]
          Length = 226

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 15/147 (10%)

Query: 222 IILDPHFKLSLDSKIIKTAL---LAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLK 276
           II+D    L     + +         +II +E            K+I+ I C  +  +L 
Sbjct: 85  IIVDTKGTL-----LWRDDSSYEKPHLIITSEAVSTDYLDYLDSKHISWIACGKEKINLA 139

Query: 277 KLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
           + + IL     V+ L V GG  +   F+ + L+D I L     + G  G+ S  +   +E
Sbjct: 140 RAMEILTEEFAVSRLAVVGGGHINAGFLQAGLLDEISLLIGLGIDGREGMASVFDGFSME 199

Query: 336 KNFMCVR----RDYFGSDVCLEYIGKN 358
                V     ++Y    + L Y  +N
Sbjct: 200 TEPTAVALKEVKNYPDGAIWLRYTPEN 226


>gi|126178396|ref|YP_001046361.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase [Methanoculleus
           marisnigri JR1]
 gi|125861190|gb|ABN56379.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase [Methanoculleus
           marisnigri JR1]
          Length = 221

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 23/155 (14%)

Query: 189 QSDAILVGIGTVL---------------ADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233
           +  A+L G  T                 AD      R +  +   P+ +I+D    L   
Sbjct: 35  EPGAVLAGSATARSGIELFTDVNETETEADRHRPEVRPDDPR---PVCVIVDSKGILKDL 91

Query: 234 SKIIKTALLAP--VIIVTENDDPVLALAFRKKNINIIY--CDCRDLKKLLTILVGR-GVT 288
               +        +++V+E          R++    I    D  DLK  +  L  R G++
Sbjct: 92  LHFYRNMEHTKDVIVLVSEATPEDYLDYLREREYPFIRRGKDRVDLKGAIRELGERFGIS 151

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            ++ + G  +    I   + D+I L    +V+GEG
Sbjct: 152 RVVSDTGPDLNDVLIREGIADTISLIVHPVVVGEG 186


>gi|253699654|ref|YP_003020843.1| bifunctional deaminase-reductase domain protein [Geobacter sp. M21]
 gi|251774504|gb|ACT17085.1| bifunctional deaminase-reductase domain protein [Geobacter sp. M21]
          Length = 186

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           PV + T    P    A    +I  +  D R +   + +    G  ++ V GG  +A  F 
Sbjct: 79  PVWVFTSRVLP----AIEGADIRFVQGDVRQVHDDMRLAA--GAKNIWVVGGGDLAGQFY 132

Query: 304 NSRLVDSIILYRSQIVIGEG 323
           ++ L+D +I+    + +G G
Sbjct: 133 DAGLLDELIIQIGSVTLGRG 152


>gi|294654357|ref|XP_456407.2| DEHA2A01584p [Debaryomyces hansenii CBS767]
 gi|199428817|emb|CAG84359.2| DEHA2A01584p [Debaryomyces hansenii]
          Length = 321

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 58/193 (30%), Gaps = 33/193 (17%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYG----GCPHAEVQALEEAG 64
           M+ AL      +    T   VAC++V      ++  G         G  HAE  A+++  
Sbjct: 11  MAIALFIGYRAMINNET--PVACILVSRSTNQILSIGYNDTNRSLNGTRHAEFIAIDKVM 68

Query: 65  EEAR---------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
            +                     YVT+EPC        CA  + + GI  VV    +   
Sbjct: 69  SQIPVHDRSDIAKIQGFFGDVILYVTVEPCIM------CASALKQIGIGYVVYGCGNDRF 122

Query: 110 RVSGRGLQWLSQKGII----VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG 165
             +G  L     K          ++ +E    L  +  ++ +   +  +K     +N   
Sbjct: 123 GGNGTILSIHQDKINKAYQSYGGVLRTEAVQLLRNFYIQENDSAPNPKIKKNKELENKEY 182

Query: 166 MAGCGSVPITGFI 178
                        
Sbjct: 183 PPNLDFKEYLSPE 195


>gi|302679520|ref|XP_003029442.1| hypothetical protein SCHCODRAFT_78305 [Schizophyllum commune H4-8]
 gi|300103132|gb|EFI94539.1| hypothetical protein SCHCODRAFT_78305 [Schizophyllum commune H4-8]
          Length = 158

 Score = 49.9 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 53/157 (33%), Gaps = 24/157 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAY----GGCPHAE 56
             DA  M  A   +    G       +   +V+       +I  G            H E
Sbjct: 7   DRDALGMQRAFEEAD--AGAKEGGIPIGSALVQHDDSGDHLIASGRNLRIQKGSATLHGE 64

Query: 57  VQALEEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           +  LE AG    G     T Y TL PC        C   I+   I RVV+  +   V   
Sbjct: 65  ICCLETAGRLKAGVYRKCTIYTTLSPCIM------CTGAILLYKIPRVVIGENANFVGGE 118

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
               + L Q G+ V  + ++  K  +  ++  + E+ 
Sbjct: 119 ----ELLKQHGVEVVVLDDNRCKELMAKFIKEKPEEW 151


>gi|127511710|ref|YP_001092907.1| deaminase-reductase domain-containing protein [Shewanella loihica
           PV-4]
 gi|126637005|gb|ABO22648.1| bifunctional deaminase-reductase domain protein [Shewanella loihica
           PV-4]
          Length = 178

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
           L  ++  L  +G   L ++GG     +F+   L+D +++ R  I++G GG+P    E   
Sbjct: 96  LVDIIADLNAKGFNELYIDGGVT-IQNFLKEDLIDEMVITRFPILLG-GGVP-LFGELES 152

Query: 335 EKNFMCVRRDYFGS 348
             +F  ++ +    
Sbjct: 153 SLSFNVIKSEVVLD 166


>gi|332671974|ref|YP_004454982.1| CMP/dCMP deaminase zinc-binding protein [Cellulomonas fimi ATCC
           484]
 gi|332341012|gb|AEE47595.1| CMP/dCMP deaminase zinc-binding protein [Cellulomonas fimi ATCC
           484]
          Length = 171

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 57/154 (37%), Gaps = 21/154 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
           V + DA  M  AL  +R  V  +   P  A ++   G V+ RG            HAEV 
Sbjct: 12  VQTADAWAMGLALDEARRAV-QSGDVPVGAVVVGPSGEVVARGHNVREALDDPTGHAEVV 70

Query: 59  ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL  A +          T  VTLEPC        CA  I+   + R+V+   DP     G
Sbjct: 71  ALRAAADRLGRWRLDDCTLVVTLEPCLM------CAGAIVLARVPRLVLGAWDPKAGACG 124

Query: 114 RGLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
                     L+ +  +V  +   E  + L  + 
Sbjct: 125 SQWDVVRDRRLNHRVEVVGGVRADECGLLLQHFF 158


>gi|84497829|ref|ZP_00996626.1| hypothetical protein JNB_17118 [Janibacter sp. HTCC2649]
 gi|84381329|gb|EAP97212.1| hypothetical protein JNB_17118 [Janibacter sp. HTCC2649]
          Length = 171

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 13/103 (12%)

Query: 244 PVIIVTEND-DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           P  + T  D  P   + F   ++  ++ +   +          G   L + GG  +   F
Sbjct: 70  PTWVFTHRDFAPSEQVRFTTADVTRVHAEMVAVA---------GDKDLWIVGGGDLVGQF 120

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
            +  L+D + +  + + +G G   +P+   ++E N   V R+ 
Sbjct: 121 HDVGLLDEVWVQYAPVTLGGG---APVLPRHVELNLEEVARNR 160


>gi|296102254|ref|YP_003612400.1| putative bifunctional deaminase-reductase [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295056713|gb|ADF61451.1| putative bifunctional deaminase-reductase [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 178

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           PV++++            K  +    C     K+ L  L  +    + ++GG  V  SF+
Sbjct: 69  PVLVLSSQLADTEVPEPLKGKVQFSRC---TPKEALAELAAQNAHRVYIDGG-QVIQSFL 124

Query: 304 NSRLV-DSIILYRSQIVIGEG 323
              LV D +I     ++IG G
Sbjct: 125 REGLVADMVITTV-PVLIGSG 144


>gi|291436541|ref|ZP_06575931.1| bifunctional deaminase-reductase domain-containing protein
           [Streptomyces ghanaensis ATCC 14672]
 gi|291339436|gb|EFE66392.1| bifunctional deaminase-reductase domain-containing protein
           [Streptomyces ghanaensis ATCC 14672]
          Length = 101

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
             D  +++  L   G T LL EGG  +    + +  +D + L  S ++     
Sbjct: 9   GVDPARVVPALADLGHTRLLTEGGPRLLGQLVAAGALDELCLTVSPMLTAGDA 61


>gi|114045649|ref|YP_736199.1| CMP/dCMP deaminase, zinc-binding protein [Shewanella sp. MR-7]
 gi|113887091|gb|ABI41142.1| CMP/dCMP deaminase, zinc-binding protein [Shewanella sp. MR-7]
          Length = 157

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 43/120 (35%), Gaps = 24/120 (20%)

Query: 15  LRFSRW---HVGLTSTNPSVACLIVKD-GIVIGRGVTAYGG----CPHAEVQALEEAG-- 64
           L  ++      GL       + +IV + G ++  GV           HAE+QA+  A   
Sbjct: 13  LALAQKEVEGTGL-----PFSAVIVDESGRIVAEGVNRVQALHDCTAHAEIQAIRMATLL 67

Query: 65  ---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                  G T   + EPC        C   I    I RV+V VD  +    G   +W  Q
Sbjct: 68  LKQVSLEGMTLIASGEPCGF------CYMAIQLAKISRVIVLVDRHEACQYGFDYRWTYQ 121


>gi|116621717|ref|YP_823873.1| CMP/dCMP deaminase, zinc-binding [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116224879|gb|ABJ83588.1| CMP/dCMP deaminase, zinc-binding [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 133

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 28/101 (27%)

Query: 27  TNPSVACLIV-KDGIVIGRGVTAYGGC------------------PHAEVQAL---EEAG 64
            N  + C+IV  +  +   G  ++                      HAE  A+     AG
Sbjct: 8   PNTQIGCVIVGPNHEIRSTGYNSFPRGIRDDVPERLVRPTKYLWIEHAERNAICNAARAG 67

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
               G T YV + PC        CA+ +++ GI  VV+  +
Sbjct: 68  TATEGCTIYVDIMPCMD------CARAVVQAGIVAVVISAE 102


>gi|326403669|ref|YP_004283751.1| tRNA-specific adenosine deaminase [Acidiphilium multivorum AIU301]
 gi|325050531|dbj|BAJ80869.1| tRNA-specific adenosine deaminase [Acidiphilium multivorum AIU301]
          Length = 154

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 38/102 (37%), Gaps = 16/102 (15%)

Query: 30  SVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
            V  ++V   G V+               HAE+ AL  A     G+  +G   +VTLEPC
Sbjct: 21  PVGAVVVDAGGSVLAAAGNEVEARGDPTAHAEILALRAAAQRRGGKFLQGCRLFVTLEPC 80

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                 P CA  I    I R+V    DP       G +  S 
Sbjct: 81  ------PLCAAAISLFRIDRLVFGAYDPKSGGVEHGPRVFSH 116


>gi|269119566|ref|YP_003307743.1| CMP/dCMP deaminase zinc-binding protein [Sebaldella termitidis ATCC
           33386]
 gi|268613444|gb|ACZ07812.1| CMP/dCMP deaminase zinc-binding protein [Sebaldella termitidis ATCC
           33386]
          Length = 160

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 40/117 (34%), Gaps = 19/117 (16%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGR----GVTAYGGCPHA 55
           M   S    ++  A+  S+      S N     ++V K+G +I       +TA     HA
Sbjct: 1   MSKKSH-EFYLERAIEVSKEAR--ESGNTPFGAILVDKEGNIIMEQGNIEITAKKCTGHA 57

Query: 56  EVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           E    E A      E     T Y T EPC        CA  I    I  V   + + 
Sbjct: 58  EASLAERASHEYSKEFLWDCTLYTTAEPCCM------CAGAIYWANIGTVAYAMTEK 108


>gi|332711139|ref|ZP_08431073.1| deoxycytidylate deaminase [Lyngbya majuscula 3L]
 gi|332350121|gb|EGJ29727.1| deoxycytidylate deaminase [Lyngbya majuscula 3L]
          Length = 190

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 42/131 (32%), Gaps = 45/131 (34%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-- 62
           ++D  F+  A + +      T     V  +IV++  ++  G     G P   +    +  
Sbjct: 7   NWDEYFLMMA-KLA--ATRSTCLAFPVGAVIVQNNQILATGY---NGSPSGSIHCTAQGY 60

Query: 63  -------------------------------AGEEARGATAYVTLEPCSHYGRSPPCAQF 91
                                           G    GA+ YVTLEPC        C + 
Sbjct: 61  CYPGLSSCDASRTMPSRAVHAEANAIAFAAKHGIATAGASIYVTLEPC------VSCLKL 114

Query: 92  IIECGIRRVVV 102
           II  GI++V  
Sbjct: 115 IISAGIKKVFY 125


>gi|308471917|ref|XP_003098188.1| hypothetical protein CRE_12208 [Caenorhabditis remanei]
 gi|308269339|gb|EFP13292.1| hypothetical protein CRE_12208 [Caenorhabditis remanei]
          Length = 194

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 53/156 (33%), Gaps = 33/156 (21%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG---------------- 50
            RF+  A   S         N  V C+IV KD  ++  G   +                 
Sbjct: 49  QRFLRMAKVTSLRSK---DPNTQVGCVIVDKDNCIVSVGYNGFPIGVDDDVFRWDKEDPE 105

Query: 51  -----GCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                   HAE+ A + +          YVTL PC+       CAQ +I+  +++V   +
Sbjct: 106 DNKHLYVVHAEMNAIINKRCATLHDCIVYVTLFPCNK------CAQMLIQSRVKKVYY-L 158

Query: 105 DDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
           +D D        + L    +  +++    GK     
Sbjct: 159 EDRDELAFRASKKMLDHAKLPYEQVEMPRGKYVFEC 194


>gi|322699644|gb|EFY91404.1| putative dCMP deaminase [Metarhizium acridum CQMa 102]
          Length = 379

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 48/149 (32%), Gaps = 42/149 (28%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG---------GCP-- 53
           +D  FM+ A   +            V C++V ++  VI  G              GCP  
Sbjct: 224 WDTYFMALA-SLAAQRSNCMKR--RVGCVLVGRERRVISTGYNGTPRGIRNCADGGCPRC 280

Query: 54  ----------------HAEVQALEEAG-EEAR-GATAYVTLEPCSHYGRSPPCAQFIIEC 95
                           HAE  AL EAG E  R G+  Y    PC        C+  I + 
Sbjct: 281 NEGNSSGVGLATCLCIHAEENALLEAGRERIRDGSVLYCDTCPCL------TCSIKICQV 334

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           GI  VV         +        SQ G+
Sbjct: 335 GISEVVYAHGYS---MDKEAAAVFSQAGV 360


>gi|296271485|ref|YP_003654117.1| CMP/dCMP deaminase zinc-binding protein [Thermobispora bispora DSM
           43833]
 gi|296094272|gb|ADG90224.1| CMP/dCMP deaminase zinc-binding protein [Thermobispora bispora DSM
           43833]
          Length = 152

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 50/147 (34%), Gaps = 23/147 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----CPHAEVQALEEAGE 65
           M  AL  +    G     P V  +++  DG V+               HAEV AL  A  
Sbjct: 9   MRLALAEAVRA-GERGEVP-VGAVVLGPDGTVLAAAGNDREASGDPTAHAEVLALRAAAR 66

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                   G T  VTLEPC        CA   +   + RVV    D     +G     L 
Sbjct: 67  ALGTWRLSGCTLVVTLEPC------TMCAGAAVLARVDRVVYGAADEKAGAAGSLWDVLR 120

Query: 121 QKGI-----IVDRMMESEGKIFLHAYL 142
            + +     +V  ++  E    L ++ 
Sbjct: 121 DRRLNHRPEVVLGVLAEECGAVLRSFF 147


>gi|89056237|ref|YP_511688.1| CMP/dCMP deaminase, zinc-binding [Jannaschia sp. CCS1]
 gi|88865786|gb|ABD56663.1| CMP/dCMP deaminase zinc-binding protein [Jannaschia sp. CCS1]
          Length = 150

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 42/127 (33%), Gaps = 35/127 (27%)

Query: 31  VACLIV--KDGIVIGRGVTAYGGC--------------------PHAEVQALEEA---GE 65
           V C+IV  +   V   G                            HAE  A+  A   G 
Sbjct: 29  VGCVIVGPQGNEVRATGYNGLPRGVSDTNEARFDRASGEKFFWGEHAERNAIYNAARIGV 88

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV----CVDDPDVRVSGRGLQWLSQ 121
             +G T YV   PC+       CA+ II+CGI RVV       D           + L +
Sbjct: 89  SLQGCTIYVNRFPCAD------CARAIIQCGIERVVSPPIPEADGALDYSFQVSKKMLEE 142

Query: 122 KGIIVDR 128
            GI V  
Sbjct: 143 AGISVAH 149


>gi|284990702|ref|YP_003409256.1| bifunctional deaminase-reductase domain-containing protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284063947|gb|ADB74885.1| bifunctional deaminase-reductase domain protein [Geodermatophilus
           obscurus DSM 43160]
          Length = 177

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
              G   + + GG  +A  F +  L+D +++  + + +G G   +PL    LE       
Sbjct: 106 AAAGDRDVWIVGGGDLAGQFADHGLLDEVVVAIAPVTLGGG---APLLPRRLE--LTRTE 160

Query: 343 RDYFGSDVCLEY 354
               G  VC+ Y
Sbjct: 161 EAVNGEFVCVRY 172


>gi|238855583|ref|ZP_04645885.1| ComE operon protein 2 [Lactobacillus jensenii 269-3]
 gi|260664775|ref|ZP_05865626.1| ComE operon protein 2 [Lactobacillus jensenii SJ-7A-US]
 gi|282932731|ref|ZP_06338139.1| ComE operon protein 2 [Lactobacillus jensenii 208-1]
 gi|313472663|ref|ZP_07813152.1| ComE operon protein 2 [Lactobacillus jensenii 1153]
 gi|238831800|gb|EEQ24135.1| ComE operon protein 2 [Lactobacillus jensenii 269-3]
 gi|239529376|gb|EEQ68377.1| ComE operon protein 2 [Lactobacillus jensenii 1153]
 gi|260561258|gb|EEX27231.1| ComE operon protein 2 [Lactobacillus jensenii SJ-7A-US]
 gi|281303141|gb|EFA95335.1| ComE operon protein 2 [Lactobacillus jensenii 208-1]
          Length = 160

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 58/156 (37%), Gaps = 34/156 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCP------- 53
            ++  FM  AL  S+      +    V  ++VKD  +IG G     T    C        
Sbjct: 7   PWEQYFMMQALVISQRSTCNRA---LVGSVLVKDKRIIGTGYNGSVTGQAHCDDVGHQMV 63

Query: 54  --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   H+E+  L +    G        YVT  PC +      C + +I+ GI+RV  
Sbjct: 64  DGHCVRTIHSEMNTLIQCAKNGVSTLNTEIYVTHFPCYN------CTKALIQAGIKRVNY 117

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138
             D  D  ++   +  L + G+ V+++      +  
Sbjct: 118 FFDYRDNPLA---VDLLKKTGVEVNQIKLDSSYVQN 150


>gi|330502248|ref|YP_004379117.1| deaminase-reductase domain-containing protein [Pseudomonas
           mendocina NK-01]
 gi|328916533|gb|AEB57364.1| deaminase-reductase domain-containing protein [Pseudomonas
           mendocina NK-01]
          Length = 192

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 63/206 (30%), Gaps = 48/206 (23%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITG------FISKNQVHLLRAQSDAILVGIGTVLA 202
              +   +  S D  I                    S    +   +  DA+L+G  T  A
Sbjct: 2   NPSLIYHVTSSLDGYIARPDGRLDWFDSLRQADEEYSFQYFY---SGIDALLMGRVTYEA 58

Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
                               +L          K        P +++T      LAL    
Sbjct: 59  --------------------LLQRGGPWPYPGK--------PCVVLTR-----LALPRAS 85

Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
             I + +C      + +  L   G   + + GG+ +A +   + L+D +++     ++G 
Sbjct: 86  DEIQLTHC---TPAQAVAALNEAGFQRIWLVGGSLLAGNCYTAGLIDEVVINLVPHLLGA 142

Query: 323 GGIPSPLEEGYLEKNFMCVRRDYFGS 348
           G    PL    +E++     +  F S
Sbjct: 143 G---VPLLATGMERSLTLSEQRRFDS 165


>gi|291300132|ref|YP_003511410.1| bifunctional deaminase-reductase domain-containing protein
           [Stackebrandtia nassauensis DSM 44728]
 gi|290569352|gb|ADD42317.1| bifunctional deaminase-reductase domain protein [Stackebrandtia
           nassauensis DSM 44728]
          Length = 187

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 42/114 (36%), Gaps = 8/114 (7%)

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
              P  + T    PV+       ++ ++  +   + + +T        ++ + GG  +A 
Sbjct: 78  GDTPCWVFTHRSLPVIP----GADVRMVSGEVAPVHEAMTDAAADK--NIWILGGGELAG 131

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
            F ++ L+D + L  + + +G G     L    L  +   V     G    L Y
Sbjct: 132 HFADAGLLDELNLMLAPVTLGAGA--PVLPRRLLSTDLRLVDMTRHGQMAQLTY 183


>gi|168059034|ref|XP_001781510.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162667051|gb|EDQ53690.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 155

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 57/161 (35%), Gaps = 17/161 (10%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEE--A 67
           A+  +R  +G     P  A L    G ++GRG            HAE  A  +AG +   
Sbjct: 5   AIAEARTGLGE-DGIPIGAALFDAGGQLLGRGRNRRVQENDPSVHAETDAFRKAGRQRSY 63

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           R      TL PC +      C+  + +  I  VVV     +      G+ WL + G+ V 
Sbjct: 64  RDTIMVTTLAPCWY------CSGLVRQFNIGTVVVG----ETVNFQGGVAWLRENGVQVV 113

Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG 168
            +   E    L +++       +        + +     AG
Sbjct: 114 DLQSRECADILSSFIAANPAIWNEDIGHDLETPNPNSSGAG 154


>gi|296282925|ref|ZP_06860923.1| tRNA-adenosine deaminase [Citromicrobium bathyomarinum JL354]
          Length = 152

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 44/128 (34%), Gaps = 20/128 (15%)

Query: 30  SVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG-----EEARGATAYVTLEPCS 80
            V  ++++ G VI +      T      HAEV AL  A      E   G   +VTLEPC+
Sbjct: 27  PVGAVVMRHGEVIAQAHNAPRTLADPTAHAEVLALRAAAKALGQERLEGCDLWVTLEPCA 86

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGK 135
                  CA  I    I R+     DP       G +         +  +   M E E  
Sbjct: 87  M------CAGAIAHARIGRLYYGAADPKGGAVAHGARVFDHPQCHHRPEVYSGMGEEEAA 140

Query: 136 IFLHAYLT 143
             L  +  
Sbjct: 141 KMLRGFFN 148


>gi|144575095|gb|AAZ43808.2| deoxycytidylate deaminase fusion protein [Mycoplasma synoviae 53]
          Length = 168

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 53/151 (35%), Gaps = 34/151 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA-YGGC---------- 52
           S+D  FM  A + S   +     +  V   IV +   +IG G      G           
Sbjct: 12  SWDDYFMGLA-KLS--ALRSKDPSTQVGACIVNRQNHIIGMGYNGMPNGEDELFPWESNS 68

Query: 53  -----------PHAEVQALEEAGEEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                       HAEV A+       +   AT Y +L PCS+      CA+ I++  I+ 
Sbjct: 69  SDEKDNKYPYVMHAEVNAILNTSVMLQNSNATIYTSLFPCSN------CAKIIVQSQIKE 122

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           +V   D           +++ + G +  R  
Sbjct: 123 LVYEDDKYHDTKDAEISRYILETGKVKVRKH 153


>gi|71894411|ref|YP_278519.1| deoxycytidylate deaminase fusion protein [Mycoplasma synoviae 53]
          Length = 169

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 53/151 (35%), Gaps = 34/151 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA-YGGC---------- 52
           S+D  FM  A + S   +     +  V   IV +   +IG G      G           
Sbjct: 13  SWDDYFMGLA-KLS--ALRSKDPSTQVGACIVNRQNHIIGMGYNGMPNGEDELFPWESNS 69

Query: 53  -----------PHAEVQALEEAGEEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                       HAEV A+       +   AT Y +L PCS+      CA+ I++  I+ 
Sbjct: 70  SDEKDNKYPYVMHAEVNAILNTSVMLQNSNATIYTSLFPCSN------CAKIIVQSQIKE 123

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           +V   D           +++ + G +  R  
Sbjct: 124 LVYEDDKYHDTKDAEISRYILETGKVKVRKH 154


>gi|54302128|ref|YP_132121.1| putative dihydrofolate reductase [Photobacterium profundum SS9]
 gi|46915549|emb|CAG22321.1| putative dihydrofolate reductase [Photobacterium profundum SS9]
          Length = 177

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 10/85 (11%)

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL-EEGY 333
           L  ++  L  +G  +L ++GG     +F+   L+D +I+    I++G G   SPL  E  
Sbjct: 96  LTTVVASLNEQGYNNLYIDGG-ITIQNFLKEDLIDEMIITTIPILLGGG---SPLFGELV 151

Query: 334 LEKNFMCVRRDYFGSDVCLEYIGKN 358
             ++F        GS++ +  + ++
Sbjct: 152 TPQSFELT-----GSEILINQLVQS 171


>gi|331002521|ref|ZP_08326039.1| hypothetical protein HMPREF0491_00901 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410337|gb|EGG89771.1| hypothetical protein HMPREF0491_00901 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 164

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 50/152 (32%), Gaps = 37/152 (24%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG------------- 50
           ++D  F+  A   +R        +  V   IV  D  ++  G   +              
Sbjct: 10  NWDEYFIGVAKLSARRSK---DPSTQVGACIVSEDNKILSMGYNGFPRGCSDEDFPWGKE 66

Query: 51  ------------GCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                          H+E+ A+    G    G+  YVTL PC+       CA+ II+ GI
Sbjct: 67  YEITDPYNAKYLYSTHSELNAILNYRGGSLEGSKIYVTLFPCNE------CAKAIIQAGI 120

Query: 98  RRVVVCVDDPD-VRVSGRGLQWLSQKGIIVDR 128
           + ++   D            + L+  G+    
Sbjct: 121 KTIIYEDDKYASSPSVRASKRMLNAAGVRYYE 152


>gi|307154689|ref|YP_003890073.1| CMP/dCMP deaminase zinc-binding protein [Cyanothece sp. PCC 7822]
 gi|306984917|gb|ADN16798.1| CMP/dCMP deaminase zinc-binding protein [Cyanothece sp. PCC 7822]
          Length = 185

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 44/134 (32%), Gaps = 39/134 (29%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCPHAEVQ----- 58
           ++D  F+  A + +      T     V  +IVKD  V+  G      G  H   Q     
Sbjct: 10  NWDEYFLMIA-KLA--ATRSTCLAFPVGAVIVKDRQVLATGYNGSPTGSVHCTAQGFCYP 66

Query: 59  --------------ALE----------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                         A+           + G    G+T YVTLEPC        C + II 
Sbjct: 67  GLTSCDASSTLPSRAVHAEANAIAQAAKHGINTNGSTIYVTLEPCI------SCLKLIIS 120

Query: 95  CGIRRVVVCVDDPD 108
            GI+ V    D   
Sbjct: 121 SGIKEVFYETDFNK 134


>gi|148260476|ref|YP_001234603.1| CMP/dCMP deaminase, zinc-binding [Acidiphilium cryptum JF-5]
 gi|146402157|gb|ABQ30684.1| tRNA-adenosine deaminase [Acidiphilium cryptum JF-5]
          Length = 151

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 38/102 (37%), Gaps = 16/102 (15%)

Query: 30  SVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
            V  ++V   G V+               HAE+ AL  A     G+  +G   +VTLEPC
Sbjct: 18  PVGAVVVDAGGSVLAAAGNEVEARGDPTAHAEILALRAAAQRRGGKFLQGCRLFVTLEPC 77

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                 P CA  I    I R+V    DP       G +  S 
Sbjct: 78  ------PLCAAAISLFRIDRLVFGAYDPKSGGVEHGPRVFSH 113


>gi|307209295|gb|EFN86380.1| tRNA-specific adenosine deaminase 2 [Harpegnathos saltator]
          Length = 175

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 50/164 (30%), Gaps = 26/164 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE--- 62
           +M AAL+ +     L      V CL V +   I  G            HAE+  +++   
Sbjct: 6   WMDAALQKAEES--LREGEVPVGCLFVYNNEAIATGNNTVNETCNATRHAEINCIDQVLR 63

Query: 63  -AGEE-------ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
              E+        R     VT+EPC        C   +++  +R +V    +        
Sbjct: 64  FCKEKQLEHETVFRNLDVIVTVEPCIM------CVSALLQLRVRSIVYGCANDRFGGCTS 117

Query: 115 GL---QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
            L    +   K  I   +   E    L  +            +K
Sbjct: 118 VLEVPNFYDPKITIQGNVKADEAMKLLKNFYKGTNPNAPESKVK 161


>gi|66824069|ref|XP_645389.1| hypothetical protein DDB_G0272030 [Dictyostelium discoideum AX4]
 gi|60473505|gb|EAL71449.1| hypothetical protein DDB_G0272030 [Dictyostelium discoideum AX4]
          Length = 225

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 20/122 (16%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP-HAEVQALEE 62
           ++ +++M  A+  +  +      N   A  IV K+G V   GV   G    H EV+A+  
Sbjct: 50  AYHSKYMQIAIDIAIEN------NSKFAAAIVHKNGTVACTGVNVGGSRMYHGEVKAIMN 103

Query: 63  AGEEARGAT-----AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
                + AT      Y T EPC      P C+  I+    ++V+      ++    R   
Sbjct: 104 CTTMYQQATWEDYSLYTTGEPC------PMCSAAIMWTKFQKVIFASYVSNMYC-ERCFN 156

Query: 118 WL 119
            L
Sbjct: 157 QL 158


>gi|294084707|ref|YP_003551465.1| CMP/dCMP deaminase, zinc-binding protein [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292664280|gb|ADE39381.1| CMP/dCMP deaminase, zinc-binding protein [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 149

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 37/102 (36%), Gaps = 16/102 (15%)

Query: 30  SVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
            VA  IV  DG V+               HAE+ A+  A     G    G   +VTLEPC
Sbjct: 24  PVAAAIVAPDGTVVALESNRMVRDGNALHHAEILAINAALAKTGGSRLDGYDLWVTLEPC 83

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +       CA  I    +RRV     D        G+++   
Sbjct: 84  AM------CAGAIAHARLRRVYFAAYDAKAGAVESGIRYFDH 119


>gi|95929569|ref|ZP_01312311.1| CMP/dCMP deaminase, zinc-binding [Desulfuromonas acetoxidans DSM
           684]
 gi|95134266|gb|EAT15923.1| CMP/dCMP deaminase, zinc-binding [Desulfuromonas acetoxidans DSM
           684]
          Length = 146

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 40/125 (32%), Gaps = 40/125 (32%)

Query: 31  VACLIVKDGIVIGRGV---------------------------TAYGGCPHAEVQALEEA 63
           V  +IVKD  V+  G                                   HAE  A+ +A
Sbjct: 18  VGAVIVKDKNVLTTGYNGTPSGVRHCQETGCLREKMQVPSGQRHELCRGLHAEQNAIIQA 77

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G    G T Y T  PC        CA+ +I  G+ R+V     PD        + L 
Sbjct: 78  AKHGVNISGGTLYCTNAPCVI------CAKMLINAGLSRIVYLDGYPDDLAE----ELLL 127

Query: 121 QKGII 125
           + GI 
Sbjct: 128 ESGIE 132


>gi|21229130|ref|NP_635052.1| deoxycytidylate deaminase [Methanosarcina mazei Go1]
 gi|20907690|gb|AAM32724.1| Deoxycytidylate deaminase [Methanosarcina mazei Go1]
          Length = 172

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 19/142 (13%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTA--YGGCP--HAEVQAL 60
           D   M  A+  ++           +  +I+  K   ++G+G         P  H E  A+
Sbjct: 20  DRDIMCIAVLLAQKS--YDEGGCPIGGVIIDSKTHRIVGKGHNTLVQDNDPYNHGETSAI 77

Query: 61  EEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
            +AG ++   AT + TL PC        CA  I      RVV+     DV  +    Q L
Sbjct: 78  RDAGRQDFSNATIFTTLSPCDV------CATLIYMRQFDRVVIG----DVTNASGTEQML 127

Query: 120 SQKGIIVDRMMESEGKIFLHAY 141
            +KG+ VD + +  G      Y
Sbjct: 128 REKGVKVDILEDPAGIALYAKY 149


>gi|320536962|ref|ZP_08036947.1| hypothetical protein HMPREF9554_01683 [Treponema phagedenis F0421]
 gi|320146197|gb|EFW37828.1| hypothetical protein HMPREF9554_01683 [Treponema phagedenis F0421]
          Length = 88

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 278 LLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
           +   L    G+  L+V GG  +  +F++   VD + +  + I  G+       
Sbjct: 1   MFEKLQELFGIRRLMVGGGGTINWTFLDRGFVDEVSMVIAPIANGDPNASRFF 53


>gi|39971965|ref|XP_367373.1| hypothetical protein MGG_07298 [Magnaporthe oryzae 70-15]
 gi|145019803|gb|EDK04031.1| hypothetical protein MGG_07298 [Magnaporthe oryzae 70-15]
          Length = 339

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 48/152 (31%), Gaps = 47/152 (30%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           ++DA FMS A   +            V C+++++  V+  G     G P           
Sbjct: 190 TWDAYFMSLA-SLAAQRSNCMKR--RVGCVLIREKRVVSTGY---NGTPRGLLNCGEGGC 243

Query: 54  -------------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFI 92
                              HAE  AL EAG +    G+  Y    PC        C+  I
Sbjct: 244 GRCNEGLSSGVGLATCLCLHAEENALLEAGRDRIRDGSILYCDTCPCL------TCSIKI 297

Query: 93  IECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            + GI  VV         +       L + G+
Sbjct: 298 AQVGISEVVYSQGYS---MDTDTAAVLREAGV 326


>gi|304439109|ref|ZP_07399028.1| competence protein ComEB [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372468|gb|EFM26055.1| competence protein ComEB [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 140

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 43/121 (35%), Gaps = 32/121 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV---------------TA 48
           S+D  FM      +      T     V C++V KD  ++  G                T 
Sbjct: 4   SWDEYFMEITEMVATRS---TCDRAFVGCILVNKDNRIVSTGYNGSLSGNKSCDEIGHTM 60

Query: 49  YGG----CPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
             G      HAE+ AL    + G   +G   YVT  PC +      C + +++ GI  + 
Sbjct: 61  RDGHCIATIHAEMNALLYCAKEGISVKGCKCYVTHFPCLN------CTKALLQAGITEIY 114

Query: 102 V 102
            
Sbjct: 115 Y 115


>gi|239942137|ref|ZP_04694074.1| hypothetical protein SrosN15_14142 [Streptomyces roseosporus NRRL
           15998]
 gi|239988601|ref|ZP_04709265.1| hypothetical protein SrosN1_14929 [Streptomyces roseosporus NRRL
           11379]
 gi|291445585|ref|ZP_06584975.1| bifunctional deaminase-reductase domain-containing protein
           [Streptomyces roseosporus NRRL 15998]
 gi|291348532|gb|EFE75436.1| bifunctional deaminase-reductase domain-containing protein
           [Streptomyces roseosporus NRRL 15998]
          Length = 203

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 55/167 (32%), Gaps = 37/167 (22%)

Query: 185 LLRAQSDAILVGIGTVL---ADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
              A++DA L G  T      D P +T     G+    P  +  D           +  A
Sbjct: 49  EWLAEADAFLFGRRTYENFARDWPRMTDHPFAGILNGLPKYVASDT----------LTEA 98

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
              P  I++ +    +A   R+          RDL           +      G A +A 
Sbjct: 99  TWKPTTILSGDVAAQVADLKRQ--------PGRDL----------QIH-----GSARLAQ 135

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
           S + + LVD + L  + +V+GEG    P        +    R    G
Sbjct: 136 SLLAAGLVDELRLAIAPVVVGEGRRLFPPGTTPTGLHLTEQRTTPAG 182


>gi|8778532|gb|AAF79540.1|AC023673_28 F21D18.9 [Arabidopsis thaliana]
          Length = 331

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 46/144 (31%), Gaps = 33/144 (22%)

Query: 33  CLIVKDGIVIGRGVTA----YGGCPHAEVQALE--------------EAGEEARGATAYV 74
           C+ ++DG VI  G            HAE++A++              +  E+      YV
Sbjct: 183 CVFLEDGKVIASGRNRTNETRNATRHAEMEAIDQLVGQWQKDGLSPSQVAEKFSKCVLYV 242

Query: 75  TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL-------SQKGIIVD 127
           T EPC        CA  +   GI+ V     +      G  L            KG    
Sbjct: 243 TCEPCIM------CASALSFLGIKEVYYGCPNDKFGGCGSILSLHLGSEEAQRGKGYKCR 296

Query: 128 RMMESEGKIFLHAYLTRQVEKRSH 151
             + +E  + L  +     +   +
Sbjct: 297 GGIMAEEAVSL--FKCFYEQGNPN 318


>gi|85705168|ref|ZP_01036268.1| hypothetical protein ROS217_04635 [Roseovarius sp. 217]
 gi|85670490|gb|EAQ25351.1| hypothetical protein ROS217_04635 [Roseovarius sp. 217]
          Length = 147

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 42/121 (34%), Gaps = 18/121 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA-- 63
           M  AL  +R           V  +IV   G+++ R             HAE+ A+  A  
Sbjct: 1   METALDEARAAALR--GEVPVGAVIVAPSGVLVARAGNRTRELSDPTAHAEILAIRAACA 58

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
               E   G   YVTLEPC+       CA  I    I R+     DP       G +  S
Sbjct: 59  ALGSERLTGHDLYVTLEPCAM------CASAIASARIARLYYGAADPKSGGVAMGARVFS 112

Query: 121 Q 121
            
Sbjct: 113 H 113


>gi|307609878|emb|CBW99403.1| hypothetical protein LPW_11791 [Legionella pneumophila 130b]
          Length = 154

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 23/105 (21%)

Query: 10  FMSAALRFSRW---HVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEE 62
           F+   +  +R    H G        ACLIV++G ++               HAEV A+  
Sbjct: 3   FIKRTIELARENVEHGGR-----PFACLIVQNGKILAEATNTVAQTHDPTAHAEVNAIRI 57

Query: 63  AG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           A      E       Y+   PC      P C   +  C  R+V+ 
Sbjct: 58  ATAKLGCEHLYDCDFYILAHPC------PMCLAAMYYCSPRKVIF 96


>gi|270261795|ref|ZP_06190067.1| hypothetical protein SOD_b00020 [Serratia odorifera 4Rx13]
 gi|270043671|gb|EFA16763.1| hypothetical protein SOD_b00020 [Serratia odorifera 4Rx13]
          Length = 185

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           PVI+++       AL    +  N +     D + ++T L   G   L ++GG  V   F+
Sbjct: 73  PVIVLSS-----RALDIPPRLQNRVRRLTGDPEAIVTRLANEGCRHLYIDGGNCV-QRFL 126

Query: 304 NSRLVDSIILYRSQIVIGEG 323
            + L++ + + R  +++G G
Sbjct: 127 QAGLINELTITRVPLLLGSG 146


>gi|119899277|ref|YP_934490.1| dihydrofolate reductase [Azoarcus sp. BH72]
 gi|119671690|emb|CAL95603.1| dihydrofolate reductase, putative [Azoarcus sp. BH72]
          Length = 181

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           PVI++T        L         +         L   L   GV  + V+GG      F+
Sbjct: 74  PVIVLTS-----RPLQLPAALPVTVSVSSETPAALTKRLEAEGVRRIYVDGG-ITIQRFL 127

Query: 304 NSRLVDSIILYRSQIVIGEG 323
            + L+D + +    +++G G
Sbjct: 128 AAGLIDDLTVTTIPVLLGSG 147


>gi|28901047|ref|NP_800702.1| putative deoxycytidylate deaminase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260362476|ref|ZP_05775409.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|260879896|ref|ZP_05892251.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Vibrio parahaemolyticus AN-5034]
 gi|260894571|ref|ZP_05903067.1| protein RibG [Vibrio parahaemolyticus Peru-466]
 gi|28809560|dbj|BAC62535.1| putative deoxycytidylate deaminase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308086410|gb|EFO36105.1| protein RibG [Vibrio parahaemolyticus Peru-466]
 gi|308091689|gb|EFO41384.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
           [Vibrio parahaemolyticus AN-5034]
 gi|308113341|gb|EFO50881.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 154

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 38/127 (29%), Gaps = 28/127 (22%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP-----------------HAEVQALEEAGEEARGATAY 73
           V  +I     ++  G   Y                     HAE  A+  +  +  G   +
Sbjct: 27  VGAVITNQNRIVSVGFNGYPHGVSDSVDTDERELKYLKTLHAEENAILFSKRDLDGCDIW 86

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS-----GRGLQWLSQKGIIVDR 128
           VT  PC      P CA  II+ GI RV       D                 Q G+ VD 
Sbjct: 87  VTHFPC------PNCAAKIIQTGISRVHCPEQSEDFLSRWGDKIQVSQDMFDQAGVEVDW 140

Query: 129 MMESEGK 135
           +   +  
Sbjct: 141 LPLDDIN 147


>gi|296166409|ref|ZP_06848841.1| possible guanine deaminase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295898170|gb|EFG77744.1| possible guanine deaminase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 166

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 36/102 (35%), Gaps = 17/102 (16%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA-- 63
           F    +  +R +V         A +IV DG V+               HAE+ A+ EA  
Sbjct: 4   FARRTIELARRNVADGGR--PFATVIVNDGEVLAESANMVAQANDPTAHAEILAIREACM 61

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
               E    +T Y+   PC      P C   +  C  + V+ 
Sbjct: 62  KLGTEHLVDSTVYLMAHPC------PMCLGSLYYCSPKEVIF 97


>gi|284034289|ref|YP_003384220.1| bifunctional deaminase-reductase domain-containing protein
           [Kribbella flavida DSM 17836]
 gi|283813582|gb|ADB35421.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
           DSM 17836]
          Length = 186

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
           +L+ GG+ +A +     L+D   +    +++G G    P  EG   +    V       
Sbjct: 118 ILLSGGSTLAAALTAEGLIDEYHVVVHPVLLGGGKRLFP--EGQSRRPLRLVESRLLDE 174


>gi|282883351|ref|ZP_06291944.1| ComE operon protein 2 [Peptoniphilus lacrimalis 315-B]
 gi|300813982|ref|ZP_07094275.1| putative ComE operon protein 2 [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|281296762|gb|EFA89265.1| ComE operon protein 2 [Peptoniphilus lacrimalis 315-B]
 gi|300511876|gb|EFK39083.1| putative ComE operon protein 2 [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 139

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 45/121 (37%), Gaps = 32/121 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG-GCP--------- 53
           S+D  FM      ++     T     V C++V  D  ++  G      G P         
Sbjct: 4   SWDEYFMEITQLVAQRS---TCDRAFVGCVLVNSDHRIVSTGYNGTASGNPHCIDVGHRM 60

Query: 54  ---------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                    HAE+ AL    + G  A+G+  YVT  PC +      C + +I+ GI  + 
Sbjct: 61  RDGHCIATIHAEMNALLYCAKEGIPAKGSICYVTHFPCLN------CTKALIQAGISAIY 114

Query: 102 V 102
            
Sbjct: 115 Y 115


>gi|291486308|dbj|BAI87383.1| hypothetical protein BSNT_05687 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 174

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 10/113 (8%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
              + T + D     +++ +++  I    R     L     +G   + + GGA + + F+
Sbjct: 71  TCYVFTGSPD-----SYQDEHVTFINEGARAFTARLKQ--EKGSN-IWIAGGAELVNDFM 122

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
               +D  I+    +V+G  GIP    E   E          FG  V L Y+ 
Sbjct: 123 KEDAIDEFIITVIPVVLGS-GIP-LFHELTNETKLRLKGTKQFGQAVQLHYVR 173


>gi|121715194|ref|XP_001275206.1| deoxycytidylate deaminase [Aspergillus clavatus NRRL 1]
 gi|119403363|gb|EAW13780.1| deoxycytidylate deaminase [Aspergillus clavatus NRRL 1]
          Length = 154

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 44/143 (30%), Gaps = 41/143 (28%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-------- 53
           M  A   ++    +      V C++V++  VI  G             GGCP        
Sbjct: 1   MQLAALAAQRSNCMKR---RVGCVLVRERRVISTGYNGTPRHLTNCNEGGCPRCNRGERG 57

Query: 54  ----------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
                     HAE  AL EAG E    G+  Y    PC        C   I + GI  VV
Sbjct: 58  GVGLSTCLCLHAEENALLEAGRERIREGSILYCDTCPCL------TCTVKIAQVGISEVV 111

Query: 102 VCVDDPDVRVSGRGLQWLSQKGI 124
                    +       L   G+
Sbjct: 112 YSQGY---NMDQESAAILKAAGV 131


>gi|114327121|ref|YP_744278.1| tRNA-specific adenosine deaminase [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315295|gb|ABI61355.1| tRNA-specific adenosine deaminase [Granulibacter bethesdensis
           CGDNIH1]
          Length = 178

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 16/102 (15%)

Query: 30  SVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEAGEEAR-----GATAYVTLEPC 79
            V  +++  +G ++ +        +    HAE+ A+ EA +        G   YVTLEPC
Sbjct: 53  PVGAVVISPEGYLLAQAHNLTEANHDASAHAEMLAMREAAKRLGSTRLIGCDLYVTLEPC 112

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                 P CAQ      IRR++    DP       G + L+ 
Sbjct: 113 ------PMCAQAASHFRIRRIIFGAYDPKGGGIEHGARVLNA 148


>gi|21227160|ref|NP_633082.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanosarcina
           mazei Go1]
 gi|20905494|gb|AAM30754.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanosarcina
           mazei Go1]
          Length = 223

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 65/175 (37%), Gaps = 26/175 (14%)

Query: 174 ITGFISKNQVHL-LRAQS--DAILVGIGTVLA---------------DDPELTCRLNGLQ 215
            TGF +   VH  +      DA++VG  T                  D  +     +  +
Sbjct: 17  TTGFDANLDVHYGILGSYEPDAMIVGSNTAKVGTQFFCEKIPPEDKEDFKKPDIHPDDTR 76

Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAP--VIIVTENDDPVLALAFRKKNINIIYC--D 271
            +    +I D    L     + + +  +   +++V+E          ++++ + I    +
Sbjct: 77  AY---WMIADSRGTLEGLMHVFRRSEYSKDIIVLVSEKTPESYINYLKERDYDFIRAGVE 133

Query: 272 CRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             D+++ L I   R G   ++ + G  +    +   LVD I L  +  ++G+ G 
Sbjct: 134 RVDVRQGLEIAGERYGFKLVVSDSGGILNSILLEQGLVDEISLVLTPEIVGKSGT 188


>gi|16080775|ref|NP_391603.1| oxidoreductase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221311684|ref|ZP_03593531.1| hypothetical protein Bsubs1_20116 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221316011|ref|ZP_03597816.1| hypothetical protein BsubsN3_20032 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320922|ref|ZP_03602216.1| hypothetical protein BsubsJ_19975 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221325206|ref|ZP_03606500.1| hypothetical protein BsubsS_20136 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|1176952|sp|P45862|YWJB_BACSU RecName: Full=Uncharacterized protein ywjB
 gi|853755|emb|CAA89863.1| Unknown [Bacillus subtilis subsp. subtilis str. 168]
 gi|2636259|emb|CAB15750.1| putative oxidoreductase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 174

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 10/113 (8%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
              + T + D     +++ +++  I    R     L     +G   + + GGA + + F+
Sbjct: 71  TCYVFTGSPD-----SYQDEHVTFINEGARAFTARLKQ--EKGSN-IWIAGGAELVNDFM 122

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
               +D  I+    +V+G  GIP    E   E          FG  V L Y+ 
Sbjct: 123 KEDAIDEFIITVIPVVLGS-GIP-LFHELTNETKLRLKGTKQFGQAVQLHYVR 173


>gi|91786197|ref|YP_547149.1| bifunctional deaminase-reductase-like protein [Polaromonas sp.
           JS666]
 gi|91695422|gb|ABE42251.1| bifunctional deaminase-reductase-like protein [Polaromonas sp.
           JS666]
          Length = 178

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P++++++     L     K  +       +D    L  L  + V  + V+GG  +  SF+
Sbjct: 69  PILVLSKQLAGTLVPEALKGKVRFSNLAPKD---ALEELTRQNVHRVYVDGG-RLVQSFL 124

Query: 304 NSRLVDSIILYRSQIVIGEG 323
              L++ +++    ++IG G
Sbjct: 125 RDGLINDMVITTVPVLIGSG 144


>gi|294950861|ref|XP_002786810.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239901164|gb|EER18606.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 232

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 42/121 (34%), Gaps = 16/121 (13%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA--- 63
           M AA+  +   V L    P     I ++ +V+               HAE+ A+  A   
Sbjct: 1   MEAAVLSATTGVKLKEGGP-FGACITRNDVVVCCAHNTFFSDRDPTCHAEMNAIRMAMHL 59

Query: 64  --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
              ++  G   Y + EPC      P C   I+  GIR + V +D      +G        
Sbjct: 60  LKTDDLAGCVIYSSFEPC------PMCWGAILASGIRLLYVGLDRHTAAKNGVEYLGFYD 113

Query: 122 K 122
            
Sbjct: 114 A 114


>gi|298246912|ref|ZP_06970717.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
           racemifer DSM 44963]
 gi|297549571|gb|EFH83437.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
           racemifer DSM 44963]
          Length = 196

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 30/76 (39%)

Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
           +TE    V          +       DL + +  L      +++  GGA  A S + + L
Sbjct: 87  ITEAQKVVFTKTLNMSEWHNTVLAKGDLAEEVNKLKNISGRNIITYGGATFASSLLQAGL 146

Query: 308 VDSIILYRSQIVIGEG 323
           VD + L  +  ++G G
Sbjct: 147 VDELHLIINPSILGSG 162


>gi|189219256|ref|YP_001939897.1| Cytosine/adenosine deaminase [Methylacidiphilum infernorum V4]
 gi|189186114|gb|ACD83299.1| Cytosine/adenosine deaminase [Methylacidiphilum infernorum V4]
          Length = 146

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 52/144 (36%), Gaps = 20/144 (13%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQALEEAGEEA-- 67
           A   ++  +G       +   +     V+GRG       G    H E+  LE A      
Sbjct: 8   AFEEAK--IGFEEGGIPIGACLAYKDRVLGRGRNRRVQLGSVIKHGELDCLENARRYTAK 65

Query: 68  --RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
             R A  Y TL PC        C+  I+  GI++VV+  +           + L Q G+ 
Sbjct: 66  IYREAILYTTLSPCWM------CSGAILLYGIKKVVIGENRNFKGPE----EILIQNGVE 115

Query: 126 VDRMMESEGKIFLHAYLTRQVEKR 149
           +  + + E    L +++    E  
Sbjct: 116 IIHLDDEECTRLLSSFIASNPELW 139


>gi|326389256|ref|ZP_08210824.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter ethanolicus JW
           200]
 gi|325994619|gb|EGD53043.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter ethanolicus JW
           200]
          Length = 147

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 43/124 (34%), Gaps = 40/124 (32%)

Query: 31  VACLIVKDGIVIGRGVTAYGG---------------------------CPHAEVQALEEA 63
           V  ++V D  +I  G                                   HAE  A+ +A
Sbjct: 27  VGAILVVDKHIISTGYNGPPTGLAHCEETGCLREQLGIPSGERPELCRGVHAEQNAIIQA 86

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G   +GAT YV+  PC        CA+ +I  G++R+V   + PD        + L 
Sbjct: 87  ALHGVSTKGATLYVSASPCVI------CAKMLINAGVKRIVYEEEYPD----ELAFKLLK 136

Query: 121 QKGI 124
           +  +
Sbjct: 137 EANV 140


>gi|302530974|ref|ZP_07283316.1| cytidine and deoxycytidylate deaminase [Streptomyces sp. AA4]
 gi|302439869|gb|EFL11685.1| cytidine and deoxycytidylate deaminase [Streptomyces sp. AA4]
          Length = 155

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 21/129 (16%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQA 59
             D   + AAL  +R           +  ++   DG  +     A         HAE+ A
Sbjct: 4   PDDTEAVRAALDAARAPGADV----PIGAVVFDPDGRPLAAARNARVELADPTAHAEILA 59

Query: 60  LEEA------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           L  A      G    G T  VTLEPC        CA  ++   + R+V    +P      
Sbjct: 60  LRAAAREFGDGWRLEGCTLAVTLEPC------TMCAGALVLARVARLVFGAWEPKTGAVS 113

Query: 114 RGLQWLSQK 122
                +  +
Sbjct: 114 SLWDVVRDR 122


>gi|300790762|ref|YP_003771053.1| cytidine and deoxycytidylate deaminase family protein
           [Amycolatopsis mediterranei U32]
 gi|299800276|gb|ADJ50651.1| cytidine and deoxycytidylate deaminase family protein
           [Amycolatopsis mediterranei U32]
          Length = 142

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA-- 63
           M AAL  +R           +  ++   DG+ +     A         HAE+ AL  A  
Sbjct: 1   MEAALEAARAPGADV----PIGAVVFGPDGVPLAAARNARIELGDPTAHAEILALRAAAQ 56

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
               G    G T  VTLEPC        CA  ++   I R+V    +P     G     +
Sbjct: 57  VVGDGWRLEGCTLAVTLEPC------TMCAGALVLARIARLVFGAWEPKTGAVGSLWDVV 110

Query: 120 SQK 122
             +
Sbjct: 111 RDR 113


>gi|332528963|ref|ZP_08404930.1| bifunctional deaminase-reductase-like protein [Hylemonella gracilis
           ATCC 19624]
 gi|332041624|gb|EGI77983.1| bifunctional deaminase-reductase-like protein [Hylemonella gracilis
           ATCC 19624]
          Length = 178

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV-DSIILYRSQIVIGEGGIPSPLEEGY 333
            + ++  L   GV  + ++GG  +  SF+   LV D +I     +++G G    PL  G 
Sbjct: 97  PQAVMEELARSGVRRVYLDGG-LLLQSFLREGLVADMVITTV-PVLLGSGR---PLFGGL 151

Query: 334 LEK-NFMCVRRDYF 346
               +   V    F
Sbjct: 152 TSDIDLTLVSSRSF 165


>gi|297191556|ref|ZP_06908954.1| deaminase [Streptomyces pristinaespiralis ATCC 25486]
 gi|197719293|gb|EDY63201.1| deaminase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 167

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 19/102 (18%)

Query: 2   PVSSFDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCP 53
            +   +  +M  A+  +        G          LIVKDG ++  G            
Sbjct: 9   SIQELERTWMEEAIGLATASVENGGG------PFGALIVKDGEIVAIGNNKVTSNLDPTA 62

Query: 54  HAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQ 90
           H EV A+    ++       G     + EPC     S   A+
Sbjct: 63  HGEVSAIRAGCQKLGTFSLEGCVLVTSCEPCPMCLSSALWAR 104


>gi|116669003|ref|YP_829936.1| deaminase-reductase domain-containing protein [Arthrobacter sp.
           FB24]
 gi|116609112|gb|ABK01836.1| bifunctional deaminase-reductase domain protein [Arthrobacter sp.
           FB24]
          Length = 190

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           GA +A +F+   L+D   +Y   +V+G+G      E   +  N   +    FG+ V L
Sbjct: 125 GANLAATFMRLGLIDEYRIYVHPVVLGQGNGRPLFESPDVRLNLKLLGTHTFGNGVAL 182


>gi|271967123|ref|YP_003341319.1| deaminase-reductase domain-containing protein [Streptosporangium
           roseum DSM 43021]
 gi|270510298|gb|ACZ88576.1| deaminase-reductase domain-containing protein [Streptosporangium
           roseum DSM 43021]
          Length = 187

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 4/64 (6%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCL 352
           GGA +A     + LVD   L+    V+G G    P        +   +    FG+  V L
Sbjct: 124 GGANLASQAFKAGLVDECQLFVWPTVLGGGK---PALPTDARADLELIDERRFGNGVVLL 180

Query: 353 EYIG 356
            Y  
Sbjct: 181 RYRP 184


>gi|118593750|ref|ZP_01551119.1| hypothetical protein SIAM614_03553 [Stappia aggregata IAM 12614]
 gi|118433660|gb|EAV40323.1| hypothetical protein SIAM614_03553 [Stappia aggregata IAM 12614]
          Length = 189

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 46/127 (36%), Gaps = 19/127 (14%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVI---GRGVTAYGG--CPHA 55
             +  D   +  A   +R     T  +P   CL+   DG V+   G G +A G     HA
Sbjct: 29  TQNDKDIALLRRAFEIARQAR-ETGDHP-FGCLLAGPDGDVLMEQGNGYSAEGQDMTAHA 86

Query: 56  EVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E      A +        G T Y + EPC+       C+  +   GI RVV    +  ++
Sbjct: 87  ERLLATRASKRWRPDFLAGCTLYTSAEPCAM------CSGAVYWAGIGRVVFGQTEKSLK 140

Query: 111 VSGRGLQ 117
                 +
Sbjct: 141 EQTGDHE 147


>gi|239942148|ref|ZP_04694085.1| hypothetical protein SrosN15_14197 [Streptomyces roseosporus NRRL
           15998]
 gi|239988611|ref|ZP_04709275.1| hypothetical protein SrosN1_14979 [Streptomyces roseosporus NRRL
           11379]
          Length = 188

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           GGA +  SF  + L+D   +Y   +++G  G P    +    +    +    FG+ V +
Sbjct: 124 GGADLLESFRRADLIDEYRVYVHPLILGR-GRP-FFRDAEERQRLRLLETRTFGNGVVM 180


>gi|323347994|gb|EGA82253.1| Tad2p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 244

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 65/196 (33%), Gaps = 36/196 (18%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLI--VKDGIVIGRGVTAYG----GCPHAEVQALEE-- 62
           M  A+R +R+ +    T   VAC+      G V+  G+        G  HAE   +++  
Sbjct: 1   MRTAVRLARYALDHDET--PVACIFEHTPTGQVMAYGMNDTNKSLTGVAHAEFMGIDQIK 58

Query: 63  AGEEARGA-------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP-------- 107
           A   +RG        T YVT+EPC        CA  + + GI +VV    +         
Sbjct: 59  AMLGSRGVVDVFKDITLYVTVEPCIM------CASALKQLGIGKVVFGCGNERFGGNGTV 112

Query: 108 ---DVRVSGRGLQWLSQKGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163
              +        +  S  G   +  ++  E  + L  +  RQ E+      K     D  
Sbjct: 113 LSVNHDTCTLVPKNNSAAGYESIPGILRKEAIMLLRYFYVRQNERAPKPRSKSDRVLD-K 171

Query: 164 IGMAGCGSVPITGFIS 179
                          +
Sbjct: 172 NTFPPMEWSKYLNEEA 187


>gi|39970877|ref|XP_366829.1| hypothetical protein MGG_02905 [Magnaporthe oryzae 70-15]
 gi|149210385|ref|XP_001522567.1| hypothetical protein MGCH7_ch7g670 [Magnaporthe oryzae 70-15]
 gi|86196625|gb|EAQ71263.1| hypothetical protein MGCH7_ch7g670 [Magnaporthe oryzae 70-15]
 gi|145017270|gb|EDK01633.1| hypothetical protein MGG_02905 [Magnaporthe oryzae 70-15]
          Length = 593

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 6/55 (10%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
           F+  AL  +R  +  T+  P V C++V  G VI RG+ A      G  HAE  AL
Sbjct: 212 FIEEALDMARLAL-KTNETP-VGCVLVYRGRVIARGMNATNITRNGTRHAEYMAL 264


>gi|256396528|ref|YP_003118092.1| bifunctional deaminase-reductase domain-containing protein
           [Catenulispora acidiphila DSM 44928]
 gi|256362754|gb|ACU76251.1| bifunctional deaminase-reductase domain protein [Catenulispora
           acidiphila DSM 44928]
          Length = 178

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 4/84 (4%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           D    +  L  +G   L+V G   +  S + + LVD + +  + +V+G G   +PL    
Sbjct: 96  DPVAAVRELKTQGDGDLMVYGYGRLGQSLLENGLVDELHVVVNPVVLGTG---TPLFRQG 152

Query: 334 LEKNFMCVRRDYFGSDVC-LEYIG 356
              N         G+ V  L Y+ 
Sbjct: 153 KRVNLRLESVSQRGNGVATLVYVP 176


>gi|229028448|ref|ZP_04184570.1| Enzyme [Bacillus cereus AH1271]
 gi|228732897|gb|EEL83757.1| Enzyme [Bacillus cereus AH1271]
          Length = 179

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D+ +    L  +  + + + GG ++   F  + L+D  I+  +  ++G  G+P   ++
Sbjct: 96  NEDVVEFTKRLKAQEGSKIWMVGGGSLLSEFFKNNLIDEYIVTITPHILGS-GVP-LFQD 153

Query: 332 GYLEKNFMCVRRDYFGSDVCLEY 354
              E N        FG  V L Y
Sbjct: 154 KNPEINLTLTDTKRFGQFVNLYY 176


>gi|237651485|ref|YP_002898956.1| putative deoxycytidylate deaminase [Roseophage EE36P1]
 gi|220898117|gb|ACL81374.1| hypothetical protein [Sulfitobacter phage EE36phi1]
          Length = 142

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 46/142 (32%), Gaps = 28/142 (19%)

Query: 10  FMSAALRFSRW-HVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP-------------- 53
           F   AL  +          +  V  +I++ D  +   G   +                  
Sbjct: 5   FDQWALGLAEAVSKRSRDPSTKVGAVIIRPDKTIASMGYNGFPRTMEDKEEWWSDRPQKY 64

Query: 54  ----HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
               H E+ AL  A E     T Y T  PC  +     CA+ II  GI RVV    +   
Sbjct: 65  SRVIHGEMNALLNAKEPVLAMTLYCT-HPCCEH-----CAKHIIAAGISRVVFGTSEEIR 118

Query: 110 RVSG--RGLQWLSQKGIIVDRM 129
           +     + L+     G+ V  +
Sbjct: 119 QRFDIAKSLELFEDCGVEVIEL 140


>gi|118468256|ref|YP_888948.1| cytosine deaminase [Mycobacterium smegmatis str. MC2 155]
 gi|118169543|gb|ABK70439.1| cytosine deaminase [Mycobacterium smegmatis str. MC2 155]
          Length = 146

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 56/148 (37%), Gaps = 17/148 (11%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEA 63
            + +  A+  +R  +      P  A L   DG ++G G       G P  HAE  A   A
Sbjct: 4   EQMLDVAVEEARKGL-SEGGIPIGAALFSADGELLGSGHNRRVQDGDPSIHAETDAFRAA 62

Query: 64  GEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           G +   R      TL PC +      C+  + +  I  +V+     + R    G +WL+ 
Sbjct: 63  GRQRGYRKTIMVTTLSPCWY------CSGLVRQFNIGALVIG----EARTFSGGHEWLAD 112

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            G+ V  + +      +  ++T   +  
Sbjct: 113 NGVSVTLLDDERCVTMMQDFITANPDLW 140


>gi|305676349|ref|YP_003868021.1| putative oxidoreductase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|305414593|gb|ADM39712.1| putative oxidoreductase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 174

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 5/99 (5%)

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
           +++ +++  I    +     L +   +G+  + + GGA + ++F+    +D  I+    +
Sbjct: 81  SYQDEHVTFINEGAKAFTDRLKL--DKGLN-IWIAGGAELVNAFMKEDAIDEFIITVIPV 137

Query: 319 VIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           V+G  GIP    E   E          FG  V L Y+  
Sbjct: 138 VLGS-GIP-LFHELTNETKLRLKGMKQFGQAVQLYYVRP 174


>gi|296331362|ref|ZP_06873834.1| putative oxidoreductase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|296151477|gb|EFG92354.1| putative oxidoreductase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
          Length = 174

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 5/99 (5%)

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
           +++ +++  I    +     L +   +G+  + + GGA + ++F+    +D  I+    +
Sbjct: 81  SYQDEHVTFINEGAKAFTDRLKL--DKGLN-IWIAGGAELVNAFMKEDAIDEFIITVIPV 137

Query: 319 VIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           V+G  GIP    E   E          FG  V L Y+  
Sbjct: 138 VLGS-GIP-LFHELTNETKLRLKGMKQFGQAVQLYYVRP 174


>gi|310819974|ref|YP_003952332.1| cytidine and deoxycytidylate deaminase zinc-binding
           domain-containing protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393046|gb|ADO70505.1| Cytidine and deoxycytidylate deaminase zinc-binding domain protein
           [Stigmatella aurantiaca DW4/3-1]
          Length = 154

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 49/152 (32%), Gaps = 22/152 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE- 65
           D  FM      +            V  + V  G VIG G        H    A   A + 
Sbjct: 3   DEAFMQQ--ALALAREAEALGEVPVGAVAVHQGQVIGTGFNRREIDRHPFAHAELLALDA 60

Query: 66  --------EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
                      G T YVTLEPC+       CA  +++  + R+V    DP    +G    
Sbjct: 61  AARSLGVWRLTGVTLYVTLEPCAM------CAGAMVQGRVTRLVFGTLDPKAGAAGSLYN 114

Query: 118 W-----LSQKGIIVDRMMESEGKIFLHAYLTR 144
                  + +  +   ++  E +  L  +  R
Sbjct: 115 LVEEPRHNHRLQVTSGILADESRQLLKGFFER 146


>gi|117621221|ref|YP_855385.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117562628|gb|ABK39576.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 178

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 66/201 (32%), Gaps = 42/201 (20%)

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGF--ISKNQVHLLRAQSDAILVGIGTVLADDP 205
           +R  ++  +A+S D  I   G     +  +   S+ +         A++  + T+L    
Sbjct: 6   RRPRVSAFLALSLDGFIAGEGGDLAWLEPYNGDSQEET-----GYSALMASVDTLLM--- 57

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
                       +         +   L            V++      P   ++FR+   
Sbjct: 58  ----------GRN--------SYDTVLGFPEWFYGDKPVVVLTHRPAAPREHVSFRQGA- 98

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
                    L ++L  L   G   L ++GG  V    + + LVD +IL+   + +G G  
Sbjct: 99  ---------LAQVLDELWQAGSRHLYLDGG-EVVRQGLQAALVDELILFWVPVTLGGG-- 146

Query: 326 PSPLEEGYLEKNFMCVRRDYF 346
             PL  G L    + V     
Sbjct: 147 -VPLFAGPLPGALVPVSSTVL 166


>gi|317509323|ref|ZP_07966943.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Segniliparus rugosus ATCC BAA-974]
 gi|316252379|gb|EFV11829.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Segniliparus rugosus ATCC BAA-974]
          Length = 148

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 55/149 (36%), Gaps = 17/149 (11%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
              ++ A+  +R  +      P  A L  +DG ++GRG            HAE  A   A
Sbjct: 4   REMLATAVAEARAGLAEGGV-PIGAALFTRDGKLLGRGHNRRVQWDDPAIHAETDAFRAA 62

Query: 64  G--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           G   + R      TL PC +      C+  + +  I  V++     +      G  WL++
Sbjct: 63  GRQRDYRDTVMVTTLSPCWY------CSGLVRQFNIGAVIIG----EASNFHGGHDWLAE 112

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
            G+ V  + + +    L +++        
Sbjct: 113 LGVEVAVLDDPDCTAMLGSFIEANPALWH 141


>gi|271970484|ref|YP_003344680.1| CMP/dCMP deaminase zinc-binding protein [Streptosporangium roseum
           DSM 43021]
 gi|270513659|gb|ACZ91937.1| CMP/dCMP deaminase zinc-binding protein [Streptosporangium roseum
           DSM 43021]
          Length = 154

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 22/136 (16%)

Query: 30  SVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
            V  +++  DG V+ R             HAEV AL EA          G T  VTLEPC
Sbjct: 25  PVGAVVLGPDGSVLARAGNDRESLNDPTAHAEVLALREAARARGEWRLTGCTLVVTLEPC 84

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK------GIIVDRMMESE 133
                   CA   +   + R+V    D     +G     +  +       +++  + E  
Sbjct: 85  ------TMCAGASVLARVDRIVYGATDAKGGAAGSLWDVVRDRRLNHRPEVVMGVLAEEC 138

Query: 134 GKIFLHAYLTRQVEKR 149
             +    +  R++ ++
Sbjct: 139 AGVLTEFFTVRRMREQ 154


>gi|119493586|ref|ZP_01624250.1| Deoxycytidylate deaminase [Lyngbya sp. PCC 8106]
 gi|119452576|gb|EAW33759.1| Deoxycytidylate deaminase [Lyngbya sp. PCC 8106]
          Length = 181

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 43/128 (33%), Gaps = 39/128 (30%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCPHAEVQ----- 58
           S+D  F+  A + +      T     V  +IVKD  V+  G      G  H   Q     
Sbjct: 13  SWDEYFLMLA-KLA--ATRSTCLAFPVGAVIVKDRQVVATGYNGSPSGSVHCTTQGYCYP 69

Query: 59  --------------ALE----------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                         A+           + G    G++ YVTLEPC        C + +I 
Sbjct: 70  GLSSCDASSSLPSRAVHAEANAIAQAAKHGISCGGSSIYVTLEPC------VSCLKLVIS 123

Query: 95  CGIRRVVV 102
            GI+ V  
Sbjct: 124 AGIKEVYY 131


>gi|302869363|ref|YP_003838000.1| CMP/dCMP deaminase [Micromonospora aurantiaca ATCC 27029]
 gi|302572222|gb|ADL48424.1| CMP/dCMP deaminase zinc-binding [Micromonospora aurantiaca ATCC
           27029]
          Length = 141

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 37/114 (32%), Gaps = 24/114 (21%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNP----SVAC----LIVKDGIVIGRGVTAYGGCPH 54
           ++  D  F+  A+  +    G +   P     V      LI     V+           H
Sbjct: 1   MTPDDEAFLRRAVELADRA-GASGERPFASLLVGADGTVLIEDHNTVVS----DKDVTAH 55

Query: 55  AE----VQALEE-AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
            E      A  + A E A   T + + +PC      P C   I   G+ RVV  
Sbjct: 56  PELKLARWAARQLAPEAAVATTMFTSCQPC------PMCTVAINASGLGRVVYA 103


>gi|299821813|ref|ZP_07053701.1| riboflavin biosynthesis protein RibD domain protein [Listeria grayi
           DSM 20601]
 gi|299817478|gb|EFI84714.1| riboflavin biosynthesis protein RibD domain protein [Listeria grayi
           DSM 20601]
          Length = 175

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           + + GGA +   F+  +++D  ++  + I++G+G    PL +              FG  
Sbjct: 107 IWLVGGADLIKQFLKEKVIDEYVITVAPILLGKG---IPLFDVASSIGLTLKAVSQFGQF 163

Query: 350 VCLEY 354
             L Y
Sbjct: 164 AQLTY 168


>gi|307265640|ref|ZP_07547193.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919284|gb|EFN49505.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 147

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 39/108 (36%), Gaps = 36/108 (33%)

Query: 31  VACLIVKDGIVIGRGVTAYGG---------------------------CPHAEVQALEEA 63
           V  ++V D  +I  G                                   HAE  A+ +A
Sbjct: 27  VGAILVVDKHIISTGYNGPPTGLAHCEDTGCLREQLGIPSGERPELCRGVHAEQNAIIQA 86

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
              G   +GAT YV+  PC        CA+ +I  G++R+V   + PD
Sbjct: 87  ALHGVSTKGATLYVSASPCVI------CAKMLINAGVKRIVYEEEYPD 128


>gi|261406813|ref|YP_003243054.1| bifunctional deaminase-reductase domain-containing protein
           [Paenibacillus sp. Y412MC10]
 gi|261283276|gb|ACX65247.1| bifunctional deaminase-reductase domain protein [Paenibacillus sp.
           Y412MC10]
          Length = 176

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 10/86 (11%)

Query: 274 DLKKLLTILVGR--GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           DL   +  L  +  GV  +    G  +AHS     LVD   LY   +V+G G    P   
Sbjct: 97  DLAAAIRELKAQHEGVIEV---AGPELAHSLTELGLVDEYRLYLHPVVLGHGK---PFFA 150

Query: 332 GYLEKNFMCVRRDYFGSDVC-LEYIG 356
           G        V  D  G +V  L Y+ 
Sbjct: 151 G-PRPPLRLVASDRIGENVIRLTYVP 175


>gi|126659653|ref|ZP_01730783.1| hypothetical protein CY0110_25426 [Cyanothece sp. CCY0110]
 gi|126619099|gb|EAZ89838.1| hypothetical protein CY0110_25426 [Cyanothece sp. CCY0110]
          Length = 186

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 43/128 (33%), Gaps = 39/128 (30%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCPHAEVQ----- 58
           ++D  F+  A + +      T     V  +IVKD  V+  G      G  H   Q     
Sbjct: 10  TWDEYFIMIA-KLA--ATRSTCLAFPVGAVIVKDKQVLATGYNGSPSGSAHCTAQGFCYP 66

Query: 59  --------------ALE----------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                         A+           + G    GA+ YVTLEPC        C + II 
Sbjct: 67  GLDSCDTSSSLPSRAVHAEANAIAQAAKHGISTHGASIYVTLEPC------VSCLKLIIS 120

Query: 95  CGIRRVVV 102
            GI+ V  
Sbjct: 121 AGIKEVFY 128


>gi|323699085|ref|ZP_08110997.1| CMP/dCMP deaminase, zinc-binding [Desulfovibrio sp. ND132]
 gi|323459017|gb|EGB14882.1| CMP/dCMP deaminase, zinc-binding [Desulfovibrio desulfuricans
           ND132]
          Length = 152

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 47/150 (31%), Gaps = 43/150 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
            +   FM  A   ++     T T  +V  + V+D  ++  G                   
Sbjct: 6   PWPEYFMRIAHLVAQRS---TCTRRAVGAIAVRDKRILATGYNGVPTNIAHCDVVGCLRD 62

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE   + +A     + +G   Y T +PC        C + +I 
Sbjct: 63  QLGIPSGERHELCRGLHAEQNVIIQAATNNLDLKGCDIYCTTKPCI------LCTKMLIN 116

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           CG++ +    + PD          L + G+
Sbjct: 117 CGVQNIYYSENYPDELSE----AMLQEAGV 142


>gi|281501005|pdb|3KY8|A Chain A, Crystal Structure Of Putative Riboflavin Biosynthesis
           Protein (Yp_001092907.1) From Shewanella Sp. Pv-4 At
           2.12 A Resolution
 gi|281501006|pdb|3KY8|B Chain B, Crystal Structure Of Putative Riboflavin Biosynthesis
           Protein (Yp_001092907.1) From Shewanella Sp. Pv-4 At
           2.12 A Resolution
          Length = 197

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
           L  ++  L  +G   L ++GG     +F+   L+D  ++ R  I++G GG+P    E   
Sbjct: 115 LVDIIADLNAKGFNELYIDGGVT-IQNFLKEDLIDEXVITRFPILLG-GGVP-LFGELES 171

Query: 335 EKNFMCVRRDYFGS 348
             +F  ++ +    
Sbjct: 172 SLSFNVIKSEVVLD 185


>gi|255724014|ref|XP_002546936.1| hypothetical protein CTRG_01242 [Candida tropicalis MYA-3404]
 gi|240134827|gb|EER34381.1| hypothetical protein CTRG_01242 [Candida tropicalis MYA-3404]
          Length = 279

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 18/123 (14%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGV----TAYGGCPHAEVQALE- 61
           ++M+ +L      +    T   V+C++V  K   +I  G      +  G  HAE  AL+ 
Sbjct: 10  KYMAISLFVGYKALLNNET--PVSCIVVNSKTDEIISIGYNYTNHSLNGTQHAEFIALQR 67

Query: 62  -EAGEEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            E+ E         YVT+EPC        CA ++ + GI +V+    +     +G  L  
Sbjct: 68  FESDESINYSDLILYVTVEPCIM------CASYLRQLGIGKVIFGCGNDRFGGNGTVLPV 121

Query: 119 LSQ 121
              
Sbjct: 122 HKD 124


>gi|228919503|ref|ZP_04082867.1| Enzyme [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228840146|gb|EEM85423.1| Enzyme [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 173

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             +     D+ +    L  +  + + + GG  +   F  + L+D  I+  +  ++G  G+
Sbjct: 84  EHVEFVNEDVVEFTKRLKEQEGSKIWMVGGGGLLREFFKNNLIDEYIVTITPHILGS-GV 142

Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           P   ++   E N        FG  V L Y
Sbjct: 143 P-LFQDKNPEINLTLTDTKRFGQFVNLYY 170


>gi|24667298|ref|NP_649197.1| CG6951, isoform A [Drosophila melanogaster]
 gi|24667302|ref|NP_730502.1| CG6951, isoform B [Drosophila melanogaster]
 gi|9296958|sp|Q9VWA2|DCTD_DROME RecName: Full=Probable deoxycytidylate deaminase; AltName:
           Full=dCMP deaminase
 gi|7293676|gb|AAF49046.1| CG6951, isoform A [Drosophila melanogaster]
 gi|23093067|gb|AAN11625.1| CG6951, isoform B [Drosophila melanogaster]
 gi|41058187|gb|AAR99137.1| RE06943p [Drosophila melanogaster]
 gi|220950846|gb|ACL87966.1| CG6951-PA [synthetic construct]
 gi|220959594|gb|ACL92340.1| CG6951-PA [synthetic construct]
          Length = 203

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 48/155 (30%), Gaps = 40/155 (25%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT---------------AY 49
           +D  FM+ +L  ++           V   IV     ++  G                 A 
Sbjct: 28  WDDYFMATSLLSAKRSK---DPVTQVGACIVDSQNRIVAIGYNGFPRNCSDDVFPWSKAK 84

Query: 50  GGC-------------PHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
            G               HAE  A L   G    G   Y TL PC+       CA+ II+ 
Sbjct: 85  KGSQEFDPLEDKKMYVVHAEANAILNSNGMSLSGTRLYTTLFPCNE------CAKLIIQV 138

Query: 96  GIRRVVVCVDDP-DVRVSGRGLQWLSQKGIIVDRM 129
           GI +V+   D   D        + L   G+   R 
Sbjct: 139 GISQVLYLSDKYADKPTYRASKRMLDAVGVEYKRH 173


>gi|325479743|gb|EGC82833.1| putative ComE operon protein 2 [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 146

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 35/145 (24%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV---------------TAYGG 51
             FM  A   +      T     V C+IV  +  ++  G                T   G
Sbjct: 10  EYFMKLAKNVAMRG---TCDRAYVGCVIVNEENRIVTTGYNGSISGNPHCDEVGHTMRDG 66

Query: 52  ----CPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                 HAE+ A+    + G   +    YVT  PC +      C + +I+ GI+++    
Sbjct: 67  HCIATIHAEMNAILYCAKEGIALKDTICYVTHFPCLN------CTKSLIQAGIKKIYY-- 118

Query: 105 DDPDVRVSGRGLQWLSQKGIIVDRM 129
            +   R+    ++ L +  I  +++
Sbjct: 119 -NEAYRMDDYAVELLEKNNIAYEQV 142


>gi|229171429|ref|ZP_04299014.1| Enzyme [Bacillus cereus MM3]
 gi|228612133|gb|EEK69370.1| Enzyme [Bacillus cereus MM3]
          Length = 180

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D+ + +  L  +  + + + GG ++   F  + L+D  ++  +  ++G  G+P   ++
Sbjct: 96  NEDVVEFIKRLKAQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVP-LFQD 153

Query: 332 GYLEKNFMCVRRDYFGSDVCLEY 354
              E N        FG  V L Y
Sbjct: 154 KNPEINLTLTDTKRFGQFVNLYY 176


>gi|113968486|ref|YP_732279.1| CMP/dCMP deaminase, zinc-binding [Shewanella sp. MR-4]
 gi|113883170|gb|ABI37222.1| CMP/dCMP deaminase, zinc-binding [Shewanella sp. MR-4]
          Length = 157

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 44/120 (36%), Gaps = 24/120 (20%)

Query: 15  LRFSRW---HVGLTSTNPSVACLIVKD-GIVIGRGVTAYGG----CPHAEVQALEEAG-- 64
           L  ++      GL       + +IV + G ++  GV           HAE+QA+ +A   
Sbjct: 13  LALAQKEVEGTGL-----PFSAVIVDESGRIVAEGVNRVQALHDCTAHAEIQAIRKATLL 67

Query: 65  ---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                  G T   + EPC        C   I    I RV+V VD  +    G   +W  Q
Sbjct: 68  LKQVSLEGMTLIASGEPCGF------CYMAIQLAKISRVIVLVDRHEACQYGFDYRWTYQ 121


>gi|322710269|gb|EFZ01844.1| putative dCMP deaminase [Metarhizium anisopliae ARSEF 23]
          Length = 381

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 48/149 (32%), Gaps = 42/149 (28%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG---------GCP-- 53
           +D  FM+ A   +            V C++V ++  VI  G              GCP  
Sbjct: 224 WDTYFMALA-SLAAQRSNCMKR--RVGCVLVGRERRVISTGYNGTPRGIRNCADGGCPRC 280

Query: 54  ----------------HAEVQALEEAG-EEAR-GATAYVTLEPCSHYGRSPPCAQFIIEC 95
                           HAE  AL EAG E  R G+  Y    PC        C+  I + 
Sbjct: 281 NEGNSSGVGLATCLCIHAEENALLEAGRERIRDGSVLYCDTCPCL------TCSIKICQV 334

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           GI  VV         +        SQ G+
Sbjct: 335 GIGEVVYAHGYS---MDKEAAAVFSQAGV 360


>gi|313836183|gb|EFS73897.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL037PA2]
 gi|314927620|gb|EFS91451.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL044PA1]
 gi|314971383|gb|EFT15481.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL037PA3]
 gi|328906319|gb|EGG26094.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium sp. P08]
          Length = 152

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 43/137 (31%), Gaps = 45/137 (32%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP------- 53
            V  +D  F+  A   S            V  L+V +  +I  G      G P       
Sbjct: 10  TVPDWDEYFLGIAEAVSARAKCTRR---RVGALLVHEHRIIATGYNGAAPGRPDCLEGAC 66

Query: 54  ----------------------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRS 85
                                       HAEV AL  A  +  G+TAYVT +PCS     
Sbjct: 67  PRGQLGYGEVPAFSDYDVPGSPGFCIAIHAEVNALLFATRDTAGSTAYVTDKPCSG---- 122

Query: 86  PPCAQFIIECGIRRVVV 102
             C + +   G+ R V 
Sbjct: 123 --CRKALAAAGVVRAVW 137


>gi|306831164|ref|ZP_07464325.1| riboflavin biosynthesis protein RibD domain protein [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304426730|gb|EFM29841.1| riboflavin biosynthesis protein RibD domain protein [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 226

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 57/148 (38%), Gaps = 17/148 (11%)

Query: 222 IILDPHFKLSLDSKIIKTAL---LAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLK 276
           II+D    L     + +         +II +E            K+I+ I C  +  +L 
Sbjct: 85  IIVDTKGTL-----LWRDDSSYEKPHLIITSEAVSTDYLDYLDSKHISWIACGKEKINLA 139

Query: 277 KLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
           + + IL     V+ L V GG  +   F+ + L+D I L     + G  G+ S  +   +E
Sbjct: 140 RAMEILTEEFAVSRLAVVGGGHINEGFLQAGLLDEISLLIGLGIDGREGMASVFDGFSME 199

Query: 336 KN-----FMCVRRDYFGSDVCLEYIGKN 358
                     V+    G+ + L Y  +N
Sbjct: 200 TEPTAVTLKEVKTYPDGA-IWLRYTPEN 226


>gi|88798973|ref|ZP_01114554.1| putative deoxycytidylate deaminase [Reinekea sp. MED297]
 gi|88778200|gb|EAR09394.1| putative deoxycytidylate deaminase [Reinekea sp. MED297]
          Length = 149

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 39/125 (31%), Gaps = 28/125 (22%)

Query: 31  VACLIVKDGIVIGRGVTAYGG-----------------CPHAEVQALEEAGEEARGATAY 73
           V  +I +   ++  G   Y                     HAE  A+  A         +
Sbjct: 27  VGAVITEQNRIVSLGFNGYPHGISDSAETDDREMKLLKTLHAEENAILFAKRNLDDCDIW 86

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD-----VRVSGRGLQWLSQKGIIVDR 128
           VT  PC      P CA  II+ GI  V       D               L+Q G+ +D 
Sbjct: 87  VTHFPC------PNCAAKIIQTGISTVHCPEQSEDFLSRWGEKIKISEDMLAQAGVTIDW 140

Query: 129 MMESE 133
           +  ++
Sbjct: 141 LPLAD 145


>gi|227496672|ref|ZP_03926948.1| cytosine deaminase [Actinomyces urogenitalis DSM 15434]
 gi|226833820|gb|EEH66203.1| cytosine deaminase [Actinomyces urogenitalis DSM 15434]
          Length = 154

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 49/130 (37%), Gaps = 21/130 (16%)

Query: 30  SVACLIVK-DGIVIGRGV----TAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
            V  +++   G VI        T +    HAEV+AL  AG         G T  VTLEPC
Sbjct: 29  PVGAVVLDPGGRVIAEAANARETEHDPTAHAEVRALRAAGARLADSHLDGCTLVVTLEPC 88

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS-----QKGIIVDRMMESEG 134
                   CA  I    ++RVV+   +P     G     L       +  +V  +  SE 
Sbjct: 89  ------TMCAGAIQLARLQRVVLGAWEPKTGACGSVRDVLRDPRANHQVEVVAGVGASES 142

Query: 135 KIFLHAYLTR 144
           +  L  +  R
Sbjct: 143 EALLREFFAR 152


>gi|23098113|ref|NP_691579.1| hypothetical protein OB0658 [Oceanobacillus iheyensis HTE831]
 gi|22776338|dbj|BAC12614.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 158

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 23/138 (16%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP---HAEV- 57
           ++  D +++   +  ++  +  T   P    ++V  +G V+        G     H E  
Sbjct: 2   INDSDLKYLRRCIELAKAAL-ETGDEP-FGSVLVSANGDVLAEDYNHVSGGDHTQHPEFA 59

Query: 58  ---QALEEAGEEARG-ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
               A      E RG AT Y + E C      P CA      G+ R+V          S 
Sbjct: 60  LAKWAAGNMTSEERGKATVYTSGEHC------PMCAAAHGWVGLGRIVYAS------SSE 107

Query: 114 RGLQWLSQKGIIVDRMME 131
           + +QWL++ G+   R+  
Sbjct: 108 QLVQWLNEIGVTESRVRN 125


>gi|300172771|ref|YP_003771936.1| reductase [Leuconostoc gasicomitatum LMG 18811]
 gi|299887149|emb|CBL91117.1| Reductase (Putative) [Leuconostoc gasicomitatum LMG 18811]
          Length = 177

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
             + V GG ++    + + +VD   +    +++G+G      E G        +     G
Sbjct: 106 NDIWVVGGGSILKPLLEANMVDEFWIQIVPVLLGQG--KRLFEPGRYRYRLQVIETTQLG 163

Query: 348 S 348
            
Sbjct: 164 E 164


>gi|256851965|ref|ZP_05557352.1| ComE operon protein 2 [Lactobacillus jensenii 27-2-CHN]
 gi|260661465|ref|ZP_05862378.1| ComE operon protein 2 [Lactobacillus jensenii 115-3-CHN]
 gi|282931728|ref|ZP_06337216.1| ComE operon protein 2 [Lactobacillus jensenii 208-1]
 gi|297205164|ref|ZP_06922560.1| competence protein ComEB [Lactobacillus jensenii JV-V16]
 gi|256615377|gb|EEU20567.1| ComE operon protein 2 [Lactobacillus jensenii 27-2-CHN]
 gi|260547920|gb|EEX23897.1| ComE operon protein 2 [Lactobacillus jensenii 115-3-CHN]
 gi|281304171|gb|EFA96285.1| ComE operon protein 2 [Lactobacillus jensenii 208-1]
 gi|297149742|gb|EFH30039.1| competence protein ComEB [Lactobacillus jensenii JV-V16]
          Length = 160

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 34/153 (22%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------TAYGGCP 53
             FM  AL  S+      +    V  ++VKD  +IG G                      
Sbjct: 10  QYFMMQALVISQRSTCNRA---LVGSVLVKDKRIIGTGYNGSVTGQEHCDDVGHQMVDGH 66

Query: 54  -----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                H+E+  L +    G        YVT  PC +      C + +I+ GI++V    D
Sbjct: 67  CIRTIHSEMNTLIQCAKNGVSTLDTEIYVTHFPCYN------CTKALIQAGIKKVNYFFD 120

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138
             D  ++   ++ L + G+ V+++         
Sbjct: 121 YHDNPLA---VELLKKTGVEVNQIKLDSSYAQN 150


>gi|90413417|ref|ZP_01221409.1| putative dihydrofolate reductase [Photobacterium profundum 3TCK]
 gi|90325505|gb|EAS41982.1| putative dihydrofolate reductase [Photobacterium profundum 3TCK]
          Length = 177

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL-EEGY 333
           L  ++  L  +G  +L ++GG     +F+   L+D +I+    +++G G   SPL  E  
Sbjct: 96  LATVVASLNEQGYNNLYIDGG-ITIQNFLKEELIDEMIITTIPVLLGGG---SPLFGELV 151

Query: 334 LEKNFMCVRRDYF 346
             ++F     +  
Sbjct: 152 TPQSFELTSSETL 164


>gi|226324154|ref|ZP_03799672.1| hypothetical protein COPCOM_01932 [Coprococcus comes ATCC 27758]
 gi|225207703|gb|EEG90057.1| hypothetical protein COPCOM_01932 [Coprococcus comes ATCC 27758]
          Length = 153

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 11/99 (11%)

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS----- 120
                T YVTLEPC        C+  I++  I RVVV   +P    +G  L  L      
Sbjct: 18  RLEECTLYVTLEPCQM------CSGAIVQARIPRVVVGCMNPKAGCAGSILNLLQVEAFN 71

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
            +  +   ++E E    + ++     +K+     +  +S
Sbjct: 72  HQAELTTGILEEECSQMMKSFFKELRKKQKMKKERTGIS 110


>gi|194367233|ref|YP_002029843.1| CMP/dCMP deaminase zinc-binding [Stenotrophomonas maltophilia
           R551-3]
 gi|194350037|gb|ACF53160.1| CMP/dCMP deaminase zinc-binding [Stenotrophomonas maltophilia
           R551-3]
          Length = 150

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 19/143 (13%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR 68
           A+  +R   GL      +   +   DG ++G G            H E  A  +AG + R
Sbjct: 14  AIAEAR--QGLAEGGVPIGAALYHNDGRLLGCGHNRRVQESDPSVHGETDAFRKAGRQRR 71

Query: 69  --GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
                   TL PC +      C+  + +  I  VVV     + R    G+ WL + G+ V
Sbjct: 72  YQDTIMVTTLAPCWY------CSGLVRQFNIGTVVVG----ESRTFQGGIDWLRENGVKV 121

Query: 127 DRMMESEGKIFLHAYLTRQVEKR 149
             +   E    L  ++ +  E  
Sbjct: 122 IDLDSQECVDLLGGFIAQHPEIW 144


>gi|15828339|ref|NP_302602.1| cytidine/deoxycytidylate deaminase [Mycobacterium leprae TN]
 gi|221230816|ref|YP_002504232.1| putative cytidine/deoxycytidylate deaminase [Mycobacterium leprae
           Br4923]
 gi|13094032|emb|CAC31991.1| possible cytidine/deoxycytidylate deaminase [Mycobacterium leprae]
 gi|219933923|emb|CAR72573.1| possible cytidine/deoxycytidylate deaminase [Mycobacterium leprae
           Br4923]
          Length = 171

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 55/157 (35%), Gaps = 25/157 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----CPHAEVQA 59
           + D   + AAL  +       S +  +  +++  DG  + R V A         HAE+ A
Sbjct: 15  TTDEDLIRAALTVA---TTAGSRDVPIGAVVLGADGNELARAVNAREAIGDPTAHAEILA 71

Query: 60  LEEA------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           +  A      G    G T  VT+EPC        CA  ++   I R+V     P     G
Sbjct: 72  MRAAAGTLGNGWRLEGTTLAVTVEPC------TMCAGALVLARIERLVFGAWQPKTGAVG 125

Query: 114 RGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQ 145
                +    +     +   ++  E    L A+   Q
Sbjct: 126 SLWDVVRDHRLNHRPAVRGGVLAQECTAPLEAFFAHQ 162


>gi|297568295|ref|YP_003689639.1| CMP/dCMP deaminase zinc-binding protein [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924210|gb|ADH85020.1| CMP/dCMP deaminase zinc-binding protein [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 161

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 43/132 (32%), Gaps = 22/132 (16%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACL-IVKDGIVIG------RGVTAYGGCPH 54
           P +  D   M  AL               V  L I + G ++        G     G  H
Sbjct: 9   PPAPKDTSLMHQALE--AARAAAARGEVPVGALLIDRQGEILAVDGNRTIGDHDPSG--H 64

Query: 55  AEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AE+  L  A          G T YVTLEPC        C   +I+  I R+V   +DP  
Sbjct: 65  AEIVVLRRAAARIGNHRLTGTTLYVTLEPCLM------CVGVMIQARIERLVFGANDPKA 118

Query: 110 RVSGRGLQWLSQ 121
                  +  + 
Sbjct: 119 GAVVSLYRLAAD 130


>gi|254392686|ref|ZP_05007860.1| guanine deaminase [Streptomyces clavuligerus ATCC 27064]
 gi|326439435|ref|ZP_08214169.1| Guanine deaminase [Streptomyces clavuligerus ATCC 27064]
 gi|197706347|gb|EDY52159.1| guanine deaminase [Streptomyces clavuligerus ATCC 27064]
          Length = 187

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 8  ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
           +FM+ A R +   V      P    +I K+  ++ RG            H EV+A+ +A
Sbjct: 5  KKFMAEAARLATESVVNGWGGP-FGAVITKNDEIVARGQNRVLLTGDPTAHGEVEAIRKA 63


>gi|115378509|ref|ZP_01465666.1| tRNA-specific adenosine deaminase [Stigmatella aurantiaca DW4/3-1]
 gi|115364478|gb|EAU63556.1| tRNA-specific adenosine deaminase [Stigmatella aurantiaca DW4/3-1]
          Length = 148

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 45/129 (34%), Gaps = 20/129 (15%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE---------EARGATAYVTLEPCS 80
            V  + V  G VIG G        H    A   A +            G T YVTLEPC+
Sbjct: 18  PVGAVAVHQGQVIGTGFNRREIDRHPFAHAELLALDAAARSLGVWRLTGVTLYVTLEPCA 77

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGK 135
                  CA  +++  + R+V    DP    +G           + +  +   ++  E +
Sbjct: 78  M------CAGAMVQGRVTRLVFGTLDPKAGAAGSLYNLVEEPRHNHRLQVTSGILADESR 131

Query: 136 IFLHAYLTR 144
             L  +  R
Sbjct: 132 QLLKGFFER 140


>gi|320333701|ref|YP_004170412.1| CMP/dCMP deaminase zinc-binding protein [Deinococcus maricopensis
           DSM 21211]
 gi|319754990|gb|ADV66747.1| CMP/dCMP deaminase zinc-binding protein [Deinococcus maricopensis
           DSM 21211]
          Length = 184

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 23/118 (19%)

Query: 6   FDAR-FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY-----------GGC 52
            D R ++   LR +R      S    V  ++V   G +I RG                  
Sbjct: 1   MDHRPYLQETLRLAREAQTQGSA--PVGAVLVNEHGDIIARGRNRVGEAQTPQHVGDASV 58

Query: 53  PHAEVQALEEAGE--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            HAE+    + G+  + +  T Y +LEPC   G     A  ++  G+RR+V   DDP 
Sbjct: 59  AHAEMDLYFQIGKLKDPQHLTLYTSLEPCLMCGG----ASALL--GVRRIVWATDDPW 110


>gi|284033680|ref|YP_003383611.1| bifunctional deaminase-reductase domain-containing protein
           [Kribbella flavida DSM 17836]
 gi|283812973|gb|ADB34812.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
           DSM 17836]
          Length = 183

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 54/173 (31%), Gaps = 31/173 (17%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFI-SKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
           +   + +S D  I   G     +T  +     V  L  +  A+LVG  T   DDP     
Sbjct: 4   MLYSVTMSLDGFIAGPGADMSWLTDHLGPNPVVDDLIGEVGALLVGANTYRGDDPHKNDE 63

Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270
             G                     K        P  +VT +     A       +     
Sbjct: 64  GAG---------------------KAFGGGWEGPQYVVTHHPPAESAP-----GVFFRTD 97

Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
               L         R V  +L   GA +A   + +  +D ++ + + +++G+G
Sbjct: 98  VATALADAEAAAGDRYVN-VL---GADLARQCLEAGRLDEVLTFVAPVLLGDG 146


>gi|228994787|ref|ZP_04154587.1| hypothetical protein bpmyx0001_54510 [Bacillus pseudomycoides DSM
           12442]
 gi|228764955|gb|EEM13709.1| hypothetical protein bpmyx0001_54510 [Bacillus pseudomycoides DSM
           12442]
          Length = 189

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 4/114 (3%)

Query: 239 TALLAPVI-IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
           T     V  +V   +  V +   +  +   I+ +   L+++   L  +    + + GGA+
Sbjct: 70  TKAEKEVWELVHSKEKYVFSRTQKGIDNKAIFINDNILEEV-NKLKKKSGKDIWLYGGAS 128

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           +  +FI+  LVD   L    +++GEG       +     N   V    F S V 
Sbjct: 129 LITTFISLGLVDEFRLSVHPVILGEG--KPLFIDIKQRLNLKMVNTRTFSSGVV 180


>gi|295698536|ref|YP_003603191.1| tRNA-specific adenosine deaminase [Candidatus Riesia pediculicola
           USDA]
 gi|291157478|gb|ADD79923.1| tRNA-specific adenosine deaminase [Candidatus Riesia pediculicola
           USDA]
          Length = 171

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 18/112 (16%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEE 62
           D  +M+ +L  ++    L      +  +++    ++       +       HAE+  + E
Sbjct: 15  DFFWMNKSLDLAKKSEIL--GEIPIGAVLIYQDNIVASSGNEVILRNDPSAHAEIIVIRE 72

Query: 63  AGEEAR------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
             +  +        T YVT+ PC        C   I +  I RVV   ++  
Sbjct: 73  GAKHFKNYRLKENLTIYVTIFPCIM------CMGAIFQSRISRVVYGSENYK 118


>gi|85375364|ref|YP_459426.1| nitrogen fixation protein [Erythrobacter litoralis HTCC2594]
 gi|84788447|gb|ABC64629.1| nitrogen fixation protein [Erythrobacter litoralis HTCC2594]
          Length = 142

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 42/147 (28%), Gaps = 24/147 (16%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG------ 64
           M  AL  +R      +    +  ++VK   VI           H      E A       
Sbjct: 1   MRLALEEARKAA--DAGEVPIGAVVVKGEKVI-VAAHNSPRTDHDPTAHAEIAAIRAAAK 57

Query: 65  ----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ--- 117
               E   G   +VTLEPC+       CA  I    I R+     DP       G +   
Sbjct: 58  ALGQERLEGCDLWVTLEPCAM------CAGAISHARIARLYYAASDPKGGAVEHGAKVFD 111

Query: 118 --WLSQKGIIVDRMMESEGKIFLHAYL 142
                    +   M E E    L  + 
Sbjct: 112 HSQCLHAPEVYSGMGEDEAADMLRGFF 138


>gi|258405542|ref|YP_003198284.1| CMP/dCMP deaminase zinc-binding [Desulfohalobium retbaense DSM
           5692]
 gi|257797769|gb|ACV68706.1| CMP/dCMP deaminase zinc-binding protein [Desulfohalobium retbaense
           DSM 5692]
          Length = 153

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 47/162 (29%), Gaps = 43/162 (26%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------- 46
           P   +   FM  A   +     L      V  + VKD  ++  G                
Sbjct: 3   PRLPWPDYFMRIAHLVAERSTCLRR---RVGAIAVKDNRILATGYNGAPAGLAHCLDIGC 59

Query: 47  ------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQF 91
                              HAE   + +A   G   +GA  + T +PC        C + 
Sbjct: 60  LREKMGIPSGERHELCRGLHAEQNVIIQAAVHGIPLKGAEIFCTTQPCLI------CTKM 113

Query: 92  IIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
           +I   I  +      PD        + L + G++ +R   + 
Sbjct: 114 LINSNITAIYFAEGYPDALAR----EMLEEAGVVYERFTPAA 151


>gi|120405009|ref|YP_954838.1| CMP/dCMP deaminase [Mycobacterium vanbaalenii PYR-1]
 gi|119957827|gb|ABM14832.1| CMP/dCMP deaminase, zinc-binding protein [Mycobacterium vanbaalenii
           PYR-1]
          Length = 164

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 54/151 (35%), Gaps = 17/151 (11%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQAL 60
           +     +  A+  +R  +      P  A L   DG ++G G       G P  HAE  A 
Sbjct: 19  ATPQEMLEVAVEEARKGLAE-GGIPIGAALFSTDGALLGSGHNRRVQLGDPSVHAETDAF 77

Query: 61  EEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
             AG +   R      TL PC +      C+  + +  I  VV+     + R    G  W
Sbjct: 78  RNAGRQRGYRSTIMVTTLSPCWY------CSGLVRQFNIGAVVIG----ESRTFTGGHDW 127

Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           L+  G+ V  + +      +  ++    +  
Sbjct: 128 LADNGVDVTIVDDERCVTMMRDFIAANPDLW 158


>gi|269794773|ref|YP_003314228.1| dihydrofolate reductase [Sanguibacter keddieii DSM 10542]
 gi|269096958|gb|ACZ21394.1| dihydrofolate reductase [Sanguibacter keddieii DSM 10542]
          Length = 184

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 54/171 (31%), Gaps = 30/171 (17%)

Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN 212
            + I  S D  I         +T    +           A++          P +   + 
Sbjct: 8   CVFIGTSLDGYIAKPDGDLSWLTAPEPRGHA-AEEGAHPALV-----WKTFFPTIDTLVM 61

Query: 213 GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC 272
           G   +      +    +   + K +       +++ T  D    A   R           
Sbjct: 62  GRTTYD----TVSGFDEWPFEGKTV-------IVLSTTLDASDRAQVVRS---------- 100

Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
             + +   +L   G   + V+GG     SF+++ LVD I +  + +++G G
Sbjct: 101 --VDEASDLLARTGAERVYVDGG-RTIQSFVSAGLVDEITVSVAPVLLGRG 148


>gi|294885496|ref|XP_002771343.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239874872|gb|EER03159.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 76

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 3  VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
           S  D RFM  AL  ++     T   P V C  V +G+V+               HAE+ 
Sbjct: 15 FSVDDKRFMRLALAAAQEA-YDTDEVP-VGCAFVSNGVVLATAGNETNHTRNATRHAELV 72

Query: 59 A 59
          A
Sbjct: 73 A 73


>gi|241207248|ref|YP_002978344.1| bifunctional deaminase-reductase domain protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240861138|gb|ACS58805.1| bifunctional deaminase-reductase domain protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 176

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 46/134 (34%), Gaps = 16/134 (11%)

Query: 225 DPHFKLSLDSKIIKTALLA-PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV 283
           D H +   + +   TA  + P  +V+ +   V   A              DL+  +  L 
Sbjct: 56  DEHPEWDAERQAFATAWRSQPKWVVSRSLASVGPKATLV---------GEDLEAAIRELK 106

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
                 + V  G  +A S     L+D   +Y   +V+G G    P   G        +  
Sbjct: 107 AERDGEIEV-AGPNLAQSLTELGLIDEYRIYLHPVVLGHGK---PYFAG-PRPPLHLMAH 161

Query: 344 DYFGSDVC-LEYIG 356
           D  G DV  L Y+ 
Sbjct: 162 DRIGEDVIRLTYVP 175


>gi|229010080|ref|ZP_04167294.1| Enzyme [Bacillus mycoides DSM 2048]
 gi|228751213|gb|EEM01025.1| Enzyme [Bacillus mycoides DSM 2048]
          Length = 174

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 2/93 (2%)

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             +     D+ +    L  +  + + + GG ++   F  + L+D  ++  +  ++G  G+
Sbjct: 84  EHVEFVNEDVLEFTKRLKEQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GV 142

Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           P   +E   E N        FG  V L Y  K+
Sbjct: 143 P-LFKEKNPEINLTLTDTKRFGQFVNLYYKVKS 174


>gi|183982856|ref|YP_001851147.1| hypothetical protein MMAR_2852 [Mycobacterium marinum M]
 gi|183176182|gb|ACC41292.1| conserved hypothetical protein [Mycobacterium marinum M]
          Length = 186

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 7/86 (8%)

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
              P  + T  + PV          ++ +     L  L TI    G   + V GG  +A 
Sbjct: 75  GDKPTFVFTTRELPV------PAGADVRFVSGSVLDVLPTIEEAAGAGDIWVVGGGDLAG 128

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIP 326
            F+++  +D I L  + + +  GG P
Sbjct: 129 QFLDAGALDEIRLSVAPVAL-AGGAP 153


>gi|308067306|ref|YP_003868911.1| hypothetical protein PPE_00519 [Paenibacillus polymyxa E681]
 gi|305856585|gb|ADM68373.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 179

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 3/99 (3%)

Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
            AL  +++  ++ + D   L +L+  L  +   ++ + GG  +  +F+ + L++  I+  
Sbjct: 82  RALTEQQQAPHVTFTDEA-LTELVPRLQEQSEGAVWLVGGGQLVRAFLQAGLLEKAIIAI 140

Query: 316 SQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
              V+G+ GIP    EG L   F     +  G    L Y
Sbjct: 141 IPKVLGQ-GIP-LFPEGTLPSTFKLKEIERRGDIALLHY 177


>gi|170032967|ref|XP_001844351.1| tRNA-specific adenosine deaminase subunit TAD2 [Culex
           quinquefasciatus]
 gi|167873308|gb|EDS36691.1| tRNA-specific adenosine deaminase subunit TAD2 [Culex
           quinquefasciatus]
          Length = 165

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 50/157 (31%), Gaps = 17/157 (10%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTA----YGGCPHAEVQALEEA 63
           RFM  AL  +R    L      V C+ V+    +I  G            H E   ++++
Sbjct: 3   RFMEQALEQARLAEQL--KEVPVGCVFVRGQDEIIANGCNRVNETKNATRHVEFLCIDQS 60

Query: 64  GEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ- 117
            E AR         +  +           CA  +++ G+R ++    +      G  L  
Sbjct: 61  LEYARQRDIPWEDLFREVTVVVTVEPCIMCAGALLQLGVREIIYGCGNDRFGGCGTVLDV 120

Query: 118 --WLSQKG--IIVDRMMESEGKIFLHAYLTRQVEKRS 150
              L +KG   I   +   E    L  +   +     
Sbjct: 121 PGLLLEKGSLPIRGGVRAEEAMQLLREFYKGENPSAP 157


>gi|161528455|ref|YP_001582281.1| CMP/dCMP deaminase zinc-binding [Nitrosopumilus maritimus SCM1]
 gi|160339756|gb|ABX12843.1| CMP/dCMP deaminase zinc-binding [Nitrosopumilus maritimus SCM1]
          Length = 200

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 50/170 (29%), Gaps = 52/170 (30%)

Query: 5   SFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----------- 52
           ++D  FM  A   ++     +T     V  +IV++   +  G                  
Sbjct: 35  NWDEYFMLQA-ELAKLRSNCITR---QVGAVIVRNHRQLATGYNGTPPGIKNCFDGGCKR 90

Query: 53  --------------------PHAEVQALEEAG-----EEARGATAYVTLEPCSHYGRSPP 87
                                HAE  A+             GA  Y T  PC        
Sbjct: 91  CQLRMEGKIESGASLDRCLCNHAEANAIMHCAILGIEAGIEGAVLYTTFVPCLE------ 144

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
           C +  I  GIR+ V     P+          L + G+ V ++ +++   +
Sbjct: 145 CTKMAITIGIRKFVCLDSYPET-----DFDLLKEAGVEVIQLDKAKIAKW 189


>gi|228983850|ref|ZP_04144045.1| Enzyme [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228775899|gb|EEM24270.1| Enzyme [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 173

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             +     D+ +    L  +  + + + GG ++   F  + L+D  ++  +  ++G  G+
Sbjct: 84  EHVEFVNEDVVEFTKRLKEQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GV 142

Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           P   ++   E N        FG  V L Y
Sbjct: 143 P-LFQDKNPEINLTLTDTKRFGQFVNLYY 170


>gi|229154351|ref|ZP_04282471.1| Enzyme [Bacillus cereus ATCC 4342]
 gi|228629175|gb|EEK85882.1| Enzyme [Bacillus cereus ATCC 4342]
          Length = 179

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             +     D+ +    L  +  + + + GG ++   F  + L+D  ++  +  ++G  G+
Sbjct: 90  EHVEFVNEDVVEFTKRLKEQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GV 148

Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           P   ++   E N        FG  V L Y
Sbjct: 149 P-LFQDKNPEINLTLTDTKRFGQFVNLYY 176


>gi|229188856|ref|ZP_04315889.1| Enzyme [Bacillus cereus ATCC 10876]
 gi|228594561|gb|EEK52347.1| Enzyme [Bacillus cereus ATCC 10876]
          Length = 173

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             +     D+ +    L  +  + + + GG ++   F  + L+D  ++  +  ++G  G+
Sbjct: 84  EHVEFVNEDVVEFTKRLKEQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GV 142

Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           P   ++   E N        FG  V L Y
Sbjct: 143 P-LFQDKNPEINLTLTDTKRFGQFVNLYY 170


>gi|209966841|ref|YP_002299756.1| cytidine and deoxycytidylate deaminase, putative [Rhodospirillum
           centenum SW]
 gi|209960307|gb|ACJ00944.1| cytidine and deoxycytidylate deaminase, putative [Rhodospirillum
           centenum SW]
          Length = 158

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 36/109 (33%), Gaps = 19/109 (17%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG------RGVTAYGGCPHAEVQALEEA- 63
           M  AL  +    G     P V  +IV             R         HAEV A+  A 
Sbjct: 15  MRQALAEAE-AAGQRGEVP-VGAVIVDPATGAVVAAAGNRTEELADPTAHAEVLAIRAAC 72

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                    G   YVTLEPC+       CA  I    +RRV     DP 
Sbjct: 73  AVLGAPRLPGLDLYVTLEPCAM------CAAAISFARLRRVYFGAYDPK 115


>gi|168495122|ref|YP_001686860.1| dCMP deaminase [Azospirillum phage Cd]
 gi|46241683|gb|AAS83068.1| dCMP deaminase-like protein [Azospirillum brasilense]
 gi|168148881|emb|CAO99345.1| dCMP deaminase [Azospirillum phage Cd]
          Length = 167

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 46/140 (32%), Gaps = 33/140 (23%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGC---------- 52
           ++ D RFM+ A   +            V  ++V   G +   G     G           
Sbjct: 24  TAADQRFMTYARHQAAKSK---DPCKQVGAVVVGPLGEIRAIGHNRLPGDRDCPDTYADK 80

Query: 53  -------PHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAEV A+     AG    G T +VT  PC        CA+ ++E GI  VV 
Sbjct: 81  RRKRERIVHAEVVAITSAARAGVALDGGTLFVT-HPCC-----ADCARMLVEAGIVEVVW 134

Query: 103 CVDDPDVRVSGRGLQWLSQK 122
                    S    + L + 
Sbjct: 135 PEQ---ATFSEHWQESLREA 151


>gi|53803359|ref|YP_114888.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Methylococcus
           capsulatus str. Bath]
 gi|53757120|gb|AAU91411.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Methylococcus
           capsulatus str. Bath]
          Length = 355

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 72/236 (30%), Gaps = 52/236 (22%)

Query: 92  IIECGIRRVVVCVDDP-DVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR- 149
           I E     + +    P +       +++L  K   +  M+  E K     +L    E + 
Sbjct: 110 IDELRRYGIPIAARVPIEAPSHPENVRYLRAKVEKMSHMLSFERKRPRFPFLDALCEHQS 169

Query: 150 --------SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
                     +TL    S D        G  P  G  +      LRA  +  L   G  L
Sbjct: 170 EGPVSPRRPFVTLSRVQSLD-------GGDAPTAGAEACELAGALRAVHEGTLTASGPAL 222

Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
                LT R                  K  ++  +  T      ++    D         
Sbjct: 223 ----RLTVR---------------GGRKAPVNFAMAGTPSAVGDVVAIPADAR------- 256

Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
                       DL  +L  ++G GV +LLVEG A ++  F++  L D  ++    
Sbjct: 257 ---------GDIDLAAVLATILGLGVRTLLVEGDAGLSGRFLDQALADYCVITVVP 303


>gi|329939288|ref|ZP_08288624.1| putative cytidine and deoxycytidylate deaminase [Streptomyces
           griseoaurantiacus M045]
 gi|329301517|gb|EGG45411.1| putative cytidine and deoxycytidylate deaminase [Streptomyces
           griseoaurantiacus M045]
          Length = 294

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 50/157 (31%), Gaps = 41/157 (26%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIV--IGRGVTAY-------GGCP- 53
           ++ D RFM+ ALR +            V  +  +DG V  +               G P 
Sbjct: 137 AALDRRFMAGALREAGRSSDWWR---QVGAVAARDGEVLRVAHNHHHPTEYAPYIDGDPR 193

Query: 54  ---------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                          HAE   +  A   G    GA  YV+  PC      P CA+ ++E 
Sbjct: 194 NEFSRGVRTDLSTAIHAEASLVAGAAGEGMSLAGADLYVSTFPC------PACARLVVEA 247

Query: 96  GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
           G R                G + L   G+ +  +  +
Sbjct: 248 GFRACYFAG----PYAMLDGEEILRAGGVELVWVDMA 280


>gi|254823485|ref|ZP_05228486.1| CMP/dCMP deaminase, zinc-binding protein [Mycobacterium
           intracellulare ATCC 13950]
          Length = 143

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 57/143 (39%), Gaps = 17/143 (11%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAG--EEA 67
           A   +R  +      P  A L   DG+++GRG       G P  HAEV A   AG   + 
Sbjct: 5   AFEEARSGLAE-GGIPIGAALFTADGVLLGRGRNRRVQQGDPSLHAEVDAFRAAGRQRDY 63

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           R      TL PC +      C+  + +  I  +VV     + R    G +WL+Q G+ V 
Sbjct: 64  RSTVMVTTLSPCWY------CSGLVRQFNIGALVVG----ESRTFTGGHEWLAQHGVTVT 113

Query: 128 RMMESEGKIFLHAYLTRQVEKRS 150
            + +      + A++    E   
Sbjct: 114 VVDDPRCTQMMSAFIAEHPELWH 136


>gi|220904883|ref|YP_002480195.1| CMP/dCMP deaminase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869182|gb|ACL49517.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 158

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 43/130 (33%), Gaps = 40/130 (30%)

Query: 30  SVACLIVKDGIVIGRGV---------------------------TAYGGCPHAEVQALEE 62
            V  + VKD  ++  G                                   HAE   + +
Sbjct: 27  RVGAVAVKDKRILATGYNGAPAGVPHCLEVGCLREQMGIPSGQRHEICRGLHAEQNVIIQ 86

Query: 63  A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           A   G    GA  Y T  PC        C++ +I CGIRR+      PD   +      L
Sbjct: 87  AAVHGINISGAELYCTTHPCVQ------CSKMLINCGIRRIYYAEHYPDELATT----ML 136

Query: 120 SQKGIIVDRM 129
            + GI ++R+
Sbjct: 137 KEAGIQLERL 146


>gi|220912556|ref|YP_002487865.1| bifunctional deaminase-reductase domain protein [Arthrobacter
           chlorophenolicus A6]
 gi|219859434|gb|ACL39776.1| bifunctional deaminase-reductase domain protein [Arthrobacter
           chlorophenolicus A6]
          Length = 183

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%)

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
            ++ V GG  +A  F  + L+D IIL    +++G+G    P+E           R 
Sbjct: 111 RNIWVVGGGNLAAQFAAAGLLDEIILSVIPVILGDGKRLLPIEGPTPPLELTASRT 166


>gi|311748025|ref|ZP_07721810.1| riboflavin biosynthesis protein RibD [Algoriphagus sp. PR1]
 gi|126575006|gb|EAZ79364.1| riboflavin biosynthesis protein RibD [Algoriphagus sp. PR1]
          Length = 178

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           ++ ++L+ + G+G   L ++GG     +F+   L+D +++    +++G G       +  
Sbjct: 96  NISEILSKIHGKGFYRLYIDGG-KTIQTFLKKDLIDEMVITTIPVLLGSGIR--LFGDLP 152

Query: 334 LEKNFMCV-RRDYFGSDVCLEYIG 356
            E  F C+    + G  V   Y+ 
Sbjct: 153 KELVFECINSTRFLGKVVQNHYVR 176


>gi|115725150|ref|XP_781375.2| PREDICTED: similar to MGC81193 protein [Strongylocentrotus
           purpuratus]
 gi|115958553|ref|XP_001190940.1| PREDICTED: similar to MGC81193 protein [Strongylocentrotus
           purpuratus]
          Length = 205

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 54/148 (36%), Gaps = 35/148 (23%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGV----------------- 46
           +++  FMS A   ++        +  V   IV +   ++G G                  
Sbjct: 66  AWEDYFMSVAFLSAQRSK---DPSSQVGACIVNEEKKIVGIGYNGMPNGCNDDVLPWSRD 122

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    HAE+ A+  +   + +G T YV L PC+       CA+ II+ GIR+
Sbjct: 123 SEDWLETKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNE------CAKVIIQSGIRK 176

Query: 100 VVVCVD-DPDVRVSGRGLQWLSQKGIIV 126
           +V   D   +        +     G+  
Sbjct: 177 IVFLSDRYQEKDTIKASKRMFDYAGVTY 204


>gi|260806557|ref|XP_002598150.1| hypothetical protein BRAFLDRAFT_82934 [Branchiostoma floridae]
 gi|229283422|gb|EEN54162.1| hypothetical protein BRAFLDRAFT_82934 [Branchiostoma floridae]
          Length = 200

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 51/157 (32%), Gaps = 33/157 (21%)

Query: 26  STNPSVACLIVK-DGIVIGRGV-----------------------TAYGGCPHAEVQA-L 60
           S +  V   IV  +  ++G G                        T Y    HAE+ A L
Sbjct: 50  SPH-QVGACIVNSEKKIVGIGYNGMPNGCSDDKLPWSRTAENRLDTKYPYVCHAELNAIL 108

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD-DPDVRVSGRGLQWL 119
            +   + +G T YV L PC+       CA+ +I+ GIR +V   D              L
Sbjct: 109 NKNSADVKGCTMYVALFPCNE------CAKLVIQSGIREIVFMSDKYHHTPEMTASRTLL 162

Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKI 156
              G+   + +    +I +              ++  
Sbjct: 163 DLAGVKYTQFVPKRQQITIAFDAINPTVTNPLASIAS 199


>gi|262341257|ref|YP_003284112.1| cytidine/deoxycytidylate deaminase family protein [Blattabacterium
           sp. (Blattella germanica) str. Bge]
 gi|262272594|gb|ACY40502.1| cytidine/deoxycytidylate deaminase family protein [Blattabacterium
           sp. (Blattella germanica) str. Bge]
          Length = 148

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 53/151 (35%), Gaps = 19/151 (12%)

Query: 11  MSAALRFSRWHVGLTSTN-PSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
           M  AL+ +         N   +   I  + +VI +      T      HAE+  +  A  
Sbjct: 1   MKIALKEAFIAF---HKNEVPIGAAITYEDVVIAKAHNLTETFSNITAHAEMLVINLASN 57

Query: 66  EARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             R       T YVTLEPC        CA  +    I RVV    +  +R        L 
Sbjct: 58  YLRNKYIKKCTLYVTLEPCIM------CAGALFLSQIGRVVCGAPNNSIRGFSYSGIKLH 111

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSH 151
            K   V  +M+++ K  +  +   +  ++  
Sbjct: 112 PKTKFVSGIMKNQCKALIQKFFFFKRIQKHQ 142


>gi|237785635|ref|YP_002906340.1| putative riboflavin specific deaminase [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758547|gb|ACR17797.1| putative riboflavin specific deaminase [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 300

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 77/239 (32%), Gaps = 47/239 (19%)

Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            +     + +    L  +L   V +  +I   +  + D     +   S  + G I     
Sbjct: 8   TVFPPDNDPDIDSALERFLPYPVPQTLNIRAIMVSTIDGASVASSGTSGELGGPIDSAMF 67

Query: 184 HLLRAQSDAILVGIGTVLADD--P-ELTCRLNGLQEH---SPMR-IIL------DPHFKL 230
            L R Q++A++ G+ T LA+   P EL+      + H    P   ++L      D     
Sbjct: 68  ALHRRQTEAVIAGLSTALAEGYGPIELSANEIQTRSHHGLPPTADLVLTTHQLDDKKLSD 127

Query: 231 SLDSKIIKTALL-------------------------APVIIVTENDDPVL------ALA 259
            L S +  T                              VII+T+               
Sbjct: 128 ILSSPLTTTDGTNDDHPESGDGDKDSDNHSSEEIQHGGSVIILTDRSASETSTFSKNRTM 187

Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLL-VEGGAAVAHSFINSRLVDSIILYRSQ 317
            R   IN+   D  D   +   L  R   S++  EGG     S I SR +D +IL    
Sbjct: 188 LRNHGINVDVLDKLDGTHIRQWLSDR--YSVVDCEGGPRFLGSLIASRAIDEVILTIHP 244


>gi|271964778|ref|YP_003338974.1| guanine deaminase [Streptosporangium roseum DSM 43021]
 gi|270507953|gb|ACZ86231.1| Guanine deaminase [Streptosporangium roseum DSM 43021]
          Length = 188

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
          FM+ A+R +   V      P    +IVKDG +I RG            H EV+A+ +A
Sbjct: 6  FMTEAVRLATESVMNGWGGP-FGTVIVKDGDIIARGQNRVLLTGDPTAHGEVEAIRKA 62


>gi|172035303|ref|YP_001801804.1| putative cytidine/deoxycytidylate deaminase [Cyanothece sp. ATCC
           51142]
 gi|171696757|gb|ACB49738.1| putative cytidine/deoxycytidylate deaminase [Cyanothece sp. ATCC
           51142]
          Length = 180

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 46/147 (31%), Gaps = 39/147 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCPHAEVQ----- 58
           ++D  F+  A + +      T     V  +IVKD  ++  G      G  H   Q     
Sbjct: 10  TWDEYFIMIA-KLA--ATRSTCLAFPVGAVIVKDRQLLATGYNGSPSGTAHCTAQGFCYP 66

Query: 59  --------------ALE----------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                         A+           + G    GA+ YVTLEPC        C + II 
Sbjct: 67  GLDSCDSSSSLPSRAIHAEANAIAQAAKYGISTHGASIYVTLEPC------VSCLKLIIS 120

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            GI+ V           +     +L  
Sbjct: 121 AGIKDVFYETGFNKGEKALVRDAFLKD 147


>gi|75764881|ref|ZP_00744241.1| Cytosine deaminase family [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74487631|gb|EAO51487.1| Cytosine deaminase family [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 104

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 11/82 (13%)

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL-----S 120
               AT YVTLEPC      P CA  I+   ++RVV    DP    +G  +  L     +
Sbjct: 10  RLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFN 63

Query: 121 QKGIIVDRMMESEGKIFLHAYL 142
            +  +V  ++E E    L  + 
Sbjct: 64  HQCEVVTGVLEEECGTLLTNFF 85


>gi|302559794|ref|ZP_07312136.1| cytidine and deoxycytidylate deaminase [Streptomyces griseoflavus
           Tu4000]
 gi|302477412|gb|EFL40505.1| cytidine and deoxycytidylate deaminase [Streptomyces griseoflavus
           Tu4000]
          Length = 107

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 39/107 (36%), Gaps = 18/107 (16%)

Query: 48  AYGGCP--HAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
              G P  HAEV AL  A          G T  VTLEPC        CA  I +  + RV
Sbjct: 4   EAAGDPTAHAEVLALRRAAAELGEWRLAGCTLVVTLEPC------TMCAGAIQQSRVDRV 57

Query: 101 VVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
           V    D     +G          L+ +  +++ ++  E    L  + 
Sbjct: 58  VYGARDEKAGAAGSLWDLVRDRRLNHRPEVIEGVLSEECARLLTEFF 104


>gi|47214735|emb|CAG01270.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 114

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 34/117 (29%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        +  V   IV  +  ++G G                  
Sbjct: 7   EWPEYFMAVAFLSAQRSK---DPSSQVGACIVNPENKIVGIGYNGMPNGCDDDLLPWSRS 63

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                 T Y    HAE+ A+  +   + +G T YV L PC+       CA+ II+ G
Sbjct: 64  AEDHLDTKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNE------CAKLIIQAG 114


>gi|88799403|ref|ZP_01114981.1| hypothetical protein MED297_17393 [Reinekea sp. MED297]
 gi|88777942|gb|EAR09139.1| hypothetical protein MED297_17393 [Reinekea sp. MED297]
          Length = 161

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 50/137 (36%), Gaps = 27/137 (19%)

Query: 1   MPVSSFDARFMSAA---LRFSR---WHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG-- 51
           M  S  D   M  A   +  +       GL       A ++V  +G +IG+GV       
Sbjct: 1   MCNSISDEFLMEYADKVINLAISNVKEDGL-----PFAAIVVDQNGEIIGKGVNQVAKHL 55

Query: 52  --CPHAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
               HAE+QA+ EA         +G    V+ EPC+       C   I    I +VV+  
Sbjct: 56  DCTAHAEIQAIREASGNEKTVSLKGMILIVSGEPCA------LCYMAIRMAEIMKVVIVS 109

Query: 105 DDPDVRVSGRGLQWLSQ 121
           +  +    G    W  +
Sbjct: 110 NRYEAEKHGFDYLWTYE 126


>gi|195495983|ref|XP_002095501.1| GE19654 [Drosophila yakuba]
 gi|194181602|gb|EDW95213.1| GE19654 [Drosophila yakuba]
          Length = 199

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 50/159 (31%), Gaps = 40/159 (25%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT---------------AY 49
           +D  FM+ +L  ++           V   IV     ++  G                 A 
Sbjct: 24  WDDYFMATSLLSAKRSK---DPVTQVGACIVDSQNRIVAIGYNGFPRNCSDDVFPWSKAK 80

Query: 50  GGC-------------PHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
            G               HAE  A L   G    G   Y TL PC+       CA+ II+ 
Sbjct: 81  KGAQDFDPLEDKKMYVVHAEANAILNTNGMSLTGTRLYTTLFPCNE------CAKLIIQV 134

Query: 96  GIRRVVVCVDDP-DVRVSGRGLQWLSQKGIIVDRMMESE 133
           GI +V+   D   D        + L   G+   R M  E
Sbjct: 135 GISQVLYLSDKYADKPTYRASKRMLEAVGVGYKRHMPQE 173


>gi|307354614|ref|YP_003895665.1| 5-amino-6-(5-phosphoribosylamino)uracilreductase [Methanoplanus
           petrolearius DSM 11571]
 gi|307157847|gb|ADN37227.1| 5-amino-6-(5-phosphoribosylamino)uracilreductase [Methanoplanus
           petrolearius DSM 11571]
          Length = 221

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 58/148 (39%), Gaps = 17/148 (11%)

Query: 191 DAILVGIGTVLAD-----DPELTCRLNGLQEH-------SPMRIILDPHFKLSLDSKIIK 238
           DA+LVG  T         +P      + L+          P+ +I+D   KL     I +
Sbjct: 37  DAVLVGSDTAKTGVEMFYNPIPAETKSDLKRPEKVPGDTRPVSVIVDSRGKLKGLLHIYR 96

Query: 239 TALLAPVIIV----TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-RGVTSLLVE 293
                  +IV    T   D +  L  R+    +   D  DLK+ + +L    G + ++ +
Sbjct: 97  NLEHVRDVIVLVSETTPADYLKYLEEREYPYLMSGYDRVDLKEAVGLLGDTFGFSRIVSD 156

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG 321
            G  +    I+ R+  S+ +  + ++ G
Sbjct: 157 SGGRLNCILIDERIASSLSIIIAPLIAG 184


>gi|291445595|ref|ZP_06584985.1| bifunctional deaminase-reductase domain-containing protein
           [Streptomyces roseosporus NRRL 15998]
 gi|291348542|gb|EFE75446.1| bifunctional deaminase-reductase domain-containing protein
           [Streptomyces roseosporus NRRL 15998]
          Length = 205

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           GGA +  SF  + L+D   +Y   +++G G       +    +    +    FG+ V +
Sbjct: 141 GGADLLESFRRADLIDEYRVYVHPLILGRGR--PFFRDAEERQRLRLLETRTFGNGVVM 197


>gi|218231716|ref|YP_002365445.1| dihydrofolate reductase family protein [Bacillus cereus B4264]
 gi|218159673|gb|ACK59665.1| dihydrofolate reductase family protein [Bacillus cereus B4264]
          Length = 173

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D+ +    L  +  + + + GG  +   F  + L+D  I+  +  ++G  G+P   ++
Sbjct: 90  NEDVVEFTKRLKAKEGSKIWMVGGGELLREFFKNNLIDEYIVTITPHILGS-GVP-LFQD 147

Query: 332 GYLEKNFMCVRRDYFGSDVCLEY 354
              E N        FG  V L Y
Sbjct: 148 KNPEINLTLTDTKRFGQFVNLYY 170


>gi|86143346|ref|ZP_01061748.1| guanine deaminase [Leeuwenhoekiella blandensis MED217]
 gi|85830251|gb|EAQ48711.1| guanine deaminase [Leeuwenhoekiella blandensis MED217]
          Length = 149

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 18/114 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG-----CPHAEVQALEEAG 64
           F+  A+ +++          +   +IVKDG +I  G     G       HAE+  ++EA 
Sbjct: 9   FLKRAIDWAKRGKAAEGGG-AFGAVIVKDGSIIAEG-HNRVGENTDCTQHAELAMIQEAC 66

Query: 65  EE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           ++      +G   Y + EPC     +   A          V       D + +G
Sbjct: 67  KKLGSKSLKGCILYTSCEPCLMCLGASRWAAL------DAVYYGASAADAKEAG 114


>gi|94265530|ref|ZP_01289278.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [delta
           proteobacterium MLMS-1]
 gi|93453971|gb|EAT04317.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [delta
           proteobacterium MLMS-1]
          Length = 151

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 39/134 (29%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------A 48
           S+D  FM+     ++    L      V  ++V++  ++  G                   
Sbjct: 9   SWDEYFMAITDLVAQRATCLRR---QVGAVLVRERRIVATGYNGAPSNIRHCLEVGCLRQ 65

Query: 49  YGGCP-----------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
             G P           HAE  A+ +A   G   +G+  Y T  PCS       C++ +I 
Sbjct: 66  QQGVPSGERHELCRGLHAEQNAIIQAALHGVSLQGSVLYCTNMPCSI------CSKMLIN 119

Query: 95  CGIRRVVVCVDDPD 108
             + R+      PD
Sbjct: 120 AAVTRIYYRDGYPD 133


>gi|294810932|ref|ZP_06769575.1| Cytosine/adenosine deaminase [Streptomyces clavuligerus ATCC
          27064]
 gi|294323531|gb|EFG05174.1| Cytosine/adenosine deaminase [Streptomyces clavuligerus ATCC
          27064]
          Length = 206

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 8  ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
           +FM+ A R +   V      P    +I K+  ++ RG            H EV+A+ +A
Sbjct: 24 KKFMAEAARLATESVVNGWGGP-FGAVITKNDEIVARGQNRVLLTGDPTAHGEVEAIRKA 82


>gi|87120113|ref|ZP_01076009.1| cytosine deaminase [Marinomonas sp. MED121]
 gi|86164815|gb|EAQ66084.1| cytosine deaminase [Marinomonas sp. MED121]
          Length = 173

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 17/113 (15%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
           M  +  D  ++   L  S+  V   + N     L+V D  +         T      HAE
Sbjct: 12  MKQAEQDNHWLKQTLNLSQAAV--DAGNHPFGALLVIDNRLALEAENTVNTYNDATRHAE 69

Query: 57  VQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
           +  + +A +       + A  Y + EPC+       CA  I   GI++VV   
Sbjct: 70  MNLVSQACQNLSESQRKEAVLYTSTEPCAM------CAGAIYWSGIKQVVYAC 116


>gi|126651196|ref|ZP_01723406.1| Guanine deaminase [Bacillus sp. B14905]
 gi|126592034|gb|EAZ86100.1| Guanine deaminase [Bacillus sp. B14905]
          Length = 152

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 35/101 (34%), Gaps = 15/101 (14%)

Query: 30  SVACLIVKDGIVIGR-GVTAYGGC---PHAEVQALEEAGE-----EARGATAYVTLEPCS 80
                IV+   +I   G T         HAE+ A+ EA +     +      Y T EPC 
Sbjct: 22  PFGATIVRGDEIIAVVGNTMMRDTDITAHAEIVAIREASKKLGTMDLSDCVIYATCEPC- 80

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                P C   II  GI+ V  C    D  V G     +  
Sbjct: 81  -----PMCVSAIIWSGIKEVHYCNTAEDAHVHGFSDMHIRD 116


>gi|217971680|ref|YP_002356431.1| bifunctional deaminase-reductase domain-containing protein
           [Shewanella baltica OS223]
 gi|217496815|gb|ACK45008.1| bifunctional deaminase-reductase domain protein [Shewanella baltica
           OS223]
          Length = 183

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 63/204 (30%), Gaps = 41/204 (20%)

Query: 150 SHITLKIAVSQDNMIGMAGCG-----SVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
              ++ IA + D  I             P T        H      DAI++G  +     
Sbjct: 1   MKASVFIAATLDGYIATPDGDIDFLNQHPSTNPDEDFGYHAFIDTVDAIMMGRKSFEK-- 58

Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
                             +L                +  PV +++ +   V   +   ++
Sbjct: 59  ------------------VLSFDCDWPY--------VNIPVFVLSRSG--VTVPSALSEH 90

Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           + ++  D   + +    L  RG   L ++GG      F+ + L+  + L R   ++G  G
Sbjct: 91  VQVLNGDAASISE---QLKTRGFKHLYIDGG-QTIQGFLAAGLIQELTLTRIPTLLG-KG 145

Query: 325 IPSPLEEGYLEKNFMCVRRDYFGS 348
           IP    +       M +    + +
Sbjct: 146 IP-LFGDLAQALQLMPIHTQQYDN 168


>gi|300789562|ref|YP_003769853.1| cytidine/deoxycytidine deaminase [Amycolatopsis mediterranei U32]
 gi|299799076|gb|ADJ49451.1| cytidine/deoxycytidine deaminase [Amycolatopsis mediterranei U32]
          Length = 141

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 17/111 (15%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGR----GVTAYGGCPHAE- 56
           +   +   +  A+  +R        NP    L+   DG ++       +T      H E 
Sbjct: 1   MKDTEETLLRRAIELAREAR-EEHGNPPFGSLLADADGKILAEDRNTSLTDNDITAHPEL 59

Query: 57  ---VQALEEAGEEARGA-TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                A +    E   A T + + +PC        C   I   G+ RVV  
Sbjct: 60  KLARWAAQNLDPETAAATTMFTSTQPCGM------CTGAIERSGLGRVVYA 104


>gi|190575897|ref|YP_001973742.1| putative deaminase [Stenotrophomonas maltophilia K279a]
 gi|190013819|emb|CAQ47457.1| putative deaminase [Stenotrophomonas maltophilia K279a]
          Length = 150

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 19/143 (13%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG--GCP--HAEVQALEEAGEEAR 68
           A+  +R   GL      +   +   DG ++G G       G P  H E  A  +AG + R
Sbjct: 14  AIAEAR--QGLAEGGVPIGAALYHNDGRLLGCGHNRRVQEGDPSVHGETDAFRKAGRQRR 71

Query: 69  --GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
                   TL PC +      C+  + +  I  VVV     + R    G+ WL + G+ V
Sbjct: 72  YQDTIMVTTLAPCWY------CSGLVRQFNIGTVVVG----ESRTFQGGIDWLRENGVNV 121

Query: 127 DRMMESEGKIFLHAYLTRQVEKR 149
             +   E    L  ++ +  E  
Sbjct: 122 IDLDSQECVDLLGGFIAQHPEIW 144


>gi|297559963|ref|YP_003678937.1| bifunctional deaminase-reductase domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296844411|gb|ADH66431.1| bifunctional deaminase-reductase domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 179

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 68/210 (32%), Gaps = 40/210 (19%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPI---TGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
            S      A S D  I         +    G  + N+      ++ AI+ G GT      
Sbjct: 1   MSKTVYNTATSLDGFIATEDHSLEWLFAADGDDALNETETFIREAGAIVSGAGTYE---- 56

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
                            IL          ++       P  ++T  D P +    R  + 
Sbjct: 57  ----------------WILKHEGDKPWPYQV-------PTWVLTHRDLPGIEGDVRFASA 93

Query: 266 NIIYCDCRDLKK-LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           +    + RDL   ++    GR    + + GG  VA       L+D +++  + + +G G 
Sbjct: 94  DTDQ-ELRDLHAEVVEAADGRD---VWLIGGGGVAADLARLGLLDEVVVSVAPVTLGAG- 148

Query: 325 IPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
             SPL  G +  +   +     G   C+ Y
Sbjct: 149 --SPLLAGRV--DLRVLDVHRAGDFACMRY 174


>gi|189184848|ref|YP_001938633.1| cytosine deaminase [Orientia tsutsugamushi str. Ikeda]
 gi|189181619|dbj|BAG41399.1| cytosine deaminase [Orientia tsutsugamushi str. Ikeda]
          Length = 155

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 41/123 (33%), Gaps = 19/123 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGV----TAYGGCPHAEVQALEEA 63
           FM  A+  +     L      V  ++V      ++ R      T      HAE+ A+ +A
Sbjct: 2   FMLQAIEQASQAFNL--GEVPVGVVMVNRATRTILTRAYNKVETTLNPTFHAEIIAINKA 59

Query: 64  GEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                     G   YV+LEPC+       CA  +    I R+     D        G++ 
Sbjct: 60  CSLLSCKYLHGYDIYVSLEPCAM------CAAALSHVRIDRIFFGAYDEKFGAIENGVRL 113

Query: 119 LSQ 121
              
Sbjct: 114 FYN 116


>gi|290954851|ref|YP_003486033.1| nucleotide deaminase [Streptomyces scabiei 87.22]
 gi|260644377|emb|CBG67462.1| putative nucleotide deaminase [Streptomyces scabiei 87.22]
          Length = 182

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
          M+ A+R +   V      P    +I++DG +I RG            HAEV+A+ +A
Sbjct: 1  MTEAVRLATESVNGGWGGP-FGAVIIRDGEIISRGQNRVLLTGDPTAHAEVEAIRKA 56


>gi|183599213|ref|ZP_02960706.1| hypothetical protein PROSTU_02671 [Providencia stuartii ATCC 25827]
 gi|188021442|gb|EDU59482.1| hypothetical protein PROSTU_02671 [Providencia stuartii ATCC 25827]
          Length = 180

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 73/214 (34%), Gaps = 45/214 (21%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVP---ITGFISKNQVHL-LRAQSDAILVGIGTVLADD 204
                + IA S D  I  A         I      +        + DA+++G  T     
Sbjct: 1   MHRNIIYIATSLDGYIADANNQLDWLFSIPNPGQNDMGFSDFMQRIDAVVMGRTTFET-- 58

Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
                             +     +   D  +           V  N    + +    K 
Sbjct: 59  ------------------VCGFDGEWPYDKPVF----------VLSNSIREIPVKLIGKA 90

Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           ++++  + +D   +++ +   G  +L ++GG+ VA   +   L+D +I+    I++G+ G
Sbjct: 91  VHLVRGEIKD---VISSIHCAGFKTLYIDGGS-VAKQCLAEDLIDEMIITIVPILLGD-G 145

Query: 325 IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           IP           F+ V+ + +      +Y+ KN
Sbjct: 146 IP-LFGNMKKPLQFIHVKSERY-----FDYMVKN 173


>gi|297202099|ref|ZP_06919496.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sviceus ATCC 29083]
 gi|297148038|gb|EFH28836.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sviceus ATCC 29083]
          Length = 193

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCL 352
           GGA +  +F+   LVD + +Y   +++G G    P  +         V    FG+  V L
Sbjct: 124 GGAELGETFLRYGLVDELRIYVHPVLVGRGKPLFPHADTLTS--LRLVESHTFGNGVVLL 181

Query: 353 EYIGK 357
            Y  +
Sbjct: 182 RYEPE 186


>gi|261749231|ref|YP_003256916.1| putative cytosine/adenosine deaminase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497323|gb|ACX83773.1| putative cytosine/adenosine deaminase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 141

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 39/118 (33%), Gaps = 17/118 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEE 66
           M  AL  +   +        +   I  +  +I R      T      HAE+  +  A + 
Sbjct: 1   MKIALEEAL--IAFHKDEVPIGAAITYENGIIARAHNLTETLSDITAHAEMLVINLASDY 58

Query: 67  A-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                 +  T YVT+EPC        CA  +    I RVV    +        G++  
Sbjct: 59  LGKKYIQECTLYVTMEPCIM------CAGALFFSQIGRVVCGTLNYKRGFLYTGIKLH 110


>gi|90415456|ref|ZP_01223390.1| dihydrofolate reductase-like protein [marine gamma proteobacterium
           HTCC2207]
 gi|90332779|gb|EAS47949.1| dihydrofolate reductase-like protein [marine gamma proteobacterium
           HTCC2207]
          Length = 186

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           D+ +L+  L  RG     ++GG     SFI   L++ + + +  +++G+G
Sbjct: 103 DIAELVKDLDARGYKHAYIDGG-ETITSFIELGLINEMTITQVPVLLGDG 151


>gi|114778043|ref|ZP_01452943.1| cytidine/deoxycytidylate deaminase family protein [Mariprofundus
           ferrooxydans PV-1]
 gi|114551649|gb|EAU54202.1| cytidine/deoxycytidylate deaminase family protein [Mariprofundus
           ferrooxydans PV-1]
          Length = 157

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 45/125 (36%), Gaps = 22/125 (17%)

Query: 30  SVAC-LIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
            V   +++ DG     G     T +    HAE++A+  A           AT YVTLEPC
Sbjct: 25  PVGALVVLPDGREFA-GHNAPITLHDPSAHAEMRAMRAACAAVGNYRLNDATLYVTLEPC 83

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-----IIVDRMMESEG 134
                   CA  I+   I RVV   DDP         Q L+         +   +M  E 
Sbjct: 84  ------TMCAGAIVHARIGRVVYGADDPKTGAVTSLYQILADHRLNHQPTVTSGVMADEC 137

Query: 135 KIFLH 139
              L 
Sbjct: 138 SALLK 142


>gi|160873589|ref|YP_001552905.1| deaminase-reductase domain-containing protein [Shewanella baltica
           OS195]
 gi|160859111|gb|ABX47645.1| bifunctional deaminase-reductase domain protein [Shewanella baltica
           OS195]
 gi|315265817|gb|ADT92670.1| bifunctional deaminase-reductase domain protein [Shewanella baltica
           OS678]
          Length = 183

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 44/117 (37%), Gaps = 9/117 (7%)

Query: 235 KIIKTALLAPVI---IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
           K++      P +   +   +   V   +   +++ ++  D   + +    L  RG   L 
Sbjct: 58  KVLSFDCDWPYVNIPVFVLSRSGVTVPSALSEHVKVLNGDAASISE---QLKNRGFKHLY 114

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
           ++GG      F+ + L+  + L R   ++G  GIP    +       M +    + +
Sbjct: 115 IDGG-QTIQGFLAAGLIQELTLTRIPTLLG-KGIP-LFGDLAQALQLMPIHTQQYDN 168


>gi|84686242|ref|ZP_01014137.1| cytidine and deoxycytidylate deaminase family protein
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84665769|gb|EAQ12244.1| cytidine and deoxycytidylate deaminase family protein
           [Rhodobacterales bacterium HTCC2654]
          Length = 150

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 43/128 (33%), Gaps = 21/128 (16%)

Query: 30  SVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
            V  ++V  DG ++ +             HAE   +  A      E       YVTLEPC
Sbjct: 25  PVGAVLVGPDGTIVAQAGNRTRELSDPTAHAETLVIRAACAAAGSERLPDHDLYVTLEPC 84

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEG 134
                 P CA  I    IRR+     DP    +  G +            + D +  +E 
Sbjct: 85  ------PMCAAVISFARIRRLYYGASDPKSGGTAHGARVFSHPQCHHAPDVYDGIAAAEA 138

Query: 135 KIFLHAYL 142
           +  L  + 
Sbjct: 139 ETLLKTFF 146


>gi|119962522|ref|YP_949093.1| cytidine/deoxycytidylate deaminase [Arthrobacter aurescens TC1]
 gi|119949381|gb|ABM08292.1| putative cytidine/deoxycytidylate deaminase [Arthrobacter aurescens
           TC1]
          Length = 164

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 43/119 (36%), Gaps = 19/119 (15%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGC----PHA 55
           M  +    +F++ ++  +  +V  +        +IV  DG     GV           HA
Sbjct: 1   MSTTVTAEQFLATSIELATANVLNSGG--PFGAVIVTADGRAF-EGVNRVTATNDPTAHA 57

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           EV A+  A       +  GAT Y + EPC      P C    +   + RV    D  D 
Sbjct: 58  EVTAIRNACRELGTFDLSGATLYTSCEPC------PMCLASALWARVDRVFFAADRHDA 110


>gi|296533928|ref|ZP_06896452.1| cytosine deaminase [Roseomonas cervicalis ATCC 49957]
 gi|296265745|gb|EFH11846.1| cytosine deaminase [Roseomonas cervicalis ATCC 49957]
          Length = 147

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 50/144 (34%), Gaps = 23/144 (15%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTA----YGGCPHAEVQALEEAG---- 64
           AL+ +R           V  ++    G V+GR        +    HAE+ AL +A     
Sbjct: 7   ALQEARDAAAR--GEVPVGAVVTDAAGRVLGRAGNRVEQDHDASAHAEMLALRQAAAALG 64

Query: 65  -EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW----- 118
                G T  VTLEPC      P CAQ      IRRVV    DP       G +      
Sbjct: 65  SPRLPGCTLTVTLEPC------PMCAQAASFFRIRRVVFGAYDPKGGGVEHGARIYAAPS 118

Query: 119 LSQKGIIVDRMMESEGKIFLHAYL 142
                 +V  + E E    L  + 
Sbjct: 119 CHHAPEVVGGVREGECATLLREFF 142


>gi|116250294|ref|YP_766132.1| purine deaminase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254942|emb|CAK06016.1| putative purine deaminase [Rhizobium leguminosarum bv. viciae 3841]
          Length = 156

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 17/106 (16%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA 63
             F+  A+  SR  V           L+VKDG VI R      T +    HAE+  ++ A
Sbjct: 5   EPFLREAIALSRSAVENGDE--PFGSLLVKDGEVILRAENSVFTGHDMTNHAEMNLVKLA 62

Query: 64  GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
            +          T Y + EPC+       C+  I   GI R+V   
Sbjct: 63  AQHYDTAFLADCTLYTSTEPCAM------CSGAIYWSGIGRMVFAC 102


>gi|89897124|ref|YP_520611.1| hypothetical protein DSY4378 [Desulfitobacterium hafniense Y51]
 gi|89336572|dbj|BAE86167.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 202

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 65/207 (31%), Gaps = 42/207 (20%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
              +  ++A S D  I         IT   S      L AQ D +L+G  T  +      
Sbjct: 22  MRRVRYQVACSMDGYIAAPNDDFDWITPEPSF-DFEALYAQFDTLLMGRRTYES------ 74

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
            R  G        I++    +  +D   ++        IV+E                  
Sbjct: 75  VRAMGESFRGKQVIVVSRSLQ-PVDHPDVE--------IVSEG----------------- 108

Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
                 L+  +  L  +    + + GG  +    +   LVD+       I++G G     
Sbjct: 109 ------LEARVRELRAQPGRDIWLYGGGNLFSQLLAWNLVDTFEPAIIPILLGGG--VQL 160

Query: 329 LEEGYLEKNFMCVRRDYFGSD-VCLEY 354
           L    + +    VR   + S  + LEY
Sbjct: 161 LPPHGIRRRLELVRHRVYPSGMLLLEY 187


>gi|228906398|ref|ZP_04070281.1| Enzyme [Bacillus thuringiensis IBL 200]
 gi|228853214|gb|EEM97988.1| Enzyme [Bacillus thuringiensis IBL 200]
          Length = 173

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D+ +    L  +  + + + GG  +   F  + L+D  I+  +  ++G  G+P   +E
Sbjct: 90  NEDVVEFTKRLKAQEGSKIWMVGGGELLREFFKNNLIDEYIVTITPHILGS-GVP-LFKE 147

Query: 332 GYLEKNFMCVRRDYFGSDVCLEY 354
              E N        FG  V L Y
Sbjct: 148 KNPEINLTLTDTKRFGQFVNLYY 170


>gi|229108258|ref|ZP_04237880.1| Enzyme [Bacillus cereus Rock1-15]
 gi|228675274|gb|EEL30496.1| Enzyme [Bacillus cereus Rock1-15]
          Length = 173

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D+ +    L  +  + + + GG  +   F  + L+D  I+  +  ++G  G+P   +E
Sbjct: 90  NEDVVEFTKRLKAQEGSKIWMVGGGELLREFFKNNLIDEYIVTITPHILGS-GVP-LFKE 147

Query: 332 GYLEKNFMCVRRDYFGSDVCLEY 354
              E N        FG  V L Y
Sbjct: 148 KNPEINLTLTDTKRFGQFVNLYY 170


>gi|254489981|ref|ZP_05103176.1| hypothetical protein MDMS009_312 [Methylophaga thiooxidans DMS010]
 gi|224465066|gb|EEF81320.1| hypothetical protein MDMS009_312 [Methylophaga thiooxydans DMS010]
          Length = 186

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 5/78 (6%)

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           IIV  N           K    I     D++ L+  L   G     ++GG+    SF+NS
Sbjct: 79  IIVLSNTIKEAPENLSGK----IELYSGDIQDLILALENGGHKHAYIDGGST-ITSFLNS 133

Query: 306 RLVDSIILYRSQIVIGEG 323
           +L+D + + ++ +++G+G
Sbjct: 134 KLIDEMTITKAPVLLGDG 151


>gi|242219302|ref|XP_002475432.1| predicted protein [Postia placenta Mad-698-R]
 gi|220725368|gb|EED79358.1| predicted protein [Postia placenta Mad-698-R]
          Length = 137

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 48/148 (32%), Gaps = 38/148 (25%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-------- 53
           M  A   +            V  ++V++  ++  G             GGC         
Sbjct: 1   MQLA-ELASERSNCMKR--RVGAILVRNKRILATGYNGTPRGLTNCNEGGCTRCNSGKEA 57

Query: 54  -------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                  HAE  AL EAG E    GA  Y    PC        C   II+ G++ VV  +
Sbjct: 58  SDECVCLHAEENALLEAGRERVGDGAVLYCNTCPCLK------CTIKIIQTGVKEVVYNL 111

Query: 105 DDPDVRVSGRGLQWLSQKGIIVDRMMES 132
                +V        S+ G+++ R    
Sbjct: 112 SY---KVDDSSAALFSEAGVVLRRHSMP 136


>gi|159903565|ref|YP_001550909.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
           marinus str. MIT 9211]
 gi|159888741|gb|ABX08955.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
           marinus str. MIT 9211]
          Length = 165

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 45/121 (37%), Gaps = 18/121 (14%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV----TAYGGCPHAEVQALEE 62
             +M   L  +   +G     P V  +I+ + G  IG G     T      HAE+ AL +
Sbjct: 15  REWMRRLLNRANE-LGKEDEVP-VIAMILDNKGHCIGHGRNTRNTERDPLGHAELVALRQ 72

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A    +       T  VTLEPC        CA  +I+  + +V+    D      G  + 
Sbjct: 73  AKWLKKDWRFNDCTIIVTLEPCQM------CAGALIQARMGKVIFGAPDTKRGGLGGSID 126

Query: 118 W 118
            
Sbjct: 127 L 127


>gi|269928875|ref|YP_003321196.1| bifunctional deaminase-reductase domain-containing protein
           [Sphaerobacter thermophilus DSM 20745]
 gi|269788232|gb|ACZ40374.1| bifunctional deaminase-reductase domain protein [Sphaerobacter
           thermophilus DSM 20745]
          Length = 192

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 17/120 (14%)

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
           ++I +     P ++ ++  D V        N  ++  D  D    L    G+ +      
Sbjct: 77  ARIWRD---TPKVVFSKTLDQV------GPNARLVRDDVVDEVARLKQQPGKDIDV---- 123

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-FMCVRRDYFGSDVCL 352
           GGA++A S +   L+D   L+   +V+G G   +P+     ++     +    F S V  
Sbjct: 124 GGASIAASLMRHDLIDEYHLFIHPVVLGGG---TPMFPALSDQRLLRLIDMRTFRSGVVF 180


>gi|163790315|ref|ZP_02184747.1| comE operon protein 2, putative [Carnobacterium sp. AT7]
 gi|159874386|gb|EDP68458.1| comE operon protein 2, putative [Carnobacterium sp. AT7]
          Length = 171

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 28/110 (25%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP-------------------HAEVQALEEA---GEEAR 68
           V   IV++  +I  G                           HAE+ A+ +    G + +
Sbjct: 29  VGATIVREKRIIAGGYNGSVSGDVHCIDEGCYVVDGHCLRTIHAEMNAILQCAKFGAQTQ 88

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           GA  YVT  PC        C + II+ GI ++    D  +   + + ++ 
Sbjct: 89  GAEIYVTHFPCLQ------CTKMIIQAGITKIYYLEDYHNDPYALKLIEQ 132


>gi|256395487|ref|YP_003117051.1| bifunctional deaminase-reductase domain-containing protein
           [Catenulispora acidiphila DSM 44928]
 gi|256361713|gb|ACU75210.1| bifunctional deaminase-reductase domain protein [Catenulispora
           acidiphila DSM 44928]
          Length = 177

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 4/84 (4%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           D    +  L  +G   L+V G   ++ + + + LVD +    + +V G G   +PL    
Sbjct: 96  DAVAAVRELKEQGDGDLMVYGYGRLSQALLEAGLVDRLDFTVNPVVFGSG---TPLFRPG 152

Query: 334 LEKNFMCVRRDYFGSD-VCLEYIG 356
              N         G+  V L Y+ 
Sbjct: 153 KRVNLRLDSVSRRGNGAVALSYVP 176


>gi|228937887|ref|ZP_04100515.1| Enzyme [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228970768|ref|ZP_04131408.1| Enzyme [Bacillus thuringiensis serovar thuringiensis str. T01001]
 gi|228788893|gb|EEM36832.1| Enzyme [Bacillus thuringiensis serovar thuringiensis str. T01001]
 gi|228821793|gb|EEM67793.1| Enzyme [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|326938366|gb|AEA14262.1| pyrimidine reductase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 146

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D+ +    L  +  + + + GG ++   F  + L+D  I+  +  ++G  G+P   ++
Sbjct: 63  NEDVVEFTKRLKAQEGSKIWMVGGGSLLREFFKNNLIDEYIVTITPHILGS-GVP-LFQD 120

Query: 332 GYLEKNFMCVRRDYFGSDVCLEY 354
              E N        FG  V L Y
Sbjct: 121 KNPEINLTLTDTKRFGQFVNLYY 143


>gi|228977343|ref|ZP_04137738.1| Enzyme [Bacillus thuringiensis Bt407]
 gi|228782320|gb|EEM30503.1| Enzyme [Bacillus thuringiensis Bt407]
          Length = 149

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D+ +    L  +  + + + GG ++   F  + L+D  I+  +  ++G  G+P   ++
Sbjct: 66  NEDVVEFTKRLKAQEGSKIWMVGGGSLLREFFKNNLIDEYIVTITPHILGS-GVP-LFQD 123

Query: 332 GYLEKNFMCVRRDYFGSDVCLEY 354
              E N        FG  V L Y
Sbjct: 124 KNPEINLTLTDTKRFGQFVNLYY 146


>gi|312262684|gb|ADQ52979.1| Cd dCMP deaminase [Aeromonas phage PX29]
          Length = 182

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 52/162 (32%), Gaps = 58/162 (35%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP--------------- 53
           F+  A   ++    ++     V  +I KD   I  G      G P               
Sbjct: 6   FLQKAFLVAQESKCVSY---RVGAIISKDDRPISSGYNGTISGQPNCDEVAEENGWAEYV 62

Query: 54  ----------------------------HAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
                                       HAE+ A+     +G+   GAT Y T+ PC   
Sbjct: 63  NVPGVGTELRLRQDKSDEYSAWAKSNVIHAEMNAILFAANSGKPIEGATMYCTMAPC--- 119

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
              P CA+ I +  I+ +V C D      +    + L++ G+
Sbjct: 120 ---PECAKTIAQAKIKTLVYCEDYN--GSNADWAEILTRCGV 156


>gi|307822590|ref|ZP_07652821.1| CMP/dCMP deaminase zinc-binding [Methylobacter tundripaludum SV96]
 gi|307736194|gb|EFO07040.1| CMP/dCMP deaminase zinc-binding [Methylobacter tundripaludum SV96]
          Length = 150

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 52/154 (33%), Gaps = 17/154 (11%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGEEA 67
            A+ F+    G       V   +    G ++GRG            H E  A  +AG + 
Sbjct: 7   LAVAFAEAQAGFDEGGVPVGAALFDAHGNLLGRGRNRRVQDNDPSIHGETDAFRKAGRQT 66

Query: 68  --RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
             R      TL PC +      C+  I +  I  VVV             L WL   G+ 
Sbjct: 67  NYRDKILVTTLAPCWY------CSGLIRQFNIGTVVVGESVNFEGH----LDWLKDAGVH 116

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
           +  M +++    +  ++ +  +       + A +
Sbjct: 117 IVEMNDADCIALMRRFIEQSPQIWFEDIGECACT 150


>gi|297582627|ref|YP_003698407.1| bifunctional deaminase-reductase domain-containing protein
           [Bacillus selenitireducens MLS10]
 gi|297141084|gb|ADH97841.1| bifunctional deaminase-reductase domain protein [Bacillus
           selenitireducens MLS10]
          Length = 180

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D    +  L      ++ + GG  +  +   + L+DS I+  + +++G  GIP  L  
Sbjct: 93  NEDPVSFVRSLKASDGGTIWLVGGGELVKTLYEAGLIDSYIITIAPVLLG-NGIPLFLTN 151

Query: 332 GYLEKNFMCVRRDYFGSDVCLEYIGK 357
               +    +  + +G  + L Y  K
Sbjct: 152 SR-HQELELLNSERYGQFIQLYYKRK 176


>gi|229143376|ref|ZP_04271807.1| Enzyme [Bacillus cereus BDRD-ST24]
 gi|228640183|gb|EEK96582.1| Enzyme [Bacillus cereus BDRD-ST24]
          Length = 173

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D+ +    L  +  + + + GG  +   F  + L+D  ++  +  ++G  G+P   ++
Sbjct: 90  NEDVVEFTKRLKAQEGSKIWMVGGGELLREFFKNNLIDEYVVTITPHILGS-GVP-LFQD 147

Query: 332 GYLEKNFMCVRRDYFGSDVCLEY 354
              E N   +    FG  V L Y
Sbjct: 148 KNPEINLTLMDTKRFGQFVNLYY 170


>gi|254820531|ref|ZP_05225532.1| cytidine/deoxycytidylate deaminase [Mycobacterium intracellulare
           ATCC 13950]
          Length = 166

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 35/102 (34%), Gaps = 17/102 (16%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA-- 63
           F    +  +R +V         A +IV+ G V+               HAE+ A+ EA  
Sbjct: 4   FAQRTIELARRNVAEGGR--PFATVIVRGGEVLAESANRVAQTNDPTAHAEILAIREACV 61

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
               E     T YV   PC      P C   +  C  R VV 
Sbjct: 62  KLGTEHLVDTTIYVLAHPC------PMCLGSLYYCSPREVVF 97


>gi|94264510|ref|ZP_01288297.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [delta
           proteobacterium MLMS-1]
 gi|93455069|gb|EAT05296.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [delta
           proteobacterium MLMS-1]
          Length = 151

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 39/134 (29%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------A 48
           S+D  FM+     ++    L      V  ++V++  ++  G                   
Sbjct: 9   SWDEYFMAITDLVAQRATCLRR---QVGAVLVRERRIVATGYNGAPSHIRHCLEVGCLRQ 65

Query: 49  YGGCP-----------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
             G P           HAE  A+ +A   G   +G+  Y T  PCS       C++ +I 
Sbjct: 66  QQGVPSGERHELCRGLHAEQNAIIQAALHGVSLQGSVLYCTNMPCSI------CSKMLIN 119

Query: 95  CGIRRVVVCVDDPD 108
             + R+      PD
Sbjct: 120 AAVTRIYYRDGYPD 133


>gi|134102530|ref|YP_001108191.1| guanine deaminase [Saccharopolyspora erythraea NRRL 2338]
 gi|291007103|ref|ZP_06565076.1| guanine deaminase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915153|emb|CAM05266.1| guanine deaminase [Saccharopolyspora erythraea NRRL 2338]
          Length = 188

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 7  DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
          D  FM+ A+R +   V      P    +I     ++ RG            H EV+A+ +
Sbjct: 3  DEEFMAEAVRLATESVVNGWGGP-FGAVITDGERIVARGQNRVLLTGDPTAHGEVEAIRK 61

Query: 63 A 63
          A
Sbjct: 62 A 62


>gi|81299995|ref|YP_400203.1| putative riboflavin-specific deaminase [Synechococcus elongatus PCC
           7942]
 gi|56685332|dbj|BAD78554.1| a part of riboflavin biosynthesis protein RibD [Synechococcus
           elongatus PCC 6301]
 gi|81168876|gb|ABB57216.1| putative riboflavin-specific deaminase [Synechococcus elongatus PCC
           7942]
          Length = 232

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 9/140 (6%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA------- 202
             +   +A S D  I  A            + ++  + AQSDA+L+G  T+ A       
Sbjct: 1   MRVVAVLATSLDGRIAEAAAVPARFGSAQDQRRLETIVAQSDAVLMGAATLRAYGTCRSV 60

Query: 203 DDPEL-TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
            +P+L   R +  Q   P++II     ++    +  +   +   ++ TE           
Sbjct: 61  TNPQLQQQRRDRGQSPQPVQIICSASGQIEPACRFFQQP-VPRWLLTTEQGRDRWRQESG 119

Query: 262 KKNINIIYCDCRDLKKLLTI 281
            + + I      D ++    
Sbjct: 120 FEAVLIAGQTQLDWEQAFAQ 139


>gi|297625715|ref|YP_003687478.1| deoxycytidylate deaminase (dCMP deaminase) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921480|emb|CBL56034.1| Deoxycytidylate deaminase (dCMP deaminase) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 154

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 45/139 (32%), Gaps = 46/139 (33%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA----------- 48
           + V S+D  F+      +            V  ++V  D  +I  G              
Sbjct: 10  ITVPSWDEYFLGITQAVAARAKCTRR---RVGAVLVGPDHRIIATGYNGAAPGRPDCLEG 66

Query: 49  -------------------YGGCP------HAEVQALEEAGEEARGATAYVTLEPCSHYG 83
                                G P      HAE+ AL  A  + +GATA++T EPC    
Sbjct: 67  ACPRGRLSYDEIPGLGDYDRPGTPGFCIAIHAEMNALLFATRDTKGATAFITDEPC---- 122

Query: 84  RSPPCAQFIIECGIRRVVV 102
             P C + +   GI R V 
Sbjct: 123 --PGCRKALAAAGIVRAVW 139


>gi|25027302|ref|NP_737356.1| hypothetical protein CE0746 [Corynebacterium efficiens YS-314]
 gi|259506559|ref|ZP_05749461.1| dihydrofolate reductase [Corynebacterium efficiens YS-314]
 gi|23492583|dbj|BAC17556.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259165979|gb|EEW50533.1| dihydrofolate reductase [Corynebacterium efficiens YS-314]
          Length = 181

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           + V GG  +A  F+++  +D IIL  + + +   G P+ L           V     G  
Sbjct: 114 IWVMGGGDLAGQFLDTGALDRIILTIAPVFL-PSGRPT-LPRRLESDRLTLVGTRPLGQF 171

Query: 350 VCLEY 354
           V + Y
Sbjct: 172 VEVTY 176


>gi|239624449|ref|ZP_04667480.1| cytidine/deoxycytidylate deaminase family protein [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239520835|gb|EEQ60701.1| cytidine/deoxycytidylate deaminase family protein [Clostridiales
           bacterium 1_7_47FAA]
          Length = 165

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 43/114 (37%), Gaps = 18/114 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGR----GVTAYGGCPHAEVQA 59
           S D R +      SR        N     L+  K+G ++       +T      HAE Q 
Sbjct: 8   SIDIRNLKRCAEISRESR--AGGNTPFGALLADKEGNILLEQPNVEITENKCTGHAETQV 65

Query: 60  LEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            E+A      E  +  T Y T EPC+       CA  I   GI RVV  + + D
Sbjct: 66  AEKASQQYSKEFLKDCTLYTTAEPCAM------CAGAIYWAGIGRVVYGMSEKD 113


>gi|298293867|ref|YP_003695806.1| CMP/dCMP deaminase zinc-binding protein [Starkeya novella DSM 506]
 gi|296930378|gb|ADH91187.1| CMP/dCMP deaminase zinc-binding protein [Starkeya novella DSM 506]
          Length = 172

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 15/102 (14%)

Query: 30  SVACLIVKDGIVI-GRG---VTAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            V  ++V+ G  +   G           HAE+  +  A      +       YVTLEPC 
Sbjct: 43  PVGAVLVRGGTALAAEGNRMRELADPTAHAEMMVIRAAASVLGSDRLAECDLYVTLEPC- 101

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                  CA  I    +RR+     DP       G+++ SQ 
Sbjct: 102 -----TMCAGAISFARLRRIYYGAPDPKGGAVENGVRFFSQA 138


>gi|126176056|ref|YP_001052205.1| deaminase-reductase domain-containing protein [Shewanella baltica
           OS155]
 gi|125999261|gb|ABN63336.1| bifunctional deaminase-reductase domain protein [Shewanella baltica
           OS155]
          Length = 183

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 44/117 (37%), Gaps = 9/117 (7%)

Query: 235 KIIKTALLAPVI---IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
           K++      P +   +   +   V   +   +++ ++  D   + +    L  RG   L 
Sbjct: 58  KVLSFDCDWPYVNIPVFVLSRSGVTVPSALSEHVQVLNGDTASISE---QLKTRGFKHLY 114

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
           ++GG      F+ + L+  + L R   ++G  GIP    +       M +    + +
Sbjct: 115 IDGG-QTIQGFLAAGLIQELTLTRIPTLLG-KGIP-LFGDLAQALQLMPIHTQQYDN 168


>gi|302772701|ref|XP_002969768.1| hypothetical protein SELMODRAFT_6274 [Selaginella moellendorffii]
 gi|300162279|gb|EFJ28892.1| hypothetical protein SELMODRAFT_6274 [Selaginella moellendorffii]
          Length = 147

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 46/125 (36%), Gaps = 36/125 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
           S+D  FMS A   ++           V   +V +D +++G G                  
Sbjct: 3   SWDDYFMSIAFLSAQRSK---DPIRQVGACLVSQDYVILGIGYNGFPRGCSDDKLPWAKK 59

Query: 47  --------TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                   T Y    HAEV A L      A G   YVT+ PC+       CA+ II+ GI
Sbjct: 60  SRDGDLLKTKYPYVCHAEVNAILNRNHASASGQRLYVTMFPCNE------CAKVIIQAGI 113

Query: 98  RRVVV 102
             V+ 
Sbjct: 114 AEVIF 118


>gi|302823271|ref|XP_002993289.1| hypothetical protein SELMODRAFT_136875 [Selaginella moellendorffii]
 gi|300138862|gb|EFJ05614.1| hypothetical protein SELMODRAFT_136875 [Selaginella moellendorffii]
          Length = 192

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 46/125 (36%), Gaps = 36/125 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
           S+D  FMS A   ++           V   +V +D +++G G                  
Sbjct: 3   SWDDYFMSIAFLSAQRSK---DPIRQVGACLVSQDYVILGIGYNGFPRGCSDDKLPWAKK 59

Query: 47  --------TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                   T Y    HAEV A L      A G   YVT+ PC+       CA+ II+ GI
Sbjct: 60  SRDGDLLKTKYPYVCHAEVNAILNRNHASASGQRLYVTMFPCNE------CAKVIIQAGI 113

Query: 98  RRVVV 102
             V+ 
Sbjct: 114 AEVIF 118


>gi|325959127|ref|YP_004290593.1| bifunctional deaminase-reductase domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325330559|gb|ADZ09621.1| bifunctional deaminase-reductase domain protein [Methanobacterium
           sp. AL-21]
          Length = 174

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
            KK++  L  +   +L ++GG      F+   L+  +I+  + +++GEG    PL  G  
Sbjct: 93  PKKIVEELNSKEFNNLYIDGG-QTIQRFLKEDLIHEMIITTASVILGEG---IPLFNGIS 148

Query: 335 -EKNFMCVRRDYFGSDVCLEYIGKN 358
            +  F C R +     +   Y  ++
Sbjct: 149 GDIKFKCERVEVLNPYLVKHYYERD 173


>gi|330467920|ref|YP_004405663.1| bifunctional deaminase-reductase domain-containing protein
           [Verrucosispora maris AB-18-032]
 gi|328810891|gb|AEB45063.1| bifunctional deaminase-reductase domain-containing protein
           [Verrucosispora maris AB-18-032]
          Length = 197

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 63/215 (29%), Gaps = 47/215 (21%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV---------- 200
           +        +         G   +      ++V   RA++ ++ V   T+          
Sbjct: 7   YWMNVSVDLRIEYAPGEAGGGKWMRITEPLHRVFNERARAMSLAVEGRTIYETMESFWPA 66

Query: 201 -LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
              DD          +  + M  +L    +   D             I+  +D       
Sbjct: 67  ARHDDSLPDFLREYGEIWTSMPKVLVSRTRTHADHN---------TRIIGGDDAIEQLAK 117

Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
            R +   +I                         GGA VA   + +RL+D ++L+   +V
Sbjct: 118 LRAETDGVIGV-----------------------GGATVATQLLRARLLDEVLLFTHPVV 154

Query: 320 IGEGGIPSPLEEGYLEK-NFMCVRRDYFGSDVCLE 353
           +G G    PL + + E      + +  F   V + 
Sbjct: 155 LGSGR---PLFDAHDEPLELDLLEQASFDEGVTMH 186


>gi|254521581|ref|ZP_05133636.1| cytosine deaminase [Stenotrophomonas sp. SKA14]
 gi|219719172|gb|EED37697.1| cytosine deaminase [Stenotrophomonas sp. SKA14]
          Length = 150

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 19/143 (13%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG--GCP--HAEVQALEEAGEEAR 68
           A+  +R   GL      +   +   DG ++G G       G P  H E  A  +AG + R
Sbjct: 14  AIAEAR--QGLAEGGVPIGAALYHNDGRLLGCGHNRRVQEGDPSVHGETDAFRKAGRQRR 71

Query: 69  --GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
                   TL PC +      C+  + +  I  VVV     + R    G+ WL + G+ V
Sbjct: 72  YQDTIMVTTLAPCWY------CSGLVRQFNIGTVVVG----ESRTFQGGIAWLRENGVNV 121

Query: 127 DRMMESEGKIFLHAYLTRQVEKR 149
             +   E    L  ++ +  E  
Sbjct: 122 IDLDSQECVDLLGGFIAQHPEIW 144


>gi|294786275|ref|ZP_06751529.1| cytidine and deoxycytidylate deaminase family protein
           [Parascardovia denticolens F0305]
 gi|315225809|ref|ZP_07867597.1| cytidine and deoxycytidylate deaminase [Parascardovia denticolens
           DSM 10105]
 gi|294485108|gb|EFG32742.1| cytidine and deoxycytidylate deaminase family protein
           [Parascardovia denticolens F0305]
 gi|315119941|gb|EFT83073.1| cytidine and deoxycytidylate deaminase [Parascardovia denticolens
           DSM 10105]
          Length = 158

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 23/129 (17%)

Query: 30  SVACLIVK-DGIVIGRGVTAYGGCP----HAEVQALEEAGEEA------RGATAYVTLEP 78
            V  ++V   G V+ +             HAE++ + +AG  A       G T  VTLEP
Sbjct: 29  PVGAVLVDPQGKVLAQSGNGRQRGKGPLSHAEIE-VMQAGAAAWGSWNLEGCTLVVTLEP 87

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESE 133
           C      P CA   +   + R+V    D  +   G          I     +V  + E+E
Sbjct: 88  C------PMCAGAAVSAHLGRIVFGAWDQKMGACGSVWDIPRDPHIGFQPEVVGGVGEAE 141

Query: 134 GKIFLHAYL 142
            +  L  + 
Sbjct: 142 CQSLLTNFF 150


>gi|296501407|ref|YP_003663107.1| pyrimidine reductase [Bacillus thuringiensis BMB171]
 gi|296322459|gb|ADH05387.1| pyrimidine reductase [Bacillus thuringiensis BMB171]
          Length = 173

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D+ +    L  +  + + + GG  +   F  + L+D  ++  +  ++G  G+P   ++
Sbjct: 90  NEDVVEFTKRLKAKEGSKIWMVGGGELLREFFKNNLIDEYVVTITPHILGS-GVP-LFQD 147

Query: 332 GYLEKNFMCVRRDYFGSDVCLEY 354
              E N        FG  V L Y
Sbjct: 148 KNPEINLTLTDTKRFGQFVNLYY 170


>gi|229148987|ref|ZP_04277232.1| Enzyme [Bacillus cereus m1550]
 gi|228634527|gb|EEK91111.1| Enzyme [Bacillus cereus m1550]
          Length = 179

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D+ +    L  +  + + + GG  +   F  + L+D  ++  +  ++G  G+P   ++
Sbjct: 96  NEDVVEFTKRLKAKEGSKIWMVGGGELLREFFKNNLIDEYVVTITPHILGS-GVP-LFQD 153

Query: 332 GYLEKNFMCVRRDYFGSDVCLEY 354
              E N        FG  V L Y
Sbjct: 154 KNPEINLTLTDTKRFGQFVNLYY 176


>gi|121594381|ref|YP_986277.1| deaminase-reductase domain-containing protein [Acidovorax sp. JS42]
 gi|120606461|gb|ABM42201.1| bifunctional deaminase-reductase domain protein [Acidovorax sp.
           JS42]
          Length = 193

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P  + +    P          I  +  D R +   + +    G  +L V GG  +A  F 
Sbjct: 76  PAWVFSSRRLP----GIDGAGIRFVQGDVRPVHAAMRLAA--GTKNLWVVGGGDLAGQFY 129

Query: 304 NSRLVDSIILYRSQIVIGEG 323
           ++ L+D +IL    I +G G
Sbjct: 130 DAGLLDELILQVGSITLGRG 149


>gi|39996672|ref|NP_952623.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Geobacter sulfurreducens PCA]
 gi|39983553|gb|AAR34946.1| ribD domain protein [Geobacter sulfurreducens PCA]
 gi|298505684|gb|ADI84407.1| RibD_C domain protein [Geobacter sulfurreducens KN400]
          Length = 175

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
              +L  L+  G     + GG  +A SF+  RL+   I+    +++G GGIP  +    +
Sbjct: 92  PDDVLHSLLRNGCRRAWLVGGGVLAASFLQRRLISEYIVSIVPVILG-GGIPM-ISPNRI 149

Query: 335 EKNFMCVRRDYF-GSDVCLEYIGK 357
            ++   +      G  V + Y  +
Sbjct: 150 RESLTLLETKVCTGGIVQVRYRSE 173


>gi|310640032|ref|YP_003944790.1| bifunctional deaminase-reductase domain protein [Paenibacillus
           polymyxa SC2]
 gi|309244982|gb|ADO54549.1| Bifunctional deaminase-reductase domain protein [Paenibacillus
           polymyxa SC2]
          Length = 179

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 3/99 (3%)

Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
            +L  +++  ++ + D   L +L+  L  +    + + GG  +  +F+ + L++  I+  
Sbjct: 82  RSLTEQQQAPHVTFTDEA-LSELVPRLQKQSEGLVWLVGGGQLVQAFMQAGLLEKAIIAI 140

Query: 316 SQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
              V+G+ GIP    EG L   F     +  G  V L Y
Sbjct: 141 IPKVLGQ-GIP-LFPEGTLPSTFQLQEIERRGDIVLLHY 177


>gi|206967533|ref|ZP_03228489.1| dihydrofolate reductase family protein [Bacillus cereus AH1134]
 gi|229068334|ref|ZP_04201637.1| Enzyme [Bacillus cereus F65185]
 gi|206736453|gb|EDZ53600.1| dihydrofolate reductase family protein [Bacillus cereus AH1134]
 gi|228714795|gb|EEL66667.1| Enzyme [Bacillus cereus F65185]
          Length = 173

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             +     D+ +    L  +  + + + GG ++   F  + L+D  ++  +  ++G  G+
Sbjct: 84  EHVEFVNEDVVEFTKRLKAQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GV 142

Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           P   ++   E N        FG  V L Y
Sbjct: 143 P-LFQDKNPEINLTLTDTKRFGQFVNLYY 170


>gi|99081767|ref|YP_613921.1| CMP/dCMP deaminase, zinc-binding [Ruegeria sp. TM1040]
 gi|99038047|gb|ABF64659.1| CMP/dCMP deaminase zinc-binding [Ruegeria sp. TM1040]
          Length = 144

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 43/128 (33%), Gaps = 21/128 (16%)

Query: 30  SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
            V  ++V  +G V+ R             HAEV A+  A      E   G   YVTLEPC
Sbjct: 18  PVGAVLVSPEGKVVARAGNRTRELNDPTAHAEVLAIRAACAALGSERLLGHDLYVTLEPC 77

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL-----SQKGIIVDRMMESEG 134
           +       CA  I    I RV     DP       G              + +    ++ 
Sbjct: 78  AM------CAAAIAAARIARVYYGASDPKSGGVAHGACVFDHPQSHHAPEVYEGFSAAQS 131

Query: 135 KIFLHAYL 142
           +  L A+ 
Sbjct: 132 EALLRAFF 139


>gi|29829786|ref|NP_824420.1| hypothetical protein SAV_3244 [Streptomyces avermitilis MA-4680]
 gi|29606895|dbj|BAC70955.1| putative bifunctional deaminase-reductase-like protein
           [Streptomyces avermitilis MA-4680]
          Length = 215

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV-CL 352
           GGA +A  F+   LVD   +Y   +++G G    P  +              FG+ V  L
Sbjct: 124 GGADLAAEFMRHDLVDEYRVYVHPVLLGRGKRLFPETDTLTP--LRLTESRTFGNGVALL 181

Query: 353 EYIG 356
            Y  
Sbjct: 182 RYER 185


>gi|294791140|ref|ZP_06756297.1| tRNA(Ile)-lysidine synthase [Scardovia inopinata F0304]
 gi|294457611|gb|EFG25965.1| tRNA(Ile)-lysidine synthase [Scardovia inopinata F0304]
          Length = 152

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 48/147 (32%), Gaps = 23/147 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIG--RGVTAYGGCP--HAEVQALEEA-- 63
           M  AL  +R           V  +++  +G V+   R        P  HAE++ + EA  
Sbjct: 9   MGVALENARKSADFDE--IPVGAVVLNSEGAVLAAERNHREEKADPFSHAEIEVMREAAR 66

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                     T  VT+EPC      P CA  I+   + RVV    D  +   G       
Sbjct: 67  VRESWNFEDCTLVVTMEPC------PMCAGAIVSAHMGRVVFGAWDEKMGALGSVWDIAR 120

Query: 121 QKGI-----IVDRMMESEGKIFLHAYL 142
              +     +   +   E    L  + 
Sbjct: 121 DPHVGFRPEVFGGVRADECAEILREFF 147


>gi|217958235|ref|YP_002336781.1| riboflavin biosynthesis protein RibD C- domain protein [Bacillus
           cereus AH187]
 gi|217063241|gb|ACJ77491.1| riboflavin biosynthesis protein RibD C- domain protein [Bacillus
           cereus AH187]
          Length = 174

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             +     D+ +    L  +  + + + GG ++   F  + L+D  ++  +  ++G  G+
Sbjct: 84  EHVEFVNEDVVEFTKRLKEQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GV 142

Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           P   ++   E +        FG  V L Y
Sbjct: 143 P-LFQDKNPEIHLTLTYTKRFGQFVNLYY 170


>gi|229000669|ref|ZP_04160193.1| hypothetical protein bmyco0003_51920 [Bacillus mycoides Rock3-17]
 gi|228759077|gb|EEM08099.1| hypothetical protein bmyco0003_51920 [Bacillus mycoides Rock3-17]
          Length = 189

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 3/105 (2%)

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           ++   +  V +   +  +   I+ +   L+ +   L  +    + + GGA++  +FIN  
Sbjct: 79  LIHSKEKYVFSRTQKGSDNKAIFINDNILEDV-NKLKKKSGKDIWLYGGASLITTFINLG 137

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           LVD   L    +++GEG       +     N   V    F S V 
Sbjct: 138 LVDEFRLSVHPVILGEG--KPLFIDIKQRLNLKMVNTRTFSSGVV 180


>gi|118476335|ref|YP_893486.1| dihydrofolate reductase family protein [Bacillus thuringiensis str.
           Al Hakam]
 gi|118415560|gb|ABK83979.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
           Hakam]
          Length = 179

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D+ + +  L  +  + + + GG ++   F  + L+D  ++  +  ++G  G+P   ++
Sbjct: 96  NEDVVEFIKRLKAQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVP-LFQD 153

Query: 332 GYLEKNFMCVRRDYFGSDVCLEY 354
              E +        FG  V L Y
Sbjct: 154 KNPEIHLTLTDTKRFGQFVNLYY 176


>gi|292494136|ref|YP_003533279.1| Cytidine/deoxycytidylate deaminase, zinc-binding region (TBD)
           [Haloferax volcanii DS2]
 gi|291369169|gb|ADE01399.1| Cytidine/deoxycytidylate deaminase, zinc-binding region (TBD)
           [Haloferax volcanii DS2]
          Length = 153

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 42/126 (33%), Gaps = 17/126 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI----GRGVTAYGGCPHAEVQ----A 59
            R M  +   +R              ++V+D  VI     R VT      H E+Q    A
Sbjct: 11  ERHMRESFELARKAAARGDE--PFGSVLVRDDEVIMRDSNRIVTESDIRRHPELQLAYRA 68

Query: 60  LEEAGEEARGA-TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
             E   + R A   Y + EPC      P CA  +   G  RVV  V   ++         
Sbjct: 69  CREYDADERAAMVMYTSTEPC------PMCAGGMATAGFARVVYGVGGDEIGEFTGSNPG 122

Query: 119 LSQKGI 124
           +    +
Sbjct: 123 VRSAAV 128


>gi|290993580|ref|XP_002679411.1| purine deaminase [Naegleria gruberi]
 gi|284093027|gb|EFC46667.1| purine deaminase [Naegleria gruberi]
          Length = 203

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 35/108 (32%), Gaps = 18/108 (16%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRG----VTAYGGCPHAEVQALE 61
            + M  A+  S+        N     L++ +    +I        T      HAE+    
Sbjct: 43  EKLMKRAIDLSKESCND-HGNHPFGALLIDNDTNEIILEAHNTVHTENDRTRHAELNLSS 101

Query: 62  EAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
            A ++         T Y + EPC        CA  I   GI +VV   
Sbjct: 102 MASKKYPRDYLTNCTMYTSTEPCIM------CAGAIFWVGIGKVVYAC 143


>gi|116250073|ref|YP_765911.1| hypothetical protein RL0305 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115254721|emb|CAK05795.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 176

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 6/86 (6%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             DL   +  L       + V  G  +A S     L+D   +Y   +V+G G    P   
Sbjct: 95  EEDLAAAIRELKAERDGEIEV-AGPNLAQSLTELGLIDEYRIYLHPVVLGHGK---PYFA 150

Query: 332 GYLEKNFMCVRRDYFGSDVC-LEYIG 356
           G        +  D  G DV  L Y+ 
Sbjct: 151 G-PRPPLRLMAHDRIGEDVIRLTYVP 175


>gi|163938572|ref|YP_001643456.1| deaminase-reductase domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|163860769|gb|ABY41828.1| bifunctional deaminase-reductase domain protein [Bacillus
           weihenstephanensis KBAB4]
          Length = 174

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 2/93 (2%)

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             +     D+ +    L  +  + + + GG ++   F  + L+D  ++  +  ++G  G+
Sbjct: 84  EHVEFVNEDVLEFTKRLKEQEGSKIWMVGGGSLLKGFFKNNLIDEYVVTITPHILGS-GV 142

Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           P   +E   E N        FG  V L Y  K+
Sbjct: 143 P-LFKEKNPEINLTLTDTKRFGQFVNLYYKVKS 174


>gi|218246093|ref|YP_002371464.1| CMP/dCMP deaminase [Cyanothece sp. PCC 8801]
 gi|218166571|gb|ACK65308.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 8801]
          Length = 179

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 43/128 (33%), Gaps = 39/128 (30%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCPHAEVQ----- 58
           ++D  F+  A + +      T     V  +IVKD  V+  G      G  H   Q     
Sbjct: 10  TWDEYFLMIA-KLA--ATRSTCLAFPVGAVIVKDRQVLATGYNGSPSGSVHCTAQGFCYP 66

Query: 59  --------------ALE----------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                         A+           + G    GA  YVTLEPC        C + +I 
Sbjct: 67  ELSSCAASSSLPSRAVHAEANAIAQAAKHGISTEGAMIYVTLEPCI------SCLKLVIS 120

Query: 95  CGIRRVVV 102
            GI++V  
Sbjct: 121 AGIKQVFY 128


>gi|262199289|ref|YP_003270498.1| hypothetical protein Hoch_6130 [Haliangium ochraceum DSM 14365]
 gi|262082636|gb|ACY18605.1| hypothetical protein Hoch_6130 [Haliangium ochraceum DSM 14365]
          Length = 274

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 45/109 (41%), Gaps = 11/109 (10%)

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
           R +  +   P+ ++L    +L L   +++ A     ++ T +     A A     +  + 
Sbjct: 111 REHLGKRTRPVSLVLSRGARLPLAHPLLRAADA---VVFTGHAG---ARALADAGLCAVA 164

Query: 270 CDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFI----NSRLVDSIIL 313
            D   L   L  L   RG  ++LVE GA+   +      ++  +D ++L
Sbjct: 165 ADAPGLTAALAYLREQRGCATILVEAGASTTRALYAPGEDAGPLDELLL 213


>gi|116670608|ref|YP_831541.1| deaminase-reductase domain-containing protein [Arthrobacter sp.
           FB24]
 gi|116610717|gb|ABK03441.1| bifunctional deaminase-reductase domain protein [Arthrobacter sp.
           FB24]
          Length = 180

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 6/92 (6%)

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
              P  + T ++      A R  ++  +  D ++           G  ++ + GG  +A 
Sbjct: 70  PDTPCWVFTHHEHS----APRGADVTFVRGDVQEFMDDFR--ADAGGKNVWLVGGGELAA 123

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
            F ++ L+D II+    +V+G G    P++ G
Sbjct: 124 QFADAGLLDEIIVSIIPVVLGAGKPVLPVKTG 155


>gi|158315851|ref|YP_001508359.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EAN1pec]
 gi|158111256|gb|ABW13453.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EAN1pec]
          Length = 212

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 39/115 (33%), Gaps = 19/115 (16%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------HA 55
            ++ D  +   AL  +            V  ++    G +IG G              HA
Sbjct: 15  WAALDTPW-HKALEMAWESYLAGGVG--VGAILTDSGGRIIGYGRNQRFASASPRLLAHA 71

Query: 56  EVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           E++AL       + A  A  Y TL PC      P C   ++   I +V     DP
Sbjct: 72  EMEALAALPPGKDRAHDAVLYTTLHPC------PMCLGAVVVARIGQVRFGAFDP 120


>gi|296812509|ref|XP_002846592.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
 gi|238841848|gb|EEQ31510.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
          Length = 233

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 54/167 (32%), Gaps = 44/167 (26%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV------KDG-----IVIGRGVT-A 48
           M   S    ++S  L  +        TN  V  +++       D       ++  G T  
Sbjct: 6   MVPLSTHLHYLSQCLELASQSPPK-PTNFRVGAILLLRRYPTSDDAELKEEILSTGYTLE 64

Query: 49  YGGCPHAEVQALE-----------EAGEEAR------GATA----YVTLEPCS-HYGRSP 86
             G  HAE                + GE         G  A    YVT+EPC      + 
Sbjct: 65  LRGNTHAEQCCFAKFASHHGVPEEQVGELLEKKRAEEGGEAQIELYVTMEPCGKRLSENK 124

Query: 87  PCAQFIIEC--------GIRRVVVCVDDPDVRVSGRG-LQWLSQKGI 124
           PC + IIE         GI RV   V +P   V      + L + GI
Sbjct: 125 PCVERIIETKSQQDGKGGIDRVYFGVKEPGTFVGQSQGCRKLDEAGI 171


>gi|218659157|ref|ZP_03515087.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
           [Rhizobium etli IE4771]
          Length = 164

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLL 279
           +I+D    L  D   I+ A L  +++   + D        +  ++ I    D  DLK  L
Sbjct: 81  VIVDKDGWLRWDKNDIEDAQL--IVLTGSDVDDAYLAGLAQAGVSYIVSEKDGVDLKNAL 138

Query: 280 TILV-GRGVTSLLVEGGAAVAHSFIN 304
            +L    GV  L++EGGA     F+N
Sbjct: 139 DVLGTEFGVKRLMLEGGAQTNGHFLN 164


>gi|225019182|ref|ZP_03708374.1| hypothetical protein CLOSTMETH_03134 [Clostridium methylpentosum
           DSM 5476]
 gi|224948034|gb|EEG29243.1| hypothetical protein CLOSTMETH_03134 [Clostridium methylpentosum
           DSM 5476]
          Length = 155

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 49/134 (36%), Gaps = 38/134 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIV---------------------- 41
           + D  +M+ A +++  H         V  ++V  DG V                      
Sbjct: 8   NMDQEYMAQAYQYAEEHSRCLRR--KVGAVLVSCDGEVLRSTNLPVPDPQQCIQEDCLRD 65

Query: 42  ---IGRGVTAY-GGCPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
              I  G  +    C HAE+  L      G  +  AT Y TL PC      P CA+ ++ 
Sbjct: 66  LNGIASGQHSDLCRCIHAEIDLLIQCARKGISSDRATVYCTLSPC------PNCARALLR 119

Query: 95  CGIRRVVVCVDDPD 108
            GI R+V C +  +
Sbjct: 120 SGIARLVFCEEYSN 133


>gi|299143279|ref|ZP_07036359.1| cytidine/deoxycytidylate deaminase family protein [Peptoniphilus
           sp. oral taxon 386 str. F0131]
 gi|298517764|gb|EFI41503.1| cytidine/deoxycytidylate deaminase family protein [Peptoniphilus
           sp. oral taxon 386 str. F0131]
          Length = 143

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 29/95 (30%)

Query: 31  VACLIV-KDGIVIGRGVTAY-GGCP------------------HAEVQAL---EEAGEEA 67
           V C+IV KD  ++  G      G P                  HAE+ AL    + G   
Sbjct: 27  VGCVIVNKDHRIVSTGYNGSLAGNPQCDEIGHTMRDGHCIATIHAEMNALLYCAKEGIPV 86

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           +   AYVT  PC +      C + +I+ GI+ +  
Sbjct: 87  KDCVAYVTHFPCLN------CTKSLIQAGIKAIYY 115


>gi|293377500|ref|ZP_06623696.1| ComE operon protein 2 [Enterococcus faecium PC4.1]
 gi|292643869|gb|EFF61983.1| ComE operon protein 2 [Enterococcus faecium PC4.1]
          Length = 148

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 48/141 (34%), Gaps = 34/141 (24%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------------- 53
           M+ A+  S            V   +V++  +I  G                         
Sbjct: 1   MAQAVLLSLRSTCTRLE---VGATLVREKRIIAGGYNGAVSGDVHCIDEGCYIVDGHCLR 57

Query: 54  --HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
             HAE+ AL +    G    G+  YVT  PC        C + +++ G++ +    D  +
Sbjct: 58  TIHAEMNALLQCAKLGIPTEGSEIYVTHFPCL------ACTKALLQAGVKGINYLHDYRN 111

Query: 109 VRVSGRGLQWLSQKGIIVDRM 129
              +   ++ L   GI V ++
Sbjct: 112 DPYAQALIEQL---GISVHQV 129


>gi|188990100|ref|YP_001902110.1| cytosine deaminase [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167731860|emb|CAP50044.1| cytosine deaminase [Xanthomonas campestris pv. campestris]
          Length = 151

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 50/143 (34%), Gaps = 19/143 (13%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR 68
           A+  +R   GL      +   +   DG ++G G            H E  A  +AG + R
Sbjct: 14  AIAEAR--QGLAEGGIPIGAALYHSDGRLLGCGHNRRVQENDPSVHGETDAFRKAGRQRR 71

Query: 69  --GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
                   TL PC +      C+  + +  I  VVV     +      G+ WL + G+ V
Sbjct: 72  YQDTIMVTTLAPCWY------CSGLVRQFNIGTVVVG----ESVTFQGGIDWLREHGVTV 121

Query: 127 DRMMESEGKIFLHAYLTRQVEKR 149
             M   E    L  Y+    +  
Sbjct: 122 IDMQSQECMDLLGGYIAANPDVW 144


>gi|307324928|ref|ZP_07604133.1| bifunctional deaminase-reductase domain protein [Streptomyces
           violaceusniger Tu 4113]
 gi|306889426|gb|EFN20407.1| bifunctional deaminase-reductase domain protein [Streptomyces
           violaceusniger Tu 4113]
          Length = 204

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 23/120 (19%)

Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
           P  I++        +S  ++   L    + T   D V   A R++         +DL   
Sbjct: 89  PAFIVVTSS---PPES--VRLTDLDWTFVTTGLPDAV--NAARERAEAASSESGKDLDAF 141

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
           L              GG A   S + + LVD + L+ + +V+G G   +PL  G   +  
Sbjct: 142 LM-------------GGGATIRSALAAGLVDELTLHLAPVVLGTG---TPLFTGGAPRTL 185


>gi|159123539|gb|EDP48658.1| dihydrofolate reductase family protein [Aspergillus fumigatus
           A1163]
          Length = 194

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 13/113 (11%)

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
              P  +++ +  P    A++ K+I +      D  K +      G   + V+GG  V  
Sbjct: 80  AKKPTFVLSRSMAPG---AYKAKDIEVEVVGSLDEAKDVFERERLGC--VYVDGG-EVVT 133

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
            F+    VD +++  + +++G G        G LE++   VR    G DV  E
Sbjct: 134 EFLRRGWVDEMVVTTAPVLLGNGIR----LFGGLEED---VRFTLVGVDVIEE 179


>gi|120610819|ref|YP_970497.1| deaminase-reductase domain-containing protein [Acidovorax citrulli
           AAC00-1]
 gi|120589283|gb|ABM32723.1| bifunctional deaminase-reductase domain protein [Acidovorax
           citrulli AAC00-1]
          Length = 180

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 10/83 (12%)

Query: 244 PVIIVTEN--DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
           PV++++    D PV      K     +       ++ +  L  +GV  + V+GG  V  S
Sbjct: 71  PVVVLSRQLVDAPVPEALKDK-----VRFSSWPPEEAMQELAHQGVQRVYVDGG-QVVQS 124

Query: 302 FINSRLV-DSIILYRSQIVIGEG 323
           F+   L+ D +I     ++IG G
Sbjct: 125 FLRDGLIADMVITTV-PVLIGSG 146


>gi|30018833|ref|NP_830464.1| pyrimidine reductase [Bacillus cereus ATCC 14579]
 gi|229042511|ref|ZP_04190256.1| Enzyme [Bacillus cereus AH676]
 gi|229126081|ref|ZP_04255103.1| Enzyme [Bacillus cereus BDRD-Cer4]
 gi|29894375|gb|AAP07665.1| Pyrimidine Reductase [Bacillus cereus ATCC 14579]
 gi|228657403|gb|EEL13219.1| Enzyme [Bacillus cereus BDRD-Cer4]
 gi|228726864|gb|EEL78076.1| Enzyme [Bacillus cereus AH676]
          Length = 173

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D+ +    L  +  + + + GG  +   F  + L+D  ++  +  ++G  G+P   ++
Sbjct: 90  NEDVVEFTKRLKAQEGSKIWMVGGGELLREFFKNNLIDEYVVTITPHILGS-GVP-LFQD 147

Query: 332 GYLEKNFMCVRRDYFGSDVCLEY 354
              E N        FG  V L Y
Sbjct: 148 KNPEINLTLTDTKRFGQFVNLYY 170


>gi|114609581|ref|XP_001172262.1| PREDICTED: hypothetical protein LOC463037 isoform 1 [Pan
           troglodytes]
 gi|31874632|emb|CAD98054.1| hypothetical protein [Homo sapiens]
 gi|119568253|gb|EAW47868.1| deaminase domain containing 1, isoform CRA_b [Homo sapiens]
 gi|193785142|dbj|BAG54295.1| unnamed protein product [Homo sapiens]
          Length = 144

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 21/98 (21%)

Query: 36  VKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEARGA-----------TAYVTLEPCS 80
           V +  V+G+G            HAE+ A+++  +  R +             YVT+EPC 
Sbjct: 2   VYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSPSEVFEHTVLYVTVEPCI 61

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                  CA  +    I  VV    +      G  L  
Sbjct: 62  M------CAAALRLMKIPLVVYGCQNERFGGCGSVLNI 93


>gi|114567897|ref|YP_755051.1| ComE operon protein 2 [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338832|gb|ABI69680.1| putative ComE operon protein 2 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 156

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 52/161 (32%), Gaps = 43/161 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------A 48
            +D  F+  A   +     L      V  ++VK+  +I  G                   
Sbjct: 7   DWDEYFLQLADLVATRSTCLRR---QVGAVLVKNERIISTGYNGAPRGLEHCLDIGCLRE 63

Query: 49  YGGCP-----------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
             G P           HAE  AL  A   G     A  Y T +PC        CA+ II 
Sbjct: 64  EQGIPSGHRYELCRGVHAEQNALINAAYYGISTAEAVIYCTNQPCII------CARMIIN 117

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135
            GI R+V   +  D       +++L + GI +  +      
Sbjct: 118 AGIIRIVHRGNFDD----DLAIKFLKEAGIELVLIPRQANH 154


>gi|312130588|ref|YP_003997928.1| bifunctional deaminase-reductase domain protein [Leadbetterella
           byssophila DSM 17132]
 gi|311907134|gb|ADQ17575.1| bifunctional deaminase-reductase domain protein [Leadbetterella
           byssophila DSM 17132]
          Length = 176

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           DL  L+  L  +G  ++  +GG  V  + +   L+D +I+    + +G G      + G+
Sbjct: 94  DLVDLVNKLKAQG-RNIYCDGGGQVIRTLLEHHLIDEMIISIVPVTLGSGVR--LFQAGF 150

Query: 334 LEKNFMCVRRDYFG 347
            E  +       + 
Sbjct: 151 PEAKWSLHEVKAYD 164


>gi|307174184|gb|EFN64829.1| Deoxycytidylate deaminase [Camponotus floridanus]
          Length = 168

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 53/166 (31%), Gaps = 37/166 (22%)

Query: 11  MSAALRFSRWHV-GLTSTNPSVACLIVKDG-IVIGRGVTAYG------------GCP--- 53
           M+ A   ++      T     V   IV +   ++G G                 G     
Sbjct: 1   MAIAFLSAKRSKDPCTQ----VGACIVNNDKRIVGIGYNGMPMGCDDDKFPWGKGSHNRD 56

Query: 54  ---------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                    HAE+ A L +   + +  T YV L PC+       CA+ +I+ GI+ ++  
Sbjct: 57  LDTKYLYVCHAEINAVLNKNSSDVKDCTMYVGLFPCNE------CAKVVIQSGIKTIIYM 110

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            D    +V     + +     I  R    + +     +      + 
Sbjct: 111 SDKNGHKVETIAAKKMFDAAGIKYRQYIPKNQKIEINFSDINWNQM 156


>gi|156087547|ref|XP_001611180.1| cytosine deaminase [Babesia bovis T2Bo]
 gi|154798434|gb|EDO07612.1| cytosine deaminase, putative [Babesia bovis]
          Length = 191

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 46/137 (33%), Gaps = 31/137 (22%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGI--VIGRGVT----AYGGCPHAEVQAL--- 60
           FM+AAL  +R    L     +V C+IV      ++ R        +    H E  A+   
Sbjct: 10  FMTAALDEARDA--LERGEVAVGCVIVDKEKKTIVARAGNSTNQKHNSTWHCEFGAIDTL 67

Query: 61  ------------EEAGEEARGA--TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
                       ++A  +A  +    +VT EPC        CA  +   G+  +    D+
Sbjct: 68  FSLVPDGKIGANDQANIQAFTSRYALFVTCEPCIM------CATALHIVGLTDIYYGCDN 121

Query: 107 PDVRVSGRGLQWLSQKG 123
                 G  L      G
Sbjct: 122 EKFGGCGSVLSLHEGYG 138


>gi|42779795|ref|NP_977042.1| dihydrofolate reductase family protein [Bacillus cereus ATCC 10987]
 gi|42735712|gb|AAS39650.1| dihydrofolate reductase family protein [Bacillus cereus ATCC 10987]
          Length = 173

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             +     D+ +    L  +  + + + GG ++   F  + L+D  ++  +  ++G  G+
Sbjct: 84  EYVEFVSEDVVEFTKRLKEQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GV 142

Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           P   ++   E +        FG  V L Y
Sbjct: 143 P-LFQDKNPEIHLTLTDTKRFGQFVNLYY 170


>gi|282855760|ref|ZP_06265066.1| conserved hypothetical protein [Pyramidobacter piscolens W5455]
 gi|282586392|gb|EFB91654.1| conserved hypothetical protein [Pyramidobacter piscolens W5455]
          Length = 230

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 40/112 (35%), Gaps = 11/112 (9%)

Query: 222 IILDPHFKLSLDSKIIKTALLA-PVI-IVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279
           +  D   KL   + ++  A    P++  VTE   P          I  I     DL    
Sbjct: 87  VAFDRWGKLRWKNNVMDCAGRRMPIVEAVTEKCAPEFLAYLNDLQIPYIVAGRDDLDL-- 144

Query: 280 TILVGRGVTSLL-VE-----GGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             L  + + SL  VE     GG+ +   FI   L D I +  +  V G  G 
Sbjct: 145 -ELFLQKIKSLCGVETFVIGGGSQINGEFIRRGLADEISIVVAPAVDGTRGA 195


>gi|301052301|ref|YP_003790512.1| putative dihydrofolate reductase family protein [Bacillus anthracis
           CI]
 gi|300374470|gb|ADK03374.1| possible dihydrofolate reductase family protein [Bacillus cereus
           biovar anthracis str. CI]
          Length = 173

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             +     D+ +    L  +  + + + GG ++   F  + L+D  ++  +  ++G  G+
Sbjct: 84  EHVEFVNEDVVEFTKRLKEQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GV 142

Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           P   ++   E +        FG  V L Y
Sbjct: 143 P-LFQDKNPEIHLTLTDTKRFGQFVNLYY 170


>gi|229194967|ref|ZP_04321748.1| Enzyme [Bacillus cereus m1293]
 gi|228588535|gb|EEK46572.1| Enzyme [Bacillus cereus m1293]
          Length = 179

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             +     D+ +    L  +  + + + GG ++   F  + L+D  ++  +  ++G  G+
Sbjct: 90  EHVEFVNEDVVEFTKRLKEQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GV 148

Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           P   ++   E +        FG  V L Y
Sbjct: 149 P-LFQDKNPEIHLTLTDTKRFGQFVNLYY 176


>gi|222094403|ref|YP_002528462.1| dihydrofolate reductase family protein [Bacillus cereus Q1]
 gi|221238460|gb|ACM11170.1| dihydrofolate reductase family protein [Bacillus cereus Q1]
          Length = 173

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             +     D+ +    L  +  + + + GG ++   F  + L+D  ++  +  ++G  G+
Sbjct: 84  EHVEFVNEDVVEFTKRLKEQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GV 142

Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           P   ++   E +        FG  V L Y
Sbjct: 143 P-LFQDKNPEIHLTLTDTKRFGQFVNLYY 170


>gi|242278132|ref|YP_002990261.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio salexigens DSM 2638]
 gi|242121026|gb|ACS78722.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio salexigens DSM 2638]
          Length = 151

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 44/159 (27%), Gaps = 46/159 (28%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
           MP       FM  A   +      T T   V  + V D  ++  G               
Sbjct: 5   MPWPD---YFMRIAHLVAERA---TCTRRKVGAVAVLDKRILASGYNGPPSGTAHCADVG 58

Query: 47  -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE   + +    G   +GA  Y T +PC        C +
Sbjct: 59  CIREKMGVPSGERHELCRGLHAEQNVIIQCATHGVSMKGAEIYCTTQPCLI------CTK 112

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
            +I  G+  +      PD        Q L + G+    +
Sbjct: 113 MLINAGVSAIYYSESYPDELSE----QMLKEAGVKFAFL 147


>gi|206978382|ref|ZP_03239254.1| dihydrofolate reductase family protein [Bacillus cereus H3081.97]
 gi|206743416|gb|EDZ54851.1| dihydrofolate reductase family protein [Bacillus cereus H3081.97]
          Length = 173

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             +     D+ +    L  +  + + + GG ++   F  + L+D  ++  +  ++G  G+
Sbjct: 84  EHVEFVNEDVVEFTKRLKEQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GV 142

Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           P   ++   E +        FG  V L Y
Sbjct: 143 P-LFQDKNPEIHLTLTDTKRFGQFVNLYY 170


>gi|296107600|ref|YP_003619301.1| dihydrofolate reductase [Legionella pneumophila 2300/99 Alcoy]
 gi|295649502|gb|ADG25349.1| dihydrofolate reductase [Legionella pneumophila 2300/99 Alcoy]
          Length = 181

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           PVI+++        +   +   +II    +    L++ L  +G+  + ++GG  +   F+
Sbjct: 74  PVIVMSS-----KPIQIPEHLQHIITVSNQSPPDLVSELSLQGIQHVYLDGGITIQG-FL 127

Query: 304 NSRLVDSIILYRSQIVIGEG 323
            + LV+ + +    ++I  G
Sbjct: 128 QNNLVNEMTITVIPVLIDSG 147


>gi|311742889|ref|ZP_07716697.1| riboflavin biosynthesis protein RibD domain protein [Aeromicrobium
           marinum DSM 15272]
 gi|311313569|gb|EFQ83478.1| riboflavin biosynthesis protein RibD domain protein [Aeromicrobium
           marinum DSM 15272]
          Length = 185

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
           +LV GG  +A   + + LVD I L+   +V+G      P            +    F
Sbjct: 121 VLV-GGPHLAAQALEAGLVDEIELFVWPVVLGGRN---PALPAGWSAELDLLEHQRF 173


>gi|152998999|ref|YP_001364680.1| deaminase-reductase domain-containing protein [Shewanella baltica
           OS185]
 gi|151363617|gb|ABS06617.1| bifunctional deaminase-reductase domain protein [Shewanella baltica
           OS185]
          Length = 183

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 44/117 (37%), Gaps = 9/117 (7%)

Query: 235 KIIKTALLAPVI---IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
           K++      P +   +   +   V   +   +++ ++  D   + +    L  RG   L 
Sbjct: 58  KVLSFDCDWPYVNIPVFVLSRSGVTVPSALSEHVQVLNGDAASISE---QLKTRGFKHLY 114

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
           ++GG      F+ + L+  + L R   ++G  GIP    +       M +    + +
Sbjct: 115 IDGG-QTIQGFLAAGLIQELTLTRIPTLLG-KGIP-LFGDLAQAIQLMPIHTQQYDN 168


>gi|21232920|ref|NP_638837.1| cytosine deaminase [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66767007|ref|YP_241769.1| cytosine deaminase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|21114755|gb|AAM42761.1| cytosine deaminase [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66572339|gb|AAY47749.1| cytosine deaminase [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 151

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 19/143 (13%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR 68
           A+  +R   GL      +   +   DG ++G G            H E  A  +AG + R
Sbjct: 14  AIAEAR--QGLAEGGIPIGAALYHSDGRLLGCGHNRRVQENDPSVHGETDAFRKAGRQRR 71

Query: 69  --GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
                   TL PC +      C+  + +  I  VVV     +      G+ WL + G+ V
Sbjct: 72  YQDTIMVTTLAPCWY------CSGLVRQFNIGTVVVG----ESVTFQGGIDWLREHGVNV 121

Query: 127 DRMMESEGKIFLHAYLTRQVEKR 149
             +   E    L  Y+    +  
Sbjct: 122 IDLHSQECMDLLGGYIAANPDVW 144


>gi|302527561|ref|ZP_07279903.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sp. AA4]
 gi|302436456|gb|EFL08272.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sp. AA4]
          Length = 178

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 57/184 (30%), Gaps = 38/184 (20%)

Query: 154 LKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213
              A+S D  I   G     +  +        L A+  A+LVG  T   DDP        
Sbjct: 11  YSAAMSLDGFIAGPGGDMGWLAPYTGDASADELAAEVGALLVGRRTFSGDDPY------- 63

Query: 214 LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR 273
                              + K        P I++T    P +        +        
Sbjct: 64  --------------RGTENEGKAFGGLWDGPQIVLTRGVAPAVP------GVTFCASLEE 103

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIP 326
            +         + V  +L   GA+V  + + + L+D + +    +++G G       G P
Sbjct: 104 GVAAARAAAGEKTVN-VL---GASVGRACVEAGLLDEVEVMVMPVLLGGGVRLFERPGPP 159

Query: 327 SPLE 330
            PLE
Sbjct: 160 VPLE 163


>gi|154253639|ref|YP_001414463.1| deaminase-reductase domain-containing protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154157589|gb|ABS64806.1| bifunctional deaminase-reductase domain protein [Parvibaculum
           lavamentivorans DS-1]
          Length = 176

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-L 352
           GG  +A S     L+D   +Y   +V+G G   +P   G           D  G DV  L
Sbjct: 116 GGPELARSLTELGLIDEYRIYLHPVVLGSG---TPFFAG-PRPPLRLAASDPMGEDVIRL 171

Query: 353 EYIG 356
            Y+ 
Sbjct: 172 TYVP 175


>gi|284043910|ref|YP_003394250.1| CMP/dCMP deaminase zinc-binding protein [Conexibacter woesei DSM
           14684]
 gi|283948131|gb|ADB50875.1| CMP/dCMP deaminase zinc-binding protein [Conexibacter woesei DSM
           14684]
          Length = 195

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 42/114 (36%), Gaps = 23/114 (20%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-----YGGCPHAEVQALEE--AG- 64
            AL            N  V  ++V+DG V+  G             HAE +A+++  A  
Sbjct: 43  LALEAMEAG------NYGVGAVLVRDGEVVAEGRNRLLEPYVRTDCHAETEAVDQFEARF 96

Query: 65  ---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
               +A G   + +LE C      P C   +I  GIR V     D D  +  R 
Sbjct: 97  RDFPDATGTVLWTSLECC------PMCTVRLINTGIREVYYAAPDADGGMLSRW 144


>gi|86355952|ref|YP_467844.1| putative reductase protein [Rhizobium etli CFN 42]
 gi|86280054|gb|ABC89117.1| putative reductase protein [Rhizobium etli CFN 42]
          Length = 176

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           DL   +  L   G   + V  G  +A S  +  L+D  I+Y   +V+G G   +P   G 
Sbjct: 97  DLGSAIRKLKAEGDGEIEV-AGPDLARSLTDLGLIDEYIIYLHPVVLGHG---TPYFAG- 151

Query: 334 LEKNFMCVRRDYFGSDVC-LEYIG 356
                  +  D    DV  L Y+ 
Sbjct: 152 PRPRLRLIANDKIDEDVIRLVYVP 175


>gi|67525479|ref|XP_660801.1| hypothetical protein AN3197.2 [Aspergillus nidulans FGSC A4]
 gi|40743774|gb|EAA62961.1| hypothetical protein AN3197.2 [Aspergillus nidulans FGSC A4]
 gi|259485844|tpe|CBF83211.1| TPA: dihydrofolate reductase family protein (AFU_orthologue;
           AFUA_8G06820) [Aspergillus nidulans FGSC A4]
          Length = 210

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
           N +   A+    +++ ++       ++   IL   G + + V+GG  V   F+    VD 
Sbjct: 104 NHESGSAITEHLQHVRVVASP----EEADRILTEEGASLVYVDGGKTV-QEFLRRGWVDE 158

Query: 311 IILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYF 346
           ++L  + +++G   G P    +   +  F     D  
Sbjct: 159 MVLTLAPVLLGGDEGRPRLFGDLPADIRFTLCGVDVI 195


>gi|326317802|ref|YP_004235474.1| bifunctional deaminase-reductase domain-containing protein
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374638|gb|ADX46907.1| bifunctional deaminase-reductase domain protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 180

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV-DSIILYRSQIVIGEG 323
           +    R  ++ +  L  +GV  + V+GG  V  SF+   L+ D +I     ++IG G
Sbjct: 92  VRFSSRTPREEMQELARQGVHRVYVDGG-QVVQSFLRDGLIADMVITTI-PVLIGSG 146


>gi|229177174|ref|ZP_04304563.1| Enzyme [Bacillus cereus 172560W]
 gi|228606355|gb|EEK63787.1| Enzyme [Bacillus cereus 172560W]
          Length = 173

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             +     D+ +    L  +    + + GG ++   F  + L+D  ++  +  ++G  G+
Sbjct: 84  EHVEFVNEDVVEFTKRLKAQEGAKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GV 142

Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           P   ++   E N        FG  V L Y
Sbjct: 143 P-LFQDKNPEINLTLTDTKRFGQFVNLYY 170


>gi|302384487|ref|YP_003820309.1| CMP/dCMP deaminase zinc-binding protein [Clostridium
           saccharolyticum WM1]
 gi|302195115|gb|ADL02686.1| CMP/dCMP deaminase zinc-binding protein [Clostridium
           saccharolyticum WM1]
          Length = 161

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 42/114 (36%), Gaps = 18/114 (15%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGR----GVTAYGGCPHAEVQA 59
           + D + +      SR      + N     L+  KDG ++       +T      HAE Q 
Sbjct: 4   NIDMKNLKRCAEISRQSR--EAGNTPFGALLAGKDGSILLEQPNIEITEGKCTGHAETQV 61

Query: 60  LEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            E A      +     T Y T EPC+       CA  I   GI RVV  + + D
Sbjct: 62  AERASQLYSKDFLSDCTLYTTAEPCAM------CAGAIYWAGIGRVVYGMSEKD 109


>gi|229083884|ref|ZP_04216193.1| Enzyme [Bacillus cereus Rock3-44]
 gi|228699462|gb|EEL52138.1| Enzyme [Bacillus cereus Rock3-44]
          Length = 174

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D+ +    L  +  + + + GG ++   F  S L+D  I+  +  ++G  GIP   +E
Sbjct: 90  NEDVVEFTKRLKEQEGSKIWMVGGGSLLREFFKSNLIDEYIVTITPHILGS-GIP-LFKE 147

Query: 332 GYLEKNFMCVRRDYFGSDVCLEYIGKN 358
              + +        FG  V L Y  K+
Sbjct: 148 KNPQIDLTLTDTKRFGQFVNLYYKVKS 174


>gi|312890966|ref|ZP_07750492.1| bifunctional deaminase-reductase domain protein [Mucilaginibacter
           paludis DSM 18603]
 gi|311296542|gb|EFQ73685.1| bifunctional deaminase-reductase domain protein [Mucilaginibacter
           paludis DSM 18603]
          Length = 187

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 11/102 (10%)

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
              P I++T  + P+            I     DL KL+   +     ++ + GGA +  
Sbjct: 79  GAVPTIVLTHGELPLERQN--------IETYSGDLVKLVNERLKPSYKNVWLIGGAKLTK 130

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
            FI   L D I L    +++G+G   +P  +   +++ + ++
Sbjct: 131 DFIRLNLADEIRLSILPVILGDG---TPFLDLIEQEHALHLK 169


>gi|78357476|ref|YP_388925.1| cytidine/deoxycytidylate deaminase family protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78219881|gb|ABB39230.1| cytidine/deoxycytidylate deaminase family protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 155

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 39/133 (29%), Gaps = 40/133 (30%)

Query: 31  VACLIVKDGIVIGRGV---------------------------TAYGGCPHAEVQALEEA 63
           V  + VKD  ++  G                                   HAE   + +A
Sbjct: 29  VGAIAVKDKRILATGYNGAPSNVAHCLDVGCLREELGVPSGQRHEICRGLHAEQNVIIQA 88

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G    GA  Y T +PC        C + +I CG+  V      PD          + 
Sbjct: 89  AIHGVSLAGAEIYCTTQPCLI------CTKMLINCGVTAVYFMEPYPDPLSE----AMMR 138

Query: 121 QKGIIVDRMMESE 133
           + G+  + +   +
Sbjct: 139 EAGVKFEVLDYPQ 151


>gi|224456420|ref|ZP_03664893.1| zinc-binding domain-containing protein [Francisella tularensis
          subsp. tularensis MA00-2987]
 gi|254874186|ref|ZP_05246896.1| zinc-binding domain-containing protein [Francisella tularensis
          subsp. tularensis MA00-2987]
 gi|254840185|gb|EET18621.1| zinc-binding domain-containing protein [Francisella tularensis
          subsp. tularensis MA00-2987]
          Length = 72

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 6/66 (9%)

Query: 2  PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
            S  D  FM  A + +          P +  ++V+D  +I +      G      HAE+
Sbjct: 3  NYSDQDIFFMQKAYQQALLA-YQAGEVP-IGAVLVRDDQIIVQNFNQTIGLNDPTAHAEI 60

Query: 58 QALEEA 63
            L  A
Sbjct: 61 LVLRSA 66


>gi|329765297|ref|ZP_08256877.1| CMP/dCMP deaminase, zinc-binding domain-containing protein
           [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329138203|gb|EGG42459.1| CMP/dCMP deaminase, zinc-binding domain-containing protein
           [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 187

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 50/170 (29%), Gaps = 52/170 (30%)

Query: 5   SFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----------- 52
           ++D  FM  A   ++     +T     V  +IV+    +  G                  
Sbjct: 21  NWDEYFMLQA-ELAKLRSNCMTR---QVGAVIVRKNRQLATGYNGTPPGIKNCFEGGCRR 76

Query: 53  --------------------PHAEVQALEEAG-----EEARGATAYVTLEPCSHYGRSPP 87
                                HAE  A+             GA  Y T  PC        
Sbjct: 77  CQLRMEGKIESGASLDRCLCNHAEANAIMHCAILGIEAGIAGAILYTTFVPCLE------ 130

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
           C +  I  GI++ V     P+        + L + G+ V +M +++   +
Sbjct: 131 CTKMAITIGIKKFVCLDSYPET-----DFELLKEAGVEVVQMDKNKITKW 175


>gi|328847991|gb|EGF97265.1| hypothetical protein MELLADRAFT_54347 [Melampsora larici-populina
           98AG31]
          Length = 295

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 48/150 (32%), Gaps = 42/150 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTA-------------- 48
            +D  FM+ A   +            V  +++  +D  V+  G                 
Sbjct: 150 DWDQYFMTLA-NLASLRSNCMKR--RVGAVLITKRDKRVLSTGYNGTPRGMTNCNEGGCA 206

Query: 49  ---YGGCP-------HAEVQALEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                G         HAE  AL EAG +      G+T Y    PC        C+  I++
Sbjct: 207 RFSKCGTDLNECLCLHAEENALLEAGRDRMGAGEGSTLYCNTCPCLR------CSVKIVQ 260

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           CG+R VV         +        ++ G+
Sbjct: 261 CGVREVVYSFSYS---MDIGTAAVFAEAGV 287


>gi|212702197|ref|ZP_03310325.1| hypothetical protein DESPIG_00208 [Desulfovibrio piger ATCC 29098]
 gi|212674402|gb|EEB34885.1| hypothetical protein DESPIG_00208 [Desulfovibrio piger ATCC 29098]
          Length = 156

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 44/129 (34%), Gaps = 40/129 (31%)

Query: 31  VACLIVKDGIVIGRGV---------------------------TAYGGCPHAEVQALEEA 63
           V  + VKD  ++  G                                   HAE   + +A
Sbjct: 25  VGAIAVKDRHILATGYNGAPSGVRHCLETGCLREQMGIPSGQRHEICRGLHAEQNVIIQA 84

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G    GA  Y T  PC+       C++ +I CGI+ +      PD      GL  LS
Sbjct: 85  AVHGVSIAGAELYCTTFPCAM------CSKMLINCGIKHIWYSEHYPD----ELGLAMLS 134

Query: 121 QKGIIVDRM 129
           + G+  +++
Sbjct: 135 EAGVTFEQI 143


>gi|229015976|ref|ZP_04172937.1| Enzyme [Bacillus cereus AH1273]
 gi|229022193|ref|ZP_04178743.1| Enzyme [Bacillus cereus AH1272]
 gi|228739124|gb|EEL89570.1| Enzyme [Bacillus cereus AH1272]
 gi|228745336|gb|EEL95377.1| Enzyme [Bacillus cereus AH1273]
          Length = 179

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 3/100 (3%)

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
           V + + +  N N+ + +  D+ +    L  +  + + + GG ++   F  + L+D  ++ 
Sbjct: 80  VFSRSEKGSNGNVEFVN-EDVVEFTKRLKSQEGSKIWMVGGGSLLREFFKNNLIDEYVVT 138

Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
            +  ++G  GIP   +E   E N        FG  V L Y
Sbjct: 139 ITPHILGS-GIP-LFKEKNPEINLTLTDTKRFGQFVNLYY 176


>gi|254370029|ref|ZP_04986036.1| predicted protein [Francisella tularensis subsp. tularensis
          FSC033]
 gi|151568274|gb|EDN33928.1| predicted protein [Francisella tularensis subsp. tularensis
          FSC033]
          Length = 66

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 6/66 (9%)

Query: 2  PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
            S  D  FM  A + +          P +  ++V+D  +I +      G      HAE+
Sbjct: 3  NYSDQDIFFMQKAYQQALLA-YQAGEVP-IGAVLVRDDQIIVQNFNQTIGLNDPTAHAEI 60

Query: 58 QALEEA 63
            L  A
Sbjct: 61 LVLRSA 66


>gi|124262738|ref|YP_001023208.1| deoxycytidylate deaminase-like protein [Methylibium petroleiphilum
           PM1]
 gi|124266394|ref|YP_001020398.1| deoxycytidylate deaminase-like protein [Methylibium petroleiphilum
           PM1]
 gi|124259169|gb|ABM94163.1| deoxycytidylate deaminase-like protein [Methylibium petroleiphilum
           PM1]
 gi|124261984|gb|ABM96973.1| deoxycytidylate deaminase-like protein [Methylibium petroleiphilum
           PM1]
          Length = 187

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 60/190 (31%), Gaps = 41/190 (21%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGC-------- 52
           P+  + + FM  A+  +         N      I   D  ++G G               
Sbjct: 5   PLIDWHSMFMGVAMLAAARSKDARKRN---GACIASADNKILGVGYNGLPRGCDDDDPSY 61

Query: 53  ----------------PHAEVQALEEAGEEA-RGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                            HAEV A+         G+T Y T  PC      P C Q II+ 
Sbjct: 62  WADVDDDPVQSRHSYIVHAEVNAILNCVVLPLTGSTIYTTQFPC------PRCVQSIIQV 115

Query: 96  GIRRVVVCVDDPD-VRVSGRGLQWLSQKGIIVDRMMESE-----GKIFLHAYLTRQVEKR 149
           GI+RVV        V ++    + L   GI V  + E E         L  ++    ++ 
Sbjct: 116 GIKRVVFLDKKTHQVALNSASDKMLVDAGIEVLSLEELESTASRWCEKLDEFVRTTGQEM 175

Query: 150 SHITLKIAVS 159
              T  +  S
Sbjct: 176 PVATAPLPPS 185


>gi|311899518|dbj|BAJ31926.1| putative cytosine deaminase [Kitasatospora setae KM-6054]
          Length = 153

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 52/148 (35%), Gaps = 17/148 (11%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
             ++  AL  +   +      P  A L  +DG ++GRG            HAE  A   A
Sbjct: 11  RAWLDVALAEAETGLAE-GGIPIGAALFRRDGELLGRGHNRRVQDGDPSMHAETSAFRAA 69

Query: 64  G--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           G     R      TL PC +      C+  + + GI  VV+     +      G  WL+ 
Sbjct: 70  GRLRGYRDTVMVTTLSPCWY------CSGLVRQFGIGHVVIG----ESTTFTGGHDWLAT 119

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            G  +  + +      +  + T + +  
Sbjct: 120 HGTGITLLDDPRCVRLMTDFTTARPDLW 147


>gi|153853920|ref|ZP_01995253.1| hypothetical protein DORLON_01244 [Dorea longicatena DSM 13814]
 gi|149753302|gb|EDM63233.1| hypothetical protein DORLON_01244 [Dorea longicatena DSM 13814]
          Length = 215

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 11/141 (7%)

Query: 222 IILDPHFKLS-LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKL 278
           II+D   KL   D+          +II +E            ++I+ I C  +  DL + 
Sbjct: 76  IIVDTKGKLLWPDA---SDMDKPYLIITSEQVTKEYLAYLDGQHISWIACGKERIDLVRA 132

Query: 279 LTILV-GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
             IL    GV  + + GG A+   F+++ L+D I +     +     +PS  +   ++  
Sbjct: 133 CEILASEFGVERMGIVGGPAINTGFLDAGLLDEISILMGAGIDARREMPSVFDGFAMDHP 192

Query: 338 FMCVR---RDYFGSD-VCLEY 354
              ++      F SD + + Y
Sbjct: 193 LAHLKLTNVQRFDSDAIWIRY 213


>gi|327325690|gb|EGE67487.1| deoxycytidylate deaminase [Propionibacterium acnes HL096PA3]
          Length = 152

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 43/137 (31%), Gaps = 45/137 (32%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP------- 53
            V  +D  F+  A   S            V  L+V +  +I  G      G P       
Sbjct: 10  TVPDWDQYFLGIAEAVSARAKCTRR---RVGALLVHEHRIIATGYNGAAPGRPDCLEGAC 66

Query: 54  ----------------------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRS 85
                                       HAE+ AL  A  +  G+TAYVT +PCS     
Sbjct: 67  PRGRLDYGEVPAFSDYDVPGSPGFCIAIHAEMNALLFATRDTAGSTAYVTDKPCSG---- 122

Query: 86  PPCAQFIIECGIRRVVV 102
             C + +   G+ R V 
Sbjct: 123 --CRKALAAAGVVRAVW 137


>gi|269928636|ref|YP_003320957.1| CMP/dCMP deaminase zinc-binding protein [Sphaerobacter thermophilus
           DSM 20745]
 gi|269787993|gb|ACZ40135.1| CMP/dCMP deaminase zinc-binding protein [Sphaerobacter thermophilus
           DSM 20745]
          Length = 191

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 41/150 (27%), Gaps = 41/150 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
           + D  +M  A+        L S    V  ++V    VI  G                   
Sbjct: 13  ARDEYYMRLAMAVRERASCLGS---RVGAVLVLQDRVIATGYNGTPMGMKNCDEGGCDRC 69

Query: 48  -----AYGGC-------PHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFI 92
                   G         HAE   L  A   G   RGA  Y T++PC        C + +
Sbjct: 70  AHPERYPAGQGYDACICVHAEQNLLLTAARFGIAVRGAVVYTTMQPCFG------CLKEL 123

Query: 93  IECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           ++  I  V                + + Q 
Sbjct: 124 LQAEIEAVYYLHPWQPPAHLQEQYERIQQA 153


>gi|226312451|ref|YP_002772345.1| hypothetical protein BBR47_28640 [Brevibacillus brevis NBRC 100599]
 gi|226095399|dbj|BAH43841.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 186

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 61/169 (36%), Gaps = 29/169 (17%)

Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215
           +AV+ D  I                  VH L  Q D IL G  +            +   
Sbjct: 9   LAVTLDGFIEGKNGEVDWCIMDAEMGFVHFL-HQIDTILYGRKS-----------YDLWG 56

Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVI-IVTENDDPVLALAFRKKNINIIYCDCRD 274
           +++P               +   T     +  +V   +  V +   +  +   I+ +   
Sbjct: 57  QYTP---------------ENEHTDTEKEIWGLVHRKEKYVFSKTQKGTDHKAIFINDNI 101

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           L+++  +L  +    + + GGA++  +FI+  LVD   L    +++GEG
Sbjct: 102 LEEV-NLLKNKPGKDIWLYGGASLITTFISLELVDEFRLSVHPVILGEG 149


>gi|238761261|ref|ZP_04622238.1| RibD C-terminal domain [Yersinia kristensenii ATCC 33638]
 gi|238761514|ref|ZP_04622490.1| RibD C-terminal domain [Yersinia kristensenii ATCC 33638]
 gi|238700488|gb|EEP93229.1| RibD C-terminal domain [Yersinia kristensenii ATCC 33638]
 gi|238700741|gb|EEP93481.1| RibD C-terminal domain [Yersinia kristensenii ATCC 33638]
          Length = 183

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 4/82 (4%)

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
             PVI+++   +  +  A  K+ + +   +    K L+  L   G     ++GG  V  S
Sbjct: 71  EKPVIVMSRTLEESIIPAHLKQKVQVTRLE---PKALMVSLSEAGWKRAYIDGG-QVIQS 126

Query: 302 FINSRLVDSIILYRSQIVIGEG 323
           FI   L++ + + +  I+IG+G
Sbjct: 127 FIRDGLIEDLAITQVPILIGQG 148


>gi|298493071|ref|YP_003723248.1| CMP/dCMP deaminase zinc-binding protein ['Nostoc azollae' 0708]
 gi|298234989|gb|ADI66125.1| CMP/dCMP deaminase zinc-binding protein ['Nostoc azollae' 0708]
          Length = 194

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 42/128 (32%), Gaps = 39/128 (30%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCPHAEVQ----- 58
           ++D  F+  A + +      T     V  +IVK+  V+  G      G  H   Q     
Sbjct: 15  TWDEYFLMLA-KLA--ATRSTCIAFPVGAVIVKNKQVVATGYNGSPSGSAHCTSQGYCYP 71

Query: 59  --------------ALE----------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                         A+             G    GA+ YVTLEPC        C + +I 
Sbjct: 72  GLTSCDASKTLPSRAVHAEANAIAQAANYGISTYGASIYVTLEPCL------SCLKLVIS 125

Query: 95  CGIRRVVV 102
            GI+ V  
Sbjct: 126 AGIKEVFY 133


>gi|241202989|ref|YP_002974085.1| bifunctional deaminase-reductase domain protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240856879|gb|ACS54546.1| bifunctional deaminase-reductase domain protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 185

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 1/78 (1%)

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
           LT L      ++L+ G A +A S + + L+D + +    +++G G       EG L    
Sbjct: 106 LTRLKQEDGKTILIFGSAELADSLLKAGLIDEVRVCLVPVILGGGNPLFKQAEGQLPLKL 165

Query: 339 MCVRRDYFGSDVCLEYIG 356
           +       G  V L Y  
Sbjct: 166 IESSTTE-GGAVILRYEP 182


>gi|307298994|ref|ZP_07578796.1| dihydrofolate reductase region [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915419|gb|EFN45804.1| dihydrofolate reductase region [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 166

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 2/83 (2%)

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
            K+LL  L  +G   + + GGA     F +  LV+ + +    I+    GI    E    
Sbjct: 86  PKELLEDLEKKGHDEVCLIGGAETFDHFADLGLVNELHITFEPII--RTGIAGLGETMER 143

Query: 335 EKNFMCVRRDYFGSDVCLEYIGK 357
           + +         G  +   Y  K
Sbjct: 144 DLDLSLKEFRKLGEAILTVYEVK 166


>gi|222111027|ref|YP_002553291.1| bifunctional deaminase-reductase domain-containing protein
           [Acidovorax ebreus TPSY]
 gi|221730471|gb|ACM33291.1| bifunctional deaminase-reductase domain protein [Acidovorax ebreus
           TPSY]
          Length = 193

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P  + +    P         +I  +  D R +   + +    G  +L V GG  +A  F 
Sbjct: 76  PAWVFSSRRLP----GIDGADIRFVQGDVRPVHAAMRLAA--GTKNLWVVGGGDLAGQFY 129

Query: 304 NSRLVDSIILYRSQIVIGEG 323
           ++ L+D +IL    + +G G
Sbjct: 130 DAGLLDELILQVGSVTLGRG 149


>gi|66823805|ref|XP_645257.1| hypothetical protein DDB_G0272442 [Dictyostelium discoideum AX4]
 gi|60473427|gb|EAL71373.1| hypothetical protein DDB_G0272442 [Dictyostelium discoideum AX4]
          Length = 241

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 20/116 (17%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP--HAEVQALEE 62
           F  ++M  AL  +  H      N      IV K+G ++        G    H E++A+  
Sbjct: 64  FHEKYMRIALDKAIEH------NSKFGAAIVHKNGTLMCTAANTGEGSRILHGEIRAILN 117

Query: 63  AGEEARGAT-----AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
             +  +  T      Y T EPC      P C+  ++     +V+      ++    
Sbjct: 118 CTQLYQQETWEDYYMYTTGEPC------PMCSAALLWTKFEKVIFGSFISNMYCER 167


>gi|282855290|ref|ZP_06264622.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes J139]
 gi|289425655|ref|ZP_06427427.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes SK187]
 gi|289426995|ref|ZP_06428714.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes J165]
 gi|295131477|ref|YP_003582140.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes SK137]
 gi|282581878|gb|EFB87263.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes J139]
 gi|289153956|gb|EFD02649.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes SK187]
 gi|289159817|gb|EFD08002.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes J165]
 gi|291377168|gb|ADE01023.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes SK137]
 gi|313763352|gb|EFS34716.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL013PA1]
 gi|313773396|gb|EFS39362.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL074PA1]
 gi|313793535|gb|EFS41578.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL110PA1]
 gi|313802862|gb|EFS44075.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL110PA2]
 gi|313806308|gb|EFS44824.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL087PA2]
 gi|313810706|gb|EFS48420.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL083PA1]
 gi|313814995|gb|EFS52709.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL059PA1]
 gi|313819419|gb|EFS57133.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL046PA2]
 gi|313821226|gb|EFS58940.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL036PA1]
 gi|313822320|gb|EFS60034.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL036PA2]
 gi|313826122|gb|EFS63836.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL063PA1]
 gi|313831010|gb|EFS68724.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL007PA1]
 gi|313833143|gb|EFS70857.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL056PA1]
 gi|313838217|gb|EFS75931.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL086PA1]
 gi|314916719|gb|EFS80550.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL005PA4]
 gi|314919155|gb|EFS82986.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL050PA1]
 gi|314921235|gb|EFS85066.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL050PA3]
 gi|314926066|gb|EFS89897.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL036PA3]
 gi|314930337|gb|EFS94168.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL067PA1]
 gi|314956120|gb|EFT00516.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL027PA1]
 gi|314959653|gb|EFT03755.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL002PA1]
 gi|314962227|gb|EFT06328.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL002PA2]
 gi|314963259|gb|EFT07359.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL082PA1]
 gi|314967161|gb|EFT11260.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL082PA2]
 gi|314973919|gb|EFT18015.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL053PA1]
 gi|314976847|gb|EFT20942.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL045PA1]
 gi|314979367|gb|EFT23461.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL072PA2]
 gi|314983031|gb|EFT27123.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL110PA3]
 gi|314984969|gb|EFT29061.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL005PA1]
 gi|314986357|gb|EFT30449.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL005PA2]
 gi|314988547|gb|EFT32638.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL005PA3]
 gi|315079740|gb|EFT51728.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL053PA2]
 gi|315080992|gb|EFT52968.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL078PA1]
 gi|315083945|gb|EFT55921.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL027PA2]
 gi|315085082|gb|EFT57058.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL002PA3]
 gi|315089511|gb|EFT61487.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL072PA1]
 gi|315091627|gb|EFT63603.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL110PA4]
 gi|315093884|gb|EFT65860.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL060PA1]
 gi|315097755|gb|EFT69731.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL038PA1]
 gi|315098123|gb|EFT70099.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL059PA2]
 gi|315102747|gb|EFT74723.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL046PA1]
 gi|315104103|gb|EFT76079.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL050PA2]
 gi|327325804|gb|EGE67596.1| deoxycytidylate deaminase [Propionibacterium acnes HL103PA1]
 gi|327330862|gb|EGE72607.1| deoxycytidylate deaminase [Propionibacterium acnes HL096PA2]
 gi|327443374|gb|EGE90028.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL043PA2]
 gi|327446498|gb|EGE93152.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL043PA1]
 gi|327447592|gb|EGE94246.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL013PA2]
 gi|327451759|gb|EGE98413.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL087PA3]
 gi|327452265|gb|EGE98919.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL083PA2]
 gi|327452482|gb|EGE99136.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL092PA1]
 gi|328752304|gb|EGF65920.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL025PA2]
 gi|328755417|gb|EGF69033.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL020PA1]
 gi|328756990|gb|EGF70606.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL087PA1]
 gi|328761604|gb|EGF75121.1| deoxycytidylate deaminase [Propionibacterium acnes HL099PA1]
 gi|332676348|gb|AEE73164.1| deoxycytidylate deaminase [Propionibacterium acnes 266]
          Length = 152

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 43/137 (31%), Gaps = 45/137 (32%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP------- 53
            V  +D  F+  A   S            V  L+V +  +I  G      G P       
Sbjct: 10  TVPDWDQYFLGIAEAVSARAKCTRR---RVGALLVHEHRIIATGYNGAAPGRPDCLEGAC 66

Query: 54  ----------------------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRS 85
                                       HAE+ AL  A  +  G+TAYVT +PCS     
Sbjct: 67  PRGRLDYGEVPAFSDYDVPGSPGFCIAIHAEMNALLFATRDTAGSTAYVTDKPCSG---- 122

Query: 86  PPCAQFIIECGIRRVVV 102
             C + +   G+ R V 
Sbjct: 123 --CRKALAAAGVVRAVW 137


>gi|56752284|ref|YP_172985.1| hypothetical protein syc2275_c [Synechococcus elongatus PCC 6301]
 gi|81300628|ref|YP_400836.1| hypothetical protein Synpcc7942_1819 [Synechococcus elongatus PCC
           7942]
 gi|24251265|gb|AAN46185.1| unknown protein [Synechococcus elongatus PCC 7942]
 gi|56687243|dbj|BAD80465.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81169509|gb|ABB57849.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 194

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 62/205 (30%), Gaps = 50/205 (24%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV-----L 201
                + L IA S D  I     G   +             +Q D +L+G  T      L
Sbjct: 15  MTERRLILFIATSLDGYIARRNEGIDWLFDDADYGYSEFY-SQIDTVLMGRKTYELSMSL 73

Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
           +DDP   C++           +                         TE  DP       
Sbjct: 74  SDDPYPGCQIY----------VFSRSL--------------------TETADPA------ 97

Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
              I ++  +       L    GR      + GG  +    + +  +D +IL    I++G
Sbjct: 98  ---ITVVQGNPALWVSQLKQQPGRNF---WLVGGGQLVQQCLAADCLDELILSIHPILLG 151

Query: 322 EGGIPSPLEEGYLEKNFMCVRRDYF 346
             GIP      + E+ +  V+   +
Sbjct: 152 -NGIP-LFPSPFPEQRWQLVKTQSY 174


>gi|329925352|ref|ZP_08280289.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Paenibacillus sp. HGF5]
 gi|328939904|gb|EGG36240.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Paenibacillus sp. HGF5]
          Length = 185

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 6/116 (5%)

Query: 238 KTALLAPVI-IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
            T        +V   +  V +   +  +   I+ + R L+++   L  +    + + GGA
Sbjct: 64  HTDSEKEFWELVHSKEKYVFSRTQKGTDHKAIFINDRILEEV-NKLKNKPGKDIWLYGGA 122

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-NFMCVRRDYFGSDVC 351
           ++  +FIN  LVD   L    +V+GEG    PL     ++ N   V    F S V 
Sbjct: 123 SLITTFINLGLVDEYRLSVHPVVLGEGK---PLFVDIKQRLNLKMVNTRTFSSGVV 175


>gi|270157283|ref|ZP_06185940.1| riboflavin biosynthesis protein RibD [Legionella longbeachae
           D-4968]
 gi|289164330|ref|YP_003454468.1| dihydrofolate reductase and methyltransferase [Legionella
           longbeachae NSW150]
 gi|269989308|gb|EEZ95562.1| riboflavin biosynthesis protein RibD [Legionella longbeachae
           D-4968]
 gi|288857503|emb|CBJ11335.1| putative dihydrofolate reductase and methyltransferase [Legionella
           longbeachae NSW150]
          Length = 202

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 8/104 (7%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P+I+++    P+      K N++           L+  L  RG   L ++GG     +FI
Sbjct: 74  PIIVLSSQ--PIEIPDRLKTNVS---ASSETPTDLVKRLTKRGFKRLYIDGG-ITIQNFI 127

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
              L+  + +  + +++G G   S       +     +     G
Sbjct: 128 ADNLISDLTITIAPVLLGSGR--SLFGRLVHDIELEHLETKCIG 169


>gi|228944401|ref|ZP_04106774.1| Enzyme [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228815303|gb|EEM61551.1| Enzyme [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 173

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             +     D+ +    L G+  + + + GG ++   F  + L+D  ++  +  ++G  G+
Sbjct: 84  EHVEFVNEDVVEFTKKLKGQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GV 142

Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           P   ++   E +        FG  V L Y
Sbjct: 143 P-LFQDKNPEIHLTLTDTKRFGQFVNLYY 170


>gi|52144663|ref|YP_082166.1| dihydrofolate reductase family protein [Bacillus cereus E33L]
 gi|51978132|gb|AAU19682.1| conserved hypothetical protein; possible dihydrofolate reductase
           family protein [Bacillus cereus E33L]
          Length = 173

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             +     D+ +    L G+  + + + GG ++   F  + L+D  ++  +  ++G  G+
Sbjct: 84  EHVEFVNEDVVEFTKKLKGQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GV 142

Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           P   ++   E +        FG  V L Y
Sbjct: 143 P-LFQDKNPEIHLTLTDTKRFGQFVNLYY 170


>gi|46579613|ref|YP_010421.1| cytidine/deoxycytidylate deaminase family protein [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449028|gb|AAS95680.1| cytidine/deoxycytidylate deaminase family protein [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311233417|gb|ADP86271.1| CMP/dCMP deaminase zinc-binding protein [Desulfovibrio vulgaris
           RCH1]
          Length = 176

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 44/154 (28%), Gaps = 43/154 (27%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
           M    +   FM      +      T T   V  + VKD  ++  G               
Sbjct: 1   MSRMPWPDYFMQITYLVAERS---TCTRRKVGAIAVKDKRILATGYNGAPSNVAHCLEVG 57

Query: 47  -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE   + +A   G    G+  Y T +PC        C +
Sbjct: 58  CLREQLGVPSGQRHEICRGLHAEQNVIIQAAIHGVSLTGSEIYCTTQPCLI------CTK 111

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            +I CG+R V      PD          L + G+
Sbjct: 112 MLINCGVRAVYYTESYPDSLAE----AMLREAGV 141


>gi|229101410|ref|ZP_04232153.1| Enzyme [Bacillus cereus Rock3-28]
 gi|228681986|gb|EEL36120.1| Enzyme [Bacillus cereus Rock3-28]
          Length = 174

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 2/93 (2%)

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             +     D+ +    L  +  + + + GG ++   F  + L+D  ++  +  ++G  G+
Sbjct: 84  EHVEFVNEDVVEFTKRLKEQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GV 142

Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           P   ++   E N        FG  V L Y  K+
Sbjct: 143 P-LFQDKNPEINLTLTDTKCFGQFVNLYYKVKS 174


>gi|119961000|ref|YP_947142.1| riboflavin biosynthesis protein RibD [Arthrobacter aurescens TC1]
 gi|119947859|gb|ABM06770.1| riboflavin biosynthesis protein RibD [Arthrobacter aurescens TC1]
          Length = 235

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 20/30 (66%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GGA  A  F+++ L+D + L+ + +++G G
Sbjct: 174 GGAQTARQFLSAGLMDELRLHIAPMILGGG 203


>gi|304411509|ref|ZP_07393122.1| bifunctional deaminase-reductase domain protein [Shewanella baltica
           OS183]
 gi|307306715|ref|ZP_07586457.1| bifunctional deaminase-reductase domain protein [Shewanella baltica
           BA175]
 gi|304350036|gb|EFM14441.1| bifunctional deaminase-reductase domain protein [Shewanella baltica
           OS183]
 gi|306910683|gb|EFN41112.1| bifunctional deaminase-reductase domain protein [Shewanella baltica
           BA175]
          Length = 183

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 43/117 (36%), Gaps = 9/117 (7%)

Query: 235 KIIKTALLAPVI---IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
           K++      P +   +   +   V   +   +++ ++  D   + +    L  RG   L 
Sbjct: 58  KVLSFDCDWPYVNIPVFVLSRSGVTVPSALSEHVQVLNGDTASISE---QLKTRGFKHLY 114

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
           ++GG      F+ + L+  + L R   ++G  GIP            M +    + +
Sbjct: 115 IDGG-QTIQGFLAAGLIQELTLTRIPTLLG-KGIP-LFGNLAQALQLMPIHTQQYDN 168


>gi|321254949|ref|XP_003193256.1| hypothetical protein CGB_D0460W [Cryptococcus gattii WM276]
 gi|317459726|gb|ADV21469.1| Hypothetical Protein CGB_D0460W [Cryptococcus gattii WM276]
          Length = 224

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 36/124 (29%), Gaps = 31/124 (25%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAY----GGCPHAEVQ 58
             D  +M  ++                  +IV   +  ++  G  +         H E+ 
Sbjct: 35  EVDLHWMRKSIEVMPPCHFNAY-----GSVIVNASNNELLCSGYNSQLEIGDPTEHGEIN 89

Query: 59  ALEEA-------GEEARGAT-------AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
           A+          G      T        Y T EPC   G +      I++ G +RVV   
Sbjct: 90  AIRNCVKKYTELGWTPAQITEIWPQSWIYTTAEPCPMCGST------ILQSGFKRVVYGT 143

Query: 105 DDPD 108
             P 
Sbjct: 144 SSPH 147


>gi|227903931|ref|ZP_04021736.1| deaminase-reductase domain protein [Lactobacillus acidophilus ATCC
           4796]
 gi|227868322|gb|EEJ75743.1| deaminase-reductase domain protein [Lactobacillus acidophilus ATCC
           4796]
          Length = 127

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 9/120 (7%)

Query: 245 VIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGR-GVTSLLVEGGAAVAHS 301
           +I+ +EN          + NI+ I    +  DLK+ + IL    G+  L V  G  +   
Sbjct: 10  LILTSENVSSAYIDYLNQNNISWIATGKEHVDLKRAMAILADEFGIKRLAVVSG-KINGG 68

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVCLEYIGK 357
           F+ + LVD I +     + G  G P+ ++       +      V+    G+ V L Y+ K
Sbjct: 69  FLKADLVDEISILLGSGIDGRTGQPAMVDGLTSSTPVPLKLKSVQSYPDGA-VWLRYLTK 127


>gi|148271718|ref|YP_001221279.1| putative cytosine/adenosine deaminase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147829648|emb|CAN00564.1| putative cytosine/adenosine deaminase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 149

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 54/146 (36%), Gaps = 21/146 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE- 65
           M+ AL  +R     T   P  A ++  DG+VIGRG            HAEV+AL EA   
Sbjct: 1   MAVALDEAR-ACAATGDVPVGAVVVDADGVVIGRGRNLREARQDPTAHAEVEALREAAAV 59

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS- 120
                  G T  VTLEPC        CA  I+   + RVV    D     +G     L  
Sbjct: 60  TGDRHLVGTTLVVTLEPC------VMCAGAILAARVPRVVFGAWDEKAGAAGSLYDVLRD 113

Query: 121 ----QKGIIVDRMMESEGKIFLHAYL 142
                +  +   +   E    L  + 
Sbjct: 114 RRLPHRAEVFAGVAAEECAALLDGFF 139


>gi|118616295|ref|YP_904627.1| hypothetical protein MUL_0449 [Mycobacterium ulcerans Agy99]
 gi|118568405|gb|ABL03156.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
          Length = 102

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 11/82 (13%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA-- 63
          F   A+ F+R +V         A +IVKDG V+               HAE+ A+  A  
Sbjct: 4  FAQRAIDFARLNVAEGGR--PFATVIVKDGQVLAESANKVAQTNDPTAHAEILAIRAACT 61

Query: 64 ---GEEARGATAYVTLEPCSHY 82
              E+  G T YV   PC   
Sbjct: 62 KLGTEQLFGTTFYVLAHPCPMC 83


>gi|120602899|ref|YP_967299.1| CMP/dCMP deaminase, zinc-binding [Desulfovibrio vulgaris DP4]
 gi|120563128|gb|ABM28872.1| CMP/dCMP deaminase, zinc-binding protein [Desulfovibrio vulgaris
           DP4]
          Length = 176

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 44/154 (28%), Gaps = 43/154 (27%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
           M    +   FM      +      T T   V  + VKD  ++  G               
Sbjct: 1   MSRMPWPDYFMQITYLVAERS---TCTRRKVGAIAVKDKRILATGYNGAPSNVAHCLEVG 57

Query: 47  -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE   + +A   G    G+  Y T +PC        C +
Sbjct: 58  CLREQLGVPSGQRHEICRGLHAEQNVIIQAAIHGVSLTGSEIYCTTQPCLI------CTK 111

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            +I CG+R V      PD          L + G+
Sbjct: 112 MLINCGVRAVYYTESYPDSLAE----AMLREAGV 141


>gi|73541599|ref|YP_296119.1| bifunctional deaminase-reductase, C-terminal [Ralstonia eutropha
           JMP134]
 gi|72119012|gb|AAZ61275.1| bifunctional deaminase-reductase, C-terminal [Ralstonia eutropha
           JMP134]
          Length = 199

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 4/84 (4%)

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           A   PV++++            +  +    C  RD    +  L   G   + V+GG  V 
Sbjct: 86  AYDRPVLVLSRQLAGKPVPEPLQGKVRFSDCAPRD---AMAELAAEGAHRVYVDGG-QVV 141

Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323
            SF+   L+  +++    ++IG G
Sbjct: 142 QSFLREGLITDLVVTTVPVLIGTG 165


>gi|258545066|ref|ZP_05705300.1| dihydrofolate reductase family protein [Cardiobacterium hominis
           ATCC 15826]
 gi|258519686|gb|EEV88545.1| dihydrofolate reductase family protein [Cardiobacterium hominis
           ATCC 15826]
          Length = 183

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 2/88 (2%)

Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
           + LL  L       + + GG  +    I   L+D + +  +  ++G+ G+P         
Sbjct: 98  RLLLANLKENSKQDIWIVGGGLLISKLIQEGLLDCLQVMIAPFLLGD-GVP-LFTALDCP 155

Query: 336 KNFMCVRRDYFGSDVCLEYIGKNLCLQE 363
                      G  V L Y  ++  ++E
Sbjct: 156 YRLKLTDCRRHGQFVELFYQIRSHSIRE 183


>gi|118618319|ref|YP_906651.1| hypothetical protein MUL_2905 [Mycobacterium ulcerans Agy99]
 gi|118570429|gb|ABL05180.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
          Length = 186

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 7/86 (8%)

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
              P  + T  + PV          ++ +     L  L TI    G   + V GG  +A 
Sbjct: 75  GDKPTFVFTTRELPV------PAGADVRFVSGSVLDVLPTIEEAAGAGDIWVVGGGDLAG 128

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIP 326
            F+++  +D I    + + +  GG P
Sbjct: 129 QFLDAGALDEIRSSVAPVAL-AGGAP 153


>gi|329935857|ref|ZP_08285660.1| riboflavin biosynthesis protein RibD [Streptomyces
           griseoaurantiacus M045]
 gi|329304700|gb|EGG48575.1| riboflavin biosynthesis protein RibD [Streptomyces
           griseoaurantiacus M045]
          Length = 205

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 10/120 (8%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGG 295
                APV ++T    P                D  +  L++       R V S+   GG
Sbjct: 92  NPPYHAPVFVLT--HHPRDPQPMDGGTTFHFVTDGIESALRQAREAAGDRNV-SIH--GG 146

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           A   + ++ + L+D + L+     +G G   + L +G    N   V      S   + Y 
Sbjct: 147 ATTINQYLAAGLIDELRLHIVPFTLGAG---TRLFDGVPALNLEQVESRTADSVTHVTYR 203


>gi|319411601|emb|CBQ73645.1| related to DCD1-deoxycytidylate deaminase [Sporisorium reilianum]
          Length = 370

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 44/151 (29%), Gaps = 56/151 (37%)

Query: 30  SVACLIVKDGIVIGRGVT--------------------------------AYGGCP---- 53
            V  ++V    ++  G                                  A  G      
Sbjct: 229 RVGAVLVASNRILATGYNGTPSGLRNCNQGGCARCNNTLLPSHSSAVDGAARAGSSACGQ 288

Query: 54  --------HAEVQALEEAGE---EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE  AL EAG     A GAT Y    PC        CA  II+ GIR+VV 
Sbjct: 289 NLDECLCLHAEENALLEAGRGKIAAGGATMYCNTCPCLR------CAVKIIQTGIRKVVY 342

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
            ++     +  R      + G+ + +     
Sbjct: 343 QLEYS---MDQRTKAIFKEAGVEISQFHLDA 370


>gi|321313637|ref|YP_004205924.1| putative oxidoreductase [Bacillus subtilis BSn5]
 gi|320019911|gb|ADV94897.1| putative oxidoreductase [Bacillus subtilis BSn5]
          Length = 188

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 3/105 (2%)

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           +V      V +    + +   I+ +   L+++   L  +    + + GGA++  +FIN  
Sbjct: 79  LVHSKKKYVFSRTQNEIDNQAIFINDNILEEV-NKLKKKSGKDIWLYGGASLITTFINLG 137

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           LVD   L    +V+GEG       +     N   V    F S V 
Sbjct: 138 LVDEFRLSIHPVVLGEG--KPLFIDVKQRINLKMVNTRTFSSGVV 180


>gi|291486714|dbj|BAI87789.1| hypothetical protein BSNT_06252 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 188

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 3/105 (2%)

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           +V      V +    + +   I+ +   L+++   L  +    + + GGA++  +FIN  
Sbjct: 79  LVHSKKKYVFSRTQNEIDNQAIFINDNILEEV-NKLKKKSGKDIWLYGGASLITTFINLG 137

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           LVD   L    +V+GEG       +     N   V    F S V 
Sbjct: 138 LVDEFRLSIHPVVLGEG--KPLFIDVKQRINLKMVNTRTFSSGVV 180


>gi|228925837|ref|ZP_04088921.1| Enzyme [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228833852|gb|EEM79405.1| Enzyme [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 173

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             +     D+ +    L G+  + + + GG ++   F  + L+D  ++  +  ++G  G+
Sbjct: 84  EHVEFVNEDVVEFTKKLKGQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GV 142

Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           P   ++   E +        FG  + L Y
Sbjct: 143 P-LFQDKNPEIHLTLTDTKRFGQFINLYY 170


>gi|40713146|emb|CAE53346.1| hypothetical protein [Actinoplanes teichomyceticus]
 gi|45580845|emb|CAG15005.1| dihydrofolate reductase [Actinoplanes teichomyceticus]
          Length = 179

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 69/200 (34%), Gaps = 37/200 (18%)

Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH 217
           +S D  I   G     I  +++ +    + A + A+L+G GT       +  R+ G  + 
Sbjct: 16  MSLDGFIAGPGHAMDWIFEYLTGDMFPEVMASTGAMLIGRGTYE-----VAKRMAG--QG 68

Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277
           +P     D   +  L  +       A   +  + ++ V          N           
Sbjct: 69  TPY----DGGAQFVLTHEPPHEPDPAVTFLSCDIEEAVATARSAAGGKN----------- 113

Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
            L IL            GA VA   +   LVD I++Y   +++G+G   SP     +  +
Sbjct: 114 -LEIL------------GADVAAQCLRRGLVDEILVYVVPVLLGDGVRFSPPSLDRI--D 158

Query: 338 FMCVRRDYFGSDVCLEYIGK 357
              +     G+   L +  +
Sbjct: 159 LEPLSNTRSGAVTMLRFRVR 178


>gi|291515557|emb|CBK64767.1| Cytosine/adenosine deaminases [Alistipes shahii WAL 8301]
          Length = 148

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 52/163 (31%), Gaps = 41/163 (25%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIV------------IGRGV-- 46
           M     D +FM  AL  ++  +              K   V            IGRG   
Sbjct: 1   MEQHETDEKFMRLALNEAQKAL--------------KQQEVPIGAVVVAGGAVIGRGHNL 46

Query: 47  --TAYGGCPHAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
             T      HAE+QAL  A         +  T YVT+EPC        CA  I    + R
Sbjct: 47  VETLADPTAHAEMQALTAAAATLGGKYLQECTLYVTVEPCIM------CAGAIGWAQVSR 100

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
           VV   DDP              +  +   ++  E +  +  + 
Sbjct: 101 VVWGADDPKKGFRRYSEAVFHPRTTVARGVLREECEELMSGFF 143


>gi|229089711|ref|ZP_04220972.1| Enzyme [Bacillus cereus Rock3-42]
 gi|228693610|gb|EEL47312.1| Enzyme [Bacillus cereus Rock3-42]
          Length = 179

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D+ +    L  +  + + + GG ++   F  + L+D  ++  +  ++G  G+P   ++
Sbjct: 96  NEDVVEFTKRLKAQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVP-LFQD 153

Query: 332 GYLEKNFMCVRRDYFGSDVCLEY 354
              E +   +    FG  V L Y
Sbjct: 154 KNPEIHLTLMDTKRFGQFVNLYY 176


>gi|149925488|ref|ZP_01913752.1| hypothetical protein LMED105_04672 [Limnobacter sp. MED105]
 gi|149825605|gb|EDM84813.1| hypothetical protein LMED105_04672 [Limnobacter sp. MED105]
          Length = 182

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
              L+  L  +GV  + ++GG     SF+   LV+SI +    +++G+G
Sbjct: 99  PAVLIERLSQQGVKKVYLDGG-QTIQSFLAEGLVNSITVTTIPVLLGKG 146


>gi|319424867|gb|ADV52941.1| bifunctional deaminase-reductase domain protein [Shewanella
           putrefaciens 200]
          Length = 183

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           +   +   V   +   +++ ++  D      +   L  RG   L V+GG      F+ + 
Sbjct: 73  VFVLSRSGVTVPSALSEHVQVLNGDA---ASISKQLKTRGFKHLYVDGG-QTIQGFLAAG 128

Query: 307 LVDSIILYRSQIVIGEG 323
           L+  + L R   ++G+G
Sbjct: 129 LIQELTLTRIPTLLGKG 145


>gi|229159729|ref|ZP_04287738.1| Enzyme [Bacillus cereus R309803]
 gi|228623754|gb|EEK80571.1| Enzyme [Bacillus cereus R309803]
          Length = 173

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D+ +    L  +  + + + GG ++   F  + L+D  ++  +  ++G  G+P   ++
Sbjct: 90  NEDIVEFTKRLKAQEGSKIWMVGGGSLLKEFFKNNLIDEYVVTITPHILGS-GVP-LFQD 147

Query: 332 GYLEKNFMCVRRDYFGSDVCLEY 354
                N        FG  V L Y
Sbjct: 148 KNPGINLTLTDTKRFGQFVNLYY 170


>gi|171676245|ref|XP_001903076.1| hypothetical protein [Podospora anserina S mat+]
 gi|170936188|emb|CAP60848.1| unnamed protein product [Podospora anserina S mat+]
          Length = 685

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 6/48 (12%)

Query: 17  FSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
            +R  +  T+  P V C++V +G VI RG+ A      G  HAE+ A+
Sbjct: 332 QARLAL-RTNETP-VGCVLVHNGRVIARGMNATNVSRNGTRHAELMAI 377


>gi|313829388|gb|EFS67102.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL063PA2]
 gi|314969803|gb|EFT13901.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL037PA1]
 gi|315108887|gb|EFT80863.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL030PA2]
          Length = 152

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 43/137 (31%), Gaps = 45/137 (32%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP------- 53
            V  +D  F+  A   S            V  L+V +  +I  G      G P       
Sbjct: 10  TVPDWDQYFLGIAEAVSARAKCTRR---RVGALLVHEHRIIATGYNGAAPGRPDCLEGAC 66

Query: 54  ----------------------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRS 85
                                       HAE+ AL  A  +  G+TAYVT +PCS     
Sbjct: 67  PRGRLDYGEVPAFSDYDVPGSPGFCIAIHAEMNALLFATRDTAGSTAYVTDKPCSG---- 122

Query: 86  PPCAQFIIECGIRRVVV 102
             C + +   G+ R V 
Sbjct: 123 --CRKALAAAGVVRAVW 137


>gi|313204838|ref|YP_004043495.1| bifunctional deaminase-reductase domain protein [Paludibacter
           propionicigenes WB4]
 gi|312444154|gb|ADQ80510.1| bifunctional deaminase-reductase domain protein [Paludibacter
           propionicigenes WB4]
          Length = 255

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 4/117 (3%)

Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN---INIIYCDCRDLKKLL 279
           ++D   +     K         +I +T  + P   LAF ++      I   +  +L +  
Sbjct: 108 VVDGRGRFRNGYKAYFDNPETYMIHLTSYNAPQEYLAFLQREEIPYIITGKEKVNLTESF 167

Query: 280 TILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
             L     V  +L   G  +A + I   L+D I +  S  + G    P       +E
Sbjct: 168 DKLYNILNVKCILTTSGGKLAGALIRENLLDEINILFSPSIYGGFQTPILFNSPDIE 224


>gi|120600429|ref|YP_965003.1| deaminase-reductase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|120560522|gb|ABM26449.1| bifunctional deaminase-reductase domain protein [Shewanella sp.
           W3-18-1]
          Length = 183

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           +   +   +   +   +++ ++  +  ++ K    L  RG   L ++GG      F+ + 
Sbjct: 73  VFVLSRSGITVPSALSEHVQVLNGNAANISK---QLRERGFKHLYIDGG-QTIQGFLAAG 128

Query: 307 LVDSIILYRSQIVIGEG 323
           L+  + L R   ++G+G
Sbjct: 129 LIQELTLTRIPTLLGKG 145


>gi|146291638|ref|YP_001182062.1| deaminase-reductase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|145563328|gb|ABP74263.1| bifunctional deaminase-reductase domain protein [Shewanella
           putrefaciens CN-32]
          Length = 183

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           +   +   +   +   +++ ++  +  ++ K    L  RG   L ++GG      F+ + 
Sbjct: 73  VFVLSRSGITVPSALSEHVQVLNGNAANISK---QLRERGFKHLYIDGG-QTIQGFLAAG 128

Query: 307 LVDSIILYRSQIVIGEG 323
           L+  + L R   ++G+G
Sbjct: 129 LIQELTLTRIPTLLGKG 145


>gi|67922330|ref|ZP_00515842.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
           [Crocosphaera watsonii WH 8501]
 gi|67855781|gb|EAM51028.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
           [Crocosphaera watsonii WH 8501]
          Length = 189

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 42/131 (32%), Gaps = 39/131 (29%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCPHAEVQ-------- 58
             F+  A + +      T     V  +IVKD  V+  G      G  H   Q        
Sbjct: 13  EYFIMMA-KLA--ATRSTCLAFPVGAVIVKDRQVLATGYNGSPSGSAHCTAQGFCYPGLD 69

Query: 59  -----------ALE----------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                      A+           + G    GA+ YVTLEPC +      C + II  GI
Sbjct: 70  SCDSPSGLPSRAIHAEANAIAQAAKHGISTHGASIYVTLEPCLY------CLKLIISAGI 123

Query: 98  RRVVVCVDDPD 108
           R V    D   
Sbjct: 124 REVFYESDFNK 134


>gi|150017101|ref|YP_001309355.1| deaminase-reductase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903566|gb|ABR34399.1| bifunctional deaminase-reductase domain protein [Clostridium
           beijerinckii NCIMB 8052]
          Length = 189

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 6/116 (5%)

Query: 238 KTALLAPVI-IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
            +     V  ++   +  V +      N    + +   L+++   L  +    + + GGA
Sbjct: 69  DSDDEKEVWKLIHSKEKYVFSRTQIATNNQATFINENILEEV-NKLKNKPGKDIWLYGGA 127

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-NFMCVRRDYFGSDVC 351
           ++  +FIN  LVD   L    +++GEG    PL     ++ N   V    F S V 
Sbjct: 128 SLITTFINLGLVDEFRLSIHPVILGEGK---PLFNDIKQRVNLKMVNTRTFSSGVV 180


>gi|261404542|ref|YP_003240783.1| bifunctional deaminase-reductase domain-containing protein
           [Paenibacillus sp. Y412MC10]
 gi|261281005|gb|ACX62976.1| bifunctional deaminase-reductase domain protein [Paenibacillus sp.
           Y412MC10]
          Length = 185

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 6/116 (5%)

Query: 238 KTALLAPVI-IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
            T        +V   +  V +   +  +   I+ + R L+++   L  +    + + GGA
Sbjct: 64  HTDSEKEFWELVHSKEKYVFSRTQKGTDHKAIFINDRILEEV-NKLKNQPGKDIWLYGGA 122

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-NFMCVRRDYFGSDVC 351
           ++  +FIN  LVD   L    +V+GEG    PL     ++ N   V    F S V 
Sbjct: 123 SLITTFINLGLVDEYRLSVHPVVLGEGK---PLFVDIKQRLNLKMVNTRTFSSGVV 175


>gi|115379689|ref|ZP_01466768.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Stigmatella aurantiaca DW4/3-1]
 gi|310825496|ref|YP_003957854.1| RibD domain-containing protein [Stigmatella aurantiaca DW4/3-1]
 gi|115363303|gb|EAU62459.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Stigmatella aurantiaca DW4/3-1]
 gi|309398568|gb|ADO76027.1| RibD domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 174

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 5/83 (6%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           D   ++  L  R    L + GG  +A       L+D ++L  + +++G G   +PL    
Sbjct: 91  DAAAVVRTLKAREGRDLWLCGGGELASVLFAEGLIDEVLLKLNPVLLGSG---TPLLTHL 147

Query: 334 LEK-NFMCVRRDYF-GSDVCLEY 354
            +      +    + G  V L Y
Sbjct: 148 KDPTRLELLSTKVYRGGVVLLHY 170


>gi|300718994|ref|YP_003743797.1| Cytidine/deoxycytidylate deaminase [Erwinia billingiae Eb661]
 gi|299064830|emb|CAX61950.1| Cytidine/deoxycytidylate deaminase [Erwinia billingiae Eb661]
          Length = 157

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 23/105 (21%)

Query: 10  FMSAALRFSRWHV---GLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEE 62
           F+   +  +  +V   G        A +IV++G ++               HAE+ A+ E
Sbjct: 3   FVKRTIELAMQNVEEGGR-----PFATVIVRNGEIVAESANKAAQSHDPTAHAEILAIRE 57

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           A      E       Y+   PC      P C   +  C  ++V+ 
Sbjct: 58  ACKKLQTENLSDCEIYILASPC------PMCLGSLYYCSPKQVIY 96


>gi|218895703|ref|YP_002444114.1| dihydrofolate reductase family protein [Bacillus cereus G9842]
 gi|228899334|ref|ZP_04063597.1| Enzyme [Bacillus thuringiensis IBL 4222]
 gi|228963746|ref|ZP_04124888.1| Enzyme [Bacillus thuringiensis serovar sotto str. T04001]
 gi|218541110|gb|ACK93504.1| dihydrofolate reductase family protein [Bacillus cereus G9842]
 gi|228795982|gb|EEM43448.1| Enzyme [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228860365|gb|EEN04762.1| Enzyme [Bacillus thuringiensis IBL 4222]
          Length = 173

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
             L  +  + + + GG ++   F  + L+D  ++  +  ++G  G+P   ++   E N  
Sbjct: 98  KRLKEQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVP-LFQDKNPEINLT 155

Query: 340 CVRRDYFGSDVCLEY 354
                 FG  V L Y
Sbjct: 156 LTDTKRFGQFVNLYY 170


>gi|75762097|ref|ZP_00742002.1| Pyrimidine Reductase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74490415|gb|EAO53726.1| Pyrimidine Reductase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 161

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
             L  +  + + + GG ++   F  + L+D  ++  +  ++G  G+P   ++   E N  
Sbjct: 86  KRLKEQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVP-LFQDKNPEINLT 143

Query: 340 CVRRDYFGSDVCLEY 354
                 FG  V L Y
Sbjct: 144 LTDTKRFGQFVNLYY 158


>gi|300866842|ref|ZP_07111519.1| Bifunctional deaminase-reductase-like [Oscillatoria sp. PCC 6506]
 gi|300335152|emb|CBN56679.1| Bifunctional deaminase-reductase-like [Oscillatoria sp. PCC 6506]
          Length = 183

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           +L++ +  L       + + GG    H F+    +D +IL    +++G  GIP  + +  
Sbjct: 88  NLEEFIHKLRNMKGGDIWLVGGGQTIHYFLKYGFIDELILSIHPMILG-KGIPLIVNDPN 146

Query: 334 LEKNFMCVRRDYF 346
           LE          +
Sbjct: 147 LETALNLKDVIQY 159


>gi|222099791|ref|YP_002534359.1| Dihydrofolate reductase [Thermotoga neapolitana DSM 4359]
 gi|221572181|gb|ACM22993.1| Dihydrofolate reductase [Thermotoga neapolitana DSM 4359]
          Length = 172

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            K ++  L G+G   + V GG  V   F+  +LVD + +     + G G
Sbjct: 86  PKDVVEFLEGKGYREVAVIGGRTVFTQFLREKLVDEMFITIEPYLFGRG 134


>gi|260830687|ref|XP_002610292.1| hypothetical protein BRAFLDRAFT_126857 [Branchiostoma floridae]
 gi|229295656|gb|EEN66302.1| hypothetical protein BRAFLDRAFT_126857 [Branchiostoma floridae]
          Length = 267

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 14/86 (16%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGV---TAYGGCPHAEVQALEE 62
            ++M  AL+ +  H   T   P V  ++V      VIG G     A     HA + A++ 
Sbjct: 191 QKYMQRALQ-AAQHAKQTGMEP-VGAVVVDPVADEVIGVGHDLRHAGNPLHHAVMVAVDT 248

Query: 63  AGEEARGATAYVTLEPCSHYGRSPPC 88
                 G           H G +   
Sbjct: 249 VASSQDGGYW-------DHRGETGSS 267


>gi|289704736|ref|ZP_06501159.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Micrococcus luteus SK58]
 gi|289558546|gb|EFD51814.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Micrococcus luteus SK58]
          Length = 168

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 35/110 (31%), Gaps = 26/110 (23%)

Query: 30  SVACLIVK-DGIVIG------RGVTAYGGCPHAEVQALEE-----------AGEEARGAT 71
            +   +V  DG V+                 HAEV AL              G      T
Sbjct: 36  PIGAALVAGDGTVLAVVGNEREQHHDP--TAHAEVLALRRGAELRAAAGAGDGWRLTDCT 93

Query: 72  AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
             VTLEPC      P CA  ++   I RVV    DP     G  L  +  
Sbjct: 94  LVVTLEPC------PMCAGALLLARIPRVVFGAWDPKAGACGSVLDVVRD 137


>gi|254562307|ref|YP_003069402.1| Guanine deaminase [Methylobacterium extorquens DM4]
 gi|254269585|emb|CAX25555.1| Guanine deaminase (Guanase) (Guanine aminase) (Guanine
          aminohydrolase) (GAH) (GDEase) [Methylobacterium
          extorquens DM4]
          Length = 153

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 21/103 (20%)

Query: 8  ARFMSAA--LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALE 61
            ++  A  +  +    G          +IV+DG V+ R             HAE+ A+ 
Sbjct: 5  ESYLREATEIALANVAEGGR----PYGAVIVRDGEVVARAANRIHATNDPSDHAEMVAIR 60

Query: 62 EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
           A +     +      Y +  PC      P C   +   G+++
Sbjct: 61 AASQQLGRPKLDDCIVYASGRPC------PMCHAAMRLAGVKQ 97


>gi|296114354|ref|ZP_06833008.1| CMP/dCMP deaminase [Gluconacetobacter hansenii ATCC 23769]
 gi|295979115|gb|EFG85839.1| CMP/dCMP deaminase [Gluconacetobacter hansenii ATCC 23769]
          Length = 173

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 46/127 (36%), Gaps = 24/127 (18%)

Query: 38  DGIVIG------RGVTAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCSHYGRSP 86
           DG ++                 HAE+ AL EA     G+       YVTLEPC      P
Sbjct: 55  DGAILSCAGNRSEEWHDP--SAHAEMLALREATRIRGGQRLSDCALYVTLEPC------P 106

Query: 87  PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAY 141
            CA   +   I R++    DP       G +  ++ G      ++  + E E +  L A+
Sbjct: 107 MCAGAAVHFRIGRILFGAYDPKGGGVDHGPRLFARPGCLHRPEVIGGLREREAQDMLRAF 166

Query: 142 LTRQVEK 148
              +   
Sbjct: 167 FRNRRMS 173


>gi|163791627|ref|ZP_02186026.1| hypothetical protein CAT7_00675 [Carnobacterium sp. AT7]
 gi|159873116|gb|EDP67221.1| hypothetical protein CAT7_00675 [Carnobacterium sp. AT7]
          Length = 173

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D+ +++     +    +++ GG  + ++F+    +D  I+    +++GEG    PL  
Sbjct: 90  GNDIVEVIKAEQQKPGKDIMLFGGGQLVNAFLKENCIDEYIIGLIPVILGEGR---PLFY 146

Query: 332 GYLEKNFMCVRRDYFGSDVCL 352
           G      + +  +   + + +
Sbjct: 147 GGHPPIELRLEENIVDNGIVI 167


>gi|126178835|ref|YP_001046800.1| CMP/dCMP deaminase, zinc-binding [Methanoculleus marisnigri JR1]
 gi|125861629|gb|ABN56818.1| CMP/dCMP deaminase, zinc-binding protein [Methanoculleus marisnigri
           JR1]
          Length = 173

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 45/135 (33%), Gaps = 37/135 (27%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------- 53
           P +S    +M  A+  +R     T        ++V   G ++  G               
Sbjct: 13  PRASRTEWYMGIAVETARRS---TCIRRCYGAVVVNSAGEIVSTGHNGAPRGEAHCDELN 69

Query: 54  ---------------------HAEVQALEEAGEEARGATAYV-TLEP-CSHYGRSPP--- 87
                                HAE+ AL +AG  A G T Y+   E         PP   
Sbjct: 70  TCIRKQYNIPSGERYEFCRSVHAEMNALLQAGRAAAGCTMYLAGFERLTGAPSYDPPCLM 129

Query: 88  CAQFIIECGIRRVVV 102
           C++ ++  GI RVVV
Sbjct: 130 CSKMLVNAGIDRVVV 144


>gi|60688555|gb|AAX30382.1| SJCHGC03167 protein [Schistosoma japonicum]
 gi|226479958|emb|CAX73275.1| putative 6030466N05Rik protein [Schistosoma japonicum]
          Length = 98

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 8/73 (10%)

Query: 54  HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           HAE+ A L      +RG T Y T+ PC+       CA+ II+ GI+ VV   D  +   S
Sbjct: 15  HAELNAVLNRNEAHSRGCTLYSTMFPCNE------CAKVIIQAGIKEVVYHSDKKNRTAS 68

Query: 113 GRGLQWL-SQKGI 124
            +  ++L  + GI
Sbjct: 69  NQAAKYLFKKAGI 81


>gi|331000061|ref|ZP_08323756.1| conserved domain protein [Parasutterella excrementihominis YIT
           11859]
 gi|329572945|gb|EGG54565.1| conserved domain protein [Parasutterella excrementihominis YIT
           11859]
          Length = 229

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 50/123 (40%), Gaps = 7/123 (5%)

Query: 222 IILDPHFKLSLDS--KIIKT--ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--L 275
           +++DP  ++   S   + +        ++I +           ++K I  +     +  L
Sbjct: 80  VVIDPLGEIPWKSGKPVGRQGLEDARIIVITSSQASKEYLDLLKQKGIAYLISRGTEFRL 139

Query: 276 KKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
            + +  L    G+  + ++GG  V  +F N +L+D + L     V   G +P+  E G  
Sbjct: 140 TEPMEKLKSIFGIHRISLQGGRLVNGTFANEKLIDKLSLVVIPFVDSSGSVPTTFETGSF 199

Query: 335 EKN 337
            K+
Sbjct: 200 FKH 202


>gi|308516912|emb|CBW47017.1| hypothetical protein [Roseovarius sp. 217 phage 1]
          Length = 143

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 38/109 (34%), Gaps = 26/109 (23%)

Query: 14  ALRFSRW-HVGLTSTNPSVACLIVK-DGIVIGRGV-----------------TAYGGCP- 53
           AL  ++   +     +  V  +I++ D  +   G                  T       
Sbjct: 9   ALGLAQAVSLRSRDPSTKVGAVIIRPDKTIASMGYNGFPRTMQDKDIWWNDRTEKYARVI 68

Query: 54  HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           HAE+ AL  A E   G   Y T  PC  +     CA+ +I  GIR V  
Sbjct: 69  HAEMNALLNAKESVNGMQLYCT-HPCCEH-----CAKHVIAAGIRHVHF 111


>gi|298293628|ref|YP_003695567.1| bifunctional deaminase-reductase domain protein [Starkeya novella
           DSM 506]
 gi|296930139|gb|ADH90948.1| bifunctional deaminase-reductase domain protein [Starkeya novella
           DSM 506]
          Length = 176

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 6/86 (6%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D++ +L  L  R    + V  G  +A S  +  L+D   LY   +V+G G    P   
Sbjct: 95  EDDVEAVLRGLKARLAGEVAV-SGPELARSLTDLGLIDEYRLYFHPVVLGRGK---PFFA 150

Query: 332 GYLEKNFMCVRRDYFGSD-VCLEYIG 356
           G        V  D  G D V L Y+ 
Sbjct: 151 G-PRPPLRLVATDIVGEDTVRLTYVP 175


>gi|167839756|ref|ZP_02466440.1| riboflavin biosynthesis protein [Burkholderia thailandensis MSMB43]
          Length = 158

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 3/86 (3%)

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
               + +    AP +   EN         R+   +        L      L  +GV  L 
Sbjct: 19  PTLALHREDEGAPTVAPCENA---RVDDARRPRASADPDADLRLPDAFARLAAQGVNELF 75

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQ 317
           V+   A+  +  +S L D ++LY   
Sbjct: 76  VDADPALCDALFDSDLADELLLYVHP 101


>gi|50843399|ref|YP_056626.1| deoxycytidylate deaminase [Propionibacterium acnes KPA171202]
 gi|50841001|gb|AAT83668.1| deoxycytidylate deaminase [Propionibacterium acnes KPA171202]
 gi|313813655|gb|EFS51369.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL025PA1]
 gi|315107956|gb|EFT79932.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL030PA1]
 gi|327333108|gb|EGE74835.1| deoxycytidylate deaminase [Propionibacterium acnes HL097PA1]
          Length = 152

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 43/136 (31%), Gaps = 45/136 (33%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP-------- 53
           V  +D  F+  A   S            V  L+V +  +I  G      G P        
Sbjct: 11  VPDWDQYFLGIAEAVSARAKCTRR---RVGALLVHEHRIIATGYNGAAPGRPDCLEGACP 67

Query: 54  ---------------------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86
                                      HAE+ AL  A  +  G+TAYVT +PCS      
Sbjct: 68  RGRLDYGEVPAFSDYDVPGSPGFCIAIHAEMNALLFATRDTAGSTAYVTDKPCSG----- 122

Query: 87  PCAQFIIECGIRRVVV 102
            C + +   G+ R V 
Sbjct: 123 -CRKALAAAGVVRAVW 137


>gi|119714544|ref|YP_921509.1| tRNA-adenosine deaminase [Nocardioides sp. JS614]
 gi|119535205|gb|ABL79822.1| tRNA-adenosine deaminase [Nocardioides sp. JS614]
          Length = 143

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 52/147 (35%), Gaps = 23/147 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG----CPHAEVQALEEAGE 65
           M  AL  +R    L S +  +  +++  DG  + RG            HAEV AL  A  
Sbjct: 1   MRTALDEARAA--LASGDVPIGAVVLDPDGTPVARGRNVREADHDPTGHAEVVALRAAAR 58

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ--- 117
                   G T  VTLEPC        CA   +   + R+V    DP     G       
Sbjct: 59  ARGEWRLEGHTLVVTLEPC------TMCAGAAVLSRVERIVFGAWDPKAGAVGSLWDVVR 112

Query: 118 --WLSQKGIIVDRMMESEGKIFLHAYL 142
              L+ +  ++  ++  E    L  + 
Sbjct: 113 DRRLNHRPEVISGVLAEESAGLLEDFF 139


>gi|240139885|ref|YP_002964362.1| Guanine deaminase (Guanase) (Guanine aminase) (Guanine
          aminohydrolase) (GAH) (GDEase) [Methylobacterium
          extorquens AM1]
 gi|240009859|gb|ACS41085.1| Guanine deaminase (Guanase) (Guanine aminase) (Guanine
          aminohydrolase) (GAH) (GDEase) [Methylobacterium
          extorquens AM1]
          Length = 153

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 21/103 (20%)

Query: 8  ARFMSAA--LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALE 61
            ++  A  L  +    G          +IV+DG V+ R             HAE+ A+ 
Sbjct: 5  ESYLREATELALANVAEGGR----PYGAVIVRDGEVVARAANRIHATNDPSDHAEMVAIR 60

Query: 62 EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
           A +     +      Y +  PC      P C   +   G+++
Sbjct: 61 AASQQLGRPKLDDCIVYASGRPC------PMCHAAMRLAGVKQ 97


>gi|225862627|ref|YP_002748005.1| dihydrofolate reductase family protein [Bacillus cereus 03BB102]
 gi|225786274|gb|ACO26491.1| dihydrofolate reductase family protein [Bacillus cereus 03BB102]
          Length = 173

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             +     D+ +    L  +  + + + GG ++   F  + L+D  ++  +  ++G  G+
Sbjct: 84  EHVEFVNEDVVEFTKRLKAQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GV 142

Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           P   ++   E +        FG  V L Y
Sbjct: 143 P-LFQDKNPEIHLTLTDTKRFGQFVNLYY 170


>gi|163852551|ref|YP_001640594.1| CMP/dCMP deaminase zinc-binding [Methylobacterium extorquens PA1]
 gi|163664156|gb|ABY31523.1| CMP/dCMP deaminase zinc-binding [Methylobacterium extorquens PA1]
          Length = 153

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 21/103 (20%)

Query: 8  ARFMSAA--LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALE 61
            ++  A  L  +    G          +IV+DG VI R             HAE+ A+ 
Sbjct: 5  ESYLREATELALANVAEGGR----PYGAVIVRDGEVIARAANRIHATNDPSDHAEMVAIR 60

Query: 62 EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
           A +     +      Y +  PC      P C   +   G+++
Sbjct: 61 AASQQLGRPKLDDCIVYASGRPC------PMCHAAMRLAGVKQ 97


>gi|126725027|ref|ZP_01740870.1| bifunctional deaminase-reductase, C-terminal [Rhodobacterales
           bacterium HTCC2150]
 gi|126706191|gb|EBA05281.1| bifunctional deaminase-reductase, C-terminal [Rhodobacterales
           bacterium HTCC2150]
          Length = 185

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           +        +L+ +L   G     ++GG  V  SF+   L+D ++L +  I+IG+G
Sbjct: 90  VILSQLSPPELMGMLTDLGWNRAYIDGG-QVIQSFLRDDLIDDMVLTQIPILIGKG 144


>gi|254524810|ref|ZP_05136865.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Stenotrophomonas sp. SKA14]
 gi|219722401|gb|EED40926.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Stenotrophomonas sp. SKA14]
          Length = 190

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           ++   +L   GV  + ++GG     +F+ + +VD I +  + +V+G G
Sbjct: 110 EEATRLLEDLGVQDVYIDGG-RTIQAFLRADMVDEITISVAPVVLGAG 156


>gi|328954436|ref|YP_004371770.1| CMP/dCMP deaminase zinc-binding protein [Desulfobacca acetoxidans
           DSM 11109]
 gi|328454760|gb|AEB10589.1| CMP/dCMP deaminase zinc-binding protein [Desulfobacca acetoxidans
           DSM 11109]
          Length = 186

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 49/155 (31%), Gaps = 47/155 (30%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------TAYGG 51
           S+D  FM  A   S      +        ++VKD  ++  G              T   G
Sbjct: 4   SWDEYFMLIAKLVSTRSTCNSRP---TGAVLVKDRQILATGYNGSMPGAPHCTDQTMPDG 60

Query: 52  CPHAEVQALEEA------------------------GEEARGATAYVTLEPCSHYGRSPP 87
            P+   +AL+ A                        G   +GA+ YVTLEPC        
Sbjct: 61  SPYCHRRALQVADSDKYNFCRASHAEANAIAQAARHGVAIKGASLYVTLEPCYV------ 114

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           C + +    I RV       D + + R   W  Q 
Sbjct: 115 CLKLLATAQIDRVYF-ELGYDSKDADRDRYWRRQA 148


>gi|307170830|gb|EFN62941.1| tRNA-specific adenosine deaminase 2 [Camponotus floridanus]
          Length = 171

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 46/132 (34%), Gaps = 27/132 (20%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
           M +S+    +M  AL+ +     L +    V CL + +  +I  G            HAE
Sbjct: 1   MDISA----WMDVALQKAEES--LRAGEVPVGCLFIYNNEIIATGNNTVNETCNATRHAE 54

Query: 57  VQALEE----AGEEA-------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           +  +++      E+        R     VT+EPC        C   +++  +  ++    
Sbjct: 55  INCIDQVLKFCKEKCLQYETVFRNLDVVVTVEPCIM------CISALLQLQVHSIIYGCA 108

Query: 106 DPDVRVSGRGLQ 117
           +         L+
Sbjct: 109 NDRFGGCVSVLE 120


>gi|228951140|ref|ZP_04113256.1| Enzyme [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228808550|gb|EEM55053.1| Enzyme [Bacillus thuringiensis serovar kurstaki str. T03a001]
          Length = 173

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 3/100 (3%)

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
           V + + +  N N+ + +  D+ +    L  +  + + + GG  +   F  + L+D  ++ 
Sbjct: 74  VFSNSEKGSNGNVEFVN-EDVVEFTKRLKSQEGSKIWMVGGGNLLREFFKNNLIDEYVVT 132

Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
            +  ++G  G+P   ++   E N        FG  V L Y
Sbjct: 133 ITPHILGS-GVP-LFQDKNPEINLTLTDTKRFGQFVNLYY 170


>gi|229077962|ref|ZP_04210571.1| Enzyme [Bacillus cereus Rock4-2]
 gi|228705300|gb|EEL57677.1| Enzyme [Bacillus cereus Rock4-2]
          Length = 179

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 3/100 (3%)

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
           V + + +  N N+ + +  D+ +    L  +  + + + GG  +   F  + L+D  ++ 
Sbjct: 80  VFSNSEKGSNGNVEFVN-EDVVEFTKRLKSQEGSKIWMVGGGNLLREFFKNNLIDEYVVT 138

Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
            +  ++G  G+P   ++   E N        FG  V L Y
Sbjct: 139 ITPHILGS-GVP-LFQDKNPEINLTLTDTKRFGQFVNLYY 176


>gi|254409948|ref|ZP_05023728.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196182984|gb|EDX77968.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 182

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 41/128 (32%), Gaps = 39/128 (30%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCPHAEVQ----- 58
           ++D  F+  A + +      T     V  +IVK+  V+  G      G  H   Q     
Sbjct: 10  TWDEYFLMLA-KLA--ATRSTCLAFPVGAVIVKNKQVLATGYNGSPAGSVHCTEQGYCYP 66

Query: 59  --------------ALE----------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                         A+           + G     A+ YVTLEPC        C + II 
Sbjct: 67  GLSSCDVSKDMPSRAVHAEANALAQAAKHGIATTDASIYVTLEPCL------SCLKLIIS 120

Query: 95  CGIRRVVV 102
            GI  V  
Sbjct: 121 AGIHEVFY 128


>gi|325283258|ref|YP_004255799.1| tRNA(Ile)-lysidine synthase [Deinococcus proteolyticus MRP]
 gi|324315067|gb|ADY26182.1| tRNA(Ile)-lysidine synthase [Deinococcus proteolyticus MRP]
          Length = 529

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 15/103 (14%)

Query: 29  PSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEE-----ARGATAYVTLEPC 79
           P  A ++   G V+G G            HAE++AL +A          G T  VTLEPC
Sbjct: 402 PVGAAVLDPAGAVVGLGRNRSRERGDMTRHAELEALRQAASALGTPYLSGCTLAVTLEPC 461

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                 P C    +E  + R+V    +P     G     L  +
Sbjct: 462 ------PMCLGAALEARVGRIVYGAANPRAGALGGVHDLLGHR 498


>gi|300856157|ref|YP_003781141.1| putative purine deaminase, zinc-binding domain [Clostridium
           ljungdahlii DSM 13528]
 gi|300436272|gb|ADK16039.1| putative purine deaminase, zinc-binding domain [Clostridium
           ljungdahlii DSM 13528]
          Length = 163

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 40/121 (33%), Gaps = 27/121 (22%)

Query: 3   VSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIV--------IGRGVTAYGGC 52
           +S  D   ++  A   ++        N     L+V KDG +        I  G       
Sbjct: 1   MSKKDHLYYLRRANEIAKNSR--EHGNTPFGALLVDKDGNILLEQENIEISTG----DCT 54

Query: 53  PHAEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
            HAE   +  A      E     T Y T EPC        C+  I    +R VV  + + 
Sbjct: 55  GHAEASLMRRASQKYSKEFLAECTLYTTFEPC------VMCSGAIYWGNVRTVVYGLTEK 108

Query: 108 D 108
           +
Sbjct: 109 E 109


>gi|237748443|ref|ZP_04578923.1| CMP/dCMP deaminase [Oxalobacter formigenes OXCC13]
 gi|229379805|gb|EEO29896.1| CMP/dCMP deaminase [Oxalobacter formigenes OXCC13]
          Length = 164

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 48/164 (29%), Gaps = 49/164 (29%)

Query: 11  MSAAL--RFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--------------YGG--- 51
           M+ A+  R +    G       V  +IV+D  +I  G                   G   
Sbjct: 1   MNIAIAVRENANCKGR-----KVGAVIVRDNRIISTGYNGTPEGFTNCMDGGCVRCGKRE 55

Query: 52  --------------CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                         C HAE  AL  A   G     +  + TL PC        C + +++
Sbjct: 56  EYRREGKRGYDECICVHAEQNALISAARFGNAIEDSVIFSTLRPCFD------CTKLMLQ 109

Query: 95  CGIRRVVVCVD--DPDVRVSGRGLQWLSQKGIIVDRMMESEGKI 136
             IR V    D    D        + L  K I     ++ E   
Sbjct: 110 AKIRAVYYLHDLGKLDDAELQGQYELLQSKFIEGVYHVDFEDPR 153


>gi|229131593|ref|ZP_04260475.1| Enzyme [Bacillus cereus BDRD-ST196]
 gi|228651819|gb|EEL07774.1| Enzyme [Bacillus cereus BDRD-ST196]
          Length = 174

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             +     D+ +    L  +    + + GG ++   F  + L+D  ++  +  ++G  G+
Sbjct: 84  EHVEFVNEDVLEFTKRLKEQEGPKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GV 142

Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           P   +E   E +        FG  V L Y  K+
Sbjct: 143 P-LFKEKNPEIHLTLTDTKRFGQFVNLYYKVKS 174


>gi|239916882|ref|YP_002956440.1| tRNA-adenosine deaminase [Micrococcus luteus NCTC 2665]
 gi|281414664|ref|ZP_06246406.1| tRNA-adenosine deaminase [Micrococcus luteus NCTC 2665]
 gi|239838089|gb|ACS29886.1| tRNA-adenosine deaminase [Micrococcus luteus NCTC 2665]
          Length = 168

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 41/136 (30%), Gaps = 31/136 (22%)

Query: 30  SVACLIVK-DGIVIG------RGVTAYGGCPHAEVQALEE-----------AGEEARGAT 71
            +   +V  DG V+                 HAEV AL              G      T
Sbjct: 36  PIGAALVAGDGTVLAVVGNEREQHHDP--TAHAEVLALRRGAELRAAAGAHDGWRLTDCT 93

Query: 72  AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS-----QKGIIV 126
             VTLEPC      P CA  ++   I RVV    DP     G  L  +       +  + 
Sbjct: 94  LVVTLEPC------PMCAGALLLARIPRVVFGAWDPKAGACGSVLDVVRDPRFNHRVQVR 147

Query: 127 DRMMESEGKIFLHAYL 142
             +   E    L  + 
Sbjct: 148 AGVRSEESAALLRGFF 163


>gi|54026276|ref|YP_120518.1| hypothetical protein nfa43050 [Nocardia farcinica IFM 10152]
 gi|54017784|dbj|BAD59154.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 204

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           GG  +  S + + LVD + L+ + +++G G   +PL      +           + + L 
Sbjct: 144 GGGTLIGSALAAGLVDVLSLHLAPVLLGAG---TPLFTDGPPRTLRQRSVTPTSTAIHLR 200

Query: 354 Y 354
           Y
Sbjct: 201 Y 201


>gi|328854283|gb|EGG03416.1| hypothetical protein MELLADRAFT_109238 [Melampsora larici-populina
           98AG31]
          Length = 159

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 20/148 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNP---SVACLIVKD-GIVIGRGVTAY-GGCPHAE 56
             ++    +   AL+ +   V     +P   ++  LI+     ++ +G +    G  HAE
Sbjct: 6   TQTTSPKEWFPLALQEATKCV----PSPQAFNIGSLILSSSNQLLSKGHSRELPGNTHAE 61

Query: 57  VQALEEAGEE--ARGA-TAYVTLEPCS-HYGRSPPCAQFIIEC-------GIRRVVVCVD 105
             AL +  +     G+    VT+EPCS        C   I+E         I  V + V 
Sbjct: 62  ENALSKLTDLEIPDGSLKLVVTMEPCSVRLSGKTSCVDKILEWNDEHREKRIGEVWLGVL 121

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESE 133
           +P   V   G++ L + GI+V  +   E
Sbjct: 122 EPKDFVVCEGVRKLKEMGILVGVIEGFE 149


>gi|229165594|ref|ZP_04293368.1| Enzyme [Bacillus cereus AH621]
 gi|228617877|gb|EEK74928.1| Enzyme [Bacillus cereus AH621]
          Length = 174

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 2/93 (2%)

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             +     D+ +    L  +  + + + GG ++   F  + L+D  ++  +  ++G  G+
Sbjct: 84  EHVEFVNEDVLEFTKRLKEQEGSKIWMVGGGSLLRGFFKNNLIDEYVVTITPHILGS-GV 142

Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           P   +E   E +        FG  V L Y  K+
Sbjct: 143 P-LFKEKNPEIHLTLTDTKRFGQFVNLYYKVKS 174


>gi|228932076|ref|ZP_04094968.1| Enzyme [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228827659|gb|EEM73401.1| Enzyme [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 173

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             +     D+ +    L  +  + + + GG ++   F  + L+D  ++  +  ++G  G+
Sbjct: 84  EHVEFVNEDVVEFTKRLKAQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GV 142

Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           P   ++   E +        FG  + L Y
Sbjct: 143 P-LFQDKNPEIHLTLTDTKRFGQFINLYY 170


>gi|119487290|ref|ZP_01621041.1| hypothetical protein L8106_21237 [Lyngbya sp. PCC 8106]
 gi|119455845|gb|EAW36980.1| hypothetical protein L8106_21237 [Lyngbya sp. PCC 8106]
          Length = 172

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 7/97 (7%)

Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            +NI I+  +  +L   L   +G+ +   L  GGA +A +  N+ L+D +I+  +  ++G
Sbjct: 82  DENIEIVSENILELVDSLKQEMGKDIY--LC-GGANLATTLFNANLIDEVIIKLNPFLMG 138

Query: 322 EGGIPSPLEEGYLEKN-FMCVRRDYFGSDVCLEYIGK 357
            G    PL  G +++          + + V   +   
Sbjct: 139 SG---IPLFSGKIQQTALELTHTKIYDNGVVFLFYQP 172


>gi|116671966|ref|YP_832899.1| CMP/dCMP deaminase, zinc-binding [Arthrobacter sp. FB24]
 gi|116612075|gb|ABK04799.1| CMP/dCMP deaminase, zinc-binding protein [Arthrobacter sp. FB24]
          Length = 164

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 19/119 (15%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGC----PHA 55
           M  +     +++ ++R +  +V  +        ++V  DG   G GV           HA
Sbjct: 1   MSTTVTAQDYLAKSIRLATANVLNSGG--PFGAVVVTADGQSFG-GVNRVTATNDPTAHA 57

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           EV A+  A       +  GAT Y + EPC      P C    +   + RVV   D  D 
Sbjct: 58  EVTAIRRACSELGTFDLTGATLYTSCEPC------PMCLASALWARVERVVFAADRHDA 110


>gi|320591187|gb|EFX03626.1| deoxycytidylate deaminase [Grosmannia clavigera kw1407]
          Length = 387

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 45/156 (28%), Gaps = 51/156 (32%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
           S+D  FMS A   +            V C++V++  V+  G     G P           
Sbjct: 227 SWDRYFMSLA-SLAAQRSNCMKR--RVGCVLVREHRVVSTGY---NGTPRGLRNCGEGGC 280

Query: 54  -------------------HAEVQALEEAGEE------ARGATAYVTLEPCSHYGRSPPC 88
                              HAE  AL EAG E            Y    PC        C
Sbjct: 281 GRCNGGFGAGLSLATCLCLHAEENALLEAGRERIPTASLANTILYCDTCPCL------TC 334

Query: 89  AQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +  I++ GI  VV         +         + G+
Sbjct: 335 SIKIVQVGIGEVVYSQGYS---MDADTAAVFREAGV 367


>gi|198464653|ref|XP_001353310.2| GA19978 [Drosophila pseudoobscura pseudoobscura]
 gi|198149816|gb|EAL30813.2| GA19978 [Drosophila pseudoobscura pseudoobscura]
          Length = 159

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 44/135 (32%), Gaps = 36/135 (26%)

Query: 31  VACLIVKDG-IVIGRGVTA----------------YGGCP-----------HAEVQA-LE 61
           V   IV     ++  G                       P           HAE  A L 
Sbjct: 18  VGACIVDQQKRIVAIGYNGLPRNCSDDEFPWSKLSKNSSPDSLEEKKLYVVHAEANAILN 77

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP-DVRVSGRGLQWLS 120
             G    G   Y TL PC+       CA+ II+ GI++V    D     ++     + L 
Sbjct: 78  SNGGSLVGTCLYTTLFPCNE------CAKLIIQSGIQKVFYMSDKYAHKKIYRASRRMLD 131

Query: 121 QKGIIVDRMMESEGK 135
             G++  R + ++ +
Sbjct: 132 SVGVVCTRHVPAQKQ 146


>gi|149918294|ref|ZP_01906785.1| RibD C-terminal domain [Plesiocystis pacifica SIR-1]
 gi|149820820|gb|EDM80229.1| RibD C-terminal domain [Plesiocystis pacifica SIR-1]
          Length = 203

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
            +   L+  L  +G +   V+GG  +  SF+ + L++ +IL    I+IG G       E 
Sbjct: 106 LEPAALMDHLAEQGWSRAYVDGG-LLVQSFLRAGLIEDMILTTIPILIGAG--KRLFGEL 162

Query: 333 YLEKNFMCVRRDYF 346
             + +   VR + F
Sbjct: 163 PGDIDLELVRSEVF 176


>gi|302873074|ref|YP_003841707.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulovorans 743B]
 gi|307688768|ref|ZP_07631214.1| CMP/dCMP deaminase zinc-binding protein [Clostridium
          cellulovorans 743B]
 gi|302575931|gb|ADL49943.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulovorans 743B]
          Length = 167

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 13/95 (13%)

Query: 5  SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
          + D + M  AL   +  +        V  +I K   +IGR      +      HAE++ L
Sbjct: 2  NIDDK-MRIALEIGKKSLEQGEL--PVGAVIFKGDEIIGRAYSSGESKQQFLRHAEMKVL 58

Query: 61 EEAGE------EARGATAYVTLEPCSHYGRSPPCA 89
           E  E      + +    +VTLEPC     +   A
Sbjct: 59 WEVDEQGYSVRDRKNMQLFVTLEPCMMCLGAAMGA 93


>gi|21241410|ref|NP_640992.1| cytosine deaminase [Xanthomonas axonopodis pv. citri str. 306]
 gi|294625645|ref|ZP_06704268.1| cytosine deaminase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|294666814|ref|ZP_06732047.1| cytosine deaminase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|21106745|gb|AAM35528.1| cytosine deaminase [Xanthomonas axonopodis pv. citri str. 306]
 gi|292600068|gb|EFF44182.1| cytosine deaminase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292603398|gb|EFF46816.1| cytosine deaminase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 151

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 51/143 (35%), Gaps = 19/143 (13%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR 68
           A+  +R   GL      +   +   DG ++G G            H E  A  +AG + R
Sbjct: 14  AIAEAR--QGLAEGGIPIGAALYHNDGRLLGCGHNRRVQENDPSVHGETDAFRKAGRQRR 71

Query: 69  --GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
                   TL PC +      C+  + +  I  VVV     +      G+ WL + G+ V
Sbjct: 72  YKDTIMVTTLAPCWY------CSGLVRQFNIGTVVVG----ESVTFQGGIAWLREHGVNV 121

Query: 127 DRMMESEGKIFLHAYLTRQVEKR 149
             +   E    L  Y++   +  
Sbjct: 122 IDLQSQECIDLLGGYISANPDVW 144


>gi|114798136|ref|YP_761455.1| cytidine/deoxycytidylate deaminase family protein [Hyphomonas
           neptunium ATCC 15444]
 gi|114738310|gb|ABI76435.1| cytidine/deoxycytidylate deaminase family protein [Hyphomonas
           neptunium ATCC 15444]
          Length = 146

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 35/105 (33%), Gaps = 19/105 (18%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYGGCPHAEVQALEEAGE--- 65
           M+ A+  +R      +    V  ++V    G ++G G     G       A   A     
Sbjct: 1   MARAMELAREAA--KAGEVPVGAVVVDPETGEIVGEGYNRPVGTHDPSAHAEIIAIRAAA 58

Query: 66  ------EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                    G   +VTLEPC+       CA  I    I R+V   
Sbjct: 59  QKLGNYRLTGLDLHVTLEPCAM------CAGAISFARIGRLVFAA 97


>gi|38640200|ref|NP_944156.1| Cd dCMP deaminase [Aeromonas phage Aeh1]
 gi|33414885|gb|AAQ17928.1| Cd dCMP deaminase [Aeromonas phage Aeh1]
          Length = 182

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 45/142 (31%), Gaps = 55/142 (38%)

Query: 30  SVACLIVKDGIVIGRGVTA-YGGCP----------------------------------- 53
            V  +I KD   I  G      G P                                   
Sbjct: 23  RVGAIISKDDRPISSGYNGTISGQPNCDEVAEENGWAEYVDVPGVGKELRLRQDRSDEYS 82

Query: 54  --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE+ A+  A   G+   GAT Y T+ PC      P CA+ I +  I+ +V 
Sbjct: 83  AWAKSNVIHAEMNAILFAAHGGKSIEGATMYCTMAPC------PECAKTIAQAKIKTLVY 136

Query: 103 CVDDPDVRVSGRGLQWLSQKGI 124
           C D      +    + L++ GI
Sbjct: 137 CEDYN--GSNADWAETLTRSGI 156


>gi|86356205|ref|YP_468097.1| pyrimidine reductase protein [Rhizobium etli CFN 42]
 gi|86280307|gb|ABC89370.1| putative pyrimidine reductase protein (dihydrofolate reductase
           family) [Rhizobium etli CFN 42]
          Length = 185

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           LT L      ++ + G AA+A S + + L+D I +    +++G G 
Sbjct: 106 LTRLKQEDGKTIFIFGSAALADSLLKAGLIDEIRVCVVPVILGGGN 151


>gi|41406377|ref|NP_959213.1| hypothetical protein MAP0279 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41394725|gb|AAS02596.1| hypothetical protein MAP_0279 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 152

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 56/155 (36%), Gaps = 25/155 (16%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----CPHAEVQALE 61
           D   + +AL  +            +  ++V  DG  + R V A         HAE+ AL 
Sbjct: 4   DEDLIRSALAVAATAGPRDVP---IGAVVVGADGTELARAVNAREALGDPTAHAEILALR 60

Query: 62  EA------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            A      G    GAT  VT+EPC        CA  ++   I R+V    +P     G  
Sbjct: 61  AAAAALGDGWRLEGATLAVTVEPC------TMCAGALVLARIARLVFGAWEPKTGAVGSL 114

Query: 116 LQ-----WLSQKGIIVDRMMESEGKIFLHAYLTRQ 145
                   L+ +  +   ++E E    L  +  RQ
Sbjct: 115 WDVVRDRRLNHRPEVRGGVLERECAAPLEGFFARQ 149


>gi|317508050|ref|ZP_07965736.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Segniliparus rugosus ATCC BAA-974]
 gi|316253646|gb|EFV13030.1| cytidine and deoxycytidylate deaminase zinc-binding protein
           [Segniliparus rugosus ATCC BAA-974]
          Length = 196

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 37/96 (38%), Gaps = 17/96 (17%)

Query: 19  RWHVGLTSTNP--SVACLIVK--DGIVIGRG--VTAYGGCPHAEVQALEEAGEEA----- 67
           R  +   + NP      +IV+  D  ++ +G          H EV AL +          
Sbjct: 55  RKAMHAAAGNPRLPFGSVIVRTSDNAMLAKGVNHNTENPMWHGEVVALNDYTARHGNADW 114

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           R  T Y T EPC+       CA  II  GI RVV  
Sbjct: 115 RDVTLYTTGEPCAM------CAGAIIWAGIPRVVWA 144


>gi|119963021|ref|YP_949687.1| riboflavin biosynthesis protein RibD [Arthrobacter aurescens TC1]
 gi|119949880|gb|ABM08791.1| riboflavin biosynthesis protein RibD [Arthrobacter aurescens TC1]
          Length = 185

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF- 346
           T +L+ GG  +A       LVD   L    +++G G    P     ++     V+   F 
Sbjct: 118 TDILI-GGPELAAQAFREGLVDECQLIIVPVLVGGGKKGLP---DGVDARLELVQERTFN 173

Query: 347 GSDVCLEYI 355
           G  + L+Y 
Sbjct: 174 GGAIFLKYR 182


>gi|13476818|ref|NP_108387.1| nitrogen fixation protein gene [Mesorhizobium loti MAFF303099]
 gi|14027579|dbj|BAB53848.1| nitrogen fixation protein gene [Mesorhizobium loti MAFF303099]
          Length = 149

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 31/88 (35%), Gaps = 15/88 (17%)

Query: 30  SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            V  +I     V+ +             HAE+  + EA      E   G   YVTLEPC+
Sbjct: 24  PVGAVIANGSTVVAKAGNRTRELADPTAHAEMLVIREACGKLSSERLTGHDLYVTLEPCA 83

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                  CA  I    +RR+     D  
Sbjct: 84  M------CAGAISFARLRRLYFGAPDEK 105


>gi|283851292|ref|ZP_06368574.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio sp. FW1012B]
 gi|283573242|gb|EFC21220.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio sp. FW1012B]
          Length = 153

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 43/150 (28%), Gaps = 43/150 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
            +   FM  A   +     L      V  + VKD  ++  G                   
Sbjct: 6   PWPEYFMRIAYLVAERSTCLRRK---VGAVAVKDRRILATGYNGSPTGTAHCLDIGCLRE 62

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE   + +    G    GA  Y T +PC        C + +I 
Sbjct: 63  EMGIPSGERHELCRGLHAEQNVIIQCALHGVPIAGADIYCTTQPCLI------CTKMLIN 116

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           C  R +      PD   +    + +++ GI
Sbjct: 117 CQARHIYFSQGYPDALSA----KMIAEAGI 142


>gi|73668581|ref|YP_304596.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase [Methanosarcina
           barkeri str. Fusaro]
 gi|72395743|gb|AAZ70016.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase [Methanosarcina
           barkeri str. Fusaro]
          Length = 223

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 67/173 (38%), Gaps = 22/173 (12%)

Query: 174 ITGFISKNQVH-LLRAQSD--AILVGIGTVLA-----------DDPELTCRLNGLQEHSP 219
            TGF +  +VH  + +     A++VG  T              ++     +   +Q   P
Sbjct: 17  TTGFEANIEVHYKILSSYQPEAMIVGSNTAKTGTQFFCEKIPPENES-DFKKPEIQPDDP 75

Query: 220 M--RIILDPHFKLSLDSKIIKTALLAP--VIIVTENDDPVLALAFRKKNINIIYC--DCR 273
               +I D    L     + + +  +   +++V+E          +++N + I    D  
Sbjct: 76  RAYWLIADSKGILEGLMHVFRRSEFSKDAIVLVSEKTPEAYINYLKERNYDFIRAGADRV 135

Query: 274 DLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           ++++ L I   R G   ++ + G  +    +   LV+ I L  +  ++G+ G 
Sbjct: 136 NIRQALEIANERYGFELVVSDSGGVLNSILLEQGLVEEISLILTPEIVGKNGT 188


>gi|319950227|ref|ZP_08024154.1| bifunctional deaminase-reductase domain protein [Dietzia cinnamea
           P4]
 gi|319436131|gb|EFV91324.1| bifunctional deaminase-reductase domain protein [Dietzia cinnamea
           P4]
          Length = 178

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
              P  + T        L     +++++     D ++ L      G   + V GG  +A 
Sbjct: 68  PEIPTFVFTH-----RQLEAVNDHVSLVAGAPSDHRESLE--SAAGGRDVWVMGGGGLAA 120

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
            F  + ++D +++  + + +G G     L  G  +       R+ 
Sbjct: 121 EFAGAGMLDEVVVSIAPVTLGSGKS---LFGGAFDLELKGCERNR 162


>gi|196041816|ref|ZP_03109105.1| dihydrofolate reductase family protein [Bacillus cereus NVH0597-99]
 gi|196027310|gb|EDX65928.1| dihydrofolate reductase family protein [Bacillus cereus NVH0597-99]
          Length = 173

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D+ +    L  +  + + + GG ++   F  + L+D  ++  +  ++G  G+P   ++
Sbjct: 90  NEDVVEFTKRLKAQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVP-LFQD 147

Query: 332 GYLEKNFMCVRRDYFGSDVCLEY 354
              E +        FG  V L Y
Sbjct: 148 KNPEIHLTLTDTKRFGQFVNLYY 170


>gi|239905201|ref|YP_002951940.1| putative dCMP deaminase [Desulfovibrio magneticus RS-1]
 gi|239795065|dbj|BAH74054.1| putative dCMP deaminase [Desulfovibrio magneticus RS-1]
          Length = 153

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 41/146 (28%), Gaps = 43/146 (29%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV---------------------- 46
            FM  A   +     L      V  + V+D  ++  G                       
Sbjct: 10  YFMRIAYLVAERSTCLRRK---VGAVAVRDRRILATGYNGSPTGTAHCLDIGCLREKLGI 66

Query: 47  -----TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE   + +    G    GA  Y T +PC        C + +I   + 
Sbjct: 67  PSGERHELCRGLHAEQNVIIQCALHGVPIAGADIYCTTQPCLI------CTKMLINSQVN 120

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGI 124
            +      PD   +    + +++ GI
Sbjct: 121 HIYFSQGYPDPLSA----EMIAEAGI 142


>gi|296166141|ref|ZP_06848586.1| cytosine deaminase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898550|gb|EFG78111.1| cytosine deaminase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 150

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 58/149 (38%), Gaps = 17/149 (11%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQALEEA 63
           A  M  AL  +R  +      P  A L   DG+++GRG       G P  HAEV A   A
Sbjct: 6   AAMMDVALDEARAGLAE-GGIPIGAALFTADGVLLGRGRNRRVQRGDPSLHAEVDAFRAA 64

Query: 64  G--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           G   + R      TL PC +      C+  + +  I  ++V     + R    G  WL+ 
Sbjct: 65  GRQRDYRSTVMVTTLAPCWY------CSGLVRQFNIGSLLVG----ESRTFTGGHDWLAA 114

Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
            GI V  + +      + A++    +   
Sbjct: 115 NGISVTVLDDERCATMMAAFIAEHPDLWH 143


>gi|288920069|ref|ZP_06414388.1| bifunctional deaminase-reductase domain protein [Frankia sp. EUN1f]
 gi|288348552|gb|EFC82810.1| bifunctional deaminase-reductase domain protein [Frankia sp. EUN1f]
          Length = 188

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-KNFMCVRRDYF-GSDVC 351
           GGA +A + + + L+D   +    ++ G G   +P         N   V    F G  V 
Sbjct: 125 GGATLAGAALRAGLIDEYAVVTHPVLTGGG---TPFFTALDSWVNLNLVETRTFPGGVVL 181

Query: 352 LEY 354
             Y
Sbjct: 182 TRY 184


>gi|47568101|ref|ZP_00238806.1| RibD C-terminal domain [Bacillus cereus G9241]
 gi|47555255|gb|EAL13601.1| RibD C-terminal domain [Bacillus cereus G9241]
          Length = 173

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           GG  +   F  + L+D  ++  +  ++G  G+P   ++   E N        FG  V L 
Sbjct: 112 GGGELLREFFKNNLIDEYVVTITPHILGS-GVP-LFQDKNPEINLTLTDTKRFGQFVNLY 169

Query: 354 Y 354
           Y
Sbjct: 170 Y 170


>gi|66812266|ref|XP_640312.1| carbohydrate-binding domain-containing protein [Dictyostelium
           discoideum AX4]
 gi|60468325|gb|EAL66333.1| carbohydrate-binding domain-containing protein [Dictyostelium
           discoideum AX4]
          Length = 383

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 23/112 (20%)

Query: 3   VSSFDA----RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP-HAE 56
           +S  D     ++M  A+  +         N      IV K+G ++  G    G    H E
Sbjct: 44  LSPDDQQFHAKYMRIAINVA------VENNSKFGAAIVHKNGTLMCTGANTGGSRMYHGE 97

Query: 57  VQALEEAGEEARGAT-----AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           V+A+    +    AT      Y T EPC      P C+   +     +V+  
Sbjct: 98  VKAIMNCTDLYGKATWEDHYLYTTGEPC------PMCSAAAMWTKFDKVIFA 143


>gi|322694880|gb|EFY86699.1| nucleoside deaminase [Metarhizium acridum CQMa 102]
          Length = 252

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 52/191 (27%), Gaps = 53/191 (27%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPS----VACLIVKD-----GIVIGRGVTAYG-GCP--HA 55
             +M  A       +   + NP        +IV       G ++  G      G P  H 
Sbjct: 41  HYWMRRA----NAALFEVTGNPCPTQAFGTVIVNHTAGGLGELVCIGANDVASGNPTLHG 96

Query: 56  EVQALEEA--------------GEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
           E  A+                 G EA       T Y   EPC      P CA  I   G 
Sbjct: 97  ETAAITNCSAILTDPNGPYKLSGHEALKAWADLTLYTNAEPC------PMCASAIRWSGF 150

Query: 98  RRVVVCVDDPDVRVSGRGLQWLSQ-------------KGIIVDRMMESEGKIFLHAYLTR 144
           + +V       +R     +  L               +  I   ++E+E   +     TR
Sbjct: 151 KELVFGTGIKSLRAYNWKMMTLPAKDLFKYTTELPTGRTTIAGGVLENETDPYFKWQYTR 210

Query: 145 QVEKRSHITLK 155
             +       K
Sbjct: 211 GTDCPPGCKRK 221


>gi|212224167|ref|YP_002307403.1| carbon-monoxide dehydrogenase, catalytic subunit [Thermococcus
           onnurineus NA1]
 gi|212009124|gb|ACJ16506.1| carbon-monoxide dehydrogenase, catalytic subunit [Thermococcus
           onnurineus NA1]
          Length = 630

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 12/109 (11%)

Query: 28  NPSV----ACL------IVKDGIVIGRGVTAYGGCPHA--EVQALEEAGEEARGATAYVT 75
           NP V      +      I +D +V+G G        H     +A E AG   +     + 
Sbjct: 451 NPRVKQNYGHVTLAKELIKRDILVVGTGCWGIAAAMHGLLTPEAAEMAGPGLKAVCEALG 510

Query: 76  LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           + PC H G    C++ ++        + VD  D+ V+G   +W+S+K +
Sbjct: 511 IPPCLHMGSCVDCSRILLVLSALANALNVDISDLPVAGSAPEWMSEKAV 559


>gi|22002566|gb|AAM82717.1| unknown [Synechococcus elongatus PCC 7942]
          Length = 222

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 9/130 (6%)

Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA-------DDPEL-TCRL 211
            D  I  A            + ++  + AQSDA+L+G  T+ A        +P+L   R 
Sbjct: 1   MDGRIAEAAAVPARFGSAQDQRRLETIVAQSDAVLMGAATLRAYGTCRSVTNPQLQQQRR 60

Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD 271
           +  Q   P++II     ++    +  +   +   ++ TE            + + I    
Sbjct: 61  DRGQSPQPVQIICSASGQIEPACRFFQQP-VPRWLLTTEQGRDRWRQESGFEAVLIAGQT 119

Query: 272 CRDLKKLLTI 281
             D ++    
Sbjct: 120 QLDWEQAFAQ 129


>gi|111223988|ref|YP_714782.1| putative DNA binding protein [Frankia alni ACN14a]
 gi|111151520|emb|CAJ63239.1| Putative DNA binding protein [Frankia alni ACN14a]
          Length = 232

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                 PV ++T    P L +A       +       L+       GR V    + GG  
Sbjct: 97  DPPFHTPVFVLTHERRPDLVMAGGTTFHFLSASPEEALQLAAGAAGGRDVR---IGGGPT 153

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323
           V   F+ + L+D++ +  + I++G G
Sbjct: 154 VVRDFLRAGLIDALHVAIAPILLGGG 179


>gi|209547815|ref|YP_002279732.1| bifunctional deaminase-reductase domain protein [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209533571|gb|ACI53506.1| bifunctional deaminase-reductase domain protein [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 187

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 23/46 (50%)

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           LT L      ++ + G A +A S + + L+D + +    +++G G 
Sbjct: 108 LTRLKQEDGKTIFIFGSAELADSLLKAGLIDEVRVCVVPVILGGGN 153


>gi|291005926|ref|ZP_06563899.1| deaminase-reductase domain-containing protein [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 203

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 10/88 (11%)

Query: 274 DLKKL--LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           D + +  +     R    L+V GG  +A     +RLVD   L+ + +V+G G    P   
Sbjct: 113 DPEAVHRMKAAAKRD---LIV-GGPGLAEHAFRARLVDECHLFVTPVVVGGGTRALP--- 165

Query: 332 GYLEKNFMCVRRDYFGS-DVCLEYIGKN 358
             L  +   +    F +  V L Y  +N
Sbjct: 166 DGLRLDLELLAERRFDAGTVYLRYRVRN 193


>gi|113475737|ref|YP_721798.1| CMP/dCMP deaminase [Trichodesmium erythraeum IMS101]
 gi|110166785|gb|ABG51325.1| CMP/dCMP deaminase, zinc-binding [Trichodesmium erythraeum IMS101]
          Length = 180

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 48/151 (31%), Gaps = 40/151 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCPHAEVQ----- 58
           S+D  F+  A + +      T     V  +IVKD  V+  G      G  H   Q     
Sbjct: 10  SWDEYFLMIA-KLA--ATRSTCLAFPVGAVIVKDKQVLATGYNGPPSGSNHCTSQGFCYP 66

Query: 59  ---------AL---------------EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                    AL                + G    GA  YVTLEPC +      C + II 
Sbjct: 67  ELSSCDASKALPSRSVHAEANAIAQAAKHGICTNGAIIYVTLEPCIY------CLKLIIS 120

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            GI+ V       +            Q G++
Sbjct: 121 SGIKEVFY-ETSFNSGGKAALRDLFIQDGLV 150


>gi|325964675|ref|YP_004242581.1| cytosine/adenosine deaminase [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470762|gb|ADX74447.1| cytosine/adenosine deaminase [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 164

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 43/121 (35%), Gaps = 23/121 (19%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-------GCP 53
           M  +    +F++ ++R +  +V  +        +IV      GR                
Sbjct: 1   MSTTVTAEQFLARSIRLATANVLNSGG--PFGAMIVTAD---GRAFDGVNRVTADNDPTA 55

Query: 54  HAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAEV A+  A       +  GAT Y + EPC      P C    +   + RVV   D  D
Sbjct: 56  HAEVTAIRTACRELGTFDLSGATLYTSCEPC------PMCLASALWARVERVVFAADRHD 109

Query: 109 V 109
            
Sbjct: 110 A 110


>gi|219113417|ref|XP_002186292.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583142|gb|ACI65762.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 180

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 56/185 (30%), Gaps = 43/185 (23%)

Query: 11  MSAALRFSRWHV--GLTSTNPSVACLIV----KDGIVIGRGVTA----YGGCPHAEVQAL 60
           M  ALR ++  +  G       V C+IV       +V+  G         G    E Q +
Sbjct: 1   MRQALRVAKAALDIGEV----PVGCVIVMPTETGPVVVSHGANQVNATRDGTWKHEKQNI 56

Query: 61  EE-----------------AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
            E                   EE +    YVT EPC        CA  + +  I +V   
Sbjct: 57  REGTGEWRNAYGWGSGRRFKPEELKKCRLYVTCEPCIM------CAAALAQVQISKVYFG 110

Query: 104 VDDPDVRVSGRGLQWLS-----QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
             +      G  L           G  +   M+E +    L ++  R+         K  
Sbjct: 111 CRNDKFGGCGSILHLHKDHPPHHAGYPVSGGMLEDDAVGLLRSFYNRENFHAPEDKRKRK 170

Query: 158 VSQDN 162
             +D+
Sbjct: 171 GGKDD 175


>gi|166710521|ref|ZP_02241728.1| cytosine deaminase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 151

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 19/143 (13%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR 68
           A+  +R   GL      +   +   DG ++G G            H E  A  +AG + R
Sbjct: 14  AITEAR--QGLAEGGIPIGAALYHNDGRLLGCGHNRRVQENDPSVHGETDAFRKAGRQRR 71

Query: 69  --GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
                   TL PC +      C+  + +  I  VVV     +      G+ WL + G+ V
Sbjct: 72  YKDTIMVTTLAPCWY------CSGLVRQFNIGTVVVG----ESVTFQGGIAWLREHGVNV 121

Query: 127 DRMMESEGKIFLHAYLTRQVEKR 149
             +   E    L  Y++      
Sbjct: 122 IDLQSQECIDLLGGYISANPHVW 144


>gi|118589011|ref|ZP_01546418.1| bifunctional deaminase-reductase, C-terminal [Stappia aggregata IAM
           12614]
 gi|118438340|gb|EAV44974.1| bifunctional deaminase-reductase, C-terminal [Stappia aggregata IAM
           12614]
          Length = 178

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 60/178 (33%), Gaps = 45/178 (25%)

Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR---AQSDAILVGIGT---VLADDPE 206
            + IA S D  I  +      +       + H      A  D I++G GT   + A  P 
Sbjct: 5   HVFIATSLDGFIARSDGDIAWLLERDDPAEDHGYDDFIADIDVIMMGRGTFEKMRAVRP- 63

Query: 207 LTCRLNGLQEHSPMRIILDPHF-KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
                     H P+ ++L     +  L   ++    +A                      
Sbjct: 64  -------WPYHRPV-VVLSSTLTRSDLSEDLLDKVRVA---------------------- 93

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
                     ++ + +L   G   + ++GG  +  SF+ + L+  +++    +++GEG
Sbjct: 94  ------NFSPEEAMRMLQSEGHRKVYIDGG-LLIQSFLKAGLIADMVITSVPVLLGEG 144


>gi|307822313|ref|ZP_07652545.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Methylobacter tundripaludum SV96]
 gi|307736879|gb|EFO07724.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Methylobacter tundripaludum SV96]
          Length = 280

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 62/218 (28%), Gaps = 22/218 (10%)

Query: 150 SHITLKIAVSQDNMIGMAGCGS-----VPITGFISKNQVHLLRAQSDAILVGIGTVLA-- 202
             +      S D  I +            IT          L AQ+D I+   G +    
Sbjct: 38  PFVYANFLSSLDGRIALEDTVQGTYIPKHITTASDFGLFMELHAQADCIITHGGYMRTLS 97

Query: 203 -----------DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251
                      D   +  R N   +  P  II        LD   +K    A  I    N
Sbjct: 98  EGRLGNILQVRDKELVEWRRNNGLKPQPAVIIASASLNFPLD-NSLKEHGQAVYIATGSN 156

Query: 252 DDPVLALAFRKKNINIIYCDCRDLKK---LLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
            DP     ++     I++     +     L+  L      ++ +  G  +  + I  + +
Sbjct: 157 ADPDRIRYWQDLGYPILFTGEDQMVHGGPLIDALSSLSYRTIYLVAGPQMLDTVIREKQL 216

Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
             + L  +  +IG     + L    L      +    +
Sbjct: 217 SRLYLTITHQLIGGKDFRTLLTGTTLGAEGNLILEAMY 254


>gi|29566057|ref|NP_817627.1| gp38 [Mycobacterium phage Bxz2]
 gi|29424782|gb|AAN01792.1| gp38 [Mycobacterium phage Bxz2]
 gi|323126199|gb|ADX30664.1| gp38 [Mycobacterium phage Wonder]
          Length = 127

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 41/129 (31%), Gaps = 40/129 (31%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP---------- 53
           ++D  F+  A   +       S    V  ++VKD  V   G   A  G P          
Sbjct: 4   TWDEYFLEIAKTVAIRSDCERS---QVGAVVVKDRRVRATGYNGAPAGRPGCSTCPRRTS 60

Query: 54  -------------------HAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFII 93
                              HAE  AL     E+  GAT Y+T  PC        C + I 
Sbjct: 61  GAIPGVSDYDSGVGRCVAVHAEANALLYCDREDLIGATLYITRAPCDG------CRKLID 114

Query: 94  ECGIRRVVV 102
             GI  V+ 
Sbjct: 115 AAGIVNVIY 123


>gi|332703476|ref|ZP_08423564.1| CMP/dCMP deaminase, zinc-binding protein [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553625|gb|EGJ50669.1| CMP/dCMP deaminase, zinc-binding protein [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 152

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 45/150 (30%), Gaps = 43/150 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
            +   FM  A   +     L      V  + VKD  +   G                   
Sbjct: 6   PWPEYFMKIAYLVAERSTCLRRK---VGAIAVKDKRIAATGYNGVPSGLAHCEDVGCLRE 62

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE   + +A   G +  GA+ Y T +PC        C + +I 
Sbjct: 63  KMGIPSGQRHELCRGLHAEQNVIIQAATHGVDISGASIYCTTQPCLI------CTKMLIN 116

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
            G++ +      PD    G     L++ G+
Sbjct: 117 VGVKEIWFAEAYPDELSQG----MLTEAGV 142


>gi|297618439|ref|YP_003703598.1| CMP/dCMP deaminase zinc-binding protein [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297146276|gb|ADI03033.1| CMP/dCMP deaminase zinc-binding protein [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 153

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 47/129 (36%), Gaps = 40/129 (31%)

Query: 31  VACLIVKDGIVIGRGVTAYG----------------GCP-----------HAEVQALEEA 63
           V  L+VKD  +I  G                     G P           HAE  A+  A
Sbjct: 30  VGALLVKDERIIATGYNGAPQGLRHCLEAGCLREEKGIPSGVRYELCRGVHAEQNAIINA 89

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G     +  Y T +PC        CA+ +I  GI++V+   D  D       LQ+L 
Sbjct: 90  ARYGVSTLDSVLYCTDQPCI------LCARMLINAGIKKVIHQGDFRD----EVALQFLE 139

Query: 121 QKGIIVDRM 129
           + GI V ++
Sbjct: 140 EAGIEVVKV 148


>gi|134102775|ref|YP_001108436.1| deaminase-reductase domain-containing protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133915398|emb|CAM05511.1| bifunctional deaminase-reductase domain protein [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 196

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 10/88 (11%)

Query: 274 DLKKL--LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           D + +  +     R    L+V GG  +A     +RLVD   L+ + +V+G G    P   
Sbjct: 106 DPEAVHRMKAAAKRD---LIV-GGPGLAEHAFRARLVDECHLFVTPVVVGGGTRALP--- 158

Query: 332 GYLEKNFMCVRRDYFGS-DVCLEYIGKN 358
             L  +   +    F +  V L Y  +N
Sbjct: 159 DGLRLDLELLAERRFDAGTVYLRYRVRN 186


>gi|123448972|ref|XP_001313210.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121895085|gb|EAY00281.1| hypothetical protein TVAG_324000 [Trichomonas vaginalis G3]
          Length = 192

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 69/173 (39%), Gaps = 37/173 (21%)

Query: 189 QSDAILVGIGTVLA---DDPELTCRLNGLQE--------HSPMRIILDPHFK-------- 229
           ++DA + G  T L     +P++      + E         SP  ++LD   K        
Sbjct: 21  KADAAICGSNTALEMGYQNPDINSERTDVPEGNFIAKDIKSPFLVVLDSTVKVGWKQGYA 80

Query: 230 ---LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVG 284
              LS  + II+        +++E   P     FR+ NI+ I    D  DL   +  L  
Sbjct: 81  NKPLSPTANIIE--------VLSEKASPQYKNYFRRLNISYIIAGKDHVDLVPAVRKLKN 132

Query: 285 -RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG--EGGIPSPLEEGYL 334
             G+  L V GGA +  S + S + + + +  S  V+G  EG  P  L  G +
Sbjct: 133 VFGIKVLGVLGGATLCWSVVKSGICNELSICLS--VVGEEEGKKPRFLRSGDV 183


>gi|294056409|ref|YP_003550067.1| bifunctional deaminase-reductase domain protein [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615742|gb|ADE55897.1| bifunctional deaminase-reductase domain protein [Coraliomargarita
           akajimensis DSM 45221]
          Length = 174

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 67/210 (31%), Gaps = 42/210 (20%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVP---ITGFISKNQVH-LLRAQSDAILVGIGTVLADDP 205
            H+   +AVS D  I            I      +          DA+L+G  T      
Sbjct: 1   MHVIAYLAVSLDGYIADRDGSVEWLNAIPNPDGDDYGFAEFMGSVDALLMGANTFR---- 56

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
                            +++       D          PV + + +      L       
Sbjct: 57  -----------------VVESFGVWPYD---------KPVFVASRS-----ILEPPPGYA 85

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           + I     ++  LLT +   G   + V+GG  +  + + + L+  +IL +  I +G+ GI
Sbjct: 86  DKITLMNGEVSDLLTQISALGYERIYVDGG-QIIQAAMRANLLSELILTQIPISLGD-GI 143

Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           P    +   ++ F   + +  G  +   + 
Sbjct: 144 P-LFPKSEQQRQFTHTKTEVVGPGLVKSWY 172


>gi|149021461|gb|EDL78924.1| similar to 6030466N05Rik protein, isoform CRA_b [Rattus norvegicus]
          Length = 175

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 34/117 (29%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        +  V   IV  +  ++G G                  
Sbjct: 20  EWPEYFMAVAFLSAQRSK---DPSSQVGACIVNTENKIVGIGYNGMPNGCSDDLLPWRRT 76

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
                 T Y    HAE+ A+  +   + +G + YV L PC+       CA+ II+ G
Sbjct: 77  AENKLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNE------CAKLIIQAG 127


>gi|94969492|ref|YP_591540.1| bifunctional deaminase-reductase-like [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551542|gb|ABF41466.1| bifunctional deaminase-reductase-like protein [Candidatus
           Koribacter versatilis Ellin345]
          Length = 214

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P  ++T +  P L +        +       L++      G+ V    + GGAA    +I
Sbjct: 105 PTFVLTHHARPSLEMKGGTTFHFVTEGPEIALQRAKEAAQGKDVR---IGGGAATIRQYI 161

Query: 304 NSRLVDSIILYRSQIVIGEG 323
            + LVD + L  S +++GEG
Sbjct: 162 AAGLVDELHLALSPVLLGEG 181


>gi|7546295|pdb|1CZ3|A Chain A, Dihydrofolate Reductase From Thermotoga Maritima
 gi|7546296|pdb|1CZ3|B Chain B, Dihydrofolate Reductase From Thermotoga Maritima
 gi|7546297|pdb|1D1G|A Chain A, Dihydrofolate Reductase From Thermotoga Maritima
 gi|7546298|pdb|1D1G|B Chain B, Dihydrofolate Reductase From Thermotoga Maritima
          Length = 168

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGY 333
              ++  L G+G   + V GG  V   F+  +LVD + +     V G  GIP   E EGY
Sbjct: 82  PADVVKFLEGKGYERVAVIGGKTVFTEFLREKLVDELFVTVEPYVFG-KGIPFFDEFEGY 140

Query: 334 LEKNFMCVRR 343
                + +RR
Sbjct: 141 FPLKLLEMRR 150


>gi|2842628|sp|Q60034|DYR_THEMA RecName: Full=Dihydrofolate reductase; Short=DHFR
 gi|1835266|emb|CAA71903.1| dihydrofolate reductase [Thermotoga maritima MSB8]
 gi|2582824|emb|CAA57437.1| dihydrofolate reductase [Thermotoga maritima MSB8]
          Length = 169

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGY 333
              ++  L G+G   + V GG  V   F+  +LVD + +     V G  GIP   E EGY
Sbjct: 83  PADVVKFLEGKGYERVAVIGGKTVFTEFLREKLVDELFVTVEPYVFG-KGIPFFDEFEGY 141

Query: 334 LEKNFMCVRR 343
                + +RR
Sbjct: 142 FPLKLLEMRR 151


>gi|15644389|ref|NP_229441.1| dihydrofolate reductase [Thermotoga maritima MSB8]
 gi|4982214|gb|AAD36708.1|AE001806_18 dihydrofolate reductase [Thermotoga maritima MSB8]
          Length = 172

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGY 333
              ++  L G+G   + V GG  V   F+  +LVD + +     V G  GIP   E EGY
Sbjct: 86  PADVVKFLEGKGYERVAVIGGKTVFTEFLREKLVDELFVTVEPYVFG-KGIPFFDEFEGY 144

Query: 334 LEKNFMCVRR 343
                + +RR
Sbjct: 145 FPLKLLEMRR 154


>gi|242003371|ref|XP_002422714.1| Deoxycytidylate deaminase, putative [Pediculus humanus corporis]
 gi|212505536|gb|EEB09976.1| Deoxycytidylate deaminase, putative [Pediculus humanus corporis]
          Length = 172

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 34/128 (26%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV----------------------- 46
           M+ A   ++        +  V   IV D   ++G G                        
Sbjct: 1   MANAFLAAKRSK---DPSTQVGACIVDDDKKIVGIGYNGFPIGCDDDDFPWTKNSDSPLE 57

Query: 47  TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
             +    HAE+ A L +     +G+  YV L PC+       CA+FII+ GI+ V+   D
Sbjct: 58  NKHFYVCHAEMNAILNKNSANIKGSKIYVVLFPCNE------CAKFIIQSGIKEVIYMSD 111

Query: 106 DPDVRVSG 113
               R+  
Sbjct: 112 KHHERLQT 119


>gi|206895932|ref|YP_002246819.1| tRNA-specific adenosine deaminase [Coprothermobacter proteolyticus
           DSM 5265]
 gi|206738549|gb|ACI17627.1| tRNA-specific adenosine deaminase [Coprothermobacter proteolyticus
           DSM 5265]
          Length = 154

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 42/142 (29%), Gaps = 43/142 (30%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTST-----------------NPSVACLIVKDGIVIG 43
           M +   D ++M  AL+ +                          N             + 
Sbjct: 1   MTILGDDEKYMVEALKEAVKAYNEGEVPVGVVVVFNGVVVGRGYN-------------LR 47

Query: 44  RGVTAYGGCPHAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                     HAEV AL +A          GAT YVTLEPC        C   ++   + 
Sbjct: 48  EQSHDP--TAHAEVVALRDAAAHMGRWNLSGATVYVTLEPCLM------CCYALVLARVD 99

Query: 99  RVVVCVDDPDVRVSGRGLQWLS 120
           RVV    D         + +LS
Sbjct: 100 RVVFGATDQKAGALVTHMDFLS 121


>gi|294670|gb|AAA90930.1| putative [Gordonia rubripertincta]
          Length = 175

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 49/156 (31%), Gaps = 26/156 (16%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVAC-----LIVKDGIVIGRGVTAY----GGCPHA 55
           + +   ++ AL  +   +                +   DG ++ RG            H 
Sbjct: 27  AAETAMLAVALEEAHIGLAE-------GASDWRSIFTLDGELVSRGHNQRIQDNDPSSHG 79

Query: 56  EVQALEEAGEEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           E  A   AG     R      TL PC +      C   + + G  +VV+           
Sbjct: 80  ETDAFRNAGRHTTWRDKILVTTLAPCWY------CTGMVRQFGFAKVVMGETVNQPP--P 131

Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
            G  WL + G+ +  +   E    L +Y  R+ +  
Sbjct: 132 HGYDWLRELGVDIVDLGSPECIELLASYSAREPDAW 167


>gi|328773882|gb|EGF83919.1| hypothetical protein BATDEDRAFT_84642 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 594

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 22/130 (16%)

Query: 10  FMSAALRFSRWHVGLTSTNP-------SVACLIVKD-GIVIGRGVTAYGGCPHAEVQALE 61
           FM  AL      +   S+ P          C++V     VI    T   G  HA V+A+ 
Sbjct: 49  FMLMAL---WMELYPCSSTPKTSQVVRPTGCVLVDTRDRVIALEST---GEAHAIVRAIL 102

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV--CVDDPDVRVSGRGLQWL 119
               + RG   YV+  PC+       C + +++ GIR++      +      +   L+  
Sbjct: 103 RCPYDPRGCDIYVSRFPCAM------CTKVMVQAGIRKIYYFPAQNWEMDWAAHCELEMQ 156

Query: 120 SQKGIIVDRM 129
             +G +   +
Sbjct: 157 IDQGFLSPEV 166


>gi|156741045|ref|YP_001431174.1| deaminase-reductase domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156232373|gb|ABU57156.1| bifunctional deaminase-reductase domain protein [Roseiflexus
           castenholzii DSM 13941]
          Length = 175

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 43/200 (21%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA---DDP 205
              I  ++  S D  I      +  +      +    L AQ D +L+G  T  A   DDP
Sbjct: 1   MRRIRYQVVCSLDGYIASPNGEADWVPNEPDIDFA-ALFAQFDTLLMGRKTYEALSLDDP 59

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
                    +      I+     +    S+           IV E               
Sbjct: 60  AYGHLFADKEI-----IVFSRTLRFQEHSR---------ATIVAE--------------- 90

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             +  +  D       L  +    + + GG  +  + +    VD++ L  + +++ +GG 
Sbjct: 91  --LTLNYVD------QLRRQPGRDIWLFGGGELFRALLELERVDTVELAIAPVLL-DGGA 141

Query: 326 PSPLEEGYLEKNFMCVRRDY 345
           P  L    + +    + +  
Sbjct: 142 P-FLPSPTVRRRLNLIDQRR 160


>gi|89096823|ref|ZP_01169714.1| hypothetical protein B14911_18000 [Bacillus sp. NRRL B-14911]
 gi|89088203|gb|EAR67313.1| hypothetical protein B14911_18000 [Bacillus sp. NRRL B-14911]
          Length = 189

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
            D+++  T   A  +I       V + A  K   N+++ +  D+K+ +  L       + 
Sbjct: 66  PDTEVSDTEKEAWELI-HSKKKYVFSRAQNKSENNVLFIN-EDIKEEIIKLKNEPGKDIW 123

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-NFMCVRRDYFGSDV 350
           + GGA++  +FIN +LVD   L    +V+GEG    PL     ++ N        F S V
Sbjct: 124 LYGGASLITTFINLKLVDEFRLSVHPVVLGEGK---PLFTDIKQRVNLKLAETKKFSSGV 180

Query: 351 C 351
            
Sbjct: 181 V 181


>gi|255524583|ref|ZP_05391537.1| bifunctional deaminase-reductase domain protein [Clostridium
           carboxidivorans P7]
 gi|296185767|ref|ZP_06854174.1| riboflavin biosynthesis protein RibD [Clostridium carboxidivorans
           P7]
 gi|255511736|gb|EET88022.1| bifunctional deaminase-reductase domain protein [Clostridium
           carboxidivorans P7]
 gi|296049595|gb|EFG89022.1| riboflavin biosynthesis protein RibD [Clostridium carboxidivorans
           P7]
          Length = 189

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 4/115 (3%)

Query: 238 KTALLAPVI-IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
            +     +  +V   +  V + A    +   I+ +   ++++   L  +    + + GGA
Sbjct: 69  DSDSEKEIWKLVHSKEKYVFSRAQIDTDNQAIFINENIIEEV-NKLKNKPGKDIWLYGGA 127

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           ++  +FIN  LVD   L    +++GEG       +     N   V    F S V 
Sbjct: 128 SLITTFINLGLVDEFRLSIHPVILGEG--KPLFIDIKQRLNLNMVNTRTFSSGVV 180


>gi|326383561|ref|ZP_08205247.1| hypothetical protein SCNU_11520 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326197645|gb|EGD54833.1| hypothetical protein SCNU_11520 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 201

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 3/61 (4%)

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           G   A + I + +VD    +    ++G G    P        +   V    FG    L Y
Sbjct: 142 GPTTAAAAIRAGMVDDYRFFVVPKIVGGGLRALP---DDARLDLRLVEHRTFGDTAYLHY 198

Query: 355 I 355
            
Sbjct: 199 R 199


>gi|227822764|ref|YP_002826736.1| putative reductase protein [Sinorhizobium fredii NGR234]
 gi|227341765|gb|ACP25983.1| putative reductase protein [Sinorhizobium fredii NGR234]
          Length = 176

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-LE 353
           G  +A S     L+D   LY   +V+G G    PL           V  D  G DV  L 
Sbjct: 117 GPELAGSLTKLGLIDEYRLYLHPVVLGRGK---PLFAD-PRPPLRLVASDRIGEDVIRLT 172

Query: 354 YIG 356
           Y+ 
Sbjct: 173 YVP 175


>gi|118580021|ref|YP_901271.1| CMP/dCMP deaminase [Pelobacter propionicus DSM 2379]
 gi|118502731|gb|ABK99213.1| CMP/dCMP deaminase, zinc-binding protein [Pelobacter propionicus
           DSM 2379]
          Length = 155

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 42/132 (31%), Gaps = 40/132 (30%)

Query: 31  VACLIVKDGIVIGRGV---------------------------TAYGGCPHAEVQALEEA 63
           V  L+VKD  ++  G                                   HAE  A+ +A
Sbjct: 28  VGALLVKDRNILATGYNGAPSGISHCSEAGCLRERLNVPSGERHELCRGLHAEQNAIIQA 87

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G    GAT Y T  PC        C + +I  GIRRVV      D        + ++
Sbjct: 88  ARHGVNIDGATLYCTTMPCVI------CTKMLINAGIRRVVFDEGYADDLAR----EMIA 137

Query: 121 QKGIIVDRMMES 132
           + GI V      
Sbjct: 138 ESGIKVVHFQRD 149


>gi|288916305|ref|ZP_06410684.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EUN1f]
 gi|288352284|gb|EFC86482.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EUN1f]
          Length = 136

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 39/131 (29%), Gaps = 43/131 (32%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------------- 48
            +D  F+  A   +            V  ++VK   V   G                   
Sbjct: 8   DWDTYFLDIARAVAARGDCTRR---QVGAVLVKGSRVRSTGYNGTAPGRPGCLAGACPRG 64

Query: 49  -------YGGCP-------HAEVQALEEA--GEEARGATAYVTLEPCSHYGRSPPCAQ-F 91
                    G P       HAE  AL  A   ++  G+T Y+T EPC          Q  
Sbjct: 65  RKTTVEVPAGSPYDDCIATHAEANALLYADGRQDTEGSTLYLTTEPC-------AWCQKL 117

Query: 92  IIECGIRRVVV 102
           I   G+ +VV 
Sbjct: 118 IRAAGVAQVVW 128


>gi|303245769|ref|ZP_07332052.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio fructosovorans JJ]
 gi|302493032|gb|EFL52897.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio fructosovorans JJ]
          Length = 154

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 42/146 (28%), Gaps = 43/146 (29%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV---------------------- 46
            FM  A   +     L      V  + V+D  ++  G                       
Sbjct: 10  YFMRIAYLVAERSTCLRRK---VGAVAVRDRRILATGYNGSPSGTAHCLDIGCLREQMGI 66

Query: 47  -----TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE   + +    G    GA  Y T +PC        C + +I C I 
Sbjct: 67  PSGERHELCRGLHAEQNVIIQCALHGVPIAGADIYCTTQPCLI------CTKMLINCQIN 120

Query: 99  RVVVCVDDPDVRVSGRGLQWLSQKGI 124
            +      PD   +    + +++ GI
Sbjct: 121 NIYFSQGYPDPLSA----KMIAEAGI 142


>gi|118464690|ref|YP_879612.1| cytidine and deoxycytidylate deaminase family protein
           [Mycobacterium avium 104]
 gi|254773334|ref|ZP_05214850.1| cytidine and deoxycytidylate deaminase family protein
           [Mycobacterium avium subsp. avium ATCC 25291]
 gi|118165977|gb|ABK66874.1| cytidine and deoxycytidylate deaminase family protein
           [Mycobacterium avium 104]
          Length = 152

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 56/155 (36%), Gaps = 25/155 (16%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----CPHAEVQALE 61
           D   + +AL  +            +  ++V  DG  + R V A         HAE+ AL 
Sbjct: 4   DEDLIRSALAVAATAGPRDVP---IGAVVVGADGTELARAVNAREALGDPTAHAEILALR 60

Query: 62  EA------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            A      G    GAT  VT+EPC        CA  ++   I R+V    +P     G  
Sbjct: 61  AAAAALGDGWRLEGATLAVTVEPC------TMCAGALVLARIARLVFGAWEPKTGAVGSL 114

Query: 116 LQ-----WLSQKGIIVDRMMESEGKIFLHAYLTRQ 145
                   L+ +  +   ++E E    L  +  RQ
Sbjct: 115 WDVVRDRRLNHRPEVRGGVLERECAALLEGFFARQ 149


>gi|325915009|ref|ZP_08177339.1| cytosine/adenosine deaminase [Xanthomonas vesicatoria ATCC 35937]
 gi|325538779|gb|EGD10445.1| cytosine/adenosine deaminase [Xanthomonas vesicatoria ATCC 35937]
          Length = 151

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 19/143 (13%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR 68
           A+  +R   GL      +   +   DG ++G G            H E  A  +AG + R
Sbjct: 14  AIAEAR--QGLAEGGIPIGAALYHNDGRLLGCGHNRRVQENDPSVHGETDAFRKAGRQRR 71

Query: 69  --GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
                   TL PC +      C+  + +  I  VVV     +      G+ WL + G+ V
Sbjct: 72  YKDTIMVTTLAPCWY------CSGLVRQFNIGTVVVG----ESVTFQGGIAWLREHGVNV 121

Query: 127 DRMMESEGKIFLHAYLTRQVEKR 149
             +   E    L  Y+    +  
Sbjct: 122 IDLQSQECIDLLGGYIAANPDVW 144


>gi|290959146|ref|YP_003490328.1| deaminase [Streptomyces scabiei 87.22]
 gi|260648672|emb|CBG71785.1| putative deaminase [Streptomyces scabiei 87.22]
          Length = 183

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 45/149 (30%), Gaps = 36/149 (24%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGI-VIGRGVTAYGGC----PHA 55
           PV       M  AL  +         +  V  +++  DG  V+  G            HA
Sbjct: 15  PVRDPWRAAMRLALAEA--GRAAEGGDVPVGAVVLSPDGTTVLATGHNEREATGDPTAHA 72

Query: 56  EVQAL---------------------EEAGE-EARGATAYVTLEPCSHYGRSPPCAQFII 93
           EV AL                        GE      T  VTLEPC        CA  ++
Sbjct: 73  EVLALRRAAAALRATGARGSSAEEGGRRTGEWRLTDCTLVVTLEPC------TMCAGALV 126

Query: 94  ECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           +  I RVV    D     +G     +  +
Sbjct: 127 QSRIDRVVYGARDEKAGATGSLWDVVRDR 155


>gi|196047133|ref|ZP_03114350.1| dihydrofolate reductase family protein [Bacillus cereus 03BB108]
 gi|229182983|ref|ZP_04310215.1| Enzyme [Bacillus cereus BGSC 6E1]
 gi|196022003|gb|EDX60693.1| dihydrofolate reductase family protein [Bacillus cereus 03BB108]
 gi|228600440|gb|EEK58028.1| Enzyme [Bacillus cereus BGSC 6E1]
          Length = 173

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 2/95 (2%)

Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
             K +   +     D+ +    L  +  + + + GG ++   F  + L+D  ++  +  +
Sbjct: 78  LEKGSNEHVEFVNEDVVEFTKRLKAQEGSKIWMVGGGSLLREFFKNNLIDEYVVTMTPHI 137

Query: 320 IGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           +G  G+P   ++   E +        FG  V L Y
Sbjct: 138 LGS-GVP-LFQDKNPEIHLTLTDTKRFGQFVNLYY 170


>gi|58263382|ref|XP_569101.1| dCMP deaminase [Cryptococcus neoformans var. neoformans JEC21]
 gi|57223751|gb|AAW41794.1| dCMP deaminase, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 273

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 56/157 (35%), Gaps = 47/157 (29%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPS---VACLIVKDGIVIGRGVT--------------- 47
           +D  FM+ A       +    +N     V  L+V+   ++  G                 
Sbjct: 126 WDTYFMTLA------SLASERSNCMKRRVGALLVRSKRILSTGYNGTPRGTRNCNQGGCS 179

Query: 48  -----AYGGCP-------HAEVQALEEAGEEARG--ATAYVTLEPCSHYGRSPPCAQFII 93
                A GG         HAE  AL EAG E  G  +  Y    PC        C+  I+
Sbjct: 180 RCNGSARGGEALNECLCLHAEENALLEAGRERIGDDSVIYCNTCPCLR------CSVKIV 233

Query: 94  ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           +CG+R VV    +    +     + L + G+++ ++ 
Sbjct: 234 QCGVREVVY---NQSYSMDEASARVLKEGGVLLRQLH 267


>gi|284989444|ref|YP_003407998.1| cytosine deaminase [Geodermatophilus obscurus DSM 43160]
 gi|284062689|gb|ADB73627.1| Cytosine deaminase [Geodermatophilus obscurus DSM 43160]
          Length = 165

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 49/149 (32%), Gaps = 20/149 (13%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAE 56
           + +   D   +  A+  +R  +G       +   +V    V+  G            H E
Sbjct: 13  LTLQERDRFLLGLAVEQAR--IGWEEGGVPIGAALVDGDRVLAVGRNRRVQMASAIRHGE 70

Query: 57  VQALEEAGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
              +E AG       R +  Y TL PC     +       +   I R+VV  +    R  
Sbjct: 71  TDCIERAGRLPASVYRRSVLYTTLSPCLMCAGTA------LLYDIPRIVVGEN----RSF 120

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
               + L  +G+ VD + + +    +   
Sbjct: 121 QVSEELLRSRGVQVDVLDDPDCLALMERM 149


>gi|159039637|ref|YP_001538890.1| deaminase-reductase domain-containing protein [Salinispora
           arenicola CNS-205]
 gi|157918472|gb|ABV99899.1| bifunctional deaminase-reductase domain protein [Salinispora
           arenicola CNS-205]
          Length = 195

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           D    +  L  +    + + GG  +A   ++   VD ++L  + +V+G  GIP  ++ G+
Sbjct: 110 DPTAFVRRLKAQPGRDIWLCGGGQLAGQLLDD--VDELVLKLNPVVVGS-GIP-LVDRGF 165

Query: 334 LEKNFMCVRRDYFGSD-VCLEYIG 356
               F       F S  V L Y  
Sbjct: 166 DPHRFALTSTRPFDSGVVVLRYTR 189


>gi|319790757|ref|YP_004152397.1| bifunctional deaminase-reductase domain protein [Variovorax
           paradoxus EPS]
 gi|315593220|gb|ADU34286.1| bifunctional deaminase-reductase domain protein [Variovorax
           paradoxus EPS]
          Length = 196

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 60/178 (33%), Gaps = 18/178 (10%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPIT-GFISK-NQVHLLRAQSDAILVGIGTVLADDPE 206
              + L++ +S D  +  A         G+  +      L+A  +A+  G+ T+      
Sbjct: 1   MRKLILQMQMSVDGYVSPANGNIDWQVWGWGDRWAWDDKLKAYFNAVFEGVDTI------ 54

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKI-IKTALLAPVIIVTENDDPVLALAFRKKNI 265
           L  R    + +      LD   + + +     + A    V+   +    VL         
Sbjct: 55  LLSRKIVEEGY------LDHWGRAAKNYPANPQFAFAQKVV---DAQKVVLTDKLEASRW 105

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
                    + + +  L       +LV GG   A S +N  LVD    + + + +G G
Sbjct: 106 ERTVIARGGMAEEVNALKREEGKDILVIGGVGFASSLVNEGLVDEFQFFVNPMAVGAG 163


>gi|284929670|ref|YP_003422192.1| deoxycytidylate deaminase [cyanobacterium UCYN-A]
 gi|284810114|gb|ADB95811.1| deoxycytidylate deaminase [cyanobacterium UCYN-A]
          Length = 184

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 40/135 (29%), Gaps = 39/135 (28%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG-CPH---------AEV 57
             FM  A + +      T     V  +IVKD  V+  G         H            
Sbjct: 13  EYFMMMA-KLA--ATRSTCLAFPVGAVIVKDKRVLSTGYNGPPANSSHCISQGVCYPGLE 69

Query: 58  QALEEAGEEAR--------------------GATAYVTLEPCSHYGRSPPCAQFIIECGI 97
             +  +   +R                     +T YVTLEPC        C + II  GI
Sbjct: 70  SCISSSNLPSRAVHAEANAIAQAAKYRISTNNSTIYVTLEPCI------SCLKLIISAGI 123

Query: 98  RRVVVCVDDPDVRVS 112
           + V    +   V  S
Sbjct: 124 KEVFYETEFNKVNKS 138


>gi|152964439|ref|YP_001360223.1| CMP/dCMP deaminase zinc-binding [Kineococcus radiotolerans
           SRS30216]
 gi|151358956|gb|ABS01959.1| CMP/dCMP deaminase zinc-binding [Kineococcus radiotolerans
           SRS30216]
          Length = 144

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 45/122 (36%), Gaps = 18/122 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY--GGCP--HAEVQALEEAGE 65
           M  AL  +R  +        V  ++V   G V+G G       G P  HAEV AL  A  
Sbjct: 1   MGLALDEARACLATGDV--PVGAVVVDAAGTVLGAGRNEREAAGDPTAHAEVLALRAAAR 58

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                   G T  VTLEPC        CA   +   + R+V+   DP    +G     + 
Sbjct: 59  ARGEWRLTGCTLVVTLEPC------VMCAGATVLARVDRLVLGAWDPRFGAAGSLRDVVR 112

Query: 121 QK 122
             
Sbjct: 113 DA 114


>gi|310658939|ref|YP_003936660.1| ywjb [Clostridium sticklandii DSM 519]
 gi|308825717|emb|CBH21755.1| YwjB [Clostridium sticklandii]
          Length = 170

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
           + V GG  +    +++ +VD+II+  + +++G+ G+P   ++  L K F       +G 
Sbjct: 105 IWVVGGNTLLAPLLDNDMVDNIIIQIAPVLLGD-GVPLFSQKESL-KRFYLKEVKKYGQ 161


>gi|47459365|ref|YP_016227.1| deoxycytidylate deaminase competance related protein [Mycoplasma
           mobile 163K]
 gi|47458695|gb|AAT28016.1| deoxycytidylate deaminase competance related protein [Mycoplasma
           mobile 163K]
          Length = 154

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 45/135 (33%), Gaps = 37/135 (27%)

Query: 1   MPVSSFD--ARFMSAALRFSR-WHVGLTSTNPSVACLIVKDG-IVIGRGVTAYGGCP--- 53
           M     D  + FM+     S+   +     N  V   IV D   V+  G           
Sbjct: 1   MENKVLDWHSYFMA----LSKVSALRSKDPNTKVGACIVDDNKRVVSLGYNGMPRGDDKN 56

Query: 54  -------------------HAEVQALEEAGEEARG-ATAYVTLEPCSHYGRSPPCAQFII 93
                              HAE+ A+  A ++       YV+L PCS+      CA+ I 
Sbjct: 57  FSWKRDNEKAADNKYAYVIHAEINAILNANKQIDSKCVLYVSLFPCSN------CAKIIA 110

Query: 94  ECGIRRVVVCVDDPD 108
           + GI ++    D  +
Sbjct: 111 QVGINQLYYEEDKYN 125


>gi|78046250|ref|YP_362425.1| putative cytosine deaminase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78034680|emb|CAJ22325.1| putative cytosine deaminase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 151

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 51/143 (35%), Gaps = 19/143 (13%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR 68
           A+  +R   GL      +   +   DG ++G G            H E  A  +AG + R
Sbjct: 14  AITEAR--QGLAEGGIPIGAALYHNDGRLLGCGHNRRVQENDPSVHGETDAFRKAGRQRR 71

Query: 69  --GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
                   TL PC +      C+  + +  I  VVV     +      G+ WL + G+ V
Sbjct: 72  YKDTIMVTTLAPCWY------CSGLVRQFNIGTVVVG----ESVTFQGGIAWLREHGVNV 121

Query: 127 DRMMESEGKIFLHAYLTRQVEKR 149
             +   E    L  Y++   +  
Sbjct: 122 IDLHSQECIDLLGGYISANPDVW 144


>gi|229095301|ref|ZP_04226293.1| Enzyme [Bacillus cereus Rock3-29]
 gi|229114250|ref|ZP_04243671.1| Enzyme [Bacillus cereus Rock1-3]
 gi|228669270|gb|EEL24691.1| Enzyme [Bacillus cereus Rock1-3]
 gi|228688160|gb|EEL42046.1| Enzyme [Bacillus cereus Rock3-29]
          Length = 173

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
             L  +  + + + GG ++   F  + L+D  ++  +  ++G  G+P   +    E N  
Sbjct: 98  KRLKEQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVP-LFQAKNPEINLT 155

Query: 340 CVRRDYFGSDVCLEY 354
                 FG  V L Y
Sbjct: 156 LTDTKRFGQFVNLYY 170


>gi|226226900|ref|YP_002761006.1| putative deaminase [Gemmatimonas aurantiaca T-27]
 gi|226090091|dbj|BAH38536.1| putative deaminase [Gemmatimonas aurantiaca T-27]
          Length = 144

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 47/129 (36%), Gaps = 22/129 (17%)

Query: 30  SVACLIVKD--GIVIGRGVTA----YGGCPHAEVQALEEAGEEARGA-----TAYVTLEP 78
            V  ++++   G +I R             HAEV AL EA   A  A     T  VTLEP
Sbjct: 18  PVGAVVMRTETGEIIVRAQNRMRRDGDATAHAEVLALREAARIAGDARLGEFTLVVTLEP 77

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESE 133
           C+       CA  I+   I  +     D    + G     +    +     +   ++ESE
Sbjct: 78  CAM------CAGAIVLARIGALAFGAWDEKAGMCGSVGDIVRHARLNHRPAVQGGVLESE 131

Query: 134 GKIFLHAYL 142
            +  L  + 
Sbjct: 132 NRALLQQFF 140


>gi|3599384|gb|AAC62690.1| dCMP deaminase [Cenarchaeum symbiosum]
          Length = 213

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 29/114 (25%), Gaps = 45/114 (39%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53
           S+D  FM  A   ++        N  V     +IV+D   +  G                
Sbjct: 45  SWDEYFMLQA-ELAKLRS-----NCMVRKVGAVIVRDHRQLATGYNGTPPGVKNCFEGGC 98

Query: 54  -----------------------HAEVQALEEA-----GEEARGATAYVTLEPC 79
                                  HAE  A+        G     AT Y T  PC
Sbjct: 99  ERCIERMEGKIRSGEGLDRCLCNHAEANAIMHCAILGIGAGGGNATMYTTFSPC 152


>gi|158312920|ref|YP_001505428.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EAN1pec]
 gi|158108325|gb|ABW10522.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EAN1pec]
          Length = 188

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 8  ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
             M  A R +   V      P    +IVKDG ++ RG            HAEV+++ +A
Sbjct: 4  EELMGEATRLATQSVENGWGGP-FGAVIVKDGEIVARGQNRVLLTGDPTAHAEVESIRKA 62


>gi|323494127|ref|ZP_08099243.1| deaminase-reductase domain-containing protein [Vibrio brasiliensis
           LMG 20546]
 gi|323311754|gb|EGA64902.1| deaminase-reductase domain-containing protein [Vibrio brasiliensis
           LMG 20546]
          Length = 177

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 69/204 (33%), Gaps = 41/204 (20%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL----LRAQSDAILVGIGTVLADDPEL 207
             + IA S D  I     G   +    + + V +    L  Q DA+++G  T+       
Sbjct: 3   NIVFIATSIDGYIADKDGGLDWLHSVPNPDNVDMGFGPLMEQVDALVMGRNTLEM----- 57

Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
                          +L           +           V  N    +   ++ K    
Sbjct: 58  ---------------VLSFDVDWPYSKPVF----------VLSNTMTEVPEGYQDK---- 88

Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           ++    +L ++++ L  +G   L ++GG     +F+   L+D + +    +++G GG+  
Sbjct: 89  VFLINGELTQVVSDLNQQGYHDLYIDGG-ITIQNFLEQELIDQLTITTIPVLLG-GGVK- 145

Query: 328 PLEEGYLEKNFMCVRRDYFGSDVC 351
              +    +N+  V    +   + 
Sbjct: 146 LFGDLESMQNYKLVESTVYLDTIV 169


>gi|116250356|ref|YP_766194.1| RibD family protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255004|emb|CAK06078.1| putative RibD family protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 185

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           LT L      ++L+ G A +A S + + L+D I +    +++G G 
Sbjct: 106 LTRLKQEDGKAILIFGSAELADSLLKAGLIDEIRVCLVPVILGGGN 151


>gi|312881768|ref|ZP_07741542.1| putative deoxycytidylate deaminase [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370519|gb|EFP97997.1| putative deoxycytidylate deaminase [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 153

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 28/89 (31%), Gaps = 23/89 (25%)

Query: 31  VACLIVKDGIVIGRGVTAYGG-----------------CPHAEVQALEEAGEEARGATAY 73
           V  +I +   ++  G   Y                     HAE  A+  A         +
Sbjct: 27  VGAVITQQNRIVSVGFNGYPHGISDSAETDDREMKYLKTLHAEENAILFAKRNLDDCEIW 86

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           VT  PC      P CA  II+ GI  V  
Sbjct: 87  VTHFPC------PNCAAKIIQTGICAVHC 109


>gi|188582573|ref|YP_001926018.1| CMP/dCMP deaminase zinc-binding [Methylobacterium populi BJ001]
 gi|179346071|gb|ACB81483.1| CMP/dCMP deaminase zinc-binding [Methylobacterium populi BJ001]
          Length = 153

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 45/158 (28%), Gaps = 26/158 (16%)

Query: 8   ARFMSAA--LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALE 61
             ++  A  L  +    G          +IV++G V+ R             HAE+ A+ 
Sbjct: 5   ESYLREATELALANVAEGGR----PYGAVIVREGEVVARAANRIHATNDPSDHAEMVAIR 60

Query: 62  EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
            A +     +      Y +  PC      P C   +   G+++                 
Sbjct: 61  AASQRLGRPKLDDCIVYASGRPC------PMCHAAMRLAGVKQ-----SYFAFTAEEAEA 109

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL 154
           + L   GI  +     E +     +     +   +   
Sbjct: 110 EGLLSAGIYAELCRPLEEQPMQVRHQPLADQPSPYRAW 147


>gi|331004720|ref|ZP_08328174.1| hypothetical protein HMPREF0491_03036 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330409099|gb|EGG88557.1| hypothetical protein HMPREF0491_03036 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 160

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 19/116 (16%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGR----GVTAYGGCPHA 55
           MP       ++   +  S+      + N     ++V + G ++       +T      HA
Sbjct: 1   MPYKKH-EYYLRRCIEISQNARN--NGNTPFGAILVDEYGKILLEQENIEITGKICTGHA 57

Query: 56  EVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           E    E A      E     T Y T EPC+       C   I    I RVV  + +
Sbjct: 58  ETTLAERASHLYSKEFLWRCTLYTTAEPCAM------CTGAIYWANIGRVVFAMTE 107


>gi|322434724|ref|YP_004216936.1| bifunctional deaminase-reductase domain protein [Acidobacterium sp.
           MP5ACTX9]
 gi|321162451|gb|ADW68156.1| bifunctional deaminase-reductase domain protein [Acidobacterium sp.
           MP5ACTX9]
          Length = 177

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 6/86 (6%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D++  +  L       L + GG  +A S   + L+D   +Y   +V+G G    P   
Sbjct: 96  ADDIETAIRKLKTEQTGELEI-GGPDLAQSLTQAGLIDEYQIYLRPVVLGSGK---PFFT 151

Query: 332 GYLEKNFMCVRRDYFGSDVC-LEYIG 356
                    +  D  G ++  L Y+ 
Sbjct: 152 A-PPPPLRLIASDPLGENIIRLTYVP 176


>gi|238859563|ref|NP_001154984.1| deoxycytidylate deaminase isoform 2 [Rattus norvegicus]
          Length = 173

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 28/105 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        +  V   IV  +  ++G G                  
Sbjct: 20  EWPEYFMAVAFLSAQRSK---DPSSQVGACIVNTENKIVGIGYNGMPNGCSDDLLPWRRT 76

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGR 84
                 T Y    HAE+ A+  +   + +G + YV L PC+   +
Sbjct: 77  AENKLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNECAK 121


>gi|260943466|ref|XP_002616031.1| hypothetical protein CLUG_03273 [Clavispora lusitaniae ATCC 42720]
 gi|238849680|gb|EEQ39144.1| hypothetical protein CLUG_03273 [Clavispora lusitaniae ATCC 42720]
          Length = 296

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 45/129 (34%), Gaps = 28/129 (21%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYG----GCPHAEVQA--- 59
           ++M+ A   +        T   VAC+ V +    ++  G         G  HAE  A   
Sbjct: 8   QYMAVATFVAYRAFANGET--PVACVFVHEPSQTILAFGCNDTNRSLNGTRHAEFMAIDK 65

Query: 60  -------LEEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                  L  + E+          YVT+EPC        CA  +   GI++V     +  
Sbjct: 66  ILQENHLLNSSPEKVAAFFSQVVLYVTVEPC------VMCASALRHVGIKKVYFGAANDR 119

Query: 109 VRVSGRGLQ 117
              +G  ++
Sbjct: 120 FGGNGTVIK 128


>gi|74216091|dbj|BAE23721.1| unnamed protein product [Mus musculus]
          Length = 150

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 28/105 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
            +   FM+ A   ++        +  V   IV  +  ++G G                  
Sbjct: 20  EWPEYFMAVAFLSAQRSK---DPSSQVGACIVNTENKIVGIGYNGMPNGCSDDLLPWRRT 76

Query: 47  ------TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGR 84
                 T Y    HAE+ A+  +   + +G + YV L PC+   +
Sbjct: 77  AENKLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNECAK 121


>gi|331694222|ref|YP_004330461.1| CMP/dCMP deaminase zinc-binding protein [Pseudonocardia
           dioxanivorans CB1190]
 gi|326948911|gb|AEA22608.1| CMP/dCMP deaminase zinc-binding protein [Pseudonocardia
           dioxanivorans CB1190]
          Length = 153

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 51/157 (32%), Gaps = 23/157 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYG--GCPHAEV 57
           M     D R +  A+  +R  +G       +  ++V   G  +     A    G P A  
Sbjct: 1   MIPGPDDERLVRRAIDVARGALGTGD--VPIGAVVVDASGAEVATACNAREALGDPTAHA 58

Query: 58  QALEEAGE-------EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           + L               G T  VTLEPC        CA  I    + RVV    +P   
Sbjct: 59  EILALRAAAAVLGEWRLTGCTLVVTLEPC------TMCAGAIWLARVPRVVFGAWEPRTG 112

Query: 111 VSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
            +G     L  + +     +V  ++  E    L  + 
Sbjct: 113 AAGSLWDVLRDRRLNHRPEVVGGVLADECAALLEDFF 149


>gi|319794452|ref|YP_004156092.1| bifunctional deaminase-reductase domain protein [Variovorax
           paradoxus EPS]
 gi|315596915|gb|ADU37981.1| bifunctional deaminase-reductase domain protein [Variovorax
           paradoxus EPS]
          Length = 214

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 20/30 (66%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GGA VA  ++ + LVD + L+ +  ++G+G
Sbjct: 153 GGAHVARQYLKAGLVDEVQLHLAPTLLGDG 182


>gi|264680902|ref|YP_003280812.1| bifunctional deaminase-reductase-like protein [Comamonas
           testosteroni CNB-2]
 gi|299530893|ref|ZP_07044307.1| bifunctional deaminase-reductase-like protein [Comamonas
           testosteroni S44]
 gi|262211418|gb|ACY35516.1| bifunctional deaminase-reductase-like protein [Comamonas
           testosteroni CNB-2]
 gi|298721114|gb|EFI62057.1| bifunctional deaminase-reductase-like protein [Comamonas
           testosteroni S44]
          Length = 189

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 8/107 (7%)

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
             P  + +    P++       ++  +  D R +   +      G  ++ + GG  +A  
Sbjct: 74  AQPAWVFSSRQLPLI----EGADVRFVSGDVRPVLASMR--AAAGDKNIWIVGGGDLAGQ 127

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
           F ++ L+D +I+      +G G     L    L            G 
Sbjct: 128 FHDAGLLDEVIVQIGSATLGRG--KPLLPRRLLSPVLQLQSVQQMGP 172


>gi|195160343|ref|XP_002021035.1| GL25124 [Drosophila persimilis]
 gi|194118148|gb|EDW40191.1| GL25124 [Drosophila persimilis]
          Length = 159

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 44/135 (32%), Gaps = 36/135 (26%)

Query: 31  VACLIVKDG-IVIGRGVTA----------------YGGCP-----------HAEVQA-LE 61
           V   IV     ++  G                       P           HAE  A L 
Sbjct: 18  VGACIVDQQKRIVAIGYNGLPRNCSDDEFPWSKLSKNSSPDSLEEKKLYVVHAEANAILN 77

Query: 62  EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP-DVRVSGRGLQWLS 120
             G    G   Y TL PC+       CA+ II+ GI++V    D     ++     + L 
Sbjct: 78  SNGGSLVGTCLYTTLFPCNE------CAKLIIQSGIQKVFYMSDKYAHKQIYRASRRMLD 131

Query: 121 QKGIIVDRMMESEGK 135
             G++  R + ++ +
Sbjct: 132 CVGVVCTRHVPAQKQ 146


>gi|219670011|ref|YP_002460446.1| bifunctional deaminase-reductase domain protein [Desulfitobacterium
           hafniense DCB-2]
 gi|219540271|gb|ACL22010.1| bifunctional deaminase-reductase domain protein [Desulfitobacterium
           hafniense DCB-2]
          Length = 181

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 65/207 (31%), Gaps = 42/207 (20%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
              +  ++A S D  I     G   IT   S      L AQ D +L+G  T         
Sbjct: 1   MRRVRYQVACSMDGYIAAPNDGFDWITPEPSF-DFEALYAQFDTLLMGRRTYEI------ 53

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
            R  G        I+     +  +D   ++        IV+E                  
Sbjct: 54  VRATGESFRGKQVIVASRSLR-PVDHPDVE--------IVSEG----------------- 87

Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
                 L+  +  L G+    + + GG  +    +   LVD+       I++G G     
Sbjct: 88  ------LEARVRELRGQPGRDIWLYGGGNLFSQLLAWNLVDTFEPAIIPILLGGG--VQL 139

Query: 329 LEEGYLEKNFMCVRRDYFGSD-VCLEY 354
           L    + +    VR   + S  + LEY
Sbjct: 140 LPPHGIRRCLELVRHRAYPSGMLLLEY 166


>gi|261330463|emb|CBH13447.1| deaminase, putative [Trypanosoma brucei gambiense DAL972]
          Length = 225

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 56/195 (28%), Gaps = 62/195 (31%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGI-----------------VIGRGVTAYG-- 50
           FM AAL+ +     L      V C++VK                    ++ RG  A    
Sbjct: 27  FMQAALKEA--TCALEEGEVPVGCVLVKADSSTAAQAQAGDDLALQKLIVARGRNATNRK 84

Query: 51  --GCPHAEVQALEEAGEEARGAT---------------------AYVTLEPCSHYGRSPP 87
                HAE  A+EE   +A   T                      YV +EPC        
Sbjct: 85  GHALAHAEFVAVEELLRQATAGTSENIGGGGNCGAVSQDLADYVLYVVVEPCIM------ 138

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL--------SQKGII----VDRMMESEGK 135
           CA  ++   +R+V     +P    +G  L               I+           E  
Sbjct: 139 CAAMLLYNRVRKVYFGCTNPRFGGNGTVLSVHNSYKGCSGEDAAIVGYESCGGYRAEEAV 198

Query: 136 IFLHAYLTRQVEKRS 150
           + L  +  R+     
Sbjct: 199 VLLQQFYRRENTNAP 213


>gi|189220330|ref|YP_001940970.1| Cytosine/adenosine deaminase [Methylacidiphilum infernorum V4]
 gi|189187188|gb|ACD84373.1| Cytosine/adenosine deaminase [Methylacidiphilum infernorum V4]
          Length = 159

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 16/124 (12%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
           S D RF+      +R +V     +P    ++V +  ++G+G            HAE++A+
Sbjct: 4   SMDLRFLERTACLARDNVLSNRGDP-FGPVVVLEDQIVGQGANRVTVLCDPTAHAEIEAM 62

Query: 61  EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A       + RG   Y+ + P       P C        I+R+V    +     +G  
Sbjct: 63  RQAAIKLGRFDLRGCLLYMNINPY------PMCLTAAYWARIKRIVCGGPNTLTEKAGFK 116

Query: 116 LQWL 119
             +L
Sbjct: 117 GTYL 120


>gi|324324688|gb|ADY19948.1| dihydrofolate reductase family protein [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 173

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             +     D+ +    L  +  + + + GG ++   F  + L+D  ++  +  ++G  G+
Sbjct: 84  EHVEFVNEDVVEFTKRLKAQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GV 142

Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           P   +    E +        FG  V L Y
Sbjct: 143 P-LFQNKNPEIHLTLTDTKRFGQFVNLYY 170


>gi|332885013|gb|EGK05266.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Dysgonomonas mossii DSM 22836]
          Length = 179

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           I+    ++ + L+ +  +    + + GG  +    +++ L+D +I+    +++G G    
Sbjct: 88  IHFVSENIIEALSEIKKQEGKDIWIVGGGEIISMLLDNDLIDEMIITIIPMMLGSG---I 144

Query: 328 PLEEGYL-EKNFMCVRRDYFGSDVC-LEYIGK 357
           PL      E  +       + ++V  +EY   
Sbjct: 145 PLFPNIAKELTWKLDNTHSYSNNVLQVEYHRD 176


>gi|254519007|ref|ZP_05131063.1| deaminase-reductase domain-containing protein [Clostridium sp.
           7_2_43FAA]
 gi|226912756|gb|EEH97957.1| deaminase-reductase domain-containing protein [Clostridium sp.
           7_2_43FAA]
          Length = 189

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 5/85 (5%)

Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           I+ +   L+++   L  +    + + GGA++  +FIN  L+D   L    +++GEG    
Sbjct: 100 IFINENILEEV-NKLKNKPGKDIWLYGGASLITTFINLGLIDEFRLSIHPVILGEGK--- 155

Query: 328 PLEEGYLEK-NFMCVRRDYFGSDVC 351
           PL     ++ N   V    F S V 
Sbjct: 156 PLFTDVKQRLNLKMVNARTFSSGVV 180


>gi|319641309|ref|ZP_07996006.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Bacteroides sp. 3_1_40A]
 gi|317387055|gb|EFV67937.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Bacteroides sp. 3_1_40A]
          Length = 192

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 52/169 (30%), Gaps = 39/169 (23%)

Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHL----LRAQSDAILVGIGTVLADDPELTCRLNGL 214
           S D  I         +T +            L    D I++G  T  A            
Sbjct: 26  SLDGYIARPDGNLDWLTKYPMPTGTEYGYKDLMDSIDTIIMGGKTYRA------------ 73

Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274
                   +LD  F+     K       A  I+   N +         KN+  I     +
Sbjct: 74  --------VLDMDFEWPYSDK-------ACYIVSHRNTN-----LTPTKNVKFI---TEN 110

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           + + +  L  +    + + GG  V    +N  LVD + +    +++G G
Sbjct: 111 VVETVKALKQQDGKDIWLVGGGQVITLLLNHDLVDEMQICYIPVILGNG 159


>gi|94971013|ref|YP_593061.1| bifunctional deaminase-reductase-like [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553063|gb|ABF42987.1| bifunctional deaminase-reductase-like protein [Candidatus
           Koribacter versatilis Ellin345]
          Length = 177

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCL 352
           GG  +A S   + L+D   LY   +V+G G   +P   G        V  D    D + L
Sbjct: 117 GGPILAQSLTEAGLIDEYRLYLRPVVLGSG---TPFFAG-PRPPLHLVASDLIVEDLIRL 172

Query: 353 EYIG 356
            Y+ 
Sbjct: 173 TYVP 176


>gi|325684667|gb|EGD26821.1| deoxycytidylate deaminase [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 160

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 51/144 (35%), Gaps = 34/144 (23%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------TAYGGCP 53
             FM  AL  ++     T     V  ++VKD  ++  G                      
Sbjct: 10  QYFMMQALVIAQRS---TCDRALVGSVLVKDKRILSTGYNGSVSGQDHCDDVGHQLVDGH 66

Query: 54  -----HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                H+E+ +L    + G        YVT  PC +      C + +++ G+ ++    D
Sbjct: 67  CVRTIHSEMNSLISCAKNGVSTDNTEIYVTHFPCYN------CTKHLLQAGVTKINYYYD 120

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRM 129
             D  ++   +Q L   G+  +++
Sbjct: 121 YHDSPLA---IQLLRDSGVPYEQI 141


>gi|325925419|ref|ZP_08186818.1| cytosine/adenosine deaminase [Xanthomonas perforans 91-118]
 gi|325928766|ref|ZP_08189935.1| cytosine/adenosine deaminase [Xanthomonas perforans 91-118]
 gi|325540847|gb|EGD12420.1| cytosine/adenosine deaminase [Xanthomonas perforans 91-118]
 gi|325544179|gb|EGD15563.1| cytosine/adenosine deaminase [Xanthomonas perforans 91-118]
          Length = 151

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 51/143 (35%), Gaps = 19/143 (13%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR 68
           A+  +R   GL      +   +   DG ++G G            H E  A  +AG + R
Sbjct: 14  AITEAR--QGLAEGGIPIGAALYHNDGRLLGCGHNRRVQENDPSVHGETDAFRKAGRQRR 71

Query: 69  --GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
                   TL PC +      C+  + +  I  VVV     +      G+ WL + G+ V
Sbjct: 72  YKDTIMVTTLAPCWY------CSGLVRQFNIGTVVVG----ESVTFQGGIAWLREHGVNV 121

Query: 127 DRMMESEGKIFLHAYLTRQVEKR 149
             +   E    L  Y++   +  
Sbjct: 122 IDLQSQECIDLLGGYISANPDVW 144


>gi|308177125|ref|YP_003916531.1| RibD domain-containing protein [Arthrobacter arilaitensis Re117]
 gi|307744588|emb|CBT75560.1| RibD domain-containing protein [Arthrobacter arilaitensis Re117]
          Length = 197

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                +PV ++T +  P L L        I       L +       R V    + GGA 
Sbjct: 83  NPPYHSPVFVLTHHHKPTLCLEGGTSFQFITQGIEEALCQAQDAAGERPVA---IAGGAQ 139

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGI 325
               F+ + L+D + L+ + I +G+G  
Sbjct: 140 TIVQFLRAGLIDELRLHIAPIRLGQGEA 167


>gi|271964751|ref|YP_003338947.1| deaminase-reductase domain-containing protein [Streptosporangium
           roseum DSM 43021]
 gi|270507926|gb|ACZ86204.1| deaminase-reductase domain-containing protein [Streptosporangium
           roseum DSM 43021]
          Length = 180

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 59/179 (32%), Gaps = 35/179 (19%)

Query: 157 AVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE 216
            +S D  I   G     I  +++ + V  + A + A+L+G GT       +  R+     
Sbjct: 16  VMSLDGFIAGPGHAMDWIFEYMTADTVPEVMAATGAMLIGRGTYE-----VGKRMADQDT 70

Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276
                   D   +  L          A   +    ++ V          N          
Sbjct: 71  SY------DGGAQFVLTHNPPAEPDPAVTFLTCGLEEAVATARSAAGGKN---------- 114

Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
             L IL            GA VA   +   LVD I++Y   +++G+G   SP   G ++
Sbjct: 115 --LEIL------------GADVAAQCLQRGLVDEILVYVLPLLLGDGVRFSPPGLGRID 159


>gi|218515307|ref|ZP_03512147.1| cytosine deaminase protein [Rhizobium etli 8C-3]
          Length = 170

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 47/159 (29%), Gaps = 44/159 (27%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG---------------CP 53
           RFM  AL  +R   G     P            IG  V                      
Sbjct: 8   RFMEMALEEAR-AAGERGEVP------------IGAVVVVDDIAVSRSGNRTRELNDVTA 54

Query: 54  HAEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+ A+  A      E   GA  YVTLEPC        CA  I    I R+    +DP 
Sbjct: 55  HAEIAAIRLACEALGQERLAGADLYVTLEPC------TMCAAAISFARIHRLYYGAEDPK 108

Query: 109 VRVSGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
                 G+++           +     E +    L  + 
Sbjct: 109 GGAVDNGVRFYTQPTCHHAPEVYSGFNEVQSAEILRTFF 147


>gi|197119604|ref|YP_002140031.1| RibD_C domain-containing protein [Geobacter bemidjiensis Bem]
 gi|197088964|gb|ACH40235.1| RibD_C domain protein [Geobacter bemidjiensis Bem]
          Length = 187

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           PV + T         A    +I  +  D   +   +  L  R    + + GG  +A  F 
Sbjct: 76  PVWVFTSRA----LSAIEGADIRFVKGDVCQVHNDMR-LAARAKN-IWIVGGGDLAGQFY 129

Query: 304 NSRLVDSIILYRSQIVIGEG 323
           ++ L+D +I+    + +G+G
Sbjct: 130 DAGLLDELIIQIGSVTLGKG 149


>gi|254787858|ref|YP_003075287.1| cytosine deaminase [Teredinibacter turnerae T7901]
 gi|237685613|gb|ACR12877.1| cytosine deaminase [Teredinibacter turnerae T7901]
          Length = 153

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 13/119 (10%)

Query: 30  SVACLIVKDGIVIGRGVTAY--GGC--PHAEVQALEEAGE--EARGATAYVTLEPCSHYG 83
            +   I++ G V+  G       G    H E   +E+ G   +    T + +L PC    
Sbjct: 27  PIGACIMQAGQVVAVGHNHRIQCGSNIRHGETDCIEKCGHTVDFSQVTLFSSLTPCLM-- 84

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
               C   II   I RVV+ +D+ ++      L  L ++ + V  +           + 
Sbjct: 85  ----CTGAIILYSIPRVVI-LDNINIHDYETNLDMLRERNVEVKILNHEPSIELNRQFQ 138


>gi|110003913|emb|CAK98253.1| putative cytidine and deoxycytidylate deaminase protein
           [Spiroplasma citri]
          Length = 159

 Score = 46.0 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 14/80 (17%)

Query: 29  PSVACLIVKDGIVIGRGV---TAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
           P  A ++ ++G +I  G    T      HAE+ AL +A  + R       + +VT+EPC 
Sbjct: 37  PISALVVDRNGKIIAIGYNKTTKNSVTTHAEIFALNQACRKKRTNKISDCSIWVTVEPCM 96

Query: 81  HYGRSPPCAQFIIECGIRRV 100
                  C   II  GI+ +
Sbjct: 97  M------CLGAIINSGIKVI 110


>gi|258651398|ref|YP_003200554.1| CMP/dCMP deaminase zinc-binding [Nakamurella multipartita DSM
           44233]
 gi|258554623|gb|ACV77565.1| CMP/dCMP deaminase zinc-binding [Nakamurella multipartita DSM
           44233]
          Length = 164

 Score = 46.0 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 17/111 (15%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG---CPHAEVQ 58
           +   D R +   +  +   +           ++V  DG V+        G     H E +
Sbjct: 1   MDETDLRHLRRCVELAEQALDSGDE--PFGSVLVTGDGTVLAEDHNRVAGGDRTRHPEFE 58

Query: 59  -----ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                A   +  E R AT Y + E C     +          G+ R+V   
Sbjct: 59  LARWAAANLSPHERRAATVYTSGEHCPMCAAAHAWV------GLGRIVYAT 103


>gi|229120299|ref|ZP_04249549.1| Enzyme [Bacillus cereus 95/8201]
 gi|228663109|gb|EEL18699.1| Enzyme [Bacillus cereus 95/8201]
          Length = 179

 Score = 46.0 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
             L G+  + + + GG ++   F  + L+D  ++  +  ++G  G+P   ++   E +  
Sbjct: 104 EKLKGQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVP-LFQDKNPEIHLT 161

Query: 340 CVRRDYFGSDVCLEY 354
                 FG  V L Y
Sbjct: 162 LTDTKRFGQFVNLYY 176


>gi|196035640|ref|ZP_03103043.1| dihydrofolate reductase family protein [Bacillus cereus W]
 gi|195991607|gb|EDX55572.1| dihydrofolate reductase family protein [Bacillus cereus W]
          Length = 173

 Score = 46.0 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
             L G+  + + + GG ++   F  + L+D  ++  +  ++G  G+P   ++   E +  
Sbjct: 98  EKLKGQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVP-LFQDKNPEIHLT 155

Query: 340 CVRRDYFGSDVCLEY 354
                 FG  V L Y
Sbjct: 156 LTDTKRFGQFVNLYY 170


>gi|218901845|ref|YP_002449679.1| dihydrofolate reductase family protein [Bacillus cereus AH820]
 gi|218536058|gb|ACK88456.1| dihydrofolate reductase family protein [Bacillus cereus AH820]
          Length = 173

 Score = 46.0 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
             L G+  + + + GG ++   F  + L+D  ++  +  ++G  G+P   ++   E +  
Sbjct: 98  EKLKGQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVP-LFQDKNPEIHLT 155

Query: 340 CVRRDYFGSDVCLEY 354
                 FG  V L Y
Sbjct: 156 LTDTKRFGQFVNLYY 170


>gi|118473247|ref|YP_884723.1| dihydrofolate reductase [Mycobacterium smegmatis str. MC2 155]
 gi|118174534|gb|ABK75430.1| dihydrofolate reductase [Mycobacterium smegmatis str. MC2 155]
          Length = 175

 Score = 46.0 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 9/110 (8%)

Query: 252 DDPVLALAFRKK---NINIIYCDCRDLKKLLTIL-VGRGVTSLLVEGGAAVAHSFINSRL 307
           D P   L  R +     + +     D+ +L   L    G   + V GG  VA  F+ + L
Sbjct: 67  DQPAWVLTHRPEIAAESHPMQVFSGDVAELHPELVAAAGGKDVWVVGGGDVAAQFVAADL 126

Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           +D II+  +   +G G    P+        ++       G  VC  +   
Sbjct: 127 IDEIIVSYAPCTLGVGSRVLPM-----RSEWVLDDCARNGDFVCARWKRP 171


>gi|328947621|ref|YP_004364958.1| bifunctional deaminase-reductase domain protein [Treponema
           succinifaciens DSM 2489]
 gi|328947681|ref|YP_004365018.1| bifunctional deaminase-reductase domain protein [Treponema
           succinifaciens DSM 2489]
 gi|328447945|gb|AEB13661.1| bifunctional deaminase-reductase domain protein [Treponema
           succinifaciens DSM 2489]
 gi|328448005|gb|AEB13721.1| bifunctional deaminase-reductase domain protein [Treponema
           succinifaciens DSM 2489]
          Length = 229

 Score = 45.7 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 48/114 (42%), Gaps = 3/114 (2%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
           ++LD         K         V++ +  + P  A +  ++N++I+Y +   LK  L  
Sbjct: 85  VLLDNSHLDERGIKYFCAKSKEFVLMTSNKNHP--AYSVNEENLHILYQEKFSLKNGLYQ 142

Query: 282 LV-GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
           L        L V+ G  V   F+  +L+D + +  + ++IG     + ++   +
Sbjct: 143 LKNDFSCERLTVQSGGTVNSIFLREKLIDFVDIVLAPVLIGGKDTSTLIDGKSI 196


>gi|289664006|ref|ZP_06485587.1| cytosine deaminase [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289667443|ref|ZP_06488518.1| cytosine deaminase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 151

 Score = 45.7 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 51/143 (35%), Gaps = 19/143 (13%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR 68
           A+  +R   GL      +   +   DG ++G G            H E  A  +AG + R
Sbjct: 14  AITEAR--QGLAEGGIPIGAALYHNDGRLLGCGHNRRVQENDPSVHGETDAFRKAGRQRR 71

Query: 69  --GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
                   TL PC +      C+  + +  I  VVV     +      G+ WL + G+ V
Sbjct: 72  YKDTIMVTTLAPCWY------CSGLVRQFNIGTVVVG----ESVTFQGGIAWLREHGVNV 121

Query: 127 DRMMESEGKIFLHAYLTRQVEKR 149
             +   E    L  Y++   +  
Sbjct: 122 IDLQSQECIDLLGGYISANSDVW 144


>gi|314924011|gb|EFS87842.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Propionibacterium acnes HL001PA1]
          Length = 152

 Score = 45.7 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 44/137 (32%), Gaps = 45/137 (32%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP------- 53
            V  +D  F+  A   S            V  L+V +  +I  G      G P       
Sbjct: 10  TVPDWDQYFLGIAEAVSARAKCTRR---RVGALLVHEHRIIATGYNGAAPGRPDCLEGAC 66

Query: 54  ----------------------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRS 85
                                       HAE+ AL  A  +  G+TAYVT +PC  YG  
Sbjct: 67  PRGRLDYGEVPAFSDYDVPGSPGFCIAIHAEMNALLFATRDTAGSTAYVTDKPC--YG-- 122

Query: 86  PPCAQFIIECGIRRVVV 102
             C + +   G+ R V 
Sbjct: 123 --CRKALAAAGVVRAVW 137


>gi|110669248|ref|YP_659059.1| cytosine/adenosine deaminases [Haloquadratum walsbyi DSM 16790]
 gi|109626995|emb|CAJ53471.1| cytosine/adenosine deaminases [Haloquadratum walsbyi DSM 16790]
          Length = 154

 Score = 45.7 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 45/137 (32%), Gaps = 21/137 (15%)

Query: 1   MPVSSFD----ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGR----GVTAYGGC 52
           M  S FD       M  AL+ +R              ++V+D  V+ R     +T     
Sbjct: 1   MIDSKFDTFDHEMHMQEALKLARESAARGDE--PFGSVLVRDDTVVMRESNHEITESDIR 58

Query: 53  PHAEVQ-ALE--EAGEEARGA--TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
            H E+  A    +A +    A    Y T EPC      P CA  ++  G    V  V   
Sbjct: 59  RHPELHLAYRACQAYDSDERAEMVMYTTTEPC------PMCAGGMVTAGFDSTVYSVGSD 112

Query: 108 DVRVSGRGLQWLSQKGI 124
           ++         +    I
Sbjct: 113 EIAEFTGNEPSVRSANI 129


>gi|291571887|dbj|BAI94159.1| putative cytidine/deoxycytidylate deaminase [Arthrospira platensis
           NIES-39]
          Length = 195

 Score = 45.7 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 50/151 (33%), Gaps = 40/151 (26%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCPHAEVQ----- 58
           S+D  F+  A + +      T     V  +IVKD  ++  G      G  H   Q     
Sbjct: 27  SWDEYFLMFA-KLA--ATRSTCLAFPVGAVIVKDRQILATGYNGSPSGSVHCTTQGFCYP 83

Query: 59  --------------ALE----------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                         A+           + G    GA+ YVTLEPC +      C + II 
Sbjct: 84  GLSSCDASKTLPSRAVHAEANAIAQAAKHGICCAGASIYVTLEPCIY------CLKLIIS 137

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
            GI+ V       +            Q+G++
Sbjct: 138 TGIKEVYY-EKVFNSGEKAMLRDMFVQEGLV 167


>gi|154500854|ref|ZP_02038892.1| hypothetical protein BACCAP_04539 [Bacteroides capillosus ATCC
           29799]
 gi|150270354|gb|EDM97680.1| hypothetical protein BACCAP_04539 [Bacteroides capillosus ATCC
           29799]
          Length = 180

 Score = 45.7 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 4/100 (4%)

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
             +++N   I+    +L  L   L G    ++ + GGA+VA   +    +D + L     
Sbjct: 80  HRQEENQRDIFFWNGELTALADKLKGEHEGNVWICGGASVAGQLLKEGRIDKLWLSIIPT 139

Query: 319 VIGEGGIPSPLEEGYLEKNFMCVRRDYFGS--DVCLEYIG 356
           V+G+G    P  E   E     VR +++    D+  E   
Sbjct: 140 VLGKGVRLFP--ELSQELPLKLVRTEHWNGIVDLVYERRR 177


>gi|323357173|ref|YP_004223569.1| cytosine/adenosine deaminase [Microbacterium testaceum StLB037]
 gi|323273544|dbj|BAJ73689.1| cytosine/adenosine deaminase [Microbacterium testaceum StLB037]
          Length = 159

 Score = 45.7 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 38/111 (34%), Gaps = 17/111 (15%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVI-GRGV--TAYGGCPHAEV 57
            + + D   +  A+  S+        N     L+V  DG V+       T      HAE 
Sbjct: 4   TIDATDLAHLHRAIALSQLAR--EHGNHPFGALLVTADGRVVEAENTVLTERDVTGHAET 61

Query: 58  QALEEAGEEARGA-----TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
             +    ++   A     T Y + EPC+       C   I   GI RVV  
Sbjct: 62  NLVRRVWKDLDAAELPASTLYTSCEPCAM------CCGAIFWAGIGRVVYA 106


>gi|297196690|ref|ZP_06914088.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297153350|gb|EFH32319.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 215

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
           GG A   S +++ LVD + L+ + +V+G G   +PL  G
Sbjct: 155 GGGATVASALDAGLVDELTLHLAPVVLGAG---TPLFTG 190


>gi|313103531|pdb|2XW7|A Chain A, Structure Of Mycobacterium Smegmatis Putative Reductase
           Ms0308
 gi|313103532|pdb|2XW7|B Chain B, Structure Of Mycobacterium Smegmatis Putative Reductase
           Ms0308
          Length = 178

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 9/110 (8%)

Query: 252 DDPVLALAFRKK---NINIIYCDCRDLKKLLTIL-VGRGVTSLLVEGGAAVAHSFINSRL 307
           D P   L  R +     + +     D+ +L   L    G   + V GG  VA  F+ + L
Sbjct: 70  DQPAWVLTHRPEIAAESHPMQVFSGDVAELHPELVAAAGGKDVWVVGGGDVAAQFVAADL 129

Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           +D II+  +   +G G    P+        ++       G  VC  +   
Sbjct: 130 IDEIIVSYAPCTLGVGSRVLPM-----RSEWVLDDCARNGDFVCARWKRP 174


>gi|325963162|ref|YP_004241068.1| dihydrofolate reductase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469249|gb|ADX72934.1| dihydrofolate reductase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 188

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 6/101 (5%)

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            P  + T ++    A      ++  +  D  +           G  +  V GG  +A  F
Sbjct: 72  TPAYVFTRHEYAAPA----GADVTFVRGDVTEFVADFERDA--GGRNTWVVGGGNLAAQF 125

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
            ++ L+D IIL    +V+GEG    PL+           R 
Sbjct: 126 ADAGLLDEIILSVIPVVLGEGKRLLPLKGPTPPLELTGSRT 166


>gi|83311796|ref|YP_422060.1| deoxycytidylate deaminase [Magnetospirillum magneticum AMB-1]
 gi|82946637|dbj|BAE51501.1| Deoxycytidylate deaminase [Magnetospirillum magneticum AMB-1]
          Length = 140

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 45/126 (35%), Gaps = 35/126 (27%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPS--VACLIV-KDGIVIGRGVTAYGGCP---- 53
           M ++ +D  FM  A      H    S +PS  V  + V  DG +   G            
Sbjct: 1   MTMAWYD-YFMGFA-----KHAASKSKDPSTQVGAVAVGPDGEIRATGYNGLPRGVEDRP 54

Query: 54  -------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                        HAE   +  A   G   +G T YVT  PCS       CA+ +I+ G+
Sbjct: 55  ERMERPAKYLWTSHAEENLVAHAARVGVSLKGCTVYVTHYPCSR------CARSLIQAGV 108

Query: 98  RRVVVC 103
             + V 
Sbjct: 109 AEIHVG 114


>gi|325125125|gb|ADY84455.1| dCMP deaminase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 160

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 50/144 (34%), Gaps = 34/144 (23%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------TAYGGCP 53
             FM  AL  ++     T     V  ++VKD  ++  G                      
Sbjct: 10  QYFMMQALVIAQRS---TCDRALVGSVLVKDKRILSTGYNGSVSGQDHCDDVGHQLVDGH 66

Query: 54  -----HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                H+E+ +L    + G        YVT  PC +      C + +++ G+ ++    D
Sbjct: 67  CVRTIHSEMNSLISCAKNGVSTDDTEIYVTHFPCYN------CTKHLLQAGVIKINYYYD 120

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRM 129
             D   +   +Q L   G+  +++
Sbjct: 121 YHDSPFA---IQLLRDSGVPYEQI 141


>gi|239832926|ref|ZP_04681255.1| deaminase-reductase domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239825193|gb|EEQ96761.1| deaminase-reductase domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 188

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 22/51 (43%)

Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            D+  L+  L       + + GG  +  +F+    +D I +Y    +IG G
Sbjct: 103 HDVDALIAELRALDDGDVWMLGGGQLQMAFLERGALDEIEIYVIPELIGGG 153


>gi|90409389|ref|ZP_01217468.1| dihydrofolate reductase-like protein [Psychromonas sp. CNPT3]
 gi|90309505|gb|EAS37711.1| dihydrofolate reductase-like protein [Psychromonas sp. CNPT3]
          Length = 186

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           ++K L+     +G  S  ++GG     SF+N  L++ IIL +  +++GEG   +PL    
Sbjct: 103 EIKLLIRTFEEKGYKSAYIDGGFT-ITSFLNHGLINEIILTKIPVLLGEG---TPLFGNV 158

Query: 334 LEK-NFMCVRRDYFGSD 349
            +K          F +D
Sbjct: 159 NKKLKLEKTEVKSFKND 175


>gi|311694330|gb|ADP97203.1| CMP/dCMP deaminase, zinc-binding protein [marine bacterium HP15]
          Length = 159

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 24/118 (20%)

Query: 14  ALRFSR---WHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----CPHAEVQALEEA-- 63
           A+  +       GL       + +IV ++G V+G+GV           HAE+QA+ +A  
Sbjct: 17  AIDLAISNVKAGGL-----PFSAVIVNQNGDVVGKGVNQVAEHLDCTAHAEIQAIRDASR 71

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                  +G T   + EPC+       C   I   GI  V + +D  +   +G   +W
Sbjct: 72  NENSVSLKGTTLIASGEPCA------LCYMAIRMAGIGHVRILLDRYEAAENGFDYRW 123


>gi|255035399|ref|YP_003086020.1| bifunctional deaminase-reductase domain-containing protein
           [Dyadobacter fermentans DSM 18053]
 gi|254948155|gb|ACT92855.1| bifunctional deaminase-reductase domain protein [Dyadobacter
           fermentans DSM 18053]
          Length = 206

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFI 303
           V +VT      +   +R+      Y     L+  L       G   + ++GGA +   F+
Sbjct: 96  VFVVTR----EVREPWRQNGSTTFYFVNDGLESALAKAKQSAGDRDVRIQGGADIIQQFL 151

Query: 304 NSRLVDSIILYRSQIVIGEG 323
           N+ L+D   +++S +++G G
Sbjct: 152 NAGLIDEFTIHQSPVMLGSG 171


>gi|225555098|gb|EEH03391.1| tRNA specific adenosine deaminase [Ajellomyces capsulatus G186AR]
          Length = 234

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 40/111 (36%), Gaps = 16/111 (14%)

Query: 51  GCPHAEVQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           G  HAE  A+EE          R    YVT+EPC        CA  + +  IR V     
Sbjct: 100 GTRHAEFLAIEEVLRNYPRSIFRETDLYVTVEPCIM------CASALRQYQIRHVYFGCA 153

Query: 106 DPDVRVSGRGLQWLSQKGII-----VDRMMESEGKIFLHAYLTRQVEKRSH 151
           +     +G  L   S  GI         +   E  + L  +  ++ E+  +
Sbjct: 154 NERFGGTGGVLNLHSDPGIDPPYGLTGGLFRREAIMLLRRFYIQENERAPN 204


>gi|149911122|ref|ZP_01899748.1| hypothetical protein PE36_24023 [Moritella sp. PE36]
 gi|149805799|gb|EDM65789.1| hypothetical protein PE36_24023 [Moritella sp. PE36]
          Length = 181

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSP 328
           D    +  L      ++ + GGA +A S +   LVD +IL    I++G G      P P
Sbjct: 93  DPAATIKQLKASSKGNIWLLGGANLADSLLRLDLVDELILSTIPILLGNGIRLFNAPLP 151


>gi|172057479|ref|YP_001813939.1| deaminase-reductase domain-containing protein [Exiguobacterium
           sibiricum 255-15]
 gi|171990000|gb|ACB60922.1| bifunctional deaminase-reductase domain protein [Exiguobacterium
           sibiricum 255-15]
          Length = 173

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           + + GG  +    +  +L+D + L  + +V+G G   S   EG LE  F        G  
Sbjct: 107 IWLIGGGELIQEALRLQLIDQLELAIAPVVLGSG--ISLFPEGTLETRFRLTGCRPSGQF 164

Query: 350 VCLEY 354
           +   Y
Sbjct: 165 IMATY 169


>gi|271962402|ref|YP_003336598.1| hypothetical protein Sros_0841 [Streptosporangium roseum DSM 43021]
 gi|270505577|gb|ACZ83855.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
          Length = 189

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 6/110 (5%)

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           AP+            L     N  +I     ++ + LT L   G T LL  GG+A+A   
Sbjct: 76  APIWREAPKVVVSRTLEKADWNTRVI---GENVVEELTALKESGATLLLF-GGSALAAHL 131

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
               ++D   ++   +++G GG P   ++ +       V    F S V L
Sbjct: 132 TEHGVIDEYQIFVHPVILG-GGKPVFQKQSH-RAGLELVESRTFDSQVVL 179


>gi|194748439|ref|XP_001956653.1| GF25318 [Drosophila ananassae]
 gi|190623935|gb|EDV39459.1| GF25318 [Drosophila ananassae]
          Length = 187

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 52/171 (30%), Gaps = 39/171 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYG--------- 50
           M    +D  FM+ +L  ++           V   IV     ++  G   +          
Sbjct: 7   MSYLHWDDYFMATSLLSAQRSK---DPVTQVGACIVDSQNRIVAIGYNGFPRNCSDDEFP 63

Query: 51  -------------------GCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQ 90
                                 HAE  A L   G    G   Y TL PC+       CA+
Sbjct: 64  WTKAKKDTKDFDPLKDKKMYVVHAEANAILNSNGATLTGTRLYTTLFPCNE------CAK 117

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
            II+ GI  ++   D    + + R  + +     +  R    + K  +  +
Sbjct: 118 LIIQSGISDILYLSDKYAEKPTYRASRRMLDAVGVGHRRHVPKQKQIIINF 168


>gi|154273008|ref|XP_001537356.1| hypothetical protein HCAG_07665 [Ajellomyces capsulatus NAm1]
 gi|150415868|gb|EDN11212.1| hypothetical protein HCAG_07665 [Ajellomyces capsulatus NAm1]
          Length = 180

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 45/135 (33%), Gaps = 26/135 (19%)

Query: 30  SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE---------------AGEEARGA 70
            V C++V +  VIG G+        G  HAE  A+EE                 E    +
Sbjct: 12  PVGCVLVHNDEVIGSGMNDTNKSMNGTRHAEFLAIEEVLRKSGMSILGAQMNVLEGLEVS 71

Query: 71  TAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           + Y   E  S  Y R    A+ I       +       D      G  +  +  +++ R 
Sbjct: 72  SIYTPSESMSTFYNRQGSVAKTI------GITFGSPGIDPPYGLTGGLFRKEAIMLLRRF 125

Query: 130 MESEGKIFLHAYLTR 144
              E +  L+++   
Sbjct: 126 YIQENERDLYSFSRF 140


>gi|154274982|ref|XP_001538342.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150414782|gb|EDN10144.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 271

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 55/194 (28%), Gaps = 70/194 (36%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK------------DGIVIGRGVT-AYGGCPHA 55
            ++ A L  ++       TN  V  +++             +  ++  G T    G  HA
Sbjct: 23  HYLRACLSLAQQSPPK-PTNFRVGAILLSRTPLSPDSPRTYNDTILSTGYTLELPGNTHA 81

Query: 56  EVQALE-----------------------------------EAGE-EARGATAYVTLEPC 79
           E  AL                                    +A E E +    YVT+EPC
Sbjct: 82  EQCALAKYAARHGVTDERIGEVLPPPPSPPLPPQSSGPGIYKAPEGEQKNIILYVTMEPC 141

Query: 80  S-----------HYG--------RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG-LQWL 119
                       H+         +         + GI +V   V +P   V      + L
Sbjct: 142 GKRLSGNMPQENHHAASVGLEASQGSAAGGARRKSGIGKVYFGVKEPGTFVGQSVGCKML 201

Query: 120 SQKGIIVDRMMESE 133
            + G+  + +   E
Sbjct: 202 YEAGVEWEVVEGME 215


>gi|134108590|ref|XP_776948.1| hypothetical protein CNBB4760 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259631|gb|EAL22301.1| hypothetical protein CNBB4760 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 350

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 56/157 (35%), Gaps = 47/157 (29%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPS---VACLIVKDGIVIGRGVT--------------- 47
           +D  FM+ A       +    +N     V  L+V+   ++  G                 
Sbjct: 203 WDTYFMTLA------SLASERSNCMKRRVGALLVRSKRILSTGYNGTPRGTRNCNQGGCS 256

Query: 48  -----AYGGCP-------HAEVQALEEAGEEARG--ATAYVTLEPCSHYGRSPPCAQFII 93
                A GG         HAE  AL EAG E  G  +  Y    PC        C+  I+
Sbjct: 257 RCNGSARGGEALNECLCLHAEENALLEAGRERIGDDSVIYCNTCPCLR------CSVKIV 310

Query: 94  ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           +CG+R VV    +    +     + L + G+++ ++ 
Sbjct: 311 QCGVREVVY---NQSYSMDEASARVLKEGGVLLRQLH 344


>gi|70983910|ref|XP_747481.1| dihydrofolate reductase family protein [Aspergillus fumigatus
           Af293]
 gi|66845107|gb|EAL85443.1| dihydrofolate reductase family protein [Aspergillus fumigatus
           Af293]
          Length = 194

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 13/113 (11%)

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
                 +++ +  P    A++ K+I +      D  K +      G   + V+GG  V  
Sbjct: 80  AKKRTFVLSRSMAPG---AYKAKDIEVEVVGSLDEAKDVFERERLGC--VYVDGG-EVVT 133

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
            F+    VD +++  + +++G G        G LE++   VR    G DV  E
Sbjct: 134 EFLRRGWVDEMVVTTAPVLLGNGIR----LFGGLEED---VRFTLVGVDVIEE 179


>gi|116250665|ref|YP_766503.1| nitrogen fixation symbiosis related protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115255313|emb|CAK06388.1| putative nitrogen fixation symbiosis related protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 151

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 48/159 (30%), Gaps = 44/159 (27%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG---------------RGVTAYGGCP 53
           RFM  AL  +R   G     P            IG               R         
Sbjct: 5   RFMEMALEEAR-AAGERGEVP------------IGAVVVVDDIAVSRSGNRTRELKDVTA 51

Query: 54  HAEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           HAE+ A+  A      E   GA  YVTLEPC        CA  I    IRR+    +DP 
Sbjct: 52  HAEIAAIRLACEALGQERLVGADLYVTLEPC------TMCAAAISFARIRRLYYGAEDPK 105

Query: 109 VRVSGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
                 G+++           +     E +    L  + 
Sbjct: 106 GGAVDNGVRFYGQPTCHHAPEVYSGFNEVQSADLLRKFF 144


>gi|13471784|ref|NP_103351.1| hypothetical protein mll1872 [Mesorhizobium loti MAFF303099]
 gi|14022528|dbj|BAB49137.1| mll1872 [Mesorhizobium loti MAFF303099]
          Length = 195

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 25/50 (50%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           DL + +  L       ++V GGA  A S I + LVD   L+ +  V+G G
Sbjct: 113 DLPREVNALKAGEGGDIIVFGGAGFASSLIAAGLVDEFQLFVNPAVLGAG 162


>gi|87124293|ref|ZP_01080142.1| putative cytidine/deoxycytidylate deaminase [Synechococcus sp.
           RS9917]
 gi|86167865|gb|EAQ69123.1| putative cytidine/deoxycytidylate deaminase [Synechococcus sp.
           RS9917]
          Length = 147

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 53/149 (35%), Gaps = 27/149 (18%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHAEVQALEEA 63
           R +  A +  R           V  +I+   G  IG G            HAE+ AL +A
Sbjct: 3   RLLRRADQLGREGE------VPVCAVILDGLGRCIGYGGNRRERQRDPLGHAELVALGQA 56

Query: 64  GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            +          T  VTLEPC      P CA  +++  + +V+    D      G  +  
Sbjct: 57  SQLRQDWRFNDCTLLVTLEPC------PMCAGALVQARMGQVIFAAWDSKRGALGSTIDL 110

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYL 142
              +       +V  +ME E +  L A+ 
Sbjct: 111 SQHRSAHHHMRVVGGVMEPEARTRLEAWF 139


>gi|228913338|ref|ZP_04076971.1| Enzyme [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228846247|gb|EEM91266.1| Enzyme [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 179

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           GG ++   F  + L+D  ++  +  ++G  G+P   ++   E +        FG  V L 
Sbjct: 118 GGGSLLREFFKNNLIDEYVVTITPHILGS-GVP-LFQDKNPEIHLTLTDTKRFGQFVNLY 175

Query: 354 Y 354
           Y
Sbjct: 176 Y 176


>gi|254441742|ref|ZP_05055235.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Octadecabacter antarcticus 307]
 gi|198251820|gb|EDY76135.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Octadecabacter antarcticus 307]
          Length = 182

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 32/121 (26%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGC-------- 52
            ++++D RF   +   + W    +     V C+IV ++  ++  G   +           
Sbjct: 31  TITNWDRRFFQLSNTIAGWSEDQSRK---VGCVIVSQENGILSTGYNGFPREVLDKPDRH 87

Query: 53  -----------PHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE  A+  A   G     +  YV L PC+       C + II+ G++
Sbjct: 88  SSLDGEKYYWFEHAERNAIYNAVRSGSALLNSRLYVNLFPCAD------CTRAIIQSGVK 141

Query: 99  R 99
            
Sbjct: 142 E 142


>gi|30260803|ref|NP_843180.1| dihydrofolate reductase family protein [Bacillus anthracis str.
           Ames]
 gi|47525928|ref|YP_017277.1| dihydrofolate reductase family protein [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49183641|ref|YP_026893.1| dihydrofolate reductase family protein [Bacillus anthracis str.
           Sterne]
 gi|165872708|ref|ZP_02217337.1| dihydrofolate reductase family protein [Bacillus anthracis str.
           A0488]
 gi|167635134|ref|ZP_02393450.1| dihydrofolate reductase family protein [Bacillus anthracis str.
           A0442]
 gi|167640943|ref|ZP_02399201.1| dihydrofolate reductase family protein [Bacillus anthracis str.
           A0193]
 gi|170689033|ref|ZP_02880233.1| dihydrofolate reductase family protein [Bacillus anthracis str.
           A0465]
 gi|170708506|ref|ZP_02898948.1| dihydrofolate reductase family protein [Bacillus anthracis str.
           A0389]
 gi|177652802|ref|ZP_02935175.1| dihydrofolate reductase family protein [Bacillus anthracis str.
           A0174]
 gi|190568551|ref|ZP_03021457.1| dihydrofolate reductase family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227816481|ref|YP_002816490.1| dihydrofolate reductase family protein [Bacillus anthracis str. CDC
           684]
 gi|229602007|ref|YP_002865247.1| dihydrofolate reductase family protein [Bacillus anthracis str.
           A0248]
 gi|254684274|ref|ZP_05148134.1| dihydrofolate reductase family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254722078|ref|ZP_05183867.1| dihydrofolate reductase family protein [Bacillus anthracis str.
           A1055]
 gi|254738739|ref|ZP_05196442.1| dihydrofolate reductase family protein [Bacillus anthracis str.
           Western North America USA6153]
 gi|254742049|ref|ZP_05199736.1| dihydrofolate reductase family protein [Bacillus anthracis str.
           Kruger B]
 gi|254754964|ref|ZP_05206998.1| dihydrofolate reductase family protein [Bacillus anthracis str.
           Vollum]
 gi|254762305|ref|ZP_05214149.1| dihydrofolate reductase family protein [Bacillus anthracis str.
           Australia 94]
 gi|30254252|gb|AAP24666.1| dihydrofolate reductase family protein [Bacillus anthracis str.
           Ames]
 gi|47501076|gb|AAT29752.1| dihydrofolate reductase family protein [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49177568|gb|AAT52944.1| dihydrofolate reductase family protein [Bacillus anthracis str.
           Sterne]
 gi|164711569|gb|EDR17117.1| dihydrofolate reductase family protein [Bacillus anthracis str.
           A0488]
 gi|167511163|gb|EDR86551.1| dihydrofolate reductase family protein [Bacillus anthracis str.
           A0193]
 gi|167529393|gb|EDR92144.1| dihydrofolate reductase family protein [Bacillus anthracis str.
           A0442]
 gi|170126627|gb|EDS95512.1| dihydrofolate reductase family protein [Bacillus anthracis str.
           A0389]
 gi|170667018|gb|EDT17781.1| dihydrofolate reductase family protein [Bacillus anthracis str.
           A0465]
 gi|172081836|gb|EDT66905.1| dihydrofolate reductase family protein [Bacillus anthracis str.
           A0174]
 gi|190560345|gb|EDV14324.1| dihydrofolate reductase family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227003375|gb|ACP13118.1| dihydrofolate reductase family protein [Bacillus anthracis str. CDC
           684]
 gi|229266415|gb|ACQ48052.1| dihydrofolate reductase family protein [Bacillus anthracis str.
           A0248]
          Length = 173

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           GG ++   F  + L+D  ++  +  ++G  G+P   ++   E +        FG  V L 
Sbjct: 112 GGGSLLREFFKNNLIDEYVVTITPHILGS-GVP-LFQDKNPEIHLTLTDTKRFGQFVNLY 169

Query: 354 Y 354
           Y
Sbjct: 170 Y 170


>gi|65318075|ref|ZP_00391034.1| COG0262: Dihydrofolate reductase [Bacillus anthracis str. A2012]
          Length = 179

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           GG ++   F  + L+D  ++  +  ++G  G+P   ++   E +        FG  V L 
Sbjct: 118 GGGSLLREFFKNNLIDEYVVTITPHILGS-GVP-LFQDKNPEIHLTLTDTKRFGQFVNLY 175

Query: 354 Y 354
           Y
Sbjct: 176 Y 176


>gi|110634545|ref|YP_674753.1| bifunctional deaminase-reductase-like [Mesorhizobium sp. BNC1]
 gi|110285529|gb|ABG63588.1| bifunctional deaminase-reductase-like protein [Chelativorans sp.
           BNC1]
          Length = 183

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 33/83 (39%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           D  + +  L       + V G A +  S + + LVD   +  + +V+G G      ++  
Sbjct: 100 DATEAVRALKAEDGKDVFVFGSADMLDSLLKAGLVDEYRICVAPVVLGGGNPLFKPQDQQ 159

Query: 334 LEKNFMCVRRDYFGSDVCLEYIG 356
           L+ +    R    G+ +    +G
Sbjct: 160 LKMHLQGTRPLKTGAVIVTYQVG 182


>gi|325922230|ref|ZP_08184016.1| cytosine/adenosine deaminase [Xanthomonas gardneri ATCC 19865]
 gi|325547300|gb|EGD18368.1| cytosine/adenosine deaminase [Xanthomonas gardneri ATCC 19865]
          Length = 151

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 51/143 (35%), Gaps = 19/143 (13%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR 68
           A+  +R   GL      +   +   DG ++G G            H E  A  +AG + R
Sbjct: 14  AIAEAR--QGLAEGGIPIGAALYHNDGRLLGCGHNRRVQENDPSVHGETDAFRKAGRQRR 71

Query: 69  --GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
                   TL PC +      C+  + +  I  VVV     +      G+ WL + G+ V
Sbjct: 72  YKDTIMVTTLAPCWY------CSGLVRQFNIGTVVVG----ESVTFQGGVSWLREHGVNV 121

Query: 127 DRMMESEGKIFLHAYLTRQVEKR 149
             +   E    L  Y++   +  
Sbjct: 122 IDLQSQECIDLLGGYISANPDVW 144


>gi|321252394|ref|XP_003192392.1| dCMP deaminase [Cryptococcus gattii WM276]
 gi|317458860|gb|ADV20605.1| dCMP deaminase, putative [Cryptococcus gattii WM276]
          Length = 327

 Score = 45.3 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 55/157 (35%), Gaps = 47/157 (29%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPS---VACLIVKDGIVIGRGVT--------------- 47
           +D  FM+ A       +    +N     V  L+V+   ++  G                 
Sbjct: 180 WDTYFMTLA------SLASERSNCMKRRVGALLVRSKRILSTGYNGTPRGTRNCNQGGCS 233

Query: 48  -----AYGGCP-------HAEVQALEEAGEEARG--ATAYVTLEPCSHYGRSPPCAQFII 93
                A GG         HAE  AL EAG E  G  +  Y    PC        C+  I+
Sbjct: 234 RCNGSARGGEALNECLCLHAEENALLEAGRERIGDDSVIYCNTCPCLR------CSVKIV 287

Query: 94  ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
           +CG+R VV    +    +     + L + G+ + ++ 
Sbjct: 288 QCGVREVVY---NQSYSMDEASARVLKEGGVTLRQLH 321


>gi|302038118|ref|YP_003798440.1| hypothetical protein NIDE2810 [Candidatus Nitrospira defluvii]
 gi|300606182|emb|CBK42515.1| conserved protein of unknown function [Candidatus Nitrospira
           defluvii]
          Length = 184

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P  + +              +I  +  D   +   +     RG  ++ + GG  +   F 
Sbjct: 76  PTWVFSSRG----LSRVEGADIRFVAGDVCPVHAQMRE-AARG-RNVWLVGGGELVGQFY 129

Query: 304 NSRLVDSIILYRSQIVIGEG 323
           ++ L+D +I+    + +G G
Sbjct: 130 DAGLLDELIVQVGSVTLGSG 149


>gi|301064678|ref|ZP_07205067.1| cytidine and deoxycytidylate deaminase zinc-binding region [delta
           proteobacterium NaphS2]
 gi|300441220|gb|EFK05596.1| cytidine and deoxycytidylate deaminase zinc-binding region [delta
           proteobacterium NaphS2]
          Length = 150

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 40/125 (32%), Gaps = 40/125 (32%)

Query: 31  VACLIVKDGIVIGRGV---------------------------TAYGGCPHAEVQALEEA 63
           V  ++VK+  ++  G                                   HAE  A+ +A
Sbjct: 30  VGAILVKEKRILATGYNGAPAGLKHCVEVGCLRENGSIPSGTRHELCRALHAEQNAIVQA 89

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G    G+T Y T +PC        C++ +I  GI+R+       D          L 
Sbjct: 90  ARYGISIAGSTLYCTNKPCII------CSKMLINAGIKRIYFDQGYDDELAD----AILD 139

Query: 121 QKGII 125
           + GI 
Sbjct: 140 EAGIE 144


>gi|170289094|ref|YP_001739332.1| dihydrofolate reductase-like protein [Thermotoga sp. RQ2]
 gi|170176597|gb|ACB09649.1| dihydrofolate reductase-like protein [Thermotoga sp. RQ2]
          Length = 169

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGY 333
              ++  L G+G   + V GG  V   F+  +LVD + +     V G  GIP   E EGY
Sbjct: 83  PGDVVKFLEGKGYERVAVIGGKTVFTEFLREKLVDELFVTVEPYVFG-KGIPFFDEFEGY 141

Query: 334 LEKNFMCVRR 343
                + +RR
Sbjct: 142 FPLKLLEMRR 151


>gi|16081128|ref|NP_391956.1| oxidoreductase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221312059|ref|ZP_03593906.1| hypothetical protein Bsubs1_22011 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221316384|ref|ZP_03598189.1| hypothetical protein BsubsN3_21917 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221321297|ref|ZP_03602591.1| hypothetical protein BsubsJ_21870 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221325580|ref|ZP_03606874.1| hypothetical protein BsubsS_22026 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|586838|sp|P37508|YYAP_BACSU RecName: Full=Uncharacterized protein yyaP
 gi|467361|dbj|BAA05207.1| unknown [Bacillus subtilis]
 gi|2636623|emb|CAB16113.1| putative oxidoreductase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 188

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 3/105 (2%)

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           +V      V +    + +   I+ +   L+++   L       + + GGA++  +FIN  
Sbjct: 79  LVHSKKKYVFSRTQNEIDNQAIFINDNILEEV-NKLKKNPGKDIWLYGGASLITTFINLG 137

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           LVD   L    +V+GEG       +     N   V    F S V 
Sbjct: 138 LVDEFRLSIHPVVLGEG--KPLFIDVKQRINLKMVNTRTFSSGVV 180


>gi|284988759|ref|YP_003407313.1| bifunctional deaminase-reductase domain-containing protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284062004|gb|ADB72942.1| bifunctional deaminase-reductase domain protein [Geodermatophilus
           obscurus DSM 43160]
          Length = 212

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 12/104 (11%)

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLK----------KLLTILVGRGVTSLLVEGGAAV 298
           TE+D    AL  R K++        D              +  L  R    L V G   +
Sbjct: 77  TEDDPVAEALNTRTKHVASRTLTSLDWSGARLLEGDVVDAVRALRDRDGGELQVHGSPGL 136

Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
             + + + LVD + L  + +V+G+G       +G +  ++    
Sbjct: 137 VQTLLRADLVDELRLVVAPVVLGQG--KRLFGDGAIAWSWRLTS 178


>gi|104773493|ref|YP_618473.1| putative dCMP deaminase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103422574|emb|CAI97177.1| Putative dCMP deaminase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 160

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 51/144 (35%), Gaps = 34/144 (23%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------TAYGGCP 53
             FM  AL  ++     T     V  ++VKD  ++  G                      
Sbjct: 10  QYFMMQALVIAQRS---TCDRALVGSVLVKDKRILSTGYNGSVSGQDHCDDVGHQLVDGH 66

Query: 54  -----HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                H+E+ +L    + G        YVT  PC +      C + +++ G+ ++    D
Sbjct: 67  CVRTIHSEMNSLISCAKNGVSTDDTEIYVTHFPCYN------CTKHLLQAGVIKINYYYD 120

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRM 129
             D  ++   +Q L   G+  +++
Sbjct: 121 YHDSPLA---IQLLRDSGVPYEQI 141


>gi|315050754|ref|XP_003174751.1| hypothetical protein MGYG_02281 [Arthroderma gypseum CBS 118893]
 gi|311340066|gb|EFQ99268.1| hypothetical protein MGYG_02281 [Arthroderma gypseum CBS 118893]
          Length = 232

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 53/158 (33%), Gaps = 44/158 (27%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIV------------KDGIVIGRGVT-AYGGCPHA 55
           +++S  L  +        TN  V  +++            K+  ++  G T    G  HA
Sbjct: 14  QYLSQCLELASQSPPK-PTNFRVGAILLLRLYPTRVNPELKE-TILSTGYTLELRGNTHA 71

Query: 56  EVQALE-----------------EAGEEARGATA----YVTLEPCS-HYGRSPPCAQFII 93
           E                      E   +  G  A    YVT+EPC      + PC   II
Sbjct: 72  EQCCFAKLASHYGVPEEEVGKVLEQKRKEEGGEAQMELYVTMEPCGKRLSDNKPCVDRII 131

Query: 94  E------CGIRRVVVCVDDPDVRVSGRG-LQWLSQKGI 124
           E      CGI R+   V +P   V      + L + G+
Sbjct: 132 ETRKDGKCGIDRIYFGVKEPGTFVGQSQGCKKLDEAGV 169


>gi|195348175|ref|XP_002040626.1| GM22266 [Drosophila sechellia]
 gi|194122136|gb|EDW44179.1| GM22266 [Drosophila sechellia]
          Length = 191

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 46/155 (29%), Gaps = 40/155 (25%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYG-------------- 50
           +D  FM+ +L  ++           V   IV     ++  G   +               
Sbjct: 28  WDDYFMATSLLSAKRSK---DPVTQVGACIVDSQNRIVAIGYNGFPRNCSDDVFPWSKAT 84

Query: 51  --------------GCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                            HAE  A L   G    G   Y TL PC+       CA+ II+ 
Sbjct: 85  KRSKKDDPLEDKKMYVVHAEANAILNTNGMSLSGTRLYTTLFPCNE------CAKLIIQV 138

Query: 96  GIRRVVVCVDDPD-VRVSGRGLQWLSQKGIIVDRM 129
           GI +V+   D            + L   G+   R 
Sbjct: 139 GISQVLYLSDKYAYKPKYRASKRMLDAVGVEYKRH 173


>gi|229916954|ref|YP_002885600.1| bifunctional deaminase-reductase domain protein [Exiguobacterium
           sp. AT1b]
 gi|229468383|gb|ACQ70155.1| bifunctional deaminase-reductase domain protein [Exiguobacterium
           sp. AT1b]
          Length = 173

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 11/111 (9%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P  I+T   D              +      +++L+  L       + + GG  V  + +
Sbjct: 72  PNYILTRQADRE---------AEHVTFTDEPIEELINRLKQEVDQDIWLIGGGEVIKAAM 122

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
              L+D   +  + +V+GE GIP    EG  E       +   G  +   Y
Sbjct: 123 EHDLIDRYEIAIAPVVLGE-GIP-LFPEGTKETKLRLTGQRASGQFIMATY 171


>gi|113867822|ref|YP_726311.1| dihydrofolate reductase [Ralstonia eutropha H16]
 gi|113526598|emb|CAJ92943.1| dihydrofolate reductase [Ralstonia eutropha H16]
          Length = 178

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           A   PV++++            +  +    C      + ++ L   G+  + V+GG  + 
Sbjct: 65  AYDRPVLVLSRKLAGTPVPEGLQGKVRFSDC---TPTETMSQLEAAGMRRVYVDGG-QLV 120

Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323
            SF+   L+  +++    ++IG G
Sbjct: 121 QSFLREGLIADLVVTTVPVLIGAG 144


>gi|66392081|ref|YP_239303.1| putative deoxycytidylate deaminase [Xanthomonas phage Xp15]
 gi|62529191|gb|AAX84874.1| putative deoxycytidylate deaminase [Xanthomonas phage Xp15]
          Length = 160

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 32/106 (30%)

Query: 31  VACLIVKD-GIVIGRGV------------TAYGG-------------CPHAEVQALEEAG 64
           V C++V D   V+  G                 G               HAE  AL +  
Sbjct: 19  VGCILVDDLNHVLATGYNGTPRNVAHCGSHICPGMNASSGTQLDGCMATHAEQNALLQCM 78

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           +  +  T Y T +PC        C + ++  G + +V     P+  
Sbjct: 79  DVEKIHTVYCTTQPCL------TCTKLLMNTGAKWIVYLDAYPNSG 118


>gi|126434166|ref|YP_001069857.1| deaminase-reductase domain-containing protein [Mycobacterium sp.
           JLS]
 gi|126233966|gb|ABN97366.1| bifunctional deaminase-reductase domain protein [Mycobacterium sp.
           JLS]
          Length = 188

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 2/88 (2%)

Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
            +  D  +++T L      +L V  GA +A   + + LVD   +  + + +G G    P 
Sbjct: 101 LERGDPVEVVTRLKAETDGNLEV-AGATLAAPIVQAGLVDEYRIVLAPVAVGGGTPFFPT 159

Query: 330 EEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
              ++    +  R    G+ V L Y  K
Sbjct: 160 LPSWISLRLLENRTFPCGT-VLLRYEAK 186


>gi|163793644|ref|ZP_02187619.1| Dihydrofolate reductase [alpha proteobacterium BAL199]
 gi|159181446|gb|EDP65961.1| Dihydrofolate reductase [alpha proteobacterium BAL199]
          Length = 172

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
           D+  L+  L   G   + + GGA  A + I+   +D++ L+   +++GE G+P  L +G
Sbjct: 91  DIAGLIAELRDEGAQ-VWIVGGAETAAACISMGAIDTVELFIMPVLLGE-GVPLFLGDG 147


>gi|325849001|ref|ZP_08170511.1| putative ComE operon protein 2 [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480645|gb|EGC83707.1| putative ComE operon protein 2 [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 146

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 30/128 (23%)

Query: 15  LRFSRW-HVGLTSTNPSVACLIVKD-GIVIGRGV---------------TAYGG----CP 53
           ++ +    +  T     V C++V +   +I  G                T   G      
Sbjct: 13  IKLAHMVALRGTCDRAYVGCVLVNNENRIISTGYNGSIKGNPHCDEVGHTMRDGHCIATI 72

Query: 54  HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           HAE+ AL    + G   + +  YVT  PC +      C + +I+ G++ +    D     
Sbjct: 73  HAEMNALLYCAKEGISVKNSICYVTHFPCLN------CTKSLIQAGVKEIYYTNDYRIDP 126

Query: 111 VSGRGLQW 118
            +   L+ 
Sbjct: 127 YAIELLEK 134


>gi|300812075|ref|ZP_07092523.1| putative ComE operon protein 2 [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496914|gb|EFK31988.1| putative ComE operon protein 2 [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 174

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 51/144 (35%), Gaps = 34/144 (23%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------TAYGGCP 53
             FM  AL  ++     T     V  ++VKD  ++  G                      
Sbjct: 24  QYFMMQALVIAQRS---TCDRALVGSVLVKDKRILSTGYNGSVSGQDHCDDVGHQLVDGH 80

Query: 54  -----HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                H+E+ +L    + G        YVT  PC +      C + +++ G+ ++    D
Sbjct: 81  CVRTIHSEMNSLISCAKNGVSTDNTEIYVTHFPCYN------CTKHLLQAGVIKINYYYD 134

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRM 129
             D  ++   +Q L   G+  +++
Sbjct: 135 YHDSPLA---IQLLRDSGVPYEQI 155


>gi|189502591|ref|YP_001958308.1| hypothetical protein Aasi_1257 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189498032|gb|ACE06579.1| hypothetical protein Aasi_1257 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 183

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           +L KL+  L  +    + +EGG  V        LVD  I+    I++G G
Sbjct: 96  ELTKLVEELKSKFSKGIYIEGGGEVISELRKDHLVDEYIISIIPILLGSG 145


>gi|302383496|ref|YP_003819319.1| CMP/dCMP deaminase zinc-binding protein [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302194124|gb|ADL01696.1| CMP/dCMP deaminase zinc-binding protein [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 150

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 34/90 (37%), Gaps = 17/90 (18%)

Query: 30  SVACLIVKD--GIVIGRGVTAY--GGCPHAEVQALEEAGE-------EARGATAYVTLEP 78
            V  +IV +  G V+  G  A   G  P A  +                 G T YVTLEP
Sbjct: 18  PVGAVIVDETTGTVVATGANAPISGHDPTAHAEIQAIRAAAAATGNYRLTGLTLYVTLEP 77

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           C+       CA  I    I RVV   DDP 
Sbjct: 78  CAM------CAGAISHARIGRVVWGADDPK 101


>gi|299137017|ref|ZP_07030200.1| bifunctional deaminase-reductase domain protein [Acidobacterium sp.
           MP5ACTX8]
 gi|298601532|gb|EFI57687.1| bifunctional deaminase-reductase domain protein [Acidobacterium sp.
           MP5ACTX8]
          Length = 176

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 6/86 (6%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D++  +  L  +    + V  G  +A S  +  L+D   LY   IV+G G    P   
Sbjct: 95  GDDIEATIRRLKEQQAGEIDV-AGPDLAGSLTDLGLIDEYRLYLRPIVLGRGK---PFFS 150

Query: 332 GYLEKNFMCVRRDYFGSDVC-LEYIG 356
           G        V  D    DV  L YI 
Sbjct: 151 G-PRPPLRLVASDLIAEDVIRLTYIP 175


>gi|93279969|pdb|2GD9|A Chain A, Crystal Structure Of A Putative Dihydrofolate Reductase
           (Bsu40760, Yyap) From Bacillus Subtilis At 2.30 A
           Resolution
 gi|93279970|pdb|2GD9|B Chain B, Crystal Structure Of A Putative Dihydrofolate Reductase
           (Bsu40760, Yyap) From Bacillus Subtilis At 2.30 A
           Resolution
          Length = 189

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 3/105 (2%)

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           +V      V +    + +   I+ +   L+++   L       + + GGA++  +FIN  
Sbjct: 80  LVHSKKKYVFSRTQNEIDNQAIFINDNILEEV-NKLKKNPGKDIWLYGGASLITTFINLG 138

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           LVD   L    +V+GEG       +     N   V    F S V 
Sbjct: 139 LVDEFRLSIHPVVLGEG--KPLFIDVKQRINLKXVNTRTFSSGVV 181


>gi|260425752|ref|ZP_05779732.1| cytidine/deoxycytidylate deaminase family protein [Citreicella sp.
           SE45]
 gi|260423692|gb|EEX16942.1| cytidine/deoxycytidylate deaminase family protein [Citreicella sp.
           SE45]
          Length = 149

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 33/93 (35%), Gaps = 15/93 (16%)

Query: 38  DGIVIGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPC 88
           DG V+               HAE+ AL  A      E   G   YVTLEPC      P C
Sbjct: 33  DGRVVAAAGNRTRELNDPSAHAEILALRAACADAGSERLPGHDLYVTLEPC------PMC 86

Query: 89  AQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           A  I    + R+     DP      +G +  + 
Sbjct: 87  AAAISFARVARLYYGAADPKSGGVAQGARVYAH 119


>gi|172057759|ref|YP_001814219.1| CMP/dCMP deaminase zinc-binding [Exiguobacterium sibiricum 255-15]
 gi|171990280|gb|ACB61202.1| CMP/dCMP deaminase zinc-binding [Exiguobacterium sibiricum 255-15]
          Length = 194

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 39/117 (33%), Gaps = 20/117 (17%)

Query: 35  IVKDGIVI-----GRGVTA--YGGCPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGR 84
           IV +G V                   HAE+ AL         AR ATAYVT  PC     
Sbjct: 84  IVHNGQVFYRCDNQEEHHEWSKMNEIHAEINALGKLAADSTSARHATAYVTHSPCH---- 139

Query: 85  SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
              C+  +I   I RVV           G GL  + Q  I V     +E       +
Sbjct: 140 --ACSLALIASKIDRVVYSTGYE----YGDGLTLMRQSEIEVLHRPLTEEYFLERIF 190


>gi|33861475|ref|NP_893036.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|33634052|emb|CAE19377.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 165

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 16/99 (16%)

Query: 33  CLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAG-----EEARGATAYVTLEPCSHY 82
            +I+  +G  IGRG            HAE+ AL +A            +  V LEPC   
Sbjct: 40  AVIIDENGRCIGRGSNKREINNDPLGHAELIALRQASWIKNDWRFNECSIIVNLEPC--- 96

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                CA  +++  + +V+    D      G  +     
Sbjct: 97  ---TMCAAALVQARMGQVIYGTKDDKRGGFGGTIDLSKH 132


>gi|83767090|dbj|BAE57230.1| unnamed protein product [Aspergillus oryzae]
          Length = 111

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 31/96 (32%), Gaps = 31/96 (32%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-- 53
           ++D  FM  A   +            V C++V++  VI  G              GCP  
Sbjct: 14  NWDQYFMQLA-SLAAQRSNCMKR--RVGCVLVRECRVISTGYNGTPRHLRNCNEAGCPRC 70

Query: 54  ----------------HAEVQALEEAG-EEARGATA 72
                           HAE  AL EAG E  R  T 
Sbjct: 71  NRGEGGGVGLSTCLCLHAEENALLEAGRERIREGTI 106


>gi|316932264|ref|YP_004107246.1| bifunctional deaminase-reductase domain-containing protein
           [Rhodopseudomonas palustris DX-1]
 gi|315599978|gb|ADU42513.1| bifunctional deaminase-reductase domain protein [Rhodopseudomonas
           palustris DX-1]
          Length = 178

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           PV++++ +       A     + I     +  ++++ +L   G   + V+GG  V  SF+
Sbjct: 69  PVLVLSASLKDQDIPADLAGKVRI---SDKSPEQVMEMLEAEGHRRVYVDGG-KVIQSFL 124

Query: 304 NSRLVDSIILYRSQIVIGEG 323
            +RL+  + + +  +++GEG
Sbjct: 125 RARLIADMTITQVPVLLGEG 144


>gi|282863353|ref|ZP_06272412.1| bifunctional deaminase-reductase domain protein [Streptomyces sp.
           ACTE]
 gi|282561688|gb|EFB67231.1| bifunctional deaminase-reductase domain protein [Streptomyces sp.
           ACTE]
          Length = 188

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-KNFMCVRRDYF-GSDVC 351
           GGA +A + + + L+D  ++    +++G G   +P         N   V    F G  V 
Sbjct: 125 GGATLAGAAMRAGLIDEYVIAAHPVLVGSG---TPFFTALDSWVNLNLVETRTFPGGVVL 181

Query: 352 LEY 354
             Y
Sbjct: 182 TRY 184


>gi|169349996|ref|ZP_02866934.1| hypothetical protein CLOSPI_00736 [Clostridium spiroforme DSM 1552]
 gi|169293209|gb|EDS75342.1| hypothetical protein CLOSPI_00736 [Clostridium spiroforme DSM 1552]
          Length = 176

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 22/47 (46%)

Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           +L+  L  +   S+ + GGA +    I   L+D   +     ++G+G
Sbjct: 98  ELVKDLKQKNGKSIWICGGAKIIQPLIQDNLIDEYYISVIPTILGDG 144


>gi|296452365|ref|ZP_06894067.1| dihydrofolate reductase family protein [Clostridium difficile
           NAP08]
 gi|296877714|ref|ZP_06901742.1| dihydrofolate reductase family protein [Clostridium difficile
           NAP07]
 gi|296258794|gb|EFH05687.1| dihydrofolate reductase family protein [Clostridium difficile
           NAP08]
 gi|296431336|gb|EFH17155.1| dihydrofolate reductase family protein [Clostridium difficile
           NAP07]
          Length = 193

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 272 CRDLKKLLTILV-GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
             + KKL+  +   +    + + GG  +   F+   L+D   +Y   I++G G   S  +
Sbjct: 107 NLEPKKLIEQIGREKDKKDIWIVGGGDIVKLFMKDNLIDDYYIYILPIILGRG--ISLFK 164

Query: 331 EGYLEKNFMCVRRDYFGSDVCLEYIGK 357
            G  + N    +    G  V LEY  K
Sbjct: 165 SGIDKTNLNFKKASNIGELVKLEYSKK 191


>gi|255656804|ref|ZP_05402213.1| YwjB [Clostridium difficile QCD-23m63]
          Length = 187

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 272 CRDLKKLLTILV-GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
             + KKL+  +   +    + + GG  +   F+   L+D   +Y   I++G G   S  +
Sbjct: 101 NLEPKKLIEQIGREKDKKDIWIVGGGDIVKLFMKDNLIDDYYIYILPIILGRG--ISLFK 158

Query: 331 EGYLEKNFMCVRRDYFGSDVCLEYIGK 357
            G  + N    +    G  V LEY  K
Sbjct: 159 SGIDKTNLNFKKASNIGELVKLEYSKK 185


>gi|195591779|ref|XP_002085616.1| GD14864 [Drosophila simulans]
 gi|194197625|gb|EDX11201.1| GD14864 [Drosophila simulans]
          Length = 187

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 46/155 (29%), Gaps = 40/155 (25%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYG-------------- 50
           +D  FM+ +L  ++           V   IV     ++  G   +               
Sbjct: 28  WDDYFMATSLLSAKRSK---DPVTQVGACIVDSQNRIVAIGYNGFPRNCSDDVFPWSKAP 84

Query: 51  --------------GCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
                            HAE  A L   G    G   Y TL PC+       CA+ II+ 
Sbjct: 85  KRSKKDDLLEDKKMYVVHAEANAILNTKGMSLSGTRLYTTLFPCNE------CAKLIIQV 138

Query: 96  GIRRVVVCVDDP-DVRVSGRGLQWLSQKGIIVDRM 129
           GI +V+   D            + L   G+   R 
Sbjct: 139 GISQVLYLSDKYAHKPKYLASKRMLDAVGVEYKRH 173


>gi|299140417|ref|ZP_07033573.1| bifunctional deaminase-reductase domain protein [Acidobacterium sp.
           MP5ACTX8]
 gi|298597601|gb|EFI53783.1| bifunctional deaminase-reductase domain protein [Acidobacterium sp.
           MP5ACTX8]
          Length = 190

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 7/81 (8%)

Query: 272 CRDLKKLLTILVGRGVTSLLVE-GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
             D+  L+  L  + V  +  E GG  +A +  +  L+D   LY   +V+G G    P  
Sbjct: 97  ADDIDALIRGLKAQLVGEI--EAGGPDLAGALTDLGLIDEYRLYLHPVVLGSGK---PFF 151

Query: 331 EGYLEKNFMCVRRDYFGSDVC 351
            G L      V  +    DV 
Sbjct: 152 SGPLPS-LRLVANELIAEDVI 171


>gi|226306946|ref|YP_002766906.1| hypothetical protein RER_34590 [Rhodococcus erythropolis PR4]
 gi|226186063|dbj|BAH34167.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 213

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 5/77 (6%)

Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
              +  L    V  + + GG  +A S   + LVD   L+   + +G GG+P+ L  G L 
Sbjct: 136 ADAVRALESEAVQDISI-GGPTIAASAFAAGLVDECRLFVCPVSVG-GGLPA-LPRGRL- 191

Query: 336 KNFMCVRRDYFGSDVCL 352
            +   +    F S V  
Sbjct: 192 -DLRLLEEKTFDSGVIY 207


>gi|153815751|ref|ZP_01968419.1| hypothetical protein RUMTOR_01989 [Ruminococcus torques ATCC 27756]
 gi|317501315|ref|ZP_07959518.1| dihydrofolate reductase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088348|ref|ZP_08337267.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145846992|gb|EDK23910.1| hypothetical protein RUMTOR_01989 [Ruminococcus torques ATCC 27756]
 gi|316897279|gb|EFV19347.1| dihydrofolate reductase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330408592|gb|EGG88058.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 176

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 24/56 (42%)

Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           I+   ++  +L+  L       + + GGA +    + + ++D   +     ++G G
Sbjct: 89  IHFVNKNPVELIKELRKENGNGIWICGGANLIQQLVRADIIDCYYITVIPTILGSG 144


>gi|49480227|ref|YP_034907.1| dihydrofolate reductase family protein [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|49331783|gb|AAT62429.1| conserved hypothetical protein, possible dihydrofolate reductase
           family protein [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 173

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           GG ++   F  + L+D  ++  +  ++G  G+P   ++   E +        FG  V L 
Sbjct: 112 GGGSLLREFFKNNLIDEYVVTITPHILGA-GVP-LFQDKNPEIHLTLTDTKRFGQFVNLY 169

Query: 354 Y 354
           Y
Sbjct: 170 Y 170


>gi|15890403|ref|NP_356075.1| hypothetical protein Atu4585 [Agrobacterium tumefaciens str. C58]
 gi|15158626|gb|AAK88860.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 175

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 9/98 (9%)

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
               VI+VT              N         D+  L+  L       + + GG  +  
Sbjct: 69  GDQRVIVVTSRPIEEPKGPLEVYN---------DVGSLIRELRALDDGDVWMLGGGKLQM 119

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
           +F+    +D I +Y    ++G G    PL         
Sbjct: 120 AFLERGALDEIEIYVIPEILGSGEPLFPLTGHRASPTL 157


>gi|328957258|ref|YP_004374644.1| enzyme associated to DNA transport (competence) [Carnobacterium sp.
           17-4]
 gi|328673582|gb|AEB29628.1| enzyme associated to DNA transport (competence) [Carnobacterium sp.
           17-4]
          Length = 172

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 28/110 (25%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP-------------------HAEVQALEEA---GEEAR 68
           V   IV++  +I  G                           HAE+ A+ +    G +  
Sbjct: 31  VGATIVREKRIIAGGYNGSVSGDAHCIDDGCYIVDGHCLRTIHAEMNAILQCAKFGAQTE 90

Query: 69  GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           GA  YVT  PC        C + II+ GI ++    D  +   + + ++ 
Sbjct: 91  GAEIYVTHFPCLQ------CTKMIIQAGITKINYLEDYHNNDYALKLIEQ 134


>gi|284161514|ref|YP_003400137.1| CMP/dCMP deaminase zinc-binding protein [Archaeoglobus profundus
           DSM 5631]
 gi|284011511|gb|ADB57464.1| CMP/dCMP deaminase zinc-binding protein [Archaeoglobus profundus
           DSM 5631]
          Length = 563

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 13/82 (15%)

Query: 54  HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           HAE  A+ +A   G    GAT Y T  PC        CA+ II  GI++VV   +  D  
Sbjct: 486 HAEQNAIIQAAKFGICIDGATMYTTHCPCI------TCAKMIINAGIKKVVYGKEYAD-- 537

Query: 111 VSGRGLQWLSQKGIIVDRMMES 132
              RGL+ L + G+ V  +   
Sbjct: 538 --KRGLELLKEAGVEVVYLPIE 557



 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 4/45 (8%)

Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCPH 54
          M  AL  ++    L      V  +I+KD  ++  G      G  H
Sbjct: 1  MELALVVAKRSTCLRQK---VGAIIIKDKRILATGYNGAPSGMAH 42


>gi|226304955|ref|YP_002764913.1| deaminase [Rhodococcus erythropolis PR4]
 gi|226184070|dbj|BAH32174.1| putative deaminase [Rhodococcus erythropolis PR4]
          Length = 121

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 20/111 (18%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
            S  DA  +S AL  +R  + L      +  ++  D  V+GR  T          HA++Q
Sbjct: 2   FSPRDA--LSLALDVAREGMELGEM--PIGAVVFDDDRVLGRAYTQERALGRRVVHADLQ 57

Query: 59  ALEEAGE-----EARG-ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           A+ +A E      A G  T  V LEPC        C    I  G+ RV   
Sbjct: 58  AILQADEALGFTRASGELTLAVNLEPCLM------CMGAAITLGVSRVWFA 102


>gi|158337465|ref|YP_001518640.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Acaryochloris marina MBIC11017]
 gi|158307706|gb|ABW29323.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Acaryochloris marina MBIC11017]
          Length = 181

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            + + ++  +  DL + L    G+ +   L  GG  +A + + ++ +D IIL  + ++ G
Sbjct: 82  DEAVTVVADELNDLVRNLKAESGQDIY--LC-GGGELAKTLLAAQHIDEIILKVNPVLFG 138

Query: 322 EGGIP--SPLEEGYLEKNFMCVRRDYFGSDVCL 352
             GIP  +  +             + +G+ + L
Sbjct: 139 -TGIPLFASGQPSIPTTRLQLTDHNIYGNGLVL 170


>gi|213409075|ref|XP_002175308.1| tRNA-specific adenosine deaminase subunit tad2 [Schizosaccharomyces
           japonicus yFS275]
 gi|212003355|gb|EEB09015.1| tRNA-specific adenosine deaminase subunit tad2 [Schizosaccharomyces
           japonicus yFS275]
          Length = 365

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 47/157 (29%), Gaps = 38/157 (24%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
           +S   +FM  AL  +   +                            G  HAE+ A+E+ 
Sbjct: 214 NSVHHQFMKEALNMAELALK----------------------WNEVPGIQHAELVAVEDI 251

Query: 64  GEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
            +          T YVT+EPC        CA  + +  I+ V     +      G     
Sbjct: 252 LKRYPPSIFEEVTLYVTVEPCLM------CAAALKQLHIKEVYFGCGNDRFGGCGSVFSI 305

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRS 150
                +     +   +  +E  + +  +  ++  K  
Sbjct: 306 NKDPSVDPPYPVYPGLYRAEAIMLMRQFYVQENTKAP 342


>gi|323488084|ref|ZP_08093336.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Planococcus donghaensis MPA1U2]
 gi|323398236|gb|EGA91030.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Planococcus donghaensis MPA1U2]
          Length = 178

 Score = 44.9 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 9/87 (10%)

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
           + T     +++ T  +        +K N+  I  D     K++  L       + + GG 
Sbjct: 67  LDTYDNKKILVATTRE------LEKKGNVEFIQGDVC---KVVLALKETEGKDIWLYGGG 117

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +A  F+ + LVD  I+     ++G G
Sbjct: 118 ILADPFMKANLVDEYIIGIIPTILGRG 144


>gi|297200616|ref|ZP_06918013.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sviceus ATCC 29083]
 gi|197709747|gb|EDY53781.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sviceus ATCC 29083]
          Length = 221

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 8/96 (8%)

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
                ++         PV +VT           R       + +      LL      G 
Sbjct: 99  LAWPEEAPF-----HTPVFVVT---HTERDPWERPGGTTFHFVNDGIESALLQAREAAGD 150

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
             + + GGA     +++S L+D   +  + ++ G G
Sbjct: 151 RDVRIAGGAETIQQYLDSGLIDEFSITLAPVLFGTG 186


>gi|291301166|ref|YP_003512444.1| bifunctional deaminase-reductase domain-containing protein
           [Stackebrandtia nassauensis DSM 44728]
 gi|290570386|gb|ADD43351.1| bifunctional deaminase-reductase domain protein [Stackebrandtia
           nassauensis DSM 44728]
          Length = 201

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           D+   +  L  R    L V G A +A S + + LVD++ L  +  V+G+G    P  +G 
Sbjct: 109 DVAAQVAELKARPGRELQVHGSAELAQSLLGAGLVDTLRLVIAPCVVGQGRRLFP--DGG 166

Query: 334 LEKNFMCVRRDY 345
                  V +  
Sbjct: 167 AAAGLRPVSQRM 178


>gi|290956214|ref|YP_003487396.1| hypothetical protein SCAB_16991 [Streptomyces scabiei 87.22]
 gi|260645740|emb|CBG68831.1| putative secreted protein [Streptomyces scabiei 87.22]
          Length = 224

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
             L       LLV G   +A + +   L D ++L    +V+G G    P +        +
Sbjct: 145 RELREADGGDLLVLGSPTLARTLLAEGLADELVLIVMPVVLGGGKTIFPGDGAKRTLELV 204

Query: 340 CVRRDYFGSDVCLEYIGK 357
               +  G++VC+  +G 
Sbjct: 205 STTTNGAGANVCVYRVGD 222


>gi|297563204|ref|YP_003682178.1| bifunctional deaminase-reductase domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296847652|gb|ADH69672.1| bifunctional deaminase-reductase domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 180

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 61/178 (34%), Gaps = 35/178 (19%)

Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH 217
           +S D  I   G     I+ +++ + V  + A + A+LVG  T       +  R+      
Sbjct: 17  MSLDGFIAGPGHAMDWISEYLTADAVPEVMAATGAMLVGRRTYE-----VAKRMPDQGTA 71

Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277
                  D   +  L  +  +        +    ++ V        + N           
Sbjct: 72  Y------DGGPQFVLTHEPPEEPDPTVTFLTCGLEEAVATARGAAGDRN----------- 114

Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
            L IL            GA VA   +   LVD I++Y   +++G+G   +P   G ++
Sbjct: 115 -LEIL------------GADVAAQCLRRGLVDEILVYVLPVLLGDGVRFTPPGLGRID 159


>gi|260459843|ref|ZP_05808097.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
           opportunistum WSM2075]
 gi|259034645|gb|EEW35902.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
           opportunistum WSM2075]
          Length = 185

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GGA +A S   + LVD   LY   +V+G G
Sbjct: 123 GGADLAASLSRAGLVDEFRLYMHPVVLGAG 152


>gi|229056422|ref|ZP_04195835.1| Enzyme [Bacillus cereus AH603]
 gi|228720896|gb|EEL72445.1| Enzyme [Bacillus cereus AH603]
          Length = 174

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 2/93 (2%)

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             +     D+ +    L  +  + + + GG ++   F  + L+D  ++  +  ++G  G+
Sbjct: 84  EHVEFVNEDVLEFTKRLKEQEGSKIWMVGGGSLLRGFFKNNLIDEYVVTITPHILG-YGV 142

Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           P   +E   E +        FG  V L Y  K+
Sbjct: 143 P-LFKEKNPEIHLTLTDTKRFGQFVNLYYKVKS 174


>gi|261404711|ref|YP_003240952.1| bifunctional deaminase-reductase domain-containing protein
           [Paenibacillus sp. Y412MC10]
 gi|261281174|gb|ACX63145.1| bifunctional deaminase-reductase domain protein [Paenibacillus sp.
           Y412MC10]
          Length = 183

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 25/44 (56%)

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
             L  + V  L + GG  +A S +  +L+D ++L  + +++G+G
Sbjct: 105 RHLKEQTVGKLWLCGGGELAGSLLQHKLIDQLVLKINPVMVGDG 148


>gi|321254677|ref|XP_003193159.1| hypothetical protein CGB_C9470W [Cryptococcus gattii WM276]
 gi|317459628|gb|ADV21372.1| hypothetical protein CNC00250 [Cryptococcus gattii WM276]
          Length = 1858

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 7/101 (6%)

Query: 39   GIVIGRGVTAYGG--CPHAEVQALEEAGEEARGATAYVTLEPCS-HYGRSPPCAQFIIEC 95
            G ++ RG     G   P  EV  L       + A  Y TLEPCS      P CA  ++  
Sbjct: 1752 GEMLARG---ECGLTTPSKEVIQLPPIEMVLKDAVCYATLEPCSYRTSGGPSCALELVRA 1808

Query: 96   GIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGK 135
            G+R V + V++P   V   G++ L   G+ +V  +   E  
Sbjct: 1809 GVRAVYLGVEEPPDFVECEGVRILQDGGVRVVRAVGLEEDC 1849


>gi|257067545|ref|YP_003153800.1| tRNA-adenosine deaminase [Brachybacterium faecium DSM 4810]
 gi|256558363|gb|ACU84210.1| tRNA-adenosine deaminase [Brachybacterium faecium DSM 4810]
          Length = 162

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 16/102 (15%)

Query: 30  SVACLIVK-DGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPC 79
            +  ++V  DG V+               HAE+ AL  A          G T  VTLEPC
Sbjct: 35  PIGAVVVAPDGAVLATAGNRREADEDPTAHAEILALRRAAAATGRWNLTGCTLVVTLEPC 94

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                   CA  I+   IRRVVV   DP    +G     + +
Sbjct: 95  ------TMCAGAIVLARIRRVVVGAMDPKAGAAGSLYDLVRE 130


>gi|254368626|ref|ZP_04984642.1| predicted protein [Francisella tularensis subsp. holarctica
          FSC022]
 gi|157121529|gb|EDO65720.1| predicted protein [Francisella tularensis subsp. holarctica
          FSC022]
          Length = 64

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 2  PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
            S  D  FM  A + +          P +  ++V+D  +I +      G      HAE+
Sbjct: 3  NYSDQDIFFMQKAYQQALLA-YQAGEVP-IGAVLVRDDQIIVQNFNQTIGLNDPTAHAEI 60

Query: 58 QALE 61
            L 
Sbjct: 61 LVLR 64


>gi|312115805|ref|YP_004013401.1| CMP/dCMP deaminase zinc-binding protein [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311220934|gb|ADP72302.1| CMP/dCMP deaminase zinc-binding protein [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 212

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 39/122 (31%), Gaps = 17/122 (13%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--------YGGCPH 54
            ++ D   M   +  SR        +     LI  DG ++                    
Sbjct: 4   WNAADEAMMLRCIELSREA--TREGDYPFGALIALDGEIVAEAGNRAMRDADFSRHAEII 61

Query: 55  AEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           A   AL+  G      AT Y T+EPC+       C+  I E  + RV   +  P +    
Sbjct: 62  AIAAALKTVGRGGLARATLYSTVEPCAM------CSFCIREAWVGRVAYALASPAMGGVS 115

Query: 114 RG 115
           + 
Sbjct: 116 KW 117


>gi|312197697|ref|YP_004017758.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c]
 gi|311229033|gb|ADP81888.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c]
          Length = 181

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 6/84 (7%)

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
               P  ++T  D      A    +I       R +          G   + V GG  +A
Sbjct: 71  DYRQPTWVMTSRD----LRAISGADIRFARGGIRPVHA--EATAAAGGKDVWVVGGGDLA 124

Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323
             F ++ L+D++I+  + + +G G
Sbjct: 125 GQFADAGLLDAVIVSIAPVTLGAG 148


>gi|110679276|ref|YP_682283.1| cytidine and deoxycytidylate deaminase family protein [Roseobacter
           denitrificans OCh 114]
 gi|109455392|gb|ABG31597.1| cytidine and deoxycytidylate deaminase family protein [Roseobacter
           denitrificans OCh 114]
          Length = 155

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 43/128 (33%), Gaps = 21/128 (16%)

Query: 30  SVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
            V  +IV  DG +I          +    HAE+ A+  A      E       YVTLEPC
Sbjct: 30  PVGAVIVAPDGAIIAAAGNQTRADHDPTAHAEILAIRRACAVLGSERLLDHALYVTLEPC 89

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEG 134
           +        A  I    I R+     DP      +G +            + D +  +E 
Sbjct: 90  AMC------AAAISAARISRLYYGASDPKSGGVAQGARVFSHPQCHHAPEVFDGIAAAES 143

Query: 135 KIFLHAYL 142
           +  L  + 
Sbjct: 144 EAMLRGFF 151


>gi|190890250|ref|YP_001976792.1| dihydrofolate reductase [Rhizobium etli CIAT 652]
 gi|190695529|gb|ACE89614.1| putative dihydrofolate reductase protein [Rhizobium etli CIAT 652]
          Length = 185

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           LT L      ++ + G A +A S + + LVD I +    +++G G 
Sbjct: 106 LTRLKQEEGKTIFIFGSADLADSLLKAGLVDEIRICVVPVILGAGN 151


>gi|148554116|ref|YP_001261698.1| deaminase-reductase domain-containing protein [Sphingomonas
           wittichii RW1]
 gi|148499306|gb|ABQ67560.1| bifunctional deaminase-reductase domain protein [Sphingomonas
           wittichii RW1]
          Length = 186

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 10/93 (10%)

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
               V++VT    P        ++         D+  L+  L       + + GG  +  
Sbjct: 69  GDQRVLVVTSRPIPAPKGPLETRS---------DVDALIAELRSLDDGDVWMLGGGQLQM 119

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           +F+    +D I +Y    +IG GG P     G+
Sbjct: 120 AFLERGALDEIEIYVIPEMIG-GGRPLFPATGF 151


>gi|325676856|ref|ZP_08156529.1| guanine deaminase [Rhodococcus equi ATCC 33707]
 gi|325552404|gb|EGD22093.1| guanine deaminase [Rhodococcus equi ATCC 33707]
          Length = 188

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 50/186 (26%), Gaps = 23/186 (12%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEE 66
           M+ A R +   V      P    +I +DG ++ RG            H E++A+ +A + 
Sbjct: 7   MNEACRLAIESVENNWGGP-FGAVIARDGDIVARGQNRVLLTGDVTAHGEIEAIRKAVQV 65

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
              A   ++ E                E  ++ V      PD       +      G+ +
Sbjct: 66  LNAAAPSISREHVD-------------ESTLKLVPRPEGSPDRVPERARMLM----GMEI 108

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
                         Y +R         L                        S  +V  L
Sbjct: 109 YTCGAPCPMCMSAIYWSRLDAVYFASDLAATSHIGFDDAFQYGDFTRPLAERS-IKVEQL 167

Query: 187 RAQSDA 192
           RA   A
Sbjct: 168 RADLGA 173


>gi|212697211|ref|ZP_03305339.1| hypothetical protein ANHYDRO_01779 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675660|gb|EEB35267.1| hypothetical protein ANHYDRO_01779 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 146

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 30/128 (23%)

Query: 15  LRFSRW-HVGLTSTNPSVACLIVKD-GIVIGRGV---------------TAYGG----CP 53
           ++ +    +  T     V C++V +   +I  G                T   G      
Sbjct: 13  IKLAHMVALRGTCDRAYVGCVLVNNENRIISTGYNGSIKGNPHCDEVGHTMRDGHCIATI 72

Query: 54  HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           HAE+ AL    + G   + +  YVT  PC +      C + +I+ G+R +    D     
Sbjct: 73  HAEMNALLYCAKEGISVKNSICYVTHFPCLN------CTKSLIQAGVREIYYTNDYRVDP 126

Query: 111 VSGRGLQW 118
            +   L+ 
Sbjct: 127 YAIELLEK 134


>gi|148253573|ref|YP_001238158.1| putative cytidine/deoxycytidylate deaminase family protein
           [Bradyrhizobium sp. BTAi1]
 gi|146405746|gb|ABQ34252.1| Putative Cytidine/deoxycytidylate deaminase family protein
           [Bradyrhizobium sp. BTAi1]
          Length = 240

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 18/109 (16%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGR---GVT-AYGGCPHAEVQA 59
           + DA F+  +   +R  +  +  N   A ++V   G V+     G   A     HAE   
Sbjct: 85  ARDAHFLRHSFAVARRSM--SHGNHPFAAVLVDAGGRVLIEAENGYMPARDATAHAERLV 142

Query: 60  LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
             +A           AT Y + EPC+       CA  I   GI RVV  
Sbjct: 143 ATQACTSIAADIRATATLYSSAEPCAM------CAGAIYWAGIGRVVYG 185


>gi|328858134|gb|EGG07248.1| hypothetical protein MELLADRAFT_35707 [Melampsora larici-populina
           98AG31]
          Length = 341

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 48/157 (30%), Gaps = 49/157 (31%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTA-------------- 48
            +D  FM+ A   +            V  +++  +D  V+  G                 
Sbjct: 189 DWDQYFMTLA-NLASLRSNCMKR--RVGAVLITKRDKRVLSTGYNGTPRGMTNCNEGGCA 245

Query: 49  ----------YGGCP-------HAEVQALEEAGEE----ARGATAYVTLEPCSHYGRSPP 87
                       G         HAE  AL EAG +      G+T Y    PC        
Sbjct: 246 RLGTAAEVVSKCGTDLNECLCLHAEENALLEAGRDRMGAGEGSTLYCNTCPCLR------ 299

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           C+  I++CG+R VV         +        ++ G+
Sbjct: 300 CSVKIVQCGVREVVYSFSYS---MDIGTAAVFAEAGV 333


>gi|300024336|ref|YP_003756947.1| bifunctional deaminase-reductase domain protein [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526157|gb|ADJ24626.1| bifunctional deaminase-reductase domain protein [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 176

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 6/86 (6%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             +++ ++  L       + V  G  +A S     L+D   LY   +V+G G   +P   
Sbjct: 95  GDNVEAVIRGLKAERAGEIHV-SGPKLAGSLSELALIDEYRLYFHPVVLGRG---APFFA 150

Query: 332 GYLEKNFMCVRRDYFGSD-VCLEYIG 356
           G           D  G D + L Y+ 
Sbjct: 151 G-PRPRLRLEASDLIGEDAIRLTYVP 175


>gi|302868489|ref|YP_003837126.1| bifunctional deaminase-reductase domain-containing protein
           [Micromonospora aurantiaca ATCC 27029]
 gi|315505135|ref|YP_004084022.1| bifunctional deaminase-reductase domain protein [Micromonospora sp.
           L5]
 gi|302571348|gb|ADL47550.1| bifunctional deaminase-reductase domain protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|315411754|gb|ADU09871.1| bifunctional deaminase-reductase domain protein [Micromonospora sp.
           L5]
          Length = 187

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-L 352
           GGA +A   + + LVD   L+   +V+G G    P     +  +   +    F + V  L
Sbjct: 124 GGANLAAQALEAGLVDECQLFVWPVVVGGGK---PGLPTGMRVDLELLDERRFRNGVVHL 180

Query: 353 EYIG 356
            Y  
Sbjct: 181 RYRP 184


>gi|257080766|ref|ZP_05575127.1| dihydrofolate reductase [Enterococcus faecalis E1Sol]
 gi|256988796|gb|EEU76098.1| dihydrofolate reductase [Enterococcus faecalis E1Sol]
          Length = 180

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 33/85 (38%)

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
           T  L+P +   E+    +  +  + +         D   L+  L       + + GG  V
Sbjct: 61  TQELSPDVYFYEDKHSYIITSHPEPSTTSRTFTKEDPVTLIRRLKEEDGAGIWIVGGPKV 120

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323
               + + L+D+ IL    + +GEG
Sbjct: 121 VQPLLAADLIDTFILTTIPLFLGEG 145


>gi|325107624|ref|YP_004268692.1| bifunctional deaminase-reductase-like protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324967892|gb|ADY58670.1| bifunctional deaminase-reductase-like protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 186

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
             P  I +    P +A      ++  +  D R + + +      G   + + GG  +   
Sbjct: 75  KQPTWIFSSRQLPEVA----GADLRFVQGDVRPVHEQMQA-AAAGKN-IWIIGGGDLVGQ 128

Query: 302 FINSRLVDSIILYRSQIVIGEG 323
           F ++ L++ +I+  + + +G G
Sbjct: 129 FYDAGLLNELIVQVAAVTLGSG 150


>gi|256425642|ref|YP_003126295.1| bifunctional deaminase-reductase domain protein [Chitinophaga
           pinensis DSM 2588]
 gi|256040550|gb|ACU64094.1| bifunctional deaminase-reductase domain protein [Chitinophaga
           pinensis DSM 2588]
          Length = 176

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           + + GGA++  +F+   LVD + L    I++G G
Sbjct: 110 IWLFGGASLTDAFMREGLVDELWLSVHPIILGAG 143


>gi|148244449|ref|YP_001219143.1| deoxycytidylate deaminase [Candidatus Vesicomyosocius okutanii HA]
 gi|146326276|dbj|BAF61419.1| deoxycytidylate deaminase [Candidatus Vesicomyosocius okutanii HA]
          Length = 148

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 30/118 (25%)

Query: 9   RFMSAALRFSRWHVGLTS-TNPSVACLIV-KDGIVIGRGVT----------AYGGC---- 52
           ++    L  ++     +   +  V  + V +   V+ +G                     
Sbjct: 6   KWDKRYLSLAKKVSTWSKDPSTQVGAVTVGRKKEVLSQGFNGFPRGIHDTDERYHDREIK 65

Query: 53  ----PHAEVQALEEA---GEEARGATAYV-TLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                HAE+ A+  A   G     AT YV  L  CS       CA+ II+ GI+RVV+
Sbjct: 66  YKFVVHAEMNAIYNATYSGTSLDRATLYVYGLPICSE------CAKGIIQVGIKRVVI 117


>gi|325000060|ref|ZP_08121172.1| cytosine/adenosine deaminase [Pseudonocardia sp. P1]
          Length = 158

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 26/98 (26%), Gaps = 11/98 (11%)

Query: 3  VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI-GRGVTAYGG---CPHAEVQ 58
          +   D   +   +  +   +G          ++V    V+         G     H E +
Sbjct: 1  MDEQDRVHLRRCVELAEQALGAGDE--PFGSVLVDASGVVRAEDRNRVAGGDPTRHPEFE 58

Query: 59 ALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQF 91
              A E        GAT Y + E C     +      
Sbjct: 59 LARRATELLTPGERAGATVYTSGEHCPMCAAAHAWVGL 96


>gi|260170488|ref|ZP_05756900.1| hypothetical protein BacD2_01338 [Bacteroides sp. D2]
 gi|315918834|ref|ZP_07915074.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692709|gb|EFS29544.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 169

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 65/181 (35%), Gaps = 49/181 (27%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKN--QVHLLRAQSDAILVGIGTVLADDPE 206
            S I   +A+S D  I      +  I G ++K   ++H     S+ +L G  T  A    
Sbjct: 1   MSKIKAHVAISLDGYIAHTDGETNWIPGELAKEISEIHQ---TSEILLAGFNTYEA---- 53

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP----VIIVTENDDPVLALAFRK 262
                                        I +    +       +++ +D   LA     
Sbjct: 54  -----------------------------IFEQCAGSWPYKNTYVISHHDFSALA----N 80

Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
           KN+  ++CD  +    L       + S++  GG  +    +N+ L+D + LY   +++G+
Sbjct: 81  KNLQFLFCDQFEQISTLKKEAAGDI-SVI--GGGNLITFLLNNGLLDELNLYIVPVLLGD 137

Query: 323 G 323
           G
Sbjct: 138 G 138


>gi|193216732|ref|YP_001999974.1| deoxycytidylate deaminase [Mycoplasma arthritidis 158L3-1]
 gi|193002055|gb|ACF07270.1| deoxycytidylate deaminase [Mycoplasma arthritidis 158L3-1]
          Length = 173

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 43/135 (31%), Gaps = 45/135 (33%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGC----------- 52
            +D  FMS A + S   +     +  V   IV     ++  G                  
Sbjct: 10  DWDKYFMSLA-KLS--AMRSKDPSTKVGACIVNTKNYIVSLGYNGMPTSFNNTKINNDTQ 66

Query: 53  --------------------PHAEVQALEEAGEEAR----GATAYVTLEPCSHYGRSPPC 88
                                HAE  A+  A   +     G+T YVT  PC+       C
Sbjct: 67  FPWDRPSNKDDIINSKYTYVVHAEQNAIINANITSSHIEPGSTLYVTHSPCAM------C 120

Query: 89  AQFIIECGIRRVVVC 103
           A+ +++  I++VV  
Sbjct: 121 AKLVVQSKIKKVVYA 135


>gi|298113078|gb|ADI58667.1| hypothetical protein [Streptomyces nodosus subsp. asukaensis]
          Length = 192

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           GGA +  +F+   LVD   +Y   ++IG G       +  +           FGS V L
Sbjct: 124 GGADLGATFMRLDLVDEYRIYVHPVLIGRG--KPLFPDSAVRTGLRLAETREFGSGVVL 180


>gi|315504399|ref|YP_004083286.1| bifunctional deaminase-reductase domain protein [Micromonospora sp.
           L5]
 gi|315411018|gb|ADU09135.1| bifunctional deaminase-reductase domain protein [Micromonospora sp.
           L5]
          Length = 191

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           D   L+  L  R    + + GG  +A   ++   +D +++  + +V+G G     ++ G+
Sbjct: 110 DPAALVRELKTRPGRDIWLCGGGQLAGQLLDE--IDELVVKLNPVVVGSGIK--LVDSGF 165

Query: 334 LEKNFMCVRRDYFGSDVCL 352
             +         F + V +
Sbjct: 166 DPRRLTLTSARPFDAGVVV 184


>gi|58583602|ref|YP_202618.1| cytosine deaminase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625409|ref|YP_452781.1| cytosine deaminase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188575147|ref|YP_001912076.1| cytosine deaminase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58428196|gb|AAW77233.1| cytosine deaminase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369349|dbj|BAE70507.1| cytosine deaminase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188519599|gb|ACD57544.1| cytosine deaminase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 151

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 51/143 (35%), Gaps = 19/143 (13%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR 68
           A+  +R   GL      +   +   DG ++G G            H E  A  +AG + R
Sbjct: 14  AIIEAR--QGLAEGGIPIGAALYHNDGRLLGCGHNRRVQENDPSVHGETDAFRKAGRQRR 71

Query: 69  --GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
                   TL PC +      C+  + +  I  VVV     +      G+ WL + G+ V
Sbjct: 72  YKDTIMVTTLAPCWY------CSGLVRQFNIGTVVVG----ESLTFQGGIAWLREHGVNV 121

Query: 127 DRMMESEGKIFLHAYLTRQVEKR 149
             +   E    L  Y++   +  
Sbjct: 122 IDLQSQECIDLLGGYISANPDVW 144


>gi|319782007|ref|YP_004141483.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317167895|gb|ADV11433.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 216

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D+   L  L       LL++G   +  + + + L+D I L    +++G G       +
Sbjct: 107 GPDIVAELRRLKQEDGPDLLIQGSGNLIQTLLANGLIDEIRLMVFPLLLGNG--KRLFGD 164

Query: 332 GYLEKNFMCVRRDYFGSDVCL 352
             +   F  ++    G+ V +
Sbjct: 165 SAIPAAFKLIKSQATGTGVIM 185


>gi|56757936|gb|AAW27108.1| SJCHGC09107 protein [Schistosoma japonicum]
          Length = 165

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 37/121 (30%), Gaps = 20/121 (16%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEE 66
           M  A   ++  +   +  P V C  V  G VI  G            HAE+  +    + 
Sbjct: 1   MDVAFELAQEAL-KCNEVP-VGCAFVYKGEVIASGRNEVNATRDATQHAEMITIRHLEQW 58

Query: 67  AR-----------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            R               YVT+EPC          +F +   ++ +     +      G  
Sbjct: 59  CRKNEIEFDKVLTECDLYVTVEPCIMC---TAAIRFCLPAHLKSITYGARNERFGGCGSV 115

Query: 116 L 116
           L
Sbjct: 116 L 116


>gi|190889961|ref|YP_001976503.1| riboflavin biosynthesis reductase [Rhizobium etli CIAT 652]
 gi|190695240|gb|ACE89325.1| putative riboflavin biosynthesis reductase protein [Rhizobium etli
           CIAT 652]
          Length = 176

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 8/85 (9%)

Query: 274 DLKKLLTILVGRGVTSLLVEG-GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
           DL+  +  L   G   +  E  G  +A S  +  L+D  I+Y   +V+G G    P   G
Sbjct: 97  DLESAIRKLKAEGHGEI--EAAGPDLARSLTDLGLIDEYIIYLHPVVLGHGK---PYFTG 151

Query: 333 YLEKNFMCVRRDYFGSDVC-LEYIG 356
                   +  D    +V  L Y+ 
Sbjct: 152 -PRPPLRLIANDRIDENVIRLVYVP 175


>gi|163839843|ref|YP_001624248.1| hypothetical protein RSal33209_1096 [Renibacterium salmoninarum
           ATCC 33209]
 gi|162953319|gb|ABY22834.1| conserved hypothetical protein [Renibacterium salmoninarum ATCC
           33209]
          Length = 201

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 73/207 (35%), Gaps = 32/207 (15%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGF--ISKNQVHLLRAQSDAILVGIG---TVL 201
            +   + L +  S D  +        P  G+   +++ V+ L A  +A + G G   TV+
Sbjct: 1   MRMGKLILTMHTSADGFVATGDGKMWPTFGWPAEAQSLVNELYADVEAAIYGRGIYQTVI 60

Query: 202 ADDPELT-CRLNGLQEHSPMRIILDPHFKLSLD-SKIIKTALLAPVIIVTENDDPVLALA 259
              P  T   +NG+   +P+        +  LD ++++       V    E  +P     
Sbjct: 61  ---PFWTDVAINGVPHGAPL-------GEFDLDFARLLLPVRKYVVSRTYEPQEPDTTAI 110

Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
                  +          +           +L+  G A+    + ++L+D I+L    ++
Sbjct: 111 RANIATEVERIKAGTSGAV-----------VLL-AGGAITAELLKAKLIDEILLLTGPVL 158

Query: 320 IGEGGIPSPLEEGYLEKNFMCVRRDYF 346
           +G G    PL +         +  D F
Sbjct: 159 LGSGR---PLADLSEPIPLSLLSVDTF 182


>gi|23012876|ref|ZP_00052863.1| COG2131: Deoxycytidylate deaminase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 140

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 46/126 (36%), Gaps = 35/126 (27%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPS--VACLIV-KDGIVIGRGVTAYGGCP---- 53
           M ++ +D  FM  A      H    S +PS  V  + V  DG +   G            
Sbjct: 1   MSMNWYD-YFMGFA-----RHAASKSKDPSTQVGAVAVGPDGEIRATGYNGLPRGVEDKP 54

Query: 54  -------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                        HAE   +  A   G   +G T YVT  PCS       CA+ +I+ G+
Sbjct: 55  ERMERPAKYLWTSHAEENLVAHAARVGVSLKGCTVYVTHYPCSR------CARSLIQAGV 108

Query: 98  RRVVVC 103
            ++ V 
Sbjct: 109 AKINVG 114


>gi|209524445|ref|ZP_03272994.1| CMP/dCMP deaminase zinc-binding [Arthrospira maxima CS-328]
 gi|209495236|gb|EDZ95542.1| CMP/dCMP deaminase zinc-binding [Arthrospira maxima CS-328]
          Length = 195

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 44/128 (34%), Gaps = 39/128 (30%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCPHAEVQ----- 58
           ++D  F+  A + +      T     V  +IVKD  ++  G      G  H   Q     
Sbjct: 27  TWDEYFLMFA-KLA--ATRSTCLAFPVGAVIVKDRQILATGYNGSPSGSVHCTTQGFCYP 83

Query: 59  --------------ALE----------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                         A+           + G    GA+ YVTLEPC +      C + II 
Sbjct: 84  GLSSCDASQTLPSRAVHAEANAIAQAAKHGICCAGASIYVTLEPCIY------CLKLIIS 137

Query: 95  CGIRRVVV 102
            GI+ V  
Sbjct: 138 TGIKEVYY 145


>gi|297192158|ref|ZP_06909556.1| dihydrofolate reductase [Streptomyces pristinaespiralis ATCC 25486]
 gi|197720197|gb|EDY64105.1| dihydrofolate reductase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 193

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 74/211 (35%), Gaps = 22/211 (10%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
              ++  IA S D  IG  G  +   T  ++ + +  L+ +         T+    P   
Sbjct: 1   MRKLSYFIAASIDGFIGAPGGEADFFTDLVADDYLEYLKEEC------ADTL----PTPA 50

Query: 209 CRLNGLQEHSPMRIILDP--HFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
            R  G+ +    R   D     + S D   +K  L +P   + E             N+ 
Sbjct: 51  RRAFGIDDVPNSR--YDTLIQGRASYDLA-LKVGLTSPYAHLREFVVSNSLQESPDPNVR 107

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           I+     D+   +  L       + + GGA VA   I+   VD +++    +V+G  G+P
Sbjct: 108 IL---SGDVAAAVRDLKKEEGLDIYLCGGANVAGQLIDE--VDELVIKSYPVVLGS-GMP 161

Query: 327 SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
                  L   F       FG+ V +    +
Sbjct: 162 MFATPFRLSA-FSLDSVRAFGNGVVVRQYSR 191


>gi|300789274|ref|YP_003769565.1| deaminase-reductase domain-containing protein [Amycolatopsis
           mediterranei U32]
 gi|299798788|gb|ADJ49163.1| deaminase-reductase domain-containing protein [Amycolatopsis
           mediterranei U32]
          Length = 241

 Score = 44.5 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            APV +VT     VL          +     R ++       G+ V    V GG  +   
Sbjct: 102 RAPVFVVTHRPREVLERQGGTSFTFVTEGPERAVELARAAAGGKDVA---VAGGGELLRQ 158

Query: 302 FINSRLVDSIILYRSQIVIGEG 323
            + + L+D + L+ + +++GEG
Sbjct: 159 VLAAGLLDQLELHIAPVLLGEG 180


>gi|226305500|ref|YP_002765460.1| hypothetical protein RER_20130 [Rhodococcus erythropolis PR4]
 gi|226184617|dbj|BAH32721.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 190

 Score = 44.5 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 284 GRGVT-SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
              +   +LV G   + H+ + + LVD + L    +++G GG   P     ++      R
Sbjct: 115 KEQIDGEILVAGSRTLVHALLLAGLVDELRLMVFPVILGSGGRVFPESADKIDLELKDDR 174

Query: 343 RDYFGSDVCL 352
           R   G  V  
Sbjct: 175 RYESGVQVLT 184


>gi|111023875|ref|YP_706847.1| hypothetical protein RHA1_ro06923 [Rhodococcus jostii RHA1]
 gi|110823405|gb|ABG98689.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 134

 Score = 44.5 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 47/114 (41%), Gaps = 6/114 (5%)

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           ++ + + D  L      + + +   D  +L   L  L  +   ++ + GG++ A S +  
Sbjct: 11  LVFSRSGDHPLTEWAGTEQVVVATDD--ELVTYLEDLKRQPGKNIHLSGGSSFARSVLAL 68

Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-LEYIGKN 358
            LVD   L+   +V    G  S   E   ++    V  + +G+ V  + Y+ + 
Sbjct: 69  GLVDEFYLFVYPVV--SPGA-SWFSEISDQRGLELVGTESYGNGVVEVHYVPRE 119


>gi|116511986|ref|YP_809202.1| deoxycytidylate deaminase [Lactococcus lactis subsp. cremoris SK11]
 gi|125624228|ref|YP_001032711.1| hypothetical protein llmg_1416 [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|116107640|gb|ABJ72780.1| Deoxycytidylate deaminase [Lactococcus lactis subsp. cremoris SK11]
 gi|124493036|emb|CAL97999.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300071008|gb|ADJ60408.1| hypothetical protein LLNZ_07300 [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 146

 Score = 44.5 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 30/101 (29%)

Query: 31  VACLIVK-DGIVIGRGVTA----------------YGG----CPHAEVQALEEA---GEE 66
           V  L+V  +G ++  G                     G      HAE  A+ +A   G  
Sbjct: 32  VGALLVSPNGQLLSTGYNGAVSGMPHCTDIGCTEDKYGHCVATVHAEQNAIAQAAKHGVS 91

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
             GA  Y TL PC        C + ++  G++ +    +  
Sbjct: 92  PEGAILYTTLFPCL------ACLKLVVAAGVKEIKYIDEYH 126


>gi|322377812|ref|ZP_08052301.1| hypothetical protein HMPREF0851_01608 [Streptococcus sp. M334]
 gi|321281235|gb|EFX58246.1| hypothetical protein HMPREF0851_01608 [Streptococcus sp. M334]
          Length = 173

 Score = 44.5 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           + V GG ++    +++ L D +I+  + +++G  G+P   +E   ++ +       FG  
Sbjct: 105 VFVIGGNSLVGPLLDADLFDHLIIQIAPLILG-KGVPLFTQEEG-QRCYQLDSLRQFGPF 162

Query: 350 VCLEYIGKN 358
             L +  K+
Sbjct: 163 AELVFSRKS 171


>gi|167616050|ref|ZP_02384685.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
           Bt4]
          Length = 156

 Score = 44.5 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 6/96 (6%)

Query: 251 NDDPVLALAFRKKNINIIYCD-CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
             D   A      +  +   D C  L      L  +GV  L VE   A+  +   + L D
Sbjct: 31  RADRADARPAGAPSAPVADTDACLPLPDAFARLAKQGVNELFVEADLALCDALFGADLAD 90

Query: 310 SIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
            ++LY            +P+   +L      V R +
Sbjct: 91  ELLLYAHP-----ASRDAPVSASWLAAAIDDVARRW 121


>gi|325291364|ref|YP_004267545.1| CMP/dCMP deaminase zinc-binding protein [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324966765|gb|ADY57544.1| CMP/dCMP deaminase zinc-binding protein [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 148

 Score = 44.5 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 43/138 (31%), Gaps = 44/138 (31%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
           P  S+D  F+  A   SR    L     +   +IVKD I++  G                
Sbjct: 4   PRPSWDEYFLELAGLISRRSTCLRR---NYGAVIVKDNIIVSTGYNGAARGEDNCIDIKK 60

Query: 54  --------------------HAEVQALEEAGE--EARGATAYVTLEPCSHYGRSPP---- 87
                               HAE  A+  AG+  + +  T YV      H    P     
Sbjct: 61  CTREERNIPPGERYELCVAVHAEQNAII-AGDPVKMQNGTIYVA---GYHGNGEPAPSEP 116

Query: 88  ---CAQFIIECGIRRVVV 102
              C + I    I+RVV 
Sbjct: 117 CLLCRRMIKNAMIKRVVF 134


>gi|307703172|ref|ZP_07640118.1| hypothetical protein SMSK23_1005 [Streptococcus oralis ATCC 35037]
 gi|307623247|gb|EFO02238.1| hypothetical protein SMSK23_1005 [Streptococcus oralis ATCC 35037]
          Length = 173

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 285 RGVT---SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF-MC 340
           R +    ++ V GG ++    +++ L D +I+  + +++G+G    PL      + F   
Sbjct: 97  RQIDKGKNVFVIGGNSLVGPLLDADLFDHLIIQIAPLILGKG---VPLFTQEEGQRFYQL 153

Query: 341 VRRDYFGSDVCLEYIGKN 358
                FG    L +  K+
Sbjct: 154 DSLRQFGPFAELVFSRKS 171


>gi|293364919|ref|ZP_06611636.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
 gi|291316369|gb|EFE56805.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
          Length = 163

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 285 RGVT---SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF-MC 340
           R +    ++ V GG ++    +++ L D +I+  + +++G+G    PL      + F   
Sbjct: 87  RQIDKGKNVFVIGGNSLVGPLLDADLFDHLIIQIAPLILGKG---VPLFTQEEGQRFYQL 143

Query: 341 VRRDYFGSDVCLEYIGKN 358
                FG    L +  K+
Sbjct: 144 DSLRQFGPFAELVFSRKS 161


>gi|256080810|ref|XP_002576669.1| cytidine/deoxycytidylate deaminase-related [Schistosoma mansoni]
 gi|238661948|emb|CAZ32906.1| cytidine/deoxycytidylate deaminase-related [Schistosoma mansoni]
          Length = 165

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 37/121 (30%), Gaps = 20/121 (16%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEE 66
           M  A   +   +   +  P V C  V +G VI  G            HAE+  +    + 
Sbjct: 1   MDIAFELACEAL-RCNEVP-VGCAFVYNGEVIASGRNEVNATRDATQHAEMVTIRRLEQW 58

Query: 67  ARG-----------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            R               +VT+EPC          +F +   ++ +     +      G  
Sbjct: 59  CRNNQKELDKILVECDLFVTVEPCIMCA---AAIRFCLPAHLKSITYGARNERFGGCGSV 115

Query: 116 L 116
           L
Sbjct: 116 L 116


>gi|148270280|ref|YP_001244740.1| dihydrofolate reductase-like protein [Thermotoga petrophila RKU-1]
 gi|281412586|ref|YP_003346665.1| dihydrofolate reductase region [Thermotoga naphthophila RKU-10]
 gi|147735824|gb|ABQ47164.1| Dihydrofolate reductase-like protein [Thermotoga petrophila RKU-1]
 gi|281373689|gb|ADA67251.1| dihydrofolate reductase region [Thermotoga naphthophila RKU-10]
          Length = 169

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 2/90 (2%)

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
           VL    R  N   +         ++  L G+G   + V GG  V   F+  +LVD + + 
Sbjct: 63  VLTRRRRSSNDPSLVFFNGSPGDVVKFLEGKGYEKVAVIGGKTVFTEFLREKLVDELFVT 122

Query: 315 RSQIVIGEGGIPSPLE-EGYLEKNFMCVRR 343
               V G  GIP   E EGY     + +RR
Sbjct: 123 VEPYVFG-KGIPFFDEFEGYFPLKLLEMRR 151


>gi|190890543|ref|YP_001977085.1| cytosine deaminase [Rhizobium etli CIAT 652]
 gi|190695822|gb|ACE89907.1| cytosine deaminase protein [Rhizobium etli CIAT 652]
          Length = 145

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 16/101 (15%)

Query: 52  CPHAEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
             HAE+ A+  A      E   GA  YVTLEPC        CA  I    IRR+    +D
Sbjct: 44  TAHAEIAAIRLACEALGQERLAGADLYVTLEPC------TMCAAAISFARIRRLYYGAED 97

Query: 107 PDVRVSGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142
           P       G+++           +     E +    L  + 
Sbjct: 98  PKGGAVDNGVRFYTQPTCHHAPEVYSGFNEVQSAEILRTFF 138


>gi|291301048|ref|YP_003512326.1| bifunctional deaminase-reductase domain-containing protein
           [Stackebrandtia nassauensis DSM 44728]
 gi|290570268|gb|ADD43233.1| bifunctional deaminase-reductase domain protein [Stackebrandtia
           nassauensis DSM 44728]
          Length = 197

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GGAA+   FI + L+D I L+ + ++ G+G
Sbjct: 131 GGAALGRQFIEAGLLDEISLHVAPVLFGDG 160


>gi|218531388|ref|YP_002422204.1| CMP/dCMP deaminase zinc-binding [Methylobacterium
          chloromethanicum CM4]
 gi|218523691|gb|ACK84276.1| CMP/dCMP deaminase zinc-binding [Methylobacterium
          chloromethanicum CM4]
          Length = 153

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 21/103 (20%)

Query: 8  ARFMSAA--LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALE 61
            ++  A  +  +    G          +IV+DG V+ R             HAE+ A+ 
Sbjct: 5  ESYLREATEIALANVAEGGR----PYGAVIVRDGEVVVRAANRIHATNDPSDHAEMVAIR 60

Query: 62 EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
           A +     +      Y +  PC      P C   +   G+++
Sbjct: 61 AASQQLGRPKLDDCIVYASGRPC------PMCHAAMRLAGVKQ 97


>gi|332365579|gb|EGJ43339.1| putative dihydrofolate reductase [Streptococcus sanguinis SK1059]
          Length = 173

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF-MCVRRDYFGS 348
           + V GG ++    +++ L D +I+  + +++G+G    PL      + F        FG 
Sbjct: 105 VFVIGGNSLVGPLLDADLFDHLIIQIAPLILGKG---VPLFTQEEGQRFYQLDSLRQFGP 161

Query: 349 DVCLEYIGKN 358
              L +  K+
Sbjct: 162 FAELVFSRKS 171


>gi|330842863|ref|XP_003293388.1| hypothetical protein DICPUDRAFT_58458 [Dictyostelium purpureum]
 gi|325076278|gb|EGC30077.1| hypothetical protein DICPUDRAFT_58458 [Dictyostelium purpureum]
          Length = 221

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 24/128 (18%)

Query: 3   VSSFD----ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV-TAYGGCPHAE 56
           +S+ D     ++M  A++ +  +      N   A  IV K+G V+  GV T      H E
Sbjct: 41  LSAADKVFHEKYMRIAIQVAIDN------NAKFAAAIVHKNGTVMCTGVNTGRARIYHGE 94

Query: 57  VQAL----EEAGEEA-RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           ++A+    +  G++       Y T EPC        C+  I+     + +      ++  
Sbjct: 95  IEAIVNCTQMYGKKTWEDHYLYTTGEPC------VMCSGAIMWSKFDKTIFASYVNNMYC 148

Query: 112 SGRGLQWL 119
             R    L
Sbjct: 149 -ERCFNQL 155


>gi|322374783|ref|ZP_08049297.1| hypothetical protein HMPREF0849_00499 [Streptococcus sp. C300]
 gi|321280283|gb|EFX57322.1| hypothetical protein HMPREF0849_00499 [Streptococcus sp. C300]
          Length = 173

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF-MCVRRDYFGS 348
           + V GG ++    +++ L D +I+  + +++G+G    PL      + F        FG 
Sbjct: 105 VFVIGGNSLVGPLLDADLFDHLIIQIAPLILGKG---VPLFTQEEGQRFYQLDSLRQFGP 161

Query: 349 DVCLEYIGKN 358
              L +  K+
Sbjct: 162 FAELVFSRKS 171


>gi|306829039|ref|ZP_07462230.1| possible dihydrofolate reductase [Streptococcus mitis ATCC 6249]
 gi|315612688|ref|ZP_07887600.1| possible dihydrofolate reductase [Streptococcus sanguinis ATCC
           49296]
 gi|304428844|gb|EFM31933.1| possible dihydrofolate reductase [Streptococcus mitis ATCC 6249]
 gi|315315275|gb|EFU63315.1| possible dihydrofolate reductase [Streptococcus sanguinis ATCC
           49296]
          Length = 173

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF-MCVRRDYFGS 348
           + V GG ++    +++ L D +I+  + +++G+G    PL      + F        FG 
Sbjct: 105 VFVIGGNSLVGPLLDADLFDHLIIQIAPLILGKG---VPLFTQEEGQRFYQLDSLRQFGP 161

Query: 349 DVCLEYIGKN 358
              L +  K+
Sbjct: 162 FAELVFSRKS 171


>gi|298248300|ref|ZP_06972105.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
           racemifer DSM 44963]
 gi|297550959|gb|EFH84825.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
           racemifer DSM 44963]
          Length = 198

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           +L+ G   + +  +   LVD I L    IV+GE G+P  + +       M VRR     +
Sbjct: 128 ILITGSRTLWNDLLAHDLVDEIHLMIGNIVLGE-GVPVFVGKPDASLRLMEVRRWEDSDN 186

Query: 350 VCLEY 354
           + + Y
Sbjct: 187 ILVRY 191


>gi|262281988|ref|ZP_06059757.1| reductase [Streptococcus sp. 2_1_36FAA]
 gi|262262442|gb|EEY81139.1| reductase [Streptococcus sp. 2_1_36FAA]
          Length = 173

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF-MCVRRDYFGS 348
           + V GG ++    +++ L D +I+  + +++G+G    PL      + F        FG 
Sbjct: 105 VFVIGGNSLVGPLLDADLFDHLIIQIAPLILGKG---VPLFTQEEGQRFYQLDSLRQFGP 161

Query: 349 DVCLEYIGKN 358
              L +  K+
Sbjct: 162 FAELVFSRKS 171


>gi|160942024|ref|ZP_02089339.1| hypothetical protein CLOBOL_06910 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434915|gb|EDP12682.1| hypothetical protein CLOBOL_06910 [Clostridium bolteae ATCC
           BAA-613]
          Length = 335

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 59/190 (31%), Gaps = 46/190 (24%)

Query: 186 LRAQSDAILVGIGTVLADDPELTC-----------RLNGLQEHSPMRIILDPHF-KLSLD 233
           LRA +D I++G  T+L++ P +TC           R    +++ P  +I+      +  D
Sbjct: 105 LRAYADGIIIGARTLLSE-PGITCHVYEERLTRQRREVLGKKYQPCGVIVSLDGTDIPFD 163

Query: 234 SKIIKTALLA--PVIIVTENDDPVLALAFRKKNINII----------------------- 268
             I          ++I T        +A       +I                       
Sbjct: 164 HYIFDVDPKEEYKLVIATSPRGAEYIMANSPLKHPVIGPFKTIEDVDHADLGELYTDFNA 223

Query: 269 -------YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
                    +  D K L+  L   G+  L +E   +     +   ++D   +  S +  G
Sbjct: 224 FPVIVTGQGENPDTKVLMYALKKWGLEKLCIEA-PSYCTHLLQQGMLDEYFINYSMVFAG 282

Query: 322 EGGIPSPLEE 331
               P    E
Sbjct: 283 GQKSPGYASE 292


>gi|125718834|ref|YP_001035967.1| reductase [Streptococcus sanguinis SK36]
 gi|319946261|ref|ZP_08020501.1| dihydrofolate reductase [Streptococcus australis ATCC 700641]
 gi|323350503|ref|ZP_08086165.1| dihydrofolate reductase [Streptococcus sanguinis VMC66]
 gi|125498751|gb|ABN45417.1| Reductase, putative [Streptococcus sanguinis SK36]
 gi|319747643|gb|EFV99896.1| dihydrofolate reductase [Streptococcus australis ATCC 700641]
 gi|322123185|gb|EFX94870.1| dihydrofolate reductase [Streptococcus sanguinis VMC66]
 gi|324989718|gb|EGC21661.1| dihydrofolate reductase [Streptococcus sanguinis SK353]
 gi|324992447|gb|EGC24368.1| dihydrofolate reductase [Streptococcus sanguinis SK405]
 gi|324996025|gb|EGC27936.1| putative dihydrofolate reductase [Streptococcus sanguinis SK678]
 gi|325686899|gb|EGD28924.1| putative dihydrofolate reductase [Streptococcus sanguinis SK72]
 gi|325689002|gb|EGD31010.1| dihydrofolate reductase [Streptococcus sanguinis SK115]
 gi|325695525|gb|EGD37425.1| putative dihydrofolate reductase [Streptococcus sanguinis SK150]
 gi|325697465|gb|EGD39351.1| dihydrofolate reductase [Streptococcus sanguinis SK160]
 gi|327460678|gb|EGF07013.1| dihydrofolate reductase [Streptococcus sanguinis SK1]
 gi|327462790|gb|EGF09112.1| putative dihydrofolate reductase [Streptococcus sanguinis SK1057]
 gi|327468353|gb|EGF13838.1| dihydrofolate reductase [Streptococcus sanguinis SK330]
 gi|327472400|gb|EGF17831.1| putative dihydrofolate reductase [Streptococcus sanguinis SK408]
 gi|327488753|gb|EGF20552.1| putative dihydrofolate reductase [Streptococcus sanguinis SK1058]
 gi|328944849|gb|EGG39009.1| dihydrofolate reductase [Streptococcus sanguinis SK1087]
 gi|332359271|gb|EGJ37092.1| putative dihydrofolate reductase [Streptococcus sanguinis SK49]
 gi|332365784|gb|EGJ43541.1| dihydrofolate reductase [Streptococcus sanguinis SK355]
          Length = 173

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF-MCVRRDYFGS 348
           + V GG ++    +++ L D +I+  + +++G+G    PL      + F        FG 
Sbjct: 105 VFVIGGNSLVGPLLDADLFDHLIIQIAPLILGKG---VPLFTQEEGQRFYQLDSLRQFGP 161

Query: 349 DVCLEYIGKN 358
              L +  K+
Sbjct: 162 FAELVFSRKS 171


>gi|114800381|ref|YP_760090.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Hyphomonas neptunium ATCC 15444]
 gi|114740555|gb|ABI78680.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Hyphomonas neptunium ATCC 15444]
          Length = 176

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-LE 353
           G  +AHS     L+D   +Y   +V+G+G   +P   G           D  G +V  L 
Sbjct: 117 GPQLAHSLTERGLIDEYRIYLHPVVLGQG---TPYFAG-PRPRLRLTATDRIGPEVIRLT 172

Query: 354 YIG 356
           Y+ 
Sbjct: 173 YVP 175


>gi|321313272|ref|YP_004205559.1| putative oxidoreductase [Bacillus subtilis BSn5]
 gi|320019546|gb|ADV94532.1| putative oxidoreductase [Bacillus subtilis BSn5]
          Length = 210

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 10/105 (9%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
              + T + D     +++ +++  I    R     L     +G   + + GGA + + F+
Sbjct: 71  TCYVFTGSPD-----SYQDEHVTFINEGARAFTARLKQ--EKGSN-IWIAGGAELVNDFM 122

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
               +D  I+    +V+G  GIP    E   E          FG 
Sbjct: 123 KEDAIDEFIITVIPVVLGS-GIP-LFHELTNETKLRLKGTKQFGQ 165


>gi|163737476|ref|ZP_02144893.1| CMP/dCMP deaminase, zinc-binding protein [Phaeobacter gallaeciensis
           BS107]
 gi|161389002|gb|EDQ13354.1| CMP/dCMP deaminase, zinc-binding protein [Phaeobacter gallaeciensis
           BS107]
          Length = 147

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 35/102 (34%), Gaps = 16/102 (15%)

Query: 30  SVACL-IVKDGIVIGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
            V  + I  DG +  R             HAEV  + EA      E   G   YVTLEPC
Sbjct: 18  PVGAVLIAPDGQIAARAGNRTRELSDPTAHAEVLVIREACAVAGSERLNGHDLYVTLEPC 77

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +       CA  I    IRRV     DP       G    S 
Sbjct: 78  AM------CAAAIAAARIRRVYYGASDPKSGGVAHGACVFSH 113


>gi|119718062|ref|YP_925027.1| bifunctional deaminase-reductase-like protein [Nocardioides sp.
           JS614]
 gi|119538723|gb|ABL83340.1| bifunctional deaminase-reductase-like protein [Nocardioides sp.
           JS614]
          Length = 185

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 11/102 (10%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P  + T  D P       +  I     D R +   +          + + GG  +   F 
Sbjct: 72  PSWVFTHRDFPA------QDAITFTTDDVRTVHAAMVEAAAGK--DVWLMGGGDLVGQFA 123

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
           +  L+D + +  + + +G G   +PL   ++E       R+ 
Sbjct: 124 DVGLLDEVWVQYAPVTLGGG---APLLPRHVELRLEEHARNR 162


>gi|308177537|ref|YP_003916943.1| RibD domain-containing protein [Arthrobacter arilaitensis Re117]
 gi|307745000|emb|CBT75972.1| RibD domain-containing protein [Arthrobacter arilaitensis Re117]
          Length = 186

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 39/115 (33%), Gaps = 8/115 (6%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
              + T  D P+          ++   +    K L  I    G+ ++ V GG  +   F+
Sbjct: 78  TTYVFTSRDLPI------PDGADVRLVNGPVAKFLPEIRGTAGLKNIWVLGGGELLGQFL 131

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           ++  +D + L  + + +  G     L      +    V+    G    L Y   +
Sbjct: 132 DAGAIDILALTIAPVALARG--TELLPRNIGSERLELVQAHKAGPFARLVYRVHD 184


>gi|298248631|ref|ZP_06972436.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
           racemifer DSM 44963]
 gi|297551290|gb|EFH85156.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
           racemifer DSM 44963]
          Length = 199

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 6/106 (5%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                APV ++++N    +A+        I       L +   +   R +    + GGA 
Sbjct: 84  NPPYHAPVFVLSQNRRDPIAMEGSTTFFFIADGIEAALSRAKEVAGERPIA---IAGGAN 140

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
             + ++++ L+D + L+   + IG G     L EG  + +   V  
Sbjct: 141 TINQYLSAGLIDELWLHIVPVTIGSGAR---LFEGVPDLDLEPVEI 183


>gi|218663750|ref|ZP_03519680.1| putative riboflavin biosynthesis reductase protein [Rhizobium etli
           IE4771]
          Length = 162

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           DL+  +  L   G   + V  G  +A S  +  L+D  ++Y   +V+G G    P   G 
Sbjct: 83  DLESAIRKLKAEGDGEIEV-AGPDLARSLTDLGLIDEYVIYLHPVVLGHGK---PYFAG- 137

Query: 334 LEKNFMCVRRDYFGSDVC-LEYIGK 357
                  V  D    +V  L Y+  
Sbjct: 138 PRPPLRLVANDRIDKNVIRLVYVPD 162


>gi|186685435|ref|YP_001868631.1| deaminase-reductase domain-containing protein [Nostoc punctiforme
           PCC 73102]
 gi|186467887|gb|ACC83688.1| bifunctional deaminase-reductase domain protein [Nostoc punctiforme
           PCC 73102]
          Length = 177

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 25/48 (52%)

Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           K  L  +  +G  ++ + GG A+ +SF+   L+D  I+     ++G G
Sbjct: 94  KNALANIEAQGFENIWLVGGGALINSFLQHSLIDEYIISTIPTILGSG 141


>gi|331266880|ref|YP_004326510.1| dihydrofolate reductase family protein [Streptococcus oralis Uo5]
 gi|326683552|emb|CBZ01170.1| dihydrofolate reductase family protein [Streptococcus oralis Uo5]
          Length = 173

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF-MCVRRDYFGS 348
           + V GG ++    +++ L D +I+  + +++G+G    PL      + F        FG 
Sbjct: 105 VFVIGGNSLVGPLLDADLFDHLIIQIAPLILGKG---VPLFTQEEGQRFYQLDSLRQFGP 161


>gi|257080390|ref|ZP_05574751.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|256988420|gb|EEU75722.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
          Length = 158

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 17/117 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
           M +   D RF+  A+  +         N     ++VKD  ++               HAE
Sbjct: 1   MDLKKQDERFIMQAISLAEASKNQ--GNEPFGAILVKDNTIVFTNENQIHIKSDPTFHAE 58

Query: 57  VQALEE-----AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
              + E        +    T Y + EPC        C+  I+   + R+V      D
Sbjct: 59  HGLIREFCQKYKITDLSEYTLYSSCEPCFM------CSGAIVWSKLGRLVFSAYAKD 109


>gi|311281726|ref|YP_003943957.1| bifunctional deaminase-reductase domain-containing protein
           [Enterobacter cloacae SCF1]
 gi|308750921|gb|ADO50673.1| bifunctional deaminase-reductase domain protein [Enterobacter
           cloacae SCF1]
          Length = 186

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           PV+++++           K  +  I        + +  L  + +  + ++GG  V  SF+
Sbjct: 69  PVLVLSKQLAGTPVPDALKDKVQFIDSA---PGETIARLAEQNIQRVYLDGG-QVVQSFL 124

Query: 304 NSRLV-DSIILYRSQIVIGEG 323
              L+ D +I     ++IG G
Sbjct: 125 REGLITDMVITTV-PVLIGSG 144


>gi|302498222|ref|XP_003011109.1| hypothetical protein ARB_02631 [Arthroderma benhamiae CBS 112371]
 gi|291174657|gb|EFE30469.1| hypothetical protein ARB_02631 [Arthroderma benhamiae CBS 112371]
          Length = 251

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 3/46 (6%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG 50
           ++D  FM  A   +            V C+IVKD  V+  G     
Sbjct: 189 AWDQYFMQLA-SLAAQRSNCMKR--RVGCVIVKDNRVMSTGYNGTP 231


>gi|256826363|ref|YP_003150323.1| tRNA-adenosine deaminase [Kytococcus sedentarius DSM 20547]
 gi|256689756|gb|ACV07558.1| tRNA-adenosine deaminase [Kytococcus sedentarius DSM 20547]
          Length = 159

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 48/160 (30%), Gaps = 31/160 (19%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQAL 60
           P  +    ++  ALR       L + +  V  +++   G VIGRG         AE   L
Sbjct: 7   PDRATQEAWIGHALRAGEQA--LAAGDVPVGAVVIGPGGQVIGRGWNRR----EAEGDPL 60

Query: 61  EEA-------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
             A             G         VTLEPC        CA  I +  I  VV    D 
Sbjct: 61  AHAEVVAMRAAAAVRGGWRLEDCALAVTLEPCLM------CAGAIGQARIPLVVFGAWDA 114

Query: 108 DVRVSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
                G     L       +  +   + + +    L  + 
Sbjct: 115 KAGACGSVWDVLRDSAALHRAEVRGGVRQEDCGRTLGDFF 154


>gi|297563744|ref|YP_003682718.1| CMP/dCMP deaminase zinc-binding protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848192|gb|ADH70212.1| CMP/dCMP deaminase zinc-binding protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 160

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 42/120 (35%), Gaps = 18/120 (15%)

Query: 12  SAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG----CPHAEVQALEEAGE- 65
            AA+      +  T   P V  +++  DG V+G G            HAEV AL  A   
Sbjct: 12  RAAIAEGEAAL-ETGDVP-VGAVVLDADGAVLGTGRNEREATGDPTAHAEVLALRAAARA 69

Query: 66  ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                  G T  VTLEPC        CA   +   + R+V    D     +G     +  
Sbjct: 70  RGEWRLGGCTLVVTLEPC------TMCAGATVLSRVDRLVYGARDAKAGAAGSVWDAVRD 123


>gi|332653265|ref|ZP_08419010.1| riboflavin biosynthesis protein RibD C- domain protein
           [Ruminococcaceae bacterium D16]
 gi|332518411|gb|EGJ48014.1| riboflavin biosynthesis protein RibD C- domain protein
           [Ruminococcaceae bacterium D16]
          Length = 176

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 4/97 (4%)

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
             ++ N   IY   R+L  L   L  R   ++ + GGA+VA   +    +D + L     
Sbjct: 80  HRQETNREGIYFWNRELTALADRLKTRHKGNIWICGGASVAGQLLKEDRIDKLWLSVIPT 139

Query: 319 VIGEGGIPSPLEEGYLEKNFMCVRRDYFGS--DVCLE 353
           V+G+G    P  E   E     V  + +    D+  E
Sbjct: 140 VLGKGLRLFP--ELSKELPLKLVSTEQWNGIVDLVYE 174


>gi|298241420|ref|ZP_06965227.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
           racemifer DSM 44963]
 gi|297554474|gb|EFH88338.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
           racemifer DSM 44963]
          Length = 197

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 9/130 (6%)

Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
           D         ++ +       I+V++               +I      D  + +  L  
Sbjct: 70  DSEEWTPEQRELSQAGRSVSPIVVSD--------TLTGNWPDISIIRRADAHQKIAELKR 121

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           +    +L+ G   + +  +   LVD I L    +V+GE G+P+ + +       + VR  
Sbjct: 122 QAGKDILITGSRTLWNDLLAHDLVDEIHLMIGNVVLGE-GVPAFVGKPPASLRLVEVRSW 180

Query: 345 YFGSDVCLEY 354
               ++ L Y
Sbjct: 181 KDSDNILLRY 190


>gi|256544495|ref|ZP_05471868.1| cytidine/deoxycytidylate deaminase family protein [Anaerococcus
           vaginalis ATCC 51170]
 gi|256399820|gb|EEU13424.1| cytidine/deoxycytidylate deaminase family protein [Anaerococcus
           vaginalis ATCC 51170]
          Length = 146

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 30/128 (23%)

Query: 15  LRFSRW-HVGLTSTNPSVACLIVK-DGIVIGRGV---------------TAYGG----CP 53
           ++ +    +  T     V C++V  +  +I  G                T   G      
Sbjct: 13  IKLAHMVALRGTCDRAYVGCVLVNGENRIISTGYNGSIKGNPHCDEVGHTMRDGHCIATI 72

Query: 54  HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           HAE+ AL    + G   + +  YVT  PC +      C + +I+ GI+ +    D     
Sbjct: 73  HAEMNALLYCAKEGIPVKNSICYVTHFPCLN------CTKSLIQAGIKEIYYSNDYRIDP 126

Query: 111 VSGRGLQW 118
            +   L+ 
Sbjct: 127 YAIELLEK 134


>gi|72392897|ref|XP_847249.1| deaminase [Trypanosoma brucei TREU927]
 gi|62176083|gb|AAX70202.1| deaminase, putative [Trypanosoma brucei]
 gi|70803279|gb|AAZ13183.1| deaminase, putative [Trypanosoma brucei brucei strain 927/4
           GUTat10.1]
          Length = 225

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 45/140 (32%), Gaps = 50/140 (35%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGI-----------------VIGRGVTAYG-- 50
           FM AAL+ +     L      V C++VK                    ++ RG  A    
Sbjct: 27  FMQAALKEA--TCALEEGEVPVGCVLVKADSSTAAQAQAGDDLALQKLIVARGRNATNRK 84

Query: 51  --GCPHAEVQALEEAGEEARGAT---------------------AYVTLEPCSHYGRSPP 87
                HAE  A+EE   +A   T                      YV +EPC        
Sbjct: 85  GHALAHAEFVAVEELLRQATAGTSENIGGGGNCGAVSQDLADYVLYVVVEPCIM------ 138

Query: 88  CAQFIIECGIRRVVVCVDDP 107
           CA  ++   +R+V     +P
Sbjct: 139 CAAMLLYNRVRKVYFGCTNP 158


>gi|119964333|ref|YP_947807.1| RibD C-terminal domain-containing protein [Arthrobacter aurescens
           TC1]
 gi|119951192|gb|ABM10103.1| putative RibD C-terminal domain protein [Arthrobacter aurescens
           TC1]
          Length = 180

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 10/106 (9%)

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDL-KKLLTILVGRGVTSLLVEGGAAVAHS 301
            P  + T ++    A      +I  +  D R+    LL     +    + + GG  +   
Sbjct: 72  TPCWVFTHHEYSAPA----GSDITFVRGDVREFAPDLLKDAGDKN---VWLVGGGDLVAQ 124

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
           F N+ L+  +I+    +V+G G    PL           V     G
Sbjct: 125 FANAGLLHEMIVTIIPVVLGAGKRLLPLNGPTAP--LELVSSKILG 168


>gi|115376009|ref|ZP_01463256.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Stigmatella aurantiaca DW4/3-1]
 gi|310824279|ref|YP_003956637.1| bifunctional deaminase-reductase domain-containing protein
           [Stigmatella aurantiaca DW4/3-1]
 gi|115367008|gb|EAU65996.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Stigmatella aurantiaca DW4/3-1]
 gi|309397351|gb|ADO74810.1| Bifunctional deaminase-reductase domain protein [Stigmatella
           aurantiaca DW4/3-1]
          Length = 192

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 9/105 (8%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P  + T    P +  A  +     +        +++    G+    L + GG  +   F+
Sbjct: 79  PTWVFTHRPLPAIPGANLRFTTEDVSAVH---AQMVEAAAGKN---LWLIGGGNLVAQFV 132

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
              L+D I+L    +V+G G    PL    L +         F  
Sbjct: 133 RQGLLDEILLSVVPVVLGGG---IPLLPAALTRPLELTGLTRFDR 174


>gi|297569251|ref|YP_003690595.1| CMP/dCMP deaminase zinc-binding protein [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925166|gb|ADH85976.1| CMP/dCMP deaminase zinc-binding protein [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 158

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 43/159 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S++  FM+     ++     T     V  ++V+D  ++  G                   
Sbjct: 9   SWEEYFMAITDLVAQRA---TCVRRKVGAILVRDRRIVATGYNGAPSGIRHCLEVGCLRE 65

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE  A+ +A   G   + +  + T  PCS       C++ +I 
Sbjct: 66  ELAVPSGERHELCRGLHAEQNAIIQAALHGVSLQSSMLFCTNMPCSI------CSKMLIN 119

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
            GI ++       D   +    + LS+ G+ + ++   E
Sbjct: 120 AGITKIYYREGYADSMAA----EMLSEAGVPLVQVAADE 154


>gi|297162755|gb|ADI12467.1| hypothetical protein SBI_09349 [Streptomyces bingchenggensis BCW-1]
          Length = 204

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 23/120 (19%)

Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
           P  +++         S  ++   L    I T   D V A   R +  +  +   +DL  +
Sbjct: 89  PAFVVVTSS---PPKS--VRLTDLDWTFITTGLPDAVTAARERSEAAS--FDSGKDLDVV 141

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
           L              GG A   S +++ L+D++ L+ + +V+G G   +PL  G   +  
Sbjct: 142 LM-------------GGGATIASALDTGLLDTLTLHLAPVVLGAG---TPLFTGGAPRTL 185


>gi|269122663|ref|YP_003310840.1| dihydrofolate reductase [Sebaldella termitidis ATCC 33386]
 gi|268616541|gb|ACZ10909.1| dihydrofolate reductase [Sebaldella termitidis ATCC 33386]
          Length = 172

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 285 RGVTS---LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341
           + ++S   + + GG  +    +++ +VD +I+  + +++G  GIP   ++  L K F   
Sbjct: 97  KNISSTKNIWIIGGTQILAPLLDNDMVDKMIIQIAPVLLGA-GIPLFTQKEVL-KRFYLE 154

Query: 342 RRDYFGS 348
             + +G 
Sbjct: 155 ELNQYGQ 161


>gi|305664624|ref|YP_003860911.1| cytidine deaminase [Maribacter sp. HTCC2170]
 gi|88708641|gb|EAR00877.1| cytidine deaminase [Maribacter sp. HTCC2170]
          Length = 160

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 3  VSSFDARFMSAALRFSRWHVGLTSTNPSVA-CLIVKDGI-VIG---RGVTAYGGCPHAEV 57
          ++  D   M  A+  +R       +N  V   +++ +G  VIG      +   G   AE 
Sbjct: 19 LNEQDRDLMHMAIE-ARKDAYAPYSNFMVGAAVLLANGKTVIGSNQENASYPSGL-CAER 76

Query: 58 QALEEAGEEARGATA 72
           A+ +AG +  G T 
Sbjct: 77 VAVFQAGAKYPGVTI 91


>gi|317126520|ref|YP_004100632.1| bifunctional deaminase-reductase domain protein [Intrasporangium
           calvum DSM 43043]
 gi|315590608|gb|ADU49905.1| bifunctional deaminase-reductase domain protein [Intrasporangium
           calvum DSM 43043]
          Length = 176

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-L 352
            G ++AHS     L+D   +Y   +V+G G    P   G        V  +    DV  L
Sbjct: 116 AGPSLAHSLGRLGLIDEFRIYLHPVVLGHGK---PYFAG-PRPRLRLVASEQVAEDVLRL 171

Query: 353 EYIGK 357
            Y+ +
Sbjct: 172 TYVPR 176


>gi|315173574|gb|EFU17591.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX1346]
          Length = 196

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 33/85 (38%)

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
           T  L+P +   E+    +  +  + +         D   L+  L       + + GG  V
Sbjct: 77  TQELSPDVYFYEDKHSYIITSHPEPSTASRTFTKEDPVTLIRRLKEEDGAGIWIVGGPKV 136

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323
               + + L+D+ IL    + +GEG
Sbjct: 137 VQPLLAADLIDTFILTTIPLFLGEG 161


>gi|315150283|gb|EFT94299.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX0012]
          Length = 196

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 33/85 (38%)

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
           T  L+P +   E+    +  +  + +         D   L+  L       + + GG  V
Sbjct: 77  TQELSPDVYFYEDKHSYIITSHPEPSTASRTFTKEDPVTLIRRLKEEDGAGIWIVGGPKV 136

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323
               + + L+D+ IL    + +GEG
Sbjct: 137 VQPLLAADLIDTFILTTIPLFLGEG 161


>gi|315144018|gb|EFT88034.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX2141]
          Length = 196

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 33/85 (38%)

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
           T  L+P +   E+    +  +  + +         D   L+  L       + + GG  V
Sbjct: 77  TQELSPDVYFYEDKHSYIITSHPEPSTASRTFTKEDPVTLIRRLKEEDGAGIWIVGGPKV 136

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323
               + + L+D+ IL    + +GEG
Sbjct: 137 VQPLLAADLIDTFILTTIPLFLGEG 161


>gi|312900570|ref|ZP_07759869.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX0470]
 gi|311292294|gb|EFQ70850.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX0470]
          Length = 196

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 33/85 (38%)

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
           T  L+P +   E+    +  +  + +         D   L+  L       + + GG  V
Sbjct: 77  TQELSPDVYFYEDKHSYIITSHPEPSTASRTFTKEDPVTLIRRLKEEDGAGIWIVGGPKV 136

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323
               + + L+D+ IL    + +GEG
Sbjct: 137 VQPLLAADLIDTFILTTIPLFLGEG 161


>gi|256852331|ref|ZP_05557707.1| dihydrofolate reductase [Enterococcus faecalis T8]
 gi|256712185|gb|EEU27217.1| dihydrofolate reductase [Enterococcus faecalis T8]
          Length = 180

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 33/85 (38%)

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
           T  L+P +   E+    +  +  + +         D   L+  L       + + GG  V
Sbjct: 61  TQELSPDVYFYEDKHSYIITSHPEPSTASRTFTKEDPVTLIRRLKEEDGAGIWIVGGPKV 120

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323
               + + L+D+ IL    + +GEG
Sbjct: 121 VQPLLAADLIDTFILTTIPLFLGEG 145


>gi|229547761|ref|ZP_04436486.1| dihydrofolate reductase family protein [Enterococcus faecalis
           TX1322]
 gi|307292491|ref|ZP_07572341.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX0411]
 gi|229307105|gb|EEN73092.1| dihydrofolate reductase family protein [Enterococcus faecalis
           TX1322]
 gi|306496464|gb|EFM66031.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX0411]
 gi|315028389|gb|EFT40321.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX4000]
          Length = 196

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 33/85 (38%)

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
           T  L+P +   E+    +  +  + +         D   L+  L       + + GG  V
Sbjct: 77  TQELSPDVYFYEDKHSYIITSHPEPSTASRTFTKEDPVTLIRRLKEEDGAGIWIVGGPKV 136

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323
               + + L+D+ IL    + +GEG
Sbjct: 137 VQPLLAADLIDTFILTTIPLFLGEG 161


>gi|227553719|ref|ZP_03983768.1| dihydrofolate reductase family protein [Enterococcus faecalis HH22]
 gi|229548277|ref|ZP_04437002.1| dihydrofolate reductase family protein [Enterococcus faecalis ATCC
           29200]
 gi|293384226|ref|ZP_06630115.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           R712]
 gi|293387107|ref|ZP_06631671.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           S613]
 gi|307269158|ref|ZP_07550515.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX4248]
 gi|307272162|ref|ZP_07553422.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX0855]
 gi|307282355|ref|ZP_07562563.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX0860]
 gi|307288723|ref|ZP_07568702.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX0109]
 gi|312904953|ref|ZP_07764091.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX0635]
 gi|312906341|ref|ZP_07765351.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           DAPTO 512]
 gi|312909687|ref|ZP_07768540.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Enterococcus faecalis DAPTO 516]
 gi|227177101|gb|EEI58073.1| dihydrofolate reductase family protein [Enterococcus faecalis HH22]
 gi|229306493|gb|EEN72489.1| dihydrofolate reductase family protein [Enterococcus faecalis ATCC
           29200]
 gi|291078435|gb|EFE15799.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           R712]
 gi|291083462|gb|EFE20425.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           S613]
 gi|306500336|gb|EFM69674.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX0109]
 gi|306503803|gb|EFM73029.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX0860]
 gi|306511051|gb|EFM80061.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX0855]
 gi|306514536|gb|EFM83094.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX4248]
 gi|310627617|gb|EFQ10900.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           DAPTO 512]
 gi|310631709|gb|EFQ14992.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX0635]
 gi|311289988|gb|EFQ68544.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Enterococcus faecalis DAPTO 516]
 gi|315026137|gb|EFT38069.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX2137]
 gi|315032108|gb|EFT44040.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX0017]
 gi|315035371|gb|EFT47303.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX0027]
 gi|315146752|gb|EFT90768.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX4244]
 gi|315153762|gb|EFT97778.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX0031]
 gi|315156910|gb|EFU00927.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX0043]
 gi|315158926|gb|EFU02943.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX0312]
 gi|315166066|gb|EFU10083.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX1302]
 gi|315167858|gb|EFU11875.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX1341]
 gi|315170547|gb|EFU14564.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX1342]
 gi|315574768|gb|EFU86959.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX0309B]
 gi|315582158|gb|EFU94349.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX0309A]
 gi|327534090|gb|AEA92924.1| riboflavin biosynthesis protein RibD domain protein [Enterococcus
           faecalis OG1RF]
 gi|329574578|gb|EGG56142.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX1467]
          Length = 196

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 33/85 (38%)

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
           T  L+P +   E+    +  +  + +         D   L+  L       + + GG  V
Sbjct: 77  TQELSPDVYFYEDKHSYIITSHPEPSTASRTFTKEDPVTLIRRLKEEDGAGIWIVGGPKV 136

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323
               + + L+D+ IL    + +GEG
Sbjct: 137 VQPLLAADLIDTFILTTIPLFLGEG 161


>gi|29374933|ref|NP_814086.1| hypothetical protein EF0294 [Enterococcus faecalis V583]
 gi|255970909|ref|ZP_05421495.1| dihydrofolate reductase [Enterococcus faecalis T1]
 gi|255973423|ref|ZP_05424009.1| dihydrofolate reductase [Enterococcus faecalis T2]
 gi|256617275|ref|ZP_05474121.1| dihydrofolate reductase [Enterococcus faecalis ATCC 4200]
 gi|256761278|ref|ZP_05501858.1| dihydrofolate reductase [Enterococcus faecalis T3]
 gi|256957759|ref|ZP_05561930.1| dihydrofolate reductase [Enterococcus faecalis DS5]
 gi|256959561|ref|ZP_05563732.1| dihydrofolate reductase [Enterococcus faecalis Merz96]
 gi|256963123|ref|ZP_05567294.1| dihydrofolate reductase [Enterococcus faecalis HIP11704]
 gi|257080023|ref|ZP_05574384.1| dihydrofolate reductase [Enterococcus faecalis JH1]
 gi|257083437|ref|ZP_05577798.1| dihydrofolate reductase [Enterococcus faecalis Fly1]
 gi|257085712|ref|ZP_05580073.1| dihydrofolate reductase [Enterococcus faecalis D6]
 gi|257088804|ref|ZP_05583165.1| dihydrofolate reductase [Enterococcus faecalis CH188]
 gi|257415085|ref|ZP_05592079.1| dihydrofolate reductase [Enterococcus faecalis AR01/DG]
 gi|257418131|ref|ZP_05595125.1| dihydrofolate reductase [Enterococcus faecalis T11]
 gi|257420637|ref|ZP_05597627.1| dihydrofolate reductase [Enterococcus faecalis X98]
 gi|294779249|ref|ZP_06744654.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Enterococcus faecalis PC1.1]
 gi|300861980|ref|ZP_07108060.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Enterococcus faecalis TUSoD Ef11]
 gi|29342391|gb|AAO80157.1| conserved hypothetical protein [Enterococcus faecalis V583]
 gi|255961927|gb|EET94403.1| dihydrofolate reductase [Enterococcus faecalis T1]
 gi|255966295|gb|EET96917.1| dihydrofolate reductase [Enterococcus faecalis T2]
 gi|256596802|gb|EEU15978.1| dihydrofolate reductase [Enterococcus faecalis ATCC 4200]
 gi|256682529|gb|EEU22224.1| dihydrofolate reductase [Enterococcus faecalis T3]
 gi|256948255|gb|EEU64887.1| dihydrofolate reductase [Enterococcus faecalis DS5]
 gi|256950057|gb|EEU66689.1| dihydrofolate reductase [Enterococcus faecalis Merz96]
 gi|256953619|gb|EEU70251.1| dihydrofolate reductase [Enterococcus faecalis HIP11704]
 gi|256988053|gb|EEU75355.1| dihydrofolate reductase [Enterococcus faecalis JH1]
 gi|256991467|gb|EEU78769.1| dihydrofolate reductase [Enterococcus faecalis Fly1]
 gi|256993742|gb|EEU81044.1| dihydrofolate reductase [Enterococcus faecalis D6]
 gi|256997616|gb|EEU84136.1| dihydrofolate reductase [Enterococcus faecalis CH188]
 gi|257156913|gb|EEU86873.1| dihydrofolate reductase [Enterococcus faecalis ARO1/DG]
 gi|257159959|gb|EEU89919.1| dihydrofolate reductase [Enterococcus faecalis T11]
 gi|257162461|gb|EEU92421.1| dihydrofolate reductase [Enterococcus faecalis X98]
 gi|294453678|gb|EFG22075.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Enterococcus faecalis PC1.1]
 gi|300848505|gb|EFK76262.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Enterococcus faecalis TUSoD Ef11]
 gi|323479507|gb|ADX78946.1| riboflavin biosynthesis protein RibD C- domain protein
           [Enterococcus faecalis 62]
          Length = 180

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 33/85 (38%)

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
           T  L+P +   E+    +  +  + +         D   L+  L       + + GG  V
Sbjct: 61  TQELSPDVYFYEDKHSYIITSHPEPSTASRTFTKEDPVTLIRRLKEEDGAGIWIVGGPKV 120

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323
               + + L+D+ IL    + +GEG
Sbjct: 121 VQPLLAADLIDTFILTTIPLFLGEG 145


>gi|119715511|ref|YP_922476.1| deaminase-reductase domain-containing protein [Nocardioides sp.
           JS614]
 gi|119536172|gb|ABL80789.1| bifunctional deaminase-reductase domain protein [Nocardioides sp.
           JS614]
          Length = 219

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSF 302
           PV ++T         + R +     +     ++++L   V   G + + V GG   A  F
Sbjct: 105 PVYVLT---HTAPRPSIRMEGGTTFHFRSTAIEEVLAEAVEAAGGSDVRVGGGVGTARDF 161

Query: 303 INSRLVDSIILYRSQIVIGEGGI 325
           + + LVD + +  + I++G G  
Sbjct: 162 LRAGLVDRLHVAIAPILVGGGAR 184


>gi|108798568|ref|YP_638765.1| bifunctional deaminase-reductase-like protein [Mycobacterium sp.
           MCS]
 gi|119867667|ref|YP_937619.1| deaminase-reductase domain-containing protein [Mycobacterium sp.
           KMS]
 gi|108768987|gb|ABG07709.1| bifunctional deaminase-reductase-like protein [Mycobacterium sp.
           MCS]
 gi|119693756|gb|ABL90829.1| bifunctional deaminase-reductase domain protein [Mycobacterium sp.
           KMS]
          Length = 188

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 2/88 (2%)

Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
            +  D  +++T L      +L V  GA +A   + + LVD   +  + + +G G    P 
Sbjct: 101 LERGDPVEVVTRLKAETDGNLEV-AGATLAAPIVQAGLVDEYRIVLAPVAVGGGTPFFPT 159

Query: 330 EEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
              ++    +  R    G+ V L Y  +
Sbjct: 160 LPSWISLRLLENRTFPCGT-VLLRYEAE 186


>gi|229822319|ref|YP_002883845.1| bifunctional deaminase-reductase domain protein [Beutenbergia
           cavernae DSM 12333]
 gi|229568232|gb|ACQ82083.1| bifunctional deaminase-reductase domain protein [Beutenbergia
           cavernae DSM 12333]
          Length = 196

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 9/117 (7%)

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
              P ++ +      L       N  ++  D  D  + L     R + +L   G  ++  
Sbjct: 71  DATPKVVFSST----LTEPLEWVNTRLVRGDAADAVRELKRDGDRELRTL---GSLSLCR 123

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLEYIG 356
           S + + LVD   +    ++ G  G    + +GY +     V    F G    LEY+ 
Sbjct: 124 SLLEAGLVDRFRVVMFPVITGRTGSER-IYDGYPDVALELVETRTFDGRTQLLEYVP 179


>gi|84494757|ref|ZP_00993876.1| hypothetical protein JNB_08164 [Janibacter sp. HTCC2649]
 gi|84384250|gb|EAQ00130.1| hypothetical protein JNB_08164 [Janibacter sp. HTCC2649]
          Length = 189

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 3/55 (5%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
           GG  +A   + + LVD I  Y    V G G    P              +  FGS
Sbjct: 124 GGPTLAADALRAGLVDEITAYVMPHVAGGG---LPWLPDGFTSELTLREQRTFGS 175


>gi|227872741|ref|ZP_03991064.1| hypothetical protein HMPREF6123_1003 [Oribacterium sinus F0268]
 gi|227841402|gb|EEJ51709.1| hypothetical protein HMPREF6123_1003 [Oribacterium sinus F0268]
          Length = 83

 Score = 44.1 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 25/77 (32%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKD-------------------GIVIGRGVTAY- 49
          +M  AL  ++     +  +  +  LIV D                   G ++GRG     
Sbjct: 7  YMKMALSLAKKAA--SRGDVPIGALIVYDGTKPDSPMGRLCQAKGILPGTILGRGYNRRN 64

Query: 50 ---GGCPHAEVQALEEA 63
                 H E+ A+E+A
Sbjct: 65 QKNNALYHGEILAIEKA 81


>gi|188592129|ref|YP_001796727.1| hypothetical protein RALTA_B0292 [Cupriavidus taiwanensis LMG
           19424]
 gi|170938503|emb|CAP63490.1| Conserved hypothetical protein; Bifunctional deaminase-reductase
           C-terminal domain [Cupriavidus taiwanensis LMG 19424]
          Length = 178

 Score = 44.1 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 4/84 (4%)

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           A   PV++++            +  +             +  L   GV  + V+GG  V 
Sbjct: 65  AYDRPVVVLSRQLAGKPVPEALQGKVRFSEA---TPADAMAQLEAEGVRRVYVDGG-QVV 120

Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323
            SF+   L+  +++    ++IG G
Sbjct: 121 QSFLRDGLIADMVVTTVPVLIGTG 144


>gi|15673123|ref|NP_267297.1| dCMP deaminase [Lactococcus lactis subsp. lactis Il1403]
 gi|281491636|ref|YP_003353616.1| dCMP deaminase [Lactococcus lactis subsp. lactis KF147]
 gi|12724103|gb|AAK05239.1|AE006346_8 dCMP deaminase [Lactococcus lactis subsp. lactis Il1403]
 gi|281375354|gb|ADA64867.1| dCMP deaminase [Lactococcus lactis subsp. lactis KF147]
 gi|326406687|gb|ADZ63758.1| dCMP deaminase [Lactococcus lactis subsp. lactis CV56]
          Length = 147

 Score = 44.1 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 30/101 (29%)

Query: 31  VACLIVK-DGIVIGRGVTA----------------YGG----CPHAEVQALEEA---GEE 66
           V  L+V  +G ++  G                     G      HAE  A+ +A   G  
Sbjct: 33  VGALLVSPNGQLLSTGYNGAVSGMPHCTDIGCTEDKYGHCVATVHAEQNAIAQAAKHGVS 92

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
             GA  Y TL PC        C + ++  G++ +    +  
Sbjct: 93  PEGAILYTTLFPCL------ACLKLVVAAGVKEIKYIDEYH 127


>gi|157413307|ref|YP_001484173.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
           marinus str. MIT 9215]
 gi|157387882|gb|ABV50587.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
           marinus str. MIT 9215]
          Length = 171

 Score = 44.1 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 27/126 (21%)

Query: 10  FM----SAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYG----GCPHAEVQAL 60
           +M      ++   +  + + S       +I+ + G  IGRGV           HAE+ AL
Sbjct: 26  WMNSLLRRSIEIGKVELPICS-------IILDERGRCIGRGVNRRNINKDPLGHAEIMAL 78

Query: 61  EEAG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
            +A            T    LEPC        C+  +I+  + +V+    D      G  
Sbjct: 79  RQASLIKNDWRFNECTIITNLEPC------TMCSSALIQARMGKVIFGAYDKKRGGLGGS 132

Query: 116 LQWLSQ 121
           +     
Sbjct: 133 IDLSKH 138


>gi|115391165|ref|XP_001213087.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114194011|gb|EAU35711.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 193

 Score = 44.1 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 8/62 (12%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           + V+GG  V   F+    VD +++  + +++G G    PL  G        V     G D
Sbjct: 127 VYVDGG-LVIQEFLRRGWVDEMVVTHAPVLLGRG---IPLFGGLE----KDVELRLLGVD 178

Query: 350 VC 351
           V 
Sbjct: 179 VI 180


>gi|111220356|ref|YP_711150.1| hypothetical protein FRAAL0887 [Frankia alni ACN14a]
 gi|111147888|emb|CAJ59553.1| conserved hypothetical protein [Frankia alni ACN14a]
          Length = 207

 Score = 44.1 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
           GG  +A   I + LVD   L+ + +V+G G    P
Sbjct: 143 GGPTLAGHAIRAGLVDECHLFLTPVVVGAGVRALP 177


>gi|116619171|ref|YP_821327.1| deaminase-reductase domain-containing protein [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116222333|gb|ABJ81042.1| bifunctional deaminase-reductase domain protein [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 184

 Score = 44.1 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 32/75 (42%)

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           T+  + VL+    K+    +      +KK    L       + + GG  +  SF+++  +
Sbjct: 76  TKVANFVLSRKPPKRAAPGVEFVAEPVKKFARRLRAEPGKHIWMMGGGELIASFLDAGEI 135

Query: 309 DSIILYRSQIVIGEG 323
           D   ++    +IGEG
Sbjct: 136 DEFDIHVIPTLIGEG 150


>gi|220913494|ref|YP_002488803.1| bifunctional deaminase-reductase domain protein [Arthrobacter
           chlorophenolicus A6]
 gi|219860372|gb|ACL40714.1| bifunctional deaminase-reductase domain protein [Arthrobacter
           chlorophenolicus A6]
          Length = 191

 Score = 44.1 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GGA +A + + + LVD   ++ S +V+G G
Sbjct: 125 GGATIAVAALTAGLVDECQVFVSPVVVGGG 154


>gi|120600291|ref|YP_964865.1| CMP/dCMP deaminase, zinc-binding [Shewanella sp. W3-18-1]
 gi|120560384|gb|ABM26311.1| CMP/dCMP deaminase, zinc-binding [Shewanella sp. W3-18-1]
          Length = 497

 Score = 44.1 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 41/98 (41%), Gaps = 14/98 (14%)

Query: 47  TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           T YG   HAE++AL  A   G    GAT Y T  PC +      CA+ I+  G+ +VV  
Sbjct: 338 TEYGRAVHAEMEALMSAARTGISVLGATLYTTTFPCHN------CAKHIVAAGVGKVVFI 391

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
              P           L    I VDR    E K+  + +
Sbjct: 392 EPYPK-----SFATKLHSDSIKVDRFNGDETKVHFYPF 424


>gi|302562655|ref|ZP_07314997.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces griseoflavus Tu4000]
 gi|302480273|gb|EFL43366.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces griseoflavus Tu4000]
          Length = 188

 Score = 44.1 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-KNFMCVRRDYF-GSDVC 351
           GGA +A + + + L+D   +    +++G G   +P         N   V    F G  V 
Sbjct: 125 GGAKLAGAAMRAGLIDEYAIVTHPVLVGGG---TPFFTALDGWVNLDLVETRTFPGGVVL 181

Query: 352 LEY 354
             Y
Sbjct: 182 TRY 184


>gi|317153179|ref|YP_004121227.1| CMP/dCMP deaminase zinc-binding protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943430|gb|ADU62481.1| CMP/dCMP deaminase zinc-binding protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 165

 Score = 44.1 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 42/133 (31%), Gaps = 23/133 (17%)

Query: 1   MPVSSFD-------ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG-- 51
           MP++  D          M  A   +         +P  A L   DG ++        G  
Sbjct: 1   MPLTPPDPPAGTSWRSLMDVAFAQACMAA-KEGESPIGAALFAPDGALLAAARNNPVGLN 59

Query: 52  --CPHAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
               HAEV  L +A          G    VTLEPC        C   +I   +  VV+  
Sbjct: 60  DPTAHAEVLCLRQAAARLGNYRLTGTILAVTLEPCLM------CTGALIHARVAGVVMGA 113

Query: 105 DDPDVRVSGRGLQ 117
            DP        LQ
Sbjct: 114 LDPRAGAVISNLQ 126


>gi|254518952|ref|ZP_05131008.1| cytidine/deoxycytidylate deaminase [Clostridium sp. 7_2_43FAA]
 gi|226912701|gb|EEH97902.1| cytidine/deoxycytidylate deaminase [Clostridium sp. 7_2_43FAA]
          Length = 160

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 20/111 (18%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVI-----GRGVTAYGGCPHAEVQALEE 62
            ++   +  S+      S N    C++V KDG +I       G        HAE Q +E+
Sbjct: 7   YYLRKCVEVSKRSR--ESGNMPFGCILVDKDGNIILEQMNIEGTDYKC-TGHAETQLMEK 63

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           A  +         T Y T EPC+       C   I    + R+V  + + D
Sbjct: 64  ASMKYSKSFLWDCTLYSTAEPCAM------CTGAIYWGNVGRIVYGLSERD 108


>gi|300694443|ref|YP_003750416.1| bifunctional deaminase-reductase-like [Ralstonia solanacearum
           PSI07]
 gi|299076480|emb|CBJ35798.1| Bifunctional deaminase-reductase-like [Ralstonia solanacearum
           PSI07]
          Length = 220

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 15/118 (12%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                 PV I+T +  P + +        I       L +      G  V    + GG  
Sbjct: 100 NPPYHVPVFILTHHARPPIEMEGDTTFHFITGGIREALDRAREAAAGMDVR---IGGGPD 156

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
               ++   L+D + +  + +++G G           E  F  V     G + C+E++
Sbjct: 157 TIQQYLREGLIDELHIAIAPVLLGRG-----------ESLFEGVDLRALGYE-CVEFV 202


>gi|226357300|ref|YP_002787040.1| cytidine/deoxycytidylate deaminase [Deinococcus deserti VCD115]
 gi|226319290|gb|ACO47286.1| putative Cytidine/deoxycytidylate deaminase, zinc-binding region
           (CMP/dCMP deaminase, zinc-binding) [Deinococcus deserti
           VCD115]
          Length = 221

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 44/119 (36%), Gaps = 26/119 (21%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------------HAEVQ 58
           AAL  +     L  + P  AC++ ++G V+ RG     G P              HAE+ 
Sbjct: 20  AALSEAWEA-YLHGSYPIGACVVDREGHVLARGRN-RLGEPRRVEAGVISGHDLAHAEIN 77

Query: 59  ALEEAGEEARGA----TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           AL    +  R      T   T++PC      P CA  I    +R V     DP    + 
Sbjct: 78  ALLALTDMPRPECYSWTVLTTVQPC------PQCAGAIAMSAVRAVEYAAPDPWAGCTH 130


>gi|126696279|ref|YP_001091165.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
           marinus str. MIT 9301]
 gi|126543322|gb|ABO17564.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
           marinus str. MIT 9301]
          Length = 171

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 40/120 (33%), Gaps = 20/120 (16%)

Query: 39  GIVIGRGVTAYG----GCPHAEVQALEEAG-----EEARGATAYVTLEPCSHYGRSPPCA 89
           G  IGRGV           HAE+ AL +A                 LEPC        CA
Sbjct: 53  GRCIGRGVNRRNINNDPLGHAEIMALRQASLIKNDWRFNECIIITNLEPC------TMCA 106

Query: 90  QFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-----IIVDRMMESEGKIFLHAYLTR 144
             +I+  + +VV    D      G  +     K       IV  ++E E    L  +  +
Sbjct: 107 SALIQARMGKVVFGAYDKKRGGLGGSIDLSKHKSSHHKMEIVGGILEDECCKNLQLWFKK 166


>gi|333030804|ref|ZP_08458865.1| bifunctional deaminase-reductase domain protein [Bacteroides
           coprosuis DSM 18011]
 gi|332741401|gb|EGJ71883.1| bifunctional deaminase-reductase domain protein [Bacteroides
           coprosuis DSM 18011]
          Length = 176

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 45/102 (44%), Gaps = 5/102 (4%)

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
           V+    R+ + + ++    +  + +  L       + + GG+ +    +  +L+D +I+ 
Sbjct: 75  VITRQNREASNDQLHFINEEWIEKIRELKKEEGKDIWLVGGSEILSVLLKEKLIDKMIIV 134

Query: 315 RSQIVIGEGGIPSPLEEGYLE-KNFMCVRRDYFGSDVCL-EY 354
           +  I++G G    PL +G  E   +  +R   + + +   EY
Sbjct: 135 QYPILLGPG---IPLFQGNQEVSMWSIIRHRIYENGILYTEY 173


>gi|315639946|ref|ZP_07895077.1| dihydrofolate reductase [Enterococcus italicus DSM 15952]
 gi|315484371|gb|EFU74836.1| dihydrofolate reductase [Enterococcus italicus DSM 15952]
          Length = 108

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           + + GG  +  S + S L+D   +  + + +G G    P  EG  E+    V     G  
Sbjct: 30  IWIVGGGGLVTSLMASELIDDYWIQLAPVFLGSGKRLFP--EGDYEQRVTFVEATQMGEM 87

Query: 350 VCLEY 354
           V L Y
Sbjct: 88  VELHY 92


>gi|269794762|ref|YP_003314217.1| dihydrofolate reductase [Sanguibacter keddieii DSM 10542]
 gi|269096947|gb|ACZ21383.1| dihydrofolate reductase [Sanguibacter keddieii DSM 10542]
          Length = 183

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 35/115 (30%), Gaps = 10/115 (8%)

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTSLLVEGGAAVA 299
                 + T  D PV        ++  +     D L  +      R +    V GG  +A
Sbjct: 75  GDKTTFVFTTRDLPV----PEGADVRFVSGAVADALPAIREAAGERDI---WVVGGGDLA 127

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
              ++   +D I +  + + +  GG P  L           V     G    L Y
Sbjct: 128 GQLLDIGALDEIAISVAPVAL-AGGAP-LLPRRVESDRLHLVSAKAVGQFARLVY 180


>gi|325963129|ref|YP_004241035.1| dihydrofolate reductase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469216|gb|ADX72901.1| dihydrofolate reductase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 198

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
           ++    APV ++T +  P L +A       +       L +      G+ V    + GGA
Sbjct: 83  VEPPYHAPVFVLTHHPRPPLQMAGGTTFHFVAEGIEAALDQARNAANGKDVA---IAGGA 139

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           A A  ++++ L+D + L+ + +V+G G  
Sbjct: 140 ATARQYLSAGLIDELRLHIAPLVLGAGAR 168


>gi|319782622|ref|YP_004142098.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317168510|gb|ADV12048.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 199

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GGA  A + I + LVD   L+ +  V+G G
Sbjct: 137 GGAGFASALIAAGLVDEFQLFINPAVLGAG 166


>gi|220910699|ref|YP_002486009.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Cyanothece sp. PCC 7425]
 gi|219867471|gb|ACL47808.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Cyanothece sp. PCC 7425]
          Length = 191

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 7/95 (7%)

Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            +N+ +I  +     K L   +G+G+    + GGA +A     +RL+D +IL  +  ++G
Sbjct: 100 DENVELISENSIQFVKTLKSGLGKGI---WLCGGANLATELFANRLIDQLILKVNPFLMG 156

Query: 322 EGGIPSPLEEGYLEKN-FMCVRRDYFGSDVCLEYI 355
            G    PL  G +++       R  + + V L Y 
Sbjct: 157 SG---IPLFSGVIQQTALELTDRKIYNNGVLLLYY 188


>gi|291301437|ref|YP_003512715.1| deaminase-reductase domain-containing protein [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570657|gb|ADD43622.1| deaminase-reductase domain-containing protein [Stackebrandtia
           nassauensis DSM 44728]
          Length = 186

 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 34/118 (28%), Gaps = 8/118 (6%)

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
              P  + T    P +       +I     D   +   +    G     + + GG  +  
Sbjct: 76  GERPTWVFTHRQLPAIP----GADIRFASGDVGPVHDEMVAAAGE--RDVWIAGGGELVG 129

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
            F +   +D +    + + +  GG P  L           V  +  G    L Y   N
Sbjct: 130 QFADQGRLDELRFSVAPVTL-TGGAP-LLPRRLTASRLELVSVNRNGQFAELTYRVMN 185


>gi|46204383|ref|ZP_00209388.1| COG0590: Cytosine/adenosine deaminases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 111

 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 36/115 (31%), Gaps = 19/115 (16%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRG----VTAYGGCPHA 55
           M     D   +  A+  +   V           ++V  DG V   G            HA
Sbjct: 1   MDTLVVDTAHLYRAVALAVDSVAHAGG--PFGAVLVTADGQVF-EGNNRVTQDNDPTAHA 57

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           EV A+  A       +  GAT Y + EPC      P C    +   +  V    D
Sbjct: 58  EVTAIRRACAALGTFDLTGATLYSSCEPC------PMCLASALWARVHAVHYATD 106


>gi|220913945|ref|YP_002489254.1| CMP/dCMP deaminase zinc-binding [Arthrobacter chlorophenolicus A6]
 gi|219860823|gb|ACL41165.1| CMP/dCMP deaminase zinc-binding [Arthrobacter chlorophenolicus A6]
          Length = 164

 Score = 44.1 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 17/118 (14%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIV---IGRGVTAYGGCPHAE 56
           M  +    +F++ ++R +  +V  +        +IV  DG     + R         HAE
Sbjct: 1   MSTTVTAEQFLARSIRLATANVLNSGG--PFGAMIVTADGKTFDGVNRVTADNDPTAHAE 58

Query: 57  VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           V A+  A       +  GA  Y + EPC      P C    +   + RVV   D  D 
Sbjct: 59  VTAIRTACREMGTFDLSGAVLYTSCEPC------PMCLASALWARVERVVFAADRHDA 110


>gi|162147097|ref|YP_001601558.1| cytidine deaminase protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785674|emb|CAP55245.1| putative cytidine deaminase protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 193

 Score = 44.1 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 16/102 (15%)

Query: 30  SVACLIV-KDGIVIGRGVTA-YGG---CPHAEVQALEEA-----GEEARGATAYVTLEPC 79
            V  +++  DG ++ R       G     HAE+  +  A          G T  VTLEPC
Sbjct: 47  PVGAVLLGPDGTILARAGNQVEAGHDAAAHAEMLVMRAAARILGSPRLTGCTLVVTLEPC 106

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                 P CA   +   + R+V    DP       G + L++
Sbjct: 107 ------PMCAAASVHFRVGRIVFGAYDPKGGGVEHGPRLLAR 142


>gi|292669195|ref|ZP_06602621.1| RibD domain protein [Selenomonas noxia ATCC 43541]
 gi|292649036|gb|EFF67008.1| RibD domain protein [Selenomonas noxia ATCC 43541]
          Length = 108

 Score = 44.1 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 1/82 (1%)

Query: 267 IIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           I   D  D    +  L     V +L++ GG  +  SF+   L D I L  +    G   +
Sbjct: 7   IAGEDALDCALAMDKLFHLFHVRTLMLGGGGILNWSFLQEGLCDEISLVIAAAADGTAKM 66

Query: 326 PSPLEEGYLEKNFMCVRRDYFG 347
           P+   +         +     G
Sbjct: 67  PALFSDAGGFAENKALSLRLLG 88


>gi|116334097|ref|YP_795624.1| dihydrofolate reductase [Lactobacillus brevis ATCC 367]
 gi|116099444|gb|ABJ64593.1| Dihydrofolate reductase [Lactobacillus brevis ATCC 367]
          Length = 177

 Score = 44.1 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 3/81 (3%)

Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           I     DL  L   L  +    + + GG A+    I   L+D + L  + + +G+G    
Sbjct: 89  ITFTSEDLLGLARRLKQQSGN-VWIIGGQAILTPLIADDLIDELYLQIAPVTLGQG--KR 145

Query: 328 PLEEGYLEKNFMCVRRDYFGS 348
              +     +F        G 
Sbjct: 146 LFGDLNRRHHFHLQSVHPLGP 166


>gi|325528019|gb|EGD05243.1| cytidine/deoxycytidylate deaminase [Burkholderia sp. TJI49]
          Length = 155

 Score = 44.1 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 15/82 (18%)

Query: 30  SVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
             A +IV+DG ++               HAE+ A+ +A      E       Y+   PC 
Sbjct: 21  PFATVIVRDGEIVAESPNLVAQTRDPTAHAEILAVRDACRRLGTEHLTDCEIYILASPC- 79

Query: 81  HYGRSPPCAQFIIECGIRRVVV 102
                P C   +  C  +RVV 
Sbjct: 80  -----PMCLGSLYYCSPKRVVY 96


>gi|239820426|ref|YP_002947611.1| bifunctional deaminase-reductase domain protein [Variovorax
           paradoxus S110]
 gi|239805279|gb|ACS22345.1| bifunctional deaminase-reductase domain protein [Variovorax
           paradoxus S110]
          Length = 214

 Score = 44.1 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GGA  A  ++ + LVD + L+ + I++G G
Sbjct: 152 GGARAAQQYLKAGLVDEMQLHLAPILLGGG 181


>gi|163745323|ref|ZP_02152683.1| CMP/dCMP deaminase, zinc-binding protein [Oceanibulbus indolifex
           HEL-45]
 gi|161382141|gb|EDQ06550.1| CMP/dCMP deaminase, zinc-binding protein [Oceanibulbus indolifex
           HEL-45]
          Length = 153

 Score = 44.1 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 43/124 (34%), Gaps = 33/124 (26%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGC--------- 52
            +++DARF+  A   S W          V  +IV  D  +   G                
Sbjct: 4   QATWDARFLQLAETISSWSEDRDF---HVGAVIVGPDHEICATGYNGLPRGVASVDPARF 60

Query: 53  -----------PHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                       HAE  A+  A   G    G T Y+   PC+       C + II+CGI 
Sbjct: 61  DRASGEKFYWFEHAERNAIYNAARIGVPLIGCTIYINRFPCAD------CTRAIIQCGID 114

Query: 99  RVVV 102
           +++ 
Sbjct: 115 KIIC 118


>gi|300088321|ref|YP_003758843.1| CMP/dCMP deaminase zinc-binding protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528054|gb|ADJ26522.1| CMP/dCMP deaminase zinc-binding protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 157

 Score = 44.1 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 44/158 (27%), Gaps = 45/158 (28%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
           M     D  F+  A   +            V  + VK+  ++  G               
Sbjct: 1   MNRPHTDDYFLKIAAVVAERSTCRRR---HVGAVAVKNKHILTTGYNGAPAGVPDCLELG 57

Query: 47  -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQ 90
                               HAE   + +A   G    G+T Y T  PC        CA+
Sbjct: 58  CLRDENNIPSGTRHEICRAVHAEQNVIIQAAQHGVNLEGSTVYCTHTPCI------LCAK 111

Query: 91  FIIECGIRR-VVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            +    I++ V       D       ++   Q G+ V+
Sbjct: 112 MLANARIKKFVSFGQYADDAF-----IELFRQVGVEVE 144


>gi|302417458|ref|XP_003006560.1| bifunctional deaminase-reductase domain-containing protein
           [Verticillium albo-atrum VaMs.102]
 gi|261354162|gb|EEY16590.1| bifunctional deaminase-reductase domain-containing protein
           [Verticillium albo-atrum VaMs.102]
          Length = 181

 Score = 44.1 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 55/175 (31%), Gaps = 34/175 (19%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
              +   IA + D  I      +  I    S +    L ++  + ++G  T  A      
Sbjct: 1   MPRVRYNIATTLDGFIASLDGSTTWILDDPSIDFT-ALYSEFSSFVMGRKTYEA-----M 54

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
                    +P+            D  +I                 V++   ++K+   I
Sbjct: 55  LHHGETSGANPL-----------ADHHVI-----------------VISKTLKQKDHPDI 86

Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
                D   ++  L       + + GG  +A  F+ + L+D++       +IG G
Sbjct: 87  EIVRDDYLDVVRNLKSGQGKDIWLMGGGRLASEFLAAELLDAVETAVMPAIIGRG 141


>gi|23016527|ref|ZP_00056282.1| COG0262: Dihydrofolate reductase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 173

 Score = 44.1 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 55/172 (31%), Gaps = 36/172 (20%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
               I+ S D  I  A      +  F S +         D  +  IGTV          +
Sbjct: 5   FRAYISASLDGYIADADGSIAWMKPFDSVDYG------FDGFMEHIGTV----------V 48

Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD 271
            G   +  +R +     +                I+VT       ++     N+      
Sbjct: 49  MGRTTYEHLRAM----GRWPH--------GDKRCIVVTS-----RSMETAPDNVEPWLG- 90

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
             DL +L+  L       + V GGA    +F++   +D   L+   +++G G
Sbjct: 91  --DLAQLVADLKTSTAGDVWVAGGAKALRAFLDLGAIDHFDLFVMPVLLGRG 140


>gi|327192633|gb|EGE59574.1| putative dihydrofolate reductase protein [Rhizobium etli CNPAF512]
          Length = 185

 Score = 44.1 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           LT L      ++ + G A +A S + + L+D I +    +++G G 
Sbjct: 106 LTRLKQEEGKTIFIFGSADLADSLLKAGLIDEIRICVVPVILGAGN 151


>gi|256376193|ref|YP_003099853.1| CMP/dCMP deaminase zinc-binding [Actinosynnema mirum DSM 43827]
 gi|255920496|gb|ACU36007.1| CMP/dCMP deaminase zinc-binding [Actinosynnema mirum DSM 43827]
          Length = 158

 Score = 44.1 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 34/109 (31%), Gaps = 17/109 (15%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE 65
           ++  ++  +  +V           L+ +   V+  G            HAEV A+  A  
Sbjct: 9   WLRRSVDLAVRNVADGGG--PFGALVARGDEVVATGANRVTADLDPTAHAEVVAIRAACR 66

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
                   G     + EPC      P C    +   + RVV   D  D 
Sbjct: 67  ALGDFSLAGCVLVSSCEPC------PLCLSAALWARVERVVYAADRHDA 109


>gi|302695431|ref|XP_003037394.1| hypothetical protein SCHCODRAFT_46727 [Schizophyllum commune H4-8]
 gi|300111091|gb|EFJ02492.1| hypothetical protein SCHCODRAFT_46727 [Schizophyllum commune H4-8]
          Length = 288

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 51/159 (32%), Gaps = 40/159 (25%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIVK---DGIVIGRGVTA---------YGGCP 53
           +DA FM+ A   +  H         V  ++V       +I  G             GGCP
Sbjct: 128 WDAYFMTIA-SLA-SHRSNCMKR-RVGAVLVDVRGGNRIIATGYNGTPRGLTNCNAGGCP 184

Query: 54  --------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
                         HAE  AL EAG E    GA  Y    PC        C   II+ G+
Sbjct: 185 RCNTGMESVECICLHAEENALLEAGRERVGPGAVLYCNTCPCLK------CTVKIIQTGV 238

Query: 98  RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI 136
             VV  +     +V         + G+ + R   +    
Sbjct: 239 STVVYNLSY---KVDDASAALFKESGVELRRYNPNHKHY 274


>gi|310722526|ref|YP_003969349.1| Cd dCMP deaminase [Aeromonas phage phiAS5]
 gi|306021369|gb|ADM79903.1| Cd dCMP deaminase [Aeromonas phage phiAS5]
          Length = 182

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 42/142 (29%), Gaps = 55/142 (38%)

Query: 30  SVACLIVKDGIVIGRGV------------------------------------------- 46
            V  +I KD   I  G                                            
Sbjct: 23  RVGAIIAKDDRPISSGYNGTVSDQPNCDEVALDNGWAEYVDVPGVGKELRLREDKSDDYS 82

Query: 47  -TAYGGCPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
             A     HAE+ A+      G+   GAT Y T+ PC      P CA+ I +  IR +V 
Sbjct: 83  AWAKSNVIHAEMNAILFAARGGKSIEGATMYCTMAPC------PDCAKMIAQSRIRTLVY 136

Query: 103 CVDDPDVRVSGRGLQWLSQKGI 124
           C +    R      + L+  G+
Sbjct: 137 CEEYNGAR--QDWSKTLTDCGV 156


>gi|88813710|ref|ZP_01128936.1| Pyrimidine reductase, riboflavin biosynthesis, RibD [Nitrococcus
           mobilis Nb-231]
 gi|88789029|gb|EAR20170.1| Pyrimidine reductase, riboflavin biosynthesis, RibD [Nitrococcus
           mobilis Nb-231]
          Length = 272

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 7/133 (5%)

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA-FRKKNINI- 267
           R NGL    P  + L       L   +++      + I T N  P   +A    + +++ 
Sbjct: 116 RRNGLAA-QPDVVFLSEDLDFPLPKALLQEGR--TISIFTANTPPREQIAELAAQGVSVE 172

Query: 268 --IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             +     D K ++  L   G        G  V H+  ++  +D++ L     ++G    
Sbjct: 173 RFVGNGRIDGKDIVARLTALGYRRAYCVAGPQVLHTLASAGCLDTLFLTTVHRLLGGSDF 232

Query: 326 PSPLEEGYLEKNF 338
            + ++   L+   
Sbjct: 233 STIMQGALLDAPL 245


>gi|257067604|ref|YP_003153859.1| pyrimidine reductase, riboflavin biosynthesis [Brachybacterium
           faecium DSM 4810]
 gi|256558422|gb|ACU84269.1| pyrimidine reductase, riboflavin biosynthesis [Brachybacterium
           faecium DSM 4810]
          Length = 246

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 45/150 (30%), Gaps = 22/150 (14%)

Query: 194 LVGIGT---VLADDPELTCRLNGLQEHSP------------MRIILDPHFKLSLDSKIIK 238
           L G GT   +L D P L   L    E  P                +D    L  D     
Sbjct: 53  LSGSGTSRAILGDAPAL--ELAEPSEPVPAGDFLAETDAEVFYFAVDRSGTLPWDRSSFT 110

Query: 239 --TALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVG-RGVTSLLVE 293
                   V ++  +         R   ++ +    +  D+ + +  +     V  +++ 
Sbjct: 111 YFDVEAHIVELIPASASEAFKAHLRSVGVSYLLAGDEQLDMAEAVRRIGEVFSVEEIILG 170

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GG  +  S +   L D I L       GE 
Sbjct: 171 GGGTLNWSMVRDGLCDEISLVLMPTADGEN 200


>gi|118588673|ref|ZP_01546081.1| bifunctional deaminase-reductase, C-terminal [Stappia aggregata IAM
           12614]
 gi|118438659|gb|EAV45292.1| bifunctional deaminase-reductase, C-terminal [Stappia aggregata IAM
           12614]
          Length = 167

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 39/168 (23%)

Query: 160 QDNMIGMAGCGSVPITGFISKNQVH---LLRAQSDAILVGIGTVLADDPELTCRLNGLQE 216
            D  I  +      +      ++ H      A  D IL+G GT        T R      
Sbjct: 1   MDGFIARSDGDIAWLLERDDPSEDHGYDAFIADIDVILMGRGTFEK---MHTVRP--WPY 55

Query: 217 HSPMRIILDPHF-KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275
           H P+ ++L     +  L   ++    +A                                
Sbjct: 56  HRPV-VVLSSTLTRSDLSEDLLDKVRVA----------------------------NLSP 86

Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           ++ + +L   G   + ++GG  +  SF+ + L+  +++    +++GEG
Sbjct: 87  EEAMRMLQIEGHRKVYIDGG-LLIQSFLRAGLIADMVITSVPVLLGEG 133


>gi|325003198|ref|ZP_08124310.1| deaminase-reductase domain-containing protein [Pseudonocardia sp.
           P1]
          Length = 183

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLE 353
           G  +A + + + +VD + LY    ++G G    P     +           FG+  V L 
Sbjct: 123 GPTLAAAALRAGIVDDVELYLVPQLVGGGLRALP---DGVRTGLELAGERRFGNGFVFLH 179

Query: 354 YIGK 357
           Y  +
Sbjct: 180 YRRR 183


>gi|254976414|ref|ZP_05272886.1| hypothetical protein CdifQC_13916 [Clostridium difficile QCD-66c26]
 gi|255093799|ref|ZP_05323277.1| hypothetical protein CdifC_14236 [Clostridium difficile CIP 107932]
 gi|255315551|ref|ZP_05357134.1| hypothetical protein CdifQCD-7_14404 [Clostridium difficile
           QCD-76w55]
 gi|255518214|ref|ZP_05385890.1| hypothetical protein CdifQCD-_13943 [Clostridium difficile
           QCD-97b34]
 gi|255651330|ref|ZP_05398232.1| hypothetical protein CdifQCD_14178 [Clostridium difficile
           QCD-37x79]
          Length = 97

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           + + GG  +   F+   L+D   +Y   I++G G   S  + G  + N    +    G  
Sbjct: 30  IWIVGGGDIVKLFMKDNLIDDYYIYILPIILGRG--ISLFKSGIDKTNLNFKKVSNIGEL 87

Query: 350 VCLEYIGK 357
           V LEY  K
Sbjct: 88  VKLEYSKK 95


>gi|306521161|ref|ZP_07407508.1| hypothetical protein CdifQ_16396 [Clostridium difficile QCD-32g58]
          Length = 115

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           + + GG  +   F+   L+D   +Y   I++G G   S  + G  + N    +    G  
Sbjct: 30  IWIVGGGDIVKLFMKDNLIDDYYIYILPIILGRG--ISLFKSGIDKTNLNFKKVSNIGEL 87

Query: 350 VCLEYIGK 357
           V LEY  K
Sbjct: 88  VKLEYSKK 95


>gi|284028221|ref|YP_003378152.1| bifunctional deaminase-reductase domain-containing protein
           [Kribbella flavida DSM 17836]
 gi|283807514|gb|ADB29353.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
           DSM 17836]
          Length = 187

 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 37/132 (28%), Gaps = 21/132 (15%)

Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPV---LALAFRKKNINIIYCDCRDLKKLLTILVG 284
                  +  +     P ++ +   D V     L        +      D + +      
Sbjct: 68  GATPAQIEFARNWRDTPKVVFSSTIDKVDWNTRLVTGDAAAEMTRLKAEDGEPM------ 121

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-KNFMCVRR 343
                +    GA +A + + + LVD   +    +++G G   +P             V  
Sbjct: 122 ----RV---AGATLAGAAVRAGLVDEYEIVTHPVLVGGG---TPFFTALDSWVKLSLVET 171

Query: 344 DYF-GSDVCLEY 354
             F G  V   Y
Sbjct: 172 RTFPGGVVLTRY 183


>gi|73662644|ref|YP_301425.1| dihydrofolate reductase family protein [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|72495159|dbj|BAE18480.1| putative dihydrofolate reductase family [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 185

 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 2/112 (1%)

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           ++   +  V     R  +    +   +D+   +  +  +    + + GG+ +  SFI   
Sbjct: 76  LIHSKNKYVFTNQTRSNHDQTQFIKPKDMYTTVNDIKTQQQKDIWLYGGSELITSFIKHD 135

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           L+D   L    +V+G G      E  + + N   V+ + F S V      K+
Sbjct: 136 LIDEYRLSIHPVVLGTG--KPLFENIHKQLNLSHVQTNTFKSGVVQLIYSKD 185


>gi|300790423|ref|YP_003770714.1| riboflavin biosynthesis protein [Amycolatopsis mediterranei U32]
 gi|299799937|gb|ADJ50312.1| putative riboflavin biosynthesis protein [Amycolatopsis
           mediterranei U32]
          Length = 195

 Score = 43.7 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           G  V  S + + LVD I+L++  +++G G
Sbjct: 135 GGGVLASALQAGLVDEIVLHQVPVLLGGG 163


>gi|229491067|ref|ZP_04384898.1| riboflavin biosynthesis protein RibD domain protein [Rhodococcus
           erythropolis SK121]
 gi|229322048|gb|EEN87838.1| riboflavin biosynthesis protein RibD domain protein [Rhodococcus
           erythropolis SK121]
          Length = 201

 Score = 43.7 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
           GG  VA S   + LVD + L+   + IG G    P     L+
Sbjct: 141 GGPTVAVSAFAAGLVDEVRLFLCPVNIGGGLRALPESRLDLQ 182


>gi|254525362|ref|ZP_05137414.1| cytosine/adenosine deaminase [Prochlorococcus marinus str. MIT
           9202]
 gi|221536786|gb|EEE39239.1| cytosine/adenosine deaminase [Prochlorococcus marinus str. MIT
           9202]
          Length = 171

 Score = 43.7 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 31/92 (33%), Gaps = 15/92 (16%)

Query: 39  GIVIGRGVTAYG----GCPHAEVQALEEAG-----EEARGATAYVTLEPCSHYGRSPPCA 89
           G  IGRGV           HAE+ AL +A            T    LEPC        C+
Sbjct: 53  GRCIGRGVNRRNINKDPLGHAEIMALRQASLIKNDWRFNECTIITNLEPC------TMCS 106

Query: 90  QFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
             +I+  + +V+    D      G  +     
Sbjct: 107 SALIQARMGKVIFGAYDKKRGGLGGSIDLSKH 138


>gi|268608090|ref|ZP_06141818.1| CMP/dCMP deaminase, zinc-binding protein [Ruminococcus flavefaciens
           FD-1]
          Length = 164

 Score = 43.7 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 35/104 (33%), Gaps = 34/104 (32%)

Query: 32  ACLIVKDGIVIGRGV-----------------------TAYGG-----CPHAEVQALEEA 63
             +IVK+  V+  G                            G       HAE  AL   
Sbjct: 35  GAVIVKNDAVVSTGYNGSPRGTENCCDRGECPRMALGLHQGEGYAMCRAVHAEANALLNC 94

Query: 64  -GEEARGATAY---VTLEPCS-HYGR-SPPCAQFIIECGIRRVV 101
             ++  GA  Y   V  E  S H  +  P CA+ II+ GI+ V 
Sbjct: 95  SRDQTVGADLYLTGVNPEDGSVHMAKPCPLCARMIIQAGIKNVY 138


>gi|255535342|ref|YP_003095713.1| Bifunctional deaminase-reductase domain protein [Flavobacteriaceae
           bacterium 3519-10]
 gi|255341538|gb|ACU07651.1| Bifunctional deaminase-reductase domain protein [Flavobacteriaceae
           bacterium 3519-10]
          Length = 177

 Score = 43.7 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 12/114 (10%)

Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
           V ++T  + P       +    I Y    D   L+  L      ++  +GGA V +  + 
Sbjct: 74  VYVITRTEKP-------QVGRTIFYTGKID--DLVKQLKSEKGENIYCDGGAEVINELLK 124

Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-LEYIGK 357
             L+D++I+    +++G G      ++G  E+    +    F   +  L Y  K
Sbjct: 125 HDLIDNLIISVIPVLLGNGTR--LFKDGRPEQILEFIEAKTFEPGLIQLHYERK 176


>gi|239944749|ref|ZP_04696686.1| riboflavin biosynthesis protein RibD [Streptomyces roseosporus NRRL
           15998]
          Length = 199

 Score = 43.7 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 10/109 (9%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGG 295
                APV ++T    P                D  +  L++       R V S+   GG
Sbjct: 85  NPPYHAPVFVLT--HHPRDPQPMDGGTTFHFVTDGIESALRRAREAAGDRDV-SVH--GG 139

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           A   + ++ + L+D + L+     +G G   + L +G    +   V   
Sbjct: 140 ARTVNQYLAAGLIDELRLHIVPFTLGAG---TRLFDGVPSLDLELVETR 185


>gi|71026495|ref|XP_762917.1| cytidine deaminase [Theileria parva strain Muguga]
 gi|68349869|gb|EAN30634.1| cytidine deaminase, putative [Theileria parva]
          Length = 153

 Score = 43.7 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 41/132 (31%), Gaps = 31/132 (23%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTA----YGGCPHAEVQALE 61
             FM  AL  ++    L     +VAC+IV      V+     A    Y    H E++A+ 
Sbjct: 10  ENFMKLALEEAKKA--LDKEEVAVACIIVSKATREVVASSSNATNLTYNSTWHCELEAIN 67

Query: 62  -----------------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                            +  E   G   +VT EPC        C   +   G+  V    
Sbjct: 68  KLIDMEPNGYKSQQDSGKLREFCSGFVLFVTCEPCIM------CTTALQLIGLTEVYYGC 121

Query: 105 DDPDVRVSGRGL 116
            +      G  L
Sbjct: 122 KNEKFGGCGSVL 133


>gi|315160626|gb|EFU04643.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX0645]
 gi|315579472|gb|EFU91663.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX0630]
          Length = 196

 Score = 43.7 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 33/85 (38%)

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
           T  L+P +   E+    +  +  + +         D   L+  L       + + GG  V
Sbjct: 77  TQELSPDVYFYEDKHSYIITSHSEPSTASRTFTKEDPVTLIRRLKEEDGAGIWIVGGPKV 136

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323
               + + L+D+ IL    + +GEG
Sbjct: 137 VQPLLAADLIDTFILTTIPLFLGEG 161


>gi|209544158|ref|YP_002276387.1| CMP/dCMP deaminase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531835|gb|ACI51772.1| CMP/dCMP deaminase zinc-binding [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 178

 Score = 43.7 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 16/102 (15%)

Query: 30  SVACLIV-KDGIVIGRGVTA-YGG---CPHAEVQALEEA-----GEEARGATAYVTLEPC 79
            V  +++  DG ++ R       G     HAE+  +  A          G T  VTLEPC
Sbjct: 32  PVGAVLLGPDGTILARAGNQVEAGHDAAAHAEMLVMRAAARILGSPRLTGCTLVVTLEPC 91

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
                 P CA   +   + R+V    DP       G + L++
Sbjct: 92  ------PMCAAASVHFRVGRIVFGAYDPKGGGVEHGPRLLAR 127


>gi|297199965|ref|ZP_06917362.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sviceus ATCC 29083]
 gi|297147543|gb|EDY54471.2| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sviceus ATCC 29083]
          Length = 226

 Score = 43.7 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 37/109 (33%), Gaps = 10/109 (9%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGG 295
                 PV ++T    P L    +         D  D  L +       R V    + GG
Sbjct: 112 DPPFRTPVFVLTHRPRPTLVK--QGGTTFTFVTDGIDSALAQAREAAGDRNVD---IAGG 166

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           A     ++   L+D + L+    ++G+G     L EG        VR +
Sbjct: 167 ARTVRQYLREGLIDELQLHVVPALLGDGLR---LFEGVGAGRLEQVRAE 212


>gi|149511776|ref|XP_001520371.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus]
          Length = 186

 Score = 43.7 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 8/82 (9%)

Query: 47  TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           T Y    HAE+ A+  +   + +G + YV L PC+       CA+ II+ GI+ V+   D
Sbjct: 85  TKYPYVCHAELNAIMNKNSTDVKGCSIYVALFPCNE------CAKLIIQAGIKDVIFMSD 138

Query: 106 DPDVRVSGRGLQWLSQ-KGIIV 126
                      + L    GI  
Sbjct: 139 KYHDSEEATAARRLFDLAGIEY 160


>gi|294643821|ref|ZP_06721616.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|292640826|gb|EFF59049.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
          Length = 103

 Score = 43.7 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
           T +LV GG  +  S I + L+DS+ +Y   +++G+G          L   +         
Sbjct: 33  TDILVVGGGKLLTSLIKAGLLDSLTIYTVPVMVGKG---IGFIGETLGSEWKLSESRVLD 89

Query: 348 SDVC 351
           + V 
Sbjct: 90  NGVV 93


>gi|284044525|ref|YP_003394865.1| bifunctional deaminase-reductase domain protein [Conexibacter
           woesei DSM 14684]
 gi|283948746|gb|ADB51490.1| bifunctional deaminase-reductase domain protein [Conexibacter
           woesei DSM 14684]
          Length = 188

 Score = 43.7 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 32/98 (32%), Gaps = 3/98 (3%)

Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT-SLLVEGGAAVAHSFINSRLV 308
           E    V +    K     +     DL   +  L  R    ++LV GG   A S     LV
Sbjct: 77  EKPKAVFSHTLEKAEWGPVEIFGGDLGAEIAELKARDDEGTILVHGGPDFATSLTRLGLV 136

Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
           D   L    I IG G   SP  +         V  + F
Sbjct: 137 DEYQLTTVPIAIGAG--HSPFADLEEHLKLDVVAEERF 172


>gi|163733416|ref|ZP_02140859.1| cytidine and deoxycytidylate deaminase family protein [Roseobacter
           litoralis Och 149]
 gi|161393204|gb|EDQ17530.1| cytidine and deoxycytidylate deaminase family protein [Roseobacter
           litoralis Och 149]
          Length = 149

 Score = 43.7 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 43/128 (33%), Gaps = 21/128 (16%)

Query: 30  SVACLIVK-DGIVIGRGVTAYGG----CPHAEVQALEEA-----GEEARGATAYVTLEPC 79
            V  ++V  DG++I               HAE+ A+  A      E       YVTLEPC
Sbjct: 24  PVGAVVVDPDGLIIAAAGNQTRADLDPTAHAEMLAIRRACAVLGTERLIDHALYVTLEPC 83

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEG 134
           +        A  I    I R+     DP      +G +            + D +  +E 
Sbjct: 84  AMC------AAAISAARISRLYYGAGDPKSGGVAQGARVFSHPQCHHAPEVFDGIAAAES 137

Query: 135 KIFLHAYL 142
           +  L  + 
Sbjct: 138 EAMLKGFF 145


>gi|209548316|ref|YP_002280233.1| bifunctional deaminase-reductase domain protein [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209534072|gb|ACI54007.1| bifunctional deaminase-reductase domain protein [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 176

 Score = 43.7 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCL 352
           GG  +A    +  L+D   LY   +V+G G    P   G        V  D  G D V L
Sbjct: 116 GGPELAGGLTDLGLIDEYRLYFHPVVLGHGK---PFFTG-PRPPLRLVASDLIGGDAVRL 171

Query: 353 EYIG 356
            Y+ 
Sbjct: 172 TYVP 175


>gi|157364177|ref|YP_001470944.1| CMP/dCMP deaminase zinc-binding [Thermotoga lettingae TMO]
 gi|157314781|gb|ABV33880.1| CMP/dCMP deaminase zinc-binding [Thermotoga lettingae TMO]
          Length = 209

 Score = 43.7 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 35/95 (36%), Gaps = 24/95 (25%)

Query: 30  SVACLIVKD-GIVIGRGVTAYG-----GCP-------HAEVQALEEAGE-----EARGAT 71
            + C+IV   G +I +G  A       G P       HAE+ AL          E     
Sbjct: 21  PIGCVIVNGSGNIISKGRNAIHESNFSGYPVFGNSIAHAELNALVSMKRIPDNMEISDYV 80

Query: 72  AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
            Y ++EPC        C   I   GIR VV  + D
Sbjct: 81  IYTSMEPC------VMCFGAIYMSGIRNVVYGMKD 109


>gi|239991214|ref|ZP_04711878.1| riboflavin biosynthesis protein RibD [Streptomyces roseosporus NRRL
           11379]
 gi|291448211|ref|ZP_06587601.1| riboflavin biosynthesis protein RibD [Streptomyces roseosporus NRRL
           15998]
 gi|291351158|gb|EFE78062.1| riboflavin biosynthesis protein RibD [Streptomyces roseosporus NRRL
           15998]
          Length = 206

 Score = 43.7 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 10/109 (9%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGG 295
                APV ++T    P                D  +  L++       R V S+   GG
Sbjct: 92  NPPYHAPVFVLT--HHPRDPQPMDGGTTFHFVTDGIESALRRAREAAGDRDV-SVH--GG 146

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           A   + ++ + L+D + L+     +G G   + L +G    +   V   
Sbjct: 147 ARTVNQYLAAGLIDELRLHIVPFTLGAG---TRLFDGVPSLDLELVETR 192


>gi|326772679|ref|ZP_08231963.1| cytidine and deoxycytidylate deaminase family protein [Actinomyces
           viscosus C505]
 gi|326637311|gb|EGE38213.1| cytidine and deoxycytidylate deaminase family protein [Actinomyces
           viscosus C505]
          Length = 196

 Score = 43.7 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 44/121 (36%), Gaps = 18/121 (14%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVI-----GRGVTAYGGCPHAEVQALEEAGE 65
           M  AL  +R   G     P V  +++    V+           +    HAE++AL  AG 
Sbjct: 54  MLRALELAR-AAGEAGEVP-VGAVVLSPEGVVLAEAANAREAEHDPTAHAEIRALRAAGA 111

Query: 66  -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
                   G T  VTLEPC        CA  I+   + R+V+   +P     G     + 
Sbjct: 112 ALGDSHLDGCTLVVTLEPC------TMCAGAIVLARVARLVLGAWEPRTGACGSVRDVVR 165

Query: 121 Q 121
            
Sbjct: 166 D 166


>gi|297190424|ref|ZP_06907822.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197720447|gb|EDY64355.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 187

 Score = 43.7 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 56/178 (31%), Gaps = 29/178 (16%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFIS---KNQVHLLRAQSDAILVGIGTVLADDP 205
                L++  + D  +         +T   +      +  L    D +++G        P
Sbjct: 1   MRTFKLQVQTTVDGYMAGPNGEMDWMTFPWTDDINAYLDALTEPVDCVVLGRKLAEGFIP 60

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
                  G  + S     +D         K++    ++  +  +  D+ V+A        
Sbjct: 61  TWAAGPEGEDQAS-----IDKMNNTP---KVV----VSNTLTESPWDNAVVA-------- 100

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
                   DL  ++  L  +    ++  GG  +  S I   L+D + L  +   IG G
Sbjct: 101 ------GGDLAAIVDKLKEQPGGDIIAYGGGTLVSSLIAEGLLDELHLLVNPTAIGAG 152


>gi|78063661|ref|YP_373569.1| cytidine/deoxycytidylate deaminase [Burkholderia sp. 383]
 gi|77971546|gb|ABB12925.1| Cytidine/deoxycytidylate deaminase [Burkholderia sp. 383]
          Length = 155

 Score = 43.7 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 15/88 (17%)

Query: 30  SVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
             A +IV+DG ++               HAE+ A+ +A      E       Y+   PC 
Sbjct: 21  PFATVIVRDGEIVAESPNLVAQTSDPTAHAEILAVRDACRKLGTEHLTDCEIYILASPC- 79

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                P C   +  C  +RVV      D
Sbjct: 80  -----PMCLGSLYYCSPKRVVYITTRED 102


>gi|332885816|gb|EGK06062.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Dysgonomonas mossii DSM 22836]
          Length = 176

 Score = 43.7 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 25/47 (53%)

Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           + ++ L  +    + + GG  +   F+++ L+D II+    +++G G
Sbjct: 97  ETVSELKKKQDKDIWLVGGGEIISLFLSNNLIDEIIITTVPVMLGNG 143


>gi|294806932|ref|ZP_06765756.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|294445857|gb|EFG14500.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 172

 Score = 43.7 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
           T +LV GG  +  S I + L+DS+ +Y   +++G+G          L   +         
Sbjct: 102 TDILVVGGGKLLTSLIKAGLLDSLTIYTVPVMVGKG---IGFIGETLGSEWKLSESRVLD 158

Query: 348 SDVC 351
           + V 
Sbjct: 159 NGVV 162


>gi|255280709|ref|ZP_05345264.1| RibD domain protein [Bryantella formatexigens DSM 14469]
 gi|255268646|gb|EET61851.1| RibD domain protein [Bryantella formatexigens DSM 14469]
          Length = 132

 Score = 43.7 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 12/82 (14%)

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRS---------QIVIGEGGIPSPLEEGYLEK 336
           G+ +L++ GG  +  SFI + + D + +  +           +    G  +P        
Sbjct: 52  GIETLMLGGGGVLNWSFIQAGMCDEVSVVIAAAADGSTNTPALFSAKGGFAPEMPVCFSL 111

Query: 337 NFMCVRRDYFGSDVCLEYIGKN 358
               VR    G  V L Y+ K 
Sbjct: 112 QSAEVRN---GGSVWLRYLVKE 130


>gi|218675147|ref|ZP_03524816.1| putative riboflavin biosynthesis reductase protein [Rhizobium etli
           GR56]
          Length = 120

 Score = 43.7 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           DL+  +  L       + V  G  +A S  +  L+D  ++Y   +V+G G    P   G 
Sbjct: 41  DLEGAIRKLKAERDGEIEV-AGPDLARSLTDLGLIDEYVIYLHPVVLGHGR---PYFAG- 95

Query: 334 LEKNFMCVRRDYFGSDVC-LEYIG 356
                  +  D  G DV  L Y+ 
Sbjct: 96  PRPPLRLMANDRIGEDVIRLVYVP 119


>gi|311743479|ref|ZP_07717285.1| riboflavin biosynthesis protein RibD domain protein [Aeromicrobium
           marinum DSM 15272]
 gi|311312609|gb|EFQ82520.1| riboflavin biosynthesis protein RibD domain protein [Aeromicrobium
           marinum DSM 15272]
          Length = 193

 Score = 43.7 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 11/102 (10%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLK-KLLTILVGRGVTSLLVEGGAAVAHSF 302
           P  ++T       A      ++     D  +L   +L    GR    L V GG  +A   
Sbjct: 75  PCWVLTHRS----ADPLPGADVRFAAQDVTELHPAMLASAAGRD---LWVVGGGDIAGRL 127

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
             + L+D +++  + + +G G   +PL    ++       R+
Sbjct: 128 AVAGLLDEVVVSIAPVTLGSG---APLLPHRVDLRLEDTGRN 166


>gi|327439833|dbj|BAK16198.1| dihydrofolate reductase [Solibacillus silvestris StLB046]
          Length = 189

 Score = 43.7 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)

Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
           +V   +  V +          I+ +  ++++ +  L  +    + + GGA++  +FIN R
Sbjct: 79  LVHSKEKYVFSRTQNGTGHEAIFIN-DNIREEVIKLKNKPGKDIWLYGGASLITTFINLR 137

Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEK-NFMCVRRDYFGS---DVCLEYIG 356
           L+D   L    +V+GEG    PL     E+ N   V    F S    +  +Y G
Sbjct: 138 LIDEFRLSIHPVVLGEGK---PLFIDVRERLNLKVVNTRTFSSGVVQIVYQYEG 188


>gi|70989807|ref|XP_749753.1| deoxycytidylate deaminase [Aspergillus fumigatus Af293]
 gi|66847384|gb|EAL87715.1| deoxycytidylate deaminase, putative [Aspergillus fumigatus Af293]
 gi|159129162|gb|EDP54276.1| deoxycytidylate deaminase, putative [Aspergillus fumigatus A1163]
          Length = 370

 Score = 43.7 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 48/179 (26%), Gaps = 63/179 (35%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-- 53
           ++D  FM  A   +            V C++V++  VI  G             GGC   
Sbjct: 189 NWDLYFMQLA-SLAAQRSNCMKR--RVGCVLVRERRVISTGYNGTPRHLTNCNEGGCMKP 245

Query: 54  -----------------------------------------HAEVQALEEAGEE--ARGA 70
                                                    HAE  AL EAG E    G+
Sbjct: 246 PESLQLSLILSCCSKRDSHRLGPRCNRGEGGGVGLSTCLCLHAEENALLEAGRERIREGS 305

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
             Y    PC        C   I + GI  VV        +    GL +L     I   +
Sbjct: 306 ILYCDTCPCL------TCTVKIAQVGISEVVYSQGYNMDQEPRNGLIYLQNSQTISSDL 358


>gi|189913159|ref|YP_001965047.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|189913496|ref|YP_001964724.1| Putative dihydrofolate reductase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|167777835|gb|ABZ96134.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167781564|gb|ABZ99860.1| Putative dihydrofolate reductase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 178

 Score = 43.7 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 45/80 (56%), Gaps = 7/80 (8%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           PVI+V++N +      ++ ++ + I    R L++L+  L  +G  ++ V+GG  +  S +
Sbjct: 72  PVIVVSKNPN------YQIESKHQISIFTRPLRELVPFLETKGYQNVYVDGG-KLIQSIL 124

Query: 304 NSRLVDSIILYRSQIVIGEG 323
              L+D+I + +  I++G G
Sbjct: 125 MESLLDTITITQIPILLGSG 144


>gi|154150170|ref|YP_001403788.1| CMP/dCMP deaminase, zinc-binding [Candidatus Methanoregula boonei
          6A8]
 gi|153998722|gb|ABS55145.1| CMP/dCMP deaminase, zinc-binding [Methanoregula boonei 6A8]
          Length = 162

 Score = 43.7 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 30/90 (33%)

Query: 15 LRFSRWHVGL-TSTNPSVACLIVKD-GIVIGRGVT------------------------- 47
          L  ++      T    +   +IV +   ++  G T                         
Sbjct: 10 LDLAQRCANQGTCLRRNFGAIIVDEYNTIVSTGYTGAPRKQMDCTELNRCWRKDHNIPSG 69

Query: 48 ---AYGGCPHAEVQALEEAGEEARGATAYV 74
                   HAE+ A+ +AG+ ARG T Y+
Sbjct: 70 SNYERCRSVHAEMNAMLQAGKLARGCTLYL 99


>gi|291303176|ref|YP_003514454.1| bifunctional deaminase-reductase domain-containing protein
           [Stackebrandtia nassauensis DSM 44728]
 gi|290572396|gb|ADD45361.1| bifunctional deaminase-reductase domain protein [Stackebrandtia
           nassauensis DSM 44728]
          Length = 201

 Score = 43.7 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 11/122 (9%)

Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
           S++       P ++V+++  P     +      +   +  D    LT    RG     V 
Sbjct: 83  SRVFN---ALPKVVVSDSYVPSADNPWYDSTTVVKRAEVADW---LTAERQRGSGD-FVT 135

Query: 294 GGAAVAHS-FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            G+    +  +   LVD + L      +G G   +P+    +E   + +RR     +V L
Sbjct: 136 FGSRTMWNGLLAQELVDELHLMVGPKALGGG---TPVFAAPVELRLLGIRRFDGSDNVVL 192

Query: 353 EY 354
            Y
Sbjct: 193 RY 194


>gi|325003196|ref|ZP_08124308.1| deaminase-reductase domain-containing protein [Pseudonocardia sp.
           P1]
          Length = 183

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           GA VA   +   LVD I++Y   +++G+G   S    G +  +   V     G    L +
Sbjct: 119 GADVASQCLRRGLVDEILVYVLPVLLGDGVRFSTPGLGRI--DLEPVGNRQSGPVTLLRF 176

Query: 355 IGK 357
             +
Sbjct: 177 RVR 179


>gi|123968475|ref|YP_001009333.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
           marinus str. AS9601]
 gi|123198585|gb|ABM70226.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
           marinus str. AS9601]
          Length = 145

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 15/92 (16%)

Query: 39  GIVIGRGVTAYG----GCPHAEVQALEEAG-----EEARGATAYVTLEPCSHYGRSPPCA 89
           G  IGRGV +         HAE+ AL +A            T    LEPC        C+
Sbjct: 27  GRCIGRGVNSRNINKDPLGHAEIMALRQASLIKNDWRFNECTIITNLEPC------TMCS 80

Query: 90  QFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
             +I+  + +V+    D      G  +     
Sbjct: 81  SALIQARMGKVIFGAYDKKRGGLGGSIDLSKH 112


>gi|160872356|ref|ZP_02062488.1| cytosine deaminase (Cytosine aminohydrolase) [Rickettsiella grylli]
 gi|159121155|gb|EDP46493.1| cytosine deaminase (Cytosine aminohydrolase) [Rickettsiella grylli]
          Length = 169

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 56/151 (37%), Gaps = 21/151 (13%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEE- 62
             F+  A + +   +GL      +  ++V +  V  +G            H E   LE  
Sbjct: 9   REFLDLAYQEAL--LGLKEGGIPIGSILVVENKVRAKGRNKRIQEHSMIKHGETDCLENT 66

Query: 63  ----AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                 E+ + AT Y TL PCS       CA  I+   I RV+V  +    +       W
Sbjct: 67  RRKVLPEDLQRATLYTTLSPCSM------CAGAILLHKIPRVIVGENKTFEQSE----LW 116

Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           L Q    V  + + +    + +++ + ++  
Sbjct: 117 LKQNQTEVIVVNQEKCIAMMLSFIRKNLKLW 147


>gi|15805630|ref|NP_294326.1| cytidine/deoxycytidylate deaminase/NUDIX/methyltransferase
           domain-containing protein [Deinococcus radiodurans R1]
 gi|6458301|gb|AAF10182.1|AE001918_7 cytidine/deoxycytidylate deaminase/nudix/methyltransferase domains
           protein [Deinococcus radiodurans R1]
          Length = 548

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 43/118 (36%), Gaps = 26/118 (22%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------------HAEVQA 59
           A+  +     L  + P  AC++   G ++GRG     G P              HAE+ A
Sbjct: 12  AMSEAWNG-FLYGSYPIGACIVDAQGNIVGRGRN-RLGEPRRAHAGVIGGHDLAHAEINA 69

Query: 60  LEEAGEEARGA----TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           L    +  R      T   T+EPC      P CA  +   GIR V     DP    + 
Sbjct: 70  LLSVPDLRRPECLSWTVLTTVEPC------PQCAGAVAMSGIRGVSYAAPDPWGGCAR 121


>gi|333028380|ref|ZP_08456444.1| hypothetical protein STTU_5884 [Streptomyces sp. Tu6071]
 gi|332748232|gb|EGJ78673.1| hypothetical protein STTU_5884 [Streptomyces sp. Tu6071]
          Length = 188

 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-KNFMCVRRDYF-GSDVC 351
           GGA +A + + + L+D  ++    +++G G   +P         N   V    F G  V 
Sbjct: 125 GGATLAGAAMRAGLIDEYVIAAHPVLVGGG---TPFFTALDSWVNLHLVETRTFPGGVVL 181

Query: 352 LEY 354
             Y
Sbjct: 182 SRY 184


>gi|262381562|ref|ZP_06074700.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Bacteroides sp. 2_1_33B]
 gi|262296739|gb|EEY84669.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Bacteroides sp. 2_1_33B]
          Length = 172

 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 23/36 (63%)

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           T +LV GG  +  S I + L+DS+ +Y   +++G+G
Sbjct: 102 TDILVVGGGRLLTSLIKAGLLDSLTIYTVPVMVGKG 137


>gi|114569170|ref|YP_755850.1| tRNA-adenosine deaminase [Maricaulis maris MCS10]
 gi|114339632|gb|ABI64912.1| tRNA-adenosine deaminase [Maricaulis maris MCS10]
          Length = 174

 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 44/116 (37%), Gaps = 19/116 (16%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYGG----CPHAEV 57
           +  D RFM AALR ++           +  +IV      ++ +             HAE+
Sbjct: 11  NPRDTRFMQAALRLAQAAAEAGEA--PIGAIIVDPATDSIVAQAHNRPIADHDPTAHAEI 68

Query: 58  QALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
            AL EA  +       G   YVTLEPC+       CA  I    I R+V    D  
Sbjct: 69  LALREAAAKLGNYRLTGLELYVTLEPCAM------CAGAISHARIGRLVFGASDEK 118


>gi|46205243|ref|ZP_00209765.1| COG0590: Cytosine/adenosine deaminases [Magnetospirillum
          magnetotacticum MS-1]
          Length = 141

 Score = 43.3 bits (101), Expect = 0.051,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 32 ACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
            +IV+DG VI R             HAE+ AL  A +     +      Y +  PC   
Sbjct: 15 GAVIVRDGEVIARAANRIHRTNDPSDHAEMVALRAASQRLGRPKLDDCIVYASGRPC--- 71

Query: 83 GRSPPCAQFIIECGIRR 99
             P C   +   G+++
Sbjct: 72 ---PMCHAAMRLAGVKQ 85


>gi|327179698|gb|AEA30246.1| putative cytosine/adenosine deaminase [Streptomyces sp. Acta 2897]
          Length = 159

 Score = 43.3 bits (101), Expect = 0.051,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 17/105 (16%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
           +   A+R SR HV      P    ++V  G ++G G            HAEV AL EA  
Sbjct: 11  YAHEAVRISREHVAQ-GGIPFSG-VVVGSGRILGTGFNRVREDNDPTAHAEVVALREATT 68

Query: 66  E-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           +       GAT   + EPC+       C       GI  +V   D
Sbjct: 69  KYGIHAVAGATLIASGEPCA------LCYLAARYAGIGHIVHAAD 107


>gi|167525958|ref|XP_001747313.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774148|gb|EDQ87780.1| predicted protein [Monosiga brevicollis MX1]
          Length = 222

 Score = 43.3 bits (101), Expect = 0.051,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 48/162 (29%), Gaps = 34/162 (20%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV----------------- 46
            +D  FM+ A   ++        N  +   IV     ++G G                  
Sbjct: 27  PWDDYFMAVAFLSAKRSK---DPNTQIGSCIVNAANKIVGIGYNGMPRGCDDDALPWARE 83

Query: 47  ------TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T Y    +AE+ A L +     RG   Y    P S        A+ II+ GI  
Sbjct: 84  GPSVLDTKYPYVCNAEMNAILNKNSASLRGCRMYTAFFPNSE------SAKLIIQAGITE 137

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
           V+  VD    R   +  + L     +  R            +
Sbjct: 138 VLYTVDRYAERPEYQAARRLFALAKVHCRQHTPLCSEITLDF 179


>gi|126739257|ref|ZP_01754951.1| cytidine and deoxycytidylate deaminase family protein [Roseobacter
           sp. SK209-2-6]
 gi|126719874|gb|EBA16582.1| cytidine and deoxycytidylate deaminase family protein [Roseobacter
           sp. SK209-2-6]
          Length = 154

 Score = 43.3 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 39/122 (31%), Gaps = 18/122 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEA- 63
           +M+ AL  +R           V  +++   G V+ R             HAE+  L E  
Sbjct: 11  YMNLALDEARAAARR--GEVPVGAVLINSKGDVVARAGNRTRELNDPTAHAEILVLREGC 68

Query: 64  ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                E   G   YVTLEPC+    +           I R+     DP       G    
Sbjct: 69  KAIGSERLMGYDLYVTLEPCAMCAAAL------AAARISRIYYGASDPKSGGVAHGACVF 122

Query: 120 SQ 121
           S 
Sbjct: 123 SH 124


>gi|256824403|ref|YP_003148363.1| dihydrofolate reductase [Kytococcus sedentarius DSM 20547]
 gi|256687796|gb|ACV05598.1| dihydrofolate reductase [Kytococcus sedentarius DSM 20547]
          Length = 196

 Score = 43.3 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            R L      L   G   + V+GG  V   F+ + L+D I +  + ++IG G
Sbjct: 103 ARSLDNAQRTLAASGARQVYVDGG-MVVQEFLRADLIDEISIGWAPVLIGSG 153


>gi|289583345|ref|YP_003481755.1| CMP/dCMP deaminase zinc-binding protein [Natrialba magadii ATCC
           43099]
 gi|289532843|gb|ADD07193.1| CMP/dCMP deaminase zinc-binding protein [Natrialba magadii ATCC
           43099]
          Length = 156

 Score = 43.3 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 46/134 (34%), Gaps = 18/134 (13%)

Query: 1   MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHA 55
           M  ++FD    M  A   +R  V           ++V+D  V+       VT      H 
Sbjct: 1   MDPAAFDHEEHMHRAFDLAREAVARGDR--PFGSVLVRDNTVVDSASNRVVTEDDIRRHP 58

Query: 56  EVQALEEA--GEEARG---ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+     A  G +  G      Y + EPC      P CA  ++  G+ R+V  V   ++ 
Sbjct: 59  ELHLAYRAVRGFDPAGRAELVMYTSTEPC------PMCAGGLVSAGLDRIVYSVGGDEIG 112

Query: 111 VSGRGLQWLSQKGI 124
                   +    I
Sbjct: 113 EFTGDSPAVRAATI 126


>gi|300773271|ref|ZP_07083140.1| riboflavin biosynthesis protein RibD domain protein
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|300759442|gb|EFK56269.1| riboflavin biosynthesis protein RibD domain protein
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 187

 Score = 43.3 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 64/213 (30%), Gaps = 33/213 (15%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
                I L +AV+ D  I                +            + GI T+      
Sbjct: 6   MNMKKIILDLAVTLDGFIEGPNGEVDWCIMDEDMDFA--------GFMSGIDTIFYGR-- 55

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
                +    + P            ++ ++          + +          F      
Sbjct: 56  --VSYDAWGNYQP------ETSADPVEKQLWNDIHSKQKFVFSSQTRADEHATFIPS--- 104

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
                  D+ + ++ +  +G   + + GGA++  SFI   L+D   +    + +G G   
Sbjct: 105 -------DVAQRVSEIKAQGGKDIWLYGGASLIRSFIQLGLIDIYRISVHPVALGSGK-- 155

Query: 327 SPLEEGYLEK-NFMCVRRDYFGSDVC-LEYIGK 357
            PL E   ++     +R + F S V  L Y  K
Sbjct: 156 -PLFENLKDRVQLNLIRTNTFKSGVVQLIYEQK 187


>gi|183219547|ref|YP_001837543.1| hypothetical protein LEPBI_I0120 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189909690|ref|YP_001961245.1| dihydrofolate reductase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167774366|gb|ABZ92667.1| Dihydrofolate reductase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167777969|gb|ABZ96267.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 187

 Score = 43.3 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 2/67 (2%)

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
           + L   G   L V G   ++ SF+ + L D   L  + + +G+G       EG   +   
Sbjct: 108 SKLKQEGNGDLYVFGSGILSASFMKAGLFDEYRLCIAPVFLGKGRR--LFLEGIPNQELT 165

Query: 340 CVRRDYF 346
            +     
Sbjct: 166 LIESKPL 172


>gi|317154506|ref|YP_004122554.1| CMP/dCMP deaminase zinc-binding protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944757|gb|ADU63808.1| CMP/dCMP deaminase zinc-binding protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 152

 Score = 43.3 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 47/155 (30%), Gaps = 44/155 (28%)

Query: 1   MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------- 46
           MP    +   FM  A   ++     T T  +V  + V+   ++  G              
Sbjct: 1   MPDRLPWPEYFMRIAHLVAQRS---TCTRRAVGAIAVRGKRILATGYNGVPTNIAHCEEV 57

Query: 47  --------------TAYGGCPHAEVQALEEAGE---EARGATAYVTLEPCSHYGRSPPCA 89
                                HAE   + +A     +  G   Y T +PC        C 
Sbjct: 58  GCIRDKLKIPSGERHELCRGLHAEQNVIIQAATHHLDLTGCDIYCTTKPCI------LCT 111

Query: 90  QFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           + +I C +R +    + PD        Q L + G+
Sbjct: 112 KMLINCEVRNIYFSQNYPDELSE----QMLEEAGV 142


>gi|269796085|ref|YP_003315540.1| dihydrofolate reductase [Sanguibacter keddieii DSM 10542]
 gi|269098270|gb|ACZ22706.1| dihydrofolate reductase [Sanguibacter keddieii DSM 10542]
          Length = 183

 Score = 43.3 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           G  +A   + + +VD +  Y S + +G GG+P    EG      +     + G  + L Y
Sbjct: 122 GPTLAAHALRAGIVDEVHPYVSPVSVG-GGLP-FWPEGLRLDLDLLDEHRFRGGALWLRY 179


>gi|260469655|ref|ZP_05813818.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
           opportunistum WSM2075]
 gi|259028567|gb|EEW29880.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
           opportunistum WSM2075]
          Length = 195

 Score = 43.3 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GGA  A + I + LVD   L+ +  V+G G
Sbjct: 133 GGAGFASALIAAGLVDEFQLFVNPAVLGAG 162


>gi|254466312|ref|ZP_05079723.1| cytosine deaminase [Rhodobacterales bacterium Y4I]
 gi|206687220|gb|EDZ47702.1| cytosine deaminase [Rhodobacterales bacterium Y4I]
          Length = 156

 Score = 43.3 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 38/121 (31%), Gaps = 16/121 (13%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA-- 63
            M  AL             P  A LI  DG V                HAE+  + EA  
Sbjct: 6   HMDKALEQ-ARAAAARGEVPVGAALIAPDGQVAALAGNRTRELNDPTAHAEILTIREACA 64

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
               E   G   YVTLEPC+       CA  I    IRRV     DP       G    S
Sbjct: 65  RLGSERLTGYDLYVTLEPCAM------CAAAIAAARIRRVYYGAADPKSGGVAHGACVFS 118

Query: 121 Q 121
            
Sbjct: 119 H 119


>gi|111222959|ref|YP_713753.1| hypothetical protein FRAAL3547 [Frankia alni ACN14a]
 gi|111150491|emb|CAJ62190.1| conserved hypothetical protein; putative NAD(P)-binding
           Rossmann-fold and reductase domains [Frankia alni
           ACN14a]
          Length = 312

 Score = 43.3 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-KNFMCVRRDYF-GSDVC 351
           GGA +A + + + L+D   +    +++G G   +P         N   V    F G  V 
Sbjct: 249 GGATLAGAAMRAGLIDEYAIVAHPVLVGSG---TPFFTALDSWVNLNLVETRTFPGGVVL 305

Query: 352 LEY 354
             Y
Sbjct: 306 TRY 308


>gi|332652950|ref|ZP_08418695.1| riboflavin biosynthesis protein RibD C- domain protein
           [Ruminococcaceae bacterium D16]
 gi|332518096|gb|EGJ47699.1| riboflavin biosynthesis protein RibD C- domain protein
           [Ruminococcaceae bacterium D16]
          Length = 178

 Score = 43.3 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%)

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
             +K+++  I+    DL  L+         ++ + GGA+VA   +    +D + L     
Sbjct: 82  HRQKEDLENIFFWNGDLTDLVDKQKESHEGNVWICGGASVAGQLLKEGRIDKLWLSIIPT 141

Query: 319 VIGEG 323
           V+G+G
Sbjct: 142 VLGKG 146


>gi|169627158|ref|YP_001700807.1| cytidine/deoxycytidylate deaminase [Mycobacterium abscessus ATCC
           19977]
 gi|169239125|emb|CAM60153.1| Probable cytidine/deoxycytidylate deaminase [Mycobacterium
           abscessus]
          Length = 166

 Score = 43.3 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 17/102 (16%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA-- 63
           F    +  +R +V         A +IVKDG V+               HAE+ A+ EA  
Sbjct: 3   FAQRTIDLARRNVEEGGR--PFATIIVKDGAVLAESPNRVAQTNDPTAHAEILAIREACT 60

Query: 64  ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
               E   G+T ++   PC      P C   +  C    VV 
Sbjct: 61  RLGTEHLAGSTIFILALPC------PMCLGALYYCSPDEVVF 96


>gi|295681434|ref|YP_003610008.1| bifunctional deaminase-reductase domain protein [Burkholderia sp.
           CCGE1002]
 gi|295441329|gb|ADG20497.1| bifunctional deaminase-reductase domain protein [Burkholderia sp.
           CCGE1002]
          Length = 220

 Score = 43.3 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 12/62 (19%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           GG      ++   L+D + +  + +++G G           E  F  V     G + C+E
Sbjct: 153 GGPETIRQYLREGLIDELHVAIAPVLLGRG-----------ESLFEGVDLRALGYE-CVE 200

Query: 354 YI 355
           ++
Sbjct: 201 FV 202


>gi|254520799|ref|ZP_05132855.1| CMP/dCMP deaminase [Clostridium sp. 7_2_43FAA]
 gi|226914548|gb|EEH99749.1| CMP/dCMP deaminase [Clostridium sp. 7_2_43FAA]
          Length = 147

 Score = 43.3 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 39/133 (29%), Gaps = 47/133 (35%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIV---------------IGRGVTAYG---- 50
           +M  A+  ++                     +               I            
Sbjct: 3   YMDLAINEAKNAY-----------------NIGEVPVGVVVVKDGEVIASQHNLKEKLKL 45

Query: 51  GCPHAEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
              HAE+ A+EEA          G   YVTLEPC      P CA  I +  I R+ +   
Sbjct: 46  TTAHAEILAIEEACKKLNNWRLSGCEMYVTLEPC------PMCAAAIAQSRISRLFIGTF 99

Query: 106 DPDVRVSGRGLQW 118
           + D+   G  +  
Sbjct: 100 NKDMGACGSTINL 112


>gi|328769268|gb|EGF79312.1| hypothetical protein BATDEDRAFT_35458 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 779

 Score = 43.3 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 63/195 (32%), Gaps = 44/195 (22%)

Query: 188 AQSDAILVGIGTVLA----------DDP---ELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           A +DA+L+    +            DD     L     G  +  P+++++       LD 
Sbjct: 86  AHADAVLITGEILRKEKEAGCIVQFDDLIRYRLNV--LGKLDAQPIQVVVSSMCDFELDR 143

Query: 235 KII------KTALLAPVIIVTENDDPVLALAFR--------KKNINIIYCDC-------- 272
            +         A L   II T      L    R        + N+ ++  D         
Sbjct: 144 PLFMGSGNQDGAKLQVWIITTALGAASLENRLRPFRESGKLESNVTVMIGDTLHTTIKPR 203

Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-E 331
            DL  +  +L  +GV  L V  G +V    I+  L++   L  +      G +  P +  
Sbjct: 204 VDLIWVFKLLRAKGVEYLDVSAGGSVIRKCIDLELLNETRLTIA------GHVAGPFDMS 257

Query: 332 GYLEKNFMCVRRDYF 346
           G        +  D F
Sbjct: 258 GNKRPELFPIDSDRF 272


>gi|229489329|ref|ZP_04383192.1| riboflavin biosynthesis protein RibD domain protein [Rhodococcus
           erythropolis SK121]
 gi|229323426|gb|EEN89184.1| riboflavin biosynthesis protein RibD domain protein [Rhodococcus
           erythropolis SK121]
          Length = 190

 Score = 43.3 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 284 GRGVT-SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
              +   +LV G   + H+ + + LVD + L    +++G GG   P     +       R
Sbjct: 115 KEQIDGEILVAGSRTLVHALLLAGLVDELRLMVFPVILGSGGRVFPESADKIVLELKDDR 174

Query: 343 RDYFGSDVCL 352
           R   G  V  
Sbjct: 175 RYESGVQVLT 184


>gi|255035568|ref|YP_003086189.1| bifunctional deaminase-reductase domain-containing protein
           [Dyadobacter fermentans DSM 18053]
 gi|254948324|gb|ACT93024.1| bifunctional deaminase-reductase domain protein [Dyadobacter
           fermentans DSM 18053]
          Length = 189

 Score = 43.3 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 73/214 (34%), Gaps = 30/214 (14%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFI----SKNQVHLLRAQSDAILVGIGTVLADD 204
              + L+  +S D         +   +       S + +       D IL+G  T     
Sbjct: 1   MRKVILQEWISLDGYAEDRNGTTDFFSSPKYAEGSDDDLLAFMEGIDTILLGANTYKLF- 59

Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
                 L    +  P         +  L +  + T      ++ +++ D   A   + + 
Sbjct: 60  ------LGYWPDVDP---------ETELIANRLNTTQK---LVFSKSLD--TAPWGKWEA 99

Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
             +I  D  D  + L    G+ +  ++  G  ++A + IN+ LVD I +    ++I + G
Sbjct: 100 CQVIKTDPVDTVRRLKQQEGKNI--VMW-GSLSIAQALINAGLVDDIQVRVVPVLI-KAG 155

Query: 325 IPSPLEEGYLEKNFMCVRRDYFGSDV-CLEYIGK 357
            P        E+    +    + + +  L Y  K
Sbjct: 156 RPLFEPSQNDEQELELIESKSYPTGITLLRYAPK 189


>gi|156396554|ref|XP_001637458.1| predicted protein [Nematostella vectensis]
 gi|156224570|gb|EDO45395.1| predicted protein [Nematostella vectensis]
          Length = 432

 Score = 43.3 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 62/181 (34%), Gaps = 22/181 (12%)

Query: 10  FMSAAL--RFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           FM  AL  R S W  G     P+   + V+D G ++    T      H  VQAL +  ++
Sbjct: 47  FMVLALFMRESPWADGE----PTTGAVYVQDNGRLLSVDCTRL--GIHGGVQALIKYPDK 100

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            +G T Y++  PC+       CA+F+ + G+++V      P+     R  + + +   + 
Sbjct: 101 IKGCTVYLSSFPCA------SCAKFLTQFGVKKVYYLPLTPEKEGDHRNTELIFRTSDVA 154

Query: 127 DRMMESEGK-------IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
             +   E             +      + R       +     +               S
Sbjct: 155 LFLFVPEVDSVILDRLETERSQYDYNNQTRPKSAGVESSDPTEVAWFRNVFFDYFGNPDS 214

Query: 180 K 180
           +
Sbjct: 215 R 215


>gi|225389259|ref|ZP_03758983.1| hypothetical protein CLOSTASPAR_03005 [Clostridium asparagiforme
           DSM 15981]
 gi|225044673|gb|EEG54919.1| hypothetical protein CLOSTASPAR_03005 [Clostridium asparagiforme
           DSM 15981]
          Length = 181

 Score = 43.3 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           D+ +L+ +L  R   ++ + GGA +  SF+   LVD   +    +++G  G+P  L   Y
Sbjct: 95  DVWELVFLLKQRSGKAIWLVGGAKLLKSFMEQELVDQYWISTLPVILG-KGMPLFLPGDY 153

Query: 334 LEK 336
            E+
Sbjct: 154 GER 156


>gi|329938756|ref|ZP_08288152.1| putative deaminase [Streptomyces griseoaurantiacus M045]
 gi|329302247|gb|EGG46139.1| putative deaminase [Streptomyces griseoaurantiacus M045]
          Length = 157

 Score = 43.3 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 47/138 (34%), Gaps = 25/138 (18%)

Query: 30  SVACLIV-KDGIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPC 79
            V  +++  DG  +  G            HAEV AL  A          G T  VTLEPC
Sbjct: 18  PVGAVVLSADGTPLATGHNEREATGDPTAHAEVLALRRAAAATGEWRLSGCTLVVTLEPC 77

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-------LSQKGIIVDRMMES 132
                   CA  + +  + RVV      D +    G  W       L+ +  +++ ++  
Sbjct: 78  ------TMCAGALQQSRVDRVVYGAR--DDKAGAAGSLWDLLRDRRLNHRPEVIEGVLAE 129

Query: 133 EGKIFLHAYLTRQVEKRS 150
           +    L  +       R 
Sbjct: 130 DCARLLTDFFRTGPPHRP 147


>gi|332687244|ref|YP_004457018.1| cytosine deaminase [Melissococcus plutonius ATCC 35311]
 gi|332371253|dbj|BAK22209.1| cytosine deaminase [Melissococcus plutonius ATCC 35311]
          Length = 164

 Score = 43.3 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 15/98 (15%)

Query: 1  MPVSSF--DA-RFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGR----GVTAYGGC 52
          M VS    D   ++   +  S+      + N     L+V D G ++       +T +   
Sbjct: 1  MEVSKIKKDHLYYLKRCIEISKQAK--KNGNTPFGALLVDDAGNILFEQENIEITEHICT 58

Query: 53 PHAEV-QALEEAGEEAR----GATAYVTLEPCSHYGRS 85
           HAE   A   + + ++    G T Y T EPC+    +
Sbjct: 59 GHAETTLAARASKKYSKDFLWGCTLYTTAEPCAMCTGT 96


>gi|239993617|ref|ZP_04714141.1| cytidine/deoxycytidylate deaminase family protein [Alteromonas
          macleodii ATCC 27126]
          Length = 93

 Score = 43.3 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 6/56 (10%)

Query: 4  SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHA 55
          +  D  +M  AL  +      +     V   +V +G +IG G     T      HA
Sbjct: 40 TEEDIMWMRHALTLADKAE--SIGEVPVGACVVLNGELIGEGFNTPITDNDPSAHA 93


>gi|225557565|gb|EEH05851.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
          Length = 289

 Score = 43.3 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 48/159 (30%), Gaps = 51/159 (32%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK------------DGIVIGRGVT-AYGGCPHA 55
            ++ A L  ++       TN  V  +++             +  ++  G T    G  HA
Sbjct: 23  HYLRACLSLAQQSPPK-PTNFRVGAILLSRTLLSPGRPRMYNDTILSTGYTLELPGNTHA 81

Query: 56  EVQALE-----------------------------------EAGE-EARGATAYVTLEPC 79
           E  AL                                    +A E E +    YVT+EPC
Sbjct: 82  EQCALAKYAARHGVTDERIGEVLPPPPSPPLPPQSSGPGTDKAPEGEQKNIILYVTMEPC 141

Query: 80  S-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
                 + PCA  I++           + +   +  GL+
Sbjct: 142 GKRLSGNMPCAARIVQMRRAASSFGNSEENRHAASVGLE 180


>gi|224367992|ref|YP_002602155.1| FolA [Desulfobacterium autotrophicum HRM2]
 gi|223690708|gb|ACN13991.1| FolA [Desulfobacterium autotrophicum HRM2]
          Length = 167

 Score = 43.3 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
           RK + N+I+ D +    +L  L   G + + + GG  +   F  + L+D I +    I  
Sbjct: 72  RKSDGNLIFTD-QPPDLILKGLDREGFSEVALIGGTQINSLFAQANLIDEIFVTVVPIFF 130

Query: 321 GEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLEYIGK 357
           G G     L +  ++     +  +      + L Y  K
Sbjct: 131 GRG---LSLFDCEMDNQLELLGTEIISDQSLVLRYRVK 165


>gi|318057054|ref|ZP_07975777.1| hypothetical protein SSA3_03876 [Streptomyces sp. SA3_actG]
 gi|318078495|ref|ZP_07985827.1| hypothetical protein SSA3_17704 [Streptomyces sp. SA3_actF]
          Length = 188

 Score = 43.3 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-KNFMCVRRDYF-GSDVC 351
           GGA +A + + + L+D  ++    +++G G   +P         N   V    F G  V 
Sbjct: 125 GGATLAGAAMRAGLIDEYVIAAHPVLVGGG---TPFFTALDSWVNLDLVETRTFPGGVVL 181

Query: 352 LEY 354
             Y
Sbjct: 182 SRY 184


>gi|313635947|gb|EFS01887.1| tRNA-specific adenosine deaminase [Listeria seeligeri FSL S4-171]
          Length = 81

 Score = 43.3 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 11/76 (14%)

Query: 73  YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS-----QKGIIVD 127
           YVTLEPC      P C+  I+   I +V     DP    +G  +  L          +  
Sbjct: 1   YVTLEPC------PMCSGAILLSRIDKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCEVES 54

Query: 128 RMMESEGKIFLHAYLT 143
            +ME+E    L ++  
Sbjct: 55  GLMEAESSEMLKSFFQ 70


>gi|315305132|ref|ZP_07875140.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           ivanovii FSL F6-596]
 gi|313626498|gb|EFR95623.1| cytidine/deoxycytidylate deaminase family protein [Listeria
           ivanovii FSL F6-596]
          Length = 81

 Score = 43.3 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 11/76 (14%)

Query: 73  YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS-----QKGIIVD 127
           YVTLEPC      P C+  I+   I +V     DP    +G  +  L          +  
Sbjct: 1   YVTLEPC------PMCSGAILLSRIDKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCEVES 54

Query: 128 RMMESEGKIFLHAYLT 143
            +ME+E    L ++  
Sbjct: 55  GLMEAESSEMLKSFFQ 70


>gi|108761578|ref|YP_630047.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Myxococcus xanthus DK 1622]
 gi|108465458|gb|ABF90643.1| RibD domain protein [Myxococcus xanthus DK 1622]
          Length = 184

 Score = 43.3 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 4/85 (4%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           DL++ ++ L  +    +LV G   +A +     L+D   +    I+ G G  P+      
Sbjct: 101 DLREAISALKAKTERGVLV-GAPKLAAALEELGLIDEYRIVVHPIISGSG--PTLFHGLS 157

Query: 334 LEKNFMCVRRDYFGSDV-CLEYIGK 357
             ++   +    F S V  L +  K
Sbjct: 158 SARHLELLSTQRFKSGVQALHFRRK 182


>gi|319784273|ref|YP_004143749.1| CMP/dCMP deaminase zinc-binding protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317170161|gb|ADV13699.1| CMP/dCMP deaminase zinc-binding protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 149

 Score = 43.3 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 30/88 (34%), Gaps = 15/88 (17%)

Query: 30  SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
            V  +I     V+               HAE+  + EA      E   G   YVTLEPC+
Sbjct: 24  PVGAVIANGAGVVASAGNRTRELADPTAHAEMLVIREACRKLSAERLTGHDLYVTLEPCA 83

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                  CA  I    +RR+     D  
Sbjct: 84  M------CAGAISFARLRRLYFGAADDK 105


>gi|258651625|ref|YP_003200781.1| bifunctional deaminase-reductase domain-containing protein
           [Nakamurella multipartita DSM 44233]
 gi|258554850|gb|ACV77792.1| bifunctional deaminase-reductase domain protein [Nakamurella
           multipartita DSM 44233]
          Length = 204

 Score = 43.3 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 3/112 (2%)

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           I  + N  P   ++ +   +N         D    +  L  +G   + V G   +A + +
Sbjct: 92  IAASMNHSPKYVVSNQLTEVNWAGTTILTGDPVPAVRELKAQGEGDITVLGSGHLARTLL 151

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
            + LVD + L+   +++G G                 V R   G+ V L Y 
Sbjct: 152 AAGLVDELRLFVHPLLMGTGKRLFGELPDPRTLTLQTVARTDLGT-VALVYR 202


>gi|224824662|ref|ZP_03697769.1| bifunctional deaminase-reductase domain protein [Lutiella
           nitroferrum 2002]
 gi|224603155|gb|EEG09331.1| bifunctional deaminase-reductase domain protein [Lutiella
           nitroferrum 2002]
          Length = 209

 Score = 43.3 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 18/34 (52%)

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           + GGA     ++ + L+D   L+ + +++G G  
Sbjct: 140 ISGGANTIRQYLAAGLIDEFTLHLAPVLLGGGAR 173


>gi|284992017|ref|YP_003410571.1| bifunctional deaminase-reductase domain-containing protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284065262|gb|ADB76200.1| bifunctional deaminase-reductase domain protein [Geodermatophilus
           obscurus DSM 43160]
          Length = 186

 Score = 43.3 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 23/136 (16%)

Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282
           ++ P  +     K +       VI  T   DP + L              R   + +  L
Sbjct: 73  VIAPMHEWPYQGKPVH------VISTTLEPDPRITLH-------------RSFDEAVAAL 113

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
              G   + V+GG  V   F+ + L+  + L R+ ++IGEG   +P      +     VR
Sbjct: 114 TTAGYRRVYVDGGRTVHD-FLAAGLIGDLTLSRAPVLIGEG--HTPFGPLPADVLLEHVR 170

Query: 343 RDYF-GSDVCLEYIGK 357
              F G  V   Y  +
Sbjct: 171 TQTFRGGMVQTTYRVR 186


>gi|229087128|ref|ZP_04219278.1| Bifunctional deaminase-reductase domain protein [Bacillus cereus
           Rock3-44]
 gi|228696196|gb|EEL49031.1| Bifunctional deaminase-reductase domain protein [Bacillus cereus
           Rock3-44]
          Length = 192

 Score = 43.3 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           +     D  + +  L  +   +L + GG  +A S +  +L+D ++L  + ++IGEG   +
Sbjct: 102 VELVREDAVEFIKNLKMKEAGNLWLCGGGELAGSLVQQQLIDQVVLKINPVIIGEG---T 158

Query: 328 PLEE 331
           PL  
Sbjct: 159 PLFG 162


>gi|283851075|ref|ZP_06368359.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio sp. FW1012B]
 gi|283573471|gb|EFC21447.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio sp. FW1012B]
          Length = 181

 Score = 43.3 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 16/97 (16%)

Query: 30  SVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
            V  +++   G V+ +             HAE+ AL +A          G+   VTLEPC
Sbjct: 47  PVGAVLLSGAGEVLAQTGNGPISRADPTAHAEILALRQAAARVGNYRLPGSILVVTLEPC 106

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
                   C   +I   +  +V    DP        L
Sbjct: 107 LM------CLGAMIHARVGLLVYGAPDPRTGAVDSRL 137


>gi|254173880|ref|ZP_04880551.1| carbon-monoxide dehydrogenase, catalytic subunit [Thermococcus sp.
           AM4]
 gi|214032129|gb|EEB72960.1| carbon-monoxide dehydrogenase, catalytic subunit [Thermococcus sp.
           AM4]
          Length = 632

 Score = 43.3 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 34  LIVKDGIVIGRGVTAYGGCPHAEV--QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQF 91
           LI +D +V+G G  +        +  +A++ AG   +     + + PC H G    C++ 
Sbjct: 469 LIKRDVLVVGTGCWSIAAAMEGLMSPKAVDLAGPGLKKICEALNIPPCLHMGSCVDCSRI 528

Query: 92  IIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +I  G     + VD  D+  +G   +W+S+K +
Sbjct: 529 LIALGALADALGVDISDLPAAGSAPEWMSEKAV 561


>gi|13471055|ref|NP_102624.1| hypothetical protein mlr0926 [Mesorhizobium loti MAFF303099]
 gi|14021799|dbj|BAB48410.1| mlr0926 [Mesorhizobium loti MAFF303099]
          Length = 188

 Score = 43.3 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV-CL 352
           GGA +A     + L+D   LY   +V+G G    P  +  L      +  +     V  L
Sbjct: 123 GGADLAADLTRAGLIDEYRLYMHPVVLGGGK---PYFQSGLSLALKPLGTESLPQGVTLL 179

Query: 353 EYIGKN 358
            Y   N
Sbjct: 180 RYAPAN 185


>gi|312951985|ref|ZP_07770870.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX0102]
 gi|310630063|gb|EFQ13346.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX0102]
          Length = 196

 Score = 43.3 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 33/85 (38%)

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
           T  L+P +   E+    +  +  + +         D   L+  L       + + GG  V
Sbjct: 77  TQELSPDVYFYEDKHSYIITSHPEPSTASRTFTKEDPVTLIRRLKEEDGAGIWIVGGPKV 136

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323
               + + L+D+ IL    + +GEG
Sbjct: 137 VQPLLTADLIDTFILTTIPLFLGEG 161


>gi|163745925|ref|ZP_02153284.1| cytidine and deoxycytidylate deaminase family protein
          [Oceanibulbus indolifex HEL-45]
 gi|161380670|gb|EDQ05080.1| cytidine and deoxycytidylate deaminase family protein
          [Oceanibulbus indolifex HEL-45]
          Length = 145

 Score = 43.3 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 10/65 (15%)

Query: 25 TSTNPSVACLIVK-DGIVIGRGVTAYGG----CPHAEVQALEEA-----GEEARGATAYV 74
          T     V  ++V   G ++               HAE+ AL  A      E   G   YV
Sbjct: 13 TRGEVPVGAVVVSPAGQIVAAAGNETRARNDPTAHAEMLALRAACAAVGSERLIGHALYV 72

Query: 75 TLEPC 79
          TLEPC
Sbjct: 73 TLEPC 77


>gi|298529750|ref|ZP_07017153.1| CMP/dCMP deaminase zinc-binding [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511186|gb|EFI35089.1| CMP/dCMP deaminase zinc-binding [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 152

 Score = 43.3 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 43/135 (31%), Gaps = 39/135 (28%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
           S+D  +M      SR    L      V  + VKD  ++  G                   
Sbjct: 6   SWDQYYMRITHLVSRRSTCLRR---VVGAMAVKDKRILATGYNGAPAGLEHCQDVGCLRD 62

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE   + +A   G    G+  Y T +PC        C++ +I 
Sbjct: 63  EMGIPSGERHELCRGLHAEQNVIIQAAIHGVSITGSFIYCTTQPCLI------CSKMLIN 116

Query: 95  CGIRRVVVCVDDPDV 109
           CG++++      PD 
Sbjct: 117 CGVKKIYFSQGYPDP 131


>gi|302532151|ref|ZP_07284493.1| deaminase-reductase domain-containing protein [Streptomyces sp. C]
 gi|302441046|gb|EFL12862.1| deaminase-reductase domain-containing protein [Streptomyces sp. C]
          Length = 213

 Score = 43.3 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 18/30 (60%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            GA +A + + + L+D  +L  + +++G G
Sbjct: 150 AGATLAGTAMRAGLIDEYVLATAPVLVGGG 179


>gi|196231950|ref|ZP_03130806.1| bifunctional deaminase-reductase domain protein [Chthoniobacter
           flavus Ellin428]
 gi|196224072|gb|EDY18586.1| bifunctional deaminase-reductase domain protein [Chthoniobacter
           flavus Ellin428]
          Length = 215

 Score = 43.0 bits (100), Expect = 0.066,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 19/30 (63%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GGA+    ++  RL+D + +  + +++GEG
Sbjct: 153 GGASTIRQYLRERLIDELHIAIAPVLLGEG 182


>gi|256377450|ref|YP_003101110.1| bifunctional deaminase-reductase domain protein [Actinosynnema
           mirum DSM 43827]
 gi|255921753|gb|ACU37264.1| bifunctional deaminase-reductase domain protein [Actinosynnema
           mirum DSM 43827]
          Length = 186

 Score = 43.0 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
           GGA +  + + + LVD   +    +++G G    P  +G      +  R 
Sbjct: 124 GGARLGGAAMRAGLVDEYEIVTHPVLLGGGDPFFPALDGRAPLELLETRT 173


>gi|108800567|ref|YP_640764.1| CMP/dCMP deaminase, zinc-binding protein [Mycobacterium sp. MCS]
 gi|119869706|ref|YP_939658.1| CMP/dCMP deaminase, zinc-binding [Mycobacterium sp. KMS]
 gi|126436183|ref|YP_001071874.1| CMP/dCMP deaminase, zinc-binding [Mycobacterium sp. JLS]
 gi|108770986|gb|ABG09708.1| CMP/dCMP deaminase, zinc-binding protein [Mycobacterium sp. MCS]
 gi|119695795|gb|ABL92868.1| CMP/dCMP deaminase, zinc-binding protein [Mycobacterium sp. KMS]
 gi|126235983|gb|ABN99383.1| CMP/dCMP deaminase, zinc-binding protein [Mycobacterium sp. JLS]
          Length = 154

 Score = 43.0 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 51/142 (35%), Gaps = 17/142 (11%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG--EEA 67
           A   +R  +      P  A L    G ++G G            HAE  A   AG   + 
Sbjct: 18  AYAEARKGL-SEGGIPIGAALFSAGGTLLGSGHNRRVQDDDPSVHAETDAFRNAGRQRDY 76

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           R      TL PC +      C+  + +  I  V+V     + R    G +WL++ G+ V 
Sbjct: 77  RSTVMVTTLSPCWY------CSGLVRQFNIGAVIVG----ESRTFTGGHEWLAEHGVEVT 126

Query: 128 RMMESEGKIFLHAYLTRQVEKR 149
            + +      +  ++  + +  
Sbjct: 127 VLDDDRCVSMMTEFIDAEPDLW 148


>gi|182412176|ref|YP_001817242.1| deaminase-reductase domain-containing protein [Opitutus terrae
           PB90-1]
 gi|177839390|gb|ACB73642.1| bifunctional deaminase-reductase domain protein [Opitutus terrae
           PB90-1]
          Length = 215

 Score = 43.0 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
             PV ++T +    L +        +       L++      G+ V    V GGAA    
Sbjct: 103 HTPVFVLTHHPRASLQMEGGTTFHFVTDGIHAALQRATEAAGGQDVR---VGGGAATIRQ 159

Query: 302 FINSRLVDSIILYRSQIVIGEG 323
           ++ + LVD + L  + I++G G
Sbjct: 160 YLQAGLVDQLHLAIAPIILGSG 181


>gi|328885360|emb|CCA58599.1| Bifunctional deaminase-reductase domain protein [Streptomyces
           venezuelae ATCC 10712]
          Length = 215

 Score = 43.0 bits (100), Expect = 0.070,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 19/30 (63%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GGA V   F+++ LVD++ +  + + +G G
Sbjct: 152 GGATVIREFLDAGLVDTLHVAVAPVKLGAG 181


>gi|255017990|ref|ZP_05290116.1| hypothetical protein LmonF_10155 [Listeria monocytogenes FSL
           F2-515]
          Length = 141

 Score = 43.0 bits (100), Expect = 0.070,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 21/120 (17%)

Query: 32  ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPC 88
            C +V    +            HAE+ A+ +    G     A  YVT  PC        C
Sbjct: 12  GCYVVDGHCI---------RTIHAEMNAILQCAKFGATTDKAELYVTHFPCL------AC 56

Query: 89  AQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
            + II+ GI++V    D  +   +   L+  +  G+ + ++   E  + ++ +   ++  
Sbjct: 57  TKSIIQAGIKKVYFAKDYKNHPYA---LELFNIAGVELQKVEFDESVLQVNNWNGEKMHT 113


>gi|320006748|gb|ADW01598.1| bifunctional deaminase-reductase domain protein [Streptomyces
           flavogriseus ATCC 33331]
          Length = 178

 Score = 43.0 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 65/201 (32%), Gaps = 37/201 (18%)

Query: 157 AVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE 216
            +S D  I   G     I   ++      + A + A+L+G GT       ++    G   
Sbjct: 14  VMSLDGFIAGPGHTMDWIFEHMTSATFPEVMAATGAMLIGRGTYEVGK-RMSAENTGY-- 70

Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276
                   D   +  L  +         V  +T + +  +A A R               
Sbjct: 71  --------DGGAQFVLTHRPPD-EPDPEVTFLTCDIEEAVARAHRAAG-----------D 110

Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
           K L IL            GA VA   +   LVD I++Y   +++G+G   +P   G    
Sbjct: 111 KNLEIL------------GADVAAQCLQRGLVDEILVYVLPVLLGDGVRFAP--PGLHRI 156

Query: 337 NFMCVRRDYFGSDVCLEYIGK 357
           +   +     G    L +  +
Sbjct: 157 DLEPLGNVQSGGVTMLRFRVR 177


>gi|187923289|ref|YP_001894931.1| bifunctional deaminase-reductase domain protein [Burkholderia
           phytofirmans PsJN]
 gi|187714483|gb|ACD15707.1| bifunctional deaminase-reductase domain protein [Burkholderia
           phytofirmans PsJN]
          Length = 220

 Score = 43.0 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 3/86 (3%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                 PV I+T +  P + +        +       L++      G  V    + GG  
Sbjct: 100 NPPYHVPVFIMTHHARPPIEMEGGTTFHFVTGGVRETLERAREAAGGMDVR---IGGGPN 156

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323
               ++   L+D + +  + +++G+G
Sbjct: 157 TIQQYLRESLIDELHIAIAPVLLGQG 182


>gi|284033835|ref|YP_003383766.1| bifunctional deaminase-reductase domain-containing protein
           [Kribbella flavida DSM 17836]
 gi|283813128|gb|ADB34967.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
           DSM 17836]
          Length = 201

 Score = 43.0 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
            +    P+ +VT        L  R   +  +         +       G   ++V GG  
Sbjct: 86  DSERRPPIFVVTHEPPATTRLGDRFTFVTELT------DAIAQARKAAGDKDVVVMGGGE 139

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
           + H+ + + L D ++L+ + +V+G+G    P   G
Sbjct: 140 ICHAVLAAGLADVLLLHVAPVVLGDGTRLYPAGPG 174


>gi|119505172|ref|ZP_01627247.1| putative zinc-binding hydrolase [marine gamma proteobacterium
          HTCC2080]
 gi|119458863|gb|EAW39963.1| putative zinc-binding hydrolase [marine gamma proteobacterium
          HTCC2080]
          Length = 78

 Score = 43.0 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 10/60 (16%)

Query: 30 SVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEAGEEAR-----GATAYVTLEPC 79
           V  ++  D G V+     A         HAE+ AL    E+       G T YVTLEPC
Sbjct: 18 PVGAVLAADSGEVLAVASNAQIMSCDPTAHAEMLALRLGAEKLNNYRLPGCTLYVTLEPC 77


>gi|327278242|ref|XP_003223871.1| PREDICTED: tRNA-specific adenosine deaminase-like protein 3-like
           [Anolis carolinensis]
          Length = 353

 Score = 43.0 bits (100), Expect = 0.073,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 30/119 (25%)

Query: 5   SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVK--DGIVIGRGVTAYGGCPHAEVQAL 60
           +     M  A++ ++     G+      V  ++V    G V+  G     G     +  +
Sbjct: 208 AAMQYHMELAIQAAQQGAKQGMR----PVGAVVVDPSSGKVLAVGHDCRDG-----LNPI 258

Query: 61  EEAGEEARGAT-----------AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           +     +  +T            Y+T EPC+       CA  ++   I RV   V  P 
Sbjct: 259 DHQSGHSSPSTNGLPYICTGYDMYLTREPCAM------CAMSLVHSRIERVFYGVPSPH 311


>gi|317476731|ref|ZP_07935974.1| RibD domain-containing protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316906906|gb|EFV28617.1| RibD domain-containing protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 172

 Score = 43.0 bits (100), Expect = 0.073,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
             +LV GG  +  S I + L+DS+ +Y   +++G+G          L   +         
Sbjct: 102 NDMLVVGGGKLLTSLIKAGLLDSLTIYTVPVMVGKG---IGFIGETLGSEWKLSESRVLD 158

Query: 348 SDVC 351
           + V 
Sbjct: 159 NGVV 162


>gi|270293222|ref|ZP_06199433.1| conserved hypothetical protein [Streptococcus sp. M143]
 gi|270279201|gb|EFA25047.1| conserved hypothetical protein [Streptococcus sp. M143]
          Length = 173

 Score = 43.0 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           + V GG ++    +++ L D +I+  + +++G  G+P   +E      +       FG  
Sbjct: 105 VFVIGGNSLVGPLLDADLFDHLIIQIAPLILG-KGVPLFTQEEGQCF-YQLDSLRQFGPF 162

Query: 350 VCLEYIGKN 358
             L +  K+
Sbjct: 163 AELVFSRKS 171


>gi|240171494|ref|ZP_04750153.1| deaminase-reductase domain-containing protein [Mycobacterium
           kansasii ATCC 12478]
          Length = 199

 Score = 43.0 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 2/88 (2%)

Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
            +  D  +++T L       L V  GA +A   + + LVD   +  +   +G G    P 
Sbjct: 112 LERGDPVEVVTKLKAETDGRLEV-AGATLAAPIVQAGLVDEYRIVVTPTAVGGGTPFFPT 170

Query: 330 EEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
              ++    +   R + G  V L Y  K
Sbjct: 171 LPSWISLRLLE-NRTFPGGAVLLRYAAK 197


>gi|295705361|ref|YP_003598436.1| riboflavin biosynthesis protein RibD [Bacillus megaterium DSM 319]
 gi|294803020|gb|ADF40086.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Bacillus megaterium DSM 319]
          Length = 172

 Score = 43.0 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
           + + GGA +   F+  + VD  I+    +++G  GIP   + G  E N        +G 
Sbjct: 107 IWLVGGADILADFLTEKRVDEFIISIIPVLLGA-GIP-LFKRGIPEMNLKLTDIKQYGQ 163


>gi|293400428|ref|ZP_06644574.1| riboflavin biosynthesis protein RibD C- domain protein
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306828|gb|EFE48071.1| riboflavin biosynthesis protein RibD C- domain protein
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 191

 Score = 43.0 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 51/181 (28%), Gaps = 31/181 (17%)

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
            +         L IA+S D  I         + G  +           +  + G+ TV+ 
Sbjct: 1   MKGGYVMRKTILFIAMSLDGFIADKNGKVFWLAGEDAN---QNDMITYETFIKGVDTVI- 56

Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
                   +     H           +  +  K      L   II  + +          
Sbjct: 57  --------MGANTYHQ---------LRTEISPKQWIYPTLTSYIITHQTEASTEK----- 94

Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
                I     D   L+  L  +    + + GGA++ +  + +  +D   +     ++G 
Sbjct: 95  -----IRFTMEDPVALIRHLKTQPGKDIWICGGASIVNQIMQADSIDRYHINVIPTLLGT 149

Query: 323 G 323
           G
Sbjct: 150 G 150


>gi|312195390|ref|YP_004015451.1| CMP/dCMP deaminase zinc-binding protein [Frankia sp. EuI1c]
 gi|311226726|gb|ADP79581.1| CMP/dCMP deaminase zinc-binding protein [Frankia sp. EuI1c]
          Length = 154

 Score = 43.0 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 15/86 (17%)

Query: 28  NPSVACLIV-KDGIVIGR---GVTAYGGCPHAEVQALEEA----GEEARGATAYVTLEPC 79
           NP    ++V  DG  +      VT      HAE  A+  A    G +  GAT   + EPC
Sbjct: 25  NPY-GAVLVTADGQAVEERNRVVTTSDPTAHAESMAIRVAAKTWGIDLSGATMVASFEPC 83

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVD 105
                 P C   I+E GI  + +   
Sbjct: 84  ------PMCCGAILEAGITVLAIGQR 103


>gi|330467680|ref|YP_004405423.1| hypothetical protein VAB18032_18605 [Verrucosispora maris
           AB-18-032]
 gi|328810651|gb|AEB44823.1| hypothetical protein VAB18032_18605 [Verrucosispora maris
           AB-18-032]
          Length = 185

 Score = 43.0 bits (100), Expect = 0.078,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           +LV G A +A     + LVD   L    +++G GG      +G  ++    V    +G+ 
Sbjct: 117 ILVHGSATLAQGLAAAGLVDRYHLLIFPLLLG-GGRRLFAPDGADKQQLTLVEHATYGNG 175

Query: 350 VCL 352
           V L
Sbjct: 176 VQL 178


>gi|227536884|ref|ZP_03966933.1| deaminase-reductase domain protein [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227243311|gb|EEI93326.1| deaminase-reductase domain protein [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 187

 Score = 43.0 bits (100), Expect = 0.078,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 63/204 (30%), Gaps = 33/204 (16%)

Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215
           +AV+ D  I                +            + GI T+           +   
Sbjct: 15  LAVTLDGFIEGPNGEVDWCIMDEDMDFA--------GFMSGIDTIFYGR----VSYDAWG 62

Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275
            + P    +       ++ ++          + +          F             D+
Sbjct: 63  NYQPA---ISAG---PVEKQLWNDIHSKQKFVFSSQSRADDHATFIPS----------DI 106

Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
            + ++ +  +G   + + GGA++  SFI   L+D   +    + +G G    PL E   +
Sbjct: 107 AQRVSDIKAQGGKDIWLYGGASLIRSFIQLGLIDIYRISVHPVALGSGK---PLFENLKD 163

Query: 336 K-NFMCVRRDYFGSDVC-LEYIGK 357
           +     +R + F S V  L Y  K
Sbjct: 164 RVQLNLIRTNTFKSGVVQLIYEQK 187


>gi|229100506|ref|ZP_04231361.1| Bifunctional deaminase-reductase domain protein [Bacillus cereus
           Rock3-29]
 gi|228682888|gb|EEL36911.1| Bifunctional deaminase-reductase domain protein [Bacillus cereus
           Rock3-29]
          Length = 183

 Score = 43.0 bits (100), Expect = 0.078,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
            +G   + + GG  +A S I  +L+D ++L  + I++GEG   S         N   V  
Sbjct: 109 QQGKGKIWLCGGGELAGSLIKHKLIDQLVLKVNPIIVGEG--ISLFGSVKPRLNLKLVDM 166

Query: 344 DYFGSDVC 351
             + S V 
Sbjct: 167 KQYSSGVV 174


>gi|316979440|gb|EFV62236.1| putative deoxycytidylate deaminase [Trichinella spiralis]
          Length = 165

 Score = 43.0 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 47/153 (30%), Gaps = 34/153 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV----------------- 46
             ++ FM  A   S+           V   I     ++I  G                  
Sbjct: 4   DTESFFMGIACLSSKRSK---DPVTQVGACIANSSDVIISTGYNGMPVGCDDNVLPWGKS 60

Query: 47  ------TAYGGCPHAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
                 T +    HAE+ A   A   E  G   YVTL PC+       CA+ II  GI+ 
Sbjct: 61  LPNPLETKHPFVCHAELNAFLNASTSELSGCRLYVTLFPCNM------CAKLIISSGIKE 114

Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
           ++   D  +        +   + G+       S
Sbjct: 115 IIYLRDKSNKWEMMASRKMFDESGVKYRPFSCS 147


>gi|171689714|ref|XP_001909797.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944819|emb|CAP70931.1| unnamed protein product [Podospora anserina S mat+]
          Length = 190

 Score = 43.0 bits (100), Expect = 0.080,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 58/178 (32%), Gaps = 34/178 (19%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT---VLADDP 205
              +   +A S D  I         I    +      L AQ    ++G  T    LA DP
Sbjct: 2   PRKVRYNLAASLDGFIATPTGSYSWIVDDKT-IDFESLYAQFGCFVMGRTTHEAYLAMDP 60

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
                       +P+R                KT     V++V +  D  L        +
Sbjct: 61  A----------ENPLR-------------AYYKTGS---VVVVGDTLDRDLETQVEVVKL 94

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
             +    R+LK        +    + + GG  +A   +   LVD++ +    +++GEG
Sbjct: 95  GEVESFVRELK---GREGEKD-GDIWLMGGGKLAGEMLRLGLVDTVEVAVMPVLLGEG 148


>gi|94969508|ref|YP_591556.1| bifunctional deaminase-reductase-like [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551558|gb|ABF41482.1| bifunctional deaminase-reductase-like protein [Candidatus
           Koribacter versatilis Ellin345]
          Length = 175

 Score = 43.0 bits (100), Expect = 0.080,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           +   +L+ L    V  + ++GG      F+   LVD + + R  ++IGEG
Sbjct: 93  EPAHILSKLKALRVKHVYLDGG-ITIQRFLAVGLVDRMTVTRVPVLIGEG 141


>gi|152966637|ref|YP_001362421.1| bifunctional deaminase-reductase domain protein [Kineococcus
           radiotolerans SRS30216]
 gi|151361154|gb|ABS04157.1| bifunctional deaminase-reductase domain protein [Kineococcus
           radiotolerans SRS30216]
          Length = 212

 Score = 43.0 bits (100), Expect = 0.080,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           G   + V+GG  V  SF+ + LV  I +    +++GEG
Sbjct: 142 GARRVYVDGG-QVVQSFLAAGLVQEITITTVPVLLGEG 178


>gi|318060329|ref|ZP_07979052.1| hypothetical protein SSA3_20463 [Streptomyces sp. SA3_actG]
          Length = 80

 Score = 43.0 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 21/77 (27%), Gaps = 2/77 (2%)

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
             RG+   L EGG  +    I +  VD + L  S  +              L        
Sbjct: 1   AARGLRRQLAEGGPQLLGRLIAADTVDELCLTVSPFLTAGDASRIAHAPQALTTPARLRP 60

Query: 343 RDYFGSD--VCLEYIGK 357
                 D  +   Y+  
Sbjct: 61  ASILAEDGFLFTRYVRD 77


>gi|300784804|ref|YP_003765095.1| cytosine deaminase [Amycolatopsis mediterranei U32]
 gi|299794318|gb|ADJ44693.1| cytosine deaminase [Amycolatopsis mediterranei U32]
          Length = 152

 Score = 43.0 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 49/143 (34%), Gaps = 19/143 (13%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEAGEEA- 67
           A   +   +G       +   +    G ++GRG            HAE  A   AG    
Sbjct: 12  AREEAE--LGKAEGGVPIGAALFDSTGTLLGRGHNRRVQDGDPSMHAETAAFRNAGRRPH 69

Query: 68  -RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
            R      TL PC +      C+  + + GI RVV+     +      G  WL+  G+ +
Sbjct: 70  YRDTIMVTTLSPCWY------CSGLVRQFGIGRVVIG----EAETFHGGHDWLAGLGVEI 119

Query: 127 DRMMESEGKIFLHAYLTRQVEKR 149
             + +      +  ++  + +  
Sbjct: 120 TLLDDPGCTALMTEFIAARPDLW 142


>gi|302527351|ref|ZP_07279693.1| hypothetical protein SSMG_03733 [Streptomyces sp. AA4]
 gi|302436246|gb|EFL08062.1| hypothetical protein SSMG_03733 [Streptomyces sp. AA4]
          Length = 364

 Score = 43.0 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 10/105 (9%)

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           AP + V  +  P       +        +      +       G   + V GG ++A   
Sbjct: 250 APPVFVVTHAGPGKVRLGERFRFVTDGIES----AVEQARAAAGGKDVTVGGGGSIASQV 305

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
           +++ L D + ++ + IV+G G   +PL   + E+N   VR +  G
Sbjct: 306 LHAGLADVLRIHLAPIVLGGG---TPL---FPEENSAPVRLEPLG 344


>gi|239996129|ref|ZP_04716653.1| cytidine/deoxycytidylate deaminase family protein [Alteromonas
           macleodii ATCC 27126]
          Length = 109

 Score = 43.0 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 11/91 (12%)

Query: 59  ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
           A          AT YVTLEPCS       CA  ++   ++RVV    D     +G  +  
Sbjct: 4   AAAVQNYRLIDATLYVTLEPCSM------CAGMLVHARVKRVVFGAKDAKTGAAGSVMNL 57

Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYLTR 144
           L    +     +V  ++  E    L  +  +
Sbjct: 58  LQHPALNHQLEVVSGVLADECANKLSDFFRK 88


>gi|297200534|ref|ZP_06917931.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sviceus ATCC 29083]
 gi|197709659|gb|EDY53693.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sviceus ATCC 29083]
          Length = 215

 Score = 43.0 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GGAAV   ++ + L+D + L  + ++IG G
Sbjct: 153 GGAAVIRQYLRAGLIDELHLAIAPLLIGRG 182


>gi|163792387|ref|ZP_02186364.1| hypothetical protein BAL199_16108 [alpha proteobacterium BAL199]
 gi|159182092|gb|EDP66601.1| hypothetical protein BAL199_16108 [alpha proteobacterium BAL199]
          Length = 163

 Score = 43.0 bits (100), Expect = 0.082,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 17/106 (16%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG---CPHAEVQALEE 62
           D + +  AL  +R    L + +     ++V  DG V+       GG     H E      
Sbjct: 6   DLKHLRRALELAREA--LEAGDAPFGSVLVASDGTVLAEDRNRTGGGDRTRHPEFALARW 63

Query: 63  AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           A E  +     GAT Y + E C      P CA      G+ R+V  
Sbjct: 64  AAENMKPADRPGATVYTSGEHC------PMCAAAHGFVGLGRIVYA 103


>gi|157150202|ref|YP_001449667.1| reductase [Streptococcus gordonii str. Challis substr. CH1]
 gi|157074996|gb|ABV09679.1| reductase [Streptococcus gordonii str. Challis substr. CH1]
          Length = 173

 Score = 43.0 bits (100), Expect = 0.082,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF-MCVRRDYFGS 348
           + V GG ++    +++ L D +I+  + +++G+G    PL      + F        FG 
Sbjct: 105 VFVIGGNSLVRPLLDADLFDHLIIQIAPLILGKG---VPLFTQEEGQRFYQLDSLRQFGP 161

Query: 349 DVCLEYIGKN 358
              L +  K+
Sbjct: 162 FAELVFSRKS 171


>gi|118471960|ref|YP_889465.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Mycobacterium smegmatis str. MC2 155]
 gi|118173247|gb|ABK74143.1| riboflavin biosynthesis protein RibD C- domain protein
           [Mycobacterium smegmatis str. MC2 155]
          Length = 185

 Score = 43.0 bits (100), Expect = 0.082,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 55/201 (27%), Gaps = 27/201 (13%)

Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR-AQSDAILVGIGTVLADDPELTCRL 211
           +    +S D  +  A                H+ R A     ++G  T          R 
Sbjct: 5   SYSTTISIDGYVNDADGDFQWSAPSDPVFDTHVERMAAVSTEVLGRKTYEL------MRY 58

Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD 271
                        D H     + +  +       ++V+    P    A R +   +   D
Sbjct: 59  WET----------DHHDFSPAEEEFARRWRKIQKVVVSSTLTPDHVAAGRDRL--VPRLD 106

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             +L+K++      G   +    G   A   I + +VD    +    V+G G    P   
Sbjct: 107 LDELRKIVAD--ATGTVEIF---GPTTAAPAIRAGMVDEFNFFVVPKVVGGGLRALP--- 158

Query: 332 GYLEKNFMCVRRDYFGSDVCL 352
             +  +        F   V  
Sbjct: 159 DDVRLDLGLAEHTIFDDGVVY 179


>gi|221069779|ref|ZP_03545884.1| bifunctional deaminase-reductase domain protein [Comamonas
           testosteroni KF-1]
 gi|220714802|gb|EED70170.1| bifunctional deaminase-reductase domain protein [Comamonas
           testosteroni KF-1]
          Length = 189

 Score = 43.0 bits (100), Expect = 0.082,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 8/106 (7%)

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
             P  + +    P++       ++  +    + +   +      G  ++ + GG  +A  
Sbjct: 74  AQPAWVFSSRQLPLI----EGADVRFVSGAVQPVLASMR--AAAGDRNIWIVGGGDLAGQ 127

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
           F ++ L+D +I+      +G G     L    L            G
Sbjct: 128 FHDAGLLDEVIVQIGSATLGRG--KPLLPRRLLSPVLQLQSVQQMG 171


>gi|239623597|ref|ZP_04666628.1| deoxycytidylate deaminase [Clostridiales bacterium 1_7_47_FAA]
 gi|239521628|gb|EEQ61494.1| deoxycytidylate deaminase [Clostridiales bacterium 1_7_47FAA]
          Length = 161

 Score = 43.0 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 37/104 (35%), Gaps = 34/104 (32%)

Query: 32  ACLIVKDGIVIGRGV-----------------------TAYGG-----CPHAEVQALEEA 63
             +IVKD +V+  G                            G       HAE  AL   
Sbjct: 35  GAVIVKDDVVVSTGYNGSPRGYDNCCDIGSCPRIKLGLHQGEGYGMCRAIHAEQNALLNC 94

Query: 64  -GEEARGATAYVT----LEPCSHYGR-SPPCAQFIIECGIRRVV 101
             E+  GA  Y+     ++   H  +  P CA+ II+ GIR V+
Sbjct: 95  SREQTMGADLYLAGVNPVDNTVHRAKPCPVCARMIIQAGIRNVI 138


>gi|158339718|ref|YP_001520725.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Acaryochloris marina MBIC11017]
 gi|158309959|gb|ABW31575.1| riboflavin biosynthesis protein RibD C-terminus domain protein
           [Acaryochloris marina MBIC11017]
          Length = 191

 Score = 43.0 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 7/96 (7%)

Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
            +N+ ++  +  DL   L    G+G+    + GG  +A +     LVD +IL  +  ++ 
Sbjct: 100 DENVELVSNNTIDLVTSLKSQSGKGI---WLCGGGDLATTLFAHHLVDQLILKINPFLMV 156

Query: 322 EGGIPSPLEEGYLEKN-FMCVRRDYFGSDVCLEYIG 356
            G    PL  G +++          + + V L Y  
Sbjct: 157 SG---IPLFSGVIQQTALELTDHKIYENGVLLLYYR 189


>gi|91773324|ref|YP_566016.1| bifunctional deaminase-reductase-like protein [Methanococcoides
           burtonii DSM 6242]
 gi|91712339|gb|ABE52266.1| Dihydrofolate reductase [Methanococcoides burtonii DSM 6242]
          Length = 174

 Score = 43.0 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%)

Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           L+  L       + V GG  V   F++S+L+D II+    I++GEG
Sbjct: 95  LVEELSSETEKDIWVLGGGEVVREFLDSKLIDEIIIGVMPILLGEG 140


>gi|145595208|ref|YP_001159505.1| deaminase-reductase domain-containing protein [Salinispora tropica
           CNB-440]
 gi|145304545|gb|ABP55127.1| bifunctional deaminase-reductase domain protein [Salinispora
           tropica CNB-440]
          Length = 222

 Score = 43.0 bits (100), Expect = 0.085,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 3/82 (3%)

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
             PV ++T                 +       L +       R V    + GG+    +
Sbjct: 109 HTPVYVLTHQRRAPWERLGGTTFHFVNDGIHHALDQARKAAGERDVR---ISGGSETILA 165

Query: 302 FINSRLVDSIILYRSQIVIGEG 323
           ++N+ LVD   +  + ++ G G
Sbjct: 166 YLNAGLVDEFSIALAPVLFGAG 187


>gi|90419974|ref|ZP_01227883.1| cytidine/deoxycytidylate deaminase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336015|gb|EAS49763.1| cytidine/deoxycytidylate deaminase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 202

 Score = 43.0 bits (100), Expect = 0.085,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 30/90 (33%), Gaps = 19/90 (21%)

Query: 30  SVACLIVKDGIVIGRG-----------VTAYGGCPHAEVQALEEAGEEARGATAYVTLEP 78
            V  +IV+   +I RG             A      A    L    E       YVTLEP
Sbjct: 77  PVGAVIVRGDEIIARGGNETRQRNDPTAHAEIVAIRAAAARLGS--ERLPDCDLYVTLEP 134

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           C+       CA  I    IRR+     DP 
Sbjct: 135 CAM------CAAAISFARIRRLYYGAADPK 158


>gi|271970366|ref|YP_003344562.1| hypothetical protein Sros_9200 [Streptosporangium roseum DSM 43021]
 gi|270513541|gb|ACZ91819.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
          Length = 183

 Score = 43.0 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           D+ + +  L       +L+ G   + +  I   L+D + L+   +++GEG       +G 
Sbjct: 96  DVAEEVAKLKAEDGKDILIYGSGDLVNYLIKHDLIDELKLFLHPVIVGEG--KRLFSDGI 153

Query: 334 LEKNFMCVRRDYFGSD-VCLEYIG 356
             K +       FGS  + L+Y  
Sbjct: 154 DTKTWQLAGTHTFGSGAIVLDYRP 177


>gi|187926287|ref|YP_001892632.1| bifunctional deaminase-reductase domain protein [Ralstonia
           pickettii 12J]
 gi|241665774|ref|YP_002984133.1| bifunctional deaminase-reductase domain protein [Ralstonia
           pickettii 12D]
 gi|187728041|gb|ACD29205.1| bifunctional deaminase-reductase domain protein [Ralstonia
           pickettii 12J]
 gi|240867801|gb|ACS65461.1| bifunctional deaminase-reductase domain protein [Ralstonia
           pickettii 12D]
          Length = 220

 Score = 43.0 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 6/95 (6%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                 PV ++T +    + +A       I       L +      G+ V    + GG +
Sbjct: 100 NPPYHVPVFVLTHHARAPIEMAGGTTFHFITGGFREALDRAREAAGGKDVR---IGGGPS 156

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
               ++   L+D + +  S +++G G    PL EG
Sbjct: 157 TIRQYLREGLIDELHIAISPVLLGRGE---PLFEG 188


>gi|312139695|ref|YP_004007031.1| cytidine/deoxycytidylate deaminase [Rhodococcus equi 103S]
 gi|311889034|emb|CBH48347.1| putative cytidine/deoxycytidylate deaminase [Rhodococcus equi 103S]
          Length = 194

 Score = 42.6 bits (99), Expect = 0.087,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 50/186 (26%), Gaps = 23/186 (12%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEE 66
           M+ A R +   V      P    +I +DG ++ RG            H E++A+ +A + 
Sbjct: 13  MNEACRLAIESVENNWGGP-FGAVIARDGDIVARGQNRVLLTGDVTAHGEIEAIRKAVQV 71

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
              A   ++ E                E  ++ V      PD       +      G+ +
Sbjct: 72  LNAAAPSISREHVD-------------ESTLKLVPRPEGSPDRVPERARMLM----GMEI 114

Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
                         Y +R         L                        S  +V  L
Sbjct: 115 YTCGAPCPMCMSAIYWSRLDAVYFASDLAATSHIGFDDAFQYEDFTRPLAERS-IKVEQL 173

Query: 187 RAQSDA 192
           RA   A
Sbjct: 174 RADLGA 179


>gi|118591858|ref|ZP_01549253.1| putative deaminase [Stappia aggregata IAM 12614]
 gi|118435501|gb|EAV42147.1| putative deaminase [Stappia aggregata IAM 12614]
          Length = 155

 Score = 42.6 bits (99), Expect = 0.087,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 19/87 (21%)

Query: 34  LIVKDGIVIGRG------VTAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCSHY 82
           ++ ++G ++GRG              HAEV+A+ +A          GAT   + EPC+  
Sbjct: 23  VVDRNGEILGRGVNRVREYHDP--TAHAEVEAIRDACRTHGTVHLHGATLLASGEPCAM- 79

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDV 109
                C    ++ G+ R++   D  + 
Sbjct: 80  -----CYMSALDAGVSRILFAADRDEA 101


>gi|13472266|ref|NP_103833.1| hypothetical protein mlr2503 [Mesorhizobium loti MAFF303099]
 gi|14023011|dbj|BAB49619.1| mlr2503 [Mesorhizobium loti MAFF303099]
          Length = 224

 Score = 42.6 bits (99), Expect = 0.087,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D+   L  L  +    LL++  A +  + + + L+D I L    +++G+G       +
Sbjct: 115 GEDIVAALRRLSKQDGPDLLIQRSADLIQTLLANGLIDEIRLMIFPLLLGKG--KRLFGD 172

Query: 332 GYLEKNFMCVRRD 344
           G +   F  V+  
Sbjct: 173 GAMPAAFKLVKSQ 185


>gi|297190981|ref|ZP_06908379.1| riboflavin biosynthesis protein RibD [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197721894|gb|EDY65802.1| riboflavin biosynthesis protein RibD [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 213

 Score = 42.6 bits (99), Expect = 0.087,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           S+L  GGA   + ++ + LVD + L+   + +G G   + L EG        V   
Sbjct: 149 SVL--GGATTINQYLAAGLVDELRLHIVPLTLGAG---TRLFEGVPPLELEQVTSR 199


>gi|156395053|ref|XP_001636926.1| predicted protein [Nematostella vectensis]
 gi|156224034|gb|EDO44863.1| predicted protein [Nematostella vectensis]
          Length = 178

 Score = 42.6 bits (99), Expect = 0.087,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 268 IYCDCRDLKKLLTILVGRGVT--SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           I    +   +L+  +   G     + + GGA VA SF    L+D I+L      +GE GI
Sbjct: 89  ITVTKKSPTELMQKIRSEGKQGKDIWLLGGAGVARSFEKEGLIDEILLSFIPKTLGE-GI 147

Query: 326 PSPLEEGYLE 335
           P  L     E
Sbjct: 148 PLGLSYDGFE 157


>gi|304319888|ref|YP_003853531.1| cytidine and deoxycytidylate deaminase family protein [Parvularcula
           bermudensis HTCC2503]
 gi|303298791|gb|ADM08390.1| cytidine and deoxycytidylate deaminase family protein [Parvularcula
           bermudensis HTCC2503]
          Length = 172

 Score = 42.6 bits (99), Expect = 0.087,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 45/132 (34%), Gaps = 19/132 (14%)

Query: 1   MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGG----CPH 54
           +  S  D  R+M  AL  +   +   +    V  +++   G +I   V           H
Sbjct: 6   LSASDADLERWMDHALGLA--SMAARNGEVPVGAVLLSATGQLIAEAVNTPIAQCDPTAH 63

Query: 55  AEVQ-----ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AE+      AL        G T  VTLEPC+       CA  I    I  +V   DDP  
Sbjct: 64  AELAVLRKGALATGNYRLTGTTLLVTLEPCAM------CAGAICHARIGHLVYGADDPKG 117

Query: 110 RVSGRGLQWLSQ 121
                G     Q
Sbjct: 118 GAVRHGATLFDQ 129


>gi|5051806|emb|CAB45035.1| hypothetical protein [Amycolatopsis orientalis]
          Length = 202

 Score = 42.6 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           GGA   + ++ + L+D + L+     +G G   + L EG        V+  
Sbjct: 141 GGATTINQYLAAGLIDEVRLHIVPFTLGAG---TRLFEGVPPLKLEQVKSR 188


>gi|9631183|ref|NP_047965.1| gp20 [Streptomyces phage phiC31]
 gi|3947493|emb|CAA07144.1| gp20 [Streptomyces phage phiC31]
          Length = 117

 Score = 42.6 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 34/104 (32%), Gaps = 39/104 (37%)

Query: 31  VACLIVK-DGIVIGRGVTAYG-GCP------------------------------HAEVQ 58
           V  ++V  +  V G G      G P                              HAE  
Sbjct: 12  VGAVLVNANHEVRGTGYNGAPSGVPGCASAGACPRGQLSAVECAPNSDYANCVADHAERN 71

Query: 59  ALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           A+  A   E  GAT Y T EPC      P C   I   GIRRVV
Sbjct: 72  AIRHAPSAELAGATLYTTREPC------PACWTLIRAAGIRRVV 109


>gi|300779133|ref|ZP_07088991.1| dihydrofolate reductase family protein [Chryseobacterium gleum ATCC
           35910]
 gi|300504643|gb|EFK35783.1| dihydrofolate reductase family protein [Chryseobacterium gleum ATCC
           35910]
          Length = 177

 Score = 42.6 bits (99), Expect = 0.090,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           D+ +L+  L      ++  +GGA + +  + + L+D  I+    +++G G      ++G 
Sbjct: 94  DITELVNGLKSGEGKNIYCDGGAEIINELLKNELIDEFIISVIPVLLGSGTK--LFKDGR 151

Query: 334 LEKNFMCVRRDYF 346
            E+    +    F
Sbjct: 152 PEQALEFMTSKTF 164


>gi|108805662|ref|YP_645599.1| tRNA-adenosine deaminase [Rubrobacter xylanophilus DSM 9941]
 gi|108766905|gb|ABG05787.1| tRNA-adenosine deaminase [Rubrobacter xylanophilus DSM 9941]
          Length = 167

 Score = 42.6 bits (99), Expect = 0.090,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 51/150 (34%), Gaps = 22/150 (14%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
           D R M  ALR +R   G       V  ++ +   V+               HAE+ A+  
Sbjct: 18  DLRMMRLALRAAREAAGRGE--VPVGAVVARGEEVLALASNEREATGDPTAHAELLAIRR 75

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A     G    G T Y TLEPC      P CA       + R+V    DP    +G    
Sbjct: 76  AAAALGGWRLTGCTLYSTLEPC------PMCAGAAWAARLSRIVYAAPDPKAGYAGTLHN 129

Query: 118 -----WLSQKGIIVDRMMESEGKIFLHAYL 142
                 L+    ++  ++  E    L  + 
Sbjct: 130 TPSDRRLNHTASVLGGLLAQESATLLRDFF 159


>gi|116625310|ref|YP_827466.1| deaminase-reductase domain-containing protein [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116228472|gb|ABJ87181.1| bifunctional deaminase-reductase domain protein [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 186

 Score = 42.6 bits (99), Expect = 0.092,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 3/53 (5%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
            G  +A   I + L+D   L     ++G G   + +  G +            
Sbjct: 124 AGPTLAAHAIRAGLIDEYRLLVVPTILGGG---TRVVPGGVRIRLDLREERRL 173


>gi|322370974|ref|ZP_08045527.1| bifunctional deaminase-reductase domain protein [Haladaptatus
           paucihalophilus DX253]
 gi|320549409|gb|EFW91070.1| bifunctional deaminase-reductase domain protein [Haladaptatus
           paucihalophilus DX253]
          Length = 188

 Score = 42.6 bits (99), Expect = 0.092,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 10/107 (9%)

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
             PV + +  + P    A    NI  +  +   +   +      G   + + GG  +   
Sbjct: 77  EVPVWVFSSRELP----AVDGANIRFVQGNVAPVHADMVT-AADGKN-IWLVGGGDLVGQ 130

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-KNFMCVRRDYFG 347
           F +  L+D IIL  + + +  G   +PL    +       V    +G
Sbjct: 131 FHDHGLLDEIILSVAPVTLASG---APLLPRRIATPPLKLVDVKNYG 174


>gi|320012649|gb|ADW07499.1| CMP/dCMP deaminase zinc-binding protein [Streptomyces
          flavogriseus ATCC 33331]
          Length = 162

 Score = 42.6 bits (99), Expect = 0.092,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 11/100 (11%)

Query: 1  MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG---CPHAE 56
          M V + D R +   +  +   +           ++V  +G V   G     G     H E
Sbjct: 1  MVVDASDLRHLRRCVELAAEGLRAGDE--PFGSVLVDAEGEVRAEGRNRVAGGDRTRHPE 58

Query: 57 VQ-----ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQF 91
           +     A     EE   A  Y + E C     +      
Sbjct: 59 FELARWAADRMTPEERATAVVYTSGEHCPMCAAAHAWVGL 98


>gi|119509590|ref|ZP_01628737.1| pyruvate dehydrogenase E1 beta subunit [Nodularia spumigena
           CCY9414]
 gi|119465779|gb|EAW46669.1| pyruvate dehydrogenase E1 beta subunit [Nodularia spumigena
           CCY9414]
          Length = 327

 Score = 42.6 bits (99), Expect = 0.092,   Method: Composition-based stats.
 Identities = 60/325 (18%), Positives = 107/325 (32%), Gaps = 51/325 (15%)

Query: 57  VQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
             AL EA +E  AR AT +V  E   HYG S    + + +      V+     D  ++  
Sbjct: 7   FNALREAIDEEMARDATVFVLGEDVGHYGGSYKVTKDLYKKYGELRVL-----DTPIAEN 61

Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
               ++    +       EG       L       +   L+     +  I M   G   +
Sbjct: 62  SFTGMAVGAAMTGLRPIIEGMNMGFLLLAFNQISNNAGMLRYTSGGNFKIPMVIRGPGGV 121

Query: 175 TGFISKNQVHLLRAQSDAI----LVGIGT-----------VLADDPEL---TCRLNGLQE 216
              +       L A   A+    +V   T           +  D+P L      L  L+E
Sbjct: 122 GRQLGAEHSQRLEAYFQAVPGLKIVTCSTPYNAKGLLKSAIRDDNPVLFFEHVLLYNLKE 181

Query: 217 HSPMRIILDPHFKLSLD-SKIIKTALLAPVIIVTENDDPVLA--LAFRKKNINIIYCDCR 273
             P     +  + L LD +++++      ++  +     VL       K+  +    D  
Sbjct: 182 DLP-----EEEYFLPLDKAEVVRQGKDVTILTYSRMRHHVLQAVKTLEKQGFDPEVIDLI 236

Query: 274 DLKKL-LTILVG--RGVTSLLV--EG------GAAVAHSFINSRLVDSIILYRSQIV-IG 321
            LK L    +    R    +++  E       GA +  S IN RL D +    + ++ + 
Sbjct: 237 SLKPLDFDTIGASIRKTHRVIIVEECMRTGGIGAELTAS-INDRLFDELD---APVLRLS 292

Query: 322 EGGIPSPLEEGYLEKNFMCVRRDYF 346
              IP+P       +    V+ +  
Sbjct: 293 SQDIPTPYNGNL--ERLTIVQPEQI 315


>gi|70699875|gb|AAZ06844.1| putative dihydrofolate reductase [Microbacterium arborescens]
          Length = 204

 Score = 42.6 bits (99), Expect = 0.092,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 10/112 (8%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P  + T  + P      R    ++ +        L  I    G   + V GG  +A  F 
Sbjct: 78  PTFVFTSRELP------RPTGADVRFVSGPVSTVLPRIRQAAGDHDVWVVGGGDLAGQFF 131

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR-DYFGSDVCLEY 354
           ++  +D I +  + + +G G   +P+    +E + + +R  +  G+   L Y
Sbjct: 132 DADALDQIAVSVAPVTLGGG---APVLPRRIESDRLSLRSAEQVGAFARLVY 180


>gi|218888180|ref|YP_002437501.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218759134|gb|ACL10033.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 182

 Score = 42.6 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 44/155 (28%), Gaps = 43/155 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
            +   FM      +      T T   V  + VKD  ++  G                   
Sbjct: 8   PWPQYFMEITYLVAERS---TCTRRKVGAIAVKDKRILATGYNGAPSGVAHCLDVGCLRT 64

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE   + +A   G    G+  Y T +PC        C + +I 
Sbjct: 65  QLGVPSGQRHEICRGLHAEQNVIVQAAIHGISLAGSEIYCTTQPCLI------CTKMLIN 118

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           CG+  +      PD          L + G+  + +
Sbjct: 119 CGVTAIRYAESYPDQLAE----DMLRESGVRYEVL 149


>gi|284045786|ref|YP_003396126.1| bifunctional deaminase-reductase domain protein [Conexibacter
           woesei DSM 14684]
 gi|283950007|gb|ADB52751.1| bifunctional deaminase-reductase domain protein [Conexibacter
           woesei DSM 14684]
          Length = 199

 Score = 42.6 bits (99), Expect = 0.094,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 6/60 (10%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG-----GIP-SPLEEGYLEKNFMCVRRDYFG 347
           GGAA  + ++ + L+D + L+ + +++G G     G P + LE     +    V    +G
Sbjct: 137 GGAATVNQYLAAGLIDELRLHVAPVLLGAGERLLDGAPNAQLELLGEPRGTGLVTHLRYG 196


>gi|237722494|ref|ZP_04552975.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229448304|gb|EEO54095.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 150

 Score = 42.6 bits (99), Expect = 0.094,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           LLV GG  +  + I + L+DS+ LY   +++G+G             N+         ++
Sbjct: 83  LLV-GGGKLLTTLIQAGLLDSLTLYTIPVMLGKG---ISFIGETFGSNWYLESSKIIDNN 138

Query: 350 VCL 352
           + L
Sbjct: 139 ILL 141


>gi|168178955|ref|ZP_02613619.1| riboflavin biosynthesis protein RibD C- domain protein [Clostridium
           botulinum NCTC 2916]
 gi|226950812|ref|YP_002805903.1| riboflavin biosynthesis protein RibD C- domain-containing protein
           [Clostridium botulinum A2 str. Kyoto]
 gi|182670101|gb|EDT82077.1| riboflavin biosynthesis protein RibD C- domain protein [Clostridium
           botulinum NCTC 2916]
 gi|226840870|gb|ACO83536.1| riboflavin biosynthesis protein RibD C- domain protein [Clostridium
           botulinum A2 str. Kyoto]
          Length = 173

 Score = 42.6 bits (99), Expect = 0.094,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 68/206 (33%), Gaps = 38/206 (18%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
           I + +A+S D  I     G   I G          R++ +  L GI  V+       C  
Sbjct: 5   IIMNLAISIDGYIADESGGFDWIVGQGDTAIDTAERSEFEEFLAGIDIVV---MGKNCYE 61

Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD 271
            G  +  P                         V + T           +K++   I+  
Sbjct: 62  QGFAKEYP----------------------TKTVYVATSE---------KKEDEGNIHFI 90

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           C D+  +       G   + + GG A+   F+ + ++D  I+     ++G+G    PL  
Sbjct: 91  CGDIVSIFEKEKNSGKN-IFLFGGGALIDHFVKANVIDEYIVGIIPTILGKGR---PLFL 146

Query: 332 GYLEKNFMCVRRDYFGSDVCLEYIGK 357
           G      + + +    + + + Y  K
Sbjct: 147 GNNPTIQLHLDKYTISNGIAVFYYSK 172


>gi|307320960|ref|ZP_07600368.1| bifunctional deaminase-reductase domain protein [Sinorhizobium
           meliloti AK83]
 gi|306893444|gb|EFN24222.1| bifunctional deaminase-reductase domain protein [Sinorhizobium
           meliloti AK83]
          Length = 174

 Score = 42.6 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 23/51 (45%)

Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            D+  L++ L       + + GG  +  SF+    +D I +Y    ++G G
Sbjct: 92  NDVDALISELRAFDDGDVWMLGGGQLQMSFMQRGALDEIEIYVIPEILGSG 142


>gi|302517944|ref|ZP_07270286.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sp. SPB78]
 gi|302426839|gb|EFK98654.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sp. SPB78]
          Length = 295

 Score = 42.6 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-KNFMCVRRDYF-GSDVC 351
           GGA +A + + + L+D  ++    +++G G   +P         N   V    F G  V 
Sbjct: 125 GGATLAGAAMRAGLIDEYVIAAHPVLVGGG---TPFFTALDSWVNLDLVETRTFPGGVVL 181

Query: 352 LEY 354
             Y
Sbjct: 182 SRY 184


>gi|145596240|ref|YP_001160537.1| deaminase-reductase domain-containing protein [Salinispora tropica
           CNB-440]
 gi|145305577|gb|ABP56159.1| bifunctional deaminase-reductase domain protein [Salinispora
           tropica CNB-440]
          Length = 195

 Score = 42.6 bits (99), Expect = 0.097,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           D    +  L  R    + + GG  +A   ++   +D ++L  + +V G  GIP  ++ G+
Sbjct: 110 DPTAFVRQLRARPGRDIWLCGGGQLAGQLLDE--IDELVLKLNPVVAGS-GIP-LVDRGF 165

Query: 334 LEKNFMCVRRDYFGSDVCL 352
                +      F S V +
Sbjct: 166 APHRLVLTSTRPFASGVVV 184


>gi|156186022|gb|ABU55329.1| cytidine and deoxycytidylate deaminase family protein
           [Callosobruchus chinensis]
          Length = 71

 Score = 42.6 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 11/61 (18%)

Query: 52  CPHAEVQALEEAGEEARGATA-----YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
             HAE+ A+++  E    +T      YVTLEPC      P CAQ I   GI+R      +
Sbjct: 17  TAHAEMLAIKQECELLSTSTLYDSDIYVTLEPC------PMCAQAISFAGIKRFYFGAYN 70

Query: 107 P 107
           P
Sbjct: 71  P 71


>gi|304373353|ref|YP_003856562.1| deoxycytidylate deaminase [Mycoplasma hyorhinis HUB-1]
 gi|304309544|gb|ADM22024.1| deoxycytidylate deaminase [Mycoplasma hyorhinis HUB-1]
          Length = 162

 Score = 42.6 bits (99), Expect = 0.100,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 37/121 (30%), Gaps = 33/121 (27%)

Query: 15  LRFSR-WHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP------------------- 53
           L  ++         N  V   IV K   V+G G                           
Sbjct: 17  LALAKISAKRSKDPNTQVGACIVSKQNRVLGIGYNGMPKGNDVDFPWSKDSNKASEVKYS 76

Query: 54  ---HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
              HAE+ A+  +         A  YV+L PCS+      CA+ I + GI  +    D  
Sbjct: 77  YVIHAEINAILNSILPLNTVEDAKLYVSLFPCSN------CAKVIAQTGITTIYFDDDKY 130

Query: 108 D 108
            
Sbjct: 131 H 131


>gi|297189938|ref|ZP_06907336.1| deaminase-reductase domain-containing protein [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197718593|gb|EDY62501.1| deaminase-reductase domain-containing protein [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 205

 Score = 42.6 bits (99), Expect = 0.100,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 7/84 (8%)

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVA 299
             PV ++T    P   L            D     L++   +  GR V    + GGA   
Sbjct: 93  RTPVFVLTHR--PRRTLVKEGGTTFTFVTDGIHSALEQAKAVCGGRNVD---IAGGARTV 147

Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323
             ++ + L+D + L+   ++ G G
Sbjct: 148 QQYLRAGLIDELQLHVVPVLFGAG 171


>gi|145223818|ref|YP_001134496.1| deaminase-reductase domain-containing protein [Mycobacterium gilvum
           PYR-GCK]
 gi|145216304|gb|ABP45708.1| bifunctional deaminase-reductase domain protein [Mycobacterium
           gilvum PYR-GCK]
          Length = 199

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 6/90 (6%)

Query: 270 CDCRDLKKLLTILVGR--GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
            +  D  +++T L     G   +    GA +A   + + LVD   +  S + +G G    
Sbjct: 112 LERGDPVEVVTKLKAETDGQLEV---AGATLAAPIVQAGLVDEYRIVVSPVAVGGGLPFF 168

Query: 328 PLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           P    ++    +   R + G  V L Y  +
Sbjct: 169 PNLPSWISLRLLE-NRTFPGGTVLLRYEAR 197


>gi|170290377|ref|YP_001737193.1| carbon-monoxide dehydrogenase, catalytic subunit [Candidatus
           Korarchaeum cryptofilum OPF8]
 gi|170174457|gb|ACB07510.1| carbon-monoxide dehydrogenase, catalytic subunit [Candidatus
           Korarchaeum cryptofilum OPF8]
          Length = 640

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 2/93 (2%)

Query: 34  LIVKDGIVIGRGVTAYGGCPHA--EVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQF 91
           LI  D +V+G G  A     H   + +A E AG   R     + + P  H G    C++ 
Sbjct: 477 LIANDILVVGTGCWAIAMSKHGFFKPEAAEMAGPGLREVCKALGIPPALHMGSCVDCSRM 536

Query: 92  IIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           +I        + VD  D+  +G   +W S+K +
Sbjct: 537 LIALAALADHLGVDISDLPAAGSAPEWYSEKAV 569


>gi|331248562|ref|XP_003336904.1| hypothetical protein PGTG_18310 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309315894|gb|EFP92485.1| hypothetical protein PGTG_18310 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 327

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 33/114 (28%)

Query: 30  SVACLIVK-DGIVIGRGVTAYGGCPH-----------------AEVQALEEAG-EEARGA 70
            V  ++V  D  V+  G        H                 AE  AL EAG +    +
Sbjct: 222 RVGAVLVTVDKRVLSTGYNGTPRGMHTVVAGCGVNLEECLCLHAEENALLEAGRDRITNS 281

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           T Y               +  I++CG++ V+        +++ +      + GI
Sbjct: 282 TLYCN-----------TGSIKIVQCGVKEVIYSQSYSMDQLAQKIFL---EAGI 321


>gi|148553413|ref|YP_001260995.1| deaminase-reductase domain-containing protein [Sphingomonas
           wittichii RW1]
 gi|148498603|gb|ABQ66857.1| bifunctional deaminase-reductase domain protein [Sphingomonas
           wittichii RW1]
          Length = 176

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 10/84 (11%)

Query: 276 KKLLTILVGR--GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           + ++  L  R  GV  +    G  +AH   +  LVD   LY   +V+G G    P   G 
Sbjct: 99  EAVVRDLKARLDGVIEV---SGPELAHGLADLGLVDEYRLYVHPVVLGGGK---PFFAG- 151

Query: 334 LEKNFMCVRRDYFGSDVC-LEYIG 356
                  V  D  G  V  L Y+ 
Sbjct: 152 PRSRLRLVASDRIGESVIRLSYVP 175


>gi|325284533|ref|YP_004257072.1| bifunctional deaminase-reductase domain-containing protein
           [Deinococcus proteolyticus MRP]
 gi|324316707|gb|ADY27818.1| bifunctional deaminase-reductase domain protein [Deinococcus
           proteolyticus MRP]
          Length = 187

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 59/210 (28%), Gaps = 56/210 (26%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFIS----KNQVHLLRAQSDAILVGIGTVLADDP 205
            H    +A S D  I         +    +            A+ DA+++G  T      
Sbjct: 1   MHTAAFLAASLDGFIAREDGALDWLPQPEAEGEDYGYTEFF-ARIDALVMGRRTFE---- 55

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
                            ++                   PV++++    P           
Sbjct: 56  -----------------VVSGFTPWPY--------GDKPVVVLSRTLTPADLPVHLP--- 87

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             +      L +LL  L   GV  +  +GG  V   FI +  ++ + L    +++G G  
Sbjct: 88  --LRLHAGPLLELLRQLEAEGVRRVYADGG-QVVQEFIRAGRLNELTLTTVPVLLGRGR- 143

Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
             PL                 G DV LE +
Sbjct: 144 --PLFGA-------------VGEDVPLELL 158


>gi|323450336|gb|EGB06218.1| hypothetical protein AURANDRAFT_16078 [Aureococcus anophagefferens]
          Length = 96

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 17/105 (16%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG-----VTAYGGCPHAEVQA 59
           + D  ++  A   +R           + C +V+DG V+                HAE  A
Sbjct: 1   TADENYLDLAYLLARNSEAKDG---HMGCCVVRDGAVVATTINCGLFGDARSDVHAEAAA 57

Query: 60  LEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           + +    G    GA+ YVT  PC      P C + +   G+ RVV
Sbjct: 58  VSDCARRGVPLGGASIYVTRAPC------PRCYKLVAVAGVCRVV 96


>gi|269793447|ref|YP_003312902.1| dihydrofolate reductase [Sanguibacter keddieii DSM 10542]
 gi|269095632|gb|ACZ20068.1| dihydrofolate reductase [Sanguibacter keddieii DSM 10542]
          Length = 223

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 3/86 (3%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                 PV+++T    P L +A       +       L+    +     V    + GGA+
Sbjct: 101 DPPFHTPVVVLTHRPRPTLEMAGGTTFHFVDAGPAEALELARDLAGDLDVR---IGGGAS 157

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323
               F+ + LVD + +    +V+G G
Sbjct: 158 TVRQFLAADLVDEMHVALVPVVLGRG 183


>gi|284034235|ref|YP_003384166.1| bifunctional deaminase-reductase domain-containing protein
           [Kribbella flavida DSM 17836]
 gi|283813528|gb|ADB35367.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
           DSM 17836]
          Length = 174

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           R L  L+  L  RG   +  +GG  V  +F+ + L++ + +    +++G G
Sbjct: 91  RTLDGLVETLNDRGAQRVYADGG-RVVQTFLRAGLLNELTITTVPVLLGAG 140


>gi|322386164|ref|ZP_08059797.1| dihydrofolate reductase [Streptococcus cristatus ATCC 51100]
 gi|321269744|gb|EFX52671.1| dihydrofolate reductase [Streptococcus cristatus ATCC 51100]
          Length = 173

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 285 RGVT---SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF-MC 340
           R +    ++ V GG ++    +++ L + +I+  + +++G+G    PL      + F   
Sbjct: 97  RQIDKGKNVFVIGGNSLVGPLLDADLFNHLIIQIAPLILGKG---VPLFTQEEGQRFYQL 153

Query: 341 VRRDYFGSDVCLEYIGKN 358
                FG    L +  K+
Sbjct: 154 DSLRQFGPFAELVFSRKS 171


>gi|269914588|pdb|3KGY|A Chain A, Crystal Structure Of Putative Dihydrofolate Reductase
           (Yp_001636057.1) From Chloroflexus Aurantiacus J-10-Fl
           At 1.50 A Resolution
 gi|269914589|pdb|3KGY|B Chain B, Crystal Structure Of Putative Dihydrofolate Reductase
           (Yp_001636057.1) From Chloroflexus Aurantiacus J-10-Fl
           At 1.50 A Resolution
          Length = 231

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 3/82 (3%)

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
             PV ++T                 +     + L         R +    + GGA V   
Sbjct: 120 HTPVYVLTHERRNPWVRPGGTTFYFVNDGPEQALALAREAAGERDIR---ISGGANVIQQ 176

Query: 302 FINSRLVDSIILYRSQIVIGEG 323
           ++N  LVD + +    ++ G G
Sbjct: 177 YLNLGLVDELEIALIPVIFGGG 198


>gi|54026756|ref|YP_120998.1| hypothetical protein nfa47820 [Nocardia farcinica IFM 10152]
 gi|54018264|dbj|BAD59634.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 187

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 8/82 (9%)

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
           + +    +L++++      GV  +    G   A   I + LV+    +    ++G G   
Sbjct: 104 VPHLSLDELRRIVD--AAPGVVEIF---GPTTAAEAIRAGLVEEFRFFVVPKLVGGGVRA 158

Query: 327 SPLEEGYLEKNFMCVRRDYFGS 348
            P     +  +   V    F +
Sbjct: 159 LP---DGVHLDVTLVEHRIFDN 177


>gi|316978726|gb|EFV61670.1| serine/threonine-protein phosphatase PP1 [Trichinella spiralis]
          Length = 537

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 42/147 (28%), Gaps = 46/147 (31%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRG----------VTA-------- 48
           R+M   +  ++   G       V C IV  K G VI               A        
Sbjct: 143 RYMRMCIDSAKKVKGQVG----VGCAIVEPKTGTVISVANNSLASENPIQHAVMCAIDLV 198

Query: 49  ---YGGCP---------HAEVQALE----EAGEEARGATAYVTLEPCSHYGRSPPCAQFI 92
               GG P         HAE   L            G   YVT EPC+       C+  +
Sbjct: 199 AEFQGGKPLSRQCSGVLHAEKDQLSPDSGSCFYLCTGFDCYVTREPCAM------CSMAL 252

Query: 93  IECGIRRVVVCVDDPDVRVSGRGLQWL 119
           +   IRRV          +    +  +
Sbjct: 253 LHSRIRRVFYGYPVNHGALGSAAMIHM 279


>gi|108757462|ref|YP_629509.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Myxococcus xanthus DK 1622]
 gi|108461342|gb|ABF86527.1| RibD domain protein [Myxococcus xanthus DK 1622]
          Length = 183

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
             L  +    + + GG A A   +   LVD ++L  + +++G G + +   +  ++ +  
Sbjct: 102 RRLKAQEGGDIYLSGGGAFAGLLLAEGLVDEVLLKMNPLILGSGILLASSLKQVVDLDLK 161

Query: 340 CVRRDYFGSDVCLEY 354
             +    G  V L Y
Sbjct: 162 STKVYANGV-VLLRY 175


>gi|326801452|ref|YP_004319271.1| bifunctional deaminase-reductase domain protein [Sphingobacterium
           sp. 21]
 gi|326552216|gb|ADZ80601.1| bifunctional deaminase-reductase domain protein [Sphingobacterium
           sp. 21]
          Length = 205

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
             L       +L+ G  ++A   +N  LVD + L+ + I++G G
Sbjct: 108 HRLKQETHGDILILGSGSIASQLLNLDLVDELHLFINPIILGSG 151


>gi|156186024|gb|ABU55330.1| cytidine and deoxycytidylate deaminase family protein
           [Callosobruchus chinensis]
          Length = 71

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 11/61 (18%)

Query: 52  CPHAEVQALEEAGEEARGATA-----YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
             HAE+ A+++  E    +T      YVTLEPC      P CAQ I    I+R+     +
Sbjct: 17  TAHAEMFAIKQECELLSTSTLYDSDIYVTLEPC------PMCAQAISFARIKRLYFGAYN 70

Query: 107 P 107
           P
Sbjct: 71  P 71


>gi|309778917|ref|ZP_07673687.1| riboflavin biosynthesis protein RibD C- domain protein [Ralstonia
           sp. 5_7_47FAA]
 gi|308922264|gb|EFP67891.1| riboflavin biosynthesis protein RibD C- domain protein [Ralstonia
           sp. 5_7_47FAA]
          Length = 220

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
           GG      ++   L+D + +  S +++G G    PL EG
Sbjct: 153 GGPGTIRQYLREGLIDELHIAISPVLLGRGE---PLFEG 188


>gi|319781928|ref|YP_004141404.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317167816|gb|ADV11354.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 176

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 6/86 (6%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D++ ++  L    V  + V  G  +A S  +  LVD+  LY    V+G G    P   
Sbjct: 95  ADDVEAVIRGLKAELVGEISV-SGPGLARSLTDLGLVDAYQLYLHPFVLGHGK---PFFA 150

Query: 332 GYLEKNFMCVRRDYFGSDVC-LEYIG 356
           G        V  D  G DV  L Y+ 
Sbjct: 151 G-PRPPLRFVASDLIGDDVIRLTYVP 175


>gi|255079548|ref|XP_002503354.1| predicted protein [Micromonas sp. RCC299]
 gi|226518620|gb|ACO64612.1| predicted protein [Micromonas sp. RCC299]
          Length = 287

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 50/183 (27%), Gaps = 31/183 (16%)

Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH--LLRAQSDAILVGIGTVL 201
                R    + I V+ D  I         +     ++           DA+L+G  T  
Sbjct: 94  YMSAPRPETVVYIGVTMDGYIARPDGSLDFLPQPEGEDDFGFGAFLNTVDAVLMGRRT-- 151

Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
                                  D   +  +  K+        VI+V+            
Sbjct: 152 ----------------------FDQVAEFVVRDKVPWPYEGKRVIVVSRTMTQKDVPEPL 189

Query: 262 KKNINIIYCDCRDLKKLLTILVGRGV-TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
              + +     +   + L  L   G    + V+GG     S +    VD ++L    + I
Sbjct: 190 SSKVTVT---AQSPSEALKALGKTGFTRRVYVDGG-MTIRSLLEEDQVDEMVLTSVPVTI 245

Query: 321 GEG 323
           G G
Sbjct: 246 GRG 248


>gi|25028230|ref|NP_738284.1| hypothetical protein CE1674 [Corynebacterium efficiens YS-314]
 gi|259507289|ref|ZP_05750189.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|23493514|dbj|BAC18484.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259165093|gb|EEW49647.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 67

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GGA +A + + + L+D  +L    +++G G
Sbjct: 4   GGATLAGAAMQAGLIDEYVLVTHPVLVGGG 33


>gi|145300325|ref|YP_001143166.1| hypothetical protein ASA_3449 [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853097|gb|ABO91418.1| conserved hypothetical protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 151

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           +L+ +L  L  +G   + ++GG  +    + + LVD++ L    +++G+G
Sbjct: 67  ELRLVLAALWDQGARHVYLDGG-NLVRQALQADLVDTLTLSSVPVLLGKG 115


>gi|257067810|ref|YP_003154065.1| cytosine/adenosine deaminase [Brachybacterium faecium DSM 4810]
 gi|256558628|gb|ACU84475.1| cytosine/adenosine deaminase [Brachybacterium faecium DSM 4810]
          Length = 158

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 11/96 (11%)

Query: 4  SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQA 59
          S   +  +  A+  +   V      P  A ++  DG  +  G      A+    HAEV+A
Sbjct: 3  SPAASEHLHRAVELAVASVAR-GGGPFGAVVLTADGTAV-EGANRVTAAHDPTAHAEVEA 60

Query: 60 LEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQ 90
          + EA       E RGA  Y + EPC     S   A+
Sbjct: 61 IREACRRSGSHELRGAVLYASCEPCPMCLASALWAR 96


>gi|302869129|ref|YP_003837766.1| bifunctional deaminase-reductase domain-containing protein
           [Micromonospora aurantiaca ATCC 27029]
 gi|302571988|gb|ADL48190.1| bifunctional deaminase-reductase domain protein [Micromonospora
           aurantiaca ATCC 27029]
          Length = 191

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 34/85 (40%), Gaps = 5/85 (5%)

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
              L+  L  R    + + GG  +A   ++   +D +++  + +++G G     ++ G+ 
Sbjct: 111 PATLVRELKTRPGRDIWLCGGGQLAGQLVDE--IDELVVKLNPVIVGSGIK--LVDSGFD 166

Query: 335 EKNFMCVRRDYFGSD-VCLEYIGKN 358
            +         F +  V L Y   +
Sbjct: 167 PRRLTLTSARPFDAGVVVLRYTRND 191


>gi|332359943|gb|EGJ37757.1| dihydrofolate reductase [Streptococcus sanguinis SK1056]
          Length = 173

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           + V GG ++    +++ L D +I+  + +++G  G+P   +E
Sbjct: 105 VFVIGGNSLVGPLLDADLFDHLIIQIAPLILG-KGVPLFTQE 145


>gi|229822239|ref|YP_002883765.1| bifunctional deaminase-reductase domain protein [Beutenbergia
           cavernae DSM 12333]
 gi|229568152|gb|ACQ82003.1| bifunctional deaminase-reductase domain protein [Beutenbergia
           cavernae DSM 12333]
          Length = 201

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           GGA+    F+++RL+D + +  + +++G G     + +G L   +  V  +  G  V   
Sbjct: 140 GGASTIRQFLDARLLDELNVAIAPVLLGAGER---IFDGPLPAGYGVVSSEP-GEAVLHV 195

Query: 354 YIGK 357
            IG+
Sbjct: 196 VIGR 199


>gi|294499991|ref|YP_003563691.1| riboflavin biosynthesis protein RibD C-terminal domain-containing
           protein [Bacillus megaterium QM B1551]
 gi|294349928|gb|ADE70257.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Bacillus megaterium QM B1551]
          Length = 172

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
           + + GGA +   F+ ++ VD  I+    +++G  GIP   + G  E N        +G 
Sbjct: 107 IWLVGGADILADFLTAKRVDEFIISIIPVLLGA-GIP-LFKRGIPEINLKLTHMKQYGQ 163


>gi|134096905|ref|YP_001102566.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Saccharopolyspora erythraea NRRL 2338]
 gi|291006653|ref|ZP_06564626.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133909528|emb|CAL99640.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 159

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 18/114 (15%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----TAYGGCPHAE- 56
           ++  D R +  A+  S               L+V  DG V+   V    T      H E 
Sbjct: 1   MTDDDLRHLRRAIELSARARESGDE--PFGSLLVGPDGAVLAEDVNTVRTDRDISAHPEL 58

Query: 57  ---VQALEEAGEEARGA-TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
              V A          A T Y + E C+       C+  ++  G+ R+V  +D 
Sbjct: 59  KLAVWAARHLDPATSAATTMYTSCENCAM------CSAAMVSSGVGRLVFALDG 106


>gi|238854305|ref|ZP_04644649.1| riboflavin biosynthesis protein ribBA [Lactobacillus gasseri
          202-4]
 gi|282851977|ref|ZP_06261335.1| conserved domain protein [Lactobacillus gasseri 224-1]
 gi|311110735|ref|ZP_07712132.1| 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase
          II [Lactobacillus gasseri MV-22]
 gi|238833116|gb|EEQ25409.1| riboflavin biosynthesis protein ribBA [Lactobacillus gasseri
          202-4]
 gi|282556737|gb|EFB62341.1| conserved domain protein [Lactobacillus gasseri 224-1]
 gi|311065889|gb|EFQ46229.1| 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase
          II [Lactobacillus gasseri MV-22]
          Length = 92

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 4/37 (10%)

Query: 5  SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIV 41
            D  +M+ AL+ ++     T     V  +I K+  +
Sbjct: 2  EKDQYYMNLALQEAKKGRFQT----LVGAVIFKELKI 34


>gi|160898463|ref|YP_001564045.1| deaminase-reductase domain-containing protein [Delftia acidovorans
           SPH-1]
 gi|160364047|gb|ABX35660.1| bifunctional deaminase-reductase domain protein [Delftia
           acidovorans SPH-1]
          Length = 186

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 8/105 (7%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P  + +    P         +I  +  D R +   +      G  +L + GG  +A  F 
Sbjct: 76  PAWVFSSRTLP----GIPGADIRFVSGDVRAVHAQMQ--AAAGGRNLWIMGGGDLAGQFY 129

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
           ++ L+D +IL      +G G          L      +     G 
Sbjct: 130 DAGLLDEMILSVGSATLGRG--KPLFPRRVLHPVLRLLSVRQIGE 172


>gi|206562263|ref|YP_002233026.1| guanine deaminase [Burkholderia cenocepacia J2315]
 gi|198038303|emb|CAR54258.1| guanine deaminase [Burkholderia cenocepacia J2315]
          Length = 155

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 15/88 (17%)

Query: 30  SVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
             A +IV+DG ++               HAE+ A+ +A      E       Y+   PC 
Sbjct: 21  PFATVIVRDGEIVAESPNLVAQTSDPTAHAEILAVRDACRTLGTEHLTDCEIYILASPC- 79

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                P C   +  C  +RV+      D
Sbjct: 80  -----PMCLGSLYYCSPKRVIYITTRED 102


>gi|258654727|ref|YP_003203883.1| bifunctional deaminase-reductase domain-containing protein
           [Nakamurella multipartita DSM 44233]
 gi|258557952|gb|ACV80894.1| bifunctional deaminase-reductase domain protein [Nakamurella
           multipartita DSM 44233]
          Length = 193

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 3/52 (5%)

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
           G  +A   I + LVD   L+ +  V+G G   +      +      V +  F
Sbjct: 126 GPTLAAQAIKAGLVDEYYLFLTSTVVGGG---TRFFPDGVRLELDLVEQRAF 174


>gi|330469529|ref|YP_004407272.1| bifunctional deaminase-reductase domain-containing protein
           [Verrucosispora maris AB-18-032]
 gi|328812500|gb|AEB46672.1| bifunctional deaminase-reductase domain protein [Verrucosispora
           maris AB-18-032]
          Length = 226

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           V GG  +    + + L+D   L+ + +V+G G
Sbjct: 145 VSGGGTLFRQVLRAGLLDEFELHIAPVVLGTG 176


>gi|271968200|ref|YP_003342396.1| dihydrofolate reductase [Streptosporangium roseum DSM 43021]
 gi|270511375|gb|ACZ89653.1| dihydrofolate reductase [Streptosporangium roseum DSM 43021]
          Length = 178

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 44/119 (36%), Gaps = 6/119 (5%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
            T  LAP+I        V +    K   N       D+ + +  L  R  T + V GGA 
Sbjct: 65  STDRLAPLI--NNATKIVFSGTLEKVEWNNSRLATGDVTEEIAQLKRRPGTDIFVPGGAR 122

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
            A S     LVD   L    IV+G G    PL    ++   +  R    G+ V L Y  
Sbjct: 123 FAQSVSRLGLVDEYRLIVHPIVLGSG---LPLFTDPIDLKLLSSREFSTGA-VALTYRR 177


>gi|149277396|ref|ZP_01883537.1| possible reductase [Pedobacter sp. BAL39]
 gi|149231629|gb|EDM37007.1| possible reductase [Pedobacter sp. BAL39]
          Length = 191

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
             G   +L  G  ++A +     LVD  IL    +++G G   +   +         +  
Sbjct: 121 EEGKNIVLW-GSLSLASALTMEGLVDEFILMVCPVMLGGGR--TVFPQRSEASRLQLLDS 177

Query: 344 DYFGSDVCL 352
             FG+ V +
Sbjct: 178 RTFGNGVVM 186


>gi|332717242|ref|YP_004444708.1| probable dihydrofolate reductase [Agrobacterium sp. H13-3]
 gi|325063927|gb|ADY67617.1| probable dihydrofolate reductase [Agrobacterium sp. H13-3]
          Length = 175

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 9/98 (9%)

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
               VI+VT             ++         D+  L+  L       + + GG  +  
Sbjct: 69  GDQRVIVVTSRPIEGPKGPLEARS---------DVGSLIEELRALDDGDVWMLGGGKLQM 119

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
           +F+    +D I +Y    ++G G    PL         
Sbjct: 120 AFLERDALDEIEIYVIPEILGSGEPLFPLTGHRASPTL 157


>gi|291300821|ref|YP_003512099.1| bifunctional deaminase-reductase domain-containing protein
           [Stackebrandtia nassauensis DSM 44728]
 gi|290570041|gb|ADD43006.1| bifunctional deaminase-reductase domain protein [Stackebrandtia
           nassauensis DSM 44728]
          Length = 185

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 66/204 (32%), Gaps = 36/204 (17%)

Query: 154 LKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213
              ++S D  +         ++   S      L  +    +   G VL           G
Sbjct: 15  WHFSMSLDGFVAGPNHSMSWLSRTTSSRPG--LVEEY---MSTTGAVLGGRSGWDATPEG 69

Query: 214 LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR 273
           ++ ++                         P+ I+T + +       +++ + ++ CD  
Sbjct: 70  VRPYN---------------------DWQGPIFILTHHPEDAR----KEEGVTLLNCDVA 104

Query: 274 DLKKL-LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
           +  ++ L    G+ +  +       +    +   L+D I L+ S +++G+ G+      G
Sbjct: 105 EAVRIGLEAAGGKNL-EVFS---PTIGAQLLERGLIDEIDLHISPVLLGD-GVRLFHNPG 159

Query: 333 YLEKNFMCVRRDYFGSDVCLEYIG 356
               +   V  D    ++ + Y  
Sbjct: 160 GQPVHLNLVGADEPTVEINVRYRP 183


>gi|226305935|ref|YP_002765895.1| hypothetical protein RER_24480 [Rhodococcus erythropolis PR4]
 gi|226185052|dbj|BAH33156.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 191

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 4/85 (4%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           D + ++  L       + + GG  +A   +    +D +I+ R  +V G  GIP  +   Y
Sbjct: 110 DPRAVVRSLKEEEGQDIWLCGGGTLAGELLPE--IDELIVKRYPVVAGA-GIPM-IRGNY 165

Query: 334 LEKNFMCVRRDYFGSDVCLEYIGKN 358
               F     +       + ++ +N
Sbjct: 166 APTLFTPTATESLDDGASITWLKRN 190


>gi|261406959|ref|YP_003243200.1| bifunctional deaminase-reductase domain-containing protein
           [Paenibacillus sp. Y412MC10]
 gi|261283422|gb|ACX65393.1| bifunctional deaminase-reductase domain protein [Paenibacillus sp.
           Y412MC10]
          Length = 178

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-L 352
            G  +AHS     LVD   LY   +V+G G    P   G        V  D  G  V  L
Sbjct: 118 AGPELAHSLTELGLVDEYRLYLHPVVLGHGK---PFFAG-PRPPLRLVASDRIGEKVIRL 173

Query: 353 EYIG 356
            Y+ 
Sbjct: 174 TYVP 177


>gi|310799415|gb|EFQ34308.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Glomerella graminicola M1.001]
          Length = 247

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 32/128 (25%), Gaps = 45/128 (35%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPS----VACLIVKD-----GIVIGRGVTA----YGGCPH 54
           A +M  A         L   NP        ++V       G ++  G            H
Sbjct: 62  AYWMRQA--------NLALPNPCPFAAFGSVVVNHTAAGLGELVCTGANKNSVTGNPTFH 113

Query: 55  AEVQAL------------------EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
            E+ A+                   EA       T Y   E C      P CA  I   G
Sbjct: 114 GEMVAINNCSAIFVDPQGPFKMTPAEALAAFADLTLYTNAESC------PMCASAIRWAG 167

Query: 97  IRRVVVCV 104
            +  V   
Sbjct: 168 FKEYVYGT 175


>gi|319401871|ref|NP_001187388.1| tRNA-specific adenosine deaminase-like protein 3 [Ictalurus
           punctatus]
 gi|308322883|gb|ADO28579.1| tRNA-specific adenosine deaminase-like protein 3 [Ictalurus
           punctatus]
          Length = 353

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 49/178 (27%), Gaps = 57/178 (32%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGV--TAYGGCPHA-----EVQ 58
             +M+ A+  +R          +V  +IV  K G +I  G   T      HA     ++ 
Sbjct: 179 QEYMTTAVEAARSGREEGMD--AVGAVIVDPKSGQIIAVGHDLTQDHPLHHAVMVCIDLV 236

Query: 59  ALEE-----------------------AGEE-------------ARGATAYVTLEPCSHY 82
           A  +                       AG                 G   YVT EPC   
Sbjct: 237 AWAQGGGVYTYEKHPACRYTASDPQLYAGHSETSGSEENVQPYICTGYELYVTREPC--- 293

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPD----VRVSGRGLQWLSQKGIIVDRMMESEGKI 136
                CA  ++   I  V      PD     +      + L+    +   +M    + 
Sbjct: 294 ---VMCAMALVHSRISSVFYGTASPDGALGTKYKIHCQKELNHHFDVYKGVMRQACEE 348


>gi|255631480|gb|ACU16107.1| unknown [Glycine max]
          Length = 156

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 15/86 (17%)

Query: 33  CLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSHYG 83
            +IV +  ++ R             HAEV  + +A E+           Y + EPC    
Sbjct: 26  AIIVCNDEIVARCHNMVLRNTDPTAHAEVTVIRKACEKLNQIELSDCEIYASCEPC---- 81

Query: 84  RSPPCAQFIIECGIRRVVVCVDDPDV 109
             P C   I    ++R+V        
Sbjct: 82  --PMCFGAIHLSRVKRLVYGAKAEAA 105


>gi|226359947|ref|YP_002777725.1| hypothetical protein ROP_05330 [Rhodococcus opacus B4]
 gi|226238432|dbj|BAH48780.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 192

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 54/175 (30%), Gaps = 38/175 (21%)

Query: 184 HLLRAQSDA---ILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
           H L A  D+   ++ G  T  A    L       +   P    +     L   + ++ T 
Sbjct: 38  HRL-ALYDSEQRMIFGANTYRAFAQMLASSTEESEVRDPW---VTRMRSLP--ATVVSTT 91

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI-----LVGRGVTSLLVEGG 295
           L  P                   +  I+  D  D+   L       L   G  S      
Sbjct: 92  LEGP---------------LDWPDATIVSGDAVDIVARLKQESDVPLRSHGSLS------ 130

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
             +  + + + LVD + +    ++ G+ G   P+ +G  + +   +       D+
Sbjct: 131 --MNRALMAAGLVDRLQVTLFPVITGKTG-DDPIFQGAADFDLELLENRTLDGDI 182


>gi|260223245|emb|CBA33614.1| hypothetical protein Csp_B19940 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 215

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           PV ++T +  P L +        +       L++      G+ V    V GG      ++
Sbjct: 106 PVFVLTHHARPPLVMEGGTTFHFVTEGPVVALERARAAAGGKDVR---VGGGVNTIQQYL 162

Query: 304 NSRLVDSIILYRSQIVIGEG 323
              L+D + +  S +++G G
Sbjct: 163 RLGLIDEMHIAISPVLLGAG 182


>gi|323343044|ref|ZP_08083275.1| dihydrofolate reductase [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463108|gb|EFY08303.1| dihydrofolate reductase [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 176

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D+  +L  +  +    + + GG  +  + + + ++D   +  + I++G  GIP   +E
Sbjct: 92  SEDVIGVLNEIKQQEGKDIWIVGGGMLVSALVEASIIDEYWIAAAPILLG-KGIP-LFDE 149

Query: 332 GYLEKNFMCVRRDYFGSDVCLEY 354
                    +     G  V ++Y
Sbjct: 150 SINSHQLNLIESYTKGQLVYMKY 172


>gi|284992265|ref|YP_003410819.1| bifunctional deaminase-reductase domain-containing protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284065510|gb|ADB76448.1| bifunctional deaminase-reductase domain protein [Geodermatophilus
           obscurus DSM 43160]
          Length = 182

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 4/85 (4%)

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGVTSLLVEGGAAV 298
            L  P+++VT    PV      +                       R VT +   GG  +
Sbjct: 70  ELQVPILVVTHTPPPVEPKRNERLFFTFATEGVESAVAQAAEAAGERDVTVV---GGVDL 126

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323
               + + LVD + +    +++G G
Sbjct: 127 NRQLLAAGLVDELHVDVMPVLLGSG 151


>gi|224824076|ref|ZP_03697184.1| bifunctional deaminase-reductase domain protein [Lutiella
           nitroferrum 2002]
 gi|224603495|gb|EEG09670.1| bifunctional deaminase-reductase domain protein [Lutiella
           nitroferrum 2002]
          Length = 220

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 15/118 (12%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                 PV I+T +  P + +        I       L +      G  V    + GG  
Sbjct: 100 NPPYHVPVFILTHHARPPIEMEGDTTFHFITGGIHEALDRAREAAAGMDVR---IGGGPD 156

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
               ++   L+D + +  + +++G G           E  F  V     G + C+E++
Sbjct: 157 TVKQYLREGLIDELHIAIAPVLLGRG-----------ESLFEGVDLRALGYE-CVEFV 202


>gi|51244557|ref|YP_064441.1| dihydrofolate reductase [Desulfotalea psychrophila LSv54]
 gi|50875594|emb|CAG35434.1| similar to dihydrofolate reductase [Desulfotalea psychrophila
           LSv54]
          Length = 179

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 4/95 (4%)

Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI---IYCDCRDLKKLLTILVGRGVT 288
           L  K  +T L  P    T     VL     +    +   +      +K+L+  L   G  
Sbjct: 51  LGRKSFETVLSFPTWPYTGKRVIVLTKTLEEIPARVRGRVELYSGLMKELVASLEAEGCR 110

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            + ++GG  +  SF+   L+  I + R  +++GEG
Sbjct: 111 RIYIDGG-KIIRSFLRKNLLTDITITRIPLLLGEG 144


>gi|145589924|ref|YP_001156521.1| CMP/dCMP deaminase, zinc-binding [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048330|gb|ABP34957.1| CMP/dCMP deaminase, zinc-binding protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 186

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 37/120 (30%), Gaps = 25/120 (20%)

Query: 30  SVACLIV--KDGIVIGRGVTAYGGCP--HAEVQALEE--AGEEARG---ATAYVTLEPCS 80
                I   K G ++ +GV      P  H E+  + +  A    +G      Y T EPC 
Sbjct: 54  PFGAAITNSKSGKILAQGVNKTFSNPVLHGEMVCINQYVAQHGNQGWANLILYTTGEPC- 112

Query: 81  HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
                P C   +I  GI  VV                 + + GI +      E     + 
Sbjct: 113 -----PMCMSALIWSGIGGVVYG----------SSANTIKKSGIDIFTFSAKEINQGNNF 157


>gi|21218960|ref|NP_624739.1| DNA-binding protein [Streptomyces coelicolor A3(2)]
 gi|6138886|emb|CAB59715.1| DNA-binding protein [Streptomyces coelicolor A3(2)]
          Length = 215

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 24/123 (19%)

Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275
              P  ++         +S  ++   L    + T   D V A   R +  +      RDL
Sbjct: 98  GRPPFVVVTAS----PPES--VRLTGLDWTFVTTGLPDAVAAARERAEAASADL--GRDL 149

Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
             +L              GG A+  S +++ LV+ + L+ + +V+G G   +PL  G   
Sbjct: 150 DVVLM-------------GGGALIGSALDAGLVEVLSLHLAPVVLGSG---TPLFTGGTP 193

Query: 336 KNF 338
              
Sbjct: 194 HTL 196


>gi|299136696|ref|ZP_07029879.1| bifunctional deaminase-reductase domain protein [Acidobacterium sp.
           MP5ACTX8]
 gi|298601211|gb|EFI57366.1| bifunctional deaminase-reductase domain protein [Acidobacterium sp.
           MP5ACTX8]
          Length = 193

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 45/134 (33%), Gaps = 18/134 (13%)

Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY----CDCRDLKKL 278
           IL   +  +  + +      A   I T   + +    F     +++        +D   +
Sbjct: 62  ILSGFWPKAPSNPMADALNAATKYIATHRPESLEWGPFEGLGPDLVEGVRRIKSQDGPDI 121

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
                      +L  G + +  + +   L D ++L+   +++G G       EG   ++F
Sbjct: 122 -----------VLW-GSSTLTSTLLEHGLADEVLLFVYPVLLGTG--KRFFAEGTPARSF 167

Query: 339 MCVRRDYFGSDVCL 352
             +      S + +
Sbjct: 168 ELISSKALPSGIVM 181


>gi|254233244|ref|ZP_04926570.1| hypothetical protein TBCG_03677 [Mycobacterium tuberculosis C]
 gi|124603037|gb|EAY61312.1| hypothetical protein TBCG_03677 [Mycobacterium tuberculosis C]
          Length = 152

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 45/123 (36%), Gaps = 21/123 (17%)

Query: 38  DGIVIGRGVTAYGG----CPHAEVQALEEA------GEEARGATAYVTLEPCSHYGRSPP 87
           DG  + R V A         HAE+ A+  A      G    G T  VT+EPC        
Sbjct: 33  DGTELARAVNAREALGDPTAHAEILAMRLAAGVLGDGWRLEGTTLAVTVEPC------TM 86

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
           CA  ++   + R+V    +P     G          L+ +  +   ++  E    L A+ 
Sbjct: 87  CAGALVMARVARLVFGAWEPKTGAVGSLWDVVRDRRLNHRPEVRGGVLARECAAPLEAFF 146

Query: 143 TRQ 145
            RQ
Sbjct: 147 ARQ 149


>gi|283780773|ref|YP_003371528.1| bifunctional deaminase-reductase domain-containing protein
           [Pirellula staleyi DSM 6068]
 gi|283439226|gb|ADB17668.1| bifunctional deaminase-reductase domain protein [Pirellula staleyi
           DSM 6068]
          Length = 189

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 8/107 (7%)

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
             P  + T         A    N+  +  D R +   +  + G      +V GG  +A  
Sbjct: 73  EQPTFVFTSRP----LAAPPGVNVRFVSGDVRAVHDAMIEVAGTK-NRWIV-GGGELAGQ 126

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
           F ++ L+D +I+  + + +   G+P  L    +           +G 
Sbjct: 127 FHDAGLLDELIIQITAVTL-ASGMP-LLPRNIITPPLKLTSVQQYGD 171


>gi|254784551|ref|YP_003071979.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Teredinibacter turnerae T7901]
 gi|237683915|gb|ACR11179.1| riboflavin biosynthesis protein RibD domain protein [Teredinibacter
           turnerae T7901]
          Length = 220

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
             + V  +   GGA   + ++++ LVD +    S + +G+G
Sbjct: 145 GEKDVRIV---GGANTINQYLDAGLVDEMHYVISPVFLGDG 182


>gi|170751807|ref|YP_001758067.1| CMP/dCMP deaminase zinc-binding [Methylobacterium radiotolerans JCM
           2831]
 gi|170658329|gb|ACB27384.1| CMP/dCMP deaminase zinc-binding [Methylobacterium radiotolerans JCM
           2831]
          Length = 152

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 17/118 (14%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60
           S     +  A+  +  +V      P    +IV+DG V+ R             HAE+ AL
Sbjct: 2   STHEDHIREAVALAAANV-EAGGAPY-GAVIVRDGAVLVRAANTVHATNDPSAHAEMVAL 59

Query: 61  EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            EA       +      Y +  PC      P C   +   G +         +    G
Sbjct: 60  REASRLLGRRDLGDCVMYASGRPC------PMCHAAMRLAGFKEGYFAFSAEEAETYG 111


>gi|254380894|ref|ZP_04996260.1| bifunctional deaminase-reductase domain containing protein
           [Streptomyces sp. Mg1]
 gi|194339805|gb|EDX20771.1| bifunctional deaminase-reductase domain containing protein
           [Streptomyces sp. Mg1]
          Length = 127

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 7/91 (7%)

Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
             LA     + ++     D    +  L  +    + + GGA +A   +    +D +I+ R
Sbjct: 28  RTLAQLDPAVEVVPT---DPVAFVRDLKKQDGEGIWLCGGANLAGQLLEE--IDELIIKR 82

Query: 316 SQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
             +VIG  GIP   +  +    F       F
Sbjct: 83  YPVVIGS-GIP-LFDAPFRPSGFKLTDSRVF 111


>gi|78779266|ref|YP_397378.1| tRNA-adenosine deaminase [Prochlorococcus marinus str. MIT 9312]
 gi|78712765|gb|ABB49942.1| tRNA-adenosine deaminase [Prochlorococcus marinus str. MIT 9312]
          Length = 171

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 31/93 (33%), Gaps = 15/93 (16%)

Query: 39  GIVIGRGVTAY----GGCPHAEVQALEEAG-----EEARGATAYVTLEPCSHYGRSPPCA 89
           G  IGRGV           HAE+ AL +A                 LEPC        CA
Sbjct: 53  GRCIGRGVNRRSVNKDPLGHAEIMALRQASLIKNDWRFNECITITNLEPC------TMCA 106

Query: 90  QFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
             +I+  + +VV    D      G  +     K
Sbjct: 107 SALIQARMGKVVFGAYDKKRGGLGGSIDLSKHK 139


>gi|254883694|ref|ZP_05256404.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319642762|ref|ZP_07997403.1| hypothetical protein HMPREF9011_03003 [Bacteroides sp. 3_1_40A]
 gi|254836487|gb|EET16796.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317385617|gb|EFV66555.1| hypothetical protein HMPREF9011_03003 [Bacteroides sp. 3_1_40A]
          Length = 165

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 50/115 (43%), Gaps = 12/115 (10%)

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
           ++ AL    I+V  N+    +                  ++ +  L G+G+  ++V GG 
Sbjct: 57  LQDALAGKEIVVLSNNHEARSGHKT----------VHTPEEAVEYLKGKGMEEIVVGGGV 106

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
              ++F++  LV  I    + +VIG+GG+    ++ +++  F  +  +    +V 
Sbjct: 107 QTYNAFLDKDLVTDIYFNVTPMVIGDGGVIGSKDDLFVK--FDKMNYEPIIENVI 159


>gi|116748127|ref|YP_844814.1| zinc-binding CMP/dCMP deaminase [Syntrophobacter fumaroxidans MPOB]
 gi|116697191|gb|ABK16379.1| CMP/dCMP deaminase, zinc-binding [Syntrophobacter fumaroxidans
           MPOB]
          Length = 158

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 46/157 (29%), Gaps = 38/157 (24%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA------------ 48
           M   +    +   AL  ++    L         +IVK   +I  G               
Sbjct: 1   MNRPTKSEYYTEIALSVAQRSTCLRR---RFGAVIVKSDQIISTGYNGAPRKTANCIDLG 57

Query: 49  ---------YGG-------CPHAEVQA-LEEAGEEARGATAYVT---LEPCSHYGRSPP- 87
                      G         HAE+ A +  +  +  GA  Y+    +E  +      P 
Sbjct: 58  YCARKQLSIPAGQNYELCRAVHAEMNAVIHASRLDMVGADLYLAGLDVETGNQVIHPEPC 117

Query: 88  --CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
             C + II  GI+RVVV  +             L  +
Sbjct: 118 LLCRRVIINAGIQRVVVPAESEGFHYIDVDDWILQDR 154


>gi|302529528|ref|ZP_07281870.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sp. AA4]
 gi|302438423|gb|EFL10239.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sp. AA4]
          Length = 206

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 39/123 (31%), Gaps = 10/123 (8%)

Query: 226 PHFKLSLDSKIIKTALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
               +    +I++     P  + +    DP  +                DL   +  L  
Sbjct: 76  RAEDVPGQERILRALNERPKYVASSTLTDPKWSGTTALTG---------DLAAAVADLKA 126

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           R    L V G   +    +   LVD +I     +V+G+G    P     L  + +  R D
Sbjct: 127 RPGGELQVHGSGTLVRWLLEQGLVDEMIFLVIPVVVGQGERLFPRNGPDLALDLVESRVD 186

Query: 345 YFG 347
             G
Sbjct: 187 ARG 189


>gi|258565523|ref|XP_002583506.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237907207|gb|EEP81608.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 224

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 53/180 (29%), Gaps = 54/180 (30%)

Query: 9   RFMSAALRFSRWHVGLTST----NPSVACLIVK-----------------DGIVIGRGVT 47
            ++S  L  +       S     N  V  +++                  D  V+  G T
Sbjct: 10  HYLSQCLALAA-----CSPPKPTNFRVGAILLLRRYPTASDPDPDQQTTLDDRVLSTGYT 64

Query: 48  -AYGGCPHAEVQAL-------------------EEAGEEARG-ATAYVTLEPCSHY-GRS 85
               G  HAE   L                   +E G++       YVT+EPC      +
Sbjct: 65  LELRGNTHAEQCCLSKYASHHGVLEEDVGIPLQQERGDDPHAKIVMYVTMEPCGERLSGN 124

Query: 86  PPCAQFIIEC------GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
             CA  I+E       GI RV   V +P   V       +     +   ++E      L 
Sbjct: 125 KACATRIVETRRNGRGGIDRVYFGVKEPGTFVGESQGCKMLDAARVGWELVEGMEDEILK 184


>gi|261407073|ref|YP_003243314.1| bifunctional deaminase-reductase domain-containing protein
           [Paenibacillus sp. Y412MC10]
 gi|261283536|gb|ACX65507.1| bifunctional deaminase-reductase domain protein [Paenibacillus sp.
           Y412MC10]
          Length = 187

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           GG  +A   + + L+D   L  + IV+G G    P     L      +   +F S V 
Sbjct: 125 GGPELAGEAMRAGLIDECHLLLNPIVLGGGKRALP---DNLCMRLELLGERHFPSGVV 179


>gi|226288486|gb|EEH43998.1| tRNA-specific adenosine deaminase [Paracoccidioides brasiliensis
          Pb18]
          Length = 164

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 8  ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG 43
            FM  AL      +    T   V C++V +  +IG
Sbjct: 18 EYFMRKALDMGEEALASGET--PVGCVLVHNEEIIG 51


>gi|254474256|ref|ZP_05087646.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Pseudovibrio sp. JE062]
 gi|211956630|gb|EEA91840.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Pseudovibrio sp. JE062]
          Length = 169

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 21/117 (17%)

Query: 1   MPVSSFDARF--MSAALRFSRWHVGLTSTNP-SVACLIVK-DGIVIGRGVT----AYGGC 52
           M  S  +     M   +  +     L +  P    C +   +G ++ +            
Sbjct: 1   MTESELELHHQRMRELI--AYTATSLETPYPSPFGCAVYSSEGELLAQAYDSVIKECDPT 58

Query: 53  PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
            H E+ A+  A E ++     G   Y T EPC+       C    I  G   +V   
Sbjct: 59  CHGEINAIRLASETSKTRSFPGGILYSTCEPCAM------CMAATIWAGFDTLVFGA 109


>gi|254454396|ref|ZP_05067833.1| cytosine deaminase [Octadecabacter antarcticus 238]
 gi|198268802|gb|EDY93072.1| cytosine deaminase [Octadecabacter antarcticus 238]
          Length = 145

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 33/91 (36%), Gaps = 16/91 (17%)

Query: 30  SVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
            V  +++   G+VI               HAE+ A+  A      E   G   YVTLEPC
Sbjct: 18  PVGAVVIGPTGLVIATAGNRTRELNDPTAHAEILAIRAACAALGQERLTGHDIYVTLEPC 77

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
                 P CA  I    + R+     DP   
Sbjct: 78  ------PMCAAAIANARLARLYYGASDPKSG 102


>gi|333030802|ref|ZP_08458863.1| bifunctional deaminase-reductase domain protein [Bacteroides
           coprosuis DSM 18011]
 gi|332741399|gb|EGJ71881.1| bifunctional deaminase-reductase domain protein [Bacteroides
           coprosuis DSM 18011]
          Length = 178

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 3/81 (3%)

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
            I Y     L+++  I   +G   + + GG  +A   +N+ L+D++I+    +++G  GI
Sbjct: 87  GIHYLGENWLEEIKFIKDQKG-QDIWLVGGGEIASEMLNAGLIDTMIITEFPVLLG-NGI 144

Query: 326 PSPLEEGYLEKNFMCVRRDYF 346
           P      + +  +  +R  Y+
Sbjct: 145 P-LYNPPFKKSQWSILRGRYY 164


>gi|189467334|ref|ZP_03016119.1| hypothetical protein BACINT_03722 [Bacteroides intestinalis DSM
           17393]
 gi|189435598|gb|EDV04583.1| hypothetical protein BACINT_03722 [Bacteroides intestinalis DSM
           17393]
          Length = 67

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 19/30 (63%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GG  +  S I + L+DS+ +Y   +++G+G
Sbjct: 3   GGGKLLTSLIKAGLLDSLTVYTVPVMLGKG 32


>gi|251795232|ref|YP_003009963.1| CMP/dCMP deaminase zinc-binding [Paenibacillus sp. JDR-2]
 gi|247542858|gb|ACS99876.1| CMP/dCMP deaminase zinc-binding [Paenibacillus sp. JDR-2]
          Length = 159

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 18/115 (15%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV----TAYGGCPHAEV 57
           +    A ++   +  SR      + N     ++V + G ++        T      HAE 
Sbjct: 1   MKQDHAYYLKYCIEVSRRSR--ENGNTPFGAILVNEQGEIVLEQENVELTEKRCTGHAET 58

Query: 58  QALEEAGEEARGA-----TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
             +E+A  +         T Y T EPC+       C+  I    + +VV    + 
Sbjct: 59  ALMEKASHQFEHHDLWNYTLYTTFEPCAM------CSGAIYWGNVGKVVYAATEE 107


>gi|256080812|ref|XP_002576670.1| cytidine/deoxycytidylate deaminase-related [Schistosoma mansoni]
 gi|238661949|emb|CAZ32907.1| cytidine/deoxycytidylate deaminase-related [Schistosoma mansoni]
          Length = 89

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 17/84 (20%)

Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEE 66
          M  A   +   +   +  P V C  V +G VI  G            HAE+  +    + 
Sbjct: 1  MDIAFELACEAL-RCNEVP-VGCAFVYNGEVIASGRNEVNATRDATQHAEMVTIRRLEQW 58

Query: 67 ARG-----------ATAYVTLEPC 79
           R               +VT+EPC
Sbjct: 59 CRNNQKELDKILVECDLFVTVEPC 82


>gi|256827881|ref|YP_003156609.1| CMP/dCMP deaminase zinc-binding [Desulfomicrobium baculatum DSM
           4028]
 gi|256577057|gb|ACU88193.1| CMP/dCMP deaminase zinc-binding [Desulfomicrobium baculatum DSM
           4028]
          Length = 153

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 46/155 (29%), Gaps = 43/155 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
            +   FMS A   +     L      V  L VKD  ++  G                   
Sbjct: 6   PWPQYFMSIAYLVAERSTCLRRK---VGALAVKDKRILATGYNGAPAGLTHCLDLGCMRE 62

Query: 47  ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
                           HAE   + +A   G    GA  + T +PC        CA+ +I 
Sbjct: 63  KLGIPSGQRHELCRALHAEQNVIIQAAIHGVGIEGADIFCTTQPCI------LCAKMLIN 116

Query: 95  CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
           C +R +      PD        + L +  I   R+
Sbjct: 117 CRVRAIFFAEGYPDEMSR----EMLDEAKIPYTRL 147


>gi|333024644|ref|ZP_08452708.1| hypothetical protein STTU_2147 [Streptomyces sp. Tu6071]
 gi|332744496|gb|EGJ74937.1| hypothetical protein STTU_2147 [Streptomyces sp. Tu6071]
          Length = 204

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
           GGAA+  S   + LVD + L+ S +++G G   +PL  G   ++ 
Sbjct: 144 GGAALIRSAFAAGLVDVLSLHLSPVLLGAG---TPLFTGGTARSL 185


>gi|163848013|ref|YP_001636057.1| deaminase-reductase domain-containing protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222525897|ref|YP_002570368.1| bifunctional deaminase-reductase domain-containing protein
           [Chloroflexus sp. Y-400-fl]
 gi|163669302|gb|ABY35668.1| bifunctional deaminase-reductase domain protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222449776|gb|ACM54042.1| bifunctional deaminase-reductase domain protein [Chloroflexus sp.
           Y-400-fl]
          Length = 212

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 3/82 (3%)

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
             PV ++T                 +     + L         R +    + GGA V   
Sbjct: 101 HTPVYVLTHERRNPWVRPGGTTFYFVNDGPEQALALAREAAGERDIR---ISGGANVIQQ 157

Query: 302 FINSRLVDSIILYRSQIVIGEG 323
           ++N  LVD + +    ++ G G
Sbjct: 158 YLNLGLVDELEIALIPVIFGGG 179


>gi|329929487|ref|ZP_08283221.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Paenibacillus sp. HGF5]
 gi|328936375|gb|EGG32822.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Paenibacillus sp. HGF5]
          Length = 183

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-NF 338
             L  +    L + GG  +A S +  +L+D ++L  + +++G+G    PL      +  F
Sbjct: 105 RHLKEQADGKLWLCGGGELAGSLLQHKLIDQLVLKINPVMVGDG---VPLFGSVKPRLKF 161

Query: 339 MCVRRDYFGSDVC 351
             +    + + V 
Sbjct: 162 DLIDMKQYANGVL 174


>gi|315919444|ref|ZP_07915684.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693319|gb|EFS30154.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 148

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCL 352
           GG     S I + L+D I LY   +++G+G              +         +  VCL
Sbjct: 85  GGGKFITSLIEASLLDEITLYIVPVMLGDGIR---FIGKTFGSKWELTGHRVIDNQVVCL 141

Query: 353 EY 354
            Y
Sbjct: 142 TY 143


>gi|260171125|ref|ZP_05757537.1| hypothetical protein BacD2_04591 [Bacteroides sp. D2]
          Length = 173

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCL 352
           GG     S I + L+D I LY   +++G+G              +         +  VCL
Sbjct: 110 GGGKFITSLIEASLLDEITLYIVPVMLGDGIR---FIGKTFGSKWELTGHRVIDNQVVCL 166

Query: 353 EY 354
            Y
Sbjct: 167 TY 168


>gi|284042870|ref|YP_003393210.1| bifunctional deaminase-reductase domain protein [Conexibacter
           woesei DSM 14684]
 gi|283947091|gb|ADB49835.1| bifunctional deaminase-reductase domain protein [Conexibacter
           woesei DSM 14684]
          Length = 190

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 26/64 (40%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           GGA +A S + + LVD I +    ++IGEG    P     +       R       V L 
Sbjct: 126 GGAHLAASLMRAELVDQIEVLVYPVLIGEGTPLLPELRDRVGLELEATRTFRQSGVVSLR 185

Query: 354 YIGK 357
           Y  +
Sbjct: 186 YRVR 189


>gi|116513488|ref|YP_812394.1| deoxycytidylate deaminase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116092803|gb|ABJ57956.1| Deoxycytidylate deaminase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 148

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 34/141 (24%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------TAYGGCP--- 53
           M  AL  ++     T     V  ++VKD  ++  G                         
Sbjct: 1   MMQALVIAQRS---TCDRALVGSVLVKDKRILSTGYNGSVSGQDHCDDVGHQLVDGHCVR 57

Query: 54  --HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
             H+E+ +L    + G        YVT  PC +      C + +++ G+ ++    D  D
Sbjct: 58  TIHSEMNSLISCAKNGVSTDDTEIYVTHFPCYN------CTKHLLQAGVIKINYYYDYHD 111

Query: 109 VRVSGRGLQWLSQKGIIVDRM 129
             ++   +Q L   G+  +++
Sbjct: 112 SPLA---IQLLRDSGVPYEQI 129


>gi|260939908|ref|XP_002614254.1| hypothetical protein CLUG_05740 [Clavispora lusitaniae ATCC 42720]
 gi|238852148|gb|EEQ41612.1| hypothetical protein CLUG_05740 [Clavispora lusitaniae ATCC 42720]
          Length = 109

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 14/103 (13%)

Query: 51  GCPHAEVQALEEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
              H E+  LE AG    G     T Y TL PC        C+   +  G++RVV+  ++
Sbjct: 8   ATLHGEISTLENAGRLPGGVYKNCTMYTTLSPCHM------CSGACLMYGVKRVVLGENE 61

Query: 107 PDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
             V       + L   G+ V  M + + K  +  ++  + +  
Sbjct: 62  NFVGAE----KLLESMGVEVVNMNDEKCKELMSRFIRERPQDW 100


>gi|268589808|ref|ZP_06124029.1| tRNA-specific adenosine deaminase [Providencia rettgeri DSM 1131]
 gi|291314796|gb|EFE55249.1| tRNA-specific adenosine deaminase [Providencia rettgeri DSM 1131]
          Length = 157

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 11/96 (11%)

Query: 5  SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
            D +FM+               N     ++VKD  V+  G     T      HAE+  +
Sbjct: 6  ELDIQFMAQ--ALELAAEATKKGNEPFGAVLVKDNQVVMTGENHIHTESDPTYHAELGLI 63

Query: 61 EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQF 91
           +   E +       T Y + EPC     +    Q 
Sbjct: 64 RQYCSEHKIMNLSEYTLYTSCEPCCMCSGAMVWCQL 99


>gi|126178774|ref|YP_001046739.1| cytosine deaminase [Methanoculleus marisnigri JR1]
 gi|125861568|gb|ABN56757.1| Cytosine deaminase [Methanoculleus marisnigri JR1]
          Length = 140

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 54/145 (37%), Gaps = 18/145 (12%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP--HAEVQALEEAG-- 64
           M  A+  +    GL      +  ++V+DG +IGRG         P  HAE+  L  AG  
Sbjct: 1   MKCAVEEAE--AGLREGGIPIGSVLVRDGRIIGRGRNRRVQNDDPVLHAEIDCLRNAGRI 58

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
                 T Y TL PC        CA   ++ GI +VV               ++L   G+
Sbjct: 59  GSYAECTLYSTLMPCY------LCAGAAVQFGIGKVVAGESVNFAGAR----EFLESHGV 108

Query: 125 IVDRMMESEGKIFLHAYLTRQVEKR 149
            V  +     K  +  ++ +  +  
Sbjct: 109 EVLDLDLDVCKAMMGTFIEQHPDLW 133


>gi|88855473|ref|ZP_01130137.1| putative dihydrofolate reductase [marine actinobacterium PHSC20C1]
 gi|88815380|gb|EAR25238.1| putative dihydrofolate reductase [marine actinobacterium PHSC20C1]
          Length = 184

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 7/84 (8%)

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
              P  + T  D PV        ++  +     D    +    G G   + V GG  +A 
Sbjct: 72  GAKPTFVFTTRDLPV----PEGADVRFVRGSVADALPAIREAAGDG--DIWVVGGGDLAA 125

Query: 301 SFINSRLVDSIILYRSQ-IVIGEG 323
            F++   +D I +  +   V+G  
Sbjct: 126 QFMDEGALDEISVSIAPATVLGGA 149


>gi|183597629|ref|ZP_02959122.1| hypothetical protein PROSTU_00918 [Providencia stuartii ATCC
          25827]
 gi|188022897|gb|EDU60937.1| hypothetical protein PROSTU_00918 [Providencia stuartii ATCC
          25827]
          Length = 157

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 11/96 (11%)

Query: 5  SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
            D +FM+               N     ++VKD  V+  G     T      HAE+  +
Sbjct: 6  ELDIQFMAQ--ALELAAEATKKGNEPFGAVLVKDNQVVMTGENHIHTESDPTYHAELGLI 63

Query: 61 EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQF 91
           +   E +       T Y + EPC     +   +Q 
Sbjct: 64 RQYCSEHKIMNLSEYTLYTSCEPCCMCSGAMVWSQL 99


>gi|302521718|ref|ZP_07274060.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sp. SPB78]
 gi|318058385|ref|ZP_07977108.1| hypothetical protein SSA3_10605 [Streptomyces sp. SA3_actG]
 gi|318077364|ref|ZP_07984696.1| hypothetical protein SSA3_11740 [Streptomyces sp. SA3_actF]
 gi|302430613|gb|EFL02429.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sp. SPB78]
          Length = 204

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
           GGAA+  S   + LVD + L+ S +++G G   +PL  G   ++ 
Sbjct: 144 GGAALIRSAFAAGLVDVLSLHLSPVLLGAG---TPLFTGGTARSL 185


>gi|227538659|ref|ZP_03968708.1| possible cytosine deaminase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241578|gb|EEI91593.1| possible cytosine deaminase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 94

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 11/98 (11%)

Query: 52  CPHAEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
             HAE+QA   A     G+  +  T YVT+EPC     +    Q      + R+V    D
Sbjct: 2   TAHAEMQAFTAASSYLGGKYLKDCTLYVTVEPCVMCAGASYWTQ------VSRIVYGAPD 55

Query: 107 PDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
                S  G  +  +  II   + E   ++    +  +
Sbjct: 56  EKRGASRYGKLFHPKTEIISGVLQEECAELITSFFRQK 93


>gi|152966031|ref|YP_001361815.1| cytosine deaminase [Kineococcus radiotolerans SRS30216]
 gi|151360548|gb|ABS03551.1| Cytosine deaminase [Kineococcus radiotolerans SRS30216]
          Length = 165

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 17/142 (11%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEA-- 67
           AL  +R         P  A L   DG ++G G            H E  A   AG  A  
Sbjct: 26  ALEQARAGAAEGGV-PIGAALFTLDGTLLGAGRNRRVQDDDPSVHGETDAFRNAGRRASY 84

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           R      TL PC +      C+  + + GI  ++V     +      G  WL++ G+ V 
Sbjct: 85  RHTVMVTTLSPCWY------CSGLVRQFGIGHLLVG----ESTTFTGGHAWLAEHGVSVT 134

Query: 128 RMMESEGKIFLHAYLTRQVEKR 149
            + +   +  +  ++ ++ +  
Sbjct: 135 VLDDDRCRALMTTFIEQRPDVW 156


>gi|325096270|gb|EGC49580.1| DRAP deaminase [Ajellomyces capsulatus H88]
          Length = 289

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 65/229 (28%), Gaps = 60/229 (26%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK------------DGIVIGRGVT-AYGGCPHA 55
            ++ A L  ++       TN  V  +++             +  V+  G T    G  HA
Sbjct: 23  HYLRACLSLAQQSPPK-PTNFRVGAILLSRTLLSSGRPRTYNDTVLSTGYTLELPGNTHA 81

Query: 56  EVQALE-----------------------------------EAGE-EARGATAYVTLEPC 79
           E  AL                                    +A E E +    YVT+EPC
Sbjct: 82  EQCALAKYAARHGVTDERIGEVLPPPPSPPLPPQSSGPGTDKAPEGEQKNIILYVTMEPC 141

Query: 80  S-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ---------WLSQKGIIVDRM 129
                 + PCA  I++           + +   +  GL+            + GI     
Sbjct: 142 EKRLSGNMPCAARIVQTRRAASSFGNSEENRHAASVGLEASQGSAAGGMRRRSGIDKVYF 201

Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
              E   F+   +  ++   + +  ++    +  I          TG  
Sbjct: 202 GVKEPGTFVGQSVGCKMLDEAGVEWEVVEGMEEEILKVAMAGHEETGEE 250


>gi|302542420|ref|ZP_07294762.1| DNA-binding protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302460038|gb|EFL23131.1| DNA-binding protein [Streptomyces himastatinicus ATCC 53653]
          Length = 214

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GGA     F+++ LVD++ +  S + +G G
Sbjct: 152 GGATTIREFLDADLVDTLHVTVSPVELGAG 181


>gi|194375476|dbj|BAG56683.1| unnamed protein product [Homo sapiens]
          Length = 119

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 8/79 (10%)

Query: 48  AYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD- 105
           +     HAE+ A+  +   + +G + YV L PC+       CA+ II+ GI+ V+   D 
Sbjct: 19  SKFPACHAELNAIMNKNSTDVKGCSMYVALFPCNE------CAKLIIQAGIKEVIFMSDK 72

Query: 106 DPDVRVSGRGLQWLSQKGI 124
             D   +       +  G+
Sbjct: 73  YHDSDEATAARLLFNMAGV 91


>gi|312141846|ref|YP_004009182.1| hypothetical protein REQ_45470 [Rhodococcus equi 103S]
 gi|325672891|ref|ZP_08152585.1| dihydrofolate reductase [Rhodococcus equi ATCC 33707]
 gi|311891185|emb|CBH50504.1| conserved hypothetical protein [Rhodococcus equi 103S]
 gi|325556144|gb|EGD25812.1| dihydrofolate reductase [Rhodococcus equi ATCC 33707]
          Length = 188

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 4/96 (4%)

Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
                +     D  +L+  L G+    + + GG  +A   ++   +D +++ R  ++ G 
Sbjct: 95  AEAESLVVTDADPVELVRELKGQPGADIWLCGGGVLASLLVDE--IDRLVVKRHPVLFG- 151

Query: 323 GGIPSPLEEGYLEKNFMCVRRDYFGSDV-CLEYIGK 357
            GIP      Y    F  V    F S V   EY  +
Sbjct: 152 NGIPMFAPGTYRPGRFDAVDTRSFESGVAVTEYARR 187


>gi|119961980|ref|YP_946739.1| hypothetical protein AAur_0949 [Arthrobacter aurescens TC1]
 gi|119948839|gb|ABM07750.1| conserved hypothetical protein [Arthrobacter aurescens TC1]
          Length = 206

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 12/92 (13%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG--- 294
                +P +++T  + P      R+    + +    DL   L           L EG   
Sbjct: 84  HPPNESPTVVLTHREPPADWPPVRRDGKPVPFEFVGDLDSALERAAD------LAEGKEI 137

Query: 295 ---GAAVAHSFINSRLVDSIILYRSQIVIGEG 323
              GA V    +   ++D + +    +++G G
Sbjct: 138 GVAGADVVQQCLRRGVIDELRVDLVPVLLGSG 169


>gi|271962292|ref|YP_003336488.1| dihydrofolate reductase family protein [Streptosporangium roseum
           DSM 43021]
 gi|270505467|gb|ACZ83745.1| dihydrofolate reductase family protein [Streptosporangium roseum
           DSM 43021]
          Length = 197

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
           RD   L+  L       + + GG  +A+S +    +D +I+    +V G G   + ++ G
Sbjct: 113 RDPAALVRDLKRGDGLDIWLCGGGGLANSLLTE--IDELIIKSYPVVAGAGA--ALVDGG 168

Query: 333 YLEKNFMCVRRDYFGSDVCLEYIGK 357
           +    F    R  F +   + +  +
Sbjct: 169 FRPTAFTPTDRRSFPNGASITWYAR 193


>gi|301090647|ref|XP_002895529.1| deoxycytidylate deaminase [Phytophthora infestans T30-4]
 gi|262097843|gb|EEY55895.1| deoxycytidylate deaminase [Phytophthora infestans T30-4]
          Length = 122

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 10/84 (11%)

Query: 47  TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           T Y    HAE+ A L +   + +G + YV L PC+       CA+ II+ GI RVV   D
Sbjct: 33  TKYPYVCHAEMNAILNKNSTDVKGCSIYVALFPCNE------CAKLIIQSGIARVVYYSD 86

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRM 129
           +     S R L      G+   + 
Sbjct: 87  NWKFVASRRLLDM---AGVQYTQH 107


>gi|255030296|ref|ZP_05302247.1| hypothetical protein LmonL_16551 [Listeria monocytogenes LO28]
          Length = 129

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 12/98 (12%)

Query: 54  HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           HAE+ A+ +    G     A  YVT  PC        C + II+ GI++V    D  +  
Sbjct: 13  HAEMNAILQCAKFGATTDKAELYVTHFPCL------ACTKSIIQAGIKKVYFAKDYKNHP 66

Query: 111 VSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
            +   L+  +  G+ + ++   E  + ++ +   ++  
Sbjct: 67  YA---LELFNIAGVELQKVEFDESVLQVNNWNGEKMHT 101


>gi|296140586|ref|YP_003647829.1| bifunctional deaminase-reductase domain protein [Tsukamurella
           paurometabola DSM 20162]
 gi|296028720|gb|ADG79490.1| bifunctional deaminase-reductase domain protein [Tsukamurella
           paurometabola DSM 20162]
          Length = 181

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 13/111 (11%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P  + T  D     +    + + ++  +    +  L  + G     + V GG  +A  F 
Sbjct: 76  PTFVFTHRD-----IEPVHETVTVVSGEPAAQRSRLERVAGEK--GVWVVGGGDLAAQFA 128

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSP------LEEGYLEKNFMCVRRDYFGS 348
            + ++D +++  +   +G G    P      L E    + F+C R    GS
Sbjct: 129 EAGMLDEVVISYAPATVGSGRPLFPRAFDFELVEWARNRAFLCGRYRVIGS 179


>gi|225018186|ref|ZP_03707378.1| hypothetical protein CLOSTMETH_02123 [Clostridium methylpentosum
           DSM 5476]
 gi|224948983|gb|EEG30192.1| hypothetical protein CLOSTMETH_02123 [Clostridium methylpentosum
           DSM 5476]
          Length = 208

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 2/84 (2%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           D    ++ L  +    + V GGA +    I +  +D   +    +++G  GIP    +G 
Sbjct: 126 DAADFVSQLRKQQGKDIWVCGGAELVSQLIQADAIDVYDITILPVLLGS-GIP-LFRQGN 183

Query: 334 LEKNFMCVRRDYFGSDVCLEYIGK 357
                   +    GS +   Y  +
Sbjct: 184 PLTELRLEQLKACGSSIRAIYTRR 207


>gi|86140015|ref|ZP_01058579.1| cytidine and deoxycytidylate deaminase family protein [Roseobacter
           sp. MED193]
 gi|85823265|gb|EAQ43476.1| cytidine and deoxycytidylate deaminase family protein [Roseobacter
           sp. MED193]
          Length = 148

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 35/102 (34%), Gaps = 16/102 (15%)

Query: 30  SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
            V  ++V  DG +  +             HAE+  L EA      E  +G   YVTLEPC
Sbjct: 23  PVGAVLVAPDGRIAAQAGNRTRELSDPTAHAEILVLREACAAGKTERLQGFDLYVTLEPC 82

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +    +           +RRV     DP       G    S 
Sbjct: 83  AMCAAAI------AAARLRRVYYGASDPKSGGVAHGACVFSH 118


>gi|226364615|ref|YP_002782397.1| cytosine deaminase [Rhodococcus opacus B4]
 gi|226243104|dbj|BAH53452.1| cytosine deaminase [Rhodococcus opacus B4]
          Length = 159

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 47/142 (33%), Gaps = 17/142 (11%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAG--EEA 67
           A+  +          P  A L   DG ++GRG       G P  H E  A   AG   + 
Sbjct: 21  AIAEAELGR-REGGIPIGAALFAGDGTLLGRGRNRRVQHGDPSVHGETDAFRAAGRQRDY 79

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           R      TL PC +      C+  + +  I  +VV               WL   G+ V 
Sbjct: 80  RSTIMVTTLSPCWY------CSGLVRQFNIGAIVVGESVTFTGGH----DWLRDNGVDVT 129

Query: 128 RMMESEGKIFLHAYLTRQVEKR 149
            + +      +  ++  + E  
Sbjct: 130 VLRDQHCIDLMTEFIQARPELW 151


>gi|284041866|ref|YP_003392206.1| bifunctional deaminase-reductase domain protein [Conexibacter
           woesei DSM 14684]
 gi|283946087|gb|ADB48831.1| bifunctional deaminase-reductase domain protein [Conexibacter
           woesei DSM 14684]
          Length = 211

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 3/86 (3%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                APV ++T    P +          +       L +       R V    V GGA 
Sbjct: 90  DPPFRAPVFVLTNRSRPHVVKQGGTSYTFVTDGIESALAQARAAAGERNVD---VAGGAD 146

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323
               FI + L+D + L+   ++ GEG
Sbjct: 147 TVQQFIRAGLLDELHLHVLPVLFGEG 172


>gi|226229023|ref|YP_002763129.1| hypothetical protein GAU_3617 [Gemmatimonas aurantiaca T-27]
 gi|226092214|dbj|BAH40659.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 191

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 39/108 (36%), Gaps = 10/108 (9%)

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI-LVGRGVT-----SLLVEGG 295
             P  + +    PV        ++  +  D R +   +   L  R        ++ + GG
Sbjct: 73  AQPCWVFSSRTLPV----VEGADVRFVRGDVRPVFDAMQETLRERHAAGQTAPNIWIVGG 128

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
             +A    ++ L+D +I+  + + +G+G    P            VR+
Sbjct: 129 GDLAGQVHDAGLLDEMIVTITSVTLGQGAPLFPRRVATPALALKAVRQ 176


>gi|158318357|ref|YP_001510865.1| DNA-binding protein [Frankia sp. EAN1pec]
 gi|158113762|gb|ABW15959.1| DNA-binding protein [Frankia sp. EAN1pec]
          Length = 200

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 16/30 (53%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GGA     F+++ L+D + +  +   +G G
Sbjct: 138 GGATTIREFLDADLIDEMHIAVAPCELGSG 167


>gi|148927656|ref|ZP_01811111.1| bifunctional deaminase-reductase domain protein [candidate division
           TM7 genomosp. GTL1]
 gi|147886995|gb|EDK72508.1| bifunctional deaminase-reductase domain protein [candidate division
           TM7 genomosp. GTL1]
          Length = 204

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 62/171 (36%), Gaps = 28/171 (16%)

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           ++DA+L+G  T            +   +  P      P       +K +     +P  ++
Sbjct: 41  RADAVLLGPQT-----------YHIFAQMWP------PQGNEVPMAKFLNE---SPKYVI 80

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           T+N +    L ++   +         L + +  L  R   ++ V G   +  S +   L+
Sbjct: 81  TDNPNSAGELEWQPATL----LKGM-LAEEIRHLKSRPGKNIQVPGSPRLVRSLLAEGLL 135

Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIGKN 358
           D + L    +VIG+G      +      N   V+   F +  + + Y  K+
Sbjct: 136 DELYLSICPVVIGQGLK--LFDGISKTINLDMVQSQIFDNGLISVTYRPKS 184


>gi|124010413|ref|ZP_01695056.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Microscilla marina ATCC 23134]
 gi|123983508|gb|EAY23982.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Microscilla marina ATCC 23134]
          Length = 195

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-----GIPSPL 329
           T L  +   S+ + GG  +A      +L+D +IL  + IV+G+G     G+ SPL
Sbjct: 114 THLKKQTGKSIWLCGGGHLAGLLAQHQLIDEVILKVNPIVLGQGIPLFAGLSSPL 168


>gi|119625104|gb|EAX04699.1| dCMP deaminase, isoform CRA_b [Homo sapiens]
          Length = 119

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 8/73 (10%)

Query: 54  HAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD-DPDVRV 111
           HAE+ A+  +   + +G + YV L PC+       CA+ II+ GI+ V+   D   D   
Sbjct: 25  HAELNAIMNKNSTDVKGCSMYVALFPCNE------CAKLIIQAGIKEVIFMSDKYHDSDE 78

Query: 112 SGRGLQWLSQKGI 124
           +       +  G+
Sbjct: 79  ATAARLLFNMAGV 91


>gi|300786562|ref|YP_003766853.1| hypothetical protein AMED_4682 [Amycolatopsis mediterranei U32]
 gi|299796076|gb|ADJ46451.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
          Length = 191

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 51/153 (33%), Gaps = 21/153 (13%)

Query: 217 HSPMRIILDPH---FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR---KKNINIIYC 270
             P+R++L            +     A      I      PV  L+ R     +      
Sbjct: 43  RDPLRMVLGAKTYASNAPFLAPGFDRARFDE-WITRMFASPVTVLSSRLTEPLDWPGTTI 101

Query: 271 DCRDLKKLLTILVG------RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
           +  D  +++  L        R   SL       +  + +N+ LVD++ +    ++ G+ G
Sbjct: 102 EAGDPAEVVRHLKAGSEVPLRSHGSL------TLNRAVLNAGLVDAVEVTVFPVLSGKTG 155

Query: 325 IPSPLEEGYLEKNFMCVRRDYFGSDV-CLEYIG 356
           + + + +G  + +   +    F      L Y  
Sbjct: 156 V-TRIFDGVDDFDLELLEARTFDGHTQVLTYRP 187


>gi|293371006|ref|ZP_06617548.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292633936|gb|EFF52483.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 172

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           +  T +LV GG  +  S I + L+DS+ +Y   ++ G+G             ++      
Sbjct: 99  KQKTDILVVGGGKLLTSLIKAGLLDSLTIYTVPVMAGKG---IGFIGETFGSHWKLSESR 155

Query: 345 YFGSDVC 351
              + V 
Sbjct: 156 VLDNGVV 162


>gi|167946682|ref|ZP_02533756.1| bifunctional GMP synthase/glutamine amidotransferase protein
          [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 51

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 1  MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP 53
          M     D  FM                 P V  L+V+DG VIG G     G P
Sbjct: 1  MTPDEQDHHFMQ-CALALAARAEAVGEVP-VGALLVRDGEVIGEGWNRPIGKP 51


>gi|29366796|ref|NP_813736.1| gp20 [Streptomyces phage phiBT1]
 gi|29243116|emb|CAD80144.1| gp20 [Streptomyces phage phiBT1]
          Length = 116

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 34/104 (32%), Gaps = 39/104 (37%)

Query: 31  VACLIVK-DGIVIGRGVTAYG-GCP------------------------------HAEVQ 58
           V  ++V  +  V G G      G P                              HAE  
Sbjct: 12  VGAVLVNANNEVRGTGYNGAPSGVPGCASAGACPRGRLSAVECAPNSDYANCTADHAERN 71

Query: 59  ALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           A+  A   E  G+T Y T EPC      P C   I   GIRRVV
Sbjct: 72  AIRHAPAAELPGSTLYTTREPC------PACWTLIRAAGIRRVV 109


>gi|163740840|ref|ZP_02148233.1| cytidine and deoxycytidylate deaminase family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161385831|gb|EDQ10207.1| cytidine and deoxycytidylate deaminase family protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 147

 Score = 41.4 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 37/102 (36%), Gaps = 15/102 (14%)

Query: 29  PSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
           P  A LI  +G V+ R             HAEV  + EA      E   G   YVTLEPC
Sbjct: 18  PVGAALISPEGQVVARAGNRTRERSDPTAHAEVLVIREACAAAGSERLTGHDLYVTLEPC 77

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
           +       CA  I    IRRV     DP       G    S 
Sbjct: 78  AM------CAAAIAAARIRRVYYGASDPKSGGVAHGACVFSH 113


>gi|89901614|ref|YP_524085.1| bifunctional deaminase-reductase-like protein [Rhodoferax
           ferrireducens T118]
 gi|89346351|gb|ABD70554.1| bifunctional deaminase-reductase-like [Rhodoferax ferrireducens
           T118]
          Length = 215

 Score = 41.4 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GG A    ++ + LVD + +  + I++G G
Sbjct: 152 GGVATIQQYLRAGLVDEMHIAVAPILLGSG 181


>gi|158318268|ref|YP_001510776.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EAN1pec]
 gi|158113673|gb|ABW15870.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EAN1pec]
          Length = 185

 Score = 41.4 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 57/155 (36%), Gaps = 21/155 (13%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEV 57
           PV+      M  AL  +             A ++  DG V+GRG  A    G P  HAEV
Sbjct: 21  PVTDGYREAMGLALAEADLARAAGDVP-VGAVVVAADGAVLGRGHNAREAAGDPTAHAEV 79

Query: 58  QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            AL +A          GAT  VTLEPC        CA  ++   + R+V    D      
Sbjct: 80  VALRQAAARLGSWRLTGATLVVTLEPC------TMCAGALVLARVDRLVYGAVDDKAGAV 133

Query: 113 GRGLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
           G          L+ +  +V  +   E    L A+ 
Sbjct: 134 GSLWDVVRDRRLNHRPEVVAGVRGQECSEQLAAFF 168


>gi|15610888|ref|NP_218269.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           H37Rv]
 gi|15843372|ref|NP_338409.1| cytidine and deoxycytidylate deaminase family protein
           [Mycobacterium tuberculosis CDC1551]
 gi|31794922|ref|NP_857415.1| cytidine/deoxycytidylate deaminase [Mycobacterium bovis AF2122/97]
 gi|121639666|ref|YP_979890.1| putative cytidine/deoxycytidylate deaminase [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|148663618|ref|YP_001285141.1| cytidine and deoxycytidylate deaminase family protein
           [Mycobacterium tuberculosis H37Ra]
 gi|148824957|ref|YP_001289711.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis F11]
 gi|167970913|ref|ZP_02553190.1| hypothetical cytidine/deoxycytidylate deaminase [Mycobacterium
           tuberculosis H37Ra]
 gi|215405807|ref|ZP_03417988.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           02_1987]
 gi|215413680|ref|ZP_03422348.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           94_M4241A]
 gi|215424998|ref|ZP_03422917.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis T92]
 gi|215448096|ref|ZP_03434848.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis T85]
 gi|218755535|ref|ZP_03534331.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis GM
           1503]
 gi|219559836|ref|ZP_03538912.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis T17]
 gi|224992162|ref|YP_002646851.1| putative cytidine/deoxycytidylate deaminase [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253800799|ref|YP_003033800.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis KZN
           1435]
 gi|254366297|ref|ZP_04982341.1| hypothetical cytidine/deoxycytidylate deaminase [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254552866|ref|ZP_05143313.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260184675|ref|ZP_05762149.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           CPHL_A]
 gi|260198800|ref|ZP_05766291.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis T46]
 gi|260202955|ref|ZP_05770446.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis K85]
 gi|289441188|ref|ZP_06430932.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis T46]
 gi|289445351|ref|ZP_06435095.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           CPHL_A]
 gi|289556017|ref|ZP_06445227.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis KZN
           605]
 gi|289571998|ref|ZP_06452225.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis T17]
 gi|289572402|ref|ZP_06452629.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis K85]
 gi|289747592|ref|ZP_06506970.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           02_1987]
 gi|289748271|ref|ZP_06507649.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis T92]
 gi|289759914|ref|ZP_06519292.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis T85]
 gi|289763934|ref|ZP_06523312.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis GM
           1503]
 gi|294995336|ref|ZP_06801027.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis 210]
 gi|297636433|ref|ZP_06954213.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis KZN
           4207]
 gi|297733427|ref|ZP_06962545.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis KZN
           R506]
 gi|298527225|ref|ZP_07014634.1| hypothetical cytidine/deoxycytidylate deaminase [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306778112|ref|ZP_07416449.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           SUMu001]
 gi|306778644|ref|ZP_07416981.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           SUMu002]
 gi|306786666|ref|ZP_07424988.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           SUMu003]
 gi|306791033|ref|ZP_07429355.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           SUMu004]
 gi|306791352|ref|ZP_07429654.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           SUMu005]
 gi|306795417|ref|ZP_07433719.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           SUMu006]
 gi|306801392|ref|ZP_07438060.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           SUMu008]
 gi|306805598|ref|ZP_07442266.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           SUMu007]
 gi|306969995|ref|ZP_07482656.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           SUMu009]
 gi|306974229|ref|ZP_07486890.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           SUMu010]
 gi|307081937|ref|ZP_07491107.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           SUMu011]
 gi|307086550|ref|ZP_07495663.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           SUMu012]
 gi|313660758|ref|ZP_07817638.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis KZN
           V2475]
 gi|2960176|emb|CAA18074.1| POSSIBLE CYTIDINE/DEOXYCYTIDYLATE DEAMINASE [Mycobacterium
           tuberculosis H37Rv]
 gi|13883737|gb|AAK48223.1| cytidine and deoxycytidylate deaminase family protein
           [Mycobacterium tuberculosis CDC1551]
 gi|31620520|emb|CAD95964.1| POSSIBLE CYTIDINE/DEOXYCYTIDYLATE DEAMINASE [Mycobacterium bovis
           AF2122/97]
 gi|121495314|emb|CAL73801.1| Possible cytidine/deoxycytidylate deaminase [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|134151809|gb|EBA43854.1| hypothetical cytidine/deoxycytidylate deaminase [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148507770|gb|ABQ75579.1| cytidine and deoxycytidylate deaminase family protein
           [Mycobacterium tuberculosis H37Ra]
 gi|148723484|gb|ABR08109.1| hypothetical cytidine/deoxycytidylate deaminase [Mycobacterium
           tuberculosis F11]
 gi|224775277|dbj|BAH28083.1| putative cytidine/deoxycytidylate deaminase [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253322302|gb|ACT26905.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis KZN
           1435]
 gi|289414107|gb|EFD11347.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis T46]
 gi|289418309|gb|EFD15510.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           CPHL_A]
 gi|289440649|gb|EFD23142.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis KZN
           605]
 gi|289536833|gb|EFD41411.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis K85]
 gi|289545752|gb|EFD49400.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis T17]
 gi|289688120|gb|EFD55608.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           02_1987]
 gi|289688858|gb|EFD56287.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis T92]
 gi|289711440|gb|EFD75456.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis GM
           1503]
 gi|289715478|gb|EFD79490.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis T85]
 gi|298497019|gb|EFI32313.1| hypothetical cytidine/deoxycytidylate deaminase [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308213634|gb|EFO73033.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           SUMu001]
 gi|308328367|gb|EFP17218.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           SUMu002]
 gi|308328772|gb|EFP17623.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           SUMu003]
 gi|308332614|gb|EFP21465.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           SUMu004]
 gi|308340105|gb|EFP28956.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           SUMu005]
 gi|308344093|gb|EFP32944.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           SUMu006]
 gi|308347895|gb|EFP36746.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           SUMu007]
 gi|308351763|gb|EFP40614.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           SUMu008]
 gi|308352546|gb|EFP41397.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           SUMu009]
 gi|308356497|gb|EFP45348.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           SUMu010]
 gi|308360445|gb|EFP49296.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           SUMu011]
 gi|308364027|gb|EFP52878.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           SUMu012]
 gi|323717617|gb|EGB26819.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           CDC1551A]
 gi|326905590|gb|EGE52523.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
           W-148]
 gi|328460526|gb|AEB05949.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis KZN
           4207]
          Length = 152

 Score = 41.4 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 45/123 (36%), Gaps = 21/123 (17%)

Query: 38  DGIVIGRGVTAYGG----CPHAEVQALEEA------GEEARGATAYVTLEPCSHYGRSPP 87
           DG  + R V A         HAE+ A+  A      G    G T  VT+EPC        
Sbjct: 33  DGTELARAVNAREALGDPTAHAEILAMRLAAGVLGDGWRLEGTTLAVTVEPC------TM 86

Query: 88  CAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142
           CA  ++   + R+V    +P     G          L+ +  +   ++  E    L A+ 
Sbjct: 87  CAGALVLARVARLVFGAWEPKTGAVGSLWDVVRDRRLNHRPEVRGGVLARECAAPLEAFF 146

Query: 143 TRQ 145
            RQ
Sbjct: 147 ARQ 149


>gi|302869791|ref|YP_003838428.1| bifunctional deaminase-reductase domain-containing protein
           [Micromonospora aurantiaca ATCC 27029]
 gi|315503727|ref|YP_004082614.1| bifunctional deaminase-reductase domain protein [Micromonospora sp.
           L5]
 gi|302572650|gb|ADL48852.1| bifunctional deaminase-reductase domain protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|315410346|gb|ADU08463.1| bifunctional deaminase-reductase domain protein [Micromonospora sp.
           L5]
          Length = 187

 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           GGA +A + +   L+D  +L    +++G+G             N   V    F   V L
Sbjct: 124 GGATLAAAAMRGGLIDEYVLVTHPVLVGDG--KPFFTALDNWVNLALVETRTFPGGVLL 180


>gi|332523783|ref|ZP_08400035.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332315047|gb|EGJ28032.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 189

 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
             +L + L  L       +LV G   ++ S ++  L+D I L  S  ++G G
Sbjct: 106 SENLNQYLKELKHTAGQDILVLGSPRLSRSLLSENLIDKITLTVSPTIVGNG 157


>gi|319936681|ref|ZP_08011094.1| dihydrofolate reductase [Coprobacillus sp. 29_1]
 gi|319808238|gb|EFW04803.1| dihydrofolate reductase [Coprobacillus sp. 29_1]
          Length = 176

 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 1/85 (1%)

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
           T L     +       +L     +    I + D +   +L+  L  +    + + GGA V
Sbjct: 61  TELSPNEWVYEGMTSYILTHQNHQSTSQIFFTDEK-PSQLIHHLKRKEGKGIWICGGANV 119

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323
               +   ++D   +     ++G+G
Sbjct: 120 IQQILQEDMIDEFYISIIPTLLGKG 144


>gi|145485052|ref|XP_001428535.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124395621|emb|CAK61137.1| unnamed protein product [Paramecium tetraurelia]
          Length = 353

 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 39/127 (30%), Gaps = 34/127 (26%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGCP---------------------------HAEVQALEE 62
           +V  +IVKD  ++  G                                   HAE  A+ E
Sbjct: 230 AVGVVIVKDSRIVATGYNGTPYGKQNCWEKGCDRCNQNTKQGVDLEKCFCFHAEESAILE 289

Query: 63  AG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            G ++++    Y TL PC        C + I+   I ++    D           +++  
Sbjct: 290 IGTKKSKNMVMYTTLFPCLQ------CTKIILSTKIDKIYYEEDYDKSAAKSELHKYVKV 343

Query: 122 KGIIVDR 128
           + I    
Sbjct: 344 EQIDSSH 350


>gi|163847996|ref|YP_001636040.1| deaminase-reductase domain-containing protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222525879|ref|YP_002570350.1| bifunctional deaminase-reductase domain-containing protein
           [Chloroflexus sp. Y-400-fl]
 gi|163669285|gb|ABY35651.1| bifunctional deaminase-reductase domain protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222449758|gb|ACM54024.1| bifunctional deaminase-reductase domain protein [Chloroflexus sp.
           Y-400-fl]
          Length = 196

 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 1/85 (1%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             DL K +  L  +    + V G A +  + + + LVD ++L    IV+G G    P   
Sbjct: 111 GDDLVKTVADLRAQPGGYIYVYGSAMMVQTLLAADLVDELLLTIEPIVLGGGKTIFPRGG 170

Query: 332 GYLEKNFMCVRRDYFGSDVCLEYIG 356
             +    +   R   G+ VC  Y+ 
Sbjct: 171 ALIPFELVSSARASTGALVC-RYVR 194


>gi|293369608|ref|ZP_06616186.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292635312|gb|EFF53826.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 172

 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 23/36 (63%)

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           T +LV GG  +  S I + L+DS+ +Y   +++G+G
Sbjct: 102 TDMLVVGGGKLLTSLIKAGLLDSLTIYTVPVMVGKG 137


>gi|94313409|ref|YP_586618.1| bifunctional deaminase-reductase-like protein [Cupriavidus
           metallidurans CH34]
 gi|93357261|gb|ABF11349.1| bifunctional deaminase-reductase-like protein [Cupriavidus
           metallidurans CH34]
          Length = 214

 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 7/30 (23%), Positives = 16/30 (53%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GG      ++   L+D + +  S +++G+G
Sbjct: 153 GGPETIRQYLRDGLIDELHIAISPVLLGQG 182


>gi|320531168|ref|ZP_08032158.1| guanine deaminase family protein [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320136617|gb|EFW28575.1| guanine deaminase family protein [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 157

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 17/87 (19%)

Query: 29  PSVACLIVKDGIVIGR-GVTAYG--GCP--HAEVQALEEA-----GEEARGATAYVTLEP 78
           P V  +IV    VI   GV      G P  HAE+ A+ +A       + RG T   T EP
Sbjct: 26  PFVG-VIVDGQQVISEFGVNRVQETGDPSAHAEITAIRDALTSSGRTDLRGTTILATGEP 84

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVD 105
           C    R        +   I  + V VD
Sbjct: 85  CGMCYRHA------VNARIADIRVAVD 105


>gi|265751224|ref|ZP_06087287.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Bacteroides sp. 3_1_33FAA]
 gi|263238120|gb|EEZ23570.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Bacteroides sp. 3_1_33FAA]
          Length = 172

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 22/36 (61%)

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
             +LV GG  +  S + + L+DS+ +Y   +++G+G
Sbjct: 102 NDMLVVGGGKLLTSLVKAGLLDSLTIYTVPVMVGKG 137


>gi|77462818|ref|YP_352322.1| hypothetical protein RSP_2267 [Rhodobacter sphaeroides 2.4.1]
 gi|77387236|gb|ABA78421.1| cytidine and deoxycytidylate deaminase family protein [Rhodobacter
           sphaeroides 2.4.1]
          Length = 150

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 38/100 (38%), Gaps = 15/100 (15%)

Query: 52  CPHAEVQALEEA----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
             HAE+ A+  A    GE   G   YVTLEPC      P CA  I    I R+     DP
Sbjct: 51  TAHAEMLAIRAACATLGERLTGCDLYVTLEPC------PMCAAAISAARIARLYYGAADP 104

Query: 108 DVRVSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
                 +G +  +         + D + E+E    L  + 
Sbjct: 105 KSGGVAQGARVFAHPQCHHVPEVYDGIGEAEAAALLRGFF 144


>gi|328957760|ref|YP_004375146.1| putative oxidoreductase [Carnobacterium sp. 17-4]
 gi|328674084|gb|AEB30130.1| putative oxidoreductase [Carnobacterium sp. 17-4]
          Length = 191

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           +++ GG  + ++F+ +  +D  I+    +++G G    PL  G      + +        
Sbjct: 126 IMLFGGGKLINTFLQAECIDEYIIGLIPVILGAGR---PLFYGGYPPIELKLEEYMVDKG 182

Query: 350 VC-LEYIGK 357
           +  L Y+ +
Sbjct: 183 IVILRYVNR 191


>gi|5051817|emb|CAB45046.1| hypothetical protein [Amycolatopsis orientalis]
          Length = 205

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
           +LV G A +  +   + L+D   L    I++G  G P   +          V  + +
Sbjct: 137 ILVHGSATLNRALHEAGLIDRYHLLVFPILLGA-GKPLFSDADLPATRLKLVEHEVY 192


>gi|307328235|ref|ZP_07607413.1| bifunctional deaminase-reductase domain protein [Streptomyces
           violaceusniger Tu 4113]
 gi|306886069|gb|EFN17077.1| bifunctional deaminase-reductase domain protein [Streptomyces
           violaceusniger Tu 4113]
          Length = 203

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 45/125 (36%), Gaps = 18/125 (14%)

Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
             +++I+     +P  + ++           K           D+   +  +  +    L
Sbjct: 77  HPNARILNG---SPKYVASQ--------TLTKVGWEPTTILSGDIPAQVAEVKRQPGREL 125

Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG-------EGGIPSPLEEGYLEKNFMCVRR 343
            + G A +  S + + L+D + L  + +V+G       +GG P+ L   + E     +  
Sbjct: 126 QIHGSARLGQSLLAAGLIDELRLAIAPVVVGSGRHLFPDGGTPAGLRLLHNETTPSGIAV 185

Query: 344 DYFGS 348
             + S
Sbjct: 186 RVYES 190


>gi|254474243|ref|ZP_05087633.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Pseudovibrio sp. JE062]
 gi|211956617|gb|EEA91827.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Pseudovibrio sp. JE062]
          Length = 171

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 48/152 (31%), Gaps = 21/152 (13%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEE 66
           M A + ++          P    L   DG ++ +             H E+ A+ EA ++
Sbjct: 15  MQALVEYTATSFETPYPTPFGGALYGSDGTLLAQAYNRMVRECDPSSHGELNAIREACKK 74

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD------DPDVRVSGRG 115
            +     G+  Y T EPC      P C    I  G+  +V          +   +     
Sbjct: 75  YQTRSFPGSILYATSEPC------PMCMTATISIGVETLVFGAFTNEDAINFWPQEMDLR 128

Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVE 147
            + +++  I+  ++   EG             
Sbjct: 129 ARDIAEHVIMRPKIEIIEGVERDACRQLFTDC 160


>gi|190895157|ref|YP_001985450.1| putative dihydrofolate reductase [Rhizobium etli CIAT 652]
 gi|190700818|gb|ACE94900.1| putative dihydrofolate reductase protein [Rhizobium etli CIAT 652]
          Length = 188

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 64/204 (31%), Gaps = 24/204 (11%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH-LLRAQSDAILVGIGTVLADDPEL 207
              + +   VS D  I         I G     Q    L AQ+D IL G  T        
Sbjct: 1   MKKLIVSNWVSLDGYIAGPNGALDWIFGDGRLAQYETELMAQADTILSGRRTYEQ----- 55

Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
             +      ++P          +  + +       A  I+V+ +    L  A    +   
Sbjct: 56  LSQYWSAVPNNPQ--------AMDWERRYADMINAAHHIVVSHD----LQKAPWGNSTIW 103

Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
              + R     L  L      ++L+ G A V  S  N   VD   L    +++G G    
Sbjct: 104 PSIEQR----ALDALKAGSDKAILIFGSATVVQSLTNLGAVDEFHLLVHPVLLGGGTR-- 157

Query: 328 PLEEGYLEKNFMCVRRDYFGSDVC 351
             EE  +  N   V  + F S + 
Sbjct: 158 LFEEVDVRMNLRRVDVEAFDSGIV 181


>gi|256392344|ref|YP_003113908.1| bifunctional deaminase-reductase domain-containing protein
           [Catenulispora acidiphila DSM 44928]
 gi|256358570|gb|ACU72067.1| bifunctional deaminase-reductase domain protein [Catenulispora
           acidiphila DSM 44928]
          Length = 190

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 2/79 (2%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           DL   +  +       +LV     + H+ I   LVD I L    +V+GEG          
Sbjct: 107 DLPAEVARIKQEIDGEVLVYASFQLVHALIEQDLVDEIRLMVIPVVVGEGAR--LFGTAG 164

Query: 334 LEKNFMCVRRDYFGSDVCL 352
             K    +     G ++  
Sbjct: 165 GVKPLRLISTRSVGENIVF 183


>gi|295087405|emb|CBK68928.1| Dihydrofolate reductase [Bacteroides xylanisolvens XB1A]
          Length = 173

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GG     S I + L+D I LY   +++G+G
Sbjct: 110 GGGKFITSLIEASLLDEITLYIVPVMLGDG 139


>gi|118602342|ref|YP_903557.1| CMP/dCMP deaminase, zinc-binding [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
 gi|118567281|gb|ABL02086.1| CMP/dCMP deaminase, zinc-binding protein [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 148

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 30/119 (25%)

Query: 6   FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV------------------ 46
           +D R++S A   S W       +  V  + V +   V+ +G                   
Sbjct: 7   WDERYLSLAKEISTWSK---DPSTQVGAITVGQKKEVLSQGFNGFPRGIHDSDDRYNHRE 63

Query: 47  TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           T Y    HAE+ A+  A   G    GAT YV   P         CA+ II+ GI++V++
Sbjct: 64  TKYQFVVHAEMNAIYNATYSGTSLDGATLYVYGLPIC-----LECAKGIIQVGIKKVII 117


>gi|29345516|ref|NP_809019.1| hypothetical protein BT_0106 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29337408|gb|AAO75213.1| riboflavin biosynthesis protein RibD-like protein [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 148

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GG     S I + L+D I LY   +++G+G
Sbjct: 85  GGGKFITSLIEASLLDEITLYIVPVMLGDG 114


>gi|158318378|ref|YP_001510886.1| deaminase-reductase domain-containing protein [Frankia sp. EAN1pec]
 gi|158113783|gb|ABW15980.1| bifunctional deaminase-reductase domain protein [Frankia sp.
           EAN1pec]
          Length = 217

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 3/86 (3%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                 PV ++T +  P L +        I       L++      G  V    + GG  
Sbjct: 99  DPPFHTPVFVLTHHPRPPLVMKGGTTFHFIDATPQEALRQAREAAGGLDVR---IGGGPT 155

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323
           +   F+ + L+D + +    I++G G
Sbjct: 156 MVRDFLAADLIDHLHVAVVPILLGRG 181


>gi|254498278|ref|ZP_05111019.1| hypothetical protein LDG_2700 [Legionella drancourtii LLAP12]
 gi|254352496|gb|EET11290.1| hypothetical protein LDG_2700 [Legionella drancourtii LLAP12]
          Length = 176

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           + + GGA +A SF    L++ +IL      +GEG
Sbjct: 111 IWLLGGAELAKSFAQEGLLNEVILTIIPQTLGEG 144


>gi|222475328|ref|YP_002563745.1| cytosine deaminase (ssnA) [Anaplasma marginale str. Florida]
 gi|222419466|gb|ACM49489.1| cytosine deaminase (ssnA) [Anaplasma marginale str. Florida]
          Length = 154

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 14/108 (12%)

Query: 52  CPHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
             HAE+ A+ EA              YVTLEPC+       CA  I    IRR+     +
Sbjct: 52  TAHAEMLAIREACLHLSTHVLDNCDMYVTLEPCAM------CAYAISLSRIRRLYFGAYN 105

Query: 107 PD---VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSH 151
                V    R  ++      +    +E E    L ++  +   ++  
Sbjct: 106 AKCGGVEHGARVFRFCHHIPEVYGGFLERENAEILKSFFYKLRNQQHQ 153


>gi|302343811|ref|YP_003808340.1| CMP/dCMP deaminase zinc-binding protein [Desulfarculus baarsii DSM
           2075]
 gi|301640424|gb|ADK85746.1| CMP/dCMP deaminase zinc-binding protein [Desulfarculus baarsii DSM
           2075]
          Length = 167

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 44/134 (32%), Gaps = 44/134 (32%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
           D  +++ A   +R    L         +IVKD  ++  G     G P             
Sbjct: 8   DEYYLNIAREVARRGTCLRRQY---GAVIVKDDQIVSTGY---AGAPRGVANCVDLGRCL 61

Query: 54  ------------------HAEVQA-LEEAGEEARGATAYV-TLEPCSHYGRSPP-----C 88
                             HAE+ A +  +  +   AT Y+  +E  +    + P     C
Sbjct: 62  REEMAVPSGQRYELCRSVHAEMNAVIHASRAQTMDATLYLAGIEVATGLATANPQPCLLC 121

Query: 89  AQFIIECGIRRVVV 102
            + II  GI  VVV
Sbjct: 122 RRVIINAGIAAVVV 135


>gi|239982691|ref|ZP_04705215.1| hypothetical protein SalbJ_24894 [Streptomyces albus J1074]
 gi|291454540|ref|ZP_06593930.1| DNA-binding protein [Streptomyces albus J1074]
 gi|291357489|gb|EFE84391.1| DNA-binding protein [Streptomyces albus J1074]
          Length = 205

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
           GGAA   S   + LVD + L+ + +V+G G   +PL  G   +  
Sbjct: 144 GGAATIRSAFEAGLVDVLSLHLAPVVLGAG---TPLFTGAAPRTL 185


>gi|206560222|ref|YP_002230986.1| hypothetical protein BCAL1859 [Burkholderia cenocepacia J2315]
 gi|198036263|emb|CAR52159.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
          Length = 177

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
           L  LL  L  +G   + ++GG  V    + + +VD I L    IV+G G    PL    L
Sbjct: 94  LAALLEQLAKQGHRHVYLDGGLTVREG-LKAGVVDRITLSWVPIVLGTG---IPLFGADL 149

Query: 335 EK 336
            +
Sbjct: 150 PQ 151


>gi|227519358|ref|ZP_03949407.1| dihydrofolate reductase family protein [Enterococcus faecalis
           TX0104]
 gi|227073184|gb|EEI11147.1| dihydrofolate reductase family protein [Enterococcus faecalis
           TX0104]
          Length = 180

 Score = 41.4 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 32/85 (37%)

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
           T  L P +   E+    +  +  + +         D   L+  +       + + GG  V
Sbjct: 61  TQELPPDVYFYEDKHSYIITSHPEPSTASRTFTKEDPVTLIRRIKEEDGAGIWIVGGPKV 120

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323
               + + L+D+ IL    + +GEG
Sbjct: 121 VQPLLAADLIDTFILTTIPLFLGEG 145


>gi|3599408|gb|AAC62713.1| dCMP deaminase [Cenarchaeum symbiosum]
          Length = 184

 Score = 41.4 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 30/114 (26%), Gaps = 45/114 (39%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNP---SVACLIVKDGIVIGRGVTAYGGCP-------- 53
           ++D  FM  A   ++        N     V  +IV+D   +  G                
Sbjct: 16  TWDEYFMLQA-ELAKLRS-----NCIVRKVGAVIVRDHRQLATGYNGTPPGVKNCYEGGC 69

Query: 54  -----------------------HAEVQALEEA-----GEEARGATAYVTLEPC 79
                                  HAE  A+        G    GAT Y T  PC
Sbjct: 70  ERCAERIEGRIKSGEALDRCLCNHAEANAIMHCAILGIGAGGGGATMYTTFSPC 123


>gi|237809037|ref|YP_002893477.1| CMP/dCMP deaminase zinc-binding [Tolumonas auensis DSM 9187]
 gi|237501298|gb|ACQ93891.1| CMP/dCMP deaminase zinc-binding [Tolumonas auensis DSM 9187]
          Length = 203

 Score = 41.4 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 32/146 (21%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYGG----CPHAEVQAL 60
           D   M+ A+  +R +V   +  P  A +IV    G+++  GV           H EV A+
Sbjct: 38  DEEKMTLAIELARQNVLRGTGGP-FASIIVHRQSGVLLSVGVNQVVAQNNSTLHGEVMAI 96

Query: 61  EEAGE----------EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
              GE          ++     + + EPC+       C   I+  G++R+V      D R
Sbjct: 97  -MLGEQRLQQFSLNSQSGEYELFTSCEPCAM------CMGAILWSGVKRLVCAATGEDAR 149

Query: 111 --------VSGRGLQWLSQKGIIVDR 128
                   V  +  ++LS  GI V R
Sbjct: 150 AIGFDEGPVFEQSYEYLSNAGIEVSR 175


>gi|284042868|ref|YP_003393208.1| bifunctional deaminase-reductase domain protein [Conexibacter
           woesei DSM 14684]
 gi|283947089|gb|ADB49833.1| bifunctional deaminase-reductase domain protein [Conexibacter
           woesei DSM 14684]
          Length = 240

 Score = 41.4 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            APV +VT     VL          +     R ++        + V    V GG  +   
Sbjct: 102 HAPVFVVTHRTRDVLERQGGTSFTFVTEGLERAVELARDAAGSKDVA---VAGGGELLRQ 158

Query: 302 FINSRLVDSIILYRSQIVIGEG 323
            +++ L+D + L+ + +++G+G
Sbjct: 159 VLSAGLLDQLELHIAPVLLGDG 180


>gi|91088933|ref|XP_973477.1| PREDICTED: similar to dCMP deaminase [Tribolium castaneum]
 gi|270011568|gb|EFA08016.1| hypothetical protein TcasGA2_TC005605 [Tribolium castaneum]
          Length = 318

 Score = 41.4 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 42/130 (32%), Gaps = 33/130 (25%)

Query: 11  MSAALRFSRWHVGLTSTNPSVA-CLIVKDGIVIGRGVTAYGGCP---------------- 53
           M+   + SR           V  C++   G  IG G                        
Sbjct: 167 MAFCEKVSRNSK---DPKKKVGACVVNAQGQAIGWGFNDMPQSHEDFNKYWENREEKLLR 223

Query: 54  --HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
             HAE+ A+  +    + A  Y T  PC+       CAQ I+  GI+ V       D  +
Sbjct: 224 VCHAELNAIVNSKGSLKNAKLYCTWFPCNI------CAQLIVNTGIKEVFY-----DQEL 272

Query: 112 SGRGLQWLSQ 121
             +  + ++ 
Sbjct: 273 GPKWAKMMNA 282


>gi|302530659|ref|ZP_07283001.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sp. AA4]
 gi|302439554|gb|EFL11370.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sp. AA4]
          Length = 213

 Score = 41.4 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
             PV ++T ++ P + L     +  +       L +       + V    + GG      
Sbjct: 103 RTPVFVLTHHERPSITLGQTTFHF-LNTTPAEALAQAKKAAGDKDVR---IGGGVTTVRQ 158

Query: 302 FINSRLVDSIILYRSQIVIGEG 323
           F+ + L+D++ +  + + +G+G
Sbjct: 159 FLEAGLIDTLHIAVAPVELGDG 180


>gi|284030465|ref|YP_003380396.1| bifunctional deaminase-reductase domain-containing protein
           [Kribbella flavida DSM 17836]
 gi|283809758|gb|ADB31597.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
           DSM 17836]
          Length = 188

 Score = 41.4 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-LE 353
           G  +A   I + LVD   L     ++G G          +  +   + + +F + V  L 
Sbjct: 125 GPVLAAQAIRAGLVDEYQLLLGPAIVGGGHR---FFPDDIRVDLELLDQRHFANGVVYLR 181

Query: 354 YIGKN 358
           Y  KN
Sbjct: 182 YGVKN 186


>gi|297199216|ref|ZP_06916613.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sviceus ATCC 29083]
 gi|197715056|gb|EDY59090.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sviceus ATCC 29083]
          Length = 190

 Score = 41.4 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-KNFMCVRRDYF-GSDVC 351
           GGA +A + + + L+D   +    +++G G   +P         N   V      G  V 
Sbjct: 125 GGATLAGAAMRAGLIDEYAIATHPVLVGSG---TPFFTALDNWVNLNLVETRTCPGGVVL 181

Query: 352 LEY 354
             Y
Sbjct: 182 TRY 184


>gi|123966234|ref|YP_001011315.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
           marinus str. MIT 9515]
 gi|123200600|gb|ABM72208.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
           marinus str. MIT 9515]
          Length = 165

 Score = 41.4 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 15/92 (16%)

Query: 39  GIVIGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCA 89
           G  IGRG            HAE+ AL +A            +  V LEPC        CA
Sbjct: 47  GRCIGRGSNKRETNNDPLGHAELIALRQASWIKNDWRFNECSIIVNLEPC------TMCA 100

Query: 90  QFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
             +++  +  V+   +D      G  +     
Sbjct: 101 AALVQARMGNVIYGAEDHKRGGFGGTIDLSKH 132


>gi|260905021|ref|ZP_05913343.1| hypothetical protein BlinB_06793 [Brevibacterium linens BL2]
          Length = 187

 Score = 41.4 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GA +A S + + L+D  IL    ++IG G
Sbjct: 125 GATLASSAMRAGLIDEYILVTYPVLIGGG 153


>gi|300785326|ref|YP_003765617.1| hypothetical protein AMED_3429 [Amycolatopsis mediterranei U32]
 gi|299794840|gb|ADJ45215.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
          Length = 191

 Score = 41.4 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 8/65 (12%)

Query: 293 EGG-------AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
           EGG       A +  +  ++ L+D   L    +++G  G     E    ++N   V  + 
Sbjct: 119 EGGPIIVAGSATLNRALADAGLIDRYHLLVFPVLLGA-GKRLFSETDKDKQNLKLVESEA 177

Query: 346 FGSDV 350
           +G+ V
Sbjct: 178 YGNGV 182


>gi|229819084|ref|YP_002880610.1| bifunctional deaminase-reductase domain protein [Beutenbergia
           cavernae DSM 12333]
 gi|229564997|gb|ACQ78848.1| bifunctional deaminase-reductase domain protein [Beutenbergia
           cavernae DSM 12333]
          Length = 188

 Score = 41.4 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           ++V GG  +A + + + L+D   L    +V+G G   +  ++    ++   V    F S 
Sbjct: 116 VIVWGGGRLAGALVAADLIDEYRLLVQPLVLGRGQ--ALFDQLPESRHLDLVEATPFPSG 173

Query: 350 VCLEYIGK 357
           V L     
Sbjct: 174 VVLHVYRP 181


>gi|145596073|ref|YP_001160370.1| deaminase-reductase domain-containing protein [Salinispora tropica
           CNB-440]
 gi|145305410|gb|ABP55992.1| bifunctional deaminase-reductase domain protein [Salinispora
           tropica CNB-440]
          Length = 180

 Score = 41.4 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
            N  ++     DL   +  L  R    + V G   +A S +   LVD + L  +  V+G 
Sbjct: 88  ANTTVVSSPVADL---VRRLKERPGGDIGVHGSIRLAQSLLADNLVDELRLVIAPAVLGS 144

Query: 323 G 323
           G
Sbjct: 145 G 145


>gi|146278266|ref|YP_001168425.1| CMP/dCMP deaminase, zinc-binding [Rhodobacter sphaeroides ATCC
           17025]
 gi|145556507|gb|ABP71120.1| CMP/dCMP deaminase, zinc-binding [Rhodobacter sphaeroides ATCC
           17025]
          Length = 114

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 15/100 (15%)

Query: 52  CPHAEVQALEEA----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
             HAE+ A+  A    GE   G   YVTLEPC      P CA  I    I R+     DP
Sbjct: 15  TAHAEMLAIRAACAELGERLTGCDLYVTLEPC------PMCAAAISAARIARLYYGAADP 68

Query: 108 DVRVSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
                 +G +  +         + D + E E    L  + 
Sbjct: 69  KSGGVAQGARVFAHPQCHHVPDVYDGIREEEAAALLRGFF 108


>gi|33240486|ref|NP_875428.1| cytosine/adenosine deaminase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33238014|gb|AAQ00081.1| Cytosine/adenosine deaminase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 164

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 45/125 (36%), Gaps = 21/125 (16%)

Query: 33  CLIVKD-GIVIGRGVTAYGGC----PHAEVQALEEA-----GEEARGATAYVTLEPCSHY 82
            +I+ + G  IG G            HAE+ AL +A            T  VTLEPC   
Sbjct: 38  AIILNEKGHCIGHGRNTRNKRFDPMGHAELVALRQAAWLKGDWRFNECTLIVTLEPCQM- 96

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEGKIF 137
                CA  +I+  + RV+    D      G  L          K I+   +M+ E K  
Sbjct: 97  -----CAGALIQARMGRVIFGAYDFKRGGLGGTLDLSTHKSAHHKMIVKGGVMKKEIKQE 151

Query: 138 LHAYL 142
           +  + 
Sbjct: 152 IEEWF 156


>gi|330799923|ref|XP_003287990.1| hypothetical protein DICPUDRAFT_78829 [Dictyostelium purpureum]
 gi|325082014|gb|EGC35511.1| hypothetical protein DICPUDRAFT_78829 [Dictyostelium purpureum]
          Length = 234

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 39/120 (32%), Gaps = 31/120 (25%)

Query: 3   VSSFDARF----MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----H 54
           +S+ D  F    M  AL  +    G        A +I ++G ++        G      H
Sbjct: 45  LSTSDLIFHENNMRIALNLAISVNGRFG-----AAIINRNGTLLCTA--MNNGTVSKILH 97

Query: 55  AEVQALEEAGEEA----------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
           AE+ A+    +             G   YVT EPC      P C   +I      V+   
Sbjct: 98  AEINAILNCTDIMAARGIKQSSWEGYYLYVTGEPC------PMCTSALIWSKFDAVIFGT 151


>gi|302527539|ref|ZP_07279881.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sp. AA4]
 gi|302436434|gb|EFL08250.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sp. AA4]
          Length = 200

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
           G  +    I + LVD ++L++  I++G G   S   E         V 
Sbjct: 139 GGVLVTEAIKAGLVDELVLHQVPILLGGGR--SFFGELPEHVRLRLVE 184


>gi|260771105|ref|ZP_05880032.1| cytosine deaminase [Vibrio furnissii CIP 102972]
 gi|260613702|gb|EEX38894.1| cytosine deaminase [Vibrio furnissii CIP 102972]
          Length = 158

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 28/118 (23%)

Query: 1   MPVSSFDARFMSAALRFSR--WHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG------ 51
           M   + D R++  +   +      G+   +P  A ++V  +G ++        G      
Sbjct: 1   MLNPTLDYRWLRHSFALAEDAKSRGI---HP-FAAVLVDANGEILLE---QINGYLPDLD 53

Query: 52  -CPHAEVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
              HAE   + +A +  R       T YV+ EPC+       CA  I   G+ RVV  
Sbjct: 54  MTGHAERLIMTQASKLYRPDFLNQCTLYVSAEPCAM------CAGAIYWAGVGRVVYG 105


>gi|156186020|gb|ABU55328.1| cytidine and deoxycytidylate deaminase family protein
           [Callosobruchus chinensis]
          Length = 71

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 11/61 (18%)

Query: 52  CPHAEVQALEEAGEEARGATA-----YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
             HAE+ A+++  E    +T      YVTLEPC      P CAQ I    I+R      +
Sbjct: 17  TAHAEMLAIKQECELLSTSTLYDSDIYVTLEPC------PMCAQAISFAXIKRXYFGAYN 70

Query: 107 P 107
           P
Sbjct: 71  P 71


>gi|150377175|ref|YP_001313770.1| deaminase-reductase domain-containing protein [Sinorhizobium
           medicae WSM419]
 gi|150031722|gb|ABR63837.1| bifunctional deaminase-reductase domain protein [Sinorhizobium
           medicae WSM419]
          Length = 215

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                 PV ++T +  P L +        +       L        GR V    + GG+A
Sbjct: 99  NPPYHGPVFVLTNHARPSLEMEGGTVFHFVTNGIEAALSSAREAADGRDVR---LGGGSA 155

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGI 325
               ++N+RLVD + +  + I++G G  
Sbjct: 156 TIRQYLNARLVDEMHIAIAPILLGSGEA 183


>gi|226362835|ref|YP_002780613.1| hypothetical protein ROP_34210 [Rhodococcus opacus B4]
 gi|226241320|dbj|BAH51668.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 233

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           GGA     F+++ LVD++ +  S I +G G  
Sbjct: 171 GGATTIREFLDADLVDTLHVVVSPIDLGSGAR 202


>gi|110639292|ref|YP_679501.1| dihydrofolate reductase [Cytophaga hutchinsonii ATCC 33406]
 gi|110281973|gb|ABG60159.1| dihydrofolate reductase [Cytophaga hutchinsonii ATCC 33406]
          Length = 181

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 65/204 (31%), Gaps = 33/204 (16%)

Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215
           +AV+ D  I      +           V    A  D I  G               +   
Sbjct: 8   LAVTLDGFIEGPNGETDWC-IMDDDMNVEGFLASIDTIFYGR-----------VSYDAWG 55

Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275
           +  P     D     + + K+ +        + +           + K   II     D+
Sbjct: 56  KFQP-----DSTA-SAAEQKLWQAIHAKKKFLFS-------KTVMQDKQATIIAS---DI 99

Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
              +  +  +G   + + GGA++  +FI   L+D   +    I +G G    PL E    
Sbjct: 100 AAYVAEIKKQGGKDIWLYGGASLIKTFIQLDLIDVYRISVHPIALGSGK---PLFETLQH 156

Query: 336 K-NFMCVRRDYFGSDVC-LEYIGK 357
           + N   ++ + F S V  L Y  +
Sbjct: 157 RLNLKLIKTNIFRSGVVQLIYEPE 180


>gi|322794640|gb|EFZ17648.1| hypothetical protein SINV_16526 [Solenopsis invicta]
          Length = 72

 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 4/48 (8%)

Query: 2  PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA 48
          P   +D  FM+ A   ++        N  V   IV  D  ++G G   
Sbjct: 5  PDIDWDDYFMATAFLSAKRSK---DPNTQVGACIVNNDNRIVGTGYNG 49


>gi|312198152|ref|YP_004018213.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c]
 gi|311229488|gb|ADP82343.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c]
          Length = 190

 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 47/160 (29%), Gaps = 32/160 (20%)

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           +S AILVG       D     R N            D   +L     ++ T L AP    
Sbjct: 52  RSAAILVG----RRSDAWFATRWNDRTGEW-----ADQLNRLP--KHVVSTTLAAPKW-- 98

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
                          N  ++     D+   +  L       +LV     +A + I   L 
Sbjct: 99  --------------NNATVV---SGDVLAQIAKLKAETDGDILVYASYQLARTLIEHDLA 141

Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
           D I L    +++G+G           +K    +     G 
Sbjct: 142 DEIRLVVFPVILGDGDR--LFGATSDKKALRLISTRPLGE 179


>gi|162454918|ref|YP_001617285.1| hypothetical protein sce6636 [Sorangium cellulosum 'So ce 56']
 gi|161165500|emb|CAN96805.1| hypothetical protein sce6636 [Sorangium cellulosum 'So ce 56']
          Length = 195

 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-NFMCVRRDYFG 347
            GAA+  + I  RLVD   L    +V+G G   +PL     ++ +   +R    G
Sbjct: 131 AGAALVSTLIEHRLVDEFRLIVHPVVLGGG---TPLFARRDKRISLRQIRTQNLG 182


>gi|255530589|ref|YP_003090961.1| bifunctional deaminase-reductase domain-containing protein
           [Pedobacter heparinus DSM 2366]
 gi|255343573|gb|ACU02899.1| bifunctional deaminase-reductase domain protein [Pedobacter
           heparinus DSM 2366]
          Length = 178

 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           + + GGA++  + +   LVD + +    I++G G
Sbjct: 110 IWLFGGASLTDALMKEGLVDELWMSVHPILLGNG 143


>gi|284991614|ref|YP_003410168.1| bifunctional deaminase-reductase domain-containing protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284064859|gb|ADB75797.1| bifunctional deaminase-reductase domain protein [Geodermatophilus
           obscurus DSM 43160]
          Length = 183

 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 9/76 (11%)

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG------GIP-SPLEEG 332
             L  +G   L V G A +  + +   LVD + LY   + +G G      G P +PL   
Sbjct: 107 RELKAQG--DLYVSGSATLVRALLADGLVDELHLYVYPVAVGTGIRLFPDGAPRTPLSLL 164

Query: 333 YLEKNFMCVRRDYFGS 348
             E     V    +G 
Sbjct: 165 GAESLSNGVVHLTYGP 180


>gi|126461710|ref|YP_001042824.1| CMP/dCMP deaminase, zinc-binding [Rhodobacter sphaeroides ATCC
           17029]
 gi|126103374|gb|ABN76052.1| CMP/dCMP deaminase, zinc-binding [Rhodobacter sphaeroides ATCC
           17029]
          Length = 150

 Score = 41.0 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 38/100 (38%), Gaps = 15/100 (15%)

Query: 52  CPHAEVQALEEA----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
             HAE+ A+  A    GE   G   YVTLEPC      P CA  I    I R+     DP
Sbjct: 51  TAHAEMLAIRAACATLGERLTGCDLYVTLEPC------PMCAAAISAARIARLYYGAADP 104

Query: 108 DVRVSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
                 +G +  +         + D + E+E    L  + 
Sbjct: 105 KSGGVAQGARVFAHPQCHHVPEVYDGIGEAEAAALLRGFF 144


>gi|300785030|ref|YP_003765321.1| deaminase-reductase domain-containing protein [Amycolatopsis
           mediterranei U32]
 gi|299794544|gb|ADJ44919.1| deaminase-reductase domain-containing protein [Amycolatopsis
           mediterranei U32]
          Length = 181

 Score = 41.0 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 52/171 (30%), Gaps = 32/171 (18%)

Query: 154 LKIAVSQDNMIGMAGCGSVPITGFI-SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN 212
              + S D  +   G     +T ++     V  L  +  A+LVG  T   DDP       
Sbjct: 6   YAFSCSVDGFLAGPGGDMSWLTPYLGPDPAVDALIPRIGALLVGRTTFDGDDP------- 58

Query: 213 GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC 272
                         H     + K        P  ++T               +  +    
Sbjct: 59  --------------HRGSPGEGKAFGGGWEGPQFVLT------HRPPAPVPGVTFVGDLA 98

Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
             +         + V  +L   GA VA   + + L+D I+     +++G+G
Sbjct: 99  SAVSAAREAAGQKYVN-VL---GADVARQCLEAGLLDEILALPVPVLLGDG 145


>gi|320007011|gb|ADW01861.1| bifunctional deaminase-reductase domain protein [Streptomyces
           flavogriseus ATCC 33331]
          Length = 214

 Score = 41.0 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 38/110 (34%), Gaps = 4/110 (3%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                 PV ++T +  P + +        I       L++      G  V    + GG +
Sbjct: 99  NPPFHTPVFVLTHHPRPSVEMEGGTTFHFIDATPQEVLRQAREAAGGLDVR---IGGGPS 155

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
               F+   LVD + +    IV+G G       EG LEK F        G
Sbjct: 156 TVREFLAEDLVDHLHVAVVPIVLGRGERLWDGLEG-LEKRFRAESVTTPG 204


>gi|119899283|ref|YP_934496.1| DNA-binding protein [Azoarcus sp. BH72]
 gi|119671696|emb|CAL95609.1| DNA-binding protein [Azoarcus sp. BH72]
          Length = 216

 Score = 41.0 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 17/32 (53%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           GG A    ++ + L+D + +  S +++G G  
Sbjct: 152 GGPATIRQYLRAGLIDELHIALSPVLLGRGEA 183


>gi|332557706|ref|ZP_08412028.1| hypothetical protein RSWS8N_01605 [Rhodobacter sphaeroides WS8N]
 gi|332275418|gb|EGJ20733.1| hypothetical protein RSWS8N_01605 [Rhodobacter sphaeroides WS8N]
          Length = 150

 Score = 41.0 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 10/74 (13%)

Query: 52  CPHAEVQALEEA----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
             HAE+ A+  A    GE   G   YVTLEPC      P CA  I    I R+     DP
Sbjct: 51  TAHAEMLAIRAACATLGERLTGCDLYVTLEPC------PMCAAAISAARIARLYYGAADP 104

Query: 108 DVRVSGRGLQWLSQ 121
                 +G +  + 
Sbjct: 105 KSGGVAQGARVFAH 118


>gi|155122216|gb|ABT14084.1| hypothetical protein MT325_M530L [Paramecium bursaria chlorella
           virus MT325]
          Length = 144

 Score = 41.0 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 27/96 (28%)

Query: 27  TNPSVACLIVKDGI-VIGRGVTAYGGC-----------------PHAEVQALEEA---GE 65
            N  VA L++ +   +   G                         HAE  A+  A   G 
Sbjct: 24  PNTKVAALVLDNNQNIRSTGFNGLPRGFEETTERWSKPIKYDYVVHAEANAICSAARNGA 83

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
              G T + TL PC+       CA+ II+ GI ++V
Sbjct: 84  TLAGCTLFSTLFPCNE------CAKLIIQAGISKIV 113


>gi|71020067|ref|XP_760264.1| hypothetical protein UM04117.1 [Ustilago maydis 521]
 gi|46099947|gb|EAK85180.1| hypothetical protein UM04117.1 [Ustilago maydis 521]
          Length = 529

 Score = 41.0 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 41/118 (34%), Gaps = 29/118 (24%)

Query: 5   SFDARF--MSAALRFSRWHVGLTSTNPSVACLI-----------VKDGIVIGRGVTAY-G 50
           S    +  M  AL  +   +  T T   V C+I                 +  G +    
Sbjct: 322 SLPRHYSIMLDALSEADKSLP-TDTAFCVGCVISFSSDSSDSAGAARSEYLETGYSRELP 380

Query: 51  GCPHAEVQALEEAGEE---ARGA----------TAYVTLEPCSHY-GRSPPCAQFIIE 94
           G  HAE  AL++        +GA            Y T+EPCS     + PC Q I+E
Sbjct: 381 GNTHAEQCALDKLATHFGLPQGANTRNVPTLDVDLYTTMEPCSERLSGNVPCVQRILE 438


>gi|301162372|emb|CBW21917.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 172

 Score = 41.0 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 22/36 (61%)

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           T +LV GG  +  S I + L+DS+ +Y   ++ G+G
Sbjct: 102 TDILVVGGGKLLTSLIKAGLLDSLTIYTVPVMAGKG 137


>gi|218189111|gb|EEC71538.1| hypothetical protein OsI_03859 [Oryza sativa Indica Group]
          Length = 272

 Score = 41.0 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 56/154 (36%), Gaps = 35/154 (22%)

Query: 33  CLIVKDGIVIGRGV-------------------------TAYGGCPHAEVQALEEAGE-E 66
           CL+ ++GI++G G                          T Y    HAEV A+       
Sbjct: 125 CLVSQEGIILGIGYNGFPRGCSDNKLPWAKKSAKGDPLETKYPYVVHAEVNAILNTNHAS 184

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD---DPDVRVSGRGLQWLSQKG 123
           A G   YVT+ PC+       CA+ II+ G+  V+  V+   D    V     + LS  G
Sbjct: 185 AAGQKLYVTMFPCNE------CAKIIIQSGVSEVIYFVEKRIDNSDYVYVASHKLLSMAG 238

Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
           + V +      +I +     R  E   +     +
Sbjct: 239 VKVRKHQPQMSQIPIKFQEPRNGEPSMNAASIFS 272


>gi|298247330|ref|ZP_06971135.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
           racemifer DSM 44963]
 gi|297549989|gb|EFH83855.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
           racemifer DSM 44963]
          Length = 183

 Score = 41.0 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 5/86 (5%)

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAA 297
               P+ ++T                     D  +   ++       + VT +   GGA 
Sbjct: 67  EYQVPIFVLTHTVPEKKVKGENDHLRVTFVTDGIESAFQQAKAAAGEKQVTVV---GGAD 123

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323
            A   + + LVD I +    ++ GEG
Sbjct: 124 TAQQCLRAGLVDEIHMGVVPVLFGEG 149


>gi|159036852|ref|YP_001536105.1| deaminase-reductase domain-containing protein [Salinispora
           arenicola CNS-205]
 gi|157915687|gb|ABV97114.1| bifunctional deaminase-reductase domain protein [Salinispora
           arenicola CNS-205]
          Length = 221

 Score = 41.0 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 11/86 (12%)

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL----TILVGRGVTSLLVEGGAA 297
             PV +VT          + +      +     +   L     +   R V    + GG+ 
Sbjct: 108 HTPVFVVT----HQRRDPWERPGGTTFHFVNDGIHSALGQARDVAGDRDVR---ISGGST 160

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323
              +++N+ LVD   +  S ++ G G
Sbjct: 161 TILAYLNAGLVDEFSIALSPVLFGAG 186


>gi|107029035|ref|YP_626130.1| bifunctional deaminase-reductase-like [Burkholderia cenocepacia AU
           1054]
 gi|116689806|ref|YP_835429.1| deaminase-reductase domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|105898199|gb|ABF81157.1| bifunctional deaminase-reductase-like protein [Burkholderia
           cenocepacia AU 1054]
 gi|116647895|gb|ABK08536.1| bifunctional deaminase-reductase domain protein [Burkholderia
           cenocepacia HI2424]
          Length = 177

 Score = 41.0 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
           L  LL  L  +G   + ++GG   A   I + +VD I L    IV+G+G    PL    L
Sbjct: 94  LATLLDRLAAQGHRHVYLDGGLT-AREGIKAGVVDRITLSWVPIVLGKG---IPLFGAEL 149

Query: 335 EKNFMCVR 342
            +  + + 
Sbjct: 150 PQTLLRLD 157


>gi|116250987|ref|YP_766825.1| hypothetical protein RL1220 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115255635|emb|CAK06716.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 213

 Score = 41.0 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           PV ++T    P + +A       +       L++ + +  G+ V    + GG  V   ++
Sbjct: 105 PVFVLTHRPRPSIEMADGTTFHFLNTTADDALQQAVRVANGKDVR---IGGGPTVVRDYL 161

Query: 304 NSRLVDSIILYRSQIVIGEG 323
            + LVD + +  + I++G G
Sbjct: 162 KAGLVDRLHVAITPILLGRG 181


>gi|307275263|ref|ZP_07556408.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX2134]
 gi|306508043|gb|EFM77168.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX2134]
          Length = 196

 Score = 41.0 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 33/85 (38%)

Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
           T  L+P +   E+    +  +  + +         D   L+  L       + + GG  V
Sbjct: 77  TQELSPDVYFYEDKHSYIITSHPEPSTASRTFTKEDSVTLIRRLKEEDGAGIWIVGGPKV 136

Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323
               + + L+D+ IL    + +GEG
Sbjct: 137 VQPLLAADLIDTFILTTIPLFLGEG 161


>gi|298292467|ref|YP_003694406.1| bifunctional deaminase-reductase domain protein [Starkeya novella
           DSM 506]
 gi|296928978|gb|ADH89787.1| bifunctional deaminase-reductase domain protein [Starkeya novella
           DSM 506]
          Length = 176

 Score = 41.0 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 6/78 (7%)

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           I+VT        LA     +         L   L          + V GG  +  +FI +
Sbjct: 71  IVVTS-----RPLAGAPAGVEAWREGVPALVDHLREQADED-DDVWVIGGGGLQSAFIAA 124

Query: 306 RLVDSIILYRSQIVIGEG 323
             +  + L+   +++G G
Sbjct: 125 GALRRLDLFVIPVLLGGG 142


>gi|269795846|ref|YP_003315301.1| dihydrofolate reductase [Sanguibacter keddieii DSM 10542]
 gi|269098031|gb|ACZ22467.1| dihydrofolate reductase [Sanguibacter keddieii DSM 10542]
          Length = 196

 Score = 41.0 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 55/210 (26%), Gaps = 27/210 (12%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
              +T  + VS D  +  AG          S         +  A+             L 
Sbjct: 1   MRRLTYGLNVSLDGYVSAAGDDLSW--SEPSDELFEWWLHEEQAV----------SLLLY 48

Query: 209 CR--LNGLQEHSPMRIILDPH-FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
            R     +  + P R   D         +   +     P ++ + +       +      
Sbjct: 49  GRRLWEDMSAYWPTR---DQQPGTTPAQAAYAQNWRDTPKVVFSSSLAGAGGGSPADALG 105

Query: 266 NIIYCDCRDLKKLLTIL--VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
                   D    +  L     G+  +    GA +  S + + LVD   +    +V+G G
Sbjct: 106 WDARLVSGDAVAEIARLKAGDGGLMRV---AGATLGRSAMRAGLVDEYAVVTHPVVLGGG 162

Query: 324 GIPSPLEEGYLE-KNFMCVRRDYFGSDVCL 352
              +P             V    F   V L
Sbjct: 163 ---APFFAARDRWLRLDLVETRTFDGGVVL 189


>gi|306821103|ref|ZP_07454719.1| guanine deaminase [Eubacterium yurii subsp. margaretiae ATCC
          43715]
 gi|304550796|gb|EFM38771.1| guanine deaminase [Eubacterium yurii subsp. margaretiae ATCC
          43715]
          Length = 63

 Score = 41.0 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 4  SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI 42
          +  D  FM   +  SR  V     N     ++VKD  ++
Sbjct: 10 TMIDEVFMEKTIELSRLAV--EHGNEPFGAVLVKDDEIV 46


>gi|281204851|gb|EFA79046.1| hypothetical protein PPL_08516 [Polysphondylium pallidum PN500]
          Length = 246

 Score = 41.0 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 39/125 (31%), Gaps = 29/125 (23%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYGGCP--HAEV 57
              + D  +M  AL    + V L    P    +IV      +   GV +       H E+
Sbjct: 40  TQDARDECYMRIALA---FGVTLNRERPY-GAIIVNHVSNNISCYGVNSGNDNVLSHGEI 95

Query: 58  QALEEA---------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
            A                   G      T Y + EPC      P CA   +  G+ R+V 
Sbjct: 96  AAFNNCTKLYPSPTGNDRTNPGINWANHTLYTSAEPC------PMCAAASVWRGLGRMVY 149

Query: 103 CVDDP 107
             D P
Sbjct: 150 GTDIP 154


>gi|152966620|ref|YP_001362404.1| DNA-binding protein [Kineococcus radiotolerans SRS30216]
 gi|151361137|gb|ABS04140.1| DNA-binding protein [Kineococcus radiotolerans SRS30216]
          Length = 214

 Score = 41.0 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 19/30 (63%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GGA    +F+++ L+D++ +  + + +G G
Sbjct: 152 GGAQTIRAFLDADLIDTLHVVVAPLELGSG 181


>gi|315179290|gb|ADT86204.1| zinc-binding domain protein [Vibrio furnissii NCTC 11218]
          Length = 158

 Score = 41.0 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 28/118 (23%)

Query: 1   MPVSSFDARFMSAALRFSR--WHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG------ 51
           M   + D R++  +   +      G+   +P  A ++V  +G ++        G      
Sbjct: 1   MLNPTLDYRWLRHSFALAEDAKSRGI---HP-FAAVLVDANGEILLE---QINGYLPDLD 53

Query: 52  -CPHAEVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
              HAE   + +A +  R       T YV+ EPC+       CA  I   G+ RVV  
Sbjct: 54  MTGHAERLIMTQASKLYRPDFLNQCTLYVSAEPCAM------CAGAIYWAGVGRVVYG 105


>gi|254283965|ref|ZP_04958933.1| cytosine deaminase [gamma proteobacterium NOR51-B]
 gi|219680168|gb|EED36517.1| cytosine deaminase [gamma proteobacterium NOR51-B]
          Length = 137

 Score = 41.0 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 36/105 (34%), Gaps = 17/105 (16%)

Query: 30  SVACLIVK--DGIVIGRGVT----AYGGCPHAEVQALEEAGE-EARGATAYVTLEPCSHY 82
            +  +IV      ++G+G            H E  A+ EAG  +        TL PC   
Sbjct: 11  PIGAVIVDRVTREIVGKGHNTLVQENYPYNHRETAAIREAGHIDFSRCVLVTTLSPCDI- 69

Query: 83  GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
                CA+ II       +V     DV  +    Q L   GI  D
Sbjct: 70  -----CARLIIMRQFPHPIVG----DVTNAKGNEQLLRDHGIQAD 105


>gi|329948029|ref|ZP_08294930.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328523168|gb|EGF50269.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 143

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 16/103 (15%)

Query: 30  SVACLIVK-DGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPC 79
            V  +++  +G V+     A         HAE++AL  AG         G T  VTLEPC
Sbjct: 18  PVGAVVLSPEGTVLAEAANAREAQHDPTAHAEIRALRAAGAALGDSHLDGCTLVVTLEPC 77

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                   CA  I+   + R+V+   +P     G     +   
Sbjct: 78  ------TMCAGAIVLARVARLVLGAWEPRTGACGSVRDVVRDA 114


>gi|296123847|ref|YP_003631625.1| CMP/dCMP deaminase zinc-binding protein [Planctomyces limnophilus
           DSM 3776]
 gi|296016187|gb|ADG69426.1| CMP/dCMP deaminase zinc-binding protein [Planctomyces limnophilus
           DSM 3776]
          Length = 503

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 10/141 (7%)

Query: 47  TAYGGCPHAEVQALEEAG---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           T +G   HAE++A+           GAT Y T  PC +      CA+ I+  GI RVV  
Sbjct: 339 TEFGRVVHAEMEAILSCARNCVSTVGATLYCTTFPCHN------CAKHIVAAGIERVVYV 392

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163
              P  +        ++  G   +++              R+      + L  +      
Sbjct: 393 EPYPKSKALEFHDDSIAPPGTKSEQVNGRVRFEPFVGIGPRRFFDLFSMQLGSSYPLVRK 452

Query: 164 IGMAGCGSVPITGFISKNQVH 184
              +G      +   S++++ 
Sbjct: 453 NDESGQKINW-SIQDSRSRIQ 472


>gi|284051814|ref|ZP_06382024.1| CMP/dCMP deaminase zinc-binding protein [Arthrospira platensis
          str. Paraca]
          Length = 127

 Score = 40.6 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 5  SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCPH 54
          S+D  F+  A + +      T     V  +IVKD  ++  G      G  H
Sbjct: 27 SWDEYFLMFA-KLA--ATRSTCLAFPVGAVIVKDRQILATGYNGSPSGSVH 74


>gi|326804530|ref|YP_004327401.1| conserved uncharacterised protein [Salmonella phage Vi01]
 gi|301795180|emb|CBW37898.1| conserved uncharacterised protein [Salmonella phage Vi01]
          Length = 173

 Score = 40.6 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 49/147 (33%), Gaps = 36/147 (24%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTA-YGGCP------------- 53
            M +A   + + V   +    V C+IV       +  G      G P             
Sbjct: 11  HMRSA---AAYGVTSYARRLQVGCVIVNPETDQPVAIGWNGTPPGMPNVCEMEQHGQIVT 67

Query: 54  -----HAEVQALEEAGEEAR---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
                HAE  AL    E A    G   +VT  PC      P C Q II+ G    V    
Sbjct: 68  NPCVVHAEENALMRIPENADDFTGLVMFVTHSPC------PNCTQKIIDSGKIDKVY--- 118

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMES 132
             +      G++ L   GI V RM++ 
Sbjct: 119 YREPYRIMDGIKKLMNAGIEVYRMVDD 145


>gi|170756464|ref|YP_001783000.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Clostridium botulinum B1 str. Okra]
 gi|169121676|gb|ACA45512.1| riboflavin biosynthesis protein RibD C- domain protein [Clostridium
           botulinum B1 str. Okra]
          Length = 173

 Score = 40.6 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 67/206 (32%), Gaps = 38/206 (18%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
           I + +A+S D  I     G   I G          R++ +  L GI  V+       C  
Sbjct: 5   IIMNLAISIDGYIADESGGFDWIVGQGDTAIDTAERSEFEEFLAGIDIVV---MGKNCYD 61

Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD 271
            G  +  P +++                       + T            K++   I   
Sbjct: 62  QGFAKEYPTKMV----------------------YVATSE---------EKEDEGNIRFI 90

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           C D+  +       G   + + GG  +   F+ + ++D  I+    +++G+G    PL  
Sbjct: 91  CGDIVSIFEKEKNSGKN-IFLFGGGGLIDHFVKANVIDEYIVRIIPMILGKGR---PLFL 146

Query: 332 GYLEKNFMCVRRDYFGSDVCLEYIGK 357
           G      + + +      + + Y  K
Sbjct: 147 GNNPTIQLHLDKYTVSDGIAVFYYSK 172


>gi|294661491|ref|YP_003579944.1| Cd dCMP deaminase [Klebsiella phage KP15]
 gi|292660652|gb|ADE34900.1| Cd dCMP deaminase [Klebsiella phage KP15]
          Length = 185

 Score = 40.6 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 6/90 (6%)

Query: 52  CPHAE--VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
             HAE  V  L  + E+ + AT Y T  PCS   ++           I+RVV        
Sbjct: 98  EVHAEMRVIMLAASHEQIKDATLYTTHSPCSQCAKNIEFCVAT--GMIKRVVY--LHKYD 153

Query: 110 RVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
           R     +  L Q G  V ++   E      
Sbjct: 154 RGGIEWIWRLQQYGAEVVQLDPEEMNKHFR 183


>gi|221638686|ref|YP_002524948.1| CMP/dCMP deaminase, zinc-binding [Rhodobacter sphaeroides KD131]
 gi|221159467|gb|ACM00447.1| CMP/dCMP deaminase, zinc-binding [Rhodobacter sphaeroides KD131]
          Length = 144

 Score = 40.6 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 38/100 (38%), Gaps = 15/100 (15%)

Query: 52  CPHAEVQALEEA----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
             HAE+ A+  A    GE   G   YVTLEPC      P CA  I    I R+     DP
Sbjct: 45  TAHAEMLAIRAACATLGERLTGCDLYVTLEPC------PMCAAAISAARIARLYYGAADP 98

Query: 108 DVRVSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142
                 +G +  +         + D + E+E    L  + 
Sbjct: 99  KSGGVAQGARVFAHPQCHHVPEVYDGIGEAEAAALLRGFF 138


>gi|323703213|ref|ZP_08114866.1| phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP
           cyclohydrolase [Desulfotomaculum nigrificans DSM 574]
 gi|323531872|gb|EGB21758.1| phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP
           cyclohydrolase [Desulfotomaculum nigrificans DSM 574]
          Length = 515

 Score = 40.6 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 22/95 (23%)

Query: 34  LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGAT--------------------AY 73
           +I K+G +IG G         A   ALE+AGE+A+GA                       
Sbjct: 422 VISKNGQIIGVGAGQMN-RVGAARIALEQAGEKAKGAVMASDAFFPFRDTIDEAARAGIT 480

Query: 74  VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
             ++P     R     Q   E G+  V   +    
Sbjct: 481 AVIQPGGSI-RDEESIQACNEHGMAMVFTGMRHFK 514


>gi|269928868|ref|YP_003321189.1| bifunctional deaminase-reductase domain-containing protein
           [Sphaerobacter thermophilus DSM 20745]
 gi|269788225|gb|ACZ40367.1| bifunctional deaminase-reductase domain protein [Sphaerobacter
           thermophilus DSM 20745]
          Length = 205

 Score = 40.6 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GGA+V   ++ + L+D I +    +++G G
Sbjct: 142 GGASVIQQYLRAGLLDEIHVTLVPVLLGGG 171


>gi|118592805|ref|ZP_01550194.1| CMP/dCMP deaminase, zinc-binding protein [Stappia aggregata IAM
           12614]
 gi|118434575|gb|EAV41227.1| CMP/dCMP deaminase, zinc-binding protein [Stappia aggregata IAM
           12614]
          Length = 158

 Score = 40.6 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 34/122 (27%), Gaps = 34/122 (27%)

Query: 31  VACLIVKDGIVI-GRGVT---------------AYGGC-----PHAEVQALEEAGEEARG 69
           V  +IV  G  I   G                    G       HAE  A+  A      
Sbjct: 30  VGAVIVGPGQEIRATGYNGLPRGVSGTDETRLDRPSGEKFFWVEHAERNAIYNAARAGAA 89

Query: 70  ---ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV----CVDDPDVRVSGRGLQWLSQK 122
               T YV   PC+       CA+ II+ G+  V        D             L + 
Sbjct: 90  LAGCTLYVNRFPCAD------CARAIIQSGLSCVECPPKPSQDGKLDHSFDVSEILLKEA 143

Query: 123 GI 124
           GI
Sbjct: 144 GI 145


>gi|45656557|ref|YP_000643.1| hypothetical protein LIC10659 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45599792|gb|AAS69280.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 182

 Score = 40.6 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS-DVCL 352
           G +++A + I  +L+D + ++ + IV+GEG   +  +      +   ++   F S +V L
Sbjct: 120 GSSSLAATLIEQKLIDEVRIFINPIVLGEG--KTLFQGIQNRISLKLIQTKTFQSGNVLL 177

Query: 353 EY 354
            Y
Sbjct: 178 YY 179


>gi|284990831|ref|YP_003409385.1| bifunctional deaminase-reductase domain-containing protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284064076|gb|ADB75014.1| bifunctional deaminase-reductase domain protein [Geodermatophilus
           obscurus DSM 43160]
          Length = 213

 Score = 40.6 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 3/86 (3%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                 P  ++T      + +A       +       L        G+ V    + GG  
Sbjct: 98  NPPFHTPTFVLTHRPRSPIEMAGGTTFHFLDASPAEALDVAREAAAGQDVR---IGGGPT 154

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323
           VA  FI + LVD + L +  IV+G G
Sbjct: 155 VARDFIAAGLVDHVHLVQVPIVLGRG 180


>gi|126667632|ref|ZP_01738601.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
           [Marinobacter sp. ELB17]
 gi|126627901|gb|EAZ98529.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
           [Marinobacter sp. ELB17]
          Length = 482

 Score = 40.6 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 47  TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           T +G   HAE+ AL +A   G   R A  Y T  PC +      CA+ I+  GI+ VV  
Sbjct: 329 TEFGRAVHAEMDALLQASRNGISIRDAKLYTTTFPCHN------CAKHIVVAGIKEVVYI 382

Query: 104 VDDPD 108
              P 
Sbjct: 383 EPYPK 387


>gi|251778599|ref|ZP_04821519.1| hypothetical protein CLO_1747 [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243082914|gb|EES48804.1| hypothetical protein CLO_1747 [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 318

 Score = 40.6 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 70/228 (30%), Gaps = 49/228 (21%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPI----------TGFISKNQVHLLRAQSDAILV 195
            E R +    +  S D  I  +     P+                  ++LLR   D ++V
Sbjct: 53  HEDRPYTFTSLVTSIDGRIAFSDAPQGPLISRLNKYGQGGAMADWWILNLLRTVCDGVMV 112

Query: 196 GIGTVLA---------DDPELTCRLNGLQEHSPMRIILDPHF-KLSLDSKIIKTALLA-- 243
           G GT+ A         D      R+       P  II   +   +  D ++     L   
Sbjct: 113 GAGTMNAESDFTGHIFDQELEDARIEQGMNPVPWNIITSLNGEDIPFDHRMFNEKELPLM 172

Query: 244 -----------------PVIIVTENDDP-------VLALAFRKKNINIIYCDCRDLKK-- 277
                            P I++             V A+   K  + +I    +      
Sbjct: 173 ISTSKSGLKVVEERIKNPYIVIGPLASKKDVTEEMVNAMKEAKDKVIVIATGDKAPDSTV 232

Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
              +L   G+  LLVE  + + +  +  +L+D +    S + IG   +
Sbjct: 233 AFYLLKKFGIDRLLVETPSYMHY-LVGEKLMDELFFNYSCLYIGGKAL 279


>gi|295836702|ref|ZP_06823635.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sp. SPB74]
 gi|295826168|gb|EDY44499.2| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sp. SPB74]
          Length = 201

 Score = 40.6 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 6/61 (9%)

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
           GRG+  +L+ GG A+  S   + LVD +  + + +++G G   +PL  G   +    VRR
Sbjct: 132 GRGLDVVLM-GGGALIRSAFAAGLVDVLSQHLAPVLLGAG---TPLCTGGTARTL--VRR 185

Query: 344 D 344
           D
Sbjct: 186 D 186


>gi|332671961|ref|YP_004454969.1| bifunctional deaminase-reductase domain-containing protein
           [Cellulomonas fimi ATCC 484]
 gi|332340999|gb|AEE47582.1| bifunctional deaminase-reductase domain protein [Cellulomonas fimi
           ATCC 484]
          Length = 203

 Score = 40.6 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 10/82 (12%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGVTSLLVEGGA 296
           +      V++   + D     A R +          DL + +T L    GV  +LV G  
Sbjct: 75  QLGDTRKVVVTRGDADLGWRNAERLQG---------DLVEAVTALKAEAGVERVLVPGSL 125

Query: 297 AVAHSFINSRLVDSIILYRSQI 318
           +V    + + LVD + L+   +
Sbjct: 126 SVVRQLLAAGLVDELRLFVHPV 147


>gi|218680076|ref|ZP_03527973.1| hypothetical protein RetlC8_14760 [Rhizobium etli CIAT 894]
          Length = 176

 Score = 40.6 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 6/86 (6%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             DL+  +  L       + V  G  +A S     L+D   +Y   +V+G G    P   
Sbjct: 95  GDDLEGTIRALKAERDGEIEV-AGPDMAQSLTELGLIDEYHIYLHPVVLGHGK---PYFA 150

Query: 332 GYLEKNFMCVRRDYFGSDVC-LEYIG 356
           G        V  D    +V  L Y+ 
Sbjct: 151 G-PRPPLRLVSHDRVDENVIKLTYVP 175


>gi|162147221|ref|YP_001601682.1| cytidine deaminase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209544272|ref|YP_002276501.1| CMP/dCMP deaminase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785798|emb|CAP55369.1| putative cytidine deaminase [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209531949|gb|ACI51886.1| CMP/dCMP deaminase zinc-binding [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 168

 Score = 40.6 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 21/116 (18%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVT-----AYGGCPHAE 56
           +  D   +  A+  S         +P     +V D  G V+   +            HAE
Sbjct: 6   TPTDLDLLRRAIALSADARAQGR-HPF--AALVADAQGRVVSTAINNSMPPEGDPTQHAE 62

Query: 57  VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           ++A+  A      +     T Y + EPC        CA  +    IRRVV  + + 
Sbjct: 63  LRAVAGAARILPPDAMADCTLYTSAEPCCM------CAGAVYWTNIRRVVYALSEH 112


>gi|229008029|ref|ZP_04165585.1| Bifunctional deaminase-reductase domain protein [Bacillus mycoides
           Rock1-4]
 gi|228753235|gb|EEM02717.1| Bifunctional deaminase-reductase domain protein [Bacillus mycoides
           Rock1-4]
          Length = 183

 Score = 40.6 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           + + GG  +A S    +L+D ++L  + I++GEG
Sbjct: 115 IWLCGGGELAGSLFKHKLIDQLVLKVNPIIVGEG 148


>gi|302548179|ref|ZP_07300521.1| riboflavin biosynthesis, RibD domain-containing protein
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302465797|gb|EFL28890.1| riboflavin biosynthesis, RibD domain-containing protein
           [Streptomyces himastatinicus ATCC 53653]
          Length = 212

 Score = 40.6 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 10/80 (12%)

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
           +   +N  ++  D  D  + L    G  +  +   G   +A + I   LVD   L    +
Sbjct: 110 SVEWQNSTLLEGDIVDAVRQLKASDGGDINVV---GSGDLAQTLIRHGLVDEYRLTIHPV 166

Query: 319 VIG-------EGGIPSPLEE 331
           +IG       +G IP+ LE 
Sbjct: 167 IIGTGKRLFADGAIPTALEP 186


>gi|271968229|ref|YP_003342425.1| deaminase-reductase domain-containing protein [Streptosporangium
           roseum DSM 43021]
 gi|270511404|gb|ACZ89682.1| deaminase-reductase domain-containing protein [Streptosporangium
           roseum DSM 43021]
          Length = 183

 Score = 40.6 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 11/125 (8%)

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
           ++       P ++V+   D V          N++          LT L  +    + + G
Sbjct: 68  QLADQMNDTPKLVVSTTLDKVEWQNSTLIKDNVVEE--------LTKLKEQPGKDISITG 119

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-LE 353
            A +  S + + ++D + L    IV+G G      E+G  +     +    F + V  L 
Sbjct: 120 SATLVRSLLRAGVLDELRLLVHPIVVGSG--KRLFEDGGDQVPLKLIDSQTFDTGVLYLT 177

Query: 354 YIGKN 358
           Y   +
Sbjct: 178 YAPAD 182


>gi|223984587|ref|ZP_03634714.1| hypothetical protein HOLDEFILI_02010 [Holdemania filiformis DSM
           12042]
 gi|223963434|gb|EEF67819.1| hypothetical protein HOLDEFILI_02010 [Holdemania filiformis DSM
           12042]
          Length = 184

 Score = 40.6 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 49/177 (27%), Gaps = 31/177 (17%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
                I L +AVS D  I     G   I+G   +                  TV    P 
Sbjct: 1   MAERKIILNLAVSLDGYICDPEGGFAWISGQGDRRL---------------DTV----PH 41

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
                   Q      I++            +         I +     +   A       
Sbjct: 42  YDIEAFASQVD---VIVMGRKAYEDCGLDFVAEPQTKQFWIASSKPLALEPPARWISG-- 96

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
                  +L   +  L  +    + + GGA V   FI +  VD  I+    I++G+G
Sbjct: 97  -------NLVDSVLALKKQPGKDIWLFGGAGVTDPFIRADAVDEYIVGIIPILLGQG 146


>gi|329930759|ref|ZP_08284183.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Paenibacillus sp. HGF5]
 gi|328934691|gb|EGG31191.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Paenibacillus sp. HGF5]
          Length = 183

 Score = 40.6 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
            L+  G   + V GG  +  +     LVD        I+ G G  P  L   +   N   
Sbjct: 108 QLMAEGKNLV-VNGGPGLGSTLAQLGLVDEYHFLVQPIIAGRG--PQLLAGVHDRLNLKL 164

Query: 341 VRRDYFGSDVCLE 353
           +    FGS V + 
Sbjct: 165 IETQPFGSGVVVH 177


>gi|327439885|dbj|BAK16250.1| cytosine/adenosine deaminase [Solibacillus silvestris StLB046]
          Length = 160

 Score = 40.6 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 23/130 (17%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHA------ 55
           +++ D + +   +  ++  +           ++V  DG V+        G  H       
Sbjct: 2   INNLDLKHLQRCVELAKIALEKGDE--PFGSVLVSADGEVLFEDHNHVAGGDHTQHPEFA 59

Query: 56  -EVQALEEAGEEARG-ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
               A      E R  AT Y + E C      P CA      G+ R+V          S 
Sbjct: 60  IARWAANNMKPEERIKATVYTSGEHC------PMCAAAHGWVGLGRIVYAS------SSK 107

Query: 114 RGLQWLSQKG 123
           + ++WL++ G
Sbjct: 108 QLVEWLAELG 117


>gi|294934867|ref|XP_002781251.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239891645|gb|EER13046.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 73

 Score = 40.6 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 8/73 (10%)

Query: 54  HAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD-VRV 111
           HAE+ A+  +   + R    Y TL PC        C + I++ GI  V    D       
Sbjct: 6   HAEMNAIMNKNQHDIRDCAIYTTLFPCHE------CTKLILQAGITCVYYASDSHHGTDS 59

Query: 112 SGRGLQWLSQKGI 124
           +    + L    +
Sbjct: 60  ARASRRMLRLANV 72


>gi|148545120|ref|YP_001272490.1| hypothetical protein Lreu_1919 [Lactobacillus reuteri DSM 20016]
 gi|184154452|ref|YP_001842793.1| hypothetical protein LAR_1797 [Lactobacillus reuteri JCM 1112]
 gi|227364280|ref|ZP_03848373.1| conserved hypothetical protein [Lactobacillus reuteri MM2-3]
 gi|325683479|ref|ZP_08162995.1| hypothetical protein HMPREF0536_11917 [Lactobacillus reuteri
           MM4-1A]
 gi|148532154|gb|ABQ84153.1| hypothetical protein Lreu_1919 [Lactobacillus reuteri DSM 20016]
 gi|183225796|dbj|BAG26313.1| hypothetical protein [Lactobacillus reuteri JCM 1112]
 gi|227070593|gb|EEI08923.1| conserved hypothetical protein [Lactobacillus reuteri MM2-3]
 gi|324977829|gb|EGC14780.1| hypothetical protein HMPREF0536_11917 [Lactobacillus reuteri
           MM4-1A]
          Length = 84

 Score = 40.6 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 5/84 (5%)

Query: 279 LTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
           + IL     +  L + GG  +   F+ + LVD I +       G  G PS  +       
Sbjct: 1   MEILTDEFNINRLAIVGGGKINGGFLEAGLVDEISILIGAGADGRTGQPSLFDGRPESSR 60

Query: 338 FMCVRRDYFG--SD--VCLEYIGK 357
            + ++        D  V L Y+ K
Sbjct: 61  PIALQLKDVASFDDGAVWLRYLVK 84


>gi|168181994|ref|ZP_02616658.1| riboflavin biosynthesis protein RibD C- domain protein [Clostridium
           botulinum Bf]
 gi|237796818|ref|YP_002864370.1| riboflavin biosynthesis protein RibD C- domain-containing protein
           [Clostridium botulinum Ba4 str. 657]
 gi|182674729|gb|EDT86690.1| riboflavin biosynthesis protein RibD C- domain protein [Clostridium
           botulinum Bf]
 gi|229263014|gb|ACQ54047.1| riboflavin biosynthesis protein RibD C- domain protein [Clostridium
           botulinum Ba4 str. 657]
          Length = 173

 Score = 40.6 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 65/206 (31%), Gaps = 38/206 (18%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
           I + +A+S D  I     G   I G          R++ +  L GI  V+       C  
Sbjct: 5   IIMNLAISIDGYIADESGGFDWIVGQGDTAIDTAERSEFEEFLAGIDIVV---MGKNCYD 61

Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD 271
            G  +  P +++                       + T            K++   I   
Sbjct: 62  QGFAKEYPTKMV----------------------YVATSE---------EKEDEGNIRFI 90

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
           C D+  +       G   + + GG  +   F+ +  +D  I+     ++G+G    PL  
Sbjct: 91  CGDIASIFEKEKNSGKN-IFLFGGGGLIDHFVKANAIDEYIVGIIPTILGKGR---PLFL 146

Query: 332 GYLEKNFMCVRRDYFGSDVCLEYIGK 357
           G      + + +      + + Y  K
Sbjct: 147 GNNPTIQLHLDKYTVSDGIAVFYYSK 172


>gi|83309331|ref|YP_419595.1| dihydrofolate reductase [Magnetospirillum magneticum AMB-1]
 gi|82944172|dbj|BAE49036.1| Dihydrofolate reductase [Magnetospirillum magneticum AMB-1]
          Length = 173

 Score = 40.6 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           DL +L+  L       + V GGA    +F++   +    L+   +++G  G P  L    
Sbjct: 91  DLAQLVAELKASPDGDIWVAGGAKALRAFLDLGAIGHFDLFIMPVLLG-KGRPLFLPSDR 149

Query: 334 LEKNFMCVRRDYFGSDVCLEYI 355
            ++  +   + Y    V L Y+
Sbjct: 150 GDRMTLLGAKTYINGVVRLSYV 171


>gi|320010586|gb|ADW05436.1| bifunctional deaminase-reductase domain protein [Streptomyces
           flavogriseus ATCC 33331]
          Length = 197

 Score = 40.6 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 25/73 (34%)

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
             L       LLV G   +A + ++  L D + L    +++G G    P +        +
Sbjct: 118 RELRAAEGRDLLVMGSPTLARTLLHEGLADELRLMIMPVIVGGGKTIFPGDGALRPLALV 177

Query: 340 CVRRDYFGSDVCL 352
                  G  VC 
Sbjct: 178 STAISGTGVHVCT 190


>gi|171912543|ref|ZP_02928013.1| bifunctional deaminase-reductase-like protein [Verrucomicrobium
           spinosum DSM 4136]
          Length = 203

 Score = 40.6 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GGAA    ++ + LVD + L  + + +G G
Sbjct: 142 GGAATIRQYLEAGLVDEMHLAIAPVALGHG 171


>gi|260464050|ref|ZP_05812245.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
           opportunistum WSM2075]
 gi|259030221|gb|EEW31502.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
           opportunistum WSM2075]
          Length = 216

 Score = 40.6 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 2/73 (2%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D+   +  L       LL++G A +  + + + L+D I L    +++G+G        
Sbjct: 107 GEDIIATVRRLSQEDGPDLLIQGSADLIQTLLANGLIDEIRLMIFPLLLGKG--KRLFGG 164

Query: 332 GYLEKNFMCVRRD 344
             +   F   +  
Sbjct: 165 DAMPAAFKLAKSQ 177


>gi|209520478|ref|ZP_03269237.1| bifunctional deaminase-reductase domain protein [Burkholderia sp.
           H160]
 gi|209499072|gb|EDZ99168.1| bifunctional deaminase-reductase domain protein [Burkholderia sp.
           H160]
          Length = 220

 Score = 40.6 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 15/112 (13%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           PV I+T +  P + +        I       L +      G  V    + GG      ++
Sbjct: 106 PVFILTHHARPPIEMEGGTIFHFITGGIREALDRAREAAAGMDVR---IGGGPDTIRQYL 162

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
              L+D + +  + +++G G           E  F  V     G + C+E++
Sbjct: 163 RESLIDELHIAIAPVLLGRG-----------ESLFEGVDLRALGYE-CVEFV 202


>gi|115378242|ref|ZP_01465412.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Stigmatella aurantiaca DW4/3-1]
 gi|310819676|ref|YP_003952034.1| RibD domain-containing protein [Stigmatella aurantiaca DW4/3-1]
 gi|115364749|gb|EAU63814.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Stigmatella aurantiaca DW4/3-1]
 gi|309392748|gb|ADO70207.1| RibD domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 184

 Score = 40.6 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 4/85 (4%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           DL++ ++ L  +    +LV G   +A +     L+D   +    I+ G G  P+      
Sbjct: 101 DLREAISALKAKTERGVLV-GAPKLAAALEEWGLIDEYRIVVHPIISGRG--PTLFHGLS 157

Query: 334 LEKNFMCVRRDYFGSDV-CLEYIGK 357
             ++   +    F S V  L +  K
Sbjct: 158 SARHLELLLTQRFKSGVQALHFRRK 182


>gi|118389922|ref|XP_001028006.1| Cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Tetrahymena thermophila]
 gi|89309776|gb|EAS07764.1| Cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Tetrahymena thermophila SB210]
          Length = 354

 Score = 40.6 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 34/112 (30%), Gaps = 34/112 (30%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACL-IVKDGIVIGRGVTA---------YGGCP- 53
           S+D  FM  A+   +          SV  + I K+  ++  G            YGGC  
Sbjct: 203 SWDEYFMRLAVEVKKRSNCNKR---SVGAILISKEKRILSTGYNGTPLRMKDCFYGGCER 259

Query: 54  -----------------HAEVQALEEAGEEARGA---TAYVTLEPCSHYGRS 85
                            HAE   L + G         T Y TL PC    + 
Sbjct: 260 CNQNTAQGQGLDQCWCIHAEENCLLDIGVRESKQFEPTMYTTLFPCRMCAKG 311


>gi|73539946|ref|YP_294466.1| bifunctional deaminase-reductase, C-terminal [Ralstonia eutropha
           JMP134]
 gi|72117359|gb|AAZ59622.1| bifunctional deaminase-reductase, C-terminal [Ralstonia eutropha
           JMP134]
          Length = 215

 Score = 40.6 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 3/88 (3%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
           K     PV ++T +  P  ++            +  D+         +G   + + GG +
Sbjct: 99  KPPYHVPVFVLTHHARP--SIEMEGGTTFHFVTEGIDVALARAREAAQG-RDVRLGGGVS 155

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGI 325
               ++ + LVD + L     ++G G  
Sbjct: 156 TIRQYLQAGLVDEMHLAIVPKLLGGGEA 183


>gi|256379414|ref|YP_003103074.1| CMP/dCMP deaminase zinc-binding [Actinosynnema mirum DSM 43827]
 gi|255923717|gb|ACU39228.1| CMP/dCMP deaminase zinc-binding [Actinosynnema mirum DSM 43827]
          Length = 158

 Score = 40.6 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 57/144 (39%), Gaps = 17/144 (11%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGEEA 67
            A+  +    GL      +   +   DG + G G            HAE  A   AG  A
Sbjct: 16  LAVAVAEARAGLAEGGVPIGAALFGPDGRLWGSGRNRRVQDDDASTHAETAAFRAAGRRA 75

Query: 68  --RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
             RG T   TL PC +      C+  + + GI RVV+     + R    G  WL++ G+ 
Sbjct: 76  GYRGTTMVTTLSPCWY------CSGLVRQFGISRVVIG----EARTFSGGHDWLAEHGVE 125

Query: 126 VDRMMESEGKIFLHAYLTRQVEKR 149
           +  + ++E    + A++  + E  
Sbjct: 126 IVLVDDAECAELMTAFVAARPELW 149


>gi|313123056|ref|YP_004033315.1| deoxycytidylate deaminase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312279619|gb|ADQ60338.1| Deoxycytidylate deaminase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 148

 Score = 40.6 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 34/141 (24%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------TAYGGCP--- 53
           M  AL  ++     T     V  ++VKD  ++  G                         
Sbjct: 1   MMQALVIAQRS---TCDRALVGSVLVKDKRILSTGYNGSVSGQDHCDDVGHQLVDGHCVR 57

Query: 54  --HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
             H+E+ +L    + G        YVT  PC +      C + +++ G+ ++    D  D
Sbjct: 58  TIHSEMNSLISCAKNGVSTDNTEIYVTHFPCYN------CTKHLLQAGVIKINYYYDYHD 111

Query: 109 VRVSGRGLQWLSQKGIIVDRM 129
             ++   +Q L   G+  +++
Sbjct: 112 SPLA---IQLLHDSGVPYEQI 129


>gi|182439951|ref|YP_001827670.1| hypothetical protein SGR_6158 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326780617|ref|ZP_08239882.1| bifunctional deaminase-reductase domain protein [Streptomyces cf.
           griseus XylebKG-1]
 gi|178468467|dbj|BAG22987.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326660950|gb|EGE45796.1| bifunctional deaminase-reductase domain protein [Streptomyces cf.
           griseus XylebKG-1]
          Length = 187

 Score = 40.6 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 54/179 (30%), Gaps = 46/179 (25%)

Query: 184 HLLRAQSDAILVGIGT---------VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
           H   A++DA+L+G  T         +  DDP     +    +  P  ++           
Sbjct: 41  HRQDARADALLLGRRTFEDFRGYWPLQTDDP---TGIAAYLDQVPKYVV---------SG 88

Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
            +         ++  +  + V  L   +   +I+                          
Sbjct: 89  TLTDPGWRNATVLTGDPVEEVRRLKAEEGGKDIVLTGSI--------------------- 127

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
              +AH+ I +  VD   L+    V G G    P  +GY       +    F S + L+
Sbjct: 128 --TLAHALIAAGAVDEYRLFVHPAVQGRGRRLFP--DGYELPRLRLLESREFRSGITLQ 182


>gi|170760686|ref|YP_001788692.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Clostridium botulinum A3 str. Loch Maree]
 gi|169407675|gb|ACA56086.1| riboflavin biosynthesis protein RibD C- domain protein [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 173

 Score = 40.6 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 38/206 (18%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
           I + +A+S D  I     G   I G    +     R++ +  L GI  V+       C  
Sbjct: 5   IIMNLAISIDGYIADESGGFDWIVGQGDTSIDTAERSEFEEFLAGIDIVV---MGKNCYE 61

Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD 271
            G  +  P                         V + T           +K++   I+  
Sbjct: 62  QGFAKEYP----------------------TKTVYVATSE---------KKEDEGNIHFI 90

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D+  +       G   + + GG  +   F+ + ++D  I+     ++G+G    PL  
Sbjct: 91  RGDIVSIFEKEKNSGKN-IFLFGGGGLIDHFVKANVIDEYIVGIIPTILGKGR---PLFL 146

Query: 332 GYLEKNFMCVRRDYFGSDVCLEYIGK 357
           G      + + +      + + Y  K
Sbjct: 147 GNNPTIQLHLNKYTVSDGIAVFYYSK 172


>gi|298244121|ref|ZP_06967927.1| CMP/dCMP deaminase zinc-binding [Ktedonobacter racemifer DSM 44963]
 gi|297551602|gb|EFH85467.1| CMP/dCMP deaminase zinc-binding [Ktedonobacter racemifer DSM 44963]
          Length = 170

 Score = 40.3 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 43/121 (35%), Gaps = 24/121 (19%)

Query: 2   PVSSFDARFMSAALRFSRWHVGLTSTNPSVA--CLIVKDGIVIGRGVTA----YGGCPHA 55
            +SS D + M+  L ++   +   S    V    L+ +   ++               HA
Sbjct: 7   SISSVDEKMMARTLAYANAALDKGS----VGIAALLSRRDEILDLEHNQFQETRDAIDHA 62

Query: 56  EVQALEEAG--------EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           E+  L            EE R  T Y +LEPC        C   I   G++RVV    + 
Sbjct: 63  EMVVLRRMARYLSQLSEEEKRELTLYSSLEPCLM------CMAAISFAGLKRVVFSAYNA 116

Query: 108 D 108
           D
Sbjct: 117 D 117


>gi|134081301|emb|CAK41804.1| unnamed protein product [Aspergillus niger]
          Length = 259

 Score = 40.3 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 7/50 (14%)

Query: 1  MPVSSFD-----ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG 45
          MP  S +     A FM  AL      +  T   P V C++V D  ++G G
Sbjct: 5  MPSESLESNSEHAYFMKQALLMGEKAL-ETGETP-VGCVLVYDKKIVGFG 52


>gi|9631768|ref|NP_048547.1| hypothetical protein PBCV1_A200R [Paramecium bursaria Chlorella
           virus 1]
 gi|1181363|gb|AAC96568.1| contains cytidine and deoxycytidine deaminase Zn-binding region
           signature [Paramecium bursaria Chlorella virus 1]
          Length = 118

 Score = 40.3 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 16/113 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---YGGC--PHAEV 57
           ++  D   + +A+  ++   G         C+++    +I  G        G    HAE+
Sbjct: 1   MTRLDEA-IESAIEQAKRSTGPFKH----GCVVLSGKKIISEGHNHTRKQIGTFSVHAEM 55

Query: 58  QALEEAGEEA---RGATAYVTLEPCSHYGRSPPCA---QFIIECGIRRVVVCV 104
            AL +  +           V +        S PC      + + G++ +V   
Sbjct: 56  DALWKIYDSDLYEHKKAVIVRVNDSGKLANSRPCVICMAALQQHGVKTIVYST 108


>gi|331693988|ref|YP_004330227.1| bifunctional deaminase-reductase domain-containing protein
           [Pseudonocardia dioxanivorans CB1190]
 gi|326948677|gb|AEA22374.1| bifunctional deaminase-reductase domain protein [Pseudonocardia
           dioxanivorans CB1190]
          Length = 181

 Score = 40.3 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 16/34 (47%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           + V G   +  + +   LVD + L+   + +G G
Sbjct: 116 IYVSGSGTLVRAMLADGLVDELHLFVYPVALGTG 149


>gi|289773914|ref|ZP_06533292.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces lividans TK24]
 gi|289704113|gb|EFD71542.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces lividans TK24]
          Length = 215

 Score = 40.3 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 60/175 (34%), Gaps = 29/175 (16%)

Query: 169 CGSVPITGFISKNQVHLLRAQSDAILVGIG-TVLADDPE---LTCRLNGLQ-EHSPMRII 223
                      +  V    A+S A+L+G     L D P     T      +    P  ++
Sbjct: 46  HTWAFSEDPEERRIVRETTARSGAVLLGRRLFDLVDGPGGWDDTVGYGAAEVGRPPFVVV 105

Query: 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV 283
                    +S  ++   L    + T   D V A   R +  +      RDL  +L    
Sbjct: 106 TAS----PPES--VRLTGLDWTFVTTGLPDAVAAARERAEAASADL--GRDLDVVLM--- 154

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
                     GG A+  S +++ LV+ + L+ + +V+G G   +PL  G      
Sbjct: 155 ----------GGGALIGSALDAGLVEVLSLHLAPVVLGFG---TPLFTGGTPHTL 196


>gi|256390271|ref|YP_003111835.1| bifunctional deaminase-reductase domain-containing protein
           [Catenulispora acidiphila DSM 44928]
 gi|256356497|gb|ACU69994.1| bifunctional deaminase-reductase domain protein [Catenulispora
           acidiphila DSM 44928]
          Length = 178

 Score = 40.3 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
            +  + + + +VD + L  + +V G G     L +G  +  F  +R
Sbjct: 119 RLNQALLAAGVVDELRLAIAPVVAGHGRR---LLDGLPQMRFETIR 161


>gi|326798291|ref|YP_004316110.1| bifunctional deaminase-reductase domain protein [Sphingobacterium
           sp. 21]
 gi|326549055|gb|ADZ77440.1| bifunctional deaminase-reductase domain protein [Sphingobacterium
           sp. 21]
          Length = 193

 Score = 40.3 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
            A   + +N  ++  D  +    L  L G+ +  ++  G   +A S +   L+D   L  
Sbjct: 93  EANWGKWENAKVVNGDAVEEIAKLKALPGKNM--VIW-GSVTLAQSLMKCGLIDEYHLQL 149

Query: 316 SQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
             + +G G    P  + Y+    + +++   G  V L+Y  ++L
Sbjct: 150 CPVALGGGRPLFPTGDKYINLELIDLKKYDTGI-VLLKYKPRSL 192


>gi|148555485|ref|YP_001263067.1| deaminase-reductase domain-containing protein [Sphingomonas
           wittichii RW1]
 gi|148500675|gb|ABQ68929.1| bifunctional deaminase-reductase domain protein [Sphingomonas
           wittichii RW1]
          Length = 217

 Score = 40.3 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 17/32 (53%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           GG +    ++ + LVD + L  + +++G G  
Sbjct: 156 GGVSTLRQYLAAGLVDELHLAIAPVLLGRGEA 187


>gi|302534595|ref|ZP_07286937.1| gp20 [Streptomyces sp. C]
 gi|302443490|gb|EFL15306.1| gp20 [Streptomyces sp. C]
          Length = 117

 Score = 40.3 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 50  GGCPHAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
               HAE  A+  A   + RG+T YVT  PC      P C   I   GIRRVV
Sbjct: 69  CAAVHAEANAIHHADPTQLRGSTLYVTRMPC------PACTTLIRSAGIRRVV 115


>gi|254995140|ref|ZP_05277330.1| cytosine deaminase (ssnA) [Anaplasma marginale str. Mississippi]
 gi|255003311|ref|ZP_05278275.1| cytosine deaminase (ssnA) [Anaplasma marginale str. Puerto Rico]
 gi|255004436|ref|ZP_05279237.1| cytosine deaminase (ssnA) [Anaplasma marginale str. Virginia]
          Length = 153

 Score = 40.3 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 51/155 (32%), Gaps = 23/155 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-----AYGGCPHAEVQALEEAG 64
           +M  A++ +            V  ++V +  V+                HAE+ A+ EA 
Sbjct: 8   YMRLAMQEAVSSPAEV----PVGAVVVDERGVVVSSRHNLTLRNSDPTAHAEMLAIREAC 63

Query: 65  EEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD---VRVSGRGL 116
                        YVTLEPC+       CA  I    IRR+     +     V    R  
Sbjct: 64  LHLSTHVLDNCDMYVTLEPCAM------CAYAISLSRIRRLYFGAYNAKCGGVEHGARVF 117

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSH 151
           ++      +    +E E    L ++  +   ++  
Sbjct: 118 RFCHHIPEVYGGFLERENAEILKSFFYKLRNQQHQ 152


>gi|262202492|ref|YP_003273700.1| bifunctional deaminase-reductase domain-containing protein
           [Gordonia bronchialis DSM 43247]
 gi|262085839|gb|ACY21807.1| bifunctional deaminase-reductase domain protein [Gordonia
           bronchialis DSM 43247]
          Length = 370

 Score = 40.3 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGI 325
            A +F+ + LVD + L  + IV+G G  
Sbjct: 158 TARAFLKAGLVDDLHLMIAPIVLGRGAR 185


>gi|256790033|ref|ZP_05528464.1| DNA-binding protein [Streptomyces lividans TK24]
          Length = 204

 Score = 40.3 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 60/175 (34%), Gaps = 29/175 (16%)

Query: 169 CGSVPITGFISKNQVHLLRAQSDAILVGIG-TVLADDPE---LTCRLNGLQ-EHSPMRII 223
                      +  V    A+S A+L+G     L D P     T      +    P  ++
Sbjct: 35  HTWAFSEDPEERRIVRETTARSGAVLLGRRLFDLVDGPGGWDDTVGYGAAEVGRPPFVVV 94

Query: 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV 283
                    +S  ++   L    + T   D V A   R +  +      RDL  +L    
Sbjct: 95  TAS----PPES--VRLTGLDWTFVTTGLPDAVAAARERAEAASADL--GRDLDVVLM--- 143

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
                     GG A+  S +++ LV+ + L+ + +V+G G   +PL  G      
Sbjct: 144 ----------GGGALIGSALDAGLVEVLSLHLAPVVLGFG---TPLFTGGTPHTL 185


>gi|163840537|ref|YP_001624942.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Renibacterium
           salmoninarum ATCC 33209]
 gi|162954013|gb|ABY23528.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Renibacterium
           salmoninarum ATCC 33209]
          Length = 200

 Score = 40.3 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
           GGAA    ++ + L+D + L+ +  ++G+G     L +G     F  +  D
Sbjct: 138 GGAATIRQYLAAGLIDELRLHLTPAILGQGER---LLDGLAGVEFEPILVD 185


>gi|300790768|ref|YP_003771059.1| hypothetical protein AMED_8967 [Amycolatopsis mediterranei U32]
 gi|299800282|gb|ADJ50657.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
          Length = 207

 Score = 40.3 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           D+ + +  L  R    L V G  A+  + I   LVD   L+   +V+G+G    P  +G 
Sbjct: 112 DVVEFVRDLKTRTDGELQVHGSGALLQTLIAHDLVDEYRLWLYPVVLGKGRRLFP--DGV 169

Query: 334 LEKNFMCVRRDY 345
           + K F  V   +
Sbjct: 170 VPKAFEHVETRH 181


>gi|156977644|ref|YP_001448550.1| dihydrofolate reductase [Vibrio harveyi ATCC BAA-1116]
 gi|156529238|gb|ABU74323.1| hypothetical protein VIBHAR_06432 [Vibrio harveyi ATCC BAA-1116]
          Length = 75

 Score = 40.3 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
            +G   L ++GG     +F+   L+  +++ R  I++G G   +PL     +     V +
Sbjct: 3   AKGFNELYIDGGVT-IQNFLKEDLIGKMVITRFPILLGGG---APLFGDLAQPLHFKVTK 58

Query: 344 DYFGSDVCLE--YIGK 357
                D  ++  YI +
Sbjct: 59  SEVVLDTLVKTTYIRE 74


>gi|311896167|dbj|BAJ28575.1| putative deaminase [Kitasatospora setae KM-6054]
          Length = 146

 Score = 40.3 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 18/111 (16%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAEV 57
           ++  D   +  A+  +   V   S +     L+   DG V+               H E+
Sbjct: 2   ITPADEALLRRAVELAARAV--ESGDAPYGSLLAGADGAVLAEAHNTVRRERDITAHPEL 59

Query: 58  QALEEAGEEARGA-----TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           +    A  E   A     T Y + +PC        CA  ++  G+ RVV  
Sbjct: 60  KLARWAARELEPAEAARTTLYTSCQPCGM------CAGALVRSGLGRVVFA 104


>gi|56416962|ref|YP_154036.1| cytosine deaminase [Anaplasma marginale str. St. Maries]
 gi|56388194|gb|AAV86781.1| cytosine deaminase [Anaplasma marginale str. St. Maries]
          Length = 154

 Score = 40.3 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 51/155 (32%), Gaps = 23/155 (14%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-----AYGGCPHAEVQALEEAG 64
           +M  A++ +            V  ++V +  V+                HAE+ A+ EA 
Sbjct: 9   YMRLAMQEAVSSPAEV----PVGAVVVDERGVVVSSRHNLTLRNSDPTAHAEMLAIREAC 64

Query: 65  EEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD---VRVSGRGL 116
                        YVTLEPC+       CA  I    IRR+     +     V    R  
Sbjct: 65  LHLSTHVLDNCDMYVTLEPCAM------CAYAISLSRIRRLYFGAYNAKCGGVEHGARVF 118

Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSH 151
           ++      +    +E E    L ++  +   ++  
Sbjct: 119 RFCHHIPEVYGGFLERENAEILKSFFYKLRNQQHQ 153


>gi|326384358|ref|ZP_08206039.1| bifunctional deaminase-reductase domain protein [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326196956|gb|EGD54149.1| bifunctional deaminase-reductase domain protein [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 179

 Score = 40.3 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 20/41 (48%)

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
              G   + V GG  +A  F  + ++D +++  + + +G G
Sbjct: 106 AAAGDRGVWVVGGGDLAAQFAAAGMLDEMLVSYAPVALGSG 146


>gi|148927658|ref|ZP_01811113.1| bifunctional deaminase-reductase domain protein [candidate division
           TM7 genomosp. GTL1]
 gi|147886997|gb|EDK72510.1| bifunctional deaminase-reductase domain protein [candidate division
           TM7 genomosp. GTL1]
          Length = 189

 Score = 40.3 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 4/101 (3%)

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
           V   A R             L + +  L  +    +L+ G   +     N  L+D     
Sbjct: 89  VFTKADRNSEWENTEFHRSGLIEFVEELKKQDGKDILILGSGTIVQQLANESLIDEYQFI 148

Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS-DVCLEY 354
            S IV GEG    PL +G  + +   +  + F S +V L Y
Sbjct: 149 VSPIVAGEGK---PLFKGVKQHSLKLLSVESFDSGNVVLRY 186


>gi|88855909|ref|ZP_01130571.1| cytosine/adenosine deaminase [marine actinobacterium PHSC20C1]
 gi|88814776|gb|EAR24636.1| cytosine/adenosine deaminase [marine actinobacterium PHSC20C1]
          Length = 155

 Score = 40.3 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 57/155 (36%), Gaps = 24/155 (15%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY--GGCPHAEVQA 59
           V+ FD  +M+ A+  ++  +   S +  VA L+   +  ++  G       G P A  + 
Sbjct: 6   VTKFDQ-WMTRAVAEAK--LTADSADVPVAALVFDENDNLVSIGRNERELTGDPTAHAEV 62

Query: 60  LEEAGEEARGA-------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           +      A          T  VTLEPC        CA  I++  I RVV    D     +
Sbjct: 63  VAIRAAAAATGSWRLDTMTLVVTLEPC------TMCAGAILQARIPRVVFGAWDEKAGAA 116

Query: 113 GRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142
           G     L       K  +V  + E+E    L  + 
Sbjct: 117 GSVNDLLRDRRLPHKVEVVAGIQEAECAALLTEFF 151


>gi|333026800|ref|ZP_08454864.1| putative riboflavin biosynthesis protein RibD domain-containing
           protein [Streptomyces sp. Tu6071]
 gi|332746652|gb|EGJ77093.1| putative riboflavin biosynthesis protein RibD domain-containing
           protein [Streptomyces sp. Tu6071]
          Length = 208

 Score = 40.3 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
           GG  +  + + + ++D + L+   +++G GG P   +  +  +     R + 
Sbjct: 145 GGGQIVSAALAAGVLDELRLHVVPVLLG-GGRPLFAQPLHPARVLETTRAEM 195


>gi|312195295|ref|YP_004015356.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c]
 gi|311226631|gb|ADP79486.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c]
          Length = 206

 Score = 40.3 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 10/95 (10%)

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVT 288
              ++         PV +VT          + ++     +     ++  L       G  
Sbjct: 86  WPPEAPF-----HTPVFVVT----HEKRDPWERQGGTTFHFVNDGIEAALDRAREAAGDR 136

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            + + GG A    ++N+ L+D   +  S ++ G G
Sbjct: 137 DVRIAGGGATILEYLNAGLIDEFTIALSPVLFGSG 171


>gi|284030102|ref|YP_003380033.1| bifunctional deaminase-reductase domain-containing protein
           [Kribbella flavida DSM 17836]
 gi|283809395|gb|ADB31234.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
           DSM 17836]
          Length = 185

 Score = 40.3 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 13/82 (15%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG---------- 323
           DL  ++T L  +    L+  GGA +  + I   L D I L+ +   IG G          
Sbjct: 103 DLATIITELKNQPGGDLIAYGGATLVSALIAEGLADDIHLFVNPTAIGTGLPVFPATTVP 162

Query: 324 ---GIPSPLEEGYLEKNFMCVR 342
                 +P E G  E +++  +
Sbjct: 163 LELAAATPFECGITELHYVPRK 184


>gi|222106196|ref|YP_002546987.1| CMP/dCMP deaminase zinc-binding [Agrobacterium vitis S4]
 gi|221737375|gb|ACM38271.1| CMP/dCMP deaminase zinc-binding [Agrobacterium vitis S4]
          Length = 163

 Score = 40.3 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 39/113 (34%), Gaps = 19/113 (16%)

Query: 2   PVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP----HA 55
           PV+  D   F+  + + +         N     ++V  DG V+     AY        HA
Sbjct: 5   PVTGLDHEYFLRLSFKVALRAQET--GNHPFGAILVGPDGEVLMEQENAYNPTRDMTGHA 62

Query: 56  EVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           E   +  A      E     T Y + EPC+       CA      GI RVV  
Sbjct: 63  ERVLMTRASQAYTPERLNQCTMYTSAEPCAM------CAGAAYWAGIGRVVFG 109


>gi|254466662|ref|ZP_05080073.1| guanine deaminase [Rhodobacterales bacterium Y4I]
 gi|206687570|gb|EDZ48052.1| guanine deaminase [Rhodobacterales bacterium Y4I]
          Length = 164

 Score = 40.3 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 41/113 (36%), Gaps = 20/113 (17%)

Query: 8   ARFMS--AALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
            R M    AL  +R   G     P  A ++  DG V+G GV      +    HAEV A+ 
Sbjct: 12  ERLMQDVVALSEARVAEGGV---PFSAQVVSADGRVLGAGVNTVMEDHDPTAHAEVCAIR 68

Query: 62  EAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           +A          G     + EPC+       C    +  G+  V+  V   + 
Sbjct: 69  DACARHGRTNLAGTVLLASGEPCA------LCYMAALFAGVSEVLYAVSADEA 115


>gi|82701254|ref|YP_410820.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Nitrosospira multiformis ATCC 25196]
 gi|82409319|gb|ABB73428.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
           [Nitrosospira multiformis ATCC 25196]
          Length = 489

 Score = 40.3 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 9/60 (15%)

Query: 52  CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
             HAE++A+  A   G   RG+T Y T  PC +      CA+ I+  GI +V      P 
Sbjct: 336 AVHAEMEAIISAARNGISIRGSTLYSTTYPCHN------CAKHIVAAGISKVRYIEPYPK 389


>gi|291007893|ref|ZP_06565866.1| deaminase-reductase domain-containing protein [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 197

 Score = 40.3 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
           VE G  +A S +   LVD I L    +V+G G   +P+            R   F
Sbjct: 135 VE-GPTLARSALRLGLVDVIELLICPVVVGAG---TPVLPDGFRTALSLTRERRF 185


>gi|323484081|ref|ZP_08089451.1| hypothetical protein HMPREF9474_01200 [Clostridium symbiosum
           WAL-14163]
 gi|323402523|gb|EGA94851.1| hypothetical protein HMPREF9474_01200 [Clostridium symbiosum
           WAL-14163]
          Length = 176

 Score = 40.3 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
            +  +++  L      ++ + GGA++ H  +   L+D   +     ++G G       E 
Sbjct: 94  DNPCRVVEQLKSEEGKAIWICGGASIIHPLMQGGLIDEYYISVMPTILGSGIR--LFGES 151

Query: 333 YLEKNFMCVRRDYFGSDVCLEYIGK 357
             E     VR   +     L Y+ +
Sbjct: 152 QDEIKLKLVRTQSYNGITELVYVRR 176


>gi|67900884|ref|XP_680698.1| hypothetical protein AN7429.2 [Aspergillus nidulans FGSC A4]
 gi|40742819|gb|EAA62009.1| hypothetical protein AN7429.2 [Aspergillus nidulans FGSC A4]
 gi|259483732|tpe|CBF79364.1| TPA: deoxycytidylate deaminase, putative (AFU_orthologue;
           AFUA_2G06240) [Aspergillus nidulans FGSC A4]
          Length = 314

 Score = 40.3 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 3/46 (6%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG 50
           ++D  FM  A   +            V C++V++  VI  G     
Sbjct: 233 NWDQYFMELA-SLAAQRSNCMKR--RVGCVLVRERRVISTGYNGTP 275


>gi|299532606|ref|ZP_07045995.1| hypothetical protein CTS44_17478 [Comamonas testosteroni S44]
 gi|298719409|gb|EFI60377.1| hypothetical protein CTS44_17478 [Comamonas testosteroni S44]
          Length = 215

 Score = 40.3 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P  ++T +  P L +        +       L +  T    R +    + GG A    F+
Sbjct: 105 PAFVLTHHARPSLRMQGGTDFHFVTDGIASALAQAKTAAGDRDIR---IGGGVATVRQFL 161

Query: 304 NSRLVDSIILYRSQIVIGEG 323
            +RLVD I L    +++G G
Sbjct: 162 QARLVDEIHLAIRPLLMGSG 181


>gi|291532792|emb|CBL05905.1| Cytosine/adenosine deaminases [Megamonas hypermegale ART12/1]
          Length = 158

 Score = 40.3 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 18/109 (16%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGR----GVTAYGGCPHAEVQALEEA 63
            ++  A+  S+        N     ++V  +G ++       +T      HAE   + +A
Sbjct: 5   FYLRKAIEVSKKSR--EHGNTPFGAILVDGEGNILLEQENIEITESNCSGHAETSLMIKA 62

Query: 64  GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
            ++         T Y T EPC+       CA  I    + +VV  + + 
Sbjct: 63  SKKYSKDFLWNCTLYSTAEPCAM------CAGAIYWGNVGKVVYGISEK 105


>gi|238064036|ref|ZP_04608745.1| deaminase-reductase domain-containing protein [Micromonospora sp.
           ATCC 39149]
 gi|237885847|gb|EEP74675.1| deaminase-reductase domain-containing protein [Micromonospora sp.
           ATCC 39149]
          Length = 185

 Score = 39.9 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 3/54 (5%)

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
           G  +A   I + LVD   L+ +  V+G G          +      V    F S
Sbjct: 125 GPNLAAQAIAAGLVDEYHLFITTSVVGGGKR---FFPDGVRLELELVEERAFDS 175


>gi|150864126|ref|XP_001382832.2| hypothetical protein PICST_29473 [Scheffersomyces stipitis CBS
           6054]
 gi|149385382|gb|ABN64803.2| tRNA-specific adenosine deaminase subunit [Scheffersomyces stipitis
           CBS 6054]
          Length = 276

 Score = 39.9 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 19/122 (15%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLI--VKDGIVIGRGVTAYG----GCPHAEVQALEEAG 64
           M+  L      + +  T   V+CLI  ++   ++  G         G  HAE  A++   
Sbjct: 11  MAKCLFVGYRALTVNET--PVSCLIEDIETNEILSIGYNYTNISLNGTKHAEFIAVKRLR 68

Query: 65  E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
           +     +       V++EPC        CA F+ + GI  VV    +     +G  L   
Sbjct: 69  DSNLNIDFGKVRLIVSVEPCIM------CASFLRQLGIGEVVYGCSNDRFGGNGTVLPIH 122

Query: 120 SQ 121
           S 
Sbjct: 123 SD 124


>gi|72162124|ref|YP_289781.1| hypothetical protein Tfu_1723 [Thermobifida fusca YX]
 gi|71915856|gb|AAZ55758.1| conserved hypothetical protein [Thermobifida fusca YX]
          Length = 163

 Score = 39.9 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 43/131 (32%), Gaps = 23/131 (17%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG---CPHAEV- 57
           V   D R +   +  +   +           ++V  DG V+              H E  
Sbjct: 2   VDETDVRHLRRCVELAAQALEAGDE--PFGSVLVAGDGTVLAEDHNRVASGDRTRHPEFA 59

Query: 58  ---QALEEAGEEARG-ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
               A+       R  AT Y + E C      P CA      G+ R+V          S 
Sbjct: 60  LARWAVRNLTPNERAEATVYTSGEHC------PMCAAAHGWVGLGRIVYAS------SSA 107

Query: 114 RGLQWLSQKGI 124
           + ++WL++ G+
Sbjct: 108 QLMEWLAELGV 118


>gi|329934276|ref|ZP_08284355.1| bifunctional deaminase-reductase domain protein [Streptomyces
           griseoaurantiacus M045]
 gi|329305872|gb|EGG49727.1| bifunctional deaminase-reductase domain protein [Streptomyces
           griseoaurantiacus M045]
          Length = 203

 Score = 39.9 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
           GGA+     +N+ ++D + L  + +++G G     L +G     F  V  
Sbjct: 140 GGASTVRQALNAGVIDELTLDIAPVLLGSGER---LFDGVETFGFEPVEV 186


>gi|296141542|ref|YP_003648785.1| bifunctional deaminase-reductase domain protein [Tsukamurella
           paurometabola DSM 20162]
 gi|296029676|gb|ADG80446.1| bifunctional deaminase-reductase domain protein [Tsukamurella
           paurometabola DSM 20162]
          Length = 180

 Score = 39.9 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 11/99 (11%)

Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
           D   +    +          V           A    ++  N +     D  K+   L  
Sbjct: 61  DRTPEDDPGAPFFNETTKHVV----------GANPLVEQWNNTVPLGAYDPAKI-AELKA 109

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
                + + G   +  + +   L+DS+ L+   +V+G G
Sbjct: 110 SSAGDIYISGSGRLVRALLREGLLDSLHLFVYPVVLGTG 148


>gi|300713101|ref|YP_003738913.1| Cytidine/deoxycytidylate deaminase, zinc-binding region (TBD)
           [Halalkalicoccus jeotgali B3]
 gi|299126785|gb|ADJ17122.1| Cytidine/deoxycytidylate deaminase, zinc-binding region (TBD)
           [Halalkalicoccus jeotgali B3]
          Length = 191

 Score = 39.9 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 49/158 (31%), Gaps = 27/158 (17%)

Query: 5   SFDAR----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI----GRGVTAYGGCPHAE 56
           +FD       M      ++              ++V+D  +I     R +T      H E
Sbjct: 42  NFDEFNHDEHMRETFELAQEATARGDK--PFGSVLVRDDTIIMSDSNREITEDDIRRHPE 99

Query: 57  VQ----ALEEAGEEARGA-TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
           +     A  E   + R A   Y +  PC      P CA  +   G  RVV  V    + V
Sbjct: 100 LHLAYRACREYDADERAAMVMYTSTGPC------PMCASGMATAGFGRVVYSVGSDGIAV 153

Query: 112 SGRGLQWLSQKGI------IVDRMMESEGKIFLHAYLT 143
                  +    I      +V  ++  EG+     +  
Sbjct: 154 FTGIEPTVRSAEILDGISEVVGPVLNDEGRRIHQEFDW 191


>gi|253571597|ref|ZP_04849003.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251838805|gb|EES66890.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 148

 Score = 39.9 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GG     S I + L+D I LY   +++G G
Sbjct: 85  GGGKFITSLIEASLLDEITLYIIPVMLGNG 114


>gi|189467383|ref|ZP_03016168.1| hypothetical protein BACINT_03771 [Bacteroides intestinalis DSM
           17393]
 gi|189435647|gb|EDV04632.1| hypothetical protein BACINT_03771 [Bacteroides intestinalis DSM
           17393]
          Length = 173

 Score = 39.9 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GG     S I + L+D I LY   +++G G
Sbjct: 110 GGGKFITSLIEASLLDEITLYIIPVMLGNG 139


>gi|111020551|ref|YP_703523.1| hypothetical protein RHA1_ro03562 [Rhodococcus jostii RHA1]
 gi|110820081|gb|ABG95365.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 187

 Score = 39.9 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-KNFMCVRRDYFGSDVCL 352
           GGA +A   +   L+D   +    +++G G   +P         N   V    F   V L
Sbjct: 124 GGATLAAVAVREGLIDEYAIVTHPVLVGGG---TPFFAALDNWVNLTLVETGTFPDGVVL 180


>gi|60680775|ref|YP_210919.1| hypothetical protein BF1255 [Bacteroides fragilis NCTC 9343]
 gi|60492209|emb|CAH06974.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
          Length = 148

 Score = 39.9 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GG     S I + L+D I LY   +++G G
Sbjct: 85  GGGKFITSLIEASLLDEITLYIIPVMLGNG 114


>gi|134100260|ref|YP_001105921.1| deaminase-reductase domain-containing protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133912883|emb|CAM02996.1| bifunctional deaminase-reductase domain protein [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 185

 Score = 39.9 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
           VE G  +A S +   LVD I L    +V+G G   +P+            R   F
Sbjct: 123 VE-GPTLARSALRLGLVDVIELLICPVVVGAG---TPVLPDGFRTALSLTRERRF 173


>gi|253795669|ref|YP_003038765.1| putative riboflavin biosynthesis protein RibD [Candidatus Hodgkinia
           cicadicola Dsem]
 gi|253739977|gb|ACT34312.1| putative riboflavin biosynthesis protein RibD [Candidatus Hodgkinia
           cicadicola Dsem]
          Length = 305

 Score = 39.9 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 47  TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           TA GG PHAE      A  +    + +V+L PCS +G++PPC   ++    R + V   D
Sbjct: 39  TASGGRPHAETLCSSTACRD-DATSVFVSLAPCSGFGKTPPCLYALL-PRTRYIEVGSFD 96

Query: 107 PDVRVSGRGLQWLSQKGIIVDR 128
              R S   +    + G+ +  
Sbjct: 97  ERQRDSALSIFCFKKLGVELSW 118


>gi|281210887|gb|EFA85053.1| hypothetical protein PPL_02049 [Polysphondylium pallidum PN500]
          Length = 234

 Score = 39.9 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 24/107 (22%)

Query: 8   ARFMSAA--LRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA--YGGCPHAEVQALEE 62
            ++M  A  L  ++  +  T        +IV  +G V   G+         H E+ A+  
Sbjct: 47  EKYMQIAYDLAVAKKSIFTT--------VIVAPNGTVACTGLNQNEKSAIYHGEIVAILN 98

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
                      G + Y T E C+    +   A      G  +++   
Sbjct: 99  CSAIYNKNTWEGYSLYTTGESCAMCQAAAMWA------GFDQIIYGT 139


>gi|237806939|ref|YP_002891379.1| cytidine deaminase [Tolumonas auensis DSM 9187]
 gi|237499200|gb|ACQ91793.1| cytidine deaminase [Tolumonas auensis DSM 9187]
          Length = 135

 Score = 39.9 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 11/95 (11%)

Query: 1  MPVSSFDARFMSA--ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVT----AYGGCP 53
          MP    D + M    A + S  H  +  +N  V   ++  D  +I  GV     AY    
Sbjct: 1  MPQID-DTQLMQLMDAAKASIRHAYMPYSNYPVGAAVLTADNRIIA-GVNIENAAYPAGM 58

Query: 54 HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPC 88
           AE  AL  A   ++G T +  +   S  G   PC
Sbjct: 59 CAERVALGNA--ISQGYTQFKAIAVFSPKGEISPC 91


>gi|145588846|ref|YP_001155443.1| aldehyde dehydrogenase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047252|gb|ABP33879.1| aldehyde dehydrogenase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 465

 Score = 39.9 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 18/141 (12%)

Query: 170 GSVPITGFISKNQVHLLRA-QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF 228
               +TG I   Q+   +   SDAI  G   +    P L     G +   P+ +I     
Sbjct: 275 DPKELTGPIDDEQLQYWQHLVSDAIDRGAKVI----PLLNNPSAGARRFEPVALI----- 325

Query: 229 KLSLDSKIIKTALLAPV--IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286
            +  +++++   L  P+  I+   N    +     + +   +Y   +D K L  +L    
Sbjct: 326 DVPQEARVLHEELFGPILPIVTVANSSAAIEYINNRPHPLALYWFGKDKKNLKQVL--EQ 383

Query: 287 VTSLLVEGGAAVAHSFINSRL 307
             S    GG  +   F+++ L
Sbjct: 384 TRS----GGVTINDVFLHATL 400


>gi|33322616|gb|AAQ07040.1|AF496357_2 deoxycytidylate deaminase [Lactobacillus delbrueckii subsp. lactis]
          Length = 108

 Score = 39.9 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 25/100 (25%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------TAYGGCP 53
             FM  AL  ++     T     V  ++VKD  ++  G                      
Sbjct: 9   QYFMMQALVIAQRS---TCDRALVGSVLVKDKRILSTGYNGSVSGQDHCDDVGHQLVDGH 65

Query: 54  -----HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRS 85
                H+E+ +L    + G        YVT  PC +  + 
Sbjct: 66  CVRTIHSEMNSLISCAKNGVSTDNTEIYVTHFPCYNCTKH 105


>gi|297199834|ref|ZP_06917231.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sviceus ATCC 29083]
 gi|297147509|gb|EFH28661.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sviceus ATCC 29083]
          Length = 198

 Score = 39.9 bits (92), Expect = 0.64,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
           G   +  + I+  LVD + L    +++G G   S   E   ++ F  V  
Sbjct: 133 GSPTLVRTLISEGLVDELQLIVMPVLLGGG--KSIFPEDGAKRPFELVST 180


>gi|34495582|ref|NP_899797.1| cytidine deaminase [Chromobacterium violaceum ATCC 12472]
 gi|34101437|gb|AAQ57806.1| probable Cytidine deaminase [Chromobacterium violaceum ATCC 12472]
          Length = 499

 Score = 39.9 bits (92), Expect = 0.64,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 9/70 (12%)

Query: 47  TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           T YG   HAE+ A+      G    G T Y T  PC +      CA+ +I  GI+RVV  
Sbjct: 338 TEYGRVVHAEMDAILNCARNGTPTLGTTLYCTTFPCHN------CAKHLIASGIKRVVYI 391

Query: 104 VDDPDVRVSG 113
              P  +   
Sbjct: 392 EPYPKSKAME 401


>gi|126734330|ref|ZP_01750077.1| bifunctional deaminase-reductase-like protein [Roseobacter sp.
           CCS2]
 gi|126717196|gb|EBA14060.1| bifunctional deaminase-reductase-like protein [Roseobacter sp.
           CCS2]
          Length = 175

 Score = 39.9 bits (92), Expect = 0.66,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           GG   A S +   ++D I+L R+ IV+G G   S   +   +     V    + +   LE
Sbjct: 114 GGGDFAGSLLMKGMIDRIVLKRAPIVLGGG--VSLFGQRQTKAPIRRVSTKTYDNGYVLE 171


>gi|239615513|gb|EEQ92500.1| DRAP deaminase [Ajellomyces dermatitidis ER-3]
          Length = 299

 Score = 39.9 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 60/215 (27%), Gaps = 91/215 (42%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK----------------DGIVIGRGVT-AYGG 51
            ++ A L  ++       TN  V  +++                    ++  G T    G
Sbjct: 26  HYLRACLSLAQKSPPK-PTNFRVGAILLSRTLHASTTTETTTPTYADTILSTGYTLELPG 84

Query: 52  CPHAEVQALEE-------------------AGEEARGA--------------------TA 72
             HAE  ALE+                      +AR A                      
Sbjct: 85  NTHAEQCALEKYAASHGVTEERIGDILPPPLSPDARSAGTGTGTGTDKDQERNHEQKIVL 144

Query: 73  YVTLEPCSHY--GRSPPCAQFII-------------------------------ECGIRR 99
           YVT+EPC     G +P  A+ I                                + GI +
Sbjct: 145 YVTMEPCGKRLSGNTPCAARIIQTSRSSSSSEIENKTSHGLDASNGPGSNATRRKSGIDK 204

Query: 100 VVVCVDDPDVRVSGRG-LQWLSQKGIIVDRMMESE 133
           V   V +P+  V G    + L + G+  + +   E
Sbjct: 205 VYFGVKEPETFVGGSVGCRMLDEAGVEWEVVEGME 239


>gi|83952775|ref|ZP_00961505.1| cytidine and deoxycytidylate deaminase family protein [Roseovarius
           nubinhibens ISM]
 gi|83835910|gb|EAP75209.1| cytidine and deoxycytidylate deaminase family protein [Roseovarius
           nubinhibens ISM]
          Length = 151

 Score = 39.9 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 39/122 (31%), Gaps = 20/122 (16%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIG----RGVTAYGGCPHAEVQALEEAG- 64
           M  AL               V  ++V  DG VI     R    +    HAE+  +  AG 
Sbjct: 1   MDRALD--EARAAAARGEVPVGAVLVGPDGAVIAADGNRTRAGHDPTAHAEMLVIR-AGC 57

Query: 65  -----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
                E   G   YVTLEPC+    +           + RV     DP       G +  
Sbjct: 58  AVLGVERLTGCDLYVTLEPCAMCAAAI------SAARVARVYYGAGDPKSGGVAHGARVF 111

Query: 120 SQ 121
           S 
Sbjct: 112 SH 113


>gi|302534476|ref|ZP_07286818.1| predicted protein [Streptomyces sp. C]
 gi|302443371|gb|EFL15187.1| predicted protein [Streptomyces sp. C]
          Length = 225

 Score = 39.9 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 40/129 (31%), Gaps = 26/129 (20%)

Query: 12  SAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------------HA 55
              L  +   +       +V  ++    G+V+ RG       P               HA
Sbjct: 21  RRVLELAYEALAAGGL--AVGAVLTDPAGVVLARGRNEAYESPGEGTGTGPLRGTPLAHA 78

Query: 56  EVQALEEA--GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
           E+ AL  A  G +   AT + T EPC+       CA      G+  V     DP     G
Sbjct: 79  EMNALGAARTGWDLGSATLWSTQEPCAM------CAAAAGFTGVGAVRYLAPDPWALADG 132

Query: 114 RGLQWLSQK 122
                 +  
Sbjct: 133 CDGASGADA 141


>gi|256424154|ref|YP_003124807.1| bifunctional deaminase-reductase domain protein [Chitinophaga
           pinensis DSM 2588]
 gi|256039062|gb|ACU62606.1| bifunctional deaminase-reductase domain protein [Chitinophaga
           pinensis DSM 2588]
          Length = 219

 Score = 39.9 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             ++   L  L      +LLV G + +  + +  RL+D + ++   I +G+G      +E
Sbjct: 108 SENVVDALKQLKSAEGPALLVHGSSRLVQTLLAERLIDELHMWIHPITLGKG--KQLFQE 165

Query: 332 GYLEKNFMCVRR 343
           G   + +  V  
Sbjct: 166 GTRPQQWKLVET 177


>gi|307153182|ref|YP_003888566.1| CMP/dCMP deaminase zinc-binding protein [Cyanothece sp. PCC 7822]
 gi|306983410|gb|ADN15291.1| CMP/dCMP deaminase zinc-binding protein [Cyanothece sp. PCC 7822]
          Length = 165

 Score = 39.9 bits (92), Expect = 0.69,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 49/138 (35%), Gaps = 30/138 (21%)

Query: 4   SSFDARFMSAALRFS-----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PH 54
           +  D R +   +  +     R  VG       VA L+     +I      +        H
Sbjct: 7   TEQDERMIEKVIALASDAISRNKVG-------VAALLACGDEIIVLDHNPFADTQNPLDH 59

Query: 55  AEVQALEEAG--------EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
           AE+  L +AG        E+    T Y TLEPC        C       GIRR+V     
Sbjct: 60  AEIVVLNKAGSYLTKCSQEQKSKLTLYSTLEPCLI------CLLAASFVGIRRIVYAALA 113

Query: 107 PDVRVSGRGLQWLSQKGI 124
            D    G+ ++ ++ + I
Sbjct: 114 EDANQQGQLIKGMTARTI 131


>gi|21223619|ref|NP_629398.1| hypothetical protein SCO5252 [Streptomyces coelicolor A3(2)]
 gi|256785269|ref|ZP_05523700.1| hypothetical protein SlivT_12327 [Streptomyces lividans TK24]
 gi|289769161|ref|ZP_06528539.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces lividans TK24]
 gi|9968702|emb|CAC05967.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
 gi|289699360|gb|EFD66789.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces lividans TK24]
          Length = 194

 Score = 39.9 bits (92), Expect = 0.69,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 79/214 (36%), Gaps = 26/214 (12%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
              +T  +A S D  IG     +  +  F+ +     L+++    L   G          
Sbjct: 1   MRKLTYFVACSIDGFIGGPDGDASFMVPFVDEEFFEFLKSEYPETLPTHG---------- 50

Query: 209 CRLNGLQEHSPMR---IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
            R  G+ +    R   I+     + S D   +K  + +P   + E             N+
Sbjct: 51  RRPLGIDDLPNKRFDTIV---QGRASYDLA-LKEGVTSPYAHLREYVASRTLTESPDPNV 106

Query: 266 NIIYCDCRD-LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
            II  D    +++L       G+   L  GG+AVA   ++   VD +++    +V+G  G
Sbjct: 107 EIISTDLVGRVRELKAEDSAFGIY--LC-GGSAVAGELVDE--VDELVVKTYPVVLG-TG 160

Query: 325 IPSPLEEGYLEKNFMCVRRDYFGSDVCLE-YIGK 357
           +P     G+    F+      FG+ V +  Y  K
Sbjct: 161 MPM-FGSGFEVSAFVPDSVRTFGNGVVVRTYHRK 193


>gi|163851859|ref|YP_001639902.1| CMP/dCMP deaminase zinc-binding [Methylobacterium extorquens PA1]
 gi|163663464|gb|ABY30831.1| CMP/dCMP deaminase zinc-binding [Methylobacterium extorquens PA1]
          Length = 301

 Score = 39.9 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 41/133 (30%), Gaps = 41/133 (30%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK----DGIVIGRGVTAYGGCP-------HAEV 57
           ++M  A   +R  V           +I++       VI R    +   P       HAEV
Sbjct: 127 QWMRMASEEARISVENGGG--PFGAVILQIDDETNEVI-RYWRNHNHVPEWRDPTAHAEV 183

Query: 58  QALEEAGEEA-----------------RGAT----AYVTLEPCSHYGRSPPCAQFIIECG 96
            A+  A  E                  +GAT     Y + EPC      P C   I    
Sbjct: 184 SAIRAACRELGVFSLASIKKEESKLPQKGATSHTVIYSSAEPC------PMCYAAIYWAR 237

Query: 97  IRRVVVCVDDPDV 109
           I ++V      D 
Sbjct: 238 IPKLVFAATRYDA 250


>gi|284038144|ref|YP_003388074.1| bifunctional deaminase-reductase domain protein [Spirosoma linguale
           DSM 74]
 gi|283817437|gb|ADB39275.1| bifunctional deaminase-reductase domain protein [Spirosoma linguale
           DSM 74]
          Length = 199

 Score = 39.9 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 61/218 (27%), Gaps = 28/218 (12%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFIS---KNQVHLLRAQSDAILVGIGTVLADDP 205
              + L + VS D  +         +T       +  V  L+   D+ILVG         
Sbjct: 1   MRKVILFMHVSLDGFVCGPNGEQDWMTMDDDEVGRYLVPDLQTTVDSILVGR-------- 52

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLD-SKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
                  G     P    +  +  +  + +         P I+ +               
Sbjct: 53  ---VLYQGFASFWPT---ITNNPSIPPELADFANWMNTTPKIVFS--------NTLTTVG 98

Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
                    D+   +  L  +    ++V GGA    S     L+D   +    I++G G 
Sbjct: 99  WQNARLAEADVATEIATLKQQPGGDMVVFGGAEFVASLARLDLIDEYRIKLEPIILGTG- 157

Query: 325 IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362
             +  ++          +   F S V   Y   N   Q
Sbjct: 158 -KALFKDVTERIRLTLTKAKSFDSGVVGLYYQVNRANQ 194


>gi|111020795|ref|YP_703767.1| hypothetical protein RHA1_ro03809 [Rhodococcus jostii RHA1]
 gi|110820325|gb|ABG95609.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 227

 Score = 39.9 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 53/173 (30%), Gaps = 34/173 (19%)

Query: 184 HLLRAQSDA---ILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
           H L    DA   ++ G  T  A    L       +   P    +     L   + ++ T 
Sbjct: 71  HRL-GLYDAEQRMIFGANTYRAFAQMLASSTEESEVRDPW---VTRMRSLP--ATVVSTT 124

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG---RGVTSLLVEGGAA 297
           L  P                   +  ++  D  D+   L        R   SL      A
Sbjct: 125 LEGP---------------LDWPDATVVSGDAVDVVARLKEESEVPLRSHGSL------A 163

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
           +  + + + LVD + +    ++ G+ G   P+ +G  + +   +        +
Sbjct: 164 MNRALMAAGLVDRLQVTIFPVITGQTG-DDPIFQGGADFDLELLENRTLDGHI 215


>gi|256786797|ref|ZP_05525228.1| DNA-binding protein [Streptomyces lividans TK24]
 gi|289770689|ref|ZP_06530067.1| DNA-binding protein [Streptomyces lividans TK24]
 gi|289700888|gb|EFD68317.1| DNA-binding protein [Streptomyces lividans TK24]
          Length = 215

 Score = 39.9 bits (92), Expect = 0.73,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 17/30 (56%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GG      F+++ LVD++ +  + + +G G
Sbjct: 153 GGVTTVREFLDAGLVDTLHVAVAPVTLGSG 182


>gi|104780171|ref|YP_606669.1| deoxycytidylate deaminase [Pseudomonas entomophila L48]
 gi|95109158|emb|CAK13855.1| putative deoxycytidylate deaminase [Pseudomonas entomophila L48]
          Length = 575

 Score = 39.9 bits (92), Expect = 0.73,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 9/70 (12%)

Query: 47  TAYGGCPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           T YG   HAE++AL      G  A  +T Y T  PC +      CA+ II  G+ RVV  
Sbjct: 427 TEYGRVVHAEMEALLSSSRVGVSAVDSTLYCTTYPCHN------CAKHIIAAGVERVVYV 480

Query: 104 VDDPDVRVSG 113
              P  +   
Sbjct: 481 EPYPKSKAQK 490


>gi|297623201|ref|YP_003704635.1| bifunctional deaminase-reductase domain-containing protein
           [Truepera radiovictrix DSM 17093]
 gi|297164381|gb|ADI14092.1| bifunctional deaminase-reductase domain protein [Truepera
           radiovictrix DSM 17093]
          Length = 185

 Score = 39.5 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 48/178 (26%), Gaps = 26/178 (14%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFIS---KNQVHLLRAQSDAILVGIGTVLADDP 205
              + L++  S D  I         +T       K+ V  L A  D I++G        P
Sbjct: 1   MRKLKLQVVTSVDGFIAGPNGEMDWVTHDWDDDLKSYVEGLTASVDCIVLGRRLAEGFIP 60

Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
                        P R       +L  D          P ++ T                
Sbjct: 61  HWAA--VAADPEHPER----ESGRLFTDL---------PKVVFT--------HTLETSPW 97

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
                   DL + +  L       L+  GG     S     L+D   L  + + +G G
Sbjct: 98  PNTALATGDLAEAILRLKKETGGDLIAYGGGTFVSSLTQRGLIDEFHLLVNPVALGSG 155


>gi|167898153|ref|ZP_02485555.1| riboflavin biosynthesis protein [Burkholderia pseudomallei 7894]
          Length = 190

 Score = 39.5 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 5/74 (6%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
              L      L  +GV  LLV+   A+  +   S L D ++LY            +P+  
Sbjct: 87  GLPLPDAFARLARQGVNELLVDADLALCDALFGSDLADELLLYAHP-----ARRDAPVSA 141

Query: 332 GYLEKNFMCVRRDY 345
             L      V R +
Sbjct: 142 SRLAAAIDDVARRW 155


>gi|167742542|ref|ZP_02415316.1| riboflavin biosynthesis protein [Burkholderia pseudomallei 14]
          Length = 169

 Score = 39.5 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 5/74 (6%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
              L      L  +GV  LLV+   A+  +   S L D ++LY            +P+  
Sbjct: 66  GLPLPDAFARLARQGVNELLVDADLALCDALFGSDLADELLLYAHP-----ARRDAPVSA 120

Query: 332 GYLEKNFMCVRRDY 345
             L      V R +
Sbjct: 121 SRLAAAIDDVARRW 134


>gi|83775265|dbj|BAE65387.1| unnamed protein product [Aspergillus oryzae]
          Length = 145

 Score = 39.5 bits (91), Expect = 0.75,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 38/127 (29%), Gaps = 11/127 (8%)

Query: 51  GCPHAEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
           G  HAE  ALE           R    YVT+EPC        CA  + +  I+ V     
Sbjct: 13  GTRHAEFIALERMLRNYPKSLLRSTKLYVTVEPC------VMCASALRQYRIQAVYFGCS 66

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG 165
           +     +G  L   +   I     +           L R+   + +   K     D M+ 
Sbjct: 67  NERFGGTGSILSLHTDFSIDPPYPVYGGLFSKEAVMLLRRFYIQENEKGKTRAFIDYMVA 126

Query: 166 MAGCGSV 172
                  
Sbjct: 127 PKPRPKK 133


>gi|21222115|ref|NP_627894.1| DNA-binding protein [Streptomyces coelicolor A3(2)]
 gi|5019352|emb|CAB44405.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)]
          Length = 215

 Score = 39.5 bits (91), Expect = 0.76,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 17/30 (56%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GG      F+++ LVD++ +  + + +G G
Sbjct: 153 GGVTTVREFLDAGLVDTLHVAVAPVTLGSG 182


>gi|291614788|ref|YP_003524945.1| bifunctional deaminase-reductase domain protein [Sideroxydans
           lithotrophicus ES-1]
 gi|291584900|gb|ADE12558.1| bifunctional deaminase-reductase domain protein [Sideroxydans
           lithotrophicus ES-1]
          Length = 203

 Score = 39.5 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
           L  L       L V G   +  + + + L+D + ++   + +G G       EG   + F
Sbjct: 117 LRKLKQMDAPDLWVHGSGKLIQTLLANGLIDLMHVWIFPVTLGPG--KRLFAEGTRPEGF 174

Query: 339 MCVRRD 344
             V   
Sbjct: 175 KVVDTK 180


>gi|316933997|ref|YP_004108979.1| CMP/dCMP deaminase zinc-binding protein [Rhodopseudomonas palustris
           DX-1]
 gi|315601711|gb|ADU44246.1| CMP/dCMP deaminase zinc-binding protein [Rhodopseudomonas palustris
           DX-1]
          Length = 531

 Score = 39.5 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 9/63 (14%)

Query: 54  HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           HAE+ A+ +A   G   R +T Y T  PC    R       II  GI+RVV     P  R
Sbjct: 376 HAEMAAVCDAAMRGISVRDSTLYCTTFPCHMCARH------IIAAGIKRVVYIEPYPKSR 429

Query: 111 VSG 113
              
Sbjct: 430 AKK 432


>gi|111022118|ref|YP_705090.1| cytosine deaminase [Rhodococcus jostii RHA1]
 gi|110821648|gb|ABG96932.1| cytosine deaminase [Rhodococcus jostii RHA1]
          Length = 159

 Score = 39.5 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 17/142 (11%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG--EEA 67
           A+  +          P  A L   DG ++G G            H E  A   AG   + 
Sbjct: 21  AIAEAELGK-REGGIPIGAALFAGDGSLLGSGRNRRVQHADPSVHGETDAFRAAGRQRDY 79

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
           R      TL PC +      C+  + +  I  +VV              +WL + G+ V 
Sbjct: 80  RSTIMVTTLSPCWY------CSGLVRQFNIGAIVVGESVTFTGGH----EWLRENGVDVT 129

Query: 128 RMMESEGKIFLHAYLTRQVEKR 149
            + +      +  ++  Q E  
Sbjct: 130 VLRDQHCIDLMTEFIENQPELW 151


>gi|148508325|gb|ABQ76108.1| cytosine/adenosine deaminases [uncultured haloarchaeon]
          Length = 153

 Score = 39.5 bits (91), Expect = 0.80,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 35/116 (30%), Gaps = 22/116 (18%)

Query: 3   VSSFD-----ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI----GRGVTAYGGCP 53
           +S  D        M+ A+  +R              ++V+D  ++     R  T      
Sbjct: 1   MSPPDTERSHEAHMTEAIELAREAADRGDD--PFGSVLVRDDTIVMRESNREHTESDIRR 58

Query: 54  HAEVQALEEAGEEARGA-----TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
           H E+     A +            Y + EPC      P CA  +       V+  V
Sbjct: 59  HPELHLAYRACQAYSPQERAMMAMYTSTEPC------PMCAGGMTTAHFGSVIYSV 108


>gi|238490276|ref|XP_002376375.1| cytosine deaminase, putative [Aspergillus flavus NRRL3357]
 gi|220696788|gb|EED53129.1| cytosine deaminase, putative [Aspergillus flavus NRRL3357]
          Length = 162

 Score = 39.5 bits (91), Expect = 0.81,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 18/111 (16%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVI----GRGVTAYGGCPHAEV 57
           VS  D  ++   +  +R  +    +      ++V   G VI     R VT      H E 
Sbjct: 2   VSESDINYLRRCVDLAREALEAGDS--PFGSVLVDAAGKVIYEDRNRTVTEADVTWHPEF 59

Query: 58  QALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
             ++ A +         AT Y + E C      P CA      G+ R+V  
Sbjct: 60  TIVKWAQKNLTPTERAAATVYTSGEHC------PMCAAAHANAGLGRIVYA 104


>gi|167752602|ref|ZP_02424729.1| hypothetical protein ALIPUT_00856 [Alistipes putredinis DSM 17216]
 gi|167659671|gb|EDS03801.1| hypothetical protein ALIPUT_00856 [Alistipes putredinis DSM 17216]
          Length = 197

 Score = 39.5 bits (91), Expect = 0.81,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
           T +LV GG  +  S I + L+D + +Y   ++ G+G              +         
Sbjct: 127 TDILVVGGGKLLTSLIKAGLLDILTIYTVPVMAGKG---IGFIGETFGSRWKLSESRVLD 183

Query: 348 SDVC 351
           + V 
Sbjct: 184 NGVV 187


>gi|219851527|ref|YP_002465959.1| bifunctional deaminase-reductase domain protein [Methanosphaerula
           palustris E1-9c]
 gi|219545786|gb|ACL16236.1| bifunctional deaminase-reductase domain protein [Methanosphaerula
           palustris E1-9c]
          Length = 180

 Score = 39.5 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 302 FINSRLVDSIILYRSQIVIGEG 323
           F+N  L+D I L+   +++GEG
Sbjct: 120 FLNEGLIDEIQLFIVPVILGEG 141


>gi|88854309|ref|ZP_01128976.1| hypothetical protein A20C1_08834 [marine actinobacterium PHSC20C1]
 gi|88816117|gb|EAR25972.1| hypothetical protein A20C1_08834 [marine actinobacterium PHSC20C1]
          Length = 201

 Score = 39.5 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 10/104 (9%)

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV--GRGVTSLLVEGGAAVA 299
            APV ++T    P   +            D  D    L      G+GV    + GGA+  
Sbjct: 91  HAPVFVLT--HHPHEPMEMDGGTTFHFVTDGFDAAYNLAREAADGKGVD---IAGGASTV 145

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
              + + +VD + L  + +++G G     L +G     F  V  
Sbjct: 146 RQALLAGVVDELTLDIAPVLLGSGER---LFDGIETFGFEPVEV 186


>gi|323144479|ref|ZP_08079081.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Succinatimonas hippei YIT 12066]
 gi|322415757|gb|EFY06489.1| cytidine and deoxycytidylate deaminase zinc-binding region
           [Succinatimonas hippei YIT 12066]
          Length = 170

 Score = 39.5 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 39/133 (29%), Gaps = 39/133 (29%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA--------------- 48
           S D  FM  A   S      T        +IV KDG ++  G                  
Sbjct: 9   SKDESFMEIAQAVSMRS---TCIRRRYGAVIVSKDGRIVATGYNGAPRHRANCSDLKSCL 65

Query: 49  ------YGGC-------PHAEVQALEEAGE-EARGATAYV------TLEPCSHYGRSPPC 88
                   G         HAE  A+      +  G T Y+      T +P +       C
Sbjct: 66  RAELKIKPGTHYELCRAVHAEANAIINGNPLDIVGGTLYLAGTDAATNKPTAQMRPCAMC 125

Query: 89  AQFIIECGIRRVV 101
            + I+   I RVV
Sbjct: 126 ERLILNAQITRVV 138


>gi|155370644|ref|YP_001426178.1| hypothetical protein FR483_N546L [Paramecium bursaria Chlorella
           virus FR483]
 gi|155123964|gb|ABT15831.1| hypothetical protein FR483_N546L [Paramecium bursaria Chlorella
           virus FR483]
          Length = 144

 Score = 39.5 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 29/114 (25%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGV-----------------TAYG 50
           +++  A   ++  +     +  VA L++ +   +   G                  T Y 
Sbjct: 8   KYLQLAEFQAQ--LFSKDESTKVAALVLDNNQNIRSTGFNGLPRGFEETTERWSKPTKYD 65

Query: 51  GCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
              HAE  A+  A   G    G T + TL PC+       CA+ II+ GI ++V
Sbjct: 66  YVVHAEANAICSAARNGATLAGCTLFSTLFPCNE------CAKLIIQAGIAKIV 113


>gi|260778186|ref|ZP_05887079.1| putative deaminase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606199|gb|EEX32484.1| putative deaminase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 159

 Score = 39.5 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 14/88 (15%)

Query: 34  LIVKDGIVIGRGVTA----YGGCPHAEVQALEEA-----GEEARGATAYVTLEPCSHYGR 84
           ++   G V+G+GV      +    HAEV+A+ +A         RG T   + EPC+    
Sbjct: 35  VVNSKGEVLGKGVNRVLENHDPTAHAEVEAIRDACRNTKSSHLRGLTLLASGEPCAMC-- 92

Query: 85  SPPCAQFIIECGIRRVVVCVDDPDVRVS 112
                  +       V V   D   R  
Sbjct: 93  ---YLNALFAGISEVVYVADRDEAARHG 117


>gi|282897354|ref|ZP_06305356.1| Riboflavin-specific deaminase [Raphidiopsis brookii D9]
 gi|281198006|gb|EFA72900.1| Riboflavin-specific deaminase [Raphidiopsis brookii D9]
          Length = 37

 Score = 39.5 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 7/30 (23%), Positives = 13/30 (43%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GG  +    +   LVD + L    +++G  
Sbjct: 3   GGGKLIACLLEFDLVDELWLTICPLILGSA 32


>gi|323526415|ref|YP_004228568.1| bifunctional deaminase-reductase domain-containing protein
           [Burkholderia sp. CCGE1001]
 gi|323383417|gb|ADX55508.1| bifunctional deaminase-reductase domain protein [Burkholderia sp.
           CCGE1001]
          Length = 204

 Score = 39.5 bits (91), Expect = 0.85,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 12/116 (10%)

Query: 245 VIIVTENDDP--VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
           VI V  N  P  V + +  +   N  +    D    L  L  +   +L   G   +  + 
Sbjct: 81  VIAVGLNSRPKYVFSRSLEQVGWNNAHLIKGDTVAELRKLRAQPGQTLHTWGSTVLLQTL 140

Query: 303 INSRLVDSIILYRSQI-------VIGEGGIPS---PLEEGYLEKNFMCVRRDYFGS 348
           +   LVD   L+   +       + G G +P+   P+E     K    +R +  G 
Sbjct: 141 LAHDLVDEYRLFIFPVVLGSGKRLFGSGTVPAALKPVESATSSKGATFLRLERGGR 196


>gi|116493268|ref|YP_805003.1| dihydrofolate reductase [Pediococcus pentosaceus ATCC 25745]
 gi|116103418|gb|ABJ68561.1| Dihydrofolate reductase [Pediococcus pentosaceus ATCC 25745]
          Length = 177

 Score = 39.5 bits (91), Expect = 0.85,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
             +L+  +       + + GGA +    + + L+D+ IL    I +G G
Sbjct: 97  PVELVKRIQKEKGKDVWIVGGAKLIDPLVQANLIDTYILTTVPIFLGSG 145


>gi|229491373|ref|ZP_04385197.1| riboflavin biosynthesis protein RibD domain protein [Rhodococcus
           erythropolis SK121]
 gi|229321658|gb|EEN87455.1| riboflavin biosynthesis protein RibD domain protein [Rhodococcus
           erythropolis SK121]
          Length = 191

 Score = 39.5 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 6/86 (6%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           D   ++  L       + + GG  +A   +    +D +I+ R  +V G G    P+  G 
Sbjct: 110 DPLGVVRSLKEEEGQDIWLCGGGTLAGELLPE--IDELIIKRYPVVAGAG---IPMIRGN 164

Query: 334 LEKN-FMCVRRDYFGSDVCLEYIGKN 358
            E   F     +       + ++ +N
Sbjct: 165 FEPTLFTPTATESLDDGASITWLKRN 190


>gi|330991261|ref|ZP_08315212.1| tRNA-specific adenosine deaminase [Gluconacetobacter sp. SXCC-1]
 gi|329761280|gb|EGG77773.1| tRNA-specific adenosine deaminase [Gluconacetobacter sp. SXCC-1]
          Length = 107

 Score = 39.5 bits (91), Expect = 0.87,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 13/70 (18%)

Query: 44  RGVTAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                     HAE+Q +  A     G      T YVTLEPC      P CA   I   + 
Sbjct: 2   EACHDP--SAHAEMQVMRAATRLRGGARLVDCTLYVTLEPC------PMCAAAAIHFRMG 53

Query: 99  RVVVCVDDPD 108
           R+V    DP 
Sbjct: 54  RIVFGAYDPK 63


>gi|256377992|ref|YP_003101652.1| bifunctional deaminase-reductase domain protein [Actinosynnema
           mirum DSM 43827]
 gi|255922295|gb|ACU37806.1| bifunctional deaminase-reductase domain protein [Actinosynnema
           mirum DSM 43827]
          Length = 206

 Score = 39.5 bits (91), Expect = 0.87,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 28/86 (32%), Gaps = 3/86 (3%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                 PV +VT       A   R+      + +      L       G   + V GG  
Sbjct: 89  DPPFHTPVFVVT---HERRAPWERRGGTTFHFVNDGVESALAQAREAAGDRDVRVSGGGE 145

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323
                +N+ LVD   L  S ++ G G
Sbjct: 146 TILRHLNAGLVDEFTLALSPVLFGAG 171


>gi|317473461|ref|ZP_07932755.1| RibD domain-containing protein [Anaerostipes sp. 3_2_56FAA]
 gi|316899111|gb|EFV21131.1| RibD domain-containing protein [Anaerostipes sp. 3_2_56FAA]
          Length = 180

 Score = 39.5 bits (91), Expect = 0.87,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 4/81 (4%)

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
           L + ++ L  R    + + GGA + +  I S L+    +    +++G G       EG  
Sbjct: 99  LDQFISALKDRPGKDIWICGGADLVNQLIKSGLISRFHISVIPVILGNGIR--LFHEGNP 156

Query: 335 EKNFMCVRRDYFGS--DVCLE 353
            K    +  D      D+  E
Sbjct: 157 AKQLKLISADNLNGMTDLVYE 177


>gi|298249278|ref|ZP_06973082.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
           racemifer DSM 44963]
 gi|297547282|gb|EFH81149.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
           racemifer DSM 44963]
          Length = 179

 Score = 39.5 bits (91), Expect = 0.88,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           ++ + +T L  +   +++V G   +  S +   LVD   L    I++G G       +G 
Sbjct: 96  NIAEAITALKQQPGKNIVVSGSGRLVQSLMQFGLVDEYSLLVYPIILGAGRR--LFSDGL 153

Query: 334 LEKNFMCVRRDYFGSDVCL 352
              +   +    F + V L
Sbjct: 154 NTSSLRLIEARPFSNGVVL 172


>gi|149039572|gb|EDL93734.1| deaminase domain containing 1 (predicted) [Rattus norvegicus]
          Length = 91

 Score = 39.5 bits (91), Expect = 0.88,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 8  ARFMSAALRFSRWHVGLTSTN--PSVACLIVKDGIVIGRGVTAYG 50
           ++M  A+R ++  +     N    V CL+V +  V+G+G     
Sbjct: 23 EKWMEEAMRMAKEAL----ENIEVPVGCLMVYNNEVVGKGRNEVN 63


>gi|256826275|ref|YP_003150235.1| dihydrofolate reductase [Kytococcus sedentarius DSM 20547]
 gi|256689668|gb|ACV07470.1| dihydrofolate reductase [Kytococcus sedentarius DSM 20547]
          Length = 193

 Score = 39.5 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 21/34 (61%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           + V GG  +A  F ++ L+D++ +++  + +G G
Sbjct: 123 VWVMGGGDLAGQFADAGLLDTVWVHQVPVTLGAG 156


>gi|21225889|ref|NP_631668.1| hypothetical protein SCO7627 [Streptomyces coelicolor A3(2)]
 gi|11322416|emb|CAC16729.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
          Length = 193

 Score = 39.5 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 56/185 (30%), Gaps = 39/185 (21%)

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
            + G   K    L+ A +  ++ G    + DDP       G+      +++     +  L
Sbjct: 35  WLDGDAEKQHTSLMGATTYRLMSGFAREMPDDPG----FEGITAMP--KVVFSSTLRTPL 88

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
                    L P        DPV A+   K++              L  L          
Sbjct: 89  S---WDNTELVP-------GDPVPAVRDMKRHGTRP----------LRTLGSL------- 121

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVC 351
                +  S + + LVD   +    ++ G  G    + + Y +     V    F G    
Sbjct: 122 ----TLCRSLLRAGLVDRFRVVVFPVITGATGRER-IFDQYPDVTLDLVGSRTFDGRLQL 176

Query: 352 LEYIG 356
           LEY+ 
Sbjct: 177 LEYVP 181


>gi|325962407|ref|YP_004240313.1| dihydrofolate reductase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468494|gb|ADX72179.1| dihydrofolate reductase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 220

 Score = 39.5 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
           D+ +  T    PV+++T +  PVL +        +       L++   +  G+ V    +
Sbjct: 100 DNPVFHT----PVVVLTHHPRPVLEMEGGTTFHFVDADPVSALEQARALAPGQDVR---I 152

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            GGA+    F+ + L+D + +    IV+G G
Sbjct: 153 GGGASTVRQFLEADLIDYMHIVLVPIVLGRG 183


>gi|330932344|ref|XP_003303736.1| hypothetical protein PTT_16078 [Pyrenophora teres f. teres 0-1]
 gi|311320047|gb|EFQ88163.1| hypothetical protein PTT_16078 [Pyrenophora teres f. teres 0-1]
          Length = 350

 Score = 39.5 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 8/99 (8%)

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL--VGRGVTSLLVE- 293
              A  A VI  T +      L     +  I Y D  +  +    L   G+GV  + VE 
Sbjct: 187 FAKAAGARVIATTSSAAKADILKKYGADHIINYKDTPNWGEEAAKLTPGGKGVQHV-VEV 245

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGE--GGIPSPLE 330
           GG       + +  +D +I       IG      P+ L+
Sbjct: 246 GGPTTMAQSLKAVAIDGVITIIG--FIGGMSKDQPTFLD 282


>gi|269114924|ref|YP_003302687.1| Deoxycytidylate deaminase [Mycoplasma hominis]
 gi|268322549|emb|CAX37284.1| Deoxycytidylate deaminase [Mycoplasma hominis ATCC 23114]
          Length = 158

 Score = 39.5 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 39/129 (30%), Gaps = 45/129 (34%)

Query: 17  FSRWHVGLTSTNPS--VACLIVK-DGIVIGRGVTAYGGC--------------------- 52
            ++    L S +P   V   IV  D  VI  G                            
Sbjct: 3   LAKLSA-LRSKDPLTKVGACIVSPDNYVISLGYNGMPTSYLNKEVNNDDLFTWNRPTTQN 61

Query: 53  ----------PHAEVQALEEAG----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
                      HAE  A+  A     +   G+  YVT  PC H      CA+ I++  I 
Sbjct: 62  DVLNSKYTYVVHAEANAIINANITNSKIIPGSILYVTHSPCYH------CAKLIVQSKIS 115

Query: 99  RVVVCVDDP 107
           +VV  V   
Sbjct: 116 KVVYAVAYK 124


>gi|291614782|ref|YP_003524939.1| bifunctional deaminase-reductase domain protein [Sideroxydans
           lithotrophicus ES-1]
 gi|291584894|gb|ADE12552.1| bifunctional deaminase-reductase domain protein [Sideroxydans
           lithotrophicus ES-1]
          Length = 217

 Score = 39.5 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GGA     ++ + L+D + +  S I++G G
Sbjct: 154 GGAETIRQYLLAGLIDEMHIAISPILLGSG 183


>gi|114331695|ref|YP_747917.1| CMP/dCMP deaminase, zinc-binding [Nitrosomonas eutropha C91]
 gi|114308709|gb|ABI59952.1| CMP/dCMP deaminase, zinc-binding protein [Nitrosomonas eutropha
           C91]
          Length = 165

 Score = 39.5 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 45/165 (27%), Gaps = 17/165 (10%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA---YGGCPHAE 56
           M +   D  F+   +  +   +           ++V  +G+V+              H E
Sbjct: 1   MAIKEADLHFLRRCIALAEEALEAGDE--PFGSVLVSGEGVVLLEARNQVSSGDQTRHPE 58

Query: 57  VQ-----ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQ------FIIECGIRRVVVCVD 105
            +     A     EE   AT Y + E C     +                 +   +  + 
Sbjct: 59  FEISRWAATHMTPEERNKATVYTSSEHCPMCSAAHGWVGLGRIVYASSARQLSDWLAALG 118

Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
            P   VS   +Q +    I+   + E   ++            R 
Sbjct: 119 APLPPVSLFPIQEIVPGLIVEGPVTELAEQMHALHIRRFHRTHRP 163


>gi|146340245|ref|YP_001205293.1| hypothetical protein BRADO3265 [Bradyrhizobium sp. ORS278]
 gi|146193051|emb|CAL77062.1| hypothetical protein BRADO3265 [Bradyrhizobium sp. ORS278]
          Length = 290

 Score = 39.5 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 9/74 (12%)

Query: 52  CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
             HAE  A+ +A   G    G T Y++  PCS       CA+ II+ GI R++    +PD
Sbjct: 18  TEHAERNAIYKAAARGVSTLGCTIYLSWFPCSD------CARAIIQSGIERLICVASEPD 71

Query: 109 VRVSGRGLQWLSQK 122
                  ++++   
Sbjct: 72  DPQWSEDIRFILMA 85


>gi|302562650|ref|ZP_07314992.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces griseoflavus Tu4000]
 gi|302480268|gb|EFL43361.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces griseoflavus Tu4000]
          Length = 185

 Score = 39.5 bits (91), Expect = 0.93,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
           G  +A   I + LVD   L+ +  V+G G          +  +   V +  F S
Sbjct: 125 GPNLAAQAIAAGLVDEYHLFVTTSVVGGGKR---FFPDGVRLDLDLVEQRAFDS 175


>gi|329947524|ref|ZP_08294716.1| guanine deaminase family protein [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328524214|gb|EGF51287.1| guanine deaminase family protein [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 160

 Score = 39.5 bits (91), Expect = 0.93,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 35/87 (40%), Gaps = 17/87 (19%)

Query: 29  PSVACLIVKDGIVIGR-GVTAYG--GCP--HAEVQALEEA----GE-EARGATAYVTLEP 78
           P V  +IV     I   GV      G P  HAE+ A+ +A    GE + RG T   T EP
Sbjct: 29  PFVG-VIVDGQQAISEFGVNRVQETGDPSAHAEIVAIRDALSSSGETDLRGTTLLATGEP 87

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVD 105
           C    R        I   I  + V VD
Sbjct: 88  CGMCYRHA------INARITDIRVAVD 108


>gi|118578520|ref|YP_899770.1| CMP/dCMP deaminase [Pelobacter propionicus DSM 2379]
 gi|118501230|gb|ABK97712.1| CMP/dCMP deaminase, zinc-binding protein [Pelobacter propionicus
           DSM 2379]
          Length = 204

 Score = 39.5 bits (91), Expect = 0.93,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 57/150 (38%), Gaps = 29/150 (19%)

Query: 15  LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEA------- 63
           ++ SR +V   S  P  A +  +DG++I  G+           HAE+ AL  A       
Sbjct: 36  IQLSRLNVCHGSGGPFGAAVFGRDGMLIAPGINLVASSNCSLLHAEMVALACAQQALGRF 95

Query: 64  --GEEARGAT-AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS-------- 112
             G+  R A   Y + EPC+    + P +      G+  +V    D D R          
Sbjct: 96  DIGDGGRVACDLYASTEPCAMCFGAIPWS------GVSGLVCGARDRDARAVGFDEGPKL 149

Query: 113 GRGLQWLSQKGI-IVDRMMESEGKIFLHAY 141
              +  L ++GI +   ++  E    L  Y
Sbjct: 150 SDWVGALGRRGISVERDLLRHEACSVLREY 179


>gi|332879019|ref|ZP_08446731.1| riboflavin biosynthesis protein RibD protein [Capnocytophaga sp.
           oral taxon 329 str. F0087]
 gi|332683032|gb|EGJ55917.1| riboflavin biosynthesis protein RibD protein [Capnocytophaga sp.
           oral taxon 329 str. F0087]
          Length = 172

 Score = 39.5 bits (91), Expect = 0.94,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           L+V GG  +  S I + L+DS+ +Y   +++G+G
Sbjct: 105 LMV-GGGRLLTSLIKAELLDSLTIYTVPVMVGKG 137


>gi|261199478|ref|XP_002626140.1| DRAP deaminase [Ajellomyces dermatitidis SLH14081]
 gi|239594348|gb|EEQ76929.1| DRAP deaminase [Ajellomyces dermatitidis SLH14081]
          Length = 299

 Score = 39.5 bits (91), Expect = 0.94,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 60/215 (27%), Gaps = 91/215 (42%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK----------------DGIVIGRGVT-AYGG 51
            ++ A L  ++       TN  V  +++                    ++  G T    G
Sbjct: 26  HYLRACLSLAQKSPPK-PTNFRVGAILLSRTLHASATTETTTQTYADTILSTGYTLELPG 84

Query: 52  CPHAEVQALEE-------------------AGEEARGA--------------------TA 72
             HAE  ALE+                      +AR A                      
Sbjct: 85  NTHAEQCALEKYAASHGVTDERIGDILPPPLSPDARSAGTGTGTGTDKDQERNHEQKIVL 144

Query: 73  YVTLEPCSHY--GRSPPCAQFII-------------------------------ECGIRR 99
           YVT+EPC     G +P  A+ I                                + GI +
Sbjct: 145 YVTMEPCGKRLSGNTPCAARIIQTSRSSSSSEIENKTSHGLDASNGPGSNATRRKSGIDK 204

Query: 100 VVVCVDDPDVRVSGRG-LQWLSQKGIIVDRMMESE 133
           V   V +P+  V G    + L + G+  + +   E
Sbjct: 205 VYFGVKEPETFVGGSVGCRMLDEAGVEWEVVEGME 239


>gi|84687886|ref|ZP_01015753.1| RibD C-terminal domain protein [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84664080|gb|EAQ10577.1| RibD C-terminal domain protein [Rhodobacterales bacterium HTCC2654]
          Length = 178

 Score = 39.5 bits (91), Expect = 0.95,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
              P+ +++           R+ ++ +     +D + L+ ++   G T   ++GGA + H
Sbjct: 67  GDKPIRVMSHALTREDIPEARRSSVEVT---RQDPQALMDMVEIEGWTRAYIDGGA-LVH 122

Query: 301 SFINSRLVDSIILYRSQIVIGEG 323
           SF+ + L+  + +    I++G+G
Sbjct: 123 SFLRAGLIADMTITIIPILLGQG 145


>gi|256783071|ref|ZP_05521502.1| hypothetical protein SlivT_01120 [Streptomyces lividans TK24]
          Length = 189

 Score = 39.1 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 56/185 (30%), Gaps = 39/185 (21%)

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
            + G   K    L+ A +  ++ G    + DDP       G+      +++     +  L
Sbjct: 31  WLDGDAEKQHTSLMGATTYRLMSGFAREMPDDPG----FEGITAMP--KVVFSSTLRTPL 84

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
                    L P        DPV A+   K++              L  L          
Sbjct: 85  S---WDNTELVP-------GDPVPAVRDMKRHGTRP----------LRTLGSL------- 117

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVC 351
                +  S + + LVD   +    ++ G  G    + + Y +     V    F G    
Sbjct: 118 ----TLCRSLLRAGLVDRFRVVVFPVITGATGRER-IFDQYPDVTLDLVASRTFDGRLQL 172

Query: 352 LEYIG 356
           LEY+ 
Sbjct: 173 LEYVP 177


>gi|255658905|ref|ZP_05404314.1| cytidine/deoxycytidylate deaminase family protein [Mitsuokella
           multacida DSM 20544]
 gi|260848854|gb|EEX68861.1| cytidine/deoxycytidylate deaminase family protein [Mitsuokella
           multacida DSM 20544]
          Length = 153

 Score = 39.1 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 31/104 (29%), Gaps = 33/104 (31%)

Query: 32  ACLIVKDGIVIGRGV---------------------TAYGG-------CPHAEVQALEEA 63
             +IVKD I+I  G                          G         HAE  A+  A
Sbjct: 33  GAIIVKDKIIISTGYNGAPRGEANCIDTGNCERERLHVPKGQNYELCVAVHAEQNAIINA 92

Query: 64  GEEA-RGATAY-VTLEPCSHYGRSPP---CAQFIIECGIRRVVV 102
              A  GAT Y V +          P   C + +    + +VV 
Sbjct: 93  DSAAMEGATIYIVGVNADGSLASGKPCLLCRRMLRNAKLAKVVY 136


>gi|169772375|ref|XP_001820656.1| cytosine deaminase [Aspergillus oryzae RIB40]
 gi|83768517|dbj|BAE58654.1| unnamed protein product [Aspergillus oryzae]
          Length = 162

 Score = 39.1 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 18/111 (16%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVI----GRGVTAYGGCPHAEV 57
           VS  D  ++   +  +R  +    +      ++V   G VI     R VT      H E 
Sbjct: 2   VSESDINYLRRCVDLAREALEAGDS--PFGSVLVDAAGKVIYEDRNRTVTEADVTWHPEF 59

Query: 58  QALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
             ++ A +         AT Y + E C      P CA      G+ R+V  
Sbjct: 60  TIVKWAQKNLTPTERAAATVYTSGEHC------PMCAAAHANAGLGRIVYA 104


>gi|284991859|ref|YP_003410413.1| bifunctional deaminase-reductase domain-containing protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284065104|gb|ADB76042.1| bifunctional deaminase-reductase domain protein [Geodermatophilus
           obscurus DSM 43160]
          Length = 188

 Score = 39.1 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           GG  +  +F    LVD   LY + +VIG G      E      +   V    FG+ V L
Sbjct: 124 GGVDLVETFRRLDLVDQYRLYINPVVIGRGRR--LFETADDPTDLELVENRRFGNGVVL 180


>gi|84494756|ref|ZP_00993875.1| hypothetical protein JNB_08159 [Janibacter sp. HTCC2649]
 gi|84384249|gb|EAQ00129.1| hypothetical protein JNB_08159 [Janibacter sp. HTCC2649]
          Length = 220

 Score = 39.1 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 3/86 (3%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                 PV ++T +    + +        +       L           +    + GG  
Sbjct: 96  NPPFHTPVFVMTHHPHESIEMDGGTTFHFVAGTPAEVLATARESAGDLDIR---IGGGPT 152

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323
           +   F+++ L+D + L  + IV+G G
Sbjct: 153 IVREFLSAGLIDHLHLVVTPIVLGRG 178


>gi|239944699|ref|ZP_04696636.1| bifunctional deaminase-reductase domain protein [Streptomyces
           roseosporus NRRL 15998]
 gi|239991163|ref|ZP_04711827.1| bifunctional deaminase-reductase domain protein [Streptomyces
           roseosporus NRRL 11379]
 gi|291448159|ref|ZP_06587549.1| bifunctional deaminase-reductase domain-containing protein
           [Streptomyces roseosporus NRRL 15998]
 gi|291351106|gb|EFE78010.1| bifunctional deaminase-reductase domain-containing protein
           [Streptomyces roseosporus NRRL 15998]
          Length = 186

 Score = 39.1 bits (90), Expect = 0.97,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
           G  +A   I + LVD   L+ +  V+G G          +  +   V    F
Sbjct: 125 GPNLAAQAIAAGLVDEYHLFITTSVVGGGKR---FFPDGVRLDLELVEERAF 173


>gi|20093154|ref|NP_619229.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase [Methanosarcina
           acetivorans C2A]
 gi|19918495|gb|AAM07709.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase [Methanosarcina
           acetivorans C2A]
          Length = 223

 Score = 39.1 bits (90), Expect = 0.97,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 55/158 (34%), Gaps = 25/158 (15%)

Query: 189 QSDAILVGIGTVLA-------DDPELTCRLNGLQEHSP---------MRIILDPHFKLSL 232
           + DA++VG  T            P             P           +I D    L  
Sbjct: 35  EPDAMIVGSNTAKTGTQFFCEKIPP----EEEADFKKPEILPEDTRAYWMIADSRGILEG 90

Query: 233 DSKIIKTALLAP--VIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGR-GV 287
              + + +      +++V+E          +++N + I    +  D+++ L I   + G 
Sbjct: 91  MMHVFRRSEYCKDVIVLVSEKTPEPYLNYLKERNYDFIQAGAERVDVRQALEIANEKYGF 150

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             ++ + G  +    +   +V+ I L  +  ++G+ G 
Sbjct: 151 KLVVSDSGGILNSILLEQGIVEEISLVLTPEIVGKNGT 188


>gi|168333324|ref|ZP_02691608.1| hypothetical protein Epulo_00570 [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 176

 Score = 39.1 bits (90), Expect = 0.98,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GGA +   F N  L+D   +    I++G G
Sbjct: 115 GGANIISQFHNENLIDEYWITIIPIILGNG 144


>gi|146318731|ref|YP_001198443.1| dihydrofolate reductase [Streptococcus suis 05ZYH33]
 gi|145689537|gb|ABP90043.1| Dihydrofolate reductase [Streptococcus suis 05ZYH33]
          Length = 77

 Score = 39.1 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 22/43 (51%)

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            L  R    + + GGA++    + + ++D +I+     ++G+G
Sbjct: 2   ELRSREGGDIWLSGGASLVQDCLEAGVIDHLIIGIIPTILGDG 44


>gi|77918274|ref|YP_356089.1| cytosine/adenosine deaminase [Pelobacter carbinolicus DSM 2380]
 gi|77544357|gb|ABA87919.1| cytosine/adenosine deaminase [Pelobacter carbinolicus DSM 2380]
          Length = 193

 Score = 39.1 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 29/157 (18%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAY----GGCPHAEVQALEEA-- 63
           M  A+  +  ++   S  P  A +  +  G +I  GV           HAE+ AL  A  
Sbjct: 32  MRLAIELAEHNIRHGSGGPFGAAVFDLDSGRLIAPGVNLVTSTCCSVAHAELVALMLAQK 91

Query: 64  -------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR------ 110
                   +  R A    + EPC+    + P A      G++++     + D R      
Sbjct: 92  YVGSFSLADAGRNAELTSSTEPCAMCLGALPWA------GLKQLACGARETDARAVGFDE 145

Query: 111 --VSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTR 144
                +    L ++GI ++  +   +    L  Y   
Sbjct: 146 GDKPPQWPGLLEKRGIRVLRDICRPQAVAVLQQYRRM 182


>gi|323487785|ref|ZP_08093043.1| pyrimidine reductase [Planococcus donghaensis MPA1U2]
 gi|323398519|gb|EGA91307.1| pyrimidine reductase [Planococcus donghaensis MPA1U2]
          Length = 178

 Score = 39.1 bits (90), Expect = 1.00,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 2/71 (2%)

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
             LLV G A +  + +   L+D + L    +V+GEG      +E   +K F         
Sbjct: 109 QRLLVYGSAELIETLLRHDLIDELHLMTFPLVLGEG--KRLFKENADQKMFNLQNVRSTD 166

Query: 348 SDVCLEYIGKN 358
           S V +     +
Sbjct: 167 SGVLIASYAPD 177


>gi|108805120|ref|YP_645057.1| bifunctional deaminase-reductase-like protein [Rubrobacter
           xylanophilus DSM 9941]
 gi|108766363|gb|ABG05245.1| bifunctional deaminase-reductase-like protein [Rubrobacter
           xylanophilus DSM 9941]
          Length = 179

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 3/80 (3%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             DL + +  L  +  T + V G   +  + +   LVD   L    +V+G G     L +
Sbjct: 94  GADLAQEIADLKRQAGTDITVHGSPTLVRTLMRHDLVDRYRLLVYPLVLGGGKR---LFD 150

Query: 332 GYLEKNFMCVRRDYFGSDVC 351
           G +            G +V 
Sbjct: 151 GGVPARLRLSESRVLGPEVV 170


>gi|289766953|ref|ZP_06526331.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces lividans TK24]
 gi|289697152|gb|EFD64581.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces lividans TK24]
          Length = 193

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 56/185 (30%), Gaps = 39/185 (21%)

Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
            + G   K    L+ A +  ++ G    + DDP       G+      +++     +  L
Sbjct: 35  WLDGDAEKQHTSLMGATTYRLMSGFAREMPDDPG----FEGITAMP--KVVFSSTLRTPL 88

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
                    L P        DPV A+   K++              L  L          
Sbjct: 89  S---WDNTELVP-------GDPVPAVRDMKRHGTRP----------LRTLGSL------- 121

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVC 351
                +  S + + LVD   +    ++ G  G    + + Y +     V    F G    
Sbjct: 122 ----TLCRSLLRAGLVDRFRVVVFPVITGATGRER-IFDQYPDVTLDLVASRTFDGRLQL 176

Query: 352 LEYIG 356
           LEY+ 
Sbjct: 177 LEYVP 181


>gi|291165047|gb|ADD81075.1| gp077 [Rhodococcus phage ReqiPoco6]
          Length = 195

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 32/112 (28%), Gaps = 39/112 (34%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYG------------- 50
           S+D   M  A+  +            V  ++   D  +I  G                  
Sbjct: 7   SWDEYGMKLAVHAAERADCTRR---QVGAVLMAADRSIISSGYNGGPSKGKSCLKGECPR 63

Query: 51  GC-PHAEVQA---------------------LEEAGEEARGATAYVTLEPCS 80
           G   HAE+ A                     L  A  +  G+T Y+T EPC 
Sbjct: 64  GRLTHAELPADSAYDTGGGTCVALHAEWNVLLRTAWHQFEGSTLYITEEPCH 115


>gi|296128206|ref|YP_003635456.1| bifunctional deaminase-reductase domain protein [Cellulomonas
           flavigena DSM 20109]
 gi|296020021|gb|ADG73257.1| bifunctional deaminase-reductase domain protein [Cellulomonas
           flavigena DSM 20109]
          Length = 188

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 3/59 (5%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           GGA +        LVD ++L    + +G G    PL    +        +  FG    L
Sbjct: 124 GGAILGAEAFRHGLVDEVVLMLCPVAVGGGKPALPLG---VRLGLELREQRGFGDGTVL 179


>gi|50086283|ref|YP_047793.1| putative cytidine / deoxycytidylate deaminase family protein
           [Acinetobacter sp. ADP1]
 gi|49532259|emb|CAG69971.1| putative cytidine / deoxycytidylate deaminase family protein
           [Acinetobacter sp. ADP1]
          Length = 519

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 11/79 (13%)

Query: 35  IVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQF 91
           I+K+  +  + +T YG   HAE+ AL          +GAT +VT  PC +      CA+ 
Sbjct: 354 ILKESKI--KKITEYGRVVHAEMDALLSCSRSNISTQGATLFVTTFPCHN------CAKH 405

Query: 92  IIECGIRRVVVCVDDPDVR 110
           II  GI +VV     P  +
Sbjct: 406 IISAGIEKVVFVEPYPKSK 424


>gi|226309899|ref|YP_002769793.1| hypothetical protein BBR47_03120 [Brevibacillus brevis NBRC 100599]
 gi|226092847|dbj|BAH41289.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 183

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 22/34 (64%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           L + GG  +A + +  +L+D ++L  + +++GEG
Sbjct: 115 LWLCGGGELAGALLAHQLIDQLVLKVNPVMVGEG 148


>gi|302389269|ref|YP_003825090.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermosediminibacter oceani DSM 16646]
 gi|302199897|gb|ADL07467.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermosediminibacter oceani DSM 16646]
          Length = 438

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 30/92 (32%), Gaps = 3/92 (3%)

Query: 41  VIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
           V+  G     G    E +A   A   A  +   V +EP  H   +P  +  I   G+  V
Sbjct: 47  VVKVGDHVKVGQKIGEAKAFVSAPIHASVSGKVVAVEPRPHSSGTPVMSVVIESDGMDEV 106

Query: 101 VVCVDDP---DVRVSGRGLQWLSQKGIIVDRM 129
              V  P   D          + + GI+    
Sbjct: 107 YEGVKPPKSLDEMTPDEIKNLIREAGIVGMGG 138


>gi|2358238|gb|AAB69099.1| dCMP deaminase [Mycobacterium phage D29]
          Length = 78

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 24/52 (46%), Gaps = 7/52 (13%)

Query: 52  CPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
             HAE  AL     E+  GAT YVT EPC        C+  I   GI RVV 
Sbjct: 29  AVHAEANALLYCDREDLIGATLYVTREPCY------ACSNLIAASGIERVVY 74


>gi|53712667|ref|YP_098659.1| hypothetical protein BF1374 [Bacteroides fragilis YCH46]
 gi|189459558|ref|ZP_03008343.1| hypothetical protein BACCOP_00182 [Bacteroides coprocola DSM 17136]
 gi|255692159|ref|ZP_05415834.1| riboflavin biosynthesis protein RibD domain protein [Bacteroides
           finegoldii DSM 17565]
 gi|52215532|dbj|BAD48125.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
 gi|189433810|gb|EDV02795.1| hypothetical protein BACCOP_00182 [Bacteroides coprocola DSM 17136]
 gi|260622184|gb|EEX45055.1| riboflavin biosynthesis protein RibD domain protein [Bacteroides
           finegoldii DSM 17565]
          Length = 172

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 22/36 (61%)

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           T +LV GG  +  S I + L+DS+ +Y   ++ G+G
Sbjct: 102 TDMLVVGGGKLLTSLIKAGLLDSLTIYTVPVMAGKG 137


>gi|42522875|ref|NP_968255.1| hypothetical protein Bd1356 [Bdellovibrio bacteriovorus HD100]
 gi|39574071|emb|CAE79248.1| unnamed protein product [Bdellovibrio bacteriovorus HD100]
          Length = 193

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 10/112 (8%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P  + T  +       F   +I  +  D     K +  L   G   + V GG  +A  F 
Sbjct: 86  PCFVFTHQN----LKPFPGADIRFVQGDVASHHKEMQKLAN-GKN-IWVVGGGDLAGQFY 139

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
           +  L++ + +    + + EG     L   + +  F        G D C+E I
Sbjct: 140 DQGLLNEMHIQTVAVFLNEGKK---LFARHTDTAFKIKNIRQHG-DTCVEVI 187


>gi|255591326|ref|XP_002535488.1| conserved hypothetical protein [Ricinus communis]
 gi|223522928|gb|EEF26895.1| conserved hypothetical protein [Ricinus communis]
          Length = 215

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           GG +    ++ + LVD + L  S +++G G  
Sbjct: 153 GGVSTIRQYLQAGLVDEMHLAISPVLLGRGEA 184


>gi|255035139|ref|YP_003085760.1| bifunctional deaminase-reductase domain-containing protein
           [Dyadobacter fermentans DSM 18053]
 gi|254947895|gb|ACT92595.1| bifunctional deaminase-reductase domain protein [Dyadobacter
           fermentans DSM 18053]
          Length = 185

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           DL + +  +  R    + + GG ++  +FIN  L+D   L    +++GEG
Sbjct: 100 DLAEHVREIRQRPGKGIWLYGGGSLITTFINLDLIDVYRLAIYPVILGEG 149


>gi|262204379|ref|YP_003275587.1| bifunctional deaminase-reductase domain-containing protein
           [Gordonia bronchialis DSM 43247]
 gi|262087726|gb|ACY23694.1| bifunctional deaminase-reductase domain protein [Gordonia
           bronchialis DSM 43247]
          Length = 197

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 10/98 (10%)

Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            + ++  +  +  + L    GR +    + GG ++A +      VD I L  + ++IG  
Sbjct: 106 GVELVASNALERVRALKAEPGRDI---WLCGGGSLAGALHEE--VDEIHLKLNPVIIG-T 159

Query: 324 GIP---SPLEEGYLEKNFMCVRRDYFGSDV-CLEYIGK 357
           G+P    P   G +   F       F S V  L Y  +
Sbjct: 160 GVPLFDLPAGSGPVLDRFRLRSARTFDSGVALLIYTRR 197


>gi|229822600|ref|YP_002884126.1| bifunctional deaminase-reductase domain protein [Beutenbergia
           cavernae DSM 12333]
 gi|229568513|gb|ACQ82364.1| bifunctional deaminase-reductase domain protein [Beutenbergia
           cavernae DSM 12333]
          Length = 181

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 3/82 (3%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           D    + +L  +    ++V G   + H+ I S LVD   L+   +V G G    P  +G+
Sbjct: 100 DWIAQVRVLKEQEGRDIVVTGSITLTHALIESGLVDEYRLFVYPVVQGRGRRLFP--DGH 157

Query: 334 LEKNFMCVRRDYFGSDV-CLEY 354
                  V    F S V  L Y
Sbjct: 158 EVPRLRLVEARGFPSGVSLLRY 179


>gi|188590252|ref|YP_001921026.1| hypothetical protein CLH_1640 [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188500533|gb|ACD53669.1| hypothetical protein CLH_1640 [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 318

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 69/228 (30%), Gaps = 49/228 (21%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPI----------TGFISKNQVHLLRAQSDAILV 195
            E R +    +  S D  I  +     P+                  ++LLR   D ++V
Sbjct: 53  HEDRPYTFTSLVTSIDGRIAFSDAPQGPLISRLNKYGQGGAMADWWILNLLRTVCDGVMV 112

Query: 196 GIGTVLA---------DDPELTCRLNGLQEHSPMRIILDPHF-KLSLDSKIIKTALLA-- 243
           G GT+ A         D      R+       P  II   +   +  D ++     L   
Sbjct: 113 GAGTMNAESDFTGHIFDQELEDARIEQGMNPVPWNIITSLNGEDIPFDHRMFNEKELPLM 172

Query: 244 -----------------PVII---------VTENDDPVLALAFRKKNINIIYCDCRDLKK 277
                            P I+         VTE     +  A  K  +        D   
Sbjct: 173 ISTSKSGLKVVEERIKNPYIVIGPLSSKEDVTEEMVNTMKEAKDKVIVIATGDKAPDSTV 232

Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
              +L   G+  LLVE  + + +  +  +L+D +    S + IG   +
Sbjct: 233 AFYLLKRFGIDRLLVETPSYMHY-LVGEKLMDELFFNYSCLYIGGKAL 279


>gi|84497703|ref|ZP_00996525.1| hypothetical protein JNB_15953 [Janibacter sp. HTCC2649]
 gi|84382591|gb|EAP98473.1| hypothetical protein JNB_15953 [Janibacter sp. HTCC2649]
          Length = 204

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 9/116 (7%)

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
             P ++ + +    L       N  ++  D  +  +       R + +L   G  +V  S
Sbjct: 74  ATPKVVFSSS----LEEPLPWANSELVTTDAVEWVRAAKETADRPMHTL---GSLSVCRS 126

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV-CLEYIG 356
            I++ LVD   +     + G  G    + + Y +     V    F   +  LEY+ 
Sbjct: 127 LISAGLVDRFRVVIFPFITGATGRER-IFDDYPDLGLELVEHQTFAPGLQLLEYVP 181


>gi|297160962|gb|ADI10674.1| hypothetical protein SBI_07554 [Streptomyces bingchenggensis BCW-1]
          Length = 197

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 28/73 (38%)

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
             L G     LLV G   +  + ++  L D ++L R  +++G G    P++        +
Sbjct: 119 RELHGAEGGDLLVMGSPTLVRTLLHEGLFDELLLMRMPVILGGGKTIFPVDGALRTLELV 178

Query: 340 CVRRDYFGSDVCL 352
                  G  VC 
Sbjct: 179 STATGGTGVQVCT 191


>gi|255610979|ref|XP_002539255.1| deoxycytidylate deaminase, putative [Ricinus communis]
 gi|223507699|gb|EEF23128.1| deoxycytidylate deaminase, putative [Ricinus communis]
          Length = 279

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 6/58 (10%)

Query: 51  GCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
              HA + AL + G+  RG   +VT  PC        CA+ I+  GI+ V        
Sbjct: 119 AEMHAILTALRQKGDRVRGGKIFVTTYPCH------SCARHIVAAGIKEVYFIEPYKK 170


>gi|37521331|ref|NP_924708.1| hypothetical protein gll1762 [Gloeobacter violaceus PCC 7421]
 gi|35212328|dbj|BAC89703.1| gll1762 [Gloeobacter violaceus PCC 7421]
          Length = 182

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 31/99 (31%), Gaps = 18/99 (18%)

Query: 31  VACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGEEARG--------ATAYVTLEP 78
           V  ++   G V+      Y        H E+  L    E   G           YVTLEP
Sbjct: 41  VGAMLTWRGKVLALEHNQYAETHDVTAHGEMSILRAQAERLDGMSDEDKKDLCMYVTLEP 100

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           C        C   +   GI RVV      D  +    L+
Sbjct: 101 CLM------CLSAMSLVGIPRVVYAALSEDANIEQALLE 133


>gi|251782321|ref|YP_002996623.1| truncated dihydrofolate reductase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242390950|dbj|BAH81409.1| truncated dihydrofolate reductase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|323127217|gb|ADX24514.1| hypothetical protein SDE12394_05130 [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 173

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
            +D+   L  L      ++ + GGA + HS I + L+D  I+     ++G G    PL  
Sbjct: 93  SKDIVSTLKQLKAGEGGTIWIFGGADLVHSLIEADLIDHYIIGIIPTILGCGR---PLFT 149

Query: 332 GYLEKNFMCV 341
           G  ++  + +
Sbjct: 150 GNRQERHLRL 159


>gi|167538365|ref|XP_001750847.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163770668|gb|EDQ84351.1| predicted protein [Monosiga brevicollis MX1]
          Length = 203

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 40/118 (33%), Gaps = 21/118 (17%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60
             D   M+ A+  SR +V   +  P  A +   D  +I  GV           HAE  A 
Sbjct: 42  PDDESKMALAIDLSRRNVLHKTGGPFGAVVFGPDHRIIAVGVNRVVPQVSSLAHAENMAY 101

Query: 61  EEA---------GEEARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPD 108
             A          E+    T   + +PC   YG         I  GI R+V+     D
Sbjct: 102 MLAQQHLQTYRLNEKNAPVTLVSSAQPCCQCYG-------ATIWAGIDRLVIGARASD 152


>gi|111018802|ref|YP_701774.1| bifunctional pyrimidine deaminase/reductase [Rhodococcus jostii
           RHA1]
 gi|110818332|gb|ABG93616.1| possible bifunctional pyrimidine deaminase/reductase [Rhodococcus
           jostii RHA1]
          Length = 181

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           D    +  L G+    ++V G   + H+ I S LVD   L+   +V G G    P  +GY
Sbjct: 100 DWIARVQALKGQEGRDIVVTGSIKLTHALIESGLVDEYRLFVYPVVQGRGRRLFP--DGY 157

Query: 334 LEKNFMCVRRDYFGSDVCL 352
                  V    F + V L
Sbjct: 158 EMPRLQLVEARGFQNGVSL 176


>gi|302883030|ref|XP_003040419.1| hypothetical protein NECHADRAFT_87016 [Nectria haematococca mpVI
           77-13-4]
 gi|256721299|gb|EEU34706.1| hypothetical protein NECHADRAFT_87016 [Nectria haematococca mpVI
           77-13-4]
          Length = 263

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 67/200 (33%), Gaps = 35/200 (17%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
              +   +A S D  I      +  I    +      L  Q D  ++G  T        T
Sbjct: 1   MPQLRYNVATSLDGYIASPDGSADWIVDDPT-IDFKALYEQFDFFVMGRKTYE------T 53

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
               G    +P+                        VI+ +++  P         +I I+
Sbjct: 54  MLSFGEPNENPL-----------------SNRPKKSVIVASQSLKPEDFP-----DITIL 91

Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
             +  +  + L +  G+ +    + GG+ +A   + + LVD++      +V+G+G     
Sbjct: 92  SMNVLEFIRQLKLGTGKDI---WLMGGSKLATQCMRAGLVDTVEAAVMPVVLGDG---IK 145

Query: 329 LEEGYLEKNFMCVRRDYFGS 348
           L E       + VR D  GS
Sbjct: 146 LMEAIDSTENLPVRLDLLGS 165


>gi|255727408|ref|XP_002548630.1| cytosine deaminase [Candida tropicalis MYA-3404]
 gi|240134554|gb|EER34109.1| cytosine deaminase [Candida tropicalis MYA-3404]
          Length = 93

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 14/97 (14%)

Query: 57  VQALEEAGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           + ALE+AG       +  T Y TL PC+       C   I+  GI+RVV+  +       
Sbjct: 1   MSALEDAGRLPGKAYKDCTIYTTLSPCNM------CTGAILLYGIKRVVMGENVNFQGAE 54

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
                 L   G+ V  + +++ K  +  ++  +    
Sbjct: 55  ----DLLRANGVEVINLDDNDCKEIMSKFIKERPTDW 87


>gi|291299415|ref|YP_003510693.1| bifunctional deaminase-reductase domain-containing protein
           [Stackebrandtia nassauensis DSM 44728]
 gi|290568635|gb|ADD41600.1| bifunctional deaminase-reductase domain protein [Stackebrandtia
           nassauensis DSM 44728]
          Length = 200

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
             L       L+++G   +    +   LVD + L    + +G G   S      +++   
Sbjct: 118 RQLREAEGRGLMLQGSPGLVRELLAEGLVDELRLMIEPVTLGGG--KSIFPADGMKRPLE 175

Query: 340 CVRR 343
            V  
Sbjct: 176 LVST 179


>gi|258652158|ref|YP_003201314.1| dihydrofolate reductase family protein [Nakamurella multipartita
           DSM 44233]
 gi|258555383|gb|ACV78325.1| dihydrofolate reductase family protein [Nakamurella multipartita
           DSM 44233]
          Length = 191

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 55/170 (32%), Gaps = 42/170 (24%)

Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
           + D +++G  T+    P L   +     H  +R ++    +            +AP I +
Sbjct: 60  RFDTVVMGWNTLT---PALALGIPSPYPH--LRQVVASRHR----------RDVAPAITL 104

Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
           T+                       D    +  L       + + GG  +A +      +
Sbjct: 105 TD-----------------------DPVATVRRLKQEDGPDIWLCGGGELAGALRPD--I 139

Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL-EYIGK 357
           D +IL R  + +G  GIP      Y    F       F S V + EYI  
Sbjct: 140 DRLILKRYPVALGS-GIPLFGAARYEPHRFTLAGTRPFESGVVIEEYIRP 188


>gi|29828535|ref|NP_823169.1| hypothetical protein SAV_1993 [Streptomyces avermitilis MA-4680]
 gi|29605639|dbj|BAC69704.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 202

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           DL K +  L  R    L V G  A+A S +   L+D++ L    +V+G G       EG 
Sbjct: 112 DLAKEVAALKERTARELQVHGSGALARSLLALDLIDTVHLLTFPVVLGAGRR--LFAEGA 169

Query: 334 LEKNFMCV 341
           +   F  V
Sbjct: 170 VPTAFRHV 177


>gi|258651839|ref|YP_003200995.1| hypothetical protein Namu_1614 [Nakamurella multipartita DSM 44233]
 gi|258555064|gb|ACV78006.1| conserved hypothetical protein [Nakamurella multipartita DSM 44233]
          Length = 216

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 1/82 (1%)

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
            APV ++T +  P  ++  +              + L       G   + V GG   A +
Sbjct: 104 HAPVYVLT-HTAPRPSMPMQGGTTFHFRSPAAIEEVLAEATAAAGGLDVRVGGGVGTARA 162

Query: 302 FINSRLVDSIILYRSQIVIGEG 323
           F+ + LVD + +  + I++  G
Sbjct: 163 FLLAGLVDDLHVSIAPILLDRG 184


>gi|160890780|ref|ZP_02071783.1| hypothetical protein BACUNI_03225 [Bacteroides uniformis ATCC 8492]
 gi|294776703|ref|ZP_06742168.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
 gi|156859779|gb|EDO53210.1| hypothetical protein BACUNI_03225 [Bacteroides uniformis ATCC 8492]
 gi|294449447|gb|EFG17982.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
          Length = 163

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           GA      +++ L D I++    +++G G     LE G  +     VR      D  +  
Sbjct: 99  GAETGALLLDNGLADEIVVTTVPVLVGGGEKA--LECGLNDGRIWVVRSSKVLEDGKIRT 156

Query: 355 IGKNLC 360
           +   +C
Sbjct: 157 VYGRVC 162


>gi|54112173|gb|AAV28775.1| FCY1p [Cryptococcus gattii]
          Length = 232

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 33/117 (28%), Gaps = 29/117 (24%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGR-----GVTAYGGCPHAEVQALE 61
            +M  A   + +  G           IV      ++       GVT      H E+ A+ 
Sbjct: 39  HWMRVA-NEAVYADGHPCPQAPFGTAIVNTTSDELVCVTSNKVGVTGNP-AMHGEISAIT 96

Query: 62  EAGEEARG--------------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
              E   G               + Y   EPC      P CA  I   G + V+   
Sbjct: 97  HCTEVLTGQGWTPQEILAGWKDLSLYTNGEPC------PMCASAIRWAGFKEVIYGT 147


>gi|327188262|gb|EGE55482.1| putative riboflavin biosynthesis protein [Rhizobium etli CNPAF512]
          Length = 191

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 46/159 (28%), Gaps = 39/159 (24%)

Query: 169 CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF 228
                 +G      V  L +   A++ G      DD      +    E+ P         
Sbjct: 35  HEWFFSSGAEGDAYVQRLNSNIGAVICGRK--CYDDS-----IPYWDENGP-----TGAL 82

Query: 229 KLSL----DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
           +L L       ++ +        V    D V       ++ ++                 
Sbjct: 83  RLPLFVVTHRPLLASHSTGIYHAVGTIPDAVKQATSAARDKDV----------------- 125

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
               SL+  GGA +    +   LVD I L+   ++ G G
Sbjct: 126 ----SLM--GGADIFRQALAGGLVDEIELHIVPVLFGAG 158


>gi|54112139|gb|AAV28742.1| FCY1p [Cryptococcus gattii]
          Length = 232

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 33/117 (28%), Gaps = 29/117 (24%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGR-----GVTAYGGCPHAEVQALE 61
            +M  A   + +  G           IV      ++       GVT      H E+ A+ 
Sbjct: 39  HWMRVA-NEAVYADGHPCPQAPFGTAIVNTTSDELVCVTSNKVGVTGNP-AMHGEISAIT 96

Query: 62  EAGEEARG--------------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
              E   G               + Y   EPC      P CA  I   G + V+   
Sbjct: 97  HCTEVLTGQGWTPQEILAGWKDLSLYTNGEPC------PMCASAIRWAGFKEVIYGT 147


>gi|189206043|ref|XP_001939356.1| alcohol dehydrogenase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187975449|gb|EDU42075.1| alcohol dehydrogenase [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 350

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 8/99 (8%)

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL--VGRGVTSLLVE- 293
              A  A VI  T +      L     +  I Y D  +  +    L   G+GV  + VE 
Sbjct: 187 FAKAAGARVIATTSSSAKADILKKYGADHIINYKDTPNWGEEAAKLTPGGKGVQHV-VEV 245

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGE--GGIPSPLE 330
           GG       + +  +D +I       IG      P+ L+
Sbjct: 246 GGPTTMAQSLKAVAIDGVITIIG--FIGGMSKDQPTFLD 282


>gi|220912531|ref|YP_002487840.1| bifunctional deaminase-reductase domain protein [Arthrobacter
           chlorophenolicus A6]
 gi|219859409|gb|ACL39751.1| bifunctional deaminase-reductase domain protein [Arthrobacter
           chlorophenolicus A6]
          Length = 209

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLEYI 355
            +  S + + LVD   L    ++ G  G    + +GY +     V    F G    LEY+
Sbjct: 140 RLTRSLLAAGLVDRFRLVVFPVITGATGRER-IYDGYPDVMLEMVESKTFDGRLQLLEYV 198

Query: 356 G 356
            
Sbjct: 199 P 199


>gi|15806226|ref|NP_294931.1| cell cycle protein MesJ /cytosine deaminase-like protein
           [Deinococcus radiodurans R1]
 gi|84039866|gb|AAF10777.2|AE001969_6 cell cycle protein MesJ, putative/cytosine deaminase-related
           protein [Deinococcus radiodurans R1]
          Length = 600

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 39/103 (37%), Gaps = 16/103 (15%)

Query: 30  SVACLIVK-DGIVIGRGVT--AYGGCP--HAEVQALEEAGEE-----ARGATAYVTLEPC 79
            V  +++  DG ++GRG       G    HAE+ AL EA            T  VTLEPC
Sbjct: 443 PVGAVVLNADGEIVGRGRNTSREDGDMTCHAELAALREAAAGLGTPYLSDCTLVVTLEPC 502

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                 P C    +E  I  +V    +P     G     L+  
Sbjct: 503 ------PMCLGAALEARIGHIVYGAANPKAGALGGVSDLLADH 539


>gi|302556984|ref|ZP_07309326.1| cytidine/deoxycytidylate deaminase, zinc-binding region
          [Streptomyces griseoflavus Tu4000]
 gi|302474602|gb|EFL37695.1| cytidine/deoxycytidylate deaminase, zinc-binding region
          [Streptomyces griseoflavus Tu4000]
          Length = 161

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 11/100 (11%)

Query: 1  MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG---CPHAE 56
          M V   +  ++   +  +   +           ++V  DG V+              H E
Sbjct: 1  MAVKDAELPYLRRCVELAAEALESGDE--PFGSVLVAGDGTVLAEDHNRVASGDRTRHPE 58

Query: 57 VQ-----ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQF 91
           +     A      E   AT Y + E C     +      
Sbjct: 59 FELARWAAARMPPAERAAATVYTSGEHCPMCAAAHAWVGL 98


>gi|291297764|ref|YP_003509042.1| bifunctional deaminase-reductase domain-containing protein
           [Stackebrandtia nassauensis DSM 44728]
 gi|290566984|gb|ADD39949.1| bifunctional deaminase-reductase domain protein [Stackebrandtia
           nassauensis DSM 44728]
          Length = 184

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 12/101 (11%)

Query: 225 DPHFKLSLDSKIIKTALLA--PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282
           DP        +       A   ++  T  D PV A    ++  + +      LK      
Sbjct: 62  DPSLAEQPLGRDFAEQWQAADKIVYSTTLDKPVTAKTRIEREFDPVVVQG--LKDTAEA- 118

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
                  LL+ GG  +A     + LVD   LY   +++G G
Sbjct: 119 ------DLLI-GGPVLAAHAFAAGLVDVCELYVVPVIVGGG 152


>gi|254472059|ref|ZP_05085460.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Pseudovibrio sp. JE062]
 gi|211959261|gb|EEA94460.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Pseudovibrio sp. JE062]
          Length = 195

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 40/118 (33%), Gaps = 11/118 (9%)

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
                 ++ ++ DD       R            DL +++  L       L V G   + 
Sbjct: 86  NSAQKYVVTSQQDDLGWVNTRRVHG---------DLPEVIGALKAMDGPLLQVHGSWRLI 136

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
              +   L+D   L    +++G+G      E+G   +    ++  +    V +++  +
Sbjct: 137 QQLLEHDLIDEFRLLTFPVILGKG--KKLFEDGAQVRALKHIKSGHTAGGVKMDFYRR 192


>gi|320532622|ref|ZP_08033420.1| riboflavin biosynthesis protein RibD protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135152|gb|EFW27302.1| riboflavin biosynthesis protein RibD protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 176

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 31/65 (47%)

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
              +++ + I     +L++L+  L G     + + GGA +    I+S ++D  ++     
Sbjct: 80  HREQQDSDKIIFTSDNLEELIKKLKGVEGKDIWICGGADLVQQAISSDVIDEYLISIVPT 139

Query: 319 VIGEG 323
           ++G G
Sbjct: 140 ILGNG 144


>gi|321262599|ref|XP_003196018.1| cytosine deaminase [Cryptococcus gattii WM276]
 gi|317462493|gb|ADV24231.1| cytosine deaminase, putative [Cryptococcus gattii WM276]
          Length = 252

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 33/117 (28%), Gaps = 29/117 (24%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGR-----GVTAYGGCPHAEVQALE 61
            +M  A   + +  G           IV      ++       GVT      H E+ A+ 
Sbjct: 39  HWMRVA-NEAVYADGHPCPQAPFGTAIVNTTSDELVCVTSNKVGVTGNP-AMHGEISAIT 96

Query: 62  EAGEEARG--------------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
              E   G               + Y   EPC      P CA  I   G + V+   
Sbjct: 97  HCTEVLTGQGWTPQEILAGWKDLSLYTNGEPC------PMCASAIRWAGFKEVIYGT 147


>gi|238060405|ref|ZP_04605114.1| deaminase-reductase domain-containing protein [Micromonospora sp.
           ATCC 39149]
 gi|237882216|gb|EEP71044.1| deaminase-reductase domain-containing protein [Micromonospora sp.
           ATCC 39149]
          Length = 226

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 5/83 (6%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           D    +  L GR    + + GG  +A   +    VD +++    IV G  GIP     G+
Sbjct: 113 DPVAFVRELKGRPGGDIWLCGGGNLAGQLLPE--VDELVVKLHPIVAGS-GIP-LAARGF 168

Query: 334 LEKNFMCVRRDYFGSD-VCLEYI 355
               F       F S  V L Y+
Sbjct: 169 EAHRFALTGTRAFDSGLVLLHYV 191


>gi|54026129|ref|YP_120371.1| hypothetical protein nfa41580 [Nocardia farcinica IFM 10152]
 gi|54017637|dbj|BAD59007.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 184

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 3/61 (4%)

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYI 355
            + H  I + LVD   L+   +V+G G       EG             F S  V L Y 
Sbjct: 125 ELVHQLIAAGLVDEYRLFVYPVVLGRGAR--LFGEGARLPRLRLAESKRFRSGVVLLRYR 182

Query: 356 G 356
            
Sbjct: 183 P 183


>gi|83955334|ref|ZP_00963989.1| cytidine and deoxycytidylate deaminase family protein
           [Sulfitobacter sp. NAS-14.1]
 gi|83840327|gb|EAP79501.1| cytidine and deoxycytidylate deaminase family protein
           [Sulfitobacter sp. NAS-14.1]
          Length = 151

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 16/103 (15%)

Query: 30  SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAG-----EEARGATAYVTLEPC 79
            V  +IV  DG V+ +             HAEV A+  A      E   G   YVTLEPC
Sbjct: 24  PVGAVIVAPDGQVVAQAGNRTRELNDPTAHAEVLAIRAACAAAGSERLGGHALYVTLEPC 83

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           +    +           + R+     DP      +G +  S  
Sbjct: 84  AMCAAAI------SAARVARLYYGASDPKSGGVAQGARVFSHA 120


>gi|76798968|ref|ZP_00781169.1| ComE operon protein 2. [Streptococcus agalactiae 18RS21]
 gi|76585689|gb|EAO62246.1| ComE operon protein 2. [Streptococcus agalactiae 18RS21]
          Length = 74

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 1  MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY 49
          M   S++  FM+ A   S+     T     V  ++VK+  +I  G    
Sbjct: 1  MNRLSWEDYFMANAELISKRS---TCDRAFVGAVLVKNNRIIATGYNGG 46


>gi|66808325|ref|XP_637885.1| hypothetical protein DDB_G0286161 [Dictyostelium discoideum AX4]
 gi|60466312|gb|EAL64373.1| hypothetical protein DDB_G0286161 [Dictyostelium discoideum AX4]
          Length = 422

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 17/111 (15%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG-VTAYGGCPHAEVQALEEAGEE 66
             FM  AL  +            V+ ++  D  V+  G  +      H+E+ A+      
Sbjct: 69  EMFMKIALEIAIKSKVK-----FVSIIVSPDDRVLCSGIFSKENAILHSELVAITNCSSS 123

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
            +       T Y T EP S        +  I+    ++VV       +  +
Sbjct: 124 HKMVTFENHTIYSTAEPDS------LSSSAIVWARFKQVVYGSSIKHLYCN 168


>gi|323337097|gb|EGA78353.1| Tad2p [Saccharomyces cerevisiae Vin13]
          Length = 213

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 47/150 (31%), Gaps = 28/150 (18%)

Query: 51  GCPHAEVQALEE--AGEEARGA-------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
           G  HAE   +++  A   +RG        T YVT+EPC        CA  + + GI +VV
Sbjct: 14  GVAHAEFMGIDQIKAMLGSRGVVDVFKDITLYVTVEPCIM------CASALKQLGIGKVV 67

Query: 102 VCVDDP-----------DVRVSGRGLQWLSQKGII-VDRMMESEGKIFLHAYLTRQVEKR 149
               +            +        +  S  G   +  ++  E  + L  +  RQ E+ 
Sbjct: 68  FGCGNERFGGNGTVLSVNHDTCTLVPKNNSAAGYESIPGILRKEAIMLLRYFYVRQNERA 127

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
                K     D                 +
Sbjct: 128 PKPRSKSDRVLD-KNTFPPMEWSKYLNEEA 156


>gi|220906868|ref|YP_002482179.1| CMP/dCMP deaminase [Cyanothece sp. PCC 7425]
 gi|219863479|gb|ACL43818.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 7425]
          Length = 150

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 38/108 (35%), Gaps = 20/108 (18%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEAGEEA- 67
             L  +R  +        VA L++    ++     + V       HAE+  L +A     
Sbjct: 4   RVLELARSAIAQGKAG--VAALMLWRDEILAFDHNQAVDTGDLTAHAEMVVLRQASSRLS 61

Query: 68  -------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
                     T YVTLEPC        C   I   GI+RVV    + D
Sbjct: 62  QMSDAEKAEITLYVTLEPCLM------CLSAISFAGIKRVVYSALNRD 103


>gi|160934156|ref|ZP_02081543.1| hypothetical protein CLOLEP_03024 [Clostridium leptum DSM 753]
 gi|156866829|gb|EDO60201.1| hypothetical protein CLOLEP_03024 [Clostridium leptum DSM 753]
          Length = 316

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 73/232 (31%), Gaps = 58/232 (25%)

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI-----SKNQVHL-----LRAQSDAILV 195
            E R      +  S D  I        P+   +     +           LRA SD +++
Sbjct: 52  HEDRPCTYTSLVTSLDGRIAFTDAPQGPLIAKLNKYDPAGADTDWFILNMLRAVSDGVML 111

Query: 196 GIGT--VLADDPELTC----------RLNGLQEHSPMRII--LDPHFKLSLDSKIIKTAL 241
           G GT    AD    TC          R+   +   P  II  LD    +  D  +  T  
Sbjct: 112 GAGTMNAEAD---YTCHVFDQDMEDMRIEAGKNPVPWNIITSLDAT-DIPFDHVLFNTP- 166

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC----------------------------DCR 273
             PV+I T      L     K N  ++                                 
Sbjct: 167 EVPVMISTSKQGVELVKDKIKNNYFVVTASSMEDVTDEMIAGMKDNGDKVLVIGTGDKTP 226

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           D K  L IL   G+  LLVE  + + +  ++ +++D +    S I +G   +
Sbjct: 227 DSKVALYILKRFGIDRLLVETPSYMHY-LVSQKMMDELFFNYSCIYVGGQAL 277


>gi|269928874|ref|YP_003321195.1| bifunctional deaminase-reductase domain-containing protein
           [Sphaerobacter thermophilus DSM 20745]
 gi|269788231|gb|ACZ40373.1| bifunctional deaminase-reductase domain protein [Sphaerobacter
           thermophilus DSM 20745]
          Length = 185

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG---IPSP 328
            +L  +    +L+ G A +A + +   L+D   L  + IV+G G     PSP
Sbjct: 106 ALLKEQPGKDILLFGSANLASTLMRHGLIDEYRLGVAPIVLGGGNPLFKPSP 157


>gi|190894448|ref|YP_001984741.1| putative riboflavin biosynthesis protein [Rhizobium etli CIAT 652]
 gi|190700109|gb|ACE94191.1| putative riboflavin biosynthesis protein [Rhizobium etli CIAT 652]
          Length = 191

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 46/159 (28%), Gaps = 39/159 (24%)

Query: 169 CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF 228
                 +G      V  L +   A++ G      DD      +    E+ P         
Sbjct: 35  HEWFFSSGAEGDAYVQRLTSNIGAVICGRK--CYDDS-----IPYWDENGP-----TGAL 82

Query: 229 KLSL----DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
           +L L       ++ +        V    D V       ++ ++                 
Sbjct: 83  RLPLFVVTHRPLLASHSTGIYHAVGTIPDAVKQATSAARDKDV----------------- 125

Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
               SL+  GGA +    +   LVD I L+   ++ G G
Sbjct: 126 ----SLM--GGADIFRQALAGGLVDEIELHIVPVLFGAG 158


>gi|84495552|ref|ZP_00994671.1| hypothetical protein JNB_12139 [Janibacter sp. HTCC2649]
 gi|84385045|gb|EAQ00925.1| hypothetical protein JNB_12139 [Janibacter sp. HTCC2649]
          Length = 197

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 18/29 (62%)

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           G  V  + + + LVD ++L++  +++G G
Sbjct: 136 GGGVVTTALAAGLVDELVLHQVPVLLGAG 164


>gi|194705936|gb|ACF87052.1| unknown [Zea mays]
          Length = 138

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 20/83 (24%)

Query: 54  HAEVQALE--------------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
           HAE++A++              +  E+  G   YVT EPC        CA  +   GIR 
Sbjct: 6   HAEMEAIDVLLREWQSMGLDQPQVAEKFAGCDLYVTCEPCIM------CATALSIIGIRE 59

Query: 100 VVVCVDDPDVRVSGRGLQWLSQK 122
           V     +      G  +   +  
Sbjct: 60  VYFGCANDKFGGCGSIMSLHNGA 82


>gi|159897985|ref|YP_001544232.1| deaminase-reductase domain-containing protein [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891024|gb|ABX04104.1| bifunctional deaminase-reductase domain protein [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 193

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
             D   L+  L      ++ + GG ++A + I    +D +IL  + +++G+G
Sbjct: 107 ANDPVDLVRRLKQEPGQNIWLCGGGSLASALIGE--IDQLILKVNPVILGQG 156


>gi|302388259|ref|YP_003824081.1| dihydrofolate reductase [Clostridium saccharolyticum WM1]
 gi|302198887|gb|ADL06458.1| dihydrofolate reductase [Clostridium saccharolyticum WM1]
          Length = 172

 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
           + + GG  +    +++ ++D++I+  + +++G  GIP   ++  L K F       +G 
Sbjct: 105 IWIVGGNTIIAPLLDNDMIDNMIIQIAPVLLG-IGIPLFSQKEAL-KRFHLKEVKKYGQ 161


>gi|61216750|sp|Q9RV23|TILS_DEIRA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
          Length = 582

 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 39/103 (37%), Gaps = 16/103 (15%)

Query: 30  SVACLIVK-DGIVIGRGVT--AYGGCP--HAEVQALEEAGEE-----ARGATAYVTLEPC 79
            V  +++  DG ++GRG       G    HAE+ AL EA            T  VTLEPC
Sbjct: 425 PVGAVVLNADGEIVGRGRNTSREDGDMTCHAELAALREAAAGLGTPYLSDCTLVVTLEPC 484

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                 P C    +E  I  +V    +P     G     L+  
Sbjct: 485 ------PMCLGAALEARIGHIVYGAANPKAGALGGVSDLLADH 521


>gi|270208632|ref|YP_003329403.1| probable dihydrofolate reductase FolA [Sinorhizobium meliloti]
 gi|76880906|gb|ABA56076.1| probable dihydrofolate reductase FolA [Sinorhizobium meliloti]
          Length = 143

 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 27/75 (36%)

Query: 254 PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
                 +   +  +I    R L      L  R    + + GG  +  +F+    +D I +
Sbjct: 60  AKEQSPWAYGDQRVIVVTSRPLDDPKGTLEVRSDVDVWMLGGGRLQMAFMERGALDEIEI 119

Query: 314 YRSQIVIGEGGIPSP 328
           Y    +IG G   SP
Sbjct: 120 YLIPEIIGSGQPYSP 134


>gi|325922349|ref|ZP_08184124.1| Putative deaminase [Xanthomonas gardneri ATCC 19865]
 gi|325547168|gb|EGD18247.1| Putative deaminase [Xanthomonas gardneri ATCC 19865]
          Length = 208

 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 5/41 (12%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPL 329
           GGAA A S I   LVD  +L    I++G G      +P+P+
Sbjct: 146 GGAAFARSLIAHNLVDEYVLGIYPILLGRGAPIFCDLPAPM 186


>gi|313203114|ref|YP_004041771.1| bifunctional deaminase-reductase domain protein [Paludibacter
           propionicigenes WB4]
 gi|312442430|gb|ADQ78786.1| bifunctional deaminase-reductase domain protein [Paludibacter
           propionicigenes WB4]
          Length = 188

 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 43/98 (43%), Gaps = 4/98 (4%)

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
           VL+   ++  ++       ++ + +  +  +   ++++ G  + ++S +   +VD   ++
Sbjct: 87  VLSRTIKETGLHNTRVFGENIAENINRIKQQDGKNIIIFGSPSASNSLLKMGVVDEFWIF 146

Query: 315 RSQIVIGEGGIPSPLEEGYLEK-NFMCVRRDYFGSDVC 351
            + +++G+G    PL +   E      V    F + V 
Sbjct: 147 VNPVLLGQG---VPLFKDITETVLLTLVETRTFDNGVI 181


>gi|291299778|ref|YP_003511056.1| bifunctional deaminase-reductase domain-containing protein
           [Stackebrandtia nassauensis DSM 44728]
 gi|290568998|gb|ADD41963.1| bifunctional deaminase-reductase domain protein [Stackebrandtia
           nassauensis DSM 44728]
          Length = 192

 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 7/54 (12%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
           ++  + + + LVD + +    ++ G+ G  +P+ +G  + +   +        +
Sbjct: 129 SLNRALLGAGLVDRVQVTLFPVITGQTGA-NPIFKGAADFDLELIDSRTLDGHI 181


>gi|326519634|dbj|BAK00190.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 154

 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 39/132 (29%), Gaps = 36/132 (27%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVAC--------------LIVKDGIVIGRGVTAYG 50
             + +F+S A+  +   V      P                  ++VK+            
Sbjct: 9   DREHKFLSIAVEEAYRAVDRGHGRP-FGAVVVRNDKVVVSCHNMVVKN----------TD 57

Query: 51  GCPHAEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
              HAEV A+ EA       +      Y + EPC      P C   +    I+R+V    
Sbjct: 58  ATAHAEVTAIREACKKLGKTDLSDCEMYASCEPC------PMCFGAVRLSRIKRLVYGAT 111

Query: 106 DPDVRVSGRGLQ 117
                  G   Q
Sbjct: 112 AEAAIAMGSCYQ 123


>gi|288917447|ref|ZP_06411813.1| bifunctional deaminase-reductase domain protein [Frankia sp. EUN1f]
 gi|288351150|gb|EFC85361.1| bifunctional deaminase-reductase domain protein [Frankia sp. EUN1f]
          Length = 188

 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           G A +    + + LVD + L    +V+G G      E G          +  FG+ V  +
Sbjct: 117 GSATLTRHLLQAGLVDELRLLVHPLVVGRG--KHLFETGSAPVGLALESQRTFGNGVTYQ 174

Query: 354 YIGK 357
               
Sbjct: 175 VYRP 178


>gi|256390926|ref|YP_003112490.1| bifunctional deaminase-reductase domain-containing protein
           [Catenulispora acidiphila DSM 44928]
 gi|256357152|gb|ACU70649.1| bifunctional deaminase-reductase domain protein [Catenulispora
           acidiphila DSM 44928]
          Length = 192

 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
           A+  + + + LVD + +    ++ G  G  +P+ +G  + +   +    F 
Sbjct: 129 AMNRALMAAGLVDRVQVTIFPVLTGRTGA-APIFQGAEDFDLELIESRTFD 178


>gi|262276797|ref|ZP_06054590.1| tRNA-specific adenosine deaminase [alpha proteobacterium HIMB114]
 gi|262223900|gb|EEY74359.1| tRNA-specific adenosine deaminase [alpha proteobacterium HIMB114]
          Length = 158

 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 15/81 (18%)

Query: 37  KDGIVIGRGVTA----YGGCPHAEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPP 87
           K+  ++ +        Y  C HAE+ ++ +A          G   Y +LEPC        
Sbjct: 41  KNNRIVSKSHNQNIQDYNPCSHAEIISIIKACNKLNKNRLDGMDLYCSLEPCLM------ 94

Query: 88  CAQFIIECGIRRVVVCVDDPD 108
           C+  I +  IRRV    DD  
Sbjct: 95  CSSVIFQSKIRRVYFATDDKK 115


>gi|239942547|ref|ZP_04694484.1| hypothetical protein SrosN15_16261 [Streptomyces roseosporus NRRL
           15998]
 gi|239989010|ref|ZP_04709674.1| hypothetical protein SrosN1_17010 [Streptomyces roseosporus NRRL
           11379]
 gi|291446007|ref|ZP_06585397.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998]
 gi|291348954|gb|EFE75858.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998]
          Length = 214

 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 17/30 (56%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GG      F+++ LVD++ +  + + +G G
Sbjct: 152 GGVTTIREFLDAGLVDTLHVAVAPVKLGTG 181


>gi|257865357|ref|ZP_05645010.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257871687|ref|ZP_05651340.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257799291|gb|EEV28343.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257805851|gb|EEV34673.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
          Length = 896

 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/84 (13%), Positives = 35/84 (41%), Gaps = 10/84 (11%)

Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI--------VIGE 322
           D   ++  ++ +   G+ S+ +E        F+ ++  D + +   +         ++ +
Sbjct: 37  DKETIQTYISRIYEAGIRSVCIESRP--HEEFLKAQWWDELAIIIEECEKRQMTLWILDD 94

Query: 323 GGIPSPLEEGYLEKNFMCVRRDYF 346
              P+    G +EKN   +++++ 
Sbjct: 95  KHFPTGYAAGEIEKNHRHLQKEFL 118


>gi|291302900|ref|YP_003514178.1| bifunctional deaminase-reductase domain-containing protein
           [Stackebrandtia nassauensis DSM 44728]
 gi|290572120|gb|ADD45085.1| bifunctional deaminase-reductase domain protein [Stackebrandtia
           nassauensis DSM 44728]
          Length = 210

 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                +PVI++T    P + +        +       +++  T   G+ V    + GGA 
Sbjct: 94  NPPFHSPVIVLTHRPRPAIEMEGGTTFHFLDATPAEAIEQAKTAADGKDVR---IGGGAT 150

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323
           V    + + LVD + L +  IV+G G
Sbjct: 151 VIRDCVAAGLVDHMHLVQVPIVLGRG 176


>gi|85712605|ref|ZP_01043652.1| probable Cytidine deaminase [Idiomarina baltica OS145]
 gi|85693596|gb|EAQ31547.1| probable Cytidine deaminase [Idiomarina baltica OS145]
          Length = 545

 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 9/60 (15%)

Query: 52  CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
             HAE+ AL +A   G   + +T YV   PC    R       II  G++R+V     P 
Sbjct: 393 TVHAEMAALTDAVSKGASVKNSTMYVNTFPCHICARH------IISSGVKRLVFIEPYPK 446


>gi|226363519|ref|YP_002781301.1| hypothetical protein ROP_41090 [Rhodococcus opacus B4]
 gi|226242008|dbj|BAH52356.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 192

 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 7/86 (8%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG- 332
           D  + +  L       + + GG  +A +      VD + +  + + IG G    PL +G 
Sbjct: 112 DPIEKVRELEKEDGKDIWLCGGGKLAAALQPE--VDELRIKLNPVAIGTG---IPLFDGE 166

Query: 333 YLEKNFMCVRRDYFGSD-VCLEYIGK 357
           +  + F       F S  + L Y+ +
Sbjct: 167 FDPQRFRLTSTRAFESGMIFLTYVRR 192


>gi|318077697|ref|ZP_07985029.1| hypothetical protein SSA3_13503 [Streptomyces sp. SA3_actF]
          Length = 71

 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 17/67 (25%), Gaps = 2/67 (2%)

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD--V 350
           EGG  +    I +  VD + L  S  +              L              D  +
Sbjct: 2   EGGPQLLGRLIAADTVDELCLTVSPFLTAGDASRIAHAPQALTTPARLRPASILAEDGFL 61

Query: 351 CLEYIGK 357
              Y+  
Sbjct: 62  FTRYVRD 68


>gi|331004400|ref|ZP_08327873.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330411130|gb|EGG90549.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 176

 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 31/65 (47%)

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
              +++ + I     +L++L+  L G     + + GGA +    I+S ++D  ++     
Sbjct: 80  HREQQDSDKIIFTSDNLEELIKKLKGVEGKDIWICGGADLVQQAISSDVIDEYLISIIPT 139

Query: 319 VIGEG 323
           ++G G
Sbjct: 140 ILGNG 144


>gi|329943948|ref|ZP_08292217.1| riboflavin biosynthesis protein RibD protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328531381|gb|EGF58223.1| riboflavin biosynthesis protein RibD protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 176

 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 31/65 (47%)

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
              +++ + I     +L++L+  L G     + + GGA +    I+S ++D  ++     
Sbjct: 80  HREQQDSDKIIFTSDNLEELIKKLKGVEGKDIWICGGADLVQQAISSDVIDEYLISIIPT 139

Query: 319 VIGEG 323
           ++G G
Sbjct: 140 ILGNG 144


>gi|307543864|ref|YP_003896343.1| hypothetical protein HELO_1275 [Halomonas elongata DSM 2581]
 gi|307215888|emb|CBV41158.1| hypothetical protein HELO_1275 [Halomonas elongata DSM 2581]
          Length = 157

 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 24/96 (25%), Gaps = 11/96 (11%)

Query: 5  SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG---CPHAEVQAL 60
            D   +   +  +   +           ++V  DG V+        G     H E    
Sbjct: 4  DTDMAHLRRCVALAAEALEHGDE--PFGSVLVGADGKVLAEDRNRIAGGDSTRHPEFALA 61

Query: 61 EEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQF 91
            A E         AT Y + E C     +      
Sbjct: 62 RWAAENLPAESRAAATVYTSGEHCPMCAAAHAWVGL 97


>gi|297191042|ref|ZP_06908440.1| cytidine/deoxycytidine deaminase [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197721517|gb|EDY65425.1| cytidine/deoxycytidine deaminase [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 158

 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 39/111 (35%), Gaps = 18/111 (16%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----CPHAE- 56
           +S  DA F+  A+  +   V  T  +     L+V  DG  +               H E 
Sbjct: 17  ISPADAAFLRRAVAIAAHAV--TLGDAPYGSLLVGPDGATLAEAHNTVQRDNDISAHPEL 74

Query: 57  ---VQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                A  E   + A G T Y + +PC        C   I+  G+ RVV  
Sbjct: 75  KLARWAARELDKDTASGTTLYTSCQPCGM------CTGGIVRSGLGRVVYA 119


>gi|220910469|ref|YP_002485780.1| transketolase central region [Cyanothece sp. PCC 7425]
 gi|219867080|gb|ACL47419.1| Transketolase central region [Cyanothece sp. PCC 7425]
          Length = 327

 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 63/312 (20%), Positives = 106/312 (33%), Gaps = 52/312 (16%)

Query: 55  AEV---QALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AEV    AL  A +E  AR AT  V  E   HYG S    + + E      V+     D 
Sbjct: 2   AEVLLFNALRAAIDEEMARDATVLVMGEDVGHYGGSYKVTRGLHEKYGELRVL-----DT 56

Query: 110 RVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC 169
            ++      ++    +       EG       L       +   L+     +  I +   
Sbjct: 57  PIAENSFTGMAIGAAMTGLRPIIEGMNMGFLLLAFNQIANNAGMLRYTSGGNFQIPVVIR 116

Query: 170 GSVPITGFISKNQVHLLRAQSDAI----LVGIGT----------VLAD-DPEL---TCRL 211
           G   +   +       L A   A+    +V   T           + D +P L      L
Sbjct: 117 GPGGVGRQLGAEHSQRLEAYFQAVPGLKIVACSTPYNAKGLMKAAIRDPNPVLFFEHVLL 176

Query: 212 NGLQEHSPMRIILDPHFKLSLD-SKIIKTALLAPVIIVTENDDPVLA--LAFRKKNINII 268
             L+E  P     D  + L LD ++++++     +I  +     VL       K   +  
Sbjct: 177 YNLKEDLP-----DEEYLLPLDKAEVVRSGKDVTIITYSRMRHHVLQAVKTLEKSGYDPE 231

Query: 269 YCDCRDLKKLLTILVGRGVTS----LLVE-----GG--AAVAHSFINSRLVDSIILYRSQ 317
             D   LK L    +G+ +      ++VE     GG  A +  S IN +  D +    + 
Sbjct: 232 VIDLISLKPLDFATIGQSIRKTHRVIIVEECMKTGGIAAELIAS-INDQFFDELD---AP 287

Query: 318 IV-IGEGGIPSP 328
           ++ +    IP+P
Sbjct: 288 VLRLSSQDIPTP 299


>gi|23928436|gb|AAN40022.1| putative cytidine deaminase [Zea mays]
          Length = 180

 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 43/151 (28%), Gaps = 39/151 (25%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVAC--------------LIVKDGIVIGRGVTA 48
           V   D +F++ A+  +   V      P                  +++K    I      
Sbjct: 21  VQDRDHKFLTKAVEEAYRGVDCGDEGP-FGAVVVRNDEVVVSCHNMVLKHTDPIA----- 74

Query: 49  YGGCPHAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                HAEV A+ EA ++           Y + EPC      P C   +    I+R+V  
Sbjct: 75  -----HAEVTAIREACKKLGKIELSDCEIYASCEPC------PMCFGALHLSRIKRLVYG 123

Query: 104 VDDPDV---RVSGRGLQWLSQKGIIVDRMME 131
                             L   G      ME
Sbjct: 124 AKAEAAIAIGFDDFIADALRGTGFYQKANME 154


>gi|326331654|ref|ZP_08197942.1| hypothetical protein NBCG_03093 [Nocardioidaceae bacterium Broad-1]
 gi|325950453|gb|EGD42505.1| hypothetical protein NBCG_03093 [Nocardioidaceae bacterium Broad-1]
          Length = 195

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
           GA VA + + +  +D I ++   +++G G    P ++G        VRR
Sbjct: 132 GAGVAQALLAAGQLDEIEIHLVPVLLGAGRRLFP-DDGVGPVELELVRR 179


>gi|254438319|ref|ZP_05051813.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Octadecabacter antarcticus 307]
 gi|198253765|gb|EDY78079.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
           protein [Octadecabacter antarcticus 307]
          Length = 509

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 9/70 (12%)

Query: 47  TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           T YG   HAE+ ++ +A   G   +GAT +VT  PC +      CA+ II  GI R+V  
Sbjct: 367 TEYGRMVHAEMNSISDAARLGRRIQGATMHVTTFPCHN------CAKHIIAAGISRLVFI 420

Query: 104 VDDPDVRVSG 113
              P  +   
Sbjct: 421 EPYPKSKTRQ 430


>gi|330903778|gb|EGH34350.1| cytosine deaminase [Pseudomonas syringae pv. japonica str.
          M301072PT]
          Length = 40

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA 48
          FM AA   ++  +GL      +  +IV  G +IGRG   
Sbjct: 4  FMQAAFDEAQ--LGLKEGGIPIGSVIVHGGKIIGRGHNR 40


>gi|296123948|ref|YP_003631726.1| bifunctional deaminase-reductase domain protein [Planctomyces
           limnophilus DSM 3776]
 gi|296016288|gb|ADG69527.1| bifunctional deaminase-reductase domain protein [Planctomyces
           limnophilus DSM 3776]
          Length = 178

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
             +++  L         V+GG+    SF+ + LV  + +    I++G G
Sbjct: 98  PAEIVKSLERESFRRAYVDGGST-IQSFLAAGLVSDLTITSIPILLGSG 145


>gi|114049382|ref|YP_739932.1| YD repeat-containing protein [Shewanella sp. MR-7]
 gi|113890824|gb|ABI44875.1| YD repeat protein [Shewanella sp. MR-7]
          Length = 2283

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 54   HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
            HAE Q L++   + R  T  V   PC        C+  + +  + +VVV ++    +   
Sbjct: 2192 HAEEQTLKDLRGKPRPWTVAVDQNPCD------SCSDKLSQANVEKVVVPMNPDKPQNKP 2245

Query: 114  RGLQWLSQKG 123
            +G+   +  G
Sbjct: 2246 KGVAMKAAAG 2255


>gi|298244087|ref|ZP_06967893.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
           racemifer DSM 44963]
 gi|297551568|gb|EFH85433.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
           racemifer DSM 44963]
          Length = 201

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
              + APV++VT    P                +   +++   I   + V S+     A 
Sbjct: 87  HHPITAPVVVVTHRPAPEWVEEEWPVTFVTDGLESA-IEQAKVIAGEKNV-SI---ASAT 141

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323
           +A   +N+ L+D I +     ++G+G
Sbjct: 142 IAQQCLNAGLLDEIHIDLVPFLLGDG 167


>gi|34498750|ref|NP_902965.1| hypothetical protein CV_3295 [Chromobacterium violaceum ATCC 12472]
 gi|34104601|gb|AAQ60959.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 219

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 16/32 (50%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           GG      ++ + LVD + L  + +++G G  
Sbjct: 153 GGVDTVRQYLRAGLVDELHLAIAPVLLGAGEA 184


>gi|24216237|ref|NP_713718.1| hypothetical protein LA_3538 [Leptospira interrogans serovar Lai
           str. 56601]
 gi|24197497|gb|AAN50736.1| hypothetical protein LA_3538 [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 182

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS-DVCL 352
           G +++  + I  +L+D + ++ + +V+GEG   +  +      +   ++   F S +V L
Sbjct: 120 GSSSLVATLIEQKLIDEVRIFINPVVLGEG--KTLFQGIQNRISLKLIQTKTFQSGNVLL 177

Query: 353 EY 354
            Y
Sbjct: 178 YY 179


>gi|313890945|ref|ZP_07824567.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120669|gb|EFR43786.1| riboflavin biosynthesis protein RibD C-terminal domain protein
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 189

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            +L K +  L  R    +LV G   +A   +  ++VD + L  S  ++G G
Sbjct: 107 NNLTKSIEELKIRDGQDILVLGSPRLARFLLAEKIVDKVTLTLSPTLVGNG 157


>gi|295397471|ref|ZP_06807554.1| dihydrofolate reductase family protein [Aerococcus viridans ATCC
           11563]
 gi|294974271|gb|EFG50015.1| dihydrofolate reductase family protein [Aerococcus viridans ATCC
           11563]
          Length = 177

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 8/87 (9%)

Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
             T   +  I V  N+        R    NI +     + KL+     +G   + + GG 
Sbjct: 67  FATDFPSKTIYVVTNE-------KRPNEGNIHFVKPGQIVKLMLAKKKQG-HHIYLYGGG 118

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +   F+ +  +D  I+    I++G+G
Sbjct: 119 IMLKPFMAANAIDEYIIGTVPIIMGKG 145


>gi|284034352|ref|YP_003384283.1| bifunctional deaminase-reductase domain-containing protein
           [Kribbella flavida DSM 17836]
 gi|283813645|gb|ADB35484.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
           DSM 17836]
          Length = 194

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 3/62 (4%)

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV-CLEYI 355
            +  + +   LVD + L    +V+G G      ++         +R    G ++  L Y 
Sbjct: 130 QLGRTLLEHNLVDELRLMLFPVVLGSGRR--LFDDTSATTPLRLLRHRTIGDNLTLLTYR 187

Query: 356 GK 357
            +
Sbjct: 188 PE 189


>gi|298249661|ref|ZP_06973465.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
           racemifer DSM 44963]
 gi|297547665|gb|EFH81532.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
           racemifer DSM 44963]
          Length = 200

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           D+ + +  L  +    L V G +    + ++  LVD + LY   I +G G       EG 
Sbjct: 112 DVVQAIQQLKQQDGPVLQVSGSSHFLQTLLSHDLVDELYLYICPITLGIG--KRVFGEGT 169

Query: 334 LEKNFMC 340
           +   F  
Sbjct: 170 IPAAFSL 176


>gi|146157359|gb|ABQ08114.1| hypothetical protein [Tropheryma whipplei]
          Length = 60

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 6/55 (10%)

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
              G T +VT+EPC        CA  I+   I RVV  V +      G  +  L 
Sbjct: 12  RLSGLTLFVTMEPC------TMCAGAIVTSRISRVVFGVFNNKTGSVGSRIDILR 60


>gi|16263176|ref|NP_435969.1| hypothetical protein SMa1326 [Sinorhizobium meliloti 1021]
 gi|307305101|ref|ZP_07584850.1| bifunctional deaminase-reductase domain protein [Sinorhizobium
           meliloti BL225C]
 gi|307318219|ref|ZP_07597655.1| bifunctional deaminase-reductase domain protein [Sinorhizobium
           meliloti AK83]
 gi|14523842|gb|AAK65381.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306896260|gb|EFN27010.1| bifunctional deaminase-reductase domain protein [Sinorhizobium
           meliloti AK83]
 gi|306902441|gb|EFN33036.1| bifunctional deaminase-reductase domain protein [Sinorhizobium
           meliloti BL225C]
          Length = 215

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           GG+A    ++N+RLVD + +  S I++G G  
Sbjct: 152 GGSATVRQYLNARLVDEMHIAISPILLGSGEA 183


>gi|326779485|ref|ZP_08238750.1| bifunctional deaminase-reductase domain protein [Streptomyces cf.
           griseus XylebKG-1]
 gi|326659818|gb|EGE44664.1| bifunctional deaminase-reductase domain protein [Streptomyces cf.
           griseus XylebKG-1]
          Length = 192

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 6/28 (21%), Positives = 16/28 (57%)

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG 323
           A +A   +   L+D + ++ + + +G+G
Sbjct: 124 ADIARQALEHDLIDELQVFVAPVFLGDG 151


>gi|256421464|ref|YP_003122117.1| bifunctional deaminase-reductase domain protein [Chitinophaga
           pinensis DSM 2588]
 gi|256036372|gb|ACU59916.1| bifunctional deaminase-reductase domain protein [Chitinophaga
           pinensis DSM 2588]
          Length = 188

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           G +++  SFI   L+D   ++   + I + G+P    +   +     +R   F S V + 
Sbjct: 124 GSSSIVQSFIRQGLIDEFQIWVHPVFI-QHGVPM-FRDMEEKVRLEFMRTRSFSSGVVIL 181

Query: 354 YI 355
           Y 
Sbjct: 182 YY 183


>gi|83944514|ref|ZP_00956966.1| cytidine and deoxycytidylate deaminase family protein
          [Sulfitobacter sp. EE-36]
 gi|83844620|gb|EAP82505.1| cytidine and deoxycytidylate deaminase family protein
          [Sulfitobacter sp. EE-36]
          Length = 151

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 10/60 (16%)

Query: 30 SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAG-----EEARGATAYVTLEPC 79
           V  +IV  DG V+ +             HAEV A+  A      E   G   YVTLEPC
Sbjct: 24 PVGAVIVAPDGQVVAQAGNRTRELNDPTAHAEVLAIRAACAAAGSERLGGHALYVTLEPC 83


>gi|239927966|ref|ZP_04684919.1| hypothetical protein SghaA1_07066 [Streptomyces ghanaensis ATCC
           14672]
 gi|291436298|ref|ZP_06575688.1| bifunctional deaminase-reductase domain-containing protein
           [Streptomyces ghanaensis ATCC 14672]
 gi|291339193|gb|EFE66149.1| bifunctional deaminase-reductase domain-containing protein
           [Streptomyces ghanaensis ATCC 14672]
          Length = 208

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           DL K +T L  R    L V G A +A S     LVD++ L    +V+G G    P  EG 
Sbjct: 112 DLAKEVTDLKERTDGELQVHGSATLAQSLFALGLVDTLHLLTFPVVLGAGRRLFP--EGS 169

Query: 334 LEKNFM 339
               F 
Sbjct: 170 APTAFR 175


>gi|284028862|ref|YP_003378793.1| bifunctional deaminase-reductase domain-containing protein
           [Kribbella flavida DSM 17836]
 gi|283808155|gb|ADB29994.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
           DSM 17836]
          Length = 189

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 39/118 (33%), Gaps = 11/118 (9%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P I+ +    P L  A        I      LK+L   L  R + S      A++  S  
Sbjct: 76  PKIVFSSTLRPPLTWANTTIVDEPIETAVPALKQLDDGLPMRTIGS------ASLIRSLF 129

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD--VCLEY-IGKN 358
              LVD + +     + G  G   P+     +             D  V L+Y +G +
Sbjct: 130 RQGLVDRLRVMVFPTIHGTAG-EGPVFADLPDLRLSLAGTTVL-DDRLVLLDYRVGDD 185


>gi|226362571|ref|YP_002780349.1| hypothetical protein ROP_31570 [Rhodococcus opacus B4]
 gi|226241056|dbj|BAH51404.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 206

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 28/76 (36%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             DL   +  L       L V G   +    + + L+D +      +V+G+G    P   
Sbjct: 114 SDDLAAAIADLKAEPGGELQVHGSGTLTRWLLENDLIDEMTHIVVPVVLGQGARLFPEAG 173

Query: 332 GYLEKNFMCVRRDYFG 347
             L+ + +  R D  G
Sbjct: 174 PDLQLDLIESRVDSKG 189


>gi|159898606|ref|YP_001544853.1| deaminase-reductase domain-containing protein [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891645|gb|ABX04725.1| bifunctional deaminase-reductase domain protein [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 242

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 54/166 (32%), Gaps = 30/166 (18%)

Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-----LSLDSKIIKT 239
            LRA    IL G  + L +    T   N        R + D + +     +S   ++   
Sbjct: 77  RLRAADTLILSGRTSFLGNKQYWTSVPNDPNATPIRRELADLYHRTDKLVISDTIRLPDL 136

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           A      IV+  D P      +++         RD+  L+               G  + 
Sbjct: 137 APWKNTRIVSIADAPNEIRTLKEQ-------PGRDMLILM---------------GRVLW 174

Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
           ++ +  RL+D + L    I+ G+G    PL  G        +    
Sbjct: 175 NALLVHRLIDELHLTTFPIIAGDG---IPLFNGRPPIALKLIHSRQ 217


>gi|327354664|gb|EGE83521.1| DRAP deaminase [Ajellomyces dermatitidis ATCC 18188]
          Length = 299

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 61/215 (28%), Gaps = 91/215 (42%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK----------------DGIVIGRGVT-AYGG 51
            ++ A L  ++       TN  V  +++                    ++  G T    G
Sbjct: 26  HYLRACLSLAQKSPPK-PTNFRVGAILLSRTLHASATTETTTQTYADTILSTGYTLELPG 84

Query: 52  CPHAEVQALEE-------------------AGEEARGA--------------------TA 72
             HAE  ALE+                      +AR A                      
Sbjct: 85  NTHAEQCALEKYAASHGVTDERIGDILPPPLSPDARSAGTGTGTGTDKDQERNHEQKIVL 144

Query: 73  YVTLEPCSHY--GRSPPCAQFII-------------------------------ECGIRR 99
           YVT+EPC     G +P  A+ I                                + GI +
Sbjct: 145 YVTMEPCGKRLSGNTPCAARIIQTSRSSSSSEIENKTSHGLDASNGPGSNATRRKSGIDK 204

Query: 100 VVVCVDDPDVRVSGRG-LQWLSQKGIIVDRMMESE 133
           V   V +P++ V G    + L + G+  + +   E
Sbjct: 205 VYFGVKEPEIFVGGSVGCRMLDEAGVEWEVVEGME 239


>gi|184201786|ref|YP_001855993.1| guanine deaminase [Kocuria rhizophila DC2201]
 gi|183582016|dbj|BAG30487.1| guanine deaminase [Kocuria rhizophila DC2201]
          Length = 170

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 30/90 (33%), Gaps = 21/90 (23%)

Query: 30  SVACLIVKDGIVIGRGVTAYG-------GCPHAEVQALEEA-----GEEARGATAYVTLE 77
               L+V      GR  TA            HAEV A+  A       +  GAT Y + E
Sbjct: 37  PFGALLVTAD---GREFTAVNRVTADNDPTAHAEVCAIRAACSALGTHDLGGATLYSSCE 93

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
           PC      P C    +   + RV    D  
Sbjct: 94  PC------PMCLSAALWARLDRVFFAADRH 117


>gi|297154979|gb|ADI04691.1| hypothetical protein SBI_01570 [Streptomyces bingchenggensis BCW-1]
          Length = 214

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GG      F+++ LVD++ +  S + +G G
Sbjct: 152 GGVTTIRQFLDADLVDTLHVVVSPVRLGSG 181


>gi|269856949|gb|ACZ51498.1| FCY1p [Cryptococcus heveanensis]
          Length = 231

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 36/128 (28%), Gaps = 29/128 (22%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGR-----GVTAYGGCPHAEVQALE 61
            +M  A   + +  G           IV      +I       GVT      H E+ A+ 
Sbjct: 42  HWMRVA-NEAVYADGHPCPQAPFGSAIVNTTSDELICVTSNKVGVTGNP-AMHGEISAIT 99

Query: 62  EAGEEA--------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
              +                +  + Y   EPC      P CA  I   G + V+      
Sbjct: 100 HCTDVLTKKGLSPQEILASWKDFSLYTNGEPC------PMCASAIRWAGFKEVIYGTSIR 153

Query: 108 DVRVSGRG 115
            +   GR 
Sbjct: 154 KIAEHGRN 161


>gi|302542418|ref|ZP_07294760.1| riboflavin biosynthesis, RibD domain-containing protein
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302460036|gb|EFL23129.1| riboflavin biosynthesis, RibD domain-containing protein
           [Streptomyces himastatinicus ATCC 53653]
          Length = 195

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           D   L+  L       + + GG  +A + +    +D +I+    +V G  GIP+     +
Sbjct: 115 DPLALVRDLKREEGQDIWLCGGGRLAGTLLPE--IDRLIVKSYPVVAGA-GIPAFH-GAF 170

Query: 334 LEKNFMCVRRDYFGSDVCLEY 354
               F    R+ F + V + +
Sbjct: 171 NPTVFRVTDRELFDNGVTVTW 191


>gi|281212623|gb|EFA86783.1| hypothetical protein PPL_00588 [Polysphondylium pallidum PN500]
          Length = 217

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 36/121 (29%), Gaps = 24/121 (19%)

Query: 8   ARFMSAALRFS--RWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--HAEVQALEE 62
            ++M  A   +  + ++  T        +IV  +G V   G+         H E+ A+  
Sbjct: 47  EKYMQIAYDLAIEKNNLFTT--------VIVAPNGTVACTGLNQNENSAIYHGEMVAIMN 98

Query: 63  A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
                      G + Y T E C        C    +  G  +V+       +       Q
Sbjct: 99  CSRIHNKNTWEGYSLYTTGESC------VMCHAAAMWAGFSKVIYGTSIQTMYCDKCLGQ 152

Query: 118 W 118
            
Sbjct: 153 I 153


>gi|284030963|ref|YP_003380894.1| bifunctional deaminase-reductase domain-containing protein
           [Kribbella flavida DSM 17836]
 gi|283810256|gb|ADB32095.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
           DSM 17836]
          Length = 201

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 18/29 (62%)

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           G  V  S + + L+D ++L++  +++G G
Sbjct: 140 GGGVVTSALAAGLLDEVVLHQVPVLLGGG 168


>gi|229819040|ref|YP_002880566.1| bifunctional deaminase-reductase domain protein [Beutenbergia
           cavernae DSM 12333]
 gi|229564953|gb|ACQ78804.1| bifunctional deaminase-reductase domain protein [Beutenbergia
           cavernae DSM 12333]
          Length = 185

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
           G  +A   I + LVD   L+ +  V+G G          +  +   V+   F S
Sbjct: 125 GPNLAAQAIAAGLVDEYHLFMTTSVVGGGKR---FFPDGVRLDLDLVQERSFDS 175


>gi|70733030|ref|YP_262803.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           fluorescens Pf-5]
 gi|68347329|gb|AAY94935.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
           fluorescens Pf-5]
          Length = 169

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 17/116 (14%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG---------RGV-TAYGGC 52
           V+  D   +  +++ +         +P  A +  +DG VI           G  T +   
Sbjct: 12  VTELDLHLLRQSIQLAEEAKARGR-HPFAALVADRDGKVIASAGNNSMPPEGDPTQHAEL 70

Query: 53  PHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
             A + A   + +   G T Y + EPC        CA  I   GI RVV  + + +
Sbjct: 71  AAAALAAKRLSPQALAGCTLYTSAEPCCM------CAGAIYWTGIGRVVYALSEHE 120


>gi|99081691|ref|YP_613845.1| bifunctional deaminase-reductase-like [Ruegeria sp. TM1040]
 gi|99037971|gb|ABF64583.1| bifunctional deaminase-reductase-like protein [Ruegeria sp. TM1040]
          Length = 176

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSP 328
           GG A A   +  +L+D +IL R+  V+G+G    G  +P
Sbjct: 114 GGGAFAGWMLKHQLIDRLILKRAPCVLGQGVPLFGADAP 152


>gi|311107007|ref|YP_003979860.1| cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Achromobacter xylosoxidans A8]
 gi|310761696|gb|ADP17145.1| cytidine and deoxycytidylate deaminase zinc-binding region family
           protein [Achromobacter xylosoxidans A8]
          Length = 164

 Score = 38.3 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 17/111 (15%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-TAYGG--CPHAEV- 57
           ++  D + ++  +  ++  +           ++V   G V+      A  G    H E  
Sbjct: 2   ITETDKKHLARCVELAKQALDAGDE--PFGSVLVSPSGEVLFEDHNHASSGDRTRHPEFE 59

Query: 58  ---QALEEAGEEARGA-TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
               A        R A T Y + E CS    +          G+ R+V   
Sbjct: 60  IARWAANNVPAAERAACTVYTSGEHCSMCASAHGWV------GLGRIVYAC 104


>gi|87311170|ref|ZP_01093293.1| probable Cytidine deaminase [Blastopirellula marina DSM 3645]
 gi|87286078|gb|EAQ77989.1| probable Cytidine deaminase [Blastopirellula marina DSM 3645]
          Length = 500

 Score = 38.3 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 9/67 (13%)

Query: 47  TAYGGCPHAEVQALEEAGE---EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           T YG   HAE+ AL          + AT Y T  PC +      CA+ I+  GI+RVV  
Sbjct: 342 TEYGRVVHAEMDALTSCARNHLSPKEATLYCTTFPCHN------CAKHILAAGIKRVVFI 395

Query: 104 VDDPDVR 110
                 +
Sbjct: 396 EPYEKSK 402


>gi|329937604|ref|ZP_08287123.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces griseoaurantiacus M045]
 gi|329303003|gb|EGG46891.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces griseoaurantiacus M045]
          Length = 201

 Score = 38.3 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 9/56 (16%)

Query: 293 EGG-------AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341
           EGG         +A + +   LVD   L    +++G G       +G +      V
Sbjct: 123 EGGDISVVGSGDLAQTLMRHGLVDEYRLTVHPVILGSG--KRLFADGAIPTALEPV 176


>gi|323697968|ref|ZP_08109880.1| CMP/dCMP deaminase, zinc-binding [Desulfovibrio sp. ND132]
 gi|323457900|gb|EGB13765.1| CMP/dCMP deaminase, zinc-binding [Desulfovibrio desulfuricans
           ND132]
          Length = 144

 Score = 38.3 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 38/139 (27%), Gaps = 17/139 (12%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEAGEE 66
           M  A   +          P  A L    G ++               HAE+  L EA   
Sbjct: 1   MDVAFGEACKAA-QAGEAPVGAALFTPTGTLLASAHNRPIAAHDPTGHAEILCLREAARV 59

Query: 67  AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
            R          VTLEPC        C   +I   +  VV    D         +Q  + 
Sbjct: 60  LRNYRLPDTILAVTLEPCLM------CTGALIHARVAGVVFAARDERAGALVSNMQGCAL 113

Query: 122 KGIIVDRMMESEGKIFLHA 140
                 R+   EG +    
Sbjct: 114 P-FTNHRLWTVEGVMGNEC 131


>gi|220919134|ref|YP_002494438.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956988|gb|ACL67372.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 219

 Score = 38.3 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 31/117 (26%)

Query: 211 LNGLQEHSPMR----IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
             G    +P+      +L  H +  L+ +            VTE     L  A       
Sbjct: 98  WKGWWGENPVYHVPVFVLTHHARPPLEMQ-----GGTTFHFVTEGIHAALDRAKEAAGGK 152

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            +                         GG A    ++ + LVD + L  S +++G G
Sbjct: 153 DVRLG----------------------GGVATVREYLAAGLVDEVHLAISPVLLGRG 187


>gi|88854954|ref|ZP_01129620.1| Pyrimidine Reductase [marine actinobacterium PHSC20C1]
 gi|88816115|gb|EAR25971.1| Pyrimidine Reductase [marine actinobacterium PHSC20C1]
          Length = 127

 Score = 38.3 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           D  + +  L  +    L V GG  +  +  ++ L+D      S  ++G G
Sbjct: 78  DPVEAIRKLKEQPGNGLYV-GGVTLPLALADAGLIDEYEFIVSPTLVGHG 126


>gi|326329004|ref|ZP_08195333.1| riboflavin biosynthesis protein RibD C- domain protein
           [Nocardioidaceae bacterium Broad-1]
 gi|325953086|gb|EGD45097.1| riboflavin biosynthesis protein RibD C- domain protein
           [Nocardioidaceae bacterium Broad-1]
          Length = 196

 Score = 38.3 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           G  V    + + LVD I+L++  +++G G
Sbjct: 135 GGGVVTEALTAGLVDEIVLHQVPVLLGSG 163


>gi|332672108|ref|YP_004455116.1| CMP/dCMP deaminase zinc-binding protein [Cellulomonas fimi ATCC
          484]
 gi|332341146|gb|AEE47729.1| CMP/dCMP deaminase zinc-binding protein [Cellulomonas fimi ATCC
          484]
          Length = 161

 Score = 38.3 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 29/100 (29%), Gaps = 11/100 (11%)

Query: 1  MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
          M VS  D   +   L  +R  +           ++V  G  +       V    G  H E
Sbjct: 1  MAVSDVDLAHLRRCLELAREALDDGDE--PFGSVLVDAGGTVLLADRNRVKDGDGTRHPE 58

Query: 57 ----VQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQF 91
                A      EE  G T Y + E C     +   A  
Sbjct: 59 LEIARWAAAHLPVEERAGCTVYTSGEHCPMCAAAHGWAGL 98


>gi|299139757|ref|ZP_07032930.1| CMP/dCMP deaminase zinc-binding [Acidobacterium sp. MP5ACTX8]
 gi|298598381|gb|EFI54546.1| CMP/dCMP deaminase zinc-binding [Acidobacterium sp. MP5ACTX8]
          Length = 512

 Score = 38.3 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 47  TAYGGCPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           T +G   HAE++A+      G    G T Y T  PC +  R       II  GI +VV  
Sbjct: 340 TEFGRAVHAEMEAILSCARKGISTVGRTLYTTTFPCHNCARH------IIGAGISKVVYI 393

Query: 104 VDDPDVRVSG 113
              P  +   
Sbjct: 394 EPYPKSKAKE 403


>gi|220911157|ref|YP_002486466.1| bifunctional deaminase-reductase domain protein [Arthrobacter
           chlorophenolicus A6]
 gi|219858035|gb|ACL38377.1| bifunctional deaminase-reductase domain protein [Arthrobacter
           chlorophenolicus A6]
          Length = 219

 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 7/91 (7%)

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
           D+ +  T    PV+++T +  P L +        I       L+K   +  G  V    +
Sbjct: 100 DNPVFHT----PVVVLTHHPRPTLEMEGGTTFHFIDADPATALEKARELAPGLDVR---I 152

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            GGA     F+ + L+D + +    I++G G
Sbjct: 153 GGGADTVRQFLEADLIDHMHIAVVPIILGRG 183


>gi|56566242|gb|AAV98449.1| FCY1 [Cryptococcus neoformans var. grubii]
          Length = 225

 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 35/117 (29%), Gaps = 29/117 (24%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGR-----GVTAYGGCPHAEVQALE 61
            +M  A   + +  G           IV      ++       GVT      H E+ A+ 
Sbjct: 39  HWMRVA-NEAVYADGHPCPQAPFGTAIVNTTSDELVCVISNKVGVTGNP-AMHGEISAIT 96

Query: 62  EAGE--EARGAT------------AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
              E   A+G T             Y   EPC      P CA  I   G + V+   
Sbjct: 97  HCTEVLTAQGWTSQEILAGWKDFSLYTNGEPC------PMCASAIRWAGFKEVIYGT 147


>gi|282865091|ref|ZP_06274144.1| bifunctional deaminase-reductase domain protein [Streptomyces sp.
           ACTE]
 gi|282560014|gb|EFB65563.1| bifunctional deaminase-reductase domain protein [Streptomyces sp.
           ACTE]
          Length = 195

 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 4/81 (4%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D    +  L       + + GG  +A   ++   +D +++    +V G  GIP+  + 
Sbjct: 113 AEDPVGFVRTLKREEGKDIWLCGGGRLAGELLHE--IDELLIKSYPVVAGA-GIPA-FDG 168

Query: 332 GYLEKNFMCVRRDYFGSDVCL 352
            +    F    R  FG+ V L
Sbjct: 169 AFDPTVFEVAERTAFGNGVTL 189


>gi|71027665|ref|XP_763476.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68350429|gb|EAN31193.1| hypothetical protein, conserved [Theileria parva]
          Length = 312

 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 38/127 (29%), Gaps = 32/127 (25%)

Query: 13  AALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC--PHAEVQA---LEEAGEE 66
            AL+ S+              C+I     VI             HA + A   + EA ++
Sbjct: 166 RALKESKERGSKCV-------CIITFKDKVISTAFDERDVNILKHASILAVNKIAEAKKK 218

Query: 67  AR-------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
                          G   Y++ EPC   G        ++   I +V+  + +  +   G
Sbjct: 219 RETQKIKDYPDYLCTGCEVYLSHEPCCMCG------MALLHSRISKVIYGIKNHKLGCFG 272

Query: 114 RGLQWLS 120
                 +
Sbjct: 273 SVWNLHN 279


>gi|296140216|ref|YP_003647459.1| bifunctional deaminase-reductase domain protein [Tsukamurella
           paurometabola DSM 20162]
 gi|296028350|gb|ADG79120.1| bifunctional deaminase-reductase domain protein [Tsukamurella
           paurometabola DSM 20162]
          Length = 189

 Score = 38.0 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 65/202 (32%), Gaps = 27/202 (13%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSV--PITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
              +   +AVS D  I   G      P+    S+          D +  G+   L   P 
Sbjct: 1   MRSLVYYVAVSLDGRIAGPGGEYDFYPVDEEYSRQMNEEW---GDGLPTGLHEALGITPP 57

Query: 207 LTCRLNGLQEHSPMRIIL-DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
           LT + +         +++    ++L  D  +         I+ + +            + 
Sbjct: 58  LT-KWDT--------VVMGTTTYRLGTDMGVTDPYSHLRTIVYSRS--------LAAADF 100

Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
             +     D  + +  L  +    + + GG  +A +      VD + L    +  G+ GI
Sbjct: 101 PAVEVVAEDPVEHMRALKQQDGGDIWLCGGGKLAATLAPE--VDKLALKIYPVTAGD-GI 157

Query: 326 PSPLEEGYLEKNFMCVRRDYFG 347
           P     G+  + +  V +  F 
Sbjct: 158 P-LFAGGFAPQQWKLVAQRVFD 178


>gi|134101530|ref|YP_001107191.1| bifunctional deaminase-reductase-like protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291008189|ref|ZP_06566162.1| bifunctional deaminase-reductase-like protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133914153|emb|CAM04266.1| bifunctional deaminase-reductase-like protein [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 187

 Score = 38.0 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-NFMCVRRDYFGSDVCLEYIGK 357
           I+  LVD + ++R+ +V+G G   +P      E      V    FGS V  E  G+
Sbjct: 129 IDLGLVDELRMFRNPVVVGGG---TPFLPPVTEHVRLDLVETRTFGSRVIYERYGR 181


>gi|319764026|ref|YP_004127963.1| chase2 domain protein [Alicycliphilus denitrificans BC]
 gi|330823710|ref|YP_004387013.1| multi-sensor signal transduction histidine kinase [Alicycliphilus
           denitrificans K601]
 gi|317118587|gb|ADV01076.1| CHASE2 domain protein [Alicycliphilus denitrificans BC]
 gi|329309082|gb|AEB83497.1| multi-sensor signal transduction histidine kinase [Alicycliphilus
           denitrificans K601]
          Length = 768

 Score = 38.0 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 51/162 (31%), Gaps = 8/162 (4%)

Query: 34  LIV--KDGIVIGRGVTAYGGCPHAE-VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQ 90
           +IV   D  +   G   +    HA+ ++ +      A G       E   + G     A+
Sbjct: 61  VIVAIDDRSIEAIGRWPWRRALHAQLIEQISAQSPRALGLDILFGEEDADYPGDDLLLAR 120

Query: 91  FIIECGIRRVVVCVDDPDVRVSGRG-LQWLSQK----GIIVDRMMESEGKIFLHAYLTRQ 145
            +   G   + V   D   R +    L  L +     G +  ++        L+     Q
Sbjct: 121 ALERSGRAVLPVARRDLGSRSAADAPLALLRRASAQLGHVQVQVDPDGVARSLYRTEGPQ 180

Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
                H +  +  +    +      + P  G  ++  + +LR
Sbjct: 181 DALWPHFSTAMLCAAGRDLPDCRGNAAPAGGPWARRDLQILR 222


>gi|296119603|ref|ZP_06838161.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295967486|gb|EFG80753.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 236

 Score = 38.0 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 5/104 (4%)

Query: 224 LDPHFKLSLDSKIIK--TALLAPVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLL 279
           +D    L  D             V ++            R   ++ I       D+ + +
Sbjct: 87  VDRKGSLKWDRSSFNYFDVEAHIVELIPNYVSDAFKAHLRSVGVSYIIAGDSELDMAEAV 146

Query: 280 TILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
             +        +++ GG  +  S +   L D + L       GE
Sbjct: 147 RKIGEVFHTEEIILGGGGTLNWSMLRQGLCDELSLVLMPTADGE 190


>gi|182413186|ref|YP_001818252.1| deaminase-reductase domain-containing protein [Opitutus terrae
           PB90-1]
 gi|177840400|gb|ACB74652.1| bifunctional deaminase-reductase domain protein [Opitutus terrae
           PB90-1]
          Length = 199

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 251 NDDPVLALAFRK--KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
            D PV  L  RK  +N   +     DL + +   +     ++ + GG++V    +   L 
Sbjct: 80  GDKPVFVLTTRKLPRNRGTVEFHSGDLTQFVNERLRPAFRNIWLVGGSSVCGECLRRGLA 139

Query: 309 DSIILYRSQIVIGEG 323
           D +      I++GEG
Sbjct: 140 DEVRYSILPILLGEG 154


>gi|152996717|ref|YP_001341552.1| zinc-binding CMP/dCMP deaminase [Marinomonas sp. MWYL1]
 gi|150837641|gb|ABR71617.1| CMP/dCMP deaminase zinc-binding [Marinomonas sp. MWYL1]
          Length = 158

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 18/104 (17%)

Query: 1  MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGG-------C 52
          M +++ D  F+  +   +         +P  A ++V D   V+   +T   G        
Sbjct: 1  MKLNTKDTEFLRQSFALAEEAKQQ-GIHP-FAAILVDDEDNVL---MTQVNGYLPDFDMT 55

Query: 53 PHAEVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQF 91
           HAE + +  A +  R       T YV+ EPC+    S   A  
Sbjct: 56 GHAERKLMTRASKAYRPDFLAKCTMYVSAEPCAMCAGSAYWAGL 99


>gi|318056434|ref|ZP_07975157.1| bifunctional deaminase-reductase domain protein [Streptomyces sp.
           SA3_actG]
 gi|318075459|ref|ZP_07982791.1| bifunctional deaminase-reductase domain protein [Streptomyces sp.
           SA3_actF]
          Length = 205

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
           GG  +    + + ++D + L+   +++G GG P   +  +  +     R + 
Sbjct: 142 GGGQIVSGALAAGVLDELRLHVVPVLLG-GGRPLFAQPLHPARVLETTRAEM 192


>gi|284992368|ref|YP_003410922.1| bifunctional deaminase-reductase domain-containing protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284065613|gb|ADB76551.1| bifunctional deaminase-reductase domain protein [Geodermatophilus
           obscurus DSM 43160]
          Length = 208

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 6/118 (5%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           P ++V+++  P     + +    +   +       L    G     +LV G   +    +
Sbjct: 94  PKVVVSDSLTPADTGPWAQTTTIVRRAEAHAAVAALQEEAG---GDVLVFGSRTLWGDLL 150

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIGKNLC 360
            + LVD + L     ++G G    P  +G      +       GSD V L Y      
Sbjct: 151 PAGLVDELFLLVGPALLGAGLRAFP--DGVPAHLRLRDTSRRPGSDSVLLHYTVDRAR 206


>gi|257068551|ref|YP_003154806.1| pyrimidine reductase, riboflavin biosynthesis [Brachybacterium
           faecium DSM 4810]
 gi|256559369|gb|ACU85216.1| pyrimidine reductase, riboflavin biosynthesis [Brachybacterium
           faecium DSM 4810]
          Length = 248

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 52/157 (33%), Gaps = 20/157 (12%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL--------- 201
           H+   +  + D  +  A   S  +          +LRA +D +LVG  TV          
Sbjct: 41  HVRAMMNTTIDGAVAGADGTSGSLRNPEDSFVFDVLRALTDVVLVGAETVRVEDYRRPLG 100

Query: 202 -ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
            AD    + R  G     P   I      L    ++       P  ++T +D    A   
Sbjct: 101 RADLLRPSRRPGGAAR--PALAIWSRSGVLPESIEV-----DQPTYLLTGSDVAEQAARR 153

Query: 261 RKKNIN-IIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
                  +I  D     + L  L  RG+ ++  EGG 
Sbjct: 154 AGIPPEQVIVADTA--AEALQQLAARGLRAVQAEGGP 188


>gi|229818772|ref|YP_002880298.1| bifunctional deaminase-reductase domain protein [Beutenbergia
           cavernae DSM 12333]
 gi|229564685|gb|ACQ78536.1| bifunctional deaminase-reductase domain protein [Beutenbergia
           cavernae DSM 12333]
          Length = 191

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 51/153 (33%), Gaps = 19/153 (12%)

Query: 209 CRLNGLQEHSPMR----IILDPHFKLS-LDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
            R +     +P R    I++        LD+ +          +V+   + V        
Sbjct: 48  VRAHLGMPDTPNRHFDTIVMGRRTYTPALDAGVTSPYAHLRQYVVSTTQEQV------DP 101

Query: 264 NINIIYCDCRDLKKLLTILVGRGVT-SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
           ++ I+     D   L+  L        + + GG  +A + ++   +D +I+    +V G 
Sbjct: 102 DVTIVRT---DPIALVRELKAEDSQLDIYLAGGGTLAGALLSE--IDRLIVKLYPVVAGA 156

Query: 323 GGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLEY 354
            G  +     +    F       F G +  L Y
Sbjct: 157 -GKQAFGGSAFAPTAFDLTDVTTFDGGNAVLTY 188


>gi|190892283|ref|YP_001978825.1| dihydrofolate reductase [Rhizobium etli CIAT 652]
 gi|190697562|gb|ACE91647.1| probable dihydrofolate reductase protein [Rhizobium etli CIAT 652]
          Length = 213

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           GG A    ++ + LVD +    + +V+G+G  
Sbjct: 152 GGVATVRQYLQAGLVDELHFAVAPVVLGKGEA 183


>gi|119960905|ref|YP_947764.1| riboflavin biosynthesis protein RibD [Arthrobacter aurescens TC1]
 gi|119947764|gb|ABM06675.1| riboflavin biosynthesis protein RibD [Arthrobacter aurescens TC1]
          Length = 204

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLEYI 355
           ++  S + + LVD   L    ++ G+ G    + +GY +     V    F G    LEY+
Sbjct: 135 SLCRSLLAAGLVDRYRLVVFPVITGKTGRER-IYDGYPDVALDMVDSRTFDGRLQLLEYV 193

Query: 356 GK 357
            +
Sbjct: 194 PR 195


>gi|291296680|ref|YP_003508078.1| bifunctional deaminase-reductase domain-containing protein
           [Meiothermus ruber DSM 1279]
 gi|290471639|gb|ADD29058.1| bifunctional deaminase-reductase domain protein [Meiothermus ruber
           DSM 1279]
          Length = 212

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 3/81 (3%)

Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
            PV ++T                 I     R L+        R +    + GGA V   +
Sbjct: 102 TPVYVLTHEKREPWVRPGGTTFYFINDGPERALELARASAGSRDIR---ISGGADVIQQY 158

Query: 303 INSRLVDSIILYRSQIVIGEG 323
           +N  +VD + +    ++ G G
Sbjct: 159 LNLGVVDELEIALVPVLFGGG 179


>gi|259415788|ref|ZP_05739708.1| cytidine and deoxycytidylate deaminase family protein
          [Silicibacter sp. TrichCH4B]
 gi|259347227|gb|EEW59004.1| cytidine and deoxycytidylate deaminase family protein
          [Silicibacter sp. TrichCH4B]
          Length = 150

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 30 SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAG------EEARGATAYVTLEP 78
           V  ++V   G V+ R             HAEV  +  AG      E   G   YVTLEP
Sbjct: 24 PVGAVLVNPSGEVVARAGNRTRELNDPTAHAEVLVIR-AGCAVLGSERLTGHDLYVTLEP 82


>gi|229916714|ref|YP_002885360.1| bifunctional deaminase-reductase domain protein [Exiguobacterium
           sp. AT1b]
 gi|229468143|gb|ACQ69915.1| bifunctional deaminase-reductase domain protein [Exiguobacterium
           sp. AT1b]
          Length = 197

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 8/83 (9%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG------GIPS 327
           +  + L  L       L V G   + H+ + + L+D + L    I+IG G      G   
Sbjct: 107 EPVEALKRLKQEEGPDLHVWGSGELVHTLLANNLIDEVRLIVYPIIIGSGKRLFPDGNIL 166

Query: 328 PLEEGYLEKNFMC--VRRDYFGS 348
           PL+   +E+  M   V    +G 
Sbjct: 167 PLQLDVIEQQLMPNGVHVVRYGR 189


>gi|332524984|ref|ZP_08401168.1| cmp/dcmp deaminase zinc-binding protein [Rubrivivax benzoatilyticus
           JA2]
 gi|332108277|gb|EGJ09501.1| cmp/dcmp deaminase zinc-binding protein [Rubrivivax benzoatilyticus
           JA2]
          Length = 161

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 16/116 (13%)

Query: 1   MPVSSFDA--RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEV 57
           M   + D    ++  A   +   +     +P    ++V  DG  +           HAE 
Sbjct: 1   MTTPAPDRLLAWLRRANEVAARALAEGR-HP-FGAVLVGPDGDTVLLEQGNVSAVEHAEA 58

Query: 58  QALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
               EA      E   G T   T+EPC+    +   A      GI R+V  +++ +
Sbjct: 59  VLAREAARRWAPEFLAGCTLVTTVEPCAMCAGTQYWA------GIGRLVYGMEERE 108


>gi|254498335|ref|ZP_05111074.1| cytidine/deoxycytidylate deaminase [Legionella drancourtii LLAP12]
 gi|254352443|gb|EET11239.1| cytidine/deoxycytidylate deaminase [Legionella drancourtii LLAP12]
          Length = 157

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 40/111 (36%), Gaps = 23/111 (20%)

Query: 10  FMSAALRFSRWHVGLTSTNP--SVACLIV-KDGIVIGRGVTAYGGCP--HAE---VQALE 61
           FM+A +  +         NP      +IV  D  ++ + V +    P  H E   +  L 
Sbjct: 8   FMTATIEIAAS-------NPIAPYGAIIVYDDKEILLKSVNSAHHHPLMHGELSVIHTLF 60

Query: 62  EAG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
             G   +    + Y T EPC      P CA  I    I +VV     P + 
Sbjct: 61  NKGFNGDVSKLSLYTTAEPC------PMCAAAIYWAMIPKVVYGTSIPFLH 105


>gi|197124394|ref|YP_002136345.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
           sp. K]
 gi|196174243|gb|ACG75216.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
           sp. K]
          Length = 204

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 2/50 (4%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
           G A +  + +   LVD   LY   +++G G        G        V  
Sbjct: 132 GSAELLQTLLEHDLVDEYRLYVFPVLLGSG--KRLFAGGTAPAALRRVET 179


>gi|222083077|ref|YP_002542442.1| bifunctional deaminase-reductase, C-terminal [Agrobacterium
           radiobacter K84]
 gi|221727756|gb|ACM30845.1| bifunctional deaminase-reductase, C-terminal [Agrobacterium
           radiobacter K84]
          Length = 178

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 37/90 (41%), Gaps = 7/90 (7%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           PV++++         +  +  +          ++ +  L   G     V+GG  +  SF+
Sbjct: 69  PVLVLSAQFARQAVPSELEGKVR---FSAESPEQAMATLQSEGARRAYVDGG-RIIQSFL 124

Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
              +++ +++ R  I++G G    PL  G 
Sbjct: 125 ALDMINDMVITRVPILLGTGR---PLFGGG 151


>gi|295100049|emb|CBK89138.1| Dihydrofolate reductase [Eubacterium cylindroides T2-87]
          Length = 190

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 25/65 (38%)

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
              + +   I     DL + +  L      ++ + GGA V    ++  L+D   +     
Sbjct: 80  HREEASSEKIRFINEDLNEFVIKLKKEKGKNIWICGGANVVQQLMDEDLIDVYNVTIIPT 139

Query: 319 VIGEG 323
           ++G G
Sbjct: 140 ILGSG 144


>gi|302519372|ref|ZP_07271714.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sp. SPB78]
 gi|302428267|gb|EFL00083.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sp. SPB78]
          Length = 208

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
           GG  +    + + ++D + L+   +++G GG P   E  +  +     R + 
Sbjct: 145 GGGQIVSGALAAGVLDELRLHVVPVLLG-GGRPLFSEPLHPARVLETTRAEM 195


>gi|294633377|ref|ZP_06711936.1| DNA-binding protein [Streptomyces sp. e14]
 gi|292831158|gb|EFF89508.1| DNA-binding protein [Streptomyces sp. e14]
          Length = 214

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 18/30 (60%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GG +    F+++ LVD++ +  + + +G G
Sbjct: 152 GGVSTIRQFLDADLVDTLHVAVAPVKLGSG 181


>gi|271965577|ref|YP_003339773.1| cytidine/deoxycytidylate deaminase, zinc-binding region
          [Streptosporangium roseum DSM 43021]
 gi|270508752|gb|ACZ87030.1| cytidine/deoxycytidylate deaminase, zinc-binding region
          [Streptosporangium roseum DSM 43021]
          Length = 159

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 26/96 (27%), Gaps = 11/96 (11%)

Query: 5  SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG---CPHAEVQ-- 58
            D R +   +  +   + +         ++V  DG V+              H E +  
Sbjct: 4  DTDLRHLRRCVELATEALEVGDE--PFGSVLVAADGTVLAEDHNRVASGDRTRHPEFELA 61

Query: 59 ---ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQF 91
             A      +   AT Y + E C     +      
Sbjct: 62 RWAAANMTPGDRAAATVYTSGEHCPMCAAAHGWVGL 97


>gi|222082119|ref|YP_002541484.1| hypothetical protein Arad_8671 [Agrobacterium radiobacter K84]
 gi|221726798|gb|ACM29887.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 158

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 37/113 (32%), Gaps = 18/113 (15%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----CPHA 55
           M     D  F+  +   +       + N     ++V  DG V+     AY        HA
Sbjct: 1   MTAPLNDEVFLRRSFEVAARARL--NGNHPFGAILVGPDGTVLMEQENAYNPTQDMTGHA 58

Query: 56  EVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           E   +  A ++           Y + EPC+       CA      G+ RVV  
Sbjct: 59  ERVLMTRASQQYSPGFLVQCAMYTSAEPCAM------CAGAAYWAGVGRVVYG 105


>gi|296532916|ref|ZP_06895577.1| riboflavin biosynthesis protein RibD domain protein [Roseomonas
           cervicalis ATCC 49957]
 gi|296266746|gb|EFH12710.1| riboflavin biosynthesis protein RibD domain protein [Roseomonas
           cervicalis ATCC 49957]
          Length = 78

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 308 VDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           VD +  + +  +IG  G P+    PLE       +        G+D+  EY
Sbjct: 19  VDRLAWFHAPAIIGGDGRPALDALPLELLSAMPRYRRTALALPGADLFSEY 69


>gi|258625859|ref|ZP_05720734.1| deoxycytidylate deaminase-related protein [Vibrio mimicus VM603]
 gi|258581823|gb|EEW06697.1| deoxycytidylate deaminase-related protein [Vibrio mimicus VM603]
          Length = 517

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 14/73 (19%)

Query: 54  HAEVQAL----EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           HAE+ A+      +G  + G T Y T  PC +  R       I+  GI RVV      + 
Sbjct: 371 HAEMDAIISLARRSGSNSVGKTLYCTTYPCHNCARH------IVAAGIERVVYI----EP 420

Query: 110 RVSGRGLQWLSQK 122
                 +      
Sbjct: 421 YEKSLAMDLHDDA 433


>gi|325282775|ref|YP_004255316.1| bifunctional deaminase-reductase domain-containing protein
           [Deinococcus proteolyticus MRP]
 gi|324314584|gb|ADY25699.1| bifunctional deaminase-reductase domain protein [Deinococcus
           proteolyticus MRP]
          Length = 180

 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 10/118 (8%)

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
              PV + +  D PV          ++       ++ L  I    G +++ ++G   +A 
Sbjct: 71  GDKPVFVFSSRDLPV------PAGADVRLLRGSVVEHLPAIRQAAGSSNVWIQGSGDLAG 124

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-KNFMCVRRDYFGSDVCLEYIGK 357
            F+++  +D I L  + + +  G    PL    +       +     G    L +  +
Sbjct: 125 QFLDAGALDEIALDVAPVALTAG---MPLLPREVRWPRLKLLEARMNGDFARLRWRVE 179


>gi|326385119|ref|ZP_08206788.1| cytidine/deoxycytidylate deaminase family protein [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326196152|gb|EGD53357.1| cytidine/deoxycytidylate deaminase family protein [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 154

 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 41/132 (31%), Gaps = 22/132 (16%)

Query: 30  SVACLIV-KDGIVIGRGVTAYGG----CPHAEVQALEEA------GEEARGATAYVTLEP 78
            +  ++   DG  + R             HAE+ AL  A      G      T  VT+EP
Sbjct: 25  PIGAVVFGPDGRELARAANRREADADPTAHAEILALRAAAARHGDGWRLSDCTLAVTVEP 84

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESE 133
           C        CA  I    I RVV    +P     G     L       +  ++  + E E
Sbjct: 85  C------TMCAGAIGLARISRVVFGAWEPKTGAVGSLWDVLRDPRQMYRPEVLAGVREDE 138

Query: 134 GKIFLHAYLTRQ 145
               +  +    
Sbjct: 139 CAALVRDFFAAH 150


>gi|229820577|ref|YP_002882103.1| bifunctional deaminase-reductase domain protein [Beutenbergia
           cavernae DSM 12333]
 gi|229566490|gb|ACQ80341.1| bifunctional deaminase-reductase domain protein [Beutenbergia
           cavernae DSM 12333]
          Length = 201

 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 2/84 (2%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           DL   +  L  R   +L V G   +    +   LVD + L    +++G G    P     
Sbjct: 111 DLAAAVGELRSRPGGTLNVPGSGRLIRWLLEHDLVDEVNLLVCPVIVGAGTRLFPESGPD 170

Query: 334 LEKNFMCVRRDYFGSDVCLEYIGK 357
           L      V    F   + L+    
Sbjct: 171 LA--LQLVESRSFPRGITLQVYRP 192


>gi|319784173|ref|YP_004143649.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317170061|gb|ADV13599.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 215

 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                 PV ++T +    + +        +I      L++      G+ V    V GG A
Sbjct: 100 NPPYHVPVFVLTHHKREPITMEGGTTFHFVIDGIHSALEQAKAAAGGKDVR---VGGGVA 156

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323
               ++  +L+D + L  + +++G G
Sbjct: 157 TIRQYLQEKLIDEMHLAIAPVLLGTG 182


>gi|294632683|ref|ZP_06711242.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sp. e14]
 gi|292830464|gb|EFF88814.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sp. e14]
          Length = 212

 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 10/84 (11%)

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
           +   +N  ++  D  D  + L    G  V  +   G   +A + +   LVD   L    +
Sbjct: 110 SVEWQNSTLLEGDVVDAVRKLKASDGGNVNVV---GSGDLAQTLMRHGLVDEYRLTIHPV 166

Query: 319 VIG-------EGGIPSPLEEGYLE 335
           +IG        G IP+ LE   + 
Sbjct: 167 IIGTGKRLFAGGAIPTALEPVGVS 190


>gi|260902633|ref|ZP_05911028.1| cytidine/deoxycytidylate deaminase family protein [Vibrio
           parahaemolyticus AQ4037]
 gi|308109616|gb|EFO47156.1| cytidine/deoxycytidylate deaminase family protein [Vibrio
           parahaemolyticus AQ4037]
          Length = 518

 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 14/73 (19%)

Query: 54  HAEVQAL----EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           HAE+ A+      +G  + G T Y T  PC +  R       I+  G+ RVV      + 
Sbjct: 372 HAEMDAIISLARRSGSNSVGKTLYCTTYPCHNCARH------IVAAGVERVVYI----EP 421

Query: 110 RVSGRGLQWLSQK 122
                 +      
Sbjct: 422 YEKSLAMDLHDDA 434


>gi|254389006|ref|ZP_05004237.1| dihydrofolate reductase [Streptomyces clavuligerus ATCC 27064]
 gi|326443313|ref|ZP_08218047.1| hypothetical protein SclaA2_19708 [Streptomyces clavuligerus ATCC
           27064]
 gi|197702724|gb|EDY48536.1| dihydrofolate reductase [Streptomyces clavuligerus ATCC 27064]
          Length = 193

 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 4/85 (4%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           DL   +  L       + + GGA +A    +   VD ++L    +V+G  G+P   + G+
Sbjct: 112 DLVARVAELKREDGLGIYLCGGANLAGQLRDE--VDELVLKTYPVVLGS-GMPM-FDSGF 167

Query: 334 LEKNFMCVRRDYFGSDVCLEYIGKN 358
              +F       F + V +    + 
Sbjct: 168 QVDDFALDSLRAFDNGVVVRTYRRE 192


>gi|255641124|gb|ACU20840.1| unknown [Glycine max]
          Length = 168

 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 39/126 (30%), Gaps = 36/126 (28%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVAC--------------LIVKDGIVIGRGVTA 48
           V   D +F++ A+  +   V      P                  +++++          
Sbjct: 34  VQDRDHKFLTKAVEEAYKGVECGDGGP-FGAVVVLNDEVVVSCHNMVLRN---------- 82

Query: 49  YGGCPHAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                HAEV A+ EA ++           Y + EPC      P C   I    I+R+V  
Sbjct: 83  TDPTAHAEVTAIREACQKLNQIELADCEIYASCEPC------PMCFGAIHLSRIKRLVYG 136

Query: 104 VDDPDV 109
                 
Sbjct: 137 AKAEAA 142


>gi|256370914|ref|YP_003108738.1| phenylacetic acid degradation protein paaN [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256007498|gb|ACU53065.1| phenylacetic acid degradation protein paaN [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 688

 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 44/122 (36%), Gaps = 12/122 (9%)

Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
           +++       L +   + A +AP ++V  + D                   +D +     
Sbjct: 359 VVVGGDLDDVLGADPERGAFVAPTLLVARDADRDEPHRIEAFGPVATVLGYQDPQHA-AK 417

Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ-----IVIGEGGIPSPLEEGYLEK 336
           L  RG  SL+    A+V  +  ++R+VD +++  +      +V+     P+    G    
Sbjct: 418 LAARGAGSLV----ASVVSA--DARVVDELVMELAPWHGRILVLDATSAPASTGHGSPLP 471

Query: 337 NF 338
             
Sbjct: 472 RL 473


>gi|262408515|ref|ZP_06085061.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|262353380|gb|EEZ02474.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 159

 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 12/109 (11%)

Query: 222 IILDPHFKL----SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277
           IIL    +L    +LD  +    + +P+    +N +       R++    +  D   +  
Sbjct: 22  IILMAKLQLLAITTLDGYLFDRTVSSPLW---DNPNKYGLTKIRERATQTLGPDVSFISL 78

Query: 278 LLTILVGRGVTSLLVEGGA---AVAHSFINSRLVDSIILYRSQIVIGEG 323
                   G+    +E      +V  S     LVD IIL+ +  + G+G
Sbjct: 79  TQWKKKNEGIY--FIEAAPDTISVISSMFRYWLVDEIILFVAPYIQGDG 125


>gi|229820310|ref|YP_002881836.1| bifunctional deaminase-reductase domain protein [Beutenbergia
           cavernae DSM 12333]
 gi|229566223|gb|ACQ80074.1| bifunctional deaminase-reductase domain protein [Beutenbergia
           cavernae DSM 12333]
          Length = 211

 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 3/86 (3%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                 PV ++T +  P + +   +      + D    + L           + + GG  
Sbjct: 94  NPPFHTPVFVLTHHPRPSIEM---EGGTTFHFLDASPAEALEQARKAADGDDVRIGGGPT 150

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323
           V   F+ + LVD + +    I++G G
Sbjct: 151 VIRDFLAAGLVDYMSVAIVPILLGRG 176


>gi|260642150|ref|ZP_05414697.2| conserved hypothetical protein [Bacteroides finegoldii DSM 17565]
 gi|260623361|gb|EEX46232.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565]
          Length = 190

 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 12/109 (11%)

Query: 222 IILDPHFKL----SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277
           IIL    +L    +LD  +    + +P+    +N +       R++    +  D   +  
Sbjct: 53  IILMAKLQLLAITTLDGYLFDRTVSSPLW---DNPNKYGLTKIRERATQTLGPDVSFISL 109

Query: 278 LLTILVGRGVTSLLVEGGA---AVAHSFINSRLVDSIILYRSQIVIGEG 323
                   G+    +E      +V  S     LVD IIL+ +  + G+G
Sbjct: 110 TQWKKKNEGIY--FIEAAPDTISVISSMFRYWLVDEIILFVAPYIQGDG 156


>gi|86160330|ref|YP_467115.1| bifunctional deaminase-reductase-like protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776841|gb|ABC83678.1| bifunctional deaminase-reductase-like protein [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 221

 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 31/117 (26%)

Query: 211 LNGLQEHSPMR----IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
             G    +P+      +L  H +  L+ +            VTE     L  A       
Sbjct: 97  WKGWWGENPVYHVPVFVLTHHARPPLEMQ-----GGTTFHFVTEGIHAALDRAKEAARGK 151

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            +                         GG A    ++ + LVD + L  S +++G G
Sbjct: 152 DVRLG----------------------GGVATVREYLAAGLVDELHLAISPVLLGRG 186


>gi|159184669|ref|NP_354231.2| DNA-binding protein [Agrobacterium tumefaciens str. C58]
 gi|159139964|gb|AAK87016.2| DNA-binding protein [Agrobacterium tumefaciens str. C58]
          Length = 214

 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           PV ++T +  P   +    +   +       L + LT   G+ V    + GG +    ++
Sbjct: 105 PVFVLTHHARPSFTMKGGTEFHFVTDGIEAALDRALTAANGKDVR---IGGGVSTIRQYM 161

Query: 304 NSRLVDSIILYRSQIVIGEG 323
            + ++D + L  + + +G+G
Sbjct: 162 AAGMIDELHLALAPVFLGKG 181


>gi|284034012|ref|YP_003383943.1| bifunctional deaminase-reductase domain-containing protein
           [Kribbella flavida DSM 17836]
 gi|283813305|gb|ADB35144.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
           DSM 17836]
          Length = 179

 Score = 38.0 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           D  K +  L  +G   L++ G   +A + +   LVD +  +   +V G G   +P+    
Sbjct: 96  DPVKSVAELKTQGDGDLVIYGFGRLAQTLLEHDLVDELNFWLHPVVAGSG---TPVFRSG 152

Query: 334 LEKNFMCVRRDY 345
           +          +
Sbjct: 153 ISSRLDLAEVSH 164


>gi|300113775|ref|YP_003760350.1| CMP/dCMP deaminase zinc-binding protein [Nitrosococcus watsonii
          C-113]
 gi|299539712|gb|ADJ28029.1| CMP/dCMP deaminase zinc-binding protein [Nitrosococcus watsonii
          C-113]
          Length = 159

 Score = 37.6 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 11/98 (11%)

Query: 3  VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG---CPHAEVQ 58
          +   D +++   +  +   +           ++V  DG V+              H E +
Sbjct: 2  IKDSDMQYLRRCVELAAKALESGDE--PFGSVLVAADGKVLFEDRNRVASGDRTRHPEFE 59

Query: 59 -----ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQF 91
               A   + E    AT Y + E C     +      
Sbjct: 60 IARWAAANMSPEARVAATVYTSGEHCPMCAAAHGWVGL 97


>gi|257880878|ref|ZP_05660531.1| dihydrofolate reductase [Enterococcus faecium 1,231,502]
 gi|294622974|ref|ZP_06701865.1| riboflavin biosynthesis protein RibD C-domain protein [Enterococcus
           faecium U0317]
 gi|257816536|gb|EEV43864.1| dihydrofolate reductase [Enterococcus faecium 1,231,502]
 gi|291597626|gb|EFF28786.1| riboflavin biosynthesis protein RibD C-domain protein [Enterococcus
           faecium U0317]
 gi|315162292|gb|EFU06309.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
           TX0645]
          Length = 176

 Score = 37.6 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 22/56 (39%)

Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           I+    +   LL  L       + + GGA +    ++  ++D   +     ++G G
Sbjct: 89  IHFTSENPVLLLERLKQEAGKDIWICGGANLVQQLVSKNMIDKYYISVIPTLLGNG 144


>gi|302541276|ref|ZP_07293618.1| cytidine/deoxycytidylate deaminase, zinc-binding region
          [Streptomyces hygroscopicus ATCC 53653]
 gi|302458894|gb|EFL21987.1| cytidine/deoxycytidylate deaminase, zinc-binding region
          [Streptomyces himastatinicus ATCC 53653]
          Length = 158

 Score = 37.6 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 3/53 (5%)

Query: 3  VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPH 54
          ++  D R +   +  +   +           ++V  DG V+        G  H
Sbjct: 1  MTDDDLRHLRRCVELATEALEAGDE--PFGSVLVAADGTVLAEDHNQVAGGDH 51


>gi|261407074|ref|YP_003243315.1| bifunctional deaminase-reductase domain-containing protein
           [Paenibacillus sp. Y412MC10]
 gi|261283537|gb|ACX65508.1| bifunctional deaminase-reductase domain protein [Paenibacillus sp.
           Y412MC10]
          Length = 183

 Score = 37.6 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 24/72 (33%), Gaps = 3/72 (4%)

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
            L+  G   + V GG  +  +     LVD        IV G G  P  L       N   
Sbjct: 108 RLMAEGKNLV-VNGGPGLGSTLAQLGLVDEYHFLVQPIVAGHG--PQLLGGVRDRLNLKL 164

Query: 341 VRRDYFGSDVCL 352
                FGS V +
Sbjct: 165 TETKPFGSGVVV 176


>gi|284029082|ref|YP_003379013.1| bifunctional deaminase-reductase domain-containing protein
           [Kribbella flavida DSM 17836]
 gi|283808375|gb|ADB30214.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
           DSM 17836]
          Length = 205

 Score = 37.6 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 1/81 (1%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           D    +  L  +    L + G A + +  + + L+D++ L  +  VIG G        G 
Sbjct: 108 DPIAAVGKLKAQPGRELQIHGSARLGNFLLAAGLLDAVRLVIAPAVIGSGRRLFDHRGGS 167

Query: 334 LEKNFMCVRRDYFGSDVCLEY 354
                        G  V LEY
Sbjct: 168 GGLRLTKHESTPKGL-VLLEY 187


>gi|297201103|ref|ZP_06918500.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sviceus ATCC 29083]
 gi|197712109|gb|EDY56143.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sviceus ATCC 29083]
          Length = 191

 Score = 37.6 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
           A+  + + + LVD + +    ++ G  G+  P+  G  + +   +       ++
Sbjct: 129 AMNRALMAAGLVDRVQVTVFPVITGRTGLD-PVFRGAEDFDLELLESRTLDRNI 181


>gi|94985096|ref|YP_604460.1| tRNA(Ile)-lysidine synthetase-like protein [Deinococcus
           geothermalis DSM 11300]
 gi|94555377|gb|ABF45291.1| tRNA(Ile)-lysidine synthetase-like protein and cytosine deaminase
           [Deinococcus geothermalis DSM 11300]
          Length = 539

 Score = 37.6 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 40/103 (38%), Gaps = 16/103 (15%)

Query: 30  SVACLIV-KDGIVIGRGVT----AYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPC 79
            V  +++  DG VIGRG            HAE+ AL EA            T  VTLEPC
Sbjct: 406 PVGAVVLGPDGAVIGRGRNTSREHGDMTRHAELAALREAAHSLGTPYLTDCTLVVTLEPC 465

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
                 P C   I+E  + RVV    +P     G     L+  
Sbjct: 466 ------PMCLGAILEARVGRVVYGAPNPKAGALGGVTDLLTAH 502


>gi|298251269|ref|ZP_06975072.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
           racemifer DSM 44963]
 gi|297545861|gb|EFH79729.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
           racemifer DSM 44963]
          Length = 177

 Score = 37.6 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 284 GRGVTS-LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
            R ++  +L++GG+ + +  +   L+D   L    IV+G+G       EG  ++      
Sbjct: 104 KREISRNILIDGGSDLVNLLMRHDLIDEYRLLVHPIVLGKG--KRLFREGSPKRELRLRE 161

Query: 343 RDYF 346
               
Sbjct: 162 ARAL 165


>gi|251798524|ref|YP_003013255.1| bifunctional deaminase-reductase domain protein [Paenibacillus sp.
           JDR-2]
 gi|247546150|gb|ACT03169.1| bifunctional deaminase-reductase domain protein [Paenibacillus sp.
           JDR-2]
          Length = 188

 Score = 37.6 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 3/58 (5%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           G    A + +   L+D  +L    +V+G G     + +G  +     +    F S + 
Sbjct: 126 GSPGAAKTLLELGLIDEFLLTICPVVLGSGKS---VFDGGEKIRLKLLSSRTFDSGII 180


>gi|260656420|pdb|3JTW|A Chain A, Crystal Structure Of Putative Dihydrofolate Reductase
           (Yp_805003.1) From Pediococcus Pentosaceus Atcc 25745 At
           1.90 A Resolution
 gi|260656421|pdb|3JTW|B Chain B, Crystal Structure Of Putative Dihydrofolate Reductase
           (Yp_805003.1) From Pediococcus Pentosaceus Atcc 25745 At
           1.90 A Resolution
          Length = 178

 Score = 37.6 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
             +L+  +       + + GGA +    + + L+D+ IL    I +G G
Sbjct: 98  PVELVKRIQKEKGKDVWIVGGAKIIDPLVQANLIDTYILTTVPIFLGSG 146


>gi|289548738|ref|YP_003473726.1| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Thermocrinis albus
           DSM 14484]
 gi|289182355|gb|ADC89599.1| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Thermocrinis albus
           DSM 14484]
          Length = 208

 Score = 37.6 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 8/103 (7%)

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND---DPVLALAFRKKNI 265
            R+ GL+   P   I+  + +  LD  ++      P+I + + +    P+L  A      
Sbjct: 30  VRVIGLERIPPDACIVASNHRSHLDPPVLNAVFPQPLIFLAKEELFRIPLLGKALPHMGA 89

Query: 266 NIIYCDCRDLKKLLTI--LVGRGVTSLLV--EGGAAVAHSFIN 304
             +     DL  L     L+ RG   + V  EG  A+  SF+ 
Sbjct: 90  LPVRRGSGDLDVLQKALDLLHRGCK-VCVFPEGTRAMPGSFLK 131


>gi|328857120|gb|EGG06238.1| hypothetical protein MELLADRAFT_77900 [Melampsora larici-populina
           98AG31]
          Length = 1150

 Score = 37.6 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 37/119 (31%), Gaps = 5/119 (4%)

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
               P    S      LS  G++  R + SEG  +  +    +    S +      ++  
Sbjct: 549 ASYIPSPAFSPSISTALSDAGLLTPRPLGSEGYPYNQSQSHHRPPLPSDLAELQLANKFG 608

Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAIL-----VGIGTVLADDPELTCRLNGLQE 216
                        G       HLL+    AI+     VG GT L  + +LT     L  
Sbjct: 609 RHLTVNSTWENSMGCDKSKDGHLLQNDISAIMMKRACVGYGTNLLRNQQLTSDSPELSG 667


>gi|227538660|ref|ZP_03968709.1| hypothetical protein HMPREF0765_2904 [Sphingobacterium
          spiritivorum ATCC 33300]
 gi|227241579|gb|EEI91594.1| hypothetical protein HMPREF0765_2904 [Sphingobacterium
          spiritivorum ATCC 33300]
          Length = 54

 Score = 37.6 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 2/34 (5%)

Query: 7  DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI 40
          D  +M AAL  ++           +  +IV  G 
Sbjct: 15 DEFYMKAALTLAKKA--YEEDEVPIGAVIVSQGK 46


>gi|316967943|gb|EFV52296.1| deoxycytidylate deaminase [Trichinella spiralis]
          Length = 155

 Score = 37.6 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 30/101 (29%), Gaps = 28/101 (27%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV--------------------- 46
            FM  AL  S+               IV  D  +IG G                      
Sbjct: 17  YFMGVALLSSKRSK---DPIMQEGACIVNSDNHIIGVGYNGMPAGCSDDRMPWADQANSI 73

Query: 47  --TAYGGCPHAEVQAL-EEAGEEARGATAYVTLEPCSHYGR 84
             T +    HA + A+  +    A+G   Y T  PCSH   
Sbjct: 74  LETKHPYICHAALNAVVNKISNSAKGCCLYTTHLPCSHCAG 114


>gi|237721764|ref|ZP_04552245.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|293373340|ref|ZP_06619698.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
 gi|229448633|gb|EEO54424.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|292631736|gb|EFF50356.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
          Length = 135

 Score = 37.6 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 8/97 (8%)

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
            +LD  +    + +P+    +N +       R++    +  D   +          G+  
Sbjct: 10  TTLDGYLFDRTVSSPLW---DNPNKYGLTKIRERATQTLGPDVSFISLTQWKKKNEGIY- 65

Query: 290 LLVEGGA---AVAHSFINSRLVDSIILYRSQIVIGEG 323
             +E      +V  S     LVD IIL+ +  + G+G
Sbjct: 66  -FIEAAPDTISVISSMFRYWLVDEIILFVAPYIQGDG 101


>gi|237715506|ref|ZP_04545987.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|294646525|ref|ZP_06724162.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|294807554|ref|ZP_06766351.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229444215|gb|EEO50006.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|292638144|gb|EFF56525.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|294445255|gb|EFG13925.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 135

 Score = 37.6 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 8/97 (8%)

Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
            +LD  +    + +P+    +N +       R++    +  D   +          G+  
Sbjct: 10  TTLDGYLFDRTVSSPLW---DNPNKYGLTKIRERATQTLGPDVSFISLTQWKKKNEGIY- 65

Query: 290 LLVEGGA---AVAHSFINSRLVDSIILYRSQIVIGEG 323
             +E      +V  S     LVD IIL+ +  + G+G
Sbjct: 66  -FIEAAPDTISVISSMFRYWLVDEIILFVAPYIQGDG 101


>gi|160898549|ref|YP_001564131.1| deaminase-reductase domain-containing protein [Delftia acidovorans
           SPH-1]
 gi|160364133|gb|ABX35746.1| bifunctional deaminase-reductase domain protein [Delftia
           acidovorans SPH-1]
          Length = 207

 Score = 37.6 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
             +L+  L   G +S  ++GGA V  +F+ +  V  + + R  ++IG G
Sbjct: 113 PAQLVAELRAEGWSSAYIDGGA-VIRAFLAAGEVGEMTITRVPVLIGAG 160


>gi|438196|emb|CAA79799.1| hypothetical DNA-binding protein [Amycolatopsis lactamdurans]
          Length = 214

 Score = 37.6 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 8/84 (9%)

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT--ILVGRGVTSLLVEGGAAVA 299
             PV ++T ++ P   L+         +    DL  +L       +G   + + GGA   
Sbjct: 104 HTPVFVLTHHERPSFTLSD-----TTFHFVGGDLAAVLERAKEAAQG-KDVRLGGGATTI 157

Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323
            +F+++ LVD++ +  +Q  +G G
Sbjct: 158 RAFLDADLVDTLHVAVAQPELGAG 181


>gi|269956586|ref|YP_003326375.1| bifunctional deaminase-reductase domain-containing protein
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269305267|gb|ACZ30817.1| bifunctional deaminase-reductase domain protein [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 180

 Score = 37.6 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           G +++   +   LVD + L  + +++GEG   S             V    F S+  L Y
Sbjct: 119 GGSISRQCLLLGLVDELHLDVAPVLLGEG--ISLFAGLGQRIELERVETSAFASETHLRY 176

Query: 355 I 355
            
Sbjct: 177 R 177


>gi|77917675|ref|YP_355490.1| carbon-monoxide dehydrogenase, catalytic subunit [Pelobacter
           carbinolicus DSM 2380]
 gi|77543758|gb|ABA87320.1| carbon-monoxide dehydrogenase, catalytic subunit [Pelobacter
           carbinolicus DSM 2380]
          Length = 645

 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 2/93 (2%)

Query: 34  LIVKDGIVIGRGVTAYGGCPHAEVQ--ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQF 91
           LI +D +V+G G  A        +   A ++AG   +     + + P  H G    C++ 
Sbjct: 476 LIKRDILVLGTGCWAIAAAKAGLMNLDAQQQAGPGLKAVCEQLGIPPVLHMGSCVDCSRM 535

Query: 92  IIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           ++  G     + VD   + V G   +W ++K +
Sbjct: 536 LVLTGALADHLGVDTAALPVVGSAPEWTTEKAV 568


>gi|13472371|ref|NP_103938.1| hypothetical protein mlr2644 [Mesorhizobium loti MAFF303099]
 gi|14023117|dbj|BAB49724.1| mlr2644 [Mesorhizobium loti MAFF303099]
          Length = 189

 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 3/84 (3%)

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
               L  L  +    + + G   +        L+D        I++G G   +  E    
Sbjct: 104 PAAKLRELKQQPGNHMTILGSGNLVAQLAEENLIDEYQFVIVPIMLGAGR--TMFEGIGN 161

Query: 335 EKNFMCVRRDYFGS-DVCLEYIGK 357
             N    R   FG+ +V L Y  K
Sbjct: 162 RLNVKLARSQAFGNGNVFLRYEQK 185


>gi|320012745|gb|ADW07595.1| bifunctional deaminase-reductase domain protein [Streptomyces
           flavogriseus ATCC 33331]
          Length = 214

 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GG      F+ + LVD++ +  S + +G G
Sbjct: 152 GGVTTIRQFLEADLVDTLHVAVSPVELGSG 181


>gi|56566286|gb|AAV98473.1| FCY1 [Cryptococcus neoformans var. neoformans]
          Length = 225

 Score = 37.6 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 35/117 (29%), Gaps = 29/117 (24%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGR-----GVTAYGGCPHAEVQALE 61
            +M  A   + +  G           IV      ++       G+T      H E+ A+ 
Sbjct: 39  HWMRVA-NEAVYADGHPCPQAPFGTAIVNTTSDELVCVTSNKVGITGNP-AMHGEISAIT 96

Query: 62  EAGE--EARGAT------------AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
              E   A+G T             Y   EPC      P CA  I   G + V+   
Sbjct: 97  YCTEVLTAKGWTSQEILAGWKDFSLYTNGEPC------PMCASAIRWAGFKEVIYGT 147


>gi|297199206|ref|ZP_06916603.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sviceus ATCC 29083]
 gi|197715068|gb|EDY59102.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sviceus ATCC 29083]
          Length = 188

 Score = 37.6 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 3/86 (3%)

Query: 259 AFRKKNINIIYCDCRDLKKLLTIL--VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
           + R +          D  +LL  +    RG   + + GG     +F     +D + L   
Sbjct: 76  SHRPEGTPDHVTTDSDPVRLLEKIRAANRG-GDVHLIGGPRTIATFHALGALDRLELIVL 134

Query: 317 QIVIGEGGIPSPLEEGYLEKNFMCVR 342
            ++ G G   +P         F   R
Sbjct: 135 PMLFGGGTQLTPALSPETGLTFQSQR 160


>gi|239825834|ref|YP_002948458.1| bifunctional phosphoribosylaminoimidazolecarboxamide
           formyltransferase/IMP cyclohydrolase [Geobacillus sp.
           WCH70]
 gi|239806127|gb|ACS23192.1| phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP
           cyclohydrolase [Geobacillus sp. WCH70]
          Length = 512

 Score = 37.6 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 13  AALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATA 72
            ALRF+   V    +N   A ++ KDG+ IG G         A   A+E+AGE+A+GA  
Sbjct: 401 EALRFAWKVVKHVKSN---AIVLAKDGMTIGIGAGQMN-RVGAAKIAIEQAGEKAKGAVL 456


>gi|325963130|ref|YP_004241036.1| dihydrofolate reductase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469217|gb|ADX72902.1| dihydrofolate reductase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 211

 Score = 37.6 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLEYI 355
           ++  S + + LVD   L    ++ G  G    + +GY +     V    F G    LEYI
Sbjct: 140 SLCRSLLTAGLVDRFRLVVFPVITGRTGRER-IWDGYPDVALEMVESRTFDGRLQLLEYI 198

Query: 356 G 356
            
Sbjct: 199 P 199


>gi|289641909|ref|ZP_06474065.1| hypothetical protein FsymDgDRAFT_1323 [Frankia symbiont of Datisca
           glomerata]
 gi|289508318|gb|EFD29261.1| hypothetical protein FsymDgDRAFT_1323 [Frankia symbiont of Datisca
           glomerata]
          Length = 191

 Score = 37.6 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 10/113 (8%)

Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC- 209
           H+      S D    +    S  + G   +    LLR  +D +LVG GT +A+D      
Sbjct: 70  HVRSNFVSSIDGATEV-DGRSGALGGSADRRVFRLLRWLADVVLVGAGTAVAEDYGPVVV 128

Query: 210 -------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
                  R+   Q   P   ++    +L   +++   A + P+++  E   P 
Sbjct: 129 PPDRRERRVAAGQNAVPPIAVVSAALRLEPSARLF-AAPVRPLVLTCEAAPPA 180


>gi|182434219|ref|YP_001821938.1| hypothetical protein SGR_426 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326774731|ref|ZP_08233996.1| bifunctional deaminase-reductase domain protein [Streptomyces cf.
           griseus XylebKG-1]
 gi|178462735|dbj|BAG17255.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326655064|gb|EGE39910.1| bifunctional deaminase-reductase domain protein [Streptomyces cf.
           griseus XylebKG-1]
          Length = 193

 Score = 37.6 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 40/120 (33%), Gaps = 19/120 (15%)

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI-----LVGRGV 287
           D+ + +   L   ++ T  +DP         +  + + D  D+   L       L   G 
Sbjct: 75  DAWVTRMRSLPATVVSTTLEDP-----LDWPDATVAHGDAVDVVARLKEASDVPLRSHGS 129

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
            S        +  + + + LVD + +    ++ G  G   P+  G  + +   +      
Sbjct: 130 LS--------MNRALMAAGLVDRVQVTVFPVITGRTGTE-PVLRGAADFDLELIESRTLD 180


>gi|289766920|ref|ZP_06526298.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces lividans TK24]
 gi|289697119|gb|EFD64548.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces lividans TK24]
          Length = 212

 Score = 37.6 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 10/76 (13%)

Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG- 321
           +N  ++  D  D  + L    G  +  +   G   +A + +   LVD   L    ++IG 
Sbjct: 114 QNSTLLEGDTVDAVRRLKASDGGNLNVV---GSGDLAQTLMRHGLVDEYRLTIHPVIIGT 170

Query: 322 ------EGGIPSPLEE 331
                 +G IP+ LE 
Sbjct: 171 GKRLFADGAIPTALEP 186


>gi|220919133|ref|YP_002494437.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956987|gb|ACL67371.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 204

 Score = 37.6 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 2/50 (4%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
           G A +  + +   LVD   L+   +++G G        G        V  
Sbjct: 132 GSAELLQTLLQHDLVDEYRLFVFPVLLGSG--KRLFAGGTAPAALRRVET 179


>gi|152967578|ref|YP_001363362.1| bifunctional deaminase-reductase domain protein [Kineococcus
           radiotolerans SRS30216]
 gi|151362095|gb|ABS05098.1| bifunctional deaminase-reductase domain protein [Kineococcus
           radiotolerans SRS30216]
          Length = 208

 Score = 37.6 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
           G A +A S  ++ LVD   L    +++G  G     +    E+    +    +G+ V
Sbjct: 144 GSATLARSLADAGLVDRYHLLVFPVLLGA-GKRLFSDTDKDEQRLAVLEAQTYGNGV 199


>gi|256783038|ref|ZP_05521469.1| secreted protein [Streptomyces lividans TK24]
          Length = 201

 Score = 37.6 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 10/76 (13%)

Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG- 321
           +N  ++  D  D  + L    G  +  +   G   +A + +   LVD   L    ++IG 
Sbjct: 103 QNSTLLEGDTVDAVRRLKASDGGNLNVV---GSGDLAQTLMRHGLVDEYRLTIHPVIIGT 159

Query: 322 ------EGGIPSPLEE 331
                 +G IP+ LE 
Sbjct: 160 GKRLFADGAIPTALEP 175


>gi|325068957|ref|ZP_08127630.1| bifunctional deaminase-reductase domain protein [Actinomyces oris
           K20]
          Length = 176

 Score = 37.6 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 25/49 (51%)

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           L++L+  L G     + + GGA +    I+S ++D  ++     ++G G
Sbjct: 96  LEELIKKLKGVEGKDIWICGGADLVQQAISSDVIDEYLISIIPTILGNG 144


>gi|194221887|ref|XP_001490247.2| PREDICTED: cytidine and dCMP deaminase domain containing 1 [Equus
           caballus]
          Length = 514

 Score = 37.6 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 8/77 (10%)

Query: 32  ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQF 91
             ++VK+  ++G          HA   AL + G   +    Y + +PCS       C + 
Sbjct: 89  GLVVVKNTKIVGL--HCSSEDLHAGKIALVKHGSRLKNCDLYFSRKPCS------ACLKM 140

Query: 92  IIECGIRRVVVCVDDPD 108
           I+  G+ R+     DP+
Sbjct: 141 IVNAGVNRISYWPADPE 157


>gi|118470530|ref|YP_887878.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Mycobacterium smegmatis str. MC2 155]
 gi|118171817|gb|ABK72713.1| cytidine/deoxycytidylate deaminase, zinc-binding region
           [Mycobacterium smegmatis str. MC2 155]
          Length = 159

 Score = 37.6 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 27/118 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGG 51
           M +S  D +++   +  +R  +           ++V        G T             
Sbjct: 1   MAISDADLKYLRRCVDLAREALDDGDE--PFGSVLVDH-----TGTTLFEDRNRVKDGDA 53

Query: 52  CPHAEV----QALEEAGEEARG-ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
             H E      A      + R  AT Y + E C     +          G+ R+V   
Sbjct: 54  TAHPEFAIARWAARHLTPDRRARATVYTSGEHCPMCAAAHAWV------GLGRIVYAT 105


>gi|294814942|ref|ZP_06773585.1| Dihydrofolate reductase [Streptomyces clavuligerus ATCC 27064]
 gi|294327541|gb|EFG09184.1| Dihydrofolate reductase [Streptomyces clavuligerus ATCC 27064]
          Length = 241

 Score = 37.6 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 4/85 (4%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           DL   +  L       + + GGA +A    +   VD ++L    +V+G  G+P   + G+
Sbjct: 160 DLVARVAELKREDGLGIYLCGGANLAGQLRDE--VDELVLKTYPVVLGS-GMPM-FDSGF 215

Query: 334 LEKNFMCVRRDYFGSDVCLEYIGKN 358
              +F       F + V +    + 
Sbjct: 216 QVDDFALDSLRAFDNGVVVRTYRRE 240


>gi|288574413|ref|ZP_06392770.1| CMP/dCMP deaminase zinc-binding [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288570154|gb|EFC91711.1| CMP/dCMP deaminase zinc-binding [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 161

 Score = 37.6 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 31/105 (29%), Gaps = 34/105 (32%)

Query: 32  ACLIVKDGIVIGRGVTAYG-GCP---------------------------HAEVQA-LEE 62
             ++VKD ++I  G      G P                           HAE  A +  
Sbjct: 32  GAVLVKDHVIISTGYNGACRGEPNCVDVGVCHREALKIPKGERYELCVAVHAEQNAIING 91

Query: 63  AGEEARGATAY---VTLEPCSHYGRSPP--CAQFIIECGIRRVVV 102
             E+  G T Y   V     +     P   C + I    I RVV 
Sbjct: 92  NPEKMVGGTIYIAGVNASDGTLANGEPCMLCRRMIKNARIERVVY 136


>gi|260463958|ref|ZP_05812154.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
           opportunistum WSM2075]
 gi|259030333|gb|EEW31613.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
           opportunistum WSM2075]
          Length = 176

 Score = 37.6 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-LE 353
           G  +A S  +  L+D   LY   +V+G G    P   G        V  D    DV  L 
Sbjct: 117 GPNLARSVTDLGLIDEYQLYFHPVVLGHGK---PFFAG-PRPPLRFVASDLIDDDVIRLT 172

Query: 354 YIG 356
           Y+ 
Sbjct: 173 YVP 175


>gi|330468244|ref|YP_004405987.1| bifunctional deaminase-reductase domain-containing protein
           [Verrucosispora maris AB-18-032]
 gi|328811215|gb|AEB45387.1| bifunctional deaminase-reductase domain-containing protein
           [Verrucosispora maris AB-18-032]
          Length = 187

 Score = 37.6 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 16/126 (12%)

Query: 226 PHFKLSLDS-KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILV 283
             + +  D+  +       PV ++T + +           +  + CD  + ++  L    
Sbjct: 61  RGWDMFPDAGNVYGGDWTGPVFVLTHHPEDAKP----ADRVTFLNCDVAEAVRIALAAAD 116

Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
           GR V  +L      +    +   L+D I L+ + +++G+G         Y       +  
Sbjct: 117 GRNV-EVLS---PDIGRQLLERGLIDEIDLHIAPVLLGDG------IRLYEHLGGRPIYL 166

Query: 344 DYFGSD 349
              G+D
Sbjct: 167 HRVGAD 172


>gi|58265894|ref|XP_570103.1| cytosine deaminase [Cryptococcus neoformans var. neoformans JEC21]
 gi|134110332|ref|XP_775993.1| hypothetical protein CNBD0430 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258661|gb|EAL21346.1| hypothetical protein CNBD0430 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|56566313|gb|AAV98489.1| FCY1 [Cryptococcus neoformans var. neoformans]
 gi|57226336|gb|AAW42796.1| cytosine deaminase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 225

 Score = 37.6 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 35/117 (29%), Gaps = 29/117 (24%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGR-----GVTAYGGCPHAEVQALE 61
            +M  A   + +  G           IV      ++       G+T      H E+ A+ 
Sbjct: 39  HWMRVA-NEAVYADGHPCPQAPFGTAIVNTTSDELVCVTSNKVGITGNP-AMHGEISAIT 96

Query: 62  EAGE--EARGAT------------AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
              E   A+G T             Y   EPC      P CA  I   G + V+   
Sbjct: 97  YCTEVLTAKGWTSQEILAGWKDFSLYTNGEPC------PMCASAIRWAGFKEVIYGT 147


>gi|298482048|ref|ZP_07000237.1| conserved hypothetical protein [Bacteroides sp. D22]
 gi|330997062|ref|ZP_08320924.1| hypothetical protein HMPREF9442_02016 [Paraprevotella xylaniphila
           YIT 11841]
 gi|298271912|gb|EFI13484.1| conserved hypothetical protein [Bacteroides sp. D22]
 gi|329571560|gb|EGG53242.1| hypothetical protein HMPREF9442_02016 [Paraprevotella xylaniphila
           YIT 11841]
          Length = 163

 Score = 37.6 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           GA      +++ L D I++    +++G G     LE G  +     VR      D  +  
Sbjct: 99  GAETGALLLDNGLADEIVVITVPVLVGGGEKA--LECGLNDDRTWVVRSSKVLEDGKIRT 156

Query: 355 IGKNLC 360
           +   +C
Sbjct: 157 VYGRVC 162


>gi|114765713|ref|ZP_01444811.1| putative deaminase [Pelagibaca bermudensis HTCC2601]
 gi|114541930|gb|EAU44965.1| putative deaminase [Roseovarius sp. HTCC2601]
          Length = 152

 Score = 37.6 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 15/107 (14%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA-----G 64
           A+  +          P     +++   V+               HAE+ A+E A      
Sbjct: 13  AVIAAALARFSPGEGPVFTAAVLRGDEVLALSANEVSERCDASRHAEIVAIETASRKLGS 72

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
            +  G T   +++PC        C   +   GI R+V  +       
Sbjct: 73  TKLDGCTLIASMQPC------EMCLAAMRWAGIDRLVFAMTQELAPT 113


>gi|164658922|ref|XP_001730586.1| hypothetical protein MGL_2382 [Malassezia globosa CBS 7966]
 gi|159104482|gb|EDP43372.1| hypothetical protein MGL_2382 [Malassezia globosa CBS 7966]
          Length = 492

 Score = 37.6 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 42/125 (33%), Gaps = 36/125 (28%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGI----------------VIGRGVTAY-GG 51
           R +  AL+ +  H     T  SV C+I  +G                 ++  G +    G
Sbjct: 249 RMLLLALQEAD-HCDSVPTAFSVGCVIAVNGTELCRELPEVDEPMEPLLLTTGYSRELPG 307

Query: 52  CPHAEVQA----------------LEEAGEE-ARGATAYVTLEPCSHY-GRSPPCAQFII 93
             HAE  A                + EA +        Y T+EPCS     + PCAQ I 
Sbjct: 308 NTHAEECAMEKIARHCARTPHVYNIAEARQREPLELVLYTTMEPCSERLSGNLPCAQRIQ 367

Query: 94  ECGIR 98
               +
Sbjct: 368 AFNQK 372


>gi|329965304|ref|ZP_08302231.1| conserved domain protein [Bacteroides fluxus YIT 12057]
 gi|328522854|gb|EGF49960.1| conserved domain protein [Bacteroides fluxus YIT 12057]
          Length = 128

 Score = 37.6 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-LEYI 355
            +        LVD + LY S    G  GIP       +  ++       +  ++  L Y 
Sbjct: 63  ELTWEVFEQNLVDELYLYIS-SYTGGSGIPIFSHNIKMSNHWKLEEAKVYNEEIVRLHYS 121

Query: 356 GKNL 359
             ++
Sbjct: 122 RVDI 125


>gi|171320299|ref|ZP_02909352.1| phospholipase D/Transphosphatidylase [Burkholderia ambifaria MEX-5]
 gi|171094446|gb|EDT39507.1| phospholipase D/Transphosphatidylase [Burkholderia ambifaria MEX-5]
          Length = 516

 Score = 37.6 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 60/224 (26%), Gaps = 26/224 (11%)

Query: 90  QFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
           + +I      +V   +  D       +       ++V   + ++       +        
Sbjct: 170 KAMIADNQAAIVGGRNIGDEYFGASSMLEFGDLDVVVHGPVVNDISTEFDTFWNSPYAFS 229

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT--------VL 201
            +  +    + D +          +        V   R + D I+ G GT        VL
Sbjct: 230 VNALVGHDAAPDGLDRERERLRDYLRAMEDNPYVLESRQRLDQIVHGQGTELSWGRATVL 289

Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT-------ENDDP 254
            DDP    R              D    L    + +       ++IV+       +  + 
Sbjct: 290 YDDPAKIARAPQ-----------DSEGHLMPQLRALALRPEHELLIVSPYFVPGKDMVER 338

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
           + AL  R   + I+                R     LVE G  +
Sbjct: 339 LRALTARGVRVTILTNSLASTDVAAVHAGYRRYRRELVEAGVRL 382


>gi|156402718|ref|XP_001639737.1| predicted protein [Nematostella vectensis]
 gi|156226867|gb|EDO47674.1| predicted protein [Nematostella vectensis]
          Length = 452

 Score = 37.6 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 39/116 (33%), Gaps = 30/116 (25%)

Query: 31  VACLIVKDGIVIGRGVTAYGGCP----------------HAEVQA--------LEEAGEE 66
           V C+++ +  VI  G + +                    HA   A        + +A   
Sbjct: 308 VGCVLMYENEVISIGWSGFPAKATYGEFPRSACKKPYIIHAAENAVLTKNQQIIRKADCL 367

Query: 67  ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
              A  Y++  PC        C   ++E G++ V++   + D        + + QK
Sbjct: 368 TSSAQLYISKIPCRE------CVHMLVEVGVKHVILPGSEHDDDAKDDVFKEMLQK 417


>gi|108800303|ref|YP_640500.1| DNA-binding protein [Mycobacterium sp. MCS]
 gi|119869431|ref|YP_939383.1| DNA-binding protein [Mycobacterium sp. KMS]
 gi|126435926|ref|YP_001071617.1| DNA-binding protein [Mycobacterium sp. JLS]
 gi|108770722|gb|ABG09444.1| DNA-binding protein [Mycobacterium sp. MCS]
 gi|119695520|gb|ABL92593.1| DNA-binding protein [Mycobacterium sp. KMS]
 gi|126235726|gb|ABN99126.1| DNA-binding protein [Mycobacterium sp. JLS]
          Length = 216

 Score = 37.6 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GGA V   F+++ LVD++ +  S + IG G
Sbjct: 163 GGATVIRQFLDAGLVDTLHVAVSDVRIGRG 192


>gi|288921824|ref|ZP_06416041.1| bifunctional deaminase-reductase domain protein [Frankia sp. EUN1f]
 gi|288346848|gb|EFC81160.1| bifunctional deaminase-reductase domain protein [Frankia sp. EUN1f]
          Length = 219

 Score = 37.6 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 3/99 (3%)

Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
                 PV ++T +  P + +        I     + L           V    + GG  
Sbjct: 103 NPPFHTPVFVLTHHPRPSIEMEGGTVFHFIDAAPKQALDLAREAAGDLDVR---IGGGPT 159

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
           +   F+ + L+DS+ +    I++G G      +EG  E+
Sbjct: 160 IVRDFLAADLIDSMHVALVPILLGRGTRLWDGQEGLEER 198


>gi|255039162|ref|YP_003089783.1| bifunctional deaminase-reductase domain-containing protein
           [Dyadobacter fermentans DSM 18053]
 gi|254951918|gb|ACT96618.1| bifunctional deaminase-reductase domain protein [Dyadobacter
           fermentans DSM 18053]
          Length = 188

 Score = 37.6 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
           G   +A S +N  L+D   L    I++G+G   S  +          V     GS V  
Sbjct: 126 GSPGLAKSLMNLGLIDEYKLTLHPIILGKG--ISLFDSNTEMSKLKLVESKTLGSGVVT 182


>gi|256840421|ref|ZP_05545929.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737693|gb|EEU51019.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 163

 Score = 37.2 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           GA      +++ L D I++    +++G G     LE G  +     VR      D  +  
Sbjct: 99  GAETGALLLDNGLADEIVVITVPVLVGGGEKA--LECGLNDGRTWIVRSSKVLEDGKIRT 156

Query: 355 IGKNLC 360
           +   +C
Sbjct: 157 VYGRVC 162


>gi|262194682|ref|YP_003265891.1| bifunctional deaminase-reductase domain protein [Haliangium
           ochraceum DSM 14365]
 gi|262078029|gb|ACY13998.1| bifunctional deaminase-reductase domain protein [Haliangium
           ochraceum DSM 14365]
          Length = 209

 Score = 37.2 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 2/79 (2%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           D    +  L       L V G   +A S + + +VD + L    +V+G G     LE G 
Sbjct: 111 DPVARIDELKAAHEGELQVHGSPILARSLLKAGVVDELNLMMFPVVLGGG--KRLLEPGA 168

Query: 334 LEKNFMCVRRDYFGSDVCL 352
           +      + +    + + L
Sbjct: 169 VAAGMKLISQASTDNGIVL 187


>gi|239944540|ref|ZP_04696477.1| bifunctional deaminase-reductase domain protein [Streptomyces
           roseosporus NRRL 15998]
 gi|239991000|ref|ZP_04711664.1| bifunctional deaminase-reductase domain protein [Streptomyces
           roseosporus NRRL 11379]
 gi|291448003|ref|ZP_06587393.1| riboflavin biosynthesis protein RibD [Streptomyces roseosporus NRRL
           15998]
 gi|291350950|gb|EFE77854.1| riboflavin biosynthesis protein RibD [Streptomyces roseosporus NRRL
           15998]
          Length = 201

 Score = 37.2 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLEYI 355
           ++  S + + LVD   +    ++ G  G    + +GY +     +    F G    +EY 
Sbjct: 130 SLCRSLLRAGLVDRFRVVMFPVITGATGSER-IYDGYPDVALDMIGHRTFDGRTQLVEYR 188

Query: 356 GK 357
            +
Sbjct: 189 PR 190


>gi|85000845|ref|XP_955141.1| deaminase [Theileria annulata strain Ankara]
 gi|65303287|emb|CAI75665.1| deaminase, putative [Theileria annulata]
          Length = 297

 Score = 37.2 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 24/106 (22%)

Query: 33  CLIVKDGIVIGRGVTAYGGC--PHAEVQA---LEEAGEEAR-------------GATAYV 74
           C+I     VI             HA + A   + EA ++               G   Y+
Sbjct: 180 CIITFKDKVISTAFDKRDVNILKHASILAVGKIAEAKKKRETQKMKDFPDYLCTGCDVYL 239

Query: 75  TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           + EPC   G        ++   I +V+  + +  +   G      +
Sbjct: 240 SHEPCCMCG------MALLHSRISKVIYGIKNQKLGCFGSVWNLHN 279


>gi|224110294|ref|XP_002315474.1| predicted protein [Populus trichocarpa]
 gi|118483375|gb|ABK93588.1| unknown [Populus trichocarpa]
 gi|222864514|gb|EEF01645.1| predicted protein [Populus trichocarpa]
          Length = 186

 Score = 37.2 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 38/126 (30%), Gaps = 36/126 (28%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVAC--------------LIVKDGIVIGRGVTA 48
           V   D +F++ A+  +   V      P                  +++K           
Sbjct: 27  VQDRDHKFLTKAVEEAYKGVDSGDGGP-FGAVVVLNDEVVVACHNMVLKH---------- 75

Query: 49  YGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                HAEV A+ EA ++           Y + EPC      P C   I    I+R+V  
Sbjct: 76  TDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPC------PMCFGAIHLSRIKRLVYG 129

Query: 104 VDDPDV 109
                 
Sbjct: 130 AKAEAA 135


>gi|58264484|ref|XP_569398.1| hypothetical protein CNC00250 [Cryptococcus neoformans var.
            neoformans JEC21]
 gi|134110197|ref|XP_776309.1| hypothetical protein CNBC6980 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50258981|gb|EAL21662.1| hypothetical protein CNBC6980 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|57225630|gb|AAW42091.1| hypothetical protein CNC00250 [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1860

 Score = 37.2 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 67   ARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
             + A  + T+EPCS      P CA  ++  G++ V + V++P   V   G++ L  
Sbjct: 1781 LKDAICFATMEPCSYRTSGGPSCALELVRAGVKAVYLGVEEPPDFVECEGVRILQD 1836


>gi|326331812|ref|ZP_08198099.1| riboflavin biosynthesis protein RibD C- domain protein
           [Nocardioidaceae bacterium Broad-1]
 gi|325950309|gb|EGD42362.1| riboflavin biosynthesis protein RibD C- domain protein
           [Nocardioidaceae bacterium Broad-1]
          Length = 202

 Score = 37.2 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
             +L+ GGA V   F+ + LVD + +    IV+G G
Sbjct: 133 QDVLIGGGATVVRDFVRAGLVDLMHVAVVPIVLGRG 168


>gi|78066555|ref|YP_369324.1| bifunctional deaminase-reductase-like [Burkholderia sp. 383]
 gi|77967300|gb|ABB08680.1| bifunctional deaminase-reductase-like protein [Burkholderia sp.
           383]
          Length = 177

 Score = 37.2 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
           L  LL  L   G   + ++GG   A   I + +VDSI L    I++G+G    PL    L
Sbjct: 94  LTTLLGRLAEDGHRHVYLDGG-MTAREGIAAGVVDSITLNWVPILLGKG---IPLFSNGL 149

Query: 335 EKNFMCVR 342
            +  + + 
Sbjct: 150 PQTLLRLD 157


>gi|302797462|ref|XP_002980492.1| hypothetical protein SELMODRAFT_420076 [Selaginella moellendorffii]
 gi|300152108|gb|EFJ18752.1| hypothetical protein SELMODRAFT_420076 [Selaginella moellendorffii]
          Length = 109

 Score = 37.2 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 7/50 (14%)

Query: 54  HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           HAEV A L      A G   YVT+ PC+       CA+ II+ GI  V+ 
Sbjct: 28  HAEVNAILNRNHASASGQRLYVTMFPCNE------CAKVIIQAGIAEVIF 71


>gi|255513757|gb|EET90022.1| CMP/dCMP deaminase zinc-binding [Candidatus Micrarchaeum
          acidiphilum ARMAN-2]
          Length = 188

 Score = 37.2 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 8/52 (15%)

Query: 8  ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
           +F+   +  +R      S   +   +IV +G V+G G          EV A
Sbjct: 16 EKFIPECVSLARKSDCNES---NYGAVIVYEGKVVGSGYNHIP-----EVLA 59


>gi|239978106|ref|ZP_04700630.1| hypothetical protein SalbJ_01625 [Streptomyces albus J1074]
 gi|291450003|ref|ZP_06589393.1| dihydrofolate reductase [Streptomyces albus J1074]
 gi|291352952|gb|EFE79854.1| dihydrofolate reductase [Streptomyces albus J1074]
          Length = 214

 Score = 37.2 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 3/82 (3%)

Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
             PV+++T +    L          +       L + + +  G  V    + GG      
Sbjct: 100 RTPVVVLTHHRRDPLHFDNGTSFHFLDATPEEALARAVELAGGLDVR---IGGGPTTIRQ 156

Query: 302 FINSRLVDSIILYRSQIVIGEG 323
           F+ + LVD + L    + +G G
Sbjct: 157 FLAADLVDFLHLVTVPLTLGAG 178


>gi|114320516|ref|YP_742199.1| pyrimidine reductase, riboflavin biosynthesis, RibD
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226910|gb|ABI56709.1| pyrimidine reductase, riboflavin biosynthesis, RibD
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 285

 Score = 37.2 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 4/108 (3%)

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
           R +      P  ++L       L   + +      V  VT    P       ++   +I 
Sbjct: 115 RQDQGLPGQPDVVVLSATLDFPLPELLFRQGRRVWVATVT-GASPRARDRLERQGATVID 173

Query: 270 C---DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
           C      D  +L   L   G        G  V H  + + +++S+ L 
Sbjct: 174 CGAGPRVDAARLTRHLAAEGYRRAYSVTGPWVMHELLRAGVLESLFLT 221


>gi|297157114|gb|ADI06826.1| cytidine/deoxycytidine deaminase [Streptomyces bingchenggensis
           BCW-1]
          Length = 143

 Score = 37.2 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 18/110 (16%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----CPHAE-- 56
           ++ D   +  A+  +   V  T  +     L+   DG ++               H E  
Sbjct: 3   TTADETLLRRAIGIAARAV--TLGDAPYGSLLAGPDGTILAEAHNTVRRDNDITAHPELK 60

Query: 57  --VQALEEAGEE-ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
               A  E   + A   T Y + +PC   G        I+  G+ RVV  
Sbjct: 61  LARWAARELDPDTAARTTLYTSCQPCGMCGGG------IVRSGVGRVVYA 104


>gi|284031852|ref|YP_003381783.1| bifunctional deaminase-reductase domain-containing protein
           [Kribbella flavida DSM 17836]
 gi|283811145|gb|ADB32984.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
           DSM 17836]
          Length = 190

 Score = 37.2 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 16/29 (55%)

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GA VA   + + L+D + ++    ++G G
Sbjct: 130 GADVARHLLRAGLLDEVWIHIVPRLLGAG 158


>gi|60681224|ref|YP_211368.1| hypothetical protein BF1732 [Bacteroides fragilis NCTC 9343]
 gi|319900057|ref|YP_004159785.1| bifunctional deaminase-reductase domain protein [Bacteroides
           helcogenes P 36-108]
 gi|60492658|emb|CAH07431.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
 gi|319415088|gb|ADV42199.1| bifunctional deaminase-reductase domain protein [Bacteroides
           helcogenes P 36-108]
          Length = 163

 Score = 37.2 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           GA      +++ L D I++    +++G G     LE G  +     VR      D  +  
Sbjct: 99  GAETGALLLDNGLADEIVVITVPVLVGGGEKA--LECGLNDGRTWVVRSSKVLEDGKIRT 156

Query: 355 IGKNLC 360
           +   +C
Sbjct: 157 VYGRVC 162


>gi|73988990|ref|XP_534116.2| PREDICTED: similar to cytidine and dCMP deaminase domain containing
           1 isoform 1 [Canis familiaris]
          Length = 515

 Score = 37.2 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 8/77 (10%)

Query: 32  ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQF 91
             ++VK+  ++G          HA   AL + G   +    Y + +PCS       C + 
Sbjct: 90  GLVVVKNTKIVGL--HCSSEDLHAGKIALIKHGARLKNCDLYFSRKPCS------ACLKM 141

Query: 92  IIECGIRRVVVCVDDPD 108
           I+  G+ R+     DP+
Sbjct: 142 IVNAGVNRISYWPADPE 158


>gi|153003383|ref|YP_001377708.1| deaminase-reductase domain-containing protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152026956|gb|ABS24724.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
           sp. Fw109-5]
          Length = 227

 Score = 37.2 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GG A    ++ + L+D + L  S +++G G
Sbjct: 160 GGVATIRQYLTAGLIDELHLAISPVLLGRG 189


>gi|237708287|ref|ZP_04538768.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229457840|gb|EEO63561.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 163

 Score = 37.2 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
           GA      +++ L D I++    +++G G     LE G  +     VR      D  +  
Sbjct: 99  GAETGALLLDNGLADEIVVITVPVLVGGGEKA--LECGLNDGRTWVVRSSKVLEDGKIRT 156

Query: 355 IGKNLC 360
           +   +C
Sbjct: 157 VYGKVC 162


>gi|223932339|ref|ZP_03624342.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptococcus suis 89/1591]
 gi|223899020|gb|EEF65378.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptococcus suis 89/1591]
          Length = 123

 Score = 37.2 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 22/43 (51%)

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            L  R    + + GGA++    + + ++D +I+     ++G+G
Sbjct: 48  ELRSREGGDIWLFGGASLVQDCLEAGVIDHLIIGIIPTILGDG 90


>gi|262200106|ref|YP_003271314.1| bifunctional deaminase-reductase domain-containing protein
           [Gordonia bronchialis DSM 43247]
 gi|262083453|gb|ACY19421.1| bifunctional deaminase-reductase domain protein [Gordonia
           bronchialis DSM 43247]
          Length = 157

 Score = 37.2 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 285 RGVTS---LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341
           RG+ S   L V G   +  + +  +LVD + L    +V+G G     L E   E     V
Sbjct: 83  RGLKSAENLYVSGSGTLVRAQLVDKLVDELHLLVYPVVLGRGAR---LFENSNEIGLRLV 139

Query: 342 RRDYFGSDVC 351
             D F + V 
Sbjct: 140 SHDVFDNGVI 149


>gi|218506804|ref|ZP_03504682.1| cytosine deaminase protein [Rhizobium etli Brasil 5]
          Length = 98

 Score = 37.2 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 11/71 (15%)

Query: 56  EVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+ A+  A      E   GA  YVTLEPC        CA  I    IRR+    +DP   
Sbjct: 1   EIAAIRLACEALGQERLAGADLYVTLEPC------TMCAAAISFARIRRLYYGAEDPKGG 54

Query: 111 VSGRGLQWLSQ 121
               G+++ +Q
Sbjct: 55  AVDNGVRFYAQ 65


>gi|189425488|ref|YP_001952665.1| CMP/dCMP deaminase zinc-binding [Geobacter lovleyi SZ]
 gi|189421747|gb|ACD96145.1| CMP/dCMP deaminase zinc-binding [Geobacter lovleyi SZ]
          Length = 194

 Score = 37.2 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 22/108 (20%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP----HAEVQALEEA 63
           + +  A   ++  +   S +P    ++V  DG  +        G      HAE     +A
Sbjct: 46  KHLRTANEAAKEAM--KSDHPPFGAVLVAPDGETV----LMKQGNVSLMDHAETVIARQA 99

Query: 64  GEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
             +         T    +EPC+    +   A       I  VV  V++
Sbjct: 100 FVKYDPDYLWKCTLVTNVEPCAMCAGNIYWAN------IGNVVYGVEE 141


>gi|54023433|ref|YP_117675.1| hypothetical protein nfa14660 [Nocardia farcinica IFM 10152]
 gi|54014941|dbj|BAD56311.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 190

 Score = 37.2 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
           ++  + + + LVD + +    ++ G  G  +P+  G  + +   +    F +
Sbjct: 127 SMNRALMAAGLVDRVQVTIFPVITGRTG-EAPIFRGAEDFDLELLDSRTFDN 177


>gi|317123798|ref|YP_004097910.1| CMP/dCMP deaminase zinc-binding protein [Intrasporangium calvum
          DSM 43043]
 gi|315587886|gb|ADU47183.1| CMP/dCMP deaminase zinc-binding protein [Intrasporangium calvum
          DSM 43043]
          Length = 160

 Score = 37.2 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 28/105 (26%), Gaps = 21/105 (20%)

Query: 1  MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV---------KDGIVIGRGVTAYGG 51
          M + + D  F+  A+  +R  +           ++V             V+        G
Sbjct: 1  MSLDARDLAFLRRAVGLARLALARGDE--PFGSVLVSSEGDVLFEDHNRVVA-----IDG 53

Query: 52 CPHAEVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQF 91
            H E      AG          AT Y + E C     +      
Sbjct: 54 TQHPEFAIARWAGSHLSPSERAVATVYTSGEHCPMCSAAHGWVGL 98


>gi|301767474|ref|XP_002919164.1| PREDICTED: cytidine and dCMP deaminase domain-containing protein
           1-like [Ailuropoda melanoleuca]
          Length = 514

 Score = 37.2 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 8/77 (10%)

Query: 32  ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQF 91
             ++VK+  ++G          HA   AL + G   +    Y + +PCS       C + 
Sbjct: 90  GLVVVKNTKIVGL--HCSSEDLHAGKIALIKHGSRLKNCDLYFSRKPCS------ACLKM 141

Query: 92  IIECGIRRVVVCVDDPD 108
           I+  G+ R+     DP+
Sbjct: 142 IVNAGVNRISYWPADPE 158


>gi|281349734|gb|EFB25318.1| hypothetical protein PANDA_007749 [Ailuropoda melanoleuca]
          Length = 471

 Score = 37.2 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 8/77 (10%)

Query: 32  ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQF 91
             ++VK+  ++G          HA   AL + G   +    Y + +PCS       C + 
Sbjct: 90  GLVVVKNTKIVGL--HCSSEDLHAGKIALIKHGSRLKNCDLYFSRKPCS------ACLKM 141

Query: 92  IIECGIRRVVVCVDDPD 108
           I+  G+ R+     DP+
Sbjct: 142 IVNAGVNRISYWPADPE 158


>gi|332186847|ref|ZP_08388589.1| ribD C-terminal domain protein [Sphingomonas sp. S17]
 gi|332013180|gb|EGI55243.1| ribD C-terminal domain protein [Sphingomonas sp. S17]
          Length = 192

 Score = 37.2 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 4/86 (4%)

Query: 242 LAPVIIVTENDDP----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
             P ++ +   D        L    ++    Y    DL + +  L       ++  GG  
Sbjct: 74  AIPKVVFSREGDEIAPDAATLPPGGESWANAYVASGDLDEEVAALKAESGGPIIAHGGVR 133

Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323
            A S I   LVD   L  + + +G G
Sbjct: 134 FARSLIAHGLVDRFALLVAPVALGRG 159


>gi|325002091|ref|ZP_08123203.1| bifunctional deaminase-reductase domain-containing protein
           [Pseudonocardia sp. P1]
          Length = 181

 Score = 37.2 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 51/161 (31%), Gaps = 29/161 (18%)

Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
            AIL+G  T  A  P  + R +  +                  +     +     ++ + 
Sbjct: 41  QAILLGRTTYEAFYPAWSARGHDEES----------------GAAFFNGSPKH--VVTST 82

Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
             DP        +N  ++        + L   V  G+    V G A +  + +   LVD+
Sbjct: 83  LADP-----LEWENSTVLGPYDPTRIQALKDSVDGGI---YVSGSATLVRAMLADGLVDT 134

Query: 311 IILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
           + L+   + +G G     L           V  + + + V 
Sbjct: 135 LNLFVYPVALGAGER---LFAAGQRIPLRLVETEAYENGVV 172


>gi|284029173|ref|YP_003379104.1| bifunctional deaminase-reductase domain-containing protein
           [Kribbella flavida DSM 17836]
 gi|283808466|gb|ADB30305.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
           DSM 17836]
          Length = 209

 Score = 37.2 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 2/89 (2%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           D+   +  L  +    L V G   +  S    +LVD IIL    +V+G+G    P     
Sbjct: 115 DVTAAVRELKAKPGGDLQVHGSGRLVRSLFAEQLVDEIILLTYPVVVGQGTRLFPAAGPD 174

Query: 334 LEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362
                  V      + + ++    +   Q
Sbjct: 175 TA--LELVESQVTANGITIQLYRPSGRPQ 201


>gi|229822451|ref|YP_002883977.1| CMP/dCMP deaminase zinc-binding [Beutenbergia cavernae DSM 12333]
 gi|229568364|gb|ACQ82215.1| CMP/dCMP deaminase zinc-binding [Beutenbergia cavernae DSM 12333]
          Length = 176

 Score = 37.2 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 16/99 (16%)

Query: 30  SVACLIVKDGIVIGRGVTAYG--GC--PHAEVQALEEAGEE------ARGATAYVTLEPC 79
            +  ++     VIGR  T     G    HA++ A+  A E       A   T  V LEPC
Sbjct: 34  PIGAVVFAGEDVIGRAFTQEQSLGRRIVHADLLAMIAADEHRGFDRSAGPLTLAVNLEPC 93

Query: 80  SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
                   C    I  G+ RV   +  P+        QW
Sbjct: 94  LM------CLGAAITLGVERVFYGLASPNDGGVELLAQW 126


>gi|320007628|gb|ADW02478.1| bifunctional deaminase-reductase domain protein [Streptomyces
           flavogriseus ATCC 33331]
          Length = 207

 Score = 37.2 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 2/64 (3%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
           G   +A   +   L+D + L    + +G G       +G     F        GS + + 
Sbjct: 133 GSGTLAQFLLAHGLIDEVNLIVHPVYLGRGRR--LFADGGEPTAFELTGARTTGSGIAIH 190

Query: 354 YIGK 357
               
Sbjct: 191 TYRP 194


>gi|219129188|ref|XP_002184777.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403886|gb|EEC43836.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 564

 Score = 37.2 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 24/92 (26%)

Query: 30  SVACLIVKDGIVIGRGVTAYGGCP-----------HAEVQALE------EAGEEARGATA 72
               ++  D +++ R                    HAE++ +        A E +  A  
Sbjct: 30  PFGAVLAIDSVIVARAHNQCPAAAKRGGGTGDVTRHAEMELVRLFTSKLTAEERS-NAVL 88

Query: 73  YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
           Y + EPC        CA  I   G+ +VV   
Sbjct: 89  YTSTEPC------VMCAGAIYWSGVSKVVYGC 114


>gi|116669980|ref|YP_830913.1| CMP/dCMP deaminase, zinc-binding [Arthrobacter sp. FB24]
 gi|116610089|gb|ABK02813.1| CMP/dCMP deaminase, zinc-binding protein [Arthrobacter sp. FB24]
          Length = 161

 Score = 37.2 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 42/117 (35%), Gaps = 30/117 (25%)

Query: 2   PVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG--------- 51
           P S+ D  +F+  A+  +  +V      P  A ++  DG       T + G         
Sbjct: 4   PPSAADIQKFLGQAVDLAVQNVA-AGGGPFGALVVTADG-------TRHFGVNRVTRDND 55

Query: 52  -CPHAEVQALE-----EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
              HAEV A+       A  +  GA  Y + EPC      P C    +   I RV  
Sbjct: 56  PTAHAEVVAIRTAAAESANFDLSGAVLYASCEPC------PLCLAAALWARIDRVYF 106


>gi|291613576|ref|YP_003523733.1| bifunctional deaminase-reductase domain protein [Sideroxydans
           lithotrophicus ES-1]
 gi|291583688|gb|ADE11346.1| bifunctional deaminase-reductase domain protein [Sideroxydans
           lithotrophicus ES-1]
          Length = 196

 Score = 37.2 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
            +   G   +  + I++ L+D   +    +V+GEG      E G   +N   V   
Sbjct: 123 HIW--GSGELLQTLISADLIDEFRIAVFPVVLGEG--KRLFENGVPPRNLTLVDTR 174


>gi|158341001|ref|YP_001522168.1| hypothetical protein AM1_E0085 [Acaryochloris marina MBIC11017]
 gi|158311242|gb|ABW32854.1| hypothetical protein AM1_E0085 [Acaryochloris marina MBIC11017]
          Length = 41

 Score = 37.2 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 6/33 (18%)

Query: 7  DARFMSAALRFSRWHVGLTSTNPSVACLIVKDG 39
          D  FM  A+  S+    L         ++VKDG
Sbjct: 3  DGDFMRMAIEESKKGDSLY------GAVLVKDG 29


>gi|315506336|ref|YP_004085223.1| lantibiotic dehydratase domain protein [Micromonospora sp. L5]
 gi|315412955|gb|ADU11072.1| Lantibiotic dehydratase domain protein [Micromonospora sp. L5]
          Length = 767

 Score = 37.2 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 4/107 (3%)

Query: 181 NQVHLLRAQSDA-ILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
             VH  R   +A  L+     LADD  L  R        P   +     +  L   I+ T
Sbjct: 155 ALVHRRRVYFEAWALIAYADRLADD--LAVRRWWAPALQPHLTVAGRELRAPLHPPIVLT 212

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286
            + A ++   +   P L LA R  +   ++    D+  LL   V RG
Sbjct: 213 PVEALLLGACDGRTPALELAHRLCDAGEVHSP-DDVYLLLDRWVERG 258


>gi|330469466|ref|YP_004407209.1| bifunctional deaminase-reductase domain-containing protein
           [Verrucosispora maris AB-18-032]
 gi|328812437|gb|AEB46609.1| bifunctional deaminase-reductase domain protein [Verrucosispora
           maris AB-18-032]
          Length = 188

 Score = 37.2 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 4/98 (4%)

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
           V A +    +   +     D    +  L  R    L + GG  +A   ++   VD  ++ 
Sbjct: 90  VFARSLPPSDDPAVEIVSGDPAAFVRDLKERPGGDLWLCGGGHLAGQLLSE--VDEWVIK 147

Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
            + +V G  GIP  L+  +  ++   +     G+ V +
Sbjct: 148 VNPVVAGS-GIP-LLDHSFAPQHLTLLAATPTGAGVVV 183


>gi|302526927|ref|ZP_07279269.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sp. AA4]
 gi|302435822|gb|EFL07638.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptomyces sp. AA4]
          Length = 212

 Score = 37.2 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
           GGA+     +N+ ++D + L  + +++G G     + EG     F  V  
Sbjct: 150 GGASTVRQALNAGVIDELTLDITPVLLGSGER---MFEGVESFGFEPVEV 196


>gi|322830058|gb|EFZ33221.1| deaminase, putative [Trypanosoma cruzi]
          Length = 333

 Score = 37.2 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 47/166 (28%), Gaps = 51/166 (30%)

Query: 30  SVACLIV-------------KDGI-----------VIGRGVTAYGGCPHAEVQA------ 59
            V C++V              D             +  RG  A     HA   A      
Sbjct: 165 PVGCVLVPAEASCPANAGRLDDNNPNNSGASLGNLIAARGRNATNKEHHALAHAEFVAVE 224

Query: 60  --LEEAGEEAR-------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
             L +A E+ R       G   YV +EPC        CA  ++   I++V     +P   
Sbjct: 225 ALLRDAAEKGRKPPASLAGYVLYVVVEPCIM------CAAMLLYNRIKKVYFGCGNPRFG 278

Query: 111 VSGRGLQWLSQKGI------IVDRMMESEGKIFLHAYLTRQVEKRS 150
            +G  L   + K                E    L  + +R+     
Sbjct: 279 GNGTVLAVHAAKSTSAPAYESCGGHRAEEAITLLQEFYSRENSAAP 324


>gi|229818945|ref|YP_002880471.1| bifunctional deaminase-reductase domain protein [Beutenbergia
           cavernae DSM 12333]
 gi|229564858|gb|ACQ78709.1| bifunctional deaminase-reductase domain protein [Beutenbergia
           cavernae DSM 12333]
          Length = 192

 Score = 37.2 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            +  + + + LVD + L    IV+G G
Sbjct: 121 TLTQALLAAGLVDELRLLVHPIVLGAG 147


>gi|187925693|ref|YP_001897335.1| CMP/dCMP deaminase zinc-binding [Burkholderia phytofirmans PsJN]
 gi|187716887|gb|ACD18111.1| CMP/dCMP deaminase zinc-binding [Burkholderia phytofirmans PsJN]
          Length = 544

 Score = 37.2 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 10/55 (18%)

Query: 52  CPHAEVQALEEAG----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
             HAE+ AL  AG     E RG   +VT  PC        CA+ I+  GI  V  
Sbjct: 385 AVHAEMHALLSAGATHGNEIRGGKLFVTTYPCH------SCARHIVAAGISEVYF 433


>gi|330832894|ref|YP_004401719.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptococcus suis ST3]
 gi|329307117|gb|AEB81533.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptococcus suis ST3]
          Length = 113

 Score = 37.2 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 22/43 (51%)

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            L  R    + + GGA++    + + ++D +I+     ++G+G
Sbjct: 38  ELRSREGGDIWLFGGASLVQDCLEAGVIDHLIIGIIPTILGDG 80


>gi|307544750|ref|YP_003897229.1| bifunctional deaminase-reductase domain protein [Halomonas elongata
           DSM 2581]
 gi|307216774|emb|CBV42044.1| bifunctional deaminase-reductase domain protein [Halomonas elongata
           DSM 2581]
          Length = 291

 Score = 37.2 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 16/101 (15%)

Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA-VAHSFINSRLVDSIILYRSQ 317
           A R   +++      D   L+T              G+  +  + + S LVD I ++   
Sbjct: 178 ALRDAALDVARLKREDGPALVTQ-------------GSTDLIRTLLASDLVDEIRMFIFP 224

Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
           +V+G G      ++G     F         + + +    ++
Sbjct: 225 VVLGGG--KKLFDDGARAAAFKLASHRVSPNGIVMAQYVRD 263


>gi|148262423|ref|YP_001229129.1| CMP/dCMP deaminase, zinc-binding [Geobacter uraniireducens Rf4]
 gi|146395923|gb|ABQ24556.1| CMP/dCMP deaminase, zinc-binding protein [Geobacter uraniireducens
           Rf4]
          Length = 196

 Score = 37.2 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 57/155 (36%), Gaps = 31/155 (20%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA--- 63
           M   +  SR +V   +  P  A +   DG +I  G+           HAE  AL  A   
Sbjct: 32  MRFVIELSRQNVRHGTGGPFGAAVFDSDGQLIAPGINMVVISNCSLLHAETVALACAQKA 91

Query: 64  --------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG-- 113
                   G   R    + T EPC+    + P +      G+RR+V    D D R  G  
Sbjct: 92  LGRYDIGNGGRLR-YDLFATTEPCAMCFGAIPWS------GVRRLVCGARDADARAIGFD 144

Query: 114 ------RGLQWLSQKGI-IVDRMMESEGKIFLHAY 141
                   +  L+ +GI ++  ++ +E    L  Y
Sbjct: 145 EGPKLADWVAALNARGITVLRDVLRNEAVAVLQEY 179


>gi|115384230|ref|XP_001208662.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114196354|gb|EAU38054.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 169

 Score = 37.2 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 35/108 (32%), Gaps = 24/108 (22%)

Query: 50  GGCPHAEVQALEEAG----------------EEARGATAYVTLEPCS-HYGRSPPCAQFI 92
            G  HAE   L                    E  R    YVT+EPC      + PC + I
Sbjct: 4   AGNTHAEQCCLSNYAAVHSVPDDRVAEVLPVEPGRKLIMYVTMEPCGKRLSGNTPCVERI 63

Query: 93  IE------CGIRRVVVCVDDPDVRVSGRG-LQWLSQKGIIVDRMMESE 133
           I        GI +V   V +P   V      + L+  GI    +   E
Sbjct: 64  INTRQGGRKGIHKVYFGVKEPGTFVGQSEGCRKLTAAGIEWGVVQGME 111


>gi|332668995|ref|YP_004452003.1| bifunctional deaminase-reductase domain-containing protein
           [Cellulomonas fimi ATCC 484]
 gi|332338033|gb|AEE44616.1| bifunctional deaminase-reductase domain protein [Cellulomonas fimi
           ATCC 484]
          Length = 216

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GGAA    ++ + LVD + L  + +++G G
Sbjct: 153 GGAATVRQYLRAHLVDDLHLVVAPVLLGRG 182


>gi|310792879|gb|EFQ28340.1| rhomboid family protein [Glomerella graminicola M1.001]
          Length = 138

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 179 SKNQVHLLRAQSDAILVGIGTVLADD-PELTCRLNGLQEHSPMRIIL 224
           +KN V      +  +L G+GT LA   P L  RL+G  +  P+R+++
Sbjct: 46  AKNMVERTAVGASGVLTGLGTALACMFPTLEVRLSGANQMLPLRVVV 92


>gi|241205237|ref|YP_002976333.1| bifunctional deaminase-reductase domain protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240859127|gb|ACS56794.1| bifunctional deaminase-reductase domain protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 213

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 52/179 (29%), Gaps = 33/179 (18%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT---VLADDPE 206
                    +   MIG  G       G+ ++       A   A ++G      +  D P 
Sbjct: 35  MFEWFFRTRTFRAMIGKDGGSEGVDEGYAARGM-----ANFGAFILGRNMFGPIRGDWPY 89

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
                 G    +P                       AP  I+T      + +        
Sbjct: 90  DA--WKGWWGPNP--------------------PYHAPTYILTHYPREPIVMEGGTTFHF 127

Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           +       L K  T   G+ V    + GG +    ++ + L+D +    S +V+G+G  
Sbjct: 128 VTGGVEEALDKAKTAAGGKDVK---IGGGVSTVRQYLQAGLIDELHFAVSPVVLGKGEA 183


>gi|312195999|ref|YP_004016060.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c]
 gi|311227335|gb|ADP80190.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c]
          Length = 201

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
           GGA+     + + ++D + L  + +++G G     + +G     F     
Sbjct: 140 GGASTVRQALTAGVIDELTLDIAPVLLGSGER---IFDGVESFGFEPAEV 186


>gi|256823992|ref|YP_003147952.1| cytosine/adenosine deaminase [Kytococcus sedentarius DSM 20547]
 gi|256687385|gb|ACV05187.1| cytosine/adenosine deaminase [Kytococcus sedentarius DSM 20547]
          Length = 175

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 16/87 (18%)

Query: 29  PSVACLIVKDGIVIGR-GVTAYG--GCP--HAEVQALEEA-----GEEARGATAYVTLEP 78
           P V  ++  DG ++   GV      G P  HAEV A+ +A      +   G T   T EP
Sbjct: 29  PFVGVVVNADGEMLSEFGVNQVAETGDPMAHAEVVAMRDAMTRHGLDSLTGYTLLATGEP 88

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVD 105
           C        C ++ ++ GI  + V VD
Sbjct: 89  CG------LCYRYAVDHGIDTIYVAVD 109


>gi|154250217|ref|YP_001411042.1| dihydrofolate reductase region [Fervidobacterium nodosum Rt17-B1]
 gi|154154153|gb|ABS61385.1| dihydrofolate reductase region [Fervidobacterium nodosum Rt17-B1]
          Length = 197

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 21/45 (46%)

Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
           ++ +  L   G   + V GG +V   F+N  +V  I L    +++
Sbjct: 114 REAVETLNKMGYNDICVIGGQSVFTQFLNEGIVTDIHLTIEPVIL 158


>gi|328777317|ref|XP_003249314.1| PREDICTED: tRNA-specific adenosine deaminase-like protein 3-like
           [Apis mellifera]
          Length = 389

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 8   ARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYGGCP--HAEVQALEEA 63
            R+M  A++ ++    +   N + + +IV   DG ++    +     P  HA + A++  
Sbjct: 174 ERYMKVAVQAAKL-EAVGDQNCNGSAVIVDPEDGRILAIAASKIDQHPMWHAAMLAVDLV 232

Query: 64  GEEARGATAYVTLE 77
            +      +Y T E
Sbjct: 233 AKLQEKIESYATRE 246


>gi|84497379|ref|ZP_00996201.1| putative secreted protein [Janibacter sp. HTCC2649]
 gi|84382267|gb|EAP98149.1| putative secreted protein [Janibacter sp. HTCC2649]
          Length = 182

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           G A +    +   LVD + L    IV+G G
Sbjct: 119 GSATLVRWMLEQGLVDELHLLVHPIVVGSG 148


>gi|326432789|gb|EGD78359.1| deoxycytidylate deaminase [Salpingoeca sp. ATCC 50818]
          Length = 185

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 50/162 (30%), Gaps = 43/162 (26%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPH------------- 54
            FM+ A   ++               IV  +  ++G G     G P              
Sbjct: 24  YFMAVAFLSAQRSK---DPESQFGACIVNSENKIVGIGY---NGMPRGCSDDKLPWRSQG 77

Query: 55  -------------AEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
                        AE+ A L       RG   YV   P +        A+ II+ GI+ V
Sbjct: 78  DSVLDTKYPFVCQAEMNAILNRNSSSIRGCRIYVMQFPDNE------SAKLIIQAGIKEV 131

Query: 101 VV---CVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
           V     + +    ++ R L  L++         E+E +I   
Sbjct: 132 VYVADEMHNATPYMASRRLFKLARVKCRRFEPTETEIEIDFE 173


>gi|158316784|ref|YP_001509292.1| deaminase-reductase domain-containing protein [Frankia sp. EAN1pec]
 gi|158112189|gb|ABW14386.1| bifunctional deaminase-reductase domain protein [Frankia sp.
           EAN1pec]
          Length = 198

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           +     D    +  L  +    + + GG  +A +      +D +++    + +G G
Sbjct: 108 VELVADDPVATVRELKRQDGKDVWLVGGGELAGALYQE--IDELVVKLGPLTLGTG 161


>gi|240169438|ref|ZP_04748097.1| hypothetical protein MkanA1_09004 [Mycobacterium kansasii ATCC
           12478]
          Length = 193

 Score = 36.8 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 60/198 (30%), Gaps = 33/198 (16%)

Query: 159 SQDNMIGMAGCGSVPI---TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215
           S D   G++G          G    +    L  +   ++ G  T  A    L       +
Sbjct: 12  SLDGFGGVSGGDWSGYWGKQGPELLDHRLSLYDEHQRMVFGANTYRAFAQMLAESTEESE 71

Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275
            H P    +     L               ++ T  D P         +  ++  D  D+
Sbjct: 72  VHDPW---VTRMRHLPA------------TVVSTTLDGP-----LDWPDATVVSGDAVDV 111

Query: 276 KKLLTILVG---RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
              L        R   SL      ++  + + + LVD + +    ++ G+ G   P+ +G
Sbjct: 112 VARLKQESEVPLRSHGSL------SMNRALMAAGLVDRVQVTLFPVITGQTG-DDPIYQG 164

Query: 333 YLEKNFMCVRRDYFGSDV 350
             + +   +       ++
Sbjct: 165 AADFDLELIESRTLDGNI 182


>gi|295701011|ref|YP_003608904.1| CMP/dCMP deaminase zinc-binding protein [Burkholderia sp. CCGE1002]
 gi|295440224|gb|ADG19393.1| CMP/dCMP deaminase zinc-binding protein [Burkholderia sp. CCGE1002]
          Length = 321

 Score = 36.8 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 37/108 (34%), Gaps = 10/108 (9%)

Query: 10  FMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGG-CPHAEVQALEEAGEEA 67
           ++SAA R      G T     VA LIV   G ++  G         HAE  AL   G   
Sbjct: 139 YLSAAFRLLLGKGGNTG----VAALIVSSQGQILAWGKKNSDHPLLHAETSALLMYGRRL 194

Query: 68  RGAT-AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
              T  Y TL+PC          +              DDP    SGR
Sbjct: 195 PAGTRIYSTLKPCKMC---RAAIEHFSTENDFLAYYGQDDPTAAASGR 239


>gi|134103028|ref|YP_001108689.1| dihydrofolate reductase [Saccharopolyspora erythraea NRRL 2338]
 gi|291005216|ref|ZP_06563189.1| dihydrofolate reductase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915651|emb|CAM05764.1| possible dihydrofolate reductase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 194

 Score = 36.8 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 8/95 (8%)

Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            + I+  D  ++ + L    G+G+    + GG ++A +      +D +++    + +G G
Sbjct: 107 GVEIVSSDPVEVVRELKREAGQGI---WLVGGGSLAAALRPE--IDELVIKLHPVTVGNG 161

Query: 324 GIPSPLEEGYLEKNFMCVRRDYFGSDVC-LEYIGK 357
                 E  +    F   R   F S V  L Y  +
Sbjct: 162 IR--MFEGDFDPAQFRLTRSQTFESGVLHLTYERR 194


>gi|326384750|ref|ZP_08206427.1| hypothetical protein SCNU_17500 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326196558|gb|EGD53755.1| hypothetical protein SCNU_17500 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 222

 Score = 36.8 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
            V   F+ + LVD + +  + I++G G
Sbjct: 162 TVVRDFLLAGLVDRLHVAIAPILLGRG 188


>gi|242129441|gb|ACS83776.1| deaminase reductase [Nonomuraea sp. WU8817]
          Length = 204

 Score = 36.8 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 14/101 (13%)

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
           D+   K       ++V+        L F  +N  +I  D  D   + ++    G+  +L+
Sbjct: 69  DAPFAKQLGDMRKVVVSRQ-----PLEFSWRNCELITGDLLD--AVTSLKADAGIRGILI 121

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQI-------VIGEGGIP 326
            G  +V    + + LVD + L    +       +  +G  P
Sbjct: 122 PGSISVVQQLLAAGLVDELRLLVHPVAARKGRRLFDDGDAP 162


>gi|87125219|ref|ZP_01081065.1| putative riboflavin-specific deaminase [Synechococcus sp. RS9917]
 gi|86166988|gb|EAQ68249.1| putative riboflavin-specific deaminase [Synechococcus sp. RS9917]
          Length = 222

 Score = 36.8 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 69/226 (30%), Gaps = 26/226 (11%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD----- 203
              + L +A+S D  +     G+  + G   +  +    A +D  L+G GT+ A      
Sbjct: 1   MPQVRLVLAISLDGRLAPPAGGAAQLGGAGDRRVLEEALAWADGALIGGGTLRAHHSTCL 60

Query: 204 --DPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
             +P+L   R+   +   P  +++                +   ++   ++         
Sbjct: 61  IRNPQLREQRMQQGRPAQPTALVVSQADAFPQHWPFFGQPIRRLLLSPAKDGAIPSGFDG 120

Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
           R           + L +     +            A +    +    VD + L  +  ++
Sbjct: 121 RLPLAERWPGTLQTLAQRGLSRLLLLGG-------ARLCAGLLQDDAVDGLQLTLTPRLL 173

Query: 321 GEG---------GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
           G           G+P+ L           V R   G ++ L Y  +
Sbjct: 174 GGEHCWLPADTLGLPADLGSSA-AWGLEAVERLE-GDELMLRYRRQ 217


>gi|21449379|gb|AAM54111.1|AF453501_37 dihydrofolate reductase [Actinosynnema pretiosum subsp. auranticum]
          Length = 190

 Score = 36.8 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-G 332
           D   L+  L       + + GGA +A   +    +D +++    +V G G   +PL   G
Sbjct: 110 DPVGLVRELKREDGLDVWLCGGADLAGQLLPE--IDELVVKTYPVVAGGG---TPLFRAG 164

Query: 333 YLEKNFMCVRRDYFG 347
           +  + F  V    F 
Sbjct: 165 FAPRAFRPVDVRAFD 179


>gi|331694406|ref|YP_004330645.1| bifunctional deaminase-reductase domain-containing protein
           [Pseudonocardia dioxanivorans CB1190]
 gi|326949095|gb|AEA22792.1| bifunctional deaminase-reductase domain protein [Pseudonocardia
           dioxanivorans CB1190]
          Length = 200

 Score = 36.8 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 44/161 (27%), Gaps = 38/161 (23%)

Query: 165 GMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIIL 224
                        + K+ +    A   A++ G  T  +               +P     
Sbjct: 43  WTYENEPTGAPDPVDKSYLDDAMADLGAVICGRNTYDS--------AGAWGGRNPW---- 90

Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTIL 282
                              P+ +VT              +   ++ D  D  L +     
Sbjct: 91  ----------------PDGPLYVVTH-----RVEDQPDPDSGFVFVDGFDAALARARESA 129

Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
             R +  ++  GGAA     +    VD + +  + +V+G G
Sbjct: 130 GDRAIN-VM--GGAATIRQALAGGHVDELGISVAPLVLGGG 167


>gi|229512710|ref|ZP_04402178.1| hypothetical protein VCB_000353 [Vibrio cholerae TMA 21]
 gi|229350220|gb|EEO15172.1| hypothetical protein VCB_000353 [Vibrio cholerae TMA 21]
          Length = 496

 Score = 36.8 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 9/70 (12%)

Query: 47  TAYGGCPHAEVQALEEAGEE---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           T YG   HAE++A+          +  T Y T  PC +      CA+ I+  G+ RVV  
Sbjct: 341 TEYGRIVHAEMEAILSCARHYISTKDTTLYCTTFPCHN------CAKHIVASGVARVVYV 394

Query: 104 VDDPDVRVSG 113
              P  + + 
Sbjct: 395 EPYPKSKATD 404


>gi|288918100|ref|ZP_06412457.1| acetyl-CoA acetyltransferase [Frankia sp. EUN1f]
 gi|288350482|gb|EFC84702.1| acetyl-CoA acetyltransferase [Frankia sp. EUN1f]
          Length = 397

 Score = 36.8 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 70/211 (33%), Gaps = 24/211 (11%)

Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG 168
            +  G  ++  + +GI     ME+   +    Y      +   I   +     + I    
Sbjct: 199 TQADGSVVEVSADEGIRPSTSMEALAGLRPAYYDEAAAARFPEIGWNVTAGNASQISDGS 258

Query: 169 CGSVPITGFISKNQVHLLRAQ-SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPH 227
              +  T   ++      RA+    ++VG      DDP L  R          R++    
Sbjct: 259 AALLITTSERARELGLRPRARLHSFVVVG------DDPFLMLRGVIPATR---RVLERSG 309

Query: 228 FKLSLDSKIIKTALLAPVIIV---TENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL-- 282
            +L  D  + +       +++    E   P   +  R   I + +       +++T L  
Sbjct: 310 LRLD-DIDLFEVNEAFATVVLDWRAEIGAPAERVNTRGGAIALGHPLGASGARIMTTLVH 368

Query: 283 ------VGRGVTSLLVEGGAAVAHSFINSRL 307
                    G+ + + E G  +A++ I  RL
Sbjct: 369 ALEQTGGRYGLQT-MCEAGG-LANATILERL 397


>gi|218514772|ref|ZP_03511612.1| putative dihydrofolate reductase protein [Rhizobium etli 8C-3]
          Length = 132

 Score = 36.8 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
           +L+ G A V  S  N   VD   L    +++G G      EE  +  N   V  + F S 
Sbjct: 66  ILIFGSATVVQSLTNLGAVDEFHLLVHPVLLGGGTR--LFEEVDVRMNLRRVDVEAFDSG 123

Query: 350 VC 351
           + 
Sbjct: 124 IV 125


>gi|125572137|gb|EAZ13652.1| hypothetical protein OsJ_03569 [Oryza sativa Japonica Group]
          Length = 157

 Score = 36.8 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA 48
           S+D  FM+ A   ++        N  V   +V ++GI++G G   
Sbjct: 89  SWDDYFMAIAFLSAKRSK---DPNRQVGACLVSQEGIILGIGYNG 130


>gi|146338869|ref|YP_001203917.1| putative ABC transporter ATP-binding protein [Bradyrhizobium sp.
           ORS278]
 gi|146191675|emb|CAL75680.1| Putative ABC transporter ATP-binding protein [Bradyrhizobium sp.
           ORS278]
          Length = 516

 Score = 36.8 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 55/161 (34%), Gaps = 29/161 (18%)

Query: 187 RAQSDAILVGIGTVLAD---DPELTCRLNGLQEHSPMR--II-------------LDPHF 228
           R+  DA+  GI TV  +    P L+   N      P R  ++             LD   
Sbjct: 81  RSAKDAVDAGIATVYQEVNLLPNLSVAQNLYLGRQPTRFGVVREGEMKRRARAMLLDYGL 140

Query: 229 KLSLDSKI--IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286
            + + + +     A+     I    D     L   +   ++   +   L  ++  L  RG
Sbjct: 141 DIDVGAPLSSYSVAVQHITAIARAVDLSARVLILDEPTASLDRHEVEILFSVMRKLADRG 200

Query: 287 VTSLLVEGGAAVAHSFINS--RLVDSIILYRSQIVIGEGGI 325
           +  + V         F++    + D + + R+  +IG   I
Sbjct: 201 IGIIFV-------SHFLDQVYEICDRVTVLRNGRLIGSRDI 234


>gi|146308130|ref|YP_001188595.1| CMP/dCMP deaminase, zinc-binding [Pseudomonas mendocina ymp]
 gi|145576331|gb|ABP85863.1| CMP/dCMP deaminase, zinc-binding protein [Pseudomonas mendocina
           ymp]
          Length = 186

 Score = 36.8 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 23/124 (18%)

Query: 4   SSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKD-GIVIGRGVTA-----YGGCPHA 55
           +  D  +       +   +  G  +    V  +++ D G ++  G        Y    HA
Sbjct: 16  TRADDTWARLCCEQALLALEEGCYA----VGAVLIDDAGELLCSGRNQVFAGHYASAAHA 71

Query: 56  EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
           E+Q L++        +  G T YV+LEPC        C   I+  GIRRV     D D  
Sbjct: 72  EMQVLDQLEAEHPQLDRSGLTLYVSLEPCLM------CHSRILLAGIRRVRYLARDRDGG 125

Query: 111 VSGR 114
            + R
Sbjct: 126 FAAR 129


>gi|289522481|ref|ZP_06439335.1| putative cytosine deaminase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289504317|gb|EFD25481.1| putative cytosine deaminase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 165

 Score = 36.8 bits (84), Expect = 6.1,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 18/105 (17%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGR----GVTAYGGCPHAEVQALEEA 63
           +++  A+  SR      S N     ++V  +G V+       +T      HAE+  +E+A
Sbjct: 12  KYLRLAIETSRKAR--ESGNTPFGAVLVGPEGDVLLEQGNVEITEKRCTGHAELVLVEKA 69

Query: 64  -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                 +       Y ++EPC+       C   I    +  ++  
Sbjct: 70  SQIYDKDFLWQCILYTSVEPCAM------CTGAIYWSNVGTIIYA 108


>gi|260906578|ref|ZP_05914900.1| hypothetical protein BlinB_14705 [Brevibacterium linens BL2]
          Length = 183

 Score = 36.8 bits (84), Expect = 6.1,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 44/141 (31%), Gaps = 13/141 (9%)

Query: 222 IILDPHFKLSLDSKIIKTALLA----PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277
           II+D    L+    +I     A    PV ++TE+D   L     +  ++           
Sbjct: 45  IIIDRRTALNPALPVINAPGKALEHTPVHVLTESDPKALTQQLAEAGLDYRAQHFTPEAA 104

Query: 278 LLTILVGRGVTSLLV-EGGAAVAHSFINS--RLVDSIILYRSQIVIGEGGIP-SPLEEGY 333
             TI         LV E G  +A   +++       + L  S +       P S   +  
Sbjct: 105 AATIEALEATNETLVCESGPNLAFRLLDAVPGA--ELHLSLSPLY---SRTPGSHFSQLE 159

Query: 334 LEKNFMCVRRDYFGSDVCLEY 354
              +   +        V + Y
Sbjct: 160 ATLDLRLIDVRAVDDQVFVRY 180


>gi|119394655|gb|ABL74489.1| putative cytidine deaminase [Zea mays]
 gi|119394657|gb|ABL74490.1| putative cytidine deaminase [Zea mays]
          Length = 186

 Score = 36.8 bits (84), Expect = 6.1,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 38/126 (30%), Gaps = 36/126 (28%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVAC--------------LIVKDGIVIGRGVTA 48
           V   D +F++ A+  +   V      P                  +++K           
Sbjct: 27  VQDKDHKFLTKAVEEAYRGVDCGDGGP-FGAVVVRNDEVVVSCHNMVLKH---------- 75

Query: 49  YGGCPHAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                HAEV A+ EA ++           Y + EPC      P C   +    I+R+V  
Sbjct: 76  TDPTAHAEVTAIREACKKLGKIELSDCEIYASCEPC------PMCFGAVHLSRIKRLVYG 129

Query: 104 VDDPDV 109
                 
Sbjct: 130 AKAEAA 135


>gi|323358814|ref|YP_004225210.1| dihydrofolate reductase [Microbacterium testaceum StLB037]
 gi|323275185|dbj|BAJ75330.1| dihydrofolate reductase [Microbacterium testaceum StLB037]
          Length = 213

 Score = 36.4 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 17/32 (53%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           GG +   + + + LVD + +    +++G GG 
Sbjct: 152 GGLSTVRAALEADLVDRLHVAVRPVILGRGGR 183


>gi|282599202|ref|YP_003358514.1| Cd allosteric enzyme [Shigella phage phiSboM-AG3]
 gi|226973508|gb|ACO94261.1| Cd allosteric enzyme [Shigella phage phiSboM-AG3]
          Length = 168

 Score = 36.4 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 40/123 (32%), Gaps = 32/123 (26%)

Query: 31  VACLIV--KDGIVIGRGVTAYG-GCP-----------------HAEVQALE---EAGEEA 67
           V C+IV  +    +  G      G P                 HAE  AL    +  E+ 
Sbjct: 29  VGCVIVDPRVDQPLSIGWNGTAPGAPNVCEQEVDGQLVSVGVIHAEENALSKLPQHTEDC 88

Query: 68  RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
            G   +VT  PC      P C + II+ G    V             G+  +   GI V 
Sbjct: 89  CGLVMFVTHSPC------PECTRRIIDSGKIAKVF---YDRPYRITDGIIEMLAAGIEVY 139

Query: 128 RMM 130
           RM 
Sbjct: 140 RMC 142


>gi|257057254|ref|YP_003135086.1| dihydrofolate reductase [Saccharomonospora viridis DSM 43017]
 gi|256587126|gb|ACU98259.1| dihydrofolate reductase [Saccharomonospora viridis DSM 43017]
          Length = 194

 Score = 36.4 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 3/73 (4%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           D    +  L       + + GG  +A +      +D +I+    IV G+ GIP      +
Sbjct: 112 DPVATVRALKQEDGMDIWLCGGGRLAATLREE--IDRLIVKLHPIVAGD-GIPLFHGASF 168

Query: 334 LEKNFMCVRRDYF 346
             + +      ++
Sbjct: 169 RPERYDLTDVQHY 181


>gi|195623500|gb|ACG33580.1| cytidine/deoxycytidylate deaminase family protein [Zea mays]
          Length = 186

 Score = 36.4 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 38/126 (30%), Gaps = 36/126 (28%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVAC--------------LIVKDGIVIGRGVTA 48
           V   D +F++ A+  +   V      P                  +++K           
Sbjct: 27  VQDRDHKFLTKAVEEAYRGVDCGDGGP-FGAVVVCNDEVVVSCHNMVLKH---------- 75

Query: 49  YGGCPHAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                HAEV A+ EA ++           Y + EPC      P C   +    I+R+V  
Sbjct: 76  TDPTAHAEVTAIREACKKLGKIELSDCEIYASCEPC------PMCFSAVHLSRIKRLVYG 129

Query: 104 VDDPDV 109
                 
Sbjct: 130 AKAEAA 135


>gi|146338815|ref|YP_001203863.1| putative cytidine and deoxycytidylate deaminase zinc-binding
           protein [Bradyrhizobium sp. ORS278]
 gi|146191621|emb|CAL75626.1| putative cytidine and deoxycytidylate deaminase zinc-binding
           protein [Bradyrhizobium sp. ORS278]
          Length = 139

 Score = 36.4 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 31/89 (34%), Gaps = 16/89 (17%)

Query: 25  TSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEAGEEARG-----ATAYV 74
           +  N   A ++V  DG V+               HAE     +A           AT Y 
Sbjct: 2   SHGNHPFAAILVDGDGRVLIEAENGYMPDRDATAHAERLVATQACRSIAPDIRATATLYS 61

Query: 75  TLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
           + EPC+       CA  I   GI RVV  
Sbjct: 62  SAEPCAM------CAGAIYWAGIGRVVYG 84


>gi|54022280|ref|YP_116522.1| hypothetical protein nfa3160 [Nocardia farcinica IFM 10152]
 gi|54013788|dbj|BAD55158.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 190

 Score = 36.4 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
           RD + L+  L       + + GG  +A +  +   +D +++    +V G+ GIP      
Sbjct: 109 RDPRALVRELKASDGPDIWLAGGGRLAATLRDE--IDEMVVKHYPVVAGD-GIPM-FSGA 164

Query: 333 YLEKNFMCVRRDYF 346
           +    F  VRR  F
Sbjct: 165 FGPTRFTPVRRQGF 178


>gi|258653663|ref|YP_003202819.1| bifunctional deaminase-reductase domain-containing protein
           [Nakamurella multipartita DSM 44233]
 gi|258556888|gb|ACV79830.1| bifunctional deaminase-reductase domain protein [Nakamurella
           multipartita DSM 44233]
          Length = 219

 Score = 36.4 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 7/91 (7%)

Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
           D  +  T    PVI++T +  P L +A         + D   +  L       G   + +
Sbjct: 100 DDPVFHT----PVIVLTHHPRPPLEMAG---GTTFHFVDADPVAALAQARALAGGLDVRI 152

Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            GG +    F+ + L+D + +    I++G G
Sbjct: 153 GGGVSTVRQFLEADLIDHLHIVVVPIILGRG 183


>gi|170743896|ref|YP_001772551.1| formate dehydrogenase [Methylobacterium sp. 4-46]
 gi|168198170|gb|ACA20117.1| Formate dehydrogenase [Methylobacterium sp. 4-46]
          Length = 853

 Score = 36.4 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 72/288 (25%), Gaps = 28/288 (9%)

Query: 22  VGLTSTNPSVACLIV-KDGIVIGR--GVTAYGGCPHAEVQALEEAGEEARGATAYVTLEP 78
             LT   P    +   +   ++    G T   G P A  +AL++ G  A G   Y  + P
Sbjct: 489 QALTWDYPVEGAVAEPRAEAILAEINGYTVADGKPVASYKALKDDGSTACGGWMYCGIMP 548

Query: 79  CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138
               GR+   A+           +                 S            +   + 
Sbjct: 549 --EEGRNLARARRPDGPDGPGSHLGWAFSWPSNRRTLYNRASADPEGRPWSEAKKMVWWD 606

Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA---ILV 195
            A                   +         G   + G            ++D    + V
Sbjct: 607 EAQGRWTGLDVPDFVETKRPDERPDWSKHPRGMDALGGDDPFIM------EADGKCQVFV 660

Query: 196 GIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
             G  L D P  T          +P+        +++  +K+      A    +    DP
Sbjct: 661 PTG--LKDGPLPTHYEPVESPVRNPLY-----GQQMNPAAKLWGRPGNA----LHAPQDP 709

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
                F    +  ++C      +++            VE    +A   
Sbjct: 710 RFPYVFTTFRLTELHCGGV-PTRVMPHTAELQ-PEAFVEVSPELAGEL 755


>gi|229542647|ref|ZP_04431707.1| phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP
           cyclohydrolase [Bacillus coagulans 36D1]
 gi|229327067|gb|EEN92742.1| phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP
           cyclohydrolase [Bacillus coagulans 36D1]
          Length = 509

 Score = 36.4 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 14  ALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
           AL+ +   V    +N     ++V D    +G G         AE+ AL +AGE+A+GA
Sbjct: 399 ALKLAWKVVKHVKSN----AIVVTDTEKTLGIGAGQMNRVGAAEI-ALAQAGEKAKGA 451


>gi|162452448|ref|YP_001614815.1| DNA-binding protein [Sorangium cellulosum 'So ce 56']
 gi|161163030|emb|CAN94335.1| DNA-binding protein [Sorangium cellulosum 'So ce 56']
          Length = 221

 Score = 36.4 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GG A    ++ + L+D + L  S +++G G
Sbjct: 160 GGVATVRQYLTAGLIDELHLVISPVLLGRG 189


>gi|296111639|ref|YP_003622021.1| reductase (putative) [Leuconostoc kimchii IMSNU 11154]
 gi|295833171|gb|ADG41052.1| reductase (putative) [Leuconostoc kimchii IMSNU 11154]
          Length = 182

 Score = 36.4 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 7/57 (12%), Positives = 19/57 (33%), Gaps = 2/57 (3%)

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
            + + +VD + +    +++G G      E G        +     G    + +   +
Sbjct: 120 LLEAHMVDELWVQIVPVLLGRG--KRLFEPGDYRYRLQTIGTTQLGEMTEIHFKRVD 174


>gi|115399304|ref|XP_001215241.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114192124|gb|EAU33824.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 165

 Score = 36.4 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 18/111 (16%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGR----GVTAYGGCPHAE- 56
           VS+ D  ++   +  +R  +           ++V   G ++       VT      H E 
Sbjct: 2   VSNTDITYLRRCVELAREALQAGDA--PFGSVLVDAAGNILKEDRNRTVTDADVTLHPEL 59

Query: 57  VQALEEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
             AL      ++     AT Y + E C      P CA      G+ R+V  
Sbjct: 60  TLALWAQKNLSQNERATATVYTSGEHC------PMCAAVHANVGLGRIVYA 104


>gi|76160949|gb|ABA40438.1| unknown [Solanum tuberosum]
          Length = 186

 Score = 36.4 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 38/126 (30%), Gaps = 36/126 (28%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVAC--------------LIVKDGIVIGRGVTA 48
           V   D +F++ A+  +   V      P                  +++K           
Sbjct: 27  VRDRDHKFLTQAVEEAYKGVECGDGGP-FGAVVVCNNEVVVSCHNMVLKH---------- 75

Query: 49  YGGCPHAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                HAEV A+ EA ++           Y + EPC      P C   I    I+R+V  
Sbjct: 76  TDPTAHAEVTAVREACKKLNRIELADCEIYASCEPC------PMCFGAIHLSRIKRLVYG 129

Query: 104 VDDPDV 109
                 
Sbjct: 130 AKAEAA 135


>gi|162461371|ref|NP_001105964.1| cytidine deaminase2 [Zea mays]
 gi|119394647|gb|ABL74485.1| putative cytidine deaminase [Zea mays]
 gi|119394649|gb|ABL74486.1| putative cytidine deaminase [Zea mays]
          Length = 186

 Score = 36.4 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 38/126 (30%), Gaps = 36/126 (28%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVAC--------------LIVKDGIVIGRGVTA 48
           V   D +F++ A+  +   V      P                  +++K           
Sbjct: 27  VQDRDHKFLTKAVEEAYRGVDCGDGGP-FGAVVVCNDEVVVSCHNMVLKH---------- 75

Query: 49  YGGCPHAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                HAEV A+ EA ++           Y + EPC      P C   +    I+R+V  
Sbjct: 76  TDPTAHAEVTAIREACKKLGKIELSDCEIYASCEPC------PMCFGAVHLSRIKRLVYG 129

Query: 104 VDDPDV 109
                 
Sbjct: 130 AKAEAA 135


>gi|282864006|ref|ZP_06273063.1| bifunctional deaminase-reductase-like protein [Streptomyces sp.
           ACTE]
 gi|282561084|gb|EFB66629.1| bifunctional deaminase-reductase-like protein [Streptomyces sp.
           ACTE]
          Length = 214

 Score = 36.4 bits (83), Expect = 6.8,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 18/30 (60%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GG +    F+++ LVD++ +  + + +G G
Sbjct: 152 GGVSTVRQFLDADLVDTLHVAVAPVKLGSG 181


>gi|209879740|ref|XP_002141310.1| cytidine/deoxycytidylate deaminase family protein [Cryptosporidium
           muris RN66]
 gi|209556916|gb|EEA06961.1| cytidine/deoxycytidylate deaminase family protein [Cryptosporidium
           muris RN66]
          Length = 314

 Score = 36.4 bits (83), Expect = 6.8,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 36/113 (31%), Gaps = 11/113 (9%)

Query: 32  ACLIVKDGIVIGRG---VTAYGGCPHAEVQALEEAGEEARGATAYVTL---EPCSHYGR- 84
            C+IV + IVIG G           H  + A+    ++ + +    ++    P S+    
Sbjct: 173 GCVIVLNDIVIGYGLDKRHVSYPWDHPAIDAIRNTSDKLKASRDVRSMGNKSPGSNLSNV 232

Query: 85  ----SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
               +      + +  +    +     +  VS       S+   +      +E
Sbjct: 233 NSILTNSYRVLLNQQYLCTSAIAYLSHEPCVSCSMALLHSRISQVFYEYTNNE 285


>gi|222147059|ref|YP_002548016.1| hypothetical protein Avi_0051 [Agrobacterium vitis S4]
 gi|221734049|gb|ACM35012.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 502

 Score = 36.4 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 45/146 (30%), Gaps = 27/146 (18%)

Query: 160 QDNMIGMAGCGSVPITGFISK----NQVHLLRAQSDA---------ILVGIGTVLADDPE 206
                   G   + ITG   +     +V  +RA  DA          L G     A    
Sbjct: 128 LHYGFPPDGGRELTITGPEDRLGRIRRVLAIRAFLDANGMAGARRRFLTGDADYRA---Y 184

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA---LAFRKK 263
            T R++G     P RI++D   +    + II+     P ++    D           +  
Sbjct: 185 ETARIDG----QPQRIVMDSPKR--PATPIIRLGKTYPELVHLAEDHRAFVAIDQLLKDA 238

Query: 264 NINIIYCDCRDLKKLL--TILVGRGV 287
            + +      D   +L    L   G+
Sbjct: 239 GLTVPEIYASDPDGILLIEDLGQDGI 264


>gi|260765332|gb|ACX49726.1| cytidine deaminase [uncultured Chloroflexi bacterium 1i19]
          Length = 128

 Score = 36.4 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 12/113 (10%)

Query: 18  SRWHVGLTSTNPSVAC-LIVKDGIVIGRGVT----AYGGCPHAEVQALEEA---GEEARG 69
           +R       +N +V   ++ ++G +I  G      +YGG   AE  AL  A   G+    
Sbjct: 17  ARKQAYAPYSNYAVGAAVLTENGEII-PGCNVENASYGGTICAERVALTSAIAQGKRRLT 75

Query: 70  ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
           A A VT++  S  G    C Q ++E G+   V   D      S      L   
Sbjct: 76  AIAVVTVDGGSPCGF---CRQVMVELGVDMDVYISDAAGNFRSTTVRALLPDA 125


>gi|315442375|ref|YP_004075254.1| transposase [Mycobacterium sp. Spyr1]
 gi|315444571|ref|YP_004077450.1| transposase [Mycobacterium sp. Spyr1]
 gi|315445362|ref|YP_004078241.1| transposase [Mycobacterium sp. Spyr1]
 gi|315446146|ref|YP_004079025.1| transposase [Mycobacterium sp. Spyr1]
 gi|315260678|gb|ADT97419.1| transposase [Mycobacterium sp. Spyr1]
 gi|315262874|gb|ADT99615.1| transposase [Mycobacterium sp. Spyr1]
 gi|315263665|gb|ADU00407.1| transposase [Mycobacterium sp. Spyr1]
 gi|315264449|gb|ADU01191.1| transposase [Mycobacterium sp. Spyr1]
          Length = 451

 Score = 36.4 bits (83), Expect = 7.2,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 9/71 (12%)

Query: 284 GRGVTSLLVEGGAAV--AHSFINSRLVDSIIL-----YRSQIVIGEGGIPSPLEEGYLEK 336
           G+ V S LVE G+ V  A +   S  VD ++        +  + GEGG+   L +  LE+
Sbjct: 4   GKDVDSSLVEAGSTVEMAEALRASGAVDELLAQVDSGEVA--LTGEGGLLPGLIKLALER 61

Query: 337 NFMCVRRDYFG 347
                  ++ G
Sbjct: 62  GLAAELTEHLG 72


>gi|218199364|gb|EEC81791.1| hypothetical protein OsI_25504 [Oryza sativa Indica Group]
 gi|222636744|gb|EEE66876.1| hypothetical protein OsJ_23692 [Oryza sativa Japonica Group]
          Length = 186

 Score = 36.4 bits (83), Expect = 7.2,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 42/151 (27%), Gaps = 39/151 (25%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVAC--------------LIVKDGIVIGRGVTA 48
           V   D +F++ A+  +   V      P                  +++K           
Sbjct: 27  VQDRDHKFLTKAVEEAYRGVDCGDGGP-FGAVVVRNDEVVVSCHNMVLKH---------- 75

Query: 49  YGGCPHAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                HAEV A+ EA ++           Y + EPC      P C   +    I+R+V  
Sbjct: 76  TDPTAHAEVTAIREACKKLGKIELSDCEIYASCEPC------PMCFGAVHLSRIKRLVYG 129

Query: 104 VDDPDV---RVSGRGLQWLSQKGIIVDRMME 131
                             L   G      ME
Sbjct: 130 AKAEAAIAIGFDDFIADALRGTGFYQKANME 160


>gi|182437612|ref|YP_001825331.1| hypothetical protein SGR_3819 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178466128|dbj|BAG20648.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 214

 Score = 36.4 bits (83), Expect = 7.2,   Method: Composition-based stats.
 Identities = 7/30 (23%), Positives = 17/30 (56%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GG      F+++ L+D++ +  + + +G G
Sbjct: 152 GGVTTIREFLDADLIDTLHVAVAPVKLGTG 181


>gi|146320935|ref|YP_001200646.1| dihydrofolate reductase [Streptococcus suis 98HAH33]
 gi|145691741|gb|ABP92246.1| Dihydrofolate reductase [Streptococcus suis 98HAH33]
 gi|292558405|gb|ADE31406.1| Dihydrofolate reductase [Streptococcus suis GZ1]
 gi|319758187|gb|ADV70129.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Streptococcus suis JS14]
          Length = 77

 Score = 36.4 bits (83), Expect = 7.2,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 22/43 (51%)

Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
            L  R    + + GGA++    + + ++D +I+     ++G+G
Sbjct: 2   ELRSREGGDIWLFGGASLVQDCLEAGVIDHLIIGIIPTILGDG 44


>gi|282863790|ref|ZP_06272848.1| CMP/dCMP deaminase zinc-binding [Streptomyces sp. ACTE]
 gi|282561491|gb|EFB67035.1| CMP/dCMP deaminase zinc-binding [Streptomyces sp. ACTE]
          Length = 142

 Score = 36.4 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 37/110 (33%), Gaps = 18/110 (16%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----TAYGGCPHAEVQ 58
           +  D   +  A+  +         +P    L+   DG V+        T      H E++
Sbjct: 3   TPDDHTLLRRAIALAAEAR--EGGDPPFGSLLSGPDGTVLAEERNTTLTDGDITAHPELK 60

Query: 59  ALEEAGEEARGATA-----YVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
               A  E   ATA     Y + +PC        C   I   G+RRVV  
Sbjct: 61  LARWAARELDAATAAETTMYTSCQPC------EMCQAVIQRAGLRRVVFA 104


>gi|197123715|ref|YP_002135666.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
           sp. K]
 gi|196173564|gb|ACG74537.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
           sp. K]
          Length = 182

 Score = 36.4 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 4/85 (4%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           DL + +  L       +LV G   ++ +     LVD   L    +V G G  P       
Sbjct: 101 DLTRAVKALKKATPRGILV-GSPQLSAALQRLGLVDEYRLVVHPVVAGHG--PYLFTGLQ 157

Query: 334 LEKNFMCVRRDYFGSDVC-LEYIGK 357
                  V      S +  L Y  +
Sbjct: 158 PSLRLKLVSARRLKSGIVTLHYRRR 182


>gi|315444248|ref|YP_004077127.1| cytosine/adenosine deaminase [Mycobacterium sp. Spyr1]
 gi|315262551|gb|ADT99292.1| cytosine/adenosine deaminase [Mycobacterium sp. Spyr1]
          Length = 159

 Score = 36.4 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 35/118 (29%), Gaps = 27/118 (22%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGG 51
           M V+  D R +   +  +R              L++        GVT             
Sbjct: 1   MAVTDDDLRHLRRCVELAREAQEAGDE--PFGSLLLD-----ADGVTRVEDRNRVKDGDA 53

Query: 52  CPHAE----VQALEEAGEEARG-ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
             H E      A+E    + R  AT Y + E C+    +          G+ RVV   
Sbjct: 54  TRHPEYAIAKWAVENLSPDDRARATVYTSGEHCTMCAAAHAWV------GLGRVVYAA 105


>gi|115471365|ref|NP_001059281.1| Os07g0245100 [Oryza sativa Japonica Group]
 gi|113610817|dbj|BAF21195.1| Os07g0245100 [Oryza sativa Japonica Group]
          Length = 186

 Score = 36.4 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 42/151 (27%), Gaps = 39/151 (25%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVAC--------------LIVKDGIVIGRGVTA 48
           V   D +F++ A+  +   V      P                  +++K           
Sbjct: 27  VQDRDHKFLTKAVEEAYRGVDCGDGGP-FGAVVVRNDEVVVSCHNMVLKH---------- 75

Query: 49  YGGCPHAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                HAEV A+ EA ++           Y + EPC      P C   +    I+R+V  
Sbjct: 76  TDPTAHAEVTAIREACKKLGKIELSDCEIYASCEPC------PMCFGAVHLSRIKRLVYG 129

Query: 104 VDDPDV---RVSGRGLQWLSQKGIIVDRMME 131
                             L   G      ME
Sbjct: 130 AKAEAAIAIGFDDFIADALRGTGFYQKANME 160


>gi|260906969|ref|ZP_05915291.1| deaminase-reductase domain-containing protein [Brevibacterium
           linens BL2]
          Length = 189

 Score = 36.4 bits (83), Expect = 7.5,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 3/84 (3%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
           D  + +  L       + + GG  +A S      +D +I+    + +G G      + G+
Sbjct: 104 DPIERIRQLKDEQGKGIWLVGGGTLAASLRPE--IDELIIKLGPVTLGSGIPLWGHDAGF 161

Query: 334 LEKNFMCVRRDYF-GSDVCLEYIG 356
             + +       + G    L +  
Sbjct: 162 DREIWSRTEATSYPGGMTLLRFER 185


>gi|271962570|ref|YP_003336766.1| bifunctional deaminase-reductase-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270505745|gb|ACZ84023.1| bifunctional deaminase-reductase-like protein [Streptosporangium
           roseum DSM 43021]
          Length = 178

 Score = 36.4 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 3/87 (3%)

Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
                DL   +T L       ++V G   +  + + + L+D   ++   +V G G     
Sbjct: 93  VIPAADLVPAITKLKEEPGGDIIVWGCGRLTDALLEAGLMDEYKIWVYPVVRGHGQR--- 149

Query: 329 LEEGYLEKNFMCVRRDYFGSDVCLEYI 355
                L           FG  V L+Y 
Sbjct: 150 FWREGLSAKLSLTEARAFGQVVLLDYR 176


>gi|224371400|ref|YP_002605564.1| Cdh2 [Desulfobacterium autotrophicum HRM2]
 gi|223694117|gb|ACN17400.1| Cdh2 [Desulfobacterium autotrophicum HRM2]
          Length = 626

 Score = 36.4 bits (83), Expect = 7.7,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 34  LIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCA 89
           LI  + +++  G  A      G    E  A ++AG+  +G    + L P  H G     +
Sbjct: 465 LIKNNVLIVSTGCNAIACAKAGLMLPE--AADQAGDGLKGVCKALGLPPVLHMGSCVDIS 522

Query: 90  QFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
           + +  C      + VD  D+ V+G   +W+S+K +
Sbjct: 523 RILTVCAAVANALGVDISDLPVAGAAPEWMSEKAV 557


>gi|319948586|ref|ZP_08022713.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Dietzia cinnamea P4]
 gi|319437752|gb|EFV92745.1| riboflavin biosynthesis protein RibD domain-containing protein
           [Dietzia cinnamea P4]
          Length = 187

 Score = 36.4 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 4/64 (6%)

Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLE 353
           G   A   I + +V   + +    V+G G    P +      +     +  F G  V L 
Sbjct: 127 GPTTAAEAIRAGMVSDFLFFVVPKVVGGGLRALPPDA---RLDLELAEQRVFGGGTVLLH 183

Query: 354 YIGK 357
           Y  +
Sbjct: 184 YRSR 187


>gi|299133777|ref|ZP_07026971.1| bifunctional deaminase-reductase domain protein [Afipia sp. 1NLS2]
 gi|298591613|gb|EFI51814.1| bifunctional deaminase-reductase domain protein [Afipia sp. 1NLS2]
          Length = 219

 Score = 36.4 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           PV ++T +    + +        +       L +      G+ +    V GG      ++
Sbjct: 109 PVFVLTHHARAPITMKGGTVFHFVTDGIEVALDRARQAAGGKDIR---VGGGVTTIREYL 165

Query: 304 NSRLVDSIILYRSQIVIGEGGI 325
            +RL+D + +  S +++G G  
Sbjct: 166 RARLIDDLHIAISPVLLGRGEA 187


>gi|237880781|gb|ACR33039.1| cytosine/adenine deaminase [Actinoplanes garbadinensis]
          Length = 161

 Score = 36.4 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 11/100 (11%)

Query: 1  MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT---AYGGCPHAE 56
          M ++  D   +   +  +R  +           ++V  DG V+              H E
Sbjct: 1  MTITETDLAHLRRCVDLAREALDDGDE--PFGSVLVSADGKVLFEDRNRVRHGDATQHPE 58

Query: 57 V----QALEEAGEEARG-ATAYVTLEPCSHYGRSPPCAQF 91
                A E      R  AT Y + E C     S    + 
Sbjct: 59 FAISRWAAEHLTPRERASATVYTSGEHCPMCSASHGWVRL 98


>gi|189459481|ref|ZP_03008266.1| hypothetical protein BACCOP_00105 [Bacteroides coprocola DSM 17136]
 gi|189433733|gb|EDV02718.1| hypothetical protein BACCOP_00105 [Bacteroides coprocola DSM 17136]
          Length = 150

 Score = 36.4 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 291 LVEGG---AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
           L+E     A + +  I  RLVD IILY   ++ G G      +    E  + C     + 
Sbjct: 71  LIEATEKTAGIINGMIRMRLVDEIILYMVPVIAGNGSR--LFQSSLPESEWTCTESKRWK 128

Query: 348 SDVCLEYIGK 357
            ++     G+
Sbjct: 129 DNIIRITYGR 138


>gi|302551564|ref|ZP_07303906.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736]
 gi|302469182|gb|EFL32275.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736]
          Length = 215

 Score = 36.4 bits (83), Expect = 7.9,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQ-IVIGEG 323
           GGA V   F+++ LVD++ +  S  + +G G
Sbjct: 152 GGATVIRQFLDADLVDTLHVAVSPGVKLGSG 182


>gi|218288258|ref|ZP_03492557.1| phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP
           cyclohydrolase [Alicyclobacillus acidocaldarius LAA1]
 gi|218241617|gb|EED08790.1| phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP
           cyclohydrolase [Alicyclobacillus acidocaldarius LAA1]
          Length = 522

 Score = 36.4 bits (83), Expect = 7.9,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 39/124 (31%), Gaps = 29/124 (23%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE 62
           +  DA +   ALRF+   V    +N     ++V +    +G G         AE+ AL +
Sbjct: 404 TPTDAEY--EALRFAWRAVQFVKSN----AIVVAERDKTLGIGAGQMNRVGAAEI-ALRQ 456

Query: 63  AGEEARGATA--------------------YVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
           AG  A+GA                         ++P          A    E GI  V  
Sbjct: 457 AGARAKGAVLASDAFFPMRDTVDAAARAGITAIVQPGGSIRDEDSIAAA-DEAGIAMVFT 515

Query: 103 CVDD 106
               
Sbjct: 516 GERH 519


>gi|332529493|ref|ZP_08405451.1| acyltransferase 3 [Hylemonella gracilis ATCC 19624]
 gi|332041013|gb|EGI77381.1| acyltransferase 3 [Hylemonella gracilis ATCC 19624]
          Length = 672

 Score = 36.4 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
           VLAD+PELT     L+   P+R++L      S   +++K  +  
Sbjct: 559 VLADNPELTFDARMLELGQPLRVVLHRMQGTSASQRLLKDQVRT 602


>gi|256377302|ref|YP_003100962.1| bifunctional deaminase-reductase domain protein [Actinosynnema
           mirum DSM 43827]
 gi|255921605|gb|ACU37116.1| bifunctional deaminase-reductase domain protein [Actinosynnema
           mirum DSM 43827]
          Length = 191

 Score = 36.4 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-G 332
           D   L+  L       + + GGA +A   +    +D +++    +V G G   +PL   G
Sbjct: 111 DPVGLVRDLKREDGLDVWLCGGADLAGQLLPE--IDELVVKTYPVVAGGG---TPLFRAG 165

Query: 333 YLEKNFMCVRRDYFG 347
           +  + F  V    F 
Sbjct: 166 FAPRAFTPVDVRAFD 180


>gi|162461226|ref|NP_001105963.1| cytidine deaminase1 [Zea mays]
 gi|119394643|gb|ABL74483.1| putative cytidine deaminase [Zea mays]
 gi|119394645|gb|ABL74484.1| putative cytidine deaminase [Zea mays]
 gi|195654311|gb|ACG46623.1| cytidine/deoxycytidylate deaminase family protein [Zea mays]
          Length = 186

 Score = 36.4 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 42/151 (27%), Gaps = 39/151 (25%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVAC--------------LIVKDGIVIGRGVTA 48
           V   D +F++ A+  +   V      P                  +++K           
Sbjct: 27  VQDRDHKFLTKAVEEAYRGVDCGDGGP-FGAVVVRNDEVVVSCHNMVLKH---------- 75

Query: 49  YGGCPHAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                HAEV A+ EA ++           Y + EPC      P C   +    I+R+V  
Sbjct: 76  TDPTAHAEVTAIREACKKLGKIELSDCEIYASCEPC------PMCFGAVHLSRIKRLVYG 129

Query: 104 VDDPDV---RVSGRGLQWLSQKGIIVDRMME 131
                             L   G      ME
Sbjct: 130 AKAEAAIAIGFDDFIADALRGTGFYQKANME 160


>gi|218515740|ref|ZP_03512580.1| probable dihydrofolate reductase protein [Rhizobium etli 8C-3]
          Length = 179

 Score = 36.4 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           GG A    ++ + LVD +    + +V+G G  
Sbjct: 118 GGVATVRQYLQAGLVDELHFAVAPVVLGMGEA 149


>gi|146302171|ref|YP_001196762.1| hypothetical protein Fjoh_4439 [Flavobacterium johnsoniae UW101]
 gi|146156589|gb|ABQ07443.1| hypothetical protein Fjoh_4439 [Flavobacterium johnsoniae UW101]
          Length = 169

 Score = 36.4 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 21/53 (39%)

Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
           +++  +      +G + + V GGA    SF+     D   +    I+   G +
Sbjct: 86  KNIDAVREFYKAKGYSKIFVAGGAYTYQSFLKEGHADEFYINYLPILTAAGAL 138


>gi|94985053|ref|YP_604417.1| bifunctional deaminase-reductase-like protein [Deinococcus
           geothermalis DSM 11300]
 gi|94555334|gb|ABF45248.1| bifunctional deaminase-reductase-like protein [Deinococcus
           geothermalis DSM 11300]
          Length = 180

 Score = 36.0 bits (82), Expect = 8.1,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 3/103 (2%)

Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
           V +   R+   N       D  + +  L  +    LL+ G   +  + +   L+D   L+
Sbjct: 78  VASRTLRQAGWNARIMPG-DAAQEVARLKRQPGQDLLIYGSGTLVQTLMAHHLIDEYRLW 136

Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
              +V+G G    P  EG    N   +      S V +   G 
Sbjct: 137 LYPVVLGRGQRLFP--EGAPPLNLKRLDVRPLASGVVILTYGP 177


>gi|302556663|ref|ZP_07309005.1| DNA-binding protein [Streptomyces griseoflavus Tu4000]
 gi|302474281|gb|EFL37374.1| DNA-binding protein [Streptomyces griseoflavus Tu4000]
          Length = 215

 Score = 36.0 bits (82), Expect = 8.2,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GG      F+++ LVD++ +  S + +G G
Sbjct: 153 GGVTTIRQFLDADLVDTMHVAVSPVKLGSG 182


>gi|289807927|ref|ZP_06538556.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 48

 Score = 36.0 bits (82), Expect = 8.3,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 71  TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           T YVTLEPC        CA  ++   I RVV    D     +G  +  L   G
Sbjct: 2   TLYVTLEPC------VMCAGAMVHSRIGRVVFGARDAKTGAAGSLIDVLHHPG 48


>gi|119394651|gb|ABL74487.1| putative cytidine deaminase [Zea mays]
 gi|119394653|gb|ABL74488.1| putative cytidine deaminase [Zea mays]
          Length = 186

 Score = 36.0 bits (82), Expect = 8.3,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 42/151 (27%), Gaps = 39/151 (25%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVAC--------------LIVKDGIVIGRGVTA 48
           V   D +F++ A+  +   V      P                  +++K           
Sbjct: 27  VQDRDHKFLTKAVEEAYRGVDCGDGGP-FGAVVVCNDEVVVSCHNMVLKH---------- 75

Query: 49  YGGCPHAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
                HAEV A+ EA ++           Y + EPC      P C   +    I+R+V  
Sbjct: 76  TDPTAHAEVTAIREACKKLGKIELSDCEIYASCEPC------PMCFGAVHLSRIKRLVYG 129

Query: 104 VDDPDV---RVSGRGLQWLSQKGIIVDRMME 131
                             L   G      ME
Sbjct: 130 AKAEAAIAIGFDDFIADALRGTGFYQKANME 160


>gi|271965673|ref|YP_003339869.1| hypothetical protein Sros_4224 [Streptosporangium roseum DSM 43021]
 gi|270508848|gb|ACZ87126.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
          Length = 178

 Score = 36.0 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
            +  + +++ L+D + L    I++G G      E+G  ++  +      FG+ V 
Sbjct: 119 TLTRALLHAGLIDDLHLLVHPIILGAGQR--LFEDGTEQRKLVLADSATFGTGVV 171


>gi|284029115|ref|YP_003379046.1| bifunctional deaminase-reductase domain-containing protein
           [Kribbella flavida DSM 17836]
 gi|283808408|gb|ADB30247.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
           DSM 17836]
          Length = 199

 Score = 36.0 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
             ++  L   G   +LV    ++    + + LVD + L     + G GG     ++G   
Sbjct: 118 ADVVAELRTTGTGDILVNSSPSIIKPLLAADLVDRLYLMIFPEITGGGGR--LFDDGLPA 175

Query: 336 KNFMCVRRD 344
             +    + 
Sbjct: 176 STWTLTDQQ 184


>gi|288918144|ref|ZP_06412500.1| bifunctional deaminase-reductase domain protein [Frankia sp. EUN1f]
 gi|288350420|gb|EFC84641.1| bifunctional deaminase-reductase domain protein [Frankia sp. EUN1f]
          Length = 204

 Score = 36.0 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 5/40 (12%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGE-----GGIPSP 328
           G  A+    +   LVD + L+   +++G      GG+P+P
Sbjct: 133 GSGALVRQLMEVDLVDELRLFVHPLLLGAGKHLFGGLPAP 172


>gi|197124403|ref|YP_002136354.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
           sp. K]
 gi|196174252|gb|ACG75225.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
           sp. K]
          Length = 220

 Score = 36.0 bits (82), Expect = 8.5,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
           PV ++T +  P L +        +       L++      G+ V    + GG A    ++
Sbjct: 112 PVFVLTHHARPPLEMQGGTTFHFVTDGIHAALERAKDAAGGKDVR---LGGGVATVREYL 168

Query: 304 NSRLVDSIILYRSQIVIGEG 323
            +RLVD I L  S +++G G
Sbjct: 169 AARLVDEIHLAISPVLLGRG 188


>gi|331212549|ref|XP_003307544.1| tRNA-specific adenosine deaminase subunit TAD2 [Puccinia graminis
           f. sp. tritici CRL 75-36-700-3]
 gi|309297947|gb|EFP74538.1| tRNA-specific adenosine deaminase subunit TAD2 [Puccinia graminis
           f. sp. tritici CRL 75-36-700-3]
          Length = 298

 Score = 36.0 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 13/63 (20%)

Query: 30  SVACLIVKD--GIVIGRGVTA----YGGCPHAEVQA---LEEAGEEAR----GATAYVTL 76
            V C++V      V+ +G          C HAE  A   L       +        YVT+
Sbjct: 169 PVGCVLVSKTTDKVLSKGRNRTNETKNACLHAEFDAIGGLHSVTPADKIDWNDVKLYVTV 228

Query: 77  EPC 79
           EPC
Sbjct: 229 EPC 231


>gi|325920349|ref|ZP_08182285.1| cytosine/adenosine deaminase [Xanthomonas gardneri ATCC 19865]
 gi|325549169|gb|EGD20087.1| cytosine/adenosine deaminase [Xanthomonas gardneri ATCC 19865]
          Length = 186

 Score = 36.0 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 12  SAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEAGEEA 67
           + A+  SR +V   S  P  A +   D  +I   V           HAE  A   A +  
Sbjct: 32  ALAIELSRMNVQERSGGPFGAVVFGPDNRIIAAAVNRVVPQTTSLAHAENMAYMLAQQRL 91

Query: 68  R---------GATAYVTLEPCSHYGRSPPCA---QFIIECGIRRVVVCVDDPDVRVSGRG 115
           +           T   + +PC     +   A   + +I      V+   +  +  +    
Sbjct: 92  QTPRLNDVLSPVTLATSAQPCCQCYGATVWAGIDRLLIGARAEDVMALTEFDEGPLPADW 151

Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAY 141
           +  L+++GI +V  +   +    L  Y
Sbjct: 152 VGELTRRGIEVVRDVHREQACAVLRNY 178


>gi|289629168|ref|ZP_06462122.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
          Length = 38

 Score = 36.0 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 214 LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD 253
                P+R+++D   ++ LD+   +       ++VT    
Sbjct: 1   AAARPPLRVLIDGRLRVPLDAPFFQAGSA---LVVTCAAA 37


>gi|302867849|ref|YP_003836486.1| bifunctional deaminase-reductase domain-containing protein
           [Micromonospora aurantiaca ATCC 27029]
 gi|302570708|gb|ADL46910.1| bifunctional deaminase-reductase domain protein [Micromonospora
           aurantiaca ATCC 27029]
          Length = 213

 Score = 36.0 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GGA V    + + +VD + L  + +++G G
Sbjct: 145 GGADVIRQALAAGVVDELGLSTAPVILGRG 174


>gi|239982690|ref|ZP_04705214.1| hypothetical protein SalbJ_24889 [Streptomyces albus J1074]
 gi|291454539|ref|ZP_06593929.1| predicted protein [Streptomyces albus J1074]
 gi|291357488|gb|EFE84390.1| predicted protein [Streptomyces albus J1074]
          Length = 90

 Score = 36.0 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
                  +   L+D I L+ + +++G+ G+      G        +  D    +V L Y 
Sbjct: 22  PTAGRQLLERGLIDEIDLHVAPVLLGD-GVRLFDNPGGAPVRLALLNGDDPAREVNLRYR 80

Query: 356 G 356
            
Sbjct: 81  P 81


>gi|302336154|ref|YP_003801361.1| Ferredoxin hydrogenase [Olsenella uli DSM 7084]
 gi|301319994|gb|ADK68481.1| Ferredoxin hydrogenase [Olsenella uli DSM 7084]
          Length = 539

 Score = 36.0 bits (82), Expect = 9.0,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 6/68 (8%)

Query: 296 AAVAHSFINSRLVDSIILYRSQIV---IGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
             V  S +     D +I   +       G  G    L E +    F  V     G+D+C 
Sbjct: 232 GQVIWSILAG---DEVIAAVAPSFVGQFGGKGNVGKLREAFKRLGFSGVEEVALGADLCT 288

Query: 353 EYIGKNLC 360
                +  
Sbjct: 289 VQEADDFL 296


>gi|315505749|ref|YP_004084636.1| bifunctional deaminase-reductase domain protein [Micromonospora sp.
           L5]
 gi|315412368|gb|ADU10485.1| bifunctional deaminase-reductase domain protein [Micromonospora sp.
           L5]
          Length = 213

 Score = 36.0 bits (82), Expect = 9.0,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
           GGA V    + + +VD + L  + +++G G
Sbjct: 145 GGADVIRQALAAGVVDELGLSTAPVILGRG 174


>gi|295688272|ref|YP_003591965.1| GntR family transcriptional regulator /aminotransferase
           domain-containing protein [Caulobacter segnis ATCC
           21756]
 gi|295430175|gb|ADG09347.1| transcriptional regulator, GntR family with aminotransferase domain
           [Caulobacter segnis ATCC 21756]
          Length = 448

 Score = 36.0 bits (82), Expect = 9.0,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 3/84 (3%)

Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD 271
            GL E  P RI++    + +L + +        VI+      P L     ++ + ++ C 
Sbjct: 157 PGLGEVDPARIVVASGAQTALSALLDHLTAPGDVILAEAFAYPGLLATAVRRGVTVVGCP 216

Query: 272 CRD---LKKLLTILVGRGVTSLLV 292
             D     + L  L+      LL 
Sbjct: 217 MDDQGLEPEALARLIAEHHPRLLC 240


>gi|115387411|ref|XP_001211211.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114195295|gb|EAU36995.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 786

 Score = 36.0 bits (82), Expect = 9.1,   Method: Composition-based stats.
 Identities = 16/134 (11%), Positives = 44/134 (32%), Gaps = 9/134 (6%)

Query: 108 DVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG-- 165
               +    ++L+ +GI  ++ +    K  +                ++    D+     
Sbjct: 364 FPNHAEVNHEYLAAEGIEAEQAILQHLKELVMGVRDHWPGGPDAEQYRVVAEDDDECKNH 423

Query: 166 ----MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL--ADDPELTCRLNGLQEHSP 219
                   G   +     +     LR   D + + + T++    DP +   +N   ++ P
Sbjct: 424 LDELTTDPGFRDLNYARVRATERYLRHHCDEVFI-VSTIIRCTTDPSIDDIINRCAQNQP 482

Query: 220 MRIILDPHFKLSLD 233
           +RI+     +++  
Sbjct: 483 IRIVCTRSEEVNPS 496


>gi|299756210|ref|XP_001829171.2| dCMP deaminase [Coprinopsis cinerea okayama7#130]
 gi|298411573|gb|EAU92806.2| dCMP deaminase [Coprinopsis cinerea okayama7#130]
          Length = 265

 Score = 36.0 bits (82), Expect = 9.2,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 3/41 (7%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG 45
           S+D  FM+ A   +            V  ++V++  VI  G
Sbjct: 228 SWDDYFMTLA-SLASRRSNCMKR--RVGAVLVRENRVIATG 265


>gi|85715601|ref|ZP_01046581.1| molybdopterin binding protein [Nitrobacter sp. Nb-311A]
 gi|85697540|gb|EAQ35417.1| molybdopterin binding protein [Nitrobacter sp. Nb-311A]
          Length = 534

 Score = 36.0 bits (82), Expect = 9.2,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 9/118 (7%)

Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
           +  A V +VT +    +  A R  N+  +Y    D    L   +  G+ ++  E G A+ 
Sbjct: 380 SKAASVTVVTGHQAAEVERALRGLNVTFVYNP--DFPTGLASSIKVGIGAIPKEAGGALI 437

Query: 300 H----SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
                  I++ LVD +I   +      G + +    G  + N +   R +FG  + LE
Sbjct: 438 CLGDMPLIDAHLVDRLIAAFAP---DRGMLIAVPVSGGRQGNPVLWSRRFFGELMALE 492


>gi|317154550|ref|YP_004122598.1| CMP/dCMP deaminase zinc-binding protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944801|gb|ADU63852.1| CMP/dCMP deaminase zinc-binding protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 176

 Score = 36.0 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 18/86 (20%)

Query: 30  SVACLIV-KDGIVI----GRGVTAYGGCPHAE-VQA---LEEAGEEAR---GATAYVTLE 77
               ++   DG+V+       +       HAE V A        ++     G+T Y ++E
Sbjct: 36  PFGAVVAGPDGMVVMTQQAETIATQDHTRHAEAVLASRFCRAHYDDPAFRAGSTLYSSME 95

Query: 78  PCSHYGRSPPCAQFIIECGIRRVVVC 103
           PC+       C   + + GI R+V  
Sbjct: 96  PCAM------CMFAMFKAGIGRLVYG 115


>gi|160895811|ref|YP_001561393.1| alcohol dehydrogenase [Delftia acidovorans SPH-1]
 gi|160361395|gb|ABX33008.1| Alcohol dehydrogenase zinc-binding domain protein [Delftia
           acidovorans SPH-1]
          Length = 333

 Score = 36.0 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 19/133 (14%)

Query: 211 LNGLQEHSPMR----IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
              L E +P R    +++     ++L +  I  A  A V++V+ +DD +   A    +  
Sbjct: 146 WFALAESAPTRPGDTVVIMGTGGVALFAMQIAHAQGARVVVVSGSDDKLARAAQLGADHG 205

Query: 267 IIYCDCRDLKKLLTIL-VGRGVTSLLVE--GG---AAVAHSFINSRLV--------DSII 312
           I      D    +  L  GRG   +L E  GG        +      V        D + 
Sbjct: 206 IHRHRTPDWAAEVRALTGGRGADHVL-ELAGGDNFGRSLSALAQGGRVSVIGNLQGDELR 264

Query: 313 LYRSQIVIGEGGI 325
                +++G   +
Sbjct: 265 GSVYPLLLGRATV 277


>gi|159491366|ref|XP_001703639.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158270606|gb|EDO96446.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 61

 Score = 36.0 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 4/39 (10%)

Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA 48
          M+ A   +         N  V  +IV  D +++G G   
Sbjct: 1  MALAFLSAERSK---DPNKQVGAVIVNADNVILGIGYNG 36


>gi|196230871|ref|ZP_03129732.1| bifunctional deaminase-reductase domain protein [Chthoniobacter
           flavus Ellin428]
 gi|196225212|gb|EDY19721.1| bifunctional deaminase-reductase domain protein [Chthoniobacter
           flavus Ellin428]
          Length = 195

 Score = 36.0 bits (82), Expect = 9.4,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 24/52 (46%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
             D+ + +  L  +    L+V G + +    +   LVD ++L    +++G G
Sbjct: 105 GADIMEGVRRLKSQDGPDLIVWGSSTLTPVLLEQGLVDEVVLIVYPVLLGRG 156


>gi|46205812|ref|ZP_00048057.2| COG0262: Dihydrofolate reductase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 88

 Score = 36.0 bits (82), Expect = 9.5,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
             D  + +  L       + + GG A+A   ++   +D + L  + +++G  G+P   E 
Sbjct: 5   GADPXETVRALKREDGRGIWLCGGGALAAVLVDE--IDRLALKVNPVMLGA-GVPLFGER 61

Query: 332 GYLEKNFMCVRRDYFGSDVCL-EY 354
            Y   ++       F S V L EY
Sbjct: 62  DYAPLSWRSTGTQTFRSGVTLAEY 85


>gi|84497139|ref|ZP_00995961.1| hypothetical protein JNB_13133 [Janibacter sp. HTCC2649]
 gi|84382027|gb|EAP97909.1| hypothetical protein JNB_13133 [Janibacter sp. HTCC2649]
          Length = 191

 Score = 36.0 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 53/199 (26%), Gaps = 38/199 (19%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPI---TGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
            T  +  S D   G A           G       + L A    ++ G  T  A    L 
Sbjct: 5   YTWDVFCSLDGF-GTATGDWTGYWGKQGPELLEHRNSLYAGEQRMVFGANTYRAFAGMLA 63

Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
                     P    +     L               ++ T      L       +  +I
Sbjct: 64  ASTEDSDVRDPW---VTRMVNLPA------------TVVSTT-----LREPLDWPDATVI 103

Query: 269 YCDCRDLKKLLTI-----LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
             D  D+   L       L   G  S        +  + + + LVD + +    ++ G+ 
Sbjct: 104 SGDAVDVVARLKAGSDVPLRSHGSLS--------MNRALLAAGLVDRVQVSVFPVITGQN 155

Query: 324 GIPSPLEEGYLEKNFMCVR 342
           G   P+  G  + +   + 
Sbjct: 156 GTE-PIFGGAADFDLELLE 173


>gi|157953436|ref|YP_001498327.1| hypothetical protein AR158_C246R [Paramecium bursaria Chlorella
           virus AR158]
 gi|156068084|gb|ABU43791.1| hypothetical protein AR158_C246R [Paramecium bursaria Chlorella
           virus AR158]
          Length = 119

 Score = 36.0 bits (82), Expect = 9.8,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 35/117 (29%), Gaps = 24/117 (20%)

Query: 3   VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGG----CPHAEV 57
           ++  D   +S A+  +    G    N    C+I+    +I  G             HAE+
Sbjct: 1   MTRLDEA-VSIAINQANRSTG----NFRHGCVILSGKKIIAEGHNHMRRDIGTFSVHAEM 55

Query: 58  QALEEAGEEARGATAYVTLEPC----------SHYGRSPPCAQFIIECGIRRVVVCV 104
             L     +   +  Y  L+            ++      C   + +  I  +V   
Sbjct: 56  DGL----WKIYDSDLYDNLKAVIIRVTTTGKLANSRPCEMCMAALRQHKIETIVYST 108


>gi|262200314|ref|YP_003271522.1| bifunctional deaminase-reductase domain-containing protein
           [Gordonia bronchialis DSM 43247]
 gi|262083661|gb|ACY19629.1| bifunctional deaminase-reductase domain protein [Gordonia
           bronchialis DSM 43247]
          Length = 188

 Score = 36.0 bits (82), Expect = 10.0,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 17/36 (47%)

Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
            +A   + +  VD + L    ++IG G   +P + G
Sbjct: 129 TLADGLLRAGAVDELRLRIVPVLIGAGRTFTPPDLG 164


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.314    0.151    0.455 

Lambda     K      H
   0.267   0.0460    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,622,163,411
Number of Sequences: 14124377
Number of extensions: 394317118
Number of successful extensions: 956847
Number of sequences better than 10.0: 8533
Number of HSP's better than 10.0 without gapping: 6888
Number of HSP's successfully gapped in prelim test: 5791
Number of HSP's that attempted gapping in prelim test: 925866
Number of HSP's gapped (non-prelim): 13585
length of query: 364
length of database: 4,842,793,630
effective HSP length: 140
effective length of query: 224
effective length of database: 2,865,380,850
effective search space: 641845310400
effective search space used: 641845310400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 82 (36.0 bits)